BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus
Liberibacter asiaticus str. psy62]
         (648 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040511|gb|ACT57307.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 648

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 648/648 (100%), Positives = 648/648 (100%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG
Sbjct: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL
Sbjct: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE
Sbjct: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI
Sbjct: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT
Sbjct: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD
Sbjct: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL
Sbjct: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP
Sbjct: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR
Sbjct: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK
Sbjct: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL
Sbjct: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648


>gi|227822812|ref|YP_002826784.1| DNA primase [Sinorhizobium fredii NGR234]
 gi|227341813|gb|ACP26031.1| DNA primase [Sinorhizobium fredii NGR234]
          Length = 663

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 294/665 (44%), Positives = 419/665 (63%), Gaps = 25/665 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ ++   +PIS++IG+ V WDRRKTN  +GDYWACCPFH EK+PSFHC D K 
Sbjct: 1   MRFSPSFLDEIRDRVPISDVIGKRVTWDRRKTNVSRGDYWACCPFHGEKSPSFHCEDRKS 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+VQ++A +AGVP+P  DP+ E++E+ +T L+ +
Sbjct: 61  RYHCFGCGVSGDHFRFLTDLEGLSFPEAVQQIADMAGVPMPQPDPQAERRERERTSLLDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L+ A   +   YL ERG+    IE F+LG+APDSR +L+E L  K   +
Sbjct: 121 MELATQFFQDQLQAATGAKARAYLRERGLTGRTIETFRLGFAPDSRNALKEFLAGKSVGK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G +   SYDRFR+R++FPI S+R +VIAFGGR +S     KYLNS ET 
Sbjct: 181 EQIEACGLVVHGPDVPVSYDRFRDRIMFPILSAREKVIAFGGRAMSADAPAKYLNSNETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  L+NF  A        R     + +  II VEGYMDV++L QAG++N V+ LGT
Sbjct: 241 LFHKGNVLFNFARAR-------RASQGADGTGTIIAVEGYMDVIALHQAGLENAVAPLGT 293

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLWK++ + VLCFDGD  G+RAA +A+DL L HL PG  V F +L  G+DPD
Sbjct: 294 ALTENQLDLLWKMTAQPVLCFDGDGAGIRAANRAVDLALPHLKPGRSVRFAMLPDGKDPD 353

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G+  F+K++  +  L DM+W RE +   F+TP++RAELE  L+   + + D+ +
Sbjct: 354 DLVRHEGREPFDKVLANARSLADMVWMREVQGGGFDTPEKRAELEARLRQVTSVVGDESV 413

Query: 421 RYYYSQAIRDRLQQLFQ----------------KYITEHSGYGRYWKKNARHRDQKGPSQ 464
           R +Y Q +RDRL    Q                +      G G       R+      S 
Sbjct: 414 RRHYGQDMRDRLNAFLQGSAPFRSERRPFERGGRDRGGRQGGGFRQAGADRNAGPTTISD 473

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
           RL +SSLV G+    P LRE+ L LT++NHP +L ++Y E++ I +D+ +LQ+ W+ + +
Sbjct: 474 RLARSSLVSGQQ-AVPLLRESVLALTIVNHPQLLFDEYDEISTIEFDHRDLQRCWAAVLN 532

Query: 525 DFV-EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                      E + ++L   GFG L+  LD+Q+R A LW+ATT A   D R+GY QALA
Sbjct: 533 AAATNGPRLTREGLVEQLETEGFGVLIGALDQQIRYARLWTATTAAAPEDAREGYLQALA 592

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
           L+KR + L+ Q+ E+E+++A  T +G+ E    L+  L EV +++ ++E+QEA+IEGFG 
Sbjct: 593 LHKRTKALNWQRRELERELAYATEEGDIEAVPQLLRTLQEVQLEVTRLENQEAIIEGFGV 652

Query: 644 MSGRL 648
           +SGR+
Sbjct: 653 LSGRV 657


>gi|110633817|ref|YP_674025.1| DNA primase [Mesorhizobium sp. BNC1]
 gi|110284801|gb|ABG62860.1| DNA primase [Chelativorans sp. BNC1]
          Length = 639

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 278/655 (42%), Positives = 392/655 (59%), Gaps = 26/655 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS ++G  V +D+RK+N  +GD+WACCPFH EK+PSFHC D KG
Sbjct: 1   MRFPNSFLDEIRDRVPISQVVGSRVTFDKRKSNPGRGDFWACCPFHGEKSPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P  DP+ EK+EK +  L  +
Sbjct: 61  RYHCFGCGVSGDHFRFLTELDGMSFPEAVERVAEMAGVPMPARDPEAEKREKERASLTDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L+ AR      YL  RGI S   + F+LG+APDSR +L+E L  +G  +
Sbjct: 121 MEMAAQFFQDCLQGARGAEARAYLRGRGIASLTQQTFRLGFAPDSRNALKEFLAGRGVGK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E++   GL++ G +   SYDRFR R++FPI  +RG+VIAFGGR LS     KYLNSP+T 
Sbjct: 181 EQMEACGLVVSGPDVPVSYDRFRGRVMFPIEDARGRVIAFGGRALSSDVPAKYLNSPDTE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN   A   ++              +I VEGYMDV++L QA V+NVV+ LGT
Sbjct: 241 LFHKGNVLYNHARARKAVKD-----------GPVIAVEGYMDVIALAQASVENVVAPLGT 289

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++S   VLCFDGD  GLRAA++A DL L  + PG  + F LL  G+DPD
Sbjct: 290 ALTENQLELLWRISGEPVLCFDGDGAGLRAAWRAADLALPLVQPGRSLRFALLPEGKDPD 349

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G+ AF+ LI E+ PL D+LW RET  R F+TP+ RAELE   +   N I+D+ +
Sbjct: 350 DLVREEGRQAFDALIGETRPLADLLWMRETSGRVFDTPERRAELEQTFRELANRIRDENV 409

Query: 421 RYYYSQAIRDRLQQLF-------QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           R +Y+Q +R+R+Q  F       ++     S  G    K      +   S+ L +S++VK
Sbjct: 410 RRHYAQELRERVQSFFGSGPQPGRQQRGGFSPRGGGPGKPGAAAGRFAVSESLARSAMVK 469

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                 P LREA L++ L+NHPA++ EQ+  +  +   N +L+KL+S L           
Sbjct: 470 RTAGMMP-LREATLIVALVNHPALIDEQFDAVEKLSLANADLKKLYSALLDAVAHDVARD 528

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            E +   +   G GE+L++    VR A  W A  EA + D R+ + QAL L++    L R
Sbjct: 529 HEALTAAIGAAGLGEILERAQTLVRRANQWPALPEAALEDAREAFLQALHLHRSAGALHR 588

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           + +  E+ +A        E T      L E+  ++  ++S EA+IEGFG +SGR+
Sbjct: 589 ELKAAEQALA-------NEPTEENYRHLVEIQAELRNLQSAEALIEGFGILSGRV 636


>gi|222086545|ref|YP_002545079.1| DNA primase protein [Agrobacterium radiobacter K84]
 gi|221723993|gb|ACM27149.1| DNA primase protein [Agrobacterium radiobacter K84]
          Length = 664

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 305/665 (45%), Positives = 422/665 (63%), Gaps = 24/665 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ ++   +PIS++IG+ V WDRRKTN  +GDYWACCPFH EK+PSFHC D KG
Sbjct: 1   MRFSNTFLDEIRDRVPISDVIGRRVTWDRRKTNVPRGDYWACCPFHGEKSPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+VQ++A +AGVP+P+ DP   K+EK +T L+ +
Sbjct: 61  RYHCFGCGVTGDHFRFLTDLEGLSFPEAVQQIADMAGVPMPIADPMEAKREKERTSLLDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L+ A   R   YL +RG+    I+ F+LGY+PDSR +L+E L  K   +
Sbjct: 121 MEMATQFFQDQLQTANGARARAYLRDRGLTGRTIDTFRLGYSPDSRNALKEFLSSKDVVK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G +   SYDRFR+R++FPI SSR +VIAFGGR +S     KYLNS ET 
Sbjct: 181 EQIEACGLVVHGPDIPVSYDRFRDRIMFPILSSREKVIAFGGRAMSPDAPAKYLNSNETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYNF  A              + S  II VEGYMDV++L QAGV+N V+ LGT
Sbjct: 241 LFHKGNVLYNFTRARRAA-------QGNDGSGTIIAVEGYMDVIALHQAGVENAVAPLGT 293

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLWK++P+ +LCFDGD  G+RAA +A DL L H+ PG  V F LL  G+DPD
Sbjct: 294 ALTESQLELLWKMTPQPMLCFDGDGAGIRAANRAADLALPHIKPGRTVRFALLPDGKDPD 353

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G+  F+K++ ++ PL +M+W RET N +F+TP+ RAELE  LK  ++ I D+ +
Sbjct: 354 DLVRHDGRAPFDKVLAQAKPLAEMIWGRETSNGTFDTPEARAELEARLKQMVSVIADENV 413

Query: 421 RYYYSQAIRDRLQQLFQKYITE---------------HSGYGRYWKKNARHRDQKGPSQR 465
           R +Y Q IRDRL  LFQ                     S  GR  +   R       +  
Sbjct: 414 RRHYQQDIRDRLNGLFQPQFRRNDNQQGRGFSRENNGRSFGGRGGQSRDRPAAVSTKATD 473

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
            +  S +       P LRE+ L +T++NHP +LQ++Y E+A I Y++ ELQ+LWS +   
Sbjct: 474 RLMRSGMIKGHQDVPGLRESVLAVTIVNHPLLLQDEYDEIAAIDYESRELQRLWSAMLGA 533

Query: 526 FVE--QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                 +    E + ++L E+GF  LLK LD+QVR+A LW+AT EA + D R+GY+QALA
Sbjct: 534 AATIPAQQLSRERLLEQLEEQGFAALLKALDQQVRNARLWTATEEAAMEDAREGYRQALA 593

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
           L+KR + L   K E+E+ +A+ T +G+ E    L+  L EV ++  ++E+QEA+I+GFG 
Sbjct: 594 LHKRSKALRWHKIELERAVAEATEEGDGELIEQLMRALQEVQLEALRLENQEAIIDGFGV 653

Query: 644 MSGRL 648
           +SGR+
Sbjct: 654 LSGRI 658


>gi|17986813|ref|NP_539447.1| DNA primase [Brucella melitensis bv. 1 str. 16M]
 gi|17982446|gb|AAL51711.1| DNA primase [Brucella melitensis bv. 1 str. 16M]
          Length = 681

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 278/662 (41%), Positives = 401/662 (60%), Gaps = 27/662 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG  V +DR+K+N  KGD+WACCPFH EKTPSFHC D KG
Sbjct: 27  MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 86

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P  DP++EK+E  +  L  +
Sbjct: 87  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 146

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L++A   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 147 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 206

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 207 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 266

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A    Q           +  II VEGYMDV++L QAG+ +VV+ LGT
Sbjct: 267 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 321

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  +LCFDGD  GLRAAY+A DL L  L PG  + F LL  G+DPD
Sbjct: 322 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 381

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G +AF  ++ ++ PLV+M+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 382 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 441

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468
           R +YSQ +R+R Q  F +        G+  +   R  +                S  L +
Sbjct: 442 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 501

Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           S+LVKG          LRE A++LTL+NHP +++E ++ LA +   ++ L+ L   +   
Sbjct: 502 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 561

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
               +      + + L + G G+L+K L++ V+ A LW+ATT A   D R+  +QAL L+
Sbjct: 562 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 621

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +R R L ++   +E  +       E ++T  L + L ++  QI + ++ EA+I+GFG  S
Sbjct: 622 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 674

Query: 646 GR 647
           GR
Sbjct: 675 GR 676


>gi|27382461|ref|NP_773990.1| DNA primase [Bradyrhizobium japonicum USDA 110]
 gi|27355632|dbj|BAC52615.1| DNA primase [Bradyrhizobium japonicum USDA 110]
          Length = 666

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 238/683 (34%), Positives = 365/683 (53%), Gaps = 58/683 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ +L   + +S ++G+ V   +        ++    PF  EKTPSF+ ND KG
Sbjct: 1   MRFTPQFLDELRARLSVSEVVGKRVKLKKAGR-----EWKGLSPFQQEKTPSFYVNDQKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+ FS    GD ++F+    G  F E+V+RLA++AG+PLP V P   ++E+ +  L  +
Sbjct: 56  FYHDFSSGKHGDIITFVMETDGLPFAEAVERLASMAGLPLPAVTPDAARQEQRRRSLHDV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +++A  +F  +L +    +   YL +R I       F+LGYA   R++L+EHL + G S 
Sbjct: 116 MDLAAKYFAETLASRVGAKARGYLADRAISPATQLQFRLGYASPDRFALKEHLGKLGVSV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++E GLLI GD+    YDRFR+R++FPI   RG+VIAFGGR L K    KYLNSPET 
Sbjct: 176 DDMVETGLLIGGDDIPVPYDRFRDRVMFPITDLRGRVIAFGGRALEKDVPAKYLNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG NLYN   A              +  S +I+VEGY+DV+++  AG    V+ LGT
Sbjct: 236 LFHKGDNLYNHQTARKA----------THDGSTLIVVEGYVDVIAMVTAGFAGSVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLWK++   +LCFDGD  G +AAY+A DL L  L PG  + F LL  G+DPD
Sbjct: 286 ALTENQLALLWKMADEPILCFDGDRAGQKAAYRAADLALPFLSPGKSLRFALLPEGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G+ A E++I  + PL DMLW RE E  +F TP+ RA LE  +K     I+D+ +
Sbjct: 346 DLVRSGGRGAMEEVIAAARPLADMLWSRELEGGNFATPERRAALEARIKELAGGIRDEVV 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP------------------ 462
           R YY Q + +RLQ+ F          GR   +  +      P                  
Sbjct: 406 RRYYRQDLAERLQRTFAPESGRGGFAGRGNFRPGQGGRPFQPRSGGQANRFGGQGFRGAP 465

Query: 463 ------------SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
                       +   + +S +        S REA +L  LINHP +L E  +E+A + +
Sbjct: 466 GPTPLPSGPYQAASPQLATSPIMKGQRSVISRREALILQCLINHPWLLHEHLEEVAALEF 525

Query: 511 DNNELQKLWSFLFSDFVEQKYFLP------EEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
            + E  KL + + + F    +  P      E++   + + GF +LL++++  +  A +W 
Sbjct: 526 AHPEAHKLRAGIIAAFANDHHHSPDPGELAEKMRADIEKGGFSQLLQRVENGITTAAVWG 585

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           A   A   DV   + Q +AL++++  L R+ ++ E  + +       + +   ++ L +V
Sbjct: 586 AREGAARDDVLSTWHQLVALHRQWHSLLRELKDAELALGE-------DPSEANLAWLRDV 638

Query: 625 HIQIHQIESQEAMIEGFGKMSGR 647
             +I +++  EA+IEGFG++SGR
Sbjct: 639 KARIGEVDGTEALIEGFGELSGR 661


>gi|23502349|ref|NP_698476.1| DNA primase [Brucella suis 1330]
 gi|254704734|ref|ZP_05166562.1| DNA primase [Brucella suis bv. 3 str. 686]
 gi|261755431|ref|ZP_05999140.1| DNA primase [Brucella suis bv. 3 str. 686]
 gi|23348330|gb|AAN30391.1| DNA primase [Brucella suis 1330]
 gi|261745184|gb|EEY33110.1| DNA primase [Brucella suis bv. 3 str. 686]
          Length = 655

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 278/662 (41%), Positives = 401/662 (60%), Gaps = 27/662 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG  V +DR+K+N  KGD+WACCPFH EKTPSFHC D KG
Sbjct: 1   MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P  DP++EK+E  +  L  +
Sbjct: 61  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L++A   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 121 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A    Q           +  II VEGYMDV++L QAG+ +VV+ LGT
Sbjct: 241 LFHKGRVLYNGSRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  +LCFDGD  GLRAAY+A DL L  L PG  + F LL  G+DPD
Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G +AF  ++ ++ PLV+M+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468
           R +YSQ +R+R Q  F +        G+  +   R  +                S  L +
Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 475

Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           S+LVKG          LRE A++LTL+NHP +++E ++ LA +   ++ L+ L   +   
Sbjct: 476 STLVKGGRQGGATHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 535

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
               +      + + L + G G+L+K L++ V+ A LW+ATT A   D R+  +QAL L+
Sbjct: 536 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 595

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +R R L ++   +E  +       E ++T  L + L ++  QI + ++ EA+I+GFG  S
Sbjct: 596 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 648

Query: 646 GR 647
           GR
Sbjct: 649 GR 650


>gi|86358556|ref|YP_470448.1| DNA primase [Rhizobium etli CFN 42]
 gi|86282658|gb|ABC91721.1| DNA primase protein [Rhizobium etli CFN 42]
          Length = 665

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 311/660 (47%), Positives = 422/660 (63%), Gaps = 13/660 (1%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ ++   +PISN+I + V WD+RKTN  +GDYWACCPFH EK+PSFHC D KG
Sbjct: 1   MRFSNTFLDEIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+VQ++A +AGVP+P+ DP +EK+EK +  LI +
Sbjct: 61  RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L+ A   +   YL +RG+    IE F+LGYAPDSR +L+E L  KG S+
Sbjct: 121 MEMATSFFQDQLQTANGAKARAYLRDRGLTGRTIETFRLGYAPDSRNALKEFLAGKGVSK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++  +N   SYDRFR+R++FPI SSR +VIAFGGR +S     KYLNS ET 
Sbjct: 181 EQIEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSSDAPAKYLNSNETE 239

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYNF  A   +Q   R D   N+S  II VEGYMDV++L QAG++N V+ LGT
Sbjct: 240 LFHKGNVLYNFARARRAIQGPGRGDQDDNASGTIIAVEGYMDVIALYQAGIENAVAPLGT 299

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLWK+ P+ VLCFDGD  G+RAA +A +L L HL PG  V F LL  G+DPD
Sbjct: 300 ALTENQLELLWKMVPQPVLCFDGDGAGIRAANRAAELALPHLKPGRSVRFALLPDGKDPD 359

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G+  F+K++ ++ PL +MLW RE     F+TP+ RAELE  LK  +  I D+ +
Sbjct: 360 DLVRDEGRAPFDKVMSQAKPLSEMLWSREINTGKFDTPEARAELEARLKQLVAVIGDENV 419

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL--------- 471
           R +Y Q IRDRL   FQ      +   R     +    +   ++   +S           
Sbjct: 420 RRHYQQDIRDRLNAFFQPQFQNRNSGERRGFSGSPRNGRDNAAKAGPKSPSLISDRLARS 479

Query: 472 -VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVE 528
                     +LRE+ L LT++NHPA++ + Y E+A I YD+ ELQ+LWS +   +  V 
Sbjct: 480 GPVRGHRDNTALRESVLALTIVNHPALMIDDYDEIAAIEYDSRELQRLWSAMLGAAAAVA 539

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             +   E + +RL   GFG L+K LD+QVR+A LW+AT EA + D R+GY+QALA +KR 
Sbjct: 540 GPHLTREYLTERLEFEGFGPLIKSLDQQVRNARLWTATEEAAMEDAREGYRQALAFHKRA 599

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           + L RQK E+E++IA  T  G+ E    LI    EVH++  ++E+QEA+I+GFG +SGR+
Sbjct: 600 KALRRQKMELEREIALATEAGDGEAIVQLIRAQQEVHLEGVRLENQEAIIDGFGVLSGRV 659


>gi|148559018|ref|YP_001259365.1| DNA primase [Brucella ovis ATCC 25840]
 gi|148370275|gb|ABQ60254.1| DNA primase [Brucella ovis ATCC 25840]
          Length = 681

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 278/662 (41%), Positives = 401/662 (60%), Gaps = 27/662 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG  V +DR+K+N  KGD+WACCPFH EKTPSFHC D KG
Sbjct: 27  MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 86

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P  DP++EK+E  +  L  +
Sbjct: 87  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 146

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L++A   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 147 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 206

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 207 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 266

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A    Q           +  II VEGYMDV++L QAG+ +VV+ LGT
Sbjct: 267 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 321

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  +LCFDGD  GLRAAY+A DL L  L PG  + F LL  G+DPD
Sbjct: 322 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 381

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G +AF  ++ ++ PLV+M+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 382 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 441

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468
           R +YSQ +R+R Q  F +        G+  +   R  +                S  L +
Sbjct: 442 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 501

Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           S+LVKG          LRE A++LTL+NHP +++E ++ LA +   ++ L+ L   +   
Sbjct: 502 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 561

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
               +      + + L + G G+L+K L++ V+ A LW+ATT A   D R+  +QAL L+
Sbjct: 562 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 621

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +R R L ++   +E  +       E ++T  L + L ++  QI + ++ EA+I+GFG  S
Sbjct: 622 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 674

Query: 646 GR 647
           GR
Sbjct: 675 GR 676


>gi|306844487|ref|ZP_07477076.1| DNA primase [Brucella sp. BO1]
 gi|306275098|gb|EFM56854.1| DNA primase [Brucella sp. BO1]
          Length = 655

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 279/662 (42%), Positives = 403/662 (60%), Gaps = 27/662 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG  V +DR+K+N  KGD+WACCPFH EKTPSFHC D KG
Sbjct: 1   MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P  DP++EK+E  +  L  +
Sbjct: 61  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF H L++A   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 121 MELAAQFFEHQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A    Q           +  II VEGYMDV++L QAG+ +VV+ LGT
Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  +LCFDGD  GLRAAY+A DL L  L PG  + F LL  G+DPD
Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G +AF  ++ ++ PLV+M+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD------------QKGPSQRLMQ 468
           R +YSQ +R+R Q  F +    +   G+  +   R  +            +   S  L +
Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGYQNGGQRSQPFTRRNEGARGRGGPAGGGRLAISDSLAR 475

Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           S+LVKG          LRE A++LTL+NHP +++E ++ LA +   ++ L+ L   +   
Sbjct: 476 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 535

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
                      + + L + G G+L+K L++ V+ A LW+ATT A   D R+  +QAL L+
Sbjct: 536 LAAGHVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 595

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +R R L ++   +E  +       E ++T  L + L ++  QI + ++ EA+I+GFG  S
Sbjct: 596 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 648

Query: 646 GR 647
           GR
Sbjct: 649 GR 650


>gi|254719521|ref|ZP_05181332.1| DNA primase [Brucella sp. 83/13]
 gi|265984527|ref|ZP_06097262.1| DNA primase [Brucella sp. 83/13]
 gi|264663119|gb|EEZ33380.1| DNA primase [Brucella sp. 83/13]
          Length = 656

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 278/663 (41%), Positives = 402/663 (60%), Gaps = 28/663 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG  V +DR+K+N  KGD+WACCPFH EKTPSFHC D KG
Sbjct: 1   MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P  DP++EK+E  +  L  +
Sbjct: 61  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF + L++A   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 121 MELAAQFFENQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A    Q           +  II VEGYMDV++L QAG+ +VV+ LGT
Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  +LCFDGD  GLRAAY+A DL L  L PG  + F LL  G+DPD
Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G +AF  ++ ++ PLV+M+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-------------GPSQRLM 467
           R +YSQ +R+R Q  F +    +   G+  +   R  +                 S  L 
Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGYQNGGQRSQPFTRRNEGARGRGGPAGGSGRLAISDSLA 475

Query: 468 QSSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
           +S+LVKG          LRE A++LTL+NHP +++E ++ LA +   ++ L+ L   +  
Sbjct: 476 RSTLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLD 535

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                       + + L + G G+L+K L++ V+ A LW+ATT A   D R+  +QAL L
Sbjct: 536 VLAAGHVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHL 595

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
           ++R R L ++   +E  +       E ++T  L + L ++  QI + ++ EA+I+GFG  
Sbjct: 596 HQRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLS 648

Query: 645 SGR 647
           SGR
Sbjct: 649 SGR 651


>gi|161619428|ref|YP_001593315.1| DNA primase [Brucella canis ATCC 23365]
 gi|260566018|ref|ZP_05836488.1| DNA primase [Brucella suis bv. 4 str. 40]
 gi|161336239|gb|ABX62544.1| DNA primase [Brucella canis ATCC 23365]
 gi|260155536|gb|EEW90616.1| DNA primase [Brucella suis bv. 4 str. 40]
          Length = 655

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 278/662 (41%), Positives = 401/662 (60%), Gaps = 27/662 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG  V +DR+K+N  KGD+WACCPFH EKTPSFHC D KG
Sbjct: 1   MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P  DP++EK+E  +  L  +
Sbjct: 61  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L++A   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 121 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A    Q           +  II VEGYMDV++L QAG+ +VV+ LGT
Sbjct: 241 LFHKGRVLYNGSRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  +LCFDGD  GLRAAY+A DL L  L PG  + F LL  G+DPD
Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G +AF  ++ ++ PLV+M+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468
           R +YSQ +R+R Q  F +        G+  +   R  +                S  L +
Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 475

Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           S+LVKG          LRE A++LTL+NHP +++E ++ LA +   ++ L+ L   +   
Sbjct: 476 STLVKGGRQGGATHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 535

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
               +      + + L + G G+L+K L++ V+ A LW+ATT A   D R+  +QAL L+
Sbjct: 536 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 595

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +R R L ++   +E  +       E ++T  L + L ++  QI + ++ EA+I+GFG  S
Sbjct: 596 QRARTLYKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 648

Query: 646 GR 647
           GR
Sbjct: 649 GR 650


>gi|254714702|ref|ZP_05176513.1| DNA primase [Brucella ceti M644/93/1]
 gi|254717763|ref|ZP_05179574.1| DNA primase [Brucella ceti M13/05/1]
 gi|261219610|ref|ZP_05933891.1| DNA primase [Brucella ceti M13/05/1]
 gi|261322498|ref|ZP_05961695.1| DNA primase [Brucella ceti M644/93/1]
 gi|260924699|gb|EEX91267.1| DNA primase [Brucella ceti M13/05/1]
 gi|261295188|gb|EEX98684.1| DNA primase [Brucella ceti M644/93/1]
          Length = 655

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 278/662 (41%), Positives = 401/662 (60%), Gaps = 27/662 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG  V +DR+K+N  KGD+WACCPFH EKTPSFHC D KG
Sbjct: 1   MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P  DP++EK+E  +  L  +
Sbjct: 61  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L++A   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 121 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A    Q           +  II VEGYMDV++L QAG+ +VV+ LGT
Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  +LCFDGD  GLRAAY+A DL L  L PG  + F LL  G+DPD
Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G +AF  ++ ++ PLV+M+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468
           R +YSQ +R+R Q  F +        G+  +   R  +                S  L +
Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISNSLAR 475

Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           S+LVKG          LRE A++LTL+NHP +++E ++ LA +   ++ L+ L   +   
Sbjct: 476 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 535

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
               +      + + L + G G+L+K L++ V+ A LW+ATT A   D R+  +QAL L+
Sbjct: 536 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 595

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +R R L ++   +E  +       E ++T  L + L ++  QI + ++ EA+I+GFG  S
Sbjct: 596 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 648

Query: 646 GR 647
           GR
Sbjct: 649 GR 650


>gi|163843734|ref|YP_001628138.1| DNA primase [Brucella suis ATCC 23445]
 gi|163674457|gb|ABY38568.1| DNA primase [Brucella suis ATCC 23445]
          Length = 655

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 278/662 (41%), Positives = 401/662 (60%), Gaps = 27/662 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG  V +DR+K+N  KGD+WACCPFH EKTPSFHC D KG
Sbjct: 1   MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P  DP++EK+E  +  L  +
Sbjct: 61  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L++A   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 121 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A    Q           +  II VEGYMDV++L QAG+ +VV+ LGT
Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  +LCFDGD  GLRAAY+A DL L  L PG  + F LL  G+DPD
Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G +AF  ++ ++ PLV+M+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468
           R +YSQ +R+R Q  F +        G+  +   R  +                S  L +
Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 475

Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           S+LVKG          LRE A++LTL+NHP +++E ++ LA +   ++ L+ L   +   
Sbjct: 476 STLVKGGRQGGATHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 535

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
               +      + + L + G G+L+K L++ V+ A LW+ATT A   D R+  +QAL L+
Sbjct: 536 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 595

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +R R L ++   +E  +       E ++T  L + L ++  QI + ++ EA+I+GFG  S
Sbjct: 596 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 648

Query: 646 GR 647
           GR
Sbjct: 649 GR 650


>gi|225852962|ref|YP_002733195.1| DNA primase [Brucella melitensis ATCC 23457]
 gi|254689669|ref|ZP_05152923.1| DNA primase [Brucella abortus bv. 6 str. 870]
 gi|254694159|ref|ZP_05155987.1| DNA primase [Brucella abortus bv. 3 str. Tulya]
 gi|254702197|ref|ZP_05164025.1| DNA primase [Brucella suis bv. 5 str. 513]
 gi|254708149|ref|ZP_05169977.1| DNA primase [Brucella pinnipedialis M163/99/10]
 gi|254710519|ref|ZP_05172330.1| DNA primase [Brucella pinnipedialis B2/94]
 gi|256032012|ref|ZP_05445626.1| DNA primase [Brucella pinnipedialis M292/94/1]
 gi|256045104|ref|ZP_05448005.1| DNA primase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256114034|ref|ZP_05454811.1| DNA primase [Brucella melitensis bv. 3 str. Ether]
 gi|256160210|ref|ZP_05457904.1| DNA primase [Brucella ceti M490/95/1]
 gi|256255416|ref|ZP_05460952.1| DNA primase [Brucella ceti B1/94]
 gi|256257920|ref|ZP_05463456.1| DNA primase [Brucella abortus bv. 9 str. C68]
 gi|256263560|ref|ZP_05466092.1| DNA primase [Brucella melitensis bv. 2 str. 63/9]
 gi|260169149|ref|ZP_05755960.1| DNA primase [Brucella sp. F5/99]
 gi|260565294|ref|ZP_05835778.1| DNA primase [Brucella melitensis bv. 1 str. 16M]
 gi|260755201|ref|ZP_05867549.1| DNA primase [Brucella abortus bv. 6 str. 870]
 gi|260884216|ref|ZP_05895830.1| DNA primase [Brucella abortus bv. 9 str. C68]
 gi|261214464|ref|ZP_05928745.1| DNA primase [Brucella abortus bv. 3 str. Tulya]
 gi|261222620|ref|ZP_05936901.1| DNA primase [Brucella ceti B1/94]
 gi|261315655|ref|ZP_05954852.1| DNA primase [Brucella pinnipedialis M163/99/10]
 gi|261318092|ref|ZP_05957289.1| DNA primase [Brucella pinnipedialis B2/94]
 gi|261752771|ref|ZP_05996480.1| DNA primase [Brucella suis bv. 5 str. 513]
 gi|261758661|ref|ZP_06002370.1| DNA primase [Brucella sp. F5/99]
 gi|265989124|ref|ZP_06101681.1| DNA primase [Brucella pinnipedialis M292/94/1]
 gi|265991537|ref|ZP_06104094.1| DNA primase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995375|ref|ZP_06107932.1| DNA primase [Brucella melitensis bv. 3 str. Ether]
 gi|265998585|ref|ZP_06111142.1| DNA primase [Brucella ceti M490/95/1]
 gi|225641327|gb|ACO01241.1| DNA primase [Brucella melitensis ATCC 23457]
 gi|260151362|gb|EEW86456.1| DNA primase [Brucella melitensis bv. 1 str. 16M]
 gi|260675309|gb|EEX62130.1| DNA primase [Brucella abortus bv. 6 str. 870]
 gi|260873744|gb|EEX80813.1| DNA primase [Brucella abortus bv. 9 str. C68]
 gi|260916071|gb|EEX82932.1| DNA primase [Brucella abortus bv. 3 str. Tulya]
 gi|260921204|gb|EEX87857.1| DNA primase [Brucella ceti B1/94]
 gi|261297315|gb|EEY00812.1| DNA primase [Brucella pinnipedialis B2/94]
 gi|261304681|gb|EEY08178.1| DNA primase [Brucella pinnipedialis M163/99/10]
 gi|261738645|gb|EEY26641.1| DNA primase [Brucella sp. F5/99]
 gi|261742524|gb|EEY30450.1| DNA primase [Brucella suis bv. 5 str. 513]
 gi|262553209|gb|EEZ09043.1| DNA primase [Brucella ceti M490/95/1]
 gi|262766488|gb|EEZ12277.1| DNA primase [Brucella melitensis bv. 3 str. Ether]
 gi|263002321|gb|EEZ14896.1| DNA primase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093588|gb|EEZ17613.1| DNA primase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661321|gb|EEZ31582.1| DNA primase [Brucella pinnipedialis M292/94/1]
 gi|326409501|gb|ADZ66566.1| DNA primase [Brucella melitensis M28]
 gi|326539208|gb|ADZ87423.1| DNA primase [Brucella melitensis M5-90]
          Length = 655

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 278/662 (41%), Positives = 401/662 (60%), Gaps = 27/662 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG  V +DR+K+N  KGD+WACCPFH EKTPSFHC D KG
Sbjct: 1   MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P  DP++EK+E  +  L  +
Sbjct: 61  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L++A   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 121 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A    Q           +  II VEGYMDV++L QAG+ +VV+ LGT
Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  +LCFDGD  GLRAAY+A DL L  L PG  + F LL  G+DPD
Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G +AF  ++ ++ PLV+M+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468
           R +YSQ +R+R Q  F +        G+  +   R  +                S  L +
Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 475

Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           S+LVKG          LRE A++LTL+NHP +++E ++ LA +   ++ L+ L   +   
Sbjct: 476 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 535

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
               +      + + L + G G+L+K L++ V+ A LW+ATT A   D R+  +QAL L+
Sbjct: 536 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 595

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +R R L ++   +E  +       E ++T  L + L ++  QI + ++ EA+I+GFG  S
Sbjct: 596 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 648

Query: 646 GR 647
           GR
Sbjct: 649 GR 650


>gi|294852800|ref|ZP_06793473.1| DNA primase [Brucella sp. NVSL 07-0026]
 gi|294821389|gb|EFG38388.1| DNA primase [Brucella sp. NVSL 07-0026]
          Length = 691

 Score =  518 bits (1334), Expect = e-145,   Method: Composition-based stats.
 Identities = 277/662 (41%), Positives = 400/662 (60%), Gaps = 27/662 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG  V +DR+K+N  KGD+WACCPFH EKTPSFHC D KG
Sbjct: 37  MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 96

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P  DP++EK+E  +  L  +
Sbjct: 97  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 156

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L++A   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 157 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 216

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 217 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 276

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A    Q           +  II VEGYMDV++L QAG+ +VV+ LGT
Sbjct: 277 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 331

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  +LCFDGD  GLRAAY+A DL L  L PG  + F LL  G+DPD
Sbjct: 332 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 391

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G +AF  ++ ++ PLV+M+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 392 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 451

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468
           R +YSQ +R+R Q  F +        G+  +      +                S  L +
Sbjct: 452 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTHRNEGARGRGGPAGSGRLAISDSLAR 511

Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           S+LVKG          LRE A++LTL+NHP +++E ++ LA +   ++ L+ L   +   
Sbjct: 512 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 571

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
               +      + + L + G G+L+K L++ V+ A LW+ATT A   D R+  +QAL L+
Sbjct: 572 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 631

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +R R L ++   +E  +       E ++T  L + L ++  QI + ++ EA+I+GFG  S
Sbjct: 632 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 684

Query: 646 GR 647
           GR
Sbjct: 685 GR 686


>gi|237815875|ref|ZP_04594872.1| DNA primase [Brucella abortus str. 2308 A]
 gi|237789173|gb|EEP63384.1| DNA primase [Brucella abortus str. 2308 A]
          Length = 691

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 277/662 (41%), Positives = 400/662 (60%), Gaps = 27/662 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG  V +DR+K+N  KGD+WACCPFH EKTPSFHC D KG
Sbjct: 37  MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 96

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P   P++EK+E  +  L  +
Sbjct: 97  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARAPEMEKREAQRATLYDV 156

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L++A   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 157 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 216

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 217 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 276

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A    Q           +  II VEGYMDV++L QAG+ +VV+ LGT
Sbjct: 277 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 331

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  +LCFDGD  GLRAAY+A DL L  L PG  + F LL  G+DPD
Sbjct: 332 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 391

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G +AF  ++ ++ PLV+M+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 392 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 451

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468
           R +YSQ +R+R Q  F +        G+  +   R  +                S  L +
Sbjct: 452 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 511

Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           S+LVKG          LRE A++LTL+NHP +++E ++ LA +   ++ L+ L   +   
Sbjct: 512 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 571

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
               +      + + L + G G+L+K L++ V+ A LW+ATT A   D R+  +QAL L+
Sbjct: 572 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 631

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +R R L ++   +E  +       E ++T  L + L ++  QI + ++ EA+I+GFG  S
Sbjct: 632 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 684

Query: 646 GR 647
           GR
Sbjct: 685 GR 686


>gi|256369897|ref|YP_003107408.1| DNA primase [Brucella microti CCM 4915]
 gi|256000060|gb|ACU48459.1| DNA primase [Brucella microti CCM 4915]
          Length = 655

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 277/662 (41%), Positives = 400/662 (60%), Gaps = 27/662 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG  V +DR+K+N  KGD+WACCPFH EKTPSFHC D KG
Sbjct: 1   MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P  DP++EK+E  +  L  +
Sbjct: 61  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L++A   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 121 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A    Q           +  II VEGYMDV++L QAG+ +VV+ LGT
Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  +LCFDGD  GLRAAY+A DL L  L PG  + F LL  G+DPD
Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G +AF  ++ ++ PLV+M+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468
           R +YSQ +R+R Q  F +        G+  +   R  +                S  L +
Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 475

Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           S+LVKG          LRE A++LTL+NHP +++E ++ LA +   ++ L+ L   +   
Sbjct: 476 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 535

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
               +      + + L + G G+L+K L++ V+ A LW+AT  A   D R+  +QAL L+
Sbjct: 536 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATILAAEDDAREALRQALHLH 595

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +R R L ++   +E  +       E ++T  L + L ++  QI + ++ EA+I+GFG  S
Sbjct: 596 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 648

Query: 646 GR 647
           GR
Sbjct: 649 GR 650


>gi|62290371|ref|YP_222164.1| DNA primase [Brucella abortus bv. 1 str. 9-941]
 gi|82700293|ref|YP_414867.1| DNA primase [Brucella melitensis biovar Abortus 2308]
 gi|189024599|ref|YP_001935367.1| DNA primase [Brucella abortus S19]
 gi|254697812|ref|ZP_05159640.1| DNA primase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730701|ref|ZP_05189279.1| DNA primase [Brucella abortus bv. 4 str. 292]
 gi|260546910|ref|ZP_05822649.1| DNA primase [Brucella abortus NCTC 8038]
 gi|260758421|ref|ZP_05870769.1| DNA primase [Brucella abortus bv. 4 str. 292]
 gi|260762247|ref|ZP_05874590.1| DNA primase [Brucella abortus bv. 2 str. 86/8/59]
 gi|62196503|gb|AAX74803.1| DnaG, DNA primase [Brucella abortus bv. 1 str. 9-941]
 gi|82616394|emb|CAJ11455.1| Mitochondrial substrate carrier:Zn-finger, CHC2 type:Toprim
           sub-domain:TOPRIM:DNA primase:Toprim, primase [Brucella
           melitensis biovar Abortus 2308]
 gi|189020171|gb|ACD72893.1| DNA primase [Brucella abortus S19]
 gi|260095960|gb|EEW79837.1| DNA primase [Brucella abortus NCTC 8038]
 gi|260668739|gb|EEX55679.1| DNA primase [Brucella abortus bv. 4 str. 292]
 gi|260672679|gb|EEX59500.1| DNA primase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 655

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 277/662 (41%), Positives = 400/662 (60%), Gaps = 27/662 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG  V +DR+K+N  KGD+WACCPFH EKTPSFHC D KG
Sbjct: 1   MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P   P++EK+E  +  L  +
Sbjct: 61  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARAPEMEKREAQRATLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L++A   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 121 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A    Q           +  II VEGYMDV++L QAG+ +VV+ LGT
Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  +LCFDGD  GLRAAY+A DL L  L PG  + F LL  G+DPD
Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G +AF  ++ ++ PLV+M+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468
           R +YSQ +R+R Q  F +        G+  +   R  +                S  L +
Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 475

Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           S+LVKG          LRE A++LTL+NHP +++E ++ LA +   ++ L+ L   +   
Sbjct: 476 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 535

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
               +      + + L + G G+L+K L++ V+ A LW+ATT A   D R+  +QAL L+
Sbjct: 536 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 595

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +R R L ++   +E  +       E ++T  L + L ++  QI + ++ EA+I+GFG  S
Sbjct: 596 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 648

Query: 646 GR 647
           GR
Sbjct: 649 GR 650


>gi|306843168|ref|ZP_07475786.1| DNA primase [Brucella sp. BO2]
 gi|306286646|gb|EFM58209.1| DNA primase [Brucella sp. BO2]
          Length = 656

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 278/663 (41%), Positives = 402/663 (60%), Gaps = 28/663 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG  V +DR+K+N  KGD WACCPFH EKTPSFHC D KG
Sbjct: 1   MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDLWACCPFHGEKTPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P  DP++EK+E  +  L  +
Sbjct: 61  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF + L++A   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 121 MELAAQFFENQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A    Q           +  II VEGYMDV++L QAG+ +VV+ LGT
Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  +LCFDGD  GLRAAY+A DL L  L PG  + F LL  G+DPD
Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G +AF  ++ ++ PLV+M+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-------------GPSQRLM 467
           R +YSQ +R+R Q  F +    +   G+  +   R  +                 S  L 
Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGYQNGGQRSQPFTRRNEGARGRGGPAGGSGRLAISDSLA 475

Query: 468 QSSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
           +S+LVKG          LRE A++LTL+NHP +++E ++ LA +   ++ L+ L   +  
Sbjct: 476 RSTLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLD 535

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                +      + + L + G G+L+K L++ V+ A LW+ATT A   D R+  +QAL L
Sbjct: 536 VLAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHL 595

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
           ++R R L ++   +E  +       E ++T  L + L ++  QI + ++ EA+I+GFG  
Sbjct: 596 HQRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLS 648

Query: 645 SGR 647
           SGR
Sbjct: 649 SGR 651


>gi|241205664|ref|YP_002976760.1| DNA primase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859554|gb|ACS57221.1| DNA primase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 669

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 312/665 (46%), Positives = 426/665 (64%), Gaps = 19/665 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ D+   +PISN+I + V WD+RKTN  +GDYWACCPFH EK+PSFHC D KG
Sbjct: 1   MRFSNTFLDDIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+VQ++A +AGVP+P+ DP +EK+EK +  LI +
Sbjct: 61  RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L+ +   R   YL +RG+    IE F+LGYAPDSR +L+E L  KG S+
Sbjct: 121 MEMATQFFQDQLQTSNGARARAYLRDRGLTGRTIETFRLGYAPDSRNALKEFLAGKGVSK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           ++I   GL++  +N   SYDRFR+R++FPI SSR +VIAFGGR +S     KYLNS ET 
Sbjct: 181 DQIEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSADAPAKYLNSNETE 239

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSS-SFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           LFHKG  LYNF  A   +Q   R D + +++   II VEGYMDV++L QAG++N V+ LG
Sbjct: 240 LFHKGNVLYNFARARRAIQGPGRGDPQDDNATGTIIAVEGYMDVIALHQAGIENAVAPLG 299

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE QL LLWK+ P+ +LCFDGD  G+RAA +A +L L HL PG  V F LL  G+DP
Sbjct: 300 TALTENQLELLWKMVPQPMLCFDGDGAGIRAANRAAELALPHLKPGRSVRFALLPDGKDP 359

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D  +R  G+  F+K++ ++ PL +MLW RE     F+TP+ RAELE  LK  +  I D+ 
Sbjct: 360 DDLVRDDGRAPFDKVMSQAKPLSEMLWSREVNTGKFDTPEARAELEARLKQLVAVIADEN 419

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR--------------HRDQKGPSQR 465
           +R +Y Q IRDRL   FQ      +   R    N                 +     S+R
Sbjct: 420 VRRHYQQDIRDRLNAFFQPQFQNRNNGDRRGGFNGNGNYRTGRDNAGKAGPKSPSVISER 479

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF-- 523
           L +S  V+G  +   +LRE  L LT++NHP+++ + Y E+A I YD+ ELQ+LWS +   
Sbjct: 480 LARSGPVRGHQNN-TALRECVLALTVVNHPSLMIDDYDEIAAIEYDSRELQRLWSAMLGA 538

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           +  V   +   E + +RL   GFG L+K LD+QVR+A LW AT EA + D R+GY+QALA
Sbjct: 539 AAAVAGPHLTREYLTERLEFEGFGPLIKSLDQQVRNARLWIATEEAAMEDAREGYRQALA 598

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
            +KR + L RQK E+E++IA  T  G+ E    L+    EVH +  ++E+QEA+I+GFG 
Sbjct: 599 SHKRAKALRRQKIELEREIALATEAGDGEAIVQLMRAQQEVHFEGVRLENQEAIIDGFGV 658

Query: 644 MSGRL 648
           +SGR+
Sbjct: 659 LSGRV 663


>gi|90418028|ref|ZP_01225940.1| putative DNA primase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337700|gb|EAS51351.1| putative DNA primase [Aurantimonas manganoxydans SI85-9A1]
          Length = 654

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 255/666 (38%), Positives = 382/666 (57%), Gaps = 36/666 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ D+   IPIS++IG+ V WDRRK+   +GD+WACCPFH EKTPSFHC D+KG
Sbjct: 1   MRFSPAFLDDIRDRIPISDVIGRRVTWDRRKSQPGRGDHWACCPFHGEKTPSFHCEDAKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+RLAA AGVP+P  D + E++E  +  ++  
Sbjct: 61  RYHCFGCGVSGDHFRFLTELEGLSFPEAVERLAAEAGVPMPARDAQAEQREAAKATIVDA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A+ FF   L+     +   YL +RG+  H  + F LGYAP+SR  L+E+L  KG   
Sbjct: 121 MRHASSFFQAMLQEPEGAKARAYLRDRGLTPHTQKKFGLGYAPNSRNRLKEYLASKGVGR 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            +I  AGL++ G+  A SYDRFR+R++FPI     + IAFGGR +S     KYLNSPET 
Sbjct: 181 SEIEAAGLVVHGEGIAVSYDRFRDRIMFPIVDLHDKPIAFGGRAMSAEAQAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG+ LYN   A    +          ++  +++VEGYMDV++L QAG +NVV+ LGT
Sbjct: 241 IFHKGQVLYNLGQARRAAK----------AAGTLVVVEGYMDVIALAQAGFENVVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW+ +   +LCFDGD  GL+AA+++ +L L  L PG  + F L+  G+DPD
Sbjct: 291 ALTERQLDLLWRSTGEPILCFDGDSAGLKAAHRSAELALPALKPGRSLRFALMPPGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G  AF ++   + PL D+LW RET    F+TP+ RA+LE  +K  +  + D+ +
Sbjct: 351 DLVREGGPDAFREIQGAARPLADLLWMRETAGGDFDTPERRADLEHRVKALLRQVGDESV 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-------------------KG 461
           R +Y Q + +RL+  F           R   ++ R   +                     
Sbjct: 411 RRHYLQDVEERLRSFFGGSAKTAGYGNRRDGRDNRGGGRDRDDHGGGPRRGGAAGGRRSA 470

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
            S RL +SSL++ +   +PSLRE A++L  +NHPA++ E++   AD+     +L +L S 
Sbjct: 471 ISDRLARSSLMRPQQGPQPSLREIAIVLGFVNHPALIHEEFDYFADLDLPTGDLDRLRSC 530

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +   + E      + +   L  RG  ++ +  + + R   LW   ++A   D R+  +QA
Sbjct: 531 VLDAYAESPPADRDALLAELQARGARDIFESYENKARMVRLWPFLSDAAPEDAREAVRQA 590

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           L L+ R R L+ + +  E+ + +       E +    + L EV  ++ +++  EA+IEGF
Sbjct: 591 LHLHHRSRALASELKLAEEALGR-------ESSEAAFAHLMEVKRELERVDGTEALIEGF 643

Query: 642 GKMSGR 647
           G +SGR
Sbjct: 644 GTLSGR 649


>gi|15966071|ref|NP_386424.1| DNA primase [Sinorhizobium meliloti 1021]
 gi|307305626|ref|ZP_07585373.1| DNA primase [Sinorhizobium meliloti BL225C]
 gi|307317629|ref|ZP_07597068.1| DNA primase [Sinorhizobium meliloti AK83]
 gi|15075341|emb|CAC46897.1| Probable DNA primase [Sinorhizobium meliloti 1021]
 gi|306896787|gb|EFN27534.1| DNA primase [Sinorhizobium meliloti AK83]
 gi|306902329|gb|EFN32925.1| DNA primase [Sinorhizobium meliloti BL225C]
          Length = 667

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 290/668 (43%), Positives = 413/668 (61%), Gaps = 27/668 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ ++   +PIS++IG+ V WDRRKTN  +GDYWACCPFH EK+PSFHC D KG
Sbjct: 1   MRFSPSFLDEIRDRVPISDVIGKRVTWDRRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+VQ++A +AGVP+P  DP+ E++E+ +T L+ +
Sbjct: 61  RYHCFGCGVSGDHFRFLTELEGLSFPEAVQQIADLAGVPMPQPDPQAEQRERERTSLLDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L+ A   +   YL ERG+    IE F+LG+APDSR +L+E L  KG  +
Sbjct: 121 MELATQFFQDQLQTANGAKARAYLRERGLTGRTIETFRLGFAPDSRNALKEFLAGKGIGK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ GD    SYDRFR+R++FPI S+R +VIAFGGR +S     KYLNS ET 
Sbjct: 181 EQIEACGLVVHGDGIPVSYDRFRDRIMFPIPSAREKVIAFGGRAMSPDAPAKYLNSNETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  L+NF  A        R     + +  II VEGYMDV++L QAG++N V+ LGT
Sbjct: 241 LFHKGNVLFNFARAR-------RASQGADGAGTIIAVEGYMDVIALHQAGIENAVAPLGT 293

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLWK++ + VLCFDGD  G+RAA++A+DL L HL PG  V F LL  G+DPD
Sbjct: 294 ALTENQLDLLWKMTTQPVLCFDGDGAGVRAAHRAVDLALPHLKPGRSVRFALLPEGKDPD 353

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G+  F+K++  +  L DM+W+RE +   F+TP++RAELE  L+   + I D+ +
Sbjct: 354 DVVRHDGREPFDKVLANARSLADMVWQREVQGGDFDTPEKRAELEARLRQVTSVIADESV 413

Query: 421 RYYYSQAIRDRLQQLF--------QKYITEHSGYGRYWKKNARHRDQKGP---------- 462
           R +Y Q +RDRL            ++   E  G     +          P          
Sbjct: 414 RRHYGQDMRDRLNAFLQGSAPFRGERRPFERGGRQAGRQGGRGWSPAPNPVMGAAVEAGT 473

Query: 463 -SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
                +   L  G   + P LRE+ L LT++NHP +L ++Y E+A I +D+ +LQ+ W+ 
Sbjct: 474 AGSSKLNQMLKAGGSLRPPVLRESVLALTIVNHPQLLFDEYDEIATIEFDHRDLQRCWAA 533

Query: 522 LFSDFVEQK-YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
           + +           E + ++L   GF  L+  LD+QVR A LW+AT  A   D R+GY Q
Sbjct: 534 VLNAAAANGLRLTRETLMEQLEAEGFSALIGALDQQVRYARLWTATAAAAPEDAREGYLQ 593

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           AL L++R + L  QK E+E++IA+ TA  + E+   L+  + EV +++H+++  EA+IEG
Sbjct: 594 ALTLHRRTKALLWQKRELEREIAEATASEDVEQGQRLVRAMEEVQLELHRMDKLEAIIEG 653

Query: 641 FGKMSGRL 648
           FG +SGR+
Sbjct: 654 FGVLSGRV 661


>gi|325293529|ref|YP_004279393.1| DNA primase [Agrobacterium sp. H13-3]
 gi|325061382|gb|ADY65073.1| DNA primase [Agrobacterium sp. H13-3]
          Length = 661

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 305/667 (45%), Positives = 433/667 (64%), Gaps = 33/667 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ ++   + IS++IG+ V WD++KTN  +GDYWACCPFH EK+PSFHC D KG
Sbjct: 1   MRFSNSFLDEIRDRVNISDVIGRRVSWDKKKTNTPRGDYWACCPFHGEKSPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+VQ++A +AG+ +P  DP+ EK+E+ +T L  +
Sbjct: 61  RYHCFGCGVSGDHFRFLTDLEGLSFPEAVQQIADMAGISMPQPDPQAEKRERERTSLQDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L+ A   R   YL +RG+    IE F+LG+APDSR +L+EHL  KG + 
Sbjct: 121 MEMATLFFQDQLQTALGARARAYLRDRGLTGRTIETFRLGFAPDSRNALKEHLASKGVAR 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E++   GL++  +N   SYDRFR+R++FPI SSR +VIAFGGR ++     KYLNS ET 
Sbjct: 181 EQMEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMAADAVAKYLNSNETE 239

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYNF  A             + S   +I VEGYMDV++L QAGV+N V+ LGT
Sbjct: 240 LFHKGNVLYNFARARRA---------SQASGGTVIAVEGYMDVIALYQAGVENAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLWK+SP+ +LCFDGD  G+RAA +A DL L H+ P   V+F LL  G+DPD
Sbjct: 291 ALTESQLDLLWKMSPQPILCFDGDGAGIRAANRAADLALPHIKPDRSVSFALLPDGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G+  F++++ E+ PL  M+W RET + +F+TP++RA+LE  L+  +  I D+ +
Sbjct: 351 DLVRLEGRAPFDRVLSEAKPLAAMIWSRETSSVTFDTPEKRAQLESRLRQIVAVIGDEAV 410

Query: 421 RYYYSQAIRDRLQQLFQKYITE------------HSGYGRYWKKNARHR------DQKGP 462
           R +Y Q +RDRL   FQ    +              G GR +++NA  R           
Sbjct: 411 RRFYQQDMRDRLNAFFQPRFQQGGSQGGNFRRDGQQGNGRGFQRNASGRGGAMAAPASNI 470

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           S RL QS LV+G  +K PSLRE+ L +T++NHP +L E+Y E+A I Y+N +LQ+LWS +
Sbjct: 471 SDRLTQSGLVRGHQTK-PSLRESVLAITIVNHPELLLEEYDEIAAIDYENRDLQRLWSTV 529

Query: 523 FSDFVE-QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
            +   E         + +RL ++GF  LLK +D+QVR+A LW+AT +A + D R+GY QA
Sbjct: 530 LTFAAESAAEISRAGLIERLSQQGFEVLLKTMDQQVRNARLWTATEQAALEDAREGYVQA 589

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           L+L+KR + L  QK E+E++I + T   + E+  +L+  L EV ++I ++E+QEA+I+GF
Sbjct: 590 LSLHKRTKSLLWQKRELEREIGEAT---DDERGTLLVRALAEVQLEIGRMENQEAIIDGF 646

Query: 642 GKMSGRL 648
           G MSGR+
Sbjct: 647 GVMSGRV 653


>gi|15889447|ref|NP_355128.1| DNA primase [Agrobacterium tumefaciens str. C58]
 gi|15157311|gb|AAK87913.1| DNA primase [Agrobacterium tumefaciens str. C58]
          Length = 661

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 305/667 (45%), Positives = 434/667 (65%), Gaps = 33/667 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ ++   + IS++IG+ V WD++KTNA +GDYWACCPFH EK+PSFHC D KG
Sbjct: 1   MRFSNSFLDEIRDRVNISDVIGRRVSWDKKKTNAPRGDYWACCPFHGEKSPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+VQ++A +AG+ +P  DP+ EK+E+ +T L  +
Sbjct: 61  RYHCFGCGVSGDHFRFLTELEGLSFPEAVQQIADMAGISMPQPDPQAEKRERERTSLQDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L+ +   R   YL +RG+    IE F+LGYAPDSR +L+EHL  KG S+
Sbjct: 121 MEMATLFFQDQLQTSLGARARAYLRDRGLTGRTIETFRLGYAPDSRNALKEHLASKGVSK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E++   GL++  +N   SYDRFR+R++FPI SSR +VIAFGGR ++     KYLNS ET 
Sbjct: 181 EQMEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMAADAVAKYLNSNETE 239

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYNF         +  +   + +   +I VEGYMDV++L QAGV+N V+ LGT
Sbjct: 240 LFHKGNVLYNF---------ARARRASQAAGGTVIAVEGYMDVIALYQAGVENAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT+ QL LLWK+SP+ VLCFDGD  G+RAA +A DL L H+ P   V+F LL  G+DPD
Sbjct: 291 ALTDSQLDLLWKMSPQPVLCFDGDGAGIRAANRAADLALPHIKPDRSVSFALLPDGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G+  F++++ E+ PL  M+W RET   +F+TP++RA+LE  L+  +  I D+ +
Sbjct: 351 DLVRLEGRAPFDRVLSEAKPLAAMIWSRETSGVTFDTPEKRAQLESRLRQIVTVIADETV 410

Query: 421 RYYYSQAIRDRLQQLFQKYITE------------HSGYGRYWKKNARHR------DQKGP 462
           R +Y Q +RDRL   FQ    +              G GR +++NA  R           
Sbjct: 411 RRFYQQDMRDRLNGFFQPRFQQGGSQGGNFRRDGGQGAGRGFQRNAPGRGGAMSAPASSI 470

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           S RL QS LV+G  +K PSLRE+ L +T++NHP +L E+Y E+A I Y+N +LQ+LWS +
Sbjct: 471 SDRLTQSGLVRGHQTK-PSLRESVLAITIVNHPELLLEEYDEIAAIDYENRDLQRLWSTV 529

Query: 523 FSDFVE-QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
            +   E         +  RL + GF  LLK +D+QVR+A LW+AT +A + D R+GY QA
Sbjct: 530 LTYAAESAADISRAGLIDRLSQHGFEPLLKTMDQQVRNARLWTATEQAAMEDAREGYVQA 589

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           L+L+KR + L  QK E+E++IA+ T   + E+  +L+  + EV ++I ++E+QEA+I+GF
Sbjct: 590 LSLHKRTKSLLWQKRELEREIAEAT---DDERGTLLVRAIAEVQLEIGRMENQEAIIDGF 646

Query: 642 GKMSGRL 648
           G MSGR+
Sbjct: 647 GVMSGRV 653


>gi|116253150|ref|YP_768988.1| DNA primase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257798|emb|CAK08896.1| putative DNA primase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 669

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 314/665 (47%), Positives = 426/665 (64%), Gaps = 19/665 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ D+   +PISN+I + V WD+RKTN  +GDYWACCPFH EK+PSFHC D KG
Sbjct: 1   MRFSNTFLDDIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+VQ++A +AGVP+P+ DP +EK+EK +  LI +
Sbjct: 61  RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L+ A   R   YL +RG+    IE F+LG+APDSR +L+E L  KG  +
Sbjct: 121 MEMATQFFQDQLQTANGARARAYLRDRGLTGRTIETFRLGFAPDSRNALKEFLAGKGVLK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++  +N   SYDRFR+R++FPI SSR +VIAFGGR +S     KYLNS ET 
Sbjct: 181 EQIEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSADAPAKYLNSNETE 239

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSS-SFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           LFHKG  LYNF  A   +Q   R D + +++   II VEGYMDV++L QAG++N V+ LG
Sbjct: 240 LFHKGNVLYNFARARRAIQGPGRGDPQDDNATGTIIAVEGYMDVIALYQAGIENAVAPLG 299

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE QL LLWK+ P+ VLCFDGD  G+RAA +A +L L HL PG  V F LL  G+DP
Sbjct: 300 TALTENQLELLWKMVPQPVLCFDGDGAGIRAANRAAELALPHLKPGRSVRFALLPDGKDP 359

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D  +R  G+  F+K++ ++ PL +MLW RE  N  F+TP+ RAELE  LK  +  I D+ 
Sbjct: 360 DDLVRDDGRAPFDKVMSQAKPLSEMLWSREVNNGKFDTPEARAELEARLKQLVAVIADEN 419

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR--------------HRDQKGPSQR 465
           +R +Y Q IRDRL   FQ      +   R    N                 +     S+R
Sbjct: 420 VRRHYQQDIRDRLNIFFQPQFQNRNNGDRRGGFNGNGNYRTGRDNAGKAGPKSPSVISER 479

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF-- 523
           L +S  V+G  +   +LRE  L LT++NHP+++ + Y E+A I YD+ ELQ+LWS +   
Sbjct: 480 LARSGPVRGHQNN-TALRECVLALTVVNHPSLMIDDYDEIAAIEYDSRELQRLWSAMLGA 538

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           +  V   +   E + +RL   GFG L+K LD+QVR+A LW AT EA + D R+GY+QALA
Sbjct: 539 AAAVAGPHLTREYLTERLEFEGFGPLIKSLDQQVRNARLWIATEEAAMEDAREGYRQALA 598

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
            +KR + L RQK E+E++IA  T  G+ E    L+    EVH +  ++E+QEA+I+GFG 
Sbjct: 599 SHKRAKALRRQKIELEREIALATEAGDGEAIVQLMRAQQEVHFEGVRLENQEAIIDGFGV 658

Query: 644 MSGRL 648
           +SGR+
Sbjct: 659 LSGRV 663


>gi|90422489|ref|YP_530859.1| DNA primase [Rhodopseudomonas palustris BisB18]
 gi|90104503|gb|ABD86540.1| DNA primase [Rhodopseudomonas palustris BisB18]
          Length = 680

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 234/697 (33%), Positives = 362/697 (51%), Gaps = 72/697 (10%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ +L   +P+S ++G+ V   +        ++    PF  EK+PSF  ND KG
Sbjct: 1   MRFTPQFLDELRARLPVSEVVGRRVKLKKAGR-----EWKGLSPFQQEKSPSFTVNDQKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+ FS    GD +SF+    GC F E+V+RLA +AGVPLP V P   ++E+ +  L  +
Sbjct: 56  FYHDFSSGKHGDIISFVMETDGCGFTEAVERLAQMAGVPLPAVTPDAARQEQRRKSLYDV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +++A  FF  +L   +  R   YL +R +       F++GYAP  R++L+EHL + G   
Sbjct: 116 MDLAAKFFADTLAARQGARARGYLADRAMSPATQLKFRIGYAPGERFALKEHLGKLGIPV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E ++EAGLLI G++    +DRFR+R++FPI   RG+VIAFGGR L K    KYLNSPET 
Sbjct: 176 EDMVEAGLLISGEDIPVPFDRFRDRVMFPIADVRGRVIAFGGRALEKDVPAKYLNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG NLYN   A                 + +I+VEGY+DV+++  AG    V+ LGT
Sbjct: 236 LFHKGDNLYNLAVARAAAH----------DGAPLIVVEGYVDVIAMVGAGYAATVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL+LLWK++   +LCFDGD  G +AA++A D+ L HL PG  + F LL  G+DPD
Sbjct: 286 ALTENQLQLLWKMADEPILCFDGDKAGQKAAWRAADMALPHLAPGKSLRFALLPEGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R  G+ A +++I  +  L D+LW RE ++ SF TP+ RA LE  +    N I+D+ L
Sbjct: 346 DLARSGGRAAIDEVIGSARGLADVLWTREIQSGSFATPERRAALEARINELTNGIRDEVL 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEH----------------------------------SGY 446
           R YY Q + +RL+  F                                            
Sbjct: 406 RRYYRQDMAERLRSAFAPQGGFGGRGGYGRGGPRGGGGGGFGGESGRGFPQRSAFTPGAA 465

Query: 447 GRYWKKNAR----------HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           GR   +  R          +R     +   + SS +        S REA +LLTL+NHP 
Sbjct: 466 GRMQPRGGRGAVSAGSQTINRMPYQVASPDLASSPIMRGQRSAISRREALILLTLLNHPW 525

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL------PEEIHQRLCERGFGELL 550
           +L ++ +E+A +   + E  +L + + + F    +          ++   L   G  E L
Sbjct: 526 LLHDRLEEVAALELAHPEAHRLRAGIIAAFANDYHHTGSPGEPSAKLRADLAAAGLSEQL 585

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           ++++R +    +W+A  +A   DV   + Q +AL++++  L R+ ++ E  +        
Sbjct: 586 QRVERAITTNDVWAAGPDAAPEDVLSTWHQLVALHRQWHSLLRELKDAELALGD------ 639

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
            +++      L +V  ++ +++  EA+IEGFG+ SGR
Sbjct: 640 -QQSEANFGWLRDVKARLAEVDGTEALIEGFGESSGR 675


>gi|190892704|ref|YP_001979246.1| DNA primase [Rhizobium etli CIAT 652]
 gi|190697983|gb|ACE92068.1| DNA primase protein [Rhizobium etli CIAT 652]
          Length = 666

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 310/661 (46%), Positives = 421/661 (63%), Gaps = 14/661 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ ++   +PISN+I + V WD+RKTN  +GDYWACCPFH EK+PSFHC D KG
Sbjct: 1   MRFSNTFLDEIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+VQ++A +AGVP+P+ DP +EK+EK +  LI +
Sbjct: 61  RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L+ A   +   YL +RG+    IE F+LGYAPDSR +L+E L  KG S+
Sbjct: 121 MEMATAFFQDQLQTANGAKARAYLRDRGLTGRTIETFRLGYAPDSRNALKEFLAGKGVSK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++  +N   SYDRFR+R++FPI SSR +VIAFGGR +S     KYLNS ET 
Sbjct: 181 EQIEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSADAPAKYLNSNETE 239

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSS-SFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           LFHKG  LYNF  A   +Q   R D + +++   II VEGYMDV++L QAGV+N V+ LG
Sbjct: 240 LFHKGNVLYNFARARRAIQGPGRGDQQDDNASGTIIAVEGYMDVIALHQAGVENAVAPLG 299

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE QL LLWK+ P+ VLCFDGD  G+RAA +A +L L HL PG  V F LL  G+DP
Sbjct: 300 TALTENQLELLWKMVPQPVLCFDGDGAGIRAANRAAELALPHLKPGRSVRFALLPDGKDP 359

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D  +R  G+  F+K++ ++ PL +MLW RE     F+TP+ RAELE  LK  +  I D+ 
Sbjct: 360 DDLVRDEGRAPFDKVMSQAKPLSEMLWSREINTGKFDTPEARAELEARLKQLVAVIADEN 419

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-------- 471
           +R +Y Q IRDRL   FQ      +   R          +  P +   +S          
Sbjct: 420 VRRHYQQDIRDRLNAFFQPQFQNRNNSERRGFGGNSRNGRDNPGKAGPKSPSLISDRLAR 479

Query: 472 --VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS--FLFSDFV 527
                      +LRE+ L LT++NHPA++ + Y E+A I YD+ +LQ+LWS     +  V
Sbjct: 480 SGPVRGHRDNTALRESVLALTIVNHPALMIDDYDEIAAIEYDSRKLQRLWSAVLGAAAAV 539

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
              +   E + +RL   GFG L+K LD+QVR+A LW+AT EA + D R+GY+QALA +KR
Sbjct: 540 AGPHLTREYLTERLEFEGFGPLIKSLDQQVRNARLWTATEEAAMEDAREGYRQALAFHKR 599

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
            + L RQK E+E++IA  T  G+ E    LI    EVH++  ++E+QEA+I+GFG +SGR
Sbjct: 600 AKALRRQKMELEREIALATEAGDGEAIVQLIRAQQEVHLEGVRLENQEAIIDGFGVLSGR 659

Query: 648 L 648
           +
Sbjct: 660 V 660


>gi|327192723|gb|EGE59660.1| DNA primase protein [Rhizobium etli CNPAF512]
          Length = 666

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 308/661 (46%), Positives = 420/661 (63%), Gaps = 14/661 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ ++   +PISN+I + V WD+RKTN  +GDYWACCPFH EK+PSFHC D KG
Sbjct: 1   MRFSNTFLDEIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+VQ++A +AG+P+P+ DP +EK+EK +  LI +
Sbjct: 61  RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGIPMPLADPVMEKREKERGSLIDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L+ A   +   YL +RG+    IE F+LGYAPDSR +L+E L  KG S+
Sbjct: 121 MEMATAFFQDQLQTANGAKARAYLRDRGLTGRTIETFRLGYAPDSRNALKEFLAGKGVSK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++  +N   SYDRFR+R++FPI SSR +VIAFGGR +S     KYLNS ET 
Sbjct: 181 EQIEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSADAPAKYLNSNETE 239

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSS-SFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           LFHKG  LYNF  A   +Q   R D + +++   II VEGYMDV++L QAGV+N V+ LG
Sbjct: 240 LFHKGNVLYNFARARRAIQGPGRGDPQDDNASGTIIAVEGYMDVIALHQAGVENAVAPLG 299

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE QL LLWK+ P+ VLCFDGD  G+RAA +A +L L HL PG  V F LL  G+DP
Sbjct: 300 TALTENQLELLWKMVPQPVLCFDGDGAGIRAANRAAELALPHLKPGYSVRFALLPDGKDP 359

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D  +R  G+  F+K++ ++ PL +MLW RE     F+TP+ RAELE  LK  +  I D+ 
Sbjct: 360 DDLVRDEGRAPFDKVMSQAKPLSEMLWSREINTGKFDTPEARAELEARLKQLVAVIADEN 419

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-------- 471
           +R +Y Q IRDRL   FQ      +   R          +    +   +S          
Sbjct: 420 VRRHYQQDIRDRLNAFFQPQFQNRNNGERRGFSGNSRNGRDNAGKAGPKSPSLISDRLAR 479

Query: 472 --VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS--FLFSDFV 527
                      +LRE+ L LT++NHPA++ + Y E+A I YD+ ELQ+LWS     +  V
Sbjct: 480 SGPVRGHRDNTALRESVLALTIVNHPALMIDDYDEIAAIEYDSRELQRLWSAVLGAAAAV 539

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
              +   + + +RL   GFG L+K LD+QVR+A LW+AT EA + D R+GY+QALA +KR
Sbjct: 540 AGPHLTRDYLTERLEFEGFGPLIKSLDQQVRNARLWTATEEAAMEDAREGYRQALAFHKR 599

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
            + L RQK E+E++IA  T  G+ E    LI    EVH++  ++E+QEA+I+GFG +SGR
Sbjct: 600 AKALRRQKMELEREIALATEAGDGEAIVQLIRAQQEVHLEGVRLENQEAIIDGFGVLSGR 659

Query: 648 L 648
           +
Sbjct: 660 V 660


>gi|146338437|ref|YP_001203485.1| DNA primase [Bradyrhizobium sp. ORS278]
 gi|146191243|emb|CAL75248.1| DNA primase [Bradyrhizobium sp. ORS278]
          Length = 668

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 232/683 (33%), Positives = 358/683 (52%), Gaps = 59/683 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            +  +F+ +L   +P+S+++G+ V   +        ++    PF  EKTPSF+ ND KGF
Sbjct: 3   RFTPEFLDELRARLPVSDVVGKRVKLKKAGR-----EWKGLSPFQQEKTPSFYVNDQKGF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+ FS    G+   F+    GCSF E+V+RLA +AG+ LPV  P   ++ + +  L  ++
Sbjct: 58  YHDFSSGKHGNIFDFIMETEGCSFPEAVERLAGLAGLALPVATPDAAREARQRKTLYDVM 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E+A  FF  +L +    R   YL +R I       F+LGYAP  R++L+EHL  +G    
Sbjct: 118 ELAAKFFADTLASRHGARARGYLADRAILPQTQLQFRLGYAPPDRFALKEHLGAQGVPVN 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            ++EAGLLI G++    YDRF++R++FPI   RG+VIAFGGR + K    KYLNSPET L
Sbjct: 178 DMVEAGLLIGGEDIPVPYDRFKDRVMFPITDLRGRVIAFGGRAMQKDVPAKYLNSPETPL 237

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHKG NLYN   A               + + +I+VEGY+DV++L  AG    V+ LGTA
Sbjct: 238 FHKGDNLYNLASARQAAH----------NGAPMIVVEGYVDVIALVAAGFAGAVAPLGTA 287

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE QL L+WK+    +LCFDGD  G +AA++A D+ L  L PG  + F LL  G+DPD 
Sbjct: 288 LTESQLSLIWKMVDEPILCFDGDRAGQKAAHRAADIALPLLKPGKSLRFALLPEGQDPDD 347

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +R  G+ A E+++  + PL +++W RE E  SFNTP+ RA LE  +      I D+ +R
Sbjct: 348 LVRSGGRGAVEEVLKIAKPLAEVIWSREIEGGSFNTPERRAALEARIGQLTGAIADEVVR 407

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR-------------------------- 455
            YY Q + +RL Q F          G   +   R                          
Sbjct: 408 RYYKQDLSNRLYQAFAPDGGRRFSRGFGAESGRRIAPRGPGSGQQGRLSTGGGRRGGPPS 467

Query: 456 -----HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
                 R     +   +  S +        S REA +L  LINHP +L +  +E+A +  
Sbjct: 468 TGPAMARGPYMAASPQLAMSPIMRGQRSAISRREALILQCLINHPWLLHDHLEEIAALEL 527

Query: 511 DNNELQKLWSFLFSDFVEQKYFLP------EEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
            + E  KL + + + F    +  P      E++   L + GF ELL++++R +    +W+
Sbjct: 528 AHPEAHKLRAAIIAAFAHDHHHSPDPNEQAEKMRADLEKGGFSELLQRVERAITTPAVWA 587

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           A   A   DV   + Q +AL++++  L R+ ++ E  + +  ++         +  L +V
Sbjct: 588 AKPGAARDDVLATWHQLVALHRQWHSLLRELKDAELALGEDPSEPN-------MGWLRDV 640

Query: 625 HIQIHQIESQEAMIEGFGKMSGR 647
             ++ +++  EA+IEGFG++SGR
Sbjct: 641 KARMAEMDGTEALIEGFGELSGR 663


>gi|158425266|ref|YP_001526558.1| DNA primase [Azorhizobium caulinodans ORS 571]
 gi|158332155|dbj|BAF89640.1| DNA primase [Azorhizobium caulinodans ORS 571]
          Length = 643

 Score =  509 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 235/661 (35%), Positives = 355/661 (53%), Gaps = 38/661 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +P+S ++G+ V   ++       ++    PF+ EKTPSF  ND KG
Sbjct: 1   MRFPPSFLDEIRTRLPVSEVVGRRVKLKKQGR-----EFAGLSPFNAEKTPSFFVNDQKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CFS    GD   FL    G  F E+V+RLA++AG+PLP V P+   KE  +  L  +
Sbjct: 56  FYHCFSSGKHGDVFDFLMETEGLPFGEAVERLASMAGLPLPDVTPEAAAKEARRRTLHEV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L+     +   YL +RG+     + F+LGYAP  R++L+E L + G   
Sbjct: 116 MEMAAAFFEAELQARAGAKARGYLSDRGLGPSTQKRFRLGYAPGDRFALKEALGKAGVPV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             ++E GLLI GD+    YDRFR+R++FPI   +G+V+AFGGR L K    KYLNSPET 
Sbjct: 176 SDMVETGLLIAGDDIPVPYDRFRDRVMFPITDLKGRVVAFGGRALEKDVPAKYLNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN + A   +QK           + +I VEGY+DV++L +AG +  V+ LGT
Sbjct: 236 LFHKGSLLYNAYSARAAVQK----------GAPVIAVEGYVDVIALVEAGFEGAVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL+LLW+++   VL FDGD  G RAA++A+ L L H+ PG  ++F  L  G+DPD
Sbjct: 286 ALTEEQLQLLWRMADEPVLLFDGDKAGRRAAFRAVGLALPHIKPGKSLSFGALPDGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G+ A E ++ ++ PL  MLW RETE  +  TP+ RA LE  +   +  I+D+ +
Sbjct: 346 DLIRASGREAMEGVLAQAQPLSAMLWARETEGSNLETPERRAALEARIGEAVAAIQDENV 405

Query: 421 RYYYSQAIRDRLQQLFQKYITE--------------HSGYGRYWKKNARHRDQKGPSQRL 466
           R +Y Q ++DRL++L                      SG  R             P   L
Sbjct: 406 RRHYKQDLQDRLRRLLSPGSENRPRRFEGGWSAAPGRSGNFRPQNGRFMREPPLVPGTEL 465

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
            +S++V+G L+  P   EA LL  LINHP ++ E  +E+A + + N +  +L   L    
Sbjct: 466 ARSAVVRGPLASLPRN-EALLLFCLINHPWLMDEYAEEVAGLPFANKDADRLRRALLEAH 524

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           +E  +   E + + L       L +++         W A  +    D R  + Q  AL++
Sbjct: 525 LEGAH-EGEALTEHLTREDLDALAQRVRAFANPKMDWPAYPDTAPEDARLWWLQRAALHQ 583

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
           +   LS++  E E+ +        ++ +    + L +V  ++   E  EA++EGFG  SG
Sbjct: 584 KAYALSKELREAERSLG-------SDPSEANFAWLRDVRERLSAAEGTEALVEGFGASSG 636

Query: 647 R 647
           R
Sbjct: 637 R 637


>gi|222149283|ref|YP_002550240.1| DNA primase [Agrobacterium vitis S4]
 gi|221736267|gb|ACM37230.1| DNA primase [Agrobacterium vitis S4]
          Length = 678

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 301/677 (44%), Positives = 428/677 (63%), Gaps = 37/677 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +  DF+ ++   +PIS +IG  V WDR+KTN  +GDYWACCPFH EK+PSFHC D KG
Sbjct: 1   MRFSNDFLDEIRDRVPISAVIGARVPWDRKKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G +F E+V+R+A +AG+ +P VD +  ++E+ +T L  +
Sbjct: 61  RYHCFGCGVSGDHFRFLTDLEGLNFPEAVERIADMAGIAMPKVDARDIERERERTSLQDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L+ A+  +   YL ERG+    IE F+LGYAP+SR +L+EHL  KG  +
Sbjct: 121 MEMATLFFQDQLQAAQGAKARAYLRERGLSGRTIETFRLGYAPESRNALKEHLAGKGVPK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G +   SYDRFR+R++FPI SSR +VIAFGGR +S     KYLNS ET 
Sbjct: 181 EQIEACGLVVHGPDIPVSYDRFRDRIMFPILSSRDKVIAFGGRAMSPDAPAKYLNSNETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN+  A        R     + +  II VEGYMDV++L QAGV+N V+ LGT
Sbjct: 241 LFHKGNVLYNYSRAR-------RTLQGADGAETIIAVEGYMDVIALYQAGVENAVAPLGT 293

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL L+WK++P+ VLCFDGD  G RAA++A+DL L HL PG  V F +L  G+DPD
Sbjct: 294 ALTENQLELMWKMTPQPVLCFDGDGAGQRAAFRAVDLALPHLKPGKSVRFAMLPDGKDPD 353

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G+  F++++ E+  L +M+W RET    F+TP++RAELE  LK  +N I D+ +
Sbjct: 354 DLVKQDGRAPFDRVLAEARSLDEMVWLRETGQGRFDTPEQRAELEARLKQIVNIIADENV 413

Query: 421 RYYYSQAIRDRLQQLFQKYITE----------------------------HSGYGRYWKK 452
           R +Y Q +RDRL   FQ                                  +  G     
Sbjct: 414 RRHYQQNVRDRLYGFFQGRGQGQGAGRAGRGNFERGGGGFTGNRPGNGRFQNNAGGRGAP 473

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
             +       S RL +S +V  +   +PSLRE+ L LT++NHP +LQE Y E++ I +D+
Sbjct: 474 AGQRPGSTMASDRLTRSGMV-SRSHDQPSLRESVLALTIVNHPQLLQEDYDEISCIDFDS 532

Query: 513 NELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
            +LQ+LW  + +   +       E++++RL   GF  LLK LD+Q+R+A LW+ATT A +
Sbjct: 533 RDLQRLWPAVLTAVAQTGAQLTREDLYERLMSGGFDALLKALDQQIRNARLWTATTVAAL 592

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            D R+GY QAL+L+KR + L RQ+ E+E++IA+ T   +A +   L+S+L EV ++I ++
Sbjct: 593 EDAREGYTQALSLHKRAKALRRQRIELEREIAEATEADDAGRIDGLMSVLQEVQLEIVRM 652

Query: 632 ESQEAMIEGFGKMSGRL 648
           E+QEA+I+GFG MSGR+
Sbjct: 653 ENQEAIIDGFGVMSGRV 669


>gi|150397427|ref|YP_001327894.1| DNA primase [Sinorhizobium medicae WSM419]
 gi|150028942|gb|ABR61059.1| DNA primase [Sinorhizobium medicae WSM419]
          Length = 671

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 284/672 (42%), Positives = 416/672 (61%), Gaps = 31/672 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ ++   +PIS+++G+ V WDRRKTN  +GDYWACCPFH EK+PSFHC D KG
Sbjct: 1   MRFSPSFLDEIRDRVPISDVVGKRVTWDRRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+VQ++A +AGV +P  DP+ E++E+ +T L+ +
Sbjct: 61  RYHCFGCGVSGDHFRFLTELEGLSFPEAVQQIADMAGVAMPQPDPQAEQRERERTSLLDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L++A   +   YL ERG+    IE F+LG+APDSR +L+E L  KG  +
Sbjct: 121 MELATHFFQDQLQSATGAKARAYLRERGLTGRTIETFRLGFAPDSRNALKEFLAGKGIGK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G +   SYDRFR+R++FPI S+R +VIAFGGR +S     KYLNS ET 
Sbjct: 181 EQIEACGLVVHGPDIPVSYDRFRDRIMFPILSAREKVIAFGGRAMSPDAPAKYLNSNETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  L+NF  A        R     + +  II VEGYMDV++L QAG++N V+ LGT
Sbjct: 241 LFHKGNVLFNFTRAR-------RASQGADGAGTIIAVEGYMDVIALHQAGIENAVAPLGT 293

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLWKL+ + VLCFDGD  G+RAA++A+DL L HL PG  V F +L  G+DPD
Sbjct: 294 ALTENQLDLLWKLTAQPVLCFDGDGAGIRAAHRAVDLALPHLKPGRSVRFAMLPEGKDPD 353

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G+  F++++  +  L DM+W RE +   F+TP++RAELE  L+     I D+ +
Sbjct: 354 DVVRQDGREPFDRVLANARSLADMVWLREVQGGDFDTPEKRAELEGRLRQVSAVIADESV 413

Query: 421 RYYYSQAIRDRLQQLFQ---KYITEHSGYGRYWKKNARHR-------------------- 457
           R +Y Q +RDRL    Q    +  E   + R  ++                         
Sbjct: 414 RRHYGQDMRDRLNAFLQGSAPFRGERRPFDRGGRQGGGQAGRQGGRGWSRAANPVLGAAV 473

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
           +        +   +  G   + P LRE+ L LT++NHP +L ++Y E+A I +D+ +LQ+
Sbjct: 474 EAGTAGSSKLNQMMKAGGSLRPPVLRESVLALTIVNHPQLLFDEYDEIATIEFDHRDLQR 533

Query: 518 LWSFLFSDFVEQK-YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            W+ + +           E + ++L   GF +L+  LD+Q+R+A LW+AT  A   D R+
Sbjct: 534 CWAAVLNAAAANGLRLTRETLLEQLEAEGFSQLIGALDQQIRNARLWTATEAAAPEDARE 593

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           GY QAL L++R + L  QK E+E++IA+ TA  +A++   L+  + EV +++H+++  EA
Sbjct: 594 GYLQALTLHRRTKALLWQKRELEREIAEATASEDADQGQRLVRAMEEVQLELHRMDKLEA 653

Query: 637 MIEGFGKMSGRL 648
           +IEGFG +SGR+
Sbjct: 654 IIEGFGVLSGRV 665


>gi|148257987|ref|YP_001242572.1| DNA primase [Bradyrhizobium sp. BTAi1]
 gi|146410160|gb|ABQ38666.1| DNA primase [Bradyrhizobium sp. BTAi1]
          Length = 671

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 239/686 (34%), Positives = 360/686 (52%), Gaps = 62/686 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            +   F+ +L   +P+S+++G+ V   +        ++    PF  EKTPSF+ ND KGF
Sbjct: 3   RFTPQFLDELRARLPVSDVVGKRVKLKKAGR-----EWKGLSPFQQEKTPSFYVNDQKGF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+ FS    G+   F+    GCSF E+V+RLA++AG+PLP V P   ++E+ +  L  ++
Sbjct: 58  YHDFSSGKHGNIFDFVMETEGCSFPEAVERLASLAGLPLPAVTPDAARQERQRKTLYDVM 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E+A  FF  +L +    R   YL +R I       F+LGYAP  R+ L+E L  +G    
Sbjct: 118 ELAAKFFTDTLASRHGARARGYLADRAILPQTQLQFRLGYAPPDRFGLKEFLGAQGVPVN 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            ++EAGLL+ GD+    YDRFR+R++FPI   RG+VIAFGGR L K    KYLNSPET L
Sbjct: 178 DMVEAGLLVGGDDIPVPYDRFRDRVMFPIADLRGRVIAFGGRALQKDVPAKYLNSPETPL 237

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHKG NLYN   A               + + +I+VEGY+DV++L  AG    V+ LGTA
Sbjct: 238 FHKGDNLYNLQSARQAAH----------NGAPMIVVEGYVDVIALVAAGFAGAVAPLGTA 287

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE QL L+WK+    +LCFDGD  G +AAY+A DL L HL PG  + F LL  G+DPD 
Sbjct: 288 LTESQLALIWKMVDEPILCFDGDRAGQKAAYRAADLALPHLQPGKSLRFALLPEGQDPDD 347

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +R  G+ A E+++  + PL +++W RE E  SF TP+ RA LE  +    N I+D+ +R
Sbjct: 348 LVRTGGRGAVEEVLAVAKPLAEVIWSREIEGGSFTTPERRAALEARIGELTNSIRDEVVR 407

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR-------------------------- 455
            YY Q + +RL + F        G G   +   R                          
Sbjct: 408 RYYKQDLTERLYRAFAPEGGRGFGRGYGAESGRRFGVRSPGSGQPGRLSTGGGGKGRRGG 467

Query: 456 --------HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                    R     +   +  S +        S REA +L  LINHP +L +  +E+A 
Sbjct: 468 APSTGPAMARGPYMAASPQLAMSPIMRGQRSAISRREALILQCLINHPWLLHDHLEEVAA 527

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLP------EEIHQRLCERGFGELLKQLDRQVRDAG 561
           +   + E  KL + + + F    +  P      E++   L   GF ELL++++R +  A 
Sbjct: 528 LELAHPEAHKLRAAIIAAFAHDHHHSPDPDEQAEKMRADLENSGFSELLQRVERAITTAA 587

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
           +W+A   A   DV   + Q + L++++  L R+ ++ E  + +       E +   +  L
Sbjct: 588 VWAARPGAARDDVLATWHQLVTLHRQWHSLLRELKDAELALGE-------EPSEPNMGWL 640

Query: 622 HEVHIQIHQIESQEAMIEGFGKMSGR 647
            +V  ++ +I+  EA++EGFG++SGR
Sbjct: 641 RDVKARMAEIDGTEALVEGFGELSGR 666


>gi|153009016|ref|YP_001370231.1| DNA primase [Ochrobactrum anthropi ATCC 49188]
 gi|151560904|gb|ABS14402.1| DNA primase [Ochrobactrum anthropi ATCC 49188]
          Length = 656

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 278/663 (41%), Positives = 394/663 (59%), Gaps = 28/663 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG    +DR+K+N  KGD+WACCPFH EKTPSFHC D KG
Sbjct: 1   MRFPPSFLDEIRDRVPISTLIGTRASFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P  DP++EK+E  +  L  +
Sbjct: 61  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF + L++A   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 121 MELAAQFFENQLQSAVGAKARAYLRDRGLSTATQQSFRIGYAPESRNALKEFLAGKGVSR 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A         +      +  II VEGYMDV++L QAG+  VV+ LGT
Sbjct: 241 LFHKGRVLYNGLRARKAC-----QPQAGEPAKSIIAVEGYMDVIALAQAGIHQVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  VLCFDGD  GLRAAY+A+DL L  L PG  + F LL  G+DPD
Sbjct: 296 ALTEEQLELLWRISPEPVLCFDGDGAGLRAAYRAVDLGLPALQPGKSLRFALLPEGQDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G  AF  ++ ++ PLVDM+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 356 DLVKAEGPAAFHVVLRDARPLVDMVWTRETTGGVFDTPERRAELEARLREITSRIANEDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-------------GPSQRLM 467
           R +YSQ +RDR Q  F +    +   G+      R  D                 S  L+
Sbjct: 416 RRHYSQDMRDRAQAFFGQGRQGYQVGGQRNSSFNRRNDGGRGRGGPAGGNGRLAISDSLV 475

Query: 468 QSSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
           +S+LVKG          LRE A++LTL+NHP +++E ++ LA +   +  L+ L   +  
Sbjct: 476 RSTLVKGGRPGAGSHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHEALKSLHLAMLD 535

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                       +   L   G GE ++ L+  V+ A LW+AT  A   D R+  +QAL L
Sbjct: 536 VLAAGHMEDGHAMRHALVNAGHGEQIEMLELVVKGAKLWTATALAAEDDAREALRQALHL 595

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
           ++R R L ++   +E  +       E ++T  L + L ++  QI + ++ EA+I+GFG  
Sbjct: 596 HQRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLS 648

Query: 645 SGR 647
           SGR
Sbjct: 649 SGR 651


>gi|163761138|ref|ZP_02168215.1| DNA primase [Hoeflea phototrophica DFL-43]
 gi|162281689|gb|EDQ31983.1| DNA primase [Hoeflea phototrophica DFL-43]
          Length = 680

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 275/670 (41%), Positives = 409/670 (61%), Gaps = 37/670 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            +   F+ D+   +PIS++IG++V WDR+KTN  +GD+WACCPFH EK+PSFHC D KG 
Sbjct: 17  RFSPSFLDDIRERVPISDVIGRHVTWDRKKTNTSRGDWWACCPFHGEKSPSFHCEDRKGR 76

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C V GDH  FL+ L   +F E+V+R+A +AGV +P  DP+  ++E+ +  L  ++
Sbjct: 77  YHCFGCGVSGDHFKFLTELENLNFPEAVERIADMAGVAMPAPDPEAARREQKRASLEDVM 136

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E+A +FF   L+ A   +   YL +RG+    I  F+LGY+PDSR +L+EHL  +G  ++
Sbjct: 137 EMAAEFFESQLQGAEGAKARAYLRDRGLSGRTIVAFRLGYSPDSRSALKEHLASRGVDKD 196

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           +I   GL++ G + A SYDRFR+R++FPI SSR +VIAFGGR LS     KYLNS ET L
Sbjct: 197 QIEACGLVVHGPDIAVSYDRFRDRIMFPILSSRERVIAFGGRALSPTAPAKYLNSNETEL 256

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHK   LYNF  A                   +++VEGYMDV++L QAGV+N V+ LGTA
Sbjct: 257 FHKSNVLYNFARARRA----------CGQDGTLVVVEGYMDVIALAQAGVENAVAPLGTA 306

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE QL+L+W+++P+ VLCFDGD+ G RAA +  DL L  + PG  + F +L  G+DPD 
Sbjct: 307 LTENQLKLIWRVTPQPVLCFDGDEAGQRAANRTADLALPLIAPGRSLRFAVLPPGKDPDD 366

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +R  G+  F++L+ ++  L D++W RE  +  F TP+ RAELE  L+   + I D+ +R
Sbjct: 367 LVRQDGRAPFDQLLEQARALADVVWSREAGSGVFETPESRAELEARLRQITSQIADESVR 426

Query: 422 YYYSQAIRDRLQQLFQKYITEHSG-----------------------YGRYWKKNARHRD 458
            +Y Q +R+R+Q  F                                      ++ +   
Sbjct: 427 RHYQQDMRERMQAFFGGGGYGQRNGDGRGGYQRGGGGRGGSERGYGGGRGGGPQSMQSSR 486

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
               S+RL +S LV+G   + PSLRE  L++T+ NHP +L E + EL+ + +D+  L ++
Sbjct: 487 GLAVSERLTRSGLVRGH-GEMPSLRETVLVMTVANHPQMLHEDFDELSTLEFDDKGLMRI 545

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           W  +         F  E +++ L   G GELL +L+ QVR+A +W+AT EA   D R+GY
Sbjct: 546 WQVMLDAASVGGRFDRERLYEALEAEGQGELLARLESQVRNARIWTATVEAAAEDAREGY 605

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            QALAL+KR R L  QK E+E+ I +     +AE++  +++ L +V ++I ++E+QEA+I
Sbjct: 606 SQALALHKRTRDLKWQKAELERDIVECE---DAEQSYAIMAALQQVQLEIARLENQEAII 662

Query: 639 EGFGKMSGRL 648
           +GFG +SGR+
Sbjct: 663 DGFGVLSGRV 672


>gi|209550283|ref|YP_002282200.1| DNA primase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209536039|gb|ACI55974.1| DNA primase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 666

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 307/661 (46%), Positives = 420/661 (63%), Gaps = 14/661 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ D+   +PISN+I + V WD+RKTN  +GDYWACCPFH EK+PSFHC D KG
Sbjct: 1   MRFSNTFLDDIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+VQ++A +AGVP+P+ DP +EK+EK +  LI +
Sbjct: 61  RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L+ A   R   YL +RG+    IE F+LGYAPDSR +L+E+L  KG ++
Sbjct: 121 MEMATQFFQDQLQTANGARARAYLRDRGLTGRTIETFRLGYAPDSRNALKEYLAGKGVTK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++  +N   SYDRFR+R++FPI SSR +VIAFGGR +S     KYLNS ET 
Sbjct: 181 EQIEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSSDAPAKYLNSNETE 239

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSS-SFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           LFHKG  LYNF  A   +Q   R D + +++   II VEGYMDV++L QAG++N V+ LG
Sbjct: 240 LFHKGNVLYNFARARRAIQGPSRGDAQDDNASGTIIAVEGYMDVIALYQAGIENAVAPLG 299

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE QL LLWK+ P+ VLCFDGD  G+RAA +A +L L HL PG  V F LL  G+DP
Sbjct: 300 TALTENQLELLWKMVPQPVLCFDGDGAGIRAANRAAELALPHLKPGRSVRFALLPDGKDP 359

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D  +R  G+  F+K++ ++ PL +MLW RE     F+TP+ RAELE  LK  +  I D+ 
Sbjct: 360 DDLVRDDGRAPFDKVMSQAKPLSEMLWSREVNTGKFDTPEARAELEARLKQLVAVIADEN 419

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-------- 471
           +R +Y Q IRDRL   FQ      +   R          +    +   +S          
Sbjct: 420 VRRHYQQDIRDRLNAFFQPQFQNRNNGERRGFSGNSRTGRDNAVKAGPKSPSLISDRLAR 479

Query: 472 --VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS--FLFSDFV 527
                      +LRE+ L LT++NHP+++ + Y E+A I YD+ EL++LWS     +  V
Sbjct: 480 SGPVRGHRDNTALRESVLALTIVNHPSLMIDDYDEIAAIDYDSRELKQLWSAVLGAAAAV 539

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
              +   E + +RL   GFG L+K LD+QVR+A LW+AT EA + D R+GY+QALA +KR
Sbjct: 540 AGPHLTREYLTERLEFEGFGPLIKSLDQQVRNARLWTATEEAAMEDAREGYRQALAFHKR 599

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
            + L RQK E+E++IA  T  G+ E    L+    EVH +  ++E+QEA+I+GFG +SGR
Sbjct: 600 AKALRRQKMELEREIALATEAGDGEAIVQLMRAQQEVHFEGVRLENQEAIIDGFGVLSGR 659

Query: 648 L 648
           +
Sbjct: 660 V 660


>gi|13472239|ref|NP_103806.1| DNA primase [Mesorhizobium loti MAFF303099]
 gi|14022984|dbj|BAB49592.1| DNA primase [Mesorhizobium loti MAFF303099]
          Length = 652

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 260/657 (39%), Positives = 373/657 (56%), Gaps = 27/657 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS +IGQ V WDRRKTNA +GD+WACCPFH EK+PSFHC D KG
Sbjct: 9   MRFPPAFLDEIRDRVPISQVIGQRVAWDRRKTNASRGDFWACCPFHGEKSPSFHCEDKKG 68

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+++A +AGVP+PV D + E++EK +  L  +
Sbjct: 69  RYHCFGCSVSGDHFKFLTELDGMSFPEAVEKIADMAGVPMPVRDAQEERREKERASLTDV 128

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L+     +   YL +RG+     + F+LGYAPDSR +L+EHL  KG  +
Sbjct: 129 MEMATAFFQERLQGPEGAKARAYLRDRGLTPATQQSFRLGYAPDSRNALKEHLAAKGVPK 188

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             I   GL+  GD+   SYD FR+R++FPI  SRG++IAFGGR L+     KY+NSP+T 
Sbjct: 189 ADIEACGLVRHGDDIPVSYDWFRDRIMFPIPDSRGKIIAFGGRALAPDALAKYMNSPDTE 248

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYNF  A   L K             +I VEGYMDV++L QAG +NVV+ LGT
Sbjct: 249 LFHKGNVLYNFARARKALAKD----------GTVIAVEGYMDVIALAQAGFENVVAPLGT 298

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW+++P  +LCFDGD  GL+AA++A DL L  +  G    F LL  G+DPD
Sbjct: 299 ALTENQLELLWRMAPEPMLCFDGDKAGLKAAWRAADLALPSVQAGRSARFALLPEGKDPD 358

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G  AF  ++ ++ PLVD+LW RET    F+TP+ RAEL   L+   + I+D+  
Sbjct: 359 DLVKAEGPDAFRAVLADARPLVDLLWMRETAGGVFDTPERRAELGKTLRELASRIRDEST 418

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV-------- 472
           RY+Y Q +R+R +  F        G   +     +     G   +     +         
Sbjct: 419 RYHYQQEMREREKSFFGSQRDARQGRQDWKPGQGKAAAPGGQFAKPGGGRMAITESLGQS 478

Query: 473 --KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
               + S+  S+REA +L+ L+NHP ++ E +  +  +   N+ELQ+L + +        
Sbjct: 479 ALVKRGSEGMSVREATILVALVNHPPLIDENFAHVEFLDLANSELQRLHAAILDAMAHDM 538

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 +   +   G  E+ ++    +R A  W A   A + D R    QAL L +  R 
Sbjct: 539 ANDRHAVVATIERAGCAEIWERAVGLIRRARQWPALETAALDDARDALNQALHLQRSART 598

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
           L ++ ++ E  +       EA+ +      L E+  Q   +++ EA+IEGFG  SGR
Sbjct: 599 LHKELKQAEAAL-------EADPSDENFRHLIEIQAQFQDVQATEALIEGFGVSSGR 648


>gi|239832357|ref|ZP_04680686.1| DNA primase [Ochrobactrum intermedium LMG 3301]
 gi|239824624|gb|EEQ96192.1| DNA primase [Ochrobactrum intermedium LMG 3301]
          Length = 668

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 280/663 (42%), Positives = 395/663 (59%), Gaps = 28/663 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG    +DR+K+N  KGD+WACCPFH EKTPSFHC D KG
Sbjct: 13  MRFPPSFLDEIRDRVPISTLIGTRASFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 72

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P  DP++EK+E  +  L  +
Sbjct: 73  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 132

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L+NA   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 133 MELAAQFFESQLQNAVGAKARAYLRDRGLSTATQQAFRIGYAPESRNALKEFLAGKGVSR 192

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 193 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 252

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A    Q           +  II VEGYMDV++L QAG+  VV+ LGT
Sbjct: 253 LFHKGRVLYNGLRARKACQPQG-----GEPAKSIIAVEGYMDVIALAQAGIHQVVAPLGT 307

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  VLCFDGD  GLRAAY+A+DL L  L PG  + F LL  G+DPD
Sbjct: 308 ALTEEQLDLLWRISPEPVLCFDGDGAGLRAAYRAVDLGLPALQPGKSLRFALLPEGQDPD 367

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G  AF  ++ ++ PLVDM+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 368 DLVKAEGSAAFHAVLRDARPLVDMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 427

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-------------GPSQRLM 467
           R +YSQ +RDR Q  F +    + G G+      R  +                 S  L+
Sbjct: 428 RRHYSQDMRDRAQAFFGQGRQGYQGGGQRNSSFNRRNEGGRGRGGPAGGSGRLAISDSLV 487

Query: 468 QSSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
           +S+LVKG          LRE A++LTL+NHP +++E ++ LA +   +  L+ L   +  
Sbjct: 488 RSTLVKGGRPGAGSHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHEALRSLHLAMLD 547

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                       + + L   G GE ++ L+  V+ A LW+AT  A   D R+  +QAL L
Sbjct: 548 VLAAGHMEDGHAMRRALVNAGHGEQIEMLELVVKGAKLWTATALAAEDDAREALRQALHL 607

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
           ++R R L ++   +E  +       E ++T  L + L ++  QI + ++ EA+I+GFG  
Sbjct: 608 HQRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLS 660

Query: 645 SGR 647
           SGR
Sbjct: 661 SGR 663


>gi|319782037|ref|YP_004141513.1| DNA primase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167925|gb|ADV11463.1| DNA primase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 645

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 256/658 (38%), Positives = 377/658 (57%), Gaps = 28/658 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS++IGQ V WDR+KTNA +GDYWACCPFH EK+PSFHC D KG
Sbjct: 1   MRFPPAFLDEIRDRVPISSVIGQRVAWDRKKTNAPRGDYWACCPFHGEKSPSFHCEDKKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+++A +AGVP+PV D + E++EK +  L  +
Sbjct: 61  RYHCFGCSVSGDHFKFLTELDGMSFPEAVEKIADMAGVPMPVRDAQEERREKERASLTDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L+     +   YL +RG+     + F+LG+APDSR +L+EHL  +G  +
Sbjct: 121 MEMATAFFQERLQGPEGAKARAYLRDRGLTPATQQSFRLGFAPDSRNALKEHLAARGVPK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             I   GL+  GD+   SYD FR+R++FPI  SRG++IAFGGR L      KY+NSP+T 
Sbjct: 181 ADIEACGLVRHGDDIPVSYDWFRDRIMFPIPDSRGKIIAFGGRALQPDALAKYMNSPDTE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYNF  A   L K             +I VEGYMDV++L QAG +NVV+ LGT
Sbjct: 241 LFHKGNVLYNFARARKALAK----------GGTVIAVEGYMDVIALAQAGFENVVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW+++P  +LCFDGD  GL+AA++A D+ L  +  G    F LL  G+DPD
Sbjct: 291 ALTENQLELLWRMAPEPMLCFDGDKAGLKAAWRAADMALPSVQAGRSARFALLPEGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G  AF  ++ E+ PLVD+LW RET    F+TP+ RAELE  L+   + I+D+ L
Sbjct: 351 DLVKAEGPDAFRSVLAEARPLVDLLWMRETAGGVFDTPERRAELEKTLRELTSRIRDESL 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHS-----------GYGRYWKKNARHRDQKGPSQRLMQS 469
           RY+Y Q +R+R+   F    +                     + A+    +      +  
Sbjct: 411 RYHYQQEMRERVLSFFGSQRSGRQDGGRPGQRGQGKAAAPGGQFAKSGGGRIAITESLGQ 470

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           S +  +  +  S+REA +++ L+NHPA++ E +  +  +   N++L++L + +       
Sbjct: 471 SALVKRGGEGMSVREATIIVALVNHPALIDENFAHIEFLDLANSDLRRLHAAILDAMAHD 530

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                + +   +   G  E+ ++    +R    W A   A + D R  + QAL L +  R
Sbjct: 531 MANDRQAVIATIERAGCAEIWERAVGLIRRMRQWPALETAALEDARDAFSQALHLQRSAR 590

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
            L ++ ++ E  +A        + T      L E+  Q   +++ EA+IEGFG  SGR
Sbjct: 591 TLHKELKQAEAALA-------TDPTDENYRHLIEIQAQFQDVQATEALIEGFGVSSGR 641


>gi|39934362|ref|NP_946638.1| DNA primase [Rhodopseudomonas palustris CGA009]
 gi|39648211|emb|CAE26730.1| putative DNA primase [Rhodopseudomonas palustris CGA009]
          Length = 669

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 234/686 (34%), Positives = 355/686 (51%), Gaps = 61/686 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ DL   + +S ++G+ V   +        ++    PF  EKTPSF  ND K 
Sbjct: 1   MRFSPQFLDDLKARLSVSEVVGRRVKLKKAGR-----EWKGLSPFQQEKTPSFFVNDEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++ FS    G    F+    G  F E+V+RLAA+AGV LPV  P   ++E+ +  L  +
Sbjct: 56  AWFDFSSGKNGSIFDFVMLTEGVDFPEAVERLAAMAGVALPVQSPDTARQEQRRKSLYDV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A ++F  +L +    R   YL +R I       F+LGYA + RY+L+EHL + G   
Sbjct: 116 MELAANYFAENLASRAGARARGYLADRAILPGTQVKFRLGYASNERYALKEHLGKHGVPV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +IEAGLL  G +    +D+FR+R++FPI   RG+VIAFGGR L K  + KYLNSPET 
Sbjct: 176 SDMIEAGLLSAGPDIPVPFDKFRDRVMFPITDLRGRVIAFGGRALEKDVAAKYLNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG NLYN   A                   +I+VEGY+DV++L  AG    V+ LGT
Sbjct: 236 LFHKGDNLYNHAPARKAAH----------DGGAVIVVEGYVDVIALVTAGFPATVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL+ LWK++   +LCFDGD  G +AAY+A DL L HL PG  + F LL  G+DPD
Sbjct: 286 ALTEAQLQHLWKMADEPILCFDGDRAGQKAAYRAADLALPHLKPGKSLRFALLPEGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R  G+ A E++I  + PL DMLW RE E   F TP+ RA LE  +    N I+D+ +
Sbjct: 346 DLARAGGRLAVEEVIGAARPLADMLWAREVEGGLFATPERRAALEARINELSNGIQDEVV 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEH--------------------------SGYGRYWKKNA 454
           R YY Q + +RL+  F                                  G GR+  +  
Sbjct: 406 RRYYRQDLAERLRAAFAPPGGYGGGFGGGFRGGGGGDSGRRFAPRDGFPQGGGRFAPRGR 465

Query: 455 R-------HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                    R     +   + SS +        S REA +L++L+NHP +L +  +E+A 
Sbjct: 466 PGQPAPMLGRGPYQIASPDLISSPIMRGQRSAMSRREALILISLLNHPWLLDDHLEEIAA 525

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYF------LPEEIHQRLCERGFGELLKQLDRQVRDAG 561
           + + + E  +L + + + F +  +         E++   L + G  E L++++R +  + 
Sbjct: 526 LEFAHPEAHRLRAAIIAAFAQHHHRGDDPVGQAEKLRADLVKAGLSEQLQRVERAITTSA 585

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
           +W +  +A   DV   +QQ +AL+++   L R+ ++ E  +         + +   +  L
Sbjct: 586 VWGSGPKAAREDVLSTWQQLVALHRQSHSLLRELKDAELALGD-------DGSEANMRWL 638

Query: 622 HEVHIQIHQIESQEAMIEGFGKMSGR 647
           ++V  ++ Q+E  EA+IEGFG+ SGR
Sbjct: 639 NDVKARLAQVEGTEALIEGFGESSGR 664


>gi|192289890|ref|YP_001990495.1| DNA primase [Rhodopseudomonas palustris TIE-1]
 gi|192283639|gb|ACF00020.1| DNA primase [Rhodopseudomonas palustris TIE-1]
          Length = 669

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 235/686 (34%), Positives = 356/686 (51%), Gaps = 61/686 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ DL   + +S ++G+ V   +        ++    PF  EKTPSF  ND K 
Sbjct: 1   MRFSPQFLDDLKARLSVSEVVGRRVKLKKAGR-----EWKGLSPFQQEKTPSFFVNDEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++ FS    G    F+    G  F E+V+RLAA+AGV LPV  P   ++E+ +  L  +
Sbjct: 56  AWFDFSSGKNGSIFDFVMLTEGVDFPEAVERLAAMAGVALPVQSPDSARQEQRRKSLYDV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A ++F  +L +    R   YL +R I       F+LGYA + RY+L+EHL + G   
Sbjct: 116 MELAANYFAENLASRAGARARGYLADRAILPGTQVKFRLGYASNERYALKEHLGKHGVPV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +IEAGLL  G +    +D+FR+R++FPI   RG+VIAFGGR L K  S KYLNSPET 
Sbjct: 176 SDMIEAGLLSAGPDIPVPFDKFRDRVMFPITDLRGRVIAFGGRALEKDVSAKYLNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG NLYN   A                   +I+VEGY+DV++L  AG    V+ LGT
Sbjct: 236 LFHKGDNLYNHAPARKAAH----------DGGAVIVVEGYVDVIALVTAGFPATVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL+ LWK++   +LCFDGD  G +AAY+A DL L HL PG  + F LL  G+DPD
Sbjct: 286 ALTEAQLQHLWKMADEPILCFDGDRAGQKAAYRAADLALPHLKPGKSLRFALLPEGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R  G+ A E++I  + PL DMLW RE E   F TP+ RA LE  +    N I+D+ +
Sbjct: 346 DLARAGGRLAVEEVIGAARPLADMLWAREVEGGLFATPERRAALEARINELSNGIQDEVV 405

Query: 421 RYYYSQAIRDRLQQLFQK----------------------YITEHSGYGRYWKKNARHRD 458
           R YY Q + +RL+  F                              G+ +   + A    
Sbjct: 406 RRYYRQDLAERLRAAFAPPGGYGGGFGGGFRGGGGGDSGRRFAPRDGFPQSGGRFAPRGR 465

Query: 459 QKGPSQRLMQ-----------SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
              P+  L +           SS +        S REA +L++L+NHP +L +  +E+A 
Sbjct: 466 PGQPAPMLGRGPYQIASPDLISSPIMRGQRSAMSRREALILISLLNHPWLLDDHLEEIAA 525

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYF------LPEEIHQRLCERGFGELLKQLDRQVRDAG 561
           + + + E  +L + + + F +  +         E++   L + G  E L++++R +  + 
Sbjct: 526 LEFAHPEAHRLRAAIIAAFAQHHHRGDDPVGQAEKLRADLVKAGLSEQLQRVERAITTSA 585

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
           +W +  +A   DV   +QQ +AL+++   L R+ ++ E  +         + +   +  L
Sbjct: 586 VWGSGPKAAREDVLSTWQQLVALHRQSHSLLRELKDAELALGD-------DGSEANMRWL 638

Query: 622 HEVHIQIHQIESQEAMIEGFGKMSGR 647
           ++V  ++ Q+E  EA+IEGFG+ SGR
Sbjct: 639 NDVKARLAQVEGTEALIEGFGESSGR 664


>gi|260464076|ref|ZP_05812271.1| DNA primase [Mesorhizobium opportunistum WSM2075]
 gi|259030247|gb|EEW31528.1| DNA primase [Mesorhizobium opportunistum WSM2075]
          Length = 648

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 257/656 (39%), Positives = 370/656 (56%), Gaps = 21/656 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS +IGQ V WDR+KTN  +GDYWACCPFH EK+PSFHC D KG
Sbjct: 1   MRFPPAFLDEIRDRVPISQVIGQRVAWDRKKTNTSRGDYWACCPFHGEKSPSFHCEDKKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+++A +AGVP+PV D + E++EK +  L  +
Sbjct: 61  RYHCFGCSVSGDHFKFLTELEGLSFPEAVEKIADMAGVPMPVRDEREEQREKERASLTDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L+     +   YL +RG+       F+LG+APDSR +L+EHL  KG  +
Sbjct: 121 MEMATAFFQERLQGPEGAKARAYLRDRGLTPATQHSFRLGFAPDSRNALKEHLAAKGVPK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             I   GL+  GD+   SYD FR+R++FPI  SRG++IAFGGR L+     KY+NSP+T 
Sbjct: 181 ADIEACGLVRHGDDIPVSYDWFRDRIMFPIPDSRGKIIAFGGRALAADAVAKYMNSPDTE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYNF  A   + K             +I VEGYMDV++L QAG +NVV+ LGT
Sbjct: 241 LFHKGNVLYNFARARQAMAKGALA-----KGGTVIAVEGYMDVIALAQAGFENVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW+++P  +LCFDGD  GL+AA++A DL L  +  G    F LL  G+DPD
Sbjct: 296 ALTENQLELLWRMAPEPMLCFDGDKAGLKAAWRAADLALPSVQAGRSARFALLPEGKDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G  AF  ++ ++ PLVD+LW RET    F+TP+ RAELE  L+   + I+D+ L
Sbjct: 356 DLVKAEGPDAFRAILADARPLVDLLWMRETAGGVFDTPERRAELEKTLRELTSRIRDESL 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG------ 474
           RY+YSQ +R+R+   F            +     +     G   +     +         
Sbjct: 416 RYHYSQEMRERVLSFFGSQRGARQSRQDWKPGQGKAAAPGGQFAKAGSGRMAITESLGQS 475

Query: 475 ---KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
              K  +  S+REA +++ L+NHP ++ E +  +  +   N +LQ+L   +         
Sbjct: 476 ALVKRGEGMSVREATIIVALVNHPPLIDENFAHVEFLDLANADLQRLHGAILDAMAHDMA 535

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                +   +   G  E+ ++    +R A  W A   A + D R    QAL L +  R L
Sbjct: 536 NDRHAVVATIERAGCAEIWERAVGLIRRARQWPALETAALDDARDALNQALHLQRSARTL 595

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
            ++ ++ E  +       EA+ +      L E+  Q   +++ EA+IEGFG  SGR
Sbjct: 596 HKELKQAEAAL-------EADPSDENFRHLIEIQAQFRDVQATEALIEGFGVSSGR 644


>gi|299132000|ref|ZP_07025195.1| DNA primase [Afipia sp. 1NLS2]
 gi|298592137|gb|EFI52337.1| DNA primase [Afipia sp. 1NLS2]
          Length = 665

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 233/685 (34%), Positives = 356/685 (51%), Gaps = 61/685 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ DL   +P+S ++G+ V   R        ++    PFH EKTPSF  ND KG
Sbjct: 1   MRFTPQFLDDLRARLPVSEVVGKRVKLKRAGK-----EWKGLSPFHQEKTPSFTVNDQKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+ FS    G+   F+    G  F+E+V+RLA++AG+ LP V P   + E+ +  L  +
Sbjct: 56  FYHDFSSGKHGNIFDFVMETEGVGFVEAVERLASLAGMALPAVTPDAARHEQRRRTLYDV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A+ FF  +L +    +   YL +R I       F++GYAP  R++L+EHL   G S 
Sbjct: 116 MELASKFFAETLASRTGAKARGYLADRSISPATQLQFRMGYAPGERFALKEHLGSHGVSV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++EAGLLI GD+    YDRFR+R++FPI  +R ++IAFGGR L K    KYLNSPET 
Sbjct: 176 DDMVEAGLLIAGDDIPVPYDRFRDRVMFPITDARNRIIAFGGRALEKDVPAKYLNSPETT 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG NLYN   A                 + +I+ EGY+DV++L  AG    V+ LGT
Sbjct: 236 LFHKGDNLYNQATARQAAH----------DGAPVIVAEGYVDVIALVGAGFPAAVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLWK++   +LCFDGD  G RAA++A DL L HL+PG  + F ++  G+DPD
Sbjct: 286 ALTESQLSLLWKMADEPLLCFDGDGAGQRAAFRAADLALPHLMPGKSLRFAMMPEGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R  G+ A +++   + PL DM+W R TE   F TP+ RA LE  L    N I+D+ +
Sbjct: 346 DLARTGGRAALDEVFAAARPLADMIWARATEGGEFATPERRAALEAKLHELTNGIRDETV 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-------------------- 460
           R YY Q   +RL+++F        G     +   R    +                    
Sbjct: 406 RRYYRQDFAERLRRMFAPEGAAPGGGYGGARGGFRSESPRRFPGRGGFGAGSGGRPGSRA 465

Query: 461 -------------GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                          S +L  S L++G+ S   S REA +L +LINHP +L +  +E+A 
Sbjct: 466 NLSTAALGRGPYQAASPQLANSPLMRGQRSA-LSRREALILQSLINHPWLLHDHLEEIAG 524

Query: 508 IRYDNNELQKLWSFLFSDFVE-----QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
           +   + +  KL + + + F             + I   L +  + E ++++++ +    +
Sbjct: 525 LELAHPDAVKLRAGIIAAFANYGAADDPEAERDRIASWLQKNNYSEQIQRVEKALTTKDV 584

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
           W     A   DV   +QQ +AL+++   L R+ ++ E+ +    ++            L+
Sbjct: 585 WGTQAGAAREDVLSTWQQLVALHRQSHALLRELKDAEQALGHDGSEANN-------VWLN 637

Query: 623 EVHIQIHQIESQEAMIEGFGKMSGR 647
           +V  ++   +  EA+IEGFG+ SGR
Sbjct: 638 DVKARLAAADGTEALIEGFGESSGR 662


>gi|316935467|ref|YP_004110449.1| DNA primase [Rhodopseudomonas palustris DX-1]
 gi|315603181|gb|ADU45716.1| DNA primase [Rhodopseudomonas palustris DX-1]
          Length = 668

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/685 (33%), Positives = 354/685 (51%), Gaps = 60/685 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ DL   + +S ++G+ V   +        ++    PF  EKTPSF  ND K 
Sbjct: 1   MRFSPQFLDDLKARLSVSEVVGRRVKLKKAGR-----EWKGLSPFQQEKTPSFFVNDEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++ FS    G    F+    G  F E+V+RLAA+AGV LPV   +  ++E+ +  L  +
Sbjct: 56  AWFDFSSGKNGSIFDFVMLTEGVDFPEAVERLAAMAGVALPVQTQESARQEQRRKSLYDV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A ++F  +L +    R   YL +R I       F+LGYA + R++L+EHL + G   
Sbjct: 116 MELAANYFADNLASRAGARARGYLADRAILPGTQVKFRLGYASNERFALKEHLGKHGVPV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +IEAGLL  G +    +D+FR+R++FPI   RG+VIAFGGR L K  + KYLNSPET 
Sbjct: 176 ADMIEAGLLSAGPDIPVPFDKFRDRVMFPILDLRGRVIAFGGRALEKDVAAKYLNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG NLYN   A                   +I+VEGY+DV++L   G    V+ LGT
Sbjct: 236 LFHKGDNLYNHAPARKAAH----------EGGSVIVVEGYVDVIALVTVGFPATVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL+ LWK++   +LCFDGD  G +AAY+A DL L HL PG  + F LL  G+DPD
Sbjct: 286 ALTEAQLQHLWKMADEPILCFDGDRAGQKAAYRAADLALPHLKPGKSLRFALLPEGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R  G+ A +++I  + PL DMLW RE E   F TP+ RA LE  +    N I+D+ +
Sbjct: 346 DLARAGGRLAVDEVISAARPLADMLWAREAEGGMFATPERRAALEARINELSNGIRDEIV 405

Query: 421 RYYYSQAIRDRLQQLFQK---------------------YITEHSGYGRYWKKNARHRDQ 459
           R +Y Q + DRL+  F                             G+ +   + A     
Sbjct: 406 RRHYRQDLTDRLRAAFAPAGGFGGFGGGFRGGGGGDSGRRFAPRGGFPQGGGRFAPRGRP 465

Query: 460 KGPSQRLMQ-----------SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
             P+  L +           SS +        S REA +L++L+NHP +L +  +E+A +
Sbjct: 466 GQPAPTLGRGPYQIASPDLISSPIMRGQRSAMSRREALILISLLNHPWLLDDHLEEIAAL 525

Query: 509 RYDNNELQKLWSFLFSDFVEQKYF------LPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
            + + E  +L + + + F +  +         E++   L + G  E L++++R +  + +
Sbjct: 526 EFAHPEAHRLRAAIIAAFAQHHHRGDDPAGQAEKLRADLVKAGLSEQLQRVERAITTSAV 585

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
           W+    A   DV   +QQ +AL+++   L R+ ++ E  +         + +   +  L+
Sbjct: 586 WAVGPAAAREDVLSTWQQLVALHRQSHSLLRELKDAELALGD-------DGSEANMQWLN 638

Query: 623 EVHIQIHQIESQEAMIEGFGKMSGR 647
           +V  ++ Q+E  EA+IEGFG+ SGR
Sbjct: 639 DVKARLAQVEGTEALIEGFGESSGR 663


>gi|91978434|ref|YP_571093.1| DNA primase [Rhodopseudomonas palustris BisB5]
 gi|91684890|gb|ABE41192.1| DNA primase [Rhodopseudomonas palustris BisB5]
          Length = 685

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 230/693 (33%), Positives = 360/693 (51%), Gaps = 59/693 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ +L   + +S+++G+ V   +        ++    PF  EKTPSF  ND K 
Sbjct: 1   MRFTPQFLDELKARLLVSDVVGRRVKLKKAGR-----EWKGLSPFQQEKTPSFFVNDEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++ FS    G    F+    G  F E+V+RLAA+AG+ LP   P   ++E+ +  L  +
Sbjct: 56  AWFDFSSGKNGSIFDFIMQTDGVDFPEAVERLAAMAGLALPAATPDAARQEQRRRSLYDV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  +F  +L +    R   YL +RGI       F++G+A + RY+L+EHL   G   
Sbjct: 116 MELAAAYFADNLASRAGARARGYLADRGILPSTQVKFRIGFAANERYALKEHLGSHGVPV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +IEAGLL  GD+    +D+FR+R++FPI   RG+VIAFGGR L K  + KYLNSPET 
Sbjct: 176 GDMIEAGLLSAGDDIPVPFDKFRDRVMFPITDIRGRVIAFGGRALEKDVAAKYLNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG NLYN   A      +       NS++ +I+VEGY+DV+++  AG    V+ LGT
Sbjct: 236 LFHKGDNLYNLATARKAAHDAA-GKSTPNSAAAVIVVEGYIDVIAMVTAGFAATVAPLGT 294

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL+LLWK++   +LCFDGD  G +AA++A DL L HL PG  + F LL  G+DPD
Sbjct: 295 ALTENQLQLLWKMADEPILCFDGDRAGQKAAFRAADLALPHLKPGKSLRFALLPEGQDPD 354

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R  G+ A E++I  + PL D+LW RE E  SF TP+ RA LE  +      I+D+ +
Sbjct: 355 DLARAGGRLAIEEVIGAARPLADLLWSREAEGGSFATPERRAALEARINELSGSIRDEVV 414

Query: 421 RYYYSQAIRDRLQQLFQKYITEH--------------------------------SGYGR 448
           R YY Q   +RL+  F                                        G GR
Sbjct: 415 RRYYRQDWAERLRAAFAPQGGFGGGFGGGFGGGFRGGAGRGGDSRRGFPPRGGFPQGGGR 474

Query: 449 YWKKNARHRDQKGP--------SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
           +  +         P        +   + SS +        S REA +L +L++HP +L +
Sbjct: 475 FAPRGQPSGLSSPPFGRGAYQVASPDLASSPIMRGQRSAMSRREALILQSLLHHPWLLHD 534

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYF------LPEEIHQRLCERGFGELLKQLD 554
             +E+A + + + E  +L + + + F +  +         E++   L + G  E L++++
Sbjct: 535 HLEEIAALEFAHPEAHRLRAAIIAAFAQDHHHGDDPAGHAEKLRADLVKAGLSEQLQRVE 594

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           R +  + +W A + A   DV   +QQ +AL+++   L R+ ++ E  + +  ++      
Sbjct: 595 RAITTSAVWGAGSGAAREDVLSTWQQLVALHRQSHSLLRELKDAELALGEDGSEANN--- 651

Query: 615 AILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
               + L++V  ++ ++E  EA+IEGFG+ SGR
Sbjct: 652 ----AWLNDVKARLSEVEGTEALIEGFGESSGR 680


>gi|315122784|ref|YP_004063273.1| DNA primase [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496186|gb|ADR52785.1| DNA primase [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 650

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 488/650 (75%), Positives = 566/650 (87%), Gaps = 2/650 (0%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+YP DFI DLLI  PIS+LIGQ+V+WDR+KTNAVKGDYW+CCPFH+EK PSFHC+D KG
Sbjct: 1   MHYPHDFIDDLLIRTPISHLIGQHVNWDRKKTNAVKGDYWSCCPFHNEKNPSFHCDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            YYCFSCH  G+HL+FLS LLGCSFIESVQ+LA IAGV LP  DP ++KK+K QT LI+L
Sbjct: 61  VYYCFSCHATGNHLTFLSTLLGCSFIESVQKLAVIAGVSLPTFDPILDKKQKKQTSLIQL 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           I++A DFFH SLKN  +KRL YYLD+RGI+SH+IE FKLGYAPDSR+SL E+L  KGF++
Sbjct: 121 IDIAADFFHQSLKNNDNKRLRYYLDKRGINSHSIETFKLGYAPDSRHSLEEYLHTKGFTQ 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           EKIIEAGLLI GDN  T YDRFR+RLIFPI SSRGQ IAFGGR+LSKG+++KYLNSPETI
Sbjct: 181 EKIIEAGLLIHGDNITTPYDRFRDRLIFPILSSRGQGIAFGGRSLSKGDNIKYLNSPETI 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKGKNLYNFFGALNY Q+SIR+DV++ SSSFI+LVEGYMDV+SL QAG+QNVVSSLGT
Sbjct: 241 LFHKGKNLYNFFGALNYRQRSIRQDVQKQSSSFIVLVEGYMDVVSLHQAGIQNVVSSLGT 300

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LTE QLRLLWKLSPR+VLCFDGDDPGLRAAYKA+DLVL HL  GN VNF+LLS GEDPD
Sbjct: 301 SLTEDQLRLLWKLSPRVVLCFDGDDPGLRAAYKAVDLVLSHLSIGNSVNFILLSEGEDPD 360

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           SF++ YGK AFEKLI+ES+PLVD+LWKRETE  SF TPD RAELE  LKNC++ I DQKL
Sbjct: 361 SFVQRYGKIAFEKLILESVPLVDVLWKRETEYHSFETPDARAELEGRLKNCLDRITDQKL 420

Query: 421 RYYYSQAIRDRLQQLFQKYITEHS--GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
           RYYY ++I++RL  LFQ     HS  G+G+YW K  ++RD+ GPSQRLMQSSLVKGK SK
Sbjct: 421 RYYYFKSIQERLHHLFQTNPRPHSSYGHGQYWGKKVKYRDKAGPSQRLMQSSLVKGKNSK 480

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           KPSLREAALLLTLINHP ILQEQ  EL DI YDN+ELQK+WSFLFS+FV QK F  EEI+
Sbjct: 481 KPSLREAALLLTLINHPKILQEQCYELTDISYDNSELQKMWSFLFSEFVVQKDFSREEIN 540

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           Q+LC RGFGELL++LD+QVRDAGLWSAT EA+IVDVRQGYQQA+ALYKRFRLLSRQK ++
Sbjct: 541 QKLCTRGFGELLQRLDKQVRDAGLWSATAEADIVDVRQGYQQAVALYKRFRLLSRQKADL 600

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           EKQIAQ+T +GE +KT  LISIL+++HIQI+ IE QEA+IEGFGKMSGR+
Sbjct: 601 EKQIAQMTEQGEEKKTTTLISILNDIHIQINTIECQEAIIEGFGKMSGRV 650


>gi|298292325|ref|YP_003694264.1| DNA primase [Starkeya novella DSM 506]
 gi|296928836|gb|ADH89645.1| DNA primase [Starkeya novella DSM 506]
          Length = 645

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 240/662 (36%), Positives = 361/662 (54%), Gaps = 37/662 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +P+S ++G+ V   ++       ++    PF+ EKTPSF+ ND KG
Sbjct: 1   MRFPPSFLDEIRARLPVSEVVGKRVQLKKQGR-----EWRGLSPFNPEKTPSFYVNDQKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CFS    GD   FL  + G  F E+V+RLA++AG+P+PV   + E++E  +  L  +
Sbjct: 56  FYHCFSSGKHGDQFDFLMEVEGLPFPEAVERLASMAGLPMPVQSREEEQRESRRKTLHEV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  ++   L++    +   YL +RG+       F+LGY+   R++L+E L  KG   
Sbjct: 116 MELAAKYYEAVLQSRAGAKGRGYLADRGLGPSTQGRFRLGYSLPDRFALKEALGGKGIPV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E ++EAGLLI  ++ A  YDRFR+R++FPI   RG+V+AFGGR L K    KYLNSPET 
Sbjct: 176 EDMVEAGLLITAEDVAIPYDRFRDRVMFPITDLRGRVVAFGGRALEKDVPAKYLNSPETS 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN F A               + + +I VEGY+DV++L +AG    V+ LGT
Sbjct: 236 LFHKGSLLYNGFSARAAAH----------NGAPVIAVEGYVDVIALVEAGFSGAVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLWK++   VL FDGD  G RAAY+AIDL L HL PG  ++F  L  G+DPD
Sbjct: 286 ALTEEQLALLWKMAAEPVLLFDGDKAGRRAAYRAIDLALPHLKPGVSLSFGTLPDGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G+ A + ++ ++ PL D+LW RE E+ S +TP+ RA LE  +   +  I D+ +
Sbjct: 346 DLVRAGGREAVDAVLAQARPLADVLWSREMESASVDTPERRAALEARIGEVVRVIADETV 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSG---------------YGRYWKKNARHRDQKGPSQR 465
           R +Y   + DR ++LF     +  G                GR  ++    R   G +  
Sbjct: 406 RKHYRSELMDRFRRLFTPVAVQGEGSRRGSGDYQGRFDRSSGRGGRRPNDRRPVSGVAGE 465

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
            M+ S +    + +    EA LL   INHP +L +  +ELAD+ + N E  +L   L   
Sbjct: 466 GMRRSALVRGAAAEIPRNEALLLFAAINHPWLLDQCAEELADLPFQNKEAAELRRALLDA 525

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            ++      E +  RL  +G   L+ +L R       W A  +A   DV   + Q L L+
Sbjct: 526 HMDGDDADHERLAARLESQGHAPLVARLARAAIARHDWPAFADAARSDVELWWHQRLVLH 585

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +R   LS+  +E EK++A+       E T +  +   +V  Q+  ++  EA++EGFG  S
Sbjct: 586 RRGHALSKDLKEAEKRLAE-------EPTDMNWARFLDVQRQLAALDGTEALVEGFGAAS 638

Query: 646 GR 647
           GR
Sbjct: 639 GR 640


>gi|154245187|ref|YP_001416145.1| DNA primase [Xanthobacter autotrophicus Py2]
 gi|154159272|gb|ABS66488.1| DNA primase [Xanthobacter autotrophicus Py2]
          Length = 639

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 225/657 (34%), Positives = 342/657 (52%), Gaps = 34/657 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +P+S ++G+ V   ++       ++    PF+ EKTPSF  ND KG
Sbjct: 1   MRFPPAFLDEIRARLPVSEVVGRRVKLKKQGR-----EFAGLSPFNAEKTPSFFVNDQKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CFS    GD   FL    G  F E+V+RLAA+AG+PLP   P+   KE+ +  L  +
Sbjct: 56  FYHCFSSGKHGDVFDFLMETEGVPFGEAVERLAAMAGLPLPQETPEAAAKERRRHTLFEV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + +A   F  +L++    +   YL +R + +   + F LGYA   R+ L+E L + G   
Sbjct: 116 MSLAARHFEETLQSRLGAKARGYLADRELGAATQKRFGLGYAAGERFRLKEALGKAGVPV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E ++EAGLLI GD+    YDRFR+R++FPI   +G+++ FGGR L K    KYLNSPET+
Sbjct: 176 EDMVEAGLLIAGDDIPVPYDRFRDRVMFPITDLKGRIVGFGGRALEKDVPAKYLNSPETV 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN   A               S + +I VEGY+DV+++ +AG    V+ LGT
Sbjct: 236 LFHKGSLLYNGAAARTAA----------QSGARVIAVEGYVDVIAMAEAGFGATVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL+LLW++S   +L FDGD  G RAA++AIDL L HL  G  + F  L  G+DPD
Sbjct: 286 ALTEEQLQLLWRMSEEPLLLFDGDKAGRRAAHRAIDLALPHLKAGRSLAFATLPEGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G+ A E ++ ++ PLV  LW RE+E  + +TP+ RA LE  L   ++ I D+ +
Sbjct: 346 DLIRRSGRDAMEAVLAQARPLVAELWARESEAATLDTPERRAGLEARLGEVVSAIADETV 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R +Y Q +  R   L        +   R   K+            L    + +G    + 
Sbjct: 406 RKHYRQELLGRFNALVSPQDRAPARARREGWKDGWQPSGGRRGTPLPPPLVPRGTEIARS 465

Query: 481 SLR----------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
           +L           EA LL  LINH  +L E  +++A +   N E  +L   L    +E  
Sbjct: 466 ALVRGPMAALPRNEALLLFCLINHTFLLDEADEDVASLPLANPEADRLRRILIEAHLEG- 524

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               + + +RL       L +++         W A  +    DVR  + Q  AL+++   
Sbjct: 525 -ADADALTERLGRADIDALTRRVKALANPRHDWPAYPDTAQNDVRLWWHQRTALHRKAHA 583

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
           LSR+ +E E+ + +       + +    + L +V  ++  ++  EA++EGFG  SGR
Sbjct: 584 LSRELKEAERSLGE-------DPSEANFAWLRDVRERLSALDGTEALVEGFGASSGR 633


>gi|86751239|ref|YP_487735.1| DNA primase [Rhodopseudomonas palustris HaA2]
 gi|86574267|gb|ABD08824.1| DNA primase [Rhodopseudomonas palustris HaA2]
          Length = 683

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 230/691 (33%), Positives = 359/691 (51%), Gaps = 57/691 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ +L   + +S ++G+ V   +        ++    PF  EKTPSF  ND K 
Sbjct: 1   MRFTPQFLDELKARLLVSEVVGRRVKLKKAGR-----EWKGLSPFQQEKTPSFFVNDEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++ FS    G    F+    G  F E+V+RLAA+AG+ LP   P   ++E+ +  L  +
Sbjct: 56  AWFDFSSGKNGSIFDFIMQTDGVDFPEAVERLAAMAGLALPAATPDAARQEQRRRSLYDV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  +F  +L +    R   YL +RGI       F++GYA   R++L+EHL + G S 
Sbjct: 116 MEMAAVYFSENLASRAGARARGYLADRGILPSTQVKFRIGYASPDRFALKEHLGKHGVSV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++EAGLL  GD+    +D+FR+R++FPI   RG+VIAFGGR L K  + KYLNSPET 
Sbjct: 176 DDMVEAGLLSAGDDIPVPFDKFRDRVMFPITDIRGRVIAFGGRALEKDVAAKYLNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG NLYN   A      +  K     ++S +I+VEGY+DV+++  AG    V+ LGT
Sbjct: 236 LFHKGDNLYNLATARKAAHDAAGKSTPTGAAS-VIVVEGYIDVIAMVTAGFAATVAPLGT 294

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL+LLWK++   +LCFDGD  G +AAY+A DL L HL PG  + F LL  G+DPD
Sbjct: 295 ALTENQLQLLWKMADEPILCFDGDRAGQKAAYRAADLALPHLKPGKSLRFALLPEGQDPD 354

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R  G+ A E++I  + PL D+LW RE E  SF TP+ RA LE  +    N I+D+ +
Sbjct: 355 DLARAGGRLAIEEVIGAARPLADLLWSREAEGGSFATPERRAALEARINELANGIRDEVV 414

Query: 421 RYYYSQAIRDRLQQLFQKYITEHS-----------------GYGRYWKKNA--------- 454
           R YY +   +RL+  F                            R+  + +         
Sbjct: 415 RRYYRKDWAERLRAAFAPQGGFGGGFGGGFRAGGGARGGADSGRRFQPRGSFPQGGGRYA 474

Query: 455 ------------RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                       + R     +   + SS +        S REA +L +L+NHP +L +  
Sbjct: 475 PFGRQTGLSSPPQGRGPYQVASPDLASSPIMRGQRSALSRREALILQSLLNHPWLLHDHL 534

Query: 503 QELADIRYDNNELQKLWSFLFS------DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           +E+A + + + E  +L + + +         +      E++   L + G  E L++L+R 
Sbjct: 535 EEVAALEFAHPEAHRLRAAIIAAFAADHHHGDDPAGQSEKLRADLAKAGLSEQLQRLERA 594

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           +    +W A  +A   DV   +QQ +AL+++   L R+ ++ E  + +       + +  
Sbjct: 595 ITTHAVWGAGPDAAPEDVLSTWQQLVALHRQSHSLLRELKDAELALGE-------DGSEA 647

Query: 617 LISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
            ++ L +V  ++ ++E  EA+IEGFG+ SGR
Sbjct: 648 NVAWLRDVKARLSEVEGTEALIEGFGQSSGR 678


>gi|209884281|ref|YP_002288138.1| DNA primase [Oligotropha carboxidovorans OM5]
 gi|209872477|gb|ACI92273.1| DNA primase [Oligotropha carboxidovorans OM5]
          Length = 665

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 232/685 (33%), Positives = 351/685 (51%), Gaps = 61/685 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F++DL   +P+S ++G+ V   R        ++    PFH EKTPSF  ND KG
Sbjct: 1   MRFTPQFLEDLRARLPVSEVVGKRVKLKRAGK-----EWKGLSPFHQEKTPSFTVNDQKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+ FS    G+   F+    G  F+E+V+R+AA+AGV LP V P   + E+ +  L  +
Sbjct: 56  FYHDFSSGKHGNIFDFIMETEGVGFVEAVERIAAMAGVALPAVTPDAARHEQRRKTLYEV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF  +L +    R   YL +RGI       F++GYAP  R++L+EHL   G S 
Sbjct: 116 MELAAKFFADTLTSRSGARARGYLADRGISGATQLQFRMGYAPPDRFALKEHLGGLGVSV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + +IEA LL  GD+    YDRFR+R++FPI   R ++IAFGGR + K    KYLNS + +
Sbjct: 176 DDMIEARLLSAGDDIPVPYDRFRDRVMFPITDQRNRIIAFGGRAMEKDAPAKYLNSADGV 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG NLYN   A   ++            + +I+ EGY+DV++L  AG    V+ LGT
Sbjct: 236 LFHKGDNLYNQAMARQAVR----------DGAPVIVAEGYVDVIALVGAGFPGAVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW+++   VLCFDGD  G RAA +A  L L HL PG  + F ++  G+DPD
Sbjct: 286 ALTENQLALLWRMADEPVLCFDGDGAGQRAALRAASLALPHLKPGKSLRFAMMPEGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R  G+ A +++   + PL D++W   TE   F TP+ RA LE  L + +  I D+ +
Sbjct: 346 DLARSGGRAALDEVFAAARPLADVVWAMATEGVDFATPERRAALEARLGDLMREIGDEVV 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR------------------------- 455
           R YY Q   +RL+++F    T   G     +   R                         
Sbjct: 406 RRYYRQDFAERLRRMFAPETTGTGGGYGGPRNGFRNESARRFPARNGPGSAMRPGGRGGL 465

Query: 456 --------HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                       +  S +L  S L++G+ S   S REA +L +L+NHP +LQ+  +E A 
Sbjct: 466 STAAFALGRGPYQAMSPQLANSPLIRGQRST-LSRREALILQSLLNHPWLLQDHLEEAAK 524

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEE-----IHQRLCERGFGELLKQLDRQVRDAGL 562
           +   + +  KL   + + F +       E     I   L   GF + ++ ++  +    +
Sbjct: 525 LELAHPDSVKLREGIIAAFAQYGATDDSEAERSRIADWLARNGFSKQIQMVESTLTTRNV 584

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
           W A   A   DV   + Q +AL+++   L R+ ++ E+ +         E T   ++ L 
Sbjct: 585 WGAEAGAAREDVLATWHQLVALHRQSHALLRELKDAEQALG-------HENTEAHVAWLQ 637

Query: 623 EVHIQIHQIESQEAMIEGFGKMSGR 647
           +V  ++   +  EA+IEGFG+ SGR
Sbjct: 638 DVKARLAAADGLEALIEGFGESSGR 662


>gi|114704975|ref|ZP_01437883.1| DNA primase [Fulvimarina pelagi HTCC2506]
 gi|114539760|gb|EAU42880.1| DNA primase [Fulvimarina pelagi HTCC2506]
          Length = 650

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 253/662 (38%), Positives = 382/662 (57%), Gaps = 32/662 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ D+   +PIS++IGQ V WDRRK+   KGD+WACCPFH EK+PSFHC D KG
Sbjct: 1   MRFPPSFLDDIRARVPISDVIGQRVTWDRRKSRPAKGDHWACCPFHGEKSPSFHCEDDKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF ++V+RLA +AG+ +P  DP+ E++E+ +  ++  
Sbjct: 61  RYHCFGCGVSGDHFRFLTELDGMSFPDAVERLAGLAGLQMPARDPEAERREEKRGTILDA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + +A++FF   L++    +   YL +RG+     + F LG+AP+ R  L+EHL  KG  +
Sbjct: 121 LRLASEFFRERLQDNEGAKARGYLRDRGLTPATQKRFGLGFAPEGRNRLKEHLAGKGVGK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            +I  AGL++ GD+   S+DRFR+R++FPI     + +AFGGR +S     KYLNSPET 
Sbjct: 181 AEIEAAGLVVWGDDIPVSFDRFRDRIMFPILDPSERCVAFGGRAMSPEARAKYLNSPETD 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG  LYN   A    +          S+   I+VEGYMDV++L QAG  N V+ LGT
Sbjct: 241 VFHKGTMLYNLAAARRAAK----------STGTFIVVEGYMDVIALAQAGFDNAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+ LLW+ +   VLCFDGD  GL+AA++A +L L  L PG  + F LL  G+DPD
Sbjct: 291 ALTESQIELLWRNAGEPVLCFDGDGAGLKAAHRAAELALPMLKPGRSLRFALLPDGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G  AF +++ ++ PL DM+W RET   +F+TP+ RA+LE  L      I D+ +
Sbjct: 351 DLVKGRGPDAFHEVLAQARPLSDMVWSRETAGSTFDTPEARADLEARLNQLTRQIGDESV 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYG---------RYWKKNARHRDQKGP------SQR 465
           R +Y   +R RL   F    ++    G         +  ++N   R  + P      S R
Sbjct: 411 RRHYQNDMRQRLSAFFGNASSQPRYGGRGERGRYGDQQGRRNTGSRQGQAPGLRPAISDR 470

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           L +SSL++    + PSLRE A+++  +NHP ++ E +   AD+  +  +L +L + +   
Sbjct: 471 LARSSLLRASGGQAPSLREIAIVVGFVNHPILMHEAFDYFADLEIEAPDLARLRASVLDI 530

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
           + E      E I   L   G   + +  +++ R+  LW    +A   D R+  +QAL L 
Sbjct: 531 YAESAPDSREVIVAGLERAGTDTIFETYEKKAREVRLWPVLADAAADDAREALRQALNLQ 590

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
            RF+ L+R+  + E+ + +       E T      +  V  +I ++E+ EA+I+GFG +S
Sbjct: 591 HRFKALTRELRQAERLLGE-------EPTEEAYEHMRAVKAEIERLETVEALIDGFGILS 643

Query: 646 GR 647
           GR
Sbjct: 644 GR 645


>gi|296445788|ref|ZP_06887741.1| DNA primase [Methylosinus trichosporium OB3b]
 gi|296256768|gb|EFH03842.1| DNA primase [Methylosinus trichosporium OB3b]
          Length = 643

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 231/662 (34%), Positives = 339/662 (51%), Gaps = 39/662 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP  F+ ++   +P+S ++ Q V   ++       ++    PF+ EKTPSF+ ND KG
Sbjct: 1   MRYPPSFLDEIRARVPVSAVVSQKVKLKKQGR-----EWRGLSPFNAEKTPSFYVNDQKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+ FS    GD  +FL    G +F E+V++LA +AG+P+PV   +  + E  +  L  +
Sbjct: 56  FYHDFSSGKNGDGFTFLMETEGLTFPEAVEKLAGMAGLPMPVETTEAREAEAKRASLGDV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  +F   L+         YL  R I       F+LG+AP+ R+ LR+HL  KG S 
Sbjct: 116 LEWAALYFEAQLRGPAGGAARAYLAGRSIGETDRARFRLGFAPNERHGLRDHLAGKGASV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E +IEAGLL+ G++    YDRFR+R++FPI    G+VIAFGGR + K    KY+NSPET 
Sbjct: 176 EAMIEAGLLVHGEDIVVPYDRFRDRIMFPILDRAGRVIAFGGRAMQKDAQAKYMNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN   A                +  +I VEGY+DV+++  AG    V+ LGT
Sbjct: 236 LFHKGATLYNHHNARKAAH----------EAGTVIAVEGYVDVIAMTAAGFAQTVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q  LLW ++   +LCFDGD  G +AA +AID  L  L PG    F LL  G+DPD
Sbjct: 286 ALTAEQCNLLWTMAEEPILCFDGDKAGRKAADRAIDTALPLLGPGRSFRFALLPDGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R  G  A  + I  + PLVD+LW RETE    +TP+ RA LE        +I D+ L
Sbjct: 346 ELFRAGGPAAIAEAIGAARPLVDLLWARETEGARLDTPERRAALERRFAELARNIADEAL 405

Query: 421 RYYYSQAIRDRLQQLFQKYIT---------------EHSGYGRYWKKNARHRDQKGPSQR 465
           R +YSQ + DR   LF +                            +    R        
Sbjct: 406 RRHYSQELIDRCATLFGRSRNYPPRREQRSGGGGGGRGPMRRFGGNEQPSLRGPVTIGAS 465

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           L +S L +G+     + REA +LL L+NHP +L E+ +E+A + + + E ++L + LF  
Sbjct: 466 LARSPLFRGE-GAAIAPREALILLILLNHPQLLLERLEEIAALDFASAEARELLAALFRA 524

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
             +      E + + +   G      +L      A LW+    A   D  +  +QAL L 
Sbjct: 525 -ADDGAPDEESVAREIAAAGLEAFCARLAGMGAHASLWNVRRGAATTDAAESLRQALVLQ 583

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
            R R L ++  +IE+++A   +  +        + L ++  Q++ IE  EAM++GFG +S
Sbjct: 584 HRVRALHKELRKIEQRLADAPSDHD-------FARLSDIQAQLNAIEGTEAMLDGFGSLS 636

Query: 646 GR 647
           GR
Sbjct: 637 GR 638


>gi|323137009|ref|ZP_08072089.1| DNA primase [Methylocystis sp. ATCC 49242]
 gi|322397770|gb|EFY00292.1| DNA primase [Methylocystis sp. ATCC 49242]
          Length = 641

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 231/659 (35%), Positives = 355/659 (53%), Gaps = 35/659 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ ++   +P+S ++ + V   R+       ++    PF+ EKTPSF+ ND KG
Sbjct: 1   MRFSPSFLDEIRARVPVSEVVRRKVKLTRQGR-----EWRGLSPFNAEKTPSFYVNDQKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F++ FS    GD  +FL    G SF E+V+RLA +AG+P+PV  P+  ++++ +  L   
Sbjct: 56  FFHDFSSGKHGDGFTFLMETEGLSFPEAVERLAGLAGLPMPVETPEQREQDERRATLGDA 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF   L     +    YLD R I + +   F+LG+AP  R++LR+HL  +G + 
Sbjct: 116 LEWAAGFFEKQLAGPAGREARAYLDRRQISARSRAQFRLGFAPAERHALRDHLAARGATV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E +IEAGLLI G++ A  YDRFRNR++FPI    G+VIAFGGR +      KYLNSPET 
Sbjct: 176 ETMIEAGLLIHGEDIAVPYDRFRNRVMFPICDRSGRVIAFGGRAMEADAQAKYLNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN   A                S  ++ VEGY+DV++L  AG  +VV+ LGT
Sbjct: 236 LFHKGATLYNLHNARKAAH----------ESGTVVAVEGYIDVIALTAAGFPHVVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q  LLW+++   +LCFDGD  GL+AA++A+D  L  + PG  + FVLL  G+DPD
Sbjct: 286 ALTPEQCGLLWRMAEEPILCFDGDKAGLKAAFRAVDTALPLVGPGRTLRFVLLPDGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G +A  + + + LPLVD+LW RETE  + +TP+ RA LE  L+     I D+ L
Sbjct: 346 ELLRAGGPSAVAQALGQPLPLVDLLWMRETEGVALDTPERRAGLERRLREVAGQITDETL 405

Query: 421 RYYYSQAIRDRLQQLFQK------------YITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           R +Y Q + +RL +LF +               + S   R W              + + 
Sbjct: 406 RRHYQQELSERLDRLFGRGAARFTGRRPDASPRDFSARRRQWGGRGEPAGGSVRIGQSLA 465

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           +S +   +    + RE  +LL L+NHP +L  Q  ++A + + + E   +   L   + E
Sbjct: 466 NSPLFRGVKATITPREGLILLILMNHPEVLAAQVDDIAALDFASPEAAAMRDALV-HWAE 524

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                  E+ + L E GF  L  ++   V  A +WS   +A   D  +  +QAL L++R 
Sbjct: 525 AGGGDRLELRRSLEESGFANLAARIAGMVAHATIWSVRPDAAPADAAESLRQALVLHRRS 584

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
             L+++   +E ++A+     ++       + L ++  Q+  ++  EA +EGFG +SGR
Sbjct: 585 CALNKELRAVEARLAENPNDQDS-------ARLRDIQTQLTALDGAEAALEGFGTLSGR 636


>gi|115523079|ref|YP_779990.1| DNA primase [Rhodopseudomonas palustris BisA53]
 gi|115517026|gb|ABJ05010.1| DNA primase [Rhodopseudomonas palustris BisA53]
          Length = 688

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/688 (33%), Positives = 351/688 (51%), Gaps = 63/688 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ DL   + +S+++G+ V   +        ++    PF  EKTPSF  ND K 
Sbjct: 20  MRFTPQFLDDLKARLMVSDVVGRRVKLKKSGR-----EWKGLSPFQQEKTPSFFVNDEKQ 74

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++ FS    G    F+    G  F E+V+RLAA+AG+ LP   P   ++E+ +  L  +
Sbjct: 75  AWFDFSSGKNGSIFDFVMQTEGVDFPEAVERLAALAGMALPQATPDAARQERHRKSLYEV 134

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF  +L      R   YL +R I       F+LG+AP  R++L+EHL + G   
Sbjct: 135 MELAAAFFTETLAARGGARARGYLADRAIAPATQVKFRLGFAPADRFALKEHLGKHGIPV 194

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             ++EAGLLI GD+    YDRFR+R++FPI   RG+VIAFGGR + K    KYLNSPET 
Sbjct: 195 SDMVEAGLLIAGDDIPVPYDRFRDRVMFPITDIRGRVIAFGGRAMEKDVPAKYLNSPETP 254

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG NLYN   A                 + +++VEGY+DV+++   G    V+ LGT
Sbjct: 255 LFHKGDNLYNLASARGAAH----------QGASLVVVEGYVDVIAMSAVGYAATVAPLGT 304

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL+LLWK++   +LCFDGD  G +AA++A DL L +L PG  + F LL  G+DPD
Sbjct: 305 ALTENQLQLLWKMADEPILCFDGDKAGQKAAWRAADLALPYLAPGKSLRFALLPEGQDPD 364

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              +  G+ A +++I  + PL D+LW RE    SF TP+ RA LE  +    N I+D+ +
Sbjct: 365 DLAKLGGRAAVDEVIGAARPLADVLWSREHGAGSFATPERRAALEARINELTNGIRDEVV 424

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR----------------------- 457
           R YY Q + +RL+Q F              ++                            
Sbjct: 425 RRYYRQDLGERLRQAFAPQGGFGGNRNFQGRRGDSPGGFVPRGPFQPGGGRPQPRGGRNA 484

Query: 458 -----------DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
                        +  S  L  S +++G+ S   S REA +L TLINHP +L ++ +++A
Sbjct: 485 GAMTGIALSRLPYQVASPELAASPIMRGQRSA-ISRREALILQTLINHPWLLHDRLEQVA 543

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEE------IHQRLCERGFGELLKQLDRQVRDA 560
            +   + E  +L + + + F    +   +       +   L   G  E L++++R +   
Sbjct: 544 ALELAHPEAHRLRAAIIAAFANDHHHADDAAEQSGRLRADLEAMGLTEQLQRVERSITTK 603

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +W A   A   DV   +QQ +AL++++  L R+ ++ E  +         E +    + 
Sbjct: 604 DVWGAQPGAAAEDVLSTWQQLVALHRQWHSLLRELKDAELALGD-------EPSDANFAW 656

Query: 621 LHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           L +V  ++ +++  EA+IEGFG  SGRL
Sbjct: 657 LRDVKARLAEVDGIEALIEGFGASSGRL 684


>gi|182680200|ref|YP_001834346.1| DNA primase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182636083|gb|ACB96857.1| DNA primase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 665

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 235/682 (34%), Positives = 349/682 (51%), Gaps = 57/682 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F++++   +P+S ++ + V   +        ++    PF+ E+TPSF  ND KG
Sbjct: 1   MRFPTSFLEEIKHRLPMSEVVRRRVKLQKAGR-----EWKGLSPFNQERTPSFTVNDQKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F++CFS    G+   FL    G SF E+V+RLA  AG+ LP V  + E++EK +  L  +
Sbjct: 56  FFHCFSSGQHGNIFDFLMLTEGLSFPEAVERLANDAGLALPRVSAESEEREKQRAGLHEI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF  +L++        YL +RG+       F+LG++P  +Y+LR+HL  KG + 
Sbjct: 116 LEWAALFFEKALQSPAGANARTYLAQRGLSPDLQTRFRLGFSPPEKYALRDHLAGKGATR 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E +IEAGLL+ G   A  YDRFR R++FPI    G+VIAFGGR LSK  + KYLNSPET 
Sbjct: 176 EAMIEAGLLVHGPEIAVPYDRFRERIMFPIADRSGRVIAFGGRALSKDVAAKYLNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN   A                +  +I VEGY+DV+++  AG  +VV+ LGT
Sbjct: 236 LFHKGAGLYNLHQARKPAH----------EAGTVIAVEGYVDVIAMTAAGFPHVVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q  LLW+++   +LCFDGD  G +AAY+A D+ L  L P + + F LL  G+DPD
Sbjct: 286 ALTRDQCALLWRMAEEPILCFDGDRAGRKAAYRAADVALPLLGPSHSLRFALLPEGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R  G+ A E ++ ++LPLVD++W RETE   F TP+ RA LE  L++    IKD  L
Sbjct: 346 DLARSGGRMAIEGVLEKALPLVDLVWMRETEAGGFTTPERRAALEQRLEDLARGIKDPTL 405

Query: 421 RYYYSQAIRDRLQQLFQKYITE----------------------HSGYGRYWKKNARHRD 458
           + YY     +RL  LF                                 R   +++R + 
Sbjct: 406 QRYYRGEFANRLAALFGPLAAPASDRRDPSRPFGARSSFPRSPFQGRGARNDNRSSRFQS 465

Query: 459 QKGPSQRLMQSSLVKGKL---------SKKPSLREAALLLTLINHPAILQEQYQELADIR 509
               +   + SSL + +L         +  P  REA +LL L+ HP ++    + LA + 
Sbjct: 466 PDFKAPLQISSSLARSRLLQTARSDAANDLPPSREALILLLLLRHPGLIDRHVEALAALD 525

Query: 510 YDNNELQKLWSFLFSDF----VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
           + N E   L S L         +      E +  RL   G G LL++L+  +  A  W  
Sbjct: 526 FVNTEASALRSLLLEAAWHDGADDLPPSHEALLDRLTAEGKGALLQKLESVIPVASHWYL 585

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
             +A  +D     +QA+ L++R   L R+ +  +  +A+ T +            L ++ 
Sbjct: 586 QPDAADIDAEALLEQAITLHQRAGALHRELQLAKAALAEDTNETN-------FDRLKDIQ 638

Query: 626 IQIHQIESQEAMIEGFGKMSGR 647
            Q+  +   EA +EGFG  SGR
Sbjct: 639 AQLQALGGTEAAVEGFGFSSGR 660


>gi|163868738|ref|YP_001609952.1| DNA primase [Bartonella tribocorum CIP 105476]
 gi|161018399|emb|CAK01957.1| DNA primase [Bartonella tribocorum CIP 105476]
          Length = 645

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 259/643 (40%), Positives = 383/643 (59%), Gaps = 13/643 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P DF+ +L   +PIS +IGQ VD+D RK+   +GD+W CCPFH EKTPSFHC+D KG
Sbjct: 1   MRFPPDFLNELRSRLPISTVIGQRVDFDMRKSKPSRGDFWCCCPFHGEKTPSFHCDDHKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            YYCF C V GD  +FL  L G  F ESV+RLA  AG+ LP+ DP+  +++  + DL  +
Sbjct: 61  RYYCFGCGVSGDIFTFLCELDGLHFSESVERLADFAGMKLPIEDPQNHQRQMEKADLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +++ATDFF + L++    +   YL+ERG+    IE F++G+AP  R +L+E L  +G S 
Sbjct: 121 MKIATDFFQYHLRDKGGAQARRYLEERGVTQKLIERFRIGFAPVKRTALKEALSTRGISI 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++ E GLL   + S  SYDRFRNR++FPI   RG+V+AFGGR L K    KYLNSPET+
Sbjct: 181 KQMEECGLLTVHEESVDSYDRFRNRIMFPIEDLRGRVVAFGGRALEKETRAKYLNSPETV 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN   A    +      V       +++VEGYMDV++L + G + VV+ LGT
Sbjct: 241 LFHKGNILYNAAAARKNSR-----FVGDEKIHSLLVVEGYMDVIALTKVGFEGVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+ LLW++    +LCFDGDD GL+AA++  D VL  L  G  V FVLL +G+DPD
Sbjct: 296 ALTEAQIELLWQMGKEPILCFDGDDAGLKAAFRVADRVLPLLKVGVCVRFVLLPQGKDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +   G   F   + +++PL+++LW R T  + F TP+ RA LE  LK  I  IKD+ +
Sbjct: 356 EIVCAGGAQLFSSFLQKAIPLIELLWWRATYGKQFETPEARAALEKQLKQQIFMIKDEDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R YY Q ++ RL   F+   ++  G GRY +  + +R  K  S  L+ +S +    S+  
Sbjct: 416 RRYYLQDVKKRLFDFFRPPFSKKKGGGRYGQ-TSPNRIFKDQSFSLLANSEIVRNSSQAI 474

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LREA +LLTL  +P +  E ++ L+++   N +L      +     EQ     E +   
Sbjct: 475 PLREAVILLTLAYYPELWHENFEILSELELKNTQLICFHQTMLEILGEQTLHDKETMVAF 534

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L +RG   LL+++   VR+ G+      A+I D R   +QA+ L+ +   L ++ ++IE+
Sbjct: 535 LEKRGQKALLERMKHLVRNIGMRIIFGGASIEDARAILKQAVYLHLQEHHLHKRLQDIEE 594

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
           Q+ +            +  +L E+  ++ Q+++ EA+IEGFG 
Sbjct: 595 QLVENPKS-------EVFDLLREIKNELEQMQATEALIEGFGS 630


>gi|240850914|ref|YP_002972314.1| DNA primase [Bartonella grahamii as4aup]
 gi|240268037|gb|ACS51625.1| DNA primase [Bartonella grahamii as4aup]
          Length = 645

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 256/643 (39%), Positives = 385/643 (59%), Gaps = 13/643 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P DF+ +L   +PIS +IGQ VD+D RK+   +GD+W CCPFH EKTPSFHC+D KG
Sbjct: 1   MRFPPDFLNELRTRLPISTVIGQRVDFDPRKSKPSRGDFWCCCPFHGEKTPSFHCDDHKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            YYCF C V GD  +FL  L G  F ESV+RLA  AG+ LP++D +  K++  + +L  +
Sbjct: 61  RYYCFGCGVSGDIFTFLCELDGLHFSESVERLADFAGMKLPILDSQSHKRQLEKAELYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +++ATDFF ++L++    +   YLD RG+    +E F++G+AP  R +L+E L  +G S 
Sbjct: 121 MKIATDFFQYNLRDKGGVQARRYLDARGVTPELVERFRIGFAPVRRTALKEALSARGISI 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++ E GLL   + SA SYDRFRNR++FPI   RG+V+AFGGR L K    KYLNSPET+
Sbjct: 181 KQMEECGLLTVREGSADSYDRFRNRIMFPIEDLRGRVVAFGGRALEKETRAKYLNSPETV 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN   A    +      V    +  +++VEGYMDV++L +AG + VV+ LGT
Sbjct: 241 LFHKGNILYNAVAARKNSR-----FVGDEKNHSLLVVEGYMDVIALTKAGFEGVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+ LLW++    +LCFDGDD GL AA++  D VL  L  G  V FVLL +G+DPD
Sbjct: 296 ALTEAQIELLWQMGKEPILCFDGDDAGLNAAFRVADRVLPLLKAGVCVRFVLLPQGKDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +   G   F   + +++PL ++LW R T  + F TP+ RA LE  LK  I  IKD+ +
Sbjct: 356 EIVCAGGAQLFSSFLQKAIPLSELLWWRATYGKHFETPETRAALEKQLKQQIFTIKDEDV 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R YY Q ++ RL   F+   ++  G GR + +++ +R  K  S  L+ +S +    S+  
Sbjct: 416 RRYYLQDVKKRLFDFFRPSFSKKKGEGR-YDQSSSNRIFKDQSFSLLANSEIVRNSSQSI 474

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LREA +LLTL  +P +  E ++ L+++   N +L      +      Q+    E +   
Sbjct: 475 PLREAVILLTLAYYPELWYENFEILSELELKNTQLMCFHQAMLEILGNQQLHDKETMIAL 534

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L +RG   LL+++   V++ G+      A+I D R   +QA+ L+ +   L ++ ++I++
Sbjct: 535 LEKRGQKALLERMKHLVQNIGMRIIFGRASIEDARAILKQAVYLHLQEHHLHKRLQDIKE 594

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
           Q+ +            +  +L EV  ++ Q+++ EA+IEGFG 
Sbjct: 595 QLVENPKS-------EVFDLLREVKNELEQMQATEALIEGFGS 630


>gi|49474477|ref|YP_032519.1| DNA primase [Bartonella quintana str. Toulouse]
 gi|49239981|emb|CAF26394.1| DNA primase [Bartonella quintana str. Toulouse]
          Length = 642

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 254/646 (39%), Positives = 378/646 (58%), Gaps = 13/646 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P DF+ ++   +PIS +IGQ V +D +K+   +GD+W CCPFH EKTPSFHC+D KG
Sbjct: 1   MRFPSDFLDEIRTRLPISTVIGQRVVFDPQKSKPSRGDFWCCCPFHGEKTPSFHCDDHKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            YYCF C V GD  +FL  L G  F ESV+RLA  AG+ LPV DP+  K++  + DL  +
Sbjct: 61  RYYCFGCGVSGDIFTFLCELDGLRFSESVERLADFAGMKLPVSDPQSHKRQMEKADLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +++A DFF +SL +    +   YLDERG+     E F++G+AP  R +L+E L  +G S 
Sbjct: 121 MKIAMDFFQYSLHDKGGAQARRYLDERGVTPKLAERFRIGFAPIRRTALKEALSARGISI 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++ + GLL   ++  TSYDRFRNR++FPI   RG+V+AFGGR L K    KYLNS ET+
Sbjct: 181 KQMEDCGLLKVNEDGTTSYDRFRNRIMFPIEDLRGRVVAFGGRALEKDTQAKYLNSSETV 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN   A    +      V    +  +++VEGYMDV++L +AG + VV+ LGT
Sbjct: 241 LFHKGNMLYNAAAARKNSR-----LVGDKKNHSLLVVEGYMDVITLTKAGFERVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+ LLW++    + CFDGD+ GL+AA++  + VL  L  G  V FVLL +G+DPD
Sbjct: 296 ALTEAQIALLWQIGSDPIFCFDGDEAGLKAAFRVAERVLPLLKVGVSVRFVLLPQGKDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I   G   F   + +S+ L+++LW R T  + F TP+ RA LE  LK  I  I D  +
Sbjct: 356 EIICAGGAQLFASFLQKSISLIELLWWRATYGKDFETPEARAALEKQLKQQIFTINDADI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R YY Q I+ RL   F+ +  +    G+ + +N ++R  K  S  ++ +S +    S   
Sbjct: 416 RRYYFQDIKKRLFDFFRPFFLKKKDAGQ-YDQNPKNRIFKDQSFSMLANSNIIRDSSHSV 474

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LREA +LL L  +P +  E ++ LA +   N +L  L   +      Q+    E +   
Sbjct: 475 PLREAVILLILAYYPELWYENFEVLAALELQNTQLVSLHQSMLEVLGSQQLHNKETMIAF 534

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L ERG   LL+++   V++ G+ +    A I D R   +QA+ L+ +   L ++ ++IE+
Sbjct: 535 LEERGQKTLLERMKNLVQNVGMRTVFAGAPIEDARAVLKQAIYLHLQEYHLHKRLQDIEE 594

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
           Q+ +            + ++L E+ I++ Q ++ EA+IEGFG   G
Sbjct: 595 QLVENPN-------NEIFNLLREIKIELEQTQATEALIEGFGSGFG 633


>gi|319408881|emb|CBI82538.1| DNA primase [Bartonella schoenbuchensis R1]
          Length = 645

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 256/642 (39%), Positives = 375/642 (58%), Gaps = 13/642 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P DFI ++   +PIS +I Q V +D +K+   +GD+W CCPFH EKTPSFHCND KG
Sbjct: 1   MRFPPDFIDEIRSRLPISTVINQRVTFDPQKSKPARGDFWFCCPFHGEKTPSFHCNDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            YYCF C V G+  +FL  L G  F+E+V+RLA +AG+ LPV+DP+  ++E  +  L  +
Sbjct: 61  CYYCFGCGVSGNIFTFLCELDGLQFLEAVERLADLAGMKLPVLDPQSYEREMQKASLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + +ATDFF  SL N   ++  YYL ERG+    I+ F++G+AP  R +L+E L  +G S 
Sbjct: 121 MGMATDFFQCSLHNKEGEQARYYLGERGVTPELIKRFRIGFAPTKRTALKEALSMRGISV 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++ + GLL+ G++    YDRFRNR+IFPI   RG+V+AFGGR L K    KYLNSPET+
Sbjct: 181 KQMEDCGLLVSGEDVTVPYDRFRNRIIFPIEDLRGRVVAFGGRGLDKNVRAKYLNSPETV 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN   A           +    +  I++VEGYMDV++L +AG + VV+ LGT
Sbjct: 241 LFHKGNMLYNAASARKSNH-----SIEEKKARSILVVEGYMDVIALTKAGFEKVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+ LLW++ P  V CFDGDD GL+AA++  D VL  L  G  V+F+LL +GEDPD
Sbjct: 296 ALTEEQIALLWQIEPDCVFCFDGDDAGLKAAFRVADRVLPLLRVGVSVHFILLPQGEDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G   F   + +S+PL+++LW R T  + F TP+ RA LE  LK  +  IKD+ +
Sbjct: 356 EIIRAGGAPLFNSFLQKSIPLIELLWWRATYGQRFETPETRAALERRLKQEVFTIKDEDV 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R YY Q I+ RL   F     +      Y K       +      L  S++V+  L    
Sbjct: 416 RRYYFQDIKKRLFDFFSPSFLQKKNTAGYGKNQKNEIFKGQSFSSLENSNMVR-NLPHSI 474

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LREA +LL L ++P +  E ++ L+ +   N EL      +      Q+      + + 
Sbjct: 475 PLREAVILLILAHYPDLWYENFEVLSKLELKNTELTNFHQSMLEILGSQQIHDKAVMIEL 534

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L E+G   +L+++   V+  G+ +  T+A I D R   +QA+ L+ R   L ++ ++IE+
Sbjct: 535 LEEKGQKAILERMRNLVQSVGMRTTFTKAPIEDARAVLKQAIYLHLREHHLHKRLQDIEE 594

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           Q+ +            +  +L E   ++ Q+ + EA+IEGFG
Sbjct: 595 QLMENPN-------NEVFDLLRETKTELEQMRATEALIEGFG 629


>gi|319898527|ref|YP_004158620.1| DNA primase [Bartonella clarridgeiae 73]
 gi|319402491|emb|CBI76034.1| DNA primase [Bartonella clarridgeiae 73]
          Length = 642

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 250/643 (38%), Positives = 371/643 (57%), Gaps = 13/643 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P DF+ ++   +PIS +IGQ V +D +K+   +GD+W CCPFH EKTPSFHC+D +G
Sbjct: 1   MRIPPDFLDEIRARLPISTVIGQRVTFDPKKSKPSRGDFWCCCPFHGEKTPSFHCDDRQG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            YYCF C+  GD  +FL  L G  F ESV+RLA  AG+ LPV D +  K E  + DL  +
Sbjct: 61  RYYCFGCNTSGDIFTFLCELDGLRFSESVERLAGFAGMKLPVFDLQNHKGEIKKNDLYDI 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +++A DFF ++L +    +  +YL  RG+     + F++G+AP  R +L++ L  +G S 
Sbjct: 121 MKIAADFFQNNLHHQIGTQARHYLGARGVTLELAKRFQIGFAPVGRTALKDALSARGISL 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++ + GLLI G++ A  YDRFRNR+IFPI+  RG+V+AFGGR+L K    KYLNSPET+
Sbjct: 181 KQMEDCGLLISGEDIAIPYDRFRNRIIFPIKDLRGRVVAFGGRSLDKNAQAKYLNSPETV 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN   A    +        +  +  I++VEGYMDV++L + G + VV+ LGT
Sbjct: 241 LFHKGNTLYNAASARKNSR-----SSVKGEAHSILVVEGYMDVIALTKVGFEKVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+ LLW++ P  +LCFDGDD GL+AA++  D VL  L  G  V FVLL  G+DPD
Sbjct: 296 ALTETQIGLLWQMEPNPILCFDGDDAGLKAAFRVADRVLPLLKAGMSVRFVLLPNGKDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G   F   + +S+PL+++LW R T  + F TP+ RA LE  LK  I+ IKDQ +
Sbjct: 356 EIIRAGGAHLFSSFVQKSIPLIELLWWRATFGKHFTTPEARAALERELKQQISTIKDQDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R YY Q I+ RL   F+    +     +Y +       +      L  S++V+   +   
Sbjct: 416 RRYYFQDIKRRLFDFFRSSFLKQKNEEKYVQDQKDGMFKDQSFSALANSNIVRSSKN-FI 474

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LREA +LL L  +P +  E ++ LA +   N++L  L   +      Q+    E +   
Sbjct: 475 PLREAVILLILAYYPELWYENFEVLAKLELKNDQLISLHQSMLEILGNQELCDKETMAVF 534

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L ++G   +L+ +D  V+  G+      A I D R   +QA+ L+ +   L ++ ++IE+
Sbjct: 535 LEKKGQKAILEYIDSLVQKVGMRITFGGAPIEDARTVLKQAIYLHLQEHHLHKRLQDIEE 594

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
           Q+              +  +L E   ++ Q ++ EA+IEGFG 
Sbjct: 595 QLI-------KNPRDEVFDLLRETKAELEQTQATEALIEGFGS 630


>gi|49475879|ref|YP_033920.1| DNA primase [Bartonella henselae str. Houston-1]
 gi|49238687|emb|CAF27937.1| DNA primase [Bartonella henselae str. Houston-1]
          Length = 645

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 255/643 (39%), Positives = 377/643 (58%), Gaps = 13/643 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +  DF+ +L   +PIS +IGQ V +D +K+   +GD+W+CCPFH EKTPSFHC+D KG
Sbjct: 1   MRFSPDFLDELRTRLPISTVIGQRVTFDPQKSKPSRGDFWSCCPFHGEKTPSFHCDDHKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            YYCF C V GD  +FL  L G  F ESV RLA  AG+ LP+ DP+  K +  + DL  +
Sbjct: 61  RYYCFGCGVSGDIFTFLCELDGLHFSESVVRLADFAGMKLPLFDPQSHKSQMGKADLYNV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +++ATDFF +SL++    +   YLD RG+     E F++G+AP  R +L+E L  +G S 
Sbjct: 121 MKIATDFFQYSLRDKAGVQARRYLDARGVTPKLAERFRIGFAPTRRTALKEALNARGISI 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++ E GL+  G++  TS DRFRNR++FPI   RG+V+AFGGR L K    KYLNSPET+
Sbjct: 181 KQMEECGLIKMGEDGTTSSDRFRNRIMFPIEDLRGRVVAFGGRALEKDIRAKYLNSPETV 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN   A    +      V    +  +++VEGYMDV++L +AG +  V+ LGT
Sbjct: 241 LFHKGDMLYNAASARKNSR-----LVGDEKNHALLVVEGYMDVITLTKAGFEGAVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+ LLW++    +LCFDGDD GL+AA++  D VL  L  G  V FVLL +G+DPD
Sbjct: 296 ALTEAQIALLWQIGTDPILCFDGDDAGLKAAFRVADRVLPLLKAGVSVRFVLLPQGKDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I   G   F   + +S+PL+++LW R T  ++F  P+ RA LE  LK  I  IKD+ +
Sbjct: 356 EIICAGGAELFTSFLQKSIPLIELLWWRATYGKNFEIPEARAALEKQLKQQIFTIKDEDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R YY Q I+ RL   F+   +     GR ++ ++ +R  K  S  ++ +S +    S   
Sbjct: 416 RRYYLQDIKKRLFDFFRPSFSNKKFTGRSYQ-SSPNRILKDQSFSVLANSNIVRNSSHSI 474

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LREA +LL L  +P +  E ++ LA++   N +L +    +      Q+    E +   
Sbjct: 475 PLREAVILLILAYYPELWYENFEVLAELELQNTQLVRFHQSMLEILGNQQLHDKETMIAL 534

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L ERG   LL+ +   V+  G+ +    A I D R   +QA+ L+ +   L ++ ++IE+
Sbjct: 535 LEERGLKVLLELMKNLVKKIGMRTIFYGAPIEDARAILKQAIYLHLQEYHLHKRLQDIEE 594

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
           Q+ +            +  +L E  I++ Q+++ EA+IEGFG 
Sbjct: 595 QLVENPKS-------EVFDLLCETKIELEQMQATEALIEGFGS 630


>gi|170747006|ref|YP_001753266.1| DNA primase [Methylobacterium radiotolerans JCM 2831]
 gi|170653528|gb|ACB22583.1| DNA primase [Methylobacterium radiotolerans JCM 2831]
          Length = 629

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 212/638 (33%), Positives = 333/638 (52%), Gaps = 24/638 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP   ++++   +P S+++G+ V   +        ++    PF+ EKTPSF+ ND K 
Sbjct: 1   MRYPPHILEEIRSRLPASSVVGRRVQLKKAGR-----EWRGLSPFNAEKTPSFYVNDQKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CFS    GD  +FL    G SF E+V+RLA  AGV LP         E+ +   I +
Sbjct: 56  FYHCFSSSKHGDIFTFLMETEGLSFPEAVERLAGEAGVSLPAPTEDNRASEQKRAGAIEV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  +F   L++ +      YL+ RG+       F+LGYAP+ RY+LR+HL  +G  +
Sbjct: 116 MEMAARWFEERLRSGQGSEARAYLERRGLRDETQRAFRLGYAPNDRYALRDHLAGQGVEK 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             ++E GLL  G+  +  YD FR+R++FPI  +RG+V+AFGGR L+K    KYLNSPET 
Sbjct: 176 ALMVELGLLAAGEGVSVPYDYFRDRVMFPITDTRGRVVAFGGRALAKEVRAKYLNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN  GA                   II VEGY+DV+++  AG    V+ LGT
Sbjct: 236 LFHKGRTLYNLHGARKVAH----------ERGSIIAVEGYVDVIAMTLAGHPETVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW+ +   +LCFDGD  G RAAY+A+D+ L  L PG  +   LL  G+DPD
Sbjct: 286 ALTEDQLALLWRHADEPILCFDGDKAGQRAAYRALDIALPLLEPGRSLRIALLPGGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G TA ++++  +LPL ++LW+R  E    +TP+ RA L   L+  +  I+D+ +
Sbjct: 346 DLLRSGGPTAIDQVLTAALPLSELLWRRALEAGPVDTPERRAGLTQTLRTTVATIRDETV 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP--SQRLMQSSLVKGKLSK 478
           R YY   I +RL+ L  +         R  ++  R  +   P  +     S       + 
Sbjct: 406 RRYYRDDIEERLRGLSPRGNRAAGAAPRGRQRFTRPGEPVSPRITGSPSPSVTASAGFTG 465

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             S+REA ++ TL+ HP ++ E  +E A++ +++ + + L S L +   E ++  PE + 
Sbjct: 466 AASVREAVIVGTLLAHPEMMAEFGEEAAELDFEDPDARALLSVLLACAAEDEHAAPEVLQ 525

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R+   G      ++    R     +    A+        +QA+ L+++   L       
Sbjct: 526 NRINRAGLTGAADRILALARSRDRTTLAPHADPAHRADALRQAMILHRQAGALH------ 579

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             ++ +     E + T    + L EV  ++  + + EA
Sbjct: 580 -SELREARQAFEDDPTDAGWAWLCEVKARLETVIAAEA 616


>gi|121602151|ref|YP_989246.1| DNA primase [Bartonella bacilliformis KC583]
 gi|120614328|gb|ABM44929.1| DNA primase [Bartonella bacilliformis KC583]
          Length = 646

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 257/642 (40%), Positives = 379/642 (59%), Gaps = 13/642 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P DF+ ++   +PIS +IGQ V +D RK+ + +GD+W CCPFH EKTPSFHC+D KG
Sbjct: 2   MRFPPDFLDEIRTRLPISTVIGQRVTFDPRKSKSSRGDFWCCCPFHGEKTPSFHCDDRKG 61

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           +Y+CF C V GD  +FL  L G  F ESV+RLA +AG+ LPV+D +  K+E  + DL  +
Sbjct: 62  YYHCFGCGVSGDIFNFLCELDGLQFSESVERLADLAGMKLPVLDLQSYKREMQKADLYDV 121

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + +ATDFF ++L +    +   YLDERGI     + F++G+AP  R +L+E L  +G S 
Sbjct: 122 MAIATDFFQNNLYDKGGAQARQYLDERGITPELAKRFRIGFAPAKRTALKEVLSARGVSV 181

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++ + GLLI G++ A  YDRFRNR+IFPI+  RG+V+AFGGRTL +    KYLNSPET+
Sbjct: 182 KQMEDCGLLISGEDIAVPYDRFRNRIIFPIQDLRGRVVAFGGRTLDQDVQAKYLNSPETV 241

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN   A                +  I++VEGY+DV+SL +AG + VV+ LGT
Sbjct: 242 LFHKGNILYNAASARKNN-----SFTSGEKAPSILVVEGYIDVISLIKAGFEKVVAPLGT 296

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+ LLWK+S   +LCFDGDD GL+AA++  D VL  L  G  V F+LL +G+DPD
Sbjct: 297 ALTEAQIELLWKMSSDPILCFDGDDAGLKAAFRVADRVLPLLKAGLSVRFILLPQGQDPD 356

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G   F+  + +S+PL+++LW R T  + F TP+ERA LE  LK  I  IKD+ +
Sbjct: 357 EIVRVGGAKFFDSYVQKSIPLIELLWLRATYGKRFETPEERAALERELKQEIFKIKDESV 416

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R YY Q I+ RL   F+   ++      Y +       Q      L  S +V+      P
Sbjct: 417 RRYYLQDIKKRLFDFFRSSFSKKKSTEGYSENQKNGIFQGKIFSALENSDMVRTSSHSIP 476

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LREA +LL L ++P +  E ++ LA++   N +L      +      Q     E +   
Sbjct: 477 -LREAVILLVLAHYPDLWHENFEVLAELELKNTQLMNFHQSMLEILGSQCLLAEETMIIA 535

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L ++G   +L+ +   V+  G+ +    A I D R   +QA+ L+ +   L ++ ++IE+
Sbjct: 536 LEKKGQKIILEHMMNLVQKVGMRTFFARAPIEDARSVLKQAIYLHLQEHHLHKRLQDIEE 595

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           Q+           ++ +  +L E  +++ Q  + EA+IEGFG
Sbjct: 596 QLL-------NNPSSEIFDLLRETKVELEQTHATEALIEGFG 630


>gi|217977789|ref|YP_002361936.1| DNA primase [Methylocella silvestris BL2]
 gi|217503165|gb|ACK50574.1| DNA primase [Methylocella silvestris BL2]
          Length = 647

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 230/665 (34%), Positives = 338/665 (50%), Gaps = 41/665 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ D+   +P+S ++ + V   R        ++    PF+ EKTPSF  ND K 
Sbjct: 1   MRFSPSFLDDVKARLPVSEVVRRRVKLIRAGR-----EWKGLSPFNTEKTPSFFVNDQKM 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++  S    G+   F+    G SF E+V+RLAA AGVPLP   P+ E +E+ +  L   
Sbjct: 56  AWFDLSAGKNGNIFDFVMETEGLSFREAVERLAAEAGVPLPQASPEAEAQEQKRAGLHET 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + +A DFF   L      +   YL  R + + A + F++GYAP  +++LR+HL  KG + 
Sbjct: 116 LGLAADFFCAQLAGPSGGKARDYLTGRALSAEAQKNFRIGYAPADKFALRDHLAGKGVAR 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + +IEAGLLI G++ A  YDRFR+R+IFPI    G+ IAFGGR LS     KYLNSPET 
Sbjct: 176 DTMIEAGLLIHGEDIAVPYDRFRDRIIFPICDRSGRPIAFGGRALSAEAQPKYLNSPETT 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  L+N   A               SS  II+VEGY+DV++L +AG    V+ LGT
Sbjct: 236 LFHKGGVLFNHHRARTAAH----------SSDRIIVVEGYVDVIALSEAGFAETVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q  LLW+++   +LCFDGD  G +AAY+AID+ L  +  G  + F LL  G+DPD
Sbjct: 286 ALTPDQAELLWQMTAEPILCFDGDKAGRKAAYRAIDMALPLIGAGRSLRFALLPEGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  A   ++ ++LPL D++W+RETE   F+TP+ RA  E  L      I+D+ L
Sbjct: 346 DLIRSAGPHAMADVLSQALPLADLIWRRETEGADFSTPERRAGFERRLDEIAQEIRDETL 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------------GP 462
           R YY    R R Q LF    +      R   + A+   +                     
Sbjct: 406 RRYYRDEFRQRRQSLFAPQRSTVKAPWREGSRPAQGARRGFGPGRDGFQTADAAPVRLTA 465

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           S  L  S+L+    +     REA +LL LI+HP ++++  +++ADI +   +   L   L
Sbjct: 466 SPSLAGSALMMRSGASGLPPREALILLILISHPGLIEQHLEDIADIEFSGRDAGVLRDRL 525

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                      P        E GFG +L +LD     A  W     A   D  +  +QAL
Sbjct: 526 IDKVSSAP-LDPAGARAFAQEEGFGAVLARLDAFAAHASHWYMKENAAEADADEVLKQAL 584

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
            L+ + R L++     ++   +       + T + ++ L  +   ++ +   EA +EGFG
Sbjct: 585 TLHHKERGLNKDLRAAQQAFER-------DMTDVNLARLKAIREDLNALGGTEATVEGFG 637

Query: 643 KMSGR 647
            +SGR
Sbjct: 638 ALSGR 642


>gi|319403850|emb|CBI77436.1| DNA primase [Bartonella rochalimae ATCC BAA-1498]
          Length = 642

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 243/643 (37%), Positives = 369/643 (57%), Gaps = 13/643 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P DF+ ++   +PIS +IGQ V +D++K+   +GD+W CCPFH EKTPSFHC+D +G
Sbjct: 1   MRIPPDFLDEIRARLPISVVIGQRVIFDQKKSKPSRGDFWCCCPFHGEKTPSFHCDDRRG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            YYCF C+  GD  +FL  L G  F ESV+RLA  AG+ LP  D +  K E  + DL  +
Sbjct: 61  RYYCFGCNTSGDIFTFLCELDGLRFSESVERLANFAGMKLPAFDLQNHKDEMKKNDLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +++ATDFF ++L +    +  +YLDERG+     + F++G+AP  R +L++ L  +G S 
Sbjct: 121 MKIATDFFQNNLHHQIGAQARHYLDERGVTLELAKRFQIGFAPIGRTTLKDALSARGISL 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++ + GLLI G++ +T YDRFRNR+IFPI   RG+V+AFGGR+L K    KYLNSPET+
Sbjct: 181 KQMEDCGLLISGEDISTPYDRFRNRIIFPIEDLRGRVVAFGGRSLDKNARAKYLNSPETV 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN        +        +  +  +++VEGYMDV++L + G + VV+ LGT
Sbjct: 241 LFHKGNMLYNAASVRKNSR-----ASEKKEACSVLVVEGYMDVIALTKVGFEKVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+ LLW++    +LCFDGD+ GL+AA++  D VL  L  G  V FVLL  G+DPD
Sbjct: 296 ALTETQIELLWQMESDPILCFDGDNAGLKAAFRVADRVLPLLKAGKSVRFVLLPNGKDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR      F   + +++PL+++LW R T  + F TP+ RA LE  LK  I  IKD+ +
Sbjct: 356 EIIRTGDAHLFSSFVQKAIPLIELLWWRATSGKHFTTPEARAALERELKQQIATIKDKDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
             YY Q I+ RL   F+  + +    G Y +       +      L  S++V+       
Sbjct: 416 HRYYFQDIKRRLFAFFRSSLLKQKKQGEYIQNQKDGMFKDQSFSALENSNIVRSSKH-FI 474

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LREA +LL L  +P +  E +   A++   N++L  L   +      Q+    E +   
Sbjct: 475 PLREAVILLILAYYPELWYENFDVFAELELKNDQLMSLHQSMLEILGNQQLCDKETMTVL 534

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L E+G   +L+ +D  V+  G+      A + D R   +QA+ L+ +   L ++ ++IE+
Sbjct: 535 LEEKGKKSILEHIDNLVQRVGMRITFGGAPVEDARAVLKQAIYLHLQEHHLHKRLQDIEE 594

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
           ++              +  +L EV  ++ + ++ EA+IEGFG 
Sbjct: 595 ELI-------KNPRDEVFDLLREVKAELERTQATEALIEGFGS 630


>gi|319406861|emb|CBI80496.1| DNA primase [Bartonella sp. 1-1C]
          Length = 642

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/643 (38%), Positives = 372/643 (57%), Gaps = 13/643 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P DF+ ++   +PIS +IGQ V +D++K+   +GD+W CCPFH EKTPSFHC+D +G
Sbjct: 1   MRIPPDFLDEIRARLPISVVIGQRVKFDQKKSKPSRGDFWCCCPFHGEKTPSFHCDDRQG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            YYCF C+  GD  +FL  L G  F ESV+RLA  AG+ LPV+D +  K E  + DL  +
Sbjct: 61  RYYCFGCNTSGDIFTFLCELDGLRFSESVERLANFAGMKLPVLDLQNHKDEMKKNDLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +++ATDFF ++L +    +  +YLDERG+       F++G+AP  R +L++ L  +G S 
Sbjct: 121 MKIATDFFQNNLHHQIGAQARHYLDERGVTLELARRFQIGFAPIGRTTLKDALSARGISL 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++ + GLLI G++ +T YDRFRNR+IFPI   RG+V+AFGGR+L K    KYLNSPET+
Sbjct: 181 KQMEDCGLLISGEDISTPYDRFRNRIIFPIEDLRGRVVAFGGRSLDKSARAKYLNSPETV 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN        +        +  +  +++VEGYMDV++L + G + VV+ LGT
Sbjct: 241 LFHKGNMLYNAASIRKNSR-----AAEKKEACSVLVVEGYMDVIALTKVGFEKVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+ LLW++    +LCFDGD+ GL+AA++  D VL  L  G  V FVLL  G+DPD
Sbjct: 296 ALTETQIELLWQMESDPILCFDGDNAGLKAAFRVADRVLPLLKAGKSVRFVLLPNGKDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR      F   + +++PL+++LW R T  + F TP+ RA LE  LK  I  IKD+ +
Sbjct: 356 EIIRAGDAHLFSSFVQKAIPLIELLWWRATSGKHFTTPEARAALERELKQQIATIKDKDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
             YY Q I+ RL + F+  + +H   G Y +       +      L  S++V+       
Sbjct: 416 YRYYFQDIKRRLFEFFRSSLLQHKKQGEYIQNQKDGMFKDQSFSALENSNIVRSSKH-FI 474

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LREA +LL L  +P +  E +   A++   N +L  L   +      Q+ +  E +   
Sbjct: 475 PLREAVILLILAYYPELWYENFDVFAELELKNAQLMSLHQSMLEILGNQQLYDKETMTVL 534

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L E+G   +L+ +D  V+  G+      A + D R   +QA+ L+ +   L ++ ++IE+
Sbjct: 535 LEEKGKKSILEHIDNLVQRIGMRITLGGAPVEDARAVLKQAIYLHLQEHHLHKRLQDIEE 594

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
           ++              +  +L EV  ++ + ++ EA+IEGFG 
Sbjct: 595 ELI-------NNPRDEVFDLLREVKAELERTQATEALIEGFGS 630


>gi|319405290|emb|CBI78904.1| DNA primase [Bartonella sp. AR 15-3]
          Length = 635

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 244/643 (37%), Positives = 370/643 (57%), Gaps = 13/643 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P DF+ ++   +PIS +IGQ V +D++K+   +GD+W CCPFH EKTPSFHC+D +G
Sbjct: 1   MRIPPDFLDEIRARLPISVVIGQRVTFDKKKSKPSRGDFWCCCPFHGEKTPSFHCDDRQG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            YYCF C+  GD  +FL  L G  F ESV+RLA  AG+ LP  D +  K E  + DL  +
Sbjct: 61  RYYCFGCNTSGDIFTFLCELDGLRFSESVERLANFAGMKLPTFDLQNHKDEMKKNDLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +++ATDFF ++L +    +  +YL ERG+     + F++G+A   R +L++ L  +G S 
Sbjct: 121 MKIATDFFQNNLHHQIGAQARHYLYERGVTLELAKRFQIGFASVGRTTLKDALSVRGISL 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++ + GLLI G++ +T YDRFRNR+IFPI+  RG+V+AFGGR+L +    KYLNSPET+
Sbjct: 181 KQMEDCGLLISGEDISTPYDRFRNRIIFPIQDLRGRVVAFGGRSLDENARAKYLNSPETV 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN        +        +  +  +++VEGYMDV++L +AG + VV+ LGT
Sbjct: 241 LFHKGNMLYNAASVHKNSR-----ISEKGEAYSVLVVEGYMDVIALTKAGFEKVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+RLLW++    +LCFDGD  GL+AA++  D VL  L  G  V FVLL  G+DPD
Sbjct: 296 ALTETQIRLLWQMESDPILCFDGDSAGLKAAFRVADRVLPLLRAGKSVRFVLLPNGKDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR      F   + +S+PL+++LW R T  + F TP+ RA LE  LK  I+ IKDQ +
Sbjct: 356 EMIRAGDAHLFSSFVQKSIPLIELLWWRATFGKHFPTPEARAALERELKQQISTIKDQDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R YY Q I+ RL   F+    +     R + +N +       S   +++S +        
Sbjct: 416 RRYYFQDIKRRLFDFFRSSFLKQKNQ-REYIQNQKDGMFNDQSFSALENSNIVRSSKHFI 474

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LREA +LL L  +P +  E +   A++   N +L  L   +      Q+    E +   
Sbjct: 475 PLREAVILLILAYYPELWYEDFDVFAELELKNAQLISLHQSMLEILGSQQLCDKETMSVL 534

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L ++G   +L+ +D   +  G+   +  A I D R   +QA+ L+ +   L ++ ++IE+
Sbjct: 535 LEKKGKKTILEHIDNLAQRVGMRITSGGAPIEDARAVLKQAIYLHLQEHHLHKRLQDIEE 594

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
           Q+              +  +L EV  ++ + ++ EA+IEGFG 
Sbjct: 595 QLI-------KNPRDEVFDLLREVKAELERTKALEALIEGFGS 630


>gi|300023332|ref|YP_003755943.1| DNA primase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525153|gb|ADJ23622.1| DNA primase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 661

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 218/667 (32%), Positives = 332/667 (49%), Gaps = 54/667 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +  +F+ ++   +P+S ++G+ V   +        +Y    PF  EK+PSF  ND KG
Sbjct: 1   MRFNPNFLDEIRARLPVSQVVGRKVALKKAGR-----EYRGLSPFKTEKSPSFFVNDQKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF+    GD  +FL    G  F E+V+RLA  AGVP+P    +    E  +  L RL
Sbjct: 56  FYHCFASGEHGDIFTFLMKTEGLEFPEAVERLAQEAGVPMPKQPERNVADEDQRDRLYRL 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E +  FF  SL++        Y+++RG+    +  F+LG+AP+SR +L  HL+ KGFS 
Sbjct: 116 LEASAAFFEESLRSGLGAEARRYIEKRGLQHETVRAFRLGFAPNSRTALTAHLKGKGFSL 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +  AG+LI G +    YDRFRNR++FPI   +G+VIAFGGR L K    KYLNSPET 
Sbjct: 176 ADMASAGMLIAGSDIPEPYDRFRNRVMFPILDLKGRVIAFGGRALEKDVPAKYLNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  L+N   A +      R          +I+VEGYMDV++L + G    V+ LGT
Sbjct: 236 LFHKGHTLFNAARARSAAHDKNR----------VIVVEGYMDVVALAEGGFAESVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q++LLW+ +P   LCFDGD  G +AA +A+++ L  L PG+ + F  L  G DPD
Sbjct: 286 ALTEDQVKLLWRFAPEPTLCFDGDSAGRKAADRAVEVALPWLKPGHSLGFAFLPDGLDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  A    + ++ PLVD+LW RE      +TP++RA LE  L   +  I+D  +
Sbjct: 346 DLIRQQGAAAMSDALSKARPLVDVLWDRELRAAPSDTPEQRAALEARLFALVGTIQDATV 405

Query: 421 RYYYSQAIRDRLQQLFQKYITE-------------------HSGYGRYWKKNARHRDQKG 461
           R +Y + +RDRL QL +                                 K        G
Sbjct: 406 RSHYQRELRDRLYQLGRNRFPRPMAGLPTGRQGGGIAQASYARPVAAPDWKARDRARLNG 465

Query: 462 PSQRLMQSSLVKGKLSKKPSL---------REAALLLTLINHPAILQEQYQELADIRYDN 512
           P +R  + +     ++  P L         REA ++ TL+NHP ++ E  + +A I + +
Sbjct: 466 PERRFTKKNNAPELVNASPELAGHMQSVLPREALIMKTLLNHPWLIDEHSEAIAVIEFSS 525

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
             L  L   + +    Q       +  +L + G  +++  + R +       A  +A+  
Sbjct: 526 QPLTALRDEILAVHARQNSLDRASLGTQLSKSGVAKVVDLVARTITHISDRFAEPDASAT 585

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           DV   +   LAL++R   L R  +  E+   +       + T    + L ++  QI +  
Sbjct: 586 DVEAAWNHILALHQRQDALGRALKAAEEAWYR-------DCTEEAETHLLDIKRQIAR-- 636

Query: 633 SQEAMIE 639
             EA ++
Sbjct: 637 --EASMD 641


>gi|218528656|ref|YP_002419472.1| DNA primase [Methylobacterium chloromethanicum CM4]
 gi|218520959|gb|ACK81544.1| DNA primase [Methylobacterium chloromethanicum CM4]
          Length = 641

 Score =  456 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 203/648 (31%), Positives = 321/648 (49%), Gaps = 41/648 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP   ++++   +P S ++G+ V   +        ++    PF+ EKTPSF+ ND K 
Sbjct: 1   MRYPPHILEEIRARVPTSEVVGRRVRLKKAGR-----EWRGLSPFNSEKTPSFYVNDQKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CFS    GD   F+    G SF E+V+RLA  AGV LP +  + E+ E+ +   + +
Sbjct: 56  FYHCFSSGKHGDIFKFVMETEGLSFPEAVERLAGEAGVTLPKMTVENEQAEERRKGALEV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  +F   L+         YLD R +     + F+LGY+   RY+LR+ L  KG   
Sbjct: 116 MELAAAYFEEQLRGQAGGEARAYLDRRALGEATRKTFRLGYSLPGRYALRDFLASKGVDR 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++E GLL   +     YD+FR+R++FPI   RG+V+AFGGR +      KY+NSPET 
Sbjct: 176 DLMLELGLLTAPEGVNVPYDKFRDRIMFPILDIRGRVVAFGGRAMQAEAKAKYMNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A        R          I+ VEGY+DV+++  AG    V+ LGT
Sbjct: 236 LFHKGRMLYNLHAARKAAHDRSR----------IVAVEGYVDVIAMTLAGYPETVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW+ +   +LCFDGD  G RAA++A+D+ L  L PG  +   +L +G+DPD
Sbjct: 286 ALTEDQLALLWRHADEPILCFDGDGAGQRAAFRALDVALPMLEPGKSLRIAMLPQGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G +A E ++  + PLV+MLW RE E  +  TP+ RA L   L+  +  I+D+ +
Sbjct: 346 DLMRSGGPSAIEAVLSAARPLVEMLWAREAEAATLETPERRAGLARTLREAVAGIRDETV 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ---------------- 464
           R +Y   I  RL+ L     +   G             +  P Q                
Sbjct: 406 RRFYRDDIEGRLRGLSDGPASFSGGRSERAAGGRPASPRGAPFQRRPRPGDPPPSPRITT 465

Query: 465 ---RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
               L++++        + + REA ++++L+ HP +L  + + LA +   N + + L + 
Sbjct: 466 GFNPLLKTAAPVPAAGGRAAKREAMIVMSLLAHPELLGIEEEALAALELVNPDARALRTL 525

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L     E      E +  RL   G  E   +L   V     W+    A+   + Q   QA
Sbjct: 526 LLDRAAEAGTPEAELMEARLRRAGLEEAHARLLALVSSGDRWTLDPNADPQRLEQTLHQA 585

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + L+++   L  +  + E+ +A+       + +    + L +V  Q+ 
Sbjct: 586 VILHRQTGALHSELHQAERALAE-------DGSEANFAWLCDVQQQLA 626


>gi|240137187|ref|YP_002961656.1| DNA primase [Methylobacterium extorquens AM1]
 gi|240007153|gb|ACS38379.1| DNA primase [Methylobacterium extorquens AM1]
          Length = 641

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 203/648 (31%), Positives = 321/648 (49%), Gaps = 41/648 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP   ++++   +P S ++G+ V   +        ++    PF+ EKTPSF+ ND K 
Sbjct: 1   MRYPPHILEEIRARVPTSEVVGRRVRLKKAGR-----EWRGLSPFNSEKTPSFYVNDQKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CFS    GD   F+    G SF E+V+RLA  AGV LP +  + E+ E+ +   + +
Sbjct: 56  FYHCFSSGKHGDIFKFVMETEGLSFPEAVERLAGEAGVTLPKMTVENEQAEERRKGALEV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  +F   L+         YLD R +     + F+LGY+   RY+LR+ L  KG   
Sbjct: 116 MELAAVYFEEQLRGQAGGEARAYLDRRALGEATRKTFRLGYSLPGRYALRDFLASKGVDR 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++E GLL   +     YD+FR+R++FPI   RG+V+AFGGR +      KY+NSPET 
Sbjct: 176 DLMLELGLLTAPEGVNVPYDKFRDRIMFPILDIRGRVVAFGGRAMQAEAKAKYMNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A        R          I+ VEGY+DV+++  AG    V+ LGT
Sbjct: 236 LFHKGRMLYNLHAARKAAHDRSR----------IVAVEGYVDVIAMTLAGYPETVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW+ +   +LCFDGD  G RAA++A+D+ L  L PG  +   +L +G+DPD
Sbjct: 286 ALTEDQLALLWRHADEPILCFDGDGAGQRAAFRALDVALPMLEPGKSLRIAMLPQGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G +A E ++  + PLV+MLW RE E  +  TP+ RA L   L+  +  I+D+ +
Sbjct: 346 DLMRSGGPSAIEAVLSAARPLVEMLWAREAEAATLETPERRAGLARTLREAVAGIRDETV 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ---------------- 464
           R +Y   I  RL+ L     +   G             +  P Q                
Sbjct: 406 RRFYRDDIEGRLRGLSGGPASFSGGRSERAAGGRPASPRGAPFQRRPRPGDPPPSPRITT 465

Query: 465 ---RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
               L++++        + + REA ++++L+ HP +L  + + LA +   N + + L + 
Sbjct: 466 GFNPLLKTAAPVPAAGGRAAKREAMIVMSLLAHPELLGIEEEALAALELVNPDARALRTL 525

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L     E      E +  RL   G  E   +L   V     W+    A+   + Q   QA
Sbjct: 526 LLDRAAEAGTPEAELMEARLRRAGLEEAHARLLALVSSGDRWTLDPNADPQRLEQTLHQA 585

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + L+++   L  +  + E+ +A+       + +    + L +V  Q+ 
Sbjct: 586 VILHRQTGALHSELHQAERALAE-------DGSEANFAWLCDVQQQLA 626


>gi|163850053|ref|YP_001638096.1| DNA primase [Methylobacterium extorquens PA1]
 gi|163661658|gb|ABY29025.1| DNA primase [Methylobacterium extorquens PA1]
          Length = 641

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 204/648 (31%), Positives = 321/648 (49%), Gaps = 41/648 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP   ++++   +P S ++G+ V   +        ++    PF+ EKTPSF+ ND K 
Sbjct: 1   MRYPPHILEEIRARVPTSEVVGRRVRLKKAGR-----EWRGLSPFNSEKTPSFYVNDQKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CFS    GD   F+    G SF E+V+RLA  AGV LP +  + E+ E+ +   + +
Sbjct: 56  FYHCFSSGKHGDIFKFVMETEGLSFPEAVERLAGEAGVTLPKMTVENEQAEERRKGALEV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  +F   L+         YLD R +     + F+LGY+   RY+LR+ L  KG   
Sbjct: 116 MELAAAYFEEQLRGQAGGEARAYLDRRALGETTRKTFRLGYSLPGRYALRDFLASKGVDR 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++E GLL   +     YD+FR+R++FPI   RG+V+AFGGR +      KY+NSPET 
Sbjct: 176 DLMLELGLLAAPEGVNVPYDKFRDRIMFPILDIRGRVVAFGGRAMQAEAKAKYMNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A        R          II VEGY+DV+++  AG    V+ LGT
Sbjct: 236 LFHKGRMLYNLHAARKSAHDRSR----------IIAVEGYVDVIAMTLAGYPETVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW+ +   +LCFDGD  G RAA++A+D+ L  L PG  +   +L +G+DPD
Sbjct: 286 ALTEDQLALLWRHADEPILCFDGDGAGQRAAFRALDVALPMLEPGKSLRIAMLPQGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G +A E ++  + PLV+MLW RE E  +  TP+ RA L   L+  +  I+D+ +
Sbjct: 346 DLMRSGGPSAIEAVLSAARPLVEMLWAREAEAATLETPERRAGLARTLREAVAGIRDETV 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ---------------- 464
           R +Y   I  RL+ L     +   G             +  P Q                
Sbjct: 406 RRFYRDDIEGRLRGLSGGPASFSGGRPERAAGGRPAAPRGAPFQRRPRPGDPPPSPRITT 465

Query: 465 ---RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
               L++++        + + REA ++++L+ HP +L  + + LA +   N + + L + 
Sbjct: 466 GFNPLLKTAAPVPAAGGRAAKREAMIVMSLLAHPELLGIEEEALAALELVNPDARALRTL 525

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L     E      E +  RL   G  E   +L   V     W+    A+   + Q   QA
Sbjct: 526 LLDRAAEAGTPEAELMEARLRRAGLEEAHARLLALVSSGDRWTLDPNADPQRLEQTLHQA 585

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + L+++   L  +  + E+ +A+       + +    + L +V  Q+ 
Sbjct: 586 VILHRQTGALHSELHQAERALAE-------DGSEANFAWLCDVQQQLA 626


>gi|254559199|ref|YP_003066294.1| DNA primase [Methylobacterium extorquens DM4]
 gi|254266477|emb|CAX22241.1| DNA primase [Methylobacterium extorquens DM4]
          Length = 641

 Score =  455 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 203/648 (31%), Positives = 321/648 (49%), Gaps = 41/648 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP   ++++   +P S ++G+ V   +        ++    PF+ EKTPSF+ ND K 
Sbjct: 1   MRYPPHILEEIRARVPTSEVVGRRVRLKKAGR-----EWRGLSPFNSEKTPSFYVNDQKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CFS    GD   F+    G SF E+V+RLA  AGV LP +  + E+ E+ +   + +
Sbjct: 56  FYHCFSSGKHGDIFKFVMETEGLSFPEAVERLAGEAGVTLPKMTVENEQAEERRKGALEV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  +F   L+         YLD R +     + F+LGY+   RY+LR+ L  KG   
Sbjct: 116 MELAAVYFEEQLRGQAGGEARAYLDRRALGEATRKTFRLGYSLPGRYALRDFLAGKGVDR 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++E GLL   +     YD+FR+R++FPI   RG+V+AFGGR +      KY+NSPET 
Sbjct: 176 DLMLELGLLTAPEGVNVPYDKFRDRIMFPILDIRGRVVAFGGRAMQAEAKAKYMNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A        R          I+ VEGY+DV+++  AG    V+ LGT
Sbjct: 236 LFHKGRMLYNLHAARKSAHDRSR----------IVAVEGYVDVIAMTLAGYPETVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW+ +   +LCFDGD  G RAA++A+D+ L  L PG  +   +L +G+DPD
Sbjct: 286 ALTEDQLALLWRHADEPILCFDGDGAGQRAAFRALDVALPMLEPGKSLRIAMLPQGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G +A E ++  + PLV+MLW RE E  +  TP+ RA L   L+  +  I+D+ +
Sbjct: 346 DLMRSGGPSAIEAVLSAARPLVEMLWAREAEAATLETPERRAGLARTLREAVAGIRDETV 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ---------------- 464
           R +Y   I  RL+ L     +   G             +  P Q                
Sbjct: 406 RRFYRDDIEGRLRGLSGGPASFSGGRSERAAGGRPASPRGAPFQRRPRPGDPPPSPRITT 465

Query: 465 ---RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
               L++++        + + REA ++++L+ HP +L  + + LA +   N + + L + 
Sbjct: 466 GFNPLLKTAAPVPAAGGRAAKREAMIVMSLLAHPELLGIEEEALAALELVNPDARALRTL 525

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L     E      E +  RL   G  E   +L   V     W+    A+   + Q   QA
Sbjct: 526 LLDRAAEAGTPEAELMEARLRRAGLEEAHARLLALVSSGDRWTLDPNADPQRLEQTLHQA 585

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + L+++   L  +  + E+ +A+       + +    + L +V  Q+ 
Sbjct: 586 VILHRQTGALHSELHQAERALAE-------DGSEANFAWLCDVQQQLA 626


>gi|188579855|ref|YP_001923300.1| DNA primase [Methylobacterium populi BJ001]
 gi|179343353|gb|ACB78765.1| DNA primase [Methylobacterium populi BJ001]
          Length = 642

 Score =  447 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 207/649 (31%), Positives = 322/649 (49%), Gaps = 42/649 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP   ++++   +P S ++G+ V   +        ++    PF+ EKTPSF+ ND K 
Sbjct: 1   MRYPPHILEEIRARVPASEVVGRRVRLKKAGR-----EWRGLSPFNSEKTPSFYVNDQKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CFS    GD   FL    G SF E+V+RLA+ AGV LP +  + E+ E+ +   I +
Sbjct: 56  FYHCFSSGKHGDIFKFLMETEGLSFPEAVERLASEAGVTLPKMTVESEQAEERRKGAIEV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  +F   L+         YLD R +     + F+LGY+   RY+LR+ L  KG   
Sbjct: 116 MELAAAYFEEQLRGQAGGEARAYLDRRALSEATRQKFRLGYSLPGRYALRDFLAGKGVDR 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++E GLL   +  +  YD+FR+R++FPI   RG+V+AFGGR +      KY+NSPET 
Sbjct: 176 DLMLELGLLTAPEGVSVPYDKFRDRIMFPILDIRGRVVAFGGRAMQADAKAKYMNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A        R          II VEGY+DV+++  AG    V+ LGT
Sbjct: 236 LFHKGRMLYNLHAARKSAHDRSR----------IIAVEGYVDVIAMTLAGYPETVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW+ +   +LCFDGD  G RAA++A+D+ L  L PG  +   +L +G+DPD
Sbjct: 286 ALTEDQLALLWRHADEPILCFDGDGAGQRAAFRALDVALPMLEPGKSLRIAMLPQGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G  A E ++  + PLV+MLW RE E  + +TP+ RA L   L+  +  I+D+ +
Sbjct: 346 DLMRASGPAAIEAVLSGARPLVEMLWAREAEAATLDTPERRAGLARTLREAVAGIRDETV 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS----------------- 463
           R +Y   I DRL+ L        +G         R    +G                   
Sbjct: 406 RRFYRDDIEDRLRSLSGGSGGGFAGGRSERAAGGRPPSPRGAPFQRRPRPGDPPPSPRIT 465

Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                L++++        + + REA ++++L+ HP +L  + + LA +   N +   L +
Sbjct: 466 TGFNPLLKAAAPVPTAGGRAAKREAMIVMSLLAHPELLGIEEEALAALELVNPDASALRT 525

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            L     E     PE +  RL   G  E   +L   V     W     A+   +     Q
Sbjct: 526 LLLDRAAEAGTPEPELMEARLRRAGLEEAHARLLTLVNPGDRWMLDPNADPQRLEHTLHQ 585

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           A+ L+++   L  +  + E+ +A+       + +    + L +V  Q+ 
Sbjct: 586 AVILHRQTGALHSELHQAERALAE-------DGSEANFAWLCDVQQQLA 627


>gi|254512191|ref|ZP_05124258.1| DNA primase [Rhodobacteraceae bacterium KLH11]
 gi|221535902|gb|EEE38890.1| DNA primase [Rhodobacteraceae bacterium KLH11]
          Length = 648

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 217/638 (34%), Positives = 344/638 (53%), Gaps = 22/638 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   + +S ++G+ V WD+RK+N  KGD WA CPFH EKT SFH +D KG
Sbjct: 1   MSLPPGFLDELRTRLSLSQVVGRKVMWDQRKSNQGKGDMWAPCPFHHEKTASFHVDDQKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD +SF+      SFIE+V+ LA  AG+P+P  DPK ++K+  ++ L  +
Sbjct: 61  FYYCFGCHAKGDAISFVKETENVSFIEAVEILAREAGMPMPARDPKAQEKQDRRSQLADV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF   LK         YL  RG+D+ A++ +++G+APD   +L +HLR K  +E
Sbjct: 121 MEQAVQFFRLQLKTGAGAAARDYLTRRGLDAQALDRWEIGFAPDGWQALWDHLRGKNVTE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + I+ AGL    +     YD FRNR+I+PIR  RG+ IAFGGR +   ++ KYLNSPET 
Sbjct: 181 DLILGAGLAKPSNKGKKPYDTFRNRIIYPIRDPRGRCIAFGGRAMDPNDNAKYLNSPETD 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG++LYN   A     K             +I+ EGYMDV++L +AG    V+ LGT
Sbjct: 241 LFDKGRSLYNHGPARQAAGK----------GQPLIVAEGYMDVIALAEAGFGASVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE+QL+LLW++S   ++  DGD  GLRAA +A+DL L  L  G  + F L+  G+DPD
Sbjct: 291 AITEHQLQLLWRISNEPIIALDGDTAGLRAAMRAVDLALPLLEAGKSLRFALMPEGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G  A + ++  ++P+V +LW+RETE + F++P+ +A L+  L++ I  I+D  +
Sbjct: 351 DLLRAEGPGAVQAVLEGAIPMVKLLWQRETEGKVFDSPERKAALDKSLRDKIKLIRDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R +Y Q I+D   QLF+      +       +       + P+    ++S +    +   
Sbjct: 411 RSHYGQEIKDLRWQLFRPQRQSQN----RAWQPRGKWQPQQPATPGARASFLASSENADI 466

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LREAA+L   + +P ++ +   +L ++   N +   L   +    ++    L + I Q 
Sbjct: 467 ELREAAILAIALLNPDVVVQFETQLEEMDCRNPDHSALRGAILRHAIDDPENLKDHIVQT 526

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L       LL         A +       ++   +    + LA  K  R L  +  E  +
Sbjct: 527 LGPEPLENLLA----LRHVAVIPCVYKPGDVEKAQMTLAEELAKIKALRGLDAEIAEAAE 582

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           +++ +    +   T  L     E   +  + ++++  +
Sbjct: 583 ELSDL---ADEALTYRLAQAAEE-RNRTSRSQNEDKAV 616


>gi|220927259|ref|YP_002502561.1| DNA primase [Methylobacterium nodulans ORS 2060]
 gi|219951866|gb|ACL62258.1| DNA primase [Methylobacterium nodulans ORS 2060]
          Length = 629

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 216/632 (34%), Positives = 326/632 (51%), Gaps = 25/632 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP   ++++   +P+S+++G+ V   +        ++    PF+ EKTPSF+ ND K 
Sbjct: 1   MRYPPHLLEEIRARLPLSDVVGRKVRLKKAGR-----EWRGLSPFNAEKTPSFYVNDQKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CFS    GD   FL    G SF E+V+RLAA AGV LP    +    E+ +   + +
Sbjct: 56  FYHCFSSGKHGDVFRFLQETEGLSFPEAVERLAAEAGVALPAPSRETRDSEERRRGALEV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L      R   YL  RG+       F+LGYAP  R++LR+HL  +    
Sbjct: 116 MELAAAFFESQLAGRPGGRARDYLARRGLGEAVQRDFRLGYAPGERFALRDHLAARDVPA 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + +IE GLL+ G++ A  YDRFR+R+IFPIR  RG+VIAFGGR L+     KYLNSPET 
Sbjct: 176 DLMIELGLLVGGEDIAVPYDRFRDRVIFPIRDLRGRVIAFGGRGLAPDAKPKYLNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN   A      + R          +I VEGY+DV+++   G    V+ LGT
Sbjct: 236 LFHKGSVLYNHHAARRAAHDTSR----------VIAVEGYVDVIAMTMGGHPETVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW+++   +LCFDGD  G RAAY+A+D+ L  L PG  + F LL  G+DPD
Sbjct: 286 ALTEDQLALLWRMADEPILCFDGDGAGRRAAYRALDVALPGLAPGKSLRFALLPEGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G  A ++++  + PLV++LW RETE    +TP+ RA L   L+  +  I+D+ L
Sbjct: 346 DLLRSGGAAALDRVLEAARPLVEVLWSRETEMTPVDTPERRAGLAQRLRELVGQIRDETL 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS--- 477
           R +Y   I  RL+ L              +   AR  D+    +   ++S +  + S   
Sbjct: 406 RRFYRDEIEARLRSLGPSPAARARREAAPFVPRARLTDRAASPRLTARASPLLARSSLFA 465

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              S REA ++  L+ HP +L  + ++LA++   + + + L   L     E      E +
Sbjct: 466 GGTSPREALIIGMLLVHPELLAGEVEDLAELDLASVDARALRQALIDHAAEGGIGDAEAV 525

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           + RL   G      ++   VR    W+    A+ V +    +QA+ L+++   L      
Sbjct: 526 NARLERVGLAAAAGRIAAHVRPGDRWALDPHADPVRLEDALRQAVILHRKAGSLH----- 580

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
              ++         E+T    + L +V  ++ 
Sbjct: 581 --SELRAAERALAEEETEANFAWLRDVLDRLA 610


>gi|154252763|ref|YP_001413587.1| DNA primase [Parvibaculum lavamentivorans DS-1]
 gi|154156713|gb|ABS63930.1| DNA primase [Parvibaculum lavamentivorans DS-1]
          Length = 633

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 225/651 (34%), Positives = 348/651 (53%), Gaps = 43/651 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M++P+ F+ +L   I +S ++G+ V   RR       ++    PF +EK+PSF  ND K 
Sbjct: 1   MSFPKAFLDELKGRIRVSEVVGRKVKLIRRGR-----EFVGLSPFSNEKSPSFTVNDDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F++CFS    GD + FL      SFIE+V+RLAA AG+ +P  D  + ++EK    LI +
Sbjct: 56  FFHCFSSGEHGDVIKFLEKTENLSFIEAVERLAAEAGMEMPKRDSFVAEREKEAATLIDV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD----SRYSLREHLRQK 176
           +E+A  FF   L+         YLD RG+ +  ++ F +GYAP      R +L  +L+ +
Sbjct: 116 MEMAAQFFRQKLQEGAGAEARAYLDRRGMKAKTLDDFGVGYAPGDERADRTALMRYLKSR 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
             ++E++ EAGL+I G +    +DRFRNR++FPI  +RG+VIAFGGR L+     KYLNS
Sbjct: 176 DVTQEQMAEAGLIISGPDIREPHDRFRNRVMFPIADARGRVIAFGGRALASDAKAKYLNS 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LFHKG+ LYN   A                   +I VEGYMDV+ L Q G+ N V+
Sbjct: 236 PDTPLFHKGRVLYNLNRARKPAY----------DEGTVIAVEGYMDVIGLSQGGIDNAVA 285

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            LGTALTE Q+ LLW+++P  +LCFDGD  GLRAAY+A++ VL  L PG+ + F LL  G
Sbjct: 286 PLGTALTEDQIALLWRMAPEPILCFDGDKAGLRAAYRAVERVLPLLKPGHSLRFALLPEG 345

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPD  +R  G  A   ++ ++ PL +M+W++E     ++TP+ RA+LE  L+  +  I 
Sbjct: 346 KDPDDLVREEGGQAMRDILAKARPLAEMVWEKEISAGQWDTPERRAKLEADLEAAVATIS 405

Query: 417 DQKLRYYYSQAIRDRLQQLF------------QKYITEHSGYGRYWKKNARHRDQ---KG 461
           D K+R +YS  +R ++QQ F             +       +GR +KK   +RD+     
Sbjct: 406 DPKVRGHYSDNLRAKVQQFFGGSARGGQRAGLGQNRFPRGQFGRPFKKGTFNRDRDYIPP 465

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
            +  L +S+L  G        REA LLLTL+NHP +L+   +E++ +      L +L + 
Sbjct: 466 ITPELRRSALASGGGG--ERSREALLLLTLLNHPELLENYAEEVSRVEIGTPALDRLRNE 523

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +            E +   L  R   E+ ++L+          A  +A   +   G+   
Sbjct: 524 IIDIAALHAPLEREALRNHLLSRDLAEIARRLEAGSAFKSDRFAWPDAAPDEAEAGFLHT 583

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           LA ++R  +L  + +  E+ +A+       E T    + L  +H Q+ + E
Sbjct: 584 LARHRRAIVLQAELKAAERALAE-------EMTEENFARLQAIHAQLERSE 627


>gi|83955716|ref|ZP_00964296.1| DNA primase [Sulfitobacter sp. NAS-14.1]
 gi|83840010|gb|EAP79186.1| DNA primase [Sulfitobacter sp. NAS-14.1]
          Length = 657

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 215/612 (35%), Positives = 326/612 (53%), Gaps = 17/612 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L     +S ++G+ V WD RK+N  KGD WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPPGFLDELRSRASLSQVVGRKVMWDPRKSNQGKGDMWAPCPFHQEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD +SF+      SF+E+V+ LA  AG+P+P  DP+ ++K   +T L  +
Sbjct: 61  FYYCFGCHAKGDAISFVRETENVSFMEAVEILAREAGMPMPKQDPRAQEKADKRTQLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  +F   L+ A       YL  RG+   A+E +++G+APD    L +HL+ K   +
Sbjct: 121 MELAVQYFRLQLRTAAAGAARDYLAGRGLTPQALEQWEIGFAPDQWQGLWDHLKAKNVED 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             I+ AGL          YD FR R+++PIR +RG+ IAFGGR +   ++ KYLNSPET 
Sbjct: 181 ALILGAGLAKPSSKGGRPYDTFRGRIMYPIRDARGRAIAFGGRAMDPNDNAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG++LYN   A                   +I+ EGYMDV++L QAG    V+ LGT
Sbjct: 241 LFDKGRSLYNVRDARTAA----------GQGKPLIVAEGYMDVIALVQAGFGAAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QL++LW++SP  ++  DGD  G RAA + IDL L  L  G  + F ++  G+DPD
Sbjct: 291 AITESQLQMLWRISPEPIITLDGDAAGQRAAMRLIDLALPLLEAGQSLRFAVMPDGQDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R +G  A +KL+  ++P+V +LW+RET+ R F++P+ +A L+  L+  I  IKD  +
Sbjct: 351 DLLRAHGAPALQKLLDNAMPMVRLLWQRETDGRVFDSPERKAGLDKALREKIMMIKDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEH--SGYGRYWKKNARHRDQKGPSQRLMQSSLV-KGKLS 477
           R +Y Q I+D   QLF+    +   S   R           +GPS     S LV    L 
Sbjct: 411 RSHYGQEIKDLRWQLFRPQKAKRDFSPVARASGGGKWAPAPQGPSPSAKSSILVTAAGLG 470

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
               LREA +L+ L+  P +++E    LA +R  + +  ++   +          L E+I
Sbjct: 471 ATEHLREAVILMALLGCPQLVEEFENGLAAMRCQDPDHGRIRDLMLRHVHHDPAVLREKI 530

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           +  + E     +L Q    +         +  N+   R    + L   +  R L  +  +
Sbjct: 531 YDAVGEYTLENMLSQRHVAITP----CIRSPGNLEKTRMTVAEELGKLEAVRGLDEEIAD 586

Query: 598 IEKQIAQVTAKG 609
             + +     +G
Sbjct: 587 AVEDLTGTADEG 598


>gi|260434102|ref|ZP_05788073.1| DNA primase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417930|gb|EEX11189.1| DNA primase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 650

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 226/638 (35%), Positives = 348/638 (54%), Gaps = 20/638 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   + +S ++G+ V WD RK+N  KGD WA CPFH EKT SFH +D KG
Sbjct: 1   MSLPPGFLDELRTRLSLSQVVGRKVMWDNRKSNPGKGDMWAPCPFHHEKTASFHVDDQKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD +SF+      SF+E+V+ LA  AG+P+P  DPK ++K+  +  L  +
Sbjct: 61  FYYCFGCHAKGDAISFVKETENVSFMEAVEILAREAGLPMPARDPKAQEKQDHRAQLADV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF   LK         YLD RG+D+ A++ +++G+APD   +L +HLR K  +E
Sbjct: 121 MEQAVQFFRLQLKTGAGAEARAYLDRRGLDAQALDRWEIGFAPDGWQALWDHLRGKNVAE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + I+ AGL    +     YD FRNR++FPIR  RG+ IAFGGR +   ++ KYLNSPET 
Sbjct: 181 DLILGAGLAKPSNKGKKPYDTFRNRIMFPIRDPRGRCIAFGGRAMDPNDNAKYLNSPETA 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG++LYN   A     K             +I+ EGYMDV++L +AG    V+ LGT
Sbjct: 241 LFDKGRSLYNHGPARQAAGK----------GQPLIVAEGYMDVIALSEAGFGAAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE+QL +LW++S   ++  DGD  GLRAA +AIDL L  L+ G  + F L+  G+DPD
Sbjct: 291 AITEHQLHMLWRISDEPIIALDGDTAGLRAAMRAIDLALPLLVAGKSLRFALMPEGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G  A + ++  ++P+V +LW+RETE + F++P+ +A L+  L+  I  I+D  +
Sbjct: 351 DLLRAEGPAAVQAVLDAAIPMVRLLWRRETEGKVFDSPERKAALDKALREKIQLIRDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R +Y Q I+D   QLF+          R W+   + +  K  +    ++S +    +   
Sbjct: 411 RSHYGQEIKDLRWQLFRPQRQ--GAGARNWQPKGKWQPPKPLATPDARASFLASSENADI 468

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LREAA+L T I +P ++ +   +L ++   + EL  L   +    ++    L E I + 
Sbjct: 469 RLREAAILATAILNPQVVIQFETQLEEMECLDPELAALRDVVLRHAIDDPDNLKEHIVRT 528

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L           L R    A +       ++   +    + LA  K  R L  +  E E+
Sbjct: 529 LGAAPLEN----LMRLRHVAVIPCVRKPGDVEKAQMTLAEELAKIKALRGLDAEIAEAEE 584

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           +++ VT   +   T  L     E   +  + ++++  I
Sbjct: 585 ELSDVT---DEALTFRLAQAAEE-RNRASRSQNEDRAI 618


>gi|83941157|ref|ZP_00953619.1| DNA primase [Sulfitobacter sp. EE-36]
 gi|83846977|gb|EAP84852.1| DNA primase [Sulfitobacter sp. EE-36]
          Length = 657

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 215/612 (35%), Positives = 325/612 (53%), Gaps = 17/612 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L     +S ++G+ V WD RK+N  KGD WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPPGFLDELRSRASLSQVVGRKVMWDPRKSNQGKGDMWAPCPFHQEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD +SF+      SF+E+V+ LA  AG+P+P  DP+ ++K   +T L  +
Sbjct: 61  FYYCFGCHAKGDAISFVRETENVSFMEAVEILAREAGMPMPKQDPRAQEKADKRTQLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  +F   L+ A       YL  RG+   A+E +++G+APD    L +HL+ K   +
Sbjct: 121 MELAVQYFRLQLRTAAAGAARDYLAGRGLTPQALEQWEIGFAPDQWQGLWDHLKAKNVED 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             I+ AGL          YD FR R+++PIR +RG+ IAFGGR +   ++ KYLNSPET 
Sbjct: 181 ALILGAGLAKPSSKGGRPYDTFRGRIMYPIRDARGRAIAFGGRAMDPNDNAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG++LYN   A                   +I+ EGYMDV++L QAG    V+ LGT
Sbjct: 241 LFDKGRSLYNVRDARTAA----------GQGKPLIVAEGYMDVIALVQAGFGAAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QL++LW++SP  ++  DGD  G RAA + IDL L  L  G  + F ++  G+DPD
Sbjct: 291 AITESQLQMLWRISPEPIITLDGDAAGQRAAMRLIDLALPLLEAGQSLRFAVMPDGQDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R +G  A +KL+  ++P+V +LW+RET+ R F++P+ +A L+  L+  I  IKD  +
Sbjct: 351 DLLRAHGAPALQKLLDNAMPMVRLLWQRETDGRVFDSPERKAGLDKALREKIMMIKDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEH--SGYGRYWKKNARHRDQKGPSQRLMQSSLV-KGKLS 477
           R +Y Q I+D   QLF+    +   S   R            GPS     S LV    L 
Sbjct: 411 RSHYGQEIKDLRWQLFRPQKAKRDFSPVARASGGGKWAPAPPGPSPSAKSSILVTAAGLG 470

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
               LREA +L+ L+  P +++E    LA +R  + +  ++   +          L E+I
Sbjct: 471 ATEHLREAVILMALLGCPQLVEEFETGLAAMRCQDPDHGRIRDLMLRHVHHDPAVLREKI 530

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           +  + E     +L Q    +         +  N+   R    + L   +  R L  +  +
Sbjct: 531 YDAVGEYTLENMLSQRHVAITP----CIRSPGNLEKTRMTVAEELGKLEAVRGLDEEIAD 586

Query: 598 IEKQIAQVTAKG 609
             + +     +G
Sbjct: 587 AVEDLTGTADEG 598


>gi|85705218|ref|ZP_01036317.1| DNA primase [Roseovarius sp. 217]
 gi|85670091|gb|EAQ24953.1| DNA primase [Roseovarius sp. 217]
          Length = 650

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 218/661 (32%), Positives = 327/661 (49%), Gaps = 31/661 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   + +S ++G+ V WD RK+N  KGD WA CPFH EKT SFH +D KG
Sbjct: 1   MSLPPGFLDELQSRLSLSQVVGRKVTWDNRKSNQGKGDMWAPCPFHQEKTASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD ++F+       F+E+V+ LAA AG+P+P  DP+ + K   +  LI +
Sbjct: 61  FYYCFGCHAKGDAIAFVRETENVDFMEAVKILAAEAGMPMPERDPQAQAKADRRGQLIEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  +F   L++        YL  R +       F +G+APD    L EHL  KG   
Sbjct: 121 MEQAVKYFGLQLRSGAGAAARDYLKGRNLTEATQAQFDMGFAPDGWQGLWEHLTGKGVPP 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E I+  GL  D       YD FRNR++FPIR +RG+ IAFGGR +   ++ KYLNSPET 
Sbjct: 181 EMILACGLAKDSTKGGKPYDTFRNRIMFPIRDARGRCIAFGGRAMDPNDNAKYLNSPETD 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K   LYN   A     K             +I+ EGYMDV++L  AG    V+ LGT
Sbjct: 241 LFDKSHTLYNHGPAREASGK----------GQTLIVAEGYMDVIALVAAGFGAAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE+QL+L+W++S   V+  DGD  GLRAAY+ IDL L  L  G  + F L+  G+DPD
Sbjct: 291 AVTEHQLQLMWRISSEPVIALDGDTAGLRAAYRVIDLALPLLEAGKSLRFALMPEGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G +A +  I  + P+V +LW+RETE R F++P+ +A L+  L+  I  I+D  +
Sbjct: 351 DVLRSEGASAVQAHIEGAWPMVQLLWQRETEGRDFDSPERKAALDKVLREKIMMIRDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R +Y QAI+D   QLF    +  +   R   +  +    +        S LV      + 
Sbjct: 411 RSHYGQAIKDLRWQLFNPRRSASTFTPRA--RGGKWPPPEPARAVTKSSMLVASGAGGEI 468

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LREA +L TLI  P+++      +  +   + +  +L   +       +    E + ++
Sbjct: 469 HLREAVILATLICCPSVMARFETGIEQLECRDPDHARLREIILRY----ESGDVEALREQ 524

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +        L++L      A +       +         + LA  K  R    +  E  +
Sbjct: 525 IEVEIGLGPLEKLMSLPHVALIPPVRHPGDEDLATMTLSEELAKLKAQRGWLAEVSEASQ 584

Query: 601 QI-------------AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
            I                 A+  A ++       +++     +I+  E   E F  + G+
Sbjct: 585 DIDGLADEALTWRLGQAAEARNRATRSQQEDRAEYDLGENGARIKRDE--KEQFNALLGK 642

Query: 648 L 648
           +
Sbjct: 643 I 643


>gi|255262664|ref|ZP_05342006.1| DNA primase [Thalassiobium sp. R2A62]
 gi|255104999|gb|EET47673.1| DNA primase [Thalassiobium sp. R2A62]
          Length = 649

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 215/662 (32%), Positives = 344/662 (51%), Gaps = 37/662 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   + I+ ++G+ V WD RK+N  KGD WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPDGFLDELRTRLSIAQVVGRKVIWDPRKSNQGKGDMWAPCPFHQEKSASFHVDDQKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           +YYCF CH KGD +SF+       F+E+VQ LA  AG+P+P  DP+ +KK   +T L  +
Sbjct: 61  YYYCFGCHAKGDAISFVRETENVGFMEAVQILAGEAGMPMPQRDPEAQKKADRRTQLADV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF  SLK         YL  RG +  ++E +++G+APD   +L +HL  KG S 
Sbjct: 121 MEQAVQFFRLSLKTGPASEARDYLVGRGFNDTSLERWEIGFAPDGWQNLWDHLTAKGVSP 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + +++ GL          YD FRNR++FPIR   G+ IAFGGR +   ++ KYLNSPET+
Sbjct: 181 DMMMDCGLAKPSSKGGKPYDTFRNRIMFPIRDGLGRAIAFGGRAMDPNDNAKYLNSPETV 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+NLYN   A     K             +I+ EGYMDV++L +AG    V+ LGT
Sbjct: 241 LFDKGRNLYNQKPAREAAGK----------GGDLIVAEGYMDVIALSEAGFGATVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QLRL+W+++   ++  DGD  G+RAA + ID  L  L  G  V F L+  G DPD
Sbjct: 291 AITEDQLRLMWRIAREPIIALDGDTAGMRAAMRVIDTALPMLEAGQSVRFALMPEGMDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G  A + L+ +++P+V +LW+RETE + F++P+ +A L+  L+  I  IKD  +
Sbjct: 351 DLVKGQGPGAMQALLDQAIPMVQLLWRRETEGKVFDSPERKAALDKALRAKIQEIKDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R +Y + I+    +LF+       G  +   +       +G      ++S++    + + 
Sbjct: 411 RSHYGEEIKSLRWELFR---QNRGGTAKSTYQPRGKWQPQGVPMASTKASVLGAGAAAED 467

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LRE+ +L TLI++PAIL +    L  +   ++E + +   L     +Q   L   +   
Sbjct: 468 HLRESVILATLISNPAILGQFESALERMICASSEHEAIRHALLRHVGDQPEVLRGNLVGE 527

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      + L++L  Q   A   +     +         + L      R  +R+  +  +
Sbjct: 528 LGP----DTLEKLMSQSHVAITPAVRRAGDTEIAAACVAEELDKLGAKRGHAREIADAVE 583

Query: 601 QIAQVTAKGEAEKTAILISIL-------HEVHIQIH------QIESQE-----AMIE--G 640
            ++ +  +G   + +   + +        E   +        +++  E     A+++  G
Sbjct: 584 DLSGIADEGVTWRLSQAANAINGTGRGAQEDKTEFETGENGAKMKKDERSKFDALLDQIG 643

Query: 641 FG 642
           FG
Sbjct: 644 FG 645


>gi|110679090|ref|YP_682097.1| DNA primase [Roseobacter denitrificans OCh 114]
 gi|109455206|gb|ABG31411.1| DNA primase [Roseobacter denitrificans OCh 114]
          Length = 651

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 210/635 (33%), Positives = 332/635 (52%), Gaps = 17/635 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   + ++ ++G+ V WD RK+N  KGD WA CPFH EKT SFH +D KG
Sbjct: 1   MSLPPGFLDELRTRLSLTQVVGRKVMWDARKSNQGKGDMWAPCPFHQEKTASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD +SF+       F+E+V+ LA  AG+P+P  D + ++K   +T L  +
Sbjct: 61  FYYCFGCHAKGDAISFVCETENVGFMEAVRILAQEAGMPVPERDLQAQQKADRRTQLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  +F   L          YL+ RG+ +  +E +++G+APD    L +HL+ K  ++
Sbjct: 121 MELAVKYFRLQLNTGLAAEARGYLERRGLSAQVLERWEIGFAPDQWQGLWDHLKAKSVAD 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + I+ AGL          YD FR R+++PIR +RG+ IAFGGR +   ++ KYLNSPET 
Sbjct: 181 DLILAAGLAKPSTKGGRPYDTFRGRIMYPIRDARGRAIAFGGRAMDPNDNAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG++LYN   A     K             +I+ EGYMDV++L  AG    V+ LGT
Sbjct: 241 LFDKGRSLYNQKEARTAAGK----------GQPLIVAEGYMDVIALDAAGFTAAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QL++LW+++P  ++  DGD  GLRAA + IDL L  L  G  + F ++  G+DPD
Sbjct: 291 AITENQLQMLWRIAPEPIVALDGDTAGLRAAMRLIDLALPLLEAGRSLRFAIMPAGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G  A +KL+ E+LP+V +LW+RETE   F++P+ +A LE  L++ +  IKD  +
Sbjct: 351 DLLREQGAGALQKLLDEALPMVQLLWQRETEGGVFDSPERKAALEKALRDKVALIKDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           + +Y Q ++D   QLF+    ++ G+ +  +          P Q    S+L   +     
Sbjct: 411 QNHYKQELKDLQWQLFRPQRQKNKGWRKGGRP--WGASVATPLQSTKASALASAQTIDVT 468

Query: 481 S-LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             LREA LL      P++++E   +L  +   ++  Q L   L          +   I +
Sbjct: 469 ENLREAVLLAAFATCPSVIEEFESDLERMTCSDHTHQALRDILLRHMSATAAEMRAVISE 528

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L       LL     Q   A +       ++   R    +  A     R L+ + EE  
Sbjct: 529 TLGPDALENLL----TQSHVAIVPCIRRPGDVEKTRMTVAEEFAKLSATRGLNAEIEEAS 584

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           + ++ +  +G   + +            +H+  ++
Sbjct: 585 EDMSGLADEGLTWRLSQAAKAAENARKSVHEDRAE 619


>gi|83951482|ref|ZP_00960214.1| DNA primase [Roseovarius nubinhibens ISM]
 gi|83836488|gb|EAP75785.1| DNA primase [Roseovarius nubinhibens ISM]
          Length = 648

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 207/603 (34%), Positives = 315/603 (52%), Gaps = 17/603 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L     I+ ++G+ V WD+RK+N  KGD WA CPFH EKT SFH +D KG
Sbjct: 1   MSLPPGFLDELRNRTSIAQVVGRKVMWDKRKSNPGKGDLWAPCPFHHEKTASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           +YYCF CH KGD + F+       F+E+V+ LA  AG+ LP  DP+ + K    T L  +
Sbjct: 61  YYYCFGCHAKGDAIGFVRETENVEFMEAVRILAQEAGMTLPERDPQAQAKADRITLLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  +F   L          YL  RG+ +   E F++G+ P+    L + L  +G   
Sbjct: 121 MEQAVRYFRMQLHAGAGAAAREYLARRGLSAETQERFEIGFVPEGWQGLWDTLSGQGVEA 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + I++ GL  +       YD FRNR++FPIR +RG+ IAFGGR +   ++ KYLNSPET+
Sbjct: 181 QMILDCGLARESSKGKQPYDVFRNRIMFPIRDARGRCIAFGGRAMDPNDNAKYLNSPETV 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K +NL+N   A     K             +++ EGYMDV++L QAG +  V+ LGT
Sbjct: 241 LFDKSRNLFNLGPAREAAGK----------GLPLVVAEGYMDVIALAQAGHEAAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QL +LW+++   V+  DGD  G++AAY+ IDL L  L  G  + F L+  G+DPD
Sbjct: 291 AVTETQLAMLWRVADEPVMALDGDRAGVQAAYRVIDLALPLLEAGKSLRFALMPEGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  A  + +  +LP+V++LW+RETE RSF++P+ +A L+  L+  I  I D  +
Sbjct: 351 DLIREGGIEALREKVEGALPMVELLWRRETEGRSFDSPERKAALDKVLREVIKRIADPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R +Y QAI+D   QLF              K   R + +  P      S+L+   ++ + 
Sbjct: 411 RGHYGQAIKDLRWQLFSPQRKPRQD---RGKWTPRGQMEMAPKPSTKASALLAADVAAQE 467

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LREAA+L  L+  P +  E   +L  +   +++L  L   +     + +  + E     
Sbjct: 468 RLREAAILAVLLATPEVAIEFEAQLERLECRDSDLGLLRDVILRHCDKGREAVVEAAENA 527

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L   G       L      A + +     ++   R    + LA     R ++ +  E  +
Sbjct: 528 LGGVGLEN----LTSLPHVALVPAVRRPGDVDLARVTVAEELAKIAATRGIAVEISEAME 583

Query: 601 QIA 603
            +A
Sbjct: 584 DLA 586


>gi|254465869|ref|ZP_05079280.1| DNA primase [Rhodobacterales bacterium Y4I]
 gi|206686777|gb|EDZ47259.1| DNA primase [Rhodobacterales bacterium Y4I]
          Length = 665

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 219/676 (32%), Positives = 337/676 (49%), Gaps = 44/676 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   I IS+++G+ V WD+RK+   KGDYW  CPFH EKT SFH  D KG
Sbjct: 1   MSLPPGFLDELRTRISISDVVGRKVMWDQRKSQPGKGDYWGPCPFHHEKTASFHVEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD L F+       F+E+V+ LA  AG+ +P  DP+ ++K+  +T L  +
Sbjct: 61  FYYCFGCHAKGDALKFVQETENVGFMEAVEILAGEAGMEMPKRDPRAQEKQDRRTLLADV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF   LK    +    YL  RG+ + A++ +++G+APD   +L + LR K   E
Sbjct: 121 MEQAVQFFRLQLKTNAAREAREYLQRRGLTAQALDRWEIGFAPDGWQNLWDALRGKNVPE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + II AGL    +     YD FRNR++FPIR +RG+ IAFGGR +   ++ KYLNSPET 
Sbjct: 181 DLIIGAGLAKPSNKGGKPYDTFRNRIMFPIRDARGRAIAFGGRAMDPNDNAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG++LYN   A     +           S +I+ EGYMDV++L + G Q+ V+ LGT
Sbjct: 241 LFDKGRSLYNHGPARAASGR----------GSTLIVAEGYMDVIALSEGGFQSSVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QL++LW++S   ++  DGD  GLRAA + IDL L  L  G  + F ++  G+DPD
Sbjct: 291 AITENQLQMLWRMSDEPIIALDGDTAGLRAAMRLIDLALPLLEAGKSLRFAIMPEGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  A   ++ +++P+V +LW+RETE + F++P+ +A L+  L+  I  I+D  +
Sbjct: 351 DMIRSEGPEAVRAVLDQAIPMVKLLWRRETEGKVFDSPERKAALDKSLREKIKLIRDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHS---------------GYGRYWKKNARHRDQKGPSQR 465
           R +Y + +++   QLF+                      G    WK          P   
Sbjct: 411 RKHYGEDVKEMRWQLFRGSRGSSEGGYQQRGGRGGGFRDGARAPWKPGKGFGVIPQPRAT 470

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
              S +         ++REA +L T I  PA++ +    L  ++  + +L  L   +   
Sbjct: 471 TRASLVAGADDESFAAMREAVILATAITTPAVIPDFETSLERLQCADPDLALLRDMVLRH 530

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            ++    L EEI   L       L          A +       +         + LA  
Sbjct: 531 GIDAPERLREEIDWSLGPHALENLFG----LRHVAIIPCLRKPGDTELASMTLAEELAKL 586

Query: 586 KRFRLLSRQKEEIEKQI-------------AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +  R L  +  E E+ +                 AK +A ++       ++V     ++ 
Sbjct: 587 EALRGLDAELAEAEEDLHGLADEALTWRLRQAAEAKNKAVRSENEDKATYDVGKNGARLN 646

Query: 633 SQEAMIEGFGKMSGRL 648
             E   + FG +  R+
Sbjct: 647 RDER--DAFGALLDRI 660


>gi|83309797|ref|YP_420061.1| DNA primase [Magnetospirillum magneticum AMB-1]
 gi|82944638|dbj|BAE49502.1| DNA primase [Magnetospirillum magneticum AMB-1]
          Length = 623

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 195/636 (30%), Positives = 310/636 (48%), Gaps = 33/636 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ +L   IP+++++ + V   R+       ++   CPFH+EKTPSF  N+ KG
Sbjct: 1   MAFPPQFLDELRARIPVTSVVARRVKLVRKGR-----EHQGLCPFHNEKTPSFTVNEDKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F++CF C   GD + F       SF E+V++LAA AG+ +P   P+   +E+ +  L   
Sbjct: 56  FFHCFGCGAHGDAIGFEMRAGHLSFTEAVEKLAAEAGIEVPKASPEERVREQRRASLHDA 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A+ FF   L+    +    YL  RG+    I  F+LG+APDSR +L+  L  K   E
Sbjct: 116 LEAASAFFEKHLRGPAGRDGFAYLKNRGLSDDTIARFRLGFAPDSREALKSALMSKECPE 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +IEAGLL   ++ A+ +D FR R++FPI   RG+VI FG RTL      KYLNSP+T 
Sbjct: 176 SLLIEAGLLKKPESGAS-FDYFRGRVMFPITDRRGRVIGFGARTL-GDGQPKYLNSPDTP 233

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LY    A    ++  R          +++VEGYMDV++L QAG    V+ LGT
Sbjct: 234 LFHKGQTLYGLAHAREMARELNR----------VVVVEGYMDVIALHQAGFAYAVAPLGT 283

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE Q+  LW+L+P  +LC DGD  G RA  +A++     L PG  + F  L   EDPD
Sbjct: 284 AVTEQQIEELWRLAPEPILCLDGDKAGQRAMERALERAFPILKPGQSLRFATLPAPEDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S I+  G  A   ++  + PLV++ W+  T++R  +TP+ RA LE  L +    I D+ +
Sbjct: 344 SLIKARGPAAMAAVLDAAQPLVEVAWRVATQDRPLDTPERRALLEKELSDKAFSIADETV 403

Query: 421 RYYYSQAIRDRLQQLFQKYIT---EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           RY Y    R ++++ F+          G     K   R R       +     L      
Sbjct: 404 RYQYLATFRQKIKESFRPPPRPWTNAGGGKMGGKGFGRFRPDPQAPLKGPDGMLPGVGRP 463

Query: 478 KKPSL----REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           + P      +E  +L  +++HP ++    + L +  + +  L  L   +       +   
Sbjct: 464 RPPRPNAGAQEWMMLTLVLDHPRLMDSIGERLGETTFADKTLDNLRRGILKHLGAARDLD 523

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            + +   L   G+ E+L  L     +  + +   + +  + R  ++    LY R      
Sbjct: 524 ADGLATYLRTDGYSEILDSLL-DANERRVRALRDDLSTEEARIHWEHVYNLYTR------ 576

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             +++   +++  A+     TA   S    V  Q  
Sbjct: 577 --KDLLADVSEANAELAQGPTAASWSRFEAVKKQQQ 610


>gi|170744800|ref|YP_001773455.1| DNA primase [Methylobacterium sp. 4-46]
 gi|168199074|gb|ACA21021.1| DNA primase [Methylobacterium sp. 4-46]
          Length = 627

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 212/633 (33%), Positives = 316/633 (49%), Gaps = 27/633 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP   ++++   +P S+++G+ V   +        ++    PF+ EKTPSF+ ND K 
Sbjct: 1   MRYPPHLLEEIRARLPASDVVGRKVRLKKAGR-----EWRGLSPFNAEKTPSFYVNDQKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F++CFS    GD  +FL    G SF E+V+RLAA AGV LP    +    E+ +   + +
Sbjct: 56  FFHCFSSGKHGDIFTFLQETEGLSFPEAVERLAAEAGVALPAPSRESRDSEERRRGGLEV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L      R   YL  RG+       F+LGYAP  RY+LR+HL  +    
Sbjct: 116 MELAAAFFEAQLAGRGGARARDYLARRGLSDAVQREFRLGYAPAERYALRDHLAARDVPA 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E +IE GL+  G++ A  YD FR+R+IFPIR  RG+VIAFGGR L+     KYLNSPET 
Sbjct: 176 ELMIELGLIKGGEDVAVPYDHFRDRIIFPIRDLRGRVIAFGGRALAPEAKPKYLNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN   A      + R          +I VEGY+DV+++   G    V+ LGT
Sbjct: 236 LFHKGTVLYNHHAARRAAHDTGR----------VIAVEGYVDVIAMTMGGHPETVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL L+W+++   +LCFDGD  G RAAY+A+D+ L  L PG  + F LL  G+DPD
Sbjct: 286 ALTEDQLGLMWRMADEPILCFDGDGAGRRAAYRALDVALPGLAPGKSLRFALLPEGQDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G  A ++++  + PLV++LW RETE    +TP+ RA L   L+  +  I+D+ L
Sbjct: 346 DLLRAGGAVALDRVLEGARPLVEVLWSRETEMAPVDTPERRAGLAQRLRELVGQIRDETL 405

Query: 421 RYYYSQAIRDRLQQLFQKY----ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           R YY   I  RL+            + +       +    R             L +  L
Sbjct: 406 RRYYRDEIEARLRAFGPAPAGGGRRDAAPAFARRGRGQPERPASPRLTARASPLLARSSL 465

Query: 477 SK-KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                S REA ++  L+ HP +L  + ++LA +   + + + L   L     E       
Sbjct: 466 FAGGTSSREALIIGVLVVHPELLAGEAEDLAALDLASADARDLRQALLDHAAEGGPGDAA 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            ++ RL   G      ++   VR    W+    A+ V +    +QA+ L++R   L    
Sbjct: 526 ALNTRLERAGLAAAAGRIAAHVRPGDRWALDPHADPVRLEDALRQAVILHRRAGSLH--- 582

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                ++         E+T    + L +V  ++
Sbjct: 583 ----SELRAAERALAEEETEANFAWLRDVKERL 611


>gi|149202117|ref|ZP_01879090.1| DNA primase [Roseovarius sp. TM1035]
 gi|149144215|gb|EDM32246.1| DNA primase [Roseovarius sp. TM1035]
          Length = 649

 Score =  425 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 214/602 (35%), Positives = 305/602 (50%), Gaps = 17/602 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   + +S+++G+ V WD RK+N  KGD WA CPFH EKT SFH +D KG
Sbjct: 1   MSLPPGFLDELQNRLSLSHVVGRKVTWDNRKSNPGKGDMWAPCPFHQEKTASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD ++F+       F+E+V+ LAA AG+P+P  DP+ + K   +  LI +
Sbjct: 61  FYYCFGCHAKGDAIAFVRETENVDFMEAVKILAAEAGMPMPERDPQAQAKADRRGQLIEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF   L++        YL  R +       F +G+APD    L EHL  KG   
Sbjct: 121 MEQAVKFFGLHLRSGAGAAARDYLKGRKLAEATQAQFDIGFAPDGWQGLWEHLTGKGVPP 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + I+  GL  +       YD FRNR++FPIR +RG+ IAFGGR +   +  KYLNSPET 
Sbjct: 181 DMILACGLAKESQKGGKPYDTFRNRIMFPIRDARGRCIAFGGRAMDPSDPAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K   LYN   A     K             +I+ EGYMDV++L  AG    V+ LGT
Sbjct: 241 LFDKSHTLYNHGPAREASGK----------GQTLIVAEGYMDVIALVAAGFGAAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE+QL+L+W++SP  V+  DGD  GLRAAY+ IDL L  L  G  + F L+  G+DPD
Sbjct: 291 AVTEHQLQLMWRISPEPVIALDGDTAGLRAAYRVIDLALPLLEAGKSLRFALMPEGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G  A +  I  +LP+V +LW+RETE R +++P+ RA L+  L+  I  I+D  +
Sbjct: 351 DLLRSEGAGAVQGRIDAALPMVQLLWQRETEGRDYDSPERRAALDKVLREKIMLIRDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R +Y QAI+D   QLF       S       +  +    +        S LV        
Sbjct: 411 RSHYGQAIKDLRWQLFNP---RRSTGFTPRARGGKWPPPEPARAATKSSLLVAAGGDGTV 467

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LREA +L TLI+ P++       L  +   + +L +L   +    V       E +  R
Sbjct: 468 HLREAVVLATLISCPSVAARFEAGLERLECRDPDLARLRDLILRHAVSG----AEGLRAR 523

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +        L++L      A +       +         +  A     R    +  E  +
Sbjct: 524 IEAEIGSAPLEKLMTLPHVALIPPVRRPGDEELAILTLTEEFAKLTAQRGWMAELSEATE 583

Query: 601 QI 602
            I
Sbjct: 584 DI 585


>gi|126738767|ref|ZP_01754463.1| DNA primase [Roseobacter sp. SK209-2-6]
 gi|126719948|gb|EBA16655.1| DNA primase [Roseobacter sp. SK209-2-6]
          Length = 672

 Score =  425 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 216/683 (31%), Positives = 345/683 (50%), Gaps = 51/683 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   I IS+++G+ V WD+RK+   KGDYW+ CPFH EKT SFH  D KG
Sbjct: 1   MSLPPGFLDELRTRISISDVVGRKVMWDQRKSQPGKGDYWSPCPFHHEKTASFHVEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD L F+      SF+E+V+ LA  AG+ +P  DP+ ++K+  +T L  +
Sbjct: 61  FYYCFGCHAKGDALKFVQETENVSFMEAVEILAGEAGMEMPKRDPRAQEKQDRRTLLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF   LK         YL  RG+   A++ +++G+APD   +L + LR K   E
Sbjct: 121 MEQAVQFFRLQLKTGAAGPARDYLQRRGLTPPALDRWEIGFAPDGWQNLWDALRAKNVPE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + II AGL    +     YD FRNR++FPIR +RG+ IAFGGR +   ++ KYLNSPET 
Sbjct: 181 DLIIAAGLAKPSNKGGKPYDTFRNRIMFPIRDARGRAIAFGGRAMDPNDNAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+NLYN   A     +           S +++ EGYMDV++L + G  + V+ LGT
Sbjct: 241 LFDKGRNLYNHGPARAASGR----------GSQLVVAEGYMDVIALSEGGFTSSVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QL+++W++S   ++  DGD  G+RAA + +DL L HL  G  + F L+  G+DPD
Sbjct: 291 AVTENQLQMMWRMSDEPIIALDGDKAGIRAAMRLVDLALPHLQAGKSLRFALMPDGQDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  A + ++ +++P+V +LW+RETE + F++P+ +A L+  L++ I  I+D  +
Sbjct: 351 DLIRSKGPAAVQAVLDQAMPMVKLLWQRETEGKVFDSPERKAALDKALRDKIRLIRDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYG----------------------RYWKKNARHRD 458
           R +Y + I++    LF+      +G                           +       
Sbjct: 411 RKHYGEDIKEMRWTLFRGNRPPGAGGYDGTEGKPGSYKGGNYKGGGFRDGARRPWKGQAA 470

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
            + P      S +     S+   +REA +L   I+ P I+ E    L  +   +  L  L
Sbjct: 471 AQAPLSTTRSSLVAAADESELARVREAVVLAVAISCPWIIVEFEVNLERMTCADGALAAL 530

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
              +    V+     PE++ +R+CE    + L+ L      A +       ++   R   
Sbjct: 531 RDQVLRHGVDA----PEQLKERICETLGSQALENLMSLRHVAIIPCLRRPEDLEAARLTL 586

Query: 579 QQALALYKRFRLLSRQKEEIEK------------QIAQVTAKGEAE-KTAILISILHEVH 625
            +  A  +  R L+ +  E E+            ++ +         ++       ++V 
Sbjct: 587 AEEFAKLEALRGLNAELAEAEEDLSGLADEALTWRLKEAAEARNRAVRSENEDKATYDVG 646

Query: 626 IQIHQIESQEAMIEGFGKMSGRL 648
               ++  +E   + FG +  R+
Sbjct: 647 ENGARLSREER--DAFGALLDRI 667


>gi|302382121|ref|YP_003817944.1| DNA primase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192749|gb|ADL00321.1| DNA primase [Brevundimonas subvibrioides ATCC 15264]
          Length = 623

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 193/630 (30%), Positives = 303/630 (48%), Gaps = 19/630 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+++L   +  S++IG+ V   R+       ++    PF  EK+PSF  ND KG
Sbjct: 1   MRFDDRFLEELKARLRPSDVIGRSVKLKRQGR-----EWVGLSPFSKEKSPSFFVNDDKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F++ FS    GD +SFL      SF E+V+RLAA AG+ LP  DP+  ++E  +  L   
Sbjct: 56  FFHDFSSGKHGDVISFLQETERLSFPEAVERLAAEAGMQLPAEDPQAAEREAKKQGLSDW 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +++A  +F  +L+ +  K    YL+ RG+     E F LGYAP+ R  L+  L Q+G   
Sbjct: 116 MDLAQKWFAANLRRSTGKAAREYLERRGLPEDQWERFGLGYAPNDREGLKSALVQRGAKP 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             ++E G+LI  +     YDRFR+RL+FPI  +RG++++FGGR ++  +  KYLN PE+ 
Sbjct: 176 GDLVEMGMLISPEGGGAPYDRFRDRLMFPILDARGRLVSFGGRAMNPDDRAKYLNGPESP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LY    A   L           S+  +I+VEGYMDV++  +AG+   V+ +GT
Sbjct: 236 LFHKGATLYGLPEARRIL------GAESKSTQSVIVVEGYMDVIACQRAGLP-AVAPMGT 288

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+ LLW++S   +LCFDGD  G RAAY+AI+  L  L  G    F LL  G+DPD
Sbjct: 289 ALTEDQMALLWRVSSEPILCFDGDGAGQRAAYRAIERALPLLKSGRSFRFALLEGGQDPD 348

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G  A  + + E+ P  ++L+KRE E    +TP+ RA L+  L+     I D+ L
Sbjct: 349 DILRDKGAPALRQAMTETRPFAEVLFKREAEVEPLDTPERRAGLKGRLRTAAGAIADKDL 408

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ-RLMQSSLVKGKLSKK 479
              Y + + +R   LF           R  +   R R    P   +  + +     L++ 
Sbjct: 409 AEQYRRELFERFDALFPSRAQAPQ---RPQQSGGRWRPGPPPKLGQTAEGAQAMQALNRS 465

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                AAL    I  P  + +  + +A   + +  L  L   L       +      + +
Sbjct: 466 IEPVAAALAHGAIEDPERMDDHLEAIASHGFGDPALDGLAQELVRLRFGGQTLDSAALRR 525

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L   G   L++++++    +G       A + + R  + Q      R   L       +
Sbjct: 526 HLASSGHDALVREVEKAAAKSGAPFLAANAPLAEARVRWSQGFDALTRVAGLDAALASAK 585

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                     +A   + L +    +   I 
Sbjct: 586 S---GADHVFDASAFSRLKAERDALRRAIK 612


>gi|260425557|ref|ZP_05779537.1| DNA primase [Citreicella sp. SE45]
 gi|260423497|gb|EEX16747.1| DNA primase [Citreicella sp. SE45]
          Length = 650

 Score =  423 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 217/626 (34%), Positives = 327/626 (52%), Gaps = 16/626 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L     +S ++G+ V WD RK+N  KGD WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPPGFLDELRNRTSLSQVVGRKVMWDNRKSNQAKGDMWAPCPFHQEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF C  KGD +SF+       F+E+V+ LA  AG+P+P  DP+  K+   ++ L  +
Sbjct: 61  FYYCFGCQAKGDAISFIRESENVEFMEAVEILAREAGMPMPARDPQAAKQADRRSQLSEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  +F   L++        YLD RG+D    + F+LG+AP+   +L +HLR +G +E
Sbjct: 121 MEQAVRWFRMQLRSGGATAARAYLDRRGLDESVRDRFELGFAPEGWQNLWDHLRGQGVAE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E I+ AGL    D     YD FRNR++FPIR  RG+ IAFGGR +   ++ KYLNSPET 
Sbjct: 181 ELILGAGLAKPSDRGRAPYDVFRNRIMFPIRDGRGRAIAFGGRAMDPNDNAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+NLYN   A     K             +I+ EGYMDV++L +AG    V+ LGT
Sbjct: 241 LFDKGRNLYNHAPAREAAGK----------GQPLIVAEGYMDVIALSEAGFGASVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QL+LLW++S   ++  DGD  GLRAAY+ IDL L  L  G  + F L+  G+DPD
Sbjct: 291 AVTETQLQLLWRISDEPIVALDGDKAGLRAAYRVIDLALPLLQAGKSLRFALMPEGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G  A  +++ +++P+V +LW+RETE +SF++P+ +A L+  L+  I  ++DQ L
Sbjct: 351 DLLRAEGPAAVARVLEQAMPMVQLLWRRETEGKSFDSPERKAALDARLREVIKTVQDQGL 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R +Y   I+D   QLF+       G G+   K A       PS  +  S LV    + + 
Sbjct: 411 RRHYGDEIKDLRWQLFRAQRQPRGGSGKGAAKRA-WNAPAPPSASVRSSLLVSVGEAGET 469

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LREA +L  L+++P+ L E    +  +   + +   L + L      +   + + +   
Sbjct: 470 RLREAVILAVLLSYPSFLTEFEHRIEAMACGDADHAMLRNALLRCMDAEPERVRDMVADA 529

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +        L       R   +       +    R      L   +     S +  E E 
Sbjct: 530 IGPEALESFLA-----ARHLMIVPCLRRQDPEFARMTIIDYLDRIEAAAGRSLEIHEAEA 584

Query: 601 QIAQVTAKGEAEKTAILISILHEVHI 626
            + ++  +   E+  +       V  
Sbjct: 585 DMHELADEVVTERLKLANETYDRVQR 610


>gi|16127279|ref|NP_421843.1| DNA primase [Caulobacter crescentus CB15]
 gi|221236080|ref|YP_002518517.1| DNA primase [Caulobacter crescentus NA1000]
 gi|13424695|gb|AAK25011.1| DNA primase [Caulobacter crescentus CB15]
 gi|220965253|gb|ACL96609.1| DNA primase [Caulobacter crescentus NA1000]
          Length = 643

 Score =  423 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 200/641 (31%), Positives = 325/641 (50%), Gaps = 25/641 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+++L   +  S+++G+ V   R+       +Y    PF  EK+PSF  ND KG
Sbjct: 1   MRFDDRFLEELKSRLRPSDVVGKTVKLRRQGR-----EYAGLSPFTKEKSPSFFVNDEKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CFS    GD +SFL      +F E+V+RLAA AG+ LP VDP+  ++E+ ++ L   
Sbjct: 56  FYHCFSSGKHGDIISFLQETERLTFAEAVERLAAEAGMSLPEVDPRAAREEQKRSSLGDW 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  +F   L+    +    YL++RG+       F++G+AP++R  L+++L  KG   
Sbjct: 116 MELAAAWFESELRRPVGQTARAYLEKRGLPESEWSRFRIGFAPNNRTGLKDYLIAKGAKP 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +++AG+LI  ++    YDRFR+R+IFPI  SRG+V++FGGR +      KYLN PET 
Sbjct: 176 GDLVDAGVLIAPEDGGAPYDRFRDRIIFPIADSRGKVVSFGGRAMDPAARAKYLNGPETS 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LY  F A   L               +++VEGYMDV++  +AGV   V+++GT
Sbjct: 236 LFHKGRVLYGLFEARKILH----AGQSGGEKPPMVVVEGYMDVIACQRAGVP-AVAAMGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+  LW+L P   LCFDGD  G RAA +AID  L  L PG    F +   G+DPD
Sbjct: 291 ALTEEQMEGLWRLHPTPTLCFDGDKAGKRAADRAIDRALPLLKPGRSFLFSMPVGGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G  A +  + ++ P V  L++RE E   F+TP++R  L++ L+     I D+ L
Sbjct: 351 DVLREQGPAALKAQVSDTKPFVQALFEREKEVEPFDTPEQRTNLKVRLRTLAATIADKDL 410

Query: 421 RYYYSQAIRDRLQQL--FQKYITEHSGYGRYWKKNARHRDQKGPSQRL------MQSSLV 472
            + Y + + DRL ++   ++   + S  GR   +       + P  +        +    
Sbjct: 411 AHAYKEELLDRLDEMRAARRVKADASDAGRALSRQRWDNSPRRPWGKPRLEGATAEGRQA 470

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
              L + P    AALL+  I  P ++ ++ + L +  + +  L  +   L +  +E  + 
Sbjct: 471 AAALHQAPRPFSAALLIAAIRDPKVVDDRIEVLMNQGFGDERLDAIAHELVNLRLEADHV 530

Query: 533 LPEEIHQRLCERGFGE----LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
               +  RL   G+ E     L++    V+   +  +  ++    +R  + QA  L  R 
Sbjct: 531 ETGLLRGRLASAGYDEGVLAALERAAAHVKALDVAQSAAQSPQEAIRVLWSQAFDLLLRL 590

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             L R  ++ +  +A      + +    L +    V   I 
Sbjct: 591 TALERAVDDAKTDLAD---DSDFQTLLRLKTERDAVKRLIE 628


>gi|254440883|ref|ZP_05054376.1| DNA primase catalytic core, N-terminal domain family
           [Octadecabacter antarcticus 307]
 gi|198250961|gb|EDY75276.1| DNA primase catalytic core, N-terminal domain family
           [Octadecabacter antarcticus 307]
          Length = 654

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 208/621 (33%), Positives = 328/621 (52%), Gaps = 15/621 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   + I  ++G+ V WD+RK+N  KGD WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPPGFLDELRTRLSIGQVVGRKVMWDQRKSNQGKGDLWAPCPFHQEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           +YYCF CH KGD +SF+       F+E+V+ LA  AG+P+P  DP+ + K   +T L  +
Sbjct: 61  YYYCFGCHAKGDAISFVRETENVGFMEAVEILAVEAGMPVPKRDPQAQAKSDRRTLLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  F+   LK         YL  RG+ + A+E +++G AP    +L +HL  KG +E
Sbjct: 121 MEQAVQFYRLQLKTGAGAEARDYLVGRGLSAAALERWEIGLAPQGWQNLWDHLTGKGVAE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + I+ AGL    ++    YD FR+R++FPIR +RG+ IAFGGR +   ++ KYLNSPET 
Sbjct: 181 DLILGAGLGKPSNSGKKPYDTFRHRIMFPIRDARGRAIAFGGRAMDPSDNAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG++L+NF  A     K             +++ EGYMDV++L +AG    V+ LGT
Sbjct: 241 LFDKGRSLFNFGPAREAAGK----------GLPLLVAEGYMDVIALVEAGFGAAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QL+++W+++P  V+  DGD  G RAA + IDL L  L  G  V F ++  G+DPD
Sbjct: 291 AVTETQLQMMWRIAPEPVITLDGDVAGQRAAMRVIDLALPLLEAGQSVRFAMMPDGQDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G  A  + +  +LP+V +LW+RE E ++F++P+ +A L+  L+  I  IKD  +
Sbjct: 351 DLLKSAGAGAMRERVDGALPMVQLLWQREVEGKNFDSPERKAALDKSLREKIMLIKDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR-HRDQKGPSQRLMQSSLVKGKLSKK 479
           R +Y QAI+D   +LF        G     ++     +  K P+Q   ++SL+ G  S +
Sbjct: 411 RSHYGQAIKDMRWELFGNNRKAFGGGSTGQQRGKWLPKGAKLPAQMSTKASLLGGGPSSE 470

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-IH 538
             LREA +L  LI +P IL +    L  +     ++  L   L            E  + 
Sbjct: 471 DHLREAVILAVLIRNPLILVDFNGALERMICSGPDIAMLRDALLKV---DPQADLEAVLS 527

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +    +L  Q    +  A       +   + + + + +  A       +    EE+
Sbjct: 528 AEIGDGPLVKLFAQAHVTITPAVRRPDNGDLARMCLAEEFAKLTARRGHANEVQDAVEEM 587

Query: 599 EKQIAQVTAKGEAEKTAILIS 619
              +A         ++   ++
Sbjct: 588 NSDVADERLTTRLAQSIAAMN 608


>gi|163796953|ref|ZP_02190909.1| DNA primase [alpha proteobacterium BAL199]
 gi|159177700|gb|EDP62251.1| DNA primase [alpha proteobacterium BAL199]
          Length = 616

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 187/625 (29%), Positives = 308/625 (49%), Gaps = 20/625 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+ F+ +L   + +S+++G+     R+       ++ + CPFH +  PS +  D KG
Sbjct: 1   MALPQGFLDELRDRVSVSSMVGRRHALIRKGR-----EFVSLCPFHSDSKPSLNIVDDKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF+C   GD + F+    G  F+E++++LA +AG+ +P   P+  ++ +    L  +
Sbjct: 56  FYHCFACGAHGDVIKFVMETEGLGFMEAIEQLAGVAGLEVPKETPEERQRAERTRSLQEV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +++A  ++   L+ +       YL ERG+    I  F+LG+AP+ R +L+  ++ +G   
Sbjct: 116 VDLACRWYERQLRTSIGDAGLRYLRERGLSEETIARFRLGWAPEDRKALQRAMKAEGVEV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++EAGL +   +   + D  R R++FPI   RG+VIAFGGR L      KYLNSP+T 
Sbjct: 176 DILVEAGL-VKRYDDGETGDYMRGRVLFPITDRRGKVIAFGGRVL-GDGQPKYLNSPDTP 233

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LY    A     K          S  +++ EGYMDV++L Q G+   V+ LGT
Sbjct: 234 LFHKGRVLYGLAQAREAAHK----------SGTLVVTEGYMDVIALAQVGIP-SVAPLGT 282

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+  LWK+ P  V+CFDGD  G RAA +A D  L  L PG+ + F++L  GEDPD
Sbjct: 283 ALTEDQIAELWKVVPEPVVCFDGDTAGQRAATRACDRALPMLTPGHSLRFIVLPEGEDPD 342

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S  R  G + F +L+  + P+VD LW  E  +   +TP+ RA+    ++  I  I D+ +
Sbjct: 343 SLTRRDGPSGFRRLLDAAEPMVDRLWTAEATSGPVDTPERRADFWRRVRERIRVIADRTV 402

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  YS  I  R++ +         G G   +   +      P      S   + ++    
Sbjct: 403 QQSYSDEIETRIEAMRPSRQNRSDGRGSAGRGTFKGGKWTPPPVEPPGSRASRARVDTAL 462

Query: 481 SLREAA-LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             R+   +L T+I+HP +L E  + LA +   +  L KL   +              +  
Sbjct: 463 GQRQQQIILATVIHHPGLLDELGETLAHLELGDQFLDKLRREILEITEADPDLDAAGLTD 522

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L   G+ + +  L      +    A   A   + R G  + +A   R R L RQ  E  
Sbjct: 523 HLKALGYSDTVNGLLGADSLSHAAFARPSATHSEARAGLIELVARVGRGR-LERQLAEAR 581

Query: 600 KQIAQVTAKGEAEKTAILISILHEV 624
           +   +   + + ++   L   L ++
Sbjct: 582 RIAEESMTEADMDRMMGLRKALQQI 606


>gi|89055940|ref|YP_511391.1| DNA primase [Jannaschia sp. CCS1]
 gi|88865489|gb|ABD56366.1| DNA primase [Jannaschia sp. CCS1]
          Length = 646

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 202/645 (31%), Positives = 312/645 (48%), Gaps = 20/645 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L     I+ ++G+ V WD RK+N  KGD WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPPGFLDELRTRTSIAQVVGRKVIWDNRKSNQAKGDMWAPCPFHQEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF C  KGD   F+       F+E+VQ LA  AG+ +P  DP+ ++K    T L ++
Sbjct: 61  FYYCFGCQAKGDMFKFVQETENVGFMEAVQILAGEAGMQMPARDPQAQEKADKATQLAKV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A   F   LK         YL+ RG+D   ++ F++G+AP+ R S  + L  KGF+ 
Sbjct: 121 TEAAVQHFRLQLKTQAASDARAYLEGRGMDQATLDRFEIGFAPNGRNSTHQALVDKGFAV 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + I  A +    D+    YD FR+R+IFPIR +RG+ + FGGR +      KYLNS ET 
Sbjct: 181 DDITAANVSTKPDDGGAPYDAFRDRIIFPIRDARGRCLGFGGRAMDPNARAKYLNSRETP 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+ LYN   A     K             +I+ EGYMDV++L  AG +  V+ LGT
Sbjct: 241 LFDKGRALYNHGPAREAAGK----------GQPLIVAEGYMDVIALVGAGFEAAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QLRL+W+++   ++  DGD  GLRAA + +DL +  L  G  + FV+L  G+DPD
Sbjct: 291 AVTEDQLRLMWRITDEPIIALDGDKAGLRAAMRLVDLAMPLLEGGKSLRFVILPEGQDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  A + L+ ++ P+V +LW+RETE + F++P+ R+ L+  L+  +  I D  L
Sbjct: 351 DLIRAQGPGAMQALLDKAEPMVTLLWRRETEGQVFDSPERRSALDGRLRQALQRIGDPGL 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R +Y  AI +  + LF+          R   K     + + P    + ++  +       
Sbjct: 411 RRHYGDAISELRRALFRPQQKPWQPGKRGPWKGRGFAEAQAP----LAATRARVGALSGE 466

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +LR   ++ T I  P ++     +L  +   + +  +L + L       +      +   
Sbjct: 467 TLRTGLIVATCIRFPDLIDVFEPQLDRMNPRDPDHARLTAHLLRT----QNREAATLLDE 522

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +        L+ L R    A         +        ++  A     R +  +  E  +
Sbjct: 523 INASPLAPALESLLRLSHLAITPFLIGAGDRARAEDCLEEEFARLTAARAIEDEMVEASQ 582

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
            +     +G+      +   L        Q    E   E FG+ S
Sbjct: 583 DVEAAPDEGDPALAYRMKEALRG--KHAAQSPKGEDNAEQFGETS 625


>gi|114764809|ref|ZP_01443991.1| DNA primase [Pelagibaca bermudensis HTCC2601]
 gi|114542695|gb|EAU45718.1| DNA primase [Roseovarius sp. HTCC2601]
          Length = 653

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 213/631 (33%), Positives = 321/631 (50%), Gaps = 26/631 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L     +  ++G+ V WD RK+N  KGD WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPPGFLDELRNRTSLVQVVGRKVMWDNRKSNQAKGDMWAPCPFHQEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD +SF+       F+E+++ LA  AG+P+P  DP+  KK   +  L  +
Sbjct: 61  FYYCFGCHAKGDAISFVRESENVEFMEAIEILAREAGMPMPARDPQAAKKADRREQLSEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF   L+         YLD RG+     + F++G+AP+   +L +HLR +G +E
Sbjct: 121 MEQAVRFFRMQLRAGAATEARAYLDRRGLKEDVRDRFEIGFAPEGWQNLWDHLRGQGVAE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + I+ AGL    D     YD FRNR++FPIR +RG+ IAFGGR +   ++ KYLNSPET 
Sbjct: 181 DLILGAGLAKASDRGKAPYDVFRNRIMFPIRDARGRAIAFGGRAMDPRDNAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+NLYN   A     K             +I+ EGYMDV++L +AG    V+ LGT
Sbjct: 241 LFDKGRNLYNHAPAREAAGK----------GQPLIVAEGYMDVIALSEAGFGASVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE Q++LLW+++   ++  DGD  GLRAAY+ IDL L  L  G  + F L+  G+DPD
Sbjct: 291 AVTETQMQLLWRITDEPIVALDGDKAGLRAAYRVIDLALPLLQAGKTLRFALMPEGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G  A  K++  ++P+V +LW+RETE + F++P+ +A L+  L++ +  I+D  L
Sbjct: 351 DLLRAEGAGAVSKVLEGAMPMVQLLWRRETEGKVFDSPERKAALDARLRDVLRQIQDPGL 410

Query: 421 RYYYSQAIRDRLQQLFQKYITE-HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           R +Y   I++   QLF+    +   G G              PS  +  S LV    + +
Sbjct: 411 RRHYGDEIKELRFQLFRPQRPKRAFGGGGAGGPRRAWNAPAPPSASVKSSLLVAAGDTAE 470

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             LREA +L  L++ P ++ E  Q L  +   +     L   L  +  +    L EE   
Sbjct: 471 NELREAVILAVLLSTPELIAEFEQGLEMLNCTDPVRASLRDVLLRNNADSAAALREEAEY 530

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL--------------- 584
           R+       LL      V          E   + V +   +  A                
Sbjct: 531 RIGPEPLENLLAARHVAVVPCVRRPGDIELARMTVAEELSKITARSGAAAEIAEAEEDLE 590

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           +     L+ +  +  K   +   + +  +  
Sbjct: 591 HLADEALTWRLAQAAKARNEAVLRKDEGEMD 621


>gi|254459667|ref|ZP_05073083.1| DNA primase [Rhodobacterales bacterium HTCC2083]
 gi|206676256|gb|EDZ40743.1| DNA primase [Rhodobacteraceae bacterium HTCC2083]
          Length = 654

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 206/605 (34%), Positives = 318/605 (52%), Gaps = 17/605 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   + +S ++G+ V WD RK+N  KGD WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPPGFLDELRTRLSLSQVVGRKVMWDSRKSNQGKGDMWAPCPFHQEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF C  KGD +SF+       F+E+++ LA  AG+ +P  DP+ ++K   +T+L+ +
Sbjct: 61  FYYCFGCQAKGDAISFVRETENVGFMEAIEILAGEAGLEVPKQDPRAQQKADERTELVDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF   L+         YLD RG+     E F++G+APD+   L +HL  KG S 
Sbjct: 121 MEQAVQFFRLQLRTGNASEARGYLDRRGLKEATQERFEIGFAPDAWQGLWDHLSGKGVSA 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           EKI+ AGL          YD FRNR+IFPIR +RG+  AFGGR +   ++ KYLNSPET+
Sbjct: 181 EKILAAGLAKPSSKGGKPYDTFRNRIIFPIRDARGRCTAFGGRAMDPNDNAKYLNSPETL 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG++LYN   A     K           + +I+ EGYMDV++L + G    V+ LGT
Sbjct: 241 LFDKGRSLYNHGPAREAAGK----------GAPLIVAEGYMDVIALAEGGFGACVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+T+ QL LLW++S   ++  DGD  GLRAA + IDL L  L  G  + F L+  G+DPD
Sbjct: 291 AITDNQLHLLWRISDEPIIALDGDTAGLRAAQRLIDLALPLLEAGKSLRFALMPEGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  A +++I  ++P+V +LW +E E ++F++P+ +A L+  L+  +  I+D  +
Sbjct: 351 DLIRAEGPEAVQRVIDGAMPMVQLLWDKEIEGKNFDSPERKAALDKTLREKLMLIRDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQK---YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           R +Y QAI+D   QLF+      +    + +  + + R+      +     S L      
Sbjct: 411 RSHYGQAIKDMRWQLFRAGSGGSSSKKPWAKGKRGDWRNPPPAPATASAKASLLAGAGED 470

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            +  +REA ++ +LI  P ++ E   +L ++     E +     +          L E+I
Sbjct: 471 TQRQMREAVIIASLICTPDVVAEFEGQLEELHVSTQEHRAFLDLILVHSSHGPEVLREKI 530

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                      LL      +          E  ++       + LA  +  + LS +  E
Sbjct: 531 VDARGTDSLENLLGAGHVAITPCVRRPGDIEMAMM----AISEELAKLEAEQGLSAEVAE 586

Query: 598 IEKQI 602
             + +
Sbjct: 587 AAEDL 591


>gi|295690892|ref|YP_003594585.1| DNA primase [Caulobacter segnis ATCC 21756]
 gi|295432795|gb|ADG11967.1| DNA primase [Caulobacter segnis ATCC 21756]
          Length = 642

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 200/637 (31%), Positives = 329/637 (51%), Gaps = 24/637 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+++L   +  S+++G+ V   R+       +Y    PF  EK+PSF  ND KG
Sbjct: 1   MRFDDRFLEELKSRLRPSDVVGKTVKLRRQGR-----EYAGLSPFTKEKSPSFFVNDEKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CFS    GD +SFL      +F E+V+RLAA AG+ LP VDP+  ++E+ ++ L   
Sbjct: 56  FYHCFSSGKHGDIISFLQETERLTFAEAVERLAAEAGMSLPEVDPRAAREEQKRSSLGDW 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  +F   L+    +    YL++RG+       F++G+AP++R  L+++L  KG   
Sbjct: 116 MELAAAWFESELRRPVGQAARAYLEKRGLPESEWSRFRIGFAPNNRTGLKDYLIAKGAKP 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +++AG+LI  ++    YDRFR+R+IFPI  SRG+V++FGGR +      KYLN PET 
Sbjct: 176 GDLVDAGVLIAPEDGGQPYDRFRDRIIFPIADSRGKVVSFGGRAMDPAARAKYLNGPETS 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LY  F A   L               +++VEGYMDV++  +AG+   V+++GT
Sbjct: 236 LFHKGRVLYGLFEARKILH----AGQSGGEKPPMVVVEGYMDVIACQRAGIP-AVAAMGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+  LW+L P   LCFDGD  G RAA +AID  L  L PG    F +   G+DPD
Sbjct: 291 ALTEEQMEGLWRLHPTPTLCFDGDKAGRRAADRAIDRALPLLKPGRSFLFSMPVGGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G  A +  I  + P V+ L++RE E   F+TP++R  L++ L+     I D+ L
Sbjct: 351 DVLREQGPAALKAQISNTKPFVEALFERERELEPFDTPEQRTNLKVRLRTLAATIADKDL 410

Query: 421 RYYYSQAIRDRLQQL--FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK--- 475
            + Y + + DRL ++   ++   + S  GR   +       +   +  ++ S  +G+   
Sbjct: 411 AHAYKEELLDRLDEMRAARRVKADASDAGRALSRQRWDNTPRRGGKGRLEGSTAEGRQAA 470

Query: 476 --LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             L + P    AALL+  I  P ++ ++ + L +  + +  L  +   L +  ++  +  
Sbjct: 471 AALQQAPRPFSAALLIAAIRDPKVVDDRIEVLMNQGFGDQRLDAIAQELVNLRMDADHVE 530

Query: 534 PEEIHQRLCERGFGE----LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              +  RL   G+ +     L++    V+      +  ++    +R  + QA  L  R  
Sbjct: 531 AGMVRGRLATAGYDDATLAALERSAAHVKALDAAQSAAQSPEDAIRGLWSQAFDLLIRLT 590

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            L R  +E +  +A    +G++     L +    V  
Sbjct: 591 ALERAVDEAKADLA---HEGDSHTLFRLKTERDAVKR 624


>gi|56696626|ref|YP_166987.1| DNA primase [Ruegeria pomeroyi DSS-3]
 gi|56678363|gb|AAV95029.1| DNA primase [Ruegeria pomeroyi DSS-3]
          Length = 649

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 207/634 (32%), Positives = 327/634 (51%), Gaps = 21/634 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   + ++ ++G+ V WD RK+N  KGD WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPPGFLDELRSRLSLTQVVGRKVMWDMRKSNQGKGDMWAPCPFHHEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF C  KGD L+F+       F+E+V+ LA  AG+ +P  DP+ ++K+  ++ L  +
Sbjct: 61  FYYCFGCQAKGDALTFVQQTENVGFMEAVEILAREAGMTMPARDPRAQEKQDHRSQLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF  +L          YL  RG+ + A+E +++G+APD    L +HLR KG  E
Sbjct: 121 MEQAVRFFRLNLSAGGGGAARDYLARRGLSAQALERWEIGFAPDGWQGLWDHLRGKGVGE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E I  AGL          YD FRNR++FPIR +RG+ IAFGGR +   ++ KYLNSPET+
Sbjct: 181 ELITGAGLAKPSTKGGKPYDTFRNRIMFPIRDARGRCIAFGGRAMDPKDNAKYLNSPETL 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG++L+N   A                   +I+ EGYMDV++L +AG    V+ LGT
Sbjct: 241 LFDKGRSLFNHGPARTAA----------GQGQPLIVAEGYMDVIALAEAGFGAAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE+QL+++W+++   ++  DGD  GLRAA + +DL L  L  G  V F ++  G+DPD
Sbjct: 291 AVTEHQLQMIWRIADEPIVALDGDTAGLRAALRVVDLALPLLEAGKSVRFAIMPEGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  A + ++ ++ P+V +LW+RETE R F++P+ +A L+  L+  I  I+D  +
Sbjct: 351 DLIRAEGPAAMQSVLDQARPMVQLLWQRETEGRVFDSPERKAALDKALREKIKLIRDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R +Y Q I+D   QLF+        +     +  R       +     S L     + + 
Sbjct: 411 RAHYGQEIKDLRWQLFRPQRGTKQPW---QPRGGRGAAPAAATAGTRASLLASSGEAAQI 467

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LREA +L   I  PA++      L  +   + +L  L        ++     PE + +R
Sbjct: 468 RLREAVILAAAIATPAVIVRFEHALERLDCHDPDLAMLRDLALRIGID----DPEGLRER 523

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    E L+ L        +       ++        + LA  +  R    + EE  +
Sbjct: 524 IDQTLGPEALENLYALRHVQVIPCMRRPGDVDLAEMTLAEELAKIQALRGYDAEIEEARE 583

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            IA+   +    + A           +  + +++
Sbjct: 584 DIAEDADESLTWRVAQAAEE----KQRAARSQNE 613


>gi|254486658|ref|ZP_05099863.1| DNA primase [Roseobacter sp. GAI101]
 gi|214043527|gb|EEB84165.1| DNA primase [Roseobacter sp. GAI101]
          Length = 650

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 217/634 (34%), Positives = 334/634 (52%), Gaps = 22/634 (3%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
            +L     +S ++G+ V WD RK+N  KGD WA CPFH EK+ SFH +D KGFYYCF CH
Sbjct: 2   DELRSRASLSQVVGRKVMWDARKSNQGKGDMWAPCPFHQEKSASFHVDDRKGFYYCFGCH 61

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
            KGD +SF+      SF+E+V+ LA  AG+P+P  DP+ ++K   +T L +++E A  FF
Sbjct: 62  AKGDAISFVRETENVSFMEAVEILAREAGMPVPQQDPRAQEKADKRTQLAQVMEQAVQFF 121

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
              L+         YL  RG+++ A+E +++G+A D    L +HL+ KG  +E I  AGL
Sbjct: 122 RLQLQTGAAGAARDYLARRGLNAQALERWEIGFAADQWQGLWDHLKAKGVEDELIFGAGL 181

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
                     YD FR R+IFPIR +RG+ IAFGGR +   ++ KYLNSPET LF KG++L
Sbjct: 182 AKPSTKGGRPYDTFRGRIIFPIRDARGRAIAFGGRAMDPNDNAKYLNSPETELFDKGRSL 241

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           YN   A                   +++ EGYMDV++L QAG    V+ LGTA+TE QL+
Sbjct: 242 YNVKDARTAA----------GQGQPLLVAEGYMDVIALVQAGFGAAVAPLGTAITESQLQ 291

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
           +LW++SP  ++  DGD  G RAA + IDL L  L  G  + F ++  G+DPD  +R +G 
Sbjct: 292 MLWRISPEPIITLDGDTAGQRAALRLIDLALPLLEAGQSLRFAVMPEGQDPDDLLRAHGA 351

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
            A +KL+  ++P+V +LW+RET+ R F++P+ +A L+  L+  I  I+D  +R +Y Q I
Sbjct: 352 PALQKLLDNAMPMVRLLWQRETDGRVFDSPERKAALDKSLREKIMLIRDPSIRSHYGQEI 411

Query: 429 RDRLQQLFQKYITEH--SGYGRYWKKNARHRDQKGPSQRLMQSSLV-KGKLSKKPSLREA 485
           +D   QLF+    +   +   R   +   +   +GPS     S LV    L     LREA
Sbjct: 412 KDLRYQLFRPQQAKKAFAPGARSAGQGRWNAAPQGPSPSAKSSILVTAAGLGATEHLREA 471

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            +L  L+  P +++E    +A +   + +   +   +        +  PE +H+++C+  
Sbjct: 472 VILCALLGCPQLVEEFETGVAAMACQDPDHAVIRDLMLRYA----HRSPEALHEKICDAL 527

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             + L+ +  Q   A         NI   R    + L   +  R L  +  +  + ++ V
Sbjct: 528 GAQALENMTTQRHVAITPCIRNPGNIEMTRMTVAEELGKLEAVRGLDAEIADAVEDLSGV 587

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             +G   + +         +    Q   QE   E
Sbjct: 588 ADEGLTWRLSEAAR-----NADRAQRSGQEDTAE 616


>gi|312113101|ref|YP_004010697.1| DNA primase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218230|gb|ADP69598.1| DNA primase [Rhodomicrobium vannielii ATCC 17100]
          Length = 627

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 206/646 (31%), Positives = 333/646 (51%), Gaps = 40/646 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP D + ++   +P+S ++ + V   R+       +Y    PF  E++PSF  ND KG
Sbjct: 1   MRYPPDLLDEIRSRLPVSRVVERRVKLKRQGR-----EYIGLSPFKTERSPSFTVNDHKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF+    GD  +FL  + G SF E+V+RLAA AGV LP  +P    KE  ++ +   
Sbjct: 56  FYHCFATGEHGDVFTFLMKVEGLSFPEAVERLAAEAGVMLPEPEPVDAVKESHESRVRAA 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E    FF  +L +        YL++RG+ +  +  F+LGYAPDS+  L++HL  KGF+ 
Sbjct: 116 LEETCRFFEVALASLDGMAARAYLEKRGVGAAEVAAFRLGYAPDSKTRLKQHLSAKGFTL 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            ++ +AGLLI G++    YDRFR RLIFPI  ++ +VIAFGGR L   +  KYLNSPET+
Sbjct: 176 AEMEDAGLLIHGEDIPVPYDRFRGRLIFPITDAKRRVIAFGGRALQPDQQPKYLNSPETL 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  L+N   A +  +              +IL EGYMDV++L + G  N V+ LGT
Sbjct: 236 LFHKGHVLFNHAAARDASK----------VERAVILAEGYMDVIALARGGFPNAVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  QLRLLW +SP   LCFDGD  G +AA++A+D  L  L PG  + F  L  G DPD
Sbjct: 286 ALTADQLRLLWAMSPLPTLCFDGDSAGRKAAHRALDTALPFLEPGRSLQFAFLPEGRDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +    + A  KL+ E LP +D+LW RE E  + +TP++RA  E  L      I+ + L
Sbjct: 346 DMVSGGARDALAKLLAEPLPFIDVLWSREAEKHALDTPEQRASFEARLTEAAQKIEHKSL 405

Query: 421 RYYYSQAIRDRLQQL-----------------FQKYITEHSGYGRYWKKNARHRDQKGPS 463
           R++Y    R+RL+ +                   + +   +G  R  +  A  R      
Sbjct: 406 RFHYMAGFRERLRGIGHKSGGLPRPRPDAESWRARSMLAPTGGARKPRAPAGGRSMLPQR 465

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
              + SS +    +   + REA ++  ++ HP ++ E  +E+A I + + +  ++ + + 
Sbjct: 466 TSELLSSPLTQATAPVTAPREAVIISAILAHPWLIDEHMEEIARIPFIDPDCNRIRNAVL 525

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           +     +    +++ + L + G+   L++LD+            +A    V++G++  + 
Sbjct: 526 TVHQFDESLDNKKLLEHLSKEGYEAELERLDKACAHKADPHFAPDAEREQVQEGWRHVMM 585

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           L+ +          +   + +  ++  ++++      L  V  Q+ 
Sbjct: 586 LHDKAG--------VPSSLLEAESEWMSDQSDENSVRLIAVKQQVE 623


>gi|126730241|ref|ZP_01746052.1| DNA primase [Sagittula stellata E-37]
 gi|126708974|gb|EBA08029.1| DNA primase [Sagittula stellata E-37]
          Length = 675

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 214/653 (32%), Positives = 333/653 (50%), Gaps = 45/653 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ ++   + +++++G+ V WD+RK+   KGD WA CPFH EKT SFH +D KG
Sbjct: 1   MSLPTGFLDEIRNRLSLADVVGRKVLWDKRKSQPGKGDLWAPCPFHHEKTASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           +YYCF CH KGD +SF+       F+E+++ LA  AG+ +P  DP+ ++K   +T L  +
Sbjct: 61  YYYCFGCHEKGDAISFVQKTENVGFMEAIEILATEAGMEMPARDPQAKQKADRRTILGEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF   LK         YL +RG+D+   E F++G+AP    +LR  L  KG S 
Sbjct: 121 MEQAVQFFRFQLKTQAATDARAYLAKRGLDAGTQERFEIGFAPAGWDNLRLALTGKGVSV 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E ++  GL    D     YD FRNR++FPIR +RG+ IAFGGR +   ++ KYLNSPET 
Sbjct: 181 EHLVACGLSKTSDKGREPYDVFRNRIMFPIRDARGRCIAFGGRAMDPDDNAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K +NLYN   A                   +++ EGYMDV++L +AG +  V+ LGT
Sbjct: 241 LFDKSRNLYNLRAAREA----------TGRGQPLVVAEGYMDVIALSEAGFKGAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QL  +W+LSP  ++  DGD  GLRAAY+ IDL L  L  G  + F L+  G+DPD
Sbjct: 291 AVTENQLHAMWRLSPEPIIALDGDKAGLRAAYRVIDLALPLLEAGKGLRFALMPDGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  A +  +  +LP+VD+LW++ETE RSF++P+ RA L+  L+  +  +KD  L
Sbjct: 351 DLIRSDGPDAVQTCLDAALPMVDLLWQQETEGRSFDSPERRAALDKVLRERVQRVKDPSL 410

Query: 421 RYYYSQAIRDRLQQLFQKYITE------------------------HSGYGRYWKKNARH 456
           R +Y +A+R+ L +L+ +   +                         SG G+  +   + 
Sbjct: 411 RRHYGEAVRELLDKLYNRAGVQPAEPWNGGNGGGFSGGFSGGFAGGFSGKGKGARGRRKW 470

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
              + PS     S LV      +  +R+  +L  L +HP +++    +L  +   + +L 
Sbjct: 471 NAPEPPSPTAKASMLVARGEDAEVVMRQEIVLAILYHHPTLIEAFDGQLEKLTPRDPDLA 530

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            L   L     ++   L +   +R+       LL         A +    ++      R 
Sbjct: 531 ALRDVLLD-MADRPERLADAAMERIGAGWLETLLA----ARHIAVVPCIRSQGAKDLARM 585

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAK------GEAEKTAILISILHE 623
              + LA  + +     +  E E+ +  +  +       EA +    I  L +
Sbjct: 586 TVAEELAKLEAYHGWQAELREAEEDLDDLADEALTWRLAEAARARSAIGRLKD 638


>gi|302389495|ref|YP_003825316.1| DNA primase [Thermosediminibacter oceani DSM 16646]
 gi|302200123|gb|ADL07693.1| DNA primase [Thermosediminibacter oceani DSM 16646]
          Length = 610

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 183/637 (28%), Positives = 286/637 (44%), Gaps = 39/637 (6%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M+ YP + I+++     I  ++  YV   +R  N     Y   CPFH EKTPSF  +  K
Sbjct: 1   MSLYPEELIREVQNRADIVEIVSDYVSLKKRGEN-----YVGLCPFHSEKTPSFTISPKK 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDL 117
             +YCF C   G+  SFL      +F E+V+ LA   GV LP      K+ +  K + ++
Sbjct: 56  QLFYCFGCGTGGNIFSFLMKKENWTFPEAVRWLAERVGVRLPEEGTWGKVSEAFKQKREI 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           + +  +A +FFH +L K A  KR   YL  RGI S  +E F LGYAP     L   +R K
Sbjct: 116 LEINRLAAEFFHQNLIKTAEGKRAREYLANRGITSETVEKFFLGYAPPRWDGLIRFMRSK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G  ++ +++AGL+I   +    YDRFR+R+IFPI+   G  + FGGR L +GE  KYLNS
Sbjct: 176 GVRDDSLLKAGLVIPRSDGKGYYDRFRDRVIFPIKDITGNTVGFGGRILGEGEP-KYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K + LY                      S +ILVEGYMD +SL Q G    V+
Sbjct: 235 PETTVFTKREQLYGLPMIKK-------------GGSNLILVEGYMDCISLHQNGFTQTVA 281

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+LTE Q ++L + S  +++ +D D  G  A  + I++    +  G +V  + L  G
Sbjct: 282 SLGTSLTEQQAKILKRYSEEVIIAYDADTAGQSATLRGIEI---LVKEGLKVRVLSLPEG 338

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPD FIR  GK AF + +  +   VD             T D + +   +  + +  I+
Sbjct: 339 KDPDEFIRTRGKDAFAEQLSSARNFVDYKLDLAGRGLDLKTRDGKIKFIKNAISVLAGIE 398

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           ++  R  Y Q + + L    Q    E +               K    R     L + K 
Sbjct: 399 NRVERELYVQKLSEELNIPRQALYEEINKIIDRTTLPNIGSKYKNSQLRDNNKELTRFKA 458

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  +L  +I   +   +  + L    + + + +K+   +F      +   P  
Sbjct: 459 LSGVRKAERDILRMMIEDDSARDKIMKNLTPNNFVDTKHRKIAEMIFEMVNRNEVVTPNG 518

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I  +L +    E   +L   +               D+      AL    +   L    +
Sbjct: 519 ISIKLKDD--QETAAELANIL-----------METADIENSMVDALINRVKENYLKLAIK 565

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +I+ +I Q    GE +K   L++  H + ++I Q++ 
Sbjct: 566 KIKNEINQAEKIGEVKKAFSLLNTYHRLKLEIEQLKR 602


>gi|86137898|ref|ZP_01056474.1| DNA primase [Roseobacter sp. MED193]
 gi|85825490|gb|EAQ45689.1| DNA primase [Roseobacter sp. MED193]
          Length = 676

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 218/687 (31%), Positives = 350/687 (50%), Gaps = 55/687 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+    F+ +L   I IS+++G+ V WD+RK+N  KGD WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLTPGFMDELRSRISISDVVGRKVMWDQRKSNVGKGDLWAPCPFHHEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           +YYCF C  KGD L F+       F+E+V+ LA  AG+ +P  DPK ++K+  +T LI +
Sbjct: 61  YYYCFGCQAKGDALKFVQETENVGFMEAVEILAREAGMEMPARDPKAQQKQDRRTQLIEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF   LK         YL +RG+   A+E +++G APD   +L +HLR K   E
Sbjct: 121 MEQAVQFFRLQLKTNNASMARSYLQKRGLTPPALERWEIGLAPDGWQNLWDHLRGKNVPE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E I+ AGL         +YD FRNR++FPIR +RG+ IAFGGR +   ++ KYLNSPET 
Sbjct: 181 ELIMAAGLAKPSTKGGRAYDTFRNRIMFPIRDARGRAIAFGGRAMDPNDNAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG++LYN                     + +I+ EGYMDV++L + G  + V+ LGT
Sbjct: 241 LFDKGRSLYNH----------APARAAAGRGTPLIVAEGYMDVIALSEGGFPSSVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QL+L+W+++   ++  DGD  GLRAA + IDL L  L  G  + F ++  G+DPD
Sbjct: 291 AVTETQLQLMWRMADEPIIALDGDTAGLRAAMRVIDLALPLLQAGKSLRFAIMPDGQDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I+  G  A + ++ +++P+V +LW+RETE + F++P+ +A L+  L+  I  I+D  +
Sbjct: 351 DLIKSKGPEAVQAVLDQAMPMVKLLWQRETEGKVFDSPERKAALDKALREKIKLIRDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITE-------------------------HSGYGRYWKKNAR 455
           R +Y + I+D   +LF+    E                          SG+G   +K  +
Sbjct: 411 RKHYGEDIKDLRWELFRGSRPEGRDRDFDTGGSGEGWKGGNSWKQGRKSGFGDGGRKPWK 470

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSL-REAALLLTLINHPAILQEQYQELADIRYDNNE 514
            ++         +SSLV      + +  REA +L   I+ P ++ E    L  ++  + E
Sbjct: 471 GQNISPAPLASTRSSLVAAADDAEIARTREAVVLAVAISTPDMIAEFEGNLERMQCADAE 530

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
           L +L   +    ++     P ++  RL E    + L+ L      A +      ++    
Sbjct: 531 LGRLRDQVLRFGID----TPSDLKTRLRENLGAQALENLMALRHVAIIPCLRRPSDTEAA 586

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEK------------QIAQVTAKGEAEKTAILISILH 622
           RQ   +  A  +  + L  +  E E+            ++ Q          +      +
Sbjct: 587 RQTLAEEFAKLEAMQGLDAELAEAEEDLIGLADEALTWRLKQAAEARNRAVRSENEDKAN 646

Query: 623 -EVHIQIHQIESQEAMIEGFGKMSGRL 648
            +V     +++ +E  ++ FG +  R+
Sbjct: 647 FDVGENGARLDREE--LDAFGALLDRI 671


>gi|259416280|ref|ZP_05740200.1| DNA primase [Silicibacter sp. TrichCH4B]
 gi|259347719|gb|EEW59496.1| DNA primase [Silicibacter sp. TrichCH4B]
          Length = 669

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 214/667 (32%), Positives = 332/667 (49%), Gaps = 37/667 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   + +S+++G+ V WD+RK+   KGD W+ CPFH EKT SFH +D KG
Sbjct: 1   MSLPPGFLDELRTRVSLSDVVGRKVMWDQRKSQPGKGDMWSPCPFHHEKTASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD L F+      SF+E+V+ LA  AG+ +P  DPK  +K+  +T L  +
Sbjct: 61  FYYCFGCHAKGDALKFVQETENVSFMEAVEILAGEAGLEMPKRDPKAAEKQDRRTQLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  +F   LK         YL  RG+D  A++ +++G+APD   +L + L+ K  ++
Sbjct: 121 MEQAVHYFRLQLKTQAASEARAYLARRGLDPAALDRWEIGFAPDGWQNLWDALKGKDVAD 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + I+ AGL    +     YD FRNR++FPIR +RG+ IAFGGR +   +S KYLNSPET 
Sbjct: 181 DLILGAGLAKPSNKGGKPYDVFRNRIMFPIRDARGRAIAFGGRAMDPNDSAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+NLYN   A     +           S +I+ EGYMDV++L +AG Q+ V+ LGT
Sbjct: 241 LFDKGRNLYNHGPARAASGR----------GSTLIVAEGYMDVIALSEAGFQSAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+T+ QL LLW++S   V+  DGD  GLRAA + ID+ L  L  G  + F ++  G+DPD
Sbjct: 291 AVTDNQLHLLWRMSDEPVIALDGDTAGLRAAMRLIDMALPLLEAGKSLRFAIMPEGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  A + ++ +++P+V +LW+RETE R F++P+ +A L+  L+  I  I+D  +
Sbjct: 351 DLIRAEGPEAVQTVLDQAIPMVQLLWRRETEGRVFDSPERKAALDKSLREKIKLIRDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITE-------------------HSGYGRYWKKNARHRDQKG 461
           R +Y++ I++   QLF+                            G              
Sbjct: 411 RLHYAEDIKELRFQLFRGQRGGSGQGGTGYGQRYGGYKSGSRVQGGFRDGSRMPWGAPPP 470

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
           P      S +   +      +REA +L T I  P ++ E    L  ++  + +   L   
Sbjct: 471 PRSTTRASMVASSEEQDFARVREAVILATAITTPTVIPEFEINLERMQCQDMDHAHLRDL 530

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +    ++    L +EI   L       LL         A         ++        + 
Sbjct: 531 VLRYGIDAPERLRDEIAYALGPDALENLLS----LRHVAISPCVRKPGDLDMASLTLAEE 586

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
            A  +    L+ +  E E+ +       +   T  L     E   +  + E+++      
Sbjct: 587 FAKLESIAGLNAELAEAEEDL---DGLADEALTWRL-RQAAEARNRAVRSENEDKATYDV 642

Query: 642 GKMSGRL 648
           G+   RL
Sbjct: 643 GENGARL 649


>gi|99081982|ref|YP_614136.1| DNA primase [Ruegeria sp. TM1040]
 gi|99038262|gb|ABF64874.1| DNA primase [Ruegeria sp. TM1040]
          Length = 669

 Score =  410 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 216/667 (32%), Positives = 333/667 (49%), Gaps = 37/667 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   I +S+++G+ V WD+RK+   KGD W+ CPFH EKT SFH +D KG
Sbjct: 1   MSLPPGFLDELRTRISLSDVVGRKVMWDQRKSQPGKGDMWSPCPFHHEKTASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD L F+      SF+E+V+ LA  AG+ +P  DPK  +K+  +T L  +
Sbjct: 61  FYYCFGCHAKGDALKFVQETENVSFMEAVEILAGEAGLEMPKRDPKAAEKQDRRTQLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  +F   LK         YL  RG+D+ A++ +++G+APD   +L + L+ K  ++
Sbjct: 121 MEQAVKYFRLQLKTQAASEARAYLARRGLDAAALDRWEIGFAPDGWQNLWDALKGKDIAD 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + I+ AGL    +     YD FRNR++FPIR++RG+ IAFGGR +   ++ KYLNSPET 
Sbjct: 181 DLILGAGLAKPSNKGKKPYDVFRNRIMFPIRNARGRAIAFGGRAMDPNDNAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+NLYN   A     +           S +I+ EGYMDV++L +AG Q+ V+ LGT
Sbjct: 241 LFDKGRNLYNHGPARAASGR----------GSTLIVAEGYMDVIALSEAGFQSAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+T+ QL LLW++S   V+  DGD  GLRAA + ID+ L  L  G  + F ++  G+DPD
Sbjct: 291 AVTDNQLHLLWRMSDEPVIALDGDTAGLRAAMRLIDMALPLLEAGKSLRFAIMPEGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  A + ++ +++P+V +LW+RETE R F++P+ +A L+  L+  I  I+D  +
Sbjct: 351 DLIRAEGPEAVQAVLDQAIPMVQLLWRRETEGRVFDSPERKAALDKSLREKIKLIRDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKY-------------------ITEHSGYGRYWKKNARHRDQKG 461
           R +Y+  I++   QLF+                            G              
Sbjct: 411 RLHYANDIKELRFQLFRGQRGGGGQGGTGYGQRYGGFKPGSRMQGGFRDGARMPWGAPPP 470

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
           P      S +   +      +REA +L T I  P ++ E    L  ++  + E   L   
Sbjct: 471 PRSTTRASMVASSEEQDFARVREAVILATAITTPTVIPEFEINLERMQCQDMEHAHLRDL 530

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +    +E    L +EI   L       LL         A         ++        + 
Sbjct: 531 VLRYGIEAPERLRDEIAYALGPDALENLLS----LRHVAISPCVRKPGDLDMASLTLAEE 586

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
            A  +    L+ +  E E+ +       +   T  L     E   +  + E+++      
Sbjct: 587 FAKLESIAGLNAELAEAEEDL---DGLADEALTWRL-RQAAEARNRAVRSENEDKATYDV 642

Query: 642 GKMSGRL 648
           G+   RL
Sbjct: 643 GENGARL 649


>gi|77463968|ref|YP_353472.1| DNA primase [Rhodobacter sphaeroides 2.4.1]
 gi|77388386|gb|ABA79571.1| DNA primase [Rhodobacter sphaeroides 2.4.1]
          Length = 643

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 201/646 (31%), Positives = 320/646 (49%), Gaps = 21/646 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   +P+S ++G+ V WD RK+N  KGD+WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPPGFLDELRNRVPLSQVVGRKVTWDLRKSNQGKGDFWAPCPFHQEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD ++F+       F+E+V+ LA  AG+ +P  DP+  +K   ++ L  +
Sbjct: 61  FYYCFGCHAKGDAIAFVKDTENVGFMEAVEILAREAGMAMPARDPRAAEKADRRSQLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  F+   L+         YL  R +     E F +G+APD R +L + L  KG + 
Sbjct: 121 MEEAVKFYRLQLRTGAASAARDYLARRRLSEEGQERFGIGFAPDGRQALFQALTGKGIAP 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++EAGL    ++    YDRFR R+IFPIR +RG+ I+ GGR +      KYLN PET 
Sbjct: 181 DLLVEAGLCARPEDGGAPYDRFRGRIIFPIRDARGRAISLGGRAMDPAARAKYLNGPETP 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+NLYN   A     K             +++ EGYMDV++L +AG +  V+ LGT
Sbjct: 241 LFDKGRNLYNAGPAREAAGK----------GQPLVVAEGYMDVIALSEAGFRATVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QLRL+W++ P  V+  DGD  G+RAA + +DL L  L  G  + F +L  G DPD
Sbjct: 291 AITEDQLRLMWRIHPEPVIALDGDAAGIRAALRVVDLALPLLEAGQGLRFAVLPPGLDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G +A  +++  + P+V +LW+RETE   F++P+ RA L+  L+  +  I D  +
Sbjct: 351 DLIRAEGASAMGRVLEAAQPMVGLLWRRETEGHVFDSPERRAALDKRLRAAVQRIADPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK-K 479
           R +Y   +     ++F   +   +    + +   R      P      S L      + +
Sbjct: 411 RRHYGDELNRLRMEIFGTSVPRRA----FHRGGKREPLAVAPHPSTRASLLATAAGERIE 466

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             +R   +L T   HP ++ E    L  +   + + + L   L +           +  +
Sbjct: 467 EEMRLGVILATCALHPTLIHEFETALEALELSDPDHRALHRVLLAAAG----MAEADTAR 522

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                  G  L++L          S     ++   R    + LA  +  R   ++ EE  
Sbjct: 523 GAIRAEAGPALERLLALTHVRICPSVRHPGDLEMARMCLAEELAKLEARRGARQEIEEAV 582

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           + +A +  +G   + +      H    +  +++    + E    +S
Sbjct: 583 EDLAGLVDEGLTWRLSQAAEARH--RAERARLDDSSDLGEDRAALS 626


>gi|75676625|ref|YP_319046.1| DNA primase [Nitrobacter winogradskyi Nb-255]
 gi|74421495|gb|ABA05694.1| DNA primase [Nitrobacter winogradskyi Nb-255]
          Length = 634

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 201/638 (31%), Positives = 324/638 (50%), Gaps = 34/638 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  FI ++   +P+S ++G+ V   R        ++    PF  EKTPSF  ND K 
Sbjct: 1   MRFPPSFIDEVKARLPVSEVVGRRVKLKRAGR-----EFKGLSPFQQEKTPSFTVNDQKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+ FS    G+   F+    G SF E+V+RLAA+AG+PLP    + E++E+ +  L  +
Sbjct: 56  FYHDFSTGKHGNIFDFVMETEGVSFPEAVERLAAMAGLPLPRNSREDEQREQRRKSLFEV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  +F  +L +    +   YL +R I   +I  F++GYA   R++L+E+L  KG   
Sbjct: 116 MELAAKYFEQNLASRVGAQARGYLSDRAIVPSSIVEFRIGYATADRFALKEYLGSKGVPV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +IEAGLLI GD+    YDRFR+R++ PI   RG+++ FGGR L K    KYLNSPET 
Sbjct: 176 ADMIEAGLLIAGDDIPVPYDRFRDRIMIPIHDQRGRLVGFGGRALRKDVQPKYLNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG  ++NF  A                ++ ++ VEGYMD +++ QAG++ VV+++GT
Sbjct: 236 IFHKGSVVFNFHRARQPAH----------EANSVVAVEGYMDAIAVYQAGIKAVVATMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A TE Q+  LW+LSP  V+CFD D  G+ AAY++ID +L  L  G    FV +   +DPD
Sbjct: 286 AFTEEQIATLWRLSPEPVVCFDSDRAGVAAAYRSIDRILPLLRVGKTFRFVFMDEQKDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  AF  ++  SLPL D+LW+RET+ +   TPD++A LE  L   +  I+D  +
Sbjct: 346 DLIREKGVEAFRNVLSGSLPLWDVLWQRETDGQDVRTPDKQAALEQRLYALVRTIQDPAV 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              + +  R +L  LF             W+ N      +  +      + ++ +   + 
Sbjct: 406 NTAFFRTSRMQLANLF-------------WQVNRGPSRNQKEAGSKFVRNELRIRGEDQR 452

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           S  +  LL  L+ +P +L+++   +  +++ +    +  S LF   V +       I +R
Sbjct: 453 SGLQKVLLGMLVQYPELLEDKRDVVLRLQFPD-AFDQFLSHLFQLLVTEAKLSVSVIWER 511

Query: 541 LCERGFGELL----KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           L    +  L          + R   L+                  L  + R  L  + +E
Sbjct: 512 LDHEFYETLQTVHGDAGAGKPRGHRLFERFPVLKNDPPSDFVSGCLDHFIRILLWHQLEE 571

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +IE+       +G+    A L++++ E H +   I ++
Sbjct: 572 DIERARLDA-GEGDETAVARLLNLVREGHAEQEAISAE 608


>gi|126733204|ref|ZP_01748951.1| DNA primase [Roseobacter sp. CCS2]
 gi|126716070|gb|EBA12934.1| DNA primase [Roseobacter sp. CCS2]
          Length = 661

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 202/600 (33%), Positives = 314/600 (52%), Gaps = 15/600 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   + +  ++G+ V WD RK+N  KGD WA CPFH EKT SFH +D KG
Sbjct: 7   MSLPPGFLDELRNRLSLGQVVGRKVMWDTRKSNQGKGDLWAPCPFHQEKTASFHVDDRKG 66

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD ++F+       F+E+V+ LAA AG+P+P  DP+ ++K   +T L+ +
Sbjct: 67  FYYCFGCHAKGDAITFVRETENVDFMEAVKILAAEAGMPVPERDPQAQEKADARTVLVDV 126

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  +    L+         YL+ RG+ + A   +++G+AP +   + E L  KG  +
Sbjct: 127 MEQAVQYHRLQLQTGAAADARDYLERRGLSADAQARWEIGFAPPN-GGVLEQLSGKGIDQ 185

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + II+AGL  + D     Y+RFR+R++FPIR +RG+ I FGGR +      KY NSPET 
Sbjct: 186 KLIIDAGLAAESDRGNGLYNRFRDRIMFPIRDARGRAIGFGGRAMDPNHPAKYYNSPETA 245

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG++L+N   A     K             +++ EGYMDV++L +AG    V+ LGT
Sbjct: 246 LFDKGRSLFNHGPAREAAGK----------GKPLVVAEGYMDVIALSEAGFTATVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QLRL+W+ +P  ++  DGD  GLRAA + ID+ L  L  G  + F L+  G DPD
Sbjct: 296 AITEDQLRLMWRTAPEPIISLDGDKAGLRAAMRVIDIALPLLEAGQSLRFALMPEGLDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I+  G  A +KL+ +++P+V +LW+RETE  +F++P+ +A LE  L+  +  I+D  +
Sbjct: 356 DLIKAQGAGAMQKLLDQAIPMVQLLWRRETEGGTFDSPERKAALEKALREKVELIRDPTI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM--QSSLVKGKLSK 478
           R +Y QA++D    LF                N+R    K     +   +SS +    + 
Sbjct: 416 RSHYDQALKDMRWALFSNRKAASVRKAGGGTWNSRQDPWKREVSPVATSRSSALASGAAD 475

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +  LREA +L T I  P +  E    L  +   +     L + L          L   I 
Sbjct: 476 QDHLREAVILATFIAAPTVASEFETGLEQMECRDPIHHDLQACLLRHLGADD--LRAAIV 533

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    +L  Q    +  A       +   + + + + +  A   + R +    E++
Sbjct: 534 ADLGDTPLEKLFAQNHVAISPAIRRGGDVDIARLCLAEEFAKLTARRGQVREIEDAVEDL 593


>gi|315499352|ref|YP_004088156.1| DNA primase [Asticcacaulis excentricus CB 48]
 gi|315417364|gb|ADU14005.1| DNA primase [Asticcacaulis excentricus CB 48]
          Length = 632

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 209/645 (32%), Positives = 319/645 (49%), Gaps = 26/645 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+++L   +  S +IG+ V   R        ++    PF  EKTPSF+ ND KG
Sbjct: 1   MRFDDRFLEELKSRLRPSEVIGKAVKLRRNGR-----EWVGLSPFSKEKTPSFYVNDEKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F++ FS    GD +SFL      SF+E+V+RLA+ AG+ LPV  P+  + E+ +  L   
Sbjct: 56  FFHDFSSGKHGDIISFLQETERLSFVEAVERLASEAGMALPVQTPQAAQAEQKRQSLNDW 115

Query: 121 IEVATDFFHHSL--KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           +E+A  +F   L       K    YL +RG+    +  F LGYAP  + +L++ L QKG 
Sbjct: 116 MELAARWFAARLHDNTPGAKAARDYLKKRGLSDQDVAHFGLGYAPKEQTALKDALVQKGA 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
              +++E GLLI+ +  A  YDRFRNRL+FPI  +R ++++FGGR L   E  KYLN PE
Sbjct: 176 KVSELVECGLLIEIEGKA-PYDRFRNRLMFPIEDARSKIVSFGGRALDPDEKAKYLNGPE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LFHKG  LY    AL  L           +   +++VEGYMDVL+  +A +   V+ L
Sbjct: 235 TPLFHKGSLLYGLPKALKILG-------SSQTGPELVVVEGYMDVLACQRAQIA-AVAPL 286

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE Q+ +LW+  P   LCFDGD  G+RAA +A+D  L  L PG      L++ G+D
Sbjct: 287 GTALTEEQIDILWRRHPEPTLCFDGDKAGMRAANRALDRALPKLKPGKSFKVCLITGGKD 346

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD  +R  G  A  + + E+ P V++L+KRE E    +TP+ +A L   L+     I+D+
Sbjct: 347 PDDVLREKGALALRESLSETQPFVEVLFKRERELEPLDTPERKAGLRKRLRALAAQIEDK 406

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEH-------SGYGRYWKKNARHRDQKGPSQRLMQSSL 471
            L   Y Q +  R   LFQ+             G GR+  ++A+ R  + P+    +  +
Sbjct: 407 DLADSYRQDLMARYDALFQRQPQNLQPRFQSAQGRGRFAYRDAQGRLIEPPTIATPEGQM 466

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
               LSK      AAL   L++HP  + +  + L      +  L  L   L S       
Sbjct: 467 AARALSKALDPMAAALAQGLLDHPDWMFDHMEALESYGLGDPALDALVRALVSLSFSTSP 526

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                +++ L  +GFG LL ++ +    +       +  + D + G+ +A   + R   L
Sbjct: 527 LDSGAVNRHLQNQGFGALLSEIQKAALRSASPILAQDKTLADAQAGWIKAFNAFARLTAL 586

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            R  +         +A+ +AE  A        +   +   +  EA
Sbjct: 587 DRALKAAR---DDASAEFDAEIFARTKQERDSLRKALKSGQIFEA 628


>gi|84515378|ref|ZP_01002740.1| DNA primase [Loktanella vestfoldensis SKA53]
 gi|84510661|gb|EAQ07116.1| DNA primase [Loktanella vestfoldensis SKA53]
          Length = 654

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 199/610 (32%), Positives = 312/610 (51%), Gaps = 18/610 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   + +  ++G+ V WD RK+N  KGD WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPPGFLDELRNRLSLGQVVGRKVMWDARKSNPGKGDLWAPCPFHQEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           +YYCF CH KGD +SF+       F+E+V+ LA  AG+P+P  DP  ++K  ++  L+ +
Sbjct: 61  YYYCFGCHAKGDAISFVRETENVDFMEAVKILAGEAGMPMPERDPAAQQKADLRGQLVEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E    +    L+ A       YL  RG+   A   + +G+AP        HL  +G   
Sbjct: 121 MEKVIKWHRLQLQTAAATEARDYLARRGLSPEAQARWDIGFAPAQ-GGALAHLSAQGVDA 179

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + +I AG+  + D     YDRFR R+IFPIR +RG+ I  GGR +      KY NSPET 
Sbjct: 180 KLVIAAGIAAESDRGGAPYDRFRGRIIFPIRDARGRAIGMGGRAMDPNAPAKYYNSPETP 239

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG++L+N   A     K             +I+ EGYMDV++L +AG    V+ LGT
Sbjct: 240 LFDKGRSLFNHGPAREAAGK----------GKPLIVAEGYMDVIALAEAGFTATVAPLGT 289

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QLRLLW+++P  ++  DGD  GLRAA + ID+ L  L  G  + F L+  G DPD
Sbjct: 290 AITEDQLRLLWRIAPEPIIALDGDTAGLRAAMRLIDIALPLLESGQSLRFALMPPGLDPD 349

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I+  G  A +KL+  ++P+V +LW+RETE ++F++P+ +A L+  L++ I  I D  +
Sbjct: 350 DVIKTQGAGAMQKLLDAAIPMVQLLWQRETEGKNFDSPERKAALDKALRDKIKLIADPSI 409

Query: 421 RYYYSQAIRDRLQQLFQKYITEH-SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           R +Y +AI++    LF           G  W +NA    +        ++S++      +
Sbjct: 410 RSHYGEAIKEMRWALFSTRRPAAPRAQGGTWSRNADPWKRAISPVATARNSMLGAGAVSQ 469

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             LREA +L T+I  P++  E    L  I   +   + L + +             ++  
Sbjct: 470 EHLREAVILATMIVAPSVAVEFGDALERIDCRDPAHRDLQAAILRHLGN------ADLET 523

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            +      + L++L  Q   A   +   +      R    +  A     R  +R+ E+  
Sbjct: 524 IISADLGADALEKLLTQSHVAISPAVRRKGEAEVARLCLAEEFAKLTARRGHAREIEDAV 583

Query: 600 KQIAQVTAKG 609
           + +  +  +G
Sbjct: 584 EDLGGLADEG 593


>gi|332558840|ref|ZP_08413162.1| DNA primase [Rhodobacter sphaeroides WS8N]
 gi|332276552|gb|EGJ21867.1| DNA primase [Rhodobacter sphaeroides WS8N]
          Length = 643

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 201/646 (31%), Positives = 321/646 (49%), Gaps = 21/646 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   +P+S ++G+ V WD RK+N  KGD+WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPPGFLDELRNRVPLSQVVGRKVTWDLRKSNQGKGDFWAPCPFHQEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD ++F+       F+E+V+ LA  AG+ +P  DP+  +K   ++ L  +
Sbjct: 61  FYYCFGCHAKGDAIAFVKDTENVGFMEAVEILAREAGMAMPARDPRAAEKADRRSQLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  F+   L+         YL  R +     E F +G+APD+R +L + L  KG + 
Sbjct: 121 MEEAVRFYRLQLRTGAASAARDYLARRRLSEEGQERFGIGFAPDARQALFQALTGKGIAP 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++EAGL    ++    YDRFR R+IFPIR +RG+ I+ GGR +      KYLN PET 
Sbjct: 181 DLLVEAGLCARPEDGGAPYDRFRGRIIFPIRDARGRAISLGGRAMDPAARAKYLNGPETP 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+NLYN   A     K             +++ EGYMDV++L +AG +  V+ LGT
Sbjct: 241 LFDKGRNLYNVGPAREAAGK----------GQPLVVAEGYMDVIALSEAGFRATVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QLRL+W++ P  V+  DGD  G+RAA + +DL L  L  G  + F +L  G DPD
Sbjct: 291 AITEDQLRLMWRIHPEPVIALDGDAAGIRAALRVVDLALPLLEAGQGLRFAVLPPGLDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G +A  +++  + P+V +LW+RETE   F++P+ RA L+  L+  +  I D  +
Sbjct: 351 DLIRAEGASAMGRVLEAAQPMVGLLWRRETEGHVFDSPERRAALDKRLRAAVQRIADPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK-K 479
           R +Y   +     ++F   +   +    + +   R      P      S L      + +
Sbjct: 411 RRHYGDELNRLRMEIFGTSVPRRA----FHRGGKREPLAVAPHPSTRASLLATAAGERIE 466

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             +R   +L T   HP ++ E    L  +   + + + L   L +           +  +
Sbjct: 467 EEMRLGVILATCALHPTLIHEFETALEALELSDPDHRALHRVLLAAAG----MAEADTAR 522

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                  G  L++L          S     ++   R    + LA  +  R   ++ EE  
Sbjct: 523 GAIRAEAGPALERLLALTHVRICPSVRHPGDLEMARMCLAEELAKLEARRGARQEIEEAV 582

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           + +A +  +G   + +      H    +  +++    + E    +S
Sbjct: 583 EDLAGLVDEGLTWRLSQAAEARH--RAERARLDDSSDLGEDRAALS 626


>gi|149914288|ref|ZP_01902819.1| DNA primase [Roseobacter sp. AzwK-3b]
 gi|149811807|gb|EDM71640.1| DNA primase [Roseobacter sp. AzwK-3b]
          Length = 634

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 209/609 (34%), Positives = 310/609 (50%), Gaps = 18/609 (2%)

Query: 22  GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81
           G+ V WD RK+N  KGD WA CPFH EKT SFH +D KGFYYCF CH KGD + F+    
Sbjct: 3   GRKVMWDMRKSNQAKGDMWAPCPFHQEKTASFHVDDRKGFYYCFGCHAKGDAIGFVKDTE 62

Query: 82  GCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLH 141
              F+E+V+ LAA AG+P+P  DP+ ++K   +  L  ++E+A  FF   LK        
Sbjct: 63  NVDFMEAVRILAAEAGMPMPERDPQAQQKADRRQQLAEVMEMAVQFFRLQLKMGAGAAAR 122

Query: 142 YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS-ATSYD 200
            YL  RG+     E F++G+AP S  +L +HL  KG  +E I++ GL           YD
Sbjct: 123 DYLAGRGLAEAGQERFEIGFAPASWQALLDHLTSKGVEQELILDCGLCRRSTKPGGRPYD 182

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260
            FRNR++FPIR  RG+ IAFGGR +   +  KYLNS +T LF K + LY+   A     K
Sbjct: 183 AFRNRIMFPIRDPRGRCIAFGGRAMDPADDAKYLNSQDTELFDKSRVLYHHGQAREAAGK 242

Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320
                        +I+ EGYMDV++L  AG    V+ LGTA+TE+ L+LLW+++   ++ 
Sbjct: 243 ----------GKPLIVAEGYMDVIALAMAGFDASVAPLGTAVTEHHLQLLWRIADEPIIA 292

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380
            DGD  GLRAAY+ ID+ L  L  G  + F L+  G DPD  +R  G  A ++++  +LP
Sbjct: 293 LDGDGAGLRAAYRTIDVALPLLESGKSLRFALMPEGMDPDDLLRAKGPVAVQEILDRALP 352

Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
           +V +LW+RETE R F++P+ RA L+  L+  I  I+D  +R +Y +AI++    LF    
Sbjct: 353 MVQLLWQRETEARIFDSPERRASLDKALREKIMLIRDPSIRSHYGEAIKELRWALFSPRR 412

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
            E  G  + + +  R +      Q    S LV         LREA +L T+I  P +  +
Sbjct: 413 QEGGGARQGFGRGGRWQPPASARQTTRASLLVAAGEGAHQRLREALILATVICTPQVFDD 472

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              +L  +   + E ++L   +     +      E +  RL     G+ L++L      A
Sbjct: 473 VEGQLEGMTCSDPEHERLRGLILRHAGQAG----EALRARLETEAGGDALEKLLSLPHVA 528

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
              +     +    R    + L+  +  R L+ +  E  + +A      +   T  L   
Sbjct: 529 LAPAVRRPGDPDIARMTIAEELSKLEAERGLNAEVREAAEDLA---GVADEAVTWRLGQA 585

Query: 621 LHEVHIQIH 629
             E    + 
Sbjct: 586 AEERQRALR 594


>gi|15613938|ref|NP_242241.1| DNA primase [Bacillus halodurans C-125]
 gi|18203179|sp|Q9KD44|PRIM_BACHD RecName: Full=DNA primase
 gi|10173991|dbj|BAB05094.1| DNA primase [Bacillus halodurans C-125]
          Length = 599

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 179/630 (28%), Positives = 301/630 (47%), Gaps = 37/630 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++   + I ++IG+YV   ++  N     Y   CPFH E TPSF  +  K  
Sbjct: 4   RIPQETIEEIRRSVDILDVIGEYVQLKKQGRN-----YIGLCPFHGENTPSFSVSPDKQL 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   G+  +FL  + G +F+E+V+ LA  A V LP       K+ + +  LI + 
Sbjct: 59  YHCFGCGAGGNAFTFLEQIEGFTFVEAVETLAKRANVVLPERVSPSVKQNRDEELLISIQ 118

Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           E A  FFHH L      K    YL+ RG     IE F++G+AP    +L   L ++    
Sbjct: 119 EFAAKFFHHVLMLTEEGKAGRTYLERRGFTKEQIEHFQIGFAPPHWDALTNVLAKRDVDL 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +K  E+GLL++ ++    YDRFRNR+IFPIR+ +G+++AFGGRTL   +  KYLNSPE+ 
Sbjct: 179 KKAGESGLLVERESDGKRYDRFRNRVIFPIRNGKGKIVAFGGRTL-GDDKPKYLNSPESP 237

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F KGK LY F+ A   ++K           +  +L EGY+DV++  +AGV N V++LGT
Sbjct: 238 IFQKGKLLYGFYQARPAIRK----------ENEAVLFEGYVDVIAAWKAGVTNGVATLGT 287

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LTE Q R++ + +  +++C DGD  G  A +++ DL       G  V   ++  G DPD
Sbjct: 288 SLTEEQARMIRRNAETVIICNDGDAAGAEATFRSADL---LQQEGCHVKVAMIPDGLDPD 344

Query: 361 SFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +I+ YG   F+K +I ESL L+    K     R+     ER      +   I  +    
Sbjct: 345 DYIQKYGAERFKKDVIGESLTLMKFKMKYFRMGRNLQNEGERILYIEEIIKEIAKLSKAV 404

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R +Y + + +           E     R  K+  +    K  + R  +    + +L   
Sbjct: 405 ERDHYLRQLAEEFSLSLDALKQEQYRIYREMKRQNQVSQGKTNTVRQKKHDFEQKRLLPA 464

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  LL  ++ + ++ +   + L   R++ +  Q + + LF+ + E     P    Q
Sbjct: 465 YQNAERILLAHMMRNVSVAETVQERLGG-RFNVDHYQAIVAHLFAYYAEGFEPDPCTFIQ 523

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           RL ++    +  +L        +     E N  ++   Y + + +Y ++  L + +  ++
Sbjct: 524 RLEDQELIRVATELA-------MLEINEEINDQELND-YIEKIEMYPKWLELQQIESALK 575

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           K+        +    A     L  +  Q+ 
Sbjct: 576 KE-------TDPVLYATRKQELINMKKQLK 598


>gi|167648219|ref|YP_001685882.1| DNA primase [Caulobacter sp. K31]
 gi|167350649|gb|ABZ73384.1| DNA primase [Caulobacter sp. K31]
          Length = 641

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 185/648 (28%), Positives = 305/648 (47%), Gaps = 28/648 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ +L   +  S++IG+ V   R+       +Y    PF  EK+PSF  ND KG
Sbjct: 1   MRFDDHFLDELKQRLRPSDVIGKSVKLRRQGR-----EYAGLSPFTKEKSPSFFVNDDKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CFS    GD +S+L      +F E+V+RLAA AG+ LP  D +  +++K +  L   
Sbjct: 56  FYHCFSSGKHGDIISYLQETERLTFTEAVERLAAEAGMALPEPDARAAQEDKKRATLTDW 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  +F   L+    +    YL  R +       F++G++P+ R +L+++L  KG   
Sbjct: 116 METAAAWFESELRRPVGQAARDYLARRALPEDQWSRFRIGFSPNGRTALKDYLIAKGAKP 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            ++I+AGLLI  ++    YDRFR+R+IFPI  +RG+V++FGGR +      KYLN PET 
Sbjct: 176 AELIDAGLLIAPEDGGQPYDRFRDRIIFPITDTRGRVVSFGGRAMDPAARAKYLNGPETT 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LY  + A   L     +       + +++VEGYMDV++  +AG+   V+ +GT
Sbjct: 236 LFHKGRLLYGLYEARKLLH--AAQAAAPTEQTPLLVVEGYMDVVACQRAGLP-AVAPMGT 292

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE Q+ +LW+L P   L FDGD  G RAA +AID  L  L PG    F +++ G+DPD
Sbjct: 293 AMTEEQMEVLWRLHPEPTLSFDGDKAGQRAASRAIDRALPLLKPGRSFKFSIVTGGKDPD 352

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G  A    + ++ P V+ L+ RE +    +TP+ +A  +  L+     I D+ L
Sbjct: 353 DVLREQGAAALRSQLTQTTPFVEALFNRERDLEPLDTPERKAGFKQRLRAAAGTIADKDL 412

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y   +  +L  LF K      G    W              +  +         +  
Sbjct: 413 AAAYRDDLYAKLDALFPKPAFGGGGTHGSWGGGESRPWTPRAQWKGGRDRGPPDPGIRGV 472

Query: 481 SLRE---------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
           +  E         AA+ +  + HPA  +   + +  I + +  L  L + LF    ++  
Sbjct: 473 ARAEIVGRLNPFHAAVAVAALRHPAWARPYDEAIERIGFGDPRLAPLAAELFEALSDEIS 532

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                    L  +G G  L + +R            + +    R  +             
Sbjct: 533 DDVP-FRDILTRKGLGPQLAEAERVASAISAPFLDVKMDAHRARALWAACYEALV----- 586

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             +  + E+ +  +  +     TA  +S + ++  +I  +E Q + +E
Sbjct: 587 --EIGDAERALQSLRGE---AVTAGTLSAVRDLRTRIGVLERQISGLE 629


>gi|84687693|ref|ZP_01015566.1| DNA primase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664276|gb|EAQ10767.1| DNA primase [Rhodobacterales bacterium HTCC2654]
          Length = 652

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 209/622 (33%), Positives = 317/622 (50%), Gaps = 18/622 (2%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
            +L     ++ ++G+ V WD+RK+N  KGD WA CPFH EKT SFH +D KGFYYCF CH
Sbjct: 2   DELRTRTSLAQVVGRKVMWDQRKSNQGKGDLWAPCPFHQEKTASFHVDDRKGFYYCFGCH 61

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
            KGD LSF+       F+E+V+ LA  AG+ +P  DPK ++K   +T L  ++E A  FF
Sbjct: 62  AKGDALSFVKETENVGFMEAVEILAREAGMQMPERDPKAQEKADRRTQLAEVMEQAVQFF 121

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
              LK         YLD RG+   A + + +G+APD    L +HLR KG +++ I+ AGL
Sbjct: 122 RLQLKTNSGVGAREYLDRRGLKEAAQDRWDIGFAPDGWQGLWDHLRGKGVADDLILGAGL 181

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
                     YD FRNR++FPIR +RG+ IAFGGR +   ++ KYLNSPET LF KG++L
Sbjct: 182 AKASSKGKQPYDTFRNRIMFPIRDARGRCIAFGGRAMDPNDNAKYLNSPETELFDKGRSL 241

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           YN   A     K           + +++ EGYMDV++L +AG    V+ LGTA+TE QLR
Sbjct: 242 YNHGPAREAAGK----------GTPLVVAEGYMDVIALSEAGFGATVAPLGTAITEDQLR 291

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
           LLW+++P  ++  DGD  GLRAA + ID  L  L  G  + F ++  G DPD  I+  G 
Sbjct: 292 LLWRIAPEPIIALDGDTAGLRAAMRVIDTALPMLEAGQSLRFAIMPEGLDPDDLIKAQGA 351

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
            A +K++  + P+V +LW+RETE + F++P+ RA L+  L+  I  I+DQ +R +Y + I
Sbjct: 352 GAMQKVLDGARPMVSLLWQRETEGKVFDSPERRAALDRDLRQAIAKIQDQSIRQHYGEEI 411

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP----SQRLMQSSLVKGKLSKKPSLRE 484
           +    +LF          G +     R    K            S L       +  LRE
Sbjct: 412 KRLRYELFNPRRDSAPRQGGWQGGGGRRGPWKPAGPAFQPATKGSLLAAASGQVEEVLRE 471

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           A +L TL+ HP +++        +    +E   +   + S   E      E++  ++   
Sbjct: 472 AVILATLVTHPHLIESFESAFERVEMATDEHAAMQRAILSFDGEA----TEDLCAKIDAE 527

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                L++L              + +         + LA     R    + ++   +I  
Sbjct: 528 VGTRALEKLFALNHVQIAPPIRRKDDPELAALCLAEELAKLDAARGARHELDDAVAEIGA 587

Query: 605 VTAKGEAEKTAILISILHEVHI 626
           ++ +G   + +  + +L E   
Sbjct: 588 LSDEGLTFRLSEAVRLLDEARR 609


>gi|85715951|ref|ZP_01046928.1| DNA primase [Nitrobacter sp. Nb-311A]
 gi|85697149|gb|EAQ35030.1| DNA primase [Nitrobacter sp. Nb-311A]
          Length = 634

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 199/638 (31%), Positives = 322/638 (50%), Gaps = 34/638 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  FI ++   +P+S ++G+ V   R        ++    PF  EKTPSF  ND K 
Sbjct: 1   MRFPPSFIDEVKARLPVSEVVGRRVKLKRAGR-----EFKGLSPFQQEKTPSFTVNDQKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+ FS    G+   F+    G SF E+V+RLA +AG+PLP    + E++E+ Q  L  +
Sbjct: 56  FYHDFSTGKHGNIFDFVMETEGVSFPEAVERLAVMAGLPLPRSSREDEQREQRQKSLFEV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF  +L +    +   YL +R I   ++  F++GYA   R++L+E+L  KG   
Sbjct: 116 MELAAKFFEQNLASRVGAQARGYLSDRAIAPSSVIEFRIGYATPDRFALKEYLGSKGVPV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E +IEAGLLI GD+    YDRFR+R++ PI   RG+V+ FGGR L K    KYLNSPET 
Sbjct: 176 EDMIEAGLLIAGDDIPVPYDRFRDRIMIPIHDQRGRVVGFGGRALRKDAQPKYLNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG  ++NF  A                ++ ++ VEGYMD +++ QAG++ VV+++GT
Sbjct: 236 IFHKGSVVFNFHRARQPAH----------EANSVVAVEGYMDAIAVYQAGIKAVVATMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A TE Q+  LW+LSP  V+CFD D  G+ AAY+++D +L  L  G    FV +   +DPD
Sbjct: 286 AFTEEQIATLWRLSPEPVVCFDSDRAGVAAAYRSVDRILPLLRVGKTFRFVFMDEQKDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  AF  ++  SLPL D+LW+RET+ R   TPD++A LE  L   +  I+D  +
Sbjct: 346 DLIREKGVEAFRGVLSGSLPLWDVLWQRETDGRDIRTPDKQAALEQKLYTLVRTIQDPAV 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              + +  R +L  LF             W+ N     +   +      + ++ +   + 
Sbjct: 406 NTAFFRTSRMQLANLF-------------WQVNRGPSRKNREAGSKFVRNELRIRGEDQR 452

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           S  +  +L  L+ +P +L+++   +  + +   E     + LF   V        +I  +
Sbjct: 453 SGLQKVILGMLVEYPNLLEDKQDSVERLHFP-EEFNGFLTSLFRLLVTDAKLSVADIWTK 511

Query: 541 LCERGFGELL----KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           L    +  L     +  D + R   L+      +           L  + R       ++
Sbjct: 512 LKPEFYDTLQTVHGEAGDGKQRGHRLFERFPILSRDPPSDFVSGCLDHFIRILHWHELED 571

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +I++       +G+    A L++++ E H +   I ++
Sbjct: 572 DIQRARLDA-GEGDESAVARLLNLVREGHAEQEGISAE 608


>gi|254454455|ref|ZP_05067892.1| DNA primase [Octadecabacter antarcticus 238]
 gi|198268861|gb|EDY93131.1| DNA primase [Octadecabacter antarcticus 238]
          Length = 644

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 208/610 (34%), Positives = 324/610 (53%), Gaps = 15/610 (2%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
              + I  ++G+ V WD+RK+N  KGD WA CPFH EK+ SFH +D KG+YYCF CH KG
Sbjct: 2   RTRLSIGQVVGRKVMWDQRKSNQGKGDLWAPCPFHQEKSASFHVDDRKGYYYCFGCHAKG 61

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHS 131
           D +SF+      SF+E+V+ LA  AG+P+P  DP+ + K   +T L  ++E A  F+   
Sbjct: 62  DAISFVRETENVSFMEAVEILAVEAGMPVPKRDPQAQAKSDRRTLLAEVMEQAVQFYRLQ 121

Query: 132 LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191
           LK         YL  RG+   A+E +++G AP    +L +HL  KG +E+ I+ AGL   
Sbjct: 122 LKAGAGAEARDYLAGRGLSEAALERWEIGLAPQGWQNLWDHLSGKGVAEDLILGAGLGKP 181

Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNF 251
            +     YD FR+R++FPIR +RG+ IAFGGR +   ++ KYLNSPET LF KG++LYNF
Sbjct: 182 SNQGKKPYDTFRHRIMFPIRDARGRAIAFGGRAMDPNDNAKYLNSPETELFDKGRSLYNF 241

Query: 252 FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLW 311
             A     K             +++ EGYMDV++L +AG    V+ LGTA+TE QL+++W
Sbjct: 242 APAREAAGK----------GQPLLVAEGYMDVIALVEAGFGAAVAPLGTAVTETQLQMMW 291

Query: 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371
           +++P  V+  DGD  G RAA + IDL L  L  G  V F ++  G+DPD  ++  G  A 
Sbjct: 292 RIAPEPVITLDGDVAGQRAAMRVIDLALPLLEAGQSVRFAMMPDGQDPDDLLKSAGAGAM 351

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
            + +  +LP+V +LW+RE E ++F++P+ +A L+  L+  I  IKD  +R +Y QAI+D 
Sbjct: 352 RERVEGALPMVQLLWQREVEGKNFDSPERKAALDKSLREKIMLIKDPSIRSHYGQAIKDM 411

Query: 432 LQQLFQKYITEHSGYGRYWKKNAR-HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             +LF       +G G   ++     +  K P+Q   ++SL+ G  S +  LREA +L  
Sbjct: 412 RWELFGNNRKAFNGGGTGQQRGKWLPKGAKLPAQMSTKASLLGGGPSSEDHLREAVILAV 471

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-RLCERGFGEL 549
           LI +P IL + +  L  +     ++  L   L    + +     E I    + +    +L
Sbjct: 472 LIRNPLILNDFHGALERMICSGPDIAMLRDALL---MVEPQVDLEAILASEIGDAPLVKL 528

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
             Q    +  A       E   + + +   +  A       +    +E+   +A      
Sbjct: 529 FAQAHVTITPAVRRPDNGELARMCLAEEIAKLTARRGHAHEVQDAIDEMNSDVADERLTT 588

Query: 610 EAEKTAILIS 619
              ++   ++
Sbjct: 589 RLAQSIAAMN 598


>gi|163747452|ref|ZP_02154804.1| DNA primase [Oceanibulbus indolifex HEL-45]
 gi|161379305|gb|EDQ03722.1| DNA primase [Oceanibulbus indolifex HEL-45]
          Length = 659

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 206/612 (33%), Positives = 309/612 (50%), Gaps = 25/612 (4%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           ++L     +S ++G+ V WD RK+N  KGD WA CPFH EK+ SFH +D KGFYYCF CH
Sbjct: 2   EELRDRASLSQVVGRKVIWDNRKSNQGKGDMWAPCPFHQEKSASFHVDDRKGFYYCFGCH 61

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
            KGD +SF+      SF+E+V+ +A   G+P+P  DP+ + K   +T L  ++E A  +F
Sbjct: 62  AKGDAISFVRETENVSFMEAVEIIAREVGMPVPKQDPRAQAKSDRRTQLAEVMEQAVQWF 121

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
              L+         YL +RG+   A   +++G+APD+   L + L+ KG  ++ I  AGL
Sbjct: 122 RLQLRTGAAGPARDYLAKRGLSEKAQAHWEIGFAPDNWQGLWDALKAKGVEDDLIFGAGL 181

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
                     YD FR R++FPIR +RG+ IAFGGR +   +  KYLNSPET LF KG++L
Sbjct: 182 AKPSTKGGRPYDTFRGRIMFPIRDARGRAIAFGGRAMDPNDKAKYLNSPETELFDKGRSL 241

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           YN   A     +             +I+ EGYMDV++L  AG +  V+ LGTA+TE QL+
Sbjct: 242 YNVKDARAAAGR----------GQPLIVAEGYMDVIALHGAGFEGAVAPLGTAITENQLQ 291

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
           +LW+++P  ++  DGD  G RAA + IDL L  L  G  + F ++  G+DPD  +R  G 
Sbjct: 292 MLWRIAPEPIITLDGDAAGQRAALRLIDLALPLLEAGQSLRFAVMPEGQDPDDLLRAQGA 351

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
            A +KL+  +LP+V +LW+RETE + F++P+ +A L+  L+  I  I+D  +R +Y Q I
Sbjct: 352 GALQKLLDSALPMVKLLWQRETEGKVFDSPERKAALDKSLREKIKLIRDPSIRSHYGQEI 411

Query: 429 RDRLQQLFQKYITEH----------SGYGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLS 477
           +D    LF+                        K         P      S+LV      
Sbjct: 412 KDLRWDLFRPQKPRADFRPVGGRGPGKGVGKGGKGGNWGAPLAPLASTKASALVAMSDDQ 471

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
               LREA +L+ L   P +++     L  +   + +  +L   L       +  L EEI
Sbjct: 472 VGLHLREAVILVALAGCPQLIETFETGLEGMACTDPDHARLRDLLLRFGHASEEVLREEI 531

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      E L+ +  Q   A         N+   R    + LA     R L+ +  E
Sbjct: 532 SYSLGW----ETLENIKAQRHVAITPCIRKPGNVEMTRMTVAEELAKLDAARGLNEEIAE 587

Query: 598 IEKQIAQVTAKG 609
             + ++    +G
Sbjct: 588 AVEDLSGPADEG 599


>gi|297559738|ref|YP_003678712.1| DNA primase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296844186|gb|ADH66206.1| DNA primase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 623

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 153/645 (23%), Positives = 275/645 (42%), Gaps = 39/645 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +    PI+++IG+Y+       NA  G     CPFHDEK+PSF+   SK  
Sbjct: 4   RIRDEDIALVRERAPIADVIGEYLQL----RNAGGGSLKGLCPFHDEKSPSFNVTPSKNL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118
           +YCF C   GD +SFL  +   SF E+V+ LA  AG+ L   +            +  L+
Sbjct: 60  WYCFGCGEGGDTISFLQRIDSLSFTEAVETLARQAGITLRYEEGGRSAARHDTGKRQRLL 119

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
                A +F+   L +        +LDERG +    E F LGYAP    +L  HLR+KGF
Sbjct: 120 DAHRAAAEFYAEQLLSPGAVTARRFLDERGFNRAHAEHFGLGYAPAGWENLTAHLRRKGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237
           ++ +++E GL         +YDRFRNRL++PIR   G+V+ FG R L    +  KYLNSP
Sbjct: 180 TDAELVEGGLASQ--GRRGAYDRFRNRLLWPIREVTGEVVGFGARKLDPEEDGPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ +FHKG+ LY    A   + +              ++VEGY DV++   AG    V++
Sbjct: 238 ESPVFHKGRLLYGLDLAKRNIAR----------EGKAVIVEGYTDVMACHLAGEDTAVAT 287

Query: 298 LGTALTEYQLRLLWKL-------SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GT+  E  +++L ++       S R+V  FDGD  G +AA +A           +    
Sbjct: 288 CGTSFGEDHVKILRRMLLGRTGQSGRVVFTFDGDKAGQKAAVRAFAEEHGFA---SETFV 344

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP      +G  A   L+ ++ PL + + +   E+   +TP+ R         
Sbjct: 345 AVQPDGLDPCDLRLQHGPQAVVDLVKDAAPLYEFMIRNVMESYDLSTPEGRMAALDAAAP 404

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  I+D+ +R  Y + +   +  L + ++           +      +  P++ +    
Sbjct: 405 VVASIRDEGVRRDYGRNLDRWIGILDEAFVLRRVNQHMRGARGRGPGPRTAPARPVPTPD 464

Query: 471 LVKG--KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
             +    L      RE   L   +  P++    +    +  +   + + +   + +    
Sbjct: 465 AQEAPYNLGDPSVQRERQALKIALQFPSLAV-GFDAFTEEDFTVPQHRAVLGLITAAGGV 523

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                P      L E    +  +    ++    L          ++ + Y + +    + 
Sbjct: 524 AAAHDPAAWVNGLREAAPNDTQRDFLTRLVVEQLEFY------GELDEHYARQILGTVKT 577

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             ++R++  +  +++++    + E+   L++ L  +  Q   ++ 
Sbjct: 578 HSINRRESNLRSELSRLEGTPQVEEQQRLLTELMALQQQKRALQE 622


>gi|126727889|ref|ZP_01743717.1| DNA primase [Rhodobacterales bacterium HTCC2150]
 gi|126702830|gb|EBA01935.1| DNA primase [Rhodobacterales bacterium HTCC2150]
          Length = 647

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 202/611 (33%), Positives = 312/611 (51%), Gaps = 17/611 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L     ++ ++G+ V WD+RK+N  KGD W+ CPFH+EKT SFH +D KG
Sbjct: 1   MSLPPGFLDELRTRTSLTQVVGRKVTWDQRKSNQAKGDMWSPCPFHEEKTASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD L F+      SF+E+V+ LA   G+P+P  DP+ +KK      L  +
Sbjct: 61  FYYCFGCHAKGDALGFIRETENVSFMEAVEILARENGMPMPARDPQAQKKADRNAQLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  F+   L+         YL  RG+D  A   F +G+AP+ R  L  HL  K  + 
Sbjct: 121 MEMAVQFYRLQLQTGAAGNARDYLLRRGLDEAAQARFDIGFAPEQRQILFSHLTGKNVAP 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + IIEAGL    D+    YDRFR R++FPIR +RG+ I  GGR + +    KYLNSPET 
Sbjct: 181 DLIIEAGLAAKPDDGGAPYDRFRGRILFPIRDARGRAIGLGGRAMDQNARAKYLNSPETP 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG++LYN   A     K           + +I+ EGYMDV++L +AG    V+ LGT
Sbjct: 241 LFDKGRSLYNHGPAREAAGK----------GAPLIVAEGYMDVIALVEAGFGAAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QL L+W++SP  ++  DGD  G+RAA + ID+    +  G  + F ++  G+DPD
Sbjct: 291 AVTENQLALMWRISPEPIIALDGDKAGIRAAMRLIDIAFPLIEAGKSLRFCIMPEGQDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I+  G  A + L+ ++ P+V++LW+RET+ ++F++P+ RA L+  L++ +  IKD  +
Sbjct: 351 DVIKAQGAGAMQALLDQAEPMVNLLWRRETDGKNFDSPERRAALDKSLRDALMLIKDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGR--YWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
           + +Y +A+++   +LF     +           K   ++    P      S L       
Sbjct: 411 QRHYGEAVKNLRWELFDPRQGKTPQKREWTPGGKGKWNKAPTKPLASTKTSLLASAGAGV 470

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +  LREA +L  LI HP+I+ E   ++  +     E   +   L     +       EI 
Sbjct: 471 EDQLREAVILAALICHPSIIPEFEADMDTLHMS-PEHAGIRDALLRLPTDTDTESAREII 529

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                +     L +L                N     +   + LA     R    +  E 
Sbjct: 530 A----QEHRSALDKLFALNHVQIAPPVRNTENHSQAAKCVAEELAKLTSIRGAELEISEA 585

Query: 599 EKQIAQVTAKG 609
            + +  +  +G
Sbjct: 586 AEDLQGIADEG 596


>gi|221639824|ref|YP_002526086.1| DNA primase [Rhodobacter sphaeroides KD131]
 gi|221160605|gb|ACM01585.1| DNA primase [Rhodobacter sphaeroides KD131]
          Length = 643

 Score =  405 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 199/646 (30%), Positives = 318/646 (49%), Gaps = 21/646 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   +P+S ++G+ V WD RK+N  KGD+WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPPGFLDELRNRVPLSQVVGRKVTWDLRKSNQGKGDFWAPCPFHQEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD ++F+       F+E+V+ LA  AG+ +P  DP+  +K   ++ L  +
Sbjct: 61  FYYCFGCHAKGDAIAFVKDTENVGFMEAVEILAREAGMAMPARDPRAAEKADRRSQLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  F+   L+         YL  R +     E F +G+AP+ R +L + L  KG + 
Sbjct: 121 MEEAVKFYRLQLRTGAAAAARDYLARRRLSPEGQERFGIGFAPEGRQALFQALTGKGIAP 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++EAGL    +     YDRFR R+IFPIR +RG+ I+ GGR +      KYLN PET 
Sbjct: 181 DLLVEAGLCARPEEGGAPYDRFRGRIIFPIRDARGRAISLGGRAMDPAARAKYLNGPETP 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+NLYN   A     K             +++ EGYMDV++L +AG +  V+ LGT
Sbjct: 241 LFDKGRNLYNVGPAREAAGK----------GQPLVVAEGYMDVIALSEAGFRATVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QLRL+W++    V+  DGD  G+RAA + +DL L  L  G  + F +L  G DPD
Sbjct: 291 AITEDQLRLMWRIHSEPVIALDGDAAGIRAALRVVDLALPLLEAGQGLRFAVLPPGLDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G +A  +++  + P+V +LW+RETE   F++P+ RA L+  L+  +  I D  +
Sbjct: 351 DLIRAEGASAMGRVLEAAQPMVGLLWRRETEGHVFDSPERRAALDKRLRAAVQRIADPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK-K 479
           R +Y   +     ++F   +   +    + +   R      P      S L      + +
Sbjct: 411 RRHYGDELNRLRMEIFGTSVPRRA----FHRGGKREPLAVAPHPSTRASLLATAAGERIE 466

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             +R   +L T   HP ++ E    L  +   + + + L   L +           +  +
Sbjct: 467 EEMRLGVILATCALHPTLIHEFETALEALELSDPDHRALHRVLLAAAG----MAEADTAR 522

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                  G  L++L          S     ++   R    + LA  +  R   ++ EE  
Sbjct: 523 GAIRAEAGPALERLLALTHVRICPSVRHPGDLEMARMCLAEELAKLEARRGARQEIEEAV 582

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           + +A +  +G   + +      H    +  +++    + E    +S
Sbjct: 583 EDLAGLVDEGLTWRLSQAAEARH--RAERARLDDSSDLGEDRAALS 626


>gi|254420395|ref|ZP_05034119.1| DNA primase catalytic core, N-terminal domain family [Brevundimonas
           sp. BAL3]
 gi|196186572|gb|EDX81548.1| DNA primase catalytic core, N-terminal domain family [Brevundimonas
           sp. BAL3]
          Length = 624

 Score =  405 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 201/638 (31%), Positives = 319/638 (50%), Gaps = 25/638 (3%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            +   FI +L   +  S++IG+ V   R+       +Y    PF  EK+PSF  ND KGF
Sbjct: 6   RFDERFIDELKARLRPSDVIGRTVKLKRQGR-----EYVGLSPFSKEKSPSFFVNDDKGF 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           ++ FS    GD +SFL      SF+E+VQRLA  AG+ LP  DPK  ++E+ +  L   +
Sbjct: 61  FHDFSSGKHGDIISFLQETERLSFVEAVQRLAGEAGMQLPAEDPKEAEREQKRQGLSDWM 120

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           ++A  +F  +L+    K    YL++RG+     E F LGYAP+ R  L++ L Q+G    
Sbjct: 121 DLAQKWFAANLRRTPGKAAREYLEKRGLPEDQWERFGLGYAPNDREGLKQALVQRGARPA 180

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           +++EAGLLI  ++    YDRFR+RL+FPI  +RG++++FGGR ++  +  KYLN PE+ L
Sbjct: 181 ELVEAGLLISPESGGQPYDRFRDRLMFPILDARGRIVSFGGRAMNPDDRAKYLNGPESPL 240

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHKG  LY    A   L    R D        II+VEGYMDV++  +AG+   V+ +GTA
Sbjct: 241 FHKGATLYGLPEARRILGAESRNDQA------IIVVEGYMDVIACQRAGLP-AVAPMGTA 293

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE Q+  LW++S   VLCFDGD  GLRAAY+AI+  L  L  G    F LLS G+DPD 
Sbjct: 294 LTEEQMERLWRVSHEPVLCFDGDAAGLRAAYRAIERSLPLLKAGRSFRFSLLSGGQDPDD 353

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +R  G  A  + + ++    ++L++RE +    +TP+ +A  +  L+   + I+D+ L 
Sbjct: 354 ILRDKGAPALRQALADTHGFAEVLFRREQDVEPLDTPERKAGFKARLRTAASAIQDKDLA 413

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y + + DR   LF +             +            + ++ +     L +  S
Sbjct: 414 EQYRRDLFDRFDALFPRAPQRAPW---TPGQGRGRFGPPPKLGQTVEGAQAMQSLFRAVS 470

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
              AAL    I+    L +  +E++   + +  L+ L   L    +  +      +  RL
Sbjct: 471 PVAAALAYAAIDDIERLDDHLEEVSVQGFGDAALEGLAQELVRLRLSGQPSDAAVVRHRL 530

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            + GF  LLK++++    +G    +++  + + R  + +   L      LSR  E  ++ 
Sbjct: 531 RDSGFEPLLKEIEKAASKSGASFLSSDLTVAESRAHWLKVFGLMTHLAALSRAIETAKQD 590

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q T           I  L  +  +   I    A  +
Sbjct: 591 MGQGTG----------IDALVRLKAERDAITRSFAAPD 618


>gi|307295454|ref|ZP_07575290.1| DNA primase [Sphingobium chlorophenolicum L-1]
 gi|306878493|gb|EFN09713.1| DNA primase [Sphingobium chlorophenolicum L-1]
          Length = 623

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 202/642 (31%), Positives = 302/642 (47%), Gaps = 23/642 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+    F+ +L     +S LIG+ V   +        +Y ACCPFH+EKTPSF  ND KG
Sbjct: 1   MSLSPAFLDELRARTSLSTLIGRTVKVQKAGR-----EYKACCPFHNEKTPSFTINDEKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF C   GD + +++   G  F+E+V+ LA  AG+ +P  DP+  K+ +    L  +
Sbjct: 56  FYHCFGCGAHGDAIRWMTDHRGLPFMEAVKELAQAAGMEVPAPDPRAAKRAEQAKGLHDV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A  FF   L          Y+  RGI +     F  G++PD R  L+  L+  G   
Sbjct: 116 MAAAQAFFEEQLGGIEGAEARAYVQRRGISAATARSFGFGFSPDGRGRLKAALKDFGEP- 174

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +IEAGLLID D    SYDRFR RL+ PIR  RG+VIAFGGR L  GE  KYLNSP+T 
Sbjct: 175 -LLIEAGLLIDPDGERDSYDRFRGRLMLPIRDIRGRVIAFGGRILGAGEP-KYLNSPDTP 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+ LYN   A    +++ R          II+VEGYMDV++L QAG     + LGT
Sbjct: 233 LFDKGRTLYNIDRASPASRQAGR----------IIVVEGYMDVIALAQAGFGEAAAPLGT 282

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE+Q+  LWK++   +LCFDGD  G +AA +A    L  L PG  + F  L  G+DPD
Sbjct: 283 ALTEHQIERLWKMADVPILCFDGDSAGQKAAMRAATRALPLLKPGMSLAFATLPGGQDPD 342

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  A E ++  + PLV+ LWK E      +TP++RA L+  L    + I    +
Sbjct: 343 DLIRAQGPQAMESVLAAAEPLVERLWKFEQAAAPLDTPEQRAALKQRLSAITDAIGHPDV 402

Query: 421 RYYYSQAIRDRLQQLFQK----YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           R +Y  A R+R   LF            G           +    P      S       
Sbjct: 403 RAHYVHAFRERYDALFFARQAFQPRHRRGGSARSGWQRDRKGNWKPPLPPAGSEARAIGA 462

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           S        A+L +L+ HP  +    + L+ +R  +  L +L   + +    ++      
Sbjct: 463 SGMEQRLLKAILASLLRHPEQIALHRETLSGLRIADGALAELMKAMIAASFGKETVETGG 522

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +   L +     + K + R           ++A+   V++   +A+ +  +   L     
Sbjct: 523 LLTILGQGEVYNMAKGMLR-ADTFTFTPHRSKADSDRVQRDLDEAIRVMAQGPELEAALA 581

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           E  ++      +    +   +  +  +   ++ ++   E  I
Sbjct: 582 EATRRARDDLNEDSFAEQQRVRELKLDHDRRLAELAQSEDSI 623


>gi|148553356|ref|YP_001260938.1| DNA primase [Sphingomonas wittichii RW1]
 gi|148498546|gb|ABQ66800.1| DNA primase [Sphingomonas wittichii RW1]
          Length = 623

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 195/646 (30%), Positives = 313/646 (48%), Gaps = 26/646 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+    F+ +L   + +S LIG+ V   +        ++ ACCPFH+EK+PSF+ ND KG
Sbjct: 1   MSLSPQFLDELRARVTLSTLIGRSVKLVKAGR-----EFKACCPFHNEKSPSFYVNDDKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF C   GD + FL+   G +FI++V+ LA  AG+ +P  DP+  ++ ++Q  L  +
Sbjct: 56  FYHCFGCGAHGDAIRFLTEAKGLTFIDAVKELAQGAGMEVPAPDPRAAQRNEMQAGLHDV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A  +F   L          YL  RGID   ++ F +G+APDSR  LR  L+  G ++
Sbjct: 116 MAAAASWFQEQLGGIAGAEARAYLQRRGIDERLVKKFGIGFAPDSRGKLRTALKSFGDAK 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
                  +L++       YDRFR R++ PI+  RG+VIAFGGR L KGE  KYLNSP+T 
Sbjct: 176 LIETGLLILVE---DKEPYDRFRGRVMIPIQDQRGRVIAFGGRILDKGEP-KYLNSPDTP 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+ L+N   A    +K+ R          +I VEGYMDV++L +AG+   V++ GT
Sbjct: 232 LFDKGRTLFNIERASAASRKANR----------VIAVEGYMDVIALAKAGIDEAVAANGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL  +W+++   +LCFDGD  G +AA +A    L  + PG  + F LL  G+DPD
Sbjct: 282 ALTEAQLERMWRMTEIPLLCFDGDKAGQKAAVRAAQRALPMIAPGRTLRFALLPGGQDPD 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G  A E+++ E++ L ++LW+ E E +  +TP+ RA L   L +    I+D+ +
Sbjct: 342 DLVKSGGVRAVEQVLDEAISLDELLWRAEYEAQPLSTPEARAGLRKRLGDLAGSIQDRDV 401

Query: 421 RYYYSQAIRDRLQQLF---QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           R  Y    R R  +LF   Q+   E +      ++  R      P       +      S
Sbjct: 402 RELYQAEFRRRFDELFGSAQRRPFERNFQPFQPRQQRRPGQPWKPEPLPPSRAAHAVNKS 461

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
               +   A++  L+  PA+     + +  ++  +  L +L +  F           E +
Sbjct: 462 GVNPMVTRAVMAGLLRFPALFSSHMEAIGQLQLGDERLDRLRAEAFEAGFSGGPLEKEGL 521

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L E G G ++++L +             A+     +    A+       LL     E
Sbjct: 522 ETILAEAGLGAVVEEL-KATNALAFSFLRGNADPDRAMRDLSAAIEAMAARPLLDAALRE 580

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
             +++         E+   L++        +  +   E   +G G 
Sbjct: 581 ATERLGMAADDAGLEEQRRLLAAREAADRALTDLALGE---DGGGA 623


>gi|146276890|ref|YP_001167049.1| DNA primase [Rhodobacter sphaeroides ATCC 17025]
 gi|145555131|gb|ABP69744.1| DNA primase [Rhodobacter sphaeroides ATCC 17025]
          Length = 654

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 199/601 (33%), Positives = 304/601 (50%), Gaps = 18/601 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   +P+S ++G+ V WD RK+N  +GD+WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPPGFLDELRNRVPLSQVVGRKVTWDLRKSNQGRGDFWAPCPFHQEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD + F+       F+E+V+ LA  AG+ +P  DP+  +K   ++ L   
Sbjct: 61  FYYCFGCHAKGDAIGFVKETENVGFMEAVEILAREAGMTMPARDPRAAEKADRRSQLAEA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  F+   L+         YL  R + +   E F +G+APD R +L + L  KG + 
Sbjct: 121 MEEAVKFYRLQLRTGAASAARDYLVRRRLSNEGQERFGIGFAPDGRQALFQALTGKGIAA 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++EAGL    ++    YDRFRNR+IFPIR +RG+ I+ GGR +      KYLN PET 
Sbjct: 181 DLLVEAGLCARPEDGGAPYDRFRNRIIFPIRDARGRAISLGGRAMDPAARAKYLNGPETP 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+NLYN   A     K             +++ EGYMDV++L +AG    V+ LGT
Sbjct: 241 LFDKGRNLYNIGPAREAAGK----------GQPLVVAEGYMDVIALSEAGFGATVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QLRL+W++    V+  DGD  GLRAA + +DL L  L  G  + F +L  G DPD
Sbjct: 291 AVTEDQLRLMWRIHSEPVIALDGDAAGLRAALRVVDLALPLLEAGQGLRFAVLPPGLDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  A  ++I  + P+V +LW+RETE + F++P+ RA L+  L+  +  I D  +
Sbjct: 351 DLIRSEGAAAMARVIEGAQPMVSLLWRRETEGQIFDSPERRAALDKRLRAAVQRIADPTI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV--KGKLSK 478
           R +Y   +      LF           R + +  R     G    + ++SL+      + 
Sbjct: 411 RRHYGDELNRLRMDLFGSATPR-----RAFHRGGRREAGAGMQVSVARNSLLARAASEAA 465

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-LPEEI 537
           +  L+EA LL  L+ HP ++      +  + +     +++W  L    +           
Sbjct: 466 EEQLQEAVLLAALVTHPGLVARFEAGIEAVDFLGEGHRQVWRALMRHALPGMEVGDLRAR 525

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                  G  +LL +   ++          +     VR+   +  A     R +    E+
Sbjct: 526 IAAEAGEGLEKLLSESHLRIAPGAREGDEDDLAEQCVREALAKKAARIAARREIEEALED 585

Query: 598 I 598
           I
Sbjct: 586 I 586


>gi|310816222|ref|YP_003964186.1| DNA primase [Ketogulonicigenium vulgare Y25]
 gi|308754957|gb|ADO42886.1| DNA primase [Ketogulonicigenium vulgare Y25]
          Length = 673

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 198/598 (33%), Positives = 313/598 (52%), Gaps = 18/598 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   + ++ ++G+ V WDRRK+N  KGD WA CPFH EK+ SFH +D KG
Sbjct: 28  MSLPAGFLDELRGRLSLAQVVGRKVVWDRRKSNPGKGDMWAPCPFHQEKSASFHVDDRKG 87

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           +YYCF CH KGD +SF+       F E+++ LA  AG+ +P  DP+ +++   +T L  +
Sbjct: 88  YYYCFGCHAKGDAISFVRETENVGFTEAIEILAREAGMQVPARDPQSQQRADRRTQLSDV 147

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E    F+   LK    +    YL +RG+   A + + LGYAP  R  L  HLR KG + 
Sbjct: 148 MEQVVQFYRLQLKTQSGEGARAYLQKRGLSPAAWDRWDLGYAP--RAGLFHHLRDKGVAL 205

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++++G+++  D+    +DRFR+R+IFPIR +RG+ I+ GGR +      KYLN PET 
Sbjct: 206 DLMVDSGMVVVPDDGREPFDRFRDRIIFPIRDARGRAISLGGRAMDPAAPAKYLNGPETP 265

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV-QNVVSSLG 299
           LF KG+NL+N   A     K             +I+ EGYMDV++L +AG     V+ LG
Sbjct: 266 LFDKGRNLFNMGPAREAAGK----------GKPLIVAEGYMDVIALSEAGFGAAGVAPLG 315

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA+T  QL L+W+++   ++  DGD  G+RAA + +DL L  L+ G  + F LL  G+DP
Sbjct: 316 TAVTADQLALMWRITDEPLIALDGDTAGMRAAMRVVDLALPLLVAGKGLRFALLPEGQDP 375

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D  I+  G  A + +I  ++P+V ++W+RETE +  ++P+ RA L+  L+  I  I D  
Sbjct: 376 DDLIKARGAPAMQAVIDAAMPMVRLMWQRETEGKVIDSPERRAALDKQLRALIMTITDAS 435

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           +R +Y   + +RL+Q     + E       W+   +     GP+     S L     S +
Sbjct: 436 IRKHYGDEV-NRLRQSLYGPVAEAKPGKLQWRPGKKATAPSGPTAAARASMLA--GSSDQ 492

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             LR A +L TL++ P IL E   EL  +   + + + L + +       +  L   I  
Sbjct: 493 ERLRVAVILATLLSCPEILPEFELELERMACHDPDHRDLRAAILR--NAHQPDLRAAIED 550

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            L       L  +    +  A   +   E   + + +   +  A     R +    E+
Sbjct: 551 SLGHMPLERLFAERHVAISPAVRRAGDAEVARLCLAEELAKLNARRGHAREIEEALED 608


>gi|297180870|gb|ADI17075.1| DNA primase (bacterial type) [uncultured alpha proteobacterium
           HF0010_30A23]
          Length = 652

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 188/585 (32%), Positives = 287/585 (49%), Gaps = 20/585 (3%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F+ ++   + +S+++G  V   R+       ++ ACCPFH+EKTPSF+ N+ KGFY
Sbjct: 39  IPPAFLDEIRTRLDLSDVVGARVKLQRKGR-----EWTACCPFHNEKTPSFYVNNEKGFY 93

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GDH+ F+    G +FIE+V+ LA  AG+ +P  DP   +K +    L   + 
Sbjct: 94  HCFGCGAHGDHIGFVMNHDGQTFIEAVETLAGQAGLDMPKADPDAARKAERAKGLKEAMV 153

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A   +  +L          Y+D+RG+    +E F LGY+PD+R  L + L  +GFS + 
Sbjct: 154 AAVKAYQEALNQPDGAVARAYIDKRGLTPETVERFALGYSPDARDWLFKKLIAQGFSAQV 213

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +I+A L    ++    +D FR RL+FPI   +G  +AFGGR L +GE  KYLNSP+T +F
Sbjct: 214 LIDAALAKAPEDGRPPFDMFRGRLMFPIWDRQGNPVAFGGRILGEGEP-KYLNSPDTAIF 272

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           HKG+ LY    A                   I++VEGYMD ++L QAGV+N V+ LGTAL
Sbjct: 273 HKGQLLYGHHLARKSAH----------DRGEILVVEGYMDAIALGQAGVENAVAPLGTAL 322

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE  LRLLWK+ P  ++C DGD  G RAA +  +  L  L  G  V F  L  G+DPD  
Sbjct: 323 TEDHLRLLWKMVPSPIVCLDGDAAGQRAARRTAERALPLLRAGKSVKFATLPEGQDPDDL 382

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++  G  A + ++ +S  L   +W+ E +    N  ++RA L   +   +  ++D  L  
Sbjct: 383 LKHGGLRALQTVLSQSETLPAAIWRWERQAMLRNDAEQRAALWSRISAGLKSVEDSSLNT 442

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKK-NARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                +  R +  F  +     G GR W++ N        P+  L Q    +        
Sbjct: 443 ALEADMIGRFEASFGHHPFRKQGSGRQWQRQNGAKASWNRPATGLSQPGNDRVSALDTTG 502

Query: 482 LREAA---LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           L       L    +NHP +L    + LA +   + +L +    L     ++     E +H
Sbjct: 503 LARRQYEVLFAAFLNHPDLLDLYGENLATLTMLDVDLAQFRDALVQALFQEVTLDSEHLH 562

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
             L ERG   ++K+L           A  +A   +V +G +   A
Sbjct: 563 PHLSERGLDSMVKRLTGPDTQLHAGFAKPDARKDEVIEGLETLFA 607


>gi|126462811|ref|YP_001043925.1| DNA primase [Rhodobacter sphaeroides ATCC 17029]
 gi|126104475|gb|ABN77153.1| DNA primase [Rhodobacter sphaeroides ATCC 17029]
          Length = 643

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 200/646 (30%), Positives = 321/646 (49%), Gaps = 21/646 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   +P+S ++G+ V WD RK+N  KGD+WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPPGFLDELRNRVPLSQVVGRKVTWDLRKSNQGKGDFWAPCPFHQEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD ++F+       F+E+V+ L   AG+ +P  DP+  +K   ++ L  +
Sbjct: 61  FYYCFGCHAKGDAIAFVKDTENVGFMEAVEILTREAGMAMPARDPRAAEKADRRSQLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  F+   L+         YL  R +     E F +G+APD+R +L + L  KG + 
Sbjct: 121 MEEAVRFYRLQLRTGAASAARDYLARRRLSEEGQERFGIGFAPDARQALFQALTGKGIAP 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++EAGL    ++    YDRFR R+IFPIR +RG+ I+ GGR +      KYLN PET 
Sbjct: 181 DLLVEAGLCARPEDGGAPYDRFRGRIIFPIRDARGRAISLGGRAMDPAARAKYLNGPETP 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+NLYN   A     K             +++ EGYMDV++L +AG +  V+ LGT
Sbjct: 241 LFDKGRNLYNAGPAREAAGK----------GQPLVVAEGYMDVIALSEAGFRATVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QLRL+W++ P  V+  DGD  G+RAA + +DL L  L  G  + F +L  G DPD
Sbjct: 291 AITEDQLRLMWRIHPEPVIALDGDAAGIRAALRVVDLALPLLEAGQGLRFAVLPPGLDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G +A  +++  + P+V +LW+RETE   F++P+ RA L+  L+  +  I D  +
Sbjct: 351 DLIRAEGASAMGRVLEAAQPMVGLLWRRETEGHVFDSPERRAALDKRLRAAVQRIADPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK-K 479
           R +Y   +     ++F   +   +    + +   R      P      S L      + +
Sbjct: 411 RRHYGDELNRLRMEIFGTSVPRRA----FHRGGKREPLAVAPHPSTRASLLATAAGERIE 466

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             +R   +L T   HP ++ E    L  +   + + + L   L +           +  +
Sbjct: 467 EEMRLGVILATCALHPTLIHEFETALEALELSDPDDRALHRVLLAAAG----MAEADTAR 522

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            +     G  L++L          S     ++   R    + LA  +  R   ++ EE  
Sbjct: 523 GVIRAEAGPALERLLALTHVRICPSVRHPGDLEMARMCLAEELAKLEARRGARQEIEEAV 582

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           + +A +  +G   + +      H    +  +++    + E    +S
Sbjct: 583 EDLAGLVDEGLTWRLSQAAEARH--RAERARLDDSSDLGEDRAALS 626


>gi|163733985|ref|ZP_02141426.1| DNA primase [Roseobacter litoralis Och 149]
 gi|161392521|gb|EDQ16849.1| DNA primase [Roseobacter litoralis Och 149]
          Length = 632

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 207/590 (35%), Positives = 314/590 (53%), Gaps = 17/590 (2%)

Query: 21  IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80
           +G+ V WD RK+N  KGD WA CPFH EKT SFH +D KGFYYCF CH KG+ +SF+   
Sbjct: 2   VGRKVMWDARKSNQGKGDMWAPCPFHQEKTASFHVDDRKGFYYCFGCHAKGNAISFVRET 61

Query: 81  LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRL 140
               F+E+V+ LA  AG+P+P  DP+ ++K   +T L  ++E+A ++F   L        
Sbjct: 62  ENVGFMEAVEILAGEAGMPMPERDPQAQQKADRRTQLAEVMELAVNYFRLQLNTGAAAEA 121

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
             YL+ RG+ S  +E +++GYAPD    L +HL+ K   +E I+ AGL          YD
Sbjct: 122 RNYLERRGLRSETLERWEIGYAPDQWQGLWDHLKAKNVEDELILAAGLAKPSTKGGKPYD 181

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260
            FR R+++PIR +RG+ IAFGGR +   ++ KYLNSPET LF KG++LYN   A     K
Sbjct: 182 TFRGRIMYPIRDARGRAIAFGGRAMDPNDNAKYLNSPETELFDKGRSLYNQKEARTAAGK 241

Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320
                        +I+ EGYMDV++L  AG    V+ LGTA+TE QL++LW++SP  ++ 
Sbjct: 242 ----------GQPLIVAEGYMDVIALDSAGFNASVAPLGTAITESQLQMLWRISPEPIVA 291

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380
            DGD  GLRAA + IDL L  L  G  + F ++  G+DPD  +R  G  A +KL+ E++P
Sbjct: 292 LDGDTAGLRAAMRLIDLALPLLEAGRSLRFAIMPAGKDPDDLLREQGVAALQKLLDEAMP 351

Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
           +V +LW+RETE   F++P+ +A LE  L++ +  I+D  ++ +Y+QA++D   QLF+   
Sbjct: 352 MVQLLWQRETEGGVFDSPERKATLEKALRDKVMLIRDPSIQSHYAQALKDMQWQLFRPQR 411

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS-LREAALLLTLINHPAILQ 499
             +  + +   +         P      S+L   +       LREA LL      P++++
Sbjct: 412 KNNPVWQK--NRRQWGSSPATPLTSTKASALASAQTIDVTEALREAVLLAAFATCPSVIE 469

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +   +L  +   +   Q L   L             EI   + E      L+ L  Q   
Sbjct: 470 DFESDLERMNCTDRTHQALRDLLLR----NMSATESEIRALVSETLGPNTLENLLAQSHV 525

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           A +    T  +   VR    +  A     R L+ +  E  + ++ +  +G
Sbjct: 526 AIVPCIRTPGDAEKVRMTVAEEFAKLSATRGLNAEIAEASEDMSGLADEG 575


>gi|294011420|ref|YP_003544880.1| DNA primase [Sphingobium japonicum UT26S]
 gi|292674750|dbj|BAI96268.1| DNA primase [Sphingobium japonicum UT26S]
          Length = 631

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 205/650 (31%), Positives = 310/650 (47%), Gaps = 31/650 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+    F+ +L     +S LIG+ V   +        +Y ACCPFH+EKTPSF  ND KG
Sbjct: 1   MSLSPAFLDELRARTSLSTLIGRTVKVQKAGR-----EYKACCPFHNEKTPSFTINDEKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF C   GD + +++   G  F+E+V+ LA  AG+ +P  DP+  K+ +    L  +
Sbjct: 56  FYHCFGCGAHGDAIRWMTDQRGLPFMEAVKELAQAAGMEVPAPDPRAAKRAEQAKGLHDV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A  FF   L          YL +RGI +   + F  G++PD R  L+  L   G   
Sbjct: 116 MAAAQGFFEEQLGGIEGAEARAYLQKRGISAATAKAFGFGFSPDGRGRLKAALNVFGEP- 174

Query: 181 EKIIEAGLLIDGD-------NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             +IEAGLLID D           SYDRFR RL+ PIR  RG+VIAFGGR L  GE  KY
Sbjct: 175 -LLIEAGLLIDPDGAEPDGGRKRDSYDRFRGRLMLPIRDIRGRVIAFGGRILGAGEP-KY 232

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSP+T LF KG+ LYN   A    +++ R          +++VEGYMDV++L QAG + 
Sbjct: 233 LNSPDTPLFDKGRTLYNIDRASPASRQAGR----------VVVVEGYMDVIALAQAGFEE 282

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+ LGTALTE+Q+  LWK++   +LCFDGD  G +AA +A    L  L PG  + F  L
Sbjct: 283 AVAPLGTALTEHQIERLWKMADVPILCFDGDSAGQKAAIRAATRALPLLRPGMSLAFATL 342

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G+DPD  IR  G  A E ++  + PLV+ LWK E      +TP+++A L+  L    +
Sbjct: 343 PAGQDPDDLIRAQGPQAMESVLAAAEPLVERLWKYEQGAAPLDTPEQKAALKQRLSAITD 402

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKY-----ITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
            I    +R +Y  A R+R   LF          +  G G         R    P      
Sbjct: 403 AIAHPDVRAHYVHAFRERYDALFFARAAFQPRHQRGGSGARSGWQRDRRGNWKPPLPPAG 462

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S       S        A+L +L+ HP  +    + LA +R  +  L +L + + +    
Sbjct: 463 SEARAIGASGMEQRLLRAVLASLLRHPEQIALHREMLAGLRIADPVLAELLNAMIAASFS 522

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
           ++    + +   L +     + K + R           ++A+   VR+   +A+ +  + 
Sbjct: 523 KETVETDGLLTILGQGEVYNMAKGMLR-ADTFTFTPHRSKADSDRVRRDLDEAIRVMAQG 581

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
             L     E  ++      +    +   +  +  +   ++ ++   E +I
Sbjct: 582 PELEAALAEATRRATDDLNEDSFAEQQRVRRLKLDHDRRLAELAQSEDII 631


>gi|118591039|ref|ZP_01548439.1| DNA primase [Stappia aggregata IAM 12614]
 gi|118436561|gb|EAV43202.1| DNA primase [Stappia aggregata IAM 12614]
          Length = 648

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 200/645 (31%), Positives = 314/645 (48%), Gaps = 26/645 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +    + ++   + +S+++G+ V WDRRKT   KGDYWACCPFH EK+PSFH +D + 
Sbjct: 1   MRFEPRLLDEIRARLTLSDVVGRRVTWDRRKTQPGKGDYWACCPFHQEKSPSFHVDDRRN 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y CF C   GDH +FL    G SF E+V+RLA  AGV LP  DP+  ++EK +  L  +
Sbjct: 61  RYKCFGCGASGDHFTFLCETEGLSFPEAVERLAEQAGVGLPAPDPQAARREKKRAGLADI 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E+A  FF       R      Y  +RG+    +  F+ G+APDSR +L+ +L  +   E
Sbjct: 121 CEMAAQFFQAEFAGPRGDAARAYTQKRGLAQETLREFRFGFAPDSRDALKGYLAAREIPE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +IEAGL+I  ++   SYDRFR RL+ PI   RG+V+AFGGRTLS     KYLNSPET 
Sbjct: 181 AAMIEAGLIIKPEDGRPSYDRFRGRLMIPIHDDRGRVVAFGGRTLSPDGQPKYLNSPETP 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  L+N   A     KS             ++VEGY+D ++L QAG+ +VV+SLGT
Sbjct: 241 LFHKGVMLFNAHRAREPAFKS----------GEAVVVEGYLDAIALWQAGIHHVVASLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A TE Q+  LWK +P  V+CFDGD  G+ AA++AID +   L  G    F  L  G DPD
Sbjct: 291 AFTEDQVVRLWKFAPEPVICFDGDAAGVSAAHRAIDRIFPVLKSGYSFQFCFLPDGMDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I+  G T F   +  +  L +++W RE      +TP+ +A LE    + I  I+D+++
Sbjct: 351 DLIKQRGVTGFHDEVERAQSLFEVVWDREISVSRLDTPERKAALEKRFDDLIGTIRDERV 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y   ++ +L  LF +   +        +     R        +      +   +   
Sbjct: 411 RRRYQLDLKFKLSNLFFEQARQSR------QGGKGGRSGGAAEAGVPLGMARERVSATHD 464

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  +L   +  P +L   ++  + + + N+  ++L   L     + +     E+   
Sbjct: 465 FGTERLVLGLSMRFPYLLDRNFERFSRLPFANDLHRELRDILCRIVDDLEATPIAELTSA 524

Query: 541 LCERGFGELLKQLD---------RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
             E    +++ ++          R    + L                + A   +     L
Sbjct: 525 F-EEPLRDIMGEMMLETIGMQQQRGAEFSALTHRFPLLKSNPPEDFIEAAYLHFLDVLEL 583

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           +  ++E+  ++A    + +      + ++  ++  +  +    EA
Sbjct: 584 NALEDELSSELATADEQLDEHSWMRIQALTQDLSRRREECARDEA 628


>gi|296133799|ref|YP_003641046.1| DNA primase [Thermincola sp. JR]
 gi|296032377|gb|ADG83145.1| DNA primase [Thermincola potens JR]
          Length = 609

 Score =  400 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/637 (27%), Positives = 282/637 (44%), Gaps = 47/637 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P D + ++     I  ++ +Y+   ++  N     Y   CPFH+EKTPSF  +  K  Y
Sbjct: 4   IPDDIVDEIRQRNDIYTIVSEYLRLKKQGRN-----YVGLCPFHNEKTPSFTVSPEKQMY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRLI 121
           YCF C   G+ +SF+  +   SF E+V+ LA  AG+ +P   +    +K + +    RL 
Sbjct: 59  YCFGCGAGGNVISFIMQIENLSFPEAVKFLADKAGIVIPEGKNSAAAQKLRQREKAYRLN 118

Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           E+  +F+H+  L +        YL +RGID   IE F+LG+AP    SL   L+++G+S 
Sbjct: 119 ELVKNFYHYILLNHDIAAGAREYLLKRGIDRATIEKFQLGFAPPGWDSLLGFLQKRGYSP 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + +   GL+         YDRFRNR++FPI   +  VI FGGR L      KYLNSPET 
Sbjct: 179 DYLEAQGLVTKRSTGTGYYDRFRNRVMFPIWDHKNNVIGFGGRVL-DDSLPKYLNSPETS 237

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K KNLY    A+  ++              +++VEGYMDV++  Q GV NVV+SLGT
Sbjct: 238 VFNKSKNLYGINFAIPAIR----------EQEHVVIVEGYMDVITCHQYGVSNVVASLGT 287

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+T  Q ++L + +P + + +D D  G+ A  + +++       G RV  V +  G+DPD
Sbjct: 288 AMTREQGKILVRYAPNVYIAYDADTAGVAATLRGLEI---LQDAGCRVKVVTIPDGKDPD 344

Query: 361 SFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             IR  G  +F +L    S  L++    +  E    NT + +  +   L   I  I  + 
Sbjct: 345 ELIRKKGPESFTRLIREGSKSLIEYKLAKGMEKFDCNTIEGKIGIVGELIPNIIRIPSEI 404

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-----------KGPSQRLMQ 468
            R    + I   L         E   Y + ++KN    D+           K P      
Sbjct: 405 EREEQIKLISTTLGISSHSLWGEIKKYQQKFRKNMAKWDKITLERDNNTEFKAPKGTPKV 464

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN-NELQKLWSFLFSDFV 527
           ++  +          E  L+  LI H  +     +EL  + + +  E   + ++L     
Sbjct: 465 TNPEQVIKKSARRQAEDNLIRLLITHQELYGRVKEELG-VNFTDVPEYIVIINYLDEILA 523

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
               F P     ++ ++   + L  L  Q           E    D        + +  +
Sbjct: 524 SGIEFEPAAFIDKVADKELRQKLSALMMQ-----------EEPPGDPHSLIADYIKV-IK 571

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
              +  ++E + KQI Q     + E    L+    ++
Sbjct: 572 DDDIKCRRETLLKQIEQAEQSKDMELRDKLLMEFSKL 608


>gi|159044805|ref|YP_001533599.1| DNA primase [Dinoroseobacter shibae DFL 12]
 gi|157912565|gb|ABV93998.1| DNA primase [Dinoroseobacter shibae DFL 12]
          Length = 650

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 213/618 (34%), Positives = 316/618 (51%), Gaps = 24/618 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   + ++ + G+ + WD RK+   KGD WA CPFH EKT SFH +D KG
Sbjct: 1   MSLPPGFLDELRSRVSMAQVAGRKLIWDMRKSQQGKGDMWAPCPFHQEKTASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           +YYCF CH KGD +SF+       F+E+V+ LAA AG+P+P  DP+   K   +T L  +
Sbjct: 61  YYYCFGCHAKGDAISFVRETENVGFMEAVEILAAEAGMPMPARDPQAAAKADRRTQLSEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A  FF  +LK A       YL  RG+   A   +++G+APD    L +HLR KG +E
Sbjct: 121 AEQAVQFFRLNLKTAAAAEARAYLVRRGLSEEAQARWEIGFAPDGWQHLWDHLRGKGVAE 180

Query: 181 EKIIEAGLLIDGDNS-ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           + I++AGL           YD FRNR++FPIR +RG+ IAFGGR +   +  KYLNSPET
Sbjct: 181 DLILDAGLAKPSRKEGGRPYDVFRNRIMFPIRDARGRAIAFGGRAMDPEDGAKYLNSPET 240

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LF K + L+N   A     KS          S +I+ EGYMDV++L +AG    V+ LG
Sbjct: 241 ELFDKSRVLFNHARAREAAGKS----------SPLIVAEGYMDVIALSEAGFAGAVAPLG 290

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA+TE QL LLW++SP  V   DGD  GL+A  + +DL L  +  G  + F +L   +DP
Sbjct: 291 TAVTEPQLELLWRISPEPVFALDGDRAGLQAGQRVVDLALPLITAGKSMRFCILPEKQDP 350

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D  IR  G  A   L+ ++ P+V++LW+RET  + F++P+ +A L   L+  +  I D  
Sbjct: 351 DDVIRAGGAEAMATLLDQAKPMVELLWQRETAGKVFDSPERKAALGKALRQAVAKITDPT 410

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           ++ +Y Q ++ RL  LF    ++            R R Q+GP+Q    S+LV       
Sbjct: 411 IKQHYGQEVKTRLDALFGYGPSK---GRSGPAGPWRKRGQEGPTQTTRSSALVTADRDD- 466

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             L+E+ +L TL  HP ++ E   +L D R+      ++ + L S         P+    
Sbjct: 467 -LLQESVILATLCAHPGLIAEFESDLLDHRFGTEAFARMAARLASMM-----PDPDAPEI 520

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L      + L+ +  +       S     +    R    +  A         R+ E+  
Sbjct: 521 SLEGTSCAQTLEAILSERHVTISPSLRPGCDPEVARMTVAEGFAKLAARTGWQREMEDA- 579

Query: 600 KQIAQVTAKGEAEKTAIL 617
             I    +  + + T  L
Sbjct: 580 --IEDFASVADEDLTWRL 595


>gi|229543824|ref|ZP_04432883.1| DNA primase [Bacillus coagulans 36D1]
 gi|229324963|gb|EEN90639.1| DNA primase [Bacillus coagulans 36D1]
          Length = 601

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 147/630 (23%), Positives = 275/630 (43%), Gaps = 38/630 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I ++     I  ++ +YV   ++  N     Y+  CPFH E TPSF  +  K  +
Sbjct: 5   IPNEKIDEIRRSSDIVEVVSEYVQLKKQGRN-----YFGLCPFHGEHTPSFSVSPDKQIF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
           +CF C   G+  +FL  + G SF E+ ++LA  A + L VV    E+K  +  +  ++  
Sbjct: 60  HCFGCGAGGNVFTFLMDIEGISFQEAAEKLAQKAHIELGVVLRHEEQKNIDPKRRQMLEA 119

Query: 121 IEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E+    +HH  L     +    YL  RG    AIE F +GYA  +       L+++GF 
Sbjct: 120 HELLQKLYHHLLLHTKEGEPALKYLRGRGFTDEAIEKFGIGYALPAWDFAANMLQKRGFP 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + E+GL+I  +     +DRFR+R++FPI   +G ++AF GR + K E  KYLNSPET
Sbjct: 180 LSVLEESGLVIRNEKDGKYFDRFRDRIMFPIMDEKGNMVAFAGRAVRKQEHPKYLNSPET 239

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LF+K K L+N   A   ++K              ++ EGY DV+S  +AGV+N ++++G
Sbjct: 240 PLFNKSKLLFNLNRARGPIRKK----------QQAVIFEGYADVISADRAGVENGIATMG 289

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T++T   +R++ +L+  +V+C+D D  GL AA++A  +       G  V    +  G DP
Sbjct: 290 TSITPEHVRMIKRLTDGVVICYDSDQAGLTAAFRAGKM---LSENGCEVRVAQMPDGLDP 346

Query: 360 DSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D +I  +G   F   +I  SL  +    +    N++     E+      +   I  +++ 
Sbjct: 347 DDYINQHGGEKFRMDVIGASLTFMAFKMQYFRMNKNLQNEGEKLAYIEEVIQEIAKLENP 406

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +  Y + + +           +   YG    +    R +  P++  +  +  + ++  
Sbjct: 407 VEKDLYLRQLSEEFSLSLDALKEQERQYGS---RETGTRKRSRPAENPV-PAHEEARMLP 462

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E  LL  ++    I  +    L +  +  +E Q ++++L   + E          
Sbjct: 463 ANMTAERRLLWHMLRDGEIAYKVKDFLGENSFYGDEHQAIFTYLLGWYEEGNPPDTSAFL 522

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +     +  +++       L          +  + Y Q +  +++   +  +    
Sbjct: 523 SYLPDAKLQRIAAEIEMMTVGGELT--------DEELEDYVQYVLKHQKLLRIQEKLRAQ 574

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +        + + +K   L   +  +   +
Sbjct: 575 K----DAERQNDFQKALQLAGEIVALRKSM 600


>gi|51891725|ref|YP_074416.1| DNA primase [Symbiobacterium thermophilum IAM 14863]
 gi|51855414|dbj|BAD39572.1| DNA primase [Symbiobacterium thermophilum IAM 14863]
          Length = 623

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 170/646 (26%), Positives = 280/646 (43%), Gaps = 51/646 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            + + F  ++     I  +I  YV  +RR        Y   CPFH EKTPSFH      F
Sbjct: 3   RFDQAFKDEVRARNDIVEVISAYVKLERRGN-----RYVGLCPFHSEKTPSFHVVPDGQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIR 119
           YYCF C   GD  +FL      +F E++ +LA  A +PLP     P+ E+  + + D+  
Sbjct: 58  YYCFGCKASGDVFTFLMEREHLTFYEALVQLAQRARIPLPQEERTPEEERAYRERRDMYA 117

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            +++A  F+HH L     K    YL  RG+    I  F+LG+AP           +  F 
Sbjct: 118 ALDLAARFYHHQLFTPAGKPGLDYLLGRGLTEETIRRFRLGWAPG--RGALFRALRDRFP 175

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + + +AGL++   +     D F  R++FPI    G+VI FGGR L  GE  KY N+ ET
Sbjct: 176 PQILQKAGLIVPRRDGPGFMDVFFERVMFPIADLSGRVIGFGGRIL-GGEGAKYKNTAET 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LF K   L+    A   ++          + +  ILVEGYMDVL   QAG+QNVV+ LG
Sbjct: 235 PLFVKRHVLFGLDQAKEAMR----------ARNQAILVEGYMDVLMPHQAGIQNVVAPLG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALT+ Q+R++ + + ++++ FD D  G  A  + +         G  V  + L  G+DP
Sbjct: 285 TALTDEQVRIIRQQAQQVIVAFDMDTAGQLATLRGLQ---KLYDSGCDVRVLQLPDGKDP 341

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D FIR +G  AF + I ++LPL++             TP+E A+    +   +  ++++ 
Sbjct: 342 DEFIRTHGAPAFVERIEQALPLIEFRLSLALPATRRPTPEEMAKAVESVAQVLADVRNEV 401

Query: 420 LRYYYSQAIRDRL----------------QQLFQKYITEHSGYGRYWKKNARHRDQKG-P 462
           +R  Y   + DRL                +Q+ +             + N R       P
Sbjct: 402 VREAYVDQVADRLAGDNPLAKPDLKLAIDRQMNRLLRRGFQHNLPDSRNNRRGPGAPASP 461

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
                +        ++     E  LL  L+ HP +L+    EL +  + +   ++++   
Sbjct: 462 GPTRPRPDQAPVTQAEGARRAERVLLYLLLEHPGLLRTVEAELGEEPFSDPHHRQIYRAG 521

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            +   E        +  RL +R      +Q+  ++    + ++  E    D  +      
Sbjct: 522 RALLAEADPLAGGGVIARLFDRLSDPEARQVLTEMAVTPMLTSDPEKEAADCIEKI---- 577

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKG---EAEKTAILISILHEVH 625
               R    SR+ E++E QI    A     +       ++++ ++ 
Sbjct: 578 ----RKHRDSRRLEDLENQIKAAAAASRRVDPAIWNEYMALVRKLK 619


>gi|332975852|gb|EGK12730.1| DNA primase [Desmospora sp. 8437]
          Length = 618

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 172/638 (26%), Positives = 298/638 (46%), Gaps = 42/638 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P D I  +  H  I +++GQ V   +   N     ++  CPFH E+TPSF  +  K  
Sbjct: 12  RIPDDVIDRIRDHFDIVDVVGQTVQLKKSGRN-----FFGLCPFHSERTPSFSVSPDKQI 66

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIR 119
           YYCF C   GD + FL      +F+E++ +LA  AG+ LP    ++ +  +E+ +  L +
Sbjct: 67  YYCFGCGAGGDVIRFLMETEQLTFVEAITQLADQAGIQLPRSQGEMRRDPEEEKRQQLRK 126

Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + E+A   +HH  L++    +   YL ERGI    +E F+LG++PDS + L   L+++G 
Sbjct: 127 VTELAARLYHHLLLESDHGAQAREYLTERGITRGTMEEFQLGFSPDSYHFLHSFLKRRGV 186

Query: 179 SEEKIIEAGLLIDGDNSATS---YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
            E+  +EAGLL++ D+S      +DRFR R++FPI  ++G+VIAFGGR L +G+  KYLN
Sbjct: 187 DEKTAVEAGLLVERDSSRGPSACFDRFRGRIMFPIHDTQGRVIAFGGRVLGEGQP-KYLN 245

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LF+KGK LYN   A   ++K          +   IL EGYMDV+S  QAGV   V
Sbjct: 246 SPETTLFYKGKFLYNLHRARKAVRK----------AEQAILFEGYMDVISAWQAGVFTGV 295

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTALTE Q R++ + +   V+C+D D  G  AA +A ++       G  V    +  
Sbjct: 296 ATLGTALTESQARVIRRNAGTAVICYDSDRAGQNAADRAAEV---LKEQGCVVKVAKMPP 352

Query: 356 GEDPDSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
           G DPD ++R  G  +F  ++I ++LP      +      +    +E+          I  
Sbjct: 353 GMDPDDYVRSRGADSFSGEVIAQALPYPAFKLESLKAGFNLRDEEEKMGYLTRAIEVIAE 412

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           +     + +Y + + +           E        + +   +     +    +   + G
Sbjct: 413 LPRAIEQDHYLRRLAEEFHLSLDALKQELRRIASKKRGSNGDKGTGKWNNGYHRGKHMVG 472

Query: 475 KLSKK--PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           +  +       E  LL  +++  ++     + +    ++      + ++L+S + E    
Sbjct: 473 QERRPQAHEQAEKRLLTAMMHDRSVADRVMKTVGA-DFNIEIHAAIAAYLYSYYSEGHPA 531

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
            P    + L +        +L R+     +   T E    ++    +     + R   L 
Sbjct: 532 DPGRFLRYLKD-------DRLLREAS-GLVILDTPEVTEEEISDYIR-----HIRNYPLH 578

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           ++ E  ++Q+ Q    G+  +   L   L  +  ++H+
Sbjct: 579 KEIERKKEQVKQAERAGDIAEATRLGVELIRLREKVHK 616


>gi|239827753|ref|YP_002950377.1| DNA primase [Geobacillus sp. WCH70]
 gi|239808046|gb|ACS25111.1| DNA primase [Geobacillus sp. WCH70]
          Length = 601

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 167/634 (26%), Positives = 285/634 (44%), Gaps = 46/634 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+ +   + I ++I  YV   ++  N     Y+  CPFH EKTPSF  +  K  
Sbjct: 4   RIPEETIEAIRRAVDIVDVISDYVQLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTD 116
           ++CF C   G+  SFL  + G SFIE+V+RLA  A V      L   + +          
Sbjct: 59  FHCFGCGAGGNVFSFLMDIEGISFIEAVKRLAIKANVDLADLELDDANKQSRADTGETKI 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           ++   E+   F+HH L      +    YL  RG     I+ F++GYAPDS     + L  
Sbjct: 119 MVEAHELLKKFYHHLLVNTKEGQEAFDYLQARGWTREIIDQFEIGYAPDSWDFAVKLLSG 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +GFS E + +AGL+I  +N    +DRFR+R++FPI +  G  + F GR L +G+  KYLN
Sbjct: 179 RGFSLELMEKAGLIIRKENGGGYFDRFRHRIMFPIHNHHGDAVGFSGRLLGEGQP-KYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +FHKGK LYNF  A  +++K              IL+EG+ DV+S  QAG+ + V
Sbjct: 238 SPETPIFHKGKILYNFHQARLHIRK----------HQEAILLEGFADVVSAVQAGIAHSV 287

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +++GTALTE   R+L +    +++C+DGD  G+ A ++A +L       G  V    +  
Sbjct: 288 ATMGTALTEEHARILRRNVDTVIICYDGDASGIEATFRAAEL---LADAGCHVKIATIPD 344

Query: 356 GEDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
           G DPD +I+ YG   F   +I  S  L+        + ++    +++      +   I+ 
Sbjct: 345 GLDPDEYIKKYGSDRFRRDIIDASSSLMAFKMMYFRKGKNLQNENDKIRYIEEVLQEISK 404

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           + +     YY + + D           + + +      +   + ++ P   L      + 
Sbjct: 405 LSNPIEWDYYLRQLADEFSLSLSALQEQLNRHRNNKTHSNNAQSKEAPRPPL------QK 458

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           KL       E  LL  ++    +     Q +A   ++  E + + +++++ + E      
Sbjct: 459 KLLPAFQNAERMLLAHMLRSRDVAMIVQQTIAG-AFNIEEHRAIAAYIYAFYEEGNEPDV 517

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +  RL +         L   V +  L   T E +  ++    +  L   K       +
Sbjct: 518 SLLLSRLPD--------DLKPLVTELSLLLITDEISNQELNDYMRHVLNYPKWL-----K 564

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +E E++  +   K +    A +   + E+   +
Sbjct: 565 LKEKEQEKIEAERKKDFLTAARIAKEIIEMKKML 598


>gi|209965298|ref|YP_002298213.1| DNA primase, catalytic core, putative [Rhodospirillum centenum SW]
 gi|209958764|gb|ACI99400.1| DNA primase, catalytic core, putative [Rhodospirillum centenum SW]
          Length = 620

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 206/640 (32%), Positives = 309/640 (48%), Gaps = 31/640 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P +F+++L   + +S+++ + +   R        +Y A CPFH EKTPSF+ ND+KG
Sbjct: 1   MALPPNFLEELRARLSLSDVVMKRMRLIRAG-----HEYKAPCPFHKEKTPSFYVNDAKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F++CF C   GD ++F+      SF+E+V+ LA  AG+ +P   P+   + + Q  L  L
Sbjct: 56  FFHCFGCGAHGDAIAFVMRHDNLSFMEAVELLAGEAGLSVPKASPEAVARFERQKSLFDL 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E AT  F   L     ++   YL  RG+D   I  F+LGYAP     LR  L Q G+ E
Sbjct: 116 VERATRHFEQQLGLPAGRQALEYLRGRGLDDDTIARFRLGYAPHDGAGLRAELEQAGYGE 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +IEAGL    +        F NR+IFP+   RG+V+AFG R LS     KY+NS +T 
Sbjct: 176 ADMIEAGLFKRPEPGRGLRAFFWNRVIFPVTDRRGRVVAFGARLLSGD-GPKYINSGDTP 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LYN   A                   +++ EGYMDV+S   AG    V+ LGT
Sbjct: 235 LFHKGNILYNLSRARQAA----------VEGRPVVVTEGYMDVISCVTAGFDGAVAPLGT 284

Query: 301 ALTEYQLRLLWKLSPR----IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ALTE Q+  LWKL+P      +LCFDGD  G RAA +A++ +L  L+P +      L   
Sbjct: 285 ALTEAQILELWKLAPEGRRTPILCFDGDSAGRRAAARAVERLLPLLLPDHSARVAFLPEK 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDS IR  G  AF+ ++  + PL D+LW  E + R    PD RA LE  L      I+
Sbjct: 345 EDPDSLIRAGGAAAFQAVLDRARPLADVLWDLEAQGRDLAQPDARAGLEAALAARCAAIQ 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D ++R  Y Q +RDRL    ++      G     ++  R      P   L  +    G +
Sbjct: 405 DARVRRAYEQDMRDRLFAAARQGRGGRGGRAGTGRRGMRPLVDGLPVSPLYDARFRTGLI 464

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +P   E  LLL +++HP + +E  ++LA+  +    L+ L   +             E
Sbjct: 465 RTEPRQMERLLLLPVLHHPELFEEFGEQLAEAVFATPALETLRCAMVEVLTANSALDAAE 524

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +H  L  RG  E L  L   +       A   A+I   R G+ Q + L  +   L  +  
Sbjct: 525 LHSHLSSRGLSETLDGL---LSADAPRFAHPGASIDAARTGW-QGVWLNSQEVALQAELR 580

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           + E+++A+       + +   ++ +  +  +  +     A
Sbjct: 581 DAERRLAE-------QFSQENLARVQALRQEALRRRGHSA 613


>gi|260576519|ref|ZP_05844508.1| DNA primase [Rhodobacter sp. SW2]
 gi|259021242|gb|EEW24549.1| DNA primase [Rhodobacter sp. SW2]
          Length = 650

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 198/613 (32%), Positives = 309/613 (50%), Gaps = 18/613 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   I +S ++G+ V WD RK+N  KGD WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPTGFLDELRTRISLSQVVGRKVTWDMRKSNQGKGDMWAPCPFHQEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD ++F+       F+E+V+ LA  AG+P+P  DP+  +K   ++ L+++
Sbjct: 61  FYYCFGCHAKGDAVTFVKETENLGFMEAVELLAREAGMPMPARDPQAAQKADRRSQLVQV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  ++   L+         Y+  R +   A   F++GYAP+ R  L + L QKG + 
Sbjct: 121 MEEAVKYYRLQLQTGAGAAARDYITRRRLSPEAQARFEIGYAPNVRNGLLQALTQKGIAA 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++EAGL    D   T YDRFR+R+IFPIR  RG+ I+ GGR +      KYLN PET 
Sbjct: 181 DLLVEAGLCARPDGGGTPYDRFRDRIIFPIRDGRGRAISLGGRAMDPNAQAKYLNGPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG NLYN   A     K             +++ EGYMDV++L +AG    V+ LGT
Sbjct: 241 LFSKGHNLYNHAPAREAAGK----------GKPLVVAEGYMDVIALVEAGFTAAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QLRL+W++ P  ++  DGD  G+RA  + +DL L  L  G  + F LL  G+DPD
Sbjct: 291 AVTEDQLRLMWRIHPEPIIALDGDAAGIRAGLRVVDLALPLLEAGQGLRFALLPGGQDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I+  G  A ++++ ++ P+V +LW+RETE R F++P+ +A L+  L+  +  I D  +
Sbjct: 351 DLIKAQGAAAMQRVLDDARPMVQLLWQRETEGRVFDSPERKAALDKTLRAALKRIVDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R +Y + I+    +LF +  T+ +    +  +    +  +  +     +S     L    
Sbjct: 411 RGHYGEDIKRLRWELFGQNGTQTARKPDFTPRKPGEKFTRFAAPEPPLASTRASALGAGA 470

Query: 481 SLREA----ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
              E      LL TL+ HP ++      L  +   +     L   L              
Sbjct: 471 GGAEQLLESLLLATLVVHPGLIARFESALERLELAHPGHDALRGALLRH---GHRPDLTN 527

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             + +       +L+ L  Q             +         +ALA     R   R+ E
Sbjct: 528 FRE-IIATEQRAVLESLFGQSHVQTAPPVRNAEDTDLANMCVAEALAKLHARRGARREIE 586

Query: 597 EIEKQIAQVTAKG 609
           +  + ++ +  +G
Sbjct: 587 DAVEDLSGLADEG 599


>gi|89070862|ref|ZP_01158101.1| DNA primase [Oceanicola granulosus HTCC2516]
 gi|89043550|gb|EAR49760.1| DNA primase [Oceanicola granulosus HTCC2516]
          Length = 640

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 200/591 (33%), Positives = 308/591 (52%), Gaps = 21/591 (3%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
              + +  ++G+ V WD RK+N  KGD WA CPFH EKT SFH +D KG+YYCF CH KG
Sbjct: 2   RSRLSLGQVVGRKVMWDNRKSNQAKGDLWAPCPFHQEKTASFHVDDRKGYYYCFGCHAKG 61

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHS 131
           D +SF+       F+E+++ LA  AG+ +P  DP+ +K    + +L+ ++E A  F+   
Sbjct: 62  DAISFVRETENVEFMEAIRILAGEAGLQIPESDPRAQKVADRRAELVEVMEQAVRFYRMQ 121

Query: 132 LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191
           LK         YL  RG+D  A   +++G+AP    +L +HLR +G  ++ ++ AGL+  
Sbjct: 122 LKTGAAAEARAYLAGRGLDEAAQGRWEIGFAPPGWQTLGDHLRGQGVPDKALLAAGLVRA 181

Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNF 251
            D     YD FRNR++FPIR  RG+ IAFGGR +   ++ KYLNSPET LF K + L+N 
Sbjct: 182 SDKGRAPYDTFRNRILFPIRDPRGRAIAFGGRAMDPDDNAKYLNSPETPLFDKSRTLFNH 241

Query: 252 FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLW 311
             A     K           + +I+ EGYMDV++L + G    V+ LGTA+TE QL  LW
Sbjct: 242 GPAREAAGK----------GAPLIVAEGYMDVIALAEHGFGAAVAPLGTAVTEAQLAHLW 291

Query: 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371
           +++   ++  DGD  G RAA + ++L L  L  G  + FVLL  G+DPD  +R  G  A 
Sbjct: 292 RIADEPIIALDGDTAGQRAALRVVELALPLLTAGKSLRFVLLPEGQDPDDLLRAKGPAAM 351

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
             L+ E+ PL+ +LW+  TE R+F++P+ +A L+  L +    I+DQ LR +Y   +R  
Sbjct: 352 AGLLEEAQPLIRLLWQAATEGRTFDSPERKAALDKALADKTALIRDQGLRRHYDDELRQL 411

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
             +LF+    + +G G  +K     ++    ++   ++S++      +  LREA +L  L
Sbjct: 412 KWELFRPPARKKAGGGMAFK----GKNAPAQARAGTRASMLATGTLSEDHLREAVILAVL 467

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           I +PA+L +   EL  + + +     L   L             ++   L ER     L+
Sbjct: 468 ICNPAVLHDFLGELEGLHFTDRTHGALAHALLIA------PPDADLRPYLAERLGPGALE 521

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +L        L  A         R    + LA     R   R+  E E+ +
Sbjct: 522 KLFAD-THVALTPAVRRPGEDAARMCLAEELAKLNARRGHRREIAEAEEDL 571


>gi|307944277|ref|ZP_07659618.1| DNA primase [Roseibium sp. TrichSKD4]
 gi|307772623|gb|EFO31843.1| DNA primase [Roseibium sp. TrichSKD4]
          Length = 654

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 201/651 (30%), Positives = 317/651 (48%), Gaps = 35/651 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +    + ++   + +S+++G+ V WDRRKT   KGDYWACCPFH EK+PSFH +D + 
Sbjct: 1   MRFDNRLLDEIRARLTLSDIVGRRVTWDRRKTQPGKGDYWACCPFHQEKSPSFHVDDRRN 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y CF C   GDH  FL+   G +F E+V+RLA  AGV LP  DP+  K+EK +  L  +
Sbjct: 61  RYKCFGCGASGDHFKFLTETEGLNFPEAVERLAEQAGVALPAPDPQAAKREKKRAGLADV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E+A  FF       R +    Y  +RG     +  F+ GYAP +R +L+++L ++   E
Sbjct: 121 CEMAARFFQMEFSAPRGEHARSYALKRGFTPQTLAEFRFGYAPSTRDALKKYLAERDVPE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E ++EAGL+I  DN   SYDRFR RL+ PI+  RG+V+AFGGRTL      KYLNSPET 
Sbjct: 181 EVMVEAGLVIKPDNGRPSYDRFRGRLMIPIQDDRGRVVAFGGRTLDPDGQPKYLNSPETP 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  L+N   A     K+ R           I+VEGY+D ++L QAG+  VVS+LGT
Sbjct: 241 LFHKGVMLFNAHRAREPAYKAGRA----------IVVEGYLDAIALAQAGIPYVVSTLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A TE Q+  LW+ +P  V+CFDGD  G  AA++ +D +   L  G    F  L  G DPD
Sbjct: 291 AFTEDQVLRLWRFAPEPVVCFDGDAAGTAAAHRVVDRIFPVLKSGYSFQFCFLPDGMDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G   FE  +  S  L +++W RE      +TP+ +A LE    + I+ I+D ++
Sbjct: 351 DLVQKEGVPGFEAQVSSSQTLFNVVWDREVSVAQLDTPERKAALEKRFDDLIDTIRDPRV 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   ++ RL  LF +   +  G  +            GP+                 
Sbjct: 411 KRRYQLDLKFRLSNLFFEQARKGRGGRQQGAGRGERPTITGPAPSPDTPLFGT------- 463

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  +    + +P  L    + ++ +R+ +   Q+    L +     +      +   
Sbjct: 464 ---ERLICGLSVKYPQFLDRHLERISALRFSDPVHQRFCDTLCALVNGLEETPVATVVDG 520

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIV-----------DVRQGYQQALALYKRFR 589
           L +    +L+ ++ ++   +   + +                 D  + + +A  L+    
Sbjct: 521 L-DETSRQLMAEVIQREGPSSDGAVSRHGAFSALAQRFPLLKVDPPEDFVEAAFLHFLDV 579

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           L   + + +E+++ +     E E        +  +   + +   + A  EG
Sbjct: 580 L---ELKTLEQELEREMEAAETELDEASWHRMQAITQDLSRRREECARDEG 627


>gi|254470055|ref|ZP_05083459.1| DNA primase [Pseudovibrio sp. JE062]
 gi|211960366|gb|EEA95562.1| DNA primase [Pseudovibrio sp. JE062]
          Length = 652

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 196/642 (30%), Positives = 318/642 (49%), Gaps = 22/642 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M + + F+ D+   + +++++G+ V WDRRK+   KGDYWACCPFH EK+PSFH ++ + 
Sbjct: 1   MRFDQLFLDDIRNRVSLTDVVGRRVTWDRRKSQPGKGDYWACCPFHSEKSPSFHVDERRN 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y CF C   GDH  FL    G SF E+V+ LA +AG+ +P  DP+  K+   +  L  +
Sbjct: 61  RYKCFGCGESGDHFKFLMETEGLSFPEAVEELAGLAGIAMPAPDPQAAKRAAKRNTLTDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E+A  ++ H  ++   +    Y+  RG+ +  +  F+ G+AP  R +L++ L  K  SE
Sbjct: 121 CEMAARYYRHMFQSVEGRAAQEYVQRRGLSAETLNEFQFGFAPPGRDNLKKALMAKDISE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            ++IE GLLI  D+   SYDRFRNRL+ PI   RG+ +AFGGRT+      KYLNSPET 
Sbjct: 181 AELIEVGLLIKPDDGRPSYDRFRNRLMIPIHDDRGRAVAFGGRTMDPDGQPKYLNSPETP 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  L+N   A                +   I+VEGYMD ++L QAG++  V+SLGT
Sbjct: 241 LFHKGTMLFNAHRARQPAY----------EAGQAIVVEGYMDAIALWQAGMKGTVASLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A TE Q+  LWK +   V+CFDGD  G+ AA++A+D +L  L  G    F  L  G+DPD
Sbjct: 291 AFTEDQIMRLWKFADEPVICFDGDVAGISAAHRAVDRILPVLTSGKSFQFAFLPDGQDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I   G +A    + ++LPL +++W+RE+E+   +TP+ +A LE  +++ +  IKD+++
Sbjct: 351 DVINAGGTSAMYGELEKALPLSEVVWQRESEHARIDTPERKAALEKAVEDLVGTIKDERV 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   +R +L  LF +    + G G       R          L +            
Sbjct: 411 QKRYRMDLRLKLSNLFYEESRRNRGQGGGRDGGWRGPQGGNDRASLAKVEAPDTPAYG-- 468

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E +     + +P + +  ++ ++ + Y N       + L     +       +I+ +
Sbjct: 469 --VERSFCTMCLMYPELFERHFERISQLTYSNELHSMFMAALVRIATDLAEGAVTQIYNK 526

Query: 541 LCERGFGELLKQLD--------RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
           L ER +  L + +          +      W A T    +      +  + +        
Sbjct: 527 LDERFYQILQEAIVSSSGEEDGSKSSTLRRWDALTNRLQILKNDPPEDFVEMLFLNYADM 586

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +   +E ++   T   E + T    S    +   + +   +
Sbjct: 587 LELRMLELELEHETRAMEQDLTEESWSRFQALQQDLSRRREE 628


>gi|83594215|ref|YP_427967.1| DNA primase [Rhodospirillum rubrum ATCC 11170]
 gi|83577129|gb|ABC23680.1| DNA primase [Rhodospirillum rubrum ATCC 11170]
          Length = 620

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 188/642 (29%), Positives = 312/642 (48%), Gaps = 29/642 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P  F+ +L   + +S+++G+ V   R+       ++   CPFH+EK+PSF  ND KG
Sbjct: 1   MALPNAFLDELRARLTLSSVVGRRVKLARKGR-----EFLGLCPFHNEKSPSFTVNDEKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F++CF C   GD + F       +F E+V+RL+A AG+ +P    +   + +       +
Sbjct: 56  FFHCFGCGAHGDVIGFEMRAANIAFREAVERLSAEAGLEMPRETAEDRDRSRQAASHREI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  F+  +L+    +    YL  RG+D   +  F+LG++P    +L+  L ++G  E
Sbjct: 116 MEMACAFYQKALRLPEGRGAMEYLRGRGLDDATLARFRLGFSPQG-GALKAALAREGVDE 174

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + +++ GL++  D+   ++D FR R++FPI    G+V+AFG R L +G+  KYLNSP+T 
Sbjct: 175 QAMVDLGLILRSDDGRPAFDYFRGRVMFPIGDPAGRVVAFGARILGEGQP-KYLNSPDTP 233

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG +LYN   A    +           S  II+ EGYMDV++L +AG+   V+ LGT
Sbjct: 234 LFHKGHSLYNLGPAREAAR----------QSGAIIVAEGYMDVIALARAGLGWAVAPLGT 283

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+  LW+  P  VLCFDGD  G RAA +A++  L  + PG  + F LL  G DPD
Sbjct: 284 ALTEAQMEALWRTIPEPVLCFDGDGAGRRAAARAMERALPLIGPGRSLRFALLPGGRDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G  A  +++  ++P  +M W+  +E ++  TP++RA LE  +   +  I D+ L
Sbjct: 344 DLLREGGPVALRQVLDVAVPFSEMAWRELSEGQALTTPEQRAALEAAIDAFVAKIADRSL 403

Query: 421 RYYYSQAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
           + +Y QA+RDR   + +     +      +  +K  +   +  P  R     L     + 
Sbjct: 404 QGHYRQALRDRFWTVLRGDSARSRAERARKDPRKERKDGGRWRPGDRPPAPGLPVAAPAD 463

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              LRE  LL  ++NHP +     + L  +      L  L   +       K      + 
Sbjct: 464 PARLRERLLLAAVLNHPEVFDHVGERLGAMILGEGALDSLRQDVVMILGGGKSLDMNGLW 523

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            +L  RG+   +  L R         A   A+   V+ G+     L++R   L    +  
Sbjct: 524 SQLSARGYAADVAALTRPELLIHGKFARPGADPGLVKAGWDHTYDLHQR-GALQADCQRA 582

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +++ +         T   +        Q    +  E +++G
Sbjct: 583 NERLGEH-------MTQEALEHFLAFKQQDKWAD--EPVLDG 615


>gi|328542885|ref|YP_004302994.1| DNA primase catalytic core, N-terminal domain family [polymorphum
           gilvum SL003B-26A1]
 gi|326412631|gb|ADZ69694.1| DNA primase catalytic core, N-terminal domain family [Polymorphum
           gilvum SL003B-26A1]
          Length = 648

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 205/637 (32%), Positives = 319/637 (50%), Gaps = 37/637 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +    + ++   + +S+++G+ V WDRRKT   KGD+WACCPFH EK+PSFH +D +G
Sbjct: 1   MRFDNRLLDEIRARLNLSDIVGRRVTWDRRKTQPGKGDFWACCPFHQEKSPSFHVDDRRG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y CF C   GDH  FL+   G SF E+V+RLA  AGV LP  DP+  ++E+ +  L  +
Sbjct: 61  RYKCFGCGASGDHFRFLTDTEGLSFPEAVERLAGQAGVALPAPDPQAARRERKRASLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E+A  FF       R +    Y   R +    ++ F++G+AP+SR +L+ HL  +G  E
Sbjct: 121 CEMAARFFQMDFAGPRGEVARAYAARRNLSPATLQEFRVGFAPESRDALKRHLTAQGVDE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             ++EAGL+I  D+   SYDRFR RL+ PI   RG+V+AFGGRTL      KYLNSPET 
Sbjct: 181 AAMVEAGLVIKPDDGRPSYDRFRGRLMIPIHDERGRVVAFGGRTLDPNGQPKYLNSPETP 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  L+N   A     K          +   ++VEGY+D ++L QAG+++VV++LGT
Sbjct: 241 LFHKGVMLFNVHRAREPAFK----------AGQAVVVEGYLDAIALWQAGLKHVVATLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A TE Q+  LWKL+P  V+CFDGD  G+ AA++AID +   L  G    F  L  G+DPD
Sbjct: 291 AFTEDQIIRLWKLAPEPVVCFDGDAAGVAAAHRAIDRIFPVLRSGCSFQFCFLPDGQDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G   F + +  + PL + +W+RE    S +TP+ +A LE   ++ I  I+D+++
Sbjct: 351 DLIRARGLAGFLEEVRRAQPLSEAVWEREVSVASLDTPERKAALEKRFEDLIATIRDERV 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y   IR RL  LF +             + A       P   +  +           
Sbjct: 411 RRRYQLDIRFRLSNLFFERARRSGAAAGAAARPAALARVSAPEGPMFGT----------- 459

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  +    + +P +L    + +A + + +    +    L     +       +  + 
Sbjct: 460 ---ERLVCGLCVRYPDLLDRHIERIAALGFADELHARFRDELCRVATDLDATSVADFFES 516

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANI---------VDVRQGYQQALALYKRFRLL 591
           L ER +  L + +  +    G   A    +           D  + + +A+ L+    L 
Sbjct: 517 LDERFYQILSEVMAAKPESNGSPPARAGFSDLLQRFPLLRNDPPEDFVEAVFLHFLDGL- 575

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +   +E+++ Q    GE +      + +  +   +
Sbjct: 576 --ELRALERELQQ-ELGGEDDVDEEAWNRIRGLSQDL 609


>gi|296140433|ref|YP_003647676.1| DNA primase [Tsukamurella paurometabola DSM 20162]
 gi|296028567|gb|ADG79337.1| DNA primase [Tsukamurella paurometabola DSM 20162]
          Length = 641

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 145/654 (22%), Positives = 267/654 (40%), Gaps = 50/654 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +     I +++G+YV           G     CPFHDEKTPSFH   ++GF
Sbjct: 4   RIPERDIAAIRDRARIEDVVGEYVALRPAG----VGSMKGLCPFHDEKTPSFHVRPTQGF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           ++CF C   GD +SFL  +    F+E+V++LA   G+ +      P  ++    +  L+ 
Sbjct: 60  FHCFGCGEGGDVISFLQKIEHVPFVEAVEQLADKVGIQISYEGGTPGPKQDRGTRMRLVA 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A  F+   L+    +    YL +R   +   E +  GYAP    ++ + L ++GF 
Sbjct: 120 ANAAAQKFYAEQLRTPEAETARQYLQDRDFTAEDAEFYGCGYAPSGWDTMTKALLRQGFE 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
            +++  AGL   G       DRF  RL++PI++  G VI FG R L   ++  KY+N+ E
Sbjct: 180 VKELEAAGLTKQGQR--GPIDRFHRRLLWPIKNLGGDVIGFGARKLFDDDNLGKYMNTTE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T+L+ K + L+    A  ++ K             +++VEGY DV+++  AGV+  V+S 
Sbjct: 238 TMLYKKSQVLFGLDHAKKHIAK----------GHQVVVVEGYTDVMAMHAAGVETAVASC 287

Query: 299 GTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  E  + L+ +L          ++  FDGD+ G  AA KA D          R    
Sbjct: 288 GTAFGEDHVSLVRRLMMDDSYFRGEVIYTFDGDEAGRAAAMKAFDGDQKIAG---RTFVA 344

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP    + +G  A   LI + +P+ +   K        +T + R          
Sbjct: 345 VAPDGMDPCELRQKHGDEAVRDLIAQRVPMFEFAVKTLISEFDLDTAEGRVHALRRSVPV 404

Query: 412 INHIKDQKLRYYYSQAIRDR-----LQQLFQKYITEHSGYGRYWKK---------NARHR 457
           +  IKD  LR  Y++ +        + Q+ ++   E +   R   +         N R R
Sbjct: 405 VARIKDMALRDEYARQLAGWVGWDDVGQVLRRVREESARIRRGEGRPGPGAPAPSNNRFR 464

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
           + + P  +   +   +   +      +  +L   +  PA+    +  L+D  + +   + 
Sbjct: 465 EPENPVPQARPTGPQRPNPTDPVLWVQREVLKCALQAPALAGTVFDALSDDMFTDPAYRA 524

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           +   +             E    +     G +L+ L  ++    L      +        
Sbjct: 525 IRLAIEGAGGIAAGLGGAEWVDTVVRHADGPVLEALVTELAVEPLEVQGEPSP------R 578

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           Y +++    +   +  Q  +++ ++ +++   + +    L   L  +      +
Sbjct: 579 YVESVLARLQEVWVGGQVADLKSKLKRMSPNADDD-YNRLFGDLVALESYRQSL 631


>gi|87200248|ref|YP_497505.1| DNA primase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135929|gb|ABD26671.1| DNA primase [Novosphingobium aromaticivorans DSM 12444]
          Length = 621

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 203/644 (31%), Positives = 307/644 (47%), Gaps = 29/644 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M     ++ +L   I +S LIG+ V   +        ++ ACCPFH+EKTPSF  ND KG
Sbjct: 1   MTLTPQWLDELRTRISLSGLIGRSVRVQKAGR-----EFKACCPFHNEKTPSFTINDEKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF C   GD + +++   G  F+E+V+ LA  AG+ +P  DP+  K+ + Q  L  +
Sbjct: 56  FYHCFGCGAHGDAIRWMTDHQGLPFMEAVKELALQAGMEVPAPDPRAAKRAEQQKSLHDV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           ++ A DFF   L   R      YL  RG  +  +  F  G+APDSR +L+E L   GF +
Sbjct: 116 MQAAQDFFVRCLGEERGTEARRYLASRGFPAGIVRDFGFGFAPDSRTALKEALS--GFPD 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL--SKGESVKYLNSPE 238
           E +IEAGL I        YDRFR RL+ PI   RG+VIAFGGR L   K ++ KYLNSP+
Sbjct: 174 EMLIEAGLRIVV-EGKEPYDRFRGRLMLPILDPRGRVIAFGGRILTAEKTDAPKYLNSPD 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF KG+ +YN   A    +++ R          +++VEGYMDV++L  AG+   V+ L
Sbjct: 233 TPLFDKGRTVYNLHRAGPASRQNGR----------VVVVEGYMDVVALAAAGIGEAVAPL 282

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE+Q+  LW+L     LCFDGD  G RAA +AI   L  L PG+ +  V L +G D
Sbjct: 283 GTALTEHQIERLWRLVETPTLCFDGDAAGQRAAMRAITRALPLLRPGHSLRIVTLPQGMD 342

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD  ++  G  A E L+  +  LVD+LW+ E +     TP+++A L+  L      I+  
Sbjct: 343 PDDVVKKQGPAAMEALLDGARSLVDVLWEVERDAAPLATPEDKAGLKARLLAHCETIQHP 402

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            ++  Y + + +R  +L            R     AR + Q         +   K K+ +
Sbjct: 403 DIKSLYRRELTERFGELAFARKERAPFQPRQGGSAARGKGQPWKPAPPPLAEQDKAKMLR 462

Query: 479 KPSLREAALLLT----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
             +    +LL      L+ HP  +      LA +R D+     L   L       +    
Sbjct: 463 IGTGPSTSLLAAVLDGLLRHPQQIARHADSLARLRPDDPATCALIDALLVLSDGVQPLES 522

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E +   L ERG      +L      AG+       +         +A+A+   +  +   
Sbjct: 523 EALRPILLERGL-----RLPSAQDYAGMRFGFLTGSGDSAADELAEAVAILVEWPAVEEA 577

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
             E  ++     +     +   L +    +  ++ Q+    A +
Sbjct: 578 LAEATRRAETELSDENFAEQQRLRARSMALRARLGQMGRARAAL 621


>gi|288555753|ref|YP_003427688.1| DNA primase [Bacillus pseudofirmus OF4]
 gi|288546913|gb|ADC50796.1| DNA primase [Bacillus pseudofirmus OF4]
          Length = 602

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 174/630 (27%), Positives = 292/630 (46%), Gaps = 38/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+ +     I  +I  YV   ++        Y   CPFH EK+PSF  +  K  
Sbjct: 9   RIPEEKIEQIRKSTDIVEVISDYVQLKKQGRQ-----YIGLCPFHGEKSPSFSVSQDKQL 63

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   G+  SFL    G +F+++ + LA  A + LPV       +      +I   
Sbjct: 64  YHCFGCGAGGNVFSFLMEHEGYTFVDAAKDLAGRANIDLPVQSQGETNRHSPTKMMIDGH 123

Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           E+A+  +HH L           Y   R      +E F++G+AP+   SL+  L ++GFS 
Sbjct: 124 ELASKLYHHVLTLTEEGAGGREYAKSRKFTKEQLEHFQIGFAPNRWDSLKIILDKRGFSL 183

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E + +AGLL   ++    YDRFRNRL+FPI  ++G+VIAFGGR++   +  KYLNS ET 
Sbjct: 184 EMMAKAGLLGIRESDNGYYDRFRNRLMFPIWDNQGKVIAFGGRSIGSDKP-KYLNSAETP 242

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHK   LY    A  Y++K           +  IL EGY+DV++   AG+ N V++LGT
Sbjct: 243 IFHKSNTLYALHLARPYIRK----------ENAAILFEGYVDVVAAWGAGITNGVATLGT 292

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT+ Q ++L + +  + +C+D D  G+ AA+++  +       G  V   L+  G DPD
Sbjct: 293 SLTQEQAKVLRRNAENVTICYDSDRAGVDAAFRSATI---LEEAGCHVKIALMPEGLDPD 349

Query: 361 SFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            FIR +G   F+  +I  SL L+    +   + R+     ER      +   I+ +K   
Sbjct: 350 DFIREFGAERFKTDVIGASLSLMAFKMRFLRKGRNLQDEGERLRYIEEVLREISSLKRAV 409

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R +Y + + D      +    E     R  KK  +    + P +R    +L + KL   
Sbjct: 410 ERDHYLRQLADEFSLSLEALKQEQFQLYRA-KKQQQAGKSEQPIKRHATKALNQKKLLPA 468

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  LL  ++    I ++  + +    ++ +E   + ++LF+ + E     P +   
Sbjct: 469 YKNAERLLLAHMMRDIEIAEQVQERIGG-AFNVDEHHAIAAYLFAYYGEGNEADPSQFVN 527

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           RL +         L R   +  + S   E +  ++    +Q +  Y ++  + +QKE + 
Sbjct: 528 RLEDPD-------LMRVASELAMLSVNEECSEQELIDYMKQ-IENYPKWVDI-QQKEILM 578

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           KQ      + +    A L   + ++  Q+H
Sbjct: 579 KQ------EHDPVAAAKLKMEIIQMKKQLH 602


>gi|91227145|ref|ZP_01261629.1| DNA primase [Vibrio alginolyticus 12G01]
 gi|269968566|ref|ZP_06182569.1| DNA primase [Vibrio alginolyticus 40B]
 gi|91188797|gb|EAS75084.1| DNA primase [Vibrio alginolyticus 12G01]
 gi|269826824|gb|EEZ81155.1| DNA primase [Vibrio alginolyticus 40B]
          Length = 588

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/633 (26%), Positives = 288/633 (45%), Gaps = 58/633 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---------EKKEKI 113
           +CF C   G+ + FL       F+E+++ LA+  G+ +P               +     
Sbjct: 60  HCFGCGAHGNAIDFLMEFDRLEFVEAIEELASYLGLDVPREQRSGGNGSFQSGPQASSSE 119

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + +L  L+     F+ + LK    K    YL +RG+    ++ F +GY  D    +R++ 
Sbjct: 120 KRNLYDLMGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q   +++ ++  G+LI+ D     YDRFR R++FPIR  RG+VI FGGR L    + KY
Sbjct: 180 GQNKENQDMLVTGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L++L++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L
Sbjct: 288 SVASLGTSTTGDHLQVLFRQTSTVVCCYDGDRAGREAAWRAMENALPYLTDGRQLKFMFL 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             GEDPDS+IR  GK AFE+ +  ++PL + ++   T+    +T +  A+L       I+
Sbjct: 348 PDGEDPDSYIRQNGKQAFEQQVSNAMPLSEFMFSSLTQQVDMSTKEGMAKLSTLAVPLID 407

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +    LR Y  + +  RL  + ++ + +         K  +   +   +          
Sbjct: 408 KVPGGTLRLYLRELLGRRLGLVDERQLQQLISKQGKEDKRPQPHKEIKRTPM-------- 459

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                        ++  LI +P  +       +        L  L+  +        +  
Sbjct: 460 -----------REVIALLIQNPQYVSMVPDLTSVRDLPIPGL-SLFVDVLDKCQAHPHIN 507

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             ++ +         LL +L              E  +  + +   Q +          +
Sbjct: 508 TGQLLEHWRNSQNETLLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV---------EK 557

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           Q E ++ +   V     AE+   L++++ ++  
Sbjct: 558 QIENLQAKARSVGLS--AEEKRELLALMLDLKA 588


>gi|294678571|ref|YP_003579186.1| DNA primase [Rhodobacter capsulatus SB 1003]
 gi|294477391|gb|ADE86779.1| DNA primase [Rhodobacter capsulatus SB 1003]
          Length = 654

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 205/605 (33%), Positives = 310/605 (51%), Gaps = 28/605 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   +P+S ++G+ V WD RK+N  KGD+WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPPGFLDELRNRLPLSQVVGRKVIWDPRKSNRAKGDFWAPCPFHTEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD +SF+       F+E+V+ LA  AG+ +P  DP+  +K   +T+L+R+
Sbjct: 61  FYYCFGCHAKGDAVSFVKETENVGFVEAVEILAREAGMVMPARDPQAAQKADRRTELVRV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  +F   L          YL  R + + A+E F++G+APDSR  L + L  KG + 
Sbjct: 121 MEEAVKYFRLQLNTQAGAAARDYLARRRLGASALERFEIGFAPDSRNGLFQALTGKGIAP 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + I++AGL I  D   T YDRFR R+IFPIR +RG+ I+ GGR +      KYLN PET 
Sbjct: 181 DLIVDAGLCIRPDEGGTPYDRFRGRIIFPIRDARGRAISLGGRAMDPNARAKYLNGPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+NLYN   A     K             +I+ EGY+DV++L +AG    V+ LGT
Sbjct: 241 LFDKGRNLYNLGPAREACGK----------GKPLIVAEGYVDVIALVEAGFTGAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QL+L+W+++   V+  DGD  GLRA  + +DL L  L  G  + F +L  G+DPD
Sbjct: 291 AITEDQLKLMWRIADEPVIALDGDAAGLRAGLRLVDLALPLLEAGKALRFAILPGGQDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I+  G+ A E+++  + P+VD+LW+RETE + F++P+ +A L+  L+  +  I D  +
Sbjct: 351 DLIKAEGREAMERVLASAKPMVDLLWQRETEGKVFDSPERKAALDKSLRAALKKIADPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGY------------GRYWKKNARHRDQKGPSQRLMQ 468
           R +Y + I+   ++LF       +                        + Q  P      
Sbjct: 411 RTHYGEDIKRLREELFGLSRGGQAPRWTMPQGAFSPGPRGPGAGGRGAKPQALPLSATRA 470

Query: 469 SSLVKGKLSK-KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           S L           LRE  ++  L  HP ++ E   ++  +R  +  L  L   +     
Sbjct: 471 SLLASAGSEAVAEQLRETMIVAILCAHPVLVAEFESQIERLRLSDPGLGALRDTML---- 526

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
            Q       + + L     G +L+ L R              +    R    + LA  + 
Sbjct: 527 MQADRPAGALAEALARENPG-VLETLMRHPHVRSAPPVLRRDDSDFARMCLAEELAKLQA 585

Query: 588 FRLLS 592
            R + 
Sbjct: 586 TRAVR 590


>gi|329848684|ref|ZP_08263712.1| DNA primase [Asticcacaulis biprosthecum C19]
 gi|328843747|gb|EGF93316.1| DNA primase [Asticcacaulis biprosthecum C19]
          Length = 620

 Score =  395 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 195/633 (30%), Positives = 304/633 (48%), Gaps = 24/633 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ +L   +P S +IG+ V   R        ++    PF  EKTPSF+ ND K 
Sbjct: 1   MRFDDHFLDELKTRLPASEVIGKSVKLRRNGR-----EWVGLSPFSKEKTPSFYVNDQKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F++ FS    GD ++FL      SF E+V++LAA AG+ LP V P+    E+ +  L   
Sbjct: 56  FFHDFSSGKSGDIITFLQETERLSFNEAVEKLAAEAGMALPAVTPETRAFEQKRQSLNDW 115

Query: 121 IEVATDFFHHSL--KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           +++A  +F   L  +N   +    YL +RG+    I+ + LGY+P  R +L++ L QKG 
Sbjct: 116 MDLAQKWFMARLQDRNPGAQAARDYLTKRGLSPEDIQTYGLGYSPKERTALKDALVQKGA 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
              +++E GLLI+ +     YDRFR+RLIFPI+  R  V++FGGR L+  E  KYLN P+
Sbjct: 176 KVSELVECGLLIEVEGGGAPYDRFRDRLIFPIQDQREHVVSFGGRALNPDEKAKYLNGPD 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LFHKG+ L+    AL  L             + +++VEGYMDV++  +A V   V+ L
Sbjct: 236 TTLFHKGQMLFGLPKALKILG-------AEQHHADLVVVEGYMDVIACQRAKVA-AVAPL 287

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE Q+ +LW+  P   LCFDGD  G RAAY+A+D  L  L PG      L+  G+D
Sbjct: 288 GTALTEEQIDILWRRHPEPTLCFDGDKAGQRAAYRALDRALPKLKPGKSFKVCLIVGGKD 347

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD  +R  G  A  + + ++ P V +L++RE E    +TP+ +A  +  L+     I+D+
Sbjct: 348 PDDVLREKGALALREALKDTKPFVHVLFQREAELEPLDTPERKAGFKKRLRALAAQIEDK 407

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA--RHRDQKGPSQRLMQSSLVKGKL 476
            L   Y   +  R  ++F               K    R R +   +  L +S     KL
Sbjct: 408 DLADSYRHDLLARYDEMFAAKPQPQGQGSFQPYKKGEFRKRGEVYLAPALQESRTAAVKL 467

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           S+      A L   L++HP  + +Q + L    + +  L  L   L +          E 
Sbjct: 468 SRALDSISACLAQGLLDHPDWMSDQVEGLEAFGFGDETLDPLARTLVAISFRGDPLDSEG 527

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + + L  +G G LL ++ +    +G    + + ++ D    + QA     R   L R   
Sbjct: 528 LSRHLHSQGLGALLSEIQKAALKSGAPFLSPDISLADAHARWIQAFNAMSRLTALER--- 584

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                +     +   E  + L      +   + 
Sbjct: 585 ----ALNSSRDRVGTEFFSRLKLERDALRRTLR 613


>gi|149191851|ref|ZP_01870087.1| DNA primase [Vibrio shilonii AK1]
 gi|148834327|gb|EDL51328.1| DNA primase [Vibrio shilonii AK1]
          Length = 588

 Score =  395 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/633 (26%), Positives = 296/633 (46%), Gaps = 58/633 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKQGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---------DPKIEKKEKI 113
           +CF C V G+ + FL       F+E+++ LAA  G+ +P                   + 
Sbjct: 60  HCFGCGVHGNAIDFLMEYERLEFVEAIEELAASLGLDVPREQRNGSSGNFSKGPTANSEQ 119

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     ++   LK + +K    YL  RG+    ++ F +GY PD   S+R++ 
Sbjct: 120 KRSLYDLMGTIGQYYRDQLKVSSNKAAIEYLKGRGLSGEIVQKFGIGYVPDEWDSVRKNF 179

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  +++ ++  G+LI+ D     YDRFR R++FPIR  RG+VI FGGR L   ++ KY
Sbjct: 180 GQQKATQDMLVSGGMLIENDKGNR-YDRFRGRIMFPIRDRRGRVIGFGGRVL-GNDTPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             +++VEGYMDV++L Q GV  
Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QVLVVEGYMDVVALAQYGVDY 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L++L++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L
Sbjct: 288 SVASLGTSTTGDHLQVLFRQTSTVVCCYDGDRAGRDAAWRAMENALPYLNDGRQLKFMFL 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             GEDPDSFIR  GK AFE  +  ++PL D ++    +     T +  A+L       I+
Sbjct: 348 PDGEDPDSFIRQNGKEAFETEVQNAMPLSDFMFSSLMQQVDSRTKEGMAKLSTLAVPLID 407

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +    LR Y  + +  +L  + ++ + +         +  +   +  P + + ++ +  
Sbjct: 408 KVPGGTLRLYLRELLGRKLGLVDERQLQQLID------RQGQQETRAQPHKEIKRTPM-- 459

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                        ++  L+ +P+  +               L  L+  +        +  
Sbjct: 460 -----------REVIALLLQNPSYAEMVPDLSTVRDLSLPGLN-LFVEVVDKCQAHPHMT 507

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             ++ ++        LL +L   V          +  I  + +   Q +          +
Sbjct: 508 TGQLLEQWRGSNNEALLSRLASWVIPLDD-DNQEDVFIDSLDKILSQCI---------EK 557

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           Q E ++ +  + +     E+   L++++ ++  
Sbjct: 558 QIENLQAK--ERSVGLSVEEKRELLALMLDLKA 588


>gi|262392397|ref|YP_003284251.1| DNA primase [Vibrio sp. Ex25]
 gi|262335991|gb|ACY49786.1| DNA primase [Vibrio sp. Ex25]
          Length = 588

 Score =  395 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/633 (26%), Positives = 288/633 (45%), Gaps = 58/633 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---------EKKEKI 113
           +CF C   G+ + FL       F+E+++ LA+  G+ +P               +     
Sbjct: 60  HCFGCGAHGNAIDFLMEFDRLEFVEAIEELASYLGLDVPREQRSGGNGSFQSGPQASSSE 119

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + +L  L+     F+ + LK    K    YL +RG+    ++ F +GY  D    +R++ 
Sbjct: 120 KRNLYDLMGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q   +++ ++  G+LI+ D     YDRFR R++FPIR  RG+VI FGGR L    + KY
Sbjct: 180 GQNKENQDMLVTGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L++L++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L
Sbjct: 288 SVASLGTSTTGDHLQVLFRQTSTVVCCYDGDRAGREAAWRAMENALPYLTDGRQLKFMFL 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             GEDPDS+IR  GK AFE+ +  ++PL + ++   T+    +T +  A+L       I+
Sbjct: 348 PDGEDPDSYIRQNGKQAFEQQVSNAMPLSEFMFSLLTQQVDMSTKEGMAKLSTLAVPLID 407

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +    LR Y  + +  RL  + ++ + +         K  +   +   +          
Sbjct: 408 KVPGGTLRLYLRELLGRRLGLVDERQLQQLISKQGKEDKRPQPHKEIKRTPM-------- 459

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                        ++  LI +P  +       +        L  L+  +        +  
Sbjct: 460 -----------REVIALLIQNPQYVSMVPDLTSVRDLPIPGL-SLFVDVLDKCQAHPHIN 507

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             ++ +         LL +L              E  +  + +   Q +          +
Sbjct: 508 TGQLLEHWRNSQNETLLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV---------EK 557

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           Q E ++ +   V     AE+   L++++ ++  
Sbjct: 558 QIENLQAKARSVGLS--AEEKRELLALMLDLKA 588


>gi|254502588|ref|ZP_05114739.1| DNA primase catalytic core, N-terminal domain family [Labrenzia
           alexandrii DFL-11]
 gi|222438659|gb|EEE45338.1| DNA primase catalytic core, N-terminal domain family [Labrenzia
           alexandrii DFL-11]
          Length = 661

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 202/592 (34%), Positives = 298/592 (50%), Gaps = 33/592 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +    + ++   +P+S ++ + V WDRRKT   KGDYWACCPFH EK+PSFH +D + 
Sbjct: 13  MRFEPRLLDEIRARLPLSEIVARRVTWDRRKTQPGKGDYWACCPFHQEKSPSFHVDDRRN 72

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y CF C   GDH  F++   G SF E+V+RLA  AGV LP  DP+  ++E+ +  L  +
Sbjct: 73  RYKCFGCGASGDHFKFITETEGLSFPEAVERLADQAGVALPAPDPQAARREQKRASLADI 132

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E+A  FF       R +    Y+ +RG+    +  F+ G+APDSR +L+ HL+ +G  E
Sbjct: 133 CEMAAQFFEAQFAGPRGEGARAYVQKRGLTPETLREFRFGFAPDSRDALKSHLKGRGVEE 192

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +IEAGLLI  D++  SYDRFR RL+ PI+  RG+V+AFGGRT+      KYLNSPET 
Sbjct: 193 PAMIEAGLLIKPDDARPSYDRFRGRLMIPIQDDRGRVVAFGGRTMLPDGQPKYLNSPETP 252

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  L+N   A     KS             ++VEGYMD ++L QAG+ +VV+SLGT
Sbjct: 253 LFHKGAMLFNAHRAREPAFKS----------GQALVVEGYMDAIALYQAGILHVVASLGT 302

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A TE Q+  LW+ +P  ++CFDGD  G+ AA++AID +   L  G    F  L  G DPD
Sbjct: 303 AFTEDQILRLWRFAPEPMVCFDGDAAGISAAHRAIDRIFPVLKSGYSFQFNFLPDGMDPD 362

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G   F     +S  L D++W RE      +TP+ +A LE    + I  I+D ++
Sbjct: 363 DLVKQRGVEGFWAEAEKSRNLFDVVWDREISVARLDTPERKAALEKRFDDLIGTIRDDRV 422

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   ++ +L  LF +        G+    +          +R+  S           
Sbjct: 423 KRRYQLDLKFKLSNLFFELSRNDRKGGKKPGADPSANVIGLARERVAVSDDFGI------ 476

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  +L   +  P +L   ++ ++ +   N     +   L              I   
Sbjct: 477 ---ERLVLGLCMRFPDLLDRNFERVSGLPLVNELHIGVRDALCR------------IVDD 521

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
           L      +L+   D  +RD           + + +Q   +  AL  RF LL 
Sbjct: 522 LETAAISDLIASFDDPLRDVMHEMVLETIGLQEQKQA--EFYALNHRFPLLK 571


>gi|295399208|ref|ZP_06809190.1| DNA primase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978674|gb|EFG54270.1| DNA primase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 598

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 165/633 (26%), Positives = 288/633 (45%), Gaps = 46/633 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+ +   + I ++I  YV   ++  N     Y+  CPFH EKTPSF  +  K  
Sbjct: 4   RIPEETIETIRRTVDIVDVISDYVQLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ----TDL 117
           ++CF C   G+  SFL  + G SF+E+V+RLA  A + L  +      K +        +
Sbjct: 59  FHCFGCGAGGNVFSFLMDIEGISFLEAVKRLAVKANIDLSHLQLDDADKSRTNTGETKMM 118

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           +   E+   F+HH L      +    YL  RG     I+ F++GYAP+S     + L  +
Sbjct: 119 VEAHELLKKFYHHLLVNTNEGQEALDYLQARGWTREIIDQFEIGYAPNSWDFAVKLLSGR 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           GFS E + +AGL+I  +N    +DRFR+R++FPI +  G  + F GR L +G+  KYLNS
Sbjct: 179 GFSLELMEKAGLIIRKENGD-YFDRFRHRIMFPILNHHGDTVGFSGRLLGEGQP-KYLNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +FHKGK LYNF  A  +++K             +IL+EG+ DV+S  QAGV + V+
Sbjct: 237 PETAIFHKGKILYNFHQARLHIRK----------HQEVILLEGFADVISAVQAGVAHSVA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GTALTE   R+L +    +++C+DGD  G+ A ++A ++       G  V    +  G
Sbjct: 287 TMGTALTEEHARILRRNVDTVIICYDGDASGIEATFRAAEV---LTEAGCHVKIATIPDG 343

Query: 357 EDPDSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPD +IR YG   F + I+++   L+        + ++    +++      +   I+ +
Sbjct: 344 LDPDEYIRKYGPDRFRRDIIDAGSSLMAFKMMYFRKGKNLQDENDKIRYIEEVLREISKL 403

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +     YY + + D           + + Y    K       ++ P        L++ K
Sbjct: 404 PNPIEWDYYLRQLADEFSLSLSALQEQLNRYKGTVKHAHHIDREETP------KPLLQKK 457

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           L       E  LL  ++    +     +++A   ++  E + + +++++ + E       
Sbjct: 458 LLPAFQNAERMLLAHMLQSRDVAMVVQEKIAG-NFNLEEHRAIAAYIYAFYEEGNDPDVS 516

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +  RL +         L   V +  L     E +  ++    +  L   K         
Sbjct: 517 LLLSRLPD--------DLKPLVTELSLLLINDEVSNQELNDYMKHVLNYPKWL-----ML 563

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +E E++  +   K +    A +   + E+   +
Sbjct: 564 KEKEQEKMEAERKKDFLTAARIAKEIIEMKKML 596


>gi|312110190|ref|YP_003988506.1| DNA primase [Geobacillus sp. Y4.1MC1]
 gi|311215291|gb|ADP73895.1| DNA primase [Geobacillus sp. Y4.1MC1]
          Length = 598

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 165/633 (26%), Positives = 288/633 (45%), Gaps = 46/633 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+ +   + I ++I  YV   ++  N     Y+  CPFH EKTPSF  +  K  
Sbjct: 4   RIPEETIETIRRTVDIVDVISDYVQLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ----TDL 117
           ++CF C   G+  SFL  + G SF+E+V+RLA  A + L  +      K +        +
Sbjct: 59  FHCFGCGAGGNVFSFLMDIEGISFLEAVKRLAVKANIDLSHLQLDDADKSRTNTGETKMM 118

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           +   E+   F+HH L      +    YL  RG     I+ F++GYAP+S     + L  +
Sbjct: 119 VEAHELLKKFYHHLLVNTNEGQEALDYLQARGWTREIIDQFEIGYAPNSWDFAVKLLSGR 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           GFS E + +AGL+I  +N    +DRFR+R++FPI +  G  + F GR L +G+  KYLNS
Sbjct: 179 GFSLELMEKAGLIIRKENGD-YFDRFRHRIMFPILNHHGDTVGFSGRLLGEGQP-KYLNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +FHKGK LYNF  A  +++K             +IL+EG+ DV+S  QAGV + V+
Sbjct: 237 PETAIFHKGKILYNFHQARLHIRK----------HQEVILLEGFADVISAVQAGVAHSVA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GTALTE   R+L +    +++C+DGD  G+ A ++A ++       G  V    +  G
Sbjct: 287 TMGTALTEEHARILRRNVDTVIICYDGDASGIEATFRAAEV---LTEAGCHVKIATIPDG 343

Query: 357 EDPDSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPD +IR YG   F + I+++   L+        + ++    +++      +   I+ +
Sbjct: 344 LDPDEYIRKYGPDRFRRDIIDAGSSLMAFKMMYFRKGKNLQDENDKIRYIEEVLREISKL 403

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +     YY + + D           + + Y    K       ++ P        L++ K
Sbjct: 404 PNPIEWDYYLRQLADEFSLSLSALQEQLNRYKGTVKHAHHIDREETP------KPLLQKK 457

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           L       E  LL  ++    +     +++A   ++  E + + +++++ + E       
Sbjct: 458 LLPAFQNAERMLLAHMLQSRDVAMVVQEKIAG-NFNLEEHRAIAAYIYAFYEEGNDPDVS 516

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +  RL +         L   V +  L     E +  ++    +  L   K         
Sbjct: 517 LLLSRLPD--------DLKPLVTELSLLLINDEVSNQELNDYMRHVLNYPKWL-----ML 563

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +E E++  +   K +    A +   + E+   +
Sbjct: 564 KEKEQEKMEAERKKDFLTAARIAKEIIEMKKML 596


>gi|114570680|ref|YP_757360.1| DNA primase [Maricaulis maris MCS10]
 gi|114341142|gb|ABI66422.1| DNA primase [Maricaulis maris MCS10]
          Length = 613

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 180/621 (28%), Positives = 304/621 (48%), Gaps = 18/621 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    DFI ++   +  S+LIG+ V   R+       ++    PF  E++PSF  ND K 
Sbjct: 1   MRLNEDFIDEIKARVRPSDLIGRSVPLKRQGR-----EFVGLSPFKKERSPSFFVNDEKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF+    GD  ++L  + G SF+E+ +RLA  AG+ LP  DP+ ++K + +  L+  
Sbjct: 56  FYHCFASGKHGDIFTWLEEMEGLSFMEAAERLAGEAGLRLPEPDPESQQKTQHRKSLVEW 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A  FF  +L++ + +    YL  RG+       + +GYAPDSR +L++ L   G   
Sbjct: 116 MGSAQAFFLRALRSPQAEEARLYLKSRGLTGEDCVRYGIGYAPDSRTALKDELVTAGAPV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +IE GLLI+ D+  + YDRFR+R+ FPI   R +++ FGGR LSK    KYLNSPET 
Sbjct: 176 SDLIECGLLIEPDSG-SPYDRFRDRITFPIHDPRNRLVGFGGRALSKEARAKYLNSPETP 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG  LY +  A             +     +I+ EGY+DV++L +AG+++ V+ LGT
Sbjct: 235 IFHKGSVLYRYPEARKAASDP------KQDIRGLIVAEGYLDVIALSRAGLEHGVAPLGT 288

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE Q++LLW+     V+C DGD  G  AA+KA D  L  L PG  + F  +  G+DPD
Sbjct: 289 AITEEQIQLLWRAGGEPVMCLDGDSAGRAAAFKAADRALPLLQPGKTLRFAFMPDGKDPD 348

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G  A   +  E+  L D++W+RE      + PD RA     ++  ++ I D  +
Sbjct: 349 DILREEGANALRAVFRETRSLADLIWEREVLVEPLDDPDRRAGFRRRIRALVSQITDGDI 408

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y +    R+  LF          G+  ++      +        +    + + +   
Sbjct: 409 REEYKREFDQRMDALFGA----RPQSGQRGQRGPWKPGKGVALGATAELRNKQSRQADPT 464

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +     LL+  + +P I   Q + LA +R  +  L +L   +       ++   + +   
Sbjct: 465 ARLGHLLLVAAMEYPEIAASQVETLALLRLGS--LDRLRDAVLDACSSGQFVQTDTLRAE 522

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L + G+   +K+LD + R         EA+     + + +    Y        +++E   
Sbjct: 523 LADAGYAAEIKRLDGERRPMRAELGGMEASPEVRAKAWMRLAHAYMERSEAQTRRDEARA 582

Query: 601 QIAQVTAKGEAEKTAILISIL 621
           ++ +   + ++E+   ++   
Sbjct: 583 RLDEELKQADSERFRQVVDAY 603


>gi|89100478|ref|ZP_01173340.1| DNA primase [Bacillus sp. NRRL B-14911]
 gi|89084821|gb|EAR63960.1| DNA primase [Bacillus sp. NRRL B-14911]
          Length = 603

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 146/631 (23%), Positives = 279/631 (44%), Gaps = 35/631 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 + ++     I+++IG +V   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RISEAKLDEIRQATDIADVIGDHVQLKKQGRN-----YFGLCPFHGENSPSFSVSPEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119
           Y+CF C   G+  SFL    G SF E+  +LA  AG+ L +     ++    +    +I 
Sbjct: 59  YHCFGCGAGGNVFSFLMEHEGYSFQEAAVKLAERAGIQLDIEAASAKQSSLPENLQQMIE 118

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             E+   F+HH L N    +    YL +RG    +IE F++GY+ DS   + + L ++ F
Sbjct: 119 AHELLRKFYHHLLMNTKDGQHALEYLLDRGFTKESIEKFQIGYSLDSWDFVCKFLVKRKF 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           + E +  AGL+I  D   + +DRFR+R++FPI   +G  IAF GR+L  G   KYLNSPE
Sbjct: 179 NPEFMERAGLIIKRDRDGSYFDRFRDRIMFPIFDRKGNTIAFSGRSLGAGNEPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F+K K LYNF  A   ++K          +   +L EG+ DV++  ++ V+N V+++
Sbjct: 239 TAIFNKSKILYNFHLARPAIRK----------THQAVLFEGFADVIAADRSSVENGVATM 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT   + +L + +  + +C+D D+ G+ AA+KA  +       G  +   +L  G D
Sbjct: 289 GTALTPEHVAMLRRNTESVTICYDSDNAGIEAAFKAAKM---LSEAGCGIKVAMLPDGMD 345

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD +I+ +G   F   +I  S+  +   +      +      +R      +   I+ +  
Sbjct: 346 PDDYIKQHGAEKFRNDVIESSITHMAFKFLYYRRGKKLQDEGDRLLYIEEVLKEISLLDK 405

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R +Y + + +      +    E        K+  +        + ++ S   +  L 
Sbjct: 406 AVERDHYMRQLANEFSLSLEALKQEQKQIYFAEKRKNQGSSAPAQKKHMIVSR-RQDSLK 464

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  L+  ++ +     +  + L    ++ ++ Q + ++LF+ + +     P   
Sbjct: 465 PAFHTAERRLIAHMLRNSDTAYKVQELLGGSTFNIDDHQAIITYLFAFYEKGNSPDPSAF 524

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              + +     ++  ++       + S   E    ++    +Q L   K         +E
Sbjct: 525 LNFVEDAKLKRIIADIE-------MMSVNDELTEQELNDYIKQVLNYQKML-----MIKE 572

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            + +  +   + +  + A +   + ++   +
Sbjct: 573 KQAEGKEAERQNDFARAASIAMEIIQLRKLL 603


>gi|197106037|ref|YP_002131414.1| DNA primase [Phenylobacterium zucineum HLK1]
 gi|196479457|gb|ACG78985.1| DNA primase [Phenylobacterium zucineum HLK1]
          Length = 637

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 191/636 (30%), Positives = 310/636 (48%), Gaps = 24/636 (3%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            +   FI+++   +  S++IG+ V   ++       +Y    PF+ EKTPSF  ND KG 
Sbjct: 4   RFDERFIEEIKGRLRPSDVIGKTVKLRKQGR-----EYVGLSPFNKEKTPSFFVNDEKGQ 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           ++ FS    GD ++FL      SF E+V++LAA AG+ LP  DP+  + EK +  L   +
Sbjct: 59  FFDFSSGKTGDIITFLQETERLSFAEAVEKLAAEAGLALPAADPRGAEVEKKRQGLADWL 118

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E+A  +F   LK    +    YL++RG+       F+LG++P  R +L+++L  KG    
Sbjct: 119 ELAAQWFEAELKRPVGRDARAYLEKRGLPEKEWARFRLGFSPSGRTALKDYLVTKGARPA 178

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           +++EAGLLI  ++    YDRFR+R+IFPI  +RG+V++FGGR +      KYLN PET++
Sbjct: 179 ELVEAGLLIAPEDGGAPYDRFRDRIIFPILDARGRVVSFGGRAMDPNARAKYLNGPETVV 238

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHKG NLY    A   L               +++VEGYMDV++  +AG+   V+ +GTA
Sbjct: 239 FHKGNNLYGLSEARKIL-----AAAPTGDEPPLVVVEGYMDVIACQRAGIP-SVAPMGTA 292

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE Q+ +LW+  P   LCFDGD  G +AA +AID  L  L PG    F L+  G+DPD 
Sbjct: 293 LTEEQMEVLWRHHPEPTLCFDGDRAGRQAAGRAIDRALPLLKPGKSFKFALVEGGKDPDD 352

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +R  G  A +  + ++ P  + L+ RE +    +TP+ R  L++ L+     I D  L 
Sbjct: 353 VLREQGPAALKSQLEKTTPFAEALFVRERDLEPLDTPERRTALKVRLRKLAATIADPDLA 412

Query: 422 YYYSQAIRDRLQQLFQKYITEHS-GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
             Y + +  R +QL+      ++ G         R   +   +    ++      L   P
Sbjct: 413 QAYKEDLLGRFEQLWPTQQPVYTVGAAGRELSRHRWAKKGALAGASPETKQAAQDLKASP 472

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
               AAL +  ++ P+++    + +    + +  L  +   L     E      + + +R
Sbjct: 473 RPLAAALAVAALHDPSLIDNSIELVGARGFGDERLDAIAQALVQIRYETDEAEFDGVVRR 532

Query: 541 LCERGFG-ELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           L  RG   EL+ +L+R  R AG+ +   +  A    VR  + QA  L  +   L R    
Sbjct: 533 LRSRGVSQELIAKLERDARRAGVSAPFLDATAARDRVRALWSQAFELLMKLEALERAVAS 592

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
               +A+  +           + L  +  +   +  
Sbjct: 593 AVGDMARDPSAA---------AALINLKAERDHLRK 619


>gi|257055422|ref|YP_003133254.1| DNA primase [Saccharomonospora viridis DSM 43017]
 gi|256585294|gb|ACU96427.1| DNA primase [Saccharomonospora viridis DSM 43017]
          Length = 657

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 135/653 (20%), Positives = 241/653 (36%), Gaps = 45/653 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I  ++G+YV   R       G     CPFH+EKTPSF+   + G 
Sbjct: 24  RIRESDIAQVRERNRIDEIVGEYVALRRAG----GGALKGLCPFHEEKTPSFNVRPTHGT 79

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD + F+  +    F+E+V+RLA   G+ L         +     +  L+ 
Sbjct: 80  FHCFGCGEGGDVIKFVMQIEHLGFVEAVERLADRIGLQLTYEGGGSSVRRDRGTRLRLVE 139

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             + A  F+   L     +    +L ERG D      F  GYAP     L +HL + GF 
Sbjct: 140 AHKAAQAFYAEQLTTPEAEAARAFLTERGFDQSTWTKFGCGYAPAGWDRLTKHLLRSGFE 199

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK--YLNSP 237
             ++  A L  +        DRF  RL++PI+   G V+ FG R L   + ++  YLN+ 
Sbjct: 200 LSELYRAQLSKE--GRRGPIDRFHRRLVWPIKDRGGDVVGFGARRLFDDDPIQAKYLNTS 257

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++ K + L+    A   + +             +++VEGY DV+++  AGV   V++
Sbjct: 258 ESPIYKKSQVLFGLDQAKREIAR----------RHQVVVVEGYTDVMAMHAAGVPTAVAT 307

Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA  E  +R+L +L          ++  FDGD+ G +AA KA +          +   
Sbjct: 308 SGTAFGEDHMRVLRQLMMDDDAFRGEVIFTFDGDEAGQKAALKAFEGDQTFAG---QTYI 364

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G  A   L+   +PL +   K    +   ++ D +         
Sbjct: 365 AIAPDGMDPCELRLAKGDAAVRDLVARRIPLFEFAIKSLLASYDLDSVDGQVAALQRTVP 424

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR---------DQKG 461
            +  IKD+  R  Y+  +   +    +  +               +             G
Sbjct: 425 LVAQIKDRAKRDGYATKLAWWVGWQDEAMVVRRVRETADGAPARTNGTRRSSARAGRAGG 484

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
                    L +          +  +L   +  PA+   +Y  L +  + +     +   
Sbjct: 485 ARGNGTGGQLERPDPRNPDLRAQREVLKAALQEPALAGPEYDALPEDAFTHPAYVGVHRA 544

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L +            + +          +  L  ++    L          D    Y  +
Sbjct: 545 LLAAGGTGSGLSGSALIEAASAHASDRTVVSLLSELAVEPLQ------AKDDADVRYVSS 598

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +    +  L+ RQ  E++ ++ +++    AE+   L   L  +      +  Q
Sbjct: 599 VLAAVQENLVGRQIGELKSRLQRLSPVDAAEEYRALFGDLVALEQYRKALREQ 651


>gi|72161270|ref|YP_288927.1| DNA primase [Thermobifida fusca YX]
 gi|71915002|gb|AAZ54904.1| DNA primase [Thermobifida fusca YX]
          Length = 656

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 158/651 (24%), Positives = 273/651 (41%), Gaps = 47/651 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + +  +    PI++++G+Y+       NA  G     CPFHDEKTPSF+   ++  
Sbjct: 40  RIKDEDVALVRERSPIADVVGEYLQL----RNAGGGSLKGLCPFHDEKTPSFNVTPARNL 95

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIR 119
           +YCF C   GD +SF+  +   SF+E+V+ LA  AG+ L         + +   +  L+ 
Sbjct: 96  WYCFGCGEGGDVISFIQKIEHLSFVEAVEHLARAAGIQLRYEQGGYVPRNEQGQRQRLVD 155

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              VA +F+   L +   +    +L ERG      E F +GYAP S  +L  HLR KGF+
Sbjct: 156 AHRVAAEFYAEQLLSPEAQAGRRFLVERGFTRADAEHFGVGYAPASWNALLSHLRAKGFT 215

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           +++I+ AGL          YDRFR RL++P+R   G V+ FG R L   ++  KYLN+PE
Sbjct: 216 DQEIVLAGLASQ--GRRGPYDRFRGRLVWPVRDLSGDVVGFGARKLDPEDTGPKYLNTPE 273

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF K   LY    A   + +              ++VEGY DV++   AGV   V++ 
Sbjct: 274 TPLFKKSSLLYGLDLAKKEIARQ----------RQAVIVEGYTDVMACHLAGVTTAVATC 323

Query: 299 GTALTEYQLRLL-------WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GT+  E  L++L       ++    ++  FDGD  G  AA +A                 
Sbjct: 324 GTSFGEEHLKILRRLLLGRFEFGGEVIFTFDGDQAGRNAALRAFAEEHGFAS---ETFVA 380

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP       G  A   LI    PL + + + + E  + +TP+ R          
Sbjct: 381 VQPDGLDPCDLRVQRGDAAVRDLIAAKQPLYEFMIRSKFEGYNLDTPEGRLAALDAAAPI 440

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  I++  +R  Y  ++   L  + ++++       R  +   R R ++ P +    +  
Sbjct: 441 VASIRNAGVRRLYGVSLDRWLGIMDEEFVHR-----RIQEHMRRARGRRVPPKPATAAPA 495

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            +  L      RE   L   + HP +L   +  L    +   + + ++  +      Q  
Sbjct: 496 PRYDLRDPVVQRERLALKLAVQHP-LLCSGFDHLDADMFTVEQHRDVFHLIQKAGGTQSV 554

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
             P     +L E        + + Q       +        ++ +   Q +    R   +
Sbjct: 555 QDPALWAGQLRET------ARNEAQRTFLTQLAVEPIEIYGELDEYRAQEIISTIRIHSI 608

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           +RQ   ++ +++++    +AE+   + + L     Q   +       E FG
Sbjct: 609 NRQITNLKSRLSRLDPVADAEEYQRIFTELMTAEQQKRMMR------ERFG 653


>gi|92118366|ref|YP_578095.1| DNA primase [Nitrobacter hamburgensis X14]
 gi|91801260|gb|ABE63635.1| DNA primase [Nitrobacter hamburgensis X14]
          Length = 633

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 199/638 (31%), Positives = 320/638 (50%), Gaps = 35/638 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  FI ++   +P+S ++ + V   R        ++    PF  EKTPSF  ND K 
Sbjct: 1   MRFPPSFIDEVKARLPVSEVVSRRVKLKRAGR-----EFKGLSPFQQEKTPSFTVNDQKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+ FS    G+   F+    G SF E+V+RLAA+AG+PLP    + E++E+ Q  L  +
Sbjct: 56  FYHDFSTGKHGNIFDFVMETEGVSFPEAVERLAAMAGLPLPRNSREDEQREQRQKSLFEV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT +F  +L +    +   YL +R I   +I  F++GYA   R++L+E+L  KG   
Sbjct: 116 MELATTYFEQNLASRGGAQARGYLSDRAIAPSSIVEFRIGYATADRFALKEYLGSKGVPV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E +IEAGLLI GD+    YDRFR+R++ PI   RG+V+ FGGR L +    KYLNSPET 
Sbjct: 176 EDMIEAGLLIAGDDIPVPYDRFRDRVMIPIHDQRGRVVGFGGRALRQDVQPKYLNSPETS 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG  ++NF  A                ++ ++ VEGYMD +++ QAG++ VV+++GT
Sbjct: 236 IFHKGSIVFNFHRARQPAH----------EANSVVAVEGYMDAIAVYQAGIKAVVATMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A TE Q+  LW+LSP  V+CFD D  G+ AAY++ID +L  L  G    FV +   +DPD
Sbjct: 286 AFTEEQIATLWRLSPEPVVCFDSDRAGIAAAYRSIDRILPLLRVGKTFRFVFMDEQKDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  AF  ++  SLPL D+LW+RET+ +   TPD +A LE  L   +  I+D  +
Sbjct: 346 DLIREKGVEAFRSVLSGSLPLWDVLWQRETDGQDVRTPDRQAALEQKLYALVRTIQDPAV 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              + +  R +L  LF               +  R   +K        +  +K     + 
Sbjct: 406 NTAFFRTSRMQLANLF--------------WQVNRGPTRKNKEAGSKFNPQLKLDGEGQR 451

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           S  +  +L  L+ +P +L+++   +  +++   +L    + LF   V        +I  +
Sbjct: 452 SGLQKVVLGMLVEYPELLEDKRDSVLRLQFP-EKLDVFLTSLFQLLVTDAKLSVSDIWTK 510

Query: 541 LCERGFGELL----KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           L    +  L     +  D +     L+      +           L  + +        +
Sbjct: 511 LKPAFYDTLQTVHGEAGDGKRLGHRLFERFPILSRDPPSDFVSGCLDHFIKILHRHELDD 570

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +I++       +G+    A L+S++ E H +   I ++
Sbjct: 571 DIQRARLDA-GQGDESAVARLLSLVREGHAEQEGISAE 607


>gi|212638698|ref|YP_002315218.1| DNA primase [Anoxybacillus flavithermus WK1]
 gi|212560178|gb|ACJ33233.1| DNA primase (bacterial type) [Anoxybacillus flavithermus WK1]
          Length = 604

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 158/631 (25%), Positives = 290/631 (45%), Gaps = 41/631 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +   + I ++I QYV   ++  N     Y+  CPFH EKTPSF  +  K  
Sbjct: 4   RIPEETVEHIRRSVDIVDVIQQYVSLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRL 120
           Y+CF C   G+  SFL  + G SFI++V+RLA  A V L   VD  +  +      +I  
Sbjct: 59  YHCFGCGAGGNVFSFLMEIEGISFIDAVKRLAPKANVDLSHIVDDHLPTERTEVATMIAA 118

Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E+   F+HH L      +    YL +RG     IE F++GYA  +  +    L  KGFS
Sbjct: 119 HELLKKFYHHLLMHTNEGEEALNYLLQRGFTREIIEQFEIGYALPTWNAAVTFLTNKGFS 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              +  AGL++      + +DRFR+R++FPI +  G+ +AF GR +   E  KYLNSPET
Sbjct: 179 LPLMERAGLIVRKSEEDSYFDRFRHRIMFPIHNHHGETVAFSGRAI-GNEEPKYLNSPET 237

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K   LY+F  A   +++             ++L EG+ DV++  QAG+ + V+++G
Sbjct: 238 PIFNKRNILYHFHEARLPMRQK----------QQVVLFEGFADVIAAVQAGISHAVATMG 287

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TAL+E Q R+L + +  +++C+DGD  G+ AA +A +     +  G  V   ++  G DP
Sbjct: 288 TALSEEQARMLRRNASSVIVCYDGDRAGIDAALRASE---TLMEAGCYVKVAMIPDGLDP 344

Query: 360 DSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D ++R YG   F   ++++ L L     +     R      ER          I+ +   
Sbjct: 345 DEYVRKYGADRFRHHVLDASLSLTAFKLEYLKRGRHLQNESERLRYIEEAVKEISRLSSA 404

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
               YY + + D           + + +G+  +       ++   +R       K KL  
Sbjct: 405 IEADYYLRQLADEFSLSLDALREQMTIHGKKQQ------IERKQERRETVILSAKAKLLP 458

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E  L+  ++   +I     + +    ++  E + + +++++ + E        + 
Sbjct: 459 AFQKAERMLIAHMLRDKSIAFTVQEAIEG-AFNIEEHRAIAAYVYAFYEEGHEPDVSSLL 517

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           +R+ +     ++ +L        +     + +  +++  Y Q +  Y + +LL ++    
Sbjct: 518 ERIHDSQLKRIVTEL-------SMMPINEDISSAELQD-YIQCVLNYPKEQLLKQK---- 565

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           E Q+ +   + + E+   + S +  +   +H
Sbjct: 566 EAQLREAERQKDYERAKRIASEMIAMRKSLH 596


>gi|149183341|ref|ZP_01861779.1| DNA primase [Bacillus sp. SG-1]
 gi|148848938|gb|EDL63150.1| DNA primase [Bacillus sp. SG-1]
          Length = 601

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 164/630 (26%), Positives = 291/630 (46%), Gaps = 35/630 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I ++   I I ++I  YV   ++  N     Y+  CPFH E TPSF  +  K  
Sbjct: 4   RIPEEKINEIRQSIDIVDVISDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRL 120
           ++CF C   G+  +FL  + G SF E+V +LA   G  L V   P      + +  +I  
Sbjct: 59  FHCFGCGAGGNAYTFLMDIDGISFQEAVVKLAEKTGQELSVDVSPVETPASRDEEKMIEA 118

Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E+ + F+HH L      +    YL +RG    +I+ F++G++  S       L ++GF+
Sbjct: 119 HELLSKFYHHLLVNTKEGQDALEYLLQRGFTRESIDKFQIGWSLPSWEFTVNFLTKRGFA 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            E + +AGLL+  +     +DRFR R++FPI   RG+ IAF GR +   E  KYLNSPET
Sbjct: 179 PELMEQAGLLVKREGEEQYFDRFRGRIMFPIHDHRGKTIAFSGRAM-GEEQPKYLNSPET 237

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           I+F+K   LYNF  A   +++           S  +L EG+ DV+S  +AGV+N ++S+G
Sbjct: 238 IIFNKSSVLYNFHNARPVIRR----------RSQAVLFEGFADVISADRAGVENGIASMG 287

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT   +++L +++  I++C+DGD  G+ AA++A  +          +   ++    DP
Sbjct: 288 TSLTPKHMQMLKRVTDSIIICYDGDKAGMEAAFRAAKM---LSEDQFNLRVAMIPEKLDP 344

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D +I+ Y    F+  +I  SL  +        + ++ N   +R +    +   I+ +++ 
Sbjct: 345 DDYIKKYSGEKFQNDVIGASLTFMAFKLIYFRQGKNLNDEGDRLQYIEEVLREISSLQNH 404

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R YY + + D      Q    +        KK+ +   +K    + MQ    + KL  
Sbjct: 405 IERDYYLRQLADEFSLSLQALQQQQKQVYFSNKKSDKREQRKQDFVQPMQPK-AENKLFP 463

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E  L+  ++ +P I  +    L    ++ +E Q + ++LF  + E          
Sbjct: 464 AYHTAERRLIAHMMKNPDICFKVQDLLGGNSFNLDEHQAIITYLFGYYEEGNEADSSGFI 523

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           Q L +        +L R V + G+ S + E +  ++     Q L   K   +  +Q  + 
Sbjct: 524 QFLPD-------NRLRRVVSEIGMMSVSEECSEQELIDYVNQVLKHQKMLTIKEKQLAQ- 575

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                +   + +  K A++   + ++   +
Sbjct: 576 ----KEAERQKDYNKAALIAMEIVQLRRSL 601


>gi|258542086|ref|YP_003187519.1| DNA primase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633164|dbj|BAH99139.1| DNA primase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636221|dbj|BAI02190.1| DNA primase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639276|dbj|BAI05238.1| DNA primase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642330|dbj|BAI08285.1| DNA primase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645385|dbj|BAI11333.1| DNA primase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648440|dbj|BAI14381.1| DNA primase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651493|dbj|BAI17427.1| DNA primase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654484|dbj|BAI20411.1| DNA primase [Acetobacter pasteurianus IFO 3283-12]
          Length = 613

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/630 (27%), Positives = 286/630 (45%), Gaps = 32/630 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M     F+ +L    PI++++G+ V   R   N     +  CCPFH EKTPSF+  D   
Sbjct: 1   MAIDSAFLDELRARTPIASVVGRRVKLARSGRN-----WKGCCPFHGEKTPSFYVYDDH- 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++CF C V GD +SF+  + G +F E+V+ LA+ AG+ +P    + +++      L  +
Sbjct: 55  -FHCFGCGVHGDVISFVMQMEGKNFPEAVEELASSAGMEVPKDTRRTQEEVAHVRSLEDV 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +    + + H+L     +    YL  RG+    +E F LG+A + R  L   L  KG + 
Sbjct: 114 LAATQEIWSHALYKPEGRAGLDYLLGRGLTRETLETFGLGWASERRGELVSALAPKGITP 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E + EAGL+   ++     + F  R+ FPIR  +G++++FGGR L      KYLN PET 
Sbjct: 174 EMMAEAGLMRVDEHGHPKGELFWGRVTFPIRDRKGRLVSFGGRIL-GDGQPKYLNGPETP 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + L+                 +   +  +++VEGYMDV++L QAG    V+ LGT
Sbjct: 233 VFSKRRLLFGLDR---ARAAVRAPRPKGVLAPDLVVVEGYMDVIALHQAGFTGAVAPLGT 289

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  QL  LW++    +LCFDGD  G RAA KA +  L  L     +   LL  G+DPD
Sbjct: 290 ALTPEQLEALWQVDRAPILCFDGDAAGRRAAVKAAETGLPLLKQDYSLRICLLPDGDDPD 349

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S +R  G+ A  ++   + PL ++L+   +   +   P+ERA L   L      I D+ L
Sbjct: 350 SLVRTRGRQAVAEMFAAAQPLSEVLFDLLSAGINNPGPEERAALRRRLTEVAALIPDKML 409

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y   + DR    F           R       +  Q   S               + 
Sbjct: 410 ASEYRSTLLDRFFTTF-----------RRGGGGKWNGPQGRKSNAPASVPGAVPVNMDQT 458

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL-PEEIHQ 539
             R+  +L  L+ HP ++ E  + L  +     E  ++ +FL     E +       ++ 
Sbjct: 459 RERQRLMLELLLFHPVLVPEVEEALCRLDLP-EEFAEVRAFLLDLSAEGELPDNAAALYA 517

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS--RQKEE 597
            L   G  E ++ + R+      +SA +E++  D           +  + LL   +  +E
Sbjct: 518 WLQAEGAEETIRAVMRES-----YSAMSESDAEDPAHTVAARTQWWHFYGLLYGPQFIQE 572

Query: 598 IEKQIAQV-TAKGEAEKTAILISILHEVHI 626
           + ++IA+     G++ +   L + L  +  
Sbjct: 573 VNREIARFVEKGGDSAEWQRLQARLEAMER 602


>gi|119386780|ref|YP_917835.1| DNA primase [Paracoccus denitrificans PD1222]
 gi|119377375|gb|ABL72139.1| DNA primase [Paracoccus denitrificans PD1222]
          Length = 646

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 218/634 (34%), Positives = 316/634 (49%), Gaps = 36/634 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ ++   +P+S +IG+ V WD R++N  KGD+WA CPFH EKTPSFH +D KG
Sbjct: 1   MSLPPQFLDEIRARVPLSRVIGRKVVWDLRRSNQAKGDWWAPCPFHGEKTPSFHVDDQKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD L+FL    G  FIE+V+ LAA AG+P+P  DP+  ++   +T+L+ +
Sbjct: 61  FYYCFGCHAKGDALTFLREAEGLGFIEAVELLAAEAGLPMPERDPRQVQRADHRTELVDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  +F   L     +    YL  RG+D  A E F +G+APD R  L   LR KG +E
Sbjct: 121 MEQAVRWFRMQLGMGVAEAARAYLARRGLDDAACERFGIGFAPDQRQGLFNALRAKGIAE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + I+EAGL    ++    +DRFR R+ FPIR  RG+ IAFGGR +      KYLNSPET 
Sbjct: 181 QLIVEAGLAAKPEDGGAPFDRFRGRITFPIRDGRGRCIAFGGRAMDPNARAKYLNSPETP 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+NLYN   A   + K             +++ EGYMDV++L +AG +  V+ LGT
Sbjct: 241 LFDKGRNLYNIGPARAAVAK----------GRPLVVAEGYMDVIALVRAGFEGAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QLRL+W++SP  V+  DGD+ GLRAA + IDL L    PG  + F  L +G+DPD
Sbjct: 291 AITEDQLRLMWRISPEPVIALDGDEAGLRAAMRLIDLALPMTGPGQALRFAFLPQGQDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  A   ++ E+ PLVD+LW+RETE R F++P+ RA L+  L   +  I D+  
Sbjct: 351 DLIRARGAGAMAAVLDEARPLVDLLWRRETEGRVFDSPERRAALDKALGEAVAKIPDKDT 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSG---------YGRYWKKNARHRDQKGPSQRLMQSSL 471
           R +Y   +R+   +LF       +           GR W+          P      S L
Sbjct: 411 RDHYHAVLRNLKWELFGNRRRSDAPAAARPARDWKGREWQGGGARFQPVAPVAPTRASRL 470

Query: 472 --VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                   +  +L EA +L     HP ++      L  +   + +   L           
Sbjct: 471 SSPGAGEHEAETLVEAMVLAICATHPGLIAPVESRLERLEPQDADRAAL----------- 519

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 ++      +     L+ +          +     +          AL   +  R
Sbjct: 520 ----IHDLLSGTQSQAGQRALESIMSDPHVRAAPAILRPHDGDAAADILANALDRIESRR 575

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
               +    E +I  +  +G   + A       +
Sbjct: 576 SAREEIARAEAEIEGLADEGLTWRMAQSARARQQ 609


>gi|19553466|ref|NP_601468.1| DNA primase [Corynebacterium glutamicum ATCC 13032]
 gi|62391109|ref|YP_226511.1| DNA primase [Corynebacterium glutamicum ATCC 13032]
 gi|21325039|dbj|BAB99661.1| DNA primase (bacterial type) [Corynebacterium glutamicum ATCC
           13032]
 gi|41326448|emb|CAF20610.1| DNA PRIMASE [Corynebacterium glutamicum ATCC 13032]
          Length = 633

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 143/645 (22%), Positives = 257/645 (39%), Gaps = 40/645 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +    PI  ++G YV                  PF DEKTPSFH   ++G+
Sbjct: 7   RIPESDIQAIRERTPIEEIVGDYVQLKSAGA----DSLKGLSPFKDEKTPSFHVRPNRGY 62

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           Y+CFS    GD  SFL  +   SF E+V+  A   G  +        ++E+   +  LI 
Sbjct: 63  YHCFSTGKGGDVFSFLMEMEHISFPEAVEVCAEKIGYQINYQGGGPGRREEPGTRQRLIL 122

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             + A  F+   L+    +    +L +RG     I  F+ GYAP    +L +HL +KGF 
Sbjct: 123 ANKAAHQFYREQLETPEAQPGREFLLQRGFGQQHIYHFECGYAPAGWDTLTKHLLKKGFE 182

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238
            +++  AGL           D+F+ RL++PI++  G VI FG R L   + + KY+N+PE
Sbjct: 183 FKELEAAGLSK--MGKRGPIDQFQRRLLWPIKNLSGDVIGFGARKLFDDDKMGKYMNTPE 240

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T+L+ K K L+    A   +           +    ++VEGY DV+++  AG+   V+S 
Sbjct: 241 TLLYKKSKVLFGLDSAKKAIA----------AGHQAVVVEGYTDVMAMHAAGIDTAVASC 290

Query: 299 GTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  E  L++L             ++  FDGD+ G +AA +A +          +    
Sbjct: 291 GTAFGEEHLQMLRRLMLDDNYFRGELIYTFDGDEAGQKAAMRAFEGDQKFTG---QSFVS 347

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP       G  A   L+   +P+ + + +      + +T + R          
Sbjct: 348 VAPNGMDPCDLRLERGDAAVRDLVARRIPMFEFVIQSIISEYTLDTVEGRLAALRRAVPI 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ-KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
           +  I+D+ L+  Y++ +   +      + + +     R  K++ +    K   Q L   S
Sbjct: 408 VADIRDKTLQSEYARLLSGWVGWSDPSEVLRQVHEEARRPKRDKKPVRAKRFDQPLEDQS 467

Query: 471 LVKGKLSKKPSL----REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
           L        P      +E   L   + +P +    +  L    + N   + +   + +  
Sbjct: 468 LRPTMALPNPRNPVLWQERESLKIALQYPELAGSYFDGLPTDSFTNPAYRMVRDAISAAG 527

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             ++     +    + E     L   L   V +  +     EA      + Y   +    
Sbjct: 528 GCERALDGTDWLPAVSENMTDILGTSL---VSELAMEPIEVEAQD---LESYTDGVLSRL 581

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +   +  Q   ++ Q+ ++    + +    L S L  +     ++
Sbjct: 582 QETRVGNQIAILKGQLQRMRPSEDEQAYNSLFSDLVALEQARREL 626


>gi|145296223|ref|YP_001139044.1| DNA primase [Corynebacterium glutamicum R]
 gi|140846143|dbj|BAF55142.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 633

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 143/645 (22%), Positives = 258/645 (40%), Gaps = 40/645 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +    PI  ++G YV                  PF DEKTPSFH   ++G+
Sbjct: 7   RIPESDIQAIRERTPIEEIVGDYVQLKSAGA----DSLKGLSPFKDEKTPSFHVRPNRGY 62

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           Y+CFS    GD  SFL  +   SF E+V+  A   G  +        ++E+   +  LI 
Sbjct: 63  YHCFSTGKGGDVFSFLMEMEHISFPEAVEVCAEKIGYQINYQGGGPGRREEPGTRQRLIL 122

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             + A  F+   L+    +    +L +RG     I  F+ GYAP    +L +HL +KGF 
Sbjct: 123 ANKAAHQFYREQLETPEAQPGREFLLQRGFGQQHIYHFECGYAPAGWDTLTKHLLKKGFE 182

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238
            +++  AGL           D+F+ RL++PI++  G VI FG R L   + + KY+N+PE
Sbjct: 183 FKELEAAGLSK--MGKRGPIDQFQRRLLWPIKNLSGDVIGFGARKLFDDDKMGKYMNTPE 240

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T+L+ K K L+    A   +           +    ++VEGY DV+++  AG++  V+S 
Sbjct: 241 TLLYKKSKVLFGLDSAKKAIA----------AGHQAVVVEGYTDVMAMHAAGIETAVASC 290

Query: 299 GTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  E  L++L             ++  FDGD+ G +AA +A +          +    
Sbjct: 291 GTAFGEEHLQMLRRLMLDDNYFRGELIYTFDGDEAGQKAAMRAFEGDQKFTG---QSFVS 347

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP       G  A   L+   +P+ + + +      + +T + R          
Sbjct: 348 VAPNGMDPCDLRLERGDAAVRDLVARRIPMFEFVIQSIISEYTLDTVEGRLAALRRAVPI 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ-KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
           +  I+D+ L+  Y++ +   +      + + +     R  K++ +    K   Q L   S
Sbjct: 408 VADIRDKTLQSEYARLLSGWVGWSDPSEVLRQVHEEARRPKRDKKPVRAKRFDQPLEDQS 467

Query: 471 LVKGKLSKKPSL----REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
           L        P      +E   L   + +P +    +  L    + N   + +   + +  
Sbjct: 468 LRPTMALPNPRNPVLWQERESLKIALQYPELAGSYFDGLPTDSFTNPAYRMVRDAISAAG 527

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             ++     +    + E     L   L   V +  +     EA      + Y   +    
Sbjct: 528 GCERALDGTDWLPAVSENMTDILGTSL---VSELAMEPIEVEAQD---LESYTDGVLSRL 581

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +   +  Q   ++ Q+ ++    + +    L S L  +     ++
Sbjct: 582 QETRVGNQIAILKGQLQRMRPSEDEQAYNSLFSDLVALEQARREL 626


>gi|16800560|ref|NP_470828.1| DNA primase [Listeria innocua Clip11262]
 gi|20139534|sp|Q92BQ5|PRIM_LISIN RecName: Full=DNA primase
 gi|16413965|emb|CAC96723.1| DNA primase [Listeria innocua Clip11262]
          Length = 626

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/649 (24%), Positives = 291/649 (44%), Gaps = 51/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +     I ++IG YV   ++  N     Y   CPFH EKTPSF  +  K  
Sbjct: 3   RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQT 115
           ++CF C   G+  SFL    G +F+ESV+++A ++ + + +  P+        K+     
Sbjct: 58  FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVDIELPEERDTSNLPKETSETA 117

Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            ++ + ++    +H+ L           YL ERG+    +  F++G+AP+   ++   L 
Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGAAALTYLKERGMSEQMMASFQIGFAPNHHATITSFLE 177

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           ++G   +    AGLL + D+     DRFRNR++FPI + RGQ+ AF GR   + +  KYL
Sbjct: 178 KRGMDLQLAGTAGLLSERDDG-QMVDRFRNRIMFPITNDRGQINAFSGRLFDRDDGPKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +F+K + L++F  A   ++K             I L+EG+MDV+S  +AGVQN 
Sbjct: 237 NSPETPIFNKRRTLFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GT+LTE    L+ +L+ R ++C+DGD  G+ AAYKA  L++           + L 
Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344

Query: 355 RGEDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            G+DPD FIR  G   F+++   + +           + R+     ++          I 
Sbjct: 345 AGKDPDDFIRASGADKFKEIYKQQRMTWTAFKINYLRKERNLQNETDKIAYIDDCLREIA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463
            +     R  Y + + D  +   +    +     +   K  ++     P           
Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNTHKERQNHSYNEPPIDDSFMGMIP 464

Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                ++ S     K     +  E  L+  ++ +        Q L D  + ++  Q L++
Sbjct: 465 QEDSEMLFSFEQPTKKLSAHTTAEQQLMKAMMENRDSFLLIKQLLGDTEFYHDNYQALYT 524

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
           +L   F E     P +    + + G   L+  L+  +                 +  ++ 
Sbjct: 525 YLIGYFAEGNDADPHKFMDSVPDAGMKGLISSLEMVIS-----------PDEQGKTQFED 573

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +   KRF+ L + K+E+E+Q+A    + + E    ++  + +++ +++
Sbjct: 574 YIKSLKRFK-LEQAKKELEQQLAAFNRENDKENEIRVMLEIVQLNRKLN 621


>gi|291299310|ref|YP_003510588.1| DNA primase [Stackebrandtia nassauensis DSM 44728]
 gi|290568530|gb|ADD41495.1| DNA primase [Stackebrandtia nassauensis DSM 44728]
          Length = 616

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 151/648 (23%), Positives = 260/648 (40%), Gaps = 51/648 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + +  +     I+ +IG++V           G+    CPFHDE+TPSF+   SKGF
Sbjct: 4   RIRGEDVALVRERTDIAEVIGEHVTLKPAG----GGNLKGLCPFHDERTPSFNVTPSKGF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-----IQTD 116
           ++CF C   GD +SFL+ L   SF E+V+RLA+ AGV L   D       +      +  
Sbjct: 60  FHCFGCGAGGDAISFLTELEHLSFAEAVERLASKAGVTLHYEDTDGRSSSRSQQPGRKQR 119

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L+     A  F+   L +   +    +L ERG D  A E F  G+AP    +L +HLR +
Sbjct: 120 LLAAHTEAAKFYSEQLASPEARIARDFLSERGFDRDAAESFGCGFAPPGWDALTKHLRGR 179

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLN 235
           GF+ +++ E GL      S +  DRFR RL++PI    G +I FG R LS+ ++  KYLN
Sbjct: 180 GFTPDELTEGGLA-KPARSGSLIDRFRGRLVWPIHDLTGGIIGFGARRLSEDDNGPKYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +PET L+ K + LY    A   + K             +++VEGY DV++   AGV   V
Sbjct: 239 TPETPLYKKSQVLYGIDAAKREIAK----------RRQVVVVEGYTDVMACHLAGVPTAV 288

Query: 296 SSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           ++ GTA     + +L +           ++  FDGD+ G +AA KA       +    + 
Sbjct: 289 ATCGTAFGSDHINVLRRLLMDSDEFKGEVIFTFDGDEAGQKAALKAFGDEQRFVA---QT 345

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
              +   G DP       G  A  +L+     LVD        +   ++ + R       
Sbjct: 346 YIAVSPGGMDPCELRMAQGDEAVRELVAGREHLVDFAIATTLASYDLDSVEGRVAALRAT 405

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              +  IKD+ L   Y+Q +  RL +                    R        Q   Q
Sbjct: 406 APLVARIKDKSLHPGYTQRLAGRLGEDVDLVR--------------RWVHAARSKQAPPQ 451

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           +   + K++    L E  +L   + HP +    + E+ +  + +     +   + +    
Sbjct: 452 AGPARRKVTGPRLLSERDVLKLAVQHPEMAGPYFDEVDETYFSDPMHVVVRRAIANAGGA 511

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                       + +                    +        +    Y        ++
Sbjct: 512 AAAASGPNWGMAISDACGD------LAAAALVAELAVEPLRIDGEPDTRYVATALAGVQW 565

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            ++  Q  E++ ++ ++  + ++E    L   L  +  ++  ++ + A
Sbjct: 566 PVVEEQVAELKSKLQRMNPETDSEGYMKLFGELMALEQRLRGLKERAA 613


>gi|163841637|ref|YP_001626042.1| DNA primase [Renibacterium salmoninarum ATCC 33209]
 gi|162955113|gb|ABY24628.1| DNA primase [Renibacterium salmoninarum ATCC 33209]
          Length = 631

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/652 (23%), Positives = 268/652 (41%), Gaps = 45/652 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L     I  ++  YV           G +   CPFHDE++PSF+     G Y
Sbjct: 5   IKQEDIEELRARTDIKEVVEGYVTLKSAG----VGSWKGLCPFHDERSPSFNVRPQVGRY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119
           +CF C   GD +SF+  +   SF E+V++LAA  G  L   D     + +    +  L+ 
Sbjct: 61  HCFGCGEGGDVISFVQKVDHLSFSETVEKLAARIGFELHYEDGGSGPRREETGRRQRLLD 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             +VA +FF   L          +L  RG D  A E F +G+AP     L +HLR +G+S
Sbjct: 121 AHKVAAEFFRDQLLTPGAAAGRQFLSGRGFDRAAAEQFGVGFAPQGWDGLLKHLRGQGYS 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPE 238
           +E++   G+   G +    +DRFR RLI+PIR   G+ I FG R L  + +  KYLN+PE
Sbjct: 181 DEELRLTGMFSTGSSGDRLFDRFRGRLIWPIRDIAGETIGFGARKLFEEDQGPKYLNTPE 240

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TIL+ K   LY    A   + K             +++VEGY DV++   +GV   V++ 
Sbjct: 241 TILYKKSHVLYGIDLAKKAISK----------GRQLVVVEGYTDVMACHLSGVGTAVATC 290

Query: 299 GTALTEYQLRLLWK------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           GTA  E  +++  +          ++  FDGD  G  AA KA  L    +    +    +
Sbjct: 291 GTAFGEDHIKVARRLLSDDGTGGEVIFTFDGDAAGQNAALKAFSLDQRFVA---QTYVAV 347

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G+DP    +  G  A + LI    PL +   +    +   +  + R +        +
Sbjct: 348 EPSGQDPCDLRQSGGSEAVQALIASRRPLFEFAIRSALSHFDLSAVEGRVQGLRAAAPVV 407

Query: 413 NHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
             I+D   R  YSQ +   L      ++ +   T    + R  +K  + +  +  S    
Sbjct: 408 AEIRDGSTRVGYSQELAGWLGIADPNEVLRAVTTAAKNHTRSQQKALQAQPGQTESTAAP 467

Query: 468 QSSLV----KGKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFL 522
             +      +       +  E   L  ++  PA+L E  +    +I++     + +   L
Sbjct: 468 NPAQPLAFNRTDPRDPAARMERQGLEVVLQQPALLSEADWLNFNEIQFVVPAYRAVHEAL 527

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            +              Q++ E      L+ L  ++    L ++  E  +   R   +  L
Sbjct: 528 HAAGR--PSTDTGAWLQKITEEAPEP-LRPLVSELSMTPLPASNDEGLLNYCRSMLRSLL 584

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +      L+R K E    + ++    +      L   L ++ +Q   +  +
Sbjct: 585 EM-----QLTRAKAEKLGALQRMDPALDPAGYQQLQRELMQLEVQRRVLREE 631


>gi|205374115|ref|ZP_03226915.1| DNA primase [Bacillus coahuilensis m4-4]
          Length = 603

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 151/631 (23%), Positives = 297/631 (47%), Gaps = 38/631 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + + ++   + I ++I  YV   ++  N     Y+  CPFH E TPSF  +  K  
Sbjct: 4   RIPDEKVNEIRQSVDIVDVISDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIR 119
           ++CF C   G+ LSFL  + G SF E+++ +A  +G+ + V  P     ++   Q  +  
Sbjct: 59  FHCFGCGAGGNVLSFLMDIEGSSFTEALKSVADRSGIAVDVSFPTDAADQESPEQKSIFE 118

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             E+ + F+HH L    + +    YL  RG     I+ F +G++  S     + L+++GF
Sbjct: 119 AHELLSKFYHHLLVNTKQGQDALDYLQNRGFTLDTIKEFNIGWSVPSWDFTVKFLKKRGF 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S +++ EAGL+I      + +DRFR+R++FPI   +G++IAF GR+L   E+ KYLNSPE
Sbjct: 179 SLDEMEEAGLVIRK-EDGSYFDRFRSRIMFPIWDEKGRIIAFSGRSL-NDETPKYLNSPE 236

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F+K + LYNF  A   ++KS            +IL EG+ DV+S   A V   ++++
Sbjct: 237 TKVFNKSQILYNFHRARPAIKKS----------RQVILFEGFADVISAYAANVHTGLATM 286

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT+  ++ + +++  +VL FDGD+ G++AAY++  +       G  V    +    D
Sbjct: 287 GTSLTDQHIQSIKRMAETVVLAFDGDNAGIQAAYRSAKM---LTDKGMSVRIAEIPDRLD 343

Query: 359 PDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD +IR YG   F E +I  ++  +          ++     ++ +    +   I+H++ 
Sbjct: 344 PDDYIRKYGGERFSESVIGAAVTFMAFKLSYFKIGKNLQNEGDQLKYIEEILREISHLQS 403

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R  Y + + +  +  ++    + +      +K    +       +L      K KL 
Sbjct: 404 PVERDLYLKQLSEEFEISYEALKQQQTAMYFSERKRDPSQFVSKKVAQL--PLEKKNKLL 461

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  L+  ++ +  +  +    L+   ++ +E Q ++++L + + E         
Sbjct: 462 PAYINAERYLIAYMLKNEDVTYKVKDLLSGESFNIDEHQAIFTYLLAYYEEGNLPSASSF 521

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              + +     L+ +++       + +  TE N V++       +   K+ ++L+    E
Sbjct: 522 LSFISDDKLRRLVSEIE-------MLTIQTEMNPVELTDYVHSVI---KQQKMLT--IRE 569

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            E +  +     +  K A +   + +++ ++
Sbjct: 570 KEAEKKEAEKHKDYIKAAEIAMDIIKLNKEL 600


>gi|315303192|ref|ZP_07873850.1| DNA primase [Listeria ivanovii FSL F6-596]
 gi|313628435|gb|EFR96910.1| DNA primase [Listeria ivanovii FSL F6-596]
          Length = 626

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 159/649 (24%), Positives = 287/649 (44%), Gaps = 51/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +     I ++IG YV   ++  N     Y   CPFH EKTPSF  +  K  
Sbjct: 3   RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YAGLCPFHGEKTPSFSVSPEKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVVDPKI--EKKEKIQT 115
           ++CF C   G+  SFL    G +F+E+V+++A ++     + LP         K+     
Sbjct: 58  FHCFGCGKGGNVFSFLMEHDGLTFVEAVKKVADMSHLDVAIELPEERDTAHLPKETSETA 117

Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            ++ + ++    +H+ L           YL ERG+    +  F++G+AP+   ++   L 
Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMANFQIGFAPNHHATVTSFLE 177

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           ++G   +    AGLL + D+     DRFRNR+I PI + RGQ+IAF GR   + +  KYL
Sbjct: 178 KRGMDLQLAGTAGLLSERDDG-QMVDRFRNRIIIPITNDRGQIIAFSGRLFDRDDGPKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET LF+K + L++F  A   ++K             I L+EG+MDV+S  +AG+QN 
Sbjct: 237 NSPETPLFNKRRTLFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGIQNA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GT+LTE    L+ +L+ R ++C+DGD  G+ AAYKA  L++           + L 
Sbjct: 287 VASMGTSLTEEHADLIKRLTSRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344

Query: 355 RGEDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            G+DPD FIR  G   F+++   + +             R+     ++          I 
Sbjct: 345 AGKDPDDFIRSSGADKFKEIYKQQRMTWTAFKIHYLRRERNLQNETDQIGYIDDCLREIA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463
            +     R  Y + + D  +   +    +     +  +K+ +      P           
Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSIKTSQKSRQTASYNEPPIDDSFMGIVP 464

Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                ++ S     +     +  E  L+  ++          Q L +  + ++  Q L++
Sbjct: 465 QENPEILFSFEQPTQKLSAHTTAEQQLMKAMMESRDSFLLIKQLLGETEFYHDNYQALYT 524

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
           +L   F E     P +    + +     L+  L+  +                 R  ++ 
Sbjct: 525 YLIGYFAEGNDADPNKFMDSVQDVAMKGLISSLEMVIS-----------PEEQGRLQFED 573

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +   KRF+ L ++K+E+E+++A      + E    ++  + +++ Q++
Sbjct: 574 YIRSLKRFK-LEQKKKELEQELAGYNRDNDKENEIRVMLEIVQLNRQLN 621


>gi|297248757|ref|ZP_06932475.1| DNA primase [Brucella abortus bv. 5 str. B3196]
 gi|297175926|gb|EFH35273.1| DNA primase [Brucella abortus bv. 5 str. B3196]
          Length = 492

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 217/458 (47%), Positives = 297/458 (64%), Gaps = 5/458 (1%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG  V +DR+K+N  KGD+WACCPFH EKTPSFHC D KG
Sbjct: 37  MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 96

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P  DP++EK+E  +  L  +
Sbjct: 97  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 156

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L++A   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 157 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 216

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 217 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 276

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A    Q           +  II VEGYMDV++L QAG+ +VV+ LGT
Sbjct: 277 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 331

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  +LCFDGD  GLRAAY+A DL L  L PG  + F LL  G+DPD
Sbjct: 332 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 391

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G +AF  ++ ++ PLV+M+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 392 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 451

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           R +YSQ +R+R Q  F +        G+  +   R  +
Sbjct: 452 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNE 489


>gi|332980899|ref|YP_004462340.1| DNA primase [Mahella australiensis 50-1 BON]
 gi|332698577|gb|AEE95518.1| DNA primase [Mahella australiensis 50-1 BON]
          Length = 589

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/631 (26%), Positives = 285/631 (45%), Gaps = 48/631 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           + R+++ ++     I ++IG+Y+       N     + A CPFH+EKTPSF  +  K  Y
Sbjct: 5   FDREWVDEVRSRNDIVDVIGEYLKLKPSGRN-----FMALCPFHNEKTPSFSVSPDKQIY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G+ + F+ A+    F E+V+ LA  AG+P+P    +       +  L RL  
Sbjct: 60  HCFGCGAGGNVIGFIMAMERVDFTEAVKLLAKRAGIPIPENYMRGA-VADAREALYRLNT 118

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +FH  L++   K    YL  RG+++  I  F LG+AP     L++HL   G+ ++ 
Sbjct: 119 ETARYFHRCLRSDEGKAAREYLMRRGVEAKTIVKFGLGFAPAKWDGLKQHLLSLGYDQKH 178

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++++GL++       SYDRFRNR++FPI   R ++I FGGR L      KYLNSP+T LF
Sbjct: 179 MLDSGLIVASKAGDQSYDRFRNRVMFPIFDVRKRIIGFGGRVL-DDSLPKYLNSPDTALF 237

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           HKG+NLY                        II+VEGYMD + L Q GV N V+SLGTAL
Sbjct: 238 HKGQNLYALDIVAKA-----------RDLECIIVVEGYMDAVMLHQYGVDNAVASLGTAL 286

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE Q +L+ + + +I++C+DGD  G +AA + +D+    L  G  V  + L  G DPD F
Sbjct: 287 TEEQAKLMKRYAQKIIICYDGDIAGKKAATRGLDI---LLNQGLDVYVLTLPDGVDPDEF 343

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +R +GK AF + +  + P +D            +T + +          +  I D   + 
Sbjct: 344 VRKHGKDAFLRSVRSAKPWLDYSMDVLASRYDISTTNGKTSFAKEAVKLLGGINDPIQKD 403

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + I        +                      K  + R+ +              
Sbjct: 404 LYLKGIERYSGVSLEIL---------------YGYMNKSKTARISKEGQGVAHKISAVQK 448

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  LL  + N P +     Q +    ++N   +K++  +   + + +   P ++     
Sbjct: 449 AEQELLNIMANQPEMAAIIMQRITADDFENELHKKIFDIMSERYKKGEKPSPADVFSYF- 507

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                     L  +   + L   T E    ++ +   Q +   KR ++  ++ + + K+ 
Sbjct: 508 ----------LGEKAEKSVLSIFTNEPRYDNINKFAAQCINTIKRNKIAMKR-QFLCKKA 556

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             + + G+ E   IL+  ++ +  ++  ++ 
Sbjct: 557 DDLASAGDREALNILLEQINALDKELLDLKE 587


>gi|256375413|ref|YP_003099073.1| DNA primase [Actinosynnema mirum DSM 43827]
 gi|255919716|gb|ACU35227.1| DNA primase [Actinosynnema mirum DSM 43827]
          Length = 629

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 145/647 (22%), Positives = 252/647 (38%), Gaps = 40/647 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I +++G +V   R       G     CPFHDEK+PSF+   S G 
Sbjct: 4   RIRETDIALVRDRSSIEDVVGDHVSLRRAG----GGSLKGLCPFHDEKSPSFNVRPSHGT 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD ++F+  +    F+ESV+RLA  AG+ L         +     ++ L+ 
Sbjct: 60  FHCFGCGEGGDVIAFIMKIEHLGFVESVERLADRAGIQLTYEGGGATIQRDRGTRSRLLE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A +F+   L          +L +RG D  A   F  G+AP     L +HL  +GF 
Sbjct: 120 AHRAAAEFYAEQLATPDAMPAREFLAQRGFDEAAARQFGCGFAPHGWDKLTKHLLGRGFE 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK--YLNSP 237
             ++I+A L  +        DRF  RL++PIR   G V+ FG R +   + ++  YLN+ 
Sbjct: 180 LTELIKAQLTKE--GRQGPIDRFHRRLLWPIRDLGGDVVGFGARRIFDDDPIQAKYLNTS 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++ K   L+    A   + K              ++VEGY DV+++  AGV   V+S
Sbjct: 238 ESPIYKKSHVLFGLDLAKREIAK----------RRQAVVVEGYTDVMAMHLAGVPTAVAS 287

Query: 298 LGTALTEYQLRLLWK------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
            GTA     + +L +      ++  ++  FDGD  G +AA KA +          +    
Sbjct: 288 CGTAFGADHMNVLRRLLIDDSVNGEVIFTFDGDAAGQKAALKAFEGEQQFSA---QTYIA 344

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP    +  G  A   L+    PLV+   K +  +   ++ D RAE    +   
Sbjct: 345 VAPDGMDPCELRQEKGDVAVRDLVARRTPLVEFAIKAQLRDYDLDSVDGRAEALRKMVPF 404

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ----KYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
           +  IKD   R  Y+  +   +    +    + + E +          R  D    +  + 
Sbjct: 405 VAQIKDSSKRDGYATRLAWWVGWEDEASVVRRVRETATGTAKAAPRRRPVDPNQGALDVA 464

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             +  +          +   L   +  P ++   Y  L D  + N     L   L     
Sbjct: 465 VDAPPRPNPRDPALWHQREALKAALQVPEMVSPYYDSLPDEAFTNPLYLALHRALREAGG 524

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                    +   + +       + L  ++    L +   E         Y Q++    +
Sbjct: 525 TASGLTGPALVDAVGQACPVPSARPLLTELAVEPLRTKGDEY-------RYVQSVLARLQ 577

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             L+  Q  EI+ ++ +V+   EA++   L   L  +     ++  Q
Sbjct: 578 QVLVGAQITEIKSRLRRVSPIEEADEYRALFGDLIALEEYHKELGQQ 624


>gi|261418499|ref|YP_003252181.1| DNA primase [Geobacillus sp. Y412MC61]
 gi|319767540|ref|YP_004133041.1| DNA primase [Geobacillus sp. Y412MC52]
 gi|261374956|gb|ACX77699.1| DNA primase [Geobacillus sp. Y412MC61]
 gi|317112406|gb|ADU94898.1| DNA primase [Geobacillus sp. Y412MC52]
          Length = 598

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 162/632 (25%), Positives = 270/632 (42%), Gaps = 45/632 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+ +   + I ++IG+YV   ++  N     Y+  CPFH EKTPSF  +  K  
Sbjct: 4   RIPEETIEAIRRGVDIVDVIGEYVQLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDL 117
           ++CF C   G+  +FL  + G  F+E+ +RLAA AG+ L   +         +      +
Sbjct: 59  FHCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAKAGIDLSAYELDSRGSDGSRADEAKAM 118

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           +    +   F+HH L      +    YL  RG     I+ F++GYAPD   +  + L  +
Sbjct: 119 VEAHTLLKRFYHHLLVHTKEGQAALDYLQVRGWTKETIDRFEIGYAPDVPDAAVKLLESR 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            F    + +AGLL+         DRFRNR++FPI   RG+ + F GR L      KY+NS
Sbjct: 179 SFPLVLMEKAGLLVKK-EDGRYVDRFRNRIMFPIHDHRGETVGFSGRLL-GDGQPKYMNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F KG  LY F  A   ++K              +LVEG+ DV+S  QAGV  VV+
Sbjct: 237 PETPIFRKGTLLYFFHEARMSIRK----------RQEALLVEGFADVISAVQAGVDYVVA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT+LTE Q R+L + +  + +C+DGD  G  AA++A +        G RV   LL  G
Sbjct: 287 TMGTSLTEEQARILRRHAETVTICYDGDSAGTEAAWRAAE---QLSAFGCRVKVALLPDG 343

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +IR  G   F + I  + PL+     R    ++     +R          I+ + 
Sbjct: 344 LDPDEYIRTSGADRFAEEIAAARPLMAFKMDRLRRGKNLQEEGDRLRYIEEALREISKLS 403

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               + YY + + D           + S       K   +   K     L +      KL
Sbjct: 404 SPVEKDYYMRQLADEFSLSLSALYEQLSRSKPEQPKPQVNDGGKPSQPALTK------KL 457

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++    +     +++   R++  E + L +++++ + E     P  
Sbjct: 458 LPAFQNAERLLLAHMMRSRDVAFIVQEKVGG-RFNIEEHRALAAYIYAFYEEGHEADPSA 516

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +  RL          +L     +  L     + +  ++    +  L   K         +
Sbjct: 517 LMSRLPG--------ELRTLASELSLLLVADDVSERELADCIRHVLNHPKWL-----MLK 563

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           E E++  +   + +    A +   + E+   +
Sbjct: 564 EKEQEKTEAERRKDFLTAARIAKEMIEMKKML 595


>gi|56421018|ref|YP_148336.1| DNA primase [Geobacillus kaustophilus HTA426]
 gi|56380860|dbj|BAD76768.1| DNA primase [Geobacillus kaustophilus HTA426]
          Length = 598

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 162/632 (25%), Positives = 269/632 (42%), Gaps = 45/632 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+ +   + I ++IG+YV   ++  N     Y+  CPFH EKTPSF  +  K  
Sbjct: 4   RIPEETIEAIRRGVDIVDVIGEYVQLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDL 117
           ++CF C   G+  +FL  + G  F+E+ +RLAA AG+ L   +         +      +
Sbjct: 59  FHCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAKAGIDLSAYELDSRGSDGSRADEAKAM 118

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           +    +   F+HH L      +    YL  RG     I+ F++GYAPD   +    L  +
Sbjct: 119 VEAHTLLKRFYHHLLVHTKEGQAALDYLQVRGWTKETIDRFEIGYAPDVPDAAVRLLESR 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            F    + +AGLL+         DRFRNR++FPI   RG+ + F GR L      KY+NS
Sbjct: 179 SFPLVLMEKAGLLVKK-EDGRYVDRFRNRIMFPIHDHRGETVGFSGRLL-GDGQPKYMNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F KG  LY F  A   ++K              +LVEG+ DV+S  QAGV  VV+
Sbjct: 237 PETPIFRKGTLLYFFHEARVSIRK----------RQEALLVEGFADVISAVQAGVDYVVA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT+LTE Q R+L + +  + +C+DGD  G  AA++A +        G RV   LL  G
Sbjct: 287 TMGTSLTEEQARILRRHAETVTICYDGDSAGTEAAWRAAE---QLSAFGCRVKVALLPDG 343

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +IR  G   F + I  + PL+     R    ++     +R          I+ + 
Sbjct: 344 LDPDEYIRTCGADRFAEEIAAARPLMAFKMDRLRRGKNLQEEGDRLRYIEEALREISKLS 403

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               + YY + + D           + S       K   +   K     L +      KL
Sbjct: 404 SPVEKDYYMRQLADEFSLSLSALYEQLSRSKPEQPKPQVNDGGKPVRPALTK------KL 457

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++    +     +++   R++  E + L +++++ + E     P  
Sbjct: 458 LPAFQNAERLLLAHMMRSRDVAFIVQEQVGG-RFNIEEHRALAAYIYAFYEEGHEADPSA 516

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +  RL          +L     +  L     + +  ++    +  L   K         +
Sbjct: 517 LMSRLPG--------ELRTLASELSLLLVADDVSDRELADCIRHVLNHPKWL-----MLK 563

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           E E++  +   + +    A +   + E+   +
Sbjct: 564 EKEQEKTEAERRKDFLTAARIAKEMIEMKKML 595


>gi|300788424|ref|YP_003768715.1| DNA primase [Amycolatopsis mediterranei U32]
 gi|299797938|gb|ADJ48313.1| DNA primase [Amycolatopsis mediterranei U32]
          Length = 637

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 137/652 (21%), Positives = 254/652 (38%), Gaps = 41/652 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I ++     I  ++G+YV   R       G     CPFH+EKTPSF+   + G 
Sbjct: 7   RIRESDIAEVRERNRIDEVVGEYVALRRAG----GGSLKGLCPFHNEKTPSFNVRPTHGT 62

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD + F+  +   +F+E+V+RLA   G+ L         +     +T L+ 
Sbjct: 63  FHCFGCGEGGDVIKFVQKIDLITFVEAVERLADRVGIRLTYEGGGATIQRDRGSRTRLVE 122

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              +A +F+   L     +    +L ERG D+   + F  GYAP     L + L  +GF 
Sbjct: 123 AHRLAQEFYAEQLVTDEARPARDFLSERGFDAAMAKTFGCGYAPGGWDKLTKFLLNRGFE 182

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            ++++ AGL  +G       DRF  RL++PIR     V+ FG R L   + +  KYLN+ 
Sbjct: 183 VKELLTAGLSKEGQR--GPMDRFHRRLVWPIRDVGNDVVGFGARRLFDDDRISAKYLNTA 240

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++ K + ++    A   + K             +++VEGY DV+++  +GV   V+S
Sbjct: 241 ESPIYKKSQVMFGLDLAKREIAK----------RHQVVVVEGYTDVMAMHASGVPTAVAS 290

Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA  E  +++L +L          ++  FDGD+ G +AA KA +          +   
Sbjct: 291 SGTAFGEDHMKVLRRLMMDDDAFRGEVIFTFDGDEAGQKAALKAFEGDQTFAG---QTYI 347

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G +A + L+    PL + + +   +N   ++ D +         
Sbjct: 348 AVAPDGMDPCELRLAKGDSAVKDLVARRTPLFEFVIRSTLKNYDLDSVDGQVAALQKTVP 407

Query: 411 CINHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
            +  IKD+  R  Y+  +   +      Q+  +         +      R   + G  + 
Sbjct: 408 MVASIKDRAARDGYASKLAWWVGWQDVAQVVNRVRGSAGATDKRGGAPLRQPARVGAPEA 467

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                + +          +   L   +  PAI   +Y  L    + +     +   +   
Sbjct: 468 PAAQDVARPAPKDPRFAVQREALKAALQQPAIAGPEYDALPLEAFTHPVYVAVHEAVLKA 527

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
                      +            ++++  ++    L          +V   Y  ++   
Sbjct: 528 GGAGSGLTGPALLDAAAPHCPEGTVRRVLSELAVEPLQ------AKDEVDSRYISSILAR 581

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            +  L+ RQ  EI+ ++ +++     +    L   L  +      +  Q A 
Sbjct: 582 LQEGLVGRQIAEIKGKLQRLSPVEAPDDYRALFGDLVALEQYKKSLGEQAAA 633


>gi|259503186|ref|ZP_05746088.1| DNA primase [Lactobacillus antri DSM 16041]
 gi|259168843|gb|EEW53338.1| DNA primase [Lactobacillus antri DSM 16041]
          Length = 623

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 155/648 (23%), Positives = 277/648 (42%), Gaps = 43/648 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR  I ++   + I ++IG+YV   +   N     +   CPFH+E+TPSF  N  K +
Sbjct: 3   RIPRTVIDEVRNSVDIVDVIGRYVQLKKAGKN-----FTGLCPFHNEQTPSFSVNAEKQY 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+   FL      SF+E+V  +A  AG+ LP       D      +     
Sbjct: 58  YHCFGCGRSGNVFQFLMDYQHISFVEAVTAVAKDAGISLPDQYVQSADRPTTPADSENGQ 117

Query: 117 LIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L++L + A + +H+ L      +    YL  RG+    I+ F+LG+AP+    L+ +  +
Sbjct: 118 LLQLHQKAAELYHYILVGTPAGEAGLRYLTRRGVSRELIDQFQLGFAPEQ-QVLKAYCDK 176

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKY 233
           +    + + ++GL  +       +DRF  R+++PI++ RGQVIAF GR LS  ++   KY
Sbjct: 177 EKLDYQLLRKSGLFTEDHAG-QLHDRFAERVMYPIKNRRGQVIAFSGRLLSTDQTDLPKY 235

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET LF+K + L+N   A    ++  +          + L EG+MDV+S   AGVQ 
Sbjct: 236 LNSPETPLFNKRRTLFNLDQARKAARQDGK----------LYLFEGFMDVISAFGAGVQA 285

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            ++S+GT+ TE Q+ ++ + + ++ +C+DGD  G  A  +AI LV        +V  V L
Sbjct: 286 GIASMGTSFTEEQVGIIHRTTTQLNICYDGDQAGQNAIDRAIKLVESQPTGNLQVRVVQL 345

Query: 354 SRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
             G DPD +++ +G   F + L  +    VD   +   + R+ +   +R +    +   I
Sbjct: 346 PAGVDPDEYVQRFGAEKFRQYLASQEETTVDFYLRFLRQGRNLDQQGDRMDYLNQVLKVI 405

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +     +  Y   +            ++ +        N     Q    +   Q  + 
Sbjct: 406 AKVPTPLEQDLYLTKLAQEFSLDKAALQSQLTQLSSRSGGNQPRSGQDYRGRVTDQPPVA 465

Query: 473 KGKLSKKP-----SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             +   +       L E  LL  +++   +            + +   Q L+    S F 
Sbjct: 466 AVEARPQIKISRAELAEQMLLYYMLHSQEVWAHVTAT-TGFHFVHERYQTLYLLAASYFT 524

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E   +   +    L E      L Q+++   +  +     +             + +  R
Sbjct: 525 EHGDYSVADFLNYLNEDELRLTLSQVEQLRINPAVQMPVVD-----------DCMRIITR 573

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
              L  Q ++++KQ+ +       E    L   L  +  +  Q +++E
Sbjct: 574 QTPLDDQIDQVQKQLREANTLNNTELVMKLTVKLVNLLKEQQQYKAEE 621


>gi|312869078|ref|ZP_07729252.1| DNA primase [Lactobacillus oris PB013-T2-3]
 gi|311095324|gb|EFQ53594.1| DNA primase [Lactobacillus oris PB013-T2-3]
          Length = 623

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/648 (24%), Positives = 281/648 (43%), Gaps = 43/648 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR  I ++   + I ++IG+YV   +   N     +   CPFH+E+TPSF  N  K +
Sbjct: 3   RIPRAVIDEVRNSVDIVDVIGRYVQLKKAGKN-----FTGLCPFHNEQTPSFSVNAEKQY 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+   FL      +F+E+V  +A  AG+ LP       +      +     
Sbjct: 58  YHCFGCGRSGNVFQFLMDYQHINFVEAVAAVAKDAGISLPEQYVQSSNHPAAPVDSETGQ 117

Query: 117 LIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           LI+L + A + +H+ L      +   +YL  RG+    I+ F+LG+AP+    L+ +  +
Sbjct: 118 LIQLHQKAAELYHYILVGTPAGEAGLHYLTRRGVSRELIDQFQLGFAPEQ-QVLKAYCDK 176

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--KGESVKY 233
           +    + + ++GL  +       +DRF NR+++PI++ RGQVIAF GR LS    +  KY
Sbjct: 177 EKLDYQLLRKSGLFTEDREG-QLHDRFANRVMYPIKNRRGQVIAFSGRLLSTVNTDLPKY 235

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +F+K + L+N   A    ++  +          + L EG+MDV+S   AGVQ 
Sbjct: 236 LNSPETPIFNKRRTLFNLDVARKAARQDGK----------LYLFEGFMDVISAFGAGVQG 285

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+S+GT+ TE Q+  + + + ++ +C+DGD  G  A  +AI LV        +V  V L
Sbjct: 286 GVASMGTSFTEEQVGTIHRTTTQLDICYDGDSAGQNAIDRAIKLVESQQTGNLQVRVVQL 345

Query: 354 SRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
             G DPD +++ +G   F + L  +    VD   +   + R+ +   ER +    +   I
Sbjct: 346 PAGIDPDEYVQRFGPEKFRQYLASQEETTVDFYLRFLRQGRNLDQQGERMDYLNQVLKVI 405

Query: 413 NHIKDQKLRYYYSQAIRDRLQ----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
             +        Y   +          L  +     +  G    + A  +  +  SQ    
Sbjct: 406 ATVPTPLEEDLYLSKLAQEFSLDKAALQSQLAQVRAQTGIRQPRPAPGQRNQLTSQSPAA 465

Query: 469 SSLVKGKLS-KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
               + ++   +  L E  LL  +++   +        A   + +   Q L+    S F 
Sbjct: 466 VVESRPQVKISRAELAEQMLLYYMLHSQEVWAHVTAT-AGFHFVHERYQTLYLLAASYFT 524

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E   +   +    L E      L Q+++   +  +     +             + +  R
Sbjct: 525 EHGDYSVADFLNYLNEDELRTTLSQIEQLRVNPAVQMPVID-----------DCMHIITR 573

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
              L  Q  +++KQ+ +       E    L   L ++  +  Q +++E
Sbjct: 574 QTPLDDQINQVQKQLREANTLNNTELVMKLTVKLVDLLKEQQQYKAEE 621


>gi|297529351|ref|YP_003670626.1| DNA primase [Geobacillus sp. C56-T3]
 gi|297252603|gb|ADI26049.1| DNA primase [Geobacillus sp. C56-T3]
          Length = 598

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 162/632 (25%), Positives = 270/632 (42%), Gaps = 45/632 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+ +   + I ++IG+YV   ++  N     Y+  CPFH EKTPSF  +  K  
Sbjct: 4   RIPEETIEAIRRGVDIVDVIGEYVQLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDL 117
           ++CF C   G+  +FL  + G  F+E+ +RLAA AG+ L   +         +      +
Sbjct: 59  FHCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAKAGIDLSAYELDSRGSDGSRADEAKAM 118

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           +    +   F+HH L      +    YL  RG     I+ F++GYAPD   +  + L  +
Sbjct: 119 VEAHTLLKRFYHHLLVHTKEGQAALDYLQVRGWTKETIDRFEIGYAPDVPDAAVKLLESR 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            F    + +AGLL+         DRFRNR++FPI   RG+ + F GR L      KY+NS
Sbjct: 179 SFPLVLMEKAGLLVKK-EDGRYVDRFRNRIMFPIHDHRGETVGFSGRLL-GDGQPKYMNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F KG  LY F  A   ++K              +LVEG+ DV+S  QAGV  VV+
Sbjct: 237 PETPIFRKGTLLYFFHEARVSIRK----------RQEALLVEGFADVISAVQAGVDYVVA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT+LTE Q R+L + +  + +C+DGD  G  AA++A +        G RV   LL  G
Sbjct: 287 TMGTSLTEEQARILRRHAETVTICYDGDSAGTEAAWRAAE---QLSAFGCRVKVALLPDG 343

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +IR  G   F + I  + PL+     R    ++     +R          I+ + 
Sbjct: 344 LDPDEYIRTCGADRFAEEIAAARPLMAFKMDRLRRGKNLQEEGDRLRYIEEALREISKLS 403

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               + YY + + D           + S       K   +   K     L +      KL
Sbjct: 404 SPVEKDYYMRQLADEFSLSLSALYEQLSRSKPEQPKPQVNDGGKPAQPALTK------KL 457

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++    +     +++   R++  E + L +++++ + E     P  
Sbjct: 458 LPAFQNAERLLLAHMMRSRDVAFIVQEKVGG-RFNIEEHRALAAYIYAFYEEGHEADPSA 516

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +  RL          +L     +  L     + +  ++    +  L   K         +
Sbjct: 517 LMSRLPG--------ELRTLASELSLLLVADDVSERELADCIRHVLNHPKWL-----MLK 563

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           E E++  +   + +    A +   + E+   +
Sbjct: 564 EKEQEKTEAERRKDFLTAARIAKEMIEMKKML 595


>gi|25028725|ref|NP_738779.1| DNA primase [Corynebacterium efficiens YS-314]
 gi|259507786|ref|ZP_05750686.1| DNA primase [Corynebacterium efficiens YS-314]
 gi|23494011|dbj|BAC18979.1| putative DNA primase DnaG [Corynebacterium efficiens YS-314]
 gi|259164579|gb|EEW49133.1| DNA primase [Corynebacterium efficiens YS-314]
          Length = 645

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 140/646 (21%), Positives = 255/646 (39%), Gaps = 41/646 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +    PI  ++G YV                  PF DEKTPSFH   ++G+
Sbjct: 18  RIPESDIQAIRERTPIEEIVGDYVQLKSAGA----DSLKGLSPFKDEKTPSFHVRPNRGY 73

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           Y+CFS    GD  SFL  +   SF E+V+  A   G  +        ++E+   +  LI 
Sbjct: 74  YHCFSTGKGGDVYSFLMEMEHISFPEAVEVCAEKIGYQINYQGGGPGRREEPGTRQRLIA 133

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             + A  F+   L+    +    +L +RG     I  F+ GYAP    +L +HL +KGF 
Sbjct: 134 ANKAAHQFYREQLETPEAQPGRDFLLQRGFSKEHIYHFECGYAPAGWDTLTKHLLKKGFE 193

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238
             ++  AGL           D+F+ RL++PI++  G VI FG R L   + + KY+N+PE
Sbjct: 194 FRELEAAGLSK--MGRRGPIDQFQRRLLWPIKNLAGDVIGFGARKLFDDDKMGKYMNTPE 251

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T+L+ K K L+    A   +            S   ++VEGY DV+++  AG+   V+S 
Sbjct: 252 TLLYKKSKVLFGLDTAKRAIA----------QSHQAVVVEGYTDVMAMHAAGINTAVASC 301

Query: 299 GTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  +  L++L             ++  FDGD+ G +AA +A +          +    
Sbjct: 302 GTAFGDEHLQMLRRLMLDDNYFRGELIYTFDGDEAGQKAAMRAFEGDQKFTG---QSYVA 358

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  +G DP       G  A   L+   +P+ + + +        +T + R          
Sbjct: 359 VAPQGMDPCDLRLERGDAAVRDLVASRVPMFEFVIQSIISEYPLDTVEGRLNALRRAVPI 418

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------DQKGPSQR 465
           +  I+D+ L+  Y++ +   +       + +         K  + +      D +    +
Sbjct: 419 VAGIRDRTLQSEYARLLAGWVGWPDPAEVLQQVHEEVRRPKPQKRQMRATRFDAQNLEDQ 478

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
             +  +V          +E   L   + HP +    +  LA   + N   + +   + + 
Sbjct: 479 SSRPQMVMPDPRNPALWQERESLKIALQHPELAGSYFDGLAVDCFTNPAYRMVRDAITAA 538

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
              ++     +   R+ E     L   L   V +  +     EA      + Y   +   
Sbjct: 539 GGCEQATGGVDWLPRVSENMADILGTSL---VSELAMEPIEVEAQD---LESYTDGVLSR 592

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            +   +  Q   ++ Q+ ++    + +    L + L  +     ++
Sbjct: 593 LQETRVGNQIAVLKSQLQRMRPSDDEQAYNSLFADLVALEQARREL 638


>gi|116872886|ref|YP_849667.1| DNA primase [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741764|emb|CAK20888.1| DNA primase [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 626

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 160/649 (24%), Positives = 292/649 (44%), Gaps = 51/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +     I ++IG YV   ++  N     Y   CPFH EKTPSF  +  K  
Sbjct: 3   RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQT 115
           ++CF C   G+  SFL    G +F+ESV+++A ++ + + +  P+        K+     
Sbjct: 58  FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVDIELPEERDTSNLPKETSETA 117

Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            +I + ++    +H+ L           YL ERG+  H +  F++G+AP+   ++   L 
Sbjct: 118 KMIEMHQLTAKLYHYILMETEEGAAALTYLKERGMSEHMMASFQIGFAPNHHATITSFLE 177

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           ++G   +    AGLL + D+     DRFRNR++FPI + RGQ+IAF GR   + +  KYL
Sbjct: 178 KRGMDLQLAGMAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +F+K + L++F  A   ++K             I L+EG+MDV+S  +AGVQN 
Sbjct: 237 NSPETPIFNKRRTLFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GT+LTE    L+ +L+ R ++C+DGD  G+ AAYKA  L++           + L 
Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344

Query: 355 RGEDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            G+DPD FIR  G   F+++   + +           + R+     ++          I 
Sbjct: 345 AGKDPDDFIRASGADKFKEIYKQQRMTWTAFKINYLRKERNLQNETDQIAYIDDCLREIA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463
            +     R  Y + + D  +   +    +     +  +K+ +      P           
Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNAQKSRQITSYNEPPIDDSFMGMIP 464

Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                ++ S     +     +  E  L+  ++ +        Q L +  + ++  Q L++
Sbjct: 465 QEDSEMLFSFEQPTQKLSAHTTAEQQLMKAMMENRDSFLLIKQLLGETEFYHDNYQALYT 524

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
           +L   F E     P +    + +     L+  L+  +                 +  ++ 
Sbjct: 525 YLIGYFAEGNEADPNKFMDSVPDAAMKGLISSLEMVIS-----------PDEQGKTQFED 573

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +   KRF+ L + K ++E+Q+A    + + E    ++  + +++ Q++
Sbjct: 574 YIRSLKRFK-LEQTKRKLEQQLAAFNRENDKENEIRVMLEIVQLNRQLN 621


>gi|47095406|ref|ZP_00233016.1| DNA primase [Listeria monocytogenes str. 1/2a F6854]
 gi|254827743|ref|ZP_05232430.1| DNA primase [Listeria monocytogenes FSL N3-165]
 gi|254829786|ref|ZP_05234441.1| DNA primase [Listeria monocytogenes 10403S]
 gi|254898379|ref|ZP_05258303.1| DNA primase [Listeria monocytogenes J0161]
 gi|254912129|ref|ZP_05262141.1| DNA primase [Listeria monocytogenes J2818]
 gi|254936457|ref|ZP_05268154.1| DNA primase [Listeria monocytogenes F6900]
 gi|284801842|ref|YP_003413707.1| DNA primase [Listeria monocytogenes 08-5578]
 gi|284994984|ref|YP_003416752.1| DNA primase [Listeria monocytogenes 08-5923]
 gi|47016227|gb|EAL07150.1| DNA primase [Listeria monocytogenes str. 1/2a F6854]
 gi|258600122|gb|EEW13447.1| DNA primase [Listeria monocytogenes FSL N3-165]
 gi|258609049|gb|EEW21657.1| DNA primase [Listeria monocytogenes F6900]
 gi|284057404|gb|ADB68345.1| DNA primase [Listeria monocytogenes 08-5578]
 gi|284060451|gb|ADB71390.1| DNA primase [Listeria monocytogenes 08-5923]
 gi|293590100|gb|EFF98434.1| DNA primase [Listeria monocytogenes J2818]
          Length = 626

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/649 (24%), Positives = 291/649 (44%), Gaps = 51/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +     I ++IG YV   ++  N     Y   CPFH EKTPSF  +  K  
Sbjct: 3   RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115
           ++CF C   G+  SFL    G +F+ESV+++A ++     + LP       + K+     
Sbjct: 58  FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPEERDTSNLPKETSETA 117

Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            ++ + ++    +H+ L           YL ERG+    +  F++G+AP+   ++   L 
Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMTTFQIGFAPNHHATITSFLE 177

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           ++G   +    AGLL + D+     DRFRNR++FPI + RGQ+IAF GR   + +  KYL
Sbjct: 178 KRGMDLQLAGAAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +F+K + L++F  A   ++K             I L+EG+MDV+S  +AGVQN 
Sbjct: 237 NSPETPVFNKRRILFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GT+LTE    L+ +L+ R ++C+DGD  G+ AAYKA  L++           + L 
Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344

Query: 355 RGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            G+DPD FIR  G   F++    + +           + R+     ++          I 
Sbjct: 345 AGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIHYLRKERNLQNETDQIGYIDDCLREIA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463
            +     R  Y + + D  +   +    +     +  +K+ +      P           
Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSRQMASYNEPPIDDSFMGMMP 464

Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                ++ S     +     ++ E  L+  ++          Q L D  + ++  + L++
Sbjct: 465 QEDTEMLFSFEQPTQKLSAHTISEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYEALYT 524

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
           +L   F E     P +    + +     L+  L+  +                 +  ++ 
Sbjct: 525 YLIGYFAEGNDADPTKFMDSVPDAAMKGLISSLEMVIS-----------PDEQGKPQFED 573

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +   KR++ L ++K+E+E+++A    + + E    ++  + +++ Q++
Sbjct: 574 YIRSLKRYK-LEQKKKELEQELATYNRENDNENEIRVMLEIVQLNRQLN 621


>gi|114799204|ref|YP_761567.1| DNA primase [Hyphomonas neptunium ATCC 15444]
 gi|114739378|gb|ABI77503.1| DNA primase [Hyphomonas neptunium ATCC 15444]
          Length = 627

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 186/631 (29%), Positives = 295/631 (46%), Gaps = 23/631 (3%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  F+ +L   I  S++IG+ V   ++       ++    PF  EKTPSF+ ND K  
Sbjct: 7   RIPDGFVDELKARIRPSDVIGRKVKLTKKGK-----EWVGLSPFTAEKTPSFYVNDQKRI 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CFS  + GD ++F+      SF+E+V++LA  AG+ LP   P   ++   +  L    
Sbjct: 62  FKCFSSGMGGDVINFVMETERLSFMEAVEKLAEEAGMALPKASPAAAEEYDHRKRLQAAC 121

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E A DFF   L+++       YL+ RG+ + +   ++LGYAPD     R HL+ +GF++ 
Sbjct: 122 EAAADFFEARLRSSEGAGARTYLEGRGLAASSWSKYRLGYAPDDWRRTRAHLQAEGFTDG 181

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           +++EAG++ + D     YD FR RL+FPI  SRG +IAFGGR L      KYLNS +T L
Sbjct: 182 ELLEAGIIKENDKGGEPYDAFRGRLMFPIPDSRGGIIAFGGRALQPDAKPKYLNSGDTPL 241

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHK   LY +  A   L               +I+ EGYMDV+++C+AG  N V+ LGTA
Sbjct: 242 FHKSTVLYRYKAAREALG--------HGEGGGLIVCEGYMDVIAMCEAGFGNAVAPLGTA 293

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE QL+LLW+  P  V+CFDGD  GL AAY+A+D  L    PG  V FVLL  G DPD 
Sbjct: 294 LTEEQLQLLWRAGPEPVMCFDGDKAGLGAAYRALDRALPFAEPGRSVFFVLLPDGMDPDD 353

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            IR  G  A  + +   LPL ++LW+RE +    +TP+ +A LE  L     HI+   ++
Sbjct: 354 LIRARGAGAMSEQLAARLPLSELLWRRERDAEPLDTPERQAGLEARLIAACGHIRHPGVK 413

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y + ++ RL+    +            +     R          + +    K   +  
Sbjct: 414 SAYERDLKSRLRDHLWQLREAKRAANYQKRPGRPGRPGSAQIPPGGEEAQELLKQGGREK 473

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           +    L+++ +++P +L    + LA       +   L   +     +        I   L
Sbjct: 474 IGGLRLIMSAVDNPGLLSIGAELLAQCAPAEPDAAFLRDAVLDLANDGIPIDRGTITAHL 533

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            + G       L        + +  +EA         ++ L   ++F    R+  + E  
Sbjct: 534 TKSGNIRAAGLLKDYPVTPQIATNGSEA---------REWLIALEQFVA-KRRSRDQETG 583

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
               +A  +   +        ++  +   ++
Sbjct: 584 SGTDSASADPTLSPQEWRRRLQMVAERRALK 614


>gi|269127407|ref|YP_003300777.1| DNA primase [Thermomonospora curvata DSM 43183]
 gi|268312365|gb|ACY98739.1| DNA primase [Thermomonospora curvata DSM 43183]
          Length = 629

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 165/646 (25%), Positives = 262/646 (40%), Gaps = 40/646 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +    PI++++G+Y+           GD    CPFHDEKTPSF+   S+G 
Sbjct: 4   RIRNEDIALVRERSPIADVVGEYLQLRSAG----GGDLKGLCPFHDEKTPSFNVTPSRGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIR 119
           Y+CF C   GD ++F+  +   +F+E+V+RLAA AGV L   +     + +   +  LI 
Sbjct: 60  YWCFGCGEGGDVITFVQKMEHLTFVEAVERLAARAGVELRYEEGGYAPRRQDGQRARLIE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             + A  F+   L          +L ERG D+   E F +GYAP    +L  HLR +GF+
Sbjct: 120 AHKAAAQFYAEQLAGEEAAIGRRFLAERGFDASHAEHFGVGYAPRGWETLVRHLRGRGFT 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           + ++I  GL  +        DRFR RL++PIR   G VI FG R L + +   KYLN+PE
Sbjct: 180 DRELIAGGLARE--GRRGPVDRFRGRLVWPIRDMTGDVIGFGARKLYEDDDGPKYLNTPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF K   LY    A   + +              ++VEGY DV++   AGV   V++ 
Sbjct: 238 TPLFKKSTVLYGADLAKKEMAR----------RRQAVIVEGYTDVMACHLAGVTTAVATC 287

Query: 299 GTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  E   +LL +           I+  FDGD  G RAA +A +        G +    
Sbjct: 288 GTAFGEEHAKLLRRLLMDQPDARAEIIFTFDGDAAGQRAALRAYEQDQRL---GAQTFVA 344

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP      +G  A   LI     L + + +   E     T + R          
Sbjct: 345 VQPDGLDPCDLRLKHGDAAVRDLIASRTQLFEFVIRATIERYDLTTNEGRLAALDAAAPV 404

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ----KYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
           +  IKD  LR  Y+ ++   L  + +    + I E +G  R             P +   
Sbjct: 405 VAGIKDAGLRKMYATSLDRWLGIMDERFVLRRIREQAGRARAGGAARTGVAGGRPERARP 464

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
            ++     L      RE  LL   +  PA++   + +L +  +       + + +     
Sbjct: 465 AAAEPGHDLGDPDVQREWELLKLAVQRPAVVGPAFDQLPESAFTAPPHAAVRAVIAQAGG 524

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                 P +   RL E    E +  L  ++    L  A       +    Y   L     
Sbjct: 525 VAAASGP-DWAVRLREAAPNERVAALITRLAVEPLRLA------GETDDRYANELLARIW 577

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            R L+ +   ++ ++ ++      +    L   L  +  Q   +  
Sbjct: 578 ERQLTGEIAALKAKLERLNPVEHPDDYNRLFGDLVALEQQRRVMRE 623


>gi|46907683|ref|YP_014072.1| DNA primase [Listeria monocytogenes serotype 4b str. F2365]
 gi|226224056|ref|YP_002758163.1| DNA primase [Listeria monocytogenes Clip81459]
 gi|254824486|ref|ZP_05229487.1| DNA primase [Listeria monocytogenes FSL J1-194]
 gi|46880952|gb|AAT04249.1| DNA primase [Listeria monocytogenes serotype 4b str. F2365]
 gi|225876518|emb|CAS05227.1| DNA primase [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|293593724|gb|EFG01485.1| DNA primase [Listeria monocytogenes FSL J1-194]
          Length = 626

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/649 (24%), Positives = 290/649 (44%), Gaps = 51/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +     I ++IG YV   ++  N     Y   CPFH EKTPSF  +  K  
Sbjct: 3   RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115
           ++CF C   G+  SFL    G +F+ESV+++A ++     + LP       + K+     
Sbjct: 58  FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPEERDTSNLPKETSETA 117

Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            ++ + ++    +H+ L           YL ERG+    +  F++G+AP+   ++   L 
Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMTTFQIGFAPNHHATITAFLE 177

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           ++G   +    AGLL + D+     DRFRNR++FPI + RGQ+IAF GR   + +  KYL
Sbjct: 178 KRGMDLQLAGRAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +F+K + L++F  A   ++K             I L+EG+MDV+S  +AGVQN 
Sbjct: 237 NSPETPVFNKRRILFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GT+LTE    L+ +L+ R ++C+DGD  G+ AAYKA  L++           + L 
Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344

Query: 355 RGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            G+DPD FIR  G   F++    + +             R+     ++          I 
Sbjct: 345 AGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIHYLRRERNLQNETDQIGYIDDCLREIA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463
            +     R  Y + + D  +   +    +     +  +K+ +      P           
Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSRQMASYNEPPIDDSFMGMMP 464

Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                ++ S     +     +  E  L+  ++          Q L D  + ++  + L++
Sbjct: 465 QEETEMLFSFEQPTQKLSAHTTSEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYKALYT 524

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
           +L   F E     P +    + +     L+  L+  +                 +  ++ 
Sbjct: 525 YLIGYFAEGNDADPTKFMDSVPDATMKGLISSLEMVIS-----------PDEQGKTQFED 573

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +   KRF+ L ++K+E+E+++A +  + + +    ++  + +++ Q++
Sbjct: 574 YIRSLKRFK-LEQKKKELEQELATLNRENDKDNEIRVMLEIVQLNRQLN 621


>gi|313633238|gb|EFS00107.1| DNA primase [Listeria seeligeri FSL N1-067]
          Length = 626

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 156/649 (24%), Positives = 290/649 (44%), Gaps = 51/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +     I ++IG YV   ++  N     Y   CPFH EKTPSF  +  K  
Sbjct: 3   RIPEEVIDHVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQT 115
           ++CF C   G+  SFL    G +F+E+V+++A ++ + + +  P+        K+     
Sbjct: 58  FHCFGCGKGGNVFSFLMEHDGLTFVEAVKKVADMSHLDVEIELPEERDTAHLPKETSETA 117

Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            ++ + ++    +H+ L           YL ERG+    +  F++G+AP+   ++   L 
Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGVAALTYLKERGMSEQMMATFQIGFAPNHHATITSFLE 177

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           ++G   +    AGLL + D+     DRFRNR++FPI + RGQ+IAF GR   + +  KYL
Sbjct: 178 KRGMDLQLAGTAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +F+K + L++F  A   ++K             I L+EG+MDV+S  +AGVQN 
Sbjct: 237 NSPETPIFNKRRTLFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GT+LTE    L+ +L+ R ++C+DGD  G+ AA+KA  L++           + L 
Sbjct: 287 VASMGTSLTEEHADLIKRLTSRAIICYDGDRAGIEAAFKAGTLLVERNRLDV--FVLQLP 344

Query: 355 RGEDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            G+DPD FIR  G   F+++   + +             R+     ++          I 
Sbjct: 345 AGKDPDDFIRASGADKFKEIYKQQRMTWTAFKIHYLRRERNLQNETDQIGYIDDCLREIA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463
            +     R  Y + + +  +   +    +     +  +K  +      P           
Sbjct: 405 KLDQAVERELYLKQLAEEFELTIETLKQQLQQSIKINQKARQTASYNEPPIDDSLMGLMP 464

Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                ++ S     +     +  E  L+  ++          Q L + ++ ++  Q L++
Sbjct: 465 QEDTEMLYSFEQPTQKLSAHTTAEQQLMKAMMESRDSFLLIKQLLGETQFYHDNYQALYT 524

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
           +L   F E     P +    + +     L+  L+  +                 R  ++ 
Sbjct: 525 YLIGYFAEGNEADPNKFMDSVGDAAMKGLISSLEMVIS-----------PEEQGRIQFED 573

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +   KRF+ L ++K+E+E+++A      + E    ++  + +++ Q++
Sbjct: 574 YIRSLKRFK-LEQKKKELEQELAGYNRDNDKENEIRVMLEIVQLNRQLN 621


>gi|254932640|ref|ZP_05265999.1| DNA primase [Listeria monocytogenes HPB2262]
 gi|664755|gb|AAC43305.1| DNA primase [Listeria monocytogenes]
 gi|293584199|gb|EFF96231.1| DNA primase [Listeria monocytogenes HPB2262]
 gi|332311896|gb|EGJ24991.1| DNA primase [Listeria monocytogenes str. Scott A]
 gi|1093601|prf||2104269B DNA primase
          Length = 626

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/649 (24%), Positives = 290/649 (44%), Gaps = 51/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +     I ++IG YV   ++  N     Y   CPFH EKTPSF  +  K  
Sbjct: 3   RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115
           ++CF C   G+  SFL    G +F+ESV+++A ++     + LP       + K+     
Sbjct: 58  FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPEERDTSNLPKETSETA 117

Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            ++ + ++    +H+ L           YL ERG+    +  F++G+AP+   ++   L 
Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMTTFQIGFAPNHHATITAFLE 177

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           ++G   +    AGLL + D+     DRFRNR++FPI + RGQ+IAF GR   + +  KYL
Sbjct: 178 KRGMDLQLAGRAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +F+K + L++F  A   ++K             I L+EG+MDV+S  +AGVQN 
Sbjct: 237 NSPETPVFNKRRILFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GT+LTE    L+ +L+ R ++C+DGD  G+ AAYKA  L++           + L 
Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344

Query: 355 RGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            G+DPD FIR  G   F++    + +             R+     ++          I 
Sbjct: 345 AGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIHYLRRERNLQNETDQISYIDDCLREIA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463
            +     R  Y + + D  +   +    +     +  +K+ +      P           
Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSRQMASYNEPPIDDSFMGMMP 464

Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                ++ S     +     +  E  L+  ++          Q L D  + ++  + L++
Sbjct: 465 QEETEMLFSFEQPTQKLSAHTTSEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYKALYT 524

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
           +L   F E     P +    + +     L+  L+  +                 +  ++ 
Sbjct: 525 YLIGYFAEGNDADPTKFMDSVPDATMKGLISSLEMVIS-----------PDEQGKTQFED 573

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +   KRF+ L ++K+E+E+++A +  + + +    ++  + +++ Q++
Sbjct: 574 YIRSLKRFK-LEQKKKELEQELATLNRENDKDNEIRVMLEIVQLNRQLN 621


>gi|16803495|ref|NP_464980.1| DNA primase [Listeria monocytogenes EGD-e]
 gi|224499694|ref|ZP_03668043.1| DNA primase [Listeria monocytogenes Finland 1988]
 gi|224501604|ref|ZP_03669911.1| DNA primase [Listeria monocytogenes FSL R2-561]
 gi|17433299|sp|P47762|PRIM_LISMO RecName: Full=DNA primase
 gi|16410884|emb|CAC99533.1| DNA primase [Listeria monocytogenes EGD-e]
          Length = 626

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/649 (24%), Positives = 291/649 (44%), Gaps = 51/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +     I ++IG YV   ++  N     Y   CPFH EKTPSF  +  K  
Sbjct: 3   RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115
           ++CF C   G+  SFL    G +F+ESV+++A ++     + LP       + K+     
Sbjct: 58  FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPEERDTSNLPKETSETA 117

Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            ++ + ++    +H+ L           YL ERG+    +  F++G+AP+   ++   L 
Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMTTFQIGFAPNHHATITSFLE 177

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           ++G   +    AGLL + D+     DRFRNR++FPI + RGQ+IAF GR   + +  KYL
Sbjct: 178 KRGMDLQLAGAAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +F+K + L++F  A   ++K             I L+EG+MDV+S  +AGVQN 
Sbjct: 237 NSPETPVFNKRRILFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GT+LTE    L+ +L+ R ++C+DGD  G+ AAYKA  L++           + L 
Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344

Query: 355 RGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            G+DPD FIR  G   F++    + +           + R+     E+          I 
Sbjct: 345 AGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIHYLRKERNLQNETEQIGYIDDCLREIA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463
            +     R  Y + + D  +   +    +     +  +K+ +      P           
Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSRQMASYNEPPIDDSFMGMMP 464

Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                ++ S     +     ++ E  L+  ++          Q L D  + ++  + L++
Sbjct: 465 QEGAEMLFSFEQPAQKLSAHTISEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYEALYT 524

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
           +L   F E     P +    + +     L+  L+  +                 +  ++ 
Sbjct: 525 YLIGYFAEGNDADPTKFMDSVPDAAMKGLISSLEMVIS-----------PDEQGKPQFED 573

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +   KR++ L ++K+E+E+++A    + + E    ++  + +++ Q++
Sbjct: 574 YIRSLKRYK-LEQKKKELEQELATYNRENDNENEIRVMLEIVQLNRQLN 621


>gi|258511945|ref|YP_003185379.1| DNA primase [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478671|gb|ACV58990.1| DNA primase [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 601

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 183/641 (28%), Positives = 294/641 (45%), Gaps = 50/641 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN P  FI  L   + I  +I +YV   +         Y   CPFH+E+TPSF  +  + 
Sbjct: 1   MNVPETFIDTLRQKVDIVEVISEYVPLRKSGR-----SYVGLCPFHNERTPSFSVSPERQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C   G    FL  + G SF E+V  LA   G+PLP        +        + 
Sbjct: 56  VYHCFGCGAGGTVFRFLMDIEGISFAETVTLLAERCGIPLPDSLHAPAPRSPRLERYRQA 115

Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            ++A   F+H L N     +  +YL  RGI    +  F+LGYAP S  ++   L+QKGFS
Sbjct: 116 HDLAAKAFNHILMNTDAGVQALHYLLSRGISRTTMATFQLGYAPPSGRAMMSFLQQKGFS 175

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            E++I  GL +D        DRFR R+I PI   RGQV+AFG R L      KYLNSPE 
Sbjct: 176 AEELIACGLAVD--LGGELVDRFRGRVIIPIADRRGQVVAFGARALDDDAKPKYLNSPEY 233

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LFHKG+ L+N   A   +++  R           +L+EGYMDVL++ QAG++  V++LG
Sbjct: 234 ELFHKGRMLFNVHRARKAIRRERRA----------LLLEGYMDVLAVAQAGIECAVATLG 283

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LTE Q +LL     ++V+ +DGD+ G +A  +AI++       G     + L  G DP
Sbjct: 284 TSLTEEQAQLLKADCDKVVIAYDGDEAGRKATVRAIEV---LEQAGVTPVVLRLPDGMDP 340

Query: 360 DSFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D +IR +G  AFE+++ ES    V  L +       + +P  R E    +   +      
Sbjct: 341 DEYIRAHGARAFERMLSESTWTAVQFLIEDMRARAEWVSPAGRTEFLRQVLRLLAERASP 400

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             + Y  + +        +    E  G+ +  ++ +  R++  P     +++  K ++S 
Sbjct: 401 VEQEYQLRNLSQEFNLSVETLKEEMRGFAKPLRRRSPPREEVTPWVNSPRAAKGKDQVSL 460

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +       +L   +      +   ++       +     L S ++S  +EQ    P    
Sbjct: 461 R-------ILQAALFSQEAAEYLMEK-GVTELAHPLHTALLSHVYSWRLEQPGQPPSAFI 512

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            RL +     L   L        L+    E  +  + + Y +AL L++    L ++ +E 
Sbjct: 513 DRLEDEELVRLASSL--------LFDEPPEITVE-LVEDYLRALELFR----LEQELKEK 559

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +   +  A G+ EK+        E+ +Q+  I+SQ A ++
Sbjct: 560 VRAWNEAEAAGDQEKS-------REIKLQVEWIQSQMATMK 593


>gi|217964399|ref|YP_002350077.1| DNA primase [Listeria monocytogenes HCC23]
 gi|217333669|gb|ACK39463.1| DNA primase [Listeria monocytogenes HCC23]
 gi|307571036|emb|CAR84215.1| DNA primase [Listeria monocytogenes L99]
          Length = 626

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/649 (24%), Positives = 291/649 (44%), Gaps = 51/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +     I ++IG YV   ++  N     Y   CPFH EKTPSF  +  K  
Sbjct: 3   RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115
           ++CF C   G+  SFL    G +F+ESV+++A ++     + LP       + K+     
Sbjct: 58  FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPEERDTSNLPKETSETA 117

Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            ++ + ++    +H+ L           YL ERG+    +  F++G+AP+   ++   L 
Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGAAALTYLKERGMSEQMMTTFQIGFAPNHHATITSFLE 177

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           ++G   +    AGLL + D+     DRFRNR++FPI + RGQ+IAF GR   + +  KYL
Sbjct: 178 KRGMDLQLAGMAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +F+K + L++F  A   ++K             I L+EG+MDV+S  +AGVQN 
Sbjct: 237 NSPETPVFNKRRTLFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GT+LTE    L+ +L+ R ++C+DGD  G+ AAYKA  L++           + L 
Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344

Query: 355 RGEDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            G+DPD FIR  G   F+++   + +           + R+     ++          I 
Sbjct: 345 AGKDPDDFIRASGAEKFKEIYKQQRMTWTAFKIHYLRKERNLQNETDQIGYIDDCLREIA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463
            +     R  Y + + D  +   +    +     +  +K+ +      P           
Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSRQMASYNEPPIDDSFMGMMP 464

Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                +  S     +     +  E  L+  ++          Q L D  + ++  + L++
Sbjct: 465 QEDTEMPFSFEQPTQKLSAHTTSEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYKALYT 524

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
           +L   F E     P +    + +     L+  L+  +                 +  ++ 
Sbjct: 525 YLIGYFAEGNDADPTKFMDSVPDATMKGLISSLEMVIS-----------PDEQGKPQFED 573

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +   KRF+ L ++K+E+E+++A  + + + E    ++  + +++ Q++
Sbjct: 574 YIRSLKRFK-LEQKKKELEQELAAFSRENDKENEIRVMLEIVQLNRQLN 621


>gi|290894217|ref|ZP_06557186.1| DNA primase [Listeria monocytogenes FSL J2-071]
 gi|290556214|gb|EFD89759.1| DNA primase [Listeria monocytogenes FSL J2-071]
          Length = 626

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/649 (24%), Positives = 291/649 (44%), Gaps = 51/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +     I ++IG YV   ++  N     Y   CPFH EKTPSF  +  K  
Sbjct: 3   RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115
           ++CF C   G+  SFL    G +F+ESV+++A ++     + LP       + K+     
Sbjct: 58  FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPEERDTSSLPKETSETA 117

Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            ++ + ++    +H+ L           YL ERG+    +  F++G+AP+   ++   L 
Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGAAALTYLKERGMSEQMMTTFQIGFAPNHHATITSFLE 177

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           ++G   +    AGLL + D+     DRFRNR++FPI + RGQ+IAF GR   + +  KYL
Sbjct: 178 KRGMDLQLAGMAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +F+K + L++F  A   ++K             I L+EG+MDV+S  +AGVQN 
Sbjct: 237 NSPETPVFNKRRTLFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GT+LTE    L+ +L+ R ++C+DGD  G+ AAYKA  L++           + L 
Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344

Query: 355 RGEDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            G+DPD FIR  G   F+++   + +           + R+     ++          I 
Sbjct: 345 AGKDPDDFIRASGAEKFKEIYKQQRMTWTAFKIHYLRKERNLQNETDQIGYIDDCLREIA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463
            +     R  Y + + D  +   +    +     +  +K+ +      P           
Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSIKNSQKSRQMASYNEPPIDDSFMGMMP 464

Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                +  S     +     +  E  L+  ++          Q L D  + ++  + L++
Sbjct: 465 QEDTEMPFSFEQPTQKLSAHTTSEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYKALYT 524

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
           +L   F E     P +    + +     L+  L+  +                 +  ++ 
Sbjct: 525 YLIGYFAEGNDADPTKFMDSVPDATMKGLISSLEMVIS-----------PDEQGKPQFED 573

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +   KRF+ L ++K+E+E+++A  + + + E    ++  + +++ Q++
Sbjct: 574 YIRSLKRFK-LEQKKKELEQELAAFSRENDKENEIRVMLEIVQLNRQLN 621


>gi|326334015|ref|ZP_08200244.1| DNA primase [Nocardioidaceae bacterium Broad-1]
 gi|325948164|gb|EGD40275.1| DNA primase [Nocardioidaceae bacterium Broad-1]
          Length = 628

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 143/647 (22%), Positives = 256/647 (39%), Gaps = 35/647 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+++     + +++ QYV   R       G Y   CPFHDEK+PSF+ N S+GF
Sbjct: 4   RIKETSIQEVREKARLDDIVSQYVTLRRAG----PGTYKGLCPFHDEKSPSFNVNPSRGF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIR 119
           Y CF C   GD + F+  L G SF E+V+RL    GV +   +      ++   +  L+ 
Sbjct: 60  YKCFGCGEGGDVIDFVMKLDGLSFFEAVERLGDKVGVQVQREEGDEAPVRRGPGRGKLVE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             +VA +F+   L          +L E+G D  A  +F +G++P     L  HLR +GFS
Sbjct: 120 AHKVAAEFYAEQLLTPDAVVARQFLAEKGFDRDAALLFGVGFSPRGGEDLYRHLRARGFS 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
           +E+++ AGL+       + YDRFR RL++PIR S G VI FG R L   + +  KYLN+ 
Sbjct: 180 DEEVVTAGLV---AQGRSHYDRFRGRLMWPIRESGGDVIGFGARRLFDDDRIEAKYLNTS 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++ K   LY    A   + +          +   ++VEGY DV++   AG+   V++
Sbjct: 237 ETPIYKKSHVLYGIDLARKEMAR----------TREAVIVEGYTDVMACHLAGITTAVAT 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG----NRVNFVLL 353
            GTA  +   ++L +                          L          ++    + 
Sbjct: 287 CGTAFGDDHAKVLRRFISDDQQLRGAVVFTFDGDAAGQAAALKAFKGDGNFTSQTYVAVE 346

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP+      G  A  +L+   +PL + + +        +  D R +        + 
Sbjct: 347 PDGLDPNDLRIKKGDEAVRELLANRVPLYEFVLRNVASKYDLDRADGRVDALREAAPLVA 406

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR----LMQS 469
            ++D+  +  +++ +   L     +   E           A    ++  S        ++
Sbjct: 407 SVRDESKKMGFTRDLARFLGVDPDEAAREVRRAAGRPAPQAAPPRREAVSASAESGPRRA 466

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +       +     E   L   + HP  L     E+    + +   + LW  +       
Sbjct: 467 APPMPHPREPRFTVERETLKLFVQHPVALGRTTSEITPEAFTHPLYRALWEIIAGLGGPG 526

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                    Q+L       L+ ++  ++    + SA  E +   V Q   + L L  +  
Sbjct: 527 AGTGDAGWAQKLSAAASDPLVNRILAELAVEPIPSAK-EPDAAYVLQYVVRLLELLDQ-- 583

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              R+  +++ ++ +  A  + E    L + L  +      + +  A
Sbjct: 584 ---RRIADVKSRLQRSDAAADPEAYNRLFAQLAALEQHRRGLRNLVA 627


>gi|269960188|ref|ZP_06174563.1| DNA primase [Vibrio harveyi 1DA3]
 gi|269834995|gb|EEZ89079.1| DNA primase [Vibrio harveyi 1DA3]
          Length = 586

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 174/635 (27%), Positives = 290/635 (45%), Gaps = 64/635 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---------EKKEKI 113
           +CF C   G+ + F+       F+E+++ LA+  G+ +P               +     
Sbjct: 60  HCFGCGAHGNAIDFIMEFERLEFVEAIEELASYLGLDVPREQRSGGGGQFKSGPQASSSE 119

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+ + LK    K    YL +RG+    ++ F +GY  D    +R++ 
Sbjct: 120 KRSLYDLMGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q   +++ ++  G+LI+ D     YDRFR R++FPIR  RG+VI FGGR L    + KY
Sbjct: 180 GQNKDNQDMLVTGGMLIENDKGNR-YDRFRGRIMFPIRDRRGRVIGFGGRVL-GDGTPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++  R          I++VEGYMDV++L Q GV  
Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPPR----------ILVVEGYMDVVALAQYGVDY 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   +++L++ +  +V C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 288 SVASLGTSTTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFL 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK AFE+ I ++ PL   L+    E    N    + ++ L  +    
Sbjct: 348 PDGEDPDSYVRKYGKQAFEQQIEQATPLSSYLFDNLIELHQINLGNNEGKSALRAYASAL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D      Y Q + ++L       + E +G+    ++  +   +  P         
Sbjct: 408 IDKIPDP-----YFQELLEKL-------LDERTGFDNRLRQPRKKTSETRPQPHKEIKRT 455

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  LI +P+  Q      +        L  L+  +        +
Sbjct: 456 PM-----------REVIALLIQNPSYAQMVPDLSSVRDLSIPGL-SLFVDVLDKCQAHPH 503

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +         LL +L        +     E  +  + +   Q +         
Sbjct: 504 INTGQLLEHWRNSQNETLLSRLASWDIP-LVEDNLEEIFLDSLDKIIAQCV--------- 553

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            +Q E ++ +   V     AE+   L++++ ++  
Sbjct: 554 EKQIENLQAKARSVGLS--AEEKRELLALMLDLKA 586


>gi|302528808|ref|ZP_07281150.1| DNA primase [Streptomyces sp. AA4]
 gi|302437703|gb|EFL09519.1| DNA primase [Streptomyces sp. AA4]
          Length = 637

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 142/655 (21%), Positives = 253/655 (38%), Gaps = 45/655 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I ++     I  ++G+YV   R       G     CPFHDEKTPSF+   + G 
Sbjct: 4   RIRESDIAEVRERNRIDEVVGEYVALRRAG----GGSLKGLCPFHDEKTPSFNVRPTHGT 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD + F+  +   SF+E+V+RLA   G+ L         +     ++ LI 
Sbjct: 60  FHCFGCGEGGDVIKFIQKIDLVSFVEAVERLADRVGIRLTYEGGGASVQRDRGTRSRLIE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A +F+   L     +    +L ERG D+ A + F  G+AP     L +HL  +GF 
Sbjct: 120 AHRAAAEFYVEQLGTDEARAARDFLTERGFDAAAAKQFGCGFAPGGWDKLTKHLLNRGFE 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            +++I +GL  +G       DRF  RL++PIR     V+ FG R L   + +  KYLN+ 
Sbjct: 180 VKELIASGLSKEGQR--GPIDRFHRRLVWPIRDVGNDVVGFGARRLFDDDRISAKYLNTS 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++ K   ++    A   + K             +++VEGY DV+++  AGV   V+S
Sbjct: 238 ETPIYKKSHVMFGLDQAKREIAK----------RHQVVVVEGYTDVMAMHAAGVPTAVAS 287

Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA  E  +++L +L          ++  FDGD+ G +AA KA +          +   
Sbjct: 288 SGTAFGEDHMKVLRRLMMDDDAFRGEVIFTFDGDEAGQKAALKAFEGDQTFAG---QTYI 344

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G  A   L+    PL + + K   +    ++ D +         
Sbjct: 345 AVAPDGMDPCELRIAKGDAAVRDLVARRTPLFEFVIKSMLKQFDLDSVDGQVAALQKTVP 404

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW---------KKNARHRDQKG 461
            +  IKD+  R  Y+  +   +       +                   +       Q+ 
Sbjct: 405 MVAAIKDRASRDGYASKLAWWVGWQDVAQVVNRVRGAAGAAARRGPVEVQPRRSAARQEA 464

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
           P+    +  L +   +    + +   L   +  PAI   +Y  L +  + +     +   
Sbjct: 465 PAPEPEKQDLPRPAPNDPRFVGQREALKAALQQPAIAGPEYDSLPEEAFTHPVYVAVHLA 524

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +              +            ++++  ++    L        + +V   Y   
Sbjct: 525 VLKAGGAASGLTGPALLDAASAHCPEGTVRRVLSELAVEPLR------ALGEVDSRYISG 578

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           +    +  L+ RQ  EI+ ++ +++     +    L   L  +      +  Q A
Sbjct: 579 VLAGVQENLVGRQIGEIKSKLQRLSPVEAPDDYRALFGDLVALEQYRKSLREQAA 633


>gi|119962293|ref|YP_947261.1| DNA primase [Arthrobacter aurescens TC1]
 gi|119949152|gb|ABM08063.1| DNA primase [Arthrobacter aurescens TC1]
          Length = 627

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 152/645 (23%), Positives = 255/645 (39%), Gaps = 38/645 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ I ++     I  ++  YV           G +   CPFHDE++PSF      G Y
Sbjct: 5   IKREDIDEVRQRTDIKEVVDGYVTLKGAG----LGSFKGLCPFHDERSPSFTVRPQVGRY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLIR 119
           +CF C   GD +SF+  +   SF E+V++LAA  G  L   D       ++   +  L+ 
Sbjct: 61  HCFGCGEDGDAISFVQKMDHSSFHEAVEKLAARIGYELRYEDGGTGPSREEVGKRQRLLD 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             ++A +FF   L          +LD RG D  A E F +GYAP     L +HLR +GF+
Sbjct: 121 AHKIADEFFRAQLLTPGAAEGRNFLDGRGFDRSAAEHFGVGYAPQGWDGLLKHLRGRGFT 180

Query: 180 EEKIIEAGLLID--GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNS 236
           + ++   G+       N    YDRFR RLI+PIR   G  I FG R L + +   KYLN+
Sbjct: 181 DAELKLTGMFSAGGPGNQQRIYDRFRGRLIWPIRDIAGDTIGFGARKLFEDDQGPKYLNT 240

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET L+ K + LY    A   + K             +++VEGY DV++   AGV   V+
Sbjct: 241 PETTLYKKSQVLYGIDLAKRNIAK----------ERQLVVVEGYTDVMACHLAGVATAVA 290

Query: 297 SLGTALTEYQLRLLWK------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           + GTA     +++  +          ++  FDGD  G +AA +A +          +   
Sbjct: 291 TCGTAFGTEHIKVARRLLSDDGSGGEVIFTFDGDAAGQKAALRAFEEDQRFQA---QTYV 347

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP    +  G +A   LI    PL +   K      + +T + R         
Sbjct: 348 AVEPSGADPCDLRQLKGDSAVRDLISSRKPLFEFAIKASLRRHNLDTVEGRVAALREAAP 407

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  I+D   R  Y++ +   L    ++      G  +              +     S 
Sbjct: 408 VVAQIRDSAARPGYTRELAGWLGMPIEEVSRFVGGAAKRAAAGGSGEQSTTATAPPSSSP 467

Query: 471 -LVKGKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVE 528
              +       +  E   L   +  PA+L    ++      +       + + +      
Sbjct: 468 VFHRPDPRDPVAGMERQALEVALQDPAVLGGVSWERFEASHFATPAYSAVHAAI-RATGL 526

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                P    +++  +   E L+ L  ++    L ++T EA     R    +   L    
Sbjct: 527 AHAADPVAWVEQIR-QEVPEPLRSLVSELAVTPLPASTPEAMQRYCRDILARLFEL---- 581

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             ++R K +   Q+ ++ A    E+   L   L ++ ++   + S
Sbjct: 582 -QITRIKADKMGQLQRLDAGANPEEFQRLNRELMQLEMERRALRS 625


>gi|153813736|ref|ZP_01966404.1| hypothetical protein RUMOBE_04169 [Ruminococcus obeum ATCC 29174]
 gi|149830176|gb|EDM85269.1| hypothetical protein RUMOBE_04169 [Ruminococcus obeum ATCC 29174]
          Length = 599

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/611 (26%), Positives = 266/611 (43%), Gaps = 33/611 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  D I+++     I +++ QYV   R+ +      Y+  CPFH+EKTPSF     K 
Sbjct: 3   MRYSDDIIEEVRQKNDIVDVVSQYVKLTRKGS-----SYFGLCPFHNEKTPSFSVTPGKQ 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+  +F+      SF E+++ LA  AGV LP      ++ +K + + +L+
Sbjct: 58  MYYCFGCGAGGNVFNFIMEYENYSFGEALKHLADRAGVELPKIEYSREVREKAEQKAELL 117

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + + A  ++++ L+    ++ H YL  R +    +  F LGY+      L ++L+ KG+
Sbjct: 118 EINKQAAQYYYYQLRTEGGRQGHEYLAGRQLSEETMRKFGLGYSDKFGSGLYKYLKSKGY 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S+E++ E+GL          YD+F NR+IFPI     +VI FGGR +      KYLNSPE
Sbjct: 178 SDERLRESGLFNVD-ERHGMYDKFWNRVIFPIMDVNNRVIGFGGRVM-GDGKPKYLNSPE 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K +NLY    A    +K            ++IL EGYMDV+S+ QAG  N V+SL
Sbjct: 236 TKIFDKSRNLYGLNIARTTRKK------------YLILCEGYMDVISMHQAGFTNAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     LL + +  ++L +D D+ G+RAA + I +       G     V L   +D
Sbjct: 284 GTALTSGHASLLKRYTQEVLLLYDSDEAGIRAALRGIPI---LREAGVNSRVVDLKPYKD 340

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AFE+ + ++                   P  +          +  +KD+
Sbjct: 341 PDEFIKNMGAEAFEERLNQASDSFMFRVSIAESEFPMEEPQGQNRFFERCAEMLLELKDE 400

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +AI  + +  +     +               + +    +    S  K K   
Sbjct: 401 LERNLYIEAIVKKYRGQYGVSTEDLRKRVNTLALKGTPAENR---IQPKSGSQNKKKKET 457

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  +L  L+ +P +  +  Q L    +     +++   LF    E +   P ++ 
Sbjct: 458 ASEQAQKLMLTWLVTYPNVFDKVAQYLTPEDFVVPLYREVAQMLFQQREEGQ-VNPAKLL 516

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-----RLLSR 593
               +      +  L              +A    + +   ++LA   R          +
Sbjct: 517 NSFTDSEEQREVASLFNATIHLENQQEQDQAFADTLLRIKSESLAERNRNWDPTDMAGLQ 576

Query: 594 QKEEIEKQIAQ 604
           Q  + +K+I +
Sbjct: 577 QIVKAKKRIGR 587


>gi|148272767|ref|YP_001222328.1| DNA primase [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|147830697|emb|CAN01637.1| DNA primase [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 629

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 153/653 (23%), Positives = 260/653 (39%), Gaps = 49/653 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I ++   + + +++G+YV           G     CPFHDE+TPSFH     GFY
Sbjct: 4   IRKSDIDEVRSRVNLGDVVGEYVTLKSAG----VGSLKGLCPFHDERTPSFHVRPQVGFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD  +FL  +   +F E+V+R+A   G  L   D +    +  ++ L+   E
Sbjct: 60  HCFGCGEGGDVYTFLQRMDHVTFAEAVERMAQRIGYQLHYEDGQAATDQGNRSRLLGANE 119

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A +FF   L +   +    +L ERG D  A + F +G+AP S  +L  HL  KG++E +
Sbjct: 120 AAAEFFVEQLGSEAAEIGRTFLGERGFDQGAAQRFGVGFAPQSWDALSSHLTAKGYTEAE 179

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241
           ++ AGLL        +YDRFR RL++PIR   G  + FG R L + +   KYLN+PET +
Sbjct: 180 LVTAGLLSQ--GDRGAYDRFRGRLVWPIRDLTGATVGFGARRLREDDKGPKYLNTPETPV 237

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           +HK   LY    A   + +             +++VEGY DV++   AGV   V++ GT+
Sbjct: 238 YHKSSVLYGLDLAKRDVSR----------GRQVVVVEGYTDVMACHLAGVTTAVATCGTS 287

Query: 302 LTEYQLRLLWKL------SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
                +++L ++         +V  FD D  G +AA +A            +    +   
Sbjct: 288 FGVDHIKVLRRVLGDDSGLGEVVFTFDPDAAGQKAAMRAFSEERRFAA---QTYVAVGPE 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G DP       G  A  ++I    P+ +   K+   +   +T + R          +  I
Sbjct: 345 GLDPCDLRLTRGDDAVRRMIQGKKPMFEFAIKQILADHDLDTVEGRVAALRAAAPVVADI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +D  LR  Y++ +   L     +        GR    +   R    P  R  Q       
Sbjct: 405 RDPSLRPGYARELAGWLGMDLTEVGRAVQTAGRSMPADGADRSGGSPQGRHAQGGHGPED 464

Query: 476 --------------LSKKPSLREAALLLTLINHPAIL-QEQYQELADIRYDNNELQKLWS 520
                          +   +  E   L+ ++ HP ++  +     A + + N  L  +  
Sbjct: 465 EGGDASRSMSLMDLPTDLATRLERDALMAMLQHPELVGNDLVMRAAQVTFVNESLAVVRD 524

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +                       F  L+KQL          +        D    Y +
Sbjct: 525 GVIGSMDALGGADWLSRVALEVPESFATLVKQLG--------VAPLPNRGDADKLAVYVK 576

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +      R L R+K ++  ++ +  A  + E+   +   L +V  +   +  
Sbjct: 577 GVTAELVGRDLLRRKADLIGRLQRTDATHDRERYQEIQRELMQVEAERRALRE 629


>gi|225174151|ref|ZP_03728150.1| DNA primase [Dethiobacter alkaliphilus AHT 1]
 gi|225169936|gb|EEG78731.1| DNA primase [Dethiobacter alkaliphilus AHT 1]
          Length = 604

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 184/628 (29%), Positives = 292/628 (46%), Gaps = 46/628 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           N P +F+ ++     +  LI +YV   R   N     Y+  CPFH EKTPSF  +  K  
Sbjct: 4   NIPNEFVDEVRTRFDVVELISEYVQLKRSGRN-----YFGLCPFHGEKTPSFSVSQDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           ++CF C   G+  SFL  + G  F E+V+ LA  AG+ LP        ++ E+ ++ L  
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGIPFPEAVKELARRAGMQLPSTVSSVAAQRAEQKKSRLRE 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            +  A  ++ + L++    +  +YL++RG+    IE F LG+AP+   ++++ LR+K F+
Sbjct: 119 AMAWADKYYRYWLQHQDGAKALHYLEKRGLTREIIESFGLGFAPNRWEAVKQFLRKKDFT 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           E ++++AGLL D  N   +YDRFRNR+ FPI S RG+ IAFGGR L      KYLNSPET
Sbjct: 179 ERELLDAGLLSD--NPKKTYDRFRNRITFPICSPRGETIAFGGRIL-DDGEPKYLNSPET 235

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LF KGKNLY    A   +++              I+ EGYMDV++  QAGV N V+SLG
Sbjct: 236 PLFDKGKNLYAIHLAREAIRR----------EKQAIIFEGYMDVIAAHQAGVTNAVASLG 285

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LTE Q RLL   +  +V+ +D D  G  A ++ + +       G  V    L  G DP
Sbjct: 286 TSLTEAQARLLRSQAEEVVIVYDADAAGQAATWRGLQI---LKSAGCLVKVGRLPAGMDP 342

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D +IR +G  AF K +I E+L LVD       +  S +  ++R  L   +   +  + + 
Sbjct: 343 DDYIRRHGGDAFRKDIIGEALLLVDYQMASLAQQYSLDKDEDRIRLFNKISEILASVDNA 402

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y       L+        E +   +  +  +R   Q   S  +  S   +    K
Sbjct: 403 MEREDYVTKAAAMLKLPATAVREELN---KKKQSASRPHSQTRKSSTIKPSLQRETAAQK 459

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            P      ++      P++++E   +L +  +      +L         E+  F    + 
Sbjct: 460 APM----QIIALWGRFPSLIEESAGQLEEEDFP----AELIPAFLEAQKEKASFSAARLL 511

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L E    + L +L              E +    ++     + L K  R ++RQ++E+
Sbjct: 512 DSLQEEKHRQTLSRLL----------IHEEYDEKIAKKAIDDCIRLLKCVR-IARQRKEL 560

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHI 626
           E Q+A +       +   L     E+  
Sbjct: 561 EAQMASLDPVAAKGEINELSKKWLELRK 588


>gi|121534200|ref|ZP_01666025.1| DNA primase [Thermosinus carboxydivorans Nor1]
 gi|121307303|gb|EAX48220.1| DNA primase [Thermosinus carboxydivorans Nor1]
          Length = 606

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 175/631 (27%), Positives = 293/631 (46%), Gaps = 38/631 (6%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            DF+  +     I ++I  YV   ++  N     YW CCPFH EKTPSF     KGF+YC
Sbjct: 7   DDFVDRVRSECDIVSVISDYVPLKKKGRN-----YWGCCPFHHEKTPSFSVTPEKGFFYC 61

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--DLIRLIE 122
           F C   G+  +FL  +   SF E+V++LAA   +PLP  +    +  + +    L    E
Sbjct: 62  FGCQTGGNVFNFLMKIENISFFEAVKKLAARLNIPLPEREKSPAEIARERELASLYLANE 121

Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A++FFH  L K    +    YL  RGI    I  FKLG+AP +   L + L ++G SEE
Sbjct: 122 YASEFFHACLTKTNMGRVAREYLASRGISDDIIRNFKLGFAPPAWDKLVQALTRRGLSEE 181

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +++AGL++        YDRFRNR++FPIR +RG+V+ FGGR L    S KYLNSP+T+L
Sbjct: 182 LLLKAGLVLTRPRGDGIYDRFRNRVMFPIRDARGRVVGFGGRVL-DDSSPKYLNSPDTLL 240

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+K   LY    A+  ++           S  +I+VEGYMDV++  + G  NVV+SLGTA
Sbjct: 241 FNKRHLLYGLDAAIRSIK----------ESGQVIVVEGYMDVITAHRFGFTNVVASLGTA 290

Query: 302 LTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
            T  Q  LL +    +++  +D D  G  A ++A+  V      G  V  V +  G+DPD
Sbjct: 291 FTPEQAGLLERCSVSQVLFAYDSDAAGQSATFRALATVR---ERGFNVKVVSIPEGKDPD 347

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            F+R +G  AF +++ +++P VD   ++  E+  ++T + +  +   +   +  + +   
Sbjct: 348 EFLRRHGPEAFARVVAQAMPFVDYQLQQALESIDYSTLEGKVAVVSKILPVLASVGNAVE 407

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              +   +  +L        TE++ Y   +KK+         +         KG      
Sbjct: 408 VNGHIARLAQKLNIDESAIRTEYAKYIHQYKKDKIVNKGNNINSHHNFVKFAKG-PEAAT 466

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  L+  + +  A++     +LA   + ++  Q++   +F      +   P  +   
Sbjct: 467 VAAERQLIRLMCDDGAVIPYVQVQLAVEDFSDSARQEIVRRIFMVNDAGEKLEPAALAMG 526

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L E    EL          + +     +    DV +     L    R   L    E+   
Sbjct: 527 LSETANAEL----------SHIMLIDEQCA--DVTKVVDDCLK-TIRLARLKALYEQHRL 573

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +  ++   G++ +    ++    ++ +I ++
Sbjct: 574 KADELERMGDS-RFQEELAESKRINDEIKKL 603


>gi|38234270|ref|NP_940037.1| DNA primase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200533|emb|CAE50228.1| DNA primase [Corynebacterium diphtheriae]
          Length = 632

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/646 (20%), Positives = 248/646 (38%), Gaps = 41/646 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +    PI  ++G+YV                  PF +EKTPSFH   + G+
Sbjct: 6   RIPDSDIQAIRERTPIEEIVGEYVQLKPAGA----DSLKGLSPFKEEKTPSFHVRPNHGY 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118
           ++CFS    GD  SFL  +   +F E+V+  A   G  +         + +    +  LI
Sbjct: 62  FHCFSTGKGGDVFSFLMEMEQLTFPEAVEVCAEKIGYQINYQGGTTGARREEPGTRKRLI 121

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
               VA  F+   L+         +L +RG     I  F+ GYAP+   ++ + + +KGF
Sbjct: 122 EANRVAHQFYRQQLETPEAAVARQFLLDRGFSQQHIYGFECGYAPEGWDTMTKFMLRKGF 181

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
             +++  AGL           DRF  RL++PI+S  G VI FG R L   +   KY+N+P
Sbjct: 182 EFKELEAAGL--STMGRRGPIDRFHRRLLWPIKSVSGDVIGFGARKLFDDDKLGKYMNTP 239

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K K L+    A   +           S    ++VEGY DV+++  AG+   V++
Sbjct: 240 ETLLYKKSKVLFGLDLAKKSIA----------SQHQAVVVEGYTDVMAMHAAGITTAVAA 289

Query: 298 LGTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA  E  L++L +           ++  FDGD+ G +AA +A +          +   
Sbjct: 290 CGTAFGEEHLQILRRYMLDDAYFAGSLIYTFDGDEAGQKAAMRAFEGDQKFSG---QSYV 346

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G  A   L+ + +P+ + + +        ++ + R +       
Sbjct: 347 AVAPDGMDPCDLRLAKGDAAVRDLVAQRVPMFEFIIRTLISEYPLDSVEGRLQALRRAVP 406

Query: 411 CINHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
            +  I+D+ L+  Y++ +   +      ++ Q+   E        ++    R        
Sbjct: 407 IVASIRDRALKTEYARLLAGWVGWPDPNEVLQQVRAEERRPKTQPRQRRATRIDSNSQPA 466

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           ++QS LV     +     +   L   + +P    E +  L D  + +     +   + + 
Sbjct: 467 MIQSMLVMPDRKEPRLWPQREALKIALQYPEHAGEYFDSLPDDAFTHESYAAVRKAIVAA 526

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
                          + +  +  + K L  ++    +                       
Sbjct: 527 GGCSDAIRGSTWLDAVRDNVYDMVGKSLVSELAVEHIILDEWGLAAH------TDTTLAR 580

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
              + +  Q  +++  + ++    + +    L + L  +     ++
Sbjct: 581 LMEQRIGNQIAQLKGAMQRMRPSEDMQAYNSLFADLVALEQTRREL 626


>gi|289434737|ref|YP_003464609.1| DNA primase [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170981|emb|CBH27523.1| DNA primase [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 626

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 156/649 (24%), Positives = 290/649 (44%), Gaps = 51/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +     I ++IG YV   ++  N     Y   CPFH EKTPSF  +  K  
Sbjct: 3   RIPEEVIDHVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQT 115
           ++CF C   G+  SFL    G +F+E+V+++A ++ + + +  P+        K+     
Sbjct: 58  FHCFGCGKGGNVFSFLMEHDGLTFVEAVKKVADMSHLDVEIELPEERDTAHLPKETSETA 117

Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            ++ + ++    +H+ L           YL ERG+    +  F++G+AP+   ++   L 
Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGVAALTYLKERGMSEQMMATFQIGFAPNHHATITSFLE 177

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           ++G   +    AGLL + D+     DRFRNR++FPI + RGQ+IAF GR   + +  KYL
Sbjct: 178 KRGMDLQLAGTAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +F+K + L++F  A   ++K             I L+EG+MDV+S  +AGVQN 
Sbjct: 237 NSPETPIFNKRRTLFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GT+LTE    L+ +L+ R ++C+DGD  G+ AA+KA  L++           + L 
Sbjct: 287 VASMGTSLTEEHADLIKRLTSRAIICYDGDRAGIEAAFKAGTLLVERNRLDV--FVLQLP 344

Query: 355 RGEDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            G+DPD FIR  G   F+++   + +             R+     ++          I 
Sbjct: 345 AGKDPDDFIRASGADKFKEIYKQQRMTWTAFKIHYLRRERNLQNETDQIGYIDDCLREIA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463
            +     R  Y + + +  +   +    +     +  +K  +      P           
Sbjct: 405 KLDQAVERELYLKQLAEEFELTIETLKQQLQQSIKINQKARQTASYNEPPIDDSLMGLMP 464

Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                ++ S     +     +  E  L+  ++          Q L + ++ ++  Q L++
Sbjct: 465 QEDTEMLYSFEQPTQKLSAHTTAEQQLMKAMMESRDSFLLIKQLLGETQFYHDNYQALYT 524

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
           +L   F E     P +    + +     L+  L+  +                 R  ++ 
Sbjct: 525 YLIGYFAEGNEADPNKFMDSVGDVAMKGLISSLEMVIS-----------PEEQGRIQFED 573

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +   KRF+ L ++K+E+E+++A      + E    ++  + +++ Q++
Sbjct: 574 YIRSLKRFK-LEQKKKELEQELAGYNRDNDKENEIRVMLEIVQLNRQLN 621


>gi|226946706|ref|YP_002801779.1| DNA primase [Azotobacter vinelandii DJ]
 gi|226721633|gb|ACO80804.1| DNA primase [Azotobacter vinelandii DJ]
          Length = 638

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 200/657 (30%), Positives = 301/657 (45%), Gaps = 67/657 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I  +IG  V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQGFIDDLLNRTDIVEVIGSRVQLKKTGRN-----YSACCPFHQEKTPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIRL 120
           YCF C   G+ L FL       F ++V+ LA  AG+ +P  +     + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFLMDHDHLEFPQAVEELARRAGLEVPREERGGPHQPRQSADSPLYPL 119

Query: 121 IEVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A D++  +LK+   +++   YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LATAADYYRQALKSHPARQVAVDYLKGRGLSGVIARDFALGFAPPGWDNLLKHLGGDALQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +IEAGLLI+   +   YDRFR+R+IFPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKAMIEAGLLIENAETGRRYDRFRDRVIFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +              II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARRHNRDL----------DEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L++L P ++ CFDGD  G +AA++A++  L  L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRLVPSVLFCFDGDQAGRKAAWRALEATLPSLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           DS +R  G+ AF   L  ++ PL D  +++ TE     T + +A L       I  I   
Sbjct: 349 DSLVRAEGREAFLARLEQQARPLADYFFRQLTEEADPGTLEGKAHLATLAAPLIEKIPGA 408

Query: 419 KLRYYYSQAIRD------------------RLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
            LR    Q + +                  R++                 +++A  R  +
Sbjct: 409 NLRALMRQRLAEITGLTGTSPNSPAASPVPRVEDAHYYQADPGYADLIEPERSAFGRTAQ 468

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREA--------ALLLTLINHPAILQEQYQELADIRYDN 512
              Q   +S   KG+    P  R A        + L TL+ HP + Q+         + +
Sbjct: 469 DKGQWKGRSGYRKGRDDFAPRPRTAVSVEPPNLSALRTLLQHPQLAQKVADA---SHFAS 525

Query: 513 NE--LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            E    +L   L     +       ++  R      G LL+ L  +      W  +T+  
Sbjct: 526 EEDPYAQLLVALLEALQKNPRSSSLQLIARWHGTEQGRLLRALAEKE-----WLISTDNL 580

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                      LA  +R R + +   +  +           E +A     L ++  +
Sbjct: 581 EQQFFDTIN-TLAARQRERGIEQLLRKARQ----------GELSAEEKIRLRDLLSR 626


>gi|170781949|ref|YP_001710281.1| DNA primase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156517|emb|CAQ01668.1| DNA primase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 630

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 153/654 (23%), Positives = 261/654 (39%), Gaps = 50/654 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + + +++G+YV           G     CPFHDE+TPSFH     GFY
Sbjct: 4   IRKNDIDEVRSRVNLGDVVGEYVTLKSAG----VGSLKGLCPFHDERTPSFHVRPQVGFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD  +FL  +   +F E+V+R+A   G  L   D +    +  ++ L+   E
Sbjct: 60  HCFGCGEGGDVYTFLQHMDHVTFAEAVERMAQRIGYQLHYEDGQAATDQGNRSRLLGANE 119

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A +FF   L +   +    +L ERG D  A + F +G+AP S  +L  HL+ KG++E +
Sbjct: 120 AAAEFFVEQLGSEEAEIGRTFLGERGFDQGAAQRFGVGFAPQSWDALSSHLKAKGYAEAE 179

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241
           ++ AGLL        +YDRFR RL++PIR   G  + FG R L + +   KYLN+PET +
Sbjct: 180 LVTAGLLSQ--GDRGAYDRFRGRLVWPIRDLTGATVGFGARRLREDDKGPKYLNTPETPV 237

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           +HK   LY    A   + +             +++VEGY DV++   AG+   V++ GT+
Sbjct: 238 YHKSSVLYGLDLAKRDVSR----------GRQVVVVEGYTDVMACHLAGITTAVATCGTS 287

Query: 302 LTEYQLRLLWKL------SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
                +++L ++         +V  FD D  G +AA +A            +    +   
Sbjct: 288 FGVDHIKVLRRVLGDDSGLGEVVFTFDPDAAGQKAAMRAFSEERRFAA---QTYVAVGPE 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G DP       G  A  ++I    P+ +   K+   +    T + R          +  I
Sbjct: 345 GLDPCDLRLTRGDDAVRRMIQGKKPMFEFAIKQILADHDLETVEGRVAALRAAAPVVADI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +D  LR  Y++ +   L     +        GR    +   R    P  R  Q       
Sbjct: 405 RDPSLRPGYARELAGWLGMDLTEVGRAVQTAGRSMPADGADRSGGAPQGRHAQGGHGPDD 464

Query: 476 ---------------LSKKPSLREAALLLTLINHPAIL-QEQYQELADIRYDNNELQKLW 519
                           +   +  E   L+ ++ HP ++  +     A + + N  L  + 
Sbjct: 465 DGAGDASRSMSLMDLPTDLATRLERDALMAMLQHPELVGNDLVMRAAQVTFVNESLAVVR 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             +                       F  L+KQL          +        D    Y 
Sbjct: 525 DGVIGSMDALGGADWLSRVALEVPESFATLVKQLG--------VAPLPNRGDADKLAVYV 576

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           + +      R L R+K ++  ++ +  A  E E+   +   L +V  +   +  
Sbjct: 577 KGVTAELVGRDLLRRKADLIGRLQRTDATHERERYQEIQRELMQVEAERRALRE 630


>gi|94498544|ref|ZP_01305099.1| DNA primase [Sphingomonas sp. SKA58]
 gi|94421987|gb|EAT07033.1| DNA primase [Sphingomonas sp. SKA58]
          Length = 625

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 201/651 (30%), Positives = 306/651 (47%), Gaps = 39/651 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M     ++ +L     +S LIG+ +   +        +Y ACCPFH+EKTPSF  ND KG
Sbjct: 1   MTLTPQWLDELRARTSLSTLIGKSIKVQKAGR-----EYKACCPFHNEKTPSFTINDEKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF C   GD + +++   G  F+E+V+ LAA AG+ +P  DP+  K+ +    L   
Sbjct: 56  FYHCFGCGAHGDAIRWMTDQRGLPFMEAVKELAATAGMEVPAADPRAAKRAEQAKGLHEA 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A  FF   L          YL  RGI       F  GYAPD+R  L+  LR  G   
Sbjct: 116 MAAAQSFFEDQLGGLDGGEARAYLGRRGISDATRRAFGFGYAPDARGRLKTALRDFGEPM 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             ++EAGLLID +    SYDRFR RL+ PIR  RG+VIAFGGR L      KYLNSP+T 
Sbjct: 176 --LVEAGLLIDPEGERDSYDRFRGRLMLPIRDIRGRVIAFGGRIL-GDGEPKYLNSPDTP 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+ LYN   A    +++ R          +I+VEGYMDV++L QAG  + V+ LGT
Sbjct: 233 LFDKGRTLYNIDKASPVSRQTGR----------VIVVEGYMDVIALAQAGFADAVAPLGT 282

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE+Q+  LWK+    VLCFDGD  G +AA +A    L  L PG+ + F  L +G+DPD
Sbjct: 283 ALTEHQIERLWKMVEVPVLCFDGDGAGQKAAIRAAMRALPLLRPGHSLCFATLPKGQDPD 342

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  A + ++ ++ PL++ LW  E      +TP+++A L+  L+   + I D  +
Sbjct: 343 DLIRAKGPAAMQAVLDDAQPLIERLWAHELSAAPLDTPEQKAALKQRLRAISDAIADPDV 402

Query: 421 RYYYSQAIRDRLQQLFQKYIT------EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           R +Y+ A R+R   LF              G G   +     R    P            
Sbjct: 403 RAHYAHAFRERYGALFFARREAAPFQPRAPGGGGAQRWQRDRRGNWKPPIPPAGQEARAI 462

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                      A+L  L+ HP  +    + L+ +   +  L +L   +      ++    
Sbjct: 463 GAGGMEQRLLRAVLAALLRHPEQIAPHREMLSGLHIADPMLGQLMGAMIRCSFHKETVET 522

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E +   L +     + K + R      L  +    +   V +  ++A+ +  +       
Sbjct: 523 EGLLTILGQGDVYNMAKGMLR-ADTFTLTPSRMTTDPDRVARDLEEAVRVIAQGP----- 576

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVH-------IQIHQIESQEAMI 638
             E+E  + + T + E++ +    +    +         ++ ++   E  I
Sbjct: 577 --ELEAALVEATRRFESDFSEANFAEQQRIRALKADHDRRLAELAQSEDSI 625


>gi|117619022|ref|YP_855377.1| DNA primase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560429|gb|ABK37377.1| DNA primase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 595

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 175/631 (27%), Positives = 285/631 (45%), Gaps = 47/631 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI DLL+   I  LI   V   +   N     Y ACCPFH+EK+PSF  +  K F
Sbjct: 4   RIPQSFIDDLLVRTDIVELIDSRVRLKKAGKN-----YQACCPFHNEKSPSFTVSQEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118
           Y+CF C   G+ + F+    G  F ++++ LA++ G+ +P                 DL 
Sbjct: 59  YHCFGCGAHGNAIGFVMEYDGLEFPDAIEELASLHGMQVPREQTAGGASSSQPAVSKDLF 118

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            L+     F+  +LKN    +   YL  RG+    ++ F +GYAP     +R        
Sbjct: 119 ELMNQIARFYESNLKN--APQAVEYLKGRGLTGEVVKRFNIGYAPADWDQVRRRFGASRE 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            E+ +I  G+LI  D+   SYDRFR+R++FPIR  RG+VI FGGR L +G + KYLNSPE
Sbjct: 177 HEQLLISGGMLITRDSGPGSYDRFRDRIMFPIRDKRGRVIGFGGRVLGEG-TPKYLNSPE 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG+ L+  +      +   R          I++VEGYMDV++L Q  +   V++L
Sbjct: 236 TPIFHKGRELFGLYEVKQAHKDPRR----------ILVVEGYMDVVALGQYEIDYAVAAL 285

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T   +  L++ +  +V C+DGD+ G  AA++A+D  L HL  G  + FV L  GED
Sbjct: 286 GTATTSDHIHTLFRTTAEVVCCYDGDNAGREAAWRALDNALSHLQDGRELKFVFLPDGED 345

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK  FE L+ ++ P  D +++R   + + +    + E+       I  + + 
Sbjct: 346 PDSLVRQIGKEGFEALLDKAQPFADFMFERLGRDAALSGEAGKFEVANKAAELIRRVPEG 405

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R      +   ++    K   +         K   ++ +      L            
Sbjct: 406 FTREGLITRLSSMMRWGENKQRIDELFARNSQPKAEVNKPKAAKLTPL------------ 453

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                    L  ++ +PAI  E              ++ L   L    + Q       + 
Sbjct: 454 ------RRALALMVQYPAITAELPAMPELAGLRLQGIRFLLQ-LHQQILTQPEVTTGILL 506

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           +       GE+L QL        +        + +++  +   + L+     L ++ EE+
Sbjct: 507 EHWRGTKEGEILAQLAMHDLFEEVKLDQEPDILGELQDTFVGFINLF-----LKQRIEEL 561

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + ++AQ      +E+T  L+ ++ EV I+  
Sbjct: 562 QAKVAQ--EGLSSEETQELMMLIREVQIEKR 590


>gi|261325544|ref|ZP_05964741.1| DNA primase [Brucella neotomae 5K33]
 gi|261301524|gb|EEY05021.1| DNA primase [Brucella neotomae 5K33]
          Length = 478

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 217/458 (47%), Positives = 296/458 (64%), Gaps = 5/458 (1%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ ++   +PIS LIG  V +DR+K+N  KGD+WACCPFH EKTPSFHC D KG
Sbjct: 1   MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+R+A +AGVP+P  DP++EK E  +  L  +
Sbjct: 61  RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKCEAQRATLYDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L++A   +   YL +RG+ +   + F++GYAP+SR +L+E L  KG S 
Sbjct: 121 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++ G+  A SYDRFR+R++FPI   RG++IAFGGR LS     KYLNSPET 
Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LYN   A    Q           +  II VEGYMDV++L QAG+ +VV+ LGT
Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL LLW++SP  +LCFDGD  GLRAAY+A DL L  L PG  + F LL  G+DPD
Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G +AF  ++ ++ PLV+M+W RET    F+TP+ RAELE  L+   + I ++ +
Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           R +YSQ +R+R Q  F +        G+  +   R  +
Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNE 453


>gi|254852081|ref|ZP_05241429.1| DNA primase [Listeria monocytogenes FSL R2-503]
 gi|300765598|ref|ZP_07075577.1| DNA primase [Listeria monocytogenes FSL N1-017]
 gi|258605379|gb|EEW17987.1| DNA primase [Listeria monocytogenes FSL R2-503]
 gi|300513699|gb|EFK40767.1| DNA primase [Listeria monocytogenes FSL N1-017]
 gi|328465498|gb|EGF36727.1| DNA primase [Listeria monocytogenes 1816]
          Length = 626

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 156/649 (24%), Positives = 289/649 (44%), Gaps = 51/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +     I ++IG YV   ++  N     Y   CPFH EKTPSF  +  K  
Sbjct: 3   RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL------PVVDPKIEKKEKIQT 115
           ++CF C   G+  SFL    G +F+ESV+++A ++ + +            + K+     
Sbjct: 58  FHCFGCGKGGNVFSFLMEHDGLNFVESVKKVADMSHLDVAIKLPEERDTSNLPKETSETA 117

Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            ++ + ++    +H+ L           YL ERG+    +  F++G+AP+   ++   L 
Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMTTFQIGFAPNHHATITAFLE 177

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           ++G   +    AGLL + D+     DRFRNR++FPI + RGQ+IAF GR   + +  KYL
Sbjct: 178 KRGMDLQLAGRAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +F+K + L++F  A   ++K             I L+EG+MDV+S  +AGVQN 
Sbjct: 237 NSPETPVFNKRRILFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GT+LTE    L+ +L+ R ++C+DGD  G+ AAYKA  L++           + L 
Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344

Query: 355 RGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            G+DPD FIR  G   F++    + +             R+     ++          I 
Sbjct: 345 AGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIHYLRRERNLQNETDQIGYIDDCLREIA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463
            +     R  Y + + D  +   +    +     +  +K+ +      P           
Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSRQMASYNEPPIDDSFMGMMP 464

Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                ++ S     +     +  E  L+  ++          Q L D  + ++  + L++
Sbjct: 465 QEETEMLFSFEQPTQKLSAHTTSEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYKALYT 524

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
           +L   F E     P +    + +     L+  L+  +                 +  ++ 
Sbjct: 525 YLIGYFAEGNDADPTKFMDSVPDATMKGLISSLEMVIS-----------PDEQGKTQFED 573

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +   KRF+ L ++K+E+E+++A +  + + +    ++  + +++ Q++
Sbjct: 574 YIRSLKRFK-LEQKKKELEQELATLNRENDKDNEIRVMLEIVQLNRQLN 621


>gi|311031649|ref|ZP_07709739.1| DNA primase [Bacillus sp. m3-13]
          Length = 604

 Score =  385 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 155/634 (24%), Positives = 288/634 (45%), Gaps = 38/634 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +     I ++I +YV   ++  N     Y+  CPFH E TPSF  +  K  
Sbjct: 4   RIPEQTIDQIRQSTDIVDVISEYVQLKKQGRN-----YFGLCPFHGESTPSFSVSQEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           Y+CF C   G   +F+  + G SF+E+ Q+LA  + V +        +   + K    ++
Sbjct: 59  YHCFGCGAGGSAFNFIMEIEGVSFVEAAQKLAKSSNVEVEVPEYTATEQTGQSKETKWMM 118

Query: 119 RLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
               +   F+HH  L     +  + Y+  RG     ++ F +GYA +S     + L ++G
Sbjct: 119 DAHLLLHKFYHHLLLNTKEGQEAYDYVTGRGFTDETLKKFGVGYALNSWDFALKFLTKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           ++++ + +AGLLI+ +++A  +DRFRNR++FPI   +G VIAF GR L +GE  KYLNSP
Sbjct: 179 YNQQLLEKAGLLIEKEHTAEYFDRFRNRIMFPIHDHKGNVIAFSGRVLGEGEP-KYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LF+K K LYNF  A  +++K             +IL EG+ DV++   AG+ N +++
Sbjct: 238 ETPLFNKSKILYNFHQARPHIRKQ----------EQVILFEGFADVIAADGAGLPNGIAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT+LTE Q R++ +    + +C+DGD+ G+ AAY+A ++    +  G  V   ++    
Sbjct: 288 MGTSLTEDQARIIRRHVENVTICYDGDNAGIEAAYRAANI---LIQQGCYVRIAMMPDKM 344

Query: 358 DPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD +IR  G  +F + +I  SL  +    +   + R+     ER      +   I+ + 
Sbjct: 345 DPDDYIRSKGSDSFKQDVIGASLTFMAFKLRYLRKGRNMKDEGERMRYVEDVLKEISMLT 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               R +Y + + D           +     +   +   + +Q   +         +  L
Sbjct: 405 KAVERDHYLRQLADEFSISLDALKQQQFQVYKSLMQKKDYNEQNRINIPNKPKIFTQA-L 463

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++    + ++    +    +   E + + ++L++ + E        
Sbjct: 464 KPAYLNAERYLLAHMLKDRTVSEKVQASIEG-SFIIEEHRAIATYLYAFYEEGYEPNISI 522

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             +R+ E+   +++ +L       G+ +   E +   +    +Q     K         +
Sbjct: 523 FMERIPEQSLKKIISEL-------GMLTLEEELSDAVLHDYMKQVFNYPKLLT-----IK 570

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           E E+   Q  A+ +    A +   + ++  ++ Q
Sbjct: 571 EKEQDKKQAEAQNDYLGAAQIAMEIIQMKKELKQ 604


>gi|114771659|ref|ZP_01449063.1| DNA primase [alpha proteobacterium HTCC2255]
 gi|114547731|gb|EAU50621.1| DNA primase [alpha proteobacterium HTCC2255]
          Length = 656

 Score =  385 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 206/622 (33%), Positives = 326/622 (52%), Gaps = 16/622 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+++L     +S ++G+ V W+++KTN  KGDYWA CPFH EKT SFH +D KG
Sbjct: 1   MSLPPGFLEELRNRSSLSQVVGRKVTWEQKKTNIAKGDYWAPCPFHSEKTASFHVDDKKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD +SF+      SFIE+V+ LA  AG+ +P  DPK ++K  I  +L  +
Sbjct: 61  FYYCFGCHEKGDAISFIRNSENVSFIEAVEILAREAGLTMPARDPKAQEKIDINKELASI 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  F+      +  K    Y+  RG+ +  I  F++G+AP  R SL + L  KG  E
Sbjct: 121 MENAVQFYKMQFNGSNAKNAKDYIKSRGLTADIINTFEIGFAPGDRTSLSQFLLNKGIKE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            KII+AGL I  D+    +DRFR R++FPIR+++G+ IAFGGR +      KYLNS ET 
Sbjct: 181 NKIIDAGLAIKPDDGGNIFDRFRGRIMFPIRNTQGRCIAFGGRAMDPNARAKYLNSNETA 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG++LYN   A     K          ++ +I+ EGYMDV++L Q G ++ V+ LGT
Sbjct: 241 LFDKGRSLYNHAPAREASGK----------ANSLIVAEGYMDVIALSQFGFKHAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QL L+W++    ++  DGD  GLRAA + IDL L  L  G  + F +L  G+DPD
Sbjct: 291 AITENQLALIWRIHHEPIIALDGDTAGLRAAMRLIDLALPLLEAGKSLRFCILPLGQDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G T  ++L+  S+ +V++LW+RETE ++F++P+ RA L+  L+  +  I+D+ +
Sbjct: 351 DILKDKGATFLQELLDNSVSMVNLLWQRETEGKNFDSPERRALLDKSLRAAVLTIRDKSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP----SQRLMQSSLVKGKL 476
           R++Y QAI++   QLF       +   +     +     K P    S     S L     
Sbjct: 411 RHHYGQAIKELRYQLFSPINNNMNLANKSKSYGSSQSWGKKPKLLASPNTKSSMLAMQSD 470

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS--DFVEQKYFLP 534
                LRE+ +L++ I + +   +    L        +L ++ + +       +    + 
Sbjct: 471 ETNWRLRESLILVSAIKNQSAALKNESALERCPITTPDLVEIMNAVLINLHVKKTDAGIK 530

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           +     +        L +L +             +    V Q  ++ LA +        +
Sbjct: 531 DNFAINIQNSLGYSPLDKLMKLKPIKNHPYLKKNSPPDLVEQTLEEELAKHVALIGAFNE 590

Query: 595 KEEIEKQIAQVTAKGEAEKTAI 616
            +E E+ +  +  +G   +   
Sbjct: 591 IKEAEQDLTGLVDEGLTWRLQQ 612


>gi|260767411|ref|ZP_05876348.1| DNA primase [Vibrio furnissii CIP 102972]
 gi|260617523|gb|EEX42705.1| DNA primase [Vibrio furnissii CIP 102972]
          Length = 581

 Score =  385 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 171/632 (27%), Positives = 293/632 (46%), Gaps = 63/632 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--------EKKEKIQ 114
           +CF C V G+ + F+       F E+++ LA+  G+ +P  +               + +
Sbjct: 60  HCFGCGVHGNAIDFMMEYERLEFPEAIEELASFLGLDVPREERSNGGFNKNTPRANSEEK 119

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            +L  L+     F+   LK + ++    YL  RG+    ++ F +GY  D    +R++  
Sbjct: 120 RNLYDLMGSIAQFYRQQLKVSSNRDAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRKNFG 179

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           Q   +++ ++  G+LI+ DN    YDRFR R++FPIR  RG+VI FGGR L    + KYL
Sbjct: 180 QSRHNQDMLVSGGMLIENDNGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKYL 237

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKGK LY  +  L   +              I++VEGYMDV++L Q G+   
Sbjct: 238 NSPETPIFHKGKELYGLYEVLQAYR----------EPPQILVVEGYMDVVALAQYGIDYS 287

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGT+ T   L+LL++ +  +V C+DGD  G  AA++A++  L +L  GN + F+ L 
Sbjct: 288 VASLGTSTTGDHLQLLFRQTNTVVCCYDGDRAGREAAWRALENALSYLKSGNILKFLFLP 347

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            GEDPDS++R YGK AFE+ + E+ PL   L+       +    + +A LE      IN 
Sbjct: 348 DGEDPDSYVRKYGKEAFEQQMHEAEPLSKYLFSNLLSQVNVGNNEGKAALEAMALPLINK 407

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I D+ L+    + +  +            +G  +     +  + +  P + + ++ +   
Sbjct: 408 IPDESLQDQLLKILEQK------------TGIYKKPSLPSDAKSRPQPHKEIKRTPM--- 452

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                       ++  L+ +P+         +        L  L   +  +  +  +   
Sbjct: 453 ----------REVIALLLQNPSYADMVPDLTSVKGLAIPGL-SLLVEVLENCRQYPHIST 501

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            ++ +         LL +L        +     E  +  + +   Q +          +Q
Sbjct: 502 GQLLEHWRNSKNEALLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV---------EKQ 551

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            E ++ +  + +    AE+   L++++ E+  
Sbjct: 552 IENLQAK--ERSVGLSAEEKRELVALMLELKA 581


>gi|77461369|ref|YP_350876.1| DNA primase [Pseudomonas fluorescens Pf0-1]
 gi|77385372|gb|ABA76885.1| DNA primase [Pseudomonas fluorescens Pf0-1]
          Length = 655

 Score =  385 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 186/672 (27%), Positives = 294/672 (43%), Gaps = 80/672 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
           YCF C   G+ L FL       F ++V+ LA  AG+ +P  +     + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFLMDHDNLDFPQAVEDLAKAAGMEVPRDEGGRSNKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A DF+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LTAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLSSDTLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +IEAGLLI+   +   YDRFR+R++FPIR +RG++IAFGGR L   +  KYLNSPET
Sbjct: 180 QKAMIEAGLLIENAETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A    +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLYEARKNNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L  L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPSLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ IR  G  AF   +   + PL D  +++ TE     + + +A +       I+ +   
Sbjct: 349 DTLIRAEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK------------------NARHRDQK 460
            LR    Q + +      +          +                       ++ +D  
Sbjct: 409 NLRILMRQRLTEITGLSSESVSQLAQSAPQEAPPAYDPGIDYDAMPDYSDYHQSQAQDMY 468

Query: 461 GPSQRLMQSSL----------------------VKGKLSKKPSLRE---AALLLTLINHP 495
            P Q                              + +  + P+  E    A L TL++HP
Sbjct: 469 VPQQEWTPKKSGAGGKKWDKKPWDKNGKRGGDRDQPRAPRVPAAVEPPTLAALRTLLHHP 528

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + ++          +N    +L   L     +       ++  R      G LLK L  
Sbjct: 529 QLAEKVEDA-GHFADENQTNAQLLVALLEAVQKNPKLNSFQLIARWHGTEQGRLLKALAE 587

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           +      W    +            +L+  +R R L +   +  +          +E +A
Sbjct: 588 KE-----WLIDGDNLEQQFFDTIT-SLSARQRERNLEQLLRKARQ----------SELSA 631

Query: 616 ILISILHEVHIQ 627
              + L ++  +
Sbjct: 632 EEKNQLRDLLSR 643


>gi|134098092|ref|YP_001103753.1| DNA primase [Saccharopolyspora erythraea NRRL 2338]
 gi|291007449|ref|ZP_06565422.1| DNA primase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910715|emb|CAM00828.1| DNA primase (bacterial type) [Saccharopolyspora erythraea NRRL
           2338]
          Length = 630

 Score =  385 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 140/636 (22%), Positives = 248/636 (38%), Gaps = 37/636 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I ++     I +++G+YV       NA  G     CPFHDEKTPSF+     G 
Sbjct: 4   RIRESDIAEVRERNRIDDVVGEYVAL----RNAGGGALKGLCPFHDEKTPSFNVRPGHGT 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD ++FL       F+ESV+RLA   G+ L         K     +T ++ 
Sbjct: 60  FHCFGCGEGGDVIAFLMKSEHLGFVESVERLADRVGIQLQYEGGVAPSKRDRGTRTRMVE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              +A +F+   L++   +    YL  RG D  A   F  G+AP     L + L  KGF 
Sbjct: 120 AHRIAAEFYAEQLRSPEAQPAREYLARRGFDEAAATKFGCGFAPGGWDKLTKLLLGKGFE 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            +++ + GL  +        DRF  RL++P++   G V+ FG R +   + +  KY+N+ 
Sbjct: 180 LDELYKCGLAKE--GRRGPIDRFHRRLLWPLKDLGGDVVGFGARRIFDDDPIEAKYVNTS 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
            T LF+K + L+    A   + K              ++VEGY DV+++  AGV   ++S
Sbjct: 238 ATPLFNKSQVLFGIDLAKREIAK----------RRQAVVVEGYTDVMAMHLAGVPTAIAS 287

Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA  +  + +L +L          ++  FDGD+ G +AA KA +              
Sbjct: 288 CGTAFGDEHISVLRRLMMDNDRFSGEVIFTFDGDEAGQKAALKAFEGDQQFTT---HTYI 344

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G TA + ++     L +   + + +    ++ D R         
Sbjct: 345 AITPDGMDPCELREARGDTAVKDVVARRRELFEFAIRSKLKGFDLDSVDGRVAALQETVP 404

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKY-ITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
            +  IKD + R  ++  +        +   +              R R  +G     ++ 
Sbjct: 405 LVARIKDVERRDGFAAKLAWWAGWTDENQVVRRVREAAGTAPAKPRRRAPRGQEPLGIEV 464

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            L K      P   E   L   +  PA+    Y  L +  +      +L   + +     
Sbjct: 465 DLPKRPPRHDPRWLERETLKAALQVPALAGPLYDSLPEEAFTEPAYAELHRAVLAAGGTS 524

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                  +   +       + + L  +     L   T +    +    Y   +    +  
Sbjct: 525 SGLAGVALVDAVGRHCESSVTRSLLTE-----LAVETPDTKSEE-DPRYVGGVIARLQEC 578

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           L+SRQ  +I+ ++ +++   + ++   L   L  + 
Sbjct: 579 LVSRQIADIKSRVQRMSPLEDPDEYNALFGDLVALE 614


>gi|229592967|ref|YP_002875086.1| DNA primase [Pseudomonas fluorescens SBW25]
 gi|229364833|emb|CAY52871.1| DNA primase [Pseudomonas fluorescens SBW25]
          Length = 656

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 185/671 (27%), Positives = 297/671 (44%), Gaps = 77/671 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120
           YCF C   G+ L FL       F ++++ LA  AG+ +P  +     + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFLMDHDNLDFPQAIEDLAKAAGMEIPREESGRPHKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A DF+  +LK+  + K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LTAAADFYRQALKSHPQRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLL++   +   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPET
Sbjct: 180 QKAMIDAGLLVENAETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A    +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKNNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L  L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF   +   + PL D  +++ TE     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDR-------------------------------------LQQLFQKYIT 441
            LR    Q + +                                        Q  + Y  
Sbjct: 409 NLRTLMRQRLLEITGLSGEAVSQLAHSAPQDAPPAYDPGMDYDAMPDYSDFHQPQEAYTP 468

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA---ALLLTLINHPAIL 498
           + +   +      +  D+K  S+   +    +    + P   EA     L TLI+HP + 
Sbjct: 469 QQAWAPKKPGAGGKKWDKKPWSKNGKRGDNDEAYAPRTPVAVEAPTLIALRTLIHHPQLA 528

Query: 499 QEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           ++     +   + N  N   ++   L     +       ++  R      G LLK L  +
Sbjct: 529 EKVE---SADHFANASNTYAQVLIALIEAVQKNPKLNSIQLMARWHGTEQGRLLKALAEK 585

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                 W    +           + L+  +  + L    +   +          AE+   
Sbjct: 586 E-----WLIDGDNLEQQFLDTITR-LSAGQHTQTLDELIKRARQ------PDLSAEEKIQ 633

Query: 617 LISILHEVHIQ 627
           +   + ++  Q
Sbjct: 634 IAKQMRDLLKQ 644


>gi|297584636|ref|YP_003700416.1| DNA primase [Bacillus selenitireducens MLS10]
 gi|297143093|gb|ADH99850.1| DNA primase [Bacillus selenitireducens MLS10]
          Length = 604

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 161/630 (25%), Positives = 283/630 (44%), Gaps = 35/630 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P D I+++  +  I ++I ++V   ++        +   CPFH+E +PSF  +  K  
Sbjct: 4   RIPEDIIEEVRKNSDIVDVISEHVQLKKQGKG-----FVGLCPFHNENSPSFSISPDKQV 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIR 119
           Y+CF C   G+  SF   L G SF+ESVQ+LA  + + LP  V D + +++ +       
Sbjct: 59  YHCFGCGAGGNVFSFFQELEGLSFVESVQKLAERSRIELPDHVADIQGKRENESHAAFYD 118

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             E+A  +FHH L ++   K    YL +RG    AI+ +++GYAPDS   L   L ++GF
Sbjct: 119 AHELAAKYFHHVLVQSEEGKPAREYLRKRGFTQAAIDQYQVGYAPDSWDFLSGFLEKRGF 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S + +   GL+   ++    YDRFR+R++FPI +++G+ +AFGGR L      KYLNS E
Sbjct: 179 SMDDMASCGLVGRRESDGKPYDRFRDRIMFPIWNAQGKHVAFGGRGL-GDSQPKYLNSHE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + +F+K   LY F  A   ++K           +  +L EGY+DV++  +AG+ N ++SL
Sbjct: 238 SEIFNKSVTLYGFHLARPRIKK----------RNEAVLFEGYVDVIAAWRAGIDNGIASL 287

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA+T+ Q +++ + + R++LC+DGD  G +A YK   +    +  G  V+   L  G D
Sbjct: 288 GTAMTDQQAKMIRRNADRVLLCYDGDGAGQQATYKNARI---LMAAGLSVSVANLPEGYD 344

Query: 359 PDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD +IR +GK  F  ++I      +  L++     R      ER      L      I  
Sbjct: 345 PDDYIREFGKDRFVSEVIDNRKSWMAFLFQFFETGRDLTLEHERVAYIEDLLQETAGIDG 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R  Y   + +R          E +      +K    + ++   +++ + +    K+ 
Sbjct: 405 PVERDMYLHKLAERFNLSVDILREELTRIRSNQRKKEHKQVKEAIFKQVDKRA---KKMM 461

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  L+  ++    +  +  +E+    +     Q + + L+  + E     P   
Sbjct: 462 SAEENAERRLIAHMMYSKDVAMQVEEEIGA-SFQFEIYQAIAAHLYGYYAEGFQPEPALF 520

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +R+ +        +L              +     V   Y Q +    R   +   K+E
Sbjct: 521 LERIHDADVRNTAAELS--------MKQLEDDVSEQVLADYIQVIKNASRLHEVEELKKE 572

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            ++ I        AE    L  +   +  +
Sbjct: 573 QQQAIDNRDHLAAAEIGMKLNRLYRSLKYR 602


>gi|39998180|ref|NP_954131.1| DNA primase [Geobacter sulfurreducens PCA]
 gi|39985126|gb|AAR36481.1| DNA primase [Geobacter sulfurreducens PCA]
 gi|298507118|gb|ADI85841.1| DNA primase [Geobacter sulfurreducens KN400]
          Length = 587

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 160/635 (25%), Positives = 276/635 (43%), Gaps = 53/635 (8%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M+  P D I+++    PI  ++  YV   +   N     Y   CPFH EKTPSF+ N ++
Sbjct: 1   MSNIPDDKIREIRERAPILEVVSDYVSLRKSGAN-----YQGLCPFHGEKTPSFNVNPAR 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDL 117
           G ++CF C V G+ ++F+  + G SF E+V+ L    GV +         ++++  + +L
Sbjct: 56  GIFHCFGCGVGGNAITFVMKMEGLSFPEAVKFLGKRVGVEIEDRPVTAAEKRRQDEREEL 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             ++++A   +  +L +N        YL+ RG+D    E ++LG+APD    L  HL+ +
Sbjct: 116 YGIMDLAARLYREALERNEEAGAARRYLETRGVDRETSEAYRLGFAPDRWDYLSRHLQHR 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
             S +     GL +        +D FRNRL+F I    G+ I FGGR L      KY+NS
Sbjct: 176 KVSMDLAERLGL-VRRREGGGYFDIFRNRLLFAITDIHGRTIGFGGRVL-DDSLPKYINS 233

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ ++HK   L+    A   L+               I+VEGY D L+L QAGV+NVV+
Sbjct: 234 PESPIYHKSDVLFGVHLAKGALR----------EQGSAIIVEGYFDHLALYQAGVRNVVA 283

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           + GTALTE  ++LL + + +    FD D  G +A  +AIDL    L      + V L++G
Sbjct: 284 TCGTALTEGHVKLLRRYAGKAYTLFDADSAGRKATVRAIDL---FLAENFPAHVVELTQG 340

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDSF++  G   F   + ++ P  D L++         T + + ++   L   +  + 
Sbjct: 341 EDPDSFVKKEGADIFRTRLAKARPAFDFLFRDLLGQVDAGTVEGKLKVANELAPRLAKLA 400

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +   R  Y + I   L    +  +    G             +  P  R       +G  
Sbjct: 401 NPIERELYVKEIARVLGIDVRSLLRASGGAA---------GSRPDPLPRPTAERRPRGAG 451

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  +     +     +  A   +   EL  +   +      +      E
Sbjct: 452 P------EEMLLALMARSAEVADRVRRGEAAGLFR-PELAPVADAILERHSRRVEIDWGE 504

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +          EL+   + + R A           VDV + + Q     +R  L  ++ +
Sbjct: 505 LL---------ELVASPEEKGRIAAFLVNDDHLADVDVHKAFDQCRQALERGSL--KRLK 553

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           ++ +++A   +  +  +   L++ +  +  +  Q+
Sbjct: 554 DLARELAAADS--DTPRYRELLAEIEALRNRKSQL 586


>gi|262275020|ref|ZP_06052831.1| DNA primase [Grimontia hollisae CIP 101886]
 gi|262221583|gb|EEY72897.1| DNA primase [Grimontia hollisae CIP 101886]
          Length = 583

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 160/622 (25%), Positives = 282/622 (45%), Gaps = 53/622 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL  + I  LI   V   ++  N     Y ACCPFH+EKTPSF  +  K F
Sbjct: 4   KIPRSFIDDLLARLDIVELIDARVKLKKQGKN-----YGACCPFHNEKTPSFSVSQEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK-----EKIQTD 116
           Y+CF C   G+ + F+       F+E+++ LA+  G+ +P        K        + D
Sbjct: 59  YHCFGCGAHGNAIDFVMEYDRLEFVEAIEELASTLGLDVPREQSGGAPKGPYARSDQKRD 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L +++     F+   L++   K    YL  RG+    ++ F +GY  D    +R    + 
Sbjct: 119 LYQMMGQIAQFYQSGLRSDAGKTAIDYLKGRGLSGEIVKKFGIGYVADEWDQVRSRFGRD 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
             S++ ++  G+LI+ DN    YDRFR R++FPIR  RG+VI FGGR L    + KYLNS
Sbjct: 179 NTSQQALVSTGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKYLNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +FHKG+ LY  +  L   +              +++VEGYMDV++L Q G+   V+
Sbjct: 237 PETPIFHKGRELYGLYEVLQAHR----------EPKQLLVVEGYMDVVALAQFGIDYAVA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T   ++ L++ +  ++ C+DGD  G  AA++A++  L HL+ G ++ F+ L  G
Sbjct: 287 SLGTSTTAEHIQTLFRQTSNVICCYDGDRAGRDAAWRAMEQALPHLVDGRQLKFMFLPDG 346

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDS +R  GK  FE+ +  ++ L + L+    E    ++ + +A+L       I+ + 
Sbjct: 347 EDPDSMVRKEGKDGFEQRLASAMSLSEFLFNTLMEQVDTSSQEGKAKLTTLAVPLIDKVP 406

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              LR Y    +  +L    ++ + +        +        + P   + ++ +     
Sbjct: 407 GGTLRLYLRNMLGQKLGLPDEQQLEKLISRQGQAQ-------TRKPLPEIKRTPM----- 454

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     ++  L+ +P  ++           +   L  L++ +      +      +
Sbjct: 455 --------REVITLLLQNPGFVENVPPLEGVEELEIPGLN-LFTSMLELCRSRPNITTGQ 505

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + +         LL +L          +A  +  +  + +   Q +          +Q  
Sbjct: 506 LLEYWRGTDQEALLAKLASWELPINENNAL-DIFLDSLDKILDQCV---------KQQIA 555

Query: 597 EIEKQIAQVTAKGEAEKTAILI 618
           +++ +   V    E ++   L+
Sbjct: 556 KLQAKSNTVGLSVEEKRELQLL 577


>gi|323495835|ref|ZP_08100903.1| DNA primase [Vibrio sinaloensis DSM 21326]
 gi|323319051|gb|EGA71994.1| DNA primase [Vibrio sinaloensis DSM 21326]
          Length = 585

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/634 (27%), Positives = 291/634 (45%), Gaps = 63/634 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114
           +CF C   G+ + FL       F+E+++ LA+  G+ +P            + +     +
Sbjct: 60  HCFGCGAHGNAIDFLMEYERLEFVEAIEELASFLGLDVPREQRQGGGFQSNQPQASSAQK 119

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  L+     F+   LK +  K    YL ERG+    ++ F +GY  D    +R++  
Sbjct: 120 RSLYDLMGSIAQFYRDQLKQSSSKVAIEYLKERGLSGEIVQKFGIGYVADEWDLVRKNFG 179

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           Q+  ++E ++  G+LI+ D     YDRFR R++FPIR  RG+VI FGGR +    + KYL
Sbjct: 180 QQQQTQEMLVSGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVI-GDGTPKYL 237

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKGK LY  +  +   ++  +          I++VEGYMDV++L Q GV   
Sbjct: 238 NSPETPIFHKGKELYGLYEVMQAYREPAK----------ILVVEGYMDVVALAQYGVDYS 287

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGT+ T   ++LL++ +  +V C+DGD  G  AA++A++  L +L  GN + F+ L 
Sbjct: 288 VASLGTSTTGDHIQLLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLP 347

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCI 412
            GEDPDS++R YGK AFE+ I ++ PL   L+    E    N  + + ++ L  H    I
Sbjct: 348 DGEDPDSYVRKYGKAAFEEQIEKATPLSSYLFDNLIEIHQLNLGSNEGKSALRAHASALI 407

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           N I D      Y Q + ++L       + E +G+    ++  +   +  P          
Sbjct: 408 NKIPDP-----YFQELLEKL-------LDERTGFDNRLRQTRKKSAETRPQPHKEIKRTP 455

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
                         ++  LI +P+  Q      +        L  L+  +          
Sbjct: 456 M-----------REVIALLIQNPSYAQMVPDLSSVRELTVPGL-SLFVEVLEYCHMHPNV 503

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              ++ +         LL +L              +  +  + +   Q +          
Sbjct: 504 TTGQLIEHWRNSSHEALLSRLAGWEIPVED-DNEQDIFLDSLDKILAQCV---------E 553

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           +Q E ++ +  + +     E+   L++++ ++  
Sbjct: 554 KQIENLQAK--ERSVGLSTEERRELLALMLDLKA 585


>gi|289627701|ref|ZP_06460655.1| DNA primase [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330868478|gb|EGH03187.1| DNA primase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 651

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 180/668 (26%), Positives = 295/668 (44%), Gaps = 76/668 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-SDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF+  +   + PL D  +++ T+     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442
            LR    Q + +      +                                        +
Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPVDAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499
                +      + +       +  +    + +  + P+  E    A L TL++HP + +
Sbjct: 469 QEWTPKKTGGQNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +  +  +    ++    +L   L     +       ++  R      G LL+ L  +   
Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
              W    +            +L+  +R R L +   +  +           E +A    
Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEQLISKARQ----------TELSAEEKI 631

Query: 620 ILHEVHIQ 627
            L E+  +
Sbjct: 632 QLRELLNR 639


>gi|315282350|ref|ZP_07870779.1| DNA primase [Listeria marthii FSL S4-120]
 gi|313614011|gb|EFR87726.1| DNA primase [Listeria marthii FSL S4-120]
          Length = 627

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/650 (24%), Positives = 292/650 (44%), Gaps = 52/650 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +     I ++IG YV   ++  N     Y   CPFH EKTPSF  +  K  
Sbjct: 3   RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115
           ++CF C   G+  SFL    G +F+ESV+++A ++     + LP       + K+     
Sbjct: 58  FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVSIELPEERDTSNLPKETSETA 117

Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            ++ + ++    +H+ L           YL ERG+    +  F++G+AP+   ++   L 
Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGAAALTYLKERGMSEQMMTTFQIGFAPNHHATITSFLE 177

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           ++G   +    AGLL + D+     DRFRNR++FPI + RGQ+IAF GR   + +  KYL
Sbjct: 178 KRGMDLQLAGLAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +F+K + L++F  A   ++K             I L+EG+MDV+S  +AGVQN 
Sbjct: 237 NSPETPIFNKRRTLFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GT+LTE    L+ +L+ R ++C+DGD  G+ AAYKA  L++           + L 
Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344

Query: 355 RGEDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            G+DPD FIR  G   F+++   + +           + R+     ++          I 
Sbjct: 345 AGKDPDDFIRASGAEKFKEIYKQQRMTWTAFKIHYLRKERNLQNETDQIAYIDDCLREIA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP----------- 462
            +     R  Y + + D  +   +    +     +  +K+ +      P           
Sbjct: 405 KLDQAVERELYLKQLSDEFELTIETLKQQLQQSLKNSQKSQQMASYNEPPIDDSFMGMMP 464

Query: 463 ---SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
              ++ L        +     ++ E  L+  ++          Q L D  + ++  + L+
Sbjct: 465 QEDTEMLFSFEQPTQQKLSAHTISEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYEALY 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
           ++L   F E     P +    + +     L+  L+  +                 +  ++
Sbjct: 525 TYLIGYFAEGNDADPTKFMDSVPDAAMKGLISSLEMVIS-----------PDEQGKPQFE 573

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             +   KR++ L ++K+E+E+++A    + + E    ++  + +++ Q++
Sbjct: 574 DYIRSLKRYK-LEQKKKELEQELATYNRENDNENEIRVMLEIVQLNRQLN 622


>gi|170723971|ref|YP_001751659.1| DNA primase [Pseudomonas putida W619]
 gi|169761974|gb|ACA75290.1| DNA primase [Pseudomonas putida W619]
          Length = 660

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 178/673 (26%), Positives = 296/673 (43%), Gaps = 85/673 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DL+  + I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLINRLDIVDVVSSRVQLKKAGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P  + +   + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREEGRRGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           ++ A++F+  +L++    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LDAASEFYRQALRSHPTRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   S   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLYEARKHNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G +AA++A++  L  L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSALQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           DS +R  G  AF   +   + PL D  +++ +      + + +A +       I  I   
Sbjct: 349 DSLVRAEGTDAFMARINQHAQPLADYFFEQLSVEADPRSLEGKAHMATLAAPLIEKIPGA 408

Query: 419 KLRYYYSQAIRDRLQQL------------------------------------------- 435
            LR      +++                                                
Sbjct: 409 NLRQLMRNRLKEITGLDPQQVEQLAQQAPAANSVPDYDPGYDYDAMASYTPDYGDMPQHD 468

Query: 436 -----FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
                 ++    + G G+    +      +   +   Q      +          A L T
Sbjct: 469 YAPAQQEQQWKPNKGGGKKPWSDKPWDKNRKAGKPWQQRDEAPPRTPAPVEPPTLAALRT 528

Query: 491 LINHPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           L++HP +  +         + + E    +L   L     +       ++  R      G 
Sbjct: 529 LLHHPLLAGKVEDA---SHFADEEHLYSQLLVALIEAAQKNPGLSSMQLIARWHGTEQGR 585

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           LL+ L  +      W    +            +L+  +R R L     +  +      ++
Sbjct: 586 LLRALAEKE-----WLIVADNLEQQFFDTIT-SLSARQRERSLEHLLRKARQ------SE 633

Query: 609 GEAEKTAILISIL 621
             +E+ + L+++L
Sbjct: 634 LSSEEKSQLLALL 646


>gi|289705781|ref|ZP_06502164.1| DNA primase [Micrococcus luteus SK58]
 gi|289557497|gb|EFD50805.1| DNA primase [Micrococcus luteus SK58]
          Length = 636

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 166/657 (25%), Positives = 270/657 (41%), Gaps = 53/657 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  I  +     +  ++ ++V           G +   CPFHDE+TPSFH     G Y
Sbjct: 5   IVRKDIDLVRERTDLKAVVEEFVTLRSAG----VGSFKGLCPFHDERTPSFHVRPGVGTY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLIR 119
           +CF C   GD +SFL  L   +F+E+V+RLA+  GV L   D      + +   +  L  
Sbjct: 61  HCFGCGAHGDVISFLMELEHTTFMETVERLASRVGVELHYEDGGTGPDKAETGRRRRLFE 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             +VA +FF  +L +   +    +L +RG        F LGYAP     L +HLRQ+GF 
Sbjct: 121 ANKVADEFFRRALGSPEAQAARDFLTQRGFTQEHAAQFGLGYAPQGWSHLLDHLRQRGFR 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           +E++  +GL+ +G      YDRFR RL++PIR   G  I FG R L   +   KYLN+PE
Sbjct: 181 DEELRASGLVSEGQR--GLYDRFRGRLLWPIRDMTGATIGFGARKLYDDDPGPKYLNTPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A   + K             ++LVEGY DV++   AGV   V++ 
Sbjct: 239 TPLYKKSQVLYGIDLAKRTIAK----------ERQLVLVEGYTDVMAAHLAGVGTAVATC 288

Query: 299 GTALTEYQLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           GTA     +++  +L         ++  FDGD+ G +AA KA D     L    +    +
Sbjct: 289 GTAFGADHIKVARRLISDDGTGGEVIFTFDGDEAGQKAALKAFDEDHRFLA---KTFVAV 345

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP       G  A   LI    PL +   +   ++   NT + RA    H    +
Sbjct: 346 EPSGMDPCDLRMQKGDEAVRALIASRRPLFEFAIRAGLKDYDLNTVEGRAGALRHAAPIV 405

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR------- 465
             IKD  LR  Y + +   L           +  GR  ++      +  P+         
Sbjct: 406 AGIKDAVLRPGYERELAGWLGLDPNAVHRAVAAAGRAPRRGPEPEARPTPASDGQAVGPQ 465

Query: 466 --------LMQSSLVKGKLSKKPSLREAALLLTLINHPAIL-QEQYQELADIRYDNNELQ 516
                        +V        + RE   L  ++ HP +L  EQ+  L   R+   +  
Sbjct: 466 GRHGEAAAPAPRIVVPVDPRDPVARRERESLEVVLQHPTLLSAEQWTALYAARFTVPQYA 525

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            +   +                QR  +     + +++   V +  +          DV +
Sbjct: 526 AVHQGVKVAGSAGATP------QRWVDAVRDAVPQEVAGVVSELAVRDL-PARTPEDVDR 578

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             +  +      +++ R KEE+  ++ ++  +G+  +   L S L E+  +   + +
Sbjct: 579 YCRDIMNRLFALQIVHR-KEELLGRLQRLGPEGDPAEFTRLNSELMELEARRRALRA 634


>gi|167630064|ref|YP_001680563.1| DNA primase [Heliobacterium modesticaldum Ice1]
 gi|167592804|gb|ABZ84552.1| DNA primase [Heliobacterium modesticaldum Ice1]
          Length = 656

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 162/682 (23%), Positives = 283/682 (41%), Gaps = 72/682 (10%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M      + ++   + I  ++  YV   R+      G Y   CPFH EKTPSF  +  K 
Sbjct: 1   MR-DPQIVDEIRHRLDIVEIVADYVALKRQG-----GRYVGLCPFHSEKTPSFTVSRDKQ 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118
           +++CF C   GD  +F+      +F E++++LA  AGV LP     P  + +        
Sbjct: 55  YFHCFGCGTGGDVFTFVMLRENLTFPEALKKLAERAGVTLPERKLTPTQQAQRTAVERGR 114

Query: 119 RLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L + A + +   L+   R +    YL  RG+       F LG+AP     L   L+Q+G
Sbjct: 115 ALHKRAAELYFRCLREDARARPGREYLSRRGVSDSVAVDFGLGFAPPGWEFLATRLQQEG 174

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           +  E++   GL++        YDRFRNR+IFPI  ++G+ +AFGGR L      KYLNSP
Sbjct: 175 YLPEELERFGLIVPRQGGEGYYDRFRNRIIFPIFDAQGRPVAFGGRVL-DDAVPKYLNSP 233

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET L+ KG++LY    A + ++               +LVEGYMDV++  Q G++  V+S
Sbjct: 234 ETPLYKKGQHLYGLNKAGSAIR----------EKGVAVLVEGYMDVIACHQHGIRQAVAS 283

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA+T  Q RLL +  PR+++C+D D  G+ AA KA  ++      G ++  + L  G+
Sbjct: 284 LGTAMTPEQGRLLLRYGPRVLICYDSDRAGVEAAVKAGGILTAL---GAQIQVLTLPEGK 340

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ +G  +F     ++       + R    +  ++   +A +   L + +  +  
Sbjct: 341 DPDEYLQRHGADSFWLAAEQAPSFFTFCYSRAAAAQDLSSAVGKASVVRELASLLLTMPS 400

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS------- 470
              +    Q +   L+      + E  GY R  +     ++    +      +       
Sbjct: 401 AVEQEANIQWLARELRLSEAAVMEEIRGYARNARAPGMRKENIRHTISASAPAWGDGDAG 460

Query: 471 ----------------------LVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL-AD 507
                                   +   + +       LL  +I  P  ++  ++ L  +
Sbjct: 461 TQAAPGDAGAADGLTARSAGGGEQRQHSANRKEQAWRYLLYWMIEDPDRVRWVFERLGEE 520

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEE-IHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           I   +  L ++ + L +   E         + +RL        L  L             
Sbjct: 521 IPRADEPLGEILAALTAVCDEGGRGSLAGRVAERLSTDKAKGYLSALL------------ 568

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
                +  R+   +      R+  L+ +   +E Q+   +  G+ E    L+  L     
Sbjct: 569 --VEDILCREPVIEDCINTLRYGWLTEEIASLESQVDAFSRSGDMEAMQRLLPRL----A 622

Query: 627 QIHQIESQEAMIEGFGKMSGRL 648
           ++ Q  ++ A  +G     GRL
Sbjct: 623 KLQQARNRAARRQGAMPFGGRL 644


>gi|330721842|gb|EGG99812.1| DNA primase [gamma proteobacterium IMCC2047]
          Length = 639

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 180/664 (27%), Positives = 283/664 (42%), Gaps = 66/664 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I  +I   V   +   N     Y   CPFH+EK+PSF  + SK FY
Sbjct: 5   IPQHFIDDLLDRTDIVEVIDGRVALRKSGQN-----YSGLCPFHNEKSPSFTVSQSKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G+ + FL       F ++V+ LA  AGV +PV      +K+K Q  L   ++
Sbjct: 60  HCFGCGAHGNAIGFLMEFDRMEFPQAVEHLARQAGVEVPVERSANPEKKKKQDSLYDQLQ 119

Query: 123 VATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A DFF   L+    K     YL  R +     + F +GYAP    +LRE L +    E+
Sbjct: 120 KAQDFFSQQLRQHPSKERAINYLKGRQLTGETAKAFAIGYAPPGWENLRETLSKSEKDEQ 179

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           ++IEAGLLI  ++    YDRFR+R+IFPIR +RG+ IAFGGR L   +  KYLNSPE+ +
Sbjct: 180 QLIEAGLLIKREDRDGCYDRFRDRIIFPIRDNRGRTIAFGGRVL-GDDKPKYLNSPESPV 238

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHKG  LY  + A     +  R           ++VEGYMDV++L Q G+   V++LGT+
Sbjct: 239 FHKGNELYGLYEARQASNRLSR----------FLIVEGYMDVVALAQHGIHYTVATLGTS 288

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            +E  L  L+++   ++ CFDGDD G +AA +A+D  L  L  G +V F+ L  GEDPDS
Sbjct: 289 ASEAHLNKLFRMVSEVIFCFDGDDAGRKAAARALDTALPILEDGRQVRFLFLPEGEDPDS 348

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +   GK AFE+ + +++ L D L+   ++  + +  D++A +       +  +    L 
Sbjct: 349 LVHQEGKDAFEQRLNQAMTLPDYLFAAVSDGLNLDNLDDKARMSKLALEKMQPMPRGMLY 408

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------------------------ 457
               Q +               +                                     
Sbjct: 409 ELMIQQLAQMTGLSADNLKETAANITPKKTATNPSPAYGSNELAQGNATPSATDGYEDMP 468

Query: 458 ----------DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                     +    +    Q+S      S+     E A    L++HP +        A 
Sbjct: 469 DFHADYNGDFEASYSTPHASQTSAPPRPRSRVTEPAEKAA-ALLLHHPELANTVSDIEAL 527

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
              D+  +++L   +      Q      +I          E  + L        L +   
Sbjct: 528 RHIDSPGMEQLIE-ILELLKSQPQLNTADILAHWMGAHGMEAAETLKSLAEREQLVTP-- 584

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                D  + Y Q+  L  +   + +Q++++  Q A      +       +  L  +   
Sbjct: 585 -----DNIENYFQSSLLLLQKHHVEQQRDQLYAQAAHTPLTSDE------MQQLKALTEA 633

Query: 628 IHQI 631
             ++
Sbjct: 634 ARKL 637


>gi|328471948|gb|EGF42825.1| DNA primase [Vibrio parahaemolyticus 10329]
          Length = 586

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/635 (27%), Positives = 290/635 (45%), Gaps = 64/635 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---------EKKEKI 113
           +CF C   G+ + F+       F+E+++ LA+  G+ +P               +     
Sbjct: 60  HCFGCGAHGNAIDFMMEFERLEFVEAIEELASYLGLDVPREQRSGGGGQFKSGPQASSSE 119

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+ + LK    K    YL +RG+    ++ F +GY  D    +R++ 
Sbjct: 120 KRSLYDLMGSIAQFYRNQLKQPSSKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q   +++ ++  G+LI+ D     YDRFR R++FPIR  RG+VI FGGR L +G + KY
Sbjct: 180 GQNKDNQDMLVTGGMLIENDKGNR-YDRFRGRIMFPIRDRRGRVIGFGGRVLGEG-TPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAHREPA----------QILVVEGYMDVVALAQYGVDY 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   +++L++ +  +V C+DGD  G  AA++A++  L  L  GN + F+ L
Sbjct: 288 SVASLGTSTTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQFLKTGNTLKFLFL 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK AFE+ I ++ PL   L+    E    N    + ++ L  +    
Sbjct: 348 PDGEDPDSYVRKYGKAAFEQQIEQATPLSSYLFDNLIELHQINLGNNEGKSALRAYASAL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D      Y Q + ++L       + E +G+    ++  +   +  P         
Sbjct: 408 IDKIPDP-----YFQELLEKL-------LDERTGFDNRLRQPRKKISETRPQPHKEIKRT 455

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  LI +P+  Q      +        L  L++ +        +
Sbjct: 456 PM-----------REVIALLIQNPSYAQMVPDLSSVRDLSIPGL-SLFADVLDKCQAHPH 503

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +         LL +L              E  +  + +   Q +         
Sbjct: 504 INTGQLLEHWRNSQNEALLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV--------- 553

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            +Q E ++ +   V     AE+   L++++ ++  
Sbjct: 554 EKQIENLQAKARSVGLS--AEEKRELLALMLDLKA 586


>gi|156973169|ref|YP_001444076.1| DNA primase [Vibrio harveyi ATCC BAA-1116]
 gi|156524763|gb|ABU69849.1| hypothetical protein VIBHAR_00849 [Vibrio harveyi ATCC BAA-1116]
          Length = 586

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/635 (27%), Positives = 292/635 (45%), Gaps = 64/635 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---------DPKIEKKEKI 113
           +CF C V G+ + F+       F+E+++ LA+  G+ +P           +   +     
Sbjct: 60  HCFGCGVHGNAIDFIMEFERLEFVEAIEELASYLGLDVPREQRSGGGGQFNSGPQASSSE 119

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + +L  L+     F+ + LK    K    YL +RG+    ++ F +GY  D    +R++ 
Sbjct: 120 KRNLYDLMGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q   +++ ++  G+LI+ D     YDRFR R++FPIR  RG+VI FGGR L    + KY
Sbjct: 180 GQNKDNQDMLVTGGMLIENDKGNR-YDRFRGRIMFPIRDRRGRVIGFGGRVL-GDGTPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++  R          +++VEGYMDV++L Q GV  
Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPPR----------VLVVEGYMDVVALAQYGVDY 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   +++L++ +  +V C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 288 SVASLGTSTTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFL 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK AFE+ I ++ PL   L+    E    N    + ++ L  +    
Sbjct: 348 PDGEDPDSYVRKYGKQAFEQQIEQATPLSSYLFDNLIELHQINLGNNEGKSALRAYASAL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D      Y Q + ++L       + E +G+    ++  +   +  P         
Sbjct: 408 IDKIPDP-----YFQELLEKL-------LDERTGFDNRLRQPRKKTSETRPQPHKEIKRT 455

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  LI +P+  Q      +        L  L+  +        +
Sbjct: 456 PM-----------REVIALLIQNPSYAQMVPDLSSVRELSIPGL-SLFVDVLDKCQAHPH 503

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +         LL +L              E  +  + +   Q +         
Sbjct: 504 ISTGQLLEHWRNSQNETLLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV--------- 553

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            +Q E ++ +   V     AE+   L++++ ++  
Sbjct: 554 EKQIENLQAKARSVGLS--AEEKRELLALMLDLKA 586


>gi|294629208|ref|ZP_06707768.1| DNA primase [Streptomyces sp. e14]
 gi|292832541|gb|EFF90890.1| DNA primase [Streptomyces sp. e14]
          Length = 638

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 146/638 (22%), Positives = 263/638 (41%), Gaps = 39/638 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  + SKG 
Sbjct: 4   RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD ++F+  +   SF E+V+RLAA AG+ L   +       +   +  L+ 
Sbjct: 60  FHCFGCQEGGDTITFVMKIDHLSFSEAVERLAAQAGITLRYEEGGYNPAHQRGERIRLVE 119

Query: 120 LIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             ++A +++   L + A  +    +L  RG D  A   F +GY+P     L   LR KGF
Sbjct: 120 AHKLAAEWYAEQLASLAEAEAGRVFLAGRGFDQAAALHFGVGYSPQGWDHLTRFLRGKGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237
           +++++I +GL  +        DRFR RL++PIR   G+V+ FG R L +     KYLN+P
Sbjct: 180 TDKELILSGLAQE--GRRGPIDRFRGRLMWPIRDIGGEVVGFGARKLYEADNGPKYLNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++ K + LY    A   + K  R           ++VEGY DV++   AGV   +++
Sbjct: 238 ETPIYKKSQVLYGIDLAKKEIAKVSRA----------VVVEGYTDVMACHLAGVTTAIAT 287

Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            GTA     +++L +L       R++  FDGD  G +AA +A +               +
Sbjct: 288 CGTAFGGEHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP       G  A   L+    PL +   ++       +TP  RA         +
Sbjct: 345 APDGMDPCDLRLAKGDDAVADLVEPRTPLFEFALRQIVARYDLDTPGGRAAALDEAAPVV 404

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEH---------SGYGRYWKKNARHRDQKGPS 463
             +K++ +R   +  +   +  L Q+++            SG       ++R   ++  +
Sbjct: 405 AKLKERTVRREVAVQLAGLIGILDQEHVVNRVGYLAHRGLSGGSSLRSAHSRTHPERYVA 464

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                 +     L       E  LL   +  P ++   +       +       +   + 
Sbjct: 465 VSRPAVTGPALTLRNPVYATERELLKLALQRPELVSPAFDAYGVDEFTAPPYAAVRQAIL 524

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                +      +    L          Q+   V +  +          +  + Y  A  
Sbjct: 525 DAGGAEYGLSDAQ--DYLVSVREAAPDDQVRAMVTELAVEPIKLHKGAREADEAYAGAQL 582

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
           +  R R + R+ +E++  + ++ + G+  + A   + L
Sbjct: 583 VTVRRRAVMRRIQEVQVTVRRLESGGDPAQLAAAQNEL 620


>gi|148266059|ref|YP_001232765.1| DNA primase [Geobacter uraniireducens Rf4]
 gi|146399559|gb|ABQ28192.1| DNA primase [Geobacter uraniireducens Rf4]
          Length = 587

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 152/635 (23%), Positives = 281/635 (44%), Gaps = 53/635 (8%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M+  P D + ++     I ++I  YV   +   N     Y   CPFH EKTPSF+ N  +
Sbjct: 1   MSMIPDDKVSEVRERAAILDVISDYVSLRKSGAN-----YQGLCPFHGEKTPSFNVNPGR 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDL 117
           G ++CF C V G+ ++F+  + G +F E+V+ LA   GV +         +++   +   
Sbjct: 56  GIFHCFGCGVGGNAITFIMKIEGLTFPEAVKFLAKRVGVIIEERPLTATEKRQTDERELF 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            R+ E A  F+   L +    +    YL+ RG+D+   E + +G+APD    L  +L Q+
Sbjct: 116 FRINEQAAKFYRRVLVQEPAGEAGRRYLERRGVDAATSEAYCIGFAPDKWDGLTRYLEQQ 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
                   + GL +   +S   YD FRNRL+F I    G+ I FGGR L      KY+NS
Sbjct: 176 RVPLPLAEKLGL-VKLRDSGGYYDTFRNRLLFVIADMHGRPIGFGGRVL-DDSLPKYINS 233

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ ++HK + L+    A   ++               I+VEGY D L+L QAGV+NVV+
Sbjct: 234 PESPIYHKSEVLFGLNLAKQAMR----------EQGTAIIVEGYFDHLALFQAGVRNVVA 283

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           + GTA+T   ++LL + + ++   FDGD+ G +A  ++++L L         + + L  G
Sbjct: 284 TCGTAMTAGHVKLLQRYAGKVYTLFDGDNAGKKATLRSMELFLEEKY---AAHVIELPAG 340

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPDS+++  G  AF   + ++ P+ +             T + + ++   L   +  I 
Sbjct: 341 DDPDSYLKKEGSEAFAGQVAKARPIFEFFLYDLMHQFDSRTVEGKVQIIELLTPRLMKIA 400

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +   R  Y + I   L    ++   +                +   S   + S   + K 
Sbjct: 401 NPIERDLYLKEISRMLGVDLRQLQKKI--------------GRSPISTADLASPPERKKR 446

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
              P   E  L+  +  +P +++   +  A   +   +L  +   + +            
Sbjct: 447 GIGP---EEMLVSLMGKYPEVVKRVREYGAANLFG-PDLLPVVETIMTQTDAGSEVDWGV 502

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +++            + + R A L+        +D  + + Q      R  L  +  +
Sbjct: 503 IMEQVGSA---------EERSRLAALFMNDCHLEEIDANKAFDQCRMSRDRSTLKDKDVK 553

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           E+++++AQ+ +  ++E+   ++ IL  +  +  Q+
Sbjct: 554 ELKRELAQLDS--DSERYWEILKILDALRNKKSQL 586


>gi|330961075|gb|EGH61335.1| DNA primase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 651

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 178/661 (26%), Positives = 296/661 (44%), Gaps = 69/661 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YSACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LNAAAEFYRQALKSHPARKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDALQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A+D  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALDATLSNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF+  +   + PL D  +++ T+     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442
            LR    Q + +      +                                        +
Sbjct: 409 NLRTLMRQRLSEITGLTGEAVSQLVQSAPAEAPPSYNPYVDYDAAPDFADYQPQGGYEAQ 468

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499
                +      + +       +  +    + +  + P+  E    A L TL++HP + +
Sbjct: 469 QEWTPKKTGGPNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +  +  +    ++    +L   L     +       ++  R      G LL+ L  +   
Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPSLRSLQLIARWHGTEQGRLLRALAEKE-- 585

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
              W    +            +L+  +R R L     +  +   +++ + E  +   L++
Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ--TELSPE-EKIQLRELLN 638

Query: 620 I 620
            
Sbjct: 639 R 639


>gi|145300337|ref|YP_001143178.1| DNA primase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853109|gb|ABO91430.1| DNA primase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 595

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 168/631 (26%), Positives = 282/631 (44%), Gaps = 47/631 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI DLL+   I  LI   V   +   N     Y ACCPFH+EK+PSF  +  K F
Sbjct: 4   RIPQSFIDDLLVRTDIVELIDSRVRLKKAGKN-----YQACCPFHNEKSPSFTVSQEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP---KIEKKEKIQTDLI 118
           Y+CF C   G+ + F+    G  F ++++ LA++ G+ +P           +  +  +L 
Sbjct: 59  YHCFGCGAHGNAIGFVMEYDGLEFPDAIEELASMQGMQVPREQSMGGSASSQPAVSKELY 118

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            L+     F+  +LK+    +   YL  RG+    ++ F +GYAP     +R        
Sbjct: 119 ELMSQIARFYESNLKS--APQAVEYLKGRGLTGEVVKRFNIGYAPADWDQVRRRFGASRD 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            E+ +I  G+LI  D+ A SYDRFR+R++FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 177 HEQLLISGGMLITRDSGAGSYDRFRDRIMFPIRDKRGRVIGFGGRVL-GDGTPKYLNSPE 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG+ L+  +      +   R          I++VEGYMDV++L Q  +   V++L
Sbjct: 236 TPIFHKGRELFGLYEVKQAHKDPRR----------ILVVEGYMDVVALGQYDIDYAVAAL 285

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T   +  L++ +  +V C+DGD+ G  AA++A+D  L HL  G  + FV L  GED
Sbjct: 286 GTSTTTDHIHTLFRTTAEVVCCYDGDNAGREAAWRALDNALSHLQDGRELKFVFLPDGED 345

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK  FE L+ ++ P  D +++R   + + +    + E+       I  + + 
Sbjct: 346 PDSLVRQIGKEGFEALLDQAQPFADFMFERLGRDAALSGEAGKFEVANKAAELIRRVPEG 405

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R      +   ++    K             K    + +      L            
Sbjct: 406 FTREGLITRLSSMMRWGENKQRIAELFARNSQPKAELTKPKAAKLTPL------------ 453

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                    L  ++ +P++  E              ++ L   L    + Q       + 
Sbjct: 454 ------RRALALMVQYPSVTAELPAMPELAGLRVQGIKFLLQ-LHQQILAQSGITTGILL 506

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           +       GE+L QL        +        + +++  +   +      + L ++ EE+
Sbjct: 507 EHWRGTKEGEILAQLAMHDLFEEVKLDQEPDILGELQDTFVGFIN-----QFLKQRIEEL 561

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + ++AQ      +E+T  L+ ++ EV  +  
Sbjct: 562 QAKVAQ--EGLSSEETQELMMLIREVQTEKR 590


>gi|153834243|ref|ZP_01986910.1| DNA primase [Vibrio harveyi HY01]
 gi|148869431|gb|EDL68437.1| DNA primase [Vibrio harveyi HY01]
          Length = 586

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/635 (27%), Positives = 292/635 (45%), Gaps = 64/635 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---------DPKIEKKEKI 113
           +CF C V G+ + F+       F+E+++ LA+  G+ +P           +   +     
Sbjct: 60  HCFGCGVHGNAIDFIMEFERLEFVEAIEELASYLGLDVPREQRSGGGGQFNSGPQASSSE 119

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + +L  L+     F+ + LK    K    YL +RG+    ++ F +GY  D    +R++ 
Sbjct: 120 KRNLYDLMGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q   +++ ++  G+LI+ D     YDRFR R++FPIR  RG+VI FGGR L    + KY
Sbjct: 180 GQNKDNQDMLVTGGMLIENDKGNR-YDRFRGRIMFPIRDRRGRVIGFGGRVL-GDGTPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++  R          +++VEGYMDV++L Q GV  
Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPPR----------VLVVEGYMDVVALAQYGVDY 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   +++L++ +  +V C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 288 SVASLGTSTTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFL 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK AFE+ I ++ PL   L+    E    N    + ++ L  +    
Sbjct: 348 PDGEDPDSYVRKYGKQAFEQQIEQATPLSSYLFDNLIELHQINLGNNEGKSALRAYASAL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D      Y Q + ++L       + E +G+    ++  +   +  P         
Sbjct: 408 IDKIPDP-----YFQELLEKL-------LDERTGFDNRLRQPRKKTSETRPQPHKEIKRT 455

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  LI +P+  Q      +        L  L+  +        +
Sbjct: 456 PM-----------REVIALLIQNPSYAQMVPDLSSVRELSIPGL-SLFVDVLDKCQAHPH 503

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +         LL +L              E  +  + +   Q +         
Sbjct: 504 INTGQLLEHWRNSQNETLLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV--------- 553

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            +Q E ++ +   V     AE+   L++++ ++  
Sbjct: 554 EKQIENLQAKARSVGLS--AEEKRELLALMLDLKA 586


>gi|28897179|ref|NP_796784.1| DNA primase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839253|ref|ZP_01991920.1| DNA primase [Vibrio parahaemolyticus AQ3810]
 gi|260361471|ref|ZP_05774530.1| DNA primase [Vibrio parahaemolyticus K5030]
 gi|260878084|ref|ZP_05890439.1| DNA primase [Vibrio parahaemolyticus AN-5034]
 gi|260896979|ref|ZP_05905475.1| DNA primase [Vibrio parahaemolyticus Peru-466]
 gi|28805388|dbj|BAC58668.1| DNA primase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747218|gb|EDM58206.1| DNA primase [Vibrio parahaemolyticus AQ3810]
 gi|308088718|gb|EFO38413.1| DNA primase [Vibrio parahaemolyticus Peru-466]
 gi|308090022|gb|EFO39717.1| DNA primase [Vibrio parahaemolyticus AN-5034]
 gi|308110979|gb|EFO48519.1| DNA primase [Vibrio parahaemolyticus K5030]
          Length = 586

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/635 (27%), Positives = 290/635 (45%), Gaps = 64/635 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---------EKKEKI 113
           +CF C   G+ + F+       F+E+++ LA+  G+ +P               +     
Sbjct: 60  HCFGCGAHGNAIDFMMEFERLEFVEAIEELASYLGLDVPREQRSGGSGQFKSGPQASSSE 119

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+ + LK    K    YL +RG+    ++ F +GY  D    +R++ 
Sbjct: 120 KRSLYDLMGSIAQFYRNQLKQPSSKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q   +++ ++  G+LI+ D     YDRFR R++FPIR  RG+VI FGGR L +G + KY
Sbjct: 180 GQNKDNQDMLVTGGMLIENDKGNR-YDRFRGRIMFPIRDRRGRVIGFGGRVLGEG-TPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAHREPA----------QILVVEGYMDVVALAQYGVDY 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   +++L++ +  +V C+DGD  G  AA++A++  L  L  GN + F+ L
Sbjct: 288 SVASLGTSTTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQFLKTGNTLKFLFL 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK AFE+ I ++ PL   L+    E    N    + ++ L  +    
Sbjct: 348 PDGEDPDSYVRKYGKAAFEQQIEQATPLSSYLFDNLIELHQINLGNNEGKSALRAYASAL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D      Y Q + ++L       + E +G+    ++  +   +  P         
Sbjct: 408 IDKIPDP-----YFQELLEKL-------LDERTGFDNRLRQPRKKISETRPQPHKEIKRT 455

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  LI +P+  Q      +        L  L++ +        +
Sbjct: 456 PM-----------REVIALLIQNPSYAQMVPDLSSVRDLSIPGL-SLFADVLDKCQAHPH 503

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +         LL +L              E  +  + +   Q +         
Sbjct: 504 INTGQLLEHWRNSQNEALLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV--------- 553

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            +Q E ++ +   V     AE+   L++++ ++  
Sbjct: 554 EKQIENLQAKARSVGLS--AEEKRELLALMLDLKA 586


>gi|330831099|ref|YP_004394051.1| DNA primase [Aeromonas veronii B565]
 gi|328806235|gb|AEB51434.1| DNA primase [Aeromonas veronii B565]
          Length = 595

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 172/631 (27%), Positives = 281/631 (44%), Gaps = 47/631 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI DLL+   I  LI   V   +   N     Y ACCPFH+EK+PSF  +  K F
Sbjct: 4   RIPQSFIDDLLVRTDIVELIDSRVRLKKAGKN-----YQACCPFHNEKSPSFTVSQEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP---KIEKKEKIQTDLI 118
           Y+CF C   G+ + F+    G  F ++++ LA++ G+ +P           +  +  DL 
Sbjct: 59  YHCFGCGAHGNAIGFVMEYDGLEFPDAIEELASMQGMQVPREQSIGGSANSQPAVSKDLF 118

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            L+     F+  +LK+        YL  RG+    ++ F +GYAP     +R        
Sbjct: 119 ELMNQIARFYESNLKS--APHAVEYLKGRGLTGEVVKRFNIGYAPSDWDQVRRRFGASRD 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            E+ +I  G+LI  DN   SYDRFR+R++FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 177 HEQLLISGGMLITRDNGPGSYDRFRDRIMFPIRDKRGRVIGFGGRVL-GDGTPKYLNSPE 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG+ L+  +      +   R          I++VEGYMDV++L Q  +   V++L
Sbjct: 236 TPIFHKGRELFGLYEVKQAHKDPRR----------ILVVEGYMDVVALGQYDIDYAVAAL 285

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T   +  L++ +  +V C+DGD+ G  AA++A+D  L HL  G  + FV L  GED
Sbjct: 286 GTATTSDHIHTLFRTTAEVVCCYDGDNAGREAAWRALDNALPHLQDGRELKFVFLPDGED 345

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK  FE L+ E+ P  D +++R   + + +    + E+       I  + + 
Sbjct: 346 PDSLVRQIGKEGFEALLDEAQPFADFMFERLGRDAALSGEAGKFEVANKAAELIRRVPEG 405

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R      +   ++    K             K   ++ +      L            
Sbjct: 406 FTREGLITRLSSMMRWGENKQRIAELFARNSQPKAEVNKPKAAKLTPL------------ 453

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                    L  ++ +P +  E              ++ L   L    + Q       + 
Sbjct: 454 ------RRALALMVQYPTVTAELPPMPELAGLRVQGIKFLLQ-LHQQILAQPGITTGILL 506

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           +       GE+L QL        +        + +++  +   +      + L ++ EE+
Sbjct: 507 EHWRGTKEGEILAQLAMHDLFEEIKLDQEPDILGELQDTFVGFIN-----QFLKQRIEEL 561

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + ++AQ      +E+T  L+ ++ EV I+  
Sbjct: 562 QAKVAQ--EGLSSEETQELMMLIREVQIEKR 590


>gi|256832746|ref|YP_003161473.1| DNA primase [Jonesia denitrificans DSM 20603]
 gi|256686277|gb|ACV09170.1| DNA primase [Jonesia denitrificans DSM 20603]
          Length = 634

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/655 (22%), Positives = 254/655 (38%), Gaps = 47/655 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             RD +  +     I +++G++V           G     CPFHDEK+PSFH     G Y
Sbjct: 5   IKRDDVDAVRERAKIDDIVGEHVTLKPAG----VGSMKGLCPFHDEKSPSFHVRPHVGRY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
           +CF C   GD +SF+  + G +F E+V+ LA   G+ L   +    + E    +  L+  
Sbjct: 61  HCFGCGEGGDVISFIQKVDGLTFTEAVEYLAGRVGLTLRYEEGSERRGEEPSRRARLLAA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             +A  ++   L ++       +L +R         F +GYAP     L   LR KGF+ 
Sbjct: 121 HRIAAAYYQEQLMSSEAATARQFLADRSFSRDDAAHFGVGYAPKGWDHLLTVLRSKGFTT 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
           E+I   GL+  G      YDRFR RL++PIR   G+VI FG R L   +   KYLN+PET
Sbjct: 181 EEIQGTGLMSSGQRGM--YDRFRGRLMWPIRDVTGEVIGFGARRLYDDDQGPKYLNTPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            L+ K + LY    A   + K  R          +++VEGY DV++   +GV   V++ G
Sbjct: 239 SLYRKSQVLYGIDLAKRDIAKEKR----------VVVVEGYTDVMAAHLSGVTTAVATCG 288

Query: 300 TALTEYQLRLLWK------------------LSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
           TA     ++ + +                  +   I+  FDGD  G +AA +A D     
Sbjct: 289 TAFGVDHVKFVRRLLGDTHAGGGVRLASGGSMGGEIIFTFDGDAAGRKAAMRAFDEEQRF 348

Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER 401
           L    +    +   G DP    +  G  A   L+   +PL + + +   E    +T + R
Sbjct: 349 LA---QTFVAVQPDGLDPCELRQQRGPAAVADLVNRRVPLFEFVLRTTLEAFPLHTAEGR 405

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
                     +  I+D  LR  YS+ +   L              GR  + +        
Sbjct: 406 VGALRQCAPVVASIRDAALRPEYSRVLAGWLGMDLDVVRQAVQRAGRSSRSSGGEPSDAQ 465

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWS 520
            ++ L          S   +  E   L  ++  P  +    +  L    +     + ++ 
Sbjct: 466 TTEAL--DGAPAPHASDPVARLERQTLEVMLQQPHEVPGAVFDALPAQAFAVPAWRAVFD 523

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            + +            +     E         +   V +  +     +    +    Y Q
Sbjct: 524 AIRAAGGLTAAASLSAV--EWVEAVLEAAADPVRVLVNELSVAPLPEDRP--EAMPLYVQ 579

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +        ++RQ  +++ ++ ++    + E    + ++L ++  Q  Q+   E
Sbjct: 580 GIVRAFIDMGMTRQIGDVKSRLQRMDYASDPEAYQEVYTLLVDLEAQRRQLRDTE 634


>gi|323703333|ref|ZP_08114983.1| DNA primase [Desulfotomaculum nigrificans DSM 574]
 gi|323531696|gb|EGB21585.1| DNA primase [Desulfotomaculum nigrificans DSM 574]
          Length = 600

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 166/622 (26%), Positives = 278/622 (44%), Gaps = 41/622 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+D+     I  ++ +Y+  ++R  N     Y A CPFH EKTPSF+ N  K  
Sbjct: 4   RIPDEVIEDIRQKSDIVEVVSRYISLEKRGRN-----YVALCPFHQEKTPSFNINPEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRL 120
           ++CF C V G+   FL  + G SF E+V+   A  GV +P    P+   +   Q   +++
Sbjct: 59  FHCFGCGVGGEVFKFLMLMEGLSFPEAVRLQGAKVGVVIPEQLSPRDLARRSKQQRALQI 118

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             +A DF+   L      +   YL  R +     E F+LGYAP+   +L + L  KG S 
Sbjct: 119 YALARDFYRALLSRDVGAKAVEYLAGRNLSETVRETFQLGYAPEGWDNLTKFLTAKGISV 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++++ GL          YDRFRNR+IFPI   +G+V+ FGGRT+   +  KYLNSPE  
Sbjct: 179 DELVKLGLA-QSKAPGRCYDRFRNRIIFPIWDPQGRVVGFGGRTM-GDDLPKYLNSPEGE 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
            F+KG+ LY    A   ++             + +L+EGY+DV+S  Q GV N V+SLGT
Sbjct: 237 YFNKGQLLYGLHLARRGIR----------EQGYAVLMEGYVDVVSTYQHGVTNAVASLGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T  Q +LL   + ++V+ +D D  G++AA +A ++       G +V    +  G+DPD
Sbjct: 287 AFTREQGKLLMNYTHQVVIAYDSDSAGVKAAVRAAEI---LQELGGQVRIATIPEGKDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FI+ YG+  +  +I  ++ L+     +  +        E+ ++ + +   +  +     
Sbjct: 344 EFIQKYGQPGWADVIKNAVSLIQFKLLQAVKQY---GLREKKKILLEVLPNLAAVASPLE 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                Q     LQ  ++  + E   + R  +K     D+   +   + S+          
Sbjct: 401 LEEAIQQTATVLQVNWETVLAEVKKFKRNSRKTTPVWDKTVKNSHNIPSN-ANPAPKDAR 459

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           S  E  LL   + H  I+     EL    + N + Q ++S +              +  +
Sbjct: 460 SNAETGLLRLALEHQDIVNRIEAELGREFFQNPDYQVIFSAILEL---GAQVSAARLFDK 516

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L E     L + L +            E    ++ Q +   ++  KR      + EE+  
Sbjct: 517 LKEPQQKVLSELLVQ------------EIPGENLDQIFNDLVSTIKRASG-KARLEELLM 563

Query: 601 QIAQVTAKGEAEKTAILISILH 622
           Q+A     G  E+   L   ++
Sbjct: 564 QLAVAEKAGNTERVLRLRQEIN 585


>gi|261250213|ref|ZP_05942789.1| DNA primase [Vibrio orientalis CIP 102891]
 gi|260939329|gb|EEX95315.1| DNA primase [Vibrio orientalis CIP 102891]
          Length = 585

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 171/634 (26%), Positives = 294/634 (46%), Gaps = 63/634 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114
           +CF C V G+ + F+       F+E+++ LA+  G+ +P            + +   + +
Sbjct: 60  HCFGCGVHGNAIDFMMEYERLEFVEAIEELASFLGLDVPREQRQGGGVQSNQPKANSEQK 119

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            +L  L+     F+   LK  + K    YL +RG+    ++ F +GY  D    +R++  
Sbjct: 120 RNLYDLMGSIAQFYRDQLKQPKSKVAIDYLKDRGLSGQIVQKFGIGYVADEWDLVRKNFG 179

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           Q   ++E ++  G+LI+ D     YDRFR R++FPIR  RG+VI FGGR L    + KYL
Sbjct: 180 QAPQTQEMLVSGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKYL 237

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKGK LY  +  +   ++  +          +++VEGYMDV++L Q GV   
Sbjct: 238 NSPETPIFHKGKELYGLYEVMQAYREPPK----------VLVVEGYMDVVALAQYGVDYS 287

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGT+ T   ++LL++ +  +V C+DGD  G  AA++A++  L +L  GN + F+ L 
Sbjct: 288 VASLGTSTTGDHIQLLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLP 347

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCI 412
            GEDPDS++R +GK AFE+ I ++ PL   L+    E    N    + ++ L  H    I
Sbjct: 348 DGEDPDSYVRKHGKEAFEQQIEQATPLSSYLFDNLIEIHQLNLGGNEGKSALRAHASVLI 407

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           + I D      Y Q + ++L       + E +G+    ++  + + +  P          
Sbjct: 408 DKIPDP-----YFQELLEKL-------LDERTGFDNQLRQPRKKQSESRPQPHKEIKRTP 455

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
                         ++  LI +P+  Q      +        L  L+  +     +    
Sbjct: 456 M-----------REVIALLIQNPSYAQMVPDLSSVRELTVPGL-SLFVEVLEYCHQHPNI 503

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              ++ +         LL +L              +  +  + +   Q +          
Sbjct: 504 TTGQLIEHWRNSSHEALLSRLAGWEIPLD-EDNEQDIFLDSLDKILAQCV---------E 553

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           +Q E ++ +  + +     E+   L++++ ++  
Sbjct: 554 KQIENLQAK--ERSVGLSTEERRELLALMLDLKA 585


>gi|320157474|ref|YP_004189853.1| DNA primase [Vibrio vulnificus MO6-24/O]
 gi|319932786|gb|ADV87650.1| DNA primase [Vibrio vulnificus MO6-24/O]
          Length = 587

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 164/632 (25%), Positives = 290/632 (45%), Gaps = 57/632 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114
           +CF C   G+ + F+       F+E+++ LA+  G+ +P              +     +
Sbjct: 60  HCFGCGAHGNAIDFMMEFERLEFVEAIEELASYLGLDVPREQRSTNTKFSQAPQASSSQK 119

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  L+   + F+ + LK +  K    YL  RG+    ++ F +GY  D    +R++  
Sbjct: 120 RSLYDLMASISQFYRNQLKLSSGKNAIDYLKNRGLSGEIVQKFGIGYIADEWDLVRKNFG 179

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           Q   ++E ++  G+LI+ +     YDRFR R++FPIR  RG+VI FGGR L    + KYL
Sbjct: 180 QHPEAQEMLVAGGMLIENEKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKYL 237

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV   
Sbjct: 238 NSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDYS 287

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGT+ T   L++L++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L 
Sbjct: 288 VASLGTSTTGDHLQVLFRQTSTVVCCYDGDRAGREAAWRAMENALPYLNDGRQLKFMFLP 347

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            GEDPDS+IR +GK  FE+ +  ++PL + ++    +    ++ +  A+L       I+ 
Sbjct: 348 DGEDPDSYIRQFGKAQFEQQVANAMPLSEFMFSSLAQQVDMSSKEGMAKLTTLAVPLIDK 407

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           +    LR Y  + +  RL  + ++ + +         +  +   +  P + L ++ +   
Sbjct: 408 VPGGTLRLYLRELLGRRLGLVDERQLQQLID------RQGQTDKKPQPHRELKRTPM--- 458

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                       ++  LI  P+  Q               L  L   +      +     
Sbjct: 459 ----------REVVALLIQRPSFSQLVPDLTPVKHLTIPGL-SLLIEVLERCQARPNITT 507

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            ++ +        +LL +L              +  +  + +   Q +          +Q
Sbjct: 508 GQLLESWRGSQNEQLLSRLAGWEIPLDD-DNEEDIFLDSLDKILAQCV---------EKQ 557

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            E ++ +   +    +  +   L++++ ++  
Sbjct: 558 IENLQAKDRSIGLSAD--ERRELMALMLDLKA 587


>gi|323493626|ref|ZP_08098747.1| DNA primase [Vibrio brasiliensis LMG 20546]
 gi|323312149|gb|EGA65292.1| DNA primase [Vibrio brasiliensis LMG 20546]
          Length = 585

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/634 (26%), Positives = 294/634 (46%), Gaps = 63/634 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114
           +CF C V G+ + F+       F+E+++ LA+  G+ +P            + +   + +
Sbjct: 60  HCFGCGVHGNAIDFMMEYERLDFVEAIEELASSLGLDVPREQRQGGGFQSNQPQANSEQK 119

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            +L  ++     F+   LK  + K    YL +RG+    ++ F +GY  D    +R++  
Sbjct: 120 RNLYDIMGSIAQFYRDQLKQPKSKVAIDYLKDRGLSGQIVQKFGIGYVADEWDLVRKNFG 179

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           Q   +++ +I  G+LI+ DN    YDRFR R++FPIR  RG+VI FGGR +    + KYL
Sbjct: 180 QTPQTQDMLISGGMLIENDNGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVI-GDGTPKYL 237

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKGK LY  +  +   ++  +          I++VEGYMDV++L Q GV   
Sbjct: 238 NSPETPIFHKGKELYGLYEVMQAHREPSK----------ILVVEGYMDVVALAQYGVDYS 287

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGT+ T   ++LL++ +  +V C+DGD  G  AA++A++  L +L  GN + F+ L 
Sbjct: 288 VASLGTSTTGDHIQLLFRQTNTVVCCYDGDRAGKDAAWRALENALQYLKTGNTLKFLFLP 347

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCI 412
            GEDPDSFIR +GK AFE+ + ++ PL   L+    E    N  + + ++ L  H    I
Sbjct: 348 DGEDPDSFIRKHGKDAFEQEVEQATPLSSYLFDNLIELHQLNLGSNEGKSALRAHASALI 407

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           + I D      Y Q + ++L       + E +G+    ++  +  +   P          
Sbjct: 408 DKIPDP-----YFQELLEKL-------LDERTGFDNRLRQARKKTNDSRPQPHKEIKRTP 455

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
                         ++  LI +P+  +               L  L+  +     +    
Sbjct: 456 M-----------REVIALLIQNPSYAEMVPDLSTVRELTVPGL-SLFVEVLEYCHQHPNI 503

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              ++ +         LL +L              +  +  + +   Q +          
Sbjct: 504 TTGQLLECWRNTSHEALLSRLAGWEIPLD-EDNEKDIFLDSLDKILAQCV---------E 553

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           +Q E ++ +  + +     E+   L++++ ++  
Sbjct: 554 KQIENLQAK--ERSVGLSTEERRELLALMLDLKA 585


>gi|330812145|ref|YP_004356607.1| DNA primase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380253|gb|AEA71603.1| DNA primase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 652

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/671 (26%), Positives = 295/671 (43%), Gaps = 81/671 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   +   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRLQMKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P  +   + + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEELAKAAGMEIPREESGRQHKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A DF+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LTAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  +I+AGLLI+   +   YDRFR+R++FPIR +RG++IAFGGR L   +  KYLNSPET
Sbjct: 180 QRAMIDAGLLIENAETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A    +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLYEARKNNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  ++ L+++ P ++ CFDGD  G  AA++A++  L  L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHMKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF   +   + PL D  +++ TE     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------- 441
            LR    Q + +      +                                         
Sbjct: 409 NLRTLMRQRLTEITGLNSEAVNQLVHSAPQEAPPAYDPGVDYDAMPDFADYHQPQQDYAP 468

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAIL 498
           +     +      +  D+K   +   +    + +  + P+  E    A L TL++HP + 
Sbjct: 469 QQEWTPKKPGSGGKKWDKKPWDKNGKRGDRDQPRAPRVPAAVEPPTLAALRTLLHHPQLA 528

Query: 499 QEQYQELADIRYDNNELQ--KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           ++         +   +    +L   L     +       ++  R      G LLK L  +
Sbjct: 529 EKVEDA---GHFAAEDHSNTQLLVALLEAVQKNPKLNSFQLIARWHGTEQGRLLKALAEK 585

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                 W    +            +L+  +R R L +   +  +          +E T+ 
Sbjct: 586 E-----WLIEGDNLEQQFFDTIT-SLSARQRERNLEQLLRKARQ----------SELTSE 629

Query: 617 LISILHEVHIQ 627
             + L ++  +
Sbjct: 630 EKNQLRDLLSR 640


>gi|37678746|ref|NP_933355.1| DNA primase [Vibrio vulnificus YJ016]
 gi|37197487|dbj|BAC93326.1| DNA primase [Vibrio vulnificus YJ016]
          Length = 598

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/632 (25%), Positives = 290/632 (45%), Gaps = 57/632 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 16  IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 70

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114
           +CF C   G+ + F+       F+E+++ LA+  G+ +P              +     +
Sbjct: 71  HCFGCGAHGNAIDFMMEFERLEFVEAIEELASYLGLDVPREQRSTNTKFSQAPQASSSQK 130

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  L+   + F+ + LK +  K    YL  RG+    ++ F +GY  D    +R++  
Sbjct: 131 RSLYDLMASISQFYRNQLKLSSGKIAIDYLKNRGLSGEIVQKFGIGYIADEWDLVRKNFG 190

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           Q   ++E ++  G+LI+ +     YDRFR R++FPIR  RG+VI FGGR L    + KYL
Sbjct: 191 QHPEAQEMLVAGGMLIENEKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKYL 248

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV   
Sbjct: 249 NSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDYS 298

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGT+ T   L++L++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L 
Sbjct: 299 VASLGTSTTGDHLQVLFRQTSTVVCCYDGDRAGREAAWRAMENALPYLNDGRQLKFMFLP 358

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            GEDPDS+IR +GK  FE+ +  ++PL + ++    +    ++ +  A+L       I+ 
Sbjct: 359 DGEDPDSYIRQFGKAQFEQQVTNAMPLSEFMFSSLAQQVDMSSKEGMAKLTTLAVPLIDK 418

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           +    LR Y  + +  RL  + ++ + +         +  +   +  P + L ++ +   
Sbjct: 419 VPGGTLRLYLRELLGRRLGLVDERQLQQLID------RQGQTDKKPQPHRELKRTPM--- 469

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                       ++  LI  P+  Q               L  L   +      +     
Sbjct: 470 ----------REVVALLIQRPSFSQLVPDLTPVKHLTIPGL-SLLIEVLERCQARPNITT 518

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            ++ +        +LL +L              +  +  + +   Q +          +Q
Sbjct: 519 GQLLESWRGSQNEQLLSRLAGWEIPLDD-DNEEDIFLDSLDKILAQCV---------EKQ 568

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            E ++ +   +    +  +   L++++ ++  
Sbjct: 569 IENLQAKDRSIGLSAD--ERRELMALMLDLKA 598


>gi|238060519|ref|ZP_04605228.1| DNA primase [Micromonospora sp. ATCC 39149]
 gi|237882330|gb|EEP71158.1| DNA primase [Micromonospora sp. ATCC 39149]
          Length = 652

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 146/649 (22%), Positives = 251/649 (38%), Gaps = 45/649 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I+ +I   V           G+    CPFHDEK+PSF+ + ++  
Sbjct: 32  RIRDEDIALVRERTSIAEVISDTVTLRSAG----GGNLKGLCPFHDEKSPSFNVSPARNV 87

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK------IEKKEKIQT 115
           +YCF C   GD + FL      SF+ESV+RLAA AG+ L  V+           ++  + 
Sbjct: 88  WYCFGCGAGGDAIKFLMDAEHLSFVESVERLAARAGIQLRYVENDQATPRAARPQQGQRQ 147

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L+     A +F+   L  A  +    +L +RG D  A + +  G+APD+   L +HLRQ
Sbjct: 148 RLVAAHAAAVEFYQAQLTTAGARPAREFLAKRGFDRAAAQRYGCGFAPDAWDLLTKHLRQ 207

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYL 234
           +GF+ ++++ AGL     +  T  DRFR RL++PIR   G  I FG R L   +   KYL
Sbjct: 208 QGFTHDELVTAGLSRPSRSG-TLIDRFRRRLMWPIRDITGDPIGFGARRLFDDDDGPKYL 266

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+PET ++ K   LY    A   + K  +          +++VEGY DV++   A V   
Sbjct: 267 NTPETPIYKKSHVLYGIDQAKREIAKQGK----------VVVVEGYTDVMACHLADVPTA 316

Query: 295 VSSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           V++ GTA     + +L +       ++  I+  FDGD  G +AA +A D     +    R
Sbjct: 317 VATCGTAFGADHISVLRRLLLDTDDVAGEIIFTFDGDAAGQKAALRAFDDDQRFVG---R 373

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
               +     DP       G  A   L+    PLVD   +        +T D R E    
Sbjct: 374 TFIAVSPDNMDPCDLRLAKGDLAVRDLVARREPLVDFALRHVINRYDLDTVDGRVEAMRR 433

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
               +  IKD++ R  Y + +   L    +                       G +    
Sbjct: 434 AAPIVAKIKDREKRPEYVRKLAGDLGMEIEPVQRAVLAAASGQPAG-------GTASAPA 486

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           +++          SL E   L   +  P +    +  +    Y +     +   + +   
Sbjct: 487 RAARPAPGADSPMSLVEREALKLALQEPVLAGPMFDAVDAAAYRHPVHVAVREAIAAAGG 546

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                      + + +       + L   V +  +     +         Y        +
Sbjct: 547 AAAATQGAVWVEAVRDACADLAAQAL---VGELAVEPLRIDGEPDP---RYVSVTIARLQ 600

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           +  ++ +  +++ +I ++      ++   L   L  +      +  Q A
Sbjct: 601 WGSVTGRVRDLKSKIQRINPVSNKDEYFALFGELLSLEQHARALREQAA 649


>gi|332086725|gb|EGI91865.1| DNA primase [Shigella boydii 5216-82]
          Length = 581

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SLK         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLKQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|324997357|ref|ZP_08118469.1| DNA primase [Pseudonocardia sp. P1]
          Length = 621

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 144/646 (22%), Positives = 261/646 (40%), Gaps = 43/646 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I ++   + +  ++ +YV   R       G     CPFHDEKTPSF+   S G 
Sbjct: 4   RIRDADITEVRNRVRVEEIVEEYVALRRAGA----GSLKGLCPFHDEKTPSFNVRPSHGT 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   G  + F+  +    F E+V+RLA   GV L         +     ++ L+ 
Sbjct: 60  FHCFGCGEHGSVIDFVMKMEVIGFPEAVERLADRCGVRLTYEGGGSSVQRDRGTRSRLLE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +   A +F+   L+    +    +L ERG D  A E F  GYAP    ++ +HL  +G+ 
Sbjct: 120 INRKAAEFYAEQLRTPAGRAAMQFLSERGFDQAAAEKFGCGYAPAGWDTVTKHLLGQGYQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSP 237
            +++I++G+  +      + DRF  RL++PIR   G V+ FG R L   +    KYLN+ 
Sbjct: 180 LDELIKSGIAKE--GRRGAIDRFHRRLLWPIRDLAGDVVGFGARRLFDDDGIEAKYLNTS 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++ K   L+    A   + KS            +++VEGY DV+++  AGV   V+S
Sbjct: 238 ETPVYRKTHVLFGLDQAKREIAKS----------RQVVVVEGYTDVMAMHLAGVPTAVAS 287

Query: 298 LGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA     + ++ +           ++  FDGDD G +AA KA +          +   
Sbjct: 288 CGTAFGSEHISVIRRLIGDDSFDRGEVIFTFDGDDAGQKAAQKAFEGDQSFAT---QTYV 344

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            + + G+DP      +G  A + L+    PL +   + E  N    T + R         
Sbjct: 345 AIAADGQDPCELRHNHGDAAVKDLVARREPLFEFAIRTELRNHRLETAEGRVAALQQTVP 404

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  IK + LR  Y++ +   +       +              R R          ++ 
Sbjct: 405 IVAKIKREDLRDEYARRLAGWVGWDDIAVVVRRVRETAGGPAEGRSR---------RRAP 455

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
           L   K        +   L   +  P ++   + EL +  + + +   +   +        
Sbjct: 456 LPAPKRDDTQLHLQREALKAALQIPGVVGPGFDELPEAGFTHPQFAAVQRAILGAGGVGA 515

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                E    +      + +K+L  ++   GL     + N  ++R  Y   +    R  L
Sbjct: 516 GLEGPEWLDAVVAEIATDDVKRLVSELAVEGLE--LPKRNTDELR--YVNGVLAGVRLGL 571

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           + R+  +++ Q+ +  ++ + ++   L  +L  +     Q+  Q A
Sbjct: 572 VEREIADLKSQLQRTNSETDHDEYMDLFGVLVPLEQYKIQLREQAA 617


>gi|103486469|ref|YP_616030.1| DNA primase [Sphingopyxis alaskensis RB2256]
 gi|98976546|gb|ABF52697.1| DNA primase [Sphingopyxis alaskensis RB2256]
          Length = 625

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 199/638 (31%), Positives = 309/638 (48%), Gaps = 26/638 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M     ++ +L   I +S LIG+ V   R        +Y ACCPFH+EKTPSF  ND KG
Sbjct: 1   MTLTPQWLDELRSRITLSTLIGRTVKITRAGR-----EYKACCPFHNEKTPSFTINDEKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF C   GD + +++   G SF+++V+ LAA AG+ +P  DP+  KK + Q  L  +
Sbjct: 56  FYHCFGCGAHGDAIRWMTDQRGLSFMDAVKELAAEAGMEVPAPDPRAAKKAEEQASLRDV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           ++ A ++F   L ++       YL +RGI     + F  G APDSR +L+E L  K F  
Sbjct: 116 MQAAAEWFAQQLGSSNGAPAREYLAKRGISEATRKAFGFGLAPDSRSALKEAL--KTFPT 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             ++EAG+LI   +    YDRFR RL+ PIR +RG+VIAFGGR L      KYLNSP+T 
Sbjct: 174 AMLVEAGMLI-AVDDKEPYDRFRGRLMIPIRDARGRVIAFGGRIL-GDGEPKYLNSPDTP 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+ LYN   A    +++ R          I++VEGYMDV++L +AG+ + V+ LGT
Sbjct: 232 LFDKGRTLYNLDKASPASRRTNR----------IVVVEGYMDVIALAEAGITDAVAPLGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL +LW++ P  +LCFDGD  G +AA +A    L  L PG  + F  L  G+DPD
Sbjct: 282 ALTENQLAMLWRMVPVPILCFDGDSAGQKAAMRAAMRALPLLRPGFSLAFATLPAGQDPD 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G   F  ++ ++ PLV+ LW  E       TP+ERA L+  L    + I+D  +
Sbjct: 342 DLVRAKGAEGFAAILEDAQPLVERLWAHEVAAGPLATPEERAALKTRLLAHADVIEDADV 401

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK- 479
           R++Y +A R++L  LF +          +  +  R   +  P  RL         L +  
Sbjct: 402 RHHYREAFREKLDALFARAPAGRGPRVPWAPQPGRGGRRFAPDPRLQPPGEETRALGQTG 461

Query: 480 -PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                 AALL  L+ +P  ++   + L  +   ++   +L   +      ++    E + 
Sbjct: 462 IAGPLAAALLGGLLRYPQAIRRNEEALCRLAIPDSGDAELLGLMLDIANAREGLDCEGLL 521

Query: 539 QRLC-----ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             L       R    L         +  L     +       +   + + +      +  
Sbjct: 522 AILEPMKVYNRAMTLLRADGMHFSFNRRLEGEEVDKAREIALRDLDEYIGVLVTQPEIRA 581

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +  E      +        +   L ++  ++  ++  +
Sbjct: 582 RLAEATADYMRTMDDEGHARQQKLRAMDEDLTRRLAAL 619


>gi|295110290|emb|CBL24243.1| DNA primase [Ruminococcus obeum A2-162]
          Length = 600

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 163/611 (26%), Positives = 267/611 (43%), Gaps = 35/611 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  D I+++     I +++ QYV   RR +      Y+  CPFH+EKTPSF     K 
Sbjct: 1   MRYSDDIIEEVRQKNDIVDVVSQYVRLTRRGS-----TYFGLCPFHNEKTPSFSVTPGKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+  +F+      +F E+++ LA  AGV LP      ++ +K + + +L+
Sbjct: 56  MYYCFGCGAGGNVYNFIMEYENYTFGEALKHLADRAGVELPKIEYSREVREKAEQRAELL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + + A  ++++ L+    K  + YL  RG+    +  F LGY+      L   L+ KG+
Sbjct: 116 EINKQAAQYYYYQLRTEGGKIGYQYLSGRGLSEETMRKFGLGYSDKFGGGLYTFLKSKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S+E++ E+GL          YD+F NR+IFPI     +VI FGGR +      KYLNSPE
Sbjct: 176 SDERLRESGLFNVD-ERHGMYDKFWNRVIFPIMDVNNRVIGFGGRVM-GDGKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K +NLY    A    +K            ++IL EGYMDV+S+ QAG  N V+SL
Sbjct: 234 TKIFDKSRNLYGLNIARTTRKK------------YLILCEGYMDVISMHQAGFTNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     LL + +  ++L +D D+ G+RAA + I +       G     V L   +D
Sbjct: 282 GTALTSGHASLLKRYTQEVLLLYDSDEAGIRAALRGIPI---LRDAGVSSRVVNLKPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AFE+ + ++                 + P  +          +  +KD+
Sbjct: 339 PDEFIKNMGAEAFEERLGQASDSFMFRVSIAESEFPMDEPQGQNRFFERCAELLLELKDE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +AI  + +  +     +     R      +    +  +Q        K K   
Sbjct: 399 LERNLYIEAIVKKYRGQYGVSAEDLRK--RVNTLALKGTPAENRTQPKTSGGQNKKKKES 456

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  +L  L+ +P I  +  Q L    +     +++   LF    E+    P ++ 
Sbjct: 457 ASDQAQKLMLTWLVTYPGIFDKVAQYLNAEDFIVPLYKEVAQMLFRQREEEGQVNPAKLL 516

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR---------FR 589
               +      +  L               A    + +   ++LA   R          +
Sbjct: 517 NSFTDSEEQREVASLFNATIHLETQQEQDRAFADTLLRIKAESLAEKNRNLDPTDMAGLQ 576

Query: 590 LLSRQKEEIEK 600
            + R+K+E+E+
Sbjct: 577 QILREKKELEE 587


>gi|331659357|ref|ZP_08360299.1| DNA primase [Escherichia coli TA206]
 gi|331053939|gb|EGI25968.1| DNA primase [Escherichia coli TA206]
          Length = 581

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 177/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGSSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +++AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLVDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|257483093|ref|ZP_05637134.1| DNA primase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330891183|gb|EGH23844.1| DNA primase [Pseudomonas syringae pv. mori str. 301020]
 gi|330985809|gb|EGH83912.1| DNA primase [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331011673|gb|EGH91729.1| DNA primase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 651

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 180/668 (26%), Positives = 294/668 (44%), Gaps = 76/668 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF+  +   + PL D  +++ T+     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442
            LR    Q + +      +                                        +
Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPVDAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499
                +      + +       +  +    + +  + P+  E    A L TL++HP + +
Sbjct: 469 QEWTPKKTGGQNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +  +  +    ++    +L   L     +       ++  R      G LL+ L  +   
Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
              W    +            +L+  +R R L     +  +           E +A    
Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631

Query: 620 ILHEVHIQ 627
            L E+  +
Sbjct: 632 QLRELLNR 639


>gi|291522136|emb|CBK80429.1| DNA primase [Coprococcus catus GD/7]
          Length = 593

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/606 (24%), Positives = 270/606 (44%), Gaps = 26/606 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP + I+++     I ++IG YV   ++ +      Y+  CPFH+EK+PSF  + +K 
Sbjct: 1   MYYPDEVIEEVRSSNNIVDIIGGYVRLQKKGS-----SYFGLCPFHNEKSPSFSVSPNKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118
            YYCF C   G+  +F+      +F E+V+ LA  AG+ LP      + +++   +  L+
Sbjct: 56  MYYCFGCGAGGNVFTFIMEYENQTFPEAVKILADRAGIALPEAELTEEQKRERNKRQLLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + + A ++F++ L   + ++   YL+ R +       F LGYA      L  +L++KG+
Sbjct: 116 EINKTAANYFYYLLNGDQGQQAREYLENRRMSKETQIHFGLGYASKYSNDLYLYLKKKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            ++ + E GLL   D    ++D+F NR++FPI     +VI FGGR +    + KYLNSPE
Sbjct: 176 QDQILKETGLLT-YDEKRGAHDKFWNRVMFPIMDVNNRVIGFGGRVM-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T+LF K +NLY    A              +   ++I+ EGYMDV+++ QAG  N V+SL
Sbjct: 234 TMLFDKSRNLYGLNYAR------------TSRKPYMIICEGYMDVIAMHQAGFTNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T     LL + +  + L +D D  G +AA +AI +       G  V  + +   +D
Sbjct: 282 GTAFTTQHSVLLKRYTQEVRLAYDSDGAGQKAALRAIPI---LKSAGINVRVIHMDPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AF++ I  +            +N   + P+ RA     +   +     +
Sbjct: 339 PDEFIKNLGTEAFQERIDAAESSFMFEISVLEKNYKQSDPEGRASFMKAMARRLLEFPQE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y  AI  R     ++     + +G    +           +R    +  + +   
Sbjct: 399 LERNIYIDAIAGRYGIASEELKRMVNSFGASMSREQVEAAIYQQQEREEMPAKKRVEKED 458

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +   L  LI  P+I  +    + +  +       + + +F +       +P  I 
Sbjct: 459 SVLTAQKFFLTWLIEEPSIYDKTKDYINEDDFVEPLYHHVAALVFEELRATGQVMPARIL 518

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            +  +    +    L           A  E  + +  +  ++  +L  + R + R+  ++
Sbjct: 519 NQFEDVEEQKTAASLFNTRLKTDDDPAVREKALNETVKRIKK-NSLELKSRSV-REIADL 576

Query: 599 EKQIAQ 604
           +K I +
Sbjct: 577 QKIIKE 582


>gi|330955105|gb|EGH55365.1| DNA primase [Pseudomonas syringae Cit 7]
          Length = 651

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 180/668 (26%), Positives = 294/668 (44%), Gaps = 76/668 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LNAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF+  +   + PL D  +++ T+     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442
            LR    Q + +      +                                        +
Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPAEAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499
                +      + +       +  +    + +  + P+  E    A L TL++HP + +
Sbjct: 469 QEWTQKKTGGPNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +  +  +    ++    +L   L     +       ++  R      G LL+ L  +   
Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
              W    +            +L+  +R R L     +  +           E +A    
Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631

Query: 620 ILHEVHIQ 627
            L E+  +
Sbjct: 632 QLRELLNR 639


>gi|239917165|ref|YP_002956723.1| DNA primase [Micrococcus luteus NCTC 2665]
 gi|281414365|ref|ZP_06246107.1| DNA primase [Micrococcus luteus NCTC 2665]
 gi|239838372|gb|ACS30169.1| DNA primase [Micrococcus luteus NCTC 2665]
          Length = 636

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 166/657 (25%), Positives = 270/657 (41%), Gaps = 53/657 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  I  +     +  ++ ++V           G +   CPFHDE+TPSFH     G Y
Sbjct: 5   IVRKDIDLVRERTDLKAVVEEFVTLRSAG----VGSFKGLCPFHDERTPSFHVRPGVGTY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLIR 119
           +CF C   GD +SFL  L   +F+E+V+RLA+  GV L   D      + +   +  L  
Sbjct: 61  HCFGCGAHGDVISFLMELEHTTFMETVERLASRVGVELHYEDGGTGPDKAETGRRRRLFE 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             +VA +FF  +L +   +    +L +RG        F LGYAP     L +HLRQ+GF 
Sbjct: 121 ANKVADEFFRRALGSPEAQAARDFLTQRGFTQEHAAQFGLGYAPQGWSHLLDHLRQRGFR 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           +E++  +GL+ +G      YDRFR RL++PIR   G  I FG R L   +   KYLN+PE
Sbjct: 181 DEELRASGLVSEGQR--GLYDRFRGRLLWPIRDMTGATIGFGARKLYDDDPGPKYLNTPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A   + K             ++LVEGY DV++   AGV   V++ 
Sbjct: 239 TPLYKKSQVLYGIDLAKRTIAK----------ERQLVLVEGYTDVMAAHLAGVGTAVATC 288

Query: 299 GTALTEYQLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           GTA     +++  +L         ++  FDGD+ G +AA KA D     L    +    +
Sbjct: 289 GTAFGADHIKVARRLISDDGTGGEVIFTFDGDEAGQKAALKAFDEDHRFLA---KTFVAV 345

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP       G  A   LI    PL +   +   ++   NT + RA    H    +
Sbjct: 346 EPSGMDPCDLRMQKGDEAVRALIASRRPLFEFAIRAGLKHYDLNTVEGRAGALRHAAPIV 405

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------ 460
             IKD  LR  Y + +   L           +  GR  ++      +             
Sbjct: 406 AGIKDAVLRPGYERELAGWLGLDPNAVHRAVAAAGRAPRRGPEPEARPTLASDGQAVGPT 465

Query: 461 ---GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL-QEQYQELADIRYDNNELQ 516
              G +       +V        + RE   L  ++ HP +L  EQ+  L   R+   +  
Sbjct: 466 GRHGEAAAPAPRIVVPVDPRDPVARRERESLEVVLQHPTLLSAEQWTALYAARFTVPQYA 525

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            +   +                QR  +     + +++   V +  +          DV +
Sbjct: 526 AVHQGVKVAGSAGATP------QRWVDAVRDAVPQEVAGVVSELAVRDL-PARTPEDVDR 578

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             +  +      +++ R KEE+  ++ ++  +G+  +   L S L E+  +   + +
Sbjct: 579 YCRDIMNRLFALQIVHR-KEELLGRLQRLGPEGDPAEFTRLNSELMELEARRRALRA 634


>gi|289649020|ref|ZP_06480363.1| DNA primase [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 651

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 180/668 (26%), Positives = 294/668 (44%), Gaps = 76/668 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-SDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF+  +   + PL D  +++ T+     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442
            LR    Q + +      +                                        +
Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPVDAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499
                +      + +       +  +    + +  + P+  E    A L TL++HP + +
Sbjct: 469 QEWTPKKTGGQNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +  +  +    ++    +L   L     +       ++  R      G LL+ L  +   
Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
              W    +            +L+  +R R L     +  +           E +A    
Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631

Query: 620 ILHEVHIQ 627
            L E+  +
Sbjct: 632 QLRELLNR 639


>gi|260775519|ref|ZP_05884416.1| DNA primase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608700|gb|EEX34865.1| DNA primase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 585

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/634 (27%), Positives = 293/634 (46%), Gaps = 63/634 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--------PKIEKKEKIQ 114
           +CF C   G+ + F+       F E+++ LA+  G+ +P            + +   + +
Sbjct: 60  HCFGCGAHGNAIDFMMEYERLEFPEAIEELASYLGIDVPREQRQGGRFPANQPQANTEQK 119

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            +L  L+     F+   LK +  K    YL ERG+    ++ F +GY  D    +R++  
Sbjct: 120 RNLYDLMTGIAQFYRDQLKLSTSKVAIDYLKERGLSGEIVQKFGIGYVADEWDLVRKNFG 179

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           Q+  +++ ++  G+LI+ D     YDRFR R++FPIR  RG+VI FGGR +    + KYL
Sbjct: 180 QQKQAQDMLVSGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVI-GDGTPKYL 237

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKGK LY  +      +              I++VEGYMDV++L Q GV   
Sbjct: 238 NSPETPIFHKGKELYGLYEVTQAYR----------EPPQILVVEGYMDVVALAQYGVDYS 287

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGT+ T   ++LL++ +  +V C+DGD  G  AA++A++  L +L  GN + F+ L 
Sbjct: 288 VASLGTSTTGDHIQLLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLP 347

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCI 412
            GEDPDS+IR YGK AFE+ + +++PL   L++   E    N  + + ++ L  H  + I
Sbjct: 348 DGEDPDSYIRKYGKDAFEQQMHQAIPLSRYLFENLIEIHQLNLGSNEGKSALRAHASSLI 407

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           N I D      Y Q + ++L       + E +G+    ++  R  ++  P          
Sbjct: 408 NKIPDP-----YFQELLEKL-------LDERTGFDNRLRQPRRKTNETRPQPHKELKRTP 455

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
                         ++  LI +P+  Q      +        L  L+  +          
Sbjct: 456 M-----------REVIALLIQNPSYAQMVPDLSSVKGLSVPGL-SLFVEVLEYCHHHPNV 503

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              ++ +         LL +L              +  +  + +   Q +          
Sbjct: 504 NTGQLTEHWRNTSHDALLSRLAGWEIPLD-EDNEQDIFLDSLDKILAQCV---------E 553

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           +Q E ++ +  + +     E+   L++++ ++  
Sbjct: 554 KQIENLQAK--ERSVGLSTEERRELLALMLDLKA 585


>gi|187730978|ref|YP_001881828.1| DNA primase [Shigella boydii CDC 3083-94]
 gi|187427970|gb|ACD07244.1| DNA primase [Shigella boydii CDC 3083-94]
          Length = 581

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDTRVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMLNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|330970855|gb|EGH70921.1| DNA primase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 651

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/668 (26%), Positives = 294/668 (44%), Gaps = 76/668 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A +F+  +LK+    K    YL  RG+       F LG+AP    ++ +HL      
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNMSKHLSSDSLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF+  +   + PL D  +++ T+     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442
            LR    Q + +      +                                        +
Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPVEAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499
                +      + +       +  +    + +  + P+  E    A L TL++HP + +
Sbjct: 469 QEWTQKKTGGPNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +  +  +    ++    +L   L     +       ++  R      G LL+ L  +   
Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
              W    +            +L+  +R R L     +  +           E +A    
Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631

Query: 620 ILHEVHIQ 627
            L E+  +
Sbjct: 632 QLRELLNR 639


>gi|330878418|gb|EGH12567.1| DNA primase [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|330963832|gb|EGH64092.1| DNA primase [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 652

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/669 (27%), Positives = 296/669 (44%), Gaps = 77/669 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YSACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A++F+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LNAASEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEAALPNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF+  +   + PL D  +++ T+     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGY-------------------------------- 446
            LR    Q + +      +                                         
Sbjct: 409 NLRILMRQRLSEITGLTGEAVSQLVQSAPADAPPSYDPYVDYDAMPDFADYQPQGGYEAQ 468

Query: 447 -----GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAIL 498
                 +    N +  D      +  +    + +  + P+  E    A L TL++HP + 
Sbjct: 469 QEWTPKKAGGPNQKKWDNNKSWGKKGKRQEFEPRTPRVPTAVEPPMQAALRTLLHHPELA 528

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           ++  +  +    ++    +L   L     +       ++  R      G LL+ L  +  
Sbjct: 529 EKV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE- 586

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
               W   T+            +L+  +R R L     +  +           E +A   
Sbjct: 587 ----WLIETDNLEQQFFDTIT-SLSARQRERSLDHLISKARQ----------TELSAEEK 631

Query: 619 SILHEVHIQ 627
             L E+  +
Sbjct: 632 IQLRELLNR 640


>gi|330980977|gb|EGH79080.1| DNA primase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 651

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 180/668 (26%), Positives = 294/668 (44%), Gaps = 76/668 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF+  +   + PL D  +++ T+     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442
            LR    Q + +      +                                        +
Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPAEAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499
                +      + +       +  +    + +  + P+  E    A L TL++HP + +
Sbjct: 469 QEWTQKKTGGPNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +  +  +    ++    +L   L     +       ++  R      G LL+ L  +   
Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
              W    +            +L+  +R R L     +  +           E +A    
Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631

Query: 620 ILHEVHIQ 627
            L E+  +
Sbjct: 632 QLRELLNR 639


>gi|289676147|ref|ZP_06497037.1| DNA primase [Pseudomonas syringae pv. syringae FF5]
          Length = 651

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 180/668 (26%), Positives = 294/668 (44%), Gaps = 76/668 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF+  +   + PL D  +++ T+     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442
            LR    Q + +      +                                        +
Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPAEAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499
                +      + +       +  +    + +  + P+  E    A L TL++HP + +
Sbjct: 469 QEWTQKKTGGPNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +  +  +    ++    +L   L     +       ++  R      G LL+ L  +   
Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
              W    +            +L+  +R R L     +  +           E +A    
Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631

Query: 620 ILHEVHIQ 627
            L E+  +
Sbjct: 632 QLRELLNR 639


>gi|300780731|ref|ZP_07090585.1| DNA primase [Corynebacterium genitalium ATCC 33030]
 gi|300532438|gb|EFK53499.1| DNA primase [Corynebacterium genitalium ATCC 33030]
          Length = 639

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/651 (19%), Positives = 251/651 (38%), Gaps = 44/651 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +     I++++G+YV                  PF DEKTPSFH   ++G+
Sbjct: 5   RIPDSDIEAIRERANIADIVGEYVQLKPAG----HDSLKGLSPFKDEKTPSFHVRPARGY 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118
           Y+CFS    GD  SF+  +   SF E+V+ +A   G  +         ++     +  L+
Sbjct: 61  YHCFSTGKGGDVFSFMMEMEQLSFPEAVEAVAEEIGYHINYQGGSTGARDVKPGTRARLL 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              + A +F+   L+    +    +L +RG D   I  F+ GYAPD   +L +HL +KGF
Sbjct: 121 AANKAAHEFYREQLETPEAEPGRRFLLDRGFDKDTIYHFECGYAPDGWDTLTKHLLRKGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
             +++ EAGL           D+FR RL++PI+   G VI FG R L   +++ KY+N+ 
Sbjct: 181 DAQELQEAGL--STMGRRGPIDKFRRRLLWPIKDVAGNVIGFGARKLFDDDNMGKYMNTQ 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T+L+HK K L+    A   +                ++VEGY DV+++  AG+   V++
Sbjct: 239 DTMLYHKSKVLFGLDLAKKNIA----------QGHQCVVVEGYTDVMAMHAAGITTAVAA 288

Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA  +  + ++             ++  FDGD+ G +AA +A +          +   
Sbjct: 289 CGTAFGKDHMSIIRRLMLDDNYFRGELIYTFDGDEAGQKAAMRAFEGDQQFTG---QSFV 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G +A   L+   +P+ + + +   ++ S +TP+ R +       
Sbjct: 346 AVAPEGMDPCDLRMAKGDSAVRNLVASRVPMFEFVIESLLKDYSLDTPEGRLQALRRTVP 405

Query: 411 CINHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
            +  I+D  L+  Y++ +   +      ++ ++   E         K +   +    +  
Sbjct: 406 VVAQIRDTPLQTEYARQLAGWVGWPDPNEVIRQVRQEAKNPSNKGNKRSAWENATPAASD 465

Query: 466 -----LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                    +             +   +   + +P      +  +    + +   + +  
Sbjct: 466 GGSGAPGAPAFQVPNPQDPRLWAQREAIKVALQYPEAAGSYFDGINPDAFTDPAYRAVRD 525

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +                +         +  ++        +     E         Y  
Sbjct: 526 AMAKVGGAAN----AGASESAGPAWIANVAAEMVDVTGRNFVSELAVEEIHAADPSAYAD 581

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           ++    +   +  Q  +++ Q+ ++    +      L S L  +     ++
Sbjct: 582 SVLSRLQEVRVGNQIAQLKSQLQRMRPSDDEMAYNALFSDLVALEQARREL 632


>gi|315645988|ref|ZP_07899109.1| DNA primase [Paenibacillus vortex V453]
 gi|315278749|gb|EFU42063.1| DNA primase [Paenibacillus vortex V453]
          Length = 605

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 154/631 (24%), Positives = 279/631 (44%), Gaps = 37/631 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           N P D I+++L    I + + +YV   ++            CPFH EKTPSF     +  
Sbjct: 7   NIPDDVIEEVLAKSDIVDTVSKYVHLTKQGK-----YLKGLCPFHSEKTPSFTVTPERQI 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-EKKEKIQTDLIRL 120
           +YC+ C   G+ + F   + G SF E+V+ +A    + LP         +   +  LI  
Sbjct: 62  FYCYGCGKGGNAIKFRMEIEGFSFPEAVKTMAEENDISLPEGQGVPVIPRNPEKERLIEA 121

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E++   +H  LKN         YL  RG++   I+ F++GYAPD   +L + L ++ F 
Sbjct: 122 NELSAKLYHFLLKNTEHGTEAMKYLRSRGMNDKVIDQFQIGYAPDRWDTLVQFLSKRSFD 181

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            +++ + GLL          DRFR R++FPI    G+VIAF GR L      KYLNSPET
Sbjct: 182 LKEMEKGGLLSARHEQEGYLDRFRGRIMFPIHDRNGKVIAFAGRIL-GDGQPKYLNSPET 240

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           +LF+K + LYN   A   ++K          S  I+L EGY DV+S  +AG+Q+ V+++G
Sbjct: 241 LLFNKSRILYNLHQAKTSIRK----------SRQILLFEGYGDVISSWEAGLQSGVATMG 290

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LTE Q+ ++  ++  +V+ +DGD  G+ AA K I +       G RV   L++ G DP
Sbjct: 291 TSLTENQVAIMKSMADEVVVIYDGDKAGMAAALKVIPM---LEGVGLRVRIALVNEGMDP 347

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +IR +G   F  ++  ++           +N      D +          I  +    
Sbjct: 348 DDYIRKFGAERFRHVVETAVSTTKFKLIYLKKNHILLEEDGKIAYAKEALPIIAVLNSST 407

Query: 420 LRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            R  Y + +   L   ++    +        +   +N  +++++  + R  +       L
Sbjct: 408 EREVYLRELSSELHLSYESLKQDCNLLRQSMQKKMENGDNKEKRWNNGRHKKGRQSAPTL 467

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++      +     L +  ++  +   + ++L++ + + K      
Sbjct: 468 LPAYHAAERRLLSLMLQDAEAARYVGDRLGE-AFNIEDHAAIAAYLYAFYAQGKSPDISR 526

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
               L +        +L+  V    +  A  E N+  +    ++ L   ++     R+ +
Sbjct: 527 FMSSLQD-------DRLEMTVSSIMMMEAPAEWNVQVLDDCIREVLKFPQQ-----REID 574

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           + ++++ +    G+  + A + S +  +  Q
Sbjct: 575 QKKEEMIKAERSGDFMRAAQIASEIIALERQ 605


>gi|292486904|ref|YP_003529774.1| DNA primase [Erwinia amylovora CFBP1430]
 gi|292900701|ref|YP_003540070.1| DNA primase [Erwinia amylovora ATCC 49946]
 gi|291200549|emb|CBJ47678.1| DNA primase [Erwinia amylovora ATCC 49946]
 gi|291552321|emb|CBA19365.1| DNA primase [Erwinia amylovora CFBP1430]
 gi|312170974|emb|CBX79233.1| DNA primase [Erwinia amylovora ATCC BAA-2158]
          Length = 581

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/629 (28%), Positives = 278/629 (44%), Gaps = 54/629 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATLYGLEVPYESGSGPSQLERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    DFF  SL          YL +RG+    ++ F +G+AP    +  +        
Sbjct: 119 LMTGLRDFFQQSLTQGPSAGARDYLAQRGLSDEVVKHFSIGFAPAGWDNALKRFGSNPDD 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPI   RG+VI FGGR L      KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIHDKRGRVIGFGGRVL-GDGMPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + AL                  +++VEGYMDV++L Q GV   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEALK----------NYPEPGKLLVVEGYMDVVALAQFGVDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+          +PD RA+L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSTFLFDTLMPQVDLRSPDGRAQLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +         K       K  +                
Sbjct: 407 LRIYLRQELGNKLGILDDSQLDKLLPRQAESAKAVAQPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  LI +P +           + +      L+  L S  V        ++ +
Sbjct: 452 -----RILIGLLIQNPQLATIVPPLDGLEQSETPGF-PLFVELVSTCVAHPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                 F + L+ L                 + D  +   Q          L R+ EE+ 
Sbjct: 506 LYRGTKFSQSLETLATW----------NHMIVDDEVETMFQDALASMYNNALERRLEEL- 554

Query: 600 KQIAQVTAKG-EAEKTAILISILHEVHIQ 627
             IA     G  AE+   L ++   +   
Sbjct: 555 --IAHDRTHGLNAEERRELWTLSQALKKH 581


>gi|28867766|ref|NP_790385.1| DNA primase [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213967689|ref|ZP_03395836.1| DNA primase [Pseudomonas syringae pv. tomato T1]
 gi|301382749|ref|ZP_07231167.1| DNA primase [Pseudomonas syringae pv. tomato Max13]
 gi|302130709|ref|ZP_07256699.1| DNA primase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28851001|gb|AAO54080.1| DNA primase [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213927465|gb|EEB61013.1| DNA primase [Pseudomonas syringae pv. tomato T1]
          Length = 652

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/669 (27%), Positives = 296/669 (44%), Gaps = 77/669 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YSACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A++F+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LNAASEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEAALPNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF+  +   + PL D  +++ T+     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGY-------------------------------- 446
            LR    Q + +      +                                         
Sbjct: 409 NLRILMRQRLSEITGLTGEAVSQLVQSAPADAPPSYDPYVDYDAMPDFADYQPQGGYEAQ 468

Query: 447 -----GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAIL 498
                 +    N +  D      +  +    + +  + P+  E    A L TL++HP + 
Sbjct: 469 QEWTPKKAGGPNQKKWDNNKSWGKKGKRQEFEPRTPRVPTAVEPPMQAALRTLLHHPELA 528

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           ++  +  +    ++    +L   L     +       ++  R      G LL+ L  +  
Sbjct: 529 EKV-ENASHFAAEDQSNAQLLVALIEARQKNPSLRSLQLIARWHGTEQGRLLRALAEKE- 586

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
               W   T+            +L+  +R R L     +  +           E +A   
Sbjct: 587 ----WLIETDNLEQQFFDTIT-SLSARQRERSLDHLISKARQ----------TELSAEEK 631

Query: 619 SILHEVHIQ 627
             L E+  +
Sbjct: 632 IQLRELLNR 640


>gi|293449404|ref|ZP_06663825.1| DNA primase [Escherichia coli B088]
 gi|291322494|gb|EFE61923.1| DNA primase [Escherichia coli B088]
          Length = 581

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/630 (28%), Positives = 301/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+  VV+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYVVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|27364090|ref|NP_759618.1| DNA primase [Vibrio vulnificus CMCP6]
 gi|27360208|gb|AAO09145.1| DNA primase [Vibrio vulnificus CMCP6]
          Length = 587

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/632 (25%), Positives = 290/632 (45%), Gaps = 57/632 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDPRVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114
           +CF C   G+ + F+       F+E+++ LA+  G+ +P              +     +
Sbjct: 60  HCFGCGAHGNAIDFMMEFERLEFVEAIEELASYLGLDVPREQRSTNTKFSQAPQASSSQK 119

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  L+   + F+ + LK +  K    YL  RG+    ++ F +GY  D    +R++  
Sbjct: 120 RSLYDLMASISQFYRNQLKLSSGKIAIDYLKNRGLSGEIVQKFGIGYIADEWDLVRKNFG 179

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           Q   ++E ++  G+LI+ +     YDRFR R++FPIR  RG+VI FGGR L    + KYL
Sbjct: 180 QHPEAQEMLVAGGMLIENEKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKYL 237

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV   
Sbjct: 238 NSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDYS 287

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGT+ T   L++L++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L 
Sbjct: 288 VASLGTSTTGDHLQVLFRQTSTVVCCYDGDRAGREAAWRAMENALPYLNDGRQLKFMFLP 347

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            GEDPDS+IR +GK  FE+ +  ++PL + ++    +    ++ +  A+L       I+ 
Sbjct: 348 DGEDPDSYIRQFGKAQFEQQVANAMPLSEFMFSSLAQQVDMSSKEGMAKLTTLAVPLIDK 407

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           +    LR Y  + +  RL  + ++ + +         +  +   +  P + L ++ +   
Sbjct: 408 VPGGTLRLYLRELLGRRLGLVDERQLQQLID------RQGQTDKKPQPHRELKRTPM--- 458

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                       ++  LI  P+  Q               L  L   +      +     
Sbjct: 459 ----------REVVALLIQRPSFSQLVPDLTPVKHLTIPGL-SLLIEVLERCQARPNITT 507

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            ++ +        +LL +L              +  +  + +   Q +          +Q
Sbjct: 508 GQLLESWRGSQNEQLLSRLAGWEIPLDD-DNEEDIFLDSLDKILAQCV---------EKQ 557

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            E ++ +   +    +  +   L++++ ++  
Sbjct: 558 IENLQAKDRSIGLSAD--ERRELMALMLDLKA 587


>gi|26249648|ref|NP_755688.1| DNA primase [Escherichia coli CFT073]
 gi|91212495|ref|YP_542481.1| DNA primase [Escherichia coli UTI89]
 gi|117625378|ref|YP_855495.1| DNA primase [Escherichia coli APEC O1]
 gi|218560153|ref|YP_002393066.1| DNA primase [Escherichia coli S88]
 gi|227887790|ref|ZP_04005595.1| DNA primase [Escherichia coli 83972]
 gi|237706171|ref|ZP_04536652.1| DNA primase [Escherichia sp. 3_2_53FAA]
 gi|300973233|ref|ZP_07172072.1| DNA primase [Escherichia coli MS 45-1]
 gi|301048096|ref|ZP_07195134.1| DNA primase [Escherichia coli MS 185-1]
 gi|78099121|sp|Q8FDG5|PRIM_ECOL6 RecName: Full=DNA primase
 gi|26110076|gb|AAN82262.1|AE016767_22 DNA primase [Escherichia coli CFT073]
 gi|91074069|gb|ABE08950.1| DNA primase [Escherichia coli UTI89]
 gi|115514502|gb|ABJ02577.1| DNA primase [Escherichia coli APEC O1]
 gi|218366922|emb|CAR04693.1| DNA primase [Escherichia coli S88]
 gi|226899211|gb|EEH85470.1| DNA primase [Escherichia sp. 3_2_53FAA]
 gi|227835186|gb|EEJ45652.1| DNA primase [Escherichia coli 83972]
 gi|294489668|gb|ADE88424.1| DNA primase [Escherichia coli IHE3034]
 gi|300300016|gb|EFJ56401.1| DNA primase [Escherichia coli MS 185-1]
 gi|300410813|gb|EFJ94351.1| DNA primase [Escherichia coli MS 45-1]
 gi|307555173|gb|ADN47948.1| DNA primase [Escherichia coli ABU 83972]
 gi|307625319|gb|ADN69623.1| DNA primase [Escherichia coli UM146]
 gi|315288820|gb|EFU48218.1| DNA primase [Escherichia coli MS 110-3]
 gi|315295034|gb|EFU54371.1| DNA primase [Escherichia coli MS 153-1]
 gi|323951400|gb|EGB47275.1| DNA primase [Escherichia coli H252]
 gi|323957773|gb|EGB53487.1| DNA primase [Escherichia coli H263]
          Length = 581

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 177/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +++AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLVDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|163802688|ref|ZP_02196579.1| DNA primase [Vibrio sp. AND4]
 gi|159173576|gb|EDP58396.1| DNA primase [Vibrio sp. AND4]
          Length = 586

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 175/639 (27%), Positives = 296/639 (46%), Gaps = 68/639 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR+FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRNFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---------EKKEKI 113
           +CF C V G+ + F+       F+E+++ LA+  G+ +P               +     
Sbjct: 60  HCFGCGVHGNAIDFIMEFERLEFVEAIEELASYLGLDVPREQRSGSGGQFKSGPQASSSE 119

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  ++     F+ + LK    K    YL +RG+    ++ F +GY  D    +R++ 
Sbjct: 120 KRSLYDVMGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q   +++ ++  G+LI+ +     YDRFR R++FPI   RG+VI FGGR L    + KY
Sbjct: 180 GQNKDNQDMLVTGGMLIENEKGNR-YDRFRGRIMFPIHDRRGRVIGFGGRVL-GDGTPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++  R          I++VEGYMDV++L Q GV  
Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPPR----------ILVVEGYMDVVALAQYGVDY 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   +++L++ +  +V C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 288 SVASLGTSTTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFL 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS+IR +GK AFE+ + ++ PL   L+    E    N    + ++ L  +    
Sbjct: 348 PDGEDPDSYIRKHGKQAFEQQVEQATPLSSYLFDNLIELHQINLGNNEGKSALRAYASGL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D      Y Q + ++L       + E +G+    +++           + + + L
Sbjct: 408 IDKIPDP-----YFQELLEKL-------LDERTGFDNRLRRSRN---------KTINTRL 446

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
              K  K+  +RE  ++  LI +P+  Q      +        L  L+  +        +
Sbjct: 447 QPHKEIKRTPMRE--VIALLIQNPSYAQMVPDLSSVRELSIPGL-SLFVDVLDKCEAHPH 503

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +         LL +L              E  +  + +   Q +         
Sbjct: 504 INTGQLLEHWRNSQNETLLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV--------- 553

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            +Q E ++   A+  + G    +   +  L E+   +  
Sbjct: 554 EKQIENLQ---AKARSVG---LSTEEMRELQELMKDLKA 586


>gi|315297746|gb|EFU57023.1| DNA primase [Escherichia coli MS 16-3]
          Length = 581

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSPTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|312963433|ref|ZP_07777915.1| DNA primase [Pseudomonas fluorescens WH6]
 gi|311282239|gb|EFQ60838.1| DNA primase [Pseudomonas fluorescens WH6]
          Length = 656

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 180/671 (26%), Positives = 293/671 (43%), Gaps = 77/671 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQMKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P  +     + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEELAKAAGMEIPREESGRPHKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A DF+  +LK+  + K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LTAAADFYRQALKSHPQRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLL++   +   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPET
Sbjct: 180 QKAMIDAGLLVENAETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A    +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKNNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  ++ L+++ P ++ CFDGD  G  AA++A++  L  L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHMKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF   +   + PL D  +++ TE     + + +A +       I+ +   
Sbjct: 349 DTLVRAEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------- 441
            LR    Q + +      +                                         
Sbjct: 409 NLRTLMRQRLLEITGLSGEAVSQLVHSAPQDAPPAYDPGMDYDAMPDYADFHQPHEAYAP 468

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAIL 498
           +     +      +  D+K  S+   +    +    + P   EA +   L TLI+HP + 
Sbjct: 469 QQEWTPKKPGAGGKKWDKKPWSKNGKRGDRDEAYAPRTPVAVEAPMLIALRTLIHHPQLA 528

Query: 499 QEQYQELADIRYDNN--ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            +     +   + N      ++   L     +       ++  R      G LLK L  +
Sbjct: 529 GKVE---SADHFANESNSYAQVLIALIEAVQKNPKLNSIQLMARWHGTEQGRLLKVLAEK 585

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                 W    +           + L+  +  + L    +   +          A++   
Sbjct: 586 E-----WLIDGDNLEQQFLDTITR-LSAGQHTQTLDELIKRARQ------PGLSADEQIQ 633

Query: 617 LISILHEVHIQ 627
           +   + ++  Q
Sbjct: 634 IAKQMRDLLKQ 644


>gi|193062012|ref|ZP_03043108.1| DNA primase [Escherichia coli E22]
 gi|192932232|gb|EDV84830.1| DNA primase [Escherichia coli E22]
          Length = 581

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIRLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|110806953|ref|YP_690473.1| DNA primase [Shigella flexneri 5 str. 8401]
 gi|110616501|gb|ABF05168.1| DNA primase [Shigella flexneri 5 str. 8401]
          Length = 581

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/630 (28%), Positives = 301/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L  + +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDRQVERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|146313108|ref|YP_001178182.1| DNA primase [Enterobacter sp. 638]
 gi|145319984|gb|ABP62131.1| DNA primase [Enterobacter sp. 638]
          Length = 581

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 177/628 (28%), Positives = 295/628 (46%), Gaps = 52/628 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDKLEFVETVEELAAMHNLEVPYEAGSGPTQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E    F+  SLK +  +    YL++RG+    I  F +GYAP    ++ +        
Sbjct: 119 LMEGLNSFYQQSLKQSAAEPARQYLNQRGLSDDVIARFAIGYAPPGWDNVLKRFGGNSED 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L      KYLNSPET
Sbjct: 179 RKSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPRR----------LLVVEGYMDVVALAQFDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGREAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  +  + PL   L+         +TPD RA+L       I  +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEVAQPLSTFLFNSLMPQVDLSTPDGRAQLSTLALPLITQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +                     P+ +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKLSENGAVRPAPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +  +    +         L  L+S L +  + Q      ++ +
Sbjct: 452 -----RILIGLLVQNPELAPQVPSLVGLNHEKLPGL-ALFSELVNTCLSQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                     L++L        +W    + +I    + +  +L  +    +L  ++EE+ 
Sbjct: 506 HYRGTKESATLEKL-------SMWDDIADKDI--AEKTFTDSLN-HMFDSMLELRQEELI 555

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627
            +  + T    +E+   L  +  E+  +
Sbjct: 556 AR--ERTHGLSSEERRELWMLNQELARK 581


>gi|296269170|ref|YP_003651802.1| DNA primase [Thermobispora bispora DSM 43833]
 gi|296091957|gb|ADG87909.1| DNA primase [Thermobispora bispora DSM 43833]
          Length = 645

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 161/656 (24%), Positives = 260/656 (39%), Gaps = 44/656 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +    PI+ +IG+++       NA  G+    CPFH+EKTPSF+   S+G+
Sbjct: 4   RISDEDIALVRERSPIAEVIGEHIQL----RNAGGGNLKGLCPFHEEKTPSFNVTPSRGY 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIR 119
           YYCF C   GD ++F+  +   SF E+V+RLA  AG+ L  V       +++  +T L+ 
Sbjct: 60  YYCFGCGEGGDVITFIRKIENLSFTEAVERLAQRAGIRLRYVQGGYVPGREQGERTRLLA 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A +F+   L          +L  RG D    E F +GYAP +  +L  HL  +GF+
Sbjct: 120 AHRAAAEFYAEQLTTPEAAPGRRFLAGRGFDRADAERFGVGYAPAAWDALSRHLIARGFT 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238
            +++I+ GL  +        DRFR RLI+PIR   G VI FG R L    +  KYLN+PE
Sbjct: 180 VQELIKGGLAKE--GRRGPVDRFRGRLIWPIRDIVGDVIGFGARKLHDSDDGPKYLNTPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A   + K             +++VEGY DV++   AGV   V++ 
Sbjct: 238 TPLYRKSQVLYGIDLAKREIAK----------RGQVVIVEGYTDVMACHLAGVPTAVATC 287

Query: 299 GTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  E  +++L +           ++  FDGD+ G RAA +A       +    +    
Sbjct: 288 GTAFGEEHIKILRRLLFDQAEFRGEVIFTFDGDEAGQRAALRAFQEEQRFVT---QTFVA 344

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP       G  A   LI   +PL     +        +T + R          
Sbjct: 345 VQPDGLDPCELRLERGDAAVRDLIASRVPLFAFAIRSVLSRYDLDTNEGRLAALDAAAPI 404

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ-------------KYITEHSGYGRYWKKNARHRD 458
           +  IKD  LR  Y+  +   L  + +             +      G G           
Sbjct: 405 VASIKDPGLRKAYAVDLDRWLGFMDEGFVLRRVQQAAARQRAARRRGPGHAQPPAEPAAR 464

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
             G      +    +   +      EA  L   I  PA+L  ++  L    +   E   L
Sbjct: 465 PSGAPPGGARRQQARPNPADPAVRLEAEALKLAIQRPALLGPEFDALGAEVFTVPEHAAL 524

Query: 519 WSFL-FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           +  +  +          +E   RL +        + D       L      A+  D  + 
Sbjct: 525 YEVITAAGGTAAAGPGGQEWVDRLLQGAAAAGSAESDLTGLVTRLAVEAPFADAED-EER 583

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           Y  A+    +   + R    ++ ++ ++    E ++   L   L  +  Q   +  
Sbjct: 584 YGTAVLAGLQEIAVGRAIARVKSRLQRLNPVEEQQEYNRLFGELIALEQQRRVLRE 639


>gi|194431628|ref|ZP_03063919.1| DNA primase [Shigella dysenteriae 1012]
 gi|194419984|gb|EDX36062.1| DNA primase [Shigella dysenteriae 1012]
 gi|320179313|gb|EFW54271.1| DNA primase [Shigella boydii ATCC 9905]
 gi|332086770|gb|EGI91907.1| DNA primase [Shigella dysenteriae 155-74]
          Length = 581

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SLK         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLKQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLPQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|15833203|ref|NP_311976.1| DNA primase [Escherichia coli O157:H7 str. Sakai]
 gi|16130962|ref|NP_417538.1| DNA primase [Escherichia coli str. K-12 substr. MG1655]
 gi|24114366|ref|NP_708876.1| DNA primase [Shigella flexneri 2a str. 301]
 gi|30064414|ref|NP_838585.1| DNA primase [Shigella flexneri 2a str. 2457T]
 gi|74313601|ref|YP_312020.1| DNA primase [Shigella sonnei Ss046]
 gi|89109836|ref|AP_003616.1| DNA primase [Escherichia coli str. K-12 substr. W3110]
 gi|110643310|ref|YP_671040.1| DNA primase [Escherichia coli 536]
 gi|157156565|ref|YP_001464527.1| DNA primase [Escherichia coli E24377A]
 gi|168754038|ref|ZP_02779045.1| DNA primase [Escherichia coli O157:H7 str. EC4401]
 gi|168769475|ref|ZP_02794482.1| DNA primase [Escherichia coli O157:H7 str. EC4486]
 gi|168773277|ref|ZP_02798284.1| DNA primase [Escherichia coli O157:H7 str. EC4196]
 gi|168781201|ref|ZP_02806208.1| DNA primase [Escherichia coli O157:H7 str. EC4076]
 gi|168785941|ref|ZP_02810948.1| DNA primase [Escherichia coli O157:H7 str. EC869]
 gi|168797658|ref|ZP_02822665.1| DNA primase [Escherichia coli O157:H7 str. EC508]
 gi|170082609|ref|YP_001731929.1| DNA primase [Escherichia coli str. K-12 substr. DH10B]
 gi|170680884|ref|YP_001745338.1| DNA primase [Escherichia coli SMS-3-5]
 gi|193067246|ref|ZP_03048214.1| DNA primase [Escherichia coli E110019]
 gi|194427677|ref|ZP_03060224.1| DNA primase [Escherichia coli B171]
 gi|194439800|ref|ZP_03071866.1| DNA primase [Escherichia coli 101-1]
 gi|195937212|ref|ZP_03082594.1| DNA primase [Escherichia coli O157:H7 str. EC4024]
 gi|208811926|ref|ZP_03253255.1| DNA primase [Escherichia coli O157:H7 str. EC4045]
 gi|208820632|ref|ZP_03260952.1| DNA primase [Escherichia coli O157:H7 str. EC4042]
 gi|209396560|ref|YP_002272539.1| DNA primase [Escherichia coli O157:H7 str. EC4115]
 gi|209920538|ref|YP_002294622.1| DNA primase [Escherichia coli SE11]
 gi|217327354|ref|ZP_03443437.1| DNA primase [Escherichia coli O157:H7 str. TW14588]
 gi|218555636|ref|YP_002388549.1| DNA primase [Escherichia coli IAI1]
 gi|218691371|ref|YP_002399583.1| DNA primase [Escherichia coli ED1a]
 gi|218696771|ref|YP_002404438.1| DNA primase [Escherichia coli 55989]
 gi|218706691|ref|YP_002414210.1| DNA primase [Escherichia coli UMN026]
 gi|238902177|ref|YP_002927973.1| DNA primase [Escherichia coli BW2952]
 gi|253772098|ref|YP_003034929.1| DNA primase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254038235|ref|ZP_04872293.1| DNA primase [Escherichia sp. 1_1_43]
 gi|254163013|ref|YP_003046121.1| DNA primase [Escherichia coli B str. REL606]
 gi|254795017|ref|YP_003079854.1| DNA primase [Escherichia coli O157:H7 str. TW14359]
 gi|256019018|ref|ZP_05432883.1| DNA primase [Shigella sp. D9]
 gi|256024354|ref|ZP_05438219.1| DNA primase [Escherichia sp. 4_1_40B]
 gi|260845820|ref|YP_003223598.1| DNA primase DnaG [Escherichia coli O103:H2 str. 12009]
 gi|261228079|ref|ZP_05942360.1| DNA primase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254935|ref|ZP_05947468.1| DNA primase DnaG [Escherichia coli O157:H7 str. FRIK966]
 gi|291284445|ref|YP_003501263.1| DNA primase [Escherichia coli O55:H7 str. CB9615]
 gi|293406679|ref|ZP_06650605.1| DNA primase [Escherichia coli FVEC1412]
 gi|293412443|ref|ZP_06655166.1| DNA primase [Escherichia coli B354]
 gi|297518948|ref|ZP_06937334.1| DNA primase [Escherichia coli OP50]
 gi|298382420|ref|ZP_06992017.1| DNA primase [Escherichia coli FVEC1302]
 gi|300818833|ref|ZP_07099039.1| DNA primase [Escherichia coli MS 107-1]
 gi|300821661|ref|ZP_07101807.1| DNA primase [Escherichia coli MS 119-7]
 gi|300901449|ref|ZP_07119534.1| DNA primase [Escherichia coli MS 198-1]
 gi|300905792|ref|ZP_07123526.1| DNA primase [Escherichia coli MS 84-1]
 gi|300917394|ref|ZP_07134060.1| DNA primase [Escherichia coli MS 115-1]
 gi|300923728|ref|ZP_07139753.1| DNA primase [Escherichia coli MS 182-1]
 gi|300931952|ref|ZP_07147249.1| DNA primase [Escherichia coli MS 187-1]
 gi|300937449|ref|ZP_07152275.1| DNA primase [Escherichia coli MS 21-1]
 gi|300950723|ref|ZP_07164611.1| DNA primase [Escherichia coli MS 116-1]
 gi|300958454|ref|ZP_07170593.1| DNA primase [Escherichia coli MS 175-1]
 gi|301021227|ref|ZP_07185259.1| DNA primase [Escherichia coli MS 196-1]
 gi|301021859|ref|ZP_07185822.1| DNA primase [Escherichia coli MS 69-1]
 gi|301301892|ref|ZP_07208026.1| DNA primase [Escherichia coli MS 124-1]
 gi|301325580|ref|ZP_07219048.1| DNA primase [Escherichia coli MS 78-1]
 gi|301644763|ref|ZP_07244738.1| DNA primase [Escherichia coli MS 146-1]
 gi|307139754|ref|ZP_07499110.1| DNA primase [Escherichia coli H736]
 gi|307310309|ref|ZP_07589957.1| DNA primase [Escherichia coli W]
 gi|309793631|ref|ZP_07688057.1| DNA primase [Escherichia coli MS 145-7]
 gi|331643764|ref|ZP_08344895.1| DNA primase [Escherichia coli H736]
 gi|331664679|ref|ZP_08365585.1| DNA primase [Escherichia coli TA143]
 gi|331669910|ref|ZP_08370755.1| DNA primase [Escherichia coli TA271]
 gi|331674605|ref|ZP_08375365.1| DNA primase [Escherichia coli TA280]
 gi|331679142|ref|ZP_08379814.1| DNA primase [Escherichia coli H591]
 gi|332280116|ref|ZP_08392529.1| DNA primase [Shigella sp. D9]
 gi|78101809|sp|P0ABS6|PRIM_ECO57 RecName: Full=DNA primase
 gi|78101810|sp|P0ABS5|PRIM_ECOLI RecName: Full=DNA primase
 gi|78101811|sp|P0ABS7|PRIM_SHIFL RecName: Full=DNA primase
 gi|147755|gb|AAA24600.1| DNA primase [Escherichia coli]
 gi|882589|gb|AAA89146.1| CG Site No. 847; alternate gen name dnaP, parB [Escherichia coli
           str. K-12 substr. MG1655]
 gi|1617301|emb|CAA23531.1| DNA primase [Escherichia coli]
 gi|1789447|gb|AAC76102.1| DNA primase [Escherichia coli str. K-12 substr. MG1655]
 gi|13363422|dbj|BAB37372.1| DNA primase [Escherichia coli O157:H7 str. Sakai]
 gi|24053530|gb|AAN44583.1| DNA biosynthesis; DNA primase [Shigella flexneri 2a str. 301]
 gi|30042671|gb|AAP18395.1| DNA biosynthesis; DNA primase [Shigella flexneri 2a str. 2457T]
 gi|73857078|gb|AAZ89785.1| DNA primase [Shigella sonnei Ss046]
 gi|85675867|dbj|BAE77117.1| DNA primase [Escherichia coli str. K12 substr. W3110]
 gi|110344902|gb|ABG71139.1| DNA primase [Escherichia coli 536]
 gi|157078595|gb|ABV18303.1| DNA primase [Escherichia coli E24377A]
 gi|169890444|gb|ACB04151.1| DNA primase [Escherichia coli str. K-12 substr. DH10B]
 gi|170518602|gb|ACB16780.1| DNA primase [Escherichia coli SMS-3-5]
 gi|187770989|gb|EDU34833.1| DNA primase [Escherichia coli O157:H7 str. EC4196]
 gi|189001079|gb|EDU70065.1| DNA primase [Escherichia coli O157:H7 str. EC4076]
 gi|189358475|gb|EDU76894.1| DNA primase [Escherichia coli O157:H7 str. EC4401]
 gi|189361484|gb|EDU79903.1| DNA primase [Escherichia coli O157:H7 str. EC4486]
 gi|189374115|gb|EDU92531.1| DNA primase [Escherichia coli O157:H7 str. EC869]
 gi|189379826|gb|EDU98242.1| DNA primase [Escherichia coli O157:H7 str. EC508]
 gi|192959203|gb|EDV89638.1| DNA primase [Escherichia coli E110019]
 gi|194414185|gb|EDX30460.1| DNA primase [Escherichia coli B171]
 gi|194421248|gb|EDX37269.1| DNA primase [Escherichia coli 101-1]
 gi|208733203|gb|EDZ81890.1| DNA primase [Escherichia coli O157:H7 str. EC4045]
 gi|208740755|gb|EDZ88437.1| DNA primase [Escherichia coli O157:H7 str. EC4042]
 gi|209157960|gb|ACI35393.1| DNA primase [Escherichia coli O157:H7 str. EC4115]
 gi|209759238|gb|ACI77931.1| DNA primase [Escherichia coli]
 gi|209759240|gb|ACI77932.1| DNA primase [Escherichia coli]
 gi|209759242|gb|ACI77933.1| DNA primase [Escherichia coli]
 gi|209759244|gb|ACI77934.1| DNA primase [Escherichia coli]
 gi|209759246|gb|ACI77935.1| DNA primase [Escherichia coli]
 gi|209913797|dbj|BAG78871.1| DNA primase [Escherichia coli SE11]
 gi|217319721|gb|EEC28146.1| DNA primase [Escherichia coli O157:H7 str. TW14588]
 gi|218353503|emb|CAU99621.1| DNA primase [Escherichia coli 55989]
 gi|218362404|emb|CAR00028.1| DNA primase [Escherichia coli IAI1]
 gi|218428935|emb|CAR09738.1| DNA primase [Escherichia coli ED1a]
 gi|218433788|emb|CAR14705.1| DNA primase [Escherichia coli UMN026]
 gi|222034798|emb|CAP77540.1| DNA primase [Escherichia coli LF82]
 gi|226839859|gb|EEH71880.1| DNA primase [Escherichia sp. 1_1_43]
 gi|238860841|gb|ACR62839.1| DNA primase [Escherichia coli BW2952]
 gi|242378616|emb|CAQ33403.1| DNA primase, subunit of primosome [Escherichia coli BL21(DE3)]
 gi|253323142|gb|ACT27744.1| DNA primase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974914|gb|ACT40585.1| DNA primase [Escherichia coli B str. REL606]
 gi|253979070|gb|ACT44740.1| DNA primase [Escherichia coli BL21(DE3)]
 gi|254594417|gb|ACT73778.1| DNA primase [Escherichia coli O157:H7 str. TW14359]
 gi|257760967|dbj|BAI32464.1| DNA primase DnaG [Escherichia coli O103:H2 str. 12009]
 gi|260447899|gb|ACX38321.1| DNA primase [Escherichia coli DH1]
 gi|281602455|gb|ADA75439.1| DNA primase [Shigella flexneri 2002017]
 gi|290764318|gb|ADD58279.1| DNA primase [Escherichia coli O55:H7 str. CB9615]
 gi|291426685|gb|EFE99717.1| DNA primase [Escherichia coli FVEC1412]
 gi|291469214|gb|EFF11705.1| DNA primase [Escherichia coli B354]
 gi|298277560|gb|EFI19076.1| DNA primase [Escherichia coli FVEC1302]
 gi|299881585|gb|EFI89796.1| DNA primase [Escherichia coli MS 196-1]
 gi|300314895|gb|EFJ64679.1| DNA primase [Escherichia coli MS 175-1]
 gi|300355151|gb|EFJ71021.1| DNA primase [Escherichia coli MS 198-1]
 gi|300397875|gb|EFJ81413.1| DNA primase [Escherichia coli MS 69-1]
 gi|300402391|gb|EFJ85929.1| DNA primase [Escherichia coli MS 84-1]
 gi|300415351|gb|EFJ98661.1| DNA primase [Escherichia coli MS 115-1]
 gi|300419998|gb|EFK03309.1| DNA primase [Escherichia coli MS 182-1]
 gi|300449960|gb|EFK13580.1| DNA primase [Escherichia coli MS 116-1]
 gi|300457484|gb|EFK20977.1| DNA primase [Escherichia coli MS 21-1]
 gi|300460375|gb|EFK23868.1| DNA primase [Escherichia coli MS 187-1]
 gi|300525799|gb|EFK46868.1| DNA primase [Escherichia coli MS 119-7]
 gi|300528618|gb|EFK49680.1| DNA primase [Escherichia coli MS 107-1]
 gi|300842873|gb|EFK70633.1| DNA primase [Escherichia coli MS 124-1]
 gi|300847631|gb|EFK75391.1| DNA primase [Escherichia coli MS 78-1]
 gi|301076917|gb|EFK91723.1| DNA primase [Escherichia coli MS 146-1]
 gi|306909204|gb|EFN39699.1| DNA primase [Escherichia coli W]
 gi|308122588|gb|EFO59850.1| DNA primase [Escherichia coli MS 145-7]
 gi|309703497|emb|CBJ02837.1| DNA primase [Escherichia coli ETEC H10407]
 gi|312947637|gb|ADR28464.1| DNA primase [Escherichia coli O83:H1 str. NRG 857C]
 gi|313648182|gb|EFS12628.1| DNA primase [Shigella flexneri 2a str. 2457T]
 gi|315062374|gb|ADT76701.1| DNA primase [Escherichia coli W]
 gi|315137659|dbj|BAJ44818.1| DNA primase [Escherichia coli DH1]
 gi|315256979|gb|EFU36947.1| DNA primase [Escherichia coli MS 85-1]
 gi|315617139|gb|EFU97748.1| DNA primase [Escherichia coli 3431]
 gi|320176469|gb|EFW51519.1| DNA primase [Shigella dysenteriae CDC 74-1112]
 gi|320182889|gb|EFW57763.1| DNA primase [Shigella flexneri CDC 796-83]
 gi|320189417|gb|EFW64076.1| DNA primase [Escherichia coli O157:H7 str. EC1212]
 gi|320640140|gb|EFX09712.1| DNA primase [Escherichia coli O157:H7 str. G5101]
 gi|320645438|gb|EFX14447.1| DNA primase [Escherichia coli O157:H- str. 493-89]
 gi|320650749|gb|EFX19206.1| DNA primase [Escherichia coli O157:H- str. H 2687]
 gi|320656127|gb|EFX24039.1| DNA primase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320661817|gb|EFX29225.1| DNA primase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666968|gb|EFX33944.1| DNA primase [Escherichia coli O157:H7 str. LSU-61]
 gi|323163116|gb|EFZ48949.1| DNA primase [Escherichia coli E128010]
 gi|323168089|gb|EFZ53776.1| DNA primase [Shigella sonnei 53G]
 gi|323173689|gb|EFZ59318.1| DNA primase [Escherichia coli LT-68]
 gi|323183649|gb|EFZ69046.1| DNA primase [Escherichia coli 1357]
 gi|323377038|gb|ADX49306.1| DNA primase [Escherichia coli KO11]
 gi|323935932|gb|EGB32227.1| DNA primase [Escherichia coli E1520]
 gi|323946864|gb|EGB42882.1| DNA primase [Escherichia coli H120]
 gi|323960999|gb|EGB56616.1| DNA primase [Escherichia coli H489]
 gi|323971811|gb|EGB67036.1| DNA primase [Escherichia coli TA007]
 gi|324008870|gb|EGB78089.1| DNA primase [Escherichia coli MS 57-2]
 gi|324018216|gb|EGB87435.1| DNA primase [Escherichia coli MS 117-3]
 gi|324119674|gb|EGC13555.1| DNA primase [Escherichia coli E1167]
 gi|326337769|gb|EGD61603.1| DNA primase [Escherichia coli O157:H7 str. 1125]
 gi|326347334|gb|EGD71059.1| DNA primase [Escherichia coli O157:H7 str. 1044]
 gi|331037235|gb|EGI09459.1| DNA primase [Escherichia coli H736]
 gi|331058610|gb|EGI30591.1| DNA primase [Escherichia coli TA143]
 gi|331062823|gb|EGI34737.1| DNA primase [Escherichia coli TA271]
 gi|331068699|gb|EGI40094.1| DNA primase [Escherichia coli TA280]
 gi|331073207|gb|EGI44530.1| DNA primase [Escherichia coli H591]
 gi|332102468|gb|EGJ05814.1| DNA primase [Shigella sp. D9]
 gi|332345020|gb|AEE58354.1| DNA primase DnaG [Escherichia coli UMNK88]
 gi|332752739|gb|EGJ83124.1| DNA primase [Shigella flexneri K-671]
 gi|332753123|gb|EGJ83507.1| DNA primase [Shigella flexneri 4343-70]
 gi|332754328|gb|EGJ84694.1| DNA primase [Shigella flexneri 2747-71]
 gi|332765315|gb|EGJ95539.1| DNA primase [Shigella flexneri 2930-71]
 gi|332999826|gb|EGK19410.1| DNA primase [Shigella flexneri K-272]
 gi|332999964|gb|EGK19547.1| DNA primase [Shigella flexneri K-218]
 gi|333014867|gb|EGK34212.1| DNA primase [Shigella flexneri K-304]
 gi|333015694|gb|EGK35033.1| DNA primase [Shigella flexneri K-227]
          Length = 581

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|329925848|ref|ZP_08280577.1| DNA primase [Paenibacillus sp. HGF5]
 gi|328939594|gb|EGG35942.1| DNA primase [Paenibacillus sp. HGF5]
          Length = 605

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/631 (23%), Positives = 275/631 (43%), Gaps = 37/631 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           N P D I+++L    I + + +YV   ++            CPFH EKTPSF     +  
Sbjct: 7   NIPDDVIEEVLAKSDIVDTVSKYVHLTKQGK-----YLKGLCPFHSEKTPSFTVTPERQI 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-EKKEKIQTDLIRL 120
           +YC+ C   G+ + F   + G SF E+V+ +A    + LP         +   +  LI  
Sbjct: 62  FYCYGCGKGGNAIKFRMEIEGFSFPEAVKTMAEENDISLPEGQGVPVIPRNPEKERLIEA 121

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E++   +H  LKN         YL  RG++   I+ F++GYAPD   +L + L ++ F 
Sbjct: 122 YELSAKLYHFLLKNTEHGTEAMKYLRARGMNDKMIDQFQIGYAPDRWDTLVQFLTKRSFD 181

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            +++   GLL          DRFR R++FPI    G+VIAF GR L      KYLNSPET
Sbjct: 182 LKEMERGGLLSARHEQEGYLDRFRGRIMFPIHDRSGKVIAFAGRIL-GDGQPKYLNSPET 240

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           +LF+K + LYN   A   ++K             I+L EGY DV+S  +AG+ N V+++G
Sbjct: 241 LLFNKSRTLYNLHQAKTSIRKL----------RQILLFEGYGDVISSWEAGLHNGVATMG 290

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LTE Q+ ++  ++  +V+ +DGD  G+ AA K I +       G +V   L++ G DP
Sbjct: 291 TSLTENQVAIMKSVAEEVVVVYDGDKAGMAAASKVIPM---LEGVGLKVRIALVNEGMDP 347

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +IR +G   F  ++  ++           +N      D +          I  +    
Sbjct: 348 DDYIRKFGPERFRHVVETAVSTTKFKLIYLKKNHILLEEDGKIAYAKEALPIIAVLNSST 407

Query: 420 LRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            R  Y + +   L   ++    +        +    +  +++++  + R  +       L
Sbjct: 408 EREVYLRELSSELHLSYESLKQDCNLLRQSMQKKMGDGDNKEKRWNNGRHKKGRQPAPAL 467

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++      +     L +  ++  +   + ++L++ + + K      
Sbjct: 468 LPAYHAAERRLLSLMLQDAEAARYVGDRLGE-AFNIEDHAAIAAYLYAFYAQGKSPDISR 526

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
               L +        +L+  V    +  A  E N+  +    ++ L   ++     R+ +
Sbjct: 527 FMSSLQD-------DRLEMTVSSIMMMEAPAEWNVQVLDDCIREVLKFPQQ-----REID 574

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           + ++++ +    G+  + A + S +  +  Q
Sbjct: 575 QKKEEMIKAERSGDFLRAAQIASEIIALERQ 605


>gi|331017644|gb|EGH97700.1| DNA primase [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 652

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/669 (27%), Positives = 296/669 (44%), Gaps = 77/669 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKTGKN-----YSACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A++F+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LNAASEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEAALPNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF+  +   + PL D  +++ T+     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGY-------------------------------- 446
            LR    Q + +      +                                         
Sbjct: 409 NLRILMRQRLSEITGLTGEAVSQLVQSAPADAPPSYDPYVDYDAMPDFADYQPQGGYEAQ 468

Query: 447 -----GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAIL 498
                 +    N +  D      +  +    + +  + P+  E    A L TL++HP + 
Sbjct: 469 QEWTPKKAGGPNQKKWDNNKSWGKKGKRQEFEPRTPRVPTAVEPPMQAALRTLLHHPELA 528

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           ++  +  +    ++    +L   L     +       ++  R      G LL+ L  +  
Sbjct: 529 EKV-ENASHFAAEDQSNAQLLVALIEARQKNPSLRSLQLIARWHGTEQGRLLRALAEKE- 586

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
               W   T+            +L+  +R R L     +  +           E +A   
Sbjct: 587 ----WLIETDNLEQQFFDTIT-SLSARQRERSLDHLISKARQ----------TELSAEEK 631

Query: 619 SILHEVHIQ 627
             L E+  +
Sbjct: 632 IQLRELLNR 640


>gi|320201976|gb|EFW76551.1| DNA primase [Escherichia coli EC4100B]
          Length = 581

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 181/631 (28%), Positives = 302/631 (47%), Gaps = 58/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627
           +   IA+  A G   E+   L ++  E+  +
Sbjct: 554 L---IARERAHGLSNEERLELWTLNQELAKK 581


>gi|300977466|ref|ZP_07173929.1| DNA primase [Escherichia coli MS 200-1]
 gi|300308324|gb|EFJ62844.1| DNA primase [Escherichia coli MS 200-1]
 gi|324011985|gb|EGB81204.1| DNA primase [Escherichia coli MS 60-1]
          Length = 581

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESSVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|302064028|ref|ZP_07255569.1| DNA primase [Pseudomonas syringae pv. tomato K40]
          Length = 652

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 181/669 (27%), Positives = 293/669 (43%), Gaps = 77/669 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YSACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A++F+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LNAASEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEAALPNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF+  +   + PL D  +++ T+     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHS---------------------------------- 444
            LR    Q + +      +                                         
Sbjct: 409 NLRILMRQRLSEITGLTGEAVSQLVQSAPADAPPSYDPYVDYDAMPDFADYQPQGGYEAQ 468

Query: 445 ------GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
                   G   +K   +    G   +  +      ++         A L TL++HP + 
Sbjct: 469 QEWTPKKAGGPNQKKWDNNKSWGKKGKRQEFEPRTPRVPTAVDPPMQAALRTLLHHPELA 528

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           ++  +  +    ++    +L   L     +       ++  R      G LL+ L  +  
Sbjct: 529 EKV-ENASHFAAEDQSNAQLLVALIEARQKNPSLRSLQLIARWHGTEQGRLLRALAEKE- 586

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
               W   T+            +L+  +R R L     +  +           E +A   
Sbjct: 587 ----WLIETDNLEQQFFDTIT-SLSARQRERSLDHLISKARQ----------TELSAEEK 631

Query: 619 SILHEVHIQ 627
             L E+  +
Sbjct: 632 IQLRELLNR 640


>gi|331684718|ref|ZP_08385310.1| DNA primase [Escherichia coli H299]
 gi|284923094|emb|CBG36187.1| DNA primase [Escherichia coli 042]
 gi|331078333|gb|EGI49539.1| DNA primase [Escherichia coli H299]
          Length = 581

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERLI-------PKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|11993458|gb|AAG42747.1|AF299295_1 DNA primase [Zymomonas mobilis]
          Length = 628

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 180/636 (28%), Positives = 300/636 (47%), Gaps = 44/636 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P +F+ +L   I +S+LIG+ V   R        ++ ACCPFH+EKTPSF+ ND KGFY
Sbjct: 7   LPPEFLDELRQRITLSSLIGRTVKLTRAGR-----EFRACCPFHNEKTPSFYVNDEKGFY 61

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F++   G SF+++V+ LA  AG+ +P  +P   ++ K    L  ++ 
Sbjct: 62  HCFGCGAHGDAIRFVTKTRGLSFMDAVRELAGQAGMDIPEANPAAVRQAKRTATLHDIMA 121

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F   L       +  YLD RGI     + F LG+AP+ R  L+  L      +  
Sbjct: 122 EAAKWFSEQLHGIEGAEVRRYLDNRGISPAIAQNFGLGFAPNGRGRLKNALSHHAVEKLI 181

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--------KGESVKYL 234
            +   + ++G +    YDRFR RL+ PI+  RG++IAFGGR L            S KYL
Sbjct: 182 EVGLLISVEGRD---PYDRFRGRLMIPIKDQRGRIIAFGGRRLESIEGGNSLPDNSPKYL 238

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET LF KG+ LYN   A    ++  R          II+VEGY+DV+ L QAG+   
Sbjct: 239 NSPETPLFDKGRTLYNIDKASQAARRQNR----------IIVVEGYLDVIGLAQAGIHEA 288

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+ LGTALTE+Q+  LW++  + +LCFDGD  G +AA +A +  L    PG  ++FV L 
Sbjct: 289 VAPLGTALTEHQIERLWRIEHKPILCFDGDSAGQKAAVRAAERALVQAHPGKTLSFVTLP 348

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G+DPD  ++  GK+AFE+++   + L  +L++ +       +P+ RA L   L      
Sbjct: 349 NGKDPDDLVKEQGKSAFEEVLSRPIALDRLLYRFQASQIDPQSPEGRAALSKRLDELAAS 408

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
            +D+ +   Y    ++   + F             WK   +   Q   +  +  S L   
Sbjct: 409 CRDEFIARGYRSNFKNLFYENFG------------WKSKKQQDSQTTIAATVTLSDLPTP 456

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            +S         +L+ L  +P  ++++ + LA++   + +L+K    L +  + +     
Sbjct: 457 TISDLECQYSRQILIGLSLYPEAIKQRLEXLAELAVTDPKLKKWRETLITAVISEPDLDR 516

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           + I   L      ++        +D        +       +     + L    R L+ +
Sbjct: 517 DTIKAILKADANVDI--DTWDIKKDLRFPFTRPDIAPDLAIESLVALIDLVVEERELATE 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           ++++++   +     +  K+         +H +   
Sbjct: 575 EQQLKQVFTEERLIADYAKSEAA----QALHRKRRA 606


>gi|254517370|ref|ZP_05129427.1| DNA primase [gamma proteobacterium NOR5-3]
 gi|219674208|gb|EED30577.1| DNA primase [gamma proteobacterium NOR5-3]
          Length = 634

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 180/651 (27%), Positives = 286/651 (43%), Gaps = 51/651 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI DLL  + I ++I + V   +   N     Y A CPFHDEK+PSF  N  K F
Sbjct: 4   RIPQSFIDDLLDRVDIVDVIDRRVKLKKTGKN-----YSARCPFHDEKSPSFSVNPEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK----EKIQTDL 117
           YYCF C   G+ L FL       F ++V+ LA  AG+ +   + + +      E     L
Sbjct: 59  YYCFGCGAGGNALGFLMDYENIDFPQAVENLAGTAGLEVVREESRGQSSAAGGESPNKPL 118

Query: 118 IRLIEVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             L+E +T+F+  +LK   +++    YL  RG+       F LG+AP    +LR  L   
Sbjct: 119 YELMERSTEFYKDALKQHPNRQAAVDYLKNRGLTGLIARDFGLGFAPPGWDNLRSFLGDD 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
             ++ + I AG+L+  D+    YDRFR+R++FPIR  RG+VIAFGGR L   +  KYLNS
Sbjct: 179 ETTQTRAITAGMLVKNDSG-RVYDRFRDRIVFPIRDRRGRVIAFGGRVL-GDDKPKYLNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ +FHKG+ LY  + A    +K  R          II+VEGYMDV++L QAG+   V+
Sbjct: 237 PESPIFHKGRELYGLYEARRANRKLER----------IIVVEGYMDVIALAQAGISYAVA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA +   L  ++++ P +V CFDGD+ G +AA +A+   L  +  G +  F+ L  G
Sbjct: 287 TLGTATSTEHLERIFRVVPEVVFCFDGDEAGRKAAERALHNTLPTMADGRQARFLFLREG 346

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDS +R  G  AF  L+  ++PL + L++ +       T + RA L       I  + 
Sbjct: 347 EDPDSLVRKDGTQAFLDLVQAAVPLEEFLFQSQAAGLDIGTMEGRASLSKRALPLIRILP 406

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYG--------------------RYWKKNARH 456
           +   R    Q++  R        +                                +   
Sbjct: 407 EGVYRELMFQSLAQRTGLELASLMKLELPPPEPPPATEAAPDEAYYASFDEAPPPDDGDW 466

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
                      Q   +        +L +AA+   L++ P++        A       E  
Sbjct: 467 APVDDEEPSPRQREPLNQAPRAHATLTQAAI-ALLLHKPSVAS-LADAHALSALSGRE-G 523

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
           +L   +     ++       +         GELL +L  Q R        T+        
Sbjct: 524 ELLKAIVELLQKRPESSTGMLLGHWHGSPEGELLAELAGQER-----LIPTDGIEAQFED 578

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             ++  +L  R R++  +   ++ +        +  +   LI  L ++  +
Sbjct: 579 IMRRLSSLPLRQRIVE-EISGLKTRPYAQMTADDKARLPELIRALRDLDTR 628


>gi|148545674|ref|YP_001265776.1| DNA primase [Pseudomonas putida F1]
 gi|148509732|gb|ABQ76592.1| DNA primase [Pseudomonas putida F1]
          Length = 660

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/671 (26%), Positives = 295/671 (43%), Gaps = 81/671 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DL+  + I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLINRLDIVDVVSSRVQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P    +   + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREQGRRDQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           ++ A++F+  +L++    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LDAASEFYRQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  +I+AGLLI+   S   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPET
Sbjct: 180 QNVMIDAGLLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLYEARKHNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G +AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           DS +R  G  AF   +   + PL D  +++        + + +A +       I  I   
Sbjct: 349 DSLVRAEGTDAFMARINQHAQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKY--------------------------------------- 439
            LR      +++      Q+                                        
Sbjct: 409 NLRQLMRNRLKEITGLDPQQVEQLAQQAPATSSMPDYDPGYDYDAMASYTPDYGDMPQHD 468

Query: 440 ---------ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
                       + G  +    +      +   +   Q      ++         A L T
Sbjct: 469 YAPVHQEQAWKPNKGGSKKPWSDKPWDKNRKSGKPWQQRDEAPPRVPAPVEPPTLAALRT 528

Query: 491 LINHPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           L++HP +  +         + + E    +L   L     +       ++  R      G 
Sbjct: 529 LLHHPLLAGKVEDA---SHFADEEHLYSQLLVALIEAAQKNPGLSSMQLIARWHGTEQGR 585

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           LL+ L  +      W    +            +L+  +R R L +     + + +++T++
Sbjct: 586 LLRALAEKE-----WLIVADNLEQQFFDTIT-SLSARQRERSLEQLLR--KSRQSELTSE 637

Query: 609 GEAEKTAILIS 619
            + +  A+L  
Sbjct: 638 EKTQLLALLSR 648


>gi|167031435|ref|YP_001666666.1| DNA primase [Pseudomonas putida GB-1]
 gi|166857923|gb|ABY96330.1| DNA primase [Pseudomonas putida GB-1]
          Length = 660

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/671 (26%), Positives = 296/671 (44%), Gaps = 81/671 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DL+  + I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLINRLDIVDVVSSRVQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P    +   + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREQGRRDQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           ++ A++F+  +L+N    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LDAASEFYRQALRNHPTRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   S   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLYEARKHNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G +AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESALPNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           DS +R  G  AF   +   + PL D  +++ +      + + +A +       I  I   
Sbjct: 349 DSLVRAEGTDAFMARINQHAQPLADYFFEQLSVEADPRSLEGKAHMATLAAPLIEKIPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKY--------------------------------------- 439
            LR      +++      Q+                                        
Sbjct: 409 NLRQLMRNRLKEITGLDPQQVEQLAQQAPTVSSVPDYDPGYDYDAMASYTPDYGDMPQHD 468

Query: 440 ---------ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
                       +   G+    +      +   +   Q      ++         A L T
Sbjct: 469 FAPVHQEQAWKPNKSGGKKPWSDKPWDKNRKGGKPWQQRDEAPPRVPAPVEPPTLAALRT 528

Query: 491 LINHPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           L++HP +            + + E    +L   L     +       ++  R      G 
Sbjct: 529 LLHHPLLAGRVEDA---SHFADEEHLYSQLLVALIEAAQKNPGLSSMQLIARWHGTEQGR 585

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           LL+ L  +      W    +            +L+  +R R L +     + + +++T++
Sbjct: 586 LLRALAEKE-----WLIVADNLEQQFFDTIT-SLSARQRERSLEQLLR--KSRQSELTSE 637

Query: 609 GEAEKTAILIS 619
            + +  A+L  
Sbjct: 638 EKTQLLALLSR 648


>gi|302185956|ref|ZP_07262629.1| DNA primase [Pseudomonas syringae pv. syringae 642]
          Length = 651

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 180/668 (26%), Positives = 294/668 (44%), Gaps = 76/668 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF+  +   + PL D  +++ T+     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442
            LR    Q + +      +                                        +
Sbjct: 409 NLRILMRQRLTEITGLSGEAVSQLVQSAPAEAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499
                +      + +       +  +    + +  + P+  E    A L TL++HP + +
Sbjct: 469 QEWTQKKTGGQNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +  +  +    ++    +L   L     +       ++  R      G LL+ L  +   
Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
              W    +            +L+  +R R L     +  +           E +A    
Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631

Query: 620 ILHEVHIQ 627
            L E+  +
Sbjct: 632 QLRELLNR 639


>gi|302391477|ref|YP_003827297.1| DNA primase [Acetohalobium arabaticum DSM 5501]
 gi|302203554|gb|ADL12232.1| DNA primase [Acetohalobium arabaticum DSM 5501]
          Length = 616

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/626 (27%), Positives = 289/626 (46%), Gaps = 34/626 (5%)

Query: 1   MNY-PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M Y   +FI  +  +  I ++I  Y + ++   N     Y A CPFHDE+TPSF  N  K
Sbjct: 1   MAYLNDEFIDKVRDNNDIIDVISDYTNLEKAGKN-----YKALCPFHDERTPSFMVNPEK 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
             Y+CF C V G+  +F+  +    FIE+V+ LA   G+ LP        +   ++++  
Sbjct: 56  QLYHCFGCGVGGNVFNFMMDIENLDFIEAVEILAQRIGLSLPERKDSSTGESTTKSEIYE 115

Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           +   A  FF++ L    +    + YL +RGI    I+ F+LGYAPDS   L + LR+KG+
Sbjct: 116 IHNWAVKFFNYLLTETNQGSEAYEYLRQRGIKEETIDQFELGYAPDSWRGLFDFLRKKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S ++I +AGL+I        YDRFRNR+IF I + RGQ I FGGR        KYLNSP+
Sbjct: 176 SADRIQQAGLIIPQKKGKGYYDRFRNRIIFTINNLRGQAIGFGGRV-VDDSHPKYLNSPQ 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F+K   LY    A   +++          S  +++VEGY DV++  Q G++N+V+SL
Sbjct: 235 TPVFNKKNILYGLARAKREIKR----------SGSVVIVEGYTDVITGHQFGIENIVASL 284

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT+ Q RLL + + R+ + +DGD  G  A  +  ++       G  V  V L   +D
Sbjct: 285 GTSLTKSQARLLRRYADRVYIAYDGDVAGENATLRGFNI---LKNTGLEVYVVNLPVDQD 341

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD  IR  GK  FE L+ E++ L++   +    +R     +++ E    +   +  I+++
Sbjct: 342 PDEVIRSQGKEEFELLLSEAVSLIEFKLESLLTDRDLTKIEQKVEAVDDIMPVLAGIENE 401

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +  Y + I  RL        +    + +   +  R+   +    +       + +   
Sbjct: 402 IKQAEYIKKIAGRLDVETGVIKSRLKKFQQDVSEQDRNYRDRNNKFKSDSKVDSEAESDT 461

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +    E  LL  +I    IL     EL    +  +E Q     +F           EE+ 
Sbjct: 462 QFQF-EKKLLELMIKDTQILNLVKAELDSDEFITDEYQSAAELIFDI----DNSDWEELI 516

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            ++      +++ +    V              ++  +GY + +    +   L  +KE +
Sbjct: 517 NKVNSAEIRQMITE----VSLGNYQKEEINEYQLEEAKGYIKKI----KEYQLKMKKERL 568

Query: 599 EKQIAQVTAKGEAEKTAILISILHEV 624
           + +I Q  A  +  K   L+    EV
Sbjct: 569 DAEIEQHEASRDFAKVNQLLRERQEV 594


>gi|261405622|ref|YP_003241863.1| DNA primase [Paenibacillus sp. Y412MC10]
 gi|261282085|gb|ACX64056.1| DNA primase [Paenibacillus sp. Y412MC10]
          Length = 605

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/631 (23%), Positives = 275/631 (43%), Gaps = 37/631 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           N P D I+++L    I + + +YV   ++            CPFH EKTPSF     +  
Sbjct: 7   NIPDDVIEEVLAKSDIVDTVSKYVHLTKQGK-----YLKGLCPFHSEKTPSFTVTPERQI 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-EKKEKIQTDLIRL 120
           +YC+ C   G+ + F   + G SF E+V+ +A    + LP         +   +  LI  
Sbjct: 62  FYCYGCGKGGNAIKFRMEIEGFSFPEAVKTMAEENDISLPEGQGVPVIPRNPEKERLIEA 121

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E++   +H  LKN         YL  RG++   I+ F++GYAPD   +L + L ++ F 
Sbjct: 122 YELSAKLYHFLLKNTEHGTEAMKYLRARGMNDKMIDQFQIGYAPDRWDTLVQFLTKRSFD 181

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            +++   GLL          DRFR R++FPI    G+VIAF GR L      KYLNSPET
Sbjct: 182 LKEMERGGLLSARHEQEGYLDRFRGRIMFPIHDRSGKVIAFAGRIL-GDGQPKYLNSPET 240

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           +LF+K + LYN   A   ++K             I+L EGY DV+S  +AG+ N V+++G
Sbjct: 241 LLFNKSRTLYNLHQAKTSIRKL----------RQILLFEGYGDVISSWEAGLHNGVATMG 290

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LTE Q+ ++  ++  +V+ +DGD  G+ AA K I +       G +V   L++ G DP
Sbjct: 291 TSLTENQVAIMKSVAEEVVVVYDGDKAGMAAASKVIPM---LEGVGLKVRIALVNEGMDP 347

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +IR +G   F  ++  ++           +N      D +          I  +    
Sbjct: 348 DDYIRKFGPERFRHVVETAVSTTKFKLIYLKKNHILLEEDGKIAYAKEALPIIAVLDSST 407

Query: 420 LRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            R  Y + +   L   ++    +        +    +  +++++  + R  +       L
Sbjct: 408 EREVYLRELSSELHLSYESLKQDCNLLRQSMQKKMGDGDNKEKRWNNGRHKKGRQPAPAL 467

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++      +     L +  ++  +   + ++L++ + + K      
Sbjct: 468 LPAYHAAERRLLSLMLQDAEAARYVGDRLGE-AFNIEDHAAIAAYLYAFYAQGKSPDISR 526

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
               L +        +L+  V    +  A  E N+  +    ++ L   ++     R+ +
Sbjct: 527 FMSSLQD-------DRLEMTVSSIMMMEAPAEWNVQVLDDCIREVLKFPQQ-----REID 574

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           + ++++ +    G+  + A + S +  +  Q
Sbjct: 575 QKKEEMIKAERSGDFLRAAQIASEIIALERQ 605


>gi|218701837|ref|YP_002409466.1| DNA primase [Escherichia coli IAI39]
 gi|218371823|emb|CAR19678.1| DNA primase [Escherichia coli IAI39]
          Length = 581

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/630 (28%), Positives = 301/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L +     I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSMLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|83859450|ref|ZP_00952971.1| DNA primase [Oceanicaulis alexandrii HTCC2633]
 gi|83852897|gb|EAP90750.1| DNA primase [Oceanicaulis alexandrii HTCC2633]
          Length = 612

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 196/591 (33%), Positives = 295/591 (49%), Gaps = 14/591 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P  F  ++   I  S LIG+ V   R+       ++    PF  E+TPSF  ND KG
Sbjct: 1   MAIPDGFKDEIKARIRPSELIGRTVALKRQGR-----EFVGLSPFKKERTPSFFVNDEKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF+    GD  ++L    G SF+E+++ LA  AG+ +P ++ +  K+E+ +  L+  
Sbjct: 56  FYHCFASQEHGDIFTWLQKTQGLSFMEAIEALAQEAGLEVPRMEQRDPKQEERRKTLLDW 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           I +A D+F  SL     +    YL+ RG+    +E F LG+APD+R  L   L QKG + 
Sbjct: 116 IALAQDYFARSLFAPEGEEARIYLERRGLSRSDMERFGLGFAPDNRRGLTRALIQKGATA 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++ EAGL I  ++    YDRFR R++FPI+ +R +++AFGGR +SK    KYLNSPET 
Sbjct: 176 QELSEAGLSILPEDGGEPYDRFRGRVMFPIKDARDRLVAFGGRAMSKEVRAKYLNSPETE 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LY +  A  +      K         +I+ EGYMDV++  +AG+   V+ LGT
Sbjct: 236 LFHKGSLLYRYPEARAFAHDPKVKARG------LIVAEGYMDVIAFARAGLGQAVAPLGT 289

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QLRLLW+  P  V+C DGD  G RAA  A +  L  L PG  + FV L  G+DPD
Sbjct: 290 ALTENQLRLLWRAGPEPVVCLDGDAAGTRAAALAAERALELLEPGRTLRFVFLPDGQDPD 349

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G  A +  I ++ PL+D+LW+RE E    + PD RA     +K  +  IKD  +
Sbjct: 350 DLLREQGAQALKDAIADARPLIDVLWRREVELEPLDDPDRRAGFRKRIKALVARIKDPDI 409

Query: 421 RYYYSQAIRDRLQQLFQKYITE-HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           +  Y      R++ LF +         G+      R   ++  + +   + LV  +  K 
Sbjct: 410 KAEYRAEFDQRIETLFGRAPQAGFRAEGQRGGYGGRAAGRRFNALQPPTAELVAQRKQKP 469

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           P      LLL +I +P I + + + L  + +    L  L   +       +      +  
Sbjct: 470 PPASARQLLLAVIEYPEIAEAEAETLLQMSFGT--LDSLRDAILDACFSGEPLPVGGLRD 527

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            L  RGF   L +L             +EA+     + +++  A Y     
Sbjct: 528 ALSRRGFAPQLTRLAVDRSPMRASLGGSEADADSRLEAWRRLSASYMERVA 578


>gi|306816580|ref|ZP_07450712.1| DNA primase [Escherichia coli NC101]
 gi|305850145|gb|EFM50604.1| DNA primase [Escherichia coli NC101]
          Length = 581

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADRNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|66047867|ref|YP_237708.1| DNA primase [Pseudomonas syringae pv. syringae B728a]
 gi|63258574|gb|AAY39670.1| DNA primase [Pseudomonas syringae pv. syringae B728a]
          Length = 651

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/668 (26%), Positives = 288/668 (43%), Gaps = 76/668 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF+  +   + PL D  +++ T+     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQL---------------------------------------FQKY 439
            LR    Q + +                                            ++  
Sbjct: 409 NLRILMRQRLTEITGLTGEAVSHLVQSAPAEAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
                       +        G   +         ++         A L TL++HP + +
Sbjct: 469 QEWTQKKTGGQNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +  +  +    ++    +L   L     +       ++  R      G LL+ L  +   
Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
              W    +            +L+  +R R L     +  +           E +A    
Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631

Query: 620 ILHEVHIQ 627
            L E+  +
Sbjct: 632 QLRELLNR 639


>gi|283836398|ref|ZP_06356139.1| DNA primase [Citrobacter youngae ATCC 29220]
 gi|291067772|gb|EFE05881.1| DNA primase [Citrobacter youngae ATCC 29220]
          Length = 581

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 176/630 (27%), Positives = 295/630 (46%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDKLEFVETVEELAAMHNLEVPYEAGSGPSQIERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL          YL++RG+ S  I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLMQPAATPARQYLEKRGLSSDVITRFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +++AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L      KYLNSPET
Sbjct: 179 RKSLVDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A        R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNADPQR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++LPL   L+         +TPD RA+L       I  +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQALPLSAFLFNSLLPQVDLSTPDGRAQLSTLALPLITQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +                     P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERLMPKLAEN-------GASRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +         L   +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPGLAPLVPPLGALDSNKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + +I    + +  +L  +    +L  ++EE
Sbjct: 504 LEHYRGTNDAATLEKL-------SMWDDIADKDI--AEKTFTDSLN-HMFDSMLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T    +E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSSEERRELWTLNQELAKK 581


>gi|323966595|gb|EGB62028.1| DNA primase [Escherichia coli M863]
 gi|327251852|gb|EGE63538.1| DNA primase [Escherichia coli STEC_7v]
          Length = 581

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 177/630 (28%), Positives = 299/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +                     P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKTAESSVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADRNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|82778396|ref|YP_404745.1| DNA primase [Shigella dysenteriae Sd197]
 gi|309785375|ref|ZP_07680006.1| DNA primase [Shigella dysenteriae 1617]
 gi|81242544|gb|ABB63254.1| DNA primase [Shigella dysenteriae Sd197]
 gi|308926495|gb|EFP71971.1| DNA primase [Shigella dysenteriae 1617]
          Length = 581

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNTATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|332998669|gb|EGK18265.1| DNA primase [Shigella flexneri VA-6]
          Length = 581

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R+IFPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVIFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTSGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|323188490|gb|EFZ73775.1| DNA primase [Escherichia coli RN587/1]
          Length = 581

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKQAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|331648867|ref|ZP_08349955.1| DNA primase [Escherichia coli M605]
 gi|281180120|dbj|BAI56450.1| DNA primase [Escherichia coli SE15]
 gi|330909132|gb|EGH37646.1| DNA primase [Escherichia coli AA86]
 gi|331042614|gb|EGI14756.1| DNA primase [Escherichia coli M605]
          Length = 581

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVAMSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|82545321|ref|YP_409268.1| DNA primase [Shigella boydii Sb227]
 gi|81246732|gb|ABB67440.1| DNA primase [Shigella boydii Sb227]
 gi|332092180|gb|EGI97258.1| DNA primase [Shigella boydii 3594-74]
          Length = 581

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 177/630 (28%), Positives = 299/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+   L+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQYLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|293416505|ref|ZP_06659144.1| DNA primase [Escherichia coli B185]
 gi|291431861|gb|EFF04844.1| DNA primase [Escherichia coli B185]
          Length = 581

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/630 (28%), Positives = 301/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY F+ A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGFYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|323978860|gb|EGB73940.1| DNA primase [Escherichia coli TW10509]
          Length = 581

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESSVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADRNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|241762242|ref|ZP_04760324.1| DNA primase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373289|gb|EER62908.1| DNA primase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 628

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/636 (28%), Positives = 299/636 (47%), Gaps = 44/636 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P +F+ +L   I +S+LIG+ V   R        ++ ACCPFH+EKTPSF+ ND KGFY
Sbjct: 7   LPPEFLDELRQRITLSSLIGRTVKLTRAGR-----EFRACCPFHNEKTPSFYVNDEKGFY 61

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F++   G SF+++V+ LA  AG+ +P  +P   ++ K    L  ++ 
Sbjct: 62  HCFGCGAHGDAIRFVTETRGLSFMDAVRELAGQAGMDIPEANPAAVRQAKRTATLHDIMA 121

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F   L       +  YLD RGI     + F LG+AP+ R  L+  L      +  
Sbjct: 122 EAAKWFSEQLHGIEGAEVRRYLDNRGISPAIAQNFGLGFAPNGRGRLKNALSHHAVEKLI 181

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--------KGESVKYL 234
            +   + ++G +    YDRFR RL+ PI+  RG+VIAFGGR L            S KYL
Sbjct: 182 EVGLLISVEGRD---PYDRFRGRLMIPIKDQRGRVIAFGGRRLESIEGGNSLPDNSPKYL 238

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET LF KG+ LYN   A    ++  R          II+VEGY+DV+ L QAG+   
Sbjct: 239 NSPETPLFDKGRTLYNIDKASQAARRQNR----------IIVVEGYLDVIGLAQAGIHEA 288

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+ LGTALTE+Q+  LW++  + +LCFDGD  G +AA +A +  L    PG  ++FV L 
Sbjct: 289 VAPLGTALTEHQIERLWRIEDKPILCFDGDSAGQKAAVRAAERALVQARPGKTLSFVTLP 348

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G+DPD  ++  GK+AFE+++   + L  +L++ E       +P+ RA L   L      
Sbjct: 349 NGKDPDDLVKEQGKSAFEEVLSRPIALDRLLYRFEASQIDPRSPEGRAALSKRLDELAAS 408

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
            +D+ +   Y    ++   + F             WK   +   Q   +  +  S L   
Sbjct: 409 CRDEFIARGYRSNFKNLFYENFG------------WKSKKQQDSQTTIAATVTLSDLPTP 456

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            +S         +L+ L  +P  ++++ + LA++   + +L+K    L +  + +     
Sbjct: 457 TISDLECQYSRQILIGLSLYPEAIKQRLERLAELAVTDPKLKKWRETLITAVISEPDLDR 516

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           + I   L      ++        +D        +       +     + L    R L+ +
Sbjct: 517 DTIKAILKADANVDI--DTWDIKKDLRFPFTRPDIAPDLAIESLVALIDLVVEERELATE 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           ++++++   +     +  K          +H +   
Sbjct: 575 EQQLKQVFTEERLIADYAKFEAA----QALHRKRRA 606


>gi|260857196|ref|YP_003231087.1| DNA primase DnaG [Escherichia coli O26:H11 str. 11368]
 gi|260869818|ref|YP_003236220.1| DNA primase DnaG [Escherichia coli O111:H- str. 11128]
 gi|257755845|dbj|BAI27347.1| DNA primase DnaG [Escherichia coli O26:H11 str. 11368]
 gi|257766174|dbj|BAI37669.1| DNA primase DnaG [Escherichia coli O111:H- str. 11128]
 gi|323154522|gb|EFZ40722.1| DNA primase [Escherichia coli EPECa14]
 gi|323178772|gb|EFZ64348.1| DNA primase [Escherichia coli 1180]
          Length = 581

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/598 (28%), Positives = 285/598 (47%), Gaps = 46/598 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +          L++L      A       E    D       +L   ++  L++R++
Sbjct: 504 LEHYRGTNNAATLEKLSMWDDIAD--KNIAEQTFTDSLNHMFDSLLELRQEELIARER 559


>gi|71736150|ref|YP_272919.1| DNA primase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556703|gb|AAZ35914.1| DNA primase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320325996|gb|EFW82054.1| DNA primase [Pseudomonas syringae pv. glycinea str. B076]
          Length = 651

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 180/668 (26%), Positives = 294/668 (44%), Gaps = 76/668 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWENLYKHLSSDSLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF+  +   + PL D  +++ T+     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442
            LR    Q + +      +                                        +
Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPVDAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499
                +      + +       +  +    + +  + P+  E    A L TL++HP + +
Sbjct: 469 QEWTPKKTGGQNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +  +  +    ++    +L   L     +       ++  R      G LL+ L  +   
Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
              W    +            +L+  +R R L     +  +           E +A    
Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631

Query: 620 ILHEVHIQ 627
            L E+  +
Sbjct: 632 QLRELLNR 639


>gi|324115355|gb|EGC09319.1| DNA primase [Escherichia fergusonii B253]
          Length = 581

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPQR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADRNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|315181194|gb|ADT88108.1| DNA primase [Vibrio furnissii NCTC 11218]
          Length = 581

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/632 (27%), Positives = 293/632 (46%), Gaps = 63/632 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKVKN-----YSACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--------EKKEKIQ 114
           +CF C V G+ + F+       F E+++ LA+  G+ +P  +               + +
Sbjct: 60  HCFGCGVHGNAIDFMMEYERLEFPEAIEELASFLGLDVPREERSNGGFNKNTPRANSEEK 119

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            +L  L+     F+   LK + ++    YL  RG+    ++ F +GY  D    +R++  
Sbjct: 120 RNLYDLMGSIAQFYRQQLKVSSNRDAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRKNFG 179

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           Q   +++ ++  G+LI+ DN    YDRFR R++FPIR  RG+VI FGGR L    + KYL
Sbjct: 180 QSRHNQDMLVSGGMLIENDNGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKYL 237

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKGK LY  +  L   +              I++VEGYMDV++L Q G+   
Sbjct: 238 NSPETPIFHKGKELYGLYEVLQAYR----------EPPQILVVEGYMDVVALAQYGIDYS 287

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGT+ T   L+LL++ +  +V C+DGD  G  AA++A++  L +L  GN + F+ L 
Sbjct: 288 VASLGTSTTGDHLQLLFRQTNTVVCCYDGDRAGREAAWRALENALSYLKSGNILKFLFLP 347

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            GEDPDS++R YGK AFE+ + E+ PL   L+       +    + +A LE      IN 
Sbjct: 348 DGEDPDSYVRKYGKEAFEQQMHEAEPLSKYLFSNLLSQVNVGNNEGKAALEAMALPLINK 407

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I D+ L+    + +  +            +G  +     +  + +  P + + ++ +   
Sbjct: 408 IPDESLQDQLLKILEQK------------TGIYKKPSLPSDAKSRPQPHKEIKRTPM--- 452

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                       ++  L+ +P+         +        L  L   +  +  +  +   
Sbjct: 453 ----------REVIALLLQNPSYADMVPDLTSVKGLAIPGL-SLLVEVLENCRQYPHIST 501

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            ++ +         LL +L        +     E  +  + +   Q +          +Q
Sbjct: 502 GQLLEHWRNSKNEALLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV---------EKQ 551

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            E ++ +  + +    AE+   L++++ E+  
Sbjct: 552 IENLQAK--ERSVGLSAEEKRELVALMLELKA 581


>gi|331654665|ref|ZP_08355665.1| DNA primase [Escherichia coli M718]
 gi|331048047|gb|EGI20124.1| DNA primase [Escherichia coli M718]
          Length = 581

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/630 (28%), Positives = 301/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+       H YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSAHQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|169830687|ref|YP_001716669.1| DNA primase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637531|gb|ACA59037.1| DNA primase [Candidatus Desulforudis audaxviator MP104C]
          Length = 599

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 170/625 (27%), Positives = 275/625 (44%), Gaps = 40/625 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   ++++     I ++I ++V  ++R  N     Y   CPFH EKTPSF    ++  +
Sbjct: 12  IPETLVEEVFSRTDILDVISEHVRLEKRGRN-----YVGLCPFHQEKTPSFTVTPARQMF 66

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           YCF C V G+   FL      SF ESV+ LA   GV +PV    +  +E+      R+ E
Sbjct: 67  YCFGCGVGGNVFRFLMLKENLSFPESVRFLAGRVGVDIPVT---VSPREEKYERYYRINE 123

Query: 123 VATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A DFF   L+  A   R   YL++RGI     + F+LG+AP    +L   L  KG +  
Sbjct: 124 WARDFFRRRLEAGADAGRARSYLEKRGITPEIRDQFQLGFAPSEWQALTGFLEHKGCTPR 183

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           +++E GL          YDRFRNR+IFP+ ++ G+VI FGGR L      KYLNSPET +
Sbjct: 184 ELVELGLA--ARGDRGYYDRFRNRIIFPVWNASGRVIGFGGRAL-DDSQPKYLNSPETPV 240

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHKG+ LY    A   ++   R           ++VEGY+D ++  Q G++N V+SLGT+
Sbjct: 241 FHKGQVLYALHLARPAMRDEGRA----------VIVEGYLDAIAAHQFGIRNAVASLGTS 290

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT  Q RLL + +  +++ +D D  G+ AA + +DL       G RV  + +  G+DPD 
Sbjct: 291 LTREQGRLLMRYAMEVLIAYDADAAGVAAAIRGLDL---LQELGCRVRVISVPDGKDPDD 347

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           F+R  G   + +L   +  L++    +        T   +      +   +  +  +  R
Sbjct: 348 FLREEGVEGWVRLTQSATSLLEYKLVQIGARTGTATAAGKLAALREIMPNLRALSSEVER 407

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               Q     L   ++   +E   Y R+               + M + L   K S+   
Sbjct: 408 EEGFQIAARALGLTWETIRSE---YVRFAANTQVKWANSDNIAKNMHNILKLTKPSQVRE 464

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             E  LL  ++ +P  L+   QEL +  + +   Q+++        ++  F P  +   L
Sbjct: 465 KTETGLLRLVLQNPPFLETVKQELGEYVFRDARYQRIYDAWLRRR-DRPGFEPALLANYL 523

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +     L            L    T     ++R      +   KR      Q  E+   
Sbjct: 524 EDDDQQVL----------TALMGLETPGEGENLRAELSAYIKAVKRLDH-KEQLRELLND 572

Query: 602 IAQVTAKGEAEKTAILISILHEVHI 626
           +A     G+ ++   L+  + E+  
Sbjct: 573 VAAAEKAGDRDRVNRLMRKIQELSK 597


>gi|283856512|ref|YP_163357.2| DNA primase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|283775517|gb|AAV90246.2| DNA primase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 628

 Score =  380 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 180/636 (28%), Positives = 299/636 (47%), Gaps = 44/636 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P +F+ +L   I +S+LIG+ V   R        ++ ACCPFH+EKTPSF+ ND KGFY
Sbjct: 7   LPPEFLDELRQRITLSSLIGRTVKLTRAGR-----EFRACCPFHNEKTPSFYVNDEKGFY 61

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F++   G SF+++V+ LA  AG+ +P  +P   ++ K    L  ++ 
Sbjct: 62  HCFGCGAHGDAIRFVTETRGLSFMDAVRELAGQAGMDIPEANPAAVRQAKRTATLHDIMA 121

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F   L       +  YLD RGI     + F LG+AP+ R  L+  L      +  
Sbjct: 122 EAAKWFSEQLHGIEGAEVRRYLDNRGISPAIAQNFGLGFAPNGRGRLKNALSHHAVEKLI 181

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--------KGESVKYL 234
            +   + ++G +    YDRFR RL+ PI+  RG++IAFGGR L            S KYL
Sbjct: 182 EVGLLISVEGRD---PYDRFRGRLMIPIKDQRGRIIAFGGRRLESIEGGNSLPDNSPKYL 238

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET LF KG+ LYN   A    ++  R          II+VEGY+DV+ L QAG+   
Sbjct: 239 NSPETPLFDKGRTLYNIDKASQAARRQNR----------IIVVEGYLDVIGLAQAGIHEA 288

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+ LGTALTE+Q+  LW++  + +LCFDGD  G +AA +A +  L    PG  ++FV L 
Sbjct: 289 VAPLGTALTEHQIERLWRIEDKPILCFDGDSAGQKAAVRAAERALVQAHPGKTLSFVTLP 348

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G+DPD  ++  GK+AFE+++   + L  +L++ +       +P+ RA L   L      
Sbjct: 349 NGKDPDDLVKEQGKSAFEEVLSRPIALDRLLYRFQASQIDPQSPEGRAALSKRLDELAAS 408

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
            +D+ +   Y    ++   + F             WK   +   Q   +  +  S L   
Sbjct: 409 CRDEFIARGYRSNFKNLFYENFG------------WKSKKQQDSQTTIAATVTLSDLPTP 456

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            +S         +L+ L  +P  ++++ + LA++   + +L+K    L +  + +     
Sbjct: 457 TISDLECQYSRQILIGLSLYPEAIKQRLERLAELAVTDPKLKKWRETLITAVISEPDLDR 516

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           + I   L      ++        +D        +       +     + L    R L+ +
Sbjct: 517 DTIKAILKADANVDI--DTWDIKKDLRFPFTRPDIAPDLAIESLVALIDLVVEERELATE 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           ++++++   +     +  K          +H +   
Sbjct: 575 EQQLKQVFTEERLIADYAKFEAA----QALHRKRRA 606


>gi|215488397|ref|YP_002330828.1| DNA primase [Escherichia coli O127:H6 str. E2348/69]
 gi|215266469|emb|CAS10907.1| DNA primase [Escherichia coli O127:H6 str. E2348/69]
          Length = 581

 Score =  380 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       FIE+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFIETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|146281107|ref|YP_001171260.1| DNA primase [Pseudomonas stutzeri A1501]
 gi|145569312|gb|ABP78418.1| DNA primase [Pseudomonas stutzeri A1501]
          Length = 650

 Score =  380 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/661 (27%), Positives = 294/661 (44%), Gaps = 70/661 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I  ++G  +   +   N     Y A CPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRSDIVEVVGSRIQLKKTGKN-----YSALCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P  D   K + ++ + + L  L
Sbjct: 60  YCFGCGAGGNALGFVMDHDQLDFPQAVEELAKRAGMEVPREDSGRKHKPRQPVDSPLYPL 119

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A D++  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LAAAADYYRQALKSHPTRKAAVEYLKGRGLSGVIARDFGLGFAPPGWDNLMKHLGGDALQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKALIDAGLLIENAENGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A    +              I++VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLYEARQANRDL----------DEIMVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G +AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDAAGRKAAWRALEATLPNLQDGRRARFLFLPDGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF   +   S PL D  +++ +E     + + +A L       I  I   
Sbjct: 349 DTLVRAEGTDAFRARIQQHSQPLADYFFQQLSEEADPRSLEGKAHLATLAAPLIEKIPGN 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYI-------------------------------------T 441
            LR    Q + +      +                                         
Sbjct: 409 NLRALMRQRLAEITGLNGEALQHMAAAPASAPSSTPTSDDYTYYDASPAYGEPDHFEPPE 468

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK-PSLREAALLLTLINHPAILQE 500
                 R  K   +   +           + +G  +           L TL++HP + Q+
Sbjct: 469 PVQPQPRNGKPGKKEWKKDWKKNGQGPDLMPRGPRTPATVEPPALTTLRTLLHHPELAQK 528

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
             ++++    +++   +L   L     +       ++  R      G LL+ L  +    
Sbjct: 529 V-EDVSHFAAEDDTYAQLLVALLGTLQKNPKLRSLQLIARWHGTDQGRLLRALAEKEWLI 587

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT-AKGEAEKTAILIS 619
                    +  ++ Q +   +      R   R+ E + ++  Q   +  E ++   L+S
Sbjct: 588 ---------SADNLEQQFFDTINSLA-ARQRERRLESLLRKARQGELSAEEKDQLRNLLS 637

Query: 620 I 620
            
Sbjct: 638 R 638


>gi|15803608|ref|NP_289641.1| DNA primase [Escherichia coli O157:H7 EDL933]
 gi|25298043|pir||D85967 DNA biosynthesis, DNA primase [imported] - Escherichia coli
           (strain O157:H7, substrain EDL933)
 gi|12517648|gb|AAG58200.1|AE005536_1 DNA biosynthesis; DNA primase [Escherichia coli O157:H7 str.
           EDL933]
          Length = 581

 Score =  380 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 175/630 (27%), Positives = 294/630 (46%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNXCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L      A       E    D       +L   ++  L++R++  
Sbjct: 504 LEHYRGTNNAATLEKLSMWDDIAD--KNIAEQTFTDSXNHMFDSLLELRQEELIARER-- 559

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                   T     E+   L ++  E+  +
Sbjct: 560 --------THGLSNEERLELWTLNQELAKK 581


>gi|218550315|ref|YP_002384106.1| DNA primase [Escherichia fergusonii ATCC 35469]
 gi|218357856|emb|CAQ90500.1| DNA primase [Escherichia fergusonii ATCC 35469]
          Length = 581

 Score =  380 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPQR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESSVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADRNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|325498619|gb|EGC96478.1| DNA primase [Escherichia fergusonii ECD227]
          Length = 581

 Score =  380 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPQR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESSVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADRNI--AEQTFTDSLN-HMFDSLLKLRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|296104730|ref|YP_003614876.1| DNA primase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059189|gb|ADF63927.1| DNA primase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 581

 Score =  380 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 177/628 (28%), Positives = 298/628 (47%), Gaps = 52/628 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDKLEFVETVEELAAMHNLEVPYEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SLK++  +    YL++RG+    I  F +GYAP    ++ +        
Sbjct: 119 LMDGLNSFYQQSLKHSAAEPARQYLNKRGLSDDVIARFAIGYAPPGWDNVLKRFGGNSED 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L      KYLNSPET
Sbjct: 179 RKSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQANAEPPR----------LLVVEGYMDVVALAQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++++  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRVTKNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         +TPD RA+L       I+ +  + 
Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLMPQVDLSTPDGRAQLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +                     P+ +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKQAENGTVRPAPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +  +              L  L+S L +  + Q      ++ +
Sbjct: 452 -----RILIGLLVQNPELAPQVPSLAGLNHEKLPGLG-LFSELVNTCLSQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                     L++L        +W    + +I    + +  +L  +    +L  ++EE+ 
Sbjct: 506 HYRGTKEAATLEKL-------SMWDDIADKDI--AEKTFTDSLN-HMFDSMLELRQEELI 555

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627
            +  + T    +E+   L  I  E+  +
Sbjct: 556 AR--ERTHGLSSEERRELWMINQELAKK 581


>gi|237729994|ref|ZP_04560475.1| DNA primase [Citrobacter sp. 30_2]
 gi|226908600|gb|EEH94518.1| DNA primase [Citrobacter sp. 30_2]
          Length = 581

 Score =  380 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 176/630 (27%), Positives = 296/630 (46%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDKLEFVETVEELAAMHNLEVPYETGSGPSQIERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL  +       YL++RG+ S  I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLMQSAATPARQYLEKRGLSSDVITRFAIGFAPPGWDNVLKRFGGNAEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +++AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L      KYLNSPET
Sbjct: 179 RKSLVDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A        R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNADPQR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++LPL   L+         +TPD RA+L       I  +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQALPLSAFLFNSLLPQVDLSTPDGRAQLSTLALPLITQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +                     P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERLMPKLAEN-------GASRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +         L   +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPGLAPLVPPLGALDSNKL--PGLG-LFRELVNTCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + +I    + +  +L  +    +L  ++EE
Sbjct: 504 LEHYRGTNDAATLEKL-------SMWDDIADKDI--AEKTFTDSLN-HMFDSMLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T    +E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSSEERRELWTLNQELAKK 581


>gi|218780917|ref|YP_002432235.1| DNA primase [Desulfatibacillum alkenivorans AK-01]
 gi|218762301|gb|ACL04767.1| DNA primase [Desulfatibacillum alkenivorans AK-01]
          Length = 599

 Score =  380 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/628 (24%), Positives = 261/628 (41%), Gaps = 46/628 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
           P D I  +   + I ++I  Y+   +   N     +   CPFH EKTPSF  N  + F++
Sbjct: 6   PDDQISHVRNSVNIVDVISDYMVLKKAGNN-----FVGLCPFHAEKTPSFSVNPDRQFFH 60

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIRLI 121
           CF C   GD   F+      +F E++  LAA AG+ L    + P+ +K    +  L    
Sbjct: 61  CFGCGEGGDVFDFVMRQNNLTFPEALASLAARAGIELAPRKMTPQQQKIVAERDALYAAN 120

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           + A DFF  SL   +  +   YL +R +    +E F LG+APD   +L   L+ KG    
Sbjct: 121 DFARDFFVKSLNAPQASQAREYLKKREMPQEVLETFMLGFAPDEWRALSGFLQGKGVPSH 180

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           +  +AGLL+  +     YDRFRNR+IFPI    G++  FGGR +      KYLNSP+T +
Sbjct: 181 RAEKAGLLVHKEGGGNVYDRFRNRIIFPIHDISGRIAGFGGRVM-DDALPKYLNSPQTPI 239

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           + K + LY  + A    +K          +    +VEGY DVL+L   G++N V++ GTA
Sbjct: 240 YDKKRMLYGLYQARQECRK----------TGVAFMVEGYFDVLALYAHGIRNAVATCGTA 289

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           L+   +R++   + ++VL FD D  G+ AA K++ L         +   ++L  G DPDS
Sbjct: 290 LSPDHVRIIKGYAKKVVLVFDSDTAGINAARKSLPLFEAEK---VQAKVLVLPAGHDPDS 346

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           F+R +G   F +       ++  L +         + + +A +   +K  +  + D   R
Sbjct: 347 FVRDFGAKDFLEAAENRQDMIPFLMESAIAR-HGLSIEGKANVVAEIKEQVAAVSDGVTR 405

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y + I ++L       +       +   K                           P 
Sbjct: 406 SLYIKQIAEKLGVDEAAVLDAVRDAAKTRPKR----------LPGTVHEEQAKPAEPAPD 455

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             E A+L  ++  P    +  ++     + +N ++ L   +              I    
Sbjct: 456 RMETAILQMMVRCPECAPKVAEKRLIKYFSSNRVRALGLRILEFIQAGGDPEGAGIMSLA 515

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            E+    LL ++        L           +   ++Q++              E++++
Sbjct: 516 VEQDDRSLLARILAHDDPLELPGCMA------IIDQFEQSITRRNH--------AELDRR 561

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIH 629
           I Q   +G  +    L+   +E+   + 
Sbjct: 562 IQQAQTEGHHDLALRLLVEKNELLKALQ 589


>gi|312968591|ref|ZP_07782800.1| DNA primase [Escherichia coli 2362-75]
 gi|312286809|gb|EFR14720.1| DNA primase [Escherichia coli 2362-75]
          Length = 581

 Score =  380 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/630 (28%), Positives = 299/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       FIE+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFIETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L    + KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNNTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|283787202|ref|YP_003367067.1| DNA primase [Citrobacter rodentium ICC168]
 gi|282950656|emb|CBG90328.1| DNA primase [Citrobacter rodentium ICC168]
          Length = 582

 Score =  380 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 177/625 (28%), Positives = 294/625 (47%), Gaps = 52/625 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDTRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL          YL++RG+ S  I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLMQPAATPARQYLEKRGLSSEVIARFAIGFAPPGWDNVLKRFGGNSEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L      KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A        R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNADPQR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++LPL   L+         +TPD RA+L       I  +  + 
Sbjct: 347 DTLVRKEGKAAFEARMEQALPLSAFLFNSLLPQVDLSTPDGRAQLSTLALPLITQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +                     P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKLSENGPSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +                 L  L++ L +  + Q      ++ +
Sbjct: 452 -----RILIGLLVQNPELAPLVPPLGGLDHNKLPGLG-LFAELVNTCLSQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                     L++L        LW    + +I    + +  +L  +    +L  ++EE+ 
Sbjct: 506 HYRGTKDAATLEKL-------SLWDDIADKDI--AEKTFTDSLN-HMFDSMLELRQEELI 555

Query: 600 KQIAQVTAKGEAEKTAILISILHEV 624
            +  + T    +E+   L ++  E+
Sbjct: 556 AR--ERTHGLSSEERRELWTLSQEL 578


>gi|260773556|ref|ZP_05882472.1| DNA primase [Vibrio metschnikovii CIP 69.14]
 gi|260612695|gb|EEX37898.1| DNA primase [Vibrio metschnikovii CIP 69.14]
          Length = 587

 Score =  380 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/636 (27%), Positives = 292/636 (45%), Gaps = 65/636 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE----------K 112
           +CF C V G+ + FL       F E+++ LA+  G+ +P  +     +            
Sbjct: 60  HCFGCGVHGNAIDFLMEYERLEFPEAIEELASYLGLEVPREERYNNSQSASNSTPRVNND 119

Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172
            +  L  L+     F+   LK    +    YL +RG+     + F +GY PD    +R +
Sbjct: 120 EKRTLYDLLSNIAQFYRQQLKTPAGRGAIEYLKDRGLSGDIAQQFGIGYVPDEWDLIRRN 179

Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
             Q   ++E ++  G+LI+   S   YDRFR R++FPIR  RG+VI FGGR +  G + K
Sbjct: 180 FGQHPQAQEMLVTGGMLIEN-ESGKRYDRFRGRVMFPIRDRRGRVIGFGGRVIGNG-TPK 237

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPET +FHKGK LY  +  +   +  +           I++VEGYMDV++L Q GV 
Sbjct: 238 YLNSPETPIFHKGKELYGLYEVMQAHRDPV----------QILVVEGYMDVVALAQYGVD 287

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
             V+SLGTA T   L+LL++ +  +V C+DGD  G  AA++A++  L +L  GN + F+ 
Sbjct: 288 YAVASLGTATTGDHLQLLFRQTNTVVCCYDGDRAGREAAWRALENALSYLKSGNILKFLF 347

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKN 410
           L  GEDPDS+IR +GK  FE  +  + PL   L++   E    N  T + ++ L      
Sbjct: 348 LPDGEDPDSYIRKHGKENFEHAVQHAKPLSSYLFENLIETHKLNLGTVEGKSTLRTLANE 407

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            IN I D   +    Q + ++L +L               ++     ++  P + L ++ 
Sbjct: 408 LINKIPDIGFQ----QELDEKLDKLTGFM------SHGKQRRTQPTSERPQPHKELKRTP 457

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
           +               ++  L+ +P+  +   +  +        L  L + +  +  +  
Sbjct: 458 M-------------REVIALLVQNPSYAEMVPELSSVKHLAIPGLSLLVN-VVENCQQHP 503

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
           +    ++ +         LL +L        +     E  +  + +   Q +        
Sbjct: 504 HITTGQLLEHWRNNEHEALLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV-------- 554

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
             +Q E ++ +  + +     ++   LI+++ E+  
Sbjct: 555 -EKQIENLQAK--ERSVGLSTDEKRELIALMLELKA 587


>gi|172087762|ref|YP_205635.2| DNA primase [Vibrio fischeri ES114]
 gi|171902350|gb|AAW86747.2| DNA primase [Vibrio fischeri ES114]
          Length = 587

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/632 (26%), Positives = 293/632 (46%), Gaps = 57/632 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI +LL    I ++I   V   ++  N     Y ACCPFH+EK+PSF  +  K FY
Sbjct: 5   IPRSFIDELLNRHDIVDIIDARVKLKKQGKN-----YGACCPFHNEKSPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114
           +CF C V G+ + FL       F+E+++ LA++ G+ +P                  + +
Sbjct: 60  HCFGCGVHGNAIDFLMEFDRLEFVEAIEELASMLGLDVPREQRSGFNAPSSGPTANSEQK 119

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  L+   + F+   LK+A +     YL +RG+    ++ F +GY  D    ++ +  
Sbjct: 120 RSLYDLMGGISQFYRSQLKSAANIHAINYLKDRGLSGEIVQKFGIGYIADEWELVKNNFG 179

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           +   S++ ++  G+LI+ DN    YDRFR R++FPIR  RG+VI FGGR + +G + KYL
Sbjct: 180 RDKASQDALVSGGMLIESDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGRVIGEG-TPKYL 237

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKGK LY  + AL                   ++VEGYMDV++L Q GV   
Sbjct: 238 NSPETPIFHKGKELYGLYEALQA----------YKDLPQALVVEGYMDVVALAQYGVDYA 287

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGTA T   ++LL++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L 
Sbjct: 288 VASLGTATTGDHMQLLFRPTSTVVCCYDGDRAGREAAWRAMEQALPYLNDGRQLKFMFLP 347

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            GEDPD++IR YGK AFE+ +  +  L++ +++   +    +T + +A+L       I+ 
Sbjct: 348 DGEDPDTYIRQYGKEAFEQEVANAESLINFMFRTLVDQIDTSTREGKAKLTTLAVPLIDK 407

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           +    LR Y  + +   L  L +  + +              +      +R+ Q  + + 
Sbjct: 408 VPGGTLRLYLREQLGKTLGILDESQLQQLI-----------SKQGAVEPKRIAQPEIKRT 456

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            +          ++  L+ +P + Q      +        L  L+  L        +   
Sbjct: 457 AM--------REVITLLLQNPELAQLVPDLESVKEIPLPGL-SLFLQLLESCRHNPHITT 507

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + +        +LL +L              +  +  +     Q +          +Q
Sbjct: 508 GLLLEHWRGDKNEKLLSRLAAWELPID-QDNIQDVFMDSLDSVLAQCIN---------QQ 557

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            E ++ +  + T     E+   L++++ E+  
Sbjct: 558 IESLQTK--ERTLGLSVEEKRELLALMLELKA 587


>gi|148979374|ref|ZP_01815480.1| DNA primase [Vibrionales bacterium SWAT-3]
 gi|145961810|gb|EDK27103.1| DNA primase [Vibrionales bacterium SWAT-3]
          Length = 583

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 176/632 (27%), Positives = 293/632 (46%), Gaps = 61/632 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQTD 116
           +CF C V G+ + F+       F+E+++ LA+  G+ +P      E         + + +
Sbjct: 60  HCFGCGVHGNAIDFIMEFERLEFVEAIEELASFLGLDVPREQRSGEISTAPRANTEQKRN 119

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L+   + F+   LK A +K    YL  RG+    ++ F +GY  D    +R++  Q+
Sbjct: 120 LYDLMGAISQFYRSQLKIAANKPAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRKNFGQQ 179

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
             +++ ++  G+LI+ D     YDRFR R++FPIR  RG+VI FGGR L +  + KYLNS
Sbjct: 180 KEAQDMLVTGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-EDGTPKYLNS 237

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +FHKGK LY  +  L   +              +++VEGYMDV++L Q GV   V+
Sbjct: 238 PETPIFHKGKELYGLYEVLQAYR----------EPPQVLVVEGYMDVVALAQYGVDYSVA 287

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T   +++L++ +  ++ C+DGD  G  AA++A++  L +L  GN + F+ L  G
Sbjct: 288 SLGTSTTGDHIQMLFRQTSTVICCYDGDRAGKEAAWRALENALEYLKTGNTLKFLFLPDG 347

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCINH 414
           EDPDS+IR +GK AFE+L+  + PL   L+    E    N  T + ++ L  H    IN 
Sbjct: 348 EDPDSYIREHGKAAFEQLVQNATPLSTYLFDNLIEIHKLNLGTTEGKSALRAHASALINK 407

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I D      Y Q + ++L       + E +G+    ++   H     P            
Sbjct: 408 IPDS-----YFQELLEKL-------LDERTGFDNQLRRARVHTQNPTPQPHKELKRTPM- 454

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                       ++  LI +P+         +        L  L+  +        +   
Sbjct: 455 ----------REVIALLIQNPSYADMVPDLSSVKGLPLPGL-SLFVEVLDKCHAHPHINT 503

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            ++ +   +     LL +L              +  +  + +   Q +          +Q
Sbjct: 504 GQLLEHWRDNKHEALLSRLASWEIPLD-EDNQEDIFLDSLDKILAQCV---------EKQ 553

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            E ++ +   V     AE+   L++++ ++  
Sbjct: 554 IENLQAKARSVGLS--AEEKRELLALMLDLKA 583


>gi|323484376|ref|ZP_08089743.1| hypothetical protein HMPREF9474_01494 [Clostridium symbiosum
           WAL-14163]
 gi|323692388|ref|ZP_08106624.1| DNA primase [Clostridium symbiosum WAL-14673]
 gi|323402370|gb|EGA94701.1| hypothetical protein HMPREF9474_01494 [Clostridium symbiosum
           WAL-14163]
 gi|323503528|gb|EGB19354.1| DNA primase [Clostridium symbiosum WAL-14673]
          Length = 596

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/633 (25%), Positives = 274/633 (43%), Gaps = 43/633 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP + I+++ +   I ++I  YV   ++  N     Y+  CPFH EK+PSF     K 
Sbjct: 1   MYYPEEVIEEVRMRSDIVDVISGYVKLQKKGAN-----YFGLCPFHHEKSPSFSVAPQKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            Y+CF C V G+ ++F+      SF E+V+ LA   GV LP      + + +  ++  L+
Sbjct: 56  MYHCFGCGVSGNVITFVMEYENYSFREAVEMLAGRCGVKLPKMEYSKEAKAQADLKAALL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + + A ++F++ LK  + +  + YL  R +    I  F LGY+  +   L  +LR KG+
Sbjct: 116 EINKQAANYFYYQLKQPQGRAGYDYLQRRQLTDETIRRFGLGYSNKTSDDLYRYLRGKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            +  + E GL+        S D+F NR++FPI     +VI FGGR +      KYLNSPE
Sbjct: 176 DDTILKETGLVTI--EERGSRDKFWNRVMFPIMDVNNRVIGFGGRVM-GDGEPKYLNSPE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF K +NLY    A    QK            FI+L EGYMDV+S+ QAG  N V+SL
Sbjct: 233 TKLFDKSRNLYGLNYARTSRQK------------FILLCEGYMDVISMHQAGFTNAVASL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA+TE    LL + + +++L +D D+ G++AA +AI +       G     + +   +D
Sbjct: 281 GTAMTEQHAALLKRYTEQVILTYDSDNAGVKAALRAIPI---LKNAGISAKVLNMRPYKD 337

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD F++  G   F+K I  +            E      P+++ +        +    + 
Sbjct: 338 PDEFMKNLGPEEFKKRIENARNSFLFEIDVLKEGCDMQDPEQKTDFYNKAARKLLDFPEA 397

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYG-RYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             R  Y QA+       ++   T  +  G R      R R+  G      +      K  
Sbjct: 398 LERDNYIQAVSREFFINYENLKTLVNQLGNRLGMGAGRTREPGGEESAANRPGAPAKKKE 457

Query: 478 KKPSLR--EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           K+  +R  E  LL  LI  P +  + +  +    +     ++    +F    +       
Sbjct: 458 KEEGIRKSERLLLTWLIEEPELFDKIHGIIGPADFVKPLYREAAQMVFDGHEKGDVNPAS 517

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            ++  + + G    +  L     +  L +   +    +                +L  +K
Sbjct: 518 ILNHFIDDEGNYREVAALFNASLEESLSNEEQKKAFSE---------------TVLRIKK 562

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             ++ QI       E +K     + L  +HI +
Sbjct: 563 NSLDHQIRHAEGLDELQKLIRDQAELANLHISL 595


>gi|308174310|ref|YP_003921015.1| DNA primase [Bacillus amyloliquefaciens DSM 7]
 gi|307607174|emb|CBI43545.1| DNA primase [Bacillus amyloliquefaciens DSM 7]
 gi|328554256|gb|AEB24748.1| DNA primase [Bacillus amyloliquefaciens TA208]
 gi|328912653|gb|AEB64249.1| DNA primase [Bacillus amyloliquefaciens LL3]
          Length = 603

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/633 (24%), Positives = 288/633 (45%), Gaps = 38/633 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + +  +     I  +IG YV   ++  N     Y+  CPFH E TPSF  +  K  
Sbjct: 4   RIPDEVVNQVQQSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGENTPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118
           ++CF C   G+  SFL  + G SF E+V  LA    +  P           +   +  + 
Sbjct: 59  FHCFGCGAGGNVFSFLRQMEGYSFTEAVSHLADKYQIDFPDDITIHSASRPESSGEHKMA 118

Query: 119 RLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              E+   F+HH L N +  +    YL  RG     I+ F++GYA DS   + + L+++G
Sbjct: 119 EAHELLKKFYHHLLMNTKEGQEALDYLLSRGFTKELIDEFEIGYALDSWDFMTKFLKKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           F EE++ +AGLLI  ++ +  +DRFRNR++FPI    G V AF GR L   +  KY+NSP
Sbjct: 179 FEEEQMEKAGLLIRREDGSGYFDRFRNRIMFPIHDHHGAVAAFSGRAL-GSQQPKYMNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LFHK K LYNF  A   ++K  R           +L EG+ DV+S   +GV+  +++
Sbjct: 238 ETPLFHKSKLLYNFHKARLPIRKEERA----------VLFEGFADVISAVSSGVKESIAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT+LTE  +++L +    ++LC+D D  G  A  KA  L         +V   ++  G 
Sbjct: 288 MGTSLTEEHVKILRRNVQEVILCYDSDKAGYEATLKAAGL---LQKADCKVRVCMMPDGL 344

Query: 358 DPDSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD +IR  G   F+  +I  S+ ++    +   + ++ +   +R      +   I+ + 
Sbjct: 345 DPDDYIRTRGGEKFKTDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYMKEVLKEISALS 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               +  Y + +        +    + S Y R      ++ + +    R+   +  + +L
Sbjct: 405 GSLEQEMYVKQLASEFSLSVESLTEQLSIYARQNAPGDKNAEPQTRRARVTTKA-KRRRL 463

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++    ++++  + +    ++ +  + L ++L++ + E     P+ 
Sbjct: 464 RPAYENAERLLLAHMLRDRNVIKKVIERVG-FEFNIDGHRALAAYLYAVYEEGAEMTPQH 522

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +  R+ +    +LL  +       G+     E +  ++    ++ L  ++++ +     +
Sbjct: 523 LMARMQDEEISQLLSDI-------GMLQVNEELSEAELSDYVKKVLD-HRKWSM----IK 570

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           E E + A    + +  K A L   +  ++  + 
Sbjct: 571 EKEAERADAERQKDFVKAASLAQEIVALNRSLK 603


>gi|254424595|ref|ZP_05038313.1| DNA primase catalytic core, N-terminal domain family [Synechococcus
           sp. PCC 7335]
 gi|196192084|gb|EDX87048.1| DNA primase catalytic core, N-terminal domain family [Synechococcus
           sp. PCC 7335]
          Length = 647

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 159/651 (24%), Positives = 283/651 (43%), Gaps = 35/651 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D I ++     I +++ + V   ++       D+   CPFHD+K+PSF  + SK FY
Sbjct: 6   IHPDTIDEVRQRADIVDIVSEQVVLKKQGK-----DFVGLCPFHDDKSPSFSVSPSKQFY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDLI 118
           YCFSC   G+   FL  L   SF + V  LA    VP+   +P  +++ +     +  L 
Sbjct: 61  YCFSCGAGGNAFKFLMELGQRSFADVVLDLARRYQVPVKTTEPAQQQELQRKLTLREQLY 120

Query: 119 RLIEVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQK 176
            ++ +A  F+ H+L     K+   Y  DER +    I  F++GYAP+   +L  + + QK
Sbjct: 121 EIVAIAAKFYEHALFQPDGKQALAYLRDERLLSDETISHFQIGYAPEGWQTLYGYLVDQK 180

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    + +AGL++        YDRFR+R++ PI  ++ ++I FGGR L+     KYLNS
Sbjct: 181 RYPVGLVEQAGLIVPRKEGTGYYDRFRDRIMVPIHDAQNRLIGFGGRGLTAEAKPKYLNS 240

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET LF KGK LY    A   + K  R           I+VEGY DV++L  AG+ N V+
Sbjct: 241 PETELFDKGKTLYGLDKAKAAIAKQDRA----------IVVEGYFDVIALHAAGITNAVA 290

Query: 297 SLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVLL 353
           SLGTAL   Q++LL + +   +I+  FD D  G++AA +AI ++         ++  + +
Sbjct: 291 SLGTALNAAQVKLLLRYTESKQIIFNFDADAAGIKAAERAIGEVAEMAYRGDVQLRVLNI 350

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G+DPD ++R +   A+  L   +   +D    +   +      D+  +    + + ++
Sbjct: 351 PDGKDPDDYLRLHTAEAYIALTNSAPLWLDWQIDKIVSDADLKQADQFQQCSQSIVSLLS 410

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           +I +   R +Y +   +   Q   + +   +       +  R       S +       K
Sbjct: 411 NIANADTRTHYIRYCAEIFSQGDGRIVPLLAENLLAQVRRKRRNPGNKQSTK-GDKRDTK 469

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQKLWSFLFSDFV-EQK 530
                     EAALL   I+ P   Q     L   D+ +  +  + LW  +      E++
Sbjct: 470 ILNRSFLEEAEAALLRIYIHCPEHRQTIIDGLDARDLGFSFSHHRALWRMVTELTEIEKR 529

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ--GYQQALALYKRF 588
                 + Q L         +      +   L     +  +  VR+    + A+A  +R 
Sbjct: 530 EASASTMLQTLRNCS----AESTGPLSQVHHLLYLDEKTRLDTVREPLVIRAAIACLER- 584

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +  ++   + +           E        +     +I++++ +E  ++
Sbjct: 585 NMCEKRYRRLLELWQAGDFSKTPETHTEYQKQIVAEKSRINELDREERSVD 635


>gi|327479260|gb|AEA82570.1| DNA primase [Pseudomonas stutzeri DSM 4166]
          Length = 650

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/661 (27%), Positives = 294/661 (44%), Gaps = 70/661 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I  ++G  +   +   N     Y A CPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRSDIVEVVGSRIQLKKTGKN-----YSALCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P  D   K + ++ + + L  L
Sbjct: 60  YCFGCGAGGNALGFVMDHDQLDFPQAVEELAKRAGMEVPREDSGRKHKPRQLVDSPLYPL 119

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A D++  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LAAAADYYRQALKSHPTRKAAVEYLKGRGLSGVIARDFGLGFAPPGWDNLMKHLGGDALQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKALIDAGLLIENAENGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A    +              I++VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLYEARQANRDL----------DEIMVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G +AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDAAGRKAAWRALEATLPNLQDGRRARFLFLPDGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF   +   S PL D  +++ +E     + + +A L       I  I   
Sbjct: 349 DTLVRAEGTDAFRARIQQHSQPLADYFFQQLSEEADPRSLEGKAHLATLAAPLIEKIPGN 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYI-------------------------------------T 441
            LR    Q + +      +                                         
Sbjct: 409 NLRALMRQRLTEITGLNGEALQHMAAAPVSAPSSTPTYDDYTYYDASPAYGEPDHFEPPE 468

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK-PSLREAALLLTLINHPAILQE 500
                 R  K   +   +           + +G  +           L TL++HP + Q+
Sbjct: 469 PVQPQPRNGKPGKKEWKKDWKKNGQGPDLMPRGPRTPATVEPPALTTLRTLLHHPELAQK 528

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
             ++++    +++   +L   L     +       ++  R      G LL+ L  +    
Sbjct: 529 V-EDVSHFAAEDDTYAQLLVALLGTLQKNPKLRSLQLIARWHGTDQGRLLRALAEKEWLI 587

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT-AKGEAEKTAILIS 619
                    +  ++ Q +   +      R   R+ E + ++  Q   +  E ++   L+S
Sbjct: 588 ---------SADNLEQQFFDTINSLA-ARQRERRLESLLRKARQGELSAEEKDQLRNLLS 637

Query: 620 I 620
            
Sbjct: 638 R 638


>gi|254784702|ref|YP_003072130.1| DNA primase [Teredinibacter turnerae T7901]
 gi|237684641|gb|ACR11905.1| DNA primase [Teredinibacter turnerae T7901]
          Length = 640

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 170/653 (26%), Positives = 274/653 (41%), Gaps = 48/653 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI DLL  + I  ++   V   +   N     Y ACCPFH+EKTPSF  +  K F
Sbjct: 3   RIPQSFIDDLLNRLDIVEVVDHRVKLKKNGKN-----YAACCPFHEEKTPSFTVSPDKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL 120
           YYCF C   G+ + FL      SF+ESV+ LA  AG+ +P    P   ++   Q +L  +
Sbjct: 58  YYCFGCGASGNAIGFLMEYERQSFVESVETLAKSAGLEVPREETPFHREQYARQKNLYDV 117

Query: 121 IEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +E A+ ++   LK  R + +   YL  RG+  H    F LG+AP    +L          
Sbjct: 118 LEKASSYYQLQLKENRGRDKAVRYLQNRGLSGHIARDFGLGFAPGGWDNLLTKYGLSEQD 177

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + ++ +GL+I        YDRFRNR++FPI  +RG+VI FGGR L      KYLNSPET
Sbjct: 178 IDLLVGSGLVIRRAEDDKLYDRFRNRIMFPILDNRGRVIGFGGRVL-DDSKPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A    +          +   I++VEGYMDV++L Q G+ N V++LG
Sbjct: 237 DVFHKGEELYGLYQARMANR----------NLEQILVVEGYMDVIALAQYGLTNAVATLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA  E  L+L +K +  IV CFDGD  G  AA +A+   L  +  G ++ F+ L  G+DP
Sbjct: 287 TACGEEHLKLAFKHTQEIVFCFDGDAAGRTAAKRALMNSLTSMEDGRQIKFLFLPEGQDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  G   F + I    PL D L+    E  +  + D RA         +  +    
Sbjct: 347 DTLVRQIGAERFAQQIKNGTPLEDFLFDVAAEGLNIQSMDGRARFSKICAPLLAQLPAGV 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-------- 471
            R      +  R        +       +                  +            
Sbjct: 407 YRELMFTNLAKRTGLSSAALMELTHEKPQLPDAAPALPAVVDVEPPPVDVPEHSAATIYE 466

Query: 472 ----VKGKLSKKPSLREAALLL---------------TLINHPAILQEQYQELADIRYDN 512
                + + +  P  +E                     L+++P ++Q+           N
Sbjct: 467 HLEGTRFQGAPLPDEQEKQAFRKRTNVALNPVKAATLLLLDNPQLIQQVVLRPDADAAGN 526

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            EL +L   L      +       +          +  ++L R +    L   +  A+  
Sbjct: 527 EELLRL-QNLIDYLQNRPNATFSTLLGFWGGAYGIDSQQELARMLATHELTRDSHLASFE 585

Query: 573 DVRQGYQQALALYKRFRLL--SRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
             +        +  ++  L   ++ E+++ +        E ++   L+ ++ +
Sbjct: 586 SAKVLSHAFAKINHQYHRLTHRQELEQLKSKGLANLNSEEKDRFRQLVQLIQK 638


>gi|26987130|ref|NP_742555.1| DNA primase [Pseudomonas putida KT2440]
 gi|60392932|sp|P0A118|PRIM_PSEPK RecName: Full=DNA primase
 gi|60392933|sp|P0A119|PRIM_PSEPU RecName: Full=DNA primase
 gi|24981761|gb|AAN66019.1|AE016231_2 DNA primase [Pseudomonas putida KT2440]
 gi|2281435|gb|AAC45508.1| DNA primase [Pseudomonas putida]
 gi|2731761|gb|AAC38072.1| DNA primase [Pseudomonas putida]
          Length = 660

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/671 (26%), Positives = 296/671 (44%), Gaps = 81/671 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DL+  + I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLINRLDIVDVVSSRVQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P    +   + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREQGRRDQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           ++ A++F+  +L++    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LDAASEFYRQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   S   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLYEARKHNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G +AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           DS +R  G  AF   +   S PL D  +++        + + +A +       I  I   
Sbjct: 349 DSLVRAEGTDAFMARINQHSQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKY--------------------------------------- 439
            LR      +++      Q+                                        
Sbjct: 409 NLRQLMRNRLKEITGLDPQQVEQLAQQAPATSSMPDYDPGYDYDAMASYTPDYGDMPQHD 468

Query: 440 ---------ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
                       + G  +    +      +   +   Q      ++         A L T
Sbjct: 469 YAPVHQEQAWKPNKGGSKKPWSDKPWDKNRKGGKPWQQRDEAPPRVPAPVEPPTLAALRT 528

Query: 491 LINHPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           L++HP +  +         + + E    +L   L     +       ++  R      G 
Sbjct: 529 LLHHPLLAGKVEDA---SHFADEEHLYSQLLVALIEAAQKNPGLSSMQLIARWHGTEQGR 585

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           LL+ L  +      W    +            +L+  +R R L +     + + +++T++
Sbjct: 586 LLRALAEKE-----WLIVADNLEQQFFDTIT-SLSARQRERSLEQLLR--KSRQSELTSE 637

Query: 609 GEAEKTAILIS 619
            + +  A+L  
Sbjct: 638 EKTQLLALLSR 648


>gi|325273044|ref|ZP_08139354.1| DNA primase [Pseudomonas sp. TJI-51]
 gi|324101817|gb|EGB99353.1| DNA primase [Pseudomonas sp. TJI-51]
          Length = 659

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/670 (26%), Positives = 296/670 (44%), Gaps = 80/670 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DL+  + I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLINRLDIVDVVSSRVQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P    +   + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREQGRRDNKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           ++ A++F+  +L++    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LDAASEFYRQALRSHPTRKAAVDYLKGRGLSGEIARDFCLGFAPPGWDNLLKHLGADALQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   S   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLYEARKHNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G +AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESALPNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           DS +R  G  AF   +   + PL D  +++        + + +A +       I  I   
Sbjct: 349 DSLVRAEGTDAFMARINQHAQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIPGA 408

Query: 419 KLRYYYSQAIRDRLQQL-----------------------------------------FQ 437
            LR      +++                                              F+
Sbjct: 409 NLRQLMRNRLKEITGLDPQQVEQLAQQAPAPSSMPDYDPGYDYDAMASYTPDYGDMPQFE 468

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLM------QSSLVKGKLSKKPSLREAALLLTL 491
               +     +  K   +      P  +        Q      ++         A L TL
Sbjct: 469 PAPFQQEQAWKPNKGGGKKPWGDKPWDKNRKGGKNWQRDEAPPRVPAPVEPPTLAALRTL 528

Query: 492 INHPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           ++HP +  +         + + E    +L   L     +       ++  R      G L
Sbjct: 529 LHHPLLAGKVEDA---SHFADEEHLYSQLLVALIEAAQKNPGLSSMQLIARWHGTEQGRL 585

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           L+ L  +      W    +            +L+  +R R L +     + + +++T++ 
Sbjct: 586 LRALAEKE-----WLIVADNLEQQFFDTIT-SLSARQRERSLEQLLR--KSRQSELTSEE 637

Query: 610 EAEKTAILIS 619
           + +  A+L  
Sbjct: 638 KTQLLALLSR 647


>gi|311895921|dbj|BAJ28329.1| putative DNA primase [Kitasatospora setae KM-6054]
          Length = 635

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 153/654 (23%), Positives = 271/654 (41%), Gaps = 42/654 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + ++ +   +PI  ++G YV                 CPFHDEK+ SF+ +  KG 
Sbjct: 4   RIRDEDVQAVRAALPIDAVVGDYVQL----AAGGGAQLKGVCPFHDEKSASFYVHPGKGV 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIR 119
           ++CF C   GD ++FL  +  CSF E+V+R+AA AG+ L   +     + +   +T L+ 
Sbjct: 60  FHCFGCGESGDTITFLMKIEHCSFAEAVERMAAQAGITLRYEEGGYSPRHQQGERTRLVE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             +VA  +F   L     +    +L ERG D  A + F +GYAP     L   LR +GF+
Sbjct: 120 AHKVAAAWFQEQLATPEAEIGRRFLAERGFDEAAAKHFGVGYAPVGWEHLVRFLRGRGFT 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           +++I   GL   G       DRFR RL++PIR S G V+ FG R L + ++  KYLN+PE
Sbjct: 180 DKEISVGGLASQGQRG-GLIDRFRGRLVWPIRDSSGDVVGFGARRLREDDNGPKYLNTPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K   LY    A   + KS R           ++VEGY DV++   AGV   V++ 
Sbjct: 239 TPIYKKSNVLYGIDLARKEIAKSGRA----------VVVEGYTDVMACHLAGVTTAVATC 288

Query: 299 GTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  E  ++++ +            V  FDGD  G +AA +A +          R +  
Sbjct: 289 GTAFGEDHIKIIRRLLMDTSTYRGETVFTFDGDAAGQKAALRAFEDDQKFAA---RTSIA 345

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP       G  A   L+   +PL +   +        +T + RA         
Sbjct: 346 ITPGGMDPCELRLAQGDEAVRTLVDNPVPLFEFALRSAVARHRVDTAEGRAAALEEAAGI 405

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR--------HRDQKGPS 463
           I  IKD+ +++ Y+  +   +  L ++++         W++  +         R +  P 
Sbjct: 406 IVKIKDRSIQHEYAVQLAGMVGILDERFVVNRIAQLARWQRENQQNGQQRTLRRPEAAPQ 465

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
               +    +          E  LL   + HP ++   + +  +  +     + +   + 
Sbjct: 466 PARPERPAFRLNPRDPAQFVERELLKLALQHPDLVSPAFDQYGEDEFPTPPYRAVRRAIG 525

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                       +    + E    + ++ L  ++    + +           Q Y     
Sbjct: 526 QAGGTAYGASLPDFTSAVREASPDDQVRGLVTELTVEPIRTRRK------ADQVYAGEFL 579

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           +  R + + R+ +E+   + ++  +  AE+   + S L  +     Q+ S+ A 
Sbjct: 580 VKLRLQAVDRRIDEVRAHLRRLGDRATAEQQHPVQSELWALQQYGQQLRSRGAA 633


>gi|197335161|ref|YP_002157047.1| DNA primase [Vibrio fischeri MJ11]
 gi|197316651|gb|ACH66098.1| DNA primase [Vibrio fischeri MJ11]
          Length = 587

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/632 (27%), Positives = 293/632 (46%), Gaps = 57/632 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI +LL    I ++I   V   ++  N     Y ACCPFH+EK+PSF  +  K FY
Sbjct: 5   IPRSFIDELLNRHDIVDIIDARVKLKKQGKN-----YGACCPFHNEKSPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114
           +CF C V G+ + FL       F+E+++ LA++ G+ +P                  + +
Sbjct: 60  HCFGCGVHGNAIDFLMEFDRLEFVEAIEELASMLGLDVPREQRSGFNAPSSGPTANSEQK 119

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  L+   + F+   LK+A +     YL +RG+    ++ F +GY  D    ++ +  
Sbjct: 120 RSLYDLMGGISQFYRSQLKSAANIHAINYLKDRGLSGEIVQKFGIGYIADEWELVKNNFG 179

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           +   S++ ++  G+LI+ DN    YDRFR R++FPIR  RG+VI FGGR + +G + KYL
Sbjct: 180 RDKASQDALVSGGMLIESDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGRVIGEG-TPKYL 237

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKGK LY  + AL                   ++VEGYMDV++L Q GV   
Sbjct: 238 NSPETPIFHKGKELYGLYEALQA----------YKDLPQALVVEGYMDVVALAQYGVDYA 287

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGTA T   ++LL++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L 
Sbjct: 288 VASLGTATTGDHMQLLFRQTSTVVCCYDGDRAGREAAWRAMEQALPYLNDGRQLKFMFLP 347

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            GEDPD++IR YGK AFE+ I  +  L++ +++   +    +T + +A+L       I+ 
Sbjct: 348 DGEDPDTYIRQYGKEAFEQEIANAESLINFMFRTLVDQIDTSTREGKAKLTTLAVPLIDK 407

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           +    LR Y  + +   L  L +  + +              +      +RL Q  + + 
Sbjct: 408 VPGGTLRLYLREQLGKTLGILDESQLQQLI-----------SKQGAVEPKRLAQPEIKRT 456

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            +          ++  L+ +P + Q      +        L  L+  L        +   
Sbjct: 457 AM--------REVITLLLQNPELAQLVPDLESVKEIPLPGL-SLFLQLLESCRHNPHITT 507

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + +        +LL +L              +  +  +     Q +          +Q
Sbjct: 508 GLLLEHWRGDKNEKLLSRLAAWELPID-QDNIQDVFMDSLDSVLAQCIN---------QQ 557

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            E ++ +  + T     E+   L++++ E+  
Sbjct: 558 IESLQTK--ERTLGLSVEEKRELLALMLELKA 587


>gi|307546062|ref|YP_003898541.1| DNA primase [Halomonas elongata DSM 2581]
 gi|307218086|emb|CBV43356.1| DNA primase [Halomonas elongata DSM 2581]
          Length = 613

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 176/633 (27%), Positives = 289/633 (45%), Gaps = 35/633 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    +  ++G+ V   R   N         CPFH EK+PSF  +  K FY
Sbjct: 5   IPQRFIDDLLARTDVVEIVGERVKLKRAGRNHS-----GLCPFHQEKSPSFTVSADKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIR 119
           +CF C   G+ L FL       F E+V+ LAA  G+ +P     DP  + +E+ + + + 
Sbjct: 60  HCFGCGAHGNALRFLMEYDRLRFPEAVEHLAARLGLEVPREGDDDPHQQARERKRKEGVN 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E+A  FF   LK    +    YLD+RG+    +  F +G+AP    ++R HL ++G S
Sbjct: 120 LLELAASFFRERLKMPEGEAARAYLDKRGLSPEVVRDFGIGFAPAQWEAMRRHLGERGIS 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           E   IE GLL+  ++S  +YDRFR+R++FPIR  RG+ +AFGGR L      KYLNSPET
Sbjct: 180 EAVQIEYGLLVHREDSGRTYDRFRDRVMFPIRDIRGRTVAFGGRVL-GDAKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGRELYGLYEARQANARLDR----------VVIVEGYMDVVALAQFGIRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA TE  L  L+++   +V CFDGD  G +AA +A+   L  +I G +  F+ L  GEDP
Sbjct: 289 TATTEDHLSRLFRVVDEVVFCFDGDRAGRQAADRALRTALPMMIDGRQARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  G  AFE  +  + PL + L++   + R     +ER      +   I  + +  
Sbjct: 349 DTLVRREGADAFEDRVTCASPLSEFLFELAAQGRDLARIEERERYASQVLEAIGLLPEGM 408

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           L+      +  R       + +  + +           D+  P      + +V       
Sbjct: 409 LKSLLLTELSRRTGVDQSSFESLMARHASPESAGRSVSDESAPPPMAEAAPVVGEAPRGG 468

Query: 480 PSLREAAL------LLTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYF 532
                  L      L  L++ P +++       D    + +   +L   +       +Y 
Sbjct: 469 APAARGTLGLMARALQLLVHEPGLVERLPDN--DDWCSHEDGDARLCREVVRLLKAGRYR 526

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             + +         GE L +L R+           +         +      ++R R   
Sbjct: 527 SAQVLLAHFHGTPEGERLAELARR------EPLVPKGLRGTELDNWVAYFQRHRRQRSPQ 580

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
            + + +  + ++   +   ++   L  +L E+ 
Sbjct: 581 EEFDALLAR-SRTGERLSQQERQRLNELLMELK 612


>gi|260753822|ref|YP_003226715.1| DNA primase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258553185|gb|ACV76131.1| DNA primase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 628

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/636 (28%), Positives = 299/636 (47%), Gaps = 44/636 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P +F+ +L   I +S+LIG+ V   R        ++ ACCPFH+EKTPSF+ ND KGFY
Sbjct: 7   LPPEFLDELRQRITLSSLIGRTVKLTRAGR-----EFRACCPFHNEKTPSFYVNDEKGFY 61

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F++   G SF+++V+ LA  AG+ +P  +P   ++ K    L  ++ 
Sbjct: 62  HCFGCGAHGDAIRFVTETRGLSFMDAVRELAGQAGMDIPEANPAAVRQAKRTATLHDIMA 121

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F   L       +  YLD RGI     + F LG+AP+ R  L+  L      +  
Sbjct: 122 EAAKWFSEQLHGIEGAEVRRYLDNRGISPAIAQNFGLGFAPNGRGRLKNALSHHAVEKLI 181

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--------KGESVKYL 234
            +   + ++G +    YDRFR RL+ PI+  RG+VIAFGGR L            S KYL
Sbjct: 182 EVGLLISVEGRD---PYDRFRGRLMIPIKDQRGRVIAFGGRRLESIEGGNSLPDNSPKYL 238

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET LF KG+ LYN   A    ++  R          II+VEGY+DV+ L QAG+   
Sbjct: 239 NSPETPLFDKGRTLYNIDKASQAARRQNR----------IIVVEGYLDVIGLAQAGIHEA 288

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+ LGTALTE+Q+  LW++  + +LCFDGD  G +AA +A +  L    PG  ++FV L 
Sbjct: 289 VAPLGTALTEHQIERLWRIEDKPILCFDGDSAGQKAAVRAAERALVQARPGKTLSFVTLP 348

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G+DPD  ++  GK+AFE+++   + L  +L++ E       +P+ RA L   L      
Sbjct: 349 NGKDPDDLVKEQGKSAFEEVLSRPIALDRLLYRFEASQIDPQSPEGRAALSKRLDELAAS 408

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
            +D+ +   Y    ++   + F             WK   +   Q   +  +  S L   
Sbjct: 409 CRDEFIARGYRSNFKNLFYENFG------------WKSKKQQDSQTTIAATVTLSDLSTP 456

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            +S         +L+ L  +P  ++++ + LA++   + +L+K    L +  + +     
Sbjct: 457 TISDLECQYSRQILIGLSLYPEAIKQRLERLAELAVTDPKLKKWRETLITAVISEPDLDR 516

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           + I   L      ++        +D        +       +     + L    R L+ +
Sbjct: 517 DTIKAILKADANVDI--DTWDIKKDLRFPFTRPDIAPDLAIESLVALIDLVVEERELATE 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           ++++++   +     +  K          +H +   
Sbjct: 575 EQQLKQVFTEERLIADYAKFEAA----QALHRKRRA 606


>gi|296284011|ref|ZP_06862009.1| DNA primase [Citromicrobium bathyomarinum JL354]
          Length = 633

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 189/633 (29%), Positives = 294/633 (46%), Gaps = 36/633 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M     ++  L   + +S++I +     R        ++ ACCPFHDEKTPSF  ND KG
Sbjct: 1   MALSPQWLDQLRTRVTLSSVIMRTTKLQRAGR-----EWKACCPFHDEKTPSFTVNDQKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF C   GD + +++   G +F+++V+ LA  AG+ +P  DP+  +K K +  L   
Sbjct: 56  FYHCFGCGAHGDVIRWMTDQRGLTFMDAVKELAVTAGMEMPAPDPREAQKAKRRAGLHDA 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A +FF   L   R      YLD+RG     +  F  GYAPD R +L   L   G   
Sbjct: 116 MGAAQEFFVRELAGPRGNAARDYLDKRGFSPATMREFGFGYAPDERQALATAL---GTLP 172

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPET 239
            +++  G L    +    YDRFR+RL+ PI   RG+VIAFGGR L+ K  + KYLNSPET
Sbjct: 173 PQLLVEGGLRIAIDGKDPYDRFRDRLMLPIHDVRGRVIAFGGRILTAKDGAPKYLNSPET 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LF KG+ LYN   A    +KS R          I++VEGYMDV++L  AG+   V+ LG
Sbjct: 233 PLFDKGRTLYNIHRASPAARKSDR----------IVVVEGYMDVIALANAGIAEGVAPLG 282

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE  +  LW+  P  +LCFDGD  G RA  +AI+  L  L PG+ +    L  G DP
Sbjct: 283 TALTENHIAELWRHVPCPILCFDGDAAGQRAVRRAIERALPLLKPGHSLKIAWLPAGLDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D  I+  G  AFE+++  +  L++ LW  E +    +TP+ +A L+  L   I  I++  
Sbjct: 343 DDLIKKKGVAAFEQVLGSAQSLLEALWTLEMQAAPLDTPEAKAGLKARLMTHIESIEEPD 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           +R  Y + + D+          +     R   +    RD+  P    +   L       +
Sbjct: 403 VRSLYRRDLLDKFSAFAFPRREKAPFQPRKQWR----RDEPEPLSPELAKRLANLSQGGQ 458

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIH 538
                A ++  L   P +++   + LA++   +     L+  +       +        H
Sbjct: 459 RQRLLADVVGQLARFPELVESHREALAELGEIDPATFSLFDPVLERAETLEADGKKAIFH 518

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           +R   R   + +  L R+  DA              R+   +A+ L      L +     
Sbjct: 519 ERWGSRSAEQSVSGLPREAHDAAT-----------AREDLAEAIELLVEGPALEKALAAA 567

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            ++  +   +G   +   L+        ++ Q+
Sbjct: 568 TERF-EHDPEGAFAEQQRLLKRKLAFDARLGQM 599


>gi|296119844|ref|ZP_06838398.1| DNA primase [Corynebacterium ammoniagenes DSM 20306]
 gi|295966998|gb|EFG80269.1| DNA primase [Corynebacterium ammoniagenes DSM 20306]
          Length = 634

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 135/655 (20%), Positives = 257/655 (39%), Gaps = 52/655 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +    PI  ++G+YV                  PF +EKTPSFH    +G+
Sbjct: 5   RIPESDIQAIRERAPIEEIVGEYVQLKPAG----YDSLKGLSPFKEEKTPSFHVRPQRGY 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118
           Y+CFS    GD   FL  +   SF E+V+ +A   G  +         +++    +  L+
Sbjct: 61  YHCFSTGNGGDVFKFLMEMEQVSFPEAVESVAQKIGYHINYQGGTTGARDEKPGTRQRLV 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              + A +F+ H L+         +L +RG     I  F+ GYAP    +  ++L +KGF
Sbjct: 121 AANKAAHEFYRHQLETPEAATARNFLLDRGFSQDIIYTFECGYAPAGWDTTTKYLLRKGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           S E++  AG  I         DRF  RL++PI+   G VI FG R L   +   KY+N+P
Sbjct: 181 SFEELEAAG--ISKMGKRGPIDRFHRRLLWPIKDLAGNVIGFGARKLFDDDKLGKYMNTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L++K K L+    A   +           S    ++VEGY DV+++  AGV   V+S
Sbjct: 239 ETMLYNKSKVLFGLDLAKREIA----------SQRQAVVVEGYTDVMAMYAAGVTTAVAS 288

Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA     L++L          +  ++  FDGD+ G +AA +A +          +   
Sbjct: 289 CGTAFGGPHLQVLRRLMLDDSYFNGELIYTFDGDEAGQKAAMRAFE---GEQKFTGQSFV 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G  A   L+ + +P+ + + +        +T + R +       
Sbjct: 346 AVAPEGMDPCDLRLERGDAAVRDLVADRIPMFEFVIQSVLSEYRVDTAEGRLQALRRAVP 405

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  I+D+ L+  Y++ +   +       + +         K    R       R  +  
Sbjct: 406 VVAQIRDEPLQREYARRLAGWVGWPDPDEVLQQVRAEVRKPKKPEPRRTILSDSRSTEVP 465

Query: 471 LVKGKLSKKPSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                + + PS RE         L   +  P +    +  + +  + N   + + + + +
Sbjct: 466 STPAPMIRPPSPRETHLWPQREALKVALQFPNVAGAYFDGVDEEAFTNEAYRIVRNAIIT 525

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR------QGY 578
                +            ++   E +  +  ++ D    +  +E  + ++       + Y
Sbjct: 526 AGGATQGA----------QQPTVEWIANVAGEMLDLTGRNFVSELAVEEILPTGLSMEEY 575

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
              +    +   +     E++ ++ ++    + E    L + L  +     ++ +
Sbjct: 576 ADMVLSRLQESQVGNHIAELKARLGRMRPSEDEEAYNSLFADLVALEQARRELNN 630


>gi|310766302|gb|ADP11252.1| DNA primase [Erwinia sp. Ejp617]
          Length = 581

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 178/629 (28%), Positives = 280/629 (44%), Gaps = 54/629 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATLYGLEVPYESGSGPSQLERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    DF+  SL + +      YL +RG+    I+ F +G+AP    +  +        
Sbjct: 119 LMTGLRDFYQQSLAHGQSAGARNYLAQRGLSDEVIQHFSIGFAPAGWDNALKRFGSNPDD 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + + +AG+L+  ++   SYDRFR R++FPI   RG+VI FGGR L      KYLNSPET
Sbjct: 179 RQSLTDAGMLV-TNDQGRSYDRFRERVMFPIHDKRGRVIGFGGRVL-GDGMPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + AL              +   +++VEGYMDV++L Q GV   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEALK----------NHPAPGKLLVVEGYMDVVALAQFGVDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA+L       +  +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSTFLYDTLLPQVDLSTPDGRAQLATLALPLLRQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + D+L       + +         K       K  +                
Sbjct: 407 LRIYLRQVLGDKLGIPDHIQLEKLFPEKAESAKPVAQPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  LI +P +           + +      L+  L S  V        ++ +
Sbjct: 452 -----RILIGLLIQNPQLATIVPPLDGLEQSETPGF-PLFVELVSTCVAHPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                 F + L+ L                 + D  +   Q          L R+ EE+ 
Sbjct: 506 LYRGTEFSQSLETLATW----------NHMIVDDEVETMFQDALASMYNNALERRLEEL- 554

Query: 600 KQIAQVTAKG-EAEKTAILISILHEVHIQ 627
             IA     G  AE+   L ++   +  Q
Sbjct: 555 --IAHDRTHGLNAEERRELWTLSQALKKQ 581


>gi|213965824|ref|ZP_03394016.1| DNA primase [Corynebacterium amycolatum SK46]
 gi|213951583|gb|EEB62973.1| DNA primase [Corynebacterium amycolatum SK46]
          Length = 652

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/657 (21%), Positives = 260/657 (39%), Gaps = 49/657 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +    PI  ++ +YV+                 PF DE+TPSFH   + G+
Sbjct: 14  RIPDSDIAAIRERTPIEEIVAEYVNLKPAGA----DSLKGLSPFKDERTPSFHVRPNHGY 69

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           Y+CFS    GD  SFL  +   SF E+V+  A   G  +        ++E+   +  LI 
Sbjct: 70  YHCFSTGKGGDVFSFLMEMEHLSFPEAVEACAEKIGFHINYEGGGTGRREEPGTRQRLIA 129

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A  F+              +L+ RG  +     F  GY+P    +L +HL++ GFS
Sbjct: 130 ANREAQKFYREQFSTPAAAPAREFLENRGFTAEHAAQFGCGYSPAGWDTLTKHLQRLGFS 189

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
            E++ +AGL           DRF  RL++PIR+  G VI FG R L   ++  KY+N+PE
Sbjct: 190 FEELDKAGLSK--MGRMGPIDRFHRRLMWPIRNMSGDVIGFGARKLFDDDNLGKYMNTPE 247

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T+L+ K K L+    A   +           +    ++VEGY DV+++  +GV   V+S 
Sbjct: 248 TMLYKKSKVLFGLDLAKKDIA----------AGHQAVIVEGYTDVMAMHASGVTTAVASC 297

Query: 299 GTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  E  L+LL +L          ++  FDGD+ G +AA +A +          +    
Sbjct: 298 GTAFGEEHLQLLRRLMLDDNFFRGELIYTFDGDEAGQKAAMRAFEGEQNFTG---QSYVA 354

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP    +  G+ A   L+    PL++ + +    +    T + R      +   
Sbjct: 355 VAPDGMDPCDLRQKKGEAAVRDLVASRRPLIEFVLRTLLADYDLTTANGRVSGLRRVVPV 414

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD------------Q 459
           +  +KD  LR  Y++ +   +    +  + +         +N +               +
Sbjct: 415 LAQLKDAALRDEYAREVAGWIGWNDEAELVQRVREEASRPQNEKRTPYQRRQEEARAREE 474

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
              ++R    +L            +   L   I  PA     +  LA   + +   + ++
Sbjct: 475 AEEARRRRNPALPYPNPRDPVLYAQREALKLAIQEPATTGPVFDALAPETFGHPTYRAVF 534

Query: 520 SFLFSDFVEQKYF--LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
             + +           P      + ++   +++K L   V + G+     +   +     
Sbjct: 535 DAIMAAGGACGEAATQPHSWATAIMDQAREDVVKHL---VTELGVEQIAVDTETLRP--- 588

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           Y QA+    +   +  Q  +++  ++++    +      L + L  +     +++++
Sbjct: 589 YAQAILARLQEVWVGDQIAQLKAMLSRMRPSDDETAYNSLFADLLAMEQYRRELQAE 645


>gi|320195228|gb|EFW69857.1| DNA primase [Escherichia coli WV_060327]
          Length = 581

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +  ++  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHLRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  +  ++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMERAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADRNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|170766158|ref|ZP_02900969.1| DNA primase [Escherichia albertii TW07627]
 gi|170125304|gb|EDS94235.1| DNA primase [Escherichia albertii TW07627]
          Length = 581

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 179/630 (28%), Positives = 298/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSDEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLINAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESVVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L   +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLKNLDQNKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|157162542|ref|YP_001459860.1| DNA primase [Escherichia coli HS]
 gi|170018682|ref|YP_001723636.1| DNA primase [Escherichia coli ATCC 8739]
 gi|188494232|ref|ZP_03001502.1| DNA primase [Escherichia coli 53638]
 gi|312972669|ref|ZP_07786842.1| DNA primase [Escherichia coli 1827-70]
 gi|157068222|gb|ABV07477.1| DNA primase [Escherichia coli HS]
 gi|169753610|gb|ACA76309.1| DNA primase [Escherichia coli ATCC 8739]
 gi|188489431|gb|EDU64534.1| DNA primase [Escherichia coli 53638]
 gi|310332611|gb|EFP99824.1| DNA primase [Escherichia coli 1827-70]
 gi|323941836|gb|EGB38015.1| DNA primase [Escherichia coli E482]
          Length = 581

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 177/630 (28%), Positives = 299/630 (47%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L   EDP
Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDDEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581


>gi|154686782|ref|YP_001421943.1| DNA primase [Bacillus amyloliquefaciens FZB42]
 gi|154352633|gb|ABS74712.1| DnaG [Bacillus amyloliquefaciens FZB42]
          Length = 603

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/633 (24%), Positives = 284/633 (44%), Gaps = 38/633 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + +  +     I  +IG YV   ++  N     Y+  CPFH E TPSF  +  K  
Sbjct: 4   RIPDEVVNQVQQSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGENTPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118
           ++CF C   G+  SFL  + G SF E+V  LA    +  P           +   +  + 
Sbjct: 59  FHCFGCGAGGNVFSFLRQMEGYSFTEAVSHLADKYQIDFPDDITIHSASRPESSGEQKMA 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              E+   F+HH L      +    YL  RG     I+ F++GYA DS   + + L+++G
Sbjct: 119 EAHELLKKFYHHLLINTKEGQEALDYLLSRGFTKELIDEFEIGYALDSWDFMTKFLKKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           F EE + +AGLLI  ++ +  +DRFRNR++FPI    G V AF GR L   +  KY+NSP
Sbjct: 179 FEEELMEKAGLLIRREDGSGYFDRFRNRIMFPIHDHHGAVAAFSGRAL-GSQQPKYMNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LFHK K LYNF  A   ++K  R           +L EG+ DV+S   +GV+  +++
Sbjct: 238 ETPLFHKSKLLYNFHKARLPIRKEERA----------VLFEGFADVISAVSSGVKESIAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT+LTE  +++L +    ++LC+D D  G  A  KA  L         +V   +L  G 
Sbjct: 288 MGTSLTEEHVKILRRNVQEVILCYDSDKAGYEATLKAAGL---LQKADCKVRVSMLPDGL 344

Query: 358 DPDSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD +IR  G   F   +I  S+ ++    +   + ++ +   +R      +   I+ + 
Sbjct: 345 DPDDYIRIRGGEKFRTDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYMKEVLKEISALS 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               +  Y + +        +    + S Y R      ++ + +    R+   +  + +L
Sbjct: 405 GSLEQEMYVKQLASEFSLSVESLTEQLSIYARQNAPGDKNAEPQTRRARVTTKA-KRRRL 463

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++    ++++  + +    ++ +  + L ++L++ + E     P+ 
Sbjct: 464 RPAYENAERLLLAHMLRDRNVIKKVIERVG-FEFNIDGHRALAAYLYAVYEEGADMTPQH 522

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +  R+ +    +LL  +       G+     E +  ++    ++ L  ++++ +     +
Sbjct: 523 LMARMQDEEISQLLSDI-------GMLQVNEELSEAELSDYVKKVLD-HRKWSM----IK 570

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           E E + A    + +  K A L   +  ++  + 
Sbjct: 571 EKEAERADAERQKDFVKAASLAQEIVALNRSLK 603


>gi|119474864|ref|ZP_01615217.1| DNA primase [marine gamma proteobacterium HTCC2143]
 gi|119451067|gb|EAW32300.1| DNA primase [marine gamma proteobacterium HTCC2143]
          Length = 611

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/617 (26%), Positives = 282/617 (45%), Gaps = 32/617 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI DLL  + I  +I + V   +   N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPQSFIDDLLDRLDIVEVIDRRVGLKKSGRN-----FTACCPFHEEKTPSFSVNQEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C   G+ + F+       F  +++ LA  AG+ +P      +++ + + ++  ++
Sbjct: 59  YYCFGCGAGGNAIGFIMDYERMDFPRAIEVLADTAGLEVPREASAFQEQPQQKKNIYTIL 118

Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           E A  ++   LK + + +R   YL  RG+       F +GYAP    +L  HL Q     
Sbjct: 119 EKAAVYYQQQLKEHPQKQRAVDYLKARGLSGEIARDFDMGYAPPGWDNLLNHLGQSDEDR 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + +I+ G+LI+ +     YDRFR+R+IFPIR +RG+VIAFGGR L   +  KYLNSPET 
Sbjct: 179 QLLIDGGMLIEKEEENKLYDRFRDRIIFPIRDNRGRVIAFGGRVL-GDDKPKYLNSPETP 237

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHK K LY  + +    ++  R          +++VEGYMDV++L Q G+    ++LGT
Sbjct: 238 VFHKSKELYGLYQSRKANRQLQR----------LLVVEGYMDVVALAQHGINWSAATLGT 287

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A +   L  +++  P ++ CFDGD+ G +AA +A+D  L  +  G R  F+ L +GEDPD
Sbjct: 288 ATSTDHLNRVFRQCPEVIFCFDGDEAGRKAAVRALDSALPAMEDGRRARFLFLPQGEDPD 347

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S +R  G + F +L+ ++ PL + L+  + +     + D RA +       I+ +     
Sbjct: 348 SMVRAIGASNFIRLVEKAEPLEEYLFNAQADGLDLGSLDGRARMSTLAAPLIDKLPGGVF 407

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +     ++ DR     +K       + R  +             R   ++    K   K 
Sbjct: 408 KELMMSSLADRTGLSLEKLSEILQRHKRNKQATEPQPASPQLPDRAPLNTPASPKRRDKG 467

Query: 481 SLREAAL-------LLTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYF 532
            ++   +       +  L++ P         +      +++    L   +     ++   
Sbjct: 468 LVKSETMRDPILYAIALLLHDPKAASHV--TIPATLLQSDDGNAPLLIAMLELLHKRPDS 525

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               +        +GE L+QL             +    +++    Q     ++   L  
Sbjct: 526 TSAMLIGHWYGESWGETLQQLLHAE-----QFIPSTDIELELIDTLQHLDRRHQHQDLGH 580

Query: 593 RQKEEIEKQIAQVTAKG 609
           +  + + K  A ++ + 
Sbjct: 581 QLDKILSKDYASLSDEE 597


>gi|54307644|ref|YP_128664.1| DNA primase [Photobacterium profundum SS9]
 gi|46912067|emb|CAG18862.1| putative DNA primase [Photobacterium profundum SS9]
          Length = 608

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/621 (27%), Positives = 284/621 (45%), Gaps = 51/621 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DL+    I +++   V   ++  N     + ACCPFH+EKTPSF  +  K F
Sbjct: 29  KIPRSFIDDLITRHDIVDVVDARVKLKKQGKN-----FGACCPFHNEKTPSFSVSQEKQF 83

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIR 119
           Y+CF C V G+ L F+       F+E+++ L++  G+ +P  D       +   +  L  
Sbjct: 84  YHCFGCGVHGNVLDFVMEFDRLEFVEAIEELSSQLGLEVPREDGGKPSGPRAAEKRSLYD 143

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            + + + F+   L+    K    YL  RG+    ++ F +GY PD    +R    +   S
Sbjct: 144 QMGLISQFYQSQLRTPDGKTAIDYLKNRGLSGEVVQKFGIGYIPDQWDMVRSRFGRDPES 203

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ ++  G+LI+ D+    YDRFR R++FPI   RG+VI FGGR L    + KYLNSPET
Sbjct: 204 QKALVTTGMLIENDSGRR-YDRFRGRVMFPIHDRRGRVIGFGGRVL-GDGTPKYLNSPET 261

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  +  L   ++  +          +++VEGYMDV++L Q GV   V+SLG
Sbjct: 262 PIFHKGRELYGLYEVLQAHREPAK----------LLVVEGYMDVVALAQFGVDYAVASLG 311

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T   L+ L++ +  +V C+DGD  G  AA++A++  L  L  G ++ F+ L  GEDP
Sbjct: 312 TATTSDHLQTLFRQTSTVVCCYDGDRAGREAAWRAMEQALPFLTDGRQLKFMFLPDGEDP 371

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS IR  GK AFE+   +++PL + L+         ++ +  A+L I     I+ +    
Sbjct: 372 DSCIRAEGKDAFEERTTQAMPLTEFLFNTLMLQVDTSSKEGMAKLSILAVPLIDKVPGGT 431

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  + +  +L    +  + +                    S++ +++  +     K+
Sbjct: 432 LRLYLRELLGKKLGLPDEAQLQQL------------------ISKQGIETKKIATPEIKR 473

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             +REA  +  LI  P  +     E+ D    +     L   +             ++ +
Sbjct: 474 TPMREA--IALLIQKPNFVNSLEFEMTDFEGIDVPGLNLLLSIVDKCRTNPNITTGQLLE 531

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF--RLLSRQKEE 597
                    ++ +L                   D  Q     L    R   + + +Q E+
Sbjct: 532 HWRGNKQEAMMARLAAWELPLS----------DDEDQTLNVFLDAMDRIIGQCVKQQIEK 581

Query: 598 IEKQIAQVTAKGEAEKTAILI 618
           ++ +   V    E ++   L+
Sbjct: 582 LQAKSNTVGLSVEEKQELQLL 602


>gi|218708435|ref|YP_002416056.1| DNA primase [Vibrio splendidus LGP32]
 gi|218321454|emb|CAV17406.1| DNA primase [Vibrio splendidus LGP32]
          Length = 583

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 175/632 (27%), Positives = 292/632 (46%), Gaps = 61/632 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I +++   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIVDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQTD 116
           +CF C V G+ + F+       F+E+++ LA+  G+ +P      E         + + +
Sbjct: 60  HCFGCGVHGNAIDFIMEFERLDFVEAIEELASFLGLDVPREQRSGEISTAPRANSEQKRN 119

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L+   ++F+   LK + +K    YL  RG+    ++ F +GY  D    +R++  Q+
Sbjct: 120 LYDLMGGISNFYRSQLKISANKPAIDYLKNRGLSGEIVQKFGIGYVADEWDLVRKNFGQQ 179

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
             +++ ++  G+LI+ D     YDRFR R++FPIR  RG+VI FGGR L +  + KYLNS
Sbjct: 180 KEAQDMLVTGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-EDGTPKYLNS 237

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +FHKGK LY  +  L   +              I++VEGYMDV++L Q GV   V+
Sbjct: 238 PETPIFHKGKELYGLYEVLQAYR----------EPPQILVVEGYMDVVALAQYGVDYSVA 287

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T   +++L++ +  +V C+DGD  G  AA++A++  L +L  GN + F+ L  G
Sbjct: 288 SLGTSTTGDHVQMLFRQTSTVVCCYDGDRAGKEAAWRALENALEYLKTGNTLKFLFLPDG 347

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCINH 414
           EDPDS+IR +G+ AFE+L+  + PL   L+    E    N  T + ++ L  H    IN 
Sbjct: 348 EDPDSYIREHGQAAFEQLVHNATPLSTYLFDNLIEIHKLNLGTTEGKSALRAHASALINK 407

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I D      Y Q + ++L       + E +G+    ++   H     P            
Sbjct: 408 IPDS-----YFQELLEKL-------LDERTGFDNQLRRARVHTKNPTPQPHKELKRTPM- 454

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                       ++  LI +P+         +        L  L+  +        +   
Sbjct: 455 ----------REVIALLIQNPSYADMVPDLSSVKGLQLPGL-SLFVEVLDKCHAHPHINT 503

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            ++ +         LL +L              +  +  +     Q +          +Q
Sbjct: 504 GQLLEHWRHNKHEALLSRLASWEIPLD-EDNQEDIFLDSLDNILAQCV---------EKQ 553

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            E ++ +   V     AE+   L++++ ++  
Sbjct: 554 IENLQAKARSVGLS--AEEKRELLALMLDLKA 583


>gi|78221615|ref|YP_383362.1| DNA primase [Geobacter metallireducens GS-15]
 gi|78192870|gb|ABB30637.1| DNA primase [Geobacter metallireducens GS-15]
          Length = 588

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 165/635 (25%), Positives = 287/635 (45%), Gaps = 52/635 (8%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M+  P D I+++     I +++  YV   +   N     Y   CPFH EKTPSF+ N ++
Sbjct: 1   MSLIPDDKIREVRERASILDVVSDYVSLRKSGAN-----YQGLCPFHGEKTPSFNVNPAR 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDL 117
           G ++CF C V G+ ++F++ + G SF E+V+ LA   GV +        +K     + +L
Sbjct: 56  GIFHCFGCGVGGNAITFIARMEGLSFPEAVKFLAKRVGVEIEDRPVSAAEKRRLDEREEL 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             ++++A  F+  +L ++        YL+ RG+D    E + LG+APD    L  HL+ +
Sbjct: 116 HGIMDLAVGFYREALERSEEGGTARRYLEGRGVDRATAEAYCLGFAPDRWDFLARHLQHR 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
               E   + GL +   +    YD FRNRL+F I    G+ I FGGR L      KY+NS
Sbjct: 176 SVPLELAEKLGL-VRRRDGGGFYDTFRNRLLFTITDIHGRAIGFGGRVL-DDSLPKYINS 233

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ ++HK + L+    A   ++           ++  I+VEGY D L+L QAGV+NVV+
Sbjct: 234 PESPIYHKSEVLFGVSLAKGAMR----------ETASAIVVEGYFDHLALYQAGVRNVVA 283

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           + GTALTE  ++LL + +  +   FD D  G +A  +A+DL L     G   + V L+ G
Sbjct: 284 TCGTALTEGHIKLLKRYAGNVYTLFDADSAGRKATLRAMDLCLD---AGFPAHVVELTAG 340

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDSFIR  G   F   + ++ P+VD  +++   +    T + + ++   +   +  + 
Sbjct: 341 EDPDSFIRKEGAETFSARLAKARPVVDYFFRQLVRDEDTGTVEGKVKVIDEMAPRLARVS 400

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +   R  Y + I   L    +    +  G        A  RD++ P+Q   +        
Sbjct: 401 NAIERELYVREISRVLGVDVRSLARKIGGSSSP----AAPRDERAPAQSRRKKGATP--- 453

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  +  +P + +          +   +   +   +       K     E
Sbjct: 454 -------EEMLLSLMGRYPEVAERVRNHDPARIFG-PQFLPVAEAILERIGAGKPVEWSE 505

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I           L++  + + R A           VDV + + Q  A  +R  L   + +
Sbjct: 506 ILD---------LVEGGEERGRIAAFLVNDDHLADVDVHKAFDQCRAALERNSL--GRMK 554

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           E+ +++A      ++ +   L++ +  +  +  Q+
Sbjct: 555 ELARELAATDP--DSPRYRDLLAEIDALRNRKSQL 587


>gi|253580850|ref|ZP_04858113.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847920|gb|EES75887.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 598

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/611 (26%), Positives = 261/611 (42%), Gaps = 37/611 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  D I+++ +   I +++ QYV  ++R +      Y+  CPFH+EKTPSF    +K 
Sbjct: 1   MRYSDDIIEEVRMKNDIVDVVSQYVKLNKRGS-----TYFGLCPFHNEKTPSFSVTPAKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+  +F+      +F E+++ LA  AGV LP      + +KK + +  L+
Sbjct: 56  MYYCFGCGAGGNVFNFVMEYENYTFGEALKHLADRAGVQLPKIEYSGEAKKKAERRAALL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A  +F++ L+    ++ H YL  RG+    I  F LGY+      L ++L+ K +
Sbjct: 116 EINKLAAGYFYYQLRRENGRQAHEYLTGRGLSEETIRKFGLGYSDKYSDDLYKYLKSKNY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S+E + ++GL          YD+F NR+IFPI     +VI FGGR +      KYLNSPE
Sbjct: 176 SDELLRDSGLFNVD-ERRGMYDKFWNRVIFPIMDVNNRVIGFGGRVM-GDGKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K +NLY    A                 +++IL EGYMDV+S+ QAG  N V+SL
Sbjct: 234 TTIFDKSRNLYGLNVAR------------TTRKNYLILCEGYMDVISMHQAGFTNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     LL + +  ++L +D DD G+RAA +AI +       G     V L   +D
Sbjct: 282 GTALTSGHASLLKRYTQEVLLLYDSDDAGVRAALRAIPI---LREAGVSSRVVNLKPHKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G   FEK + +++                  P  +          +  + D+
Sbjct: 339 PDEFIKALGAEEFEKRLEQAMDSFMFRVHMAEREFPMEEPQGQNRFFERCAQMLLELSDE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +AI    +             G    K      +  P       +  + K   
Sbjct: 399 LERNLYIEAIVKDYRSSGISVENLKKRVGALAMKGTPAEQRIQPKP---VGAGQQKKKES 455

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  +L  L+ +P I     + +    +     +++   L+    +     P  + 
Sbjct: 456 AAEKAQKLMLTWLVTYPGIFDTVEKYIQPSDFVVPLYRQVAEMLYQQHRDG-DVNPARLM 514

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR---------FR 589
               +      +  L               A    V +   ++L    R          +
Sbjct: 515 NAFIDSEEQREVSSLFNATIHLETPEEQNRAFSDAVIRIKDESLKERNRTWDPTDIQGLQ 574

Query: 590 LLSRQKEEIEK 600
            L + K+E+E+
Sbjct: 575 ELVKAKKELEE 585


>gi|90020364|ref|YP_526191.1| DNA primase [Saccharophagus degradans 2-40]
 gi|89949964|gb|ABD79979.1| histidine kinase [Saccharophagus degradans 2-40]
          Length = 656

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 175/671 (26%), Positives = 281/671 (41%), Gaps = 64/671 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI DLL  + I  +I   V   +   N     Y ACCPFH+EKTPSF  +  K F
Sbjct: 3   RIPQSFIDDLLNRLDIVEVIDHRVKLKKAGKN-----YSACCPFHEEKTPSFTVSPDKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120
           YYCF C   G+ + FL       F+++V+ LA +AG+ +P    +   K  K Q  L  +
Sbjct: 58  YYCFGCGANGNAVGFLMEYERQGFVDAVESLARVAGMQVPKETTEKDVKHAKKQRGLYDI 117

Query: 121 IEVATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           + +A+ ++   LK    +     YL  RG+       F +GYAP    +L   L      
Sbjct: 118 LGLASTYYQKQLKEHSSRERAVSYLKGRGLSGAIARDFGMGYAPPGWDNLLVKLGTNEED 177

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              ++E+GL+I  +     YDRFR+R++FPI+ +RG+VI FGGR L   +  KYLNSPET
Sbjct: 178 RHLLVESGLVIRKEGEGKLYDRFRHRIMFPIKDTRGRVIGFGGRVL-GDDKPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KG+ LY  + A    +K  R          +++VEGYMDV++L Q G++N V++LG
Sbjct: 237 PVFSKGRELYGLYEARQSNRKLER----------LLVVEGYMDVIALAQYGMRNAVATLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA  E  L+L ++    +V CFDGD+ G  AA +A+   L  +  G ++ F+ L  G+DP
Sbjct: 287 TACGEDHLKLAFRYVNEVVFCFDGDNAGRTAAKRALVNALPAMEDGRQIRFLFLPEGQDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  G   F   I   +PL + L+    E    N+ + RA         +N + +  
Sbjct: 347 DTLVRQIGAERFTAQIENGVPLEEFLFDAVAEGIDVNSMEGRARFGKLAAPLLNTLPNGI 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK---- 475
            R      +  R        +           + A+    + P       + +       
Sbjct: 407 YRELMFANLAKRTGLSLDLLLELTKEKVSLVAEPAKPDPSQQPQPEPELPAHLGANIGTS 466

Query: 476 --LSKKPSLRE-------------------------------------AALLLTLINHPA 496
              S  P + E                                         + L+ +P 
Sbjct: 467 ISASTPPHIDESYAHIPPLEPDYVARTAQTSAPKSAPVKRSSITLNPVRLCTILLLEYPK 526

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           ++       A    ++ EL +L+  L     ++       I      R   E  + L   
Sbjct: 527 LVATLNNIPARAETEDEELTRLFD-LIEYIQQRPNCSFNSILGYWGGRYGIEQQQALADL 585

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           V +  + S  +  N    ++  Q    + ++ +  + QKE  + Q   +      EK   
Sbjct: 586 VANQLMGSVRSVENYNPEQELEQSLARIGQKLQKANNQKELAKLQAKGLGNLNNEEK--E 643

Query: 617 LISILHEVHIQ 627
               L  +  Q
Sbjct: 644 RFRELVRLQHQ 654


>gi|304391335|ref|ZP_07373279.1| DNA primase [Ahrensia sp. R2A130]
 gi|303296691|gb|EFL91047.1| DNA primase [Ahrensia sp. R2A130]
          Length = 625

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 211/653 (32%), Positives = 338/653 (51%), Gaps = 59/653 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ ++   IPI+++IG+ V +DR+K+N  KGD+WACCPFH EK+PSFHC +SKG
Sbjct: 1   MRFTPAFLDEVRDRIPIADIIGRRVTFDRKKSNQAKGDFWACCPFHGEKSPSFHCENSKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+V+RLA  AGVP+P VDP+  ++ K +  L  +
Sbjct: 61  RYHCFGCGVSGDHFRFLTELDGLSFPEAVERLADEAGVPMPAVDPQAAERAKEKATLHDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +++A DFF   L+ A   +   YL +RG+ +     F LGYAP SR +L+E+L  K   +
Sbjct: 121 MQLAVDFFRQQLQEAGGAKARAYLRDRGLSTSVQNEFGLGYAPSSRSALKEYLASKDVPK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           ++I   GL++ G +   SYDRFR+R++FPI  +R + IAFGGR LS     KYLNSPET 
Sbjct: 181 DQIEACGLVVHGPDIPVSYDRFRDRIMFPILDARSRPIAFGGRALSADVPAKYLNSPETE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K   LYN+  A   + +             +++ EGYMDV++L  AG++N V+ LGT
Sbjct: 241 LFSKSNVLYNYAKARKAVPRD----------GNLLVCEGYMDVIALHAAGIENAVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL L WK+ P+ VLCFDGD+ G+RAA +++DL+L  L       FV L  G DPD
Sbjct: 291 ALTEQQLGLAWKVGPKPVLCFDGDEAGIRAASRSMDLILPTLTDEKSAQFVNLPSGLDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G  +F+ LI  ++P  D L  R   N     P+E+  +E  +   +  I+D+ +
Sbjct: 351 DYVKKRGAQSFKTLITHAMPSSDFLISRRLFNAPIGKPEEKLAIERAILADVYSIEDKGM 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +++    +R  L  +F                            +L  +  +  +   +P
Sbjct: 411 QHHLRMYVRTHLANVFYNS-----------------------DSKLPPAPSLVSEFQNQP 447

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           + R+A +L   ++HP++L E Y+ + +I   ++  Q     L     E       +I+ +
Sbjct: 448 ATRDAIILGLAVHHPSVLYEFYESIGEIAMVDDRYQTFCHELLRLSDEFDDLDVAKIY-K 506

Query: 541 LCERGFGELLKQLDRQ--------------VRDAGLWSATTEANIVDVRQGYQQALALYK 586
           L    F ++L+++  +              +    L       +     +   +   L  
Sbjct: 507 LLSEDFHDVLEEVHGKPFEVALTQHYTYSGMMGHNLKKRFPMWSPDMPLRLVHEVFQLLL 566

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              ++ R    +E ++    +  +          L ++ I  HQ++   A  +
Sbjct: 567 DQYVIGR----LELELKTYDSATDVAL------HLRKIEI-FHQMKDDNAQKD 608


>gi|158313962|ref|YP_001506470.1| DNA primase [Frankia sp. EAN1pec]
 gi|158109367|gb|ABW11564.1| DNA primase [Frankia sp. EAN1pec]
          Length = 624

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 150/648 (23%), Positives = 259/648 (39%), Gaps = 49/648 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I+++IG +V           G     CPFHDEK+PSF+   S GF
Sbjct: 4   RIRDADIALVRERSLIADVIGDHVQLRPVG----GGSLVGLCPFHDEKSPSFNVRPSVGF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119
           ++CF C+  GD  +F+  + G +F E+V+RLA  AG+ L         +     +  L+ 
Sbjct: 60  FHCFGCNEGGDVYAFIRKIDGLTFPEAVERLARRAGITLTYEGGGTTSRAVTSQRQRLLD 119

Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              +A +F+   L  +   +    +L  RG D  A E F LGYAP S  +L  HL  + F
Sbjct: 120 AHRLAAEFYVEQLHSSPDARAGWEFLASRGFDRAAAEQFGLGYAPSSWDALTRHLLARRF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--KGESVKYLNS 236
           + E++   GL   G       DRF +RL++PIR   G+V+ FGGR L+       KYLN+
Sbjct: 180 TAEELELGGLAKRG-GRGGLIDRFHHRLLWPIRDLGGEVVGFGGRRLAEGPDAGPKYLNT 238

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
            ET LF K K LY    A   + +             +++VEGY DV++   AGV   V+
Sbjct: 239 AETPLFKKAKLLYGADLARREIARRY----------QVVVVEGYTDVMACHLAGVPTAVA 288

Query: 297 SLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
           S GT+     + ++ +        +  ++  FDGD  G  AA +A +     +    +  
Sbjct: 289 SCGTSFGADHVAIVRRLLMDSDARTGEVIFTFDGDKAGQAAALRAFEYEDRFVT---QTF 345

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
             +   G DP      +G  A   L+    PL +   +   +    NT + R        
Sbjct: 346 VAVQPDGLDPCDLWTQHGDAAVRDLVASRQPLFEFAIRGVIDRYDLNTTEGRIAALDAAA 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             +N +KD  +R+ Y+  +   L  L ++++ E  G         +HR Q G ++ +   
Sbjct: 406 PLVNRLKDAGMRHRYAVNLDRWLGFLDERFVVERVG---------QHRSQAGAAEGVGAR 456

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
             +        ++ E   L   + HP +    +  L+   +     + +   +       
Sbjct: 457 RRLDPAPDDATAIVERETLKLALQHPGLAGPMFDTLSTELFTVPAHRAVREAIAVAGGVC 516

Query: 530 KYF----LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
                   P      + +    E   +L R V    +     +    DV   Y       
Sbjct: 517 AGLYAAGDPSGWVAAVVDATPDE---ELRRFVLALAVEGVLCDH---DVDDRYVDDQMSR 570

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +   ++R+  E++ ++ ++    + +        L  +     Q+  
Sbjct: 571 VQELHVTRRIRELKSRVQRLNPASDTDAFNRAFGELIALEQHKLQLRE 618


>gi|254491217|ref|ZP_05104398.1| DNA primase [Methylophaga thiooxidans DMS010]
 gi|224463730|gb|EEF79998.1| DNA primase [Methylophaga thiooxydans DMS010]
          Length = 572

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/612 (26%), Positives = 271/612 (44%), Gaps = 51/612 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI +LL  + I ++I   V   +   N       ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPTQFIDELLARVDIVDIIDTRVPLKKAGKNLH-----ACCPFHNEKTPSFTVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G  + FL      SF E++Q LA   G+ +P    +      ++  L  L++
Sbjct: 60  HCFGCGAHGTAIGFLMEYDQLSFPEAIQELADHVGMTVP--TTQQASLSPVKQSLYDLMD 117

Query: 123 VATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
               ++ H L+   + +    YL  RG+    +E+F +G APD   ++           +
Sbjct: 118 KVGQYYVHQLQTHPQRQAFVDYLKRRGLSQKTVELFGIGMAPDGWDNVLRTFGSNPQQTK 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           ++++ GLLI  D    +YDRFRNR++FPI   RG+VI FGGR L    + KYLNSPET +
Sbjct: 178 QLLDGGLLIKNDKG-RTYDRFRNRIMFPIWDRRGRVIGFGGRVL-DDSTPKYLNSPETPI 235

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHKG  LY  + A    +K  R          I++VEGYMDV++L + G+ N V++LGT+
Sbjct: 236 FHKGAELYGLYQARKANRKLER----------IVIVEGYMDVIALAEHGISNAVATLGTS 285

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T   LRLL + +P +V CFDGD  G  AA++A +  L  L    ++ F+ L  GEDPDS
Sbjct: 286 TTADHLRLLLRAAPEVVFCFDGDRAGRDAAWRAAENALPMLGGNQQLKFMFLPDGEDPDS 345

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +   G  AF + +V +    +  ++         + D RA L    K  + H+     R
Sbjct: 346 LVSEQGAEAFNERVVNAQNYSEFFFETLGSQVDLASMDGRARLVEMAKPYLKHVPAGVYR 405

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               Q + +  +              +  K+ A+ +     +                  
Sbjct: 406 DMLEQRLAELSKTNIATLNKHLEKPAQQQKRPAKKQAMATMTPI---------------- 449

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                 +  ++ +P + +E   ++A I+        +   L     +  +     + +R 
Sbjct: 450 ---RMAITIVLQYPILAREI-DDVAAIQSVKQPGVNILQELLETLHQHPHLTTAALLERW 505

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            ++  G  L++L               +   D  +     +    +    S++  E+  +
Sbjct: 506 RDKENGAHLQKLA----------LQPLSLSADALKHELTGIVSRLQKEAKSQRINELTSK 555

Query: 602 -IAQVTAKGEAE 612
             +++T   +AE
Sbjct: 556 PFSELTEAEKAE 567


>gi|291451170|ref|ZP_06590560.1| DNA primase [Streptomyces albus J1074]
 gi|291354119|gb|EFE81021.1| DNA primase [Streptomyces albus J1074]
          Length = 634

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 148/654 (22%), Positives = 268/654 (40%), Gaps = 45/654 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  + +KG 
Sbjct: 4   RINDEDVKAVRDAVPIDAVVSEYLSL----RNAGGGNLKGLCPFHDEKSPSFQVSPAKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD ++F+  +   +F E+V+RLAA AG+ L   +       +   +  LI 
Sbjct: 60  FHCFGCQEGGDTITFVRKVDHLTFSEAVERLAAKAGITLRYEEGGYNPSHQRGERIRLIE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             + A +F+   L     +    +L ERG D  A   F +GY+P     L  +LR +GF+
Sbjct: 120 AHKAAAEFYAKQLDGPEAETGRRFLAERGFDQAAATHFGIGYSPVGWDHLTRYLRGQGFT 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           ++++I +GL    D      DRFR RL++PIR   G+V+ FG R L + ++  KYLN+PE
Sbjct: 180 DKELITSGLA--QDGRRGPVDRFRGRLMWPIRDIGGEVVGFGARRLREDDNGPKYLNTPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K + LY    A   + K+ R           ++VEGY DV++   AG+   V++ 
Sbjct: 238 TPIYRKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGITTAVATC 287

Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           GTA  +  +++L +L       R++  FDGD  G +AA +A +               + 
Sbjct: 288 GTAFGQDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIA 344

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  A   L+    PL +   ++        TP  RA         + 
Sbjct: 345 PDGMDPCDLRLAKGDEAVADLVEPRTPLFEFALRQIVSRYDLETPAGRAAALDEAGPVVA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP----------S 463
            IK    ++  +  +   L  L  +++    G    W ++        P           
Sbjct: 405 RIKSASSQHEVAVQLAGMLGILDTQFVVRRIGQLARWARDRGSDAGPAPRRADVAGHAVE 464

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
               + S     L       E  LL   +  P ++   +       +       +   + 
Sbjct: 465 TSAPRFSGPALNLRSPAFTTERELLKLALQRPELVSPAFDAYGSDEFTAAPYAAVREAIE 524

Query: 524 SDFVEQKYFLPE-EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +       +   R+ E    + ++ +  ++    +   T +       + Y    
Sbjct: 525 EAGGAELGADLGMDYLTRVREAAPDDTVRAMVTELAVEAIRRRTVD-------EVYAGEQ 577

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +  R R + R+  +++    +V A+G+  + A + + L  +      + +  A
Sbjct: 578 LVKVRLRAVERRIRDLQGTFTRVAAQGDQTQLASVQNELWVLQQYDRSLRNNGA 631


>gi|311278025|ref|YP_003940256.1| DNA primase [Enterobacter cloacae SCF1]
 gi|308747220|gb|ADO46972.1| DNA primase [Enterobacter cloacae SCF1]
          Length = 581

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 177/632 (28%), Positives = 300/632 (47%), Gaps = 60/632 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----WHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL     +    YL +RG+ S  I  F +GYAP    ++ +       +
Sbjct: 119 LMDGLNAFYQQSLNQPAAEPARQYLTKRGLSSEVISRFAIGYAPPGWDNVLKRFGANPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R+++PIR  RG+V+ FGGR L      KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMYPIRDKRGRVMGFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A   + +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQAVAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++++  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         +TPD RA+L       I+ +  + 
Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLMPQVDLSTPDGRAQLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +                     P  +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDAQLERL-------MPKQAENSAPRPVPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNE---LQKLWSFLFSDFVEQKYFLPEE 536
                  L+  L+ +P +          +   N E      L+S L +  + Q      +
Sbjct: 452 -----RILIGLLVQNPELAALV----PPLTGLNPEKMAGLALFSELVNSCLAQPGLTTGQ 502

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + ++         L++L        +W    +  I    + +  +L  +    +L  ++E
Sbjct: 503 LLEQYRGTKAAATLEKL-------SMWDDIADKEI--AEKTFTDSLN-HMFDSMLELRQE 552

Query: 597 EIEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627
           E+   IA+    G  +E+   L +I  E+  +
Sbjct: 553 EL---IARDRTHGLSSEERRELWTISQELAKK 581


>gi|259907101|ref|YP_002647457.1| DNA primase [Erwinia pyrifoliae Ep1/96]
 gi|224962723|emb|CAX54178.1| DNA primase [Erwinia pyrifoliae Ep1/96]
 gi|283476902|emb|CAY72759.1| DNA primase [Erwinia pyrifoliae DSM 12163]
          Length = 581

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 178/629 (28%), Positives = 278/629 (44%), Gaps = 54/629 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATLYGLEIPYESGSGPSQLERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    DF+  SL          YL +RG+    I+ F +G+AP    +  +        
Sbjct: 119 LMTGLRDFYQQSLGQGSSSGARGYLAQRGLSDEVIKHFSIGFAPAGWDNALKRFGSNPDD 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + + +AG+L+  ++   SYDRFR R++FPI   RG+VI FGGR L      KYLNSPET
Sbjct: 179 RQSLTDAGMLV-TNDQGRSYDRFRERVMFPIHDKRGRVIGFGGRVL-GDGMPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + AL              +   +++VEGYMDV++L Q GV   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEALK----------NHPAPGKLLVVEGYMDVVALAQFGVDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA+L       +  +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSTFLYDTLLPQVDLSTPDGRAQLATLALPLLRQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + D+L       + +         K       K  +                
Sbjct: 407 LRIYLRQVLGDKLGIPDHIQLEKLFPEKAESAKPVAQPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  LI +P +           + +      L+  L S  V        ++ +
Sbjct: 452 -----RILIGLLIQNPQLATIVPPLDGLEQSETPGF-PLFIELVSTCVAHPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                 F + L+ L                 + D  +   Q          L R+ EE+ 
Sbjct: 506 LYRGTEFSQSLETLATW----------NHMIVDDEVETMFQDALASMYNNALERRLEEL- 554

Query: 600 KQIAQVTAKG-EAEKTAILISILHEVHIQ 627
             IA     G  AE+   L ++   +  Q
Sbjct: 555 --IAHDRTHGLNAEERRELWTLSQALKKQ 581


>gi|260902498|ref|ZP_05910893.1| DNA primase [Vibrio parahaemolyticus AQ4037]
 gi|308109801|gb|EFO47341.1| DNA primase [Vibrio parahaemolyticus AQ4037]
          Length = 586

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 173/635 (27%), Positives = 290/635 (45%), Gaps = 64/635 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---------EKKEKI 113
           +CF C   G+ + F+       F+E+++ LA+  G+ +P               +     
Sbjct: 60  HCFGCGAHGNAIDFMMEFERLEFVEAIEELASYLGLDVPREQRSGGSGQFKSGPQASSSE 119

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+ + LK    K    YL +RG+    ++ F +GY  D    +R++ 
Sbjct: 120 KRSLYDLMGSIAQFYRNQLKQPSSKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q   +++ ++  G+LI+ D     YDRFR R++FPIR  RG+VI FGGR L +G + KY
Sbjct: 180 GQNKDNQDMLVTGGMLIENDKGNR-YDRFRGRIMFPIRDRRGRVIGFGGRVLGEG-TPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAHREPA----------QILVVEGYMDVVALAQYGVDY 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   +++L++ +  +V C+DGD  G  AA++A++  L  L  GN + F+ L
Sbjct: 288 SVASLGTSTTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQFLKTGNTLKFLFL 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK AFE+ I ++ PL   L+    E    N    + ++ L  +    
Sbjct: 348 PDGEDPDSYVRKYGKAAFEQQIEQATPLSSYLFDNLIELHQINLGNNEGKSALRAYASAL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D   +                             ++       + P +++ ++  
Sbjct: 408 IDKIPDPYFQ---------------------ELLEELLHERTGFDNRLRQPRKKISETRP 446

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
              K  K+  +RE  ++  LI +P+  Q      +        L  L++ +        +
Sbjct: 447 QPHKEIKRTPMRE--VIALLIQNPSYAQMVPDLSSVRDLSIPGL-SLFADVLDKCQAHPH 503

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +         LL +L              E  +  + +   Q +         
Sbjct: 504 INTGQLLEHWRNSQNEALLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV--------- 553

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            +Q E ++ +   V     AE+   L++++ ++  
Sbjct: 554 EKQIENLQAKARSVGLS--AEEKRELLALMLDLKA 586


>gi|261342494|ref|ZP_05970352.1| DNA primase [Enterobacter cancerogenus ATCC 35316]
 gi|288315135|gb|EFC54073.1| DNA primase [Enterobacter cancerogenus ATCC 35316]
          Length = 581

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 177/628 (28%), Positives = 297/628 (47%), Gaps = 52/628 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDKLEFVETVEELAAMHNLEVPYEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SLK++  +    YL+ RG+    I  F +GYAP    ++ +        
Sbjct: 119 LMDGLNAFYQQSLKHSAAEPARQYLNARGLSDDVIARFAIGYAPPGWDNVLKRFGGNSED 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L      KYLNSPET
Sbjct: 179 RKSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQENAEPPR----------LLVVEGYMDVVALAQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++++  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         +TPD RA+L       I+ +  + 
Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLMPQVDLSTPDGRAQLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +                     P+ +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKFAENGAARPAPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +  +              L  L+S L +  + Q      ++ +
Sbjct: 452 -----RILIGLLVQNPELAPQVPSLAGLNHEKLPGLG-LFSELVNTCLSQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                     L++L        +W    + +I    + +  +L  +    +L  ++EE+ 
Sbjct: 506 HYRGTKEAATLEKL-------SMWDDIADKDI--AEKTFTDSLN-HMFDSMLELRQEELI 555

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627
            +  + T    +E+   L  I  E+  +
Sbjct: 556 AR--ERTHGLSSEERRELWMINQELAKK 581


>gi|134300302|ref|YP_001113798.1| Fis family transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134053002|gb|ABO50973.1| DNA primase [Desulfotomaculum reducens MI-1]
          Length = 604

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 166/624 (26%), Positives = 277/624 (44%), Gaps = 40/624 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+++     I  +I +++  ++R  N     Y A CPFH EKTPSF+ N  +  
Sbjct: 4   RIPDSVIEEIRQRTDIVEVISRFIHVEKRGKN-----YLALCPFHQEKTPSFNINPERQM 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRL 120
           ++CF C V G+   FL  + G SF ESV+ L    G+ +P    PK   K+  +    ++
Sbjct: 59  FHCFGCGVGGNVFKFLMMVEGLSFPESVRSLGTKLGIEVPEEISPKERVKQGKKDRAFKI 118

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             +A DF+H  L          YL+ R +     E F+LG+AP    SL   L  KG S 
Sbjct: 119 YGLARDFYHFLLTKEIGIGAIRYLESRNLTDKTRETFELGFAPLGWDSLTGFLTAKGISG 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E++ + GL+     S   YDRFRNR++FPI  ++G+V+ FGGRT+ +    KYLNSPE  
Sbjct: 179 EELTKLGLVQKK-ESGGYYDRFRNRIMFPIWDNQGRVVGFGGRTMGEDNP-KYLNSPEGE 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
            F+KG+ LY    A   ++             + +L+EGYMDV+S  Q GV N V+SLGT
Sbjct: 237 YFNKGQLLYGLHIARKGIR----------EQGYAVLMEGYMDVVSTYQHGVTNAVASLGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T  Q ++L   +  +V+ +D D  G++AA +A D+       G +V    +   +DPD
Sbjct: 287 AFTRDQGKILMMYTHDVVIAYDADTAGIKAATRAADI---LQELGCQVRIATIVGAKDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +I+ +G   ++ +I  ++PLV     +  +         +  +   +   +  +     
Sbjct: 344 EYIQSHGLEGWQSIIDHAMPLVQYKLLQAAQKHGLQNAGAKQRILREVLPNLASVASAIE 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS--LVKGKLSK 478
                +     LQ  ++  + E   Y R  +K ++  D        + S+      +   
Sbjct: 404 LEETVKQAATVLQVNWETVLEEIKKYKRNSRKKSQIEDNFAKESHNISSARYFAPVRPKD 463

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             S  EA +L   + +   L+   QEL +  + NN  Q+++                   
Sbjct: 464 ARSNAEAGVLRFALENKEYLERILQELGNDFFQNNVYQRIFDV---HLGN---------- 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               E+    LL +LD   +         E    ++ Q     +   KR R    + +++
Sbjct: 511 ---KEQNSARLLDELDESSQRIVSSLLVQEIPGENMDQILSDFINTIKRTRE-KAKLDDL 566

Query: 599 EKQIAQVTAKGEAEKTAILISILH 622
             Q+A     G+ E+   L   ++
Sbjct: 567 LMQLAAAEKSGDTERVIELSRKIN 590


>gi|146309041|ref|YP_001189506.1| DNA primase [Pseudomonas mendocina ymp]
 gi|145577242|gb|ABP86774.1| DNA primase [Pseudomonas mendocina ymp]
          Length = 663

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 183/675 (27%), Positives = 299/675 (44%), Gaps = 85/675 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   +   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++++ LA  AG+ +P  +       ++ + + L  L
Sbjct: 60  YCFGCGAGGNALGFVMDHDQLEFPQAIEELAKRAGMDVPREEGGRGRTPRQPVDSPLYPL 119

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +E A + +  +LK+  + K    YL  RG+       F LG+AP    +L + L      
Sbjct: 120 LEAAAEHYRQALKSHPQRKYAVDYLKGRGLTGEIARDFGLGFAPPGWDNLLKQLGGDALQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+  ++   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKAMIDAGLLIENADNGRRYDRFRDRIMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  + +              I++VEGYMDV++L Q G++N V++LG
Sbjct: 239 AVFHKGQELYGLYEARKHNRDL----------DEIMVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L  L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDAAGRNAAWRALESTLPSLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF   +   + PL D  +++ +E     + + +A L       I+ I   
Sbjct: 349 DTLVRAEGTDAFRARINQHAQPLADYFFQQLSEEADPRSLEGKAHLVTLAAPLIDKIPGN 408

Query: 419 KLRYYYSQAIRDR----------------------------------------------- 431
            LR    Q + +                                                
Sbjct: 409 NLRALMRQRLSEITGLSGEALSQVASAPRSHAPSTISQAPSSDYPDYGDIPDSAYYDAMP 468

Query: 432 -LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA---AL 487
            L    Q    +   Y R       +  ++G             +  +     E+   + 
Sbjct: 469 DLGGYEQPAPPQQQAYERSNDGGKGNWKKEGGKWSKKGKGDFAPRAPRTAVSVESPHLSA 528

Query: 488 LLTLINHPAILQEQYQELADIRYDNNE--LQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
           L TL++HP + Q+         + + E    +L   L     +       ++  R     
Sbjct: 529 LRTLLHHPQLAQKVED---VSHFADEEDTYAQLLVALVGALQKNPGMRSLQLIARWHGTE 585

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
            G LL+ L  +      W  + +             LA  +R R L +     + +++++
Sbjct: 586 QGRLLRALAEKE-----WLISADNLEQQFFDTIT-TLAARQRERSLEQLLR--KARLSEL 637

Query: 606 TAKGEAEKTAILISI 620
           +A+ E ++   L+S 
Sbjct: 638 SAE-EKDQLRALLSR 651


>gi|317128327|ref|YP_004094609.1| DNA primase [Bacillus cellulosilyticus DSM 2522]
 gi|315473275|gb|ADU29878.1| DNA primase [Bacillus cellulosilyticus DSM 2522]
          Length = 604

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/634 (24%), Positives = 292/634 (46%), Gaps = 43/634 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I+++   I I ++I +YV   ++  N     +   CPFH EKTPSF  +  K  
Sbjct: 6   RVSEDIIEEIRKSIDIVDIISEYVQLKKQGKN-----FIGLCPFHGEKTPSFSVSPDKQL 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL- 120
           Y+CF C   G+  SF+    G  F+ESV+++A    + +P ++   ++    +  + ++ 
Sbjct: 61  YHCFGCGAGGNVFSFIMETEGLPFLESVKKIADRMNMAIPELEHVTDEATSKEDSITKIW 120

Query: 121 ---IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
                ++   FHH L +    K    YL  RG     I+ F++GYAP+S   L   L ++
Sbjct: 121 HNAHALSAKLFHHVLTSTDEGKEARDYLRNRGFTKEVIDTFQIGYAPNSWDFLASFLEKR 180

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            F  +++++ G+L   +     YDRFR+R+IFPI +++G +IAFGGR LS+G   KYLNS
Sbjct: 181 KFPMDEMVKCGILSVREFDQKPYDRFRDRIIFPIWNNKGDMIAFGGRILSEGNP-KYLNS 239

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ +F+K + LY F  A   ++K           +  IL EGY+DV+S  +AGV N V+
Sbjct: 240 PESSIFNKSETLYYFHKARPSIRKK----------NEAILFEGYVDVISAWKAGVDNGVA 289

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGTAL+  Q ++L +L+  ++LC+D D+ G  A  K   +       G +V   +L  G
Sbjct: 290 SLGTALSTTQAKMLRRLTDHVILCYDSDNAGQNATMKNAAI---LSEAGLQVRVAILPDG 346

Query: 357 EDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPD +I+  G   F + +I +SL L+   ++     ++     ER      +   ++ +
Sbjct: 347 MDPDDYIQKMGVDRFNKDVIGQSLTLMGFKFQYYRRGKNLKDDGERMTYIHQMIEEVSKL 406

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                R +Y + + +      +    +     +  K     R     +    Q  L    
Sbjct: 407 SHAVERDHYLRRLSEEFSLSLEALKQQQIQVYKQSKGKNEERKVVHSNFSKQQKRL---- 462

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E  L+  ++ + ++  +  +++    ++ +E Q + + LFS + +     P 
Sbjct: 463 -LLAYENAERILIAHMLKNNSVANQVQRKVGG-AFNIDEYQAIAAHLFSYYADGFEPNPS 520

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
              + L +     +  +L        + + T E +  ++    +Q     KR      + 
Sbjct: 521 SFIEYLEDDKLKRITSELA-------MMTITEEMSEQELADYIKQIKNYPKRL-----EV 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           E+++ +  ++    E  + A +   + ++   I 
Sbjct: 569 EKLKVERKKLEEAEEYVEAAKIAMEIIKIEQDIK 602


>gi|220912144|ref|YP_002487453.1| DNA primase [Arthrobacter chlorophenolicus A6]
 gi|219859022|gb|ACL39364.1| DNA primase [Arthrobacter chlorophenolicus A6]
          Length = 644

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 148/667 (22%), Positives = 251/667 (37%), Gaps = 65/667 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ I ++     I  ++  YV           G Y   CPFHDE++PSF      G Y
Sbjct: 5   IKREDIDEVRQRTDIKEVVDGYVTLKGAG----LGTYKGLCPFHDERSPSFTVRPQVGRY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLIR 119
           +CF C   GD ++F+      SF E+V++LAA  G  L   D       ++   +  L+ 
Sbjct: 61  HCFGCGEDGDVIAFVQKQDHSSFHEAVEKLAARIGYELRYEDGGTGPSREEVGRRQRLLD 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             ++A +FF   L          +L  RG D  A E F  GYAP    +L +HLR +GF+
Sbjct: 121 AHKIADEFFRDQLLTPGAGEARNFLFGRGFDRAAAEHFGCGYAPQGWDALLKHLRGRGFT 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           + ++   G+  +G+     YDRFR RLI+PI+   G  I FG R L + +   KYLN+PE
Sbjct: 181 DAELKLTGMFSEGNR--GIYDRFRGRLIWPIKDIAGDTIGFGARKLYEDDQGPKYLNTPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A   + K             +++VEGY DV++   AG+   V++ 
Sbjct: 239 TTLYKKSQVLYGIDLAKKSIAK----------ERQLVVVEGYTDVMACHLAGITTAVATC 288

Query: 299 GTALTEYQLRLLWK------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           GTA     +++  +          +V CFDGD  G +AA +A +          +    +
Sbjct: 289 GTAFGTEHIKIARRLLSDDGTGGEVVFCFDGDAAGQKAALRAFEEDQRFTA---QTYVAV 345

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP    +  G  A + LI    PL +   +   +  + +T + R          +
Sbjct: 346 EPTGADPCDLRQTRGDAAVQALISSRRPLFEFAIRASLKRHNLDTVEGRVAALREAAPVV 405

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW---------------------- 450
             I+D  +R  Y++ +   L    ++     +   +                        
Sbjct: 406 GQIRDAGIRPAYARELAGWLGMSVEEANRAVAVAMKRGSAGPQAGAGAPAAQQGGQAAGR 465

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ-EQYQELADIR 509
              A               S  +       +  E   L   +  PA+L    +   A  R
Sbjct: 466 PAEAGGPGVAAGPASGAVPSYHRPDPRDPVASMERQALEVALQEPALLSGAVWDRFAAAR 525

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC---ERGFGELLKQLDRQVRDAGLWSAT 566
           +     Q +   +           P    + +          L+ +L             
Sbjct: 526 FATPAFQAVHDAM-RATGPGMVTDPARWVEHVMHEVPEPLRPLVSELA---------VVP 575

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
             A+  +  Q Y + +        ++R K +   Q+ ++    + E    L   L  + +
Sbjct: 576 LPASTEEGVQKYCRDILSRLFELQITRVKADKMGQLQRLDPAADPEAFQRLNRELMMLEM 635

Query: 627 QIHQIES 633
           +   + S
Sbjct: 636 ERRSLRS 642


>gi|299822899|ref|ZP_07054785.1| DNA primase [Listeria grayi DSM 20601]
 gi|299816428|gb|EFI83666.1| DNA primase [Listeria grayi DSM 20601]
          Length = 615

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/643 (23%), Positives = 288/643 (44%), Gaps = 42/643 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +     I ++I  YV   +   N     Y   CPFH EKTPSF  +  K  
Sbjct: 4   RIPEEVIDRVRSEADIVDIISNYVQLKKAGRN-----YSGLCPFHGEKTPSFSISPEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           ++CF C   G+  SFL    G SF+E+V++ A ++ V +          +  ++   Q  
Sbjct: 59  FHCFGCGKGGNVFSFLMEHDGLSFVEAVKKTAELSHVDVGIEWDDEPAEQKTEQSNDQFK 118

Query: 117 LIRLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           +I + +++  F+H+  L+         YL ERG+   +I  F++G+AP+   ++   L +
Sbjct: 119 MIDMHQLSAKFYHYILLETEEGSEALSYLKERGLSEQSIISFQIGFAPNHSSTITSFLAK 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G + +    AGLL+  +N     DRFRNR++FPI++ R Q I F GR  ++    KYLN
Sbjct: 179 RGMNLDLAEIAGLLVRRENGD-LVDRFRNRIMFPIKNDRDQAIGFSGRLFNQDNGPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +PET +F+K   LY+   A   +++             I+L+EG+MDV++   AGV N V
Sbjct: 238 TPETPIFNKRNVLYHLSDARQEIRR----------RKEIVLLEGFMDVIAASSAGVGNGV 287

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +++GT+LT   + L+ K++ +IV+C+DGD  G+ A  KA  ++      G  V  + L +
Sbjct: 288 ATMGTSLTTEHIGLIRKITNQIVICYDGDSAGIEATQKAGRMLEADPHFGLAV--LQLPQ 345

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF-NTPDERAELEIHLKNCINH 414
           G+DPD FI+ YG   FE +   +            +     + P E+A         I  
Sbjct: 346 GKDPDEFIQTYGPEKFEDIYAHNRSSWTAFLLSYLKQGKNLSNPQEQANYLEEAIMEIAK 405

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I     R  Y + +        +    + +   R      +H D       + + S    
Sbjct: 406 IDQAIEREIYLKQLATEFDLSLETLRQQLADSLRRKPVANQHADMPYSEPIIFEES---K 462

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +      + E  LL  +++      +  Q +    + +++ Q ++++L   + E      
Sbjct: 463 RNKGALVISEEQLLKAMLDSRENFMQIRQLMEGTDFYHDDYQAIYTYLIGFYAEGNTPDT 522

Query: 535 EEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                 L E+   F  L+  ++             EA        ++  +A  K+  + +
Sbjct: 523 NRFMDYLPEQEQAFKNLVATIEML-----------EAPEEQTTAAFRDYIASIKK-HVWT 570

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +++ E++K++ ++ ++ +A+     +  ++ +   +   +  E
Sbjct: 571 KKRSELQKKMQRLESENDAKALIETLQEINRIDKLLTARQFDE 613


>gi|119504972|ref|ZP_01627049.1| DNA primase [marine gamma proteobacterium HTCC2080]
 gi|119459258|gb|EAW40356.1| DNA primase [marine gamma proteobacterium HTCC2080]
          Length = 638

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 172/658 (26%), Positives = 273/658 (41%), Gaps = 62/658 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI DLL  + I  +I + V   +   N     + ACCPFHDEKTPSF  N  K F
Sbjct: 3   RIPQKFIDDLLDRVDIVEVIDRRVKLKKTGKN-----FSACCPFHDEKTPSFSVNPGKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIR 119
           YYCF C   G+ L FL       F E+V+ LA   G+ +P  +  P     +     ++ 
Sbjct: 58  YYCFGCGAGGNALGFLMDYERLEFPEAVESLAQTVGLQVPKEELRPGQTPPQDTNRPILE 117

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +E AT F+ HSL K+   KR   YL  RG+       F++G+AP    +L +       
Sbjct: 118 QLEQATRFYEHSLRKHPEAKRAVAYLKGRGLSGEIARAFRVGFAPPGWDNLLQTADNDAQ 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             +++ + G+L+  ++   +YDRFR+R++FPI  +RG+VIAFGGR L   +  KYLNSPE
Sbjct: 178 QIKRLTDGGMLV-TNDRGRTYDRFRDRIVFPILDARGRVIAFGGRVL-GDDKPKYLNSPE 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHK + LY  + A    +   R          I++VEGYMDV++L Q G+   V++L
Sbjct: 236 TPVFHKSRELYGLYQARKSERSLNR----------IVVVEGYMDVIALAQYGIGYAVATL 285

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +E  +  L++  P +V CFDGD+ G +AA++A++  L  +  G +  F+ +  GED
Sbjct: 286 GTATSEAHMERLFRHVPEVVFCFDGDEAGRKAAFRALESTLPVMQDGRQARFLFVPDGED 345

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  G    E L   + PL + L+    ++   +T D RA         ++ I + 
Sbjct: 346 PDSLVRARGAEHLEHLFSSATPLEEFLFDWVAKDLDVSTLDGRARFSKQAAPFVHLIPEG 405

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ------------------- 459
             +    Q++ DR            +                                  
Sbjct: 406 VFKTLMYQSLADRTGIDIDSLKRLQAPLPDLQADETNSAQSGFSGEAGAYHDTDQGYSSD 465

Query: 460 ------------KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                         P      S      L+         LL  L+ +P +       L  
Sbjct: 466 SDDAPPPGLDIEPYPDSEGASSEPHHDSLTPTSGSATQRLLGLLVLNPQLSSTLDATLMP 525

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
                     L   +  +   Q       +         G+LL +L  +           
Sbjct: 526 KE--QRRDIALLKDVIENINSQPDISTASLLGFWHGTPEGQLLTELAGR---------EP 574

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
             +   + +          R   LS+ K+E     A+        +   L+ ++ ++ 
Sbjct: 575 IEDPDQLSELADALFQQLLREGPLSQLKQEAALLKAKPYETLGDSEKQELMRLMRDIR 632


>gi|145595937|ref|YP_001160234.1| DNA primase [Salinispora tropica CNB-440]
 gi|145305274|gb|ABP55856.1| DNA primase [Salinispora tropica CNB-440]
          Length = 632

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 149/648 (22%), Positives = 252/648 (38%), Gaps = 43/648 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I+ +I   V           G+    CPFHDEK+PSF+ + ++  
Sbjct: 12  RIRDEDIALVRERTSIAEVISDTVTLRSAG----GGNLKGLCPFHDEKSPSFNVSPARNV 67

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-----VDPKIEKKEKIQTD 116
           +YCF C   GD + FL      SF+ESV+RLAA  G+ L         P+   ++  +  
Sbjct: 68  WYCFGCGAGGDAIKFLMDAEHLSFVESVERLAARVGLQLRYVATDHTTPRARPQQGQRQR 127

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L+     A +F+   L     +    +L  RG D  A E +  G+APD    L  HLRQ+
Sbjct: 128 LVAAHAAAVEFYRAQLTTPGARPAREFLARRGFDKAAAERYACGFAPDGWDLLTRHLRQQ 187

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLN 235
           GFS ++++ AGL     +  +  DRFR RL++PIR   G V+ FG R L   +   KYLN
Sbjct: 188 GFSHDELVTAGLSRPARSG-SLIDRFRRRLLWPIRDLTGDVVGFGARKLFDDDDSPKYLN 246

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +PET ++ K   LY    A   + K  +          +++VEGY DV++   AGV   V
Sbjct: 247 TPETPIYKKSHVLYGIDQAKREIAKQGK----------VVVVEGYTDVMACHLAGVPTAV 296

Query: 296 SSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           ++ GTA     + +L +       ++  I+  FDGD  G +AA +A D     +    R 
Sbjct: 297 ATCGTAFGTDHIGVLRRLLLDTDAVAGEIIFTFDGDAAGQKAALRAFDDDQRFVG---RT 353

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
              +   G DP       G+ A   L+    PLVD   +        +T D R E     
Sbjct: 354 FIAVSPDGMDPCELRLAKGELAVRDLVASREPLVDFALRHVIGRHDLDTVDGRVEAMRRA 413

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              +  IKD++ R  Y + +   L    +              K      +  P+Q    
Sbjct: 414 APLVAKIKDREKRPEYVRKLAGDLGMEIEPVQRAVLAAAHAPGK-TNTASRGAPAQPQSP 472

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S     +++      E   L   +  P +    +  +    Y N     + + + +    
Sbjct: 473 SPADSPQVT-----VEREALKLALQAPVLAGPMFDAVEATEYRNPVHVAVRAAVAAAGGA 527

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                     + +         + L  ++    L          ++   Y        ++
Sbjct: 528 AAATGGAVWIESVRHACEDLAAQALVGELAVEPLRI------DGELDPRYVSVTMARLQW 581

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             ++ +  E++ +I ++      ++       L  +      +  Q A
Sbjct: 582 GAVTGRIRELKSRIQRINPVSSKDEYFAAFGELLSLEQHARALREQAA 629


>gi|328882303|emb|CCA55542.1| DNA primase [Streptomyces venezuelae ATCC 10712]
          Length = 630

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 151/637 (23%), Positives = 268/637 (42%), Gaps = 45/637 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  + SKG 
Sbjct: 4   RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIR 119
           ++CF C   GD ++F+  +   SF E+V+RLAA AG+ L   +       +   +  LI 
Sbjct: 60  FHCFGCQEGGDTIAFVMKIDHLSFSETVERLAAKAGITLRYEEGGYNPGHQRGERIRLIE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             +VA  F+   L +   +    +L ERG D  A   F +GY+P     L  +LR KGFS
Sbjct: 120 AHKVAAQFYADQLGSPEAEIGRAFLAERGFDQAAAAHFGVGYSPAGWDHLTRYLRGKGFS 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           ++++I +GL    D      DRFR RL++PI+   G+++ FG R L   ++  KYLN+PE
Sbjct: 180 DKELILSGL--SQDGRRGPIDRFRGRLMWPIKDVGGEIVGFGARKLRDDDNGPKYLNTPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K + LY    A   + K  R           ++VEGY DV++   AGV   +++ 
Sbjct: 238 TPIYKKSQVLYGIDLAKKDIAKVSRA----------VVVEGYTDVMACHLAGVTTAIATC 287

Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           GTA     +++L +L       R++  FDGD  G +AA +A +               + 
Sbjct: 288 GTAFGGDHIKILRRLLMDNGSARVIFTFDGDSAGQKAALRAFEDDQKFAA---ETYIAIA 344

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  A   L+    PL +   ++  +     TP  RA         + 
Sbjct: 345 PDGMDPCDLRLAKGDEAVVDLVQPRTPLFEFALRQIVKRYDLETPAGRAAALDEAAPVVA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM------ 467
            IK+   ++  +  +   L  L  +++ +       W ++   +  +             
Sbjct: 405 RIKNIGAQHEVAVQLAGMLGILDTQFVVKRVAQLARWARDRGGKGPERQQGPQRGYDTAA 464

Query: 468 ---QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                S     L       E  LL   +  P ++   +       +       +   +  
Sbjct: 465 PAPAPSGPALNLRSPAHRTERELLKLALQRPELVSPAFDAYGVDEFTAPPYAAVRQCVQD 524

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                    P +    + E    + ++ L  ++    +++ T +       + Y     +
Sbjct: 525 AGGATGA--PADYLDAVREAAPNDTVRALVTELAVETIFAKTVD-------EAYAGDQLV 575

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
             R R + R+  +++  +A++ A+G+ E+ A + + L
Sbjct: 576 TVRLRAVDRRIRDVQGTLARLGAQGDPEQLAAVQNEL 612


>gi|294501281|ref|YP_003564981.1| DNA primase [Bacillus megaterium QM B1551]
 gi|294351218|gb|ADE71547.1| DNA primase [Bacillus megaterium QM B1551]
          Length = 602

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/632 (25%), Positives = 282/632 (44%), Gaps = 37/632 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +   + I ++I  YV   ++  N     Y+  CPFH E TPSF  +  K  
Sbjct: 4   RIPDEVIDRIRHSVDIVDVISDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL 120
           Y+CF C   G+  SF+  L G SF E+ Q+LA    +P    + P  E  +K    +I  
Sbjct: 59  YHCFGCGAGGNSFSFIMELEGLSFTEAAQQLAEKGDIPFEHEIHPHEEDNQKPSNKMIEA 118

Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E+   F+HH L      +  + YL  RG     I+ F++G+A DS   + + L ++GF+
Sbjct: 119 HELLKKFYHHLLVNTKEGQDAYDYLINRGFSREIIDEFEIGFALDSWEFVSKFLTKRGFN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPE 238
            +++  AGL+I  + + T +DRFR+R++FPI   +G+ IAF GR L + +   KYLNSPE
Sbjct: 179 PQEMEHAGLIIKRNQNETYFDRFRDRIMFPIADLQGKTIAFSGRLLKEIKGQPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F+K + LYNF  A  +++K          +  +IL EG+ DV+S  +AG  N ++++
Sbjct: 239 TSIFNKSRTLYNFHRAKKHIRK----------NQQVILFEGFADVISAVKAGCPNAIATM 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE Q +++ +    +++C+D D  G+ AA+KA  +       G  V   ++  G D
Sbjct: 289 GTALTEEQAKIIRRNVESVIICYDADSAGIEAAHKATAI---LTNVGCTVKIAVMPDGYD 345

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD +I+ YG   F+  +I  SL  +    +     R+     ER +    +   I+ +  
Sbjct: 346 PDDYIKEYGAEKFQNDVINSSLTFMAFQMRYLRRKRNLQNESERMQYIEDVLKEISLLTK 405

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R +Y + +             +     R  KK   +         + +  +VK  L 
Sbjct: 406 AVERDHYLRQLAQEFSISLDALKEQQYQVYRTEKKKKDNDSPNRN--NINRQPVVKRSLL 463

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  L+  ++    +       L   +++  E + L  +L++ + E     P   
Sbjct: 464 PAYQNAERFLIAHMLKDKDVAFRIQDRL-QGQFNVEEHRALVLYLYAYYEEGHEPNPSGF 522

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +RL E             +       +  +         Y Q + +Y +   + ++   
Sbjct: 523 IERLPESS--------LSSLASELAMMSINDELSEQALNDYIQTILIYPQRVAIEKK--- 571

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            E +  +   + +  K A +   + ++   + 
Sbjct: 572 -EAEKQEAERQKDYLKAATIAMEILQLKKTLK 602


>gi|295706628|ref|YP_003599703.1| DNA primase [Bacillus megaterium DSM 319]
 gi|294804287|gb|ADF41353.1| DNA primase [Bacillus megaterium DSM 319]
          Length = 602

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/632 (25%), Positives = 281/632 (44%), Gaps = 37/632 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +   + I ++I  YV   ++  N     Y+  CPFH E TPSF  +  K  
Sbjct: 4   RIPDEVIDRIRHSVDIVDVISDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL 120
           Y+CF C   G+  SF+  L G SF E+ Q+LA    +P    + P  E  +K    +I  
Sbjct: 59  YHCFGCGAGGNSFSFIMELEGLSFTEAAQQLAEKGDIPFEHEIHPHEEDNQKPSNKMIEA 118

Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E+   F+HH L      +  + YL  RG     I+ F++G+A DS   + + L ++GF+
Sbjct: 119 HELLKKFYHHLLVNTKEGQDAYDYLINRGFSREIIDEFEIGFALDSWEFVSKFLTKRGFN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPE 238
            +++  AGL+I  +   T +DRFR+R++FPI   +G+ IAF GR L + +   KYLNSPE
Sbjct: 179 PQEMEHAGLIIKRNQDETYFDRFRDRIMFPIADLQGKTIAFSGRLLKEIKGQPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F+K + LYNF  A  +++K          +  +IL EG+ DV+S  +AG  N ++++
Sbjct: 239 TSIFNKSRTLYNFHRAKKHIRK----------NQQVILFEGFADVISAVKAGCPNAIATM 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE Q +++ +    +++C+D D  G+ AA+KA  +       G  V   ++  G D
Sbjct: 289 GTALTEEQAKIIRRNVESVIICYDADSAGIEAAHKATAI---LTNVGCTVKIAVMPDGYD 345

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD +I+ YG   F+  +I  SL  +    +     R+     ER +    +   I+ +  
Sbjct: 346 PDDYIKEYGAEKFQNDVINSSLTFMAFQMRYLRRKRNLQNESERMQYIEDVLKEISLLTK 405

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R +Y + +             +     R  KK   +         + +  +VK  L 
Sbjct: 406 AVERDHYLRQLAQEFSISLDALKEQQYQVYRTEKKKKDNDSPNRN--NINRQPVVKRSLL 463

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  L+  ++    +       L   +++  E + L  +L++ + E     P   
Sbjct: 464 PAYQNAERFLIAHMLKDKDVAFRIQDRL-QGQFNVEEHRALVLYLYAYYEEGHEPNPSGF 522

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +RL E             +       +  +         Y Q + +Y +   + ++   
Sbjct: 523 IERLPESS--------LSSLASELAMMSINDELSEQALNDYVQTILIYPQRLAIEKK--- 571

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            E +  +   + +  K A +   + ++   + 
Sbjct: 572 -EAEKQEAERQKDYLKAATIAMEILQLKKTLK 602


>gi|227833615|ref|YP_002835322.1| DNA primase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184617|ref|ZP_06044038.1| DNA primase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454631|gb|ACP33384.1| DNA primase [Corynebacterium aurimucosum ATCC 700975]
          Length = 642

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/653 (21%), Positives = 252/653 (38%), Gaps = 47/653 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +    PI  ++G+YV                  PF DEKTPSFH    +G+
Sbjct: 5   RIPDSDIQAIRERAPIDEIVGEYVQLKPAG----YDSLKGLSPFKDEKTPSFHVRPQRGY 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118
           Y+CFS    GD  SFL  +   SF E+V+ +A   G  +         +++    +  LI
Sbjct: 61  YHCFSTGKGGDVFSFLMEMEQVSFPEAVEAVAQKIGYHINYQGGSTGARDEKPGTRRRLI 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              + A +F+   L+  +      +L +RG     I  F+ GYAP+   +  +HL + GF
Sbjct: 121 AANKAAHEFYRQQLETPQAAAGREFLLDRGFSKEIIYEFECGYAPEGWDTATKHLLRMGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           S E++  AG  I         DRF  RL++PI+   G VI FG R L   +   KY+N+P
Sbjct: 181 SFEELDAAG--ISKMGKRGPIDRFHRRLLWPIKDLSGNVIGFGARKLFDDDKLGKYMNTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+HK K L+    A   +                ++VEGY DV+++  AGV+  V+S
Sbjct: 239 ETMLYHKSKVLFGLDLAKRNIA----------EQHQAVVVEGYTDVMAMYAAGVKTAVAS 288

Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA     L++L             ++  FDGD+ G +AA +A +          +   
Sbjct: 289 CGTAFGADHLQVLRRLMLDDSYFHGELIYTFDGDEAGQKAAMRAFE---GEQKFTGQSFV 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G  A   L+ + +P+ + + +    + S ++ + R +       
Sbjct: 346 SVAPDGMDPCDLRLERGDAAVRDLVADRIPMFEFVIRSVISDFSIDSAEGRLQALRRAVP 405

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  I+D+ L+  Y++ +   +     + +           K  +        Q     +
Sbjct: 406 VVAQIRDEPLQREYARRLAGWVGWPDPEEVLHQVRQEARKPKKEQRPRFASLEQTSSAPA 465

Query: 471 LVKGKLSKKPSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-- 522
                +   P  RE         L   + +P I    +  + +  Y N   + +   +  
Sbjct: 466 QSNAPVMHIPGPREPHLWPQREALKLALQYPQIAGSYFDGITEDAYSNEAYRTIRRAIST 525

Query: 523 ---FSDFVEQKYFLP-EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
               +   EQ        +   + +      + +L                N     + Y
Sbjct: 526 LGGVTAGAEQPGVEWLAAVAGEMPDLMARNFVSELA-----VEPIKLGETGNPDTDLEAY 580

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             ++    +   +  Q  +++ Q+ ++    + E    L + L  +     ++
Sbjct: 581 ADSVLSRLQEARVGDQVAQLKAQLGRMRPSDDEESYNSLFADLVALEQARREL 633


>gi|54023437|ref|YP_117679.1| DNA primase [Nocardia farcinica IFM 10152]
 gi|54014945|dbj|BAD56315.1| putative DNA primase [Nocardia farcinica IFM 10152]
          Length = 635

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 136/642 (21%), Positives = 248/642 (38%), Gaps = 30/642 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +   + I +++G+YV   R             CPFHDEK+PSFH   + G 
Sbjct: 4   RLPDRDIAAIRDRVRIEDVVGEYVALKRAGA----DSMKGLCPFHDEKSPSFHVRPNHGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD   FL  +    F+E+V++LA   G  +         +     +  L+ 
Sbjct: 60  FHCFGCGEGGDVYKFLQKIEHIGFVEAVEQLADRVGYQINYEGGGTSVQRDRGTRARLVA 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A +F+   L     +    YL +R  D+ A  +F  GYAP    +L +HL +KGF 
Sbjct: 120 ANAAAHEFYMAQLAEPEAEAARKYLTDRDFDAAAARLFGCGYAPAGWDTLTKHLLRKGFE 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            +++  AGL           DRF  RL++PIR+  G+VI FG R L   +++  KY+N+P
Sbjct: 180 FKELEAAGLSRQ--GKRGPIDRFHRRLLWPIRNLGGEVIGFGARKLFDDDTMPGKYVNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K + L+    A   + K          S   ++VEGY DV+++  AGV+  V+S
Sbjct: 238 ETLLYKKSQVLFGLDHAKREIAK----------SRQAVVVEGYTDVMAMHLAGVKTAVAS 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN----RVNFVLL 353
            GTA  +  + +L +L                         +           +    + 
Sbjct: 288 CGTAFGDEHMAILRRLLMDDNFWRGEIIYTFDGDAAGQAAAIKAFSGDQKLAGQTYIAIA 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G+DP    +  G  A   L+    PL + + +        +T + + E        + 
Sbjct: 348 PDGQDPCELRQRSGDAAVRDLVARRTPLYEFVIRGLLAEHDLDTVEGQVEALRRAVPVVA 407

Query: 414 HIKDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
            IKD   R  Y+  +   +     Q  +       +  +     R        + +    
Sbjct: 408 QIKDNATRKAYATRLAGWVGWDDIQTVVRRVGEEAKRGRTGIAPRRAPAAPAEVAEHPAA 467

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           +   +    L +   L   + +PAI    +  L    + +     + + +          
Sbjct: 468 RPNPNDPVLLPQRQSLCAALQYPAIAGAVFDALEPEVFTHPAYAAIRTMIAEAGGASCGL 527

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              E    + +      L+ L  ++  A L       ++ D+ +     LA   +   + 
Sbjct: 528 SGAEWVNAVADATDDLTLRALVSELAGAQL----PVKSVNDIPRFITGVLA-RAQEAYVG 582

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           RQ   ++ ++ +++A  + ++   L   L  +      +E+Q
Sbjct: 583 RQIATLKSKLQRLSANEQTDEYLALFGDLVALEQYRKSLEAQ 624


>gi|291546783|emb|CBL19891.1| DNA primase [Ruminococcus sp. SR1/5]
          Length = 574

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 157/588 (26%), Positives = 259/588 (44%), Gaps = 35/588 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  D I+++ +   I ++I QYV   RR +      Y+  CPFH+EKTPSF    SK 
Sbjct: 1   MRYSDDIIEEVRMKNDIVDVISQYVKLTRRGS-----SYFGLCPFHNEKTPSFSVTPSKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+  +F+      SF E++  LA  AGV LP      +  +K + + +L+
Sbjct: 56  MYYCFGCGAGGNVYNFIMEYENYSFGEALSHLADRAGVELPKIEYSREAREKAEQRANLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A  +F++ L+    K  + YL  RG+    I  F LGY+      L ++L+ KG+
Sbjct: 116 EINKLAAQYFYYQLRREGGKTAYGYLTGRGLSEETIRKFGLGYSDKYSDDLYKYLKGKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S+E + E+GL          YD+F NR+IFPI     +VI FGGR +      KYLNSPE
Sbjct: 176 SDELLRESGLFNVD-ERRGMYDKFWNRVIFPIMDVNNRVIGFGGRVM-GDGKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K +NLY    A                 +++IL EGYMDV+++ QAG  N V+SL
Sbjct: 234 TKIFDKSRNLYGLNVAR------------TTRKNYLILCEGYMDVIAMHQAGFTNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     L+ + +  ++L +D D  G+RAA +AI +       G     V L   +D
Sbjct: 282 GTALTSGHASLVKRYTKEVLLLYDSDGAGIRAALRAIPI---LREAGVTSRVVSLKPWKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AFE+ +  ++           +  + + P  + +        +  + D+
Sbjct: 339 PDEFIKNEGAEAFEERLDRAMDSFMFRVHIAEQEFAMDAPQGQNQFFERCAGMLLELSDE 398

Query: 419 KLRYYYSQAI---RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
             R  Y +AI     R     +      +          +    K  +    +      K
Sbjct: 399 LERNLYIEAIVKEYGRYGVGTEDIRKRVNTLALKGTPAEKRIQPKSGTPETKKKESAADK 458

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   +  +L  L+N+P I ++  + ++   +     +++   LF    E +   P 
Sbjct: 459 -------AQKLMLTWLVNYPGIFEQVEKYISPSDFVVPLYKEVAQMLFEQHKEGET-NPG 510

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           ++     +      +  L               A    + +  +++L 
Sbjct: 511 KLLNAFTDSEEQREVASLFNATIHLENEGEQQRAFSDALLRIKEESLK 558


>gi|296394222|ref|YP_003659106.1| DNA primase [Segniliparus rotundus DSM 44985]
 gi|296181369|gb|ADG98275.1| DNA primase [Segniliparus rotundus DSM 44985]
          Length = 619

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 147/642 (22%), Positives = 258/642 (40%), Gaps = 44/642 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I+ +     I+ ++G YV                 CPFHDE+TPSF    S+GFY
Sbjct: 2   IAPADIEAIRERASIAEVVGDYVSLRPSG----HDRMVGLCPFHDERTPSFQVTPSRGFY 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
           +CF C   GD   FL  +   SF+++V+ LA      L   D  +++ +    +  LI  
Sbjct: 58  HCFGCGEGGDIYRFLQNIEHVSFVDAVEILADRIKYQLTRTDDSVDRAQDRGTKRRLISA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A +F+   L          +L  RG D    E F  G+AP     L  H+R KGF+E
Sbjct: 118 NQAAAEFYASRLMGEEAAPARDFLKGRGFDREISERFGCGFAPRGWDHLVRHMRAKGFAE 177

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
            ++ EAGL   G       DRFR RL++PIR++  +VI FG R + + +   KYLN+PET
Sbjct: 178 SELEEAGLARKGQRGM--VDRFRGRLLWPIRNASREVIGFGARRIFEDDDGPKYLNTPET 235

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            L+ K   L+    A   +           +   +++VEGY DV+++  AGV   V+S G
Sbjct: 236 KLYKKSHVLFGLDQAKREIA----------TKHQVVVVEGYTDVMAMHAAGVPTAVASCG 285

Query: 300 TALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           TA     + ++             ++  FDGD+ G  AA KA +     +    R    L
Sbjct: 286 TAFGADHIAVIRRLLLDDEHSRGEVIYTFDGDEAGKAAALKAWEGDQSLVA---RTFVAL 342

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           +  G DP       G  A   L+ + +PL++   +           + R          +
Sbjct: 343 MPAGLDPCDTRLQQGDDALRGLVAQRVPLLEFATRAALAEFDLANAEGRVGALRRTVPMV 402

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             IKD  LR  Y++ +   +       +              R      PS+R       
Sbjct: 403 AKIKDVALRDEYARQLAGWVGWDDTAQVLSRVREEAGEAPARRAGGAPAPSRR------- 455

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           +   ++  S RE+  L  L+ HP ++ EQ+  ++   +   + + +              
Sbjct: 456 RPSSTRDWSQRES--LKALLQHPKLIAEQFAGVSPEVFAREDYRAIRDAALRAMDAAAGL 513

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             +   Q + ++   E L++L  ++    + ++ ++         Y  A+        + 
Sbjct: 514 EGQSWVQAVRDQADDERLQKLVAELAVEPIATSQSQMAK------YVGAVLARLELFDIE 567

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            Q  E++ ++++     +  +   +   L  +      ++ Q
Sbjct: 568 DQIAELKSELSRNEGSADGGRITEVFGELVALESFRRALQKQ 609


>gi|323490071|ref|ZP_08095292.1| DNA primase [Planococcus donghaensis MPA1U2]
 gi|323396367|gb|EGA89192.1| DNA primase [Planococcus donghaensis MPA1U2]
          Length = 599

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 150/632 (23%), Positives = 287/632 (45%), Gaps = 41/632 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+ +     I +++G+YV   +R  N     ++  CPFH E TPSF     K  
Sbjct: 4   RVPEEVIEKIRSSTDIVDVVGEYVQLTKRGRN-----WFGLCPFHGESTPSFSVTADKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIR 119
           ++CF C   G+ ++FL  +   +F +++ RL + AG+ + +  P      + K    LI 
Sbjct: 59  FHCFGCGAGGNVITFLMDIENLTFQDALSRLGSRAGIDVDIQAPADSGPVQSKEDQQLIL 118

Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + E A D +HH  L     +    YL+ RG     IE  ++G++      +   L++KGF
Sbjct: 119 MHEFAADMYHHILLNTEEGQEALDYLENRGFTREIIEKNRIGWSLPEWNYMASSLKRKGF 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
           SEE++  +GL I  + S+  +DRFR R++FPI +  G+VIAF GR L   +   KY+NSP
Sbjct: 179 SEEELETSGLAIAREQSSGYFDRFRGRIMFPIMNETGKVIAFSGRVLEHTKQEAKYMNSP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ +F K + LYN   A + ++K+ +          IIL EG+MDV++  +AGV N +++
Sbjct: 239 ESPIFQKSQVLYNVHHARSAIRKNRK----------IILFEGFMDVIAAGKAGVDNALAT 288

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT+LT   +R + + +  +V+CFDGDD G  AA +A    +       +V   +L    
Sbjct: 289 MGTSLTAQHIRQMKRFAQEVVICFDGDDAGWEAAKRAA---ISLNEENFKVEVAVLPGKM 345

Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD ++R  G  AF+  +I +    +         +++F   ++  +    +   +    
Sbjct: 346 DPDDYVRDNGAEAFKDQIIGKPHAFLAFAMMHARRHKNFQYENDLLQYIQEVLQLLAGRS 405

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               R  Y + +        +  +++ +    Y K   +  ++  P   ++++   + K 
Sbjct: 406 SPLERDLYIKQLS------VETGLSQEAILQHYRKLENKTIERNRPEPAIIKTPKKEPKR 459

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL   +  P+++ +   E   I + + E Q L+  L   + E       +
Sbjct: 460 ITSLHRAERMLLSHALADPSVMNKLVVEDNGIPFVSEEFQALYVQLLGFYEEWDKADFHK 519

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             + L +    +L+           + +A +E +     +     L  + +   + +Q  
Sbjct: 520 FLETLQDAELRKLV-----------METALSERDPEHADEEIADCLK-HLQKHRIEQQIN 567

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
              +Q  +   + + ++  +L   +  +   +
Sbjct: 568 LKIQQSKEAEKQHDLKRALLLAQEVIALRKSL 599


>gi|222053801|ref|YP_002536163.1| DNA primase [Geobacter sp. FRC-32]
 gi|221563090|gb|ACM19062.1| DNA primase [Geobacter sp. FRC-32]
          Length = 589

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 150/635 (23%), Positives = 276/635 (43%), Gaps = 51/635 (8%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M+  P D I ++     I  ++  YV   +   N     Y   CPFH EKT SF+ N ++
Sbjct: 1   MSMIPDDKINEVRERASILEIVSDYVSLRKSGAN-----YQGICPFHGEKTGSFNVNPAR 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDL 117
           G ++CF C V G+ +SF+  + G SF E+V+ LA   GV +         +++   +  L
Sbjct: 56  GIFHCFGCGVGGNAISFIMKIEGLSFPEAVKFLAKRVGVTIEERPRTATEKRQSDERELL 115

Query: 118 IRLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            ++   A  F+    L +   +    YL+ RG+DS   E + +GYAPD   SL  HL Q 
Sbjct: 116 YKINGQAAAFYRQLLLNDPAGEAGRQYLERRGVDSATSEAYGIGYAPDKWDSLTRHLEQL 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
               +   + GL I        YD FRNRL+F I    G+ I FGGR L      KY+NS
Sbjct: 176 RVPLDLAEKLGL-IKRREGGRHYDAFRNRLLFVIADMHGRPIGFGGRVL-DDSLPKYINS 233

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ ++HK + L+    +   +++              I+VEGY D L+L QAG++NVV+
Sbjct: 234 PESPIYHKSEVLFGLNLSKYAMREKGNG----------IIVEGYFDHLALYQAGIRNVVA 283

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           + GTALT   ++LL + + ++   FDGD  G +A  ++++L L         + + L  G
Sbjct: 284 TCGTALTTGHIKLLQRYANKVYTLFDGDSAGRKATLRSMELFLDEK---LPASVIELPPG 340

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPD+F++  G  AF   + ++ P+ +  +          T + +      L   +  I 
Sbjct: 341 DDPDTFLKTQGDGAFAGHLAKAKPIFEFFFSELLGQYDSGTVEGKVGTIEALTPHLMKIV 400

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +   R  Y + I  +L    ++   +           A  R++  P              
Sbjct: 401 NPIERDLYIKEISRKLGVDPRQMQKKIGRSPVSSADLAVPRERVKPRSNKGP-------- 452

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  L+  +  +  +++      A   +   +L  +   + +    +       
Sbjct: 453 -------EETLISLMGKYAGVIKRVRDYGAANLFS-ADLLPIAEAIMAHNDSEAGIDWAL 504

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + +++            + + R AG++      + +D  + + Q      R  L     +
Sbjct: 505 LLEQIDST---------EERSRLAGIFMDDDHLDEIDANKAFDQCRMSRDRSMLKDGDVK 555

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           E++K+++++ +  ++E+   ++  L  +  +  Q+
Sbjct: 556 ELKKELSRLDS--DSERYWEILRKLDTLRNKKSQL 588


>gi|260599323|ref|YP_003211894.1| DNA primase [Cronobacter turicensis z3032]
 gi|260218500|emb|CBA33677.1| DNA primase [Cronobacter turicensis z3032]
          Length = 592

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 175/628 (27%), Positives = 292/628 (46%), Gaps = 53/628 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 15  RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 69

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L  
Sbjct: 70  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPTQIERHQRQTLYE 129

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  +L+    +   +YL +RG+    IE F +GYAP    +  +       +
Sbjct: 130 LLDGLNGFYRQALQAQSGEPARHYLAKRGLSDSVIERFAIGYAPPGWDNALKRFGNNSEN 189

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  +++  SYDRFR R++FPIR  RG+VI FGGR L      KYLNSPET
Sbjct: 190 RKSLIDAGMLV-TNDNGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 247

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  +                 +   +++VEGYMDV++L Q  +   V+SLG
Sbjct: 248 DIFHKGRQLYGLYEVQQS----------DPNPPRLLVVEGYMDVVALSQYDINYAVASLG 297

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T   +++L++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 298 TATTAEHIQMLFRATNTVICCYDGDRAGRSAAWRALETALPYMTDGRQLRFMFLPDGEDP 357

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         +TPD RA+L       I+ +  + 
Sbjct: 358 DTLVRQEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSTPDGRAQLSTLALPLISQVPGET 417

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +                  Q  P+  L ++++        
Sbjct: 418 LRIYLRQELGNKLGILDDSQLERL-------MTRQADNSQTRPAPTLKRTTM-------- 462

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +       LA +        +L++ L +  + Q      ++ +
Sbjct: 463 -----RILIGLLVQNPELAPLVP-SLAALDKTKLPGLELFTELVNTCLSQPGLTTGQLLE 516

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                     L++L         W    + +I    + +  AL  +    +L  +  E+ 
Sbjct: 517 HYRGTKEAATLEKLST-------WDDIADKDI--AEKTFTDALD-HMFDSVLELRLTEL- 565

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627
             IA+   +G        + I+ E   +
Sbjct: 566 --IARSRTQGLNAAEREEVRIITEARAK 591


>gi|227548806|ref|ZP_03978855.1| DNA primase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079136|gb|EEI17099.1| DNA primase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 631

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 135/651 (20%), Positives = 263/651 (40%), Gaps = 50/651 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +    PI  ++G+YV                  PF DEKTPSFH   ++G+
Sbjct: 5   RIPDSDIQAIRERAPIDEIVGEYVQLKPAG----HDSLKGLSPFKDEKTPSFHVRPARGY 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118
           Y+CFS    GD  SFL  +   +F E+V+ +A   G  +         ++     +  L+
Sbjct: 61  YHCFSTGKGGDVFSFLMEMEQLTFPEAVEAVAEQIGYHINYRGGSTGARDVKPGTRARLL 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              + A +F+   L+    +    +L +RG D   I  F+ GYAPD   +L +HL +KGF
Sbjct: 121 AANKAAHEFYRKQLEKPEAEVGRQFLLDRGFDQDTIYHFECGYAPDGWDTLTKHLLRKGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
             +++ +AGL           D+FR RL++PI+   G VI FG R L   + + KY+N+ 
Sbjct: 181 DVQELQDAGL--STMGRRGPIDKFRRRLLWPIKDVAGNVIGFGARKLFDDDPMGKYMNTS 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T+L+HK K L+    A   +           +    ++VEGY DV+++  AGV   V++
Sbjct: 239 DTMLYHKSKVLFGLDLAKKSIA----------TEHQAVVVEGYTDVMAMHAAGVTTAVAA 288

Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA  +  + ++             ++  FDGD+ G +AA +A +          +   
Sbjct: 289 CGTAFGKDHMSIIRRLMLDDNYFRGELIYTFDGDEAGQKAAMRAFEGDQAFTG---QSFV 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G +A   L+   +P+ + +     +N S +T + R +       
Sbjct: 346 AVAPEGMDPCDLRLGKGDSAVRDLVASRVPMYEFVLGTLLQNYSLDTAEGRLQALRRTVP 405

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQ----KYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            +  I D  L+  Y++ +   +           + + +   +  K++   R Q       
Sbjct: 406 VVAEISDPVLQTEYARRLAGWVGWPNPGEVISQVRDEAKKPKKSKRSFSPRAQATQPTNT 465

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
               LV           +   L   + +P +  + +  +    + N   +++   +    
Sbjct: 466 DAPLLVAPAPDDSLLWPQREALKIALQYPDVAGDYFDGINPDAFTNGAYRQVRDAM---- 521

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV----RQGYQQAL 582
                     +   +      E + ++  Q+RD    +  +E  + ++     + Y  ++
Sbjct: 522 --------GAVGSVIAVSSGVEWISEVAGQMRDLAGRNFVSELAVEEIHADDIEAYADSV 573

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
               +   +  Q  +++ Q+ ++    +      L S L  +     ++ +
Sbjct: 574 FSRLQEARVGDQIAQLKAQLERMRPADDERAYNALFSDLLALETARRELNN 624


>gi|294634614|ref|ZP_06713148.1| DNA primase [Edwardsiella tarda ATCC 23685]
 gi|291091944|gb|EFE24505.1| DNA primase [Edwardsiella tarda ATCC 23685]
          Length = 582

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 178/626 (28%), Positives = 289/626 (46%), Gaps = 57/626 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I  LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVELIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNADKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA +AG+ +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATMAGLEVPYESGNGPSQMERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E    ++  +L+     +   YL  RG+    ++ F +GYAP    +  +   ++   
Sbjct: 119 LMEGLCSYYQQALRQPGATQAQSYLAGRGMSQAIMDRFAIGYAPPGWDNALKRFGREAAG 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  +++  SYDRFR+R++ PIR  RG+VIAFGGR L  G + KYLNSPET
Sbjct: 179 RLALNDAGMLV-NNDNGRSYDRFRDRIMIPIRDKRGRVIAFGGRVLGNG-TPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ L+  + AL +  +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLFGLYEALQHAPQPAR----------LLVVEGYMDVIALAQYGINYTVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  +V C+DGD+ G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRHTDSVVCCYDGDNAGREAAWRALETALPYLSDGRQLKFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  G  AFE+ +  + PL   L+         +TPD RA+L       I  +  + 
Sbjct: 347 DTLVRKEGTDAFEQRMNAAHPLSTFLFDTLLPQVDLSTPDGRAKLSALALPLIGQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  QA+  +L  L    + +         KN +    K  +                
Sbjct: 407 LRLYLRQALGQKLGILDDSQLEKLLPQRNPAVKNYQPPRLKPTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +PA+  E    + L            L+  L    + Q      ++
Sbjct: 452 -----RILIALLVQNPALASEVPTLEGLRQHALPGLP---LFIELVETCLAQPGLSTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +   +  +   L+ L        +     E  +  +   Y   L             + 
Sbjct: 504 LELYRDNKYAPQLETLATW-NHMIIEPMVLETFVDTLGSLYDAVLE------------QR 550

Query: 598 IEKQIAQVTAKGEAEKTAILISILHE 623
           +E  IA+   +G        +  L+E
Sbjct: 551 LEHLIARARTEGLTPAEREEVRSLNE 576


>gi|300858931|ref|YP_003783914.1| DNA primase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686385|gb|ADK29307.1| DNA primase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206631|gb|ADL10973.1| DNA primase [Corynebacterium pseudotuberculosis C231]
          Length = 638

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/648 (20%), Positives = 249/648 (38%), Gaps = 38/648 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +    PI  ++G+YV                  PF +EKTPSFH   + G+
Sbjct: 5   RIPDSDIQAIRERTPIEEIVGEYVQLKPAGA----DSLKGLSPFKEEKTPSFHVRPNHGY 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118
           ++CFS    GD  SFL  +   +F E+V+  A      +         + +    +  LI
Sbjct: 61  FHCFSTGKGGDVFSFLMEMEHLTFPEAVEACAEKIHYQINYQGGTTGARREEPGTRRRLI 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              + A  F+   L+         +L +RG     I  F+ GYAP+    L ++L +KGF
Sbjct: 121 EANKTAHAFYREQLETPEAATARQFLLDRGFSQQHIYAFECGYAPEGWDVLTKYLLRKGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
             +++  AGL           DRF  RL++PI+S  G VI FG R L   +   KY+N+P
Sbjct: 181 DFKELEAAGL--STMGRRGPIDRFHRRLLWPIKSVSGDVIGFGARKLFDDDKLGKYMNTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K K L+    A   +            +   ++VEGY DV+++  AG+   V++
Sbjct: 239 ETLLYKKSKVLFGLDNAKKDIA----------QNHQAVVVEGYTDVMAMHAAGITTAVAA 288

Query: 298 LGTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA  E  L++L +           ++  FDGD+ G +AA +A +          +   
Sbjct: 289 CGTAFGEEHLQILRRYMLDDSYFSGSLIYTFDGDEAGQKAAMRAFEGDQKFTG---QSYV 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G  A   L+ + +P+ + + +      S ++ + R +       
Sbjct: 346 AVAPEGMDPCDLRLSKGDAAVRDLVAQRVPMFEFIIRTLIAGYSLDSVEGRLQALRRAVP 405

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD-------QKGPS 463
            +  IKD+ L+  Y++ +   +       + +         +NA               S
Sbjct: 406 IVADIKDRALKTEYARLLSGWVGWPDPNEVIQQVRVAERRPRNAPKAKRATRFDANSNSS 465

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           + +  + +V           +   L   + +P +    + +L D  + N     L   + 
Sbjct: 466 EGIATALMVLPDRKDPRLWPQREALKLALQYPHVAGRYFDDLPDDAFSNETYAALNVAIA 525

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                            + +     + K L  ++    +   T +     + +   + L 
Sbjct: 526 QAGGCANADGGAAWLAAVSDCVHDLVGKSLVSELAVEPVHIETEDEVENGLLKHIDKTL- 584

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
              + + +  Q   ++ ++ ++    +      + + L  +     ++
Sbjct: 585 SRLQEQRVGNQIALLKGKLQRMRPSDDEVAYNSMFADLVALEQSRREL 632


>gi|302331180|gb|ADL21374.1| DNA primase [Corynebacterium pseudotuberculosis 1002]
 gi|308276874|gb|ADO26773.1| DNA primase [Corynebacterium pseudotuberculosis I19]
          Length = 640

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/648 (20%), Positives = 249/648 (38%), Gaps = 38/648 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +    PI  ++G+YV                  PF +EKTPSFH   + G+
Sbjct: 7   RIPDSDIQAIRERTPIEEIVGEYVQLKPAGA----DSLKGLSPFKEEKTPSFHVRPNHGY 62

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118
           ++CFS    GD  SFL  +   +F E+V+  A      +         + +    +  LI
Sbjct: 63  FHCFSTGKGGDVFSFLMEMEHLTFPEAVEACAEKIHYQINYQGGTTGARREEPGTRRRLI 122

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              + A  F+   L+         +L +RG     I  F+ GYAP+    L ++L +KGF
Sbjct: 123 EANKTAHAFYREQLETPEAATARQFLLDRGFSQQHIYAFECGYAPEGWDVLTKYLLRKGF 182

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
             +++  AGL           DRF  RL++PI+S  G VI FG R L   +   KY+N+P
Sbjct: 183 DFKELEAAGL--STMGRRGPIDRFHRRLLWPIKSVSGDVIGFGARKLFDDDKLGKYMNTP 240

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K K L+    A   +            +   ++VEGY DV+++  AG+   V++
Sbjct: 241 ETLLYKKSKVLFGLDNAKKDIA----------QNHQAVVVEGYTDVMAMHAAGITTAVAA 290

Query: 298 LGTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA  E  L++L +           ++  FDGD+ G +AA +A +          +   
Sbjct: 291 CGTAFGEEHLQILRRYMLDDSYFSGSLIYTFDGDEAGQKAAMRAFEGDQKFTG---QSYV 347

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G  A   L+ + +P+ + + +      S ++ + R +       
Sbjct: 348 AVAPEGMDPCDLRLSKGDAAVRDLVAQRVPMFEFIIRTLIAGYSLDSVEGRLQALRRAVP 407

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD-------QKGPS 463
            +  IKD+ L+  Y++ +   +       + +         +NA               S
Sbjct: 408 IVADIKDRALKTEYARLLSGWVGWPDPNEVIQQVRVAERRPRNAPKAKRATRFDANSNSS 467

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           + +  + +V           +   L   + +P +    + +L D  + N     L   + 
Sbjct: 468 EGIATALMVLPDRKDPRLWPQREALKLALQYPHVAGRYFDDLPDDAFSNETYAALNVAIA 527

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                            + +     + K L  ++    +   T +     + +   + L 
Sbjct: 528 QAGGCANADGGAAWLAAVSDCVHDLVGKSLVSELAVEPVHIETEDEVENGLLKHIDKTL- 586

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
              + + +  Q   ++ ++ ++    +      + + L  +     ++
Sbjct: 587 SRLQEQRVGNQIALLKGKLQRMRPSDDEVAYNSMFADLVALEQSRREL 634


>gi|295092058|emb|CBK78165.1| DNA primase [Clostridium cf. saccharolyticum K10]
          Length = 598

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/636 (24%), Positives = 268/636 (42%), Gaps = 45/636 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP + I+++     I ++I  YV   ++ +N     Y+  CPFH EK+PSF  + SK 
Sbjct: 1   MYYPEEVIEEVRTRSDIVDIISGYVKLQKKGSN-----YFGLCPFHHEKSPSFSVSQSKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            Y+CF C V G+  +F+      SF E+V+ LA  +GV LP      +   +  ++  L+
Sbjct: 56  MYHCFGCGVSGNVFTFVMEYENYSFREAVELLAERSGVKLPKVEYSREARAQADLRAALL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A ++F++ LK  + +  + YL  R +    I  F LG+A  +   L   L+ KG+
Sbjct: 116 EINKLAANYFYYQLKQPQGEAGYRYLTGRELTDQTIRHFGLGFANKTSDDLYRFLKSKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            +  + E GL+        S D+F NR++FPI     +VI FGGR +      KYLNSPE
Sbjct: 176 DDSLLKETGLVTI--EERGSRDKFWNRVMFPIMDVNNRVIGFGGRVM-GDGEPKYLNSPE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF K +NLY    A              +   +++L EGYMDV+++ QAG  N V+SL
Sbjct: 233 TKLFDKSRNLYGLNFAR------------LSREKYMLLCEGYMDVIAMHQAGFTNAVASL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T     LL + + +++L +D D  G++AA +AI +       G  V  + +   +D
Sbjct: 281 GTAFTAQHAALLKRYTDQVILTYDSDGAGVKAALRAIPI---LKAVGMSVKVLNMKPCKD 337

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AF + I E+            +  S   P+++          +    + 
Sbjct: 338 PDEFIKSLGADAFRQRISEARNSFLFEIDTIRQKYSMEDPEQKTAFYNETARKLLEFSEA 397

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS-----QRLMQSSLVK 473
             R  Y QA+       ++      +  G  +                   +  +    K
Sbjct: 398 LERDNYIQAVSREYFISYEDLKRLVNSLGSRYGSALPGTRADREGVGETYAQKPREIQKK 457

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
               +     E  LL  LI  P + ++    +    +     ++    +F  + + +   
Sbjct: 458 RDREEGIRQSERLLLTWLIEEPRLFEKIRGIIGPEDFVKPLYRRAAEMVFEGYEKGEVNP 517

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              ++  + + G    +  L     +  L +   +    D                +L  
Sbjct: 518 AAILNHFIDDEGNYREVAALFNASLNDSLSNEEQKKAFAD---------------TVLKV 562

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +K  ++ Q    +   E ++     + L  +HI + 
Sbjct: 563 KKSSLDYQSRNASDLNELQRIIKEQAELANLHISLE 598


>gi|302670284|ref|YP_003830244.1| DNA primase DnaG [Butyrivibrio proteoclasticus B316]
 gi|302394757|gb|ADL33662.1| DNA primase DnaG [Butyrivibrio proteoclasticus B316]
          Length = 592

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 154/601 (25%), Positives = 274/601 (45%), Gaps = 40/601 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I+++     I +++GQYV   ++  N     Y+  CPFH+EK+ SF  +  K 
Sbjct: 1   MRYSDEIIEEVRSRNDIVDVVGQYVHLQKKGAN-----YFGLCPFHNEKSGSFSVSGHKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLI 118
            YYCF C   G+ ++FL      +F E+V++LA  AG+ LP  D  P  +     +  L+
Sbjct: 56  MYYCFGCGAGGNVITFLMKYDNLTFTEAVKQLADRAGIKLPDEDDSPAAKAMRDKRQILL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + + A  ++++ L+    ++   Y   R +    ++ F LGY+  +   L +HL+  G+
Sbjct: 116 DINKEAAKYYYYQLRGRNGQKGMEYFRGRKLTDETMQHFGLGYSNITSDDLVKHLKSLGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            + +II+AGL    D    ++D+F NR++FPI+ +  +VI FGGR L      KYLNSPE
Sbjct: 176 EDSQIIDAGLA-SYDEKYGTHDKFWNRVMFPIQDASQKVIGFGGRVL-GDGKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K +NL+    A N              + ++I+ EGYMDV+++ QAG    V+SL
Sbjct: 234 TLIFDKSRNLFGLNYAKNS------------RAGYMIICEGYMDVIAMHQAGFTMAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T  Q  +L + +  ++L +D D+ G +AA + I +       G +   + L   +D
Sbjct: 282 GTAFTTGQAMILKRYTDEVILSYDSDEAGTKAALRGIGI---LKEAGLKGKVLDLRPHKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  GK AFE+ I  +        +    +R+   P+++ E    +   +   ++ 
Sbjct: 339 PDEFIKNEGKEAFEERIRNAESTFFFEVRVMESHRNLADPEDKTEFYRDIARKLCEFEEP 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y++A+  R            + Y               P++R       K K   
Sbjct: 399 LERENYTEAVAARYNIAIADLKGLVASYAGRA-------GMVTPARRPESGIQSKKKPED 451

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LL  L + P I  +    +    + ++  +K+ + +F+       F P  I 
Sbjct: 452 GARKNQRLLLTWLTDEPDIYPKVAAWVTPDDFSDDLYRKVATEVFTGMANGN-FSPAAIL 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               E      + ++          +   +    D R+   + + L  +     RQK+E+
Sbjct: 511 DHFTEEEQYGQVAEMFN--------TNLVDIETKDQRRKAFRDIILGVKQAGYDRQKKEL 562

Query: 599 E 599
           +
Sbjct: 563 K 563


>gi|114321664|ref|YP_743347.1| DNA primase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228058|gb|ABI57857.1| DNA primase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 617

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 170/634 (26%), Positives = 271/634 (42%), Gaps = 46/634 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P +FI +LL    I+ ++G  V   +   N +       CPFH EKTPSF    +K F
Sbjct: 4   RIPDEFIDELLHRTDITEVVGARVRLKKTGANLL-----GLCPFHSEKTPSFTVAPAKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   G  + FL       F E+V+ LA  AG+ LP               L  ++
Sbjct: 59  YHCFGCGAHGTAIRFLMDYERMDFREAVEYLARQAGMELPAAAAAAPVP-DRHARLYHVL 117

Query: 122 EVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             A  ++  +L ++    +   YL  RG+       F LG+AP    +L +  R +    
Sbjct: 118 AEAAIYYQEALRRHPASAKAVDYLKRRGLSGDIAARFALGFAPPGWDNLLKRHRDRQA-- 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             ++EAGLLI+ D     YDRFR+R++FPIR+ RG V+ FGGR L      KYLNSPET 
Sbjct: 176 -DLVEAGLLIERDGG-RVYDRFRDRVMFPIRNRRGTVVGFGGRVL-GDGEPKYLNSPETP 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG+ LY  + A+   +              +++VEGYMDV++L Q GVQ  V++LGT
Sbjct: 233 VFHKGRELYGLYEAVQAQRNPPL----------LLVVEGYMDVVALAQHGVQGAVATLGT 282

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+T  Q+  L++ + R+V CFDGD  G +AA++A++  L  +  G  V  +LL  GEDPD
Sbjct: 283 AVTPDQVSRLFRATDRVVFCFDGDRAGRQAAWRAVENSLPAMREGRSVEILLLPEGEDPD 342

Query: 361 SFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           S +R  G  AF  +L  E+ PL +   +   +    +  D+RA L       +  +    
Sbjct: 343 SLVRAEGAEAFLRRLERETRPLAEYSLEELADGLRLDAVDDRARLVQKAVPLVRRLPVGI 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R +Y + + +       +        G   +  A  R                 + +  
Sbjct: 403 YRDFYVEKLAELAHTGVGRIEQAVEQGGEGARPTAPERPPAARRPAGGGRGAAMVRRTPV 462

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                   L  L+  PA++      L  +  D   L  L   +     +        + Q
Sbjct: 463 -----RQALTLLLQRPALVA-HAGPLDQLHGDLPGLDLLRQ-ILEIARDHPDVNTAGLLQ 515

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           R         L +L              E    D+   +   L   ++    SRQ  E+ 
Sbjct: 516 RFQGHPQEAALWRLATW-----------ELPGGDLEGEFTDCLERIRQACS-SRQTSELR 563

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            ++ +   + + +     +  L +   ++  +  
Sbjct: 564 AELDE---ERDFDAAKDKLRTLMQ-RRRLQYLRE 593


>gi|153816194|ref|ZP_01968862.1| hypothetical protein RUMTOR_02442 [Ruminococcus torques ATCC 27756]
 gi|317500514|ref|ZP_07958737.1| DNA primase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089387|ref|ZP_08338286.1| hypothetical protein HMPREF1025_01869 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846529|gb|EDK23447.1| hypothetical protein RUMTOR_02442 [Ruminococcus torques ATCC 27756]
 gi|316898103|gb|EFV20151.1| DNA primase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404755|gb|EGG84293.1| hypothetical protein HMPREF1025_01869 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 591

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/641 (24%), Positives = 266/641 (41%), Gaps = 52/641 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP + I+++     I ++I  YV   ++ +      Y+  CPFH+EK+PSF  +  K 
Sbjct: 1   MYYPDELIEEVRTRNDIVDVISDYVRLQKKGS-----SYFGLCPFHNEKSPSFSVSRQKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+  +FL      SF+E+V+ LA  AG+ LP      + +++  ++  ++
Sbjct: 56  MYYCFGCGAGGNVFTFLMEYENFSFMEAVKFLADRAGIALPEAEYSKEAKQRADLKASIL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A  +++  LK+ R    H YL +RG+    I  F LGY+      L ++LR KG+
Sbjct: 116 EINKIAARYYYVQLKSERGVGAHTYLTDRGLTEETITAFGLGYSTKYSDDLYQYLRGKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           SE+ I +AGL I+ D     YD+F NR+IFPI     +VI FGGR +      KYLNSPE
Sbjct: 176 SEDLIRQAGL-INTDERQGVYDKFWNRVIFPIMDVNSRVIGFGGRVM-GDGKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K +NLY    A              +  ++ +L EGYMDV+SL QAG  N V+SL
Sbjct: 234 TAVFDKSRNLYGLNRAR------------TSRKTYFLLCEGYMDVISLHQAGFTNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     L+ +    + L +D DD G RAA +A+ +       G     + +   +D
Sbjct: 282 GTALTSGHASLIKRYVQEVYLTYDSDDAGTRAALRAVPI---LKEAGISAKVIRMDPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G   FE  I  +        +         +P+ +        N +   +D+
Sbjct: 339 PDEFIKNLGAQEFENRIQNARNGFMFSLEILEREFDMASPEGKTAFFREAANRLLSFEDE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+    +   +      +       K A       P  R  ++     +   
Sbjct: 399 LERNNYIEAVASAYKVSKESLEKLVA-------KTAVSTGLARPVTRPKKADGAVLQKED 451

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LL  +I +  +  +    ++   +     +++   L+    E+    P ++ 
Sbjct: 452 GIVTSQKVLLTWMIENENLYSKISSYISPDDFTGELNRRVAKLLYEQ-HEKGELNPAKLL 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                         L                   +  Q  +  + L  +   ++ +    
Sbjct: 511 NHFTSEEEHREAASLFHTKIRQL-------KTKEEQDQALKDTI-LKVKAHSINER---- 558

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                              +  L E   ++ ++      I+
Sbjct: 559 --------TLNLDPSDMAGLQHLMEEKRKLEELRQLHISID 591


>gi|284030450|ref|YP_003380381.1| DNA primase [Kribbella flavida DSM 17836]
 gi|283809743|gb|ADB31582.1| DNA primase [Kribbella flavida DSM 17836]
          Length = 634

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 150/650 (23%), Positives = 259/650 (39%), Gaps = 42/650 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I  ++G YV           G     CPFHDEK+PSF+   ++GF
Sbjct: 4   RIKEEDIALVRERARIDEVVGSYVTLKNAG----GGSLKGLCPFHDEKSPSFNVTPARGF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---EKKEKIQTDLI 118
           +YCF C   GD + F+  +   SF E+V+ LAA  G+ L   +      + +   +  L+
Sbjct: 60  FYCFGCQEGGDVIDFIQKIDQISFHEAVETLAAKTGIQLRYDESGAPMPKSQSNQRPRLV 119

Query: 119 RLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
               VA +F+   L           +LD+RG D  A   F +G++P     L  HLR +G
Sbjct: 120 EAHRVAAEFYSELLFGAPEATLGRQFLDKRGFDRDAAAHFGVGFSPRGGDQLVTHLRGRG 179

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235
           FS  +++ +GL+  GDN    YDRFR RL++PIR +   VI FG R L   + +  KYLN
Sbjct: 180 FSNAEMVASGLV--GDNQRGLYDRFRGRLMWPIRDAASDVIGFGARRLFDDDKIEAKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +PET+++ K K LY    A   + K              ++VEGY DV++   AGVQ  V
Sbjct: 238 TPETVIYKKSKVLYGVDLARREIAK----------GKQAVVVEGYTDVMACHLAGVQTAV 287

Query: 296 SSLGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           ++ GT+  E   R+L        +    ++  FDGD+ G RAA KA +         ++ 
Sbjct: 288 ATCGTSFGEDHARVLRQLLLDHDQFRGEVIFTFDGDEAGQRAAVKAFEGDQAFA---SQT 344

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
              +   G DP       G  A  +LI   +PL   +          +  D R +     
Sbjct: 345 YVAVEPDGLDPCDLRLQKGDAAVRELIGRRVPLYRFVLTNRLAKYDLDRADTRIDALRDA 404

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              +  I+D+     +++ +   L     +   E                 +GP     +
Sbjct: 405 ATLVVSIRDRSKVDAFTRELAGLLGMEVDQVRNEVHRAASRPAPTKSAPADRGPVVVQTE 464

Query: 469 SSLVKGKLSKKPS----LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
           +          P     L E  +L   + +PA++   + EL D  + +  L  + S +  
Sbjct: 465 APPPPKVNLPSPRDPRFLMEWDVLKLAMQYPALVGVAFDELDDHDFTHPWLAAVRSAMAK 524

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                +    E     + +    +    +   +    L          +  + + +A   
Sbjct: 525 VGGPAQAAPGEAWVVAVRDAMGNDPAAAVVSALAVEPLRIGR------EPDERFARAHLA 578

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             +     R+  +++ ++ +     +A+    +   L  +     ++  Q
Sbjct: 579 RLQELTCLRRIADLKSKLQRTNPIDKADDYNRMFGELIALEQYRTELREQ 628


>gi|206576100|ref|YP_002236519.1| DNA primase [Klebsiella pneumoniae 342]
 gi|288933504|ref|YP_003437563.1| DNA primase [Klebsiella variicola At-22]
 gi|290511437|ref|ZP_06550806.1| DNA primase [Klebsiella sp. 1_1_55]
 gi|206565158|gb|ACI06934.1| DNA primase [Klebsiella pneumoniae 342]
 gi|288888233|gb|ADC56551.1| DNA primase [Klebsiella variicola At-22]
 gi|289776430|gb|EFD84429.1| DNA primase [Klebsiella sp. 1_1_55]
          Length = 581

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/629 (28%), Positives = 297/629 (47%), Gaps = 54/629 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFISDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P    +   + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPYEAGNGPSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL          YL +RG+ S  I  F +GYAP    ++ +       +
Sbjct: 119 LLDGLNAFYQQSLMQPAADPARQYLAKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L      KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNPEPPR----------LLVVEGYMDVVALAQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++++  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         +TPD RA+L       I  +  + 
Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSTPDGRAQLSTLALPLITQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +                     P+ +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDAQLERL-------MPKQSENGAPRPAPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +                 L  L+S L    + Q      ++ +
Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLEGLDSRKMPGL-SLFSELVKSCLAQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           +         L++L        +W    + +I    + +  +L  +    LL  ++EE+ 
Sbjct: 506 QYRGTKEAATLEKL-------SMWDDIADKDI--AEKTFTDSLN-HMFDSLLELRQEEL- 554

Query: 600 KQIAQVTAKG-EAEKTAILISILHEVHIQ 627
             IA+    G  +E+   L +I  E+  +
Sbjct: 555 --IARDRTHGLSSEERRELWTISQELAKK 581


>gi|209696104|ref|YP_002264034.1| DNA primase [Aliivibrio salmonicida LFI1238]
 gi|208010057|emb|CAQ80380.1| DNA primase [Aliivibrio salmonicida LFI1238]
          Length = 586

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/631 (26%), Positives = 289/631 (45%), Gaps = 56/631 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI +LL    I ++I   V   ++  N     Y ACCPFH+EK+PSF  +  K FY
Sbjct: 5   IPRSFIDELLNRHDIVDIIDTRVKLKKQGKN-----YGACCPFHNEKSPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-------EKKEKIQT 115
           +CF C V G+ + FL       F+E+++ LA++ G+ +P                 + + 
Sbjct: 60  HCFGCGVHGNAIDFLMEFDRLEFVEAIEELASMLGLDVPREQRSGFSAPSGPTANSEQKR 119

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L  L+   + F+   LK+A +     YL ERG+ S   + F +GY  D    ++ +  +
Sbjct: 120 SLYDLMGGISQFYRSQLKSANNIVAINYLKERGLSSEIAQKFGVGYIADEWELVKNNFGR 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
              S++ ++  G+LI+ D     YDRFR R++FPIR  RG+VI FGGR + +G + KYLN
Sbjct: 180 DKASQDALVSGGMLIENDKGRR-YDRFRGRVMFPIRDRRGRVIGFGGRVIGEG-TPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +FHKGK LY  + AL                   ++VEGYMDV++L Q GV   V
Sbjct: 238 SPETPIFHKGKELYGLYEALQA----------YKDLPQALVVEGYMDVVALAQFGVDYAV 287

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +SLGTA T   ++LL++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L  
Sbjct: 288 ASLGTATTGDHMQLLFRQTSTVVCCYDGDRAGREAAWRAMEQALPYLNDGRQLKFMFLPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPD++IR YGK AFE+ I +S  L++ +++   +    ++ + +A+L       I+ +
Sbjct: 348 GEDPDTYIRQYGKEAFEREIAQSESLINFMFRSLIDQVDTSSREGKAKLTTLAVPLIDKV 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               LR Y  + +   L  + +  + +                      +       +  
Sbjct: 408 PGGTLRLYLREQLGKTLGIMDESQLQQLI-------------------SKQGAPETKRQV 448

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                      ++  L+ +P + Q      +        L  L+  L  +     +    
Sbjct: 449 QPDIKRTAMREVITLLLQNPNLAQLVPDLSSVQDIPLPGL-SLFLQLLENCRHNPHITTG 507

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ +        +LL +L              +  +  +     Q +          +Q 
Sbjct: 508 QLLEYWRGDKNEKLLSRLAAWELHID-QDNIQDVFMDSLDNILAQCIN---------QQI 557

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           E ++ +  + T     E+   L++++ E+  
Sbjct: 558 ESLQTK--ERTLGLSVEEKRELLALMLELKA 586


>gi|313903913|ref|ZP_07837293.1| DNA primase [Eubacterium cellulosolvens 6]
 gi|313471062|gb|EFR66384.1| DNA primase [Eubacterium cellulosolvens 6]
          Length = 594

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/628 (25%), Positives = 270/628 (42%), Gaps = 49/628 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I+++     I ++I QYV   RR  N     Y+  CPFH+EKT SF  +  K 
Sbjct: 1   MRYTDEIIEEVREKNDIVDVISQYVKLTRRGNN-----YFGLCPFHNEKTGSFSVSPVKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            +YCF C   G+  +FL      +F E+++ LA  AGV LP      +       ++ L+
Sbjct: 56  MFYCFGCGKGGNVYTFLMEYENYTFQEAIKVLAERAGVKLPEIEYTKEQMDAADKKSRLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + +VA  +F+  L++   +    YL  RG+    ++ F LGYA   R  L  +L++KG+
Sbjct: 116 EVNKVAAGYFYMKLRSPAGQHGLAYLKGRGLSDETMKNFGLGYADKYRNDLYNYLKKKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +++ + ++GL    D      D+F NR+++PI  +  +VI FGGR + +GE  KYLNSPE
Sbjct: 176 ADDLLKDSGLF-HFDERRGFSDKFWNRVMYPIMDASSRVIGFGGRVMGEGEP-KYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F+K +NLY    A    +K              I+ EGYMDV+S+ QAG  N V+SL
Sbjct: 234 TEIFNKSRNLYGLHVARRTRRK------------NFIICEGYMDVISMHQAGYTNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT  Q  L+ + + ++++ +D D  G++AA +AI +       G     V L   +D
Sbjct: 282 GTALTSQQCSLMSRFTKQVLVIYDMDGAGVKAALRAIPM---LRQAGLSTKVVDLKPHKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD F++  G  AFE+ +  +      + +        + P++++         I  I+D+
Sbjct: 339 PDEFLKAEGAEAFEERLERAENSFMFVIRMLEAEHDMSDPEDKSRFFHECAAKIVEIEDE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y  A+  R         ++ +            R  K    R    +    K   
Sbjct: 399 IERKSYIDAVAARYNIDVDLLNSQVNKEALKGIGRTEIRVPKPAPGRAQAKTGNADKE-- 456

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  +L  L + P ++    +  +   + N   +K+   ++      K   P  I 
Sbjct: 457 -----QKLMLTWLTDWPHLIGRISEYFSPEDFTNPMYRKVAEMVWEQASAGK-VSPASII 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               E      +  L                +  D R+ +   L   KR  + SR     
Sbjct: 511 STFTESEEQTEVASLFNTNIAVD--------SDDDRRKAFFDVLCRMKRQSIDSR----- 557

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHI 626
               A     G+      +++    +  
Sbjct: 558 ----ADSLDPGDMGGFMKIMNERKRLEK 581


>gi|27262500|gb|AAN87531.1| DNA primase [Heliobacillus mobilis]
          Length = 643

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 165/666 (24%), Positives = 279/666 (41%), Gaps = 55/666 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M      ++++   I I  ++  YV   R+      G Y   CPFH EKTPSF  +  K 
Sbjct: 1   MK-DPQIVEEIRYRIDIVEIVADYVSLKRQG-----GRYTGLCPFHSEKTPSFTVSREKQ 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118
           +++CF C   GD  +F+      +F E++++LA  AGV LP     P  +          
Sbjct: 55  YFHCFGCGTGGDVFTFVMLRENLTFPEALKKLAERAGVTLPEQKLTPTQQALRTAVEQGR 114

Query: 119 RLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L   A + F   L+   R ++   YL  RG+       F LGY+P     L E L ++G
Sbjct: 115 ALHRRAAELFFRCLREDTRARQAREYLSRRGLSDTVTVAFGLGYSPPGWDFLTERLVREG 174

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           ++ E++ + GL++    +   YDRFRNR++FPI  ++G+ +AFGGR L   E  KYLNSP
Sbjct: 175 YAPEELEQFGLIVPRQGADGYYDRFRNRIMFPIFDAQGRPVAFGGRVL-DDEIPKYLNSP 233

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET L+ KG++LY    A   ++               ILVEGYMDV++  Q  +   V+S
Sbjct: 234 ETPLYKKGQHLYGLHKAGPAIR----------EKGIAILVEGYMDVIACHQHDIPQAVAS 283

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA+T  Q RLL + +PR+++C+D D  G+ A  KA +++      G ++  + L  G+
Sbjct: 284 LGTAMTPEQGRLLLRYAPRVLICYDADRAGIEATVKAGEILTRL---GAQIQVLTLPDGK 340

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD F++ +G ++F ++   +       + R        T   +      L   +  I  
Sbjct: 341 DPDEFLQKHGASSFWQMADNAPAFFSFCYSRVASQYDLTTVAGKVAAVRELAPQLLIIPS 400

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP--------------- 462
              +    Q +   ++      + E  G  R  K   R   ++ P               
Sbjct: 401 AIEQEANIQWLAREIRLSEAAIMEELRGLSRNTKSYLRGDRKENPRNTNYTSAQKNETES 460

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN-ELQKLWSF 521
           S   +   L       +       L+  ++  P  ++  ++ L +        LQ++   
Sbjct: 461 SASTVVKGLPDRTNGDRQEQAWRYLIYWMVGTPERVRWVFERLGNEIPQVQGPLQEILEA 520

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L +   E +  L   + + L           L              E     +++   + 
Sbjct: 521 LVAVSREGQGVLVGRVAEGLVAEETKAYFSAL------------LVEDLEGALQESVLED 568

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
                R+  L  +   +E Q+  ++  G+ E    L+  L  +     Q  S+ A   G 
Sbjct: 569 CVNTLRYGWLVEEIARLEIQVEALSRSGDMEALQRLLPQLSNLQ----QARSRAARRFGA 624

Query: 642 GKMSGR 647
             + GR
Sbjct: 625 MPLGGR 630


>gi|329298674|ref|ZP_08256010.1| DNA primase [Plautia stali symbiont]
          Length = 581

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 180/624 (28%), Positives = 285/624 (45%), Gaps = 57/624 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  +  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVSGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIR 119
           YYCF C  KG+ + FL       F+ESV+ LA   G+ +P          +   +  L +
Sbjct: 59  YYCFGCGAKGNAIDFLMNHDRLDFVESVEELATQHGLEVPYEAGNGPSPMERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E    F+  SL+N + K    YL  RG+    I+ F +GYAP    ++ +   Q+   
Sbjct: 119 LLEGLDSFYQQSLRNPQAKSAQQYLATRGLSQQVIDHFAIGYAPAGWDNVLKRFGQQKED 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            E ++E G+L+  D+   +YDRFR+R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RESLMEVGMLVSNDSG-RTYDRFRDRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 PIFHKGRQLYGLYEAQKNHPQPAR----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRSTDNVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +T D R +L       I+ I  + 
Sbjct: 347 DTLVRKEGKAAFEARMEQAMPLSTFLFDSLMPQVDLSTRDGRTKLATLALPLISQIPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +        +  +       P +R              
Sbjct: 407 LRIYLRQTLGNKLGILDDNQLDKL----MPKQAESNTAPVAPPLKRTTM----------- 451

Query: 480 PSLREAALLLTLINHPAILQ--EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P           L   +        L+  L     E       ++
Sbjct: 452 -----RVLIALLVQNPQFAAIVPVLDGLEQSKLAGLP---LFVELVRRCTENPSLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +      F + L+ L                   +  + +Q +LA       L ++ E 
Sbjct: 504 LELYRGTEFSQPLETLATWNHMIV---------DDEAEEVFQDSLASIYDA-ALEQRLEA 553

Query: 598 IEKQIAQVTAKGEAEKTAILISIL 621
           +   IA+   +G +         L
Sbjct: 554 L---IARDRTEGLSAAERREFWAL 574


>gi|269103528|ref|ZP_06156225.1| DNA primase [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163426|gb|EEZ41922.1| DNA primase [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 584

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 167/633 (26%), Positives = 283/633 (44%), Gaps = 66/633 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DL+    I ++I   V   ++  N     + ACCPFH+EKTPSF  +  K F
Sbjct: 4   RIPRSFIDDLISRYDIVDVIDSRVKLKKKGKN-----FGACCPFHNEKTPSFSVSQEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117
           Y+CF C   G+ L F+       F+E+++ LA+  G+ +P  +         +   + +L
Sbjct: 59  YHCFGCGAHGNVLDFVMEFDRLEFVEAIEELASQLGIEVPRENDNGSAPSGPRSAEKRNL 118

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             ++     F+   L+    +    YL  RG+    ++ F +GY PD    +R    +  
Sbjct: 119 YDVMAHIAQFYQSQLRTDEGQLAIDYLKGRGLSGEIVKKFAIGYVPDQWDLVRNRYGRDE 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S++ +++ G+LI+ DN    YDRFR R++FPI   RG+VI FGGR L    + KYLNSP
Sbjct: 179 ASQQALVDMGMLIENDNGRR-YDRFRGRVMFPILDRRGRVIGFGGRVL-GDGTPKYLNSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHKG+ LY     L   ++  R          I++VEGYMDV++L Q GV   V+S
Sbjct: 237 ETPIFHKGRELYGLHQVLETHREPER----------ILVVEGYMDVVALAQFGVDYAVAS 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGT+ T   ++ L++ +  +V C+DGD  G  AA++A++  L +L+ G  + F+ L  GE
Sbjct: 287 LGTSTTSEHIQTLFRQTSTVVCCYDGDRAGREAAWRAMEQALPYLLDGRELKFMFLPDGE 346

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD++IR YGK  FE  +  ++ L+D ++   TE  +  T + R++L    K  I  +  
Sbjct: 347 DPDTYIRQYGKEEFEHQVSSAMSLIDFMFNSLTEQANMETKEGRSKLMTLAKPLIEKVAG 406

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           + LR Y    +   L     +   E     +   +  +   ++ P               
Sbjct: 407 EALREYLINKLGYSLGLPPDQIRLESKRPQQEKPRLVQQNLKRTPM-------------- 452

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ-------KLWSFLFSDFVEQK 530
                    ++  LI +P  + +       + +D    +        L   +        
Sbjct: 453 -------RDVVALLIQNPIFVNQ-------LEFDTQAFEGIEVAGLNLLLTIVEKCRTNP 498

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                ++ +         LL +L         W      +       +  A+      + 
Sbjct: 499 NITTGQLLESWRGSKNEALLARLAS-------WELPLSKDEDSTLDVFLDAMD-NVIGQC 550

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
           + +Q E+++ +    T     E+   L S+L +
Sbjct: 551 VQQQIEKLQAK--SSTVGLSVEEKQELQSLLLD 581


>gi|196248950|ref|ZP_03147650.1| DNA primase [Geobacillus sp. G11MC16]
 gi|196211826|gb|EDY06585.1| DNA primase [Geobacillus sp. G11MC16]
          Length = 599

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/632 (25%), Positives = 271/632 (42%), Gaps = 44/632 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+ +   + I ++I +YV   ++  N     Y+  CPFH EKTPSF  +  K  
Sbjct: 4   RIPEETIEAIRRSVDIVDVISEYVQLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDL 117
           ++CF C   G+  +FL  + G  F+E+ +RLAA AG+ L           + K      +
Sbjct: 59  FHCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAKAGIDLSAYQLNVRGHDDGKAGEAKVM 118

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I    +   F+HH L      +    YL  RG     I  F++GYAPD+  +  + L   
Sbjct: 119 IEAHTLLKRFYHHLLVYTKEGQAALDYLQARGWTKETINRFEIGYAPDAPDAAAKLLDSH 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            FS   + +AGL+          DRFRNR++FPI   RG+ + F GR L +G+  KY+NS
Sbjct: 179 SFSLPMLEKAGLVTKK-EDGRYVDRFRNRIMFPILDHRGETVGFSGRLLGEGQP-KYVNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F KG  LY+F  A   ++K              +L EG+ DV+S  QAG+   V+
Sbjct: 237 PETPIFRKGMLLYHFHEARVPIRK----------RQEALLFEGFADVISAVQAGIDYAVA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT+LTE Q R+L + +  + +C+DGD+ G+ AA++A +        G RV    +  G
Sbjct: 287 TMGTSLTEEQARILRRHAETVTICYDGDNAGMEAAWRAAE---QLSALGCRVKVASIPNG 343

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +IR YGK  F   I  + PL+          ++     +R      +   I  + 
Sbjct: 344 LDPDEYIRVYGKERFVGEIAAAQPLMAFKMNHLRRGKNLQHEGDRLRYIEEVLREIGKLP 403

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               + YY + + D           + S Y +   K       +  S+       +  KL
Sbjct: 404 SPVEKDYYVRQLADEFSLSLSALNEQLSRYKQETSKPRETSANEKASRPT-----LTKKL 458

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++    +     + +   R++  E + L +++++ + E        
Sbjct: 459 LPAFHNAERLLLAHMMRSRDVALFVQERVGG-RFNIEEHRALAAYIYAFYEEGHEADVGA 517

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +  RL +               +  L   T + +  ++    +  L   K         +
Sbjct: 518 LMIRLPDEL--------QSLASELSLLLVTDDVSEQELADYIKHVLNHPKWL-----MLK 564

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           E E++  +   + +    A +   + E+   +
Sbjct: 565 EKEQEKIEAERRKDFLTAARIAKEMIEMKKML 596


>gi|138896057|ref|YP_001126510.1| DNA primase [Geobacillus thermodenitrificans NG80-2]
 gi|134267570|gb|ABO67765.1| DNA primase DnaG [Geobacillus thermodenitrificans NG80-2]
          Length = 599

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/632 (25%), Positives = 272/632 (43%), Gaps = 44/632 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+ +   + I ++I +YV   ++  N     Y+  CPFH EKTPSF  +  K  
Sbjct: 4   RIPEETIEAIRRSVDIVDVISEYVQLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDL 117
           ++CF C   G+  +FL  + G  F+E+ +RLAA AG+ L           + K      +
Sbjct: 59  FHCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAKAGIDLSAYQLNVRGHDDGKAGEAKVM 118

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I    +   F+HH L      +    YL  RG     I+ F++GYAPD+  +  + L   
Sbjct: 119 IEAHTLLKRFYHHLLVYTKEGQAALDYLQARGWTKETIDRFEIGYAPDAPDAAAKLLDSH 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            FS   + +AGL+          DRFRNR++FPI   RG+ + F GR L +G+  KY+NS
Sbjct: 179 SFSLPMLEKAGLVTKK-EDGRYVDRFRNRIMFPILDHRGETVGFSGRLLGEGQP-KYVNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F KG  LY+F  A   ++K              +L EG+ DV+S  QAG+   V+
Sbjct: 237 PETPIFRKGMLLYHFHEARVPIRK----------RQEALLFEGFADVISAVQAGIDYAVA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT+LTE Q R+L + +  + +C+DGD+ G+ AA++A +        G RV    +  G
Sbjct: 287 TMGTSLTEEQARILRRHAETVTICYDGDNAGMEAAWRAAE---QLSALGCRVKVASIPNG 343

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +IR YGK  F   I  + PL+          ++     +R      +   I  + 
Sbjct: 344 LDPDEYIRVYGKDRFVGEIAAAQPLMAFKMNHLRRGKNLQHEGDRLRYIEEVLREIGKLP 403

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               + YY + + D           + S Y +   K       +  S+       +  KL
Sbjct: 404 SPVEKDYYVRQLADEFSLSLSALNEQLSRYKQETSKPRETSANEKTSRPT-----LTKKL 458

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++    +     + +   R++  E + L +++++ + E        
Sbjct: 459 LPAFHNAERLLLAHMMRSRDVALFVQERVGG-RFNIEEHRALAAYIYAFYEEGHEADVGA 517

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +  RL +               +  L   T + +  ++    +  L   K         +
Sbjct: 518 LMIRLPDEL--------QSLASELSLLLVTDDVSEQELADYIKHVLNHPKWL-----MLK 564

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           E E++  +   + +    A +   + E+   +
Sbjct: 565 EKEQEKIEAERRKDFLTAARIAKEMIEMKKML 596


>gi|315504273|ref|YP_004083160.1| DNA primase [Micromonospora sp. L5]
 gi|315410892|gb|ADU09009.1| DNA primase [Micromonospora sp. L5]
          Length = 631

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 147/648 (22%), Positives = 251/648 (38%), Gaps = 44/648 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I+++I + V           G+    CPFHDEK+PSF+ + ++  
Sbjct: 12  RIRDEDIALVRERTAIADVISEVVTLKSAG----GGNLKGLCPFHDEKSPSFNVSPARNV 67

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           +YCF C V GD + FL      SF+ESV+RLAA AG+ L         P+   ++  +  
Sbjct: 68  FYCFGCGVGGDAIKFLMDAEHLSFVESVERLAARAGIQLRYVEDDRSTPRTRPQQGQRQR 127

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L+     A +F+   L  A  +    +L  RG D  A E +  G+APD    L +HLRQ+
Sbjct: 128 LVAAHAAAVEFYRAQLTTAGARPAREFLAGRGFDRAAAERYGCGFAPDGWDLLTKHLRQQ 187

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLN 235
           GF+ ++++  GL     +  +  DRFR RL++PIR   G VI FG R L   +   KYLN
Sbjct: 188 GFTHDELVTGGLSRPARSG-SLIDRFRRRLMWPIRDITGDVIGFGARKLFDDDDGPKYLN 246

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +PET ++ K   LY    A   + K  +          +++VEGY DV++   A V   V
Sbjct: 247 TPETPIYKKSHVLYGIDQAKREIAKQGK----------VVVVEGYTDVMACHLADVPTAV 296

Query: 296 SSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           ++ GTA     + +L +        +  I+  FDGD  G +AA +A +     +    R 
Sbjct: 297 ATCGTAFGGDHISVLRRVLFDSDERAGEIIFTFDGDAAGQKAALRAFEDDQRFVG---RT 353

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
              +     DP       G  A   L+    PLVD   +        +T D R E     
Sbjct: 354 FIAVSPDNMDPCELRLAKGDLAVRDLVARREPLVDFALRHVISRFDLDTVDGRVEAMRRA 413

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              +  IKD++ R  Y + +   L    +                        P Q    
Sbjct: 414 APLVAKIKDREKRPEYVRKLAGDLGMEIEPVQRAVLTAANGQPAPGTPAAPARPRQG--- 470

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                  +    S+ E   L   +  P +    +  +    Y +     + + + +    
Sbjct: 471 ----APSVDSPRSMVEREALKLALQEPVLAGPMFDAVEATDYQHPVHVAVRAAVAAAGGA 526

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                     +R+ +       + L   + +  +     +         Y        ++
Sbjct: 527 SGATGGAVWIERVRDACDDLAGQAL---IGELAVEPLRIDGEPDP---RYVSITMARLQW 580

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             ++ +  +++ +I +V      ++   L   L  +      +  Q A
Sbjct: 581 SSVTGRIRDLKSKIQRVNPVSNKDEYFALFGELLSLEQHARALREQAA 628


>gi|156932575|ref|YP_001436490.1| DNA primase [Cronobacter sakazakii ATCC BAA-894]
 gi|156530829|gb|ABU75655.1| hypothetical protein ESA_00357 [Cronobacter sakazakii ATCC BAA-894]
          Length = 581

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 173/628 (27%), Positives = 288/628 (45%), Gaps = 53/628 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L  
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPTQIERHQRQTLYE 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  +L+    +    YL +RG+    IE F +GYAP    ++ +       +
Sbjct: 119 LLDGLNGFYRQALQAQSAEPARQYLAKRGLSESVIERFAIGYAPPGWDNVLKRFGNNSEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L      KYLNSPET
Sbjct: 179 RKSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  +                 +   +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEVQQS----------DPNPPRLLVVEGYMDVVALSQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T   +++L++++  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TATTAEHIQMLFRVTNNVICCYDGDRAGRSAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         +TPD RA+L       I+ +  + 
Sbjct: 347 DTLVRQEGKAAFEARMEQAQPLSTFLFNNLLPQVDLSTPDGRAQLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +           +       K  +                
Sbjct: 407 LRIYLRQELGNKLGILDDSQLERLMTRQADNSQTRPAPALKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +       LA +        +L++ L +  + Q      ++ +
Sbjct: 452 -----RILIGLLVQNPELAPLVP-SLAALDKTKLPGLELFAELVNTCLSQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                     L++L         W    + +I    + +  AL  +    +L  +  E+ 
Sbjct: 506 HYRGTKEAATLEKLST-------WDDIADKDI--AEKTFTDALD-HMFDSVLELRLTEL- 554

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627
             IA+   +G +      + I+ E   +
Sbjct: 555 --IARSRTQGLSAAEREEVRIITEARAR 580


>gi|163738641|ref|ZP_02146055.1| DNA primase [Phaeobacter gallaeciensis BS107]
 gi|161387969|gb|EDQ12324.1| DNA primase [Phaeobacter gallaeciensis BS107]
          Length = 749

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/448 (39%), Positives = 271/448 (60%), Gaps = 10/448 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   + ++ ++G+ V WD+RK+N  KGD WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPPGFLDELRTRVSLTQVVGRKVMWDQRKSNQGKGDMWAPCPFHHEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD L F+       F+E+VQ LA  AG+ +P  DP+ ++K+  +  L  +
Sbjct: 61  FYYCFGCHAKGDALKFVQETENVGFMEAVQILAQEAGMEMPARDPRAQQKQDHRAQLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF   L     +    YL  RG+   A+E +++G+AP+   +L + LR KG  E
Sbjct: 121 MEQAVRFFRLQLNTRAGEGARSYLARRGLSGPALERWEIGFAPEGWQNLWDALRGKGVPE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E I+ AGL    +     YD FRNR++FPIR +RG+ IAFGGR +   ++ KYLNSPET 
Sbjct: 181 ELIMGAGLAKPSNKGGKPYDTFRNRIMFPIRDARGRAIAFGGRAMDPRDNAKYLNSPETA 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG++LYN   A     KS            +++ EGYMDV++L + G +  V+ LGT
Sbjct: 241 LFDKGRSLYNHGPARTASGKS----------GQLLVAEGYMDVIALAEGGFEASVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QL++LW+++   ++  DGD  GLRAA + IDL L  L  G  + F L+  G+DPD
Sbjct: 291 AITENQLQMLWRIADEPIIALDGDTAGLRAAMRLIDLALPLLEAGKSLRFALMPEGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G+ A + ++ +++P+V +LW+RETE + F++P+ +A L+  L++ I  I+D  +
Sbjct: 351 DLIRGEGREAVQAVLDQAMPMVRLLWQRETEGKVFDSPERKAALDKALRDKIRLIRDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGR 448
           R +Y + ++D   +LF+         G 
Sbjct: 411 RRHYGEDLQDLRWELFRGGRPREEAAGS 438



 Score = 63.4 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 66/208 (31%), Gaps = 19/208 (9%)

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
                   P +    S L  G       +REA +L T+I  PA++ +    L  +    +
Sbjct: 543 RGKNAPPQPLETTRNSLLAGGSEESLARVREAVILATVITTPAVVAKYEVNLERMACIGS 602

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           +   L   +    ++    L EEI           L       +          E   + 
Sbjct: 603 DHALLRDLVLRHGIDAPERLKEEIAAAAGAHALENLFALRHVAISPCLRRPGDVEVASLT 662

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQI-------------AQVTAKGEAEKTAILISI 620
           + + + +  A     R L  +  E E+ +                 A+ +A ++      
Sbjct: 663 LAEEFAKLEAS----RGLDAELAEAEEDLDGLADEAVTWRLGQAAEARNKAVRSENEDRA 718

Query: 621 LHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            ++V     ++  +E   + FG +  R+
Sbjct: 719 QYDVGENGARLNREER--DAFGALLERI 744


>gi|295695447|ref|YP_003588685.1| DNA primase [Bacillus tusciae DSM 2912]
 gi|295411049|gb|ADG05541.1| DNA primase [Bacillus tusciae DSM 2912]
          Length = 622

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 173/636 (27%), Positives = 284/636 (44%), Gaps = 36/636 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P D I  +   + I ++IG+YV   R         Y   CPFH E+TPSF  +  K  
Sbjct: 4   RIPEDLIDRVRQSVDIIDVIGEYVHLRRVGR-----SYVGLCPFHSERTPSFTVSREKQV 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIR 119
           Y+CF C   G  + FL A+ G +F E+V++LAA +G+P+P    D +     + + D +R
Sbjct: 59  YHCFGCQAGGTVIHFLMAIDGIAFQEAVRKLAARSGIPVPDVQEDEEESGYAEKRRDALR 118

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             E+A  ++ H L N    +    YL++R I +     F+LG AP SR SL   L ++G 
Sbjct: 119 AYELAAKWYQHLLLNTVYGRPGRTYLEKRHISTTTAHDFQLGLAPASRDSLMAFLERRGL 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
               ++E GL          YDRFRNRL+FPI   +G+V+AFGGR L +GE  KYLNSPE
Sbjct: 179 DPVLLMEIGLG--ATGEHGRYDRFRNRLMFPIWDGQGRVVAFGGRVLGRGEP-KYLNSPE 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LFHKG++LY +  A + L+K+ R            L+EGYMDV+++ QAG    V+SL
Sbjct: 236 TPLFHKGRHLYPWHKARSALRKTRRA----------FLLEGYMDVVAMHQAGFTAAVASL 285

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE Q  +L      +++ +DGDD G RAA +A  L       G     V L  G D
Sbjct: 286 GTALTEEQASMLKHNVDEVIVVYDGDDAGRRAAVRAGLL---LQRVGVTAKAVRLPPGMD 342

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD  +R  G  A ++ L  E++ L         + R+ +  ++R        N +   + 
Sbjct: 343 PDDLLREKGPEAMKRVLEQETMSLTAFRLADLRDRRALSNVEDRVSFLQEALNVLADEES 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 + Q++        +    +     R  +   R +     +  +  ++  +    
Sbjct: 403 AVEAETHLQSLASEFHISLEALRHDL-DEARQRQTLTRDKHGNKWNTNIDPTTGPQMNHY 461

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  +L +++  P   ++  + +AD  +       L + L+  + +     P   
Sbjct: 462 PPHVAAERQMLTSMLLDPGAARQVEEVVAD-EFCVESHAVLAAHLYRYYGDGGTADPTAF 520

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            + + +     ++  L  +             ++ D    ++ A     R+    RQ  E
Sbjct: 521 LETVDDPAVRSVVTSLIMEHERRRDQG-RAGWSLEDCFATWRMA-----RYEDALRQVRE 574

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                 +    G  E+   L   +  +  +I  +++
Sbjct: 575 ---SFDEAARAGRFEEMYRLQEQMKSLREEIDALKN 607


>gi|238896570|ref|YP_002921313.1| DNA primase [Klebsiella pneumoniae NTUH-K2044]
 gi|330003819|ref|ZP_08304769.1| DNA primase [Klebsiella sp. MS 92-3]
 gi|238548895|dbj|BAH65246.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328536803|gb|EGF63115.1| DNA primase [Klebsiella sp. MS 92-3]
          Length = 581

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 180/629 (28%), Positives = 297/629 (47%), Gaps = 54/629 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFISDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P    +   + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPYEAGNGPSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL          YL +RG+ S  I  F +GYAP    ++ +       +
Sbjct: 119 LLDGLNAFYQQSLMQPAADPARQYLAKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L      KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNPEPPR----------LLVVEGYMDVVALAQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++++  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         +TPD RA+L       I  +  + 
Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSTPDGRAQLSTLALPLITQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +                     P+ +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDAQLERL-------MPKQAENGAPRPAPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +                 L  L+S L    + Q      ++ +
Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLEGLDSRKMPGL-SLFSELVKSCLAQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           +         L++L        +W    + +I    Q +  +L  +    LL  ++EE+ 
Sbjct: 506 QYRGTKEAATLEKL-------SMWDDIADKDI--AEQTFTDSLN-HMFDSLLELRQEEL- 554

Query: 600 KQIAQVTAKG-EAEKTAILISILHEVHIQ 627
             IA+    G  +E+   L +I  E+  +
Sbjct: 555 --IARDRTHGLSSEERRELWTISQELAKK 581


>gi|125973413|ref|YP_001037323.1| DNA primase [Clostridium thermocellum ATCC 27405]
 gi|281417616|ref|ZP_06248636.1| DNA primase [Clostridium thermocellum JW20]
 gi|125713638|gb|ABN52130.1| DNA primase [Clostridium thermocellum ATCC 27405]
 gi|281409018|gb|EFB39276.1| DNA primase [Clostridium thermocellum JW20]
 gi|316940352|gb|ADU74386.1| DNA primase [Clostridium thermocellum DSM 1313]
          Length = 600

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 181/613 (29%), Positives = 291/613 (47%), Gaps = 39/613 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           YP + I+++ +   I +++G+YV  +R+  N     Y+  CPFH EKTPSF  + +K  Y
Sbjct: 5   YPEELIEEIRMSNDILSVVGEYVKLERKGKN-----YFGLCPFHSEKTPSFSVDPNKQLY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRLI 121
           YCF C   G  + F+  +    +IE+V+ LA  A + LP  D + E+   + + +L+R+ 
Sbjct: 60  YCFGCGKGGSVIQFVMEVENLDYIEAVKMLAERARIQLPEGDNEEERIIARKKQELLRIN 119

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             A  FF+  L + ++     YL +R +       F LGY+P+   +L  HLR+KG+ +E
Sbjct: 120 VEAARFFYEQLNDKKNLAPREYLTKRKVSGSIARKFGLGYSPEEWDALYNHLRKKGYDDE 179

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            ++++GL I    +   YDRFR R+IFPI   RG VI FGGR L    + KY+NSPET++
Sbjct: 180 ILLDSGL-ILKGKNGGYYDRFRGRIIFPIFDLRGNVIGFGGRVL-DNSTPKYMNSPETLV 237

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           ++K KNLY    A N  QK             II+VEGYMDV+SL Q G+ N V+SLGTA
Sbjct: 238 YNKRKNLYGLNFAKNSGQK------------RIIVVEGYMDVISLFQFGIINTVASLGTA 285

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE Q R+L K +  I++ +D D  G+ A  + +DL       G  V  +++  G+DPD 
Sbjct: 286 LTESQGRILKKYAEEIIISYDADTAGMAATMRGLDL---LNDIGCNVKVLIIPEGKDPDE 342

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           F++  G  AF KL+  +L LV+   K        NT + +        + ++ I +   R
Sbjct: 343 FVKKNGPEAFNKLVENALSLVEYKIKALKSTIDTNTTEGKINFLNKAADLLSKIDNNMER 402

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRY---WKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             Y + I        +    E     +    +K   R    K  + RL      K     
Sbjct: 403 EMYIKKISKEYDISQESIYAEILKRIKPKTVYKPLTRTLTAKNDNNRLKIEKNGKKSSYD 462

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           K    E  LL  L    ++ +    ++    + + + +++   +F  F E+K  +P E+ 
Sbjct: 463 KIIECERMLLCLLSIDNSLYKVVKDKIIVDEFKDEQNKEIAKIVFKRFEEKKGIVPAELI 522

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L       +  +L +            E N  D  +     +        L  +++EI
Sbjct: 523 N-LAGEETSGVFARLIQ-----------GECNFDDNIKAVMDIIK-KMELYRLEDRQKEI 569

Query: 599 EKQIAQVTAKGEA 611
            +Q++      E 
Sbjct: 570 LQQLSSGNLSTED 582


>gi|188532570|ref|YP_001906367.1| DNA primase [Erwinia tasmaniensis Et1/99]
 gi|188027612|emb|CAO95462.1| DNA primase [Erwinia tasmaniensis Et1/99]
          Length = 581

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 177/628 (28%), Positives = 281/628 (44%), Gaps = 52/628 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATLYGLEIPYESGSGPSQLERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    DF+  SL + +      YL +RG+    I+ F +G+AP    +  +        
Sbjct: 119 LMTGLRDFYQQSLDHGQSAGARDYLAQRGLSDEVIKHFSIGFAPAGWDNALKRFGSNPDD 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPI   RG+VI FGGR L      KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIHDKRGRVIGFGGRVL-GDGMPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + AL    +  R          +++VEGYMDV++L Q GV   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEALKNHPEPAR----------LLVVEGYMDVVALAQFGVDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFEK + +++PL   L+         +TPD RA+L       +  +  + 
Sbjct: 347 DTLVRKEGKDAFEKRMEQAMPLSTFLYDTLLPQVDLSTPDGRAQLATLALPLLRQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + D+L       + +         K A     K  +                
Sbjct: 407 LRIYLRQVLGDKLGIPDHIQLEKLLPEKAESAKAAAQPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +           + +      L+  L S           ++ +
Sbjct: 452 -----RILIGLLVQNPQLAAMVPSLDGLAQSETPGF-SLFVELVSTCAAHPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                 F + L+ L                 + D  +   Q          L R+ EE+ 
Sbjct: 506 LYRGTKFSQSLETLATW----------NHMIVDDEVETMFQDALASMYDNALERRLEELI 555

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627
            +    T    AE+     ++   +  Q
Sbjct: 556 AR--DRTHVLSAEERREFWTLSQALKKQ 581


>gi|320332069|gb|EFW88005.1| DNA primase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 651

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/668 (26%), Positives = 293/668 (43%), Gaps = 76/668 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKT SF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTSSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWENLYKHLSSDSLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF+  +   + PL D  +++ T+     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442
            LR    Q + +      +                                        +
Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPVDAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499
                +      + +       +  +    + +  + P+  E    A L TL++HP + +
Sbjct: 469 QEWTPKKTGGQNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +  +  +    ++    +L   L     +       ++  R      G LL+ L  +   
Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
              W    +            +L+  +R R L     +  +           E +A    
Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631

Query: 620 ILHEVHIQ 627
            L E+  +
Sbjct: 632 QLRELLNR 639


>gi|266623972|ref|ZP_06116907.1| DNA primase [Clostridium hathewayi DSM 13479]
 gi|288864211|gb|EFC96509.1| DNA primase [Clostridium hathewayi DSM 13479]
          Length = 587

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/612 (24%), Positives = 273/612 (44%), Gaps = 33/612 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP + ++++ +   I ++I  YV   ++ +N     Y+  CPFH+EK+PSF  + SK 
Sbjct: 1   MRYPEEVVEEVRMKNDIVDVISGYVKLQKKGSN-----YFGLCPFHNEKSPSFSVSPSKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+ ++F+      SF+E++Q LA  AGV LP      + ++   ++T L+
Sbjct: 56  MYYCFGCGAGGNVITFVMEYENYSFMEALQMLADRAGVALPKQEYSKEAKEAADLRTALL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +  +A +++++ L N + +  + YL +R +    I  F LG+A  +   L  +LR KG+
Sbjct: 116 EINRMAANYYYYQLTNPQGEAGYRYLRDRQLSDDTIRHFGLGFANKTSDDLYRYLRAKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            +  + E GL+        ++D+F NR++FPI     +VI FGGR +  GE  KYLNSPE
Sbjct: 176 DDRILKETGLVTI--EERGAHDKFWNRVMFPIMDVNNRVIGFGGRVMGAGEP-KYLNSPE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF K +NLY    A              +   +I++ EGYMDV+++ QAG  N V+SL
Sbjct: 233 TKLFDKSRNLYGLNYAR------------LSREKYILICEGYMDVIAMHQAGFTNAVASL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T     LL + + ++VL +D D  G +AA +AI +       G  +  + +   +D
Sbjct: 281 GTAFTTQHAALLKRYTDKVVLTYDSDGAGTKAALRAIPI---LRDVGISIRVLNMQPYKD 337

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AF + I ++             N     P+++ E    +   +    + 
Sbjct: 338 PDEFIKNMGAEAFRERIEQARNSFLFEIDVLKRNYEMEDPEQKTEFYNQVAKKLCEFPEA 397

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+       ++      +  G      +   +++  S +  +        S 
Sbjct: 398 LERDNYLEAVSREFFINYEDLKRLVNRMGARLGPVSPREEEESTSVKKKKDREDGKNQS- 456

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LL  LI +P +  +    +    +  +   ++   +F           E ++
Sbjct: 457 -----QRLLLTWLIENPFLFDKIEGIITPDDFIEDLYHQVARMVFDGHAAGNLNPAEILN 511

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +     ++  L        L +   +    +     ++    Y          EE+
Sbjct: 512 HFINDEEQYRVVAGLFNASLKESLDNEEQKKAFSETIMKVKKNSLDYASRNAAG--IEEL 569

Query: 599 EKQIAQVTAKGE 610
           ++ I +  A  +
Sbjct: 570 QRIIREQAALKD 581


>gi|306836613|ref|ZP_07469580.1| DNA primase [Corynebacterium accolens ATCC 49726]
 gi|304567535|gb|EFM43133.1| DNA primase [Corynebacterium accolens ATCC 49726]
          Length = 639

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 136/653 (20%), Positives = 251/653 (38%), Gaps = 52/653 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +    P+  ++G+YV                  PF DEKTPSFH    +G+
Sbjct: 5   RIPDSDIQAIRERAPLEEIVGEYVQLKPAG----HDSLKGLSPFKDEKTPSFHVRPQRGY 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118
           Y+CFS    GD  SFL  +   SF E+V+ +A   G  +         + +    +  LI
Sbjct: 61  YHCFSTGKGGDVFSFLMEMEQVSFPEAVEAVAQKIGYHINYQGGSTGARNEKPGTRQRLI 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              +   +F+   L+         +L +RG     I  F+ GYAP+   +  +HL + GF
Sbjct: 121 AANKAVHEFYRKQLETPEAATARNFLLDRGFSREVIYDFECGYAPEGWDTATKHLLRMGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           S E++  AG  I         DRF  RL++PI+   G VI FG R L   +   KY+N+P
Sbjct: 181 SFEELETAG--ISKMGKRGPIDRFHRRLLWPIKDLSGNVIGFGARKLFDDDKLGKYMNTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+HK K L+    A   +                ++VEGY DV+++  AG++  V+S
Sbjct: 239 ETMLYHKSKVLFGLDLAKRNIA----------EGHQAVVVEGYTDVMAMYAAGIKTAVAS 288

Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA     L++L             ++  FDGD+ G +AA +A D          +   
Sbjct: 289 CGTAFGGEHLQVLRRLMLDDSYFHGELIYTFDGDEAGQKAAMRAFD---GEQKFTGQSFV 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G  A   L+ + +P+ + + +    +   +T + R +       
Sbjct: 346 SVAPDGMDPCDLRLEKGDAAVRDLVADRIPMFEFVIQSVIADFRIDTAEGRLQALRRAVP 405

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  I+DQ L+  Y++ +   +     + +           K A     +       Q +
Sbjct: 406 IVAQIRDQPLQREYARRLAGWVGWNDPEEVLRQVRAEAKKPKKADTPTIRRFENAQPQPA 465

Query: 471 LVKGKLSKKPSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                +   PS +E         L   +  P ++   +  +    Y N+  + +   + +
Sbjct: 466 QQDVPMIHPPSPKETHLWPQREALKLALQMPEVVGSYFDGITADAYTNDAYRIVRQAISA 525

Query: 525 DFVEQKYFL------PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
               +K            +   + +      + +L  +        A          + Y
Sbjct: 526 VGGAEKGATMSGVDWIAAVAAEMQDLTGRNFVSELAVEAILPTDVGA----------EKY 575

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             ++    +  ++  Q  +++ Q+ ++    +      L + L  +     ++
Sbjct: 576 ADSVLSRLQETVVGDQIAQLKAQLGRMRPTDDEAGYNSLFADLIALEQARREL 628


>gi|153827662|ref|ZP_01980329.1| DNA primase [Vibrio cholerae MZO-2]
 gi|149737862|gb|EDM52767.1| DNA primase [Vibrio cholerae MZO-2]
          Length = 609

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 171/633 (27%), Positives = 289/633 (45%), Gaps = 68/633 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 27  IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 81

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113
           +CF C   G+ + F+       F E+++ LA+  G+ +      P           K + 
Sbjct: 82  HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 141

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+   LK   +K    YL  RG+    ++ F +GY  D    +R + 
Sbjct: 142 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNF 201

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  SE+ ++ AG+LI+ DN    YDRFR R++FPIR  RG+VI FGGR +++  + KY
Sbjct: 202 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 259

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q G+  
Sbjct: 260 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGIDY 309

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L+LL++ +  ++ C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 310 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 369

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK  FE+ +  + PL   L++   E    N  + + ++ L       
Sbjct: 370 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 429

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D  L+    + + +R     Q             KK  +  ++  P + + ++ +
Sbjct: 430 IDKIPDPFLQEVLEKLLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM 479

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  LI +P+  +      +        L   +S +     +  +
Sbjct: 480 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 525

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +   +     LL +L        +     E  +  + +   Q +         
Sbjct: 526 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 575

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            +Q E ++ +      +     +      L ++
Sbjct: 576 EKQIENLQAK------ERSVGLSTEEKRELQDL 602


>gi|167463433|ref|ZP_02328522.1| DNA primase [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322383679|ref|ZP_08057430.1| DNA primase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151891|gb|EFX44834.1| DNA primase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 608

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/636 (25%), Positives = 288/636 (45%), Gaps = 40/636 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+ +L H  I++++G+YV   ++            CPFH E TPSF     +  
Sbjct: 5   RIPEEVIEAVLKHHDIADVVGKYVHLTKQG-----HYLKGLCPFHSENTPSFTVTPERQI 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIR 119
           Y+CF C   G  + FL  + G SF E+V  LA  AG+P+     DP   K+++ +T++I+
Sbjct: 60  YHCFGCGAGGGIIKFLREIEGYSFAEAVNHLAEEAGIPITWETADPVQTKQQQERTEVIK 119

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             + A   + + LKN  + K+   YL  RGI    I+ F++GYAP    +L   L +  F
Sbjct: 120 AHDHAAKVYQYILKNTEQGKQALDYLRSRGIADKLIDRFQIGYAPARMDTLVRQLERNQF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S   + + GL+    +     DRFR+R++FP+    G++IAF GR L      KY+NSPE
Sbjct: 180 SLSLMEKGGLISIKSDKNGYIDRFRDRIMFPLHDFHGKIIAFAGRAL-GDVKPKYMNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           +ILF+K +++YN   A    +K          S  I+L+EGYMDV+   +AG+ N V+++
Sbjct: 239 SILFNKSRSIYNLHHARAEARK----------SGEIVLLEGYMDVIKAWEAGITNAVATM 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT  Q  +L + + R+++C+DGD  G  AAYK+I +       G  V   ++  G+D
Sbjct: 289 GTALTPEQSEILKRNADRVIVCYDGDPAGQNAAYKSIPI---LEKSGCAVKVAMIPEGKD 345

Query: 359 PDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD +I  YG   F  +++ +++P +        +N   +   ++          I  +  
Sbjct: 346 PDEYITAYGPERFVRQIVEQAVPAMKYKLLFIRKNFKLHNEFDKLRYLKTATKMIAALHS 405

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK----GPSQRLMQSSLVK 473
              R +Y + +        +    + +      +K    RD K       +         
Sbjct: 406 PIDREHYLKQLSSDFDTSLESLKQDVAAIRFDLEKKQSLRDNKEFLWNNVRNNGNRVQKS 465

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             L       E  LL  +++ P + +   +++ D  ++  +   L ++L++ + +     
Sbjct: 466 PSLFPAYHNAERQLLAIMMHDPEVCRYVQEQVGD-EFNVEDHAVLAAYLYAYYSQYAEPN 524

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                  L +     L   +       GL           V   Y + +  Y R     +
Sbjct: 525 LGRYMAMLEDTNLENLASSIALIGAKHGLN--------DKVIDDYIREIKKYPR----QQ 572

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + ++ ++++ Q    G+  + A ++S +  +  Q+ 
Sbjct: 573 EIKQKKEEMRQAELSGDPLRAAQILSEIIALEKQLK 608


>gi|290967747|ref|ZP_06559302.1| DNA primase [Megasphaera genomosp. type_1 str. 28L]
 gi|290782263|gb|EFD94836.1| DNA primase [Megasphaera genomosp. type_1 str. 28L]
          Length = 603

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 171/632 (27%), Positives = 291/632 (46%), Gaps = 42/632 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            +  +FI+ +     I +++ +YV   ++  N     +WACCPFH EKT SF     KGF
Sbjct: 3   KFSSEFIEQVRQANDIVSVVSEYVSLKQQGRN-----FWACCPFHHEKTASFSVAADKGF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIR 119
           +YCF CH  GD  +F+      SF E+V RLA  A + LP     P+   ++ +      
Sbjct: 58  FYCFGCHAAGDVFAFIMKQENLSFTEAVTRLAERAHISLPKTEQSPQETARQNLCRRFFE 117

Query: 120 LIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + E+A +FFH+  L+++  K    Y   R +    I  FKLG+APDS + L +  +Q+G 
Sbjct: 118 INEMAGNFFHNCLLQSSLGKEGLAYFHSRHVSDDTIRAFKLGFAPDSWHMLTKAFQQRGV 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S  +++  GL  + +     YD FR R+IFPIR  RG+++ FGGR L      KYLNSPE
Sbjct: 178 SGAELVRLGLAKEKNG--NFYDAFRKRVIFPIRDGRGRIVGFGGRVL-DDSKPKYLNSPE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F+K   L+    A   + K              ILVEGYMDV+S    G+ NVV+SL
Sbjct: 235 TPIFNKRHILFALDMAQPAIYK----------EGCAILVEGYMDVVSAHNRGITNVVASL 284

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T  Q RLL + + ++VL +D D  G +A  +A+++V         +  + L +G+D
Sbjct: 285 GTAFTTEQARLLQRQAAQLVLAYDMDAAGRQATMRAMEIVRGLH---VSIRVLSLGQGKD 341

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I   G  AF + +  +   +D + +   +      P+ ++ +   +   +  I D+
Sbjct: 342 PDEYITTVGPDAFRQAVAAAPNTLDYMLQTALQTYDSTVPEGKSAIMASIMPAVARIDDR 401

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            +   +      RLQ       +E   + R+ +++   +  K      ++  L   + + 
Sbjct: 402 IVLEAFLTKAAQRLQVEETAVRSE---FNRFVERHPELKQGKLVITPHLERRLADSRGTD 458

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             +  E  +L  L+ +P   +   + +    + N   Q ++ F+   + E++ +   +I 
Sbjct: 459 VMAAAEENILRYLMEYPHTCERIQEMIPYTLFVNPLRQHIYQFILDAYAEKRTYTKADIQ 518

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            RL      EL + +  Q                 + +              L RQ  E 
Sbjct: 519 DRLSVEEEKELARIMVLQDVP--------------LDERVLNDYVKRFHLAGLQRQYAEH 564

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            K+ A  +  G+ +    L +I  E++ +I +
Sbjct: 565 SKRAAAFSRTGDPQVMKEL-AICKEINEKIRK 595


>gi|317049602|ref|YP_004117250.1| DNA primase [Pantoea sp. At-9b]
 gi|316951219|gb|ADU70694.1| DNA primase [Pantoea sp. At-9b]
          Length = 581

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 178/622 (28%), Positives = 285/622 (45%), Gaps = 53/622 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA   G+ +P    +   + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNFDRLEFVESIEELATQHGLEVPYEAGNGPSQMERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E    F+  SL+  + +    YL  RG+    I+ F +GYAP    +  +   Q+   
Sbjct: 119 LLEGLNTFYQQSLRQPQAQPAQQYLATRGLSQQVIDHFAIGYAPPGWDNALKRFGQQQDD 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            E ++EAG+L+  D    +YDRFR+R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RESLMEAGMLVSNDKG-RTYDRFRDRIMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 PIFHKGRQLYGLYEAQKNHPQPAR----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRSTENVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +T D +A L       I+ I  + 
Sbjct: 347 DTLVRKEGKAAFEARMEQAMPLSTFLFDSLLPQVDLSTRDGKARLSTLALPLISQIPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +        + ++       P +R              
Sbjct: 407 LRIYMRQELGNKLGILDDNQLEKLL----PKQADSGAAPTAPPLKRTTM----------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P         L  +         L+  L S   E       ++ +
Sbjct: 452 -----RVLVALLVQNPQFATMVP-ALEGLEQSKMAGLPLFVELVSRCSENPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                 F + L+ L     +  +     EA   D       +         L ++ E + 
Sbjct: 506 LYRGTNFSQTLETLATW--NHMIVDEEAEAVFQDSLASLYDS--------ALEQRLEAL- 554

Query: 600 KQIAQVTAKGEAEKTAILISIL 621
             IA+   +G +         L
Sbjct: 555 --IARDRTEGLSAAERREFWAL 574


>gi|269219498|ref|ZP_06163352.1| DNA primase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211077|gb|EEZ77417.1| DNA primase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 662

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/678 (23%), Positives = 270/678 (39%), Gaps = 68/678 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ I ++     I +++ QYV       ++        CPFHDEKTPSFH     G +
Sbjct: 5   IRREDIDEVRSRTRIEDVVSQYVQLRPDGVDSQ----KGLCPFHDEKTPSFHIRPHIGRW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119
           +CF C   GD +SF+  +   SF+E+V+ LA  AGV L   +    ++      +  LI 
Sbjct: 61  HCFGCGEGGDVISFVERIEHVSFVEAVEILARKAGVELRYENDGRRERGDSGATRQRLID 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              +A DF+   L + + +     LD+RG D+ AIE FK+GY+P+S   + + LR++GF+
Sbjct: 121 AHRIAVDFYMAQLASPQGEAGRRMLDQRGFDAAAIERFKVGYSPNSWDGVLKELRRRGFT 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSPE 238
           E +I  +GL   G+     YDRFR RL++PI S  G  I FG R L  +    KYLN+PE
Sbjct: 181 EREIAASGLASQGNRGQ--YDRFRGRLMWPIMSITGDPIGFGARKLSDEDNGPKYLNTPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K + LY    A   + +  R          I++VEGY DV++   AGV+  V++ 
Sbjct: 239 TAIYKKSQVLYGLDMAKRAISQQRR----------IVVVEGYTDVMAAQLAGVETAVATC 288

Query: 299 GTALTEYQLRLLWK-------------------LSPRIVLCFDGDDPGLRAAYKAIDLVL 339
           GTA     ++++ +                       I+  FDGD  G +AA KA     
Sbjct: 289 GTAFGSEHVKVVRRLIGDGADPAAGVILGSGAAYGGEIIFTFDGDAAGQKAALKAFQEDQ 348

Query: 340 CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399
                  +    +   G DP      YG  A  +++    PL +   +        N+ +
Sbjct: 349 AFAA---QTFVCVAPEGMDPCEVRMNYGDEAVREIVAARRPLFEFAIRSVLTGLPLNSAE 405

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR---- 455
            R          +  I+D+ LR  Y++ +   L              GR      R    
Sbjct: 406 GRTAGLRAAAPMVASIRDRVLRGEYTRQLAGWLGMDEGTVRRAVLSSGRRPASGRRMEGG 465

Query: 456 ----HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL-QEQYQELADIRY 510
               +   +   +R       +  +       E   L   +  P +    Q  EL    +
Sbjct: 466 QRRPNGGAQDGQERPAPVLAPRATVRDPVERVEREALGIYLQLPGLAGPAQMDELPSQTF 525

Query: 511 DNNELQKLWSFLFSDFVEQKYFLP-EEIHQR---LCERGFGELLKQLDRQVRDAGL---- 562
                +++   + +      Y     E+  +   L +         ++R + +A      
Sbjct: 526 TVPVHRRVHEAIRAAGGAASYDKRVAELSAKGVPLEKAEEAAAGWYVERVIENADDVVGR 585

Query: 563 ------WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                      E+    V +          R   ++RQ  ++  ++ +     +  + + 
Sbjct: 586 AVAQLAVETLPESRPDRVERYVWGIAVSLIRQG-ITRQIGDLRSRLQRTPP--DDPQYSA 642

Query: 617 LISILHEVHIQIHQIESQ 634
           L S L E+  Q    ++Q
Sbjct: 643 LFSRLIELEEQRRACDAQ 660


>gi|302869252|ref|YP_003837889.1| DNA primase [Micromonospora aurantiaca ATCC 27029]
 gi|302572111|gb|ADL48313.1| DNA primase [Micromonospora aurantiaca ATCC 27029]
          Length = 631

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 146/648 (22%), Positives = 250/648 (38%), Gaps = 44/648 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I+++I + V           G+    CPFHDEK+PSF+ + ++  
Sbjct: 12  RIRDEDIALVRERTAIADVISEVVTLKSAG----GGNLKGLCPFHDEKSPSFNVSPARNV 67

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           +YCF C V GD + FL      SF+ESV+RLAA AG+ L         P+   ++  +  
Sbjct: 68  FYCFGCGVGGDAIKFLMDAEHLSFVESVERLAARAGIQLRYVEDDRSTPRTRPQQGQRQR 127

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L+     A +F+   L  A  +    +L  RG D  A E +  G+APD    L +HLRQ+
Sbjct: 128 LVAAHAAAVEFYRAQLTTAGARPAREFLAGRGFDRAAAERYGCGFAPDGWDLLTKHLRQQ 187

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLN 235
           GF+ ++++  GL     +  +  DRFR RL++PIR   G VI FG R L   +   KYLN
Sbjct: 188 GFTHDELVIGGLSRPARSG-SLIDRFRRRLMWPIRDITGDVIGFGARKLFDDDDGPKYLN 246

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +PET ++ K   LY    A   + K  +          +++VEGY DV++   A V   V
Sbjct: 247 TPETPIYKKSHVLYGIDLAKREIAKQGK----------VVVVEGYTDVMACHLADVPTAV 296

Query: 296 SSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           ++ GTA     + +L +        +  I+  FDGD  G +AA +A +     +    R 
Sbjct: 297 ATCGTAFGGDHISVLRRVLFDSDERAGEIIFTFDGDAAGQKAALRAFEDDQRFVG---RT 353

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
              +     DP       G  A   L+    PLVD   +        +T D R E     
Sbjct: 354 FIAVSPDNMDPCELRLAKGDLAVRDLVARREPLVDFALRHVISRFDLDTVDGRVEAMRRA 413

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              +  IKD++ R  Y + +   L    +                        P      
Sbjct: 414 APLVAKIKDREKRPEYVRKLAGDLGMEIEPVQRAVLTAANGQPAPGTPAAPARPRPG--- 470

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                  +    S+ E   L   +  P +    +  +    Y +     + + + +    
Sbjct: 471 ----APSVDSPRSMVEREALKLALQEPVLAGPMFDAVEATDYQHPVHVAVRAAVAAAGGA 526

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                     +R+ +       + L   + +  +     +         Y        ++
Sbjct: 527 SGATGGAVWIERVRDACDDLAGQAL---IGELAVEPLRIDGEPDP---RYVSITMARLQW 580

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             ++ +  +++ +I +V      ++   L   L  +      +  Q A
Sbjct: 581 SSVTGRIRDLKSKIQRVNPVSNKDEYFALFGELLSLEQHARALREQAA 628


>gi|297580651|ref|ZP_06942577.1| DNA primase [Vibrio cholerae RC385]
 gi|297535067|gb|EFH73902.1| DNA primase [Vibrio cholerae RC385]
          Length = 609

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/633 (27%), Positives = 288/633 (45%), Gaps = 68/633 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 27  IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 81

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113
           +CF C   G+ + F+       F E+++ LA+  G+ +      P           K + 
Sbjct: 82  HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 141

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+   LK   +K    YL  RG+    ++ F +GY  D    +R + 
Sbjct: 142 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 201

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  SE+ ++ AG+LI+ DN    YDRFR R++FPIR  RG+VI FGGR ++   + KY
Sbjct: 202 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITDQGTPKY 259

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 260 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 309

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L+LL++ +  ++ C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 310 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 369

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK  FE+ +  + PL   L++   E    N  + + ++ L       
Sbjct: 370 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 429

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D  L+    + + +R     Q             KK  +  ++  P + + ++ +
Sbjct: 430 IDKIPDPFLQEVLEKLLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM 479

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  LI +P+  +      +        L   +S +     +  +
Sbjct: 480 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 525

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +   +     LL +L        +     E  +  + +   Q +         
Sbjct: 526 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 575

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            +Q E ++ +      +     +      L ++
Sbjct: 576 EKQIENLQAK------ERSVGLSTEEKRELQDL 602


>gi|16761984|ref|NP_457601.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29143471|ref|NP_806813.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213161044|ref|ZP_03346754.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213425629|ref|ZP_03358379.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213616353|ref|ZP_03372179.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
 gi|213646107|ref|ZP_03376160.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|289827082|ref|ZP_06545871.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|25298045|pir||AI0892 DNA primase [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504287|emb|CAD07735.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29139105|gb|AAO70673.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 581

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 173/631 (27%), Positives = 293/631 (46%), Gaps = 58/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    DF+  SL +   K    YL +RG+ +  I+ F +G+AP    +  +       +
Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  +++AG+L+  +   ++YDRFRNR++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  Y  +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   + +L++ +  ++ C+DGD  G  AA++A++  + ++  G +V F+ L  GEDP
Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         ++PD   +L       IN +    
Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDT 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    Q +  +L       +                     P+ +L ++++        
Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGVSRPAPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +         L   +     L  L+  L    + Q      ++
Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    +  I    + +  +L  +    LL  ++EE
Sbjct: 504 LELYRGTNDAATLEKL-------SMWDDIADKAI--AEKTFTDSLN-HMFDSLLQLRQEE 553

Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627
           +   IA+    G  +E+   L ++  E+  +
Sbjct: 554 L---IARDRTHGLSSEERRELWTLNQELARK 581


>gi|90580772|ref|ZP_01236575.1| DNA primase [Vibrio angustum S14]
 gi|90438040|gb|EAS63228.1| DNA primase [Vibrio angustum S14]
          Length = 585

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 162/607 (26%), Positives = 273/607 (44%), Gaps = 55/607 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DL+    I ++I   V   ++  N     + ACCPFH+EKTPSF  +  K F
Sbjct: 4   KIPRSFIDDLISRHDIVDVIDARVKLKKQGKN-----FGACCPFHNEKTPSFSVSQEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117
           Y+CF C V G+ L F+       F+++++ LA+  G+ +P  +         K   + + 
Sbjct: 59  YHCFGCGVHGNVLDFVMEFDRLDFVDAIEELASQLGLEVPRENDGNNTHRGPKAADKRNY 118

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             L+   + F+   L+    +    YL  RG+    ++ F +G+ PD    +R    +  
Sbjct: 119 YELMGQVSQFYQSQLRTKEGEIAIDYLKSRGLSGEIVKKFSIGFIPDQWDMVRSRFGRDN 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S++ ++  G+LI+ DN    YDRFR R++FPI   RG+VI FGGR L    + KYLNSP
Sbjct: 179 ESQKALVNTGMLIENDNGRR-YDRFRGRVMFPIHDRRGRVIGFGGRVL-GDGTPKYLNSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHKG+ LY  +  L   ++  +          I++VEGYMDV++L Q GV   V+S
Sbjct: 237 ETDIFHKGRELYGLYEVLQTHREPNK----------IMVVEGYMDVVALAQFGVDYAVAS 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGT+ T   ++ L++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L  GE
Sbjct: 287 LGTSTTGDHIQSLFRQTSTVVCCYDGDRAGRDAAWRAMEQALPYLTDGRQLKFMFLPDGE 346

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS IR  GK AFE+ + E+ PL + L+          + + +A+L       I+ +  
Sbjct: 347 DPDSCIRAEGKDAFEQRVDEATPLSEFLFNSLMRQVDTTSREGKAKLSTLAVPLIDKVPG 406

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             LR Y  + +   L    +  + +         K       K                 
Sbjct: 407 GTLRLYLRELLGKNLGLPDEAQLQQLISMHGKTSKPVGQVQIKRTPM------------- 453

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ--KLWSFLFSDFVEQKYFLPE 535
                    ++  LI HP  + +   E     ++N EL    L   +             
Sbjct: 454 -------REVIALLIQHPNFVTQL--EFDMSAFENIELSGLNLLLSIVDKCRSNPNISTG 504

Query: 536 EIHQRLCERGFGELLKQLDRQVRD-AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           ++ +          + +L   V   +     + +  +  + +   Q +          +Q
Sbjct: 505 QLLEHWRGTKNEATMARLAAWVLPLSKDEDNSLDVFLDAMDKIIDQCV---------KQQ 555

Query: 595 KEEIEKQ 601
            E+++ +
Sbjct: 556 IEQLQTK 562


>gi|254293485|ref|YP_003059508.1| DNA primase [Hirschia baltica ATCC 49814]
 gi|254042016|gb|ACT58811.1| DNA primase [Hirschia baltica ATCC 49814]
          Length = 645

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/643 (27%), Positives = 300/643 (46%), Gaps = 24/643 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   FI +L   +PIS  +G+ V   R   N     +    PF DE TPSF+ +D K 
Sbjct: 1   MRFSEAFIDELKDRLPISGYVGRKVKLVRSGKN-----FKGLSPFKDENTPSFYVDDDKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y CFS    GD +SF+    G SF E+V++L  +AG+ +P      +K+   +  L  L
Sbjct: 56  SYRCFSTQNSGDIISFVQETEGLSFQEAVEKLVQLAGMEMPTETKAEKKQVTKRKSLFEL 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +E A  F+   L+    ++   YL + RG+   A    ++GYAP+   +L +HL + G +
Sbjct: 116 MEAAVAFYEEQLREPVGEQAREYLSKSRGLGEGAWRRHRIGYAPEGWQTLHDHLIKMGAT 175

Query: 180 EEKIIEAGLLIDGDNSAT-SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE------SVK 232
            ++++E GL+    NS+   YD FR+R+IFPI    G+ IA GGR L  G         K
Sbjct: 176 AKELLEIGLVRPSKNSSKPPYDAFRHRIIFPILDPTGRPIALGGRALEPGHVLKEKGIPK 235

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS-SSFIILVEGYMDVLSLCQAGV 291
           Y+NS ET LFHK   +YN+  A + + K  R     +  +  +I+ EGYMDV+++ + G 
Sbjct: 236 YVNSSETPLFHKSSVIYNYGRARDAIYKLSRNASSADPFARGLIVTEGYMDVIAMAEHGF 295

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
              V+ +GTALTE QL++LW++ P  ++CFDGD+ G +AA +A+DL L  L PG  V   
Sbjct: 296 STAVAPMGTALTEEQLKMLWRVGPEPIMCFDGDEAGQKAAMRAVDLALPMLEPGKSVYVT 355

Query: 352 LLSRGEDPDSFIRCYGKT-AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           +L +G DPD  ++  G       L+  + PLV++LW RE      +TP+ RA  E  L  
Sbjct: 356 ILPQGMDPDDLLKTDGGEYGLRDLLRNARPLVELLWDRELNKEKLDTPERRAGFEARLDE 415

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ I ++++R  Y + ++DR  Q F+          R  +   ++              
Sbjct: 416 AVSAIANEQVRRAYERELKDRRYQYFRDQRQAKQTPFRKNEWGGKNSSNFRGKNIAQGPV 475

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
           +               +++  I+ P ++ E  + LA   + + ++  L +         +
Sbjct: 476 IKLADTRGLTGRTGLGMIVRAIDSPNLMDEAKEMLAMADFRDEDVLALRNAALDVQDFGE 535

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 I   L         + L R      L     +  I       ++ LA  +RF  
Sbjct: 536 KVDRSAIAAHL---------RSLGRTRSAKLLEEYPNQEPIDPSSTIGREWLAALERFPT 586

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++  K+E E +     +    E+     +    +  +   +++
Sbjct: 587 VAALKDEAESEKNAFASANGVEEHKAEWARRKRLVAERQALKA 629


>gi|92113103|ref|YP_573031.1| DNA primase [Chromohalobacter salexigens DSM 3043]
 gi|91796193|gb|ABE58332.1| DNA primase [Chromohalobacter salexigens DSM 3043]
          Length = 613

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 177/629 (28%), Positives = 291/629 (46%), Gaps = 32/629 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    +  ++G+ V   +   N     Y   CPFH EK+PSF  +  K FY
Sbjct: 5   IPQRFIDDLLARTDVVEIVGERVQLKKAGRN-----YSGLCPFHQEKSPSFTVSAEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIR 119
           +CF C V G+ L FL       F E+V++LA+  G+ +P     DP+ +++E+ + + + 
Sbjct: 60  HCFGCGVHGNALRFLMEFDHLRFPEAVEQLASRLGLDVPREGADDPQAQQRERRREEAVN 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E++  FF   L  +       YL+ RG+ +  +  F +G+APD   +L+ HL ++G S
Sbjct: 120 LLELSASFFRERLAMSEGGDARDYLERRGLSADIVREFGIGFAPDKWEALKRHLTERGIS 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +   IE GLL+  ++S  SYDRFRNR++FPIR  +G+ IAFGGR L      KYLNSPET
Sbjct: 180 DAVQIEYGLLVHREDSGRSYDRFRNRVMFPIRDWKGRTIAFGGRVL-GDAKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G++N  ++LG
Sbjct: 239 PVFHKGRELYGLYEARQANARLER----------MLVVEGYMDVVALAQFGIRNACATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+L+E  L+ L++L   +V CFDGD  G +AA +A++ VL  +I G +V F+ L  G+DP
Sbjct: 289 TSLSEDHLQRLFRLVGEVVFCFDGDRAGRQAARRALETVLPSMIDGRQVRFLFLPEGDDP 348

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS +R  G  AFE  ++ + PL + L+ +  E R     ++R      +   +  + +  
Sbjct: 349 DSLVRREGAEAFENRVLCAAPLSEFLFDQAAEGRDLQRIEDRERFATAVLRALERLPEGV 408

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYG-RYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
           L+    + +  R       +    +         +    +     +   ++   K     
Sbjct: 409 LKSLLLRELSQRTGVEQANFQALLARADTSQAPHDEGADEASSAPEDAGETPARKAGARD 468

Query: 479 KPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                   LL  L++ PA++    + L        +     L   +        Y   + 
Sbjct: 469 GALGLVGRLLHLLVHEPALVSRLPESLDWCPDGVGD---GALCHEVVRLIRAGGYRNAQV 525

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +         GE L  L R+                   +G    L      R    + +
Sbjct: 526 LLAHFHGTPEGERLAWLARR------ELLMPREARGAEVEGLVDGLRRRHSQRSPQEEYD 579

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVH 625
            +  +  Q       E+   L  +L E+ 
Sbjct: 580 ALLAR-TQAGECLSREERQRLNELLMELK 607


>gi|283797718|ref|ZP_06346871.1| DNA primase [Clostridium sp. M62/1]
 gi|291074614|gb|EFE11978.1| DNA primase [Clostridium sp. M62/1]
          Length = 598

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/636 (24%), Positives = 267/636 (41%), Gaps = 45/636 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP + I+++     I ++I  YV   ++ +N     Y+  CPFH EK+PSF  + SK 
Sbjct: 1   MYYPEEVIEEVRTRSDIVDIISGYVKLQKKGSN-----YFGLCPFHHEKSPSFSVSQSKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            Y+CF C V G+  +F+      SF E+V+ LA  +GV LP      +   +  ++  L+
Sbjct: 56  MYHCFGCGVSGNVFTFVMEYENYSFREAVELLAERSGVKLPKVEYSREARAQADLRAALL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A ++F++ LK  + +  + YL  R +    I  F LG+A  +   L   L+ KG+
Sbjct: 116 EINKLAANYFYYQLKQPQGEAGYRYLTGRELTDQTIRHFGLGFANKTSDDLYRFLKSKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            +  + E GL+        S D+F NR++FPI     +VI FGGR +      KYLNSPE
Sbjct: 176 DDSLLKETGLVTI--EERGSRDKFWNRVMFPIMDVNNRVIGFGGRVM-GDGEPKYLNSPE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF K +NLY    A              +   +++L EGYMDV+++ QAG  N V+SL
Sbjct: 233 TKLFDKSRNLYGLNFAR------------LSREKYMLLCEGYMDVIAMHQAGFTNAVASL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T     LL + + +++L +D D  G++AA +AI +       G  V  + +   +D
Sbjct: 281 GTAFTAQHAALLKRYTDQVILTYDSDGAGVKAALRAIPI---LKAVGMSVKVLNMKPCKD 337

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AF + I E+            +  S   P+++          +    + 
Sbjct: 338 PDEFIKSLGADAFRQRISEARNSFLFEIDTIRQKYSMEDPEQKTAFYNETARKLLEFSEA 397

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS-----QRLMQSSLVK 473
             R  Y QA+       ++      +  G  +                   +  +    K
Sbjct: 398 LERDNYIQAVSREYFISYEDLKRLVNSLGSRYGSALPGTRADREGVGETYAQKPREIQKK 457

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
               +     E  LL  LI  P + ++    +    +     ++    +F    + +   
Sbjct: 458 RDREEGIRQSERLLLTWLIEEPRLFEKIRGIIGPEDFVKPLYRRAAEMVFEGHEKGEVNP 517

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              ++  + + G    +  L     +  L +   +    D                +L  
Sbjct: 518 AAILNHFIDDEGNYREVAALFNASLNDSLSNEEQKKAFAD---------------TVLKV 562

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +K  ++ Q    +   E ++     + L  +HI + 
Sbjct: 563 KKSSLDYQSRNASDLNELQRIIKEQAELANLHISLE 598


>gi|313837243|gb|EFS74957.1| DNA primase [Propionibacterium acnes HL037PA2]
 gi|314927737|gb|EFS91568.1| DNA primase [Propionibacterium acnes HL044PA1]
 gi|314972015|gb|EFT16113.1| DNA primase [Propionibacterium acnes HL037PA3]
 gi|328907207|gb|EGG26973.1| DNA primase [Propionibacterium sp. P08]
          Length = 617

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 144/635 (22%), Positives = 253/635 (39%), Gaps = 45/635 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I  ++G+YV       NA  G     CPFHDEKTPSF    S+G 
Sbjct: 4   RINEEDIALVRERARIDEVVGEYVTL----RNAGGGSLKGLCPFHDEKTPSFQVTPSRGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120
           +YCF C   GD +SF+  +   +F+E+VQRLA   GV L ++D      E  ++  ++  
Sbjct: 60  FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKTGVQLRIIDDGRPGLEPGLRMQILAA 119

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A  FF   +     +    ++  RG    A   F +GYAP   + LR+HL  KGF+ 
Sbjct: 120 NEAAAKFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRGGHVLRDHLVAKGFTP 179

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           + +IE+GL+          D F+ R+++PI+ S   V+ FG R +   +    KY+N+PE
Sbjct: 180 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K   LY    A   + K           S  ++VEGY DV++   +GV   V++ 
Sbjct: 235 TPVYKKSHVLYGLDMARANIGKK----------SQAVIVEGYTDVMAAHLSGVDTAVAAC 284

Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  +   RL+ +L          ++  FDGD  G +AA K            ++    
Sbjct: 285 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 341

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP   +   G  A  +L+   +PL   + +        +  D R          
Sbjct: 342 VEPTGLDPCDLLMQRGPEAVRELVARRVPLYRYVMENTVNQFDLDRADGRVAAIRAAAPL 401

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  I+DQ L   Y + +   +         E S   R  +   +      P  +     +
Sbjct: 402 VTSIRDQSLVDGYVRELSQVVGTDIDLVRREVSRARRQHRSEPQLTVVPPPEPQ-QSPGI 460

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                +      E   L   + HP +  E++ ++      +   Q ++  + +       
Sbjct: 461 PWPDPADVSLSVERGFLKLALQHPGLFDEKWDQVEVEDLRHPAYQAVFEAVLAV-----P 515

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              +   +++ E      +KQL+       +          +  + Y +A A   R   +
Sbjct: 516 RGQDRWAEKVGEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 568

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           +     ++ ++ +     + +    + S L  +  
Sbjct: 569 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLMTLEA 603


>gi|152971990|ref|YP_001337099.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956839|gb|ABR78869.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 581

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 180/629 (28%), Positives = 297/629 (47%), Gaps = 54/629 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFISDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P    +   + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPYEAGNRPSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL          YL +RG+ S  I  F +GYAP    ++ +       +
Sbjct: 119 LLDGLNAFYQQSLMQPAADPARQYLAKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L      KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNPEPPR----------LLVVEGYMDVVALAQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++++  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         +TPD RA+L       I  +  + 
Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSTPDGRAQLSTLALPLITQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +                     P+ +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDAQLERL-------MPKQAENGAPRPAPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +                 L  L+S L    + Q      ++ +
Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLEGLDSRKMPGL-SLFSELVKSCLAQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           +         L++L        +W    + +I    Q +  +L  +    LL  ++EE+ 
Sbjct: 506 QYRGTKEAATLEKL-------SMWDDIADKDI--AEQTFTDSLN-HMFDSLLELRQEEL- 554

Query: 600 KQIAQVTAKG-EAEKTAILISILHEVHIQ 627
             IA+    G  +E+   L +I  E+  +
Sbjct: 555 --IARDRTHGLSSEERRELWTISQELAKK 581


>gi|227080701|ref|YP_002809252.1| DNA primase [Vibrio cholerae M66-2]
 gi|255744254|ref|ZP_05418207.1| DNA primase [Vibrio cholera CIRS 101]
 gi|227008589|gb|ACP04801.1| DNA primase [Vibrio cholerae M66-2]
 gi|227012344|gb|ACP08554.1| DNA primase [Vibrio cholerae O395]
 gi|255738194|gb|EET93586.1| DNA primase [Vibrio cholera CIRS 101]
          Length = 587

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/633 (27%), Positives = 289/633 (45%), Gaps = 68/633 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113
           +CF C   G+ + F+       F E+++ LA+  G+ +      P           K + 
Sbjct: 60  HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 119

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+   LK   +K    YL  RG+    ++ F +GY  D    +R + 
Sbjct: 120 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 179

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  SE+ ++ AG+LI+ DN    YDRFR R++FPIR  RG+VI FGGR +++  + KY
Sbjct: 180 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L+LL++ +  ++ C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 288 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK  FE+ +  + PL   L++   E    N  + + ++ L       
Sbjct: 348 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D  L+    + + +R     Q             KK  +  ++  P + + ++ +
Sbjct: 408 IDKIPDPFLQEILEKLLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM 457

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  LI +P+  +      +        L   +S +     +  +
Sbjct: 458 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 503

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +   +     LL +L        +     E  +  + +   Q +         
Sbjct: 504 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 553

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            +Q E ++ +      +     +      L ++
Sbjct: 554 EKQIENLQAK------ERSVGLSTEEKRELQDL 580


>gi|254477615|ref|ZP_05091001.1| DNA primase [Ruegeria sp. R11]
 gi|214031858|gb|EEB72693.1| DNA primase [Ruegeria sp. R11]
          Length = 732

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 178/442 (40%), Positives = 270/442 (61%), Gaps = 10/442 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   + ++ ++G+ V WD+RK+N  KGD W+ CPFH EKT SFH +D KG
Sbjct: 1   MSLPPGFLDELRTRVSLTQVVGRKVMWDQRKSNQGKGDMWSPCPFHHEKTASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD L F+       F+E+V+ LA  AG+ +P  DP+ ++K+  ++ L  +
Sbjct: 61  FYYCFGCHAKGDALKFIQETENVGFMEAVEILAQEAGMEMPARDPRAQQKQDHRSQLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF   LK  + +    YL  RG+   A + +++G+APD   +L + LR KG  E
Sbjct: 121 MEQAVRFFRMQLKTRQAEEARSYLARRGLSPEAQDRWEIGFAPDGWQNLWDALRGKGVPE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E I+ AGL    +     YD FRNR++FPIR +RG+ IAFGGR +   ++ KYLNSPET 
Sbjct: 181 ELILGAGLAKPSNKGGKPYDTFRNRIMFPIRDARGRAIAFGGRAMDPNDNAKYLNSPETA 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG++LYN   A     K          +  +++ EGYMDV++L + G    V+ LGT
Sbjct: 241 LFDKGRSLYNHGPARTASGK----------TGQLLVAEGYMDVIALSEGGFAASVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE+QL +LW+++   ++  DGD  GLRAA + IDL L  L  G  + F L+  G+DPD
Sbjct: 291 AITEHQLHMLWRIADEPIIALDGDKAGLRAAMRLIDLALPLLEAGKSLRFALMPEGKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G  A + ++ +++P+V +LW+RETE + F++P+ +A L+  L++ I  I+D  +
Sbjct: 351 DLIRSEGPEAVQAVLDQAMPMVKLLWQRETEGKVFDSPERKAALDKALRDKIRLIRDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITE 442
           R +Y + I+D   +LF+     
Sbjct: 411 RRHYGEDIQDMRWELFRGGRPR 432



 Score = 68.0 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 71/218 (32%), Gaps = 21/218 (9%)

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
              GR   +         P Q    S L  G       +REA +L T+I  PA++ +   
Sbjct: 518 RDGGRPPWRGKN--APPTPLQTTRNSLLAGGSEESLVRVREAVILATVITTPAVIAQFEA 575

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
            L  +    ++   L   +    ++     P+ + + +        L+ L      A + 
Sbjct: 576 NLERMACVGSDHALLRDLVLRHGIDA----PDRLKEEIDAAAGAHALENLFALRHVAIMP 631

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------------AQVTAKGE 610
                 ++        +  A  +  R L  +  E E+ +                 A+ +
Sbjct: 632 CLRRPGDVETASLTLAEEFAKLEASRGLDAELAEAEEDLSGLADEAVTWRLGQAAEARNK 691

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           A ++       ++V     ++  +E   + FG +  R+
Sbjct: 692 AVRSENEDRAQYDVGENGARLNREER--DAFGALLERI 727


>gi|218133124|ref|ZP_03461928.1| hypothetical protein BACPEC_00986 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991997|gb|EEC58001.1| hypothetical protein BACPEC_00986 [Bacteroides pectinophilus ATCC
           43243]
          Length = 584

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/628 (24%), Positives = 262/628 (41%), Gaps = 51/628 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I+++     I ++I  YV   +  +N     Y+  CPFH+EK+ SF  + SK 
Sbjct: 1   MRYSEELIEEVRSRNDIVDVISGYVKLKKSGSN-----YFGLCPFHNEKSGSFSVSPSKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+ ++F+      +F+E+V+ LA  AG+ LP     P+  K   I++ L+
Sbjct: 56  MYYCFGCGAGGNVITFIMEYENYTFMEAVRMLAERAGIELPQMEETPEERKSRDIRSQLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A  ++ H L+         YL +R +    I+ F LGY+      L  +++ KG+
Sbjct: 116 EINKLAAVYYFHQLRGQNGSTAMNYLKKRELGDETIQRFGLGYSSMYSDDLYRYIKSKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            ++ + E+GL           D+F NR++FPI     +VI FGGR +      KYLNSPE
Sbjct: 176 KDDILKESGL--FTYGDGKVTDKFWNRVMFPIMDMNNRVIGFGGRVM-GDGKPKYLNSPE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF K +NLY    A              +    II+ EGYMDV+SL QAG    V+SL
Sbjct: 233 TKLFDKSRNLYGLNIAR------------TSRKPNIIICEGYMDVISLHQAGFNQAVASL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT  Q  L+ + + ++++ +D D  G++AA +AI +       G     + +   +D
Sbjct: 281 GTALTSGQASLMKRYTDQVLITYDSDGAGVKAALRAIPI---LKEAGLTTKVINMKPYKD 337

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AF++ I ++            +N     PD +      +   I   +++
Sbjct: 338 PDEFIKGLGAEAFQERIDKAQNSFMYEISAMEQNYDLTDPDSKTRFFNEVAGRIVGFEEE 397

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+ D+              YG          D +  S    +          
Sbjct: 398 LERNNYIEAVADKYMVSMDALKAMVGNYGNRVGIVKDRHDSRRTSSSHKEKE-------D 450

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             S  +  LL  L+   ++  +    L+   +       +   L+    +     P  I 
Sbjct: 451 GISQAQKILLTWLVQDMSLYPKVAAYLSPDDFIEEPFHDVAVRLYEQL-DNGQINPAAII 509

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               +    + +  +              E +  +  +   Q +   K+  L      +I
Sbjct: 510 STFDDGETQKKVASIFN-------RELAEELSDSERERALNQTVKKIKKNSL------DI 556

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHI 626
           + +     +  +  +   +I    E+  
Sbjct: 557 KSR-----SVTDVAQLQNIIKEQKEIQN 579


>gi|70732950|ref|YP_262721.1| DNA primase [Pseudomonas fluorescens Pf-5]
 gi|68347249|gb|AAY94855.1| DNA primase [Pseudomonas fluorescens Pf-5]
          Length = 657

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 175/666 (26%), Positives = 292/666 (43%), Gaps = 78/666 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   +   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRLQIKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ---TDLIR 119
           YCF C   G+ L F+       F ++V+ LA  AG+ +P  +    +++  Q   + L  
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEELAKAAGMEIPREESSRGQRKPRQPTDSPLYP 119

Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+  A D++  +LK+    K    YL  RG+       F LG+AP    +L +HL     
Sbjct: 120 LLTAAADYYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTL 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            ++ +I+AGLLI+   +   YDRFR+R++FPIR +RG++IAFGGR L   +  KYLNSPE
Sbjct: 180 QQKAMIDAGLLIENAETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVL-GDDKPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG+ LY  F A    +          +   II+VEGYMDV++L Q G++N V++L
Sbjct: 239 TPVFHKGQELYGLFEARKNNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATL 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +E  L+ L+++ P ++ CFDGD  G +AA++A++  L  L  G R  F+ L  GED
Sbjct: 289 GTATSEEHLKRLFRIVPNVLFCFDGDQAGRKAAWRALEATLTCLQDGRRARFLFLPEGED 348

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD+ +R  G  AF   +   + PL D  +++  +     + + +A L       I  I  
Sbjct: 349 PDTLVRSEGTDAFRARINQHAQPLADYFFQQLIDEADPRSLEGKAHLATLAAPLIEKIPG 408

Query: 418 QKLRYYYSQAIRDRLQQLFQKYIT------------------------------------ 441
             LR    Q + +      +                                        
Sbjct: 409 ANLRTLMRQRLSEITGLTNETVNQLAHSAPPEAPPVYDAGIDYDAMPDYADYHEPHQEAY 468

Query: 442 -------EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
                       G    +N          ++  +      ++         + L TL++H
Sbjct: 469 APQQEWTPKKNAGGKKWENKPWDKNGKGKRQGDRDQPRGPRIPAAVEPPTLSALRTLLHH 528

Query: 495 PAILQEQYQELADIRYDNNE--LQKLWSFLFSDFVEQKYF-LPEEIHQRLCERGFGELLK 551
           P + ++         + +++    +L   L     +        ++  R      G LL 
Sbjct: 529 PQLAEKVEDA---GHFADDDNTNTQLLVALIEAVQKNPKLRSIHQLMARWHGTQQGHLLT 585

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            L  +      W    +            +L+  +R R+L +     + + ++++++ + 
Sbjct: 586 ALAEKE-----WLIDGDNLEQQFFDTIN-SLSARQRERVLEQLLR--KSRQSELSSEEKK 637

Query: 612 EKTAIL 617
           +   +L
Sbjct: 638 QLVELL 643


>gi|15642769|ref|NP_230169.1| DNA primase [Vibrio cholerae O1 biovar El Tor str. N16961]
          Length = 587

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 171/633 (27%), Positives = 288/633 (45%), Gaps = 68/633 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113
           +CF C   G+ + F+       F E+++ LA+  G+ +      P           K + 
Sbjct: 60  HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 119

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+   LK   +K    YL  RG+    ++ F +GY  D    +R + 
Sbjct: 120 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 179

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  SE+ ++ A +LI+ DN    YDRFR R++FPIR  RG+VI FGGR +++  + KY
Sbjct: 180 GQQRSSEDMLVTAVMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L+LL++ +  ++ C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 288 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK  FE+ +  + PL   L++   E    N  + + ++ L       
Sbjct: 348 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D  L+    + + +R     Q             KK  +  ++  P + + ++ +
Sbjct: 408 IDKIPDPFLQEILEKLLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM 457

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  LI +P+  +      +        L   +S +     +  +
Sbjct: 458 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 503

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +   +     LL +L        +     E  +  + +   Q +         
Sbjct: 504 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 553

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            +Q E ++ +      +     +      L ++
Sbjct: 554 EKQIENLQAK------ERSVGLSTEEKRELQDL 580


>gi|289642670|ref|ZP_06474810.1| DNA primase [Frankia symbiont of Datisca glomerata]
 gi|289507500|gb|EFD28459.1| DNA primase [Frankia symbiont of Datisca glomerata]
          Length = 645

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/657 (23%), Positives = 260/657 (39%), Gaps = 46/657 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 +  +    PI+++IG YV      +    G     CPFHDEKTPSF+     G 
Sbjct: 4   RIRDADVAAVRDRSPIADIIGDYVQLRPVGS----GQLRGLCPFHDEKTPSFNVRPQVGA 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119
           Y+CF C V GD ++F+ A+ G SF E+V+RLA  AG+ L      +  +     +  L+ 
Sbjct: 60  YHCFGCGVGGDVIAFVRAIDGLSFPEAVERLARRAGIALTYEGGGVTSRAVTSQRQRLLD 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A +F+   L  A       +L  RG D  A   F +GYAP    +L  HL  + F+
Sbjct: 120 AHRAAAEFYAERLAGAEAGDGRAFLAARGFDQEAAARFGVGYAPAGWDTLTRHLMGRHFT 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
             +++  GL     +  +  DRF  RL++PI    G V+ FG R L+  +   KYLN+PE
Sbjct: 180 AAELVLGGLAKQS-SRGSLIDRFHRRLVWPICDLAGDVVGFGARRLAADDPGPKYLNTPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF K   LY    A   + +             +++VEGY DV++   AGV   V+S 
Sbjct: 239 TPLFKKANLLYGADLARREIARRY----------QVVVVEGYTDVMACHLAGVPTAVASC 288

Query: 299 GTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA     + +L +           +V  FDGD+ G +AA +A +     +    +    
Sbjct: 289 GTAFGSEHVTVLRRLLMDQSEHRGEVVFTFDGDEAGRKAAIRAFEFEERFVT---QTFVA 345

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP       G  A   L+   LPLV+   + +      +T + R          
Sbjct: 346 IEPSGLDPCDLRVQRGDVAVRDLVASRLPLVEFAIRGKLAGFDLDTTEGRLAAIDAAAPL 405

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           IN +KD+ LR+ Y+  + + L  L ++++       R            GP+      + 
Sbjct: 406 INKLKDRGLRHRYAVNLDNWLGFLDEEFVVRRVAEHRPRGAAGGTASLDGPAHGQGDHAA 465

Query: 472 VKGKLSKKPSL--------------REAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
             G+   +  L               E  +L   + +P +    +  L+   +   E + 
Sbjct: 466 RGGRTGGRAELPRRHDAVADDTVVAVEREVLKVALQYPGLAGPVFDTLSPELFTVQEHRA 525

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQ 576
           +   + +              Q   +         +L R V +  + +   +    DV  
Sbjct: 526 VREVIAAVGGVCAGLPAAGDVQTWVKTVVEAAGQDELRRFVIELAVEAVFCDH---DVDD 582

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            Y        +   ++R+  +++ ++ ++    +AE        L  +     Q+  
Sbjct: 583 RYVDEQMSRVQELQVTRRIADLKSRVQRLNPVTDAETFRRAYGELIALEQHKRQLRE 639


>gi|56415150|ref|YP_152225.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|168819724|ref|ZP_02831724.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|197364080|ref|YP_002143717.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
 gi|56129407|gb|AAV78913.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|197095557|emb|CAR61122.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
 gi|205343289|gb|EDZ30053.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320087664|emb|CBY97428.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 581

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 174/631 (27%), Positives = 294/631 (46%), Gaps = 58/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    DF+  SL +   K    YL +RG+ +  I+ F +G+AP    +  +       +
Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  +++AG+L+  +   ++YDRFRNR++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  Y  +  R          +++VEGYMDV++L Q  +  VV+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYVVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   + +L++ +  ++ C+DGD  G  AA++A++  + ++  G +V F+ L  GEDP
Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         ++PD   +L       IN +    
Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDA 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    Q +  +L       +                     P+ +L ++++        
Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGVSRPAPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +         L   +     L  L+  L    + Q      ++
Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    +  I    + +  +L  +    LL  ++EE
Sbjct: 504 LELYRGTNDAATLEKL-------SMWDDIADKAI--AEKTFTDSLN-HMFDSLLQLRQEE 553

Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627
           +   IA+    G  +E+   L ++  E+  +
Sbjct: 554 L---IARDRTHGLSSEERRELWTLNQELARK 581


>gi|118469474|ref|YP_888754.1| DNA primase [Mycobacterium smegmatis str. MC2 155]
 gi|9910813|sp|O52200|PRIM_MYCS2 RecName: Full=DNA primase
 gi|2739100|gb|AAB96635.1| primase [Mycobacterium smegmatis str. MC2 155]
 gi|118170761|gb|ABK71657.1| DNA primase [Mycobacterium smegmatis str. MC2 155]
          Length = 636

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 142/646 (21%), Positives = 256/646 (39%), Gaps = 37/646 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +   + I +++G YV   R             CPFHDEKTPSFH   + G 
Sbjct: 7   RIPDRDIAAIREKVRIEDVVGDYVQLRRAGA----DSLKGLCPFHDEKTPSFHVRPNHGH 62

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118
           ++CF C   GD  +F+  +   SF+E+V+ LA   G  +         +++    ++ L+
Sbjct: 63  FHCFGCGEGGDVYAFIQKIEHVSFVEAVELLADKVGYTVTYTGSSTTNVQRDRGSRSRLL 122

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
                A +F+  +L++        YL ER  D+ A   F  GYAP     L +HL +KGF
Sbjct: 123 AANAAAAEFYAEALQSEEAAPARQYLTERNFDAAAAAKFGCGYAPSGWDKLTKHLLRKGF 182

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK--YLNS 236
             +++  AGL  +        DRF  RL++PIR S G+ I FG R L   +  +  Y+N+
Sbjct: 183 EFKELEAAGLSRE--GKRGPMDRFHRRLLWPIRVSSGETIGFGARRLFDDDPNQAKYVNT 240

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET+L+ K + L+    A   + K              ++VEGY DV+++  AGV   V+
Sbjct: 241 PETVLYKKSQVLFGLDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVA 290

Query: 297 SLGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
           S GTA  E  L +L +L          ++  FDGDD G  AA KA +          +  
Sbjct: 291 SCGTAFGEQHLSMLRRLMMDDNFFRGELIYVFDGDDAGRAAAVKAFEGEQNLSG---QSF 347

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
             + + G DP       G  A   L+    PL + + +        ++ + R        
Sbjct: 348 VAVAADGMDPCDLRLRSGDGALRDLVARRTPLFEFVIRSALAEHDLDSAEGRVAALRRCV 407

Query: 410 NCINHIKDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
             +  IKD  LR  Y++ +   +      + I       +   +   +R  +  + R   
Sbjct: 408 PMLARIKDPTLRDEYARQLAGWVGWDNVAQVIGRVREEAKGGGRKDNNRRGQETAARPKP 467

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
             + +   +      +   L   + +PA+    +  L    + +     + + + +    
Sbjct: 468 PPVQRPDPTDPTLWPQREALKAGLQYPALAGPVFDTLTVESFTHPGYGAVRTAMEAAGGT 527

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                  +  + + E+        L  ++    +     E         Y  ++    + 
Sbjct: 528 SAGITGAQWIETVREQTTSPAAANLVNELSVETINVEDDEKLP-----RYISSVLARLQE 582

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             + RQ  E++ ++ +++   + ++   L   L  +      +  Q
Sbjct: 583 VWVGRQIAEVKSKLQRMSPVEQGDEYHALFGDLVAMESYRRSLLEQ 628


>gi|229031942|ref|ZP_04187929.1| DNA primase [Bacillus cereus AH1271]
 gi|228729406|gb|EEL80396.1| DNA primase [Bacillus cereus AH1271]
          Length = 598

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/630 (25%), Positives = 274/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL +RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLQRGITKEMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++  P +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E           Q      R      +K E
Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKTE 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  +I Q+      E     ++ L     +
Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|121591709|ref|ZP_01678934.1| DNA primase [Vibrio cholerae 2740-80]
 gi|121728935|ref|ZP_01681941.1| DNA primase [Vibrio cholerae V52]
 gi|147674914|ref|YP_001216018.1| DNA primase [Vibrio cholerae O395]
 gi|254850757|ref|ZP_05240107.1| DNA primase [Vibrio cholerae MO10]
 gi|298500979|ref|ZP_07010780.1| DNA primase [Vibrio cholerae MAK 757]
 gi|121546431|gb|EAX56666.1| DNA primase [Vibrio cholerae 2740-80]
 gi|121628783|gb|EAX61247.1| DNA primase [Vibrio cholerae V52]
 gi|146316797|gb|ABQ21336.1| DNA primase [Vibrio cholerae O395]
 gi|254846462|gb|EET24876.1| DNA primase [Vibrio cholerae MO10]
 gi|297540227|gb|EFH76287.1| DNA primase [Vibrio cholerae MAK 757]
          Length = 609

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/633 (27%), Positives = 289/633 (45%), Gaps = 68/633 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 27  IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 81

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113
           +CF C   G+ + F+       F E+++ LA+  G+ +      P           K + 
Sbjct: 82  HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 141

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+   LK   +K    YL  RG+    ++ F +GY  D    +R + 
Sbjct: 142 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 201

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  SE+ ++ AG+LI+ DN    YDRFR R++FPIR  RG+VI FGGR +++  + KY
Sbjct: 202 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 259

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 260 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 309

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L+LL++ +  ++ C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 310 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 369

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK  FE+ +  + PL   L++   E    N  + + ++ L       
Sbjct: 370 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 429

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D  L+    + + +R     Q             KK  +  ++  P + + ++ +
Sbjct: 430 IDKIPDPFLQEILEKLLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM 479

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  LI +P+  +      +        L   +S +     +  +
Sbjct: 480 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 525

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +   +     LL +L        +     E  +  + +   Q +         
Sbjct: 526 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 575

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            +Q E ++ +      +     +      L ++
Sbjct: 576 EKQIENLQAK------ERSVGLSTEEKRELQDL 602


>gi|194446779|ref|YP_002042477.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194405442|gb|ACF65664.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 581

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 173/631 (27%), Positives = 292/631 (46%), Gaps = 58/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    DF+  SL +   K    YL +RG+ +  I+ F +G+AP    +  +       +
Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  +++AG+L+  +   ++YDRFRNR++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  Y  +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   + +L++ +  ++ C+DGD  G  AA++A++  + ++  G +V F+ L  GEDP
Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         ++PD   +L       IN +    
Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDA 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    Q +  +L       +                     P+ +L ++++        
Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGVSRPAPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +         L   +     L  L+  L    + Q      ++
Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    +  I    + +  +L  +    LL  ++EE
Sbjct: 504 LELYRGTNDAATLEKL-------SMWDDIADKAI--AEKTFTDSLN-HMFDSLLQLRQEE 553

Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627
           +   IA+    G  +E+   L  +  E+  +
Sbjct: 554 L---IARDRTHGLSSEERRELWMLNQELARK 581


>gi|238918479|ref|YP_002931993.1| DNA primase [Edwardsiella ictaluri 93-146]
 gi|238868047|gb|ACR67758.1| DNA primase, putative [Edwardsiella ictaluri 93-146]
          Length = 599

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 177/625 (28%), Positives = 287/625 (45%), Gaps = 55/625 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I  L+   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 21  RIPRVFINDLLARTDIVELVDARVKLKKQGKN-----YHACCPFHSEKTPSFTVNADKQF 75

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA +AG+ +P        + +   + +L +
Sbjct: 76  YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATMAGLEVPYESGSGPSQMERHQRQNLYQ 135

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    ++  SL+     +   YL  RG+    ++ F +GYAP    +  +   +    
Sbjct: 136 LMDGLCGYYQQSLRQPGATQAQQYLTGRGMSQAIMDSFAIGYAPQGWDNALKRFGRDAGG 195

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  + +  SYDRFR+R++ PIR  RG+VIAFGGR L  G + KYLNSPET
Sbjct: 196 RTALNDAGMLV-NNENGRSYDRFRDRIMIPIRDKRGRVIAFGGRVLGNG-TPKYLNSPET 253

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ L+  + AL +  +  R          +++VEGYMDV++L Q GV   V+SLG
Sbjct: 254 EIFHKGRQLFGLYEALQHAAQPER----------LLVVEGYMDVIALAQYGVNYAVASLG 303

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  +V C+DGD+ G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 304 TSTTAEHIQLLFRHTDSVVCCYDGDNAGREAAWRALETALPYLSDGRQLKFMFLPEGEDP 363

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ IR  G  AFE+ + ++ PL   L+         +TPD R +L       I  +  + 
Sbjct: 364 DTLIRKEGAEAFERRMNDAHPLSTFLFDSLLPQVDLSTPDGRTKLSALALPLIGQVPGET 423

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q++  +L  L    + +         KN +    K  +                
Sbjct: 424 LRLYLRQSLGQKLGILDDSQLEKLLPRRSEAVKNYQPPRLKPTTM--------------- 468

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK-LWSFLFSDFVEQKYFLPEEIH 538
                  L+  L+ +PA+  E    L  +   +      L+  L    + Q      ++ 
Sbjct: 469 -----RILIALLVQNPALAAEVP-TLDGLH-QHPLPGLPLFIELVETCLAQPGLTTGQLL 521

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           +   +  +   L+ L        +     E  +  +   Y   L             + +
Sbjct: 522 ELYRDNKYASQLETLATW-NHMIIEPMVLETFVDTLGSLYDAVLE------------QRL 568

Query: 599 EKQIAQVTAKGEAEKTAILISILHE 623
           E+ IA+    G        +  L+E
Sbjct: 569 EQLIARARTDGLTPAEREEVRSLNE 593


>gi|30264363|ref|NP_846740.1| DNA primase [Bacillus anthracis str. Ames]
 gi|47529812|ref|YP_021161.1| DNA primase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187191|ref|YP_030443.1| DNA primase [Bacillus anthracis str. Sterne]
 gi|229603180|ref|YP_002868582.1| DNA primase [Bacillus anthracis str. A0248]
 gi|254684051|ref|ZP_05147911.1| DNA primase [Bacillus anthracis str. CNEVA-9066]
 gi|254721885|ref|ZP_05183674.1| DNA primase [Bacillus anthracis str. A1055]
 gi|254736400|ref|ZP_05194106.1| DNA primase [Bacillus anthracis str. Western North America USA6153]
 gi|254750875|ref|ZP_05202914.1| DNA primase [Bacillus anthracis str. Vollum]
 gi|254757798|ref|ZP_05209825.1| DNA primase [Bacillus anthracis str. Australia 94]
 gi|30259021|gb|AAP28226.1| DNA primase [Bacillus anthracis str. Ames]
 gi|47504960|gb|AAT33636.1| DNA primase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181118|gb|AAT56494.1| DNA primase [Bacillus anthracis str. Sterne]
 gi|229267588|gb|ACQ49225.1| DNA primase [Bacillus anthracis str. A0248]
          Length = 598

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/630 (25%), Positives = 276/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL +RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++  P +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E     ++   +       R      +K E
Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEEVLQSHLET-----LRRHQEKLEKME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  +I Q+      E     ++ L     +
Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|321312004|ref|YP_004204291.1| DNA primase [Bacillus subtilis BSn5]
 gi|320018278|gb|ADV93264.1| DNA primase [Bacillus subtilis BSn5]
          Length = 603

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/570 (26%), Positives = 266/570 (46%), Gaps = 26/570 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + +  +     I  +IG YV   ++  N     Y+  CPFH E TPSF  +  K  
Sbjct: 4   RIPDEIVDQVQKSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLI 118
           ++CF C   G+  SFL  + G SF ESV  LA    +  P    V      +   +  + 
Sbjct: 59  FHCFGCGAGGNVFSFLRQMEGYSFAESVSHLADKYQIDFPDDITVHSGARPESSGEQKMA 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              E+   F+HH L      +    YL  RG     I  F++GYA DS   + + L ++G
Sbjct: 119 EAHELLKKFYHHLLINTKEGQEALDYLLSRGFTKELINEFQIGYALDSWDFITKFLVKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           FSE ++ +AGLLI  ++ +  +DRFRNR++FPI    G V+AF GR L   +  KY+NSP
Sbjct: 179 FSEAQMEKAGLLIRREDGSGYFDRFRNRVMFPIHDHHGAVVAFSGRAL-GSQQPKYMNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LFHK K LYNF+ A  +++K  R           +L EG+ DV+S   +GV+  +++
Sbjct: 238 ETPLFHKSKLLYNFYKARLHIRKQERA----------VLFEGFADVISAVSSGVKESIAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT+LT+  +++L +    I+LC+D D  G  A  KA +L       G +V   ++  G 
Sbjct: 288 MGTSLTDDHVKILRRNVEEIILCYDSDKAGYEATLKASEL---LQKKGCKVRVAMIPDGL 344

Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD +I+ +G   F+  +I  S+ ++    +   + ++ +   +R      +   I+ + 
Sbjct: 345 DPDDYIKKFGGEKFKNDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYIKDVLKEISTLS 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               +  Y + +        +    + S + +  K      + K     L   +  K +L
Sbjct: 405 GSLEQEVYVKQLASEFSLSQESLTEQLSVFSKQNKPADNSGETKTRRAHLTTKARQK-RL 463

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++   +++++    +   +++ +E + L ++L++ + E     P+ 
Sbjct: 464 RPAYENAERLLLAHMLRDRSVIKKVIDRVG-FQFNIDEHRALAAYLYAFYEEGAELTPQH 522

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           +  R+ +    +LL  +     +  L  A 
Sbjct: 523 LMARVTDDHISQLLSDILMLQVNQELSEAE 552


>gi|227499200|ref|ZP_03929335.1| DNA primase [Acidaminococcus sp. D21]
 gi|226904647|gb|EEH90565.1| DNA primase [Acidaminococcus sp. D21]
          Length = 605

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/633 (25%), Positives = 275/633 (43%), Gaps = 45/633 (7%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
             F + +     I +++ + VD  ++        +W CCPFH EKTPSF  N  KGF++C
Sbjct: 9   ESFKEQVRQAADIVSVVSETVDLKKKGR-----RFWGCCPFHSEKTPSFTVNPEKGFFHC 63

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRLIE 122
           F C   GD  +F+      SF+E+ + LA   G+P+P  +   E+  +E+ + +++   E
Sbjct: 64  FGCGAGGDVFTFVMKRDHVSFVEAERILANKYGIPIPEPEKTAEEIRREQEEKEIVGTNE 123

Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           +A  FFH  L K    K    YL  RGI    +E F+LG AP    +  + L ++G  E+
Sbjct: 124 LAARFFHACLTKTQYGKEGLTYLASRGIGMDIVESFELGLAPPDAQTFHKALEKRGIPEK 183

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETI 240
            +++AGL I   +S   YD+FR R++ PI++ RG+V+ F GR L K     KY+N+PET 
Sbjct: 184 TLLKAGL-IGQSDSGRIYDKFRERIMIPIKNPRGKVVGFTGRILRKEASPAKYMNTPETS 242

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
            FHKG+ L+    AL  ++K              ++VEG+MD +SL  AG+   V+S+GT
Sbjct: 243 WFHKGRLLFGMDRALPSIRK----------RRQALIVEGHMDAISLHAAGITWAVASMGT 292

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A TEYQ +LL +++P ++ CFD D+ G  AA ++I + L     G     + ++ G+DPD
Sbjct: 293 AFTEYQAKLLKRVTPEVIFCFDSDNAGRNAAMRSIPIAL---AVGLECRVMHVTDGKDPD 349

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FIR  G+ AF  L+ ++   +D             T   +      +       +    
Sbjct: 350 EFIRKDGQEAFLSLLDQAKGGIDYEVDTVLSRSDVTTLSGKVGAVSEILPFFKDCRSDVE 409

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                + +  RL     +  +E+    R          +             K  +    
Sbjct: 410 VGERIRDLSRRLVLDEGEIRSEYQKLVRPNGSGRPFNPEWL--------LQKKVAIKSPT 461

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  +L  L+    I  +Q        +     + +++   +      +    ++ + 
Sbjct: 462 QQAERGVLYALLMGLEIDPDQAGFAHTDAFSTAARRAIFTSYCARKGAGTFHDGRDLFED 521

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + E G  EL   L   +                + +  +  L    +   L ++ E   +
Sbjct: 522 VNEEGAAELSTILASSI------------PQETLPEVLRDCL-FRLQTATLEKEYERHSE 568

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
              +   +G  EK    +     + ++I  + S
Sbjct: 569 LAQRYEKEGN-EKFLEELQECRRIRMEIRNLRS 600


>gi|16766510|ref|NP_462125.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|161616203|ref|YP_001590168.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi
           B str. SPB7]
 gi|167551874|ref|ZP_02345627.1| DNA primase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|167990235|ref|ZP_02571335.1| DNA primase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168231813|ref|ZP_02656871.1| DNA primase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168237908|ref|ZP_02662966.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168243041|ref|ZP_02667973.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168262828|ref|ZP_02684801.1| DNA primase [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168463577|ref|ZP_02697494.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|194450817|ref|YP_002047208.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194472212|ref|ZP_03078196.1| DNA primase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194735480|ref|YP_002116167.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197251239|ref|YP_002148140.1| DNA primase [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197264535|ref|ZP_03164609.1| DNA primase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|200389149|ref|ZP_03215761.1| DNA primase [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205354125|ref|YP_002227926.1| DNA primase [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207858468|ref|YP_002245119.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224585013|ref|YP_002638812.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi
           C strain RKS4594]
 gi|130909|sp|P07362|PRIM_SALTY RecName: Full=DNA primase
 gi|154405|gb|AAA27241.1| dnaG protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16421767|gb|AAL22084.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|161365567|gb|ABX69335.1| hypothetical protein SPAB_04006 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409121|gb|ACF69340.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194458576|gb|EDX47415.1| DNA primase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194710982|gb|ACF90203.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195633226|gb|EDX51640.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197214942|gb|ACH52339.1| DNA primase [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197242790|gb|EDY25410.1| DNA primase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197289182|gb|EDY28551.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|199606247|gb|EDZ04792.1| DNA primase [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205273906|emb|CAR38908.1| DNA primase [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205323288|gb|EDZ11127.1| DNA primase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205331063|gb|EDZ17827.1| DNA primase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205333716|gb|EDZ20480.1| DNA primase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205337854|gb|EDZ24618.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205348472|gb|EDZ35103.1| DNA primase [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|206710271|emb|CAR34629.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224469541|gb|ACN47371.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi
           C strain RKS4594]
 gi|261248340|emb|CBG26177.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995405|gb|ACY90290.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159763|emb|CBW19282.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312914238|dbj|BAJ38212.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321225893|gb|EFX50947.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323131571|gb|ADX19001.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326629244|gb|EGE35587.1| DNA primase [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
 gi|332990076|gb|AEF09059.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 581

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 173/631 (27%), Positives = 293/631 (46%), Gaps = 58/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    DF+  SL +   K    YL +RG+ +  I+ F +G+AP    +  +       +
Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  +++AG+L+  +   ++YDRFRNR++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  Y  +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   + +L++ +  ++ C+DGD  G  AA++A++  + ++  G +V F+ L  GEDP
Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         ++PD   +L       IN +    
Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDA 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    Q +  +L       +                     P+ +L ++++        
Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGVSRPAPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +         L   +     L  L+  L    + Q      ++
Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    +  I    + +  +L  +    LL  ++EE
Sbjct: 504 LELYRGTNDAATLEKL-------SMWDDIADKAI--AEKTFTDSLN-HMFDSLLQLRQEE 553

Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627
           +   IA+    G  +E+   L ++  E+  +
Sbjct: 554 L---IARDRTHGLSSEERRELWTLNQELARK 581


>gi|229512572|ref|ZP_04402043.1| DNA primase [Vibrio cholerae TMA 21]
 gi|229530332|ref|ZP_04419720.1| DNA primase [Vibrio cholerae 12129(1)]
 gi|229332105|gb|EEN97593.1| DNA primase [Vibrio cholerae 12129(1)]
 gi|229350465|gb|EEO15414.1| DNA primase [Vibrio cholerae TMA 21]
          Length = 601

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 171/633 (27%), Positives = 289/633 (45%), Gaps = 68/633 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 19  IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 73

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---------PKIEKKEKI 113
           +CF C   G+ + F+       F E+++ LA+  G+ +   +              K + 
Sbjct: 74  HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPYSPFAKNTPAVKSED 133

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+   LK   +K    YL  RG+    ++ F +GY  D    +R + 
Sbjct: 134 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 193

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  SE+ ++ AG+LI+ DN    YDRFR R++FPIR  RG+VI FGGR +++  + KY
Sbjct: 194 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 251

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 252 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 301

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L+LL++ +  ++ C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 302 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 361

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK  FE+ +  + PL   L++   E    N  + + ++ L       
Sbjct: 362 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 421

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D  L+    + + +R     Q             KK  +  ++  P + + ++ +
Sbjct: 422 IDKIPDPFLQEVLEKLLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM 471

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  LI +P+  +      +        L   +S +     +  +
Sbjct: 472 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 517

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +   +     LL +L        +     E  +  + +   Q +         
Sbjct: 518 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 567

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            +Q E ++ +      +     +      L ++
Sbjct: 568 EKQIENLQAK------ERSVGLSTEEKRELQDL 594


>gi|49481308|ref|YP_038351.1| DNA primase [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|49332864|gb|AAT63510.1| DNA primase [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 598

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/630 (25%), Positives = 273/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL +RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLNVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      +      +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEGYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++  P +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E           Q      R      +K E
Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  +I Q+      E     ++ L     +
Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|228929336|ref|ZP_04092361.1| DNA primase [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228830350|gb|EEM75962.1| DNA primase [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 598

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/630 (25%), Positives = 274/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL +RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTPLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++  P +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E           Q      R      +K E
Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  +I Q+      E     ++ L     +
Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|229507129|ref|ZP_04396635.1| DNA primase [Vibrio cholerae BX 330286]
 gi|229509008|ref|ZP_04398496.1| DNA primase [Vibrio cholerae B33]
 gi|229519676|ref|ZP_04409119.1| DNA primase [Vibrio cholerae RC9]
 gi|229606192|ref|YP_002876840.1| DNA primase [Vibrio cholerae MJ-1236]
 gi|229344365|gb|EEO09340.1| DNA primase [Vibrio cholerae RC9]
 gi|229353933|gb|EEO18867.1| DNA primase [Vibrio cholerae B33]
 gi|229355874|gb|EEO20794.1| DNA primase [Vibrio cholerae BX 330286]
 gi|229368847|gb|ACQ59270.1| DNA primase [Vibrio cholerae MJ-1236]
          Length = 601

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/633 (27%), Positives = 289/633 (45%), Gaps = 68/633 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 19  IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 73

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113
           +CF C   G+ + F+       F E+++ LA+  G+ +      P           K + 
Sbjct: 74  HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 133

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+   LK   +K    YL  RG+    ++ F +GY  D    +R + 
Sbjct: 134 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 193

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  SE+ ++ AG+LI+ DN    YDRFR R++FPIR  RG+VI FGGR +++  + KY
Sbjct: 194 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 251

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 252 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 301

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L+LL++ +  ++ C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 302 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 361

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK  FE+ +  + PL   L++   E    N  + + ++ L       
Sbjct: 362 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 421

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D  L+    + + +R     Q             KK  +  ++  P + + ++ +
Sbjct: 422 IDKIPDPFLQEILEKLLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM 471

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  LI +P+  +      +        L   +S +     +  +
Sbjct: 472 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 517

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +   +     LL +L        +     E  +  + +   Q +         
Sbjct: 518 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 567

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            +Q E ++ +      +     +      L ++
Sbjct: 568 EKQIENLQAK------ERSVGLSTEEKRELQDL 594


>gi|227504572|ref|ZP_03934621.1| DNA primase [Corynebacterium striatum ATCC 6940]
 gi|227198832|gb|EEI78880.1| DNA primase [Corynebacterium striatum ATCC 6940]
          Length = 646

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/653 (21%), Positives = 250/653 (38%), Gaps = 45/653 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +    PI  ++G+YV                  PF +EKTPSFH    +G+
Sbjct: 5   RIPESDIQAIRERAPIEEIVGEYVQLKPAG----YDSLKGLSPFKEEKTPSFHVRPQRGY 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118
           Y+CFS    GD  SFL  +   SF E+V+ +A   G  +         + +    +  LI
Sbjct: 61  YHCFSTGKGGDVFSFLMEMEQVSFPEAVEAVAQKIGYHINYQGGSTGNRNEKPGTRQRLI 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              +   +F+   L+  +      +L  RG     I  F+ GYAP+   +  +HL + GF
Sbjct: 121 AANKAVHEFYRQQLETPQAATAREFLLNRGFSREIIYEFECGYAPEGWDTATKHLLRMGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           S E++  AG  I         DRF  RL++PI+   G VI FG R L   ++  KY+N+P
Sbjct: 181 SFEELEAAG--ISKMGKRGPIDRFHRRLLWPIKDLSGNVIGFGARKLFDDDNLGKYMNTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+HK K L+    A   +            +   ++VEGY DV+++  AGV+  V+S
Sbjct: 239 ETMLYHKSKVLFGLDLAKRNIA----------EAHQAVVVEGYTDVMAMYAAGVKTAVAS 288

Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA     L++L          +  ++  FDGD+ G +A  +A            +   
Sbjct: 289 CGTAFGGDHLQVLRRLMLDDSYFNGELIYTFDGDEAGQKAVMRAFQGEQAFTG---QSFV 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G  A  +LI + +P+ + + +        +T + R +       
Sbjct: 346 SVAPDGMDPCDLRLAKGDAAVRELIADRIPMFEFVIQSVLSEHRIDTAEGRLQALRRAVP 405

Query: 411 CINHIKDQKLRYYYSQAIRDRLQ--QLFQKYITEHSGYGRYWKKNARHRDQKGPSQR-LM 467
            +  I+D  L+  Y++ +   +      +          R  K++ R R    P +    
Sbjct: 406 VVAQIRDAPLQREYARRLAGWVGWPNPEEVLQQVQQEARRPKKQDKRARLADAPIKAGTP 465

Query: 468 QSSLVKGKLSKKPSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
             +     +   PS RE         L   + +P +    +  +    Y N   + +   
Sbjct: 466 APAQQNTPVFHVPSPRETHLWPQREALKLALQYPGLAGSYFDGITADAYSNESYRIVREA 525

Query: 522 L--FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT-EANIVDVRQGY 578
           +               E    +         +     V +  +      + +     + Y
Sbjct: 526 ISTVGGVAAGANLPSVEWIAAVAGEMLDLTAR---NFVSELAVEPIKVGDESDPKAWEVY 582

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             ++    +   +  Q  +I+ Q+ ++    + +    L + L  +     ++
Sbjct: 583 ADSVLSRLQEVRVGDQVAQIKAQLGRMRPSDDEQAYNSLFADLVALEQARREL 635


>gi|291484967|dbj|BAI86042.1| DNA primase [Bacillus subtilis subsp. natto BEST195]
          Length = 603

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/570 (26%), Positives = 267/570 (46%), Gaps = 26/570 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + +  +     I  +IG YV   ++  N     Y+  CPFH E TPSF  +  K  
Sbjct: 4   RIPDEIVDQVQKSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLI 118
           ++CF C   G+  SFL  + G SF ESV  LA    +  P    V      +   +  + 
Sbjct: 59  FHCFGCGAGGNVFSFLRQMEGYSFAESVSHLADKYQIDFPDDITVHSGARPESSGEQKMA 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              E+   F+HH L      +    YL  RG     I+ F++GYA DS   + + L ++G
Sbjct: 119 EAHELLKKFYHHLLINTKEGQEALDYLLSRGFTKELIDEFQIGYALDSWDFITKFLVKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           FSE ++ +AGLLI  ++ +  +DRFRNR++FPI    G V+AF GR L   +  KY+NSP
Sbjct: 179 FSEAQMEKAGLLIRREDGSGYFDRFRNRVMFPIHDHHGAVVAFSGRAL-GSQQPKYMNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LFHK K LYNF+ A  +++K  R           +L EG+ DV+S   +GV+  +++
Sbjct: 238 ETPLFHKSKLLYNFYKARLHIRKQERA----------VLFEGFADVISAVSSGVKESIAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT+LT+  +++L +    I+LC+D D  G  A  KA +L       G +V   ++  G 
Sbjct: 288 MGTSLTDDHVKILRRNVEEIILCYDSDKAGYEATLKASEL---LQKKGCKVRVAMIPDGL 344

Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD +I+ +G   F+  +I  S+ ++    +   + ++ +   +R      +   I+ + 
Sbjct: 345 DPDDYIKKFGGEKFKNDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYIKDVLKEISTLS 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               +  Y + +        +    + S + +  K      + K     L   +  K +L
Sbjct: 405 GSLEQEVYVKQLASEFSLSQESLTEQLSVFSKQNKPADNSGETKTRRAHLTTKARQK-RL 463

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++   +++++    +   +++ +E + L ++L++ + E     P+ 
Sbjct: 464 RPAYENAERLLLAHMLRDRSVIKKVIDRVG-FQFNIDEHRALAAYLYAFYEEGAELTPQH 522

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           +  R+ +    +LL  +     +  L  A 
Sbjct: 523 LMARVTDDHISQLLSDILMLQVNQELSEAE 552


>gi|330469556|ref|YP_004407299.1| DNA primase [Verrucosispora maris AB-18-032]
 gi|328812527|gb|AEB46699.1| DNA primase [Verrucosispora maris AB-18-032]
          Length = 620

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 145/649 (22%), Positives = 252/649 (38%), Gaps = 49/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I+ +I   V           G+    CPFHDEK+PSF+ + ++  
Sbjct: 4   RIRDEDIALVRERASIAEVISDTVTLKSAGA----GNLKGLCPFHDEKSPSFNVSPARNV 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEK-IQT 115
           +YCF C   GD + FL      SF+E+V+RLAA  G+ L         P+ E+ ++  + 
Sbjct: 60  WYCFGCGAGGDAIKFLMDAEHLSFVEAVERLAARVGLQLRYVEDDRSTPRRERPQQGQRQ 119

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L+     A +F+   L  A  +    +L +RG D  A E +  G+AP+    L  HLRQ
Sbjct: 120 RLVAAHAAAAEFYTAQLTTAGARAAREFLAQRGFDRAAAERYGCGFAPEGWDPLTRHLRQ 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYL 234
           +GFS ++++ AGL     +  +  DRFR RL++PIR   G VI FG R L   +   KYL
Sbjct: 180 RGFSHDELVTAGLSRPARSG-SLIDRFRRRLLWPIRDLTGDVIGFGARKLFDDDDGPKYL 238

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+PET ++ K + LY    A   + K  R          +++VEGY DV++   AGV   
Sbjct: 239 NTPETPIYKKSQVLYGIDQAKREIAKQGR----------VVVVEGYTDVMACHLAGVPTA 288

Query: 295 VSSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           V++ GTA     + +L +       ++  I+  FDGD  G +AA +A +     +    R
Sbjct: 289 VATCGTAFGGDHIGVLRRLLLDTDAVAGEIIFTFDGDAAGQKAALRAFEDDQRFVG---R 345

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
               +     DP       G  A   L+    PLVD   +        +T D R E    
Sbjct: 346 TFIAVSPDNMDPCELRLAKGDLAVRDLVARREPLVDFALRHVISRFDLDTVDGRVEAMRR 405

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
               +  +KDQ+ R  Y + +   L    +                        P     
Sbjct: 406 AAPLVAKLKDQEKRPEYVRKLAGDLGMEIEPVQRAVLAAASG-----------RPMDTPA 454

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           + +  +  +    S+ E   L   +  P +    +  +    Y +     + + +     
Sbjct: 455 RPARSEPSVDSPQSMVEREALKLALQEPVLAGPMFDAVEATDYRHPVHVVVRTAIAEAGG 514

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                      + + +       + L   V +  +     +         Y        +
Sbjct: 515 AASATAGAVWVEAVRDACEDLAAQAL---VGELAVEPLRIDGEPDP---RYVSITMARLQ 568

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           +  ++ +  +++ +I ++      ++       L  +      +  Q A
Sbjct: 569 WGSVTARIRDLKSRIQRINPVSNKDEYFATFGELLSLEQHARALREQAA 617


>gi|322613614|gb|EFY10555.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322621207|gb|EFY18065.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322624270|gb|EFY21104.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627992|gb|EFY24781.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322633110|gb|EFY29852.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322636313|gb|EFY33021.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322643487|gb|EFY40049.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322644794|gb|EFY41329.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322648603|gb|EFY45050.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322653655|gb|EFY49981.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322657763|gb|EFY54031.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322663864|gb|EFY60063.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322669125|gb|EFY65276.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322672882|gb|EFY68989.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322678128|gb|EFY74191.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322681304|gb|EFY77337.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322687766|gb|EFY83733.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195578|gb|EFZ80755.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323199741|gb|EFZ84831.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323202511|gb|EFZ87551.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323208001|gb|EFZ92947.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323212447|gb|EFZ97264.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323215071|gb|EFZ99819.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323222801|gb|EGA07166.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323224118|gb|EGA08411.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323230442|gb|EGA14560.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323235206|gb|EGA19292.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323239247|gb|EGA23297.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323244395|gb|EGA28401.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323247012|gb|EGA30978.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323253506|gb|EGA37335.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256188|gb|EGA39924.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323262636|gb|EGA46192.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323267268|gb|EGA50752.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323269330|gb|EGA52785.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 581

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 173/631 (27%), Positives = 293/631 (46%), Gaps = 58/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    DF+  SL +   K    YL +RG+ +  I+ F +G+AP    +  +       +
Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  +++AG+L+  +   ++YDRFRNR++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  Y  +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 NIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   + +L++ +  ++ C+DGD  G  AA++A++  + ++  G +V F+ L  GEDP
Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         ++PD   +L       IN +    
Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDA 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    Q +  +L       +                     P+ +L ++++        
Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGVSRPAPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +         L   +     L  L+  L    + Q      ++
Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    +  I    + +  +L  +    LL  ++EE
Sbjct: 504 LELYRGTNDAATLEKL-------SMWDDIADKAI--AEKTFTDSLN-HMFDSLLQLRQEE 553

Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627
           +   IA+    G  +E+   L ++  E+  +
Sbjct: 554 L---IARDRTHGLSSEERRELWTLNQELARK 581


>gi|221314768|ref|ZP_03596573.1| DNA primase [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|255767574|ref|NP_390400.2| DNA primase [Bacillus subtilis subsp. subtilis str. 168]
 gi|251757308|sp|P05096|PRIM_BACSU RecName: Full=DNA primase
 gi|225185202|emb|CAB14451.2| DNA primase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 603

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/570 (26%), Positives = 265/570 (46%), Gaps = 26/570 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + +  +     I  +IG YV   ++  N     Y+  CPFH E TPSF  +  K  
Sbjct: 4   RIPDEIVDQVQKSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLI 118
           ++CF C   G+  SFL  + G SF ESV  LA    +  P    V      +   +  + 
Sbjct: 59  FHCFGCGAGGNVFSFLRQMEGYSFAESVSHLADKYQIDFPDDITVHSGARPESSGEQKMA 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              E+   F+HH L      +    YL  RG     I  F++GYA DS   + + L ++G
Sbjct: 119 EAHELLKKFYHHLLINTKEGQEALDYLLSRGFTKELINEFQIGYALDSWDFITKFLVKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           FSE ++ +AGLLI  ++ +  +DRFRNR++FPI    G V+AF GR L   +  KY+NSP
Sbjct: 179 FSEAQMEKAGLLIRREDGSGYFDRFRNRVMFPIHDHHGAVVAFSGRAL-GSQQPKYMNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LFHK K LYNF+ A  +++K  R           +L EG+ DV+S   + V+  +++
Sbjct: 238 ETPLFHKSKLLYNFYKARLHIRKQERA----------VLFEGFADVISAVSSDVKESIAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT+LT+  +++L +    I+LC+D D  G  A  KA +L       G +V   ++  G 
Sbjct: 288 MGTSLTDDHVKILRRNVEEIILCYDSDKAGYEATLKASEL---LQKKGCKVRVAMIPDGL 344

Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD +I+ +G   F+  +I  S+ ++    +   + ++ +   +R      +   I+ + 
Sbjct: 345 DPDDYIKKFGGEKFKNDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYIKDVLKEISTLS 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               +  Y + +        +    + S + +  K      + K     L   +  K +L
Sbjct: 405 GSLEQEVYVKQLASEFSLSQESLTEQLSVFSKQNKPADNSGETKTRRAHLTTKARQK-RL 463

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++   +++++    +   +++ +E + L ++L++ + E     P+ 
Sbjct: 464 RPAYENAERLLLAHMLRDRSVIKKVIDRVG-FQFNIDEHRALAAYLYAFYEEGAELTPQH 522

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           +  R+ +    +LL  +     +  L  A 
Sbjct: 523 LMARVTDDHISQLLSDILMLQVNQELSEAE 552


>gi|153214932|ref|ZP_01949715.1| DNA primase [Vibrio cholerae 1587]
 gi|124115005|gb|EAY33825.1| DNA primase [Vibrio cholerae 1587]
          Length = 609

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 171/633 (27%), Positives = 288/633 (45%), Gaps = 68/633 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 27  IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 81

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---------PKIEKKEKI 113
           +CF C   G+ + F+       F E+++ LA+  G+ +   +              K + 
Sbjct: 82  HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPYSPFAKNTPAVKSED 141

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+   LK   +K    YL  RG+    ++ F +GY  D    +R + 
Sbjct: 142 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 201

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  SE+ ++ AG+LI+ DN    YDRFR R++FPIR  RG+VI FGGR +++  + KY
Sbjct: 202 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 259

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 260 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 309

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L+LL++ +  ++ C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 310 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 369

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK  FE+ +  + PL   L++   E    N  + + ++ L       
Sbjct: 370 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 429

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I  I D  L+    + + +R     Q             KK  +  ++  P + + ++ +
Sbjct: 430 IEKIPDPFLQEVLEKLLDERTGFDHQLRR----------KKARKTENRPAPHKVIKRTPM 479

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  LI +P+  +      +        L   +S +     +  +
Sbjct: 480 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 525

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +   +     LL +L        +     E  +  + +   Q +         
Sbjct: 526 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 575

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            +Q E ++ +      +     +      L ++
Sbjct: 576 EKQIENLQAK------ERSVGLSTEEKRELQDL 602


>gi|271963878|ref|YP_003338074.1| DNA primase [Streptosporangium roseum DSM 43021]
 gi|270507053|gb|ACZ85331.1| DNA primase [Streptosporangium roseum DSM 43021]
          Length = 616

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 154/645 (23%), Positives = 258/645 (40%), Gaps = 44/645 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +    PI++++G+++       NA  G+    CPFHDEK+PSF+   ++G+
Sbjct: 4   RISDEDIALVRERSPIADIVGEHIQL----RNAGGGNLKGLCPFHDEKSPSFNVTPTRGY 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIR 119
           +YCF C   GD ++F+  L   SF E+V+RLA  AG+ L          +++  ++ LI 
Sbjct: 60  WYCFGCAEGGDVITFVRRLEHLSFGEAVERLANRAGIQLRYEQGGYVPGREQGERSRLIE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A +F+   L          +L ERG +    E F +GYAP    +L  HL  +GF+
Sbjct: 120 AHRAAAEFYASKLSAPDAAIGRKFLSERGFERVDAEHFGVGYAPAEWEALARHLMARGFT 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238
             ++I+ GL  +        DRFR RL++PIR   G VI FG R L+   +  KYLN+PE
Sbjct: 180 SAELIKGGLAKE--GRRGPIDRFRGRLVWPIRDITGDVIGFGARKLNDAEDGPKYLNTPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + L+ K + LY    A   + K           S  ++VEGY DV++   +GV   V++ 
Sbjct: 238 SPLYKKSEVLYGVDLAKREISK----------RSQAVIVEGYTDVMACHLSGVPTAVATC 287

Query: 299 GTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  E  +++L +           +V  FDGD  G +AA +A       +    +    
Sbjct: 288 GTAFGEEHIKVLRRLLLDQSGSQGEVVFTFDGDAAGQKAALRAFADEQKFVT---QTFVA 344

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP       G+ A   LI    PL     +        +T + R          
Sbjct: 345 VQPDGLDPCDLRVRQGEAAVRDLIASREPLFAFAIRSMISRYDVSTNEGRLSALDAAAPI 404

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  IKD+ LR  Y   +   L           +       + A       P Q+      
Sbjct: 405 VAGIKDRALRQLYGVDLDRWLG---------FNNERFVMDRIAEISATAQPRQQRPAGPR 455

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
               L+      EA +L   +  PA+L   +  +    +   E   L+  +         
Sbjct: 456 KVADLTDPGVRTEAEVLKLAVQRPALLGPGFDAIGPAAFTLPEHVALYKLVMDTGGTAAA 515

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                  +   +R  G +   L   V    +     +       + Y  A+        +
Sbjct: 516 GHG---GREWVDRLLGGVTDALRGVVTRFAVEELRADVASE---ERYASAMLAALELVSV 569

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            R  E+++ ++ +     E ++   L   L  +  Q   ++ + A
Sbjct: 570 VRAIEQLKSRMQRTNPVEEQQEYNRLFGELVALEQQRRVLKERAA 614


>gi|238910013|ref|ZP_04653850.1| DNA primase [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
          Length = 580

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 175/630 (27%), Positives = 293/630 (46%), Gaps = 57/630 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    DF+  SL +   K    YL +RG+ +  I+ F +G+AP    +  +       +
Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  +++AG+L+  +   ++YDRFRNR++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  Y  +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   + +L++ +  ++ C+DGD  G  AA++A++  + ++  G +V F+ L  GEDP
Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         ++PD   +L       IN +    
Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDA 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    Q +  +L       +                     P+ ++ Q+ +        
Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGVSRPAPQIKQTPM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P++       Q LA  +     L+ L+S L S  V Q      ++
Sbjct: 452 -----RILIGLLVQNPSLAPLVPPLQGLAQSKL--PGLR-LFSELVSLCVAQPGLNTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L          SA  +    +V + +   L       +L ++ EE
Sbjct: 504 LENYRGTSEYSTLEKL----------SAWNDIRDENVEKMFTDTLNRIFDA-MLEQRLEE 552

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +    T +  +E+      I   +  +
Sbjct: 553 LIAR--DRTHRLSSEERREYWEIRQALEKK 580


>gi|262172394|ref|ZP_06040072.1| DNA primase [Vibrio mimicus MB-451]
 gi|261893470|gb|EEY39456.1| DNA primase [Vibrio mimicus MB-451]
          Length = 587

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 169/633 (26%), Positives = 283/633 (44%), Gaps = 68/633 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113
           +CF C   G+ + F+       F E+++ LA+  G+ +      P           K + 
Sbjct: 60  HCFGCGAHGNAIDFVMEFERMEFPEAIEELASTIGLEVVREERTPSSPFSKNTPTVKSEE 119

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+   LK   ++    YL  RG+    ++ F +GY  D    +R + 
Sbjct: 120 KRSLYDLMGSIAQFYRQQLKQPNNRHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNF 179

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  SE+ ++ AG+LI+ DN    YDRFR R++FPIR  RG+VI FGGR +++  + KY
Sbjct: 180 GQQRSSEDMLVTAGMLIESDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L+LL++ + ++V C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 288 SVASLGTSTTGDHLQLLFRQTNQVVCCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK  FE+ +  + PL   L+    E    N  + + ++ L       
Sbjct: 348 PDGEDPDSYVRKYGKADFEQQLANATPLSQYLFDNLIELHQLNLGSHEGKSALRALATPL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D  L+    + + +R    F   +          +       ++ P         
Sbjct: 408 IDKIPDPFLQEILEKLLDERTG--FDHQLRRKKARNSENRPAPHKAIKRTPM-------- 457

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  L+ +P+  +      +        L   +S +     +  +
Sbjct: 458 -------------RDVIALLVQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 503

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +   +     LL +L        +     E  +  + +   Q +         
Sbjct: 504 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 553

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            +Q E ++ +      +     +      L ++
Sbjct: 554 EKQIENLQAK------ERSVGLSTEEKRELQDL 580


>gi|47567856|ref|ZP_00238564.1| DNA primase [Bacillus cereus G9241]
 gi|52141208|ref|YP_085622.1| DNA primase [Bacillus cereus E33L]
 gi|118479465|ref|YP_896616.1| DNA primase [Bacillus thuringiensis str. Al Hakam]
 gi|196039168|ref|ZP_03106474.1| DNA primase [Bacillus cereus NVH0597-99]
 gi|217961784|ref|YP_002340354.1| DNA primase [Bacillus cereus AH187]
 gi|218905430|ref|YP_002453264.1| DNA primase [Bacillus cereus AH820]
 gi|222097739|ref|YP_002531796.1| DNA primase [Bacillus cereus Q1]
 gi|225866274|ref|YP_002751652.1| DNA primase [Bacillus cereus 03BB102]
 gi|228916925|ref|ZP_04080487.1| DNA primase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228987543|ref|ZP_04147662.1| DNA primase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229123832|ref|ZP_04253026.1| DNA primase [Bacillus cereus 95/8201]
 gi|229141031|ref|ZP_04269574.1| DNA primase [Bacillus cereus BDRD-ST26]
 gi|229157907|ref|ZP_04285981.1| DNA primase [Bacillus cereus ATCC 4342]
 gi|229186533|ref|ZP_04313695.1| DNA primase [Bacillus cereus BGSC 6E1]
 gi|229198420|ref|ZP_04325126.1| DNA primase [Bacillus cereus m1293]
 gi|301055786|ref|YP_003793997.1| DNA primase [Bacillus anthracis CI]
 gi|47555533|gb|EAL13876.1| DNA primase [Bacillus cereus G9241]
 gi|51974677|gb|AAU16227.1| DNA primase [Bacillus cereus E33L]
 gi|118418690|gb|ABK87109.1| DNA primase [Bacillus thuringiensis str. Al Hakam]
 gi|196029795|gb|EDX68396.1| DNA primase [Bacillus cereus NVH0597-99]
 gi|217067852|gb|ACJ82102.1| DNA primase [Bacillus cereus AH187]
 gi|218535323|gb|ACK87721.1| DNA primase [Bacillus cereus AH820]
 gi|221241797|gb|ACM14507.1| DNA primase [Bacillus cereus Q1]
 gi|225787966|gb|ACO28183.1| DNA primase [Bacillus cereus 03BB102]
 gi|228585120|gb|EEK43232.1| DNA primase [Bacillus cereus m1293]
 gi|228596964|gb|EEK54622.1| DNA primase [Bacillus cereus BGSC 6E1]
 gi|228625566|gb|EEK82319.1| DNA primase [Bacillus cereus ATCC 4342]
 gi|228642464|gb|EEK98752.1| DNA primase [Bacillus cereus BDRD-ST26]
 gi|228659653|gb|EEL15299.1| DNA primase [Bacillus cereus 95/8201]
 gi|228772275|gb|EEM20722.1| DNA primase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228842749|gb|EEM87835.1| DNA primase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|300377955|gb|ADK06859.1| DNA primase [Bacillus cereus biovar anthracis str. CI]
 gi|324328198|gb|ADY23458.1| DNA primase [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 598

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/630 (25%), Positives = 274/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL +RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++  P +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E           Q      R      +K E
Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  +I Q+      E     ++ L     +
Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|62181727|ref|YP_218144.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62129360|gb|AAX67063.1| DNA biosynthesis; DNA primase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322716213|gb|EFZ07784.1| DNA primase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 581

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 173/631 (27%), Positives = 293/631 (46%), Gaps = 58/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    DF+  SL +   K    YL +RG+ +  I+ F +G+AP    +  +       +
Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  +++AG+L+  +   ++YDRFRNR++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  Y  +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   + +L++ +  ++ C+DGD  G  AA++A++  + ++  G +V F+ L  GEDP
Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         ++PD   +L       IN +    
Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDA 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    Q +  +L       +                     P+ +L ++++        
Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGVSLPAPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +         L   +     L  L+  L    + Q      ++
Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    +  I    + +  +L  +    LL  ++EE
Sbjct: 504 LELYRGTNDAATLEKL-------SMWDDIADKAI--AEKTFTDSLN-HMFDSLLQLRQEE 553

Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627
           +   IA+    G  +E+   L ++  E+  +
Sbjct: 554 L---IARDRTHGLSSEERRELWTLNQELARK 581


>gi|304322158|ref|YP_003855801.1| DNA primase [Parvularcula bermudensis HTCC2503]
 gi|303301060|gb|ADM10659.1| DNA primase [Parvularcula bermudensis HTCC2503]
          Length = 625

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 193/638 (30%), Positives = 300/638 (47%), Gaps = 35/638 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            +   F+ ++   +  S++IG+ V   +        ++    PF  EKTPSF  ND KG 
Sbjct: 3   RFTPQFLDEIRARLRASDVIGRTVKLTKEGR-----EFRGLSPFTQEKTPSFFVNDEKGK 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           ++ FS    GD + FL      +F E+V  LA +AG+ LP   P+ E++ +    +    
Sbjct: 58  FFDFSAGKSGDIIGFLMETQNLAFPEAVASLAELAGLDLPKSSPEEEERARSAKGVAEAN 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             A  FF   L     K    YL++RG+ + A   F LGYAP  R +LR+ L +KGF   
Sbjct: 118 LEAAKFFREQLTRKPGKHALAYLEQRGVGAAARGAFGLGYAPGDRTALRDTLMEKGFDLS 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +++AGL+I  D+    YD+FR+R++FPI  SRG+VIAFGGR LS+  S KY+NSPET+L
Sbjct: 178 CLVDAGLVIRPDDG-EPYDKFRDRVMFPI-LSRGKVIAFGGRALSRSVSAKYMNSPETVL 235

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHK   LY +  A   L+            + ++L EGYMDV++L +AG    V+ LGTA
Sbjct: 236 FHKSATLYGYDRARKKLK----------DDTPLLLAEGYMDVIALDEAGYA-AVAPLGTA 284

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           +TE QL LLW++    V+C DGD  G +AA++ ID  L  L PG  + F  L  G+DPD 
Sbjct: 285 VTEAQLGLLWRVCDEPVVCLDGDRAGQKAAFRVIDRALPLLAPGKSLRFAFLPEGKDPDD 344

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +R  G  A  +++  + PL ++LW  ETE     TP++ A    HL++ +  I+D  +R
Sbjct: 345 VLRGDGAKAMAQIVAAARPLAEVLWAHETEAHPQTTPEQVAGFRRHLRDRLAQIQDIDVR 404

Query: 422 YYYSQAIRDRLQQLFQKYITEHSG----------YGRYWKKNARHRDQKGPSQRLMQSSL 471
             Y     D+L+           G            R    +   R    P         
Sbjct: 405 RAYQHFFTDKLRAENGAAGPRTGGRPPAAGWRPEGARGRPSSGGFRPFAPPLSVSPALKA 464

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
           V    +   ++ EA L+LTL+ HP++ +    E+  +   +  L  L   L S  VE + 
Sbjct: 465 VNLNRTDARTVTEALLVLTLVFHPSLFKTCEDEIFALELVDPNLSALLGHLVSFVVECET 524

Query: 532 FLPEEIHQRLCERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
              E +   +      +L         R         E +    RQG+  AL+ ++    
Sbjct: 525 LDRESLENHISRVEKHQLTFAHWRDHKRLRLERFLRPETDDDQARQGWLNALSKHRFDGE 584

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           L+ + +E  +   +   +        L   +     ++
Sbjct: 585 LAAEVDEAARSAYRTVDE------ERLWREVIRHRTRL 616


>gi|262164052|ref|ZP_06031791.1| DNA primase [Vibrio mimicus VM223]
 gi|262027580|gb|EEY46246.1| DNA primase [Vibrio mimicus VM223]
          Length = 587

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/633 (26%), Positives = 282/633 (44%), Gaps = 68/633 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113
           +CF C   G+ + F+       F E+++ LA+  G+ +      P           K + 
Sbjct: 60  HCFGCGAHGNAIDFVMEFERMEFPEAIEELASTIGLEVVREERTPSSPFAKNTPTVKSEE 119

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+   LK   ++    YL  RG+    ++ F +GY  D    +R + 
Sbjct: 120 KRSLYDLMGSIAQFYRQQLKQPNNRHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNF 179

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  SE+ ++ AG+LI+ DN    YDRFR R++FPIR  RG+VI FGGR +++  + KY
Sbjct: 180 GQQRNSEDMLVTAGMLIESDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L+LL++ + ++V C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 288 SVASLGTSTTGDHLQLLFRQTNQVVCCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK   E+ +  + PL   L+    E    N  + + ++ L       
Sbjct: 348 PDGEDPDSYVRKYGKADLEQQLANATPLSQYLFDNLIELHQLNLGSHEGKSALRALATPL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D  L+    + + +R    F   +          +       ++ P         
Sbjct: 408 IDKIPDPFLQEILEKLLDERTG--FDHQLRRKKARNSENRPAPHKAIKRTPM-------- 457

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  L+ +P+  +      +        L   +S +     +  +
Sbjct: 458 -------------RDVIALLVQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 503

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +   +     LL +L        +     E  +  + +   Q +         
Sbjct: 504 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 553

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            +Q E ++ +      +     +      L ++
Sbjct: 554 EKQIENLQAK------ERSVGLSTEEKRELQDL 580


>gi|227817069|ref|YP_002817078.1| DNA primase [Bacillus anthracis str. CDC 684]
 gi|227002797|gb|ACP12540.1| DNA primase [Bacillus anthracis str. CDC 684]
          Length = 598

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/630 (25%), Positives = 277/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL +RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   +++KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTLKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++  P +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E     ++   +       R      +K E
Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEEVLQSHLET-----LRRHQEKLEKME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  +I Q+      E     ++ L     +
Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|228935613|ref|ZP_04098428.1| DNA primase [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228824053|gb|EEM69870.1| DNA primase [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 598

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/630 (25%), Positives = 273/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL +RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAF  L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFANLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++  P +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E           Q      R      +K E
Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  +I Q+      E     ++ L     +
Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|221310445|ref|ZP_03592292.1| DNA primase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221319691|ref|ZP_03600985.1| DNA primase [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323968|ref|ZP_03605262.1| DNA primase [Bacillus subtilis subsp. subtilis str. SMY]
          Length = 603

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/570 (26%), Positives = 264/570 (46%), Gaps = 26/570 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + +  +     I  +IG YV   ++  N     Y+  CPFH E TPSF  +  K  
Sbjct: 4   RIPDEIVDQVQKSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLI 118
           ++CF C   G+  SFL  + G SF ESV  LA    +  P    V      +   +  + 
Sbjct: 59  FHCFGCGAGGNVFSFLRQMEGYSFAESVSHLADKYQIDFPDDITVHSGARPESSGEQKMA 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              E+   F+HH L      +    YL  RG     I  F++GYA DS   + + L ++G
Sbjct: 119 EAHELLKKFYHHLLINTKEGQEALDYLLSRGFTKELINEFQIGYALDSWDFITKFLVKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           FSE ++ +AGLLI  ++ +  +DRFRNR++FPI    G V+AF GR L   +  KY+NSP
Sbjct: 179 FSEAQMEKAGLLIRREDGSGYFDRFRNRVMFPIHDHHGAVVAFSGRAL-GSQQPKYMNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LFHK K LYNF+ A  +++K  R           +L EG+ DV +   + V+  +++
Sbjct: 238 ETPLFHKSKLLYNFYKARLHIRKQERA----------VLFEGFADVNTAVSSDVKESIAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT+LT+  +++L +    I+LC+D D  G  A  KA +L       G +V   ++  G 
Sbjct: 288 MGTSLTDDHVKILRRNVEEIILCYDSDKAGYEATLKASEL---LQKKGCKVRVAMIPDGL 344

Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD +I+ +G   F+  +I  S+ ++    +   + ++ +   +R      +   I+ + 
Sbjct: 345 DPDDYIKKFGGEKFKNDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYIKDVLKEISTLS 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               +  Y + +        +    + S + +  K      + K     L   +  K +L
Sbjct: 405 GSLEQEVYVKQLASEFSLSQESLTEQLSVFSKQNKPADNSGETKTRRAHLTTKARQK-RL 463

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++   +++++    +   +++ +E + L ++L++ + E     P+ 
Sbjct: 464 RPAYENAERLLLAHMLRDRSVIKKVIDRVG-FQFNIDEHRALAAYLYAFYEEGAELTPQH 522

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           +  R+ +    +LL  +     +  L  A 
Sbjct: 523 LMARVTDDHISQLLSDILMLQVNQELSEAE 552


>gi|326381693|ref|ZP_08203387.1| DNA primase [Gordonia neofelifaecis NRRL B-59395]
 gi|326199940|gb|EGD57120.1| DNA primase [Gordonia neofelifaecis NRRL B-59395]
          Length = 636

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/645 (21%), Positives = 242/645 (37%), Gaps = 33/645 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +     I +++G YV   R   + +       CPFHDEKTPSFH     G 
Sbjct: 4   RIPDRDIAAIREQTRIEDIVGDYVTLRRAGADRLT----GLCPFHDEKTPSFHVRPHHGH 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD  +FL  L   SF+E+V++LA   G  +         K     +  L+ 
Sbjct: 60  FHCFGCGEGGDVYTFLQKLEHVSFVEAVEQLADRIGYTINYEGGGTAIKRDRGTRARLVA 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A  ++   L     +    +L ERG D +A   F  GYAP    ++ + L ++GF 
Sbjct: 120 ANAAAQKYYAEQLATPDAQVARDFLTERGFDGNAAAHFGCGYAPAGWDTMTKALLKQGFQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
             ++  AGL   G       DRF  RL++PIR+  G VI FG R L   ++  KY+N+PE
Sbjct: 180 FSELEAAGLSKQGRK--GPIDRFHRRLLWPIRNLGGDVIGFGARKLFDDDNLGKYMNTPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T+L+ K + L+    A   + K             +++VEGY DV+++ QAGV   V+S 
Sbjct: 238 TMLYKKSQVLFGLDLAKRDIAK----------GHQVVIVEGYTDVMAMHQAGVTTAVASC 287

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN----RVNFVLLS 354
           GTA  E  L L+ +L                         L           +    +  
Sbjct: 288 GTAFGEDHLALIRRLMMDDSYFRGEVIYTFDGDAAGQAAALKAFEGEQSIAGQTFVAVAP 347

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G DP    +  G  A   LI   +P+     K     ++ +T + R          +  
Sbjct: 348 DGMDPCELRQRSGDPAVRDLIARRIPMFQFAIKTLIAQQNLDTAEGRVAALRETVPVVAR 407

Query: 415 IKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
           I+D  LR  Y++ +   +      Q+  +   +   YGR    ++R +  +   + +   
Sbjct: 408 IRDVALRDEYARQLAGWVGWDDVAQVLSRVRGDAKRYGRGKGGHSRQQSTRNRPEAMSAP 467

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              +   +      +   L   + +PAI    +  L    + +     +   + +     
Sbjct: 468 PTARPLPNDPRLWPQREALKAALQYPAIAGTVFDSLPGECFTDPSYLAIRESIAAAGGAA 527

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                      +      +    +   V +  +     E    D    Y  ++    +  
Sbjct: 528 SGLGGAAWVDAVHNGVVDDPA--VAPLVTELAVEPLPVE---DDRVPQYISSVLARSQEI 582

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +  Q  +I+ ++ +++   + +    L   L  +      +  Q
Sbjct: 583 WVGSQIADIKSKLRRMSPGNDPDGYNALFGDLVALEAYRRSLLEQ 627


>gi|297199502|ref|ZP_06916899.1| DNA primase [Streptomyces sviceus ATCC 29083]
 gi|197712951|gb|EDY56985.1| DNA primase [Streptomyces sviceus ATCC 29083]
          Length = 635

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 148/656 (22%), Positives = 268/656 (40%), Gaps = 46/656 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  + SKG 
Sbjct: 4   RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD ++F+  +   +F ESV+RLAA AG+ L   +       +   +  L+ 
Sbjct: 60  FHCFGCQEGGDTITFVMKVDHLTFSESVERLAAQAGITLRYEEGGYNPSHQRGERIRLVE 119

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             ++A D++   L  +        +L ERG D  A   F +GY+P     L  +LR KGF
Sbjct: 120 AHKIAADWYMEQLATSPEADTGRQFLAERGFDQAAAAHFSVGYSPQGWDHLTRYLRGKGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237
           S+++I+ +GL  +        DRFR RL++PIR   G V+ FG R L +     KYLN+P
Sbjct: 180 SDKEILLSGLAQE--GRRGPIDRFRGRLMWPIRDIGGDVVGFGARKLYEADNGPKYLNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T ++ K + LY    A   + K+ R           ++VEGY DV++   AGV   +++
Sbjct: 238 DTAIYRKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIAT 287

Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            GTA     +++L +L       R++  FDGD  G +AA +A +               +
Sbjct: 288 CGTAFGTDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP       G  A   L+    PL +   ++       +TP  RA         +
Sbjct: 345 APDGMDPCDLRLAKGDDAVADLVEPRTPLFEFALRQIVVRYDLDTPAGRAAALDEAAPIV 404

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             IK+   ++  +  +   L  L  +++ +       W ++   +      +   Q S  
Sbjct: 405 ARIKNSGAQHEVAVQLAGMLGILDTQFVVKRVAQLARWARDRGGKGPAPSGRGPQQPSYD 464

Query: 473 KGKLSKKPSLR----------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
                                E  LL   +  P ++   +       +       +   +
Sbjct: 465 GAHRPAVSGPALTLRNPVYATERELLKLALQRPELVSPAFDAYGIDEFTAPPYAAVRQAI 524

Query: 523 FSD-FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
                 E      ++   R+ E    + ++ +  ++    +   T +       + Y   
Sbjct: 525 MDAGGAEYGVQDSQDYLVRVREAAPDDAVRAMVTELAVEAIMRKTVD-------ENYAGD 577

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
             +  R R + R+ +EI+  + ++ + G+    A + + L  +      +  + A 
Sbjct: 578 QLVTVRRRAVDRRIQEIQGTLIRLGSGGDPAHLAAVQNELWVLQQYGQALRERGAA 633


>gi|163742973|ref|ZP_02150356.1| DNA primase [Phaeobacter gallaeciensis 2.10]
 gi|161383656|gb|EDQ08042.1| DNA primase [Phaeobacter gallaeciensis 2.10]
          Length = 749

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 178/448 (39%), Positives = 270/448 (60%), Gaps = 10/448 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L   + ++ ++G+ V WD+RK+N  KGD WA CPFH EK+ SFH +D KG
Sbjct: 1   MSLPPGFLDELRTRVSLTQVVGRKVMWDQRKSNQGKGDMWAPCPFHHEKSASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD L F+       F+E+VQ LA  AG+ +P  DP+ ++K+  +  L  +
Sbjct: 61  FYYCFGCHAKGDALKFVQETENVGFMEAVQILAQEAGMEMPARDPRAQQKQDHRAQLAEV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF   L     +    YL  RG+   A+E +++G+AP+   +L + LR KG  E
Sbjct: 121 MEQAVRFFRLQLNTRAGEGARSYLARRGLSGPALERWEIGFAPEGWQNLWDALRGKGVPE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E I+ AGL    +     YD FRNR++FPIR +RG+ IAFGGR +   ++ KYLNSPET 
Sbjct: 181 ELIMGAGLAKPSNKGGKPYDTFRNRIMFPIRDARGRAIAFGGRAMDPRDNAKYLNSPETA 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG++LYN   A     KS            +++ EGYMDV++L + G +  V+ LGT
Sbjct: 241 LFDKGRSLYNHGPARTASGKS----------GQLLVAEGYMDVIALAEGGFEASVAPLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+TE QL++LW+++   ++  DGD  GLRAA + IDL L  L  G  + F L+   +DPD
Sbjct: 291 AITENQLQMLWRIADEPIIALDGDTAGLRAAMRLIDLALPLLEAGKSLRFALMPEDKDPD 350

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR  G+ A + ++ +++P+V +LW+RETE + F++P+ +A L+  L++ I  I+D  +
Sbjct: 351 DLIRAEGREAVQAVLDQAMPMVRLLWQRETEGKVFDSPERKAALDKALRDKIRLIRDPSI 410

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGR 448
           R +Y + ++D   +LF+         G 
Sbjct: 411 RRHYGEDLQDLRWELFRGGRPREEAAGS 438



 Score = 63.4 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 70/224 (31%), Gaps = 21/224 (9%)

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQ--RLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
            +  SG  R   +         P        S L  G       +REA +L T+I  PA+
Sbjct: 527 KSRKSGGFRDGTRMPWRGKNAPPQPLETTRNSLLAGGSEESLARVREAVILATVITTPAV 586

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           + +    L  +    ++   L   +    ++    L EEI           L       +
Sbjct: 587 VAKYEVNLERMACIGSDHALLRDLVLRHGIDAPERLKEEIAAAAGAHALENLFALRHVAI 646

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------------AQ 604
                     E   + + + + +  A     R L  +  E E+ +               
Sbjct: 647 SPCLRRPGDVEVASLTLAEEFAKLEAS----RGLDAELAEAEEDLDGLADEAVTWRLGQA 702

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             A+ +A ++       ++V     ++  +E   + FG +  R+
Sbjct: 703 AEARNKAVRSENEDRAQYDVGENGARLNREER--DAFGALLERI 744


>gi|144897246|emb|CAM74110.1| DNA primase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 486

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 170/492 (34%), Positives = 255/492 (51%), Gaps = 19/492 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ +L     +  ++ + V   ++       ++   CPFH+EK+PSF  N+ KG
Sbjct: 1   MAFPPQFLDELRARASLVGVVARRVKLTKKGR-----EFQGLCPFHNEKSPSFTVNEEKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F++CF C   GD + F       SF E+V+RLA+  G+ +P   P+  + E  +  L   
Sbjct: 56  FFHCFGCGAHGDAIGFEMRAHHLSFTEAVERLASECGLEVPKATPEERRVEARRASLHDA 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  F+   L+    +    YL  RG+    I  F+LG++PDSR +L+  L      E
Sbjct: 116 MESACQFYEKHLRGPAGREGLAYLRGRGLSDDTIARFRLGWSPDSREALKTALMSDACPE 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            ++IE GLL   DN   S+D FR R++FP+   RG+VIAFG RTL      KYLNSP+T 
Sbjct: 176 AQLIEVGLLKKPDNGGASFDFFRGRVMFPVTDRRGRVIAFGARTL-GDGQPKYLNSPDTP 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG  LY    A    +            + ++  EGYMDV++L QAG    V+ LGT
Sbjct: 235 LFHKGATLYGLAIARETAR----------ERNVVMAAEGYMDVIALHQAGFTFAVAPLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+  +W+L+   +LCFDGD+ G RA  +A +  L    PG  + F  L   EDPD
Sbjct: 285 ALTEAQIEEMWRLADEPILCFDGDNAGQRAMARAAERGLPICKPGKSLRFATLPAPEDPD 344

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S I+  G  A + ++  + PLVD++W+  T+NR  +TP+ RA LE  LK+    I D+ +
Sbjct: 345 SLIKAKGPAAMQAVLDAAQPLVDVVWRLSTDNRPTDTPERRAALEKELKDKAFAITDETV 404

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR---HRDQKGPSQRLMQSSLVKGKLS 477
           R+ Y    RD+++ L +       G G +  +  R    R    P  R  +  L   + +
Sbjct: 405 RWQYLSVFRDKMRALTRPAWVPSQGKGGFGGQGRRADFKRRPGDPPLRGPRRPLPGARKA 464

Query: 478 KKPSLREAALLL 489
             P + E  +  
Sbjct: 465 PPPQVDERGVAA 476


>gi|304396866|ref|ZP_07378746.1| DNA primase [Pantoea sp. aB]
 gi|304355662|gb|EFM20029.1| DNA primase [Pantoea sp. aB]
          Length = 581

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/598 (28%), Positives = 280/598 (46%), Gaps = 42/598 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA   G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNFDRLEFVESIEELATSHGLDVPYEAGSGPSQMERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E    F+   L+ +  +    YLD RG+ +  I  F +GYAP    ++ +   ++   
Sbjct: 119 LMENLNGFYQQGLQQSSAQPARDYLDRRGLSADIINHFAIGYAPAGWDNVLKRFGKQSED 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            E ++EAG+L+  D    +YDRFR+R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RESLMEAGMLVSNDKG-RTYDRFRDRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A+    +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 PIFHKGRQLYGLYEAVKNHPEPAR----------LLVVEGYMDVVALAQYGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         ++ D +A L       I  I  + 
Sbjct: 347 DTLVRKEGKAAFEARMEQAMPLSSFLFDSLLPQVDLSSRDGKARLSTLALPLITQIPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +        +  +       P +R              
Sbjct: 407 LRIYMRQELGNKLGILDDNQLEKL----MPKQAASGTAPVAPPLKRTTM----------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  LI +P +                 L  L+  L     E       ++ +
Sbjct: 452 -----RVLIALLIQNPQLATMVPSLDGLSESKMPGL-PLFIELVGRCNENPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                 F + L+ L   + +  +     EA   D       A    +   L++R++ +
Sbjct: 506 LYRGTNFSQTLETLA--IWNHMIVDEEAEAVFQDSLASIYDAALEERLEFLIARERTQ 561


>gi|258623777|ref|ZP_05718734.1| DNA primase [Vibrio mimicus VM603]
 gi|258583900|gb|EEW08692.1| DNA primase [Vibrio mimicus VM603]
          Length = 591

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 169/633 (26%), Positives = 283/633 (44%), Gaps = 68/633 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 9   IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 63

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113
           +CF C   G+ + F+       F E+++ LA+  G+ +      P           K + 
Sbjct: 64  HCFGCGAHGNAIDFVMEFERMEFPEAIEELASTIGLEVVREERTPSSPFTKNTPTVKSEE 123

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+   LK   ++    YL  RG+    ++ F +GY  D    +R + 
Sbjct: 124 KRSLYDLMGSIAQFYRQQLKQPNNRHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNF 183

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  SE+ ++ AG+LI+ DN    YDRFR R++FPIR  RG+VI FGGR +++  + KY
Sbjct: 184 GQQRNSEDMLVTAGMLIESDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 241

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 242 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 291

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L+LL++ + ++V C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 292 SVASLGTSTTGDHLQLLFRQTNQVVCCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 351

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK  FE+ +  + PL   L+    E    N  + + ++ L       
Sbjct: 352 PDGEDPDSYVRKYGKADFEQQLANATPLSQYLFDNLIELHQLNLGSHEGKSALRALATPL 411

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D  L+    + + +R    F   +          +       ++ P         
Sbjct: 412 IDKIPDPFLQEILEKLLDERTG--FDHQLRRKKARNSENRPAPHKAIKRTPM-------- 461

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  L+ +P+  +      +        L   +S +     +  +
Sbjct: 462 -------------RDVIALLVQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 507

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +   +     LL +L        +     E  +  + +   Q +         
Sbjct: 508 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 557

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            +Q E ++ +      +     +      L ++
Sbjct: 558 EKQIENLQAK------ERSVGLSTEEKRELQDL 584


>gi|229525181|ref|ZP_04414586.1| DNA primase [Vibrio cholerae bv. albensis VL426]
 gi|229338762|gb|EEO03779.1| DNA primase [Vibrio cholerae bv. albensis VL426]
          Length = 601

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/633 (27%), Positives = 290/633 (45%), Gaps = 68/633 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 19  IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 73

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113
           +CF C   G+ + F+       F E+++ LA+  G+ +      P           K + 
Sbjct: 74  HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 133

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+   LK   +K    YL  RG+    ++ F +GY  D    +R + 
Sbjct: 134 KRSLYDLMGSIAQFYRQQLKIPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 193

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  SE+ ++ AG+LI+ DN    YDRFR R++FPIR  RG+VI FGGR +++  + KY
Sbjct: 194 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 251

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 252 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 301

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L+LL++ +  ++ C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 302 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGREAAWRALENALSYLKSGNILKFLFL 361

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK  FE+ +  + PL   L++   E    N  + + ++ L       
Sbjct: 362 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 421

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D  L+    +++ +R     Q             KK  +  ++  P + + ++ +
Sbjct: 422 IDKIPDPFLQEVLEKSLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM 471

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  LI +P+  +      +        L   +S +     +  +
Sbjct: 472 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 517

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +   +     LL +L        +     E  +  + +   Q +         
Sbjct: 518 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 567

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            +Q E ++ +      +     +      L ++
Sbjct: 568 EKQIENLQAK------ERSVGLSTEEKRELQDL 594


>gi|161506226|ref|YP_001573338.1| DNA primase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160867573|gb|ABX24196.1| hypothetical protein SARI_04419 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 580

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 176/630 (27%), Positives = 294/630 (46%), Gaps = 57/630 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    DF+  SL +   K    YL +RG+ +  I+ F +G+AP    +  +       +
Sbjct: 119 LLNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  +++AG+L+  +   ++YDRFRNR++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY F+ A  Y  +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGFYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   + +L++ +  ++ C+DGD  G  AA++A++  + ++  G +V F+ L  GEDP
Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         ++PD   +L       IN +    
Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDA 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    Q +  +L       +                     P+ ++ Q+ +        
Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGLSRPAPQIKQTPM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P++       Q LA  +     L+ L+S L S  V Q      ++
Sbjct: 452 -----RILIGLLVQNPSLAPLVPPLQGLAQSKL--PGLR-LFSELVSLCVAQPGLNTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L          SA  +    +V + +   L       +L ++ EE
Sbjct: 504 LENYRGTSEYSTLEKL----------SAWNDIRDENVEKMFTDTLNRIFDA-MLEQRLEE 552

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +    T +  +E+      I   +  +
Sbjct: 553 LIAR--DRTHRLSSEERREYWEIRQALEKK 580


>gi|158522164|ref|YP_001530034.1| DNA primase [Desulfococcus oleovorans Hxd3]
 gi|158510990|gb|ABW67957.1| DNA primase [Desulfococcus oleovorans Hxd3]
          Length = 613

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/646 (23%), Positives = 269/646 (41%), Gaps = 41/646 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P D I ++     I +++ + V   +   N     Y   CPFH EKTPSF  +  K 
Sbjct: 1   MYIPDDIIANIKNSADIVDIVSEVVRLKKTGKN-----YLGLCPFHSEKTPSFTVSPDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLI 118
            ++CF C   G   +FL    G  F E+V  LA   G+ LP  +    + +    +  L+
Sbjct: 56  MFHCFGCGEGGSVFTFLMKHQGLGFPEAVALLAKRCGIALPRPEKGSREAKDVSERQRLL 115

Query: 119 RLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            +++ A  F+H  L+     +R   Y+ ERG+    +  F+LGYAP    +L   L +  
Sbjct: 116 SVMQRAAAFYHSCLREGPGGERATRYMAERGLSDDMVRDFQLGYAPGGWDALTRFLSKHK 175

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
                  +AGL++     +  YDRFRNR+IFPI    G+VIA GGR +      KYLNSP
Sbjct: 176 IPMPLAEQAGLVVLNREGSGYYDRFRNRIIFPITDLTGRVIALGGRVM-DDTLPKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET L+ K  +LY         +           +  + + EGYMD LSL + G++NVV++
Sbjct: 235 ETPLYSKSNSLYGLSHTKQMCR----------QAGTVYITEGYMDFLSLYRHGIKNVVAT 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTALT   LR+L     + VL FD D  G++AA ++I++       G +   ++L  G 
Sbjct: 285 LGTALTAEHLRMLKGFVTKAVLVFDSDAAGIKAAQRSIEIFNGE--KGIQPFILVLPTGH 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD+++R  G   FE L  ++   +  L +         + + +  +   L+  +  ++D
Sbjct: 343 DPDTYVRENGAQDFEALARKAGGAMSFLLESAVNR-HGLSLEGKIRVMSDLEESLAAVED 401

Query: 418 QKLRYYYSQAIRDRLQ----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
              R  Y + + +RL      + +K     +       + +        S    +     
Sbjct: 402 GVARSLYVKEVSERLGIEESAVLEKVRQAAARRRSRSARPSLFTVDTSASGGDQRKEETT 461

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             +  +    E  LL  +++ P ++ E         + +  L+ + + L +     +   
Sbjct: 462 ASVFGRSLRMERQLLSMMLHVPEMISEIESRNVLSLFADERLKTIGTLLVTHRRALENRS 521

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            +     + +    E L+++   +          E     +   +  +           R
Sbjct: 522 VD-----IVDVVPDESLQRIVSALCVGDELCMWNETGCRKLIGQFVDSR---------LR 567

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMI 638
             + +  +I       + +    L+    E V  ++   +  E+ +
Sbjct: 568 HVDTLSHRIKAAEENRDGDLLDHLLKAKQEQVRNKLTIEQKGESAL 613


>gi|196046384|ref|ZP_03113610.1| DNA primase [Bacillus cereus 03BB108]
 gi|196022854|gb|EDX61535.1| DNA primase [Bacillus cereus 03BB108]
          Length = 598

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/630 (25%), Positives = 274/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL +RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPNKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++  P +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E           Q      R      +K E
Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  +I Q+      E     ++ L     +
Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|323704676|ref|ZP_08116254.1| DNA primase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536138|gb|EGB25911.1| DNA primase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 598

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/635 (24%), Positives = 298/635 (46%), Gaps = 40/635 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+Y +D I  ++    I +++  YV   +        D+   CPFH EKTPSF+ +  K 
Sbjct: 1   MSYSKDVIDRVIEENDIVDVVSSYVSLKKSGK-----DFKGLCPFHHEKTPSFNVSQEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118
            Y+CF C   G+ ++F+  +    F E+V+ LA  AG+ +          +K+K++ ++ 
Sbjct: 56  LYHCFGCQASGNVITFVMNIENVGFKEAVEFLADRAGIEIEEENLSGLEYQKKKLKDEIY 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +  +A  F+H  L +   +    YL +RGID   I+ F LG++P S   L ++L+++ +
Sbjct: 116 EVNRLAALFYHRYLYSKFGQAALKYLYDRGIDDITIKRFGLGFSPPSGLELLKYLKRRNY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           + + ++ AGL+    ++ + YDRF+NR++FPI   +  VI FGGR +      KYLN+PE
Sbjct: 176 NTDVLVSAGLVSKS-STGSYYDRFKNRVMFPIIDEKNNVIGFGGRVM-DDAKPKYLNTPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F KGK LY    A                    I+VEGYMD ++L Q+G+ NVV+SL
Sbjct: 234 TVVFKKGKTLYGINYAKKS------------KEDMFIIVEGYMDAIALYQSGLDNVVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT  Q RL+ K    +V+ +D D+ G+ A  + ++L+    +    VN + +  G+D
Sbjct: 282 GTALTLEQGRLIKKYKNTVVISYDADEAGIEATMRGLNLLDELDL---NVNILTVPNGKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD ++R  G  AF+KL+ ++  L++   K+  ++     P +R +    +   +  +KD+
Sbjct: 339 PDEYVRKEGFDAFKKLLEKTDTLIEYKIKKYKQDLDLEKPSDRIKYIKKVCKDLATVKDE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y   + +  +        E   + + + +N +       + R         K+  
Sbjct: 399 VKRDVYISIVSEDAEIPENTIRAEIDQFVKGFLQNNKKIRYTVGNNRHNIKYSGAKKIPS 458

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                   L+  L+    +      +L+    ++  L+ + S++F    +  +   +++ 
Sbjct: 459 L-----KYLIALLLIDNKLYSRVKGKLSVDDIEDEHLKAVMSYIFERLEDGGHVDVKDLS 513

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L      +    +   +    +  A+ +     VR+  +  +          R+   I
Sbjct: 514 FMLDNADLKDEFNDIFNVLYSEKV--ASEKIVDDCVREIIKDDIR---------RKIASI 562

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +++I      G+ EK   L+  L +   ++  +++
Sbjct: 563 KREIDDSYNAGDIEKERELLIQLQKYEKEMLNLKN 597


>gi|262042264|ref|ZP_06015429.1| DNA primase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259040328|gb|EEW41434.1| DNA primase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 581

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 180/629 (28%), Positives = 297/629 (47%), Gaps = 54/629 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFISDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P    +   + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPYEAGNGPSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL          YL +RG+ S  I  F +GYAP    ++ +       +
Sbjct: 119 LLDGLNAFYQQSLMQLAADPARQYLAKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L      KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNPEPPR----------LLVVEGYMDVVALAQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++++  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         +TPD RA+L       I  +  + 
Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSTPDGRAQLSTLALPLITQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +                     P+ +L ++++        
Sbjct: 407 LRIYLRQELGNKLGILDDAQLERL-------MPKQAENGAPRPAPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +                 L  L+S L    + Q      ++ +
Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLEGLDSRKMPGL-SLFSELVKSCLAQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           +         L++L        +W    + +I    Q +  +L  +    LL  ++EE+ 
Sbjct: 506 QYRGTKEAATLEKL-------SMWDDIADKDI--AEQTFTDSLN-HMFDSLLELRQEEL- 554

Query: 600 KQIAQVTAKG-EAEKTAILISILHEVHIQ 627
             IA+    G  +E+   L +I  E+  +
Sbjct: 555 --IARDRTHGLSSEERRELWTISQELAKK 581


>gi|198242235|ref|YP_002217191.1| DNA primase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197936751|gb|ACH74084.1| DNA primase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|326624967|gb|EGE31312.1| DNA primase [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 581

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 173/631 (27%), Positives = 293/631 (46%), Gaps = 58/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    DF+  SL +   K    YL +RG+ +  I+ F +G+AP    +  +       +
Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  +++AG+L+  +   ++YDRFRNR++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  Y  +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   + +L++ +  ++ C+DGD  G  AA++A++  + ++  G +V F+ L  GEDP
Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         ++PD   +L       IN +    
Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDA 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    Q +  +L       +                     P+ +L ++++        
Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDHLV-------PKQAESGVSRPAPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +         L   +     L  L+  L    + Q      ++
Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    +  I    + +  +L  +    LL  ++EE
Sbjct: 504 LELYRGTNDAATLEKL-------SMWDDIADKAI--AEKTFTDSLN-HMFDSLLQLRQEE 553

Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627
           +   IA+    G  +E+   L ++  E+  +
Sbjct: 554 L---IARDRTHGLSSEERRELWTLNQELARK 581


>gi|9910841|sp|Q9X4D0|PRIM_BACST RecName: Full=DNA primase
 gi|4416324|gb|AAD20315.1| DNA primase [Geobacillus stearothermophilus]
          Length = 597

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 164/632 (25%), Positives = 267/632 (42%), Gaps = 46/632 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+ +   + I ++IG+YV   R+  N     Y+  CPFH EKTPSF  +  K  
Sbjct: 4   RIPEETIEAIRRGVDIVDVIGEYVQLKRQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDL 117
           ++CF C   G+  +FL  + G  F+E+ +RLAA AGV L V +     + + +      +
Sbjct: 59  FHCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAKAGVDLSVYELDVRGRDDGQTDEAKAM 118

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
                +   F+HH L      +    YL  RG     I+ F++GYAPD+  +  + L   
Sbjct: 119 TEAHALLKRFYHHLLVHTKEGQAALDYLQARGWTKETIDRFEIGYAPDAPDAAAKLLESH 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            FS   + +AGLL           RFRNR++FPI   RG+ + F GR L +G   KY+NS
Sbjct: 179 SFSLPVMEKAGLLTKK-EDGRYVGRFRNRIMFPIHDHRGETVGFSGRLLGEG-HPKYVNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F KG  LY+F  A   ++K              +LVEG+ DV+S  QAG+   ++
Sbjct: 237 PETPVFRKGAILYHFHAARVPIRK----------RQEALLVEGFADVISAAQAGIDYAIA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT+LTE Q R+L      I +C+DGD  G+ AA+ A +        G RV    L  G
Sbjct: 287 TMGTSLTEEQARILRP-CDTITICYDGDRAGIEAAWAAAE---QLSALGCRVKVASLPNG 342

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +IR YG   F        PLV          ++     ER          I  + 
Sbjct: 343 LDPDEYIRVYGGERFAGEAGCRRPLVAFKMAYLRRGKNLQHEGERLRYIDEALREIGKLS 402

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               + YY + + +           + S   R   K       +          ++  KL
Sbjct: 403 SPVEQDYYLRQLAEEFSLSLSALHEQLSRSQRERTK------PREAPDGETARPMLAKKL 456

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++    +     + +   R++  E + L +++++ + E     P  
Sbjct: 457 LPAFQNAERLLLAHMMRSRDVALVVQERIGG-RFNIEEHRALAAYIYAFYEEGHEADPGA 515

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +  R+          +L     D  L     + +  ++    +  L    R + L  + +
Sbjct: 516 LISRIPG--------ELQPLASDVSLLLIADDVSEQELEDYIRHVLN---RPKWLMLKVK 564

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           E EK   +   + +    A +   + E+   +
Sbjct: 565 EQEK--TEAERRKDFLTAARIAKEMIEMKKML 594


>gi|258623541|ref|ZP_05718542.1| DNA primase [Vibrio mimicus VM573]
 gi|258584203|gb|EEW08951.1| DNA primase [Vibrio mimicus VM573]
          Length = 591

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 169/633 (26%), Positives = 283/633 (44%), Gaps = 68/633 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 9   IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 63

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113
           +CF C   G+ + F+       F E+++ LA+  G+ +      P           K + 
Sbjct: 64  HCFGCGAHGNAIDFVMEFERMEFPEAIEELASTIGLEVVREERTPSSPFSKNTPTVKSEE 123

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+   LK   ++    YL  RG+    ++ F +GY  D    +R + 
Sbjct: 124 KRSLYDLMGSIAQFYRQQLKQPNNRHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNF 183

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  SE+ ++ AG+LI+ DN    YDRFR R++FPIR  RG+VI FGGR +++  + KY
Sbjct: 184 GQQRSSEDMLVTAGMLIESDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 241

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 242 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 291

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L+LL++ + ++V C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 292 SVASLGTSTTGDHLQLLFRQTNQVVCCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 351

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK  FE+ +  + PL   L+    E    N  + + ++ L       
Sbjct: 352 PDGEDPDSYVRKYGKADFEQQLANATPLSQYLFDNLIELHQLNLGSHEGKSALRALATPL 411

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D  L+    + + +R    F   +          +       ++ P         
Sbjct: 412 IDKIPDPFLQEILEKLLDERTG--FDHQLRRKKARNSENRPAPHKAIKRTPM-------- 461

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  L+ +P+  +      +        L   +S +     +  +
Sbjct: 462 -------------RDVIALLVQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 507

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +   +     LL +L        +     E  +  + +   Q +         
Sbjct: 508 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 557

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            +Q E ++ +      +     +      L ++
Sbjct: 558 EKQIENLQAK------ERSVGLSTEEKRELQDL 584


>gi|228948007|ref|ZP_04110293.1| DNA primase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228811697|gb|EEM58032.1| DNA primase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 598

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/630 (25%), Positives = 274/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL +RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKQMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++  P +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E           Q      R      +K E
Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  +I Q+      E     ++ L     +
Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|254291202|ref|ZP_04961998.1| DNA primase [Vibrio cholerae AM-19226]
 gi|150422896|gb|EDN14847.1| DNA primase [Vibrio cholerae AM-19226]
          Length = 609

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 170/633 (26%), Positives = 282/633 (44%), Gaps = 68/633 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 27  IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 81

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113
           +CF C   G+ + F+       F E+++ LA+  G+ +      P           K + 
Sbjct: 82  HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 141

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+   LK   +K    YL  RG+    ++ F +GY  D    +R + 
Sbjct: 142 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 201

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  SE+ ++ AG+LI+ DN    YDRFR R++FPIR  RG+VI FGGR +++  + KY
Sbjct: 202 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 259

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV  
Sbjct: 260 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 309

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L+LL++ +  ++ C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 310 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 369

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK  FE+ +  + PL   L+    E    N  + + ++ L       
Sbjct: 370 PDGEDPDSYVRKYGKADFEQQLANATPLSQYLFDNLIELHQLNLGSHEGKSALRAVATPL 429

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D  L+    + + +R    F   +          +       ++ P         
Sbjct: 430 IDKIPDPFLQEVLEKLLDERTG--FDHQLRRKKARNTENRPAPHKAIKRTPM-------- 479

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  LI +P+  +      +        L   +S +     +  +
Sbjct: 480 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 525

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +   +     LL +L        +     E  +  + +   Q +         
Sbjct: 526 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 575

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            +Q E ++ +      +     +      L ++
Sbjct: 576 EKQIENLQAK------ERSVGLSTEEKRELQDL 602


>gi|40142|emb|CAA27537.1| unnamed protein product [Bacillus subtilis]
 gi|142865|gb|AAA22406.1| DNA primase [Bacillus subtilis]
 gi|1303832|dbj|BAA12488.1| DnaE [Bacillus subtilis]
          Length = 603

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/570 (26%), Positives = 264/570 (46%), Gaps = 26/570 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + +  +     I  +IG YV   ++  N     Y+  CPFH E TPSF  +  K  
Sbjct: 4   RIPDEIVDQVQKSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLI 118
           ++CF C   G+  SFL  + G SF ESV  LA    +  P    V      +   +  + 
Sbjct: 59  FHCFGCGAGGNVFSFLRQMEGYSFAESVSHLADKYQIDFPDDITVHSGARPESSGEQKMA 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              E+   F+HH L      +    YL  RG     I  F++GYA DS   + + L ++G
Sbjct: 119 EAHELLKKFYHHLLINTKEGQEALDYLLSRGFTKELINEFQIGYALDSWDFITKFLVKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           FSE ++ +AGLLI  ++ +  +DRFRNR++FPI    G V+AF GR L   +  KY+NSP
Sbjct: 179 FSEAQMEKAGLLIRREDGSGYFDRFRNRVMFPIHDHHGAVVAFSGRAL-GSQQPKYMNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LFHK K LYNF+ A  +++K  R           +L EG+ DV +   + V+  +++
Sbjct: 238 ETPLFHKSKLLYNFYKARLHIRKQERA----------VLFEGFADVYTAVSSDVKESIAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT+LT+  +++L +    I+LC+D D  G  A  KA +L       G +V   ++  G 
Sbjct: 288 MGTSLTDDHVKILRRNVEEIILCYDSDKAGYEATLKASEL---LQKKGCKVRVAMIPDGL 344

Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD +I+ +G   F+  +I  S+ ++    +   + ++ +   +R      +   I+ + 
Sbjct: 345 DPDDYIKKFGGEKFKNDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYIKDVLKEISTLS 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               +  Y + +        +    + S + +  K      + K     L   +  K +L
Sbjct: 405 GSLEQEVYVKQLASEFSLSQESLTEQLSVFSKQNKPADNSGETKTRRAHLTTKARQK-RL 463

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++   +++++    +   +++ +E + L ++L++ + E     P+ 
Sbjct: 464 RPAYENAERLLLAHMLRDRSVIKKVIDRVG-FQFNIDEHRALAAYLYAFYEEGAELTPQH 522

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           +  R+ +    +LL  +     +  L  A 
Sbjct: 523 LMARVTDDHISQLLSDILMLQVNQELSEAE 552


>gi|331082070|ref|ZP_08331198.1| hypothetical protein HMPREF0992_00122 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405665|gb|EGG85195.1| hypothetical protein HMPREF0992_00122 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 594

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/614 (25%), Positives = 265/614 (43%), Gaps = 44/614 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  D I+++     I ++I  YV   R+ +      Y+  CPFH+EK+PSF  +  K 
Sbjct: 1   MYYSDDLIEEVRSKNDIVDVISDYVKLQRKGS-----SYFGLCPFHNEKSPSFSVSPGKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+  +F+      SF+E+++ LA  AGV LP      + +     ++ L+
Sbjct: 56  MYYCFGCGAGGNVFTFIMEYENYSFVEALKYLADRAGVQLPEVEYSKEAKAASDFKSMLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + + A  F+++ LK    K    YL  R +    I+ F LG +P    +L ++L+ +G+
Sbjct: 116 EIQKKAASFYYYQLKQESGKPALDYLKGRQLSEDTIKKFGLGCSPRYSGALYQYLKGQGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S+E + E+GL           D+F NR++FPI     +VI FGGR +      KYLNSPE
Sbjct: 176 SDELLKESGLFNID-ERRGMQDKFWNRVMFPIMDVNNRVIGFGGRVM-GDAKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K +NLY    A              +   + I+ EGYMDV+++ QAG  N V+SL
Sbjct: 234 TKIFDKSRNLYGLNIAR------------TSRKPYFIICEGYMDVIAMYQAGFHNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     L+ + +  ++L +D D+ G +AA + I +       G     V L+  +D
Sbjct: 282 GTALTSGHASLMSRYTKEVLLTYDSDEAGQKAALRGIPI---LKAAGISPRVVNLAPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  GK AFEK + E+        K   +    + P+ + +    +   +    ++
Sbjct: 339 PDEFIKAEGKEAFEKRLEEAENYFLFEIKVLEKQYHLSDPESKTQFYREIARKLLEFPEE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y ++I  R Q  F+      +         A          R    S  K     
Sbjct: 399 LERNNYIESISARYQIKFEDLRRMVNNMALSGTGVAVK-------PRTEAVSKKKEGKED 451

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  +L  L ++P++ +     +    +      K+   +F    E     P ++ 
Sbjct: 452 AGHTAQKLMLTWLSSYPSMFKTIDGLIEPADFTTPLYHKVAEIVFEQHKEG-EVNPAKLL 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL------------YK 586
            R  +    + +  L              +A +  V +  + ++A              +
Sbjct: 511 NRFSDAEEQKEITSLFHASLHLESEEDAKKAVLETVCRLKRDSIAWQSTNLPPTDLFGLQ 570

Query: 587 RFRLLSRQKEEIEK 600
           R     ++ E++E+
Sbjct: 571 RIVEARKRLEDLER 584


>gi|269137813|ref|YP_003294513.1| DNA primase [Edwardsiella tarda EIB202]
 gi|267983473|gb|ACY83302.1| DNA primase [Edwardsiella tarda EIB202]
 gi|304557868|gb|ADM40532.1| DNA primase [Edwardsiella tarda FL6-60]
          Length = 582

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 178/624 (28%), Positives = 288/624 (46%), Gaps = 53/624 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I  L+   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVELVDARVKLKKQGKN-----YHACCPFHSEKTPSFTVNADKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA +AG+ +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATMAGLEVPYESGSGPSQMERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    ++  SL+     +   YL  RG+    ++ F +GYAP    +  +   +    
Sbjct: 119 LMDSLCGYYQQSLRQPGATQAQQYLTGRGMSQAIMDRFAIGYAPQGWDNALKRFGRDAGG 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  + +  SYDRFR+R++ PIR  RG+VIAFGGR L  G + KYLNSPET
Sbjct: 179 RTALNDAGMLV-NNENGRSYDRFRDRIMIPIRDKRGRVIAFGGRVLGNG-TPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ L+  + AL +  +  R          +++VEGYMDV++L Q GV   V+SLG
Sbjct: 237 EIFHKGRQLFGLYEALQHAAQPER----------LLVVEGYMDVIALAQYGVNYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  +V C+DGD+ G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRHTDSVVCCYDGDNAGREAAWRALETALPYLSDGRQLKFMFLPEGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ IR  G  AFE+ + ++ PL   L+         +TPD RA+L       I  +  + 
Sbjct: 347 DTLIRQEGAEAFERRMNDAHPLSAFLFDSLLPQVDLSTPDGRAKLSALALPLIGQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q++  +L  L    + +         KN +    K  +                
Sbjct: 407 LRLYLRQSLGQKLGILDDSQLEKLLPRRSEAVKNYQPPRLKPTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +PA+  E        ++    L  L+  L    + Q      ++ +
Sbjct: 452 -----RILIALLVQNPALAAEVPTLDGLRQHPLPGL-PLFIELVETCLAQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              +  +   L+ L        +     E  +  +   Y   L             + +E
Sbjct: 506 LYRDNKYASQLETLATW-NHMIIEPMVLETFVDTLGSLYDAVLE------------QRLE 552

Query: 600 KQIAQVTAKGEAEKTAILISILHE 623
           + IA+    G        +  L+E
Sbjct: 553 QLIARARTDGLTPAEREEVRSLNE 576


>gi|300933209|ref|ZP_07148465.1| DNA primase [Corynebacterium resistens DSM 45100]
          Length = 649

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 136/661 (20%), Positives = 259/661 (39%), Gaps = 50/661 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+  I+ +    PI  ++G+YV                  PF DEKTPSFH   +KG+
Sbjct: 8   RIPQADIEAIRERTPIEEVVGEYVQLKPAG----VDSLKGLSPFKDEKTPSFHVRPNKGY 63

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIR 119
           ++CFS    GD  SFL  +   +F E+V++ A   G  +        K+E+   +  L+ 
Sbjct: 64  FHCFSSGEGGDVFSFLMKMEHVTFPEAVEQCAERIGYQIRYEGGGPGKREEPGNRQRLVA 123

Query: 120 LIEVATDFFHHSLKNAR--DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             + A +F+     +     +    +L ERG      + F  G+AP    +L +HL +KG
Sbjct: 124 ANKAAHEFYREQFHSDIEGAEVAREFLLERGFQMEHADYFGCGFAPAGWDTLTKHLLRKG 183

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNS 236
           F+ +++  AGL           DRF  RL++PI++  G VI FG R L   +   KY+N+
Sbjct: 184 FNFKELEAAGLSR--MGQKGPIDRFHRRLLWPIKNVAGDVIGFGARKLFDDDKLGKYMNT 241

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET+L+ K K L+    A   +           SS   ++VEGY DV+++  AGV+  V+
Sbjct: 242 PETLLYKKSKVLFGIDHAKRNIA----------SSHQAVVVEGYTDVMAMHAAGVKTAVA 291

Query: 297 SLGTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
           + GTA     L++L +           I+  FDGD+ G +A  +A +          R  
Sbjct: 292 ACGTAFGADHLQMLRRFMLDDKFFRGEIIYTFDGDEAGQKAVMRAFEGDQQFTG---RSY 348

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
             +   G DP       G  A  +L+   +P+ + + +   E+    + D R      + 
Sbjct: 349 VTIAPGGMDPCDIRMDKGDAAVRELVASRIPMFEFVIRALLEDYDTASVDGRVHALRRIV 408

Query: 410 NCINHIKDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
             +  I+D+ +R  Y++     +  +     + +     R         + K  + R  +
Sbjct: 409 PVLAGIRDEAMRDEYARQASGWVGWEDPADVVNQVREEARKGHVEKPKLELKKGAAREER 468

Query: 469 SSLVKGKLSKKPSLRE------------AALLLTLINHPAILQEQYQELADIRYDNNELQ 516
            +       +     E              +L   +  P +  E +  +  + + +    
Sbjct: 469 QASTPAPELRAVETMERPDPNEDYLEGPREVLKIALQEPQLAGEMFDLMPPVSFSHPTYI 528

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            +   +       +          +       L+         + L           + +
Sbjct: 529 AIAQAMEKAGGAAQAKGGAAWIDHVAS-----LIGDAMGAAVVSELAVEDMHCQAGRL-K 582

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            Y  A+  + + R +  +  E++ ++ ++    + E+   L + L  +      ++++ A
Sbjct: 583 YYADAIMAHMQERWVGNEIAEMKSKMQRMRPDLQQEEYKALFADLMALEKYRRSLQARAA 642

Query: 637 M 637
            
Sbjct: 643 A 643


>gi|194333429|ref|YP_002015289.1| DNA primase [Prosthecochloris aestuarii DSM 271]
 gi|194311247|gb|ACF45642.1| DNA primase [Prosthecochloris aestuarii DSM 271]
          Length = 632

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/649 (26%), Positives = 274/649 (42%), Gaps = 39/649 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+  I ++   I I ++I  YV       N     Y A  PF  EKTPSF  +  K  Y
Sbjct: 2   IPQQKIDEIRQSIDIVDIIADYVKLQPSGRN-----YKALSPFTAEKTPSFVVSPDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CFS    G+  +FL  +   SF E+++ +A  AG+ +       + +++   +    ++
Sbjct: 57  KCFSSGKGGNVFTFLMEVEKISFPEAIEVVAKRAGIDISQYRHTSQDRDQKHNNEYDTLK 116

Query: 123 VATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A   ++  L +   K   +Y ++ER +    I  F +GYAPDS   L     +     E
Sbjct: 117 WAGRLYNRQLHSPSGKEGLHYLVNERKLSQKTIMTFGVGYAPDSWDFLTGEAGRSAIPVE 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETI 240
            +   GLL       +SYD FRNR++FPI S  GQVI FGGRTLS    S KYLNSPET 
Sbjct: 177 SLSLTGLLYHNARKNSSYDYFRNRIMFPIFSVAGQVIGFGGRTLSSDPNSPKYLNSPETP 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
            F K K LY    A N +++          +   ILVEGYMDVL+L QAG+   V+S GT
Sbjct: 237 FFDKSKVLYGLHAARNEIRR----------NGQAILVEGYMDVLALHQAGITTAVASCGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT+YQ  +L +    ++  +D DD G ++    ID+    +  G       L  G+DPD
Sbjct: 287 ALTKYQAAILQRYCSEVLFLYDADDAGQKSMLSGIDI---LVSSGLTPWTATLPEGDDPD 343

Query: 361 SFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           SFIR  GK AF   I E+    +D       +  + N P  +A     +   I+ ++D  
Sbjct: 344 SFIRKQGKEAFLDYIKENRLSFIDFQLAFHLKKGAMNEPRNKAIAVRSMLKTIHLVQDSM 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y Q +  +L                  K+  +    +       +  L       +
Sbjct: 404 QKELYLQELEQKLGISMAVLREIMLQMRAGQKQATQKPAPQHSGTDSEEPGL-------R 456

Query: 480 PSLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDF-----VEQK 530
            S++E   L  L+       E  +  +     ++  N     + + L + +         
Sbjct: 457 ISVQEKTFLKALLESVEYGNEVLEFASSHQELLQLSNPAATTVLTHLLNSYRNSIAHSGA 516

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
           +         + +     L   L      +  W A+ +      ++     L  +K   +
Sbjct: 517 HLDVAAEIGSIEDADARGLASGLLIDPPVSAHWQASFDEEQQKAKRCLTAFLDSFKHL-I 575

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ-EAMI 638
           L+  +++    I+++ +    E+   L S L  +  +  + E++  AMI
Sbjct: 576 LNHFRQQKTNLISRLRSAANLEEEKSLSSDLALLVREEQKTENEVNAMI 624


>gi|317493717|ref|ZP_07952134.1| DNA primase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918044|gb|EFV39386.1| DNA primase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 582

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 172/630 (27%), Positives = 294/630 (46%), Gaps = 56/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +L+   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLVDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNADKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ESV+ LA +AG+ +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVESVEELATMAGLEIPYEAGTGPSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++  +DF+  +L+    +    YL +RG+    I+ F +GYAP    +  +   +   S
Sbjct: 119 LMDGLSDFYQQALRQPSSQSAQQYLMQRGLSQEIIDHFAIGYAPAGWDNALKRFGRDPAS 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  + +  +YDRFR+R++FPIR  RG+VIAFGGR L    + KYLNSPET
Sbjct: 179 RTALNDAGMLV-NNENGRTYDRFRDRVMFPIRDRRGRVIAFGGRIL-GDGTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ L+  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLFGLYEAQQRHPELAR----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++L+++ +  +V C+DGD+ G  AA++A++  L  L  G ++ F+ L  GEDP
Sbjct: 287 TSTTSEHIQLMFRTTDTVVCCYDGDNAGREAAWRALETALPFLSDGRQLKFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  G  AFE+ I ++ PL   L+         +TPD R +L       I  I  + 
Sbjct: 347 DTLVRKEGTAAFEQRIEQAQPLSAFLFDTLMPQVDLSTPDGRTKLSALALPLIGQIPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q +  +L  L    + +          + +    K  +                
Sbjct: 407 LRLYLRQFLGQKLGILDDSQLEKLLPRQAETGNSYQQPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P++  E    + L +          L+  L    + Q      ++
Sbjct: 452 -----RILIGLLVQNPSLAAEVPTLEGLREHPLPGLP---LFIELVETCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +   +  + + L+ L        +     +  +  +   Y           +L +++EE
Sbjct: 504 IELYRDNKYAQQLETLATW-NHMVVEDMVHQTFVDTLGSLYDS---------MLEQRQEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +   + +      A++   L ++   +  +
Sbjct: 554 LI-ALDRTQGL-NADQRRELWALNQALAKK 581


>gi|157372532|ref|YP_001480521.1| DNA primase [Serratia proteamaculans 568]
 gi|157324296|gb|ABV43393.1| DNA primase [Serratia proteamaculans 568]
          Length = 582

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 175/630 (27%), Positives = 284/630 (45%), Gaps = 53/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDRLEFVETIEELATMHGLEVPYEAGSGPTQIERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+  SL          YL +RG+    I  F +G+AP    +  +   +   S
Sbjct: 119 LMEQLSSFYQQSLHQPSGAPARNYLQQRGLSDDVIRHFAIGFAPAGWDNALKRFGRDADS 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  ++   SYDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RSALNDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGMPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A        R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EVFHKGRQLYGLYEAQQNHPTPQR----------LLVVEGYMDVVALAQYGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRATDNVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ +  + PL   L++        ++PD RA+L       I  +  + 
Sbjct: 347 DTLVRKEGKEAFEQRMELAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLITQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q +  +L  L    + +            +    K  +                
Sbjct: 407 LRLYLRQQLGSKLGLLDDSQLDKLMPKQAENANTYQAPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +       L  +         L+  L    + Q      ++ +
Sbjct: 452 -----RILIGLLVQNPQLA-TLIPSLEGLEQTKQAGLPLFVELVQTCLAQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           +  +    + L+ L     +  +     E   +D       ++        L ++ E + 
Sbjct: 506 QYRDNKLSQQLETLATW--NHMIVEERVEQTFLDTLASLYDSV--------LEQRLETL- 554

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             IAQ    G + +    +  L++V  + +
Sbjct: 555 --IAQARTHGLSPEEREEVRSLNQVLAKKN 582


>gi|307129361|ref|YP_003881377.1| DNA primase [Dickeya dadantii 3937]
 gi|306526890|gb|ADM96820.1| DNA primase [Dickeya dadantii 3937]
          Length = 584

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 172/618 (27%), Positives = 285/618 (46%), Gaps = 50/618 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LAA+ G+ +P        + +   +  L  
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVESIEELAAMHGLEVPYEAGTGPTQLERHQRQSLYE 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+ H+L          YL  RG+    I  F +G  P    +  +   +   +
Sbjct: 119 LMEQLSAFYQHTLNQPAGTPAREYLSRRGLSDEVIRQFAIGCTPPGWDNALKRFGRSSEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  +++  +YDRFR+R++FPIR  RG+VIAFGGR +      KYLNSPET
Sbjct: 179 RTTLTDAGMLV-TNDNGRTYDRFRDRVMFPIRDKRGRVIAFGGRVM-GDGMPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEAQQKNPELKR----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATDQVVCCYDGDRAGRDAAWRALETALPYLDDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ I +++PL   L+    +    +TPD RA+L       I  +  + 
Sbjct: 347 DTLVRQEGKAAFEQRIEQAMPLSAFLFDSLLQQVDMSTPDGRAKLSTLALPLIGQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +            + +    K  +                
Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDRLLPKAAEQTSSYQPPRLKVTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                  L+  L+ +P +  E  +  L  +  +     +L+  L     E        + 
Sbjct: 452 -----RILIGLLVQNPRLSAEVPELALNGVEENKVAGLELFLDLVKTCNESPGMNMGLLL 506

Query: 539 QRLCERGFGELLKQLDR--QVRDAGLWSATTEANIVDVRQGYQQA----LALYKRFRLLS 592
           ++  E  + + L+ L     + +          ++ ++     Q     L   +R   LS
Sbjct: 507 EKYRESKYRKQLETLASWDHMIEEEELEEKFRVSLAELYDQLLQLRMDTLIARERTHGLS 566

Query: 593 ----RQKEEIEKQIAQVT 606
               ++   ++  + +  
Sbjct: 567 TNERKELWSLQLALTRKN 584


>gi|325962749|ref|YP_004240655.1| DNA primase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468836|gb|ADX72521.1| DNA primase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 642

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 146/663 (22%), Positives = 258/663 (38%), Gaps = 57/663 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ I ++     I  ++  YV           G +   CPFHDE++PSF      G Y
Sbjct: 5   IKREDIDEVRQRTDIKEVVDGYVTLKTAG----LGTFKGLCPFHDERSPSFTVRPQVGRY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLIR 119
           +CF C   GD ++F+      SF E+V++LAA  G  L   D       ++   +  L+ 
Sbjct: 61  HCFGCGEDGDVIAFVQKQDHSSFQEAVEKLAARIGYELRYEDGGTGPNREEVGRRQRLLD 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             ++A +FF   L          +L  RG D  A E F  GYAP    +L +HLR +GF+
Sbjct: 121 AHKIADEFFRAQLLTPGAAEARTFLHGRGFDRAAAEHFGCGYAPQGWDALLKHLRGRGFT 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           + ++   G+  +G+     YDRFR RLI+PI+   G  I FG R L + +   KYLN+PE
Sbjct: 181 DAELKLTGMFSEGNR--GIYDRFRGRLIWPIKDIAGDTIGFGARKLYEDDQGPKYLNTPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A   + K             +++VEGY DV++   AG+   V++ 
Sbjct: 239 TALYKKSQVLYGIDLAKRSIAKD----------RQLVVVEGYTDVMACHLAGITTAVATC 288

Query: 299 GTALTEYQLRLLWK------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           GTA     +++  +          +V  FDGD  G +AA +A +          +    +
Sbjct: 289 GTAFGTEHIKIARRLLSDDGTGGEVVFTFDGDAAGQKAALRAFEEDQRFTA---QTYVAV 345

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP    +  G  A   L+    PL +   +   +  + +T + R +        +
Sbjct: 346 EPSGADPCDLRQSRGDEAVHALVQSRRPLFEFAIRTTLKQFNLDTVEGRVQGLKASVPVV 405

Query: 413 NHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
             I+D   R  Y QA+   L      ++ +    E     +  +           +    
Sbjct: 406 AAIRDASTRTGYCQALTGWLGMPDPNEVLRLVNAELKNGAKRGETGGPAGPAARTAASTA 465

Query: 468 QSSLV---------------KGKLSKKPSLREAALLLTLINHPAIL-QEQYQELADIRYD 511
           Q                   +       +  E   L   +  P++L    ++  +  R+ 
Sbjct: 466 QPGGPGVAAGPPSGAVPSYHRPDPRDPVASMERQALEVALQEPSLLGGGIWERFSSARFV 525

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
               Q +   +            + +  R  E+   E+ + L   V +  +      A+ 
Sbjct: 526 TPAFQAVHDAM---RATDPALTADPV--RWVEQVMHEVPEPLRPLVSELSVVPLP--AST 578

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            +  Q Y + +        ++R K +   Q+ ++    + E    L   L  + ++   +
Sbjct: 579 EEAVQKYCRDILSRLFELQITRVKADKMGQLQRLDPAADPETYQRLNRELMMLEMERRSL 638

Query: 632 ESQ 634
            ++
Sbjct: 639 RAE 641


>gi|291541029|emb|CBL14140.1| DNA primase [Roseburia intestinalis XB6B4]
          Length = 610

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/624 (24%), Positives = 258/624 (41%), Gaps = 34/624 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y  D I+++     I ++I QYV   ++ +      Y+  CPFH+EKT SF  + +K  Y
Sbjct: 4   YSDDIIEEVRSRNDIVDVISQYVRLSKKGS-----TYFGLCPFHNEKTGSFSVSPNKQMY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
           YCF C   G+  +FL      +F E+++ LA  AGV LP  +    ++++   +  L+ +
Sbjct: 59  YCFGCGAGGNVFTFLMEYENFTFGEAMEALADRAGVELPKQEYTSAQRQEADKRARLLEI 118

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A  +F+  L+  R  R   Y  +R +    ++ F LGY+      L  +LR+KG+ +
Sbjct: 119 NKEAAKYFYMLLRGERGARALSYFRKRELSDETMQKFGLGYSDQYSDDLYRYLRKKGYED 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + + E+GL +  D     YD+F NR +FPI     +VI FGGR +      KYLNSPET 
Sbjct: 179 DILKESGL-VSIDERRGGYDKFWNRAMFPIMDVHNKVIGFGGRVM-GDGEPKYLNSPETK 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K +NLY    A                   ++L EGYMDV++L QAG  N V+SLGT
Sbjct: 237 IFDKSRNLYGLNFAR------------STKKPQLLLCEGYMDVIALHQAGFDNAVASLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT     LL + +  + L +D D  G++AA +AI +       G     + +   +DPD
Sbjct: 285 ALTSGHANLLKRYTKNVYLTYDSDGAGVKAALRAIPI---LKEVGITTKVINMKPYKDPD 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FI+  G   ++K I  +        +   +    + P+ + +    +   +    ++  
Sbjct: 342 EFIKALGAEEYQKRIDTAENSFMFEIRILEQQYDMHDPESKTKFYNAVAEKLCTFGEKLE 401

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y  A+ D+     +      + YG      A           L +    + K     
Sbjct: 402 RDNYIAAVADKYMIGIEDLRRLVNQYGAKIGMAAGGAPPVRERSELRREQGSEKKKENGM 461

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              +  LL  LI H  +  +  + ++   +      K    L+  +       P +I   
Sbjct: 462 IQSQKLLLTWLIEHTGLFPKIEKYISPEDFTEEIYHKAAEILYEQYRNTGTVNPAKIVSM 521

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEA---NIVDVRQGYQQALALYKR---FRLLSRQ 594
                    +  L              E    +     +  ++ +   K+      L   
Sbjct: 522 FQNEEEQREIAGLFHATIRGVETEGDKENGGYSKETFEKALKETIVRVKQNSIEYHLKNM 581

Query: 595 ----KEEIEKQIAQVTAKGEAEKT 614
                  +++ +A   A  E EK 
Sbjct: 582 APTDMAALQRSVADKKALEELEKV 605


>gi|223598|prf||0902269A primase dnaG
          Length = 580

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 176/630 (27%), Positives = 291/630 (46%), Gaps = 57/630 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLINARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL+         YLD+RG+    I  F L   P +   L+         
Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLDKRGLSHEVIARFGLVLRPPAGQRLKRFGGNPENR 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  I    L+   ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 QSLIDAGMLV--TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 235

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV+++ Q G+   V+SLG
Sbjct: 236 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVAVAQYGINYAVASLG 285

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 286 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 345

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  + 
Sbjct: 346 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 405

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +             A       P  +L ++++        
Sbjct: 406 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 450

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       + L + +     L  L+  L +  + Q      ++
Sbjct: 451 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 502

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +          L++L        +W    + NI    Q +  +L  +    LL  ++EE
Sbjct: 503 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 552

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  +  + T     E+   L ++  E+  +
Sbjct: 553 LIAR--ERTHGLSNEERLELWTLNQELAKK 580


>gi|262401782|ref|ZP_06078348.1| DNA primase [Vibrio sp. RC586]
 gi|262352199|gb|EEZ01329.1| DNA primase [Vibrio sp. RC586]
          Length = 587

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 170/631 (26%), Positives = 282/631 (44%), Gaps = 65/631 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI  LL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDGLLARLDIVDVIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---------PKIEKKEKI 113
           +CF C   G+ + F+       F E+++ LA+  G+ +   +              K + 
Sbjct: 60  HCFGCGAHGNAIDFVMEFERMEFPEAIEELASTVGLEVEREERTPSSPFAKNTPTVKSEE 119

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+   LK   +K    YL  RG+    ++ F +GY  D    +R + 
Sbjct: 120 KRSLYDLMGSIAQFYRQQLKITANKHAIDYLKNRGLSGEIVQKFGIGYVADEWDLVRRNF 179

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  SE+ ++ AG+LI+ DN    YDRFR R++FPIR  RG+VI FGGR +++  + KY
Sbjct: 180 GQQRSSEDMLVTAGVLIESDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKGK LY  +  L   +              I++VEGYMDV++L Q GV  
Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYR----------EPPQILVVEGYMDVVALAQYGVDY 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   L+LL++ + ++V C+DGD  G  AA++A++  L +L  GN + F+ L
Sbjct: 288 SVASLGTSTTGDHLQLLFRQTNQVVCCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411
             GEDPDS++R YGK  FE+ +  + PL   L+    E    N  + + ++ L       
Sbjct: 348 PDGEDPDSYVRKYGKADFEQQLANATPLSQYLFDNLIELHQLNLGSHEGKSALRALATPL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I+ I D  L+    + + +R    F   +          +       ++ P         
Sbjct: 408 IDKIPDPFLQEILEKLLDERTG--FDHQLRRKKARNSENRPAPHKAIKRTPM-------- 457

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          ++  L+ +P+  +      +        L   +S +     +  +
Sbjct: 458 -------------RDVIALLVQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 503

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++ +         LL +L        +     E  +  + +   Q +         
Sbjct: 504 ITTGQLLEHWRNSKNEALLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 553

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
            +Q E ++   A+  + G + +    +  L 
Sbjct: 554 EKQIENLQ---AKARSVGLSTEERRELQDLI 581


>gi|270263178|ref|ZP_06191448.1| DNA primase [Serratia odorifera 4Rx13]
 gi|270042866|gb|EFA15960.1| DNA primase [Serratia odorifera 4Rx13]
          Length = 582

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 174/630 (27%), Positives = 284/630 (45%), Gaps = 53/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDRLEFVETIEELATMHGLEVPYEAGTGPTQIERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+  SL          YL +RG+    I  F +G+AP    +  +   +   +
Sbjct: 119 LMEQLSTFYQQSLHQPSGTPARNYLQQRGLSDDVIRHFAIGFAPAGWDNALKRFGRDADT 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  ++   SYDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RLALNDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGMPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A        R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EVFHKGRQLYGLYEAQQNHPTPQR----------LLVVEGYMDVVALAQYGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRATDNVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ +  + PL   L++        ++PD RA+L       I  +  + 
Sbjct: 347 DTLVRKEGKDAFEQRMELAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLITQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q +  +L  L    + +            +    K  +                
Sbjct: 407 LRLYLRQQLGSKLGLLDDSQLDKLMPKQAENANTYQAPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +       L  +         L+  L    + Q      ++ +
Sbjct: 452 -----RILIGLLVQNPQLA-TLIPSLEGLEQTKQAGLPLFVELVQTCLAQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           +  +    + L+ L     +  +     E   +D       ++        L ++ E + 
Sbjct: 506 QYRDNKLSQQLETLATW--NHMIVEDRVEQTFLDTLASLYDSV--------LEQRLETL- 554

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             IAQ    G + +    +  L++V  + +
Sbjct: 555 --IAQARTHGLSPEEREEVRSLNQVLAKKN 582


>gi|89075586|ref|ZP_01161991.1| DNA primase [Photobacterium sp. SKA34]
 gi|89048726|gb|EAR54298.1| DNA primase [Photobacterium sp. SKA34]
          Length = 585

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 167/623 (26%), Positives = 278/623 (44%), Gaps = 53/623 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DL+    I ++I   V   ++  N     + ACCPFH+EKTPSF  +  K F
Sbjct: 4   KIPRSFIDDLISRHDIVDVIDARVKLKKQGKN-----FGACCPFHNEKTPSFSVSQEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117
           Y+CF C V G+ L F+       F+++++ LA+  G+ +P  +         K   + + 
Sbjct: 59  YHCFGCGVHGNVLDFVMEFDRLDFVDAIEELASQLGLEVPRENDGNNTHRGPKVADKRNY 118

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             L+   + F+   L+    +    YL  RG+    ++ F +G+ PD    +R    +  
Sbjct: 119 YELMGQVSQFYQSQLRTKEGEIAVDYLKGRGLSGEIVKKFSIGFIPDQWDMVRSRFGRDN 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S++ ++  GLLI+ DN    YDRFR R++FPI   RG+VI FGGR L    + KYLNSP
Sbjct: 179 ESQKALVNTGLLIENDNGRR-YDRFRGRVMFPIHDRRGRVIGFGGRVL-GDGTPKYLNSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHKG+ LY F+  L   ++  R          I++VEGYMDV++L Q GV   V+S
Sbjct: 237 ETDIFHKGRELYGFYEVLQTHREPKR----------IMVVEGYMDVVALAQFGVDYAVAS 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGT+ T   ++ L++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L  GE
Sbjct: 287 LGTSTTGDHIQSLFRQTSTVVCCYDGDRAGRDAAWRAMEQALPYLTDGRQLKFMFLPDGE 346

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS IR  GK  FE+ + E++PL + L+          + + +A+L       I+ +  
Sbjct: 347 DPDSCIRAEGKNVFEQRVDEAMPLSEFLFNSLMRQVDTTSREGKAKLSTLAVPLIDKVPG 406

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             LR Y  + +   L    +  + +         K       K                 
Sbjct: 407 GTLRLYLRELLGKNLGLPDEAQLQQLISMHGKTSKTVGQVQIKRTPM------------- 453

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ--KLWSFLFSDFVEQKYFLPE 535
                    ++  LI HP  + +   E     ++N EL    L   +             
Sbjct: 454 -------REVIALLIQHPNFVTQL--EFDMSAFENIELSGLNLLLSIVDKCRSNPNISTG 504

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ +          + +L   V            +  +    +  A+        + +Q 
Sbjct: 505 QLLEHWRGTKNEATMARLAAWVLPLS-------KDEDNSLDVFLDAMDNIIDQ-CVKQQI 556

Query: 596 EEIEKQIAQVTAKGEAEKTAILI 618
           E+++ +   V    E ++   L+
Sbjct: 557 EQLQTKSRTVGLSVEEKQELQLL 579


>gi|169829159|ref|YP_001699317.1| DNA primase [Lysinibacillus sphaericus C3-41]
 gi|168993647|gb|ACA41187.1| DNA primase [Lysinibacillus sphaericus C3-41]
          Length = 610

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/636 (22%), Positives = 278/636 (43%), Gaps = 39/636 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+ +     I ++I +Y+   +R  N     ++  CPFH E+TPSF  +  K  
Sbjct: 8   KIPEEVIEQIRTQSDIVDVISEYMQLTKRGRN-----WFGLCPFHGEQTPSFSVSSDKQI 62

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   G+ ++F+  + G SF ++V +L   AG+ L   P      +K  K +  + 
Sbjct: 63  FHCFGCGAGGNAITFVMDIEGISFPDAVVKLGERAGIHLDVEPTFPGGTKKISKAEERMK 122

Query: 119 RLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
                  DFFHH  L     +    YL ERG     IE   +G++  S  +L   L +KG
Sbjct: 123 EAHAFTADFFHHLLLNTEDGEEPLNYLLERGFTRELIESNNIGWSLPSFDALTILLERKG 182

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNS 236
           ++ +++ E+GL+I  +     +DRFR R++FPIR   G++IAF GR L S GE  KYLNS
Sbjct: 183 YNLQEMAESGLIIKREGEERYFDRFRGRIMFPIRDENGKIIAFSGRILSSTGEEAKYLNS 242

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ +F K + LYN   A   ++K          +  ++L+EG+MDVL+    GV N V+
Sbjct: 243 PESPIFQKSEVLYNLDKARTSIRK----------NRQVVLMEGFMDVLAANSVGVMNAVA 292

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT+LT   +  L +L  ++ +C+DGD+ G  AA +A  L         +V+  +L   
Sbjct: 293 TMGTSLTNQHITKLKRLVEQVTICYDGDNAGFDAAKRAAQL---LHTERMKVDIAVLPEK 349

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPD +IR  G  AF++ ++      +  +      N++F   ++  +    +   +   
Sbjct: 350 LDPDEYIRTLGGQAFKEQILENPHAYIAFMMMHARRNKNFQFENDTLQYIQEVLEQLTGR 409

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                R  Y + + +      +    +         ++A+    + P+Q        + K
Sbjct: 410 SSPVERDLYIRQLSNETNISEEAIYAQFRKLEANQVRSAK---PEMPTQMPSMPVTQQQK 466

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E  LL  ++++  ++    +      +  +    ++  L   + E  +   +
Sbjct: 467 PMDAAERAERLLLAHMLHNIDVVDRVLRSEQKEPFVRDAYMAVFVRLVGFYEEYGHPDYQ 526

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
              + L +    +++           + +A  E +          ++   +++R + ++ 
Sbjct: 527 RFMEILDDAELRKIV-----------MEAALVERDPDQAEAEVVDSIRQLQKYR-IEQEI 574

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            +   +  +     E  +   +   +  +   +  I
Sbjct: 575 YQKMHESKEAEKMHEYARALEIAQQIIHLRKSLSAI 610


>gi|260588572|ref|ZP_05854485.1| DNA primase [Blautia hansenii DSM 20583]
 gi|260541047|gb|EEX21616.1| DNA primase [Blautia hansenii DSM 20583]
          Length = 594

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/614 (25%), Positives = 266/614 (43%), Gaps = 44/614 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  D I+++     I ++I  YV   R+ +      Y+  CPFH+EK+PSF  +  K 
Sbjct: 1   MYYSDDLIEEVRSKNDIVDVISDYVKLQRKGS-----SYFGLCPFHNEKSPSFSVSPGKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+  +F+      SF+E+++ LA  AGV LP      + +     ++ L+
Sbjct: 56  MYYCFGCGAGGNVFTFIMEYENYSFVEALKYLADRAGVQLPEVEYSKEAKAASDFKSMLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + + A  F+++ LK    K    YL  R +    I+ F LG +P    +L ++L+ +G+
Sbjct: 116 EIQKKAASFYYYQLKQESGKPALDYLKGRQLSEDTIKKFGLGCSPRYSGALYQYLKGQGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S+E + E+GL           D+F NR++FPI     +VI FGGR +      KYLNSPE
Sbjct: 176 SDELLKESGLFNID-ERRGMQDKFWNRVMFPIMDVNNRVIGFGGRVM-GDAKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K +NLY    A              +   + I+ EGYMDV+++ QAG  N V+SL
Sbjct: 234 TKIFDKSRNLYGLNIAR------------TSRKPYFIICEGYMDVIAMYQAGFHNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     L+ + +  ++L +D D+ G +AA + I +       G     V L+  +D
Sbjct: 282 GTALTSGHASLMSRYTKEVLLTYDSDEAGQKAALRGIPI---LKAAGISPRVVNLAPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  GK AFEK + E+        K   +    + P+ + +    +   +    ++
Sbjct: 339 PDEFIKAEGKEAFEKRLEEAENYFLFEIKVLEKQYHLSDPESKTQFYREIARKLLEFPEE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y ++I  R Q  F+      +         A          R+   S  K     
Sbjct: 399 LERNNYIESISARYQIKFEDLRRMVNNMALSGTGVAVK-------PRMEAVSKKKEGKED 451

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  +L  L ++P++ +     +    +      K+   +F    E     P ++ 
Sbjct: 452 AGHTAQKLMLTWLSSYPSMFKTIDGLIEPADFTTPLYHKVAEIVFEQHKEG-EVNPAKLL 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL------------YK 586
            R  +    + +  L              +A +  V +  + ++A              +
Sbjct: 511 NRFSDAEEQKEITSLFHASLHLESEEDAKKAVLETVCRLKRDSIAWQSTNLPPTDLFGLQ 570

Query: 587 RFRLLSRQKEEIEK 600
           R     ++ E++E+
Sbjct: 571 RIVEARKRLEDLER 584


>gi|227503146|ref|ZP_03933195.1| DNA primase [Corynebacterium accolens ATCC 49725]
 gi|227076207|gb|EEI14170.1| DNA primase [Corynebacterium accolens ATCC 49725]
          Length = 639

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 136/653 (20%), Positives = 255/653 (39%), Gaps = 52/653 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +    P+  ++G+YV                  PF DEKTPSFH    +G+
Sbjct: 5   RIPDSDIQAIRERAPLEEIVGEYVQLKPAG----HDSLKGLSPFKDEKTPSFHVRPQRGY 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118
           Y+CFS    GD  SFL  +   SF E+V+ +A   G  +         + +    +  LI
Sbjct: 61  YHCFSTGKGGDVFSFLMEMEQVSFPEAVEAVAQKIGYHINYQGGSTGARNEKPGTRQRLI 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              +   +F+   L+         +L +RG     I  F+ GYAP+   +  +HL + GF
Sbjct: 121 AANKAVHEFYRKQLETPEAATARNFLLDRGFSREVIYDFECGYAPEGWDTATKHLLRMGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           S E++  AG  I         DRF  RL++PI+   G VI FG R L   +   KY+N+P
Sbjct: 181 SFEELEAAG--ISKMGKRGPIDRFHRRLLWPIKDLSGNVIGFGARKLFDDDKLGKYMNTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+HK K L+    A   +                ++VEGY DV+++  AG++  V+S
Sbjct: 239 ETMLYHKSKVLFGLDLAKRNIA----------EGHQAVVVEGYTDVMAMYAAGIKTAVAS 288

Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA     L++L             ++  FDGD+ G +AA +A +          +   
Sbjct: 289 CGTAFGGEHLQVLRRLMLDDSYFHGELIYTFDGDEAGQKAAMRAFE---GEQKFTGQSFV 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G  A   L+ + +P+ + + +    +   +T + R +       
Sbjct: 346 SVAPDGMDPCDLRLEKGDAAVRDLVADRIPMFEFVIQSVIADFRIDTAEGRLQALRRAVP 405

Query: 411 CINHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
            +  I+DQ L+  Y++ +   +      ++ ++   E     +  K   R  D   P   
Sbjct: 406 IVAQIRDQPLQREYARRLAGWVGWNDPEEVLRQVRAEAKKPKKADKPTIRRFDNAQPQPA 465

Query: 466 LMQSSLVKGKLSKKPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                ++     K+  L  +   L   +  P ++   +  +    Y N+  + +   + +
Sbjct: 466 QQDVPMIHPPSPKETHLWPQREALKLALQMPEVVGSYFDGITADAYTNDAYRIVRQAISA 525

Query: 525 DFVEQKYFL------PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
               +K            +   + +      + +L  +        A          + Y
Sbjct: 526 VGGAEKGATMSGVDWIAAVAGEMQDLTGRNFVSELAVEAILPTDVGA----------EKY 575

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             ++    +  ++  Q  +++ Q+ ++    +      L + L  +     ++
Sbjct: 576 ADSVLSRLQETVVGDQIAQLKAQLGRMRPTDDEAGYNSLFADLIALEQARREL 628


>gi|312898763|ref|ZP_07758152.1| DNA primase [Megasphaera micronuciformis F0359]
 gi|310620194|gb|EFQ03765.1| DNA primase [Megasphaera micronuciformis F0359]
          Length = 610

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 164/620 (26%), Positives = 280/620 (45%), Gaps = 41/620 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +  +FI+ +     I ++I  Y    RR        +WACCPFH+EKT SF     KG
Sbjct: 3   MKFSHEFIEQVRQANDIVSVISDYAGLKRRGNK-----FWACCPFHNEKTASFTVTAEKG 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLI 118
            YYCF CH  GD   FL A    SF E+V+RLA  AG+ +P  +   E  K+++ +  L 
Sbjct: 58  LYYCFGCHASGDVFKFLMAKENISFAEAVRRLAERAGLQVPEEERSAEDIKRDEARKRLY 117

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           ++ E+A  FFH+ L K    +    YL +RG+    I  F+LG+APDS   L +    KG
Sbjct: 118 KINEMACAFFHNCLVKTRYGEEGKAYLRKRGLSEQTIRDFRLGFAPDSWNKLTDAFAAKG 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            + ++++E GL  + +     YD FR R+IFPI   R +V+ FGGR L      KYLNSP
Sbjct: 178 VAGKELVELGLAKEKNG--RFYDAFRKRVIFPIYDGRDRVVGFGGRVL-DDSKPKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +F+K   L+    A   +    R           +LVEGYMDV+S    G+ NVV+S
Sbjct: 235 ETPIFNKRNLLFALNRAHRSIYDEGRA----------VLVEGYMDVVSAHNKGITNVVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA TE Q RLL + +  ++L +D D  G +A  +A+++V      G  +  ++L+ G+
Sbjct: 285 LGTAFTERQARLLQRQAKELILAYDMDTAGRQATLRAMEIVRSL---GLHIRVLVLADGK 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +I  +G  AF++ +  +  +++ +     +    +T + ++ +   +   +     
Sbjct: 342 DPDEYINAHGPDAFKEALQAAPGVLEYMLLTALKEYDADTLEGKSSITASVMPALVQTDS 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             +   +   + +RLQ       +E++ Y R   +  R   Q       +       +  
Sbjct: 402 AVVADAFMAKLAERLQIDENAVRSEYNAYVRRHPEAGR---QPVVISTNVVKQTESARRG 458

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              ++ E  +L +L+ HP        ++    + +   + ++  +   + +   +    +
Sbjct: 459 STTAVAEENILRSLLEHPESYGRIEDKMEASYFVDPVRRSIFEEIHRQYTQTGGYSVSSV 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            + L   G  E  + L                      +       L  + + L    +E
Sbjct: 519 REGLSTEGEAETARILMSDEVPMD--------------EQVLLDYVLRFKLQALQNDYKE 564

Query: 598 IEKQIAQVTAKGEAEKTAIL 617
              + A+ + + +      L
Sbjct: 565 HSARAAEYSIRNDLRLKDEL 584


>gi|291536630|emb|CBL09742.1| DNA primase [Roseburia intestinalis M50/1]
          Length = 610

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/624 (24%), Positives = 258/624 (41%), Gaps = 34/624 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y  D I+++     I ++I QYV   ++ +      Y+  CPFH+EKT SF  + +K  Y
Sbjct: 4   YSDDIIEEVRSRNDIVDVISQYVRLSKKGS-----TYFGLCPFHNEKTGSFSVSPNKQMY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
           YCF C   G+  +FL      +F E+++ LA  AGV LP  +    ++++   +  L+ +
Sbjct: 59  YCFGCGAGGNVFTFLMEYENFTFGEAMEALADRAGVELPKQEYTSAQRQEADKRARLLEI 118

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A  +F+  L+  R  R   Y  +R +    ++ F LGY+      L  +LR+KG+ +
Sbjct: 119 NKEAAKYFYMLLRGERGARALSYFRKRELSDETMQKFGLGYSDQYSDDLYRYLRKKGYED 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + + E+GL +  D     YD+F NR +FPI     +VI FGGR +      KYLNSPET 
Sbjct: 179 DILKESGL-VSIDERRGGYDKFWNRAMFPIMDVHNKVIGFGGRVM-GDGEPKYLNSPETK 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K +NLY    A                   ++L EGYMDV++L QAG  N V+SLGT
Sbjct: 237 IFDKSRNLYGLNFAR------------STKKPQLLLCEGYMDVIALHQAGFDNAVASLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT     LL + +  + L +D D  G++AA +AI +       G     + +   +DPD
Sbjct: 285 ALTSGHANLLKRYTKNVYLTYDSDGAGVKAALRAIPI---LKEVGITTKVINMKPYKDPD 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FI+  G   ++K I  +        +   +    + P+ + +    +   +    ++  
Sbjct: 342 EFIKALGAEKYQKRIDTAENSFMFEIRILEQQYDMHDPESKTKFYNAVAEKLCTFGEKLE 401

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y  A+ D+     +      + YG      A           L +    + K     
Sbjct: 402 RDNYIAAVADKYMIGIEDLRRLVNQYGAKIGMAAGGAPPVRERSELRREQGSEKKKENGM 461

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              +  LL  LI H  +  +  + ++   +      K    L+  +       P +I   
Sbjct: 462 IQSQKLLLTWLIEHTGLFPKIEKYISPEDFTEEIYHKAAEILYEQYRNTGTVNPAKIVSM 521

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEA---NIVDVRQGYQQALALYKR---FRLLSRQ 594
                    +  L              E    +     +  ++ +   K+      L   
Sbjct: 522 FQNEEEQREIAGLFHATIRGVETEGDKENGGYSKETFEKALKETIVRVKQNSIEYHLKNM 581

Query: 595 ----KEEIEKQIAQVTAKGEAEKT 614
                  +++ +A   A  E EK 
Sbjct: 582 APTDMAALQRSVADKKALEELEKV 605


>gi|157148638|ref|YP_001455957.1| DNA primase [Citrobacter koseri ATCC BAA-895]
 gi|157085843|gb|ABV15521.1| hypothetical protein CKO_04465 [Citrobacter koseri ATCC BAA-895]
          Length = 581

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 167/629 (26%), Positives = 293/629 (46%), Gaps = 54/629 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIIDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLDFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SL +   +    YL +RG+ +  ++ F +G+AP    +  +       +
Sbjct: 119 LMDGLNAFYQQSLAHPTAEPARQYLQKRGLSAEIVQRFAIGFAPPGWDNALKRFGNNSDN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              +++AG+L+  ++   +YDRFRNR++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RALLLDAGMLV-NNDQGRTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  +  +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQHNAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   + +L++ +  ++ C+DGD  G  AA++A++  + ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYITDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++LPL   L+         +TPD   +L       IN +    
Sbjct: 347 DTLVRKEGKEAFEARMEQALPLSLFLFNSLLPQVDLSTPDGSTQLAALALPLINQVPGDT 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    Q +  +L       +                     P+ +L ++++        
Sbjct: 407 HRIQLRQMLGLKLGIFDDSQLDRL-------MPKQAESGTVRPAPQLKRTTM-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +           +     L  L+  L +  + Q      ++ +
Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLGGLDQKKLPGLG-LFEELVNTCLSQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                     L++L        +W    + +I    + +  +L  +    +L  ++EE+ 
Sbjct: 506 HYRGTNSAATLEKL-------SMWDDIADKDI--AEKTFTDSLN-HMFDSMLKLRQEEL- 554

Query: 600 KQIAQVTAKG-EAEKTAILISILHEVHIQ 627
             IA+    G   E+   L ++  E+  +
Sbjct: 555 --IARDRTHGLSNEERRELWTLNQELAKK 581


>gi|308188145|ref|YP_003932276.1| DNA primase [Pantoea vagans C9-1]
 gi|308058655|gb|ADO10827.1| DNA primase [Pantoea vagans C9-1]
          Length = 581

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 176/620 (28%), Positives = 284/620 (45%), Gaps = 54/620 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA   G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNFDRLEFVESIEELATSHGLDVPYEAGSGPSQMERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E    F+   L+ +  +    YLD RG+ +  I  F +GYAP    ++ +   ++   
Sbjct: 119 LMENLNGFYQQGLQQSSAQPARDYLDRRGLSADIINHFAIGYAPAGWDNVLKRFGKQSED 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            E ++EAG+L+  D    +YDRFR+R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RESLMEAGMLVSNDKG-RTYDRFRDRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A+    +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 PIFHKGRQLYGLYEAVKNHPEPAR----------LLVVEGYMDVVALAQYGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         ++ D +A L       I  I  + 
Sbjct: 347 DTLVRKEGKAAFEARMEQAMPLSSFLFDSLLPQVDLSSRDGKARLSTLALPLITQIPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +           +       P +R              
Sbjct: 407 LRIYMRQELGNKLGILDDNQLEKL----MPKLAASGTAPVAPPLKRTTM----------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  LI +P +                 L  L+  L     E       ++ +
Sbjct: 452 -----RVLVALLIQNPQLATLVPSLDGLSESKMPGL-PLFVELVGRCTENPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                 F + L+ L   + +  +     EA   D       +         L  +   +E
Sbjct: 506 LYRGTNFSQTLETLA--IWNHMIVDEEAEAVFQDSLASIYDS--------ALEER---LE 552

Query: 600 KQIAQVTAKG-EAEKTAILI 618
             IA+   +G  A++   L 
Sbjct: 553 FLIARERTQGLSADERRELW 572


>gi|239979291|ref|ZP_04701815.1| DNA primase [Streptomyces albus J1074]
          Length = 625

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 147/645 (22%), Positives = 265/645 (41%), Gaps = 45/645 (6%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  + +KG ++CF C   
Sbjct: 4   VRDAVPIDAVVSEYLSL----RNAGGGNLKGLCPFHDEKSPSFQVSPAKGLFHCFGCQEG 59

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRLIEVATDFF 128
           GD ++F+  +   +F E+V+RLAA AG+ L   +       +   +  LI   + A +F+
Sbjct: 60  GDTITFVRKVDHLTFSEAVERLAAKAGITLRYEEGGYNPSHQRGERIRLIEAHKAAAEFY 119

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
              L     +    +L ERG D  A   F +GY+P     L  +LR +GF+++++I +GL
Sbjct: 120 AKQLDGPEAETGRRFLAERGFDQAAATHFGIGYSPVGWDHLTRYLRGQGFTDKELITSGL 179

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGKN 247
               D      DRFR RL++PIR   G+V+ FG R L + ++  KYLN+PET ++ K + 
Sbjct: 180 A--QDGRRGPVDRFRGRLMWPIRDIGGEVVGFGARRLREDDNGPKYLNTPETPIYRKSQV 237

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           LY    A   + K+ R           ++VEGY DV++   AG+   V++ GTA  +  +
Sbjct: 238 LYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGITTAVATCGTAFGQDHI 287

Query: 308 RLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           ++L +L       R++  FDGD  G +AA +A +               +   G DP   
Sbjct: 288 KILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIAPDGMDPCDL 344

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
               G  A   L+    PL +   ++        TP  RA         +  IK    ++
Sbjct: 345 RLAKGDEAVADLVEPRTPLFEFALRQIVSRYDLETPAGRAAALDEAGPVVARIKSASSQH 404

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP----------SQRLMQSSLV 472
             +  +   L  L  +++    G    W ++        P               + S  
Sbjct: 405 EVAVQLAGMLGILDTQFVVRRIGQLARWARDRGSDAGPAPRRADVAGHAVETSAPRFSGP 464

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
              L       E  LL   +  P ++   +       +       +   +      +   
Sbjct: 465 ALNLRSPAFTTERELLKLALQRPELVSPAFDAYGSDEFTAAPYAAVREAIEEAGGAELGA 524

Query: 533 LPE-EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               +   R+ E    + ++ +  ++    +   T +       + Y     +  R R +
Sbjct: 525 DLGMDYLTRVREAAPDDTVRAMVTELAVEAIRRRTVD-------EVYAGEQLVKVRLRAV 577

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            R+  +++    +V A+G+  + A + + L  +      + +  A
Sbjct: 578 ERRIRDLQGTFTRVAAQGDQTQLASVQNELWVLQQYDRSLRNNGA 622


>gi|197286217|ref|YP_002152089.1| DNA primase [Proteus mirabilis HI4320]
 gi|227357333|ref|ZP_03841690.1| DNA primase [Proteus mirabilis ATCC 29906]
 gi|194683704|emb|CAR44683.1| DNA primase [Proteus mirabilis HI4320]
 gi|227162596|gb|EEI47585.1| DNA primase [Proteus mirabilis ATCC 29906]
          Length = 582

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/633 (26%), Positives = 292/633 (46%), Gaps = 58/633 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N       ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRSFINDLLARTDIIDLIDARVPLKKQGKNHS-----ACCPFHNEKTPSFTVNSDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+++ LAA+ G+ +P          +  I+ +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLDFVETIEELAAMHGLEVPYESGTGSSPIERHIRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           ++E    ++  +L     +    YL  RG+    I  F +G+ P    ++ +   Q   +
Sbjct: 119 VMEKLNQYYKSTLNTPDAQEARNYLAHRGLSEEVITRFSIGFVPTGWDNILKRFGQNPDN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  ++EAG++I  ++   +YDRFR R++FPIR  RG+VIAFGGR L   +  KYLNSPET
Sbjct: 179 QALLLEAGMVI-TNDKGRTYDRFRQRVMFPIRDRRGRVIAFGGRVL-GDDLPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A +      +          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEAQHTHPNPAK----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L  L  G  + F+ L  G+DP
Sbjct: 287 TSTTAEHIQLLFRTTDNVICCYDGDRAGRDAAWRALETALPFLNDGRSLRFMFLPEGDDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS +R  GK AFEK + ++  L + L+         +T +   +L    +  I+ I  + 
Sbjct: 347 DSLVRREGKEAFEKRMEQAHSLSEFLFDSLVPQVDLSTQEGNGKLYSLARPLIDQIPSET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  + + +           +     R + +N+ H +      +L  + +        
Sbjct: 407 LRLYLLRELGNLTG------NPDIEQMDRLFGRNSLHHETSYQPTKLRTTPM-------- 452

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  LI +P   Q     + L   +        L+  L S    Q      +I
Sbjct: 453 -----RILIALLIQNPEFCQLVPPLEGLNTEKIAG---LSLFIELVSLCQAQPGLNTGQI 504

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +   E  FG+ L++L              + +I ++ +        +     +  +   
Sbjct: 505 IELYRENKFGKQLEKLAMW----------NDIDIDEIAEKTFTDTLDHLFLTAMDERLNA 554

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +   IA+   +G  +     + ++  +  ++ +
Sbjct: 555 L---IAKERTEGLTQNEREEVQLI--IQARVKK 582


>gi|193213161|ref|YP_001999114.1| DNA primase [Chlorobaculum parvum NCIB 8327]
 gi|193086638|gb|ACF11914.1| DNA primase [Chlorobaculum parvum NCIB 8327]
          Length = 632

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 174/646 (26%), Positives = 292/646 (45%), Gaps = 40/646 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+  I ++     I +++  YV  +          + A  PF  EKTPSF  +  K  Y
Sbjct: 2   IPQRMIDEVRQSSDIVDIVSDYVRLNPSGR-----HFKALSPFTQEKTPSFIVSPDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-PKIEKKEKIQTDLIRLI 121
            CFS    G+  +F+  +   +F E+V+ LA  AGV        K ++++K +++    +
Sbjct: 57  KCFSSGKGGNVFTFIMEMEKVTFPEAVEMLAKRAGVDTSKYQLQKAQQEDKQESNQHETL 116

Query: 122 EVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             A   FH +L++        Y + +RG+++  I  F LG+AP++   L +  R+     
Sbjct: 117 RWAARLFHQTLESDAGRAAYAYLVGKRGLEASTIRKFGLGFAPEAWEFLLDAARRDNIPV 176

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239
           E++   GL+       + YD FRNR+IFPI +  GQV  FGGRTLS   ++ KY+NSPE+
Sbjct: 177 EQLTALGLVTRHRERNSLYDTFRNRIIFPILTVGGQVAGFGGRTLSNDPQTPKYINSPES 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K K LY    A N ++K              ILVEGYMDV+++ QAGV N V+S G
Sbjct: 237 AIFEKSKLLYGMHAAKNDIRKQ----------ETAILVEGYMDVIAMHQAGVTNTVASSG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALT YQ ++L + + R++  +DGD+ G ++    ID++L     G     VLL  G+DP
Sbjct: 287 TALTRYQAKILKRYTSRVLFLYDGDNAGKKSMLAGIDILLSE---GLTPWVVLLPGGDDP 343

Query: 360 DSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           DSFIR YGK AF E+L  E     D   +   +      PD  ++    +   I  I D 
Sbjct: 344 DSFIRNYGKEAFLEELESEKSSFQDFQLRCYRDAGLMENPDTASKAISAMTKSIALIADP 403

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +  Y + +  +L    Q                A   + +GPSQ+  +SS      ++
Sbjct: 404 VQKELYLEELSKKLDLSRQTLR---KVMASSNDDRAPRYESRGPSQQ--KSSPEVKADNR 458

Query: 479 KPSLREAALLLTLINH----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QK 530
             S+ E   L  L+        +L       +    ++   + +++ L   F E    + 
Sbjct: 459 PISVAERTFLEALLESTFYGNEVLDFAASHESMFTLEHPAARAIFTHLVERFREMDDKEG 518

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--F 588
           +         L       +   +  ++  +     + +      R+     L   K    
Sbjct: 519 HIDITSEISSLGLEEARNIALDILFRLPVSETNLPSPQEAAQHARRCLSHFLVAVKTIVL 578

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             L RQK++I   + ++ +  E  +   L + LH+++ Q+ ++E +
Sbjct: 579 EPLQRQKQDI---LNRLNSTSEKPEEKKLFAQLHDINNQLREMEQE 621


>gi|296333321|ref|ZP_06875774.1| DNA primase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675174|ref|YP_003866846.1| DNA primase [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296149519|gb|EFG90415.1| DNA primase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413418|gb|ADM38537.1| DNA primase [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 606

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/572 (26%), Positives = 270/572 (47%), Gaps = 27/572 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + +  +     I  +IG YV   ++  N     Y+  CPFH E TPSF  +  K  
Sbjct: 4   RIPDEIVDQVQKSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLI 118
           ++CF C   G+  SFL  + G SF ESV  LA    +  P    V      +   +  + 
Sbjct: 59  FHCFGCGAGGNVFSFLRQMEGYSFAESVSHLADKYQIDFPDDITVHSGARPESSGEQKMA 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              E+   F+HH L      +    YL  RG     I+ F++GYA DS   + + L ++G
Sbjct: 119 EAHELLKKFYHHLLINTKEGQEALDYLLSRGFTKELIDEFQIGYALDSWDFITKFLVKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           FSE ++ +AGLLI  ++ +  +DRFRNR++FPI    G V+AF GR L   +  KY+NSP
Sbjct: 179 FSEAQMEKAGLLIRREDGSGYFDRFRNRVMFPIHDHHGAVVAFSGRAL-GSQQPKYMNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LFHK K LYNF+ A  +++K  R           +L EG+ DV+S   +GV+  +++
Sbjct: 238 ETPLFHKSKLLYNFYKARLHIRKQERA----------VLFEGFADVISAVSSGVKESIAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT+LT+  +++L +    I+LC+D D  G  A  KA DL       G +V   ++  G 
Sbjct: 288 MGTSLTDDHVKILRRNVEEIILCYDSDKAGYEATLKASDL---LQNKGCKVRVAMIPDGL 344

Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD +I+ +G   F+  +I  S+ ++    +   + ++ +   +R      +   I+ + 
Sbjct: 345 DPDDYIKKFGGEKFKNDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYIKDVLKEISTLS 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK--NARHRDQKGPSQRLMQSSLVKG 474
               +  Y + +        +    + S + +  K   NA +  +    +  + +   + 
Sbjct: 405 GSLEQEVYVKQLASEFSLSQESLTEQLSVFSKQNKPADNADNGGETKTRRAHLTTKARQK 464

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L       E  LL  ++   +++++    +   +++ +E + L ++L++ + E     P
Sbjct: 465 RLRPAYENAERLLLAHMLRDRSVIKKVIDRVG-FQFNIDEHRALAAYLYAFYEEGAELTP 523

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           + +  R+ +    +LL  +     +  L  A 
Sbjct: 524 QHLMARVTDDQISQLLSDILMLQINQELSEAE 555


>gi|126652264|ref|ZP_01724443.1| DNA primase [Bacillus sp. B14905]
 gi|126590996|gb|EAZ85108.1| DNA primase [Bacillus sp. B14905]
          Length = 611

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/636 (22%), Positives = 278/636 (43%), Gaps = 39/636 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+ +     I ++I +Y+   +R  N     ++  CPFH E+TPSF  +  K  
Sbjct: 9   KIPEEVIEQIRTQSDIVDVISEYMKLTKRGRN-----WFGLCPFHGEQTPSFSVSTDKQI 63

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   G+ ++F+  + G SF ++V +L   AG+ L   P      +K  K +  + 
Sbjct: 64  FHCFGCGAGGNAITFVMDIEGISFPDAVVKLGERAGIHLDVEPSFPGGTKKISKAEERMK 123

Query: 119 RLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
                  DFFHH  L     +    YL ERG     IE   +G++  S  +L   L +KG
Sbjct: 124 EAHAFTADFFHHLLLNTEDGEEPLNYLLERGFTRELIESNNIGWSLPSFDALTILLERKG 183

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNS 236
           ++ +++ E+GL+I  +     +DRFR R++FPIR   G++IAF GR L S GE  KYLNS
Sbjct: 184 YNLQEMAESGLIIKREGEERYFDRFRGRIMFPIRDENGKIIAFSGRILSSTGEEAKYLNS 243

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ +F K + LYN   A   ++K          +  ++L+EG+MDVL+    GV N V+
Sbjct: 244 PESPIFQKSEVLYNLDKARTSIRK----------NRQVVLMEGFMDVLAANSVGVMNAVA 293

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT+LT   +  L +L  +I +C+DGD+ G  AA +A  L         +V+  +L   
Sbjct: 294 TMGTSLTNQHITKLKRLVEQITICYDGDNAGFDAAKRAAQL---LHTERMKVDIAVLPEK 350

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPD +IR  G  AF++ ++      +  +      N++F   ++  +    +   +   
Sbjct: 351 LDPDEYIRTLGGQAFKEQILENPHAYIAFMMMHARRNKNFQFENDTLQYIQEVLEQLIGR 410

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                R  Y + + +      +    +         ++A+    + P+Q        + K
Sbjct: 411 SSPVERDLYIRQLSNETNISEEAIYAQFRKLEANQVRSAK---PEMPTQTPSMPVTQQQK 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E  LL  ++++  ++    +      +  +    ++  L   + E  +   +
Sbjct: 468 PMDAAERAERLLLAHMLHNIDVVDRVLRSEQKEPFVRDAYMAVFVRLVGFYEEYGHPDYQ 527

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
              + L +    +++           + +A  E +          ++   +++R + ++ 
Sbjct: 528 RFMEILDDAELRKIV-----------MEAALVERDPDQAEAEVVDSIRQLQKYR-IEQEI 575

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            +   +  +     E  +   +   +  +   +  I
Sbjct: 576 YQKMHESKEAEKMHEYARALEIAQQIIHLRKSLSAI 611


>gi|238794324|ref|ZP_04637936.1| DNA primase [Yersinia intermedia ATCC 29909]
 gi|238726318|gb|EEQ17860.1| DNA primase [Yersinia intermedia ATCC 29909]
          Length = 582

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/598 (28%), Positives = 284/598 (47%), Gaps = 46/598 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQIERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+  SLK +   +   YL  RG+    I+ F +G+AP    +  +   + G S
Sbjct: 119 LMESLSAFYQQSLKGSSANQAREYLKNRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGES 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  +++  +YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RTALNDAGMLV-TNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A           V   + + +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEA----------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T   ++LL++ +  ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ +  + PL   L++        ++PD RA+L       I+ +  + 
Sbjct: 347 DTLVRKEGKDAFEQRMEVAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +            +    K  +                
Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQAENTNTYQPPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       Q +   +        L+  L    + Q      ++
Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVDTCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +  F + L+ L     +  +     E   VD       ++   ++  L++R++
Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDMVEPTFVDTLASLYDSILEQRQETLIARER 559


>gi|229174967|ref|ZP_04302487.1| DNA primase [Bacillus cereus MM3]
 gi|228608635|gb|EEK65937.1| DNA primase [Bacillus cereus MM3]
          Length = 598

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/630 (25%), Positives = 277/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGMAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL +RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L+EGY DV++  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLLEGYADVMAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++  P +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +          S     N     +  Q  L    R      +K E
Sbjct: 519 LSWLSDEKLKNIITDI----------STDEFINPEYTEEVLQGHLETLSR-HQEKLEKME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  ++ Q+      E     ++ L     +
Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|289207449|ref|YP_003459515.1| DNA primase [Thioalkalivibrio sp. K90mix]
 gi|288943080|gb|ADC70779.1| DNA primase [Thioalkalivibrio sp. K90mix]
          Length = 594

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/609 (27%), Positives = 268/609 (44%), Gaps = 31/609 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI +LL    I  +I + V   +        ++ ACCPFH EKTPSF+ +  K FY
Sbjct: 5   IPQAFIDELLERSDIVEVIQRRVSLKKAGR-----EFAACCPFHGEKTPSFYVSPQKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G  +SFL      SF E+V++LA  AG+ +P      +K+E     L   + 
Sbjct: 60  HCFGCGAHGTAISFLMEYENLSFPEAVEQLAEQAGLEVPREAGGDDKREA-HAPLYEALN 118

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A +++   L+     +   YL  RGID +    +++G+AP S         Q  FS ++
Sbjct: 119 AAAEYYVQQLRQT--PKAVEYLKNRGIDGNTARDYQIGWAPPS---GLIEALQPRFSPQQ 173

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +++AGL    D+     +RFR R++FPIR  RG++  FGGR + +    KYLNSPE+ +F
Sbjct: 174 LVDAGLAARRDDG-GIRERFRARIMFPIRDRRGRITGFGGRLI-EDGEPKYLNSPESEVF 231

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           HKG+ +Y  F A                   I++VEGYMDV+ L +AG +  V+ +GTAL
Sbjct: 232 HKGQTIYGLFEARKA----------GTRLDDIVVVEGYMDVVGLARAGFRRAVACMGTAL 281

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L  L++   RI LCFDGD  G RAA++++   L  +     V  + L  G+DPDS 
Sbjct: 282 TRAHLDSLFRQVSRITLCFDGDAAGRRAAWRSLAEALPAIQGLREVRVLFLPEGDDPDSL 341

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +   G   +E  +  +LPL + L +   E    +T + R          +   +D   R 
Sbjct: 342 VLRDGLAGWEGRLAAALPLSETLVRLLREEHPTDTAEGRTRFAHAAMKLVATTRDPLFRD 401

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              + +        ++   +         +                S+   G   + PS 
Sbjct: 402 QLVERVAQETHLSPERLGEQLREAEDGNVRATGPASGPSDIPE-APSAEPAGAARETPSA 460

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
              ALL  ++ HP +   Q +      +     Q L   L     E+       + +R  
Sbjct: 461 LWGALLARILQHPELEWSQSELADLTAFPGTAAQTL-GKLLEALQERPGCSSAHLLERFR 519

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR----QKEEI 598
           +      L+ L  +    G    T +  +   RQ   Q      R R L+R       E 
Sbjct: 520 DDRHFNRLQALAARELGDGDPKVTQQVAMDCARQLLLQ--QARTRIRELTRADGGLATEQ 577

Query: 599 EKQIAQVTA 607
            +++A++TA
Sbjct: 578 REELARLTA 586


>gi|226311660|ref|YP_002771554.1| DNA primase [Brevibacillus brevis NBRC 100599]
 gi|226094608|dbj|BAH43050.1| DNA primase [Brevibacillus brevis NBRC 100599]
          Length = 624

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/649 (26%), Positives = 284/649 (43%), Gaps = 42/649 (6%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
             +F+  +   + I +++G+YV   +         +   CPFH EK+PSF+ N  + F++
Sbjct: 6   SDEFVNQVRAAVDIVDVVGEYVQLRKSGR-----AFLGLCPFHSEKSPSFNVNAERQFFH 60

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIRLIE 122
           CF C   GD  SFL  L   +F E++ +LA  AG+ +P      E  EK  +  +     
Sbjct: 61  CFGCGAGGDIFSFLMKLEQLTFPEALHKLAERAGIAVPQPQQVEESPEKRMKHVMQEAHT 120

Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             +  +H+ L K         YL +RG+    I  +++G+APDS   + + L ++GFS+E
Sbjct: 121 FVSRLYHYVLTKTPYGAEAMKYLAKRGMSEATIAEYQIGFAPDSWDFVTQQLTKRGFSQE 180

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-------VKYL 234
            ++EAGLL   D     +DRFR R++FPI+ S+G  I FGGR L   +         KYL
Sbjct: 181 LMVEAGLLARSDAG-KIFDRFRGRIMFPIQDSQGNAIGFGGRLLQGSKHNSNQKSQPKYL 239

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPE++LF+K   L+N   A   ++K              +L EGY+DV+S  QAG    
Sbjct: 240 NSPESLLFNKSATLFNLHRARPIIRK----------RKEALLFEGYVDVISAWQAGFTQG 289

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           +++LGTALTE Q R+L + +  +VLC+DGD  G  A  KAI +       G  V    L 
Sbjct: 290 IATLGTALTEQQARILRRNTESVVLCYDGDAAGQEATSKAIHV---LQQAGLIVRVAPLP 346

Query: 355 RGEDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
           +G DPD +IR +G  AF ++++++++P+     K            ++A L       IN
Sbjct: 347 QGVDPDDYIRQHGAEAFSQQVLLQAMPITAFRLKHLRSQFVIKDETDKARLIAKAVEIIN 406

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--SSL 471
            +     R  Y + + +           E        K   +           +      
Sbjct: 407 ELGSPVERDMYQRQLAEEYSLTLGDLKWESKRAYNQQKSERQRDKVTPAWNNSINNGKVT 466

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
           +   L       E  LL  ++ +  I     QE +   +  +E   L ++L++ + E   
Sbjct: 467 LAKTLPPAYHTAERMLLYYMMRNEEIAARVQQECSA-HFQVDEHDALAAYLYAYYAEGNP 525

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
             P +    + +    +L   L        +     + + +++    +Q +  Y +   L
Sbjct: 526 EDPGKFIHYVQDDLLKQLASGLA-------MMECNNDVSELEIGDYIKQ-VNNYPKRAEL 577

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            R ++E      Q  A    +    L   L      +  +E + A+ EG
Sbjct: 578 ERLRDEQRSLHLQAAAADSEDARKQL--ELQAAVTGMKILELENALKEG 624


>gi|315078097|gb|EFT50148.1| DNA primase [Propionibacterium acnes HL053PA2]
          Length = 623

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/654 (21%), Positives = 258/654 (39%), Gaps = 51/654 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I  ++G+YV                 CPFHDEKTPSF    S+G 
Sbjct: 10  RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120
           +YCF C   GD +SF+  +   +F+E+VQRLA   GV L ++D      E  ++  ++  
Sbjct: 66  FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A + F   +     +    ++  RG    A   F +GYAP   + LR+HL  KGF+ 
Sbjct: 126 NEAAAEVFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           + +IE+GL+          D F+ R+++PI+ S   V+ FG R +   +    KY+N+PE
Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K   LY    A   + K           S  ++VEGY DV++   +G+   V++ 
Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290

Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  +   RL+ +L          ++  FDGD  G +AA K            ++    
Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP   +   G  A  +L+   +PL   + +        +  D R          
Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVSQFDLDRADGRVAAIRAAAPL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  I+DQ L   Y + +   +         E S   R  +   +      P  +   S +
Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSHTRRQHRSEPQLTIVPPPEPQ-QGSGI 466

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                +      E   L   + HP +  E++ ++      +   Q ++  + +       
Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              +   +++ E      +KQL+       +          +  + Y +A A   R   +
Sbjct: 522 RGQDRWTEKVSEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 574

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +     ++ ++ +     + +    + S L  +   + +     ++I   G  S
Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA-LRK-----SLIVAGGAAS 622


>gi|311741384|ref|ZP_07715208.1| DNA primase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303554|gb|EFQ79633.1| DNA primase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 640

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 138/653 (21%), Positives = 259/653 (39%), Gaps = 52/653 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +    P+  ++G+YV                  PF DEKTPSFH    +G+
Sbjct: 5   RIPDSDIQAIRERAPLEEIVGEYVQLKPAG----HDSLKGLSPFKDEKTPSFHVRPQRGY 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118
           Y+CFS    GD  SFL  +   SF E+V+ +A   G  +         + +    +  LI
Sbjct: 61  YHCFSTGKGGDVFSFLMEMEQVSFPEAVEAVAQKIGYHINYQGGSTGARTEKPGTRQRLI 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              + A +F+   L+  +      +L +RG     I  F+ GYAP+   +  +HL + GF
Sbjct: 121 AANKAAHEFYRQQLETPQAATARDFLLDRGFSREVIYDFECGYAPEGWDTATKHLLRLGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           S E++  AG  I         DRF  RL++PI+   G VI FG R L   +   KY+N+P
Sbjct: 181 SFEELEAAG--ISKMGKRGPIDRFHRRLLWPIKDLSGNVIGFGARKLFDDDKLGKYMNTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+HK K L+    A   +            +   ++VEGY DV+++  AGV+  V+S
Sbjct: 239 ETMLYHKSKVLFGLDLAKRNIA----------DNHQAVVVEGYTDVMAMYAAGVKTAVAS 288

Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA     L++L          +  ++  FDGD+ G +AA +A D          +   
Sbjct: 289 CGTAFGGEHLQVLRRLMLDDSYFNGELIYTFDGDEAGQKAAMRAFD---GEQKFTGQSFV 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G  A  +LI + +P+ + + +        +T + R +       
Sbjct: 346 SVAPDGMDPCDLRLQKGDAAVRELIADRIPMFEFVIQSVIAEYRIDTAEGRLQALRRAVP 405

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  I+DQ L+  Y++ +   +     + + +         K A     +       Q +
Sbjct: 406 VVAQIRDQPLQREYARRLAGWVGWANPEEVLQQVRAEARKPKKAEKPTIRRFDNAKQQPA 465

Query: 471 LVKGKLSKKPSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                +   PS +E         L   +  P +    +  +    Y N+  + +   + +
Sbjct: 466 QQDVPMIHPPSPKETHLWPQREALKLALQMPQVAGSYFDGITADAYTNDAYRLVRQAIST 525

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR------QGY 578
                +      +          E +  +  +++D    +  +E  +  +       + Y
Sbjct: 526 AGGAAQGASMPAV----------EWIAAVAGEMQDLTGRNFVSELAVEAILPTDVGPEKY 575

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             ++    +  ++  Q  +++ ++ ++    +      L + L  +     ++
Sbjct: 576 ADSVLSRLQETVVGDQIAQLKARLGRMRPSDDEASYNSLFADLVALEQARREL 628


>gi|258593490|emb|CBE69829.1| putative DNA primase [NC10 bacterium 'Dutch sediment']
          Length = 614

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 168/635 (26%), Positives = 285/635 (44%), Gaps = 59/635 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + +  +L    I  LIG+Y+             + A CPFH+EKTPSF  N  +  +
Sbjct: 17  IAEEAVSRVLAGTDIVQLIGRYLPLKPAGR-----YFKALCPFHNEKTPSFTVNPERQIF 71

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-----KKEKIQTDL 117
           +CF C   GD + FL      SF E+++ LA  AG+ LP            + E  +  L
Sbjct: 72  HCFGCGEGGDAIGFLMKQEHLSFPEAIRSLADRAGISLPAQSRTHAGSGTGQNEHARHGL 131

Query: 118 IRLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           + + +VA +FF H L++         YL  RGI    +E F LGYA  S   L  HL ++
Sbjct: 132 LEIHKVAAEFFRHQLQHQTVGTTARAYLRSRGIPDTVVEQFGLGYATASWDGLLRHLLRR 191

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           GFS++++ EAGL +   + + +YDRFRNRL+ PI  S GQVIAFGGR +    + KYLNS
Sbjct: 192 GFSKQQVEEAGLALLRKDGSGAYDRFRNRLMIPICDSSGQVIAFGGRVM-DDSAPKYLNS 250

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET ++ KG +L+    A + ++               ++VEGY D+++L  +GVQ+ V+
Sbjct: 251 PETAIYKKGAHLFGLHLAASAIR----------DRGSAVVVEGYFDLIALHASGVQHTVA 300

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            LGTALT  Q+ LL + + R  L FD D  G+ AA + ++     L  G     +LL  G
Sbjct: 301 VLGTALTAQQITLLHRHTTRAFLVFDPDPAGIAAARRCVE---SLLNSGLDWRVILLPDG 357

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD F+R  G +AF + + +S  L++ L  R+       +P+ +AE    +   +  + 
Sbjct: 358 EDPDRFLRERGPSAFAEALAQSKDLMEFLLDRKVSGFDLTSPEGQAEAVNAVLPLLGAVG 417

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           ++  R +Y+  +  R+       + E +   R  K++                 +     
Sbjct: 418 NEVTRQHYADKLARRVSLSNDAIVRELNRQVRGRKRDT----------------IPLTLQ 461

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            +     E  LL   ++HP       + +     ++  L++++ +        +   P  
Sbjct: 462 PRGLPSIEWKLLHLALHHPGAADRVRKRVRPEELEDRSLRRIFQYAVVGQETGRGATP-- 519

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                        L  ++ + +        T+    D  +  ++AL+         R+++
Sbjct: 520 -------------LAAIEPEAQRILTQLLATDLAEYDGEEAVERALSDCLARLTARRERK 566

Query: 597 ---EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
              E+ +Q+      G+    A L +    ++   
Sbjct: 567 KGEELRRQMEAAERAGDHAMVAHLQAEFLALNRNR 601


>gi|262203033|ref|YP_003274241.1| DNA primase [Gordonia bronchialis DSM 43247]
 gi|262086380|gb|ACY22348.1| DNA primase [Gordonia bronchialis DSM 43247]
          Length = 639

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/652 (21%), Positives = 255/652 (39%), Gaps = 44/652 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +     I +++G+YV   R             CPFHDEKTPSFH   + G 
Sbjct: 4   RIPDRDITAIRDQTRIEDIVGEYVALRRAGA----DSLKGLCPFHDEKTPSFHVRPNHGH 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD  SFL      SF+E+V++LA   G  +         K     +  L+ 
Sbjct: 60  FHCFGCGEGGDVYSFLQKQEHVSFVEAVEQLADRIGYRINYEGGGTAIKRDRGTRARLVA 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A  F+  +L+    ++   YL ER  D+ A   F  GYAPD   ++ + L  +GF 
Sbjct: 120 ANAAAHKFYVAALQTPEAQKARDYLTERDFDAAAAAQFGCGYAPDGWDTMSKALLSQGFE 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238
             ++  AGL  +G       DRFR RL++PIR+  G +I FG R L   +++ KY+N+PE
Sbjct: 180 FSELKAAGLSTEGRK--GPIDRFRRRLLWPIRNLGGDIIGFGARKLFDDDTMGKYMNTPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T+L+ K + L+    A   + +             +++VEGY DV+++  +GV   V+S 
Sbjct: 238 TMLYKKSQVLFGLDHAKKNIAR----------GHQVVVVEGYTDVMAMHLSGVTTAVASC 287

Query: 299 GTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  E  L L+ +L          ++  FDGDD G  AA KA +          +    
Sbjct: 288 GTAFGEDHLSLIRRLMMDDSYFRGEVIYTFDGDDAGKAAALKAFEGEQSISG---QTFVA 344

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP    +  G  A   LI   +P+ +   +        +T + R          
Sbjct: 345 IAPDGMDPCELRQAKGDAAVRDLIARRVPMFEFAIRTLLTEHDLDTAEGRVHALREAVPV 404

Query: 412 INHIKDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRD--------QKGP 462
           +  IKD  LR  Y++ +   +  +   + +      G   ++ +  RD        ++G 
Sbjct: 405 VARIKDIALRDEYARQLAGWVGWEEVGQVLARVREEGAKVQRTSVSRDRSTTVNGARRGR 464

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
            +   +  + +   +      +   L   + +P I    +  L    +       +   +
Sbjct: 465 PEGESRPVMARPLATDPRLWPQREALKAALQYPGIAGTVFDSLPVECFTEPAYAAVRQAM 524

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            +                +      + ++ L  ++   G+          D    Y   +
Sbjct: 525 TALGGTSSGLGGAGWVDAVRTAVDDQSIEPLVTELAVEGMPV------DEDNIPRYISGV 578

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               +   +  Q  +I+ ++ ++    + +    +   L  +      +  Q
Sbjct: 579 LARLQEVWVGAQIADIKSRLRRMAPGEDPDGYNAVFGDLVALEAYRRSLLEQ 630


>gi|238796947|ref|ZP_04640451.1| DNA primase [Yersinia mollaretii ATCC 43969]
 gi|238719207|gb|EEQ11019.1| DNA primase [Yersinia mollaretii ATCC 43969]
          Length = 582

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 174/598 (29%), Positives = 282/598 (47%), Gaps = 46/598 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQIERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+  SLK         YL  RG+    I+ F +G+AP    +  +   + G S
Sbjct: 119 LMESLSAFYQQSLKGQNANPAREYLKRRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGES 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  +++  +YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RTALNDAGMLV-TNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A           V   + + +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEA----------QVNPPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T   ++LL++ +  ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ + E+ PL   L++        ++PD RA+L       I+ +  + 
Sbjct: 347 DTLVRKEGKDAFEQRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +            +    K  +                
Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQAENTNTYQPPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       Q +   +        L+  L    + Q      ++
Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVETCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +  F + L+ L     +  +     E   VD       ++   ++  L++R +
Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDMVEPTFVDTLASLYDSILEQRQETLIARDR 559


>gi|157693021|ref|YP_001487483.1| DNA primase [Bacillus pumilus SAFR-032]
 gi|157681779|gb|ABV62923.1| DNA primase [Bacillus pumilus SAFR-032]
          Length = 609

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/638 (25%), Positives = 295/638 (46%), Gaps = 42/638 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +  +  I  +IG+YV   ++  N     Y+  CPFH E TPSF  +  K  
Sbjct: 4   RIPDELLEQIQKNADIVEVIGEYVQLRKQGRN-----YFGLCPFHGENTPSFSVSADKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-----VVDPKIEKKEKIQTD 116
           ++CF C   G+  SFL  + G SFIE+V  +A    + LP            +++     
Sbjct: 59  FHCFGCGAGGNVFSFLRQMEGYSFIEAVSHVADKYHIDLPDHVANAQISSSHQEDTADHK 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           +I   E+   F+HH L      +    YL  RG     I  F++GYA DS   + + L +
Sbjct: 119 MIEAHELLKKFYHHLLVNTKEGQNALDYLRARGFTDETIAKFEIGYALDSWDFVTKFLEK 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +GF    + +AGLLI  +N    +DRFR+R++FPI    G V+AF GR+L   +  KY+N
Sbjct: 179 RGFDPAMMEKAGLLIQRENGTGFFDRFRDRVMFPIHDHHGTVVAFSGRSL-GDQQPKYMN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LFHK K LY+F  A  +++K  R           +L EG+ DV+S   +GV   V
Sbjct: 238 SPETPLFHKSKLLYHFHDARMHIRKRERA----------VLFEGFADVISAVTSGVGESV 287

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +++GT+LTE  ++LL +    I+LC+D D  G  A  KA DL       G +V   ++  
Sbjct: 288 ATMGTSLTEEHVKLLRRNVEEIILCYDSDTAGYEATMKASDL---LGKRGCKVRVAMIPD 344

Query: 356 GEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
           G DPD +IR YG   F   +I  S+ L+          ++ +   +R      +   I+ 
Sbjct: 345 GLDPDDYIRKYGGEKFRNDIIDASVTLMTFKMNFFRRGKNLSDEGDRLSYMKQVLREISR 404

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ---SSL 471
           +     +  Y + +             +   + +  ++ A+   ++   ++      + +
Sbjct: 405 LNGSLEQEIYMKQLAGEFSISLDSLKEQLELFEKQQRQEAKSTQEESGLEKRRAHLSTQV 464

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            + +L       E  LL  ++    ++++    +  I ++ +  + L +++++ + E K 
Sbjct: 465 RRKRLRPAYENAERMLLAHMLKSDDVIRKVLDRVG-IEFNIDSHRALATYIYALYEEGKE 523

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
             P+ +  R+ +    +++ QL   +    +    +EA + D    Y + +  ++   ++
Sbjct: 524 PTPQHLMNRIED----DVINQLLTDIFMIQVGDELSEAELSD----YVKKVLNHRNLSMI 575

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
               +E+E+  A+   + +  K A L   + +++  + 
Sbjct: 576 KE--KELER--AEAERQKDFFKAATLAKEIIQLNRSLK 609


>gi|254281912|ref|ZP_04956880.1| DNA primase [gamma proteobacterium NOR51-B]
 gi|219678115|gb|EED34464.1| DNA primase [gamma proteobacterium NOR51-B]
          Length = 633

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 170/660 (25%), Positives = 274/660 (41%), Gaps = 60/660 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ F+ DLL  + I ++I + V   +   N     Y ACCPFHDEKTPSF  N  K F
Sbjct: 4   RIPQKFLDDLLDRLDIVDVIDRRVKLRKTGKN-----YSACCPFHDEKTPSFSVNPEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTDLI 118
           +YCF C   G+ + F+       F E+V+ LA  AG+ +P  +               L 
Sbjct: 59  FYCFGCGAGGNAIGFVMDYEKLDFPEAVENLAQSAGLEVPREEARPGSAANSADSNKPLY 118

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             +E +  F+  SL+ +        YL  RG+     + F+LGYAP    +L     Q  
Sbjct: 119 ESLEQSAQFYERSLRQHPAAGSAVDYLKSRGLTGEIAKAFRLGYAPPGWDNLIAACGQSE 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
             +E++++ G+LI   +    YDRFR R+IFPI   RG+VIAFGGR L   +  KYLNSP
Sbjct: 179 AEQERLLKCGMLIKN-DRDRVYDRFRERVIFPILDQRGRVIAFGGRVL-GDDKPKYLNSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK + LY  + A  Y  +  R          I++VEGYMDV++L Q G+   V++
Sbjct: 237 ETPVFHKSRELYGLYQARKYNNRLER----------IVVVEGYMDVIALAQHGIGYAVAT 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA +E  L  L++L P ++ CFDGDD G +AA++A++  L  +  G +  F+ L  GE
Sbjct: 287 LGTATSEAHLERLYRLVPEVIFCFDGDDAGRKAAFRALESALPVMQDGRQARFLFLDEGE 346

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD+ +R  G+   E     + PL   L+   +E     T D RA L       +  + D
Sbjct: 347 DPDTLVRKKGRDFIEARFNGAAPLETYLFDHLSEAMDVATMDGRARLSKLAAPFLQRLPD 406

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR----------HRDQKGPSQRLM 467
              +    Q +  R            +      ++                   P     
Sbjct: 407 GVFKELMYQDLARRTGIDLDSLKRLQAPPPTPEQRPTSGPVMAESELTPPPFDAPPLEDG 466

Query: 468 QSSLVKGKLSKKPSLREA--------------ALLLTLINHPAILQEQYQELADIRYDNN 513
                  +  +  S  E                LL   +  P + ++       +   + 
Sbjct: 467 DWEPTGQQFDEAESNAERTGPALDPRVHSAVQRLLGLTVLKPVLAKD-LDTGELVDGSHE 525

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           +L  L   L +   E        +         G+ L         +G  +   +A +  
Sbjct: 526 DL-TLLRELANHIHENPQISSAALLGYWYGTSDGQRLAD------YSGRETLIEDAGLDA 578

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +  G    +  +++   L+ +   ++ +        + +        L  +  Q+  ++ 
Sbjct: 579 LFTGLLDQVRNHRQAVSLNERLRALKAK-----PFADLDTDEK--QELMAITRQLRTLKG 631


>gi|255282435|ref|ZP_05346990.1| DNA primase [Bryantella formatexigens DSM 14469]
 gi|255267019|gb|EET60224.1| DNA primase [Bryantella formatexigens DSM 14469]
          Length = 590

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/617 (24%), Positives = 264/617 (42%), Gaps = 40/617 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + ++++     I ++I  YV   R+ +      Y+  CPFH EK+ SF  +  K 
Sbjct: 1   MYYSEELVEEVRSRNDIVDVISGYVRLQRKGS-----SYFGLCPFHSEKSASFSVSREKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLI 118
            YYCF C   G+  +FL      +F E+++ LA  AGV LP  +   ++ +++ +++ ++
Sbjct: 56  MYYCFGCGAGGNVFTFLMEYEHYTFPEALRVLAERAGVQLPEQEMNEEMRREQSLRSRIL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            L ++A  +F++ L+         YL +R +    I  F LGYA      L  +L+ K  
Sbjct: 116 ELNKMAAKYFYYQLRQEGGAHAMRYLKDRQLSDETIHHFGLGYANKYSDDLYRYLKGKNI 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            +E + ++GL+   D     YD+F NR+IFPI    G+VI FGGR +      KYLNSPE
Sbjct: 176 PDELLAQSGLM-QVDEKRGMYDKFWNRVIFPIMDVNGRVIGFGGRVM-GDGKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K +NLY    A    +K             +++ EGYMDV+SL QAG  N V+SL
Sbjct: 234 TVVFDKSRNLYGLNFARTARKK------------QLLVCEGYMDVISLHQAGFINSVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     L+ + +  ++L +D D+ G+RAA +AI L       G     + +   +D
Sbjct: 282 GTALTSQHASLIRRYTDEVILTYDSDEAGVRAALRAIPL---LAEAGVTARVLNMRPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G   F+K I ++            ++   + P  +      +   +   + +
Sbjct: 339 PDEFIKALGAEEFQKRIDDAQNSFLFETDILQQSYDMSDPSGKTAFYEAVAKKLVGFEQE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+  R            +         +R           ++S   +     
Sbjct: 399 LERENYLEAVARRYGVSADSLRKMVNSIALKGMNFSR--------TEPVRSQTARQDKEP 450

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LL  LI +P++ +   + +    +     + +   LF  + E     P  I 
Sbjct: 451 GILKSQKLLLTWLIEYPSLYEGARRFITPDDFTGEPYRTVAELLFEQY-EAGEKSPARII 509

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL------LS 592
               +         L          +   +A    ++  +  +L   ++         L 
Sbjct: 510 NHFTDPEEQSKAAALFHSTLAVESEAEREKAFKETLQNIFLSSLERRRKELSPTDMAGLQ 569

Query: 593 RQKEEIEKQIAQVTAKG 609
           +   E +K++ ++ A  
Sbjct: 570 KLITE-QKRVREIAAAN 585


>gi|302386570|ref|YP_003822392.1| DNA primase [Clostridium saccharolyticum WM1]
 gi|302197198|gb|ADL04769.1| DNA primase [Clostridium saccharolyticum WM1]
          Length = 588

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 149/612 (24%), Positives = 272/612 (44%), Gaps = 32/612 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I+++ +   I ++I  YV   ++ +N     Y+  CPFH+EK+PSF  + +K 
Sbjct: 1   MRYSEEVIEEVRMKNDIVDVISGYVKLQKKGSN-----YFGLCPFHNEKSPSFSVSPAKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+ L+F+      SF E+++ LA  +GV LP      +  ++E +++ L+
Sbjct: 56  MYYCFGCGAGGNVLTFVMEYENYSFSEALKVLADRSGVKLPAAEYSKEAREQEDLRSALL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A  +F++ LKN + +  + YL +R +    I  F LGY+  +   L  +L+ KG+
Sbjct: 116 EINKLAASYFYYQLKNPQGEAGYRYLRDRQLSDETITRFGLGYSNKTSSDLYRYLKSKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            +  + + GL+        ++D+F NR++FPI     +VI FGGR +  GE  KYLNSPE
Sbjct: 176 DDSLLKQTGLVTI--EERGTFDKFWNRVMFPIMDVNNRVIGFGGRVMGAGEP-KYLNSPE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF K +NLY    A              +   +I++ EGYMDV+++ QAG  N V+SL
Sbjct: 233 TKLFDKSRNLYGLNYAR------------LSREKYILICEGYMDVIAMHQAGFTNAVASL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T    +LL + + ++VL +D D  G++AA +AI +       G  +  + +   +D
Sbjct: 281 GTAFTSQHAQLLKRYTDKVVLTYDSDGAGVKAALRAIPI---LKEAGMSIRVLTMQPYKD 337

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AF + I E+            +N     P+++ E    +   +    + 
Sbjct: 338 PDEFIKNLGAEAFRQRIEEARNSFLFEIDVLKKNYQMEDPEQKTEFYNQVARKLLEFPEA 397

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+       ++      +  G     +        P +  +  +  K +   
Sbjct: 398 LERENYLEAVSREYYINYEDLKRLVNRLGASLGPSVSI-----PREEGILKNQRKKEKED 452

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LL  LI +P +  +    ++   +      K+   +F           E ++
Sbjct: 453 GVKQSQRLLLTWLIENPLLFDKINGVISPDDFIEELYHKVARMVFDGHAAGTLNPAEILN 512

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +      +  L        L +   +    +     ++    +           E+
Sbjct: 513 HFIHDEDQYRAVAGLFHANLKESLDNEEQKKAFSETIMKVKKNSLDHASRHAAG--ILEL 570

Query: 599 EKQIAQVTAKGE 610
           +  I +  A  +
Sbjct: 571 QNIIKEQAALKD 582


>gi|159039333|ref|YP_001538586.1| DNA primase [Salinispora arenicola CNS-205]
 gi|157918168|gb|ABV99595.1| DNA primase [Salinispora arenicola CNS-205]
          Length = 627

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/648 (22%), Positives = 250/648 (38%), Gaps = 43/648 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I+ +I + V           G+    CPFHDEK+PSF+ + ++  
Sbjct: 7   RIRDEDIALVRERTSIAEVISETVTLRSAG----GGNLKGLCPFHDEKSPSFNVSPARNV 62

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-----VDPKIEKKEKIQTD 116
           +YCF C   GD + FL      SF+ESV+RLAA AG+ L         P+   ++  +  
Sbjct: 63  WYCFGCGAGGDAIKFLMDAEHLSFVESVERLAARAGLQLRYVANDHTAPRSRPQQGQRQR 122

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L+     A +F+   L     +    +L  RG D  A E +  G+APD    L  HLRQ+
Sbjct: 123 LVAAHAAAVEFYRAQLTTPGARPAREFLAHRGFDRAAAERYACGFAPDGWDLLTRHLRQQ 182

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLN 235
           GFS ++++ AGL     +  +  DRFR RL++PIR   G V+ FG R L   +   KYLN
Sbjct: 183 GFSHDELVTAGLSRPARSG-SLIDRFRRRLLWPIRDLTGDVVGFGARKLFDDDDSPKYLN 241

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +PET ++ K   LY    A   + K  +          +++VEGY DV++   AGV   V
Sbjct: 242 TPETPIYKKSHVLYGIDQAKREIAKQGK----------VVVVEGYTDVMACHLAGVPTAV 291

Query: 296 SSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           ++ GTA     + +L +       ++  I+  FDGD  G +AA +A D     +    R 
Sbjct: 292 ATCGTAFGADHIGVLRRLLLDTDAVAGEIIFTFDGDAAGQKAALRAFDDDQRFVG---RT 348

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
              +   G DP       G+ A   L+    PLVD   +        +T D R E     
Sbjct: 349 FIAVSPDGMDPCELRLAKGELAVRDLVARREPLVDFALRHVINRHDLDTVDGRVEAMRRA 408

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              +  +KD++ R  Y + +   L    +                    +         +
Sbjct: 409 APLVAKLKDREKRPEYVRKLAGDLGMEIEPVQRAVLAAAHAAPSGGALGNP------APR 462

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           ++  + +        E   L   +  P +    +  +    Y +     + + + +    
Sbjct: 463 AAAAEPQADSPQLAVEREALKLALQAPVLAGPMFDAVEAAEYRHQVHVAVRAAVAAAGGA 522

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                     + +         + L  ++    L          ++   Y        ++
Sbjct: 523 ATATGGAVWIESVRNACEDLTAQALVGELAVEPLRI------DGELDPRYVSVTMARLQW 576

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             ++ +  E++ +I ++      +        L  +      +  Q A
Sbjct: 577 GAVTGRIRELKSRIQRINPVSNKDDYFAAFGELLSLEQHARALREQAA 624


>gi|90416499|ref|ZP_01224430.1| DNA primase [marine gamma proteobacterium HTCC2207]
 gi|90331698|gb|EAS46926.1| DNA primase [marine gamma proteobacterium HTCC2207]
          Length = 665

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 170/675 (25%), Positives = 276/675 (40%), Gaps = 70/675 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI DLL  + I +++   V   +   N     Y ACCPFHDEK+PSF     K F
Sbjct: 4   RIPQTFIDDLLDRVDIVDVVNGRVPLKKAGKN-----YKACCPFHDEKSPSFTVAQDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C   G+ L F+       F+ +V+ LA  AG+ +P    +  K  K + +L  ++
Sbjct: 59  YYCFGCGAGGNALGFVMEFDRLDFLPAVEMLARNAGLEIPREAAQDPKISKQKDNLYSIL 118

Query: 122 EVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             +  +F   L+          YL  RG+       + +GYAP    +L + +       
Sbjct: 119 TESDRYFRQQLRTHAGAASAVDYLKARGLSGQVAAQYGMGYAPPGWDNLLKAVGTDEQRT 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             + E+G+L+        YD FR+R+ FPIR  RG+ + FGGR L      KYLNSPET 
Sbjct: 179 ALLNESGMLVIKPEEKKQYDFFRHRITFPIRDQRGRTVGFGGRVL-DDSKPKYLNSPETP 237

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F KG+ LY  + A   L+              +I+VEGYMDV++L Q  + N V++LGT
Sbjct: 238 VFSKGRELYGLYEARQKLK----------EIPCLIMVEGYMDVIALAQFEINNAVATLGT 287

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE  L+ +++ +  IV CFDGD  G +AA +A+D  L  +  G    F+ L  GEDPD
Sbjct: 288 ALTESHLQKIFRYTSEIVFCFDGDSAGRKAAARALDTALPEMRDGVSAKFLFLPDGEDPD 347

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           + +R  GK  F + I  + PL + L+++ ++    +T D +A L       IN I     
Sbjct: 348 TMVRQLGKQEFNEQIDRAQPLSEFLFEQLSDGIDSSTADGKARLSKVCAPQINRIPQGVF 407

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS--SLVKGKLSK 478
           R    + +  R     +      + +     +    +    P+ +      S      S 
Sbjct: 408 RQLMLEELSSRTGISAENLRDYVATHKPPAGRGNASQQTHQPAHQPAPRLASQPTAHTSN 467

Query: 479 KPSLREA-----------------------------------ALLLTLINHPAILQEQYQ 503
           +    E                                     L   L+NHP +  E  +
Sbjct: 468 QAPTDEFYSGPPPDDIYGDGDYEPYPETVAVRRSKIRLSPIKVLSALLVNHPQLA-EYVE 526

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFL-PEEIHQRLCERGFGELLKQLDRQVRDAGL 562
           ++  +    +    L+  + +             I  R       +   QL + +  + L
Sbjct: 527 DIEMLSVSADPDMALFLKILALINSDPTCSKTSHIFARWQATYSDQTELQLLKTLAGSEL 586

Query: 563 WSATTEANIVDVRQ-------GYQQALALY---KRFRLLSRQKEEIEKQIAQV----TAK 608
                     D ++         + A       ++   L   +   E+QI Q+       
Sbjct: 587 HQPPKGTGRDDNQEFVDSLNHVIRDAFESLPPERKADFLLAAETLNERQIKQLWKIHMQL 646

Query: 609 GEAEKTAILISILHE 623
           G+  +   L + + +
Sbjct: 647 GDDNQFVELKNKIKQ 661


>gi|325263836|ref|ZP_08130569.1| DNA primase [Clostridium sp. D5]
 gi|324030874|gb|EGB92156.1| DNA primase [Clostridium sp. D5]
          Length = 594

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 165/641 (25%), Positives = 275/641 (42%), Gaps = 53/641 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP + I+++ +   I ++I  YV   ++ +      Y+  CPFH+EK+PSF  +  K 
Sbjct: 5   MYYPEELIEEVRMKNDIVDVISGYVRLQKKGS-----SYFGLCPFHNEKSPSFSVSRGKQ 59

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+  +FL      SFIE+V+ LA  AGV LP      + ++K  ++  L+
Sbjct: 60  MYYCFGCGAGGNVFTFLMEYENFSFIEAVKFLADRAGVELPEMEYSKEAKEKAGLRATLL 119

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + +VA  +F+  LK  + K  + YL  R +    I+ F LGY+      L ++LR+KG+
Sbjct: 120 EINKVAAQYFYVQLKTEQGKTAYTYLTNRELSDDTIKAFGLGYSNKYSNDLFQYLRKKGY 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           SE+ I +AGL I+ D     YD+F NR++FPI     +VI FGGR +      KYLNSPE
Sbjct: 180 SEDLIRQAGL-INTDEKNGVYDKFWNRVMFPIMDVNNRVIGFGGRVM-GDGKPKYLNSPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K +NLY    A              +   ++++ EGYMDV+SL QAG  N V+SL
Sbjct: 238 TAIFDKSRNLYGLNRAR------------TSRKPYLLICEGYMDVISLHQAGFTNAVASL 285

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     L+ +    + L +D D+ G +AA +A+ +       G     + +   +D
Sbjct: 286 GTALTTGHASLIKRYVQEVYLTYDSDEAGTKAALRAVPI---LKEAGISAKVIRMDPYKD 342

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G   FEK I  +        +   +N    +P+ +          +   +D+
Sbjct: 343 PDEFIKNLGADEFEKRIGSARNGFLFSLEILAKNYDMESPEGKTAFFKETAKRLMGFEDE 402

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+    +   +      +       K A       P+ R  Q+  VK K   
Sbjct: 403 LERNNYIEAVAKSYRVSEESLQKLVT-------KTAISEGMAKPAARPKQAGGVKPK-ED 454

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              + +  LL  +I    +     + ++   +     + +   L+  + E     P +I 
Sbjct: 455 GILVSQKILLTWMIEDVKLFGTIKRYISPEDFTEELYRTVADLLYEQY-EAGELNPAKIL 513

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               E         L          +   E +  + ++   +   L  +   +  +   +
Sbjct: 514 NHFTEEEEHREAASLFH--------TKIRELSTREEQEQALKETILRVKGHSIDYRTMHL 565

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                              +  L E   ++  I+     IE
Sbjct: 566 ------------DPTDMAGLQRLMEEKRKLDDIKKLHISIE 594


>gi|258652154|ref|YP_003201310.1| DNA primase [Nakamurella multipartita DSM 44233]
 gi|258555379|gb|ACV78321.1| DNA primase [Nakamurella multipartita DSM 44233]
          Length = 648

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 149/654 (22%), Positives = 251/654 (38%), Gaps = 56/654 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                  + +     I  ++G+YV       NA  G+    CPFHDEKTPSF  + ++G+
Sbjct: 3   RITDADRERVRDASRIEQVVGEYVAL----RNAGGGNLKGLCPFHDEKTPSFQVSPARGY 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           Y+CF C   GD  SFL  +   +F+ESVQRLA  AG+ L +V+     + +   +  L+ 
Sbjct: 59  YHCFGCGKGGDVFSFLQEIDQLTFVESVQRLAERAGIALTLVEGGSSTRTERGTRPRLLA 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           + + A  F+   L+    +    +L ERG D  A   F  GYAPD    L + L  +GFS
Sbjct: 119 VNKAAAAFYAEQLQTPGAQVARDFLAERGFDLAAAAHFGCGYAPDGWDELVKALTGQGFS 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK--YLNSP 237
            E++  AG+   G       D+F  RL++ IR + G V+ FG R L   + V+  YLN+ 
Sbjct: 179 VEELYRAGVARQGQR--GPIDQFHRRLLWSIRDAAGDVVGFGARRLFDDDRVQAKYLNTS 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET L+ K + L+    A   + K  +          +++VEGY DV+++  AGV   V+S
Sbjct: 237 ETPLYKKSQVLFGLDLAKREIIKQRK----------VVVVEGYTDVMAMHLAGVTTAVAS 286

Query: 298 LGTALTEYQLRLLWKL--------------SPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343
            GTA  +  + +L +                  +V  FDGD  G +AA KA D       
Sbjct: 287 CGTAFGDEHISVLRRYLLDSQAGPGTMRARDGMVVYTFDGDAAGRQAALKAFDSDQRFAA 346

Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
                   +   G DP    +  G  A  +L+  +  L +          + ++ +    
Sbjct: 347 ---NTYVAIEKNGLDPCELRQAKGDEALRELVDSARNLFEFAIASAVGQFNLDSAEGGYA 403

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
                   +  IKD  LR  +++ +        Q+         +   +      ++ P 
Sbjct: 404 ALNAGVPLVARIKDDLLRDQFAKTLAMHAGTDIQETRERVRRAAQTRAQAPDPEPRRRPE 463

Query: 464 QRLMQSS--------------LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
            R  +                L       +    E   L   +  PA++   Y  +    
Sbjct: 464 SRAGERQRSDPEPPPEPEPPDLDWPDPRDRELTAEREALKLALQQPALVASAYGMIEAEV 523

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
           +       +   + +                +        L+ L  +     L     E 
Sbjct: 524 FRAPAYATVHRAISALGGPSGDRSGPAWVDEVRGELPEGRLRSLVTE-----LAVERPEW 578

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
              +V   Y  ++      R   RQ++ +   + +  A G++     L + L E
Sbjct: 579 LSDEVDARYAGSILARLAERQAIRQEKRLISALQRAEATGDSALARELNADLAE 632


>gi|117924114|ref|YP_864731.1| DNA primase [Magnetococcus sp. MC-1]
 gi|117607870|gb|ABK43325.1| DNA primase [Magnetococcus sp. MC-1]
          Length = 639

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 179/667 (26%), Positives = 295/667 (44%), Gaps = 68/667 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           +P  F+  L   + I ++I + +   ++  N     +   CPFH EK+PSF  N  KGFY
Sbjct: 4   FPDTFLDQLKERVDIVDVIERQLPLKKQGRN-----WIGLCPFHHEKSPSFSVNQEKGFY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIR 119
            CF C   GD + F+    G  F E+++ LAA AG+PLP     +P   + ++ +  L  
Sbjct: 59  KCFGCGASGDAIKFVQQTRGIPFEEAIRELAAQAGLPLPQEQRQNPAQAQAKEKRDRLRA 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E +  FF   L+         YL  RG+ +  I  ++LG+AP    +L +       +
Sbjct: 119 LLEESKRFFQGQLRAPNGGLARAYLQRRGLTAETISSYELGFAPAGWRNLLDFFGGGDSA 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            E ++EAGLL+      + YDRFRNR+IFPI  SRG+ IAFGGR L   E  KY+NSPET
Sbjct: 179 IELMLEAGLLVKK-EDGSVYDRFRNRIIFPILDSRGRCIAFGGRVL-TDEKPKYINSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            L++K + LY    A            R +     ++VEGYMD + L +  +   V++LG
Sbjct: 237 PLYNKSEVLYALNRAQE----------RWSRGEMALVVEGYMDAVMLAEHHLTGTVATLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA+TE  L+LLW+ + RI+ CFDGD  G RAA++A++  L  L     + F+ L  GEDP
Sbjct: 287 TAVTEQHLKLLWQRTNRIIFCFDGDAAGRRAAWRALERGLQGLQADRHMQFLFLPEGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS ++  G   F++    +   + ++ K   E     TP+ RA     ++  I  + D  
Sbjct: 347 DSLVQKEGVQRFKERANGAYSPMQLMHKVMGEQLDLYTPEGRAAAVHRMRPLITSVADPV 406

Query: 420 LRYYYSQAIRDRLQQLFQKYI----TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           LR  Y+  +  +L  +    +       +     W  +  + +   P   +      + +
Sbjct: 407 LRQLYADDLGHKLGGVSGAQLLYGGESPAPATPAWPGSTPYGEGHAPRFPVRSGGSRRAE 466

Query: 476 LSKKPSLR-----------------------------EAALLLTLINHPAILQEQYQELA 506
                  R                             E ALL  L+N P +L E  + L+
Sbjct: 467 WRNTIKNRGGWQPAQKPSWEQEVSSLLLGGEVRGRDFEQALLAQLLNDPRLLLEHQETLS 526

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I+  N +L +L + L     + ++        +L +    +L +++             
Sbjct: 527 TIQLKNTQLNQLLTELLEVGPDLQHLDQPFSIDQLKDGQSAQLARRI-----------LL 575

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            E   +D      +      + R L ++   +  +I Q    G AE        L ++  
Sbjct: 576 EEQTPLDDPARELEGCMKTDQLRQLQQEMVAVNARIRQ----GNAETFKKDFDHLMQLKK 631

Query: 627 QIHQIES 633
            + +++ 
Sbjct: 632 DMDRLKQ 638


>gi|294812505|ref|ZP_06771148.1| DNA primase [Streptomyces clavuligerus ATCC 27064]
 gi|326441041|ref|ZP_08215775.1| DNA primase [Streptomyces clavuligerus ATCC 27064]
 gi|294325104|gb|EFG06747.1| DNA primase [Streptomyces clavuligerus ATCC 27064]
          Length = 637

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/658 (22%), Positives = 267/658 (40%), Gaps = 48/658 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D IK +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  +  KG 
Sbjct: 4   RINDDDIKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPGKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD ++F+  +   +F E+V+RLA  AG+ L   +       +   +  L+ 
Sbjct: 60  FHCFGCQEGGDTIAFVMKIDHLTFSEAVERLAGTAGITLRYEEGGYNPSHQRGERIRLVE 119

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             +VA  ++   L  +        +L ERG D  A   F +GY+P     L   LR KGF
Sbjct: 120 AHKVAAQYYAEQLENSPEAAAGRTFLAERGFDQAAALHFGVGYSPQGWDHLTRFLRGKGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           S++++  +GL    +      DRFR RL++PIR   G V+ FG R L + ++  KYLN+P
Sbjct: 180 SDKELTLSGL--SQEGRRGPIDRFRGRLMWPIRDISGDVVGFGARKLHESDNGPKYLNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++ K + LY    A   + +          +S  ++VEGY DV++   AGV   +++
Sbjct: 238 ETAIYKKSQVLYGIDLAKKEIVR----------TSTAVVVEGYTDVMACHLAGVTTAIAT 287

Query: 298 LGTALTEYQLRLLW-----KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            GTA     +++L        +  ++  FDGD  G +AA +A +            +  +
Sbjct: 288 CGTAFGGDHIKILRRLLMDHATAEVIFTFDGDAAGQKAALRAFEDDQKFAA---ETSIAI 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP       G  A E L+    PL +   ++  +  +   P  +A         +
Sbjct: 345 TPGGMDPCDLRLAEGDAAVEALVGSRTPLFEFAMRQIVQRHNLENPAGQAGALDEAAPVV 404

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             IK+  +++  +  +   +  L  +++ +       W ++   R       R       
Sbjct: 405 AKIKNPAIQHGSAVQLAGMIGILDTQFVVKRVAQLARWARDRGGRGPAPGDTRRRGPQPP 464

Query: 473 KGKLSKKP------------SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           +   +  P               E  LL   + HP ++   +       +       +  
Sbjct: 465 QQATAPAPAGGPALHLRSPAHRTERELLKLALQHPELVSPAFDAYGMDEFTAAPYAAVRQ 524

Query: 521 FLFSDFV-EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
            +      EQ          R+ E    + ++ L  ++    + + T +       + Y 
Sbjct: 525 TVADAGGTEQGLSDGPGYLARVREAAPNDTVRALVTELAVEAIHARTVD-------EIYA 577

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
               +  R R + R+  EI+  + ++    + E+ + + + L  +      + +  A 
Sbjct: 578 GVQLVQVRLRAVDRRVLEIQGTLTRLGQHADPERFSAVQNELWVLQQYAQSLRTHGAA 635


>gi|293394294|ref|ZP_06638594.1| DNA primase [Serratia odorifera DSM 4582]
 gi|291423272|gb|EFE96501.1| DNA primase [Serratia odorifera DSM 4582]
          Length = 582

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 176/630 (27%), Positives = 288/630 (45%), Gaps = 53/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDRLEFVETIEELATMHGLEVPYEAGTGPTQIERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+  S+     K+   YL +RG+    I  F +G+AP    +  +   +   S
Sbjct: 119 LMEQLSAFYQQSMHQPNGKQARDYLQQRGLSDDVIRHFAIGFAPAGWDNALKRFGRDPDS 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  ++   +YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RAALNDAGMLV-TNDQGRTYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGMPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A        R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EVFHKGRQLYGLYEAQQSHPTLQR----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATDNVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ IR  GK AFE+ + ++ PL   L++        ++PD RA+L       I  +  + 
Sbjct: 347 DTLIRKEGKQAFEQRMEQAQPLSTFLFESLMPQVDLSSPDGRAKLSTLALPLITQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q +  +L  L    + +          + +    K  +                
Sbjct: 407 LRLYLRQQLGSKLGLLDDNQLDKLMPKQAENGNSYQPPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +       L  +         L+  L    + Q      ++ +
Sbjct: 452 -----RILIGLLVQNPHLATLVP-ALEGLEQTRQPGLPLFVELVQTCLSQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              +  F + L+ L     +  +     E   +D       ++        L ++ E + 
Sbjct: 506 LYRDNKFSQQLETLATW--NHMIIEDMVEQTFLDTLASLYDSV--------LEQRLETL- 554

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             IAQ    G + +    +  L++V  + +
Sbjct: 555 --IAQARTHGLSPEEREEVRSLNQVLAKKN 582


>gi|238762466|ref|ZP_04623437.1| DNA primase [Yersinia kristensenii ATCC 33638]
 gi|238699451|gb|EEP92197.1| DNA primase [Yersinia kristensenii ATCC 33638]
          Length = 582

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 174/598 (29%), Positives = 284/598 (47%), Gaps = 46/598 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQIERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+  SLK     +   YL  RG+    I+ F +G+AP    +  +   + G S
Sbjct: 119 LMESLSAFYQQSLKGQTANQAREYLKRRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGES 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  +++  +YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RTALNDAGMLV-TNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A           V   + + +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEA----------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T   ++LL++ +  ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ + E+ PL   L++        ++PD RA+L       I+ +  + 
Sbjct: 347 DTLVRKEGKDAFEQRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +          + +    K  +                
Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKLAENTNSYQPPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       Q +   +        L+  L    + Q      ++
Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVETCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +  F + L+ L     +  +     E   VD       ++   ++  L++R +
Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDMVEQTFVDTLTSLYDSILEQRQETLIARDR 559


>gi|330448777|ref|ZP_08312424.1| DNA primase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492968|dbj|GAA06921.1| DNA primase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 586

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/616 (26%), Positives = 274/616 (44%), Gaps = 53/616 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DL+    I ++I   V   ++  N     + ACCPFH+EKTPSF  +  K F
Sbjct: 4   KIPRSFIDDLISRHDIVDVIDARVKLKKQGKN-----FGACCPFHNEKTPSFSVSQEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117
           Y+CF C V G+ L F+       F+++++ LA+  G+ +P  +         K   + + 
Sbjct: 59  YHCFGCGVHGNVLDFVMEFDRLDFVDAIEELASQLGLEVPRENDGNTTHRGPKAADKRNY 118

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             L+   + F+   L+    +    YL  RG+    ++ F +G+ PD    +R    +  
Sbjct: 119 YELMGQVSQFYQSQLRTKEGEIAVDYLKGRGLSGEIVKKFSIGFIPDQWDMVRSRFGRDN 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S++ ++  G+LI+ DN    YDRFR R++FPI   RG+VI FGGR +    + KYLNSP
Sbjct: 179 ESQKALVNTGMLIENDNGRR-YDRFRGRVMFPIHDRRGRVIGFGGRVI-GDGTPKYLNSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHKG+ LY  +  L   ++  +          I++VEGYMDV++L Q GV   V+S
Sbjct: 237 ETDIFHKGRELYGLYEVLQTYREPEK----------IMVVEGYMDVVALAQFGVDYAVAS 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGT+ T   ++ L++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L  GE
Sbjct: 287 LGTSTTGDHIQSLFRQTSTVVCCYDGDRAGRDAAWRAMEQALPYLTDGRQLKFMFLPDGE 346

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS IR  GK AFE  + +++PL + L+          + + +A+L       I+ +  
Sbjct: 347 DPDSCIRAEGKDAFELRVNQAMPLSEFLFNSLMLQVDTTSREGKAKLSTLAVPLIDKVPG 406

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             LR Y  + +   L    +  + +         K       K                 
Sbjct: 407 GTLRLYLRELLGKNLGLPDEAQLQQLISMHGKESKPVGQVQIKRTPM------------- 453

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ--KLWSFLFSDFVEQKYFLPE 535
                    ++  LI HP  + +   E     +DN EL    L   +             
Sbjct: 454 -------REVIALLIQHPNFVTQL--EFDMSAFDNIELSGLNLLLSIVDKCRNNPNISTG 504

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ +         ++ +L         W      +  +    +  A+        + +Q 
Sbjct: 505 QLLEHWRGTKNEAMMAKLAA-------WELPLSKDEDNSLDVFLDAMDKIIDQ-CVEQQI 556

Query: 596 EEIEKQIAQVTAKGEA 611
           E+++ +   +    + 
Sbjct: 557 EQLQTKSRTIGLSVDE 572


>gi|291520419|emb|CBK75640.1| DNA primase [Butyrivibrio fibrisolvens 16/4]
          Length = 569

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 148/588 (25%), Positives = 247/588 (42%), Gaps = 37/588 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y  + I+++     I ++I QYV+  ++ +      Y+  CPFH+EKT SF  +  K  Y
Sbjct: 4   YSDEIIEEVRTRTNIVDVISQYVNLQKKGSQ-----YFGLCPFHNEKTGSFSVSPQKQMY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           YCF C   G+  SFL A    +F E+V+ LA   GV LP      +  ++   ++ L  +
Sbjct: 59  YCFGCGAGGNVFSFLMAYENMTFKEAVEELAPKCGVTLPQREMTAQERQRADKRSKLFEI 118

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A  +++  L++   K+   Y   R +    +  F LG       SL ++LR KG+ +
Sbjct: 119 NKEAAAYYYKLLRSDVGKQAMDYFTGRQLSVETMHKFGLGCTSKYSDSLYKYLRGKGYDD 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             + + GL I  D     +D+F NR +FPI  + G+V+AFGGR +      KYLNSPET 
Sbjct: 179 NILKDCGL-ITIDEKRGGHDKFWNRAMFPIFDANGKVVAFGGRVM-GDGEPKYLNSPETE 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K K L+  + A    +               IL EGYMDV+SL QAG  N V+SLGT
Sbjct: 237 IFNKSKTLFGLYFARKTRR------------EQFILCEGYMDVISLHQAGFDNAVASLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE    +L +    + L +D D  G +AA +AI +       G     + +S  +DPD
Sbjct: 285 ALTEGHAGILKRYVKDVYLSYDSDGAGQKAALRAIPI---LKNAGISCRIINMSPYKDPD 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH-LKNCINHIKDQK 419
            FI+  G   +EK I  +        +          P+++++ +    +  +     Q 
Sbjct: 342 EFIKNLGAEEYEKRIQNAENSFMYQVRMLQNKFDMTDPEKKSDFQKEAARMIVTEFPTQL 401

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y++++  +               G+      R        QR              
Sbjct: 402 ERENYTESVAAKFNIPKDALAKYILELGQSGITAKRDSGSAEDHQR-----KAFKPKDDG 456

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             + +  LL  ++ +PAI  +    +    +++     +   +F    E        I  
Sbjct: 457 MKMSQRLLLTWIVENPAIFPKISPYVQPEDFEDGVYHTVADEVFKYCNEGNPVDTARIVD 516

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
              E    + +  L                +  D+ +  ++ L   KR
Sbjct: 517 LFMEEEERKTVAALFNTSVGEL-------TDNSDLSKALKETLLRIKR 557


>gi|167758409|ref|ZP_02430536.1| hypothetical protein CLOSCI_00749 [Clostridium scindens ATCC 35704]
 gi|167664306|gb|EDS08436.1| hypothetical protein CLOSCI_00749 [Clostridium scindens ATCC 35704]
          Length = 591

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/635 (24%), Positives = 269/635 (42%), Gaps = 52/635 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I+++     I ++I  YV   ++ +      Y+  CPFH+EK+PSF  +  K 
Sbjct: 1   MYYSDEVIEEVRSRNDIVDVISGYVKLQKKGS-----SYFGLCPFHNEKSPSFSVSQQKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118
            YYCF C   G+  +FL      SF+E+++ LA  AGV LP      + + +   +  L+
Sbjct: 56  MYYCFGCGAGGNVFTFLMEYENYSFVEALRYLADRAGVELPEQEYSKEAKARADTKAILL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + + A  +F+  LK ++  +   YL  R +    I+ F LGYA      L ++LR KG+
Sbjct: 116 EINKAAAQYFYAQLKGSQGAQALSYLKNRELGDDTIKAFGLGYANKYSNDLYKYLRSKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            +E I +AGL I  D    +YD+F NR++FPI  +  +VI FGGR +      KYLNSPE
Sbjct: 176 QDEMIAKAGL-ITVDERQGAYDKFWNRVMFPIMDANSRVIGFGGRVM-GDGKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K +NLY    A                  + +L EGYMDV+SL QAG  N V+SL
Sbjct: 234 TMIFDKSRNLYGLNRAR------------STKKPYFLLCEGYMDVISLHQAGFANAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     L+ +    + L +D D+ G +AA +AI +       G     + +   +D
Sbjct: 282 GTALTPGHASLIKRYVQEVYLTYDSDEAGTKAALRAIPI---LRDVGITARIIRMEPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AFE+ I ++        +   +N   ++P+ + +    +   +    ++
Sbjct: 339 PDEFIKNLGAEAFEERIGKARNGFMFSLEILEKNYDMHSPEGKTDFMKEVARRLAQFDEE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+       F+              + A       P +R   +   K +   
Sbjct: 399 IERGNYIEAVAGAYHVGFEDLRKLVG-------RMAIQTGLAKPVERPKSTQGKKKEKED 451

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LL  L +  A+ ++  + +    +     + +   L+  + E+    P  I 
Sbjct: 452 GILKSQKILLTWLTSDEAVFRQIEKYITPADFSEGIYRTVAQLLYEQY-EKHDVNPARIM 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               +      +  L          +   E      ++   Q   +  +        EE 
Sbjct: 511 NHFTDEEEHREVASLFH--------TKIKELTTAKEQEKALQETVIRIKNHS----IEEA 558

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            K +     KG        +  L     ++  ++ 
Sbjct: 559 TKMLDPTDIKG--------LQQLMNAKRELQDLQK 585


>gi|21674406|ref|NP_662471.1| DNA primase, putative [Chlorobium tepidum TLS]
 gi|21647588|gb|AAM72813.1| DNA primase, putative [Chlorobium tepidum TLS]
          Length = 625

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 174/639 (27%), Positives = 276/639 (43%), Gaps = 38/639 (5%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I ++     I +++  YV             + A  PF  EKTPSF  +  K  Y CFS 
Sbjct: 2   IDEVRQSTDIVDVVSDYVRLHPSGR-----HFKALSPFTQEKTPSFIVSPDKQIYKCFSS 56

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKIQTDLIRLIEVATD 126
              G+  +F+  +   SF E+V+ LA  AG+ +      K ++K+K +      +  A  
Sbjct: 57  GKGGNVFTFVMEMEKVSFPEAVEMLAKRAGIDIGKYQQQKAKEKDKREASQFDTLRWAAK 116

Query: 127 FFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
            FH +L++        Y   +RG++   I  F LG+AP+S   L     + G   E ++ 
Sbjct: 117 LFHGTLQSEAGSAALAYLTGKRGLEPGTIRRFGLGFAPESWDHLLHAAERDGAPVEHLVS 176

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILFHK 244
            GLL       T YD FRNR+IFPI +  GQV  FGGRTLS   E+ KY+NSPE+  F K
Sbjct: 177 LGLLTRHPKRNTLYDTFRNRIIFPILTVGGQVAGFGGRTLSNDAETPKYINSPESAFFEK 236

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            K LY    A N +++              ILVEGYMDV+++ QAG  N V+S GTALT 
Sbjct: 237 SKLLYGMHAAKNEIRRQ----------ETAILVEGYMDVIAMHQAGFTNTVASCGTALTR 286

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
           YQ ++L + + R++  +DGD+ G ++    ID++L     G     V+L   EDPDSFIR
Sbjct: 287 YQAKILKRYTSRVLFLYDGDNAGKKSMLAGIDILLSE---GLTPWVVMLPGNEDPDSFIR 343

Query: 365 CYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            YGK AF  +L  E     D   +   +     +PD  ++    +   I  I D   +  
Sbjct: 344 NYGKEAFLGELESEKSSFQDFQLRCYQDAGWMESPDTASKAISAMTRSIALIADPVQKEL 403

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y   +  +L    Q      +            + +  P+ + +             S+ 
Sbjct: 404 YIDELSKKLDLSRQTLREVMAASDTGGSTRESRQRRSEPAPQPLA-------RQAPLSVT 456

Query: 484 EAALLLTLINH----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-EIH 538
           E   L  LI        +L       +    ++   Q ++S L   F E        +I+
Sbjct: 457 ERTFLEALIESTFYGNEVLDFAASHESMFHLEHPAAQTIFSHLVRRFREMNDRDGHLDIN 516

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK---RFRLLSRQK 595
             +   G  +    L   +      + TT     ++ Q  ++ L+ +    +  +L   +
Sbjct: 517 SEISSIGMEDA-SNLAFDILFRLPVNETTRLTPAELEQHARRCLSHFLVAVKALVLEPLQ 575

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +E +K IAQ+ +     +   L   L E + Q   +E +
Sbjct: 576 KEKQKIIAQLQSATSTHEQERLSRELLEHNKQFRAMEQE 614


>gi|317122933|ref|YP_004102936.1| DNA primase [Thermaerobacter marianensis DSM 12885]
 gi|315592913|gb|ADU52209.1| DNA primase [Thermaerobacter marianensis DSM 12885]
          Length = 713

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/548 (27%), Positives = 240/548 (43%), Gaps = 32/548 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 + ++   + I  +IG+YV   R        +Y A CPFH E+TPSF  + +K  
Sbjct: 3   RLDEHVVDEIRQRLDIVEVIGEYVPLRRAGR-----EYVALCPFHQERTPSFTVSPAKQM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           +YCF C V GD  +F+    G +F E+V  LA  AGV LP     P   +    Q  L R
Sbjct: 58  FYCFGCQVGGDVFTFVMKKEGWTFPEAVAELARRAGVTLPERPLSPGQRRARDRQEQLAR 117

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           ++++A   F  +L++   +    YL+ERG+     + + LGYAP     L   L+++G  
Sbjct: 118 VLDLAAALFRQALRSPAGEAARTYLEERGLPPAIWDRYGLGYAPAGWDGLVRALQKRGVP 177

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              ++EAGL          YDRFR+RL+FPI   RG+V+ FGGR+L  G+  KYLNSPET
Sbjct: 178 PALMVEAGLA-QARPGGGYYDRFRHRLMFPITDPRGRVVGFGGRSL-DGQEPKYLNSPET 235

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN-VVSSL 298
            LF K +  Y    A   L+           +   ++VEGYMD +++ +AGV    V+SL
Sbjct: 236 PLFSKRRLWYGLDWARPRLR----------ETGTAVVVEGYMDAIAVDRAGVGYAAVASL 285

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+L+E Q+ LL +   ++++ +D D  G RA  + ++L       G  V    L  G D
Sbjct: 286 GTSLSEEQVELLARYVQQVIIAYDADAAGQRATLRGLEL---FADAGVEVRVAQLPPGRD 342

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD  +R  G  A  +++  ++P+V+  +++        TP  RA     L   +  ++  
Sbjct: 343 PDDVVRREGPDALRRVLDAAVPVVEYRFRQVMAEVDTATPRGRARAAAELAPWLARVRHP 402

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW-----KKNARHRDQKGPSQRLMQSSLVK 473
             R  Y +     L         E     R       +   R       + R     +  
Sbjct: 403 VERGEYVRRYALSLGLEEGVLWQEVRRAARGLRRAASQAAGRPGGNNVQAVRHTNRRVPV 462

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            ++    +  E  L+   + HP         L    +     + L+              
Sbjct: 463 EEVPAGIARAERGLVAASLFHPEWRDYIAARLEPGDWVTPAHRLLF----ELAGTMDPVD 518

Query: 534 PEEIHQRL 541
           P  +  RL
Sbjct: 519 PGRMLSRL 526


>gi|153853335|ref|ZP_01994744.1| hypothetical protein DORLON_00731 [Dorea longicatena DSM 13814]
 gi|149754121|gb|EDM64052.1| hypothetical protein DORLON_00731 [Dorea longicatena DSM 13814]
          Length = 597

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 153/627 (24%), Positives = 266/627 (42%), Gaps = 47/627 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I+++     I ++I  YV   ++ +      Y+  CPFH+EK+PSF  +  K 
Sbjct: 6   MYYSDEIIEEVRSRNDIVDVISTYVKLQKKGS-----SYFGLCPFHNEKSPSFSVSRQKQ 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118
            YYCF C   G+  +FL      +F+E+++ LA  AGV LP      + +++   +  L+
Sbjct: 61  MYYCFGCGAGGNVFTFLMEYENYTFVEALKYLADRAGVELPEEEYSREAKERADTRAILL 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + + A  +++  LK++R      Y  +R +    I+ F LGY+      L  +L+ KG+
Sbjct: 121 EINKAAAQYYYIQLKSSRGAVGLEYFKKRKLSDETIKAFGLGYSNKYSDDLYRYLKSKGY 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            ++ I +AGL I  D     YD+F NR++FPI     +VI FGGR +      KYLNSPE
Sbjct: 181 KDDMIAKAGL-ISIDEKNGVYDKFWNRVMFPIMDVNSRVIGFGGRVM-GDAKPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K +NLY    A                  + +L EGYMDV+SL QAG  N V+SL
Sbjct: 239 TMIFDKSRNLYGLNRARR------------TKKPYFLLCEGYMDVISLHQAGFTNAVASL 286

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     L+ +    + L +D D  G RAA +A+ +       G     + +   +D
Sbjct: 287 GTALTPGHAALIHRYVQEVYLTYDSDGAGTRAALRAMPI---LRDAGITAKIIRMEPYKD 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AFE+ I  +  +     +   ++   N+P+ + E        +   +++
Sbjct: 344 PDEFIKNLGAEAFEERIASARNVFMYSLEVLEKDYDMNSPEGKTEFMKETARRLTQFEEE 403

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+       F++            K   +    K   +     +  K K   
Sbjct: 404 IERNNYIEAVAKVYHVGFEELRKLV------GKMAVQTGLAKPAERPREIQNNRKNKKED 457

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              + +  LL  LI    I  +  + +    +     +K+   L+  + E+    P +I 
Sbjct: 458 GILVSQKVLLTWLIESEEIFHQIEKYITPEDFSEGLFRKVAELLYEQY-EKHEANPAQIM 516

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               +      +  L          +   E   V  ++   Q   L  +   +    + +
Sbjct: 517 NHFTDEEEHREVAGLFH--------TKIKELTTVKEQEKALQETILRVKEHSIEEATKNL 568

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVH 625
                      + +    L++   ++ 
Sbjct: 569 --------DPTDIQGLQRLMNEKRKMQ 587


>gi|238782837|ref|ZP_04626866.1| DNA primase [Yersinia bercovieri ATCC 43970]
 gi|238716260|gb|EEQ08243.1| DNA primase [Yersinia bercovieri ATCC 43970]
          Length = 582

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/598 (28%), Positives = 282/598 (47%), Gaps = 46/598 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQIERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+  SL      +   YL  RG+    I+ F +G+AP    +  +   + G S
Sbjct: 119 LMESLSAFYQQSLNGQNANQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGES 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  +++  +YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RTALNDAGMLV-TNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A           V   + + +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEA----------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T   ++LL++ +  ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ + E+ PL   L++        ++PD RA+L       I+ +  + 
Sbjct: 347 DTLVRKEGKDAFEQRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +            +    K  +                
Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQADNTNTYQPPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       Q +   +        L+  L    + Q      ++
Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVETCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +  F + L+ L     +  +     E   VD       ++   ++  L++R +
Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDMVEPTFVDTLASLYDSILEQRQETLIARDR 559


>gi|111018224|ref|YP_701196.1| DNA primase [Rhodococcus jostii RHA1]
 gi|110817754|gb|ABG93038.1| DNA primase [Rhodococcus jostii RHA1]
          Length = 644

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/651 (20%), Positives = 240/651 (36%), Gaps = 40/651 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   +  +     I +++G+YV   R             CPFHDEK+PSFH   + G 
Sbjct: 4   RIPDRDVAAIRERTRIEDIVGEYVSLKRAG----GDSMKGLCPFHDEKSPSFHVRPNHGH 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           Y+CF C   GD  SFL  +   SF+E+V++LA      +         +     ++ L+ 
Sbjct: 60  YHCFGCGEGGDVYSFLQKIDHISFVEAVEQLADRLNYTISYEGGGTSVQRDRGTRSRLVA 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A +F+   L+    +    YL ER  D+ A + F  GYAPD    L +HL  KGF 
Sbjct: 120 ANAAAQEFYSARLQEPDAQAARDYLTERNFDAQAAQQFGCGYAPDGWDILTKHLLGKGFD 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            +++  AGL           DRF  RL++PIR+  G VI FG R L   +++  KY+N+P
Sbjct: 180 VKELEAAGLSK--AGRRGHIDRFHRRLLWPIRNLSGDVIGFGARKLFDDDTMPGKYVNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K + L+    A   + K              ++VEGY DV+++  AGV+  V++
Sbjct: 238 ETMLYKKSQVLFGLDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVKTAVAA 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV----NFVLL 353
            GTA  E  L +L +L                         +       ++       + 
Sbjct: 288 CGTAFGEDHLAMLRRLLMDDSYFRGEIIYTFDGDAAGQAAAMKAFEGDQKMAGQTFVAVA 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP    +  G  A   L+    P+ + + K         T + R E        + 
Sbjct: 348 PEGMDPCELRQKSGDAAVRDLVARRTPMFEFVVKSILTEHDLETAEGRVEALRRTVPVVA 407

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS--- 470
            IK+  LR  Y+  +   +       + +        + + R      P ++  +     
Sbjct: 408 QIKEATLRDSYAVQLSGWVGWDDIAAVRQRVRDEARKRASTRGSLPAPPKKKAARDEDQD 467

Query: 471 -------LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                  L + + +      +   L   + +PAI    +  L    + +     +   + 
Sbjct: 468 TPQLPVGLTRPRPNDPTLWAQREALKGALQYPAIAGTVFDSLPVETFTHPTYVVIRESMI 527

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           +           E    +           L  ++    L          D    Y   + 
Sbjct: 528 ASGGTSAGLGGGEWVDAVSRGVDDVTAASLVSELAVEPLP------AEEDTVPRYISGVI 581

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              +   +  Q  E++ ++ +++    +++   L+  L  +      +  Q
Sbjct: 582 ARLQEVWVGEQVAELKSKLQRISPATASDEFHSLLGDLVALEQYRRSLLDQ 632


>gi|333027298|ref|ZP_08455362.1| putative DNA primase [Streptomyces sp. Tu6071]
 gi|332747150|gb|EGJ77591.1| putative DNA primase [Streptomyces sp. Tu6071]
          Length = 637

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/661 (21%), Positives = 267/661 (40%), Gaps = 54/661 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + +K +   +PI +++ +Y+           G+    CPFHDEK+PSF  + +KG 
Sbjct: 4   RIKDEDVKAVRDAVPIDSVVAEYLQLKNAG----GGNLKGLCPFHDEKSPSFQVSPAKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIR 119
           ++CF C   GD ++F+  +   SF E+V+RLA  AG+ L   +      ++   +  LI 
Sbjct: 60  FHCFGCQEGGDTITFVMKVDHLSFSEAVERLAGQAGITLRYEEGGYNPTQQRGERIRLID 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A  ++   L     +    +L ERG D  A   F +GY+P     L  +LR +GF+
Sbjct: 120 AHRAAAKYYEEQLAGPEAEIGRKFLAERGFDQSAAAHFGVGYSPAGWDHLTRYLRGQGFT 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           + ++I +GL           DRFR RL++PI+   G ++ FG R L + ++  KYLN+PE
Sbjct: 180 DRELITSGL-SQESRGGRPIDRFRGRLMWPIKDIGGDIVGFGARRLREDDNGPKYLNTPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K + LY    A   + ++ R           ++VEGY DV++   +GV   V++ 
Sbjct: 239 TPVYRKSQVLYGIDLAKKDIARASRA----------VVVEGYTDVMACHLSGVTTAVATC 288

Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           GTA     +++L +L       R++  FDGD  G +AA +A +               + 
Sbjct: 289 GTAFGTEHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIA 345

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DP       G+ A  +L+   +PL +   ++        TP  RA         + 
Sbjct: 346 PDNMDPCDLRLAKGEQAVAELVEPRVPLFEFALRQIVSRYDLETPAGRAAALDEAAPVVA 405

Query: 414 HIKDQKLRYYYSQAIRDRLQ------QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
            +K+  LR+  +  +   L       Q   + +   + + R  +        + P+    
Sbjct: 406 SVKNVALRHAVAVQLAGMLGYGPMDQQEVVRRVATVARWAREHRGEPLPGGPRRPATATS 465

Query: 468 QSSLVKGKLSKKPSLR------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
            +    G       LR      E  LL   +  P ++   +       +       +   
Sbjct: 466 GAPQRPGNSGPALILRNPAHMTERELLKLALQRPELVSPAFDAYEIDEFTAEPYAAVRQA 525

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +      ++                   L  +     D  + +  TE  +  +R+     
Sbjct: 526 IADAGGAEEGVHDAM-----------AYLTAVREAAPDDRVRAMVTELAVEPIRRRVVDE 574

Query: 582 LALYKRF-----RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           +   ++      R + R+  E++    +V+A+G+  + A + S L  +      ++ Q A
Sbjct: 575 IYASEQLVRVRVRAVQRRVTELQGTFTRVSAQGDQARAAEVQSELWVLEQYGRALQQQGA 634

Query: 637 M 637
            
Sbjct: 635 A 635


>gi|300718454|ref|YP_003743257.1| DNA primase [Erwinia billingiae Eb661]
 gi|299064290|emb|CAX61410.1| DNA primase [Erwinia billingiae Eb661]
          Length = 581

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 174/631 (27%), Positives = 283/631 (44%), Gaps = 58/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATLYGLEVPYESGTGPSQLERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    +F+  +L  ++      YL  RG+    I+ F +GYAP    +  +   +    
Sbjct: 119 LMGGLNEFYQQALSQSQSSGAREYLANRGLSDAVIKHFSIGYAPAGWDNALKRFGRNQDD 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPI   RG+VI FGGR L      KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIHDKRGRVIGFGGRVL-GDGMPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  +          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQKNHPEPAK----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTPEHIQLLFRTTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+          +PD RA+L       I  +  + 
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFDSLLPQVDLRSPDGRAQLSTLALPLITQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +         +  +    K  +                
Sbjct: 407 LRIYLRQELGNKLGILDDSQLDKLMPKLGEKARPPQQPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  LI +PA+       + L            L+  L S  V        ++
Sbjct: 452 -----RILIGLLIQNPALATTVPPLEGLEASDLAGFP---LFVELVSTCVAHPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +      F + L+ L                 + D  +   Q          L R+ EE
Sbjct: 504 LELYRGTNFSQSLETLATW----------NHMIVEDEVETMFQDSLASMYDAALERRLEE 553

Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627
           +   IA+    G  +E+     ++   +  +
Sbjct: 554 L---IARDRTHGLNSEERREFWTLSQALAKK 581


>gi|291550177|emb|CBL26439.1| DNA primase [Ruminococcus torques L2-14]
          Length = 592

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 157/641 (24%), Positives = 273/641 (42%), Gaps = 51/641 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I+++     I ++I  YV   ++ +      Y+  CPFH+EK+PSF  +  K 
Sbjct: 1   MYYSEELIEEVRSRNDIVDVISGYVRLQKKGS-----SYFGLCPFHNEKSPSFSVSRQKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+  +FL      SF+E+V+ LA  AG+ LP      + ++K  +++ ++
Sbjct: 56  MYYCFGCGAGGNVFTFLMEYENFSFVEAVKFLADRAGIELPEMEYSKEAKEKADLKSTIL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A  +F+  LK  R  + + YL  R +    I  F LG++      L ++LR+KG+
Sbjct: 116 EMNKLAAKYFYVQLKLERGSQAYSYLKNRELSDETITAFGLGFSNKYSDDLYKYLREKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           SE+ I +AGL I+ D     YD+F NR++FPI     +VI FGGR +      KYLNSPE
Sbjct: 176 SEDLIRQAGL-INTDERQGVYDKFWNRVMFPIMDVNNRVIGFGGRVM-GDGKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K +NLY    A              +   + +L EGYMDV+SL Q+G  N V+SL
Sbjct: 234 TVVFDKSRNLYGLNRAR------------TSRKPYFLLCEGYMDVISLHQSGFTNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     L+ +    + L +D D+ G RAA +A+ +       G     V +   +D
Sbjct: 282 GTALTAGHAALIKRYVQEVYLTYDSDEAGTRAALRAVPI---LREAGISAKVVRMDPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G   +EK I  +        +   +    N+P+ + +    +   +   +D+
Sbjct: 339 PDEFIKNLGAEEYEKRIHAARNGFMFSLEMLEKQYDMNSPEGKTDFFKEVSRRLLEFEDE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+           ++  S      K        +  ++        K +   
Sbjct: 399 LERNNYIEAVA------TAYRVSRESLEKMVAKMAVNAGMARPVARPKRAEGSEKKQKED 452

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                + ALL  +I+   +  +  Q ++   +  +  + +   L+    +     P +I 
Sbjct: 453 GILTSQKALLTWMIDDDRLFDQISQYISPGDFTESLYRTVAELLYEQRKQG-ALNPAKIL 511

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               E         L          +   E    + R+   Q   L  +   +  Q   +
Sbjct: 512 NHFTEEEDHREAASLFN--------TRIKELRTKEEREQALQETILRVKSYSIEHQTMNL 563

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                              +  L E   ++  +++    I+
Sbjct: 564 ------------DPTDMRGLQHLMEEKRKLENLKNLNITIQ 592


>gi|229180571|ref|ZP_04307913.1| DNA primase [Bacillus cereus 172560W]
 gi|228602995|gb|EEK60474.1| DNA primase [Bacillus cereus 172560W]
          Length = 598

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/630 (25%), Positives = 276/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL  RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASPTWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSVSFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVAKPSQVVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++    +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +          S     N     +  Q  L   +R R    +K E
Sbjct: 519 LSWLSDEKLKNIITDI----------STDEFINPEYTEEVLQGHLETLRRHRE-KLEKME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  ++ Q+      E     ++ L     +
Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|210615119|ref|ZP_03290450.1| hypothetical protein CLONEX_02664 [Clostridium nexile DSM 1787]
 gi|210150427|gb|EEA81436.1| hypothetical protein CLONEX_02664 [Clostridium nexile DSM 1787]
          Length = 591

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/641 (24%), Positives = 280/641 (43%), Gaps = 52/641 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +  D I+++     I ++I  YV   ++ +      Y+  CPFH+EK+PSF  +  K 
Sbjct: 1   MYFSEDLIEEVRQKNDIVDVISGYVKLQKKGS-----SYFGLCPFHNEKSPSFSVSRGKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C V G+  +F+      SF+E+ + LA  AGV +P      + +++  ++  L+
Sbjct: 56  MYYCFGCGVGGNVFTFIMEYENYSFVEAFKMLAERAGVDIPEVEYSKEAKERADLKATLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A  +F+  LK  + K  H YL  RG+    I  F LGY+      L  +L+ KG+
Sbjct: 116 EINKLAAKYFYAQLKTEQGKLAHTYLTGRGLSEETITAFGLGYSNKYSDDLYRYLKTKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            +E +++AGL I  D    ++D+F NR++FPI     +VI FGGR +      KYLNSPE
Sbjct: 176 KDELLVKAGL-ISVDERHGAHDKFWNRVMFPIMDVNNRVIGFGGRVM-GDAKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K +NLY    A              +   + ++ EGYMDV+SL QAG  N V+SL
Sbjct: 234 TEVFDKSRNLYGLNRAR------------TSRKPYFLICEGYMDVISLHQAGFTNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     L+ +    + L +D D+ G RAA +A+ +       G     + +   +D
Sbjct: 282 GTALTTGHASLIKRYVNEVYLTYDSDEAGTRAALRAMPI---LKEAGITAKIIRMEPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AFE+ I ++        +   +    N+P+ +          +   +++
Sbjct: 339 PDEFIKNLGTEAFEERINKARNGFLFSLEILEKEYDMNSPEGKTAFHKEAAKRLTMFEEE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+ ++ +  +++             K A    Q  P++R  Q++  + +   
Sbjct: 399 IERNNYIEAVAEKYRIGYEELKKLVG-------KMAIQMGQATPAERPKQTANREKQKED 451

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LL  LI + A+  +  + +    +     + +   L+  + E     P ++ 
Sbjct: 452 GNLKSQKILLTWLIENEALFAQIKKYIVPEDFTKELYRTVAEILYEQY-EAGEVNPAKVM 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               +      + +L          +   E    + ++   +   +  ++  +       
Sbjct: 511 NHFTDEEEHREVAELFH--------TKIRELTTKEEQEKALKETIIRVKYNSIEF----A 558

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            K +      G        +  L E    +  ++     I+
Sbjct: 559 TKMLNPTDIVG--------LQRLMEAKKSLQDLQKMHISID 591


>gi|206971308|ref|ZP_03232259.1| DNA primase [Bacillus cereus AH1134]
 gi|206734080|gb|EDZ51251.1| DNA primase [Bacillus cereus AH1134]
          Length = 598

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/630 (25%), Positives = 272/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL  RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASPTWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSVSFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVAKPSQVVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++    +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E           Q      R      +K E
Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  ++ Q+      E     ++ L     +
Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|251791057|ref|YP_003005778.1| DNA primase [Dickeya zeae Ech1591]
 gi|247539678|gb|ACT08299.1| DNA primase [Dickeya zeae Ech1591]
          Length = 584

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/618 (27%), Positives = 288/618 (46%), Gaps = 50/618 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LAA+ G+ +P        + +   +  L  
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVESIEELAAMHGLDVPYEAGTGPTQLERHQRQSLYE 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+ H+LK         YL  RG+    I+ F +G       ++ +   + G +
Sbjct: 119 LMEQLSAFYQHTLKQPAGAPAREYLARRGLSDEIIQQFAIGCTLPGWDNVLKRFGRSGEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  + +AG+L+  + +  +YDRFR+R++FPIR  RG+VIAFGGR +    + KYLNSPET
Sbjct: 179 QTTLTDAGMLV-TNENGRTYDRFRDRVMFPIRDKRGRVIAFGGRVM-GDGTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEAQQKNPELKR----------LLVVEGYMDVVALAQFGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATDQVVCCYDGDRAGRDAAWRALETALPYLDDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ I +++PL   L+    +    +TPD R +L       I  +  + 
Sbjct: 347 DTLVRQEGKAAFEQRIEQAMPLSAFLFDSLLQQVDMSTPDGRTKLSTLALPLIGQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q +  +L  L    +            + +    K  +                
Sbjct: 407 LRLYLRQQLGHKLGLLDDSQLDRLLPKTAEQTSHYQPPRLKVTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                  L+  L+ +P +  E  +  L D+  +     +L+  L     E        + 
Sbjct: 452 -----RILIGLLVQNPRLSAEVPELALDDVEENKIAGLELFLTLVKTCNESPGMNMGLLL 506

Query: 539 QRLCERGFGELLKQLDR--QVRDAGLWSATTEANIVDVRQGYQQA----LALYKRFRLLS 592
           ++  E  + + L+ L     + +          ++ ++     Q     L   +R   LS
Sbjct: 507 EKYRESKYRKQLETLAAWDHMIEEEELEEKFRISLAELYDQLLQQRMDTLIARERTHGLS 566

Query: 593 ----RQKEEIEKQIAQVT 606
               ++   ++  + +  
Sbjct: 567 MNERKELWSLQLALTRKN 584


>gi|327440914|dbj|BAK17279.1| DNA primase [Solibacillus silvestris StLB046]
          Length = 609

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/636 (23%), Positives = 284/636 (44%), Gaps = 41/636 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +     I ++I  Y+   +R  N     Y+  CPFH E+TPSF  +  K  
Sbjct: 4   KIPEHVIEQIRSQSDIVDVISDYMQLTKRGRN-----YFGLCPFHGEQTPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-----KKEKIQTD 116
           ++CF C   G+ ++F+  +   SF +++ +L+  AG+PL +     +        K +  
Sbjct: 59  FHCFGCGAGGNAITFVMDMEHLSFPDALIKLSQRAGIPLEMELSTDQSMSNSPISKKEQQ 118

Query: 117 LIRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           +      A +F+HH L N    +    YL ERG     IE  ++G+A  +  +L   L +
Sbjct: 119 MREAHTFAVEFYHHILMNTEDGEPALNYLLERGFTREQIETHQIGWALPNWDTLSILLER 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYL 234
           KG+  E++ E+GL+I  ++  + +DRFR R++FPIR   G+ IAF GR L+   E  KYL
Sbjct: 179 KGYDPEEMAESGLIIRKESDDSYFDRFRGRIMFPIRDENGKTIAFSGRILNSDGEDAKYL 238

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHK + LYN   A   ++K          S  +IL+EG++DVL+  QAG+ N 
Sbjct: 239 NSPETPIFHKSQVLYNLDKARASIRK----------SRQVILMEGFIDVLAANQAGIYNA 288

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+++GT+LT   +  L +L  +I +C+DGD+ G  AA +A  +         +V   +L 
Sbjct: 289 VATMGTSLTPQHITKLKRLVQQITICYDGDNAGFEAAKRAAQM---LHQEQIKVEVAVLP 345

Query: 355 RGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              DPD +IR +G+ AF+  +I +    +  +       ++F   ++  +    +   + 
Sbjct: 346 DKLDPDEYIRTHGQEAFKNQIIEKPHAYIAFMMMHAKRGKNFQFENDTLQYIQEVLETLK 405

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           +      R  Y + + +      +   T+         K  +   +      ++   L +
Sbjct: 406 NNTSPTERDLYIRQLANETNISHEAISTQLRKMVADNVKEQKRDQKMVEEPTVL---LQR 462

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +        E+ LL  +++   I+ +  +E  +  + + E   ++  L   + E +   
Sbjct: 463 ERKKDATDRAESILLAHMLHDVNIVNKVLREGNNEPFIHEEYLSVFVRLIGFYEEYEMAD 522

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                + L +    ++       V DA L     +    ++    +Q        R L  
Sbjct: 523 FHRFVEVLDDHDLRKI-------VMDAALLERDPDNGEAEIIDCLKQI-----EKRRLEL 570

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + E+++    +     E  +   +   +  ++ +I 
Sbjct: 571 KIEQLKHDQKEAEKMHEHRRALEIAQQIINLNRKIK 606


>gi|30022371|ref|NP_834002.1| DNA primase [Bacillus cereus ATCC 14579]
 gi|218235617|ref|YP_002369100.1| DNA primase [Bacillus cereus B4264]
 gi|228960558|ref|ZP_04122207.1| DNA primase [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229129570|ref|ZP_04258540.1| DNA primase [Bacillus cereus BDRD-Cer4]
 gi|229152493|ref|ZP_04280685.1| DNA primase [Bacillus cereus m1550]
 gi|29897929|gb|AAP11203.1| DNA primase [Bacillus cereus ATCC 14579]
 gi|218163574|gb|ACK63566.1| DNA primase [Bacillus cereus B4264]
 gi|228631101|gb|EEK87738.1| DNA primase [Bacillus cereus m1550]
 gi|228653887|gb|EEL09755.1| DNA primase [Bacillus cereus BDRD-Cer4]
 gi|228799158|gb|EEM46126.1| DNA primase [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 598

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 158/630 (25%), Positives = 272/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL  RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSTMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSVSFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVAKPSQVVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++    +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E           Q      R      +K E
Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  ++ Q+      E     ++ L     +
Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|227543034|ref|ZP_03973083.1| DNA primase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181256|gb|EEI62228.1| DNA primase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 625

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 142/640 (22%), Positives = 246/640 (38%), Gaps = 36/640 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +  + PI  ++G+YV                  PF DEKTPSFH   + G+
Sbjct: 5   RIPEEDIDYIRENTPIEEIVGEYVQLKPAGA----DSLKGLSPFKDEKTPSFHVRPNHGY 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           ++ FS    GD  SFL  L   +F E+V+  A   G  +          +K   +  L+ 
Sbjct: 61  FHDFSSGEGGDVFSFLMKLEHLTFPEAVEYCADKIGYHINYQGGGTGTREKAGTRQRLVA 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +   A  FF   L+    +R   YL ERG  +     F  GYAP    +L +HL + GFS
Sbjct: 121 INAEAHRFFVEKLQEPEAERARAYLTERGFTAEHARHFGCGYAPGGWDTLTKHLLRMGFS 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
            E++  AG+           DRF  RLI+PI++  G VI FG R L   +   KYLN+PE
Sbjct: 181 AEELEAAGVTS--MGRRGPIDRFHRRLIWPIKNLAGDVIGFGARKLFDDDKLGKYLNTPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T+L+ K K L+    A   +                ++VEGY DV+++  AG+   V+S 
Sbjct: 239 TMLYKKSKVLFGIDLAKRNIA----------QGHQCVVVEGYTDVMAMHAAGITTAVASC 288

Query: 299 GTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  E  L+L+ +L          I+  FDGD+ G +AA +A +               
Sbjct: 289 GTAFGEDHLQLIRRLMLDDRTFRGEIIYTFDGDEAGQKAAMRAFEGSQEFSG---SSFVA 345

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP    +  G  A   LI   +P+++ + K         T + R +    +   
Sbjct: 346 VAPGGMDPCELRQDKGDVALRDLIARRMPMLEFVVKTILGQYDVGTIEGRLQAVRRVVPM 405

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I  I+D  LR  Y+  +   +  L +  ++            A     +G + +   +++
Sbjct: 406 IGAIRDPALRSQYALQLSGWVGWLNEDELSRMVEDASRRPAAAPQVATRGTAPQPTPTTV 465

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
           +           +   L   +  P +    + EL    + +   + +   + +       
Sbjct: 466 LPDPRDPALWP-QRESLKIALQAPDLAGASFDELDPEGFFHPVYRTIRDGIAAAGGASGG 524

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                    + +      +K L   +    +          D  + Y           ++
Sbjct: 525 DGKAGWIAAITDAIVDPAVKNLVSALAVEEIR------TDADHFEAYMDGAFARLEEGVV 578

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           + Q   ++  +++     + E    + S L  +     ++
Sbjct: 579 ANQISNLKATLSRTRPSDDPEAYNAMFSDLLVLEQVRQEL 618


>gi|228954577|ref|ZP_04116602.1| DNA primase [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228805234|gb|EEM51828.1| DNA primase [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 598

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 158/630 (25%), Positives = 273/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL  RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSVSFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q   + +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVAKTSQVVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++    +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E           Q      R      +K E
Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  ++ Q+      E     ++ L     +
Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|88855012|ref|ZP_01129677.1| DNA primase [marine actinobacterium PHSC20C1]
 gi|88815540|gb|EAR25397.1| DNA primase [marine actinobacterium PHSC20C1]
          Length = 627

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 156/651 (23%), Positives = 257/651 (39%), Gaps = 49/651 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ I ++     +++++G YV      +    G     CPFH+E++PSFH     GFY
Sbjct: 5   IRRNDIDEVRSRTNLADIVGDYVTLKSAGS----GSMKGLCPFHEERSPSFHVRPQVGFY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD  +FL  +   SF E+V+RLA      L   D         +  ++   +
Sbjct: 61  HCFGCGEGGDVFTFLQRMDHVSFSEAVERLAGRISYELHYEDGGAATDHGNRARILAANQ 120

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A+DFF   L     +    +L ERG D  A E F +G+AP     L +HL   GFS E+
Sbjct: 121 AASDFFVTQLATPEAEPGRAFLGERGFDQSAAERFGIGFAPRG-GVLTKHLNTLGFSSEE 179

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241
           ++ AGL I        YDRFR RL++PIR   GQ + FG R L + +   KYLN+PET +
Sbjct: 180 LVVAGL-IGKGERGEYYDRFRGRLVWPIRDVTGQTLGFGARRLLEDDKGPKYLNTPETPV 238

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           +HK + LY    A   + +          S  I++VEGY DV++   AGV   V++ GTA
Sbjct: 239 YHKSQVLYGLDLAKKDISR----------SKQIVVVEGYTDVMACHLAGVTTAVATCGTA 288

Query: 302 LTEYQLRLLWKLS-----------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
                ++++ ++              ++  FD D+ G +AA +A            +   
Sbjct: 289 FGVDHIKIVRRMIGDYDNADTTATGEVIFTFDPDEAGQKAANRAFAEEHRFAA---QTFV 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            + S G DP       G  A  +L+    P+ +   +RE       T + R         
Sbjct: 346 AVASDGLDPCDLRLKKGDGAVRRLVSTRKPMFEFKIRRELAVHDLETVEGRVAALRAAAP 405

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  I+DQ L   Y +++   L     +  +  +   R     A              + 
Sbjct: 406 VVAGIRDQALGIGYVRSVAGWLGMEPTEVQSAVNSAKRQGPSAAPAHAPSQQGSSGAPAD 465

Query: 471 LVKGKLSKKPSLR-------EAALLLTLINHPAIL-QEQYQELADIRYDNNELQKLWSFL 522
               +      LR       E   L+ ++ HP ++  E  ++L  I + +  L  +   +
Sbjct: 466 PQPEQGPSIMDLRTDASTRLERDALMAVLQHPDVVGDELIRKLTQIAFADGTLAVVRDAI 525

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            S            +      + F   +KQL          S        D    Y   +
Sbjct: 526 ASQVDRALQPGWASVVAEEVPQSFATFVKQL----------SVAPIPEREDRIPVYCVQV 575

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                 R L RQK E+   + ++  + +  +       L  +  +   +  
Sbjct: 576 TTDLVERDLLRQKRELLGVLQRMDRESDPARYVQTQRDLMRIEAERRALRE 626


>gi|329114161|ref|ZP_08242923.1| DNA primase [Acetobacter pomorum DM001]
 gi|326696237|gb|EGE47916.1| DNA primase [Acetobacter pomorum DM001]
          Length = 612

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 176/630 (27%), Positives = 292/630 (46%), Gaps = 33/630 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M     F+ +L    PI++++G+ V   R   N     +  CCPFH EKTPSF+  D   
Sbjct: 1   MAIDSAFLDELRARTPIASVVGRRVKLARSGRN-----WKGCCPFHGEKTPSFYVYDDH- 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++CF C V GD +SF+  + G +F E+V+ LA+ AG+ +P    + +++      L  +
Sbjct: 55  -FHCFGCGVHGDVISFVMQMEGKNFPEAVEELASSAGMEVPKDTRRTQEEVAHVRSLEDV 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +    + + H+L     +    YL  RG+    +E F LG+A + R  L   L  KG + 
Sbjct: 114 LAATQEIWSHALYKPEGRAGLDYLLGRGLTRETLETFGLGWASEKRGDLVSALAPKGITL 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + + EAGL+   +      + F  R+ FPIR  +G++++FGGR L      KYLN PET 
Sbjct: 174 DMMAEAGLMRVDEQGHPKGELFWGRVTFPIRDRKGRLVSFGGRIL-GDGQPKYLNGPETP 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + L+    A   ++    K V       +++VEGYMDV++L QAG    V+ LGT
Sbjct: 233 VFSKRRLLFGLDRARAAVRAPRPKGVLAPD---LVVVEGYMDVIALHQAGFTGAVAPLGT 289

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  QL  LW++    +LCFDGD  G RAA KA +  L  L     +   LL  GEDPD
Sbjct: 290 ALTPEQLEALWQVDRAPILCFDGDAAGRRAAVKAAETGLPLLKQDYSLRICLLPDGEDPD 349

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S +R  G+ A  ++   + PL ++L+   +   +   P+ERA L   L      I D+ L
Sbjct: 350 SLVRTRGRQAVAEMFAAAQPLSEVLFDLLSAGANNPGPEERAALRRRLTEVAGLIPDKTL 409

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y   + DR    F++        G       + R    P+       +       + 
Sbjct: 410 ASEYRSTLLDRFFTTFRR--------GGGKWNGPQGRKANAPASVPGAVPVN----MDQT 457

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL-PEEIHQ 539
             R+  +L  L+ HP ++ E  + L  +     E  ++ + L     E +       ++ 
Sbjct: 458 RERQRLMLELLLLHPVLVPEVEEALCRLDLP-EEFAEVRALLLDLSAEGELPDNAAALYA 516

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS--RQKEE 597
            L  +G  E ++ + R+      +SA +E++  D           +  + LL   +  +E
Sbjct: 517 WLQAQGAEETIRAVVRES-----YSAMSESDAEDPAHTVASRTQWWHFYGLLYGPQFIQE 571

Query: 598 IEKQIAQV-TAKGEAEKTAILISILHEVHI 626
           + ++IA+     G++ +   L + L  +  
Sbjct: 572 VNREIARFVEKGGDSAEWQRLQARLEAMER 601


>gi|225377780|ref|ZP_03755001.1| hypothetical protein ROSEINA2194_03431 [Roseburia inulinivorans DSM
           16841]
 gi|225210364|gb|EEG92718.1| hypothetical protein ROSEINA2194_03431 [Roseburia inulinivorans DSM
           16841]
          Length = 600

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 156/614 (25%), Positives = 257/614 (41%), Gaps = 24/614 (3%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           +  D I+++     I ++IGQYV   ++ +      Y+  CPFH+EKT SF  + +K  Y
Sbjct: 4   FSDDIIEEVRSRNDIVDVIGQYVHLTKKGS-----TYFGLCPFHNEKTGSFSVSPNKQMY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
           YCF C   G+  +F+      +F E+++ LA  AGV LP  +    +K +   +  L+ +
Sbjct: 59  YCFGCGAGGNVFTFMMQYENFTFGEAMEALADRAGVALPKQEYSAAQKREADKKQRLLEI 118

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A  +F+  L+N R K    Y  +R +    ++ F LGY+      L  +LR KG+ +
Sbjct: 119 NKEAARYFYTLLRNDRGKHALAYFQKRELSEETMKKFGLGYSDQYSDDLYRYLRSKGYED 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E + E+GL+   +     YD+F NR +FPI     +VI FGGR +      KYLNSPET 
Sbjct: 179 EILKESGLVTIDERRGG-YDKFWNRAMFPIMDVHNKVIGFGGRVM-GDGEPKYLNSPETP 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K +NLY    A                    +L EGYMDV++L QAG  N V+SLGT
Sbjct: 237 IFDKSRNLYGLNFAR------------TTKKPQFLLCEGYMDVIALHQAGFDNAVASLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT     LL + +  + L +D D  G++AA +AI +       G     + +   +DPD
Sbjct: 285 ALTAGHANLLKRYTKEVYLTYDSDGAGVKAALRAIPI---LKEVGITTKVINMRPHKDPD 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FI+  G  A++  I  +        +   +      P+ ++     +   +    ++  
Sbjct: 342 EFIKALGAEAYQDRIDHAENSFMFEIRILEQQYDMKDPESKSAFYHEVAKKLCSFTEKIE 401

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y QA+ ++     Q        YG   +   +   Q         +S    K     
Sbjct: 402 RDIYVQAVAEKYMLPTQDLQRLVGKYGMQMEGIRKQPTQLKTGINEKNASARGIKKEDGM 461

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              +  LL  LI +  +  +  + +A   +      K+   LF  F E     P +I   
Sbjct: 462 KQSQKLLLTWLIENTGLYHKIKKYIAPKDFTEEIYHKVAEVLFQQFEESGEANPAKIVSM 521

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             +    + +  L              E  + +     +Q    Y+   L       + +
Sbjct: 522 FPDEEAQKEIAALFNARIHEIESKEDREKALKETIIRIKQNSIKYRSGHLAPTDMAGLMQ 581

Query: 601 QIAQVTAKGEAEKT 614
            +       E EK 
Sbjct: 582 LVTDKRDLEELEKL 595


>gi|120404772|ref|YP_954601.1| DNA primase [Mycobacterium vanbaalenii PYR-1]
 gi|119957590|gb|ABM14595.1| DNA primase [Mycobacterium vanbaalenii PYR-1]
          Length = 649

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 136/654 (20%), Positives = 251/654 (38%), Gaps = 44/654 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +   + + +++G YV   R             CPFHDEK+PSFH   + G 
Sbjct: 11  RIPDRDIAAIRERVNVEDVVGDYVQLRRAGA----DSLKGLCPFHDEKSPSFHVRPNHGH 66

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118
           ++CF C   GD  +FL  +   SF+E+V+ LA   G  +         +++    ++ L+
Sbjct: 67  FHCFGCGEGGDVYAFLQKIEHVSFVEAVELLADRVGYTITYTGASTTNVQRDRGSRSRLL 126

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
                A +F+  +L++A       YL +R  D+ A   F  G+AP    +L +HL++KGF
Sbjct: 127 AANAAAQEFYAEALQSAEAAPARQYLLDRNFDAAAAATFGCGFAPSGWETLTKHLQRKGF 186

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
             +++  AGL  +        DRF  RL++PIR+S G+VI FG R +   + +  KY+N+
Sbjct: 187 EFKELEAAGLSRE--GRRGPMDRFHRRLLWPIRTSAGEVIGFGARRIFDDDPMEAKYVNT 244

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET+L+ K   L+    A   + KS R           ++VEGY DV+++  AG    V+
Sbjct: 245 PETVLYKKSSVLFGLDLAKRDIAKSHRA----------VVVEGYTDVMAMHLAGETTAVA 294

Query: 297 SLGTALTEYQLRLLWK-----LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           S GTA  +  L LL +        R  L F  D      A           + G     V
Sbjct: 295 SCGTAFGDSHLSLLRRLMMDDNWYRGELIFVFDGDAAGQAAALKAFDGDQQVAGKSFVAV 354

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL--EIHLK 409
             + G DP       G  A   L+   +P+ +   +    +      D +A++       
Sbjct: 355 -AADGMDPCDLRLKSGDGALRDLVARRIPMFEFAVRSLIPSGDALDNDPQAKVDALRQCV 413

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKY---ITEHSGYGRYWKKNARHRDQKGPSQRL 466
             +  I+D  LR  Y++ +        +             R      R R         
Sbjct: 414 PLVARIRDYALRDEYARRLAGWTGWNDEGQVLNRVREEAAKRGMPDRGRRRGASAAQTPP 473

Query: 467 MQSSLVKGKLSKKPSLR------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
              +        +P         +   L + + +PA+    +  LA   + +     + +
Sbjct: 474 ASPATSAVPPVARPDPADPTLWPQREALKSALQYPALAGPVFDSLAAESFTHPGYTAVRA 533

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            + +           +  + + ++        L  ++    +          +    Y  
Sbjct: 534 AIEAAGGTAAGVTGAQWIEMVRDQASTPEAGSLVNELGVEAIN------ADDERLPRYIG 587

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +    +   + RQ  +++ ++ +++   + ++   L   L  +      +  Q
Sbjct: 588 GVLARLQEVWIGRQIADVKSKLQRMSPVEQGDEYHALFGDLVAMEAYRRSLLEQ 641


>gi|295839079|ref|ZP_06826012.1| DNA primase [Streptomyces sp. SPB74]
 gi|197697700|gb|EDY44633.1| DNA primase [Streptomyces sp. SPB74]
          Length = 637

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 143/661 (21%), Positives = 263/661 (39%), Gaps = 54/661 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + +K +   +PI +++ +Y+           G+    CPFHDEK+PSF  + +KG 
Sbjct: 4   RIKDEDVKAVRDAVPIDSVVAEYLQLKNAG----GGNLKGLCPFHDEKSPSFQVSPAKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD ++F+  +   SF E+V+RLA  AG+ L   +      ++   +  LI 
Sbjct: 60  FHCFGCQEGGDTITFVMKVDHLSFSEAVERLAGQAGITLRYEEGGYNPAQQRGERIRLID 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A  ++   L     +    +L ERG D  A   F +GY+P     L  +LR +GF+
Sbjct: 120 AHRAAAKYYEEQLAGPEAEIGRKFLAERGFDQAAAAHFGVGYSPAGWDHLTRYLRGQGFT 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           + ++I +GL           DRFR RL++PI+   G ++ FG R L + ++  KYLN+PE
Sbjct: 180 DRELITSGL-SQESRGGRPIDRFRGRLMWPIKDIGGDIVGFGARRLREDDNGPKYLNTPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K + LY    A   + ++ R           ++VEGY DV++   +GV   V++ 
Sbjct: 239 TPVYRKSQVLYGIDLAKKDIARASRA----------VVVEGYTDVMACHLSGVTTAVATC 288

Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           GTA     +++L +L       R++  FDGD  G +AA +A +               + 
Sbjct: 289 GTAFGTEHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIA 345

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DP       G+ A  +L    +PL +   +         TP  RA         + 
Sbjct: 346 PDNMDPCDLRLAKGEQAVAELAEPRVPLFEFALRHIVSRYDLETPAGRAAALDEAAPVVA 405

Query: 414 HIKDQKLRYYYSQAIRDRLQ------QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
            +K+  LR+  +  +   L       Q   + +   + + R  +        + P+    
Sbjct: 406 SVKNVALRHAVAVQLAGMLGYGPMDQQEVVRRVATVARWAREHRGEPLPGGPRRPAAATA 465

Query: 468 QSSLVKGKLSKKPSLR------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
            +    G       LR      E  LL   +  P ++   +       +       +   
Sbjct: 466 GAPQRPGAQGPALILRNPAHMTERELLKLALQRPELVSPAFDAYEIDEFTAEPYAAVRQA 525

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +      ++                   L  +     D  + +  TE  +  +R+     
Sbjct: 526 IADAGGAEEGVHDAM-----------AYLTAVREAAPDDRVRAMVTELAVEPIRRRVVDE 574

Query: 582 LALYKRF-----RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           +    +      R + R+  E++    +V+ +G+  + A + S L  +      ++ Q A
Sbjct: 575 IYASDQLVRVRVRAVQRRVTELQGTFTRVSTQGDQARAAEVQSELWVLEQYGRALQQQGA 634

Query: 637 M 637
            
Sbjct: 635 A 635


>gi|218899459|ref|YP_002447870.1| DNA primase [Bacillus cereus G9842]
 gi|228902816|ref|ZP_04066961.1| DNA primase [Bacillus thuringiensis IBL 4222]
 gi|228910127|ref|ZP_04073947.1| DNA primase [Bacillus thuringiensis IBL 200]
 gi|228941458|ref|ZP_04104009.1| DNA primase [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228967358|ref|ZP_04128393.1| DNA primase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228974389|ref|ZP_04134958.1| DNA primase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228980982|ref|ZP_04141285.1| DNA primase [Bacillus thuringiensis Bt407]
 gi|229048012|ref|ZP_04193588.1| DNA primase [Bacillus cereus AH676]
 gi|229071796|ref|ZP_04205011.1| DNA primase [Bacillus cereus F65185]
 gi|229081553|ref|ZP_04214051.1| DNA primase [Bacillus cereus Rock4-2]
 gi|229111766|ref|ZP_04241314.1| DNA primase [Bacillus cereus Rock1-15]
 gi|229146878|ref|ZP_04275243.1| DNA primase [Bacillus cereus BDRD-ST24]
 gi|229192503|ref|ZP_04319466.1| DNA primase [Bacillus cereus ATCC 10876]
 gi|296504787|ref|YP_003666487.1| DNA primase [Bacillus thuringiensis BMB171]
 gi|218545781|gb|ACK98175.1| DNA primase [Bacillus cereus G9842]
 gi|228591080|gb|EEK48936.1| DNA primase [Bacillus cereus ATCC 10876]
 gi|228636706|gb|EEK93171.1| DNA primase [Bacillus cereus BDRD-ST24]
 gi|228671760|gb|EEL27056.1| DNA primase [Bacillus cereus Rock1-15]
 gi|228701758|gb|EEL54246.1| DNA primase [Bacillus cereus Rock4-2]
 gi|228711391|gb|EEL63351.1| DNA primase [Bacillus cereus F65185]
 gi|228723469|gb|EEL74838.1| DNA primase [Bacillus cereus AH676]
 gi|228778773|gb|EEM27037.1| DNA primase [Bacillus thuringiensis Bt407]
 gi|228785439|gb|EEM33449.1| DNA primase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228792393|gb|EEM39960.1| DNA primase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228818239|gb|EEM64313.1| DNA primase [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228849644|gb|EEM94478.1| DNA primase [Bacillus thuringiensis IBL 200]
 gi|228856825|gb|EEN01340.1| DNA primase [Bacillus thuringiensis IBL 4222]
 gi|296325839|gb|ADH08767.1| DNA primase [Bacillus thuringiensis BMB171]
 gi|326942075|gb|AEA17971.1| DNA primase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 598

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 158/630 (25%), Positives = 272/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL  RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSVSFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVAKPSQVVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++    +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E           Q      R      +K E
Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  ++ Q+      E     ++ L     +
Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|238756615|ref|ZP_04617910.1| DNA primase [Yersinia ruckeri ATCC 29473]
 gi|238705163|gb|EEP97585.1| DNA primase [Yersinia ruckeri ATCC 29473]
          Length = 582

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 169/598 (28%), Positives = 282/598 (47%), Gaps = 46/598 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGSTQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++  + F+  SL +   K+   YL+ RG+    I  F +G+AP    +  +   +   S
Sbjct: 119 LMDQLSAFYQQSLNSPTAKQARGYLEHRGLSEDIIRHFAIGFAPAGWDNALKRFGRDAES 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  +++  +YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RTALNDAGMLV-TNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A        R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEAQVIHPNPTR----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ + +++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRATDQVICCYDGDRAGRDAAWRALETALPYLTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ + ++ PL   L++        ++PD RA+L       I+ +  + 
Sbjct: 347 DTLVRKEGKDAFEQRMEQAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +          + +    K  +                
Sbjct: 407 LRLYLRQQLGNKLGILDDSQLDKLMPKLAENTNSYQPPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       Q +   +        L+  L +  + Q      ++
Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVNTCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +  F + L+ L                  VD       ++   ++  L++R +
Sbjct: 504 LELYRDNKFSQQLETLATWNHMIAEEMIEP--TFVDTLTSLYDSILEQRQETLIARDR 559


>gi|269794717|ref|YP_003314172.1| DNA primase [Sanguibacter keddieii DSM 10542]
 gi|269096902|gb|ACZ21338.1| DNA primase [Sanguibacter keddieii DSM 10542]
          Length = 656

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 148/675 (21%), Positives = 252/675 (37%), Gaps = 66/675 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ +  +     I  ++G+ V           G     CPFHDE++PSFH     G +
Sbjct: 5   IKREDVDAVRDKARIEEIVGEQVTLRPAG----VGSMKGLCPFHDERSPSFHVRPQVGRW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119
           +CF C+  GD +SF+  + G  F E+V+ LA   G+ L   +    ++ +    +  L+ 
Sbjct: 61  HCFGCNEGGDVISFVQKIDGLGFSEAVEYLAGRVGIQLRYEEGSGPRRTEEPGKRQRLLE 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              +A  FF   L          +L ER  D +    F +GYAP    +  +HLR KGF+
Sbjct: 121 ANRIAGAFFAEQLLTPEAATARAFLAERSFDRNDALHFGIGYAPKGWDAALKHLRGKGFT 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPE 238
           E ++  +GL+  G+     YDRFR RLI+PIR   G+ I FG R L  + +  KYLN+PE
Sbjct: 181 EAELTASGLVSQGNR--GIYDRFRGRLIWPIRDVTGETIGFGARKLYEEDQGPKYLNTPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A   + K          +  I++VEGY DV++   +GV   V++ 
Sbjct: 239 TALYKKSQVLYGIDLAKRDIAK----------NKQIVVVEGYTDVMAAHLSGVTTAVATC 288

Query: 299 GTALTEYQLRLLWK------------------LSPRIVLCFDGDDPGLRAAYKAIDLVLC 340
           GTA     +R   +                      I+  FDGD  G +AA +A      
Sbjct: 289 GTAFGPDHVRFARRLVGDTSAGGGVQLAGGGSSGGEIIFTFDGDAAGQKAAMRAFGEDQK 348

Query: 341 HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE 400
                 +    +   G DP    +  G  A + L+    PL + + K        +T + 
Sbjct: 349 FYA---QTFVAVEPSGMDPCDLRQARGPQAVQALVEGRQPLFEFVIKTTLATYDLDTAEG 405

Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
           R          +  I+D  LR  Y++ +   L    +  +      GR      +    +
Sbjct: 406 RVAALRAAAPVVAGIRDTALRPEYARMLAGWLGMDGESVLRAVQTAGRGQGNGQQRGGDR 465

Query: 461 GPSQRLMQ----------------SSLVKGKLSKKPSLREAALLLTLINHPAILQ-EQYQ 503
           G   R                       +   S   +  E   L  ++ HP  +      
Sbjct: 466 GRPSRQAPEQSGDGGARLPGADSGDGFQRPSQSDPIARLERQTLEVILQHPHHIPAAAVD 525

Query: 504 ELADIRYDNNELQKLWSFLFSD--FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
           +L    +     + +   + +             E    + E     +L  ++       
Sbjct: 526 DLPGDAFTVPAWRAVHEAIRAAGGLATAAQRQDSEWVGLITEECSPPVLALVNELAV--- 582

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
             +   E     +    Q  +  +     ++R+      ++ ++    EAE      + L
Sbjct: 583 --APLPEDRPGAIDDYVQGVVRAFVELG-ITRKIGNARSRLQRLDPVAEAEAYNQAFTDL 639

Query: 622 HEVHIQIHQIESQEA 636
             +  Q  ++  Q A
Sbjct: 640 LTLEQQRRELREQSA 654


>gi|332163000|ref|YP_004299577.1| DNA primase [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|325667230|gb|ADZ43874.1| DNA primase [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862245|emb|CBX72406.1| DNA primase [Yersinia enterocolitica W22703]
          Length = 582

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 174/598 (29%), Positives = 282/598 (47%), Gaps = 46/598 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRIFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQLERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+  SLK     +   YL  RG+    I+ F +G+AP    +  +   + G S
Sbjct: 119 LMESLSAFYQQSLKGQNANQAREYLKHRGLSDEIIQHFAIGFAPPGWDNALKRFGRDGES 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  +++   YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RTALNDAGMLV-TNDTGRVYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A           V   + + +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEA----------QVSHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T   ++LL++ +  ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ + E+ PL   L++        ++PD RA+L       I+ +  + 
Sbjct: 347 DTLVRKEGKDAFEQRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +            +    K  +                
Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQAENVNTYQPPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       Q +   +        L+  L    + Q      ++
Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVETCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +  F + L+ L     +  +     E   VD       ++   ++  L++R +
Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDMVEQTFVDTLTSLYDSILEQRQETLIARDR 559


>gi|239931425|ref|ZP_04688378.1| DNA primase [Streptomyces ghanaensis ATCC 14672]
 gi|291439798|ref|ZP_06579188.1| DNA primase [Streptomyces ghanaensis ATCC 14672]
 gi|291342693|gb|EFE69649.1| DNA primase [Streptomyces ghanaensis ATCC 14672]
          Length = 639

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 150/656 (22%), Positives = 270/656 (41%), Gaps = 42/656 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  + SKG 
Sbjct: 4   RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD L+F+  +   SF E+V+RLAA AG+ L   +       +   +  L+ 
Sbjct: 60  FHCFGCQEGGDTLTFVMKIDHLSFSEAVERLAAQAGITLRYEEGGYNPAHQRGERIRLVE 119

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             ++A +++   L  +   +    +L ERG D  A   F +GY+P     L  +LR KGF
Sbjct: 120 AHKIAAEWYAEQLETSPEAETGRVFLAERGFDQAAARHFGVGYSPQGWDHLTRYLRGKGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237
           S+++++ +GL    +      DRFR RL++PIR   G+V+ FG R L       KYLN+P
Sbjct: 180 SDKELVLSGL--SQEGRRGPIDRFRGRLMWPIRDIGGEVVGFGARKLHDADNGPKYLNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++ K + LY    A   + KS R           ++VEGY DV++   AGV   +++
Sbjct: 238 ETAIYKKSQVLYGIDLAKKEIAKSSRA----------VVVEGYTDVMACHLAGVTTAIAT 287

Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            GTA     +++L +L       R++  FDGD  G +AA +A +               +
Sbjct: 288 CGTAFGGDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP       G  A   L+    PL +   ++       +TP  RA         +
Sbjct: 345 APDGMDPCDLRLAKGDEAVADLVEPRTPLFEFALRQIVGRYDLDTPAGRAAALDEAAPVV 404

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             IK+   ++  +  +   L  L  +++ +       W +    +      Q+       
Sbjct: 405 ARIKNSGAQHEVAVQLAGMLGILDTQFVVKRVAQLARWARERGGKGPAPDRQQRGGPQQY 464

Query: 473 KGK----------LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
                        L       E  LL   +  P ++   +       +       +   +
Sbjct: 465 APAPAAPRGPALTLRNPVFATERELLKLALQRPELVSPAFDAYGVDEFTAPPYAAVRQAI 524

Query: 523 FSD-FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
                 E     P+E   R+ +    + ++ +   V +  + +      + +V + Y  A
Sbjct: 525 LDAGGAEYGVQDPQEYLIRVRDAAPDDTVRAM---VTELAVEAIMLHRGVKEVDETYAGA 581

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
             +  R R + R+  ++  ++ ++   G+  + A + + L  +      +    A 
Sbjct: 582 QLVTVRRRAVERRIRDVTSRLTRLATHGDPAELASVQNELWVLQQYDQALREHGAA 637


>gi|238789196|ref|ZP_04632984.1| DNA primase [Yersinia frederiksenii ATCC 33641]
 gi|238722728|gb|EEQ14380.1| DNA primase [Yersinia frederiksenii ATCC 33641]
          Length = 582

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 174/598 (29%), Positives = 284/598 (47%), Gaps = 46/598 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQIERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+  SLK     +   YL  RG+    I+ F +G+AP    +  +   + G S
Sbjct: 119 LMESLSAFYQQSLKGQTANQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGES 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  +++  +YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RTALNDAGMLV-TNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A           V   + + +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEA----------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T   ++LL++ +  ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ + E+ PL   L++        ++PD RA+L       I+ +  + 
Sbjct: 347 DTLVRKEGKDAFERRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +          + +    K  +                
Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQAENINSYQPPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       Q +   +        L+  L    + Q      ++
Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVETCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +  F + L+ L     +  +     E   VD       ++   ++  L++R +
Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDMVEQTFVDTLTSLYDSILEQRQETLIARDR 559


>gi|149910042|ref|ZP_01898690.1| DNA primase [Moritella sp. PE36]
 gi|149806910|gb|EDM66871.1| DNA primase [Moritella sp. PE36]
          Length = 578

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 167/628 (26%), Positives = 286/628 (45%), Gaps = 59/628 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PRDFI  L+    I +++ + V   +   N     Y ACCPFH+EK+PSF  +  K F
Sbjct: 4   RIPRDFIDGLIGRADIVDIVEKRVKLKKAGKN-----YQACCPFHNEKSPSFTVSQDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRL 120
           Y+CF C   G+ + FL       F+E+++ LA+  G+ +P  +   +      + D   L
Sbjct: 59  YHCFGCGAHGNAIGFLMEYDNLEFVEAIEDLASFYGMEVPREEGGTQGPTAPERKDYYEL 118

Query: 121 IEVATDFFHHSLKNARDKRLHY-YLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +E  T F+ + LK   +KR+   YL +RG+ +  I+ + +GYA     ++ +   +   +
Sbjct: 119 LESVTRFYQYQLKEHPNKRVVNDYLKQRGLSAEVIKKYAIGYAAPGWDNVLKRFGRDKHT 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           E++++  G+LI+ +  +  YDRFR R++FPIR  RG+VI +GGR L   E  KYLNSPET
Sbjct: 179 EDQLLTTGVLIENEGQSRRYDRFRERVMFPIRDKRGRVIGYGGRVL-GDEKPKYLNSPET 237

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKGK LY  +                     I++VEGYMDV++L Q G+   V+SLG
Sbjct: 238 PIFHKGKELYGLYEVRQA----------YKEIPQIVVVEGYMDVVALAQFGIDYAVASLG 287

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ +  Q++ L++ + +++ C+DGD  G  AA++A++  L  L  G  +NFV L  GEDP
Sbjct: 288 TSTSGDQMQTLFRNTSQVICCYDGDKAGRDAAWRALENALPQLRDGKELNFVFLPDGEDP 347

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS +R  GK A E+L  E+  L D L+ R ++N    T   R++L   +K  I  + D  
Sbjct: 348 DSLVRHQGKDALEQLFKEAQTLPDFLFSRLSQNIDTLTDAGRSKLASQVKPLIEKMPDGF 407

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    + +   L     K     +                 P+++ +Q + +       
Sbjct: 408 YRGIVLKKLARFLGWDEAKLNKLFTSIA-----------TAKPTKKAIQITPI------- 449

Query: 480 PSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                   +  L+ +P I      + +L  ++        +   L +           ++
Sbjct: 450 -----RRAIGLLLQNPHIGFNLPIFDDLPQLKLPG---INILLKLLAQTNSSDQISTAQL 501

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +   +    + L +L              +    D  +            +++ ++  E
Sbjct: 502 LEYWRDTPEQKALIKLAVW-----------DHGADDAIEAEFFDTLFVLSTQVIEQRFGE 550

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVH 625
           +  Q+          +     SIL E+ 
Sbjct: 551 L--QLKSAQGGLTKPELLEYKSILDELK 576


>gi|123443867|ref|YP_001007838.1| DNA primase [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122090828|emb|CAL13710.1| DNA primase [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 582

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 174/596 (29%), Positives = 281/596 (47%), Gaps = 42/596 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQLERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+  SLK     +   YL  RG+    I+ F +G+AP    +  +   + G S
Sbjct: 119 LMESLSAFYQQSLKGQNANQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGES 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  +++   YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RTALNDAGMLV-TNDTGRVYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A           V   + + +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEA----------QVSHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T   ++LL++ +  ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ + E+ PL   L++        ++PD RA+L       I+ +  + 
Sbjct: 347 DTLVRKEGKDAFEQRMDEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +            +    K  +                
Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQAENANTYQPPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +       L  +         L+  L    + Q      ++ +
Sbjct: 452 -----RILIGLLVQNPQLA-TLIPSLKGVEQAKLAGLPLFIELVETCLAQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
              +  F + L+ L     +  +     E   VD       ++   ++  L++R +
Sbjct: 506 LYRDNKFSQQLETLATW--NHMIVEDMVEQTFVDTLTSLYDSILEQRQETLIARDR 559


>gi|254435374|ref|ZP_05048881.1| DNA primase [Nitrosococcus oceani AFC27]
 gi|207088485|gb|EDZ65757.1| DNA primase [Nitrosococcus oceani AFC27]
          Length = 584

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 178/608 (29%), Positives = 277/608 (45%), Gaps = 45/608 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++FI +L+    I  LI   V   +        +Y ACCPFH+EKTPSF  +  K F
Sbjct: 16  RIPQEFIDELVARTDIVELIDSRVPLRKA-----SHNYVACCPFHNEKTPSFTVSPQKQF 70

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C V G  + FL A    SFIE+V+ LA  AG+ +P    K +        L  ++
Sbjct: 71  YYCFGCSVHGTAIGFLMAFDRLSFIEAVEELAQRAGMMVP-QSSKQQDYYNRHQGLYEVL 129

Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             A +F+   L+ +A   ++  YL ERG+    I  F LG+AP    +L  + R    S 
Sbjct: 130 ACAAEFYQQQLEASAYQGQVKAYLRERGLSGPIIAEFGLGFAPPRWNALLHYTRPSLKSY 189

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            +     +          YDRFR+RLIFPI   RG+VI FGGR L    S KYLNSPET 
Sbjct: 190 LQAAGLTISK---GEDRYYDRFRDRLIFPIHDYRGRVIGFGGRLL-GDGSPKYLNSPETA 245

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LY  +     L +  R          +++VEGYMDVL+L +  ++  V++LGT
Sbjct: 246 LFHKGRELYGLYQVRKSLHRCDR----------LLVVEGYMDVLALAEHKIRYAVATLGT 295

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T   L  L++++P ++ CFDGD  G +AA++A++  L  L  G +V F+ L +GEDPD
Sbjct: 296 ATTSDHLTRLFRITPAVIFCFDGDRAGYQAAWRALETALPLLSQGRQVQFMFLPQGEDPD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           + +R  G+TAFE  + E++PL D L     +  + ++ D  A L    +  +  I     
Sbjct: 356 TMVRAEGQTAFEARLAEAVPLSDFLLNNLRQKVNLSSVDGCARLVELARPLLARIPPGVY 415

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      + +  Q      I   S   +      R  +Q   S                 
Sbjct: 416 QDMLLARLAELAQIEQTTLIRHLSPGKKPTAVPLRRLEQGAASPT--------------- 460

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                  +  L+  P ++Q   + L+    +     +L   L        +     + +R
Sbjct: 461 ----RRAVAILLQRPKMIQWVDKNLSLRGLEG-AGAELLQKLVDLLQNNPHLNTAALLER 515

Query: 541 LCERGFGELLKQLD--RQVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLS-RQKE 596
             +   G  L+QL     +          +A +  ++ QG +Q +        L+  ++ 
Sbjct: 516 WRDSEMGRYLEQLAGWELLLTDEDMVLELQAALERLQVQGAEQRIITLSNQPSLTGAEQR 575

Query: 597 EIEKQIAQ 604
           E+   +A+
Sbjct: 576 ELLALLAE 583


>gi|119356438|ref|YP_911082.1| DNA primase [Chlorobium phaeobacteroides DSM 266]
 gi|119353787|gb|ABL64658.1| DNA primase [Chlorobium phaeobacteroides DSM 266]
          Length = 636

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 175/651 (26%), Positives = 274/651 (42%), Gaps = 43/651 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P++ I D+     I +LI  YV       N     Y A  PF  EKTPSF  +  K  +
Sbjct: 7   IPQNIIDDIRRSTDIVDLIADYVKLHPSGRN-----YKALSPFTQEKTPSFVVSPDKQIF 61

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CFS    G+  +F+  +   SF E+V+ LA   G+ +     + + + +        + 
Sbjct: 62  KCFSTGKGGNVYTFVMEMEKISFPEAVELLAKRTGIDISRFTKQQKIQNEENESQTGTLR 121

Query: 123 VATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A   FH++L++ +  +   YL E RG+    I+ F +GYAPD   +L    +Q      
Sbjct: 122 WAARTFHNTLESPKGVQGLSYLTEARGLSRAIIQQFGIGYAPDQWDNLINEAKQASIPLA 181

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETI 240
            + E GL        + YD FRNR+IFPI S  GQV  FGGRTL       KYLNSPE  
Sbjct: 182 NLTELGLTTHHKERGSWYDTFRNRVIFPIFSIGGQVAGFGGRTLDSDPRTPKYLNSPENP 241

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K K LY    A + +++S             +LVEGYMDVL+L QAG+   V+S GT
Sbjct: 242 LFEKSKLLYGLHAAKDEIRRS----------ESALLVEGYMDVLALHQAGITTAVASCGT 291

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT YQ ++L + + R++  +D D  G ++    ID     +  G     + L  G+DPD
Sbjct: 292 SLTRYQAKILQRYTNRVLFVYDADPAGKKSMMAGID---TLVTEGITPFVLELPSGDDPD 348

Query: 361 SFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           SF++  GK  F +   ++    +D   +  T++ +F   D +A+    + + I  I D+ 
Sbjct: 349 SFVQRAGKEEFLRYSEKNKQSFIDFQIRFFTQSGNFAQTDVKAKAIRAITHTIALIPDRI 408

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y Q + ++L   F                 +  R +K         +       KK
Sbjct: 409 RQELYLQELSEKLGISFSSLKELLVIE-------STMRREKNIPGENSMRARPTPVPEKK 461

Query: 480 PSLREAALLLTLINH----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-----QK 530
            S+ E   L  L+       A+L+        +   N   Q +++ L   +         
Sbjct: 462 MSVLERTFLKALLESSFYGNAVLEFAASHENMLTLPNPLAQNIFTHLIRRYHSLSGSPND 521

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--F 588
           +           E     L   L      +  W   T+ N  + RQ     L  +K    
Sbjct: 522 HLDIISEISMFSEPEARNLASGLLLDQPVSKKWHEQTDLNAENARQCLASFLDAFKSLVL 581

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAMI 638
             L RQKE + +QI     + +A     L+     +  +I +  +   AMI
Sbjct: 582 EPLIRQKEILTEQIR---NENDAALETELLREKITLDRKIRKTSDDLRAMI 629


>gi|228923045|ref|ZP_04086338.1| DNA primase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836678|gb|EEM82026.1| DNA primase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 598

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 158/630 (25%), Positives = 272/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL  RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATIKAGQL---LLKVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSVSFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVAKPSQVVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++    +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E           Q      R      +K E
Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  ++ Q+      E     ++ L     +
Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|261492896|ref|ZP_05989442.1| DNA primase [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496754|ref|ZP_05993129.1| DNA primase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307593|gb|EEY08921.1| DNA primase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311437|gb|EEY12594.1| DNA primase [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 582

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 173/604 (28%), Positives = 284/604 (47%), Gaps = 49/604 (8%)

Query: 1   MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M    PR FI DL+    I  +I   V   +        DY ACCPFH EK+PSF  + S
Sbjct: 1   MKGTIPRSFIDDLIARTDIVEVINSRVKLKKAGR-----DYQACCPFHHEKSPSFSVSQS 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKI 113
           K FY+CF C V G+ ++FL       F E+++ LAA+ G+ +P       D K +   K 
Sbjct: 56  KQFYHCFGCGVHGNVITFLMDYDKLEFPEAIEELAAMHGLEVPRENVIQRDGKPQANFKT 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + +L  L+E    F+  +L  +       YL +RG+    IE F++G+AP++  +     
Sbjct: 116 KRNLYELMEAVAKFYQQNL--SHQIEPQSYLQQRGLSPEIIERFEIGFAPNAFDAALRTF 173

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VK 232
            Q     +K+++ G+L   D+    YD+FRNR++FPIR  RG+VIAFGGR L   E   K
Sbjct: 174 GQSQEDIQKLLDTGVLTKNDSG-RIYDKFRNRVMFPIRDKRGRVIAFGGRVLPNDEQGAK 232

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           Y+NSPET+++HKG  LY  + AL              +  ++ +VEGYMDV++L Q GV 
Sbjct: 233 YMNSPETVIYHKGSELYGLYQALK----------VNETPDYLFVVEGYMDVVALAQFGVD 282

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           N V+SLGTA T  Q++ +++ + +IV C+DGD  G  AA++A++  L +L  G ++ F+ 
Sbjct: 283 NAVASLGTATTGEQIQQMFRCTEQIVCCYDGDRAGRDAAWRALENALPYLQDGRQLKFIF 342

Query: 353 LSRGEDPDSFIRCYGKTAFEKLI-VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           L  GEDPD+F+R  GK  FE+ +   + PL D L+     +   ++ + +++L       
Sbjct: 343 LPDGEDPDTFVRSQGKEGFEQYVAQNAKPLNDFLFDSLLADVDLSSKEGKSKLAALAVPL 402

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           IN I  + LR Y    +  +L  L    I       +  +K      +   +        
Sbjct: 403 INRIPGEMLRVYLRNILGQKLGILDPTQIEALLPTKKAAEKPLHQAVKMKRTPM------ 456

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          L+  LI +P +++      A     +     L + + +   +   
Sbjct: 457 -------------RLLIALLIQNPYLVKFVPDVSALASLKDPGF-TLLTDIVATCQQNAG 502

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                + +   E    ++++ L     D        E   +D        L   ++  L+
Sbjct: 503 ISMGGLLEHYREDPQYKIVEALANW--DHLELPENIERTFIDTLDFLYAKLVELRKEELI 560

Query: 592 SRQK 595
           ++ +
Sbjct: 561 AKDR 564


>gi|296116668|ref|ZP_06835278.1| DNA primase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976880|gb|EFG83648.1| DNA primase [Gluconacetobacter hansenii ATCC 23769]
          Length = 624

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 172/631 (27%), Positives = 269/631 (42%), Gaps = 25/631 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ +L    PI+++IG+     R   N     + ACCPFH EKTPSF+  D   
Sbjct: 1   MAFDPAFLDELRARTPITSVIGRRTKLVRSGRN-----WKACCPFHGEKTPSFYVYDDH- 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++CF C V GD +SF+    G SF E+V+ LA  AG+ +P +D    + ++    L  +
Sbjct: 55  -FHCFGCGVHGDVISFVMQSEGRSFPEAVEELATAAGLEMPRMDRTQREAQREARTLGDV 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E     +   L     +    YL  RG+    I  F LG++ D R  L   L  +  + 
Sbjct: 114 LEAVQQAWRLRLHRNEGREGLAYLRGRGLTDETIAAFGLGWSGDGRGGLVAELAAQDITA 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             + +AGL+   ++     + F NR+ FPI   RG++++FGGR L      KYLN PET 
Sbjct: 174 PLLAQAGLMRVDEHGQPKGELFFNRVTFPIHDRRGRLVSFGGRIL-GDGQPKYLNGPETA 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + L+          ++ R       +  +++VEGYMDV++L QAG    V+ LGT
Sbjct: 233 IFSKRRVLFGLDR-ARAAVRAPRGGGHAAPAPELLVVEGYMDVIALHQAGFTGAVAPLGT 291

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q+  LW++S   VLCFDGD  G RAA KA +  L  L     + F  L  GEDPD
Sbjct: 292 ALTPEQMEALWQVSSAPVLCFDGDAAGQRAAVKAAETALPLLNVERTLRFCTLPEGEDPD 351

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S +R  G  A   L+  + PL ++L+   +E      P++RA L   L      I D+ L
Sbjct: 352 SLLRQRGTAAMAALVEGARPLSEVLFGLLSEGTRDPGPEQRAALRQRLVEAAGLIPDKSL 411

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y   + DR    F++                +       S   +             
Sbjct: 412 ASEYRSTLLDRFFATFRR-----RPAMSGRGGRGQGAAPAARSLAGVLPVAPDLDAQSVA 466

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ-KYFLPEEIHQ 539
             R   L   L+ HP +L+E       +     EL  L + +     +         + +
Sbjct: 467 MERMRILTAILLRHPEVLEEVQDAYCRLDMP-PELSALRAVMLDMLADGDGNADASALLE 525

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIV----DVRQGYQQALALYKRFRLLSRQK 595
            L  R     L  +  +V  +     + +        D+RQ +    AL      + R  
Sbjct: 526 ALGARIGEANLSDMRERVLSSHPLPLSAQERDDLMVMDIRQEWWHFYALL----NVERFA 581

Query: 596 EEIEKQIAQVTAKGEAEKTAILIS-ILHEVH 625
            +I     +++     E+    +   L  + 
Sbjct: 582 ADIRLDTERMSTGPIDERQWESLRVRLLTLE 612


>gi|302551233|ref|ZP_07303575.1| DNA primase [Streptomyces viridochromogenes DSM 40736]
 gi|302468851|gb|EFL31944.1| DNA primase [Streptomyces viridochromogenes DSM 40736]
          Length = 638

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 147/655 (22%), Positives = 267/655 (40%), Gaps = 41/655 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  + SKG 
Sbjct: 4   RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD L+F+  +   SF E+V+RLA  AG+ L   +       +   +  L+ 
Sbjct: 60  FHCFGCQEGGDTLTFVMKIDHLSFSEAVERLAGQAGITLRYEEGGYNPSHQRGERIRLVE 119

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             ++A +++   L  +        +L ERG D  A   F +GY+P     L  +LR KGF
Sbjct: 120 AHKIAAEWYAEQLAMSPEADTGRVFLAERGFDQAAAVHFGVGYSPQGWDHLTRYLRGKGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237
           ++++++ +GL    +      DRFR RL++PIR   G V+ FG R L +     KYLN+P
Sbjct: 180 TDKELLLSGL--SQEGRRGPIDRFRGRLMWPIRDIGGDVVGFGARKLYEADNGPKYLNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T ++ K + LY    A   + K+ R           ++VEGY DV++   AGV   +++
Sbjct: 238 DTAIYKKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIAT 287

Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            GTA     +++L +L       R++  FDGD  G +AA +A +               +
Sbjct: 288 CGTAFGGEHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP       G  A   L+    PL +   ++       +TP  RA         +
Sbjct: 345 APDGMDPCDLRLAKGDEAVADLVEPRTPLFEFALRQIVGRYDLDTPAGRAAALDEAAPVV 404

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP---------S 463
             IK+   ++  +  +   L  L  +++ +       W +    +              +
Sbjct: 405 ARIKNSGAQHEVAVQLAGMLGILDTQFVVKRVAQLARWARERGGKGPAPDRHQHAAQQYA 464

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           Q           L       E  LL   +  P ++   +       +       +   + 
Sbjct: 465 QPSAAPRGPALNLRNPVYATERELLKLALQRPELVSPAFDAYGIDEFTAPPYAAVRQAIL 524

Query: 524 SDFVEQKYF-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +     P+    ++ E    + ++ +   V +  + +         V + Y  A 
Sbjct: 525 DAGGSEPGVEDPQGYLVKVREAAPDDAVRAM---VTELAVEAILLHKGTKGVDEVYAGAQ 581

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            +  R R + R+  +I+ Q+ ++   G+  + A + + L  +      +  Q A 
Sbjct: 582 LVTVRRRAVERRIRDIQSQLTRLGTHGDPAQLAAVQNELWVLQQYDQTLRVQGAA 636


>gi|213417804|ref|ZP_03350914.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 573

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 171/626 (27%), Positives = 291/626 (46%), Gaps = 58/626 (9%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
           FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K FY+CF 
Sbjct: 1   FINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQFYHCFG 55

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVA 124
           C   G+ + FL       F+E+V+ LAA+  + +P        + +   + +L +L+   
Sbjct: 56  CGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQLMNGL 115

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
            DF+  SL +   K    YL +RG+ +  I+ F +G+AP    +  +       ++  ++
Sbjct: 116 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 175

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
           +AG+L+  +   ++YDRFRNR++FPIR  RG+VI FGGR L   ++ KYLNSPET +FHK
Sbjct: 176 DAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPETDIFHK 233

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
           G+ LY  + A  Y  +  R          +++VEGYMDV++L Q  +   V+SLGT+ T 
Sbjct: 234 GRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLGTSTTA 283

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             + +L++ +  ++ C+DGD  G  AA++A++  + ++  G +V F+ L  GEDPD+ +R
Sbjct: 284 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 343

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + ++ PL   L+         ++PD   +L       IN +     R   
Sbjct: 344 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDTHRIQL 403

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            Q +  +L       +                     P+ +L ++++             
Sbjct: 404 RQTLGLKLGIFDDSQLDRLV-------PKQAESGVSRPAPQLKRTTM------------- 443

Query: 485 AALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
             L+  L+ +P +         L   +     L  L+  L    + Q      ++ +   
Sbjct: 444 RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQLLELYR 500

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                  L++L        +W    +  I    + +  +L  +    LL  ++EE+   I
Sbjct: 501 GTNDAATLEKL-------SMWDDIADKAI--AEKTFTDSLN-HMFDSLLQLRQEEL---I 547

Query: 603 AQVTAKG-EAEKTAILISILHEVHIQ 627
           A+    G  +E+   L ++  E+  +
Sbjct: 548 ARDRTHGLSSEERRELWTLNQELARK 573


>gi|302534291|ref|ZP_07286633.1| DNA primase [Streptomyces sp. C]
 gi|302443186|gb|EFL15002.1| DNA primase [Streptomyces sp. C]
          Length = 633

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 153/654 (23%), Positives = 274/654 (41%), Gaps = 46/654 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  + SKGF
Sbjct: 4   RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118
           Y+CF C   GD L F+  +   SF E+V+RLA  AG+ L   +            +  L+
Sbjct: 60  YHCFGCQAGGDTLDFIMKIDHLSFSEAVERLAGQAGITLRYEEGGYTAGTSGRGERIRLV 119

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              + A  F+   L  A  +    +L ERG D  A + F +GY+P     L   LR KGF
Sbjct: 120 EAHKAAALFYAEQLGGAEAEIARRFLAERGFDQAAAQHFGVGYSPAGWDHLTRFLRGKGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           +++++I +GL  D  +     DRFR RL++PIR   G+V+ FG R L + ++  KYLN+P
Sbjct: 180 TDKELILSGLAQDSRSG-KPIDRFRGRLMWPIRDISGEVVGFGARKLREDDNGPKYLNTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++ K + LY    A   + K+ R           ++VEGY DV++   AGV   +++
Sbjct: 239 ETAIYKKSQVLYGIDLAKKEIAKTSRA----------VVVEGYTDVMACHLAGVTTAIAT 288

Query: 298 LGTALTEYQLRLLW-----KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            GTA     +++L        +  ++  FDGD  G +AA +A +            +  +
Sbjct: 289 CGTAFGGDHIKILRRLLMDNATAEVIFTFDGDAAGQKAALRAFEDDQKFAA---ETSITI 345

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP       G  A   L+    PL +   +      +   P  RA         +
Sbjct: 346 APGGMDPCDLRLAQGDAAVAGLVDARTPLFEFALRHIVSRHNLENPAGRAAALAEAAPVV 405

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL- 471
             IKD  +++  +  +   L  L ++++ +       W +   ++ Q+    R  + +  
Sbjct: 406 ASIKDLSIQHESAVQLAGMLGILDEQFVVKRVAQLARWARERGNQPQQQGRGRPQEPAPA 465

Query: 472 ---------VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
                        L       E  LL   +  PA++   +       +       +   +
Sbjct: 466 PPPASVGGGPALNLRSPAHRTERELLKLALQRPALVSPAFDAYGIDEFTAPPYAAVRQAI 525

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                  +    E+   R+ E    + ++ +  ++    + + T +       + Y    
Sbjct: 526 QDAGGAAQA--TEDYVARVREAAPNDTVRAMVTELAVEAIHAKTVD-------EVYAGVQ 576

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +  R R + R+  EI+  + +++ +   E+ A +   L  +     ++ ++ A
Sbjct: 577 LVQVRLRAVDRRVLEIQGALTRLSPQAPPEQHAAVQQELWVLQQYGQRLRNRGA 630


>gi|227113749|ref|ZP_03827405.1| DNA primase [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 584

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 170/608 (27%), Positives = 281/608 (46%), Gaps = 49/608 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+++ LA   G+ +P        + +   +  L  
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVETIEELATQYGLEVPYETGTGPTQLERHQRQSLYE 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+   + F+  +L  +       YL +RG+ +  I  F +G+AP    ++ +   +    
Sbjct: 119 LMGQLSGFYQQALSQSVGTPALQYLQQRGLSAEVISHFAIGFAPPGWDNVLKRFGRNNDD 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  ++   +YDRFR R++FPIR  RG+VIAFGGR L    + KYLNSPET
Sbjct: 179 RSTLNDAGMLV-TNDQGRTYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEAQQNHPELKR----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATDLVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ + ++LPL   L++   +    ++PD R +L       I  +  + 
Sbjct: 347 DTLVRQEGKVAFEQRMEQALPLSQFLFETLQQQVDMSSPDGRTKLSTLALPLIGQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +           ++ +    K  +                
Sbjct: 407 LRLYLRQQLGNKLGILDDSQLDRLLPKVAEQAQSYQPPQLKVTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                  L+  L+ +P +  E     L  I  D      L+  L              + 
Sbjct: 452 -----RILIGLLVQNPRLATEVPDLALEGIEEDKVAGLSLFQDLVKTCNASPGMNMGLLL 506

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-------LYKRFRLL 591
           ++  +  + + L+ +        +     E   + + + Y Q L           R   L
Sbjct: 507 EKYRDSKYRKQLETMASW-NHMIVEEELDEKFRISLAELYDQLLKQRQETLIARDRTHGL 565

Query: 592 S-RQKEEI 598
           + ++K+E+
Sbjct: 566 NAKEKKEL 573


>gi|116669899|ref|YP_830832.1| DNA primase [Arthrobacter sp. FB24]
 gi|116610008|gb|ABK02732.1| DNA primase [Arthrobacter sp. FB24]
          Length = 628

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 145/648 (22%), Positives = 255/648 (39%), Gaps = 43/648 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ I ++     I  ++  YV           G +   CPFHDE++PSF      G Y
Sbjct: 5   IKREDIDEVRQRTDIKEVVDGYVTLKGAG----LGSFKGLCPFHDERSPSFTVRPQVGRY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119
           +CF C   GD +SF+  L   SF E+V++LAA  G  L   D       +    +  L+ 
Sbjct: 61  HCFGCGEDGDVISFVQKLDHSSFHEAVEKLAARIGFELRYEDGGTGPSREDVGKRQRLLD 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             +VA +FF   L          +L  RG D  A E F +GYAP    +L +HLR +G++
Sbjct: 121 AHKVADEFFRAQLLTPGASEGRNFLHGRGFDRTAAEQFGVGYAPQGWDALLKHLRGRGYT 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           + ++   G+  +G+     YDRFR RLI+PIR   G  I FG R L + +   KYLN+PE
Sbjct: 181 DAELKLTGMFSEGNR--GIYDRFRGRLIWPIRDIAGDTIGFGARKLYEDDQGPKYLNTPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A   + K             +++VEGY DV++   +G+   V++ 
Sbjct: 239 TTLYKKSQVLYGIDLAKRNIAK----------ERQLVVVEGYTDVMACHLSGITTAVATC 288

Query: 299 GTALTEYQLRLLWK------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           GTA     +++  +          ++  FDGD  G +AA +A +     +    +    +
Sbjct: 289 GTAFGADHIKIARRLLSDDGTGGEVIFTFDGDAAGQKAALRAFEEDQRFVA---QTYVAV 345

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP    +  G +A   LI    PL +   +   +  + +T + R          +
Sbjct: 346 EPTGADPCDLRQARGDSAVRDLISSRRPLFEFAIRASLKRHNLDTVEGRIAALRESAPVV 405

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP------SQRL 466
             I+D  +R  Y++ +   L    ++     +   +   +                    
Sbjct: 406 AQIRDAGIRPGYARELAGWLGMPVEEVSRAVAVAAKRAAQGDTPAGSGAAPGIAELPASG 465

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFSD 525
           +  S  +       +  E   L   +  PA +    +   +   +     Q +   +   
Sbjct: 466 VVPSFNRPDPRDPVASMERQALEVALQEPAMLAGGTWDRFSAAGFRTPAYQAVHDAM--- 522

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
                    + +  R  E+   E+ + L   V +  +           +R  Y + +   
Sbjct: 523 RASGPGLTGDPV--RWVEQVMNEVPEPLRPLVSELAVVPLPASNAEGVLR--YCRDILAR 578

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                ++R K +   Q+ ++ A    E+   L   L  + ++   + S
Sbjct: 579 LFELQITRVKADKMGQLQRLDASSHPEEFQRLNRELMLLEMERRSLRS 626


>gi|77163591|ref|YP_342116.1| DNA primase [Nitrosococcus oceani ATCC 19707]
 gi|76881905|gb|ABA56586.1| DNA primase [Nitrosococcus oceani ATCC 19707]
          Length = 574

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 178/608 (29%), Positives = 277/608 (45%), Gaps = 45/608 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++FI +L+    I  LI   V   +        +Y ACCPFH+EKTPSF  +  K F
Sbjct: 6   RIPQEFIDELVARTDIVELIDSRVPLRKA-----SHNYVACCPFHNEKTPSFTVSPQKQF 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C V G  + FL A    SFIE+V+ LA  AG+ +P    K +        L  ++
Sbjct: 61  YYCFGCSVHGTAIGFLMAFDRLSFIEAVEELAQRAGMMVP-QSSKQQDYYNRHQGLYEVL 119

Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             A +F+   L+ +A   ++  YL ERG+    I  F LG+AP    +L  + R    S 
Sbjct: 120 ACAAEFYQQQLEASAYQGQVKAYLRERGLSGPIIAEFGLGFAPPRWNALLHYTRPSLKSY 179

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            +     +          YDRFR+RLIFPI   RG+VI FGGR L    S KYLNSPET 
Sbjct: 180 LQAAGLTISK---GEDRYYDRFRDRLIFPIHDYRGRVIGFGGRLL-GDGSPKYLNSPETA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LY  +     L +  R          +++VEGYMDVL+L +  ++  V++LGT
Sbjct: 236 LFHKGRELYGLYQVRKSLHRCDR----------LLVVEGYMDVLALAEHKIRYAVATLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T   L  L++++P ++ CFDGD  G +AA++A++  L  L  G +V F+ L +GEDPD
Sbjct: 286 ATTSDHLTRLFRITPAVIFCFDGDRAGYQAAWRALETALPLLSQGRQVQFMFLPQGEDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           + +R  G+TAFE  + E++PL D L     +  + ++ D  A L    +  +  I     
Sbjct: 346 TMVRAEGQTAFEARLAEAVPLSDFLLNNLRQKVNLSSVDGCARLVELARPLLARIPPGVY 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      + +  Q      I   S   +      R  +Q   S                 
Sbjct: 406 QDMLLARLAELAQIEQTTLIRHLSPGKKPTAVPLRRLEQGAASPT--------------- 450

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                  +  L+  P ++Q   + L+    +     +L   L        +     + +R
Sbjct: 451 ----RRAVAILLQRPKMIQWVDKNLSLRGLEG-AGAELLQKLVDLLQNNPHLNTAALLER 505

Query: 541 LCERGFGELLKQLD--RQVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLS-RQKE 596
             +   G  L+QL     +          +A +  ++ QG +Q +        L+  ++ 
Sbjct: 506 WRDSEMGRYLEQLAGWELLLTDEDMVLELQAALERLQVQGAEQRIITLSNQPSLTGAEQR 565

Query: 597 EIEKQIAQ 604
           E+   +A+
Sbjct: 566 ELLALLAE 573


>gi|229019518|ref|ZP_04176335.1| DNA primase [Bacillus cereus AH1273]
 gi|228741774|gb|EEL91957.1| DNA primase [Bacillus cereus AH1273]
          Length = 598

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 163/630 (25%), Positives = 277/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQENISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL +RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           FS   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 FSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  Y++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPYIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTPLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVSKPSQIVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++    +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMEPHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +          S     N     +  Q  L   KR      +K E
Sbjct: 519 LSWLSDEKLKNIITDI----------STDEFINPEYTEEVLQGHLETLKR-HQEKLEKME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  ++ Q+      E     ++ L     +
Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|42783420|ref|NP_980667.1| DNA primase [Bacillus cereus ATCC 10987]
 gi|42739349|gb|AAS43275.1| DNA primase [Bacillus cereus ATCC 10987]
          Length = 571

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 157/596 (26%), Positives = 270/596 (45%), Gaps = 32/596 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL +RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINHLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q         
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQ----AKPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++  P +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              L +     ++  +     D  +    TE  +    +  ++     KR++  SR
Sbjct: 519 LSWLSDEKLKNIITDI---STDEFINPEYTEEVLQGHLETLRRHQEKLKRWKSSSR 571


>gi|300112779|ref|YP_003759354.1| DNA primase [Nitrosococcus watsonii C-113]
 gi|299538716|gb|ADJ27033.1| DNA primase [Nitrosococcus watsonii C-113]
          Length = 575

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 176/608 (28%), Positives = 279/608 (45%), Gaps = 44/608 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++FI +L+    I  LI   V   +        ++ ACCPFH+EKTPSF  +  K F
Sbjct: 6   RIPQEFIDELVARTDIVELIDSRVPLRKA-----SHNHVACCPFHNEKTPSFTVSPQKQF 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C V G  + FL A    SFIE+V+ LA  AG+ +P    K +        L  ++
Sbjct: 61  YYCFGCGVHGTAIGFLMAFDRLSFIEAVEELAQRAGMIVP-QSSKQQDYYNRHQGLYEVL 119

Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             A +F+   L+ NA   ++  YL ERG+    I  F LG+AP    +L  + +    S 
Sbjct: 120 ACAAEFYQQQLEANAYQGQVKAYLRERGLSGSVIAEFGLGFAPPRWNALLHYTQPSLKSH 179

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            +     +          YDRFR+RLIFPI   RG+VI FGGR L  G   KYLNSPET 
Sbjct: 180 LQAAGLAISK---GENRYYDRFRDRLIFPIHDYRGRVIGFGGRLLGNGSP-KYLNSPETP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LY  +     L++  R          +++VEGYMDVL+L +  ++  V++LGT
Sbjct: 236 LFHKGRELYGLYQVRKSLRRCDR----------LLVVEGYMDVLALAEHKIRYAVATLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T   L  L++++P ++ CFDGD  G +AA++A++  L  L  G +V F+ L +GEDPD
Sbjct: 286 ATTSDHLTRLFRITPAVIFCFDGDRAGYQAAWRALETALPLLGQGRQVQFMFLPQGEDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           + +R  G+ AFE  I +++PL D L     +    ++ D RA L    +  +  I     
Sbjct: 346 TVVRAEGQMAFEARITKAMPLSDFLLNNLRQKVDLSSVDGRARLVELAQPLLARIPPGVY 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      + +  Q      I       +        R ++G +                 
Sbjct: 406 QDMLLAHLAELAQLEQATLIRHLRPGKKPMAVPPLQRLERGAASPT-------------- 451

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                  +  L+  P ++Q   + L+    +     +L   L +      Y     + +R
Sbjct: 452 ----RRAVAILLQRPKMIQWVDKNLSLRELEG-AGVELLQKLINLLRNNPYLNTAALLER 506

Query: 541 LCERGFGELLKQLD--RQVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLS-RQKE 596
             +   G  L+QL     +          +A +  ++ QG +Q + +      L+  ++ 
Sbjct: 507 WRDSEMGRYLEQLAGWELLLTDEDMVLELQAALERLQVQGAEQRIIILSNQSSLTGAEQR 566

Query: 597 EIEKQIAQ 604
           E+   +A+
Sbjct: 567 ELLALLAE 574


>gi|253686950|ref|YP_003016140.1| DNA primase [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251753528|gb|ACT11604.1| DNA primase [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 584

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 170/608 (27%), Positives = 279/608 (45%), Gaps = 49/608 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+++ LA   G+ +P        + +   +  L  
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVETIEELATQYGLEVPYESGTGPTQLERHQRQSLYE 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+   + F+  +L  +       YL +RG+ +  I  F +G+AP    ++ +   +    
Sbjct: 119 LMGQLSGFYQQALSQSVGTPALQYLQQRGLSAEVISHFAIGFAPPGWDNVLKRFGRNNDD 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  ++   +YDRFR R++FPIR  RG+VIAFGGR L    + KYLNSPET
Sbjct: 179 RSTLNDAGMLV-TNDQGRTYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEAQQSHAELKR----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATDLVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK  FE+ + ++LPL   L++   +    ++PD R +L       I  +  + 
Sbjct: 347 DTLVRKEGKAVFEQRMEQALPLSQFLFETLQQQVDMSSPDGRTKLSTLALPLIGQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +           +  +    K  +                
Sbjct: 407 LRLYLRQQLGNKLGILDDSQLDRLLPKVAEQAQPYQPPQLKVTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                  L+  L+ +P +  E     L  I  D      L+  L              + 
Sbjct: 452 -----RILIGLLVQNPRLAAEVPDLALEGIEEDKVAGLSLFQDLVKTCNASPGMNMGLLL 506

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-------LYKRFRLL 591
           ++  +  + + L+ +        +     E   + + + Y Q L           R   L
Sbjct: 507 EKYRDSKYRKQLETMASW-NHMIVEEELDEKFRISLAELYDQLLKQRQETLIARDRTHGL 565

Query: 592 S-RQKEEI 598
           S ++K+E+
Sbjct: 566 SAKEKKEL 573


>gi|229490245|ref|ZP_04384087.1| DNA primase [Rhodococcus erythropolis SK121]
 gi|229322777|gb|EEN88556.1| DNA primase [Rhodococcus erythropolis SK121]
          Length = 639

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 139/651 (21%), Positives = 244/651 (37%), Gaps = 40/651 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I +++G+YV   R             CPFHDEK+PSFH   + G 
Sbjct: 4   RISDRDIAAIRERTRIEDIVGEYVSLKRAG----GDSIKGLCPFHDEKSPSFHVRPNHGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   GD  SFL  +   SF+E+V++LA      +      P +++    +  LI 
Sbjct: 60  YHCFGCGEGGDVYSFLQKMDHISFVEAVEQLADRLSYTISYEGGGPSVQRDRGTRARLIA 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A +F+   L+    +    YL ER  D  A   F  GYAP+   +L +HL  KGF 
Sbjct: 120 ANAAAQEFYAARLREPDAQAARDYLTERNFDGAAALQFGCGYAPEGWDTLTKHLMSKGFE 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            +++  AGL  +        DRF  RL++PIRS  G VI FG R L   +++  KY+N+P
Sbjct: 180 FKELEAAGLSKE--GRRGPIDRFHRRLLWPIRSVAGDVIGFGARKLFDDDTMPGKYVNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ETIL+ K + L+    A   + K              ++VEGY DV+++  AGV+  V+S
Sbjct: 238 ETILYKKSQVLFGLDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVKTAVAS 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV----NFVLL 353
            GTA  E  L +L +L                         +       ++       + 
Sbjct: 288 CGTAFGEEHLAMLRRLLMDDSYFRGEIIYTFDGDAAGQAAAMKAFEGDQKMAGQTFVAVA 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  A   L+    P+ + + K         T + R E        + 
Sbjct: 348 PDGMDPCDLRLKSGDAAVRDLVARRTPMFEFVVKSILTEHDLETAEGRVEALRRTVPVVA 407

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS--- 470
            IK+  LR  Y+  +   +       +          + + R        ++++++    
Sbjct: 408 QIKESTLRDSYANLLCGWVGWDDLPSVRRRVRDEARKRASTRGSSPAPKRRQVVEAPAAD 467

Query: 471 -------LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                  + + + +      + A+L   + HP I    +  L    + +     +   + 
Sbjct: 468 ALALPIGISRPRPNDPALSTQRAVLKAALQHPGIAGSVFDSLPPETFTHPAYVVIRQAMA 527

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                 K     E  + + +      +  +  ++    +          D    Y   + 
Sbjct: 528 DAGGTSKGLGGAEWIEVVTKGVEDMTVASVVSELAVEPMPC------DEDTVPRYINGVL 581

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              +   +  Q  +++ ++ +V+     E+   L   L  +     Q+  Q
Sbjct: 582 ARLQEAWVGEQVADLKSKLQRVSPAAAPEEYNSLFGDLVALEQYRRQLREQ 632


>gi|254382901|ref|ZP_04998257.1| DNA primase [Streptomyces sp. Mg1]
 gi|194341802|gb|EDX22768.1| DNA primase [Streptomyces sp. Mg1]
          Length = 635

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 151/661 (22%), Positives = 262/661 (39%), Gaps = 58/661 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D +K +   +PI  ++  Y+       NA  G+    CPFHDEK+PSF  +  KG 
Sbjct: 4   RINDDDVKAVRDAVPIDAVVSDYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPGKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118
           Y+CF C   GD L F+  +   SF E+V+RLA  AG+ L   +            +  L+
Sbjct: 60  YHCFGCQAGGDTLDFIMKIDHLSFSEAVERLAGQAGITLRYEEGGYTAGTSGRGERIRLV 119

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              + A  F+   L  A  +    +L ERG D  A E F +GY+P     L   LR KGF
Sbjct: 120 EAHKAAAQFYVDQLGGAEAEIGRKFLAERGFDQAAAEHFSVGYSPAGWDHLTRFLRGKGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           +++++I +GL  D  +     DRFR RL++PIR   G+V+ FG R L   ++  KYLN+P
Sbjct: 180 TDKELITSGLAQDSRSG-KPIDRFRGRLMWPIRDISGEVVGFGARKLRDDDNGPKYLNTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++ K + LY    A   + K+ R           ++VEGY DV++   AGV   +++
Sbjct: 239 ETAIYKKSQVLYGIDLAKKEIAKTSRA----------VVVEGYTDVMACHMAGVTTAIAT 288

Query: 298 LGTALTEYQLRLLW-----KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            GTA     +++L        +  ++  FDGD  G +AA +A +            +  +
Sbjct: 289 CGTAFGGDHIKILRRLLMDNATAEVIFTFDGDAAGQKAALRAFEDDQKFAA---ETSITI 345

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP       G  A   L+    PL +   +      +   P  RA         +
Sbjct: 346 APGGMDPCDLRLAQGDAAVSGLVEARTPLFEFALRHIVARHNLENPAGRAAALDEAAPVV 405

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
            +IK+  +++  +  +   L    ++++ +       W +    +       R       
Sbjct: 406 ANIKNIAIQHESAVQLAGMLGIRDEQFVVKRVAQLARWARERGGQQPPPSRGRASSGYEG 465

Query: 473 KG------------KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                          L       E  LL   +  PA++   +       +       +  
Sbjct: 466 AAQAPAAPAGGPALNLRSPAHRTERELLKLALQRPALVSPAFDAYGMDEFTAPPYAAVRQ 525

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD-----VR 575
            +                     +G  + L ++     +  + +  TE  +       V 
Sbjct: 526 AILDAGGA--------------SQGTDDYLARVRAAAPNDTVRALVTELAVEAIHAKTVD 571

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           + Y     +  R R + R+  EI+  ++++     AE+ A +   L  +     ++ ++ 
Sbjct: 572 EIYAGVQLVQVRLRAVDRRVHEIQGTMSRLGPHAPAEQLAAVQEELWVLQQYGQRLRNRG 631

Query: 636 A 636
           A
Sbjct: 632 A 632


>gi|254362695|ref|ZP_04978781.1| DNA primase [Mannheimia haemolytica PHL213]
 gi|153094316|gb|EDN75177.1| DNA primase [Mannheimia haemolytica PHL213]
          Length = 582

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 173/604 (28%), Positives = 282/604 (46%), Gaps = 49/604 (8%)

Query: 1   MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M    PR FI DL+    I  +I   V   +        DY ACCPFH EKTPSF  + S
Sbjct: 1   MKGTIPRSFIDDLIARTDIVEVINSRVKLKKAGR-----DYQACCPFHHEKTPSFSVSQS 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKI 113
           K FY+CF C V G+ ++FL       F E+++ LAA+ G+ +P       D K +   K 
Sbjct: 56  KQFYHCFGCGVHGNVITFLMDYDKLEFPEAIEELAAMHGLEVPRENVIQRDGKPQANFKT 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + +L  L+E    F+  +L  +       YL +RG+    IE F++G+AP++  +     
Sbjct: 116 KRNLYELMEAVAKFYQQNL--SHQIEPQSYLQQRGLSEEIIERFEIGFAPNAFDAALRTF 173

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VK 232
            Q     +K+++ G+L   D+    YD+FRNR++ PIR  RG+VIAFGGR L   E   K
Sbjct: 174 GQSQEDIQKLLDTGVLTKNDSG-RIYDKFRNRVMLPIRDKRGRVIAFGGRVLPNDEQGAK 232

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           Y+NSPET+++HKG  LY  + AL              +  ++ +VEGYMDV++L Q GV 
Sbjct: 233 YMNSPETVIYHKGSELYGLYQALK----------VNETPDYLFVVEGYMDVVALAQFGVD 282

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           N V+SLGTA T  Q++ +++ + +IV C+DGD  G  AA++A++  L +L  G ++ F+ 
Sbjct: 283 NAVASLGTATTGEQIQQMFRCTEQIVCCYDGDRAGRDAAWRALENALPYLQDGRQLKFIF 342

Query: 353 LSRGEDPDSFIRCYGKTAFEKLI-VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           L  GEDPD+F+R  GK  FE+ +   + PL D L+     +   ++ + +++L       
Sbjct: 343 LPDGEDPDTFVRSQGKEGFEQYVAQNAKPLSDFLFDSLLADVDLSSKEGKSKLAALAVPL 402

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           IN I  + LR Y    +  +L  L    I       +  +K      +   +        
Sbjct: 403 INRIPGEMLRVYLRNILGQKLGILDPTQIEALLPTKKAAEKPLHQAVKMKRTPM------ 456

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          L+  LI +P  ++      A     +     L + + +   +   
Sbjct: 457 -------------RLLIALLIQNPYFVKFVPDVSALASLKDPGF-TLLTDIVATCQQNAG 502

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                + +   E    ++++ L     D        E   +D        L   ++  L+
Sbjct: 503 ISMGGLLEHYREDPQYKIVEALANW--DHLELPENIERTFIDTLDFLYAKLVELRKEELI 560

Query: 592 SRQK 595
           ++ +
Sbjct: 561 AKDR 564


>gi|226307185|ref|YP_002767145.1| DNA primase [Rhodococcus erythropolis PR4]
 gi|226186302|dbj|BAH34406.1| DNA primase [Rhodococcus erythropolis PR4]
          Length = 641

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 139/651 (21%), Positives = 244/651 (37%), Gaps = 40/651 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I +++G+YV   R             CPFHDEK+PSFH   + G 
Sbjct: 6   RISDRDIAAIRERTRIEDIVGEYVSLKRAG----GDSIKGLCPFHDEKSPSFHVRPNHGL 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   GD  SFL  +   SF+E+V++LA      +      P +++    +  LI 
Sbjct: 62  YHCFGCGEGGDVYSFLQKMDHISFVEAVEQLADRLSYTISYEGGGPSVQRDRGTRARLIA 121

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A +F+   L+    +    YL ER  D  A   F  GYAP+   +L +HL  KGF 
Sbjct: 122 ANAAAQEFYAARLREPDAQAARDYLTERNFDGAAALQFGCGYAPEGWDTLTKHLMSKGFE 181

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            +++  AGL  +        DRF  RL++PIRS  G VI FG R L   +++  KY+N+P
Sbjct: 182 FKELEAAGLSKE--GRRGPIDRFHRRLLWPIRSVAGDVIGFGARKLFDDDTMPGKYVNTP 239

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ETIL+ K + L+    A   + K              ++VEGY DV+++  AGV+  V+S
Sbjct: 240 ETILYKKSQVLFGLDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVKTAVAS 289

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV----NFVLL 353
            GTA  E  L +L +L                         +       ++       + 
Sbjct: 290 CGTAFGEEHLAMLRRLLMDDSYFRGEIIYTFDGDAAGQAAAMKAFEGDQKMAGQTFVAVA 349

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  A   L+    P+ + + K         T + R E        + 
Sbjct: 350 PDGMDPCDLRLKSGDAAVRDLVARRTPMFEFVVKSILTEHDLETAEGRVEALRRTVPVVA 409

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS--- 470
            IK+  LR  Y+  +   +       +          + + R        ++++++    
Sbjct: 410 QIKESTLRDSYANLLCGWVGWDDLPSVRRRVRDEARKRASTRGSSPAPKRRQVVEAPAAD 469

Query: 471 -------LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                  + + + +      + A+L   + HP I    +  L    + +     +   + 
Sbjct: 470 ALALPIGISRPRPNDPALSTQRAVLKAALQHPGIAGSVFDSLPPETFTHPAYVVIRQAMA 529

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                 K     E  + + +      +  +  ++    +          D    Y   + 
Sbjct: 530 DAGGTSKGLGGAEWIEVVTKGVEDMTVASVVSELAVEPMPC------DEDTVPRYINGVL 583

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              +   +  Q  +++ ++ +V+     E+   L   L  +     Q+  Q
Sbjct: 584 ARLQEAWVGEQVADLKSKLQRVSPAAAPEEYNSLFGDLVALEQYRRQLREQ 634


>gi|293189580|ref|ZP_06608299.1| DNA primase [Actinomyces odontolyticus F0309]
 gi|292821480|gb|EFF80420.1| DNA primase [Actinomyces odontolyticus F0309]
          Length = 656

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 149/670 (22%), Positives = 255/670 (38%), Gaps = 67/670 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I+ +   + I  +IG++V           G     CPFHDE+TPSF+     G +
Sbjct: 5   IRKDDIEAVRNAVKIDEIIGEHVALRPAG----IGSLKGLCPFHDERTPSFNVRPHLGMF 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119
           +CF C   GD +SF+  +    F E+V+ LAA AG+ L   +     + +    +  L+ 
Sbjct: 61  HCFGCGESGDVISFVQKIDHLPFTEAVEMLAAKAGITLHYEEGGARVRTEEPGKRQRLLD 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              VA +F+   L +    +   +L ERG        F +GYAP S  SL  HLR KGF+
Sbjct: 121 AHRVAEEFYQQQLASPEAHKGRTFLAERGFTQAMCAHFGVGYAPASWDSLTRHLRSKGFT 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLNSP 237
           +++I  +GL      S   YDRFR RL++PIR   G  + FG R L   +    KYLN+P
Sbjct: 181 DQEIQISGLGSQ--GSRGVYDRFRGRLVWPIRDITGATVGFGARRLDDSDKESPKYLNTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++ K + LY    A   +           +   +++VEGY DV++   AGV N V++
Sbjct: 239 ETPIYKKSQLLYGLDLAKKTIA----------TEHKVVIVEGYTDVMAAHVAGVTNAVAT 288

Query: 298 LGTALTEYQLRLLWK-------------------LSPRIVLCFDGDDPGLRAAYKAIDLV 338
            GTA     ++++ +                       ++  FDGD  G +AA +A    
Sbjct: 289 CGTAFGSEHVKIIRRLLGDHADPAAGVLLSTGRAHGSEVIFTFDGDSAGQKAALRAYGED 348

Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398
                   +    +   G+DP       G  A   L+   +PL +   +         + 
Sbjct: 349 QNFAA---QTFVAVAPGGQDPCDLRLSQGDQAIVDLVNSRIPLFEFAIRSVLSQMDLRSA 405

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW--KKNARH 456
           + R +        + HIKD+ LR  Y++ +   L              GR       AR 
Sbjct: 406 EGRVQGLRASAGIVAHIKDRALRAEYTRQLAGWLGMDIPTVEQAIRAAGRVEVLSHEARP 465

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP-AILQEQYQELADIRYDNNEL 515
            + +         +  +       S  E   L  ++ HP   +   ++EL    +     
Sbjct: 466 GEIEMAGAGRPVPASERRGPEDPVSRIERQALEAVLQHPLYAVGSGFEELDGQSFTVPTH 525

Query: 516 QKLWSFL----------------FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           + +   +                 + F   +        + +      E   +       
Sbjct: 526 RAVHDAIRAVGGLDAFTQMMRQAEAHFGPGENATLAASRRFVQ--VVLETAGEFIGPAVT 583

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
               +    A   DVR   +  +A   R   L+R+  E    ++++    +    + +  
Sbjct: 584 QLAVAPLPVAGEADVRSYCRGVVAAMVRM-DLTRKLGEARAALSRLNE--DDPTYSEMFR 640

Query: 620 ILHEVHIQIH 629
            L  +  +  
Sbjct: 641 ELMRLEQRRQ 650


>gi|188585840|ref|YP_001917385.1| DNA primase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350527|gb|ACB84797.1| DNA primase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 626

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 161/636 (25%), Positives = 293/636 (46%), Gaps = 43/636 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+ +     +  +  +YV+  ++        YW  CPFH EKTPSFH +  K  
Sbjct: 4   RIPQEIIERIQAEADLVEIASRYVNLKKQGK-----YYWGLCPFHSEKTPSFHISPEKQL 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLI 118
           YYCF C   G+   FL ++   +F+E  Q+L    G+ LP      +   ++ + +  + 
Sbjct: 59  YYCFGCQAGGNVFKFLESIEQLNFVEVCQKLGEELGIELPADSQDSQELSQEMQEREIIK 118

Query: 119 RLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  + A +FF + L N    K    YL +R ID   +  F +GYAPD+   L + L++KG
Sbjct: 119 KANKYAANFFRYVLMNTETGKSGRKYLADRKIDKQTMADFFIGYAPDNWTGLSDFLKKKG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNS 236
           F+EE +++AGL          YDRFR R+IFPI + RG+VI FGGR L + E   KYLNS
Sbjct: 179 FTEELLVKAGLSNRRKYREGVYDRFRGRVIFPIYNQRGEVIGFGGRLLEESEKQPKYLNS 238

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F+K  +LY    A   ++K           +  +++EGY DV++  Q GV   V+
Sbjct: 239 PETPVFNKRLSLYGLNLAFKTIRK----------ENHALVMEGYTDVITAHQFGVNTAVA 288

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+LTE Q +L+   + +  + FD D  G  A  + +++       G  V    L   
Sbjct: 289 SLGTSLTEEQAKLIRNNASKAYIAFDADAAGETATLRGLEI---LQSKGLDVLICQLPES 345

Query: 357 EDPDSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPD +++ YG   F+ K++  +LPL +   ++  +N++ +T + + +    +   I+ I
Sbjct: 346 YDPDEYLKNYGLENFQKKILDTALPLTEYQIRQAAKNKNLSTIEGKKQYVTEIIPIISKI 405

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR-------DQKGPSQRLMQ 468
            +   R  Y   + ++L    +   +E   Y R   +N  +R       ++K   +    
Sbjct: 406 DNAVEREEYLNQVSEQLGISQEALNSELMKYFRKNYRNKNYRKMDKTGVNRKNKRKNNGS 465

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            ++            E  L+  +++ P   +E  + L    + ++ L  +   L+     
Sbjct: 466 ETVKFADKRTPREKAEEGLVALMLHFPEYTEEVNKFLYPEDFSSDTLALIVHKLYQLKNH 525

Query: 529 QKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                   + Q L +      ++ +L  +                D+ +  +  +    +
Sbjct: 526 DIELDLSNLTQELRDHPDAENIITKLGMKDFPQ----------PKDIEKFVKDCV-FRIK 574

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
              +  Q+EE++K+++Q+    E ++   ++  L +
Sbjct: 575 ESRIKSQREELQKELSQINPDHEPDRYREILRKLQD 610


>gi|227329606|ref|ZP_03833630.1| DNA primase [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 584

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 170/608 (27%), Positives = 281/608 (46%), Gaps = 49/608 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+++ LA   G+ +P        + +   +  L  
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVETIEELATQYGLEVPYETGTGPTQLERHQRQSLYE 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+   + F+  +L  +       YL +RG+ +  I  F +G+AP    ++ +   +    
Sbjct: 119 LMGQLSGFYQQALSQSVGTPALQYLQQRGLSAEVISHFAIGFAPPGWDNVLKRFGRNNDD 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  ++   +YDRFR R++FPIR  RG+VIAFGGR L    + KYLNSPET
Sbjct: 179 RSTLNDAGMLV-TNDQGRTYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEAQQNHAELKR----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATDLVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ + ++LPL   L++   +    ++PD R +L       I  +  + 
Sbjct: 347 DTLVRKEGKVAFEQRMEQALPLSQFLFETLQQQVDMSSPDGRTKLSTLALPLIGQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +           ++ +    K  +                
Sbjct: 407 LRLYLRQQLGNKLGILDDSQLDRLLPKVAEQAQSYQPPQLKVTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                  L+  L+ +P +  E     L  I  D      L+  L              + 
Sbjct: 452 -----RILIGLLVQNPRLAAEVPDLALEGIEEDKVAGLSLFQDLVKTCNVSPGMNMGLLL 506

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-------LYKRFRLL 591
           ++  +  + + L+ +        +     E   + + + Y Q L           R   L
Sbjct: 507 EKYRDSKYRKQLETMASW-NHMIVEEELDEKFRISLAELYDQLLKQRQETLIARDRTHGL 565

Query: 592 S-RQKEEI 598
           + ++K+E+
Sbjct: 566 NTKEKKEL 573


>gi|154502791|ref|ZP_02039851.1| hypothetical protein RUMGNA_00605 [Ruminococcus gnavus ATCC 29149]
 gi|153796674|gb|EDN79094.1| hypothetical protein RUMGNA_00605 [Ruminococcus gnavus ATCC 29149]
          Length = 591

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 152/615 (24%), Positives = 263/615 (42%), Gaps = 45/615 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I+++     I ++I  YV   ++ +      Y+  CPFH+EK+PSF  +  K 
Sbjct: 1   MYYSEEVIEEVRTKNDIVDVISGYVRLQKKGS-----SYFGLCPFHNEKSPSFSVSREKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+  +FL      SF+E+++ LA  AGV LP      + + +   +T L+
Sbjct: 56  MYYCFGCGAGGNVFTFLMDYENFSFVEALKFLADRAGVVLPEMEYSKEAKARADRKTQLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A  +F+  LK+ + K  H YL  R +    I+ F LGY+      L  +LR++G+
Sbjct: 116 EINKLAAQYFYVQLKSEQGKTAHAYLTGRQLSEETIKAFGLGYSSKYSDDLFRYLRKRGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +E+ I +AGL I+ D     YD+F NR++FPI     +VI FGGR +      KYLNSPE
Sbjct: 176 TEDLIRQAGL-INTDEKNGVYDKFWNRVMFPIMDVNNRVIGFGGRVM-GDAKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K +NLY    A              +   + ++ EGYMDV++L QAG  N V+SL
Sbjct: 234 TEIFDKSRNLYGLNRAR------------TSRKPYFLVCEGYMDVIALHQAGFTNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     L+ +    + L +D D+ G RAA +A+ +       G     + +   +D
Sbjct: 282 GTALTTGHAALIKRYVQEVYLTYDSDEAGTRAALRAVPI---LKEAGITAKVIRMDPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G   FE+ I  +        +   +    N+P+ +          +   +D+
Sbjct: 339 PDEFIKNLGAEEFERRIGNARNGFMFGLEMLEKEYDMNSPEGKTAFFQEAARRLIGFEDE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+    +   +      +       K A       P +R  Q++  +     
Sbjct: 399 LERNNYIEAVAGTYRATVESLQKLVA-------KMAVREGMAKPVERPKQATGSEKPKED 451

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              + +  LL  +I    +     + ++   +       +  FL+  + E     P +I 
Sbjct: 452 GAKISQKILLTWMIEDRRLFGIIQKYISPEDFPEPLYHTVAEFLYHQYEEG-ELNPAKIL 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-------------QALALY 585
               +         L              E  + +     +               +   
Sbjct: 511 NHFTKEEEHREAASLFHTKIQKLTTKEEREKALQETIVKVKTHSIDYRTMHLEPTDIIGL 570

Query: 586 KRFRLLSRQKEEIEK 600
           ++     R+ ++++K
Sbjct: 571 QKLMEEKRKLDDLKK 585


>gi|197301815|ref|ZP_03166885.1| hypothetical protein RUMLAC_00541 [Ruminococcus lactaris ATCC
           29176]
 gi|197299255|gb|EDY33785.1| hypothetical protein RUMLAC_00541 [Ruminococcus lactaris ATCC
           29176]
          Length = 594

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 161/628 (25%), Positives = 267/628 (42%), Gaps = 48/628 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I+++     I ++I  YV   ++ +      Y+  CPFH+EK+PSF  +  K 
Sbjct: 5   MYYSEELIEEVRSRNDIVDVISGYVRLQKKGS-----SYFGLCPFHNEKSPSFSVSRQKQ 59

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118
            YYCF C   G+  +FL      SF+E+++ LA  AG+ LP      + +++  ++  ++
Sbjct: 60  MYYCFGCGAGGNVFTFLMEYENFSFVEAMKYLADRAGIELPEQEYSKEAKERADLKATIL 119

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +  +A  +F+  LKN R    + YL +R +    I  F LGY+      L ++LR KG+
Sbjct: 120 EMNRLAAKYFYVQLKNERGFHAYRYLKDRQLSDEMILAFGLGYSNPYSDDLYKYLRGKGY 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           SEE I +AGL I+ D     YD+F NR++FPI     +VI FGGR +      KYLNSPE
Sbjct: 180 SEELIRKAGL-INTDERQGVYDKFWNRVMFPIMDVNNRVIGFGGRVM-GDGKPKYLNSPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K +NLY    A              +   + +L EGYMDV+SL QAG  N V+SL
Sbjct: 238 TVVFDKSRNLYGLNRAR------------TSRKPYFLLCEGYMDVISLHQAGFTNAVASL 285

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     L+ +    + L +D DD G RAA +A+ +       G     + +   +D
Sbjct: 286 GTALTAGHASLIKRYVKEVYLTYDSDDAGTRAALRAVPI---LREAGISAKVIRMDPYKD 342

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G   +EK I  +        +        N+P+ + E    +   +   +D+
Sbjct: 343 PDEFIKNLGAEEYEKRIQAARNGFMFSLEMLEREFDMNSPEGKTEFFREVSRRLLTFEDE 402

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+          Y        +   K A       P  R  ++  V+ K   
Sbjct: 403 LERNNYIEAVA-------TAYRISRDSLDKMVAKTAVSAGMARPVVRPKRADGVEKKKED 455

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              L + ALL  +I    +  +    ++   +  +  + +   L+    E     P +I 
Sbjct: 456 GIHLSQKALLTWMIEEERLFDQISNYISPGDFTEDLYRTVAELLYEQRKEGG-LNPAKIL 514

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                      +  L          +   E +  + R+   +   L  +   +  Q   +
Sbjct: 515 NHFTGEEEHREVASLFN--------TRIRELHTKEEREQALRETILKVKASGIDYQTMNL 566

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHI 626
                      +      L+    ++  
Sbjct: 567 --------DPTDMAGLQKLMEEKRKLEN 586


>gi|225575012|ref|ZP_03783622.1| hypothetical protein RUMHYD_03092 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037763|gb|EEG48009.1| hypothetical protein RUMHYD_03092 [Blautia hydrogenotrophica DSM
           10507]
          Length = 593

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 159/636 (25%), Positives = 273/636 (42%), Gaps = 50/636 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  D I+++     I ++I QYV   R+ +      Y+  CPFH+EK+PSF  +  K 
Sbjct: 1   MRYSDDIIEEVRTKNDIVDVISQYVKLQRKGS-----SYFGLCPFHNEKSPSFSVSPGKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLI 118
            YYCF C   G+  +F+      +F+E++Q LA  A V LP VD   + ++    +  L+
Sbjct: 56  MYYCFGCGAGGNVFTFVMEYENFTFVEAMQYLAERASVELPKVDYSKEAKEAADKKAALL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A  +F++ L+    ++   YL ERG+    ++ F LGY+      L ++L+ KG+
Sbjct: 116 EINKLAAQYFYYQLRRQNGQKAWKYLVERGLTEETMKKFGLGYSDKYSDDLYKYLKGKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            +E + ++GL          YD+F NR+IFPI     +VI FGGR +      KYLNSPE
Sbjct: 176 KDEVLRDSGLFNVD-ERRGMYDKFWNRVIFPIMDVNSRVIGFGGRVM-GDGKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K +NLY    A    +K            ++I+ EGYMDV+++ QAG  N V+SL
Sbjct: 234 TKIFDKSRNLYGLNAARTTRRK------------YLIVCEGYMDVITMHQAGFTNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     LL + +  + L +D D+ G+RAA + I +       G     V L+  +D
Sbjct: 282 GTALTSGHASLLKRYTQEVRLLYDSDEAGIRAALRGIPI---LREAGVATRVVNLAPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AF++ +  ++       +   +N + + P  + E    +   +    ++
Sbjct: 339 PDEFIKALGAEAFQERLDRAVNGFLFRVQAAQKNYNLSDPQGKTEFFHQVAEMLLEFPEE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +AI    +   ++     S          R    K   +        KG+   
Sbjct: 399 LERSNYIEAIAQEYRISPEELKRAVSRQAMKGTVAERRMVPKETRKS-------KGQKEN 451

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  +L  L N P       + L    +     +++   LF    E        + 
Sbjct: 452 GAQKAQKLMLTWLANEPETYSTVKKYLGPEDFTTELYRRVAGMLFEQL-EDGQVSLARLL 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               +      +  L                +  +  + +  AL +  +   L  Q E++
Sbjct: 511 NPFTDSEEQTEITSLFHADIHLE--------SQEEKNRAFADAL-IRIKENSLREQTEKL 561

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                   A  + E    LI    ++  ++ +   +
Sbjct: 562 --------APTDIEGLQRLIQEKKKLE-EMSRRRGE 588


>gi|282861772|ref|ZP_06270836.1| DNA primase [Streptomyces sp. ACTE]
 gi|282563588|gb|EFB69126.1| DNA primase [Streptomyces sp. ACTE]
          Length = 635

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 147/660 (22%), Positives = 262/660 (39%), Gaps = 54/660 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  + SKG 
Sbjct: 4   RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD ++F+  +   +F E+V+RLA  AG+ L   +       +   +  L+ 
Sbjct: 60  FHCFGCQEGGDTIAFVMKIDHLTFSETVERLAGQAGITLRYEEGGYNPSHQRGERIRLVE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             ++A DF+   L  A  +    +L ERG D  A   F +GY+P     L  +LR KGFS
Sbjct: 120 AHKIAADFYREQLNGAEAEIGRRFLAERGFDQDAAAHFGVGYSPAGWDHLTRYLRGKGFS 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           + ++I +GL    D      DRFR RL++PI  + G  + FG R L   ++  KYLN+PE
Sbjct: 180 DRELISSGL--SQDGRRGPIDRFRGRLMWPISDTSGDTVGFGARKLRDDDNGPKYLNTPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K + LY    A   + K+ R           ++VEGY DV++   AGV   +++ 
Sbjct: 238 TAIYKKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIATC 287

Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           GT+     +++L +L       R++  FDGD  G +AA +A +               + 
Sbjct: 288 GTSFGNDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIA 344

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DP       G  A   L+    PL +   ++        TP  RA         + 
Sbjct: 345 PDNMDPCDLRLAKGDDAVRDLVEPRTPLFEFALRQIVGRYDLETPAGRAAALDEAAPVVA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-----------KGP 462
            IK+   ++  +  +   L  L  +++ +  G    W ++   R             +  
Sbjct: 405 RIKNSSSQHEVAVQLAGLLGILDTQFVVKRVGQLARWARDRGERGPAPGGPSRGGSGQHQ 464

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           +      S     L       E  LL   +  PA++   +    +  +       +   +
Sbjct: 465 ASAPRPPSGPALNLRSPAHRTERELLKLALQKPALVAPAFDAYGEDEFTAPPYAAVRRCI 524

Query: 523 FSDFVEQKYFLP-----EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
                 ++           +     +     L+ +L  +V                + + 
Sbjct: 525 AEAGGAEQGLAETRDYLAAVLDAAPDDTVRNLVTELAVEVFHG-----------KSIDET 573

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Y     +  R R + R+  +++  +A++      +  A   + +  +      + S  A 
Sbjct: 574 YAGMQLVQVRLRAVDRRIHDVQGSLARLGHNVAPDHLAAAQNEVWVLQQYAESLRSHGAA 633


>gi|227488422|ref|ZP_03918738.1| DNA primase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091636|gb|EEI26948.1| DNA primase [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 625

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 143/640 (22%), Positives = 246/640 (38%), Gaps = 36/640 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +  + PI  ++G+YV                  PF DEKTPSFH   + G+
Sbjct: 5   RIPEEDIDYIRENTPIEEIVGEYVQLKPAGA----DSLKGLSPFKDEKTPSFHVRPNHGY 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           ++ FS    GD  SFL  L   +F E+V+  A   G  +          +K   +  L+ 
Sbjct: 61  FHDFSSGEGGDVFSFLMKLEHLTFPEAVEYCADKIGYHINYQGGGTGTREKAGTRQRLVA 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +   A  FF   L+    +R   YL ERG  +     F  GYAP    +L +HL + GFS
Sbjct: 121 INAEAHRFFVEKLQEPEAERARAYLTERGFTAEHARHFGCGYAPGGWDTLTKHLLRMGFS 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
            E++  AG+           DRF  RLI+PI++  G VI FG R L   +   KYLN+PE
Sbjct: 181 AEELEAAGVTS--MGRRGPIDRFHRRLIWPIKNLAGDVIGFGARKLFDDDKLGKYLNTPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T+L+ K K L+    A   +                ++VEGY DV+++  AG+   V+S 
Sbjct: 239 TMLYKKSKVLFGIDLAKRNIA----------QGHQCVVVEGYTDVMAMHAAGITTAVASC 288

Query: 299 GTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  E  L+L+ +L          I+  FDGD+ G +AA +A +               
Sbjct: 289 GTAFGEDHLQLIRRLMLDDRTFRGEIIYTFDGDEAGQKAAMRAFEGSQEFSG---SSFVA 345

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP    +  G  A   LI   +P+++ + K         T + R +    +   
Sbjct: 346 VAPGGMDPCELRQDKGDVALRDLIARRMPMLEFVVKTILGQYDVGTIEGRLQAVRRVVPM 405

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I  I+D  LR  Y+  +   +  L +  ++            A     +G S +   +++
Sbjct: 406 IGAIRDPALRSQYALQLSGWVGWLNEDELSRMVEDASRRPAAAPQAATRGASPQPTPTTV 465

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
           +           +   L   +  P +    + EL    + +   + +   + +       
Sbjct: 466 LPDPRDPALWP-QRESLKIALQAPDLAGASFDELDPEGFFHPVYRTIRDGIAAAGGASGG 524

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                    + +      +K L   +    +          D  + Y           ++
Sbjct: 525 DGKAGWIAAITDAIVDPAVKNLVSALAVEEIR------TDADHFEAYMDGAFARLEEGVV 578

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           + Q   ++  +++     + E    + S L  +     ++
Sbjct: 579 ANQISNLKATLSRTRPSDDPEAYNAMFSDLLVLEQVRQEL 618


>gi|269836447|ref|YP_003318675.1| DNA primase [Sphaerobacter thermophilus DSM 20745]
 gi|269785710|gb|ACZ37853.1| DNA primase [Sphaerobacter thermophilus DSM 20745]
          Length = 615

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 160/639 (25%), Positives = 269/639 (42%), Gaps = 67/639 (10%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           +  +     I  +IGQ+V   +   N     +   CPFH EKTPSF        ++CF C
Sbjct: 6   VDQVRERTDIVEVIGQHVTLRKAGRN-----FKGLCPFHQEKTPSFIVFPETQTFHCFGC 60

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
            V GD  +F+       F E++Q LA  AGV L    P   +  +    L  L   A  F
Sbjct: 61  GVGGDVFNFVMQFERVDFREALQTLAQRAGVTLEQAAPPPPEVVERHARLYELNARAASF 120

Query: 128 FHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEA 186
           +   L N          L+ RG+D    E F+LG+APD   +L   + ++G ++E+++ A
Sbjct: 121 YAWVLWNSPHGAPGRELLERRGVDRATAERFQLGFAPDRWDALLTWMLKRGATQEEVVAA 180

Query: 187 GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK 246
           GL    D+   +YDRFRNRL+FPIR   G+V+ FGGR L      KYLN+ +T +F KGK
Sbjct: 181 GLATQRDDG-GAYDRFRNRLMFPIRDREGRVVGFGGRAL-GDAQPKYLNTAQTAIFDKGK 238

Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306
            LY    A + +++          +  +++VEGYMD ++  Q G +NVV+S+GTALTE Q
Sbjct: 239 ILYALDLAQDAIRR----------THEVVVVEGYMDAIAAHQHGFENVVASMGTALTEEQ 288

Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAID------------------LVLCHLIPGNRV 348
           ++ + +   RI+L  D D  G  A  + +D                  LV         +
Sbjct: 289 VKQIRRGVDRIILALDADAAGQMATLRGLDVLRESLGEADRPVLDARGLVRFERTLKADI 348

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
               L  G+DPD  IR     A+   + E+ PL+D        +     P E++EL   +
Sbjct: 349 RIAPLPEGQDPDDLIR-RDPDAWRAAVAEAKPLLDFYIDAVIGDTPPTDPREKSELVDRI 407

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              +  I D+ +R +Y   +  RL       +       R  ++   +R ++  +     
Sbjct: 408 GPVVREIGDEVVRAHYVAEVSRRLGLPEHVILRARPATSRRIRREDAYRPRRPIASP--- 464

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                          E  LL  ++ +P I+     ++ +    +   + L   L     E
Sbjct: 465 ---------------EEHLLALVVTYPEIVAPLIPQVPEEDLLDTRHRALLRLLTGVTPE 509

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
           Q   +  +           E ++ L        L +         +R  + + +   +R 
Sbjct: 510 QAAAVVAD-----PPEELREHVEAL------RELMAERPPVYPGQIRIEFDEVIRRLRRE 558

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           R    +  +++ +I +    G+ E    +I ++  +  +
Sbjct: 559 RF-DFRMAQLQAEIHEAERAGDREALRHIIGLIETLKSR 596


>gi|332086938|gb|EGI92073.1| DNA primase [Shigella dysenteriae 155-74]
          Length = 582

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 177/629 (28%), Positives = 291/629 (46%), Gaps = 53/629 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  SLK         YL++RG+    I  F +G+AP    ++ +       +
Sbjct: 119 LMDGLNTFYQQSLKQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCF-DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           T+ T   ++LL+    +      DGD  G  AA++A++  L ++  G ++ F+ L  GED
Sbjct: 287 TSTTADHIQLLFPRDQQCHFAVIDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGED 346

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD+ +R  GK AFE  + +++PL   L+         +TPD RA L       I+ +  +
Sbjct: 347 PDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGE 406

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            LR Y  Q + ++L  L    +             A       P  +L ++++       
Sbjct: 407 TLRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM------- 452

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                   L+  L+ +P +                 L  L+  L +  + Q      ++ 
Sbjct: 453 ------RILIGLLVQNPELATLVPPLENQDENKLPGLG-LFRELVNTCLPQPGLTTGQLL 505

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           +          L++L        +W    + NI    Q +  +L  +    LL  ++EE+
Sbjct: 506 EHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEEL 555

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             +  + T     E+   L ++  E+  +
Sbjct: 556 IAR--EHTHGLSNEERLELWTLNQELAKK 582


>gi|95929000|ref|ZP_01311745.1| DNA primase [Desulfuromonas acetoxidans DSM 684]
 gi|95134901|gb|EAT16555.1| DNA primase [Desulfuromonas acetoxidans DSM 684]
          Length = 603

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 169/632 (26%), Positives = 290/632 (45%), Gaps = 36/632 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P D I  +   + I +++  YV       N     +   CPFH EKTPSF+ N S+  
Sbjct: 3   RIPEDLISQVRERVDIVDVVSGYVKLKHSGDN-----HLGLCPFHSEKTPSFNVNSSRQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIR 119
           ++CF C V G+  SFL  + G +F ++V+RLA   GV +P     P+  ++   + +L  
Sbjct: 58  FHCFGCGVGGNVFSFLMRMEGLAFPQAVKRLADQVGVVIPDDEPSPEEVRRRLEREELAE 117

Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + E AT F+H  L  + R  +   Y+  RG DS A+  F+LG++PDS  +L EHL  +G 
Sbjct: 118 VYEQATRFYHDILLADPRGAQARGYIRRRGFDSEAVRRFRLGFSPDSWDALCEHLTSEGT 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             +K  + GL+   D +   +D FR RL+FPI    G+V+AFGGR L      KY+NSPE
Sbjct: 178 DLDKARQLGLIRRSDKTGNDFDMFRQRLLFPIEDLSGKVVAFGGRVL-DDSLPKYINSPE 236

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + L+HK + LY  + A   +++             +I+VEGY D L+L QAG+++VV++ 
Sbjct: 237 SALYHKSRLLYGLYQAKQAMRR----------ERAVIVVEGYFDHLALVQAGIEHVVATC 286

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT+   ++L +   R+VL FD D  G +        +   L  G  V  + L  G+D
Sbjct: 287 GTALTDDHAKILKRYVERVVLLFDEDAAGQK---ACFRAMPSLLQQGLEVMTLSLPAGDD 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  G  AF + + E+   +++  +   E    +  + +A     +   +  + D 
Sbjct: 344 PDSCVRREGAEAFLQRLNEARSAIEVHMEVTLEQA-GDRAEAQARAIDTVLQMMQRVPDD 402

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  +   +  R     +    +        +        +   +  +    V+ +  +
Sbjct: 403 IQRNLHLGQLAQRSGVTVELLQRQLERT--QVEDQPPAPRPQPAPRPAVAPRPVEPEEIQ 460

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LL  ++    +     ++  D  +DN   QK+   +     EQ+    E + 
Sbjct: 461 GDFKAQKWLLTLMLADGGVSGTVEEQGIDALFDNAVCQKVAQQIQRAHAEQREP-GEWML 519

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            +  +    +LL QL   VR+  L S   E    D RQ   ++         L +++ E+
Sbjct: 520 DQCEDPRAQDLLTQL--LVREQELVSDDIEKIFGDCRQAVVRS--------QLKQRRAEL 569

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             Q+      G++EK    +  L  ++ ++ +
Sbjct: 570 HTQMRAAEQHGDSEKQTACLQELTRINRELKR 601


>gi|56963454|ref|YP_175185.1| DNA primase DnaG [Bacillus clausii KSM-K16]
 gi|56909697|dbj|BAD64224.1| DNA primase DnaG [Bacillus clausii KSM-K16]
          Length = 603

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 158/633 (24%), Positives = 271/633 (42%), Gaps = 40/633 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + + ++     I  +IG+YV   ++        Y   CPFHDEKTPSF  ++ K  
Sbjct: 4   KIPDEKLTEVREASDIVEVIGEYVQLKKQGRQ-----YGGLCPFHDEKTPSFSVSEDKQV 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIR 119
           Y+CF C   G+  +FL  L G SF E+V  LA  A + LP        + ++     + +
Sbjct: 59  YHCFGCGAGGNVFTFLQELKGWSFSETVSHLAERAKIALPQMQKTETDKPEDARIRQMKK 118

Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             E+A   +H  L           Y  ER      IE F++GYA +   +L       G 
Sbjct: 119 GHELAASTYHSILTLTEEGAPGRVYAQERLFTQDQIEHFRIGYALNDWETLAVIFETNGL 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
               + E+GLL         YD FR RL+FPI  S+G V+AFGGR + +G+  KYLNSPE
Sbjct: 179 DLAVMAESGLLAKRKQGTGYYDLFRERLMFPITDSQGSVVAFGGRAIGEGQP-KYLNSPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHK K L++   A   ++K  +           +LVEG  DV++  +AGV NVV++L
Sbjct: 238 TPIFHKAKTLFHMHEARPSIRKQNKA----------LLVEGAFDVMAAWKAGVTNVVATL 287

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTAL+    +LL + +  ++LC+DGD  G  A  KAI +       G +V+  LL  G D
Sbjct: 288 GTALSSDHAKLLRRNAEEVILCYDGDRAGREAIRKAIPV---LEEAGCKVSICLLPEGLD 344

Query: 359 PDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD +++ +G+ AF   L  E L ++        + ++     +R +    +   +  ++ 
Sbjct: 345 PDDYVKQHGEEAFVRILDNECLSVMAFRMLDLKQGKNMQNEGDRLQYIEEIVQMLAKLEH 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKL 476
              + YY Q + +           E S   R  K+            +          + 
Sbjct: 405 SVEQEYYLQQLAESFTLPMDVLRQELSRAERLLKQTKETPKALPRAEKPTSGRKQGSARP 464

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++    ++    ++L    ++  E Q L+++L S    +     + 
Sbjct: 465 VPAHVKAERILLAYMLQDTEMVWRVSEKLGT-GFNLEEHQALYAYLLSFVTREPDASMKR 523

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             + L +       ++L +      +     E +  ++    ++ +  Y ++  L  Q++
Sbjct: 524 FVESLED-------RRLAKLAAYLLMQPLKNECSDEELADYIKR-IEQYPKWVKLKEQQQ 575

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
               +        +  + A L   L  +  ++ 
Sbjct: 576 AARFE-------QDPIRAAKLQMELIRLKKELQ 601


>gi|291533681|emb|CBL06794.1| DNA primase, catalytic core [Megamonas hypermegale ART12/1]
          Length = 604

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 167/639 (26%), Positives = 289/639 (45%), Gaps = 41/639 (6%)

Query: 1   MN---YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           M       DF++ +     I ++I  YV   +R        YW CCPFH+EKTPSF    
Sbjct: 1   MRTQNLHDDFVEQVRSSSDILSVISSYVHLKKRGN-----RYWGCCPFHNEKTPSFSVVP 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQT 115
            +G +YCF CH  G+   F+S +   S+ E+++  A    +P+P      +  K+E+ + 
Sbjct: 56  QQGIFYCFGCHAGGNLFKFISLIENISYYEAIKLQAQRLNIPIPTTKKSADELKQEQQKD 115

Query: 116 DLIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            L ++ E+A  FFH+ L + +  +    Y   R I+S  I  FKLG+AP+    L     
Sbjct: 116 SLFKIHELAGSFFHNCLTRTSLGEAGRAYFSSRQINSDIITKFKLGFAPNLWDKLFTSFT 175

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           ++G ++E + +AGL I   +S   YDRFRNR+I PI +  GQ+  FGGR ++  +S KYL
Sbjct: 176 KRGITKELLAKAGL-ITIKDSGKVYDRFRNRIIIPIMNEHGQICGFGGRIINPNDSPKYL 234

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET++F+K   L+    A   ++           ++F I+VEGYMD ++L    + N 
Sbjct: 235 NSPETLIFNKRHLLFGLDHAQKSIK----------ENNFSIVVEGYMDAIALHSHNITNA 284

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGTA T  Q R + + SP I  C+D D+ G  A  +A+ +       G  V  + + 
Sbjct: 285 VASLGTAFTAQQCRKILRYSPNIYFCYDSDNAGQAATMRALAIASS---NGANVKVITIP 341

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G+DPD F+R +G   F  LI ++LPL++   +   ++   NT + +      L   + +
Sbjct: 342 DGKDPDEFLRHHGNKEFYALIDKALPLMEYQLQYVLKSTDRNTLEGKLLAVNQLMPLLAN 401

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I +   R  Y   I + L        ++        ++     D    +   + S     
Sbjct: 402 ITNTVERNEYIIRISNVLGIDEGVIRSDLQRQNS--QRKFNAYDVSTDNLPGINSRKAFS 459

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +     ++    ++  + +  +IL      +    + N    ++  +L S     + F  
Sbjct: 460 EKKDALTMAGRCIIKKIWHEASILDYVLNLIPAEEFPNKTHGEILKYLASTLANNQPFTD 519

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            +  ++L +  + EL   L              E    D  Q  +  L L +R+ L S  
Sbjct: 520 IDAAEKLSDTAYSELSHCL------------VEEFTTDDDIQLTEDCLKLLRRYYLNSNY 567

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             E  + +A    +    +    + I  ++ +++  + S
Sbjct: 568 --EKHRLLADELQRNGDSRFLEELKISQQIRMEMDNLSS 604


>gi|52081068|ref|YP_079859.1| DNA primase [Bacillus licheniformis ATCC 14580]
 gi|52786448|ref|YP_092277.1| DNA primase [Bacillus licheniformis ATCC 14580]
 gi|319644973|ref|ZP_07999206.1| DnaG protein [Bacillus sp. BT1B_CT2]
 gi|52004279|gb|AAU24221.1| DNA primase [Bacillus licheniformis ATCC 14580]
 gi|52348950|gb|AAU41584.1| DnaG [Bacillus licheniformis ATCC 14580]
 gi|317392782|gb|EFV73576.1| DnaG protein [Bacillus sp. BT1B_CT2]
          Length = 607

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 151/636 (23%), Positives = 285/636 (44%), Gaps = 40/636 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E TPSF  +  K  
Sbjct: 4   RIPDEIVEQVQKSADIVEVIGEYVQLRKQGRN-----YFGLCPFHGENTPSFSVSGEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK---EKIQTDLI 118
           ++CF C   G+  SFL  + G SF E+V  LA    + LP     +         +  + 
Sbjct: 59  FHCFGCGAGGNVFSFLRQMEGYSFTEAVSHLADKYQIDLPEQVAAVSAYSTGSSDEQKMA 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              ++   F+HH L      +    YL ERG     IE F++G A DS   + + L ++G
Sbjct: 119 EAHDLLKKFYHHLLVNTKEGQAALDYLLERGFKMEQIEQFEIGCALDSWDFITKFLERRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           F    +  AGL+I  +N    +DRFRNR++FPI    G  +AF GRT   GE  KY+NSP
Sbjct: 179 FDLALMERAGLIIRRENGDGYFDRFRNRIMFPIHDHHGTTVAFSGRTF-TGEQPKYMNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LF K K LY+F  A  +++K  R           +L EG+ DV+S   +GV+  +++
Sbjct: 238 ETPLFRKSKLLYHFHQARLHIRKEERA----------VLFEGFADVISAVTSGVKESIAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT+LTE   +++ +    ++LC+D D  G  A  KA ++       G  V   ++  G 
Sbjct: 288 MGTSLTEEHAKIIRRNVGEVILCYDSDHAGYEATLKAAEI---LQKKGCNVKVAMIPDGL 344

Query: 358 DPDSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD +I+ +G   F+  ++ + + ++        + R+ +   +R      +   ++ + 
Sbjct: 345 DPDDYIKKFGSEKFKNDVIGASVTMMTFKMNYFRKGRNLSDEGDRLAYINDVLKEVSLLS 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHS---GYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
               +  Y + + +     F+    + S          + +  +D K     + ++   K
Sbjct: 405 GPLEQEIYIKQLANEFSISFESLKDQLSVFEKQAASRSRESSRQDSKERQAAVSRAPRRK 464

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             L       E  LL  +I+   ++++  + +    ++ ++ + + ++L++ + E     
Sbjct: 465 TGLRPAHENAERMLLAHMIHDRDVIRKVLERVG-FEFNLDQHRAIAAYLYAMYEEGADIS 523

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            +E+ +R+ ++  G+LL  +        L     E         Y + +  Y+ + ++  
Sbjct: 524 IQELFKRVEDQELGQLLTDI--------LMLQVNEELSEAELSDYVKKVLNYRNWSMIKE 575

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +    E   A+   + +  K A L   + +++  + 
Sbjct: 576 K----EAARAEAERQKDFIKAATLAQEIVKLNRSLK 607


>gi|311747519|ref|ZP_07721304.1| DNA primase [Algoriphagus sp. PR1]
 gi|126574881|gb|EAZ79252.1| DNA primase [Algoriphagus sp. PR1]
          Length = 645

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 166/656 (25%), Positives = 292/656 (44%), Gaps = 44/656 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +   + +   + I  ++G YV   ++  N      WACCPFH+EK+PSF  + +K 
Sbjct: 1   MGISKLTTEKVKERVDIEEVVGDYVPLKKKGQNL-----WACCPFHNEKSPSFSVSPAKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDL 117
            Y CF C   GD + F+  + G  F E+++ LA   G+ +       P+ ++    +  L
Sbjct: 56  IYKCFGCGKAGDPIQFVMDVEGVGFTEAIRHLAGKYGIEVEEDEERTPEQDQAYSERESL 115

Query: 118 IRLIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
              +  A DFF  +L +   K +   Y  ERG  +  IE F LGYA D    L +  +  
Sbjct: 116 YIALGFARDFFVKNLLSPEGKSIGLSYFKERGFSNSIIEKFDLGYALDGWDHLLKAAKSS 175

Query: 177 GFSEEKIIEAGLL-IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYL 234
           GF EE +++AGL+     + +  YDRFR R+ F I +  G+ I FG R L+K +   KY+
Sbjct: 176 GFQEEILLKAGLILQKEGDPSRVYDRFRGRVTFAIHNIGGKPIGFGARILTKDKNQPKYI 235

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET ++HK   LY  + A   ++                LVEGY DV+S+  +G++NV
Sbjct: 236 NSPETAVYHKSDVLYGMYQAKKAIRAK----------DNCYLVEGYTDVISMHLSGIENV 285

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S GT+LTE Q++L+ + + ++ + +DGD  G++A+ + IDL    L  G  V  V+  
Sbjct: 286 VASSGTSLTEGQIKLIKRFTDQVTVLYDGDPAGIKASLRGIDL---LLEGGLNVKAVVFP 342

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            GEDPDS+ R  G  AF+  +VE+            ++     P  +AE+   +   I  
Sbjct: 343 EGEDPDSYSRKVGSQAFQDYLVENSRDFIGFKIGLYQDEFAKNPIRKAEVIREVIQSIGK 402

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM----QSS 470
           I D  +R  Y+Q     L+       TE +      +++   + ++ P   L       +
Sbjct: 403 IPDPIVRSVYAQEASSLLEVEEDVIHTELNKSLIKTQRDQFQKREEAPPHDLGFEEYLPT 462

Query: 471 LVKGKLSKKPSLREAALLLTLINHPA---------ILQEQYQELADIRYDNNELQKLWSF 521
             K   S    ++E  ++  L+N+           +      E AD++++    +K+   
Sbjct: 463 EEKSTASDSLKIQEKEMIRLLLNYGWEKIDHDELHLCDYLLAETADLKFETPVYEKILIT 522

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ- 580
                   +    +   +         ++  +  +   +  WS   +  I          
Sbjct: 523 YRQILNMGEAPTIDFFIRHQDSEMKSVVIDLITPRHEVSTHWSERHQIFINKENDNLSLT 582

Query: 581 --ALALYKRFRLLSRQKEEIEKQIAQVTAKGEA----EKTAILISILHEVHIQIHQ 630
                L  + R++ +  EE + +I    ++ +     E+   +   L +V ++I +
Sbjct: 583 GFKSILRLKRRVVQKMMEEAKMKIKTAESEKDETADIEELQKIYFELKKVQLEIDK 638


>gi|330505279|ref|YP_004382148.1| DNA primase [Pseudomonas mendocina NK-01]
 gi|328919565|gb|AEB60396.1| DNA primase [Pseudomonas mendocina NK-01]
          Length = 667

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 176/678 (25%), Positives = 292/678 (43%), Gaps = 88/678 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   +   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++++ LA  AG+ +P  +     + ++ + + L  L
Sbjct: 60  YCFGCGAGGNALGFVMDHDQLEFPQAIEELAKRAGMDVPREESGRGHKPRQPVDSPLYPL 119

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A + +  +LK+  + K    YL  RG+       F +G+AP    +L + L      
Sbjct: 120 LNAAAEHYRQALKSHPQRKYAVDYLKGRGLTGEIARDFGIGFAPPGWDNLLKQLGADALQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAENGRRYDRFRDRIMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  + +              I++VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLYEARKHNRDL----------DEIMVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L  L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDAAGRNAAWRALESTLPSLQDGRRARFLFLPDGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF   +   + PL D  +++  E     + + +A L       I+ I   
Sbjct: 349 DTLVRAEGTDAFRARINQHAQPLADYFFQQLCEEADPRSLEGKAHLVTLAAPLIDKIPGN 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ------------RL 466
            LR    Q + + L  L  + +++ +   R    +                        L
Sbjct: 409 NLRALMRQRLSE-LTGLSGEAMSQVASAPRSHAPSTPSHTHSSDYPDYGDIPDSAYYDSL 467

Query: 467 MQSSLVKGKLSKKPSLREAA---------------------------------------- 486
                 +     +    E                                          
Sbjct: 468 PDVGGYEQPAPPQQQHYERQNEGGKGSWKKEGGGKWSKKGKGDFSPRAPRTAVSVESPHL 527

Query: 487 -LLLTLINHPAILQEQYQELADIRYDNNE--LQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
             L TL++HP + Q+         + + E    +L   L     +       ++  R   
Sbjct: 528 IALRTLLHHPQLAQKVED---VSHFADEEDTYAQLLVALVGALQKTPNLRSLQLIARWHG 584

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
              G LL+ L  +      W    +    ++ Q +   +      +   R+++ +   I 
Sbjct: 585 TEQGRLLRALAEKE-----WLIQGD----NLEQQFFDTITTLANSQSQRRREKALRSIIH 635

Query: 604 QVTAKGEAEKTAILISIL 621
           +  ++   E+  +L    
Sbjct: 636 KSPSELTDEEKTLLREHY 653


>gi|325125920|gb|ADY85250.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 612

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 153/640 (23%), Positives = 283/640 (44%), Gaps = 40/640 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               DFI ++   + I ++I QYV  ++R       DY   CPFH EKTPSF  N  K F
Sbjct: 4   RISEDFINEVRGSVNIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFSVNPDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           +YCF CH  G+   F+      +F ESV+R+A  A +P+P    +   K      L+++ 
Sbjct: 59  FYCFGCHKGGNVYKFIMEKEEVTFPESVERVAEFANIPMPQEYQEQPVKLNP---LMQMH 115

Query: 122 EVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A DF+   L      +R   Y  +RG+D   ++ FK+GYAP     L  +LR +G+++
Sbjct: 116 KEAADFYQQVLMTTKIGERGLEYARKRGLDDDLLKHFKIGYAPGKSDLLLTYLRGEGYTD 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239
            ++ E+GL +   +    +DRFR+RL+FP+    G ++AF GR +S   E  KYLNSPET
Sbjct: 176 NQLAESGLFVKSQDG-RLFDRFRDRLMFPMSDESGHLVAFSGRRISDDPEEPKYLNSPET 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K   L++F  A  + +K             ++L EG+MDV+S  +AGV+  ++S+G
Sbjct: 235 SIFNKSDLLFHFSEAKKHARK----------EGHLVLFEGHMDVISAYKAGVKTGIASMG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ ++ +++ ++V+ +DGDDPG  A  +A+ L          +  V+L    DP
Sbjct: 285 TSLTQQQVYMIRRITKQVVINYDGDDPGQHATERAVGLFKQAGNFDLGI--VILPDKLDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG  +++  I  ++   D   +R  +  + N   E+          I  + +  
Sbjct: 343 DEYVKQYGPDSYQAAIRGAISTTDFFLQRLKKKYNINNEREQVAYLSEAVAEIAALPNPV 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y   +               S   R  ++  +H   +   +    +     +   +
Sbjct: 403 EQELYVGRLAKETGVSLDALKVNLSRARRKQRRVDQHTSSEVLPELAPLTPAADPQPVTR 462

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               +  LL   I            +    + N E ++L     +     +         
Sbjct: 463 ALKAQQRLLYAYIYSDEARDYLI--VNGFVFPNPEYERLAKLWLNYIETHENVSLSGFLD 520

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            + E        +L   +    +     E  + ++ +   + L L K    + R      
Sbjct: 521 FIPE--------ELQSIIVSTDMTGLPGEITLEEL-EAQVRVLNLCKIDDEIDRHM---- 567

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + IA    + +     +    +  + ++  +++ +EA+ +
Sbjct: 568 QAIADARRRNDQTAILLETQAI--LQLRQLKLQEEEAVSD 605


>gi|299535818|ref|ZP_07049139.1| DNA primase [Lysinibacillus fusiformis ZC1]
 gi|298729018|gb|EFI69572.1| DNA primase [Lysinibacillus fusiformis ZC1]
          Length = 610

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 143/636 (22%), Positives = 273/636 (42%), Gaps = 39/636 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+ +     I ++I +Y+   +R  N     ++  CPFH E+TPSF  +  K  
Sbjct: 8   KIPEEVIEQIRTQSDIVDVISEYMQLTKRGRN-----WFGLCPFHGEQTPSFSVSTDKQI 62

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   G+ ++F+  + G SF ++V +L    G+ L   P      +K  K    + 
Sbjct: 63  FHCFGCGAGGNAITFVMDIEGISFPDAVVKLGERVGIHLDVEPSFPGGTKKISKADERMK 122

Query: 119 RLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
                A DFFHH  L     +    YL ERG     IE   +G++  S  +L   L +KG
Sbjct: 123 EAHAFAADFFHHLLLNTEDGEEPLNYLLERGFTRELIESNNIGWSLPSFDALTILLERKG 182

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNS 236
           ++ ++I E+GL+I  +     +DRFR R++FPIR   G++IAF GR LS   E  KYLNS
Sbjct: 183 YNLQEIAESGLIIKREGEERYFDRFRGRIMFPIRDENGKIIAFSGRILSSNGEEAKYLNS 242

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ +F K + LYN   A   ++K          +  ++L+EG+MDVL+    GV NVV+
Sbjct: 243 PESPIFQKSEVLYNLDKARTSIRK----------NRQVVLMEGFMDVLAANSVGVMNVVA 292

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT+LT   +  L +L  +I +C+DGD+ G  AA +A  L         +V+  +L   
Sbjct: 293 TMGTSLTNQHITKLKRLVEQITICYDGDNAGFDAAKRAAQL---LHTERMKVDIAVLPEK 349

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPD +I   G   F++ ++ +    +  +      N++F   ++  +    +   +   
Sbjct: 350 LDPDEYIHTLGGQVFKEQILEKPHAYIAFMMMHARRNKNFQFENDTLQYIQEVLEHLVGR 409

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                R  Y + + +      +    +         ++A+    + P+Q        + K
Sbjct: 410 SSPVERDLYIRQLSNETNISEEAIYAQFRKLEANQVRSAKV---EMPTQIPSMPVTQQQK 466

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E  LL  ++++  ++    +      +  +    ++  L   + E  +   +
Sbjct: 467 PMDAAERAERLLLAHMLHNIDVVDRVLRSEQKEPFVRDAYMAVFVRLVGFYEEYGHPDYQ 526

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
              + L +    +++           + +A  E +          ++    +   + ++ 
Sbjct: 527 RFVEILDDAELRKIV-----------MEAALVERDPDQAEAEVMDSIR-QLQKHRIEQEI 574

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            +   +  +     E  +   +   +  +   +  I
Sbjct: 575 YQKMHESKEAEKMHEYARALEIAQQIIHLRKSLSAI 610


>gi|317125238|ref|YP_004099350.1| DNA primase [Intrasporangium calvum DSM 43043]
 gi|315589326|gb|ADU48623.1| DNA primase [Intrasporangium calvum DSM 43043]
          Length = 655

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 149/676 (22%), Positives = 264/676 (39%), Gaps = 65/676 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I  +     I +++ ++V           G     CPFHDEKTPSF    + G 
Sbjct: 4   RINPDDIATVKSRSSIEDVVREHVTLRPAG----PGSLKGLCPFHDEKTPSFTIRPAVGA 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118
           ++CF C   GD +SF+  +   +F E+V+RLA    + L   D     +E+    ++ L+
Sbjct: 60  WHCFGCGEGGDVISFIQKVDHLTFSEAVERLAQRLSMELRYEDGGSRPREEGLGRRSRLL 119

Query: 119 RLIEVATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
               V  +++   L   +  R    +L  R  +S  +  F +G+AP     L  HLR KG
Sbjct: 120 EAHRVTEEYYTERLLGDQGARLARDFLRARDFNSSHVRHFGVGFAPRGGEELVRHLRGKG 179

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235
           F++++++  GL   G  S   YDRFR RL++PIR   G  I FG R +   + +  KYLN
Sbjct: 180 FTDDELVIGGLA--GRGSRGLYDRFRGRLVWPIRDITGSTIGFGARRIFDDDRIEAKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           + ET ++ K   LY    A   +                ++VEGY DV++   AGV+  V
Sbjct: 238 TSETPIYKKSTVLYGLDLAKKRIA----------QDRQAVVVEGYTDVMACHLAGVETAV 287

Query: 296 SSLGTALTEYQLRLLWKLSP--------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           ++ GTA     ++LL ++          +++  FDGD  G +AA +A           ++
Sbjct: 288 ATCGTAFGAEHIKLLRRIMRDEADLAPAKVIFTFDGDAAGQKAAMRAFADDAKWT---SQ 344

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
               +   G+DP    +  G  A + LI +++P+ +   +   +     T + R +    
Sbjct: 345 SFVAVEKSGKDPCELRQAGGDPAVQALIEDAVPMFEFAVRTTIKRFDLGTAEGRVQASRA 404

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------- 460
           +   I  I+D+ LR  Y++ +   L    ++   E +  GR      R   +        
Sbjct: 405 VAPIIGSIRDRSLRPEYTREVAGVLGLEVEQVAAEVARAGRLQVDADRADGRSVNRPSAP 464

Query: 461 --------------GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE-QYQEL 505
                          P        L          L E  LL  L+  P +L+      L
Sbjct: 465 GAGSARAAGGFDDVEPGADEAAGLLPVPDRRDPVVLAERQLLQVLLQFPTLLRPGAIDLL 524

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER---GFGELLKQLDRQVRDAGL 562
           +   +     + ++  +       +          + E        L+ +L        +
Sbjct: 525 SPDAFSAPAHRAVFDGIRIAGGSGERPSLGSWVSTVTEAAPTAVAPLISELAVATLPTRM 584

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--KTAILISI 620
                +A        Y + L    R   L+R+  +   ++ ++      +  ++  L   
Sbjct: 585 -----DATTGLPTARYVEELFNRVRTVELTRRVADAMSEMRRLDHAAAPDPHRSRSLAVK 639

Query: 621 LHEVHIQIHQIESQEA 636
           L E+  Q+  I+   A
Sbjct: 640 LQELQRQLATIKEGMA 655


>gi|22127410|ref|NP_670833.1| DNA primase [Yersinia pestis KIM 10]
 gi|45442722|ref|NP_994261.1| DNA primase [Yersinia pestis biovar Microtus str. 91001]
 gi|51597715|ref|YP_071906.1| DNA primase [Yersinia pseudotuberculosis IP 32953]
 gi|108809137|ref|YP_653053.1| DNA primase [Yersinia pestis Antiqua]
 gi|108810669|ref|YP_646436.1| DNA primase [Yersinia pestis Nepal516]
 gi|145597738|ref|YP_001161814.1| DNA primase [Yersinia pestis Pestoides F]
 gi|150260324|ref|ZP_01917052.1| DNA primase [Yersinia pestis CA88-4125]
 gi|153949220|ref|YP_001399547.1| DNA primase [Yersinia pseudotuberculosis IP 31758]
 gi|162421855|ref|YP_001604919.1| DNA primase [Yersinia pestis Angola]
 gi|165925043|ref|ZP_02220875.1| DNA primase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937795|ref|ZP_02226356.1| DNA primase [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008682|ref|ZP_02229580.1| DNA primase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211888|ref|ZP_02237923.1| DNA primase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167398969|ref|ZP_02304493.1| DNA primase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167419153|ref|ZP_02310906.1| DNA primase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167425189|ref|ZP_02316942.1| DNA primase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|170022886|ref|YP_001719391.1| DNA primase [Yersinia pseudotuberculosis YPIII]
 gi|186896859|ref|YP_001873971.1| DNA primase [Yersinia pseudotuberculosis PB1/+]
 gi|218927837|ref|YP_002345712.1| DNA primase [Yersinia pestis CO92]
 gi|229837322|ref|ZP_04457485.1| DNA primase [Yersinia pestis Pestoides A]
 gi|229840534|ref|ZP_04460693.1| DNA primase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842918|ref|ZP_04463069.1| DNA primase [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900862|ref|ZP_04515986.1| DNA primase [Yersinia pestis Nepal516]
 gi|270487762|ref|ZP_06204836.1| DNA primase [Yersinia pestis KIM D27]
 gi|21960499|gb|AAM87084.1|AE013956_9 DNA primase [Yersinia pestis KIM 10]
 gi|45437588|gb|AAS63138.1| DNA primase [Yersinia pestis biovar Microtus str. 91001]
 gi|51590997|emb|CAH22655.1| DNA primase [Yersinia pseudotuberculosis IP 32953]
 gi|108774317|gb|ABG16836.1| DNA primase [Yersinia pestis Nepal516]
 gi|108781050|gb|ABG15108.1| DNA primase [Yersinia pestis Antiqua]
 gi|115346448|emb|CAL19321.1| DNA primase [Yersinia pestis CO92]
 gi|145209434|gb|ABP38841.1| DNA primase [Yersinia pestis Pestoides F]
 gi|149289732|gb|EDM39809.1| DNA primase [Yersinia pestis CA88-4125]
 gi|152960715|gb|ABS48176.1| DNA primase [Yersinia pseudotuberculosis IP 31758]
 gi|162354670|gb|ABX88618.1| DNA primase [Yersinia pestis Angola]
 gi|165914207|gb|EDR32823.1| DNA primase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165923243|gb|EDR40394.1| DNA primase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992021|gb|EDR44322.1| DNA primase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206634|gb|EDR51114.1| DNA primase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166963147|gb|EDR59168.1| DNA primase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167051473|gb|EDR62881.1| DNA primase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167055952|gb|EDR65733.1| DNA primase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169749420|gb|ACA66938.1| DNA primase [Yersinia pseudotuberculosis YPIII]
 gi|186699885|gb|ACC90514.1| DNA primase [Yersinia pseudotuberculosis PB1/+]
 gi|229682201|gb|EEO78293.1| DNA primase [Yersinia pestis Nepal516]
 gi|229689984|gb|EEO82042.1| DNA primase [Yersinia pestis biovar Orientalis str. India 195]
 gi|229696900|gb|EEO86947.1| DNA primase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229705445|gb|EEO91455.1| DNA primase [Yersinia pestis Pestoides A]
 gi|270336266|gb|EFA47043.1| DNA primase [Yersinia pestis KIM D27]
 gi|320016797|gb|ADW00369.1| DNA primase [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 582

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 175/598 (29%), Positives = 283/598 (47%), Gaps = 46/598 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIIDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGSGTTQIERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+  SLK    K+   YL  RG+    I+ F +G+AP    +  +   + G S
Sbjct: 119 LMESLSAFYQQSLKGQNAKQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGES 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  +++  +YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RTALNDAGMLV-TNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A           V   + + +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEA----------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T   ++LL++ +  ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ +  + PL   L++        ++PD RA+L       I+ +  + 
Sbjct: 347 DTLVRKEGKDAFEQRMEAAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGEA 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +            +    K  +                
Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQIDNANTYQPPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       Q L   +        L+  L    + Q      ++
Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGLEQAKLAGLP---LFIELVETCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +  F + L+ L     +  +     E   VD       ++   ++  L++R +
Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDMVEPTFVDTLASLYDSILEQRQETLIARDR 559


>gi|148543973|ref|YP_001271343.1| DNA primase [Lactobacillus reuteri DSM 20016]
 gi|184153368|ref|YP_001841709.1| DNA primase DnaG [Lactobacillus reuteri JCM 1112]
 gi|227364886|ref|ZP_03848932.1| DNA primase [Lactobacillus reuteri MM2-3]
 gi|325682489|ref|ZP_08162006.1| DNA primase [Lactobacillus reuteri MM4-1A]
 gi|148531007|gb|ABQ83006.1| DNA primase [Lactobacillus reuteri DSM 20016]
 gi|183224712|dbj|BAG25229.1| DNA primase DnaG [Lactobacillus reuteri JCM 1112]
 gi|227070090|gb|EEI08467.1| DNA primase [Lactobacillus reuteri MM2-3]
 gi|324978328|gb|EGC15278.1| DNA primase [Lactobacillus reuteri MM4-1A]
          Length = 621

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 160/646 (24%), Positives = 279/646 (43%), Gaps = 41/646 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR+ I ++   + I ++IG+YV   +   N         CPFHDEKTPSF  N+ K F
Sbjct: 3   KIPRNVIDEIRNSVDIGDVIGRYVQLHQAGKNL-----IGLCPFHDEKTPSFSVNEEKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           +YCF CH  G+   FL  L    F+++V+ +A  + + +P        +        L  
Sbjct: 58  FYCFGCHRSGNVFQFLMELKHIDFVDAVKEIANDSNIKIPEQYVSVPAKPSNNENRQLFD 117

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L + A   +HH L      +    YL +RG+    IE F LGYAPD R  L+   +Q+  
Sbjct: 118 LHDKAAKLYHHILVNTPAGQVALNYLKKRGMSEELIEQFGLGYAPDQR-ILKPFFQQQKV 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLNS 236
             + + ++GL  +        DRF  R+++PI++ +GQVIAF GR +   ++   KYLNS
Sbjct: 177 DYQLLRKSGLFSEDQQG-ELRDRFIERIMYPIKNGQGQVIAFSGRLIDTSKTNLPKYLNS 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F+K + L+NF  A    +K  R          + L EG+MDV+S   AG++N ++
Sbjct: 236 PETPIFNKRRTLFNFDVARKAARKDGR----------LYLFEGFMDVISAFAAGIENGIA 285

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S+GT+ TE Q+ ++ + + ++ +C+DGD PG  A  +AI LV  H     +V  V L  G
Sbjct: 286 SMGTSFTEEQVAIIGRATKQLDICYDGDQPGQNAIDRAISLVNDHRPNQLQVKVVQLPAG 345

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPD +++ YG   F   L  +     +   +     ++ +  +E  +        I  +
Sbjct: 346 IDPDEYVQKYGPQQFNAYLTNKEETTTEFYLRFLRNGKNLDNQNELMQYLNQALKVIAQV 405

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ------RLMQS 469
           +       Y Q +        Q   T+     +    + +   ++ PS       +    
Sbjct: 406 QAPLEEDMYLQRLASEFNLDRQTLKTQLDQLRQQLGIHNQPWTKQQPSLVRHQQFQQTSE 465

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              +     +  L E  LL  ++    +      +  D  + + + Q L+    S F E 
Sbjct: 466 EEHRKVKLSRTELAEQILLRYMLYDREVWMHVTSD-HDFHFAHEKYQTLYLLAASYFSEN 524

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
             +   +    L E      L Q++    D  +             +     + +     
Sbjct: 525 GSYSTADFLDYLDESSLQGTLGQIENLNVDQEVDM-----------RAIDDCIHMIAEQT 573

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            L+ Q  + + Q+ +  +    E    L   L ++  Q  +++++E
Sbjct: 574 PLAAQIADKQAQLKEANSLHNTELATQLTIELVKLLKQQQRLKTEE 619


>gi|319651586|ref|ZP_08005713.1| DNA primase [Bacillus sp. 2_A_57_CT2]
 gi|317396653|gb|EFV77364.1| DNA primase [Bacillus sp. 2_A_57_CT2]
          Length = 605

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 154/633 (24%), Positives = 274/633 (43%), Gaps = 37/633 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + + ++   + I ++IG Y+  +++  N     Y+  CPFH E TPSF  +  K  
Sbjct: 4   RIAEEKVNEIRQAVDIVDVIGDYIQLNKQGRN-----YFGLCPFHGENTPSFSVSPEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118
           Y+CF C   G+  SFL  L G SF E+  +LA    V L +        +        ++
Sbjct: 59  YHCFGCGAGGNAFSFLMELEGYSFQEAALKLAEKGNVKLEIDAASAASAKSMPVDLQQMM 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              E+   F+HH L      +    YL  RG    +IE F++GY+  S   + + L ++ 
Sbjct: 119 EAHELLRKFYHHLLVNTKDGQHALEYLLNRGFTMESIEKFQIGYSLKSWDFVFKFLTKRK 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           F  + +  AGL+I  +     +DRFR+R++FPI    G  IAF GR+L   +  KYLNSP
Sbjct: 179 FPADVMERAGLIIKREKDGNYFDRFRDRIMFPIFDRSGNTIAFSGRSL-GDDEPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET++F+K K LYNF  A   ++K  R           +L EG+ DV++  +AGV N V +
Sbjct: 238 ETVIFNKSKTLYNFHLARPQIKKLQRA----------VLFEGFADVIAADRAGVGNGVGT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE  +  L +    I +C+D D+ G+ AAY+A +L    +  G ++   L+  G 
Sbjct: 288 MGTALTEEHVASLRRNVQSITICYDSDNAGIEAAYRAANL---LMEAGCQIRVALMPDGY 344

Query: 358 DPDSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD +I  +G+  F   +I  S+  +          +      +R      +   I+ + 
Sbjct: 345 DPDDYINEFGEEKFRHDVIESSITFMAFKMLYLRRGKRLQNEGDRLLYIEEVLKEISQLD 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSG-YGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               R +Y + + +      +    +    Y    ++N          Q+ +Q+      
Sbjct: 405 KAVERDHYLRQLANEFSLSLEALKEQQKQVYYTEKRRNTHKGKGAFEPQKRLQTPKRADS 464

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           L       E  L+  ++ +  I  +    L    ++ +E Q + ++L   + +     P 
Sbjct: 465 LKPAYHTAERRLIAHMLRNSDIAFKVQDMLQGNTFNIDEHQAIITYLLGFYEKGHTPDPS 524

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                + +        +L R V D  + S   E +  ++    +Q L   K       + 
Sbjct: 525 AFINFIKDE-------KLKRIVVDIEMMSINDEISEQELSDYLKQVLNYQKML-----KI 572

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +E   +  +   + +  K A++   +  +   +
Sbjct: 573 KEKLNEEKEAERQKDYAKAALIAMEILHLRKSL 605


>gi|258516190|ref|YP_003192412.1| DNA primase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779895|gb|ACV63789.1| DNA primase [Desulfotomaculum acetoxidans DSM 771]
          Length = 599

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 171/629 (27%), Positives = 299/629 (47%), Gaps = 38/629 (6%)

Query: 1   MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M    P++ I+++ +   I  +I +YV   R+  N     Y   CPFH EKT SF  N  
Sbjct: 1   MRGVIPQEIIEEVRVRSDIVQVISEYVPLKRKGKN-----YIGYCPFHQEKTASFSVNRE 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDL 117
           K  ++CF CH  GD   FL      SF E+V++LA    + LP  +DPK   +++ +   
Sbjct: 56  KQIFHCFGCHTGGDIFRFLMLQEAISFPEAVRKLAQTLNIDLPVELDPKSLDEKRKRQAA 115

Query: 118 IRLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             + ++A +F+++  L +   +    YL +RGI     + F+LGYAP    SL  +L++K
Sbjct: 116 WEINDLAKNFYNYVLLNHKIAQPARDYLVKRGISHDIAQSFELGYAPPRWDSLALYLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              + + +    L   + S   YDRFR+RLIFPI +  G+ I FGGR L + ++ KYLNS
Sbjct: 176 HGIDYEKMLELGLCAVNKSGRRYDRFRHRLIFPIINETGKTIGFGGRALDETDNPKYLNS 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET  F+KG+ LY    A   ++             F I++EGYMDV++   AG++N V+
Sbjct: 236 PETKYFNKGQTLYGLHLARQGIR----------EKGFAIVMEGYMDVVTAHFAGIKNAVA 285

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+LT  Q +LL + +  ++L +D D  G++A  +A+D+       G  V  V +  G
Sbjct: 286 SLGTSLTLEQGKLLMRYTTDVILAYDSDQAGIKATLRALDI---LQKLGFNVRVVTVPDG 342

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKR-ETENRSFNTPDERAELEIHLKNCINHI 415
           +DPD FIR  G  AFE LI ++L LV+    + E       +  ++      +   +N++
Sbjct: 343 KDPDGFIRMAGTGAFENLIEKALDLVEYKLWQFENSVGHNLSFADKMNAVQTILPNLNYM 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                R   ++     L+  ++   ++   Y +  +KN + R     +     + +  G+
Sbjct: 403 YSAVEREEAAKKAASLLKISWEAIYSDFLRYKKNTEKNQQTRTNYDKNVNNKHNLINHGQ 462

Query: 476 LS-KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                    E  LL+  + +P+ ++   + L ++ + N E QK++  L  +  +   +  
Sbjct: 463 NKMDAVEKAEQGLLILALENPSWVETIKKGLGEVFFSNKEYQKIFDLLLRESTKN-DYQA 521

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L +R    L   L +++    L    ++  I   R  Y++   L          
Sbjct: 522 SCLFSFLDDREQNILSYLLSKKIPGDNLVQIISDFIITVKRSIYKEQHEL---------- 571

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHE 623
              + K++A+     + E  + ++  L +
Sbjct: 572 ---LLKKLAEAEKNNDRESLSQILQELQK 597


>gi|104774140|ref|YP_619120.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103423221|emb|CAI98049.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 612

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 153/640 (23%), Positives = 284/640 (44%), Gaps = 40/640 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               DFI ++   + I ++I QYV  ++R       DY   CPFH EKTPSF  N  K F
Sbjct: 4   RISEDFINEVRGSVNIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFSVNPDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           +YCF CH  G+   F+      +F ESV+R+A  A +P+P    + + K      L+++ 
Sbjct: 59  FYCFGCHKGGNVYKFIMEKEEVTFPESVERVAEFANIPMPQEYQEQQVKLNP---LMQMH 115

Query: 122 EVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A DF+   L      +R   Y  +RG+D   ++ FK+GYAP     L  +LR +G+++
Sbjct: 116 KEAADFYQQVLMTTKIGERGLEYARKRGLDDDLLKHFKIGYAPGKSDLLLTYLRGEGYTD 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239
            ++ E+GL +   +    +DRFR+RL+FP+    G ++AF GR +S   E  KYLNSPET
Sbjct: 176 NQLAESGLFVKSQDG-RLFDRFRDRLMFPMSDESGHLVAFSGRRISDDPEEPKYLNSPET 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K   L++F  A  + +K             ++L EG+MDV+S  +AGV+  ++S+G
Sbjct: 235 SIFNKSDLLFHFSEAKKHARK----------EGHLVLFEGHMDVISAYKAGVKTGIASMG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ ++ +++ ++V+ +DGDDPG  A  +A+ L          +  V+L    DP
Sbjct: 285 TSLTQQQVYMIRRITKQVVINYDGDDPGQHATERAVGLFKQAGNFDLGI--VILPDKLDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG  +++  I  ++   D   +R  +  + N   E+          I  + +  
Sbjct: 343 DEYVKQYGPDSYQAAIRGAISTTDFSLQRLKKKYNINNEREQVAYLSEAVAEIAALPNPV 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y   +               S   R  ++  +H   +   +    +     +   +
Sbjct: 403 EQELYVGRLAKETGVSLDALKVNLSRARRKQRRVDQHTSSEVLPELAPLAPAADPQPVTR 462

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               +  LL   I            +    + N E ++L     +     +         
Sbjct: 463 ALKAQQRLLYAYIYSDEARDYLI--VNGFVFPNPEYERLAKLWLNYIETHENVSLSGFLD 520

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            + E        +L   +    +     E  + ++ +   + L L K    + R      
Sbjct: 521 FIPE--------ELQSIIVSTDMTGLPGEITLEEL-EAQVRVLNLCKIDDEIDRHM---- 567

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + IA    + +     +    +  + ++  +++ +EA+ +
Sbjct: 568 QAIADARRRNDQTAILLETQAI--LQLRQLKLQEEEAVSD 605


>gi|116514230|ref|YP_813136.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093545|gb|ABJ58698.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 612

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 153/640 (23%), Positives = 283/640 (44%), Gaps = 40/640 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               DFI ++   + I ++I QYV  ++R       DY   CPFH EKTPSF  N  K F
Sbjct: 4   RISEDFINEVRGSVNIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFSVNPDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           +YCF CH  G+   F+      +F ESV+R+A  A +P+P    +   K      L+++ 
Sbjct: 59  FYCFGCHKGGNVYKFIMEKEEVTFPESVERVAEFANIPMPQEYQEQPVKLNP---LMQMH 115

Query: 122 EVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A DF+   L      +R   Y  +RG+D   ++ FK+GYAP     L  +LR +G+++
Sbjct: 116 KEAADFYQQVLMTTKIGERGLEYARKRGLDDDLLKHFKIGYAPGKSDLLLTYLRGEGYTD 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239
            ++ E+GL +   +    +DRFR+RL+FP+    G ++AF GR +S   E  KYLNSPET
Sbjct: 176 NQLAESGLFVKSQDG-RLFDRFRDRLMFPMSDESGHLVAFSGRRISDDPEEPKYLNSPET 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K   L++F  A  + +K             ++L EG+MDV+S  +AGV+  ++S+G
Sbjct: 235 SIFNKSDLLFHFSEAKKHARK----------EGHLVLFEGHMDVISAYKAGVKTGIASMG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ ++ +++ ++V+ +DGDDPG  A  +A+ L          +  V+L    DP
Sbjct: 285 TSLTQQQVYMIRRITKQVVINYDGDDPGQHATERAVGLFKQAGNFDLGI--VILPDKLDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG  +++  I  ++   D   +R  +  + N   E+          I  + +  
Sbjct: 343 DEYVKQYGPDSYQAAIRGAISTTDFFLQRLKKKYNINNEREQVAYLSEAVAEIAALPNPV 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y   +               S   R  ++  +H   +   +    +     +   +
Sbjct: 403 EQELYVGRLAKETGVSLDALKVNLSRARRKQRRVDQHTSSEVLPELAPLAPAADPQPVTR 462

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               +  LL   I            +    + N E ++L     +     +         
Sbjct: 463 ALKAQQRLLYAYIYSDEARDYLI--VNGFVFPNPEYERLAKLWLNYIETHENVSLSGFLD 520

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            + E        +L   +    +     E  + ++ +   + L L K    + R      
Sbjct: 521 FIPE--------ELQSIIVSTDMTGLPGEITLEEL-EAQVRVLNLCKIDDEIDRHM---- 567

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + IA    + +     +    +  + ++  +++ +EA+ +
Sbjct: 568 QAIADARRRNDQTAILLETQAI--LQLRQLKLQEEEAVSD 605


>gi|193215935|ref|YP_001997134.1| DNA primase [Chloroherpeton thalassium ATCC 35110]
 gi|193089412|gb|ACF14687.1| DNA primase [Chloroherpeton thalassium ATCC 35110]
          Length = 642

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 158/655 (24%), Positives = 269/655 (41%), Gaps = 40/655 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P + I ++  ++ I +++  YV   R  +N     + A  PF  EKTPSF  +  K 
Sbjct: 1   MRIPEEKIDEIRRNLDIVDVVSDYVQLRRAGSN-----FKALSPFTSEKTPSFIVSPEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDL 117
            Y CFS    G+  +F+  +    FI++V+ LA  AGV L       P          + 
Sbjct: 56  IYKCFSTGKGGNVFTFVMEMEKIGFIDAVKMLAPRAGVSLAEFERHSPDAAAPSDPNEEY 115

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              +  +  FFH ++     K  + Y  ERGI    I  F LGYA D    L    ++ G
Sbjct: 116 YNTLTWSAKFFHSAMNLPEGKTCYDYFRERGILPETISAFGLGYAFDDWDKLHHAAQKDG 175

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNS 236
            S E + E GL+   +     YD FR R +FPI S  G+V+ FGGR L+ + ++ KY+NS
Sbjct: 176 ISSEILSELGLIKYTEKGQKYYDAFRARAMFPIFSPGGKVVGFGGRILTGQKDAPKYINS 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ ++ K K L+    A + +++              ILVEGYMDV+SL Q G++N V+
Sbjct: 236 PESKIYEKSKILFAMNFAKDEIRR----------REEAILVEGYMDVISLHQVGIKNAVA 285

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S GT+LT  Q RLL + +  I+  +DGD  G++A  + ID+    +  G   + + L  G
Sbjct: 286 SSGTSLTTEQARLLKRYTKNILFIYDGDAAGIKAMMRGIDV---LIEEGLHASVLTLPDG 342

Query: 357 EDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDSF+R  GK  F   I       +D   +    +  F +P+   E    L   ++ +
Sbjct: 343 NDPDSFVREEGKDTFLSFIKAHRSSFLDFKLQVLENDGGFESPEATTESIRALLESLSKL 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG----PSQRLMQSSL 471
            D+     Y + +  +L         E        +K +R               +    
Sbjct: 403 PDELALEMYLKELSQKLDVGLSTVQKELGKIQNRRRKPSRQPMPSSYPVEAFPEPLPLPE 462

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFV 527
                 +  S+ E   L   +          + +        + ++  + +  F+ + + 
Sbjct: 463 QAPPDEEIVSVAERTFLKAFLESTYHGFTVLEFVDSHKEIFNFRHDWTRLIVDFMLARYE 522

Query: 528 EQ------KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
                   + F        L +      +  L      +  W   T++  +  R+     
Sbjct: 523 HAKAADSLQNFDLPNELNYLDDEAARNFISSLLVDESVSEKWP--TDSPSMYARRCLSAF 580

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           L    +  +LSR  E+    + ++    +  K   ++  L+ +  +  Q +   A
Sbjct: 581 LDATGKL-ILSRYTEQRHAAMQEMEQTADPAKQEEILHRLNSLRKEELQAKKNFA 634


>gi|300812199|ref|ZP_07092641.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496835|gb|EFK31915.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 612

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 153/640 (23%), Positives = 282/640 (44%), Gaps = 40/640 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               DFI ++   + I ++I QYV  ++R       DY   CPFH EKTPSF  N  K F
Sbjct: 4   RISEDFINEVRGSVNIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFSVNPDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           +YCF CH  G+   F+      +F ESV+R+A  A +P+P    +   K      L+++ 
Sbjct: 59  FYCFGCHKGGNVYKFIMEKEEVTFPESVERVAEFANIPMPQEYQEQPVKLNP---LMQMH 115

Query: 122 EVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A DF+   L      +R   Y  +RG+D   +  FK+GYAP     L  +LR +G+++
Sbjct: 116 KEAADFYQQVLMTTKIGERGLEYARKRGLDDDLLRHFKIGYAPGKSDLLLTYLRGEGYTD 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239
           +++ E+GL +   +    +DRFR+RL+FP+    G  +AF GR +S   E  KYLNSPET
Sbjct: 176 DQLAESGLFVKSQDG-RLFDRFRDRLMFPMSDESGHPVAFSGRRISDDPEEPKYLNSPET 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K   L++F  A  + +K             ++L EG+MDV+S  +AGV+  ++S+G
Sbjct: 235 SIFNKSDLLFHFSEAKKHARK----------EGHLVLFEGHMDVISAYKAGVKTGIASMG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ ++ +++ ++V+ +DGDDPG  A  +A+ L          +  V+L    DP
Sbjct: 285 TSLTQQQVYMIRRITKQVVINYDGDDPGQHATERAVGLFKQAGNFDLGI--VILPDKLDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG  +++  I  ++   D   +R  +  + N   E+          I  + +  
Sbjct: 343 DEYVKQYGPDSYQAAIRGAISTTDFFLQRLKKKYNLNNEREQVAYLSEAVAEIAALPNPV 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y   +               S   R  ++  +H   +   +    +     +   +
Sbjct: 403 EQDLYVGRLAKETGVSLDALKVNLSRARRKQRRVDQHTSSEVLPELAPLAPAADPQPVTR 462

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               +  LL   I            +    + N E ++L     +     +         
Sbjct: 463 ALKAQQRLLYAYIYSDEARDYL--TVNGFVFPNPEYERLAKLWLNYIETHENVSLSGFLD 520

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            + E        +L   +    +     E  + ++ +   + L L K    + R      
Sbjct: 521 FIPE--------ELQSIIVSTDMTGLPGEITLEEL-EAQVRVLNLCKIDDEIDRHM---- 567

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + IA    + +     +    +  + ++  +++ +EA+ +
Sbjct: 568 QAIADARRRNDQTAILLETQAI--LQLRQLKLQEEEAVSD 605


>gi|227510292|ref|ZP_03940341.1| DNA primase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227189944|gb|EEI70011.1| DNA primase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 605

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 153/639 (23%), Positives = 282/639 (44%), Gaps = 41/639 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P D I+ +   + I +++ QYV   +   N      +  CPFH+E+TPSF  ++ K 
Sbjct: 1   MKIPEDVIEQVRSQVNIVDVVSQYVQLKQSGKNL-----FGLCPFHEERTPSFSVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTD 116
            ++CFSC   G+   F+  +   SF E+V+++A +  + +            ++   Q  
Sbjct: 56  IFHCFSCGRGGNVFKFMMEIENLSFPEAVKKVAEMEHLDVDSKYFTDAAPASRETSEQKQ 115

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           LI L E A   +HH L      K    YL  RG++   I++++LGYAP  R  L+    +
Sbjct: 116 LIELHEQAVKLYHHILINTKMGKSALDYLHHRGVNDETIDLYQLGYAPQQR-LLKPFFDE 174

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYL 234
           +    + + ++GL  +  +     DRF +R+++PIR++ GQ +AF GR L+K  +  KYL
Sbjct: 175 RQADYQLLRKSGLFSETQDG-KLRDRFVDRVMYPIRNATGQTVAFSGRLLAKDSDMPKYL 233

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET LF+K K L+N   A   ++          S    +L EG+MDV+S  Q G+++ 
Sbjct: 234 NSPETELFNKRKILFNLDLARPNIR----------SKQPALLFEGFMDVISAYQGGIKSG 283

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           ++S+GT+LTE Q+  + +++  +++C+DGD PG +A  +AID           +  V + 
Sbjct: 284 IASMGTSLTEQQIYDIQRITREVIVCYDGDAPGQKAIKRAID-AFKQTDHQLDLKVVSIP 342

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G DPD FIR  G   F+ L+  +   VD       +  +  T + +A         I+ 
Sbjct: 343 DGMDPDEFIRNRGADKFQTLLQHAQSPVDFDLNYLKQEANLKTEEGQAAYISEALKLIST 402

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I     R  Y   + D      Q    +     R       +           Q      
Sbjct: 403 ISSGISRDLYLNRLADSFSIDKQVLKQQLQPLIRKTVTKRANHQIPA-----GQPVNQSP 457

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +   K ++ +  LL  ++++  +  +    ++   + + + Q L+      F +   +  
Sbjct: 458 QKRDKVTVAQMQLLNRMLHNHDVWVKVSG-ISGFSFVDEQYQMLYLLAEGYFSKFDQYNV 516

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                 + E     LL  +D       + +   E + +++       L +      +  +
Sbjct: 517 ATFSNLITEDSLQSLLIDID-------MMNLPEEPSPMEIDND----LDVIMNRAPVETK 565

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            ++ + ++ Q +  G+ +K   L+  L ++  Q    E 
Sbjct: 566 IKKKQAELRQASKIGDVDKQRQLMVDLLKLEQQKRTKEQ 604


>gi|271499151|ref|YP_003332176.1| DNA primase [Dickeya dadantii Ech586]
 gi|270342706|gb|ACZ75471.1| DNA primase [Dickeya dadantii Ech586]
          Length = 584

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 174/629 (27%), Positives = 284/629 (45%), Gaps = 52/629 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LAA+ G+ +P        + +   +  L  
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVESIEELAAMHGLDVPYEAGTGPTQLERHQRQSLYE 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+ H+L          YL  RG+    I  F +G       +  +   +    
Sbjct: 119 LMEQLSAFYQHTLNQPAGTPAREYLARRGLSDDIIRQFAIGCTLPGWDNALKRFGRNSDD 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  + +AG+L+  + +  +YDRFR+R++FPIR  RG+VIAFGGR +    + KYLNSPET
Sbjct: 179 KTTLTDAGMLV-TNENGRTYDRFRDRVMFPIRDKRGRVIAFGGRVM-GDGTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEAQQKNPELKR----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATDQVVCCYDGDRAGRDAAWRALETALPYLDDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ I +++PL   L+    +    +TPD RA+L       I+ +  + 
Sbjct: 347 DTLVRQEGKAAFEQRIEQAMPLSSFLFDSLLQQVDMSTPDGRAKLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q +  +L  L    +            + +    K  +                
Sbjct: 407 LRLYLRQQLGHKLGLLDDSQLDRLLPKTAEQTLSYQPPRLKVTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                  L+  L+ +P +  E     L  +        +L+  L     E        + 
Sbjct: 452 -----RILIGLLVQNPRLSAEVPTLALDGVEESKVAGLELFLDLVKACNESPGMNMGLLL 506

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++  E  + + L+ L              E   V + + Y Q          L ++ + +
Sbjct: 507 EKYRESKYRKQLETLASWDHMIED-DELEEKFRVSLAELYDQL---------LQQRMDTL 556

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             +  + T      +   L S+   +  +
Sbjct: 557 IAR--ERTHGLSMNERKELWSLQLALTRK 583


>gi|227513299|ref|ZP_03943348.1| DNA primase [Lactobacillus buchneri ATCC 11577]
 gi|227083500|gb|EEI18812.1| DNA primase [Lactobacillus buchneri ATCC 11577]
          Length = 605

 Score =  366 bits (939), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 152/639 (23%), Positives = 281/639 (43%), Gaps = 41/639 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P D I+ +   + I +++ QYV   +   N      +  CPFH+E+TPSF  ++ K 
Sbjct: 1   MKIPEDVIEQVRSQVNIVDVVSQYVQLKQSGKNL-----FGLCPFHEERTPSFSVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTD 116
            ++CFSC   G+   F+  +   SF E+V+++A +  + +            ++   Q  
Sbjct: 56  IFHCFSCGRGGNVFKFMMEIENLSFPEAVKKVAEMEHLDVDSKYFTDAAPASRETSEQKQ 115

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           LI L E A   +HH L      +    YL  RG++   I++++LGYAP  R  L+    +
Sbjct: 116 LIELHEQAVKLYHHILINTKMGESALDYLHHRGVNDETIDLYQLGYAPQQR-LLKPFFDE 174

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYL 234
           +    + + ++GL  +  +     DRF +R+++PIR+  GQ +AF GR L+K  +  KYL
Sbjct: 175 RQADYQLLRKSGLFSETQDG-KLRDRFVDRVMYPIRNGTGQTVAFSGRLLAKDSDMPKYL 233

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET LF+K K L+N   A   ++          S    +L EG+MDV+S  Q G+++ 
Sbjct: 234 NSPETELFNKRKILFNLDLARPNIR----------SKQPALLFEGFMDVISAYQGGIKSG 283

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           ++S+GT+LTE Q+  + +++  +++C+DGD PG +A  +AID           +  V + 
Sbjct: 284 IASMGTSLTEQQIYDIQRITREVIVCYDGDAPGQKAIKRAID-AFKQTDHQLDLKVVSIP 342

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G DPD FIR  G   F+ L+  +   VD       +  +  T + +A         I+ 
Sbjct: 343 DGMDPDEFIRNRGADKFQTLLQHAQSPVDFDLNYLKQEANLKTEEGQAAYISEALKLIST 402

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I     R  Y   + D      Q    +     R       +           Q      
Sbjct: 403 ISSGISRDLYLNRLADSFSIDKQVLKQQLQPLIRKNVTKRANHQIPA-----AQPVNQSP 457

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +   K ++ +  LL  ++++  +  +    ++   + + + Q L+      F +   +  
Sbjct: 458 QKRDKVTVAQMQLLNRMLHNHDVWVKVSG-ISGFSFVDEQYQMLYLLAEGYFSKFDQYNV 516

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                 + E     LL  +D       + +   E + +++       L +      +  +
Sbjct: 517 ATFSNLITEDSLQTLLIDID-------MMNLPEEPSPMEIDND----LDVIMNRAPVETK 565

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            ++ + ++ Q +  G+ +K   L+  L ++  Q    E 
Sbjct: 566 IKKKQAELKQASKIGDVDKQRQLMVDLLKLEQQKRTKEQ 604


>gi|308050978|ref|YP_003914544.1| DNA primase [Ferrimonas balearica DSM 9799]
 gi|307633168|gb|ADN77470.1| DNA primase [Ferrimonas balearica DSM 9799]
          Length = 595

 Score =  366 bits (939), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 168/640 (26%), Positives = 287/640 (44%), Gaps = 70/640 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PRDFI  LL  + I  LI   V   +   N     Y ACCPFH+EKTPSF  +  K F
Sbjct: 4   RIPRDFIDQLLSRLDIVELIDGRVKLKKAGKN-----YHACCPFHNEKTPSFTVSQDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--------- 112
           Y+CF C   G+ + F+       F+++++ LA   G+ +P       +  +         
Sbjct: 59  YHCFGCGAHGNAIDFVMEYDRLEFVDAIEELAGQLGIEVPRESSGTGRTGRGPSGGTSKP 118

Query: 113 ----IQTDLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167
                  D   L+  A  ++   L+ +   +R+  YL +RG+D   ++ F +G+AP    
Sbjct: 119 TPSVKLDDHFALMNWAARYYQQQLRQHPERERVIEYLKQRGLDGETVQRFGIGFAPPGWD 178

Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
           SL    R    +++ + E G+LI+       YDRFR+RL+FPI+  RG+VIAFGGR L  
Sbjct: 179 SLLSQQRSNNQAQKLLAECGMLIEK-EGGKRYDRFRDRLMFPIQDRRGRVIAFGGRVL-G 236

Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
            ++ KYLNSPET +FHKG+ LY  +      +   R          +++VEGYMDV++L 
Sbjct: 237 DDTPKYLNSPETPIFHKGRELYGLYPLRQASRNPER----------VLVVEGYMDVVALA 286

Query: 288 QAGVQNVVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
           Q G+   V+SLGT+ T   +++L    S  +V C+DGD  G  AA++A++  L  L  G 
Sbjct: 287 QHGIDYAVASLGTSTTADHIQVLMRTASKEVVCCYDGDRAGREAAWRALETALPMLKSGK 346

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
            + F+ L  GEDPD+ +R  GK AFE  I +++PL D L+   +++ + ++ + +A    
Sbjct: 347 ALKFMFLPDGEDPDTLVRQEGKEAFEARIEKAMPLSDYLFSHLSQDANMSSDEGKASFIN 406

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            ++  I+ I D+ LR    Q +   L    +++        +  +K  + R         
Sbjct: 407 TIRPLIDQIGDEVLRETLIQRLEKTLGWGARQHFQAPRAVAKPQQKAQQGRGTPI----- 461

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
                                +  L+ +P +  +   ++A +      +  L   L +  
Sbjct: 462 ------------------RRAIALLLQNPRLGYQLDPQVAVLHLPLGGIALLKGMLEACR 503

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                    ++ +R  +      L++L     +              + + +   L  + 
Sbjct: 504 PA--PLTTAQLLERYRDSDDYGTLRKLLSWNMEVE----------EHLDKEFFDCLQ-WL 550

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
             R L    E ++++    +     E+T  L  +L  +  
Sbjct: 551 NQRFLEHLSETLQQKARDGSIT--VEETRKLSDVLTILKR 588


>gi|238750948|ref|ZP_04612445.1| DNA primase [Yersinia rohdei ATCC 43380]
 gi|238710862|gb|EEQ03083.1| DNA primase [Yersinia rohdei ATCC 43380]
          Length = 582

 Score =  366 bits (939), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 174/598 (29%), Positives = 284/598 (47%), Gaps = 46/598 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRIFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQIERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+  SLK+    +   YL  RG+    I+ F +G+AP    +  +   + G S
Sbjct: 119 LMENLSGFYQQSLKSQTANQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGES 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  +++  +YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RTALNDAGMLV-TNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A           V   + + +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEA----------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T   ++LL++ +  ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK  FEK + E+ PL   L++        ++PD RA+L       I+ +  + 
Sbjct: 347 DTLVRKEGKDRFEKRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +          + +    K  +                
Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQAESINSYQPPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       Q +   +        L+  L    + Q      ++
Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVETCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +  F + L+ L     +  +     E   VD       ++   ++  L++R +
Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDMVEQTFVDTLTSLYDSILEQRQETLIARDR 559


>gi|291618942|ref|YP_003521684.1| DnaG [Pantoea ananatis LMG 20103]
 gi|291153972|gb|ADD78556.1| DnaG [Pantoea ananatis LMG 20103]
          Length = 581

 Score =  366 bits (938), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 181/627 (28%), Positives = 289/627 (46%), Gaps = 58/627 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I  LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVELIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA   G+ +P    +   + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATSHGLDVPYEAGNGPSQMERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E    F+  SL+ +  +    YL+ RG+ +  I  F +GYAP    ++ +   ++   
Sbjct: 119 LMENLNGFYQQSLQQSSAQSARDYLEHRGLSADIINHFSIGYAPAGWDNVLKRFGKQPED 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            E ++EAG+L+  D     YDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RESLMEAGVLVSNDKG-RVYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + AL    +  R          +++VEGYMDV++L Q GV   V+SLG
Sbjct: 237 PVFHKGRQLYGLYEALKNHPEPKR----------LLVVEGYMDVVALAQFGVDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRSTDNVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         ++ D +A L       I  I  + 
Sbjct: 347 DTLVRQEGKAAFETRMEQAMPLSSFLFDSLLPQVDLSSRDGKARLSTLALPLITQIPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  QA+ ++L  L    + +        +          P +R              
Sbjct: 407 LRIYMRQALGNKLGILDDSQLEKL----MPKQAPGGSAPVAPPLKRTTM----------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  LI +P +         LA+ +        L+  L +   E       ++
Sbjct: 452 -----RVLVALLIQNPQLATLVPSLDGLAESKIAGLP---LFIELVTRCNENPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +      F + L+ L   V +  +    +EA   D       +         L  +   
Sbjct: 504 LELYRGTNFSQTLETLA--VWNHMIVDEESEAVFQDSLASVYDS--------ALEER--- 550

Query: 598 IEKQIAQVTAKG-EAEKTAILISILHE 623
           +E  IA+    G   ++   L ++   
Sbjct: 551 LEFLIARERTHGLSTDERRELWALSQA 577


>gi|242373867|ref|ZP_04819441.1| DNA primase [Staphylococcus epidermidis M23864:W1]
 gi|242348421|gb|EES40023.1| DNA primase [Staphylococcus epidermidis M23864:W1]
          Length = 598

 Score =  366 bits (938), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 155/625 (24%), Positives = 271/625 (43%), Gaps = 39/625 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSVINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDL 117
             +CF C   G+   F   +    F+E+V+ L     + + + + +  ++ +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDIPFVEAVKELGERVNIQVDIGNTQQNQESQMASDDLKM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +++H++L K    +    YL ERG     I+  ++G+APD+ +   + L +K
Sbjct: 116 IEMHELIQEYYHYALMKTVEGEEALNYLRERGFTDELIKEREIGFAPDNSHFCHDFLEKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K + LYN   A   ++K          +  IIL+EG+MDV+    AG++ VV+
Sbjct: 235 PETPIFQKRRLLYNLDKARKSIRK----------NDEIILLEGFMDVIKSDYAGLKQVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S+GT L++  +  L KL+  I L FDGD  G  A  K        L  G  V  V L  G
Sbjct: 285 SMGTQLSQEHVTFLKKLTHNITLMFDGDFAGKEATLKTGQ---TLLQQGLNVYVVQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG   F   + +      +   +  ++   N             N I+ ++
Sbjct: 342 MDPDEYIGKYGNDTFLNFVQKDKKSFVLFKVQTHQDEINNNDLAYERYFKETTNDISLVQ 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              LR      + D  +   +    E           A +      SQ   Q        
Sbjct: 402 STILRNKLIHDVADIFKINPETIQHEVGVNATPQAPPADYGTYGPSSQAHTQLF----NR 457

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             K    E ALL   +         YQ+++   + N   + +++ L   F EQ Y+   +
Sbjct: 458 LSKHEKAERALLKHFMKDKDTFLNYYQKISSDDFTNKYFKSIFNILHDYFSEQDYYSISD 517

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + Q +      E   +L++            +    +  + Y   +             E
Sbjct: 518 VMQYIESNDLREAFIELEQY--------NLNDEPYENEIEDYIHIINSN----SGEESIE 565

Query: 597 EIEKQIAQVTAKGEAEKTAILISIL 621
            +  ++ + +  G+ E     + ++
Sbjct: 566 ALNHKLREASRIGDVELQKYYLQLI 590


>gi|261820104|ref|YP_003258210.1| DNA primase [Pectobacterium wasabiae WPP163]
 gi|261604117|gb|ACX86603.1| DNA primase [Pectobacterium wasabiae WPP163]
          Length = 584

 Score =  366 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 169/608 (27%), Positives = 280/608 (46%), Gaps = 49/608 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+++ LA   G+ +P        + +   +  L  
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVETIEELATQYGLEVPYETGTGPTQLERHQRQSLYE 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+   + F+  +L  +       YL +RG+ +  I  F +G+AP    ++ +   +    
Sbjct: 119 LMGQLSGFYQQALTQSVGTPALQYLQQRGLSADVISHFAIGFAPPGWDNVLKRFGRNNDD 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  ++   +YDRFR R++FPIR  RG+VIAFGGR L    + KYLNSPET
Sbjct: 179 RSTLNDAGMLV-TNDQGRTYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEAQQNHTELKR----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATDLVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK  FE+ +  +LPL   L++   +    ++PD R +L   +   I  +  + 
Sbjct: 347 DTLVRKEGKAVFEQRMEHALPLSQFLFETLQQQVDMSSPDGRTKLSTLVLPLIGQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +           ++ +    K  +                
Sbjct: 407 LRLYLRQQLGNKLGILDDSQLDRLLPKVAEQAQSYQPPQLKVTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                  L+  L+ +P +  E     L  I  D      L+  L              + 
Sbjct: 452 -----RILVGLLVQNPRLAAEVPDLALEGIEEDKVAGLSLFQDLVKTCNASPGMNMGLLL 506

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-------LYKRFRLL 591
           ++  +  + + L+ +        +     E   + + + Y Q L           R   L
Sbjct: 507 EKYRDSKYRKQLETMASW-NHMIVEEELDEKFRISLAELYDQLLKQRQETLIARDRTHGL 565

Query: 592 S-RQKEEI 598
           + ++K+E+
Sbjct: 566 NAKEKKEL 573


>gi|288941559|ref|YP_003443799.1| DNA primase [Allochromatium vinosum DSM 180]
 gi|288896931|gb|ADC62767.1| DNA primase [Allochromatium vinosum DSM 180]
          Length = 582

 Score =  366 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 170/594 (28%), Positives = 261/594 (43%), Gaps = 42/594 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P +FI  LL    I  LIG  +   +        ++ A CPFHDEKTPSF  +  K F
Sbjct: 4   RLPPEFIDQLLARTDIVELIGSRLQLRKAGR-----EFQARCPFHDEKTPSFSVSPDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   G+ + FL       F E+V+ LA  AG+ +P  D    +       L RL+
Sbjct: 59  YHCFGCGAHGNAIGFLMEYDHLPFREAVEELAERAGLEIP-NDGTPMQAAPDHGPLYRLM 117

Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           E A  ++   L+ +   +R   YL ERG+       F LGYAP     +     +   + 
Sbjct: 118 EDAALYYRRQLREHPEAQRAVAYLKERGLTGEIAAHFGLGYAPARGNPVLAQFGRDTATR 177

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            ++   GL+ + D     YD+FR+R++FPIR  RG+VI FGGR L      KYLNSPET 
Sbjct: 178 TRLQTVGLVSEQDGW--PYDKFRDRVLFPIRDRRGRVIGFGGRVL-GDGKPKYLNSPETP 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG+ LY    A    +          +   +I+VEGY+DV++L Q+G+ N V++LGT
Sbjct: 235 IFHKGRELYGLHEAQQANR----------TFDALIVVEGYLDVIALAQSGITNAVATLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T   L  L KL+P IV CFDGD  G  AA+KA++  L        + F+ LS G+DPD
Sbjct: 285 ATTPEHLNQLLKLAPDIVFCFDGDRAGRAAAWKALETALPLATGHQAIRFLFLSEGDDPD 344

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           + +R  G   F   + ++ PL D L++  + +    T D RA     L+  I+ +     
Sbjct: 345 TLVRREGAEGFRSGLKQAQPLSDFLFEHLSASMDTTTMDGRARFASQLQPYIDRLPAGFY 404

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R    + + D      Q                AR R       +  + SLV        
Sbjct: 405 RDLLIRRLADFTGAPAQALRPAV----------ARRRQPAARLAQPTRPSLV-------- 446

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
               A ++  L++ P +  +      D R        +   L     +        + +R
Sbjct: 447 ----AQVIALLLDRPDLAPQALALNDDWRRSTQRGIDVLIQLLDILRQSPDLSKARLLER 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             E      L++L        +      A +    +     +  ++  +LL+++
Sbjct: 503 WREHPHFGYLQRLSVDPFLRDMTPEGAGAELTGAIRRLSDEVREHEWRQLLNKR 556


>gi|154509388|ref|ZP_02045030.1| hypothetical protein ACTODO_01919 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799022|gb|EDN81442.1| hypothetical protein ACTODO_01919 [Actinomyces odontolyticus ATCC
           17982]
          Length = 656

 Score =  366 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 149/670 (22%), Positives = 255/670 (38%), Gaps = 67/670 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I+ +   + I  +IG++V           G     CPFHDE+TPSF+     G +
Sbjct: 5   IRKDDIEAVRNAVKIDEIIGEHVALRPAG----IGSLKGLCPFHDERTPSFNVRPHLGMF 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119
           +CF C   GD +SF+  +    F E+V+ LAA AG+ L   +     + +    +  L+ 
Sbjct: 61  HCFGCGESGDVISFVQKIDHLPFTEAVEMLAAKAGITLHYEEGGARVRTEEPGKRQRLLD 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              VA +F+   L +    +   +L ERG        F +GYAP S  SL  HLR KGF+
Sbjct: 121 AHRVAEEFYQQQLASPEAHKGRTFLAERGFTQVMCAHFGVGYAPASWDSLTRHLRSKGFT 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLNSP 237
           +++I  +GL      S   YDRFR RL++PIR   G  + FG R L   +    KYLN+P
Sbjct: 181 DQEIQISGLGSQ--GSRGVYDRFRGRLVWPIRDITGATVGFGARRLDDSDKESPKYLNTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++ K + LY    A   +           +   +++VEGY DV++   AGV N V++
Sbjct: 239 ETPIYKKSQLLYGLDLAKKTIA----------TEHKVVIVEGYTDVMAAHVAGVTNAVAT 288

Query: 298 LGTALTEYQLRLLWK-------------------LSPRIVLCFDGDDPGLRAAYKAIDLV 338
            GTA     ++++ +                       ++  FDGD  G +AA +A    
Sbjct: 289 CGTAFGSEHVKIIRRLLGDHADPAAGVLLSTGRAHGSEVIFTFDGDSAGQKAALRAYGED 348

Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398
                   +    +   G+DP       G  A   L+   +PL +   +         + 
Sbjct: 349 QNFAA---QTFVAVAPGGQDPCDLRLSQGDQAIVDLVNSRIPLFEFAIRSVLSQMDLRSA 405

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW--KKNARH 456
           + R +        + HIKD+ LR  Y++ +   L              GR       AR 
Sbjct: 406 EGRVQGLRASAGIVAHIKDRALRAEYTRQLAGWLGMDIPTVEQAIRAAGRVEVLSHEARP 465

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP-AILQEQYQELADIRYDNNEL 515
            + +         +  +       S  E   L  ++ HP   +   ++EL    +     
Sbjct: 466 GEIEMAGAGRPVPASERRGPEDPVSRIERQALEAVLQHPLYAVGSGFEELDGQSFTVPTH 525

Query: 516 QKLWSFL----------------FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           + +   +                 + F   +        + +      E   +       
Sbjct: 526 RAVHDAIRAVGGLDAFTQMMRQAEAHFGPGENATLAASRRFVQ--VVLETAGEFIGPAVT 583

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
               +    A   DVR   +  +A   R   L+R+  E    ++++    +    + +  
Sbjct: 584 QLAVAPLPVAGEADVRSYCRGVVAAMVRM-DLTRKLGEARAALSRL--SEDDPIYSEMFR 640

Query: 620 ILHEVHIQIH 629
            L  +  +  
Sbjct: 641 ELMRLEQRRQ 650


>gi|238916619|ref|YP_002930136.1| DNA primase [Eubacterium eligens ATCC 27750]
 gi|238871979|gb|ACR71689.1| DNA primase [Eubacterium eligens ATCC 27750]
          Length = 587

 Score =  366 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 146/608 (24%), Positives = 254/608 (41%), Gaps = 33/608 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y R+ I +++    I ++I  YV   +  +      Y   CPFH+EK+PSF  +  +  Y
Sbjct: 2   YSREVIDEVISRNDIVDVISGYVKLKKNGS-----SYTGLCPFHNEKSPSFSVSGQRQLY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   G+ ++F+      +F+E+V+ L   AGV LP      +  K+  I+  L+ +
Sbjct: 57  HCFGCGAGGNVITFVMEYENMTFLEAVKMLGERAGVALPQTSMSEEDRKERGIRDRLLEI 116

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            ++A  +++  L++   K    YL +R +    I  F LGYA  S  +L + L+ KG+ +
Sbjct: 117 NKIAATYYYRQLRSENGKAGLDYLKKRELSDSTINSFGLGYATQSTGNLYKLLKDKGYDD 176

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + + E+GL          +++F NR+IFPI     +VI FGGR +      KYLNSPET 
Sbjct: 177 DILKESGLFT---YERGIHEKFWNRVIFPIMDINNKVIGFGGRVM-GDAKPKYLNSPETR 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K +NLY    A              +    +I+ EGYMDV+S+ QAG    V+SLGT
Sbjct: 233 LFDKSRNLYGLNIAR------------TSRKPNMIICEGYMDVISMHQAGFNQAVASLGT 280

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT    RLL + +  +++ +D D+ G++AA +AI +       G     + +   +DPD
Sbjct: 281 ALTPGHARLLKRYTDNVLITYDSDEAGVKAALRAIPI---LKEAGLSTKVINMRPYKDPD 337

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FI+  G  AF++ I  +             N     P+     E  +   +   K++  
Sbjct: 338 EFIKAMGAEAFQERIDNAENSFMYEIGTMLRNYDRGDPESETAFEREVAAKLVTFKEKLE 397

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y +A+  +   +  +            ++    R+    + +       K K     
Sbjct: 398 RDNYLKAVCRQF--MIPEDGMRQMVSRLGNQEGIISRNAGAGTPQPTVERKPKKKREDGL 455

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  LL  LI+   I  +    +    + +     +   ++  +          I   
Sbjct: 456 RQAEKMLLTWLISDRDIFDKVAGYIKPEDFIDPLFSGVAEKVYEQYGTGNISPAAIIADY 515

Query: 541 LCERGFGELL----KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                  E+       LD  + +        +  I          L      + +     
Sbjct: 516 ATTEEHTEVAAMFSADLDESLNNLEREKTLNDIVIRIKANSLNHELNKTVDPKRMQEIII 575

Query: 597 EIEKQIAQ 604
           E ++++ Q
Sbjct: 576 E-QQKLNQ 582


>gi|327395292|dbj|BAK12714.1| DNA primase DnaG [Pantoea ananatis AJ13355]
          Length = 581

 Score =  366 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 181/627 (28%), Positives = 289/627 (46%), Gaps = 58/627 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I  LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVELIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA   G+ +P    +   + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATSHGLDVPYEAGNGPSQMERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E    F+  SL+ +  +    YL+ RG+ +  I  F +GYAP    ++ +   ++   
Sbjct: 119 LMENLNGFYQQSLQQSSAQSARDYLEHRGLSADIINHFSIGYAPAGWDNVLKRFGKQPED 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            E ++EAG+L+  D     YDRFR R++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 RESLMEAGMLVSNDKG-RVYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + AL    +  R          +++VEGYMDV++L Q GV   V+SLG
Sbjct: 237 PVFHKGRQLYGLYEALKNHPEPKR----------LLVVEGYMDVVALAQFGVDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRSTDNVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + +++PL   L+         ++ D +A L       I  I  + 
Sbjct: 347 DTLVRQEGKAAFETRMEQAMPLSSFLFDSLLPQVDLSSRDGKARLSTLALPLITQIPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  QA+ ++L  L    + +        +          P +R              
Sbjct: 407 LRIYMRQALGNKLGILDDSQLEKL----MPKQAPGGSAPVAPPLKRTTM----------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  LI +P +         LA+ +        L+  L +   E       ++
Sbjct: 452 -----RVLVALLIQNPQLATLVPSLDGLAESKIAGLP---LFIELVTRCNENPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +      F + L+ L   V +  +    +EA   D       +         L  +   
Sbjct: 504 LELYRGTNFSQTLETLA--VWNHMIVDEESEAVFQDSLASVYDS--------ALEER--- 550

Query: 598 IEKQIAQVTAKG-EAEKTAILISILHE 623
           +E  IA+    G   ++   L ++   
Sbjct: 551 LEFLIARERTHGLSTDERRELWALSQA 577


>gi|255323755|ref|ZP_05364883.1| DNA primase [Corynebacterium tuberculostearicum SK141]
 gi|255299245|gb|EET78534.1| DNA primase [Corynebacterium tuberculostearicum SK141]
          Length = 640

 Score =  366 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 136/653 (20%), Positives = 256/653 (39%), Gaps = 52/653 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +    P+  ++G+YV                  PF DEKTPSFH    +G+
Sbjct: 5   RIPDSDIQAIRERAPLEEIVGEYVQLKPAG----HDSLKGLSPFKDEKTPSFHVRPQRGY 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118
           Y+CFS    GD  SFL  +   SF E+V+ +A   G  +         + +    +  LI
Sbjct: 61  YHCFSTGKGGDVFSFLMEMEQVSFPEAVEAVAQKIGYHINYQGGSTGARNEKPGTRQRLI 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              + A +F+   L+  +      +L +RG     I  F+ GYAP+   +  +HL + GF
Sbjct: 121 AANKAAHEFYRQQLETPQAATARDFLLDRGFSREIIYDFECGYAPEGWDTATKHLLRLGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           S E++  AG  I         DRF  RL++PI+   G VI FG R L   +   KY+N+ 
Sbjct: 181 SFEELEAAG--ISKMGKRGPIDRFHRRLLWPIKDLSGNVIGFGARKLFDDDKLGKYMNTT 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K K L+    A   +                ++VEGY DV+++  AGV+  V+S
Sbjct: 239 ETMLYRKSKVLFGLDLAKRNIA----------EQHQAVVVEGYTDVMAMYAAGVKTAVAS 288

Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA     L++L          +  ++  FDGD+ G +AA +A D          +   
Sbjct: 289 CGTAFGGEHLQVLRRLMLDDSYFNGELIYTFDGDEAGQKAAMRAFD---GEQKFTGQSFV 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G  A  +LI + +P+ + + +      S ++ + R +       
Sbjct: 346 AVAPDGMDPCDLRLQKGDAAVRELIADRIPMFEFVIQSVIAEYSIDSAEGRLQALRRAVP 405

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  I+DQ L+  Y++ +   +     + +           K A     +       Q +
Sbjct: 406 VVAQIRDQPLQREYARRLAGWVGWPDPEEVLRQVRAEARKPKKAEKPTIRRFDNAKQQPA 465

Query: 471 LVKGKLSKKPSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                +   PS +E         L   +  P +    +  +    Y N+  + +   + +
Sbjct: 466 QQDVPMIHPPSPKETHLWPQREALKLALQMPQVAGSYFDGITADAYTNDAYRLVREAIST 525

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR------QGY 578
                +      +          E +  +  +++D    +  +E  +  +       + Y
Sbjct: 526 VGGAAQGATMPAV----------EWIAAVAGEMQDLTGRNFVSELAVEAILPTDVGPEKY 575

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             ++    +  ++  Q  +++ ++ ++    +      L + L  +     ++
Sbjct: 576 ADSVLSRLQETVVGDQIAQLKARLGRMRPSDDEASYNSLFADLVALEQARREL 628


>gi|238760056|ref|ZP_04621207.1| DNA primase [Yersinia aldovae ATCC 35236]
 gi|238701743|gb|EEP94309.1| DNA primase [Yersinia aldovae ATCC 35236]
          Length = 582

 Score =  366 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 173/598 (28%), Positives = 281/598 (46%), Gaps = 46/598 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIIDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQLERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+  SLK     +   YL  RG+    I+ F +G+AP    +  +   + G S
Sbjct: 119 LMESLSGFYQQSLKGQTANQAREYLKHRGLSEEIIQHFAIGFAPSGWDNALKRFGRDGES 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  +++   YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RTALNDAGMLV-TNDTGRVYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A           V   + + +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEA----------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T   ++LL++ +  ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ +  + PL   L++        ++PD RA+L       I  +  + 
Sbjct: 347 DTLVRKEGKDAFEQRMEGAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLITQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +            +    K  +                
Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQAENANTYQPPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +       Q +   +        L+  L    + Q      ++
Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVETCLAQPGLTTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +  F + L+ L     +  +     E   VD       ++   ++  L++R++
Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDRVEQTFVDTLTSLYDSILEQRQETLIARER 559


>gi|213854871|ref|ZP_03383111.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 504

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 158/541 (29%), Positives = 259/541 (47%), Gaps = 44/541 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 3   RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   + +L +
Sbjct: 58  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 117

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    DF+  SL +   K    YL +RG+ +  I+ F +G+AP    +  +       +
Sbjct: 118 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 177

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  +++AG+L+  +   ++YDRFRNR++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 178 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 235

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  Y  +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 236 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 285

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   + +L++ +  ++ C+DGD  G  AA++A++  + ++  G +V F+ L  GEDP
Sbjct: 286 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 345

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE  + ++ PL   L+         ++PD   +L       IN +    
Sbjct: 346 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDT 405

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    Q +  +L       +                     P+ +L ++++        
Sbjct: 406 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGVSRPAPQLKRTTM-------- 450

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ +P +         L   +     L  L+  L    + Q      ++
Sbjct: 451 -----RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQL 502

Query: 538 H 538
            
Sbjct: 503 L 503


>gi|303229448|ref|ZP_07316238.1| DNA primase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515984|gb|EFL57936.1| DNA primase [Veillonella atypica ACS-134-V-Col7a]
          Length = 585

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 177/631 (28%), Positives = 298/631 (47%), Gaps = 56/631 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           +  + I+ +     I +++ ++V   ++  N     YW CCPFH+EKTPSF     KGFY
Sbjct: 5   FENELIEQIKDANDIVSVVSEHVTLKKKGKN-----YWGCCPFHNEKTPSFSVAPDKGFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           YCF CH  G+ + FL  L G +F+E+++RLA  A +PLP     P++  +E+ +  L   
Sbjct: 60  YCFGCHASGNAIKFLMELEGITFVEALERLANRANIPLPEAKLSPQVRAREERRKKLYEA 119

Query: 121 IEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E+A +FFH+  LK +  K    YL +RG+    IE F+LG+AP+    L +  R++G  
Sbjct: 120 CELAANFFHNCLLKTSYGKAGLEYLKKRGLTDETIEKFRLGFAPEGWDRLYKAFRERGIE 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           E  ++E  L I  ++   +YD FRNR++FPI   +G+V+ FGGR +    + KYLNSPE 
Sbjct: 180 ESILLELNL-IRKNDKGQAYDFFRNRVMFPIMDGKGRVVGFGGRVM-DDSTPKYLNSPEC 237

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGK L+ F  A   ++               ILVEGYMDV+S    GV NVV+SLG
Sbjct: 238 QIFEKGKILFAFDKAYKSIR----------EEKQAILVEGYMDVISAHNKGVTNVVASLG 287

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T+    +L + +  I+L +D D  G +A  +AI+L         +V  + +  G+DP
Sbjct: 288 TAYTKDHGHILMRQADEIILAYDMDGAGRQAVTRAIEL---LQNTDFKVRVLAMPDGKDP 344

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D ++R +G  AF++L+ +++  +D L          N  + +  +   +   I +I  Q 
Sbjct: 345 DDYVRNHGGKAFKELVEKAVKPLDYLLSESLIKHDTNDAEGKQAVMQDIFPYIANIHSQT 404

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           +R        D L+ L      ++S   RY++   +  + +   +++ Q   +       
Sbjct: 405 IRD-------DALKALALPLWLDNSTIFRYFRNYTQKGNIELVDEKITQPKKIVSGD--- 454

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  L+  +I     LQE  Q L    + N + + +   +++ F +   + PE +  
Sbjct: 455 ----EELLMAHVITDSKALQEVVQYLPLEDFQNIQYRGIIEKIYTLFTQIGQYQPESVED 510

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L  + + E+  +L     +  +                   L    R   L  Q +   
Sbjct: 511 VLTPQEY-EIFSRLMIIETNEAVP-----------------VLIRKIRLHSLREQYKMHS 552

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               Q+   G++   + L     E+   I +
Sbjct: 553 ILADQLKRAGDSTFISEL-HKCQEIQNLIRE 582


>gi|331090834|ref|ZP_08339680.1| hypothetical protein HMPREF9477_00323 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399693|gb|EGG79355.1| hypothetical protein HMPREF9477_00323 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 591

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 150/615 (24%), Positives = 265/615 (43%), Gaps = 45/615 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + ++++ +   I ++I  YV   ++ +      Y+  CPFH+EK+PSF  +  K 
Sbjct: 1   MYYSEELVEEVRMRNDIVDVISGYVKLQKKGS-----SYFGLCPFHNEKSPSFSVSREKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+  +F+      SF+E+++ LA  AG+ LP      + ++K  ++  ++
Sbjct: 56  MYYCFGCGAGGNVFTFIMEYENYSFVEALKFLAERAGIDLPEVEYSKEAKEKADLKLTIL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A  +F+  LK    K  + YL  RG+    I  F LGYA      L  +L+ KG+
Sbjct: 116 EINKLAAKYFYAQLKAEGGKTAYAYLKNRGLSEETIVAFGLGYANKYSDDLYRYLKMKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            +E +++AGL I  D    +YD+F NR++FPI     +VI FGGR +      KYLNSPE
Sbjct: 176 GDELLLKAGL-ISADERKGAYDKFWNRVMFPIMDVNNRVIGFGGRVM-GDAKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TI+F K +NLY    A              +   + ++ EGYMDV++L QAG  N V+SL
Sbjct: 234 TIVFDKSRNLYGLNRAR------------TSRKPYFLICEGYMDVIALHQAGFTNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     LL +    + L +D D+ G RAA +AI +       G     + +   +D
Sbjct: 282 GTALTVGHASLLKRYVNEVYLTYDSDEAGTRAALRAIPI---LKDAGITAKVIRMDPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AFE+ I ++        +   +    N+P+ + E    +   + + +++
Sbjct: 339 PDEFIKNLGAEAFEERISKARNGFMFGLEMLEKEFDMNSPEGKTEFHHEVARRLCNFEEE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+       +       +       K A       P+ +  Q+         
Sbjct: 399 IERENYIEAVAQAYHIGYDNLRKLVT-------KMAVQSGLATPAVKPKQAVGKDKIRED 451

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LL  L+    I  +  + ++   +       +   L+  + E     P +I 
Sbjct: 452 GNLQSQKILLTWLLEDEKIFGQIKKYISPKDFTEKLYTTVADILYEQY-EDGEVNPAKIM 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-------------ALALY 585
               +      +  L              E  + +     +               +   
Sbjct: 511 NHFTDEEEHREVASLFHTKIKELTTKQEQEKALKETIIRVKNNSIEYATKMLDPTDIVGL 570

Query: 586 KRFRLLSRQKEEIEK 600
           ++     R+ +++++
Sbjct: 571 QKLMDAKRELQDLQR 585


>gi|253702378|ref|YP_003023567.1| DNA primase [Geobacter sp. M21]
 gi|251777228|gb|ACT19809.1| DNA primase [Geobacter sp. M21]
          Length = 582

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 142/632 (22%), Positives = 273/632 (43%), Gaps = 55/632 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + ++++    PI  +I  Y+   +   N     Y   CPFH EKTPSF+ N ++G +
Sbjct: 2   IPDEKVREVRERAPILQVISDYMSLRKSGAN-----YQGICPFHGEKTPSFNVNPARGIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   G+   F+  + G SF ++V+ LA   GV +P        ++K   Q     +
Sbjct: 57  HCFGCGAGGNSFDFVMRMEGLSFPQAVKFLAKKVGVEIPERPLSRDEKRKMDEQEQAFHI 116

Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            ++A +++   L++         YL +RG+D      +++G+AP    +L +  ++KG  
Sbjct: 117 NDLACEYYRRVLESDEAGSAGRGYLQQRGVDQETAATYRMGFAPAGWDNLAKFFQRKGVP 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            ++  + GLL   +     YD FRNRL+F I    G+ I FGGR +      KY+NSPE+
Sbjct: 177 LDQAEKLGLLRKREGRDGYYDTFRNRLLFTISDLHGRAIGFGGRVM-DDSLPKYINSPES 235

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           +++HK + L+    A   ++               I+VEGY D L+L +AG  NVV++ G
Sbjct: 236 VVYHKSEVLFGVDLAKKGMR----------EQGSAIVVEGYFDHLALYRAGYTNVVATCG 285

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALT   ++LL + + R  + FDGD+ G +A  ++++L    L  G     V +  G+DP
Sbjct: 286 TALTPPHVKLLRRYAERAYMLFDGDEAGRKATVRSMEL---FLEEGFPARVVEVPSGDDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+FIR  G  AF  L+ +SLP+    +    ++    + + +      +   +  I D  
Sbjct: 343 DTFIRREGGAAFAPLLEQSLPIFQSFYLGVLKSLDIRSVEGKVAFVNEVSPRLAKISDPV 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y + I   +         +         + ++    +  +                
Sbjct: 403 ERGLYEKEICRTVGIDQSMLQRKVGIPATPRPQQSKAAPPRTAAT--------------- 447

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  LL  +  +P ++       AD  + N     L   + ++           + +
Sbjct: 448 ----EEVLLTLMAKYPEVVLRVRDHGADKLF-NGAHLGLAEAMIAEAGRG-DLDLSRVLE 501

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           ++            + + R   L+        ++  + ++Q     +R   L    +++ 
Sbjct: 502 QIESP---------EERSRLFSLFVEDAHLEDMNAVKAFEQCCQALER-HALKGGGKDLA 551

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +++A V    ++ +   +++ L  +  +  ++
Sbjct: 552 RELATVDP--DSPRYLEILAELERLRNKKSKL 581


>gi|311069122|ref|YP_003974045.1| DNA primase [Bacillus atrophaeus 1942]
 gi|310869639|gb|ADP33114.1| DNA primase [Bacillus atrophaeus 1942]
          Length = 603

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 155/633 (24%), Positives = 284/633 (44%), Gaps = 38/633 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + +  +     I  +IG YV   ++  N     Y+  CPFH E TPSF  +  K  
Sbjct: 4   RIPDEIVDQVQKSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGENTPSFSVSPDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118
           ++CF C   G+  SFL  + G SF ESV  LA    +  P     +         +  + 
Sbjct: 59  FHCFGCGAGGNVFSFLRQMEGYSFTESVSHLADKYQIDFPDDITINTASRPDSSGEQKMA 118

Query: 119 RLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              E+   F+HH L N +  +    YL  RG     I+ F++GYA DS   + + L ++G
Sbjct: 119 EAHELLKKFYHHLLMNTKEGQDALDYLLSRGFTKELIDEFEIGYALDSWDFMTKFLAKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           F EE + +AGLLI  ++ +  +DRFRNR+IFPI    G V AF GR L   +  KY+NSP
Sbjct: 179 FKEELMEKAGLLIRREDGSGYFDRFRNRIIFPIHDHHGAVAAFSGRAL-GDQQPKYMNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LFHK K LYNF  A   ++K  R           +L EG+ DV+S   +GV+  +++
Sbjct: 238 ETPLFHKSKLLYNFHKARLQIRKQERA----------VLFEGFADVISAVSSGVKESIAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT+LTE   ++L +    I+LC+D D  G  A  KA+DL    +    +V   ++  G 
Sbjct: 288 MGTSLTEEHAKILRRNVEEIILCYDSDSAGYEATLKAVDL---LMKKDCKVRVAIIPDGL 344

Query: 358 DPDSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD +++ YG   F+  I+ + + ++    +   + ++ +   +R      +   I+ + 
Sbjct: 345 DPDDYVKRYGGEKFKNDIINASVTVMAFKMQFFRKGKNLSDEGDRLAYIKSVLKEISALS 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               +  Y + +        +    + + + +       +R+ +     +   +  K +L
Sbjct: 405 GSLEQEVYLKQLAAEFSLSQESLAEQLAVFSKQNGPGQNNRETQTRRAHITTKARQK-RL 463

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++    ++++    +    ++ +E + L ++L++ + E     P+ 
Sbjct: 464 RPAHENAERLLLAHMLRDRGVIKKVLDRIG-FEFNLDEHRALAAYLYALYEEGAELTPQN 522

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
              +L +    +LL  +     +  L               Y + +  ++++ +     +
Sbjct: 523 AMSKLQDDTISQLLSDILMLQINQEL--------SEAELSDYVKKVLNHRKWSM----IK 570

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           E E++ A+   + +    A L   +  ++  + 
Sbjct: 571 EKEQERAEAERQKDFLTAASLAQEIITLNRSLK 603


>gi|21220931|ref|NP_626710.1| DNA primase [Streptomyces coelicolor A3(2)]
 gi|256787911|ref|ZP_05526342.1| DNA primase [Streptomyces lividans TK24]
 gi|289771796|ref|ZP_06531174.1| DNA primase [Streptomyces lividans TK24]
 gi|9910835|sp|Q9S1N4|PRIM_STRCO RecName: Full=DNA primase
 gi|5640130|emb|CAB51551.1| DNA primase [Streptomyces coelicolor A3(2)]
 gi|6759563|emb|CAB69756.1| DNA primase [Streptomyces coelicolor A3(2)]
 gi|289701995|gb|EFD69424.1| DNA primase [Streptomyces lividans TK24]
          Length = 641

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 143/642 (22%), Positives = 265/642 (41%), Gaps = 44/642 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  + SKGF
Sbjct: 4   RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD ++F+  +   +F E+V+RLA  AG+ L   +       +   +  L+ 
Sbjct: 60  FHCFGCQEGGDTITFVMKIDHLTFSEAVERLAGQAGITLRYEEGGYNPSHQRGERIRLVE 119

Query: 120 LIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             ++A  ++   L           +L +RG D  A E F +GY+P     L   LR KGF
Sbjct: 120 AHKIAAQWYAEQLATGPEADTGRAFLADRGFDQAAAEHFGVGYSPQGWDHLTRFLRGKGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237
           S+++++ +GL    +      DRFR RL++PIR   G V+ FG R L +     KYLN+P
Sbjct: 180 SDKELLLSGL--SQEGRRGPIDRFRGRLMWPIRDIGGDVVGFGARKLYEADNGPKYLNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T ++ K + LY    A   + K+ R           ++VEGY DV++   AGV   +++
Sbjct: 238 DTAIYKKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIAT 287

Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            GTA     +++L +L       R++  FDGD  G +AA +A +               +
Sbjct: 288 CGTAFGGDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP       G  A   L+    PL +   ++       +TP  RA         +
Sbjct: 345 APDGMDPCDLRLAKGDDAVADLVEPRTPLFEFALRQIVARYDLDTPAGRAAALDEAAPVV 404

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             IK+   ++  +  +   L  L  +++ +       W ++   +      ++       
Sbjct: 405 ARIKNSGAQHEVAVQLAGMLGILDTQFVVKRIAQLARWARDRGGKGPAPDQRQRGGGPQQ 464

Query: 473 KGKLSKKPSL------------REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           +                      E  LL   +  P ++   +       +       +  
Sbjct: 465 QAGPMTATPRGPALNLRNPVFATERELLKLALQRPELVSPAFDAYGVDEFTAPPYAAVRE 524

Query: 521 FLFSDFVEQ-KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
            +      +     P++   R+ E    + ++ +   V +  + +      +  V + Y 
Sbjct: 525 AIMEAGGAEFGVQDPQDYLVRVREAAPDDTVRAM---VTELAVEAIMLHRGVKGVDEVYA 581

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
            A  +  R R + R+  +I  ++ +++  G+  + A + + L
Sbjct: 582 GAQLVTVRRRAVERRIRDITGRLTRLSGHGDPAELAAVQNEL 623


>gi|304317434|ref|YP_003852579.1| DNA primase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778936|gb|ADL69495.1| DNA primase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 598

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 169/635 (26%), Positives = 294/635 (46%), Gaps = 40/635 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+Y +D I  ++    I +++  YV   R        D+   CPFH EKTPSF+ +  K 
Sbjct: 1   MSYSKDVIDRVIEENDIVDIVSNYVSLKRSGK-----DFKGLCPFHHEKTPSFNVSQEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLI 118
            Y+CF CH  G+ ++F+  +    F E+V+ LA  AG+ +   +    + +K   + ++ 
Sbjct: 56  LYHCFGCHASGNVITFVMNIENIGFKEAVEFLADKAGIKIEEENLSGIEYQKKKLKEEIY 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +  +A  F++  L +   +    YL +RGID   I+ F LGY+P S   L ++L++  +
Sbjct: 116 EINRLAAIFYYKCLYSRSGQAALKYLYDRGIDDVTIKRFGLGYSPSSGLELLKYLKEHKY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S + ++ AGL I   N+   YDRFRNR++FPI   +  VI FGGR L      KYLN+PE
Sbjct: 176 SIDTMVNAGL-ISKSNNGRFYDRFRNRVMFPIIDEKNNVIGFGGRVL-DNMKPKYLNTPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TI+F KGK LY    A                    I+VEGYMD ++L Q+G+ NVV+SL
Sbjct: 234 TIVFKKGKTLYGINYAKK------------TREDKFIIVEGYMDAIALYQSGIDNVVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT  Q +L+ K    +V+ +D D+ G+ A    I  +         VN + +  G+D
Sbjct: 282 GTALTLEQGKLIKKYKNIVVISYDADEAGVEAT---IRGLNLLDELNLNVNILTVPNGKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD ++R  G  AF+KL+ ++  L++   K+  ++   N P +R +    +   ++ IKD+
Sbjct: 339 PDEYVRKEGFDAFKKLLEKTDTLIEYKIKKYKQDLDLNNPADRIKYIKKVCKDLSTIKDK 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y   +    Q        E   + + + +N +       + R         K+  
Sbjct: 399 VKRDVYVSIVAKDAQIPENTIRAEIDQFVKGFVQNNKKIRYTVGNNRHNIKYSGIKKIPS 458

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                   L+  L+    +  +  ++L     D+  L+ + +F+F    +  +   +++ 
Sbjct: 459 L-----KYLIALLLIDNKLYDKVKEKLDINDIDDELLKSVITFIFERLEDGGHVDIKDLS 513

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L      +    +        +  +  E N   V    ++ +        LSR+   I
Sbjct: 514 FMLDNAKLRDEFNDI------FDILYSEKEINEKIVDDCIREIIK-----DDLSRKIVRI 562

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +K+I      G+ EK   L+  L     ++ ++++
Sbjct: 563 KKEIDDSYIAGDIEKERELLVQLQNYEKEMLKLKN 597


>gi|227524443|ref|ZP_03954492.1| DNA primase [Lactobacillus hilgardii ATCC 8290]
 gi|227088402|gb|EEI23714.1| DNA primase [Lactobacillus hilgardii ATCC 8290]
          Length = 605

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 151/639 (23%), Positives = 282/639 (44%), Gaps = 41/639 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P D I+ +   + I +++ QYV   +   N      +  CPFH+E+TPSF  ++ K 
Sbjct: 1   MKIPEDVIEQVRSQVNIVDVVSQYVQLKQSGKNL-----FGLCPFHEERTPSFSVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTD 116
            ++CFSC   G+   F+  +   SF E+V+++A +  + +            ++   Q  
Sbjct: 56  IFHCFSCGRGGNVFKFMMEIENLSFPEAVKKVAEMEHLDVDSKYFTDAAPASRETSEQKQ 115

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           LI L E A   +HH L      +    YL  RG++   I++++LGYAP  R  L+    +
Sbjct: 116 LIELHEQAVKLYHHILINTKMGESALDYLHHRGVNDETIDLYQLGYAPQQR-LLKPFFDE 174

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYL 234
           +    + + ++GL  +  +     DRF +R+++PIR+  GQ +AF GR L+K  +  KYL
Sbjct: 175 RQADYQLLRKSGLFSETQDG-KLRDRFVDRVMYPIRNGTGQTVAFSGRLLAKDSDMPKYL 233

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET LF+K K L+N   A   ++          S    +L EG+MDV+S  Q G+++ 
Sbjct: 234 NSPETELFNKRKILFNLDLARPNIR----------SKQPALLFEGFMDVISAYQGGIKSG 283

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           ++S+GT+LTE Q+  + +++  +++C+DGD PG +A  +AID           +  V + 
Sbjct: 284 IASMGTSLTEQQIYDIQRITREVIVCYDGDAPGQKAIKRAID-AFKQTDHQLDLKVVSIP 342

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G DPD FIR  G   F+ L+ ++   VD       +  +  T + +A         I+ 
Sbjct: 343 DGMDPDEFIRNRGADKFQTLLQQAQSPVDFDLNYLKQEANLKTEEGQAAYISEALKLIST 402

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I     +  Y   + D      Q    +     R       +           Q      
Sbjct: 403 ISSGISQDLYLNRLADSFSIDKQVLKQQLQPLIRKNVTKRANHQIPA-----AQPVNQSP 457

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +   K ++ +  LL  ++++  +  +    ++   + + + Q L+      F +   +  
Sbjct: 458 QKRDKVTVAQMQLLNRMLHNHDVWVKVSG-ISGFSFVDEQYQMLYLLAEGYFSKFDQYNV 516

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                 + E     LL  +D       + +   E + +++       L +      +  +
Sbjct: 517 ATFSNLITEDSLQTLLIDID-------MMNLPEEPSPMEIDND----LDVIMNRAPVETK 565

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            ++ + ++ Q +  G+ +K   L+  L ++  Q    E 
Sbjct: 566 IKKKQAELKQASKIGDVDKQRQLMVDLLKLEQQKRTKEQ 604


>gi|307266218|ref|ZP_07547760.1| DNA primase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918748|gb|EFN48980.1| DNA primase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 596

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 159/636 (25%), Positives = 297/636 (46%), Gaps = 44/636 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y R+ I+ ++    I ++I +YV+  +        ++   CPFH EKTPSF  +  K 
Sbjct: 1   MAYSREMIEKVIEANDIVDVISEYVELKKAGK-----EFKGLCPFHREKTPSFMVSQEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDLI 118
            Y+CF C+  G+ ++F+  +   +F E+++ LA   G+ L       ++  + +   ++ 
Sbjct: 56  VYHCFGCNASGNVVTFIMDIENLTFKEAIEFLADRVGITLEESQLSDQEYRRKKLIDEIY 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           ++ ++A  +F++ L +   ++   Y+ +RG+    I+ F +GY+P     L   L++KG+
Sbjct: 116 KINKLAAMYFYNKLFSEEGRQALAYIRKRGLTEATIKKFGIGYSPPQGNGLLNFLKEKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +E  +++AGLL     +   YDRFRNR++FPI   +G VI FGGR++      KYLN+PE
Sbjct: 176 TESFLVKAGLLSQ--KNNRYYDRFRNRVMFPIIDVKGNVIGFGGRSI-DDSLPKYLNTPE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F KGK L+    A                    I+VEGYMD +SL QAG+   V+SL
Sbjct: 233 TEVFKKGKTLFAINFAKK------------TQQDKFIIVEGYMDAISLHQAGIDCAVASL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT  Q RL+ +    +V+ +D D+ G+ AA + +D+          +  + +  G+D
Sbjct: 281 GTALTGDQARLIKRYKGNVVIAYDADEAGISAALRGLDI---LDELNLNIKVLTIPYGKD 337

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AF +LI  +  L++   K   +N   + P +R      +   I  + D+
Sbjct: 338 PDEFIKKEGVEAFNQLIENADSLIEFKAKVYRKNLDLDNPQDRIIYVKKIAKDIAKLSDE 397

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGY-GRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             R  Y  ++    Q       TE + +  R  +KN ++    G  +  + SS  K    
Sbjct: 398 VKREVYISSVAKVAQISENAVRTEVARFVNRKIEKNQKNMYMAGKIRHNIYSSSSKISP- 456

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  L+  L+    + +   + +     +N +L+ ++  + S   + K     +I
Sbjct: 457 ------EKYLIALLLYDNNLYKRVKETITADMLENVKLKPIFEEIMSRLEDGKKTQINDI 510

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +         + +   ++            ++ +     +        L+ ++E+
Sbjct: 511 VYLLQDENLISDFNDIIKAFYES-----------ENITEQAIDDIINKILINSLAVKREK 559

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           I++ I +    G+ +K   L+  L     ++ +I++
Sbjct: 560 IKRAINEAHMLGDIDKERQLLIELQNCEKEMLKIKN 595


>gi|88798841|ref|ZP_01114423.1| DNA primase [Reinekea sp. MED297]
 gi|88778321|gb|EAR09514.1| DNA primase [Reinekea sp. MED297]
          Length = 621

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 171/637 (26%), Positives = 283/637 (44%), Gaps = 32/637 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI  LL    I  +IG  +D  ++       DYWACCPFH+E +PSF  N  K FY
Sbjct: 5   IPNDFIDSLLDRTDILEVIGNRIDLKKKGK-----DYWACCPFHNENSPSFSVNPGKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           YCF C   G  + FL      SF+ES++ LA IAGV +P      K  ++++ +  L  L
Sbjct: 60  YCFGCGASGTAVKFLQEYDNLSFVESIEELARIAGVEVPREEVSEKARQQQQQRKTLHDL 119

Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +    D+F H L ++   + +  Y+  RG+    +  F++G+AP    +L +H R +  +
Sbjct: 120 MNSCADYFAHQLYQHPYAQGVQDYILGRGLTEDTVHTFQIGFAPPGWDNLIQHFRSENTN 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              +    L    +++   YDRFRNRL+FPIR  +G+VIAFGGR +S  E  KYLNSPET
Sbjct: 180 RALLKVGMLT--QNDNGRIYDRFRNRLMFPIRDIKGRVIAFGGRVMSADEKPKYLNSPET 237

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG  LY  + A   L+              II+VEGYMDV++L Q GV+N V++LG
Sbjct: 238 PIFHKGHELYGLYEARKALK----------DFDNIIIVEGYMDVVALAQHGVRNAVATLG 287

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  ++ L+K +  IV CFDGD+ G RAA +A+   +  L  G +  F+ L  GEDP
Sbjct: 288 TATSETHVQRLFKQTSEIVFCFDGDEAGRRAAIRALTNTMSSLKDGLQARFLFLPDGEDP 347

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ ++  G   F + + ++  L D L++        +  D +A L    +  IN + +  
Sbjct: 348 DTLVQKEGHDGFMRRVKQAQSLPDFLYQHLQTQADISRLDGKARLASLAQGWINKVPEGF 407

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           ++      + + +    ++   +                    +      +  +      
Sbjct: 408 MKQLLLNQLSNLVGLSIEQIEQQFKPEPPSVPAEPMPETVIPTAPPPFDDAQGEFYSVPV 467

Query: 480 PSLREAAL--------LLTLINHPAILQEQY-QELADIRYDNNELQKLWSFLFSDFVEQK 530
              RE ++        L  LI  P +      + L  ++  + + Q L   +     +  
Sbjct: 468 IEKRELSVRIGFVHRALAWLIRFPHLADYVTPETLGRLK-ASGDHQ-LLQRVIELLQQAP 525

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                     LC+ G  E L  +          +     +  D  +   + +      + 
Sbjct: 526 RKDLYFAFDYLCQHGLRETLSPIAASDYLWLEAANDDHKDEKDFARQELEKILRALTQKA 585

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
              +   +++++  +       +       L +   Q
Sbjct: 586 PDDEYNALKQRVMALDPSLTDAEKQR-YRELLKQKKQ 621


>gi|325686027|gb|EGD28085.1| DNA primase [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 612

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 151/640 (23%), Positives = 281/640 (43%), Gaps = 40/640 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               DFI ++   + I ++I QYV  ++R       DY   CPFH EKTPSF  N  K F
Sbjct: 4   RISEDFINEVRGSVNIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFSVNPDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           +YCF CH  G+   F+      +F ESV+R+A  A +P+P    +   K      L+++ 
Sbjct: 59  FYCFGCHKGGNVYKFIMEKEEVTFPESVERVAEFANIPMPQEYQEQPVKLNP---LMQMH 115

Query: 122 EVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A DF+   L      +R   Y  +RG+D   ++ FK+GYAP     L  +LR +G+++
Sbjct: 116 KEAADFYQKVLMTTKIGERGLEYARKRGLDDDLLKHFKIGYAPGKSDLLLTYLRGEGYTD 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239
           +++ E+GL +   +    +DRFR+RL+FP+    G  +AF GR +S   E  KYLNSPET
Sbjct: 176 DQLAESGLFVKSQDG-RLFDRFRDRLMFPMSDESGHPVAFSGRRISDDPEEPKYLNSPET 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K   L++F  A  + +K             ++L EG+MDV+S  +AGV+  ++S+G
Sbjct: 235 SIFNKSDLLFHFSEAKKHARK----------EGHLVLFEGHMDVISAYKAGVKTGIASMG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ ++ +++ ++V+ +DGDDPG  A  +A+ L          +  V+L    DP
Sbjct: 285 TSLTQQQVYMIRRITKQVVINYDGDDPGQHATERAVGLFKQAGNFDLGI--VILPDKLDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG  +++  I  ++   D   +R  +  + N   E+          I  + +  
Sbjct: 343 DEYVKQYGPDSYQAAIRGAISTTDFFLQRLKKKYNLNNEREQVAYLSEAVAEIAALPNPV 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y   +               S   R  ++  +H   +   +    +     +   +
Sbjct: 403 EQDLYVGRLAKETGVSLDALKVNLSRARRKQRRVDQHTSSEVLPELAPLAPAADPQPVTR 462

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               +  LL   I            +    + N E ++L     +     +         
Sbjct: 463 ALKAQQRLLYAYIYSDEARDYL--TVNGFVFPNPEYERLAKLWLNYIETHENVSLSGFLD 520

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            + E           + +  +   +       ++  +   + L L K    + R      
Sbjct: 521 FIPEE---------LQSIIVSTDMTGLPGKITLEELEAQVRVLNLCKIDDEIDRHM---- 567

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + IA    + +     +    +  + ++  +++ +EA+ +
Sbjct: 568 QAIADARRRNDQTAILLETQAI--LQLRQLKLQEEEAVSD 605


>gi|228999086|ref|ZP_04158668.1| DNA primase [Bacillus mycoides Rock3-17]
 gi|228760703|gb|EEM09667.1| DNA primase [Bacillus mycoides Rock3-17]
          Length = 598

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 153/636 (24%), Positives = 270/636 (42%), Gaps = 50/636 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSLDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G SFIE+VQ+L     + +       +++E I  D   ++
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLSFIEAVQKLGERNNISVVDYTSGQDQQENISDDSVIML 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL  RGI    I  F++GYA     +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNVALSYLLNRGITKEMIAKFEIGYASPGWDAAAKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           FS   + +AGLL+  +   + +DRFR R++FPI + +G+V AF GR L   ++ KYLNSP
Sbjct: 179 FSLSTMEQAGLLVRSERDGSHHDRFRGRVMFPIHTLQGKVAAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +F+K K LYN   A  +++K             ++L EGY DVL+  ++G++  V++
Sbjct: 238 ETPIFYKSKLLYNLHQARPFIRK----------RGQVVLFEGYADVLAAVKSGIEESVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L       G  V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LSQVGCHVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG  AFE L+  S+  V          ++      + E    +   +  ++D
Sbjct: 345 DPDEYVQQYGTAAFENLVKASISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELALLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q         
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLGQLHQYRKEQKIQQKQTKQISKPPQIVQ----AKPKF 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  L+  ++    +       +    +   E + +   L++ + +         
Sbjct: 461 SGFERAERELIYHMLQSAEVAFRIEPHIE--DFHTEEHKGILYELYAYYEKGNEPSVGNF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E +             L      LSR K++
Sbjct: 519 LSWLSDEKLKNIITNI------STDEFINPEYSDE----------ILQGHLEALSRHKQK 562

Query: 598 IEK-----QIAQVTAKGEAEKTAILISILHEVHIQI 628
           ++K      + Q+      E     ++ L     + 
Sbjct: 563 LKKMETIFALKQMEKTDPVEAAKFYVAYLQNQKARR 598


>gi|269956943|ref|YP_003326732.1| DNA primase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305624|gb|ACZ31174.1| DNA primase [Xylanimonas cellulosilytica DSM 15894]
          Length = 642

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 143/661 (21%), Positives = 262/661 (39%), Gaps = 55/661 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ ++ +     I  ++  +V           G     CPFHDE+TPSFH     G Y
Sbjct: 5   IKREDVEAVRERARIEEIVSAHVTLKPAG----VGSLKGLCPFHDERTPSFHVRPGVGRY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-------PKIEKKEKIQT 115
           +CF C   GD ++F+    G  F E+V+ LA   GV L   D       P   ++   + 
Sbjct: 61  HCFGCGESGDVIAFVQKTDGLGFAEAVEYLADRVGVQLRYEDSRGGDSGPARREEPGRRQ 120

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L+    VA +F+   L          +L ER  D    E F +GYAP    +L  HL+ 
Sbjct: 121 RLVEANRVAAEFYSAQLFGPDAAAGRKFLAERSFDRSDAEKFGVGYAPTGWDALTRHLQG 180

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYL 234
           KG+++ +++ AGL+  G      YDRFR RL++PIR + G V+ FG R L   +   K+L
Sbjct: 181 KGYTQAELVAAGLVSQGQR--GVYDRFRGRLVWPIRDTTGAVVGFGARRLYDDDQGPKFL 238

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+PET+L+ K + LY    A   + +  R          +++VEGY DV++   +GV+  
Sbjct: 239 NTPETVLYKKSQVLYGIDLAKKAIARDKR----------VVVVEGYADVMAAQLSGVETA 288

Query: 295 VSSLGTALTEYQLRLLWKLS------------------PRIVLCFDGDDPGLRAAYKAID 336
           V++ GTA      +++ +L                     ++  FDGD  G +AA +A  
Sbjct: 289 VATCGTAFAGDHAKIVRRLMGDFGAGGGLQLASGQSLGGEVIFTFDGDAAGQKAAVRAFG 348

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
                     +    + + G DP       G  A + L+   +PL + + ++  E    +
Sbjct: 349 EEQRFHA---QTFVAVAADGMDPCDLRIAKGPQAVKALVDSRVPLFEFVIRKVVEGYDLD 405

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR- 455
           T + R          +  I+D+ ++  Y++++         +   E +  G   +   R 
Sbjct: 406 TVEGRIGALREAAPLVAGIRDRAMQLGYTRSLARWTGMDTDEARREVARAGERPRTPDRS 465

Query: 456 -HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
                          ++         +  E   L+ ++ +P  +   + EL++  +    
Sbjct: 466 TRAADPVAVVPAPAPTMPLPDPRDPVARTERMALVVVLQYPQHVPPVFDELSEDAFAVPA 525

Query: 515 LQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            + + + + +                  + E+  GEL+  L  Q+  A L       +  
Sbjct: 526 WRAVHAAIRAAGGAAAGRTMSGGAWVGAVQEQA-GELVAGLVDQLAVAPLP-----EDRE 579

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           D    +   +    +   L+R   + + ++ ++    E +        L  +  Q   + 
Sbjct: 580 DAIARFVADVVRAVQDLGLTRLIADAKSRLLRLDPGAEPQAYREAFQTLLSMEAQRRTLR 639

Query: 633 S 633
            
Sbjct: 640 E 640


>gi|296130010|ref|YP_003637260.1| DNA primase [Cellulomonas flavigena DSM 20109]
 gi|296021825|gb|ADG75061.1| DNA primase [Cellulomonas flavigena DSM 20109]
          Length = 651

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 137/668 (20%), Positives = 252/668 (37%), Gaps = 57/668 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              R+ ++ +   + I  ++G +V           G     CPFHDE++PSFH     G 
Sbjct: 4   RILREDVEAVRERVRIEEIVGAHVALRPAG----VGSLKGLCPFHDERSPSFHVRPQVGR 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117
           Y+CF C   GD ++F+  + G  F ++V+ LA+  G+ L   +        ++   +  L
Sbjct: 60  YHCFGCGEGGDVIAFVQQVDGLGFTDAVEYLASRVGMQLRYEEGGGPARPGEEPGKRRRL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +    VA +F+   L   +      +L ERG D  A + F +G+AP     L  HLR +G
Sbjct: 120 LDAHRVAEEFYREQLVTPQAAVARTFLAERGFDRAAADEFGVGFAPQGWDGLLRHLRGRG 179

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNS 236
           F+E ++  +GL+  G      YDRFR RL++PIR   G+ + FG R L   ++  KYLN+
Sbjct: 180 FTEAELTASGLVSQGQR--GIYDRFRGRLVWPIREVTGETVGFGARRLLDDDNGPKYLNT 237

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET L+ K   LY    A   + K             +++VEGY DV+++  +GV+  V+
Sbjct: 238 PETPLYRKSHVLYGIDLAKREISKQ----------KQVVVVEGYTDVMAMHLSGVRTAVA 287

Query: 297 SLGTALTEYQLRLLWK------------------LSPRIVLCFDGDDPGLRAAYKAIDLV 338
           + GTA      R++ +                  +   IV  FDGD  G +AA +A    
Sbjct: 288 TCGTAFGTDHARIVRRLVGDHGGAGGVQLAGGASVGGEIVFTFDGDAAGQKAALRAFGED 347

Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398
                   +    +   G DP    +  G  A   L+    PL + + +         T 
Sbjct: 348 QAFSA---QTFVAVEPSGMDPCDLRQARGPDAVAALVASRQPLFEFVIRSTLAAHDLGTA 404

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF--------QKYITEHSGYGRYW 450
           + R          +  I+D  LR  Y + +   L                       R  
Sbjct: 405 EGRIRALRAAAPVVASIRDSALRPEYERLLAGWLGMDDVSGVRRAVADARRAPRPGARQA 464

Query: 451 KKNARHRDQKGPSQRLMQSSLVK---GKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            ++   R    P        + +          +  E   L  ++ HP ++  ++ +L  
Sbjct: 465 DRDVVARPGGRPDDAPAVVPVARMAAPDRRDPVAQVERTALEVVLQHPTLVPREFDDLPA 524

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEI--HQRLCERGFGELLKQLDRQVRDAGLWSA 565
                   + +   + +                    E       + +   + +  +   
Sbjct: 525 DACAAPAYRAVHEAVRAAGGIAVAVDIATHGGEAAWVEAVIEAAAEPVRPLLTELSVAPL 584

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
             +         + + +        L+R+  ++  ++ ++    +  +   L+S L ++ 
Sbjct: 585 PEDRPT--ALPAFVRGVVTRLVDVGLTRRVADVRGRLQRLGDDADPSEQRALLSELLDLE 642

Query: 626 IQIHQIES 633
            Q   + +
Sbjct: 643 AQRRTLRA 650


>gi|229098766|ref|ZP_04229704.1| DNA primase [Bacillus cereus Rock3-29]
 gi|228684610|gb|EEL38550.1| DNA primase [Bacillus cereus Rock3-29]
          Length = 598

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 160/630 (25%), Positives = 277/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQVQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL  RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASLAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIHTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVSFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVSKPSQVVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++    +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +                   +V QG+ + L  +K   +    K E
Sbjct: 519 LSWLSDEKLKNIITDISTD-------EFINPEYTEEVLQGHLETLRRHKEKLV----KME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  ++ Q+      E     ++ L     +
Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|229163238|ref|ZP_04291193.1| DNA primase [Bacillus cereus R309803]
 gi|228620301|gb|EEK77172.1| DNA primase [Bacillus cereus R309803]
          Length = 602

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 160/630 (25%), Positives = 275/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 8   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 62

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 63  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 122

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL +RGI    IE F++GYA  +  +  + L+++G
Sbjct: 123 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 182

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 183 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 241

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 242 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 291

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 292 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPDKL 348

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 349 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 408

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 409 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 464

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++    +       +    +   E + +   L++ + +         
Sbjct: 465 TGFERAEREIIYHMLQSAEVAVRMEPHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 522

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +          S     N     +  Q  L    R      +K E
Sbjct: 523 LSWLSDEKLKNIITDI----------STDEFINPEYTEEVLQGHLETLSR-HQEKLEKME 571

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  ++ Q+      E     ++ L     +
Sbjct: 572 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 601


>gi|152984629|ref|YP_001346115.1| DNA primase [Pseudomonas aeruginosa PA7]
 gi|150959787|gb|ABR81812.1| DNA primase [Pseudomonas aeruginosa PA7]
          Length = 663

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 178/677 (26%), Positives = 288/677 (42%), Gaps = 86/677 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I  ++   +   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVEVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLIR 119
           YCF C   G+ L F+       F ++V+ LA  AG+ +P  +        ++   + L  
Sbjct: 60  YCFGCGAGGNALGFVMDHDQLEFPQAVEELAKRAGMDVPREERGGRGHTPRQPSDSPLYP 119

Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL     
Sbjct: 120 LLAAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNL 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             + +++AGLL++  +S   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPE
Sbjct: 180 QLKAMLDAGLLVENSDSGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG+ LY  + A    +              I++VEGYMDV++L Q G++N V++L
Sbjct: 239 TPVFHKGQELYGLYEARQKNRDL----------DEIMVVEGYMDVIALAQQGIRNAVATL 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +E  ++ L++L P I+ CFDGD  G +AA++A++ VL +L  G RV F+ L  GED
Sbjct: 289 GTATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGED 348

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PDS +R  G+ AF   +  ++ PL +  +++        T + +A L       +  I  
Sbjct: 349 PDSLVRAEGEDAFRARITQQAQPLAEYFFQQLMAEADPATLEGKAHLATLAAPLLEKIPG 408

Query: 418 QKLRYYYSQAIRDRLQQLFQK--------------------------------------- 438
             LR    Q + +      +                                        
Sbjct: 409 NNLRQLMRQKLSEITGLSGENIGQLAQQSPPPAMDHGTTGAFDGDDYFAASAYYENEPSH 468

Query: 439 ------------YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
                          +     R      +   +K   +          +           
Sbjct: 469 APFESAPGYADAQPRKAWNKDRKPWDGKKWDGRKKWDKGGRGDFKAPQRTPVSVESTTLN 528

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            L TL++HP +  +       +  + +   +L   L     +       ++  R      
Sbjct: 529 ALRTLLHHPQLALKVDDA-GTLAREQDTYAQLLVSLLEALQKNPRQSSMQLIARWHGTPQ 587

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
           G LL+ L  +                ++ + +   +         S++  E E+++  V 
Sbjct: 588 GRLLQALGEKEWLIVQ---------ENLEKQFFDTITKLSE----SQRFGEREERLRSVM 634

Query: 607 AKGEAEKTAILISILHE 623
            K  +E T    ++L E
Sbjct: 635 QKSYSELTDEEKALLRE 651


>gi|229104925|ref|ZP_04235582.1| DNA primase [Bacillus cereus Rock3-28]
 gi|229117790|ref|ZP_04247155.1| DNA primase [Bacillus cereus Rock1-3]
 gi|228665653|gb|EEL21130.1| DNA primase [Bacillus cereus Rock1-3]
 gi|228678499|gb|EEL32719.1| DNA primase [Bacillus cereus Rock3-28]
          Length = 598

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 160/630 (25%), Positives = 277/630 (43%), Gaps = 40/630 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQVQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL  RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASLAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIHTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q+        
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVSKPSQVVQT----KPKL 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  ++    +       +    +   E + +   L++ + +         
Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +                   +V QG+ + L  +K   +    K E
Sbjct: 519 LSWLSDEKLKNIITDISTD-------EFINPEYTEEVLQGHLETLRRHKEKLV----KME 567

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           I  ++ Q+      E     ++ L     +
Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597


>gi|227495141|ref|ZP_03925457.1| possible DNA primase [Actinomyces coleocanis DSM 15436]
 gi|226831593|gb|EEH63976.1| possible DNA primase [Actinomyces coleocanis DSM 15436]
          Length = 663

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 145/681 (21%), Positives = 269/681 (39%), Gaps = 69/681 (10%)

Query: 1   MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M+    +  I+ +   + +  ++  YV       N     +   CPFHDE TPSF+ N +
Sbjct: 1   MSGLIIKADIEKVKDTVDLEEIVSNYVTLRPAGINT----FKGLCPFHDENTPSFNVNTA 56

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDL 117
           +GF++CF C   GD +SFL  +   SF ++V+ LA   G+ L   + K   +    +  L
Sbjct: 57  RGFWHCFGCGEGGDAISFLQKIDHLSFTDAVEHLAGKYGITLRYEEGKAPTQDYGKRQRL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           + +  VA +++   L +        +L ERG  + A + F +G+AP     L   LR +G
Sbjct: 117 LDMHRVAEEYYQAQLHSPEALPGRQFLSERGFSAEAAKHFGVGFAPSGWNGLSNVLRAQG 176

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNS 236
           F+++++I  GL      S   YDRFR RL++PIR   G  I FG R L   ++  KYLN+
Sbjct: 177 FTDQELITGGLASQ--GSRGVYDRFRGRLMWPIRDLTGATIGFGARRLLPDDNGPKYLNT 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET ++HK K LY    A   +               +++VEGY DV++   AG+   V+
Sbjct: 235 PETPIYHKSKVLYGLDLAKRSIAAK----------RQVVIVEGYTDVMAAHLAGIDTAVA 284

Query: 297 SLGTALTEYQLRLLWK-------------------LSPRIVLCFDGDDPGLRAAYKAIDL 337
           S GTA     ++++ +                       ++  FDGD  G +AA KA   
Sbjct: 285 SCGTAFGSEHVKIVRRLLGDIADPSMGLQLASGESRGGEVIFTFDGDAAGQKAALKAYGE 344

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397
                    +    +  RG DP       G  A  KL+   +PL + + +        +T
Sbjct: 345 DQNFA---LQTFVAIEKRGMDPCDLRIHEGDEAIRKLVAARIPLFEFVLRTTLTAVDLST 401

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
           P+ R          ++ I+D+ L+  Y + +   L    +   +E +   +         
Sbjct: 402 PEGRVAGLRAAAPVVSSIRDRALQKEYVRLLSGWLGMEARDVASEVARAAKMAAYAETQP 461

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLR-----------EAALLLTLINHP-AILQEQYQEL 505
             +   Q          +   +  L            E+  L +++  P   L   + E+
Sbjct: 462 QAQVKPQSETAKVTSPTEAESEAPLAYGDMRSPRFKLESQALASVLQCPVDCLGTGFDEI 521

Query: 506 ADIRYDNNELQKLWSFL-----FSDFVEQ------KYFLPEEIHQRLCERGFGELLKQLD 554
             + + +   +++   L      + F             P     +  E    EL  +  
Sbjct: 522 DLLTFTSPAFREVHKLLQTCGGLARFEAHLQAAERAIPDPAVAVAKATEGWNRELFDRAS 581

Query: 555 RQVRDAGLWSATTEANIVDVRQ--GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
             V+              +  +   + +++ +      ++R  E++  +I ++ A G  +
Sbjct: 582 NPVKQVLHALLVVVLPQDEAEKLGYFARSVTISLVKTSIARSIEQLRFEIGRLDALG--Q 639

Query: 613 KTAILISILHEVHIQIHQIES 633
            ++     +  +  +   ++ 
Sbjct: 640 DSSAEFRKMLTLEERRRALDE 660


>gi|329934713|ref|ZP_08284754.1| DNA primase [Streptomyces griseoaurantiacus M045]
 gi|329305535|gb|EGG49391.1| DNA primase [Streptomyces griseoaurantiacus M045]
          Length = 635

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 151/640 (23%), Positives = 264/640 (41%), Gaps = 46/640 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  + SKG 
Sbjct: 4   RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD L+F+  +   SF E+V+RLAA AG+ L   +       +   +  L+ 
Sbjct: 60  FHCFGCQEGGDTLTFVMKIDHLSFSEAVERLAAQAGITLRYEEGGYNPSHQRGERIRLVE 119

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             ++A  ++   L  +        +L  RG D  A   F +GY+P     L   LR KGF
Sbjct: 120 AHKLAAQWYAEQLATHPEADTGRAFLAARGFDQTAAVHFGVGYSPQGWDHLTRFLRGKGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237
           ++++++ +GL  +        DRFR RL++PIR   G+V+ FG R L +     KYLN+P
Sbjct: 180 TDKELLLSGLAQE--GRRGPIDRFRGRLMWPIRDIGGEVVGFGARKLYEADNGPKYLNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T L+ K + LY    A   + KS R           ++VEGY DV++   AGV   +++
Sbjct: 238 DTALYRKSQVLYGIDLAKKDIAKSSRA----------VVVEGYTDVMACHLAGVTTAIAT 287

Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            GTA     +++L +L       R++  FDGD  G +AA +A +               +
Sbjct: 288 CGTAFGTEHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP       G  A  +L     PL +   ++       +TP  RA         +
Sbjct: 345 APDGMDPCDLRLVKGDEAVAELAEPRTPLFEFALRQIVSRYDLDTPAGRAAALDEAAPVV 404

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK----------NARHRDQKGP 462
             IK+   ++  +  +   L  L  +++    G    W +           +  R    P
Sbjct: 405 ARIKNSGAQHEVAVQLAGLLGILDTQFVVRRVGQIARWARERGGRGPAPAGSGPRQSHEP 464

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
                        L       E  LL   +  P ++   +       +       +   +
Sbjct: 465 GPSRPVPRGPALNLRNPVYATERELLKLALQRPELVSPAFDAYGTDEFTAAPYAAVREAI 524

Query: 523 FSD-FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
                 EQ    P+E   R+ E    + ++ +  ++    +   T +       + Y   
Sbjct: 525 QEAGGAEQGVRDPQEYLLRVREAAPDDTVRSMVTELAVEAILRRTVD-------EHYAGE 577

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
             +  R R + R+  +I+ Q+ ++ A G+  + + + + L
Sbjct: 578 QLVTVRRRAVERRVRDIQSQLTRLAAHGDPAQLSAVQNEL 617


>gi|50119629|ref|YP_048796.1| DNA primase [Pectobacterium atrosepticum SCRI1043]
 gi|49610155|emb|CAG73595.1| DNA primase [Pectobacterium atrosepticum SCRI1043]
          Length = 584

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 168/607 (27%), Positives = 277/607 (45%), Gaps = 47/607 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+++ LA   G+ +P        + +   +  L  
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVETIEELATQYGLEVPYETGTGPTQLERHQRQSLYE 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+   + F+  +L  +       YL +RG+ +  I  F +G+AP    ++ +   +    
Sbjct: 119 LMGQLSGFYQQALSQSIGTSALQYLQQRGLSAEVISHFAIGFAPPGWDNVLKRFGRNNDD 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  ++   +YDRFR R++FPIR  RG+VIAFGGR L    + KYLNSPET
Sbjct: 179 RSTLNDAGMLV-TNDQGRTYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEAQQNHPELKR----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATDLVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK  FE+ +  +LPL   L++   +    ++PD R +L       I  +  + 
Sbjct: 347 DTLVRKEGKAVFEQRMEHALPLSQFLFETLQQQVDMSSPDGRTKLSTLALPLIGQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    +           ++ +    K  +                
Sbjct: 407 LRLYLRQQLGNKLGILDDSQLDRLLPKVADQAQSYQQPQLKVTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                  L+  L+ +P +  E     L  I  D      L+  L              + 
Sbjct: 452 -----RILVGLLVQNPRLAAEVPDLALEGIEEDKVAGLSLFQDLVKTCNASPGMNMGLLL 506

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANI------VDVRQGYQQALALYKRFRLLS 592
           ++  +  + + L+ +              +  I        + +  Q  L    R   L+
Sbjct: 507 EKYRDSKYRKQLETMASWNHMIEEEELDEKFRISLAELYDQLLKQRQDTLIARDRTHGLN 566

Query: 593 -RQKEEI 598
            ++K+E+
Sbjct: 567 AKEKKEL 573


>gi|295394809|ref|ZP_06805024.1| DNA primase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972405|gb|EFG48265.1| DNA primase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 625

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 149/619 (24%), Positives = 252/619 (40%), Gaps = 37/619 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              R+ I ++    PI  ++G+YV       ++        CPFHDE+TPSF+   S G 
Sbjct: 4   RIGREDIDEVRSRSPIDEVVGEYVSLKNAGIDSK----KGLCPFHDERTPSFNVRPSIGR 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   GD   F+  + G +F+E+VQRLA  AGV L            ++  ++ + 
Sbjct: 60  YHCFGCGKSGDVFEFIMEMDGLTFVEAVQRLAERAGVQLSYTGAPSGDSGSVRQSIMEMH 119

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           +VA DF+     +        Y+  RG +   ++ F +G++P     L  HLR +GF  E
Sbjct: 120 QVAADFYREQFASPVASVAREYMAGRGFEQQTLDTFGVGFSPQGWDGLLSHLRGRGFRVE 179

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPETI 240
            + + GL+I        YDRFR RL++PIR   G+VI FG R L    +  KYLN+PET 
Sbjct: 180 DMEKGGLVI--AGRRGHYDRFRGRLMWPIRDVTGRVIGFGARKLFDEDQGPKYLNTPETP 237

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++HK K LY    A   + K+ R           ++VEGY DV++   +GV   V++ GT
Sbjct: 238 VYHKNKVLYGLDLAKRPIAKTKRA----------VVVEGYTDVMAAHISGVTQAVATCGT 287

Query: 301 ALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           A     + +L ++        ++  FDGD+ G +AA KA       L    + + V+   
Sbjct: 288 AFGSEHVSILRRMMNDDATAEVIFTFDGDEAGQKAALKAFGDDQRFLA---QTSVVVEPG 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G DP    +  G+ A   LI    PL + +          +T + +          I  I
Sbjct: 345 GRDPADLWKEKGEGAVRDLIESRRPLFEFVIDMTVAQFDASTVEGQVAAIRAAAPVIAGI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           KD  LR  Y + +   +     + +     Y R   +  +   Q+    +       +  
Sbjct: 405 KDVALRPGYERYVAGLVGVDTDQVVRAVRAYQRNQNQRQQSNQQQPNQPQHQFQQATQSP 464

Query: 476 LSKKPS------LREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVE 528
           LS            E   L+  + +P  +  + +  L    +D+   + +   +      
Sbjct: 465 LSGPDPTQSAGYRVERGALMVALQYPQYVNAKLFDALNGKVFDDPRHRAIHEAMKQA--- 521

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                  E   R  +        +L   V +  +      A   D  + Y + +      
Sbjct: 522 GGVRSGAEYPARWADAVREATPHELVPLVSELTMAPLP--ATNADGIERYSRGIVARLFD 579

Query: 589 RLLSRQKEEIEKQIAQVTA 607
           + + R    +  ++ +   
Sbjct: 580 KDMVRISGLLHARLRRTDP 598


>gi|71281870|ref|YP_270984.1| DNA primase [Colwellia psychrerythraea 34H]
 gi|71147610|gb|AAZ28083.1| DNA primase [Colwellia psychrerythraea 34H]
          Length = 585

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 163/616 (26%), Positives = 270/616 (43%), Gaps = 49/616 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              R FI DLL    I +L+   V   +   N     Y ACCPFH+EK+PSF  +  K F
Sbjct: 4   RISRQFIDDLLNRADIVDLVDSRVPLKKAGKN-----YQACCPFHNEKSPSFTVSQDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL---- 117
           Y+CF C   G+ +SFL       F+++V+ LA+  G+ +   +     +E+ +       
Sbjct: 59  YHCFGCGEHGNAISFLMEFDRLDFVDAVEELASHCGMEVVREENTASPEEQRRQQQVYQQ 118

Query: 118 ----IRLIEVATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172
                 L+   + FF   LK A DK     YL  RG+    ++ F +GY  D+   +   
Sbjct: 119 KQDDYELMSQISRFFQQQLKVASDKERAIDYLKARGLSGEVVKRFGIGYISDAWDGVMNS 178

Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
             + G + +++I+ G+ I GD     YDRFR R++FPI   RG+VI FGGR L   E  K
Sbjct: 179 FSRNGQANQQLIDLGMAISGDKK-RPYDRFRGRIMFPISDKRGRVIGFGGRVL-GDEKPK 236

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPET ++HKG+ LY    A    ++  R          +I+VEGYMDV++L Q GV 
Sbjct: 237 YLNSPETRVYHKGQELYGLHEAKQANKQLKR----------LIVVEGYMDVVALAQHGVD 286

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
             V+SLGTA T  QL+ L++  P ++ C+DGD  G  AA++A++  L  +  G  + FV 
Sbjct: 287 YAVASLGTATTFEQLQTLFRTVPDVICCYDGDRAGRDAAWRAMENALPLIRDGFSLKFVF 346

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  GEDPDS I   G+ AFE +I  ++PL   L+++  +    ++ + RA L    +  +
Sbjct: 347 LPDGEDPDSLIGTQGQQAFETIIDNAVPLSKFLFEQLMQKVDMSSLEGRAALVESFQPYL 406

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           + + D  L+      I +      ++++ + +   +        + +   +         
Sbjct: 407 SKLPDSILKDAMLNEIANNFGTGSEQFLAKFTKSIKSTAVKTAVKTRTKVTPV------- 459

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
                        + L  L+ HP I                 +  L   +     +    
Sbjct: 460 ------------RSALALLLEHPHIANSLGDINVLQPLTVPGIPLLMQ-VLGICQQNPDI 506

Query: 533 LPEEIHQRLCERGFGELLKQLD---RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              ++ +       G  L +L      V          +     +    +Q   +  +  
Sbjct: 507 KSPQLLESFRGTEQGTQLAKLMCWQHNVEADAATDVFLDNIEKLLNDFVEQRTEVLLQKA 566

Query: 590 LLSRQKEEIEKQIAQV 605
              +   E ++++  +
Sbjct: 567 RAGQMTAEEKQELQAL 582


>gi|194467796|ref|ZP_03073782.1| DNA primase [Lactobacillus reuteri 100-23]
 gi|194452649|gb|EDX41547.1| DNA primase [Lactobacillus reuteri 100-23]
          Length = 621

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 160/646 (24%), Positives = 280/646 (43%), Gaps = 41/646 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR+ I ++   + I ++IG+YV   +   N         CPFHDEKTPSF  N+ K F
Sbjct: 3   KIPRNVIDEIRNSVDIGDVIGRYVQLHQAGKNL-----IGLCPFHDEKTPSFSVNEEKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           +YCF CH  G+   FL  L    F+++V+ +A  + + +P        +        L  
Sbjct: 58  FYCFGCHRSGNVFQFLMELKHIDFVDAVKEIANDSNIKIPEQYVSVPAKPLNNENRQLFD 117

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L + A   +HH L      +    YL +RG+    IE F LGYAPD R  L+   +Q+  
Sbjct: 118 LHDKAAKLYHHILVNTPAGQVALNYLKKRGMSEELIEQFGLGYAPDQR-ILKPFFQQQKV 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLNS 236
             + + ++GL  +        DRF  R+++PI++ +GQVIAF GR +   ++   KYLNS
Sbjct: 177 DYQLLRKSGLFSEDQQG-ELRDRFIERIMYPIKNGQGQVIAFSGRLIDTSKTNLPKYLNS 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F+K + L+NF  A    +K  R          + L EG+MDV+S   AG++N ++
Sbjct: 236 PETPIFNKRRTLFNFDVARKATRKDGR----------LYLFEGFMDVISAFAAGIENGIA 285

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S+GT+ TE Q+ ++ + + ++ +C+DGD PG  A  +AI LV  H     +V  V L  G
Sbjct: 286 SMGTSFTEEQVAIIGRATKQLDICYDGDQPGQNAIDRAISLVNDHRPNQLQVKVVQLPAG 345

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPD +++ YG   F   L  +     +   +     ++ +  +E  +        I  +
Sbjct: 346 IDPDEYVQKYGPQQFNAYLTNKEETTTEFYLRFLRNGKNLDNQNELMQYLNQALKVIAQV 405

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ------RLMQS 469
           +       Y Q +        Q   T+     +    + + R ++ PS       +    
Sbjct: 406 QAPLEEDMYLQRLASEFNLDRQTLKTQLDQLRQQLGIHNQPRIKQQPSLVRHQQFQQTSE 465

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              +     +  L E  LL  ++    +      +  +  + + + Q L+    S F E 
Sbjct: 466 EEHRKVKLSRTELAEQILLRYMLYDREVWMHVTSD-HNFHFAHEKYQTLYLLAASYFSEN 524

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
             +   +    L E      L Q++    D  +             +     + +     
Sbjct: 525 GSYSTADFLDYLDESSLQGTLGQIENLNVDQEVDM-----------RAIDDCIHMIAEQT 573

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            L+ Q  + + Q+ +  +    E    L   L ++  Q  +++++E
Sbjct: 574 PLAAQIADKQAQLKEANSLHNTELATQLTIELVKLLKQQQRLKTEE 619


>gi|229006634|ref|ZP_04164268.1| DNA primase [Bacillus mycoides Rock1-4]
 gi|228754495|gb|EEM03906.1| DNA primase [Bacillus mycoides Rock1-4]
          Length = 598

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 154/636 (24%), Positives = 271/636 (42%), Gaps = 50/636 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSLDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G SFIE+VQ+L     + +       +++E I  D   ++
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLSFIEAVQKLGERNNISVVDYTSGQDQQENISDDSVIML 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL  RGI    I  F++GYA     +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNVALSYLLNRGITKEMIAKFEIGYASPGWDAAAKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           FS   + +AGLL+  +   + +DRFR R++FPI + +G+V AF GR L   ++ KYLNSP
Sbjct: 179 FSLSTMEQAGLLVRSERDGSHHDRFRGRVMFPIHTLQGKVAAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +F+K K LYNF  A  +++K             ++L EGY DVL+  ++G++  V++
Sbjct: 238 ETPIFYKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGIEESVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L       G  V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LSQVGCHVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG  AFE L+  S+  V          ++      + E    +   +  ++D
Sbjct: 345 DPDEYVQQYGTAAFENLVKASISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELALLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q         
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLGQLHQYRKEQKIQQKQTKQISKPPQIVQ----AKPKF 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  L+  ++    +       +    +   E + +   L++ + +         
Sbjct: 461 SGFERAERELIYHMLQSAEVAFRIEPHIE--DFHTEEHKGILYELYAYYEKGNEPSVGNF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E +             L      LSR K++
Sbjct: 519 LSWLSDEKLKNIITNI------STDEFINPEYSDE----------ILQGHLEALSRHKQK 562

Query: 598 IEK-----QIAQVTAKGEAEKTAILISILHEVHIQI 628
           ++K      + Q+      E     ++ L     + 
Sbjct: 563 LKKMETIFALKQMEKTDPVEAAKFYVAYLQNQKARR 598


>gi|228993036|ref|ZP_04152959.1| DNA primase [Bacillus pseudomycoides DSM 12442]
 gi|228766684|gb|EEM15324.1| DNA primase [Bacillus pseudomycoides DSM 12442]
          Length = 598

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 154/636 (24%), Positives = 271/636 (42%), Gaps = 50/636 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSLDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G SFIE+VQ+L     + +       +++E I  D   ++
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLSFIEAVQKLGERNNISVVDYTSGQDQQEDISDDSVIML 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL  RGI    I  F++GYA     +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNVALSYLLNRGITKEMIAKFEIGYASPGWDAAAKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           FS   + +AGLL+  +   + +DRFR R++FPI + +G+V AF GR L   ++ KYLNSP
Sbjct: 179 FSLSTMEQAGLLVRSERDGSHHDRFRGRVMFPIHTLQGKVAAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +F+K K LYNF  A  +++K             ++L EGY DVL+  ++G++  V++
Sbjct: 238 ETPIFYKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGIEESVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L       G  V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LSQVGCHVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG  AFE L+  S+  V          ++      + E    +   +  ++D
Sbjct: 345 DPDEYVQQYGTAAFENLVKASISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELALLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q         
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLGQLHQYRKEQKIQQKQTKQISKPPQIVQ----AKPKF 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  L+  ++    +       +    +   E + +   L++ + +         
Sbjct: 461 SGFERAERELIYHMLQSAEVAFRIEPHIE--DFHTEEHKGILYELYAYYEKGNEPSVGNF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E +             L      LSR K++
Sbjct: 519 LSWLSDEKLKNIITNI------STDEFINPEYSDE----------ILQGHLEALSRHKQK 562

Query: 598 IEK-----QIAQVTAKGEAEKTAILISILHEVHIQI 628
           ++K      + Q+      E     ++ L     + 
Sbjct: 563 LKKMETIFALKQMEKTDPVEAAKFYVAYLQNQKARR 598


>gi|320539900|ref|ZP_08039559.1| putative DNA primase [Serratia symbiotica str. Tucson]
 gi|320030086|gb|EFW12106.1| putative DNA primase [Serratia symbiotica str. Tucson]
          Length = 582

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 171/630 (27%), Positives = 282/630 (44%), Gaps = 53/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRLFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           YYCF C   G+ + FL       F+E+++ LA I G+ +P        + +   +  L +
Sbjct: 59  YYCFGCGAHGNAVDFLMNYDRLEFVETIEELATIHGLEVPYEAGTGLTQIERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+  SL          YL +RG+    I  F +G++P       +   +   +
Sbjct: 119 LMEQLSAFYQQSLHQPAGTLARNYLQQRGLSDDVIRHFAIGFSPAGWDIALKRFGRDNDA 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  ++   SYDRFR R++FPIR  RG+VIAFGGR        KYLNSPET
Sbjct: 179 RSALNDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIAFGGRV-VGDGMPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A        R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEAQQSHPTLQR----------VLVVEGYMDVVALAQYGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRATDNVICCYDGDRAGREAAWRALETTLSYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GKT FE+ +  + PL   L++        ++PD R +L       I+ I  + 
Sbjct: 347 DTLVRKEGKTVFEQRMELAQPLSTFLFETLMPQVDLSSPDGRTKLSSLAIPMISQIPSET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q +  +L    +  + +            +    K  +                
Sbjct: 407 LRLYLRQQLGQKLGMPDEFQLEKLLSKQVENASPYQAPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +       L  +         L+  L    + Q      ++ +
Sbjct: 452 -----RILIGLLVQNPRLA-TLIPSLEGLEQTKQAGLPLFVELVQTCLAQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              +    + L+ L     +  +     E   +D       ++        L ++ E + 
Sbjct: 506 LYRDNKLSQQLETLATW--NHMIVDDRVEQTFLDTLASLYDSV--------LEQRLEAL- 554

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             IAQ    G +++    +  L+++  + +
Sbjct: 555 --IAQARTHGLSQEEREEVRSLNQILAKKN 582


>gi|162149106|ref|YP_001603567.1| DNA primase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545150|ref|YP_002277379.1| DNA primase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787683|emb|CAP57279.1| DNA primase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532827|gb|ACI52764.1| DNA primase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 619

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 173/585 (29%), Positives = 257/585 (43%), Gaps = 15/585 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M     F+++L    PI+++IG+     R   N     + ACCPFH EKTPSF+  D   
Sbjct: 1   MALDPAFLEELRARTPIASVIGRRTKLVRSGRN-----WKACCPFHGEKTPSFYVYDDH- 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++CF C   GD +SF+    G SF E+V  LA  AG+ +P   P+  + E+    L  +
Sbjct: 55  -FHCFGCGAHGDVISFVMQSEGRSFPEAVAELAGEAGLEVPRASPREREAEQRARGLSDV 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +++    +   L     +    YL  RG+    I  F LG++ D R  L   L   G + 
Sbjct: 114 LDLVQAAWVRRLHAPEGRAGLAYLRGRGLSDETIAGFGLGWSGDGRGGLLNELAPHGVTP 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E + +AGL+   ++     + F NR+ FPIR  RG +++FGGR L      KYLN PET 
Sbjct: 174 EMLAQAGLMRVDEDGRPKGELFFNRVTFPIRDRRGSLVSFGGRIL-GDGQPKYLNGPETA 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K + L+                 R      +++VEGYMDV++L QAG    V+ LGT
Sbjct: 233 LFSKRRTLFGMDR---ARAALRTARPRGAPPVELVVVEGYMDVIALHQAGFPGAVAPLGT 289

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q+  LW+++   +LCFDGD  G RAA KA +  L  L     + F  L  GEDPD
Sbjct: 290 ALTSEQMEALWQMAAAPILCFDGDGAGQRAAVKAAETALPLLDINRTLRFCALPEGEDPD 349

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S +R  G  A   L+  + P+  +L+   T+      P++RA +   L      I D+ L
Sbjct: 350 SLLRGQGSGAVAALLEGARPIGHVLFDLLTQGVRDPGPEQRAAVRRRLVEAAALIADKGL 409

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y   + DR    F+ Y        R  +   R   ++        S+      +   
Sbjct: 410 AAEYRSTLLDRF---FETYRRRPGQGKRAGQGGQRGDGRQAGVSWPAGSAPAPFDEAAAA 466

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             R   L   L+ HP IL E       +      L ++ + +            + + +R
Sbjct: 467 QERMRILTAILLRHPHILPEVEDAYCRLDLP-PALARVRAAVMDLAASGDLTDAKALDRR 525

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
           L E G  E    +          SA  +   VDV Q +    AL 
Sbjct: 526 LDEGGLAEERMAVVAARPLPMSLSAPDDLMAVDVVQEWWHFFALL 570


>gi|326390578|ref|ZP_08212134.1| DNA primase [Thermoanaerobacter ethanolicus JW 200]
 gi|325993403|gb|EGD51839.1| DNA primase [Thermoanaerobacter ethanolicus JW 200]
          Length = 596

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 159/636 (25%), Positives = 297/636 (46%), Gaps = 44/636 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y R+ I+ ++    I ++I +YV+  +        ++   CPFH EKTPSF  +  K 
Sbjct: 1   MAYSREMIEKVIEANDIVDVISEYVELKKAGK-----EFKGLCPFHREKTPSFMVSQEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDLI 118
            Y+CF C+  G+ ++F+  +   +F E+++ LA   G+ L       ++  + +   ++ 
Sbjct: 56  VYHCFGCNASGNVVTFIMDIENLTFKEAIEFLADRVGITLEESQLSDQEYRRKKLIDEIY 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           ++ ++A  +F++ L +   ++   Y+ +RG+    I+ F +GY+P     L   L++KG+
Sbjct: 116 KINKLAAMYFYNKLFSEEGRQALAYIRKRGLTEATIKKFGIGYSPPQGNGLLNFLKEKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +E  +++AGLL     +   YDRFRNR++FPI   +G VI FGGR++      KYLN+PE
Sbjct: 176 TESFLVKAGLLSQ--KNNRYYDRFRNRVMFPIIDVKGNVIGFGGRSI-DDSLPKYLNTPE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F KGK L+    A                    I+VEGYMD +SL QAG+   V+SL
Sbjct: 233 TEVFKKGKTLFAINFAKK------------TQQDKFIIVEGYMDAISLHQAGIDCAVASL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT  Q RL+ +    +V+ +D D+ G+ AA + +D+          +  + +  G+D
Sbjct: 281 GTALTGDQARLIKRYKGNVVIAYDADEAGISAALRGLDI---LDELNLNIKVLTIPYGKD 337

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AF +LI  +  L++   K   +N   + P +R      +   I  + D+
Sbjct: 338 PDEFIKKEGVEAFNQLIENADSLIEFKAKVYRKNLDLDNPQDRIIYVKKIAKDIAKLSDE 397

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGY-GRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             R  Y  ++    Q       TE + +  R  +KN ++    G  +  + SS  K    
Sbjct: 398 VKREVYISSVAKVAQISENAVRTEVARFVNREIEKNQKNMYMAGKIRHNIYSSSSKISP- 456

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  L+  L+    + +   + +     +N +L+ ++  + S   + K     +I
Sbjct: 457 ------EKYLIALLLYDNNLYKRVKETITADMLENVKLKPIFEEIMSRLEDGKKTQINDI 510

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +         + +   ++            ++ +     +        L+ ++E+
Sbjct: 511 VYLLQDENLISDFNDIIKAFYES-----------ENITEQAIDDIINKILINSLAVKREK 559

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           I++ I +    G+ +K   L+  L     ++ +I++
Sbjct: 560 IKRAINEAHMLGDIDKERQLLIELQNCEKEMLKIKN 595


>gi|317506971|ref|ZP_07964740.1| DNA primase [Segniliparus rugosus ATCC BAA-974]
 gi|316254729|gb|EFV14030.1| DNA primase [Segniliparus rugosus ATCC BAA-974]
          Length = 623

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 152/643 (23%), Positives = 258/643 (40%), Gaps = 42/643 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I+ +     I+ ++G YV                 CPFHDE+TPSF    S+GFY
Sbjct: 2   IAPADIEAIRERAQIAEVVGDYVSLRAAG----HDRLTGLCPFHDERTPSFQVTPSRGFY 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
           +CF C   GD   F+  +    F+E+V+ LA      L  VD   E+      +  L+  
Sbjct: 58  HCFGCGESGDIYRFIQNMEHVGFVEAVEMLADRIKFQLTRVDDTEERSRDRGTKRRLLSA 117

Query: 121 IEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            EVA +F+   L           +L  RG D    E F  G+AP     L  HLR KGF+
Sbjct: 118 NEVAAEFYAARLMLGEEAAPAREFLKGRGFDRELAERFGCGFAPRGWDHLVRHLRSKGFA 177

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           E ++ EAGL   G       DRFR RL++PIR++  +VI FG R + + +   KYLN+PE
Sbjct: 178 ESEMEEAGLARKGQR--GLVDRFRGRLLWPIRNASREVIGFGARRIFEDDDGPKYLNTPE 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + L+    A   +               +++VEGY DV+++  AGV   V+S 
Sbjct: 236 TKLYKKSQVLFGLDQAKRDIAAK----------HQVVVVEGYTDVMAMHAAGVPTAVASC 285

Query: 299 GTALTEYQLRLLW------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           GTA     + ++            ++  FDGDD G  AA KA +     +    +    L
Sbjct: 286 GTAFGSEHIGVIRRLLLDDNSRGEVIYTFDGDDAGKAAALKAWEGDQSLVA---QTFVAL 342

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           +    DP       G+ A  +L+ + +PL++   +         T + R          +
Sbjct: 343 MPEKLDPCDTRLQLGEEALRELVAKRVPLLEFATRAAIAEFDLATAEGRVGALRRTVPMV 402

Query: 413 NHIKDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
             IKD  LR  Y++ +   +  +   + +                    GP+ R  +   
Sbjct: 403 AKIKDVALRDEYARQLAGWVGWEDTAQVLHRVREESGEKSARRPSSQGGGPAPRTQR--- 459

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            +   ++  S RE+  L  L+ HP +  EQ+  ++   +   + + +             
Sbjct: 460 -RPSSARDWSQRES--LKALLQHPKLAAEQFAGVSPTVFALPDYRAIRDGAMRAIDSAPG 516

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                  Q + E+   E L+ L  ++    + ++  +         Y  A+        +
Sbjct: 517 LEGHSWVQAVREQTDDERLRTLVAELAVEPIATSHEQMP------RYVGAVLARLELFDV 570

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             Q  E++ ++++    G   + A +   L  +      ++ Q
Sbjct: 571 EDQIAELKSELSRSEGAGGEGRVAEVFGELVALESYRRALQKQ 613


>gi|85058230|ref|YP_453932.1| DNA primase [Sodalis glossinidius str. 'morsitans']
 gi|84778750|dbj|BAE73527.1| DNA primase [Sodalis glossinidius str. 'morsitans']
          Length = 582

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 175/596 (29%), Positives = 283/596 (47%), Gaps = 42/596 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHHEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LAA  G+ +P        ++K   +  L +
Sbjct: 59  YHCFGCGTHGNAIDFLMNYDRLEFVESIEELAAQHGLDVPYETGTGPNQQKRHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++  + F+  +L+        +YL +RG+    I  F +G+AP    ++ +   +    
Sbjct: 119 LMDKLSGFYQQALQAQTASDARHYLQQRGLSEAVINHFAIGFAPPGWDNVDKRFGRSAED 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  DN   +YDRFR+R++FPIR  RG+VIAFGGR L +G+  KYLNSPET
Sbjct: 179 RASLNDAGMLVVNDNG-RTYDRFRDRIMFPIRDKRGRVIAFGGRILGEGQP-KYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQRQHPELSR----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ + R++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLYRATDRVICCYDGDRAGREAAWRALENALPYLTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFEK I ++ PL   L++        ++PD RA+L       I  +  + 
Sbjct: 347 DTLVRKIGKEAFEKYIEQAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLIGQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +           +     K  +                
Sbjct: 407 LRLYLRQQLGNKLGILDDSQLEKLLPKAALKANISPQSRIKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ HP +       +  +         L+  L      Q      ++ +
Sbjct: 452 -----RILIGLLVQHPRLSALVP-TVQGLEQAIQPGVPLFVELVQTCQAQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
              E      L+ L     +  +     EA  VD       ++  +++  L++R +
Sbjct: 506 HYRENKSYSQLETLATW--NHMIIDEMIEATFVDTLASLYDSILEHRQEALIARDR 559


>gi|308535384|ref|YP_002140483.2| DNA primase [Geobacter bemidjiensis Bem]
 gi|308052729|gb|ACH40687.2| DNA primase [Geobacter bemidjiensis Bem]
          Length = 585

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 145/635 (22%), Positives = 275/635 (43%), Gaps = 55/635 (8%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M+  P + ++++    PI  +I  Y+   +   N     Y   CPFH EKTPSF+ N ++
Sbjct: 1   MSMIPDEKVREVRERAPILQVISDYMSLRKSGAN-----YQGICPFHGEKTPSFNVNPAR 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDL 117
           G ++CF C   G+   F+  + G SF ++V+ LA   GV +P        ++K   Q   
Sbjct: 56  GIFHCFGCGAGGNSFDFVMRMEGLSFPQAVKFLAKKVGVEIPERPLSRDEKRKMDEQEQA 115

Query: 118 IRLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             + ++A +++   L++         YL +RG+D      +++G+AP    +L + L++K
Sbjct: 116 FHINDLACEYYRRVLESDEAGAAGRGYLQQRGVDQETAATYRMGFAPAGWDNLAKFLQRK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G  +E+  + GLL   +     YD FRNRL+F I    G+ I FGGR +      KY+NS
Sbjct: 176 GVPQEQAEKLGLLRKREGRDGYYDTFRNRLLFTISDLHGRAIGFGGRVM-DDSLPKYINS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE++++HK + L+    A   ++               I+VEGY D L+L +AG  NVV+
Sbjct: 235 PESVVYHKSEVLFGVDLAKKGMR----------EQGSAIVVEGYFDHLALYRAGYTNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           + GTALT   ++LL + + R  + FDGD+ G +A  ++++L    L  G     V +  G
Sbjct: 285 TCGTALTPPHVKLLRRYAERAYMLFDGDEAGRKATVRSMEL---FLEEGFPARVVEVPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPD+FIR  G  AF  L+ +SLP+ +  +    ++      + +      +   ++ I 
Sbjct: 342 DDPDTFIRREGGAAFAPLLEQSLPIFESFYLGVLKSLDIRGVEGKVAFVNEVSPRLSKIS 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D   R  Y + I   +                  +           +             
Sbjct: 402 DPVERGLYEKEICRAVGIDQAMLHKRVGIPAAAPRPQQSKAAPPRNA------------- 448

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  +  +P ++       AD  +    L+ L   + ++  +        
Sbjct: 449 -----ATEEVLLTLMAKYPEVVLRVRDHGADKLFSGAHLR-LAEAMIAEAGQG-DLDLSR 501

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + +++            + + R   L+        ++  + ++Q     +R   L    +
Sbjct: 502 VLEQIESP---------EERSRLFSLFVEDAHLEDMNAVKAFEQCCQALER-HALKGGGK 551

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            + +++A V    ++ +   +++ L  +  +  ++
Sbjct: 552 ALARELATVDP--DSPRYLEILAELERLRNKKSKL 584


>gi|227544907|ref|ZP_03974956.1| DNA primase [Lactobacillus reuteri CF48-3A]
 gi|300910066|ref|ZP_07127526.1| DNA primase [Lactobacillus reuteri SD2112]
 gi|227185119|gb|EEI65190.1| DNA primase [Lactobacillus reuteri CF48-3A]
 gi|300892714|gb|EFK86074.1| DNA primase [Lactobacillus reuteri SD2112]
          Length = 621

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 159/646 (24%), Positives = 280/646 (43%), Gaps = 41/646 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR+ I ++   + I ++IG+YV   +   N         CPFHDEKTPSF  N+ K F
Sbjct: 3   KIPRNVIDEIRNSVDIGDVIGRYVQLHQAGKNL-----IGLCPFHDEKTPSFSVNEEKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           +YCF CH  G+   FL  L    F+++V+ +A  + + +P        +        L  
Sbjct: 58  FYCFGCHRSGNVFQFLMELKHIDFVDAVKEIANDSNIKIPEQYVSVPAKPLNNENRQLFD 117

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L + A   +HH L      +    YL +RG+    IE F LGYAPD R  L+   +Q+  
Sbjct: 118 LHDKAAKLYHHILVNTPAGQVALNYLKKRGMSEELIEQFGLGYAPDQR-ILKPFFQQQKV 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLNS 236
             + + ++GL  +        DRF  R+++PI++ +GQVIAF GR +   ++   KYLNS
Sbjct: 177 DYQLLRKSGLFSEDQQG-ELRDRFIERIMYPIKNGQGQVIAFSGRLIDTSKTNLPKYLNS 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F+K + L+NF  A    +K  R          + L EG+MDV+S   AG++N ++
Sbjct: 236 PETPIFNKRRTLFNFDVARKAARKDGR----------LYLFEGFMDVISAFAAGIENGIA 285

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S+GT+ TE Q+ ++ + + ++ +C+DGD PG  A  +AI LV  H     +V  V L  G
Sbjct: 286 SMGTSFTEEQVAIIGRATRQLDICYDGDQPGQNAIDRAISLVNDHRPNQLQVKVVQLPAG 345

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPD +++ YG   F   L  +     +   +     ++ +  +E  +        I  +
Sbjct: 346 IDPDEYVQKYGPQQFNAYLTNKEETTTEFYLRFLRNGKNLDNQNELMQYLNQALKVIAQV 405

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ------RLMQS 469
           +       Y Q +    +   Q   T+     +    + +   ++ PS       +    
Sbjct: 406 QVPLEEDMYLQRLAGEFKLDRQTLKTQLDQLRQQLGIHNQPWIKQQPSLARHQQFQQTSE 465

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              +     +  L E  LL  ++    +      +  +  + + + Q L+    S F E 
Sbjct: 466 EEQQKIKLSRTELAEQILLRYMLYDREVWMHVTAD-HNFHFAHEKYQTLYLLAASYFSEN 524

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
             +   +    L E      L Q++    D  +             +     + +     
Sbjct: 525 GSYSTADFLDYLDESSLQGTLGQIENLNVDQEVDM-----------RAIDDCIHMIVEQT 573

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            L+ Q  + + Q+ +  +    E    L   L ++  Q  +++++E
Sbjct: 574 PLAAQIADKQAQLKEANSLHNTELATQLTIELVKLLKQQQRLKTEE 619


>gi|313675045|ref|YP_004053041.1| DNA primase [Marivirga tractuosa DSM 4126]
 gi|312941743|gb|ADR20933.1| DNA primase [Marivirga tractuosa DSM 4126]
          Length = 640

 Score =  364 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 171/653 (26%), Positives = 286/653 (43%), Gaps = 42/653 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M      I+++     I  ++G YV   ++  N      WACCPFHDEKTPSF    +KG
Sbjct: 1   MGLSPKTIQEVQDRAEIEEVVGDYVPLKKKGQN-----MWACCPFHDEKTPSFSVAPNKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118
            Y CF C   GD + F+  L G +F E++++LA   G+ +      P+ ++    +  L 
Sbjct: 56  IYKCFGCGKAGDSIQFIMDLEGLNFPEAIRQLADKYGIEIEETESSPEQQEAYNERESLY 115

Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            ++  A ++F   L N  + +     Y  ERG     IE F LG+  D    L +  +  
Sbjct: 116 IVLNFAAEYFKDLLHNHPEGKSIGLSYFKERGFSHATIEEFDLGFTLDQWDGLIKAAKAA 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235
           G SEE + +AGL+I       +YDRFRNR+IFPI S  G+ IAFG R L    +  KY+N
Sbjct: 176 GHSEELLEKAGLIIK--KEDKTYDRFRNRVIFPIHSISGKPIAFGARILINDKKQPKYIN 233

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET ++HK + LY    A   ++                LVEGY DV+SL Q+GV+NVV
Sbjct: 234 SPETDVYHKSEVLYGIAQAKKSIR----------DEENCYLVEGYTDVISLHQSGVENVV 283

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GT+LT  Q++L+ + +  + + FDGD  GL+AA + IDL    L  G  V  V+   
Sbjct: 284 ASSGTSLTTQQIKLIGRYAQNVTVLFDGDAAGLKAAMRGIDL---ILEGGLNVKVVIFPD 340

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPDS+ +  G  AF+  + E+               +   P ++AE    +   I+ I
Sbjct: 341 GEDPDSYSQKMGDEAFKSFLKENAKDFIRFKSDLLLEETKQDPIKKAETIQDIVRSISKI 400

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            D   R  Y +   D L+      I E +      K++     ++  +      S    +
Sbjct: 401 PDPVKRAIYIKECSDILEIDEALLIAEQNKVVLREKESKGDITKRQANYLSESFSQAPEQ 460

Query: 476 LSKKP------SLREAALLLTLINHPAI--------LQEQYQELADIRYDNNELQKLWSF 521
           + K+       +L+E   +  L+ +  +        +    QEL+D  + +    ++   
Sbjct: 461 IQKQYTPFDVAALQERESIRLLLTYAELPLADDKLVIDYLLQELSDTDFIHPVYAEILED 520

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
             S   +          +   E     +      +   +  W    E      R     +
Sbjct: 521 FVSHLKDGTILNESHFIKNGSEEVRKVIFSLYTDRYELSENWEKKFEIYTPHERHILNDS 580

Query: 582 LA---LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +    L  + R +    ++  +++    ++ + +     +  L++  ++I  +
Sbjct: 581 IYIHVLRLKHRSILHLIDKNTEKLKDSVSQEDEQIILQYLMQLNQAKMEIGNL 633


>gi|322831340|ref|YP_004211367.1| DNA primase [Rahnella sp. Y9602]
 gi|321166541|gb|ADW72240.1| DNA primase [Rahnella sp. Y9602]
          Length = 582

 Score =  364 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 178/628 (28%), Positives = 296/628 (47%), Gaps = 53/628 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL  I I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARIDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMQGLEVPYEAGTGPSQMERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+   ++F+  SLK A       YL  RG+    I  F +G+AP    +  +   +    
Sbjct: 119 LMAPLSEFYQQSLKQAAGAPAREYLARRGLSEDVISHFAIGFAPPGWDNALKRFGKNADD 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  +I+AG+L+  +++  SYDRFR R++FPIR  RG+VIAFGGR L    + KYLNSPET
Sbjct: 179 KASLIDAGMLV-TNDNGRSYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A           ++  + + +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEA----------QLKHPTPARLLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++L+++ +  IV C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLMFRSTDNIVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ + +++PL   L+         ++PD R +L +     I  +  + 
Sbjct: 347 DTLVRKEGKEAFEQRMEQAMPLSTFLFDSLLPQVDLSSPDGRTKLSMLALPLIRQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + ++L  L    + +            +    K  +                
Sbjct: 407 LRMYLRQQLGNKLGILDDSQLEKLMPKQAESSNVYQAPQLKRTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +           +     L  L+S L +  + Q      ++ +
Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGLEQAKQPGLD-LFSELVTTCLAQPGLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              +  F + L+ L                 + D+ +   +A        +L ++ E + 
Sbjct: 506 LYRDNKFYQQLETLATW----------NHMIVEDMVEEEFRATLASLYDSILEQRLETL- 554

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627
             IA+    G + +    +S L++V  +
Sbjct: 555 --IAKARTHGLSPEERTEVSSLNQVLAR 580


>gi|312140268|ref|YP_004007604.1| DNA primase dnag [Rhodococcus equi 103S]
 gi|325676985|ref|ZP_08156656.1| DNA primase [Rhodococcus equi ATCC 33707]
 gi|311889607|emb|CBH48924.1| DNA primase DnaG [Rhodococcus equi 103S]
 gi|325552147|gb|EGD21838.1| DNA primase [Rhodococcus equi ATCC 33707]
          Length = 643

 Score =  364 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 143/662 (21%), Positives = 249/662 (37%), Gaps = 44/662 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +     I +++G+YV   R             CPFHDEK+PSFH   + G 
Sbjct: 5   RIPDRDIAAVRERTRIEDIVGEYVSLKRAG----GDSMKGLCPFHDEKSPSFHVRPNHGH 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           ++CF C   GD  SFL  +   SF+E+V++LA   G  +      P +++    +  L+ 
Sbjct: 61  FHCFGCGEGGDVYSFLQKIEHVSFVEAVEQLADRIGYQISYEGGGPSVQRDRGTRARLVA 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A +F+   LK    +    YL ER  D+ A   F  GYAPD   +L +HL  KGF 
Sbjct: 121 ANAAAQEFYAARLKEPDAQAARDYLTERNFDAAAAAQFGCGYAPDGWDTLTKHLMAKGFE 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            +++  AGL  +        DRF  RL++PIR+  G VI FG R L   +++  KY+N+P
Sbjct: 181 AKELEAAGLSKE--GRRGPIDRFHRRLLWPIRNLAGDVIGFGARKLFDDDTMPGKYVNTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ETIL+ K   L+    A   + K              ++VEGY DV+++  AGV+  V+S
Sbjct: 239 ETILYKKSNVLFGLDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVKTAVAS 288

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV----NFVLL 353
            GTA  +  L +L +L                         +       ++       + 
Sbjct: 289 CGTAFGDEHLAMLRRLLMDDSYFRGEVIYTFDGDAAGQAAAMKAFEGDQKMAGQTFVAIA 348

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP    +  G  A   L+    P+ + + K        +T + R E        + 
Sbjct: 349 PDGMDPCELRQKSGDAAVRDLVARRTPMFEFVVKSLLAEHDLDTAEGRVEALRRTVPVVA 408

Query: 414 HIKDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ---- 468
            IK+  LR  Y+  +   +                R + +       K       Q    
Sbjct: 409 RIKEPTLRDGYAVQLSGWVGWDDIPAVRRRVRDEARKFARGGGAPAAKRRPVDPAQVEAF 468

Query: 469 ----SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 + + + +      +   L   + +PAI    +  L    + +     +   + +
Sbjct: 469 PAPAPGIARPRPNDPALWPQRDALKAALQYPAIAGTVFDSLPPESFTHPAYAAVREAVAA 528

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                      E    +        +  +  ++    L          DV   Y + +  
Sbjct: 529 AGGTSAGLGGAEWVDAVGRAAGEGTVHSIVMELAVDPLP------TDEDVAPRYIRGVLA 582

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
             +   +  Q  E++ ++ +++   ++++   L+  L  +      +  Q A+    G  
Sbjct: 583 RLQEVWVGEQVAELKSKLQRISPTTDSDEFHSLLGDLVALEQYRRSLLDQ-AI----GDT 637

Query: 645 SG 646
           SG
Sbjct: 638 SG 639


>gi|318058873|ref|ZP_07977596.1| DNA primase [Streptomyces sp. SA3_actG]
 gi|318081200|ref|ZP_07988532.1| DNA primase [Streptomyces sp. SA3_actF]
          Length = 628

 Score =  364 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 143/652 (21%), Positives = 264/652 (40%), Gaps = 54/652 (8%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +   +PI +++ +Y+           G+    CPFHDEK+PSF  + +KG ++CF C   
Sbjct: 4   VRDAVPIDSVVAEYLQLKNAG----GGNLKGLCPFHDEKSPSFQVSPAKGLFHCFGCQEG 59

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRLIEVATDFF 128
           GD ++F+  +   SF E+V+RLA  AG+ L   +      ++   +  LI     A  ++
Sbjct: 60  GDTITFVMKVDHLSFSEAVERLAGQAGITLRYEEGGYNPTQQRGERIRLIDAHRAAAKYY 119

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
              L     +    +L ERG D  A   F +GY+P     L  +LR +GF++ ++I +GL
Sbjct: 120 EEQLAGPEAEIGRKFLAERGFDQSAAAHFGVGYSPAGWDHLTRYLRGQGFTDRELITSGL 179

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGKN 247
                      DRFR RL++PI+   G ++ FG R L + ++  KYLN+PET ++ K + 
Sbjct: 180 -SQESRGGRPIDRFRGRLMWPIKDIGGDIVGFGARRLREDDNGPKYLNTPETPVYRKSQV 238

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           LY    A   + ++ R           ++VEGY DV++   +GV   V++ GTA     +
Sbjct: 239 LYGIDLAKKDIARASRA----------VVVEGYTDVMACHLSGVTTAVATCGTAFGTEHI 288

Query: 308 RLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           ++L +L       R++  FDGD  G +AA +A +               +     DP   
Sbjct: 289 KILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIAPDNMDPCDL 345

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
               G+ A  +L+   +PL +   ++        TP  RA         +  +K+  LR+
Sbjct: 346 RLAKGEQAVAELVEPRVPLFEFALRQIVSRYDLETPAGRAAALDEAAPVVASVKNVALRH 405

Query: 423 YYSQAIRDRLQ------QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
             +  +   L       Q   + +   + + R  +        + P+     +    G  
Sbjct: 406 AVAVQLAGMLGYGPMDQQEVVRRVATVARWAREHRGEPLPGGPRRPATATSGAPQRPGNS 465

Query: 477 SKKPSLR------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
                LR      E  LL   +  P ++   +       +       +   +      ++
Sbjct: 466 GPALILRNPAHMTERELLKLALQRPELVSPAFDAYEIDEFTAEPYAAVRQAIADAGGAEE 525

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-- 588
                              L  +     D  + +  TE  +  +R+     +   ++   
Sbjct: 526 GVHDAM-----------AYLTAVREAAPDDRVRAMVTELAVEPIRRRVVDEIYASEQLVR 574

Query: 589 ---RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
              R + R+  E++    +V+A+G+  + A + S L  +      ++ Q A 
Sbjct: 575 VRVRAVQRRVTELQGTFTRVSAQGDQARAAEVQSELWVLEQYGRALQQQGAA 626


>gi|218889318|ref|YP_002438182.1| DNA primase [Pseudomonas aeruginosa LESB58]
 gi|218769541|emb|CAW25301.1| DNA primase [Pseudomonas aeruginosa LESB58]
          Length = 664

 Score =  364 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 183/678 (26%), Positives = 297/678 (43%), Gaps = 87/678 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I  ++   +   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVEVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLIR 119
           YCF C   G+ L F+       F ++V+ LA  AG+ +P  +        ++   + L  
Sbjct: 60  YCFGCGAGGNALGFVMDHDQLEFPQAVEELAKRAGMDVPREERGGRGHTPRQPTDSPLYP 119

Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL     
Sbjct: 120 LLSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNL 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             + +++AGLL++  ++   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPE
Sbjct: 180 QLKAMLDAGLLVENSDTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG+ LY  + A    +              I++VEGYMDV++L Q G++N V++L
Sbjct: 239 TPVFHKGQELYGLYEARQKNRDL----------DEIMVVEGYMDVIALAQQGIRNAVATL 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +E  ++ L++L P I+ CFDGD  G +AA++A++ VL +L  G RV F+ L  GED
Sbjct: 289 GTATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGED 348

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PDS +R  G+ AF   +  ++ PL +  +++        T + +A L       +  I  
Sbjct: 349 PDSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIPG 408

Query: 418 QKLRYYYSQAIRDRLQ-----------------------------------------QLF 436
             LR    Q + +                                            +L 
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDHGASGALDGDDYLAASAYYENELS 468

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--------GKLSKKPSLREAA-- 486
                   GYG    + + ++D+K    +                    + P   E+   
Sbjct: 469 HAPFDAAPGYGEAQPRKSWNKDKKPWDGKKWDGKKKWDKGGRGDFKTPQRTPVSVESTTL 528

Query: 487 -LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L TL++HP +  +       +  + +   +L   L     +       ++  R     
Sbjct: 529 NALRTLLHHPQLALKVDDA-GTLAREQDTYAQLLVSLLEALQKNPRQSSMQLIARWHGTP 587

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
            G LL+ L  +                ++ + +   +         S++  E E+++  V
Sbjct: 588 QGRLLQALGEKEWLIVQ---------ENLEKQFFDTITKLSE----SQRFGEREERLRSV 634

Query: 606 TAKGEAEKTAILISILHE 623
             K  +E T    ++L E
Sbjct: 635 MQKSYSELTDEEKALLRE 652


>gi|322421612|ref|YP_004200835.1| DNA primase [Geobacter sp. M18]
 gi|320127999|gb|ADW15559.1| DNA primase [Geobacter sp. M18]
          Length = 585

 Score =  364 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 148/635 (23%), Positives = 281/635 (44%), Gaps = 55/635 (8%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M+  P + ++++    PI  ++  Y+   +   N     Y   CPFH EKT SF+ N ++
Sbjct: 1   MSMIPDEKVREVRERAPILQVVSDYMSLKKSGAN-----YQGVCPFHGEKTASFNVNPAR 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDL 117
           G ++CF C V G+ + F+  + G SF ++V+ LA   GV +P      + ++K   Q   
Sbjct: 56  GIFHCFGCGVGGNAVDFVMRMEGISFPQAVKFLAKKVGVEIPERPLTREEKRKVDEQDQA 115

Query: 118 IRLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            ++ E+A +F+   L++         YL++RG+D      +++G+AP    +L  +LR+K
Sbjct: 116 YQINELACEFYRRVLESDEAGAAGRAYLEKRGVDRDTAATYRMGFAPAGWGNLTSYLRRK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G   + + + GLL   +     YD FRNRL+F I    G+ I FGGR +      KY+NS
Sbjct: 176 GIPLDAVEKLGLLRKREGKDGYYDTFRNRLLFTIADLHGRAIGFGGRVM-DDSLPKYINS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+I++ K + L+    A   ++               I+VEGY D L+L +AG  NVV+
Sbjct: 235 PESIVYRKSEVLFGVDLAKKGMR----------EKGSAIVVEGYFDHLALYRAGFTNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           + GTALT+  ++LL + + R  + FDGD+ G +A  ++++L    L        V +  G
Sbjct: 285 TCGTALTQPHVKLLRRYADRAYMLFDGDEAGRKATVRSMEL---FLEEAFPARVVEVPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPD+FI   G  AF+ L+ ++LP+ +  ++   ++      + +      +   +  I 
Sbjct: 342 DDPDTFINREGGVAFQPLLDKALPIFESFYRGILKSLDVRGVEGKVAFVNEVSPRLQKIA 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D   R  Y + I   +       + +     R      + +     +             
Sbjct: 402 DPVERGLYEKEICRAVGIDRAMLLRKVGIPAREQGPRPQPKGAPKQTGT----------- 450

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  ++ +P ++       AD  +      KL   + +   E    LP  
Sbjct: 451 -------EEVLLTLMVKYPEVVLRVRDHGADKLFS-ASHLKLVQAILAQSEEGDLDLPLV 502

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +          E ++  + + R   L+        +D  + ++Q     +R R L    +
Sbjct: 503 L----------EQIESHEERSRLYSLFVEDAHLEDLDPVKAFEQCCQALER-RALKGDGK 551

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            + +++       ++ +   +++ L  +  +  ++
Sbjct: 552 ALAREL--AMVDPDSPRYLEVLAELERLRNKKSKL 584


>gi|313111778|ref|ZP_07797571.1| putative DNA primase [Pseudomonas aeruginosa 39016]
 gi|310884073|gb|EFQ42667.1| putative DNA primase [Pseudomonas aeruginosa 39016]
          Length = 664

 Score =  364 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 182/678 (26%), Positives = 296/678 (43%), Gaps = 87/678 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I  ++   +   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVEVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLIR 119
           YCF C   G+ L F+       F ++V+ LA  AG+ +P  +        ++   + L  
Sbjct: 60  YCFGCGAGGNALGFVMDHDQLEFPQAVEELAKRAGMDVPREERGGRGHTPRQPTDSPLYP 119

Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL     
Sbjct: 120 LLSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNL 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             + +++AGLL++  ++   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPE
Sbjct: 180 QLKAMLDAGLLVENSDTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG+ LY  + A    +              I++VEGYMDV++L Q G++N V++L
Sbjct: 239 TPVFHKGQELYGLYEARQKNRDL----------DEIMVVEGYMDVIALAQQGIRNAVATL 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +E  ++ L++L P I+ CFDGD  G +AA++A++ VL +L  G RV F+ L  GED
Sbjct: 289 GTATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGED 348

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PDS +R  G+ AF   +  ++ PL +  +++        T + +A L       +  I  
Sbjct: 349 PDSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIPG 408

Query: 418 QKLRYYYSQAIRDRLQQLFQKYIT------------------------------------ 441
             LR    Q + +      +                                        
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDHGASGTLDGDDYFAASAYYENEPS 468

Query: 442 -----EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--------GKLSKKPSLREAA-- 486
                   GYG    + + ++D+K    +                    + P   E+   
Sbjct: 469 HAPFDAAPGYGEAQPRKSWNKDKKPWDGKKWDGKKKWDKGGRGDFKAPQRTPVSVESTTL 528

Query: 487 -LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L TL++HP +  +       +  + +   +L   L     +       ++  R     
Sbjct: 529 NALRTLLHHPQLALKVDDA-GTLAREQDTYAQLLVSLLEALQKNPRQSSMQLIARWHGTP 587

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
            G LL+ L  +                ++ + +   +         S++  E E+++  V
Sbjct: 588 QGRLLQALGEKEWLIVQ---------ENLEKQFFDTITKLSE----SQRFGEREERLRSV 634

Query: 606 TAKGEAEKTAILISILHE 623
             K  +E T    ++L E
Sbjct: 635 MQKSYSELTDEEKALLRE 652


>gi|315604743|ref|ZP_07879806.1| DNA primase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313755|gb|EFU61809.1| DNA primase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 656

 Score =  364 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 151/668 (22%), Positives = 259/668 (38%), Gaps = 63/668 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I+ +   + I  +IG++V           G     CPFHDE+TPSF+     G Y
Sbjct: 5   IRKDDIEAVRNALKIDEIIGEHVALKPAG----IGSLKGLCPFHDERTPSFNVRPHLGMY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119
           +CF C   GD +SF+  +    F+E+V+ LAA AG+ L   +     + +    +  L+ 
Sbjct: 61  HCFGCGESGDVISFVQKIDHLPFMEAVEMLAAKAGITLHYEEGGARVRTEEPGKRQRLLD 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              VA +F+   L +        +L +RG        F +GYAP S  +L  HLR KGF+
Sbjct: 121 AHRVAEEFYQAQLASPEAHAGRQFLADRGFSQSMCAHFGVGYAPASWDALTRHLRSKGFT 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG--ESVKYLNSP 237
           +++I  AGL      +   YDRFR RL++PIR   G  + FG R L +   +S KYLN+P
Sbjct: 181 DQEIQIAGLASQ--GTRGIYDRFRGRLVWPIRDITGATVGFGARRLDESEKDSPKYLNTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++ K + LY    A   +    R          +++VEGY DV++   AGV N V++
Sbjct: 239 ETPIYKKSQLLYGLDLAKKSIATDHR----------VVIVEGYTDVMAAHVAGVTNAVAT 288

Query: 298 LGTALTEYQLRLLWK-------------------LSPRIVLCFDGDDPGLRAAYKAIDLV 338
            GTA     +R++ +                       ++  FDGD  G +AA +A    
Sbjct: 289 CGTAFGSEHVRIIRRLLGDHADPAAGVLLSSGRAHGSEVIFTFDGDSAGRKAALRAYGED 348

Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398
                   +    +   G+DP       G  A   L+    PL +   +         + 
Sbjct: 349 QNFAA---QTFVAVAPGGQDPCELRLSAGDQAVVDLVNSRTPLFEFAIRSVLAQMDLRSA 405

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW--KKNARH 456
           + R +        + HIKD+ LR  Y++A+   L    +          R    +  AR 
Sbjct: 406 EGRVQGLRASAGIVAHIKDRALRAEYTRALAGWLGMDMRSVEQAIRVAARTQASEHEARP 465

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP-AILQEQYQELADIRYDNNEL 515
              +         +  +       +  E   L  ++  P A++   ++EL    +     
Sbjct: 466 GAVEMAGAGRPAPNPERRGPEDPVTRVERQALEAVLQQPLAVVGSGFEELDGQSFTVPTH 525

Query: 516 QKLWSFL-----FSDFVE---------QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
           + +   +        F +                    R   +   E   +         
Sbjct: 526 RAVHDAIRAVGGLDAFTQMMRQAEAHFGPGENATAAASRHFVQVVLESAGEFIAPAVTQL 585

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
             +    A   D+R   +  +A   R   L+R+  E    ++++ ++ + E  +     L
Sbjct: 586 AVAPLPVAGEADLRSYCRGVVAAMVRM-DLTRKLGEARAHLSRM-SEEDPE-YSEAFRSL 642

Query: 622 HEVHIQIH 629
             +  +  
Sbjct: 643 MRLEQRRQ 650


>gi|107099563|ref|ZP_01363481.1| hypothetical protein PaerPA_01000576 [Pseudomonas aeruginosa PACS2]
 gi|116054305|ref|YP_788750.1| DNA primase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115589526|gb|ABJ15541.1| putative DNA primase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 664

 Score =  364 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 182/678 (26%), Positives = 296/678 (43%), Gaps = 87/678 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I  ++   +   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVEVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLIR 119
           YCF C   G+ L F+       F ++V+ LA  AG+ +P  +        ++   + L  
Sbjct: 60  YCFGCGAGGNALGFVMDHDQLEFPQAVEELAKRAGMDVPREERGGRGHTPRQPTDSPLYP 119

Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL     
Sbjct: 120 LLSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNL 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             + +++AGLL++  ++   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPE
Sbjct: 180 QLKAMLDAGLLVENSDTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG+ LY  + A    +              I++VEGYMDV++L Q G++N V++L
Sbjct: 239 TPVFHKGQELYGLYEARQKNRDL----------DEIMVVEGYMDVIALAQQGIRNAVATL 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +E  ++ L++L P I+ CFDGD  G +AA++A++ VL +L  G RV F+ L  GED
Sbjct: 289 GTATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGED 348

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PDS +R  G+ AF   +  ++ PL +  +++        T + +A L       +  I  
Sbjct: 349 PDSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIPG 408

Query: 418 QKLRYYYSQAIRDRLQQLFQKYIT------------------------------------ 441
             LR    Q + +      +                                        
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDHGASGVLDGDDYFAASAYYENEPS 468

Query: 442 -----EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--------GKLSKKPSLREAA-- 486
                   GYG    + + ++D+K    +                    + P   E+   
Sbjct: 469 HAPFDAAPGYGEAQPRKSWNKDKKPWDGKKWDGKKKWDKGGRGDFKAPQRTPVSVESTTL 528

Query: 487 -LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L TL++HP +  +       +  + +   +L   L     +       ++  R     
Sbjct: 529 NALRTLLHHPQLALKVDDA-GTLAREQDTYAQLLVSLLEALQKNPRQSSMQLIARWHGTP 587

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
            G LL+ L  +                ++ + +   +         S++  E E+++  V
Sbjct: 588 QGRLLQALGEKEWLIVQ---------ENLEKQFFDTITKLSE----SQRFGEREERLRSV 634

Query: 606 TAKGEAEKTAILISILHE 623
             K  +E T    ++L E
Sbjct: 635 MQKSYSELTDEEKALLRE 652


>gi|309811083|ref|ZP_07704881.1| DNA primase [Dermacoccus sp. Ellin185]
 gi|308435047|gb|EFP58881.1| DNA primase [Dermacoccus sp. Ellin185]
          Length = 661

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 161/674 (23%), Positives = 276/674 (40%), Gaps = 64/674 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I  +   + I +++ ++V   R       G     CPFHDEKTPSF    + G Y
Sbjct: 5   IKAEDIAAVKDRVNIEDVVSEHVTLRRAGA----GSLKGLCPFHDEKTPSFTVRPAVGVY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
           +CF C   GD +SF+      SF ESV+RLAA AG+ L   + +   +E    +  L+  
Sbjct: 61  HCFGCGQSGDVISFVMETEHLSFTESVERLAAKAGMVLRYEEGERPDREPPGRRMRLVET 120

Query: 121 IEVATDFF-HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             VA +F+    L++   +    +L  +G D  A + F +G+AP +  +L  HLR KGFS
Sbjct: 121 HRVAEEFYTEALLRDPSARAGRDFLRAKGFDGKAAQHFGVGFAPRTGDALTAHLRAKGFS 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            E++  AGL+  G +S   YDRFR R+++PIR   G  + FG R + + + +  KYLN+ 
Sbjct: 181 PEEMTTAGLV--GQSSRGLYDRFRGRVVWPIRDITGDTVGFGARRIFEDDRIEAKYLNTS 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++ K   LY    A   + +  R           ++VEGY DV++   AGV N V++
Sbjct: 239 ETPIYKKTHVLYGLDLAKKTIARERRA----------VVVEGYTDVMAAHLAGVDNAVAT 288

Query: 298 LGTALTEYQLRLLWKLSP--------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
            GTA     ++ L ++          R++  FDGD  G +AA KA D         ++  
Sbjct: 289 CGTAFGVDHIKSLRRIMRDEAGGTPARVIFTFDGDAAGQKAAMKAFDEDQRWA---SQSF 345

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
             +   G DP       G  A   LI +++P+ +   +        +  + R      + 
Sbjct: 346 VAVAKDGMDPCDLRLRQGDEAVRGLIEDAVPMFEFAVRTTIAGFDLDHAEGRVAAMRAVA 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKY-----------ITEHSGYGRYWKKNARHRD 458
             I  I+DQ LR  Y + +   +    ++            ++E     R     A  + 
Sbjct: 406 PIIAGIRDQTLRPEYVRTVAGWIGVEIEQLSAAVRTAPRGKLSERRPPRREGLPAASWQG 465

Query: 459 QKGPSQ----------------RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ-EQ 501
            + PS                    + S+ K          E  LL  ++ +P  L+   
Sbjct: 466 SQQPSSGPGGGQREGQGVSEAAEPQRPSIPKPNPRDPSIAGERQLLQVMLQYPESLKGTV 525

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
           + +L    +     Q + +                 ++ +  RG    L  +  ++    
Sbjct: 526 FDQLVPGDFSAPAHQLILAAAIGAGGPGSVASIGAWNEAVR-RGTDPQLHDVLNELVVRD 584

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILIS 619
           L +   EA      + Y  AL    +   LS    +   Q+ ++     G A+ +    +
Sbjct: 585 LPTKLDEAT-GRPDERYVAALIQNVQEGALSSAIADAMGQLRRLDPNAPGYADASRAASA 643

Query: 620 ILHEVHIQIHQIES 633
            L ++  Q++ +  
Sbjct: 644 RLFQLQTQLNALRE 657


>gi|313123890|ref|YP_004034149.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280453|gb|ADQ61172.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 612

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 151/640 (23%), Positives = 281/640 (43%), Gaps = 40/640 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               DFI ++   + I ++I QYV  ++R       DY   CPFH EKTPSF  N  K F
Sbjct: 4   RISEDFINEVRGSVNIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFSVNPDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           +YCF CH  G+   F+      +F ESV+R+A  A +P+P    +   K      L+++ 
Sbjct: 59  FYCFGCHKGGNVYKFIMEKEEVTFPESVERVAEFANIPMPQEYQEQPVKLNP---LMQMH 115

Query: 122 EVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A DF+   L      +R   Y  +RG+D   ++ FK+GYAP     L  +LR +G+++
Sbjct: 116 KEAADFYQQVLMTTKIGERGLEYARKRGLDDDLLKHFKIGYAPGKSDLLLTYLRGEGYTD 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239
           +++ E+GL +   +    +DRFR+RL+FP+    G  +AF GR +S   E  KYLNSPET
Sbjct: 176 DQLAESGLFVKSQDG-RLFDRFRDRLMFPMSDENGHPVAFSGRRISDDPEEPKYLNSPET 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K   L++F  A  + +K             ++L EG+MDV+S  +AGV+  ++S+G
Sbjct: 235 SIFNKSDLLFHFSEAKKHARK----------EGHLVLFEGHMDVISAYKAGVKTGIASMG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ ++ +++ ++V+ +DGDDPG  A  +A+ L          +  V+L    DP
Sbjct: 285 TSLTQQQVYMIRRITKQVVINYDGDDPGQHATERAVGLFKQAGNFDLGI--VILPDKLDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG  +++  I  ++   D   +R  +  + N   E+          I  + +  
Sbjct: 343 DEYVKQYGSDSYQAAIRGAISTTDFFLQRLKKKYNLNNEREQVAYLSEAVAEIAALPNPV 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y   +               S   R  ++  +H   +   +    +     +   +
Sbjct: 403 EQDLYVGRLAKETGVSLDALKVNLSRARRKQRRVDQHISSEVLPELAPLAPAADPQPVTR 462

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               +  LL   I            +    + N E ++L     +     +         
Sbjct: 463 ALKAQQRLLYAYIYSDEARDYL--NVNGFVFPNPEYERLAKLWLNYIETHENVSLSGFLD 520

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            + E           + +  +   +       ++  +   + L L K    + R      
Sbjct: 521 FIPEE---------LQSIIVSTDMTGLPGKITLEELEAQVRVLNLCKIDDEIDRHM---- 567

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + IA    + +     +    +  + ++  +++ +EA+ +
Sbjct: 568 QAIADARRRNDQTAILLETQAI--LQLRQLKLQEEEAVSD 605


>gi|108800408|ref|YP_640605.1| DNA primase [Mycobacterium sp. MCS]
 gi|119869537|ref|YP_939489.1| DNA primase [Mycobacterium sp. KMS]
 gi|108770827|gb|ABG09549.1| DNA primase [Mycobacterium sp. MCS]
 gi|119695626|gb|ABL92699.1| DNA primase [Mycobacterium sp. KMS]
          Length = 640

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 142/651 (21%), Positives = 255/651 (39%), Gaps = 40/651 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +   + I +++G YV   R             CPFHDEK+PSFH   + G 
Sbjct: 4   RIPDRDIAAIRERVRIEDVVGDYVQLRRAGA----DSLKGLCPFHDEKSPSFHVRPNHGH 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118
           ++CF C   GD  +F+  +   SF+ESV+ LA   G  +      +  +++    ++ L+
Sbjct: 60  FHCFGCGEGGDVYAFVQKIEHVSFVESVELLADRIGYTVTYTGASNTNVQRDRGSRSRLL 119

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
                A +F+  +L +        YL ER  D+ A   F  G+AP     L +HL +KGF
Sbjct: 120 AANAAAQEFYAEALTSDEAAPARQYLIERNFDAQAAARFGCGFAPSGWDKLTKHLLRKGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
             +++  AGL  +        DRF  RL++PIR++ G+VI FG R +   + +  KY+N+
Sbjct: 180 EFKELEAAGLARE--GKRGPMDRFHRRLLWPIRAAGGEVIGFGARRIFDDDQMEAKYVNT 237

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET+L+ K   L+    A   + KS R           ++VEGY DV+++  A     V+
Sbjct: 238 PETVLYKKSAVLFGLDLAKRDIAKSHRA----------VVVEGYTDVMAMHLANETTAVA 287

Query: 297 SLGTALTEYQLRLLWK-----LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           S GTA  E  L LL +        R  L F  D      A           + G     V
Sbjct: 288 SCGTAFGEGHLALLRRLMMDDNWYRGELIFVFDGDAAGQAAALKAFDGDQQVAGKSFVAV 347

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE--RAELEIHLK 409
             + G DP       G  A   L+   +P+ +   +           D   + E      
Sbjct: 348 -AADGMDPCDLRLKSGDNALRDLVARRIPMFEFAIRSLIPAGDVLDNDPAAQVEALRRCV 406

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
             ++ I+D  LR  Y++ +          Q+  +   E +  G   +   R+     P+Q
Sbjct: 407 PLVSRIRDYALRDEYARRLAGWTGWADEAQVLNRVREEAAKRGMPDRGRRRNGADAAPAQ 466

Query: 465 RLMQSSLVKGKLSKKPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                 +        P+L  +   L + + +PA+    +  LA   + +   + + + + 
Sbjct: 467 PRRAPDVAARPDPADPTLWPQREALKSALQYPALAGPVFDALAVDSFTHPGYRAVRTAIE 526

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           +           +  + + E+        L  ++    +     +         Y   + 
Sbjct: 527 AAGGAAAGLSGAQWIEVVREQTASPQAANLVNELSVEAIRVEDDDKLP-----RYIGGVL 581

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              +   + RQ  E++ ++ +++   + ++   L   L  +      +  Q
Sbjct: 582 ARLQEVWVGRQIAEVKSKLQRMSPVEQGDEYHALFGDLVAMEAYRRSLLEQ 632


>gi|254237207|ref|ZP_04930530.1| DNA primase [Pseudomonas aeruginosa C3719]
 gi|126169138|gb|EAZ54649.1| DNA primase [Pseudomonas aeruginosa C3719]
          Length = 664

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 182/678 (26%), Positives = 296/678 (43%), Gaps = 87/678 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I  ++   +   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVEVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLIR 119
           YCF C   G+ L F+       F ++V+ LA  AG+ +P  +        ++   + L  
Sbjct: 60  YCFGCGAGGNALGFVMDHDQLEFPQAVEELAKRAGMDVPREERGGRGHTPRQPTDSPLYP 119

Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL     
Sbjct: 120 LLSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDTL 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             + +++AGLL++  ++   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPE
Sbjct: 180 QLKAMLDAGLLVENSDTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG+ LY  + A    +              I++VEGYMDV++L Q G++N V++L
Sbjct: 239 TPVFHKGQELYGLYEARQKNRDL----------DEIMVVEGYMDVIALAQQGIRNAVATL 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +E  ++ L++L P I+ CFDGD  G +AA++A++ VL +L  G RV F+ L  GED
Sbjct: 289 GTATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGED 348

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PDS +R  G+ AF   +  ++ PL +  +++        T + +A L       +  I  
Sbjct: 349 PDSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIPG 408

Query: 418 QKLRYYYSQAIRDRLQQLFQKYIT------------------------------------ 441
             LR    Q + +      +                                        
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDHGASGVLDGDDYFAASAYYENEPS 468

Query: 442 -----EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--------GKLSKKPSLREAA-- 486
                   GYG    + + ++D+K    +                    + P   E+   
Sbjct: 469 HAPFDAAPGYGEAQPRKSWNKDKKPWDGKKWDGKKKWDKGGRGDFKAPQRTPVSVESTTL 528

Query: 487 -LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L TL++HP +  +       +  + +   +L   L     +       ++  R     
Sbjct: 529 NALRTLLHHPQLALKVDDA-GTLAREQDTYAQLLVSLLEALQKNPRQSSMQLIARWHGTP 587

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
            G LL+ L  +                ++ + +   +         S++  E E+++  V
Sbjct: 588 QGRLLQALGEKEWLIVQ---------ENLEKQFFDTITKLSE----SQRFGEREERLRSV 634

Query: 606 TAKGEAEKTAILISILHE 623
             K  +E T    ++L E
Sbjct: 635 MQKSYSELTDEEKALLRE 652


>gi|254243671|ref|ZP_04936993.1| DNA primase [Pseudomonas aeruginosa 2192]
 gi|126197049|gb|EAZ61112.1| DNA primase [Pseudomonas aeruginosa 2192]
          Length = 664

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 182/678 (26%), Positives = 296/678 (43%), Gaps = 87/678 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I  ++   +   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVEVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLIR 119
           YCF C   G+ L F+       F ++V+ LA  AG+ +P  +        ++   + L  
Sbjct: 60  YCFGCGAGGNALGFVMDHDQLEFPQAVEELAKRAGMDVPREERGGRGHTPRQPTDSPLYP 119

Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL     
Sbjct: 120 LLSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNL 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             + +++AGLL++  ++   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPE
Sbjct: 180 QLKAMLDAGLLVENSDTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG+ LY  + A    +              I++VEGYMDV++L Q G++N V++L
Sbjct: 239 TPVFHKGQELYGLYEARQKNRDL----------DEIMVVEGYMDVIALAQQGIRNAVATL 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +E  ++ L++L P I+ CFDGD  G +AA++A++ VL +L  G RV F+ L  GED
Sbjct: 289 GTATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGED 348

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PDS +R  G+ AF   +  ++ PL +  +++        T + +A L       +  I  
Sbjct: 349 PDSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIPG 408

Query: 418 QKLRYYYSQAIRDRLQQLFQKYIT------------------------------------ 441
             LR    Q + +      +                                        
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDHGASGALDGDDYFAASAYYENEPS 468

Query: 442 -----EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--------GKLSKKPSLREAA-- 486
                   GYG    + + ++D+K    +                    + P   E+   
Sbjct: 469 HAPFDAAPGYGEAQPRKSWNKDKKPWDGKKWDGKKKWDKGGRGDFKTPQRTPVSVESTTL 528

Query: 487 -LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L TL++HP +  +       +  + +   +L   L     +       ++  R     
Sbjct: 529 NALRTLLHHPQLALKVDDA-GTLAREQDTYAQLLVSLLEALQKNPRQSSMQLIARWHGTP 587

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
            G LL+ L  +                ++ + +   +         S++  E E+++  V
Sbjct: 588 QGRLLQALGEKEWLIVQ---------ENLEKQFFDTITKLSE----SQRFGEREERLRSV 634

Query: 606 TAKGEAEKTAILISILHE 623
             K  +E T    ++L E
Sbjct: 635 MQKSYSELTDEEKALLRE 652


>gi|303238872|ref|ZP_07325403.1| DNA primase [Acetivibrio cellulolyticus CD2]
 gi|302593505|gb|EFL63222.1| DNA primase [Acetivibrio cellulolyticus CD2]
          Length = 595

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 168/631 (26%), Positives = 287/631 (45%), Gaps = 40/631 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            YP + I+++ ++  I +++G+YV  +++  N     Y+  CPFH EKTPSF  +++K  
Sbjct: 4   KYPEELIEEIRMNNDILDVVGEYVKLEKKGKN-----YFGLCPFHREKTPSFSVDNTKQM 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIRL 120
           Y+CF C   G  + F+       +IE+++ LA  A + LP  + + EKK  ++  ++I++
Sbjct: 59  YHCFGCGKGGSVIQFVMDAENLDYIEAIKLLAEKARITLPEGESEEEKKRALKTQEIIKI 118

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A  F++  L + ++     YL +R +    I+ F LGY+ +    L   L+ K +S+
Sbjct: 119 NTDAARFYYEQLNDKKNLDARDYLQKRKVSEGVIKKFGLGYSSNEWNLLYSFLKSKNYSD 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E +I +GL++   +    +DRFR R++FPI   RG VI FGGR L      KY+NSPET+
Sbjct: 179 EDLISSGLILAKKSGDGYFDRFRGRVMFPIFDLRGNVIGFGGRVL-DDSLPKYMNSPETL 237

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +++K +NLY    A N                 II+VEGYMDV+SL Q G+ N V+SLGT
Sbjct: 238 VYNKRRNLYALNFAKNS------------GEKRIIVVEGYMDVISLYQFGIINTVASLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q R+L K +  I++ +D D  G  A  + ++L       G  V  +L+ +G+DPD
Sbjct: 286 ALTESQGRILKKYAEEIIISYDADTAGQAATMRGLNL---LDDIGCNVKVLLIPKGKDPD 342

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FI+  G  AF+KL+  +L LV+   K           D +        + ++ I +   
Sbjct: 343 EFIKANGADAFKKLVDNALSLVEYKIKVLKSQIDTTAIDGKISFLNKAADILSKIDNSVE 402

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + I        +    E     R   K       K  S ++              
Sbjct: 403 QEMYIKKISQEYDISQESMFAEV--IKRVKPKGNYKPAIKIDSTKIKPVGNKTKSDENNL 460

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  +L  L    ++ ++    +    +   E +K    +F+   ++K  +P E+   
Sbjct: 461 VHYERIILSLLSIDNSLYRKIEDRINLEFFTLEENRKAAEIIFTKIKDKKGIVPAELLNL 520

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +           +              E N  D  +     +   +  + L ++++EI  
Sbjct: 521 VSNESANNFASMIQG------------ECNFEDNLRAILDIIKKIEVIK-LDKRQKEILN 567

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            I   ++ G  E    L   L  + IQ   +
Sbjct: 568 MI---SSSGNKEDVDRLKEELKSILIQKKSM 595


>gi|302560772|ref|ZP_07313114.1| DNA primase [Streptomyces griseoflavus Tu4000]
 gi|302478390|gb|EFL41483.1| DNA primase [Streptomyces griseoflavus Tu4000]
          Length = 650

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 149/659 (22%), Positives = 268/659 (40%), Gaps = 46/659 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  + SKG 
Sbjct: 4   RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIR 119
           ++CF C   GD ++F+  +   SF E+V+RLA  AG+ L   +       +   +  L+ 
Sbjct: 60  FHCFGCQEGGDTITFVMKIDHLSFSEAVERLAGQAGITLRYEEGGYNPTHQRGERIRLVE 119

Query: 120 LIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             ++A +++   L      +    +L +RG D  A   F +GY+P     L   LR KGF
Sbjct: 120 AHKIAAEWYAEQLATGPEAETGRAFLADRGFDQAAAVHFGVGYSPQGWDHLTRFLRGKGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237
           S+++++ +GL    +      DRFR RL++PIR   G V+ FG R L +     KYLN+P
Sbjct: 180 SDKELVLSGL--SQEGRRGPIDRFRGRLMWPIRDIGGDVVGFGARKLYEADTGPKYLNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++ K + LY    A   + K+ R           ++VEGY DV++   AGV   +++
Sbjct: 238 ETAIYKKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIAT 287

Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            GTA     +++L +L       R++  FDGD  G +AA +A +               +
Sbjct: 288 CGTAFGGDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP       G  A   L+    PL +   ++       +TP  RA         +
Sbjct: 345 APDGMDPCDLRLAKGDEAVSDLVQPRTPLYEFALRQIVRRYDLDTPAGRAAALDEAAPTV 404

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR------- 465
             IK+   ++  +  +   L  L  +++ +       W +    R      +R       
Sbjct: 405 ARIKNSGAQHEVAVQLAGMLGILDTQFVVKRVAQLARWARERGGRGPASDHRRQGGAPQQ 464

Query: 466 ----LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
                         L       E  LL   +  P ++   +       +       +   
Sbjct: 465 YAAAPAAPRGPALNLRNPVFATERELLKLALQRPELVSPAFDAYGVDEFTAPPYAAVRQA 524

Query: 522 LFSD-FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
           +      E     P+E   R+ E    + ++ +   V +  + +      +  V + Y  
Sbjct: 525 VLDAGGAEYGVQDPQEYLIRVREAAPDDAVRAM---VTELAVEAIMLHRGVKGVDEVYAG 581

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI---LHEVHIQIHQIESQEA 636
           A  +  R R + R+  +I  ++ ++ A G+  + + + +    L +    + +     A
Sbjct: 582 AQLVTVRRRAVERRIRDIAGRLTRLGAHGDPAELSSVQNELWVLQQYDQALREARRGRA 640


>gi|229825189|ref|ZP_04451258.1| hypothetical protein GCWU000182_00541 [Abiotrophia defectiva ATCC
           49176]
 gi|229790561|gb|EEP26675.1| hypothetical protein GCWU000182_00541 [Abiotrophia defectiva ATCC
           49176]
          Length = 589

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 160/634 (25%), Positives = 285/634 (44%), Gaps = 48/634 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I ++     I + I  YV   +R  N     Y   CPFH+EKTPSF  N  K 
Sbjct: 1   MFYSEEIIDEVREKNDIVDTISPYVRLTKRGAN-----YVGLCPFHNEKTPSFSVNTDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118
            ++CF C V G+ +SF+      +F E+++++A  AG+ LP    +P+  K+  ++T L 
Sbjct: 56  IFHCFGCGVGGNSISFVMKYENLTFTEAIKQMADKAGINLPEEYDNPESVKRADLRTRLF 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + + A  F++  L+         YL +RG+    I  F LGY+  S  +L  +L+ KG+
Sbjct: 116 EIYKEAAKFYYFQLRGDYGDYPMTYLKDRGLTDKTINDFGLGYSVKSSNALYNYLKSKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S+E +I+A L++        +D F NR+IFPI     +VIAFGGR + +GE  KYLNS E
Sbjct: 176 SDELMIKAELVVFK-EGKGVFDMFWNRVIFPIMDQNSKVIAFGGRVMGEGEP-KYLNSKE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F+K +NLY    A +              S F++L EGYMDV++L QAG  N V+SL
Sbjct: 234 TDIFNKRRNLYGLNFAKHS------------RSPFMLLCEGYMDVIALHQAGFTNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE Q RL+ +    +++ +D D  G++AA +A+ +       G R   + L+  +D
Sbjct: 282 GTALTEEQARLIARYVKEVIITYDSDGAGVKAALRALPI---LKSAGIRTKILKLAPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD  I+  G   FE+ I  +    +       +  + + P+ + E    +   +   +++
Sbjct: 339 PDELIKAAGHEEFEERIKNAENSFNFELSNIEKGFNLSEPEGKTEFLNKVAERLTDFEEE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y  A+ ++     +      +  G   +    +R+     ++  +++     L K
Sbjct: 399 LERENYIAAVAEKYFVSKETLTKLVNKIGGAKEIRETYREAGERIKKNDRTNTADEGLLK 458

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                   LL  + + P         ++   +     + +   +F    E +     EI 
Sbjct: 459 TN----RFLLSIIADKPEYYHRIKNIVSARDFATPLYKDVAGRIFGQIGEGRKPNVAEII 514

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R        L+  +  +  DA +            R+   + + +  R   L+ + +  
Sbjct: 515 SRYESGEDQALVAAVFEEKFDAEV--------DEKEREKAFKEIVIKVRRAGLAEEMK-- 564

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
                      +A     L + + +   ++++++
Sbjct: 565 ------AADSNDA----KLFTEITKKQRELNKLD 588


>gi|312883926|ref|ZP_07743643.1| DNA primase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368384|gb|EFP95919.1| DNA primase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 583

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 172/634 (27%), Positives = 298/634 (47%), Gaps = 65/634 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DL+  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLIARLDIVDIIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114
           +CF C V G+ + F+       F+E+++ LA   G+ +P            + +   + +
Sbjct: 60  HCFGCGVHGNAIDFMMEYERLDFVEAIEELANTLGLDVPREQRAGTSFPSKQPQANSEQK 119

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            +L  L+   + ++   LK  + K    YL ERG+    ++ F +GY  D   S+R++  
Sbjct: 120 RNLYDLMASISHYYRDQLK--QSKAAIDYLKERGLSGPIVQKFGIGYIADEWDSIRKNFG 177

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           Q    ++ ++  G+LI+ +     YDRFR R++FPIR  RG+VI FGGR L +G + KYL
Sbjct: 178 QTPQLQDMLVSGGMLIENEKGNR-YDRFRGRIMFPIRDRRGRVIGFGGRVLGEG-TPKYL 235

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKGK LY  +  +   +            S I++VEGYMDV++L Q G+   
Sbjct: 236 NSPETPIFHKGKELYGLYEVMQAHR----------EPSNILVVEGYMDVVALAQYGIDYS 285

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGT+ T   ++LL++ +  +V C+DGD  G  AA++A++  L  L  GN + F+ L 
Sbjct: 286 VASLGTSTTGDHIQLLFRQTNTVVCCYDGDRAGKDAAWRALENALQFLKTGNTLKFLFLP 345

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCI 412
            GEDPDSFIR +GK AFE+ I ES+PL   L+    +    N  + + ++ L  H    I
Sbjct: 346 DGEDPDSFIRQHGKEAFERKIAESIPLSRYLFDNLIDIHQLNLGSNEGKSALRAHASAMI 405

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             I D   +    + + +R                          + + P ++ +  +  
Sbjct: 406 EKIPDPFFQELLDKLLDER---------------------TGFDNNLRKPRKKSVDVATQ 444

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
                K+  +RE  ++  LI +P+  +      +        L  L+  +     ++   
Sbjct: 445 PHTALKRTPMRE--VIALLIQNPSYAEMVPNLSSVAGLPVPGL-SLFIEVLEYCHKRPNI 501

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              ++ +   +     LL +L              +  +  + +   Q +          
Sbjct: 502 SSGQLLECWRDTRHEALLSRLAGWSIPVED-DNEQDIFLDSLDKILAQCV---------E 551

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           +Q E+++ +  + +     E+   L++++ ++  
Sbjct: 552 KQIEDLQAK--ERSIGLSTEERRELLALMLDLKA 583


>gi|297571279|ref|YP_003697053.1| DNA primase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931626|gb|ADH92434.1| DNA primase [Arcanobacterium haemolyticum DSM 20595]
          Length = 650

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 151/671 (22%), Positives = 264/671 (39%), Gaps = 64/671 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  I D+     I +++G+YV           G     CPFHDEKTPSFH       +
Sbjct: 2   IKRSVIDDVREKTRIEDVVGEYVTLKTAG----VGSMKGLCPFHDEKTPSFHVRPHVNRW 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-----IQTDL 117
           +CF C   GD +SF+  +   +F+E+++ LA  AGV +   +   +++E       +T L
Sbjct: 58  HCFGCGEGGDAISFIERIEHVTFVEAIELLARKAGVVIEYEENGNKREESGPRDVTRTRL 117

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           I    VA +F+   L     +     L ERG     I  F++GY+PDS   L   LR++G
Sbjct: 118 IDAHRVAEEFYVQQLATDAGEPARKMLAERGFSPDVIAEFRVGYSPDSWDGLLTELRRRG 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNS 236
           FS+++I  +GL      +   YDRFR R+++PIRS  G  I FG R L +  +  KYLN+
Sbjct: 178 FSDKEISASGLASQ--KTRGLYDRFRGRVMWPIRSITGDPIGFGARKLFESDQGPKYLNT 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET+++ K   LY    A   +          +S   I++VEGY DV++   AGV+N V+
Sbjct: 236 PETMIYKKSGVLYGLDLAKKAI----------SSERAIVVVEGYTDVMAAHIAGVKNAVA 285

Query: 297 SLGTALTEYQLRLLWKLS-------------------PRIVLCFDGDDPGLRAAYKAIDL 337
           + GTA     ++++ +L                      ++  FDGD  G +AA +A   
Sbjct: 286 TCGTAFGSEHVKIVRRLMGDSANPAAGVMMSNGRAFGGEVIFTFDGDAAGQKAALRAFQE 345

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397
                    +    +   G DP       G  A   LI    PL +   +   +     T
Sbjct: 346 DQSFAA---QTFVAVSEGGMDPCELRMAGGDAAVRDLIARRRPLFEFAIRSLLDQLPLRT 402

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            + RA         +  I+D+ L+  YS+ +   L              GR  +      
Sbjct: 403 VEGRAAGLRAAAPIVAQIRDRVLQSEYSRQLAGWLGMDEALVRDSVRQAGRSARYAGPVE 462

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY-QELADIRYDNNELQ 516
             + P  + +     +  +    +  E   L  ++  P +       ++    +     Q
Sbjct: 463 PDEVPRPQPV--LEPRNLVRDPVARVERQALEVMLQLPGMAAAALADQIPSRTFRTPIHQ 520

Query: 517 KLWSFL------------FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
            ++  +            F           +    R       ++  Q D  V++A    
Sbjct: 521 SVFDAISAAGGVSAYVVKFDQLSAAGMPQTDA-SNRASTWFVEQVENQADDLVKNAVRQF 579

Query: 565 ATTEANIVDVRQGY--QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
           A       D ++ +   + + L    + +  Q  ++ +++       ++ +   L  +L 
Sbjct: 580 AVEPLPENDEKEPWPYVRGIILSLIRQGIVHQIADLRREMR--MIDADSPRQNELFEMLM 637

Query: 623 EVHIQIHQIES 633
           ++       + 
Sbjct: 638 KLEATRRAYDE 648


>gi|152976725|ref|YP_001376242.1| DNA primase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025477|gb|ABS23247.1| DNA primase [Bacillus cytotoxicus NVH 391-98]
          Length = 598

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 155/631 (24%), Positives = 273/631 (43%), Gaps = 40/631 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118
           ++CF C   G+  SFL  + G SF E+VQ+L     + +       E+++        ++
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLSFTEAVQKLGERNHIAVADYTSGKEQQDNISDDNVIML 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL  RGI    IE F++GYA     +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASPDWDAAAKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           FS   + +AGLL+  +   + YDRFR R++FPI + +G+V AF GR L   ++ KYLNSP
Sbjct: 179 FSLMTMEQAGLLVRSEKDGSHYDRFRGRVMFPIHTLQGKVAAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L       G +V   +L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGQEATMKAGQL---LTQVGCQVKVTVLPEKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG  AFE L+  S+  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTKAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  +++   Y +  K   +   Q     +++Q+   +    
Sbjct: 405 AMQAESYLKSLSQEFAYSMETLLSQLHQYRKEQKIQQKQAKQISKPSQIVQTKPKRSGF- 463

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  L+  ++    +       +    +   E + +   L++ + +         
Sbjct: 464 ---ERAERELIYHMLQSAEVAVRIEPHIE--DFHTEEHKGILYELYAYYEKGNEPSVGNF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +          S     N     +  +  L   KR +   ++ E 
Sbjct: 519 LNWLSDEKLKNIVTNI----------STDEFINPEYTDEILEGHLEALKRHKEKLKKMET 568

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           I   + Q+      E      + L     + 
Sbjct: 569 I-FTVKQMEKADPLEAAKFYAAYLQNQKARR 598


>gi|88704607|ref|ZP_01102320.1| DNA primase [Congregibacter litoralis KT71]
 gi|88700928|gb|EAQ98034.1| DNA primase [Congregibacter litoralis KT71]
          Length = 669

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 173/689 (25%), Positives = 279/689 (40%), Gaps = 92/689 (13%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI DLL  + I ++I + V   +   N     + A CPFHDEK+PSF  N  K F
Sbjct: 4   RIPQSFIDDLLDRVDIVDVIDRRVKLKKTGKN-----FSARCPFHDEKSPSFSVNPEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117
           YYCF C   G+ L F+       F ++V+ LA   G+ +   + + +    + E     L
Sbjct: 59  YYCFGCGAGGNALGFIMDYENIDFPQAVENLATGVGLEVVREESRGQGASPQGESPNKPL 118

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             L+E +  F+  +L+   +++      + RG+       F LG AP    +L +HL   
Sbjct: 119 YELMERSAAFYKDALRTHENRQPAVEYLKNRGLTGVVARDFGLGLAPAGWDNLLKHLGDD 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
             +  + I AG+L+  D     YDRFR+R++FPIR  RG+VIAFGGR L   +  KYLNS
Sbjct: 179 EQTLSRAITAGMLVKNDKG-RVYDRFRDRIVFPIRDRRGRVIAFGGRVL-GDDKPKYLNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ +FHKG+ LY  + A    +K  R          II+VEGYMDV++L QAG+   V+
Sbjct: 237 PESPIFHKGRELYGLYEARRANRKLDR----------IIVVEGYMDVIALAQAGISYAVA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA +   L  ++++ P +V CFDGD+ G +AA +A+   L  +  G +  F+ L  G
Sbjct: 287 TLGTATSTEHLERIFRVVPEVVFCFDGDEAGRKAAERALHNTLPTMADGRQARFLFLREG 346

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDS +R  G  AF  L+  ++PL + L++ +       T + RA L       I  + 
Sbjct: 347 EDPDSLVRKDGTQAFLDLVHAAVPLEEFLFQSQANGLDIGTMEGRASLSKRALPLIRILP 406

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEH--------------------------------- 443
           +   R    Q++ +R        +                                    
Sbjct: 407 EGVYRELMFQSLAERTGLELASLMKLELPPPEPPPAPEKARHGGASDSGFGSSANSYPDH 466

Query: 444 -----------------SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
                            SG            D    +    + +  +     +     A 
Sbjct: 467 HLPQYSDEFADNYPDIDSGDYYASMDGGPPPDAGAWAPSDDEPTPRQRAPLGQAPRAHAT 526

Query: 487 L----LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           L    +  L++ PA+                   +L   +     ++       +     
Sbjct: 527 LTQAAIALLLHKPAVAALADAHALSALEGRE--GELLKAIIELLQKRPESSTGMLLGHWH 584

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE----I 598
               GELL +L  Q R              D  +   Q +        L ++  E    +
Sbjct: 585 GSSEGELLAELAGQERLI----------PTDGIEAQFQDIIRRLTLLPLRQRIMEEISGL 634

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           + +        +  +   LI  L ++  +
Sbjct: 635 KSRPYAQLTADDKARLPELIRALRDLDTR 663


>gi|257068853|ref|YP_003155108.1| DNA primase [Brachybacterium faecium DSM 4810]
 gi|256559671|gb|ACU85518.1| DNA primase [Brachybacterium faecium DSM 4810]
          Length = 658

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 144/676 (21%), Positives = 259/676 (38%), Gaps = 69/676 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  +  +     +  ++ ++V           G     CPFHDEKTPSF+     G +
Sbjct: 6   IRRSDVDLVRERARLDEVVSEHVTLRTAG----IGSMKGLCPFHDEKTPSFNIRPQLGHW 61

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDLI 118
           +CF C   GD +SF+  +   SF+E+V+ LA   GV L   D    +  +     +  L+
Sbjct: 62  HCFGCGEGGDVISFVQKINHLSFVEAVEMLAGRYGVQLQYEDAGQGRGNRPDFGTRRRLL 121

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
               +A +++   L     +    +L ERG D  A   F +G+AP+   SL   LR +GF
Sbjct: 122 DAHAIAEEYYREQLGTPAAEVGRRFLTERGFDQDAAAHFGVGFAPEGWDSLTGVLRSRGF 181

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG-RTLSKGESVKYLNSP 237
           +E ++  +GL+  G      YDRFR RL++PIR   G  I FG  R L   +  KYLN+P
Sbjct: 182 TEAELTASGLVSQGQR--GVYDRFRGRLVWPIRDITGNTIGFGARRLLDSDQGPKYLNTP 239

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++HK   LY    A   +    R          +++VEGY DV++   AGV   V+S
Sbjct: 240 ETAIYHKSSVLYGLDIARKAISSQHR----------VVVVEGYTDVMAAHLAGVTTAVAS 289

Query: 298 LGTALTEYQLRLLWKLS-------------------PRIVLCFDGDDPGLRAAYKAIDLV 338
            GTA     ++++ ++                      +V  FDGD  G +AA +A +  
Sbjct: 290 CGTAFGAEHVKIVRRVMGDSNPSAGLRLNTDGRGLAGEVVFTFDGDAAGQKAALRAFEED 349

Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398
              +    +    + + G DP       G  A   LI    PL +   +        +T 
Sbjct: 350 QRFVA---QTYVAVEASGMDPCELRIAQGDQAVRDLIETRRPLFEFAIRTAISQVDLDTV 406

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           + +          +  I+D+ +R  Y++ +   L       +       R   +  +   
Sbjct: 407 EGQVTALRMAAPVVARIRDRAMRPEYARRLSGWLGMDEATVLRAVHDAARSQGRAPQPAT 466

Query: 459 QKG----------------PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL-QEQ 501
                               +                    E   L  ++  P +L  E+
Sbjct: 467 PARTVAEGQGGAGQGSSAEDAPIPSARLADVVSPRDPVGQVETQSLAVMLQSPQLLEDEK 526

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
              L D  +    LQ +W  + +        L + +  RL    + E + ++  +     
Sbjct: 527 VASLPDDAFHVPALQGVWDVMLAAGT-----LLDAVQGRLHAARYLEQVLEIAGETVRPL 581

Query: 562 LWSATT---EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
           +         A   +  +    +L        ++R+   +++++ +     +AE+   ++
Sbjct: 582 IVEIANLDLPARDEEGLRRLAHSLLDRLTELSITREYSVLKQRLQRTDPS-DAERYQDIM 640

Query: 619 SILHEVHIQIHQIESQ 634
           + L +V  +   + + 
Sbjct: 641 ARLAQVQGRRRALRAS 656


>gi|303230700|ref|ZP_07317447.1| DNA primase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514460|gb|EFL56455.1| DNA primase [Veillonella atypica ACS-049-V-Sch6]
          Length = 585

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 176/631 (27%), Positives = 297/631 (47%), Gaps = 56/631 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           +  + I+ +     I +++ ++V   ++  N     YW CCPFH+EKTPSF     KGFY
Sbjct: 5   FENELIEQIKDANDIVSVVSEHVTLKKKGKN-----YWGCCPFHNEKTPSFSVAPDKGFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           YCF CH  G+ + FL  L G +F+E+++RLA  A +PLP     P++  +E+ +  L   
Sbjct: 60  YCFGCHASGNAIKFLMELEGITFVEALERLANRANIPLPEAKLSPQVRAREERRKKLYEA 119

Query: 121 IEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            ++A +FFH+  LK +  K    YL +RG+    IE F+LG+APD    L +  R++G  
Sbjct: 120 CDLAANFFHNCLLKTSYGKAGLEYLKKRGLTDETIEKFRLGFAPDGWDRLYKAFRERGIE 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           E  ++E  L I  ++   +YD FRNR++FPI   +G+V+ FGGR +    + KYLNSPE 
Sbjct: 180 ESILLELNL-IRKNDKGQAYDFFRNRVMFPIMDGKGRVVGFGGRVM-DDSTPKYLNSPEC 237

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGK L+ F  A   ++               ILVEGYMDV+S    GV NVV+SLG
Sbjct: 238 QIFEKGKILFAFDKAYKSIR----------EEKQAILVEGYMDVISAHNKGVTNVVASLG 287

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T+    +L + +  I+L +D D  G +A  +AI+L         +V  + +   +DP
Sbjct: 288 TAYTKDHGHILMRQADEIILAYDMDGAGRQAVTRAIEL---LQNTDFKVRVLAMPDDKDP 344

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D ++R +G  AF++L+ +++  +D L          N  + +  +   +   I +I  Q 
Sbjct: 345 DDYVRNHGGKAFKELVEKAVKPLDYLLSESLIKHDTNDAEGKQAVMQDIFPYIANIHSQT 404

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           +R        D L+ L      ++S   RY++   +  + +   +++ Q   +       
Sbjct: 405 IRD-------DALKALALPLWLDNSTIFRYFRNYTQKGNIELVDEKITQPKKIVSGD--- 454

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  L+  +I     LQE  Q L    + N + + +   +++ F +   + PE +  
Sbjct: 455 ----EELLMAHVITDSRALQEVVQYLPLEDFQNIQYRGIIEKIYTLFTQTGQYQPESVED 510

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L  + + E+  +L     +  +                   L    R   L  Q +   
Sbjct: 511 VLTPQEY-EIFSRLMIIEANEAVP-----------------VLIRKIRLHSLREQYKMHS 552

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               Q+   G++   + L     E+   I +
Sbjct: 553 ILADQLKRAGDSTFISEL-HKCQEIQNLIRE 582


>gi|319400898|gb|EFV89117.1| DNA primase [Staphylococcus epidermidis FRI909]
          Length = 598

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 157/635 (24%), Positives = 283/635 (44%), Gaps = 41/635 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSVIDEIKNKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV---VDPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     + + +         K    +  +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDVSFVEAVKDLGERVNIQVDIGQNQTNSSTKIASDELKM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  D++H++L K    +    YL ERG     I+  ++GYAPD+ +   + L +K
Sbjct: 116 IEMHELIKDYYHYALMKTVEGEEALNYLHERGFTDDLIKEREIGYAPDNSHFCHDFLEKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + T +DRFRNR++FP+++ +G+++ + GRT    +  KYLNS
Sbjct: 176 GYDIELAFEAGLLSRNEENFTYFDRFRNRIMFPLKNGQGRIVGYSGRT-YTNQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K + LYN   A  +++K             IIL+EG+MDV+    AG++ VV+
Sbjct: 235 PETPIFQKRRILYNLNKARKFIRKQ----------DEIILLEGFMDVIKSDYAGLKQVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S+GT L++  +  L KL+  + L FDGD  G  A    I      L  G  V  V L  G
Sbjct: 285 SMGTQLSQEHITFLQKLTQNVTLMFDGDYAGKEAT---IKTGQALLNQGLNVFVVQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +IR Y    F K + +      +   +  +N   +      +        ++ + 
Sbjct: 342 MDPDDYIRKYDNEQFIKFVQQDKQSFVLFKVKMYQNEINHNDLAYEKHFKETVRDLSLVN 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              +R    Q I D  +   +    E     ++   +    +     Q       +    
Sbjct: 402 SGIIRNKLIQNIADIFKVSPETIQYELDATYQHQMPS----NTYPTFQDEPSKQQLILGR 457

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             K    E AL+  L+         YQ++    + N+ L++++S+L+  + +  Y+   +
Sbjct: 458 LTKNEKAERALIKHLMKDKDTFLNYYQKVVPEDFTNSYLKRIFSYLYDYYSKNDYYTISD 517

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + Q +      E+L +LD+   +        +    +  + Y Q +        L     
Sbjct: 518 MMQYIESNELREVLIELDQYHLN--------DEPYENEIEDYIQIIKNNNNEDSLE---- 565

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            +  ++ + +  G++E     + ++  V+   +++
Sbjct: 566 SLNYKLREASRIGDSELQKYYLQLI--VNKNKNRM 598


>gi|320010941|gb|ADW05791.1| DNA primase [Streptomyces flavogriseus ATCC 33331]
          Length = 635

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 145/655 (22%), Positives = 259/655 (39%), Gaps = 44/655 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  +  KG 
Sbjct: 4   RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPGKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD ++F+  +   +F E+V+RLAA AG+ L   +       +   +  L+ 
Sbjct: 60  FHCFGCQEGGDTIAFVMKIDHLTFSETVERLAAKAGITLRYEEGGYNPSHQRGERIRLVE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             ++A DF+   L     +    +L ERG D  A   F +GY+P     L  +LR KGFS
Sbjct: 120 AHKIAADFYREQLNGPEAEIGRRFLAERGFDQDAAAHFGVGYSPAGWDHLTRYLRGKGFS 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           ++++I +G  I  D      DRFR RL++PI  + G ++ FG R L   ++  KYLN+PE
Sbjct: 180 DKELISSG--ISQDGRRGPIDRFRGRLMWPISDTSGDIVGFGARRLRDDDNGPKYLNTPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K + LY    A   + K+ R           ++VEGY DV++   AGV   +++ 
Sbjct: 238 TSIYKKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIATC 287

Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           GTA     +++L +L       R++  FDGD  G +AA +A +               + 
Sbjct: 288 GTAFGNDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIA 344

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DP       G  A   L+    PL +   ++        TP  RA         + 
Sbjct: 345 PDNMDPCDLRLAKGDDAVRDLVEPRTPLFEFALRQIVGRYDLETPAGRAAALDEAAAVVA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR-------- 465
            IK   ++   +  +   +  L Q+++         W +    R                
Sbjct: 405 KIKTSSVQREVAVQLAGFVGILDQEFVVHRVNQLAQWARGRGERGPAPGKPSRGGAPQHQ 464

Query: 466 ---LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
                        L       E  LL   +  PA++   +       +       +   +
Sbjct: 465 IQAPTAPPGPALNLRSPAHRTERELLKLALQKPALVSPAFDAYGIDEFTAPPYAAVRQCI 524

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                 +      E    L +         + + V +  +     ++    + + Y    
Sbjct: 525 AEAGGAEMGV--AETRDYLVQVLDATPDDTVRKLVTELAVEVFHGKS----IDETYAGEH 578

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            +  R R + R+ ++++  +A++ +    +  A   + +  +      + S  A 
Sbjct: 579 LVKVRLRAVDRRIDDVQSSLARLGSNVAPDHLAAAQNEVWVLQQYAQSLRSHGAA 633


>gi|251810979|ref|ZP_04825452.1| DNA primase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805489|gb|EES58146.1| DNA primase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 598

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 157/635 (24%), Positives = 282/635 (44%), Gaps = 41/635 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSVIDEIKNKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV---VDPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     + + +         K    +  +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDVSFVEAVKDLGERVNIQVDIGQNQTNSSTKIASDELKM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  D++H++L K    +    YL ERG     I+  ++GYAPD+ +   + L++K
Sbjct: 116 IEMHELIKDYYHYALMKTVEGEEALNYLHERGFTDDLIKEREIGYAPDNSHFCHDFLKKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + T +DRFRNR++FP+++ +G+++ + GRT    +  KYLNS
Sbjct: 176 GYDIELAFEAGLLSRNEENFTYFDRFRNRIMFPLKNGQGRIVGYSGRT-YTDQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K + LYN   A  +++K             IIL+EG+MDV+    AG++ VV+
Sbjct: 235 PETPIFQKRRILYNLNKARKFIRKQ----------DEIILLEGFMDVIKSDYAGLKQVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S+GT L++  +  L KL+  + L FDGD  G  A  K        L  G  V  V L  G
Sbjct: 285 SMGTQLSQEHITFLQKLTQNVTLMFDGDYAGKEATLKTGQ---ALLNQGLNVYVVQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +IR Y    F K + +      +   +  +N   +      +        ++ + 
Sbjct: 342 MDPDDYIRKYDNEQFLKFVQQDKQSFVLFKVKMYQNEINHNDLAYEKHFKETVRDLSLVN 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              +R    Q I D  +   +    E     ++        +     Q       +    
Sbjct: 402 SGIIRNKLIQNIADIFKVNPETIQYELDATYQHQM----SSNTYPTFQDEPSKQQLILGR 457

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             K    E AL+  L          YQ++    + N+ L++++S+L+  + +  Y+   +
Sbjct: 458 LTKNEKAERALIKHLTKDKDTFLNYYQKIVPEDFTNSYLKRIFSYLYDYYSKNDYYTISD 517

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + Q +      E+L +LD+   +        +    +  + Y Q +        L     
Sbjct: 518 MMQYIESNELREVLIELDQYHLN--------DEPYENEIEDYIQIIKNNNNEDSLE---- 565

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            +  ++ + +  G++E     + ++  V+   +++
Sbjct: 566 SLNYKLREASRIGDSELQKYYLQLI--VNKNKNRM 598


>gi|242242834|ref|ZP_04797279.1| DNA primase [Staphylococcus epidermidis W23144]
 gi|242233735|gb|EES36047.1| DNA primase [Staphylococcus epidermidis W23144]
          Length = 598

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 157/635 (24%), Positives = 283/635 (44%), Gaps = 41/635 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSVIDEIKNKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV---VDPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     + + +         K    +  +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDVSFVEAVKDLGERVNIQVDIGQNQTNSSTKIASDELKM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  D++H++L K    +    YL ERG     I+  ++GYAPD+ +   + L +K
Sbjct: 116 IEMHELIKDYYHYALMKTVEGEEALNYLHERGFTDDLIKEREIGYAPDNSHFCHDFLEKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + T +DRFRNR++FP+++ +G+++ + GRT    +  KYLNS
Sbjct: 176 GYDIELAFEAGLLSRNEENFTYFDRFRNRIMFPLKNGQGRIVGYSGRT-YTNQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K + LYN   A  +++K             IIL+EG+MDV+    AG++ VV+
Sbjct: 235 PETPIFQKRRILYNLNKARKFIRKQ----------DEIILLEGFMDVIKSDYAGLKQVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S+GT L++  +  L KL+  + L FDGD  G  A    I      L  G  V  V L  G
Sbjct: 285 SMGTQLSQEHITFLQKLTQNVTLMFDGDYAGKEAT---IKTGQALLNQGLNVFVVQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +IR Y    F K + +      +   +  +N   +      +        ++ + 
Sbjct: 342 MDPDDYIRKYDNEQFIKFVQQDKQSFVLFKVKMYQNEINHNDLAYEKHFKETVRDLSLVN 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              +R    Q I D  +   +    E     ++   +    +     Q       +    
Sbjct: 402 SSIIRNKLIQNIADIFKVSPETIQYELDATYQHQMPS----NTYPTFQDEPSKQQLILGR 457

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             K    E AL+  L+         YQ++    + N+ L++++S+L+  + +  Y+   +
Sbjct: 458 LTKNEKAERALIKHLMKDKDTFLNYYQKVVPEDFTNSYLKRIFSYLYDYYSKNDYYTISD 517

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + Q +      E+L +LD+   +        +    +  + Y Q +        L     
Sbjct: 518 MMQYIESNELREVLIELDQYHLN--------DEPYENEIEDYIQIIKNNNNEDSLE---- 565

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            +  ++ + +  G++E     + ++  V+   +++
Sbjct: 566 SLNYKLREASRIGDSELQKYYLQLI--VNKNKNRM 598


>gi|292490205|ref|YP_003525644.1| DNA primase [Nitrosococcus halophilus Nc4]
 gi|291578800|gb|ADE13257.1| DNA primase [Nitrosococcus halophilus Nc4]
          Length = 571

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 172/621 (27%), Positives = 269/621 (43%), Gaps = 57/621 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            +P++FI +L+    I  LI   +   +        +Y ACCPFH+EKTPSF  +  K F
Sbjct: 4   RFPQEFIDELVARTDIVELIDSRIPLRKAGR-----EYVACCPFHNEKTPSFTVSPQKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C V G  + FL A    SFIE+V+ LA   G+ +P       +       L  ++
Sbjct: 59  YHCFGCGVHGTVIGFLIAFDRLSFIEAVEELAQRVGMTIPQGSDSAHR--NHHQGLYEVL 116

Query: 122 EVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
               +F+   LK      R+  YL  RG+    I  F LG+AP    +L  H      S 
Sbjct: 117 SYTAEFYQQQLKTGTHQGRVKAYLQGRGLSHPIITEFGLGFAPSRWDALLRHTPLPLRSR 176

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            +     +          YDRFR+R++FPI   RG+V+ FGGR L +G   KYLNSPET 
Sbjct: 177 LQTAGLVVDK---GDGRCYDRFRDRVMFPIHDYRGRVVGFGGRLLGEGSP-KYLNSPETP 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LY  +     ++   R          +++VEGYMDVL+L +  ++  V++LGT
Sbjct: 233 LFHKGRELYGLYQVRQSVRHCDR----------LLVVEGYMDVLALAEHNIRYAVATLGT 282

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T   L  L++++P +V CFDGD  G RAA++A++  L  L  G +V F+ L +GEDPD
Sbjct: 283 ATTPDHLTRLFRMTPVVVFCFDGDRAGYRAAWRALETALPLLSQGRQVQFMFLPQGEDPD 342

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           + +R  G+ AFE  + ++ PL D L        +  + D RA L    +  ++ I     
Sbjct: 343 TVVRAEGQAAFEARLEKATPLSDFLLSSLQRKVNLGSMDGRARLVELARPLVSKIPPGVY 402

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R      + + + Q+ Q  +T H   G+                      + + +L +  
Sbjct: 403 RDMLLARLAE-VAQVEQAALTRHLDQGKS------------------PPVVPRQRLERGM 443

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +      +  L+  P ++Q   +  +    D    +     L        +     + +R
Sbjct: 444 APLARKAVAILLQRPNLIQSVDESFSLRGLDGRGAKL-LQELIELLQSSPHLSTAALLER 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             +   G  L+QL                            L L    R L  Q  E   
Sbjct: 503 WRDSEMGRYLEQLASWELFLTDEDMG---------------LELQAALRRLQAQAAEQRM 547

Query: 601 QIAQVTAKGEAEKTAILISIL 621
            +        A +   L+++L
Sbjct: 548 TMLSNQPSLTAAERQELLALL 568


>gi|126436031|ref|YP_001071722.1| DNA primase [Mycobacterium sp. JLS]
 gi|126235831|gb|ABN99231.1| DNA primase [Mycobacterium sp. JLS]
          Length = 640

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 141/651 (21%), Positives = 254/651 (39%), Gaps = 40/651 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +   + I +++G YV   R             CPFHDEK+PSFH   + G 
Sbjct: 4   RIPDRDIAAIRERVRIEDVVGDYVQLRRAGA----DSLKGLCPFHDEKSPSFHVRPNHGH 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118
           ++CF C   GD  +F+  +   SF+ESV+ LA   G  +      +  +++    ++ L+
Sbjct: 60  FHCFGCGEGGDVYAFVQKIEHVSFVESVELLADRIGYTVTYTGASNTNVQRDRGSRSRLL 119

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
                A +F+  +L +        YL ER  D+ A   F  G+AP     L +HL +KGF
Sbjct: 120 AANAAAQEFYAEALTSDEAAPARQYLIERNFDAQAAARFGCGFAPSGWDKLTKHLLRKGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
             +++  AGL  +        DRF  RL++PIR++ G+VI FG R +   + +  KY+N+
Sbjct: 180 EFKELEAAGLSRE--GKRGPMDRFHRRLLWPIRAAGGEVIGFGARRIFDDDQMEAKYVNT 237

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET+L+ K   L+    A   + KS R           ++VEGY DV+++  A     V+
Sbjct: 238 PETVLYKKSAVLFGLDLAKRDIAKSHRA----------VVVEGYTDVMAMHLANETTAVA 287

Query: 297 SLGTALTEYQLRLLWK-----LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           S GTA  E  L LL +        R  L F  D      A           + G     V
Sbjct: 288 SCGTAFGEGHLALLRRLMMDDNWYRGELIFVFDGDAAGQAAALKAFDGDQQVAGKSFVAV 347

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE--RAELEIHLK 409
             + G DP       G  A   L+   +P+ +   +           D   + E      
Sbjct: 348 -AADGMDPCDLRLKSGDNALRDLVARRIPMFEFAIRSLIPAGDVLDNDPAAQVEALRRCV 406

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
             ++ I+D  LR  Y++ +          Q+  +   E +  G   +   R+     P+Q
Sbjct: 407 PLVSRIRDYALRDEYARRLAGWTGWADEAQVLNRVREEAAKRGMPDRGRRRNGADAAPAQ 466

Query: 465 RLMQSSLVKGKLSKKPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                 +        P+L  +   L + + +PA+    +  L    + +   + + + + 
Sbjct: 467 PRRAPDVAARPDPADPTLWPQREALKSALQYPALAGPVFDALTVDSFTHPGYRAVRTAIE 526

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           +           +  + + E+        L  ++    +     +         Y   + 
Sbjct: 527 AAGGAAAGLSGAQWIEVVREQTASPQAANLVNELSVEAIRVEDDDKLP-----RYIGGVL 581

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              +   + RQ  E++ ++ +++   + ++   L   L  +      +  Q
Sbjct: 582 ARLQEVWVGRQIAEVKSKLQRMSPVEQGDEYHALFGDLVAMEAYRRSLLEQ 632


>gi|163942051|ref|YP_001646935.1| DNA primase [Bacillus weihenstephanensis KBAB4]
 gi|229135119|ref|ZP_04263921.1| DNA primase [Bacillus cereus BDRD-ST196]
 gi|229169043|ref|ZP_04296759.1| DNA primase [Bacillus cereus AH621]
 gi|163864248|gb|ABY45307.1| DNA primase [Bacillus weihenstephanensis KBAB4]
 gi|228614452|gb|EEK71561.1| DNA primase [Bacillus cereus AH621]
 gi|228648348|gb|EEL04381.1| DNA primase [Bacillus cereus BDRD-ST196]
          Length = 600

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 153/632 (24%), Positives = 276/632 (43%), Gaps = 42/632 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD----- 116
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++++         
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQQQEDISDDTVI 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           + +  E+   ++HH L           YL +RGI    IE F++GYA  +  +  + L++
Sbjct: 119 MQQAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASQAWDAATKILQK 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G S   + +AGLL+  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLN
Sbjct: 179 RGLSLSSMEQAGLLVRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F+K K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V
Sbjct: 238 SPETPIFYKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAV 287

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +++GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L  
Sbjct: 288 ATMGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ +
Sbjct: 345 KLDPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLL 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +D      Y +++        +  + +   Y +  K   +   Q     +++Q+      
Sbjct: 405 QDAMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVSKPSQIVQT----KP 460

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E  ++  ++    +       +    +   E + +   L++ + +       
Sbjct: 461 KLTGFERAEREIIYHMLQSAEVTVRMEPHIE--DFYTEEHKGILYELYAYYEKGNEPSVG 518

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                L +     ++  +      +       E     ++   +   AL +    L +  
Sbjct: 519 TFLSWLSDEKLKNIITDI------STDEFINPEYTEEALQGHLE---ALRRHKEKLEKM- 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            EI  ++ Q+      E     ++ L     +
Sbjct: 569 -EIIFKVKQMEKTDPVEAAKYYVAYLQSQKAR 599


>gi|253991032|ref|YP_003042388.1| DNA primase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782482|emb|CAQ85646.1| DNA primase [Photorhabdus asymbiotica]
          Length = 581

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 166/635 (26%), Positives = 294/635 (46%), Gaps = 67/635 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I  LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRAFINDLLARTDIIELIDVRVPLKKQGKN-----YHACCPFHNEKTPSFTVNGDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LAA+ G+ +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVESIEELAAMHGLEVPYEAGSGSSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+ +SL  +  ++   YL +RG+    I  F +G+AP    +  +   +    
Sbjct: 119 LMDKLNSFYQNSLNTSAAQQARQYLAQRGLSEEVIHRFSIGFAPAGWDNTLKRFARNAEE 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            +++ +AG+L+  +++  +YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RQQLNDAGMLV-ANDNGRTYDRFRERVMFPIRDRRGRVIAFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  +      +            S +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEVQKSHK----------ELSQLLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTSEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS +R  G+ AFE+ + +S  L + L++        ++P+ + +L       IN I  + 
Sbjct: 347 DSLVRKEGRKAFEQRMEQSHTLSEFLFESLLPQVDLSSPEGKTKLSSLSVPLINQIPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + + +       +            N +    K  +                
Sbjct: 407 LRLYMRQELGNMIGIPDAVQLEHLLPQRLENGNNYQMPQLKPTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ-------YQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
                  L+  L+ +P +             ++A +         L+  L    + Q   
Sbjct: 452 -----RILIGLLVQNPHLAALVPPLQGIMQAKIAGLP--------LFMELVEVCLTQPGL 498

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              ++ ++  +  F + L++L              +  + ++ +   +    +     L 
Sbjct: 499 TTGQLLEQYRDTKFSKQLEKLATW----------NDIQVEEIAENTFRDALDHLVDSALE 548

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            + + +   IA+   +G  ++    + +++E   +
Sbjct: 549 ERLDIL---IARARTEGLTQEEREEVRLINESRAR 580


>gi|229061988|ref|ZP_04199314.1| DNA primase [Bacillus cereus AH603]
 gi|228717297|gb|EEL68970.1| DNA primase [Bacillus cereus AH603]
          Length = 600

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 153/632 (24%), Positives = 276/632 (43%), Gaps = 42/632 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD----- 116
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++++         
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQQQEDISDDTVI 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           + +  E+   ++HH L           YL +RGI    IE F++GYA  +  +  + L++
Sbjct: 119 MQQAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASQAWDAATKILQK 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G S   + +AGLL+  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLN
Sbjct: 179 RGLSLSSMEQAGLLVRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F+K K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V
Sbjct: 238 SPETPIFYKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAV 287

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +++GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L  
Sbjct: 288 ATMGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ +
Sbjct: 345 KLDPDEYVQQYGTTAFENLVKSSISFVGFKINHLRLGKNLQDESGKEEYVKSVLKELSLL 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +D      Y +++        +  + +   Y +  K   +   Q     +++Q+      
Sbjct: 405 QDAMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVSKPSQIVQT----KP 460

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E  ++  ++    +       +    +   E + +   L++ + +       
Sbjct: 461 KLTGFERAEREIIYHMLQSAEVTVRMEPHIE--DFYTEEHKGILYELYAYYEKGNEPSVG 518

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                L +     ++  +      +       E     ++   +   AL +    L +  
Sbjct: 519 TFLSWLSDEKLKNIITDI------STDEFINPEYTEEALQGHLE---ALRRHKEKLEKM- 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            EI  ++ Q+      E     ++ L     +
Sbjct: 569 -EIIFKVKQMEKTDPVEAAKYYVAYLQSQKAR 599


>gi|167855426|ref|ZP_02478191.1| DNA primase [Haemophilus parasuis 29755]
 gi|167853420|gb|EDS24669.1| DNA primase [Haemophilus parasuis 29755]
          Length = 582

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 178/625 (28%), Positives = 292/625 (46%), Gaps = 54/625 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DL+    I  LI   V   +        DY ACCPFH EK+PSF  + SK F
Sbjct: 4   SIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQSKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C V G+ +SFL       F E+++ LAA+ G+ +P       D K +   K + +
Sbjct: 59  YHCFGCGVHGNVISFLMEYDKLEFPEAIEELAALHGLEVPRENVINRDGKPQASYKTRRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L+++   F+   L      +   YL +RG+    I+ F++G++P++  ++       
Sbjct: 119 LYELLDLVAKFYQQQLTQDSASQA--YLQQRGLSQEIIDRFEIGFSPNAMDAVLRRFGNN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
               +K+++ G+L   D     YDRFRNR++FPIR  RG+VIAFGGR L   E  KYLNS
Sbjct: 177 PEEVQKLLDTGMLSKNDRG-NVYDRFRNRVMFPIRDKRGRVIAFGGRVL-GDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+  +HKG  LY  + AL +            +  F+ +VEGYMDV++L Q GV N V+
Sbjct: 235 PESATYHKGNELYGLYQALQH----------NENPDFLFVVEGYMDVVALAQFGVNNAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGTA T  Q++L+++ + +++ C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTATTGEQIQLMFRSTEQVICCYDGDRAGRDAAWRALENALSYLHDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD+FIR  GK  FE+ + ++L L + L+         +T + +++L       I  I 
Sbjct: 345 EDPDTFIRSQGKEGFERYLEQALTLSEFLFDSLLTQVDLSTKEGKSKLASLALPLIKRIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR Y    +  +L  L    +              RH         +          
Sbjct: 405 GEMLRLYLRNILGQKLGILDPTQLEVMLPQKSVETAPKRHNMPHIERTPM---------- 454

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     L+  L+ +P ++Q   +++  ++    +   L+  L +            
Sbjct: 455 --------RLLIALLLQNPHLVQNVPEDVTFLQSLQEKGFDLFLELVNICHANLGISMGG 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + + L E      L+ L                +  +V   +   L  + + +LL RQ E
Sbjct: 507 VLEHLRESPNYRHLELLANWDHLV---------SPENVENTFIDTLDFFYK-KLLDRQIE 556

Query: 597 EIEKQIAQVTAKGEAEKTAILISIL 621
            +  +    T     ++   L+ +L
Sbjct: 557 ILMAK--DRTTGLNQQEKQELMMLL 579


>gi|83589487|ref|YP_429496.1| DNA primase [Moorella thermoacetica ATCC 39073]
 gi|83572401|gb|ABC18953.1| DNA primase [Moorella thermoacetica ATCC 39073]
          Length = 605

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 175/634 (27%), Positives = 282/634 (44%), Gaps = 42/634 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            + +D I ++   I I  +IG YV   +R        Y   CPFH+EKTPSF  +  K  
Sbjct: 4   AFNQDVIHEVKDRIDIVEIIGGYVQLKKRGR-----SYVGLCPFHNEKTPSFTVSPDKQV 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIR 119
           +YCF C   GD L+FL    G SF E++  LAA AGV L      P   ++ +++  L R
Sbjct: 59  FYCFGCGAGGDVLTFLMKREGLSFPEALAALAARAGVELVGEEETPAARRQRELKERLYR 118

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L  +A  F++  L ++        YL  RGI       F+LG+APD+   L  +L+++GF
Sbjct: 119 LGAIAASFYYRILARHPAGAPARSYLQRRGIKGVTARQFELGFAPDAGAVLVNYLQRQGF 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           + E+I +AGL           DRFR RL+FPI+ SR +VI FGGR L +G+  KYLNSPE
Sbjct: 179 TPEEIEQAGL-SLSRPPRGLVDRFRGRLMFPIKDSRSRVIGFGGRVLGEGQP-KYLNSPE 236

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TILFHKG +L+    +L  ++K  R           ILVEGYMD+++  Q G+ NVV+SL
Sbjct: 237 TILFHKGHHLFGLHLSLPGIRKEGRA----------ILVEGYMDMIAAWQHGIDNVVASL 286

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT  Q R L K +  +++ +D D  G  A  + +D+       G +V  + L  G+D
Sbjct: 287 GTSLTPAQARELKKYAREVIIAYDADTAGQAATLRGLDI---LAAAGLQVRVLQLPEGKD 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD F+   G  AF +L+  S  L++    +        T   R  +   L   +  ++D 
Sbjct: 344 PDEFLAARGPEAFRELVAGSQGLMEFRIHKAVSEHDAGTAAGRKAIMTALLPYLRQVRDA 403

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +  Y++ +           + +         +  +    +            +   + 
Sbjct: 404 VEQETYARLLNRYTGISETAILNDIRRPEARLDRAVKTTYIRD----------GRAGGTA 453

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            P   E  LL   +  PA+      EL +    +   + L + +     E       ++ 
Sbjct: 454 APHQAELFLLRAYLASPALATRIDAELGENWCRDQAARDLVAAVRERRRENPELTGPDLA 513

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L   G     + L  ++  A       E  +    +          + + L RQ + +
Sbjct: 514 GILTP-GREPQQEALLARLTLAEDLGPVEERAVNKAIR--------LLKLQQLRRQSKSL 564

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
              +A+    G+ E+   L   +  +   I+ ++
Sbjct: 565 WLALARAEDTGDQEQVRELQGKIFHLQQTINSLK 598


>gi|254819371|ref|ZP_05224372.1| DNA primase [Mycobacterium intracellulare ATCC 13950]
          Length = 650

 Score =  363 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 142/648 (21%), Positives = 249/648 (38%), Gaps = 37/648 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +   + I  ++G YV   R             CPFHDEK+PSFH   + G 
Sbjct: 20  RIPDRDIAAIRERVRIDEVVGDYVQLRRAGA----DSLKGLCPFHDEKSPSFHVRPNHGH 75

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD  +F+  +   SF+E+V+ LA   G  +    P    +     ++ L+ 
Sbjct: 76  FHCFGCGEGGDVYAFIQKIEHVSFVEAVELLADRIGHTITYSGPATSVQRDRGSRSRLVA 135

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A +F+  +L++        YL ER  D+ A   F  G+AP    SL +HL +KGF 
Sbjct: 136 ANAAAAEFYAAALESDEAAPARQYLTERNFDAEAARHFGCGFAPSGWDSLTKHLVRKGFE 195

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            +++  AGL           DRF  RL++PIRSS G+VI FG R L   + +  KY+N+P
Sbjct: 196 FKELEAAGLSRQ--GRRGPMDRFHRRLLWPIRSSAGEVIGFGARRLFDDDPMEAKYINTP 253

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K   ++    A   + K              ++VEGY DV+++  AGV   V+S
Sbjct: 254 ETLLYKKSNVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVAS 303

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDG----DDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            GTA  +  L +L +L               D        A+           +    + 
Sbjct: 304 CGTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDAAGRAAALKAFGGEQNLAGQSFVAVA 363

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  A   L+    PL +   +        ++ + R          + 
Sbjct: 364 PDGMDPCDLRLKSGDGALRDLVARRTPLFEFAIRSALAEMDLDSAEGRVAALRRCVPMVG 423

Query: 414 HIKDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
            IKD  LR  Y++ +   +      + I    G  +  K  AR       S+R  Q +  
Sbjct: 424 QIKDPTLRDEYARQLAGWVGWDDVAQVIDRVRGQSKNAKTPARGGAGPKASRRAEQPAAA 483

Query: 473 KGKLSKKPSLR------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
               + +P  R      +   L + + +PA+    +  L    + +     + + + +  
Sbjct: 484 AHAAASRPDPRDPTLWPQREALKSALQYPALAGPVFDTLTVESFTHPGYAAIRAAIETAG 543

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                    +  + + +R    L   L  ++    +     +         Y   +    
Sbjct: 544 GTSSGVTGAQWLEVVRDRASSPLTAALISELGVEAIQVDEEKMP------RYIAGVLARL 597

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +   + RQ  E++ ++ +++   + ++   L   L  +      +  Q
Sbjct: 598 QEVWMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 645


>gi|290960624|ref|YP_003491806.1| DNA primase [Streptomyces scabiei 87.22]
 gi|260650150|emb|CBG73266.1| DNA primase [Streptomyces scabiei 87.22]
          Length = 633

 Score =  363 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 150/656 (22%), Positives = 275/656 (41%), Gaps = 46/656 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  + SKG 
Sbjct: 4   RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIR 119
           ++CF C   GD ++F+  +   SF E+V+RLA  AG+ L   +       +   +  L+ 
Sbjct: 60  FHCFGCQEGGDTITFVMKVDHLSFSEAVERLAGQAGITLRYEEGGYNPTHQRGERIRLVE 119

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             ++A +++   L  +        +L ERG D  A   F +GY+P     L   LR KGF
Sbjct: 120 AHKLAAEWYAQQLATSPEADTGRIFLAERGFDQAAAVHFGVGYSPQGWDHLTRFLRGKGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           ++++++ +GL    +      DRFR RL++PIR   G V+ FG R L + ++  KYLN+P
Sbjct: 180 ADKELLLSGL--SQEGRRGPIDRFRGRLMWPIRDIGGDVVGFGARKLYESDNGPKYLNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T ++ K + LY    A   + K+ R           ++VEGY DV++   AGV   +++
Sbjct: 238 DTAIYRKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIAT 287

Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            GTA     +++L +L       R++  FDGD  G +AA +A +               +
Sbjct: 288 CGTAFGGDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP       G  A  +L     PL +   ++        TP  RA         +
Sbjct: 345 APDGMDPCELRLAKGDDAVVELTEPRTPLFEFALRQIVARYDLETPAGRAAALDEAAPVV 404

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             IK+   ++  +  +   L  L  +++ +       W ++   +     ++   Q    
Sbjct: 405 ARIKNSGAQHEVAVQLAGMLGILDTQFVVKRVAQLARWARDRGGQGPAPAARHTAQPYES 464

Query: 473 KGKLSKKPSL--------REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
             +    P+L         E  LL   +  P ++   +       +       +   +  
Sbjct: 465 TARPPSGPALTLRNPVFATERELLKLALQRPELVAPAFDAYGVDEFTAAPYAAVRVAIIE 524

Query: 525 DFV-EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               E     P+E   R+ E    + ++ +  ++    +           V + Y     
Sbjct: 525 AGGVEYGAEDPQEYLVRVREAAPDDTVRAMVTELAVEAIM-------RKKVDEVYAGDQL 577

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI--QIHQIESQEAM 637
           +  R R + R+  +++  +A+ TA+G+  + A + + L  +    Q  +    EA+
Sbjct: 578 VTVRRRAVERRVRDVQGSLARATAQGDPAQLAAVQNELWVLQQYDQALRERGAEAL 633


>gi|288916959|ref|ZP_06411331.1| DNA primase [Frankia sp. EUN1f]
 gi|288351668|gb|EFC85873.1| DNA primase [Frankia sp. EUN1f]
          Length = 667

 Score =  363 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 149/670 (22%), Positives = 259/670 (38%), Gaps = 62/670 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +    PI++++G +V           G     CPFHDEK+PSF+   S GF
Sbjct: 16  RIRDADIALVRERSPIADIVGDHVQLRPVG----GGSLVGLCPFHDEKSPSFNVRPSVGF 71

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           ++CF C+  GD  +F+  + G SF E+V+RLA  AG+ L      P        +  L+ 
Sbjct: 72  FHCFGCNEGGDVYAFVRKIDGLSFPEAVERLARRAGITLTYEGGGPTSRAVTSQRQRLLD 131

Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              +AT+F+   L  +   +    +L  RG D  A E F LGYAP S  +L  HL  + F
Sbjct: 132 AHRLATEFYVEQLYSSPDARAGWEFLASRGFDRSAAERFGLGYAPASWDALTRHLLARRF 191

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK--GESVKYLNS 236
           + E++   GL   G       DRF +RL++PIR   G+V+ FGGR L++      KYLN+
Sbjct: 192 TAEELELGGLAKRG-GRGGLIDRFHHRLLWPIRDLGGEVVGFGGRRLAEGSDAGPKYLNT 250

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
            ET LF K + LY    A   + +             +++VEGY DV++   +GV   V+
Sbjct: 251 AETPLFKKARLLYGADLARRDIARRY----------QVVVVEGYTDVMACHLSGVTTAVA 300

Query: 297 SLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
           S GT+     + ++ +        +  ++  FDGD  G  AA +A +     +    +  
Sbjct: 301 SCGTSFGSDHVAIVRRLLMDSDSRTGEVIFTFDGDQAGQAAALRAFEFEERFVT---QTF 357

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
             +   G DP       G  A   L+    PL +   +   +    NT + R        
Sbjct: 358 VAVQPDGLDPCDLWTQRGDAAVRDLVAARQPLFEFAIRGAIDRYDLNTTEGRLAALDAAA 417

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD----------- 458
             +N +KD  +R+ Y+  +   L  L ++++ E     R   + +               
Sbjct: 418 PLVNRLKDAGIRHRYAVNLDRWLGFLDERFVVERVASHRSRAQGSPGAQGSSGAPGSSGA 477

Query: 459 -----------QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                        G +         +    +  ++ E   L   + HP +    +  LA 
Sbjct: 478 HGSTRARGSSGADGTAAAASARRRPEPAPDEATAIVERETLKLALQHPGLAGPMFDTLAA 537

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYF----LPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
             +     + +   + +             P      +      E   +L R V    + 
Sbjct: 538 ELFTVPVHRAVRELIATAGGVCAGLYAAGDPSGWAAAVVAAAPDE---ELRRFVLALAVE 594

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
               +    DV   Y        +   ++R+  E++ ++ ++    +++        L  
Sbjct: 595 GVLCDH---DVDDRYVDDQMSRVQELHVTRRIREVKSRVQRLNPTSDSDAFNRAFGELIA 651

Query: 624 VHIQIHQIES 633
           +     Q+  
Sbjct: 652 LEQHKLQLRE 661


>gi|114328949|ref|YP_746106.1| DNA primase [Granulibacter bethesdensis CGDNIH1]
 gi|114317123|gb|ABI63183.1| DNA primase [Granulibacter bethesdensis CGDNIH1]
          Length = 616

 Score =  363 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 178/642 (27%), Positives = 292/642 (45%), Gaps = 32/642 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    DF+ +L    PI+++IG+ V   +   N     +  CCPFH EKTPSF+  D   
Sbjct: 1   MALSPDFLDELRARTPIASVIGRRVRLSKAGRN-----WKGCCPFHGEKTPSFYVYDDH- 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++CF C V GD +SF+    G  F+E+V++LAA AG+ +P    +  ++ + +  +  +
Sbjct: 55  -FHCFGCGVHGDVVSFVMQSQGAGFLEAVEQLAAEAGLDMPKPSREETRQAEARAGVHEV 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A D++   L     +R   YL +RG+    I  F LG+AP  R SL   +  KG + 
Sbjct: 114 LAQAGDYYATLLSKPEGQRGLTYLLDRGLSEATIRRFGLGWAPV-RGSLAMAMAGKGITP 172

Query: 181 EKIIEAGLLI--DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           E++ EAGLL   +   +   +D+F  R++FPIR  RG++I+FGGR L      KY+N PE
Sbjct: 173 EQLAEAGLLRLDEDGPTRRPWDQFHERVMFPIRDRRGRIISFGGRIL-GDGQPKYVNGPE 231

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K ++LY    A   ++            + ++ VEGYMDV++L QAG    V+ L
Sbjct: 232 TAVFSKRRSLYALDLAREAVR----------GGAALLAVEGYMDVIALHQAGFSGAVAPL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE QL  LW+LSP  +LCFDGD  G RAA +  +L L  L     ++   L  GED
Sbjct: 282 GTALTEEQLDALWQLSPAPILCFDGDAAGARAALRVAELALPLLTTERTLHVARLPPGED 341

Query: 359 PDSFIRCYGKTAFEKLIVES--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           PDS I   G   F  ++ ++      D L+    E ++  TP++RA  +  L +    I 
Sbjct: 342 PDSLISTRGADTFSAVLEDARRRSFADALFAMLREGQALETPEQRAVFQRRLNDAAARIA 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D+ L   Y  A+R++   L +       G                P+   +  +L     
Sbjct: 402 DKTLAAEYRSALREKFYALRRPAAAPRRGGNYGGGSRGSGWQLTQPAPNRLDPALAAEMA 461

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +   R   L   L++HPA+L +  +  A +   +  L ++   + +          E 
Sbjct: 462 GIE---RLRILTAILLSHPALLHDVEEAFATLDLPD-WLDRVRRAILTIPDHTDPLDSEG 517

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN--IVDVRQGYQQALALYKRFRLLSRQ 594
           +   L   G G  ++++           A +       +    +        R R L ++
Sbjct: 518 LIDHLQRAGLGREVERVFAPHPFPLPICAVSGGAVMPAEAEAAWWHIFGFLHRDR-LDQE 576

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +    +   +    +   L+    ++     + +  EA
Sbjct: 577 VMAAQHAWDEHGDEQSQRRLTALVQARDKIRR--GESDDAEA 616


>gi|225021801|ref|ZP_03710993.1| hypothetical protein CORMATOL_01829 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945497|gb|EEG26706.1| hypothetical protein CORMATOL_01829 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 630

 Score =  363 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 130/647 (20%), Positives = 253/647 (39%), Gaps = 44/647 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +     I  +IG+YV      +           PF DEKTPSFH   + G+
Sbjct: 5   RIPNSDIQAIRERAAIEEIIGEYVQLKPSGS----DSLKGLSPFKDEKTPSFHVRPNHGY 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118
           Y+CFS    GD  +FL  +   +F E+V+ +A      +            +   +  LI
Sbjct: 61  YHCFSTGKGGDVFNFLMEMEHLTFPEAVELVADKINYHINYQGGSTGAPAVEPGTRKRLI 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
                A  F+   L+  + +    +L +RG     I  F+ GYAP+   ++ +HL +K F
Sbjct: 121 EANRAAHAFYRKQLETPQAQVARTFLLDRGFSKELIYSFECGYAPEGWDAVTKHLLKK-F 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           +  ++  AGL +         DRFR RL++PI++  G VI FG R L + +   KYLN+P
Sbjct: 180 TFPELEAAGLSV--MGRRGPVDRFRRRLLWPIKNISGDVIGFGARKLFEDDQLGKYLNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K K L+    A   +           SS   ++VEGY DV+++  AGV   V+S
Sbjct: 238 ETLLYKKSKVLFGLDRAKKNIA----------SSRQCVVVEGYTDVMAMHAAGVATAVAS 287

Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA  +  L+++             ++  FDGD+ G +AA +A +          +   
Sbjct: 288 CGTAFGDDHLQMIRRLMLDDTYFRGELIYTFDGDEAGQKAAKRAFEGNQKFTG---QSYV 344

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +     DP       G  A   L+   +P+ + + +    +   +TP+ R +       
Sbjct: 345 AVAPDNLDPCDLRLQKGDAAVRDLVASRVPMFEFMIRAVIADYRLDTPEGRLQAMRRAVP 404

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ------KGPSQ 464
            +  I D+ L+  Y++ +   +  + +  +           +    R           + 
Sbjct: 405 IVASIHDRALQSEYARRLSGWVGWMDEDEVLSQVRVAARNPRPVEPRRAVRFDSDAAVAV 464

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
              Q+ L +          +   L   + +P ++ + +  + +  +     + +   +  
Sbjct: 465 DAPQARLPQPDAKSIQLWPQRESLKLALQYPGVVADGFDAVPEAAFSFETYRVIRHAIAQ 524

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                       +          E +  L  +   + L           V   + + +A 
Sbjct: 525 AGGC-----RAAVVGEWAGMVASE-IDDLIGRSLVSELVVEDIHLQGESVETYWDRTVA- 577

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             + + +S +  +++ ++ ++    + +    + + L  +  Q  Q+
Sbjct: 578 RLQEQQVSNEISQLKSKMQRMRPSDDEQAYRSMFANLIALEQQKKQL 624


>gi|242240772|ref|YP_002988953.1| DNA primase [Dickeya dadantii Ech703]
 gi|242132829|gb|ACS87131.1| DNA primase [Dickeya dadantii Ech703]
          Length = 584

 Score =  363 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 176/630 (27%), Positives = 287/630 (45%), Gaps = 54/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIIDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LAA+ G+ +P        + +   +  L  
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVESIEELAAMHGLEVPYEAGTGPSQLERHQRQSLYE 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+   + F+  +L     +    YL++RG+    I+ F +G  P    ++ +   +    
Sbjct: 119 LMAQLSVFYQQTLDQPAGRAAREYLNKRGLSDDVIKQFAIGCTPSGWDNVLKRFGRSSED 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AG+L+  +    SYDRFR+R++FPIR  RG+VIAFGGR +    + KYLNSPET
Sbjct: 179 RSTLTDAGMLV-TNEQGRSYDRFRDRVMFPIRDKRGRVIAFGGRVM-GDGTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + +            +      +++VEGYMDV++L Q GV   V+SLG
Sbjct: 237 EVFHKGRQLYGLYESQQ----------KHPDLKKLLVVEGYMDVVALAQFGVDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTADHIQLLFRATDQVVCCYDGDRAGRDAAWRALETALPYLDDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  GK AFE+ I +++PL   L+    +    +TPD RA+L       I+ +  + 
Sbjct: 347 DTLVRKEGKAAFEQRIEQAMPLSAFLFDTLLQQVDMSTPDGRAKLSTLALPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q +  +L  L    +            + +    K  +                
Sbjct: 407 LRLYLRQQLGQKLGLLDDSQLDRLMPRISEQASSYQPPRLKVTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                  L+  L+ HP +  E     L  I  +      L+  +     E        + 
Sbjct: 452 -----RILIGLLVQHPRLSAEVPDLSLEGIEENRMPGLSLFLDVVKTCSESPGMSMGLLL 506

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++  +  +   L+ L              +  I  + + Y Q L            ++ +
Sbjct: 507 EKYRDSPYRRQLETLASWNHMIEEEELEEKFRIS-LAELYDQLL------------QQRL 553

Query: 599 EKQIAQVTAKG-EAEKTAILISILHEVHIQ 627
           E  IA+    G  A++   L S+   +  +
Sbjct: 554 EALIARDRTHGLNAQERKELWSLQLALTRK 583


>gi|304403969|ref|ZP_07385631.1| DNA primase [Paenibacillus curdlanolyticus YK9]
 gi|304346947|gb|EFM12779.1| DNA primase [Paenibacillus curdlanolyticus YK9]
          Length = 616

 Score =  363 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 153/640 (23%), Positives = 264/640 (41%), Gaps = 41/640 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +     I   +G+YV   +             CPFH E+TPSF        
Sbjct: 5   RIPDSAIDAVRNAHDIVETVGKYVHLTKNGK-----YMKGLCPFHSERTPSFTVTPELQI 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIR 119
           ++C+ C   G+ + F++ + G SF E+V+ LA  AG+P+   DP       +  +   I 
Sbjct: 60  FHCYGCGKSGNVIRFIAEIEGYSFPEAVRLLAEEAGIPVTWSDPADAGPPADPNRDKQIE 119

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             E+A   +H+ L N  + +    YL +RG+    I+ F +GYAP+S  +L   L  + F
Sbjct: 120 AHELAAKLYHYLLMNTEQGRSALSYLRDRGMSDRLIDQFSIGYAPESWDTLARFLESRQF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +   + + GLL    + +   DRFR R++FPI +  G+VIAF GR L      KYLNSPE
Sbjct: 180 ALPLMEKGGLLSAKQDGSGYVDRFRGRVMFPIWNRDGKVIAFAGRAL-GDGQPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + LF K + LYNF  A   ++K  +          ++L EGYMDV+    AGV N ++++
Sbjct: 239 SPLFTKSRTLYNFNNARPDIRKRRK----------VVLFEGYMDVIKSWSAGVHNGIATM 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT+    +L + +  +++C+DGD+ G  AA KAI +       G  V+  +L  G D
Sbjct: 289 GTALTDEHAVILSRSAEEVIICYDGDNAGRAAAMKAIPM---FEKAGMTVSVAMLPGGMD 345

Query: 359 PDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD  I  YG  AF   ++   +  V        +N      +   +  +     I  +  
Sbjct: 346 PDETIDAYGPDAFLRDVMDHPVSAVKFKLIYSRKNHMLEEDEGLRKYLLEAARIIAEVPS 405

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR-----LMQSSLV 472
              R  Y + +    +        +        +     RD  G S          SS  
Sbjct: 406 AMEREVYMKELHREFEVSLDSLKQDVHAVRETMQNLQAPRDNNGFSWNNGRNEKRSSSSG 465

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
              L       E  LL  ++      +  +  L D  ++  +   L ++L++ + +    
Sbjct: 466 PPTLLPAYQQAERKLLSVMMRDVETARVVHDRLGD-AFNVEDHAALAAYLYAFYAQGHDP 524

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             +     L +         +   + D              +   + + +    R R L 
Sbjct: 525 DVQRFISTLQDDRLESTAASI--LLMDGDFPFN------EQLLDDFIREIRKLPRMRELE 576

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           ++    ++Q+ +    G+  +   + S +  +  Q+   +
Sbjct: 577 QK----KEQLVRAERSGDIAQAVQIASEIIALERQLKGRQ 612


>gi|331085864|ref|ZP_08334947.1| hypothetical protein HMPREF0987_01250 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406787|gb|EGG86292.1| hypothetical protein HMPREF0987_01250 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 591

 Score =  363 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 151/615 (24%), Positives = 266/615 (43%), Gaps = 45/615 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  D ++++ +   I ++I  YV   ++ +      Y+  CPFH EK+PSF  +  K 
Sbjct: 1   MYYSEDIVEEVRMKNDIVDVISGYVKLQKKGS-----SYFGLCPFHSEKSPSFSVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+  +F+      SF+E+++ LA  AGV LP      + ++K  ++  L+
Sbjct: 56  MYYCFGCGAGGNVFTFIMEYENYSFVEALKMLAERAGVELPEMEYSKEAKEKANLKNTLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A  +F+  LK    +  + YL +RG+    I  F LGY+      L + LR+KG+
Sbjct: 116 EMNKLAARYFYSQLKGKNGEHAYRYLTDRGLTDTTITQFGLGYSNKYSDDLYKFLREKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S++ I +AGL I+ D     YD+F NR++FPI  +  +VI FGGR +      KYLNSPE
Sbjct: 176 SDDLIRQAGL-INTDEKHGIYDKFWNRVMFPIMDANNRVIGFGGRVM-GDGKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K +NLY    A              +   + ++ EGYMDV+SL QAG  N V+SL
Sbjct: 234 TLIFDKSRNLYGLHRAR------------TSRKPYFLICEGYMDVISLHQAGFTNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     L+ +    + L +D D+ G +AA +A+ +       G     + +   +D
Sbjct: 282 GTALTAGHASLIKRYVSEVYLTYDSDEAGTKAALRAVPI---LKEAGISAKVIRMDPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AFE+ I ++        +        +TP+ + E        +   +++
Sbjct: 339 PDEFIKNLGAEAFEQRIGKARNGFMFSLEILERQYDMHTPEGKTEFYYEAAKRLAQFEEE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y  A+ +     +       +       K A       P  R   +   + +   
Sbjct: 399 IERNNYIDAVAEAYHIGYDSLRKLVA-------KAAVQSGMASPVARPRTTHAKEQQKED 451

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LL  +I   ++     + +    +     + +   L+  + E+    P +I 
Sbjct: 452 GMLQSQKILLTWMIEDESLFGMIRKYIMPEDFTTELYRTVALLLYEQY-EKGEVSPAKIM 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-------------ALALY 585
               +      +  L           +  E  + +     ++              +   
Sbjct: 511 NHFTDEEEHREVAALFHTKIRELTTKSEQEKALKETIIRVKENSIETATRNLEPTDIVGL 570

Query: 586 KRFRLLSRQKEEIEK 600
           +R     R  ++++K
Sbjct: 571 QRLMESKRAVQDLQK 585


>gi|154498376|ref|ZP_02036754.1| hypothetical protein BACCAP_02365 [Bacteroides capillosus ATCC
           29799]
 gi|150272687|gb|EDM99865.1| hypothetical protein BACCAP_02365 [Bacteroides capillosus ATCC
           29799]
          Length = 596

 Score =  363 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 154/577 (26%), Positives = 255/577 (44%), Gaps = 29/577 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P  FI +L+    IS+++  YV  +++ +N      W  CPFH+EKTPSF  N  K 
Sbjct: 1   MPIPEQFIDELVARSEISDVVSSYVTLNKKGSNL-----WGLCPFHNEKTPSFSVNQDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C   G  +SF+  +   SF ++V+ LA  AG+ +P      +   K +   +  
Sbjct: 56  IYHCFGCGKGGGVISFIMEIENLSFPDAVRFLAKRAGLEVP-DTGSDDAGRKKRARALEA 114

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A  F+H  LK     R+  Y+ +R I       F LG APD   +L + L  KG+S+
Sbjct: 115 NKDAARFYHDYLKGPGGARVREYIAQRQISPRTATRFGLGAAPDQWDALTKALTAKGYSK 174

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            ++I+AGL +    +   YD+FR RL+ P+   RG V  F  R L   E  KYLN+PET+
Sbjct: 175 MELIDAGLAV-AGKNGGIYDKFRARLMLPVIDVRGDVAGFTSRILPGEEGAKYLNTPETV 233

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F KG+ +Y    A N  +              +ILVEG +DV++L QAG  NVV+++GT
Sbjct: 234 VFKKGRLIYALNFAKNTKR------------PNLILVEGNIDVITLHQAGFDNVVATMGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE--- 357
           ALTE   R+L + +  +VLC+D D  G ++  + + ++    +    +        E   
Sbjct: 282 ALTEEHARILARYTKELVLCYDNDPAGKKSTDRVLGILKNADLNVRVLQLPNAYDSEGNP 341

Query: 358 ---DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD FI+ +G  AFEK +  S    D   +   +  S    + R          +  
Sbjct: 342 LKQDPDDFIKRFGAAAFEKCLNGSAGQNDYRLESLLQKHSLADEEGRMAFLREAVETVAS 401

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG---PSQRLMQSSL 471
           ++    R  Y              +  E   Y +     A+ +  +    P+ +L     
Sbjct: 402 LQSPIEREIYGNKAAAAGGISAAAFAQEVERYRKNRAWQAKKKQTRKDLTPAAQLQPRER 461

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                + + +  E  +L  ++  P + Q     L   ++ +  L +++  L + + E + 
Sbjct: 462 ELRYENIRSARAEEGVLRLMLLEPGLFQS-AGALEPEQFSSPLLGRVYGMLRTRWQEGRS 520

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
                +   L       L+  LD+    A    A  +
Sbjct: 521 TQLPALTGELTADEMSHLVHVLDQPESLAHSQKALAD 557


>gi|15595774|ref|NP_249268.1| DNA primase [Pseudomonas aeruginosa PAO1]
 gi|18203017|sp|Q9I5W0|PRIM_PSEAE RecName: Full=DNA primase
 gi|9946448|gb|AAG03966.1|AE004494_2 DNA primase [Pseudomonas aeruginosa PAO1]
          Length = 664

 Score =  363 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 181/678 (26%), Positives = 295/678 (43%), Gaps = 87/678 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I  ++   +   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVEVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLIR 119
           YCF C   G+ L F+       F ++V+ LA  AG+ +P  +        ++   + L  
Sbjct: 60  YCFGCGAGGNALGFVMDHDQLEFPQAVEELAKRAGMDVPREERGGRGHTPRQPTDSPLYP 119

Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL     
Sbjct: 120 LLSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNL 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             + +++AGLL++  ++   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPE
Sbjct: 180 QLKAMLDAGLLVENSDTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG+ LY  + A    +              I++VEGYMDV++L Q G++N V++L
Sbjct: 239 TPVFHKGQELYGLYEARQKNRDL----------DEIMVVEGYMDVIALAQQGIRNAVATL 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +E  ++ L++L P I+ CFDGD  G +AA++A++ VL +L  G RV F+ L  GED
Sbjct: 289 GTATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGED 348

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PDS +R  G+ AF   +  ++ PL +  +++        T + +A L       +  I  
Sbjct: 349 PDSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIPG 408

Query: 418 QKLRYYYSQAIRDRLQQLFQKYIT------------------------------------ 441
             LR    Q + +      +                                        
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDHGASGVLDGDDYFAASAYYENEPS 468

Query: 442 -----EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--------GKLSKKPSLREAA-- 486
                   GY     + + ++D+K    +                    + P   E+   
Sbjct: 469 HAPFDAAPGYVEAQPRKSWNKDKKPWDGKKWDGKKKWDKGGRGDFKAPQRTPVSVESTTL 528

Query: 487 -LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L TL++HP +  +       +  + +   +L   L     +       ++  R     
Sbjct: 529 NALRTLLHHPQLALKVDDA-GTLAREQDTYAQLLVSLLEALQKNPRQSSMQLIARWHGTP 587

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
            G LL+ L  +                ++ + +   +         S++  E E+++  V
Sbjct: 588 QGRLLQALGEKEWLIVQ---------ENLEKQFFDTITKLSE----SQRFGEREERLRSV 634

Query: 606 TAKGEAEKTAILISILHE 623
             K  +E T    ++L E
Sbjct: 635 MQKSYSELTDEEKALLRE 652


>gi|284049112|ref|YP_003399451.1| DNA primase [Acidaminococcus fermentans DSM 20731]
 gi|283953333|gb|ADB48136.1| DNA primase [Acidaminococcus fermentans DSM 20731]
          Length = 603

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 173/635 (27%), Positives = 282/635 (44%), Gaps = 54/635 (8%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           +F + +     +  ++ + V   RR T      YW CCPFH EKTPSF  + ++G ++CF
Sbjct: 10  NFKEQVRQAADLLTIVSETVSLKRRGTQ-----YWGCCPFHGEKTPSFKVDPARGLFHCF 64

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRLIEV 123
            C   GD  S++      +F E++++LA   G+P+P       +  +EK   +++   ++
Sbjct: 65  GCGAGGDVFSYVMKRDNLTFPEALKQLAEKYGIPVPERAKSAREIAREKESREVMGANDL 124

Query: 124 ATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A+ FFH  L      +R   YL  RGI    I+ F LG AP    +L   L ++G +EE 
Sbjct: 125 ASRFFHSCLVNTRYGERGIQYLAGRGIGRDIIDSFGLGLAPPDFQTLSTALEKRGVTEEV 184

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETIL 241
           +++AGL+         YD+FR R++ PIR  RG+V+ F GR L K     KY+N+PET  
Sbjct: 185 LLKAGLVSPRQRGTRVYDKFRARVMIPIRDPRGRVVGFTGRILDKDASPAKYMNTPETAW 244

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHKG  L+    A   ++K              ++VEG+MD +SL  AG+   V+S+GTA
Sbjct: 245 FHKGNLLFGLDRASGPIRK----------RQQALIVEGHMDAISLHAAGIDWAVASMGTA 294

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            TE+Q  LL +L+P +V CFD D  GL AA +AI L L     G +   + ++ G+DPD 
Sbjct: 295 FTEHQAALLKRLTPEVVFCFDSDRAGLAAAMRAIPLAL---QAGLKCRVMHVTDGKDPDE 351

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           FIR  G+ AFE+L+  + P +D             T   + E    +       +     
Sbjct: 352 FIRKEGREAFEELLNNAKPGMDYQVDTVLGECDLETLGGKVEAVDKVLPLFRDCQSDVEV 411

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + +  RL        +E+        +   H++  G +      +  K K++    
Sbjct: 412 GERIRELSRRLAIDEGLIQSEY--------RKLTHQESGGRAYNPEWLTQQKVKVTSPTE 463

Query: 482 LREAALLLTLIN----HPAILQEQYQELADIR-YDNNELQKLWSFLFSDFVEQKYFLPEE 536
             E  +L   +      P       + +A +  + +   Q +++       E  Y  P +
Sbjct: 464 QAERLVLRAFLEGIPPRPG-----QEGIAHVDSFTSPSRQAIFTTFLRMVQEGTYKDPRD 518

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +   L + G GEL   L   V    L S                 L    +   L R+  
Sbjct: 519 LFPHLDDAGAGELTGILTLNVEKGTLPSI------------LADCLR-RLQIAALDREY- 564

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           E   Q+A+   K   EK    ++    + ++I ++
Sbjct: 565 EKHSQLAEKYEKEGNEKFLQELAECRRIKMEIGKL 599


>gi|27468167|ref|NP_764804.1| DNA primase [Staphylococcus epidermidis ATCC 12228]
 gi|57867103|ref|YP_188704.1| DNA primase [Staphylococcus epidermidis RP62A]
 gi|282876012|ref|ZP_06284879.1| DNA primase [Staphylococcus epidermidis SK135]
 gi|293366477|ref|ZP_06613154.1| DNA primase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|38605275|sp|Q8CP23|PRIM_STAES RecName: Full=DNA primase
 gi|78099125|sp|Q5HNY6|PRIM_STAEQ RecName: Full=DNA primase
 gi|27315713|gb|AAO04848.1|AE016748_82 DNA primase [Staphylococcus epidermidis ATCC 12228]
 gi|57637761|gb|AAW54549.1| DNA primase [Staphylococcus epidermidis RP62A]
 gi|281295037|gb|EFA87564.1| DNA primase [Staphylococcus epidermidis SK135]
 gi|291319246|gb|EFE59615.1| DNA primase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329735177|gb|EGG71469.1| DNA primase [Staphylococcus epidermidis VCU045]
 gi|329737410|gb|EGG73664.1| DNA primase [Staphylococcus epidermidis VCU028]
          Length = 598

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 157/635 (24%), Positives = 281/635 (44%), Gaps = 41/635 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSVIDEIKNKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV---VDPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     + + +         K    +  +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDVSFVEAVKDLGERVNIQVDIGQNQTNSSTKIASDELKM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  D++H++L K    +    YL ERG     I+  ++GYAPD+ +   + L +K
Sbjct: 116 IEMHELIKDYYHYALMKTVEGEEALNYLHERGFTDDLIKEREIGYAPDNSHFCHDFLEKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + T +DRFRNR++FP+++ +G+++ + GRT    +  KYLNS
Sbjct: 176 GYDIELAFEAGLLSRNEENFTYFDRFRNRIMFPLKNGQGRIVGYSGRT-YTDQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K + LYN   A  +++K             IIL+EG+MDV+    AG++ VV+
Sbjct: 235 PETPIFQKRRILYNLNKARKFIRKQ----------DEIILLEGFMDVIKSDYAGLKQVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S+GT L++  +  L KL+  + L FDGD  G  A  K        L  G  V  V L  G
Sbjct: 285 SMGTQLSQEHITFLQKLTQNVTLMFDGDYAGKEATLKTGQ---ALLNQGLNVYVVQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +IR Y    F K + +      +   +  +N   +      +        ++ + 
Sbjct: 342 MDPDDYIRKYDNEQFLKFVQQDKQSFVLFKVKMYQNEINHNDLAYEKHFKETVRDLSLVN 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              +R    Q I D  +   +    E     ++        +     Q       +    
Sbjct: 402 SGIIRNKLIQNIADIFKVNPETIQYELDATYQHQM----SSNTYPTFQDEPSKQQLILGR 457

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             K    E AL+  L          YQ++    + N+ L++++S+L+  + +  Y+   +
Sbjct: 458 LTKNEKAERALIKHLTKDKDTFLNYYQKIVPEDFTNSYLKRIFSYLYDYYSKNDYYTISD 517

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + Q +      E+L +LD+   +        +    +  + Y Q +        L     
Sbjct: 518 MMQYIESNELREVLIELDQYHLN--------DEPYENEIEDYIQIIKNNNNEDSLE---- 565

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            +  ++ + +  G++E     + ++  V+   +++
Sbjct: 566 SLNYKLREASRIGDSELQKYYLQLI--VNKNKNRM 598


>gi|229086863|ref|ZP_04219023.1| DNA primase [Bacillus cereus Rock3-44]
 gi|228696438|gb|EEL49263.1| DNA primase [Bacillus cereus Rock3-44]
          Length = 598

 Score =  362 bits (929), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 158/636 (24%), Positives = 274/636 (43%), Gaps = 50/636 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G SFIE+VQ+L     + +       E++E I  D   ++
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLSFIEAVQKLGERNNISVVDYTSGQEQQENISDDSVIML 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL  RGI    I  F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIAKFEIGYASPAWDAAAKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           FS   + +AGLL+  +   + +DRFR R++FPI + +G+V AF GR L   ++ KYLNSP
Sbjct: 179 FSLATMEQAGLLVRSERDGSHHDRFRGRVMFPIHTLQGKVAAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A ++++K             ++L EGY DVL+  ++G++  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARSFIRK----------RGQVVLFEGYADVLAAVKSGIEESVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    +  G  V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LVQVGCHVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TAFE L+  S+  V          ++      + E    +   +  ++D
Sbjct: 345 DPDEYVQQYGTTAFENLVKASISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELALLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +++        +  + +   Y +  K   +   Q     +++Q         
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLGQLHQYRKEQKVQQKQTKQISKPPQIVQ----AKPKF 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  L+  ++    +       +    +   E + +   L++ + +         
Sbjct: 461 SGFERAERELIYHMLQSAEVAFRIEPHIE--DFHTEEHKGILYELYAYYEKGNEPSVGNF 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     ++  +      +       E               L      LSR K++
Sbjct: 519 LSWLSDEKMKNIITNI------STDEFINPEYTDE----------VLQGHLEALSRHKQK 562

Query: 598 IEKQ-----IAQVTAKGEAEKTAILISILHEVHIQI 628
           ++K      I Q+      E     ++ L     + 
Sbjct: 563 LKKMETIFTIKQMEKTDPVEAAKFYVAYLQNQKTRR 598


>gi|104779688|ref|YP_606186.1| DNA primase [Pseudomonas entomophila L48]
 gi|95108675|emb|CAK13369.1| DNA primase [Pseudomonas entomophila L48]
          Length = 660

 Score =  362 bits (929), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 174/675 (25%), Positives = 294/675 (43%), Gaps = 85/675 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N       ACCPFH EK+PSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKTGKNLS-----ACCPFHKEKSPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P  + +   + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREEGRRGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +E A +F+  +L+N    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LEAAAEFYRQALRNHPTRKAAVEYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   S   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAESGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLYEARKHNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G +AA++A++  L  L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSSLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           DS +R  G  AF+  +   +  L D  +++ +      + + +A +       I  +   
Sbjct: 349 DSLVRAEGTDAFQARINQHAQSLADYFFEQLSNEADPRSLEGKAHMAALATPLIEQVPGA 408

Query: 419 KLRYYYSQAIR----------DRLQQLFQK------------------------------ 438
            LR      ++          +RL++                                  
Sbjct: 409 NLRQLMRNRLKEITGLDAQQTERLRKDTPPPSLPSHNLAPDYNYPSEIDYGHYGDPAPPD 468

Query: 439 --------YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
                        S       ++ +        +           +           + T
Sbjct: 469 YSADAHGYQEWTPSKGSSKKPRDGKSWKGGKNWKDGEWRREPPQWVPVAVEPPIRIAIRT 528

Query: 491 LINHPAILQEQYQELADIRYDNN--ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           +++ PA+  +         + +   E  +L   +     ++      E+  R     +G 
Sbjct: 529 VLHRPALALKVEDA---SNFADEKSEDGQLLISVVQSVQKKPELSSMELMARCHGTQYGA 585

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           +L+ +  +           + N+          L+  +R R L R     + ++ ++   
Sbjct: 586 MLRSMAEK------EWLIEDQNLEQQFFDTINRLSATQRERGLERLIS--KSRLTKL--- 634

Query: 609 GEAEKTAILISILHE 623
            + ++ A L+ +L  
Sbjct: 635 -DEDENAKLLDLLRR 648


>gi|300854007|ref|YP_003778991.1| putative DNA primase [Clostridium ljungdahlii DSM 13528]
 gi|300434122|gb|ADK13889.1| predicted DNA primase [Clostridium ljungdahlii DSM 13528]
          Length = 590

 Score =  362 bits (929), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 168/630 (26%), Positives = 279/630 (44%), Gaps = 41/630 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D I+ +     I ++I + V   R   N     Y   CPFH EKTPSF  +  K  Y
Sbjct: 2   ISEDVIQKIKDASDIVDIISESVKLKRAGRN-----YLGLCPFHQEKTPSFSVSVDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ ++F+  L   +F E+++ LA  A + L     +   ++     L +L  
Sbjct: 57  KCFGCGEAGNVITFVMKLKKLTFPEALKILADRANIDLDENGNRNGNRKNTYEKLYKLNI 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F++ L     K    Y+  RGI    +  F +GY+ DS   +   L++KGF+E  
Sbjct: 117 EAARYFYNCLNKN--KIAKSYMLNRGITEKTMNKFGIGYSVDSWNDMLIFLKKKGFTELD 174

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++  GL+I        YDRFRNR+IFP+   RG+VI FGGR L      KYLNSPET LF
Sbjct: 175 MLSDGLIIKSKKG-NYYDRFRNRIIFPVFDFRGKVIGFGGRVL-DDSKPKYLNSPETHLF 232

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG NLY    A+             N+S   I+VEGYMD +SL Q G+ N V+SLGTAL
Sbjct: 233 KKGINLYGLNFAIK-----------NNTSRMFIIVEGYMDCISLHQYGITNAVASLGTAL 281

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q +L+ +   ++++ +D D  G  A  + +D+       G  V  +++ +G+DPD F
Sbjct: 282 TINQAKLMARYVDKVIISYDADAAGQIATVRGLDI---LKSVGLEVRVLVVPQGKDPDEF 338

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           IR  GK AF +L+ ++LPL++   +    N +FN  ++  +        ++ + D   R 
Sbjct: 339 IRNNGKDAFLELVDKALPLIEYRIQNIKSNMNFNDSEDTIKYVEKALKILSQL-DPIERE 397

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y ++I +      Q      +        N +   +K     +      K  L      
Sbjct: 398 IYVKSISEETGIRDQVLYDMLND-------NIQKNVKKNEKVNIDAGFGQKLYLEPAYLK 450

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E ALL  +  +    +    ++          +K++ ++     E   +  E+  + + 
Sbjct: 451 AERALLKLISENEEAFKYALDKIEVDNIILESHKKIYRYIV----ENMKYDIEKRKKFVE 506

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                  +      V            N  D+   Y   +  ++    L + K+ I  +I
Sbjct: 507 LNCHD--VDTSKEWVNIMETKIKYDSINYKDMIDNYIDKIERHR----LEKSKKHIINRI 560

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +  A+G   ++  L   L ++  +I +++
Sbjct: 561 KECEAQGNLNESLKLAQELIKIQKRIGEMQ 590


>gi|145223309|ref|YP_001133987.1| DNA primase [Mycobacterium gilvum PYR-GCK]
 gi|315443769|ref|YP_004076648.1| DNA primase [Mycobacterium sp. Spyr1]
 gi|145215795|gb|ABP45199.1| DNA primase [Mycobacterium gilvum PYR-GCK]
 gi|315262072|gb|ADT98813.1| DNA primase [Mycobacterium sp. Spyr1]
          Length = 647

 Score =  362 bits (929), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 134/652 (20%), Positives = 249/652 (38%), Gaps = 42/652 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +   + I +++G YV   R             CPFHDEK+PSFH   + G 
Sbjct: 11  RIPDRDIAAIRERVNIEDVVGDYVQLRRAGA----DSMKGLCPFHDEKSPSFHVRPNHGH 66

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118
           ++CF C   GD  +FL  +   SF+E+V+ LA   G  +         +++    ++ L+
Sbjct: 67  FHCFGCGEGGDVYAFLQKIEHVSFVEAVELLADRVGYTVTYTGGSTTNVQRDRGSRSRLL 126

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
                A +F+   L++        YL +R  D+ A   F  G+AP    +L +HL +KGF
Sbjct: 127 AANAAAQEFYAEQLQSEEAALARQYLLDRNFDAAAATKFGCGFAPSGWETLTKHLLRKGF 186

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
             +++  AGL  +        DRF  RL++PIR+S G+VI FG R +   + +  KY+N+
Sbjct: 187 EFKELEAAGLSRE--GRRGPMDRFHRRLLWPIRASGGEVIGFGARRIFDDDPMEAKYVNT 244

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET+L+ K   L+    A   + K+ R           ++VEGY DV+++  AG    V+
Sbjct: 245 PETVLYKKSSVLFGLDLAKRDIAKAHRA----------VVVEGYTDVMAMHLAGETTAVA 294

Query: 297 SLGTALTEYQLRLLWK-----LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           S GTA  +  L LL +        R  L F  D      A           + G     V
Sbjct: 295 SCGTAFGDSHLSLLRRLMMDDNWYRGELIFVFDGDAAGQAAALKAFDGDQQVAGKSFVAV 354

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE--RAELEIHLK 409
             + G DP       G  A   L+   +P+ +   +    +      D   + +      
Sbjct: 355 -AADGMDPCDLRLKSGDGALRDLVARRIPMFEFAVRSLIPSGDILDNDPHAKVDALRQCV 413

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKY---ITEHSGYGRYWKKNARHRDQKGPSQRL 466
             ++ I+D  LR  Y++ +        +             R   +  R R  + P+   
Sbjct: 414 PLVSRIRDYALRDEYARRLAGWTGWSDESQVLSRVREEAAKRGMPERGRRRGAEQPAAPR 473

Query: 467 ----MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
                     +   +      +   L + +  PA+    +  L    + +     + + +
Sbjct: 474 GVAAPAPGASRPDPADPTLWPQREALKSALQFPALAGPVFDSLTAESFTHPGYAAVRAAI 533

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            +           +  + + ++        L  ++    +          +    Y  ++
Sbjct: 534 GAAGGTSAGLSGAQWIEAVRDQATSPPASSLINELGVEAIN------ADDERLPRYIGSV 587

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               +   + RQ  E++ ++ +++   + ++   L   L  +      +  Q
Sbjct: 588 LARLQEVWIGRQIAEVKSKLQRMSPVEQGDEYHALFGDLVAMEAYRRSLLEQ 639


>gi|238924710|ref|YP_002938226.1| DNA primase [Eubacterium rectale ATCC 33656]
 gi|238876385|gb|ACR76092.1| DNA primase [Eubacterium rectale ATCC 33656]
 gi|291526135|emb|CBK91722.1| DNA primase [Eubacterium rectale DSM 17629]
 gi|291527131|emb|CBK92717.1| DNA primase [Eubacterium rectale M104/1]
          Length = 590

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 148/633 (23%), Positives = 252/633 (39%), Gaps = 51/633 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y  + I+++     I ++IG YV   ++ +      Y+  CPFH+EKT SF  + +K  Y
Sbjct: 4   YSDELIEEVRSRNDIVDVIGSYVHLQKKGS-----TYFGLCPFHNEKTGSFSVSPNKQMY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           YCF C   G+  +FL      +F E++Q LA   G+ LP         ++   +T L+ +
Sbjct: 59  YCFGCGAGGNVFTFLMQYENFTFPEAMQELADRVGIELPKQEMTSAQRREADRRTQLLEI 118

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A  +F+  L+  R +R H Y  +R +    ++ F LGY+      L ++LR KG+ +
Sbjct: 119 NKEAAKYFYMLLRGPRGQRAHEYFKKRELSDETMQKFGLGYSDQYSDDLYKYLRSKGYDD 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E + E GL+   +     +D+F NR +FPI     +VI FGGR +      KYLNSPET 
Sbjct: 179 EILKETGLVTIDEVRGG-HDKFWNRAMFPIMDVHNRVIGFGGRVM-GDGEPKYLNSPETK 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K +NLY    A                 + ++L EGYMDV++L QAG  N V+SLGT
Sbjct: 237 IFDKSRNLYGLNIAR------------STRKNQLLLCEGYMDVIALHQAGFDNAVASLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT     LL + +  + L +D D  G++AA +AI +       G     + +   +DPD
Sbjct: 285 ALTSGHASLLKRYTNEVYLTYDSDGAGVKAALRAIPI---LKEVGITTKVINMRPYKDPD 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FI+  G   +E+ I ++        +        + P+ +      +   +    ++  
Sbjct: 342 EFIKALGAQEYEERIKKAENSFMFQIRIMQAGYDMDDPESKTAFYNEIAKKLLGFTEELE 401

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y+QA+       +       +                 P  +L      K K     
Sbjct: 402 RTNYTQAVSREYSIPYDDLRKLVNSMAMKG-------GIVKPQTKLKSGINEKNKKEDGM 454

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              +  LL  LI   ++       ++   +      K+   +FS +       P  I   
Sbjct: 455 KQSQKLLLTWLIEDNSLFDRIKGRISADDFTEELYHKVAKEVFSQYETTHTVNPARIVSM 514

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             +      +  L                          Q      +   L      I++
Sbjct: 515 FTDEDEQREVAGLFN--------------------ATIHQVEGKNDKATALRETVVRIKQ 554

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                 +K  A      +  + E    + +++ 
Sbjct: 555 NSIDYRSKHLAPTDMEGMMRIIEDKRALEELQK 587


>gi|325662014|ref|ZP_08150633.1| hypothetical protein HMPREF0490_01371 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471677|gb|EGC74896.1| hypothetical protein HMPREF0490_01371 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 591

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 151/615 (24%), Positives = 266/615 (43%), Gaps = 45/615 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  D ++++ +   I ++I  YV   ++ +      Y+  CPFH EK+PSF  +  K 
Sbjct: 1   MYYSEDIVEEVRMKNDIVDVISGYVKLQKKGS-----SYFGLCPFHSEKSPSFSVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+  +F+      SF+E+++ LA  AGV LP      + ++K  ++  L+
Sbjct: 56  MYYCFGCGAGGNVFTFIMEYENYSFVEALKMLAERAGVELPAMEYSKEAKEKANLKNTLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A  +F+  LK    +  + YL +RG+    I  F LGY+      L + LR+KG+
Sbjct: 116 EMNKLAARYFYSQLKGKNGEHAYRYLTDRGLTDITITQFGLGYSNKYSDDLYKFLREKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S++ I +AGL I+ D     YD+F NR++FPI  +  +VI FGGR +      KYLNSPE
Sbjct: 176 SDDLIRQAGL-INTDEKHGIYDKFWNRVMFPIMDANNRVIGFGGRVM-GDGKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K +NLY    A              +   + ++ EGYMDV+SL QAG  N V+SL
Sbjct: 234 TLIFDKSRNLYGLHRAR------------TSRKPYFLICEGYMDVISLHQAGFTNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     L+ +    + L +D D+ G +AA +A+ +       G     + +   +D
Sbjct: 282 GTALTAGHASLIKRYVSEVYLTYDSDEAGTKAALRAVPI---LKEAGISAKVIRMDPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AFE+ I ++        +        +TP+ + E        +   +++
Sbjct: 339 PDEFIKNLGAEAFEQRIGKARNGFMFSLEILERQYDMHTPEGKTEFYYEAAKRLAQFEEE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y  A+ +     +       +       K A       P  R   +   + +   
Sbjct: 399 IERNNYIDAVAEAYHIGYDSLRKLVA-------KAAVQSGMASPVARPRTTHAKEQQKED 451

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LL  +I   ++     + +    +     + +   L+  + E+    P +I 
Sbjct: 452 GMLQSQKILLTWMIEDESLFGMIRKYIMPEDFTTELYRTVALLLYEQY-EKGEVNPAKIM 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-------------ALALY 585
               +      +  L           +  E  + +     ++              +   
Sbjct: 511 NHFTDEEEHREVAALFHTKIRELTTKSEQEKALKETIIRVKENSIETATRNLEPTDIVGL 570

Query: 586 KRFRLLSRQKEEIEK 600
           +R     R  ++++K
Sbjct: 571 QRLMESKRAVQDLQK 585


>gi|229013515|ref|ZP_04170649.1| DNA primase [Bacillus mycoides DSM 2048]
 gi|228747752|gb|EEL97621.1| DNA primase [Bacillus mycoides DSM 2048]
          Length = 600

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 153/632 (24%), Positives = 276/632 (43%), Gaps = 42/632 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD----- 116
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++++         
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYKSGQGQQQQEDISDDTVI 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           + +  E+   ++HH L           YL +RGI    IE F++GYA  +  +  + L++
Sbjct: 119 MQQAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASQAWDAATKILQK 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G S   + +AGLL+  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLN
Sbjct: 179 RGLSLSSMEQAGLLVRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F+K K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V
Sbjct: 238 SPETPIFYKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAV 287

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +++GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L  
Sbjct: 288 ATMGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD +++ YG TAFE L+  S+  V          ++      + E    +   ++ +
Sbjct: 345 KLDPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLL 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +D      Y +++        +  + +   Y +  K   +   Q     +++Q+      
Sbjct: 405 QDAMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVSKPSQIVQT----KP 460

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E  ++  ++    +       +    +   E + +   L++ + +       
Sbjct: 461 KLTGFERAEREIIYHMLQSAEVTVRMEPHIE--DFYTEEHKGILYELYAYYEKGNEPSVG 518

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                L +     ++  +      +       E     ++   +   AL +    L +  
Sbjct: 519 TFLSWLSDEKLKNIITDI------STDEFINPEYTEEALQGHLE---ALRRHKEKLEKM- 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            EI  ++ Q+      E     ++ L     +
Sbjct: 569 -EIIFKVKQMEKTNPVEAAKYYVAYLQSQKAR 599


>gi|268316540|ref|YP_003290259.1| DNA primase [Rhodothermus marinus DSM 4252]
 gi|262334074|gb|ACY47871.1| DNA primase [Rhodothermus marinus DSM 4252]
          Length = 619

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 175/639 (27%), Positives = 288/639 (45%), Gaps = 41/639 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P + I+ +   + I  ++G+YV   RR  N     ++  CPFH+EKTPSF  N   G
Sbjct: 1   MRIPEETIEAIRTAVDIVEVVGEYVSLRRRGAN-----WFGLCPFHEEKTPSFSVNPHLG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            + CF C   GD  +F+  +   SF+E+V+ LA  AG+PLP      E+ +  +  L   
Sbjct: 56  IFKCFGCGRGGDVFAFIQQIEHVSFVEAVRMLAERAGIPLP---DGEEEADDPRPALYHA 112

Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A  F+   L ++   +    YL +RGI   A+  F LGYAP++  +L +   + G  
Sbjct: 113 LRFAARFYFEQLTQSEAGQVARAYLKQRGIHPEAVRRFGLGYAPNAWDALLKAATEAGIR 172

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPE 238
            E + +AGL++        YDRFR+RL+FPI S  G+V+ FGGR L    E  KY+N+PE
Sbjct: 173 PEVLEQAGLVLPRKERGGYYDRFRHRLMFPIFSHTGRVVGFGGRLLEPDPEQPKYINTPE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++HKG+ LY  + A   L+          +    ILVEGY DV++L QAG+++VV++ 
Sbjct: 233 TPVYHKGRILYGLYQARQALR----------TQEEAILVEGYTDVIALHQAGIEHVVATS 282

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT  Q RLL +   R+VL FD D  G +AA ++I+L    L  G  V  V L  GED
Sbjct: 283 GTALTPDQARLLARYVRRVVLLFDADAAGQQAALRSIEL---FLERGLNVYVVSLPPGED 339

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PDSF+R  G  AF++ L       V   ++        +TP+  AE+   + + I  + D
Sbjct: 340 PDSFVRAKGARAFQEYLRQRRRDFVTFHYELARRQGRLDTPEGEAEVARTIVSAIARLPD 399

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             LR  Y +   + L+    + +           + A                      S
Sbjct: 400 PLLREPYVRRAAELLRIQQVRLLEILEAQLTPSSREAPPPAPS---------PSTPPPTS 450

Query: 478 KKPSLREAALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                 E  L+  ++     ++      +A   +     ++L + L   +          
Sbjct: 451 PTWHEAERLLVRLMLEEGRPMVAFVLGHMALEEFTEGPPRQLIARLLEQYEAGAVDARPF 510

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL--LSRQ 594
           +  R         ++ L      +  W     +      + Y+ A     R +L  +   
Sbjct: 511 LEGRYGPEVQRLTVEALMEPYEPSENWERKGISVPRLRDRAYEAAADAMVRLKLQRIDEM 570

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILH---EVHIQIHQ 630
              ++++  Q+  + +  +   +I+ L+   ++  QI +
Sbjct: 571 IHRLKEE--QLRTRHDEARVREIIARLNHILQLRRQIER 607


>gi|166030948|ref|ZP_02233777.1| hypothetical protein DORFOR_00629 [Dorea formicigenerans ATCC
           27755]
 gi|166029215|gb|EDR47972.1| hypothetical protein DORFOR_00629 [Dorea formicigenerans ATCC
           27755]
          Length = 591

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 148/615 (24%), Positives = 260/615 (42%), Gaps = 38/615 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP + ++++     I ++I  YV   ++ +      Y+  CPFH+EK+PSF  +  K 
Sbjct: 1   MYYPEELVEEIRSKNDIVDVISSYVRLQKKGS-----SYFGLCPFHNEKSPSFSVSRQKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLI 118
            YYCF C   G+  +FL      SF+E+++ LA  AGV L  P    + +K+   +  L+
Sbjct: 56  MYYCFGCGAGGNVFTFLMEYEHYSFVEALKYLADRAGVELPEPEYSGEAKKRADTKAILL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + + A  +F+  L   +      YL +R +    I+ F LGY+      L ++L+ KG+
Sbjct: 116 EINKAAAQYFYVQLLRPQGGHALTYLKDRKLSDDTIKAFGLGYSNKYSDDLYKYLKSKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            ++ I +AGL I  D     +D+F NR++FPI     +VI FGGR +      KYLNSPE
Sbjct: 176 KDDMISQAGL-ISIDEKYGVHDKFWNRVMFPIMDVNSRVIGFGGRVM-GDAKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TI+F K +NLY    A    +             + +L EGYMDV+SL QAG  N V+SL
Sbjct: 234 TIIFDKSRNLYGLNRARKSRK------------PYFLLCEGYMDVISLHQAGFTNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     L+ +    + L +D D+ G +AA +A  +       G     + +   +D
Sbjct: 282 GTALTPGHAALIKRYVNEVYLTYDSDEAGTKAALRAGPI---LREVGITAKIIRMEPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AFE+ I ++        +    +    +P+ R +        +    ++
Sbjct: 339 PDEFIKNLGAEAFEERIQKARNGFMFSLEILERDYDMTSPEGRTDFMKEAARKLTEFDEE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y  A+        +              + A       P +R   +         
Sbjct: 399 IERNNYIDAVAGTYHVGSEDLKKLVG-------RMAVQTGLAKPVERPRSTRSQNLDKED 451

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LL  + +   +  +  + +    +     + +   L++   EQ    P +I 
Sbjct: 452 GTRKSQKILLTWMASDENVFAQIQKYIHPEDFQEGIYRTVAELLYAQ-HEQGKLNPAQIM 510

Query: 539 QRLCER----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-- 592
               +         L     R+++ A       +  I+ V++   +  +       +   
Sbjct: 511 NHFTDEEEHREVAALFNTRIREIKTAHEQEKALKETIIRVKKNSIEEHSAKLDPTDIQGL 570

Query: 593 RQKEEIEKQIAQVTA 607
           ++  E ++ +  +  
Sbjct: 571 QKLMEAKRALQDLEK 585


>gi|291542494|emb|CBL15604.1| DNA primase, catalytic core [Ruminococcus bromii L2-63]
          Length = 588

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 156/636 (24%), Positives = 281/636 (44%), Gaps = 55/636 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F++DL +   I++++  YV+  RR  N         CPFH EKTPSF+     G
Sbjct: 1   MAFPESFLQDLKMRNDITDVVSGYVNLKRRGRN-----MVGLCPFHGEKTPSFNVYTENG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            +YCF C V GD +SF+  +    ++++V+ LA  AG+ +P          +++  +   
Sbjct: 56  SFYCFGCGVGGDVISFIMKIENLDYVDAVKYLAQRAGLEMPENSYDDS-MSRLRNRVFEA 114

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A  F++ +L + + ++   Y   R +    I  F LGYA D+  SL  HL+ KGF++
Sbjct: 115 NREAARFYYAALCSPQGRKGLDYFHSRALSDRTIRHFGLGYADDNWSSLCNHLKSKGFND 174

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            +++ A L +   N    YDRF +R++FPI   RG VIAFGGR +      KYLN+ +T 
Sbjct: 175 SELVAANLAVRHRNGNGIYDRFTDRVMFPIIDLRGNVIAFGGR-IMSDAKPKYLNTSDTP 233

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K  NL++   A N  ++             +IL EGYMDV+++ QAG  N V++LGT
Sbjct: 234 VFKKSANLFSLNNAKNSGKR------------TLILCEGYMDVIAVNQAGFTNAVATLGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q  L+ + +  +++C+D D+ G +A  +AI +       G  V  + +  G+DPD
Sbjct: 282 ALTGEQAVLMKRYADEVIICYDADEAGQKATARAIPI---LRNSGLNVKVLTIPSGKDPD 338

Query: 361 SFIRCYGKT---AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
            FI+  G     AF+ L+ +    V+   ++     +    + +          I  I  
Sbjct: 339 EFIKSKGNDGPAAFKALLDKCGNDVEYRLQKLKNAHNIQLTEGKVAFLEEAAKLIATISS 398

Query: 418 QKLRYYYSQAIRDRLQQL---FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
              R  YS  +   L      F++ ++  S  G   ++  + R  +    R       + 
Sbjct: 399 PIERDVYSSKVASELGVDKNAFKQQVSRVSRRGERAEEKKQARQIQLELSRRNDKINPEH 458

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
               + S  E ALL+ L+N+P   +E    +   ++ N  +++ + +  +     +  L 
Sbjct: 459 FQKPRSSSAEEALLVYLLNNPDAYEEISARVKPEQFQNTLMRRFFEYFSARIERGEDPLT 518

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                   +                  +  A   A+  +    Y   +            
Sbjct: 519 NTAADFTQDENSK----------LYQLMSQAIPGASTAEAMNEYINVIN----------- 557

Query: 595 KEEIEKQIAQVTAKGEAEKT-AILISILHEVHIQIH 629
                ++ +++ +   A+ +   L++ L ++  +  
Sbjct: 558 -----EESSKLNSGDLADVSNEELMAYLDKIRKKKQ 588


>gi|85708549|ref|ZP_01039615.1| DNA primase [Erythrobacter sp. NAP1]
 gi|85690083|gb|EAQ30086.1| DNA primase [Erythrobacter sp. NAP1]
          Length = 617

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 181/631 (28%), Positives = 296/631 (46%), Gaps = 32/631 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M     +  +L   I +S++I +     R        ++ ACCPFHDEK+PSF+ ND K 
Sbjct: 1   MAITPQWKDELRARITLSSVIMRTTKLTRAGR-----EWKACCPFHDEKSPSFYVNDQKS 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF C   GD +S+++   G SFI++ + LA+ AG+ +P  DP   K+ + + +L+ +
Sbjct: 56  FYHCFGCGAHGDVISWMTEQRGLSFIDACKELASEAGMEVPAPDPVAAKRAEKRAELVDV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A ++F  +L+    +    YL +RG+    +  F  GYAP+S+ +L   L +     
Sbjct: 116 TTEAQEWFVQNLREEVGREALDYLKKRGLKPETLREFGFGYAPESKQALPNALPRFEDQM 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPET 239
                   +    +  T+YDRFR R++ PI+ +RG+VIAFGGR L K E   KYLNSP+T
Sbjct: 176 LVETG---MRIRTDDGTTYDRFRGRVMLPIQDTRGRVIAFGGRILGKREGVAKYLNSPDT 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LF KG+NLYN   A    ++S R          +I+VEGYMDV++L QAG ++ V+ +G
Sbjct: 233 PLFDKGRNLYNIHRAAPASRQSGR----------VIVVEGYMDVVALAQAGFEDAVAPMG 282

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE QL +LW++    VLCFDGD  G +AA +AI   L  L P   +  V L  G DP
Sbjct: 283 TALTEMQLEMLWRMVEVPVLCFDGDAAGQKAAMRAIGRALPLLAPMRSLGIVTLPTGLDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D  I   G  A EKL+ + + L+D LW+ E + +   +P+ +A L+  L   ++ I+D+ 
Sbjct: 343 DDLINEQGPGAMEKLLAQPMSLLDFLWQAERDAQPLASPEAKAGLKARLMAHVDTIEDRD 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           ++  Y + + DR                +   +    +          +S+L +     +
Sbjct: 403 IQALYRRELLDRFSAFAFPPREPRQRQQKGAWQ--SFKAVPKGLSPEARSTLQRAMGGGQ 460

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +  ++A++  LI  P  ++   + L  +   + +       L           P  I  
Sbjct: 461 RAGFQSAVIAGLIRFPEEIERHSEALTRLARLDPDAAPAIESLIELSETLDSQAPSAISD 520

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           R          +       D             + R+   +A++L  +   L        
Sbjct: 521 R----------QGHPAPPEDQRFAFLRKGTPPGEAREELAEAVSLLAQKPALEAAMAATI 570

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            +  +   +G   + A L   L  V  ++  
Sbjct: 571 ARFDE-DPEGSFAEQARLREQLTTVEERLKA 600


>gi|225570456|ref|ZP_03779481.1| hypothetical protein CLOHYLEM_06557 [Clostridium hylemonae DSM
           15053]
 gi|225160653|gb|EEG73272.1| hypothetical protein CLOHYLEM_06557 [Clostridium hylemonae DSM
           15053]
          Length = 589

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 153/633 (24%), Positives = 269/633 (42%), Gaps = 51/633 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  D I+++     I ++I  YV   ++ +      Y+  CPFH+EK+PSF  +  K 
Sbjct: 1   MYYSDDLIEEVRAKNDIVDVISGYVKLQKKGS-----SYFGLCPFHNEKSPSFSVSRQKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLI 118
            YYCF C   G+  +F+      +F+E+++ LA  AGV LP  D   E ++K   ++ L+
Sbjct: 56  MYYCFGCGAGGNVFTFIMEYENYTFLEALRYLAERAGVELPEQDESEESRKKAGVRSTLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A  F++  LK+ R +    YL +R +    I  F LGY+  S   L  +L+ KG+
Sbjct: 116 EINKLAAQFYYAQLKDPRGEHALSYLKQRELSDETIRAFGLGYSGKSGKELYRYLKSKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S++ + +AGL I  +  +  YD+F NR++FPI  +  +VI FGGR +      KYLNSPE
Sbjct: 176 SDDILFKAGL-IAFNEKSGPYDKFWNRVMFPIMDANSKVIGFGGRVM-GDGQPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K +NLY    A                  + +L EGYMDV+SL QAG  N V+SL
Sbjct: 234 TMIFDKSRNLYGLNRAR------------TFRKPYFLLCEGYMDVISLHQAGFGNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     L+ +    + L +D D+ G +AA +A  +       G     + +   +D
Sbjct: 282 GTALTSGHASLIRRYVEEVYLTYDSDEAGTKAALRAAPI---LKEAGITARVIRMEPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AFE+ I ++        +   +     TP+ + E        +    ++
Sbjct: 339 PDEFIKNMGAEAFEERIGKARNGFMFGLEVLEKQYDMKTPEGKTEFMREAATRLTEFDEE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+       ++                      K  S R  ++ +VK     
Sbjct: 399 IERNNYIEAVAGAYHVGYEDLRKLVGRMAVQKGLAKPVVRAKTASGREKENGIVKS---- 454

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LL  LI    I ++  + +    +     + +   L+  + E     P ++ 
Sbjct: 455 -----QKILLTWLIEEETIFRQIEKYIKPSDFTGELYRTVAQLLYEQY-EAGEVNPAKLM 508

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               +      +  L          +   E +    ++   +   +  +   +      +
Sbjct: 509 NHFTDEEEHREVAGLFH--------TKIKELSTAAEQEKALKETVMRVKSHSIEEATHNL 560

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           E          + +    L+     +   + ++
Sbjct: 561 E--------PADIQGLQRLMEDKRALQ-DLEKL 584


>gi|37527833|ref|NP_931178.1| DNA primase [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36787269|emb|CAE16350.1| DNA primase [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 581

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 165/635 (25%), Positives = 289/635 (45%), Gaps = 67/635 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRAFINDLLARTDIIDLIDVRVPLKKQGKN-----HHACCPFHNEKTPSFTVNGDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LAA+ G+ +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVESIEELAAMHGLEVPYEAGSSHSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+ + L     ++   YL +RG+    I  F +G+AP    +  +        
Sbjct: 119 LMDKLNSFYQNVLNTPAAQQARQYLAQRGLSEEIIHRFSIGFAPAGWDNTLKRFAHNEED 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
             ++ +AG+L+  +++  +YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RRQLNDAGMLV-ANDNGRTYDRFRERIMFPIRDRRGRVIAFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A        R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEAQQNHSDLSR----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTSEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS +R  G+ AFE+ + +S  L + L++        + P+ + +L       IN I  + 
Sbjct: 347 DSLVRKEGRKAFEQRMEQSHTLSEFLFESLLPQVDLSNPEGKTKLSSLSVPLINQIPGEV 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + + +       +            N +    K  +                
Sbjct: 407 LRLYMRQELGNMMGIPDAVQLERLLPQHLESGNNYQMPQLKPTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ-------YQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
                  L+  L+ +P +             ++A +         L+  L    + Q   
Sbjct: 452 -----RILIGLLVQNPHLAALVPPLQGIMQAKIAGLP--------LFMELVEVCLTQPGL 498

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              ++ ++  +  F + L++L              +  + ++ +   +    +     L 
Sbjct: 499 TTGQLLEQYRDNKFSKQLEKLATW----------NDIQVEEIAENTFRDALDHLVDSALE 548

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            + + +   IA+   +G   +    + +++E   +
Sbjct: 549 ERLDIL---IARARTEGLTPEEREEVRLINESRAR 580


>gi|317473636|ref|ZP_07932925.1| DNA primase [Anaerostipes sp. 3_2_56FAA]
 gi|316898926|gb|EFV20951.1| DNA primase [Anaerostipes sp. 3_2_56FAA]
          Length = 585

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 160/608 (26%), Positives = 278/608 (45%), Gaps = 33/608 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  D I+++     I +LI  YV   R+ +      Y+  CPFH+EK+PSF  +  K 
Sbjct: 1   MLYGDDIIEEVRSRNDIVDLISSYVPLKRKGS-----SYFGLCPFHNEKSPSFSVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118
            YYCF C   G+  +F+      +F E+V+ LA  AG+ LP      + +++   +  L 
Sbjct: 56  MYYCFGCGAGGNVFTFIMEYENFTFPEAVRYLAERAGMELPEQELSAEAKQQADAKVQLK 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A ++F+  L + R ++   YL +RGI    I+ F LGYA   +  L   L+ KGF
Sbjct: 116 EMNKMAANYFYILLHSKRGEKGLAYLTKRGITGETIKKFGLGYADIYQDDLYRFLKSKGF 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S+E++ ++ L+   +    S D+F NR++FPI+    +VI FGGR +    S KYLNS E
Sbjct: 176 SDEELKDSALVTIDEARGGS-DKFWNRVMFPIQDVNSRVIGFGGRVM-GDGSPKYLNSRE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF K +NLY    A +                FIIL EGYMDV+S+ QAG  N V++L
Sbjct: 234 TKLFDKSRNLYGLNFARSS------------REKFIILCEGYMDVISMHQAGFTNAVAAL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA TE    LL + +  ++L FD D+ G RA  +AI +       G  V  + L+  +D
Sbjct: 282 GTAFTEGHGMLLKRYTNEVILSFDSDEAGQRAILRAIPI---LKGAGLTVRVLDLTPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G    +  I ++               + + P+E+ + +      ++ I++ 
Sbjct: 339 PDEFIKELGSEELKNRIQKARSSFMFQISVAAGKYNQDDPEEKTKFQHEAAKLLSGIREP 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+        ++       YG           Q+ P ++  + + VK +  +
Sbjct: 399 LERNNYCEAVSREYFMGVKELKDLVEYYG------TSGYVQEKPKEQERRPAEVKKEEKR 452

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +    +  LL  L+N P + Q+    +    +           LF ++      +P +I 
Sbjct: 453 QEP--QKLLLTWLVNEPVLFQKLAGIIGPDDFIEPIYHGAAMLLFEEYERDGKVMPAKIL 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK-EE 597
            +  +    + + +L              +  + D+ +  ++    +K        K +E
Sbjct: 511 NQYTDMEDQKKIAELFNTTLKLKPLPEDNDKALTDIVRKVKEDSIEHKMNESNDIMKWQE 570

Query: 598 IEKQIAQV 605
           + ++  ++
Sbjct: 571 LIQEKGRL 578


>gi|219871371|ref|YP_002475746.1| DNA primase [Haemophilus parasuis SH0165]
 gi|219691575|gb|ACL32798.1| DNA primase [Haemophilus parasuis SH0165]
          Length = 582

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 178/625 (28%), Positives = 292/625 (46%), Gaps = 54/625 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DL+    I  LI   V   +        DY ACCPFH EK+PSF  + SK F
Sbjct: 4   SIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQSKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C V G+ +SFL       F E+++ LAA+ G+ +P       D K +   K + +
Sbjct: 59  YHCFGCGVHGNVISFLMEYDKLEFPEAIEELAALHGLEVPRENVINRDGKPQASYKTRRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L+++   F+   L      +   YL +RG+    I+ F++G++P++  ++       
Sbjct: 119 LYELLDLVAKFYQQQLTQDSASQA--YLQQRGLSQEIIDRFEIGFSPNAMDAVLRRFGNN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
               +K+++ G+L   D     YDRFRNR++FPIR  RG+VIAFGGR L   E  KYLNS
Sbjct: 177 PEEVQKLLDTGMLSKNDRG-NVYDRFRNRVMFPIRDKRGRVIAFGGRVL-GDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+  +HKG  LY  + AL +            +  F+ +VEGYMDV++L Q GV N V+
Sbjct: 235 PESATYHKGNELYGLYQALQH----------NENPDFLFVVEGYMDVVALAQFGVNNAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGTA T  Q++L+++ + +++ C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTATTGEQIQLMFRSTEQVICCYDGDRAGRDAAWRALENALPYLHDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD+FIR  GK  FE+ + ++L L + L+         +T + +++L       I  I 
Sbjct: 345 EDPDTFIRSQGKEGFERYLEQALTLSEFLFDSLLTQVDLSTKEGKSKLASLALPLIKRIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR Y    +  +L  L    +              RH         +          
Sbjct: 405 GEMLRLYLRNILGQKLGILDPTQLEVMLPQKSVETAPKRHNMPHIERTPM---------- 454

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     L+  L+ +P ++Q   +++  ++    +   L+  L +            
Sbjct: 455 --------RLLIALLLQNPHLVQNVPEDVTFLQSLQEKGFDLFLELVNICHANLGISMGG 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + + L E      L+ L                +  +V   +   L  + + +LL RQ E
Sbjct: 507 VLEHLRESPNYRHLELLANWDHLV---------SSENVENTFIDTLDFFYK-KLLDRQIE 556

Query: 597 EIEKQIAQVTAKGEAEKTAILISIL 621
            +  +    T     ++   L+ +L
Sbjct: 557 ILMAK--DRTTGLNQQEKQELMMLL 579


>gi|121638231|ref|YP_978455.1| DNA primase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224990725|ref|YP_002645412.1| putative DNA primase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|121493879|emb|CAL72354.1| Probable dna primase dnaG [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224773838|dbj|BAH26644.1| putative DNA primase [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 639

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 142/653 (21%), Positives = 251/653 (38%), Gaps = 45/653 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I +++G YV   R             CPFH+EK+PSFH   + G 
Sbjct: 4   RISDRDIAAIREGARIEDVVGDYVQLRRAGA----DSLKGLCPFHNEKSPSFHVRPNHGH 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD  +F+  +   SF+E+V+ LA   G  +         +     ++ L+ 
Sbjct: 60  FHCFGCGEGGDVYAFIQKIEHVSFVEAVELLADRIGHTISYTGAATSVQRDRGSRSRLLA 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A  F+  +L++        YL ER  D+ A   F  G+AP    SL +HL++KGF 
Sbjct: 120 ANAAAAAFYAQALQSDEAAPARQYLTERSFDAAAARKFGCGFAPSGWDSLTKHLQRKGFE 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            E++  AGL           DRF  RL++PIR+S G+V+ FG R L   +++  KY+N+P
Sbjct: 180 FEELEAAGLSRQ--GRHGPMDRFHRRLLWPIRTSAGEVVGFGARRLFDDDAMEAKYVNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K   ++    A   + K              ++VEGY DV+++  AGV   V+S
Sbjct: 238 ETLLYKKSSVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVAS 287

Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA     L +L +L          ++  FDGD+ G  AA KA D          +   
Sbjct: 288 CGTAFGGEHLAMLRRLMMDDSFFRGELIYVFDGDEAGRAAALKAFD---GEQKLAGQSFV 344

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G  A   L+    PL +   +        ++ + R         
Sbjct: 345 AVAPDGMDPCDLRLKCGDAALRDLVARRTPLFEFAIRAAIAEMDLDSAEGRVAALRRCVP 404

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR---------HRDQKG 461
            +  IKD  LR  Y++ +   +       +           K+ R          R  + 
Sbjct: 405 MVGQIKDPTLRDEYARQLAGWVGWADVAQVIGRVRGEAKRTKHPRLGRLGSTTIARAAQR 464

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
           P+        V+          +   L + + +PA+    +  L    + + E   + + 
Sbjct: 465 PTAGPPTELAVRPDPRDPTLWPQREALKSALQYPALAGPVFDALTVEGFTHPEYAAVRAA 524

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           + +           +    + ++    +   L  ++    +          D    Y   
Sbjct: 525 IDTAGGTSAGLSGAQWLDMVRQQTTSTVTSALISELGVEAIQV------DDDKLPRYIAG 578

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +    +   L RQ  E++ ++ +++   + ++   L   L  +      +  Q
Sbjct: 579 VLARLQEVWLRRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 631


>gi|325920513|ref|ZP_08182438.1| DNA primase [Xanthomonas gardneri ATCC 19865]
 gi|325548996|gb|EGD19925.1| DNA primase [Xanthomonas gardneri ATCC 19865]
          Length = 584

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 169/636 (26%), Positives = 273/636 (42%), Gaps = 60/636 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    I  ++G  V   R+       +Y A CPFHDE++ SF  + +K F
Sbjct: 3   RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120
           Y+CF C   G  +SFL       F+++V  LA  AG+ +P    +   +++    +L   
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEIPRETQQRTPQQQDDSRELYSA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E AT FF   L+ +  +R   YLD RG+D+     F++GYAPD   +L++ L       
Sbjct: 118 LEAATQFFQRQLEGS--ERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235
             +  AGL    D     YD+FR+R++FPI   RG+VIAFGGR +      +    KYLN
Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LFHKG+ LY  +      QK  R          +I+VEGYMDV+SL Q GV   V
Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T     LL++ +P +  CFDGD+ G +A ++A++ VL  +  G +  F+ L  
Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPD+ +R  G  AF++ + ++ PL    +   +   + +T D +A L    K  +  I
Sbjct: 345 GEDPDTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERAKPMLAQI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +        Q +               +  GR           +  S            
Sbjct: 405 PEGAFGDLMRQELSRLTGVGASTSTQTSTPQGRPRPPARMGAPTQKRSLVRAS------- 457

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                       +  L+  P++      +          +  L   L +   ++      
Sbjct: 458 ------------IAILLQQPSLAMSLEGDHDFSGLRLPGIDLLME-LLALVRQRPEISTG 504

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + +   ER     L++L  QV                        +      +LL ++ 
Sbjct: 505 ALLEHFAEREEQAALQKLAAQVLPGD----------EHSWAMELHDVVAQLDKQLLRQRL 554

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +E++ +  +     + +K       L E+   +  +
Sbjct: 555 DELQDK-QRAQGLDDTDKY-----ELRELFKALAAL 584


>gi|29832219|ref|NP_826853.1| DNA primase [Streptomyces avermitilis MA-4680]
 gi|29609337|dbj|BAC73388.1| putative DNA primase [Streptomyces avermitilis MA-4680]
          Length = 632

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 151/652 (23%), Positives = 272/652 (41%), Gaps = 43/652 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  + SKG 
Sbjct: 4   RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD ++F+  +   +F E V+RLAA AG+ L   +       +   +  L+ 
Sbjct: 60  FHCFGCQEGGDTITFVMKVDHLTFSEVVERLAAQAGITLRYEEGGYNPSHQRGERIRLVE 119

Query: 120 LIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             ++A  F+   L   +       +L ERG D  A   F +GY+P     L  +LR KGF
Sbjct: 120 AHKIAAQFYIEQLDTGSEADTGRKFLAERGFDQAAAAHFGVGYSPQGWDHLTRYLRGKGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           ++++++ +GL    +      DRFR RL++PIR   G V+ FG R L + ++  KYLN+P
Sbjct: 180 TDKELLLSGL--SQEGRRGPIDRFRGRLMWPIRDIGGDVVGFGARKLYESDNGPKYLNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T ++ K + LY    A   + K  R           ++VEGY DV++   AGV   +++
Sbjct: 238 DTAIYRKSQVLYGIDLAKKDIAKVSRA----------VVVEGYTDVMACHLAGVTTAIAT 287

Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            GTA     +++L +L       R++  FDGD  G +AA +A +               +
Sbjct: 288 CGTAFGTDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP       G  A   L+    PL +   ++        TP  RA         +
Sbjct: 345 APDGMDPCELRLAKGDEAVADLVEPRTPLFEFALRQIVARYDLETPAGRAAALDESAPIV 404

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL- 471
             IK+   ++  +  +   L  L  +++ +       W ++   +      QR  QS   
Sbjct: 405 ARIKNSGAQHEVAVQLAGMLGILDTQFVVKRVSQLARWARDRGGKGPAPAQQRPQQSYAA 464

Query: 472 ------VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                     L       E  LL   +  P ++   +       +   +   +   +   
Sbjct: 465 VQVPSGPALHLRNPVYATERELLKLALQRPELVSPAFDAYGIDEFTAPQYAAVREAIIEA 524

Query: 526 -FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
              E     P+E   R+ E    + ++ +  ++    +   T +       + Y     +
Sbjct: 525 GGAEYGVQDPQEYLVRVREVAPDDTVRAMVTELAVEAIMRRTVD-------EAYAGDQLV 577

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             R R + R+  E++  +A+++A G+  + A + + L  +      +  + A
Sbjct: 578 TVRRRAVERRVREVQGSLARLSAGGDPAQLAAVQNELWVLQQYDQALRERGA 629


>gi|331269993|ref|YP_004396485.1| DNA primase [Clostridium botulinum BKT015925]
 gi|329126543|gb|AEB76488.1| DNA primase [Clostridium botulinum BKT015925]
          Length = 596

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 164/633 (25%), Positives = 282/633 (44%), Gaps = 40/633 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I+ +     I ++I + V   R   N     +   CPFH+EKTPSF  ++ K  Y
Sbjct: 2   ISEEIIEKIKEQNNIVDVISESVKLKRTGRN-----FIGLCPFHNEKTPSFSVSEDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+  +F+      SFIE+V+ L     + +   D K +  +     L ++  
Sbjct: 57  KCFGCGEAGNVFTFVMKSRNLSFIEAVKYLGDKVNIHIEENDEKNKIHKNKNDKLYKINV 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  ++  +L+ +  K    Y ++RGI +  +  F LGYAP   +++   L++KG++E  
Sbjct: 117 EAARYYFRNLQTS--KEATDYFEKRGILNKTLRRFGLGYAPSGWHNIMNFLKKKGYTELD 174

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++ AGL+I G  + + YDRFRNR+IFP+   +G+VI FGGR L      KYLNSPET +F
Sbjct: 175 LLNAGLIIKG-KNNSLYDRFRNRVIFPVFDYKGKVIGFGGRVL-DDSKPKYLNSPETDIF 232

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG NLY    A+    +             II+VEGYMD +SL Q GV NVV+SLGTAL
Sbjct: 233 KKGTNLYGLNFAIKDNNR------------TIIIVEGYMDCISLYQYGVTNVVASLGTAL 280

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q +LL + + +I++ +D D  G  A  + + +       G  +  + +  G+DPD F
Sbjct: 281 TYDQAKLLKRYADKIIVSYDADFAGQNATMRGLKI---LKKQGFDLKVLDIPDGKDPDEF 337

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I+ +GK AF KLI ++LPLVD   K           +   +   +    IN + +   + 
Sbjct: 338 IKNHGKDAFMKLIDDALPLVDYEIKMAKYGLDITNEEMLMKYVNNACKIINKL-NPIEKD 396

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + +    +   Q      +         ++ R  K    +       K  +      
Sbjct: 397 IYIRKLSQETRLKEQAIYDLLNANTSKNYPKSQQRYTKENFGQ-------KLYIEPAYMK 449

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            +  L+  +  +          +++  +  +  +K++  +  +  +      + + +   
Sbjct: 450 TQRNLIKIMTLNIDNYGYVIDTVSEKDFIIDSHKKIFKLIKEEVSQN----IDNLKKIYK 505

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                       R+           + +  ++   Y + +  +K    L   KEEI K+I
Sbjct: 506 SIEMKCDDVGSSREWIKIQQVQLDDDVDCKELVDAYIKEIKKFK----LEESKEEIMKKI 561

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
               A+G  E++  L+  L  +   I  + + E
Sbjct: 562 KYYEAQGLFEESLNLVKELESIQNNIMAMNNCE 594


>gi|317132027|ref|YP_004091341.1| DNA primase [Ethanoligenens harbinense YUAN-3]
 gi|315470006|gb|ADU26610.1| DNA primase [Ethanoligenens harbinense YUAN-3]
          Length = 583

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 152/605 (25%), Positives = 270/605 (44%), Gaps = 30/605 (4%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
               F++++     I +++ +YV+  +             CPFH EKTPSFH       +
Sbjct: 2   ISEAFLQEMKDRCDIESVVSRYVNLRKSGK-----SMVGLCPFHSEKTPSFHVYPDDQHF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           YCF C   GD ++F+  +    + E+V+ LAA AG+ +P   P  +   + +  ++ +  
Sbjct: 57  YCFGCETGGDVITFIRKIENLEYREAVEFLAAQAGLTVPDDAPGAQAASRERARILEMNR 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  FFH  L + + K    Y ++RG+  H I  F LGYAPD    L  +L+Q+GF   +
Sbjct: 117 AAARFFHECLISPQGKEGLAYFEQRGLSMHTIRSFGLGYAPDGWNHLLGYLQQQGF-RPE 175

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
            + AG L     +   YD FR+R++FPI   RG V+AFGGR L      KYLNS +T  F
Sbjct: 176 ELAAGALALRGRNGGYYDAFRHRVMFPIIDLRGNVVAFGGRVL-DDSKPKYLNSNDTPAF 234

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           HK K L+    A N                 +IL EGYMD ++L QAG +N V++LGTAL
Sbjct: 235 HKSKCLFALNFAKNS------------GGRSLILCEGYMDAIALHQAGFRNAVATLGTAL 282

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q+RL+ + +  +V+ +D D  G  A+ +AI L       G  V  + +  G+DPD F
Sbjct: 283 TPEQVRLMARYAKEVVISYDADKAGQNASQRAIGL---LTQAGLAVRVLRIEGGKDPDEF 339

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           IR +G   F  L+  S   ++       +  + +  +++A         +  ++    R 
Sbjct: 340 IRTHGADRFRMLLEHSGNHIEYRLASALQKYNVDITEQKAAYLKEAVEILATVESMVERD 399

Query: 423 YYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            Y+  + + L    +  + +        +  +K AR R++   +  +      + + +  
Sbjct: 400 VYAGKLAETLGVSKENVLADAAALRAKRQGREKKARVREEIAAAHGMKDRVNPEKRANLL 459

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +  E  L++ L  +P  L+     +    +     +++++ L    +         +  
Sbjct: 460 AARAEENLIVLLYRNPDFLKRMDNLIRPEDFVTAFNRRVYTALREQAIAGGEPDLSALGA 519

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRLLSRQKE 596
           +      G++   L + +    L  A   A +     V +   +       +  +  + +
Sbjct: 520 QFSADEMGKITGLLHKTLVSDTLQEAHDCAAVLLKEQVNRRAAEQQDAQAAYDAI--RVK 577

Query: 597 EIEKQ 601
           ++E+Q
Sbjct: 578 KLEEQ 582


>gi|160937107|ref|ZP_02084470.1| hypothetical protein CLOBOL_01997 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440008|gb|EDP17756.1| hypothetical protein CLOBOL_01997 [Clostridium bolteae ATCC
           BAA-613]
          Length = 608

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 145/631 (22%), Positives = 264/631 (41%), Gaps = 44/631 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP + I+++ +   I ++I  YV   ++  N     Y+  CPFH+EK+PSF  +  K 
Sbjct: 1   MYYPDEVIEEVRMKNDIVDVISGYVKLQKKGAN-----YFGLCPFHNEKSPSFSVSPGKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+ ++FL      +F E++  LA  AGV LP      +  ++  ++  L+
Sbjct: 56  MYYCFGCGAGGNVITFLMEYENYTFQEALSSLADRAGVNLPKMEYSREAREQADLRARLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLD-ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            + ++A ++F++ +K  + K  + Y   +RG+    I  F LGY+  +   L  +L+ KG
Sbjct: 116 EVNKLAANYFYYQMKQPQGKAAYDYFHLKRGLADETIVHFGLGYSNKTSDDLYRYLKGKG 175

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           + +  + + GL+   +      D+F NR++FPI     +VI FGGR +      KYLNSP
Sbjct: 176 YEDSFLKDTGLVTLEERGGR--DKFWNRVMFPIMDVNNRVIGFGGRVM-GDGEPKYLNSP 232

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LF K +NLY    A              +   ++++ EGY+DV+SL QAG  N V+S
Sbjct: 233 ETKLFDKSRNLYGLNYAR------------LSREGYLLICEGYLDVISLHQAGFTNAVAS 280

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA T     +L + + +++L +D D  G++AA +AI +       G  +  + +   +
Sbjct: 281 LGTAFTSQHANVLKRYTDQVILTYDSDGAGVKAALRAIPI---LKEVGMSIKVLNMKPYK 337

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD FI+  G  AF + I E+                 + P+++          +    +
Sbjct: 338 DPDEFIKNMGAEAFRQRIREAKNSFLFEVDVLRRGYEMDDPEQKTRFYQETARKLLQFGE 397

Query: 418 QKLRYYYSQAIR--------------DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
              R  Y QA+               +R+         E   +           ++ G S
Sbjct: 398 ALERENYLQAVAREQMIPAEELRGLVNRMGMSMGLKAGESLNHSGRVVPQETQEEESGGS 457

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                    +          +  LL  LI  PA+ ++    +    +  N   ++   +F
Sbjct: 458 GLSGSRKPRRPDKEDGIRRSQRLLLTWLIETPALFEKIEGIITADDFVENLYHQVAQMVF 517

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD----VRQGYQ 579
               E        + + + +    + +  L        L +   +    +    VR+   
Sbjct: 518 DGHREGNLNPAAILSRFINDEDQYKEVAALFNASLKESLNNEEQKKAFSETVMKVRKNSL 577

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
              +   +     ++    +  + Q+    +
Sbjct: 578 DVASRNAKDITQLQEIIRQQAALKQLHISLD 608


>gi|313892964|ref|ZP_07826541.1| DNA primase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442317|gb|EFR60732.1| DNA primase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 590

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 175/631 (27%), Positives = 276/631 (43%), Gaps = 51/631 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           +  + I+ +     I ++I ++V   +R  N     YW CCPFH+EKTPSF     KGFY
Sbjct: 5   FENELIEQIKDANDIVSVISEHVALKKRGKN-----YWGCCPFHNEKTPSFSVAPEKGFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           YCF CH  G+ + FL  L   +F+E ++RLA  A +PLP     P+   +++ +  L   
Sbjct: 60  YCFGCHASGNVIKFLMELEHLTFVEVLERLANRANIPLPEAKLSPEQRARDERRKKLYEA 119

Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            ++A  FFH+ L + +  K    YL +RG+    IE FKLG+APD    L     ++G  
Sbjct: 120 CDLAATFFHNCLTQTSMGKVGLDYLKKRGLTKETIEQFKLGFAPDGWDKLYRAFHERGID 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  ++E  L+         YD FRNR++FPI   +G+V+AFGGR +    + KYLNSPE+
Sbjct: 180 DSILLELNLVRKNQKG-QFYDFFRNRIMFPIMDGKGRVVAFGGRVM-DDSTPKYLNSPES 237

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGK L+ F  A   ++               ILVEGYMDV+S    GV NVV+SLG
Sbjct: 238 SIFEKGKILFAFDKAYKSIR----------QERQAILVEGYMDVISAHNHGVTNVVASLG 287

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T     +L + +  IVL +D D  G +AA +AI+L         +V  + +  G+DP
Sbjct: 288 TAYTRDHGHILMRQADEIVLAYDMDGAGRQAAARAIEL---LQNTDFKVRVLAMPDGKDP 344

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D ++R +G  AF+ L+ +++  +D L          N  + +  +   +   I +I  Q 
Sbjct: 345 DDYVRNHGGQAFKDLVAKAMKPLDYLLSESLIKHDTNDTEGKQAVMADVFPYIANIDSQT 404

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    + +   L             Y R + K  +       S  L    L KG   K 
Sbjct: 405 QRDDALKTLALPLWLDNSSIFR----YFRDYVKKGQIELVDTASAPLPTQDLPKGDAEK- 459

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  LL        IL      L    +  +E + +   +FS +  + +     I  
Sbjct: 460 -------LLSLAFTDGEILSHMMSYLPIEDFQKSEYRCIIEKIFSLYKTEGHLDETAIQS 512

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L    +               ++S     +  + +      +    R   L  Q +   
Sbjct: 513 VLTPSEYD--------------IYSRLVVMSDDEYKVQVPGLIR-KIRLHSLREQYKAHS 557

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               Q+   G++   + L     E+   I +
Sbjct: 558 IMADQLKRAGDSTFISEL-HKCQEIQNLIRE 587


>gi|308069923|ref|YP_003871528.1| DNA primase [Paenibacillus polymyxa E681]
 gi|305859202|gb|ADM70990.1| DNA primase [Paenibacillus polymyxa E681]
          Length = 623

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 164/632 (25%), Positives = 282/632 (44%), Gaps = 39/632 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           N P D I+ +L H  I + + +YV   ++            CPFH EKTPSF     +  
Sbjct: 25  NIPDDIIESVLQHHDIVDTVSKYVHLTKQGK-----YMKGLCPFHSEKTPSFTVTPDRQI 79

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIRL 120
           +YC+ C   G+ + F+  + G SF E+V+ +A  + +PL     +    +  +   L++ 
Sbjct: 80  FYCYGCGAGGNAIKFMMEIEGLSFPEAVRTMAEESHIPLGEWQGRDSSHQHPELNRLLQA 139

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E+ +  +H  LKN    K    YL  RG     I+ F++GYAP+   ++ + L ++ F 
Sbjct: 140 YELTSKMYHFLLKNTEHGKPAMEYLRSRGFSDKIIDQFQIGYAPNRWDTIVQFLEKRSFD 199

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
             ++ + GL+          DRFR+R++FPI +  G+VIAF GR L +G+  KYLNSPET
Sbjct: 200 PVEMEKGGLISPRHEGDGYVDRFRDRIMFPIWNRNGKVIAFAGRILGEGQP-KYLNSPET 258

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LF+K + LYN   A   ++K              +L EGY DV+S  +AGVQN V+++G
Sbjct: 259 KLFNKSRTLYNLHHAKTSIRKL----------RQSVLFEGYGDVISAWEAGVQNGVAAMG 308

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE+   +L  L   +++C+DGD  G  AA K   L       G  V   L+S G DP
Sbjct: 309 TALTEHHATMLKGLCDEVIICYDGDRAGQAAALKNFPL---LENAGLHVKVALVSDGMDP 365

Query: 360 DSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D FIR YG   F+ ++I  ++  V        +N      + R        N I  +   
Sbjct: 366 DDFIRQYGGERFQRQIIESAVSTVKFKLIYLKKNHILQEEEGRIAYSREALNVIAPLSSP 425

Query: 419 KLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
             R  Y + +   ++  F+    E        +  +    + +    + R  +  +VK  
Sbjct: 426 TEREVYLREVSAEVKVDFETLKQECNLLRQSLQKKQNFGDNNENGWNNGRHKKGQIVKPN 485

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           +     + E  LL  ++      Q   + L D  ++  +   + ++L++ + + K     
Sbjct: 486 VMPAYHVAERRLLHWMMQDVETAQYVEKHLGD-AFNIEDHAAIAAYLYAYYAQGKLPDTS 544

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                L +        +L++ V    +  A  + +   +    QQ      R   L +Q 
Sbjct: 545 RFISSLQD-------DRLEKNVSSIMMMDA-PDVSPHVLDDCIQQV-----RKFSLEKQL 591

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +   +++      G+A + A ++  +  +  Q
Sbjct: 592 DLKREEMRAAERSGDALRAAQIVIEIIALERQ 623


>gi|294793988|ref|ZP_06759125.1| DNA primase [Veillonella sp. 3_1_44]
 gi|294455558|gb|EFG23930.1| DNA primase [Veillonella sp. 3_1_44]
          Length = 597

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 175/631 (27%), Positives = 278/631 (44%), Gaps = 51/631 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           +  + I+ +     I +++ ++V   +R  N     YW CCPFH+EKTPSF     KGFY
Sbjct: 12  FENELIEQIKDANDIVSVVSEHVALKKRGKN-----YWGCCPFHNEKTPSFSVAPEKGFY 66

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           YCF CH  G+ + FL  L   +F+E+++RLA  A +PLP     P+   +++ +  L   
Sbjct: 67  YCFGCHASGNAIKFLMELEHLTFVEALERLANRANIPLPEAKLSPEQRARDERRKKLYEA 126

Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            ++A  FFH+ L + +  K    YL +RG+    IE FKLG+APD    L      +G  
Sbjct: 127 SDLAATFFHNCLTQTSIGKVGLDYLKKRGLTQATIETFKLGFAPDGWDKLYRAFHDRGID 186

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  ++E  L+         YD FRNR++FPI   +G+V+AFGGR +    + KYLNSPE+
Sbjct: 187 DSILLELNLVRKNQKG-QFYDFFRNRIMFPIMDGKGRVVAFGGRVM-DDSTPKYLNSPES 244

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGK L+ F  A   ++               ILVEGYMDV+S    GV NVV+SLG
Sbjct: 245 SIFEKGKLLFAFDKAYKSIR----------EEKQAILVEGYMDVISAHNHGVTNVVASLG 294

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T     +L + +  IVL +D D  G +AA +AI+L         +V  + +  G+DP
Sbjct: 295 TAYTRDHGHILMRQAEEIVLAYDMDGAGRQAAARAIEL---LQNTDFKVRVLAMPDGKDP 351

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D ++R +G  AF++L+ +++  +D L          N  + +  +   +   I +I  Q 
Sbjct: 352 DDYVRNHGGQAFKELVAKAVKPLDYLLSESLIKHDTNDTEGKQAVMADVFPYIANIDSQT 411

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    + +   L             Y R + K  +       S  L    L +G   K 
Sbjct: 412 QRDDALKTLALPLWLDNSTIFR----YFRDYVKKGQIELVDTASTPLPTQDLPRGDAEK- 466

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  LL     +  +LQ     L    ++  E + +   LF+ +  +       I  
Sbjct: 467 -------LLSLAFTNGEVLQHMMSYLPLEDFEKIEYRGIIEKLFTLYKSEGRLDETAIQS 519

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L  + +    + +                   D  +    AL    R   L  Q +   
Sbjct: 520 VLSSQEYDIYSRLVVMS---------------DDEYKVQVPALIRKIRLHSLREQYKAHS 564

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               Q+   G++   + L     E+   I +
Sbjct: 565 IMADQLKRAGDSTFISEL-HKCQEIQNLIRE 594


>gi|312196070|ref|YP_004016131.1| DNA primase [Frankia sp. EuI1c]
 gi|311227406|gb|ADP80261.1| DNA primase [Frankia sp. EuI1c]
          Length = 643

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 150/654 (22%), Positives = 256/654 (39%), Gaps = 44/654 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I  +     I ++IG++V           G+    CPFH+EKTPSF+   S G Y
Sbjct: 5   IRDADIALVRERARIEDVIGEHVQLRPAG----GGNLRGLCPFHEEKTPSFNVKPSTGVY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
           YCF C   GD + F+ A+ G SF E+++RLA  AGV L         +     +  L+  
Sbjct: 61  YCFGCQQGGDVIGFVRAIDGLSFPEAIERLARKAGVTLTYEGGGTTNRSVTSQRQRLLDA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A  F+   L  A  +    +L  RG D+     F +GYAP     L  HL  + F+ 
Sbjct: 121 HRAAAQFYAEHLSTAPARAGWDFLAARGFDAEVAGHFGVGYAPQGWDELSRHLLARRFTA 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES---VKYLNSP 237
           E+++  GL   G       DRFR+RL++PIR   G V+ FGGR L+  +     KYLNSP
Sbjct: 181 EELVLGGLAKQGTRG-GLVDRFRHRLLWPIRDLSGDVVGFGGRRLAADDEKAGPKYLNSP 239

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LF K   LY    A   + +             +++VEGY DV++   AGV   V++
Sbjct: 240 ETPLFKKASLLYGADLARREIARRY----------QVVVVEGYTDVMACHVAGVTTAVAT 289

Query: 298 LGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA     + ++ +           ++  FDGD  G +AA +A +     +    +   
Sbjct: 290 CGTAFGSDHVGVIRRLLWDSDAQRGEVIFTFDGDAAGQKAAMRAFEHEERFVT---QTFV 346

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            + + G DP       G  A  +L+   +PL++   +        N+ + R         
Sbjct: 347 AVETTGLDPCDLRLARGDAAVRELVAARVPLLEFALRGVVTRHDLNSVEGRIAALDAAAP 406

Query: 411 CINHIKDQKLRYYYSQAIRDR---------LQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
            +N IKD  LR  Y+  +            L+++F+         GR   ++A      G
Sbjct: 407 IVNQIKDWSLRQRYAVQLDRWTGFNDEAFVLRRVFEHPSAPAPETGRRPGRDAAGTAAGG 466

Query: 462 PSQRLMQSSLVKGKLSKKPS-LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           P+          G      + + E   L   + HP +    + +L    +   + + +  
Sbjct: 467 PAAPRAGGRAPAGAAPDDAAVIVERETLKIALQHPGLAGPMFDQLDPEVFTLADHRAVLG 526

Query: 521 FLFSDFV-EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
            + +            ++   +         + + R V    +     +  + D    Y 
Sbjct: 527 AIAAAGGVSAGLAAAGDVPAWVGRVVTATPHEPVMRLVNALAVEPMLVDHEVDD---RYV 583

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                  R   ++R+  E++ ++ ++    + E        L  +     ++  
Sbjct: 584 GNQIARVRELAVTRRITELKSRVQRLNPVTDPEAFNRDYGELIALEQHKRELRE 637


>gi|237803343|ref|ZP_04590928.1| DNA primase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025324|gb|EGI05380.1| DNA primase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 473

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 157/482 (32%), Positives = 239/482 (49%), Gaps = 20/482 (4%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKSGKN-----YSACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   +   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D+ +R  G  AF+  +   + PL D  +++ T+     + + +A +       I+ +   
Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            LR    Q + +      +               +                    G    
Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPADAPPSYNPYVDYDAMPDFADYQPQGGYEQP 468

Query: 479 KP 480
           + 
Sbjct: 469 QE 470


>gi|34499218|ref|NP_903433.1| DNA primase [Chromobacterium violaceum ATCC 12472]
 gi|34105069|gb|AAQ61425.1| DNA primase [Chromobacterium violaceum ATCC 12472]
          Length = 598

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 172/624 (27%), Positives = 285/624 (45%), Gaps = 39/624 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+DFI  LL  + I +++ +YV   +   N     Y ACCPFH EK+PSF  + SK FY
Sbjct: 2   IPQDFIDQLLSRVDIVDVVDRYVPLKKGGQN-----YMACCPFHKEKSPSFTVSPSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQT-DLI 118
           +CF C   G  + F+    G  F+++V+ LA   G+ +P     +P+  +K + +   L 
Sbjct: 57  HCFGCGAHGSAIGFVMEYQGIGFVDAVKMLAEGIGMQVPNERSVNPEASRKAREKQVSLE 116

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           +L+++A+DF+   LK         Y   RG+       F LGYAPD   +L   +     
Sbjct: 117 QLMQLASDFYRRELKG--AANAVAYCKGRGLSGEIAARFGLGYAPDGWQNLEAAVDNYQD 174

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            +  ++EAGL+I  ++S   YDRFR+RL+FPIR+ RG ++ FGGR L KGE  KYLNSPE
Sbjct: 175 DK--LVEAGLVIVAEDSGRRYDRFRDRLMFPIRNQRGAIVGFGGRVLGKGEP-KYLNSPE 231

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF KG+ LY  +     +++  R          +++VEGYMDV++L Q G+   V++L
Sbjct: 232 TPLFEKGRELYGLYEGRQAIREKNR----------VLVVEGYMDVVALAQYGIGYAVATL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T   +R L K + ++  CFDGD  G +AA++A++  L  L+ G  +NF+ L    D
Sbjct: 282 GTATTGEHVRKLLKHAEQVYFCFDGDAAGQKAAWRALENSLPQLVDGKALNFLFLPTEHD 341

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PDS++R +G  AFE+ L  +SLPL     +      +  TP+ +A+L       +  I  
Sbjct: 342 PDSYVREFGADAFEELLTQQSLPLSVYFTRELCRGINLGTPEGKADLIRQATPLLAQIAA 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             L Y   + + +       +      G  +  ++  R   ++          +V   + 
Sbjct: 402 PALGYMIRKRLAEMAGVDVDELDMLTGGKPQRSERGGRSGGRRDYKVPAESQRVVNTTMV 461

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE--LQKLWSFLFSDFVEQKYFLPE 535
           KK       L+  L+ +P    +       +   +       L   +             
Sbjct: 462 KK-------LIKWLLMNPQWASDVK-LPDSLALSDELGCFAMLAERVLEH---GDAPNTA 510

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-Q 594
           ++ + L    +  L+  + +Q        A    +   + Q     L        L R +
Sbjct: 511 QLIEGLRGTPYEGLIDGVLQQAMQDPDEFADPSDDDRQLFQDGNDRLLKMLHAEQLERLK 570

Query: 595 KEEIEKQIAQVTAKGEAEKTAILI 618
            ++  + +         +    + 
Sbjct: 571 LKDRHEGLTPEEKALMGQLLREMF 594


>gi|300724880|ref|YP_003714205.1| DNA primase [Xenorhabdus nematophila ATCC 19061]
 gi|297631422|emb|CBJ92119.1| DNA biosynthesis; DNA primase [Xenorhabdus nematophila ATCC 19061]
          Length = 582

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 165/595 (27%), Positives = 275/595 (46%), Gaps = 40/595 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N       ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRAFINDLLARTDIIDLIDVRVPLKKKGKNHQ-----ACCPFHNEKTPSFTVNGDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LAAI G+ +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLDFVESIEELAAIHGLEVPYEAGSGGGQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+ HSL     +    YL +RG+     + F +G+AP    ++ +        
Sbjct: 119 LMDKLNSFYQHSLSTPTAQSAQQYLTQRGLSEEITQRFAIGFAPAGWDNVLKRFAHNVED 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            +++ +AG+L+  +++  +YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RKQLNDAGMLV-TNDNGRTYDRFRERVMFPIRDRRGRVIAFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A        R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEAQQNHDTLSR----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA+++++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRTTDSVICCYDGDRAGRDAAWRSLETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS +R  G+ AFE+ + ++L L + L++        +TP+   +L       I+ I  + 
Sbjct: 347 DSLVRKEGQEAFEQRMEKALTLSEFLFESLLPQIDLSTPEGATKLSSLAMPLISQIPGEA 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR+Y  Q I   L       +            +     +  P+                
Sbjct: 407 LRFYLLQEIGRLLGIPDTTQLERSLAKLVKKDTSTYQALKLKPTTM-------------- 452

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +                 L  L+  L    + Q      ++ +
Sbjct: 453 -----RILIALLVQNPHLATLVPSLQGMFSAQIAGL-PLFIELVDTCLAQPGLTTGQLLE 506

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           +  +  + + L++L     D  +     +     +   +  AL     F +   +
Sbjct: 507 QYRDNKYAKQLEKLAAW-NDIQIEEIAEKTFSDALSHLFASALNERFNFLMAKER 560


>gi|118444746|ref|YP_878547.1| DNA primase [Clostridium novyi NT]
 gi|118135202|gb|ABK62246.1| DNA primase [Clostridium novyi NT]
          Length = 597

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 168/633 (26%), Positives = 284/633 (44%), Gaps = 39/633 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I+ +     I ++I + V   R   N     +   CPFH+EKTPSF  +  K  Y
Sbjct: 2   ISEEIIEKIKEQTDIVDVISESVKLKRAGRN-----FLGLCPFHNEKTPSFSVSQDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+  +F+       F+E+V+ L     + +   D K +  +     L ++  
Sbjct: 57  KCFGCGEAGNIFTFVMKTKNLPFVEAVKYLGDKVNIHIEDNDYKNQAYKNKNDKLYKINV 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  ++  +L+   +K+   Y   RGI +  I  F LGYAP   ++L  +L+ KG++E  
Sbjct: 117 EAARYYFKNLQ--INKKATEYFTNRGIVNKTIRRFGLGYAPSGWHNLMNYLKNKGYTELD 174

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++ AGL+I G  + ++YDRFR R+IFP+   RG+VI FGGR L      KYLNSPET +F
Sbjct: 175 LLNAGLIIRG-KNNSTYDRFRERVIFPVFDYRGRVIGFGGRVL-DDSKPKYLNSPETDIF 232

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG NLY    A+   +           S  II+VEGYMD +SL Q G+ NVV+SLGTAL
Sbjct: 233 KKGTNLYGLNFAIKNNK-----------SRTIIIVEGYMDCISLYQHGIDNVVASLGTAL 281

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q +LL +   +I++ +D D  G  A  + + +       G  +  + +  G+DPD F
Sbjct: 282 TYEQGKLLKRYVDKIIISYDADFAGQSATLRGLKI---LKKQGFDLKVLDIPEGKDPDEF 338

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I+ +GK AF KLI ESLPLVD   K        +  +   +   +    IN + +   + 
Sbjct: 339 IKNHGKEAFMKLIDESLPLVDYELKMAKFGLDISNEEMLMKYVNNACEIINKL-NPIEKD 397

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + +        Q      +   R        R  KG   +       K  +      
Sbjct: 398 IYIRKLSQETGLKEQAIYDLLNVKDRKNHIKDEKRYTKGNFGQ-------KLYVEPAYMK 450

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            +  L+  ++ +          + +  +  +  +K++  +       +     +I + + 
Sbjct: 451 TQRKLIKIMMLNIESYDYVMHNIYEEDFIVDSHKKIFKLIKEQVNNNED-NIRDIEKSIE 509

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +       +  R+       + + + +  ++   Y + +  +K    L   KEE+ K+I
Sbjct: 510 TKCDD---VESSREWTKIQQINFSEDIDYKELVNAYIKEIKKFK----LEESKEEVMKKI 562

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
               A+G  E++  L+  L ++   I ++   E
Sbjct: 563 KHYEAQGLFEESLNLVKELEKIQNNIMEMNHCE 595


>gi|269798256|ref|YP_003312156.1| DNA primase [Veillonella parvula DSM 2008]
 gi|269094885|gb|ACZ24876.1| DNA primase [Veillonella parvula DSM 2008]
          Length = 590

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 176/631 (27%), Positives = 277/631 (43%), Gaps = 51/631 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           +  + I+ +     I +++ ++V   +R  N     YW CCPFH+EKTPSF     KGFY
Sbjct: 5   FENELIEQIKDANDIVSVVSEHVALKKRGKN-----YWGCCPFHNEKTPSFSVAPEKGFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           YCF CH  G+ + FL  L   +F+E+++RLA  A +PLP     P+   +++ +  L   
Sbjct: 60  YCFGCHASGNAIKFLMELEHLTFVEALERLANRANIPLPEAKLSPEQRARDERRKKLYEA 119

Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            ++A  FFH+ L + +  K    YL +RG+    IE FKLG+APD    L      +G  
Sbjct: 120 SDLAATFFHNCLTQTSIGKVGLDYLKKRGLTQATIETFKLGFAPDGWDKLYRAFHDRGID 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  ++E  L+         YD FRNR++FPI   +G+V+AFGGR +    + KYLNSPE+
Sbjct: 180 DSILLELNLVRKNQKG-QFYDFFRNRIMFPIMDGKGRVVAFGGRVM-DDSTPKYLNSPES 237

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGK L+ F  A   ++               ILVEGYMDV+S    GV NVV+SLG
Sbjct: 238 SIFEKGKLLFAFDKAYKSIR----------EEKQAILVEGYMDVISAHNHGVTNVVASLG 287

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T     +L + +  IVL +D D  G +AA +AI+L         +V  + +  G+DP
Sbjct: 288 TAYTRDHGHILMRQAEEIVLAYDMDGAGRQAAARAIEL---LQNTDFKVRVLAMPDGKDP 344

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D ++R +G  AF++L+ +++  +D L          N  + +  +   +   I +I  Q 
Sbjct: 345 DDYVRNHGGQAFKELVAKAVKPLDYLLSESLIKHDTNDTEGKQAVMADVFPYIANIDSQT 404

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    + +   L             Y R + K  +       S  L    L KG   K 
Sbjct: 405 QRDDALKTLALPLWLDNSTIFR----YFRDYVKKGQIELVDTASTPLPTQDLPKGDAEK- 459

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  LL        +LQ     L    ++  E + +   LF+ +  +       I  
Sbjct: 460 -------LLSLAFTDGEVLQHMMSYLPLEDFEKIEYRGIIEKLFTLYKSEGRLDETAIQS 512

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L  + +    + +                   D  +    AL    R   L  Q +   
Sbjct: 513 VLSSQEYDIYSRLVVMS---------------DDEYKVQVPALIRKIRLHSLREQYKAHS 557

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               Q+   G++   + L     E+   I +
Sbjct: 558 IMADQLKRAGDSTFISEL-HKCQEIQNLIRE 587


>gi|150390748|ref|YP_001320797.1| DNA primase [Alkaliphilus metalliredigens QYMF]
 gi|149950610|gb|ABR49138.1| DNA primase [Alkaliphilus metalliredigens QYMF]
          Length = 611

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 161/638 (25%), Positives = 298/638 (46%), Gaps = 38/638 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           +P + I ++     I+++I QY+   R  ++       A CPFH+EKTPSF+ +  K FY
Sbjct: 5   FPEELIDEIKAQNEITDVISQYISLKRIGSSN-----KALCPFHNEKTPSFNVSTEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
            CF C   GD + F+  +    F+E+++ LA  A + +P  D   ++ ++ K++     +
Sbjct: 60  KCFGCGEGGDVIQFIMKMENLDFMEAIKMLAQRANIEIPEKDQSLEVAEEMKLRNLFWEI 119

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A  +++H L   +      YL ERG+ S  I  F LG+AP+    L +HL Q+G+  
Sbjct: 120 NKKAAKYYYHCLTKEKSIA-LGYLSERGLISKTINTFGLGFAPNEWQGLIQHLTQEGYDL 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + I + GL+I     +  YDRFRNR+IFPI   RG V+ FGGR L      KYLNSPET 
Sbjct: 179 KDIEKCGLIIPKKEQSGYYDRFRNRIIFPIFDIRGNVVGFGGRVL-DDSLPKYLNSPETK 237

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF+K + LY    A  Y+           ++  +ILVEGYMDV+ L Q G +NVV++LGT
Sbjct: 238 LFNKSRILYGLNIARKYM-----------TTRQLILVEGYMDVIPLYQQGFKNVVAALGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT+   ++L +    ++LCFDGD+ G++A  ++I++          +  +++ +G DPD
Sbjct: 287 SLTKEHAQVLKRYCDDVILCFDGDEAGIKATLRSIEI---LKNGDFNIKVMMMPKGVDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           ++I+  GK  F++ I  +L +VD       E    +  + R  L   +   I  IK    
Sbjct: 344 TYIQSKGKEGFQRAINAALNVVDYQIMLAKEKYPQDKVEGRVNLARDIAKIIKQIKSPIE 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y Q +             E  G+ +  K N+  +       R   S     +     
Sbjct: 404 KEAYIQKVSQETGINQDAIALEVYGHQKKQKPNSETKKYSSNYNRNNNSKYKYIEALPPV 463

Query: 481 SLR-----EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
             +     E  L+  ++ +   +    +++    +   + Q +  +++     Q     +
Sbjct: 464 EQKGHTIIEKQLIKFMLLNINAIPHLMEKVEAEDFTIGKHQLIVEYIYE--NHQNLQGTQ 521

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ +   +      LK+    +    +        I    +  ++   L    R L +++
Sbjct: 522 QLVEHYPD------LKETMTDLLHIEIQHIDMNKAIDQYLRNLKRY-KLLYEIRQLQQRE 574

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++I    + +  +   ++   +   + +  +++ +I++
Sbjct: 575 KDILNN-SNLNKEEVEKELLEIGIEIMKKKLELQRIQA 611


>gi|239637626|ref|ZP_04678598.1| DNA primase [Staphylococcus warneri L37603]
 gi|239596844|gb|EEQ79369.1| DNA primase [Staphylococcus warneri L37603]
          Length = 602

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 153/626 (24%), Positives = 267/626 (42%), Gaps = 37/626 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIEQSVINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTD 116
             +CF C   G+   F   +   SF E+V+ L     + + V + + +    +       
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDVSFTEAVKELGERVNITVDVGNSQYQNTNTQIASEDLQ 115

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           +I + E+  +++H++L K    ++   YL ER      I+   +GYAP+S +   + L +
Sbjct: 116 MIEMHELMQEYYHYALMKTVEGEKALTYLKERDFPEQLIKERGIGYAPNSSHFCHDFLEK 175

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           KG+  E   EAGLL   + + + YDRFR+R++FP+++++G+++ +  RT    +  KYLN
Sbjct: 176 KGYDIELAYEAGLLSRNEENFSYYDRFRDRIMFPLKNAQGRIVGYSART-YTNQEPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F K K LYN   A   ++K          +  IIL+EG+MDV+    AG++ VV
Sbjct: 235 SPETPIFQKRKLLYNLDKARKSIRK----------NDEIILLEGFMDVIKSDHAGLKTVV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GT L+   +  + KL+  I L FDGD  G  A  K        L  G  V  V L  
Sbjct: 285 ASMGTQLSSEHITFIKKLTSNITLMFDGDFAGREATLKTGQ---TLLEQGLNVFVVQLPS 341

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD ++R YG  AF   + +      M      ++   N      +    +   I  +
Sbjct: 342 DMDPDEYVRKYGNDAFLDFVQKDKKSFVMFKVNTHKDEIQNNDLAYEKYLKEVTQDIAAM 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L+    Q + +  +  F+    E  G  +  + N         +       +++  
Sbjct: 402 TSPILQKKVLQDVAELFKVSFETLDYEV-GLRQQSQGNIPSYPDDAYAYEGQPQQVIQFN 460

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E ALL   +         +Q++    + N   +++++ L   +     +   
Sbjct: 461 QLTRHEKAERALLKHFMQDKDTFLNYHQQIEVDDFTNAYFKRIFNILHDYYSNNDMYQLS 520

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + Q +      E L  LD  V +        E       + Y   L   K    L    
Sbjct: 521 SMIQYIDSDDLREALISLDSYVLN--------EEPFEHELEDYINILNENKNEDSLE--- 569

Query: 596 EEIEKQIAQVTAKGEAEKTAILISIL 621
             +  ++ + T  G+ E     + ++
Sbjct: 570 -ALNHKLREATRIGDIELQKYYLQLI 594


>gi|85373961|ref|YP_458023.1| DNA primase [Erythrobacter litoralis HTCC2594]
 gi|84787044|gb|ABC63226.1| DNA primase [Erythrobacter litoralis HTCC2594]
          Length = 625

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 182/636 (28%), Positives = 301/636 (47%), Gaps = 34/636 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
               ++ +L   + +S++I +     R        ++ ACCPFH+EKTPSF  +D KGFY
Sbjct: 2   LSPQWLDELRARVTLSSVIMRTTKLQRAGR-----EWKACCPFHNEKTPSFTVSDEKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + +++   G  F+++V+ LA  AG+ +P  DP+  ++ + +  LI + E
Sbjct: 57  HCFGCGAHGDVIRWMTDQRGLQFMDAVKELAQEAGLEVPAPDPRAAQQAEKRASLIDVTE 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            +  +F   L+ A   R   YL  RG  +  I  F  GYAPDS+ +        GF +  
Sbjct: 117 ASQRWFVEQLRGAEGARARDYLASRGFSNGVIREFGFGYAPDSKQA---MGSGVGFEDAM 173

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPETIL 241
           ++E+G+ I+ ++ +  YDRFR+RL+ PI+ +RG+VIAFGGR L  +    KYLNSP+T L
Sbjct: 174 LVESGMRIETEDGSK-YDRFRDRLMLPIQDARGRVIAFGGRILDKRDGVAKYLNSPDTPL 232

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KG+ LYN   A    +++ R          I++VEGYMDV++L  AG+++ V+ LGTA
Sbjct: 233 FDKGRTLYNLHRAGPASRQTGR----------IVVVEGYMDVIALANAGIEDAVAPLGTA 282

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE Q+ +LW++  R +LCFDGD  G RAA +AI   L  L P + +  V L  G DPD 
Sbjct: 283 LTERQIEMLWRMVERPILCFDGDAAGQRAAMRAIQRALPLLRPAHSLGIVRLPAGLDPDD 342

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            I   G  A E ++ +   L+D LW+ E +    ++P+ +A L+  L   ++ I D  ++
Sbjct: 343 LINQRGAQAMEDILAKPGSLLDTLWQFERDAEPLDSPEAKAGLKARLMAHVDAIGDADIK 402

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y + + DR          +       + K+   R +  P+        ++G      +
Sbjct: 403 ALYRRELLDRFSDYAFPRREKAPWKPNGFSKSLASRPRPDPAAIRALQKTIQGGSRDALT 462

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                ++  LI HP  +      LA+          +   +             EI +  
Sbjct: 463 GA---VVAGLIRHPDQIDRHADALAEAA---ERDANIARAI------NPLLDMAEILEDG 510

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            E        +L    R +         +  D R+   +A++L      L         +
Sbjct: 511 GELPISADSGRLAPPDR-SHFSFLQEGTDPEDAREDLAEAVSLLVERPALETALAAATAR 569

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
                 +G   +   L+    +   ++ Q+ S +A 
Sbjct: 570 F-DTDPEGAFAEQQRLLKRKLDFEARLGQMASLQAA 604


>gi|116620136|ref|YP_822292.1| DNA primase [Candidatus Solibacter usitatus Ellin6076]
 gi|116223298|gb|ABJ82007.1| DNA primase [Candidatus Solibacter usitatus Ellin6076]
          Length = 580

 Score =  361 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 169/622 (27%), Positives = 283/622 (45%), Gaps = 51/622 (8%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           DF++ L   + I ++IG+YV   R  T      Y   CPFHDEK+PSF  +    FY CF
Sbjct: 2   DFVEQLKSSVDIVSVIGEYVRLRRSGTQR----YMGLCPFHDEKSPSFTVHVVHQFYKCF 57

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
           SC   GD + F+    G SF E+++ L+   G+P+P      ++  K++  L+ + E+A 
Sbjct: 58  SCGAGGDVVKFVMEKEGISFYEALKSLSERYGIPMPKRSQYADEDSKLRGSLLVMHELAA 117

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
           + F  +LK+        Y+ +RG+    +E F LGYA  S  +L     Q+ FS  ++ +
Sbjct: 118 ENFRDNLKSQAGDNARAYIAQRGLAPETVEHFGLGYADRSGRALVRLFEQREFSVAQMEQ 177

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
           +GL+    +  + YDRFRNRL+FPI + +G++IAFGGR LS  +  KYLNSPET ++ K 
Sbjct: 178 SGLVGKRQDG-SLYDRFRNRLMFPIHNEQGKIIAFGGRALSPDDEPKYLNSPETDIYKKS 236

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
             LYN   A   ++K  R           ILVEGYMDV+ +  AG  NVV+  GTA    
Sbjct: 237 HVLYNLHRAKQGIRKEDRA----------ILVEGYMDVIGVTAAGFHNVVACCGTAFGAQ 286

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
           Q++ + + + RI + FD D  G  A+ +++DL    L  G +V  V L  G DPD + + 
Sbjct: 287 QVQAIKRHTHRIAVNFDPDAAGAGASERSLDL---LLAEGMQVRIVELDGGLDPDEYCKE 343

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            G  A++  I  +      L  R        T + +  +   L   + +I D   R   +
Sbjct: 344 RGTEAYQARIDGAKGYFYWLADRARAKHDMRTSEGKVAVLNFLLPKVQNIADSLERMTVA 403

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             +   +       +     + +    +   R    P+  L                 E 
Sbjct: 404 NDVAGYIGVDQGMVL----DHFKKAASDRNERAIPRPANPLRHD--------------ER 445

Query: 486 ALLLTLINHPAILQEQYQELADIR-YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            LL+ L+ H     E  +++  +   +    ++++  +F+          EE++ RL E 
Sbjct: 446 MLLIALLTHSEGRAELIEQMKVLETIETLPSRRIFQAVFALDEAGGRIGFEELNSRLEEA 505

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               L + +  +  D  +      A++  +R+  QQ L L            +++ +I++
Sbjct: 506 DQNLLAQAVLNE--DGEISPEEVAASVESLRRSEQQYLRL------------QLKARISE 551

Query: 605 VTAKGEAEKTAILISILHEVHI 626
               G+ ++   L   L  +  
Sbjct: 552 SERAGKFDEAVRLTMELQGIEK 573


>gi|329725461|gb|EGG61944.1| DNA primase [Staphylococcus epidermidis VCU144]
          Length = 598

 Score =  361 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 156/635 (24%), Positives = 280/635 (44%), Gaps = 41/635 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSVIDEIKNKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV---VDPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     + + +         K    +  +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDVSFVEAVKDLGERVNIQVDIGQNQTNSSTKIASDELKM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  D++H++L K    +    YL ERG     I+  ++GYAPD+ +   + L +K
Sbjct: 116 IEMHELIKDYYHYALMKTVEGEEALNYLHERGFTDDLIKEREIGYAPDNSHFCHDFLEKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + T +DRFRNR++FP+++ +G+++ + GRT    +  KYLNS
Sbjct: 176 GYDIELAFEAGLLSRNEENFTYFDRFRNRIMFPLKNGQGRIVGYSGRT-YTDQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K + LYN   A  +++              IIL+EG+MDV+    AG++ VV+
Sbjct: 235 PETPIFQKRRILYNLNKARKFIR----------QQDEIILLEGFMDVIKSDYAGLKQVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S+GT L++  +  L KL+  + L FDGD  G  A  K        L  G  V  V L  G
Sbjct: 285 SMGTQLSQEHITFLQKLTQNVTLMFDGDYAGKEATLKTGQ---ALLNQGLNVYVVQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +IR Y    F K + +      +   +  +N   +      +        ++ + 
Sbjct: 342 MDPDDYIRKYDNEQFLKFVQQDKQSFVLFKVKMYQNEINHNDLAYEKHFKETVRDLSLVN 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              +R    Q I D  +   +    E     ++        +     Q       +    
Sbjct: 402 SGIIRNKLIQNIADIFKVNPETIQYELDATYQHQM----SSNTYPTFQDEPSKQQLILGR 457

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             K    E AL+  L          YQ++    + N+ L++++S+L+  + +  Y+   +
Sbjct: 458 LTKNEKAERALIKHLTKDKDTFLNYYQKIVPEDFTNSYLKRIFSYLYDYYSKNDYYTISD 517

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + Q +      E+L +LD+   +        +    +  + Y Q +        L     
Sbjct: 518 MMQYIESNELREVLIELDQYHLN--------DEPYENEIEDYIQIIKNNNNEDSLE---- 565

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            +  ++ + +  G++E     + ++  V+   +++
Sbjct: 566 SLNYKLREASRIGDSELQKYYLQLI--VNKNKNRM 598


>gi|23099400|ref|NP_692866.1| DNA primase [Oceanobacillus iheyensis HTE831]
 gi|22777629|dbj|BAC13901.1| DNA primase [Oceanobacillus iheyensis HTE831]
          Length = 604

 Score =  361 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 174/632 (27%), Positives = 292/632 (46%), Gaps = 36/632 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I+ +     I ++IG+Y+   ++  N     Y+  CPFH EKTPSF  +  K  +
Sbjct: 5   IPDEIIEQVKNANDIVDVIGEYIQLKKQGRN-----YFGLCPFHGEKTPSFSVSQEKQIF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-PKIEKKEKIQTDLIRLI 121
           +CF C   G+  +FL  +   +F E++Q LA   G+ LP     K     +    ++   
Sbjct: 60  HCFGCGKGGNVFTFLKEIDSFTFYEALQFLAEKQGIELPQTSIKKESFLSEEDQQVLTAN 119

Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +     +HH LK     K  + YL +RGI   A+E F++GYAP+ +    E L +KGFS+
Sbjct: 120 DWLMKLYHHLLKYTKDGKEGYQYLKDRGISDEALEDFQIGYAPNIKDFTLEFLTKKGFSK 179

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + +++ G+L    N     DRFR R+IFPIR++ G+ + F GR L  G   KYLNSPE  
Sbjct: 180 QLLVKNGIL-SAQNDHDVIDRFRGRVIFPIRNAIGKTVGFVGRALHDGVEPKYLNSPEGG 238

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K K L+NF  A  +++K           + +IL EG +DV+S  Q G++NVV++LGT
Sbjct: 239 LFQKSKILFNFDLAKKHIRK----------ENEVILFEGSVDVISAYQNGLKNVVATLGT 288

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q +LL +    +VLC+DGDD GL AAYKA  L       G  +    +   +DPD
Sbjct: 289 ALTESQAKLLNRYVETVVLCYDGDDAGLNAAYKASQL---LRSVGCEIRIAKMDPSDDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD-ERAELEIHLKNCINHIKDQK 419
           SFIR  G  AF+  I+ +       + R          + +R      +   ++ I+   
Sbjct: 346 SFIRSNGMEAFQNRIIRTSDTYMTFYMRYFRRDYNLKVEGDRIAYIEKVLKELSMIESTL 405

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R YY Q +        +  +T+   Y R  ++N+R   +         SS  + KL   
Sbjct: 406 EREYYVQELHKEFNLSHESLMTQLQSY-RNNQQNSRDNHRYNRYTNKGNSSY-QTKLHPA 463

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  L+  ++    I ++   +L    ++ N+ + + + L++ + E          +
Sbjct: 464 FINAEKKLIAYMLQDSYITEKVQNDLGA-AFNVNDHKIIATHLYAYYEEGNPPDIGLFME 522

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           RL E         L + V +A + +    +   ++    +  L    +        + ++
Sbjct: 523 RLSE-------DHLKKHVVEAVMMTDIANSTDEEIDDYIRFILNESNQNVS----IKSLK 571

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           ++      +    + A +   + E+  Q   +
Sbjct: 572 EKQRIAEQENNPMEAAKIAMEIIELQKQRKHM 603


>gi|167772126|ref|ZP_02444179.1| hypothetical protein ANACOL_03500 [Anaerotruncus colihominis DSM
           17241]
 gi|167665924|gb|EDS10054.1| hypothetical protein ANACOL_03500 [Anaerotruncus colihominis DSM
           17241]
          Length = 586

 Score =  361 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 141/557 (25%), Positives = 241/557 (43%), Gaps = 26/557 (4%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F+++L  +  I  ++  YV   RR   A        CPFH EK+PSF        +
Sbjct: 2   IPDLFLQELKNNSDIEQVVSSYVRLKRRGRIAN-----GLCPFHSEKSPSFTVYPDNQSF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           YCF C   GD ++F+  +    ++E+V+ LA  AG+ +P      +   K++  +  L  
Sbjct: 57  YCFGCGAGGDVITFIRKIENLEYVEAVRFLAQRAGMAMPEE-VADDGAAKMKMRIYALNR 115

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
                FH  LK+   K    YL ERG+ +  I  F LGYAP++     + LR +G+ +++
Sbjct: 116 ALARHFHDCLKSPAGKPGLDYLHERGLTNRTITHFGLGYAPEAWDGAVKFLRSQGYRDDE 175

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++ A +   G +    YD+FR R+IFPI   RG V+ FGGR +      KYLNS +T +F
Sbjct: 176 LLAAAVAARGRSG-GLYDQFRGRVIFPIIDLRGNVVGFGGRIMGDARGPKYLNSSDTPVF 234

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +NL+    A    +              +IL EGYMDV+++ QAG  N V++LGTAL
Sbjct: 235 KKSRNLFALNFAKASKR------------GGLILCEGYMDVIAMHQAGFDNAVATLGTAL 282

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q RL+ + +  +VL +D D PG  A  +A+ L       G ++  + ++  +DPD +
Sbjct: 283 TPEQSRLIAQYAQEVVLSYDSDGPGQAATKRAVSL---LGETGVKIRILSMTGAKDPDEY 339

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I+ +G   F  L+  +    +   ++       +T + +          +  + +   R 
Sbjct: 340 IKKFGAERFSLLLSGASNATEYEIEKLRRKYDCDTAEGKVAFLREFAALMVSVPNAVERD 399

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK---- 478
            Y       L+       T+     +   K  R    +         +  +    +    
Sbjct: 400 VYVSKTAAELEVSKSAIETQLKYEQKRAAKRRRGDASQLRVYSEAGPAEQRRDPQRARYI 459

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           + +L E  +L  L+ +P   +   Q +    +  +  + L   LF      +      + 
Sbjct: 460 RYALAEDKILAILMKNPDYYEHAAQRIGLDGFVTDRNRALAKVLFERLAAGQSVELPLLS 519

Query: 539 QRLCERGFGELLKQLDR 555
            +L E         L+ 
Sbjct: 520 AQLDEEQMAAAAGLLNS 536


>gi|113971242|ref|YP_735035.1| DNA primase [Shewanella sp. MR-4]
 gi|113885926|gb|ABI39978.1| DNA primase [Shewanella sp. MR-4]
          Length = 574

 Score =  361 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 173/620 (27%), Positives = 287/620 (46%), Gaps = 55/620 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+    I  LI + V   +   N     Y ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   G+ + F+       F+++++ LA   G+ +P      ++++  +  DL R
Sbjct: 56  FYHCFGCGAHGNAIDFVMEYDRLDFVDAIEDLAGQLGLEVPREQGSGKRQDDGLSRDLYR 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A+ FF   L+  +DK+    YL  RG+    +E F +G+APD    L    R    
Sbjct: 116 LMEEASRFFQTQLRQHQDKQKVIDYLTYRGLSDDIVEHFGIGFAPDGWDGLLSRYRHSQD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +++K++  G+LI  D+    YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 176 AQDKLLTTGMLISNDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +              +++VEGYMDV++L Q GV   V+SL
Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------DKVLIVEGYMDVVALAQYGVDFAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  ++ C+DGD  G  AA++A++  L  L PG++V F+ L + ED
Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK AFE+++  ++ L + L+             ++  L       I  I+D 
Sbjct: 344 PDSMVRKIGKDAFEQMMESAITLPEFLFDTLATKF----GTDKGNLAKQAFGLIEKIQDT 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L+    + +  +L       + +  G+     K       KG    L            
Sbjct: 400 VLQNLLLENLAHKLGMNSSDDMKKKLGFSVKQTKPTTSTGLKGRGTPL------------ 447

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                    +  L+ HP +      + A        +      L  +   +      ++ 
Sbjct: 448 ------RLAIALLVQHPELGVGLSPQPALNHLQMPGIDL--LPLLLELTREHRLNSAQLL 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++  +      L +L +            +    ++ + ++Q L ++   + + ++ +E+
Sbjct: 500 EQFRDSPHSGTLHKLAQW---------DHQVADENLLEKFKQTL-VWLNNQYIEQRYQEL 549

Query: 599 EKQIAQVTAKGEAEKTAILI 618
              + Q   K E  +   LI
Sbjct: 550 --SLKQTHTKEEKIQLQKLI 567


>gi|289666291|ref|ZP_06487872.1| DNA primase [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289670011|ref|ZP_06491086.1| DNA primase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 581

 Score =  361 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 178/633 (28%), Positives = 280/633 (44%), Gaps = 64/633 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    I  ++G  V   R+       +Y A CPFHDE++ SF  + +K F
Sbjct: 3   RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120
           Y+CF C   G  +SFL       F+++V  LA  AG+ +P    +   +++    +L   
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMDIPRETQQRTPQQQDDSRELYSA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E AT FF   L+ +  +R   YLD RG+D+     F++GYAPD   +L++ L       
Sbjct: 118 LEAATKFFQRQLEGS--ERARDYLDGRGVDADNRAHFQIGYAPDGYSALKDTLGTDARRM 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235
             +  AGL    D     YD+FR+R++FPI   RG+VIAFGGR +      +    KYLN
Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LFHKG+ LY  +      QK  R          +I+VEGYMDV+SL Q GV   V
Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T     LL++ + ++  CFDGD  G  AA+KA++ VL  +    +V F+ L  
Sbjct: 285 ATLGTATTPEHAELLFRNAHKVYFCFDGDRAGRSAAWKALESVLPKMREEKQVFFLFLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPDS +R  G  AF   + ++ P+ +  + +  +     +   +A      K  I  +
Sbjct: 345 GEDPDSIVRSQGPDAFNARLEKATPISEFYFNQRLQGAQLASRTGQAAFFDKCKPDIVAM 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            D   R      I++   Q                   A  R    PS    + ++ K  
Sbjct: 405 PDSGFRDIMVTRIKELTGQDI---------------FGASKRQSSLPSNTNGREAVPKRS 449

Query: 476 LSKKPSLREAALLLTLINHPAIL--QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           L         A +  L+  P++    +++ +LA +R    E   L   L     ++    
Sbjct: 450 LV-------RAAIAILLQQPSLALSLDRHHDLAGLRLPGVE---LLIELLDLVRQRPEIS 499

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + +   ER     L++L  Q                         +      +LL +
Sbjct: 500 TGALLEHFAEREEQVALQRLAAQELPGD----------EHSWAIELHDVVAQLDKQLLRQ 549

Query: 594 QKEEIEKQIAQVTAKGEAEKTA--ILISILHEV 624
           + EE++ +  +     + +K     L+  L  +
Sbjct: 550 RVEELQAK-QRAQGLDDTDKYEMRELLKALAAL 581


>gi|82751165|ref|YP_416906.1| DNA primase [Staphylococcus aureus RF122]
 gi|82656696|emb|CAI81123.1| DNA primase [Staphylococcus aureus RF122]
          Length = 599

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 151/632 (23%), Positives = 264/632 (41%), Gaps = 38/632 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +         +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNGKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              L+      +        ++   E          N    D+ G         + +   
Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +    E A L  L+         Y+ +    + N   + ++  L   + E   +   +
Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             Q +      E L  L++   +        +    +    Y   +    +        E
Sbjct: 520 AVQYVNSNELRETLISLEQYSLN--------DEPYENEIDDYVNVINENGQET-----IE 566

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +  ++ + T  G+ E     +  +   + + 
Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598


>gi|15609480|ref|NP_216859.1| DNA primase [Mycobacterium tuberculosis H37Rv]
 gi|15841850|ref|NP_336887.1| DNA primase [Mycobacterium tuberculosis CDC1551]
 gi|31793528|ref|NP_856021.1| DNA primase [Mycobacterium bovis AF2122/97]
 gi|148662171|ref|YP_001283694.1| DNA primase [Mycobacterium tuberculosis H37Ra]
 gi|148823544|ref|YP_001288298.1| DNA primase [Mycobacterium tuberculosis F11]
 gi|167969899|ref|ZP_02552176.1| DNA primase [Mycobacterium tuberculosis H37Ra]
 gi|215403753|ref|ZP_03415934.1| DNA primase [Mycobacterium tuberculosis 02_1987]
 gi|215412088|ref|ZP_03420852.1| DNA primase [Mycobacterium tuberculosis 94_M4241A]
 gi|215427724|ref|ZP_03425643.1| DNA primase [Mycobacterium tuberculosis T92]
 gi|215431283|ref|ZP_03429202.1| DNA primase [Mycobacterium tuberculosis EAS054]
 gi|215446584|ref|ZP_03433336.1| DNA primase [Mycobacterium tuberculosis T85]
 gi|219558330|ref|ZP_03537406.1| DNA primase [Mycobacterium tuberculosis T17]
 gi|253798583|ref|YP_003031584.1| DNA primase dnaG [Mycobacterium tuberculosis KZN 1435]
 gi|254232487|ref|ZP_04925814.1| DNA primase dnaG [Mycobacterium tuberculosis C]
 gi|254551390|ref|ZP_05141837.1| DNA primase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260187345|ref|ZP_05764819.1| DNA primase [Mycobacterium tuberculosis CPHL_A]
 gi|260201467|ref|ZP_05768958.1| DNA primase [Mycobacterium tuberculosis T46]
 gi|260205642|ref|ZP_05773133.1| DNA primase [Mycobacterium tuberculosis K85]
 gi|289443863|ref|ZP_06433607.1| DNA primase dnaG [Mycobacterium tuberculosis T46]
 gi|289447984|ref|ZP_06437728.1| DNA primase dnaG [Mycobacterium tuberculosis CPHL_A]
 gi|289553870|ref|ZP_06443080.1| DNA primase dnaG [Mycobacterium tuberculosis KZN 605]
 gi|289570483|ref|ZP_06450710.1| DNA primase dnaG [Mycobacterium tuberculosis T17]
 gi|289575035|ref|ZP_06455262.1| DNA primase dnaG [Mycobacterium tuberculosis K85]
 gi|289745631|ref|ZP_06505009.1| DNA primase [Mycobacterium tuberculosis 02_1987]
 gi|289750950|ref|ZP_06510328.1| DNA primase dnaG [Mycobacterium tuberculosis T92]
 gi|289754450|ref|ZP_06513828.1| DNA primase dnaG [Mycobacterium tuberculosis EAS054]
 gi|289758468|ref|ZP_06517846.1| DNA primase dnaG [Mycobacterium tuberculosis T85]
 gi|294994555|ref|ZP_06800246.1| DNA primase [Mycobacterium tuberculosis 210]
 gi|297634941|ref|ZP_06952721.1| DNA primase [Mycobacterium tuberculosis KZN 4207]
 gi|297731932|ref|ZP_06961050.1| DNA primase [Mycobacterium tuberculosis KZN R506]
 gi|298525829|ref|ZP_07013238.1| DNA primase [Mycobacterium tuberculosis 94_M4241A]
 gi|306776602|ref|ZP_07414939.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu001]
 gi|306780381|ref|ZP_07418718.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu002]
 gi|306785126|ref|ZP_07423448.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu003]
 gi|306789491|ref|ZP_07427813.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu004]
 gi|306793815|ref|ZP_07432117.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu005]
 gi|306798208|ref|ZP_07436510.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu006]
 gi|306804086|ref|ZP_07440754.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu008]
 gi|306808659|ref|ZP_07445327.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu007]
 gi|306968486|ref|ZP_07481147.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu009]
 gi|306972712|ref|ZP_07485373.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu010]
 gi|307085013|ref|ZP_07494126.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu012]
 gi|313659267|ref|ZP_07816147.1| DNA primase [Mycobacterium tuberculosis KZN V2475]
 gi|54038869|sp|P63963|PRIM_MYCBO RecName: Full=DNA primase
 gi|54041647|sp|P63962|PRIM_MYCTU RecName: Full=DNA primase
 gi|1781250|emb|CAB06159.1| PROBABLE DNA PRIMASE DNAG [Mycobacterium tuberculosis H37Rv]
 gi|13882115|gb|AAK46701.1| DNA primase [Mycobacterium tuberculosis CDC1551]
 gi|31619121|emb|CAD97233.1| PROBABLE DNA PRIMASE DNAG [Mycobacterium bovis AF2122/97]
 gi|124601546|gb|EAY60556.1| DNA primase dnaG [Mycobacterium tuberculosis C]
 gi|148506323|gb|ABQ74132.1| DNA primase [Mycobacterium tuberculosis H37Ra]
 gi|148722071|gb|ABR06696.1| DNA primase dnaG [Mycobacterium tuberculosis F11]
 gi|253320086|gb|ACT24689.1| DNA primase dnaG [Mycobacterium tuberculosis KZN 1435]
 gi|289416782|gb|EFD14022.1| DNA primase dnaG [Mycobacterium tuberculosis T46]
 gi|289420942|gb|EFD18143.1| DNA primase dnaG [Mycobacterium tuberculosis CPHL_A]
 gi|289438502|gb|EFD20995.1| DNA primase dnaG [Mycobacterium tuberculosis KZN 605]
 gi|289539466|gb|EFD44044.1| DNA primase dnaG [Mycobacterium tuberculosis K85]
 gi|289544237|gb|EFD47885.1| DNA primase dnaG [Mycobacterium tuberculosis T17]
 gi|289686159|gb|EFD53647.1| DNA primase [Mycobacterium tuberculosis 02_1987]
 gi|289691537|gb|EFD58966.1| DNA primase dnaG [Mycobacterium tuberculosis T92]
 gi|289695037|gb|EFD62466.1| DNA primase dnaG [Mycobacterium tuberculosis EAS054]
 gi|289714032|gb|EFD78044.1| DNA primase dnaG [Mycobacterium tuberculosis T85]
 gi|298495623|gb|EFI30917.1| DNA primase [Mycobacterium tuberculosis 94_M4241A]
 gi|308215064|gb|EFO74463.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu001]
 gi|308326813|gb|EFP15664.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu002]
 gi|308330332|gb|EFP19183.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu003]
 gi|308334165|gb|EFP23016.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu004]
 gi|308337970|gb|EFP26821.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu005]
 gi|308341575|gb|EFP30426.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu006]
 gi|308345147|gb|EFP33998.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu007]
 gi|308349450|gb|EFP38301.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu008]
 gi|308354001|gb|EFP42852.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu009]
 gi|308357943|gb|EFP46794.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu010]
 gi|308365464|gb|EFP54315.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu012]
 gi|323719253|gb|EGB28398.1| DNA primase dnaG [Mycobacterium tuberculosis CDC1551A]
 gi|328458350|gb|AEB03773.1| DNA primase dnaG [Mycobacterium tuberculosis KZN 4207]
          Length = 639

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 142/653 (21%), Positives = 251/653 (38%), Gaps = 45/653 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I +++G YV   R             CPFH+EK+PSFH   + G 
Sbjct: 4   RISDRDIAAIREGARIEDVVGDYVQLRRAGA----DSLKGLCPFHNEKSPSFHVRPNHGH 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD  +F+  +   SF+E+V+ LA   G  +         +     ++ L+ 
Sbjct: 60  FHCFGCGEGGDVYAFIQKIEHVSFVEAVELLADRIGHTISYTGAATSVQRDRGSRSRLLA 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A  F+  +L++        YL ER  D+ A   F  G+AP    SL +HL++KGF 
Sbjct: 120 ANAAAAAFYAQALQSDEAAPARQYLTERSFDAAAARKFGCGFAPSGWDSLTKHLQRKGFE 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            E++  AGL           DRF  RL++PIR+S G+V+ FG R L   +++  KY+N+P
Sbjct: 180 FEELEAAGLSRQ--GRHGPMDRFHRRLLWPIRTSAGEVVGFGARRLFDDDAMEAKYVNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K   ++    A   + K              ++VEGY DV+++  AGV   V+S
Sbjct: 238 ETLLYKKSSVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVAS 287

Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA     L +L +L          ++  FDGD+ G  AA KA D          +   
Sbjct: 288 CGTAFGGEHLAMLRRLMMDDSFFRGELIYVFDGDEAGRAAALKAFD---GEQKLAGQSFV 344

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G  A   L+    PL +   +        ++ + R         
Sbjct: 345 AVAPDGMDPCDLRLKCGDAALRDLVARRTPLFEFAIRAAIAEMDLDSAEGRVAALRRCVP 404

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR---------HRDQKG 461
            +  IKD  LR  Y++ +   +       +           K+ R          R  + 
Sbjct: 405 MVGQIKDPTLRDEYARQLAGWVGWADVAQVIGRVRGEAKRTKHPRLGRLGSTTIARAAQR 464

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
           P+        V+          +   L + + +PA+    +  L    + + E   + + 
Sbjct: 465 PTAGPPTELAVRPDPRDPTLWPQREALKSALQYPALAGPVFDALTVEGFTHPEYAAVRAA 524

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           + +           +    + ++    +   L  ++    +          D    Y   
Sbjct: 525 IDTAGGTSAGLSGAQWLDMVRQQTTSTVTSALISELGVEAIQV------DDDKLPRYIAG 578

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +    +   L RQ  E++ ++ +++   + ++   L   L  +      +  Q
Sbjct: 579 VLARLQEVWLGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 631


>gi|114048480|ref|YP_739030.1| DNA primase [Shewanella sp. MR-7]
 gi|113889922|gb|ABI43973.1| DNA primase [Shewanella sp. MR-7]
          Length = 574

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 173/620 (27%), Positives = 288/620 (46%), Gaps = 55/620 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+    I  LI + V   +   N     Y ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   G+ + F+       F+++++ LA   G+ +P      ++++  +  DL +
Sbjct: 56  FYHCFGCGAHGNAIDFVMEYDRLDFVDAIEDLAGQLGLEVPREQGTGKRQDDGLSRDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A+ FF   L+  +DK+    YL  RG+    +E F +G+APD    L    R    
Sbjct: 116 LMEEASRFFQTQLRQHQDKQKVIDYLAYRGLSDDIVEHFGIGFAPDGWDGLLSRYRHSQD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +++K++ AG+LI  D+    YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 176 AQDKLLTAGMLISNDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +              +++VEGYMDV++L Q GV   V+SL
Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------DKVLIVEGYMDVVALAQYGVDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  ++ C+DGD  G  AA++A++  L  L PG++V F+ L + ED
Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK AFE+++  ++ L + L+             ++  L       I  I+D 
Sbjct: 344 PDSMVRKIGKDAFEQMMESAITLPEFLFDTLATKF----GTDKGNLAKQAFGLIEKIQDT 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L+    + +  +L       + +  G+     K       KG    L            
Sbjct: 400 VLQNLLLENLAHKLGMNSSDDMKKKLGFSVKQTKPTASTGLKGRGTPL------------ 447

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                    +  L+ HP +      + A        +      L  +   +      ++ 
Sbjct: 448 ------RLAIALLVQHPELGVGLSPQPALNHLQMPGIDL--LPLLLELTREHRLNSAQLL 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++  +      L +L +            +    ++ + ++Q L ++   + + ++ +E+
Sbjct: 500 EQFRDSPHSGTLHKLAQW---------DHQVADENLLEKFKQTL-VWLNNQYIEQRYQEL 549

Query: 599 EKQIAQVTAKGEAEKTAILI 618
              + Q   K E  +   LI
Sbjct: 550 --SLKQTHTKEEKIQLQKLI 567


>gi|332799074|ref|YP_004460573.1| DNA primase [Tepidanaerobacter sp. Re1]
 gi|332696809|gb|AEE91266.1| DNA primase [Tepidanaerobacter sp. Re1]
          Length = 610

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 159/632 (25%), Positives = 273/632 (43%), Gaps = 41/632 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y  + IK++     I  ++ +Y    ++  N     +   CPFH+EKTPSF  +  K  +
Sbjct: 8   YSEEVIKEVQDRADIVEIVSEYTSLKKQGGN-----HIGLCPFHEEKTPSFSVDAEKQLF 62

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRLI 121
           YCF C + G+  +F+      +F E+V+ LA    + LP   D  +  + + + + +R+ 
Sbjct: 63  YCFGCGIGGNVFTFIMKKENLNFPEAVRYLADKFNIKLPGNMDKDLSLEFQEKREYLRVN 122

Query: 122 EVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            +A  +++H  L      +   Y+ ERG+ +  +E F LGYAP S   L +    +G   
Sbjct: 123 RLAAKYYNHCLLHTREGSKAMEYIKERGLTAETVEKFYLGYAPPSWDGLIKFAHFEGVKI 182

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + + + GL+I   ++   YDRFRNRL+FPI      +I FGGR L      KYLN+PET 
Sbjct: 183 DTLEKIGLIIPRKDNKGYYDRFRNRLMFPIEDVTKNIIGFGGRAL-DESMPKYLNTPETP 241

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG NLY                   + +   I+VEGYMD ++L Q G    V+SLGT
Sbjct: 242 LFSKGDNLYALSMIKK------------DPALDTIVVEGYMDCITLHQYGFNQSVASLGT 289

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT+ Q RLL K +  ++L +D D+ G  A  + ID+       G RV  + +  G+DPD
Sbjct: 290 ALTKNQARLLKKYTDGVILSYDADEAGKAATMRGIDI---LAQEGLRVKVLNMPNGKDPD 346

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I+ YG   F+KL+ +S+  +        ++ +  T D + +      + +  + ++  
Sbjct: 347 EVIKTYGPQHFQKLLTDSMDFISYKLFLAKKDINIQTHDGKLKFIKRAVDILTGVDNEPE 406

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y++ +   L    Q    E        K      + K    R       K       
Sbjct: 407 LELYAKKLASELGISVQAIKKEVQ----RRKLADNGYEYKKSHIRNNNKEFHKISQVTGF 462

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  LL  ++ +  + ++   +L    +     +K+   LF    + +      I   
Sbjct: 463 HKAERKLLKLILENDKLRKKMAGQLEPRFFTGKNTKKIADVLFEMIDKNQDIDSSYIFNY 522

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L E G  EL   L   V                       +L    +     +   ++ +
Sbjct: 523 LDEEGCAELSTILMENVVLKDGE--------------LINSLIKKVKQGYFKKSIVQVRE 568

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           QI +    G+ E+   L++   ++  +++++E
Sbjct: 569 QIRKAELLGQREEINSLLNTYQQLKAEMNEVE 600


>gi|326903959|gb|EGE50892.1| DNA primase dnaG [Mycobacterium tuberculosis W-148]
          Length = 639

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 142/653 (21%), Positives = 252/653 (38%), Gaps = 45/653 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I +++G YV   R             CPFH+EK+PSFH   + G 
Sbjct: 4   RISDRDIAAIREGARIEDVVGDYVQLRRAGA----DSLKGLCPFHNEKSPSFHVRPNHGH 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD  +F+  +   SF+E+V+ LA   G  +         +     ++ L+ 
Sbjct: 60  FHCFGCGEGGDVYAFIQKIEHVSFVEAVELLADRIGHTISYTGAATSVQRDRGSRSRLLA 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A  F+  +L++        YL ER  D+ A   F  G+AP    SL +HL++KGF 
Sbjct: 120 ANAAAAAFYAQALQSDEAAPARQYLTERSFDAAAARKFGCGFAPSGWDSLTKHLQRKGFE 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            E++  AGL           DRF  RL++PIR+S G+V+ FG R L   +++  KY+N+P
Sbjct: 180 FEELEAAGLSRQ--GRHGPMDRFHRRLLWPIRTSAGEVVGFGARRLFDDDAMEAKYVNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K   ++    A   + K              ++VEGY DV+++  AGV + V+S
Sbjct: 238 ETLLYKKSSVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTSAVAS 287

Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA     L +L +L          ++  FDGD+ G  AA KA D          +   
Sbjct: 288 CGTAFGGEHLAMLRRLMMDDSFFRGELIYVFDGDEAGRAAALKAFD---GEQKLAGQSFV 344

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G  A   L+    PL +   +        ++ + R         
Sbjct: 345 AVAPDGMDPCDLRLKCGDAALRDLVARRTPLFEFAIRAAIAEMDLDSAEGRVAALRRCVP 404

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR---------HRDQKG 461
            +  IKD  LR  Y++ +   +       +           K+ R          R  + 
Sbjct: 405 MVGQIKDPTLRDEYARQLAGWVGWADVAQVIGRVRGEAKRTKHPRLGRLGSTTIARAAQR 464

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
           P+        V+          +   L + + +PA+    +  L    + + E   + + 
Sbjct: 465 PTAGPPTELAVRPDPRDPTLWPQREALKSALQYPALAGPVFDALTVEGFTHPEYAAVRAA 524

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           + +           +    + ++    +   L  ++    +          D    Y   
Sbjct: 525 IDTAGGTSAGLSGAQWLDMVRQQTTSTVTSALISELGVEAIQV------DDDKLPRYIAG 578

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +    +   L RQ  E++ ++ +++   + ++   L   L  +      +  Q
Sbjct: 579 VLARLQEVWLGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 631


>gi|165976902|ref|YP_001652495.1| DNA primase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165877003|gb|ABY70051.1| DNA primase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
          Length = 580

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 175/615 (28%), Positives = 285/615 (46%), Gaps = 50/615 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DL+    I  LI   V   +        DY ACCPFH EK+PSF  + SK F
Sbjct: 4   SIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQSKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       F E+++ LAA+ G+ +P       D K +   K + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVMARDGKPQASYKTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L+E  + F+  +L      +   YL  RG+    I  F++G+A +S  S+       
Sbjct: 119 LYELLEAISRFYQQNLTQDIPSQS--YLQSRGLSPEIIARFEIGFAYNSMDSVLRKFGT- 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              E + +    +I  ++S   YD+FRNR++FPIR  RG+VIAFGGR +   E  KYLNS
Sbjct: 176 NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ ++HKG  LY  F AL           +  + + +++VEGYMDV++L Q GV NVV+
Sbjct: 235 PESAIYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGTA T  Q++ +++++ +++ C+DGD  G  AA++A +  L +L  G ++ F+ L  G
Sbjct: 285 SLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDSF+R  GK  FE  +  ++ L D L+         ++ + +++L       IN I 
Sbjct: 345 EDPDSFVRAQGKQGFEGYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLINRIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR Y    +  +L  L    +           +    +  +     +          
Sbjct: 405 GEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVQTPQIKRTPM---------- 454

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     L+  L+ +P +++      A    +    + L   L     ++       
Sbjct: 455 --------RLLIALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVSMGA 505

Query: 537 IHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRL 590
           + +   ++      ELL   +  V    + +   E        + +   + L    R   
Sbjct: 506 LLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDRSLG 565

Query: 591 LS-RQKEEIEKQIAQ 604
           LS  +K+E+   IAQ
Sbjct: 566 LSAEEKQELVMLIAQ 580


>gi|282850494|ref|ZP_06259873.1| DNA primase [Veillonella parvula ATCC 17745]
 gi|282579987|gb|EFB85391.1| DNA primase [Veillonella parvula ATCC 17745]
          Length = 590

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 176/631 (27%), Positives = 279/631 (44%), Gaps = 51/631 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           +  + I+ +     I +++ ++V   +R  N     YW CCPFH+EKTPSF     KGFY
Sbjct: 5   FENELIEQIKDANDIVSVVSEHVALKKRGKN-----YWGCCPFHNEKTPSFSVAPEKGFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           YCF CH  G+ + FL  L   +F+E+++RLA  A +PLP     P+   +++ +  L   
Sbjct: 60  YCFGCHASGNAIKFLMELEHLTFVEALERLANRANIPLPEAKLSPEQRARDERRKKLYEA 119

Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            ++A+ FFH+ L + +  K    YL +RG+    IE FKLG+APD    L     ++G  
Sbjct: 120 SDLASTFFHNCLTQTSIGKVGLDYLKKRGLTQETIETFKLGFAPDGWDKLYRAFHERGID 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  ++E  L+         YD FRNR++FPI   +G+V+AFGGR +    + KYLNSPE+
Sbjct: 180 DSILLELNLVRKNQKG-QFYDFFRNRIMFPIMDGKGRVVAFGGRVM-DDSTPKYLNSPES 237

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGK L+ F  A   ++               ILVEGYMDV+S    GV NVV+SLG
Sbjct: 238 SIFEKGKLLFAFDKAYKSIR----------EEKQAILVEGYMDVISAHNHGVTNVVASLG 287

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T     +L + +  IVL +D D  G +AA +AI+L         +V  + +  G+DP
Sbjct: 288 TAYTRDHGHILMRQAEEIVLAYDMDGAGRQAAARAIEL---LQNTDFKVRVLAMPDGKDP 344

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D ++R +G  AF++L+ +++  +D L          N  + +  +   +   I +I  Q 
Sbjct: 345 DDYVRNHGGQAFKELVAKAVKPLDYLLSESLIKHDTNDTEGKQAVMADVFPYIANIDSQT 404

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    + +   L             Y R + K  +       S  L    L KG   K 
Sbjct: 405 QRDDALKTLALPLWLDNSTIFR----YFRDYVKKGQIELVDTASTPLPTQDLPKGDAEK- 459

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  LL        +LQ     L    ++  E + +   LF+ +  +       I  
Sbjct: 460 -------LLSLAFTDGEVLQHMMSYLPLEDFEKIEYRGIIEKLFTLYKSEGRLDETAIQS 512

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L  + +    + +                   D  +    AL    R   L  Q +   
Sbjct: 513 VLSSQEYDIYSRLVVMS---------------DDEYKVQVPALIRKIRLHSLREQYKAHS 557

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               Q+   G++   + L     E+   I +
Sbjct: 558 IMADQLKRAGDSTFISEL-HKCQEIQNLIRE 587


>gi|166710398|ref|ZP_02241605.1| DNA primase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 582

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 171/633 (27%), Positives = 278/633 (43%), Gaps = 63/633 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    I  ++G  V   R+       +Y A CPFHDE++ SF  + +K F
Sbjct: 3   RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120
           Y+CF C   G  +SFL       F+++V  LA  AG+ +P    +   +++    +L   
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEIPRETQQRTPQQQDDSRELYSA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E AT FF   L+ +  +R   YLD RG+D+     F++GYAPD   +L++ L       
Sbjct: 118 LEAATRFFQRQLEGS--ERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235
             +  AGL    D     YD+FR+R++FPI   RG+VIAFGGR +      +    KYLN
Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LFHKG+ LY  +      QK  R          +I+VEGYMDV+SL Q GV   V
Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T     LL++ +P +  CFDGD+ G +A ++A++ VL  +  G +  F+ L  
Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPD+ +R  G  AF++ + ++ PL    +   +   + +T D +A L    +  +  I
Sbjct: 345 GEDPDTIVRKEGAPAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPMLAQI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +        Q +                      +   + R     +    + SLV+  
Sbjct: 405 PEGAFGDLMKQELSRLTG---------VGASASAQQSAPKPRPPARMAAPTQKRSLVRAS 455

Query: 476 LSKKPSLREAALLLTLINHPAILQ--EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                       +  L+  P++    E   + + +R  + +   L   L     ++    
Sbjct: 456 ------------IAILLQRPSLAASLEGVHDFSGLRLPDID---LLMELLDLVRQRPEIS 500

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + +   ER     L+ L  Q                         +      +LL +
Sbjct: 501 TGALLEHFAERDEQAALQTLAAQELPGD----------EHSWAIELHDVVAQLDKQLLRQ 550

Query: 594 QKEEIEKQIAQVTAKGEAEKTA--ILISILHEV 624
           + EE++ +  +     + +K     L+  L  +
Sbjct: 551 RVEELQAK-QRAQGLDDTDKYEMRELLKALAAL 582


>gi|294792117|ref|ZP_06757265.1| DNA primase [Veillonella sp. 6_1_27]
 gi|294457347|gb|EFG25709.1| DNA primase [Veillonella sp. 6_1_27]
          Length = 597

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 176/631 (27%), Positives = 279/631 (44%), Gaps = 51/631 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           +  + I+ +     I +++ ++V   +R  N     YW CCPFH+EKTPSF     KGFY
Sbjct: 12  FENELIEQIKDANDIVSVVSEHVALKKRGKN-----YWGCCPFHNEKTPSFSVAPEKGFY 66

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           YCF CH  G+ + FL  L   +F+E+++RLA  A +PLP     P+   +++ +  L   
Sbjct: 67  YCFGCHASGNAIKFLMELEHLTFVEALERLANRANIPLPEAKLSPEQRARDERRKKLYEA 126

Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            ++A+ FFH+ L + +  K    YL +RG+    IE FKLG+APD    L     ++G  
Sbjct: 127 SDLASTFFHNCLTQTSIGKVGLDYLKKRGLTQETIETFKLGFAPDGWDKLYRAFHERGID 186

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  ++E  L+         YD FRNR++FPI   +G+V+AFGGR +    + KYLNSPE+
Sbjct: 187 DSILLELNLVRKNQKG-QFYDFFRNRIMFPIMDGKGRVVAFGGRVM-DDSTPKYLNSPES 244

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGK L+ F  A   ++               ILVEGYMDV+S    GV NVV+SLG
Sbjct: 245 SIFEKGKLLFAFDKAYKSIR----------EEKQAILVEGYMDVISAHNHGVTNVVASLG 294

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T     +L + +  IVL +D D  G +AA +AI+L         +V  + +  G+DP
Sbjct: 295 TAYTRDHGHILMRQAEEIVLAYDMDGAGRQAAARAIEL---LQNTDFKVRVLAMPDGKDP 351

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D ++R +G  AF++L+ +++  +D L          N  + +  +   +   I +I  Q 
Sbjct: 352 DDYVRNHGGQAFKELVAKAVKPLDYLLSESLIKHDTNDTEGKQAVMADVFPYIANIDSQT 411

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    + +   L             Y R + K  +       S  L    L KG   K 
Sbjct: 412 QRDDALKTLALPLWLDNSTIFR----YFRDYVKKGQIELVDTASTPLPTQDLPKGDAEK- 466

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  LL        +LQ     L    ++  E + +   LF+ +  +       I  
Sbjct: 467 -------LLSLAFTDGEVLQHMMSYLPLEDFEKIEYRGIIEKLFTLYKSEGRLDETAIQS 519

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L  + +    + +                   D  +    AL    R   L  Q +   
Sbjct: 520 VLSSQEYDIYSRLVVMS---------------DDEYKVQVPALIRKIRLHSLREQYKAHS 564

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               Q+   G++   + L     E+   I +
Sbjct: 565 IMADQLKRAGDSTFISEL-HKCQEIQNLIRE 594


>gi|315195464|gb|EFU25851.1| DNA primase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 599

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 151/632 (23%), Positives = 264/632 (41%), Gaps = 38/632 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +         +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHEISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              L+      +        ++   E          N    D+ G         + +   
Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +    E A L  L+         Y+ +    + N   + ++  L   + E   +   +
Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             Q +      E L  L++   +        +    +    Y   +    +        E
Sbjct: 520 AVQYVNSNELRETLISLEQYSLN--------DEPYENEIDDYVNVINENGQET-----IE 566

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +  ++ + T  G+ E     +  +   + + 
Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598


>gi|84502757|ref|ZP_01000876.1| DNA primase [Oceanicola batsensis HTCC2597]
 gi|84389152|gb|EAQ01950.1| DNA primase [Oceanicola batsensis HTCC2597]
          Length = 618

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 199/565 (35%), Positives = 290/565 (51%), Gaps = 23/565 (4%)

Query: 27  WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFI 86
           WD RK+N  KGD+WA CPFH EK+ SFH +D KGFYYCF CH KGD +SFL       F+
Sbjct: 2   WDMRKSNQAKGDWWAPCPFHQEKSASFHVDDRKGFYYCFGCHAKGDAISFLKDSENMGFM 61

Query: 87  ESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDE 146
           E+V+ LA  AG+ +P  DP+   K + + +L  ++E A   +   L +        YL+ 
Sbjct: 62  EAVEALAQEAGMQMPARDPRAAAKAEKRAELADVMEAAVRHYRMMLNSGAAAEARAYLER 121

Query: 147 RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRL 206
           RG+     E F++G+AP+    L   LR +   E+ I+ AGL+   D     YD FRNR+
Sbjct: 122 RGLSPETQERFEIGFAPEGWQGLWTQLRNRDIPEDLILRAGLVKTSDRGGKPYDVFRNRI 181

Query: 207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDV 266
           +FPIR +RG+ IAFGGR +   +  KYLNSPET LF KG++LYN   A     K      
Sbjct: 182 MFPIRDARGRCIAFGGRAMDPDDKAKYLNSPETELFDKGRSLYNHGPAREAAGK------ 235

Query: 267 RRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDP 326
                  +I+ EGYMDV++L  AG +  V+ LGTA+TE QL +LW +SP  V+  DGD  
Sbjct: 236 ----GRPLIVAEGYMDVIALSAAGFEGAVAPLGTAVTESQLAMLWAISPEPVVALDGDTA 291

Query: 327 GLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLW 386
           GLRAA + + + L  +  G  + F LL  G+DPD  I+  G  A + ++  + PLVD+LW
Sbjct: 292 GLRAAMRLMHVALPLMEAGKSLRFALLPEGKDPDDLIKAEGAKAMQAVLDRAFPLVDLLW 351

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
           +  TE +SF++P+ RA L+  L+  I  I D  LR +Y  AI++   QLF+         
Sbjct: 352 REATEGKSFDSPERRAALDRDLREKIRKIPDVSLRRHYGDAIKEMRYQLFRPQR------ 405

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
                     R  +        S L       +  LRE+ ++ T+I  PA +      L 
Sbjct: 406 ---QGSWTPRRKSQPIRPTTKASFLTSAGPMAEHQLRESVIVATIIATPAAVSGFEGPLE 462

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            +   + +L ++   + +   +    + E I + L     GE L +L      A   +  
Sbjct: 463 LMDCADPDLGRMRDIVLTHGSDGPDAVNEAISRELG----GEALDRLMSHPHVAICPTLR 518

Query: 567 TEANIVDVRQGYQQALALYKRFRLL 591
              N+   +    + LA  K  R L
Sbjct: 519 KAGNVELAQMTLAEELAKLKARRGL 543


>gi|168187757|ref|ZP_02622392.1| DNA primase [Clostridium botulinum C str. Eklund]
 gi|169294409|gb|EDS76542.1| DNA primase [Clostridium botulinum C str. Eklund]
          Length = 597

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 170/633 (26%), Positives = 279/633 (44%), Gaps = 39/633 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I+ +     I ++I + V   R   N     +   CPFH+EKTPSF  +  K  Y
Sbjct: 2   ISEEIIEKIKEQNDIVDVISESVKLKRTGRN-----FIGLCPFHNEKTPSFSVSQEKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+  +F+       F+E+V+ L     + +   D K +  +     L ++  
Sbjct: 57  KCFGCGEAGNVFTFVMKTKNLPFVEAVKYLGDKVNIHIEENDYKNQAYKNKNDKLYKINV 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  ++  +L+   +K+   Y   RGI +  I  F LGYAP   ++L  +L+ KG++E  
Sbjct: 117 EAARYYFKNLQ--INKKATKYFTNRGIVNKTIRRFGLGYAPSGWHNLMNYLKNKGYTELD 174

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++ AGL+I G  + + YDRFR R+IFP+   RG+VI FGGR L      KYLNSPET +F
Sbjct: 175 LVNAGLIIRG-KNNSIYDRFRERVIFPVFDYRGRVIGFGGRVL-DDSKPKYLNSPETDIF 232

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG NLY    A+   +           S  II+VEGYMD +SL Q G+ NVV+SLGTAL
Sbjct: 233 KKGTNLYGLNFAIKNNK-----------SRTIIIVEGYMDCISLYQYGIDNVVASLGTAL 281

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q +LL +   +I++ +D D  G  A  + + +       G  +  + +  G+DPD F
Sbjct: 282 TYDQGKLLKRYVDKIIISYDADFAGQSATLRGLKI---LKKQGFDLKVLDIPEGKDPDEF 338

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I+ +GK AF KLI ESLPLVD   K        +  +   +   +    IN + +   + 
Sbjct: 339 IKNHGKEAFMKLIDESLPLVDYELKMARFGLDISNEEMLIKYVNNACEIINKL-NPIEKD 397

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + +        Q      +   R        R  KG   +       K  +      
Sbjct: 398 IYIRKLSQETGLKEQAIYDLLNVKDRKNYIKDEKRYSKGNFGQ-------KLYVEPAYMK 450

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            +  L+  +I +        Q + +  +  +  +K++  +       +    + +     
Sbjct: 451 TQRKLIKIMILNIESYDYVLQFVNEEDFIIDSHKKIFKLIKDQVNHNE----DNLKNIEK 506

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                    +  R+         + + +  D+   Y + +  +K    L   KEE+ K+I
Sbjct: 507 SIEIKCDDVESSREWTKIQQIKFSEDIDYKDLVNAYIKEIKKFK----LEESKEEVMKKI 562

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
               A+G  E++  L+  L ++   I  +   E
Sbjct: 563 KYYEAQGLFEESLNLVKELEKIQNNIMAMNHCE 595


>gi|302333238|gb|ADL23431.1| DNA primase [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 599

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 151/632 (23%), Positives = 264/632 (41%), Gaps = 38/632 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +         +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              L+      +        ++   E          N    D+ G         + +   
Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +    E A L  L+         Y+ +    + N   + ++  L   + E   +   +
Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             Q +      E L  L++   +        +    +    Y   +    +        E
Sbjct: 520 AVQYVNSNELRETLISLEQYSLN--------DEPYENEIDDYVNVINENGQET-----IE 566

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +  ++ + T  G+ E     +  +   + + 
Sbjct: 567 SLNHKLREATRIGDVELQKHYLQQIVAKNKER 598


>gi|33151867|ref|NP_873220.1| DNA primase [Haemophilus ducreyi 35000HP]
 gi|33148088|gb|AAP95609.1| DNA primase [Haemophilus ducreyi 35000HP]
          Length = 579

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 174/614 (28%), Positives = 285/614 (46%), Gaps = 49/614 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DL+    I  LI   V   +        +Y +CCPFH EK+PSF  + +K F
Sbjct: 4   SIPRSFIDDLVARTDIVELINSRVKLKKAGR-----EYQSCCPFHHEKSPSFTVSPTKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE----KIQTDL 117
           YYCF C   G+ +SFL       F E+V+ LAA+ G+ +P  +   + K     + + +L
Sbjct: 59  YYCFGCGAHGNAISFLMEYDKLEFPEAVEELAAMQGLEVPRENATHQAKSVVSYQAKRNL 118

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             L+   + F+   L      +   YL +RG+ +  I  F++G+AP+S  ++        
Sbjct: 119 YELLAQISQFYQQHLVQDSASQA--YLQQRGLSAEIISRFEIGFAPNSMDAVLCKFGINR 176

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
              +K+++ G+L    +S   YD+FRNR++FPIR  RG+V+AFGGR +   E  KYLNSP
Sbjct: 177 DEIQKLLDTGML-SQHDSGRVYDKFRNRVMFPIRDKRGRVVAFGGRVM-GDEKPKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+  +HKG  LY  F AL           +  + + +++VEGYMDV++L Q GV N V+S
Sbjct: 235 ESATYHKGNELYGLFQALQ----------QNENPAALLVVEGYMDVVALAQFGVNNAVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA T  Q++ +++ + +++ C+DGD  G  AA++A +  L +L  G ++ F+ L  GE
Sbjct: 285 LGTATTGEQIQQMFRCTEQVICCYDGDRAGREAAWRAFENALPYLQDGRQLKFIFLPDGE 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSFIR  GK  FE  +   + L D L+         ++ + +++L       IN I  
Sbjct: 345 DPDSFIRQQGKAGFEAYLQAGMSLSDFLFDNLIAQVDLSSKEGKSKLAALAVPLINRIPG 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           + LR Y    +  +L  L    +           + +  +        +           
Sbjct: 405 EMLRVYLRNMLGQKLGILDPAQLEAILPAKVPANRKSIAQALPIKRTPM----------- 453

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                    L+  L+ +P ++Q      A         Q L   L     E+       +
Sbjct: 454 -------RLLIALLLQNPELVQFVPDISALQSLQEPGFQLLVE-LIEVCREKVGISMGVL 505

Query: 538 HQRLCERGFGELLKQL---DRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRLL 591
            +   ++     L++L   D  V    + S   E        + +   +AL    R   L
Sbjct: 506 LEHWRDKPHYRTLERLANWDHLVTPENVESTFIETLDFLYAKLVEKRIEALIAKDRMHGL 565

Query: 592 S-RQKEEIEKQIAQ 604
           +  +K+E+   I+Q
Sbjct: 566 NAAEKQELALLISQ 579


>gi|307250748|ref|ZP_07532681.1| DNA primase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306857216|gb|EFM89339.1| DNA primase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 580

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 176/615 (28%), Positives = 284/615 (46%), Gaps = 50/615 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DL+    I  LI   V   +        DY ACCPFH EK+PSF  + SK F
Sbjct: 4   SIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQSKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       F E+++ LAA+ G+ +P       D K +   K + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVMARDGKPQASYKTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L+E  + F+  +L      +   YL  RG+    I  F++G+A +S  S+       
Sbjct: 119 LYELLEAISRFYQQNLTQDIPSQS--YLQSRGLSPEIIARFEIGFAYNSMDSVLRKFGT- 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              E + +    +I  ++S   YD+FRNR++FPIR  RG+VIAFGGR +   E  KYLNS
Sbjct: 176 NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+  +HKG  LY  F AL           +  + + +++VEGYMDV++L Q GV NVV+
Sbjct: 235 PESATYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGTA T  Q++ +++++ +++ C+DGD  G  AA++A +  L +L  G ++ F+ L  G
Sbjct: 285 SLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDSF+R  GK  FE  +  ++ L D L+         ++ + +++L       IN I 
Sbjct: 345 EDPDSFVRAQGKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLINRIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR Y    +  +L  L    +           +    R  +     +          
Sbjct: 405 GEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVRTPQIKRTPM---------- 454

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     L+  L+ +P +++      A    +    + L   L     ++       
Sbjct: 455 --------RLLIALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVSMGA 505

Query: 537 IHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRL 590
           + +   ++      ELL   +  V    + +   E        + +   + L    R   
Sbjct: 506 LLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDRSLG 565

Query: 591 LS-RQKEEIEKQIAQ 604
           LS  +K+E+   IAQ
Sbjct: 566 LSAEEKQELVMLIAQ 580


>gi|49483811|ref|YP_041035.1| DNA primase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425687|ref|ZP_05602111.1| DNA primase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428348|ref|ZP_05604746.1| DNA primase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430985|ref|ZP_05607365.1| DNA primase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433673|ref|ZP_05610031.1| DNA primase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436587|ref|ZP_05612631.1| DNA primase [Staphylococcus aureus subsp. aureus M876]
 gi|282904144|ref|ZP_06312032.1| DNA primase [Staphylococcus aureus subsp. aureus C160]
 gi|282905971|ref|ZP_06313826.1| DNA primase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908881|ref|ZP_06316699.1| DNA primase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911200|ref|ZP_06319002.1| DNA primase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914369|ref|ZP_06322155.1| DNA primase [Staphylococcus aureus subsp. aureus M899]
 gi|282919338|ref|ZP_06327073.1| DNA primase [Staphylococcus aureus subsp. aureus C427]
 gi|282924663|ref|ZP_06332331.1| DNA primase [Staphylococcus aureus subsp. aureus C101]
 gi|283958326|ref|ZP_06375777.1| DNA primase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503443|ref|ZP_06667290.1| DNA primase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510460|ref|ZP_06669166.1| DNA primase [Staphylococcus aureus subsp. aureus M809]
 gi|293531000|ref|ZP_06671682.1| DNA primase [Staphylococcus aureus subsp. aureus M1015]
 gi|295428140|ref|ZP_06820772.1| DNA primase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590894|ref|ZP_06949532.1| DNA primase [Staphylococcus aureus subsp. aureus MN8]
 gi|78099123|sp|Q6GGD7|PRIM_STAAR RecName: Full=DNA primase
 gi|49241940|emb|CAG40634.1| DNA primase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271381|gb|EEV03527.1| DNA primase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275189|gb|EEV06676.1| DNA primase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278415|gb|EEV09051.1| DNA primase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281766|gb|EEV11903.1| DNA primase [Staphylococcus aureus subsp. aureus E1410]
 gi|257283938|gb|EEV14061.1| DNA primase [Staphylococcus aureus subsp. aureus M876]
 gi|282313498|gb|EFB43893.1| DNA primase [Staphylococcus aureus subsp. aureus C101]
 gi|282317148|gb|EFB47522.1| DNA primase [Staphylococcus aureus subsp. aureus C427]
 gi|282321550|gb|EFB51875.1| DNA primase [Staphylococcus aureus subsp. aureus M899]
 gi|282324895|gb|EFB55205.1| DNA primase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327145|gb|EFB57440.1| DNA primase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331263|gb|EFB60777.1| DNA primase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595762|gb|EFC00726.1| DNA primase [Staphylococcus aureus subsp. aureus C160]
 gi|283790475|gb|EFC29292.1| DNA primase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920268|gb|EFD97334.1| DNA primase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095109|gb|EFE25374.1| DNA primase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466824|gb|EFF09344.1| DNA primase [Staphylococcus aureus subsp. aureus M809]
 gi|295128498|gb|EFG58132.1| DNA primase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575780|gb|EFH94496.1| DNA primase [Staphylococcus aureus subsp. aureus MN8]
 gi|312437969|gb|ADQ77040.1| DNA primase [Staphylococcus aureus subsp. aureus TCH60]
          Length = 599

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 151/632 (23%), Positives = 264/632 (41%), Gaps = 38/632 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +         +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              L+      +        ++   E          N    D+ G         + +   
Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +    E A L  L+         Y+ +    + N   + ++  L   + E   +   +
Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             Q +      E L  L++   +        +    +    Y   +    +        E
Sbjct: 520 AVQYVNSNELRETLISLEQYSLN--------DEPYENEIDDYVNVINENGQET-----IE 566

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +  ++ + T  G+ E     +  +   + + 
Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598


>gi|310643032|ref|YP_003947790.1| DNA primase [Paenibacillus polymyxa SC2]
 gi|309247982|gb|ADO57549.1| DNA primase [Paenibacillus polymyxa SC2]
          Length = 606

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 161/632 (25%), Positives = 276/632 (43%), Gaps = 38/632 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           N P D I+ +L H  I + + +YV   ++            CPFH EKTPSF     +  
Sbjct: 7   NIPDDIIESVLQHHDIVDTVSKYVHLTKQGK-----YMKGLCPFHSEKTPSFTVTPDRQI 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIRL 120
           +YC+ C   G+ + F+  + G SF E+V+ +A  + +PL     +    +  +   L++ 
Sbjct: 62  FYCYGCGAGGNAIKFMMEIEGLSFPEAVRTMAEESHIPLGEWQGRDSSHQHPELDRLLQA 121

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E+ +  +H  LKN    K    YL  RG     I+ F++GYAP+   ++ + L ++ F 
Sbjct: 122 YELTSKMYHFLLKNTEHGKPAMEYLRSRGFSDKIIDQFQIGYAPNRWDTIVQFLEKRSFD 181

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
             ++ + GL+          DRFR+R++FPI +  G+VIAF GR L +G+  KYLNSPET
Sbjct: 182 PVEMEKGGLISPRHEGDGYVDRFRDRIMFPIWNRNGKVIAFAGRILGEGQP-KYLNSPET 240

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LF+K + LYN   A   ++K              +L EGY DV+S  +AGVQN V+++G
Sbjct: 241 KLFNKSRTLYNLHHAKTSIRKL----------RQSVLFEGYGDVISAWEAGVQNGVAAMG 290

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE+   +L  L   +++C+DGD  G  AA K   L       G  V   L+S G DP
Sbjct: 291 TALTEHHATMLKGLCDEVIICYDGDRAGQAAALKNFPL---LENAGLHVKVALVSDGMDP 347

Query: 360 DSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           D FIR YG   F+ ++I  ++  V        +N      + R        N I  +   
Sbjct: 348 DDFIRQYGAERFQRQIIESAVSTVKFKLIYLKKNHILQEEEGRIAYSREALNVIAPLSSP 407

Query: 419 KLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
             R  Y + +   ++  F+    E        +  +    + +    + R  +  +    
Sbjct: 408 TEREVYLREVSAEVKVDFETLKQECNLLRQSLQKKQNFGDNNENGWNNGRHKKGQVSTPN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           L     + E  LL  ++      +   + L D  ++  +   + ++L++ + + K     
Sbjct: 468 LLPAYHVAERRLLHWMMQDLEAAEYVEKHLGD-AFNIEDHAAIAAYLYAYYAQGKLPDTS 526

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                L +        +L++ V    +  A        +    +Q      R   L  Q 
Sbjct: 527 RFISSLQD-------DRLEKNVSSIMMMDAPGVWAPHILDDYIRQV-----RKFPLQEQL 574

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +   +++      G+  + A + S +  +  Q
Sbjct: 575 DLKREEMRTAERSGDFLRAAQIASEIIALERQ 606


>gi|254805302|ref|YP_003083523.1| DNA primase [Neisseria meningitidis alpha14]
 gi|304387053|ref|ZP_07369305.1| DNA primase [Neisseria meningitidis ATCC 13091]
 gi|254668844|emb|CBA06897.1| DNA primase [Neisseria meningitidis alpha14]
 gi|304338852|gb|EFM04954.1| DNA primase [Neisseria meningitidis ATCC 13091]
          Length = 590

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 181/608 (29%), Positives = 292/608 (48%), Gaps = 42/608 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  +    
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + ++ R    +       E +  + + G ++ L   K  ++ + ++
Sbjct: 507 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 566

Query: 596 EEIEKQIA 603
           + ++  + 
Sbjct: 567 KSLQSGLN 574


>gi|84496805|ref|ZP_00995659.1| DNA primase [Janibacter sp. HTCC2649]
 gi|84383573|gb|EAP99454.1| DNA primase [Janibacter sp. HTCC2649]
          Length = 651

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 157/664 (23%), Positives = 269/664 (40%), Gaps = 54/664 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I+ +     I +++  +V           G     CPFHDEKTPSF    + G 
Sbjct: 4   RINADDIQSVKERSSIEDVVRDHVTLRPGG----VGSLKGLCPFHDEKTPSFTVRPAVGA 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIR 119
           Y+CF C   GD +SF+  +   +F E+++RLAA  G+ L         E     ++ LI 
Sbjct: 60  YHCFGCGEGGDVISFVQKVEHLTFSETIERLAAKIGMELRYEEGGGPREGGIGKRSRLIE 119

Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              VA +F+  +L      +    ++ +RG +    E F +G+AP     L  HLR+KGF
Sbjct: 120 AHRVAEEFYSAALVDRPDARPARDFIRDRGFNRAIAEQFGMGFAPRGGEDLTRHLREKGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           SE++++ AGL   G  S   YDRFR RL++PIR   G  + FG R L   + +  KYLN+
Sbjct: 180 SEDEMVTAGL--SGRGSRGLYDRFRGRLMWPIRDVTGDTVGFGARRLLDDDRIAAKYLNT 237

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
            ET ++ K   LY    A   +                ++VEGY DV++   +GV   V+
Sbjct: 238 SETPIYKKSMVLYGLDAAKKAIA----------GDRQAVIVEGYTDVMAAQLSGVAGAVA 287

Query: 297 SLGTALTEYQLRLLWKLSP--------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           + GTA     +++L ++          +++  FDGD  G +AA KA           ++ 
Sbjct: 288 TCGTAFGIDHIKILRRIMRDEADGAPAKVIFTFDGDAAGQKAAMKAFGEDQRWA---SQS 344

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
              +   G DP       G  A + L+ +++P+ +   +   +     TP+ R +    +
Sbjct: 345 FVAVAPDGMDPCDLRLAKGGEAVKALVDDAVPMFEFAVRTTMKRFDLETPEGRVQAMQAV 404

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK---------------- 452
              IN I+D  LR  Y +++   L    ++ + E    GR   +                
Sbjct: 405 APIINSIRDSSLRPEYMRSVAGMLGVEVEQVLNEVQRAGRIKAREGADAASGPSGRAADR 464

Query: 453 -NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP-AILQEQYQELADIRY 510
             A   D   P+ +   S+L    L       E  LL  L+ +P     E    +  + +
Sbjct: 465 TPASTDDVPEPNAQEGASALPPPNLRDPVVNNERQLLQALLQYPTRFTTETIDAIPPVAF 524

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
                  ++  + +                + E      ++ L  ++  A L +   +  
Sbjct: 525 TAPAHSAIFDGVRTVAGRAADLSTAGWVAAVSEAA-SLAVRGLLAELSVAPLPT-KVDPT 582

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQI 628
                Q Y ++L +      LSRQ  +    I ++  T + + E        L E+ +  
Sbjct: 583 SGLPPQRYLESLVIGVHDSGLSRQIADETAAIRRLQNTPEPDQEALRARSRRLIELEMNR 642

Query: 629 HQIE 632
            ++ 
Sbjct: 643 ARLR 646


>gi|282916832|ref|ZP_06324590.1| DNA primase [Staphylococcus aureus subsp. aureus D139]
 gi|283770638|ref|ZP_06343530.1| DNA primase [Staphylococcus aureus subsp. aureus H19]
 gi|282319319|gb|EFB49671.1| DNA primase [Staphylococcus aureus subsp. aureus D139]
 gi|283460785|gb|EFC07875.1| DNA primase [Staphylococcus aureus subsp. aureus H19]
 gi|298694844|gb|ADI98066.1| DNA primase [Staphylococcus aureus subsp. aureus ED133]
          Length = 599

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 151/632 (23%), Positives = 264/632 (41%), Gaps = 38/632 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +         +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              L+      +        ++   E          N    D+ G         + +   
Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +    E A L  L+         Y+ +    + N   + ++  L   + E   +   +
Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             Q +      E L  L++   +        +    +    Y   +    +        E
Sbjct: 520 AVQYVNSNELRETLISLEQYSLN--------DEPYENEIDDYVNVINENGQET-----IE 566

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +  ++ + T  G+ E     +  +   + + 
Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598


>gi|20808175|ref|NP_623346.1| DNA primase [Thermoanaerobacter tengcongensis MB4]
 gi|20516767|gb|AAM24950.1| DNA primase (bacterial type) [Thermoanaerobacter tengcongensis MB4]
          Length = 600

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 176/634 (27%), Positives = 293/634 (46%), Gaps = 44/634 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y R+ I+ ++    I ++I  YV+  R        ++   CPFH EKTPSF  + +K 
Sbjct: 1   MAYTRESIEKVIEANDIVDVISDYVELKRAGK-----EFRGLCPFHREKTPSFMVSPTKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDLI 118
            Y+CF C+  G+ ++F+  +   SF E+++ LA  AG+PL  VD   E+ ++ +   ++ 
Sbjct: 56  VYHCFGCNASGNVVTFIMDIENLSFKEAIEFLAERAGIPLEEVDLSEEEAKRKKIIEEIY 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           R+ ++A  FFH  L +    +   YL  RG+ S  I+ F +GYAP S   L   L+ KG+
Sbjct: 116 RVNKIAALFFHRKLFSEEGVKALEYLKSRGLSSTTIKKFGIGYAP-SNDDLLNFLKGKGY 174

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            E  + +AGL++    S   YDRF++R++FPI   RG V+ FGGR L      KYLN+PE
Sbjct: 175 KENFLSKAGLVV--YKSGKYYDRFKDRVMFPIIDVRGNVVGFGGRAL-DDSLPKYLNTPE 231

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F KGK L+    A                    I+VEGYMD +SL QAG+   V+SL
Sbjct: 232 TEIFKKGKTLFAINFAKK------------TQDDKFIIVEGYMDAISLHQAGIDCAVASL 279

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE Q RL+ +    +V+ +D D+ G+ A  + +D+          +  + +  G+D
Sbjct: 280 GTALTEDQARLIKRYKKNVVIAYDADEAGVNATLRGLDI---LEKLNINIKVLSIPEGKD 336

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AF +L+  +  L++   K   +   F   ++R      + + I  I D+
Sbjct: 337 PDEFIKKEGSEAFRRLVENAESLIEFKSKIFKKGFDFEKVEDRIIYVKKIASEIAKISDE 396

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y  A     Q       TE   + +   +  +    +  + R    S  K     
Sbjct: 397 VKREVYISAAAKTAQIPENAVRTEVDRFVKRETEKKQKFMYRTGNIRHNIYSSSKISP-- 454

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E  L+  L++   +  +    +     ++++L+ ++  + S     K    ++I 
Sbjct: 455 -----EKYLIALLLHDNNLYHKIKGVIKPDMLEDSKLKPIFEEIVSSLEGGKQVQIKDIV 509

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E     L+   +  V+              D+ Q     L        L+R++EEI
Sbjct: 510 YLIQEE--DNLISDFNDIVKALF--------EAEDLSQMVDDILQKIL-LNNLARKREEI 558

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            K+I      G+ EK   L+  L     ++ +I+
Sbjct: 559 RKEILNAHLLGDVEKERELLIKLQNCEKEMLKIK 592


>gi|294085799|ref|YP_003552559.1| DNA primase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292665374|gb|ADE40475.1| DNA primase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 560

 Score =  359 bits (922), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 178/584 (30%), Positives = 274/584 (46%), Gaps = 40/584 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P +FI+DL   +P+S++IG+ V   R+        +   CPFH EKTPSF   D  G
Sbjct: 1   MAVPPEFIEDLRQRVPLSDIIGKRVKLVRKGR-----RFSGLCPFHSEKTPSFSVVDDDG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF C V GD +SFL  + G  F+E+V+RLA +AG+ +P+  P+  K  + +   + +
Sbjct: 56  FYHCFGCGVHGDAISFLREIDGLEFMEAVERLADMAGMAMPIGAPQDPKVTQQRKAALDI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E    FF  +L     K    YL  R +D+H I+ ++LGYAP  R  LR  L  KGFS+
Sbjct: 116 LETTATFFRAALDREDGKDAARYLLNRNLDAHIIQTYRLGYAP--RGGLRAALSAKGFSD 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             ++ AG+L   D   + YD FR+R++FPI + +G+VIAFG R L      KYLNS E  
Sbjct: 174 ADMLAAGVLRKSDRDGSLYDYFRDRVMFPIENRQGKVIAFGARAL-GDAQPKYLNSGEGP 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
            F K   LY +  A   L++ +           +++ EGYMDV+++ ++GV   V+ LGT
Sbjct: 233 TFSKKAVLYGWVQAREGLRRQL----------PLVIAEGYMDVIAIHKSGVAAAVAPLGT 282

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q+ L+WKL    VLCFDGD  G +A  +A++  L  L PG    F  L  G+DPD
Sbjct: 283 ALTPEQIVLVWKLHNEPVLCFDGDAAGQKAQMRALERFLPLLEPGKTARFATLPAGKDPD 342

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G   F+ +I  +  LVD +W     +     P++RA+    +++ I +I + ++
Sbjct: 343 DVLREAGYEGFKNIIATARSLVDTMWDGIMADHDVRQPEQRAQFWQAIRSQIRNIGNNQV 402

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  +S  I +R+  +     T+  G           R   G   R      +        
Sbjct: 403 RSAFSDEIENRIAAM----RTQMRGGTMPMAARTARRPSTGMINRHKALLALLLAHPALI 458

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           S                    ++ L+ I   +  L+ +        +         ++  
Sbjct: 459 SGA------------------FETLSMIDSGDERLEMIKKAAIDALISDPDLDAAALNYH 500

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           L    F + L  L      A L       N         + +AL
Sbjct: 501 LQGLNFTDELADLTGADMKARLPFDPATMNSDTAEAHLGELVAL 544


>gi|239940962|ref|ZP_04692899.1| DNA primase [Streptomyces roseosporus NRRL 15998]
 gi|239987440|ref|ZP_04708104.1| DNA primase [Streptomyces roseosporus NRRL 11379]
 gi|291444399|ref|ZP_06583789.1| DNA primase [Streptomyces roseosporus NRRL 15998]
 gi|291347346|gb|EFE74250.1| DNA primase [Streptomyces roseosporus NRRL 15998]
          Length = 643

 Score =  359 bits (922), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 148/668 (22%), Positives = 266/668 (39%), Gaps = 62/668 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  + SKG 
Sbjct: 4   RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD ++F+  +   SF E+V+RLAA AG+ L   +       +   +  LI 
Sbjct: 60  FHCFGCQEGGDTIAFVMKIDHLSFSETVERLAAKAGITLRYEEGGYNPSHQRGERIRLIE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             + A +F+  +L++   +    +L ERG D  A   F++GY+P     L  +LR KGFS
Sbjct: 120 AHQAAAEFYVRALESPEAEIGRKFLAERGFDQDAATHFRVGYSPAGWDHLTRYLRGKGFS 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           ++++I +GL    D      DRFR RL++PI  + G ++ FG R L   ++  KYLN+PE
Sbjct: 180 DKELITSGL--SQDGRRGPIDRFRGRLMWPISDTAGDIVGFGARKLRDDDNGPKYLNTPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K + LY    A   + K+ R           ++VEGY DV++   AGV   +++ 
Sbjct: 238 TPVYKKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIATC 287

Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           GTA     +++L +L       R++  FDGD  G +AA +A +               + 
Sbjct: 288 GTAFGNDHIKILRRLLMDNGSARVIFTFDGDSAGQKAALRAFEDDQKFAA---ETYIAIA 344

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  A   L+    PL +   ++        TP  RA         + 
Sbjct: 345 PDGMDPCDLRLVKGDDAVRDLVEPRTPLFEFALRQIVGRYDLETPAGRAAALDEAAAVVA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA------------------- 454
            IK   ++   +  +   +  L Q+++         W ++                    
Sbjct: 405 KIKTSSVQREVAVQLAGLVGILDQEFVVHRVAQLARWARDKGGDQGDRGGRGGPQGRGPR 464

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
               Q+         S     L       E  LL   +  PA++   +       +    
Sbjct: 465 GGAPQQTAPAPAPAFSGPALNLRSPAHRTERELLKLALQKPALVSPAFDAYGVDEFTAPP 524

Query: 515 LQKLWSFLFSDFVEQKYFLPE-----EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
              +   +      ++    +      +     +     L+ +L  +V            
Sbjct: 525 YAAVRRCIEEAGGAEQGIADDRAYLGAVLDAAPDNTVRNLVTELAVEVFHGRT------- 577

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
               + + Y     ++ R R + R+  +++  +A++      +  A   + +  +     
Sbjct: 578 ----IDETYAGMHLVHVRLRAVDRRIADVQSSLARLGNHVAPQDLAAAQNEVWVLQQYAQ 633

Query: 630 QIESQEAM 637
            + +  A 
Sbjct: 634 TLRAHGAA 641


>gi|86739989|ref|YP_480389.1| DNA primase [Frankia sp. CcI3]
 gi|86566851|gb|ABD10660.1| DNA primase [Frankia sp. CcI3]
          Length = 629

 Score =  359 bits (922), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 145/647 (22%), Positives = 259/647 (40%), Gaps = 42/647 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 +  +    PI++++ ++V       N    +    CPFHDEK+PSF+ N + G 
Sbjct: 4   RIRDADVALVRERSPIADVVAEHVQLRPAGRN----ELVGLCPFHDEKSPSFYVNAATGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIR 119
           ++CF C   GD  SF+  + G +F E+ +RLA  AGV L         +     +  L+ 
Sbjct: 60  FHCFGCQQGGDVYSFVREIDGLTFREAAERLARRAGVALTYEGGGTTDRTVSSQRQRLLE 119

Query: 120 LIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
               A +F+   L++ A  +    +L  RG D      F++GYAP    +L  HL  + F
Sbjct: 120 THRAAAEFYAEQLESQASARAGWDFLAARGFDLTTAARFEVGYAPTGWDTLTRHLLARRF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES----VKYL 234
           + E+++  GL   G       DRF +RL++PIR   G+V+ FGGR L++ ++     KYL
Sbjct: 180 TGEELVLGGLAKQG-ARGGLIDRFHHRLMWPIRDLAGEVVGFGGRRLAEDDAPNAGPKYL 238

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+P+T LF K   LY    A   + +             +++VEGY DV++   AGV   
Sbjct: 239 NTPDTPLFKKANLLYGADLARRDIARRY----------QVVVVEGYTDVMACHLAGVTTA 288

Query: 295 VSSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           V++ GTA     + ++ +           ++  FDGD  G +AA +A +          +
Sbjct: 289 VATCGTAFGSEHVAVVRRLLMDSDERRGEVIFTFDGDAAGQKAALRAFEHEERFAT---Q 345

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
               +   G DP       G  A   L+   +PLV+   +   +    NT + R      
Sbjct: 346 TFVAVEPSGRDPCELWMSGGDGAVRDLVASRVPLVEFAIRGVLDRYDLNTTEGRLAALDA 405

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
               +N +KD  LR+ Y+  +   L  L ++++       R  +   R   +  P +R  
Sbjct: 406 AAPLVNRLKDAALRHRYAVNLDRWLGFLDERFVVGRVAEHRSRQGGERAGARSAPMRRRG 465

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
                         + E   L   + +P +    +  L    +     + +   +     
Sbjct: 466 A------GADDAAVIVEREALKLAVQYPGLAGPMFDTLGPEMFTVPAHRAVRDLIAEAGG 519

Query: 528 -EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                    E+   + E       ++L R V    +     +    DV   Y        
Sbjct: 520 VCAGLARSGEVTTWVTELAAAASEEELRRFVTALAVERVLCDH---DVDDRYVDEQMSRV 576

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +   ++R+  +++ ++ ++    +AE        L  +    HQ+  
Sbjct: 577 QELHVTRRITDLKSRVQRLNGVTDAEALRRAFGELIALEQHKHQLRE 623


>gi|319410766|emb|CBY91150.1| DNA primase [Neisseria meningitidis WUE 2594]
          Length = 590

 Score =  359 bits (922), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 181/608 (29%), Positives = 293/608 (48%), Gaps = 42/608 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL  + I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK   +     YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLK--FNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQ+I FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQIIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  T+    NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLTDGIHLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  +    
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + ++ R    +       E +  + + G ++ L   K  ++ + ++
Sbjct: 507 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 566

Query: 596 EEIEKQIA 603
           + ++  + 
Sbjct: 567 KSLQSGLN 574


>gi|58583751|ref|YP_202767.1| DNA primase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625564|ref|YP_452936.1| DNA primase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188574976|ref|YP_001911905.1| DNA primase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58428345|gb|AAW77382.1| DNA primase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369504|dbj|BAE70662.1| DNA primase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188519428|gb|ACD57373.1| DNA primase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 582

 Score =  359 bits (922), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 169/631 (26%), Positives = 270/631 (42%), Gaps = 59/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    I  ++G  V   R+       +Y A CPFHDE++ SF  + +K F
Sbjct: 3   RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120
           Y+CF C   G  +SFL       F+++V  LA  AG+ +P    +   +++    +L   
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEIPRETQQRTPQQQDDSRELYSA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E AT FF   L     +R   YLD RG+D+     F++GYAPD   +L++ L       
Sbjct: 118 LEAATRFFQRQL--DGSERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235
             +  AGL    D     YD+FR+R++FPI   RG+VIAFGGR +      +    KYLN
Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LFHKG+ LY  +      QK  R          +I+VEGYMDV+SL Q GV   V
Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T     LL++ +P +  CFDGD+ G +A ++A++ VL  +  G +  F+ L  
Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPD+ +R  G  AF++ + ++ PL    +   +   + +T D +A L    +  +  I
Sbjct: 345 GEDPDTIVRKEGAPAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPMLTQI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +        Q +                      +   + R     +    + SLV+  
Sbjct: 405 PEGAFGDLMKQELSRLTGVGTS---------ASAQQSTPKPRPPARMAAPTQKRSLVRAS 455

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                       +  L+  P++                 +  L   L     ++      
Sbjct: 456 ------------IAILLQRPSLAASLEGVHDFSGLRLPGIDLLME-LLDLVRQRPEISTG 502

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + +   ER     L+ L  Q                         +      +LL ++ 
Sbjct: 503 ALLEHFAERDEQAALQTLAAQELPGD----------EHSWAIELHDVVAQLDKQLLRQRV 552

Query: 596 EEIEKQIAQVTAKGEAEKTA--ILISILHEV 624
           EE++ +  +     + +K     L+  L  +
Sbjct: 553 EELQAK-QRAQGLDDTDKYEMRELLKALAAL 582


>gi|295424883|ref|ZP_06817598.1| DNA primase [Lactobacillus amylolyticus DSM 11664]
 gi|295065449|gb|EFG56342.1| DNA primase [Lactobacillus amylolyticus DSM 11664]
          Length = 602

 Score =  359 bits (922), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 151/632 (23%), Positives = 284/632 (44%), Gaps = 43/632 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P DFI ++  ++ I ++I QYV  +++       DY   CPFH EKTPSF  N+ K F
Sbjct: 4   RIPEDFINEVRNNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNEEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESV+++A  A +P+P    +   +      L+++ 
Sbjct: 59  FKCFGCGKGGNVFKFLMYKDNLTFPESVEQVANFAHIPMPSSYGQTPVQMSP---LLKIH 115

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + AT F+HH L   +  +R   Y  ER +    ++ F++GYAP+S   L  +LR KG+S+
Sbjct: 116 QDATSFYHHVLLTTQAGERGMKYARERELSEELLDHFQIGYAPNSENVLLTYLRGKGYSD 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
           + + ++GL I   +    +DRFR+RL+FP+    G+VI F GR +S+ ++  KY+NSPET
Sbjct: 176 DNLAKSGLFIQSKDG-RLFDRFRDRLMFPLGDESGKVIGFSGRRISQDKTEAKYMNSPET 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K K L++F  A    ++             ++L EGYMDV+S  +AGV + ++S+G
Sbjct: 235 EIFTKSKALFHFSEAKKAARR----------EGHLVLYEGYMDVISAYKAGVHSGIASMG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ +L + S  I++ +DGDDPG+ A  +A  +       G  +  V+L    DP
Sbjct: 285 TSLTDQQVYMLKRTSRNIIVNYDGDDPGVHAEERAAKMF--QQAGGFNLGIVVLPEKLDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG   + + +  +L   D   KR  +  +     ER          I  + +  
Sbjct: 343 DEYVKKYGAEKYLEEVKGALSPTDFFLKRLAKKYNLKNDRERITFLSEAVKQIAQLSNPV 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS-- 477
            +  Y   +  +                R   +  R++ +  P+ R   ++ V+ + +  
Sbjct: 403 EQDLYIDKLAKQQGVSKDSLKINLMRERRRLFRANRNKGRYQPNNRKETTNPVEFEDNQD 462

Query: 478 ---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
               K    +  LL   ++         ++     + +    ++           +    
Sbjct: 463 TVQPKYDSAQTRLLYLFMHSEQARDYILEQ--HFLFPDQGYAQIAELWLKFIQTHEETTI 520

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                 + E+  G ++    R++               +        +    + R ++ Q
Sbjct: 521 NSFLDFIPEQLQGIIVNAEMREM-------------PQNFSGREIDEIISSLKKRDINSQ 567

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
             +++ +I     + + ++   L   + ++  
Sbjct: 568 LNKLKNKIEDAERRNDNQEILNLTQKILQLKR 599


>gi|220932078|ref|YP_002508986.1| DNA primase [Halothermothrix orenii H 168]
 gi|219993388|gb|ACL69991.1| DNA primase [Halothermothrix orenii H 168]
          Length = 599

 Score =  359 bits (922), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 185/608 (30%), Positives = 292/608 (48%), Gaps = 36/608 (5%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
             F+ +L   + I +L+  YVD  +   N     Y   CPFH EKTPSF  N  + F+YC
Sbjct: 6   EKFLDELKGSLDIVDLVSDYVDLKKVGKN-----YVGLCPFHQEKTPSFTVNPERQFFYC 60

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C V GD +SFL  +   +F ESV+ LA  +G+ +P  DP+  ++ + +  L ++  + 
Sbjct: 61  FGCGVGGDVISFLMEIENITFKESVKMLARRSGMEVPGDDPRHRQQLREREKLFKINHLT 120

Query: 125 TDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
             F+H+  L+  +  +   YL +RG     I+ F LGYAPD    L + L  KGF E ++
Sbjct: 121 AKFYHYLLLETDQGLKAINYLKKRGFTKKDIKKFGLGYAPDRWDGLLKFLTGKGFEEGEL 180

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPETILF 242
           ++AGL +   N+   YDRFR+RLIFPI +SRG+V+AFGGR +   E   KYLNSPET +F
Sbjct: 181 VKAGL-VLLSNNNNYYDRFRDRLIFPIFNSRGEVLAFGGRLIDSDESQPKYLNSPETPVF 239

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           +KGKNLY    A + ++K          SS +I++EGY DVL   Q G+ NVV+SLGTAL
Sbjct: 240 NKGKNLYGLNWAKHEMRK----------SSEVIIMEGYTDVLRAHQMGINNVVASLGTAL 289

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q RL+ + S    + +D D  G +A  + +D+       G  V  V L +  DPD +
Sbjct: 290 TSEQARLIARYSNLAYISYDADTAGTKATLRGLDI---LKNAGLNVKVVDLPQDSDPDEY 346

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +R  G   F  L+ E++ LV+   K+  EN   N    + E    L   +  ++D+  R 
Sbjct: 347 LRKKGVDEFYTLLEEAVDLVEFKIKQGLENIDLNNVQGKIEGTRKLVKILATLEDRIERE 406

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            Y Q + D+     +   +E     +  K   KN+  R  K  ++R   +   K    + 
Sbjct: 407 IYIQNVSDKFNLDPEILKSEVEKLIKINKNKDKNSSRRYTKKSNRRYFTNKNNKTNSFRS 466

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  LL   I+ P +      E+    +        +  +     E K  L  +I  
Sbjct: 467 IHFIEEKLLHAFIDFPELRNTIVNEINTDMFSKE-----YQEVAEFLWENKDSLKGDIIN 521

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            +  +     + +L   + +  +     E  IV+ ++       +Y     L ++ +E  
Sbjct: 522 NIESKVLRNKVMELM--INNKTVQPEGVERLIVNFKEE-----NVYNIKVGLYKKLQENN 574

Query: 600 KQIAQVTA 607
             + ++  
Sbjct: 575 LNVNRLNK 582


>gi|297626396|ref|YP_003688159.1| DNA primase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922161|emb|CBL56729.1| DNA primase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 622

 Score =  359 bits (922), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 149/644 (23%), Positives = 250/644 (38%), Gaps = 48/644 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I N++G YV       NA  G     CPFHDEKTPSF    ++G 
Sbjct: 4   RINDEDIALVRERARIDNIVGAYVTL----RNAGGGSLKGLCPFHDEKTPSFQVTPARGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL 120
           +YCF C V GD ++F+  +   +F E+VQ LA   GV L  V D K      ++  ++  
Sbjct: 60  FYCFGCGVGGDVITFMQKIDNLTFTEAVQTLADKVGVQLRIVDDGKPSLPAGLRVRIMEA 119

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            ++A +F+  +L           LD RG D  A E F +GYAP    +L  HL   GF +
Sbjct: 120 NKLAAEFYSKALAAPEALEARRMLDGRGFDRPAAEHFGVGYAPRDGRALHRHLNHAGFRD 179

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           ++++ AGL+ +        D F+ R+++PI+ S   V+ FG R L   +    KY+N+PE
Sbjct: 180 DELVSAGLIREHGGW----DYFQGRVMWPIKDSGASVLGFGARHLYDDDRLPAKYINTPE 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K   LY    A   + K +            +++EGY DV+S   AGV   V+  
Sbjct: 236 TPVYKKSHVLYGLDLARQNIGKKL----------QAVVMEGYTDVMSAHLAGVDTAVAVC 285

Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA      RLL +L          IV  FDGD  G  AA K   L         +    
Sbjct: 286 GTAFGPDHARLLQRLMGNNDSTQGEIVFTFDGDKAGQAAALKVYKLDRSFTT---QTYVA 342

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP       G  A  +L+    PL   +          +  D R          
Sbjct: 343 VEPNGLDPCDLRMAKGDAAVRELVGRREPLYRYVMAHTVAGYDLDRADGRVAAVRAAAGM 402

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--- 468
           +  I+D  L   Y + +   +     +                R       S+       
Sbjct: 403 LASIRDANLVGEYVRDLSRLVGMDVDEVRRILKQARNQGAGGRREPPVPVVSEDADPVEP 462

Query: 469 -SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             S      + +    E   L  ++ HP +    +  ++   + +   + L+  + S   
Sbjct: 463 GDSPGWPDRNDRNLDVERGTLKLMLQHPTLFDTAWNGVSTSDFTHPAFRALFGAILS--- 519

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
               ++P      L +    EL++QL+         +   E  +    +GY  A     +
Sbjct: 520 --TPYVPTGWTDSLQQATGDELVRQLE--------IALLVEPILRSPDEGYASAYTSRLK 569

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
               +R  ++++ ++ +     + +    +   L ++     ++
Sbjct: 570 LLTTARAIDDLKSRLQRTNPLQDKDAYDAMFMKLLDLETSRKKL 613


>gi|57651955|ref|YP_186459.1| DNA primase [Staphylococcus aureus subsp. aureus COL]
 gi|87161696|ref|YP_494217.1| DNA primase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195370|ref|YP_500174.1| DNA primase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221677|ref|YP_001332499.1| DNA primase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509791|ref|YP_001575450.1| DNA primase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221140018|ref|ZP_03564511.1| DNA primase [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|282920111|ref|ZP_06327836.1| DNA primase [Staphylococcus aureus A9765]
 gi|284024621|ref|ZP_06379019.1| DNA primase [Staphylococcus aureus subsp. aureus 132]
 gi|294848593|ref|ZP_06789339.1| DNA primase [Staphylococcus aureus A9754]
 gi|304380849|ref|ZP_07363509.1| DNA primase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|78099122|sp|Q5HFJ8|PRIM_STAAC RecName: Full=DNA primase
 gi|57286141|gb|AAW38235.1| DNA primase [Staphylococcus aureus subsp. aureus COL]
 gi|87127670|gb|ABD22184.1| DNA primase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202928|gb|ABD30738.1| DNA primase, putative [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150374477|dbj|BAF67737.1| DNA primase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368600|gb|ABX29571.1| DNA primase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|269941052|emb|CBI49436.1| DNA primase [Staphylococcus aureus subsp. aureus TW20]
 gi|282594459|gb|EFB99444.1| DNA primase [Staphylococcus aureus A9765]
 gi|294824619|gb|EFG41042.1| DNA primase [Staphylococcus aureus A9754]
 gi|302751393|gb|ADL65570.1| DNA primase [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340576|gb|EFM06510.1| DNA primase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315198743|gb|EFU29071.1| DNA primase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320144090|gb|EFW35859.1| DNA primase [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329314238|gb|AEB88651.1| DNA primase [Staphylococcus aureus subsp. aureus T0131]
 gi|329728370|gb|EGG64807.1| DNA primase [Staphylococcus aureus subsp. aureus 21189]
          Length = 599

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 151/632 (23%), Positives = 263/632 (41%), Gaps = 38/632 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +         +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQN---LLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              L+      +        ++   E          N    D+ G         + +   
Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +    E A L  L+         Y+ +    + N   + ++  L   + E   +   +
Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             Q +      E L  L++            +    +    Y   +    +        E
Sbjct: 520 AVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET-----IE 566

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +  ++ + T  G+ E     +  +   + + 
Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598


>gi|307261954|ref|ZP_07543612.1| DNA primase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306868365|gb|EFN00184.1| DNA primase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 580

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 175/615 (28%), Positives = 284/615 (46%), Gaps = 50/615 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DL+    I  LI   V   +        DY ACCPFH EK+PSF  + SK F
Sbjct: 4   SIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQSKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       F E+++ LAA+ G+ +P       D K +   K + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVMARDGKPQASYKTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L+E  + F+  +L      +   YL  RG+    I  F++G+A +S  S+       
Sbjct: 119 LYELLEAISRFYQQNLTQDIPSQS--YLQSRGLSPEIIARFEIGFAYNSMDSVLRKFGT- 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              E + +    +I  ++S   YD+FRNR++FPIR  RG+VIAFGGR +   E  KYLNS
Sbjct: 176 NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+  +HKG  LY  F AL           +  + + +++VEGYMDV++L Q GV NVV+
Sbjct: 235 PESATYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGTA T  Q++ +++++ +++ C+DGD  G  AA++A +  L +L  G ++ F+ L  G
Sbjct: 285 SLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDSF+R  GK  FE  +  ++ L D L+         ++ + +++L       IN I 
Sbjct: 345 EDPDSFVRAQGKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLINRIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR Y    +  +L  L    +           +    +  +     +          
Sbjct: 405 GEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVQTPQIKRTPM---------- 454

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     L+  L+ +P +++      A    +    + L   L     ++       
Sbjct: 455 --------RLLIALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVSMGA 505

Query: 537 IHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRL 590
           + +   ++      ELL   +  V    + +   E        + +   + L    R   
Sbjct: 506 LLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDRSLG 565

Query: 591 LS-RQKEEIEKQIAQ 604
           LS  +K+E+   IAQ
Sbjct: 566 LSAEEKQELVMLIAQ 580


>gi|283470840|emb|CAQ50051.1| DNA primase [Staphylococcus aureus subsp. aureus ST398]
          Length = 599

 Score =  359 bits (921), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 151/632 (23%), Positives = 263/632 (41%), Gaps = 38/632 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +         +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++               L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIARNDLSYERYLKELSHDISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              L+      +        ++   E          N    D+ G         + +   
Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQ--FNQAPVNYYPEDEYGGYIEPEPIGMAQFDN 459

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +    E A L  L+         Y+ +    + N   + ++  L   + E   +   +
Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             Q +      E L  L++   +        +    +    Y   +    +        E
Sbjct: 520 AVQYVNSNELRETLISLEQYSLN--------DEPYENEIDDYVNVINENGQET-----IE 566

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +  ++ + T  G+ E     +  +   + + 
Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598


>gi|241663619|ref|YP_002981979.1| DNA primase [Ralstonia pickettii 12D]
 gi|240865646|gb|ACS63307.1| DNA primase [Ralstonia pickettii 12D]
          Length = 603

 Score =  359 bits (921), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 176/643 (27%), Positives = 286/643 (44%), Gaps = 59/643 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTD--L 117
           +CF C   G  + FL    G S++E+++ LA   G+ +P      P   + E+      L
Sbjct: 57  HCFGCGAHGSAIGFLMEFSGQSYVEAIKDLAQSVGMVVPEERGGLPPAARAEQQAKTVAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR--Q 175
             ++  A D +   L++        YL  RG+       F LGYAPD   SL       +
Sbjct: 117 GDVMARACDHYRKQLRS--APNAIQYLKGRGLTGEIAAHFGLGYAPDDWQSLEAVFGPYR 174

Query: 176 KGFSEEKIIEAGLLIDGDNS-----ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
           +  +   +IEAGL+I+ + +        YDRFR+R++FPIR+++G VI FGGR L +GE 
Sbjct: 175 EDATAAPLIEAGLVIESEKTGADGSHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF KG  LY  F A N ++             ++++VEGYMDV++L Q G
Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFDYVLVVEGYMDVVALAQLG 283

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
             N V++LGTA T   ++ L +    ++  FDGD  G RAA +A++  L H      + F
Sbjct: 284 FANAVATLGTACTPVHVQKLLRQVDTVIFSFDGDSAGRRAARRALEACLPHATDNKTIKF 343

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           + L    DPDSF+R  G  AF + +  ++PL   L +  TE+     P+ RA  +   K 
Sbjct: 344 LFLPSEHDPDSFVREEGTEAFAREVRNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKP 403

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +    LR    + + +         I    G      +  R   ++    R   ++
Sbjct: 404 LLSAMPAGGLRLQIVRGLAEMTG-TTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTA 462

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFV 527
           L            E  +L  L+ +PA+        A  +    +L   + L   L     
Sbjct: 463 L------------EQKVLRLLMRYPALAAR-LDTDARAQLTAPQLPQGEVLAGLLAECDA 509

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                      +RL +  + E    L   V          +  +      +  A+     
Sbjct: 510 AGPEVHFGAFIERLGQTPYAEAFAGLRTAV-------LQDDIELEPAISEFDTAVQKML- 561

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629
              L R+ E +++++ +    G+ +K    +  L  E+  +  
Sbjct: 562 AEPLKRELEMLQRKM-EAGHAGDEDK--ERMRWLVGEISRRRQ 601


>gi|308389680|gb|ADO32000.1| DNA primase [Neisseria meningitidis alpha710]
          Length = 590

 Score =  359 bits (921), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 181/608 (29%), Positives = 291/608 (47%), Gaps = 42/608 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK   +     YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLK--FNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     +++  R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEVGR----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  +    
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + ++ R    +       E +  + + G ++ L   K  ++ + ++
Sbjct: 507 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 566

Query: 596 EEIEKQIA 603
           + ++  + 
Sbjct: 567 KSLQSGLN 574


>gi|258423990|ref|ZP_05686872.1| DNA primase [Staphylococcus aureus A9635]
 gi|257845611|gb|EEV69643.1| DNA primase [Staphylococcus aureus A9635]
          Length = 599

 Score =  359 bits (921), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 151/632 (23%), Positives = 264/632 (41%), Gaps = 38/632 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +         +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEKALTYLLERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISFMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              L+      +        ++   E          N    D+ G         + +   
Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +    E A L  L+         Y+ +    + N   + ++  L   + E   +   +
Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             Q +      E L  L++   +        +    +    Y   +    +        E
Sbjct: 520 AVQYVNSNELRETLISLEQYSLN--------DEPYENEIDDYVNVINENGQET-----IE 566

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +  ++ + T  G+ E     +  +   + + 
Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598


>gi|218768517|ref|YP_002343029.1| DNA primase [Neisseria meningitidis Z2491]
 gi|9910820|sp|P57028|PRIM_NEIMA RecName: Full=DNA primase
 gi|121052525|emb|CAM08864.1| DNA primase [Neisseria meningitidis Z2491]
          Length = 590

 Score =  359 bits (921), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 182/601 (30%), Positives = 287/601 (47%), Gaps = 44/601 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVHGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLTQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  +    
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSR 593
           ++ + +    + E + ++ R    +       E +  + + G ++ L   K  +   L +
Sbjct: 507 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIEALKQ 566

Query: 594 Q 594
           +
Sbjct: 567 K 567


>gi|251793983|ref|YP_003008715.1| DNA primase [Aggregatibacter aphrophilus NJ8700]
 gi|247535382|gb|ACS98628.1| DNA primase [Aggregatibacter aphrophilus NJ8700]
          Length = 598

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 163/598 (27%), Positives = 276/598 (46%), Gaps = 45/598 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI D+L  + I +LI   V   +        DY ACCPFH EKTPSF  +D K FY
Sbjct: 5   IPRTFIDDILTKVNIVDLINSRVKLKKAGR-----DYQACCPFHHEKTPSFTVSDKKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------DPKIEKKEKIQTD 116
           +CF C   G+ +SFL       F+E+V+ LA   G+ +P        +   +   + + +
Sbjct: 60  HCFGCGAHGNAISFLMEYDKLEFVEAVEELAGFLGLEIPYEKRPHFNEGGKQVGYQTKRN 119

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L++    F+   L    +     YL +RG+ +  IE F++GY P++  ++     + 
Sbjct: 120 LYELMQEIAKFYQQQL--PLNIPAQSYLQQRGLSAEIIERFQIGYVPNAMDTVYRQFGKT 177

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+ + G+L   D     YDRFRNR++FPIR  RG+ +AFGGR L   E  KYLNS
Sbjct: 178 REEQQKLFDLGMLSRNDRGNI-YDRFRNRIMFPIRDRRGRTVAFGGRVL-TDEKPKYLNS 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET+ +HKG  LY  F AL             +S   +++VEGYMDV++L Q GV   V+
Sbjct: 236 PETVTYHKGSELYGLFEALQA----------DDSPQKLLVVEGYMDVVALAQFGVDYAVA 285

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T  Q++LL++ + +++ C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 286 SLGTSTTSEQIQLLFRSTEQVICCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 345

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD+FIR +GK  FE+ +  +  L + L+   T    F++ + + +L       I  I 
Sbjct: 346 EDPDTFIRQFGKEGFEEYLNNAQSLSEFLFAHLTPQVDFSSKEGKNKLAALAIPLIKQIP 405

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              LR      +  +L  L    +       +  +     +  +     +          
Sbjct: 406 GDVLRLDLRNTLAKKLGILDSTQLESLIPNQQKTENTPTAQPIQFKRTPM---------- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     L+  L+ +P +++      +    +      L++ + +   E+      +
Sbjct: 456 --------RVLIALLLQNPELVKFVPDLESFRSLNEPGYD-LFAEMTALCREKVGISSGQ 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           + +   +      L++L              +     +R  Y Q +     + +   +
Sbjct: 507 LLEHWRDTPQQNTLEKLATW-NHLVEEDKIEDTFRETLRYFYLQIIDKRINWLIAKDR 563


>gi|256823390|ref|YP_003147353.1| DNA primase [Kangiella koreensis DSM 16069]
 gi|256796929|gb|ACV27585.1| DNA primase [Kangiella koreensis DSM 16069]
          Length = 592

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 163/609 (26%), Positives = 268/609 (44%), Gaps = 41/609 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI +LL  + I +LI   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 4   IPQHFIHELLARVDIVDLIDSRVPLKKTGAN-----YKACCPFHGEKTPSFTVSQDKQFY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C + G+ + FL       F ++V+ LAA+ G+ +P  +    K  K+ T L  L+E
Sbjct: 59  HCFGCGLHGNAIGFLMEYDRLEFPDAVEELAAMMGMEVPREETVSNKP-KVDTSLYDLME 117

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL-RQKGFSEE 181
              +++   LKN   K    YL  RG+     + F +GY P    +L     + +   + 
Sbjct: 118 KVANYYQKQLKNN--KAAIDYLKSRGLSGEIAKQFAIGYVPGEWRNLETVFPKLQQDKKL 175

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           +       +      + YDRFR+R++FPI+  RG+VIAFGGR + +GE  KYLNSPET +
Sbjct: 176 QQQLVDCGMLIRKDKSLYDRFRDRIMFPIKDKRGRVIAFGGRVMGQGEP-KYLNSPETPI 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHK   LY  + A    +K  R          +++VEGYMDV++L Q  +   V++LGTA
Sbjct: 235 FHKSNELYGLYQARQANRKLSR----------LLIVEGYMDVVALAQFDINYAVATLGTA 284

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T   L+ L++ +  +VLCFDGD  G  AA +A++  L  +  G  +  + L  GEDPDS
Sbjct: 285 TTSSHLQQLFRAARELVLCFDGDRAGRDAALRALEHGLSQMREGREIRLMFLPDGEDPDS 344

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +R  GK  FE++I E+ PL + + +  +      +   R +L    K  ++ I D    
Sbjct: 345 MVRKVGKEQFEQMIGEATPLFEFILEHLSSQVDLGSVSGRGQLVHLAKPYLDKITDPIYH 404

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
            ++S A+ ++      K                + +  + P +   QS      L     
Sbjct: 405 EFFSSALAEKANLSESKLAAIIEA-------PTQPQHPRKPEKSTPQSPKANKTL----- 452

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                 +  L+  P++              +   + L   L     +        + +  
Sbjct: 453 ---QLAITLLLQQPSLALAINNYGWLQTLPDKGSKLLHQ-LLEIIHKTPKINTSMLLEHW 508

Query: 542 CER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            +     + L  L    R+  +          +++    + L   ++ R+   Q +  E+
Sbjct: 509 RDNTKLYDRLASLAMSEREERIQGN----EQQELQDCINRLLLHARKIRVDYLQHKAAEQ 564

Query: 601 QIAQVTAKG 609
            +       
Sbjct: 565 GLTNQEKSE 573


>gi|320140553|gb|EFW32407.1| DNA primase [Staphylococcus aureus subsp. aureus MRSA131]
          Length = 599

 Score =  359 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 151/632 (23%), Positives = 263/632 (41%), Gaps = 38/632 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +         +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFVGSEATLKTGQN---LLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              L+      +        ++   E          N    D+ G         + +   
Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +    E A L  L+         Y+ +    + N   + ++  L   + E   +   +
Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             Q +      E L  L++            +    +    Y   +    +        E
Sbjct: 520 AVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET-----IE 566

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +  ++ + T  G+ E     +  +   + + 
Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598


>gi|300310202|ref|YP_003774294.1| DNA primase [Herbaspirillum seropedicae SmR1]
 gi|300072987|gb|ADJ62386.1| DNA primase protein [Herbaspirillum seropedicae SmR1]
          Length = 598

 Score =  359 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 182/638 (28%), Positives = 292/638 (45%), Gaps = 62/638 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI+DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPQSFIQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTD--L 117
           +CF C   G  +SFL    G  F+E+V+ LA   G+ +P  +   P  +++EK      L
Sbjct: 57  HCFGCGAHGTAISFLIEYSGMGFVEAVKDLAQNVGMVVPEREDSIPLAQRQEKQAKSMAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             ++  A DF+ H L++   +    YL  RG+       F LGY+PD   SLR+      
Sbjct: 117 SDVMTRANDFYRHQLRS--AQPAIAYLKGRGLTGEIAARFGLGYSPDEWDSLRQVF--PD 172

Query: 178 FSEEKIIEAGLLIDGDN----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
           +  E ++E+GL+ID           YDRFR R++FPIR+++GQVI FGGR +  GE  KY
Sbjct: 173 YDNEALVESGLVIDKSEEGGAHRKRYDRFRGRIMFPIRNTKGQVIGFGGRVMDGGEP-KY 231

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET LF KG  LY  F A   ++           + + ++ EGYMDV++L Q G   
Sbjct: 232 LNSPETPLFQKGSELYGLFEARQAIR----------EAGYALVTEGYMDVVALAQLGFPQ 281

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V++LGTA T   ++ L + + +++  FDGD+ G RAA +A++  L H      + F+ L
Sbjct: 282 AVATLGTACTPIHVQKLVRQTDQVIFSFDGDNAGRRAARRALEACLPHASDNKTIKFLFL 341

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            +  DPDS++R  G  AFE+ I E+LPL   L +         TP+ RA  +   K  + 
Sbjct: 342 PKEHDPDSYVREMGAPAFEEQIREALPLSQFLLREIIGENDLRTPEGRAHAQFAAKPLLQ 401

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +    LR    +++        Q    E        K  AR R     S+R     L  
Sbjct: 402 ALPASALRLQIVRSVAQ----ATQSTPAELEVLFELEKPVARVRAAPARSKRTAPVGL-- 455

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVE-QKY 531
                     E  ++  L+ HP +  +     L  I     +  ++ + L        + 
Sbjct: 456 ----------ERQIMRLLVAHPQLAADLDAGALEAIARIAPDQAEMLTHLVGVAQGMGEQ 505

Query: 532 FLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                + + L E    F  ++ ++           A +E+    VR     A+    R R
Sbjct: 506 ANFAALVEHLREGGPEFDSMIAEIA----------AESESEFDVVRAEMGGAIR-QARIR 554

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            L  + + +    + +  + +  +   L+     +  Q
Sbjct: 555 ALDEEMQMLVT--SNLRTEEDRNRYRELMQRKEWLKRQ 590


>gi|329733241|gb|EGG69578.1| DNA primase [Staphylococcus aureus subsp. aureus 21193]
          Length = 599

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 151/632 (23%), Positives = 263/632 (41%), Gaps = 38/632 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +         +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQN---LLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              L+      +        ++   E          N    D+ G         + +   
Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +    E A L  L+         Y+ +    + N   + ++  L   + E   +   +
Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             Q +      E L  L++            +    +    Y   +    +        E
Sbjct: 520 AVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET-----IE 566

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +  ++ + T  G+ E     +  +   + + 
Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598


>gi|258450609|ref|ZP_05698671.1| DNA primase [Staphylococcus aureus A5948]
 gi|257861767|gb|EEV84566.1| DNA primase [Staphylococcus aureus A5948]
          Length = 599

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 151/632 (23%), Positives = 263/632 (41%), Gaps = 38/632 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +         +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQN---LLQQGLNVFIIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              L+      +        ++   E          N    D+ G         + +   
Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +    E A L  L+         Y+ +    + N   + ++  L   + E   +   +
Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             Q +      E L  L++            +    +    Y   +    +        E
Sbjct: 520 AVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET-----IE 566

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +  ++ + T  G+ E     +  +   + + 
Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598


>gi|319785805|ref|YP_004145280.1| DNA primase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464317|gb|ADV26049.1| DNA primase [Pseudoxanthomonas suwonensis 11-1]
          Length = 577

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 175/623 (28%), Positives = 279/623 (44%), Gaps = 53/623 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI DLL    I  ++G  V   R+       +Y A CPFHDE+TPSF+ + +K F
Sbjct: 3   RLPDAFIDDLLARSDIVEIVGSRVPLKRKGR-----EYTAPCPFHDERTPSFYVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   G  +SFL       F+++V+ LA  AG+ LP       +   ++      +
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVEELARRAGMELPKDTRAGPQDNDLRDQ-YAAL 116

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E A   F   L  +  +R   YLD RG+D+     F +GYAPD   +L++ L       +
Sbjct: 117 EAAARLFQRHLAES--QRARDYLDSRGVDADTRARFAIGYAPDGYSTLKDTLGTDERRLK 174

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +   G+L   +     YD+FR+R++FPI   RG+VIAFGGR L K  S KYLNSPET L
Sbjct: 175 LLERTGMLSRNERGH-VYDKFRDRVMFPIHDRRGRVIAFGGRVLDKDASPKYLNSPETPL 233

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHKG+ LY  + A    QK  R          +++VEGYMDV++L Q GV   V++LGTA
Sbjct: 234 FHKGRELYGLWQAKQANQKLER----------LVVVEGYMDVVTLFQFGVTQGVATLGTA 283

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T     LL++ +P +  CFDGD  G RAA++A++ VL  +  G +  F+ L  GEDPD+
Sbjct: 284 TTADHAELLFRNAPDVYFCFDGDAAGRRAAWRAVESVLPRMKDGRQAFFLFLPDGEDPDT 343

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +R  G T F+  + ++ PL    +     + + NT D RA L    +  +  + D    
Sbjct: 344 IVRKEGATGFDARLAQATPLSQFFFDELGRDTNRNTLDGRARLAERARPLLAQLPDGAFA 403

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               Q +             +                Q+ PS+R+   +  +  +     
Sbjct: 404 DLMRQEL-------------QRQTGVGAAAPATAPEPQRAPSRRVGAPAQKRSLV----- 445

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
               +++  L+  P++  +              +  L   L     ++       + +  
Sbjct: 446 ---RSMIALLLQQPSLGLQLQPPYPFAELRLPGM-PLLLELLDVVHQRPEISTGALLEHF 501

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +   GE L++L  Q                +      Q  A     + L ++ +E++++
Sbjct: 502 ADHEQGEALRKLAAQSLPGD----------ENSWAHELQDAAAQLEKQTLQQRIDELQQK 551

Query: 602 IAQVTAKGEAEKTAILISILHEV 624
             +     E +K   L  +L  +
Sbjct: 552 -QRSQGLDETDKY-ELRMLLQAL 572


>gi|226360349|ref|YP_002778127.1| DNA primase [Rhodococcus opacus B4]
 gi|226238834|dbj|BAH49182.1| DNA primase [Rhodococcus opacus B4]
          Length = 644

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 134/651 (20%), Positives = 239/651 (36%), Gaps = 40/651 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   +  +     I +++G+YV   R             CPFHDEK+PSFH   + G 
Sbjct: 4   RIPDRDVAAIRERTRIEDIVGEYVSLKRAG----GDSMKGLCPFHDEKSPSFHVRPNHGH 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD  SFL  +   SF+E+V++LA      +         +     +  L+ 
Sbjct: 60  FHCFGCGEGGDVYSFLQKIDHISFVEAVEQLADRLNYTISYEGGGTSVQRDRGTRARLVA 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A +F+   L+    +    YL ER  D+ A + F  GYAPD    L +HL  KGF 
Sbjct: 120 ANAAAQEFYSARLQEPDAQAARDYLTERNFDAAAAQQFGCGYAPDGWDVLTKHLLGKGFD 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            +++  AGL           DRF  RL++PIR+  G VI FG R L   +++  KY+N+P
Sbjct: 180 VKELEAAGLSK--AGRRGHIDRFHRRLLWPIRNLSGDVIGFGARKLFDDDTMPGKYVNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K + L+    A   + K              ++VEGY DV+++  AGV+  V++
Sbjct: 238 ETMLYKKSQVLFGLDLAKREIAK----------GHQAVVVEGYTDVMAMHLAGVKTAVAA 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV----NFVLL 353
            GTA  E  L +L +L                         +       ++       + 
Sbjct: 288 CGTAFGEDHLSMLRRLLMDDSYFRGEIIYTFDGDAAGQAAAMKAFEGDQKMAGQTFVAVA 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP    +  G  A   L+    P+ + + K         T + R E        + 
Sbjct: 348 PEGMDPCELRQKSGDAAVRDLVARRTPMFEFVVKSILTEHDLETAEGRVEALRRTVPVVA 407

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS---- 469
            IK+  LR  Y+  +   +       + +        + + R      P ++  +     
Sbjct: 408 QIKEATLRDSYAVQLSGWVGWDDIAAVRQRVRDEARKRASTRGSVSAPPKKKAARGDNKD 467

Query: 470 ------SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                  L + + +      +   L   + +PAI    +  L    + +     +   + 
Sbjct: 468 APQLPVGLSRPRPNDPTLWAQREALKGALQYPAIAGTVFDSLPVETFTHPTYVVIRESMI 527

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           +           E    +           L  ++    L          D    Y   + 
Sbjct: 528 AAGGASAGLGGGEWVDAVGRGVEDVTAASLVSELAVEPLP------AEEDTVPRYISGVI 581

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              +   +  Q  E++ ++ +++    +++   L+  L  +      +  Q
Sbjct: 582 ARLQEVWVGEQVAELKSKLQRISPATASDEFHSLLGDLVALEQYRRSLLDQ 632


>gi|225412270|ref|ZP_03761459.1| hypothetical protein CLOSTASPAR_05492 [Clostridium asparagiforme
           DSM 15981]
 gi|225042188|gb|EEG52434.1| hypothetical protein CLOSTASPAR_05492 [Clostridium asparagiforme
           DSM 15981]
          Length = 640

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 148/663 (22%), Positives = 267/663 (40%), Gaps = 76/663 (11%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP + I+++ +   I ++I  YV   ++        Y+  CPFH+EK+PSF  +  K 
Sbjct: 1   MYYPDEVIEEVRMKNDIVDVISGYVKLQKKGA-----SYFGLCPFHNEKSPSFSVSPGKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+ ++FL      +F E++Q LA  AGV LP      +  ++   +  L+
Sbjct: 56  MYYCFGCGAGGNVITFLMEYENYTFPEALQSLADRAGVNLPKMEYSKEAREQADFKARLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              ++A ++F++ LK  + +  + Y  D+RG+    I  F LGYA  +   L  +L++KG
Sbjct: 116 EANKLAANYFYYQLKQPQGQLGYQYLHDKRGLKDETIRHFGLGYANKTSDDLYRYLKEKG 175

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           + +  + E GL+   +      D+F NR++FPI     +VI FGGR +      KYLNSP
Sbjct: 176 YEDSFLKETGLVTVEERGGR--DKFWNRVMFPIMDVNNRVIGFGGRVM-GDGEPKYLNSP 232

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LF K +NLY    A              +   F ++ EGY+DV+SL QAG  N V+S
Sbjct: 233 ETKLFDKSRNLYGLNYAR------------TSREKFFLICEGYLDVISLHQAGFTNAVAS 280

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA T     +L + + +++L +D D  G++AA +AI +       G  +  + +   +
Sbjct: 281 LGTAFTTQHANVLKRYTDQVILTYDSDGAGVKAALRAIPI---LKEVGMSIKVLNMRPYK 337

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD FI+  G  AF + I E+            ++     P+++ +  +     +    +
Sbjct: 338 DPDEFIKNMGAEAFRERIGEARNSFMFEVDVLKKDYQLEDPEQKTKFYLETAKMLLRFGE 397

Query: 418 QKLRYYYSQAIR-------DRLQQLFQKYI------------------------------ 440
              R  Y QA+        + L+QL  +                                
Sbjct: 398 PLERDNYIQAVSREHMIPYEELRQLVNRLGMTMGLKAGESYSKQAAGRINRQAGAYSERG 457

Query: 441 -TEHSGYGRYWKKNARHRDQKGPSQR--------LMQSSLVKGKLSKKPSLREAALLLTL 491
                G      +    ++  GP                  +          +  LL  L
Sbjct: 458 EAASRGQSAGNAQGGYAQESGGPPDSREGYGARGPGAKREKRPAKEDGIRKSQRLLLTWL 517

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           I +P +  +    +    +  +   ++   +F             + + + +    + + 
Sbjct: 518 IENPELFDKIDGIITADDFVEDLYHQVADEVFRGHAAGTLNPAAILSRYINDEDQYKEVA 577

Query: 552 QLDRQVRDAGLWSATTEANIVD----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            L        L +   +    +    VR+      +   +     ++    +  + Q+  
Sbjct: 578 ALFNASLSDSLSNEEQKKAFSETVYKVRKNSLDTASKNAKDIAGLQEIIRQQAALKQLRI 637

Query: 608 KGE 610
             +
Sbjct: 638 TLD 640


>gi|307246389|ref|ZP_07528465.1| DNA primase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307255375|ref|ZP_07537185.1| DNA primase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307259825|ref|ZP_07541543.1| DNA primase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306852722|gb|EFM84951.1| DNA primase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306861684|gb|EFM93668.1| DNA primase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866123|gb|EFM97993.1| DNA primase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 580

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 176/618 (28%), Positives = 283/618 (45%), Gaps = 52/618 (8%)

Query: 1   MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M    PR FI DL+    I  LI   V   +        DY ACCPFH EK+PSF  + S
Sbjct: 1   MKGTIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQS 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKI 113
           K FY+CF C   G+ +SFL       F E+++ LAA+ G+ +P       D K +   K 
Sbjct: 56  KQFYHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVMARDGKPQASYKT 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + +L  L+E  + F+  +L      +   YL  RG+    I  F++G+A +S  S+    
Sbjct: 116 KRNLYELLEAISRFYQQNLTQDIPSQS--YLQSRGLSPEIIARFEIGFAYNSMDSVLRKF 173

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
                 E + +    +I  ++S   YD+FRNR++FPIR  RG+VIAFGGR +   E  KY
Sbjct: 174 GT-NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKY 231

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPE+  +HKG  LY  F AL           +  + + +++VEGYMDV++L Q GV N
Sbjct: 232 LNSPESATYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDN 281

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           VV+SLGTA T  Q++ +++++ +++ C+DGD  G  AA++A +  L +L  G ++ F+ L
Sbjct: 282 VVASLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFL 341

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             GEDPDSF+R  GK  FE  +  ++ L D L+         ++ + +++L       IN
Sbjct: 342 PDGEDPDSFVRAQGKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLIN 401

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            I  + LR Y    +  +L  L    +           +    R  +     +       
Sbjct: 402 RIPGEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVRTPQIKRTPM------- 454

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                        L+  L+ +P +++      A    +    + L   L     ++    
Sbjct: 455 -----------RLLIALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVS 502

Query: 534 PEEIHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKR 587
              + +   ++      ELL   +  V    + +   E        + +   + L    R
Sbjct: 503 MGALLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDR 562

Query: 588 FRLLS-RQKEEIEKQIAQ 604
              LS  +K+E+   I Q
Sbjct: 563 SLGLSAEEKQELVMLIVQ 580


>gi|290474859|ref|YP_003467739.1| DNA biosynthesis; DNA primase [Xenorhabdus bovienii SS-2004]
 gi|289174172|emb|CBJ80959.1| DNA biosynthesis; DNA primase [Xenorhabdus bovienii SS-2004]
          Length = 582

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 164/598 (27%), Positives = 273/598 (45%), Gaps = 41/598 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N       ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRAFINDLLARTDIIDLIDIRVPLKKKGKNHQ-----ACCPFHNEKTPSFTVNADKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LAA+ G+ +P          +   + +L +
Sbjct: 59  YHCFGCSAHGNAIDFLMNYDRLDFVESIEELAAMHGLEVPYEANSGGGHIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+ HSL     +    YL  RG+    I  F +G+AP    ++ +        
Sbjct: 119 LMDTINSFYQHSLTTPNGQSAQQYLLRRGLSEEIIHRFAIGFAPTGWDNVLKQFAHNAEE 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            +++ +AG+L+  +++  +YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RKQLNDAGMLV-TNDNGRTYDRFRERVMFPIRDRRGRVIAFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A        R          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEAQQNHNSLSR----------LLVVEGYMDVVALAQFGIDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  +V C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHVQLLFRTTDNVVCCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS IR  G+  FE+ + ++L L   L++        +TP+   ++       I+ +  + 
Sbjct: 347 DSLIRKEGREVFEQRMEKALTLSTFLFESLLPQVDLSTPEGTTKISSLAMPLISQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q + + L       +            +     +  P+                
Sbjct: 407 LRLYLLQELGNLLGTPDTTQLERFLAKLVKKDTSTYQALKLKPTTM-------------- 452

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +                 L  L+  L    + Q      ++ +
Sbjct: 453 -----RILIALLVQNPHLATLVPSLQGLFSVQIAGL-PLFIELVDTCLAQPGLTTGQLLE 506

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           +  +  + + L++L     +        E    D       +    +   L+++++ E
Sbjct: 507 QYRDNKYAKQLEKLAAW--NDIQVDEIAEKTFSDALNHLFASALDERFSFLIAKERTE 562


>gi|194290319|ref|YP_002006226.1| DNA primase [Cupriavidus taiwanensis LMG 19424]
 gi|193224154|emb|CAQ70163.1| DNA PRIMASE [Cupriavidus taiwanensis LMG 19424]
          Length = 603

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 170/642 (26%), Positives = 277/642 (43%), Gaps = 57/642 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI+DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPQSFIQDLLNRVDIVDVVGKYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-----PKIEKKEKIQTDL 117
           +CF C   G  + FL    G S+ E+V+ LA   G+ +P         +  +++     L
Sbjct: 57  HCFGCGAHGSAIGFLMEFSGQSYPEAVRELAQSVGMTVPEERDRLPPGQRAEQQARSVAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              +  ATDF+   L+     +   YL  RG+       F LGYAPD    L        
Sbjct: 117 SDAMTRATDFYRRQLRG--APQAIQYLKGRGLTGEIAGQFGLGYAPDDWQGLETVFGSYR 174

Query: 178 FSEEKI-------IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
                        +      D D     YDRFR+R++FPIR+++G VI FGGR + +GE 
Sbjct: 175 DDNVAAPLVEAGLLIESDKRDADGKPRRYDRFRDRIMFPIRNTKGAVIGFGGRVMGQGEP 234

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF KG  LY  F A + ++           + ++++VEGYMDV++L Q G
Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARHAIR----------ETGYVLVVEGYMDVVALAQLG 283

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
             N V++LGTA T   ++ L + +  +V  FDGD  G RAA +A++  L H+     + F
Sbjct: 284 FANAVATLGTACTPVHVQKLLRQTDAVVFSFDGDSAGRRAARRALEACLPHVADNKTIRF 343

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           + L    DPDS++R  G+ AF   +  ++PL   L +  TE      P+ RA  +   K 
Sbjct: 344 LFLPAEHDPDSYVREEGREAFAAQVRNAMPLSRFLLQSVTEELDLRQPEGRARAQYEAKP 403

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  +    LR    + + D         I    G      +  R    +  ++R   + 
Sbjct: 404 LLQAMPAGGLRLQIVRELADATG-TTPAEIEAICGLRSDPARVGRFAQPRPRARRQAPTG 462

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN--ELQKLWSFLFSDFVE 528
           L            E  ++  L+ +PA+     ++   +  D    + + L   + +    
Sbjct: 463 L------------EQRVIQLLMCYPALSARLDEDARALLLDGEGGDSEVLAHLVSACDGV 510

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
           Q         + L +  + E+       V    +  A       +      + LA     
Sbjct: 511 QGEVNFAAFSEHLAQSPYAEVYAAARTAVLREEIEEAP---ATQEFDAAITKLLA----- 562

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629
             L R+ + ++ ++   TA    E     +  L  E+H +  
Sbjct: 563 EPLRRELDSLQAEVIAGTA---DEAAKQRMRWLVGEIHRRRQ 601


>gi|261868196|ref|YP_003256118.1| DNA primase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413528|gb|ACX82899.1| DNA primase [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 585

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 177/628 (28%), Positives = 292/628 (46%), Gaps = 54/628 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI D+L  I I +LI   V   +        DY ACCPFH EKTPSF  +D K F
Sbjct: 4   SIPRTFIDDILTKINIVDLINSRVKLKKAGR-----DYQACCPFHHEKTPSFTVSDKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------DPKIEKKEKIQT 115
           Y+CF C   G+ +SFL       F+E+V+ LA   G+ +P        D   +   + + 
Sbjct: 59  YHCFGCGAHGNAISFLMEYDKLEFVEAVEELAGFLGLEIPYEKRPHFNDGGKQVNFQTKR 118

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           +L  L++    F+   L    +     YL +RG+ +  IE F++GY P++  S+     +
Sbjct: 119 NLYELMQEIAKFYQQQL--PLNIPAQSYLQQRGLSAEVIERFQIGYVPNAMDSVYRQFGK 176

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
               ++K+ + G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLN
Sbjct: 177 NREEQQKLFDLGMLSRNDRG-NVYDKFRNRIMFPIRDRRGRTVAFGGRVL-TDEKPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET+ +HKG  LY  + AL             +S   +++VEGYMDV++L Q GV   V
Sbjct: 235 SPETVTYHKGSELYGLYEALQA----------DDSPQKLLVVEGYMDVVALAQFGVNYAV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +SLGT+ T  Q++LL++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  
Sbjct: 285 ASLGTSTTSEQIQLLFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPD+FIR YGK  FE+ +  +  L + L+   T    F++ + +A+L       I  I
Sbjct: 345 GEDPDTFIRQYGKQGFEEYLDNAQSLSEFLFAHLTPKVDFSSKEGKAKLAALAIPLIKQI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               LR      +  +L  L    +              +      P+ +  ++ +    
Sbjct: 405 PGDVLRLDLRNTLAKKLGILDPAQLESML------PNQVKAEGPVAPTMQFKRTPM---- 454

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                      L+  L+ +P ++ +   +L  +R  N     L + L +   E+      
Sbjct: 455 ---------RILIALLLQNPELV-KFVPDLEPLRNLNEPGYDLLAELTALCREKVGISSG 504

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ +   +      L++L              +  I D  +   +   L    + ++   
Sbjct: 505 QLLEYWRDTTQQSTLEKLLAWN------HLIEDDKIEDTFRETLRYFYLQLVDKRINWLI 558

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHE 623
               K  A+     E ++ + L+    E
Sbjct: 559 A---KDRAEGLDLNEKKELSHLLVKKQE 583


>gi|255525305|ref|ZP_05392245.1| DNA primase [Clostridium carboxidivorans P7]
 gi|296188173|ref|ZP_06856565.1| DNA primase [Clostridium carboxidivorans P7]
 gi|255510977|gb|EET87277.1| DNA primase [Clostridium carboxidivorans P7]
 gi|296047299|gb|EFG86741.1| DNA primase [Clostridium carboxidivorans P7]
          Length = 587

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 177/629 (28%), Positives = 275/629 (43%), Gaps = 43/629 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D I+ +     I ++I + V   R   N     Y   CPFH EKTPSF  +  K  Y
Sbjct: 2   ISEDVIQRVKEENDIVDVISETVKLKRAGRN-----YSGLCPFHHEKTPSFSVSIDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ ++F+      SF E+V+ LA    + +   +  + K       L +L  
Sbjct: 57  KCFGCGEAGNVITFVMKTKNLSFPEAVRLLANRVNITIETDENNVHK--DTFKQLYKLNV 114

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            +  +F + L    + +   YL  RGI    I  F LGY+ +S   L  HL++KGF+E  
Sbjct: 115 DSARYFFNCLGENANAKQ--YLLNRGITEKTIRSFGLGYSANSWDGLLRHLKKKGFTELD 172

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++  GL+I      + YDRFRNR+IFP+   RG+VI FGGR +      KYLNSPET LF
Sbjct: 173 MLSNGLIIKSQKG-SYYDRFRNRIIFPVFDYRGRVIGFGGRVM-DDSKPKYLNSPETTLF 230

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG NLY    A+   +              +I+VEGYMD +SL Q G+ N V+SLGTAL
Sbjct: 231 KKGVNLYGLNFAIKNNR-----------ERMLIIVEGYMDCISLHQYGITNAVASLGTAL 279

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q +L+ K +   ++ +D D  G  A  + +++       G  V  + +  G+DPD +
Sbjct: 280 TTNQAKLIKKYADSAIIAYDADSAGQMATMRGLEI---LKKVGLDVKVLKVPEGKDPDEY 336

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           IR  GK AF KLI E+LPLVD   K+  EN  FN  +   +        I+ + D   R 
Sbjct: 337 IRNNGKEAFIKLIEEALPLVDYRIKKIKENIDFNNSEGVIKYAEQALEIISDL-DAIERE 395

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + + +      Q      +   +   K       K  +  +      K  L      
Sbjct: 396 IYIKKLSEETGIRDQALYDMINTKIQKNVK-------KSENMNIDNDFGQKLYLEPAYLK 448

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  LL  +      L+   + +          +K++ ++     E   +  EE  +R+ 
Sbjct: 449 AERGLLKAIFKDEKALEYVEKSIKREELILESHRKIYDYIV----ENMQYDEEERRKRIE 504

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +        +D       +  A    +  D        +   K+F+ L   K++I  +I
Sbjct: 505 VKC-----DDIDTSKEWVNIIEADFIYDSSDYENIVDDYIRGIKKFK-LEESKKQIMNRI 558

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQI 631
            Q    G+ E++  L   L ++  +I  +
Sbjct: 559 KQYEIDGKLEESLKLAQELIQIQKKIGGM 587


>gi|293391710|ref|ZP_06636044.1| DNA primase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952244|gb|EFE02363.1| DNA primase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 585

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 176/634 (27%), Positives = 297/634 (46%), Gaps = 59/634 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI D+L  + I +LI   V   +        DY ACCPFH EKTPSF  +D K F
Sbjct: 4   SIPRTFIDDILTKVNIVDLINSRVKLKKAGR-----DYQACCPFHHEKTPSFTVSDKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------DPKIEKKEKIQT 115
           Y+CF C   G+ +SFL       F+E+V+ LA   G+ +P        D   +   + + 
Sbjct: 59  YHCFGCGAHGNAISFLMEYDKLEFVEAVEELAGFLGLEIPYEKRPHFNDGGKQVNFQTKR 118

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           +L  L++    F+   L    +     YL +RG+ +  IE F++GY P++  S+     +
Sbjct: 119 NLYELMQEIAKFYQQQL--PLNIPAQSYLQQRGLSAEVIERFQIGYVPNAMDSVYRQFGK 176

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
               ++K+ + G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLN
Sbjct: 177 NREEQQKLFDLGMLSRNDRG-NVYDKFRNRIMFPIRDRRGRTVAFGGRVL-TDEKPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET+ +HKG  LY  + AL             +S   +++VEGYMD ++L Q GV   V
Sbjct: 235 SPETVTYHKGSELYGLYEALQA----------DDSPQKLLVVEGYMDAVALAQFGVNYAV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +SLGT+ T  Q++LL++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  
Sbjct: 285 ASLGTSTTSEQIQLLFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPD+FIR YGK  FE+ +  +  L + L+   T    F++ + +A+L       I  I
Sbjct: 345 GEDPDTFIRQYGKQGFEEYLDNAQSLSEFLFAHLTPQVDFSSKEGKAKLAALAIPLIKQI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               LR      +  +L  L    +              +      P+ +  ++ +    
Sbjct: 405 PGDVLRLDLRNTLAKKLGILDPAQLESML------PNQVKAEGPVAPTIQFKRTPM---- 454

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                      L+  L+ +P ++ +   +L  +R  N     L + L +   E+      
Sbjct: 455 ---------RILIALLLQNPELV-KFVPDLEPLRNLNEPGYDLLAELTALCREKVGISSG 504

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ +   +      L++L                    +   +++ L  Y   +L+ ++ 
Sbjct: 505 QLLEYWRDTTQQSTLEKLLAWNHLI---------EDDKIEDTFRETLR-YFYLQLVDKRI 554

Query: 596 EEIEKQIAQVTAKG-EAEKTAILISILHEVHIQI 628
             +   IA+  A+G +  +   L  +L +   + 
Sbjct: 555 NWL---IAKDRAEGLDLNEKKELSHLLVKKQEKR 585


>gi|160892999|ref|ZP_02073787.1| hypothetical protein CLOL250_00536 [Clostridium sp. L2-50]
 gi|156865082|gb|EDO58513.1| hypothetical protein CLOL250_00536 [Clostridium sp. L2-50]
          Length = 589

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 157/631 (24%), Positives = 270/631 (42%), Gaps = 45/631 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I +++    I N+I  YV   ++        + ACCPFH EKTPSF  +  K 
Sbjct: 1   MYYSDEVIDEVISRNDIVNVISGYVSLRKKGR-----TFEACCPFHHEKTPSFKVDRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLI 118
            Y+CF C   G+  +F+      SF E+VQ LA  AG+ LP      +   +EK +  L 
Sbjct: 56  LYHCFGCGAGGNVFTFIMEYENMSFPEAVQYLADKAGMTLPESSQSGQDASREKYKILLR 115

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            + + A  +FH+ ++     K+ + Y   RG+    I+ F LGYA   R  L  +L+ KG
Sbjct: 116 DMNKTAAAYFHYIMRHTEHGKKAYEYFKGRGLSDETIDRFGLGYADVYRDDLYRYLKGKG 175

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           +S+ ++ ++GL++  + +  S D+F NR + PI    G+VI FGGR +      KY+N+ 
Sbjct: 176 YSDSELKDSGLVVIDEKNGGS-DKFWNRAMIPILDINGKVIGFGGRVM-GDGKPKYINTS 233

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T++F K +NL+    A    +K              I  EGYMDV+S+ QAG  N V+S
Sbjct: 234 DTVVFDKSRNLFAMNIARRSRRKG------------FICCEGYMDVISMHQAGFDNAVAS 281

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA T     +L + +  + L +D D  G+ A  K I ++      G     + +   +
Sbjct: 282 LGTAFTFGHANILKRYTNEVYLAYDSDGAGVAATLKVISIMR---EVGISARVINMRPHK 338

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD FI+  G  AFE+ I ++   +    +  +E  + N P+ER          +  I++
Sbjct: 339 DPDEFIQTLGSEAFEERIQKAESAIMFEVRMLSEQYNLNDPEERTSFHNETAKRLAQIEE 398

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R  Y +A+ +               YG          +++         +    K  
Sbjct: 399 VLERNNYIEAVSNLYHIDKTGLTDLVHKYGIAGVPRLEIVEREERRAEHESRAADPAKNK 458

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                    LL  ++N P + Q+    + +  +++   + +   LFS + E     P  I
Sbjct: 459 PM-----KLLLTWMVNEPGLFQKLDGIIDETSFEDGVYRVVADKLFSQYRENGKVEPASI 513

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                      L+ ++ +      +        + DV +                 +   
Sbjct: 514 VTTFESIEEQRLVAEMLQTNIGIDMTQEEINNAVTDVVKKI---------------RLSS 558

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           IE ++A+     E +      + L ++HI +
Sbjct: 559 IEDKLAKTNDIKEMQNLIRAKADLTKLHISL 589


>gi|89094382|ref|ZP_01167322.1| DNA primase [Oceanospirillum sp. MED92]
 gi|89081274|gb|EAR60506.1| DNA primase [Oceanospirillum sp. MED92]
          Length = 656

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 181/683 (26%), Positives = 287/683 (42%), Gaps = 81/683 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVD-WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P+ FI DLL  I I +++   V    R   N     Y   CPFH EKTPSF  N  K 
Sbjct: 4   RIPQHFIDDLLARINIIDVLDGRVQKLKRTGKN-----YSGLCPFHKEKTPSFTANQEKQ 58

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIR 119
           FYYCF C   G+ L FL      +F E+V+ LA  AG+ +P  D   +++  ++ + L  
Sbjct: 59  FYYCFGCGAGGNALGFLMDYENLNFPEAVEELAKTAGMEVPRDDSPQQREHDLRLSKLYE 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L++ A+ ++   L++ + +       + RG+   A + F +G+AP    ++  HL +   
Sbjct: 119 LLKAASSYYEDQLRSHQTRESAVNYLKSRGLSGQAAKAFSIGFAPSGWDNILNHLGKSEE 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             + + E+GLLI  +   + YDRFRNR++FPIR  RG+VI FGGR L   +  KYLNSPE
Sbjct: 179 EIQLLEESGLLIHNEERDSRYDRFRNRIMFPIRDQRGRVIGFGGRVL-GDDKPKYLNSPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T  FHK + LY  + A  + QK  R          +I+VEGYMDV+ L Q  +   V++L
Sbjct: 238 TPTFHKSRELYGLYEARKHNQKLER----------LIIVEGYMDVVGLAQFDIHYAVATL 287

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T   L  L+K+ P ++ CFDGD+ G  AA +A+   L  +  G    F+ L  GED
Sbjct: 288 GTATTSQHLERLFKIVPEVIFCFDGDNAGREAAMRALKTTLPVIEDGKEARFLFLPDGED 347

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK  FE  I  + PL +  +K  +E    ++ D RA     +   IN +K  
Sbjct: 348 PDSLVRQEGKENFENRISTAQPLSEFFFKCHSEGADLDSMDGRARFSTEVLPAINSMKTS 407

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ------------------- 459
            L+      I +      ++  T  +      +      +                    
Sbjct: 408 LLQQMMLDKICELTHLSLEQIQTAINFRESVQEPAQAQNNNPVQHYSENEYDYSGYDYSP 467

Query: 460 ---------------------KGPSQRLMQSSLVKGKLSKKPSLRE----AALLLTLINH 494
                                  P +   Q           P   E      L+  L++ 
Sbjct: 468 EEREYQPGYEDAYNFSGDDYAPKPKKNYKQRDGKPRSFQPPPRNTELSFAQKLVSLLLHF 527

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL-CERGFGELLKQL 553
           P +  E  +        N+   K+ S L   +         ++      +    E + QL
Sbjct: 528 PKLASEY-RLPEGTELINDSNIKILSQLVDYYSRNPDSSLGQLVVDWREDAALSETIVQL 586

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                   + S          R     AL   +  + +      ++K+      + +AE+
Sbjct: 587 YEISSSLEIKSEAEG------RVYLNDALKELE-LKAIEADVSSLQKK-----HELKAEE 634

Query: 614 TAILISILHEVHIQIHQIESQEA 636
              L+        ++++++S  A
Sbjct: 635 KQRLLQHF----KRLNELKSSYA 653


>gi|254669784|emb|CBA04067.1| DNA primase [Neisseria meningitidis alpha153]
 gi|325134648|gb|EGC57288.1| DNA primase [Neisseria meningitidis M13399]
 gi|325138536|gb|EGC61099.1| DNA primase [Neisseria meningitidis ES14902]
          Length = 590

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 181/608 (29%), Positives = 292/608 (48%), Gaps = 42/608 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK   +     YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLK--FNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  +    
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + ++ R    +       E +  + + G ++ L   K  ++ + ++
Sbjct: 507 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 566

Query: 596 EEIEKQIA 603
           + ++  + 
Sbjct: 567 KSLQSGLN 574


>gi|307257543|ref|ZP_07539307.1| DNA primase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306863979|gb|EFM95898.1| DNA primase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 580

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 176/618 (28%), Positives = 284/618 (45%), Gaps = 52/618 (8%)

Query: 1   MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M    P  FI DL+    I  LI   V   +        DY ACCPFH EK+PSF  + S
Sbjct: 1   MKGTIPSSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQS 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKI 113
           K FY+CF C   G+ +SFL       F E+++ LAA+ G+ +P       D K +   K 
Sbjct: 56  KQFYHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVINRDGKPQASYKT 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + +L  L+E  + F+  +L      +   YL  RG+ +  I  F++G+A +S  S+    
Sbjct: 116 KRNLYELLEAISRFYQQNLTQDIPSQS--YLQNRGLSAEIIARFEIGFAYNSMDSVLRKF 173

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
                 E + +    +I  ++S   YD+FRNR++FPIR  RG+VIAFGGR +   E  KY
Sbjct: 174 GT-NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKY 231

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPE+  +HKG  LY  F AL           +  + + +++VEGYMDV++L Q GV N
Sbjct: 232 LNSPESATYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDN 281

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           VV+SLGTA T  Q++ +++++ +++ C+DGD  G  AA++A +  L +L  G ++ F+ L
Sbjct: 282 VVASLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFL 341

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             GEDPDSF+R  GK  FE  +  ++ L D L+         ++ + +++L       IN
Sbjct: 342 PDGEDPDSFVRAQGKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLIN 401

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            I  + LR Y    +  +L  L    +           +    R  +     +       
Sbjct: 402 RIPGEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVRTPQIKRTPM------- 454

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                        L+  L+ +P +++      A    +    + L   L     ++    
Sbjct: 455 -----------RLLIALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVS 502

Query: 534 PEEIHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKR 587
              + +   ++      ELL   +  V    + +   E        + +   + L    R
Sbjct: 503 MGALLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDR 562

Query: 588 FRLLS-RQKEEIEKQIAQ 604
              LS  +K+E+   IAQ
Sbjct: 563 SLGLSAEEKQELVMLIAQ 580


>gi|117928014|ref|YP_872565.1| DNA primase [Acidothermus cellulolyticus 11B]
 gi|117648477|gb|ABK52579.1| DNA primase [Acidothermus cellulolyticus 11B]
          Length = 655

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 152/669 (22%), Positives = 258/669 (38%), Gaps = 68/669 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +    PI++++ +YV       NA  G     CPFHDE+TPSFH   ++G 
Sbjct: 4   RIRDADIARVRELSPIADVVAEYVTL----RNAGGGSLKGLCPFHDERTPSFHVTPARGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIR 119
           ++CF C   GD ++F+  +   SF E+V+RLAA  G  L         +     +  L+ 
Sbjct: 60  WHCFGCGEGGDVITFVEKIEHLSFFEAVERLAARVGYELHYEQGPASLRGSGGQRQRLLA 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A  FF   L  +       +L +RG D   I  + LG++P     L  HLR++GFS
Sbjct: 120 ANTAAAAFFAAQL--SDAPAARRFLTDRGFDDATISRYGLGFSPARWDELVRHLRREGFS 177

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238
           ++ ++ AGL I G+      DRFR RL++PIR   G ++ FG R L    +  KYLN+PE
Sbjct: 178 DDDLVTAGLAIRGNR--GLVDRFRGRLMWPIRDITGDIVGFGARKLDPADDGPKYLNTPE 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF K   LY    A   + +              ++VEGY DV++   AGV   V++ 
Sbjct: 236 TPLFKKSSVLYGIDLAKKDIARI----------RQAVIVEGYTDVMACHLAGVTTAVATC 285

Query: 299 GTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  E  +R+L +           ++  FD D  G +AA +A +     +         
Sbjct: 286 GTAFGEEHVRVLRRLLLDTSEFGGEVIFTFDADAAGRKAAMRAFESDQKFVA---HTFIA 342

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP       G  A   +I    PL +   +    + + + P+ R          
Sbjct: 343 VAPDGMDPCDLRLARGDAAVRDMIARRQPLFEFAIRSLLRDFNLDLPEGRVAALERTIPL 402

Query: 412 INHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
           +  IKD  LR  Y++ +   +       + ++   E  G  R  +  A          R 
Sbjct: 403 VARIKDVSLRDEYARRLAGWVGVGDELAVVRRVRREAGGSARGPRPGAPGLRGAAADPRG 462

Query: 467 MQSSLVKGKLSKK--------------------------PSLREAALLLTLINHPAILQE 500
             S         +                              E   L   +  PA+L  
Sbjct: 463 TASGPRGTASGPRGTASGPRPPEAGPAADPAAAPDPRDPALQVEREALKLALQRPALLGP 522

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
            +  L    + +    ++   +            +     + +    + +++L R++   
Sbjct: 523 AFDALDAAAFRSPAYAEVRDAIEKAGGTATTAGGDGWVAAVLDAAPDDRVRRLVRELLVE 582

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
             + A       +    Y  A     R RLL R+  E++ ++ ++    +  +   L + 
Sbjct: 583 PPFVA------GEPDVRYAAAQVARLRVRLLDREIAELKSRLQRINPVEQPTEHTRLFAE 636

Query: 621 LHEVHIQIH 629
           L ++  +  
Sbjct: 637 LVQLEKRRR 645


>gi|297544973|ref|YP_003677275.1| DNA primase [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842748|gb|ADH61264.1| DNA primase [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 601

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 156/635 (24%), Positives = 293/635 (46%), Gaps = 43/635 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y R+ I+ ++    I ++I +YV+  +        ++   CPFH EKTPSF  +  K 
Sbjct: 1   MAYSREMIERVIEANDIIDVISEYVELKKAGK-----EFKGLCPFHREKTPSFMVSQEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--DLI 118
            Y+CF C+  G+ ++F+  +   +F ++++ LA   G+ L  V+   ++ +K +   ++ 
Sbjct: 56  VYHCFGCNASGNVVTFIMDIENLTFKDAIEFLADRVGITLEEVELTEKEYQKKKLIGEIC 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           ++ ++A  +F++ L +   ++   Y+ +RG+    I+ F +GY+P     L   L++KG+
Sbjct: 116 KVNKLAAVYFYNKLFSEEGRQALAYIRKRGLTEATIKKFGIGYSPPEGNGLLNFLKEKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +E  +++AGLL     +   YDRFRNR++FPI   +G VI FGGR +      KYLN+PE
Sbjct: 176 TESFLLKAGLLSQ--KNNRYYDRFRNRVMFPIIDLKGNVIGFGGRAI-DDSLPKYLNTPE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F KGK L+    A                    I+VEGYMD +SL QAG+   V+SL
Sbjct: 233 TEVFKKGKTLFAINFAKK------------TQQDKFIIVEGYMDAISLHQAGIDCAVASL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE Q +L+ +    +++ +D D+ G+ AA + +D+          +  + +  G+D
Sbjct: 281 GTALTEDQAKLIKRYKRNVIIAYDADEAGVSAAIRGLDI---LDELNLNIKVLTIPEGKD 337

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AF +LI  +  L++   K   +N   + P +R      +   I ++ D+
Sbjct: 338 PDEFIKKEGVEAFNQLIENAESLIEFKAKVYRKNLDLDNPQDRIVYVKKIAKDIANLSDE 397

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y  ++    Q       TE S +     +  +       + R    S  K     
Sbjct: 398 VKREVYISSVAKVAQIPENAVRTEVSRFVNRKIRKNQKNMYMAGNIRHNIYSSNKISP-- 455

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E  L+  ++    + +   + +     +N +L+ ++  + S     +     +I 
Sbjct: 456 -----EKYLIALILYDNDLYKRIKETITPDMLENVKLRPVFEEIMSRLEVGEKVQINDIV 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L E         + +   ++            ++ +     +        L+ ++E I
Sbjct: 511 YLLQEENLISEFNDIIKAFYES-----------ENITEQAADDIINKILINSLAVKRENI 559

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++ I +    G+ EK   L+  L     ++ +I++
Sbjct: 560 KRAINEAHMLGDIEKERQLLIELQNCEKEMLKIKN 594


>gi|24372866|ref|NP_716908.1| DNA primase [Shewanella oneidensis MR-1]
 gi|24346978|gb|AAN54353.1|AE015572_8 DNA primase [Shewanella oneidensis MR-1]
          Length = 574

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 174/620 (28%), Positives = 286/620 (46%), Gaps = 55/620 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+    I  LI + V   +   N     Y ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   G+ + F+       F+++++ LA   G+ +P      ++++  +  DL +
Sbjct: 56  FYHCFGCGAHGNAIDFVMEYDRLDFVDAIEDLAGQLGLEVPREQGTGKRQDDGLSRDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A+ FF   L+  +DK+    YL  RG+    +E F +G+APD    L    RQ   
Sbjct: 116 LMEEASRFFQTQLRQHQDKQKVIDYLAYRGLSDDIVEHFGIGFAPDGWDGLLSRYRQNQD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +++K++ AG+LI  D+    YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 176 AQDKLLTAGMLISNDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +              +++VEGYMDV++L Q GV   V+SL
Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------DKVLIVEGYMDVVALAQYGVDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  ++ C+DGD  G  AA++A++  L  L PG++V F+ L + ED
Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK  FE+L+  ++ L + L+             ++  L       I  I+D 
Sbjct: 344 PDSMVRKIGKDPFEQLMESAITLPEFLFDTLATKF----GTDKGNLAKQAFGLIEKIQDT 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L+    + +  +L       + +  G+     K       KG    L            
Sbjct: 400 VLQNLLLENLAHKLGMNSSDDMKKKLGFTVKQPKPTASTGLKGRGTPL------------ 447

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                    +  L+ HP +      + A        +      L      +      ++ 
Sbjct: 448 ------RLAIALLVQHPELGVGLSPQPALNHLQMPGIDL--LPLLLALTREHRLNSAQLL 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++  +      L +L +            +    +  + ++Q L ++   + + ++ +E+
Sbjct: 500 EQFRDSPHSGTLHKLAQW---------DHQVAEENQLEKFKQTL-VWLNNQYIEQRYQEL 549

Query: 599 EKQIAQVTAKGEAEKTAILI 618
              + Q   K E  +   LI
Sbjct: 550 --SLKQTHTKEEKIQLQKLI 567


>gi|255066478|ref|ZP_05318333.1| DNA primase [Neisseria sicca ATCC 29256]
 gi|255049358|gb|EET44822.1| DNA primase [Neisseria sicca ATCC 29256]
          Length = 590

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 183/629 (29%), Positives = 297/629 (47%), Gaps = 48/629 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL  + I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMAVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LG APD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGSAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++ + R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKDAGR----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  +++ + NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + +  K P   + Q  ++   
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKSYKLPPISVKQPVML--- 454

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                +L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYVALDGDFACLANLAETIKSHAAVPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + Q+ +    +       E +  + + G ++ L   K      +Q 
Sbjct: 507 QVLEYMRGSPYEETVNQIFQSTLYSEEMEGGGEEDRENFQIGMKKLLNELK-----YQQI 561

Query: 596 EEIEKQ-IAQVTAKGEAEKTAILISILHE 623
           E ++++ +     + E +    L++    
Sbjct: 562 ETLKQKSLQSGLNENEKKLLLSLLTAKQN 590


>gi|227529170|ref|ZP_03959219.1| DNA primase [Lactobacillus vaginalis ATCC 49540]
 gi|227350895|gb|EEJ41186.1| DNA primase [Lactobacillus vaginalis ATCC 49540]
          Length = 616

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 164/642 (25%), Positives = 276/642 (42%), Gaps = 51/642 (7%)

Query: 16  PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75
            IS++IG YV   +         +   CPFH+E+TPSF  N+ K F+YCF C   G+   
Sbjct: 2   DISDVIGHYVQLHQSGKG-----FVGLCPFHEEQTPSFSVNEQKQFFYCFGCGRGGNVFQ 56

Query: 76  FLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTDLIRLIEVATDFFH 129
           FL  L    F E+V  +A +A V LP            ++       L+ + E A   +H
Sbjct: 57  FLMELKHIPFTEAVAEVAQLANVDLPSQYLNNGDRSIHQENNTPNGKLMVMHEEAAKLYH 116

Query: 130 HSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
           H L N     +   YL  RG+    I  F LG+AP+ R  L+  L QK    + + ++GL
Sbjct: 117 HILMNTPAGAQALKYLKGRGMTDELINDFNLGFAPEQR-ILKPFLEQKINDYQLLRKSGL 175

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL--SKGESVKYLNSPETILFHKGK 246
            ++ +N    +DRF +R++FP+R+  G+VI F GR +     ++ KYLNSPET +F+K +
Sbjct: 176 FVEDNNG-GLHDRFVDRVMFPLRNQNGRVIGFSGRVIGKVPADTPKYLNSPETPIFNKRR 234

Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306
            L+NF  A    +           +S I L EG+MDV+S   AG +N V+S+GT+LTE Q
Sbjct: 235 TLFNFDIARKEAR----------GTSKIYLFEGFMDVISAYSAGAKNGVASMGTSLTEEQ 284

Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
           + +L +   ++ +C+DGD  G  A  +A+ L   H   G ++  V L  G DPD +++  
Sbjct: 285 VGILGRAVRQVDICYDGDSAGQNAIDRAVTLFRDHQPQGMQLRVVQLPAGIDPDEYVQQN 344

Query: 367 GKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
           G   F K L+ +    VD   +    N++ N   E           +  +     +  Y 
Sbjct: 345 GADKFAKYLVDQEETPVDFYLRFYRLNKNLNNQTELISYLEQSLKLLATLSSSLEQDMYL 404

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR------------LMQSSLVK 473
             +            ++     R      RH       Q                S  ++
Sbjct: 405 TQLAKEFDLDKATLKSQLQDISRRLGGRKRHSQPASLPQNEGSSSGFSVGPGPASSPALQ 464

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
               K+  L E  LL  + +   +       + D  + +   Q L+    S F E   + 
Sbjct: 465 RNPIKRTELAEQLLLRYMFHDQEVWDHVA-AINDFHFAHERYQTLYLLAESYFSEHGEYS 523

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +   L E      L Q+++   D  +     +             + L +    LS+
Sbjct: 524 AAGLMDYLKEDSLRSTLGQIEQLNVDDVVNMQLID-----------DCVQLIQEQIPLSQ 572

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           + +E++ QI + ++   +E    L   L ++  +  +++++E
Sbjct: 573 KIKELQSQIREASSLNNSELATQLTMKLIKLLKKQQELKAEE 614


>gi|15894581|ref|NP_347930.1| DNA primase [Clostridium acetobutylicum ATCC 824]
 gi|464463|sp|P33655|PRIM_CLOAB RecName: Full=DNA primase
 gi|15024229|gb|AAK79270.1|AE007642_2 DNA primase, DNAG [Clostridium acetobutylicum ATCC 824]
 gi|580959|emb|CAA80624.1| primase [Clostridium acetobutylicum ATCC 824]
 gi|325508713|gb|ADZ20349.1| DNA primase [Clostridium acetobutylicum EA 2018]
          Length = 596

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 169/630 (26%), Positives = 281/630 (44%), Gaps = 40/630 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D I+ +     I +++ + V   R   N     Y   CPFH EKTPSF  +  K  Y
Sbjct: 6   IAEDIIQKVKDLNDIVDIVSEKVKLKRTGRN-----YSGLCPFHHEKTPSFSVSQDKQIY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKIQTDLIRLI 121
            CF C   G+ ++F+      SF+E+V+ LA    + +    D    K ++    L  + 
Sbjct: 61  KCFGCGEAGNVITFVMKTKNFSFVEAVKYLADKVNITIDDNKDKYYAKNKEKYDKLYSMN 120

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             A  +F  +L +    +   Y  +RGI+   +  F LGYA D    L   ++ KG++E 
Sbjct: 121 VEAARYFFRNLDSN--SKAKKYFLDRGINQKTMRRFGLGYAKDDWRQLLSFMKSKGYTEL 178

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           ++IEAGL++  + +   YDRFRNR+IFP+   +G+VI FGGR L      KYLNSPET +
Sbjct: 179 ELIEAGLIVQKNKAV--YDRFRNRVIFPVFDYKGKVIGFGGRVL-DDSKPKYLNSPETKI 235

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KG NLY    A+             N    II+VEGYMD +SL Q G+ NVV+SLGTA
Sbjct: 236 FKKGTNLYGLNFAVK-----------NNIGDTIIIVEGYMDCISLHQYGINNVVASLGTA 284

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT+ Q +LL + + ++V+ +D D  G  A  +  D+       G  +  + +  G+DPD 
Sbjct: 285 LTKDQAKLLKRYASKVVISYDADTAGQAATLRGFDI---LREAGFDIKIIKIPDGKDPDE 341

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           F+R  GK AF +L+  ++ ++D    R  EN +    +   +    +   I  + D   +
Sbjct: 342 FVRKNGKEAFMRLVENAVSIIDYRINRAFENVNLKDSESVIKYVKDISEIIEEL-DPVEK 400

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y + I D+     Q      S   +    N    ++     + +       K      
Sbjct: 401 DVYIKKISDKTGIREQAIYDLISTDIQKSGNNIEKMNKNSNYGQNLYVESAHVKS----- 455

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             E  LL  +I H  I      +++         +K+++ + + F +      +     +
Sbjct: 456 --ERYLLRLMIEHKDIRSYIESKISADDLIMESHKKIYNIILN-FEDNLSSDLKSKFGFI 512

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             R           ++ +  +       +  +V+      +   K+FR L   K++I  +
Sbjct: 513 ESRCDDGESSSEIVKIEEQNIM-----LSENNVKDLVDDFITNIKKFR-LEESKKKIMSE 566

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           I  +  KG  ++T  LI  + E+  Q+  +
Sbjct: 567 IKGLEEKGLFDETIELIKRMEEIQNQLDNL 596


>gi|190150751|ref|YP_001969276.1| DNA primase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|307264153|ref|ZP_07545747.1| DNA primase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|189915882|gb|ACE62134.1| DNA primase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|306870527|gb|EFN02277.1| DNA primase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 580

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 176/618 (28%), Positives = 285/618 (46%), Gaps = 52/618 (8%)

Query: 1   MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M    PR FI DL+    I  LI   V   +        DY ACCPFH EK+PSF  + S
Sbjct: 1   MKGTIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQS 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKI 113
           K FY+CF C   G+ +SFL       F E+++ LAA+ G+ +P       D K +   K 
Sbjct: 56  KQFYHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVINRDGKPQASYKT 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + +L  L+E  + F+  +L      +   YL  RG+ +  I  F++G+A +S  S+    
Sbjct: 116 KRNLYELLEAISRFYQQNLTQDIPSQS--YLQNRGLSAEIIARFEIGFAYNSMDSVLRKF 173

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
                 E + +    +I  ++S   YD+FRNR++FPIR  RG+VIAFGGR +   E  KY
Sbjct: 174 GT-NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKY 231

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPE+  +HKG  LY  F AL           +  + + +++VEGYMDV++L Q GV N
Sbjct: 232 LNSPESATYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDN 281

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           VV+SLGTA T  Q++ +++++ +++ C+DGD  G  AA++A +  L +L  G ++ F+ L
Sbjct: 282 VVASLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFL 341

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             GEDPDSF+R  GK  FE  +  ++ L D L+         ++ + +++L       IN
Sbjct: 342 PDGEDPDSFVRAQGKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLIN 401

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            I  + LR Y    +  +L  L    +           +    +  +     +       
Sbjct: 402 RIPGEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVQTPQIKRTPM------- 454

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                        L+  L+ +P +++      A    +    + L   L     ++    
Sbjct: 455 -----------RLLIALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVS 502

Query: 534 PEEIHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKR 587
              + +   ++      ELL   +  V    + +   E        + +   + L    R
Sbjct: 503 MGALLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDR 562

Query: 588 FRLLS-RQKEEIEKQIAQ 604
              LS  +K+E+   IAQ
Sbjct: 563 SLGLSAEEKQELVMLIAQ 580


>gi|303252482|ref|ZP_07338646.1| DNA primase [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307248517|ref|ZP_07530535.1| DNA primase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302648683|gb|EFL78875.1| DNA primase [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306854993|gb|EFM87178.1| DNA primase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 580

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 177/618 (28%), Positives = 285/618 (46%), Gaps = 52/618 (8%)

Query: 1   MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M    PR FI DL+    I  LI   V   +        DY ACCPFH EK+PSF  + S
Sbjct: 1   MKGTIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQS 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKI 113
           K FY+CF C   G+ +SFL       F E+++ LAA+ G+ +P       D K +   K 
Sbjct: 56  KQFYHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVINRDGKPQASYKT 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + +L  L+E  + F+  +L      +   YL  RG+ +  I  F++G+A +S  S+    
Sbjct: 116 KRNLYELLEAISRFYQQNLTQDIPSQS--YLQNRGLSAEIIARFEIGFAYNSMDSVLRKF 173

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
                 E + +    +I  ++S   YD+FRNR++FPIR  RG+VIAFGGR +   E  KY
Sbjct: 174 GT-NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKY 231

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPE+  +HKG  LY  F AL           +  + + +++VEGYMDV++L Q GV N
Sbjct: 232 LNSPESATYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDN 281

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           VV+SLGTA T  Q++ +++++ +++ C+DGD  G  AA++A +  L +L  G ++ F+ L
Sbjct: 282 VVASLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFL 341

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             GEDPDSF+R  GK  FE  +  ++ L D L+         ++ + +++L       IN
Sbjct: 342 PDGEDPDSFVRTQGKQGFEAYLQNTMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLIN 401

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            I  + LR Y    +  +L  L    +           +    R  +     +       
Sbjct: 402 RIPGEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVRTPQIKRTPM------- 454

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                        L+  L+ +P +++      A    +    + L   L     ++    
Sbjct: 455 -----------RLLIALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVS 502

Query: 534 PEEIHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKR 587
              + +   ++      ELL   +  V    + +   E        + +   + L    R
Sbjct: 503 MGALLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDR 562

Query: 588 FRLLS-RQKEEIEKQIAQ 604
              LS  +K+E+   IAQ
Sbjct: 563 SLGLSAEEKQELVMLIAQ 580


>gi|289578735|ref|YP_003477362.1| DNA primase [Thermoanaerobacter italicus Ab9]
 gi|289528448|gb|ADD02800.1| DNA primase [Thermoanaerobacter italicus Ab9]
          Length = 601

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 157/635 (24%), Positives = 294/635 (46%), Gaps = 43/635 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y R+ I+ ++    I ++I +YV+  +        ++   CPFH EKTPSF  +  K 
Sbjct: 1   MAYSREMIERVIEANDIIDVISEYVELKKAGK-----EFKGLCPFHREKTPSFMVSQEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--DLI 118
            Y+CF C+  G+ ++F+  +   +F E+++ LA   G+ L  V+   ++ +K +   ++ 
Sbjct: 56  VYHCFGCNASGNVVTFIMDIENLTFKEAIEFLADRVGITLEEVELTEKEYQKKKLIGEIC 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           ++ ++A  +F++ L +   ++   Y+ +RG+    I+ F +GY+P     L   L++KG+
Sbjct: 116 KVNKLAAVYFYNKLFSEEGRQALAYIRKRGLTEATIKKFGIGYSPPEGNGLLNFLKEKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +E  +++AGLL     +   YDRFRNR++FPI   +G VI FGGR +      KYLN+PE
Sbjct: 176 TESFLLKAGLLSQ--KNNRYYDRFRNRVMFPIIDLKGNVIGFGGRAI-DDSLPKYLNTPE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F KGK L+    A                    I+VEGYMD +SL QAG+   V+SL
Sbjct: 233 TEVFKKGKTLFAINFAKK------------TQQDKFIIVEGYMDAISLHQAGIDCAVASL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE Q +L+ +    +++ +D D+ G+ AA + +D+          +  + + +G+D
Sbjct: 281 GTALTEDQAKLIKRYKRNVIIAYDADEAGVSAAIRGLDI---LDELNLNIKVLTIPQGKD 337

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AF +LI  +  L++   K   +N   + P +R      +   I ++ D+
Sbjct: 338 PDEFIKKEGVEAFNQLIENAESLIEFKAKVYRKNLDLDNPQDRIVYVKKIAKDIANLSDE 397

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y  ++    Q       TE S +     +  +       + R    S  K     
Sbjct: 398 VKREVYISSVAKVAQIPENAVRTEVSRFVNRKIRKNQKNMYMAGNIRHNIYSSNKISP-- 455

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E  L+  ++    + +   + +     +N +L+ ++  + S     +     +I 
Sbjct: 456 -----EKYLIALIMYDNDLYKRIKETITPDMLENVKLRPVFEEIMSRLEVGEKVQINDIV 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L E         + +   ++            ++ +     +        L+ ++E I
Sbjct: 511 YLLQEENLISEFNDIIKAFYES-----------ENITEQAADDIINKILINSLAVKRENI 559

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++ I +    G+ EK   L+  L     ++ +I++
Sbjct: 560 KRAINEAHMLGDIEKERQLLIELQNCEKEMLKIKN 594


>gi|313496754|gb|ADR58120.1| DnaG_2 [Pseudomonas putida BIRD-1]
          Length = 558

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 155/448 (34%), Positives = 238/448 (53%), Gaps = 20/448 (4%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DL+  + I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLINRLDIVDVVSSRVQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P    +   + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREQGRRDQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           ++ A++F+  +L++    K    YL  RG+       F LG+AP    +L +HL      
Sbjct: 120 LDAASEFYRQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQ 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +I+AGLLI+   S   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPET
Sbjct: 180 QKVMIDAGLLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  + +          +   II+VEGYMDV++L Q G++N V++LG
Sbjct: 239 PVFHKGQELYGLYEARKHNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA +E  L+ L+++ P ++ CFDGD  G +AA++A++  L +L  G R  F+ L  GEDP
Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           DS +R  G  AF   +   S PL D  +++        + + +A +       I  I   
Sbjct: 349 DSLVRAEGTDAFMARINQHSQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIPGA 408

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGY 446
            LR      +++      Q+        
Sbjct: 409 NLRQLMRNRLKEITGLDPQQVEQLAQQA 436


>gi|260438483|ref|ZP_05792299.1| DNA primase [Butyrivibrio crossotus DSM 2876]
 gi|292809072|gb|EFF68277.1| DNA primase [Butyrivibrio crossotus DSM 2876]
          Length = 583

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 147/634 (23%), Positives = 273/634 (43%), Gaps = 60/634 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P D ++++     I +++   +   ++ +      Y+  CPFH+EK+PSF  + +K 
Sbjct: 1   MYIPDDLVEEIRSRNDIVDIVSSRIKLQKKGS-----SYFGLCPFHNEKSPSFSVSPNKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            +YCF C   G+  SFL      +F E+++ LA  AG+ LP   +  +   +  ++  + 
Sbjct: 56  MFYCFGCGEGGNVFSFLMKYDNLTFSEALKELADRAGIELPDVRMSAEERNRSDLKNTVY 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + + A  ++H+ L+         Y ++R + +  I+ F LG +      L  +++ KG+
Sbjct: 116 DINKEAARYYHYLLETETGNNARAYFNKRELSNDTIKSFGLGVSGIKSDDLYHYIKNKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           ++ ++ E+GL I   +   ++DRFRNR++FPI ++  +VI FGGR + +G+  KYLNSPE
Sbjct: 176 NDGQMKESGLFI--YDEKGAHDRFRNRVMFPIINTNNKVIGFGGRVMGEGQP-KYLNSPE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TI+F KG+NLY    A N  +            + II+ EGYMDV+S+ QAG    V+SL
Sbjct: 233 TIVFDKGRNLYGLNAAKNSRK------------NNIIICEGYMDVISMHQAGFNQAVASL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT+ Q  L+ +    +++C+D D PG +A+ +AI +       G R   + +   +D
Sbjct: 281 GTALTDGQANLIKRYVKDVLVCYDSDGPGTKASLRAIGI---FRNAGLRTKVINMEPCKD 337

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            D FI+ YG  AF+K I ++        +    N   N P  +      +   +   +++
Sbjct: 338 ADEFIKTYGADAFQKRIDDAENSFLYEVRILERNYDLNDPAGKTSFFNEVSVKLASFEEE 397

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+  +            + Y         +   K            K +   
Sbjct: 398 IERNNYIEAVASKYFVSADSLRKLVAKYAATVAGIKVNGIPKRE----------KREKEN 447

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LL  + +   I ++    ++   +     + +   +F +      F P  I 
Sbjct: 448 GIDKSQRMLLTFIADDTGIYKKIADYISPEDFSEGIYRNVAEIMFENL-SNGTFNPGAIL 506

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                      + ++              +A+  D  +    AL + KR           
Sbjct: 507 NYFNGDDEHNEVARILNTNI------LEEDADNKDREKAVNDALLIIKR----------- 549

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
                   +     +T   I  L  +  +  +++
Sbjct: 550 -------NSLEMKSRTTTDIMELQNIIKEQAKLK 576


>gi|52425816|ref|YP_088953.1| DNA primase [Mannheimia succiniciproducens MBEL55E]
 gi|52307868|gb|AAU38368.1| DnaG protein [Mannheimia succiniciproducens MBEL55E]
          Length = 588

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 186/628 (29%), Positives = 295/628 (46%), Gaps = 58/628 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI D+L    I +++   V   +  TN    +Y ACCPFH EKTPSF  + +K FY
Sbjct: 5   IPRSFINDILAKADIVDVVNSRVKLKKAGTN----NYQACCPFHHEKTPSFTVSKNKQFY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK------IQTD 116
           +CF C   G+ + FL       F+E+V+ LA   G+ +P      +K EK       + +
Sbjct: 61  HCFGCGAHGNAIGFLMEYDKLEFLEAVEELANFLGLEVPREAGSDKKFEKSQPHYQNKRN 120

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L+    +F+   L          YL +RG+    IE F +G+ PDS  ++       
Sbjct: 121 LYELMHDIAEFYRQQL--PHSIPAQAYLQKRGLSEEVIERFAIGFVPDSFNAVLRRFGTT 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+ + G+L   D     YDRFRNR++FPIR  RG+ IAFGGR L   E  KYLNS
Sbjct: 179 KAEQQKLFDLGMLSRNDRGDI-YDRFRNRIMFPIRDRRGRTIAFGGRVL-TDERPKYLNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET+ +HKG  +Y  + AL             +S   +++VEGYMDV++L Q GV   V+
Sbjct: 237 PETLTYHKGNEIYGLYEALQI----------NDSPEMLLVVEGYMDVVALAQFGVNYAVA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGTA T  Q++L+++ S +IV C+DGD  G  AA++A++  L +L  G ++ FV L  G
Sbjct: 287 SLGTATTAEQIQLIFRASEQIVCCYDGDRAGREAAWRALENALPYLQDGRQLKFVFLPDG 346

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD++IR YGK AFE  I ++L L D ++    E    ++ + +++L       I  I 
Sbjct: 347 EDPDTYIRQYGKDAFEDYIQKALSLSDFMFTHLIEQVDLSSKEGKSKLAALAVPLIKRIP 406

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            Q LR Y    +  +L  + Q  +           + A  +        +          
Sbjct: 407 GQMLRLYLRNILAQKLGIIDQTQLESLIPSKIEQPEAAIEKSPAVKRTPM---------- 456

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     L+  L+ +P + Q  Y  L  ++  N    +L+  L     +       +
Sbjct: 457 --------RLLIGLLLQNPQLAQLDYD-LEPLKSLNEPGFELFYALTKLCRDNMGITMGQ 507

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-ALALYKRFRLLSRQK 595
           I +   +  + + L+ L        +W          +++ + +  L LY RF       
Sbjct: 508 ILEYWRDSQYSKPLEILA-------IWDHL--VTDDKIQETFLETLLYLYVRFTD----- 553

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHE 623
           + IE+ IA+  + G + +    ++ L  
Sbjct: 554 QNIERLIAKDRSTGLSPEEKQELAQLLA 581


>gi|113868684|ref|YP_727173.1| DNA primase [Ralstonia eutropha H16]
 gi|113527460|emb|CAJ93805.1| DNA primase [Ralstonia eutropha H16]
          Length = 603

 Score =  358 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 173/642 (26%), Positives = 285/642 (44%), Gaps = 57/642 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI+DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPQSFIQDLLNRVDIVDVVGKYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-----PKIEKKEKIQTDL 117
           +CF C   G  + FL    G S+ E+V+ LA   G+ +P         +  +++     L
Sbjct: 57  HCFGCGAHGSAIGFLMEFSGQSYPEAVRELAQSVGMSVPEERDRLPPGQRAEQQARSVAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---SLREHLR 174
              +  ATDF+   L++    +   YL  RG+       F LGYAPD      ++    R
Sbjct: 117 SDAMTRATDFYRRQLRS--APQAIQYLKGRGLTGEIAANFGLGYAPDDWQGLEAVFGSYR 174

Query: 175 QKGFSEEKIIEAGL----LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
               S   +    L      D D     YDRFR+R++FPIR+++G VI FGGR + +GE 
Sbjct: 175 DDNVSAPLVECGLLIESDKRDADGKPRRYDRFRDRIMFPIRNTKGAVIGFGGRVMGQGEP 234

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF KG  LY  F A + ++           + ++++VEGYMDV++L Q G
Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARHAIR----------ETGYVLVVEGYMDVVALAQLG 283

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
             N V++LGTA T   ++ L + +  +V  FDGD  G RAA +A++  L H+     + F
Sbjct: 284 FANAVATLGTACTPVHVQKLLRQTDAVVFSFDGDSAGRRAARRALEACLPHVADNKTIRF 343

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           + L    DPDS++R  G  AF   +  ++PL   L +  TE+     P+ RA  +   K 
Sbjct: 344 LFLPAEHDPDSYVREEGTEAFATQVRNAMPLSRFLLQSVTEDLDLRQPEGRARAQYEAKP 403

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  +    LR    + + D         I    G      +  R    +  ++R   + 
Sbjct: 404 LLQAMPAGGLRLQIVRELADATG-TTPAEIEAICGLRSDPARVGRFAQPRPRTRRQAPTG 462

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY--DNNELQKLWSFLFSDFVE 528
           L            E  ++  L+ +PA+     ++   +    ++++ + L   + +    
Sbjct: 463 L------------EQRVIQLLMCYPALSARLDEDARALLLGGESSDSEVLAHLVEACDSV 510

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
           Q         + L +  + E+       V    +  A     I D      + LA     
Sbjct: 511 QGEVNFAAFSEHLAQSPYAEVYAVARAAVLREEIEEAP---AIQDFDAAITKLLA----- 562

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629
             L R+ + ++ ++   TA    E     +  L  E+H +  
Sbjct: 563 EPLRRELDGLQAEVVAGTA---DEAAKQRMRWLVGEIHRRRQ 601


>gi|270291313|ref|ZP_06197535.1| DNA primase [Pediococcus acidilactici 7_4]
 gi|304385063|ref|ZP_07367409.1| DNA primase [Pediococcus acidilactici DSM 20284]
 gi|270280159|gb|EFA25995.1| DNA primase [Pediococcus acidilactici 7_4]
 gi|304329257|gb|EFL96477.1| DNA primase [Pediococcus acidilactici DSM 20284]
          Length = 618

 Score =  358 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 161/644 (25%), Positives = 295/644 (45%), Gaps = 43/644 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I ++   + I +++ +YV   +   N      +  CPFHDEKTPSF  ++ K  +
Sbjct: 5   IPEEVIDNVRSAVNIVDVVSRYVQLRKAGKNL-----FGICPFHDEKTPSFSVSEDKQIF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK---EKIQTDLIR 119
           +CFSC   G+   FL  L   SF E+V+R+A    VPL     K   K      Q+++I 
Sbjct: 60  HCFSCGRGGNVFKFLMDLEKISFPEAVRRVAEFGNVPLDDKYVKKSPKSAYSATQSEMIG 119

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L E A + +HH L      ++   YL +RGI    ++ F LG+AP  +  L   L+++  
Sbjct: 120 LYEKAAELYHHVLVNTQLGEKALAYLKKRGITEADMQDFDLGFAPADQDLLLSFLKEQQI 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
            ++++ ++GL I+     +  DRF NR++FPI+ + G+++AF GR+L K +   KYLNSP
Sbjct: 180 DQKQMQDSGLFIET-ADGSLKDRFFNRIMFPIKDNNGKIVAFSGRSLVKDDQHPKYLNSP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +F+KGK LYNF  A   +               +IL EG+MDV++  +A V N +++
Sbjct: 239 ETSIFNKGKVLYNFSQARPEI----------VQKKTVILYEGFMDVIAAHRAQVANGIAT 288

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT+LTE  +R L +++ R+V+CFDGD+PG RA  KAI L+        +++ + +    
Sbjct: 289 MGTSLTEDHVRALKRVASRVVICFDGDEPGQRAIAKAIALIK--QTSDLQISVIFIPDNR 346

Query: 358 DPDSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD ++R  G  +F+KL+ ++       L K +    +    +++ E        I  + 
Sbjct: 347 DPDEYVRDKGVESFQKLMNQTGESSTAFLLKFDRMGLNLANENDQLEYLKKALQRIGELN 406

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR-------DQKGPSQRLMQS 469
           D   +  Y   + +      +    +          +   +             +  ++ 
Sbjct: 407 DALEQDLYLNQLAEEFSIDKRDLKNQLRESVADRIAHTPRQFDPGPAPAPPPTFENQVEK 466

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +    K      + +  LL   +NH  +  +  Q L D  + N +L+ ++        + 
Sbjct: 467 TENTPKKLSSVDISQYRLLARALNHHDVWLK-LQSLPDFYFPNEQLETIYMLAGGYLAKN 525

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           + +   +    L E     ++  ++               +     +  +  ++L K   
Sbjct: 526 QEYDAADFMDYLKEPELQSVVANIESI-----------NLSPDYTEEEIEDYISLIKDVA 574

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            LS Q  +++  + + T  G  E    L   L  ++ +  Q+++
Sbjct: 575 PLSEQISKVKSDLNEATRLGNQELQQQLTLKLISLYQKQQQLQN 618


>gi|303250976|ref|ZP_07337165.1| DNA primase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307253123|ref|ZP_07535004.1| DNA primase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|302650193|gb|EFL80360.1| DNA primase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306859417|gb|EFM91449.1| DNA primase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 580

 Score =  358 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 176/615 (28%), Positives = 283/615 (46%), Gaps = 50/615 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DL+    I  LI   V   +        DY ACCPFH EK+PSF  + SK F
Sbjct: 4   SIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQSKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       F E+++ LAA+ G+ +P       D K +   K + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVMARDGKPQASYKTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L+E  + F+  +L      +   YL  RG+    I  F++G+A +S  S+       
Sbjct: 119 LYELLEAISRFYQQNLTQDIPSQS--YLQSRGLSPEIIARFEIGFAYNSMDSVLRKFGT- 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              E + +    +I  ++S   YD+FRNR++FPIR  RG+VIAFGGR +   E  KYLNS
Sbjct: 176 NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+  +HKG  LY  F AL           +  + + +++VEGYMDV++L Q GV NVV+
Sbjct: 235 PESATYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGTA T  Q++ +++++ +++ C+DGD  G  AA++A +  L +L  G ++ F+ L  G
Sbjct: 285 SLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDSF+R  GK  FE  +  ++ L D L+         ++ + +++L       IN I 
Sbjct: 345 EDPDSFVRAQGKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLINRIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR Y    +  +L  L    +           +    R  +     +          
Sbjct: 405 GEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVRTPQIKRTPM---------- 454

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     L   L+ +P +++      A    +    + L   L     ++       
Sbjct: 455 --------RLLTALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVSMGA 505

Query: 537 IHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRL 590
           + +   ++      ELL   +  V    + +   E        + +   + L    R   
Sbjct: 506 LLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDRSLG 565

Query: 591 LS-RQKEEIEKQIAQ 604
           LS  +K+E+   IAQ
Sbjct: 566 LSAEEKQELVMLIAQ 580


>gi|53802940|ref|YP_115382.1| DNA primase [Methylococcus capsulatus str. Bath]
 gi|53756701|gb|AAU90992.1| DNA primase [Methylococcus capsulatus str. Bath]
          Length = 571

 Score =  358 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 175/615 (28%), Positives = 281/615 (45%), Gaps = 58/615 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR+FI DL+  I I +LI   V   +  +      + A CPFH EKTPSF  +  K F
Sbjct: 4   RLPREFIDDLIARIDIVDLIDARVPLKKSGS-----SFLARCPFHSEKTPSFSVSREKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIR 119
           Y+CF C   G+ +SFL      SF E+++ LA +AG+ LP     P       +   +  
Sbjct: 59  YHCFGCGAHGNAISFLMDYEHQSFPEALETLATLAGIDLPKAMATPGANPSASL-QPVYD 117

Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           ++E A  F+   L+ +    +   YL +RG+       ++LGYAP    SL        +
Sbjct: 118 ILERAAGFYIQQLRDHPDAGQAKIYLRKRGLTGEIARRYRLGYAPPGWNSL-----PADW 172

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
               +I++GL+I+   S   YDRFR+R++FPIR  RG+VI FGGRTL   ++ KYLNSPE
Sbjct: 173 PRTLLIQSGLVIEKGRSC--YDRFRHRIMFPIRDRRGRVIGFGGRTL-GDDTPKYLNSPE 229

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F KGK LY     L    +  R          I++VEGY+DV++L Q G+ + V++L
Sbjct: 230 TEVFRKGKELYGLHELLESTPRPRR----------ILVVEGYLDVIALAQHGINDAVATL 279

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ +   + LL++ +  IV CFDGD  G +AA++A++  L  L  G  + F+ L  GED
Sbjct: 280 GTSTSAEHVHLLFRFTREIVFCFDGDAAGHKAAWRALEASLPLLQEGREIRFIHLPAGED 339

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS IR  G+ AFE  I ++ P  D L++   ++    + + RA L+   +  ++ +   
Sbjct: 340 PDSLIRKEGREAFESRIGQASPFSDYLFRTLQKDLDLRSIEGRATLQKQARELLDRLPVG 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R    Q + +                               P+ + +++ L       
Sbjct: 400 AFRTLMEQRLSEFTGV-----------------------APPAPASKSLENRLGHPSGQV 436

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +P      ++  L++ P + +    E+     +N     L + +      +       + 
Sbjct: 437 RPPSAWRNVVTLLLHRPRLAKLISPEIRARLIENPRAGPLIARILEYTDLRDTPTAGMLF 496

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           + L E   GEL + L +          T E  +          +    R   LS+  E  
Sbjct: 497 EHLRETPEGELARNLLKPGL------LTPEEGMEREFVDALDRVRALLRDERLSQLIE-- 548

Query: 599 EKQIAQVTAKGEAEK 613
           + + AQ+T     E 
Sbjct: 549 KSKAAQLTDSEREEL 563


>gi|261377613|ref|ZP_05982186.1| DNA primase [Neisseria cinerea ATCC 14685]
 gi|269146366|gb|EEZ72784.1| DNA primase [Neisseria cinerea ATCC 14685]
          Length = 584

 Score =  358 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 180/612 (29%), Positives = 298/612 (48%), Gaps = 42/612 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL  + I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK   +     YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLK--FNPTAKAYLDKRGLSAEVIVHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++  + NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGINLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + +  K P   + Q  ++   
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLARLLGQEA--PKRHVKQKSYKLPPISVKQPVML--- 454

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                +L +  +   LIN P        +L D    + +   L +   S           
Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYLVLDGDFACLANLAESIKSHAAVPETA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + ++      +   ++++E +  + + G ++ L   K  ++ + ++
Sbjct: 507 QVLEYMRGSPYEETINRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIEALKQ 566

Query: 596 EEIEKQIAQVTA 607
           + ++  +++   
Sbjct: 567 KSLKSGLSESEK 578


>gi|237746701|ref|ZP_04577181.1| DNA primase [Oxalobacter formigenes HOxBLS]
 gi|229378052|gb|EEO28143.1| DNA primase [Oxalobacter formigenes HOxBLS]
          Length = 603

 Score =  358 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 183/635 (28%), Positives = 290/635 (45%), Gaps = 60/635 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI+DLL  I I  ++G  V   +   N     +   CPFH EKTPSF  +  K FY
Sbjct: 2   IPQSFIQDLLNRIDIVEVVGNRVQLKKAGAN-----FLGLCPFHTEKTPSFTVSPVKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD-----L 117
           +CF C   G  ++FL    G SF+E+V+ LA  AG+ +P  D ++  +++ Q       L
Sbjct: 57  HCFGCGRNGSAITFLMEHSGLSFVEAVEELAQGAGMTVPRDDTRVSPEQRAQKQAKTLAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             ++  A+ ++   LK +       YL +RG+       F LGYAP +R SL+       
Sbjct: 117 TEVMTQASRYYRQQLKQSEAA--IAYLKKRGVSGEMAFRFGLGYAPATRDSLKNGFENYR 174

Query: 178 FSE-----EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
             E       I +        +    YDRFR+R++FPIR++RGQVIAFGGR L KGE  K
Sbjct: 175 ADELVEAGLVIEKHEDDRAVVSGERRYDRFRDRIMFPIRNTRGQVIAFGGRILEKGEP-K 233

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPET LF KG  LY  F A   ++           + ++++VEGYMDV++L Q G  
Sbjct: 234 YLNSPETPLFQKGSELYGLFEARQAIR----------EAGYVLVVEGYMDVVALAQLGFP 283

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
             V++LGTA T  Q++ L + + RIV  FDGD+ G  AA +A++  L  +     V F+ 
Sbjct: 284 QSVATLGTACTSAQVQKLMRQTDRIVFSFDGDNAGKGAARRALEASLPLVSDTKSVAFLF 343

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L    DPDS++R YG  AFEK +  ++PL + + +        NT + RA  +   K   
Sbjct: 344 LPPEHDPDSYVREYGAGAFEKQVEGAMPLSEFMLQELVAGNDMNTLEGRARAQHKAKPWC 403

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    LR      I  +L Q+ Q    E   +    +  AR R ++    R     L 
Sbjct: 404 QAMAPSALRL----QIMRKLGQITQTPDDELEAFLEVARPVARSRRREARLPRPPVVGL- 458

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKY 531
                      E  ++  L+ +P       + ++  I   + +   L   + S   E   
Sbjct: 459 -----------ERQVMRLLLMYPQFAARLSEADIGAIVDFSPDKGDLLKTVLSAIRELGE 507

Query: 532 ---------------FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
                             E++     +R + + L  ++       + S    + +  +  
Sbjct: 508 QGSYATLVEYLRSGKVDCEQLVHETLDREYEQELALMELVGAVRQIRSRVLASEMEKLFS 567

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
                    +R+  L +Q+EE++K++AQ   + ++
Sbjct: 568 SGLVGEEENRRYYELKKQQEELKKEMAQENLREKS 602


>gi|308176718|ref|YP_003916124.1| DNA primase [Arthrobacter arilaitensis Re117]
 gi|307744181|emb|CBT75153.1| DNA primase [Arthrobacter arilaitensis Re117]
          Length = 627

 Score =  358 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 149/650 (22%), Positives = 259/650 (39%), Gaps = 45/650 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ I ++   + +  ++  YV           G Y   CPFHDE++PSFH     G +
Sbjct: 5   IKREDIDEVRNRVDLREVVESYVTLKSAG----IGSYKGLCPFHDERSPSFHIRPQLGTF 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119
           +CF C   GD ++F+  +   SF E+V+ LAA     L   D     + +    +  L+ 
Sbjct: 61  HCFGCGESGDVIAFIQKMDHSSFTETVELLAARINYELHYEDGGPGPRREDYGKRQRLVD 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             +VA +FF   L          +L  RG D      F +GYAP    +L +HLR KGF+
Sbjct: 121 AHKVAEEFFRAQLATEEGSAGREFLAGRGFDPEVTAQFSVGYAPKGWDALLKHLRSKGFA 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           ++++   G+  +G+     YDRFR R+++PIR   G  I FG R L + +   KYLN+PE
Sbjct: 181 DDELKLTGMFSEGNR--GIYDRFRGRVMWPIRDLSGATIGFGARKLYEDDQGPKYLNTPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A   + KS            I++VEGY DV++   AG+   V++ 
Sbjct: 239 TSLYKKSQVLYGLDLAKKQISKS----------RQIVVVEGYTDVMACHLAGITTAVATC 288

Query: 299 GTALTEYQLRLLWK------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           GTA     +++  +          ++  FDGD  G +AA +A +     +    +    +
Sbjct: 289 GTAFGTDHIKIARRLLQDDGTGGEVIFTFDGDAAGQKAALRAFEEDQRFIA---QTYVCV 345

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP       G  A  +LI    PL +   + E +  + NT + R +        +
Sbjct: 346 EPSGADPCDLRLHRGDEAVRELIELKRPLFEFAIRAELKKFNLNTVEGRVQALRQTAPIV 405

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR------- 465
             IKD  +R  Y++ +   L    +          +  +       Q    Q        
Sbjct: 406 AQIKDSAIRPAYARELAGWLGMNNEDVNRSVGASIKRARLPKNAEAQAPRPQPGEAEQAL 465

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFS 524
               +  +          E   L  +I  P  +  EQ+Q   + R+       +   + +
Sbjct: 466 PAAPAFERPDHRDPVMRLERQALEVVIQQPQRLKDEQWQAFYEARFLAPAHSAVHDGIVA 525

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                         + + +    E+ +QL   V +  + S    A+       Y   +  
Sbjct: 526 ASS--AGASATSWVEVIRD----EVPEQLRSFVSELAVTSIP--ASDEHSLNRYCADIIN 577

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                 ++ +K E+  ++ +     E E+ A +   L E+ ++   +   
Sbjct: 578 GLIELQITHRKAELIGRLQRAEMMPEGEEYAQINRELMELEMRRRILRGT 627


>gi|253733188|ref|ZP_04867353.1| DNA primase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728728|gb|EES97457.1| DNA primase [Staphylococcus aureus subsp. aureus TCH130]
          Length = 605

 Score =  358 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 150/636 (23%), Positives = 263/636 (41%), Gaps = 40/636 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +         +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----WKKNARHRDQKGPSQRLMQSSLV 472
              L+      +        ++   E            +      D+ G         + 
Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQFNQAPANYYPEDEYGGYDEYGGYIEPEPIGMA 461

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           +     +    E A L  L+         Y+ +    + N   + ++  L   + E   +
Sbjct: 462 QFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQY 521

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +  Q +      E L  L++            +    +    Y   +    +     
Sbjct: 522 NISDAVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET--- 570

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
              E +  ++ + T  G+ E     +  +   + + 
Sbjct: 571 --IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 604


>gi|148268046|ref|YP_001246989.1| DNA primase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394114|ref|YP_001316789.1| DNA primase [Staphylococcus aureus subsp. aureus JH1]
 gi|257793638|ref|ZP_05642617.1| DNA primase [Staphylococcus aureus A9781]
 gi|258420134|ref|ZP_05683089.1| DNA primase [Staphylococcus aureus A9719]
 gi|295406685|ref|ZP_06816490.1| DNA primase [Staphylococcus aureus A8819]
 gi|297245733|ref|ZP_06929598.1| DNA primase [Staphylococcus aureus A8796]
 gi|147741115|gb|ABQ49413.1| DNA primase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946566|gb|ABR52502.1| DNA primase [Staphylococcus aureus subsp. aureus JH1]
 gi|257787610|gb|EEV25950.1| DNA primase [Staphylococcus aureus A9781]
 gi|257843845|gb|EEV68239.1| DNA primase [Staphylococcus aureus A9719]
 gi|294968432|gb|EFG44456.1| DNA primase [Staphylococcus aureus A8819]
 gi|297177384|gb|EFH36636.1| DNA primase [Staphylococcus aureus A8796]
 gi|315129840|gb|EFT85830.1| DNA primase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727678|gb|EGG64134.1| DNA primase [Staphylococcus aureus subsp. aureus 21172]
          Length = 605

 Score =  358 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 149/636 (23%), Positives = 263/636 (41%), Gaps = 40/636 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +         +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL +RG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQDRGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----WKKNARHRDQKGPSQRLMQSSLV 472
              L+      +        ++   E            +      D+ G         + 
Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQFNQAPANYYPEDEYGGYDEYGGYIEPEPIGMA 461

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           +     +    E A L  L+         Y+ +    + N   + ++  L   + E   +
Sbjct: 462 QFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQY 521

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +  Q +      E L  L++            +    +    Y   +    +     
Sbjct: 522 NISDAVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET--- 570

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
              E +  ++ + T  G+ E     +  +   + + 
Sbjct: 571 --IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 604


>gi|32034494|ref|ZP_00134666.1| COG0358: DNA primase (bacterial type) [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208938|ref|YP_001054163.1| DNA primase [Actinobacillus pleuropneumoniae L20]
 gi|126097730|gb|ABN74558.1| DNA primase [Actinobacillus pleuropneumoniae serovar 5b str. L20]
          Length = 580

 Score =  358 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 175/618 (28%), Positives = 284/618 (45%), Gaps = 52/618 (8%)

Query: 1   MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M    P  FI DL+    I  LI   V   +        DY ACCPFH EK+PSF  + S
Sbjct: 1   MKGTIPSSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQS 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKI 113
           K FY+CF C   G+ +SFL       F E+++ LAA+ G+ +P       D K +   K 
Sbjct: 56  KQFYHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVINRDGKPQASYKT 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + +L  L+E  + F+  +L      +   YL  RG+ +  I  F++G+A +S  S+    
Sbjct: 116 KRNLYELLEAISRFYQQNLTQDIPSQS--YLQNRGLSAEIIARFEIGFAYNSMDSVLRKF 173

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
                 E + +    +I  ++S   YD+FRNR++FPIR  RG+VIAFGGR +   E  KY
Sbjct: 174 GT-NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKY 231

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPE+  +HKG  LY  F AL           +  + + +++VEGYMDV++L Q GV N
Sbjct: 232 LNSPESATYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDN 281

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           VV+SLGTA T  Q++ +++++ +++ C+DGD  G  AA++A +  L +L  G ++ F+ L
Sbjct: 282 VVASLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFL 341

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             GEDPDSF+R  GK  FE  +  ++ L D L+         ++ + +++L       IN
Sbjct: 342 PDGEDPDSFVRAQGKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLIN 401

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            I  + LR Y    +  +L  L    +           +    +  +     +       
Sbjct: 402 RIPGEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVQTPQIKRTPM------- 454

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                        L+  L+ +P +++      A    +    + L   L     ++    
Sbjct: 455 -----------RLLIALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVS 502

Query: 534 PEEIHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKR 587
              + +   ++      ELL   +  V    + +   E        + +   + L    R
Sbjct: 503 MGALLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDR 562

Query: 588 FRLLS-RQKEEIEKQIAQ 604
              LS  +K+E+   IAQ
Sbjct: 563 SLGLSAEEKQELVMLIAQ 580


>gi|237785263|ref|YP_002905968.1| DNA primase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758175|gb|ACR17425.1| DNA primase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 645

 Score =  358 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 133/650 (20%), Positives = 243/650 (37%), Gaps = 48/650 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +    PI  ++G+YV      +           PF DEKTPSFH   +KG+
Sbjct: 5   RIPESDIDAIRERTPIEEVVGEYVQLKPAGS----DSLKGLSPFKDEKTPSFHVRPNKGY 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           Y+CFS    GD  SFL  +   SF E+V++ A   G  +        ++E+   +  L+ 
Sbjct: 61  YHCFSTGKGGDVFSFLMEMEQVSFPEAVEQCAERIGYTINYQGGGPGRREEPGTRQRLVA 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           + +   +F+   L          +L +RG      E F  GYAP    +L + L +KGF 
Sbjct: 121 INKATQEFYREHLDTDEAAPARQFLLDRGFSQDHAEQFGCGYAPGGWDTLTKFLLRKGFD 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
            +++  AG+           DRF  RL +PIR++   VI FG R L   +   KY+N+PE
Sbjct: 181 VKELEAAGVTSQ--GRRGPIDRFHRRLTWPIRNTANDVIGFGARKLFDDDKLGKYMNTPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T+L+ K K L+    A   +                ++VEGY DV+++  AGV   V++ 
Sbjct: 239 TLLYKKSKVLFGIDQAKKNIA----------ERHQAVIVEGYTDVMAMHAAGVTTAVAAC 288

Query: 299 GTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA     L+++             ++  FDGD+ G +AA +A +        G     V
Sbjct: 289 GTAFGADHLQMVRRLMLDDSHFRGEMIYTFDGDEAGQKAAMRAFEGNQEF--LGKSFVSV 346

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
               G+DP       G  A   L++  +P+V+ + +    +   +T + R +    +   
Sbjct: 347 -APNGQDPCDLRLSGGDAAVRDLVMSRIPMVEFVVRTTLASFDLHTTEGRLQAMEAVAPA 405

Query: 412 INHIKDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL---- 466
           +  +KD  L+  Y++ +   L                R  + +   R +    +      
Sbjct: 406 VASVKDTTLQKAYARKLSGWLGWDDVSDVEAAVRRAARKPQSSGLKRGRVRQQRDTWSVK 465

Query: 467 ----------MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
                      Q    +          E   L   +  PA   E +  L    + +   +
Sbjct: 466 SPAASGPQGSTQPRFTRPNPRNGELAGEREALKIALQEPAAAAELFDVLPAESFRHPTYR 525

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
           ++   +            E        +    L + +   +    +          +  +
Sbjct: 526 EVSEGIRRAGGCAAAADVESGGNSWVTKVIENLPQPMGESMVTELM--VEPIHYEGEDME 583

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            + ++  +  +   +  Q  E++  + ++    +  +   L   L  +  
Sbjct: 584 WFVRSTMVRLQAVWVGNQIAELKSTLERLRPSDD--EYNNLFGDLVALEQ 631


>gi|239993654|ref|ZP_04714178.1| DNA primase [Alteromonas macleodii ATCC 27126]
          Length = 592

 Score =  358 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 162/628 (25%), Positives = 281/628 (44%), Gaps = 46/628 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PRDFI DLL    +  ++   V   +   N     Y ACCPFH+EK+PSF  +  K F
Sbjct: 4   KIPRDFIDDLLSRTDVVEVVDSRVKLKKAGKN-----YQACCPFHNEKSPSFTVSQDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK----IEKKEKIQTDL 117
           Y+CF C   G+ +SF+       F+E+++ LA   G+ +P          E+K++ Q D 
Sbjct: 59  YHCFGCGAHGNAISFIMEFDRLEFVEAIEELARYHGLEVPREKGSRPAMSEEKKQQQQDD 118

Query: 118 IRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             ++E    FF H L+     K+   YL  RG+    ++ +++GYAPDS  +L     + 
Sbjct: 119 YAVMEQVARFFQHQLRQNGNSKKAIDYLKNRGLSGDIVKQWEIGYAPDSWDALLNTFGKD 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
               +++++  L+   D    +YD FR+R++FPIR  RG+V+ FGGR L      KYLNS
Sbjct: 179 QQRIKQLVDLKLVNKNDQG-RTYDFFRDRIMFPIRDKRGRVVGFGGRVL-DDGGPKYLNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +FHKG  L+ F+ A    +          S   +++VEGYMDV++L Q  +    +
Sbjct: 237 PETRIFHKGSELFGFYSARQKNR----------SLDTVVIVEGYMDVVALSQFDINIATA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  IV C+DGD  G  AA++A++  L  L  G R++F+ L  G
Sbjct: 287 ALGTATTPEHIQMLVRATSHIVCCYDGDRAGREAAWRALENALPALKDGVRISFLFLPDG 346

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD+ +R  GK AF +++ +++PL    ++   +  +  TP+ +  L+      I    
Sbjct: 347 EDPDTMVRQVGKDAFMEMLDDAMPLSRFFFENLLKTHNVGTPEGKIALKKAAMPLIESTL 406

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               +    + +     +  +          +  +   +       +    ++ + K KL
Sbjct: 407 GDDQKQMLLEELAKHTGEFDR---------FKLQQDITKANQGSKQAYSPNRNQVNKPKL 457

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           S         L+  L++ P +       ++      N     L   + S  V        
Sbjct: 458 SPL-----RMLIRLLLDKPELATLCEDVQIDIFAGSNAAGMDLLRDVHSYCVSHPQAKTA 512

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ +   +      + +L  Q                D  + Y  + A        SR +
Sbjct: 513 QLVENFRDHPHSSTIAKLLLQEHLVK---------DEDAERVYNDSFARLLDGHFDSRIE 563

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHE 623
             I +   Q   + E ++  +L+    +
Sbjct: 564 TLISRSRVQPLTQAEKQELNLLMRERQK 591


>gi|239814769|ref|YP_002943679.1| DNA primase [Variovorax paradoxus S110]
 gi|239801346|gb|ACS18413.1| DNA primase [Variovorax paradoxus S110]
          Length = 659

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 174/685 (25%), Positives = 287/685 (41%), Gaps = 75/685 (10%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P  FI++L+    +  ++G+YV   +   N     +   CPFH EK+PSF  + +K 
Sbjct: 1   MTIPASFIQELIARADVVEIVGRYVQLKKAGAN-----FMGLCPFHGEKSPSFSVSPTKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK------EKIQ 114
           FY+CF C V G+ + FL    G  F+E+V  LA   G+ +P  D    ++       + Q
Sbjct: 56  FYHCFGCGVHGNAIGFLMEHAGMGFVEAVHDLAGQYGLQVPEDDASPAERARAASQRQKQ 115

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  ++E A + +  +L+ A       YL  RG+       F +GYAP    +L     
Sbjct: 116 ATLTDVLEKAGEAYRKALRQAPGA--IEYLKGRGVSGEVARQFGIGYAPAGWRTLASVF- 172

Query: 175 QKGFSEEKIIEAGLLIDGDNSA----TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
              + +  + E+GL+I            YDRFR+R++FPIR+ +G+ I FGGR L   E 
Sbjct: 173 -PDYDDPLLAESGLVIVNAEDGAEDAKRYDRFRDRVMFPIRNVKGECIGFGGRVL-GDEK 230

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET +F KG+ LY  + A    +             F ++ EGYMDV++L Q G
Sbjct: 231 PKYLNSPETPVFSKGRELYGLYEARAAFR----------ERGFALVTEGYMDVVALAQLG 280

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
             N V++LGTA T   ++ L++ +  +V  FDGD  G RAA KA+D  L +      + F
Sbjct: 281 FPNAVATLGTACTTEHVQKLFRFTESVVFSFDGDAAGRRAARKALDGALPYATDVRSIKF 340

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           + L    DPDSFIR +G  AF + I E+ PL   + +   E     T + RA +  +++ 
Sbjct: 341 LFLPAEHDPDSFIREFGADAFARFIQEATPLSRFMLEAAREGCDLTTAEGRAHMTSNVRP 400

Query: 411 CINHIKDQKLRYYYSQAIR----------DRLQQLFQKYITEHSGYGRYW---------- 450
             + + D  L+      I             L           +   +            
Sbjct: 401 LWSAMPDGALKRQLLSEIAALVQLDAAALSELWASTPGPRRPAAAPAQRQGDAGHESDYP 460

Query: 451 -------------------KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
                              +K  + +   G  +  ++    +GK   +P +    LL  +
Sbjct: 461 DMPPPAEYEPPRYESDSKPRKFTKGKRWGGKFEAPIEPLRGRGKPPSRPDVAARLLLSNM 520

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
               A+  E +  L D+         L+++L S   E        + + +    F  L +
Sbjct: 521 AQWDALSHELHVMLCDLP---GPHGALFTWLDSQLHEHGVQPWAALREGMRGLDFEALAE 577

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           +L      A +     E ++ D  +     L      R L  Q+ E    + +       
Sbjct: 578 RLMSVSESAPVPEGEEEQHLADAAKELASVLDFMLDDR-LKAQQSEAIAAVGKDPKAL-- 634

Query: 612 EKTAILISILHEVHIQIHQIESQEA 636
           E+   L +   E+  +++   ++ A
Sbjct: 635 ERYKALEARRLELRNRLNPRGAETA 659


>gi|167768031|ref|ZP_02440084.1| hypothetical protein CLOSS21_02574 [Clostridium sp. SS2/1]
 gi|317498376|ref|ZP_07956671.1| DNA primase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710360|gb|EDS20939.1| hypothetical protein CLOSS21_02574 [Clostridium sp. SS2/1]
 gi|316894270|gb|EFV16457.1| DNA primase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 591

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 161/610 (26%), Positives = 277/610 (45%), Gaps = 34/610 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I+++     I +LI  YV   ++ +      Y+  CPFH+EK+PSF  +  K 
Sbjct: 1   MIYGEEIIEEVRSRNDIVDLISTYVPLKKKGS-----SYFGLCPFHNEKSPSFSVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLI 118
            YYCF C   G+  +FL      SF E+++ LA  AG+ LP  +   E K     +  L 
Sbjct: 56  MYYCFGCGAGGNVFTFLMEYENFSFPEALKYLAERAGMELPEEELNEEAKRAMDEKARLR 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + +++ ++F++ L + R ++   YL +RGI    I+ F LGYA      L   L+ KG+
Sbjct: 116 EMNKLSANYFYYLLHSKRGQKGLAYLKDRGITDATIKHFGLGYADIYNDDLYRFLKSKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S+E + ++ L+   +    S D+F NR++FPI     +VI FGGR +    S KYLNS E
Sbjct: 176 SDEDLKDSALVTIDERRGGS-DKFWNRVMFPIMDVNNRVIGFGGRVM-GDGSPKYLNSKE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF K +NLY    A +  +K             IIL EGYMDV+S+ QAG  N V++L
Sbjct: 234 TKLFDKSRNLYGLNFARSSRKK------------EIILCEGYMDVISMHQAGFTNAVAAL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T     LL + +  ++L FD D+ G RA  +AI +       G  V  + L+  +D
Sbjct: 282 GTAFTSGHGTLLKRYTENVILSFDSDEAGQRAILRAIPI---LKEAGLTVRVLDLTPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  A E+ I +++       K        + P+ + + +      +  I++ 
Sbjct: 339 PDEFIKGLGAQALEERIRKAMSSFMFQVKVAAGRYDQDDPESKTQFQHEAAKLLATIEEP 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+        +      + YG     +A+ +      ++  +   V     +
Sbjct: 399 LERKNYIEAVSREYYIGAKDLEDLVNYYGTSGYSSAQRQQTTP--RQQERRLQVNEAKEE 456

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           K    +  LL  ++N P +  +    +    +       +   LF  + E+K  +P +I 
Sbjct: 457 KKKQPQKLLLTWMVNEPQLFDKLEGIIGPDDFYEQIYHGVALLLFKQYEEEKAVIPGKIL 516

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ--------ALALYKRFRL 590
            +  +    + + +L          +   +  + D+ +  ++        A     R++ 
Sbjct: 517 NQYTDLEDQKKIAELFNTTLKISPLAEDRDKALNDIVRRVKEDSIEQQMNATNDILRWQD 576

Query: 591 LSRQKEEIEK 600
           L ++K  + K
Sbjct: 577 LIKEKANLAK 586


>gi|305680980|ref|ZP_07403787.1| DNA primase [Corynebacterium matruchotii ATCC 14266]
 gi|305659185|gb|EFM48685.1| DNA primase [Corynebacterium matruchotii ATCC 14266]
          Length = 630

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 130/647 (20%), Positives = 254/647 (39%), Gaps = 44/647 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +     I  +IG+YV      +           PF DEKTPSFH   + G+
Sbjct: 5   RIPNSDIQAIRERAAIEEIIGEYVQLKPSGS----DSLKGLSPFKDEKTPSFHVRPNHGY 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118
           Y+CFS    GD  +FL  +   +F E+V+ +A      +            +   +  LI
Sbjct: 61  YHCFSTGKGGDVFNFLMEMEHLTFPEAVELVADKINYHINYQGGSTGAPAVEPGTRKRLI 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
                A  F+   L+  + +    +L +RG     I  F+ GYAP+   ++ +HL +K F
Sbjct: 121 EANRAAHAFYRKQLETPQAQVARTFLLDRGFSKELIYSFECGYAPEGWDAVTKHLLKK-F 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           +  ++  AGL +         DRFR RL++PI++  G VI FG R L + +   KYLN+P
Sbjct: 180 TFPELEAAGLSV--MGRRGPVDRFRRRLLWPIKNISGDVIGFGARKLFEDDQLGKYLNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K K L+    A   +           SS   ++VEGY DV+++  AGV   V++
Sbjct: 238 ETLLYKKSKVLFGLDRAKKNIA----------SSRQCVVVEGYTDVMAMHAAGVATAVAT 287

Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA  +  L+++             ++  FDGD+ G +AA +A +          +   
Sbjct: 288 CGTAFGDDHLQMIRRLMLDDTYFRGELIYTFDGDEAGQKAAKRAFEGNQKFTG---QSYV 344

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +     DP       G  A   L+   +P+ + + +    +   +TP+ R +       
Sbjct: 345 AVAPDNLDPCDLRLQKGDAAVRDLVASRVPMFEFMIRAVIADYRLDTPEGRLQAMRRAVP 404

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ------KGPSQ 464
            +  I D+ L+  Y++ +   +  + +  +           + A  R           + 
Sbjct: 405 IVASIHDRALQSEYARRLSGWVGWMDEDEVLSQVRVAARNPRPAEPRRAVRFDSDAAVAV 464

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
              Q+ L +          +   L   + +P ++ + +  + +  +     + +   +  
Sbjct: 465 DAPQARLPQPDAKSIQLWPQRESLKLALQYPGVVADGFDAVPEAAFSFETYRVIRHAIAQ 524

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                       +          E +  L  +   + L           V   + + +A 
Sbjct: 525 AGGC-----RAAVVGEWAGMVASE-IDDLIGRSLVSELVVEDIHLQGESVETYWDRTVA- 577

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             + + +S +  +++ ++ ++    + +    + + L  +  Q  Q+
Sbjct: 578 RLQEQQISNEISQLKSKMQRMRPSDDEQAYRSMFANLIALEQQKKQL 624


>gi|253732215|ref|ZP_04866380.1| DNA primase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253724004|gb|EES92733.1| DNA primase [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 605

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 149/636 (23%), Positives = 263/636 (41%), Gaps = 40/636 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +         +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----WKKNARHRDQKGPSQRLMQSSLV 472
              L+      +        ++   E            +      D+ G         + 
Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQFNQAPANYYPEDEYGGYDEYGGYIEPEPIGMA 461

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           +     +    E A L  L+         Y+ +    + N   + ++  L   + E   +
Sbjct: 462 QFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQY 521

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +  Q +      E L  L++            +    +    Y   +    +     
Sbjct: 522 NISDAVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNIINEKGQET--- 570

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
              E +  ++ + T  G+ +     +  +   + + 
Sbjct: 571 --IESLNHKLREATRIGDVDLQKYYLQQIVAKNKER 604


>gi|238018970|ref|ZP_04599396.1| hypothetical protein VEIDISOL_00830 [Veillonella dispar ATCC 17748]
 gi|237864454|gb|EEP65744.1| hypothetical protein VEIDISOL_00830 [Veillonella dispar ATCC 17748]
          Length = 590

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 177/631 (28%), Positives = 277/631 (43%), Gaps = 51/631 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           +  + I+ +     I ++I ++V   +R  N     YW CCPFH+EKTPSF     KGFY
Sbjct: 5   FENELIEQIKDANDIVSVISEHVALKKRGKN-----YWGCCPFHNEKTPSFSVAPEKGFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           YCF CH  G+ + FL  L   SF+E ++RLA  A +PLP     P+   +++ +  L   
Sbjct: 60  YCFGCHASGNVIKFLMELEHLSFVEVLERLANRANIPLPEAKLSPEQRARDERRKKLYEA 119

Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E+A  FFH+ L + +  K    YL +RG+    IE FKLG+APD    L     ++G  
Sbjct: 120 SELAATFFHNCLTQTSIGKVGLDYLKKRGLTKETIEKFKLGFAPDGWDKLYRAFHERGID 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  ++E  L+         YD FRNR++FPI   +G+V+AFGGR +    + KYLNSPE+
Sbjct: 180 DSILLELNLVRKNQKG-QFYDFFRNRIMFPIMDGKGRVVAFGGRVM-DDSTPKYLNSPES 237

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGK L+ F  A   ++               ILVEGYMDV+S    GV NVV+SLG
Sbjct: 238 AIFEKGKLLFAFDKAYKSIR----------QERQAILVEGYMDVISAHNHGVTNVVASLG 287

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T     +L + +  IVL +D D  G +AA +AI+L         +V  + +  G+DP
Sbjct: 288 TAYTRDHGHILMRQADEIVLAYDMDGAGRQAAARAIEL---LQNTDFKVRVLAMPDGKDP 344

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D ++R +G  AF+ L+ +++  +D L          N  + +  +   +   I +I  Q 
Sbjct: 345 DDYVRNHGGQAFKDLVTKAVKPLDYLLSESLIKHDTNDTEGKQAVLADVFPYIANIDSQT 404

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    + +   L             Y R + K  +       S  L    L KG   K 
Sbjct: 405 QRDDALKTLALPLWLDNSSIFR----YFRDYVKKGQIELVDTASAPLPTQDLPKGDAEK- 459

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  LL        +LQ     L    ++  E + +   +F+ F ++       I  
Sbjct: 460 -------LLSLAFTDGEVLQHMMSYLPLEDFEKIEYRGIIEKIFTLFKQEGRLDDTTIQS 512

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L    +               ++S     +  + +      +    R   L  Q +   
Sbjct: 513 VLSPSEYD--------------IYSRLVVMSDDEYKVQVPGLIR-KIRLHSLREQYKAHS 557

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               Q+   G++   + L     E+   I +
Sbjct: 558 IMADQLKRAGDSTFISEL-HKCQEIQNLIRE 587


>gi|15924552|ref|NP_372086.1| DNA primase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927142|ref|NP_374675.1| DNA primase [Staphylococcus aureus subsp. aureus N315]
 gi|156979880|ref|YP_001442139.1| DNA primase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253314933|ref|ZP_04838146.1| DNA primase [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|255006348|ref|ZP_05144949.2| DNA primase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|258411062|ref|ZP_05681342.1| DNA primase [Staphylococcus aureus A9763]
 gi|258437394|ref|ZP_05689378.1| DNA primase [Staphylococcus aureus A9299]
 gi|258443600|ref|ZP_05691939.1| DNA primase [Staphylococcus aureus A8115]
 gi|258446807|ref|ZP_05694961.1| DNA primase [Staphylococcus aureus A6300]
 gi|258448721|ref|ZP_05696833.1| DNA primase [Staphylococcus aureus A6224]
 gi|258453538|ref|ZP_05701516.1| DNA primase [Staphylococcus aureus A5937]
 gi|269203190|ref|YP_003282459.1| DNA primase [Staphylococcus aureus subsp. aureus ED98]
 gi|282893063|ref|ZP_06301297.1| DNA primase [Staphylococcus aureus A8117]
 gi|282928195|ref|ZP_06335800.1| DNA primase [Staphylococcus aureus A10102]
 gi|296275816|ref|ZP_06858323.1| DNA primase [Staphylococcus aureus subsp. aureus MR1]
 gi|54038870|sp|P63965|PRIM_STAAN RecName: Full=DNA primase
 gi|54041648|sp|P63964|PRIM_STAAM RecName: Full=DNA primase
 gi|13701360|dbj|BAB42654.1| DNA primase [Staphylococcus aureus subsp. aureus N315]
 gi|14247333|dbj|BAB57724.1| DNA primase [Staphylococcus aureus subsp. aureus Mu50]
 gi|156722015|dbj|BAF78432.1| DNA primase [Staphylococcus aureus subsp. aureus Mu3]
 gi|257840212|gb|EEV64676.1| DNA primase [Staphylococcus aureus A9763]
 gi|257848599|gb|EEV72587.1| DNA primase [Staphylococcus aureus A9299]
 gi|257851006|gb|EEV74949.1| DNA primase [Staphylococcus aureus A8115]
 gi|257854382|gb|EEV77331.1| DNA primase [Staphylococcus aureus A6300]
 gi|257857999|gb|EEV80888.1| DNA primase [Staphylococcus aureus A6224]
 gi|257864269|gb|EEV87019.1| DNA primase [Staphylococcus aureus A5937]
 gi|262075480|gb|ACY11453.1| DNA primase [Staphylococcus aureus subsp. aureus ED98]
 gi|282590002|gb|EFB95084.1| DNA primase [Staphylococcus aureus A10102]
 gi|282764381|gb|EFC04507.1| DNA primase [Staphylococcus aureus A8117]
 gi|285817244|gb|ADC37731.1| DNA primase [Staphylococcus aureus 04-02981]
 gi|312829950|emb|CBX34792.1| DNA primase [Staphylococcus aureus subsp. aureus ECT-R 2]
          Length = 605

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 150/636 (23%), Positives = 263/636 (41%), Gaps = 40/636 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +         +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----WKKNARHRDQKGPSQRLMQSSLV 472
              L+      +        ++   E            +      D+ G         + 
Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQFNQAPANYYPEDEYGGYDEYGGYIEPEPIGMA 461

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           +     +    E A L  L+         Y+ +    + N   + ++  L   + E   +
Sbjct: 462 QFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQY 521

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +  Q +      E L  L++            +    +    Y   +    +     
Sbjct: 522 NISDAVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET--- 570

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
              E +  ++ + T  G+ E     +  +   + + 
Sbjct: 571 --IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 604


>gi|325928845|ref|ZP_08190012.1| DNA primase [Xanthomonas perforans 91-118]
 gi|325540818|gb|EGD12393.1| DNA primase [Xanthomonas perforans 91-118]
          Length = 582

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 169/631 (26%), Positives = 272/631 (43%), Gaps = 59/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    I  ++G  V   R+       +Y A CPFHDE++ SF  + +K F
Sbjct: 3   RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120
           Y+CF C   G  +SFL       F+++V  LA  AG+ +P    +   +++    +L   
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMDIPRETQQRTPQQQDDSRELYSA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           ++ AT FF   L+ +  +R   YLD RG+D+     F++GYAPD   +L++ L       
Sbjct: 118 LDAATKFFQRQLEGS--ERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235
             +  AGL    D     YD+FR+R++FPI   RG+VIAFGGR +      +    KYLN
Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LFHKG+ LY  +      QK  R          +I+VEGYMDV+SL Q GV   V
Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T     LL++ +P +  CFDGD+ G +A ++A++ VL  +  G +  F+ L  
Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPD+ +R  G  AF++ + ++ PL    +   +   + +T D +A L    +  +  I
Sbjct: 345 GEDPDTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPLLAQI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +        Q +                      +   R R          + SLV+  
Sbjct: 405 PEGAFGDLMKQELARLTG---------VGATASAQQSAPRPRPPARMGAPTQKRSLVRAS 455

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                       +  L+  P++                 +  L   L     ++      
Sbjct: 456 ------------IAILLQRPSLAMSLEGVHDFSGLRLPGIDLLME-LLDLVRQRPEISTG 502

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + +   ER     L++L  Q                         +      +LL ++ 
Sbjct: 503 ALLEHFAERQELAALQKLAAQELPGD----------EHSWTLELHDVVAQLDKQLLRQRV 552

Query: 596 EEIEKQIAQVTAKGEAEKTA--ILISILHEV 624
           EE++ +  +     + +K     L+  L  +
Sbjct: 553 EELQAK-QRAQGLDDTDKYEMRELLKALAAL 582


>gi|239626723|ref|ZP_04669754.1| DNA primase [Clostridiales bacterium 1_7_47_FAA]
 gi|239516869|gb|EEQ56735.1| DNA primase [Clostridiales bacterium 1_7_47FAA]
          Length = 638

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 145/661 (21%), Positives = 261/661 (39%), Gaps = 74/661 (11%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP + I+++ +   I ++I  YV   ++  N     Y+  CPFH+EK+PSF  +  K 
Sbjct: 1   MYYPDEVIEEVRMKNDIVDVISGYVKLQKKGAN-----YFGLCPFHNEKSPSFSVSPGKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+ L+F+      +F E++  LA  AGV LP      +  ++ + +  L+
Sbjct: 56  MYYCFGCGAGGNVLTFVMEYENYTFQEALAHLADRAGVSLPKMEYSKEAREQAEHRARLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            + ++A ++F++ LK  + K  + Y  D RG+    I  F LGY+  +   L   L+ KG
Sbjct: 116 EVNKLAANYFYYQLKQPQGKLGYEYLHDRRGLLDDTIVHFGLGYSNKTSDDLYRFLKGKG 175

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           + +  + + GL+   +      D+F NR++FPI     +VI FGGR +      KYLNSP
Sbjct: 176 YEDSFLKDTGLVTLEERGGR--DKFWNRVMFPIMDVNNRVIGFGGRVM-GDGEPKYLNSP 232

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LF K +NLY    A              +   ++++ EGY+DV+SL QAG  N V+S
Sbjct: 233 ETKLFDKSRNLYGLNYAR------------TSREGYLLICEGYLDVISLHQAGFTNAVAS 280

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA T     +L + + +++L +D D  G++AA +AI +       G  +  + +   +
Sbjct: 281 LGTAFTSQHANVLKRYTDQVILTYDSDGAGIKAALRAIPI---LKEVGMSIKVLNMKPHK 337

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD FI+  G  AF + I E+            +    + P+++          +    +
Sbjct: 338 DPDEFIKNMGADAFRQRIKEAKNSFLFEVDVLRQGYQMDDPEQKTRFYQETAKKLLQFGE 397

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHS--------------------------------- 444
              R  Y QA+         +     +                                 
Sbjct: 398 ALERENYLQAVAREQMIPADELRGLVNRMGMSFGMKSGDSLDHGGKVQHRAVEEDMYPDY 457

Query: 445 -----------GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
                      GY  Y +     R               K          +  LL  LI 
Sbjct: 458 GYYEGYDGPPEGYYDYGEAGPEGRSGYQDGGEARPKRPKKPDKEDGIRRSQRLLLTWLIE 517

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
           +P +  +    +    +  +   ++   +F             +   + +    + +  L
Sbjct: 518 NPELFDKIKGIITSDDFVEDLYHQVAQMVFEGQASGNLNPAAILSHFINDEDQYKEVAAL 577

Query: 554 DRQVRDAGLWSATTEANIVD----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
                   L +   +    +    VR+    A +   +     ++  + +  + ++    
Sbjct: 578 FNASLKESLNNEEQKKAFSETVMKVRKNSLDAASRNAKDITQLQEIIKQQAALKKLRISL 637

Query: 610 E 610
           +
Sbjct: 638 D 638


>gi|212711168|ref|ZP_03319296.1| hypothetical protein PROVALCAL_02240 [Providencia alcalifaciens DSM
           30120]
 gi|212686336|gb|EEB45864.1| hypothetical protein PROVALCAL_02240 [Providencia alcalifaciens DSM
           30120]
          Length = 581

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 165/623 (26%), Positives = 283/623 (45%), Gaps = 48/623 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +L+   V   ++  N     + ACCPFH+EKTPSF  N  + F
Sbjct: 4   RIPRSFINDLLARTDIIDLVDAKVPLKKQGKN-----HHACCPFHNEKTPSFTVNGERQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           YYCF C   G+ + FL       F+E+++ L+A+ G+ +P        + +   + +L +
Sbjct: 59  YYCFGCGAHGNAIDFLMNYDKLDFVEAIEELSALHGLDVPYEKGTGTSQIELHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    F+  +L +    +   YL +RG+ +  I  F +G+AP    +L +       S
Sbjct: 119 LMDKINQFYCAALNHPSANKAKDYLSQRGLSADIISHFSIGFAPPGWDNLLKKFAVNPES 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            +++ EAG+L+  +++   YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RQQLDEAGMLV-TNDNGRVYDRFRERIMFPIRDRRGRVIAFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ L+  + A     +  +          +++VEGYMDV++L Q  ++  V+SLG
Sbjct: 237 DIFHKGRQLFGLYEATQNSSELAK----------LLVVEGYMDVVALAQYDIRYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTSEHIQLLYRSTDTVICCYDGDRAGRDAAWRALENALPYLTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS +R  GK AFE+ +  +  L   L+          T + RA++       I  I  + 
Sbjct: 347 DSLVRKEGKDAFEQRMENAQSLSTFLFDSLVPQVDLKTQEGRAKISKLAIPLIKQIPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y +Q + + +       +            N +    K  +                
Sbjct: 407 LRLYMAQELGNFIGVPDISQVLAMIDRESTEPVNYQAPKLKPTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P   +               L  L+  L             ++ +
Sbjct: 452 -----RILIALLVQNPNFSELVPSLEGIAHIQMPGL-SLFQELVEVCRSTPGMNTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           R  +  F + L++L     D  +        I  +   +  AL     + +        +
Sbjct: 506 RYRDNNFAKQLEKLATW-NDIEIEEIAENTFIDALNHLFNSALDERFDYLI-------AK 557

Query: 600 KQIAQVTAKGEAEKTAILISILH 622
           ++  ++T +   E   I +S + 
Sbjct: 558 ERTQRLTPEEREEVRLITLSRVK 580


>gi|221134906|ref|ZP_03561209.1| DNA primase [Glaciecola sp. HTCC2999]
          Length = 593

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 175/617 (28%), Positives = 284/617 (46%), Gaps = 47/617 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PRDFI DL+    I +++   V   +   N     Y ACCPFH+EK+PSF  +  K F
Sbjct: 4   RIPRDFIDDLIARTDIVDIVDSRVKLKKAGKN-----YQACCPFHNEKSPSFTVSAEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-------IEKKEKIQ 114
           Y+CF C   G+ LSF+       F+E+++ LAA   + +P             ++K++ +
Sbjct: 59  YHCFGCGEHGNALSFIMEFDRLEFVEAIEELAAHHSLDVPREQTNTPFNPQASQEKKQQR 118

Query: 115 TDLIRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
            +   L+E A  FF H LK+     ++  YL +RG+    ++ +++GYAP    +L + L
Sbjct: 119 ENDYELMEKAAKFFQHQLKHHANSSKVIDYLKDRGLSGEIVKSWEIGYAPPEWQALADTL 178

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
                  ++ ++  ++   DN    YD FR+RL+FPIR  RG+VI FGGR L   +  KY
Sbjct: 179 GATPEKAQQCVDLKIMTQNDNG-KRYDFFRDRLMFPIRDKRGRVIGFGGRVLDAEQGPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +F KG  LY    A N  +   R          I++VEGYMDV++L Q  +  
Sbjct: 238 LNSPETRIFFKGSELYGLHRARNMQRHIDR----------IVVVEGYMDVVALSQFEINY 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   ++L+ + +  IV C+DGD  G  AA++ ++  L  L  G ++ F+ L
Sbjct: 288 AVASLGTSTTPEHVQLMLRNTDEIVCCYDGDKAGRSAAWRTMENALPLLKDGKQMKFMFL 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             GEDPD+ +R  GKTA E L  E++PL   L+       +  + + +A L    +  IN
Sbjct: 348 PDGEDPDTMVRKIGKTALETLFSEAMPLSKFLFDNLLTRHNVGSIEGKASLRAEAEPLIN 407

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +     +      +   L    +  +                +    P++ L       
Sbjct: 408 IVGGNIQKEILLGELSKLLGDYDRHQLERDI-----------TKANATPNRMLPPKRGAP 456

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL--WSFLFSDFVEQKY 531
            KLS+ P      L+  LI HP++  +   ++      +  L  L     L     +Q  
Sbjct: 457 QKLSQTPV---RMLIRLLIEHPSLA-QALPKVNPAAITDAGLPGLPFLIELHQFCSQQTN 512

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQV------RDAGLWSATTEANIVDVRQGYQQALALY 585
                + +   E  F + L+ L  Q           ++ +T +  I     G  +AL   
Sbjct: 513 VNTALVFEYFREHPFAQHLQTLLAQEWLVKDDEIQTVYVSTFKRLIDQFLVGQTEALIAK 572

Query: 586 KRFRLLSRQKEEIEKQI 602
            R   LS +++   K++
Sbjct: 573 SRSIGLSDEEKTTLKKL 589


>gi|169628798|ref|YP_001702447.1| DNA primase [Mycobacterium abscessus ATCC 19977]
 gi|169240765|emb|CAM61793.1| DNA primase DnaG [Mycobacterium abscessus]
          Length = 634

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 137/646 (21%), Positives = 244/646 (37%), Gaps = 36/646 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +     I +++G YV   R             CPFHDEK+PSFH   + G 
Sbjct: 4   RIPDRDIAAIRERTRIEDIVGDYVQLKRAGA----DSLKGLCPFHDEKSPSFHVRPNHGH 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD  +F+  +   +F+E+V+RLA   G  +         +     +  L+ 
Sbjct: 60  FHCFGCGEGGDAYTFIQKIEHITFVEAVERLADRIGYTINYEGGGTAAQRDRGTRARLVA 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A +F+  +L +        YL ER  D  A + +  G+AP    +L +HL +KGF 
Sbjct: 120 ANAAAQEFYAAALDSPEAAPARQYLTERNFDGAAAKQYGCGFAPSGWDTLTKHLMRKGFE 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            +++  AGL  +        DRF  RL++PIR+S G+VI FG R +   +++  KY+N+P
Sbjct: 180 FKELEAAGLSRE--GRRGPMDRFHRRLLWPIRASSGEVIGFGARKIFDDDTMPGKYVNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K   L+    A   + K              ++VEGY DV+++  AGV   V+S
Sbjct: 238 ETMLYKKSSVLFGLDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVAS 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN----RVNFVLL 353
            GTA  +  L +L +L                         L           +    + 
Sbjct: 288 CGTAFGDEHLSMLRRLMMDDSYFRGELIYVFDGDAAGQAAALKAFEGEQNLAGQSFVAVA 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G+ A   L+   +PL     +           + R +        + 
Sbjct: 348 PDGMDPCDLRLKSGEGALRDLVARRIPLFAFAIRSALAESDLEIAEGRVDALRRCVPMVA 407

Query: 414 HIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
            IKD  LR  Y++ +   +      Q+  +   E     +    +A  R +   +    +
Sbjct: 408 KIKDPTLRDEYARQLAGWVGWDDVAQVLARVREEAGKAAKGGSVSADRRPRGTETAAAPK 467

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            S+   K       REA  L   +  PA     +  L    + +     + + +      
Sbjct: 468 VSMPDPKDPTLWPQREA--LKAALQFPAFAGPVFDSLTTDSFTHPGYVAVRTAIEVAGGT 525

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
               +  E    +  +     +  L        L +   + +  +    Y  ++    + 
Sbjct: 526 AAGIVGAEWIDVVRRQAASPHVVTLIN-----ALTAEVIQVDSDERLPRYIGSVLAKLQE 580

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             + RQ  E++ ++ +++    A++   L   L  +      +  Q
Sbjct: 581 VWVGRQVAEVKSKLQRMSPVDNADEYHALFGDLVALEAYRRSLLEQ 626


>gi|325130609|gb|EGC53354.1| DNA primase [Neisseria meningitidis OX99.30304]
          Length = 590

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 180/608 (29%), Positives = 294/608 (48%), Gaps = 42/608 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     +++  R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEVGR----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  ++   
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVML--- 454

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                +L +  +   LIN P        +L D    + +   L +   S           
Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAESIKNHAAVPETA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + ++      +   ++++E +  + + G ++ L   K  ++ + ++
Sbjct: 507 QVLEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIETLKQ 566

Query: 596 EEIEKQIA 603
           + ++  + 
Sbjct: 567 KSLQSGLN 574


>gi|147677241|ref|YP_001211456.1| DNA primase [Pelotomaculum thermopropionicum SI]
 gi|146273338|dbj|BAF59087.1| DNA primase [Pelotomaculum thermopropionicum SI]
          Length = 630

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 169/635 (26%), Positives = 283/635 (44%), Gaps = 40/635 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P D I+ + ++  I  ++ +YV   ++        +   CPFH +++PSF     K  +
Sbjct: 4   IPDDIIETVRLNSDIVEVVSRYVSLRKKGK-----YFTGSCPFHSDRSPSFTVTPDKQIF 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRLI 121
           +CF C+  GD   FL      +F E+V  LA  AG+ LP   DP   ++++ +  L R+ 
Sbjct: 59  HCFGCNAGGDVFKFLMLKENLTFYEAVSMLARRAGIALPAREDPAGPERDRKKALLQRIN 118

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           ++A DFF+ +L+          YL ERG+    ++ F++G+A     +L + L +KG   
Sbjct: 119 DLAKDFFYENLRRHEAAAEARRYLAERGLSGEVLDRFQIGFALPGWSALLDFLSRKGCQP 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
               EAGL + GD+    YDRFRNR+IFPI    G+V+ FGGR L  G   KYLN+PET 
Sbjct: 179 HDAAEAGLAVKGDSG-RYYDRFRNRIIFPIWDPVGRVVGFGGRVL-DGSLPKYLNTPETP 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
            F KG+ LY    A   ++               ++VEGYMD ++    G  N V+SLGT
Sbjct: 237 FFSKGRILYGLHLARPAIR----------ERDCAVVVEGYMDAVTAHLHGAANTVASLGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q RLL   S  +V+ +D D  G+ AA + +DL       G +V    +  G+DPD
Sbjct: 287 ALTAEQGRLLINYSRNVVIAYDADAAGVAAAMRGMDL---LQELGFQVRVATIPDGKDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +IR  G  ++EKLI E+  L++   ++  E     T   + E+   +      +K++  
Sbjct: 344 EYIRRQGIQSWEKLIGEAPSLIEYKLQKAMEKGPVRTVTGKLEVMRQVFP-NLALKNEVE 402

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    +AI   L   ++    E   + R+     +         +   + L K +     
Sbjct: 403 KEEGLKAIAGALNLTWETVAGE---FKRFEANLGKKWANPDNIVKTKHNILSKEEKLDHR 459

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  LL  ++  P++     +E+    + N + QK++  L  +   +  F P EI   
Sbjct: 460 GKLEIGLLRLVLEDPSLGTHVVEEMGPEPFRNPQYQKIFE-LCRNAAGRPVFRPAEIFSS 518

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L +          ++ V    L       N+V + + +  ++  ++R        +E   
Sbjct: 519 LEDD---------EKNVLSFLLTQDIPGENLVQIMKNHIDSIRRFERRERREALLKE--- 566

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            IA+    G       L      +       ++ E
Sbjct: 567 -IAKAEKAGNHSLCNELWREYIILRSIAEAEKNGE 600


>gi|172040997|ref|YP_001800711.1| DNA primase [Corynebacterium urealyticum DSM 7109]
 gi|171852301|emb|CAQ05277.1| DNA primase [Corynebacterium urealyticum DSM 7109]
          Length = 670

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 143/674 (21%), Positives = 252/674 (37%), Gaps = 69/674 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +    PI  ++G+YV                  PF DEKTPSFH   +KG+
Sbjct: 8   RIPERDIEAIREATPIEEIVGEYVQLTPGG----VDSMKGLSPFKDEKTPSFHVRPNKGY 63

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CFS    GD  SFL  +   +F E+V+++A   G  +        ++EK   +  L+ 
Sbjct: 64  FHCFSTGEGGDVFSFLMKMEHLTFPEAVEQVAERIGYRINYEGGGPGRREKPGTRQRLVA 123

Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             + A +F+     +          +L +RG      + F  GYAP    +L +HL +KG
Sbjct: 124 ANKAAFEFYREQFASDVQGADVARQFLIDRGFTQEHADQFGCGYAPLGWDTLTKHLLRKG 183

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNS 236
           F  +++  AGL      S    DRF  RL++PIRS  G VI FG R L + +   KY+N+
Sbjct: 184 FEFQELEAAGLSR--MGSKGPIDRFHRRLLWPIRSVAGDVIGFGARKLFEDDKLGKYMNT 241

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET+L+ K K L+    A   + +              ++VEGY DV+++  AGV   V+
Sbjct: 242 PETLLYKKSKVLFGIDQAKRSIAQK----------HQAVVVEGYTDVMAMHAAGVDTAVA 291

Query: 297 SLGTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
           S GTA     L +L +           I+  FDGD+ G +AA +A +          R  
Sbjct: 292 SCGTAFGSEHLAMLRRFMLDDRYFRGEIIYTFDGDEAGQKAALRAFEGDQQFTG---RSY 348

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
             +   G+DP       G  A  +L+   +P+ + + +   E       D R      + 
Sbjct: 349 VTVAPGGQDPCDIRLERGDEAVRELVSNRIPMFEFVIRTLLEGYDTAAVDGRVHAMRRII 408

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQ----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
             +  IKD  LR  YS+     +           + E +  GR  K     +      +R
Sbjct: 409 PVLAGIKDDALRDEYSRQAAGWVGFDDPDDIVAQVREEARRGRTEKPKLELKRGAARRER 468

Query: 466 LMQS----------------------------SLVKGKLSKKPSLREAALLLTLINHPAI 497
           L +                              + +     +  L    +L   +  P +
Sbjct: 469 LAEKGGQAGPGAANQGGVPGGEDSGGHLRVVAGMERPDPKDELLLGIREVLKLGLQEPEL 528

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
             + +  +    + +     + + + +     +          +       + + +  ++
Sbjct: 529 AGQIFDLMPPESFLHPTYIAIVNAMAAAGGAAQAKSGSGWLDAVSNNVPDAMGQAVVSEL 588

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
               L               Y  A+    + R +S +  E+  Q+ ++    + E     
Sbjct: 589 AVEDLQCQQERLP------YYASAIMARMQERWVSNEVAELRAQMQRMRPDEDKEAYMAT 642

Query: 618 ISILHEVHIQIHQI 631
            + L  +      +
Sbjct: 643 FADLTALEKYRRSL 656


>gi|299533870|ref|ZP_07047237.1| DNA primase [Comamonas testosteroni S44]
 gi|298718154|gb|EFI59144.1| DNA primase [Comamonas testosteroni S44]
          Length = 688

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 173/688 (25%), Positives = 288/688 (41%), Gaps = 94/688 (13%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI++LL  + + +++G+YV   +   N     +   CPFH EK+PSF  + SK F
Sbjct: 29  AIPQSFIQELLSRVDVVDIVGRYVQLKKGGAN-----FMGLCPFHSEKSPSFTVSPSKQF 83

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK------KEKIQT 115
           ++CF C   G+ + FL    G  F+E+VQ LA   G+ +P  D    +      +++   
Sbjct: 84  FHCFGCGKNGNAIGFLMEHAGMGFVEAVQELANQCGLQVPQDDISPAERQRQAQQKQKAE 143

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L  L+E A + +   LK     +   YL +RG+     + F LGYAP   + L      
Sbjct: 144 TLSDLLEKAGESYRKQLKA--APKAIEYLKKRGVSGEVSKRFGLGYAPAGWHGLASVFA- 200

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
             +   ++ E GL+I G++ +  YDRFR+RL+FPIR+ +G+ I FGGR     E  KYLN
Sbjct: 201 -EYDNPQLEECGLVIVGEDDSRRYDRFRDRLMFPIRNVKGECIGFGGRVF-GDEKPKYLN 258

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +FHKG+ LY  + A   L+             + ++ EGYMDV++L Q G  N V
Sbjct: 259 SPETPVFHKGRELYGLYEARQALR----------DMGYALVTEGYMDVVALAQLGFANAV 308

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T   ++ L++ +  +V  FDGD  G RAA KA+D  L        + F+ L  
Sbjct: 309 ATLGTACTPEHVQKLFRFTDAVVFSFDGDGAGRRAARKALDAALPLATDTRSIKFLFLPS 368

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPDSFIR +G  AF + + ++ PL   L +  +E       + RA +  + +   + +
Sbjct: 369 EHDPDSFIREFGPEAFSRYVGDATPLSRFLIESASEGCDLGQTEGRAHMASNARPLWSLL 428

Query: 416 KDQKLRYYYSQAIRDR-------LQQLFQKYITEHSGYGRYWK----------------- 451
            D  L+      I          L  ++ +     +   R                    
Sbjct: 429 PDGALKRQLLSEIAALAQLDSRDLSDIWAQEAARTAPIARRAPAPPGPQAPEWDAPAGNW 488

Query: 452 ---------------------------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                                      +    R +K   ++    +  +      P  RE
Sbjct: 489 ESAPDWADAAAPAPSYPSQGSGGNWSGRKEFGRQRKPWGKKGEDWNPPQLGPRPTPVSRE 548

Query: 485 AALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
                 L+ H   ++E  +++   +   N     L+ +L + F E        + ++L  
Sbjct: 549 DQAARLLMCHMEFMEEMTHEDFDALARCNQSHAPLFRWLEAQFTESGPRSWAVLREQLQG 608

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                L ++L           A  E  + ++R+  +  L L      L R++ +  K+IA
Sbjct: 609 SPCEPLAQKLMSGA------HANPEGEVDELRKELRGTLNLIL-VDHLKREEAKALKEIA 661

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI 631
                              E   +   +
Sbjct: 662 TDPTAA---------RRYIEFQQRRKNL 680


>gi|256751254|ref|ZP_05492134.1| DNA primase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749809|gb|EEU62833.1| DNA primase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 595

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 159/635 (25%), Positives = 291/635 (45%), Gaps = 43/635 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y R+ I+ ++    I ++I +YV+  +        ++   CPFH EKTPSF  +  K 
Sbjct: 1   MAYSREMIEKVIEANDIVDVISEYVELKKAGK-----EFKGLCPFHREKTPSFMVSQEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDLI 118
            Y+CF C+  G+ ++F+  +   +F E+++ LA   G+ L        + ++ +   ++ 
Sbjct: 56  VYHCFGCNASGNVVTFIMDIENLTFKEAIEFLADRVGITLEETVLTEREYQRKKLIDEIY 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           ++ ++AT +F++ L +   ++   Y+ +RG+    I+ F +GY+      L   L++KG+
Sbjct: 116 KVNKLATMYFYNKLFSEEGRQALTYIRKRGLTEATIKKFGIGYSSPHGNGLLNFLKEKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +E  +++AGLL     +   YDRFRNR++FPI   +G VI FGGR++      KYLN+PE
Sbjct: 176 TESFLVKAGLLSQ--KNNRYYDRFRNRVMFPIIDVKGNVIGFGGRSI-DDSLPKYLNTPE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F KGK L+    A                    I+VEGYMD +SL QAG+   V+SL
Sbjct: 233 TEVFKKGKTLFAINFAKK------------TQQDKFIIVEGYMDAISLHQAGIDCAVASL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE Q RL+ +    +V+ +D D+ G+ AA + +D+          +  + +  G+D
Sbjct: 281 GTALTEDQARLIKRYKGNVVIAYDADEAGISAALRGLDI---LDELNLNIKVLTIPYGKD 337

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AF +LI  +  L++   K   +N   + P +R      +   I  + D+
Sbjct: 338 PDEFIKKEGVNAFNQLIENADSLIEFKAKVFRKNLDLDNPQDRIIYVKKIAKDIAKLSDE 397

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y  +     Q       TE + +     +  +       + R    S  K     
Sbjct: 398 VKREVYISSAAKVAQIPENAVRTEVARFVNREIEKNQKNMYMAGNIRHNIYSSSKISP-- 455

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E  L+  L+    + +   + +     +N +L+ ++  + S   + K     +I 
Sbjct: 456 -----EKYLIALLLYDNNLYKRVKETITADMLENVKLKPIFGEIMSRLEDGKKTQINDIV 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L E         + +   ++            +V +     +        L+ ++E+I
Sbjct: 511 YLLQEENLISDFNDIIKAFYES-----------ENVTEQAVDDIINKILINSLAVKREKI 559

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++ I +    G+ EK   L+  L     ++ +I++
Sbjct: 560 KRAINEAHMLGDIEKERQLLIELQNCEKEMLKIKN 594


>gi|189424080|ref|YP_001951257.1| DNA primase [Geobacter lovleyi SZ]
 gi|189420339|gb|ACD94737.1| DNA primase [Geobacter lovleyi SZ]
          Length = 588

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 167/631 (26%), Positives = 279/631 (44%), Gaps = 50/631 (7%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            D ++++   + I+ +IG+YV   R  +N     +   CPFH EKTPSF+ N ++  ++C
Sbjct: 4   NDTVREVAERLSIAEIIGEYVSLKRSGSN-----FLGLCPFHGEKTPSFNVNPAREIFHC 58

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRLIE 122
           F C   GD  SF+  + G SF E++++LAA AGV +        +K+    +     ++ 
Sbjct: 59  FGCGAGGDIFSFVMKIEGISFPEALRKLAARAGVAIEDRPLTDAEKQLKTERDQQRAIML 118

Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           +    +  +L +         YL ER +D      + LGYAP+ R +L + LR KG   E
Sbjct: 119 LTAQHYRETLTRQPEGAVARSYLQEREVDPETAAAYGLGYAPERRDTLIQLLRAKGLPLE 178

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           +     L I        YD   +RLIFPIR  +GQ I F GR L      KY+NSPE+ L
Sbjct: 179 QAE--QLGIIRRGDRGWYDLLHHRLIFPIRDKQGQPIGFAGRVL-DNSLPKYINSPESPL 235

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           + K   L+    AL  ++           S   I+VEGY D L+L +AG++N +++ GTA
Sbjct: 236 YRKSSVLFGVDLALRDIR----------QSGTAIIVEGYFDHLALYRAGIRNALATCGTA 285

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT+  + LL K + R+ L FDGD+ G +A  +A++L L        V  + L +GEDPDS
Sbjct: 286 LTDGHISLLKKHAQRVCLLFDGDNAGRKATVRAMELCLEQA---LPVYVINLPQGEDPDS 342

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            ++ +G  AF + +  + P  +            ++ D+R  L   +      IKD   R
Sbjct: 343 LLQKHGVEAFNQRVAAAKPAFEQFLHWLLAKTPADSIDQRVRLMDEIIPRFQRIKDPVER 402

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y + I   L    Q +    +G     +  A+ +    P  + +              
Sbjct: 403 DLYQKEICRLLGVDLQAFRRRLAGQRDQQQPVAQRQTATKPVTQTIARDST--------- 453

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLPEEIHQR 540
             +  +L  L  +P    E  + L   +  + +   L   + +    E    L  E+  R
Sbjct: 454 --QETMLGLLAAYPEARLEI-RTLDLQQLFDQQHLPLAQAILAAGEGEHDGPLWPEVLAR 510

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L +    EL+ +L  Q +             +D R   +Q L   K+     R  ++I  
Sbjct: 511 LEQEQQKELVARLLIQDQHL---------AGIDWRAALRQCLKRQKQGET--RGLKQIAL 559

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           ++A +    ++E+   L+    ++  Q   +
Sbjct: 560 RLATLPE--DSEEYQELLKTADQLRNQKSAL 588


>gi|325204513|gb|ADY99966.1| DNA primase [Neisseria meningitidis M01-240355]
          Length = 590

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 179/608 (29%), Positives = 295/608 (48%), Gaps = 42/608 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K +  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKKQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  ++   
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVML--- 454

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                +L +  +   LIN P        +L D    + +   L +   S           
Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAESIKNHAAVPETA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + ++      +   ++++E +  + + G ++ L   K  ++ + ++
Sbjct: 507 QVLEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIETLKQ 566

Query: 596 EEIEKQIA 603
           + ++  + 
Sbjct: 567 KSLQSGLN 574


>gi|38605698|sp|O05338|PRIM_STAAU RecName: Full=DNA primase
          Length = 605

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 150/636 (23%), Positives = 262/636 (41%), Gaps = 40/636 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +         +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----WKKNARHRDQKGPSQRLMQSSLV 472
              L+      +        ++   E            +      D+ G         + 
Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQFNQAPANYYPEDEYGGYDEYGGYIEPEPIGMA 461

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           +     +    E A L  L+         Y+ +    + N   + ++  L   + E   +
Sbjct: 462 QFDNLSRREKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQY 521

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +  Q +      E L  L++                 +    Y   +    +     
Sbjct: 522 NISDAVQYVNSNELRETLISLEQY--------NLNGEPYENEIDDYVNVINEKGQET--- 570

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
              E +  ++ + T  G+ E     +  +   + + 
Sbjct: 571 --IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 604


>gi|313668078|ref|YP_004048362.1| DNA primase [Neisseria lactamica ST-640]
 gi|313005540|emb|CBN86976.1| DNA primase [Neisseria lactamica 020-06]
          Length = 590

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 182/601 (30%), Positives = 283/601 (47%), Gaps = 44/601 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGKT FE  L+ +S PL +  W+  +++ + NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKTQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                      ++      S           K
Sbjct: 400 TAPALGYLLKQRLSELVGIDPDNLAQLLGQEAPKQHVKQKNYKLPPIS----------VK 449

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 450 QPVMPTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSR 593
           +I + +    + E + ++ R    +       E +  + + G ++ L   K  +   L +
Sbjct: 507 QILEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIEALKQ 566

Query: 594 Q 594
           +
Sbjct: 567 K 567


>gi|229828461|ref|ZP_04454530.1| hypothetical protein GCWU000342_00523 [Shuttleworthia satelles DSM
           14600]
 gi|229793055|gb|EEP29169.1| hypothetical protein GCWU000342_00523 [Shuttleworthia satelles DSM
           14600]
          Length = 649

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 157/663 (23%), Positives = 269/663 (40%), Gaps = 83/663 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y  + I  +     I ++IGQYV   +  +      Y   CPFH+EKT SFH N  K FY
Sbjct: 4   YSDELIDQVREANDIVDVIGQYVGLKKTGS-----AYVGLCPFHNEKTGSFHVNRGKQFY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   G+  +FL      +F E+V+ LA  AG+ LP      +   +   ++ L+ +
Sbjct: 59  HCFGCGAGGNVFTFLMNYENMTFPEAVKTLADRAGIALPERRMSKEDRARADKRSRLLEI 118

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A  F+   L+         Y  +R +    ++ + LGY      +L  +L+ KG+ +
Sbjct: 119 NREAAKFYFAVLRGKDGATAMNYFRDRQLTEETMQKWGLGYTGSHSNALYRYLKGKGYED 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             ++++GL I       ++D+F NR +FPI  + G+VIAFGGR + +GE  KYLNSPET+
Sbjct: 179 RDLVDSGL-IAISERRGAHDKFWNRAMFPIMDAGGKVIAFGGRVMGEGEP-KYLNSPETM 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K + L+  F A    +              +IL EGYMDV+S+ Q G  N V+SLGT
Sbjct: 237 IFNKSRTLFGLFLAKRTRR------------PQMILCEGYMDVISMHQNGFDNTVASLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE   ++L + + ++ L +D D  G+RAA +AI L       G     + +   +DPD
Sbjct: 285 ALTEGHAQMLKRYTRQVYLSYDSDPAGIRAALRAIPL---LKDAGISCKIINMQPCKDPD 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            F++  G  A+E+ I E+        +    +   + P+   E    +   I+   ++  
Sbjct: 342 EFMKKLGPDAYEERIKEAENSFMFTIRMLERDYQMDDPESNTEFFRQVALRISRFPEEIE 401

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG------------------- 461
           R  Y QA+ DR  +  +                AR +                       
Sbjct: 402 RGNYIQAVADRYHRSAESIRQLVVHMASQEGILARRKSADKADKGAFSLNRSQRDPDEDA 461

Query: 462 ----------------------PSQRLMQSSLVKGKLSKKPSLRE-------AALLLTLI 492
                                 P   L  +   +    ++   RE         LL  + 
Sbjct: 462 FAMADAYARAQDETEAAYRGSDPGMDLSPARTARKGPGQRSQPRETGMRQSQRLLLTWIT 521

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELL 550
             P I +     L  + ++    + +   ++S   EQ    P  I       + G    +
Sbjct: 522 EDPEIYRVVKPYLEPMDFEEGVYRDVAEEVWSQ-SEQGGVNPARIMDHFQEGDEGVQREV 580

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-------LLSRQKEEIEKQIA 603
            ++                 + +     ++A    KR +        L+    + +K++ 
Sbjct: 581 ARIFNTTVGRLTERTDRIKALRETLLRIKRAAMERKRRKGNAVDPDFLTEMIRD-KKKLQ 639

Query: 604 QVT 606
           ++ 
Sbjct: 640 ELE 642


>gi|325201774|gb|ADY97228.1| DNA primase [Neisseria meningitidis M01-240149]
 gi|325208474|gb|ADZ03926.1| DNA primase [Neisseria meningitidis NZ-05/33]
          Length = 590

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 180/608 (29%), Positives = 294/608 (48%), Gaps = 42/608 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK   +     YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAEAADFYAQQLK--FNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     +++  R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEVGR----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  +    
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + ++      +   ++++E +  + + G ++ L   K  ++ + ++
Sbjct: 507 QVLEHMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIETLKQ 566

Query: 596 EEIEKQIA 603
           + ++  + 
Sbjct: 567 KSLQSGLN 574


>gi|261363709|ref|ZP_05976592.1| DNA primase [Neisseria mucosa ATCC 25996]
 gi|288568269|gb|EFC89829.1| DNA primase [Neisseria mucosa ATCC 25996]
          Length = 590

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 182/613 (29%), Positives = 298/613 (48%), Gaps = 42/613 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL  + I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGKT FE  L+ +S PL +  W+  +++ + NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKTQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + +  K P   + Q  ++   
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKSYKLPPISVKQPIML--- 454

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                +L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKSHAAVPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + Q+ +    +      +E +  + + G ++ L   K  ++ + ++
Sbjct: 507 QVLEYMRGSPYEETVNQIFQSTLYSEEMEGGSEEDRENFQIGMKKLLNELKYKQIETLKQ 566

Query: 596 EEIEKQIAQVTAK 608
           + ++  + +   K
Sbjct: 567 KSLQSGLNENEKK 579


>gi|117921524|ref|YP_870716.1| DNA primase [Shewanella sp. ANA-3]
 gi|117613856|gb|ABK49310.1| DNA primase [Shewanella sp. ANA-3]
          Length = 574

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 173/620 (27%), Positives = 287/620 (46%), Gaps = 55/620 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+    I  LI + V   +   N     Y ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   G+ + F+       F+++++ LA   G+ +P      ++++  +  DL +
Sbjct: 56  FYHCFGCGAHGNAIDFVMEYDRLDFVDAIEDLAGQLGLEVPREQGTGKRQDDGLSRDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A+ FF   L+  +DK+    YL  RG+    +E F +G+APD    L    R    
Sbjct: 116 LMEEASRFFQTQLRQHQDKQKVIDYLAYRGLSDDIVEHFGIGFAPDGWDGLLSRYRHSQD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +++K++ AG+LI  D+    YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 176 AQDKLLTAGMLISNDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +              +++VEGYMDV++L Q GV   V+SL
Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------DKVLIVEGYMDVVALAQYGVDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  ++ C+DGD  G  AA++A++  L  L PG++V F+ L + ED
Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK AFE+++  ++ L + L+             ++  L       I  I+D 
Sbjct: 344 PDSMVRKIGKDAFEQMMESAITLPEFLFDTLATKF----GTDKGNLAKQAFGLIEKIQDT 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L+    + +  +L       + +  G+     K       KG    L            
Sbjct: 400 VLQNLLLENLAHKLGMNSSDDMKKKLGFSVKQTKPTASTGLKGRGTPL------------ 447

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                    +  L+ HP +      + A        +      L  +   +      ++ 
Sbjct: 448 ------RLAIALLVQHPELGVGLSPQPALNHLQMPGIDL--LPLLLELTREHRLNSAQLL 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++  +      L +L +            +    ++   +++AL  +   + + ++ +E+
Sbjct: 500 EQFRDSPHSGTLHKLAQW---------DHQVADENLLGEFKKALI-WLNNQYIEQRYQEL 549

Query: 599 EKQIAQVTAKGEAEKTAILI 618
              + Q   K E  +   LI
Sbjct: 550 --SLKQTHTKEEWIQLQKLI 567


>gi|172056868|ref|YP_001813328.1| DNA primase [Exiguobacterium sibiricum 255-15]
 gi|171989389|gb|ACB60311.1| DNA primase [Exiguobacterium sibiricum 255-15]
          Length = 597

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 151/634 (23%), Positives = 273/634 (43%), Gaps = 47/634 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + +  +     I  LI + V+  ++        Y   CPFH EK+PSF  +  KG 
Sbjct: 3   RLPDELVDQVRQATDIVELISERVELKKQGN-----RYSGLCPFHSEKSPSFSVSPDKGM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117
           YYCF C   G+ ++F+    G SF E+V +LA    + LP  +   +      ++ +  +
Sbjct: 58  YYCFGCGAGGNAITFVMETEGMSFPEAVVKLADRTDIKLPEFERSDQTESTPDQEKKYRM 117

Query: 118 IRLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
                +  D +H   L+ A       YL++RGI   A+  FKLGYAPD      + L ++
Sbjct: 118 REAHRIVADLYHEVMLQTAAGDAGREYLEQRGIQESAMREFKLGYAPDQDRFTVDSLARR 177

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            F  ++++EAGL I         DRF  R++FPI    G ++ F GR++   +  KY+N+
Sbjct: 178 NFDLDEMVEAGL-ISIGRDGDYRDRFNGRVVFPISDRDGTIVGFSGRSIDGRDP-KYVNT 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
            ET LF+K + L+ F  A   ++K          +  ++LVEG +DV+ + QAG+   V+
Sbjct: 236 AETPLFNKSELLFGFAQARGAMRK----------NKQVVLVEGNLDVVRVAQAGIPYTVA 285

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGTALT    + L ++   +++C+DGD  G  A  KA+ L           + + L  G
Sbjct: 286 SLGTALTPVHAQNLGRIVDEVIVCYDGDKAGRAATLKALRL---LEDVAVDCSVIRLPDG 342

Query: 357 EDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           EDPDSFI    +  F ++I +  +  ++       + ++     ER      +   I   
Sbjct: 343 EDPDSFIGAQSEETFLRVIEQERISSLEFKSFYFRQGKNLRLEGERVRYIETMLEEIGRT 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +  LR  Y   + +      +  +++         K  + R Q+      + +S  + +
Sbjct: 403 SNPLLRDIYLGKLAEEFHLSKESLLSQVKPLQLQQAKPKQERRQETQ----VVTSSPQDR 458

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E  LL  +I    +  E   +L  + +++   Q +   L+  +       P+
Sbjct: 459 TFSNWKRAERFLLAYMIRSEEVGLEVRDQLG-VAFNDPAHQLIAGKLYEFYGTNTPADPD 517

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                L +     ++  L+        +    E +  D+   Y +A+   ++ R L  +K
Sbjct: 518 RFLTMLHDASLQRIVADLE--------FMLMPEYDP-DLLSHYIRAVQNERQRRTLDEEK 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            ++ +Q        +    A L+  + E   ++ 
Sbjct: 569 SQLSQQ-------TDIRAQAELMQAIIERKRRLK 595


>gi|15677389|ref|NP_274544.1| DNA primase [Neisseria meningitidis MC58]
 gi|9910821|sp|P57029|PRIM_NEIMB RecName: Full=DNA primase
 gi|7226782|gb|AAF41892.1| DNA primase [Neisseria meningitidis MC58]
 gi|316985996|gb|EFV64933.1| DNA primase [Neisseria meningitidis H44/76]
 gi|325140675|gb|EGC63191.1| DNA primase [Neisseria meningitidis CU385]
 gi|325199862|gb|ADY95317.1| DNA primase [Neisseria meningitidis H44/76]
          Length = 590

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 180/608 (29%), Positives = 295/608 (48%), Gaps = 42/608 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVHGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLTQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  ++   
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVML--- 454

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                +L +  +   LIN P        +L D    + +   L +   S           
Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAESIKNHAAVPETA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + ++      +   ++++E +  + + G ++ L   K  ++ + ++
Sbjct: 507 QVLEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIETLKQ 566

Query: 596 EEIEKQIA 603
           + ++  + 
Sbjct: 567 KSLQSGLN 574


>gi|297207719|ref|ZP_06924154.1| DNA primase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|296887736|gb|EFH26634.1| DNA primase [Staphylococcus aureus subsp. aureus ATCC 51811]
          Length = 605

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 150/636 (23%), Positives = 263/636 (41%), Gaps = 40/636 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +   +     +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQFNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----WKKNARHRDQKGPSQRLMQSSLV 472
              L+      +        ++   E                   D+ G         + 
Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQFNQAPANYYPDDEYGGYDEYGGYIEPEPIGMA 461

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           +     +    E A L  L+         Y+ +    + N   + ++  L   + E   +
Sbjct: 462 QFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQY 521

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +  Q +      E L  L++            +    +    Y   +    +     
Sbjct: 522 NISDAVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET--- 570

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
              E +  ++ + T  G+ E     +  +   + + 
Sbjct: 571 --IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 604


>gi|261392219|emb|CAX49734.1| DNA primase [Neisseria meningitidis 8013]
          Length = 590

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 182/601 (30%), Positives = 290/601 (48%), Gaps = 44/601 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  +    
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   S           
Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAESIKNHAAVPETA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSR 593
           ++ + +    + E + ++      +   ++++E +  + + G ++ L   K  +   L +
Sbjct: 507 QVLEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIEALKQ 566

Query: 594 Q 594
           +
Sbjct: 567 K 567


>gi|325136571|gb|EGC59172.1| DNA primase [Neisseria meningitidis M0579]
          Length = 590

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 181/601 (30%), Positives = 290/601 (48%), Gaps = 44/601 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  +    
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSR 593
           ++ + +    + E + ++      +   ++++E +  + + G ++ L   K  +   L +
Sbjct: 507 QVLEHMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIEALKQ 566

Query: 594 Q 594
           +
Sbjct: 567 K 567


>gi|223044374|ref|ZP_03614408.1| DNA primase [Staphylococcus capitis SK14]
 gi|222442243|gb|EEE48354.1| DNA primase [Staphylococcus capitis SK14]
          Length = 594

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 151/632 (23%), Positives = 268/632 (42%), Gaps = 43/632 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSVINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDL 117
             +CF C   G+   F   +    F+E+V+ L     + + V   +  ++ +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDIPFVEAVKELGERVNIKVDVGQTQYNQQSQMASDDLKM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  D++H++L K    +    YL +RG     I+  ++GYAPDS +   + L +K
Sbjct: 116 IEMHELIQDYYHYALMKTVEGEEALNYLRQRGFTDELIKQRQIGYAPDSSHFCHDFLEKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT    +  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YNNQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K + LYN   A   ++           +  I+L+EG+MDV+    AG++ VV+
Sbjct: 235 PETPIFQKRRLLYNLDKARKSIR----------QNDEIVLLEGFMDVIKSDYAGLKQVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S+GT L++  +  L KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 SMGTQLSQEHMTFLKKLTNNITLMFDGDYAGREATLKTGQ---ALLQQGLNVYVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   + +      +      ++   N             + I  ++
Sbjct: 342 MDPDEYIGKYGNEAFLNFVAKDKKAFVLFKVESHQDEINNNDLAYERHFREATHDIAQVQ 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              LR    Q + +      +    E           A +        +L          
Sbjct: 402 STILRNKLIQDVANIFNMSPEMIYHEVGSNNMPQVAPAEYGYSPQSGSQLF-------NN 454

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             K    E ALL   +         YQ+++D  + N   + +++ L   F E   +   +
Sbjct: 455 LTKHEKAERALLKHFMKDKDTFINYYQKISDEDFTNKYFKSIFNILHDYFSEHDNYSISD 514

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + Q +      E   +L++   +        +    +  + Y   +             E
Sbjct: 515 VMQYIDSNELREAFIELEQYTLN--------DEPYENEIEDYILIINNND-----DESIE 561

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +  ++ + +  G+ E     + ++ + +   
Sbjct: 562 SLNHKLREASRIGDVELQKYYLQLIVDKNKNR 593


>gi|239998769|ref|ZP_04718693.1| DNA primase [Neisseria gonorrhoeae 35/02]
 gi|240080941|ref|ZP_04725484.1| DNA primase [Neisseria gonorrhoeae FA19]
 gi|240115444|ref|ZP_04729506.1| DNA primase [Neisseria gonorrhoeae PID18]
 gi|240123294|ref|ZP_04736250.1| DNA primase [Neisseria gonorrhoeae PID332]
 gi|240125544|ref|ZP_04738430.1| DNA primase [Neisseria gonorrhoeae SK-92-679]
 gi|317164061|gb|ADV07602.1| DNA primase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 620

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 181/608 (29%), Positives = 291/608 (47%), Gaps = 42/608 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I  +I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 32  IPSDFIDELLAKTDIVGIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 86

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 87  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 146

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 147 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 202

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 203 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 259

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 260 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 309

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 310 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 369

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 370 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLVQI 429

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  +    
Sbjct: 430 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 483

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 484 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 536

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + ++ R    +       E +  + + G ++ L   K  ++ + ++
Sbjct: 537 QVLEHMRGSPYEETIDRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 596

Query: 596 EEIEKQIA 603
           + ++  + 
Sbjct: 597 KSLQSGLN 604


>gi|110834923|ref|YP_693782.1| DNA primase [Alcanivorax borkumensis SK2]
 gi|110648034|emb|CAL17510.1| DNA primase [Alcanivorax borkumensis SK2]
          Length = 652

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 177/684 (25%), Positives = 283/684 (41%), Gaps = 92/684 (13%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P +F++DLL    +  LI   V   +   N     Y ACCPFH EKTPSF     K F
Sbjct: 3   RIPENFVQDLLARTDLVELIDARVPLKKTGRN-----YSACCPFHQEKTPSFTVAPDKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLI 118
           YYCF C   G+   FL      +F E+V++LA  AG+ +P   P+     +K+     L 
Sbjct: 58  YYCFGCGASGNAAGFLMEYEHLNFPEAVKQLADRAGMEVPESRPETTADRQKKDRLQSLY 117

Query: 119 RLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L+  A  F+   L+     ++   YL  RG+     + F +G+AP    +L   L    
Sbjct: 118 DLLSRAEKFYVQQLRQAPERQKAVNYLKNRGLSGEIAKQFAIGFAPPGYDNLINGLSLTE 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S E+ +  GLL+  +++  +YD+FR+R+IFPIR SRG+ I FGGR L      KYLNSP
Sbjct: 178 TSLEQAVTGGLLVRREDNNRTYDKFRDRIIFPIRDSRGRTIGFGGRVL-GDGKPKYLNSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHKG+ LY  +       +S R          + +VEGYMDV++L Q GV NVV++
Sbjct: 237 ETPVFHKGQELYGLWEWRQSRDRSDR----------LYVVEGYMDVIALTQHGVPNVVAT 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA TE   R L++    ++LCFDGD  G+RAA++A++ +L  L  G +V F+ L  GE
Sbjct: 287 LGTATTEDHARKLFRQVNEVILCFDGDKAGVRAAWRALESLLPALDDGKQVRFLFLPDGE 346

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD+ +R  G  A   L  ++  L   L++  +E     T D R  L       ++    
Sbjct: 347 DPDTLVRQQGPEALRALTDKADALSTYLFRHLSEGLDLETVDGRVRLARLALPYLDKPAG 406

Query: 418 QKLRYYYSQAIRDRLQQLFQKYIT------------------------------------ 441
              R   ++ +    +   +  I                                     
Sbjct: 407 PVYRALLTEELSRLTRLDKESLIQLKPAPAAPRPTPSTSSPAGNAYDYGHGYEDFGSPPP 466

Query: 442 -----------EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
                      E   +       + +        R+  +    G      +L E  +L  
Sbjct: 467 PTEDDPGIPYPEDFAFADGGNNGSSNNFTADNRNRIRPNPRQNGGRKGPLTLAERLVL-V 525

Query: 491 LINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           L+++P+++++      +  +   + +   L + +     +              E+G  E
Sbjct: 526 LLDYPSLVEQHPLPDNIEQLPLPHID---LLTQVAGLCRQNHSAAALLGALMALEQG--E 580

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L +L +        S           + +  AL+          +   +E  + +V   
Sbjct: 581 TLSRLLKA-------SLKPPMEEEMATRLWLDALS--------QLEVTRLEAALTEVEQA 625

Query: 609 GEAEKT--AILISILHEVHIQIHQ 630
           G  +      L   L E      +
Sbjct: 626 GMPDPAHWQALHKALAEARQHARK 649


>gi|94499954|ref|ZP_01306489.1| DNA primase [Oceanobacter sp. RED65]
 gi|94427812|gb|EAT12787.1| DNA primase [Oceanobacter sp. RED65]
          Length = 661

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 170/659 (25%), Positives = 285/659 (43%), Gaps = 49/659 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL  + I +++   +   +   N       ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLHRVNIVDVVDSRIKLKKAGKNHS-----ACCPFHNEKTPSFTVSSDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           YCF C  KG+ + F+       F ++V+ LA   G+ +P     P+  KK++ +T+L  L
Sbjct: 60  YCFGCGAKGNAVGFVMEYDNVDFPQAVEMLADSVGMEVPREEVSPQQAKKQEERTNLYEL 119

Query: 121 IEVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A +F+   L+    K+    YL  RG+   A + F +G+AP    +L++ L     S
Sbjct: 120 MGSANEFYQRQLRYHDAKQAAVDYLKNRGLSGKAAKFFNIGFAPPGWQNLQDSLANDDES 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              ++ AGL I  D     YDRFRNR+IFPIR  RG+ I FG RTL   +  KYLNSPET
Sbjct: 180 LAAMVTAGLTIKNDQG-RHYDRFRNRIIFPIRDVRGRTIGFGARTL-GDDKPKYLNSPET 237

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+KG+ LY  +      Q   R           ++VEGYMDV++L + G+   V++LG
Sbjct: 238 PIFNKGQELYGLYECRQIRQPLKR----------FLIVEGYMDVVALHEFGIHYAVATLG 287

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA ++  L+ L+K++P IV CFDGD+ G RAA + ++LVL  +  G ++ F+ L  GEDP
Sbjct: 288 TATSDTHLQKLFKIAPEIVFCFDGDEAGRRAAKRGLELVLPIIEDGQQIRFMFLPEGEDP 347

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP-DERAELEIHLKNCINHIKDQ 418
           DS +R  GK  FE  + ++  L + L +   ++       + RA L       I +I   
Sbjct: 348 DSLVRKEGKDGFELRMQDADGLSEFLLQTLKDDIDDPASLEGRARLAKLAAPLIKNIPGI 407

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR------------- 465
            LR  + Q +++       +         +     A +   +  +               
Sbjct: 408 ALRSLFWQDLKEHTHIDVDELKQLAESEAKPELAPAPNPMVQSSAASHHHEHYESSYSSY 467

Query: 466 ------LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                   +  +       +        +  L++ P  L+          +     Q L 
Sbjct: 468 DEEMGESREQPIQSTTSGSQEPRLIRQAIAILLHAPQALETFGDTGFLQEFQGPNTQ-LL 526

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             + +   +        +   L +    E  +Q          +    E ++   +    
Sbjct: 527 QQMITALRQSPRQDLLGVLSLLNKEVDAEAYRQFKELAE----YHNKQEGHLSQQQVAMD 582

Query: 580 QALALYKR-FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV-HIQIHQIESQEA 636
             + L  +  + +  +  +   Q   +    E +    L      +  + + Q +  +A
Sbjct: 583 CLVQLRLKAAKNIKARMIKKAAQFGGMRQLPEQD--MQLYQWAAAIVELDLLQAKLTKA 639


>gi|160935058|ref|ZP_02082444.1| hypothetical protein CLOLEP_03934 [Clostridium leptum DSM 753]
 gi|156866511|gb|EDO59883.1| hypothetical protein CLOLEP_03934 [Clostridium leptum DSM 753]
          Length = 597

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 162/607 (26%), Positives = 277/607 (45%), Gaps = 29/607 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P  F+++L     I +++  YV+  R             CPFH EKTPSFH N  +G
Sbjct: 8   MRLPDSFLQELKDRNNILDVVSGYVNLKRSGR-----TMSGLCPFHGEKTPSFHVNAEQG 62

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           +++CF C   GD ++F+  +    +I++V+ LA  AG+ LP  D + E    I+  +   
Sbjct: 63  YFHCFGCGAGGDVITFIRKIENLDYIDAVKFLAQRAGMELPE-DGRDEAAAHIRGRIYEA 121

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A  FFH  L +   K    YL  RG+    I+ F LGY+P+SRY+L   LR  GF +
Sbjct: 122 NREAARFFHRCLYSEEGKNALAYLRGRGLTERTIKHFGLGYSPNSRYALVRQLRSLGFRD 181

Query: 181 EKIIEAGLLIDGDNSAT-SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           E+II A L   G   +  + DRF +R++FPI   RG VI FGGR +   +  KYLN+ +T
Sbjct: 182 EEIIRANLGFQGRYGSKGALDRFADRVMFPIIDLRGNVIGFGGR-IMTDQKPKYLNTSDT 240

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           ++F+K +NLY    A N                 +IL EGYMDV++L QAG    V++LG
Sbjct: 241 MVFNKSQNLYALNFAKNA------------GEKRLILAEGYMDVIALHQAGFPTAVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT  Q RL+ + +   V+C+D D  G +A  +AI +       G  V  + ++ G+DP
Sbjct: 289 TSLTTEQARLIARYAQEAVICYDSDGAGQKATARAIPM---LREAGLLVRVLTVTGGKDP 345

Query: 360 DSFIRCY---GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           D FIR +   G   F++L+  S   V+   ++       + PD +        + +  + 
Sbjct: 346 DEFIRSHGDQGPARFKQLLEASGNDVEYRLQKAANGLDLSQPDGKIAYLTACVSILATLD 405

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR---HRDQKGPSQRLMQSSLVK 473
            +  +  Y+  I   ++      + +     R  +++      R+ +  +     +   +
Sbjct: 406 SKIEQEVYAGRIAAEVEIEKSSVMAQVEKQMRKRRRDQSVQEFREIQKATSGFGDAVNPQ 465

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
              + + +  E AL   +IN+P +     + +    +  +  ++++  +     E +   
Sbjct: 466 KSQNLRAANAEEALTAYVINNPDMANNIEKWIRPDDFVTDFNRRVYETVTGRIRENRPVS 525

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P ++ Q   E+    +   L +         A  +   +  ++     L          R
Sbjct: 526 PTDLTQDFSEQEMSRIAGMLYKASVGGETLEAAKDYCKIIKQEKSSAKLREPLEDDEAKR 585

Query: 594 QKEEIEK 600
             EEI+K
Sbjct: 586 LFEEIQK 592


>gi|21283243|ref|NP_646331.1| DNA primase [Staphylococcus aureus subsp. aureus MW2]
 gi|300911800|ref|ZP_07129243.1| DNA primase [Staphylococcus aureus subsp. aureus TCH70]
 gi|38605351|sp|Q8NWB7|PRIM_STAAW RecName: Full=DNA primase
 gi|21204683|dbj|BAB95379.1| DNA primase [Staphylococcus aureus subsp. aureus MW2]
 gi|300886046|gb|EFK81248.1| DNA primase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 605

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 150/636 (23%), Positives = 263/636 (41%), Gaps = 40/636 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +   +     +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQFNSNVQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L++K
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTLNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----WKKNARHRDQKGPSQRLMQSSLV 472
              L+      +        ++   E                   D+ G         + 
Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQFNQAPANYYPDDEYGGYDEYGGYIEPEPIGMA 461

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           +     +    E A L  L+         Y+ +    + N   + ++  L   + E   +
Sbjct: 462 QFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQY 521

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +  Q +      E L  L++            +    +    Y   +    +     
Sbjct: 522 NISDAVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET--- 570

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
              E +  ++ + T  G+ E     +  +   + + 
Sbjct: 571 --IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 604


>gi|240014314|ref|ZP_04721227.1| DNA primase [Neisseria gonorrhoeae DGI18]
 gi|240016749|ref|ZP_04723289.1| DNA primase [Neisseria gonorrhoeae FA6140]
 gi|240117740|ref|ZP_04731802.1| DNA primase [Neisseria gonorrhoeae PID1]
 gi|240121877|ref|ZP_04734839.1| DNA primase [Neisseria gonorrhoeae PID24-1]
          Length = 620

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 181/608 (29%), Positives = 291/608 (47%), Gaps = 42/608 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I  +I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 32  IPSDFIDELLAKTDIVGIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 86

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 87  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 146

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 147 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 202

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 203 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 259

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 260 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 309

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 310 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 369

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 370 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLVQI 429

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  +    
Sbjct: 430 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 483

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 484 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 536

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + ++ R    +       E +  + + G ++ L   K  ++ + ++
Sbjct: 537 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 596

Query: 596 EEIEKQIA 603
           + ++  + 
Sbjct: 597 KSLQSGLN 604


>gi|296314330|ref|ZP_06864271.1| DNA primase [Neisseria polysaccharea ATCC 43768]
 gi|296838969|gb|EFH22907.1| DNA primase [Neisseria polysaccharea ATCC 43768]
          Length = 590

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 182/601 (30%), Positives = 284/601 (47%), Gaps = 44/601 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL  + I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   L+     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLRFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGKT FE  L+ +S PL +  W+  +++ + NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKTQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLVQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                      +       S           K
Sbjct: 400 TAPALGYLLKQRLSELVGIDPDNLAQLLGQEAPKQHVKQKSYKLPPIS----------VK 449

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 450 QPVMPTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKSHPSVPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSR 593
           +I + +    + E + ++ R V  +       E +  + + G ++ L   K  +   L +
Sbjct: 507 QILEHMRGSPYEETINRIFRSVLQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIEALKQ 566

Query: 594 Q 594
           +
Sbjct: 567 K 567


>gi|240948936|ref|ZP_04753292.1| DNA primase [Actinobacillus minor NM305]
 gi|240296751|gb|EER47362.1| DNA primase [Actinobacillus minor NM305]
          Length = 581

 Score =  356 bits (913), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 176/614 (28%), Positives = 288/614 (46%), Gaps = 55/614 (8%)

Query: 1   MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M    PR FI DL+    I  LI   V   +        +Y ACCPFH EKTPSF  + S
Sbjct: 1   MKGTIPRSFIDDLIARTDIVELINHRVKLKKAGR-----EYHACCPFHHEKTPSFSVSPS 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------K 112
           K FY+CF C   G+ +SFL       F E+++ LAA+ G+ +P  + +           K
Sbjct: 56  KQFYHCFGCGAHGNVISFLMEYDKLEFPEAIEELAALHGLEVPRENLRQSDSRSPQVSYK 115

Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172
            + DL  L+   T F+  +L+     +   YL +RG+    I  F++G+AP++  ++   
Sbjct: 116 AKRDLYGLLSEITQFYQQNLQQDIPSQS--YLQQRGLSPEIIARFEIGFAPNAYDAVLRK 173

Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
             +     +K+ + G+L +   S   YD+FRNR++FPIR  RG+VIAFGGR +   E  K
Sbjct: 174 FGKNPEEVQKLRDTGMLSES-ESGRIYDKFRNRIMFPIRDKRGRVIAFGGRVM-GDERPK 231

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPE+  +HKG  LY  + AL              +  ++ +VEGYMDV++L Q GV+
Sbjct: 232 YLNSPESATYHKGNELYGLYQALQ----------VDENPQYLFVVEGYMDVVALAQFGVE 281

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           N V+SLGTA T  Q++ +++++ +I+ C+DGD  G  AA++A +  L +L  G ++ F+ 
Sbjct: 282 NAVASLGTATTGEQIQQMFRVTEQIICCYDGDRAGRDAAWRAFENALPYLYDGRQLKFIF 341

Query: 353 LSRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           L  GEDPD+F+R  GK+ FE  L   +  L D L+         ++ + +++L       
Sbjct: 342 LPDGEDPDTFVRSQGKSGFEHYLQENAKSLSDFLFDSLLVQVDLSSKEGKSKLASLAIPL 401

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           IN I  + LR Y    +  +L  L    +          K++         +        
Sbjct: 402 INRIPGEMLRVYLRNILGQKLGILDPSQLEALLPNRLQVKQDTPKAQGIKRTPM------ 455

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                          L+  L+ +P +++     L+ ++  +     L+  L     EQ  
Sbjct: 456 -------------RLLIALLLQNPDLVKHVPD-LSPLKELDEAGFDLFVELVQVCREQVG 501

Query: 532 FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANI---VDVRQGYQQALALY 585
                + +   +     +L++L   D  V D  L     E        + +   + L   
Sbjct: 502 VSMGALLEHWRDTPNYTILERLAGWDHLVSDENLEKEFIETLSFLYTKLVEKRVEVLIAK 561

Query: 586 KRFRLLS-RQKEEI 598
           +R + LS  +K+E+
Sbjct: 562 ERTKGLSDEEKQEL 575


>gi|319792618|ref|YP_004154258.1| DNA primase [Variovorax paradoxus EPS]
 gi|315595081|gb|ADU36147.1| DNA primase [Variovorax paradoxus EPS]
          Length = 663

 Score =  356 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 176/687 (25%), Positives = 286/687 (41%), Gaps = 75/687 (10%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P  FI++L+    +  ++G+YV   +   N     +   CPFH EK+PSF  + +K 
Sbjct: 1   MTIPASFIQELIARADVVEIVGRYVPLKKAGAN-----FMGLCPFHGEKSPSFSVSPTKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK------EKIQ 114
           FY+CF C V G+ + FL    G  F+E+V  LA   G+ +P  D    ++       + Q
Sbjct: 56  FYHCFGCGVHGNAIGFLMEHAGMGFVEAVHDLAGQYGLQVPEDDASPAERARAASQRQKQ 115

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  ++E A D +  SL+ A       YL  RG+     + F +GYAP    +L     
Sbjct: 116 ATLTDVLEKAGDAYRKSLRQAPGA--IEYLKGRGVSGEVAKQFGIGYAPAGWRALASVFP 173

Query: 175 QKGF-----SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
                    S   I+         + A  YDRFR+R++FPIR+ +G+ I FGGR L   E
Sbjct: 174 DYDDPLLAESGLVIVNTEDGQLEASEAKRYDRFRDRVMFPIRNVKGECIGFGGRVL-GDE 232

Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289
             KYLNSPET +F KG+ LY  + A    +             + ++ EGYMDV++L Q 
Sbjct: 233 KPKYLNSPETPVFSKGRELYGLYEARAAFR----------DRGYALVTEGYMDVVALAQL 282

Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
           G  N V++LGTA T   ++ L++ +  +V  FDGD  G RAA KA+D  L +      + 
Sbjct: 283 GFPNAVATLGTACTTEHVQKLFRFTESVVFSFDGDAAGRRAARKALDGALPYATDVRSIK 342

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           F+ L    DPDSFIR +G  AF + + E+ PL   + +   E     T + RA +  +++
Sbjct: 343 FLFLPAEHDPDSFIREHGAEAFARFVAEATPLSRFMLEAAREGCDLTTAEGRAHMTSNVR 402

Query: 410 NCINHIKDQKLRYYYSQAIR--------------------DRLQQLFQKYITEHSGYG-- 447
              + + D  L+      I                      ++        +E SG G  
Sbjct: 403 PLWSAMPDGALKRQLLSEIATLVQLDAAALSDLWASTPGPRKVAAPPSPRYSESSGDGGD 462

Query: 448 ------------------RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
                                +K  + +   G  +  ++    +GK   +P +    LL 
Sbjct: 463 YPDMPPPMEFEAPRYETDSKPRKFVKGKRWGGKFEEPIEPLRGRGKPPSRPDVAVRLLLS 522

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +    A+  E +  L D+         L+++L S   E        + + +    F  L
Sbjct: 523 NMAQWDALSHELHLMLCDLP---GTHGALFTWLDSQLHEHGVQPWAALREGMRGLDFEAL 579

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            ++L        +     E ++ D  +     L      R L  Q+ E    + +     
Sbjct: 580 AERLMNVADAVPVPEGEEEQHLADAAKELSSVLDFMLDDR-LKAQQSEAIAAVGKDPKAL 638

Query: 610 EAEKTAILISILHEVHIQIHQIESQEA 636
             E+   L +   E+  ++    S+ A
Sbjct: 639 --ERYKALEARRLELRNRLSPRGSETA 663


>gi|331698220|ref|YP_004334459.1| DNA primase [Pseudonocardia dioxanivorans CB1190]
 gi|326952909|gb|AEA26606.1| DNA primase [Pseudonocardia dioxanivorans CB1190]
          Length = 634

 Score =  356 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 144/647 (22%), Positives = 246/647 (38%), Gaps = 42/647 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I ++     I  +IG+YV   R       G     CPFHDEKTPSF+   + G 
Sbjct: 6   RIRDSDIAEVRDRARIDEVIGEYVALRRAGA----GSLKGLCPFHDEKTPSFNVRPTHGT 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   G  + F+  +    F+E+V+RLA   GV L         +     +T L+ 
Sbjct: 62  FHCFGCGEGGSVIDFVMKIEVVGFVEAVERLAEKVGVRLNYEGGGSSVQRDRGTRTRLLE 121

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A +F+   L+         +L  RG DS A   F  GYAP     L +HL   GF 
Sbjct: 122 ANRRAAEFYAEQLRTPEAAPALQFLTARGFDSAAAATFGCGYAPAGWDLLTKHLLAAGFG 181

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSP 237
            +++++AGL  +        DRF  RL++PIR   G V+ FG R L   +    KYLN+ 
Sbjct: 182 LDELMKAGLSKE--GRRGPIDRFHRRLLWPIRDLGGDVVGFGARRLFDDDGIEAKYLNTT 239

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++ K   L+    A   + +             +++VEGY DV+++  AGV   V+S
Sbjct: 240 ETPVYRKTHVLFGLDLAKREIAR----------RRQVVVVEGYTDVMAMHLAGVPTAVAS 289

Query: 298 LGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA     + ++ +           ++  FDGD  G  AA KA +          +   
Sbjct: 290 CGTAFGAEHVSVIRRLIGDDSFDLGEVIYTFDGDAAGQAAALKAFEGDQSFAA---QTFV 346

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G+DP    +  G TA   L+    PL +   +        +T + R         
Sbjct: 347 SIAPDGQDPCELRQSGGDTAVRDLVARREPLFEFAIRSMLREHDLDTAEGRVAALQRCVP 406

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  I+ + LR  Y++ +             + +   R  ++ A    +    +R     
Sbjct: 407 LVARIRREDLRDEYARRLAGW------TSWDDIAMVVRRVRETAGAPAEPVRGRRSAPPV 460

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
               K   +  L +   +   +  PAI    Y EL +  + +     +   + +      
Sbjct: 461 GAPPKDDPRLHL-QREAVKAALQEPAIAGPAYDELPEAAFSHPAFAGVHRAIAAAGGVCA 519

Query: 531 YFLPEEIHQRLCER---GFGELLKQLDRQVRDAGLWSAT--TEANIVDVRQGYQQALALY 585
                   + +       F  L+ +L  +       +A   +  N +     Y  ++   
Sbjct: 520 GLSGPAWIEAVGAECAPEFRGLVHELAVEPMQLPRKTARASSNGNGLTDEARYVASVVAG 579

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            R  L+  Q  E++ ++ +     EA+    L   L  +      + 
Sbjct: 580 VRLALVEAQIAELKARLQRTNPVEEADAYHQLFGDLVPLEQYRIALR 626


>gi|253681663|ref|ZP_04862460.1| DNA primase [Clostridium botulinum D str. 1873]
 gi|253561375|gb|EES90827.1| DNA primase [Clostridium botulinum D str. 1873]
          Length = 595

 Score =  356 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 167/633 (26%), Positives = 288/633 (45%), Gaps = 41/633 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I+ +     I ++I + V   R         +   CPFH+EKTPSF  ++ K  Y
Sbjct: 2   ISEEIIEKIKEQNNIVDVISESVKLKRTGR-----SFIGLCPFHNEKTPSFSVSEDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+  +F+      SFIE+V+ L     + +   D K +  +     L ++  
Sbjct: 57  KCFGCGEAGNVFTFVMKSRNLSFIEAVKYLGDKVNIHIEDNDEKNKVHKNKNDKLYKINV 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  ++  +L+ +  K  + Y  +RGI +  +  F LGYAP   +++    ++KG++E  
Sbjct: 117 EAARYYFKNLQTS--KEANDYFKKRGILNKTLRRFGLGYAPSGWHNIINFFKKKGYTELD 174

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++ AGL+I G  + + YDRFRNR+IFP+   +G+VI FGGR L      KYLNSPET +F
Sbjct: 175 LLNAGLIIKG-KNNSLYDRFRNRVIFPVFDYKGRVIGFGGRVL-DDSKPKYLNSPETDIF 232

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG NLY    A+    +             II+VEGYMD +SL Q G+ NVV+SLGTAL
Sbjct: 233 KKGTNLYGLNFAIKDNNR------------TIIIVEGYMDCISLYQYGITNVVASLGTAL 280

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q +LL + + +I++ +D D  G  A  + + +       G  +  + +  G+DPD F
Sbjct: 281 TYDQAKLLKRYADKIIVSYDADFAGQNATMRGLKI---LKKQGFDLKVLDIPDGKDPDEF 337

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I+ +GK AF KLI E+LPLVD   K           +   E   +    IN + +   + 
Sbjct: 338 IKNHGKVAFMKLIDEALPLVDYEIKMAKYGLDITNEEMLMEYVNNACKIINKL-NPIEKD 396

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + +    +   Q      +   +Y+ ++ +   +    Q+L         +      
Sbjct: 397 IYIRKLSQETRLKEQAIYDLLNTNNKYYHESQKRYIKDNFGQKLY--------IEPAYMK 448

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            +  L+  + ++    +     +++  +  N  +K+++ +  +  E      E I + + 
Sbjct: 449 TQRNLIKIMTSNIDNYRYIIDIVSEEDFIVNSHKKIFNLIKEEVDENID-NLENISKYIE 507

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +        ++       +     + +I    +G   A     +   L   KEEI K+I
Sbjct: 508 IKC-----DDIESSKEWIKIQQVQLDHDIDY--KGLVDAYIKEIKKFKLEESKEEIMKKI 560

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
               A+G  E++  L+  L  +   I  + + E
Sbjct: 561 KYYEAQGLFEESLNLVKELEIIQNNIMAMNNCE 593


>gi|325144807|gb|EGC67097.1| DNA primase [Neisseria meningitidis M01-240013]
          Length = 590

 Score =  356 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 181/601 (30%), Positives = 289/601 (48%), Gaps = 44/601 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK   +     YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLK--FNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     +++  R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEVGR----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  ++   
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVML--- 454

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                +L +  +   LIN P        +L D    + +   L +   S           
Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAESIKNHAAVPETA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSR 593
           ++ + +    + E + ++      +   ++++E +  + + G ++ L   K  +   L +
Sbjct: 507 QVLEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIEALKQ 566

Query: 594 Q 594
           +
Sbjct: 567 K 567


>gi|160874341|ref|YP_001553657.1| DNA primase [Shewanella baltica OS195]
 gi|304409307|ref|ZP_07390927.1| DNA primase [Shewanella baltica OS183]
 gi|307303665|ref|ZP_07583418.1| DNA primase [Shewanella baltica BA175]
 gi|160859863|gb|ABX48397.1| DNA primase [Shewanella baltica OS195]
 gi|304351825|gb|EFM16223.1| DNA primase [Shewanella baltica OS183]
 gi|306912563|gb|EFN42986.1| DNA primase [Shewanella baltica BA175]
 gi|315266576|gb|ADT93429.1| DNA primase [Shewanella baltica OS678]
          Length = 574

 Score =  356 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 180/620 (29%), Positives = 296/620 (47%), Gaps = 55/620 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+    I  LI + V   +   N     Y ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   G+ + F+       FI++++ LA   G+ +P      ++ +  +  DL +
Sbjct: 56  FYHCFGCGAHGNAIDFVMEYDRLDFIDAIEDLAGQLGLEVPREQGTGKRHDDGLSRDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A+ +F + L+  +DK+    YL  RG+    +E F +G+APD    L    RQ   
Sbjct: 116 LMEEASLYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +++K++ AG+LI  D+    YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 176 AQDKLLTAGMLISNDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +              +++VEGYMDV++L Q GV   V+SL
Sbjct: 234 TPIFHKGNELYGLYELKQRYRDP----------DKVLIVEGYMDVVALAQFGVDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  ++ C+DGD  G  AA++A++  L  L PG++V F+ L + ED
Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK AFE L+V ++ L + L+             ++  L       I  I+D 
Sbjct: 344 PDSMVRKIGKDAFETLMVSAIALPEFLFDTLATKY----GTDKGNLAKQAFILIEKIQDT 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L+    + +  +L     + + +  G+     K   ++  KG    L            
Sbjct: 400 VLQNLLLENLAHKLGMNSSEDMKKKLGFSVKQAKPMANKGLKGRGTPL------------ 447

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                    +  L+ HP +      + A        ++ L   L     EQ      ++ 
Sbjct: 448 ------RLAIALLVQHPKLGMGLPPQPALAHLQMPGIE-LLPLLLEMTREQ-TLNSAQLL 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++  E  +   L +L +            +    ++ + ++Q L ++   + + ++ +E+
Sbjct: 500 EQFREHPYSGTLHKLAQW---------DHQVADENLLEKFKQTL-VWLNNQYIEQRYQEL 549

Query: 599 EKQIAQVTAKGEAEKTAILI 618
              + Q   K E  + + LI
Sbjct: 550 --SLKQTHTKEEKMQLSKLI 567


>gi|21233248|ref|NP_639165.1| DNA primase [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66770190|ref|YP_244952.1| DNA primase [Xanthomonas campestris pv. campestris str. 8004]
 gi|188993401|ref|YP_001905411.1| DNA primase [Xanthomonas campestris pv. campestris str. B100]
 gi|21115082|gb|AAM43056.1| DNA primase [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66575522|gb|AAY50932.1| DNA primase [Xanthomonas campestris pv. campestris str. 8004]
 gi|167735161|emb|CAP53373.1| DNA primase [Xanthomonas campestris pv. campestris]
          Length = 582

 Score =  356 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 170/631 (26%), Positives = 272/631 (43%), Gaps = 59/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    I  ++G  V   R+       +Y A CPFHDE++ SF  + +K F
Sbjct: 3   RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120
           Y+CF C   G  +SFL       F+++V  LA  AG+ +P    +   +++    +L   
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEIPRETQQRTPQQQDDSRELYSA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E AT FF   L+ +   R   YLD RG+D+     F++GYAPD   +L++ L       
Sbjct: 118 LEAATKFFQRQLEGSD--RARDYLDGRGVDAENRARFQIGYAPDGYSALKDTLGTDARRM 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235
             +  AGL    D     YD+FR+R++FPI   RG+VIAFGGR +      +    KYLN
Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LFHKG+ LY  +      QK  R          +I+VEGYMDV+SL Q GV   V
Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T     LL++ +P +  CFDGD+ G +A ++A++ VL  +  G +  F+ L  
Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPD+ +R  G  AF+  + ++ PL    +     + + +T D +A L    K  +  I
Sbjct: 345 GEDPDTIVRKEGAQAFDARLKQATPLSQFFFDEMARDINLHTLDGKARLAERAKPMLAQI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +        Q +                      +   + R          + SLV+  
Sbjct: 405 PEGAFGDLMKQELARMTG---------VGASMSAQQSPPKARPPARMGAPTQKRSLVRAS 455

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                       +  L+  P++      +          ++ L   L +   ++      
Sbjct: 456 ------------IAILLQQPSLAMSLEGDHDFSGLRLPGIELLME-LLALVRQRPEISTG 502

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + +   ER     L++L  Q                         +      +LL ++ 
Sbjct: 503 ALLEHFAEREELVALQKLAAQELPGD----------EHSWAIELHDVVAQLDKQLLRQRV 552

Query: 596 EEIEKQIAQVTAKGEAEKTA--ILISILHEV 624
           EE++ +  +       +K     L+  L  +
Sbjct: 553 EELQAK-QRAQGLDNTDKYEMRELLKALAAL 582


>gi|325205716|gb|ADZ01169.1| DNA primase [Neisseria meningitidis M04-240196]
          Length = 590

 Score =  356 bits (912), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 181/608 (29%), Positives = 292/608 (48%), Gaps = 42/608 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 LYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  +    
Sbjct: 400 TASALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + ++ R    +       E +  + + G ++ L   K  ++ + ++
Sbjct: 507 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 566

Query: 596 EEIEKQIA 603
           + ++  + 
Sbjct: 567 KSLQSGLN 574


>gi|194098358|ref|YP_002001416.1| DNA primase [Neisseria gonorrhoeae NCCP11945]
 gi|193933648|gb|ACF29472.1| DNA primase [Neisseria gonorrhoeae NCCP11945]
          Length = 620

 Score =  356 bits (912), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 182/608 (29%), Positives = 292/608 (48%), Gaps = 42/608 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I  +I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 32  IPSDFIDELLAKTDIVGIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 86

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 87  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 146

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L     VA DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 147 LEETTAVAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 202

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 203 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 259

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 260 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 309

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 310 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 369

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 370 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLVQI 429

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  +    
Sbjct: 430 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 483

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 484 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 536

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + ++ R    +       E +  + + G ++ L   K  ++ + ++
Sbjct: 537 QVLEHMRGSPYEETIDRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 596

Query: 596 EEIEKQIA 603
           + ++  + 
Sbjct: 597 KSLQSGLN 604


>gi|237809410|ref|YP_002893850.1| DNA primase [Tolumonas auensis DSM 9187]
 gi|237501671|gb|ACQ94264.1| DNA primase [Tolumonas auensis DSM 9187]
          Length = 582

 Score =  356 bits (912), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 180/611 (29%), Positives = 289/611 (47%), Gaps = 38/611 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI DLL    I  LI   V   +   N     Y ACCPFH+EK+PSF  +  K F
Sbjct: 4   KIPQSFIDDLLNRTDIVELIDSRVHLKKAGKN-----YQACCPFHNEKSPSFSVSPEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   G+ + F+    G +F ++V  LA + G+ +P   P   +      D  +L+
Sbjct: 59  YHCFGCGAHGNAIGFMMEYDGLNFPDAVGELANLHGLTVPNDQPFHSQGPAPSADHYQLM 118

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E AT +F + LK     +   YL  RG+    ++ F +GYAP     LR+ L +   +E 
Sbjct: 119 EWATRYFQNQLKT--APQAIDYLKGRGLTGEIVKQFAIGYAPGGWDGLRQTLVRSAATEA 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           ++IE G+LI G +   SYDRFR+R++FPIR  RG+VI FGGR L    + KYLNSPET +
Sbjct: 177 QLIELGMLI-GRDGGGSYDRFRDRIMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPETPI 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHKGK L+  +      +   R          I++VEGYMDV++L Q GV   V+SLGT+
Sbjct: 235 FHKGKELFGLYQVKERHRTPAR----------ILIVEGYMDVVALAQFGVDYAVASLGTS 284

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T   + LL++ +  +V C+DGD+ G  AA++A++  L  L  G  + FV L +  DPDS
Sbjct: 285 TTADHMHLLFRTTSEVVCCYDGDNAGREAAWRALENALPGLQDGKDLRFVFLPQEHDPDS 344

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           FIR YG+ AFE+ + ++    D L++R T + + +    + EL       I  + +   R
Sbjct: 345 FIREYGRGAFEQKLDDAQSYADFLFERLTRDLNLSGEAGQNELANKAIALIRRVPEGFNR 404

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                 +  +L+   +        + R  ++  +       S ++  + + +        
Sbjct: 405 ESLLTKLSVQLRWG-ENEKRLREIFHRQEQEAQQTATTHKNSGKIKLTLIRRAIALIVQH 463

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            ++AALL +L   P +L+   +           ++ L S L             ++ +  
Sbjct: 464 PQQAALLPSL---PDVLKSLKE---------PGIEVLLSLLTQL--HNNPMSTGQLLEHW 509

Query: 542 CERGFGELLKQ---LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEE 597
            +   G  L Q   LD       +     +     +    QQ L    +   +S  +K+E
Sbjct: 510 RDTREGRALAQLAMLDEVAVGDNIQQELEDVCDRLLDLYLQQRLDSLLQKNQMSLEEKQE 569

Query: 598 IEKQIAQVTAK 608
           ++  + +    
Sbjct: 570 LQFLLTEYKRS 580


>gi|217974325|ref|YP_002359076.1| DNA primase [Shewanella baltica OS223]
 gi|217499460|gb|ACK47653.1| DNA primase [Shewanella baltica OS223]
          Length = 574

 Score =  356 bits (912), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 180/620 (29%), Positives = 297/620 (47%), Gaps = 55/620 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+    I  LI + V   +   N     Y ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   G+ + F+       FI++++ LA   G+ +P      ++ +  +  DL +
Sbjct: 56  FYHCFGCGAHGNAIDFVMEYDRLDFIDAIEDLAGQLGLEVPREQGTGKRHDDGLSRDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A+ +F + L+  +DK+    YL  RG+    +E F +G+APD    L    RQ   
Sbjct: 116 LMEEASLYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +++K++ AG+LI  D+    YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 176 AQDKLLTAGMLISNDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +              +++VEGYMDV++L Q GV   V+SL
Sbjct: 234 TPIFHKGNELYGLYELKQRYRDP----------DKVLIVEGYMDVVALAQFGVDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  ++ C+DGD  G  AA++A++  L  L PG++V F+ L + ED
Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK AFE L+V ++ L + L+             ++  L       I  I+D 
Sbjct: 344 PDSMVRKIGKDAFETLMVSAIALPEFLFDTLATKY----GTDKGNLAKQAFILIEKIQDT 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L+    +++  +L     + + +  G+     K   ++  KG    L            
Sbjct: 400 VLQNLLLESLAHKLGMNSSEDMKKKLGFSVKQAKPMANKGLKGRGTPL------------ 447

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                    +  L+ HP +      + A        ++ L   L     EQ      ++ 
Sbjct: 448 ------RLAIALLVQHPKLGMGLPPQPALAHLQMPGIE-LLPLLLEMTREQ-TLNSAQLL 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++  E  +   L +L +            +    ++ + ++Q L ++   + + ++ +E+
Sbjct: 500 EQFREHPYSGTLHKLAQW---------DHQVADENLLEKFKQTL-VWLNNQYIEQRYQEL 549

Query: 599 EKQIAQVTAKGEAEKTAILI 618
              + Q   K E  + + LI
Sbjct: 550 --SLKQTHTKEEKMQLSKLI 567


>gi|325142723|gb|EGC65101.1| DNA primase [Neisseria meningitidis 961-5945]
 gi|325198657|gb|ADY94113.1| DNA primase [Neisseria meningitidis G2136]
          Length = 590

 Score =  356 bits (912), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 180/608 (29%), Positives = 295/608 (48%), Gaps = 42/608 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVDYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  ++   
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVML--- 454

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                +L +  +   LIN P        +L D    + +   L +   S           
Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAESIKNHAAVPETA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + ++      +   ++++E +  + + G ++ L   K  ++ + ++
Sbjct: 507 QVLEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIETLKQ 566

Query: 596 EEIEKQIA 603
           + ++  + 
Sbjct: 567 KSLQSGLN 574


>gi|241760553|ref|ZP_04758646.1| DNA primase [Neisseria flavescens SK114]
 gi|241319057|gb|EER55559.1| DNA primase [Neisseria flavescens SK114]
          Length = 590

 Score =  356 bits (912), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 187/629 (29%), Positives = 296/629 (47%), Gaps = 48/629 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL  + I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLSKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMTVPKVRGQEDNPEIRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGKHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS IR YGKT FE  L+ +S PL +  W+  ++  + NT + +AEL       +  I
Sbjct: 340 HDPDSHIRAYGKTQFEDALLNQSKPLSEYFWEHLSDGLNLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + +  K P   + Q +++   
Sbjct: 400 TAPALGYLLKQKLSELVGIDPDNLAQLLGQEA--PKRHVKQKSYKLPPISVKQPTML--- 454

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                +L +  +   LIN PA       +L D    + +   L +   +           
Sbjct: 455 -----TLVQRQIRSLLIN-PAWASYI--DLPDYLALSGDFACLANLAETIKHHDTTPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + Q+      +       E +    + G ++ L   K       Q 
Sbjct: 507 QVLEYMRGSPYEETVNQIFLSTLHSEEMEGDNEEDCESFQIGMKKLLNELK-----YSQI 561

Query: 596 EEIEKQ-IAQVTAKGEAEKTAILISILHE 623
           E ++++ I     + E      L++    
Sbjct: 562 ETLKQKSIQTGLTENEKRLLLSLLTAKQN 590


>gi|91794184|ref|YP_563835.1| DNA primase [Shewanella denitrificans OS217]
 gi|91716186|gb|ABE56112.1| DNA primase [Shewanella denitrificans OS217]
          Length = 574

 Score =  356 bits (912), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 181/626 (28%), Positives = 294/626 (46%), Gaps = 55/626 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+    I  LI + V   +   N       ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELIARTDIVELIDRKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C V G+ + F+       F+++++ LA   G+ +P       + ++ +  DL +
Sbjct: 56  FYHCFGCGVHGNAIDFIMEYDRLEFVDAIEELAGQLGLAVPQEQGTGNRVDQGLSRDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A  F+   L+   DK+    YL  RG+    IE F +G+APD    L    RQ   
Sbjct: 116 LMEEAKLFYQSQLRQHADKQKVIDYLAMRGLSEDVIEHFGIGFAPDGWDGLLSRYRQHPQ 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S++K++ AG+LI  ++S   YDRFR+RL+FPIR  RG+V+ FGGR L +G + KYLNSPE
Sbjct: 176 SQDKLLTAGMLI-ANDSGKRYDRFRDRLMFPIRDRRGRVVGFGGRVLGEG-TPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +              +++VEGYMDV++L Q GV   V+SL
Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------EQVLIVEGYMDVVALAQFGVDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  ++ C+DGD  G  AA++A++  L  L PG++V F+ + +GED
Sbjct: 284 GTSTTAEQFQLLVRSAKEVICCYDGDRAGREAAWRALETALPLLKPGDKVRFMFVPQGED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK AFE+ + ++L L + L+     N   +  D    L       I  ++D 
Sbjct: 344 PDSMVRKVGKDAFEQAMKQALSLPEFLFDTLASNYGTDKGD----LAKQAIGLIEKVQDS 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L+    + +  +L       + +  G+     +    +  +G    L            
Sbjct: 400 VLQNLLLENLAHKLGMNSADDLKKKFGFTVKQSQTVNSKGLQGRGTPL------------ 447

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                    +  L+ HP +                 L  L                E   
Sbjct: 448 ------RLAIALLVQHPDLGLSLA--------PQPALAHLQLAGIELLNHLLTVTRE--- 490

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++L      EL ++  ++     L     +    ++ Q ++Q+L  +   + + ++ +E+
Sbjct: 491 EKLNSAQLLELHREHPQKATLIKLAQWDHQVADDNLIQEFRQSLI-WLNNQYIEQRYQEL 549

Query: 599 EKQIAQVTAKGEAEKTAILISILHEV 624
              + Q   K E  +   LISI+  +
Sbjct: 550 --SLKQTLTKAEKVQLQKLISIMKGL 573


>gi|254519857|ref|ZP_05131913.1| DNA primase [Clostridium sp. 7_2_43FAA]
 gi|226913606|gb|EEH98807.1| DNA primase [Clostridium sp. 7_2_43FAA]
          Length = 592

 Score =  356 bits (912), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 165/631 (26%), Positives = 284/631 (45%), Gaps = 43/631 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + ++ +     I ++I + V   R   N     +   CPFH+EK+PSF  +  K 
Sbjct: 1   MQISEEILEKVKEQNDIVDVISESVRLKRSGRN-----FSGLCPFHNEKSPSFSVSQDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y CF C   G+ ++F+       F+E+V+ LA    + +     +I    K +  L ++
Sbjct: 56  IYKCFGCGESGNVITFVMKNKNMPFVEAVKYLADRVNITIESDKGRISPTAKKRELLYKV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A  FF+ +L+    K    Y   RGI    I+ F LG+A DS  +L  HLR+ GF +
Sbjct: 116 NVEAARFFYSNLRLT--KEAKEYFLNRGIKEETIKRFGLGFAKDSWNNLLFHLRKLGFKD 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++EAGL+   + +   YDRFRNR+IFP+   RG+VI FGGR L      KYLNSPET+
Sbjct: 174 DLLLEAGLVSTSERTGNKYDRFRNRVIFPVFDYRGKVIGFGGRVL-DDSKPKYLNSPETL 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F KG NLY    A+            +    + I+VEGYMD+++L Q G+ NVV+SLGT
Sbjct: 233 VFQKGTNLYGLNFAIKS----------KMQERYFIIVEGYMDLITLHQYGITNVVASLGT 282

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q RLL + + ++++ +D D  G  A  + +D+       G  V  + + +G+DPD
Sbjct: 283 ALTTNQARLLRRYADKVIISYDADIAGQAATMRGLDI---LKDAGFDVRVLSIPQGKDPD 339

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            ++R  GK AF KLI  +  L+D   K+  E  +    ++       +   +  + +   
Sbjct: 340 EYVRSNGKDAFIKLINGAESLIDYRLKKAEEGINLKDSNDLVRYGKRVTEILASV-NSIE 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + I +      Q      S       K     + K       + +  K  L    
Sbjct: 399 KDVYIKKISENTGIREQTLYDLLSKEMTKNIKENDFMNNK-------EENGTKLYLEPAF 451

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E +L+   +N         Q +        E ++++S +     E K      I   
Sbjct: 452 IKAERSLMKLCLNE-EYFDYISQLINQDELILPEHKEIFSII----KEAKKGNINNIITF 506

Query: 541 LCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           L  +    + ++++ +      L     +  I D  +              L+++  E++
Sbjct: 507 LESKCTNVKTIEEIVKIKEHHVLIGKDNKKLIQDFIKQLDN--------YKLNQKLNELK 558

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           ++   + ++G+ E++  +   L  V+ Q+ +
Sbjct: 559 RKQKVLESQGKIEESIQIAIELKNVNDQLKR 589


>gi|325912705|ref|ZP_08175088.1| DNA primase [Lactobacillus iners UPII 60-B]
 gi|329920081|ref|ZP_08276912.1| DNA primase [Lactobacillus iners SPIN 1401G]
 gi|325478126|gb|EGC81255.1| DNA primase [Lactobacillus iners UPII 60-B]
 gi|328936535|gb|EGG32979.1| DNA primase [Lactobacillus iners SPIN 1401G]
          Length = 600

 Score =  356 bits (912), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 162/631 (25%), Positives = 273/631 (43%), Gaps = 41/631 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I ++   + I ++I QYV   ++       DY   CPFH EKTPSF  ++SK F+
Sbjct: 5   IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+   FL      SF ESV  +A IA + +P            +  + ++  
Sbjct: 60  KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117

Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            AT+F+ H L   +  +    Y+ ER + S  I  FK+GYAP +   L   L+QK +S++
Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
            + ++GL I         DRFR+RL+FP+    G  IAF GR +S    + KY+NSPET 
Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K K LY+F  A + +          N+ + +IL EGYMDV++  + G++  V+S+GT
Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NAENHLILYEGYMDVIAAYKCGIKTGVASMGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ +L +++P I++ +DGDDPG  A  +AI L      P   +  V L    DPD
Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNMNLGIVSLPENLDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++ YG   +   +  +    + L +R  +  +     ++ +        I    D   
Sbjct: 344 EYVKKYGPEKYVNEVKAATTSTEFLLQRMAKKYNLFNDRDKLDFINESITLIAKNDDPIE 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477
              Y Q +  +LQ   +          R  +    + +      P+  +    L     S
Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPADEVTPKQLDNVHDS 463

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 +  LL   I++         +     + N   Q+L     S   +         
Sbjct: 464 SASFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLADLWLSYLEKNPNPNISGF 521

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              + +      L+ +   +    +    +E  I D      Q  +L K+  +L  + + 
Sbjct: 522 ADFIPKD-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EIQR 568

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +  QI     K +++    L   + E+  +I
Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599


>gi|121635206|ref|YP_975451.1| DNA primase [Neisseria meningitidis FAM18]
 gi|120866912|emb|CAM10671.1| DNA primase [Neisseria meningitidis FAM18]
 gi|325132680|gb|EGC55364.1| DNA primase [Neisseria meningitidis M6190]
          Length = 590

 Score =  356 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 181/601 (30%), Positives = 290/601 (48%), Gaps = 44/601 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  ++   
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVML--- 454

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                +L +  +   LIN P        +L D    + +   L +   S           
Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAESIKNHAAVPETA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSR 593
           ++ + +    + E + ++      +   ++++E +  + + G ++ L   K  +   L +
Sbjct: 507 QVLEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIEALKQ 566

Query: 594 Q 594
           +
Sbjct: 567 K 567


>gi|78049550|ref|YP_365725.1| DNA primase [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78037980|emb|CAJ25725.1| DNA primase [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 582

 Score =  356 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 169/631 (26%), Positives = 272/631 (43%), Gaps = 59/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    I  ++G  V   R+       +Y A CPFHDE++ SF  + +K F
Sbjct: 3   RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120
           Y+CF C   G  +SFL       F+++V  LA  AG+ +P    +   +++    +L   
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMDIPRETQQRTPQQQDDSRELYSA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           ++ AT FF   L+ +  +R   YLD RG+D+     F++GYAPD   +L++ L       
Sbjct: 118 LDAATKFFQRQLEGS--ERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235
             +  AGL    D     YD+FR+R++FPI   RG+VIAFGGR +      +    KYLN
Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LFHKG+ LY  +      QK  R          +I+VEGYMDV+SL Q GV   V
Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T     LL++ +P +  CFDGD+ G +A ++A++ VL  +  G +  F+ L  
Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPD+ +R  G  AF++ + ++ PL    +   +   + +T D +A L    +  +  I
Sbjct: 345 GEDPDTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPLLAQI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +        Q +                      +   R R          + SLV+  
Sbjct: 405 PEGAFGDLMKQELARLTG---------VGATASAQQSAPRLRLPARVGAPTQKRSLVRAS 455

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                       +  L+  P++                 +  L   L     ++      
Sbjct: 456 ------------IAILLQRPSLAMSLEGVHDFSGLRLPGIDLLME-LLDLVRQRPEISTG 502

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + +   ER     L++L  Q                         +      +LL ++ 
Sbjct: 503 ALLEHFAERQELAALQKLAAQELPGD----------EHSWTLELHDVVAQLDKQLLRQRV 552

Query: 596 EEIEKQIAQVTAKGEAEKTA--ILISILHEV 624
           EE++ +  +     + +K     L+  L  +
Sbjct: 553 EELQAK-QRAQGLDDTDKYEMRELLKALAAL 582


>gi|309378740|emb|CBX22690.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 590

 Score =  356 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 185/601 (30%), Positives = 291/601 (48%), Gaps = 44/601 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVHGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      ATDF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAATDFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGKT FE  L+ +S PL +  W+  +++ + NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKTQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLVQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  +    
Sbjct: 400 TAPALGYLLKQRLSELVGIDPDNLAQLLGQ--ETPKRHVKQKNYKLPPISVKQPVM---- 453

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSR 593
           +I + +    + E + ++ R    +       E +  + + G ++ L   K  +   L +
Sbjct: 507 QILEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIEALKQ 566

Query: 594 Q 594
           +
Sbjct: 567 K 567


>gi|125717670|ref|YP_001034803.1| DNA primase [Streptococcus sanguinis SK36]
 gi|125497587|gb|ABN44253.1| DNA primase (bacterial type), putative [Streptococcus sanguinis
           SK36]
          Length = 602

 Score =  356 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 146/634 (23%), Positives = 269/634 (42%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL V        ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+   A++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARDYLYQRGLTDDALKHFQIGLAPNEGNYLHKSMVGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQEAASDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      + +        
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEVPTQQSQPVVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +I+HP ++  QY+   D  +D+ ELQ L+  L ++  E       
Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QYISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|312872948|ref|ZP_07733008.1| DNA primase [Lactobacillus iners LEAF 2062A-h1]
 gi|311091470|gb|EFQ49854.1| DNA primase [Lactobacillus iners LEAF 2062A-h1]
          Length = 600

 Score =  356 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 162/631 (25%), Positives = 273/631 (43%), Gaps = 41/631 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I ++   + I ++I QYV   ++       DY   CPFH EKTPSF  ++SK F+
Sbjct: 5   IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+   FL      SF ESV  +A IA + +P            +  + ++  
Sbjct: 60  KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117

Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            AT+F+ H L   +  +    Y+ ER + S  I  FK+GYAP +   L   L+QK +S++
Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
            + ++GL I         DRFR+RL+FP+    G  IAF GR +S    + KY+NSPET 
Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K K LY+F  A + +          N+ + +IL EGYMDV++  + G++  V+S+GT
Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NAENHLILYEGYMDVIAAYKCGIKTGVASMGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ +L +++P I++ +DGDDPG  A  +AI L      P   +  V L    DPD
Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNMNLGIVSLPENLDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++ YG   +   +  +    + L +R  +  +     ++ +        I    D   
Sbjct: 344 EYVKKYGPEKYVNEVKAATTSTEFLLQRMAKKYNLFNDRDKLDFINESIALIAKNDDPIE 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477
              Y Q +  +LQ   +          R  +    + +      P+  +    L     S
Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPADEVTPKQLDNVHDS 463

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 +  LL   I++         +     + N   Q+L     S   +         
Sbjct: 464 SASFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLADLWLSYLEKNPNPNISGF 521

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              + +      L+ +   +    +    +E  I D      Q  +L K+  +L  + + 
Sbjct: 522 ADFIPKD-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EIQR 568

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +  QI     K +++    L   + E+  +I
Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599


>gi|261344811|ref|ZP_05972455.1| DNA primase [Providencia rustigianii DSM 4541]
 gi|282567258|gb|EFB72793.1| DNA primase [Providencia rustigianii DSM 4541]
          Length = 581

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 167/623 (26%), Positives = 286/623 (45%), Gaps = 48/623 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +L+   V   ++  N     + ACCPFH+EKTPSF  N  + F
Sbjct: 4   RIPRSFINDLLARTDIIDLVDAKVPLKKQGKN-----HHACCPFHNEKTPSFTVNGDRQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           YYCF C   G+ + FL       F+E+++ L+A+ G+ +P        + +   + +L +
Sbjct: 59  YYCFGCGAHGNAIDFLMNYDKLDFVEAIEELSALHGLDVPYEKGTGTSQIELHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E    F+  +L ++   +   YL +RG+    I  F +G+AP    +L +       S
Sbjct: 119 LMEKINQFYCAALNHSSANKAKDYLSQRGLSPEIIAHFSIGFAPAGWDNLLKKFAVNPES 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            +++ EAG+L+  +++   YDRFR+R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RQQLDEAGMLV-TNDNGRVYDRFRDRVMFPIRDRRGRVIAFGGRVL-GDGVPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ L+  + A     +  +          +++VEGYMDV++L Q  ++  V+SLG
Sbjct: 237 DIFHKGRQLFGLYEATQNSSELAK----------LLVVEGYMDVVALAQYDIRYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLYRSTDTVICCYDGDRAGREAAWRALENALPYLTDGRQIRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS +R  GK AFE+ +  +L L   L+          T + RA++       I  I  + 
Sbjct: 347 DSLVRKEGKDAFEQRMENALSLSTFLFDSLVPQVDLKTQEGRAKISKLAIPLIKQIPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y +Q + + +       +          + N +    K  +                
Sbjct: 407 LRLYMAQELGNFIGIPDISQVLAMIDRENTEQINYQAPKLKPTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P   +               L  L+  L             ++ +
Sbjct: 452 -----RILIALLVQNPNFSEFVPSLEGIAHIQMPGL-SLFQELVEVCRSTPGMTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           R  +  F + L++L     D  +        I  +   +  AL     + +        +
Sbjct: 506 RYRDNKFAKQLEKLATW-NDIEIEEIAENTFIDALNHLFNSALDERFDYLI-------AK 557

Query: 600 KQIAQVTAKGEAEKTAILISILH 622
           ++  ++T +   E   I +S + 
Sbjct: 558 ERTQRLTPEEREEVRLITLSRVK 580


>gi|184201289|ref|YP_001855496.1| DNA primase [Kocuria rhizophila DC2201]
 gi|183581519|dbj|BAG29990.1| DNA primase [Kocuria rhizophila DC2201]
          Length = 668

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 150/686 (21%), Positives = 260/686 (37%), Gaps = 82/686 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ I ++     I  ++ QYV           G Y   CPFHDE++PSFH     G Y
Sbjct: 5   IKREDIDEVRARTDIREVVEQYVTLKPAG----IGSYKGLCPFHDERSPSFHVRPQMGTY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
           +CF C   GD ++FL  +    F E+V+RLAA  G  L         +E+   +  L+  
Sbjct: 61  HCFGCDESGDVIAFLMEMDHTPFTETVERLAARIGYELHYEQGGAPNREEVGRRQRLLDA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            +VA +FF  +L   +      +L ERG D  A   + +GYAP     L  HLR +GF+E
Sbjct: 121 HKVAAEFFQRNLYTRQAAAAQKFLGERGFDQDAARTYGVGYAPQGWSHLLNHLRNQGFTE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
           +++   G+  +G+     YDRFR RLI+PIR+  G+VI FG R L + +   KYLN+PET
Sbjct: 181 QELKLTGMFSEGNR--GLYDRFRGRLIWPIRAVAGEVIGFGARKLYEDDQGPKYLNTPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            L+ K + LY    A   + K          +  +++VEGY DV++   AGV   V++ G
Sbjct: 239 QLYKKSQVLYGIDLAKRPIAK----------TKQVVVVEGYTDVMACHLAGVATAVATCG 288

Query: 300 TALTEYQLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           TA     ++++ +          +V  FDGD  G +AA +A       +    +    + 
Sbjct: 289 TAFGPEHIKIVRRFLSDDSAGGEVVFTFDGDAAGQKAALRAFQEDQRFVA---QTYVAVE 345

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  A   L+    PL +   +   +    N+ + R          + 
Sbjct: 346 PNGMDPCDLRLARGDVAVRDLVETRTPLFEFALRATIKEYDVNSLEGRLRAMRACAPIVA 405

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---------------------- 451
            I+D  LR  Y++ +   L     + +   S   +  +                      
Sbjct: 406 QIRDSSLRPAYARELSGWLGIETDEVMRAVSAAAKSAQRGGSGSAGSGPSGAVASSSGRS 465

Query: 452 -----------------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR------EAALL 488
                            +  + +     +      S  + +  + P  R      E   L
Sbjct: 466 NSGYDGARGPQQAQGPSRGGQDQRAPRATSGARDDSPEEPRSVELPDPREPVSRMEREAL 525

Query: 489 LTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVE--QKYFLPEEIHQRLCERG 545
             ++  P ++    +             Q +   +     +  +         + +    
Sbjct: 526 EVVLQVPDLVPLPYWAHFDSAGMTYRVHQVMHDAVVGARADLGEGVQGGRVWLESVRNHL 585

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
              L   L +        +    A    +R      +        ++R+K +    + ++
Sbjct: 586 PEPLHGYLAQLSV-----TPLPAATEQQMRNYAVGVITSLVEMH-INREKSDKLAHLNRL 639

Query: 606 TAKGEAEKTAILISILHEVHIQIHQI 631
            A+ E +    L   L ++ +Q   +
Sbjct: 640 NAQREPDLYQQLNRELLDLELQRRSL 665


>gi|126173384|ref|YP_001049533.1| DNA primase [Shewanella baltica OS155]
 gi|125996589|gb|ABN60664.1| DNA primase [Shewanella baltica OS155]
          Length = 574

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 180/620 (29%), Positives = 295/620 (47%), Gaps = 55/620 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+    I  LI + V   +   N     Y ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   G+ + F+       FI++++ LA   G+ +P      ++ +  +  DL +
Sbjct: 56  FYHCFGCGAHGNAIDFVMEYDRLDFIDAIEDLAGQLGLEVPREQGTGKRHDDGLSRDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A+ +F + L+  +DK+    YL  RG+    +E F +G+APD    L    RQ   
Sbjct: 116 LMEEASLYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +++K++ AG+LI  D+    YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 176 AQDKLLTAGMLISNDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY         +              +++VEGYMDV++L Q GV   V+SL
Sbjct: 234 TPIFHKGNELYGLHELKQRYRDP----------DKVLIVEGYMDVVALAQFGVDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  ++ C+DGD  G  AA++A++  L  L PG++V F+ L + ED
Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK AFE L+V ++ L + L+             ++  L       I  I+D 
Sbjct: 344 PDSMVRKIGKDAFETLMVSAIALPEFLFDTLATKY----GTDKGNLAKQAFILIEKIQDT 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L+    + +  +L     + + +  G+     K   ++  KG    L            
Sbjct: 400 VLQNLLLENLAHKLGMNSSEDMKKKLGFSVKQAKPMANKGLKGRGTPL------------ 447

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                    +  L+ HP +      + A        ++ L   L     EQ      ++ 
Sbjct: 448 ------RLAIALLVQHPKLGMGLPPQPALAHLQMPGIE-LLPLLLEMTREQ-TLNSAQLL 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++  E  +   L +L +            +    ++ + ++Q L ++   + + ++ +E+
Sbjct: 500 EQFREHPYSGTLHKLAQW---------DHQVADENLLEKFKQTL-VWLNNQYIEQRYQEL 549

Query: 599 EKQIAQVTAKGEAEKTAILI 618
              + Q   K E  + + LI
Sbjct: 550 --SLKQTHTKEEKMQLSKLI 567


>gi|254428780|ref|ZP_05042487.1| DNA primase catalytic core, N-terminal domain family [Alcanivorax
           sp. DG881]
 gi|196194949|gb|EDX89908.1| DNA primase catalytic core, N-terminal domain family [Alcanivorax
           sp. DG881]
          Length = 649

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 185/681 (27%), Positives = 290/681 (42%), Gaps = 89/681 (13%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P +F  DLL    +  LI   V   +   N     Y ACCPFH EKTPSF     K F
Sbjct: 3   RIPENFTHDLLARTDLVELIDARVPLKKTGRN-----YSACCPFHQEKTPSFTVAPDKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLI 118
           YYCF C   G+ + FL      SF E+V++LA+ AG+ +P   P+     +K+     L 
Sbjct: 58  YYCFGCGASGNAVGFLMEYEHLSFPEAVKQLASRAGMEVPESRPETAADRQKKDRLQSLY 117

Query: 119 RLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L+  A  F+   L+     ++   YL  RG+     + F +G+AP    +L   L    
Sbjct: 118 DLLSRAEKFYAQQLRQAPERQKAVNYLKNRGLSGEIAKKFAIGFAPPGYDNLINGLSLTE 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S E  +  GLL+  D++  +YD+FR+R+IFPIR SRG+ I FGGR L      KYLNSP
Sbjct: 178 TSLEHALTGGLLVRKDDTGRTYDKFRDRIIFPIRDSRGRTIGFGGRVL-GDGKPKYLNSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHKG+ LY  +       +S R          + +VEGYMDV++L Q GV NVV++
Sbjct: 237 ETPVFHKGQELYGLWEWRQSRDRSDR----------LYVVEGYMDVIALTQHGVPNVVAT 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA TE   R L++    ++LCFDGD  G+RAA++A++ +L  L  G +V F+ L  GE
Sbjct: 287 LGTATTEDHARKLFRQVNEVILCFDGDKAGVRAAWRALESLLPALDDGKQVRFLFLPDGE 346

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD+ +R  G  A   L  ++  L   L++  +E    +T D RA L       ++    
Sbjct: 347 DPDTLVRQQGPEALRALTDKADTLSTYLFRHLSEGLDLDTVDGRARLARLALPFLDKPAG 406

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP--------------- 462
              R   ++ +  RL +L ++ + +        +  A     K P               
Sbjct: 407 PVYRALLTEELS-RLTRLDKESLIQLKPAPAAPRPTAAPAPSKPPQDATAYGYENAGYPP 465

Query: 463 -----------------------------SQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
                                        S    + +  +    K P      L+L L++
Sbjct: 466 AEDDPGMPYPEDFGFADDGNQGNAGFNGGSPNRTRPNPRQNSGRKGPLTLAERLVLVLLD 525

Query: 494 HPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           +P+++ +    + +  +   + +L  L        + ++      +   L     GE L 
Sbjct: 526 YPSLIDQHPLPEGIDTLPLPHIDL--LVQV---AGLCRQSHSAAALLGALMALEQGETLS 580

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           +L +        S           + +  AL+          +   +E  + +V   G  
Sbjct: 581 RLLKA-------SLKPPMAEEMATRLWLDALS--------QLEVTRLEAALLEVEQAGMP 625

Query: 612 EKT--AILISILHEVHIQIHQ 630
           +      L   L E      +
Sbjct: 626 DPAHWQALHKALAEARQHARK 646


>gi|314933734|ref|ZP_07841099.1| DNA primase [Staphylococcus caprae C87]
 gi|313653884|gb|EFS17641.1| DNA primase [Staphylococcus caprae C87]
          Length = 594

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 154/631 (24%), Positives = 265/631 (41%), Gaps = 44/631 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSVINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDL 117
             +CF C   G+   F   +    F+E+V+ L     + + V   +  ++ +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDVPFVEAVKELGERVNIKVDVGQTQYNQQSQMASDDLKM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  D++H++L K    +    YL +RG     I+  ++GYAPDS +   + L +K
Sbjct: 116 IEMHELIQDYYHYALMKTVEGEEALNYLRQRGFTDELIKQRQIGYAPDSSHFCHDFLEKK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT    +  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YNNQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K + LYN   A   ++           +  I+L+EG+MDV+    AG++ VV+
Sbjct: 235 PETPIFQKRRLLYNLDKARKSIR----------QNDEIVLLEGFMDVIKSDYAGLKQVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S+GT L++  +  L KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 SMGTQLSQEHMTFLKKLTNNITLMFDGDYAGREATLKTGQ---ALLQQGLNVYVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   + +      +      ++   N             + I  ++
Sbjct: 342 MDPDEYIGKYGNEAFLNFVAKDKKAFVLFKVESHQDEINNNDLAYERHFREATHDIAQVQ 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              LR    Q + +      +    E           A +        +L          
Sbjct: 402 STILRNKLIQDVANIFNMSPEMIYHEIGSNNMPQVAPAEYGYSPQSGSQLF-------NN 454

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             K    E ALL   +         YQ+++D  + N   + +++ L   F E   +   +
Sbjct: 455 LTKNEKAERALLKHFMKDKDTFINYYQKISDDDFTNKYFKSIFNILHDYFSEHDNYSISD 514

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + Q +      E   +LD+   +        +    +  + Y   +             E
Sbjct: 515 VMQYIDSNELREAFIELDQYTLN--------DEPYENEIEDYILIINNND-----DESIE 561

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            +  ++ +    G+ E        L  V  +
Sbjct: 562 SLNHKLREAYRIGDVE-LQKYYLQLIVVKNK 591


>gi|322513555|ref|ZP_08066655.1| DNA primase [Actinobacillus ureae ATCC 25976]
 gi|322120626|gb|EFX92520.1| DNA primase [Actinobacillus ureae ATCC 25976]
          Length = 580

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 176/618 (28%), Positives = 284/618 (45%), Gaps = 52/618 (8%)

Query: 1   MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M    PR FI DL+    I  LI   V   +        DY ACCPFH EK+PSF  + S
Sbjct: 1   MKGTIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQS 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKI 113
           K FY+CF C   G+ +SFL       F E+++ LAA+ G+ +P       D K +   K 
Sbjct: 56  KQFYHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVIARDGKPQASYKT 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + +L  L+E  + F+  +L      +   YL  RG+    I  F++G+A +S  S+    
Sbjct: 116 KRNLYELLEAISQFYQQNLTQDIPSQS--YLQSRGLSPEIIARFEIGFAHNSMDSVLRKF 173

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
                 E + +    +I  ++S   YD+FRNR++FPIR  RG+VIAFGGR +   E  KY
Sbjct: 174 GT-NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKY 231

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPE+  +HKG  LY  F  L           +  + + +++VEGYMDV++L Q GV N
Sbjct: 232 LNSPESATYHKGNELYGLFHTLQ----------QNENPTSLVVVEGYMDVVALAQFGVDN 281

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           VV+SLGTA T  Q++ +++++ +++ C+DGD  G  AA++A +  L +L  G ++ F+ L
Sbjct: 282 VVASLGTATTGEQIKQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFL 341

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             GEDPDSF+R +GK  FE  +  ++ L D L+         ++ + +++L       IN
Sbjct: 342 PDGEDPDSFVRAHGKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAVPLIN 401

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            I  + LR Y    +  +L  L    +           +    +  +     +       
Sbjct: 402 RIPGEMLRVYLRNILGQKLGILDPAQLEAMLPSRVQSVQKLAVQPLQIKRTPM------- 454

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                        L+  L+ +P +++      A    D    + L   L     ++    
Sbjct: 455 -----------RLLIALLLQNPELVKFVPDISALKTLDEPGFELLLE-LVDVCQQKVGVS 502

Query: 534 PEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANI---VDVRQGYQQALALYKR 587
              + +   ++     L+ L   D  V    + S   E        + +   + L    R
Sbjct: 503 MGALLEHWRDKPNYRTLELLANWDHLVTPENIESTFIETLDFLYAKLVEKRIEVLIAKDR 562

Query: 588 FRLLS-RQKEEIEKQIAQ 604
              L+  +K+E+   IAQ
Sbjct: 563 TIGLNAEEKQELVMLIAQ 580


>gi|116333402|ref|YP_794929.1| DNA primase [Lactobacillus brevis ATCC 367]
 gi|116098749|gb|ABJ63898.1| DNA primase [Lactobacillus brevis ATCC 367]
          Length = 612

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 154/638 (24%), Positives = 290/638 (45%), Gaps = 41/638 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P D I+ +     I++++GQYV   +   N      +  CPFH+E+TPSF   + K  
Sbjct: 3   KIPEDVIETVRTATNIADVVGQYVQLKKSGKNL-----FGLCPFHEERTPSFSVAEDKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CFSC   G+   FL  L   +F E+V ++A  + V L      D +    +   + LI
Sbjct: 58  FHCFSCGRGGNVFKFLMELEHVTFPEAVVKVADFSHVDLDSEYRQDAQGPAVDSKTSQLI 117

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A   +HH L      +    YL +RG+    IE ++LG+AP  R  L+    Q+ 
Sbjct: 118 ALQEQAAKLYHHILVNTEVGQPALDYLHQRGLTDETIETYQLGFAPGQR-LLKPFFDQRN 176

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNS 236
              + + ++GL I+        DRF  R++FP+R++ G V AF GR +       KYLNS
Sbjct: 177 SDYQLLRQSGLFIEN-AQGELRDRFTERVMFPLRNASGHVTAFSGRLMQPADNQPKYLNS 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET LF+K + L+NF  A   ++           +  + L EGYMDV+S  QAGV+N ++
Sbjct: 236 PETTLFNKSRLLFNFDLARPAIR----------EAGEVTLFEGYMDVISATQAGVRNGIA 285

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S+GT+LT  Q+  + + + ++ +C+DGD+PG RA  +A+ L+  H     +++ + L  G
Sbjct: 286 SMGTSLTTEQIYAIERTTDKLNVCYDGDEPGQRAISRALGLLNQHSH--LQLSVIQLPEG 343

Query: 357 EDPDSFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           +DPD + + +G  AF++++  +    +    +    N++ +T  ER +    +   +  +
Sbjct: 344 QDPDEYRQAHGDVAFKQMMTTAKETPIKFQLRFLRRNKALDTDAERLDYVNQVMPLLAQV 403

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR---YWKKNARHRDQKGPSQRLMQSSLV 472
           ++      Y   +    +      + +     R      +  R R+ +        +   
Sbjct: 404 QEPVELDLYLNQLATEFKIDKSALLAQLKQTQRDVAAQAERDRPREPEKAPVAPPVTVYQ 463

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           + +   +    E  LL  L++   +  +    +AD  + +++ Q +++     F   + +
Sbjct: 464 QQRPLTRLERAERNLLYHLLHDRNVWAKV-SSVADFCFVHDDYQVIYTLAQGYFQTHQTY 522

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +    + E    +L+ +L+     A               +     LA+      + 
Sbjct: 523 QTAQFTDFIQEDRLQQLVIELETTTHAAATP------------REIDDYLAVIMNEAPVD 570

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            Q  + + Q+A+ +  G+AE+   L+  + ++  Q   
Sbjct: 571 EQLRQKKNQLAEASRLGDAEQQRQLVIEIVQLERQRQA 608


>gi|167037156|ref|YP_001664734.1| DNA primase [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115575|ref|YP_004185734.1| DNA primase [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166855990|gb|ABY94398.1| DNA primase [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928666|gb|ADV79351.1| DNA primase [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 595

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 158/635 (24%), Positives = 291/635 (45%), Gaps = 43/635 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y ++ I+ ++    I ++I +YV+  +        ++   CPFH EKTPSF  +  K 
Sbjct: 1   MAYSKEMIEKVIEANDIIDVISEYVELKKAGK-----EFKGLCPFHREKTPSFMVSQEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDLI 118
            Y+CF C+  G+ ++F+  +   +F E+++ LA   G+ L        + ++ +   ++ 
Sbjct: 56  VYHCFGCNASGNVVTFIMDIENLTFKEAIEFLADRVGITLEETVLTEREYQRKKLIDEIY 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           ++ ++AT +F++ L +   ++   Y+ +RG+    I+ F +GY+      L   L++KG+
Sbjct: 116 KVNKLATMYFYNKLFSEEGRQALTYIRKRGLTEATIKKFGIGYSSPHGNGLLNFLKEKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +E  +++AGLL     +   YDRFRNR++FPI   +G VI FGGR++      KYLN+PE
Sbjct: 176 TESFLVKAGLLSQ--KNNRYYDRFRNRVMFPIIDVKGNVIGFGGRSI-DDSLPKYLNTPE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F KGK L+    A                    I+VEGYMD +SL QAG+   V+SL
Sbjct: 233 TEVFKKGKTLFAINFAKK------------TQQDKFIIVEGYMDAISLHQAGIDCAVASL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE Q RL+ +    +V+ +D D+ G+ AA + +D+          +  + +  G+D
Sbjct: 281 GTALTEDQARLIKRYKGNVVIAYDADEAGISAALRGLDI---LDELNLNIKVLTIPYGKD 337

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AF +LI  +  L++   K   +N   + P +R      +   I  + D+
Sbjct: 338 PDEFIKKEGVNAFNQLIENADSLIEFKAKVFRKNLDLDNPQDRIIYVKKIAKDIAKLSDE 397

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y  +     Q       TE + +     +  +       + R    S  K     
Sbjct: 398 VKREVYISSAAKVAQIPENAVRTEVARFVNREIEKNQKNMYMAGNIRHNIYSSSKISP-- 455

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E  L+  L+    + +   + +     +N +L+ ++  + S   + K     +I 
Sbjct: 456 -----EKYLIALLLYDNNLYKRVKETITADMLENVKLKPIFGEIMSRLEDGKKTQINDIV 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L E         + +   ++            +V +     +        L+ ++E+I
Sbjct: 511 YLLQEENLISDFNDIIKAFYES-----------ENVTEQAVDDIINKILINSLAVKREKI 559

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++ I +    G+ EK   L+  L     ++ +I++
Sbjct: 560 KRAINEAHMLGDIEKERQLLIELQNCEKEMLKIKN 594


>gi|312874198|ref|ZP_07734232.1| DNA primase [Lactobacillus iners LEAF 2052A-d]
 gi|311090268|gb|EFQ48678.1| DNA primase [Lactobacillus iners LEAF 2052A-d]
          Length = 600

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 162/631 (25%), Positives = 275/631 (43%), Gaps = 41/631 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I ++   + I ++I QYV   ++       DY   CPFH EKTPSF  ++SK F+
Sbjct: 5   IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+   FL      SF ESV  +A IA + +P            +  + ++  
Sbjct: 60  KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117

Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            AT+F+ H L   +  +    Y+ ER + S  I  FK+GYAP +   L   L+QK +S++
Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERDLTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
            + ++GL I         DRFR+RL+FP+    G  IAF GR +S    + KY+NSPET 
Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K K LY+F  A + +          N  + +IL EGYMDV++  + G++  V+S+GT
Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NVENHLILYEGYMDVIAAYKCGIKTGVASMGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ +L +++P I++ +DGDDPG  A  +AI L      P   +  V L    DPD
Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNINLGIVSLPENLDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++ YG   +   +  ++   + L +R ++  +     ++ +        I    D   
Sbjct: 344 EYVKKYGPEKYVNEVKAAITSTEFLLQRMSKKYNLFNDRDKLDFINESIALIAKNDDPIE 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477
              Y Q +  +LQ   +          R  +    + +      P+  +    L     S
Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPTDEVTPKQLDHVHSS 463

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 +  LL   I++         +     + N   Q+L +   S   +         
Sbjct: 464 SVSFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLANLWLSYLEKNPNPNISGF 521

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              + +      L+ +   +    +    +E  I D      Q  +L K+  +L  + + 
Sbjct: 522 ADFIPKD-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EMQR 568

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +  QI     K +++    L   + E+  +I
Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599


>gi|315634866|ref|ZP_07890148.1| DNA primase [Aggregatibacter segnis ATCC 33393]
 gi|315476418|gb|EFU67168.1| DNA primase [Aggregatibacter segnis ATCC 33393]
          Length = 586

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 174/630 (27%), Positives = 289/630 (45%), Gaps = 53/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI D+L  I I +LI   V   +        DY ACCPFH EKTPSF  +D K F
Sbjct: 4   SIPRTFIDDILTKINIVDLINSRVKLKKAGR-----DYQACCPFHHEKTPSFTVSDKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------DPKIEKKEKIQT 115
           Y+CF C   G+ +SFL       F+E+V+ LA   G+ +P        D   +   + + 
Sbjct: 59  YHCFGCGAHGNAISFLMEYDKLEFVEAVEELAGFLGLEIPYEKRPHFNDNGKQVGYQTKR 118

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           +L  L++    F+   L    +     YL +RG+ +  IE F++GY P++  ++     +
Sbjct: 119 NLYELMQEIAKFYQQQL--PLNIPAQSYLQQRGLSAEIIERFQIGYVPNAMDTVYRQFGK 176

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
               ++K+ + G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLN
Sbjct: 177 TREEQQKLFDLGMLSRNDRG-NVYDKFRNRIMFPIRDRRGRTVAFGGRVL-TDEKPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPETI +HKG  LY  F AL             +S   +++VEGYMDV++L Q GV   V
Sbjct: 235 SPETITYHKGSELYGLFEALQA----------DDSPQKLLVVEGYMDVVALAQFGVNYAV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +SLGT+ T  Q++LL++ + +++ C+DGD  G  AA++A++  L ++  G ++ F+ L  
Sbjct: 285 ASLGTSTTSEQIQLLFRSTEQVICCYDGDRAGRDAAWRALENALPYMEDGRQLKFIFLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            EDPDSFIR YGK  FE+ I ++  L + L+   T    F++ + +A+L       I  I
Sbjct: 345 DEDPDSFIRQYGKQGFEEYIEKAQSLSEFLFAHLTPKVDFSSKEGKAKLAALAIPLIKQI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               LR      +  +L  L    +          +     +  +     +         
Sbjct: 405 PGDVLRLDLRNMLAKKLGILDPTQLESLMPNQAKQENEPVAQGIQFKPTPM--------- 455

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                      L+  L+ +P ++ +   +L  ++  +     L+  L +   E+      
Sbjct: 456 ---------RILVALLLQNPELV-KFVPDLEPLKNLDEPGYDLFVELTALCREKVGISAG 505

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ +   +    + L++L              +  I D  +   +   L    + +    
Sbjct: 506 QLLEHWRDTKQQKTLEKLLAWN------HLIEDDKIEDTFRETLRYFYLQLVDKRIHWLI 559

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVH 625
               K  A+     E ++ + L+    E  
Sbjct: 560 A---KDRAEGLDLNEKKELSHLLVKKQEKK 586


>gi|264677332|ref|YP_003277238.1| DNA primase [Comamonas testosteroni CNB-2]
 gi|262207844|gb|ACY31942.1| DNA primase [Comamonas testosteroni CNB-2]
          Length = 688

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 172/688 (25%), Positives = 288/688 (41%), Gaps = 94/688 (13%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI++LL  + + +++G+YV   +   N     +   CPFH EK+PSF  + SK F
Sbjct: 29  AIPQSFIQELLSRVDVVDIVGRYVQLKKGGAN-----FMGLCPFHSEKSPSFTVSPSKQF 83

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK------KEKIQT 115
           ++CF C   G+ + FL    G  F+E+VQ LA   G+ +P  D    +      +++   
Sbjct: 84  FHCFGCGKNGNAIGFLMEHAGMGFVEAVQELANQCGLQVPQDDISPAERQRQAQQKQKAE 143

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L  L+E A + +   LK     +   YL +RG+     + F LGYAP   + L      
Sbjct: 144 TLSDLLEKAGESYRKQLKA--APKAIEYLKKRGVSGEVSKRFGLGYAPAGWHGLASVFA- 200

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
             +   ++ E GL+I G++ +  YDRFR+RL+FPIR+ +G+ I FGGR     E  KYLN
Sbjct: 201 -EYDNPQLEECGLVIVGEDDSRRYDRFRDRLMFPIRNVKGEYIGFGGRVF-GDEKPKYLN 258

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +FHKG+ LY  + A   L+             + ++ EGYMDV++L Q G  N +
Sbjct: 259 SPETPVFHKGRELYGLYEARQALR----------DMGYALVTEGYMDVVALAQLGFANAL 308

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T   ++ L++ +  +V  FDGD  G RAA KA+D  L        + F+ L  
Sbjct: 309 ATLGTACTPEHVQKLFRFTDAVVFSFDGDGAGRRAARKALDAALPLATDTRSIKFLFLPS 368

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPDSFIR +G  AF + + ++ PL   L +  +E       + RA +  + +   + +
Sbjct: 369 EHDPDSFIREFGPEAFSRYVGDATPLSRFLIESASEGCDLGQTEGRAHMASNARPLWSLL 428

Query: 416 KDQKLRYYYSQAIRDR-------LQQLFQKYITEHSGYGRYWK----------------- 451
            D  L+      I          L  ++ +     +   R                    
Sbjct: 429 PDGALKRQLLSEIAALAQLDSRDLSDIWAQEAARTAPIARRAPAPPGPQAPEWDAPAGNW 488

Query: 452 ---------------------------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                                      +    R +K   ++    +  +      P  RE
Sbjct: 489 ESAPDWADAAAPAPSYPSQGSGGNWSGRKEFGRQRKPWGKKGEDWNPPQLGPRPTPVSRE 548

Query: 485 AALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
                 L+ H   ++E  +++   +   N     L+ +L + F E        + ++L  
Sbjct: 549 DQAARLLMCHMEFMEEMTHEDFDALARCNQSHAPLFRWLEAQFTESGPRSWAVLREQLQG 608

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                L ++L           A  E  + ++R+  +  L L      L R++ +  K+IA
Sbjct: 609 SPCEPLAQKLMSGA------HANPEGEVDELRKELRGTLNLIL-VDHLKREEAKALKEIA 661

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI 631
                              E   +   +
Sbjct: 662 TDPTAA---------RRYIEFQQRRKNL 680


>gi|294506978|ref|YP_003571036.1| DNA primase [Salinibacter ruber M8]
 gi|294343306|emb|CBH24084.1| DNA primase [Salinibacter ruber M8]
          Length = 655

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 173/674 (25%), Positives = 282/674 (41%), Gaps = 59/674 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P + I+++   + +  +   YV   +  +      Y   CPFH+E TPSF  +  + 
Sbjct: 1   MAIPDEKIEEVRTAVDLVEVAEDYVQLKQSGS-----RYMGLCPFHNEDTPSFSVDPDQN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            YYCF C   GD   F+  + G  F+ESV+ LA   GVPLP  +         +  ++  
Sbjct: 56  LYYCFGCQNGGDAFKFVQEIEGVGFLESVRMLADRYGVPLPEEET-DPDAANEREAVLHA 114

Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A  FF+  L ++ R +    YL  RG     I+ F LGYAPD   +L     ++   
Sbjct: 115 LRFAARFFYRQLTQSDRGRPALDYLRRRGFTPQTIKQFGLGYAPDEWDALLTVAEEEQID 174

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG---ESVKYLNS 236
            E + +AGL+I+ ++ +  YDR+R R+IFPI S  G+V+AF GR L      +  KY+NS
Sbjct: 175 RETLEKAGLIIERNDGSGYYDRYRGRIIFPIFSHIGKVLAFAGRILDPDDERDQPKYINS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET ++HK + LY    A   ++K          +  ++LVEGY DV+SL QAGV NVV+
Sbjct: 235 PETEVYHKKEVLYGLHQAKQAIRK----------TDEVLLVEGYTDVISLSQAGVGNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S GTALTE Q+  L + + R V+ +D D+ G RAA + ++ VL     G     V L  G
Sbjct: 285 SSGTALTEQQISTLDRYAKRAVMLYDADEAGERAALRGMERVL---EAGLGAYAVELPAG 341

Query: 357 EDPDSFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPD +++ +G  AF          L    ++R   N    TP++R E++  +   +  I
Sbjct: 342 NDPDEYVQEHGGDAFSDYVQEHRQDLPSFAYQRARRNGVLETPEDRVEVQREIIESVARI 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYIT--------------------------EHSGYGRY 449
            D  LR  Y     D                                     +       
Sbjct: 402 PDPNLRREYVAHTSDVTGVPDSDLFRMLEEEREQMERRAQRRRKREQKRQQRQAEEGASP 461

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH-PAILQEQYQELADI 508
             + A   D+ G S     S+  K          E  L   ++ +   ++      +A  
Sbjct: 462 SGEQAAPPDRNGASPPPPNSTTGKTASGPALLPEERVLFRLMLENGRRMVSLVLGHMALD 521

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA-GLWSATT 567
            +     +     L   + E     P++I          +L   +     +A   W+   
Sbjct: 522 EFSEGAPRDFARALAEMY-EDGTVRPQQILNGEHGEALQQLGASVMMDEHEASEHWAQKE 580

Query: 568 EANIVDVRQGYQQALAL---YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI---L 621
           + ++  +     +A      + +   +    E + +++ Q + +G  E+   L      L
Sbjct: 581 DISVPHLNDRPYEAARSAMKFLKMDRVDEAIEAVRERMYQASQQGADEEVQRLQQKMMSL 640

Query: 622 HEVHIQIHQIESQE 635
            E+   I + E  E
Sbjct: 641 QELRKGIKRGEFLE 654


>gi|167039956|ref|YP_001662941.1| DNA primase [Thermoanaerobacter sp. X514]
 gi|300915493|ref|ZP_07132805.1| DNA primase [Thermoanaerobacter sp. X561]
 gi|307724720|ref|YP_003904471.1| DNA primase [Thermoanaerobacter sp. X513]
 gi|166854196|gb|ABY92605.1| DNA primase [Thermoanaerobacter sp. X514]
 gi|300888445|gb|EFK83595.1| DNA primase [Thermoanaerobacter sp. X561]
 gi|307581781|gb|ADN55180.1| DNA primase [Thermoanaerobacter sp. X513]
          Length = 595

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 158/635 (24%), Positives = 291/635 (45%), Gaps = 43/635 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y ++ I+ ++    I ++I +YV+  +        ++   CPFH EKTPSF  +  K 
Sbjct: 1   MAYSKEMIEKVIEANDIIDVISEYVELKKAGK-----EFKGLCPFHREKTPSFMVSQEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDLI 118
            Y+CF C+  G+ ++F+  +   +F E+++ LA   G+ L        + ++ +   ++ 
Sbjct: 56  VYHCFGCNASGNVVTFIMDIENLTFKEAIEFLADRVGITLEETVLTEREYQRKKLIDEIY 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           ++ ++AT +F++ L +   ++   Y+ +RG+    I+ F +GY+      L   L++KG+
Sbjct: 116 KINKLATMYFYNKLFSEEGRQALTYIRKRGLTEATIKKFGIGYSSPHGNGLLNFLKEKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +E  +++AGLL     +   YDRFRNR++FPI   +G VI FGGR++      KYLN+PE
Sbjct: 176 TESFLVKAGLLSQ--KNNRYYDRFRNRVMFPIIDVKGNVIGFGGRSI-DDSLPKYLNTPE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F KGK L+    A                    I+VEGYMD +SL QAG+   V+SL
Sbjct: 233 TEVFKKGKTLFAINFAKK------------TQQDKFIIVEGYMDAISLHQAGIDCAVASL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE Q RL+ +    +V+ +D D+ G+ AA + +D+          +  + +  G+D
Sbjct: 281 GTALTEDQARLIKRYKGNVVIAYDADEAGISAALRGLDI---LDELNLNIKVLTIPYGKD 337

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AF +LI  +  L++   K   +N   + P +R      +   I  + D+
Sbjct: 338 PDEFIKKEGVNAFNQLIENADSLIEFKAKVFRKNLDLDNPQDRIIYVKKIAKDIAKLSDE 397

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y  +     Q       TE + +     +  +       + R    S  K     
Sbjct: 398 VKREVYISSAAKVAQIPENAVRTEVARFVNREIEKNQKNMYMAGNIRHNIYSSSKISP-- 455

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E  L+  L+    + +   + +     +N +L+ ++  + S   + K     +I 
Sbjct: 456 -----EKYLIALLLYDNNLYKRVKETITADMLENVKLKPIFGEIMSRLEDGKKTQINDIV 510

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L E         + +   ++            +V +     +        L+ ++E+I
Sbjct: 511 YLLQEENLISDFNDIIKAFYES-----------ENVTEQAVDDIINKILINSLAVKREKI 559

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++ I +    G+ EK   L+  L     ++ +I++
Sbjct: 560 KRAINEAHMLGDIEKERQLLIELQNCEKEMLKIKN 594


>gi|323359855|ref|YP_004226251.1| DNA primase [Microbacterium testaceum StLB037]
 gi|323276226|dbj|BAJ76371.1| DNA primase [Microbacterium testaceum StLB037]
          Length = 612

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 150/619 (24%), Positives = 262/619 (42%), Gaps = 39/619 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              +  I ++   + I++++G+ V           G     CPFHDE++PSFH     G+
Sbjct: 3   RIRQSDIDEVKARVNIADVVGERVALKSAG----VGSMKGLCPFHDERSPSFHVRPQVGY 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   GD  SFL A+   SF E+V+R+AA  G  L   D     +   ++ L    
Sbjct: 59  YHCFGCGESGDVYSFLRAMDHVSFTEAVERMAARVGYTLHYEDGGPAPETTGRSRLYAAN 118

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             A ++F   L          +L +RG D+ A   F +GYAP     L +HL  + F+ +
Sbjct: 119 AAAAEYFRAQLMTPEADTGRRFLGDRGFDAGAAAHFGVGYAPKGWSHLMDHLLAQKFTRD 178

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETI 240
           ++++AGL+  G      YDRFR RL++PIR   GQVI FG R L   +   KYLN+PET 
Sbjct: 179 ELLQAGLVSQGQR--GVYDRFRGRLVWPIRDVTGQVIGFGARKLYDDDQGPKYLNTPETP 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++ K + LY    A   + +S R          +++VEGY DV++   AG+   ++S GT
Sbjct: 237 IYKKAQVLYGLDLAKRDISRSHR----------VVVVEGYTDVMACHLAGITTAIASCGT 286

Query: 301 ALTEYQLRLLWKLS------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           A     + +L ++         +V  FD D  G +AA +A            +    +  
Sbjct: 287 AFGSDHITVLRRVMGDDSSSGEVVFTFDPDAAGQKAALRAFADEKRFAA---QTYVAVAP 343

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G DP       G  A   L+    P+ + +  +  ++    + + RA         +  
Sbjct: 344 EGLDPCDLRLQRGDGAVRALMDNKAPMFEFVIDQRLKDFDLGSVEGRAGALRAAAPIVAD 403

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK-NARHRDQKGPSQRLMQSSLVK 473
           I+D  LR  Y + +  RL     +  +      R   +   R   ++  +  +  S  + 
Sbjct: 404 IRDPALRPGYVRVLARRLGLDMPEVQSAVERAARGADRAEKRETAREADAAPVAVSVTMA 463

Query: 474 GKLSKKPSLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
              + +    E   ++  + +   ++ E +       + +  L+ + S L S  + Q  +
Sbjct: 464 SLPNTRDVALERGAMMAFLQYGHRIEPELFLRALQTPFGHPALEAVRSTLASTDLSQPGW 523

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               +          E  + L  ++  +   + T E  +V      ++ L      R L 
Sbjct: 524 AVAAV------EAVREPFRSLAAELLTSEFPARTEEGAVVAANDLSRRLLV-----RELE 572

Query: 593 RQKEEIEKQIAQVTAKGEA 611
           RQK E+ +++ +V A  + 
Sbjct: 573 RQKAELLREVQRVPADTDE 591


>gi|325576584|ref|ZP_08147302.1| DNA primase [Haemophilus parainfluenzae ATCC 33392]
 gi|325161147|gb|EGC73262.1| DNA primase [Haemophilus parainfluenzae ATCC 33392]
          Length = 628

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 179/637 (28%), Positives = 294/637 (46%), Gaps = 57/637 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  ++ K F
Sbjct: 38  SIPRQFIDDLLTKSNIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSEKKQF 92

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQT 115
           YYCF C  KG+ +SFL       F+E+V+ LAA AG+ +P      +         + + 
Sbjct: 93  YYCFGCGAKGNAISFLMDYDKLEFVEAVEELAASAGLEVPYEKRPNQFGNKPDVSYQTKR 152

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           +L  L++    F+   L    +     YL +RG+    IE F++GY P++  ++     +
Sbjct: 153 NLYDLMQEIASFYQAQL--PLNIPAQIYLQQRGLSPEIIERFQIGYVPNAMDTVLRQFGK 210

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
               ++K+ + G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLN
Sbjct: 211 NREEQKKLFDLGMLSRNDRG-NVYDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLN 268

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPETI +HKG  LY  + AL             +    +++VEGYMDV++L Q GV   V
Sbjct: 269 SPETITYHKGNELYGLYEALQI----------NDEPEKLLVVEGYMDVVALAQFGVDYAV 318

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +SLGT+ T  Q++LL++ + +++ C+DGD  G  AA++A++  L +L  G ++ F+ L  
Sbjct: 319 ASLGTSTTSEQIQLLFRSTEQVICCYDGDRAGRDAAWRALENSLPYLEDGRQIKFIFLPD 378

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPD++IR YGK  FE+ I ++  L + L+   +    F+T + R +L       I  I
Sbjct: 379 GEDPDTYIRQYGKEKFEEYIDQAQSLTEFLFAHLSPQVDFSTQEGRGKLVALAVPLIRQI 438

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               LR      +  +L    Q  +                  QK   +  M        
Sbjct: 439 PGDMLRLSLRNMLAQKLGIFDQSQLESLIPNQIDKAAPKPKTPQKTIKKTPM-------- 490

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                      ++  L+ +  ++      +      +    +L   L +   E++     
Sbjct: 491 ---------RVVISLLLQNSQLVNRISD-VGLQALKHEAGYELLEKLTALCREREGITTG 540

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +I +   +  F + L+ L              +  + D+      A +   R   +   +
Sbjct: 541 QILEYFRDTEFSKPLEILASW-----------DHLLDDLE--IINAFSQNYRRLNIQAIE 587

Query: 596 EEIEKQIAQVTAKGEAEKTAILI-SILHEVHIQIHQI 631
            +IE  IA+  A+G  ++   ++ ++L     Q  Q+
Sbjct: 588 RDIEMLIAKERAEGLTDQERAILVNLLKGKEEQKKQL 624


>gi|296166325|ref|ZP_06848762.1| DNA primase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898334|gb|EFG77903.1| DNA primase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 656

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 130/651 (19%), Positives = 243/651 (37%), Gaps = 40/651 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +   + I  ++G YV   R             CPFHDEK+PSFH   + G 
Sbjct: 20  RIPDRDIAAIRERVRIDEVVGDYVQLRRAGA----DSLKGLCPFHDEKSPSFHVRPNHGH 75

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD  +F+  +   +F+E+V+ LA   G  +    P    +     ++ L+ 
Sbjct: 76  FHCFGCGEGGDVYAFIQKIEHVTFVEAVELLADRIGHTISYTGPATSVQRDRGSRSRLVA 135

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A +F+  +L++        YL ER  D  A   F  G+AP    SL +HL +KGF 
Sbjct: 136 ANAAAAEFYAATLESDEAAPARQYLTERNFDGEAARRFGCGFAPSGWDSLTKHLVRKGFE 195

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            +++  AGL           DRF  RL++PIR++ G+VI FG R L   + +  KY+N+P
Sbjct: 196 FKELEAAGLSRQ--GRRGPIDRFHRRLLWPIRTAAGEVIGFGARRLFDDDPMEAKYINTP 253

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K   ++    A   + K              ++VEGY DV+++  +GV   V+S
Sbjct: 254 ETLLYKKSSVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLSGVTTAVAS 303

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDG----DDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            GTA  +  L +L +L               D        A+           +    + 
Sbjct: 304 CGTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDAAGRAAALKAFGGEQNLAGQSFVAVA 363

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  A   L+    PL +   +        ++ + R          + 
Sbjct: 364 PDGMDPCDLRLRSGDGALRDLVARRTPLFEFAIRTALAEMDLDSAEGRVAALRRCVPMVG 423

Query: 414 HIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM- 467
            IKD  LR  Y++ +   +      Q+  +  ++        +        +  +Q+   
Sbjct: 424 QIKDPTLRDEYARQLAGWVGWDDVAQVIDRVRSQAKQSPAPVRGGTAANAARRVAQQPRA 483

Query: 468 ----QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
               Q    +          +   L + + +PA+    +  L    + +     +   + 
Sbjct: 484 AVRSQPGATRPDPRDPTLWPQREALKSALQYPALAGPVFDTLTVESFTHPGYAAVRGAIE 543

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           +           +    + ++   +L   L  ++    +     +         Y   + 
Sbjct: 544 AAGGTSSGVTGAQWIDAVRQKAGSDLTAGLVSELGVEAVQVDDEKLP------RYIAGVL 597

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              +   + RQ  E++ ++ +++   + ++   L   L  +      +  Q
Sbjct: 598 ARLQEVWMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 648


>gi|330993915|ref|ZP_08317845.1| DNA primase [Gluconacetobacter sp. SXCC-1]
 gi|329758861|gb|EGG75375.1| DNA primase [Gluconacetobacter sp. SXCC-1]
          Length = 598

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 168/639 (26%), Positives = 272/639 (42%), Gaps = 57/639 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M     F+ +L    PI+ +IG+     R   N     +  CCPFH EKTPSF+  D   
Sbjct: 1   MALDPAFLDELRARTPIAPVIGRRTKLVRSGKN-----WKGCCPFHGEKTPSFYVYDDH- 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C   GD ++F+    G +FIE+V+ LA  AG+ +P  D     + +    L  +
Sbjct: 55  -YHCFGCQAHGDVITFVMESEGRTFIEAVEELATAAGMEVPKPDRAQRARAEEARTLGEV 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E     +   L     +    YL  RG+    I  F LG++ + R  L   + +   + 
Sbjct: 114 LEAVQASWQRRLYQPEGREGLAYLRGRGLTDETIAAFGLGWSGEGRGGLVAEMAEHDITP 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             ++EAG++   ++     + F NR+ FPIR  RG++++FGGR L      KYLN PET 
Sbjct: 174 AMLLEAGVMRADEDGTPRRELFYNRVTFPIRDRRGRLVSFGGRIL-GDGQPKYLNGPETP 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + L+    A   ++          + + +++VEGYMDV++L QAG    V+ LGT
Sbjct: 233 IFSKRRVLFGLDRAREGVR-------GTGAGAELLVVEGYMDVIALHQAGFHGAVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  QL  LW++ P  VLCFDGD  G RAA KA    L  L     + F +L  GEDPD
Sbjct: 286 ALTAEQLEALWQVGPAPVLCFDGDAAGQRAAVKAAQTALPLLNVERTLRFCVLPEGEDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S +R  G  A   L+  + P+  +L+   +E      P++RA L   L      I D+ L
Sbjct: 346 SLVRRDGSAAMAALVEGARPMGQVLFGLLSEGVRNPGPEQRAALRRRLVEVAALIPDKAL 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y   + D   + F++                  +    P+      ++V   L    
Sbjct: 406 AAEYRSTLLDSFFETFRR---------------GGGKGAARPAIATAPVAMVDADLQ--- 447

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP-EEIHQ 539
             R+  L   ++  P ++ E       +     ++  L   L   +  Q    P E++  
Sbjct: 448 --RQCILTAIILEQPVVMGEVQDAYCRLELP-ADIAALREELLDLYDAQGALPPAEDLAA 504

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L   G  ++ +++       G      +    D R+ +    AL    R          
Sbjct: 505 SLSATGLDDVCQRVRAVRGRRGRGRDEDDLFGTDPRREWWHFYALLNVGRF--------- 555

Query: 600 KQIAQVTAKGEAEKTAILISILHE-----VHIQIHQIES 633
                   +G+ E+       L E     +  ++  +++
Sbjct: 556 ----AAEIRGDTERMCA--GELDEAAWLSLRTRLLALDA 588


>gi|312871728|ref|ZP_07731816.1| DNA primase [Lactobacillus iners LEAF 3008A-a]
 gi|312875630|ref|ZP_07735631.1| DNA primase [Lactobacillus iners LEAF 2053A-b]
 gi|311088884|gb|EFQ47327.1| DNA primase [Lactobacillus iners LEAF 2053A-b]
 gi|311092670|gb|EFQ51026.1| DNA primase [Lactobacillus iners LEAF 3008A-a]
          Length = 600

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 162/631 (25%), Positives = 275/631 (43%), Gaps = 41/631 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I ++   + I ++I QYV   ++       DY   CPFH EKTPSF  ++SK F+
Sbjct: 5   IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+   FL      SF ESV  +A IA + +P            +  + ++  
Sbjct: 60  KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117

Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            AT+F+ H L   +  +    Y+ ER + S  I  FK+GYAP +   L   L+QK +S++
Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
            + ++GL I         DRFR+RL+FP+    G  IAF GR +S    + KY+NSPET 
Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K K LY+F  A + +          N  + +IL EGYMDV++  + G++  V+S+GT
Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NVENHLILYEGYMDVIAAYKCGIKTGVASMGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ +L +++P I++ +DGDDPG  A  +AI L      P   +  V L    DPD
Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNINLGIVSLPEHLDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++ YG   +   +  ++   + L +R ++  +     ++ +        I    D   
Sbjct: 344 EYVKKYGPEKYVNEVKAAITSTEFLLQRMSKKYNLFNDRDKLDFINESIALIAKNDDPIE 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477
              Y Q +  +LQ   +          R  +    + +      P+  +    L     S
Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPTDEVTPKQLDNVHSS 463

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 +  LL   I++         +     + N   Q+L +   S   +         
Sbjct: 464 SVSFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLANLWLSYLEKNPNPNISGF 521

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              + +      L+ +   +    +    +E  I D      Q  +L K+  +L  + + 
Sbjct: 522 ADFIPKS-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EMQR 568

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +  QI     K +++    L   + E+  +I
Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599


>gi|134093712|ref|YP_001098787.1| DNA primase [Herminiimonas arsenicoxydans]
 gi|133737615|emb|CAL60658.1| DNA primase [Herminiimonas arsenicoxydans]
          Length = 602

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 168/649 (25%), Positives = 279/649 (42%), Gaps = 66/649 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI+DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPQSFIQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTD--L 117
           +CF C   G  + FL    G  F+E+V+ LA   G+ +P  +   P  ++ E+      L
Sbjct: 57  HCFGCGAHGTAIGFLIEYSGMGFVEAVKDLAQNVGMLVPEAEDRLPPAQRAEQQAKSMAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              +  A DF+   L++A   +   YL  RG+       + +GYAPD    LR       
Sbjct: 117 SEAMNRACDFYRQQLRHAEGAKN--YLIGRGLTGEVAARYGMGYAPDGWDGLRAVFPDYE 174

Query: 178 FSEEKIIEAGLLI-----DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
                     +               YDRFR+R++FPIR+S+GQVI FGGR +      K
Sbjct: 175 LDALVECGLVIDKAEEEGADHRQRKRYDRFRDRIMFPIRNSKGQVIGFGGRVM-GDGEPK 233

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPET LF KG  LY  F A   ++           + + ++ EGYMDV++L Q G  
Sbjct: 234 YLNSPETPLFQKGSELYGLFEARQAIR----------EAGYALVTEGYMDVVALAQLGFP 283

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
             V++LGTA T   ++ L + + +++  FDGD  G RAA +A++  L +      + F+ 
Sbjct: 284 QAVATLGTACTSIHVQKLLRQTDQVIFSFDGDKAGRRAARRALEASLPYAGDNKVIKFLF 343

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L    DPDS+IR  G  +FEK + +++PL   L K    +    TP+ RA  +   K  +
Sbjct: 344 LPSEHDPDSYIRAMGAESFEKQVQDAMPLSQFLLKEAVGDNDLGTPEGRARTQFDAKPLL 403

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    LR    + +      + +    E        +  +R R      +R     L 
Sbjct: 404 QALPPSSLRLQIVRGLAQ----ITESTPAEIEALFELVQPISRVRAAPPKGKRTAPVGL- 458

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADI--RYDNNELQKLWSFLFSDFVEQK 530
                      E  ++  L+ HP +  E  Q   D+   +       L   +        
Sbjct: 459 -----------ERQIMRLLVEHPVLAAELDQAALDVAAHFAPERADMLVQLVTMSREMGV 507

Query: 531 YFLPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
           +     + + L   G  F  L+ ++           A +E+++   R     A+    + 
Sbjct: 508 HANFATLAELLRSSGSDFDTLVAEIA----------AESESDVDAARLELAGAIR-QTKM 556

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIESQEA 636
           ++L+ + E +      + +    E+       L     Q+  Q +++ A
Sbjct: 557 KMLATEMETL------IASGLSGEQAQARYRELTLQQEQLRRQAQAEMA 599


>gi|229520814|ref|ZP_04410236.1| DNA primase [Vibrio cholerae TM 11079-80]
 gi|229342047|gb|EEO07043.1| DNA primase [Vibrio cholerae TM 11079-80]
          Length = 605

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 162/632 (25%), Positives = 267/632 (42%), Gaps = 62/632 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 19  IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 73

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113
           +CF C   G+ + F+       F E+++ LA+  G+ +      P           K + 
Sbjct: 74  HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 133

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+   LK   +K    YL  RG+    ++ F +GY  D    +R + 
Sbjct: 134 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 193

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  SE+ ++ AG+LI+ DN    YDRFR R++FPIR  RG+VI FGGR + +G + KY
Sbjct: 194 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDLRGRVIGFGGRVIGEG-TPKY 251

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKG+ LY  +  L   +              I++VEGYMDV++L Q GV  
Sbjct: 252 LNSPETPIFHKGEKLYGLYEVLQAYR----------EPPQILVVEGYMDVVALAQYGVDY 301

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGT+ T   +R +++ +  ++ C+DGD  G  AA +A++  L  L     +  + L
Sbjct: 302 SVASLGTSTTTEHIRDIFRKTNTVICCYDGDRAGRAAARRALENALEFLNANKILKVLFL 361

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI-HLKNCI 412
             GEDPDSF+R YGK  FE+ I  S  LVD L     +                +    +
Sbjct: 362 PDGEDPDSFVRKYGKARFEEEIQNSQFLVDFLLSEIKKEAPDTDSKRWGTYVATNAAPLL 421

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           N   D  L+ Y  + +         +     +        +     +      +      
Sbjct: 422 NKTTDPSLKAYLWKELTLGTGWSDFQLQKFLNSLLTTNSNSQPAPHRAIKRTPM------ 475

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
                         ++  L+ +P+  +      +        L   +S +     +  + 
Sbjct: 476 ------------RDVIALLVQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPHI 522

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              ++ +   +     LL +L        +     E  +  + +   Q +          
Sbjct: 523 TTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV---------E 572

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           +Q E ++ +      +     +      L ++
Sbjct: 573 KQIENLQAK------ERSVGLSTEEKRELQDL 598


>gi|297160765|gb|ADI10477.1| DNA primase [Streptomyces bingchenggensis BCW-1]
          Length = 663

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 140/669 (20%), Positives = 257/669 (38%), Gaps = 76/669 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  + SKG 
Sbjct: 4   RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIR 119
           +YCF C   GD + F+  +   SF E+++RLA+ AG+ L          +++  +T L+ 
Sbjct: 60  FYCFGCQEGGDTVDFIMKIDHLSFAETIERLASQAGITLRYEQGSATPGRQQGERTRLVE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             + A  F+   L +   +    +L ERG D  A + F +GY+P     L   LR +GF+
Sbjct: 120 AHKAAAQFYVEQLDSPEAEIGRRFLAERGFDQAAAQHFGVGYSPAGWDHLVRFLRGRGFT 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           ++++I +GL  +        DRFR RL++PIR   G+V+ FG R L   ++  KYLN+PE
Sbjct: 180 DKELILSGLAQES--RRNPIDRFRGRLMWPIRDITGEVVGFGARKLRDDDNGPKYLNTPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K   LY    A   + K+ R           ++VEGY DV++   AGV   +++ 
Sbjct: 238 TPLYKKSHVLYGIDLAKKEIAKTSRA----------VVVEGYTDVMACHLAGVTTAIATC 287

Query: 299 GTALTEYQLRLLW-----KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           GTA     +++L        S  +V  FDGD  G +AA +A +               + 
Sbjct: 288 GTAFGGDHIKILRRLLMDNSSAEVVFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAVT 344

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  A ++L+     L +   +      + +T   RA         + 
Sbjct: 345 PGGMDPCELRLAEGDGAVKELVDSRTQLFEFAIRHILARHNLDTAVGRAAALEEAAPVVA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-- 471
            IK++ +++  +  +   L  L  +++         W +    R          +     
Sbjct: 405 GIKNRSIQHESAVHLAGLLGILDTQFVVRRVAQLAQWARERGQRGGGPQQGGARRGGGPG 464

Query: 472 ---------------------------------------VKGKLSKKPSLREAALLLTLI 492
                                                      L       E  LL   +
Sbjct: 465 GGYGGPGQGSGPGQGSGPGAGRAAGPGGGPDGAPQPPRGPALNLRSPAHRVERELLKLAL 524

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
             P ++   +       +       +   +             +   R+ +    + ++ 
Sbjct: 525 QRPELVSPAFDAYGIDEFTAPPYAAVRRAIEDAG--GASAADGDYLARVRDIAPDDTVRA 582

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           +  ++      +        D  + Y     +  R   ++++  E+   + ++ +  + +
Sbjct: 583 MVHEL------AVEPPHTRRDPDEAYAGVQLVAVRLAAVNQRIGEVRGALQRLGSGADPD 636

Query: 613 KTAILISIL 621
             A + + L
Sbjct: 637 HLAAVQNEL 645


>gi|212633972|ref|YP_002310497.1| DNA primase [Shewanella piezotolerans WP3]
 gi|212555456|gb|ACJ27910.1| DNA primase [Shewanella piezotolerans WP3]
          Length = 576

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 173/601 (28%), Positives = 292/601 (48%), Gaps = 53/601 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+    I +LI   V   +   N       ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELVARTDIVDLIDPKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIR 119
           FY+CF C   G+ + F+       F+++++ LA   G+ +P      + +++    DL +
Sbjct: 56  FYHCFGCGAHGNVIDFVMEYDRLDFVDAIEELAGQLGLEVPQEQGTGKPRDQELSRDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E ++ FF   L+   DK+    YL  RG+    +E F +G+APD    L    RQ   
Sbjct: 116 LMEESSLFFQSQLRQHPDKQKVLDYLSHRGLSKDVVEHFNIGFAPDGWDGLLSRYRQNQD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S+ K++ AG++I+ D+    YDRFR+RL+FPIR  RG+VI FGGR L +G + KYLNSPE
Sbjct: 176 SQNKLLTAGMVIENDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVLGEG-TPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +              +++VEGYMDV++L Q GV   V+SL
Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------QQVLIVEGYMDVVALGQFGVDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  ++ C+DGD  G  AA++A++  L  L PGN+V F+ L  GED
Sbjct: 284 GTSTTADQFQLLLRSAKEVICCYDGDKAGKEAAWRALETALPLLKPGNQVRFMFLPEGED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD+ +R  GK  FE+ I +++ L + L++   +       ++++ L  +    I  ++D 
Sbjct: 344 PDTLVRQIGKEQFEQNIGQAMALPEFLFENLAKKF---GKEDKSVLAKNAIKLIEKVQDT 400

Query: 419 KLRYYYSQAIRDRLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L+    + +  +L+     +   + +   +   K  +H+  KG    L           
Sbjct: 401 VLQSLLLEDLAHKLRMNGADELKRKFNFSTKTADKPKQHKALKGRGTPL----------- 449

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                     +  L+ HP + ++  ++LA        +  L   L  D    K     ++
Sbjct: 450 -------RLAIALLVQHPRLGEKLPEQLALKHVQMPGIDLLALVL--DLTRGKVMSSAQL 500

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            ++         LK+L +            +    ++ +  +  L ++   + L ++ +E
Sbjct: 501 LEQFRGDNQFSTLKKLTQW---------DHQVADENLLKELKGTL-VWLNNQYLEQRYQE 550

Query: 598 I 598
           +
Sbjct: 551 L 551


>gi|229820280|ref|YP_002881806.1| DNA primase [Beutenbergia cavernae DSM 12333]
 gi|229566193|gb|ACQ80044.1| DNA primase [Beutenbergia cavernae DSM 12333]
          Length = 667

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 148/683 (21%), Positives = 260/683 (38%), Gaps = 76/683 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              R+ I  +     I  ++G +V           G     CPFHDE+TPSFH     G 
Sbjct: 4   RIRREDIGAVREKARIEEIVGDHVSLRSAG----VGSMKGLCPFHDERTPSFHVRPQLGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-----PKIEKKEKIQTD 116
           ++CF C   GD +SF+  +   +F E+++RLAA  GV L   D      +  ++   +  
Sbjct: 60  WHCFGCDEGGDVISFVQKIDHLTFTEAIERLAARTGVVLRYEDDGGGTSRPREEPGRRQR 119

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L+    +A++++   L     +    +L ERG D  A + F +GYAP     L  HLR +
Sbjct: 120 LVEAHRIASEYYAEQLAAPEAEPARTFLAERGFDRAAAQTFGVGYAPKGWDHLLRHLRGR 179

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLN 235
           GF+E ++  +GL+  G+     YDRFR RL++PIR   G VI FG R L   +   KYLN
Sbjct: 180 GFTEAELAASGLVSQGNR--GHYDRFRGRLMWPIRDITGDVIGFGARHLYADDPGPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +PET ++ K + LY    A   + K             +++VEGY DV++   AG+   +
Sbjct: 238 TPETPIYRKSQVLYGIDVAKREIAK----------ERQVVVVEGYTDVMAAHLAGIGTAI 287

Query: 296 SSLGTALTEYQLRLLWK-------------------LSPRIVLCFDGDDPGLRAAYKAID 336
           ++ GTA     +R++ +                   +   ++  FDGD+ G +AA +A  
Sbjct: 288 ATCGTAFGADHVRIVRRLLGDAADSSAGVMLASGRAVGGEVIFTFDGDEAGQKAALRAFG 347

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
                    ++    +   G DP       G  A   L+ E  PL +   +        +
Sbjct: 348 EDQQFA---SQTFVAVSPDGLDPCDLRLQRGDAAVRALVSEREPLFEFAIRSVLARVDLD 404

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
           TP+ R          +  I+D  LR  Y++ +   L           +   R   +    
Sbjct: 405 TPEGRVAGLRVAAPVVARIRDHALRGEYARELAGWLGMDVVDVRRAVASAPRGDARPRGD 464

Query: 457 RDQKGPSQ--------------RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ- 501
                                 R  Q    +       +  E  +L   +  PA   +  
Sbjct: 465 ARSADGRPDGGRGETRAGDDSGRSAQRRPAQPYPDDPVAKLERQVLEVALQLPAFAADAG 524

Query: 502 YQELADIRYDNNELQKLWSFL--------FSDFVEQK-----YFLPEEIHQRLCERGFGE 548
           +  L    +     + +   +        F  F EQ+       +         +     
Sbjct: 525 FDSLDAAAFQVPAYRAVHDAVRAAGGAAAFETFREQQRAAGAADVDRAAAAAWSDAVLEG 584

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            +  L   V +  +      A+  +   GY + +        ++R+  +I  ++ ++ A 
Sbjct: 585 AVGPLASLVTELAVAPLP--ADREEALGGYARGVVRAVVRLGVTRKIGDIRGRLQRMDAA 642

Query: 609 GEAEKTAILISILHEVHIQIHQI 631
             +E+     + L  +  +   +
Sbjct: 643 --SEEYQAAFAELLVLEQERRGL 663


>gi|325690017|gb|EGD32021.1| DNA primase [Streptococcus sanguinis SK115]
          Length = 602

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 145/634 (22%), Positives = 266/634 (41%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL V        ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAVNDRPRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL  RG+    ++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYRRGLTDDVLKHFQIGLAPNEGNYLHKSMVGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQSAASDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRGTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDKAGQAATAKALDEL-----RDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  +++ R ++      + +        
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSNRSQEVPTQQSQPVVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +I+HP ++  QY+   D  +D+ ELQ L+  L ++  E       
Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQALYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|157960787|ref|YP_001500821.1| DNA primase [Shewanella pealeana ATCC 700345]
 gi|157845787|gb|ABV86286.1| DNA primase [Shewanella pealeana ATCC 700345]
          Length = 576

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 171/630 (27%), Positives = 299/630 (47%), Gaps = 58/630 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+    I +LI   V   +   N       ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELVARTDIVDLIDPKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIR 119
           FY+CF C   G+ + F+       F+++++ LA   G+ +P      + +++    DL +
Sbjct: 56  FYHCFGCGAHGNVIDFVMEYDRLDFVDAIEELAGQLGLEVPREQGTGKPRDQELSRDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A++FF + L+   DK+    YLD RG+    +E F +G+APD    L    RQ   
Sbjct: 116 LMEEASNFFQNQLRQNTDKQKVLDYLDHRGLTKEVVEHFNIGFAPDGWDGLLSRYRQNQD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S++K++ AG++I+ D+    YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 176 SQDKLLTAGMVIENDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +   R          +++VEGYMDV++L Q  V   V+SL
Sbjct: 234 TPIFHKGNELYGLYELKQRHRDPQR----------VLIVEGYMDVVALAQFDVDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  ++ C+DGD  G  AA++A++  L  L PGN+V F+ L  GED
Sbjct: 284 GTSTTADQFQLLLRSAKEVICCYDGDKAGKEAAWRALETALPLLKPGNQVRFMFLPEGED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD+ +R  GK  FE  I +++ L + L++   +       ++++ L  +    I  ++D 
Sbjct: 344 PDTLVRQIGKEQFEAQIDQAMALPEFLFENLAKTY---ANEDKSVLAKNAIKLIEKVQDT 400

Query: 419 KLRYYYSQAIRDRLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L+    + +  +L+     +   + +   +  +K ++H+  KG    L           
Sbjct: 401 VLQSLLLEDLAHKLRMNGADELKRKFNFSAKAAEKPSQHKALKGRGTPL----------- 449

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                     +  L+ HP + ++  ++          L+ +                 ++
Sbjct: 450 -------RLAIALLVQHPRLGEKLPEQ--------PALKHIQMAGIDLLTLVLDLTRGQV 494

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +      E  +  ++      L     +    ++ Q  ++ L ++   + L ++ +E
Sbjct: 495 ---ISSAQLLEQFRGDNQFSTLKKLTQWDHQVADENLLQKLKETL-VWLNNQYLEQRYQE 550

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +      +      E+   L  ++  +  +
Sbjct: 551 L-----SMKQNLTKEERLQLSKLISVIKNK 575


>gi|309803288|ref|ZP_07697385.1| DNA primase [Lactobacillus iners LactinV 11V1-d]
 gi|308164796|gb|EFO67046.1| DNA primase [Lactobacillus iners LactinV 11V1-d]
          Length = 600

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 162/631 (25%), Positives = 275/631 (43%), Gaps = 41/631 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I ++   + I ++I QYV   ++       DY   CPFH EKTPSF  ++SK F+
Sbjct: 5   IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+   FL      SF ESV  +A IA + +P            +  + ++  
Sbjct: 60  KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAI--SKKNPIKQIYS 117

Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            AT+F+ H L   +  +    Y+ ER + S  I  FK+GYAP +   L   L+QK +S++
Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
            + ++GL I         DRFR+RL+FP+    G  IAF GR +S    + KY+NSPET 
Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K K LY+F  A + +          N  + +IL EGYMDV++  + G++  V+S+GT
Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NVENHLILYEGYMDVIAAYKCGIKTGVASMGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ +L +++P I++ +DGDDPG  A  +AI L      P   +  V L    DPD
Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNINLGIVSLPEHLDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++ YG   +   +  ++   + L +R ++  +     ++ +        I    D   
Sbjct: 344 EYVKKYGPEKYVNEVKAAITSTEFLLQRMSKKYNLFNDRDKLDFINESIALIAKNDDPIE 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477
              Y Q +  +LQ   +          R  +    + +      P+  +    L     S
Sbjct: 404 IDIYIQKLAQKLQVSVELLKARLLREQRKIRTAINHQKQIQALYPTDEVTPKQLDNVHSS 463

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 +  LL   I++         +     + N   Q+L +   S   +         
Sbjct: 464 SVSFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLANLWLSYLEKNPNPNISGF 521

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              + +      L+ +   +    +    +E  I D      Q  +L K+  +L  + + 
Sbjct: 522 ADFIPKD-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EMQR 568

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +  QI     K +++    L   + E+  +I
Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599


>gi|327473234|gb|EGF18654.1| DNA primase [Streptococcus sanguinis SK408]
          Length = 602

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 144/634 (22%), Positives = 267/634 (42%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL V        ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    ++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAVATDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +++L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHVQHLSKYCKKVILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      +          
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPIQQSQPAVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +I+HP ++  QY+   D  +D+ ELQ L+  L ++  E       
Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|49486398|ref|YP_043619.1| DNA primase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|78099124|sp|Q6G904|PRIM_STAAS RecName: Full=DNA primase
 gi|49244841|emb|CAG43301.1| DNA primase [Staphylococcus aureus subsp. aureus MSSA476]
          Length = 605

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 149/636 (23%), Positives = 263/636 (41%), Gaps = 40/636 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDL 117
             +CF C   G+   F   +   SF+E+V+ L     V + +   +     +       +
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQFNSNIQIASDDLQM 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + E+  +F++++L K    ++   YL ERG     I+   +G+APDS +   + L+++
Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKR 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G+  E   EAGLL   + + + YDRFRNR++FP+++++G+++ + GRT   G+  KYLNS
Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F K K LYN   A   ++K             I+L+EG+MDV+    AG++NVV+
Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           ++GT L++  +  + KL+  I L FDGD  G  A  K        L  G  V  + L  G
Sbjct: 285 TMGTQLSDEHITFIRKLTLNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +I  YG  AF   +               ++   +           L + I+ +K
Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----WKKNARHRDQKGPSQRLMQSSLV 472
              L+      +        ++   E                   D+ G         + 
Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQFNQAPANYYPDDEYGGYDEYGGYIEPEPIGMA 461

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           +     +    E A L  L+         Y+ +    + N   + ++  L   + E   +
Sbjct: 462 QFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQY 521

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +  Q +      E L  L++            +    +    Y   +    +     
Sbjct: 522 NISDAVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET--- 570

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
              E +  ++ + T  G+ E     +  +   + + 
Sbjct: 571 --IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 604


>gi|309810232|ref|ZP_07704077.1| DNA primase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169504|gb|EFO71552.1| DNA primase [Lactobacillus iners SPIN 2503V10-D]
          Length = 600

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 162/631 (25%), Positives = 273/631 (43%), Gaps = 41/631 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I ++   + I ++I QYV   ++       DY   CPFH EKTPSF  ++SK F+
Sbjct: 5   IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+   FL      SF ESV  +A IA + +P            +  + ++  
Sbjct: 60  KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117

Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            AT+F+ H L   +  +    Y+ ER + S  I  FK+GYAP +   L   L+QK +S++
Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
            + ++GL I         DRFR+RL+FP+    G  IAF GR +S    + KY+NSPET 
Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K K LY+F  A + +          N  + +IL EGYMDV++  + G++  V+S+GT
Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NVENHLILYEGYMDVIAAYKCGIKTGVASMGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ +L +++P I++ +DGDDPG  A  +AI L      P   +  V L    DPD
Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNINLGIVSLPENLDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++ YG   +   +  ++   + L +R  +  +     ++ +        I    D   
Sbjct: 344 EYVKKYGPEKYVNEVKAAITSTEFLLQRMAKKYNLFNDRDKLDFINESIALIAKNDDPIE 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477
              Y Q +  +LQ   +          R  +    + +      P+  +    L     S
Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPADEVTPKQLDNVHDS 463

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 +  LL   I++         +     + N   Q+L     S   +         
Sbjct: 464 SASFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLADLWLSYLEKNPNPNISGF 521

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              + +      L+ +   +    +    +E  I D      Q  +L K+  +L  + + 
Sbjct: 522 ADFIPKD-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EIQR 568

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +  QI     K +++    L   + E+  +I
Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599


>gi|170699446|ref|ZP_02890490.1| DNA primase [Burkholderia ambifaria IOP40-10]
 gi|170135646|gb|EDT03930.1| DNA primase [Burkholderia ambifaria IOP40-10]
          Length = 622

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 174/654 (26%), Positives = 278/654 (42%), Gaps = 63/654 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111
           +CF C   G  + FL    G +F E+VQ LA   G+ +P             D      +
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGDYPAPVSK 116

Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS--- 168
            + T L  ++ VA D++   L+         YL  RG+       F LGYAPD   +   
Sbjct: 117 SVATALSDVMSVACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLET 174

Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
                R +   E  ++      D    A  YDRFR R++FPIR+ +GQVI FGGR L  G
Sbjct: 175 AFPDYRDESLVESGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLGSG 234

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
           E  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L Q
Sbjct: 235 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALAQ 283

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
            G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A++  L H      +
Sbjct: 284 LGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTI 343

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
            F+ L    DPDS++R +G  AF + +  ++PL   L       ++ + P+ RA+     
Sbjct: 344 RFLFLPSEHDPDSYVREFGADAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDA 403

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           K  +  +    LR        DRL   F++         R      +             
Sbjct: 404 KPLLQALPANALRAQIMHMFADRLDIPFEEVAALSDVDARIAAPARQ------------- 450

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                    ++ +  E   L TL+ HP I  +   E          + +L++ +      
Sbjct: 451 --APPRSERRRVTDSEKRALRTLVMHPRIASQLDDEQLATLRALPRIGELFAEVVEHARA 508

Query: 529 QKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ- 579
                    L + +        + E+ +++   D  VRD  L +   E      R+  + 
Sbjct: 509 LGDGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQERI 568

Query: 580 -----QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                QA  L  R+     + + + +Q        E  +   L     ++  ++
Sbjct: 569 AGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 620


>gi|325912169|ref|ZP_08174567.1| DNA primase [Lactobacillus iners UPII 143-D]
 gi|325476119|gb|EGC79287.1| DNA primase [Lactobacillus iners UPII 143-D]
          Length = 600

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 162/631 (25%), Positives = 275/631 (43%), Gaps = 41/631 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I ++   + I ++I QYV   ++       DY   CPFH EKTPSF  ++SK F+
Sbjct: 5   IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+   FL      SF ESV  +A IA + +P            +  + ++  
Sbjct: 60  KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117

Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            AT+F+ H L   +  +    Y+ ER + S  I  FK+GYAP +   L   L+QK +S++
Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
            + ++GL I         DRFR+RL+FP+    G  IAF GR +S    + KY+NSPET 
Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K K LY+F  A + +          N  + +IL EGYMDV++  + G++  V+S+GT
Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NVENHLILYEGYMDVIAAYKCGIKTGVASMGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ +L +++P I++ +DGDDPG  A  +AI L      P   +  V L    DPD
Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNINLGIVSLPEHLDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++ YG   +   +  ++   + L +R ++  +     ++ +        I    D   
Sbjct: 344 EYVKKYGPEKYVNEVKAAITSTEFLLQRMSKKYNLFNDRDKLDFINESIALIAKNDDPIE 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477
              Y Q +  +LQ   +          R  +    + +      P+  +    L     S
Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPTDEVTPKQLDNVHSS 463

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 +  LL   I++         +     + N   Q+L +   S   +         
Sbjct: 464 SVSFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLANLWLSYLEKNPNPNISGF 521

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              + +      L+ +   +    +    +E  I D      Q  +L K+  +L  + + 
Sbjct: 522 ADFIPKS-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EMQR 568

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +  QI     K +++    L   + E+  +I
Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599


>gi|152999722|ref|YP_001365403.1| DNA primase [Shewanella baltica OS185]
 gi|151364340|gb|ABS07340.1| DNA primase [Shewanella baltica OS185]
          Length = 574

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 180/620 (29%), Positives = 296/620 (47%), Gaps = 55/620 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+    I  LI + V   +   N     Y ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   G+ + F+       FI++++ LA   G+ +P      ++ +  +  DL +
Sbjct: 56  FYHCFGCGAHGNAIDFVMEYDRLDFIDAIEDLAGQLGLEVPREQGTGKRHDDGLSRDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A+ +F + L+  +DK+    YL  RG+    +E F +G+APD    L    RQ   
Sbjct: 116 LMEEASLYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +++K++ AG+LI  D+    YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 176 AQDKLLTAGMLISNDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +              +++VEGYMDV++L Q GV   V+SL
Sbjct: 234 TPIFHKGNELYGLYELKQRYRDP----------DKVLIVEGYMDVVALAQFGVDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  +V C+DGD  G  AA++A++  L  L PG++V F+ L + ED
Sbjct: 284 GTSTTAEQFQLLLRSAKEVVCCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK +FE L+V ++ L + L+             ++  L       I  I+D 
Sbjct: 344 PDSMVRKIGKDSFETLMVSAIALPEFLFDTLATKY----GTDKGNLAKQAFILIEKIQDT 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L+    + +  +L     + + +  G+     K   ++  KG    L            
Sbjct: 400 VLQNLLLENLAHKLGMNSSEDMKKKLGFSVKQAKPMANKGLKGRGTPL------------ 447

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                    +  L+ HP +      + A        ++ L   L     EQ      ++ 
Sbjct: 448 ------RLAIALLVQHPKLGMGLPPQPALAHLQMPGIE-LLPLLLEMTREQ-TLNSAQLL 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++  E  +   L +L +            +    ++ + ++Q L ++   + + ++ +E+
Sbjct: 500 EQFREHPYSGTLHKLAQW---------DHQVADENLLEKFKQTL-VWLNNQYIEQRYQEL 549

Query: 599 EKQIAQVTAKGEAEKTAILI 618
              + Q   K E  + + LI
Sbjct: 550 --SLKQTHTKEEKMQLSKLI 567


>gi|315653574|ref|ZP_07906494.1| DNA primase [Lactobacillus iners ATCC 55195]
 gi|315488936|gb|EFU78578.1| DNA primase [Lactobacillus iners ATCC 55195]
          Length = 600

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 162/631 (25%), Positives = 276/631 (43%), Gaps = 41/631 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I ++   + I ++I QYV   ++       DY   CPFH EKTPSF  ++SK F+
Sbjct: 5   IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+   FL      SF ESV  +A IA + +P            +  + ++  
Sbjct: 60  KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117

Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            AT+F+ H L   +  +    Y+ ER + S  I  FK+GYAP +   L   L+QK +S++
Sbjct: 118 DATEFYQHILLTTKLGEFALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
            + ++GL I         DRFR+RL+FP+    G  IAF GR +S    + KY+NSPET 
Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K K LY+F  A + +          N+ + +IL EGYMDV++  + G++  V+S+GT
Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NAENHLILYEGYMDVIAAYKCGIKTGVASMGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ +L +++P I++ +DGDDPG  A  +AI L      P   +  V L    DPD
Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNINLGIVSLPEHLDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++ YG   +   +  ++   + L +R ++  +     ++ +        I    D   
Sbjct: 344 EYVKKYGPEKYVNEVKAAITSTEFLLQRMSKKYNLFNDRDKLDFINESIALIAKNDDPIE 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477
              Y Q +  +LQ   +          R  +    + +      P+  +    L     S
Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPTDEVTPKQLDNVHSS 463

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 +  LL   I++         +     + N   Q+L +   S   +         
Sbjct: 464 SVSFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLANLWLSYLEKNPNPNISGF 521

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              + +      L+ +   +    +    +E  I D      Q  +L K+  +L  + + 
Sbjct: 522 ADFIPKD-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EIQR 568

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +  QI     K +++    L   + E+  +I
Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599


>gi|221197052|ref|ZP_03570099.1| DNA primase [Burkholderia multivorans CGD2M]
 gi|221203724|ref|ZP_03576742.1| DNA primase [Burkholderia multivorans CGD2]
 gi|221175890|gb|EEE08319.1| DNA primase [Burkholderia multivorans CGD2]
 gi|221183606|gb|EEE16006.1| DNA primase [Burkholderia multivorans CGD2M]
          Length = 621

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 176/658 (26%), Positives = 279/658 (42%), Gaps = 69/658 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV----------DPKIEKKEK 112
           +CF C   G  + FL    G +F E+VQ LA   G+ +P            D      + 
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSTRGGGGGSDYPAPVSKS 116

Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---SL 169
           + T L  ++  A D++   L+         YL  RG+       F LGYAPD      + 
Sbjct: 117 VATALSDVMATACDYYRKQLRG--APAAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEAA 174

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
               R     E  ++      D   +A  YDRFR R++FPIR+ +GQVI FGGR L  GE
Sbjct: 175 FPDYRDDALVESGLVIVSEKTDAQGAARRYDRFRERIMFPIRNVKGQVIGFGGRVLGSGE 234

Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289
             KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L Q 
Sbjct: 235 P-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALAQL 283

Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
           G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A++  L H      + 
Sbjct: 284 GFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTIR 343

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           F+ L    DPDS++R +G  AF   +  ++PL   L       ++ + P+ RA+     K
Sbjct: 344 FLFLPPEHDPDSYVREFGADAFSDQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAK 403

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             +  +    LR      I DRL   F++         R                     
Sbjct: 404 PLLQALPANALRAQIMHMIADRLDIPFEEVAALSEVDARIA---------------AAPR 448

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                   ++ +  E   L TL+ HP I      E          + +L++ +       
Sbjct: 449 QAPARSDRRRVTESEKRALRTLVMHPRIALALDDEQVSTLRALPRIGELFAEVVDHARAL 508

Query: 530 KYFLPEEIHQRL-----CERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ-- 579
                  +   +         + E+ +++   D  VRD  L +   EA     R+  +  
Sbjct: 509 GDGAEFRLLSDVLRTSPNSATYEEIFREILDYDENVRDLLLQNPDDEAVAERQREQERIA 568

Query: 580 ----QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
               QA  L  R+     + + + +Q         +  T   ++ L E++ Q   ++ 
Sbjct: 569 GEELQAAVLKMRYDACCDRLDRLARQ---------STFTPEELAELTELNRQRTDMKR 617


>gi|254248773|ref|ZP_04942093.1| DNA primase [Burkholderia cenocepacia PC184]
 gi|124875274|gb|EAY65264.1| DNA primase [Burkholderia cenocepacia PC184]
          Length = 637

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 174/655 (26%), Positives = 277/655 (42%), Gaps = 64/655 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 16  IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 70

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------------DPKIEKK 110
           +CF C   G  + FL    G +F E+VQ LA   G+ +P              D      
Sbjct: 71  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGGDYPAPVS 130

Query: 111 EKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY--- 167
           + + T L   +  A D++   L+         YL  RG+       F LGYAPD      
Sbjct: 131 KSVATALSDAMTAACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLE 188

Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
           +     R +   E  ++      D    A  YDRFR R++FPIR+ +GQVI FGGR L  
Sbjct: 189 AAFPDYRDESLVEAGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLGS 248

Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
           GE  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L 
Sbjct: 249 GEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALA 297

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           Q G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A++  L H      
Sbjct: 298 QLGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAGDNRT 357

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
           + F+ L    DPDS++R +G  AF + +  ++PL   L       ++ + P+ RA+    
Sbjct: 358 IRFLFLPTEHDPDSYVREFGADAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFD 417

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
            K  +  +    LR        DRL   F++  T      R      +            
Sbjct: 418 AKPLLQALPANALRAQIMHMFADRLDIPFEEVATLSDVDTRIAMPPRQ------------ 465

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
                     ++ +  E   L TL+ HP I  +   E          + +L++ +     
Sbjct: 466 ---APARSERRRVTDSEKRALRTLVMHPRIASQLDDEQIATLRALPRIGELFAEVVDHAR 522

Query: 528 EQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ 579
                     L + +        + E+ +++   D  VRD  L +   E      R+  +
Sbjct: 523 ALGDGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQER 582

Query: 580 ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                 QA  L  R+     + + + +Q        E  +   L     ++  ++
Sbjct: 583 IAGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 635


>gi|332361595|gb|EGJ39399.1| DNA primase [Streptococcus sanguinis SK1056]
          Length = 602

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 146/634 (23%), Positives = 268/634 (42%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     Y   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL V        ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    ++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQEAASDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      + +        
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPTHQSQPVVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +I+HP ++  QY+   D  +D+ ELQ L+  L ++  E       
Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|313764536|gb|EFS35900.1| DNA primase [Propionibacterium acnes HL013PA1]
 gi|313816078|gb|EFS53792.1| DNA primase [Propionibacterium acnes HL059PA1]
 gi|314915532|gb|EFS79363.1| DNA primase [Propionibacterium acnes HL005PA4]
 gi|314920000|gb|EFS83831.1| DNA primase [Propionibacterium acnes HL050PA3]
 gi|314932013|gb|EFS95844.1| DNA primase [Propionibacterium acnes HL067PA1]
 gi|314955883|gb|EFT00283.1| DNA primase [Propionibacterium acnes HL027PA1]
 gi|314958196|gb|EFT02299.1| DNA primase [Propionibacterium acnes HL002PA1]
 gi|315098454|gb|EFT70430.1| DNA primase [Propionibacterium acnes HL059PA2]
 gi|315101188|gb|EFT73164.1| DNA primase [Propionibacterium acnes HL046PA1]
 gi|327450863|gb|EGE97517.1| DNA primase [Propionibacterium acnes HL087PA3]
 gi|327453789|gb|EGF00444.1| DNA primase [Propionibacterium acnes HL083PA2]
 gi|328754282|gb|EGF67898.1| DNA primase [Propionibacterium acnes HL087PA1]
 gi|328754465|gb|EGF68081.1| DNA primase [Propionibacterium acnes HL025PA2]
          Length = 623

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 144/654 (22%), Positives = 260/654 (39%), Gaps = 51/654 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I  ++G+YV                 CPFHDEKTPSF    S+G 
Sbjct: 10  RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120
           +YCF C   GD +SF+  +   +F+E+VQRLA   GV L ++D      E  ++  ++  
Sbjct: 66  FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A +FF   +     +    ++  RG    A   F +GYAP   + LR+HL  KGF+ 
Sbjct: 126 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           + +IE+GL+          D F+ R+++PI+ S   V+ FG R +   +    KY+N+PE
Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K   LY    A   + K           S  ++VEGY DV++   +G+   V++ 
Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290

Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  +   RL+ +L          ++  FDGD  G +AA K            ++    
Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP   +   G  A  +L+   +PL   + +        +  D R          
Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVSQFDLDRADGRVAAIRAAAPL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  I+DQ L   Y + +   +         E S   R  +   +      P  +   S +
Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSHTRRQHRSEPQLTIVPPPEPQ-QGSGI 466

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                +      E   L   + HP +  E++ ++      +   Q ++  + +       
Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              +   +++ E      +KQL+  +    +     +       + Y +A A   R   +
Sbjct: 522 RGQDRWTEKVSEATPDPQVKQLEVALLVESVLREEPD-------RDYAEAYAARVRLLSI 574

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +     ++ ++ +     + +    + S L  +   + +     ++I   G  S
Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA-LRK-----SLIVAGGAAS 622


>gi|152979908|ref|YP_001352182.1| DNA primase [Janthinobacterium sp. Marseille]
 gi|151279985|gb|ABR88395.1| DNA primase [Janthinobacterium sp. Marseille]
          Length = 599

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 171/631 (27%), Positives = 276/631 (43%), Gaps = 51/631 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI+DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPQSFIQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTD--L 117
           +CF C   G  + FL    G  F+E+V+ LA   G+ +P  +   P  ++ E       L
Sbjct: 57  HCFGCGAHGTAIGFLIEYSGMGFVEAVKDLAQNVGMIVPEAEDRLPPAQRAEHQAKSMAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              +  A D++   L+    +R   YL  RG+       + +GYAPD    LR       
Sbjct: 117 SEAMTQACDYYRQQLR--HAERAKNYLIGRGLTGEIAARYGMGYAPDGWDGLRSVFPDYE 174

Query: 178 FSEEKIIEAGLLI--DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
                     +    +   +   YDRFR+R++FPIR+++GQVI FGGR L  GE  KYLN
Sbjct: 175 VEALVESGLVIDKAEEEGANRKRYDRFRDRIMFPIRNTKGQVIGFGGRVLDNGEP-KYLN 233

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LF KG  LY  F A   ++           + + ++ EGYMDV++L Q G    V
Sbjct: 234 SPETPLFQKGSELYGLFEARQAIR----------EAGYALVTEGYMDVVALAQLGFPQAV 283

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T   ++ L + + +++  FDGD  G RAA +A++  L H      + F+ L  
Sbjct: 284 ATLGTACTPIHVQKLLRQTDQVIFSFDGDKAGRRAARRALEASLPHAGDNKVIKFLFLPS 343

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPDS+IR  G  AFEK + +++PL   L K    +    TP+ RA  +   K  +  +
Sbjct: 344 EHDPDSYIRELGTEAFEKQVQDAMPLSQFLLKEAVGDNDLGTPEGRARAQFDAKPLLQAL 403

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               LR    +++      + +    E        +  +R R     ++R          
Sbjct: 404 PPSSLRLQIVRSLAQ----ITESTPAEIEALFELAQPISRVRAAPPRTKR---------- 449

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADI--RYDNNELQKLWSFLFSDFVEQKYFL 533
               P   E  ++  L++HP +  E  Q   DI   +     + L   +           
Sbjct: 450 --AAPQGLERQIMRLLVSHPILAAEMDQAALDIAAHFAPERAEMLVQLVTLSREMGPQAN 507

Query: 534 PEEIHQRLCERG--FGELLKQLDRQ------VRDAGLWSATTEANIVDVRQGYQQALALY 585
              + + L   G  F  L+ ++  +      +    L  A  +  +  +R    Q +A  
Sbjct: 508 FAILAELLRSSGSDFEPLIAEIAAEPESDVALARLELAGAIRQTKMQALRDELDQLVAAG 567

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                   +  E+  Q  Q+  + +AE    
Sbjct: 568 LVGEQAQARFRELTLQQDQLRRQAQAEMMQR 598


>gi|314918345|gb|EFS82176.1| DNA primase [Propionibacterium acnes HL050PA1]
          Length = 640

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 141/635 (22%), Positives = 253/635 (39%), Gaps = 45/635 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I  ++G+YV                 CPFHDEKTPSF    S+G 
Sbjct: 10  RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120
           +YCF C   GD +SF+  +   +F+E+VQRLA   GV L ++D      E  ++  ++  
Sbjct: 66  FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A +FF   +     +    ++  RG    A   F +GYAP   + LR+HL  KGF+ 
Sbjct: 126 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           + +IE+GL+          D F+ R+++PI+ S   V+ FG R +   +    KY+N+PE
Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K   LY    A   + K           S  ++VEGY DV++   +G+   V++ 
Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290

Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  +   RL+ +L          ++  FDGD  G +AA K            ++    
Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP   +   G  A  +L+   +PL   + +        +  D R          
Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVSQFDLDRADGRVAAIRAAAPL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  I+DQ L   Y + +   +         E S   R  +   +      P  +   S +
Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSHTRRQHRSEPQLTIVPPPEPQ-QGSGI 466

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                +      E   L   + HP +  E++ ++      +   Q ++  + +       
Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              +   +++ E      +KQL+  +    +     +       + Y +A A   R   +
Sbjct: 522 RGQDRWTEKVSEATPDPQVKQLEVALLVESVLREEPD-------RDYAEAYAARVRLLSI 574

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           +     ++ ++ +     + +    + S L  +  
Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA 609


>gi|259500590|ref|ZP_05743492.1| DNA primase [Lactobacillus iners DSM 13335]
 gi|302191281|ref|ZP_07267535.1| DNA primase [Lactobacillus iners AB-1]
 gi|259167974|gb|EEW52469.1| DNA primase [Lactobacillus iners DSM 13335]
          Length = 600

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 162/631 (25%), Positives = 275/631 (43%), Gaps = 41/631 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I ++   + I ++I QYV   ++       DY   CPFH EKTPSF  ++SK F+
Sbjct: 5   IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+   FL      SF ESV  +A IA + +P            +  + ++  
Sbjct: 60  KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117

Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            AT+F+ H L   +  +    Y+ ER + S  I  FK+GYAP +   L   L+QK +S++
Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
            + ++GL I         DRFR+RL+FP+    G  IAF GR +S    + KY+NSPET 
Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K K LY+F  A + +          N+ + +IL EGYMDV++  + G++  V+S+GT
Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NAENHLILYEGYMDVIAAYKCGIKTGVASMGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ +L +++P I++ +DGDDPG  A  +AI L      P   +  V L    DPD
Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNINLGIVSLPEHLDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++ YG   +   +  ++   + L +R ++  +     ++ +        I    D   
Sbjct: 344 EYVKKYGPEKYVNEVKAAITSTEFLLQRMSKKYNLFNDRDKLDFINESIALIAKNDDPIE 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477
              Y Q +  +LQ   +          R  +    + +      P+  +    L     S
Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPTDEVTPKQLDNVHSS 463

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 +  LL   I++         +     + N   Q+L     S   +         
Sbjct: 464 SVSFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLADLWLSYLEKNPNPNISGF 521

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              + +      L+ +   +    +    +E  I D      Q  +L K+  +L  + + 
Sbjct: 522 ADFIPKD-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EMQR 568

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +  QI     K +++    L   + E+  +I
Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599


>gi|229844309|ref|ZP_04464449.1| DNA primase [Haemophilus influenzae 6P18H1]
 gi|229812558|gb|EEP48247.1| DNA primase [Haemophilus influenzae 6P18H1]
          Length = 593

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 171/634 (26%), Positives = 289/634 (45%), Gaps = 55/634 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRPFIDDLLTKSDIVDVINARVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       F+E+++ LAA+AG+ +P         K +   + + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFVEAIEELAAMAGLEVPYEKRANNSGKPQANYQTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L++    F+ + L    + +   YL +RG+    IE F++G+ P++  ++       
Sbjct: 119 LYELMQEIAAFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+IE G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLNS
Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PETI +HKG  LY  + AL             +    +++VEGYMDV++L Q GV   V+
Sbjct: 235 PETITYHKGNELYGLYEALQA----------NDEPKQLLVVEGYMDVVALAQFGVDYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T  Q++L+++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD++IR YGK  FE+ I  +  L + ++   +    F+T + R +L       I+ I 
Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR      +  +L    Q  +              +        +  M         
Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     ++  L+ +P +++   +             ++   L +   +++     +
Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +      +   L+ L                +  D+   + Q      R   +   + 
Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +IE  IA+   +G   +   ++  L     Q  +
Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587


>gi|227892547|ref|ZP_04010352.1| DNA primase [Lactobacillus ultunensis DSM 16047]
 gi|227865668|gb|EEJ73089.1| DNA primase [Lactobacillus ultunensis DSM 16047]
          Length = 610

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 156/638 (24%), Positives = 286/638 (44%), Gaps = 46/638 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P +FI ++  ++ I ++I QYV  +++       DY   CPFH EKTPSF  N+ K F
Sbjct: 7   RIPEEFISEVRNNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNEEKQF 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESV+R+A  A +P+P      +      + ++R+ 
Sbjct: 62  FKCFGCGKGGNVFKFLMYKDNLTFPESVERVAEFAHIPMP--TGYGKGSAPKLSPIMRMH 119

Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + AT+F+H   L     +R   Y  +R +D   +E FK+GYAP     L  +LR KG+ +
Sbjct: 120 QDATEFYHRVLLTTKAGERGMQYAKKRELDHDTLEHFKIGYAPKQDNVLITYLRGKGYQD 179

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
           + + ++GL +   +    +DRFR+RL+FP+ +  G+ I F GR +S  ++  KY+NSPET
Sbjct: 180 DDLAKSGLFVQSKDG-RLFDRFRDRLMFPLDNENGKTIGFSGRRISNDKTEAKYMNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K K L++F  A    +          S   +IL EGYMDV++  +AGV++ ++S+G
Sbjct: 239 EIFTKSKVLFHFAEAKRAAR----------SEGHLILYEGYMDVIAAYKAGVKSGIASMG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ +L +++P I++ +DGDDPG+ A  +A  +          +  V+L    DP
Sbjct: 289 TSLTDDQIYMLRRVTPNIIVNYDGDDPGVHAEERAARMFNKDGNFNLGI--VVLPEKLDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D ++R YG   + + +  +L   D   KR  +  + +   E+          I+ +++  
Sbjct: 347 DEYVRKYGAEKYREEVKGALTPTDFFLKRLAQKYNLDNDREKITYLNEAIKEISQVRNPV 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL--S 477
            +  Y + +        +      +   R   +   H  Q         +S+ +      
Sbjct: 407 EQDMYVEKLARSAGVSIESLKANLARERRKNNRARSHMRQYRDYSVPTDTSIPESAPITE 466

Query: 478 KKPSLREAA-------LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
           + P   EA        LL   I+     +   +      + + + + L +          
Sbjct: 467 EVPQQTEAQQHPCQTRLLYLFIHAAQAQKYLLE--GHFHFPDKDFESLANLWIKYQETHD 524

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               +     + E+        L   + DA L     +  I +V +  Q       + R 
Sbjct: 525 NPQIDGFLDFIPEQ--------LQGIIVDAELAEMPKDFTIQEVDEYVQS-----LQKRS 571

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +  +  E++ Q+     K + ++   +   +  +   +
Sbjct: 572 IYSRLNELKNQLQDAKRKQDVQEILKITQEIIGLKRIL 609


>gi|315103505|gb|EFT75481.1| DNA primase [Propionibacterium acnes HL050PA2]
          Length = 623

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 144/654 (22%), Positives = 259/654 (39%), Gaps = 51/654 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I  ++G+YV                 CPFHDEKTPSF    S+G 
Sbjct: 10  RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120
           +YCF C   GD +SF+  +   +F+E+VQRLA   GV L ++D      E  ++  ++  
Sbjct: 66  FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A +FF   +     +    ++  RG    A   F +GYAP   + LR+HL  KGF+ 
Sbjct: 126 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           + +IE+GL+          D F+ R+++PI+ S   V+ FG R +   +    KY+N+PE
Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K   LY    A   + K           S  ++VEGY DV++   +G+   V++ 
Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290

Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  +   RL+ +L          ++  FDGD  G +AA K            ++    
Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP   +   G  A  +L+   +PL   + +        +  D R          
Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVNQFDLDRADGRVAAIRAAAPL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  I+DQ L   Y + +   +         E S   R   ++        P +    S +
Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSR-ARRQHRSEPQLTIAPPPKSEQGSGI 466

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                +      E   L   + HP +  E++ ++      +   Q ++  + +       
Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              +   +++ E      +KQL+       +          +  + Y +A A   R   +
Sbjct: 522 RGQDRWTEKVSEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 574

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +     ++ ++ +     + +    + S L  +   + +     ++I   G  S
Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA-LRK-----SLIVAGGAAS 622


>gi|324990503|gb|EGC22439.1| DNA primase [Streptococcus sanguinis SK353]
          Length = 602

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 146/634 (23%), Positives = 268/634 (42%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     Y   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL V        ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    ++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQEAASDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      + +        
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEVPTQQSQPVVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +I+HP ++  QY+   D  +D+ ELQ L+  L ++  E       
Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFAFDSEELQILYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|154482669|ref|ZP_02025117.1| hypothetical protein EUBVEN_00344 [Eubacterium ventriosum ATCC
           27560]
 gi|149736445|gb|EDM52331.1| hypothetical protein EUBVEN_00344 [Eubacterium ventriosum ATCC
           27560]
          Length = 587

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 157/609 (25%), Positives = 271/609 (44%), Gaps = 33/609 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  D I+ +     I ++IG YV   ++ +      Y+  CPFH+EK+PSF  +  K 
Sbjct: 1   MFYSEDIIEQVRTENNIVDVIGDYVKLQKKGS-----SYFGLCPFHNEKSPSFSVSPHKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+ +SFL      +F+E+++ LA  AG+ LP      +  +++ +++ +I
Sbjct: 56  MYYCFGCGEGGNVISFLMKYENYTFVEALEVLANRAGIELPKMEYSKEARQEKDLKSKII 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +   A  ++H+ L++ R K  ++YL  R +    I  F LGY+     +L ++LR KG+
Sbjct: 116 EINTEAAKYYHYLLRSDRGKTAYHYLKGRELSDKTIVKFGLGYSDKYSNNLYQYLRSKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           ++ ++ E GL           D+F NR++FPI  +  +VIAFGGR +      KYLNSPE
Sbjct: 176 NDTELKETGLFTFD-EVRGVNDKFWNRVMFPIMDANNRVIAFGGRVM-GDGKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K +NLY    A +  +             ++++ EGYMDV+SL QAG  N V++L
Sbjct: 234 TKVFDKSRNLYGLNVARSARK------------DYMLICEGYMDVISLHQAGFNNAVAAL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T     L+ + +   VL FD D+ G++AA +AI         G  +  + +   +D
Sbjct: 282 GTAFTSRHASLIKRYAKEAVLTFDSDEAGIKAALRAI---PYLRESGLAIKVLNMKPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G+ A+E+ I  +          E +N   N P E+   +  +   +   KD+
Sbjct: 339 PDEFIKNMGREAYEERIKTATNFFIFQVDNERKNYDLNDPQEKTAFQNKVAEMLLVFKDE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y  ++                      KK   +  ++   Q   Q    K     
Sbjct: 399 LERENYIDSVCQTFNISKDGLSRLVK------KKALNYVGKEETVQERQQVENKKSTKED 452

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LL  LI+     ++  Q ++   + +     +    +      K   P +I 
Sbjct: 453 AAIKTQRILLAYLIDRDNWFKKVAQVISPEDFIDPFYHDVAVRFWEQMESGKG-NPAQIM 511

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               +    + + +L      A L  A  E  I D     +++   Y+  +      +++
Sbjct: 512 DSYSDEEEHKKVAELFVSPIRANLSLAEQERAINDAVIKIKKSSLDYRASKA--TDIQDL 569

Query: 599 EKQIAQVTA 607
           +  I +   
Sbjct: 570 QNIIKEQNQ 578


>gi|325693941|gb|EGD35859.1| DNA primase [Streptococcus sanguinis SK150]
          Length = 602

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 145/634 (22%), Positives = 268/634 (42%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL V        ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    ++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMVGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAAASDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      + +        
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPTHQSQPVVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +I+HP ++  QY+   D  +D+ ELQ L+  L ++  E       
Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|115358007|ref|YP_775145.1| DNA primase [Burkholderia ambifaria AMMD]
 gi|115283295|gb|ABI88811.1| DNA primase [Burkholderia ambifaria AMMD]
          Length = 622

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 179/654 (27%), Positives = 282/654 (43%), Gaps = 63/654 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111
           +CF C   G  + FL    G +F E+VQ LA   G+ +P             D      +
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGDYPAPVSK 116

Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS--- 168
            + T L  ++ VA D++   L+         YL  RG+       F LGYAPD   +   
Sbjct: 117 SVATALSDVMSVACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLET 174

Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
                R +   E  ++      D    A  YDRFR R++FPIR+ +GQVI FGGR L  G
Sbjct: 175 AFPDYRDESLVESGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLGSG 234

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
           E  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L Q
Sbjct: 235 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALAQ 283

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
            G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A++  L H      +
Sbjct: 284 LGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTI 343

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
            F+ L    DPDS++R +G  AF + +  ++PL   L       ++ + P+ RA+     
Sbjct: 344 RFLFLPSEHDPDSYVREFGAEAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDA 403

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           K  +  +    LR        DRL   F++         R     ARH   +   +R+  
Sbjct: 404 KPLLQALPANALRAQIMHMFADRLDIPFEEVAALSDVDARIA-APARHAPPRSERRRVTD 462

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S              E   L TL+ HP I  +   E          + +L++ +      
Sbjct: 463 S--------------EKRALRTLVMHPRIASQLDDEQLATLRALPRIGELFAEVVEHARA 508

Query: 529 QKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ- 579
                    L + +        + E+ +++   D  VRD  L +   E      R+  + 
Sbjct: 509 LGDGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQERI 568

Query: 580 -----QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                QA  L  R+     + + + +Q        E  +   L     ++  ++
Sbjct: 569 AGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 620


>gi|328945883|gb|EGG40033.1| DNA primase [Streptococcus sanguinis SK1087]
          Length = 602

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 145/634 (22%), Positives = 268/634 (42%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     Y   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL V        ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGIPLAVETAGNDRPRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    ++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAAATDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMMVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      + +        
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPTQQSQPVVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +++HP ++  QY+   D  +D+ ELQ L+  L ++  E       
Sbjct: 468 RLNRLMRAENHIFHRMLHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLSDNVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|253576088|ref|ZP_04853420.1| DNA primase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844431|gb|EES72447.1| DNA primase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 612

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 157/634 (24%), Positives = 279/634 (44%), Gaps = 42/634 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I+ +L    I + + ++V   ++            CPFH EKTPSF     +  +
Sbjct: 12  IPEEVIEAVLRQHDIVDTVSKHVHLTKQGK-----YLKGLCPFHSEKTPSFTVTPERQIF 66

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----KIEKKEKIQTDLI 118
           +C+ C   G+ + F   + G +F E+V+ +A  A +  P  D         + +   +L+
Sbjct: 67  HCYGCGKGGNAIKFRMEIEGLTFPEAVRIMADEAHI--PYEDKGRGYADTPRNRELEELL 124

Query: 119 RLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E ++  +H+ LKN    K    YL  RG    AI+ F++GYAP    +L + L ++ 
Sbjct: 125 QAHEWSSKLYHYLLKNTEYGKPAMEYLKSRGFTDKAIDTFQIGYAPARWDTLVQFLDKRS 184

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           F+ E + + GLL    + +   DRFR+R+IFP+ +  G+VIAF GR L      KYLNSP
Sbjct: 185 FNLETMEKGGLLSSKQDGSGYVDRFRDRVIFPLHNRNGKVIAFAGRVL-GDGQPKYLNSP 243

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ LF K + LYN   A N ++K          +  I+L EGY DV+S  +AGV N V++
Sbjct: 244 ESKLFTKSRVLYNLHQAKNEIRK----------TGQIVLFEGYGDVISAWEAGVHNGVAT 293

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE+   ++  L+  +++C+DGD  G  AA K+I ++        +V   +LS G 
Sbjct: 294 MGTALTEHHAAIMRSLADEVLVCYDGDSAGQAAALKSIPILEGAGFS--QVKIAMLSEGL 351

Query: 358 DPDSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD FI+ YG   F  +++  ++  V        +N      D +        + I  + 
Sbjct: 352 DPDEFIQKYGAERFRHQVLDGAVSSVKFRLIYLRKNHILLEEDGKIAYIKEAMSIIAALS 411

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ---RLMQSSLVK 473
               R  Y + +   LQ  F     E +      +K A   D K       R  +     
Sbjct: 412 SPSEREIYLKELSAELQVSFDSLKQECNELRTAMQKKANAGDNKPERWNNGRHKKGQASM 471

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             L     + E  LL  ++    + +   + L    ++  +   + ++L++ + + K   
Sbjct: 472 PTLLPAFHVAERRLLSFMLQDEEVSRYVGERLGT-NFNIEDHVAIAAYLYAYYAQGKPPD 530

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                  L +        +L++ V    +     E    ++    ++      +   L  
Sbjct: 531 ASRFISSLQDE-------RLEQTVISIAMMDTPAEWTTQELDDCIREI-----QKVPLLE 578

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           Q +  ++++      G+  + A + S +  +  Q
Sbjct: 579 QIKRKKEEMVSAERAGDYLRAAQIASEIIALERQ 612


>gi|118581453|ref|YP_902703.1| DNA primase [Pelobacter propionicus DSM 2379]
 gi|118504163|gb|ABL00646.1| DNA primase [Pelobacter propionicus DSM 2379]
          Length = 584

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 156/633 (24%), Positives = 261/633 (41%), Gaps = 54/633 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   +++++    I  ++ +YV   R   N     Y   CPFH EKTPSF+ N ++  +
Sbjct: 2   IPDHKVREVVERASIVEVVSEYVPLRRSGAN-----YLGLCPFHAEKTPSFNVNPAREIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C V G+ +SF+  + G SF ESV+ LA   GV +      P  ++ ++      R+
Sbjct: 57  HCFGCGVGGNVISFVMKIEGLSFPESVKLLARKTGVDIEERLLTPAEKQAQEEHKIFRRI 116

Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E+A  ++   L + +       YL++R       E + LG+APD R  L ++L+ +G S
Sbjct: 117 QELAAAYYCGVLQRASEAGLAREYLEKRNASGQIAETYGLGFAPDRRDGLVQYLKSQGAS 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            +  +   L I        +D FRNRLIFP+RS +G VIAF GR L  G   KY+NSPE+
Sbjct: 177 LDLAL--KLGIVRKGDRGWHDLFRNRLIFPVRSPKGDVIAFAGRVL-DGSLPKYINSPES 233

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            L+HK   L+    AL  ++          + + +I+VEGY D L+L +AGV+NVV++ G
Sbjct: 234 PLYHKSSVLFGLDLALPAIR----------TENSVIIVEGYFDHLALYRAGVRNVVATCG 283

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALT     L+ +   R    FDGD  G +A  ++++L    L        + L  G+DP
Sbjct: 284 TALTARHAALIKRHCARAFTLFDGDSAGQKATIRSMEL---FLEQKLPAYVIDLPAGDDP 340

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DSF+      AF      + P  +   +    +   ++ D +  +   L      I D  
Sbjct: 341 DSFLDANSVEAFRSCQKNAKPAFEYFIRYVMASIPADSVDSKVRIVDELVPRFRKIADPL 400

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y + I   L      +     G                P                 
Sbjct: 401 ERDLYEKEICRLLGIASHAFRKRLGGMDVNSHDLTEGGKGGTPPGDS------------- 447

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-LPEEIH 538
              R+  LL  +  +P    E   +    +  + +   L  F+  +            + 
Sbjct: 448 ---RQETLLGLICAYPEACSEVA-KCGVDKLFDGQYLALARFVLDEVAANGQLRTLSHVV 503

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            ++        L +L   V D  L             +   ++  L +    L    ++I
Sbjct: 504 DKIESEELKLFLSRL--LVSDNHLEGVD--------WKDVFESCRLIREKSALHYGYKDI 553

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             ++AQ+      E+   L+     +  +  ++
Sbjct: 554 AARLAQLEPG--CEEYMSLLQQAELLRTRKSRL 584


>gi|332365902|gb|EGJ43658.1| DNA primase [Streptococcus sanguinis SK1059]
          Length = 602

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 145/634 (22%), Positives = 269/634 (42%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL V     +  ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGIPLAVETAGNDRLRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    ++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAAASDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----KDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      + +        
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPTQQSQPVVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +I+HP ++  QY+   D  +D+ ELQ L+  L ++  E       
Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|188590265|ref|YP_001920275.1| DNA primase [Clostridium botulinum E3 str. Alaska E43]
 gi|188500546|gb|ACD53682.1| putative DNA primase [Clostridium botulinum E3 str. Alaska E43]
          Length = 592

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 165/625 (26%), Positives = 286/625 (45%), Gaps = 41/625 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P++ I+ +     I ++I + V   R   N     +   CPFH +KTPSF  +  K 
Sbjct: 1   MQIPQEIIEKVKEQTDIVDIISESVRLKRTGKN-----FIGLCPFHSDKTPSFSVSQEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y CFSC   G+ L+F+      +F+E+V+ LA  A +P+ +   +  +  K +  L ++
Sbjct: 56  IYKCFSCGEAGNVLTFIMKQKNLTFVEAVKYLANKANIPINLHSNETPQFIKKREILYKI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A  ++  +L+     +   Y   RGI    I+ F LGY+ +S   L  +LR KG+ +
Sbjct: 116 NVEAGRYYFTNLQKIHLAKD--YFLNRGIKEATIKKFGLGYSKNSWRDLITYLRTKGYKD 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++EAGL+         YDRFRNR++FP+   +G+VI FGGR L      KYLNSPET 
Sbjct: 174 DFLLEAGLVSKNQEKGNIYDRFRNRVMFPVFDVKGRVIGFGGRVL-DDSKPKYLNSPETT 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F KG NLY    A+    K            ++I+VEGYMD+++L Q GV NVV+SLGT
Sbjct: 233 IFQKGINLYGLNFAVKNKLK----------EDYMIIVEGYMDLITLHQYGVTNVVASLGT 282

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q +LL + +  +++ +D D  G  A  + +++       G  V  +++ +G+DPD
Sbjct: 283 ALTNNQAKLLKRYTNNVIISYDADIAGQTATLRGLEI---LRNSGFEVKVLIIPQGKDPD 339

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            F+R  GK AF KL  E+LPL++   KR  E  +    +   +    +   +  + +   
Sbjct: 340 EFVRSNGKDAFLKLAREALPLIEYRIKRIGEGINLKDRNNLIKYGEKVAKILADL-NPVE 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + I +      Q      S      +K   + ++K       +    K  +    
Sbjct: 399 KDVYIKKISEDTGIKEQALYDLLSQVMSKNQKEDNYVNKK-------EDFGTKLYVEPAY 451

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E ALL  ++N   I  +    ++   +  +  ++++S +     E    +   +  R
Sbjct: 452 LKAERALLKLMLNQ-EIYDQIKDSMSSGDFILDSHKRIYSLILESKNENSNNIESYVENR 510

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E      ++     +    L      +N   +   Y   +  +K    L  +  +++ 
Sbjct: 511 CDE------IESSKEWIAIKELEVLDL-SNKDKLINDYLNEVKCFK----LQLEINDLKN 559

Query: 601 QIAQVTAKGEAEKTAILISILHEVH 625
           +  ++  KG  E++  L   L  + 
Sbjct: 560 EQKRLEDKGMIEESIKLAVKLTNLE 584


>gi|324995457|gb|EGC27369.1| DNA primase [Streptococcus sanguinis SK678]
          Length = 602

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 145/634 (22%), Positives = 269/634 (42%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL V     ++  +      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGIPLAVETAGNDRSRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    ++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAAASDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      + +        
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPTHQSQPVVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +I+HP ++  QY+   D  +D+ ELQ L+  L ++  E       
Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|315038508|ref|YP_004032076.1| DNA primase [Lactobacillus amylovorus GRL 1112]
 gi|325956924|ref|YP_004292336.1| DNA primase [Lactobacillus acidophilus 30SC]
 gi|312276641|gb|ADQ59281.1| DNA primase [Lactobacillus amylovorus GRL 1112]
 gi|325333489|gb|ADZ07397.1| DNA primase [Lactobacillus acidophilus 30SC]
 gi|327183704|gb|AEA32151.1| DNA primase [Lactobacillus amylovorus GRL 1118]
          Length = 610

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 148/639 (23%), Positives = 277/639 (43%), Gaps = 49/639 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P +FI ++  ++ I ++I QYV  +++       DY   CPFH EKTPSF  N+ K F
Sbjct: 4   RIPEEFINEVRSNVNIVDIISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNEEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESV+R+A  A + +P               L+R+ 
Sbjct: 59  FKCFGCGKGGNVFKFLMYKDNLTFPESVERVAEFAHIAMPQGYGNN--DGSKMNPLMRMH 116

Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A +F+H   L     +R   Y  +R +D   ++ F +GYAP     L  +LR KG+ +
Sbjct: 117 KDAAEFYHRVLLTTKAGERGMQYAQKRQLDQKVLDHFNIGYAPKEDNVLITYLRGKGYQD 176

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
           +++ ++GL ++  +    +DRFR+RL+FP+ +  G+ I F GR +S  ++  KY+NSPET
Sbjct: 177 DELQKSGLFVESKDG-RLFDRFRDRLMFPLDNENGRTIGFSGRRISDDKTEAKYMNSPET 235

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K K L++F  A    +          S   +IL EGYMDV++  +AG+ + ++S+G
Sbjct: 236 SIFTKSKVLFHFAEAKKAAR----------SEQHLILYEGYMDVIAAYKAGISSGIASMG 285

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ LL +++  I++ +DGD PG+ A  +A  +          +  V+L    DP
Sbjct: 286 TSLTDDQIYLLRRVTTNIIINYDGDPPGIHAEERAARMFNKAGNFNLGI--VVLPDNLDP 343

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG   ++  +  +    +   +R  +  + N   E+          I  +++  
Sbjct: 344 DEYVKKYGAEKYQNEVNGAKTPTEFFLERLAKKYNLNNDREKITYLDEAVKEIAQVRNPV 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y + +    Q          +   R   +   H  Q+        S+       + 
Sbjct: 404 ERDMYIEQLARNAQVSSASLKANLARELRRNNRAKSHMRQQSNYSAPTPSTDEMQPSFES 463

Query: 480 PS------------LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
                          R+  LL   I+     +   +   +  + + + ++L         
Sbjct: 464 AETATIQQTAGQRHPRQVRLLYLFIHSQQAQKYLQE--GNFHFPDKDFEELAQLWIKYKE 521

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                  +     + E+        L   + DA + +   +  I ++ +  Q       +
Sbjct: 522 THDNPQIDGFLDFIPEQ--------LQGIIVDAEMANMPKDFTIQEINEYVQS-----LQ 568

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            R +  +  E+  Q+     K + ++   L   + E+  
Sbjct: 569 KRNIYSRLNELNNQLQDAMRKQDRDECLRLTQKIIELKR 607


>gi|225076459|ref|ZP_03719658.1| hypothetical protein NEIFLAOT_01505 [Neisseria flavescens
           NRL30031/H210]
 gi|224952138|gb|EEG33347.1| hypothetical protein NEIFLAOT_01505 [Neisseria flavescens
           NRL30031/H210]
          Length = 590

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 187/629 (29%), Positives = 296/629 (47%), Gaps = 48/629 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL  + I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLSKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK   +     YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLK--FNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY        ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLHEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGKT FE  L+ +S PL +  W+  ++  + NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKTQFEDALLNQSKPLSEYFWEHLSDGLNLNTQEGKAELIKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + +  K P   + Q +++   
Sbjct: 400 TAPALGYLLKQKLSELVGIDPDNLAQLLGQEA--PKRHVKQKSYKLPPISVKQPTML--- 454

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                +L +  +   LIN PA       +L D    + +   L +   +           
Sbjct: 455 -----TLVQRQIRSLLIN-PAWASYI--DLPDYLALSGDFACLANLAETIKHHDTTPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + Q+      +       E +    + G ++ L   K       Q 
Sbjct: 507 QVLEYMRGSPYEETVNQIFLSTLHSEEMEGDNEEDCESFQIGMKKLLNELK-----YSQI 561

Query: 596 EEIEKQ-IAQVTAKGEAEKTAILISILHE 623
           E ++++ I     + E      L++    
Sbjct: 562 ETLKQKSIQTGLTENEKRLLLSLLTAKQN 590


>gi|260912697|ref|ZP_05919183.1| DNA primase [Pasteurella dagmatis ATCC 43325]
 gi|260633075|gb|EEX51240.1| DNA primase [Pasteurella dagmatis ATCC 43325]
          Length = 582

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 186/631 (29%), Positives = 299/631 (47%), Gaps = 58/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I  LI   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRTFIDDLLAKTDIVELINSRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----KIEKKEKIQTDL 117
           Y+CF C   G+ +SFL       FIE+++ LA + G+ +P  +       +   + + +L
Sbjct: 59  YHCFGCGAHGNAISFLMEYDKLEFIEAIEELAGMLGLEIPRENKPHFNNKQINYQTKRNL 118

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             L++   +F+   L      +   YL +RG+ S  I  F++G+ P+S  ++ +H  +  
Sbjct: 119 YELMQTIAEFYQQQLAQHIPAQS--YLQQRGLSSEIIARFQIGFVPNSFDAVLQHFGRSN 176

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
             ++K+ + G+L         YDRFR+R++FPIR  RG+ IAFGGR L   E  KYLNSP
Sbjct: 177 EDQQKLFDLGMLSRN-EQGKIYDRFRHRIMFPIRDRRGRTIAFGGRVL-GDEKPKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET  +HKG  LY  + AL           +  +   +++VEGYMDV++L Q GV   V+S
Sbjct: 235 ETATYHKGNELYGLYEALQ----------KNETPEMLLVVEGYMDVVALAQFGVDYAVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA T  Q++LL++ + + + C+DGD  G  AA++A +  L +L  G ++ F+ L  GE
Sbjct: 285 LGTATTAEQIQLLFRSTEQAICCYDGDRAGREAAWRAFENALPYLEDGRQLKFIFLPDGE 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSFIR YGK+ FE+ I ++L L + L+   T    F+T + + +L       I  I  
Sbjct: 345 DPDSFIRQYGKSGFEEYIQKALSLSEFLFSSLTPQVDFSTKEGKTKLAALAVPLIKKIPG 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             LR      +  +L  L Q  +          K +++ +  K                 
Sbjct: 405 AMLRLSLRNTLAQKLGILDQAQLENLIPTHSEIKTSSQPQAVKRTPM------------- 451

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                    L+  L+ +P + Q     L  +R  N     L+  L +   E+      +I
Sbjct: 452 -------RVLIALLLQNPELAQLVP-NLTPLRVLNESGLDLFEKLTALCQEKIGITTGQI 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +   +  + + L+ L        +W    E     + + ++  L  Y  F+L+ R+ + 
Sbjct: 504 LEYWRDSEYSKALEILA-------MWDHLVE--EEQIEENFKATLR-YFYFQLVEREIDS 553

Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627
           +   IA+  A+G    +   L  +L +   +
Sbjct: 554 L---IAKDRAEGLSVNERQKLTQLLLKKQQK 581


>gi|145589879|ref|YP_001156476.1| DNA primase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048285|gb|ABP34912.1| DNA primase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 645

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 179/666 (26%), Positives = 284/666 (42%), Gaps = 72/666 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL  + I +++GQ+V   +   N     Y   CPFH EK+PSF  + +K FY
Sbjct: 4   IPQSFIADLLNRVDIVDVVGQHVKLKKAGAN-----YQGLCPFHSEKSPSFSVSPTKQFY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
           +CF C   G  +SF+    G  +++S++ LA  AG+ +P  +       +++    L  +
Sbjct: 59  HCFGCGAHGSAISFMMEYSGLGYVDSIEELARSAGLDVPREERAANDVARQQQAMALSEV 118

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A D++   LK     R   YL  RG+     + + LGYAPD    L          E
Sbjct: 119 MSSAADWYRQQLKGN--TRAVEYLKGRGLTGEIAKRYSLGYAPDGWQGLEAVFGPYSNDE 176

Query: 181 EKI--IEAGLLIDGDN----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
                +E GL+I G+         YDRFR+R++FPIR+ +GQ I FGGR L +GE  KYL
Sbjct: 177 VAKTLVEGGLIIQGEQAEGAPVKRYDRFRDRVMFPIRNPKGQTIGFGGRILDQGEP-KYL 235

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET LF KG  LY  F A   ++             ++++ EGYMDV++L Q G  N 
Sbjct: 236 NSPETPLFSKGNTLYGLFEARQAIRAQ----------EYVLVCEGYMDVVALAQLGFPNA 285

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V++LGTA T   +R+L + + RIV  FDGD  G RAA +A++  L  +     + F+ L 
Sbjct: 286 VATLGTACTANHVRMLLRQTDRIVFSFDGDSAGQRAAQRALEACLPLMSDDKEIRFLFLP 345

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPDS++R YG  AFEK+I E++ +    +K  +E     TP+ RA      K  +  
Sbjct: 346 TEHDPDSYVRAYGAPAFEKVIKEAMSISSFFFKIASEGHELTTPEGRAHTHHAAKPLLLS 405

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQK-------------------YITEHSGYGRYWKKNAR 455
           +    LR    + +  R      +                     T+      +     R
Sbjct: 406 MPPIALRTQILRELAIRTNTTPAELEAFCGLTVVPAPVQKQAYQPTQARSQNNFSNTGNR 465

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ-----ELADIRY 510
                  S+   +      +  K P+     +L  LI  P + +          L     
Sbjct: 466 QGAPWQASKGSAKRVAQNIEPPKAPTDLAEQMLRVLIQFPHLGKALDGNKRTLALKAAEQ 525

Query: 511 DNNELQKLWSFLFSDF-------------VEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
            + +   L   L S                            +L       L + L ++V
Sbjct: 526 RSTKAHALMQDLLSQCDLVELVPGDAGKPASVGAGSFAMFQDQLSRSELAPLYEVLRKRV 585

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA-KGEAEKTAI 616
            D+ L     +  + D+   +++          L ++  EI ++++  TA + +  +   
Sbjct: 586 MDSDL---DLDGAVADLDGAFKK-----LELTHLKQEMTEITQRLSGGTATEQDRARYRE 637

Query: 617 LISILH 622
           L   L 
Sbjct: 638 LGEKLK 643


>gi|260893572|ref|YP_003239669.1| DNA primase [Ammonifex degensii KC4]
 gi|260865713|gb|ACX52819.1| DNA primase [Ammonifex degensii KC4]
          Length = 611

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 172/628 (27%), Positives = 286/628 (45%), Gaps = 47/628 (7%)

Query: 1   MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M    P +F+K++L    I  L+G+YV   R+  N     Y   CPFH E+TPSF  +  
Sbjct: 1   MRGYVPPEFVKEVLDRTDIVALVGEYVRLKRQGKN-----YVGLCPFHAERTPSFTVSPE 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTD 116
           K F+YCF C V GD L FL       F+E+++RLA  AG+ LP          + +   +
Sbjct: 56  KQFFYCFGCGVGGDALKFLMLQEKLDFLEALERLALRAGLSLPSQSRDPAWLARRRELEE 115

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
              L  ++ +FF  SL   R +    YL+ERG+       F LGYAP    +L  +LR +
Sbjct: 116 GEELNRLSLEFFTASLWGERGEPARRYLEERGVSEEIARRFSLGYAPPEEEALLRYLRAR 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G ++E  ++ GL     ++    DRFR RLIFPI   +G+V+ FGGR L      KYLNS
Sbjct: 176 GITKEAAVKWGLASRT-SAGRVVDRFRGRLIFPIFDPQGKVVGFGGRALVSYLQPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET LF+K   LY  + A + ++          ++ F +LVEGY+D ++L Q G    V+
Sbjct: 235 PETPLFNKRNELYGLYQAKDAIR----------AAGFAVLVEGYLDAITLHQFGFGYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+LT+ Q+RLL + + ++ + +D D  G  A ++ +D+       G  V  V L +G
Sbjct: 285 SLGTSLTQEQVRLLSRYTGKVYIAYDSDTAGEAATWRGLDI---LAGAGLEVLVVELPQG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPD F+R  G  A+E  +  +LPL++   K+          D + +    L   +  ++
Sbjct: 342 KDPDEFLRALGPAAWEASLASALPLLEYKGKKLMAGGLVTARD-KLKALRALLPNLACLR 400

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               R    + +       ++    E   +    +   R +  K         +  +   
Sbjct: 401 TLPEREEGIRLVSRITGLSWEVVRDELLRFTGEEEVTTRLKSDKS------AKNKHEALE 454

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           S+     E  LL  L   P IL E  +   +  + +   + ++S L       +   P  
Sbjct: 455 SRACFAAERGLLQALFCRPEILAEVEEAGGEELFTHPPCRAVYSALKEALAAGEDISPTH 514

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +  RL E                AG+     E+        ++  L  + R  L+ ++++
Sbjct: 515 LASRLPEEALDAA----------AGILVGEEESPP------WKDCLR-FLRMNLVRQKRK 557

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEV 624
           ++  +++   A+G+ E+    +  L  +
Sbjct: 558 QLAGKLSLAEARGDEEEVRRCLEELQAL 585


>gi|150015738|ref|YP_001307992.1| DNA primase [Clostridium beijerinckii NCIMB 8052]
 gi|149902203|gb|ABR33036.1| DNA primase [Clostridium beijerinckii NCIMB 8052]
          Length = 596

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 167/633 (26%), Positives = 291/633 (45%), Gaps = 38/633 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + ++ +     I ++I + V   +   N     +   CPFH++K+PSF  +  K 
Sbjct: 1   MQISEEVLERIKEQNDIVDIISEDVRLKKSGRN-----FMGLCPFHNDKSPSFSVSSEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y CFSC   G+ L+F+      +FIE+ + LA  A +PL + D +     + +  L ++
Sbjct: 56  IYKCFSCGEAGNVLTFVMKYKKLTFIEAAKYLADKANIPLQINDNENSAVSRKKEFLYKV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
                 ++  +L+    K    Y  +RGI    I+ F LGY+ DS + L  +LR KG+ +
Sbjct: 116 NVETARYYFANLQRI--KMAKEYFLKRGIKEETIKRFGLGYSQDSWHGLTNYLRTKGYKD 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             ++EAGL+   + S   YD+FRNR++FP+   RG+VI FGGR L      KYLNSPET+
Sbjct: 174 NLLLEAGLISKSEKSGNVYDKFRNRVMFPVFDVRGKVIGFGGRVL-DDSKPKYLNSPETM 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F KG NLY    A+    K            +II+VEGYMD++SL Q+G+ NVV+SLGT
Sbjct: 233 IFQKGINLYGLNFAIKNKLK----------EDYIIIVEGYMDLISLHQSGITNVVASLGT 282

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q RLL +   ++++ +D D  G  A  + +++       G  V  +++  G+DPD
Sbjct: 283 ALTVNQARLLKRYVNKVIISYDADLAGQTATLRGLEI---LRGAGFDVKVLIVPDGKDPD 339

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            F+R +GK +F KL  E+LPL++   K+  E  + N+ ++  E        +  + +   
Sbjct: 340 EFVRNHGKESFLKLANEALPLIEYRIKKAAEGINLNSGNDLVEYGEKFAEILADL-NPIE 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + I +      Q      S      +K     ++K       +    K  +    
Sbjct: 399 KDVYIRKISEETAIKEQALYDLLSQVITKKQKEDNFVNKK-------EYFGTKLYVEPAY 451

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E ALL  +        E    +    +      K++S +     E        I   
Sbjct: 452 LKAERALLKLMFKD-EFYDEIKSSIKSGDFVIESHNKIYSLILQGKSEDTN-DIGNIESY 509

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +  R       +   ++R+  +       +   + + Y + +  +K    L  Q E+++K
Sbjct: 510 VESRCDDIESSKELTKIREHEILDF---TDRERLIKDYLKEVRGFK----LKLQIEDLKK 562

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +  +   +G+ E++  +   L ++   + + E 
Sbjct: 563 KQNRFEKEGKIEESIKIAIELTKLSEALKKGER 595


>gi|282854098|ref|ZP_06263435.1| DNA primase [Propionibacterium acnes J139]
 gi|282583551|gb|EFB88931.1| DNA primase [Propionibacterium acnes J139]
          Length = 617

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 144/654 (22%), Positives = 259/654 (39%), Gaps = 51/654 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I  ++G+YV                 CPFHDEKTPSF    S+G 
Sbjct: 4   RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120
           +YCF C   GD +SF+  +   +F+E+VQRLA   GV L ++D      E  ++  ++  
Sbjct: 60  FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 119

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A +FF   +     +    ++  RG    A   F +GYAP   + LR+HL  KGF+ 
Sbjct: 120 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 179

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           + +IE+GL+          D F+ R+++PI+ S   V+ FG R +   +    KY+N+PE
Sbjct: 180 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K   LY    A   + K           S  ++VEGY DV++   +G+   V++ 
Sbjct: 235 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 284

Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  +   RL+ +L          ++  FDGD  G +AA K            ++    
Sbjct: 285 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 341

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP   +   G  A  +L+   +PL   + +        +  D R          
Sbjct: 342 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVNQFDLDRADGRVAAIRAAAPL 401

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  I+DQ L   Y + +   +         E S   R   ++        P +    S +
Sbjct: 402 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSR-ARRQHRSEPQLTIVPPPKSEQGSGI 460

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                +      E   L   + HP +  E++ ++      +   Q ++  + +       
Sbjct: 461 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 515

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              +   +++ E      +KQL+       +          +  + Y +A A   R   +
Sbjct: 516 RGQDRWTEKVSEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 568

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +     ++ ++ +     + +    + S L  +   + +     ++I   G  S
Sbjct: 569 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA-LRK-----SLIVAGGAAS 616


>gi|314923071|gb|EFS86902.1| DNA primase [Propionibacterium acnes HL001PA1]
 gi|314966841|gb|EFT10940.1| DNA primase [Propionibacterium acnes HL082PA2]
 gi|314981183|gb|EFT25277.1| DNA primase [Propionibacterium acnes HL110PA3]
 gi|315092003|gb|EFT63979.1| DNA primase [Propionibacterium acnes HL110PA4]
 gi|315093238|gb|EFT65214.1| DNA primase [Propionibacterium acnes HL060PA1]
 gi|327327667|gb|EGE69443.1| DNA primase [Propionibacterium acnes HL103PA1]
          Length = 623

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 144/654 (22%), Positives = 259/654 (39%), Gaps = 51/654 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I  ++G+YV                 CPFHDEKTPSF    S+G 
Sbjct: 10  RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120
           +YCF C   GD +SF+  +   +F+E+VQRLA   GV L ++D      E  ++  ++  
Sbjct: 66  FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A +FF   +     +    ++  RG    A   F +GYAP   + LR+HL  KGF+ 
Sbjct: 126 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           + +IE+GL+          D F+ R+++PI+ S   V+ FG R +   +    KY+N+PE
Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K   LY    A   + K           S  ++VEGY DV++   +G+   V++ 
Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290

Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  +   RL+ +L          ++  FDGD  G +AA K            ++    
Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP   +   G  A  +L+   +PL   + +        +  D R          
Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVNQFDLDRADGRVAAIRAAAPL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  I+DQ L   Y + +   +         E S   R   ++        P +    S +
Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSR-ARRQHRSEPQLTIVPPPKSEQGSGI 466

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                +      E   L   + HP +  E++ ++      +   Q ++  + +       
Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              +   +++ E      +KQL+       +          +  + Y +A A   R   +
Sbjct: 522 RGQDRWTEKVSEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 574

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +     ++ ++ +     + +    + S L  +   + +     ++I   G  S
Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA-LRK-----SLIVAGGAAS 622


>gi|289425170|ref|ZP_06426947.1| DNA primase [Propionibacterium acnes SK187]
 gi|289427215|ref|ZP_06428931.1| DNA primase [Propionibacterium acnes J165]
 gi|295130518|ref|YP_003581181.1| DNA primase [Propionibacterium acnes SK137]
 gi|289154148|gb|EFD02836.1| DNA primase [Propionibacterium acnes SK187]
 gi|289159684|gb|EFD07872.1| DNA primase [Propionibacterium acnes J165]
 gi|291376847|gb|ADE00702.1| DNA primase [Propionibacterium acnes SK137]
          Length = 617

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 144/654 (22%), Positives = 259/654 (39%), Gaps = 51/654 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I  ++G+YV                 CPFHDEKTPSF    S+G 
Sbjct: 4   RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120
           +YCF C   GD +SF+  +   +F+E+VQRLA   GV L ++D      E  ++  ++  
Sbjct: 60  FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 119

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A +FF   +     +    ++  RG    A   F +GYAP   + LR+HL  KGF+ 
Sbjct: 120 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 179

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           + +IE+GL+          D F+ R+++PI+ S   V+ FG R +   +    KY+N+PE
Sbjct: 180 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K   LY    A   + K           S  ++VEGY DV++   +G+   V++ 
Sbjct: 235 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 284

Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  +   RL+ +L          ++  FDGD  G +AA K            ++    
Sbjct: 285 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 341

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP   +   G  A  +L+   +PL   + +        +  D R          
Sbjct: 342 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVSQFDLDRADGRVAAIRAAAPL 401

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  I+DQ L   Y + +   +         E S   R  +   +      P  +   S +
Sbjct: 402 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSHTRRQHRSEPQLTIVPPPEPQ-QGSGI 460

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                +      E   L   + HP +  E++ ++      +   Q ++  + +       
Sbjct: 461 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 515

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              +   +++ E      +KQL+       +          +  + Y +A A   R   +
Sbjct: 516 RGQDRWTEKVSEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 568

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +     ++ ++ +     + +    + S L  +   + +     ++I   G  S
Sbjct: 569 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA-LRK-----SLIVAGGAAS 616


>gi|50842441|ref|YP_055668.1| DNA primase [Propionibacterium acnes KPA171202]
 gi|50840043|gb|AAT82710.1| DNA primase [Propionibacterium acnes KPA171202]
 gi|313772425|gb|EFS38391.1| DNA primase [Propionibacterium acnes HL074PA1]
 gi|313792225|gb|EFS40326.1| DNA primase [Propionibacterium acnes HL110PA1]
 gi|313801826|gb|EFS43060.1| DNA primase [Propionibacterium acnes HL110PA2]
 gi|313807436|gb|EFS45923.1| DNA primase [Propionibacterium acnes HL087PA2]
 gi|313809943|gb|EFS47664.1| DNA primase [Propionibacterium acnes HL083PA1]
 gi|313813019|gb|EFS50733.1| DNA primase [Propionibacterium acnes HL025PA1]
 gi|313818481|gb|EFS56195.1| DNA primase [Propionibacterium acnes HL046PA2]
 gi|313820244|gb|EFS57958.1| DNA primase [Propionibacterium acnes HL036PA1]
 gi|313822946|gb|EFS60660.1| DNA primase [Propionibacterium acnes HL036PA2]
 gi|313825125|gb|EFS62839.1| DNA primase [Propionibacterium acnes HL063PA1]
 gi|313827694|gb|EFS65408.1| DNA primase [Propionibacterium acnes HL063PA2]
 gi|313830274|gb|EFS67988.1| DNA primase [Propionibacterium acnes HL007PA1]
 gi|313834075|gb|EFS71789.1| DNA primase [Propionibacterium acnes HL056PA1]
 gi|313838652|gb|EFS76366.1| DNA primase [Propionibacterium acnes HL086PA1]
 gi|314925131|gb|EFS88962.1| DNA primase [Propionibacterium acnes HL036PA3]
 gi|314960082|gb|EFT04184.1| DNA primase [Propionibacterium acnes HL002PA2]
 gi|314962883|gb|EFT06983.1| DNA primase [Propionibacterium acnes HL082PA1]
 gi|314973280|gb|EFT17376.1| DNA primase [Propionibacterium acnes HL053PA1]
 gi|314975955|gb|EFT20050.1| DNA primase [Propionibacterium acnes HL045PA1]
 gi|314978287|gb|EFT22381.1| DNA primase [Propionibacterium acnes HL072PA2]
 gi|314984026|gb|EFT28118.1| DNA primase [Propionibacterium acnes HL005PA1]
 gi|314990011|gb|EFT34102.1| DNA primase [Propionibacterium acnes HL005PA3]
 gi|315080727|gb|EFT52703.1| DNA primase [Propionibacterium acnes HL078PA1]
 gi|315084398|gb|EFT56374.1| DNA primase [Propionibacterium acnes HL027PA2]
 gi|315085737|gb|EFT57713.1| DNA primase [Propionibacterium acnes HL002PA3]
 gi|315088844|gb|EFT60820.1| DNA primase [Propionibacterium acnes HL072PA1]
 gi|315096193|gb|EFT68169.1| DNA primase [Propionibacterium acnes HL038PA1]
 gi|315105464|gb|EFT77440.1| DNA primase [Propionibacterium acnes HL030PA1]
 gi|315108410|gb|EFT80386.1| DNA primase [Propionibacterium acnes HL030PA2]
 gi|327326109|gb|EGE67899.1| DNA primase [Propionibacterium acnes HL096PA2]
 gi|327332020|gb|EGE73757.1| DNA primase [Propionibacterium acnes HL096PA3]
 gi|327443223|gb|EGE89877.1| DNA primase [Propionibacterium acnes HL013PA2]
 gi|327446007|gb|EGE92661.1| DNA primase [Propionibacterium acnes HL043PA2]
 gi|327448013|gb|EGE94667.1| DNA primase [Propionibacterium acnes HL043PA1]
 gi|327453060|gb|EGE99714.1| DNA primase [Propionibacterium acnes HL092PA1]
 gi|328753550|gb|EGF67166.1| DNA primase [Propionibacterium acnes HL020PA1]
 gi|328760672|gb|EGF74239.1| DNA primase [Propionibacterium acnes HL099PA1]
 gi|332675353|gb|AEE72169.1| DNA primase [Propionibacterium acnes 266]
          Length = 623

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 144/654 (22%), Positives = 259/654 (39%), Gaps = 51/654 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I  ++G+YV                 CPFHDEKTPSF    S+G 
Sbjct: 10  RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120
           +YCF C   GD +SF+  +   +F+E+VQRLA   GV L ++D      E  ++  ++  
Sbjct: 66  FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A +FF   +     +    ++  RG    A   F +GYAP   + LR+HL  KGF+ 
Sbjct: 126 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           + +IE+GL+          D F+ R+++PI+ S   V+ FG R +   +    KY+N+PE
Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K   LY    A   + K           S  ++VEGY DV++   +G+   V++ 
Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290

Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  +   RL+ +L          ++  FDGD  G +AA K            ++    
Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP   +   G  A  +L+   +PL   + +        +  D R          
Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVSQFDLDRADGRVAAIRAAAPL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  I+DQ L   Y + +   +         E S   R  +   +      P  +   S +
Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSHTRRQHRSEPQLTIVPPPEPQ-QGSGI 466

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                +      E   L   + HP +  E++ ++      +   Q ++  + +       
Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              +   +++ E      +KQL+       +          +  + Y +A A   R   +
Sbjct: 522 RGQDRWTEKVSEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 574

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +     ++ ++ +     + +    + S L  +   + +     ++I   G  S
Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA-LRK-----SLIVAGGAAS 622


>gi|289423790|ref|ZP_06425585.1| DNA primase [Peptostreptococcus anaerobius 653-L]
 gi|289155829|gb|EFD04499.1| DNA primase [Peptostreptococcus anaerobius 653-L]
          Length = 612

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 162/625 (25%), Positives = 279/625 (44%), Gaps = 28/625 (4%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           +D I ++     I+++I  Y+      +N     Y   CPFH EKTPSF  N SK  + C
Sbjct: 5   KDIIDEVKARNDIADVISDYLKLTPSGSN-----YKGLCPFHHEKTPSFSVNTSKQIFKC 59

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRLIEV 123
           F C   GD ++F+       F++SV+ LA  AG+      D K +++         +   
Sbjct: 60  FGCGAGGDVINFIMRKENLDFMDSVKFLANRAGIEFNTNLDEKTKQRLAKIKRYQEMHTE 119

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
           A  +F+  L N  +     Y  +RG+D   I+ F LGY+PDS  SL+ +L  KG+S E++
Sbjct: 120 AARYFYSQLDNPNNPA-LKYFLKRGLDVKTIKRFGLGYSPDSWDSLKNYLVSKGYSLEEL 178

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
            +AGL+    N    YD+FRNR++FPI   +  VI FGGR L      KYLNSP++ LF+
Sbjct: 179 FDAGLVSQNKNKTNYYDKFRNRVMFPIFDYKSNVIGFGGRVL-DDSLPKYLNSPDSELFN 237

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K  NLY    A   +               +ILVEGYMD++SL Q G++NVV++LGTALT
Sbjct: 238 KRNNLYGLNYARKSI----------GHDKTLILVEGYMDLISLHQFGIKNVVATLGTALT 287

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           + Q  LL + +  ++L +D DD G+ A+ +AI +       G +   + L   +DPD F+
Sbjct: 288 DNQAVLLKRFADNMILSYDSDDAGVNASLRAIGI---LEKQGIKPKVLNLGSYKDPDEFV 344

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R  G  A    I  ++           ++ + +   +           +  IK    + Y
Sbjct: 345 RANGMNAMLDRIDTAIEANQFRLDSLRKSYNMDDKKDVIAYIKESSKIVKRIKSPIEKDY 404

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y + +            +E     R    N   RD K P+   +        +       
Sbjct: 405 YIEYLSSITGTNSDIIRSEFGMTFR----NYPRRDDKKPANTFLHRPQKVSVVEDGSKFI 460

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  L+  +++   +      +++   + +   +K++  + +   +      +    +L +
Sbjct: 461 ELNLIRAMLDSRLVRDTVPLKISLEDFSDENSKKIYEKVSNVDNKGIKVSKDG-SIKLED 519

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
               ++     +++    L     + N VD         +  KR   L +Q+E +E +  
Sbjct: 520 VYSDDIDIDYIKKLGRVKLNVEFNDLNEVDKIINSFMRESSEKRLEELFKQQEILENR-- 577

Query: 604 QVTAKGEAEKTAILISILHEVHIQI 628
           + T K  +++   +   + E+ ++I
Sbjct: 578 RKTIKNNSQEAKEVDLEIMEIALKI 602


>gi|332994457|gb|AEF04512.1| DNA primase [Alteromonas sp. SN2]
          Length = 593

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 163/628 (25%), Positives = 283/628 (45%), Gaps = 45/628 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PRDFI DLL    + +++   V   +   N     Y ACCPFH+EK+PSF  +  K F
Sbjct: 4   KIPRDFIDDLLSRTDVVDIVDSRVKLKKAGKN-----YQACCPFHNEKSPSFTVSQEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK----IEKKEKIQTDL 117
           Y+CF C   G+ +SFL       F+E+++ LA + G+ +P          E+K++ Q D 
Sbjct: 59  YHCFGCGAHGNAISFLMEFDRLEFVEAIEELAKLYGLEVPREKGHLPVVSEEKKQQQQDD 118

Query: 118 IRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             L+E    FF H LK N    +   YL  RG+    ++ +++GYAPDS  +L +   + 
Sbjct: 119 YSLMEQVVRFFQHQLKQNENSGKAIDYLKSRGLSGDIVKQWEIGYAPDSWDALLKTFGKD 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
               +++I+  L+   D     YD FR+R++FPIR  RG+V+ FGGR L +    KYLNS
Sbjct: 179 QARVKQLIDLKLVNQNDQGRR-YDFFRDRIMFPIRDKRGRVVGFGGRVL-EDGGPKYLNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +FHKG  L+ F+ A    ++             +++VEGYMDV++L Q G+    +
Sbjct: 237 PETRIFHKGSELFGFYQARQQNRQL----------DAVLIVEGYMDVVALSQFGINQATA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +P IV C+DGD  G  AA++A++  L  L  G R++F+ L  G
Sbjct: 287 ALGTATTAEHMQMLVRATPHIVCCYDGDRAGREAAWRALENALPALKDGVRLSFLFLPDG 346

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD+ +R  GK AF +++  ++PL    ++ + +     TP+ +  L       I  ++
Sbjct: 347 EDPDTMVRKIGKDAFMEMLDNAMPLSRFFFENQLKTHKVGTPEGKIALRKAAMPLIESVQ 406

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               +    + +     +  +  + +      +      +   +    +   S L     
Sbjct: 407 GDDQKQMLLEELAKHTGEYDRFKLQQDISKANHASSKPAYSANRNQVGKARLSPL----- 461

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                     L+  L++ P++       + +     +     L   +     +       
Sbjct: 462 --------RMLIRLLLDSPSLATRCDDVQPSVFEGSDATGMDLLLDIHRYCAQYPQATTA 513

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ +          + +L  Q                D  + Y  + A    +   SR +
Sbjct: 514 QLVENFRNHPHSSTIAKLLLQEHLVK---------DEDAERVYSDSFARLLDWHFDSRIE 564

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHE 623
             I +   Q   + E E+  +L+    +
Sbjct: 565 TLISRSRVQPLTQVEKEELNLLMKERQK 592


>gi|325290509|ref|YP_004266690.1| DNA primase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965910|gb|ADY56689.1| DNA primase [Syntrophobotulus glycolicus DSM 8271]
          Length = 610

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 169/650 (26%), Positives = 298/650 (45%), Gaps = 60/650 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               DFI+++     I  +I +YV   R   N     Y   CPFH EKTPSF+ N  +  
Sbjct: 4   RISEDFIEEVRQRADIVEVISEYVVLKRAGKN-----YQGLCPFHSEKTPSFNVNPERQM 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           +YCF CH  G+  SFL       F+E++Q +A   G+ LP     P+  KKE ++     
Sbjct: 59  FYCFGCHTGGNVFSFLMKKNNLPFLEALQEVARRVGMELPERELSPEERKKESMRLRWQE 118

Query: 120 LIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + E++  +F   L+     +R   Y D R ID   +  F+LGY  DS   L   + + G 
Sbjct: 119 IHELSAGYFQKMLEERPEGERGRRYFDGRNIDRDTMRKFRLGYTADSWDGLINEMAKHGI 178

Query: 179 SEEKIIEAGLLIDGDN---SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +  ++ EAGL +  DN     + YDRFR R+IFPI    G+ I FGGR L      KYLN
Sbjct: 179 TPGELSEAGLSVKKDNGDGRISFYDRFRGRVIFPILDVHGKPIGFGGRVL-DDSLPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET  FHKG+NLY    A   ++           + + +L+EGYMDV+++ + G+ N V
Sbjct: 238 SPETQFFHKGRNLYGIQTASRGIR----------EAGYSVLLEGYMDVIAVQKVGLFNAV 287

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +SLGTALT  Q R+L + S R++LC+D D+ G++AA++A ++    +  G  V  + L  
Sbjct: 288 ASLGTALTRDQARILKRYSSRVILCYDSDEAGVQAAFRAGEI---LINEGLNVQVLKLKG 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            +DPD +++ + K  F + + +SL  ++  ++    +    T   +AEL   +   I  I
Sbjct: 345 AKDPDEYLQGHSKEEFLQELQKSLSYIEFKYEMLVADAVPETITAKAELIRRMAPDILRI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ------- 468
           K    R  Y++ +   L    +    E  G  +   +N  +++     Q +         
Sbjct: 405 KSAAEREGYARFLSLELGLTLEAVKEEIGGIDQKRLENKGYQEIFSQKQDISPHISNTIS 464

Query: 469 ---SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
              +  ++  ++      E  LL  ++N P +  +  +EL +  +   E + ++  +   
Sbjct: 465 VATNQFIENTIANGAYRAEQILLRLVLNDPDVKNKVQEELGNEFWCLEEHKYIFEAV--- 521

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
                   P  ++          L+++   ++ +  +     E  + D      ++    
Sbjct: 522 --------PANLNVPAANEDLYALVQKRLAELYELNIDIEKAEFLLKDCINAICESQN-- 571

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                  +Q ++++ ++  +   G+A     ++  + E      +++S E
Sbjct: 572 ------KKQIQDLQVKMIHLENYGDAAGALAVLREIQE------RLKSGE 609


>gi|223041545|ref|ZP_03611746.1| DNA primase [Actinobacillus minor 202]
 gi|223017640|gb|EEF16050.1| DNA primase [Actinobacillus minor 202]
          Length = 581

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 179/614 (29%), Positives = 288/614 (46%), Gaps = 55/614 (8%)

Query: 1   MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M    PR FI DL+    I  LI   V   +        +Y ACCPFH EKTPSF  + S
Sbjct: 1   MKGTIPRSFIDDLIARTDIVELINHRVKLKKAGR-----EYHACCPFHHEKTPSFSVSPS 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------K 112
           K FY+CF C   G+ +SFL       F E+++ LAA+ G+ +P  + +           K
Sbjct: 56  KQFYHCFGCGAHGNVISFLMEYDKLEFPEAIEELAALHGLEVPRENLRQSDSRSPQVGYK 115

Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172
            + DL  L+   T F+  +L+     +   YL +RG+ S  I  F++G+AP++  ++   
Sbjct: 116 AKRDLYGLLSEITQFYQQNLQQDIPSQS--YLQQRGLSSEIIARFEIGFAPNAYDAVLRK 173

Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
             +     +K+ + G+L +   S   YD+FRNR++FPIR  RG+VIAFGGR +   E  K
Sbjct: 174 FGKNPEEIQKLRDTGMLSES-ESGRIYDKFRNRIMFPIRDKRGRVIAFGGRVM-GDERPK 231

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPE+  +HKG  LY  + AL              +  ++ +VEGYMDV++L Q GV+
Sbjct: 232 YLNSPESATYHKGNELYGLYQALQ----------VDENPQYLFVVEGYMDVVALAQFGVE 281

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           N V+SLGTA T  Q++ +++++ +I+ C+DGD  G  AA++A +  L +L  G ++ F+ 
Sbjct: 282 NAVASLGTATTGEQIQQMFRVTEQIICCYDGDRAGRDAAWRAFENALPYLYDGRQLKFIF 341

Query: 353 LSRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           L  GEDPD+F+R  GK+ FE+ L   +  L D L+         ++ + +++L       
Sbjct: 342 LPDGEDPDTFVRSQGKSGFEQYLQENAKSLSDFLFDSLLVQVDLSSKEGKSKLASLAIPL 401

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           IN I  + LR Y    +  +L  L    +                          +QS  
Sbjct: 402 INRIPGEMLRVYLRNILGQKLGILDPSQLEALL-------------------PNRLQSKQ 442

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
              K           L+  L+ +P  ++     L  ++  +     L+  L     EQ  
Sbjct: 443 DAPKAQGIKRTPMRLLIALLLQNPDFVKHVPD-LTPLKELDEAGFDLFVELVQVCREQVG 501

Query: 532 FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANI---VDVRQGYQQALALY 585
                + +   +     +L++L   D  V D  L     E        + +   + L   
Sbjct: 502 VSMGALLEHWRDTPNYTILERLAGWDHLVSDENLEKEFIETLSFLYTKLVEKRVEVLIAK 561

Query: 586 KRFRLLS-RQKEEI 598
           +R + LS  +K+E+
Sbjct: 562 ERTQGLSDEEKQEL 575


>gi|145640510|ref|ZP_01796094.1| DNA primase [Haemophilus influenzae R3021]
 gi|145275096|gb|EDK14958.1| DNA primase [Haemophilus influenzae 22.4-21]
          Length = 593

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 173/634 (27%), Positives = 290/634 (45%), Gaps = 55/634 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       FIE+++ LAA+AG+ +P         K +   + + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L++    F+ + L    + +   YL +RG+    IE F++G+ P++  ++       
Sbjct: 119 LYELMQEIAKFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+IE G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLNS
Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PETI +HKGK LY  + AL             +    +++VEGYMDV++L Q GV   V+
Sbjct: 235 PETITYHKGKELYGLYEALQA----------NDEPKQLLVVEGYMDVVALAQFGVDYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T  Q++L+++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD++IR YGK  FE+ I  +  L + ++   +    F+T + R +L       I+ I 
Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR      +  +L    Q  +              +        +  M         
Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     ++  L+ +P +++   +             ++   L +   +++     +
Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +      +   L+ L                +  D+   + Q      R   +   + 
Sbjct: 507 ILEYFRNTSYSNPLEILATWDHL---------LDESDIINAFSQ----NYRRLNIQAIER 553

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +IE  IA+   +G   +   ++  L     Q  +
Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587


>gi|314968039|gb|EFT12138.1| DNA primase [Propionibacterium acnes HL037PA1]
          Length = 660

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 141/635 (22%), Positives = 252/635 (39%), Gaps = 45/635 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I  ++G+YV                 CPFHDEKTPSF    S+G 
Sbjct: 10  RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120
           +YCF C   GD +SF+  +   +F+E+VQRLA   GV L ++D      E  ++  ++  
Sbjct: 66  FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A +FF   +     +    ++  RG    A   F +GYAP   + LR+HL  KGF+ 
Sbjct: 126 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           + +IE+GL+          D F+ R+++PI+ S   V+ FG R +   +    KY+N+PE
Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K   LY    A   + K           S  ++VEGY DV++   +G+   V++ 
Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290

Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  +   RL+ +L          ++  FDGD  G +AA K            ++    
Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP   +   G  A  +L+   +PL   + +        +  D R          
Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVSQFDLDRADGRVAAIRAAAPL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  I+DQ L   Y + +   +         E S   R  +   +      P  +   S +
Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSHTRRQHRSEPQLTIVPPPEPQ-QGSGI 466

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                +      E   L   + HP +  E++ ++      +   Q ++  + +       
Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              +   +++ E      +KQL+       +          +  + Y +A A   R   +
Sbjct: 522 RGQDRWTEKVSEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 574

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           +     ++ ++ +     + +    + S L  +  
Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA 609


>gi|167566504|ref|ZP_02359420.1| DNA primase [Burkholderia oklahomensis EO147]
          Length = 625

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 173/657 (26%), Positives = 276/657 (42%), Gaps = 66/657 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--------------KIE 108
           +CF C   G  + FL    G +F E+VQ LA  AG+ +P                     
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSAGLTVPHEPSPMRGGGGSPGDGYAPPA 116

Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY- 167
             + + T L  +++ A D++   L+         YL  RG+       F LGYAPD    
Sbjct: 117 ASKAVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQN 174

Query: 168 --SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
             +  +  R     +  ++      D +  A  YDRFR R++FPIR+ +GQVI FGGR L
Sbjct: 175 LEAAFDDYRHDSLVDAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVL 234

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
             GE  KYLNSPET LF+KG  LY  F A   ++             + ++VEGYMDV++
Sbjct: 235 DGGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------DHKYALVVEGYMDVVA 283

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           L Q G  N V++LGTA T   ++ L + +  +V  FDGD  G RAA +A++  L H    
Sbjct: 284 LAQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDSAGRRAARRALEACLPHAADN 343

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             + F+ L    DPDS++R +G  AF + +  ++PL   L    T  +  + P+ RA+  
Sbjct: 344 RTIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKAL 403

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              K  +  +    LR        +RLQ  F +         R                 
Sbjct: 404 FDAKPMLQALPANALRAQIMHMFAERLQIPFDEVAALVEVDARIA--------------- 448

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                       ++ +  E   L  L+ HP I      E            +L+  +   
Sbjct: 449 APARQAPARSERRRVTDNEKRALRNLVMHPRIAATLDDESLATLRALPRNGELFDEVIGH 508

Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577
                       L + +        + E+ +++   D  VRD    +  ++     +R+ 
Sbjct: 509 ARALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDVAQEGLREQ 568

Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +      QA  L  R+     +   + K+     + GE  +   L   L ++  ++
Sbjct: 569 ERIAGEELQAAVLKMRYDACRDRLNSLSKR--SAPSSGELAEIKDLHQNLADMKRRL 623


>gi|314987789|gb|EFT31880.1| DNA primase [Propionibacterium acnes HL005PA2]
          Length = 640

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 141/635 (22%), Positives = 252/635 (39%), Gaps = 45/635 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I  ++G+YV                 CPFHDEKTPSF    S+G 
Sbjct: 10  RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120
           +YCF C   GD +SF+  +   +F+E+VQRLA   GV L ++D      E  ++  ++  
Sbjct: 66  FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A +FF   +     +    ++  RG    A   F +GYAP   + LR+HL  KGF+ 
Sbjct: 126 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           + +IE+GL+          D F+ R+++PI+ S   V+ FG R +   +    KY+N+PE
Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K   LY    A   + K           S  ++VEGY DV++   +G+   V++ 
Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290

Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  +   RL+ +L          ++  FDGD  G +AA K            ++    
Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP   +   G  A  +L+   +PL   + +        +  D R          
Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVSQFDLDRADGRVAAIRAAAPL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  I+DQ L   Y + +   +         E S   R  +   +      P  +   S +
Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSHTRRQHRSEPQLTIVPPPEPQ-QGSGI 466

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                +      E   L   + HP +  E++ ++      +   Q ++  + +       
Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              +   +++ E      +KQL+       +          +  + Y +A A   R   +
Sbjct: 522 RGQDRWTEKVSEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 574

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           +     ++ ++ +     + +    + S L  +  
Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA 609


>gi|254672480|emb|CBA05944.1| DNA primase [Neisseria meningitidis alpha275]
          Length = 590

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 181/608 (29%), Positives = 294/608 (48%), Gaps = 42/608 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK   +     YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETAAAAADFYAQQLK--FNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF+KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFNKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++  + NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGINLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  +    
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + ++ R    +       E +  + + G ++ L   K  ++ + ++
Sbjct: 507 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 566

Query: 596 EEIEKQIA 603
           + ++  + 
Sbjct: 567 KSLQSGLN 574


>gi|78063052|ref|YP_372960.1| DNA primase [Burkholderia sp. 383]
 gi|77970937|gb|ABB12316.1| DNA primase [Burkholderia sp. 383]
          Length = 638

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 173/654 (26%), Positives = 278/654 (42%), Gaps = 63/654 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 18  IPHSFLQDLLNRVDIVDVVGKYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 72

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111
           +CF C   G  + FL    G +F E+VQ LA   G+ +P             D      +
Sbjct: 73  HCFGCGAHGTAIGFLMEHAGLTFPEAVQDLAQSVGLTVPHEPSMRGGGGGGGDYPAPVSK 132

Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---S 168
            + T L   +  A D++   L+         YL  RG+       F LGYAPD      +
Sbjct: 133 SVATALSDAMTAACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEA 190

Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
                R +   E  ++      D   +A  YDRFR R++FPIR+ +GQVI FGGR L  G
Sbjct: 191 AFPDYRDESLVESGLVIVSEKTDAQGAARRYDRFRERIMFPIRNVKGQVIGFGGRVLGSG 250

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
           E  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L Q
Sbjct: 251 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALAQ 299

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
            G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A++  L H      +
Sbjct: 300 LGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAGDNRTI 359

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
            F+ L    DPDS++R +G+ AF + +  ++PL   L       ++ + P+ RA+     
Sbjct: 360 RFLFLPAEHDPDSYVREFGEEAFSQQVERAMPLSQFLLNEAISGKALDQPEGRAKALFDA 419

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           K  +  +    LR        DRL   F++         R      +             
Sbjct: 420 KPLLQALPANALRAQIMHMFADRLDIPFEEVAGLSDVDTRIAAPPRQ------------- 466

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                    ++ +  E   L TL+ HP I  +   E          + +L++ +      
Sbjct: 467 --APPRSERRRVTDSEKRALRTLVMHPRIASQLDDEQLATLRALPRIGELFAEVVDHARA 524

Query: 529 QKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ- 579
                    L + +        + E+ +++   D  VRD  L +   E      R+  + 
Sbjct: 525 LGDGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQERI 584

Query: 580 -----QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                QA  L  R+     + + + +Q        E  +   L     ++  ++
Sbjct: 585 AGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 636


>gi|309972317|gb|ADO95518.1| DNA primase [Haemophilus influenzae R2846]
          Length = 593

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 172/634 (27%), Positives = 289/634 (45%), Gaps = 55/634 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       FIE+++ LAA+AG+ +P         K +   + + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L++    F+ + L    + +   YL +RG+    IE F++G+ P++  ++       
Sbjct: 119 LYELMQEIATFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+IE G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLNS
Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PETI +HKGK LY  + AL             +    +++VEGYMDV++L Q GV   V+
Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T  Q++L+++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD++IR YGK  FE+ I  +  L + ++   +    F+T +   +L       I+ I 
Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGCGKLVALAAPLIHQIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR      +  +L    Q  +              +        +  M         
Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     ++  L+ +P +++   +             ++   L +   +++     +
Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +      +   L+ L                +  D+   + Q      R   +   + 
Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +IE  IA+   +G   +   ++  L     Q  +
Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587


>gi|325918191|ref|ZP_08180340.1| DNA primase [Xanthomonas vesicatoria ATCC 35937]
 gi|325535598|gb|EGD07445.1| DNA primase [Xanthomonas vesicatoria ATCC 35937]
          Length = 582

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 170/631 (26%), Positives = 274/631 (43%), Gaps = 59/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    I  ++G  V   R+       +Y A CPFHDE++ SF  + +K F
Sbjct: 3   RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120
           Y+CF C   G  +SFL       F+++V  LA  AG+ +P    +   +++    +L   
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEIPRDTQQRTPQQQDDSRELYSA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E AT FF   L+ +   R   YLD RG+D+     F++GYAPD   +L++ L       
Sbjct: 118 LEAATKFFQRQLEGS--TRAAEYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235
             +  AGL    D     YD+FR+R++FPI   RG+VIAFGGR +      +    KYLN
Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LFHKG+ LY  +      QK  R          +I+VEGYMDV+SL Q GV   V
Sbjct: 235 SPETTLFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T     LL++ +P +  CFDGD+ G +A ++A++ VL  +  G +  F+ L  
Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPD+ +R  G  AF++ + ++ PL    +   +   + +T D +A L    K  +  I
Sbjct: 345 GEDPDTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERAKPMLAQI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +        Q +                      + + + R          + SLV+  
Sbjct: 405 PEGAFGDLMKQELARMTG---------VGASMSAQQSSPKTRPPVRMGAPTQKRSLVRAS 455

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                       +  L+  P++      +          ++ L   L +   ++      
Sbjct: 456 ------------IAILLQQPSLAMSLEGDHDFSGLRLPGIELLME-LLALVRQRPEISTG 502

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + +   ER     L++L  Q                         +      +LL ++ 
Sbjct: 503 ALLEHFAEREELVALQKLAAQELPGD----------EHSWAIELHDVVAQLDKQLLRQRV 552

Query: 596 EEIEKQIAQVTAKGEAEKTA--ILISILHEV 624
           EE++ +  +       +K     L+  L  +
Sbjct: 553 EELQAK-QRAQGLDNTDKYEMRELLKALAAL 582


>gi|298369313|ref|ZP_06980631.1| DNA primase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283316|gb|EFI24803.1| DNA primase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 591

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 178/602 (29%), Positives = 289/602 (48%), Gaps = 45/602 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P +FI +LL  + + ++I + V   +   N     Y ACCPFH EKTPSF  + SK FY
Sbjct: 2   IPSEFIDELLAKVDVVDIIDEQVPLKKSGAN-----YMACCPFHKEKTPSFSVSPSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQYLADRVGMTVPQVRGRNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L   +  A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETVAAAADFYAQQLKFNPAAKE--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    ++++G++I   N    YDRFR+R++FPIR  RGQVI FGGR L   +  KYLNS
Sbjct: 173 PYPNTALVDSGMVI--ANEGKHYDRFRHRIMFPIRDPRGQVIGFGGRVLDNSKP-KYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++ + R          I++VEGYMDV++L Q G+   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAIKDAGR----------ILVVEGYMDVVALSQFGIGYSVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L  G  ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQTDDIYFCFDGDSAGRKAAWRALENALPQLKDGKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS++R YGK  FE  L+ +S PL +  W   ++  + N  + +AEL       +  I
Sbjct: 340 HDPDSYVRAYGKAQFEDALLHQSKPLSEYFWDALSDGLNLNMQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L +   Q + + +                  K++ + +  K P+  + Q  ++   
Sbjct: 400 TAPALGFLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKSYKLPAISVKQPVML--- 454

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                +L +  +   LIN PA       +L +      +   L +         +     
Sbjct: 455 -----TLVQRQIRSLLIN-PAWASYI--DLPEYLPLTGDFACLANLAEMIKSHPQPPSSA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSAT-TEANIVDVRQGYQQALALYK--RFRLLS 592
           +I + +    +   L Q+ +   ++     +  E +    + G ++ L   K  +  LL 
Sbjct: 507 QILEHMRGSPYETALNQIFQSALNSSDEMESGNEEDCESFKIGMKKLLNELKYSQIELLK 566

Query: 593 RQ 594
           ++
Sbjct: 567 QK 568


>gi|145630290|ref|ZP_01786071.1| DNA primase [Haemophilus influenzae R3021]
 gi|144984025|gb|EDJ91462.1| DNA primase [Haemophilus influenzae R3021]
          Length = 593

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 170/634 (26%), Positives = 289/634 (45%), Gaps = 55/634 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       F+E+++ LAA+AG+ +P         K +   + + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFVEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L++    F+ + L    + +   YL +RG+    IE F++G+ P++  ++       
Sbjct: 119 LYELMQEIAKFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+IE G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLNS
Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PETI +HKGK LY  + AL             +    +++VEGYMDV++L Q GV   V+
Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T  Q++L+++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD++IR YGK  FE+ I  +  L + ++   +    F++ + R +L       I+ I 
Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSSKEGRGKLVALAAPLIHQIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR      +  +L    Q  +              +        +  M         
Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPM--------- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     ++  L+ +P +++   +             ++   L +   +++     +
Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +      +   L+ L                +  D+   + Q        + + R  E
Sbjct: 507 ILEYFRNTSYSNPLEILATWDHL---------LDESDIINAFSQNYR-RLNIQAIERDIE 556

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            +   IA+   +G   +   ++  L     Q  +
Sbjct: 557 IL---IAKERTEGLTNEEKTVLVHLLAGKEQQKK 587


>gi|327330174|gb|EGE71923.1| DNA primase [Propionibacterium acnes HL097PA1]
          Length = 623

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 144/654 (22%), Positives = 260/654 (39%), Gaps = 51/654 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I  ++G+YV                 CPFHDEKTPSF    S+G 
Sbjct: 10  RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120
           +YCF C   GD +SF+  +   +F+E+VQRLA   GV L ++D      E  ++  ++  
Sbjct: 66  FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A +FF   +     +    ++  RG    A   F +GYAP   + LR+HL  KGF+ 
Sbjct: 126 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           + +IE+GL+          D F+ R+++PI+ S   V+ FG R +   +    KY+N+PE
Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K   LY    A   + K           S  ++VEGY DV++   +G+   V++ 
Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290

Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  +   RL+ +L          ++  FDGD  G +AA K            ++    
Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP   +   G  A  +L+   +PL   + ++       +  D R          
Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMEKTVSQFDLDRADGRVAAIRAAAPL 407

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  I+DQ L   Y + +   +         E S   R  +   +      P  +   S +
Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSHTRRQHRSEPQLTIVPPPEPQ-QGSGI 466

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                +      E   L   + HP +  E++ ++      +   Q ++  + +       
Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              +   +++ E      +KQL+       +          +  + Y +A A   R   +
Sbjct: 522 RGQDRWTEKVSEATPDSQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 574

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +     ++ ++ +     + +    + S L  +   + +     ++I   G  S
Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA-LRK-----SLIVAGGAAS 622


>gi|183597879|ref|ZP_02959372.1| hypothetical protein PROSTU_01214 [Providencia stuartii ATCC 25827]
 gi|188022640|gb|EDU60680.1| hypothetical protein PROSTU_01214 [Providencia stuartii ATCC 25827]
          Length = 581

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 163/595 (27%), Positives = 274/595 (46%), Gaps = 41/595 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +L+   V   ++  N     + ACCPFH+EKTPSF  N  + F
Sbjct: 4   RIPRSFINDLLARTDIIDLVDAKVPLKKQGKN-----HHACCPFHNEKTPSFTVNSERQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           YYCF C   G+ + FL       F+E+++ L+A+ G+ +P        + +   + +L +
Sbjct: 59  YYCFGCGAHGNAIDFLMNYDKLDFVEAIEELSALHGLDVPYETGTGTSQIELHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E    F+H +L +    +   YL +RG+ +  IE F +G+AP    +L +       S
Sbjct: 119 LMEKINHFYHAALNHPSASKAKDYLSQRGLSADVIEHFSIGFAPVGWDNLLKKFAVNPES 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            +++ +AG+L+  ++S  +YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RKQLDDAGMLV-TNDSGRTYDRFRERVMFPIRDRRGRVIAFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ L+  + A  +           +    +++VEGYMDV++L Q G++  V+SLG
Sbjct: 237 DIFHKGRQLFGLYEATQH----------NSELDKLLVVEGYMDVVALAQYGIRYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTSEHIQLLYRSTDTVICCYDGDRAGREAAWRALENALPYLTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS +R  GK AFE  + ++  L   L+          T + RA+        I  I  + 
Sbjct: 347 DSLVRKEGKEAFELRMNDAQTLSSFLFDSLVPQVDLKTQEGRAKFSKLAIPLIKQIPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y +Q + + +       +            N +    K  +                
Sbjct: 407 LRLYMAQELGNFIGIPDISQVLAMIDRENAEPVNYQAPKLKPTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P+  +               L  L+  L             ++ +
Sbjct: 452 -----RILIALLVQNPSFSEFVPSLEGIAHIQMPGL-SLFQELVDVCRSTPGMTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
              +  F   L++L     D  +     +     +   +  AL     + +   +
Sbjct: 506 LYRDNKFASQLEKLATW-NDIEIEEIAEKTFKDALNHLFNSALDERFDYLIAKER 559


>gi|238022115|ref|ZP_04602541.1| hypothetical protein GCWU000324_02021 [Kingella oralis ATCC 51147]
 gi|237866729|gb|EEP67771.1| hypothetical protein GCWU000324_02021 [Kingella oralis ATCC 51147]
          Length = 594

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 169/634 (26%), Positives = 278/634 (43%), Gaps = 52/634 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI DLL    I ++I  YV   +   N     Y ACCPFH EK+PSF  + SK FY
Sbjct: 2   IPSSFIDDLLAKTDIVDIIDHYVPLKKSGAN-----YMACCPFHKEKSPSFSVSPSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-------KEKIQT 115
           +CF C   G  + F+    G +F E+VQ+LA   G+ +P       +       +++ Q 
Sbjct: 57  HCFGCGAHGSAIGFIMEHQGLTFPEAVQQLADRVGMSVPHDSNTQPENAAERAARKQQQQ 116

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L   ++ A  F+   L          Y   RG+    I  + +GYAPD    L +    
Sbjct: 117 TLETAVQAAATFYAQQL--PLSAAAQAYATGRGLSPEIIARYGIGYAPDGWTPLAQVF-- 172

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           + +   ++I +G++ID D     YDRFR+RL+FPIR+  G +I FGGR L      KYLN
Sbjct: 173 QPYPNGELIASGMVIDQDG--KQYDRFRHRLMFPIRNISGSIIGFGGRVL-DDSKPKYLN 229

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP+T LF KGKNLY  + A   ++ + R          I++VEGYMD ++L Q G+   V
Sbjct: 230 SPDTPLFDKGKNLYGLYEARQAIKDAGR----------ILVVEGYMDTVALAQYGIGYAV 279

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T   +++L++ +  I  CFDGD  G +AA++A++  L  L  G  ++F+ L  
Sbjct: 280 AALGTATTAEHIKILFRQTDNIYFCFDGDAAGQKAAWRALENALPQLKDGKSLHFLFLPA 339

Query: 356 GEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
             DPDSF+R +GK  FE+ L+ +S PL    W   T      + + +AEL       +  
Sbjct: 340 EHDPDSFVRQFGKERFEEALLHQSRPLSQYFWDALTAGLDLTSQEGKAELVKRAAPHLAQ 399

Query: 415 I-KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           I +   L Y   Q + ++                      A+       S R  +++ + 
Sbjct: 400 ITQAPTLAYLLKQNLSEQTGIDPTNLAYLMGQAAPQRHVAAKRYTLPRESFRQPETTTLV 459

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +            + TL+ +P   +     + D      ++  L   L   +       
Sbjct: 460 QRQ-----------IRTLLLNPQWAEHV--AIPDYLPAGGDIACLL-ALAHSYRSHPSMT 505

Query: 534 PEEIHQRLCERGFGELLKQLDRQVR-DAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             +  +      F   +  + R    +    + ++     + + G  + +   K     +
Sbjct: 506 AAQAIEHFRATPFATTIDHIFRHALQNQEDLTDSSPEKQQEFQDGIAKLITELK-----N 560

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILIS-ILHEVH 625
            Q  +++ ++ Q     +  K   L+   L  + 
Sbjct: 561 HQISQLKHRLTQPDISPDERKRLSLLIVQLLAIK 594


>gi|326779515|ref|ZP_08238780.1| DNA primase [Streptomyces cf. griseus XylebKG-1]
 gi|326659848|gb|EGE44694.1| DNA primase [Streptomyces cf. griseus XylebKG-1]
          Length = 643

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 144/668 (21%), Positives = 266/668 (39%), Gaps = 62/668 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  +  KG 
Sbjct: 4   RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPGKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD ++F+  +   SF E+V+RLAA AG+ L   +       +   +  LI 
Sbjct: 60  FHCFGCQEGGDTIAFVMKIDHLSFSETVERLAAKAGITLRYEEGGYNPSHQRGERIRLIE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             + A +F+  +L++   +    +L ERG D  A   F++GY+P     L  +LR KGFS
Sbjct: 120 AHQAAAEFYVRALESPEAEIGRAFLAERGFDQDAAAHFRVGYSPAGWDHLTRYLRGKGFS 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           ++++I +GL    D      DRFR RL++PI  + G ++ FG R L   ++  KYLN+PE
Sbjct: 180 DKELITSGL--SQDGRRGPIDRFRGRLMWPISDTAGDIVGFGARKLRDDDNGPKYLNTPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K + LY    A   + K+ R           ++VEGY DV++   AGV   +++ 
Sbjct: 238 TPIYKKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIATC 287

Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           GTA     +++L +L       R++  FDGD  G +AA +A +               + 
Sbjct: 288 GTAFGNDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIA 344

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  +   L+    PL +   ++        TP  RA         + 
Sbjct: 345 PDGMDPCDLRLAKGDDSVRDLVEPRTPLFEFALRQIVGRYDLETPAGRAAALDEAAAVVA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-- 471
            IK   ++   +  +   +  L Q+++        +W ++          +   Q     
Sbjct: 405 KIKTSSVQREVAVQLAGLVGILDQEFVVHRVAQLAHWARSKGGDHGDRGGRGGPQGRGPR 464

Query: 472 -----------------VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
                                L       E  LL   +  PA++   +       +    
Sbjct: 465 GGAPQQPAPAPAPGFSGPALNLRSPAHRTERELLKLALQKPALVSPAFDAYGVDEFTAPP 524

Query: 515 LQKLWSFLFSDFVEQKYFLPE-----EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
              +   +      ++           +     +     L+ +L  +V    +       
Sbjct: 525 YAAVRQCIEEAGGAEQGIADNREYLVAVMDAAPDNTVRNLVTELAVEVFHGRI------- 577

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
               + + Y     ++ R R + R+ ++++  + ++ +    +  A   + +  +     
Sbjct: 578 ----IDETYAGMQLVHVRLRAVDRRIDDVQGSLVRLGSHVAPQDLAAAQNEVWVLQQYAQ 633

Query: 630 QIESQEAM 637
            + +  A 
Sbjct: 634 TLRAHGAA 641


>gi|182438859|ref|YP_001826578.1| DNA primase [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467375|dbj|BAG21895.1| putative DNA primase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 643

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 144/668 (21%), Positives = 266/668 (39%), Gaps = 62/668 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  +  KG 
Sbjct: 4   RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPGKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD ++F+  +   SF E+V+RLAA AG+ L   +       +   +  LI 
Sbjct: 60  FHCFGCQEGGDTIAFVMKIDHLSFSETVERLAAKAGITLRYEEGGYNPSHQRGERIRLIE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             + A +F+  +L++   +    +L ERG D  A   F++GY+P     L  +LR KGFS
Sbjct: 120 AHQAAAEFYVRALESPEAEIGRAFLAERGFDQDAAAHFRVGYSPAGWDHLTRYLRGKGFS 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           ++++I +GL    D      DRFR RL++PI  + G ++ FG R L   ++  KYLN+PE
Sbjct: 180 DKELITSGL--SQDGRRGPIDRFRGRLMWPISDTAGDIVGFGARKLRDDDNGPKYLNTPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K + LY    A   + K+ R           ++VEGY DV++   AGV   +++ 
Sbjct: 238 TPIYKKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIATC 287

Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           GTA     +++L +L       R++  FDGD  G +AA +A +               + 
Sbjct: 288 GTAFGNDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIA 344

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  +   L+    PL +   ++        TP  RA         + 
Sbjct: 345 PDGMDPCDLRLAKGDDSVRDLVEPRTPLFEFALRQIVGRYDLETPAGRAAALDEAAAVVA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-- 471
            IK   ++   +  +   +  L Q+++        +W ++          +   Q     
Sbjct: 405 KIKTSSVQREVAVQLAGLVGILDQEFVVHRVAQLAHWARSKGGDHGDRGGRGGPQGRGSR 464

Query: 472 -----------------VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
                                L       E  LL   +  PA++   +       +    
Sbjct: 465 GGAPQQPAPAPAPGFSGPALNLRSPAHRTERELLKLALQKPALVSPAFDAYGVDEFTAPP 524

Query: 515 LQKLWSFLFSDFVEQKYFLPE-----EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
              +   +      ++           +     +     L+ +L  +V    +       
Sbjct: 525 YAAVRQCIEEAGGAEQGIADNREYLVAVMDAAPDNTVRNLVTELAVEVFHGRI------- 577

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
               + + Y     ++ R R + R+ ++++  + ++ +    +  A   + +  +     
Sbjct: 578 ----IDETYAGMQLVHVRLRAVDRRIDDVQGSLVRLGSHVAPQDLAAAQNEVWVLQQYAQ 633

Query: 630 QIESQEAM 637
            + +  A 
Sbjct: 634 TLRAHGAA 641


>gi|332363115|gb|EGJ40902.1| DNA primase [Streptococcus sanguinis SK355]
          Length = 602

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 145/634 (22%), Positives = 269/634 (42%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKELISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL V        ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETVGNDRPRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    ++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAVATDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++         R  +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLRHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      + +        
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEASTQQSQPVVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +++HP ++  QY+   D  +D+ ELQ L+  L ++  E       
Sbjct: 468 RLSRLMKAENHIFHRMMHHP-LILNQYRLREDFFFDSEELQALYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|240112699|ref|ZP_04727189.1| DNA primase [Neisseria gonorrhoeae MS11]
 gi|254493554|ref|ZP_05106725.1| DNA primase [Neisseria gonorrhoeae 1291]
 gi|260440744|ref|ZP_05794560.1| DNA primase [Neisseria gonorrhoeae DGI2]
 gi|268594614|ref|ZP_06128781.1| DNA primase [Neisseria gonorrhoeae 35/02]
 gi|268597060|ref|ZP_06131227.1| DNA primase [Neisseria gonorrhoeae FA19]
 gi|268598760|ref|ZP_06132927.1| DNA primase [Neisseria gonorrhoeae MS11]
 gi|268601119|ref|ZP_06135286.1| DNA primase [Neisseria gonorrhoeae PID18]
 gi|268681917|ref|ZP_06148779.1| DNA primase [Neisseria gonorrhoeae PID332]
 gi|268684131|ref|ZP_06150993.1| DNA primase [Neisseria gonorrhoeae SK-92-679]
 gi|291044059|ref|ZP_06569775.1| DNA primase [Neisseria gonorrhoeae DGI2]
 gi|226512594|gb|EEH61939.1| DNA primase [Neisseria gonorrhoeae 1291]
 gi|268548003|gb|EEZ43421.1| DNA primase [Neisseria gonorrhoeae 35/02]
 gi|268550848|gb|EEZ45867.1| DNA primase [Neisseria gonorrhoeae FA19]
 gi|268582891|gb|EEZ47567.1| DNA primase [Neisseria gonorrhoeae MS11]
 gi|268585250|gb|EEZ49926.1| DNA primase [Neisseria gonorrhoeae PID18]
 gi|268622201|gb|EEZ54601.1| DNA primase [Neisseria gonorrhoeae PID332]
 gi|268624415|gb|EEZ56815.1| DNA primase [Neisseria gonorrhoeae SK-92-679]
 gi|291012522|gb|EFE04511.1| DNA primase [Neisseria gonorrhoeae DGI2]
          Length = 590

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 181/608 (29%), Positives = 291/608 (47%), Gaps = 42/608 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I  +I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVGIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLVQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  +    
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + ++ R    +       E +  + + G ++ L   K  ++ + ++
Sbjct: 507 QVLEHMRGSPYEETIDRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 566

Query: 596 EEIEKQIA 603
           + ++  + 
Sbjct: 567 KSLQSGLN 574


>gi|327461510|gb|EGF07841.1| DNA primase [Streptococcus sanguinis SK1]
          Length = 602

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 145/634 (22%), Positives = 269/634 (42%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL V     +  ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGIPLAVETAGNDRLRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    ++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAAASDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----KDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      + +        
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPTQQSQPVVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +I+HP ++  QY+   D  +D+ ELQ L+  L ++  E       
Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEKKRRME 602


>gi|301155441|emb|CBW14907.1| DNA primase [Haemophilus parainfluenzae T3T1]
          Length = 594

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 178/637 (27%), Positives = 295/637 (46%), Gaps = 57/637 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  ++ K F
Sbjct: 4   SIPRQFIDDLLTKSNIVDVINARVKLKKAGR-----DYQACCPFHHEKTPSFTVSEKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQT 115
           YYCF C  KG+ +SFL       F+E+V+ LAA AG+ +P      +         + + 
Sbjct: 59  YYCFGCGAKGNAISFLMDYDKLEFVEAVEELAASAGLEVPYEKRPNQFGNKPDVSYQTKR 118

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           +L  L++    F+   L    +     YL +RG+    I+ F++GY P++  ++     +
Sbjct: 119 NLYDLMQEIALFYQSQL--PLNIPAQSYLQQRGLSPEIIDRFQIGYVPNAMDTVLRQFGK 176

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
               ++K+ + G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLN
Sbjct: 177 NREEQKKLFDLGMLSRNDRG-NVYDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPETI +HKG  LY  + AL             +    +++VEGYMDV++L Q GV   V
Sbjct: 235 SPETITYHKGNELYGLYEALQI----------NDEPEKLLVVEGYMDVVALAQFGVNYAV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +SLGT+ T  Q++LL++ + +++ C+DGD  G  AA++A++  L +L  G ++ F+ L  
Sbjct: 285 ASLGTSTTSEQIQLLFRSTEQVICCYDGDRAGRDAAWRALENALPYLEDGRQIKFIFLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPD++IR YGK  FE+ I ++  L + L+   +    F+T + R +L       I  I
Sbjct: 345 GEDPDTYIRQYGKEKFEEYIDQAQSLTEFLFAHLSPQVDFSTQEGRGKLVALAAPLIRQI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               LR      +  +L    Q  +           +      QK   +  M        
Sbjct: 405 PGDMLRLSLRNMLAQKLGIFDQSQLESLIPNQIGKAEPKPKTPQKTIKKTPM-------- 456

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                      ++  L+ +  ++      +      +    +L   L +   E++     
Sbjct: 457 ---------RVVISLLLQNSQLVNRISD-VGLQALKHEAGYELLEKLTALCREREGITTG 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +I +   +  F + L+ L              +  + D+      A +   R   +   +
Sbjct: 507 QILEYFRDTEFSKPLEILASW-----------DHLLDDLE--IINAFSQNYRRLNIQAIE 553

Query: 596 EEIEKQIAQVTAKGEAEKTAILI-SILHEVHIQIHQI 631
            +IE  IA+  A+G  ++   ++ ++L     Q  Q+
Sbjct: 554 RDIEMLIAKERAEGLTDQERAILVNLLKGKEEQKKQL 590


>gi|327489366|gb|EGF21159.1| DNA primase [Streptococcus sanguinis SK1058]
          Length = 602

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 146/634 (23%), Positives = 269/634 (42%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL V        ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+   A++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARDYLYQRGLTDDALKHFQIGLAPNEGNYLHKSMVGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQEAASDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      + +        
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPTQQSQPVVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +I+HP ++  QY+   D  +D+ ELQ L+  L ++  E       
Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PNEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|327468858|gb|EGF14330.1| DNA primase [Streptococcus sanguinis SK330]
          Length = 602

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 143/634 (22%), Positives = 268/634 (42%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL V        ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    ++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMVGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQEAASDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          +  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------NHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----KDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      + +        
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPIQQSQPVVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +++HP ++  QY+   D  +D+ ELQ L+  L ++  E       
Sbjct: 468 RLSRLMKAENHIFHRMMHHP-LILNQYRLREDFAFDSEELQALYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|163815581|ref|ZP_02206954.1| hypothetical protein COPEUT_01756 [Coprococcus eutactus ATCC 27759]
 gi|158449218|gb|EDP26213.1| hypothetical protein COPEUT_01756 [Coprococcus eutactus ATCC 27759]
          Length = 600

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 163/634 (25%), Positives = 266/634 (41%), Gaps = 55/634 (8%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I ++L    I ++IG Y    ++ +N     Y ACCPFH EKTPSF  N  K  Y+CF C
Sbjct: 2   INEVLSRNDIVDVIGSYASLKKKGSN-----YEACCPFHHEKTPSFKVNREKQMYHCFGC 56

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRLIEVAT 125
            V G+  +F+      +F E+V+RLA  AG+ LP      ++  +E+ +  L  + + A 
Sbjct: 57  GVGGNVFTFVMEYENLNFPEAVERLAERAGIQLPEKSMSAQERSREQYKIALKEMNKTAA 116

Query: 126 DFFHHSLKNARDKRLHYYLDE--RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
            +FH+ LK+ +     Y      RG+    I  F LGYA   R  L  +L+ KG+++E++
Sbjct: 117 AYFHYILKHGQRGEKAYEYFRDTRGLTDETINRFALGYADIYRDDLYRYLKNKGYTDEQL 176

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
             +GL +D        D+F NR + PI    G+VIAFGGR L      KY+N+ +T +F 
Sbjct: 177 KNSGL-VDITEKDGGVDKFWNRAMIPILDINGKVIAFGGRVL-GDGKPKYINTSDTAVFD 234

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K   L+    A    +K              I  EGYMDV+S+ QAG  N V+SLGTA T
Sbjct: 235 KSHTLFAMNIARRSRRKG------------FICCEGYMDVISMHQAGFDNAVASLGTAFT 282

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
                ++ + +  + L +D D  G+ A  K I +       G     + +   +DPD FI
Sbjct: 283 FGHANIIKRYADEVYLAYDSDGAGVAATKKVIAI---LREVGVGARVINMRPYKDPDEFI 339

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R  G  AFE  I ++   +  L +  +E    + P ER + +  +   I++I+D   R  
Sbjct: 340 RNLGSEAFEDRIKKAESGMMFLARIYSEEYDQSDPGERTKFQNQVAKEISYIEDPLERNN 399

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNA---------RHRDQKGPSQRLMQSSLVKG 474
           Y  AI             +   YG                       P       +   G
Sbjct: 400 YIDAIARAYVINRDALAEKVHDYGVAGTPKPDVVEREERRLEEQTTNPDSGTGSGTASHG 459

Query: 475 KLSKK--PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           +  +    +     LL  L+N P++ ++    +++  +D    + +   LFS + EQ   
Sbjct: 460 RQGRDVGENKTARLLLTWLVNEPSLFEKLDGVISEEDFDPGVFRTVAEKLFSQYREQHKV 519

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
            P  +     +     L+  + +      +        I DV +                
Sbjct: 520 EPAIVVNTFQDVEEQRLVASMLQTDLSIDMTEEEISGAITDVVKKI-------------- 565

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            +   I+K +    ++ +  K   LI    ++  
Sbjct: 566 -KLASIKKHL---ESENDITKVQQLIKDRKKIEK 595


>gi|319425508|gb|ADV53582.1| DNA primase [Shewanella putrefaciens 200]
          Length = 574

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 177/627 (28%), Positives = 298/627 (47%), Gaps = 55/627 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+    I  LI + V   +   N     Y ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   G+ + F+       FI++++ LA   G+ +P      ++ +  +  DL +
Sbjct: 56  FYHCFGCGAHGNAIDFVMEYDRLDFIDAIEDLAGQLGLEVPREQGTGKRHDDGLSRDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A+ +F + L+  +DK+    YL  RG+    +E F +G+APD    L    RQ   
Sbjct: 116 LMEEASRYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +++K++ AG+LI  +++   YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 176 AQDKLLTAGMLI-ANDNGKRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +              +++VEGYMDV++L Q GV   V+SL
Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------DKVLIVEGYMDVVALAQFGVDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  +V C+DGD  G  AA++A++  L  L PG++V F+ L + ED
Sbjct: 284 GTSTTAEQFQLLLRSAKEVVCCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK AFE L+  ++ L + L+             +++ L       I  I+D 
Sbjct: 344 PDSMVRKIGKEAFETLMGSAIALPEFLFDTLATKY----GTDKSNLAKQAFILIEKIQDT 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L+    + +  +L     + + +  G+     K    +  KG    L            
Sbjct: 400 VLQNLLLENLAHKLGMNSSEDMKKKLGFSVKQTKTVAKQGLKGRGTPL------------ 447

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                    +  L+ HP +      + A        +      L  D   ++     ++ 
Sbjct: 448 ------RLAIALLVQHPQLGLGLPPQPALNHLQMPGIDL--LPLLLDLTREQRLNSAQLL 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++  +      L +L +            +    ++ + ++Q L ++   + + ++ +E+
Sbjct: 500 EQFRDNPHSGALHKLAQW---------DHQVADENLLEKFKQTL-VWLNNQYIEQRYQEL 549

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVH 625
              + Q   K E  +   LIS++  ++
Sbjct: 550 --SLKQTHTKEEKIQLQKLISVMKGLN 574


>gi|172062814|ref|YP_001810465.1| DNA primase [Burkholderia ambifaria MC40-6]
 gi|171995331|gb|ACB66249.1| DNA primase [Burkholderia ambifaria MC40-6]
          Length = 622

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 179/654 (27%), Positives = 282/654 (43%), Gaps = 63/654 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111
           +CF C   G  + FL    G +F E+VQ LA   G+ +P             D      +
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGDYPAPVSK 116

Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS--- 168
            + T L  ++ VA D++   L+         YL  RG+       F LGYAPD   +   
Sbjct: 117 SVATALSDVMSVACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLET 174

Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
                R +   E  ++      D    A  YDRFR R++FPIR+ +GQVI FGGR L  G
Sbjct: 175 AFPDYRDESLVESGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLGSG 234

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
           E  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L Q
Sbjct: 235 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALAQ 283

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
            G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A++  L H      +
Sbjct: 284 LGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTI 343

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
            F+ L    DPDS++R +G  AF + +  ++PL   L       ++ + P+ RA+     
Sbjct: 344 RFLFLPSEHDPDSYVREFGAQAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDA 403

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           K  +  +    LR        DRL   F++         R     ARH   +   +R+  
Sbjct: 404 KPLLQALPANALRAQIMHMFADRLDIPFEEVAALSDVDARIA-APARHAPPRSERRRVTD 462

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S              E   L TL+ HP I  +   E          + +L++ +      
Sbjct: 463 S--------------EKRALRTLVMHPRIASQLDDEQLATLRALPRIGELFAEVVEHARA 508

Query: 529 QKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ- 579
                    L + +        + E+ +++   D  VRD  L +   E      R+  + 
Sbjct: 509 LGDGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQERI 568

Query: 580 -----QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                QA  L  R+     + + + +Q        E  +   L     ++  ++
Sbjct: 569 AGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 620


>gi|148827723|ref|YP_001292476.1| DNA primase [Haemophilus influenzae PittGG]
 gi|148718965|gb|ABR00093.1| DNA primase [Haemophilus influenzae PittGG]
          Length = 593

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 173/634 (27%), Positives = 290/634 (45%), Gaps = 55/634 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       FIE+++ LAA+AG+ +P         K +   + + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L++    F+ + L    + +   YL +RG+    IE F++G+ P++  ++       
Sbjct: 119 LYELMQEIAKFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+IE G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLNS
Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PETI +HKGK LY  + AL             +    +++VEGYMDV++L Q GV   V+
Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T  Q++L+++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD++IR YGK  FE+ I  +  L + ++   +    F+T + R +L       I+ I 
Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR      +  +L    Q  +              +        +  M         
Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPM--------- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     ++  L+ +P +++   +             ++   L +   +++     +
Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +      +   L+ L                +  D+   + Q      R   +   + 
Sbjct: 507 ILEYFRNTSYSNPLEILATWDHL---------LDESDIINAFSQ----NYRRLNIQAIER 553

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +IE  IA+   +G   +   ++  L     Q  +
Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587


>gi|116492862|ref|YP_804597.1| DNA primase [Pediococcus pentosaceus ATCC 25745]
 gi|116103012|gb|ABJ68155.1| DNA primase [Pediococcus pentosaceus ATCC 25745]
          Length = 620

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 166/636 (26%), Positives = 287/636 (45%), Gaps = 45/636 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P D I D+   + I++++G+YV   +   N      +  CPFHDEKTPSF  ++SK  +
Sbjct: 5   IPEDVIDDVRTSVDIADVVGRYVQLRKAGKNL-----FGVCPFHDEKTPSFSVSESKQIF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIR 119
           +CFSC   G+   FL  L   SF ESV+R+A    +PL     K  KK      Q+ LI 
Sbjct: 60  HCFSCGRGGNVFKFLMDLENLSFPESVRRVAEFGNIPLDQSYFKSTKKSSYTSEQSALID 119

Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L E A++ F H  L     +    YL +RG+    I+ F +G+A      L    ++   
Sbjct: 120 LYEKASELFSHILLNTKLGEDALQYLKKRGMTEDDIKNFDIGFAAPEDNLLLSFFKEHKI 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSP 237
            +  + E+GL I+   + T  DRF NR+IFPI+ + G+++AF GR+L K +   KYLNSP
Sbjct: 180 DQHLMAESGLFIES-ENQTLRDRFFNRIIFPIKDTNGKIVAFSGRSLVKDKNHPKYLNSP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +F+KGK LYNF  A + +               +IL EG+MDV++  +A V+N +++
Sbjct: 239 ETSIFNKGKVLYNFSQARSEI----------IQQKTVILYEGFMDVIAAHRAAVKNGIAT 288

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT+LTE  +  + +++ R+++CFDGD PG +A  +AI+L+        +++ V +    
Sbjct: 289 MGTSLTEDHINAIKRVADRVIICFDGDAPGQKAIARAIELLR--QSSDLQISVVFIPDNL 346

Query: 358 DPDSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD ++   G  AF+ L+ ++       L K +    +    +++ E        I+ +K
Sbjct: 347 DPDEYVNQRGTAAFQNLMQQTGESSTSFLLKYDRTGLNLANENDQLEYLKRALKRISSLK 406

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--- 473
           D   +  Y   + D  +   +    +          +A  + +   S        +    
Sbjct: 407 DALEQDLYLNQLSDEFKIDKRDLKDQLRESVADRIAHAPKQFELEASMPPPPPEAMGDQP 466

Query: 474 ------GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
                  K   K  + E  LL   +N+  +  +  Q L +  + N +L+ ++        
Sbjct: 467 VFNQNIQKKLSKIDISEYRLLARALNNHDVWLK-LQSLPNFYFPNEKLETIYVLASGYLE 525

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           +   +   +    L E     ++  ++               +     +  Q  L++ + 
Sbjct: 526 KNHEYNVADFMDYLKEDELQAVVADIESI-----------NLSPEFTEEEIQDYLSVIEN 574

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
           F  LS Q   ++  + + T  G  E    L   L  
Sbjct: 575 FAPLSEQISNVKLDLDEATRLGNKELQQQLTLKLIA 610


>gi|190572509|ref|YP_001970354.1| DNA primase [Stenotrophomonas maltophilia K279a]
 gi|190010431|emb|CAQ44039.1| putative DNA primase [Stenotrophomonas maltophilia K279a]
          Length = 579

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 181/625 (28%), Positives = 277/625 (44%), Gaps = 50/625 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI DLL    I  ++G  V   R+       +Y A CPFHDE++ SF  + +K F
Sbjct: 3   RIPDAFIDDLLARTDIVEVVGSRVPLKRQGK-----EYAARCPFHDERSASFTVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRL 120
           Y+CF C   G  +SFL       F+++V  LA  AG+ +P   +P+  +++    +L   
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEVPRNENPRSPQQQDDSRELYSA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           ++ A  FF  +L+++   +   YLD RG+D      F++GYAPD    LR+ L +     
Sbjct: 118 LDAAARFFQKNLESSD--KARSYLDGRGVDEENRARFQIGYAPDGYSGLRDALGKDERRM 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + +  AGL    D     YD+FR+R++FPI   RG+VIAFGGR   K +  KYLNSPET 
Sbjct: 176 KLLDRAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRVFEKDDGPKYLNSPETA 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LY  +      QK  R          +I+VEGYMDV+SL Q GV   V++LGT
Sbjct: 235 LFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAVATLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T     LL++ +P +  CFDGD  G RA +KA++ VL  +  G +  F+ L  GEDPD
Sbjct: 285 ATTPDHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPD 344

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           + +R  G  AF + + ++ PL    +   T   +  T D +A L    K  +  I D   
Sbjct: 345 TIVRKEGAEAFNERLKQATPLSQFFFDELTREINLGTLDGKARLAERAKPMLAQIPDGAF 404

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                Q +                G  +  +     R  +   Q + + SLV+G      
Sbjct: 405 GDLMKQQLAQLTG---------LGGTAQATRAPMPQRQPQRTIQPVAKRSLVRGA----- 450

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                  +  L+  P++      +          ++     L     ++       + + 
Sbjct: 451 -------IAVLLQQPSLALTLGGKHHFQGLRLPGVEL-LLELLGLVEQRPDISTGALLEH 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
              R     L  L  Q       S T E            A+A  ++  L+ R +E + K
Sbjct: 503 FDGREEQASLHTLAAQTLPGTEASWTQE---------LHDAVAQLEKQLLVQRLEELLAK 553

Query: 601 QIAQVTAKGEAEKTAILISILHEVH 625
           Q  Q     +  +   L+     + 
Sbjct: 554 QRQQGLDDTDKYELRELLKARAGLR 578


>gi|254253608|ref|ZP_04946925.1| DNA primase [Burkholderia dolosa AUO158]
 gi|124898253|gb|EAY70096.1| DNA primase [Burkholderia dolosa AUO158]
          Length = 624

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 178/656 (27%), Positives = 282/656 (42%), Gaps = 65/656 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-------------DPKIEK 109
           +CF C   G  + FL    G +F E+VQ LA   G+ +P               D     
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGGGDYPAPV 116

Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167
            + + T L  ++ VA D++   L+         YL  RG+       F LGYAPD     
Sbjct: 117 SKSVATALSDVMSVACDYYRKQLRG--ATVAIQYLKSRGLTGEIAARFGLGYAPDGWQNL 174

Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
            +     R +   E  ++      D    A  YDRFR R++FPIR+ +GQVI FGGR L 
Sbjct: 175 EAAFPDYRDESLVESGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLG 234

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
            GE  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L
Sbjct: 235 SGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVAL 283

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
            Q G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A+D  L H     
Sbjct: 284 AQLGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNR 343

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
            + F+ L    DPDS++R +G  AF + +  ++PL   L       ++ + P+ RA+   
Sbjct: 344 TIRFLFLPPEHDPDSYVREFGADAFSEQVERAMPLSQFLLNEAISGKALDQPEGRAKALF 403

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             K  +  +    LR        DRL   F++         R      RH   +   +R+
Sbjct: 404 DAKPLLQALPANALRAQIMHMFADRLDIPFEEVAALCDVDSRIA-APLRHAPARSERRRV 462

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
             S              E   L TL+ +P I  +   E          + +L++ +    
Sbjct: 463 TDS--------------EKRALRTLVMYPRIALQLDDEQIATLRVLPRIGELFAEVVDHA 508

Query: 527 VEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGY 578
                      L + +        + E+ +++   D  VRD  L +   +A     R+  
Sbjct: 509 RALGDGAEFRLLSDVLRTSSNAATYEEIFREILDYDENVRDLLLQNPDDDAAAERQREQE 568

Query: 579 Q------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +      QA  L  R+     + + + +Q        E  +   L     ++  ++
Sbjct: 569 RIAGEELQAAVLKMRYDACCDRLDRLARQ--SALTSEELAELTELNQQRTDMKRRL 622


>gi|59801381|ref|YP_208093.1| DNA primase [Neisseria gonorrhoeae FA 1090]
 gi|240127997|ref|ZP_04740658.1| DNA primase [Neisseria gonorrhoeae SK-93-1035]
 gi|268603437|ref|ZP_06137604.1| DNA primase [Neisseria gonorrhoeae PID1]
 gi|268686385|ref|ZP_06153247.1| DNA primase [Neisseria gonorrhoeae SK-93-1035]
 gi|293399242|ref|ZP_06643407.1| DNA primase [Neisseria gonorrhoeae F62]
 gi|59718276|gb|AAW89681.1| putative DNA primase [Neisseria gonorrhoeae FA 1090]
 gi|268587568|gb|EEZ52244.1| DNA primase [Neisseria gonorrhoeae PID1]
 gi|268626669|gb|EEZ59069.1| DNA primase [Neisseria gonorrhoeae SK-93-1035]
 gi|291610656|gb|EFF39766.1| DNA primase [Neisseria gonorrhoeae F62]
          Length = 590

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 181/608 (29%), Positives = 291/608 (47%), Gaps = 42/608 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I  +I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVGIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q GV   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGK  FE  L+ +S PL +  W+  ++    NT + +AEL       +  I
Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLVQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + ++ K P   + Q  +    
Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               P+L +  +   LIN P        +L D    + +   L +   +           
Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + ++ R    +       E +  + + G ++ L   K  ++ + ++
Sbjct: 507 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 566

Query: 596 EEIEKQIA 603
           + ++  + 
Sbjct: 567 KSLQSGLN 574


>gi|324993241|gb|EGC25161.1| DNA primase [Streptococcus sanguinis SK405]
          Length = 602

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 145/634 (22%), Positives = 268/634 (42%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     Y   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL V        ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    ++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQEAASDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 DLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      + +        
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPIQQSQPVVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +I+HP ++  QY+   D  +D+ +LQ L+  L ++  E       
Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEDLQVLYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|301169247|emb|CBW28844.1| DNA primase [Haemophilus influenzae 10810]
 gi|740008|prf||2004290A primase
          Length = 593

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 172/634 (27%), Positives = 290/634 (45%), Gaps = 55/634 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       F+E+++ LAA+AG+ +P         K +   + + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFVEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L++    F+ + L    + +   YL +RG+    IE F++G+ P++  ++       
Sbjct: 119 LYELMQEIATFYQNQL--PLNSQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+IE G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLNS
Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PETI +HKGK LY  + AL             +    +++VEGYMDV++L Q GV   V+
Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T  Q++L+++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD++IR YGK  FE+ I  +  L + ++   +    F+T + R +L       I+ I 
Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR      +  +L    Q  +              +        +  M         
Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     ++  L+ +P +++   +             ++   L +   +++     +
Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +      +   L+ L                +  D+   + Q      R   +   + 
Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +IE  IA+   +G   +   ++  L     Q  +
Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587


>gi|73540590|ref|YP_295110.1| DNA primase [Ralstonia eutropha JMP134]
 gi|72118003|gb|AAZ60266.1| DNA primase [Ralstonia eutropha JMP134]
          Length = 604

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 171/643 (26%), Positives = 283/643 (44%), Gaps = 58/643 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI+DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPQSFIQDLLNRVDIVDVVGKYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-----PKIEKKEKIQTDL 117
           +CF C   G  + FL    G S+ E+V+ LA   G+ +P         +  +++     L
Sbjct: 57  HCFGCGAHGSAIGFLMEYSGQSYPEAVRELAQSVGMSVPEERDRLPPGQRAEQQARSVAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              +  AT+F+   L+     +   YL  RG+       F LGYAPD    L        
Sbjct: 117 SDAMSRATEFYRRQLRG--APQAIQYLKGRGLTGEIAAQFGLGYAPDDWQGLEAVFGSYR 174

Query: 178 FSEE--------KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
                        +IE+    D D     YDRFR+R++FPIR+++G VI FGGR + +GE
Sbjct: 175 DDTIAAPLVEAGLLIESSEKRDADGKPRRYDRFRDRIMFPIRNTKGAVIGFGGRVIGQGE 234

Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289
             KYLNSPET LF KG  LY  F A + ++           + ++++VEGYMDV++L Q 
Sbjct: 235 P-KYLNSPETPLFSKGTELYGLFEARHAIR----------ETGYVLVVEGYMDVVALAQL 283

Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
           G  N V++LGTA T   ++ L + +  +V  FDGD  G RAA +A++  L H+     + 
Sbjct: 284 GFANAVATLGTACTPVHVQKLLRQTDSVVFSFDGDAAGRRAARRALEACLPHVADNKAIR 343

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           F+ L    DPDS++R  G  AF   + +++PL   L +  TE +    P+ RA  +   K
Sbjct: 344 FLFLPAEHDPDSYVREEGTEAFAAQVRDAMPLSRFLLQAVTEEQDMRQPEGRARAQYEAK 403

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             +  +    LR    + + D         I    G      +  R    +  ++R   +
Sbjct: 404 PLLQAMPACGLRLQIIRELADATG-TTPAEIEAICGLRSDPARAGRFAQPRPRAKRQAPT 462

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN--ELQKLWSFLFSDFV 527
            L            E  +L  L+ +P++     ++   +  D    + + L   + +   
Sbjct: 463 GL------------EQRVLQLLMCYPSLAARLDEDSRALLLDPEGADAEVLAHLVAACDE 510

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
            +         + L +  + E+       V    +     E    +      + LA    
Sbjct: 511 VEGQVNFAAFSEHLAQSPYAEMYAAARTAVLREEIE---EEPATQEFDAAVTKLLA---- 563

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629
              LSR+ E ++  +   TA  + ++    +  L  E+H +  
Sbjct: 564 -EPLSRELERLQAAVIAGTADEDGKQR---MRWLVGEIHRRRR 602


>gi|167573585|ref|ZP_02366459.1| DNA primase [Burkholderia oklahomensis C6786]
          Length = 625

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 172/657 (26%), Positives = 274/657 (41%), Gaps = 66/657 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI---- 118
           +CF C   G  + FL    G +F E+VQ LA  AG+ +P     +        D      
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSAGLTVPHEPSPMRGGGGSPGDGYAPLA 116

Query: 119 ----------RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY- 167
                      +++ A D++   L+         YL  RG+       F LGYAPD    
Sbjct: 117 ASKAVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQN 174

Query: 168 --SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
             +  +  R     +  ++      D +  A  YDRFR R++FPIR+ +GQVI FGGR L
Sbjct: 175 LEAAFDDYRHDSLVDAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVL 234

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
             GE  KYLNSPET LF+KG  LY  F A   ++             + ++VEGYMDV++
Sbjct: 235 DGGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------DHKYALVVEGYMDVVA 283

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           L Q G  N V++LGTA T   ++ L + +  +V  FDGD  G RAA +A++  L H    
Sbjct: 284 LAQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDSAGRRAARRALEACLPHAADN 343

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             + F+ L    DPDS++R +G  AF + +  ++PL   L    T  +  + P+ RA+  
Sbjct: 344 RTIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKAL 403

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              K  +  +    LR        +RLQ  F +         R                 
Sbjct: 404 FDAKPMLQALPANALRAQIMHMFAERLQIPFDEVAALVEVDARIA--------------- 448

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                       ++ +  E   L  L+ HP I      E            +L+  +   
Sbjct: 449 APARQAPARSERRRVTDNEKRALRNLVMHPRIAATLDDESLATLRALPRNGELFDEVIGH 508

Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577
                       L + +        + E+ +++   D  VRD    +  ++     +R+ 
Sbjct: 509 ARALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDVAQEGLREQ 568

Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +      QA  L  R+     +   + K+     + GE  +   L   L ++  ++
Sbjct: 569 ERIAGEELQAAVLKMRYDACRDRLNSLSKR--SAPSSGELAEIKDLHQNLADMKRRL 623


>gi|111221462|ref|YP_712256.1| DNA primase [Frankia alni ACN14a]
 gi|111148994|emb|CAJ60674.1| Primase; primer synthesis for leading-and lagging-strand synthesis;
           binds Zn(II) [Frankia alni ACN14a]
          Length = 703

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 141/650 (21%), Positives = 250/650 (38%), Gaps = 48/650 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 +  +    PI++++ ++V       N    +    CPFH+EK+PSF+ N + G 
Sbjct: 78  RIRDADVALVRERSPIADVVSEHVQLRPAGRN----ELVGLCPFHEEKSPSFYVNVATGL 133

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIR 119
           ++CF C   GD  SF+  + G SF E+ +RLA  AGV L         +     +  L+ 
Sbjct: 134 FHCFGCQQGGDVYSFVREIDGLSFREAAERLARRAGVTLTFEGGGTTDRTVSSQRQRLLE 193

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              +A +F+   L  +   +    +L  RG D  A + F +GYA     +L  HL  + F
Sbjct: 194 AHRIAAEFYAEQLGGHPSARAGWDFLTARGFDLTAAQRFGVGYAATGWDTLTRHLLSRRF 253

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG----ESVKYL 234
           + E+++  GL           DRF +RL++PIR   G+V+ FGGR L++        KYL
Sbjct: 254 TGEELVLGGL-SKQGARGGLIDRFHHRLMWPIRDLAGEVVGFGGRRLAEDGSPNAGPKYL 312

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET LF K   LY    A   + +             +++VEGY DV++   AGV   
Sbjct: 313 NSPETPLFKKASLLYGAELARRDIARRY----------QVVVVEGYTDVMACHLAGVTTA 362

Query: 295 VSSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           V++ GTA     + ++ +           ++  FDGD  G +AA +A +          +
Sbjct: 363 VATCGTAFGPEHVGVVRRLLMDSDERRGEVIFTFDGDAAGQKAALRAFEHEERFAT---Q 419

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
               +   G DP       G  A  +L+   +PLV+   +        +T + R      
Sbjct: 420 TFVAVEPTGLDPCELWMRGGDAAVRELVARRVPLVEFAIRGVLARYDLDTTEGRLAALDA 479

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
               IN IKD  LR+ ++  +   L  L ++++       R  +   R         R  
Sbjct: 480 AAPLINRIKDAGLRHRHAVNLDRWLGFLDERFVARRVAEHREQQTGGRSAAVASAVGRR- 538

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL----F 523
                +   +    + E   L   +  P +    +  LA   +     + +   +     
Sbjct: 539 -----EPAATDPTVIVEREALKLAVQFPGLAGPMFDTLAPEMFTVPAHRAVRELISGLGG 593

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                 +          L      E L++    +    +       +     Q       
Sbjct: 594 VGGGLARTGDVAAWVTELSAAATEEGLRRFVTALAVERVLCDRDVDDRYVDEQM------ 647

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
              +   ++R+  +++ ++ ++    +AE        L  +    HQ+  
Sbjct: 648 SRVQELHVTRRITDLKSRVQRLNPVVDAEAFNRAYGELIALEQHKHQLRE 697


>gi|332185672|ref|ZP_08387419.1| DNA primase [Sphingomonas sp. S17]
 gi|332014030|gb|EGI56088.1| DNA primase [Sphingomonas sp. S17]
          Length = 615

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 197/624 (31%), Positives = 299/624 (47%), Gaps = 47/624 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+    F+ +L     +S LIG+ V   +        +Y  CCPFH+EKTPSF+ ND KG
Sbjct: 1   MSLTPQFLDELRARTSLSALIGKTVKLQKAGR-----EYKGCCPFHNEKTPSFYVNDDKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF C   GD + +++   G  FI++V+ LA +AG+ +P  D +  +K +    L   
Sbjct: 56  FYHCFGCSAHGDAIRWMTDQRGLPFIDAVKELAQVAGLEMPAQDRRAAQKAERAKGLHDA 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A ++F   L           L+ R +       F LG+APDSR  L+  L   G   
Sbjct: 116 MADAANWFSEQLGGLSGGDARALLERRRVTPETARAFGLGFAPDSRGKLKAALADYGDP- 174

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +IE GLLI  D     YDRFR RL+ PIR +RG+VIAFGGR + +GE  KYLNSP+T 
Sbjct: 175 -ALIECGLLIKVDGKD-PYDRFRGRLMIPIRDARGRVIAFGGRIIGEGEP-KYLNSPDTP 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+ LYN   A   ++KS R          +++VEGYMDV++L QAG++  V+ LGT
Sbjct: 232 LFDKGRTLYNLDRAAAAVRKSGR----------VLVVEGYMDVIALAQAGIEEAVAPLGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE+QL  LW++     LCFDGD  G +AA +A    L  L PG  ++FV L +G+DPD
Sbjct: 282 ALTEHQLERLWRMVDVPTLCFDGDAAGQKAAIRAAHRALPLLQPGKSLSFVTLPQGQDPD 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G   FE ++  + PL D+LW+ E      +TP+ RA L+  L+     I  + L
Sbjct: 342 DLVQEKGAAGFESVLTRATPLSDLLWQSEIAQAQTDTPEGRAALKQRLEELAQQIPHKDL 401

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            Y Y +A+  R   +F                    R       + +  +        + 
Sbjct: 402 AYEYKRAMMSRYFDIF-----------------GIRRVNAAAVHQAVAEANRHVGRGVEY 444

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           SL+  A+LL L+ +P +L     EL+ +   +  L      L    V   +   ++    
Sbjct: 445 SLK-RAVLLGLMRYPHVLCRYMDELSRLDMGDRYLNDWRHHLLDAAVNDPHLSRKD---- 499

Query: 541 LCERGFGELLKQLDR--QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                   L++Q+     V        T +       +    A+A+    +++    EE 
Sbjct: 500 --AAEAESLIEQIMATTDVHPIDARDYTRDLAFSFFSKMSDPAIAVRDLEKVIEVMLEES 557

Query: 599 EKQIAQVTA--KGEAEKTAILISI 620
           E +  +  A    +A+ T    + 
Sbjct: 558 ETRANRARAVEAFQADMTEDRFAE 581


>gi|332362695|gb|EGJ40493.1| DNA primase [Streptococcus sanguinis SK49]
          Length = 602

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 145/634 (22%), Positives = 268/634 (42%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+E+VQ +A  AG+PL V        ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMEAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    ++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQEAASDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      + +        
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPIQQSQAVVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +++HP ++  QY+   D  +D+ ELQ L+  L ++  E       
Sbjct: 468 RLTRLMRAENHIFHRMLHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|21244600|ref|NP_644182.1| DNA primase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110280|gb|AAM38718.1| DNA primase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 582

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 170/631 (26%), Positives = 271/631 (42%), Gaps = 59/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    I  ++G  V   R+       +Y A CPFHDE++ SF  + +K F
Sbjct: 3   RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120
           Y+CF C   G  +SFL       F+++V  LA  AG+ +P    +   +++    +L   
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMDIPRETQQRTPQQQDDSRELYSA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E AT FF   L+ +   R   YLD RG+D+     F++GYAPD   +L++ L       
Sbjct: 118 LEAATKFFQRQLEGS--GRARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235
             +  AGL    D     YD+FR+R++FPI   RG+VIAFGGR +      +    KYLN
Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LFHKG+ LY  +      QK  R          +I+VEGYMDV+SL Q GV   V
Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T     LL++ +P +  CFDGD+ G +A ++A++ VL  +  G +  F+ L  
Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPD+ +R  G  AF++ + ++ PL    +   +   + +T D +A L    +  +  I
Sbjct: 345 GEDPDTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPLLAQI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +        Q +                      +   R R          + SLV+  
Sbjct: 405 PEGAFGDLMKQELARLTG---------VGANASAQQPAPRPRPPARMGAPTQKRSLVRAS 455

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                       +  L+  P++                 +  L   L     ++      
Sbjct: 456 ------------IAILLQRPSLAMSLEGVHDFSGLRLPGIDLLME-LLDLVRQRPEISTG 502

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + +   ER     L++L  Q                         +      +LL ++ 
Sbjct: 503 ALLEHFAEREELAALQKLAAQELPGD----------EHSWTLELHDVVAQLDKQLLRQRV 552

Query: 596 EEIEKQIAQVTAKGEAEKTA--ILISILHEV 624
           EE++ +  +     + +K     L+  L  +
Sbjct: 553 EELQAK-QRAQGLDDTDKYEMRELLKALAAL 582


>gi|318041285|ref|ZP_07973241.1| DNA primase [Synechococcus sp. CB0101]
          Length = 706

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 170/677 (25%), Positives = 295/677 (43%), Gaps = 71/677 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ +     I +++G++V   ++       ++   CPFHD+K+PS   + +K F
Sbjct: 8   RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGVCPFHDDKSPSMTVSPAKQF 62

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           YYCFSC   G+ + FL  L   SF + V  LA    +P+  ++   +++ +     +  L
Sbjct: 63  YYCFSCGAGGNAIKFLMELQRQSFSDVVLELARKYQLPVETLEGPQQERLRQQLSRRDQL 122

Query: 118 IRLIEVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            +++ +A  +F   L++        Y  ++RG+    +E F LGYAP+    L  HL+Q 
Sbjct: 123 HKVLSLAAGWFRSQLRSPDGASALAYLREQRGLSETTLESFGLGYAPERWDGLLSHLQQV 182

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +GF+ E +  AGL++        YDRFR+R++ PI   +G++I FGGR+L  GE  KYLN
Sbjct: 183 EGFAPELLEAAGLVVPRRGGDGFYDRFRHRVMVPICDRQGRIIGFGGRSLDGGEP-KYLN 241

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK+L+    A+N ++K  R           ++VEGY DV++L  AG+ N V
Sbjct: 242 SPETEVFEKGKHLFGLDKAVNAIRKDDRA----------VVVEGYFDVIALHAAGITNAV 291

Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352
           ++LGTAL+  Q+  L +     R++L FD D  G+RAA +AI  V    + G   +  + 
Sbjct: 292 AALGTALSSQQITQLCRCCDGKRLILNFDTDRAGVRAAQRAIGEVEQLALQGQLELRVLH 351

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+DPD F++ +G   +  L+ ++   +D    +  E R     D+  +    L   +
Sbjct: 352 LPAGKDPDEFLKEHGAGEYRSLLDQAPLWLDWQIDQVLEGRDLARSDQFQQSVSELVVLL 411

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    +R  Y Q + +RL     +   +     R   K  R   +    ++  ++ L 
Sbjct: 412 GKLPASAVRSRYLQQVAERLSGGQARLALQLEDDLRQQVKGQRWHGRSQRWEQPGEAGLR 471

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVE- 528
                      EA LL   ++ P        EL       +     ++LW+ + S   + 
Sbjct: 472 --------ERAEAELLRLYLHCPPHRGTIRAELRRRELDDFALAHHRQLWAAISSLEEDN 523

Query: 529 ---------QKYFLPEEIHQRLC---------ERGFGELLKQLDRQVRDAGLWSATTEAN 570
                     +   P      L              GE    L  ++      +      
Sbjct: 524 LGVGRLEAINRGVDPGVELADLELPRLLSDQLLLSDGESPSDLLTRLTPLLEPTDVQRLA 583

Query: 571 IVDVRQGYQQALALYKRFRLLSR-----------QKEEIEKQIAQVTAKG-----EAEKT 614
           + +     + A A  +R R L R           + E +E+ IA++  +G     E    
Sbjct: 584 LANPLLQLRGATASLERQRSLKRCRHLLNAWSAQRLETLERCIARLLEEGQAPAAEPAPG 643

Query: 615 AILISILHEVHIQIHQI 631
             L     ++  +I  +
Sbjct: 644 QALQPAALDMEARIEAM 660


>gi|145628916|ref|ZP_01784716.1| DNA primase [Haemophilus influenzae 22.1-21]
 gi|144979386|gb|EDJ89072.1| DNA primase [Haemophilus influenzae 22.1-21]
          Length = 593

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 172/634 (27%), Positives = 290/634 (45%), Gaps = 55/634 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       FIE+++ LAA+AG+ +P         K +   + + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRTNHSGKPQANYQTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L++    F+ + L    + +   YL +RG+    IE F++G+ P++  ++       
Sbjct: 119 LYELMQEIATFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+IE G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLNS
Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PETI +HKGK LY  + AL             +    +++VEGYMDV++L Q GV   V+
Sbjct: 235 PETITYHKGKELYGLYEALQA----------NDEPKQLLVVEGYMDVVALAQFGVDYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T  Q++L+++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD++IR YGK  FE+ I  +  L + ++   +    F++ + R +L       I+ I 
Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSSKEGRGKLVALAAPLIHQIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR      +  +L    Q  +              +        +  M         
Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPM--------- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     ++  L+ +P +++   +             ++   L +   +++     +
Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +      +   L+ L                +  D+   + Q      R   +   + 
Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +IE  IA+   +G   +   ++  L     Q  +
Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587


>gi|268590607|ref|ZP_06124828.1| DNA primase [Providencia rettgeri DSM 1131]
 gi|291313998|gb|EFE54451.1| DNA primase [Providencia rettgeri DSM 1131]
          Length = 581

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 163/595 (27%), Positives = 274/595 (46%), Gaps = 41/595 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +L+   V   ++  N     + ACCPFH+EKTPSF  N  + F
Sbjct: 4   RIPRSFINDLLARTDIIDLVDAKVPLKKQGKN-----HHACCPFHNEKTPSFTVNGERQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           YYCF C   G+ + FL       F+E+++ L+A+ G+ +P        + +   + +L +
Sbjct: 59  YYCFGCGAHGNAIDFLMNYDKLDFVEAIEELSALHGLDVPYEKGTGSSQIELHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E    F+  +L +    +   YL +RG+ +  IE F +G+AP    +L +       S
Sbjct: 119 LMEKINQFYCAALSHPSANKAKDYLSQRGLSTEIIEHFSIGFAPAGWDNLLKKFAVNPES 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            +++ +AG+L+  +++   YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET
Sbjct: 179 RKQLDDAGMLV-TNDNGRVYDRFRERVMFPIRDRRGRVIAFGGRVL-GDALPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ L+  + A              N  S +++VEGYMDV++L Q  ++  V+SLG
Sbjct: 237 DIFHKGRQLFGLYEA----------TQNSNELSKLLVVEGYMDVVALAQYDIRYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDP
Sbjct: 287 TSTTSEHIQLLYRSTDTVICCYDGDRAGREAAWRALETALPYLTDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS +R  GK AFE+ + ++  L   L+          T + +A+        I  I  + 
Sbjct: 347 DSLVRKEGKNAFEQRMKDAQTLSAFLFDSLVPQVDLKTQEGKAKFSKLAIPLIKQIPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y +Q + + +       +          + N +    K  +                
Sbjct: 407 LRLYMAQELGNFIGIPDISQVLAMIDRESTEQVNYQAPKLKPTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P   +               L  L+  L             ++ +
Sbjct: 452 -----RILIALLVQNPNFSELVPSLEGIAHIQMPGL-SLFQELVDVCRSTPGMSTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           R  +  F + L++L     D  +        I  +   +  AL     + +   +
Sbjct: 506 RYRDNKFAKQLEKLATW-NDIEIEEIAENTFIDALNHLFNSALDERFDYLIAKER 559


>gi|206562772|ref|YP_002233535.1| DNA primase [Burkholderia cenocepacia J2315]
 gi|198038812|emb|CAR54774.1| putative DNA primase [Burkholderia cenocepacia J2315]
          Length = 625

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 172/657 (26%), Positives = 276/657 (42%), Gaps = 66/657 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------------DPKIE 108
           +CF C   G  + FL    G +F E+VQ LA   G+ +P                D    
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGGGGDYPAP 116

Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY- 167
             + + T L   +  A D++   L+         YL  RG+       F LGYAPD    
Sbjct: 117 VSKSVATALSDAMTAACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQN 174

Query: 168 --SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
             +     R +   E  ++      D    A  YDRFR R++FPIR+ +GQVI FGGR L
Sbjct: 175 LEAAFPDYRDESLVEAGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVL 234

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
             GE  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++
Sbjct: 235 GSGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVA 283

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           L Q G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A++  L H    
Sbjct: 284 LAQLGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAGDN 343

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             + F+ L    DPDS++R +G  AF + +  ++PL   L       ++ + P+ RA+  
Sbjct: 344 RTIRFLFLPTEHDPDSYVREFGAEAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKAL 403

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              K  +  +    LR        DRL   F++         R      +          
Sbjct: 404 FDAKPLLQALPANALRAQIMHMFADRLDIPFEEVAGLSDVDTRIATPPRQ---------- 453

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                       ++ +  E   L TL+ HP +  +   E          + +L++ +   
Sbjct: 454 -----APARSERRRVTDSEKRALRTLVMHPRVASQLDDEQIATLRALPRIGELFAEVVDH 508

Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577
                       L + +        + E+ +++   D  VRD  L +   E      R+ 
Sbjct: 509 ARALGEGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQ 568

Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +      QA  L  R+     + + + +Q        E  +   L     ++  ++
Sbjct: 569 ERIAGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 623


>gi|116691982|ref|YP_837515.1| DNA primase [Burkholderia cenocepacia HI2424]
 gi|170736024|ref|YP_001777284.1| DNA primase [Burkholderia cenocepacia MC0-3]
 gi|116649982|gb|ABK10622.1| DNA primase [Burkholderia cenocepacia HI2424]
 gi|169818212|gb|ACA92794.1| DNA primase [Burkholderia cenocepacia MC0-3]
          Length = 625

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 173/657 (26%), Positives = 276/657 (42%), Gaps = 66/657 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------------DPKIE 108
           +CF C   G  + FL    G +F E+VQ LA   G+ +P                D    
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGGGGDYPAP 116

Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY- 167
             + + T L   +  A D++   L+         YL  RG+       F LGYAPD    
Sbjct: 117 VSKSVATALSDAMTAACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQN 174

Query: 168 --SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
             +     R +   E  ++      D    A  YDRFR R++FPIR+ +GQVI FGGR L
Sbjct: 175 LEAAFPDYRDESLVEAGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVL 234

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
             GE  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++
Sbjct: 235 GSGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVA 283

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           L Q G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A++  L H    
Sbjct: 284 LAQLGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAGDN 343

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             + F+ L    DPDS++R +G  AF + +  ++PL   L       ++ + P+ RA+  
Sbjct: 344 RTIRFLFLPTEHDPDSYVREFGAEAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKAL 403

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              K  +  +    LR        DRL   F++         R      +          
Sbjct: 404 FDAKPLLQALPANALRAQIMHMFADRLDIPFEEVAALSDVDTRIATPPRQ---------- 453

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                       ++ +  E   L TL+ HP I  +   E          + +L++ +   
Sbjct: 454 -----APARSERRRVTDSEKRALRTLVMHPRIASQLDDEQIATLRALPRIGELFAEVVDH 508

Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577
                       L + +        + E+ +++   D  VRD  L +   E      R+ 
Sbjct: 509 ARALGDGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQ 568

Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +      QA  L  R+     + + + +Q        E  +   L     ++  ++
Sbjct: 569 ERIAGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 623


>gi|323352413|ref|ZP_08087548.1| DNA primase [Streptococcus sanguinis VMC66]
 gi|322121845|gb|EFX93586.1| DNA primase [Streptococcus sanguinis VMC66]
          Length = 602

 Score =  353 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 145/634 (22%), Positives = 268/634 (42%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL V     +  ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGIPLAVETAGNDRLRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    ++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAAASDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHIQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      +          
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPIQQSQPAVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +I+HP ++  QY+   D  +D+ ELQ L+  L ++  E       
Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQALYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|294626488|ref|ZP_06705087.1| DNA primase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599178|gb|EFF43316.1| DNA primase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 582

 Score =  353 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 172/631 (27%), Positives = 273/631 (43%), Gaps = 59/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    I  ++G  V   R+       +Y A CPFHDE++ SF  + +K F
Sbjct: 3   RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120
           Y+CF C   G  +SFL       F+++V  LA  AG+ +P    +   +++    +L   
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMDIPRETQQRTPQQQDDSRELYSA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E AT FF   L+ +  +R   YLD RG+D+     F++GYAPD   +L++ L       
Sbjct: 118 LEAATKFFQRQLEGS--ERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235
             +  AGL    D     YD+FR+R++FPI   RG+VIAFGGRT+      +    KYLN
Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRTMGAPADGRDPGPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LFHKG+ LY  +      QK  R          +I+VEGYMDV+SL Q GV   V
Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T     LL++ +P +  CFDGD+ G +A ++A++ VL  +  G +  F+ L  
Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPD+ +R  G  AF++ + ++ PL    +   +   S +T D +A L    +  +  I
Sbjct: 345 GEDPDTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREISLHTLDGKARLAERARPLLAQI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +        Q +                      +   R R          + SLV+  
Sbjct: 405 PEGAFGDLMKQELARLTG---------VGANASAQQPAPRPRPPARMGAPTQKRSLVRAS 455

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                       +  L+  P++                 +  L   L     ++      
Sbjct: 456 ------------IAILLQRPSLAMSLEGVHDFSGLRLPGIDLLME-LLDLVRQRPEISTG 502

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + +   ER     L++L  Q                         +      +LL ++ 
Sbjct: 503 ALLEHFAEREELAALQKLAAQELPGD----------EHSWTLELHDVVAQLDKQLLRQRV 552

Query: 596 EEIEKQIAQVTAKGEAEKTA--ILISILHEV 624
           EE++ +  +     + +K     L+  L  +
Sbjct: 553 EELQAK-QRAQGLDDTDKYEMRELLKALAAL 582


>gi|291459599|ref|ZP_06598989.1| DNA primase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417877|gb|EFE91596.1| DNA primase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 584

 Score =  353 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 178/628 (28%), Positives = 267/628 (42%), Gaps = 52/628 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP +FI++L     I ++IG YV   +R  N     Y+  CPFH EKTPSF     K 
Sbjct: 1   MYYPDEFIEELRSRANIVDVIGNYVSLKKRGAN-----YFGLCPFHGEKTPSFSVAPGKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLI 118
            +YCF C   GD L FL      SF E+VQRLA+   VPLP          +   +  L+
Sbjct: 56  IFYCFGCGKGGDVLKFLMEYENISFQEAVQRLASELNVPLPELSDTGAGRAERDRRMRLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            L   A  FF+ +L++        YL +RGI    I  + LGYA   R SL  +L+ KG+
Sbjct: 116 ELNRDAAVFFYAALRSDAGAPGLSYLKKRGIRGETIVHWGLGYADQRRDSLYRYLKGKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            +E + ++GL    +   +  DRF  R+IFPI     +VI FGGR + +GE  KYLNSPE
Sbjct: 176 EDELLRDSGLFRFSERGVS--DRFFQRVIFPILDVNMRVIGFGGRVIGEGEP-KYLNSPE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF K +NL+    A    QK             +IL EGYMDV+S+ QAG  N V+SL
Sbjct: 233 TELFDKSRNLFGLNFAKRSRQK------------QMILCEGYMDVISMHQAGFSNAVASL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LTE Q  LL +    +VL +D D+ G++AA +AI +       G     + L   +D
Sbjct: 281 GTSLTERQAALLKRYVSELVLSYDSDNAGVKAAKRAIPI---LREAGVEPKLLDLRPCKD 337

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN-HIKD 417
           PD  IR  G  +  + + ++        + E  N     P         +   ++    D
Sbjct: 338 PDELIRTKGPDSLRERLSKARNAFLWEVETEKGNYDLQDPAGLNAYYQAVGKLLSVSFSD 397

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R  Y +A+    Q +  + + +        +    +   +G S+   +S     +  
Sbjct: 398 PLERESYIRAVARE-QLIDYELLRQLVERRSGEQSPLLNPPGRGDSREQRRSG---RRAE 453

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            +    E  L+  L   P ++    + +      +   ++++  L              I
Sbjct: 454 SREQRTERQLIAWLSEKPDMIPIAEKHIRPSELSDEICREIFPLLCQRL------PASRI 507

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             R             +R  R A L S        D  +   + L    R   L R  EE
Sbjct: 508 LDRFRGDE--------ERYERAASLLSGDPVGTESD-EKALLKGLEDIIRSIRLRRLNEE 558

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVH 625
           IE++        + E+   L      + 
Sbjct: 559 IERE-------SDGERLTELFREQSALQ 579


>gi|294666748|ref|ZP_06731983.1| DNA primase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292603493|gb|EFF46909.1| DNA primase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 582

 Score =  353 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 170/631 (26%), Positives = 272/631 (43%), Gaps = 59/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    I  ++G  V   R+       +Y A CPFHDE++ SF  + +K F
Sbjct: 3   RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120
           Y+CF C   G  +SFL       F+++V  LA  AG+ +P    +   +++    +L   
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEIPRETQQRTPQQQDDSRELYSA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E AT FF   L+ +  +R   YLD RG+D+     F++GYAPD   +L++ L       
Sbjct: 118 LEAATKFFQRQLEGS--ERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235
             +  AGL    D     YD+FR+R++FPI   RG+VIAFGGR +      +    KYLN
Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LFHKG+ LY  +      QK  R          +I+VEGYMDV+SL Q GV   V
Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T     LL++ +P +  CFDGD+ G +A ++A++ VL  +  G +  F+ L  
Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPD+ +R  G  AF++ + ++ PL    +   +   + +T D +A L    +  +  I
Sbjct: 345 GEDPDTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPLLAQI 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +        Q +                      +   R R          + SLV+  
Sbjct: 405 PEGAFGDLMKQELARLTG---------VGANASAQQPAPRPRPPARMGAPTQKRSLVRAS 455

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                       +  L+  P++                 +  L   L     ++      
Sbjct: 456 ------------IAILLQRPSLAMSLEGVHDFSGLRLPGIDLLME-LLDLVRQRPEISTG 502

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + +   ER     L++L  Q                         +      +LL ++ 
Sbjct: 503 ALLEHFAEREELAALQKLAAQELPGD----------EHSWTLELHDVVAQLDKQLLRQRV 552

Query: 596 EEIEKQIAQVTAKGEAEKTA--ILISILHEV 624
           EE++ +  +     + +K     L+  L  +
Sbjct: 553 EELQAK-QRAQGLDDTDKYEMRELLKALAAL 582


>gi|260582764|ref|ZP_05850551.1| DNA primase [Haemophilus influenzae NT127]
 gi|260094214|gb|EEW78115.1| DNA primase [Haemophilus influenzae NT127]
          Length = 593

 Score =  353 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 172/634 (27%), Positives = 290/634 (45%), Gaps = 55/634 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       FIE+++ LAA+AG+ +P         K +   + + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRTNHSGKPQANYQTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L++    F+ + L    + +   YL +RG+    IE F++G+ P++  ++       
Sbjct: 119 LYELMQEIATFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+IE G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLNS
Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PETI +HKGK LY  + AL             +    +++VEGYMDV++L Q GV   V+
Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T  Q++L+++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD++IR YGK  FE+ I  +  L + ++   +    F++ + R +L       I+ I 
Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSSKEGRGKLVALAAPLIHQIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR      +  +L    Q  +              +        +  M         
Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPM--------- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     ++  L+ +P +++   +             ++   L +   +++     +
Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +      +   L+ L                +  D+   + Q      R   +   + 
Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +IE  IA+   +G   +   ++  L     Q  +
Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587


>gi|145637427|ref|ZP_01793086.1| DNA primase [Haemophilus influenzae PittHH]
 gi|145269373|gb|EDK09317.1| DNA primase [Haemophilus influenzae PittHH]
          Length = 593

 Score =  353 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 172/634 (27%), Positives = 291/634 (45%), Gaps = 55/634 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       F+E+++ LAA+AG+ +P         K +   + + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFVEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L++    F+ + L    + +   YL +RG+ +  IE F++G+ P++  ++       
Sbjct: 119 LYELMQEIATFYQNQL--PLNSQAQEYLQQRGLSAEIIERFQIGFVPNAMDTVLRKFGVN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+IE G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLNS
Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PETI +HKGK LY  + AL             +    +++VEGYMDV++L Q GV   V+
Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T  Q++L+++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD++IR YGK  FE+ I  +  L + ++   +    F+T + R +L       I+ I 
Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR      +  +L    Q  +              +        +  M         
Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     ++  L+ +P +++   +             ++   L +   +++     +
Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +      +   L+ L                +  D+   + Q      R   +   + 
Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +IE  IA+   +G   +   ++  L     Q  +
Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587


>gi|325696736|gb|EGD38624.1| DNA primase [Streptococcus sanguinis SK160]
          Length = 602

 Score =  353 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 144/634 (22%), Positives = 267/634 (42%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL V        ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL  RG+    ++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYRRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQEAATDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA++ +         V  V +  
Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALNEL-----KDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      + +        
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEVPTQQSQPVVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +I+HP ++  QY+   D  +D+ ELQ L+  L ++  E       
Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLSDNVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|83814662|ref|YP_445102.1| DNA primase [Salinibacter ruber DSM 13855]
 gi|83756056|gb|ABC44169.1| DNA primase [Salinibacter ruber DSM 13855]
          Length = 655

 Score =  353 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 172/674 (25%), Positives = 287/674 (42%), Gaps = 59/674 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P + I+++   + +  +   YV   +  +      Y   CPFH+E TPSF  +  + 
Sbjct: 1   MAIPDEKIEEVRTAVDLVEVAEDYVQLKQSGS-----RYMGLCPFHNEDTPSFSVDPDQN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            YYCF C   GD   F+  + G  F+ESV+ LA   GVPLP  +         +  ++  
Sbjct: 56  LYYCFGCQNGGDAFKFVQEIEGVGFLESVRMLADRYGVPLPEEET-DPDAANEREAVLHA 114

Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A  FF+  L ++ R +    YL  RG     I+ F LGYAPD   +L     ++   
Sbjct: 115 LRFAARFFYRQLTQSDRGRPALDYLRRRGFTPQTIKQFGLGYAPDEWDALLTVAEEEQID 174

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG---ESVKYLNS 236
            E + +AGL+I+ ++ +  YDR+R R+IFPI S  G+V+AF GR L      +  KY+NS
Sbjct: 175 RETLEKAGLIIERNDGSGYYDRYRGRIIFPIFSHIGKVLAFAGRILDPDDERDQPKYINS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET ++HK + LY    A   ++K          +  ++LVEGY DV+SL QAGV NVV+
Sbjct: 235 PETEVYHKKEVLYGLHQAKQAIRK----------TDEVLLVEGYTDVISLSQAGVGNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S GTALTE Q+  L + + R V+ +D D+ G RAA + ++ VL     G     V L  G
Sbjct: 285 SSGTALTEQQIGTLDRYAKRAVMLYDADEAGERAALRGMERVL---EAGLGAYAVELPAG 341

Query: 357 EDPDSFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPD +++ +G  AF          L    ++R   N    TP++R E++  +   +  I
Sbjct: 342 NDPDEYVQEHGGDAFSDYVQEHRQDLPSFAYQRARRNGVLETPEDRVEVQREIIESVARI 401

Query: 416 KDQKLRYYYSQAIRD--------RLQQLFQKYITEHSGYGRYWKKNARHRDQK------- 460
            D  LR  Y     +          + L ++         R  K+  + + ++       
Sbjct: 402 PDPNLRREYVAHTSEVTGVPDSDLFRMLEEEREQMERRAQRQRKREQKRQQRQAEEGASP 461

Query: 461 -----------GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH-PAILQEQYQELADI 508
                      G S     S+  K          E  L   ++ +   ++      +A  
Sbjct: 462 SGEQAAPPDRNGASPPPPNSTTGKTASGPALLPEERVLFRLMLENGRRMVSLVLGHMALD 521

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA-GLWSATT 567
            +     +         + E     P++I          +L   +     +A   W+   
Sbjct: 522 EFSEGAPRDFARAFAEMY-EDGTVRPQQILNGEHGEALQQLGASVMMDEHEASEHWAQKE 580

Query: 568 EANIVDVRQGYQQALAL---YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI---L 621
           + ++  +     +A      + +   +    E + +++ Q + +G  E+   L      L
Sbjct: 581 DISVPHLNDRPYEAARSAMKFLKMDRVDEAIEAVRERMYQASQQGADEEVQRLQQKMMSL 640

Query: 622 HEVHIQIHQIESQE 635
            E+   I + E  E
Sbjct: 641 QELRKGIKRGEFLE 654


>gi|94311543|ref|YP_584753.1| DNA primase [Cupriavidus metallidurans CH34]
 gi|93355395|gb|ABF09484.1| DNA primase [Cupriavidus metallidurans CH34]
          Length = 613

 Score =  353 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 173/653 (26%), Positives = 289/653 (44%), Gaps = 59/653 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI+DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPQSFIQDLLNRVDIVDVVGKYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP-----KIEKKEKIQTDL 117
           +CF C   G  + FL    G S+ ++V+ LA   G+ +P         +  +++     L
Sbjct: 57  HCFGCGAHGSAIGFLMEYSGQSYPDAVRELAQSVGLSVPEERNSLPPAQRAEQQARSLAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              +  ATDF+   L+     +   YL  RG+       F LGYAPD    L        
Sbjct: 117 TDAMTRATDFYKKQLRG--APQAIQYLKGRGLTGEIAAHFGLGYAPDDWQGLETVFGSYR 174

Query: 178 FSEE--------KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
                        +IE+    D D     YDRFR+R++FPIR+++G VI FGGR + +GE
Sbjct: 175 DDAIAGPLVEAGLLIESQEKRDADGKPRRYDRFRDRIMFPIRNTKGNVIGFGGRVMGQGE 234

Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289
             KYLNSPET LF KG  LY  F A + ++           + ++++VEGYMDV++L Q 
Sbjct: 235 P-KYLNSPETPLFSKGTELYGLFEARHAIR----------ENGYVLVVEGYMDVVALAQL 283

Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
           G  N V++LGTA T   ++ L + +  +V  FDGD  G RAA +A++  L H+     + 
Sbjct: 284 GFANAVATLGTACTPVHVQKLMRQTDAVVFSFDGDAAGRRAARRALEACLPHVADNKTIR 343

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           F+ L    DPDS++R  G  AF + +  ++PL   L +  TE++    P+ RA  +   K
Sbjct: 344 FLFLPAEHDPDSYVREEGTDAFARQVQNAMPLSRFLLQIVTEDQDLRQPEGRARAQYEAK 403

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             +  +    LR    + + D         I    G G    +  R    +  ++R   +
Sbjct: 404 PLLQAMPAGGLRLQIVRELAD-TTSTTPAEIEAICGLGSDSSRVGRFAQPRPRARRQAPT 462

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDF 526
            L            E  ++  L+ +P++      + A     + +    + L   + +  
Sbjct: 463 GL------------EQRVIQLLMCYPSLAARLDGD-ARALLLDPQHSGSEALGYLVSACD 509

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             Q         ++L +  + ++       V          E         +  A+    
Sbjct: 510 GIQGEVNFAAFSEQLAQTPYADVYASARTAV-------LREEIEEEPATHEFDGAVHKLL 562

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               L R+++ +E  ++  TA  + E  A  + +  EV  +  Q+  + A +E
Sbjct: 563 -AEPLEREQKALEAMVSAGTA--DEETKARYLWLSREVQRR-RQMGWRPAAME 611


>gi|145633516|ref|ZP_01789245.1| DNA primase [Haemophilus influenzae 3655]
 gi|144985885|gb|EDJ92493.1| DNA primase [Haemophilus influenzae 3655]
          Length = 593

 Score =  353 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 170/633 (26%), Positives = 287/633 (45%), Gaps = 55/633 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPRPFIDDLLTKSNIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTDL 117
           +CF C   G+ +SFL       F+E+++ LAA+AG+ +P         K +   + + +L
Sbjct: 60  HCFGCGAHGNAISFLMDYDKLEFVEAIEELAAMAGLEVPYEKRANNSGKPQANYQTKRNL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             L++    F+   L    + +   YL +RG+ +  I+ F++G+ P++  ++        
Sbjct: 120 YELMQEIAAFYQSQL--PLNTQAQEYLQQRGLSAEIIKRFQIGFVPNAMDTVLRKFGVNR 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
             ++K+IE G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLNSP
Sbjct: 178 EEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ETI +HKG  LY  + AL             +    +++VEGYMDV++L Q GV   V+S
Sbjct: 236 ETITYHKGNELYGLYEALQA----------NDEPKQLLVVEGYMDVVALAQFGVDYAVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGT+ T  Q++L+++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  GE
Sbjct: 286 LGTSTTSEQIQLMFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGE 345

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD++IR YGK  FE+ I  +  L + ++   +    F+T + R +L       I  I  
Sbjct: 346 DPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIRQIPG 405

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           + LR      +  +L    Q  +              +        +  M          
Sbjct: 406 EMLRLSLRNMLAQKLGIFDQTQLENLIPKQLEQANTQQKVANNKIKKTPM---------- 455

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                    ++  L+ +P +++   +             ++   L +   +++     +I
Sbjct: 456 -------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQI 507

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +      +   L+ L                +  D+   + Q      R   +   + +
Sbjct: 508 LEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIERD 554

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           IE  IA+   +G   +   ++  L     Q  +
Sbjct: 555 IEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587


>gi|145638552|ref|ZP_01794161.1| DNA primase [Haemophilus influenzae PittII]
 gi|145272147|gb|EDK12055.1| DNA primase [Haemophilus influenzae PittII]
 gi|309750057|gb|ADO80041.1| DNA primase [Haemophilus influenzae R2866]
          Length = 593

 Score =  353 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 172/634 (27%), Positives = 291/634 (45%), Gaps = 55/634 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       F+E+++ LAA+AG+ +P         K++   + + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFVEAIEELAAMAGLEIPYEKRANHSGKLQANYQTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L++    F+ + L    + +   YL +RG+    IE F++G+ P++  ++       
Sbjct: 119 LYELMQEIATFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+IE G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLNS
Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PETI +HKGK LY  + AL             +    +++VEGYMDV++L Q GV   V+
Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T  Q++L+++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD++IR YGK  FE+ I  +  L + ++   +    F+T + R +L       I+ I 
Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR      +  +L    Q  +              +        +  M         
Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     ++  L+ +P +++   +             ++   L +   +++     +
Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +      +   L+ L                +  D+   + Q      R   +   + 
Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +IE  IA+   +G   +   ++  L     Q  +
Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587


>gi|171320195|ref|ZP_02909255.1| DNA primase [Burkholderia ambifaria MEX-5]
 gi|171094547|gb|EDT39601.1| DNA primase [Burkholderia ambifaria MEX-5]
          Length = 623

 Score =  353 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 174/655 (26%), Positives = 278/655 (42%), Gaps = 64/655 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------------DPKIEKK 110
           +CF C   G  + FL    G +F E+VQ LA   G+ +P              D      
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGGDYPAPVS 116

Query: 111 EKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS-- 168
           + + T L  ++ VA D++   L+         YL  RG+       F LGYAPD   +  
Sbjct: 117 KSVATALSDVMSVACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLE 174

Query: 169 -LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
                 R +   E  ++      D    A  YDRFR R++FPIR+ +GQVI FGGR L  
Sbjct: 175 TAFPDYRDESLVEAGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLGS 234

Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
           GE  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L 
Sbjct: 235 GEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALA 283

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           Q G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A++  L H      
Sbjct: 284 QLGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRT 343

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
           + F+ L    DPDS++R +G  AF + +  ++PL   L       ++ + P+ RA+    
Sbjct: 344 IRFLFLPSEHDPDSYVREFGAHAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFD 403

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
            K  +  +    LR        DRL   F++         R      +            
Sbjct: 404 AKPLLQALPANALRAQIMHMFADRLDIPFEEVAALSDVDARIAAPARQ------------ 451

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
                     ++ +  E   L TL+ HP I  +   E          + +L++ +     
Sbjct: 452 ---APPRSERRRVTDSEKRALRTLVMHPRIATQLDDEQLATLRALPRIGELFAEVVEHAR 508

Query: 528 EQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ 579
                     L + +        + E+ +++   D  VRD  L +   E      R+  +
Sbjct: 509 ALGDGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQER 568

Query: 580 ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                 QA  L  R+     + + + +Q        E  +   L     ++  ++
Sbjct: 569 IAGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 621


>gi|68249129|ref|YP_248241.1| DNA primase [Haemophilus influenzae 86-028NP]
 gi|145635387|ref|ZP_01791089.1| DNA primase [Haemophilus influenzae PittAA]
 gi|148825194|ref|YP_001289947.1| DNA primase [Haemophilus influenzae PittEE]
 gi|68057328|gb|AAX87581.1| DNA primase [Haemophilus influenzae 86-028NP]
 gi|145267393|gb|EDK07395.1| DNA primase [Haemophilus influenzae PittAA]
 gi|148715354|gb|ABQ97564.1| DNA primase [Haemophilus influenzae PittEE]
          Length = 593

 Score =  353 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 173/634 (27%), Positives = 290/634 (45%), Gaps = 55/634 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       FIE+++ LAA+AG+ +P         K +   + + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L++    F+ + L    + +   YL +RG+    IE F++G+ P++  ++       
Sbjct: 119 LYELMQEIATFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+IE G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLNS
Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PETI +HKGK LY  + AL             +    +++VEGYMDV++L Q GV   V+
Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T  Q++L+++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD++IR YGK  FE+ I  +  L + ++   +    F+T + R +L       I+ I 
Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR      +  +L    Q  +              +        +  M         
Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     ++  L+ +P +++   +             ++   L +   +++     +
Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +      +   L+ L                +  D+   + Q      R   +   + 
Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +IE  IA+   +G   +   ++  L     Q  +
Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587


>gi|127511930|ref|YP_001093127.1| DNA primase [Shewanella loihica PV-4]
 gi|126637225|gb|ABO22868.1| DNA primase [Shewanella loihica PV-4]
          Length = 601

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 179/630 (28%), Positives = 304/630 (48%), Gaps = 66/630 (10%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PR+FI +L+    I +LI   V   +   N       ACCPFH EK+PSF  +  K 
Sbjct: 27  MAIPREFINELVARTDIVDLIDAKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 81

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   G+ + F+       F+++++ LA   G+ +P      +++++ +  DL +
Sbjct: 82  FYHCFGCGAHGNAIDFVMEYDRLDFVDAIEELAGRLGLEVPREQGTGKRRDEGLSRDLYQ 141

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A+ +F   LK   DK+    YL  RG+    IE F +G+APD    L    RQ   
Sbjct: 142 LMEEASRYFQSQLKQHTDKQKVLDYLAHRGLSDEVIEHFNIGFAPDGWDGLLGRYRQNQD 201

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +++K++ AG++I+ D+    YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 202 AQDKLLTAGMVIENDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 259

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +            S I++VEGYMDV++L Q GV   V+SL
Sbjct: 260 TPIFHKGYELYGLYELKQRHRDP----------SQILIVEGYMDVVALTQFGVDYAVASL 309

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  ++ C+DGD  G  AA++A++  L  L PG++V F+ L +GED
Sbjct: 310 GTSTTADQFQLLLRSAKEVICCYDGDKAGTEAAWRALETALPLLKPGDQVKFMFLPQGED 369

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK AFE+LI E+  L + L+             ++  L     + I  ++D 
Sbjct: 370 PDSLVRQIGKPAFEQLIAEAKLLPEFLFDTLASRY----GTDKGTLAKQAMSLIEKVQDT 425

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L+    + +  +L     + +    G+ R              + + +Q+  +KG+ + 
Sbjct: 426 VLQSLLLENLAYKLGMNSAEELQRKLGFKRI------------DANKPLQNKALKGRGTP 473

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV------EQKYF 532
                    +  L+ HP         L +       L+ +                 +  
Sbjct: 474 L-----RLAIALLVQHPH--------LGNNLPVQPALKHIKMAGIDLLSLLLDRTRAEKV 520

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              ++ ++       + LK+L +            +    +++Q +++AL ++   + + 
Sbjct: 521 NSAQLLEQFRGDDQLDTLKKLAQW---------EHQVADENLQQEFKKAL-IWLNNQYIE 570

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILH 622
           ++ +E+   + Q   K E  +   LI+++ 
Sbjct: 571 QRYQEL--SLKQHHTKEERMQLKKLIAVIQ 598


>gi|331006376|ref|ZP_08329685.1| DNA primase [gamma proteobacterium IMCC1989]
 gi|330419800|gb|EGG94157.1| DNA primase [gamma proteobacterium IMCC1989]
          Length = 676

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 175/637 (27%), Positives = 284/637 (44%), Gaps = 76/637 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + P+ FI DLL  + I ++I   V   +   N     Y ACCPFHDEKTPSF  +  K F
Sbjct: 4   SIPQPFIDDLLERVDIVDVIDSRVKLKKTGKN-----YSACCPFHDEKTPSFSVSPDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK-------EKIQ 114
           +YCF C   G+ + F+      SF E++  LA +AGV +P    K  +K       EKI+
Sbjct: 59  FYCFGCGASGNSIGFIMDYERLSFPEAIDSLAKVAGVEVPREHTKDPQKRAQNEAQEKIR 118

Query: 115 TDLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
             L  L+E   D++   L+ + +      YL  RG+     + F +GYAP    +L + L
Sbjct: 119 KLLFSLMEQTNDYYQLQLREHPQKNTPVNYLKNRGLSGQIAKDFGVGYAPPGWDNLIKTL 178

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
                 ++ ++E G+LI+ ++    YDRFR R++FPIR SRG+VI FGGR L   E  KY
Sbjct: 179 ATSNEKQDLLLEGGMLINNEDKGRLYDRFRERIMFPIRDSRGRVIGFGGRVL-NDEKPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +F KGK LY  + A    ++  R          +++VEGYMDV++L Q G++ 
Sbjct: 238 LNSPETPIFFKGKELYGLYEARQAYRQLPR----------VLVVEGYMDVVALAQYGIRY 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V++LGTA +E  LR+ +K +  +V CFDGDD G +AA +A++  +  +  G ++ F+ L
Sbjct: 288 GVATLGTACSEEHLRIAFKYTNEVVFCFDGDDAGRKAARRAMENSITSMEDGRQIKFLYL 347

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             GEDPD+ +R  G   F KLI  + PL + L++   ++    T + RA L       ++
Sbjct: 348 PEGEDPDTLVRQIGDEKFTKLIEGASPLENFLFEELGQSFDTQTMEGRARLCKIAAPMLD 407

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYIT------EHSGYGRYWKKNARHRDQKGPSQRLM 467
            +     R      + +R Q      +       + +      + ++ +     P++ + 
Sbjct: 408 QLPRGVYRELMFNQLANRTQLSMDALMRLLEELPKQANPAAAPQISSPNHIATEPAKNIT 467

Query: 468 ---------------------------------------------QSSLVKGKLSKKPSL 482
                                                        Q++  K         
Sbjct: 468 AETNHTKQNDEPRFIEAHDYDGHDGYDYDEESPPNARLSSDWHSDQNTPAKNNTPASSHQ 527

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
                L  L+  P +  E   ++ D+R    E   L + L     ++  F   +I     
Sbjct: 528 LTRQALSLLLFQPKLAVE-ANDIDDLRDSREENLVLLTNLIDLLQQRPEFTSGQIIGYWQ 586

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
                E  K+L   +  + ++    E    + +  + 
Sbjct: 587 GTYGAEASKKLQTLINQSDVFHHAQELTQTEEKHVFN 623


>gi|319440600|ref|ZP_07989756.1| DNA primase [Corynebacterium variabile DSM 44702]
          Length = 658

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 135/667 (20%), Positives = 252/667 (37%), Gaps = 59/667 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +    PI  ++G+YV                  PF DEKTPSFH   +KG+
Sbjct: 8   RIPDTDIAAIREQTPIEEVVGEYVQLTPGG----VDSMKGLSPFKDEKTPSFHVRPNKGY 63

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           ++CF+    GD  SFL  +   +F E+V++ A   G  +      P    +   +  LI 
Sbjct: 64  FHCFATGEGGDVFSFLMKMEHVTFPEAVEQCAERIGYHINYEGGGPVNRVEPGTRQRLIA 123

Query: 120 LIEVATDFFHHSL-----KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
               A +F+         ++   ++    L +RG     +E F  GYAPD   +L + L 
Sbjct: 124 ANRAAQEFYRARFLDMDSRDPGAEKARAMLRDRGFSDELVEQFGCGYAPDGWDTLTKVLL 183

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKY 233
           ++GFS +++ +AGL      +    DRF  RL++PIR+S G VI FG R L + +   KY
Sbjct: 184 RRGFSFKELEDAGLSR--MGNRGPIDRFHRRLLWPIRNSAGDVIGFGARKLFEDDKLGKY 241

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           +N+PET+L+ K K L+    A   +          ++    ++VEGY DV++L  AGV  
Sbjct: 242 MNTPETLLYKKSKVLFGLDRAKKSI----------SADHQAVVVEGYTDVMALHAAGVTT 291

Query: 294 VVSSLGTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
            V++ GTA  E  L++L +           I+  FDGD+ G +AA +A +          
Sbjct: 292 AVAACGTAFGEEHLQMLRRFMLDDQFFRGEIIYTFDGDEAGQKAAMRAFEGDQKFTG--- 348

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
           R    +   G DP       G  A  +++   +P+ + + +        +  D R +   
Sbjct: 349 RSYVAVAPDGMDPCDLRMERGDAAVREMVASRIPMFEFVIRTIIRGYDTHHVDGRVDALR 408

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA------------ 454
            +   +  I+D  LR  Y++     L       +            +             
Sbjct: 409 RVVPVLAGIRDDALRDEYARQASGWLSWSDPSEVVNQVRKAARHSGHRDAVPELREGLAR 468

Query: 455 ---RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
              R   ++  +     S L +             +L  ++  P ++ +    L    ++
Sbjct: 469 ANRRAAAEQTQAADAPVSLLQRPDPEDVYLRPVREVLKLMLQEPGLVGKDADGLLTDSFE 528

Query: 512 NNELQKLWSFLFSDFVEQK-YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
           +     + + +                   +       + + +  ++             
Sbjct: 529 HPTYMAVATAIQEAGGVGSVTAGGAGWLDAVSAATKDPMCRAVISELAVEEPRCRAERLP 588

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA---KGEAEKTAILISILHEVHIQ 627
                  Y +A+      R +  +  E++ ++ ++       E ++     + L  +   
Sbjct: 589 F------YARAVVARMEERWVGAEIAELKSRMQRMRPDLGAAEKKEYNATFADLMALEKY 642

Query: 628 IHQIESQ 634
              ++ Q
Sbjct: 643 RRTLQEQ 649


>gi|319775547|ref|YP_004138035.1| DNA primase [Haemophilus influenzae F3047]
 gi|329122410|ref|ZP_08250997.1| DNA primase [Haemophilus aegyptius ATCC 11116]
 gi|317450138|emb|CBY86352.1| DNA primase [Haemophilus influenzae F3047]
 gi|327473692|gb|EGF19111.1| DNA primase [Haemophilus aegyptius ATCC 11116]
          Length = 593

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 172/634 (27%), Positives = 291/634 (45%), Gaps = 55/634 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       F+E+++ LAA+AG+ +P         K +   + + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFVEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L++    F+ + L    + +   YL +RG+ +  IE F++G+ P++  ++       
Sbjct: 119 LYELMQEIATFYQNQL--PLNSQAQEYLQQRGLSAEIIERFQIGFVPNAMDTVLRKFGVN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+IE G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLNS
Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PETI +HKGK LY  + AL             +    +++VEGYMDV++L Q GV   V+
Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T  Q++L+++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD++IR YGK  FE+ I  +  L + ++   +    F+T + R +L       I+ I 
Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR      +  +L    Q  +              +        +  M         
Sbjct: 405 GEMLRLSLRNILAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     ++  L+ +P +++   +             ++   L +   +++     +
Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +      +   L+ L                +  D+   + Q      R   +   + 
Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +IE  IA+   +G   +   ++  L     Q  +
Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587


>gi|120553593|ref|YP_957944.1| DNA primase [Marinobacter aquaeolei VT8]
 gi|120323442|gb|ABM17757.1| DNA primase [Marinobacter aquaeolei VT8]
          Length = 583

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 179/612 (29%), Positives = 289/612 (47%), Gaps = 36/612 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ F++DLL  I ++ LIG  +   +   N     Y ACCPFHDEKTPSF+    KGFY
Sbjct: 5   IPQRFVEDLLDRIDLAELIGSRITLKKAGAN-----YKACCPFHDEKTPSFNVRPDKGFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD +SF+    G  F E+V+ LA  AG+ +P  D   +++ +    L   +E
Sbjct: 60  HCFGCGAHGDAISFVREFEGLGFTEAVEELAKRAGLEVPY-DRAAKQEMQQARTLTDALE 118

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  F+H +L + +      YL +RG+D + I+ +++G+AP +  +L +   +   +   
Sbjct: 119 FANRFYHSALTSQQGGYARDYLKQRGLDENIIQQYQIGFAPGTGTALYDAAPKDLKAPLI 178

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                     D      D FRNR++FPIR++RG+ IAFGGRTL   +  KY+NSPE+ +F
Sbjct: 179 ETRT----VSDQYGRPRDLFRNRVMFPIRNTRGKTIAFGGRTL-GDDKAKYINSPESDVF 233

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           HK + +Y  F A   +++             +++VEGYMDV++L Q G+   V++LGTA 
Sbjct: 234 HKSREIYGLFEARQAIRQL----------DKLLVVEGYMDVIALAQHGIHYAVATLGTAT 283

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
            +  L  L +    IV CFDGD  G RAA +A++  L  +  G  + F++L  GEDPD+ 
Sbjct: 284 NQDSLTALLRHVRHIVFCFDGDQAGFRAADRAMENALELMADGLHLQFLMLPEGEDPDTL 343

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +R  G  AF+K I  + P    L+ R++E      P+ R EL   ++  +N +    LR 
Sbjct: 344 VRKEGPDAFQKRIEGATPFSRYLFDRQSEGLDLQLPEHRGELRARVEPLLNKMPRSTLRD 403

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                +        +           Y  +  R   Q  P++  +   L K         
Sbjct: 404 AMWHEMLRLCGG--RNQWQNRQQGRNYKARGWRGEGQSRPTEERIDVKLSKDST------ 455

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
               L L L+  P +  E    LAD         +   +L  + ++ +  L   +     
Sbjct: 456 ----LCLALLEAPELATEVK-ALADSTRQLERAGRFARWLLEEKIQTRKTLVAGLATNKQ 510

Query: 543 ERG-FGELLKQLDRQ-VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            R  F  L  +L+    R++ L +A    +  +     Q+   L +    LS ++ E  +
Sbjct: 511 ARDRFYNLFDELEHIPARESTLAAARELLSPNEEAARQQRLATLLRNLAQLSPEEREELR 570

Query: 601 QIAQVTAKGEAE 612
            ++  T   +AE
Sbjct: 571 TLSAGTLNPKAE 582


>gi|194364101|ref|YP_002026711.1| DNA primase [Stenotrophomonas maltophilia R551-3]
 gi|194346905|gb|ACF50028.1| DNA primase [Stenotrophomonas maltophilia R551-3]
          Length = 579

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 182/625 (29%), Positives = 275/625 (44%), Gaps = 50/625 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI DLL    I  ++G  V   R+       +Y A CPFHDE++ SF  + +K F
Sbjct: 3   RIPDAFIDDLLARSDIVEVVGSRVPLKRQGK-----EYAARCPFHDERSASFTVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRL 120
           Y+CF C   G  +SFL       F+++V  LA  AG+ +P   +P+  +++    +L   
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEVPRSENPRSPQQQDDSRELYSA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E AT FF  +L+ +   +   YLD RG+D      F++GYAPD    LR+ L +     
Sbjct: 118 LEAATKFFQSNLQGSD--KARSYLDGRGVDEENRARFQIGYAPDGYSGLRDALGKDERRM 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + +  AGL    D     YD+FR+R++FPI   RG+VIAFGGR   K +  KYLNSPET 
Sbjct: 176 KLLDRAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRVFEKDDGPKYLNSPETA 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LY  +      QK  R          +I+VEGYMDV+SL Q GV   V++LGT
Sbjct: 235 LFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAVATLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T     LL++ +P +  CFDGD  G RA +KA++ VL  +  G +  F+ L  GEDPD
Sbjct: 285 ATTPDHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPD 344

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           + +R  G  AF + + ++ PL    +   T   +  T D +A L    K  +  I D   
Sbjct: 345 TIVRKEGAEAFNERLKQATPLSQFFFDELTREINLGTLDGKARLAERAKPMLAQIPDGAF 404

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                Q +                G  +  +     R      Q + + SLV+G      
Sbjct: 405 GDLMKQQLAQLTG---------LGGNAQAARAPMPQRQPSRAIQPVAKRSLVRGA----- 450

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                  +  L+  P++      +          ++     L     ++       + + 
Sbjct: 451 -------IAVLLQQPSLALTLGGKHHFQGLRLPGVEL-LLELLDLVEQRPDISTGALLEH 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
              R     L  L  Q         T E            A+A  ++  L+ R +E + K
Sbjct: 503 FDGREEQASLHTLAAQTMPGDDAMWTQE---------LHDAVAQLEKQLLVQRLEELLAK 553

Query: 601 QIAQVTAKGEAEKTAILISILHEVH 625
           Q  Q     +  +   L+     + 
Sbjct: 554 QRQQGLDDTDKYELRELLKARAGLR 578


>gi|332528541|ref|ZP_08404529.1| DNA primase [Hylemonella gracilis ATCC 19624]
 gi|332042052|gb|EGI78390.1| DNA primase [Hylemonella gracilis ATCC 19624]
          Length = 659

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 174/688 (25%), Positives = 287/688 (41%), Gaps = 83/688 (12%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P  FI++LL    + +++G+YV   +   N     +   CPFH EK+PSF  + +K 
Sbjct: 1   MAIPSTFIQELLARADVVDIVGRYVQLKKGGAN-----FMGLCPFHAEKSPSFTVSPTKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------KIQ 114
           F++CF C   GD + FL    G SF+E+VQ LA   G+ +P  D   +++E      + Q
Sbjct: 56  FFHCFGCGKHGDAIGFLMEHTGASFVEAVQDLAQQYGLQVPEDDSTPQQRERAAAQRQKQ 115

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L   +E A   +   LK +   R   YL  RG+       F LGYAP+   SL     
Sbjct: 116 ATLSETLEKAGAAYRKHLKGS--PRAIGYLKGRGLSGEIALRFGLGYAPEGWRSLASVF- 172

Query: 175 QKGFSEEKIIEAGLLIDG--------DNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
              + +  ++E+GL+I             A  YDRFR+R++FPIR+ +G+ I FGGR L 
Sbjct: 173 -PSYDDPLLVESGLVISSEGEGGATAKGEAKRYDRFRDRIMFPIRNVKGECIGFGGRVL- 230

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
             E  KYLNSPET +F KG  LY  + A N ++           + ++++ EGYMDV++L
Sbjct: 231 GDEKPKYLNSPETPVFSKGLELYGLYEARNAIR----------DAGYVLVTEGYMDVVAL 280

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
            Q G  N V++LGTA T   L+ L++ +  +V  FDGD+ G RA+ +A++  L +     
Sbjct: 281 AQLGFPNAVATLGTACTPDHLQKLFRFTDSVVFSFDGDEAGRRASRRALEAALPYASDTR 340

Query: 347 RVNFVL---LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
            V F+      +  DPDS+IR +G+ AF   + E+ PL   L     E    ++ + RA 
Sbjct: 341 TVRFLFLPTQPKKHDPDSYIREHGREAFAHCVSEATPLSRFLIDSAREGCDLSSAEGRAR 400

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           L +H +     + D  L+      I   +Q   Q+  +  +      +++      +   
Sbjct: 401 LGVHAQPLWEALPDGALKRQLLGEIASLVQLDAQELGSLWADARARSQRHGAGPGPRDAG 460

Query: 464 QRLMQS-------------------------------SLVKGKLSKKPSLREAALLLTLI 492
               +                                +    + +++   R    +  L+
Sbjct: 461 DSAARDGGTASASRSPRSPRSSEGYAAAGRGYRSQPGTGNARRGARQLPQRADHAVRLLL 520

Query: 493 NHPAILQEQYQELADIRYDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQRLC---ERGFGE 548
            H  + +    E   +      +   L S+L +   EQ       + Q L    E     
Sbjct: 521 AHSGLWEHLSSEEHALLCGLPGQHGALLSWLEAWLHEQGPQPWAVLRQALQAHAEATADS 580

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
              + D  +         ++    D      Q L    +  L+ + K E    +A    +
Sbjct: 581 FEPETDLPLSTVAQRLMNSDLMPTDDAAEAGQELRSLLKPMLIEQLKAEQTPDLAAHHPE 640

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636
                         E+  +I  + S  A
Sbjct: 641 -----------RYREIQERIKNLSSNAA 657


>gi|15603105|ref|NP_246177.1| DNA primase [Pasteurella multocida subsp. multocida str. Pm70]
 gi|18202820|sp|Q9CLI9|PRIM_PASMU RecName: Full=DNA primase
 gi|12721596|gb|AAK03324.1| DnaG [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 582

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 177/631 (28%), Positives = 284/631 (45%), Gaps = 58/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I  L+   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRTFIDDLLAKTDIVELVNSRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----KIEKKEKIQTDL 117
           Y+CF C   G+ +SFL       F+E+++ LA + G+ +P  +       +   + + +L
Sbjct: 59  YHCFGCGAHGNAISFLMEYDKLEFVEAIEELAGMLGLEIPRENKPHFHGKQINLQTKRNL 118

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             L++    F+   L      +   YL +RG+    I  F++G+ P+S  ++ +   Q+ 
Sbjct: 119 YELMQEIAQFYQQQLAQHIPAQS--YLQQRGLSPEVISRFQIGFVPNSFDAVLQRFGQQK 176

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
             ++K+ + G+L         YDRFR+R++FPIR  RG+ IAFGGR L   E  KYLNSP
Sbjct: 177 EDQQKLFDLGMLSRS-EQGKIYDRFRHRIMFPIRDRRGKTIAFGGRVL-GDEKPKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+  +HKG  LY  + AL              S   +++VEGYMDV++L Q GV   V+S
Sbjct: 235 ESATYHKGNELYGLYEALQA----------NESPEMLLVVEGYMDVVALAQFGVDYAVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA T  Q++LL++ + + + C+DGD  G  AA++A +  L +L  G ++ FV L  GE
Sbjct: 285 LGTATTAEQIQLLFRSTEQAICCYDGDRAGREAAWRAFENALPYLEDGRQLKFVFLPDGE 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSFIR +GK +FE+ + ++L L + L+        F++ + + +L       I  I  
Sbjct: 345 DPDSFIRQHGKASFEQYMQKALSLSEFLFTSLAPQVDFSSKEGKTKLAALAVPLIKKIPG 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             LR      +  +L  L Q  +          K  A  +  K                 
Sbjct: 405 DMLRLSLRNTLAQKLGILDQAQLESLIPSYSEMKITASPQPVKRTPM------------- 451

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                    L+  L+ +P + Q     L+ +R  N     L   L +   E+      +I
Sbjct: 452 -------RVLIGLLLQNPELAQLVPD-LSPLRTLNEPGLDLLEKLTALCQEKVGITTGQI 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +   +    + L+ L              +  I +  +   + L              E
Sbjct: 504 LEYWRDTEHSKALEILASWN------HLVEDTQIEETFKSTLRYLYFQLIEH-------E 550

Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627
           I+  IA+  ++G    +   L  +L +   +
Sbjct: 551 IDLLIAKDRSEGLNMNERKKLTQLLVKKQQK 581


>gi|308180762|ref|YP_003924890.1| DNA primase DnaG [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308046253|gb|ADN98796.1| DNA primase DnaG [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 625

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 142/650 (21%), Positives = 269/650 (41%), Gaps = 49/650 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +   + I++ IGQYV   +   N      +  CPFH+E+TPSF  N+ K  
Sbjct: 4   RIPEEKVEQVRSAVNIADFIGQYVQLKKAGKNL-----FGLCPFHEERTPSFSVNEQKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           ++CFSC   G+  SF+  L   SF E+V ++A    + LP            K++ Q DL
Sbjct: 59  FHCFSCGRGGNVFSFIMDLENLSFPEAVVKVADFGHIDLPASYTAQSQPAAPKDQQQADL 118

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           ++L   +   + H L      +    YL ERG+D   I+ F +GYAP +   L +  ++ 
Sbjct: 119 LKLYADSAKMYQHILVNTELGEPALKYLHERGLDDETIKTFGIGYAPAN-QLLLDFFKEH 177

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235
               + + ++GL I+        DRF +R++FPI+ + G+VIAF GR L K     KYLN
Sbjct: 178 QTDYQLLRQSGLFIENQAGD-LRDRFVDRVLFPIKDASGRVIAFSGRILKKSPNEPKYLN 236

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LF+K   L+NF  A   ++              ++L EG+MDV++  ++G+QN V
Sbjct: 237 SPETKLFNKRSVLFNFDLARGPIR----------QQKSVVLFEGFMDVIAAYRSGIQNGV 286

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GT+LT+ Q+ +L +++  + +C+D D PG +A  +A+ L+  +      V  + +  
Sbjct: 287 ASMGTSLTDEQIYMLERVTDTLYVCYDSDMPGQKATDRALKLLGGNSRLNLGV--IQMPD 344

Query: 356 GEDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
           G DPD ++R  G+  F +              +    + +     ++      +   +  
Sbjct: 345 GMDPDEYLRAQGQEKFVQVFEDGKQTPTAFEMQYLKHDLNLQNTPDQLTYLQAVLQQLAQ 404

Query: 415 IKDQKLRYYYS-----------QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           +     +  Y              ++ +L+ L  +      G+    +            
Sbjct: 405 LSSSVEQDLYLNQLVAEFDLDKDDLKQQLRSLVGQQAVRRGGHSDEPQVAPPPAPAPLGP 464

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                          +    E  LL  L+N   +       +A   + ++  Q++  +  
Sbjct: 465 PPATVDGSTNSGPLSRVEKAERLLLYRLLNDHDVWLRVM-AIAGFHFVHDSYQQILVYAE 523

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           + F     F        + +     ++  L+             +      ++     + 
Sbjct: 524 AYFKTHNQFDLGNFTDFMTDSDLQPVVTSLE-----------FMDVANESSKEEIADLVN 572

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +    + L  Q    + ++      G  +    L   L +++ Q  Q++ 
Sbjct: 573 VIMNQQPLVEQINSKKAELTAAKQIGNRDLVQQLTLALIDLYRQQQQVQR 622


>gi|296387083|ref|ZP_06876582.1| DNA primase [Pseudomonas aeruginosa PAb1]
          Length = 443

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 154/444 (34%), Positives = 234/444 (52%), Gaps = 21/444 (4%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I  ++   +   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVEVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLIR 119
           YCF C   G+ L F+       F ++V+ LA  AG+ +P  +        ++   + L  
Sbjct: 60  YCFGCGAGGNALGFVMDHDQLEFPQAVEELAKRAGMDVPREERGGRGHTPRQPTDSPLYP 119

Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+  A +F+  +LK+    K    YL  RG+       F LG+AP    +L +HL     
Sbjct: 120 LLSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNL 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             + +++AGLL++  ++   YDRFR+R++FPIR SRG++IAFGGR L   +  KYLNSPE
Sbjct: 180 QLKAMLDAGLLVENSDTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG+ LY  + A    +              I++VEGYMDV++L Q G++N V++L
Sbjct: 239 TPVFHKGQELYGLYEARQKNRDL----------DEIMVVEGYMDVIALAQQGIRNAVATL 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +E  ++ L++L P I+ CFDGD  G +AA++A++ VL +L  G RV F+ L  GED
Sbjct: 289 GTATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGED 348

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PDS +R  G+ AF   +  ++ PL +  +++        T + +A L       +  I  
Sbjct: 349 PDSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIPG 408

Query: 418 QKLRYYYSQAIRDRLQQLFQKYIT 441
             LR    Q + +      +    
Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQ 432


>gi|189347446|ref|YP_001943975.1| DNA primase [Chlorobium limicola DSM 245]
 gi|189341593|gb|ACD90996.1| DNA primase [Chlorobium limicola DSM 245]
          Length = 632

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 177/653 (27%), Positives = 283/653 (43%), Gaps = 42/653 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+  I D+     I ++I  YV       N     + A  PF  EKTPSF  +  K  Y
Sbjct: 2   IPQSVIDDIRQRADIVDVISDYVKLQPSGRN-----FKALSPFTQEKTPSFVVSPDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CFS    G+  SF+  +    F E+V+  A  AGV +     K +     +      + 
Sbjct: 57  KCFSTGKGGNVFSFIMEMERVQFPEAVEIAAKRAGVDISRFTAKEKGAGHEEDSRTATLR 116

Query: 123 VATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A   FHH+L     K+   Y   ERG+ +  I  F LGYAP+S   L    ++ G +E+
Sbjct: 117 WAARQFHHTLMGESGKKGLAYLAAERGLTAQTITSFGLGYAPESWEHLLGEAQRAGIAEK 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETI 240
           ++ E GL+       + YD FRNR+IFPI S  GQV+ FGGRTL    ++ KYLNSPE+ 
Sbjct: 177 QLAELGLVTANRQRNSVYDAFRNRVIFPIFSVGGQVVGFGGRTLRNDPDTPKYLNSPESS 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K K LY    A   ++K          +   ILVEGYMDVL+L QAG+ N V+S GT
Sbjct: 237 MFEKSKLLYGMHAAKQEIRK----------TETAILVEGYMDVLALHQAGITNAVASCGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT +Q +++ + + R++  +D D  G ++    ID++L     G     V+L  G+DPD
Sbjct: 287 ALTRHQAKIMQRYTSRVLFIYDADPAGRKSMMSGIDILLSE---GIVPYVVMLPHGDDPD 343

Query: 361 SFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           SF+R  G+ AF +   E+    +D   +  TE+  F+ PD +A+    +   I  I D+ 
Sbjct: 344 SFVRREGREAFMRYTEENRLGFLDFQIRFFTESGDFDQPDTKAKAISAMGRTIALIPDRV 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y Q +  +L    Q             K+ A         +R   +         +
Sbjct: 404 RRELYMQELSGKLSISMQALRE------SAGKERAVKEPYTSKEERTATAQFRTQDTRSR 457

Query: 480 PSLREAALLLTLINH----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            ++ E   L  L+        +++        +   +   +++ + +   +        E
Sbjct: 458 VTILEKTFLKALLESALYGNGVIEFAASHEEMLELPHPAAREILAHMIERYRNSSGDPDE 517

Query: 536 EI-----HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--F 588
            I       R       +L   L      +  W   ++A     R+     L  +K    
Sbjct: 518 RIDVVTEISRFKSTEARDLASGLLIDQPVSSRWHEQSDAEREHARRCLTAFLDAFKNIIL 577

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE-AMIEG 640
             L R+KE + +++ +   + +      L   + E++  I +  +   AMI G
Sbjct: 578 EPLVRRKETVTEKLRR---EDDNNSAVELQKEIIEINATIKKTSADLGAMITG 627


>gi|254523315|ref|ZP_05135370.1| DNA primase [Stenotrophomonas sp. SKA14]
 gi|219720906|gb|EED39431.1| DNA primase [Stenotrophomonas sp. SKA14]
          Length = 579

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 182/625 (29%), Positives = 276/625 (44%), Gaps = 50/625 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI DLL    I  ++G  V   R+       +Y A CPFHDE++ SF  + +K F
Sbjct: 3   RIPDAFIDDLLARTDIVEVVGSRVPLKRQGK-----EYAARCPFHDERSASFTVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRL 120
           Y+CF C   G  +SFL       F+++V  LA  AG+ +P   +P+  +++    +L   
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMDVPRNENPRNPQQQDDSRELYSA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           ++ AT FF  +L+ +  ++   YLD RG+D      F++GYAPD    LR+ L +     
Sbjct: 118 LDAATKFFQKNLEGS--EKARSYLDGRGVDEENRARFQIGYAPDGYSGLRDALGKDERRM 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + +  AGL    D     YD+FR+R++FPI   RG+VIAFGGR   K +  KYLNSPET 
Sbjct: 176 KLLDRAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRVFEKDDGPKYLNSPETA 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LY  +      QK  R          +I+VEGYMDV+SL Q GV   V++LGT
Sbjct: 235 LFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAVATLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T     LL++ +P +  CFDGD  G RA +KA++ VL  +  G +  F+ L  GEDPD
Sbjct: 285 ATTPDHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPD 344

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           + +R  G  AF + + ++ PL    +   T   +  T D +A L    K  +  I D   
Sbjct: 345 TIVRKEGADAFNERLKQATPLSQFFFDELTREINLGTLDGKARLAERAKPMLAQIPDGAF 404

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                Q +                G     +     R      Q + + SLV+G      
Sbjct: 405 GDLMKQQLAQLTG---------LGGNAASARAPMPQRQPARTIQPVAKRSLVRGA----- 450

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                  +  L+  P++      +          ++     L     ++       + + 
Sbjct: 451 -------IAVLLQQPSLALTLGGQHHFQGLRLPGVEL-LLELLGLVEQRPDISTGALLEH 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
              R     L  L  Q       S T E            A+A  ++  L+ R +E + K
Sbjct: 503 FDGREEQASLHTLAAQTLPGTEASWTQE---------LHDAVAQLEKQLLVQRLEELLAK 553

Query: 601 QIAQVTAKGEAEKTAILISILHEVH 625
           Q  Q     +  +   L+     + 
Sbjct: 554 QRQQGLDDTDKYELRELLKARAGLR 578


>gi|282934649|ref|ZP_06339892.1| DNA primase [Lactobacillus jensenii 208-1]
 gi|281301224|gb|EFA93525.1| DNA primase [Lactobacillus jensenii 208-1]
          Length = 595

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 152/627 (24%), Positives = 273/627 (43%), Gaps = 40/627 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P DFI ++   I I ++I QYV  ++R       DY   CPFH EKTPSF  ++ K F
Sbjct: 4   RIPEDFINEVRNSINIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFTVSEDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+  SF+    G SF E+V  +A +A + +P      + + K  + L ++ 
Sbjct: 59  FKCFGCGKGGNVFSFMQYKEGLSFPEAVAEVAKMANLAMP---SGYQSEMKPLSPLKKVH 115

Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A DFFH   L +   +R   Y  ER +    +E F++GYAP+S + L   LR KG+ +
Sbjct: 116 QDACDFFHQVLLTSKAGERALNYAKERELSEDLLEHFQIGYAPNSDHLLLTFLRGKGYDD 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
             + ++GL      +   +DRFR+RL+FP+    G ++ F GR +S  +   KYLNSPET
Sbjct: 176 TVLAKSGLFSQN-ENGQLFDRFRDRLMFPLADEVGYIVGFSGRRISNNKELAKYLNSPET 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K K L++   A    +          +   ++L EGYMDV++  +AG++  ++S+G
Sbjct: 235 EIFNKSKVLFHLKEAKKAAR----------TEKHLVLYEGYMDVIAAYKAGIKTGIASMG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ LL ++S  I++ +DGD+PG  A  +A  +     + G +V  V L  G DP
Sbjct: 285 TSLTDDQVYLLKRISRNIIINYDGDEPGQHAIERASHMF--ETVGGFQVGVVSLPEGLDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG   ++  +  ++   D   KR     +F+   E+          I  + +  
Sbjct: 343 DEYVKKYGPERYQDEVKGAITPTDFFLKRLELKYNFSNDREKLAYLDEAVKLIAPLNNPV 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y   +  ++              GR  +   R + Q          + V    +  
Sbjct: 403 ERDLYVTKLAKKVGVSEDSLKVSLLREGRKLRVAERRKKQYDFEPEEQSKTQVATLHNAN 462

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           P+L    L    ++   +            + +    KL                   + 
Sbjct: 463 PALV--RLFYLFVHSEKVRNYLLDL--HFLFPDESYAKLAESWLDFEETHDNATINSFYD 518

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            + +         L   + +  + +   + +  +V       LA  K+     R+   ++
Sbjct: 519 FIPD--------DLKGIIDNMEMMTMPEDFSKEEVD----GLLASLKKLDT-QRKISNLQ 565

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHI 626
            Q+     + + ++    + ++     
Sbjct: 566 MQLQDAQRRQDEDQVLKTLEMIINAKR 592


>gi|120599856|ref|YP_964430.1| DNA primase [Shewanella sp. W3-18-1]
 gi|146292208|ref|YP_001182632.1| DNA primase [Shewanella putrefaciens CN-32]
 gi|120559949|gb|ABM25876.1| DNA primase [Shewanella sp. W3-18-1]
 gi|145563898|gb|ABP74833.1| DNA primase [Shewanella putrefaciens CN-32]
          Length = 574

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 177/627 (28%), Positives = 298/627 (47%), Gaps = 55/627 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+    I  LI + V   +   N     Y ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   G+ + F+       FI++++ LA   G+ +P      ++ +  +  DL +
Sbjct: 56  FYHCFGCGAHGNAIDFVMEYDRLDFIDAIEDLAGQLGLEVPREQGTGKRHDDGLSRDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A+ +F + L+  +DK+    YL  RG+    +E F +G+APD    L    RQ   
Sbjct: 116 LMEEASRYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +++K++ AG+LI  +++   YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 176 AQDKLLTAGMLI-ANDNGKRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +              +++VEGYMDV++L Q GV   V+SL
Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------DKVLIVEGYMDVVALAQFGVDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  +V C+DGD  G  AA++A++  L  L PG++V F+ L + ED
Sbjct: 284 GTSTTAEQFQLLLRSAKEVVCCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK AFE L+  ++ L + L+             +++ L       I  I+D 
Sbjct: 344 PDSMVRKIGKEAFETLMGSAIALPEFLFDTLATKY----GTDKSNLAKQAFILIEKIQDT 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L+    + +  +L     + + +  G+     K    +  KG    L            
Sbjct: 400 VLQNLLLENLAHKLGMNSSEDMKKKLGFSVKQTKTVAKQGLKGRGTPL------------ 447

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                    +  L+ HP +      + A        +      L  D   ++     ++ 
Sbjct: 448 ------RLAIALLVQHPLLGLGLPPQPALNHLQMPGIDL--LPLLLDLTREQRLNSAQLL 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++  +      L +L +            +    ++ + ++Q L ++   + + ++ +E+
Sbjct: 500 EQFRDNPHSGALHKLAQW---------DHQVADENLLEKFKQTL-VWLNNQYIEQRYQEL 549

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVH 625
              + Q   K E  +   LIS++  ++
Sbjct: 550 --SLKQTHTKEEKIQLQKLISVMKGLN 574


>gi|315169688|gb|EFU13705.1| DNA primase [Enterococcus faecalis TX1342]
          Length = 628

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 165/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++     I ++IGQYV   +   N     Y   CPFH+E++PSF   + K  
Sbjct: 4   RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           ++CF C   G   +FL  + G SF ESV+R+A +  + +        +     + + +  
Sbjct: 59  FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L++L   A + +HH L      +    YL ERG+    IE F++G+AP  R  L +  + 
Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230
           +   E     +GL +  DN  T  DRF  R++FPI   +G VIAF GR L        E 
Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF+K + L+NF  A   ++K           + ++L EG+MDV++  Q+G
Sbjct: 238 PKYLNSPETTLFNKRETLFNFDRARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V++ V+S+GT+LT  Q+R L +++  +V+C+DGD+ G++A  +AI L+  +      +  
Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQGNSHFDLSI-- 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           V +    DPD ++R YG  AF+ L       +           R+ N   E+ +    L 
Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460
             + +++    R  Y   I    Q        + +   +  +   R   Q+         
Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465

Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                   ++ +       +    E +LL  L+N   + Q   Q+L D  + ++E Q+L+
Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTV-QQLPDFSFAHDEYQELY 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L S     + F   +    L +    +L  ++         +   +E +         
Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +AL      + ++K + ++       + EAE T  +I +  ++  Q 
Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625


>gi|221212354|ref|ZP_03585331.1| DNA primase [Burkholderia multivorans CGD1]
 gi|221167453|gb|EED99922.1| DNA primase [Burkholderia multivorans CGD1]
          Length = 621

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 174/653 (26%), Positives = 276/653 (42%), Gaps = 62/653 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV----------DPKIEKKEK 112
           +CF C   G  + FL    G +F E+VQ LA   G+ +P            D      + 
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSTRGGGAGGDYPAPVSKS 116

Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---SL 169
           + T L  ++  A D++   L+         YL  RG+       F LGYAPD      + 
Sbjct: 117 VATALSDVMATACDYYRKQLRG--APAAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEAA 174

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
             + R     E  ++      D   +A  YDRFR R++FPIR+ +GQVI FGGR L  GE
Sbjct: 175 FPNYRDDALVESGLVIVSEKTDAQGAARRYDRFRERIMFPIRNVKGQVIGFGGRVLGSGE 234

Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289
             KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L Q 
Sbjct: 235 P-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALAQL 283

Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
           G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A++  L H      + 
Sbjct: 284 GFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTIR 343

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           F+ L    DPDS++R +G  AF   +  ++PL   L       ++ + P+ RA+     K
Sbjct: 344 FLFLPPEHDPDSYVREFGADAFSDQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAK 403

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             +  +    LR      I DRL   F++         R                     
Sbjct: 404 PLLQALPANALRAQIMHMIADRLDIPFEEVAALSEVDARIA---------------AAPR 448

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                   ++ +  E   L TL+ HP I      E          + +L++ +       
Sbjct: 449 QAPARSDRRRVTESEKRALRTLVMHPRIALALDDEQVATLRALPRIGELFAEVVDHARAL 508

Query: 530 KYFLPEEIHQRL-----CERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ-- 579
                  +   +         + E+ +++   D  VRD  L +   EA     R+  +  
Sbjct: 509 GDGAEFRLLSDVLRTSPNSATYEEIFREILDYDENVRDLLLQNPDDEAVAERQREQERIA 568

Query: 580 ----QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
               QA  L  R+     + + + +Q        E  +   L     ++  ++
Sbjct: 569 GEELQAAVLKVRYDACCDRLDRLARQ--SAFTPEELAELKHLNEQRTDMKRRL 619


>gi|307324813|ref|ZP_07604019.1| DNA primase [Streptomyces violaceusniger Tu 4113]
 gi|306889695|gb|EFN20675.1| DNA primase [Streptomyces violaceusniger Tu 4113]
          Length = 652

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 148/672 (22%), Positives = 271/672 (40%), Gaps = 59/672 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D +K +   +PI  ++ +Y+         +KG     CPFHDEK+PSF  + SKG 
Sbjct: 4   RINDDDVKAVRAAVPIDAVVSEYLQLRNGGGGNLKGL----CPFHDEKSPSFQVSPSKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIR 119
           YYCF C   GD + F+  +   SF E+++RLA+ AG+ L   +      +++  +T L+ 
Sbjct: 60  YYCFGCQEGGDTVDFVMKIDHLSFAETIERLASQAGITLRYEEGGYTPGRQQGERTRLVE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             + A  F+   L+    +    +L ERG D  A + F +GY+P     L  +LR +GF+
Sbjct: 120 AHKAAAQFYVEQLERPEAEIGRTFLAERGFDQAAAQHFGVGYSPAGWDHLVRYLRGRGFT 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           ++++I +GL+ +        DRFR RL++PIR   G+V+ FG R L   ++  KYLN+PE
Sbjct: 180 DKELILSGLVQE--GRRGPIDRFRGRLMWPIRDISGEVVGFGARKLRDDDNGPKYLNTPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A   + K+ R           ++VEGY DV++   AGV   +++ 
Sbjct: 238 TPLYRKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIATC 287

Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           GTA     +++L +L        +V  FDGD  G +AA +A +               + 
Sbjct: 288 GTAFGGDHIKILRRLLMDNSGAEVVFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIT 344

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  A   L+     L +   ++     + +T   RA         + 
Sbjct: 345 PGGMDPCELRLAEGDEAVRTLVETRTQLFEFAIRQILARHNLDTAVGRAAALEEAAPVVA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-------------RDQK 460
            IK+  +++  +  +   L  L  +++         W +                     
Sbjct: 405 GIKNGSIQHESAVHLAGLLGILDTQFVVRRVSQLARWARERGRGSGGEQRGRPGGVPAGD 464

Query: 461 GPSQRLMQSSLVKG-------------KLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
           GP  R  +    +G              L     L E  LL   + +P ++   +     
Sbjct: 465 GPQYRHRREPEAQGDPGAPAPPRGPRLDLRSPAHLAERELLKCALQYPQLVSPTFDAFGA 524

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
             +      ++   +             +   R+ +    + ++ L  ++    L  +  
Sbjct: 525 DEFTAAPYARVRMAIAEAGGTAGA--DADYLVRVRDVAPDDTVRGLILELTVEPL--SLP 580

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH-- 625
                ++ + Y        R + + R+  E+   + ++    +A   +     L  +   
Sbjct: 581 RRRQREIDRTYVGQWLAAVRLQAVDRRIGEVHAGVQRLGPYADAASLSAFQEELKALQVY 640

Query: 626 IQIHQIESQEAM 637
            +  ++   EA+
Sbjct: 641 REGLRVRGAEAL 652


>gi|297206048|ref|ZP_06923443.1| DNA primase [Lactobacillus jensenii JV-V16]
 gi|297149174|gb|EFH29472.1| DNA primase [Lactobacillus jensenii JV-V16]
          Length = 598

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 152/627 (24%), Positives = 273/627 (43%), Gaps = 40/627 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P DFI ++   I I ++I QYV  ++R       DY   CPFH EKTPSF  ++ K F
Sbjct: 7   RIPEDFINEVRNSINIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFTVSEDKQF 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+  SF+    G SF E+V  +A +A + +P      + + K  + L ++ 
Sbjct: 62  FKCFGCGKGGNVFSFMQYKEGLSFPEAVAEVAKMANLAMP---SGYQSEMKPLSPLKKVH 118

Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A DFFH   L +   +R   Y  ER +    +E F++GYAP+S + L   LR KG+ +
Sbjct: 119 QDACDFFHQVLLTSKAGERALNYAKERELSEDLLEHFQIGYAPNSDHLLLTFLRGKGYDD 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
             + ++GL      +   +DRFR+RL+FP+    G ++ F GR +S  +   KYLNSPET
Sbjct: 179 TVLAKSGLFSQN-ENGQLFDRFRDRLMFPLADEVGYIVGFSGRRISNNKELAKYLNSPET 237

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K K L++   A    +          +   ++L EGYMDV++  +AG++  ++S+G
Sbjct: 238 EIFNKSKVLFHLKEAKKAAR----------TEKHLVLYEGYMDVIAAYKAGIKTGIASMG 287

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ LL ++S  I++ +DGD+PG  A  +A  +     + G +V  V L  G DP
Sbjct: 288 TSLTDDQVYLLKRISRNIIINYDGDEPGQHAIERASHMF--ETVGGFQVGVVSLPEGLDP 345

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG   ++  +  ++   D   KR     +F+   E+          I  + +  
Sbjct: 346 DEYVKKYGPERYQDEVKGAITPTDFFLKRLELKYNFSNDREKLAYLDEAVKLIAPLNNPV 405

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y   +  ++              GR  +   R + Q          + V    +  
Sbjct: 406 ERDLYVTKLAKKVGVSEDSLKVSLLREGRKLRVAERRKKQYDFEPEEQSKTQVATLHNAN 465

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           P+L    L    ++   +            + +    KL                   + 
Sbjct: 466 PALV--RLFYLFVHSEKVRNYLLDL--HFLFPDESYAKLAESWLDFEETHDNATINSFYD 521

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            + +         L   + +  + +   + +  +V       LA  K+     R+   ++
Sbjct: 522 FIPD--------DLKGIIDNMEMMTMPEDFSKEEVD----GLLASLKKLDT-QRKISNLQ 568

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHI 626
            Q+     + + ++    + ++     
Sbjct: 569 MQLQDAQRRQDEDQVLKTLEMIINAKR 595


>gi|187934139|ref|YP_001885114.1| DNA primase [Clostridium botulinum B str. Eklund 17B]
 gi|187722292|gb|ACD23513.1| DNA primase [Clostridium botulinum B str. Eklund 17B]
          Length = 592

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 164/627 (26%), Positives = 284/627 (45%), Gaps = 45/627 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P++ I+ +     I ++I + V   R   N     +   CPFH++KTPSF  +  K 
Sbjct: 1   MQIPQEIIEKVKEQTDIVDIISESVRLKRTGKN-----FIGLCPFHNDKTPSFSVSQEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y CFSC   G+ L+F+      +F+E+V+ LA    +P+ +   +  +  K +  L ++
Sbjct: 56  IYKCFSCGEAGNVLTFIMKQKNLTFVEAVKYLADKVNIPINLHSNETPQFIKKREILYKI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
                 ++  +L+     +   Y   RGI    I+ F LGY+ +S   L  +LR KG+ +
Sbjct: 116 NVETGRYYFTNLQKIHLAKD--YFLNRGIKEATIKKFGLGYSKNSWRDLITYLRAKGYKD 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + +IEAGL+         YDRFRNR++FP+   +G+VI FGGR L      KYLNSPET 
Sbjct: 174 DFLIEAGLVSKNQEKGNIYDRFRNRVMFPVFDVKGRVIGFGGRVL-DDSKPKYLNSPETT 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F KG NLY    A+    K            ++I+VEGYMD+++L Q GV NVV+SLGT
Sbjct: 233 VFQKGINLYGLNFAVKNKLK----------EDYMIIVEGYMDLITLHQYGVTNVVASLGT 282

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q +LL + +  +++ +D D  G  A  + +++       G  V  +++ +G+DPD
Sbjct: 283 ALTNNQAKLLKRYTNNVIISYDADIAGQTATLRGLEI---LRNSGFEVKVLIIPQGKDPD 339

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            F+R  GK AF KL  E+LPL++   KR  E  +    +   +    + + +  + +   
Sbjct: 340 EFVRSNGKDAFLKLAREALPLIEYRIKRIGEGINLKDRNNLIKYGEKVASILADL-NPVE 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + I +      Q      S      +K   + ++K            K  +    
Sbjct: 399 KDVYIKKISEDTGIKEQALYDLLSQVMSKKQKEDNYVNKKEEF-------GTKLYVEPAY 451

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E ALL  ++N   I  +    ++   +  +  ++++S +     E            
Sbjct: 452 LKAERALLKLMLNQ-EIYDQIKDSMSSEDFILDSHKRIYSLILESKNEN----------- 499

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRLLSRQKEEI 598
                    ++    Q+  +  W A  E  I+D+  +           +   L  +  ++
Sbjct: 500 --SNNIESYVENRCDQIESSKEWIAIKELEILDLSNKDKLINDYLNEVKCFKLQLEINDL 557

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVH 625
           + +  ++  KG  E++  L   L  + 
Sbjct: 558 KNEQKRLEDKGMIEESIKLAVKLTNLE 584


>gi|304415464|ref|ZP_07396112.1| DNA primase [Candidatus Regiella insecticola LSR1]
 gi|304282693|gb|EFL91208.1| DNA primase [Candidatus Regiella insecticola LSR1]
          Length = 588

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 180/630 (28%), Positives = 289/630 (45%), Gaps = 55/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRGFINDLLARTDIIDLIDTRVKLKKKGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL +     F+ES++ LA I G+ +P        + ++  + ++  
Sbjct: 59  YHCFGCGAHGNAVDFLISYDRLEFVESIEELATINGMTVPYEQGTGASQVEKHQRQNIYA 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    +F+  SL +    + + YL++RG++   I  F +G+AP    +L +       +
Sbjct: 119 LMNQIGEFYQQSLNSPPAHQAYRYLEQRGLNKAIIHHFAIGFAPPGWDNLLKRFGNSNET 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              +  AG+L+  +N+   YDRFR R++FPIR  RG++IAFGGRT       KYLNSPET
Sbjct: 179 RTTLNHAGMLV-TNNTKRCYDRFRERIMFPIRDKRGRIIAFGGRT-VDDSVPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K + LY ++             V++ + S ++LVEGYMDV++L Q G+   V SLG
Sbjct: 237 EIFRKSRQLYGWYE----------VQVKQPNPSRLLLVEGYMDVVALAQFGIDYAVGSLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T   L+LL++ +  +V C+DGD  G  AA++ +   L +L  G ++ F+ L  GEDP
Sbjct: 287 TATTAEHLQLLFRTTDHVVCCYDGDKAGRSAAWRTLITALPYLNDGRQLRFMFLPEGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ IR  GKTAFE+LI ++ PL   L++        ++PD RA+L       IN +  + 
Sbjct: 347 DTLIRREGKTAFEQLIDQAQPLSKFLFETLMLQVDLSSPDGRAKLSTLALPLINQVPGET 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  Q +  +L       + +            R    K  +                
Sbjct: 407 LRLYLRQELGHKLGIPDDSLLDKLIPRQVAASNTYRRPQIKPTTM--------------- 451

Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  L+  L+ HP +       Q +   +        L+  L    + Q      ++
Sbjct: 452 -----RILIALLVQHPHLAASVPSLQGIKQAKLAGLP---LFIELVETCLAQPDLNTGQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            ++  +  + + L++L        +W+      I  V   +  AL  +     L  + E 
Sbjct: 504 LEQYRDNKYSKQLEKLA-------IWNDIEIKEI--VETTFLDALH-HLFDSALEERLEI 553

Query: 598 IEKQIAQVTAKGEAEKTA-ILISILHEVHI 626
           +  +          E+    LI+       
Sbjct: 554 LIARARTAQGLSAEERQEVRLINEARGKKK 583


>gi|269215370|ref|ZP_06159224.1| DNA primase [Slackia exigua ATCC 700122]
 gi|269131226|gb|EEZ62300.1| DNA primase [Slackia exigua ATCC 700122]
          Length = 626

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 169/647 (26%), Positives = 261/647 (40%), Gaps = 46/647 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + P   I+ +     +  ++G  V   +R       D+W CCPFH+EKTPSF  + +   
Sbjct: 3   SIPEGDIRRVREASDLVAIVGDRVQLRQRGR-----DFWGCCPFHNEKTPSFKVDPTTQL 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           ++CF C   GD +SF+  +    F ++V+ LA  AG+ +   DPK       +  L    
Sbjct: 58  WHCFGCGEGGDVISFVMKIDDLGFADAVRFLAQRAGIQI-AEDPKAAAFRGKKARLKEAC 116

Query: 122 EVATDFFHHSLKNAR---DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           E A +F+H  L  +R         YL  R +       + LGYAP  R SL  HL  KGF
Sbjct: 117 EAAAEFYHLQLMRSREDGAASARAYLASRDMGGSVPNRWNLGYAP-GRQSLVRHLSAKGF 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           + +++I+A L +         DRF  R++FPIR + G  IAFGGR + KGE  KYLN+ E
Sbjct: 176 ASKELIDANLALVSKKDGRLRDRFYERVMFPIRDADGDTIAFGGRVIGKGEP-KYLNTQE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LFHK + L+    A   +           S+   ++VEGY DV+ L ++GV+N V++L
Sbjct: 235 TPLFHKSRVLFGLDVAKAAMA----------STGIAVIVEGYTDVIMLHESGVKNAVATL 284

Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAID-----LVLCHLIPGNRVNFVL 352
           GTALT   +R L      RIV  FDGD+ G RAA +A       ++         +    
Sbjct: 285 GTALTVQHVRQLSRHAKQRIVYLFDGDEAGQRAADRAARFIDESMLPEAGRKQVGLFACT 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L    DP  F+   G      LI  + PL+     R+   R  +   E++     +   +
Sbjct: 345 LPDNLDPADFVSQRGADELRSLIDRATPLLRYAIDRKLARRDLSDFTEKSSALPEVIELL 404

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             IK   L   Y+  + DRLQ        + +                 PS      +  
Sbjct: 405 APIKHSLLAQEYATYLADRLQVDPSVVTAKLAAAKVSAPAGEEPTPMPVPSGTGEGDAAA 464

Query: 473 K------GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
                      ++    E   L     HP I       LA   + +     +   L S  
Sbjct: 465 PVADRTLAPRDRERLRIEREFLSLCARHPQIGIAYAAPLASTSWASRRHAAVSEALLSVL 524

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
            E    LP EI   +     G   + L              +    D+     + L+L  
Sbjct: 525 AEHPGALPAEIIDAVDAACPGS--RSLLTAAS------LYDDMEPADLACFLTEELSL-- 574

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             R L R    +  Q+    A    +   +L + +  +  ++ ++  
Sbjct: 575 --RDLERTILTLTSQLKN-DADLSEDDYGLLYASVASMQKELAELRR 618


>gi|319638162|ref|ZP_07992925.1| DNA primase [Neisseria mucosa C102]
 gi|317400435|gb|EFV81093.1| DNA primase [Neisseria mucosa C102]
          Length = 590

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 186/629 (29%), Positives = 297/629 (47%), Gaps = 48/629 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL  + I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLSKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  +        +++K Q  
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMTVPKVRGQEDNPEIRAERKKKQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A DF+   LK     +   YLD+RG+ +  I  + LGYAPD    L +    +
Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +++ G++ID  N    YDRFR+R++FPIR+ RGQVI FGGR L      KYLNS
Sbjct: 173 PYPNTALVDTGMVID--NEGKHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  +     ++++ R          I++VEGYMDV++L Q G+   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGIGYGVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L     ++F+ L   
Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDGAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS+IR YGKT FE  L+ +S PL +  W+  ++  + NT + +AEL       +  I
Sbjct: 340 HDPDSYIRTYGKTQFEDALLNQSKPLSEYFWEHLSDGLNLNTQEGKAELVKTSSPLLAQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L Y   Q + + +                  K++ + +  K P   + Q +++   
Sbjct: 400 TAPALGYLLKQKLSELVGIDPDNLAQLLGQEA--PKRHVKQKSYKLPPISVKQPTML--- 454

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                +L +  +   LIN PA       +L D    + +   L +   +           
Sbjct: 455 -----TLVQRQIRSLLIN-PAWASYI--DLPDYLALSGDFACLANLAETIKNHATIPATA 506

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ + +    + E + Q+      +       E +    + G ++ L   K       Q 
Sbjct: 507 QVLEYMRGSPYEETVNQIFLSTLHSEEMEGDDEEDCESFQIGMKKLLNELK-----YSQI 561

Query: 596 EEIEKQ-IAQVTAKGEAEKTAILISILHE 623
           E ++++ I     + E      L++    
Sbjct: 562 ETLKQKSIQTGLTENEKRLLLSLLTAKQN 590


>gi|255975890|ref|ZP_05426476.1| DNA primase [Enterococcus faecalis T2]
 gi|307278113|ref|ZP_07559197.1| DNA primase [Enterococcus faecalis TX0860]
 gi|255968762|gb|EET99384.1| DNA primase [Enterococcus faecalis T2]
 gi|306505510|gb|EFM74696.1| DNA primase [Enterococcus faecalis TX0860]
          Length = 628

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 165/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++     I ++IGQYV   +   N     Y   CPFH+E++PSF   + K  
Sbjct: 4   RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           ++CF C   G   +FL  + G SF ESV+R+A +  + +        +     + + +  
Sbjct: 59  FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L++L   A + +HH L      +    YL ERG+    IE F++G+AP  R  L +  + 
Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230
           +   E     +GL +  DN  T  DRF  R++FPI   +G VIAF GR L        E 
Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF+K + L+NF  A   ++K           + ++L EG+MDV++  Q+G
Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V++ V+S+GT+LT  Q+R L +++  +V+C+DGD+ G++A  +AI L+  +      +  
Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           V +    DPD ++R YG  AF+ L       +           R+ N   E+ +    L 
Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460
             + +++    R  Y   I    Q        + +   +  +   R   Q+         
Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEKQFNQLKQEQRSVQRQERQQFYQDEMMPP 465

Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                   ++ +       +    E +LL  L+N   + Q   Q+L D  + ++E Q+L+
Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTV-QQLPDFSFAHDEYQELY 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L S     + F   +    L +    +L  ++         +   +E +         
Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +AL      + ++K + ++       + EAE T  +I +  ++  Q 
Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625


>gi|251777737|ref|ZP_04820657.1| putative DNA primase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082052|gb|EES47942.1| putative DNA primase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 592

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 166/627 (26%), Positives = 285/627 (45%), Gaps = 45/627 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P++ I+ +     I ++I + V   R   N     +   CPFH +KTPSF  +  K 
Sbjct: 1   MQIPQEIIEKVKEQTDIVDIISESVRLKRTGKN-----FIGLCPFHSDKTPSFSVSQEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y CFSC   G+ L+F+      +F+E+V+ LA  A +P+ +   +  +  K +  L ++
Sbjct: 56  IYKCFSCGEAGNVLTFIMKQKNLTFVEAVKYLANKANIPMNLHSNETPQFIKKREILYKI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
                 ++  +L+     +   Y   RGI    I+ F LGY+ +S   L  +LR KG+ +
Sbjct: 116 NVETGRYYFTNLQKIHLAKD--YFLNRGIKEATIKKFGLGYSKNSWRDLITYLRTKGYKD 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++EAGL+         YDRFRNR++FP+   +G+VI FGGR L      KYLNSPET 
Sbjct: 174 DFLLEAGLVSKNQEKGNIYDRFRNRVMFPVFDVKGRVIGFGGRVL-DDSKPKYLNSPETT 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F KG NLY    A+    K            ++I+VEGYMD+++L Q GV NVV+SLGT
Sbjct: 233 IFQKGINLYGLNFAVKNKLK----------EDYMIIVEGYMDLITLHQYGVTNVVASLGT 282

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q +LL + +  +++ +D D  G  A  + +++       G  V  +++ +G+DPD
Sbjct: 283 ALTNNQAKLLKRYTNNVIISYDADIAGQTATLRGLEI---LRNSGFEVKVLIIPQGKDPD 339

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            F+R  GK AF KL  E+LPL++   KR  E  +    +   +    +   +  + +   
Sbjct: 340 EFVRSNGKDAFLKLAREALPLIEYRIKRIGEGINLKDRNNLIKYGEKVAKILADL-NPVE 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + I +      Q      S      +K   + ++K       +    K  +    
Sbjct: 399 KDVYIKKISEDTGIKEQALYDLLSQVMSKKQKEDNYVNKK-------EDFGTKLYVEPAY 451

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E ALL  ++N   I  +    ++   +  +  ++++S +     E    +   +  R
Sbjct: 452 LKAERALLKLMLNQ-EIYDQIKDSMSSGDFILDSHKRIYSLILESKNENSNNIESYVENR 510

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRLLSRQKEEI 598
             E             +  +  W A  E  I+D+  +           +   L  +  E+
Sbjct: 511 CDE-------------IESSKEWIAIKELEILDLSNKDKLINDYLNEVKCFKLQLEINEL 557

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVH 625
           + +  ++  KG  E++  L   L  + 
Sbjct: 558 KNEQKRLEDKGMIEESIKLAVKLTNLE 584


>gi|116748653|ref|YP_845340.1| DNA primase [Syntrophobacter fumaroxidans MPOB]
 gi|116697717|gb|ABK16905.1| DNA primase [Syntrophobacter fumaroxidans MPOB]
          Length = 601

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 168/626 (26%), Positives = 276/626 (44%), Gaps = 53/626 (8%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +   + I +++GQ V   R         +   CPFH EKTPSFH +     YYCF C   
Sbjct: 5   VKQAVDIVDVVGQVVQLRRSGN-----RHLGLCPFHQEKTPSFHVDAENQLYYCFGCGSG 59

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-------PKIEKKEKIQTDLIRLIEV 123
           GD L+F+      +F E+++ LA    + LP  D         IE   K + +L R++  
Sbjct: 60  GDVLNFVMKHRNVAFGEAIRYLAERYHIALPERDHVEGATPGAIESARKEREELYRILRS 119

Query: 124 ATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A DFF+  L  +   +    Y+  RG+ +  +E  ++G+AP S  SL  HL   G+  E 
Sbjct: 120 AADFFYDQLHHSPEGRIAREYIARRGLPAEVVETERMGFAPQSWDSLSRHLANLGYDVEP 179

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG--ESVKYLNSPETI 240
            I AGLL         YDRFRNRLIFPIR   G+++AFGGR+LS    +  KYLNSPET 
Sbjct: 180 GIGAGLLARSTGKDRVYDRFRNRLIFPIRDEGGRIVAFGGRSLSADLKDEPKYLNSPETA 239

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++HKG+ LY    A    +               +LVEGYMD+L+    G   VV++LGT
Sbjct: 240 VYHKGRLLYQLARAREACR----------QVRQTVLVEGYMDLLAFHARGFFRVVATLGT 289

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT +Q+R+L ++S  +V+ +DGD+ G +A  + + L    L     V+ V    G DPD
Sbjct: 290 ALTPHQVRILSRMSDEVVMAYDGDEAGDKAMLRGLPL---FLQENVAVSCVRFPDGMDPD 346

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            F+R  G   FEKL+     L     KR  +     +   R ++   L+   + ++   L
Sbjct: 347 DFLRRDGLEGFEKLLRSRQELGAYAVKRILDG-WDGSASARLKIAAELRPIFDAVRQPLL 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y +   DRL    +    +     R  ++      +      +            + 
Sbjct: 406 KSEYLRLAADRLCVSEEVLNQQLRHDRRTPERPYSRSYRTPVLPGI-----------SET 454

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD-FVEQKYFLPEEIHQ 539
              E  +L  LI +P ++++     A   +   +L+ L   L       +  F    ++ 
Sbjct: 455 QTLEEKILRLLIRYPDLIEQADSSGALEYFQEPKLRALAMVLVGTPHAPESEFNASIVYD 514

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L +    E+  +                A + + R      L    R R L ++  +++
Sbjct: 515 ELADPESKEMFTRFM-----------LESAELAEPRVQLNDWLIALTR-RELKQRSLDLD 562

Query: 600 KQIAQVTAKGEAEKTAILISILHEVH 625
             +     +G++++   ++  +  ++
Sbjct: 563 TALKAAVREGDSDRVRHILVEIQNLN 588


>gi|284008588|emb|CBA75167.1| DNA primase [Arsenophonus nasoniae]
          Length = 597

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 166/622 (26%), Positives = 279/622 (44%), Gaps = 53/622 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 21  RIPRTFINDLLARTDIVDLIDTKVPLKKQGKN-----HHACCPFHNEKTPSFTVNGDKQF 75

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+++ LA + G+ +P        + +   + +L +
Sbjct: 76  YHCFGCGAHGNAIDFLMNYDKLDFVETIEELATLHGLEIPYETGNSSNQIERHQRQNLYQ 135

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+     F+  SL     ++   YL +RG+    I  F +G+AP    +L +H  +   S
Sbjct: 136 LMNEVNQFYQRSLNKLDSQKAKQYLIQRGLSDEVIHRFSIGFAPTGWDNLLKHFAKHAES 195

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            +++  AG+L+  +N+  +YDRFR R++FPIR  RG+V+AFGGR L      KYLNSPET
Sbjct: 196 HKQLDAAGMLV-TNNNGRTYDRFRERIMFPIRDRRGRVVAFGGRVL-DDTLPKYLNSPET 253

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A        +          +++VEGYMDV++L Q G+   V+SLG
Sbjct: 254 EIFHKGRQLYGLYEATQNNPALSK----------LLVVEGYMDVVALAQFGINYAVASLG 303

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++ C+DGD  G  AA++ ++  L +L  G ++ F+ L  GEDP
Sbjct: 304 TSTTAEHIQLLFRTTDTVICCYDGDKAGREAAWRTLETALPYLSDGRQLQFMFLPDGEDP 363

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS IR  GK  FE+ + +S  L   L+          + + +A+        I  +    
Sbjct: 364 DSLIRKEGKANFEQRMDKSHSLSTFLFDTLVAQVDLASHEGKAKFNRLAIPLIKKVPGDT 423

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           L+ Y +Q +   +       I      G   K N +    K  +                
Sbjct: 424 LQLYLAQELGSFIGIPDTSRILAMIEKGLAEKTNYQAPKIKTTTM--------------- 468

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P  +      L  I++       L+  L             ++ +
Sbjct: 469 -----RILIALLVQNPNFVS-LIPTLDGIKHSQLPGLMLFLELVELCQSHPGITTGQLLE 522

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                 F + L++L              +  I ++ +   +    +     L  + E + 
Sbjct: 523 CYRNNKFVKQLEKLATW----------NDIEIEEIAEKMFKDALEHLFITALDERFESL- 571

Query: 600 KQIAQVTAKGEAEKTAILISIL 621
             IA+   +G   +    + ++
Sbjct: 572 --IAKERTEGLTSEEREEVRLI 591


>gi|81428493|ref|YP_395493.1| DNA primase G [Lactobacillus sakei subsp. sakei 23K]
 gi|78610135|emb|CAI55184.1| DNA primase G [Lactobacillus sakei subsp. sakei 23K]
          Length = 627

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 158/656 (24%), Positives = 276/656 (42%), Gaps = 60/656 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I ++     I +++GQYV   +   N      +  CPFHDEKTPSF  ++ K  
Sbjct: 4   KIPNEVIDEIRSQTNIVDVVGQYVQLKKAGKNL-----FGVCPFHDEKTPSFSVSEEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIR 119
           ++CFSC   G+   FL  L   SF E++ ++A  AGV L        + ++    T   +
Sbjct: 59  FHCFSCGRGGNVFKFLMELEQISFPEALTKVADFAGVTLADSYKPTAVHRESSEVTQFKQ 118

Query: 120 LIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L + A + F H L +    +    YL ER +    IE F +GY PD    L    + K  
Sbjct: 119 LYQQANELFKHILTSTVAGQPALDYLHERQMTDALIETFSIGYLPDQSDLLLTFFQNKDI 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSP 237
             + + ++GL I+       +DRF  R++FPIR+++G+VIAF GR L  + +  KYLNSP
Sbjct: 179 PYQVLRQSGLFIETQTG-KLHDRFSGRVMFPIRNAQGEVIAFSGRVLTKQPDQPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET++F+K K L+N+  A   + +S +          + L EG+MDV++   A V N V+S
Sbjct: 238 ETVIFNKRKVLFNYDLAKQTIHQSKK----------VYLFEGFMDVIAAYSADVVNGVAS 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT+LT  QL LL + +  +V+C+DGD PG+ A  +AI+L+  H      V  V+L  G 
Sbjct: 288 MGTSLTTEQLNLLAQQAQELVVCYDGDQPGIEAMKRAINLLQQHTTLELSV--VVLPGGV 345

Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD ++R YG   F++ L   +   +    +   +  + +   ++ +        +  ++
Sbjct: 346 DPDEYVRQYGGPQFKETLQNGTETPIAFELRYLKQGLNLDNEKDQLDYVQQALEVVARVE 405

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL---------- 466
                  Y + +             +                   P              
Sbjct: 406 SPLAIEVYLKQVEADSGITLDTLKRQLQTVRVKHATQVPINQVGQPEAPPYFDDFQAPPL 465

Query: 467 -------------MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
                          +   + K   +    E  +L  LI++  +  +  +  AD  + + 
Sbjct: 466 PPEEMAGAFGDPRTIAPKRQPKRLTRIEHAEQEILHMLIHNEDVRLQ-LENNADFSFVHT 524

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
             Q L+    S   E +          + +         L + V    L     EAN   
Sbjct: 525 PYQLLYELWRSFIAEGQPADIAGFTSYIPD--------DLQQLVVQIDLLDLPEEAN--- 573

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            ++     LA+  +   +  + +E +  + + T  G   +   L + + ++  Q+ 
Sbjct: 574 -QEALNDCLAVIGK-NSIQERLKEAKIALKEATKLGNHSEELRLTNEVIQLVSQMK 627


>gi|199598417|ref|ZP_03211836.1| DNA primase (bacterial type) [Lactobacillus rhamnosus HN001]
 gi|258508507|ref|YP_003171258.1| DNA primase [Lactobacillus rhamnosus GG]
 gi|199590736|gb|EDY98823.1| DNA primase (bacterial type) [Lactobacillus rhamnosus HN001]
 gi|257148434|emb|CAR87407.1| DNA primase [Lactobacillus rhamnosus GG]
 gi|259649817|dbj|BAI41979.1| DNA primase [Lactobacillus rhamnosus GG]
          Length = 589

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 157/633 (24%), Positives = 267/633 (42%), Gaps = 47/633 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   I  +L  + I++ IGQYV   +   N      +  CPFH+E TPSF  N+SK  +
Sbjct: 2   IPEATIDQVLKAVNIADYIGQYVQLRKTGQNL-----FGLCPFHEEHTPSFSVNESKQIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CFSC   G+   F+      +F E+V+++A  AG+PL V   +    +        +++
Sbjct: 57  HCFSCGRGGNVFKFVMDYDNATFPEAVKKVADFAGIPLDVQVGQAAPVDPEVAKQQHILQ 116

Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
              D +HH L    + +    YL +RG+    IE F+LGYAP+ R  L   L  +    +
Sbjct: 117 DTADLYHHILVNTEKGEAALAYLHKRGLTDETIEEFQLGYAPEERNLLVAFLNNRHVEYQ 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
               +GL ++       +DRF +R++FP+  + G+V+ F GR L   +S  KYLNSPET 
Sbjct: 177 DQRASGLFVEDQAG-KLFDRFNDRVMFPLTDANGKVVGFSGRILQLDKSQAKYLNSPETK 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF+K   L+N   A     +              IL EGYMDV++  QAGV+  ++S+GT
Sbjct: 236 LFNKRDILFNLHRAKAEFGRDGGP----------ILFEGYMDVIAAYQAGVKTGIASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ ++  LS R+ +C+DGD+PG +A  +A+ ++  H     + + V+L  G DPD
Sbjct: 286 SLTTEQVDIISHLSKRLTVCYDGDEPGQKAIERAVTMLADHPR--LQTDVVVLPDGMDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +IR  G  AF+  +   L     + +        +    +          I  I D   
Sbjct: 344 EYIRARGAEAFQAQVKSVLTPTAFMLQFLARGVDMHNDQAKLTYLNAALRIIGKISDPVA 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y + + +  +                          + P+      +    +   + 
Sbjct: 404 RAVYVKQLAETTEVPIAALNQSL-----------PSPQTRRPAAAQPPVADQPVRPLDRY 452

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +  +  LL  + +   ++Q      A   +     Q L++       EQ          R
Sbjct: 453 TAAQRQLLYYVWHDDLVMQRLKN--ATFVFPTPYFQTLFTGWLRFLHEQPDGELAGFLDR 510

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +        L  +   V    L  A +EA I ++ Q    A  +         + + I++
Sbjct: 511 VNPE-----LSGVAADVAMQSLPEA-SEATIDELIQTITSASTVS--------RLQAIKQ 556

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            I +    G+ +K   L      +   + Q + 
Sbjct: 557 AITEAQRLGDKQKQGELTVQYVNLMKLLKQQQG 589


>gi|256851183|ref|ZP_05556572.1| DNA primase [Lactobacillus jensenii 27-2-CHN]
 gi|260660607|ref|ZP_05861522.1| DNA primase [Lactobacillus jensenii 115-3-CHN]
 gi|256616245|gb|EEU21433.1| DNA primase [Lactobacillus jensenii 27-2-CHN]
 gi|260548329|gb|EEX24304.1| DNA primase [Lactobacillus jensenii 115-3-CHN]
          Length = 601

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 152/627 (24%), Positives = 273/627 (43%), Gaps = 40/627 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P DFI ++   I I ++I QYV  ++R       DY   CPFH EKTPSF  ++ K F
Sbjct: 10  RIPEDFINEVRNSINIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFTVSEDKQF 64

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+  SF+    G SF E+V  +A +A + +P      + + K  + L ++ 
Sbjct: 65  FKCFGCGKGGNVFSFMQYKEGLSFPEAVAEVAKMANLAMP---SGYQSEMKPLSPLKKVH 121

Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A DFFH   L +   +R   Y  ER +    +E F++GYAP+S + L   LR KG+ +
Sbjct: 122 QDACDFFHQVLLTSKAGERALNYAKERELSEDLLEHFQIGYAPNSDHLLLTFLRGKGYDD 181

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
             + ++GL      +   +DRFR+RL+FP+    G ++ F GR +S  +   KYLNSPET
Sbjct: 182 TVLAKSGLFSQN-ENGQLFDRFRDRLMFPLADEVGYIVGFSGRRISNNKELAKYLNSPET 240

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K K L++   A    +          +   ++L EGYMDV++  +AG++  ++S+G
Sbjct: 241 EIFNKSKVLFHLKEAKKAAR----------TEKHLVLYEGYMDVIAAYKAGIKTGIASMG 290

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ LL ++S  I++ +DGD+PG  A  +A  +     + G +V  V L  G DP
Sbjct: 291 TSLTDDQVYLLKRISRNIIINYDGDEPGQHAIERASHMF--ETVGGFQVGVVSLPEGLDP 348

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG   ++  +  ++   D   KR     +F+   E+          I  + +  
Sbjct: 349 DEYVKKYGPERYQDEVKGAITPTDFFLKRLELKYNFSNDREKLAYLDEAVKLIAPLNNPV 408

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y   +  ++              GR  +   R + Q          + V    +  
Sbjct: 409 ERDLYVTKLAKKVGVSEDSLKVSLLREGRKLRVAERRKKQYDFEPEEQSKTQVATLHNAN 468

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           P+L    L    ++   +            + +    KL                   + 
Sbjct: 469 PALV--RLFYLFVHSEKVRNYLLDL--HFLFPDESYAKLAESWLDFEETHDNATINSFYD 524

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            + +         L   + +  + +   + +  +V       LA  K+     R+   ++
Sbjct: 525 FIPD--------DLKGIIDNMEMMTMPEDFSKEEVD----GLLASLKKLDT-QRKISNLQ 571

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHI 626
            Q+     + + ++    + ++     
Sbjct: 572 MQLQDAQRRQDEDQVLKTLEMIINAKR 598


>gi|260434600|ref|ZP_05788570.1| DNA primase [Synechococcus sp. WH 8109]
 gi|260412474|gb|EEX05770.1| DNA primase [Synechococcus sp. WH 8109]
          Length = 682

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 171/681 (25%), Positives = 291/681 (42%), Gaps = 71/681 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ +     I +++G++V   ++       ++   CPFHD+  PS   + +K F
Sbjct: 5   RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           YYCFSC   G+ + FL      SF + V  LA    +P+  VD   +++ +     +  L
Sbjct: 60  YYCFSCGAGGNSIKFLMEFQRQSFSDVVLDLARRYQLPIETVDGPQQERLRQQLSRRDKL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            R + +A  +F   L          YL E RG+     E F+LGYAPD    L +HL+Q 
Sbjct: 120 QRALALAAGWFRSQLMAPAGAEALKYLSEARGLSPATQETFQLGYAPDQWDGLLKHLQQV 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G + E +  AGL++        YDRFR+R++ PI   +G+VI FGGR+L   E  KYLN
Sbjct: 180 EGLAPELLEAAGLVVPRKGGNGFYDRFRHRVMVPIHDRQGRVIGFGGRSLDGSEP-KYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK+L+    A N ++K  R           ++VEGY DV++L  AG+ N V
Sbjct: 239 SPETEVFEKGKHLFGLDKASNAIRKDDRA----------VVVEGYFDVIALHAAGITNAV 288

Query: 296 SSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVL 352
           +SLGTAL+  Q+  L +   S RIVL FD D  G+RAA +AI ++    +     +  + 
Sbjct: 289 ASLGTALSSQQITQLCRVSDSKRIVLNFDADGAGVRAANRAIGEVEQLAMQGQLELRVLH 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+DPD F++  G   +  L+ ++   +D   ++  + R  +  D+  +    L   +
Sbjct: 349 LPSGKDPDEFLKQNGAGDYRALLDQAPLWLDWQIEQVLQERDLSRADQFQQAVTALVGLL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    +R +Y Q + +RL     +   +     R   K  R   +    ++  +S   
Sbjct: 409 GKLPQSAVRTHYLQRVAERLSGGQGRLALQLEDDLRQQVKGQRWHGRSSRHEQPGESG-- 466

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFV-- 527
                 +    EA LL   ++ P       QEL       +     + LW+ +       
Sbjct: 467 ------QRERCEADLLRLYLHCPRHRATIRQELRKRELEDFAIPHHRHLWAAITDLEETN 520

Query: 528 --------------EQKYFLPEEIHQRLCER---GFGELLKQLDRQVRDAGLWSATTEAN 570
                         + +     ++ + L ++       L+ +L   +    L        
Sbjct: 521 LGEGRMESISRCDDDGEGLDLIDLPRLLTDQLLLESSALVSRLTPLLEPGELQRVALAEP 580

Query: 571 IVDVR--QGYQQALALYKRFRLLS-----RQKEEIEKQIA---QVTAKGEAE------KT 614
           +  +R      +     KR R L      ++ + +E  IA      A  +        + 
Sbjct: 581 LEQLRGIAALLERQKSLKRCRHLLEAWGGQRLQTLESCIAVLIDQEASSDQASVDMEVRI 640

Query: 615 AILISILHEVHIQIHQIESQE 635
             L   L+   ++  ++   E
Sbjct: 641 QALFDDLNRDALRYQELYYTE 661


>gi|77920270|ref|YP_358085.1| DNA primase [Pelobacter carbinolicus DSM 2380]
 gi|77546353|gb|ABA89915.1| DNA primase [Pelobacter carbinolicus DSM 2380]
          Length = 604

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 161/632 (25%), Positives = 280/632 (44%), Gaps = 36/632 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + ++++     I  +I  YV   R   N     +   CPFH EKTPSF+ N  +  
Sbjct: 4   RIADEKVEEIRARADIVEVISSYVSLKRSGRN-----HVGLCPFHAEKTPSFNVNADRQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEKIQTDLIR 119
           Y+CF C V GD  +FL  + G +F E+V+RL    G+      V P+ E++ + +  L+R
Sbjct: 59  YHCFGCEVGGDVFAFLMNIEGLAFPEAVRRLGERYGIEVEEEAVSPEEEQRREERERLLR 118

Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + EVA DF+H+  LK+   K    YL  RG D      F+LG+AP +  +L  HLR KGF
Sbjct: 119 VTEVACDFYHNLLLKDPSGKPARGYLRRRGFDGDIARQFRLGWAPAAWEALANHLRDKGF 178

Query: 179 SEEKII-EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
             +      GL+  G+     YD FR RL+FPI   RG+ +AFGGR L      KY+NSP
Sbjct: 179 DSKWARDRLGLVRAGNEGRNDYDLFRRRLLFPILDERGRPVAFGGRILEGD-GPKYINSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK + LY  + A + ++               I+VEGY D L+L +AG QN V++
Sbjct: 238 ESPIYHKARVLYGLYQARDAMR----------HKGEAIVVEGYFDQLALYRAGFQNTVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT   +RLL + + R++L FD D+ G +A ++A+D++L     G +   V L  GE
Sbjct: 288 CGTALTPEHVRLLKRFAERVLLLFDQDEAGRKATFRAMDVLLPE---GLQALVVTLDAGE 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF+R +     +  +  + P+V++  +R  E       + RA     +   +  +  
Sbjct: 345 DPDSFLRNHDAQKMQARLASARPVVEVFIERTLEQ-HGEDIEGRARAVEKILAKLRLLPG 403

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R  Y + +  R   L ++ +   +                 P     Q+   K    
Sbjct: 404 DIERDLYLKDLASRTG-LDEQLLRSKALPQAVPDPAPSSVPAVRPKPAARQAVPAKKTRR 462

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 +  LL  ++ + +             ++  +L+ L     S   E         
Sbjct: 463 GVAEKAQRILLRLILCYESACDAARNLGLGELFEEGDLRILAERALSVSAESGPVAENMR 522

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L E           ++   +G+          +  + +++   +  + R+  ++ ++
Sbjct: 523 IDDLSES----------QKGLLSGILLEDEGLFAENYDELFRKCHEMVNKERM-KQRLQQ 571

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +++ + +     +  +  +      E+  ++ 
Sbjct: 572 LQELMREAERGQDFTEMTVWQREFQELTRKLK 603


>gi|285017225|ref|YP_003374936.1| DNA primase [Xanthomonas albilineans GPE PC73]
 gi|283472443|emb|CBA14948.1| probable dna primase protein [Xanthomonas albilineans]
          Length = 578

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 176/633 (27%), Positives = 271/633 (42%), Gaps = 62/633 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI DLL    I  +IG  V   R+       +Y A CPFHDE++ SF  + +K F
Sbjct: 3   RIPDAFIDDLLARTDIVEVIGTRVPLKRQGK-----EYAARCPFHDERSASFTVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118
           Y+CF C   G  +SFL       F+++V  LA  AG+ +P         +   +   DL 
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEVPRDAQQRGAAQAAGEDHRDLY 117

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             +E AT FF   L  +   +   YLD RG+D+     F++GYAPD   +L++ L     
Sbjct: 118 SALEAATKFFQRQLDTSD--KARTYLDGRGVDAENRARFQIGYAPDGYSALKDALGTDER 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             + +  AGL    D     YD+FR+R++FPI   RG+VIAFGGR L K +  KYLNSPE
Sbjct: 176 RHKLLDRAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRVLDKDDGPKYLNSPE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LFHKG+ LY  +      QK  R          +I+VEGYMDV+SL Q GV   V++L
Sbjct: 235 TALFHKGRELYGLWQVRQSNQKIER----------LIVVEGYMDVVSLFQFGVTQAVATL 284

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T     LL++ +P +  CFDGD  G RA +KA++ VL  +  G +  F+ L  GED
Sbjct: 285 GTATTPEHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPEGED 344

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD+ +R  G  AF+  + ++ PL    +   +   + +T D +A L    +  +  I D 
Sbjct: 345 PDTIVRKEGAAAFDTRLAQATPLSQFFFDELSREINLSTLDGKARLAERARPMLAQIPDG 404

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                  Q + +                               P+        ++   S 
Sbjct: 405 AFGDLMRQRLTELTGI-----------------------GAAAPATTSTSRPPLRPARSA 441

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEE 536
                    +  L+  PA+     +      +    L   +L   L      +       
Sbjct: 442 HKRSLVREAIARLLQVPALA---LELTPPYPFAGLRLPGVELLIELLQIVHTRPEITTGA 498

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + +   ER     L++L  Q       S        ++     Q        + L ++ +
Sbjct: 499 LLEHFHEREELAALQKLVVQEIPGDTASWR-----QELLDVMVQ-----LEKQTLQQRLD 548

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           E++ +  +     E +K    +  L ++   + 
Sbjct: 549 ELQAK-QRAQGLDETDKYE--LRELLKILATLR 578


>gi|257089847|ref|ZP_05584208.1| DNA primase [Enterococcus faecalis CH188]
 gi|300861317|ref|ZP_07107404.1| DNA primase [Enterococcus faecalis TUSoD Ef11]
 gi|307275000|ref|ZP_07556163.1| DNA primase [Enterococcus faecalis TX2134]
 gi|312900721|ref|ZP_07760018.1| DNA primase [Enterococcus faecalis TX0470]
 gi|312903268|ref|ZP_07762448.1| DNA primase [Enterococcus faecalis TX0635]
 gi|256998659|gb|EEU85179.1| DNA primase [Enterococcus faecalis CH188]
 gi|295112958|emb|CBL31595.1| DNA primase [Enterococcus sp. 7L76]
 gi|300850356|gb|EFK78106.1| DNA primase [Enterococcus faecalis TUSoD Ef11]
 gi|306508448|gb|EFM77555.1| DNA primase [Enterococcus faecalis TX2134]
 gi|310633144|gb|EFQ16427.1| DNA primase [Enterococcus faecalis TX0635]
 gi|311292202|gb|EFQ70758.1| DNA primase [Enterococcus faecalis TX0470]
 gi|315144455|gb|EFT88471.1| DNA primase [Enterococcus faecalis TX2141]
 gi|315160484|gb|EFU04501.1| DNA primase [Enterococcus faecalis TX0645]
 gi|315172350|gb|EFU16367.1| DNA primase [Enterococcus faecalis TX1346]
 gi|315577572|gb|EFU89763.1| DNA primase [Enterococcus faecalis TX0630]
 gi|327535094|gb|AEA93928.1| DNA primase [Enterococcus faecalis OG1RF]
          Length = 628

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 165/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++     I ++IGQYV   +   N     Y   CPFH+E++PSF   + K  
Sbjct: 4   RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           ++CF C   G   +FL  + G SF ESV+R+A +  + +        +     + + +  
Sbjct: 59  FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L++L   A + +HH L      +    YL ERG+    IE F++G+AP  R  L +  + 
Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230
           +   E     +GL +  DN  T  DRF  R++FPI   +G VIAF GR L        E 
Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF+K + L+NF  A   ++K           + ++L EG+MDV++  Q+G
Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V++ V+S+GT+LT  Q+R L +++  +V+C+DGD+ G++A  +AI L+  +      +  
Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           V +    DPD ++R YG  AF+ L       +           R+ N   E+ +    L 
Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460
             + +++    R  Y   I    Q        + +   +  +   R   Q+         
Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465

Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                   ++ +       +    E +LL  L+N   + Q   Q+L D  + ++E Q+L+
Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTV-QQLPDFSFAHDEYQELY 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L S     + F   +    L +    +L  ++         +   +E +         
Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +AL      + ++K + ++       + EAE T  +I +  ++  Q 
Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625


>gi|260662166|ref|ZP_05863062.1| DNA primase [Lactobacillus fermentum 28-3-CHN]
 gi|260553549|gb|EEX26441.1| DNA primase [Lactobacillus fermentum 28-3-CHN]
          Length = 631

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 156/656 (23%), Positives = 275/656 (41%), Gaps = 55/656 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR+ I  L   + I+++I Q +   ++  N         CPFH++ TPSF  N+ K ++
Sbjct: 4   IPRETIDQLRNQVDIADVISQDIQLKKQGKNL-----MGHCPFHEDATPSFSVNEEKQYF 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRLI 121
           YCFSCH  GD  S+L      SF+E+V+++A  AGV LP        +     T L RL 
Sbjct: 59  YCFSCHRSGDVFSYLEQAHDLSFMEAVEQVATTAGVDLPRESNGPSGESASPNTPLYRLH 118

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAP--DSRYSLREHLRQKGF 178
           E A+  +HH L N    +    YL +RG+    I  F LG+AP       L ++  QKG 
Sbjct: 119 EEASRLYHHVLVNTVAGQPALNYLTKRGMSRELIGQFNLGFAPARGEEDLLVKYFTQKGI 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK---GESVKYLN 235
             + +  +GL  +       +DRF +R+I+PI+++ GQ IAF GR L+K     + KYLN
Sbjct: 179 DYQLMRASGLFTEDQTG-QLHDRFFDRVIYPIKNANGQPIAFSGRLLTKKATENAPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F+K + L+N   A    +K             + L EG+MDV+S   AGV++ +
Sbjct: 238 SPETPIFNKRRTLFNLDQAKKAARK----------EGHLTLFEGFMDVISAFGAGVRSGI 287

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GT+ T+ Q+ ++ + + ++ +C+DGD  G  A  +A+ +          +  V L  
Sbjct: 288 ASMGTSFTDEQVAVIARTTDKLTICYDGDAAGQNAINRALTM---LAASRLTLRVVQLPA 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVD-MLWKRETENRSFNTPDERAELEIHLKNCINH 414
           G DPD +++  G+  F++ +  +             +  +     E           +  
Sbjct: 345 GMDPDEYVQANGQAKFQEYLAHAEETPTAFRLHFLKQGLNLANQSELLHYVEAALREVAK 404

Query: 415 IKDQKLRYYYSQAIR--------------DRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
           + D   R  Y Q +                 L               R  ++    R Q 
Sbjct: 405 VTDPVERDLYIQQLAKDYHLNPATLTGQVQELAATAAPRPAYPENSPRQPRQAGTRRYQS 464

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P       S     L  K  L +  LL  + ++PA ++     + +  + +   Q L +
Sbjct: 465 TPPTTTTAPSTQAPPLLGKVELAQQRLLREMFHNPA-VRSHVGAIENFHFVDRPYQLLDA 523

Query: 521 FLFSDFVE--QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                            ++   L +     ++ Q++++V                V +  
Sbjct: 524 AAKEQLQRTGADEVDVAQLMGELTDAKLRTIVGQIEQRVVPQA-----------AVDETV 572

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              LA+      + +Q  E    + +  A  + +    L   L ++  Q  +++++
Sbjct: 573 DDCLAVLVDVAPIEQQIREKTAALQEAAALNDQQLITKLTIELIDLRRQEQKMKTE 628


>gi|114564159|ref|YP_751673.1| DNA primase [Shewanella frigidimarina NCIMB 400]
 gi|114335452|gb|ABI72834.1| DNA primase [Shewanella frigidimarina NCIMB 400]
          Length = 575

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 180/626 (28%), Positives = 302/626 (48%), Gaps = 55/626 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+  I I +LI + V   +   N       ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELIARIDIVDLIDRKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   G+ + F+       F+++++ LA   G+ +P      ++ ++ +  DL  
Sbjct: 56  FYHCFGCGAHGNAIDFVMEYDRLEFVDAIEELAGQLGLAVPREQGTGKRPDQGLSRDLYE 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A  F+   L+   DK+    YL+ RG+ S  +E F +G+APD    L    RQ   
Sbjct: 116 LMEEANLFYQSQLRQHTDKQKVVDYLEFRGLSSDVVEQFGIGFAPDGWDGLLGRYRQNLP 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +++K++ AG+LI  ++S   YDRFR+RL+FPIR  RG+V+ FGGR L    + KYLNSPE
Sbjct: 176 AQDKLLTAGMLI-ANDSGKRYDRFRDRLMFPIRDRRGRVVGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +              +++VEGYMDV++L Q G+   V+SL
Sbjct: 234 TPIFHKGNELYGLYELKQKHRDP----------QHVLIVEGYMDVVALAQFGIDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + + ++V C+DGD  G  AA++A++  L  L PG++V F+ L +GED
Sbjct: 284 GTSTTAEQFQLLVRSAKQVVCCYDGDRAGREAAWRALETALPLLKPGDQVKFMFLPQGED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD+ +R  GK AFE L+ +++ L + L+   + N       ++  L       I  ++D 
Sbjct: 344 PDTMVRKIGKEAFEALMQKAMLLPEFLFDTLSANH----GTDKGALAKQAIALIEKVQDT 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L+    + +  +L     + + +  G+     K    +  +G    L            
Sbjct: 400 VLQNLLLENLAHKLGMNSSEDLKKKLGFTVKQAKPLNAKGLQGRGTPL------------ 447

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                    +  L+ +P++     ++ A  R     ++ L + L     EQ      ++ 
Sbjct: 448 ------RLAIALLVQNPSLGFGLAKQPALDRLQMTGIE-LLNHLLDITREQ-TLNSAQLL 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           +   E      L +L +        +   E         ++Q L  +   + + ++ +E+
Sbjct: 500 EMHREHNQKSTLIKLAQWEHQVADENVLPE---------FKQTLI-WLNNQYIEQRYQEL 549

Query: 599 EKQIAQVTAKGEAEKTAILISILHEV 624
              + Q   K E  +   LISI+  +
Sbjct: 550 --SLKQALTKVEKMQLTKLISIMKGI 573


>gi|327458598|gb|EGF04946.1| DNA primase [Streptococcus sanguinis SK1057]
          Length = 602

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 142/634 (22%), Positives = 268/634 (42%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL V     +  ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGIPLAVETAGNDRLRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    ++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAAASDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHIQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      + +        
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPTHQSQPVVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +++HP ++  QY+   D  +D+ +LQ L+  L ++  E       
Sbjct: 468 RLSRLMKAENHIFHRMMHHP-LILNQYRLREDFVFDSEDLQALYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +  +   + +   +   +L +  
Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEFLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|260580979|ref|ZP_05848802.1| DNA primase [Haemophilus influenzae RdAW]
 gi|260092338|gb|EEW76278.1| DNA primase [Haemophilus influenzae RdAW]
          Length = 593

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 173/634 (27%), Positives = 289/634 (45%), Gaps = 55/634 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       FIE+++ LAA+AG+ +P         K +   + + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRVNHSGKPQANYQTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L++    F+ + L    + +   YL +RG+    IE F++G+ P++  ++       
Sbjct: 119 LYELMQEIATFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+IE G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLNS
Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PETI +HKGK LY  + AL             +    +++VEGYMDV++L Q GV   V+
Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T  Q++L+ + + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTSTTSEQIQLILRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD++IR YGK  FE+ I  +  L + ++   +    F+T + R +L       I+ I 
Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR      +  +L    Q  +              +        +  M         
Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPM--------- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     ++  L+ +P +++   +             ++   L +   +++     +
Sbjct: 456 --------RMVISLLMQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +      +   L+ L                +  D+   + Q      R   +   + 
Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +IE  IA+   +G   +   ++  L     Q  +
Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587


>gi|229545862|ref|ZP_04434587.1| DNA primase [Enterococcus faecalis TX1322]
 gi|256853087|ref|ZP_05558457.1| DNA primase [Enterococcus faecalis T8]
 gi|229309017|gb|EEN75004.1| DNA primase [Enterococcus faecalis TX1322]
 gi|256711546|gb|EEU26584.1| DNA primase [Enterococcus faecalis T8]
 gi|315029423|gb|EFT41355.1| DNA primase [Enterococcus faecalis TX4000]
          Length = 628

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 166/649 (25%), Positives = 291/649 (44%), Gaps = 49/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++     I ++IGQYV   +   N     Y   CPFH+E++PSF   + K  
Sbjct: 4   RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           ++CF C   G   +FL  + G SF ESV+R+A +  + +        +     + + +  
Sbjct: 59  FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L++L   A + +HH L      +    YL ERG+    IE F++G+AP  R  L +  + 
Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230
           +   E     +GL +  DN  T  DRF  R++FPI   +G VIAF GR L        E 
Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF+K + L+NF  A   ++K           + ++L EG+MDV++  Q+G
Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V++ V+S+GT+LT  Q+R L +++  +V+C+DGD+ G++A  +AI L+  +      +  
Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           V +    DPD ++R YG  AF+ L       +           R+ N   E+ +    L 
Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQ---QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             + +++    R  Y   I    Q      ++   +     R  ++  R R  +      
Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQRFYQDEMMPP 465

Query: 467 -------MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                   ++ +       +    E +LL  L+N   + Q   Q+L D  + ++E Q+L+
Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTI-QQLPDFSFAHDEYQELY 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L S     + F   +    L +    +L  ++         +   +E +         
Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +AL      + ++K + ++       + EAE T  +I +  ++  Q 
Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625


>gi|315147226|gb|EFT91242.1| DNA primase [Enterococcus faecalis TX4244]
          Length = 628

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 165/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++     I ++IGQYV   +   N     Y   CPFH+E++PSF   + K  
Sbjct: 4   RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           ++CF C   G   +FL  + G SF ESV+R+A +  + +        +     + + +  
Sbjct: 59  FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L++L   A + +HH L      +    YL ERG+    IE F++G+AP  R  L +  + 
Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230
           +   E     +GL +  DN  T  DRF  R++FPI   +G VIAF GR L        E 
Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF+K + L+NF  A   ++K           + ++L EG+MDV++  Q+G
Sbjct: 238 PKYLNSPETTLFNKRETLFNFDRARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V++ V+S+GT+LT  Q+R L +++  +V+C+DGD+ G++A  +AI L+  +      +  
Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           V +    DPD ++R YG  AF+ L       +           R+ N   E+ +    L 
Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460
             + +++    R  Y   I    Q        + +   +  +   R   Q+         
Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465

Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                   ++ +       +    E +LL  L+N   + Q   Q+L D  + ++E Q+L+
Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTV-QQLPDFSFAHDEYQELY 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L S     + F   +    L +    +L  ++         +   +E +         
Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +AL      + ++K + ++       + EAE T  +I +  ++  Q 
Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625


>gi|148380890|ref|YP_001255431.1| DNA primase [Clostridium botulinum A str. ATCC 3502]
 gi|153932187|ref|YP_001385199.1| DNA primase [Clostridium botulinum A str. ATCC 19397]
 gi|153936638|ref|YP_001388668.1| DNA primase [Clostridium botulinum A str. Hall]
 gi|168179369|ref|ZP_02614033.1| DNA primase [Clostridium botulinum NCTC 2916]
 gi|148290374|emb|CAL84501.1| DNA primase [Clostridium botulinum A str. ATCC 3502]
 gi|152928231|gb|ABS33731.1| DNA primase [Clostridium botulinum A str. ATCC 19397]
 gi|152932552|gb|ABS38051.1| DNA primase [Clostridium botulinum A str. Hall]
 gi|182669543|gb|EDT81519.1| DNA primase [Clostridium botulinum NCTC 2916]
          Length = 590

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 155/630 (24%), Positives = 283/630 (44%), Gaps = 41/630 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D ++ ++    I ++I   +       N     Y+  CPFH EKTPSF  +  K  Y
Sbjct: 2   ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ ++++      +F E+++ LA    + +     +       +  + ++  
Sbjct: 57  KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKENT--NNPKDKIYKINV 114

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F ++L    +K    Y   RG+    I+ F LGY+ DS   L  HL+ KG++E  
Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKSIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++ AGL+I   N  + YDRFRNR++FP+   RG+VI FGGR L      KYLNSPET++F
Sbjct: 173 MLSAGLIIRSKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG NLY    A+   +              +I+VEGYMD ++L Q G++N V+SLGTAL
Sbjct: 231 KKGINLYGLNYAVKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q RLL + + ++++ +D D  G  A  + +++       G  V  + +  G+DPD F
Sbjct: 280 TTNQARLLKRYADKVIISYDSDTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++ +GK A+ KL+ E+LPL++   K   ++ +     +  +        I ++ D   + 
Sbjct: 337 VKAHGKEAYLKLVKEALPLIEYKIKISKQDLNIGNKRQVIQYIDRYIKIIENL-DPVEKD 395

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + + +      Q    + +   +  +KN       G    ++++   K  L      
Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------GKEVNMLEAFGQKLYLEPAYIR 448

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  + N+  I +     + +        + ++ ++     +      +   + LC
Sbjct: 449 AERFILQLMFNYNNIYEYIKNSINEQDIIEETHKAIYKYIKDTLEDSNIQNKKLHIETLC 508

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +             ++      T      D  + +     L  +   L + KE + K+I
Sbjct: 509 NKNVET--------SKEWVNILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKENLLKKI 560

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +  A+G+ ++T  +   L +V   +  ++
Sbjct: 561 KEYEAQGKLDETIKMSQELIKVKKTLGAMK 590


>gi|307292034|ref|ZP_07571903.1| DNA primase [Enterococcus faecalis TX0411]
 gi|306497032|gb|EFM66580.1| DNA primase [Enterococcus faecalis TX0411]
          Length = 628

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 166/649 (25%), Positives = 291/649 (44%), Gaps = 49/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++     I ++IGQYV   +   N     Y   CPFH+E++PSF   + K  
Sbjct: 4   RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           ++CF C   G   +FL  + G SF ESV+R+A +  + +        +     + + +  
Sbjct: 59  FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVVDTPENQQRRS 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L++L   A + +HH L      +    YL ERG+    IE F++G+AP  R  L +  + 
Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230
           +   E     +GL +  DN  T  DRF  R++FPI   +G VIAF GR L        E 
Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF+K + L+NF  A   ++K           + ++L EG+MDV++  Q+G
Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V++ V+S+GT+LT  Q+R L +++  +V+C+DGD+ G++A  +AI L+  +      +  
Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           V +    DPD ++R YG  AF+ L       +           R+ N   E+ +    L 
Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQ---QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             + +++    R  Y   I    Q      ++   +     R  ++  R R  +      
Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQRFYQDEMMPP 465

Query: 467 -------MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                   ++ +       +    E +LL  L+N   + Q   Q+L D  + ++E Q+L+
Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTI-QQLPDFSFAHDEYQELY 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L S     + F   +    L +    +L  ++         +   +E +         
Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +AL      + ++K + ++       + EAE T  +I +  ++  Q 
Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625


>gi|331701384|ref|YP_004398343.1| DNA primase [Lactobacillus buchneri NRRL B-30929]
 gi|329128727|gb|AEB73280.1| DNA primase [Lactobacillus buchneri NRRL B-30929]
          Length = 608

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 145/641 (22%), Positives = 273/641 (42%), Gaps = 44/641 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P D I+++   + I +++ Q+V   +   N      +  CPFH+E+TPSF  ++ K  
Sbjct: 3   KIPEDVIEEIRSQVNIVDVVSQFVQLKQSGKNL-----FGLCPFHEERTPSFSVSEDKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------DPKIEKKEKIQT 115
           ++CFSC   G+   F+  L   SF E+V+++A +  + +           +   +   Q 
Sbjct: 58  FHCFSCGRGGNVFKFIMELQNVSFPEAVKKVAEMENISVDEKYFRESGSSQSSPENTQQK 117

Query: 116 DLIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            LI L E +   +HH L      +    YL +RG+    I  ++LGYAP  R  L+    
Sbjct: 118 ALIDLHEQSVKLYHHILTNTKMGQPALDYLHKRGLTDQTITTYQLGYAPAQR-LLKPFFD 176

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKY 233
           ++    + + ++GL  +  +     DRF +R+++PIR+  GQ IAF GR L+   +  KY
Sbjct: 177 ERKVDFQLLRKSGLFSEDQDG-NLRDRFVDRVMYPIRNGSGQTIAFSGRLLTTDSDMPKY 235

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +F+K K L+N   A + ++          +    IL EG+MDV++  QAG+++
Sbjct: 236 LNSPETDIFNKRKVLFNLDLARSNIR----------TGEPAILFEGFMDVITAFQAGIKS 285

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            ++S+GT+LTE Q+  + +++  +V+ +DGD PG +A  +AID           +  + +
Sbjct: 286 GIASMGTSLTEQQIYDIKRITREVVISYDGDTPGQKAIKRAID-SFNEQKSNLVMKIISI 344

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DPD FIR  G   F++LI  +   V+       +  + ++  ++          I+
Sbjct: 345 PDGMDPDEFIRKKGADDFKQLIDHAQAPVEFELNYLKKQYNLDSEIDQTNYIAEALKLIS 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +     R  Y   + D      Q    + +   R     A                + +
Sbjct: 405 RVDSGISRDLYLNRLADEFSVAKQLLQQQLAPLIRQPAPAAEPHQYH-----KQVQVVKQ 459

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K        E  L+  ++++  I  +    ++   + + + Q L+      F +   + 
Sbjct: 460 QKHFSLVEKAEMQLMNRMLHYHDIWLKV-SNVSGFAFVDEQYQMLYLLAEGYFTKFDDYN 518

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                  + E     LL  +D             E             L +      +  
Sbjct: 519 VATFSNLISEDSLQSLLVDIDML-----------ELPDNPTNAEIDSYLNILMHRAPVEE 567

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           + ++   ++ Q    G+ +K   L   + ++  Q  +++ Q
Sbjct: 568 KLKKKRAELKQAVKIGDVDKQRALTIEIVKLEQQ-KRMKQQ 607


>gi|229846615|ref|ZP_04466723.1| DNA primase [Haemophilus influenzae 7P49H1]
 gi|229810708|gb|EEP46426.1| DNA primase [Haemophilus influenzae 7P49H1]
          Length = 593

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 172/634 (27%), Positives = 290/634 (45%), Gaps = 55/634 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRPFIDDLLTKSDIVDVINMRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       FIE+++ LAA+AG+ +P         K +   + + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L++    F+ + L    + +   YL +RG+    IE F++G+ P++  ++       
Sbjct: 119 LYELMQEIATFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+IE G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLNS
Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PETI +HKGK LY  + AL             +    +++VEGYMDV++L Q GV   V+
Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T  Q++L+++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD++IR YGK  FE+ I  +  L + ++   +    F++ + R +L       I+ I 
Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSSKEGRGKLVALAAPLIHQIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR      +  +L    Q  +              +        +  M         
Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPM--------- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     ++  L+ +P +++   +             ++   L +   +++     +
Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +      +   L+ L                +  D+   + Q      R   +   + 
Sbjct: 507 ILEYFRNTSYSNPLEILATWDHL---------LDESDIINAFSQ----NYRRLNIQAIER 553

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +IE  IA+   +G   +   ++  L     Q  +
Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587


>gi|296532786|ref|ZP_06895465.1| DNA primase [Roseomonas cervicalis ATCC 49957]
 gi|296266894|gb|EFH12840.1| DNA primase [Roseomonas cervicalis ATCC 49957]
          Length = 629

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 177/555 (31%), Positives = 264/555 (47%), Gaps = 31/555 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P +F+ +L +  P++ LIG+ V   R         +  CCPFH EK+PSF+  D   
Sbjct: 1   MSLPPNFLDELRLRTPLAPLIGRSVKLTRAGRQ-----WRGCCPFHGEKSPSFYVYDDH- 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C   GD ++++    G SF E+V+RLAA AG+ +P   P+  K+E  Q DL  +
Sbjct: 55  -YHCFGCGAHGDAIAYVMQTQGASFPEAVERLAAEAGLEVPKATPQQAKREARQRDLHDV 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A++ F   L+    +    YL  RG+    I  F LG++   R +L   L+ +G   
Sbjct: 114 MAAASEAFQRRLRLPEGRGGLDYLLRRGLSEETIRRFGLGWSGGGRGALAADLKPQGIET 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            +++EAGL+  G+  +   D F NR++FPIR  RG++++FGGR L      KY+N PET 
Sbjct: 174 RQLVEAGLMRAGEGDSPPADLFFNRVMFPIRDRRGRIVSFGGRVL-GDGQPKYVNGPETE 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K +NLY    A     K           + +++VEGYMDV++L QAG    V+ LGT
Sbjct: 233 LFSKRRNLYALDLAREAAFK----------GAPVVVVEGYMDVIALHQAGFGGAVAPLGT 282

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE QL  LW+++P+ VLCFDGD  G RAA +A +L L  L P   ++F  L  GEDPD
Sbjct: 283 ALTEEQLAELWRIAPQPVLCFDGDKAGARAAARAAELALPLLSPERSLSFATLPAGEDPD 342

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           + +   G  AF  ++  + PL ++L+    E     TP+ RA L   L+     I D+ L
Sbjct: 343 TLVGRGGPAAFRAVLEAARPLSEVLYGMLAEKHPGTTPEARAALRHALEGAAGSIPDKFL 402

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y + + DR  +  +       G   +                             +P
Sbjct: 403 AGEYRRQLLDRFFESGRSRPQPGGGGRGFGGGGFGKGGFGKGGFGGRGRPGPPPLALPRP 462

Query: 481 SL--------REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD-----FV 527
            +        +   LL     HP +L E  +  A +       Q+L   L S        
Sbjct: 463 EIDPGQVRQEQARCLLAIAFAHPWLLPEVEEAFAALDLPEGLAQRLQHILLSWPHQHGLG 522

Query: 528 EQKYFLPEEIHQRLC 542
           EQ     E +   L 
Sbjct: 523 EQGRVEAEALLDHLQ 537


>gi|229550054|ref|ZP_04438779.1| DNA primase [Enterococcus faecalis ATCC 29200]
 gi|255972834|ref|ZP_05423420.1| DNA primase [Enterococcus faecalis T1]
 gi|256965162|ref|ZP_05569333.1| DNA primase [Enterococcus faecalis HIP11704]
 gi|257422657|ref|ZP_05599647.1| DNA primase [Enterococcus faecalis X98]
 gi|307273263|ref|ZP_07554509.1| DNA primase [Enterococcus faecalis TX0855]
 gi|312951454|ref|ZP_07770351.1| DNA primase [Enterococcus faecalis TX0102]
 gi|229304758|gb|EEN70754.1| DNA primase [Enterococcus faecalis ATCC 29200]
 gi|255963852|gb|EET96328.1| DNA primase [Enterococcus faecalis T1]
 gi|256955658|gb|EEU72290.1| DNA primase [Enterococcus faecalis HIP11704]
 gi|257164481|gb|EEU94441.1| DNA primase [Enterococcus faecalis X98]
 gi|306510248|gb|EFM79272.1| DNA primase [Enterococcus faecalis TX0855]
 gi|310630610|gb|EFQ13893.1| DNA primase [Enterococcus faecalis TX0102]
 gi|315152522|gb|EFT96538.1| DNA primase [Enterococcus faecalis TX0031]
 gi|315155800|gb|EFT99816.1| DNA primase [Enterococcus faecalis TX0043]
 gi|315158033|gb|EFU02050.1| DNA primase [Enterococcus faecalis TX0312]
          Length = 628

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 164/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++     I ++IGQYV   +   N     Y   CPFH+E++PSF   + K  
Sbjct: 4   RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           ++CF C   G   +FL  + G SF ESV+R+A +  + +        +     + + +  
Sbjct: 59  FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L++L   A + +HH L      +    YL ERG+    IE F++G+AP  R  L +  + 
Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230
           +   E     +GL +  DN  T  DRF  R++FPI   +G +IAF GR L        E 
Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNIIAFSGRLLKTADFPGDEM 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF+K + L+NF  A   ++K           + ++L EG+MDV++  Q+G
Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V++ V+S+GT+LT  Q+R L +++  +V+C+DGD+ G++A  +AI L+  +      +  
Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           V +    DPD ++R YG  AF+ L       +           R+ N   E+ +    L 
Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460
             + +++    R  Y   I    Q        + +   +  +   R   Q+         
Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465

Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                   ++ +       +    E +LL  L+N   + Q   Q+L D  + ++E Q+L+
Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTV-QQLPDFSFAHDEYQELY 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L S     + F   +    L +    +L  ++         +   +E +         
Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +AL      + ++K + ++       + EAE T  +I +  ++  Q 
Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625


>gi|300361839|ref|ZP_07058016.1| DNA primase [Lactobacillus gasseri JV-V03]
 gi|300354458|gb|EFJ70329.1| DNA primase [Lactobacillus gasseri JV-V03]
          Length = 604

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 148/635 (23%), Positives = 273/635 (42%), Gaps = 45/635 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI ++   + I ++I QYV  +++       DY   CPFH EKTPSF  ++ K F
Sbjct: 4   RIPEQFIDEVRNSVDIVDVISQYVSLEKKGK-----DYLGLCPFHQEKTPSFTVSEGKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESV+++A +A + +P    +  K       +    
Sbjct: 59  FKCFGCGKGGNVFKFLMYQDHLTFPESVKKVAELAHLQMPEGYGEAAKPLSPLKKMY--- 115

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             AT+F+ H L   +  +R   Y  +R +    ++ FK+GYAPDS   L  +L+QK +++
Sbjct: 116 RQATEFYQHILLTTKVGERALEYARKRELTDDLLKHFKVGYAPDSDNILLTYLKQKDYTD 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
           + + E+GL ++  +    +DRFR+RL+FP+    G  + F GR +S  +++ KY+NSPET
Sbjct: 176 DDLRESGLFVESQDG-QLFDRFRDRLMFPLGDESGYTVGFSGRRISNDKTIAKYMNSPET 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K K L++F  A    +          S   +IL EGYMDV++  +AG+Q+ V+S+G
Sbjct: 235 KIFNKSKLLFHFAEAKKAAR----------SEKHLILYEGYMDVIAAYKAGIQSGVASMG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT  Q+ +L +++P I++ +DGD PG+ AA +A  L     + G  +  ++L    DP
Sbjct: 285 TSLTTEQVYMLRRITPNILVNYDGDPPGIHAAERATKLFG--QVQGFNLGIIVLPENLDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YGK  +   +  +L   D L +R     + +   E+          I  + D  
Sbjct: 343 DEYVKKYGKEKYRAEVAGALSSTDFLLERLANQYNLHNDREKLAYITAAVQMIAGLNDPV 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-------SQRLMQSSLV 472
               Y   +  +     +          R  ++   H+            S+        
Sbjct: 403 AADLYLDKLAHQTGVTRESLKVTFVRERRKLQRARNHQQAYQASTLMENVSESAEPKEAQ 462

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
            G  S+  +     LL   I+          +     + +    KL  F           
Sbjct: 463 AGTDSETRNPALDRLLYLFIHSDEARDYLLSQ--QFLFPDERYAKLAEFWLKYHQTHDEA 520

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             +     + E        +L   + +  + +   + +  ++    +           + 
Sbjct: 521 EVKGFIDFIPE--------ELQGIIINMEMITMPPDYSKRELDDQLRALEKSK-----ID 567

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            Q  ++  Q+ +   K +      +   +  +  +
Sbjct: 568 EQLNDLLSQLKEAQRKQDNSLELEIAQKVIALRRK 602


>gi|238854654|ref|ZP_04644984.1| DNA primase [Lactobacillus jensenii 269-3]
 gi|282932955|ref|ZP_06338352.1| DNA primase [Lactobacillus jensenii 208-1]
 gi|238832444|gb|EEQ24751.1| DNA primase [Lactobacillus jensenii 269-3]
 gi|281302990|gb|EFA95195.1| DNA primase [Lactobacillus jensenii 208-1]
          Length = 595

 Score =  351 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 153/627 (24%), Positives = 273/627 (43%), Gaps = 40/627 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P DFI ++   I I ++I QYV  ++R       DY   CPFH EKTPSF  ++ K F
Sbjct: 4   RIPEDFINEVRNGINIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFTVSEDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+  SF+      SF E+V  +A +A + +P      + + K  + L ++ 
Sbjct: 59  FKCFGCGKGGNVFSFMQYKESLSFPEAVAEVAKMANLAMP---SSYQSEAKPLSPLKKVH 115

Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A +FFH   L +   +R   Y  ER +    +E F++GYAP+S + L   LR KG+ +
Sbjct: 116 QDACEFFHQVLLTSKAGERALNYAKERELSEDLLEHFQIGYAPNSDHLLLTFLRGKGYDD 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
             + ++GL      S   +DRFR+RL+FP+    G ++ F GR +S  +   KYLNSPET
Sbjct: 176 TVLAKSGLFSQN-ESGQLFDRFRDRLMFPLADEVGYIVGFSGRRISNNKELAKYLNSPET 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K K L++   A   ++          +   ++L EGYMDV++  +AG++  ++S+G
Sbjct: 235 EIFNKSKVLFHLKEAKKAVR----------TEKHLVLYEGYMDVIAAYKAGIKTGIASMG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ LL ++S  I++ +DGD+PG  A  +A  +       G +V  V L  G DP
Sbjct: 285 TSLTDDQVYLLKRISRNIIINYDGDEPGQHAIERASHMFETI--GGFQVGVVSLPEGLDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG   ++  +  ++   D   KR     +F+   E+          I  + +  
Sbjct: 343 DEYVKKYGPERYQDEVKGAITPTDFFLKRLELKYNFSNDREKLAYLDEAIKLIAPLTNPV 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y   +  ++              GR  +   R + Q          + V    +  
Sbjct: 403 ERDLYVTKLAKKVGVSEDSLKVSLLREGRRLRVAERRKKQYNFEPEEQSKTQVATLHNTN 462

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           P+L    LL   ++   +            + +    KL                   + 
Sbjct: 463 PALV--RLLYLFVHSEKVRNYLLGL--HFLFPDENYAKLAESWLDFEETHDNATINSFYD 518

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            + +         L   + +  + +   + +  +V       LA  KR     R+   ++
Sbjct: 519 FIPD--------DLKGIIDNMEMMTMPEDFSKEEVD----GLLASLKRLDN-QRKISNLQ 565

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHI 626
            Q+     + + ++    + ++     
Sbjct: 566 MQLQDAQRRQDEDQVLKTLEMIINAKR 592


>gi|184155320|ref|YP_001843660.1| DNA primase [Lactobacillus fermentum IFO 3956]
 gi|183226664|dbj|BAG27180.1| DNA primase [Lactobacillus fermentum IFO 3956]
          Length = 631

 Score =  351 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 156/656 (23%), Positives = 275/656 (41%), Gaps = 55/656 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR+ I  L   + I+++I Q +   ++  N         CPFH++ TPSF  N+ K ++
Sbjct: 4   IPRETIDQLRNQVDIADVISQDIQLKKQGKNL-----MGHCPFHEDATPSFSVNEEKQYF 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRLI 121
           YCFSCH  GD  S+L      SF+E+V+++A  AGV LP        +     T L RL 
Sbjct: 59  YCFSCHRSGDVFSYLEQAHDLSFMEAVEQVATTAGVDLPRESNGPSGESASPNTPLYRLH 118

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAP--DSRYSLREHLRQKGF 178
           E A+  +HH L N    +    YL +RG+    I  F LG+AP       L ++  QKG 
Sbjct: 119 EEASRLYHHVLVNTVAGQPALNYLTKRGMSRELIGQFNLGFAPARGEEDLLVKYFTQKGI 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK---GESVKYLN 235
             + +  +GL  +       +DRF +R+I+PI+++ GQ IAF GR L+K     + KYLN
Sbjct: 179 DYQLMRASGLFTEDQTG-QLHDRFFDRVIYPIKNANGQPIAFSGRLLTKKATENAPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F+K + L+N   A    +K             + L EG+MDV+S   AGV++ +
Sbjct: 238 SPETPIFNKRRTLFNLDQAKKAARK----------EGHLTLFEGFMDVISAFGAGVRSGI 287

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GT+ T+ Q+ ++ + + ++ +C+DGD  G  A  +A+ +          +  V L  
Sbjct: 288 ASMGTSFTDEQVAVIARTTDKLTICYDGDAAGQNAINRALTM---LAASRLTLRVVQLPA 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVD-MLWKRETENRSFNTPDERAELEIHLKNCINH 414
           G DPD +++  G+  F++ +  +             +  +     E           +  
Sbjct: 345 GMDPDEYVQANGQAKFQEYLAHAEETPTAFRLHFLKQGLNLANQSELLHYVEAALREVAK 404

Query: 415 IKDQKLRYYYSQAIR--------------DRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
           + D   R  Y Q +                 L               R  ++    R Q 
Sbjct: 405 VTDPVERDLYIQQLAKDYHLNPATLTGQVQELAATAAPRPAYPESSPRQPRQAGTRRYQS 464

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P       S     L  K  L +  LL  + ++PA ++     + +  + +   Q L +
Sbjct: 465 TPPTTTTAPSTQAPPLLGKVELAQQRLLREMFHNPA-VRSHVGAIENFHFVDRPYQLLDA 523

Query: 521 FLFSDFVE--QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                            ++   L +     ++ Q++++V                V +  
Sbjct: 524 AAKEQLQRTGADEVDVAQLMGELTDAKLRTIVGQIEQRVVPQA-----------AVDETV 572

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              LA+      + +Q  E    + +  A  + +    L   L ++  Q  +++++
Sbjct: 573 DDCLAVLVDVAPIEQQIREKTAALQEAAALNDQQLITKLTIELIDLRRQEQKMKTE 628


>gi|118594359|ref|ZP_01551706.1| DNA primase [Methylophilales bacterium HTCC2181]
 gi|118440137|gb|EAV46764.1| DNA primase [Methylophilales bacterium HTCC2181]
          Length = 574

 Score =  351 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 164/626 (26%), Positives = 290/626 (46%), Gaps = 54/626 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI+D+L    + ++I + V   +   N     + ACCPFH EK+PSF  + SK FY
Sbjct: 2   IPESFIQDMLNRTDVVDVIDKRVQLKKAGAN-----FVACCPFHQEKSPSFSVSPSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G  ++FL    G +F+E+V ++A+  G+ +P       KK K    L   ++
Sbjct: 57  HCFGCGAHGSAITFLIEFEGLTFVEAVHQIASSLGLTVPNESRADPKKIKENFGLEEAMK 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           +AT F+  +L+++   +   YL  RG+     + F +G+APD   +L      K + +  
Sbjct: 117 IATQFYQKALRSS--PKAIEYLKSRGLTGAVAKEFSIGFAPDGWQNLENAF--KQYDDAS 172

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           + +AGL I  +     YDRFRNR++FPI + +GQVI FGGR ++  ++ KY NSPET LF
Sbjct: 173 LEKAGL-IQKNEKGKYYDRFRNRIMFPIINEKGQVIGFGGRVINPDDTPKYYNSPETPLF 231

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY    A   ++             ++++VEGYMDV++L Q   +NVV++LGTA 
Sbjct: 232 QKSYELYGLIHARKPIR----------EKGYVVVVEGYMDVVALTQHDFRNVVATLGTAT 281

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T Y ++ L + +  IV CFDGD  G  AA++A+   L  +    R+ F+ L    DPDSF
Sbjct: 282 TIYHIKKLMRYTQDIVFCFDGDKAGQTAAWRAMMNALSAVTDNVRLKFLFLPDNHDPDSF 341

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           IR Y K AF++L  ++LPL + + +R T     ++ +++  L   ++  +N +   K+  
Sbjct: 342 IREYSKEAFDRLAEDALPLSEYIVRRLTLTNDLSSQEKKVRLLNDVEPILNEMTAPKVHL 401

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
           +  + I   +    ++                R + +K      ++  ++   ++ K ++
Sbjct: 402 FLRKKIAQLVGLDMEEITHILKNAKATQPSAQRIKLEKKVQMNPIRRFILFIIINPKLAI 461

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQK-LWSFLFSDFVEQKYFLPEEIHQRL 541
            E   L                     + +N  +  L   +    +E        +   +
Sbjct: 462 AEDLRL---------------------FSSNANEHILAKLIIEIALENNGNNAAVMLHLI 500

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             +    +L++++ Q+          E           +AL    + +LLS      + +
Sbjct: 501 SSKVDESVLREMEGQIVKIDGGLNLEEE---------VKALRNSLQKKLLS---STNKTK 548

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQ 627
           + ++  K     T    + L  +  +
Sbjct: 549 LGELQEKSLGSLTDEEKAFLKNIRRK 574


>gi|297180104|gb|ADI16327.1| DNA primase (bacterial type) [uncultured bacterium HF130_01F24]
          Length = 606

 Score =  351 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 176/621 (28%), Positives = 278/621 (44%), Gaps = 40/621 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI +LL    I +++ + V   ++  N     Y ACCPFH EKTPSF  N  + FY
Sbjct: 5   IPQSFIDNLLNRTDIVDVVDKRVPLKKQGNN-----YTACCPFHQEKTPSFSVNQERQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIRLI 121
           YCF C   G+ + F+       F  +V+ LA  AG+ +P  + + + K+  Q T L  ++
Sbjct: 60  YCFGCGAGGNAIGFVMNFDKSDFPVAVETLAKDAGLEVPREESQRQIKQNRQHTSLYDVL 119

Query: 122 EVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              + F+   L K+ + +    YL  RG+  +    F +G+AP    +L +       S+
Sbjct: 120 SSTSAFYQIQLRKHPQKEAAVQYLKSRGLTGNVAASFAIGFAPPGWDNLLKEFGPSAESQ 179

Query: 181 EKIIEAGLLID------------GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
             ++ AGL I+              N    YDRFRNR+IFPIR SRG+ IAFGGR L   
Sbjct: 180 NLLLGAGLTIERSKDKPSNKMQNRINEYDYYDRFRNRIIFPIRDSRGRTIAFGGRVL-GE 238

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
           E  KYLNSPET +F K   LY  +      +K  +          IILVEGYMDV++L Q
Sbjct: 239 EKPKYLNSPETAVFQKSSELYGLYELKKSGEKFSK----------IILVEGYMDVIALSQ 288

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
            G++N V++LGTA     L  ++K  P ++ CFDGDD G +AA++A++  L H+  G +V
Sbjct: 289 MGIKNSVATLGTATNSRHLGKIFKQVPELIFCFDGDDAGEKAAWRALETALPHMQDGRQV 348

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
            F+ L  GEDPD+++R  GK  F   +  + PL D L++  + +    T + +A L    
Sbjct: 349 KFLFLPNGEDPDTYVRTIGKRQFLIEVSSAKPLEDFLFEHLSADLDTTTGEGKARLSNLA 408

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           K+ ++ I D        + +   +    +     +S        +    D    S  +  
Sbjct: 409 KSHLSKIPDGIYSRLMLEKLAGLVGLPAESIAKLYSKSASSHPNDNIASDGIFSSTSVAG 468

Query: 469 SSLVKGKLSKKP-----SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
             L  G  SK+             +  L+  P I     ++L  +    +E +KL   L 
Sbjct: 469 DFLKVGSQSKREDSFYQKPASIKAIELLLQKPEIALSLTKDLNVLHSAEDEGRKLLISLI 528

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               +        +         G    Q+      +       E    +  Q     L+
Sbjct: 529 EMIQKDPKTDIFTMLGYCYGSNLGNQFTQI-----FSDEKITPKEGLQGEFIQIIDNILS 583

Query: 584 LYKRFRLLSRQKEEIEKQIAQ 604
             +R   L + K E+  ++ +
Sbjct: 584 DMRRKLDLVKLKTELRAKVIE 604


>gi|256961964|ref|ZP_05566135.1| DNA primase [Enterococcus faecalis Merz96]
 gi|293383034|ref|ZP_06628952.1| DNA primase [Enterococcus faecalis R712]
 gi|293389478|ref|ZP_06633935.1| DNA primase [Enterococcus faecalis S613]
 gi|312907496|ref|ZP_07766487.1| DNA primase [Enterococcus faecalis DAPTO 512]
 gi|312910114|ref|ZP_07768961.1| DNA primase [Enterococcus faecalis DAPTO 516]
 gi|256952460|gb|EEU69092.1| DNA primase [Enterococcus faecalis Merz96]
 gi|291079699|gb|EFE17063.1| DNA primase [Enterococcus faecalis R712]
 gi|291081095|gb|EFE18058.1| DNA primase [Enterococcus faecalis S613]
 gi|310626524|gb|EFQ09807.1| DNA primase [Enterococcus faecalis DAPTO 512]
 gi|311289387|gb|EFQ67943.1| DNA primase [Enterococcus faecalis DAPTO 516]
          Length = 628

 Score =  351 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 165/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++     I ++IGQYV   +   N     Y   CPFH+E++PSF   + K  
Sbjct: 4   RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           ++CF C   G   +FL  + G SF ESV+R+A +  + +        +     + + +  
Sbjct: 59  FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L++L   A + +HH L      +    YL ERG+    IE F++G+AP  R  L +  + 
Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230
           +   E     +GL +  DN  T  DRF  R++FPI   +G VIAF GR L        E 
Sbjct: 179 EQLDEALFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF+K + L+NF  A   ++K           + ++L EG+MDV++  Q+G
Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V++ V+S+GT+LT  Q+R L +++  +V+C+DGD+ G++A  +AI L+  +      +  
Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           V +    DPD ++R YG  AF+ L       +           R+ N   E+ +    L 
Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460
             + +++    R  Y   I    Q        + +   +  +   R   Q+         
Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQAQRSVQRQERQQFYQDEMMPP 465

Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                   ++ +       +    E +LL  L+N   + Q   Q+L D  + ++E Q+L+
Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTI-QQLPDFSFAHDEYQELY 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L S     + F   +    L +    +L  ++         +   +E +         
Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +AL      + ++K + ++       + EAE T  +I +  ++  Q 
Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625


>gi|226950365|ref|YP_002805456.1| DNA primase [Clostridium botulinum A2 str. Kyoto]
 gi|226841581|gb|ACO84247.1| DNA primase [Clostridium botulinum A2 str. Kyoto]
          Length = 590

 Score =  351 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 155/630 (24%), Positives = 283/630 (44%), Gaps = 41/630 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D ++ ++    I ++I   +       N     Y+  CPFH EKTPSF  +  K  Y
Sbjct: 2   ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ ++++      +F E+++ LA    + +     +       +  + ++  
Sbjct: 57  KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKENT--NNPKDKIYKINV 114

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F ++L    +K    Y   RG+    I+ F LGY+ DS   L  HL+ KG++E  
Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKSIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++ AGL+I   N  + YDRFRNR++FP+   RG+VI FGGR L      KYLNSPET++F
Sbjct: 173 MLSAGLIIRSKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG NLY    A+   +              +I+VEGYMD ++L Q G++N V+SLGTAL
Sbjct: 231 KKGINLYGLNYAVKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q RLL + + ++++ +D D  G  A  + +++       G  V  + +  G+DPD F
Sbjct: 280 TTNQARLLKRYADKVIISYDSDTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++ +GK A+ KL+ E+LPL++   K   ++ +     +  +        I ++ D   + 
Sbjct: 337 VKAHGKEAYLKLVKEALPLIEYKIKISKQDLNIGNKRQAIQYIDRYIKIIENL-DPVEKD 395

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + + +      Q    + +   +  +KN       G    ++++   K  L      
Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------GKEVNMLEAFGQKLYLEPAYIR 448

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  + N+  I +     + +        + ++ ++     +      +   + LC
Sbjct: 449 AERFILQLMFNYNNIYEYIKNSINEQDIIEETHKAIYKYIKDTLEDSNIQNKKLHIETLC 508

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +             ++      T      D  + +     L  +   L + KE + K+I
Sbjct: 509 NKNVET--------SKEWVNILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKENLLKKI 560

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +  A+G+ ++T  +   L +V   +  ++
Sbjct: 561 KEYEAQGKLDETIKMSQELIKVKKTLGAMK 590


>gi|167622944|ref|YP_001673238.1| DNA primase [Shewanella halifaxensis HAW-EB4]
 gi|167352966|gb|ABZ75579.1| DNA primase [Shewanella halifaxensis HAW-EB4]
          Length = 576

 Score =  351 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 170/630 (26%), Positives = 296/630 (46%), Gaps = 58/630 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+    I +LI   V   +   N       ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELVARTDIVDLIDPKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIR 119
           FY+CF C   G+ + F+       F+++++ LA   G+ +P      + +++    DL +
Sbjct: 56  FYHCFGCGAHGNAIDFVMEYDRLDFVDAIEELAGQLGLEVPREQGTGKPRDQELSRDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A+ FF   L+   DK+    YL  RG+    +E F +G+APD    L    RQ   
Sbjct: 116 LMEEASLFFQSQLRQHTDKQKVLDYLKHRGLSKEVVEHFNIGFAPDGWDGLLSRYRQNQD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S++K++ AG++I+ D+    YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 176 SQDKLLTAGMVIENDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      ++  R          +++VEGYMDV++L Q  V   V+SL
Sbjct: 234 TPIFHKGNELYGLYELKQRHREPQR----------VLIVEGYMDVVALAQFDVDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  ++ C+DGD  G  AA++A++  L  L PGN+V F+ L  GED
Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDKAGKEAAWRALETALPLLKPGNQVRFMFLPEGED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD+ +R  GK  FE  I +++ L + L++   +       ++++ L  +    I  ++D 
Sbjct: 344 PDTLVRQIGKQEFEAQIDQAMALPEFLFENLIKTY---GNEDKSVLAKNAIKLIEKVQDT 400

Query: 419 KLRYYYSQAIRDRLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L+    + +  +L+     +   + +   +  +K  +H+  KG    L           
Sbjct: 401 VLQSLLLEDLAHKLRMNGADELKRKFNFSTKAAEKPNQHKALKGRGTPL----------- 449

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                     +  L+ HP + ++  ++          L+ +                 ++
Sbjct: 450 -------RLAIALLVQHPHLGEKLPEQ--------PALKHIQMAGIDLLTLVLDLTRGQV 494

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +      E  +  ++      L     +    ++ Q  ++ L ++   + L ++ +E
Sbjct: 495 ---ITSAQLLEQFRGDNQFSTLKKLTQWDHQVADENLLQKLKETL-VWLNNQYLEQRYQE 550

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +      +      E+   L  ++  +  +
Sbjct: 551 L-----SMKKNLTKEERLQLSKLISVIKNK 575


>gi|253997428|ref|YP_003049492.1| DNA primase [Methylotenera mobilis JLW8]
 gi|253984107|gb|ACT48965.1| DNA primase [Methylotenera mobilis JLW8]
          Length = 595

 Score =  351 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 166/620 (26%), Positives = 277/620 (44%), Gaps = 54/620 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI++LL  + I ++I + V   +   N     Y ACCPFH+EK+PSF  + +K FY
Sbjct: 18  IPESFIQELLNRVDIVDVIDKSVPLKKAGAN-----YSACCPFHNEKSPSFTVSPTKQFY 72

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIRLI 121
           +CF C   G  + F+    G SF++++  LA + G+ +P      +K        L   +
Sbjct: 73  HCFGCGAHGTSVGFIMEYQGLSFVDAIHDLAKMVGMTVPQEVRDSDKPAPKVVVGLQEAL 132

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           + A +F+   LK +   R   YL  RG+       F++GYAP    +L+    Q      
Sbjct: 133 QQAANFYKAELKKS--PRAIEYLKARGLSGQVAAKFQVGYAPAGWQNLQSVFPQYEN--- 187

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           + +    L+  +     YDRFR+R++FPI   +GQVI FGGR ++  ++ KY NSPET L
Sbjct: 188 EALTVAGLVVENEQGRRYDRFRDRIMFPIHDQKGQVIGFGGRVINPEDTPKYYNSPETPL 247

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KG  LY  F A   ++ + R           ++VEGYMDV++L Q G++  V++LGTA
Sbjct: 248 FQKGHELYGLFLARRAIRDAGRA----------LVVEGYMDVVALAQYGIEYAVAALGTA 297

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T Y +  L + +  IV CFDGD+ G  AA++A    L  L  G +++F+ L +  DPDS
Sbjct: 298 TTPYHITKLTRQADEIVFCFDGDNAGRTAAWRAAMNALPALTDGLKLSFLFLPKEHDPDS 357

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           ++R +GK  FE  I  ++PL   + +  +E+    + ++R       +  +  I   +  
Sbjct: 358 YVREFGKEKFEAEIKSAMPLSQYILQHLSEDNPLQSQEDRVRFLNEAEPIMQQISAPRSA 417

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
            Y  + + +    L Q    E     +    N      K    R   S   +  L     
Sbjct: 418 MYLRKKVAE----LAQLSADEMQALLKLPNLNKAPMKAKPKLTRTTMSLQKRFGL----- 468

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                    L+ HP + QE   EL   R   ++   L   +    +   +  P  + + L
Sbjct: 469 --------MLLMHPELAQEDDLELLSER---DDADALLRQVIEICLLHPHSKPAVLLREL 517

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL--SRQKEEIE 599
             +    +L +L R++             + D     Q+     ++ + +   RQ   + 
Sbjct: 518 ESKIDANVLPELQRELTL-----------LDDTLDHAQELAGARQQLQAVHTQRQSASLL 566

Query: 600 KQIAQVTAKGEAEKTAILIS 619
            +I++            L+ 
Sbjct: 567 ARISEKPLSALTADEIALLK 586


>gi|256619026|ref|ZP_05475872.1| DNA primase [Enterococcus faecalis ATCC 4200]
 gi|257082588|ref|ZP_05576949.1| DNA primase [Enterococcus faecalis E1Sol]
 gi|307289066|ref|ZP_07569022.1| DNA primase [Enterococcus faecalis TX0109]
 gi|256598553|gb|EEU17729.1| DNA primase [Enterococcus faecalis ATCC 4200]
 gi|256990618|gb|EEU77920.1| DNA primase [Enterococcus faecalis E1Sol]
 gi|306499775|gb|EFM69136.1| DNA primase [Enterococcus faecalis TX0109]
 gi|315163976|gb|EFU07993.1| DNA primase [Enterococcus faecalis TX1302]
          Length = 628

 Score =  351 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 165/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++     I ++IGQYV   +   N     Y   CPFH+E++PSF   + K  
Sbjct: 4   RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           ++CF C   G   +FL  + G SF ESV+R+A +  + +        +     + + +  
Sbjct: 59  FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L++L   A + +HH L      +    YL ERG+    IE F++G+AP  R  L +  + 
Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230
           +   E     +GL +  DN  T  DRF  R++FPI   +G VIAF GR L        E 
Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF+K + L+NF  A   ++K           + ++L EG+MDV++  Q+G
Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V++ V+S+GT+LT  Q+R L +++  +V+C+DGD+ G++A  +AI L+  +      +  
Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           V +    DPD ++R YG  AF+ L       +           R+ N   E+ +    L 
Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460
             + +++    R  Y   I    Q        + +   +  +   R   Q+         
Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465

Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                   ++ +       +    E +LL  L+N   + Q   Q+L D  + ++E Q+L+
Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTI-QQLPDFSFAHDEYQELY 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L S     + F   +    L +    +L  ++         +   +E +         
Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +AL      + ++K + ++       + EAE T  +I +  ++  Q 
Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625


>gi|315150575|gb|EFT94591.1| DNA primase [Enterococcus faecalis TX0012]
          Length = 628

 Score =  351 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 165/649 (25%), Positives = 288/649 (44%), Gaps = 49/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++     I ++IGQYV   +   N     Y   CPFH+E++PSF   + K  
Sbjct: 4   RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           ++CF C   G   +FL  + G SF ESV+R+A +  + +        +     + + +  
Sbjct: 59  FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L++L   A + +HH L      +    YL ERG+    IE F++G+AP  R  L +  + 
Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230
           +   E     +GL +  DN  T  DRF  R++FPI   +G VIAF GR L        E 
Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF+K + L+NF  A   ++K           + ++L EG+MDV++  Q+G
Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V++ V+S+GT+LT  Q+R L + +  +V+C+DGD+ G++A  +AI L+  +      +  
Sbjct: 288 VKSGVASMGTSLTNEQIRRLERGAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           V +    DPD ++R YG  AF+ L       +           R+ N   E+ +    L 
Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460
             + +++    R  Y   I    Q        + +   +  +   R   Q+         
Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465

Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                   ++ +       +    E +LL  L+N   + Q   Q+L D  + ++E Q+L+
Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTI-QQLPDFSFAHDEYQELY 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L S     + F   +    L +    +L  ++         +   +E +         
Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +AL      + ++K + ++       + EAE T  +I +  ++  Q 
Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625


>gi|86608987|ref|YP_477749.1| DNA primase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557529|gb|ABD02486.1| DNA primase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 646

 Score =  351 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 158/658 (24%), Positives = 279/658 (42%), Gaps = 56/658 (8%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M+  P DFI+ +     +  ++ + V   ++  N     +   CPFH++  PSF  + SK
Sbjct: 1   MSGLPPDFIQLVRQKADLVEVVAEKVVLRKQGKN-----FVGLCPFHNDHKPSFQVSPSK 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-------IEKKEK 112
             Y CFSC   GD L F+      SF E+V+ LA    +PLP  +P+        E++  
Sbjct: 56  QIYKCFSCGAGGDVLRFVMQTEHLSFAEAVRHLARRYHIPLPTRNPEAQPLGSLDERELS 115

Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172
            +  L+ ++ +A DF+ H+L++        YL  R +    ++ F++G+AP    SL E+
Sbjct: 116 HREKLLEILAMAADFYRHALRSQLGSAARQYLHSRHLSEETLQKFQIGFAPPGWQSLYEY 175

Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
            +  K    + + EAGLL+     +  YDRFRNR++ PI   +G+VI F GR L +    
Sbjct: 176 LVNHKRQPVKLLEEAGLLVPRQQGSGHYDRFRNRIMLPIFDVQGRVIGFAGRALGESGQP 235

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF+K + +Y    A + + K          +  +++VEGY DV++L QAGV
Sbjct: 236 KYLNSPETELFNKSQVVYGLNFARDAIAK----------ADQVLVVEGYFDVIALHQAGV 285

Query: 292 QNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRV 348
              V+++GTALT +Q++ L + +   R++L FD D  GL AA +AI+ +      G   +
Sbjct: 286 AYAVAAMGTALTPHQVKTLLRYTQSKRLILNFDADRAGLNAASRAIEAIEEQARRGEIEL 345

Query: 349 NFVLLSRGEDPDSFIRCYGKTAF--------EKLIVESLPLVDMLWKRETENRSFNTPDE 400
             + L  G+D D F+R Y  +A         + LI ++   +D   ++    R  +   +
Sbjct: 346 RILTLPEGKDADEFLREYKSSAPPTRAVAELQTLIEQAPLWLDWRIEQVLAGRDLSRATD 405

Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
             +    L   +  +   + R  Y   + + L +   +   +     R   +  R    +
Sbjct: 406 FQQARQALVQLLAGLG-GQWRSLYLHKVAELLSRGNGRLSRDLEEDLRRAVRQYRWAKPQ 464

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQKL 518
            PS       L            E+ LL   ++      E  Q L   ++++     ++L
Sbjct: 465 QPSLNKGSKLLQS----------ESHLLQIFLHFGEYRHEIRQTLLERELQFSFRPHREL 514

Query: 519 WSFLFSDFVEQKYFLPEEIHQRL-------CERGFGELLKQLDRQVRDAGLWSATTEANI 571
           W  +      Q     +E             +    E L  L     +  +        +
Sbjct: 515 WQRILELISAQPELEEQEETLLTALRTLCAQDEQLNERLSHLLWLDENTRVALMRPRMVV 574

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                  +  +   KR+R  ++  ++   +     A             +  +  Q+ 
Sbjct: 575 RAAIANMELEIR-QKRYRYWTQLWDQAFSEGNTALAAQYQASIQQEYQAIQALQRQVQ 631


>gi|326387390|ref|ZP_08208999.1| DNA primase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208046|gb|EGD58854.1| DNA primase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 631

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 200/649 (30%), Positives = 306/649 (47%), Gaps = 29/649 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+    ++ +L   I +S LIG+ V   +        ++ ACCPFH+EK+PSF  ND KG
Sbjct: 1   MSLSPQWLDELRSRISLSGLIGRTVRVQKAGR-----EFKACCPFHNEKSPSFTINDEKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF C   GD + +++   G  F+E+V+ LA++AG+ +P  DP+  +K +    L   
Sbjct: 56  FYHCFGCGAHGDAIRWMTDHQGLPFLEAVKELASLAGMEVPAPDPRAARKAEKAKTLHDA 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A DFF  +L          YL  RG  +  IE F  GYAPDSR +L+  L   G   
Sbjct: 116 MAGAQDFFRRNLAGDGGGAARSYLATRGFPAAIIETFGFGYAPDSRGALKSALAGFGE-- 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL--SKGESVKYLNSPE 238
            ++IEAGLLI        YDRFR RL+ PI   RG+VIAFGGR L   K ++ KYLNSP+
Sbjct: 174 AQLIEAGLLI-AVEGKEPYDRFRGRLMLPIHDVRGRVIAFGGRILSAEKTDAPKYLNSPD 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF KG+ LYN   A    + S R          +++VEGYMDV++L  AG+   V+ L
Sbjct: 233 TPLFDKGRTLYNLHRAAPAARSSGR----------MVVVEGYMDVVALAAAGIAEAVAPL 282

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE Q+  LW++ P  VLCFDGD  G RAA +A+   L  L PG+ ++ V L  G D
Sbjct: 283 GTALTEEQIERLWQVVPCPVLCFDGDAAGQRAARRAMTRALPLLKPGHSLSIVTLPGGMD 342

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD  ++  G  A E L+    PL++ +W+ E +    +TP+ +A L+  L      I   
Sbjct: 343 PDDIVKKQGAAAMEALLSAGTPLIEAVWQAERDAAPLDTPEAKAGLKARLIEQTETIAHP 402

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG-------PSQRLMQSSL 471
            +R  Y + + DR   L            R        + QK        P   L     
Sbjct: 403 DIRALYRRDLLDRFGALAYPSRERSQFTPRQAAPRQAQQGQKRGGGRWQPPEPPLPPEEA 462

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            + +   +     AA+L  L   P+ +    + LA +   + +L +L   L       + 
Sbjct: 463 ERLRRYGQSEALLAAVLAGLATRPSEIARHAEALAHLAPSDPDLARLLDALLDLADSPES 522

Query: 532 FLPEEIHQR-LCERGFGELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALALYKRFR 589
              E+  Q  L  R    +L++ + ++  A  +      A +        +A+ L   F 
Sbjct: 523 GESEDEDQEGLESRSIAPILRERNVRLPTAEDYPDLPFGAIVGGDASVLAEAVDLLVEFP 582

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            +     +   +     ++    +   L+     +  ++ Q+    A +
Sbjct: 583 RVEAALAQANARCEHDLSEESFAEQQRLVQRRLALRARLGQMGRARAAL 631


>gi|260664403|ref|ZP_05865255.1| DNA primase [Lactobacillus jensenii SJ-7A-US]
 gi|260561468|gb|EEX27440.1| DNA primase [Lactobacillus jensenii SJ-7A-US]
          Length = 601

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 153/627 (24%), Positives = 273/627 (43%), Gaps = 40/627 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P DFI ++   I I ++I QYV  ++R       DY   CPFH EKTPSF  ++ K F
Sbjct: 10  RIPEDFINEVRNGINIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFTVSEDKQF 64

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+  SF+      SF E+V  +A +A + +P      + + K  + L ++ 
Sbjct: 65  FKCFGCGKGGNVFSFMQYKESLSFPEAVAEVAKMANLAMP---SSYQSEAKPLSPLKKVH 121

Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A +FFH   L +   +R   Y  ER +    +E F++GYAP+S + L   LR KG+ +
Sbjct: 122 QDACEFFHQVLLTSKAGERALNYAKERELSEDLLEHFQIGYAPNSDHLLLTFLRGKGYDD 181

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
             + ++GL      S   +DRFR+RL+FP+    G ++ F GR +S  +   KYLNSPET
Sbjct: 182 TVLAKSGLFSQN-ESGQLFDRFRDRLMFPLADEVGYIVGFSGRRISNNKELAKYLNSPET 240

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K K L++   A   ++          +   ++L EGYMDV++  +AG++  ++S+G
Sbjct: 241 EIFNKSKVLFHLKEAKKAVR----------TEKHLVLYEGYMDVIAAYKAGIKTGIASMG 290

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ LL ++S  I++ +DGD+PG  A  +A  +       G +V  V L  G DP
Sbjct: 291 TSLTDDQVYLLKRISRNIIINYDGDEPGQHAIERASHMFETI--GGFQVGVVSLPEGLDP 348

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG   ++  +  ++   D   KR     +F+   E+          I  + +  
Sbjct: 349 DEYVKKYGPERYQDEVKGAITPTDFFLKRLELKYNFSNDREKLAYLDEAIKLIAPLTNPV 408

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y   +  ++              GR  +   R + Q          + V    +  
Sbjct: 409 ERDLYVTKLAKKVGVSEDSLKVSLLREGRRLRVAERRKKQYNFEPEEQSKTQVATLHNTN 468

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           P+L    LL   ++   +            + +    KL                   + 
Sbjct: 469 PALV--RLLYLFVHSEKVRNYLLGL--HFLFPDENYAKLAESWLDFEETHDNATINSFYD 524

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            + +         L   + +  + +   + +  +V       LA  KR     R+   ++
Sbjct: 525 FIPD--------DLKGIIDNMEMMTMPEDFSKEEVD----GLLASLKRLDN-QRKISNLQ 571

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHI 626
            Q+     + + ++    + ++     
Sbjct: 572 MQLQDAQRRQDEDQVLKTLEMIINAKR 598


>gi|240170987|ref|ZP_04749646.1| DNA primase [Mycobacterium kansasii ATCC 12478]
          Length = 646

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 136/652 (20%), Positives = 244/652 (37%), Gaps = 41/652 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I +++G YV   R             CPFH+EK+PSFH   + G 
Sbjct: 9   RISDRDIAAIRDGARIEDVVGDYVQLRRAGA----DSLRGLCPFHNEKSPSFHVRPNHGH 64

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD  +F+  +   SF+E+V+ LA   G  +         +     ++ L+ 
Sbjct: 65  FHCFGCGEGGDVYAFIQKIEHVSFVEAVELLADRIGYTISYTGAATSVQRDRGSRSRLLA 124

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A +F+  +L++       +YL +R  D+ A   F  G+AP    SL +HL++KGF 
Sbjct: 125 ANAAAAEFYAVALESDEAAPARHYLTQRNFDAQAARRFGCGFAPSGWDSLTKHLQRKGFE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            +++  AGL           DRF  RL++PIRSS G+VI FG R L   + +  KY+N+P
Sbjct: 185 FKELEAAGLSRQ--GRHGPMDRFHRRLLWPIRSSAGEVIGFGARRLFDDDPMEAKYVNTP 242

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K   ++    A   + K              ++VEGY DV+++  AGV   V+S
Sbjct: 243 ETLLYKKSSVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVAS 292

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDG----DDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            GTA  +  L +L +L               D        A+  +        +    + 
Sbjct: 293 CGTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDAAGRAAALKALDGEQNLAGQSFVAVA 352

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  A   L+    PL +   +        N+ + R          + 
Sbjct: 353 PDGMDPCDLRLASGDAALRDLVARRTPLFEFAIRSALAETDLNSAEGRVAALRRCVPMVG 412

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEH-----------SGYGRYWKKNARHRDQKGP 462
            IKD  LR  Y++ +   +       + +             G G    K  R   Q+ P
Sbjct: 413 QIKDPMLRDEYARQLAGWVGWDDVAQVVDRVRSQAKTPAKVPGRGHPGSKAPRRATQQPP 472

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
                + +  +          +   L + + +PA+    +  L    + +     + + +
Sbjct: 473 DAPSAEPAAARPDPRDPTLWPQREALKSALQYPALAGPVFDTLTVESFTHPGYCAVRAAI 532

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            +           +    +  +    L   L  ++    +      A   D    Y   +
Sbjct: 533 EAAGGTSAGVTGAQWMDMVARQTTSPLTTGLINELAVEAI------AVDDDKLPRYIGGV 586

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               +   + RQ  E++ ++ +++     ++   L   L  +      +  Q
Sbjct: 587 LARLQEVWMGRQIAEVKSKLQRMSPIEHGDEYHALFGDLVAMEAYRRSLLEQ 638


>gi|29376086|ref|NP_815240.1| DNA primase [Enterococcus faecalis V583]
 gi|227553322|ref|ZP_03983371.1| DNA primase [Enterococcus faecalis HH22]
 gi|256762452|ref|ZP_05503032.1| DNA primase [Enterococcus faecalis T3]
 gi|256958943|ref|ZP_05563114.1| DNA primase [Enterococcus faecalis DS5]
 gi|257078974|ref|ZP_05573335.1| DNA primase [Enterococcus faecalis JH1]
 gi|257419259|ref|ZP_05596253.1| DNA primase [Enterococcus faecalis T11]
 gi|294779114|ref|ZP_06744525.1| DNA primase [Enterococcus faecalis PC1.1]
 gi|307271056|ref|ZP_07552339.1| DNA primase [Enterococcus faecalis TX4248]
 gi|30179818|sp|P52308|PRIM_ENTFA RecName: Full=DNA primase
 gi|29343548|gb|AAO81310.1| DNA primase [Enterococcus faecalis V583]
 gi|227177551|gb|EEI58523.1| DNA primase [Enterococcus faecalis HH22]
 gi|256683703|gb|EEU23398.1| DNA primase [Enterococcus faecalis T3]
 gi|256949439|gb|EEU66071.1| DNA primase [Enterococcus faecalis DS5]
 gi|256987004|gb|EEU74306.1| DNA primase [Enterococcus faecalis JH1]
 gi|257161087|gb|EEU91047.1| DNA primase [Enterococcus faecalis T11]
 gi|294453839|gb|EFG22230.1| DNA primase [Enterococcus faecalis PC1.1]
 gi|306512554|gb|EFM81203.1| DNA primase [Enterococcus faecalis TX4248]
 gi|315033930|gb|EFT45862.1| DNA primase [Enterococcus faecalis TX0017]
 gi|315036940|gb|EFT48872.1| DNA primase [Enterococcus faecalis TX0027]
 gi|315169075|gb|EFU13092.1| DNA primase [Enterococcus faecalis TX1341]
 gi|315575905|gb|EFU88096.1| DNA primase [Enterococcus faecalis TX0309B]
 gi|315580558|gb|EFU92749.1| DNA primase [Enterococcus faecalis TX0309A]
 gi|323480686|gb|ADX80125.1| DNA primase [Enterococcus faecalis 62]
          Length = 628

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 165/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++     I ++IGQYV   +   N     Y   CPFH+E++PSF   + K  
Sbjct: 4   RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           ++CF C   G   +FL  + G SF ESV+R+A +  + +        +     + + +  
Sbjct: 59  FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L++L   A + +HH L      +    YL ERG+    IE F++G+AP  R  L +  + 
Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230
           +   E     +GL +  DN  T  DRF  R++FPI   +G VIAF GR L        E 
Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF+K + L+NF  A   ++K           + ++L EG+MDV++  Q+G
Sbjct: 238 PKYLNSPETTLFNKRETLFNFDRARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V++ V+S+GT+LT  Q+R L +++  +V+C+DGD+ G++A  +AI L+  +      +  
Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           V +    DPD ++R YG  AF+ L       +           R+ N   E+ +    L 
Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460
             + +++    R  Y   I    Q        + +   +  +   R   Q+         
Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465

Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                   ++ +       +    E +LL  L+N   + Q   Q+L D  + ++E Q+L+
Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTI-QQLPDFSFAHDEYQELY 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L S     + F   +    L +    +L  ++         +   +E +         
Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +AL      + ++K + ++       + EAE T  +I +  ++  Q 
Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625


>gi|257086782|ref|ZP_05581143.1| DNA primase [Enterococcus faecalis D6]
 gi|256994812|gb|EEU82114.1| DNA primase [Enterococcus faecalis D6]
 gi|315027305|gb|EFT39237.1| DNA primase [Enterococcus faecalis TX2137]
          Length = 624

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 165/648 (25%), Positives = 289/648 (44%), Gaps = 49/648 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++     I ++IGQYV   +   N     Y   CPFH+E++PSF   + K  
Sbjct: 4   RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           ++CF C   G   +FL  + G SF ESV+R+A +  + +        +     + + +  
Sbjct: 59  FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L++L   A + +HH L      +    YL ERG+    IE F++G+AP  R  L +  + 
Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230
           +   E     +GL +  DN  T  DRF  R++FPI   +G VIAF GR L        E 
Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF+K + L+NF  A   ++K           + ++L EG+MDV++  Q+G
Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V++ V+S+GT+LT  Q+R L +++  +V+C+DGD+ G++A  +AI L+  +      +  
Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           V +    DPD ++R YG  AF+ L       +           R+ N   E+ +    L 
Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460
             + +++    R  Y   I    Q        + +   +  +   R   Q+         
Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465

Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                   ++ +       +    E +LL  L+N   + Q   Q+L D  + ++E Q+L+
Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTV-QQLPDFSFAHDEYQELY 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L S     + F   +    L +    +L  ++         +   +E +         
Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             +AL      + ++K + ++       + EAE T  +I +  ++  Q
Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQ 624


>gi|326204488|ref|ZP_08194345.1| DNA primase [Clostridium papyrosolvens DSM 2782]
 gi|325985281|gb|EGD46120.1| DNA primase [Clostridium papyrosolvens DSM 2782]
          Length = 605

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 176/632 (27%), Positives = 299/632 (47%), Gaps = 40/632 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           +P D I+++ +   I  +I +YV  +++  N     Y+  CPFH+EKT SF     K  +
Sbjct: 5   FPDDLIEEIRVSNDIVGVISEYVKLEKKGKN-----YFGKCPFHNEKTASFSVEPVKQIF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
           +CF C   G+ L F+ ++    F E+++ LA  A + +P +    + ++K  ++ +L+ +
Sbjct: 60  HCFGCGKGGNVLHFIMSIENLDFPEALRFLADRAKIQIPDITEGVRNDEKAGLKKELLEI 119

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A  FF  +L N ++   + YL  R I    I  F +GYA D    L +HL+ KGFS+
Sbjct: 120 NLEAARFFRDNLNNEKNNIPNSYLMNRKIQKQTIAKFGIGYAEDRYDILYKHLKAKGFSD 179

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             I ++GL+I  + S   YDRFR R++FPI   RG VIAFGGR L   +  KY+NSPET 
Sbjct: 180 SSIKQSGLVIYKEESGKIYDRFRGRIMFPIFDIRGNVIAFGGRVLDSSQP-KYMNSPETE 238

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++ KGK+LY    A +   K             +IL EGYMDV+SL Q G+ N V+ LGT
Sbjct: 239 VYQKGKHLYALNFAKSACSK------------QLILSEGYMDVISLHQCGIINSVAPLGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q RLL K +  IVL FD D  G  AA++++DL       G  V  + +  G+DPD
Sbjct: 287 ALTENQGRLLKKYTEEIVLSFDSDSAGQAAAFRSLDL---LNEIGCNVRVLTIPSGKDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FI+ +G T F++L+  S  L+D        +   +T + +          ++ I +   
Sbjct: 344 EFIKAHGVTEFKQLVDRSKGLLDFKLGSLKNDIDTSTNEGKVRFLDKAVLILDKIDNNVE 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP--SQRLMQSSLVKGKLSK 478
           +  Y + + D L    Q  ++E +   +    N + +  +    S+  ++ S V     +
Sbjct: 404 KELYVKKLSDELGVSTQSILSEIAKQQKEADSNFKQQVPRSNNFSRNPIRKSTVVKNQEE 463

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LL T+     +       ++   ++++E++  + F       +   L  EI 
Sbjct: 464 WLVRLQLMLLATICIDNNVYFSIKDVISWDSFESDEVKNAFDFAVERIESKAGILTGEIL 523

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            +L   G  E    + +           +++   D ++     +     F L  R+ + I
Sbjct: 524 NKLSP-GMAESFANIVQ-----------SQSIFEDNKKAALDIIRKIDLFSLEERKNQII 571

Query: 599 EKQIAQVTAKGEAEKTAILISIL---HEVHIQ 627
           E + +    +G+ E     +S +     +  +
Sbjct: 572 ELKKSSDLTEGDVELLNRELSSIVSNIAIKKK 603


>gi|149184446|ref|ZP_01862764.1| DNA primase [Erythrobacter sp. SD-21]
 gi|148831766|gb|EDL50199.1| DNA primase [Erythrobacter sp. SD-21]
          Length = 615

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 184/625 (29%), Positives = 289/625 (46%), Gaps = 30/625 (4%)

Query: 14  HIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDH 73
              +S +IG+     +        ++ ACCPFH+EKTPSF+ ND KGFY+CF C   GD 
Sbjct: 2   RTTLSAVIGRTTRLTKAGR-----EFKACCPFHNEKTPSFYVNDEKGFYHCFGCEAHGDA 56

Query: 74  LSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLK 133
           + +L+   G  F+++V+ LAA AG+ +P  DP+  ++ + +  L  +   A ++F   L 
Sbjct: 57  IRWLTDQRGMPFMDAVKELAAEAGMEVPAPDPRAAERAEKRASLHDVTAAAQEWFVRELA 116

Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193
           + +      YL  RG     +  F  G+AP+ R +L+  L Q  F E  +IEAG+ I+ +
Sbjct: 117 SPQGAEARAYLKRRGFSDSVVREFGFGFAPEDRQALKSALSQ--FDERMLIEAGMRIEVE 174

Query: 194 NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGKNLYNFF 252
           +    YDRFR RL+ PI+ +RG+VIAFGGR L       KYLNSP+T LF KG+ LYN  
Sbjct: 175 DKD-PYDRFRGRLMLPIQDTRGRVIAFGGRILDSDAYGPKYLNSPDTPLFDKGRTLYNLH 233

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
            A    ++S R          I++VEGYMD ++L  AG+   V+ LGTALTE Q+ LLW+
Sbjct: 234 RAAPATRQSGR----------IVVVEGYMDAIALANAGIAEAVAPLGTALTENQIELLWR 283

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFE 372
              R +LCFDGD+ G RAA +AI  VL  L PG+ ++ V +  G+DPD  ++  G  A E
Sbjct: 284 QVERPILCFDGDNAGQRAAMRAIGRVLPKLRPGHSLSIVRMPAGKDPDDLLKESGVGAME 343

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
           +L+     L+D LW  E + +   +P+E+A L+  L      I+   +R  Y + + DR 
Sbjct: 344 ELLSSPASLLDTLWAFERDAQPLTSPEEKAGLKARLLAHTETIQHDDIRALYRKELLDRF 403

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
                          R   K               ++ L +            A++  L+
Sbjct: 404 SAFAFPPRAPREFKPRGEWKKGGFNAHPPRLSPETEARLKRAMAGGSRDALAVAVIHGLL 463

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
             P  +      L+     +  +      L +            I           L K 
Sbjct: 464 RFPDTILSHEAALSRFAASDRNVGPAIDSLIAAAETLDSPAESPI----------SLPKG 513

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           L     +          + VD R+   +A++L      L         +  +   +G   
Sbjct: 514 LPAPPANTHFAFLDKGTDPVDAREDLAEAVSLLVERPALEAALAAATARF-ETDPEGAFA 572

Query: 613 KTAILISILHEVHIQIHQIESQEAM 637
           +   L+    E   ++ ++ S++A 
Sbjct: 573 EQQRLLKRKLEFEARLGKMASRKAA 597


>gi|257085221|ref|ZP_05579582.1| DNA primase [Enterococcus faecalis Fly1]
 gi|256993251|gb|EEU80553.1| DNA primase [Enterococcus faecalis Fly1]
          Length = 628

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 165/649 (25%), Positives = 290/649 (44%), Gaps = 49/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++     I ++IGQYV   +   N     Y   CPFH+E++PSF   + K  
Sbjct: 4   RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           ++CF C   G   +FL  + G SF ESV+R+A +  + +        +     + + +  
Sbjct: 59  FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L++L   A + +HH L      +    YL ERG+    IE F++G+AP  R  L +  + 
Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230
           +   E     +GL +  DN  T  DRF  R++FPI   +G VIAF GR L        E 
Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF+K + L+NF  A   ++K           + ++L EG+MDV++  Q+G
Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V++ V+S+GT+LT  Q+R L +++  +V+C+DGD+ G++A  +AI L+  +      +  
Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           V +    DPD ++R YG  AF+ L       +           R+ N   E+ +    L 
Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460
             + +++    R  Y   I    Q        + +   +  +   R   Q+         
Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465

Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                   ++ +       +    E +LL  L+N   + Q   Q+L D  + ++E Q+L+
Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTI-QQLPDFSFAHDEYQELY 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L S  +  + F   +    L +    +L  ++         +   +E +         
Sbjct: 525 FLLESYAILHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +AL      + ++K + ++       + EAE T  +I +  ++  Q 
Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625


>gi|187778481|ref|ZP_02994954.1| hypothetical protein CLOSPO_02075 [Clostridium sporogenes ATCC
           15579]
 gi|187772106|gb|EDU35908.1| hypothetical protein CLOSPO_02075 [Clostridium sporogenes ATCC
           15579]
          Length = 590

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 156/630 (24%), Positives = 283/630 (44%), Gaps = 41/630 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D ++ ++    I ++I   +       N     Y+  CPFH EKTPSF  +  K  Y
Sbjct: 2   ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ ++++      +F E+++ LA    + +     +   +   +  + R+  
Sbjct: 57  KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKEN--RNNPKDKIYRINV 114

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F ++L    +K    Y   RG+    I+ F LGY+ DS   L  HL+ KG++E  
Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKVIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++ AGL+I G N  + YDRFRNR++FP+   RG+VI FGGR L      KYLNSPET++F
Sbjct: 173 MLSAGLIIKGKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG NLY    A+   +              +I+VEGYMD ++L Q G++N V+SLGTAL
Sbjct: 231 KKGINLYGLNYAVKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q RLL + + ++++ +D D  G  A  + +++       G  V  + +  G+DPD F
Sbjct: 280 TTNQARLLKRYADKVIISYDADTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++ +GK ++ KL+ E+LPL++   K   ++ +     +  +        I  + D   + 
Sbjct: 337 VKAHGKESYLKLVKEALPLIEYKIKISRQDLNIRDKRQAIQYIDRYIKIIEGL-DPVEKD 395

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + + +      Q    + +   +  +KN            ++++   K  L      
Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------EKEVNMLEAFGQKLYLEPAYIR 448

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  + N+  I +     + +        + ++ ++     +      +   + LC
Sbjct: 449 AERFILQLMFNYNNIYEYIKNNINEQDIIEETHKTIYKYIKDTLEDSNIQNKKLHIETLC 508

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +             ++      T      D  + +     L  +   L + KE++ K+I
Sbjct: 509 NKNVET--------SKEWVNILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKEDLLKKI 560

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +  AKG  ++T  +   L +V   +  ++
Sbjct: 561 KEYEAKGNLDETIKMSQELIKVKKTLGAMK 590


>gi|145220184|ref|YP_001130893.1| DNA primase [Prosthecochloris vibrioformis DSM 265]
 gi|145206348|gb|ABP37391.1| DNA primase [Chlorobium phaeovibrioides DSM 265]
          Length = 633

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 158/640 (24%), Positives = 276/640 (43%), Gaps = 38/640 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   I ++     I ++I  Y+       N     + A  PF  EKTPSF  +  K  Y
Sbjct: 2   IPDATIDEVRQSADIVDIISDYLTLQPSGRN-----FKALSPFTREKTPSFIVSTDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CFS    G+  SF+  +    F E+V+ +A  AG+ +  +     KK + +    R + 
Sbjct: 57  KCFSTGKGGNVFSFVMEMEKIPFPEAVELVAKRAGLDMKRLFGDSRKKNEEEDSKTRTLR 116

Query: 123 VATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A   FH SL   +      Y    RG+ +  I  F LGYAP    +L +  +++G +  
Sbjct: 117 WAARLFHSSLNADKGNEGYAYLAARRGLTAATINSFGLGYAPPGWDTLLKAAKKEGIAHN 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPETI 240
            +   GL+ +     + YD FRNR++FPI S  GQV+ FGGRTL  + ++ KYLNSPE+ 
Sbjct: 177 HLQFLGLITENRQKNSWYDTFRNRVMFPIFSIGGQVVGFGGRTLETRDDTPKYLNSPESP 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K K LY    A   ++           S   ILVEGYMDV++L QAG+QN V+S GT
Sbjct: 237 LFEKSKLLYGLHAAKQEIR----------QSETAILVEGYMDVIALHQAGLQNAVASCGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT +Q ++L + + R++  +D D  G ++    +++    L        +LL  G+DPD
Sbjct: 287 SLTRHQAKILKRYTKRVLFVYDADPAGRKSMMSGVEI---LLAENIAPVILLLPPGDDPD 343

Query: 361 SFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           SF++  G+  F +L   + L +VD      TE  +F   +++A+    + + I  + D  
Sbjct: 344 SFVQREGREKFLELADTAGLGVVDFQILFHTEAGNFGNHEQKADAIRSIVHTILLVPDPV 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y   + ++     Q      +   +  ++++R   ++ P    +           +
Sbjct: 404 RRELYLGELSEKTGISLQALHELRNIEQKTTQRDSRPEREEKPDPAAVIPP-------AE 456

Query: 480 PSLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVE-----QK 530
            S+ E   L  L++  A      +  A     +   +   +++++ L + +         
Sbjct: 457 VSILEKTFLKALLDSAAYGNTVLEFAASHETMLVLQSPAAREIFAHLVARYHTLSEDPDA 516

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                     L       L   L  +   +  W    + +  + R+     L  ++   +
Sbjct: 517 RIDVASAISLLESTDARNLAIGLLIEQPVSNRWLEKGDQHEENARRCLAMFLDAFRNL-I 575

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           L+    E E+    +  + E E+   L      +  +I +
Sbjct: 576 LAPLLLEKEQVTESIRTETETEREIELSKAKIALDRKIRK 615


>gi|257416056|ref|ZP_05593050.1| DNA primase [Enterococcus faecalis AR01/DG]
 gi|257157884|gb|EEU87844.1| DNA primase [Enterococcus faecalis ARO1/DG]
          Length = 628

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 165/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++     I ++IGQYV   +   N     Y   CPFH+E++PSF   + K  
Sbjct: 4   RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           ++CF C   G   +FL  + G SF ESV+R+A +  + +        +     + + +  
Sbjct: 59  FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQKRS 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L++L   A + +HH L      +    YL ERG+    IE F++G+AP  R  L +  + 
Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230
           +   E     +GL +  DN  T  DRF  R++FPI   +G VIAF GR L        E 
Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF+K + L+NF  A   ++K           + ++L EG+MDV++  Q+G
Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V++ V+S+GT+LT  Q+R L +++  +V+C+DGD+ G++A  +AI L+  +      +  
Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVKATNRAIQLLQENSHFDLSI-- 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           V +    DPD ++R YG  AF+ L       +           R+ N   E+ +    L 
Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460
             + +++    R  Y   I    Q        + +   +  +   R   Q+         
Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465

Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                   ++ +       +    E +LL  L+N   + Q   Q+L D  + ++E Q+L+
Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTV-QQLPDFSFAHDEYQELY 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L S     + F   +    L +    +L  ++         +   +E +         
Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +AL      + ++K + ++       + EAE T  +I +  ++  Q 
Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625


>gi|227514581|ref|ZP_03944630.1| DNA primase [Lactobacillus fermentum ATCC 14931]
 gi|227086992|gb|EEI22304.1| DNA primase [Lactobacillus fermentum ATCC 14931]
          Length = 631

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 156/656 (23%), Positives = 275/656 (41%), Gaps = 55/656 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR+ I  L   + I+++I Q +   ++  N         CPFH++ TPSF  N+ K ++
Sbjct: 4   IPRETIDQLRNQVDIADVISQDIQLKKQGKNL-----MGHCPFHEDATPSFSVNEEKQYF 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRLI 121
           YCFSCH  GD  S+L      SF+E+V+++A  AGV LP        +     T L RL 
Sbjct: 59  YCFSCHRSGDVFSYLEQAHDLSFMEAVEQVATTAGVDLPRESNGPSGESASPNTPLYRLH 118

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAP--DSRYSLREHLRQKGF 178
           E A+  +HH L N    +    YL +RG+    I  F LG+AP       L ++  QKG 
Sbjct: 119 EEASRLYHHVLVNTVAGQPALNYLTKRGMSRELIGQFNLGFAPARGEEDLLVKYFTQKGI 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK---GESVKYLN 235
             + +  +GL  +       +DRF +R+I+PI+++ GQ IAF GR L+K     + KYLN
Sbjct: 179 DYQLMRASGLFTEDQTG-QLHDRFFDRVIYPIKNANGQPIAFSGRLLTKKATENAPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F+K + L+N   A    +K             + L EG+MDV+S   AGV++ +
Sbjct: 238 SPETPIFNKRRTLFNLDQAKKAARK----------EGHLTLFEGFMDVISAFGAGVRSGI 287

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GT+ T+ Q+ ++ + + ++ +C+DGD  G  A  +A+ +          +  V L  
Sbjct: 288 ASMGTSFTDEQVAVIARTTDKLTICYDGDAAGQNAINRALTM---LAASRLTLRVVQLPA 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVD-MLWKRETENRSFNTPDERAELEIHLKNCINH 414
           G DPD +++  G+  F++ +  +             +  +     E           +  
Sbjct: 345 GMDPDEYVQANGQAKFQEYLAHAEETPTAFRLHFLKQGLNLANQSELLHYVEAALREVAK 404

Query: 415 IKDQKLRYYYSQAIR--------------DRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
           + D   R  Y Q +                 L               R  ++    R Q 
Sbjct: 405 VTDPVERDLYIQQLAKDYHLNPATLTGQVQELAATAAPRPAYPENSPRQPRQAGTRRYQS 464

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P       S     L  K  L +  LL  + ++PA ++     + +  + +   Q L +
Sbjct: 465 TPPTTTTAPSTQAPPLLGKVELAQQRLLREIFHNPA-VRSHVGAIENFHFVDRPYQLLDA 523

Query: 521 FLFSDFVE--QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                            ++   L +     ++ Q++++V                V +  
Sbjct: 524 AAKEQLQRTGADEVDVAQLMGELTDAKLRTIVGQIEQRVVPQA-----------AVDETV 572

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              LA+      + +Q  E    + +  A  + +    L   L ++  Q  +++++
Sbjct: 573 DDCLAVLVDVAPIEQQIREKTAALQEAAALNDQQLITKLTIELIDLRRQEQKMKTE 628


>gi|294787810|ref|ZP_06753054.1| DNA primase [Simonsiella muelleri ATCC 29453]
 gi|294484103|gb|EFG31786.1| DNA primase [Simonsiella muelleri ATCC 29453]
          Length = 586

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 191/636 (30%), Positives = 289/636 (45%), Gaps = 64/636 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+DFI DL+    I +LI QYV   +   N     Y ACCPFH EK+PSF  + SK FY
Sbjct: 2   IPQDFIDDLIARTDIVDLIDQYVPLKKSGAN-----YMACCPFHKEKSPSFSVSPSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-------KKEKIQT 115
           +CFSC   G  ++F+    G  F+E+VQ LA   G+ +P V    E        K++ Q 
Sbjct: 57  HCFSCGEHGSAIAFVMKYQGLGFVEAVQLLADRVGMVVPNVRGNNEDSAAHRAAKKQQQQ 116

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L   ++ A +F+H  L    + +   Y ++RG+ S  I  + +GYAPD    L +  + 
Sbjct: 117 TLENTVQAACEFYHQQL--PLNSQAIDYTNKRGLTSDIITHYGIGYAPDGWQPLAQIFQP 174

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
                       L    DN    YDRFR+RL+FPIR+  GQVI FGGR L      KYLN
Sbjct: 175 YPSVSLVESGMVL----DNEGKHYDRFRHRLMFPIRNVSGQVIGFGGRVL-DDSKPKYLN 229

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP+T LF KGKNLY  + A   ++ + R          I++VEGYMDV++L Q GV   V
Sbjct: 230 SPDTPLFDKGKNLYGLYEARQAIKDAGR----------ILVVEGYMDVVALAQFGVGYAV 279

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T   +++L++ +  +  CFDGD  G +AA++A++  L  L     +NF+ L  
Sbjct: 280 AALGTATTAEHIKILFRQTDSVYFCFDGDGAGRKAAWRALENALPQLKDDKSLNFLFLPE 339

Query: 356 GEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
             DPDSF+R +G+  FE+ L+ ES PL    W   TEN   +  + +AEL       +N 
Sbjct: 340 NHDPDSFVRAFGRKRFEEALLHESKPLSVYFWDALTENVDISHQEGKAELVKSAAPLLNQ 399

Query: 415 I-KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           + +   L Y   Q +  +                      A+       S R  ++  + 
Sbjct: 400 MTQAPALAYLLKQELSTKTGIDPSNLAYLMGQAAPRRHVEAKSYQLPPESFRQPETLTLV 459

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K            +  L+ +P   Q       D    + +L  L   L   +   ++ L
Sbjct: 460 QKQ-----------IRALLLNPQWAQYVV--FPDYLPLSGDLNALL-ALAKFYQNHQHNL 505

Query: 534 ---PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                +  +      +  +L  + R + D   W   ++A   D   G  +          
Sbjct: 506 YMGTAQALEFFRNTPYANVLAFVFRHITD---WDDNSDAAQQDFIDGIIK---------- 552

Query: 591 LSRQKEEIEKQIAQVTAKGE-AEKTAILISILHEVH 625
           LS+Q +   +QI Q+  KG    +   L+  L  + 
Sbjct: 553 LSQQLKN--EQIEQLKQKGNLNAQEMKLLMQLITMR 586


>gi|319947857|ref|ZP_08022044.1| DNA primase [Dietzia cinnamea P4]
 gi|319438463|gb|EFV93396.1| DNA primase [Dietzia cinnamea P4]
          Length = 675

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 138/687 (20%), Positives = 246/687 (35%), Gaps = 78/687 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +     I  ++G+YV                  PF DEKTPSFH     G+
Sbjct: 4   RIPEQDIAAIRERTRIEEIVGEYVALKPAGA----DSLKGLSPFKDEKTPSFHVRPQHGY 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CFS    GD  +FL  +    F+E+V++LA   G  +         +     ++ L +
Sbjct: 60  FHCFSTGEGGDVFAFLMKMEHIGFVEAVEQLADRIGYRISYEGGGQVVQRDRGTRSRLAQ 119

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
               A  F+   L ++   +    +L +RG D    + F  GYAP    ++ +HL ++GF
Sbjct: 120 ANAAAQKFYAERLAQDPEAETARTFLTDRGFDMAQAQHFGCGYAPAGWDTMSKHLMRQGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
             +++  AGL     +  T  DRF  RL++PIR+  G+VI FG R L + ++  KY+N+P
Sbjct: 180 EPKELEAAGL-SKTSSRGTLIDRFHRRLLWPIRNLAGEVIGFGARKLFEDDTLGKYMNTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K + L+    A   +    R           ++VEGY DV+++  AGV   V++
Sbjct: 239 ETMLYKKSQVLFGLDLAKREIASQRRA----------VVVEGYTDVMAMHAAGVTTAVAA 288

Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA  E  L  L             I+  FDGD+ G +AA +A            R   
Sbjct: 289 CGTAFGEDHLSTLRRLMLDDNYFRGEIIYTFDGDEAGKKAALRAFSGDQQFSG---RTFV 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP    +  G  A   L+   +P+ +   +   E+   +  + R E       
Sbjct: 346 AVAPPGLDPCDLRQTKGDAAVRDLVSARVPMFEFAIRSMLEDYDLDHAEGRVEALRRTVP 405

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK---------- 460
            +  I+D  LR  Y++ +   +       +          K  AR               
Sbjct: 406 VVADIRDSSLRDEYARQLAGWVGWDDPATVVRRVREESRKKGRARSAGAGPGPRRRGPGG 465

Query: 461 ---------------------------------GPSQRLMQSSLVKGKLSKKPSLREAAL 487
                                             P    +   +            +   
Sbjct: 466 PGGGARPGWDAAERAGGGRGRGGYDDDEVGGGDAPRTPEVPKGVPIPAPGDPVLWPQREA 525

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           +   + +P +    +  L D  Y +     +   L                  + +    
Sbjct: 526 VKAALQYPGLAGPLFDSLPDECYTHPAYAAIAEALSRAGGCSAGKSGVNWVSEVSQGLED 585

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E L++L   +    L  +       +    Y   +    +   +S Q  +++ ++ +++ 
Sbjct: 586 EGLRRLVGVLAVETLRVS------EEALPRYISGVLARLQEVWVSGQIADLKSKVQRMSP 639

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQ 634
             + E  + L   L  +      +  Q
Sbjct: 640 AEDPEGYSALFGDLVALEEYRRGLLEQ 666


>gi|311742940|ref|ZP_07716748.1| DNA primase [Aeromicrobium marinum DSM 15272]
 gi|311313620|gb|EFQ83529.1| DNA primase [Aeromicrobium marinum DSM 15272]
          Length = 634

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 147/658 (22%), Positives = 259/658 (39%), Gaps = 51/658 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I+ +     I  ++ QYV       NA  G     CPFHDEKTPSF+   ++GFY
Sbjct: 4   IKDEDIQLVRERARIDEVVEQYVTL----RNAGGGARKGLCPFHDEKTPSFNVRPAQGFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDLI 118
           +CF C   GD + FL  + G  F E+V+RLA   G+ +   +        +  + +  L+
Sbjct: 60  HCFGCGAGGDSIKFLMEIEGLPFAEAVERLAGRYGIQVRYEEDGQRSGPRRDPRQRQRLL 119

Query: 119 RLIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
               +A +F+  +L  + + +     + +RG  S   E F +G+AP S  +L  HL  +G
Sbjct: 120 EAHRMAGEFYAAALTTSAEAQPGRQLVTDRGFTSAHAETFGMGWAPRSGTALTAHLTGRG 179

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235
           F+EE+++  GL          +D F+ RL++PIR   G++I FG R + + + +  KY+N
Sbjct: 180 FTEEELLVGGLARRSSRGM--FDVFQGRLLWPIREMTGEIIGFGARRMFEDDFMSGKYVN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           + ET ++ K + LY    A   +          + SS  ++VEGY DV++   AGV   +
Sbjct: 238 TSETPIYKKSQVLYGIDLARRQI----------SGSSQAVVVEGYTDVMACHVAGVTTAI 287

Query: 296 SSLGTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           ++ GTA  E   R+L ++          ++  FDGD+ G RAA KA +          + 
Sbjct: 288 ATCGTAFGEGHTRILRRIMLDHDAFRGEVIFTFDGDEAGQRAAVKAFEGDQEFAG---QT 344

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
              +  RG DP       G  A  +LI   +PL   +     E    +  D+R +     
Sbjct: 345 YVAIEPRGMDPCDLRMADGDPAVRELIASRVPLYRFVLDSILERYDLDRGDQRVDAVREA 404

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-----GPS 463
              +  I+D      + + I  R+     +  TEH        + A     +      P 
Sbjct: 405 VGLVVAIRDHAKVEAFLREIAGRVGVEVDQVRTEHRRSAASGARPAARPAPRRSSVDAPD 464

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
              + +              E   L  +  +P ++     +L +  + +           
Sbjct: 465 DTPVPAVPAGPPFGAPEFTDEREALKAIAQYPHLVGSVADDLGENDFTHPV--------- 515

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA-NIVDVRQGYQQAL 582
                      E            ++ + LD  +R     +A                  
Sbjct: 516 -ARRLWAALAAEPWPTAEDASWIPKVAESLDEDLRPILAVAAVEPLRARETSTAAMVAVS 574

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
               +   L RQ  +++ ++ +     EAE    +   L  +  Q   +  +   ++G
Sbjct: 575 VFRLQALTLGRQVADLKSKLQRTNPVDEAESYNRMFGELIALEQQHRVLRDR--AVDG 630


>gi|224476670|ref|YP_002634276.1| putative DNA primase DnaG [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421277|emb|CAL28091.1| putative DNA primase DnaG [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 592

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 152/632 (24%), Positives = 273/632 (43%), Gaps = 42/632 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +++ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIEQSVINEIKDKTDILDIVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIR 119
             +CF C   G+   F   + G SF+E+V+ L     + + V       +       +I+
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIRGVSFVEAVKELGERVNIKVDVGESGAQNQIASDDLMMIK 115

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + E+  D++H+ L K    +    YL  RG     +   K+GYAPDS +   + L++KG+
Sbjct: 116 MHELMEDYYHYILMKTVEGEEALNYLKSRGFTEELLNERKIGYAPDSSHFCHDFLQKKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             E   EAGLL   + + + YDRFR+R++FP+ +++G+ + + GRT  K +  KYLNSPE
Sbjct: 176 DIELAYEAGLLSRNEENFSYYDRFRDRIMFPLNNAQGRTVGYSGRT-YKNQEPKYLNSPE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K K LYN   A   +++           + +IL+EG+MDV+   QAGV+ VV+S+
Sbjct: 235 TPIFQKRKLLYNIDRARRTIRQK----------NELILLEGFMDVIKADQAGVKQVVASM 284

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT +++     + KL+  + L FDGD  G  A  K        L  G  V  V +    D
Sbjct: 285 GTQISQEHTSFIRKLTSNVTLLFDGDFAGQEATLKTGQ---SLLQEGMNVFVVQMPSKMD 341

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I  YG+ AF+  +        +      ++   +      +    + + I+ ++  
Sbjct: 342 PDEYITKYGQEAFKNYLDHERKAFVLYKVNLHKDEIEHNDMAYEKYLKEITDDISLMQSG 401

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L+    Q + +  +  F   I E + +     +N   +     +         K K   
Sbjct: 402 ILQKKVLQDVSELFKVSFDSLINEVAMHSPQTPQNYSSQGTNFST---------KPKQYT 452

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           K    E  LL   + +  +  E  +EL    + N++ Q +++ L   + E  ++      
Sbjct: 453 KKEDAERKLLKHFMFNKDVFLEFNEELEAEDFTNSQFQSIFNILHDYYAENDHYDLSTAL 512

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               + G  E L  L+  + +                Q Y   +   +           +
Sbjct: 513 LYSNQEGDREALISLENLLLNRN--------PYEHEVQDYLNIITENRNDETPE----SL 560

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            +++ +    G+ E     +  +  ++    +
Sbjct: 561 NEKLREAARIGDLELQKYYLEKIILINKNRMK 592


>gi|107026825|ref|YP_624336.1| DNA primase [Burkholderia cenocepacia AU 1054]
 gi|105896199|gb|ABF79363.1| DNA primase [Burkholderia cenocepacia AU 1054]
          Length = 800

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 173/657 (26%), Positives = 276/657 (42%), Gaps = 66/657 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 177 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 231

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------------DPKIE 108
           +CF C   G  + FL    G +F E+VQ LA   G+ +P                D    
Sbjct: 232 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGGGGDYPAP 291

Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY- 167
             + + T L   +  A D++   L+         YL  RG+       F LGYAPD    
Sbjct: 292 VSKSVATALSDAMTAACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQN 349

Query: 168 --SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
             +     R +   E  ++      D    A  YDRFR R++FPIR+ +GQVI FGGR L
Sbjct: 350 LEAAFPDYRDESLVEAGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVL 409

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
             GE  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++
Sbjct: 410 GSGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVA 458

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           L Q G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A++  L H    
Sbjct: 459 LAQLGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAGDN 518

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             + F+ L    DPDS++R +G  AF + +  ++PL   L       ++ + P+ RA+  
Sbjct: 519 RTIRFLFLPTEHDPDSYVREFGAEAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKAL 578

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              K  +  +    LR        DRL   F++         R      +          
Sbjct: 579 FDAKPLLQALPANALRAQIMHMFADRLDIPFEEVAALSDVDTRIATPPRQ---------- 628

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                       ++ +  E   L TL+ HP I  +   E          + +L++ +   
Sbjct: 629 -----APARSERRRVTDSEKRALRTLVMHPRIASQLDDEQIATLRALPRIGELFAEVVDH 683

Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577
                       L + +        + E+ +++   D  VRD  L +   E      R+ 
Sbjct: 684 ARALGDGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQ 743

Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +      QA  L  R+     + + + +Q        E  +   L     ++  ++
Sbjct: 744 ERIAGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 798


>gi|161521350|ref|YP_001584777.1| DNA primase [Burkholderia multivorans ATCC 17616]
 gi|160345400|gb|ABX18485.1| DNA primase [Burkholderia multivorans ATCC 17616]
          Length = 636

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 174/654 (26%), Positives = 276/654 (42%), Gaps = 63/654 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 16  IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 70

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111
           +CF C   G  + FL    G +F E+VQ LA   G+ +P             D      +
Sbjct: 71  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSTRGGGGAGGDYPAPVSK 130

Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---S 168
            + T L  ++  A D++   L+         YL  RG+       F LGYAPD      +
Sbjct: 131 SVATALSDVMATACDYYRKQLRG--APAAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEA 188

Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
              + R     E  ++      D   +A  YDRFR R++FPIR+ +GQVI FGGR L  G
Sbjct: 189 AFPNYRDDALVESGLVIVSEKTDAQGAARRYDRFRERIMFPIRNVKGQVIGFGGRVLGSG 248

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
           E  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L Q
Sbjct: 249 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALAQ 297

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
            G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A++  L H      +
Sbjct: 298 LGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTI 357

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
            F+ L    DPDS++R +G  AF   +  ++PL   L       ++ + P+ RA+     
Sbjct: 358 RFLFLPPEHDPDSYVREFGADAFSDQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDA 417

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           K  +  +    LR      I DRL   F++         R                    
Sbjct: 418 KPLLQALPANALRAQIMHMIADRLDIPFEEVAALSEVDARIA---------------AAP 462

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                    ++ +  E   L TL+ HP I      E          + +L++ +      
Sbjct: 463 RQAPARSDRRRVTESEKRALRTLVMHPRIALALDDEQVATLRALPRIGELFAEVVDHARA 522

Query: 529 QKYFLPEEIHQRL-----CERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ- 579
                   +   +         + E+ +++   D  VRD  L +   EA     R+  + 
Sbjct: 523 LGDGAEFRLLSDVLRTSPNSATYEEIFREILDYDENVRDLLLQNPDDEAVAERQREQERI 582

Query: 580 -----QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                QA  L  R+     + + + +Q        E  +   L     ++  ++
Sbjct: 583 AGEELQAAVLKMRYDACCDRLDRLARQ--SAFTPEELAELKHLNEQRTDMKRRL 634


>gi|319897951|ref|YP_004136148.1| DNA primase [Haemophilus influenzae F3031]
 gi|317433457|emb|CBY81840.1| DNA primase [Haemophilus influenzae F3031]
          Length = 593

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 173/634 (27%), Positives = 290/634 (45%), Gaps = 55/634 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       FIE+++ LAA+AG+ +P         K +   + + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L+     F+ + L    + +   YL +RG+ +  IE F++G+ P++  ++       
Sbjct: 119 LYELMLEIATFYQNQL--PLNTQAQEYLQQRGLSAEIIERFQIGFVPNAMDTVLRKFGVN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+IE G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLNS
Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PETI +HKGK LY  + AL             +    +++VEGYMDV++L Q GV   V+
Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T  Q++L+++ + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD++IR YGK  FE+ I  +  L + ++   +    F+T + R +L       I+ I 
Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR      +  +L    Q  +              +        +  M         
Sbjct: 405 GEMLRLSLRNILAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     ++  L+ +P +++   +             ++   L +   +++     +
Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +      +   L+ L                +  D+   + Q      R   +   + 
Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +IE  IA+   +G   +   ++  L     Q  +
Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587


>gi|148242418|ref|YP_001227575.1| DNA primase [Synechococcus sp. RCC307]
 gi|147850728|emb|CAK28222.1| DNA primase [Synechococcus sp. RCC307]
          Length = 673

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 172/677 (25%), Positives = 300/677 (44%), Gaps = 67/677 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ +     I +++G++V   ++       ++   CPFHD+K+PS   + +K F
Sbjct: 5   RLHPRTIEAVKERADIVDVVGEHVMLKKKGR-----EFVGLCPFHDDKSPSMTVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           YYCFSC   G+ L FL  L   SF + V  LA    +P+  +D   +++ +     +  L
Sbjct: 60  YYCFSCGAGGNSLKFLMELKRQSFSDVVMELARRYSLPVETLDANQQERLRQQLSRRDQL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            R++ +A+ +F   L+         YL + RG+ +  IE F+LGYAP++   L  HL+Q 
Sbjct: 120 HRVLSLASGWFRSRLQAPEGAAALEYLRKQRGLSAGTIESFELGYAPEAWDGLLRHLQQV 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G     +  AGL++        YDRFR+RL+ PI   +G++I FGGR+L   E  KYLN
Sbjct: 180 EGIDPSLMEAAGLVVPRKGGNGFYDRFRHRLMVPIHDRQGRIIGFGGRSLDGSEP-KYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK+LY F  A + +++          +   ++VEGY DV++L  AGV++ V
Sbjct: 239 SPETEVFDKGKHLYGFDKAADPIRR----------ADCALVVEGYFDVIALHAAGVRHAV 288

Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVL 352
           ++LGTA++  Q+  L +   S RI+L FD D  G+RAA + I ++    L     +  + 
Sbjct: 289 AALGTAMSAQQVTQLCRCSESRRIILNFDADGAGVRAAQRTIGEVEQQALQGQLELRVLH 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+DPD F++ + +  +  L   +   +D   ++    +     D+       L   +
Sbjct: 349 LPAGKDPDEFLKQHSQADYLALQDNAPLWLDWQIEQVLSGKDLGRADQFQLAVQGLVELL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    LR +Y Q + +RL     +   +     R   K  R   +    ++   +SL 
Sbjct: 409 GKLPQSALRSHYLQRVAERLSGGQARMALQLEEDLRQQVKGQRWHGRSSRHEQPGDASLR 468

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVEQ 529
                      EA LL   ++ P++     QEL       +     +KLW+ L +   + 
Sbjct: 469 --------ERAEAQLLRLYLHVPSLRATIRQELRQRELEDFGLPHHRKLWAHLSALEEDN 520

Query: 530 ----------KYFLPEEIHQRLCER---------GFGELLKQLDRQVRDAGLWSATTEAN 570
                     +   P +    L                LL++L   +    L        
Sbjct: 521 LGVGLLENISRGSEPGDQLADLELPRLLSDLLLIEDSPLLQRLTALLEPGELQQLGLVNP 580

Query: 571 IVDVR---QGYQQALALYKRFRLLS----RQKEEIEKQIA----QVTAKGEAE-KTAILI 618
              +R      ++   L +   LL     ++ + +E+ IA        +G+AE +   L 
Sbjct: 581 SDQLRGTTASLERHRVLRRCRHLLEAWGSQRLQSLEQCIAMLLESKEDEGDAETRIEALF 640

Query: 619 SILHEVHIQIHQIESQE 635
             L+   ++  ++   E
Sbjct: 641 QRLNADALRFQELYYTE 657


>gi|168181624|ref|ZP_02616288.1| DNA primase [Clostridium botulinum Bf]
 gi|182675147|gb|EDT87108.1| DNA primase [Clostridium botulinum Bf]
          Length = 590

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 154/630 (24%), Positives = 282/630 (44%), Gaps = 41/630 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D ++ ++    I ++I   +       N     Y+  CPFH EKTPSF  +  K  Y
Sbjct: 2   ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ ++++      +F E+++ LA    + +     +       +  + ++  
Sbjct: 57  KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKENT--NNPKDKIYKINV 114

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F ++L    +K    Y   RG+    I+ F LGY+ DS   L  HL+ KG++E  
Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKSIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++ AGL+I   N  + YDRFRNR++FP+   RG+VI FGGR L      KYLNSPET++F
Sbjct: 173 MLSAGLIIKSKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG NLY    A+   +              +I+VEGYMD ++L Q G++N V+SLGTAL
Sbjct: 231 KKGINLYGLNYAVKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q RLL + + ++++ +D D  G  A  + +++       G  V  + +  G+DPD F
Sbjct: 280 TTNQARLLKRYADKVIISYDSDTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++ +GK ++ KL+ E+LPL++   K   ++ +     +  +        I  + D   + 
Sbjct: 337 VKAHGKESYLKLVKEALPLIEYKIKISKQDLNIGDKRQAIQYIDRYIKIIEDL-DPVEKD 395

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + + +      Q    + +   +  +KN       G    ++++   K  L      
Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------GKEVNMLEAFGQKLYLEPAYIR 448

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  + N+  I +     + +        + ++ ++     +      +   + LC
Sbjct: 449 AERFILQLMFNYNNIYEYIKNSINEQDIIEETHKAIYEYIKDTLEDSNIQNKKLHIETLC 508

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +             ++      T      D  + +     L  +   L + KE++ K+I
Sbjct: 509 NKNVET--------SKEWVKILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKEDLLKKI 560

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +  A+G+ + T  +   L +V   +  ++
Sbjct: 561 KEYEAQGKLDDTIKMSQELIKVKKTLGAMK 590


>gi|153939445|ref|YP_001392216.1| DNA primase [Clostridium botulinum F str. Langeland]
 gi|152935341|gb|ABS40839.1| DNA primase [Clostridium botulinum F str. Langeland]
 gi|295320213|gb|ADG00591.1| DNA primase [Clostridium botulinum F str. 230613]
          Length = 590

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 154/630 (24%), Positives = 284/630 (45%), Gaps = 41/630 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D ++ ++    I ++I   +       N     Y+  CPFH EKTPSF  +  K  Y
Sbjct: 2   ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ ++++      +F E+++ LA    + +     +       +  + ++  
Sbjct: 57  KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKENT--NNPKDKIYKINV 114

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F ++L    +K    Y   RG+    I+ F LGY+ DS   L  HL+ KG++E  
Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKPIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++ AGL+I   N  + YDRFRNR++FP+   RG+VI FGGR L      KYLNSPET++F
Sbjct: 173 MLSAGLIIKSKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG NLY    A+   +              +I+VEGYMD ++L Q G++N V+SLGTAL
Sbjct: 231 KKGINLYGLNYAVKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q RLL + + ++++ +D D  G  A  + +++       G  V  + +  G+DPD F
Sbjct: 280 TTNQARLLKRYADKVIISYDSDTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++ +GK ++ KL+ E+LPL++   K   ++ +     +  +        I ++ D   + 
Sbjct: 337 VKAHGKESYLKLVKEALPLIEYKIKISKQDLNIRDKRQAIQYIDRYIKIIENL-DPVEKD 395

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + + +      Q    + +   +  +KN       G    ++++   K  L      
Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------GKEVNMLEAFGQKLYLEPAYIR 448

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  + N+  I +     + +        + ++ ++     +      +   + LC
Sbjct: 449 SERFILQLMFNYNNIYEYIKNSINEQDIIEETHKAIYKYIKDTLEDSNIQNKKLHIETLC 508

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +             ++      T      D  + +     L  +   L + KE++ K+I
Sbjct: 509 NKNVET--------SKEWVNILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKEDLLKKI 560

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +  A+G+ ++T  +   L +V   +  ++
Sbjct: 561 KEYEAQGKLDETIKMSQELIKVKKTLGAMK 590


>gi|325688385|gb|EGD30404.1| DNA primase [Streptococcus sanguinis SK72]
          Length = 602

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 144/634 (22%), Positives = 266/634 (41%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEEKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           +CF C   GD   F+    G  F+++VQ +A  AG+PL V        ++      L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVFFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    ++ F++G AP+    L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
              +      +  +N    YD F+NR++FP+ +  GQV+AF GR        G   KY N
Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAVATDGHQAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L K   +I+L +DGD  G  A  KA+D +         V  V +  
Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F+    +   + L+ ++            +  +      + E    +   I   
Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K    +  Y   + + L     + + +     R  ++++R ++      +          
Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPIQQSQPAVMQFSPSN 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +   +I+HP ++  QY+   D  +D+ ELQ L+  L ++  E       
Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQALYEILLAN-GEVTPQDLS 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++   + +  +  L + L                   +V +   + +   +   +L +  
Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K+I + +  G+ +     +  L E   ++ 
Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602


>gi|87124241|ref|ZP_01080090.1| CHC2 zinc finger:Toprim domain [Synechococcus sp. RS9917]
 gi|86167813|gb|EAQ69071.1| CHC2 zinc finger:Toprim domain [Synechococcus sp. RS9917]
          Length = 696

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 173/670 (25%), Positives = 299/670 (44%), Gaps = 63/670 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I +++G++V   ++       ++   CPFHD+  PS   + +K F
Sbjct: 5   RLHPRTIDAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           YYCFSC   G+ + FL  L   SF + V  LA    +P+  V+   +++ +     +  L
Sbjct: 60  YYCFSCGAGGNAIKFLMELQRRSFSDVVLELARKYQLPVETVEGPQQERLRQQLSRRETL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            R + +A  +F   LK+A       YL ++RG+    +E F LGYAPD    L +HL+Q 
Sbjct: 120 QRALALAAGWFRSQLKSAGGTEALGYLKEKRGLREATLEQFGLGYAPDQWDGLLKHLQQV 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G + E +  AGL++        YDRFR+R+I PI   +G+VI FGGR+L   E  KYLN
Sbjct: 180 EGLAPELLEAAGLVVPRKGGNGFYDRFRHRVIVPIHDRQGRVIGFGGRSLDGSEP-KYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK+L+    A N ++K+ R           ++VEGY DV++L  AG+ N V
Sbjct: 239 SPETEVFEKGKHLFGLDRAANAIRKADRA----------VVVEGYFDVIALHAAGITNAV 288

Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352
           +SLGTAL+  Q+  L + +   RI+L FD D  G+RAA +AI  V    + G   +  + 
Sbjct: 289 ASLGTALSGQQITQLCRCTDSKRIILNFDADRAGVRAANRAIGEVEQLALQGQLELRVLH 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+DPD F++ +G   +  L+ ++   +D   ++  E R  +  D+  +    +   +
Sbjct: 349 LPSGKDPDEFLQDHGAGDYRALLDQAPLWLDWQIEQVLEGRDLDRADQFQQAVSGMVQLL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    LR +Y Q + +RL     +   +     R   K  R   +    ++  +S   
Sbjct: 409 GKLPQSALRTHYLQQVAERLSGGQSRVALQLEDDLRQQVKGERWHGRAARFEQPGES--- 465

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFL------- 522
                 +    EA LL+  ++ P+   E  +EL       +     + LW+ +       
Sbjct: 466 -----SQRERCEAQLLMLYLHCPSHRPEIRRELRQRELEDFGLQHHRLLWAAISELEETN 520

Query: 523 -----FSDFVEQKYFLPE----EIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEAN 570
                                 E+ + L ++       L+ +L   +    L   + E  
Sbjct: 521 LGAGRLEAISRGDDPGDALADLELARLLTDQLLLENSALVTRLTPLLEPGELQRLSLEQP 580

Query: 571 IVDVR--QGYQQALALYKRFRLLS-----RQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
           +  +R      +     KR R L      ++ E +E+ IA +  + + +    +      
Sbjct: 581 LQQLRGTAAMLERQKSLKRCRHLLEAWGGQRLETLERCIAALIQEEQQDPQPSVDME-QR 639

Query: 624 VHIQIHQIES 633
           + +    + +
Sbjct: 640 IQLMFETLNA 649


>gi|229552309|ref|ZP_04441034.1| DNA primase [Lactobacillus rhamnosus LMS2-1]
 gi|258539718|ref|YP_003174217.1| DNA primase [Lactobacillus rhamnosus Lc 705]
 gi|229314291|gb|EEN80264.1| DNA primase [Lactobacillus rhamnosus LMS2-1]
 gi|257151394|emb|CAR90366.1| DNA primase [Lactobacillus rhamnosus Lc 705]
          Length = 589

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 156/633 (24%), Positives = 266/633 (42%), Gaps = 47/633 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   +  +L  + I++ IGQYV   +   N      +  CPFH+E TPSF  N+SK  +
Sbjct: 2   IPEATVDQVLKAVNIADYIGQYVQLRKTGQNL-----FGLCPFHEEHTPSFSVNESKQIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CFSC   G+   F+      +F E+V+++A  AG+PL V   +    +        +++
Sbjct: 57  HCFSCGRGGNVFKFVMDYDNATFPEAVKKVADFAGIPLDVQVGQAAPVDPEVAKQQHILQ 116

Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
              D +HH L    + +    YL +RG+    IE FKLGYAP+ R  L   L  +    +
Sbjct: 117 DTADLYHHILVNTEKGEAALAYLHKRGLTDETIEEFKLGYAPEERNLLVAFLNNRHVEYQ 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
               +GL ++       +DRF +R++FP+  + G+V+ F GR L   +S  KYLNSPET 
Sbjct: 177 DQRASGLFVEDQAG-KLFDRFNDRVMFPLTDANGKVVGFSGRILQSDKSQAKYLNSPETK 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF+K   L+N   A     +              IL EGYMDV++  QAGV+  ++S+GT
Sbjct: 236 LFNKRDILFNLHRAKAEFGRDGGP----------ILFEGYMDVIAAYQAGVKTGIASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ ++  LS R+ +C+DGD+PG +A  +A+ ++  H     + + V+L  G DPD
Sbjct: 286 SLTTEQVDIISHLSKRLTVCYDGDEPGQKAIERAVTMLADHPR--LQTDVVVLPDGMDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +IR  G  AF+  +   L     + +        +    +          I  I D   
Sbjct: 344 EYIRARGAEAFQAQVKSVLTPTAFMLQFLARGVDMHNDQAKLTYLNAALRIIGKISDPVA 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y + + +  +                    A+      P + L            + 
Sbjct: 404 RAVYVKQLAETTEVPIAALNQSLPSPQTRRPAAAQPPIADQPVRPL-----------DRY 452

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +  +  LL  + +   ++Q      A   +     Q L++       EQ          R
Sbjct: 453 TAAQRQLLYYVWHDDLVMQRLKN--ATFVFPTPYFQTLFTGWLRFLHEQPDGELAGFLDR 510

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +     +   +  Q          +EA I ++ Q    A  +         + + I++
Sbjct: 511 V-DPELSGVAADVAMQSLPEA-----SEATIDELIQTITSASTVS--------RLQAIKQ 556

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            I +    G+ +K   L      +   + Q + 
Sbjct: 557 AITEAQRLGDKQKQGELTVQYVNLMKLLKQQQG 589


>gi|170758423|ref|YP_001788252.1| DNA primase [Clostridium botulinum A3 str. Loch Maree]
 gi|169405412|gb|ACA53823.1| DNA primase [Clostridium botulinum A3 str. Loch Maree]
          Length = 590

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 155/630 (24%), Positives = 284/630 (45%), Gaps = 41/630 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D ++ ++    I ++I   +       N     Y+  CPFH EKTPSF  +  K  Y
Sbjct: 2   ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ ++++      +F E+++ LA    + +     +       +  + ++  
Sbjct: 57  KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKENT--NNPKDKIYKINV 114

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F ++L    +K    Y   RG+    I+ F LGY+ DS   L  HL+ KG++E  
Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKSIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++ AGL+I G N  + YDRFRNR++FP+   RG+VI FGGR L      KYLNSPET++F
Sbjct: 173 MLSAGLIIKGKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG NLY    A+   +              +I+VEGYMD ++L Q G++N V+SLGTAL
Sbjct: 231 KKGINLYGLNYAVKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q RLL + + ++++ +D D  G  A  + +++       G  V  + +  G+DPD F
Sbjct: 280 TTNQARLLKRYADKVIISYDSDTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++ +GK ++ KL+ E+LPL++   K   ++ +     +  +        I ++ D   + 
Sbjct: 337 VKAHGKESYLKLVKEALPLIEYKIKISKQDLNIGDKRQAIQYIDRYIKIIENL-DPVEKD 395

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + + +      Q    + +   +  +KN       G    ++++   K  L      
Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------GKEVNMLEAFGQKLYLEPAYIR 448

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  + N+  I +     + +        + ++ ++     +      +   + LC
Sbjct: 449 AERFILQLMFNYNNIYEYIKNSINEQDIIEETHKVIYKYIKDTLEDSNIQNKKLHIETLC 508

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +             ++      T      D  + +     L  +   L + KE++ K+I
Sbjct: 509 NKNVET--------SKEWVNILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKEDLLKKI 560

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +  A+G+ + T  +   L +V   +  ++
Sbjct: 561 KEYEAQGKLDDTIKMSQELIKVKKTLGAMK 590


>gi|237796392|ref|YP_002863944.1| DNA primase [Clostridium botulinum Ba4 str. 657]
 gi|229262673|gb|ACQ53706.1| DNA primase [Clostridium botulinum Ba4 str. 657]
          Length = 590

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 154/630 (24%), Positives = 282/630 (44%), Gaps = 41/630 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D ++ ++    I ++I   +       N     Y+  CPFH EKTPSF  +  K  Y
Sbjct: 2   ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ ++++      +F E+++ LA    + +     +       +  + ++  
Sbjct: 57  KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKENT--NNPKDKIYKINV 114

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F ++L    +K    Y   RG+    I+ F LGY+ DS   L  HL+ KG++E  
Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKSIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++ AGL+I   N  + YDRFRNR++FP+   RG+VI FGGR L      KYLNSPET++F
Sbjct: 173 MLSAGLIIKSKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG NLY    A+   +              +I+VEGYMD ++L Q G++N V+SLGTAL
Sbjct: 231 KKGINLYGLNYAVKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q RLL + + ++++ +D D  G  A  + +++       G  V  + +  G+DPD F
Sbjct: 280 TTNQARLLKRYADKVIISYDSDTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++ +GK ++ KL+ E+LPL++   K   ++ +     +  +        I  + D   + 
Sbjct: 337 VKAHGKESYLKLVKEALPLIEYKIKISKQDLNIGDKRQAIQYIDRYIKIIEDL-DPVEKD 395

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + + +      Q    + +   +  +KN       G    ++++   K  L      
Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------GKEVNMLEAFGQKLYLEPAYIR 448

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  + N+  I +     + +        + ++ ++     +      +   + LC
Sbjct: 449 AERFILQLMFNYNNIYEYIKNSINEQDIIEETHKAIYKYIKDTLEDSNIQNKKLHIETLC 508

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +             ++      T      D  + +     L  +   L + KE++ K+I
Sbjct: 509 NKNVET--------SKEWVKILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKEDLLKKI 560

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +  A+G+ + T  +   L +V   +  ++
Sbjct: 561 KEYEAQGKLDDTIKMSQELIKVKKTLGAMK 590


>gi|170754369|ref|YP_001782572.1| DNA primase [Clostridium botulinum B1 str. Okra]
 gi|169119581|gb|ACA43417.1| DNA primase [Clostridium botulinum B1 str. Okra]
          Length = 590

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 154/630 (24%), Positives = 283/630 (44%), Gaps = 41/630 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D ++ ++    I ++I   +       N     Y+  CPFH EKTPSF  +  K  Y
Sbjct: 2   ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ ++++      +F E+++ LA    + +     +       +  + ++  
Sbjct: 57  KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKENT--NNPKDKIYKINV 114

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F ++L    +K    Y   RG+    I+ F LGY+ DS   L  HL+ KG++E  
Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKPIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++ AGL+I   N  + YDRFRNR++FP+   RG+VI FGGR L      KYLNSPET++F
Sbjct: 173 MLSAGLIIKSKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG NLY    A    +              +I+VEGYMD ++L Q G++N V+SLGTAL
Sbjct: 231 KKGINLYGLNYAAKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q RLL + + ++++ +D D  G  A  + +++       G  V  + +  G+DPD F
Sbjct: 280 TTNQARLLKRYADKVIISYDSDTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++ +GK ++ KL+ E+LPL++   K   ++ +     +  +        I ++ D   + 
Sbjct: 337 VKAHGKESYLKLVKEALPLIEYKIKISKQDLNIGDKRQAIQYIDRYIKIIENL-DPVEKD 395

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + + +      Q    + +   +  +KN       G    ++++   K  L      
Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------GKEVNMLEAFGQKLYLEPAYIR 448

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  + N+  I +     + +        + ++ ++     +      +   + LC
Sbjct: 449 SERFILQLMFNYNNIYEYIKNSINEQDIIEETHKAIYKYIKDTLEDSNIQNKKLHIETLC 508

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +             ++      T      D  + +     L  +   L + KE++ K+I
Sbjct: 509 NKNVET--------SKEWVNILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKEDLLKKI 560

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +  A+G+ ++T  +   L +V   +  ++
Sbjct: 561 KEYEAQGKLDETIKMSQELIKVKKTLGAMK 590


>gi|187929500|ref|YP_001899987.1| DNA primase [Ralstonia pickettii 12J]
 gi|309781723|ref|ZP_07676456.1| DNA primase [Ralstonia sp. 5_7_47FAA]
 gi|187726390|gb|ACD27555.1| DNA primase [Ralstonia pickettii 12J]
 gi|308919364|gb|EFP65028.1| DNA primase [Ralstonia sp. 5_7_47FAA]
          Length = 603

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 180/643 (27%), Positives = 291/643 (45%), Gaps = 59/643 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTD--L 117
           +CF C   G  + FL    G S++E+++ LA   G+ +P      P   + E+      L
Sbjct: 57  HCFGCGAHGSAIGFLMEFSGQSYVEAIKDLAQSVGMVVPEERGGLPPAARAEQQAKTVAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR--Q 175
             ++  A D +   L++        YL  RG+       F LGYAPD   SL       +
Sbjct: 117 GDVMARACDHYRKQLRS--APNAIQYLKGRGLTGEIAAHFGLGYAPDDWQSLEAVFGPYR 174

Query: 176 KGFSEEKIIEAGLLIDGDNS-----ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
           +  +   +IEAGL+I+ + +        YDRFR+R++FPIR+++G VI FGGR L +GE 
Sbjct: 175 EDATAAPLIEAGLVIESEKTGADGSHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF KG  LY  F A N ++             ++++VEGYMDV++L Q G
Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFDYVLVVEGYMDVVALAQLG 283

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
             N V++LGTA T   ++ L +    ++  FDGD  G RAA +A++  L H      + F
Sbjct: 284 FANAVATLGTACTPTHVQKLLRQVDTVIFSFDGDSAGRRAARRALEACLPHATDNKTIKF 343

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           + L    DPDSF+R  G  AF + +  ++PL   L +  TE+     P+ RA  +   K 
Sbjct: 344 LFLPAEHDPDSFVREEGTEAFAREVHNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKP 403

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +    LR    + + D         I    G      +  R   ++    R   ++
Sbjct: 404 LLSAMPAGGLRLQIVRGLADMTG-TTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTA 462

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFV 527
           L            E  +L  L+ +PA+      + A  +    +L   + L + L     
Sbjct: 463 L------------EQKVLRLLMRYPALAARLDAD-ARAQLTAPQLPQGEVLAALLGECDA 509

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                      +RL +  + E    L   V    +     E  + +     Q+ LA    
Sbjct: 510 VGPEVHFGAFVERLGQTPYAEAFAGLRTAVLQDDIEL---EPAMSEFDTAVQKMLA---- 562

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629
              L R+ E +++++ +    G+ +K    +  L  E+  +  
Sbjct: 563 -EPLKRELEMLQRKM-EAGHAGDDDK--ERMRWLVGEISRRRQ 601


>gi|183983630|ref|YP_001851921.1| DNA primase DnaG [Mycobacterium marinum M]
 gi|183176956|gb|ACC42066.1| DNA primase DnaG [Mycobacterium marinum M]
          Length = 656

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 142/654 (21%), Positives = 253/654 (38%), Gaps = 46/654 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I +++G YV   R             CPFH+EK+PSFH   + G 
Sbjct: 20  RISDRDIAAIREGARIEDVVGDYVQLRRAGA----DSLKGLCPFHNEKSPSFHVRPNHGH 75

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD  +F+  +   SF+E+V+ LA   G  +         +     ++ LI 
Sbjct: 76  FHCFGCGEGGDVYAFVQKIEHVSFVEAVELLADRIGHTISYTGAATSVQRDRGSRSRLIA 135

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A  F+  +L++        YL ER  D+ A   F  G+AP    SL +HL++KGF 
Sbjct: 136 ANAAAAAFYAEALESPEAALARKYLTERSFDAAAAHHFGCGFAPSGWDSLTKHLQRKGFE 195

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            +++  AGL           DRF  RL++PIRSS G+VI FG R L   + +  KY+N+P
Sbjct: 196 FKELEAAGLSRQ--GRRGPIDRFHRRLLWPIRSSAGEVIGFGARRLFDDDPMDAKYVNTP 253

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K   L+    A   + +              ++VEGY DV+++  AGV   V+S
Sbjct: 254 ETLLYKKSSVLFGIDLAKRDIAR----------GHQAVVVEGYTDVMAMHLAGVTTAVAS 303

Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA  +  L +L +L          ++  FDGD+ G  AA KA D          +   
Sbjct: 304 CGTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDEAGRAAALKAFDGEQNLAG---QSFV 360

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G TA   L+    PL +   +         + + R         
Sbjct: 361 AVAPDGMDPCDLRLASGDTALRDLVARRTPLFEFAIRTALAESDLESAEGRVGALRRCVP 420

Query: 411 CINHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
            +  IKD  LR  Y++ +   +      Q+  +   E     R  +  A  +  +  +  
Sbjct: 421 MVGQIKDPTLRDEYARQLAGWVGWDDVAQVIDRVRGEAKNATRPNRGGAATKTPRRVAHE 480

Query: 466 LM-----QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                  + +  +          +   L + + +PA+    +  L    + +     + +
Sbjct: 481 STDTGSAEPAAARPDPRDPTLWPQREALKSALQYPALAGPVFDTLTVESFTHPGYAAVRA 540

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            + +           +    + ++    L   L  ++    +     +         Y  
Sbjct: 541 AIDAAGGTATGVTGAQWMDMVRQQTTSPLTSGLISELTVETIQVDEEKLP------RYIG 594

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +    +   + RQ  E++ ++ +++   + ++   L   L  +      +  Q
Sbjct: 595 GVLARLQEVWMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 648


>gi|116074626|ref|ZP_01471887.1| DNA primase [Synechococcus sp. RS9916]
 gi|116067848|gb|EAU73601.1| DNA primase [Synechococcus sp. RS9916]
          Length = 690

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 177/668 (26%), Positives = 300/668 (44%), Gaps = 65/668 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I +++G++V   ++       ++   CPFHD+  PS   + +K F
Sbjct: 5   RLHPRTIDAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           YYCFSC   G+ + FL  L   SF + V  LA    +P+  VD   +++ +     +  L
Sbjct: 60  YYCFSCGAGGNSIKFLMELQRQSFSDVVLELARKYQLPVETVDGPQQERLRQQLSRREKL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            R + +A+ +F   L+ A  +    YL E RG+    ++ F+LGYAPD    L +HL+Q 
Sbjct: 120 HRALALASGWFRTQLRTAAGQGALQYLRESRGLSEATLDAFELGYAPDQWDGLLKHLQQV 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G S E +  AGL++        YDRFR+R++ PIR  +G+VI FGGR+L  G   KYLN
Sbjct: 180 EGLSPEMLEAAGLVVPRKGGNGFYDRFRHRVMVPIRDRQGRVIGFGGRSL-DGAEPKYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK+L+    A N ++K  R           ++VEGY DV++L  AG+ N V
Sbjct: 239 SPETEVFEKGKHLFGLDRAANAIRKDDRA----------VVVEGYFDVIALHAAGITNAV 288

Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352
           +SLGTAL+  Q+  L + S   RIVL FD D  G+RAA +AI  V    + G   +  + 
Sbjct: 289 ASLGTALSSQQITQLCRCSDGKRIVLNFDADGAGIRAANRAIGEVEQLALQGQLELRVLH 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+DPD F++ +G   +  L+ ++   +D   ++  E R     D+  +    L   +
Sbjct: 349 LPSGKDPDEFLKDHGAGDYRALLDQAPLWLDWQIEQVLEGRDLAKADQFQQGVSALVALL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    +R +Y Q + +RL     +   +     R   K  R   +    ++  +SS  
Sbjct: 409 GKLPPSAIRTHYLQQVAERLSGGQGRLALQLEDDLRQQVKGQRWHGRSARFEQPGESSQR 468

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFV-- 527
           +          EA +L   ++ P+      +EL       +     + LW+ L       
Sbjct: 469 ERS--------EAEILRLYLHCPSHRSAIRRELRQRELEDFALQHHRLLWASLTDLEETN 520

Query: 528 --------------EQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEAN 570
                                 ++ + L ++       L+ +L   +    L        
Sbjct: 521 IGAGRLEAVSRGQDSGDELADLDLPRLLTDQLLLENSALVSRLTPLLEPGELQLLALANP 580

Query: 571 IVDVR--QGYQQALALYKRFRLLS-----RQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
           +  +R      +     KR R L      ++ + +E+ IA + A+ E ++   L +   +
Sbjct: 581 MQQLRGTAAMLERQKSLKRCRHLLEAWGGQRLQTLERCIASLIAQ-EQDQPQTLAN--ID 637

Query: 624 VHIQIHQI 631
           +  +I  +
Sbjct: 638 MEQRIQAL 645


>gi|322807254|emb|CBZ04828.1| DNA primase [Clostridium botulinum H04402 065]
          Length = 590

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 154/630 (24%), Positives = 283/630 (44%), Gaps = 41/630 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D ++ ++    I ++I   +       N     Y+  CPFH EKTPSF  +  K  Y
Sbjct: 2   ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ ++++      +F E+++ LA    + +     +       +  + ++  
Sbjct: 57  KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKENT--NNPKDKIYKINV 114

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F ++L    +K    Y   RG+    I+ F LGY+ DS   L  HL+ KG++E  
Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKSIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++ AGL+I   N  + YDRFRNR++FP+   RG+VI FGGR L      KYLNSPET++F
Sbjct: 173 MLSAGLIIKSKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG NLY    A+   +              +I+VEGYMD ++L Q G++N V+SLGTAL
Sbjct: 231 KKGINLYGLNYAVKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q RLL + + ++++ +D D  G  A  + +++       G  V  + +  G+DPD F
Sbjct: 280 TTNQARLLKRYADKVIISYDSDTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++ +GK ++ KL+ E+LPL++   K   ++ +     +  +        I ++ D   + 
Sbjct: 337 VKAHGKESYLKLVKEALPLIEYKIKISKQDLNIGNKRQVIQYIDRYIKIIENL-DPVEKD 395

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + + +      Q    + +   +  +KN       G    ++++   K  L      
Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------GKEVNMLEAFGQKLYLEPAYIR 448

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  + N+  I +     + +        + ++ ++     +      +   + LC
Sbjct: 449 AERFILQLMFNYNNIYEYIKNSINEQDIIEEIHKAIYKYIKDTLEDSNIQNKKLHIETLC 508

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +             ++      T      D  + +     L  +   L + KE + K+I
Sbjct: 509 NKNVET--------SKEWVNILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKENLLKKI 560

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +  A+G+ ++T  +   L +V   +  ++
Sbjct: 561 KEYEAQGKLDETIKMSQELIKVKKTLGAMK 590


>gi|28378606|ref|NP_785498.1| DNA primase DnaG [Lactobacillus plantarum WCFS1]
 gi|28271442|emb|CAD64347.1| DNA primase DnaG [Lactobacillus plantarum WCFS1]
          Length = 626

 Score =  349 bits (895), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 140/651 (21%), Positives = 262/651 (40%), Gaps = 50/651 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +   + I++ IGQYV   +   N      +  CPFH+E+TPSF  N+ K  
Sbjct: 4   RIPEEKVEQVRSAVNIADFIGQYVQLKKAGKNL-----FGLCPFHEERTPSFSVNEQKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           ++CFSC   G+  SF+  L   SF E+V ++A    + LP            K++ Q DL
Sbjct: 59  FHCFSCGRGGNVFSFIMDLENLSFPEAVVKVADFGHIDLPASYTAQSQPAAPKDQQQADL 118

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           ++L   +   + H L      +    YL ERG+D   I+ F +GYAP +   L +  ++ 
Sbjct: 119 LKLYADSAKMYQHILVNTELGEPALKYLHERGLDDETIKTFGIGYAPAN-QLLLDFFKEH 177

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235
               + + ++GL I+        DRF +R++FPI+ + G+VIAF GR L K     KYLN
Sbjct: 178 QTDYQLLRQSGLFIENQAGD-LRDRFVDRVLFPIKDASGRVIAFSGRILKKSPNEPKYLN 236

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LF+K   L+NF  A   ++              ++L EG+MDV++  ++G+QN V
Sbjct: 237 SPETKLFNKRSVLFNFDLARGPIR----------QQKSVVLFEGFMDVIAAYRSGIQNGV 286

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GT+LT+ Q+ +L +++  + +C+D D PG +A  +A+ L+  +      V  + +  
Sbjct: 287 ASMGTSLTDEQIYMLERVTDTLYVCYDSDMPGQKATDRALKLLGGNSRLNLGV--IQMPD 344

Query: 356 GEDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
           G DPD ++R  G+  F +              +    + +     ++      +   +  
Sbjct: 345 GMDPDEYLRAQGQEKFVQVFEDGKQTPTAFEMQYLKHDLNLQNTPDQLTYLQAVLQQLAQ 404

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS----------- 463
           +     +  Y   +             +                   P            
Sbjct: 405 LSSSVEQDLYLNQLVAEFDLDKDDLKQQLRSLVGQQAVRRGGGHSDEPQVAPPPAPAPLG 464

Query: 464 -QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
                           +    E  LL  L+N   +       +A   + ++  Q++  + 
Sbjct: 465 PPPATVDGSTNSGPLSRVEKAERLLLYRLLNDHDVWLRVM-AIAGFHFVHDSYQQILVYA 523

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            + F     F        + +     ++  L+             +      ++     +
Sbjct: 524 EAYFKTHNQFDLGNFTDFMTDSDLQPVVTSLE-----------FMDVANESSKEEIADLV 572

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +    + L  Q    + ++      G  +    L   L +++ Q  Q++ 
Sbjct: 573 NVIMNQQPLVEQINSKKAELTAAKQIGNRDLVQQLTLALIDLYRQQQQVQR 623


>gi|256843284|ref|ZP_05548772.1| DNA primase [Lactobacillus crispatus 125-2-CHN]
 gi|256614704|gb|EEU19905.1| DNA primase [Lactobacillus crispatus 125-2-CHN]
          Length = 606

 Score =  349 bits (895), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 156/639 (24%), Positives = 283/639 (44%), Gaps = 49/639 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P DFI ++  ++ I ++I QYV  +++       DY   CPFH EKTPSF  N  K F
Sbjct: 4   RIPEDFISEVRSNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNADKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESV+R+A  A + +P  +            L+++ 
Sbjct: 59  FKCFGCGKGGNVFKFLMYKDDLTFPESVERVAEFAHIAMP--NGYGHNSGTKLNPLMQMH 116

Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A DF+H   L     +R   Y  +R +D   ++ FK+GYAP +   L  +LR KG+ +
Sbjct: 117 QDAVDFYHRVLLTTKAGERGMQYAQKRELDQEILDHFKIGYAPKADNVLITYLRSKGYQD 176

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
           + + ++GL +   +    YDRFR+RL+FP+ +  G+ I F GR +S  ++  KY+NSPET
Sbjct: 177 DDLAQSGLFVQARDG-QLYDRFRDRLMFPLDNENGRTIGFSGRRISDDKTEAKYMNSPET 235

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K K L++F  A    +              ++L EGYMDV++  +AGV++ ++S+G
Sbjct: 236 GIFTKSKVLFHFAEAKKAAR----------GEGHLVLYEGYMDVIAAYKAGVKSGIASMG 285

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ LL +++P I++ +DGDDPG+ A  +A  +          +  V+L    DP
Sbjct: 286 TSLTDDQIYLLRRITPNIIINYDGDDPGVHAEERAARMFNKDGNFNLGI--VVLPEKLDP 343

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG   + + +  +L   D   KR  +  + +   E+          I  +++  
Sbjct: 344 DEYVKKYGAEKYLEEVKGALTPTDFFLKRLEQKYNLDNDREKIAYLGEAVKEIAQVRNPV 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYW----------KKNARHRDQKGPSQRLMQS 469
            +  Y++ +               +   R            ++N+       P       
Sbjct: 404 EQDMYTEKLAKSSGVSIASLKANLAKERRRNNRARNHVRNSQRNSPDYPIDVPLPGDEDV 463

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              +  + K PS  +  LL   I+     +   +      + N + + L           
Sbjct: 464 PTEQSVVKKNPS--QTRLLYLFIHSTDAQKYMLE--GQFHFPNQDFETLAQDWLKYAETH 519

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    +     + E+        L   + DA +     ++ I +V      AL L  + R
Sbjct: 520 ENPQIDGFLDFIPEQ--------LQGIIVDAEMAQMPKDSTIQEV-----DALVLALKRR 566

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +  +  E++ Q+     K +A+    +   +  +   +
Sbjct: 567 NIYSRLNELQAQLQDAKRKNDAQGIIAITQEIIGLKRIL 605


>gi|119899515|ref|YP_934728.1| DNA primase [Azoarcus sp. BH72]
 gi|119671928|emb|CAL95842.1| DNA primase [Azoarcus sp. BH72]
          Length = 606

 Score =  349 bits (895), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 179/635 (28%), Positives = 293/635 (46%), Gaps = 45/635 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ F++DLL  I I ++I +Y+   +   N     Y+ACCPFH E + SF  + +K FY
Sbjct: 2   IPQAFVQDLLSRIDIVDVIERYLPLKKGGAN-----YFACCPFHGENSASFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRLI 121
           +CF C   G  + FL    G  F+++V+ LA  AG+ +P    ++   +      L   +
Sbjct: 57  HCFGCGAHGSAIGFLMEYSGLGFVDAVKELANQAGMQVPDDGQRVNAAQSGEHDRLFDAV 116

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             A  F+  +LK         YL  RG+       F +GYAPD   +L++      +  +
Sbjct: 117 AAAARFYRDALKA--APIAIDYLKRRGLSGEVAARFGIGYAPDDWQALQKVF--PDYQAK 172

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            + +AGL+ID D     YDRFR R++FPI   RG++IAFGGR L +GE  KYLNSPET L
Sbjct: 173 TLADAGLVIDNDQGRR-YDRFRGRVMFPIHDRRGRIIAFGGRVLDQGEP-KYLNSPETPL 230

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KG+ LY  F A   ++           + F ++VEGYMDV++L Q G++N V++LGTA
Sbjct: 231 FEKGRELYGLFLAQKAIR----------DAGFALVVEGYMDVVALAQFGIENAVATLGTA 280

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T + ++ L + + R+V CFDGD+ G RAA +A++  L  L     + F+ L    DPDS
Sbjct: 281 TTTHHIQALLRHTDRVVFCFDGDNAGRRAARRALENALDALRDDVTLAFLFLPTEHDPDS 340

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           F+R  G  AF +   E+ PL   L  +  E+    T + RA L    +  +  I    L+
Sbjct: 341 FVRSEGAAAFRQAAAEATPLARTLLDQLQEDLDLATAEGRARLVHDARPLVTRIPAPLLK 400

Query: 422 YYYSQAIRD--RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
               +A+ +  +L Q   ++    +G             + GP +    S   +G   + 
Sbjct: 401 LQLIKAVAEASQLTQAEVEHAFGLAGPQAGTSPPRADSPRPGPRRPSGFSRPARGPGRRA 460

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP---EE 536
           PS   A LL  +++HPA+      +L        E + L   +       +         
Sbjct: 461 PSTT-ATLLRLVVHHPALAARLPADLLPAE--TPESRALV-AIVDLVSLGEPLPAGGVGG 516

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + +R  +    E L ++  ++ D     +  E    D  +              ++R+ +
Sbjct: 517 LIERFRDTPHAETLSRVAAELIDTEFDDSAIETLFEDALRKLG--------ADAVTREID 568

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            +      +  + E   +      L E+ ++   +
Sbjct: 569 AL------LALEREQGLSTAERHRLSELILERRNL 597


>gi|224370026|ref|YP_002604190.1| DnaG9 [Desulfobacterium autotrophicum HRM2]
 gi|223692743|gb|ACN16026.1| DnaG9 [Desulfobacterium autotrophicum HRM2]
          Length = 602

 Score =  349 bits (895), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 152/642 (23%), Positives = 267/642 (41%), Gaps = 47/642 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P++ I +++    I  +I + V   +   N     Y+  CPFH EK+PSF  +  K 
Sbjct: 1   MLIPQEKISEIINASDIVEVISEVVLLKKSGRN-----YFGLCPFHSEKSPSFSVSPEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEKIQTDLI 118
            ++CF C   G+  SFL    G SF E+V+  AA   +   +  VDP+ +++  ++ +L+
Sbjct: 56  IFHCFGCSAGGNVFSFLMRHHGISFPEAVKMAAARYNIVVEMGSVDPERKRRIALKEELL 115

Query: 119 RLIEVATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           RL       +   L ++   +    YL +RGI    I+ F LGYA D    +    R   
Sbjct: 116 RLNTAVMKHYKVLLTDSPGAQGARNYLRDRGITPETIDTFSLGYAEDRWDDMVRFFRHLK 175

Query: 178 FSEEKIIEAGLL----IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
                  ++GL+     D       YDRFRNR++FPI  +  QV  FGGR +      KY
Sbjct: 176 LGRNLAEQSGLVLERASDRGGKKGYYDRFRNRIVFPIVDTNMQVAGFGGRVM-DDSMPKY 234

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET ++ KG+ LY    A  Y +              + +VEGY D LSL Q G++N
Sbjct: 235 LNSPETPVYSKGQILYGLHLAKQYCR----------QVDCVYIVEGYFDFLSLFQNGIKN 284

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGTALT   +R L   + R VL FD D+ G+ AA + +         G  V  ++L
Sbjct: 285 TVASLGTALTVDHVRRLKGFATRAVLVFDSDNAGINAAKRCV---STFAAEGVDVRILVL 341

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            +G DPDSF+   G  AF++   +++ ++D L     +    ++ + R  +   +K  + 
Sbjct: 342 PKGHDPDSFVNSEGADAFKRAADQAMSVMDFLTDTAMKK-HGSSVEGRIAVLEEMKLPLA 400

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            I+D   R  Y + + ++L       +                            S    
Sbjct: 401 RIEDSAARSLYVRGLAEQLGIDESAVLERVRNVVSTQGGGQPVSLPG----NGDLSDPDD 456

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
              + +   RE  +L  +I HP + +E   +     +     +++   +      +    
Sbjct: 457 SGETLESYRREEQMLAMIIQHPEVGREALNQGVLDHFYCERFRRIGRIVAEQDGNEGMMA 516

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            + +     ++   +L+  L        +        +       ++ + +  +      
Sbjct: 517 ADLMAAMADDQD-RQLVASLAM------MDGGLEGDVLEKAVFLMKRIVKVRVKTE---- 565

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
               +  QI +    G+   + +   +L +   +I ++   E
Sbjct: 566 --NTLANQIRRAEQGGD---SRLPFELLKKRQKEIRKLHGYE 602


>gi|78187443|ref|YP_375486.1| DNA primase [Chlorobium luteolum DSM 273]
 gi|78167345|gb|ABB24443.1| DNA primase [Chlorobium luteolum DSM 273]
          Length = 633

 Score =  349 bits (895), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 168/654 (25%), Positives = 276/654 (42%), Gaps = 42/654 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I ++     I ++I  Y+   +         + A  PF  EKTPSF  +  K  Y
Sbjct: 2   IPHETIDEVRQAADIVDIISDYLTLRQAGR-----SFKALSPFTQEKTPSFVVSPEKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CFS    G+  SF+  +   SF E+V+ +A  AG+ +     K   ++  +      + 
Sbjct: 57  KCFSTGKGGNVFSFVMEMEKVSFPEAVELVAKRAGIDISRFTSKNAGEDAKEDTRTNTLR 116

Query: 123 VATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A   FH +L+         Y   ERG+ +  I+ F LGYAP     L    +  G   +
Sbjct: 117 WAARHFHSTLERDHGSPGYAYLAAERGLSATTIKSFGLGYAPPGWDHLLHAAKNAGIERK 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETI 240
            +   GL+ +     + YD FRNR+IFPI S  GQV+ FGGRTL K  ++ KYLNS E+ 
Sbjct: 177 HLESLGLITENRQKKSWYDTFRNRVIFPIFSIGGQVVGFGGRTLEKSPDTPKYLNSQESS 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K K LY    A N ++          SS+  ILVEGYMDVL+L QAG+ + V+S GT
Sbjct: 237 IFEKSKLLYGLNTAKNEIR----------SSAQAILVEGYMDVLALHQAGITSAVASCGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT YQ +++ + +  ++  +D D  G ++    ID++L           ++L  G+DPD
Sbjct: 287 SLTRYQAKIIGRYAKSVLFVYDADPAGKKSMMAGIDILLSE---NITPIILMLPPGDDPD 343

Query: 361 SFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           SF++  G+  F  L   ESL  +D   +   E  +F TP+ +A+    +   I    D  
Sbjct: 344 SFVKREGREKFLALSRKESLSFLDFQIRFHREAGAFETPELKADAIGSMVRTIGLAADPV 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y Q + +++    Q               N   R    P     ++  VK  ++  
Sbjct: 404 RRELYLQELSEKIGISLQALNEVLPAG------NPGKRQSAPPPPPPGRAKQVKPIVAGP 457

Query: 480 PSLREAALLLTLIN---HPAILQEQYQELAD-IRYDNNELQKLWSFLFSDFVE-----QK 530
            S+ E   +  L+    +  ++ E        +   N   Q ++  +   + E       
Sbjct: 458 ISVLEKTFVKALLESTAYGNVVLEFAASHEAMLMLRNPAAQHIFLHMIRRYHEISADPDA 517

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                            +L   L      +  W   T+ +    R+     L  +K   +
Sbjct: 518 RIDVATEIGLFGRPDAEDLATGLLMDQPVSNKWLEKTDLHGDSARRCLGMFLDAFKNL-I 576

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH--QIESQE---AMIE 639
           L    +E ++ +  +  + E EK   L      +  +I    +E  E   A++E
Sbjct: 577 LEPLLDEKDRLMEAIRTEAETEKEIALSREKITLDKKIRTTALELSEMIAAILE 630


>gi|189352483|ref|YP_001948110.1| DNA primase [Burkholderia multivorans ATCC 17616]
 gi|189336505|dbj|BAG45574.1| DNA primase [Burkholderia multivorans ATCC 17616]
          Length = 622

 Score =  349 bits (895), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 174/654 (26%), Positives = 276/654 (42%), Gaps = 63/654 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111
           +CF C   G  + FL    G +F E+VQ LA   G+ +P             D      +
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSTRGGGGAGGDYPAPVSK 116

Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---S 168
            + T L  ++  A D++   L+         YL  RG+       F LGYAPD      +
Sbjct: 117 SVATALSDVMATACDYYRKQLRG--APAAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEA 174

Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
              + R     E  ++      D   +A  YDRFR R++FPIR+ +GQVI FGGR L  G
Sbjct: 175 AFPNYRDDALVESGLVIVSEKTDAQGAARRYDRFRERIMFPIRNVKGQVIGFGGRVLGSG 234

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
           E  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L Q
Sbjct: 235 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALAQ 283

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
            G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A++  L H      +
Sbjct: 284 LGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTI 343

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
            F+ L    DPDS++R +G  AF   +  ++PL   L       ++ + P+ RA+     
Sbjct: 344 RFLFLPPEHDPDSYVREFGADAFSDQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDA 403

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           K  +  +    LR      I DRL   F++         R                    
Sbjct: 404 KPLLQALPANALRAQIMHMIADRLDIPFEEVAALSEVDARIA---------------AAP 448

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                    ++ +  E   L TL+ HP I      E          + +L++ +      
Sbjct: 449 RQAPARSDRRRVTESEKRALRTLVMHPRIALALDDEQVATLRALPRIGELFAEVVDHARA 508

Query: 529 QKYFLPEEIHQRL-----CERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ- 579
                   +   +         + E+ +++   D  VRD  L +   EA     R+  + 
Sbjct: 509 LGDGAEFRLLSDVLRTSPNSATYEEIFREILDYDENVRDLLLQNPDDEAVAERQREQERI 568

Query: 580 -----QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                QA  L  R+     + + + +Q        E  +   L     ++  ++
Sbjct: 569 AGEELQAAVLKMRYDACCDRLDRLARQ--SAFTPEELAELKHLNEQRTDMKRRL 620


>gi|227878690|ref|ZP_03996604.1| DNA primase [Lactobacillus crispatus JV-V01]
 gi|262046493|ref|ZP_06019455.1| DNA primase [Lactobacillus crispatus MV-3A-US]
 gi|293380133|ref|ZP_06626220.1| DNA primase [Lactobacillus crispatus 214-1]
 gi|312978175|ref|ZP_07789919.1| DNA primase [Lactobacillus crispatus CTV-05]
 gi|227861705|gb|EEJ69310.1| DNA primase [Lactobacillus crispatus JV-V01]
 gi|260573364|gb|EEX29922.1| DNA primase [Lactobacillus crispatus MV-3A-US]
 gi|290923303|gb|EFE00219.1| DNA primase [Lactobacillus crispatus 214-1]
 gi|310894893|gb|EFQ43963.1| DNA primase [Lactobacillus crispatus CTV-05]
          Length = 606

 Score =  349 bits (895), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 156/639 (24%), Positives = 283/639 (44%), Gaps = 49/639 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P DFI ++  ++ I ++I QYV  +++       DY   CPFH EKTPSF  N  K F
Sbjct: 4   RIPEDFISEVRSNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNADKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESV+R+A  A + +P  +            L+++ 
Sbjct: 59  FKCFGCGKGGNVFKFLMYKDDLTFPESVERVAEFAHIAMP--NGYGHNSGTKLNPLMQMH 116

Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A DF+H   L     +R   Y  +R +D   ++ FK+GYAP +   L  +LR KG+ +
Sbjct: 117 QDAVDFYHRVLLTTKAGERGMQYAQKRELDQEILDHFKIGYAPKADNVLITYLRSKGYQD 176

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
           + + ++GL +   +    YDRFR+RL+FP+ +  G+ I F GR +S  ++  KY+NSPET
Sbjct: 177 DDLAQSGLFVQARDG-QLYDRFRDRLMFPLDNENGRTIGFSGRRISDDKTEAKYMNSPET 235

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K K L++F  A    +              ++L EGYMDV++  +AGV++ ++S+G
Sbjct: 236 GIFTKSKVLFHFAEAKKAAR----------GEGHLVLYEGYMDVIAAYKAGVKSGIASMG 285

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ LL +++P I++ +DGDDPG+ A  +A  +          +  V+L    DP
Sbjct: 286 TSLTDDQIYLLRRITPNIIINYDGDDPGVHAEERAARMFNKDGNFNLGI--VVLPEKLDP 343

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG   + + +  +L   D   KR  +  + +   E+          I  +++  
Sbjct: 344 DEYVKKYGAEKYLEEVKGALTPTDFFLKRLEQKYNLDNDREKIAYLGEAVKEIAQVRNPV 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYW----------KKNARHRDQKGPSQRLMQS 469
            +  Y++ +               +   R            ++N+       P       
Sbjct: 404 EQDMYTEKLAKSSGVSIASLKANLAKERRRNNRARNHVRNSQRNSPDYPIDVPLPGDEDV 463

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              +  + K PS  +  LL   I+     +   +      + N + + L           
Sbjct: 464 PTEQSVVEKNPS--QTRLLYLFIHSTDAQKYMLE--GQFHFPNQDFETLAQDWLKYAETH 519

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    +     + E+        L   + DA +     ++ I +V      AL L  + R
Sbjct: 520 ENPQIDGFLDFIPEQ--------LQGIIVDAEMAQMPKDSTIQEV-----DALVLALKRR 566

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +  +  E++ Q+     K +A+    +   +  +   +
Sbjct: 567 NIYSRLNELQAQLQDAKRKNDAQGIIAITQEIIGLKRIL 605


>gi|227890105|ref|ZP_04007910.1| DNA primase [Lactobacillus johnsonii ATCC 33200]
 gi|227849549|gb|EEJ59635.1| DNA primase [Lactobacillus johnsonii ATCC 33200]
          Length = 603

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 152/634 (23%), Positives = 277/634 (43%), Gaps = 44/634 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI ++   + I ++I QYV  +++       DY   CPFH EKTPSF  N+ K F
Sbjct: 4   RIPEQFIDEVRNSVDIVDVISQYVSLEKKGK-----DYLGLCPFHQEKTPSFTVNEGKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESV+++A +A + +P    +  K       +    
Sbjct: 59  FKCFGCGKGGNVFKFLMYQDHLTFPESVRKVAELAHLHMPEGYGEAVKPLSPLKKMY--- 115

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             AT+F+ H L   +  +R   Y  +R + S  +E FK+GYAPD+   L  +LRQ+G+++
Sbjct: 116 RQATEFYQHILLTTKVGERALEYAQKRELTSDLLEHFKVGYAPDNDTILLTYLRQEGYTD 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
            ++ E+GL ++  +    +DRFR+RL+FP+    G  + F GR +SK +++ KY+NSPET
Sbjct: 176 AELRESGLFVESQDG-QLFDRFRDRLMFPLGDESGYTVGFSGRRISKDKTIAKYMNSPET 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K K L++F  A    +          S   +IL EGYMDV++  +AG+Q+ V+S+G
Sbjct: 235 KIFNKSKLLFHFAEAKKAAR----------SEKHLILYEGYMDVIAAYKAGIQSGVASMG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT  Q+ +L +++P I++ +DGD PG+ AA +A  L     + G  +  ++L    DP
Sbjct: 285 TSLTTEQVYMLRRITPNILINYDGDPPGIHAAERATKLFG--QVQGFNLGIIVLPENLDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG   ++  +  +L  +D L +R     + +   E+          I  + D  
Sbjct: 343 DEYVKKYGVEKYQAEVAGALSSMDFLLERLANQYNLHNDREKLGYITASVQMIAGLNDPV 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
               Y   +  +     +          R  ++   H+      + L      + K  + 
Sbjct: 403 AADLYLDKLARQTGVTRESLKVTFVRERRKLQRAKNHQQAYQAPKSLPIDQPSEPKEEQA 462

Query: 480 PSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
               E        LL   I+          +     + +    KL  F        +   
Sbjct: 463 GIDLETRNPALDRLLYLFIHSDEARDYLLSQ--QFLFPDERYAKLAEFWLKYHQTHEGAE 520

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                  + E        +L   + +  + S   + +  ++    +           + +
Sbjct: 521 VTGFIDFIPE--------ELQGIIINMEMISMPPDYSKRELDDQLRALEKSK-----IDQ 567

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           Q  ++  Q+     K +      +   +  +  +
Sbjct: 568 QLNDLLNQLKDAQRKQDDSLELEIAQKVIALRRK 601


>gi|56477912|ref|YP_159501.1| DNA primase [Aromatoleum aromaticum EbN1]
 gi|56313955|emb|CAI08600.1| DNA primase [Aromatoleum aromaticum EbN1]
          Length = 609

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 186/623 (29%), Positives = 284/623 (45%), Gaps = 28/623 (4%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI+DLL  + I ++I +++   +   N     Y+ACCPFH EK+PSF  + +K FY
Sbjct: 2   IPQSFIQDLLARVDIVDVIERHLPLKKGGAN-----YFACCPFHGEKSPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
           +CF C   G  + FL    G  F+E+V+ LAA AG+ +P       + +K      LI  
Sbjct: 57  HCFGCGAHGSAVGFLMEYSGLPFVEAVKELAAQAGLQVPQERGPNPRNDKNPAHAALIEA 116

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + VA   +   L+  +      YL  RG+       F +GYAPD    LR       +  
Sbjct: 117 MTVAARHYRDQLR--QASAAIDYLKRRGVSGEIAARFGIGYAPDDWQGLRSIF--PDYDA 172

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++EAGL+I+ +     YDRFRNR++FPI+  RG+VIAFGGR L  GE  KYLNSPET 
Sbjct: 173 KALLEAGLVIENEAGRR-YDRFRNRIVFPIQDRRGRVIAFGGRVLDSGEP-KYLNSPETP 230

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+ LY    A   ++           +   I+VEGYMDV++L Q G+ N V++LGT
Sbjct: 231 LFEKGRELYGLLQAQKSIR----------DAGHAIVVEGYMDVVALAQHGIGNSVATLGT 280

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T + + +L + S RIV CFDGD  G +AA +A++  L  L     + F+ L    DPD
Sbjct: 281 ATTTHHINVLLRQSQRIVFCFDGDAAGRKAARRALESSLEALRDDVTLAFLFLPEQHDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           SF+R +G  AF +    +  L + L +    N + +T + RA L    K  +  I    L
Sbjct: 341 SFVRAHGADAFRQAAGAATTLTNFLLRELQSNCALDTAEGRARLVHEAKPLVTRITAPML 400

Query: 421 RYYYSQAIRD--RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-KLS 477
           R    ++I +  +  Q   +     S  GR                      L  G +  
Sbjct: 401 RLQIVKSIAEACQFSQSEIERAYGLSEEGRERPGEHAAAGPHHHPAAAPPRRLTPGMRPR 460

Query: 478 KKPSLREAALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           +KP      LL  ++ HPA+        +  +  +   L  +     +            
Sbjct: 461 RKPPSTVGTLLRLVLQHPALAARLPVDLVPTMNAEGEALVAIIDA-TNTGDLAANVGLGA 519

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + +R  E   GE L +   ++ DA    A  E    D  +         +   L +R++E
Sbjct: 520 LVERFRETPHGETLAKTAGELVDAEFDEAVVEVLFEDTLRKLHADTIAREIDGLTARERE 579

Query: 597 EIEKQIAQVTAKGEAEKTAILIS 619
                I +        +   L++
Sbjct: 580 SGLSSIERHRLAALLIEKMNLVN 602


>gi|300768134|ref|ZP_07078039.1| DNA primase [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|300494198|gb|EFK29361.1| DNA primase [Lactobacillus plantarum subsp. plantarum ATCC 14917]
          Length = 626

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 140/651 (21%), Positives = 262/651 (40%), Gaps = 50/651 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +   + I++ IGQYV   +   N      +  CPFH+E+TPSF  N+ K  
Sbjct: 4   RIPEEKVEQVRSAVNIADFIGQYVQLKKAGKNL-----FGLCPFHEERTPSFSVNEQKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           ++CFSC   G+  SF+  L   SF E+V ++A    + LP            K++ Q DL
Sbjct: 59  FHCFSCGRGGNVFSFIMDLENLSFPEAVVKVADFGHIDLPASYTAQSQPAAPKDQQQADL 118

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           ++L   +   + H L      +    YL ERG+D   I+ F +GYAP +   L +  ++ 
Sbjct: 119 LKLYADSAKMYQHILVNTELGEPALKYLHERGLDDETIKTFGIGYAPAN-QLLLDFFKEH 177

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235
               + + ++GL I+        DRF +R++FPI+ + G+VIAF GR L K     KYLN
Sbjct: 178 QSDYQLLRQSGLFIENQAGD-LRDRFVDRVLFPIKDASGRVIAFSGRILKKSPNEPKYLN 236

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LF+K   L+NF  A   ++              ++L EG+MDV++  ++G+QN V
Sbjct: 237 SPETKLFNKRSVLFNFDLARGPIR----------QQKSVVLFEGFMDVIAAYRSGIQNGV 286

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GT+LT+ Q+ +L +++  + +C+D D PG +A  +A+ L+  +      V  + +  
Sbjct: 287 ASMGTSLTDEQIYMLERVTDTLYVCYDSDMPGQKATDRALKLLGGNSRLNLGV--IQMPD 344

Query: 356 GEDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
           G DPD ++R  G+  F +              +    + +     ++      +   +  
Sbjct: 345 GMDPDEYLRAQGQEKFVQVFEDGKQTPTAFEMQYLKHDLNLQNTPDQLTYLQAVLQQLAQ 404

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS----------- 463
           +     +  Y   +             +                   P            
Sbjct: 405 LSSSVEQDLYLNQLVAEFDLDKDDLKQQLRSLVGQQAVRRGGGHSDEPQVAPPPAPAPLG 464

Query: 464 -QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
                           +    E  LL  L+N   +       +A   + ++  Q++  + 
Sbjct: 465 PPPATVDGSTNSGPLSRVEKAERLLLYRLLNDHDVWLRVM-AIAGFHFVHDSYQQILVYA 523

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            + F     F        + +     ++  L+             +      ++     +
Sbjct: 524 EAYFKTHNQFDLGNFTDFMTDSDLQPVVTSLE-----------FMDVANESSKEEIADLV 572

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +    + L  Q    + ++      G  +    L   L +++ Q  Q++ 
Sbjct: 573 NVIMNQQPLVEQINSKKAELTAAKQIGNRDLVQQLTLALIDLYRQQQQVQR 623


>gi|170725516|ref|YP_001759542.1| DNA primase [Shewanella woodyi ATCC 51908]
 gi|169810863|gb|ACA85447.1| DNA primase [Shewanella woodyi ATCC 51908]
          Length = 575

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 174/628 (27%), Positives = 294/628 (46%), Gaps = 56/628 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+  I I +LI   V   +   N       ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELVARIDIVDLIDAKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   G+ + F+       FI++++ LA   GV +P       ++++ +  DL +
Sbjct: 56  FYHCFGCGAHGNVIDFVMEYDRLDFIDAIEDLAGQLGVEVPREKGTGPRRDEGLSRDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A+ +F + L+   DK+    YL  RG+ +  +E F +G+APD    L    RQ   
Sbjct: 116 LMEEASLYFQNQLRQNNDKQKVLDYLAHRGLSNDVVEHFNIGFAPDGWDGLLSRYRQSQD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +++K++ AG++I+ DN    YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 176 AQDKLLTAGMVIENDNG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +   +          +++VEGYMDV++L Q GV   V+SL
Sbjct: 234 TPIFHKGNELYGLYELKQKHRDPQK----------VLIVEGYMDVVALAQFGVDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  +V C+DGD  G  AA++A++  L  L PGN+V F+ L  GED
Sbjct: 284 GTSTTADQFQLLLRSAKEVVCCYDGDRAGTEAAWRALETALPLLKPGNQVKFMFLPEGED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD+ +R  GK  FE  I E+  L + L++            ++  L       I  I+D 
Sbjct: 344 PDTMVRQVGKEVFENQIEEAKLLPEFLFETLAAQY----GSDKGTLAKQAIKLIEKIQDT 399

Query: 419 KLRYYYSQAIRDRLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L+    + +  +L     ++   +     +   K  + +  KG    L           
Sbjct: 400 VLQSLLLENLAYKLGMNSAEELKRKLGFSSKEQAKPLQTKALKGRGTPL----------- 448

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                     +  L+ +P + +   ++          L+ +                 ++
Sbjct: 449 -------RLAIALLVQNPLLGEGLPEQ--------PALKHIKMAGIELLTLLLDITRVQV 493

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                     E  +  ++      L     +    +++  +++ L ++   + + ++ +E
Sbjct: 494 KN---SAQLLEQFRGDEQLSTLKKLTQWDHQVADENLQLEFRKTL-IWLNNQYIEQRYQE 549

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVH 625
           +   + Q   K E  +   LI+++  + 
Sbjct: 550 L--SLKQNHTKEERIQLTKLIAVIKGLK 575


>gi|42519242|ref|NP_965172.1| DNA primase [Lactobacillus johnsonii NCC 533]
 gi|41583530|gb|AAS09138.1| DNA primase [Lactobacillus johnsonii NCC 533]
          Length = 603

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 152/634 (23%), Positives = 278/634 (43%), Gaps = 44/634 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI ++   + I ++I QYV  +++       DY   CPFH EKTPSF  N+ K F
Sbjct: 4   RIPEQFIDEVRNSVDIVDVISQYVSLEKKGK-----DYLGLCPFHQEKTPSFTVNEGKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESV+++A +A + +P    +  K       +    
Sbjct: 59  FKCFGCGKGGNVFKFLMYQDHLTFPESVRKVAELAHLHMPEGYGETVKPLSPLKKMY--- 115

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             AT+F+ H L   +  +R   Y  +R + S  +E FK+GYAPD+   L  +LRQ+G+++
Sbjct: 116 RQATEFYQHILLTTKVGERALEYAQKRELTSDLLEHFKVGYAPDNDTILLTYLRQEGYTD 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
           +++ E+GL ++  +    +DRFR+RLIFP+    G  + F GR +S  +++ KY+NSPET
Sbjct: 176 DELRESGLFVESQDG-QLFDRFRDRLIFPLGDESGYTVGFSGRRISNDKTIAKYMNSPET 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K K L++F  A    +          S   +IL EGYMDV++  +AG+Q+ V+S+G
Sbjct: 235 KIFNKSKLLFHFAEAKKAAR----------SEKHLILYEGYMDVIAAYKAGIQSGVASMG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT  Q+ +L +++P I++ +DGD PG+ AA +A  L     + G  +  ++L    DP
Sbjct: 285 TSLTTEQVYMLRRITPNILINYDGDPPGIHAAERATKLFG--QVQGFNLGIIVLPENLDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG   ++  +  +L  +D L +R     + +   E+          I  + D  
Sbjct: 343 DEYVKKYGVEKYQTEVAGALSSMDFLLERLANQYNLHNDREKLGYITASVQMIAGLNDPV 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
               Y   +  +     +          R  ++   H+      + L      + K  + 
Sbjct: 403 AADLYLDKLARQTGVTRESLKVTFVRERRKLQRAKNHQQAYQAPKSLPIDQPSEPKEEQA 462

Query: 480 PSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +  E        LL   I+          +     + +    KL  F        +   
Sbjct: 463 GTDLETRNPALDRLLYLFIHSDEARDYLLSQ--QFLFPDERYAKLAEFWLKYHQTHEGAE 520

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                  + E        +L   + +  + S   + +  ++    +           + +
Sbjct: 521 VTGFIDFIPE--------ELQGIIINMEMISMPPDYSKRELDDQLRALEKSK-----IDQ 567

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           Q  ++  Q+     K +      +   +  +  +
Sbjct: 568 QLNDLLNQLKDAQRKQDNSLELEIAQKVIALRRK 601


>gi|191638498|ref|YP_001987664.1| DNA primase G [Lactobacillus casei BL23]
 gi|190712800|emb|CAQ66806.1| DNA primase G [Lactobacillus casei BL23]
          Length = 595

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 163/633 (25%), Positives = 268/633 (42%), Gaps = 41/633 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   +  +L  + I++ IGQYV   +   N      +  CPFH+E TPSF  N+ K  +
Sbjct: 2   IPEATVDKVLKAVNIADYIGQYVQLRKTGQNL-----FGLCPFHEEHTPSFSVNEPKQIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CFSC   G+   F+      +F E+V+++A  AG+PL V        +   +    +++
Sbjct: 57  HCFSCGRGGNVFKFVMDYDNATFPEAVKKVADFAGMPLDVQVGHAAPVDPEISKQQHILQ 116

Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
              D FHH L N  + +    YL +RG+    IE F+LGYAP+ R  L   L  +    +
Sbjct: 117 DTADLFHHILMNTEKGQTALDYLHKRGLTDDTIEAFQLGYAPEERNLLVAFLNNRKVDYQ 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
               +GL ++       +DRF +R++FP+  S GQVI F GR LSK ++  KYLNSPET 
Sbjct: 177 DQRASGLFVEDQEG-KLFDRFNDRVMFPLTDSHGQVIGFSGRILSKDKTQAKYLNSPETK 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF+K   L+N   A     +              IL EGYMDV++  QAGV+  ++S+GT
Sbjct: 236 LFNKRDVLFNLHRAKADFGRDGGP----------ILFEGYMDVIAAYQAGVKTGIASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ ++  LS R+ +C+DGD+PG +A  +A+ ++  H     + + V+L  G DPD
Sbjct: 286 SLTTEQVDIISHLSKRLTVCYDGDEPGQKAIERAVAMLADHPR--LQTDVVVLPDGMDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FIR  G  AF+  +   L     + +        N    +          I  I +   
Sbjct: 344 EFIRARGAEAFQAQVKSVLTPTAFMLQFLARGVDMNNDQAKLTYLNAALKTIGKISNPVA 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y + + D                     + A  +    P            +   + 
Sbjct: 404 RAVYVKQLADTTGVPESALNQSL-----PAPQQAVPQQSSAPVSYQTAPVNQPVRPIDRY 458

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +  +  LL  + +   ++Q      A   +     Q L++       EQ          R
Sbjct: 459 TAAQRQLLYYVWHDDLVMQRLKN--AAFTFPAPHFQTLFTGWLDFLHEQPDGELAGFLDR 516

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +     +   +  QV         TEA I ++ Q    A  +         + + I++
Sbjct: 517 V-DPDLSGVAASVAMQVLPEA-----TEATIDELIQTITSASTV--------ERLQAIKQ 562

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            I +    G+ +K   L      +   + Q + 
Sbjct: 563 AITEAQRLGDKQKLGELTVQYVNLMKLLKQQQG 595


>gi|295693059|ref|YP_003601669.1| DNA primase [Lactobacillus crispatus ST1]
 gi|295031165|emb|CBL50644.1| DNA primase [Lactobacillus crispatus ST1]
          Length = 606

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 156/639 (24%), Positives = 283/639 (44%), Gaps = 49/639 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P DFI ++  ++ I ++I QYV  +++       DY   CPFH EKTPSF  N  K F
Sbjct: 4   RIPEDFISEVRSNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNADKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESV+R+A  A + +P  +            L+++ 
Sbjct: 59  FKCFGCGKGGNVFKFLMYKDDLTFPESVERVAEFAHIAMP--NGYGHNSGTKLNPLMQMH 116

Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A DF+H   L     +R   Y  +R +D   ++ FK+GYAP +   L  +LR KG+ +
Sbjct: 117 QDAVDFYHRVLLTTKAGERGMQYAQKRELDQEILDHFKIGYAPKADNVLITYLRSKGYQD 176

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
           + + ++GL +   +    YDRFR+RL+FP+ +  G+ I F GR +S  ++  KY+NSPET
Sbjct: 177 DDLAQSGLFVQARDG-QLYDRFRDRLMFPLDNENGRTIGFSGRRISDDKTEAKYMNSPET 235

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K K L++F  A    +              ++L EGYMDV++  +AGV++ ++S+G
Sbjct: 236 EIFTKSKVLFHFAEAKKAAR----------GEGHLVLYEGYMDVIAAYKAGVKSGIASMG 285

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ LL +++P I++ +DGDDPG+ A  +A  +          +  V+L    DP
Sbjct: 286 TSLTDDQIYLLRRITPNIIINYDGDDPGVHAEERAARMFNKDGNFNLGI--VVLPEKLDP 343

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG   + + +  +L   D   KR  +  + +   E+          I  +++  
Sbjct: 344 DEYVKKYGAEKYLEEVKGALTPTDFFLKRLEQKYNLDNDREKIAYLGEAVKEIAQVRNPV 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYW----------KKNARHRDQKGPSQRLMQS 469
            +  Y++ +               +   R            ++N+       P       
Sbjct: 404 EQDMYTEKLAKSSGVSIASLKANLAKERRRNNRARNHVRNSQRNSPDYPIDVPLPGDEDV 463

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              +  + K PS  +  LL   I+     +   +      + N + + L           
Sbjct: 464 PTEQSVVEKNPS--QTRLLYLFIHSTDAQKYMLE--GQFHFPNQDFETLAQDWLKYAETH 519

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    +     + E+        L   + DA +     ++ I +V      AL L  + R
Sbjct: 520 ENPQIDGFLDFIPEQ--------LQGIIVDAEMAQMPKDSTIQEV-----DALVLALKRR 566

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +  +  E++ Q+     K +A+    +   +  +   +
Sbjct: 567 NIYSRLNELQAQLQDAKRKNDAQGIIAITQEIIGLKRIL 605


>gi|186472769|ref|YP_001860111.1| DNA primase [Burkholderia phymatum STM815]
 gi|184195101|gb|ACC73065.1| DNA primase [Burkholderia phymatum STM815]
          Length = 630

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 170/661 (25%), Positives = 280/661 (42%), Gaps = 64/661 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGKYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-------- 114
           +CF C   G  + FL    G SF E+V  LA   G+ +P     +               
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLSFPEAVNDLAQSVGLTVPQEPSPMRGGASGGAAYGAGGE 116

Query: 115 -----------TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAP 163
                      T L  +++ A++F+   L+         YL +RG+     + F LGYAP
Sbjct: 117 AYAPAVPKAVTTALSDVMQTASEFYKAQLRG--APNAIQYLKKRGLTGEIAKRFGLGYAP 174

Query: 164 DSRY---SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220
           D      +   + R     E  ++      D       YDRFR R++FPIR+ +GQVI F
Sbjct: 175 DGWQNLEAAFPNYRDDALVESGLVIVSEKSDAQGQNRRYDRFRERVMFPIRNVKGQVIGF 234

Query: 221 GGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGY 280
           GGR L  GE  KYLNSPET LF+KG  LY  F A   ++             ++++VEGY
Sbjct: 235 GGRVLDGGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQKYVLVVEGY 283

Query: 281 MDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340
           MDV++L Q G +N V++LGTA T   ++ L + +  +V  FDGD  G RAA +A+D  L 
Sbjct: 284 MDVVALAQLGFENAVATLGTACTPIHVQKLMRQTDTVVFSFDGDSAGRRAARRALDACLP 343

Query: 341 HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE 400
           H      + F+ L    DPDS++R +G  AF + +  ++PL   L       +  + P+ 
Sbjct: 344 HAADNRTIRFLFLPAEHDPDSYVREFGTQAFAEQVRRAMPLSQFLLNEVLAGKELDQPEG 403

Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
           RA      K  +  +    LR        DRL   F++         R            
Sbjct: 404 RARALFDAKPLLQMLPANALRAQIMHMFADRLDVPFEEVAALCEVDARIAA--------- 454

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                 +  S    K  +  +  E   L  L+ HP I+    +E            +L+ 
Sbjct: 455 ------VARSAPARKDRRSVTGLEQRALRNLVMHPRIVAVLDEEEERALLTVTRHGELFE 508

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAG--LWSATTEANIVD 573
            + +           ++   L   G     F E+ +++     +    L     +A + +
Sbjct: 509 EVTTHARGLGDSAEFQLLSDLLRNGANAPTFEEIFREILDYDENVRDLLLKNPEDATVAE 568

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            R+ +++      +  +L  + +   +++ Q++ +     T   +    E+      ++ 
Sbjct: 569 ERREHERLAGEELKAAILKMRYDAYSERLTQLSRQSS--LTPEELKEYQELDRTRADMKR 626

Query: 634 Q 634
           Q
Sbjct: 627 Q 627


>gi|113953836|ref|YP_730818.1| DNA primase [Synechococcus sp. CC9311]
 gi|113881187|gb|ABI46145.1| DNA primase [Synechococcus sp. CC9311]
          Length = 691

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 179/685 (26%), Positives = 295/685 (43%), Gaps = 77/685 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I +++G++V   ++       ++   CPFHD+  PS   +  K F
Sbjct: 3   RLHPRTIDAVKERADIVDVVGEHVVLKKKGR-----EFVGVCPFHDDSKPSMTVSPQKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           YYCFSC   G+ + FL      SF + V  LA    +P+  VD   +++ +     +  L
Sbjct: 58  YYCFSCGAGGNSIKFLMEFQRQSFSDVVLDLARRYQLPVETVDGPQQERLRQQLSRRDHL 117

Query: 118 IRLIEVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            R + +A+ +F   LK+A  K    Y  D+RG+    +E F+LGYAPD    L +HL+  
Sbjct: 118 HRALALASGWFRSQLKSASGKEALAYLRDQRGLSEATMETFELGYAPDQWDGLLKHLQHV 177

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G S E +  AGL++        YDRFR R+I PIR  +G+VI FGGR+L   +  KYLN
Sbjct: 178 EGLSPELLESAGLVVPRKGGNGFYDRFRGRVIVPIRDRQGRVIGFGGRSLDGSDP-KYLN 236

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK+L+    A N ++K  R           ++VEGY DV++L  AGV N V
Sbjct: 237 SPETEVFEKGKHLFGLDQAANAIRKDDRA----------VVVEGYFDVIALHAAGVTNAV 286

Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352
           +SLGTAL+  Q+  L + S   RIVL FD D  G+RAA +AI  V    + G   +  + 
Sbjct: 287 ASLGTALSGQQITQLCRCSDGKRIVLNFDADRAGIRAANRAIGEVEQLALQGQLELRVLH 346

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G+DPD +++ +G   +  L+ ++   +D   ++  E R     D+  +    L   +
Sbjct: 347 TPSGKDPDEYLKDHGAGDYRALLDQAPLWLDWQIEQVLEGRDLTKADQFQQAVSGLVELL 406

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    +R +Y Q + +RL     +   +     R   +  R   +    +        
Sbjct: 407 GKLPQSAIRTHYLQQVAERLSGGQGRLALQLEQDLRQQVQGQRWHGRSARHE-------- 458

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVEQ 529
           K     +    EA +L   ++ P    +   EL       +     + LWS +     E+
Sbjct: 459 KAGEVSQRERCEAEILRIYLHCPIHRSQVRCELRQRELEDFALQHHRLLWSAITDL--EE 516

Query: 530 KYFLPEEIHQ---------RLCERGFGELLKQ---LDRQVRDAGLWSATTEANIVDVR-- 575
                  +            L +     LL     L+     A L      A +  +   
Sbjct: 517 GNIGSGRLEAISRGKDPGHELADLDLPRLLTDQLLLENSALVARLTPLLEPAELQRLALA 576

Query: 576 ---------QGYQQALALYKRFRLL-----SRQKEEIEKQIAQVTAKGEAE--------- 612
                        +    +KR R L     S++ E +E+ IA + AK + +         
Sbjct: 577 RPMDVLRGTAAILERQKSHKRCRHLLEAWGSQRLETLERCIASLIAKEQEQTESAGGEDM 636

Query: 613 --KTAILISILHEVHIQIHQIESQE 635
             +   +   L+   +++ ++   E
Sbjct: 637 EGRIQEMFEQLNADALRLQELYYSE 661


>gi|326403200|ref|YP_004283281.1| DNA primase [Acidiphilium multivorum AIU301]
 gi|325050061|dbj|BAJ80399.1| DNA primase [Acidiphilium multivorum AIU301]
          Length = 609

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 191/639 (29%), Positives = 290/639 (45%), Gaps = 33/639 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L    P++ L+ + V  +R   +        CCPFH+EK+PSF+  D   
Sbjct: 1   MSLPPHFLDELRHRTPLAPLVARRVRLERAGRDQ-----KGCCPFHNEKSPSFYVYDDH- 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C   GD +SF+    G SFIE+V+RLAA AG+ +P   P   +  K + +L  +
Sbjct: 55  -YHCFGCGAHGDAISFVMQSEGASFIEAVERLAAEAGLEVPKPSPAAAEAAKREAELADV 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A   +   L     +    YL  RG+D+  I  F LG++ + R SLR  L ++G +E
Sbjct: 114 LEAAAAEYRRRLALPEGEAARAYLAARGLDAPTIARFGLGWSGEGRGSLRAALARQGIAE 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            +++EAGL+        + D F  R++FPIR   G++++FGGR L      KYLN PET 
Sbjct: 174 SRLVEAGLMKQ--GERGAVDYFYGRVMFPIRDRAGRMVSFGGRLL-GDGQPKYLNGPETA 230

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K + LY    A   ++          + + +I+VEGYMDV++L  AG +  V+ LGT
Sbjct: 231 LFSKRRTLYGIDTARPAIR----------AGAALIVVEGYMDVIALAAAGFEGAVAPLGT 280

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE  L  LW+LSPR +LC DGD  G RAA +AI+L L  L P   +  + L   +DPD
Sbjct: 281 ALTESHLEELWRLSPRPILCLDGDAAGRRAALRAIELALKQLTPDRGLAVLTLPGADDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           SFIR  G  AF   +     L D L+    E+    TP+ RA L   L+     I+D+ L
Sbjct: 341 SFIRREGAAAFAARLAAVPSLADTLYLLLAESADQATPEGRAALRHRLEEVARTIEDKAL 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y  A+ DR     +         GR   + A  R   G   R +         S   
Sbjct: 401 AGEYRGALLDRFFAARRGRQAAGRAPGRAPDR-ASGRAPAGAPPRPLGLPRPSIDPSVAR 459

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             R   L   LI HP +L    +    +   + +  +L + +       +      +   
Sbjct: 460 LRRARMLTGLLIAHPDLLPALEEAFGLLALPD-DCARLRAAMSVWLATAEALDSALLLNH 518

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L + G  E  +                +    +  +     +        L +Q EE  +
Sbjct: 519 LAQSGLREAAE----LALSVLPRRGRGKETAGEALESLWYGIYGLMNLDWLRQQCEE--Q 572

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +I       E + T    + L  +    ++ E  EA +E
Sbjct: 573 RIR-----FEQDPTPENNNRLRALVEARYRAERGEADLE 606


>gi|118617124|ref|YP_905456.1| DNA primase [Mycobacterium ulcerans Agy99]
 gi|118569234|gb|ABL03985.1| DNA primase DnaG [Mycobacterium ulcerans Agy99]
          Length = 656

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 142/654 (21%), Positives = 253/654 (38%), Gaps = 46/654 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I +++G YV   R             CPFH+EK+PSFH   + G 
Sbjct: 20  RISDRDIAAIREGARIEDVVGDYVQLRRAGA----DSLKGLCPFHNEKSPSFHVRPNHGH 75

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD  +F+  +   SF+E+V+ LA   G  +         +     ++ LI 
Sbjct: 76  FHCFGCGEGGDVYAFVQKIEHVSFVEAVELLADRIGHTISYTGAATSVQRDRGSRSRLIA 135

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A  F+  +L++        YL ER  D+ A   F  G+AP    SL +HL++KGF 
Sbjct: 136 ANAAAAAFYAEALESPEAALARKYLTERSFDAAAAHHFGCGFAPSGWDSLTKHLQRKGFE 195

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            +++  AGL           DRF  RL++PIRSS G+VI FG R L   + +  KY+N+P
Sbjct: 196 FKELEAAGLSRQ--GRRGPIDRFHRRLLWPIRSSAGEVIGFGARRLFDDDPMDAKYVNTP 253

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K   L+    A   + +              ++VEGY DV+++  AGV   V+S
Sbjct: 254 ETLLYKKSSVLFGIDLAKRDIAR----------GHQAVVVEGYTDVMAMHLAGVTTAVAS 303

Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            GTA  +  L +L +L          ++  FDGD+ G  AA KA D          +   
Sbjct: 304 CGTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDEAGRAAALKAFDGEQNLAG---QSFV 360

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +   G DP       G TA   L+    PL +   +         + + R         
Sbjct: 361 AVAPDGMDPCDLRLASGDTALRDLVARRTPLFEFAIRTALAESDLESAEGRVGALRRCVP 420

Query: 411 CINHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
            +  IKD  LR  Y++ +   +      Q+  +   E     R  +  A  +  +  +  
Sbjct: 421 MVGQIKDPTLRDEYARQLAGWVGWDDVAQVIDRVRGEAKNATRPNRGGAATKTPRRVAHE 480

Query: 466 LM-----QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                  + +  +          +   L + + +PA+    +  L    + +     + +
Sbjct: 481 STDTGSAEPAAARPDPRDPTLWPQREALKSALQYPALTGPVFDTLTVESFTHPGYAAVRA 540

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            + +           +    + ++    L   L  ++    +     +         Y  
Sbjct: 541 AIDAAGGTATGVTGAQWMDMVRQQTTSPLTSGLISELTVETIQVDEEKLP------RYIG 594

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +    +   + RQ  E++ ++ +++   + ++   L   L  +      +  Q
Sbjct: 595 GVLARLQEVWMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 648


>gi|251796254|ref|YP_003010985.1| DNA primase [Paenibacillus sp. JDR-2]
 gi|247543880|gb|ACT00899.1| DNA primase [Paenibacillus sp. JDR-2]
          Length = 612

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 160/637 (25%), Positives = 276/637 (43%), Gaps = 41/637 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P D I+ +  H  I + + +YV   +             CPFH EKTPSF        
Sbjct: 5   KIPDDVIEAVRRHHDIVDTVSKYVHLSKNGK-----YMKGLCPFHSEKTPSFTVTPELQI 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK---EKIQTDLI 118
           ++C+ C   G+ + F+  +   +F E+V+ LA  AG+P+   +P   K    +  ++ ++
Sbjct: 60  FHCYGCGKTGNVIRFVEEIESYTFPEAVRVLAEEAGIPVTWANPDGSKPTAADTERSAVL 119

Query: 119 RLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              E+    +++ L N    +    YL +RG+    I  F +GYAP+   +L   L  + 
Sbjct: 120 EAHELTAKLYNYLLNNTQHGRAAKDYLRDRGLGDKLINHFMIGYAPEQWDTLSRFLTARN 179

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           F    + + GLL    + +   DRFR R++FPI    G+V AF GR + +G+  KYLNSP
Sbjct: 180 FDSSLMEKGGLLSAKSDGSGYVDRFRGRIMFPIWDRDGKVTAFAGRIIGEGQP-KYLNSP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+LF K + +YN   A   ++KS            ++L EGYMDV+    AGV+N +++
Sbjct: 239 ETMLFTKSRTIYNLHHARPAIRKS----------KQVVLFEGYMDVIKSWSAGVKNGIAT 288

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE    +L + +  IV+C+DGDD G  AA K+I +       G RV   +L +G+
Sbjct: 289 MGTALTEEHCSILARQAEEIVICYDGDDAGQAAAMKSIPM---LEGAGLRVMVAMLPKGK 345

Query: 358 DPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD +I  YG   +  ++I + +           +N      + R    +     +  + 
Sbjct: 346 DPDEYITEYGPDDYLREVIDQPVTTTKFKLIYSRKNHILLKEEGRKNYLLEAAGIVAELD 405

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV---- 472
               R  Y Q +        +    +     +  +K    RD    S    ++       
Sbjct: 406 SAIEREVYLQELSREFNFPLEVLKQDCHIKHQELQKKKPGRDNNDNSWNNGRNENRRRSG 465

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
              L    +  E  LL  ++    + Q  +++L D  ++  +   L ++L++ + +    
Sbjct: 466 PPVLMPAYTYVERRLLHVMMRDRDVAQTVHEKLGD-AFNIEDHAALAAYLYAFYAQGYDP 524

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                   L +         +     D     A  EA+I D+ +          RFR + 
Sbjct: 525 DAGRFIASLQDERLERTAAAILMMDGDFPFDDAILEADIQDIIKV--------PRFREID 576

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           R+KEE    + Q    G+    A ++S +  +  Q+ 
Sbjct: 577 RKKEE----MMQAERAGDHLLAAQMLSEIITLERQLK 609


>gi|328954515|ref|YP_004371849.1| DNA primase [Desulfobacca acetoxidans DSM 11109]
 gi|328454839|gb|AEB10668.1| DNA primase [Desulfobacca acetoxidans DSM 11109]
          Length = 606

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 169/638 (26%), Positives = 273/638 (42%), Gaps = 59/638 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   + ++    PI+ +IGQYV    R            CPFH EKTPSF     +  +
Sbjct: 5   IPEAKLLEIKEAAPIAEVIGQYVSLKPRGR-----YLVGLCPFHAEKTPSFTVYPERNIF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLIR 119
           +C+ C V G+  +FL   L  +F E+   LA   G+PL     + P   +  + +  L  
Sbjct: 60  HCYGCGVGGNVFTFLMQHLRLTFPEAATELAKKYGIPLNLKKDLTPAEARASRQRQALYE 119

Query: 120 LIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + E+A  FF  +L +    K +  YL  RG+       F+LG+APD    L   L ++G 
Sbjct: 120 VNELAAKFFTENLGHPHLGKPVREYLARRGLPEGVAASFRLGFAPDDWRLLIRALSERGA 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S E   + GL I   +S+  YDRFR RLIFPI   +G+VIAFGGR +      KYLNSPE
Sbjct: 180 SLEAAQQLGL-IVPHHSSGHYDRFRGRLIFPILDLQGRVIAFGGRII-ADGEPKYLNSPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + L+ KG+NLY  F A   ++K           +  ILVEGYMD+L+L    ++ VV++L
Sbjct: 238 SSLYSKGRNLYGLFQAREAIRKQ----------NLAILVEGYMDLLALRARNIEPVVATL 287

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT  Q+RLL   + R VL FDGD+ GL+A  +++            V  ++L  GED
Sbjct: 288 GTALTREQVRLLKGYTSRAVLVFDGDEAGLKAMRRSLPHFAGEH---LPVRVLVLPPGED 344

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS+    G   F     E+ PL + +    T N   +  +++      L+       D 
Sbjct: 345 PDSYAAKQGVEIFRNPWEEAKPLFEYILDDATRNI-GDELEKKLAALETLRPYFQSDVDP 403

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +  + +    RL           +                        +         
Sbjct: 404 VEKALWLRLTAKRLTVSESALEESLANK--------------------RPALSAPMVCQA 443

Query: 479 KPSLREAALLLTLINHPAILQ--EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                E +L+  ++ +P IL   +  + L    + + +LQ +   + +   +  Y     
Sbjct: 444 TALNLERSLIKFILANPEILPRLDVEEYLEQ--FTDIKLQTIARQICNCHRQLGYLDHSL 501

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +  +L +      +  L          S   E    +  +   +      R R L RQ++
Sbjct: 502 LVTQLDDDDLCRQVCSL----------SLAAEEYPPNHLELLIEDYRRSFRKRQLKRQQK 551

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           ++  ++ +V           L++ + E+  ++  +ES 
Sbjct: 552 KLRLELQEVYQARNGGDFLALVAQVREIEQRLRDLESS 589


>gi|256850359|ref|ZP_05555787.1| DNA primase [Lactobacillus crispatus MV-1A-US]
 gi|256712756|gb|EEU27749.1| DNA primase [Lactobacillus crispatus MV-1A-US]
          Length = 609

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 156/639 (24%), Positives = 283/639 (44%), Gaps = 49/639 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P DFI ++  ++ I ++I QYV  +++       DY   CPFH EKTPSF  N  K F
Sbjct: 7   RIPEDFISEVRSNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNADKQF 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESV+R+A  A + +P  +            L+++ 
Sbjct: 62  FKCFGCGKGGNVFKFLMYKDDLTFPESVERVAEFAHIAMP--NGYGHNSGTKLNPLMQMH 119

Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A DF+H   L     +R   Y  +R +D   ++ FK+GYAP +   L  +LR KG+ +
Sbjct: 120 QDAVDFYHRVLLTTKAGERGMQYAQKRELDQEILDHFKIGYAPKADNVLITYLRSKGYQD 179

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
           + + ++GL +   +    YDRFR+RL+FP+ +  G+ I F GR +S  ++  KY+NSPET
Sbjct: 180 DDLAQSGLFVQARDG-QLYDRFRDRLMFPLDNENGRTIGFSGRRISDDKTEAKYMNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K K L++F  A    +              ++L EGYMDV++  +AGV++ ++S+G
Sbjct: 239 GIFTKSKVLFHFAEAKKAAR----------GEGHLVLYEGYMDVIAAYKAGVKSGIASMG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ LL +++P I++ +DGDDPG+ A  +A  +          +  V+L    DP
Sbjct: 289 TSLTDDQIYLLRRITPNIIINYDGDDPGVHAEERAARMFNKDGNFNLGI--VVLPEKLDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG   + + +  +L   D   KR  +  + +   E+          I  +++  
Sbjct: 347 DEYVKKYGAEKYLEEVKGALTPTDFFLKRLEQKYNLDNDREKIAYLGEAVKEIAQVRNPV 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYW----------KKNARHRDQKGPSQRLMQS 469
            +  Y++ +               +   R            ++N+       P       
Sbjct: 407 EQDMYTEKLAKSSGVSIASLKANLAKERRRNNRARNHVRNSQRNSPDYPIDVPLPGDEDV 466

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              +  + K PS  +  LL   I+     +   +      + N + + L           
Sbjct: 467 PTEQSVVEKNPS--QTRLLYLFIHSTDAQKYMLE--GQFHFPNQDFETLAQDWLKYAETH 522

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    +     + E+        L   + DA +     ++ I +V      AL L  + R
Sbjct: 523 ENPQIDGFLDFIPEQ--------LQGIIVDAEMAQMPKDSTIQEV-----DALVLALKRR 569

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +  +  E++ Q+     K +A+    +   +  +   +
Sbjct: 570 NIYSRLNELQAQLQDAKRKNDAQGIIAITQEIIGLKRIL 608


>gi|148259872|ref|YP_001233999.1| DNA primase [Acidiphilium cryptum JF-5]
 gi|146401553|gb|ABQ30080.1| DNA primase [Acidiphilium cryptum JF-5]
          Length = 609

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 191/639 (29%), Positives = 290/639 (45%), Gaps = 33/639 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  F+ +L    P++ L+ + V  +R   +        CCPFH+EK+PSF+  D   
Sbjct: 1   MSLPPHFLDELRHRTPLAPLVARRVRLERAGRDQ-----KGCCPFHNEKSPSFYVYDDH- 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C   GD +SF+    G SFIE+V+RLAA AG+ +P   P   +  K + +L  +
Sbjct: 55  -YHCFGCGAHGDAISFVMQSEGASFIEAVERLAAEAGLEVPKPSPAAAEAAKREAELADV 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A   +   L     +    YL  RG+D+  I  F LG++ + R SLR  L ++G +E
Sbjct: 114 LEAAAAEYRRRLALPEGEAARAYLAARGLDAPTIARFGLGWSGEGRGSLRAALARQGIAE 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            +++EAGL+        + D F  R++FPIR   G++++FGGR L      KYLN PET 
Sbjct: 174 SRLVEAGLMKQ--GERGAVDYFYGRVMFPIRDRAGRMVSFGGRLL-GDGQPKYLNGPETA 230

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K + LY    A   ++          + + +I+VEGYMDV++L  AG +  V+ LGT
Sbjct: 231 LFSKRRTLYGIDTARPAIR----------AGAALIVVEGYMDVIALAAAGFEGAVAPLGT 280

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE  L  LW+LSPR +LC DGD  G RAA +AI+L L  L P   +  + L   +DPD
Sbjct: 281 ALTESHLEELWRLSPRPILCLDGDAAGRRAALRAIELALKQLTPDRGLAVLTLPGADDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           SFIR  G  AF   +     L D L+    E+    TP+ RA L   L+     I+D+ L
Sbjct: 341 SFIRREGAAAFAARLAAVPSLADTLYLLLAESADQATPEGRAALRHRLEEVARTIEDKAL 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y  A+ DR     +         GR   + A  R   G   R +         S   
Sbjct: 401 AGEYRGALLDRFFAARRGRQAAGRAPGRAPDR-ASGRAPAGAPPRPLGLPRPSIDPSVAR 459

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             R   L   LI HP +L    +    +   + +  +L + +       +      +   
Sbjct: 460 LRRARMLTGILIAHPDLLPALEEAFGLLALPD-DCARLRAAMSVWLATAEALDSALLLNH 518

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L + G  E  +                +    +  +     +        L +Q EE  +
Sbjct: 519 LAQSGLREAAE----LALSVLPRRGRGKETAGEALESLWYGIYGLMNLDWLRQQCEE--Q 572

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +I       E + T    + L  +    ++ E  EA +E
Sbjct: 573 RIR-----FEQDPTPENNNRLRALVEARYRAERGEADLE 606


>gi|326791439|ref|YP_004309260.1| DNA primase [Clostridium lentocellum DSM 5427]
 gi|326542203|gb|ADZ84062.1| DNA primase [Clostridium lentocellum DSM 5427]
          Length = 587

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 161/612 (26%), Positives = 274/612 (44%), Gaps = 34/612 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP   I+++     I ++I +Y    ++        Y   CPFH EKTPSF  ++ K 
Sbjct: 1   MRYPEHVIEEVREKSDIVSIISEYTALTKKG-----HSYTGLCPFHSEKTPSFSVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118
            YYCF C   G+ ++FL      +FIE+++ LA    + L       +  +K K +  L+
Sbjct: 56  LYYCFGCGAGGNVITFLMQKESMTFIETIKYLAERENIKLDETYLSEEEVEKNKKRQHLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +++ +  FFH+ L+  + K    YL +RG+    I+ F LGYA      L E+L+QKG+
Sbjct: 116 EILKESARFFHYQLRQEQHKSALTYLTDRGLSLETIKQFGLGYASPQFNELYEYLKQKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S+E ++E+GL +   NS   YDRF +R+IFPI     +VIAFGGR L  G   KYLNSPE
Sbjct: 176 SDELLLESGLFLSSKNSQMPYDRFADRIIFPIFDLSKKVIAFGGRVL-DGSLPKYLNSPE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
            +LF+K + LY    A              +SSS+ ILVEGYMDV+++ QAG    ++SL
Sbjct: 235 NLLFNKSRVLYGLHLAK------------TSSSSYFILVEGYMDVIAMHQAGFNQTIASL 282

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T    +L+ +    +V+ +D D  G +AA +AI +       G +V  + L  G+D
Sbjct: 283 GTAFTPGHAKLIKRHVKEVVILYDSDGAGQKAALRAIPI---LRNEGIKVKVLQLKEGKD 339

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD F++ +G  A +KLI E+   +        +    + P+E+ +    +   +      
Sbjct: 340 PDEFLKTHGYEAMKKLIEEAPVDIWFQVLHVEKKYQLSNPEEKVKFLQEIATILAESSSS 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +  Y   I  + Q     +  E + +     K  R + ++ PS    Q          
Sbjct: 400 IEQAIYIGEICSKYQIDEAAFKAEMNQHQGQILKRVREKAKEPPSMMQKQQLFNN----- 454

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E   L TL ++P + +   + +    +    L  L   +  +             
Sbjct: 455 -----EVIFLATLYHYPQLGRHILKYIKPEMFQEELLYDLAKAIMENLEMGDEVDLNYFT 509

Query: 539 QRLCERGFGELLKQ-LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +  E     ++   L  + +         +    +V++  +  +    +     ++ + 
Sbjct: 510 TKYPEVNEQNIISHVLIYKDQRYEDMEILQKMMTENVKRLNKTYIEKRLKQTTDIKEVQN 569

Query: 598 IEKQIAQVTAKG 609
           +  Q  ++    
Sbjct: 570 LLFQKKELDKLN 581


>gi|157374212|ref|YP_001472812.1| DNA primase [Shewanella sediminis HAW-EB3]
 gi|157316586|gb|ABV35684.1| DNA primase [Shewanella sediminis HAW-EB3]
          Length = 573

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 175/625 (28%), Positives = 296/625 (47%), Gaps = 56/625 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+  I I +LI   V   +   N       ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELVARIDIVDLIDAKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   G+ + F+       FI++++ LA   GV +P       K+++ +  DL +
Sbjct: 56  FYHCFGCGAHGNVIDFVMEYDRLDFIDAIEDLAGQLGVEVPREQGTGPKRDEGLSRDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A+ +F + L+   DK+    YL  RG+ +  +E F +G+APD    L    RQ   
Sbjct: 116 LMEEASLYFQNQLRQHNDKQKVLEYLTHRGLSNEVVEHFNIGFAPDGWDGLLSRYRQNQD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +++K++ AG++I+ DN    YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 176 AQDKLLTAGMVIENDNG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +              +++VEGYMDV++L Q GV   V+SL
Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------KQVLIVEGYMDVVALAQFGVDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  ++ C+DGD  G+ AA++A++  L  L PGN+V F+ L  GED
Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDKAGVEAAWRALETALPLLKPGNQVKFMFLPEGED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD+ +R  GK  FE  + ++  L + L++   +        ++  L          I+D 
Sbjct: 344 PDTMVRQVGKEVFESQVNDAQELPEFLFETLAKRY----GSDKGTLAKQAITLTEKIQDT 399

Query: 419 KLRYYYSQAIRDRLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L+    +++  +L     ++   +     +   K  + +  KG    L           
Sbjct: 400 VLQSLLLESLAYKLGMNSAEELKRKLGFSSKEQVKPLQKKALKGRGTPL----------- 448

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                     +  L+ HP++ +   ++          L+ L        +        ++
Sbjct: 449 -------RLAIALLVQHPSLGEGLPEQ--------PALKHLKMAGIELLILLLDETRVKV 493

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                     E  +   +      L     +    +++Q +++ L ++   + + ++ +E
Sbjct: 494 KH---SAQLLEQFRGDKQLSTLKKLTQWDHQVADENLQQEFRKTL-IWLNNQYIEQRYQE 549

Query: 598 IEKQIAQVTAKGEAEKTAILISILH 622
           +   + Q   K E  +   LIS++ 
Sbjct: 550 L--SLKQNHTKEERIQLTKLISVIK 572


>gi|78188526|ref|YP_378864.1| DNA primase [Chlorobium chlorochromatii CaD3]
 gi|78170725|gb|ABB27821.1| DNA primase [Chlorobium chlorochromatii CaD3]
          Length = 660

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 171/660 (25%), Positives = 275/660 (41%), Gaps = 50/660 (7%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M+  P   I ++     I +++  YV       N     Y A  PF  EKTPSF  +  K
Sbjct: 1   MSMIPPAIIDEVRQAADIVDVVSDYVALQPSGRN-----YKALSPFTQEKTPSFIVSPDK 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLI 118
             Y CFS    G+  SF+  +    F+E+++ +A  AG+ +    +PK +++ + +    
Sbjct: 56  QIYKCFSTGKAGNVFSFIMEMEKVPFMEALKLVAQRAGIDISRYTEPKGKQEGEEEQGSG 115

Query: 119 RLIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             +  A   FH  LK         Y+++ERG+    I  F LGYAP+S   L    R++G
Sbjct: 116 AALRWAARMFHSLLKQPAGAEGWRYFVEERGLREETINRFGLGYAPESWDFLLREARREG 175

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNS 236
              E+++E GLL+      + YD FR+R+IFPI S  GQV+ FGGR L   E   KYLNS
Sbjct: 176 IKSEQLVELGLLVSHREKQSLYDSFRHRVIFPIFSRGGQVVGFGGRALVSDERSPKYLNS 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ +F K K LY    A N +++  R           ILVEGYMDVL+L QAG+ N V+
Sbjct: 236 PESAMFAKSKLLYGLHFAKNEIRRQERA----------ILVEGYMDVLALHQAGLTNAVA 285

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S GTALT YQ ++L   S  ++  +D D  G ++    ID+++           ++L  G
Sbjct: 286 SCGTALTRYQAKMLRHYSEHVLFVYDADKAGQKSMMSGIDILVSEQ---MVPQVLMLPEG 342

Query: 357 EDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           +DPDSF+R  G+  F +     ++   D          +F+TP+++AE    +   I  I
Sbjct: 343 DDPDSFVRREGRQGFLQYAESHTMGFQDFQLAFFEAAGAFSTPEQKAEALRVMVRTIALI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS----- 470
             +  R  Y+Q +  ++                   K       K  +     SS     
Sbjct: 403 PKRAQRELYAQELSKKVGLTVTALRELLGNATSAVAKQQSCTPSKASATAPTSSSATNAT 462

Query: 471 ----------LVKGKLSKKPSLREAALLLTLINHPA----ILQEQYQELADIRYDNNELQ 516
                     L   +     S+ E   L  L+        +L       + +   +   Q
Sbjct: 463 SAPTIPHAPNLPNAQALPPLSVLEKTFLKALLESTQYGTAVLGFAASHQSMLELRHPLAQ 522

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCE------RGFGELLKQLDRQVRDAGLWSATTEAN 570
           ++++ L   +       PE     + E          +L   L      +  W    +  
Sbjct: 523 EIFAHLIHRYH-NIAADPEATIDMVSEISAFTNPETRDLASTLLLDPPISPKWQQQNDLF 581

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               R+     L  +K   +L    +E  K + Q+  +   E+   L      +  +I +
Sbjct: 582 SEQARRCLAMFLDAFKNL-VLEPLLDEKNKLMEQIRVEENVEREIELSRQKIVLDKKIRE 640


>gi|329667248|gb|AEB93196.1| DNA primase [Lactobacillus johnsonii DPC 6026]
          Length = 603

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 150/634 (23%), Positives = 278/634 (43%), Gaps = 44/634 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI ++   + I ++I QYV  +++       DY   CPFH EKTPSF  N+ K F
Sbjct: 4   RIPEQFIDEVRNSVDIVDVISQYVSLEKKGK-----DYLGLCPFHQEKTPSFTVNEGKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESV+++A +A + +P    +  K       +    
Sbjct: 59  FKCFGCGKGGNVFKFLMYQDHLTFPESVRKVAELAHLHMPEGYGETVKPLSPLKKMY--- 115

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             AT+F+ H L   +  +R   Y  +R + S  +E FK+GYAPD+   L  +LRQ+G+++
Sbjct: 116 RQATEFYQHILLTTKVGERALEYAQKRELTSDLLEHFKVGYAPDNDAILLTYLRQEGYTD 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
           +++ E+GL ++  +    +DRFR+RL+FP+    G  + F GR +S  +++ KY+NSPET
Sbjct: 176 DELRESGLFVESQDG-QLFDRFRDRLMFPLGDESGYTVGFSGRRISNDKTIAKYMNSPET 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K K L++F  A    +          S   +IL EGYMDV++  +AG+++ V+S+G
Sbjct: 235 KIFNKSKLLFHFAEAKKAAR----------SEKHLILYEGYMDVIAAYKAGIKSGVASMG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT  Q+ +L +++P I++ +DGD PG+ AA +A  L     + G  +  ++L    DP
Sbjct: 285 TSLTTEQVYMLRRITPNILINYDGDPPGIHAAERATKLFG--QVQGFNLGIIVLPENLDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG   ++  +  +L  +D L +R     + +   E+          I  + D  
Sbjct: 343 DEYVKKYGVEKYQAEVAGALSSMDFLLERLANQYNLHNDREKLGYITASVQMIAGLNDPV 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
               Y   +  +     +          R  ++   H+      + L      + K  + 
Sbjct: 403 AADLYLDKLARQTGVTRESLKVTFVRERRKLQRAKNHQQAYQAPKSLPIDRPSEPKEEQA 462

Query: 480 PSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +  E        LL   I+          +     + +    KL  F        +   
Sbjct: 463 GTDLETRNPALDRLLYLFIHSDEARDYLLSQ--QFLFPDERYAKLAEFWLKYHQTHEGAE 520

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                  + E        +L   + +  + S   + +  ++    +           + +
Sbjct: 521 VTGFIDFIPE--------ELQGIIINMEMISMPPDYSKRELDDQLRALEKSK-----IDQ 567

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           Q  ++  Q+     K +      +   +  +  +
Sbjct: 568 QLNDLLNQLKDAQRKQDNSLELEIAQKVIALRRK 601


>gi|254556821|ref|YP_003063238.1| DNA primase DnaG [Lactobacillus plantarum JDM1]
 gi|254045748|gb|ACT62541.1| DNA primase DnaG [Lactobacillus plantarum JDM1]
          Length = 626

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 142/651 (21%), Positives = 268/651 (41%), Gaps = 50/651 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +   + I++ IGQYV   +   N      +  CPFH+E+TPSF  N+ K  
Sbjct: 4   RIPEEKVEQVRSAVNIADFIGQYVQLKKAGKNL-----FGLCPFHEERTPSFSVNEQKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           ++CFSC   G+  SF+  L   SF E+V ++A    + LP            K++ Q DL
Sbjct: 59  FHCFSCGRGGNVFSFIMDLENLSFPEAVVKVADFGHIDLPASYTAQSQPAAPKDQQQADL 118

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           ++L   +   + H L      +    YL ERG+D   I+ F +GYAP +   L +  ++ 
Sbjct: 119 LKLYADSAKMYQHILVNTELGEPALKYLHERGLDDETIKTFGIGYAPAN-QLLLDFFKEH 177

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235
               + + ++GL I+        DRF +R++FPI+ + G+VIAF GR L K     KYLN
Sbjct: 178 QTDYQLLRQSGLFIENQAGD-LRDRFVDRVLFPIKDASGRVIAFSGRILKKSPNEPKYLN 236

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LF+K   L+NF  A   ++              ++L EG+MDV++  ++G+QN V
Sbjct: 237 SPETKLFNKRSVLFNFDLARGPIR----------QQKSVVLFEGFMDVIAAYRSGIQNGV 286

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GT+LT+ Q+ +L +++  + +C+D D PG +A  +A+ L+  +      V  + +  
Sbjct: 287 ASMGTSLTDEQIYMLERVTDTLYVCYDSDMPGQKATDRALKLLGGNSRLNLGV--IQMPD 344

Query: 356 GEDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
           G DPD ++R  G+  F +              +    + +     ++      +   +  
Sbjct: 345 GMDPDEYLRAQGQEKFVQVFEDGKQTPTAFEMQYLKHDLNLQNTPDQLTYLQAVLQQLAQ 404

Query: 415 IKDQKLRYYYS-----------QAIRDRLQQLFQKYITEHSGYGRYWKK-NARHRDQKGP 462
           +     +  Y              ++ +L+ L  +      G      +           
Sbjct: 405 LSSSVEQDLYLNQLVAEFDLDKDDLKQQLRSLVGQQAVRRGGGHSDETQVAPPPAPAPLG 464

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
                           +    E  LL  L+N   +       +A   + ++  Q++  + 
Sbjct: 465 PPPATVDGSTNSGPLSRVEKAERLLLYRLLNDHDVWLRVM-AIAGFHFVHDSYQQILVYA 523

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            + F     F        + +     ++  L+             +      ++     +
Sbjct: 524 EAYFKTHNQFDLGNFTDFMTDSDLQPVVTSLE-----------FMDVANESSKEEIADLV 572

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +    + L  Q    + ++      G  +    L   L +++ Q  Q++ 
Sbjct: 573 NVIMNQQPLVEQINSKKAELTAAKQIGNRDLVQQLTLALIDLYRQQQQVQR 623


>gi|121997891|ref|YP_001002678.1| DNA primase [Halorhodospira halophila SL1]
 gi|121589296|gb|ABM61876.1| DNA primase [Halorhodospira halophila SL1]
          Length = 614

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 171/636 (26%), Positives = 283/636 (44%), Gaps = 49/636 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P +FI ++L    I  ++G+ V      +N     Y A CPFHDE+TPSF+ +  +  
Sbjct: 4   RIPDEFIDEVLQRTDIVAVVGERVPLRPGGSN-----YKARCPFHDERTPSFNVSPERQT 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   G  + FL       F E+++ LA   G+ +P       +       L R +
Sbjct: 59  YHCFGCGAHGTAIRFLMEHDRMEFREAIEELANRVGLEIP-DTGGARRPADEFAPLYRAM 117

Query: 122 EVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             A  FF  +L+N   ++    YL +RGI       F LG+AP    +L     ++    
Sbjct: 118 AHADQFFRDALRNHPARQSAVEYLRQRGISGEVAARFGLGFAPPGWDNLL----RQLNDP 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
              I AGL+I+      +YDRFR+R+ FPI   RG+V+AFG R +S+GE  KYLNSPET 
Sbjct: 174 RPAIRAGLVIE--RDQKTYDRFRDRITFPIHDRRGRVVAFGARVVSEGEP-KYLNSPETP 230

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG+ +Y  + AL   ++  R          +I+VEGYMDV++L Q G+   V++LGT
Sbjct: 231 IFHKGREVYGLYQALQAERRPGR----------LIVVEGYMDVIALTQQGIPGAVATLGT 280

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T  Q  LL + +  +VLCFDGDD G  AA +A++ +L  L     V  +LL  G DPD
Sbjct: 281 ATTAEQATLLLRSADELVLCFDGDDAGRSAALRAVENLLPVLQGDREVGVLLLPEGTDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R  G+ AFE  +  + P+++    R  E     T D RA L       +  +    +
Sbjct: 341 DLVRSEGREAFENRLATATPVIEFYLARLGEACDLTTVDGRARLLERASGSLRRLPRGVI 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R      + +  +   +    +    GR          Q   + R  ++SL +  +    
Sbjct: 401 RETLIGQLAELTR--TEPERIDRILEGRAETPRDDPAPQGRSAPRTPEASLQRTPV---- 454

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEEIH 538
                  +  L+  P +           R+ + +    +L   L      +       I 
Sbjct: 455 ----RHAIALLLQQPQLATHAGD---PDRFADRDTPGLELLQQLLELARTEPNMTTARIL 507

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           +R  +      L +L    R A            D +Q +Q AL +    +++  +++ +
Sbjct: 508 ERFRDTPHEAPLHRLAAWQRTA--------MAEGDHQQEFQDAL-MRIEEQIIHNEQKRL 558

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIES 633
            + + QV    +  ++   L+     + + + +++ 
Sbjct: 559 VRALDQVGQDDQTIDREQELLRQATRLQLLMDRLKR 594


>gi|307705134|ref|ZP_07642011.1| DNA primase [Streptococcus mitis SK597]
 gi|307621330|gb|EFO00390.1| DNA primase [Streptococcus mitis SK597]
          Length = 586

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 151/629 (24%), Positives = 262/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G  F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVPFMEAVQILGQRVGIEVEKPLYSEQKPASPHQSLYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F++G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFRIGLAPPERNYLYQRLSGQYRD-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
            +++GL     ++    D F NR++FP+ + RG+VIAF GR   K +S   KY NS  T 
Sbjct: 177 FLDSGLFYLS-DANQFVDTFHNRIMFPLTNDRGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSITA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P     Q ++   K     
Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQAQRQNRMEGISRP----TQITMPVTKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +D  E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFTFDTPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEITRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|301066554|ref|YP_003788577.1| DNA primase [Lactobacillus casei str. Zhang]
 gi|300438961|gb|ADK18727.1| DNA primase (bacterial type) [Lactobacillus casei str. Zhang]
          Length = 595

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 163/633 (25%), Positives = 268/633 (42%), Gaps = 41/633 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   +  +L  + I++ IGQYV   +   N      +  CPFH+E TPSF  N+ K  +
Sbjct: 2   IPEATVDKVLKAVNIADYIGQYVQLRKTGQNL-----FGLCPFHEEHTPSFSVNEPKQIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CFSC   G+   F+      +F E+V+++A  AG+PL V        +   +    +++
Sbjct: 57  HCFSCGRGGNVFKFVMDYDNATFPEAVKKVADFAGMPLDVQVGHAAPVDPEISKQQHILQ 116

Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
              D FHH L N  + +    YL +RG+    IE F+LGYAP+ R  L   L  +    +
Sbjct: 117 DTADLFHHILMNTEKGQTALDYLHKRGLTDDTIEAFQLGYAPEERNLLVAFLNNRKVDYQ 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
               +GL ++       +DRF +R++FP+  S GQVI F GR LSK ++  KYLNSPET 
Sbjct: 177 DQRASGLFVEDQEG-KLFDRFNDRVMFPLTDSHGQVIGFSGRILSKDKTQAKYLNSPETK 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF+K   L+N   A     +              IL EGYMDV++  QAGV+  ++S+GT
Sbjct: 236 LFNKRDVLFNLHRAKADFGRDGGP----------ILFEGYMDVIAAYQAGVKTGIASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ ++  LS R+ +C+DGD+PG +A  +A+ ++  H     + + V+L  G DPD
Sbjct: 286 SLTTEQVDIISHLSKRLTVCYDGDEPGQKAIERAVAMLADHPR--LQTDVVVLPDGMDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FIR  G  AF+  +   L     + +        N    +          I  I +   
Sbjct: 344 EFIRARGAEAFQAQVKSVLTPTAFILQFLARGVDMNNDQAKLTYLNAALKTIGKISNPVA 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y + + D                     + A  +    P            +   + 
Sbjct: 404 RAVYVKQLADTTGVPESALNQSL-----PAPQQAVPQQSSAPVSYQTAPVNQPVRPIDRY 458

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +  +  LL  + +   ++Q      A   +     Q L++       EQ          R
Sbjct: 459 TAAQRQLLYYVWHDDLVMQRLKN--AAFTFPAPHFQTLFTGWLDFLHEQPDGELAGFLDR 516

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +     +   +  QV         TEA I ++ Q    A  +         + + I++
Sbjct: 517 V-DPDLSGVAASVAMQVLPEA-----TEATIDELIQTITSASTV--------ERLQAIKQ 562

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            I +    G+ +K   L      +   + Q + 
Sbjct: 563 AITEAQRLGDKQKLGELTVQYVNLMKLLKQQQG 595


>gi|332288975|ref|YP_004419827.1| DNA primase [Gallibacterium anatis UMN179]
 gi|330431871|gb|AEC16930.1| DNA primase [Gallibacterium anatis UMN179]
          Length = 596

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 162/640 (25%), Positives = 289/640 (45%), Gaps = 74/640 (11%)

Query: 1   MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M    PR FI +LL    I ++I   V   +   N     Y ACCPFH+EKTPSF  +  
Sbjct: 1   MKGLIPRTFIDELLARTNIVDIINSRVKLKKAGQN-----YQACCPFHNEKTPSFSVSPK 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEK 112
           K FY+CF C   G+ ++FL       F+E+++ LA++ GV +P  +   +         +
Sbjct: 56  KQFYHCFGCGAHGNVITFLMEYDKMDFVEAIEELASLQGVEVPREESNGQYNTNNSANYR 115

Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172
            + DL +L+     F+   L  +   +   YL +RG+ +  I+ F +G++ ++   L   
Sbjct: 116 SKRDLHQLMHDIAQFYQQQLTQSLPAQA--YLQQRGLSAEIIQRFAIGFSTNTNSVLNHF 173

Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
            +     ++ +    +          YDRFR R++FPIR  RG+ IAFGGR L   E  K
Sbjct: 174 GKTAEERQKLVDTGMVTKSDYG--NFYDRFRQRIMFPIRDRRGRTIAFGGRVL-GDEKPK 230

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPE   +HKG  LY  + AL           + ++  ++++VEGYMDV++L Q GV 
Sbjct: 231 YLNSPEMATYHKGNELYGLYEALQ----------QNDNPEYLLIVEGYMDVVALAQFGVT 280

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           N V+SLGTA T  Q+++ ++ + +I+ C+DGD+ G  AA++A++  L HL  G ++ F+ 
Sbjct: 281 NAVASLGTATTGEQIQIAFRATEQIICCYDGDNAGRSAAWRALENALPHLYDGRQLKFIF 340

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L   EDPD+FIR  GK  FE+ +  + P+ D L++        +  D R++L       I
Sbjct: 341 LPDNEDPDTFIRQIGKAQFEQFLNMAQPMSDFLFQHLLAQVDLSNKDGRSKLAALAVPLI 400

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           N +  + LR Y    +  +L  +    + +         K                    
Sbjct: 401 NQVPGETLRLYLRNTLGQKLGIVDSIQLEKILPALISEHK-------------------A 441

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL--------QKLWSFLFS 524
           K K  +  S     L+  L+ +P +  +   ++  I   N ++          L+  ++ 
Sbjct: 442 KEKEERLRSTPMRLLIALLVQNPELADK---QITRILLSNPQVLYDLNLPGLALFLEIYQ 498

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
               +      ++ +    +   ++L++L                   ++   +   L  
Sbjct: 499 ICANKSGITTGQLLEFWRGKKEQKILEKLAMWDHLIK---------DDNIEATFYGNLK- 548

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           +   +++ ++ E ++ +    +   + +K       L E+
Sbjct: 549 HLHSKVMEKRIETLKAKDRTDSLSLDEKK------ELIEL 582


>gi|149371560|ref|ZP_01890976.1| DNA primase [unidentified eubacterium SCB49]
 gi|149355187|gb|EDM43747.1| DNA primase [unidentified eubacterium SCB49]
          Length = 653

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 159/662 (24%), Positives = 262/662 (39%), Gaps = 60/662 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  I ++     +  +IG YV   +  +N     +    PF DE++PSF  +  K  +
Sbjct: 2   ISRTTIDNVFEAARVEEVIGDYVQLKKSGSN-----FKGLSPFTDERSPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA   G+ +       E+K     +  L  +
Sbjct: 57  KDFSSGKGGNVVAFLMEHEHFTYPEAIKYLAKKYGIEIEETVQTDEQKVAADERESLYLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A D FHH+L N    +     Y  ERG     I+ F+LGY+ D   +   H  +KG+
Sbjct: 117 SEFAKDHFHHNLLNTDLGKAIGLSYFKERGFTDETIKEFQLGYSIDDWDAFTSHAIKKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
             + + + GL I        +DRF+ R++FPI+S  G+ + FGGR L   +   KYLNSP
Sbjct: 177 KLDFLEKTGLSIV--KGEKQFDRFKGRVMFPIQSMSGRTLGFGGRILKTDKKAAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  + A   + K               LVEGY DV+   Q GV+NVVSS
Sbjct: 235 ESDIYHKSKVLYGIYQAKQAIAK----------EDNCFLVEGYTDVIQFYQRGVKNVVSS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ +L+  I + FDGD  GLRA+ + +DL    L  G  V       GE
Sbjct: 285 SGTALTSDQIRLINRLTKNITVLFDGDAAGLRASLRGVDL---ILEQGMNVRICTFPEGE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF +          + E+               + N P ++AE    +   I  I D
Sbjct: 342 DPDSFAKNNTLEDLLLFLDENAKDFISFKASLLATDAKNDPLKKAETIRDMVESIAKIPD 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ-RLMQSSLVKGKL 476
              R  Y Q     +    +      +      K+    + +  P    ++ S   + K 
Sbjct: 402 VIKREVYIQECARIMDISEEVLFNTLAQILNKGKREDTRKKEDAPKPFDIVASPKKQSKK 461

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQEL------------------------------A 506
                  E  ++  L+ +   ++E    L                               
Sbjct: 462 VDVLWELERKIIELLLLYGDEVEEFEDLLLDTDETGAITLKPEKVNAKVFEKIFLDLQDD 521

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           ++ + N+E + ++  +     + +         +L       +   L    +        
Sbjct: 522 EVEFANDEFKDVYYDIIQHLNQNQEVQLTSFLSQLEPEKSSAISSILMEDEKYVLHDWER 581

Query: 567 TEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
            E  +    QG  Q +    L  R  L+S++  E+   I +  A  +  +    I     
Sbjct: 582 MEIYVKKKEQGVSQLVSETILNLRRHLISQKITEL-STIVKENAATDTTEYLQSIMDYQS 640

Query: 624 VH 625
           + 
Sbjct: 641 LK 642


>gi|332670810|ref|YP_004453818.1| DNA primase [Cellulomonas fimi ATCC 484]
 gi|332339848|gb|AEE46431.1| DNA primase [Cellulomonas fimi ATCC 484]
          Length = 672

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 146/687 (21%), Positives = 257/687 (37%), Gaps = 73/687 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              R+ ++ +     I  ++G +V           G     CPFHDE++PSFH     G 
Sbjct: 4   RIRREDVEAVRERARIEEIVGAHVSLRPAG----VGSMKGLCPFHDERSPSFHVRPQVGR 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118
           Y+CF C   GD ++F+  + G +F E+V+ LA   G+ L   +    +       +  L+
Sbjct: 60  YHCFGCGEGGDVIAFVMKVDGLAFAEAVEYLAGRVGIQLRYEEGGAPRPGDEPGRRRRLL 119

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              +VA +F+   L          +L ERG D  A E F +G+AP     L  HLR +GF
Sbjct: 120 DAHKVAEEFYREQLTTPGAAAGRAFLAERGFDRSAAETFGVGFAPQGWDGLLRHLRGRGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237
           +E +++ +GL+  G      YDRFR RL++PIR   G+ + FG R L    +  KYLN+P
Sbjct: 180 TEAELVASGLVSQGQR--GVYDRFRGRLVWPIREVTGETVGFGARRLFDEDQGPKYLNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET L+ K + LY    A   +Q+  R          +++VEGY DV+++  +GV   V++
Sbjct: 238 ETPLYRKSQVLYGIDLAKRDMQREKR----------VVVVEGYTDVMAMHLSGVGTAVAT 287

Query: 298 LGTALTEYQLRLLWK------------------LSPRIVLCFDGDDPGLRAAYKAIDLVL 339
            GTA      R++ +                  +   I+  FDGD  G +AA +A     
Sbjct: 288 CGTAFGSDHARIVRRLVGDSGSTGGVQLASGASVGGEIIFTFDGDAAGQKAALRAFGEDQ 347

Query: 340 CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399
                       +   G DP    +  G  A   L+    PL + + +   E+    T +
Sbjct: 348 SFSAQ---TFVAVERSGLDPCELRQAKGPDAVRALVAGRQPLYEFVIRSTLESYDLRTAE 404

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
            R          +  I+D  LR  Y++ +   L    Q  +       R   +    RD+
Sbjct: 405 GRVGALRAAAPVVAGIRDAALRPEYTRLLAGWLGIDDQDAVRRAVAGARSTGRPGGGRDE 464

Query: 460 KGPSQR------------------------------LMQSSLVKGKLSKKPSLREAALLL 489
             P +R                              +  + +         +  E   L 
Sbjct: 465 GRPDERRGRPDDRRGGRADGRPDDRGAARGGPDVVHVPVARMPVPDRRDPVAQVERTALE 524

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            ++  P  + + + +LA   +     + +   + +           +            +
Sbjct: 525 VVLQLPEHVPDHFDDLAADAFAAPAYRAVHEAVRAAGGVAAARAAVQAAPGASTAWVDAV 584

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQ--GYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           ++Q    VR      A             GY + + L       +R   ++  ++ ++  
Sbjct: 585 VEQAAEPVRALVTELAVAPLPEDRPESLPGYVRDVVLRLVEIGYTRHIADLRGRLQRMDP 644

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQ 634
             +A       + L  +  +   +   
Sbjct: 645 GADAAGYQAAFAELVALEGRRRTLRES 671


>gi|319762044|ref|YP_004125981.1| DNA primase [Alicycliphilus denitrificans BC]
 gi|330826138|ref|YP_004389441.1| DNA primase [Alicycliphilus denitrificans K601]
 gi|317116605|gb|ADU99093.1| DNA primase [Alicycliphilus denitrificans BC]
 gi|329311510|gb|AEB85925.1| DNA primase [Alicycliphilus denitrificans K601]
          Length = 641

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 171/675 (25%), Positives = 293/675 (43%), Gaps = 86/675 (12%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P+ FI++LL  + + +++G+YV   +   N     +   CPFH EK+PSF  + SK 
Sbjct: 1   MSIPQSFIQELLARVDVVDIVGRYVQLKKSGAN-----FMGLCPFHGEKSPSFSVSPSKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-------KEKI 113
           F++CF C   G+ + FL    G  F E+VQ LA   G+ +P  +    +       + + 
Sbjct: 56  FFHCFGCGKNGNAIGFLMDHAGMGFREAVQDLAQQVGMQVPDDENTSPQDRERAAAQRQK 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           Q  L  ++E A + +   L+ +   R   Y   RG+     + + LGYAP+   +L    
Sbjct: 116 QATLTEVLEKAGESWRRHLRES--PRAIQYFKGRGVSGQVAKRYGLGYAPEGWRNLASVF 173

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
               +    + E+GL+I G++    YDRFR+R++FPIR+ +G+ I +GGR L   +  KY
Sbjct: 174 --PEYDSPLLEESGLVIVGEDDGKRYDRFRDRVMFPIRNVKGECIGYGGRVL-GDDKPKY 230

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +FHKG+ LY  + A   ++             ++++ EGYMDV++L Q G  N
Sbjct: 231 LNSPETPVFHKGRELYGLYEARGAIR----------EMGYVLVAEGYMDVVALAQLGFPN 280

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V++LGTA T   +  L++ +  +V  FDGD  G RAA KA+D  L +      + F+ L
Sbjct: 281 AVATLGTACTPDHVHKLFRFTDVVVFSFDGDAAGRRAARKALDGALPYASDTRSIKFLFL 340

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPDSFIR +G  AF + + +++PL   L +   E     T + RA +  + +   +
Sbjct: 341 PPEHDPDSFIRAHGPEAFARHVGDAMPLSRFLLESAREGCDLGTAEGRAHMLANARPLWS 400

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEH------------------------------ 443
            + D  L+      +   L QL  K + E                               
Sbjct: 401 QLPDGALKRQMLAEL-GELGQLPAKDLAELWAQEGPRAAPAAAPEGGDPFADEPPWHPQP 459

Query: 444 ------SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
                     R W+K+A  R ++ P+ R  Q  L +   + +       LL  +      
Sbjct: 460 PGPWQGEPARRPWRKDAGGRWRREPA-RPAQPPLPRRPAASRIDHAARLLLSHM----QF 514

Query: 498 LQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           L+    E         E    L+++L     E        + + L       L +++   
Sbjct: 515 LEGLSHEDHAALCAQPEPHGPLFAWLEGQLHEHGPQPWAVLREALRGHDCEPLAERVMTG 574

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                   A TE +  ++    +  L          RQ++E+  ++ +  A         
Sbjct: 575 S------HAQTEGDEAELHAELRGLLDRMLIEEF-KRQQQELVPRVTRDPAA-------- 619

Query: 617 LISILHEVHIQIHQI 631
            ++    +  ++  +
Sbjct: 620 -LAQYQALEQRLKGL 633


>gi|148239409|ref|YP_001224796.1| DNA primase [Synechococcus sp. WH 7803]
 gi|147847948|emb|CAK23499.1| DNA primase [Synechococcus sp. WH 7803]
          Length = 693

 Score =  348 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 172/677 (25%), Positives = 294/677 (43%), Gaps = 69/677 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ +     I +++G++V   ++       ++   CPFHD+  PS   + +K F
Sbjct: 5   RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           YYCFSC   G+ + FL      SF E V  LA    +P+  VD   +++ K     +  L
Sbjct: 60  YYCFSCGAGGNSIKFLMEFQRQSFSEVVLDLARRYQLPVETVDGPQQERLKQQLSRRDTL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            R++ +A  +F   LK A       Y  D+RG+    +E F+LGYAPD    L +HL+Q 
Sbjct: 120 HRVLALAAGWFRSQLKVASGAEALRYLQDKRGLSDATLEQFELGYAPDQWDGLLKHLQQV 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G   + +  AGL++        YDRFR+R++ PI+  +G+VI FGGR+L   E  KYLN
Sbjct: 180 EGLDPQHLEAAGLVVPRKGGNGFYDRFRHRVMVPIKDRQGRVIGFGGRSLDGTEP-KYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK+L+    A + ++K  R           ++VEGY DV++L  AGV N V
Sbjct: 239 SPETEVFEKGKHLFGLDRAASAIRKDDRA----------VVVEGYFDVIALHAAGVTNAV 288

Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352
           +SLGTAL+  Q+  L +     RIVL FD D  G+RAA +AI  V    + G   +  + 
Sbjct: 289 ASLGTALSSQQITQLCRCCDGKRIVLNFDADGAGVRAANRAIGEVEQLALQGQLELRVLH 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+DPD F++ +G   +  L+ ++   +D   ++  E R  +  D+       L   +
Sbjct: 349 LPSGKDPDEFLKDHGAGDYRALLDQAPLWLDWQIEQVLEGRDLSKADQFQRSVSALVELL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    +R +Y Q + +RL     +   +     R   +  R   +    +        
Sbjct: 409 GKLPQSAIRTHYIQQVSERLSGGQGRLALQLEEDLRQQVQGQRWHGRSARHE-------- 460

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLW---------- 519
           K   + +    EA +L   ++ P+      QEL       +     + LW          
Sbjct: 461 KSGEASQRERCEAEILRLYLHCPSYRGAIRQELRKRELEDFALQHHRLLWSCLTELEEGN 520

Query: 520 ------SFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEAN 570
                   +             ++ + L ++       L+ +L   +    L        
Sbjct: 521 LGSVRLEAISRGDDRGDELADLDLPRLLTDQLLLENSTLVTRLTPLLEPGELQKVALSRP 580

Query: 571 IVDVR--QGYQQALALYKRFRLLS-----RQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
           +  +R      +     KR R L      ++ + +E+ IA +  +   ++         +
Sbjct: 581 MEQLRGTAAMLERQKSNKRCRHLLEAWAGQRLQTLERCIAVLIDEEREQQQPQT----ED 636

Query: 624 VHIQIHQI---ESQEAM 637
           +  +I  +    + EA+
Sbjct: 637 MEQRIQAMFDDLNAEAL 653


>gi|300743946|ref|ZP_07072966.1| DNA primase [Rothia dentocariosa M567]
 gi|300380307|gb|EFJ76870.1| DNA primase [Rothia dentocariosa M567]
          Length = 676

 Score =  348 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 155/694 (22%), Positives = 279/694 (40%), Gaps = 90/694 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++     I  ++  YV           G Y   CPFHDE+TPSF+     G Y
Sbjct: 5   IRKEDIDEVRARTDIREIVEGYVTLKGAG----IGAYKGLCPFHDERTPSFNVRPQMGTY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   GD  SF+ A+    F E+V+RLAA  G  L     +P+   +  ++  L+  
Sbjct: 61  HCFGCGESGDVYSFVMAMEHTGFTETVERLAARIGYTLHYEGGNPRDRYEASLRRRLLDA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            ++  +FF  SL +A       +L  RG D  A + F +GYAP    +L +HLR +GF++
Sbjct: 121 HKITAEFFERSLYSANAGEAQRFLGARGFDPAATKTFGVGYAPRGWDNLLKHLRSQGFTD 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
           E++   G+  +G+     YDRFR R+I+PIR+  G+ I FG R L   +   KYLN+PET
Sbjct: 181 EELRATGMFSEGNR--GLYDRFRGRIIWPIRTVAGETIGFGARRLFDDDQGPKYLNTPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            L+ K + LY    A   + K          +  +++VEGY DV++   AG++  V++ G
Sbjct: 239 PLYKKSQVLYGIDLAKREMTK----------TKQVVIVEGYTDVMAAHLAGIKTAVATCG 288

Query: 300 TALTEYQLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           TA     ++++ ++         I+  FDGD  G +AA  A +     +    +    + 
Sbjct: 289 TAFGAGHIKVVRRMITDDGSGGEIIFTFDGDAAGQKAALAAFEEDQRFVA---QTYVAVA 345

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  A   LI    PL + +     +     T + R      +   I 
Sbjct: 346 QEGMDPCDLRLHRGDAAVRSLIASRRPLFEFVIDTTLKRFDLTTLEGRVLAMRAIAPIIA 405

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR------------------ 455
            I+D+ LR  Y + +  +L    ++     +   R+ ++  R                  
Sbjct: 406 GIRDRDLRPAYMRKVSGQLGMELEEIQRAVAYAQRHPQQKKRYEPVAQQSQTPRYEQVPG 465

Query: 456 --------------HRDQKGPSQRLMQSSLV-----------------------KGKLSK 478
                         +     P+ +  + S                             + 
Sbjct: 466 YGQQDLQNYSAQPWNASAGNPAPQTERPSNPGNTMPDTHSDTSVANTGGGEPILAPDPAD 525

Query: 479 KPSLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +  E A L   + HP ++   Q+QE A + +     +++   +             E 
Sbjct: 526 PVARLEKAALEIALQHPHLMSVSQWQEFARVEFRYRMHREISRGIIHAASTVAPAAGVEW 585

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +      E+   +          +A   A+   + +  +  L        ++RQK +
Sbjct: 586 LNVVRSGTIAEVHPAIAELSV-----AALPIAHEEHLPRFIEGTLNSLF-IHQITRQKSD 639

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +  ++ Q+++  ++E+ A +   L E+ ++   +
Sbjct: 640 LMMRLEQLSSASDSEEYAHVQRELLELEMRRRTL 673


>gi|310827636|ref|YP_003959993.1| DNA primase [Eubacterium limosum KIST612]
 gi|308739370|gb|ADO37030.1| DNA primase [Eubacterium limosum KIST612]
          Length = 591

 Score =  348 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 157/630 (24%), Positives = 286/630 (45%), Gaps = 55/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            Y  + I  +L    I +++ +YV   +  +      Y   CPFH+EKT SF  +  K  
Sbjct: 14  RYSEEVINQVLQANDIVDVVSEYVTLKKAGS-----SYKGKCPFHNEKTASFTVSPDKQL 68

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C V G+ + F+ A+    F+++++ LA  A + LP      +  ++ + +  L  
Sbjct: 69  YHCFGCGVGGNVIGFVMAIENLPFVDALKFLARRAHIILPENGSSAEDSERYRKKERLYE 128

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L     ++++  LK  R+ +  YYL  R I    I+ + LG APD   +    LRQKG++
Sbjct: 129 LHRELANYYYLCLKKNRNAQ--YYLAGRKITPETIKAYGLGLAPDGWQNALGFLRQKGYT 186

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           +++++++GL +    +   YDRFRNR++FPI ++ G++I FGGR +++ +   KYLNSPE
Sbjct: 187 DQEMLDSGL-VMRSENGRMYDRFRNRIMFPILNATGRIIGFGGRRINEDDHGPKYLNSPE 245

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F KG  L+N   A + +               +++VEGYMDV+SL Q GV+N V++L
Sbjct: 246 TMIFSKGTELFNMNHAKSSI-----------VGGQMLIVEGYMDVISLYQYGVRNTVAAL 294

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T Y   LL +    +VLCFDGD  G  A  KAI +          V  + L   +D
Sbjct: 295 GTAFTAYHAALLGRYVGEVVLCFDGDAAGESATQKAIAI---LKNTPLNVKILRLPIEDD 351

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD++I+ +GK AFEK I E++ +V+       +    +  D R +        +  + D+
Sbjct: 352 PDTYIQKHGKDAFEKKITEAITIVEYEIGLLRKKFDLSQTDGRIKYINQAIAVLRQLSDE 411

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                YS+ +        +    E            R +      + + +      K+ K
Sbjct: 412 VQIDLYSKRLARETGIDLKVIRREV----------YRKKPVDLTEEDVGEKIDYWQKMPK 461

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +   L   +  P + +     L    +     ++L+  +     + +   P  + 
Sbjct: 462 AYEEAQILFLRKGMMEPDVFKS--GRLRAEHFSPGFFRELYELITGLLEKGEQLSPAALM 519

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               +         +++    + +    T      + +  +  +  +        + +EI
Sbjct: 520 NHFED---------VEQVKPVSAILMDDTPIESAKLEECVKTIMHFH--------RLKEI 562

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           E +I Q  +K   E+ A+L+  +  +  ++
Sbjct: 563 E-RIKQEISKASEEEAAVLMDKMITLKKEM 591


>gi|78212706|ref|YP_381485.1| DNA primase [Synechococcus sp. CC9605]
 gi|78197165|gb|ABB34930.1| DNA primase [Synechococcus sp. CC9605]
          Length = 682

 Score =  348 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 163/638 (25%), Positives = 280/638 (43%), Gaps = 57/638 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ +     I +++G++V   ++       ++   CPFHD+  PS   + +K F
Sbjct: 5   RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           YYCFSC   G+ + FL      SF + V  LA    +P+  VD   +++ +     +  L
Sbjct: 60  YYCFSCGAGGNSIKFLMEFQRQSFSDVVLDLARRYQLPIETVDGPQQERLRQQLSRRDKL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            R + +A  +F   L          YL E R +     E F+LGYAPD    L +HL+Q 
Sbjct: 120 QRALALAAGWFRSQLMAPAGAEALKYLSEARELSPATQETFQLGYAPDQWDGLLKHLQQV 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G + E +  AGL++        YDRFR+R++ PI   +G+VI FGGR+L   E  KYLN
Sbjct: 180 EGLAPELLEAAGLVVPRKGGNGFYDRFRHRVMVPIHDRQGRVIGFGGRSLDGSEP-KYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK+L+    A N ++K  R           ++VEGY DV++L  AG+ N V
Sbjct: 239 SPETEVFEKGKHLFGLDKASNAIRKDDRA----------VVVEGYFDVIALHAAGITNAV 288

Query: 296 SSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVL 352
           +SLGTAL+  Q+  L +   S RIVL FD D  G+RAA +AI ++    +     +  + 
Sbjct: 289 ASLGTALSSQQITQLCRVSDSKRIVLNFDADGAGVRAANRAIGEVEQLAMQGQLELRVLH 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+DPD F++  G   +  L+ ++   +D   ++    R  +  D+  +    L   +
Sbjct: 349 LPSGKDPDEFLKQNGAGDYRALLDQAPLWLDWQIEQVLAERDLSRADQFQQAVTALVGLL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    +R +Y Q + +RL     +   +     R   K  R   +    ++  +S   
Sbjct: 409 GKLPQSAVRTHYLQRVAERLSGGQGRLALQLEDDLRQQVKGQRWHGRSSRHEQPGESG-- 466

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFV-- 527
                 +    EA LL   ++ P       QEL       +     + LW+ +       
Sbjct: 467 ------QRERCEADLLRLYLHCPRHRATIRQELRKRELEDFAIPHHRHLWAAITDLEETN 520

Query: 528 --------------EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
                         + +     ++ + L ++   E    L  ++             + +
Sbjct: 521 LGEGRMESISRCDDDGEGLDLIDLPRLLTDQLLLE-SSALVSRLTPLLEPGELQRVALAE 579

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIE----KQIAQVTA 607
             +  +   AL +R + L R +  +E    +++  + +
Sbjct: 580 PLEQLRGIAALLERQKSLKRCRHLLEAWGGQRLQTLES 617


>gi|221632448|ref|YP_002521669.1| DNA primase [Thermomicrobium roseum DSM 5159]
 gi|221156529|gb|ACM05656.1| DNA primase [Thermomicrobium roseum DSM 5159]
          Length = 616

 Score =  348 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 166/642 (25%), Positives = 278/642 (43%), Gaps = 67/642 (10%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           R  ++ +   I I +LIG Y+   +   N     + A CPFH EKTPSF+       +YC
Sbjct: 3   RQDVERVREAIDIVDLIGGYIQLRKAGKN-----FKALCPFHQEKTPSFYVFPETQSFYC 57

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C   GD +SFL  +    F ++++RLA  AG+ L    P+   +++ +  L  L  +A
Sbjct: 58  FGCGASGDAISFLMRIEQLDFRDALERLAERAGITLSPPRPEERAEDEQRRRLAELNRLA 117

Query: 125 TDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
             +F H L   +  +    YL+ RGID    E F LGYAPD+  +L  +L Q G   E++
Sbjct: 118 AAWFAHVLWGTSFGEAARSYLERRGIDRPTAERFGLGYAPDAPSALARYLSQHGAGPEEL 177

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
           + AGL++  D+  +  DRFRNRLIFPIR   G ++ FGGRTL      KYLNSP+T LF 
Sbjct: 178 VTAGLVVRRDDG-SLVDRFRNRLIFPIRDRHGTILGFGGRTL-GEAQPKYLNSPQTPLFD 235

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           KG  LY    A   ++               I+VEGY+D ++  Q G  N V+SLGTALT
Sbjct: 236 KGSVLYAIDLAEESIR----------QQRTAIVVEGYLDAITAHQFGYSNTVASLGTALT 285

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG------------------ 345
           E Q R L +L+ RI+L  D D  G +A  + ++L+   L  G                  
Sbjct: 286 ERQGRHLRRLAERILLALDADVAGRQATLRGLELLRHALAEGERAVVDPRQLIRFERTLD 345

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             +  V+L  G DPD  IR      +++ +  ++PLVD         +    P     L 
Sbjct: 346 VELAVVVLPEGLDPDDLIRQDRT-RWDEALAHAVPLVDYYLDVLLGEQPPANPRAATALL 404

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
             +   +  + D      Y++++  RL+   +      +   R   +    +       R
Sbjct: 405 QRIAPLLLELGDLVQVDLYTRSVAARLRLPEETVRRLLASLRRQPTREPSPKTTAAAILR 464

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
            + +              E   +  L+ +P        E+      +   ++L S L + 
Sbjct: 465 PLST--------------EQQFVGLLLRYPEAAAHLVGEIDLESITDARYRELVSLLLA- 509

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
               +      + + L +      + QL ++      ++   +  +   RQ  ++A    
Sbjct: 510 ---GQPLDDAALAEDLRDD-----IGQLRQR------FATQPDLPVPLARQAIREAFRRL 555

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +R R    +   +  ++     +G+ ++    + ++  +  +
Sbjct: 556 RRERH-DERLRSLLSEVRDAEERGDRDELRRALELIEALKQR 596


>gi|256825036|ref|YP_003148996.1| DNA primase [Kytococcus sedentarius DSM 20547]
 gi|256688429|gb|ACV06231.1| DNA primase [Kytococcus sedentarius DSM 20547]
          Length = 652

 Score =  348 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 141/671 (21%), Positives = 264/671 (39%), Gaps = 63/671 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I+ +     + +++ ++V           G     CPFHDEKTPSF    + G +
Sbjct: 5   IRSEDIQAVKERTSLEDVVREHVTLRTAG----VGSLKGLCPFHDEKTPSFQVRPAVGHW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIR 119
           +CF C   GD + F+  +   SF E+V+RLA   G+ L   + K  ++E     +  L+ 
Sbjct: 61  HCFGCGEGGDVIEFVQKIDHLSFAEAVERLAGQLGMELRYEEGKGPQREGGLGRRARLVE 120

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
               A  F+H  L  AR+ R    +L  +G  S     F +G++P +  +L EHLR  GF
Sbjct: 121 AHRAAEQFYHQQLLGAREARPGRDFLRAKGFGSGEAAHFGVGFSPRTGSALYEHLRAGGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           ++E+++ AGL          YDRFR R+++PIR   G  + FG R +   + +  KYLN+
Sbjct: 181 TDEELLTAGLAGRSSRGM--YDRFRGRVMWPIRDITGDTVGFGARRIFDDDRIAAKYLNT 238

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
            ET ++ K + LY    A   +                ++VEGY DV++   +GV+  V+
Sbjct: 239 SETPIYTKNQVLYGLDLAKKAMA----------QQRTAVVVEGYTDVMAAHLSGVEVAVA 288

Query: 297 SLGTALTEYQLRLLWKL--------SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           + GTA     +++L ++          R+V  FDGD  G +AA KA +         ++ 
Sbjct: 289 TCGTAFGAEHIKVLRRILRDEANQAPARVVFTFDGDAAGQKAAMKAYETDQAWA---SQS 345

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
              +   G DP+      G  A   LI +++P+ +   +   +     TP+ R       
Sbjct: 346 YVAVAPDGLDPNDLRTQRGSQAVRALIEDAVPMFEFAVRTSIDRYDLATPEGRVGAMRAA 405

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP------ 462
              I  I+D+ L+  Y++ +   +         E +   R          +         
Sbjct: 406 APIIARIRDRSLQPEYTRTVAGWIGVEVGDLSREVAAARRSGAGQPSAPGRPAAPPPVGG 465

Query: 463 ----------------SQRLMQSSLVKGKLSKKPSLREAALLLTLINHP-AILQEQYQEL 505
                           ++      L            E  LL  ++ +P ++   ++  L
Sbjct: 466 GSGRAAEGAGDAPGELAEPAGPPPLPPVDPRNPDHAAERQLLQVVLQYPGSVTGTEHSSL 525

Query: 506 ADIRYDNNELQKLWSFLFSD--FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
           +   +    L  + + +                  Q++ +        ++   V +  + 
Sbjct: 526 SATAFTAPALALVHAAITEAGGIERAVTLSHGAWVQQVRDAADP----RVHDLVGELSVA 581

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
                 +      GY + L    R   L+R   +    + ++  +G+AE++  +   L  
Sbjct: 582 GLPVRMSNGQPPAGYVEGLVARLRIVELNRLIADALGALQRL-GEGDAERSREIGVRLQG 640

Query: 624 VHIQIHQIESQ 634
              ++  + + 
Sbjct: 641 WQRELQHLRAS 651


>gi|158320312|ref|YP_001512819.1| DNA primase [Alkaliphilus oremlandii OhILAs]
 gi|158140511|gb|ABW18823.1| DNA primase [Alkaliphilus oremlandii OhILAs]
          Length = 604

 Score =  348 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 168/639 (26%), Positives = 287/639 (44%), Gaps = 44/639 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           +P + I ++  +  I ++I +Y+      +      + A CPFH E TPSF  N  K  Y
Sbjct: 5   FPEELINEVKDNNEIIDVISEYIQVKSSGS-----SHKALCPFHSENTPSFVINREKQIY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD--LIRL 120
            CF C   GD + F+  +    FIESV+ LA  A + +   +   E K +I+       +
Sbjct: 60  KCFGCGEGGDVVRFIMKIENLDFIESVKLLAKRANIEIKSTESSEEFKAQIKEKNLFYEI 119

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
                 +F+H+L          YL  RGI    +  F LGYA +S   L  +L+++G+  
Sbjct: 120 NRKVGLYFYHNL-TKIPNPALEYLTNRGITPKTLASFGLGYANNSWDDLVLYLQKEGYQL 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E I + GL I  +     YD FRNR++FPI + RG+V+ FGGR L      KYLNSPET 
Sbjct: 179 EDIQKCGL-IRANKQNGYYDYFRNRIMFPIFNIRGEVVGFGGRVL-DDALPKYLNSPETK 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY    A   +           S+  IILVEGYMDV++L QAG +N V+SLGT
Sbjct: 237 IFNKSNTLYGLNFARKNI-----------SNGQIILVEGYMDVIALHQAGFKNAVASLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT+Y  +LL K    I+LCFDGD  G++A  +++D+         +   ++L +G+DPD
Sbjct: 286 SLTKYHGQLLKKYCDEIILCFDGDTAGIKATMRSVDI---LTEEKCQFRIMMLPQGKDPD 342

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FI+ +G   F + I +++ L D          + NT  +  +L   L   I  IK    
Sbjct: 343 DFIKLHGSDKFREQINKAMSLTDYKILLAKNEHANNTIYDNMKLAKRLSEIIRDIKSPIE 402

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLSKK 479
           +  Y +          +    E  G       N  +       +R  +   LV     K 
Sbjct: 403 QEAYIEKASAETGISKEAIKKEIYGQNPKLSNNITNTKYSSNYKRDNKYIELVPLVEQKG 462

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             + E  L+  ++     ++     ++   +     +++ ++L                 
Sbjct: 463 HIVAEQQLIKFMLTDNTTIKYILDSISIDDFSVLAHREIVNYL----------------- 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS--RQKEE 597
            + +      +++L    ++       T  + +D+     + +   K+++LL   ++ E+
Sbjct: 506 SVHKNIAENQIEELFSDFKEDINKIFETNIDHIDLNSTLNKYVINLKKYKLLYDIKKLEK 565

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +  I + +   + E  + L++I  E+  +  Q++   A
Sbjct: 566 EQNAIIKDSNLTKEEVESKLLTIGMEIMKKNVQLQKLRA 604


>gi|225025102|ref|ZP_03714294.1| hypothetical protein EIKCOROL_01994 [Eikenella corrodens ATCC
           23834]
 gi|224942063|gb|EEG23272.1| hypothetical protein EIKCOROL_01994 [Eikenella corrodens ATCC
           23834]
          Length = 596

 Score =  348 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 174/623 (27%), Positives = 284/623 (45%), Gaps = 57/623 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P +FI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + SK FY
Sbjct: 2   IPSEFIDELLAKTDIVDIIDESVPLKKGGAN-----YMACCPFHKEKTPSFSVSPSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-----VVDPKIEKKEKIQ-TD 116
           +CF C   G  + F+    G  F E+VQ LA  AG+ +P        P+   + K +   
Sbjct: 57  HCFGCGAHGTAIGFVMEYQGLGFTEAVQYLADRAGMVVPQQKGRQESPEARARRKQRQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A  F+   L  A ++    YL +RG+       + LGYAPDS   L +     
Sbjct: 117 LEETTAQAAAFYTREL--AANETAKGYLKKRGLSDEVAAHYGLGYAPDSWRPLAQSFA-- 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +  E ++ +G++I+ D S   YDRFR+R++FPIR+S GQVI FGGR L      KYLNS
Sbjct: 173 PYPSEALVNSGMVIEKDGSH--YDRFRHRIMFPIRNSSGQVIGFGGRVL-DDSKPKYLNS 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  + A   ++++ R          I++VEGYMDV++L Q G+   V+
Sbjct: 230 PDTPLFDKGKNLYGLYEARAAVKEAGR----------ILVVEGYMDVVALAQFGIGYCVA 279

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGT+ T   +++L + +  I  CFDGD  G +AA++A++  L  L  G  ++F+ L  G
Sbjct: 280 ALGTSTTAEHVKILMRQTDSIYFCFDGDAAGRKAAWRALENALPQLKDGKSLHFLFLPEG 339

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS++R +G+  FE  L+ +S PL    W   T      + + +AEL       +  I
Sbjct: 340 HDPDSYVREHGRERFEDMLLHQSKPLSAYFWDALTAKLDLRSQEGKAELVKTATPLLTQI 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L +   Q + + +                      +       + R  Q       
Sbjct: 400 TAPALAFLLKQELSNLVGIDPANLAHLMGQEVPKRHVAQQRYTLPRQTFRQPQ------- 452

Query: 476 LSKKPSLREAALLLTLINHPAI-----LQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
                SL +  +   LIN P       L +  +  AD+   +     +          + 
Sbjct: 453 ---MLSLAQQQIRRLLIN-PQWATYIDLPDHLELDADLVCLSVMAAHVRR-------SRS 501

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 + + +    +   + ++ +   D+  +    E++ ++ + G Q+ +   K    
Sbjct: 502 PLSSAGLMEAMRNTPYYGNISRIMQSGTDSAHFEGDGESDALNFQSGMQKLMNALK---- 557

Query: 591 LSRQKEEIEKQIAQVTAKGEAEK 613
            ++Q E ++++  +     +  K
Sbjct: 558 -TQQVEALKRKRIEHGLSDDETK 579


>gi|113461379|ref|YP_719448.1| DNA primase [Haemophilus somnus 129PT]
 gi|112823422|gb|ABI25511.1| DNA primase [Haemophilus somnus 129PT]
          Length = 584

 Score =  348 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 168/630 (26%), Positives = 285/630 (45%), Gaps = 55/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI D+L    I +LI   V   ++       DY ACCPFH EKTPSF  +  K F
Sbjct: 4   KIPHSFIDDILARTDIVDLIDSRVKLKKQGR-----DYQACCPFHHEKTPSFTVSPKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLI 118
           Y+CF CH  G+ +SFL       F+E+++ LA++ G+ +P  +   EK     K + +L 
Sbjct: 59  YHCFGCHAHGNAISFLMEYDKLEFVEAIEELASLHGLEVPRENTLDEKTRVSFKTKRNLY 118

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            L++    F+   L      +   YL +RG+    I+ F++G++P       +       
Sbjct: 119 ELMQEIAKFYQEQLTQNIPAQN--YLQQRGLSIEIIQRFQIGFSPQQSSFFIKKFATNRE 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237
             +K+ + G++     S   +DRFR R+ FPIR  RG+VIAFGGR +++     KYLNSP
Sbjct: 177 EIQKLFDVGMVNKR-ESGELFDRFRQRVTFPIRDRRGRVIAFGGRIITQSDNRPKYLNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E++ +HKG  LY  F AL             +S   +++VEGYMDV++L Q GV   V+S
Sbjct: 236 ESVTYHKGYELYGLFEALQI----------NDSPEMLVIVEGYMDVVALAQFGVDYAVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA T  QL+L ++ + +I+ C+DGD  G  AA++A++  L  L  G ++ F+ L   E
Sbjct: 286 LGTATTTEQLQLAFRSTEQIICCYDGDRAGRDAAWRALENALPLLEDGRQLKFIFLPEKE 345

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSFIR YGK  FE  I ++  L + L+   +    F++ + +A+L       I  +  
Sbjct: 346 DPDSFIRQYGKEGFEDYIHQAQSLSEFLFNTLSAKVDFSSTEGKAKLASLAIPLIQKVPG 405

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           + LR         ++       +       +  +   +       +              
Sbjct: 406 EMLRLSLRDMFGQKVGIFNPDKLDRLLSNQQQVEYKQKIPKTVKRTPM------------ 453

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                    L+  L+ +  + +     L+ ++        L+  +     E       +I
Sbjct: 454 -------RVLIALLLQNTNLAKIVPD-LSPLKVLQEPGLDLFEKIVILCRENVGIRAGQI 505

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +   +  + + L+ L               A   D  +   +   ++   +L+ ++ EE
Sbjct: 506 LEHWRDTEYSQALEILATW----------EHAVDDDKIEQEFRETLIHLYKQLVDKRIEE 555

Query: 598 I--EKQIAQVTAKGEAEKTAILISILHEVH 625
           +  ++++  +T   + E  A L+S   E  
Sbjct: 556 LIGQERMVGLTNDEKIE-LAQLLSKKQEKK 584


>gi|300690866|ref|YP_003751861.1| DNA primase [Ralstonia solanacearum PSI07]
 gi|299077926|emb|CBJ50565.1| DNA primase [Ralstonia solanacearum PSI07]
          Length = 603

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 181/643 (28%), Positives = 286/643 (44%), Gaps = 59/643 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTD--L 117
           +CF C   G  + FL    G S++E+++ LA   GV +P      P   + E+      L
Sbjct: 57  HCFGCGAHGSAIGFLMEFSGLSYVEAIRELAQSVGVAVPEERGGLPPAARAERQAKTVAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             ++  A+D +   L++        YL  RG+       F LGYAPD   SL        
Sbjct: 117 GDVMARASDHYRKQLRS--APNAVQYLKGRGLTGEIAGHFGLGYAPDDWQSLEAVFGAYR 174

Query: 178 FSEEKI--IEAGLLIDGDN-----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
                +  IEAGL+I+ +          YDRFR+R++FPIR+++G VI FGGR L +GE 
Sbjct: 175 DDAIAVPLIEAGLVIESEKTDADGRHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF KG  LY  F A N ++             ++++VEGYMDV++L Q G
Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFGYVLVVEGYMDVVALAQLG 283

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
             N V++LGTA T   ++ L +    ++  FDGD  G RAA +A++  L H+     V F
Sbjct: 284 FANAVATLGTACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKTVKF 343

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           + L    DPD+FIR  G  AF   +  ++PL   L +  TE+     P+ RA  +   K 
Sbjct: 344 LFLPPEHDPDTFIREEGTEAFAAEVRNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKP 403

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +    LR    + + +         I    G      +  R   ++    R   ++
Sbjct: 404 LLSAMPPGGLRLQIVRGLAEMTG-TTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTA 462

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFV 527
           L            E  +L  L+ +PA+           +    EL   + L   L    V
Sbjct: 463 L------------EQKVLRLLMRYPALAAR-LDVDTRTQLTAPELPQGEMLSGLLAECDV 509

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                      +RL +  + E    L   V +  +     E    +     Q+ LA    
Sbjct: 510 AGPEMHFGAFVERLGQTPYAEAFAGLRMAVLNDDIEL---EPATQEFDAAVQKMLA---- 562

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629
              L R+ + +++++ +     +A+K    +  L  E+  +  
Sbjct: 563 -EPLRRELDMLQRKM-EGGHASDADK--ERLRWLVSEISRRRR 601


>gi|307708622|ref|ZP_07645086.1| DNA primase [Streptococcus mitis NCTC 12261]
 gi|307615371|gb|EFN94580.1| DNA primase [Streptococcus mitis NCTC 12261]
          Length = 586

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 149/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G  F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGIPFMEAVQILGQRVGIEVEKPLYSEQKSASPHQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F++G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFRIGLAPPERNYLYQRLSGQYRD-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
            +++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 177 FLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYRAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSITA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQAQRQNRMEGISRPTPIT----MPVTKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +D  E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFDTPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQPEEVERAWYQVLAQDLPAEMSPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 RVQEASHVGDTDTALEELERLISQKRRME 586


>gi|152967305|ref|YP_001363089.1| DNA primase [Kineococcus radiotolerans SRS30216]
 gi|151361822|gb|ABS04825.1| DNA primase [Kineococcus radiotolerans SRS30216]
          Length = 629

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 145/643 (22%), Positives = 263/643 (40%), Gaps = 41/643 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D ++ +   + +  ++G+ V           G +   CPFHDE+TPSF      G 
Sbjct: 4   RIHPDDLQAVKERVRLDEVVGEQVALRSGG----VGSFKGLCPFHDERTPSFTVRPVTGR 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK------IQT 115
           + CF C   GD + F+  + G  F ++V+RLA  AGV L  VD      ++       + 
Sbjct: 60  WRCFGCGESGDAIEFVMRIDGLGFADAVERLAQRAGVQLRYVDDGGRSTQRPASDAGQRQ 119

Query: 116 DLIRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            L+ +  VA +F+   L      +    +L ERG        F +G+AP++  +L   LR
Sbjct: 120 RLLEMHRVAEEFYGQQLAAPGPAETARGFLAERGFSREDAARFGVGFAPNTGDALLRQLR 179

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--K 232
            KGF EE+++ +GL   G      YDRFR RL++PIR   G  +AFG R L   + +  K
Sbjct: 180 AKGFGEEELVTSGLA--GQGQRGLYDRFRGRLVWPIRDVGGHTVAFGARRLFDDDRIEAK 237

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPET ++ K + LY    A   + ++ R          +++VEGY DV++   +GV 
Sbjct: 238 YLNSPETPVYKKSQALYGLDLAKREISRTKR----------VVVVEGYTDVMACHLSGVG 287

Query: 293 NVVSSLGTALTEYQLRLLWKL------SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
             V++ GTA  E   R++ ++      S  +V  FDGD  G +AA KA +L         
Sbjct: 288 TAVATCGTAFGEDHARIVQRMLGEADGSAEVVFTFDGDAAGQKAALKAYELDQRFSA--- 344

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
           +    +   G+DP       G+ A  +L+   +PL +   +   E    N+   R     
Sbjct: 345 QTYVAVAPAGQDPCELRLSAGEAAVAQLVEGRVPLFEFAIRSTIERFDLNSDAGRLAALD 404

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
                +  I+D+ L+  Y+  +      L ++++ +         + A+   +   +   
Sbjct: 405 AAAPIVGAIRDRGLQQRYAINLDRWTGFLDERFVLDRVRAHS-GARPAQQPGRPAAAVAP 463

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
               L         +  E  +L  ++  P  + + +  L    +     + +   + +  
Sbjct: 464 APPRLPAADPRDPVAQLERQVLSCVLQAPWAVADVFDSLEADAFGAPGHRAVHDAVTAAG 523

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
              +         R+ +   G +   +D         S   E       + + + L    
Sbjct: 524 GPGEAPQGPAWLARVLDYADGPVAGLVDELAASDLPVSNEEE------LERWGRQLVAAL 577

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             +  +R   +  + + ++    +AE+ A + + L  +     
Sbjct: 578 VGQSATRAVADARRTLQRLDPTSQAEEYAAVSAELFRLEAARR 620


>gi|313903304|ref|ZP_07836696.1| DNA primase [Thermaerobacter subterraneus DSM 13965]
 gi|313466392|gb|EFR61914.1| DNA primase [Thermaerobacter subterraneus DSM 13965]
          Length = 709

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 168/725 (23%), Positives = 281/725 (38%), Gaps = 98/725 (13%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 + ++   + I  +IG YV   R        +Y A CPFHDE+TPSF  + +K  
Sbjct: 3   RLDEHVVDEIRQRLDIVEVIGDYVPLRRAGR-----EYVALCPFHDERTPSFTVSPAKQM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           +YCF C V GD  +F+    G +F E+V +LA  AGV LP     P   +    Q  L R
Sbjct: 58  FYCFGCQVGGDVFTFVMKKEGWTFPEAVAQLARRAGVALPERPLSPGQRRVRDRQEQLAR 117

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           ++E+A  FF  +L++   +    YL+ERG+     + + LGYAP     L   L ++G +
Sbjct: 118 VLELAAAFFRQALRSPAGETARAYLEERGLPPALWDRYGLGYAPPGWDGLVGALERRGVA 177

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + EAGL          YDRFR+R++FPI   RG+V+ FGGR+L  G+  KYLNSPET
Sbjct: 178 PALLAEAGLA-QPRPGGGYYDRFRHRVMFPITDPRGRVVGFGGRSL-DGQEPKYLNSPET 235

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV-VSSL 298
            LF+K +  Y    +   L+           +   ++VEGYMD +++ +AGV    V+SL
Sbjct: 236 ALFNKRRLWYGLDWSRPRLR----------ETGTAVVVEGYMDAIAVDRAGVGYAAVASL 285

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+L+E Q+ LL +   R+++ +D D  G RA  + + +       G  V    L  G D
Sbjct: 286 GTSLSEEQVELLARYVQRVIIAYDADAAGQRATMRGLAM---FADAGVEVRVAQLPPGRD 342

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD  +R  G  A  +++  ++P+V+  +++        TP  RAE    L   +  +   
Sbjct: 343 PDDVVRREGPDALRRILEAAVPVVEYRFRQVMGQVDTATPRGRAEAVEALAPWLARVSSP 402

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG----------------- 461
             R  Y +     L         E     R  +  A    +                   
Sbjct: 403 VERGEYVRRYAVALGVEEGILWQEVRRAARALRSRAPATGRPARGTLRGSIAGTGGVRGE 462

Query: 462 ---------------------PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                                 + R     +   ++       E  L+   + HP     
Sbjct: 463 RAGRAGGAGGTGLPDAGGNNVQTVRHTNRRVPVEEVPAGVVRAERGLVAASLFHPQWQAL 522

Query: 501 QYQELADIRYDNNELQKLWS-FLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQL--DR 555
               L    +     + L+                  +  RL     G G++ +     +
Sbjct: 523 IASRLEPGDWVTPAHRLLFELACREAQATGGGVDTGRVLSRLHSLAAGGGDIGRSETGRQ 582

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRF------------RLLSRQKEEIEKQIA 603
           +   AG      + +    + G    +                    + ++   +   + 
Sbjct: 583 EGNMAGSAENERDRDADQPQNGVHDGVEERLPAGAAGSSSPAVAGAAVYQEAVSVLAALV 642

Query: 604 QVTAKGEAE--KTAILISILH---------EVHIQIHQIESQE-----AMIEGFGKMS-- 645
           Q    G  E  +   ++             ++  +I Q+E+        ++  F  +S  
Sbjct: 643 QAPEPGPDEPGEMERILDDYIKTLKRHSLWKIQRRIAQLEASGQDVPVDLVTRFQLLSAQ 702

Query: 646 --GRL 648
             GR+
Sbjct: 703 LKGRV 707


>gi|315655775|ref|ZP_07908673.1| DNA primase [Mobiluncus curtisii ATCC 51333]
 gi|315489839|gb|EFU79466.1| DNA primase [Mobiluncus curtisii ATCC 51333]
          Length = 692

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 143/708 (20%), Positives = 257/708 (36%), Gaps = 101/708 (14%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            +  + ++ +   IPI +++  YV   R+ +          CPFHDEKT SF     +  
Sbjct: 4   KFDPEDLQKVRD-IPIESVVSDYVSLQRKGS-----SLLGLCPFHDEKTASFSVTPVRNM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           ++CF C   GD + F+  + G +F E+V+ LAA AG+ +  V+     KE+     +  L
Sbjct: 58  WHCFGCSKGGDTIDFVQLIEGLTFPEAVEFLAARAGITMHYVEGAAITKERVEPGTRQRL 117

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +    VA DFF   L +   +R   +++ R   S     F +GYAP    +L ++LR KG
Sbjct: 118 LECNRVAQDFFVSQLVSPEAQRARDFVEGRAFTSQDAAHFGMGYAPPGWNNLTDYLRSKG 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235
           F++++I+  GL          YD FR+R+++PI+   G V+ FGGR L   +S   KY+N
Sbjct: 178 FTDQEIVTVGLGK--PGQRGIYDVFRDRVMWPIKDVTGAVLGFGGRRLDDSDSQVPKYIN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +PE+ ++HK   LY    A   + K  R           ++VEGY DV++   +G+   V
Sbjct: 236 TPESPIYHKSSVLYGLDLARPNIGKERR----------CVIVEGYTDVMAAHLSGITTAV 285

Query: 296 SSLGTALTEYQLRLLWKLSP--------------------RIVLCFDGDDPGLRAAYKAI 335
           ++ GTA T+   + + +                        ++  FDGD  G  AA KA 
Sbjct: 286 ATCGTAFTDEHAKQIRRFIGTSADSASSLKLPGGLPPRGGEVIFTFDGDAAGQAAALKAF 345

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
                           +   G DP       G  A   LI    PL D + K        
Sbjct: 346 RTDQDFASQ---AFVAVADDGLDPCDLRMQRGPGAVRDLIEGRKPLFDFVLKTIISKYDL 402

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
            +P  R E        +  I+D+ LR  Y + +   L    +      +   R  +   R
Sbjct: 403 ESPAARIEAMRATAPVLAEIRDKALRTEYVKQVSGWLGVSVRDTWYTVNEVWRRIRSQQR 462

Query: 456 HRDQKGPSQR--------------------------------LMQSSLVKGKLSKKPSLR 483
                                                     + Q+ L     +      
Sbjct: 463 ASSANSSQPGGLGGPGNAAGGSEKGANLGNLTGADASGSPQVIPQTRLDPAVNTDPVWRV 522

Query: 484 EAALLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQ------------- 529
           E  +L+  +  P    +  +  L    +    L+ ++  + +                  
Sbjct: 523 ERDVLIAALQFPGFAAQTAFDTLDPQSFTQPTLRAIFEVIAAMGGAGEYRRLAEVAQAAG 582

Query: 530 ----KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV--DVRQGYQQALA 583
                          +  +    L+  L              ++        + + Q   
Sbjct: 583 EPHPGNVALNRWAAAVKAQAGSVLVGALTNLATRPAPLYEANQSAEETRTAAESWVQNAV 642

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                + L+ Q   ++ Q+ ++ +   + + A +   L  +  ++ ++
Sbjct: 643 ESMERKGLNAQIASLKAQLRRLDS--NSPEKAEVFGKLINLENRMREL 688


>gi|73662503|ref|YP_301284.1| DNA primase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72495018|dbj|BAE18339.1| DNA primase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
          Length = 594

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 148/634 (23%), Positives = 263/634 (41%), Gaps = 48/634 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIDQSTINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE-----KIQT 115
             +CF C   G+   F   +    F E+V+ L     + +        +           
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDIPFTEAVKELGERVNIKVETDQSYANQDNGHQVASDDL 115

Query: 116 DLIRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            +I + E+  D++H++LK     +    YL ERG     I+  K+GYAP++ +   + L+
Sbjct: 116 KMIEMHELMQDYYHYALKKTVEGEAALNYLKERGFTDELIDARKIGYAPNNAHFCHDFLK 175

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           +K +  E   E+GLL   + + + YDRFR+R++FP+ +++G+ + + GRT    +  KYL
Sbjct: 176 KKEYDIELAYESGLLSRNEENFSYYDRFRDRIMFPLNNAQGRTVGYSGRT-YTNQEPKYL 234

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +F K + LYN   A   ++K          +  IIL+EG+MDV+   QAG++ V
Sbjct: 235 NSPETPIFQKRRLLYNVDKARKSIRK----------NDEIILLEGFMDVIKSDQAGLKQV 284

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GT ++   +  + KL+  + L FDGD  G  A  K+       L  G  V  V L 
Sbjct: 285 VASMGTQISNEHIAFIKKLTTNVTLMFDGDFAGTEATLKSGQ---ALLQQGFNVFVVQLP 341

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
           +  DPD +I  +G  AF   +        +      ++   N           + N I+ 
Sbjct: 342 KNMDPDEYIGKHGADAFNYYVEHEKKSFIIYKIHTHQDEIENNDLAYERYLKEITNDISF 401

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           ++   LR    Q + +  +        E      Y++ +                ++ + 
Sbjct: 402 MQSTILRKKILQEVSELFKVSLDSLNNEVGQQQDYYQPH-----------NYQIPTVPEF 450

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
               K    E ALL   +N        ++ L    + N   +++++ L   + E   F  
Sbjct: 451 NNLSKHEKAERALLKHFMNDKDTFLNYHKLLQTEDFTNQYFKRIFNVLHEFYSENDTFNI 510

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            ++ Q +      E    LD  + +        E         Y   L   +        
Sbjct: 511 SDVLQYIDINEIKEAFISLDNYMIN--------EEPYEYEIDDYINTLTSNRNEET---- 558

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            E + +++ + +  G+ E     +  +   +   
Sbjct: 559 IESLNQKLREASRLGDLELQKYYLEKIVNHNKNR 592


>gi|33865572|ref|NP_897131.1| DNA primase [Synechococcus sp. WH 8102]
 gi|33632741|emb|CAE07553.1| putative DNA primase [Synechococcus sp. WH 8102]
          Length = 683

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 179/690 (25%), Positives = 289/690 (41%), Gaps = 81/690 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I +++G +V   ++       ++   CPFHD+  PS   + +K F
Sbjct: 5   RLHPRTIDAVKERADIVDVVGDHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           YYCFSC   G+ + FL      SF + V  LA    VP+  VD   +++ K     +  L
Sbjct: 60  YYCFSCGAGGNSIKFLMEFQRQSFSDVVLDLARRYQVPVETVDGPQQERLKQQLSRREKL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            R + +A  +F   L++   ++   YL E RG+     E F LGYAPD   SL  HL+Q 
Sbjct: 120 QRALALAAGWFRSQLRSTTGEQALAYLTEARGLTLATQETFGLGYAPDQWDSLLNHLQQV 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G S E +  AGL++        YDRFR+R++ PI   +G+VI FGGR+L   E  KYLN
Sbjct: 180 EGLSAELLEAAGLVVPRKGGNGFYDRFRHRVMVPIHDRQGRVIGFGGRSLDGSEP-KYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK+L+    A N ++K  R           ++VEGY DV++L  AG+ N V
Sbjct: 239 SPETEVFEKGKHLFGLDKATNTIRKQDRA----------VVVEGYFDVIALHAAGITNAV 288

Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352
           +SLGTAL+  Q+  L +++   RIVL FD D  G+RAA +AI  V    + G   +  + 
Sbjct: 289 ASLGTALSSQQITQLCRVTDGKRIVLNFDADGAGVRAANRAIGEVEQLALQGQLELRVLH 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+DPD F++ +G   +  L+ ++   +D   ++   +R     D+  +    L   +
Sbjct: 349 LPSGKDPDEFLKDHGAGDYRALLDQAPLWLDWQIEQALADRDLAKADQFQQAVSALVALL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    +R +Y Q + +RL     +   +     R   K  R             S   
Sbjct: 409 GKLPQSAVRTHYLQRVAERLSGGQGRLALQLEDDLRQQVKGQRWHG--------RSSRHD 460

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVEQ 529
           +   + +    EA LL   ++ P       QEL       +     + LW+ L       
Sbjct: 461 QPGDTSQRERCEADLLRLYLHAPRYRGTIRQELRQRELEDFAIPHHRLLWASLTELEETN 520

Query: 530 KYFLPEEIHQR----------------LCERGF---GELLKQLDRQVRDAGLWSATTEAN 570
                 E                    L ++       LL +L   +    L        
Sbjct: 521 LGVGRLESISHGEDDGDGLDGLDLPRLLTDQLLLENSPLLSRLTPLLEPGELERVALAEP 580

Query: 571 IVDVR--QGYQQALALYKRFRLLS-----RQKEEIEKQIAQVTAKGEAE--------KTA 615
           +  +R      +    +KR R L      ++ + +E  I+ +    + +        +  
Sbjct: 581 LEQLRGLAALLERQKSFKRCRHLLEAWGGQRLQTLEACISVLVQDNQEDQQGVDMEGRIE 640

Query: 616 ILISIL-------HEV----HIQIHQIESQ 634
            L   L        E+       I  ++ Q
Sbjct: 641 QLFEELNRDALHYQELYYSERKHIQHLDQQ 670


>gi|17546935|ref|NP_520337.1| DNA primase [Ralstonia solanacearum GMI1000]
 gi|17429235|emb|CAD15923.1| probable dna primase protein [Ralstonia solanacearum GMI1000]
          Length = 603

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 181/643 (28%), Positives = 284/643 (44%), Gaps = 59/643 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTD--L 117
           +CF C   G  + FL    G S++E+++ LA   G+ +P      P   + E+      L
Sbjct: 57  HCFGCGAHGSAIGFLMEFSGLSYVEAIRDLAQSVGMAVPEERGGLPPAARAERQAKTVAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             ++  A+D +   L+ A       YL  RG+       F LGYAPD   SL        
Sbjct: 117 GDVMARASDHYRKQLRGAPGA--VQYLKGRGLTGEIAGHFGLGYAPDDWQSLESVFGAYR 174

Query: 178 FSEEKI--IEAGLLIDGDN-----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
                   IEAGL+I+ +          YDRFR+R++FPIR+++G VI FGGR L +GE 
Sbjct: 175 DDAIATPLIEAGLVIESEKTDADGRHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF KG  LY  F A N ++             ++++VEGYMDV++L Q G
Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFGYVLVVEGYMDVVALAQLG 283

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
             N V++LGTA T   ++ L +    ++  FDGD  G RAA +A++  L H+     V F
Sbjct: 284 FANAVATLGTACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKIVKF 343

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           + L    DPD+FIR  G  AF   +  ++PL   L +  TE+     P+ RA  +   K 
Sbjct: 344 LFLPPEHDPDTFIREEGTEAFAAEVRNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKP 403

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +    LR    + + +         I    G      +  R   ++    R   ++
Sbjct: 404 LLSAMPPGGLRLQIVRGLAEMTG-TTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTA 462

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFV 527
           L            E  +L  L+ +PA+           +    EL   + L   L     
Sbjct: 463 L------------EQKVLRLLMRYPALAAR-LDADTRTQLTAPELPQGEVLSGLLAECDT 509

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                      +RL +  + E    L   V +  +     E    +     Q+ LA    
Sbjct: 510 AGPEMHFGAFVERLGQTPYAEAFAGLRVAVLNDDIEL---EPATQEFDAAVQKMLA---- 562

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629
              L R+ E +++++ +     +A+K    +  L  E+  +  
Sbjct: 563 -EPLRRELEMLQRKM-EGGHATDADK--ERLRWLVSEISRRRR 601


>gi|311113194|ref|YP_003984416.1| DNA primase [Rothia dentocariosa ATCC 17931]
 gi|310944688|gb|ADP40982.1| DNA primase [Rothia dentocariosa ATCC 17931]
          Length = 676

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 156/694 (22%), Positives = 279/694 (40%), Gaps = 90/694 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++     I  ++  YV           G Y   CPFHDE+TPSF+     G Y
Sbjct: 5   IRKEDIDEVRARTDIREIVEGYVTLKGAG----IGAYKGLCPFHDERTPSFNVRPQMGTY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   GD  SF+ A+    F E+V+RLAA  G  L     +P+   +  ++  L+  
Sbjct: 61  HCFGCGESGDVYSFVMAMEHTGFTETVERLAARIGYTLHYEGGNPRDRYEASLRRRLLDA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            ++A +FF  SL +A       +L  RG D  A + F +GYAP    +L +HLR +GF++
Sbjct: 121 HKIAAEFFERSLYSANAGEAQRFLGARGFDPAATKTFGVGYAPRGWDNLLKHLRSQGFTD 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
           E++   G+  +G+     YDRFR R+I+PIR+  G+ I FG R L   +   KYLN+PET
Sbjct: 181 EELRATGMFSEGNR--GLYDRFRGRIIWPIRTIAGETIGFGARRLFDDDQGPKYLNTPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            L+ K + LY    A   + K          +  +++VEGY DV++   AG++  V++ G
Sbjct: 239 PLYKKSQVLYGIDLAKREMTK----------TKQVVIVEGYTDVMAAHLAGIKTAVATCG 288

Query: 300 TALTEYQLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           TA     ++++ ++         I+  FDGD  G +AA  A +     +         + 
Sbjct: 289 TAFGAGHIKVVRRMITDDGSGGEIIFTFDGDAAGQKAALAAFEEDQRFVAQ---TYVAVA 345

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  A   LI    PL + +     +     T + R      +   I 
Sbjct: 346 QEGMDPCDLRLHRGDAAVRSLIASRRPLFEFVIDTTLKRFDLTTLEGRVLAMRAIAPIIA 405

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR------------------ 455
            I+D+ LR  Y + +  +L    ++     +   R+ ++  R                  
Sbjct: 406 GIRDRDLRPAYMRKVSGQLGMELEEIQRAVAYAQRHPQQKKRYEPVAQQAQTPRYEQVSG 465

Query: 456 --------------HRDQKGPSQRLMQS-----------------------SLVKGKLSK 478
                         +     P+ +   S                        ++    + 
Sbjct: 466 YGQQVPQNYSAQPWNASAGNPAYQPEGSVNPGNTMPDTHSDTSVANTAGGEPILAPDPAD 525

Query: 479 KPSLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +  E A L   + HP ++   Q+QE A + +     +++   +             E 
Sbjct: 526 PVARLEKAALEIALQHPHLMSVSQWQEFARVEFRYRMHREISRGIIHAASTVAPAAGVEW 585

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +      E+   +          +A   A+   + +  +  L        ++RQK +
Sbjct: 586 LNVVRSGTIAEVHPAIAELSV-----AALPIAHEEHLPRFIEGTLNSLF-IHQITRQKSD 639

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +  ++ Q+++  + E+ A +   L E+ ++   +
Sbjct: 640 LMMRLEQLSSASDGEEYAHVQRELLELEMRRRTL 673


>gi|297570261|ref|YP_003691605.1| DNA primase [Desulfurivibrio alkaliphilus AHT2]
 gi|296926176|gb|ADH86986.1| DNA primase [Desulfurivibrio alkaliphilus AHT2]
          Length = 592

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 164/631 (25%), Positives = 271/631 (42%), Gaps = 56/631 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           ++ ++ +     I+ +IG++V   R   N         CPFH EKTPSF  +  +G ++C
Sbjct: 8   QEVVRRIKEAADIAEIIGEHVSLQRSGANL-----KGLCPFHAEKTPSFMVSPDRGSFHC 62

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIE 122
           F C   GD  SFL      SF E++++LA    +PL      P+ +++ + + +L  +  
Sbjct: 63  FGCGEGGDVFSFLMLYHRLSFPEALRQLADRYRIPLAENTLTPQQQEEARRRENLYAVNA 122

Query: 123 VATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A + +HH  L +        YL +RG+    I+ F+LG+APDS   L   L+++  S E
Sbjct: 123 RAAELYHHYLLHSPAAAAARDYLAQRGMAGEIIQRFQLGFAPDSWDFLFNQLKKERLSPE 182

Query: 182 KIIEAGLLIDG------DNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
              EAGLL          ++   YDRFRNR+IFPI    G+V  FGGR L +GE  KYLN
Sbjct: 183 LAAEAGLLAAKKNAPDGHSARGYYDRFRNRIIFPITDLTGRVCGFGGRILGQGEP-KYLN 241

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +PET +F K + L+  +     ++K          +   +LVEG  D+L+L    +  VV
Sbjct: 242 TPETPVFDKSRILFGLYQHREAIRK----------AKSCLLVEGNFDLLALAAHEISEVV 291

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           + LGTALT   LR+L   +   VL FDGD  GL+AA +AI L L   + G      +L  
Sbjct: 292 APLGTALTTEHLRILRGYADEAVLLFDGDAAGLKAAMRAIPLFLAAKLTG---RVAMLPE 348

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G DPD+F+R +G     +L V ++ L + ++            D +  +   L   ++ +
Sbjct: 349 GHDPDTFVRHHGPDGLRQLTVAAVSLPEFVFTELVAR-HGLGVDGKNRIIEELAPIVHSL 407

Query: 416 KDQ-KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
            DQ  LR  +     +RL     ++                    + P  R         
Sbjct: 408 DDQMLLRTRFIAHFSERLGISGDQFCQSI---------------ARRPQVRRQPPEEGDQ 452

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           + + +    E  L   L  H + L +  +        +    +L   +           P
Sbjct: 453 EATARLEANEEKLFAFLFLHGSHLPDFMEAGLQEVITSPAAHRLLELMLEA-GNDFVRTP 511

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E +   L E  F  L+ +L          +   + +  +  Q   Q L   +R +   + 
Sbjct: 512 ENLLN-LAEGSFKPLVARLL-----IQGGTFYPDEHREESSQQLMQWLKRNQRKKTADQ- 564

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
              + ++I      G+ ++   L+     + 
Sbjct: 565 ---LNREINAAYQSGDQQRLLELMQQKQALQ 592


>gi|239631414|ref|ZP_04674445.1| DNA primase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239525879|gb|EEQ64880.1| DNA primase [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 595

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 161/633 (25%), Positives = 267/633 (42%), Gaps = 41/633 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   +  +L  + I++ IGQYV   +   N      +  CPFH+E TPSF  N+ K  +
Sbjct: 2   IPEATVDKVLKAVNIADYIGQYVQLRKTGQNL-----FGLCPFHEEHTPSFSVNEPKQIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CFSC   G+   F+      +F E+V+++A  AG+PL          +   +    +++
Sbjct: 57  HCFSCGRGGNVFKFVMDYDNATFPEAVKKVADFAGMPLDAQVGHAAPVDPEISKQQHILQ 116

Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
              D FHH L N  + +    YL +RG+    IE F+LGYAP+ R  L   L  +    +
Sbjct: 117 DTADLFHHILMNTEKGQTALDYLHKRGLTDDTIEAFQLGYAPEERNLLVAFLNNRKVDYQ 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
               +GL ++       +DRF +R++FP+  S GQVI F GR LSK ++  KYLNSPET 
Sbjct: 177 DQRASGLFVEDQEG-KLFDRFNDRVMFPLTDSHGQVIGFSGRILSKDKTQAKYLNSPETK 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF+K   L+N   A     +              IL EGYMDV++  QAGV+  ++S+GT
Sbjct: 236 LFNKRDVLFNLHRAKADFGRDGGP----------ILFEGYMDVIAAYQAGVKTGIASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ ++  LS R+ +C+DGD+PG +A  +A+ ++  H     + + V+L  G DPD
Sbjct: 286 SLTTEQVDIISHLSKRLTVCYDGDEPGQKAIERAVAMLADHPR--LQTDVVVLPDGMDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FIR  G  AF+  +   L     + +        N    +          I  I +   
Sbjct: 344 EFIRARGAEAFQAQVKSVLTPTAFILQFLARGVDMNNDQAKLTYLNAALKTIGKISNPVA 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y + + D                 +   + +  R                 +   + 
Sbjct: 404 RAVYVKQLADTTGVPESALNQSLPAPQQAVPQQSSARVSYQ-----TAPVNQPVRPIDRY 458

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +  +  LL  + +   ++Q      A   +     Q L++       EQ          R
Sbjct: 459 TAAQRQLLYYVWHDDLVMQRLKN--AAFTFPAPHFQTLFTGWLDFLHEQPDGELAGFLDR 516

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +     +   +  QV         TEA I ++ Q    A  +         + + I++
Sbjct: 517 V-DPDLSGVAASVAMQVLPEA-----TEATIDELIQTITSASTV--------ERLQAIKQ 562

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            I +    G+ +K   L      +   + Q + 
Sbjct: 563 AITEAQRLGDKQKLGELTVQYVNLMKLLKQQQG 595


>gi|88808437|ref|ZP_01123947.1| DNA primase [Synechococcus sp. WH 7805]
 gi|88787425|gb|EAR18582.1| DNA primase [Synechococcus sp. WH 7805]
          Length = 693

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 174/674 (25%), Positives = 295/674 (43%), Gaps = 63/674 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ +     I +++G++V   ++       ++   CPFHD+  PS   + +K F
Sbjct: 5   RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           YYCFSC   G+ + FL      SF + V  LA    +P+  VD   +++ K     +  L
Sbjct: 60  YYCFSCGAGGNSIKFLMEFQRQSFSDVVLDLARRYQLPVETVDGPQQERLKQQLSRRDTL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            R++ +A  +F   LK A       Y  D+RG+    +E F+LGYAPD    L +HL+Q 
Sbjct: 120 HRVLALAAGWFRSQLKVASGADALRYLQDKRGLSDATLEQFELGYAPDQWDGLLKHLQQI 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G   E +  AGL++        YDRFR+R++ PI+  +G+VI FGGR+L   E  KYLN
Sbjct: 180 EGLDPEHLEAAGLVVPRKGGNGFYDRFRHRVMVPIKDRQGRVIGFGGRSLDGTEP-KYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK+LY    A + ++K  R           ++VEGY DV++L  AGV N V
Sbjct: 239 SPETEVFEKGKHLYGLDRAASAIRKDDRA----------VVVEGYFDVIALHAAGVTNAV 288

Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352
           +SLGTAL+  Q+  L +     RIVL FD D  G+RAA +AI  V    + G   +  + 
Sbjct: 289 ASLGTALSSQQITQLCRCCDGKRIVLNFDADGAGVRAANRAIGEVEQLALQGQLELRVLH 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+DPD F++ +G   +  L+ ++   +D   ++  E R  +  D+       L   +
Sbjct: 349 LPSGKDPDEFLKDHGAGDYRALLDQAPLWLDWQIEQVLEGRDLSKADQFQRSVSALVELL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    +R +Y Q + +RL     +   +     R   +  R   +    +        
Sbjct: 409 GKLPQSAIRTHYIQQVSERLSGGQGRLALQLEEDLRQQVQGQRWHGRSARHE-------- 460

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFV-- 527
           K   + +    EA +L   ++ P+      QEL       +     + LWS L       
Sbjct: 461 KSGEASQRERCEAEILRLYLHCPSHRGSIRQELRRRELEDFALQHHRLLWSCLTELEEGN 520

Query: 528 --------------EQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEAN 570
                                 ++ + L ++       L+ +L   +    L        
Sbjct: 521 LGSVRLESISRGEDRGDDLADLDLPRLLTDQLLLENSSLVTRLTPLLEPGELQKVALSRP 580

Query: 571 IVDVR--QGYQQALALYKRFRLLS-----RQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
           +  +R      +    +KR R L      ++ + +E+ IA +  +   ++    + +   
Sbjct: 581 MEQLRGTAAMLERQKSHKRCRHLLEAWAGQRLQTLERCIAVLIDEEREQQQPQTVDMEQR 640

Query: 624 VHIQIHQIESQEAM 637
           +      + + EA+
Sbjct: 641 IQAMFDDLNA-EAL 653


>gi|329119714|ref|ZP_08248394.1| DNA primase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464163|gb|EGF10468.1| DNA primase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 589

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 183/627 (29%), Positives = 291/627 (46%), Gaps = 49/627 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL  + I ++I Q V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLSKVDIVDIIDQQVPLKKSGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P    +        +++K Q  
Sbjct: 57  HCFSCGAHGSAVGFVMEHQGLSFPEAVQYLADRVGMVVPQTRGRSDNPEARAQRKKTQQT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L      A  F+   LK++   +   YL+ RG+ +  I  + LGYAP+    L +    +
Sbjct: 117 LEETTAAAASFYAQQLKSSPAAQQ--YLNTRGLSAEIIAHYGLGYAPEGWQPLAQVF--R 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    +I++G++I  +     YDRFR+R++FPIR  RGQVI FGGR L      KYLNS
Sbjct: 173 PYPSSPLIDSGMVIHNEEQNRHYDRFRHRIMFPIRDIRGQVIGFGGRVL-DDSKPKYLNS 231

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T LF KGKNLY  + A   ++ + R          I++VEGYMDV++L Q G+   V+
Sbjct: 232 PDTPLFDKGKNLYGLYEARAAIKDAGR----------ILVVEGYMDVVALSQFGIGYGVA 281

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +++L + +  I  CFDGD  G +AA++A++  L  L  G  ++F+ L   
Sbjct: 282 ALGTATTAEHVKILMRQTDDIYFCFDGDAAGRKAAWRALENALPQLKDGKSLHFLFLPEE 341

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            DPDS++R +GK  FE  LI +S PL +  W   ++  + NT + +AEL       +  I
Sbjct: 342 HDPDSYVRAFGKAQFEDALIHQSKPLSEYFWYALSDGLNLNTQEGKAELVKKASPLLAQI 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
               L +     ++ RL ++      + +          R + +               +
Sbjct: 402 TAPALGFL----LKQRLGEMVGIDPADLAVLLGQEMPQRRVQAKSYKLPAYT------AR 451

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-LP 534
             + P+L +  L+ +L+ +PA       EL D      +   L   +      +      
Sbjct: 452 QMRMPTLAQR-LIRSLMANPAWAAHV--ELPDYLPPEEDAACLVD-IADFIRSRPTLPDH 507

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            +I +         +L  + RQ       +   +A   D          L K  R    Q
Sbjct: 508 AQIWEHFRGSRTETVLHTIYRQSG----MTDYDDAGEEDETAFADGLAKLAKSLRA--AQ 561

Query: 595 KEEIEKQIAQVTAK-GEAEKTAILISI 620
            + ++++ AQ      E +    L++ 
Sbjct: 562 LDILKQKTAQGGLTPAEKKLLLQLLAE 588


>gi|260911310|ref|ZP_05917909.1| DNA primase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634570|gb|EEX52661.1| DNA primase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 660

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 152/681 (22%), Positives = 274/681 (40%), Gaps = 67/681 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  I+ +     I +++ ++V   +   N     Y   CPFH+E+TPSF  + ++G  
Sbjct: 2   IDRATIEKIQEAANIVDVVSEFVTLRKAGAN-----YKGLCPFHNERTPSFMVSPARGIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   G  +SF+      ++ E+++ LA    + +          +++  +  +  +
Sbjct: 57  HCFGCGKGGTPVSFIMEHEQMTYPEALRWLANKYHIEIKERELSDDERREQNERESMFIV 116

Query: 121 IEVATDFFHHSLKNARDK--RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A   F  +L    D       Y   RG     I  F+LG+  + R  L      KG+
Sbjct: 117 NEWAAKHFEDTLHTNVDGLAIGMQYFRSRGFRDDIIRKFRLGFDLNDRELLARTAIDKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
           + + +++ GL    D+     DRF  R+IFP     G+V+ FGGR L    KG   KY+N
Sbjct: 177 NVDFLVKTGLCYRTDDG-RYVDRFAGRVIFPWFGVSGKVVGFGGRLLDTRTKGVQQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP++ ++HK   LY  F     + K             + +VEGY DV+S+ Q GV+NVV
Sbjct: 236 SPDSDIYHKDHELYGIFQGKKAIAK----------EDCVYMVEGYTDVVSMHQCGVENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ +Q+  L + +  IVL +DGD  G+ AA +  D+    L  G  V  +L   
Sbjct: 286 ANSGTALSVHQIHTLHRFTSNIVLLYDGDAAGIHAALRGTDM---LLAEGMNVKVLLFPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +    F + I ++         R   +     P  R+E    +   ++ I
Sbjct: 343 GDDPDSFARKHNAEEFRQYIADNQTDFIQFKTRVLLDG-VTDPTRRSEAISSIVQSVSVI 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR---HRDQKGPSQRLMQSSLV 472
            DQ LR  Y      RL       I   + Y R  ++       R  +   +   + ++ 
Sbjct: 402 PDQILRDTYLHDCSQRLGVAETTLINSMNRYIRESRERRSTEASRAVQEAVEATPRPTIQ 461

Query: 473 KGKLSKKPSLREAALLLTLINHPA-------------ILQEQYQELADIRYDNNEL---Q 516
                ++ +  E  L+  ++ +               +L     +     +  +EL    
Sbjct: 462 TVTPLQQAAKVERMLVEQVVKYGERIVLRNVEDENGNLLNLTVAQFIQYDFMQDELVFQH 521

Query: 517 KLWSFLFSDFVE---QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            L++ +  +  E      F  E       +    +L  +L                + +D
Sbjct: 522 PLFNRILQEAAERSVHPDFKSEPYFVHHEDIEVSKLATELCMDPYQYLKLKQPEPIHPLD 581

Query: 574 VRQGYQQA-------------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
             +   +              L L  R   +  + + ++ +IAQ  +  E EK   L++ 
Sbjct: 582 EEEKRLKEKEKEEELRQRTVHLLLDFRLDYVEHRLKTLQTEIAQAAS--EPEKLMQLMAE 639

Query: 621 LHE---VHIQIHQIESQEAMI 638
             +   +  ++ +    E ++
Sbjct: 640 FKDMQTIRNELARRLGSEIIV 660


>gi|225018168|ref|ZP_03707360.1| hypothetical protein CLOSTMETH_02105 [Clostridium methylpentosum
           DSM 5476]
 gi|224949165|gb|EEG30374.1| hypothetical protein CLOSTMETH_02105 [Clostridium methylpentosum
           DSM 5476]
          Length = 617

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 154/603 (25%), Positives = 263/603 (43%), Gaps = 28/603 (4%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
               FI  L +   I ++I  YV   R   N       A CPFH EKTPSF   +    +
Sbjct: 34  ISESFITQLKLACDIESIISSYVPMKREGRNK-----KALCPFHLEKTPSFVIYEDTQSF 88

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           YCF C   GD ++F+  +    +IE+V+ LAA  G+ +P  D + ++K +++  ++ +  
Sbjct: 89  YCFGCGAGGDVITFIMRIENLDYIEAVRFLAARVGMTVPE-DGQDDRKARLKARILEMNR 147

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  FFH +LK+   +    Y   R +    +  + LGYAPD  +SL  HL  KG+S E+
Sbjct: 148 EAARFFHANLKSPAGQAGLRYFAGRRLTKQTVVTYGLGYAPDDWHSLLRHLSSKGYSYEE 207

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
              A L++        YD+FRNR++FPI   RG VI FGGR L      KYLNS +T +F
Sbjct: 208 QEAAALVVKSQKG-NYYDQFRNRVMFPIIDLRGNVIGFGGRVL-DDSKPKYLNSADTPVF 265

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +NL++   A                   ++L EGYMDV+++ QAGV NVV++LGTAL
Sbjct: 266 KKSRNLFSLNFAKQA------------KERTLVLAEGYMDVIAMYQAGVHNVVATLGTAL 313

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q RL+ + +  +++ +D D+PG  A  KA  L       G     ++L   +DPD +
Sbjct: 314 TSEQARLISQYADDVIIAYDSDEPGQIATAKASRL---FEEAGVEARVLVLKDAKDPDEY 370

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I+ +G   F+ L+ +S  +    +KR  E      PDE+ +        I  + D   R 
Sbjct: 371 IKKFGAGRFQVLLEQSENVTSSKFKRLKEKYDLELPDEKIKYLGEACGVIAGLYDSLERD 430

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---LVKGKLSKK 479
            Y+  +        +  + + +   +      + R+ +               +     K
Sbjct: 431 VYASTLAAECGLTKEVVLDKVAAIRKSRFGRQKKREWRDIQSGRAAPPDRLNPESAKYPK 490

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +  E  ++  L  +P  L+    ++    +  +  ++L+  +               ++
Sbjct: 491 EAAAEEGIIGFLCKNPDYLEYLLGKIQPGDFPTSWNKRLFELIVDKIQNNLPIELSFFNE 550

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L     G     L R    +    +  +     +  +   +             ++++E
Sbjct: 551 QLSPDEMGRFSGILARFRELSNTKQSLDDYIDVLLKHKNRLKDEDRFDLPVDAYEKRRQE 610

Query: 598 IEK 600
           + K
Sbjct: 611 LLK 613


>gi|325843418|ref|ZP_08167976.1| DNA primase [Turicibacter sp. HGF1]
 gi|325489340|gb|EGC91714.1| DNA primase [Turicibacter sp. HGF1]
          Length = 598

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 150/633 (23%), Positives = 278/633 (43%), Gaps = 43/633 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++    ++    I +++  YV   +   N     Y   CPFH E TPSF  +  KG 
Sbjct: 5   RIPQELFDQVIAQSDIVDVVSDYVQLTKAGKN-----YKGLCPFHGENTPSFVVSPDKGI 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL 120
           Y CF C   G+ +SF+S L   S+ +++ +LA  AG+    V       +     +   L
Sbjct: 60  YKCFGCGEGGNVISFISQLEAISYPQAILKLAQRAGIQTDLVASLSQSTQNSKYKNEYDL 119

Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +E +  F+H+ L + +  K    YL +RG+ +  IE F +G +P    +L + L    FS
Sbjct: 120 LEFSKGFYHYYLNHTKEGKIALEYLTKRGMSAEMIEQFGIGLSPSYSDALVKTLANNQFS 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
                   L +  +++   YDRF++R++FPI    G+V+ F GR   +G++   KY+NSP
Sbjct: 180 --LPQATQLGLLNEHNGQYYDRFKSRIMFPIFDKVGKVVGFSGRVFLEGDTHLGKYVNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ LF KGK +YN   A   +++  R          ++L EG++DV+S  +AG+   V++
Sbjct: 238 ESPLFQKGKLIYNLHEAKLAIRRHNR----------VLLFEGFLDVISAVEAGISESVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTA TE   R L +L+  I++C+DGD  GL AA KAI +    +     V+ V +    
Sbjct: 288 MGTAFTEDHGRELRRLTDHIIICYDGDKAGLAAANKAIPI---LMSQNFIVSVVEIPSKM 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD FI+  G  AF KL+ +++P +D  ++      +      R + +  + +    ++ 
Sbjct: 345 DPDEFIKTNGAEAFSKLVDQAIPAIDYQYRYIKRQFNLEFVSHRDQFKRAIYHLAYSLQS 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             L+    + +   +    Q  + E +       KN    + K    ++ +  L   K  
Sbjct: 405 PTLQELILKKLAQDISIGEQSILQEFASGKSQVYKNTNINNNKNEMSQMRRHHLRDTK-- 462

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  L+  ++    +  +  +EL     ++   + +  ++   +   +    +  
Sbjct: 463 --YDRSEKMLIHYMLKDRRVALQVEKELNGY-LNDPTRRNIVLYILDYYTVHETMNLQYF 519

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              + E     +   +              E           + L L  +  +   Q E+
Sbjct: 520 LNWIDEALVKPITDII-----------FECETLPPLTNDNVIRDLILVVKEYVYKAQMEQ 568

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           ++KQI++ T   E      L+  ++++  Q  +
Sbjct: 569 LKKQISEATLDHEK---LELLGKVNQLKQQFGK 598


>gi|182418406|ref|ZP_02949700.1| DNA primase [Clostridium butyricum 5521]
 gi|237666631|ref|ZP_04526616.1| putative DNA primase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377788|gb|EDT75332.1| DNA primase [Clostridium butyricum 5521]
 gi|237657830|gb|EEP55385.1| putative DNA primase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 591

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 166/632 (26%), Positives = 288/632 (45%), Gaps = 41/632 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + I+ +     I ++I + V   +   N     Y   CPFH++K+PS   +  K 
Sbjct: 1   MQIREEVIERIRQDNDIVDIISENVRLKKSGRN-----YVGLCPFHNDKSPSLSVSQDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y CFSC   G+ ++F+      +F E+ + LA  AG+PL + + K  +  K +  L ++
Sbjct: 56  IYKCFSCGEAGNVITFVMKYKKLTFYEASKYLADKAGIPLELGNAKESQITKKKELLYKV 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A  ++ ++L+         Y  +RGI    I+ F LGYA D  + L  +L++KGF+E
Sbjct: 116 NTEAARYYFYNLQRT--SFAKEYFLKRGIREEVIKRFGLGYAQDRWHDLIMYLKKKGFNE 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             ++EAGL++  +    +YDRFRNR++FP+   RG+VI FGGR L      KYLNSPET+
Sbjct: 174 NLLLEAGLILKSEKKGNTYDRFRNRVMFPVFDVRGKVIGFGGRVL-DDSKPKYLNSPETV 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG NLY    A             +    +II+VEGYMD++SL Q G+ N V+SLGT
Sbjct: 233 VFHKGTNLYGLNFATK----------NKLEQDYIIIVEGYMDLISLHQHGITNTVASLGT 282

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q RLL +   ++++ +D D  G  A  + +++       G  V  + + +G+DPD
Sbjct: 283 ALTINQARLLKRYVNKVIISYDADVAGQTATLRGLEI---LRHAGLDVKVLKVPQGKDPD 339

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            F+R  GK AF +L+  +LPL++   K+  E  +    +E  +        +  + +   
Sbjct: 340 EFVRNNGKDAFLRLVDNALPLIEYRIKKAAEGINLRDNNELVKYGEKFAEILADL-NPIE 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + I +      Q      S      +K     ++K            K  +    
Sbjct: 399 KDVYIKKISEETSIKEQAIYDLLSQVMAKDQKENNFMNKKA-------DYGTKLYVEPGY 451

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  L+  +       QE  + +    +  +   K++S +     + K      I   
Sbjct: 452 LKAERTLIKLMFKE-EYFQELNELIKVGDFVLDSHNKIYSLIL----QGKNEDTSNIISY 506

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L  R       +  +++ +          +   V + Y Q +  YK  + +   K+  ++
Sbjct: 507 LESRCDD---VESSKELINIKEQEILEFTDKDRVIKDYMQEVQSYKLKKKIEDLKK--KQ 561

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            I  +  +G+ ++T  +   L  +   + + E
Sbjct: 562 SI--LEKEGKFQETIEIAMELTRLTKSLKRGE 591


>gi|323529250|ref|YP_004231402.1| DNA primase [Burkholderia sp. CCGE1001]
 gi|323386252|gb|ADX58342.1| DNA primase [Burkholderia sp. CCGE1001]
          Length = 622

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 169/653 (25%), Positives = 280/653 (42%), Gaps = 56/653 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPPSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-------- 114
           +CF C   G  + FL   +G SF E+V  LA   G+ +P                     
Sbjct: 57  HCFGCGAHGTAIGFLMEHVGASFPEAVNELAQSVGLTVPNEPSPGYGGGAGGGYSPAASK 116

Query: 115 ---TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---S 168
              T L  +++ A D++   L+ A       YL +RG+       F LGYAPD      +
Sbjct: 117 AVTTALSDVMQTACDYYRKQLRGAPGA--IQYLKKRGLTGEIAARFGLGYAPDGWQNLEA 174

Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
              + R     E  ++      DG      YDRFR R++FPIR+ +GQVI FGGR L  G
Sbjct: 175 AFPNYRDDSLVESGLVIVSEKADGQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVLDGG 234

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
           E  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L Q
Sbjct: 235 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQGYVLVVEGYMDVVALAQ 283

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
            G QN V++LGTA T   ++ L + +  ++  FDGD  G RAA +A+D  L H      +
Sbjct: 284 LGFQNAVATLGTACTPVHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRTI 343

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
            F+ L    DPDS++R +G  AF + +  ++PL   +       +  + P+ +A      
Sbjct: 344 RFLFLPAEHDPDSYVREFGTEAFAEQVERAMPLSQFMLNEVLAGKELDQPEGKARALFDA 403

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           K  +  +    LR        DRL   F +         R                    
Sbjct: 404 KPLLQALPANALRAQIMHMFADRLDVPFDEVAALCEVDARIA---------------AAA 448

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            S    K  +  +  E   L  L+ +P  +    +E            +L+  + +    
Sbjct: 449 RSAPARKDRRSVTGIEEKTLRNLVMYPRTVAVLDEEAEQALLTVTRHGELFEEVTTHARA 508

Query: 529 QKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQA 581
                  ++   L   G     F E+ +++     +    L     +A +++ R+  ++ 
Sbjct: 509 LGESAEFQLLSDLLRNGANAPTFEEIFRKILDYDENVRDLLLKDPEDATVIEERREQERI 568

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +    +  +L  + +    ++ Q++ +     T    + L E++ +   ++ Q
Sbjct: 569 VGEELKAAILKMRYDAYCDRLEQLSRQSRH--TPEEFAELAELNRKRADMKRQ 619


>gi|293376343|ref|ZP_06622580.1| DNA primase [Turicibacter sanguinis PC909]
 gi|292645032|gb|EFF63105.1| DNA primase [Turicibacter sanguinis PC909]
          Length = 598

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 150/633 (23%), Positives = 278/633 (43%), Gaps = 43/633 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++    ++    I +++  YV   +   N     Y   CPFH E TPSF  +  KG 
Sbjct: 5   RIPQELFDQVIAQSDIVDVVSDYVQLTKAGKN-----YKGLCPFHGENTPSFVVSPDKGI 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL 120
           Y CF C   G+ +SF+S L   S+ +++ +LA  AG+    V       +     +   L
Sbjct: 60  YKCFGCGEGGNVISFISQLEAISYPQAILKLAKRAGIQTDLVASLSQSTQNSKYKNEYDL 119

Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +E +  F+H+ L + +  K    YL +RG+ +  IE F +G +P    +L + L    FS
Sbjct: 120 LEFSKGFYHYYLNHTKEGKIALEYLTKRGMSAEMIEQFGIGLSPSYSDALVKTLANNQFS 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
                   L +  +++   YDRF++R++FPI    G+V+ F GR   +G++   KY+NSP
Sbjct: 180 --LPQATQLGLLNEHNGQYYDRFKSRIMFPIFDKVGKVVGFSGRVFLEGDTHLGKYVNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ LF KGK +YN   A   +++  R          ++L EG++DV+S  +AG+   V++
Sbjct: 238 ESPLFQKGKLIYNLHEAKLAIRRHNR----------VLLFEGFLDVISAVEAGISESVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTA TE   R L +L+  I++C+DGD  GL AA KAI +    +     V+ V +    
Sbjct: 288 MGTAFTEDHGRELRRLTDHIIICYDGDKAGLAAANKAIPI---LMSQNFIVSVVEIPSKM 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD FI+  G  AF KL+ +++P +D  ++      +      R + +  + +    ++ 
Sbjct: 345 DPDEFIKTNGAEAFSKLVDQAIPAIDYQYRYIKRQFNLEFVSHRDQFKRAIYHLAYSLQS 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             L+    + +   +    Q  + E +       KN    + K    ++ +  L   K  
Sbjct: 405 PTLQELILKKLAQDISIGEQSILQEFASGKSQVYKNTNINNNKNEMSQMRRHHLRDTK-- 462

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  L+  ++    +  +  +EL     ++   + +  ++   +   +    +  
Sbjct: 463 --YDRSEKMLIHYMLKDRRVALQVEKELNGY-LNDPTRRNIVLYILDYYTVHETMNLQYF 519

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              + E     +   +              E           + L L  +  +   Q E+
Sbjct: 520 LNWIDEALVKPITDII-----------FECETLPPLTNDNVIRDLILVVKEYVYKAQMEQ 568

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           ++KQI++ T   E      L+  ++++  Q  +
Sbjct: 569 LKKQISEATLDHEK---LELLGKVNQLKQQFGK 598


>gi|308270754|emb|CBX27364.1| hypothetical protein N47_H21860 [uncultured Desulfobacterium sp.]
          Length = 623

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 156/648 (24%), Positives = 291/648 (44%), Gaps = 51/648 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I ++     I ++I + V   +   N     Y   CPFH EKTPSF  N  K  +
Sbjct: 8   IPEEKIFEIKNAADIVDIISESVLLKKSGRN-----YVGLCPFHSEKTPSFTVNYEKQIF 62

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           YCF C   G+  ++L+   G +F E+V+ +A   G+ +PV    P+  K+   +  +  +
Sbjct: 63  YCFGCGAGGNVFAYLTKKEGFTFPEAVKYVAGKYGIDIPVEKISPEKHKEISEKDSIFSI 122

Query: 121 IEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            + A DFF    L     K+   YL +R I  + I  + LGYAPD    L  +  +K   
Sbjct: 123 NKQAMDFFKGCLLNEDNGKKALEYLKKRKISDNTIRDYHLGYAPDGWNVLLNYFAKKNVL 182

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              + +AGL+I  + S   YDRFRNR+IFPI     QVI FGGR +      KYLNSPET
Sbjct: 183 TSMLEKAGLIIRKNKSEGFYDRFRNRIIFPIFDVNSQVIGFGGRVM-DDSLPKYLNSPET 241

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           I+F+K ++LY    A +  +           +  + +VEGY D+LSL + G+ N V++LG
Sbjct: 242 IVFNKSQSLYGLNMARSECR----------ITETVFIVEGYFDLLSLHENGIINSVATLG 291

Query: 300 TALTEYQLRLLWKL---SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           TA++   +++L  +     +I+L +D DD G++AA ++I++             ++L  G
Sbjct: 292 TAISSEHVKILRAIVGKDGKIILVYDSDDAGIKAAQRSIEI---FDKGFADARILVLPSG 348

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPDS++  +G+ AF+  ++ +   V  L     +     + + +  +   LKN ++ I+
Sbjct: 349 YDPDSYLVKFGQQAFKNAVLSAQGTVSFLINSAIKKY-GLSVEGKIHIVSELKNTLSSIE 407

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSG------YGRYWKKNARHRDQKGPSQRLMQSS 470
           D   R  Y + + +++                     +Y  K+  +     P      S 
Sbjct: 408 DNVARALYIRELSEKINIDESALHERVRETLSGITLNKYINKSDSNTISDNPDVAGYDSE 467

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
               +  ++ +  E  ++  ++    ++ E  +      + ++ L+ + + +        
Sbjct: 468 NSIIENRQRGTRLERQIITMMLQFSEMVPEIIKRDLLSGFTDDILKSIGNAIIDQ----- 522

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                   Q L E    + +   D   +++ +   + +  + D +      L L K+F  
Sbjct: 523 --------QTLPEPNLRDAIPVFDNNEKNSIVAFLSIKDEVWDNKS----CLELIKQFEY 570

Query: 591 LSRQKEEIE-KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           + ++ ++   K+I Q     + +    L+    ++  +  +  S +A+
Sbjct: 571 IYKRNKDTSIKKIKQAEETNDEKLLLELLRA-KQIQAKNKRNSSLKAL 617


>gi|237748837|ref|ZP_04579317.1| DNA primase [Oxalobacter formigenes OXCC13]
 gi|229380199|gb|EEO30290.1| DNA primase [Oxalobacter formigenes OXCC13]
          Length = 599

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 177/643 (27%), Positives = 294/643 (45%), Gaps = 64/643 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI+DLL  + I  ++G +V   +   N +       CPFH EK+PSF  +  K FY
Sbjct: 2   IPQSFIQDLLNRVDIVEVVGNHVQLKKAGANLL-----GLCPFHTEKSPSFTVSPVKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-----PKIEKKEKIQTDL 117
           +CF C   G  ++FL    G SF+E+V+ LA   G+ +P  +      +  KK+     L
Sbjct: 57  HCFGCGRNGSAITFLMEHSGLSFVEAVEELAGSVGMTVPEDETRIPPGERAKKQAKTLAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             ++  A+ F+   LK         YL +RG+       F LGYAP++R SL+       
Sbjct: 117 TEVMTQASRFYRQQLKK--APEAIDYLKKRGVTGEIALRFGLGYAPEARDSLKNGFEDYR 174

Query: 178 FSEEKIIEAGLLID----GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            SE +     +          S+  YDRFR+R++FPIR++RGQVI FGGR L KGE  KY
Sbjct: 175 ASELEEAGLVIEKQGDEAFHTSSKRYDRFRDRIMFPIRNTRGQVIGFGGRILEKGEP-KY 233

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET LF KG  LY  F A   ++           S ++++VEGYMDV++L Q G   
Sbjct: 234 LNSPETPLFQKGNELYGLFEARQAIR----------ESGYVLVVEGYMDVVALAQLGFPQ 283

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V++LGTA T  Q++ L + +  ++  FDGD  G  AA +A++  L  +     V F+ L
Sbjct: 284 AVATLGTACTPVQVQKLMRQTDSVIFSFDGDAAGRGAARRALEASLPLVSDTKGVGFLFL 343

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPDS++R +G  AF+ L+ +++PL + L +    + + NT + RA  +   K+   
Sbjct: 344 PPEHDPDSYVREFGPEAFDALVKKAMPLSEFLLEEIVGDNNLNTLEGRARAQHTAKSLCA 403

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +    LR    +    RL Q+ Q    E   +  + K   + R  +  + R     L  
Sbjct: 404 SLTPSALRLQILR----RLAQITQTPDGELETFLGFSKPVVQTRRIQARAPRPPVVGL-- 457

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQY-QELADIRYDNNELQKLWSFLFSDFVE-QKY 531
                     E  +L  L+  P   +E    ++  I+  + +  +L   + + +    + 
Sbjct: 458 ----------ERQVLRLLMMFPRFGEELSPDDIDTIKGFSPDQGELLMAILNAYGVMGEQ 507

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                + + L   G        ++ V++        E  +++++   +Q      + R+L
Sbjct: 508 ANLAALVEHLRLDGVD-----CEQLVQETVGQEFEAEPALLELKGAVRQI-----KLRVL 557

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           S + E++         K             +E+  Q   ++ +
Sbjct: 558 SSELEKLFSSSLTTEEKN---------RRYYELKQQQETLQKE 591


>gi|288927429|ref|ZP_06421276.1| DNA primase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330263|gb|EFC68847.1| DNA primase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 660

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 150/683 (21%), Positives = 275/683 (40%), Gaps = 71/683 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  I+ +     I +++ ++V   +   N     Y   CPFH+E+TPSF  + ++G  
Sbjct: 2   IDRATIEKIQEAANIVDVVSEFVTLRKAGAN-----YKGLCPFHNERTPSFMVSPARGIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   G  +SF+      ++ E+++ LA    + +          +++  +  +  +
Sbjct: 57  HCFGCGKGGTPVSFIMEHEQMTYPEALRWLANKYHIEIKERELSDDERREQNERESMFIV 116

Query: 121 IEVATDFFHHSLKNARDK--RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A   F  +L N  D       Y   RG     +  F+LG+  + R  L      KG+
Sbjct: 117 NEWAAKHFEDTLHNNVDGLAIGMQYFRSRGFRDDIVRKFRLGFDLNDRELLARTAIDKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
           + E +++ GL    D+     DRF  R+IFP     G+V+ FGGR L    KG   KY+N
Sbjct: 177 NVEFLVKTGLCYRTDDG-RYVDRFAGRVIFPWFGVSGKVVGFGGRLLDSRTKGVQQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP++ ++HK   LY  F     + K             + +VEGY DV+S+ Q GV+NVV
Sbjct: 236 SPDSDIYHKDHELYGIFQGKKAIAK----------EDCVYMVEGYTDVVSMHQCGVENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ +Q+  L + +  IVL +DGD  G+ AA +  D+    L  G  V  +L   
Sbjct: 286 ANSGTALSIHQIHTLHRFTSNIVLLYDGDAAGIHAALRGTDM---LLAEGMNVKVLLFPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +    F K I ++         R   +   +    R+E    +   ++ I
Sbjct: 343 GDDPDSFARKHNAEEFRKYIADNQTDFIQFKTRVLLDGVTDPA-RRSEAISSIVQSVSVI 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR---LMQSSLV 472
            +Q LR  Y      RL       I   + Y R  ++       +   +      + ++ 
Sbjct: 402 PNQILRDTYLHDCAQRLGVAETTLINSMNRYIRESRERRSTETSRAVQESMETTPRPTIQ 461

Query: 473 KGKLSKKPSLREAALLLTLINHPA--ILQEQYQEL------------------ADIRYDN 512
                ++ +  E  L+  ++ +    +L+    E                    ++ + +
Sbjct: 462 TVTPLQQAAKVERMLVEQVVKYGERIVLRNVEDEDGNLLNLTVAQFIQYDFMQDELAFQH 521

Query: 513 NELQKLWSFLFS-----------DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
               ++                  FV  +     ++   LC   +  L  +L +      
Sbjct: 522 PLFNRILQEAAERSVYPDFKAEPYFVHHEDIELSKLATELCMDPYQYL--KLKQPEPTHP 579

Query: 562 LWSATTEANIVDVRQGYQQA---LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
           L          +     +Q    L L  R   +  + + ++ +IAQ  +  + EK   L+
Sbjct: 580 LDEEEKRLKEKEKEDELRQRTVHLLLDFRLDYVEHRLKTLQTEIAQAAS--DPEKLMQLM 637

Query: 619 SILHE---VHIQIHQIESQEAMI 638
           +   +   +  ++ +    E ++
Sbjct: 638 AEFKDMQTIRNELARRLGSEILV 660


>gi|85860025|ref|YP_462227.1| DNA primase [Syntrophus aciditrophicus SB]
 gi|85723116|gb|ABC78059.1| DNA primase [Syntrophus aciditrophicus SB]
          Length = 594

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 162/633 (25%), Positives = 279/633 (44%), Gaps = 50/633 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
           P D I ++   I I  LI +Y+   +   N     +   CPFH+EKTPSF  N  K  YY
Sbjct: 7   PGDKIAEIKSRIDIVELISEYISLKKAGKN-----FLGLCPFHNEKTPSFTVNREKQMYY 61

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRLI 121
           CF C  KGD  +FL  L   +F ++++ LA   GV LP    + + K +   +  +I++ 
Sbjct: 62  CFGCGEKGDVFAFLMRLHNTTFPDTLKLLARRTGVILPTSSFRGDGKSQLNAREQIIQIN 121

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           ++A  ++  +L +   K    YL ERG+    IE+F LGYA D    LR HL +K  S +
Sbjct: 122 QIAAAYYKDNLFSPGGKAASSYLKERGLKESTIEVFSLGYALDGWRYLRNHLERKKQSLK 181

Query: 182 KIIEAGLLI-DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
              EAGL++   D     YDRFRNRL+FP++   G++IAFGGR L      KYLNSPE+ 
Sbjct: 182 MAGEAGLIVAKDDRPDVLYDRFRNRLMFPVKDVDGRIIAFGGRIL-GDGEPKYLNSPESP 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
            + KG+ LY    A   +++            ++ILVEGY D++ L  AG++NVV++LGT
Sbjct: 241 AYIKGRQLYGLNLAKEEIRR----------CGYVILVEGYFDLIVLWNAGIKNVVATLGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT+  + L+ + + ++ + FD D+ G +A  +++++ +           V+L  G DPD
Sbjct: 291 ALTKDHVALIRRYTDQVAITFDSDEAGKKALARSVEMFIAAH---MDARAVVLPEGLDPD 347

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            F+R YG  A ++++  +  +VD   +        N+ +ER          I  I+D   
Sbjct: 348 DFVRRYGGEALKRMVEGAPSIVDYYIENAIGRG--NSFEERGGAAARAAAFITGIQDVID 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  + + + ++L         E     R   +               +      +     
Sbjct: 406 RNLFIKRVAEKLGIDQDILKKEVQRRLRSNAR--------------KEFLTPVQQREAAY 451

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ--KYFLPEEIH 538
           S  E  ++  ++ +P ++       A   + N +L+ +        V +           
Sbjct: 452 SGLELNMIHLMMEYPDVIPSILSSKAMEYFINRDLRLIGQSWIDYAVNETVNPGDAVSFI 511

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           Q+L      ++  +L  +                +        +    + R    Q + I
Sbjct: 512 QKLDNPDIEDIFLRLFVKGSPFQ----------KEQLDSITSDMIRQVKRRWYKEQHKNI 561

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           + ++    A G+      L+     +  +  ++
Sbjct: 562 KNRLLNAQASGDQALGRELLKEKERLMREEREL 594


>gi|16272476|ref|NP_438690.1| DNA primase [Haemophilus influenzae Rd KW20]
 gi|1172619|sp|Q08346|PRIM_HAEIN RecName: Full=DNA primase
 gi|1573516|gb|AAC22189.1| DNA primase (dnaG) [Haemophilus influenzae Rd KW20]
          Length = 593

 Score =  346 bits (888), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 172/634 (27%), Positives = 289/634 (45%), Gaps = 55/634 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SFL       FIE+++ LAA+AG+ +P         K +   + + +
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRVNHSGKPQANYQTKRN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L++    F+ + L    + +   YL +RG+    IE F++G+ P++  ++       
Sbjct: 119 LYELMQEIATFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              ++K+IE G+L   D     YD+FRNR++FPIR  RG+ +AFGGR L   E  KYLNS
Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PETI +HKGK LY  + AL             +    +++VEGYMDV++L Q GV   V+
Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGT+ T  Q++L+ + + ++V C+DGD  G  AA++A++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTSTTSEQIQLILRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           E+PD++IR YGK  FE+ I  +  L + ++   +    F+T + R +L       I+ I 
Sbjct: 345 EEPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR      +  +L    Q  +              +        +  M         
Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPM--------- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     ++  L+ +P +++   +             ++   L +   +++     +
Sbjct: 456 --------RMVISLLMQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +      +   L+ L                +  D+   + Q      R   +   + 
Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +IE  IA+   +G   +   ++  L     Q  +
Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587


>gi|134292972|ref|YP_001116708.1| DNA primase [Burkholderia vietnamiensis G4]
 gi|134136129|gb|ABO57243.1| DNA primase [Burkholderia vietnamiensis G4]
          Length = 623

 Score =  346 bits (888), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 174/655 (26%), Positives = 276/655 (42%), Gaps = 64/655 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------------DPKIEKK 110
           +CF C   G  + FL    G +F E+VQ LA   G+ +P              D      
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGAGGGGGDYPAPVS 116

Query: 111 EKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY--- 167
           + + T L  ++ VA D++   L+         YL  RG+       F LGYAPD      
Sbjct: 117 KSVATALSDVMSVACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLE 174

Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
           S     R     E  ++      D   +A  YDRFR R++FPIR+ +GQVI FGGR L  
Sbjct: 175 SAFPDYRDDSLVESGLVIVSEKTDAQGAARRYDRFRERIMFPIRNVKGQVIGFGGRVLGS 234

Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
           GE  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L 
Sbjct: 235 GEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALA 283

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           Q G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A++  L H      
Sbjct: 284 QLGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRT 343

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
           + F+ L    DPDS++R +G  AF + +  ++PL   L       ++ + P+ RA+    
Sbjct: 344 IRFLFLPPEHDPDSYVREFGADAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFD 403

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
            K  +  +    LR        DRL   F++         R                   
Sbjct: 404 AKPLLQALPANALRAQIMHMFADRLHIPFEEVAALSEVDARIA---------------AA 448

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
                     ++ +  E   L TL+ +P I      E          + +L++ +     
Sbjct: 449 PRQAPARSERRRVTDSEKRALRTLVMYPRIATALDDEQLATLRALPRIGELFAEVAEHAR 508

Query: 528 EQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ 579
                     L + +        + E+ +++   D  VRD  L +   E      R+  +
Sbjct: 509 ALGDGAEFRLLSDVLRASSNSATYDEIFREILDYDENVRDLLLQNPEDETVFERQREQER 568

Query: 580 ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                 QA  L  R+     + + + +Q        E  +   L     ++  ++
Sbjct: 569 IAGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELTELTELNQQRTDMKRRL 621


>gi|269958879|ref|YP_003328668.1| DNA primase [Anaplasma centrale str. Israel]
 gi|269848710|gb|ACZ49354.1| DNA primase [Anaplasma centrale str. Israel]
          Length = 607

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 182/631 (28%), Positives = 296/631 (46%), Gaps = 50/631 (7%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +   + + +++ + +   +R  N     Y   CPFH EKTPSFH N S   +YCF C V 
Sbjct: 14  IREKVRLLDVVSKRIKLIKRGNNQ----YVGLCPFHAEKTPSFHVNCSNDMFYCFGCGVH 69

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
           GD + F+S + G SF+E+++ LA + GV LP    + E        L  L++ A  +F  
Sbjct: 70  GDVVQFVSDIDGLSFMEAIEYLAQVYGVSLPAKSGRGEA-----DSLYELMDYAARWFVE 124

Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190
            L  ++   +  YL  R ID   +  F+LGY P S   +R          EK+ +AGLL 
Sbjct: 125 QL--SKSPAVLAYLKARSIDDRTVRKFRLGYVPVS--GIRTCFASSHIGFEKVRDAGLLT 180

Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250
                    D   NRL+FPI S+ G+VIAFGGR++S  ++ KYLNS E +LF K ++LY 
Sbjct: 181 K-----NLQDCLYNRLVFPICSATGRVIAFGGRSVSDRQTPKYLNSAENVLFKKRESLYG 235

Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310
              AL   +K  R          II VEGYMDVL L Q G+ NVV  LGTA+TE  LR +
Sbjct: 236 LHLALASAKKLGR----------IIAVEGYMDVLILSQLGISNVVGLLGTAMTEAHLRYM 285

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
           W + P IV+  DGDD G+ A+ K   L L  +  G  V FV+   G+DP       G  +
Sbjct: 286 WDVVPEIVVWMDGDDAGVNASIKIAHLALSIMKSGQSVRFVISPPGKDPYDVCVSSGPDS 345

Query: 371 FEKLIVESLPLVDMLWKRETENRSFN-----TPDERAELEIHLKNCINHIKDQKLRYYYS 425
            + L+  +  L + +W  E    +        P++   LE  ++   + I+D  +  YY 
Sbjct: 346 AQALVEHAKLLSEFVWDHELARANIPSSGKIMPEQCMVLERRIQEYTSKIQDAHIAKYYR 405

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
                +++ L      ++ G G     +AR  +Q   S RL   SL +    +   +R  
Sbjct: 406 NFFYQQIKAL---QREQYHGKGGTSHGSARAIEQGLKSSRLGGVSL-QACAGENYQMR-- 459

Query: 486 ALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLPEEIHQRLC 542
            ++  ++  P +L +   +++ A + +    +Q L   +        +     ++ + LC
Sbjct: 460 -VIYAIVECPKLLYDVTVFEQFASLDFTG-GMQALQQHIVDIREMHGEELSKADLVRELC 517

Query: 543 E--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                F ++L+ +  ++   G      + +  DV +  ++         +LS+Q  EI++
Sbjct: 518 SRRADFEQVLRSIREKMSAIGCTFEVKDGSDGDVEKRARREWEKL----MLSKQLGEIQE 573

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           QI ++  +G  +    L     EV  ++  +
Sbjct: 574 QIVKLRLEGRYDVALNLSEHAREVDDKLRSL 604


>gi|307726544|ref|YP_003909757.1| DNA primase [Burkholderia sp. CCGE1003]
 gi|307587069|gb|ADN60466.1| DNA primase [Burkholderia sp. CCGE1003]
          Length = 622

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 168/653 (25%), Positives = 282/653 (43%), Gaps = 56/653 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPPSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111
           +CF C   G  + FL   +G SF E+V  LA   G+ +P                    +
Sbjct: 57  HCFGCGAHGTAIGFLMEHVGASFPEAVNELAQSVGLTVPNEPSPGYGGGASGGYSPAASK 116

Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---S 168
            + T L  +++ A D++   L+         YL +RG+       F LGYAPD      +
Sbjct: 117 AVTTALSDVMQTACDYYRKQLRG--APAAIQYLKKRGLTGEIAARFGLGYAPDGWQNLEA 174

Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
              + R     E  ++      DG      YDRFR R++FPIR+ +GQVI FGGR L  G
Sbjct: 175 AFPNYRDDALVESGLVIVSEKSDGQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVLDGG 234

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
           E  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L Q
Sbjct: 235 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQHYVLVVEGYMDVVALAQ 283

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
            G QN V++LGTA T   ++ L + +  ++  FDGD  G RAA +A+D  L H      +
Sbjct: 284 LGFQNAVATLGTACTPVHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRTI 343

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
            F+ L    DPDS++R +G  AF + +  ++PL   +       +  + P+ +A      
Sbjct: 344 RFLFLPAEHDPDSYVREFGTAAFAEQVERAMPLSQFMLNEVLAGKELDQPEGKARALFDA 403

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           K  +  +    LR        DRL   F +         R                    
Sbjct: 404 KPLLQALPANALRAQIMHMFADRLDVPFDEVAALCEVDSRIA---------------AAA 448

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            S    K  +  +  E   L  L+ +P  +    +E            +L+  + +    
Sbjct: 449 RSAPARKDRRSVTGIEEKTLRNLVMYPRTVAVLDEEAEQALLTVTRHGELFEEVTTHARA 508

Query: 529 QKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQA 581
                  ++   L   G     F E+ +++     +    L     +A +++ R+  ++ 
Sbjct: 509 LGDSAEFQLLSDLLRNGANAPTFEEIFRKILDYDENVRDLLLKDPEDATVIEERREQERI 568

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +    +  +L  + +   +++ Q++ +     T    + L E++ +   ++ Q
Sbjct: 569 VGEELKAAILKMRYDAYCERLEQLSRQSRH--TPEEFAELAELNRKRADMKRQ 619


>gi|50954566|ref|YP_061854.1| DNA primase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951048|gb|AAT88749.1| DNA primase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 620

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 152/647 (23%), Positives = 258/647 (39%), Gaps = 46/647 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              +  I+++     I+++IG YV           G     CPFHDE++PSF+     G 
Sbjct: 4   RIRQSDIEEVKARTNIADIIGDYVSLKPGG----VGSLKGLCPFHDERSPSFNVRPGVGR 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIR 119
           Y+CF C   GD   FL  L   SF E+V+RLAA  G  L   +     +E    +  ++ 
Sbjct: 60  YHCFGCGEGGDVYEFLVKLDHVSFAEAVERLAARIGFQLHYEEGSGGPRESSGNRARILA 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A +FF  +L          +L ERG D+ A + F +GYAP S   L  HLR KGF+
Sbjct: 120 ANTAAEEFFAGTLGVPEADPGRRFLGERGFDAIAAQRFGVGYAPKSWDELTNHLRGKGFT 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
            ++++ AGL+         YDRFR RL++PIR   GQ I FG R L + ++  KYLN+PE
Sbjct: 180 PDELLAAGLVSQ--RDRGVYDRFRGRLVWPIRDVTGQTIGFGARRLLEDDNGPKYLNTPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K + LY    A   + +             +++VEGY DV++   AG+   V++ 
Sbjct: 238 TPVYKKTQVLYGLDLAKRDIARD----------DQVVVVEGYTDVMACHLAGITTAVATC 287

Query: 299 GTALTEYQLRLLWKLSPR------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           GTA     ++ + ++         ++  FD D  G +AA +A            +    +
Sbjct: 288 GTAFGVDHIKTIRRVMVDDSSSGSVIFTFDPDAAGQKAAARAFGEERRFSA---QTYVAV 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP       G  A  ++I    P+ + + ++  E    ++ + R          +
Sbjct: 345 GPDGLDPCDLRLAKGDDAVRRMIDGKKPMFEFMIRQVVERYDLDSVEGRTAALRAGAPIV 404

Query: 413 NHIKDQKLRYYYSQAIRDR----LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
             I+D   +  Y++ +       L+   +   +         + +               
Sbjct: 405 ATIRDPASQNGYARELARLSGAELEDALRAVRSAQLSGRGEQQSDQSAGMTAVRESAPAA 464

Query: 469 SSLVKGKLSKKPSLR-EAALLLTLINHP-AILQEQYQELADIRYDNNELQKLWSFLFSDF 526
             +V G     P+ R E   L+ L+  P  +  E+      + + N     +   + S  
Sbjct: 465 PIVVAGTAPADPTQRTERESLMVLLQLPGEVGSERAARALQVPFANPTHAVIRDAMASQL 524

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                    +  Q      +   +  L   V  AG   +        V  G         
Sbjct: 525 ATLGQPGWVDRVQAEVPTAYAPTVNALAVGVLHAG---SDPGRYARSVLDGLID------ 575

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             R L R+K  +  ++A+  A+ +AE    L   L  +  +  ++ S
Sbjct: 576 --RDLLREKAVLTARLARTDAQ-DAEHRRSLQIALASIDSERMRLRS 619


>gi|325518127|gb|EGC97913.1| DNA primase [Burkholderia sp. TJI49]
          Length = 625

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 173/657 (26%), Positives = 275/657 (41%), Gaps = 66/657 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------------DPKIE 108
           +CF C   G  + FL    G +F E+VQ LA   G+ +P                D    
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGGGGDYPAP 116

Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY- 167
             + + T L  ++  A D++   L+ A       YL  RG+       F LGYAPD    
Sbjct: 117 VSKSVATALSDVMSTACDYYRKQLRGATAA--IQYLKNRGLTGEIAARFGLGYAPDGWQN 174

Query: 168 --SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
             +     R     E  ++      D    A  YDRFR R++FPIR+ +GQVI FGGR L
Sbjct: 175 LEAAFPDYRDDALVEAGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVL 234

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
             GE  KYLNSPET LF+KG  LY  F A   ++             + ++VEGYMDV++
Sbjct: 235 GAGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYALVVEGYMDVVA 283

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           L Q G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A++  L H    
Sbjct: 284 LAQLGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADN 343

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             + F+ L    DPDS++R +G  AF + +  ++PL   L       ++ + P+ RA+  
Sbjct: 344 RTIRFLFLPPEHDPDSYVREFGAEAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKAL 403

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              K  +  +    LR        DRL   F++         R                 
Sbjct: 404 FDAKPLLQALPANALRAQIMHMFADRLDIPFEEVAGLSDVDARIA--------------- 448

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                       ++ +  E   L TL+ HP +  +   E          + +L++ +   
Sbjct: 449 AAPRQAPARSDRRRVTDSEKRALRTLVMHPRLASQLDDEQIATLRALPRIGELFAEVVEH 508

Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577
                       L + +        + E+ +++   D  VRD  L +   E      R+ 
Sbjct: 509 ARALGEGAEFRLLSDVLRTSSNSATYEEIFREILDYDENVRDLLLQNPEDETVSERQREQ 568

Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +      QA  L  R+     + + + +Q        E  +   L     ++  ++
Sbjct: 569 ERIAGEELQAAVLKVRYDACCDRLDRLARQ--SAFTPEELAELKHLNEQRTDMKRRL 623


>gi|307706484|ref|ZP_07643292.1| DNA primase [Streptococcus mitis SK321]
 gi|307618124|gb|EFN97283.1| DNA primase [Streptococcus mitis SK321]
          Length = 586

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 151/629 (24%), Positives = 262/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G  FIE+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVPFIEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F++G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFRIGLAPPERNYLYQRLSGQYRD-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
            +++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 177 FLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSITA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P     Q ++   K     
Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQAQRQNRMEGISRP----TQITMPVTKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +D  E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LILNDYRLREDFSFDTPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEMSPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|167743534|ref|ZP_02416308.1| DNA primase [Burkholderia pseudomallei 14]
 gi|254186159|ref|ZP_04892677.1| DNA primase [Burkholderia pseudomallei Pasteur 52237]
 gi|157933845|gb|EDO89515.1| DNA primase [Burkholderia pseudomallei Pasteur 52237]
          Length = 624

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 172/656 (26%), Positives = 273/656 (41%), Gaps = 65/656 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111
           +CF C   G  + FL    G +F E+VQ LA   G+ +P             D       
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSPMRGGGGSSDGHAPPAA 116

Query: 112 KIQ--TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169
                T L  +++ A D++   L+         YL  RG+       F LGYAPD   +L
Sbjct: 117 SKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQNL 174

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSA---TSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
                             ++ +  ++      YDRFR R++FPIR+ +GQVI FGGR L 
Sbjct: 175 EAAFDDYRHDSLVGAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLD 234

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
            GE  KYLNSPET LF+KG  LY  F A   ++             + ++VEGYMDV++L
Sbjct: 235 GGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVAL 283

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
            Q G  N V++LGTA T   ++ L + +  +V  FDGD  G RAA +A++  L H     
Sbjct: 284 AQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNR 343

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
            + F+ L    DPDS++R +G  AF + +  ++PL   L    T  +  + P+ RA+   
Sbjct: 344 TIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALF 403

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             K  +  +    LR        DRLQ  F +         R                  
Sbjct: 404 DAKPLLQALPANALRAQIMHMFADRLQIPFDEVAALAEVDARIA---------------A 448

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
                      ++ +  E   L  L+ HP I      E          + +L+  +    
Sbjct: 449 PARQAPARNERRRVTESEKRALRNLVMHPRIAAAIDDESVATLRALPRIGELFDEVIGHA 508

Query: 527 VEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGY 578
                      L + +        + E+ +++   D  VRD    +  ++A    +R+  
Sbjct: 509 RALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDAAQEGLRERE 568

Query: 579 Q------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +      QA  L  R+     +   + K+     +  E  +   L   L ++  ++
Sbjct: 569 RIAGEELQAAVLKMRYDACCDRLNSLSKR--SAPSSEELAEIKDLHQNLADMKRRL 622


>gi|170719015|ref|YP_001784174.1| DNA primase [Haemophilus somnus 2336]
 gi|168827144|gb|ACA32515.1| DNA primase [Haemophilus somnus 2336]
          Length = 585

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 168/631 (26%), Positives = 284/631 (45%), Gaps = 56/631 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI D+L    I +LI   V   ++       DY ACCPFH EKTPSF  +  K F
Sbjct: 4   KIPHSFIDDILARTDIVDLIDSRVKLKKQGR-----DYQACCPFHHEKTPSFTVSPKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV----DPKIEKKEKIQTDL 117
           Y+CF CH  G+ +SFL       F+E+++ LA++ G+ +P      D K     K + +L
Sbjct: 59  YHCFGCHAHGNAISFLMEYDKLEFVEAIEELASLHGLEVPREKSTLDEKTRVSFKTKRNL 118

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             L++    F+   L      +   YL +RG+    I+ F++G++P       +      
Sbjct: 119 YELMQEIAKFYQEQLTQNIPAQN--YLQQRGLSIEIIQRFQIGFSPQQSSFFIKKFATNR 176

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNS 236
              +K+ + G++     S   +DRFR R+ FPIR  RG+VIAFGGR +++     KYLNS
Sbjct: 177 EEIQKLFDVGMVNKR-ESGELFDRFRQRVTFPIRDRRGRVIAFGGRIITQSDNRPKYLNS 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE++ +HKG  LY  F AL             +S   +++VEGYMDV++L Q GV   V+
Sbjct: 236 PESVTYHKGYELYGLFEALQI----------NDSPEMLVIVEGYMDVVALAQFGVDYAVA 285

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGTA T  QL+L ++ + +I+ C+DGD  G  AA++A++  L  L  G ++ F+ L   
Sbjct: 286 SLGTATTTEQLQLAFRSTEQIICCYDGDRAGRDAAWRALENALPLLEDGRQLKFIFLPEK 345

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDSFIR YGK  FE  I ++  L + L+   +    F++ + +A+L       I  + 
Sbjct: 346 EDPDSFIRQYGKEGFEDYIHQAQSLSEFLFNTLSAKVDFSSTEGKAKLASLAIPLIQKVP 405

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR         ++       +       +  +   +       +             
Sbjct: 406 GEMLRLSLRDMFGQKVGIFNPDKLDRLLSNQQQVEYKQKIPKTVKRTPM----------- 454

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     L+  L+ +  + +     L+ ++        L+  +     E       +
Sbjct: 455 --------RVLIALLLQNTNLAKIVPD-LSPLKVLQEPGLDLFEKIVILCRENVGIRAGQ 505

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +   +  + + L+ L               A   D  +   +   ++   +L+ ++ E
Sbjct: 506 ILEHWRDTEYSQALEILATW----------EHAVDDDKIEQEFRETLIHLYKQLVDKRIE 555

Query: 597 EI--EKQIAQVTAKGEAEKTAILISILHEVH 625
           E+  ++++  +T   + E  A L+S   E  
Sbjct: 556 ELIGQERMVGLTNDEKIE-LAQLLSKKQEKK 585


>gi|281426143|ref|ZP_06257056.1| DNA primase [Prevotella oris F0302]
 gi|281399719|gb|EFB30550.1| DNA primase [Prevotella oris F0302]
          Length = 647

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 148/670 (22%), Positives = 281/670 (41%), Gaps = 69/670 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  ++ +     I +++ ++V   +  +N     Y   CPFH+EKTPSF+ + ++G  
Sbjct: 2   IDRLTVERIKDAANIVDVVSEFVTLRKSGSN-----YKGLCPFHNEKTPSFYVSPARGTC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   G+ +SF+      ++ E+++ LA    + +         ++++  +  +  +
Sbjct: 57  HCFGCGKGGNPISFIMEHEQMTYPEALRWLANKYHIEIKERELTDDEKREQSERESMFII 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A+ +F   L N  D       Y   RG     I  FKLG+    R +L    RQKGF
Sbjct: 117 NEWASGYFEDILHNNVDGVAIGMQYFRTRGFRDDIIRKFKLGFDLPDRLTLGRTARQKGF 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
            +E +++ G+           DR+  R+IFP     G+V+ FGGR L    KG + KY+N
Sbjct: 177 QDEYLLKTGICYRN-ERGELVDRYSGRVIFPWIGISGKVVGFGGRVLDARTKGVNQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP++ ++HK   LY  + A   + K  R          + +VEGY DV+S+ Q G++NVV
Sbjct: 236 SPDSDIYHKDHELYGIYQAKKAIAKEDR----------VYMVEGYTDVISMHQCGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ +Q+  L + +  I L +DGD  G+ AA +  D+    L  G  +  +LL  
Sbjct: 286 ANSGTALSIHQIHTLHRFTANITLLYDGDAAGIHAALRGTDM---LLQEGMNLKVLLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            +DPDSF R +    F+  I +      + +K      +   P +R+E    +   I+ +
Sbjct: 343 NDDPDSFARKHTAEEFKDYIEQHATDF-IRFKTALLLDNETDPLKRSEAINSIVTSISMV 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA-------RHRDQKGPSQRLMQ 468
           ++  LR  Y      R+       IT+ +   R  K          +         +  Q
Sbjct: 402 QNPILRDTYLHDCSQRIGINEATLITQMNNMIRDRKATGSMTPTAVQPTVTGTQPLQANQ 461

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD--------------------- 507
           +++     +   S  E  +L  +I H   +   ++ + D                     
Sbjct: 462 NAIQSQSQANIESKAEQLMLQMIIKHGNRV--VFENIEDSNGKPLQLSIAEYFDYCLSAD 519

Query: 508 -IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            + +++    ++   +     ++ +                  + QL   + +     + 
Sbjct: 520 GLSFESPVYNQILKEVVEKGHDRSFDTEPYFVHH-----HDIHISQLAIHMTEERFKLSE 574

Query: 567 TEANIVDVRQGYQQALALYK--RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           ++    D      +A+ L    R   + +   E+++QIA+ +A    +    L++   E+
Sbjct: 575 SQQVKSDNESLRNRAIHLMLDFRMEYVEKHLRELKQQIAKASA----DNLMPLMTEYKEM 630

Query: 625 HIQIHQIESQ 634
               + +  Q
Sbjct: 631 TAIRNALAKQ 640


>gi|70726355|ref|YP_253269.1| DNA primase [Staphylococcus haemolyticus JCSC1435]
 gi|68447079|dbj|BAE04663.1| DNA primase [Staphylococcus haemolyticus JCSC1435]
          Length = 601

 Score =  346 bits (887), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 144/624 (23%), Positives = 264/624 (42%), Gaps = 34/624 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIEQSVINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLI 118
             +CF C   G+   F   +   SF+E+V+ L     + + + +      +       +I
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDLSFVEAVKELGERINISVDIGNSSDYTSQIASNDLTMI 115

Query: 119 RLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            + E+  +++ ++ LK    +    YL +RG     I+   +GYAP+  +   + L+QKG
Sbjct: 116 EMHELMHEYYQYALLKTVEGEEALNYLTKRGFTEELIKSRGIGYAPNHTHFCHDFLQQKG 175

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           +  E   EAGLL   + + + +DRFR+R++FP+ +++G+++ + GRT    +  KYLNSP
Sbjct: 176 YDIELAYEAGLLSRNEENFSYFDRFRDRIMFPLNNAQGRIVGYSGRT-YNNQEPKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +F K + LYN   A  +++K          +   IL+EG+MDV+    +G++ V++S
Sbjct: 235 ETPIFQKRRLLYNLDNARKHIRK----------NDEAILLEGFMDVIKSDSSGLKPVIAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTA+++  + +L KL+  I L FDGD  G  A    I      L  G  V  V L +  
Sbjct: 285 MGTAISDEHITVLKKLTSHITLMFDGDFAGQEAT---IKTGQHLLQQGFNVFVVQLPKDM 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +I  YG   F + +        +    + ++   N           +   I  +  
Sbjct: 342 DPDEYITKYGNEKFLEYVNNEKKSFIIYKVNKHKDEIANNDLAYERYLKEVTQDIALMNS 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           Q L+    + +            +      +Y        D +     +  +S       
Sbjct: 402 QILQNKIIKDVAHLFNVDSNTLNSNVLNQQQYIPSEPYINDYQSYDIEIQNNSNNLFSHL 461

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            K    E ALL   +N   +    +++L    +DN   ++++S L   + E   +   ++
Sbjct: 462 SKHESAERALLKHFMNDKDLFLNYHKQLESDDFDNQFFKRIYSVLEDFYAENDSYTISDM 521

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                     + +  LD             +       + Y   +   K    L     E
Sbjct: 522 ILYTDNDNLRDAIIALDNY--------DINQEPYDSEIEDYMNVINESKYGDTLE----E 569

Query: 598 IEKQIAQVTAKGEAEKTAILISIL 621
           +  ++ + +  G+ E     +  +
Sbjct: 570 LNHKLREASRLGDVELQKYYLEQI 593


>gi|289550667|ref|YP_003471571.1| DNA primase [Staphylococcus lugdunensis HKU09-01]
 gi|289180199|gb|ADC87444.1| DNA primase [Staphylococcus lugdunensis HKU09-01]
          Length = 604

 Score =  346 bits (887), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 144/634 (22%), Positives = 262/634 (41%), Gaps = 37/634 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIEQSVINEIKEKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP-KIEKKEKIQTDLIR 119
             +CF C   G+   F   +   SF+E+V+ L A   + + +  P +  +       +I 
Sbjct: 56  ICHCFGCKKGGNVFQFTQDIKDISFVEAVKELGARVNINVDIGTPSETPQIASDDLKMIE 115

Query: 120 LIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + E+   ++ ++ LK    +    YL +RG     I+   +GYAPD+ +   + L +  +
Sbjct: 116 MHELMQTYYQYALLKTVEGEEALNYLKQRGFTDELIQQRGIGYAPDNAHFCLDFLTKNDY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             E   EAGLL   + + + YDRFR+R++FP+ +++G+++ + GRT  + +  KYLNSPE
Sbjct: 176 DIELAYEAGLLSRNEENFSYYDRFRDRIMFPLNNAQGRIVGYSGRT-YRNQEPKYLNSPE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K + LYN   A   ++K          +  +IL+EG+MDV+    AG+++VV+S+
Sbjct: 235 TPIFQKRRLLYNLDYARKRIRK----------NDEVILLEGFMDVIKSDAAGLKHVVASM 284

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTAL++  +  L KL+  + L FDGD  G  AA K   +    L  G  V  + L    D
Sbjct: 285 GTALSQEHITFLKKLTSNVTLMFDGDFAGREAALKTGQV---LLQQGLNVYIIQLPNDMD 341

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I  YGK  F   +        +   +  ++   +               +  ++  
Sbjct: 342 PDEYIVKYGKEEFLNFVATEKKSFIVFKYKTKQDEIQHNDLAYERYLKEAIQDVAFVQSN 401

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYG----RYWKKNARHRDQKGPSQRLMQSSLVKG 474
            L+    Q +         +   E +        Y   N         +Q +    +   
Sbjct: 402 ILKNKIVQDVAGVFNIEANRLNNEIAQQSHSITEYDYDNYYSGAYFHDNQPMHAPQIDNF 461

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
               K    E  LL   +N           +    + N   ++++  L   + E   +  
Sbjct: 462 NHLNKREKAERGLLKHFMNDKDTFLNYAANINSQLFSNPSFKQIFEILKDFYAENDNYHI 521

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            +  Q        E++  LD             + N+       +  +A           
Sbjct: 522 SDFIQYTDSSDLREMMISLDNY-----------DLNLEPFDHEIEDYIATLMENND-EDS 569

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            E +  ++ +    G+ +     + ++ + + Q 
Sbjct: 570 IEILNHKLNEAQRTGDIDMVKYYLQMIVQKNQQR 603


>gi|241896071|ref|ZP_04783367.1| DNA primase [Weissella paramesenteroides ATCC 33313]
 gi|241870671|gb|EER74422.1| DNA primase [Weissella paramesenteroides ATCC 33313]
          Length = 621

 Score =  346 bits (887), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 146/644 (22%), Positives = 279/644 (43%), Gaps = 47/644 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ ++++   + I +++  YV   ++  N      +  CPFH+E+TPSF  N+ K  
Sbjct: 3   RIPQNLVEEIRERVNIVDVVSPYVQLKKQGRNL-----FGKCPFHEERTPSFSVNEEKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV---VDPKIEKKEKIQTDLI 118
           ++CFSC   G+  SFL  +   SF ++V ++A  AGV L      + +  + +     L 
Sbjct: 58  FHCFSCGRGGNVFSFLMEIENLSFPQAVAKVAPQAGVDLDEAYLDNDQNVQVDPEIKALR 117

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E AT  +HH L   A  +    YL  RG+D   I+ F LGYAP+    L ++ + + 
Sbjct: 118 ELYEEATKLYHHLLVNTASGEEALSYLTSRGLDEKTIDAFMLGYAPEG-NILYDYFQTQK 176

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNS 236
              + + ++ L ++  +  + +DRF NR++F IR S G  IAF GR L    +  KY+NS
Sbjct: 177 VDYQLLRKSELFVE-WSDGSLHDRFANRVLFTIRDSAGHPIAFSGRKLTQNDDEPKYINS 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE++LF+K   L+N   A + ++K             +IL EG+MDV++  QAGVQN V+
Sbjct: 236 PESLLFNKSAELFNLDLAKDTIKKK----------KHVILFEGFMDVIAAFQAGVQNGVA 285

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S+GT+LT  Q++ L +++ +I + +D D  G +A  +A+DL+            + +   
Sbjct: 286 SMGTSLTSEQIQRLSRMTDKISISYDADMAGQKATKRALDLITQQGR--LSAQIIHIPDN 343

Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           +DPD ++R    TAF + L+      V    +    +R+ +   E           I  +
Sbjct: 344 QDPDEYLRSNDATAFNQVLVHNVEDPVTFNLRYLQIDRNLHNQTELFSYISDALVVIATV 403

Query: 416 KDQKLRYYYSQAIRDR-------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           K+  +R  + + + +        LQ   +  + +          N    +++    +   
Sbjct: 404 KEPVIREQFLRQLANEFDLSYEALQDQIRPILLQKQAQRSSGATNTESGNRQKARHQSFP 463

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW---SFLFSD 525
            + +  K   +    E  LL  ++    +  +     A+  + +   + L+        +
Sbjct: 464 DNQIIKKSVTRIEKAEQILLAWMLRDNDVWLQVTNR-ANFSFQDVPYETLYMIAMAYREE 522

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
           + +Q           + +     +L  L+    +  +            R+   + + + 
Sbjct: 523 YQQQPATDMAAFMDYVQKPELTRILASLEEIDSELFM-----------DREQVSEYIRVI 571

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                L  +  ++ + I +     +  + A L      V  Q  
Sbjct: 572 SDEAPLEEKIRQLSRDIKEANQLHDHARIAQLSVEYMTVLKQKQ 615


>gi|15903022|ref|NP_358572.1| DNA primase [Streptococcus pneumoniae R6]
 gi|15458592|gb|AAK99782.1| DNA primase [Streptococcus pneumoniae R6]
          Length = 591

 Score =  346 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 148/629 (23%), Positives = 260/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF   + K FY+
Sbjct: 8   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFSVVEDKQFYH 62

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G +F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 63  CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 122

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 123 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 181

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T+
Sbjct: 182 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTV 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 241 IFNKSYELYHMDRAKRSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 291 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 346 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENGENLQAQIEFLEKIAPLIVQEKSIAA 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 406 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 461

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L   L   +              
Sbjct: 462 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLHD-LLGQYGN------------ 507

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 508 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 562

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 563 KVQEASHVGDTDTALEELERLISQKRRME 591


>gi|288957898|ref|YP_003448239.1| DNA primase [Azospirillum sp. B510]
 gi|288910206|dbj|BAI71695.1| DNA primase [Azospirillum sp. B510]
          Length = 950

 Score =  346 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 181/576 (31%), Positives = 287/576 (49%), Gaps = 28/576 (4%)

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD + F+       F E+V+ LA  AG+P+P    +  ++ + +  L  L+E 
Sbjct: 373 CFGCGAHGDIIGFVMRHDNLGFPEAVEHLAGEAGLPVPRPTEEDRQRYERRKTLHDLVEQ 432

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
           AT +F   L  +  +    Y   RG+D   I  F+LGYAP    +LR HL ++GFS++ +
Sbjct: 433 ATRWFEQQLHGSAGRAGLDYFLRRGLDGDTIARFRLGYAPGDSNALRTHLGKQGFSDDDM 492

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
           I AGLL   D+  + Y  FRNR++FP+   RGQV+AFGGR L      KY+N+ +T LFH
Sbjct: 493 INAGLLKRPDDGRSPYSFFRNRVMFPVTDRRGQVVAFGGRILEGD-GPKYVNTADTPLFH 551

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           KG  LY    A                   +I+ EGYMDV++L +AG +  V+ LGTALT
Sbjct: 552 KGTLLYGLSRARQAAA----------DGKPVIVAEGYMDVIALVRAGFEGAVAPLGTALT 601

Query: 304 EYQLRLLWKLSP----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           E Q++ LWKL P       LCFDGD+ G RAA++A++ +L HL PG       L  GEDP
Sbjct: 602 ETQVQELWKLIPAAEKVPFLCFDGDNAGRRAAWRAVERLLPHLAPGQSARVAFLPEGEDP 661

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS IR  G  A   ++  ++PL D LW+ E+E R  +TP+ +A ++  L+  ++ I D+ 
Sbjct: 662 DSLIRAQGPKAMGAVLETAIPLSDALWRMESEGRPTDTPEAKAAVKAALEARVSTIADRD 721

Query: 420 LRYYYSQAIRDRLQQLFQKYITEH--------SGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           ++ +Y   +R R+ + F      +         G GR+ +   RH            +  
Sbjct: 722 VQSFYRTEMRRRVDEAFAPARPAYNRGPWVPGQGRGRFGEAPRRHVPGTPGRLTSKPAGE 781

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            +G++S+  S+RE  LL TLINHP +  E  + L  + + + EL+KL   +     ++  
Sbjct: 782 GRGRVSRLASMRERILLATLINHPDLFGELAEPLGLLPFGDPELEKLRWAVIECLSDEGN 841

Query: 532 ----FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                  + + + L   G   ++  L  +        +  +A+  + R+G+  A      
Sbjct: 842 HDSALDADALCRHLSSAGHETMVGALLSESTYNHAGFSRPDASSEEARRGWWPAWRHLHH 901

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
            R+L     E +  + + T +    + A L   + +
Sbjct: 902 ERVLD-DLREAKAALKRDTNEANLARVAALQQEVIK 936



 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 5/64 (7%)

Query: 1  MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
          M +P  F+++L   + +S ++ + +   R        +Y A CPFH+EK+PSF+ ND KG
Sbjct: 1  MAFPPQFLEELRTRLTLSEVVSKRLRLIRAGR-----EYKAPCPFHNEKSPSFYVNDQKG 55

Query: 61 FYYC 64
          F++C
Sbjct: 56 FFHC 59


>gi|327382533|gb|AEA54009.1| DNA primase [Lactobacillus casei LC2W]
 gi|327385730|gb|AEA57204.1| DNA primase [Lactobacillus casei BD-II]
          Length = 595

 Score =  346 bits (886), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 162/633 (25%), Positives = 267/633 (42%), Gaps = 41/633 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   +  +L  + I++ IGQYV   +   N      +  CPFH+E TPSF  N+ K  +
Sbjct: 2   IPEATVDKVLKAVNIADYIGQYVQLRKTGQNL-----FGLCPFHEEHTPSFSVNEPKQIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CFSC   G+   F+      +F E+V+++   AG+PL V        +   +    +++
Sbjct: 57  HCFSCGRGGNVFKFVMDYDNATFPEAVKKVGDFAGMPLDVQVGHAAPVDPEISKQQHILQ 116

Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
              D FHH L N  + +    YL +RG+    IE F+LGYAP+ R  L   L  +    +
Sbjct: 117 DTADLFHHILMNTEKGQTALDYLHKRGLTDDTIEAFQLGYAPEERNLLVAFLNNRKVDYQ 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
               +GL ++       +DRF +R++FP+  S GQVI F GR LSK ++  KYLNSPET 
Sbjct: 177 DQRASGLFVEDQEG-KLFDRFNDRVMFPLTDSHGQVIGFSGRILSKDKTQAKYLNSPETK 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF+K   L+N   A     +              IL EGYMDV++  QAGV+  ++S+GT
Sbjct: 236 LFNKRDVLFNLHRAKADFGRDGGP----------ILFEGYMDVIAAYQAGVKTGIASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ ++  LS R+ +C+DGD+PG +A  +A+ ++  H     + + V+L  G DPD
Sbjct: 286 SLTTEQVDIISHLSKRLTVCYDGDEPGQKAIERAVAMLADHPR--LQTDVVVLPDGMDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FIR  G  AF+  +   L     + +        N    +          I  I +   
Sbjct: 344 EFIRARGAEAFQAQVKSVLTPTAFMLQFLARGVDMNNDQAKLTYLNAALKTIGKISNPVA 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y + + D                     + A  +    P            +   + 
Sbjct: 404 RAVYVKQLADTTGVPESALNQSL-----PAPQQAVPQQSSAPVSYQTAPVNQPVRPIDRY 458

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +  +  LL  + +   ++Q      A   +     Q L++       EQ          R
Sbjct: 459 TAAQRQLLYYVWHDDLVMQRLKN--AAFTFPAPHFQTLFTGWLDFLHEQPDGELAGFLDR 516

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +     +   +  QV         TEA I ++ Q    A  +         + + I++
Sbjct: 517 V-DPDLSGVAASVAMQVLPEA-----TEATIDELIQTITSASTV--------ERLQAIKQ 562

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            I +    G+ +K   L      +   + Q + 
Sbjct: 563 AITEAQRLGDKQKLGELTVQYVNLMKLLKQQQG 595


>gi|182684178|ref|YP_001835925.1| DNA primase [Streptococcus pneumoniae CGSP14]
 gi|182629512|gb|ACB90460.1| DNA primase [Streptococcus pneumoniae CGSP14]
          Length = 591

 Score =  346 bits (886), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 148/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 8   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G +F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 63  CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPYQALYDMHED 122

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 123 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 181

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 182 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 241 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYRAGIENAVASMGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 291 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 346 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 406 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 461

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 462 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 507

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 508 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 562

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 563 KVQEASHVGDTDTALEELERLISQKRRME 591


>gi|254994911|ref|ZP_05277101.1| DNA primase (dnaG) [Anaplasma marginale str. Mississippi]
          Length = 606

 Score =  346 bits (886), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 177/631 (28%), Positives = 290/631 (45%), Gaps = 51/631 (8%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +   + + +++ + +   +R +N     Y   CPFH EKTPSFH N S   +YCF C V 
Sbjct: 14  VREKVRLLDVVSKKIKLIKRGSNH----YVGLCPFHSEKTPSFHVNCSNDMFYCFGCGVH 69

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
           GD + F+S + G SF E+++ LA + GV LP    + E        L  L++ A  +F  
Sbjct: 70  GDVVQFVSDIDGLSFREAIEYLAQVYGVSLPAKAGRGEADF-----LYELMDYAARWFVE 124

Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190
            L  ++      YL  RGID   I  F+LGY P S   ++        S EK+ +AGLL 
Sbjct: 125 QL--SKSPTALSYLRSRGIDEKTIRKFRLGYVPVS--GIKTCFASSQISFEKVRDAGLLT 180

Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250
                    D   NRL+FPI S+ G+VIAFGGR++S   S KYLNS E  LF K ++LY 
Sbjct: 181 K-----NFQDCLYNRLVFPICSATGRVIAFGGRSVSDKHSPKYLNSAENALFKKRESLYG 235

Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310
              AL   +K  R          II VEGYMDVL L Q G+ NVV  LGTA+TE  LR +
Sbjct: 236 LHLALAAAKKLGR----------IIAVEGYMDVLILSQLGISNVVGLLGTAMTEAHLRHM 285

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
           W + P +V+  DGD  G+ A+ K   L L  +  G+ + FV   +G+DP       G   
Sbjct: 286 WDIVPEVVVWMDGDGAGMNASMKIAHLALSIIKSGHSIRFVTSPQGKDPYDVCVNLGPDT 345

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNT-----PDERAELEIHLKNCINHIKDQKLRYYYS 425
            + L+  +  L + +W  E    +  +     P++   LE  ++   + I+D  +  YY 
Sbjct: 346 AKGLVEHAKLLSEFVWDYELARANIASSGKVVPEQCMALEQRIREYTSEIRDVHIAKYYK 405

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
                +++ L ++        GR     +    ++G     +    ++    +   +R  
Sbjct: 406 SFFYQQIKALQREQ-----YNGRGAPHGSARAIEQGLRSSRLGGVSLQACAGENYQMR-- 458

Query: 486 ALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLC 542
            ++ T++  P +L +   +++ A + + + +++ L   +              ++   LC
Sbjct: 459 -VIYTIVECPRLLYDVTVFEQFASLDFAD-DMRPLQQHIVDIREAHGGELSKADLIGELC 516

Query: 543 E--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                F   L+ +  ++   G    T   +  DV +  ++         +LSRQ  EI++
Sbjct: 517 SRRADFEPALRSIQEKMSAIGCAFGTKGCSDADVEKRARREWEKL----MLSRQLSEIQE 572

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           QI ++  +G  +    L     EV  ++  +
Sbjct: 573 QIVKLRLEGRYDIALNLSEHAKEVDDRLRSL 603


>gi|298502916|ref|YP_003724856.1| DNA primase [Streptococcus pneumoniae TCH8431/19A]
 gi|298238511|gb|ADI69642.1| DNA primase [Streptococcus pneumoniae TCH8431/19A]
          Length = 591

 Score =  346 bits (886), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 149/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 8   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G +F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 63  CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 122

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 123 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 181

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 182 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  QAG++N V+S+GT
Sbjct: 241 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYQAGIENAVASMGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 291 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 346 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 406 QNSYIHILADSLASFDYAQIEQIVNESRQVQRQNRMEGISRPTPIT----MPITKQLSAI 461

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 462 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 507

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 508 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 562

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 563 KVQEASHVGDTDTALEELERLISQKRRME 591


>gi|116515597|ref|YP_816434.1| DNA primase [Streptococcus pneumoniae D39]
 gi|116076173|gb|ABJ53893.1| DNA primase [Streptococcus pneumoniae D39]
          Length = 586

 Score =  346 bits (886), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 148/629 (23%), Positives = 260/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF   + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFSVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G +F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T+
Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTV 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKRSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENGENLQAQIEFLEKIAPLIVQEKSIAA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L   L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLHD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|323466387|gb|ADX70074.1| DNA primase [Lactobacillus helveticus H10]
          Length = 614

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 159/642 (24%), Positives = 283/642 (44%), Gaps = 50/642 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P DFI ++  ++ I ++I QYV  +++       DY   CPFH EKTPSF  N+ K F
Sbjct: 7   RIPEDFIAEVRSNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNEEKQF 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESVQR+A  A + +P             + ++R+ 
Sbjct: 62  FKCFGCGKGGNVFKFLMYKDNLTFPESVQRVAEFAHIAMPA--GYNTSGGTKLSPIMRIN 119

Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A DF+H   L     +R   Y  +R +DS+ +E FK+GYAP     L  +LR KG+ +
Sbjct: 120 KDAEDFYHRVLLTTKAGERGMQYAKKRQLDSNTLEHFKIGYAPKEDNVLITYLRSKGYKD 179

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
           + + ++GL +   +    +DRFR+RL+FP+    G  I F GR +S  ++  KY+NSPET
Sbjct: 180 DDLAQSGLFVQSQDG-RLFDRFRDRLMFPLEDENGHSIGFSGRRISNDKTEAKYMNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K K L++F  A    +          S   ++L EGYMDV++  +AG+++ V+S+G
Sbjct: 239 AVFTKSKVLFHFAEAKKAAR----------SEGHLVLYEGYMDVIAAYKAGIKSGVASMG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ +L +++P I++ +DGDDPG+ A  +A  +          +  V+L    DP
Sbjct: 289 TSLTDDQVYMLRRVTPNIIVNYDGDDPGVHAEERAARMFSK--DGDFNLGIVVLPEKLDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D ++R YG   ++  +  +L   D   KR  +  + +   E+          I+H+K+  
Sbjct: 347 DEYVRKYGAEKYQGEVKGALTPTDFFLKRLAQKYNLDNDREKITYLDEAVKEISHVKNPV 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS--------- 470
            +  Y + +               +   R   +   H   +       QS+         
Sbjct: 407 EQDMYLKKLSGSAGVSLNSLKANLARERRKNNRARSHTRTRNRDYYTDQSNSLNLGEPTS 466

Query: 471 ----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
               L   +   +    ++ LL   I+     Q   +      + + + + L        
Sbjct: 467 SVETLPVQQTEVQKHPSQSRLLYLFIHSANAQQYLQE--GKFHFPDQDYETLSQLWLKFA 524

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                   +     + E+        L   + DA L     +  I ++ +          
Sbjct: 525 ATHDNPQIDSFLDFIPEQ--------LQGIIVDAELAHMPKDFTIQEINEHVFA-----L 571

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           + R +  Q  E++ Q+     + + +KT  +   + E+   +
Sbjct: 572 QKRSIYSQLNELQNQLQDAKRREDVKKTIEVTQKIIELKRIL 613


>gi|323142245|ref|ZP_08077079.1| DNA primase [Phascolarctobacterium sp. YIT 12067]
 gi|322413308|gb|EFY04193.1| DNA primase [Phascolarctobacterium sp. YIT 12067]
          Length = 593

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 157/634 (24%), Positives = 281/634 (44%), Gaps = 51/634 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            +F + +     +  +I  YV   ++  N     YW CCPFH EKTPSF  N  K  +YC
Sbjct: 6   ENFKEQVRSTADMVEIISGYVPLKKKGQN-----YWGCCPFHGEKTPSFSVNPGKSMFYC 60

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRLIE 122
           F CH  GD   F+  +  CSF+++++ LA   G+P+P       +  +EK +  +    E
Sbjct: 61  FGCHEGGDIFKFIMKIENCSFMDALKLLAGRYGIPIPEKQKTAAEIAREKQRDSIYSANE 120

Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           +A+ FF   L K A  +    YL  RGI    I  F +GYA ++  +L   L ++G   +
Sbjct: 121 LASKFFQACLTKTAYGEPALAYLAGRGIGKEIIAGFGIGYALNNFTALVSSLAKRGCQPQ 180

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +  AGL   G      YD+FRNR+I PIR +RG+++ FGGR L    + KYLN+ ET  
Sbjct: 181 VLEAAGLAARG--RDGYYDKFRNRVIIPIRDARGRIVGFGGRVL-DNSTPKYLNTAETQW 237

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+K + L+    AL  ++KS R           ++VEGYMD +SL  AG  NVV+S+GTA
Sbjct: 238 FNKRRLLFGLDIALKAIRKSGRA----------VVVEGYMDAISLHAAGFDNVVASMGTA 287

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            ++ Q +LL +L+  ++ C+D D  G +A+ +A+ +       G +V    +  G+DPD 
Sbjct: 288 FSQEQAKLLQRLADEVIFCYDSDSAGRKASVRAVSIAR---EAGLKVRIAGVPDGKDPDE 344

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           ++R +G  AF +++  +   +D          +      + E   ++   +   +++   
Sbjct: 345 YVRQHGSAAFAQVLAAAQNGIDFQIDETILQNNIANLAGKVEAVSNILPFLLECQNEIEA 404

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             + + +  RL         E+    R   +    +    P ++         +L  +  
Sbjct: 405 SEHIRRLAQRLTIDEGLIAEEYRKAARRGGRQQTGQPTVIPEEKSAGIGQQAEELLLRLL 464

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           L +            +  E   E+ +  +++  L +L+  L         +  ++++  L
Sbjct: 465 LEQPQ----------LCDECRAEVKETGFEDAVLAQLFDRLCEL---GTAYTTDKLNNVL 511

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +     L + L  Q+               D+ +  Q  L   +R R L ++ E+    
Sbjct: 512 DDASQTALARILAHQL------------PEGDMDKLMQDCLRQMRRLR-LEKEYEKHRLL 558

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             +     + E+    +     +  +I ++   +
Sbjct: 559 ADEYERSAD-ERFLSELMESQRIKNEIKKLYGNQ 591


>gi|225861038|ref|YP_002742547.1| DNA primase [Streptococcus pneumoniae Taiwan19F-14]
 gi|225727518|gb|ACO23369.1| DNA primase [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389373|gb|EGE87718.1| DNA primase [Streptococcus pneumoniae GA04375]
 gi|332201554|gb|EGJ15624.1| DNA primase [Streptococcus pneumoniae GA47368]
          Length = 586

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 146/629 (23%), Positives = 260/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G +F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPYQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--KGESVKYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR       ++ KY NS  T 
Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTYKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYRAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|149013171|ref|ZP_01833988.1| DNA primase [Streptococcus pneumoniae SP19-BS75]
 gi|225854568|ref|YP_002736080.1| DNA primase [Streptococcus pneumoniae JJA]
 gi|303256089|ref|ZP_07342109.1| DNA primase [Streptococcus pneumoniae BS455]
 gi|303260610|ref|ZP_07346575.1| DNA primase [Streptococcus pneumoniae SP-BS293]
 gi|303263022|ref|ZP_07348955.1| DNA primase [Streptococcus pneumoniae SP14-BS292]
 gi|303266911|ref|ZP_07352788.1| DNA primase [Streptococcus pneumoniae BS457]
 gi|303269115|ref|ZP_07354895.1| DNA primase [Streptococcus pneumoniae BS458]
 gi|147763022|gb|EDK69966.1| DNA primase [Streptococcus pneumoniae SP19-BS75]
 gi|225722898|gb|ACO18751.1| DNA primase [Streptococcus pneumoniae JJA]
 gi|301802036|emb|CBW34766.1| DNA primase [Streptococcus pneumoniae INV200]
 gi|302596936|gb|EFL64062.1| DNA primase [Streptococcus pneumoniae BS455]
 gi|302635849|gb|EFL66351.1| DNA primase [Streptococcus pneumoniae SP14-BS292]
 gi|302638260|gb|EFL68730.1| DNA primase [Streptococcus pneumoniae SP-BS293]
 gi|302641364|gb|EFL71731.1| DNA primase [Streptococcus pneumoniae BS458]
 gi|302643544|gb|EFL73814.1| DNA primase [Streptococcus pneumoniae BS457]
          Length = 586

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 148/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G +F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPYQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYRAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|187921408|ref|YP_001890440.1| DNA primase [Burkholderia phytofirmans PsJN]
 gi|187719846|gb|ACD21069.1| DNA primase [Burkholderia phytofirmans PsJN]
          Length = 623

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 169/654 (25%), Positives = 277/654 (42%), Gaps = 57/654 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPPSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-------- 114
           +CF C   G  + FL   +G SF E+V  LA   G+ +P                     
Sbjct: 57  HCFGCGAHGTAIGFLMEHVGSSFPEAVNELAQSVGLTVPNEASPGYGGGGSGGGYAPAAS 116

Query: 115 ----TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS-- 168
               T L  +++ A DF+   L++        YL +RG+       F LGYAPD   +  
Sbjct: 117 KAVTTALSDVMQTACDFYRKQLRS--APVAIQYLKKRGLTGEIAARFGLGYAPDGWQNLE 174

Query: 169 -LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
               + R     E  ++      D       YDRFR R++FPIR+ +GQVI FGGR L  
Sbjct: 175 PAFPNYRDDALVESGLVIVSEKSDAQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVLDG 234

Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
           GE  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L 
Sbjct: 235 GEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQHYVLVVEGYMDVVALA 283

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           Q G QN V++LGTA T   ++ L + +  ++  FDGD  G RAA +A+D  L H      
Sbjct: 284 QLGFQNAVATLGTACTPIHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRT 343

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
           + F+ L    DPDS++R YG  AF + +  ++PL   +       +  + P+ RA     
Sbjct: 344 IRFLFLPSEHDPDSYVREYGTEAFAEQVERAMPLSQFMLNEVLTGKELDQPEGRARALFD 403

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
            K  +  +    LR        DRL   F +         R          +K       
Sbjct: 404 AKPLLQALPANALRAQIMHMFADRLDVPFDEVAALCEVDSRIAAAARAAPARKDRRSVTG 463

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
                           E   L  L+ +P  +    +E            +L+  + +   
Sbjct: 464 ---------------IEEKTLRNLVMYPRTVGVLDEEAEQALLTVTRHGELFEEVTTHAR 508

Query: 528 EQKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQ 580
                   ++   L   G     F E+ +++     +    L     +A +++ R+  ++
Sbjct: 509 ALGDSAEFQLLSDLLRNGANAPTFEEIFRKILDYDENVRDLLLKDPEDATVIEERREQER 568

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +    +  +L  + +    ++ Q++ +     T    + L E++ +   ++ Q
Sbjct: 569 IVGEELKAAILKMRYDAYCDRLEQLSRQSRH--TPEEFAELSELNRKRADMKRQ 620


>gi|299141905|ref|ZP_07035040.1| DNA primase [Prevotella oris C735]
 gi|298576756|gb|EFI48627.1| DNA primase [Prevotella oris C735]
          Length = 647

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 148/670 (22%), Positives = 281/670 (41%), Gaps = 69/670 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  ++ +     I +++ ++V   +  +N     Y   CPFH+EKTPSF+ + ++G  
Sbjct: 2   IDRLTVERIKDAANIVDVVSEFVTLRKSGSN-----YKGLCPFHNEKTPSFYVSPARGTC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   G+ +SF+      ++ E+++ LA    + +         ++++  +  +  +
Sbjct: 57  HCFGCGKGGNPISFIMEHEQMTYPEALRWLANKYHIEIKERELTDDEKREQSERESMFII 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E  +++F   L N  D       Y   RG     I  FKLG+    R +L    RQKGF
Sbjct: 117 NEWVSNYFEDILHNNDDGVAIGMQYFRTRGFRDDIIRKFKLGFDLPDRLTLGRTARQKGF 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
            +E +++ G+           DR+  R+IFP     G+V+ FGGR L    KG + KY+N
Sbjct: 177 QDEYLLKTGICYRN-ERGELVDRYSGRVIFPWIGISGKVVGFGGRVLDARTKGVNQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP++ ++HK   LY  + A   + K+ R          + +VEGY DV+S+ Q G++NVV
Sbjct: 236 SPDSDIYHKDHELYGIYQAKKAIAKADR----------VYMVEGYTDVISMHQCGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ +Q+  L + +  I L +DGD  G+ AA +  D+    L  G  +  +LL  
Sbjct: 286 ANSGTALSIHQIHTLHRFTANITLLYDGDAAGIHAALRGTDM---LLQEGMNLKVLLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            +DPDSF R +    F+  I +      + +K          P +R+E    +   I+ +
Sbjct: 343 NDDPDSFARKHTAEEFKDYIEQHATDF-IRFKTALLLDKETDPLKRSEAINSIVTSISMV 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA-------RHRDQKGPSQRLMQ 468
           ++  LR  Y      R+       IT+ +   R  K          +         +  Q
Sbjct: 402 QNPILRDTYLHDCSQRIGINEATLITQMNNMIRDRKATGSMTPTAVQSTATGTQPLQANQ 461

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD--------------------- 507
           S++     +   S  E  +L  +I H   +   ++ + D                     
Sbjct: 462 SAIQSQSQANIESKAEQLMLQMIIKHGNRV--VFENIEDSDGKPLQLSIAEYFDYCLSAD 519

Query: 508 -IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            + +++    ++   +     ++ +                  + QL   + +     + 
Sbjct: 520 GLSFESPVYNQILKEVVEKGHDRSFDTEPYFVHH-----HDIHISQLAIHMTEERFKLSE 574

Query: 567 TEANIVDVRQGYQQALALYK--RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           ++    D      +A+ L    R   + +   E+++QIA+ +A    +    L++   E+
Sbjct: 575 SQQVKSDNESLRNRAIHLMLDFRMEYVEKHLRELKQQIAKASA----DNLMPLMTEYKEM 630

Query: 625 HIQIHQIESQ 634
               + +  Q
Sbjct: 631 TAIRNALAKQ 640


>gi|148985043|ref|ZP_01818286.1| DNA primase [Streptococcus pneumoniae SP3-BS71]
 gi|147922741|gb|EDK73858.1| DNA primase [Streptococcus pneumoniae SP3-BS71]
 gi|301800045|emb|CBW32639.1| DNA primase [Streptococcus pneumoniae OXC141]
          Length = 586

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 149/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G +F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  QAG++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYQAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQVQRQNRMEGISRPTPIT----MPITKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFTFATPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|33862914|ref|NP_894474.1| DNA primase [Prochlorococcus marinus str. MIT 9313]
 gi|33634830|emb|CAE20816.1| CHC2 zinc finger:Toprim domain [Prochlorococcus marinus str. MIT
           9313]
          Length = 684

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 173/668 (25%), Positives = 291/668 (43%), Gaps = 67/668 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ +     I +++G++V   ++       ++   CPFHD+  PS   + +K F
Sbjct: 5   RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           YYCFSC   G+ + FL      SF + V  LA    +P+  V+   +++ +     +  L
Sbjct: 60  YYCFSCGAGGNSIKFLMEFQRQSFGDVVLELARKYQLPVETVEGPQQERLRQQLSRRDKL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            R + +A  +F   L+         Y  ++RG+    +E F+LGYAP+    L +HL+Q 
Sbjct: 120 HRALALAAGWFRGQLRTPVGASALNYLTEKRGLSEVTLESFELGYAPEQWDGLLKHLQQV 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G S E +  AGL++        YDRFR+R++ PI   +G+VI FGGR+L   E  KYLN
Sbjct: 180 EGLSAELLEAAGLVVARKGGGGFYDRFRHRVMVPIHDRQGRVIGFGGRSLDGSEP-KYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK+L+    A N ++K  R           ++VEGY DV++L  AGV N V
Sbjct: 239 SPETDVFEKGKHLFGLDRAANAIRKDDRA----------VVVEGYFDVIALHAAGVTNSV 288

Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352
           +SLGTAL+  Q+  + + S   RIVL FD D  G+RAA +AI  V    + G   +  + 
Sbjct: 289 ASLGTALSSQQITQICRCSEGKRIVLNFDADGAGVRAANRAIGEVEQLALQGQLELRVLH 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+DPD F++ +G   +  L+ +S   +D   ++  E R  +  D+  +    L   +
Sbjct: 349 LPSGKDPDEFLKDHGAGDYRALLDQSPLWLDWQIQQVLEGRDLSQADQFQQAVSGLVALL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    +R +Y Q + +RL     +   +     R   K  R             S   
Sbjct: 409 GKLPQSAVRTHYLQQVAERLSGGQGRLALQLEEDLRQQVKGQRWHG--------RSSRHE 460

Query: 473 KGKLSKKPSLREAALLLTLI---NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +   + +    EA +L   +   NH A ++ + ++     +     + LW+ +       
Sbjct: 461 QPGEASQRERSEAEILRLYLHCSNHRAAIRRELRQRELEDFALQHHRLLWAAITDLEETN 520

Query: 530 KYFLPEEIHQR-------LCERGFGELLKQ---LDRQVRDAGLWSATTE-----ANIVDV 574
                 E   R       L +     LL     L+     A L           A +   
Sbjct: 521 LGAGRLEAISRGTDSGHDLEDIELPRLLTDQLLLENSALVARLTPLLEPGEVHLAAMAKP 580

Query: 575 RQGYQQALALYKRFRLLSR-----------QKEEIEKQIAQVTAKGEAEKTAILISILHE 623
               +   A  +R + L R           + E +E+ IA +  +   + T  +     +
Sbjct: 581 LLQLRGTAAALERQKSLKRCRHLLEAWGGQRLETLERCIAALIQEERQQPTESV-----D 635

Query: 624 VHIQIHQI 631
           +  +I  +
Sbjct: 636 MEKRIEAM 643


>gi|298230105|ref|ZP_06963786.1| DNA primase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255543|ref|ZP_06979129.1| DNA primase [Streptococcus pneumoniae str. Canada MDR_19A]
          Length = 586

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 149/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G +F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  QAG++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYQAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQVQRQNRMEGISRPTPIT----MPITKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|124023293|ref|YP_001017600.1| DNA primase [Prochlorococcus marinus str. MIT 9303]
 gi|123963579|gb|ABM78335.1| CHC2 zinc finger:Toprim domain [Prochlorococcus marinus str. MIT
           9303]
          Length = 684

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 171/674 (25%), Positives = 299/674 (44%), Gaps = 64/674 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ +     I +++G++V   ++       ++   CPFHD+  PS   + +K F
Sbjct: 5   RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           YYCFSC   G+ + FL      SF + V  LA    +P+  V+   +++ +     +  L
Sbjct: 60  YYCFSCGAGGNSIKFLMEFQRQSFGDVVLELARKYQLPVETVEGPQQERLRQQLSRRDKL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            R + +A  +F   L+         Y  ++RG+    +E F+LGYAP+    L +HL+Q 
Sbjct: 120 HRALALAAGWFRGQLRTPVGANALNYLTEKRGLSEVTLESFELGYAPEQWDGLLKHLQQV 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G S E +  AGL++        YDRFR+R++ PI   +G+VI FGGR+L   E  KYLN
Sbjct: 180 EGLSAELLEAAGLVVARKGGGGFYDRFRHRVMVPIHDRQGRVIGFGGRSLDGSEP-KYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK+L+    A N ++K  R           ++VEGY DV++L  AGV N V
Sbjct: 239 SPETDVFEKGKHLFGLDRAANAIRKDDRA----------VVVEGYFDVIALHAAGVTNSV 288

Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352
           +SLGTAL+  Q+  + + S   RIVL FD D  G+RAA +AI  V    + G   +  + 
Sbjct: 289 ASLGTALSSQQITQICRCSEGKRIVLNFDADGAGVRAANRAIGEVEQLALQGQLELRVLH 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+DPD F++ +G   +  L+ +S   +D   ++  E R  +  D+  +    L   +
Sbjct: 349 LPSGKDPDEFLKDHGAGDYRALLDQSPLWLDWQIQQVLEGRDLSQADQFQQAVSGLVALL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    +R +Y Q + +RL     +   +     R   K  R             S   
Sbjct: 409 GKLPQSAVRTHYLQQVAERLSGGQGRLALQLEEDLRQQVKGQRWHG--------RSSRHE 460

Query: 473 KGKLSKKPSLREAALLLTLI---NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV-- 527
           +   + +    EA +L   +   NH A ++ + ++     +     + LW+ +       
Sbjct: 461 QPGEASQRERSEAEILRLYLHCSNHRAAIRRELRQRELEDFALQHHRLLWAAITDLEETN 520

Query: 528 --------------EQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEAN 570
                                 E+ + L ++       L+ +L   +    +  A     
Sbjct: 521 LGAGRLEAISRGTDSGHDLEDIELPRLLTDQLLLENSALVARLTPLLEPGEVQLAAMAKP 580

Query: 571 IVDVR--QGYQQALALYKRFRLL-----SRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
           ++ +R      +     KR R L     S++ E +E+ IA +  +   + T  +   +  
Sbjct: 581 LLQLRGTTAALERQKSLKRCRHLLEAWGSQRLETLERCIAALIEEERQQPTESVDMEMR- 639

Query: 624 VHIQIHQIESQEAM 637
           +     ++ + +A+
Sbjct: 640 IEAMFEEL-NSDAL 652


>gi|226324576|ref|ZP_03800094.1| hypothetical protein COPCOM_02360 [Coprococcus comes ATCC 27758]
 gi|225207024|gb|EEG89378.1| hypothetical protein COPCOM_02360 [Coprococcus comes ATCC 27758]
          Length = 463

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 136/474 (28%), Positives = 223/474 (47%), Gaps = 24/474 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I+++     I ++I  YV   ++ +      Y+  CPFH EK+PSF  +  K 
Sbjct: 1   MYYSDEIIEEVRSKNDIVDVISGYVKLKKQGS-----SYFGLCPFHSEKSPSFSVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            YYCF C   G+  +F+      SF+E+++ LA  AGV LP      + +++   ++ L+
Sbjct: 56  MYYCFGCGAGGNVFTFIMEYENYSFVEALKFLAQRAGVELPQEEYSKEAKERADTRSALL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A  +++  LK    ++   YL  R +    I  F LGY+      L  +L+ KG+
Sbjct: 116 EMNKLAAKYYYAQLKTEGGRQAREYLQNRQLSQETITAFGLGYSSKYSDDLFRYLKMKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           SEE II+AGL ++ D     YD+F NR++FPI     +VI FGGR +      KYLNSPE
Sbjct: 176 SEEMIIKAGL-VNVDEKHGVYDKFWNRVMFPIMDVNNRVIGFGGRVM-GDGKPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K +NLY    A              +   + I+ EGYMDV+SL QAG  N V+SL
Sbjct: 234 TLIFDKSRNLYGLHRAR------------TSRKPYFIVCEGYMDVISLHQAGFTNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT     L+ +    + L +D D+ G +AA +A  +       G     + +   +D
Sbjct: 282 GTALTAGHAALIKRYVNEVYLTYDSDEAGTKAALRAAPI---LREAGVTTRVIRMEPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G  AFE+ I ++        +   +    N P+ + E        +   +++
Sbjct: 339 PDEFIKNLGAEAFEERIRKARNSFMFGLEMLEKGYDLNAPEGKTEFLREAARRLARFEEE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             R  Y +A+       +++               A     +   ++     +V
Sbjct: 399 IERDNYIEAVAKTYHVGYEELKKLVVKVAVQSGMAAPATKPRQTIRQETPKRMV 452


>gi|53716430|ref|YP_105145.1| DNA primase [Burkholderia mallei ATCC 23344]
 gi|67643220|ref|ZP_00441968.1| DNA primase [Burkholderia mallei GB8 horse 4]
 gi|121596975|ref|YP_991114.1| DNA primase [Burkholderia mallei SAVP1]
 gi|126443568|ref|YP_001063519.1| DNA primase [Burkholderia pseudomallei 668]
 gi|126456458|ref|YP_001076417.1| DNA primase [Burkholderia pseudomallei 1106a]
 gi|134278097|ref|ZP_01764811.1| DNA primase [Burkholderia pseudomallei 305]
 gi|167000272|ref|ZP_02266091.1| DNA primase [Burkholderia mallei PRL-20]
 gi|167829082|ref|ZP_02460553.1| DNA primase [Burkholderia pseudomallei 9]
 gi|167850559|ref|ZP_02476067.1| DNA primase [Burkholderia pseudomallei B7210]
 gi|167907495|ref|ZP_02494700.1| DNA primase [Burkholderia pseudomallei NCTC 13177]
 gi|226195730|ref|ZP_03791317.1| DNA primase [Burkholderia pseudomallei Pakistan 9]
 gi|237510220|ref|ZP_04522935.1| DNA primase [Burkholderia pseudomallei MSHR346]
 gi|242312000|ref|ZP_04811017.1| DNA primase [Burkholderia pseudomallei 1106b]
 gi|254177320|ref|ZP_04883976.1| DNA primase [Burkholderia mallei ATCC 10399]
 gi|254184930|ref|ZP_04891519.1| DNA primase [Burkholderia pseudomallei 1655]
 gi|254203083|ref|ZP_04909445.1| DNA primase [Burkholderia mallei FMH]
 gi|254208416|ref|ZP_04914765.1| DNA primase [Burkholderia mallei JHU]
 gi|52422400|gb|AAU45970.1| DNA primase [Burkholderia mallei ATCC 23344]
 gi|121224773|gb|ABM48304.1| DNA primase [Burkholderia mallei SAVP1]
 gi|126223059|gb|ABN86564.1| DNA primase [Burkholderia pseudomallei 668]
 gi|126230226|gb|ABN93639.1| DNA primase [Burkholderia pseudomallei 1106a]
 gi|134249881|gb|EBA49961.1| DNA primase [Burkholderia pseudomallei 305]
 gi|147746128|gb|EDK53206.1| DNA primase [Burkholderia mallei FMH]
 gi|147751103|gb|EDK58171.1| DNA primase [Burkholderia mallei JHU]
 gi|160698360|gb|EDP88330.1| DNA primase [Burkholderia mallei ATCC 10399]
 gi|184215522|gb|EDU12503.1| DNA primase [Burkholderia pseudomallei 1655]
 gi|225932215|gb|EEH28215.1| DNA primase [Burkholderia pseudomallei Pakistan 9]
 gi|235002425|gb|EEP51849.1| DNA primase [Burkholderia pseudomallei MSHR346]
 gi|238524505|gb|EEP87938.1| DNA primase [Burkholderia mallei GB8 horse 4]
 gi|242135239|gb|EES21642.1| DNA primase [Burkholderia pseudomallei 1106b]
 gi|243063760|gb|EES45946.1| DNA primase [Burkholderia mallei PRL-20]
          Length = 624

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 174/656 (26%), Positives = 275/656 (41%), Gaps = 65/656 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111
           +CF C   G  + FL    G +F E+VQ LA   G+ +P             D       
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSPMRGGGGSSDGHAPPAA 116

Query: 112 KIQ--TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167
                T L  +++ A D++   L+         YL  RG+       F LGYAPD     
Sbjct: 117 SKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQNL 174

Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
            +  +  R     +  ++      D +  A  YDRFR R++FPIR+ +GQVI FGGR L 
Sbjct: 175 EAAFDDYRHDSLVDAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLD 234

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
            GE  KYLNSPET LF+KG  LY  F A   ++             + ++VEGYMDV++L
Sbjct: 235 GGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVAL 283

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
            Q G  N V++LGTA T   ++ L + +  +V  FDGD  G RAA +A++  L H     
Sbjct: 284 AQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNR 343

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
            + F+ L    DPDS++R +G  AF + +  ++PL   L    T  +  + P+ RA+   
Sbjct: 344 TIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALF 403

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             K  +  +    LR        DRLQ  F +         R                  
Sbjct: 404 DAKPLLQALPANALRAQIMHMFADRLQIPFDEVAALAEVDARIA---------------A 448

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
                      ++ +  E   L  L+ HP I      E          + +L+  +    
Sbjct: 449 PARQAPARNERRRVTESEKRALRNLVMHPRIAAAIDDESVATLRALPRIGELFDEVIGHA 508

Query: 527 VEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGY 578
                      L + +        + E+ +++   D  VRD    +  ++A    +R+  
Sbjct: 509 RALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDAAQEGLRERE 568

Query: 579 Q------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +      QA  L  R+     +   + K+     +  E  +   L   L ++  ++
Sbjct: 569 RIAGEELQAAVLKMRYDACCDRLNSLSKR--SAPSSEELAEIKDLHQNLADMKRRL 622


>gi|56416702|ref|YP_153776.1| DNA primase [Anaplasma marginale str. St. Maries]
 gi|222475068|ref|YP_002563483.1| DNA primase (dnaG) [Anaplasma marginale str. Florida]
 gi|56387934|gb|AAV86521.1| DNA primase [Anaplasma marginale str. St. Maries]
 gi|222419204|gb|ACM49227.1| DNA primase (dnaG) [Anaplasma marginale str. Florida]
          Length = 612

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 177/631 (28%), Positives = 290/631 (45%), Gaps = 51/631 (8%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +   + + +++ + +   +R +N     Y   CPFH EKTPSFH N S   +YCF C V 
Sbjct: 20  VREKVRLLDVVSKKIKLIKRGSNH----YVGLCPFHSEKTPSFHVNCSNDMFYCFGCGVH 75

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
           GD + F+S + G SF E+++ LA + GV LP    + E        L  L++ A  +F  
Sbjct: 76  GDVVQFVSDIDGLSFREAIEYLAQVYGVSLPAKAGRGEADF-----LYELMDYAARWFVE 130

Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190
            L  ++      YL  RGID   I  F+LGY P S   ++        S EK+ +AGLL 
Sbjct: 131 QL--SKSPTALSYLRSRGIDEKTIRKFRLGYVPVS--GIKTCFASSQISFEKVRDAGLLT 186

Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250
                    D   NRL+FPI S+ G+VIAFGGR++S   S KYLNS E  LF K ++LY 
Sbjct: 187 K-----NFQDCLYNRLVFPICSATGRVIAFGGRSVSDKHSPKYLNSAENALFKKRESLYG 241

Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310
              AL   +K  R          II VEGYMDVL L Q G+ NVV  LGTA+TE  LR +
Sbjct: 242 LHLALAAAKKLGR----------IIAVEGYMDVLILSQLGISNVVGLLGTAMTEAHLRHM 291

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
           W + P +V+  DGD  G+ A+ K   L L  +  G+ + FV   +G+DP       G   
Sbjct: 292 WDIVPEVVVWMDGDGAGMNASMKIAHLALSIIKSGHSIRFVTSPQGKDPYDVCVNLGPDT 351

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNT-----PDERAELEIHLKNCINHIKDQKLRYYYS 425
            + L+  +  L + +W  E    +  +     P++   LE  ++   + I+D  +  YY 
Sbjct: 352 AKGLVEHAKLLSEFVWDYELARANIASSGKVVPEQCMALEQRIREYTSEIRDVHIAKYYK 411

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
                +++ L ++        GR     +    ++G     +    ++    +   +R  
Sbjct: 412 SFFYQQIKALQREQ-----YNGRGAPHGSARAIEQGLRSSRLGGVSLQACAGENYQMR-- 464

Query: 486 ALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLC 542
            ++ T++  P +L +   +++ A + + + +++ L   +              ++   LC
Sbjct: 465 -VIYTIVECPRLLYDVTVFEQFASLDFAD-DMRPLQQHIVDIREAHGGELSKADLIGELC 522

Query: 543 E--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                F   L+ +  ++   G    T   +  DV +  ++         +LSRQ  EI++
Sbjct: 523 SRRADFEPALRSIQEKMSAIGCAFGTKGCSDADVEKRARREWEKL----MLSRQLSEIQE 578

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           QI ++  +G  +    L     EV  ++  +
Sbjct: 579 QIVKLRLEGRYDIALNLSEHAKEVDDRLRSL 609


>gi|76819088|ref|YP_335992.1| DNA primase [Burkholderia pseudomallei 1710b]
 gi|167899152|ref|ZP_02486553.1| DNA primase [Burkholderia pseudomallei 7894]
 gi|167915834|ref|ZP_02502925.1| DNA primase [Burkholderia pseudomallei 112]
 gi|167923673|ref|ZP_02510764.1| DNA primase [Burkholderia pseudomallei BCC215]
 gi|217422647|ref|ZP_03454150.1| DNA primase [Burkholderia pseudomallei 576]
 gi|254194020|ref|ZP_04900452.1| DNA primase [Burkholderia pseudomallei S13]
 gi|254263841|ref|ZP_04954706.1| DNA primase [Burkholderia pseudomallei 1710a]
 gi|254301212|ref|ZP_04968656.1| DNA primase [Burkholderia pseudomallei 406e]
 gi|76583561|gb|ABA53035.1| DNA primase [Burkholderia pseudomallei 1710b]
 gi|157811303|gb|EDO88473.1| DNA primase [Burkholderia pseudomallei 406e]
 gi|169650771|gb|EDS83464.1| DNA primase [Burkholderia pseudomallei S13]
 gi|217394878|gb|EEC34897.1| DNA primase [Burkholderia pseudomallei 576]
 gi|254214843|gb|EET04228.1| DNA primase [Burkholderia pseudomallei 1710a]
          Length = 624

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 174/656 (26%), Positives = 275/656 (41%), Gaps = 65/656 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111
           +CF C   G  + FL    G +F E+VQ LA   G+ +P             D       
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSPMRGGGGSSDGHAPPAA 116

Query: 112 KIQ--TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167
                T L  +++ A D++   L+         YL  RG+       F LGYAPD     
Sbjct: 117 SKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQNL 174

Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
            +  +  R     +  ++      D +  A  YDRFR R++FPIR+ +GQVI FGGR L 
Sbjct: 175 EAAFDDYRHDSLVDAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLD 234

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
            GE  KYLNSPET LF+KG  LY  F A   ++             + ++VEGYMDV++L
Sbjct: 235 GGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVAL 283

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
            Q G  N V++LGTA T   ++ L + +  +V  FDGD  G RAA +A++  L H     
Sbjct: 284 AQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNR 343

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
            + F+ L    DPDS++R +G  AF + +  ++PL   L    T  +  + P+ RA+   
Sbjct: 344 TIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALF 403

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             K  +  +    LR        DRLQ  F +         R                  
Sbjct: 404 DAKPLLQALPANALRAQIMHMFADRLQIPFDEVTALAEVDARIA---------------A 448

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
                      ++ +  E   L  L+ HP I      E          + +L+  +    
Sbjct: 449 PARQAPARNERRRVTESEKRALRNLVMHPRIAAAIDDESVATLRALPRIGELFDEVIGHA 508

Query: 527 VEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGY 578
                      L + +        + E+ +++   D  VRD    +  ++A    +R+  
Sbjct: 509 RALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDAAQEGLRERE 568

Query: 579 Q------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +      QA  L  R+     +   + K+     +  E  +   L   L ++  ++
Sbjct: 569 RIAGEELQAAVLKMRYDACCDRLNSLSKR--SAPSSEELAEIKDLHQNLADMKRRL 622


>gi|170691125|ref|ZP_02882291.1| DNA primase [Burkholderia graminis C4D1M]
 gi|170144374|gb|EDT12536.1| DNA primase [Burkholderia graminis C4D1M]
          Length = 636

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 166/658 (25%), Positives = 277/658 (42%), Gaps = 58/658 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 14  IPPSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 68

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-------- 114
           +CF C   G  + FL   +G SF E+V  LA   G+ +P                     
Sbjct: 69  HCFGCGAHGTAIGFLMEHVGASFPEAVNELAQSVGLTVPNEPSPGYGGAGGSGGGYSPAA 128

Query: 115 -----TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167
                T L  +++ A D++   L+         YL +RG+       F LGYAPD     
Sbjct: 129 SKAVTTALSDVMQTACDYYRKQLRG--APVAIQYLKKRGLTGEIAARFGLGYAPDGWQNL 186

Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
            +   + R     E  ++      D       YDRFR R++FPIR+ +GQVI FGGR L 
Sbjct: 187 EAAFPNYRDDSLVESGLVIVSEKSDAQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVLD 246

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
            GE  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L
Sbjct: 247 GGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQGYVLVVEGYMDVVAL 295

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
            Q G QN V++LGTA T   ++ L + +  ++  FDGD  G RAA +A+D  L H     
Sbjct: 296 AQLGFQNAVATLGTACTPVHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNR 355

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
            + F+ L    DPDS++R +G   F + +  ++PL   +       +  + P+ RA    
Sbjct: 356 TIRFLFLPTEHDPDSYVREFGTEGFGEQVERAMPLSQFMLNEVLAGKELDQPEGRARALF 415

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             K  +  +    LR        DRL   F +         R                  
Sbjct: 416 DAKPLLQALPANALRAQIMHMFADRLDVPFDEVAALCEVDSRIA---------------A 460

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
                   K  +  +  E   L  L+ +P  +    +E            +L+  + +  
Sbjct: 461 AARLAPARKDRRSVTGIEEKTLRNLVMYPRTVAVLDEEAEQALLTVTRHGELFEEVTTHA 520

Query: 527 VEQKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQ 579
                    ++   L   G     F E+ +++     +    L     +A +++ R+  +
Sbjct: 521 RALGDSAEFQLLSDLLRNGANAPTFEEIFRKILDYDENVRDLLLKDPEDATVIEERREQE 580

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           + +    +  +L  + +    ++ Q++ +     T    + L E++ +   ++ Q  +
Sbjct: 581 RIVGEELKAAILKMRYDAYCDRLEQLSRQSRH--TPEEFAELAELNRKRADMKRQLGL 636


>gi|149019674|ref|ZP_01834993.1| DNA primase [Streptococcus pneumoniae SP23-BS72]
 gi|168487461|ref|ZP_02711969.1| DNA primase [Streptococcus pneumoniae CDC1087-00]
 gi|147931049|gb|EDK82029.1| DNA primase [Streptococcus pneumoniae SP23-BS72]
 gi|183569692|gb|EDT90220.1| DNA primase [Streptococcus pneumoniae CDC1087-00]
          Length = 586

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 148/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G +F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYRAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQVQRQNRMEGISRPTPIT----MPITKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|53722777|ref|YP_111762.1| DNA primase [Burkholderia pseudomallei K96243]
 gi|167820723|ref|ZP_02452403.1| DNA primase [Burkholderia pseudomallei 91]
 gi|52213191|emb|CAH39231.1| DNA primase [Burkholderia pseudomallei K96243]
          Length = 624

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 174/656 (26%), Positives = 275/656 (41%), Gaps = 65/656 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111
           +CF C   G  + FL    G +F E+VQ LA   G+ +P             D       
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPLPMRGGGGSSDGHAPPAA 116

Query: 112 KIQ--TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167
                T L  +++ A D++   L+         YL  RG+       F LGYAPD     
Sbjct: 117 SKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQNL 174

Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
            +  +  R     +  ++      D +  A  YDRFR R++FPIR+ +GQVI FGGR L 
Sbjct: 175 EAAFDDYRHDSLVDAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLD 234

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
            GE  KYLNSPET LF+KG  LY  F A   ++             + ++VEGYMDV++L
Sbjct: 235 GGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVAL 283

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
            Q G  N V++LGTA T   ++ L + +  +V  FDGD  G RAA +A++  L H     
Sbjct: 284 AQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNR 343

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
            + F+ L    DPDS++R +G  AF + +  ++PL   L    T  +  + P+ RA+   
Sbjct: 344 TIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALF 403

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             K  +  +    LR        DRLQ  F +         R                  
Sbjct: 404 DAKPLLQALPANALRAQIMHMFADRLQIPFDEVAALAEVDARIA---------------A 448

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
                      ++ +  E   L  L+ HP I      E          + +L+  +    
Sbjct: 449 PARQAPARNERRRVTESEKRALRNLVMHPRIAAAIDDESVATLRALPRIGELFDEVIGHA 508

Query: 527 VEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGY 578
                      L + +        + E+ +++   D  VRD    +  ++A    +R+  
Sbjct: 509 RALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDAAQEGLRERE 568

Query: 579 Q------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +      QA  L  R+     +   + K+     +  E  +   L   L ++  ++
Sbjct: 569 RIAGEELQAAVLKMRYDACCDRLNSLSKR--SAPSSEELAEIKDLHQNLADMKRRL 622


>gi|168491965|ref|ZP_02716108.1| DNA primase [Streptococcus pneumoniae CDC0288-04]
 gi|237650029|ref|ZP_04524281.1| DNA primase [Streptococcus pneumoniae CCRI 1974]
 gi|237821735|ref|ZP_04597580.1| DNA primase [Streptococcus pneumoniae CCRI 1974M2]
 gi|183573795|gb|EDT94323.1| DNA primase [Streptococcus pneumoniae CDC0288-04]
 gi|301794191|emb|CBW36609.1| DNA primase [Streptococcus pneumoniae INV104]
 gi|332202929|gb|EGJ16997.1| DNA primase [Streptococcus pneumoniae GA47901]
          Length = 586

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 148/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G +F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYRAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|313202041|ref|YP_004040699.1| DNA primase [Methylovorus sp. MP688]
 gi|312441357|gb|ADQ85463.1| DNA primase [Methylovorus sp. MP688]
          Length = 584

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 163/624 (26%), Positives = 279/624 (44%), Gaps = 48/624 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI++LL  + I ++I + V   +   N     Y ACCPFH+EK+PSF  + +K FY
Sbjct: 2   IPESFIQELLNRVDIVDVIDRSVPLKKAGAN-----YSACCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LIR 119
           +CF C   G  + F+    G SF+E+V  LA   G+ +P    + +     +     ++ 
Sbjct: 57  HCFGCGAHGSAIGFVMEYQGLSFVEAVNELAKQVGMIVPQETRERDTDAPQKKAVPGMVE 116

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            ++ A  ++   LK +  +R   YL  RG+       F++GYAP    +L+E        
Sbjct: 117 AMQQAVLYYRGELKKS--QRAIEYLKGRGLSGQIAARFQMGYAPSGWQNLQEVFSDYQDD 174

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLNS 236
             K I     +  +     YDRFR+R++FPI   +GQVI FGGR L      +  KYLNS
Sbjct: 175 VLKSIGL---VIENEQGRRYDRFRDRVMFPIHDQKGQVIGFGGRVLGTEGNDDGPKYLNS 231

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET LF KG+ LY  F A   ++ + R          +++VEGYMDV++L Q G++  V+
Sbjct: 232 PETPLFQKGQELYGLFLARRAIRDAGR----------VLVVEGYMDVVALAQYGIEYAVA 281

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +  L + +  IV CFDGD  G +AA++A    L  L  G R++F+ L   
Sbjct: 282 ALGTATTPVHITKLMRQTDEIVFCFDGDAAGRKAAWRAAMNALPALTDGLRLSFLFLPAE 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPDS++R YGK AFE  +  +LPL   L +  +E+    + +++       +  +  I+
Sbjct: 342 HDPDSYVREYGKEAFEAAMQTALPLSQYLIQHLSEDNGLQSQEDKVRFLNEAEPILAQIQ 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
             +L     + + +      ++  +          + ++ R  +                
Sbjct: 402 APRLALLLRKRVAELAGLSDEEMRSMIRLPEVQRPRRSQPRQTRSTLS------------ 449

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  +   +L ++  PA++     +LA + +++ E   L        V      P  
Sbjct: 450 ------LQRRFVLMVLMQPALVSP--DDLAWVLHESEE-DALVKHALEAAVAYPSAKPAG 500

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +  +L  R    L+++L+R++                 R+  +   A  +   LL+R +E
Sbjct: 501 LLLQLQNRVDARLMRELEREI-HLLDEQVDYSLEFEGARKQLRDMYAERQGKTLLARMQE 559

Query: 597 EIEKQIAQVTAKGEAEKTAILISI 620
           +    + +              + 
Sbjct: 560 KKISDMTEQEKALLKAMVGATKNR 583


>gi|313149171|ref|ZP_07811364.1| DNA primase [Bacteroides fragilis 3_1_12]
 gi|313137938|gb|EFR55298.1| DNA primase [Bacteroides fragilis 3_1_12]
          Length = 675

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 159/680 (23%), Positives = 288/680 (42%), Gaps = 70/680 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I  ++  +V   +R  N     Y   CPFH+EKTPSF  + SKG  
Sbjct: 10  IDQATIDRILDAAQIVEVVSDFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPSKGLC 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CFSC   G+ + F+      S+ E+++ LA    + +   +   E+KE    +  +  +
Sbjct: 65  KCFSCGKGGNAVHFIMEHEQMSYPEALRYLAKKYNIEIKERELTNEEKEVQSNRESMFIV 124

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y  +RG     I+ F+LG++ + R +L +   +KGF
Sbjct: 125 NNFARDYFQNILKNHVDGRSIGLAYFRQRGFRDDIIDKFQLGFSTEGRDALAQEAMRKGF 184

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
            +E +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR LS       KY+NS
Sbjct: 185 KKEFLVKTGLCYET-DDHKLRDRFWGRVIFPVHTLSGKVVAFGGRVLSTENKKLAKYVNS 243

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+GV+NVV+
Sbjct: 244 PESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVVA 293

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S GT+LT  Q+RL+ + +  I + +DGD  G++A+ + ID+    L  G  +   LL  G
Sbjct: 294 SSGTSLTPGQIRLIHRFTNNITVLYDGDMAGIKASIRGIDM---LLEEGMNIKVCLLPDG 350

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPDSF R +  T F+  I E          +     +   P +RAEL   +   I  I 
Sbjct: 351 DDPDSFARKHNATEFQNFIQEHETDFIRFKAQLLMEDAGKDPMKRAELINDIVRSIAVIP 410

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS------ 470
           +  +R  Y +     L+   +  ++E +       +          +             
Sbjct: 411 EAIVRDVYIKECGQLLRIEDKLLVSEVAKRRELQAEKGNKPAVTNHAPVPEAGEIPPPFP 470

Query: 471 -------------LVKGKLSKKPSLREAALLLTLINHPA-----------------ILQE 500
                          +GK  ++    E  ++  +I +                   +++ 
Sbjct: 471 PEEAEIDTYQSFIPQEGKEGQEFYKYERLIIQMIIRYGERVMCNMTDEEGNEVPVTVVEY 530

Query: 501 QYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
              +L   ++ + N   +++ S       EQ++           +     +  +L     
Sbjct: 531 VINDLKEDELAFHNPLHRRILSEAAEHIREQEFASERFFVAH-PDPAISTIATELASDRY 589

Query: 559 DAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
               + + T+  + D  + Y+    L +  +  +++ + + I   +       +  +   
Sbjct: 590 QLSKYHSKTQKLVTDEERLYEMVPMLMINFKNAIVAEELKHIMYALQDPAIANDNAQCDA 649

Query: 617 LISILHEVHIQIHQIESQEA 636
           ++    E+     +I++  A
Sbjct: 650 VMQRYKEMK----EIQNLMA 665


>gi|260101317|ref|ZP_05751554.1| DNA primase [Lactobacillus helveticus DSM 20075]
 gi|260084902|gb|EEW69022.1| DNA primase [Lactobacillus helveticus DSM 20075]
          Length = 611

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 160/642 (24%), Positives = 283/642 (44%), Gaps = 50/642 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P DFI ++  ++ I ++I QYV  +++       DY   CPFH EKTPSF  N+ K F
Sbjct: 4   RIPEDFIAEVRSNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNEEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESVQR+A  A + +P             + ++R+ 
Sbjct: 59  FKCFGCGKGGNVFKFLMYKDNLTFPESVQRVAEFAHIAMPA--GYNTSGGTKLSPIMRIN 116

Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A DF+H   L     +R   Y  +R +DS+ +E FK+GYAP     L  +LR KG+ +
Sbjct: 117 KDAEDFYHRVLLTTKAGERGMQYAKKRQLDSNTLEHFKIGYAPKEDNVLITYLRSKGYKD 176

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
           + + ++GL +   +    +DRFR+RLIFP+    G  I F GR +S  ++  KY+NSPET
Sbjct: 177 DDLAQSGLFVQSQDG-RLFDRFRDRLIFPLEDENGHSIGFSGRRISNDKTEAKYMNSPET 235

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K K L++F  A    +          S   ++L EGYMDV++  +AG+++ V+S+G
Sbjct: 236 AVFTKSKVLFHFAEAKKAAR----------SEGHLVLYEGYMDVIAAYKAGIKSGVASMG 285

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ +L +++P I++ +DGDDPG+ A  +A  +          +  V+L    DP
Sbjct: 286 TSLTDDQVYMLRRVTPNIIVNYDGDDPGVHAEERAARMFSK--DGDFNLGIVVLPEKLDP 343

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D ++R YG   ++  +  +L   D   KR  +  + +   E+          I+H+K+  
Sbjct: 344 DEYVRKYGAEKYQGEVKGALTPTDFFLKRLAQKYNLDNDREKITYLDEAVKEISHVKNPV 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS--------- 470
            +  Y + +               +   R   +   H   +       QS+         
Sbjct: 404 EQDMYLEKLSRSAGVSLNSLKANLARERRKNNRARSHTRTRNRDYYTDQSNSLNLGEPTS 463

Query: 471 ----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
               L   +   +    ++ LL   I+     Q   +      + + + + L        
Sbjct: 464 SVETLPVQQTEVQKHPSQSRLLYLFIHSANAQQYLQE--GKFHFPDQDYETLSQLWLKFA 521

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                   +     + E+        L   + DA L     +  I ++ +          
Sbjct: 522 ATHDNPQIDSFLDFIPEQ--------LQGIIVDAELAHMPKDFTIQEINEHVFA-----L 568

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           + R +  Q  E++ Q+     + + +KT  +   + E+   +
Sbjct: 569 QKRSIYSQLNELQNQLQDAKRREDVKKTIEVTQKIIELKRIL 610


>gi|291515121|emb|CBK64331.1| DNA primase, catalytic core [Alistipes shahii WAL 8301]
          Length = 657

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 157/675 (23%), Positives = 287/675 (42%), Gaps = 67/675 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ +  +     I ++IG+YV   R+  N     Y ACCPFH+EKTPSF  + SKG Y
Sbjct: 2   IDRETVDRIYAAANIVDIIGEYVTLKRKGVN-----YQACCPFHNEKTPSFVVSPSKGVY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CF C   G+ ++FL      ++ E+++ +A   G+ +       +  ++   +  +  L
Sbjct: 57  KCFGCGKGGNAVTFLMEHENITYPEALKMVAKRYGIEVKEKEMTEEEVRRNDDRESMFAL 116

Query: 121 IEVATDFFHHSLKNARDKRL---HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              A ++F + L    + +     Y+  +RG+    I  F LG+ P     + +     G
Sbjct: 117 NGWAAEYFANYLHRETEGQSVGLAYFRQKRGMTDATIRKFGLGFCPAKGDRMSKDALAAG 176

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNS 236
           + +E ++  GL +  ++  + YDRFR+R+IFP+ +  G+++AFGGRTL   + V KY NS
Sbjct: 177 YKQEFLVSTGLSLQRESDGSLYDRFRDRVIFPVHNISGRIVAFGGRTLRTDKQVAKYQNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ ++ K + LY  + A   +              F I+VEGY DV+S+ QAGV+NVVS
Sbjct: 237 PESEIYSKKRELYGLYFAKKAI----------QQQDFAIMVEGYTDVISMHQAGVENVVS 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S GT+LT  Q+RLL + +  I + +DGD  G+ A+ + ID+    L  G  V  VLL   
Sbjct: 287 SSGTSLTTEQIRLLNRFTKNITVIYDGDSAGIHASLRGIDM---ILKEGMNVRVVLLPEP 343

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDSF R +  +  ++ I  +         +     +   P  +A L   +   ++ I 
Sbjct: 344 EDPDSFARSHTASELQEYIRANEQDFLEFKAKLLLQDAEGDPIRKAALIADMVQSVSVIP 403

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK--------NARHRDQKGPSQRLMQ 468
           D   R  Y +     +    Q  I+E +                  +   ++  +Q+   
Sbjct: 404 DPIQRSVYIKECARIMDIDEQILISEVARKRMTTSGDRETDEFLRRQTTLRQREAQQPGV 463

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPA---------------ILQEQYQELAD--IRYD 511
             + + +        E  ++  L+ +                 + +  + EL+D  I + 
Sbjct: 464 EFVKQVEAGSSFETLEREIVKYLLKYGHCSFDFKEGRTMVACNVAEVIFSELSDDNIAFR 523

Query: 512 NNELQKLWSFLFS---DFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSAT 566
           N    K+ +                       +        +  L  D     + LW   
Sbjct: 524 NPVYNKIMAAYREQWAQLGTGVEVPAHVFLNHIDPEVCNMSVDILTSDDNYVASELWRRK 583

Query: 567 T---EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
               + +   +  G  +A+ LY + +++    +E++ ++         E+   ++  L  
Sbjct: 584 EIHIDTDAEMLAVGVPKAVTLY-KSKVIEALIKELQGRLGDENIS--DEEMRDVVQRLTA 640

Query: 624 -------VHIQIHQI 631
                  +  +I ++
Sbjct: 641 YNQVKVTIANKIQRL 655


>gi|315658162|ref|ZP_07911034.1| DNA primase [Staphylococcus lugdunensis M23590]
 gi|315496491|gb|EFU84814.1| DNA primase [Staphylococcus lugdunensis M23590]
          Length = 604

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 144/634 (22%), Positives = 263/634 (41%), Gaps = 37/634 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIEQSVINEIKEKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP-KIEKKEKIQTDLIR 119
             +CF C   G+   F   +   SF+E+V+ L A   + + +  P +  +       +I 
Sbjct: 56  ICHCFGCKKGGNVFQFTQDIKDISFVEAVKELGARVNINVDIGTPSETPQIASDDLKMIE 115

Query: 120 LIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + E+   ++ ++ LK    +    YL +RG     I+   +GYAPD+ +   + L +  +
Sbjct: 116 MHELMQTYYQYALLKTVEGEEALNYLKQRGFTDELIQQRGIGYAPDNAHFCLDFLTKNDY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             E   EAGLL   + + + YDRFR+R++FP+ +++G+++ + GRT  + +  KYLNSPE
Sbjct: 176 DIELAYEAGLLSRNEENFSYYDRFRDRIMFPLNNAQGRIVGYSGRT-YRNQEPKYLNSPE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K + LYN   A   ++K          +  +IL+EG+MDV+    AG+++VV+S+
Sbjct: 235 TPIFQKRRLLYNLDYARKRIRK----------NDEVILLEGFMDVIKSDAAGLKHVVASM 284

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTAL++  +  L KL+  + L FDGD  G  AA K   +    L  G  V  + L    D
Sbjct: 285 GTALSQEHITFLKKLTSNVTLMFDGDFAGREAALKTGQV---LLQQGLNVYIIQLPNDMD 341

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I  YGK  F   +        +   +  ++   +               +  ++  
Sbjct: 342 PDEYIVKYGKEEFLNFVATEKKSFIVFKYKTKQDEIQHNDLAYERYLKEAIQDVAFVQSN 401

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYG----RYWKKNARHRDQKGPSQRLMQSSLVKG 474
            L+    Q +         +   E +        Y   N         +Q +  + +   
Sbjct: 402 ILKNKIVQDVAGVFNIEANRLNNEIAQQSHSITEYDYDNYYSGAYFHDNQPMHAAQIDNF 461

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
               K    E  LL   +N           +    + N   ++++  L   + E   +  
Sbjct: 462 NHLNKREKAERGLLKHFMNDKDTFLNYAANINSQLFSNPSFKQIFEILKDFYAENDNYHI 521

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            +  Q        E++  LD             + N+       +  +A           
Sbjct: 522 SDFIQYTDSSDLREMMISLDNY-----------DLNLEPFDHEIEDYIATLMENND-EDS 569

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            E +  ++ +    G+ +     + ++ + + Q 
Sbjct: 570 IEILNHKLNEAQRTGDIDMVKYYLQMIVQKNQQR 603


>gi|265767061|ref|ZP_06094890.1| DNA primase [Bacteroides sp. 2_1_16]
 gi|263253438|gb|EEZ24914.1| DNA primase [Bacteroides sp. 2_1_16]
          Length = 675

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 156/680 (22%), Positives = 289/680 (42%), Gaps = 70/680 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I  ++  +V   +R  N     Y   CPFH+EKTPSF  + SKG  
Sbjct: 10  IDQATIDRILDAAQIVEVVSDFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPSKGLC 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CFSC   G+ + F+      S+ E+++ LA    + +   +   E+KE    +  +  +
Sbjct: 65  KCFSCGKGGNAVHFIMEHEQMSYPEALRYLAKKYNIEIKERELTNEEKEVQSNRESMFIV 124

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y  +RG     I+ F+LG++ + R +L +   +KGF
Sbjct: 125 NNFARDYFQNILKNHVDGRSIGLAYFRQRGFRDDIIDKFQLGFSTEGRDALAQEALRKGF 184

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
            +E +++ GL  +  +     DRF  R++FP+ +  G+V+AFGGR LS       KY+NS
Sbjct: 185 KQEFLVKTGLCYET-DDHKLRDRFWGRVMFPVHTLSGKVVAFGGRVLSTENKKLAKYVNS 243

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+GV+NVV+
Sbjct: 244 PESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVVA 293

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S GT+LT  Q+RL+ + +  I + +DGD  G++A+ + ID+    L  G  +   LL  G
Sbjct: 294 SSGTSLTPGQIRLIHRFTNNITVLYDGDMAGIKASIRGIDM---LLEEGMNIKVCLLPDG 350

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPDSF R +  T F+  I E          +     +   P +RAEL   +   I  I 
Sbjct: 351 DDPDSFARKHNATEFQNFIQEHETDFIRFKAQLLMEDAGKDPMKRAELINDIVRSIAVIP 410

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS------ 470
           +  +R  Y +     L+   +  ++E +       +          +             
Sbjct: 411 EAIVRDVYIKECGQLLRIEDKLLVSEVAKRRELQAEKGNKPIASNNAPTPQPGEMPPPFP 470

Query: 471 -------------LVKGKLSKKPSLREAALLLTLINHPA-----------------ILQE 500
                          +GK  ++    E  ++  ++ +                   +++ 
Sbjct: 471 PEEMEADTYQSFIPQEGKEGQEFYKYERLIIQMIVRYGEKVMCNLTDEEGNEVPVTVVEY 530

Query: 501 QYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
              +L   ++ + N   +++ S       +Q++           +     +  +L     
Sbjct: 531 VINDLKEDELAFHNPLHRRILSEASEHIHDQEFASERFFVAH-PDPKISTIATELASDRY 589

Query: 559 DAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
               + + T+  + D  + Y+    L +  +  +++ + + I   +   +   +  +   
Sbjct: 590 QLSKYHSKTQKLVTDEERLYEMVPMLMINFKNAIVAEELKHIMYALQDPSIANDNAQCDA 649

Query: 617 LISILHEVHIQIHQIESQEA 636
           ++    E+     +I++  A
Sbjct: 650 VMQRYKEMK----EIQNLMA 665


>gi|323344825|ref|ZP_08085049.1| DNA primase [Prevotella oralis ATCC 33269]
 gi|323094095|gb|EFZ36672.1| DNA primase [Prevotella oralis ATCC 33269]
          Length = 646

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 149/660 (22%), Positives = 279/660 (42%), Gaps = 56/660 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I+ +     I +++ ++V   +R  N     Y   CPFH+EKTPSF  + S+G  
Sbjct: 2   IDKPTIEKIKDAANIVDVVSEFVSLRKRGAN-----YMGLCPFHNEKTPSFVVSPSRGTC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   G+ +SF+      ++ E+++ LA    + +         ++++  +  +  +
Sbjct: 57  HCFGCGKGGNAVSFIMEHEQMTYPEALKWLANKYHIEIKERELTDDEKREQSEREAMFIV 116

Query: 121 IEVATDFFHHSLKNARDK--RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E    +F + L N  D       Y   RG     IE F+LGY    R++L     +KG+
Sbjct: 117 NEWTAKYFQNILHNTPDGLAIGMQYFRSRGFRDDIIEKFQLGYDLQDRHALAATAIKKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
             E +++ G+  +  +     DRF  R++FP     G+V+ FGGR L    KG ++KY+N
Sbjct: 177 KPEFLLKTGICYEN-DRHELIDRFSGRVVFPWIGVSGKVVGFGGRVLDSRTKGVNIKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R          + +VEGY DV+S+ Q G++NVV
Sbjct: 236 SPESDIYHKDHELYGIYQAKKAIAKEDR----------VYMVEGYTDVISMHQCGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ +Q+  L + +  I L +DGD+ G+ AA +  D+    L  G  +  +LL  
Sbjct: 286 ANSGTALSFHQIHTLHRFTSNITLLYDGDEAGIHAALRGTDM---LLAEGMNLKVLLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G DPDSF R +    F + I +      + +K +   ++   P +R+E    +   I+ I
Sbjct: 343 GNDPDSFSRQHSAAVFRQYINDHQTDF-IQFKTDLLLKNETDPIKRSEAINSIVKSISVI 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR----YWKKNARHRDQKGPSQRLMQSSL 471
           ++Q LR  Y      R+       I   + + R       K    + Q+  +Q   +  +
Sbjct: 402 QNQILRDTYLHDCAQRMGINEGTLINTMNRFIRDSRDAQAKETDRKQQEQETQVAPRQPI 461

Query: 472 VKGKLSKKPSLREAALLLTLINHPA--ILQEQYQE------------------LADIRYD 511
                 ++    E  L+  ++ +    I+++   E                    ++++ 
Sbjct: 462 QPATPMQQAKKVEQMLIQLVMKYGERIIVKDATDEEGNVYTLSVAQFIDYNLNTDNLQFG 521

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
           N    K+ +        + +                  +       +     S   E + 
Sbjct: 522 NELYNKILAEAVECCRTEGFRAETYFIHHEDIEVSRLAID--MTADKFKLSESLKKEVDD 579

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             +       L L  R   + ++ +E+++ I    A  E EK   L+    ++    + +
Sbjct: 580 ERLLNRTIHLL-LDFRMDYVEKRLKELQQGI--SLAVNEPEKMLKLMEEYKDMQNIRNTL 636


>gi|268319376|ref|YP_003293032.1| DNA primase [Lactobacillus johnsonii FI9785]
 gi|262397751|emb|CAX66765.1| DNA primase [Lactobacillus johnsonii FI9785]
          Length = 603

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 150/634 (23%), Positives = 277/634 (43%), Gaps = 44/634 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI ++   + I ++I QYV  +++       DY   CPFH EKTPSF  N+ K F
Sbjct: 4   RIPEKFIDEVRNSVDIVDVISQYVSLEKKGK-----DYLGLCPFHQEKTPSFTVNEGKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESV+++A +A + +P    +  K       +    
Sbjct: 59  FKCFGCGKGGNVFKFLMYQDHLTFPESVRKVAELAHLHMPDGYGETVKPISPLKKMY--- 115

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             AT+F+ H L   +  +R   Y  +R + S  +E FK+GYAPD+   L  +LRQ+G+++
Sbjct: 116 RQATEFYQHILLTTKVGERALEYAQKRELTSDLLEHFKVGYAPDNDTILLTYLRQEGYTD 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
           +++ E+GL ++  +    +DRFR+RL+FP+    G  + F GR +S  +++ KY+NSPET
Sbjct: 176 DELRESGLFVESQDG-QLFDRFRDRLMFPLGDESGYTVGFSGRRISNDKTIAKYMNSPET 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K K L++F  A    +          S   +IL EGYMDV++  ++G+Q+ V+S+G
Sbjct: 235 KIFNKSKLLFHFAEAKKAAR----------SEKHLILYEGYMDVIAAYKSGIQSGVASMG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT  Q+ +L +++P I++ +DGD PG+ AA +A  L     + G  +  ++L    DP
Sbjct: 285 TSLTTEQVYMLRRITPNILINYDGDPPGIHAAERATKLFG--QVQGFNLGIIVLPENLDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG   ++  +  +L  +D L +R     + +   E+          I  + D  
Sbjct: 343 DEYVKKYGVEKYQAEVAGALSSIDFLLERLANQYNLHNDREKLGYITASVQMIAGLNDPV 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
               Y   +  +     +          R  ++   H+      + L      + K  + 
Sbjct: 403 AADLYLDKLARQTGVTRESLKVTFVRERRKLQRAKNHQQAYQAPKSLPIDQPSEPKEEQA 462

Query: 480 PSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
               E        LL   I+          +     + +    KL  F        +   
Sbjct: 463 GIDLETRNPALDRLLYLFIHSDEARDYLLSQ--QFLFPDERYAKLAEFWLKYHQTHEGAE 520

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                  + E        +L   + +  + S   + +  ++    +           + +
Sbjct: 521 VTGFIDFIPE--------ELQGIIINMEMISMPPDYSKRELDDQLRA-----LEKNKIDQ 567

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           Q  ++  Q+     K +      +   +  +  +
Sbjct: 568 QLNDLLNQLKDAQRKQDNSLELEIAQKVIALRRK 601


>gi|295135651|ref|YP_003586327.1| DNA primase [Zunongwangia profunda SM-A87]
 gi|294983666|gb|ADF54131.1| DNA primase [Zunongwangia profunda SM-A87]
          Length = 674

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 146/672 (21%), Positives = 265/672 (39%), Gaps = 64/672 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +     +  +I  +V   +  TN     +    PF DE+TPSF  +  K  +
Sbjct: 16  ISKSTIDSVFETARVEEVIQDFVQLKKSGTN-----FKGLSPFTDERTPSFMVSPVKQIW 70

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA   G+ +       E+KE+   +  +  +
Sbjct: 71  KDFSSGKGGNVVAFLMEHEHYTYPEAIKYLAKKYGIEIEETQQTDEQKEQANERESMYLV 130

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +F   L      +     Y  ERG  +  I+ F+LGY  D   +  +    +G+
Sbjct: 131 SEFANKYFQKILHKTDAGQAIGLSYFKERGFTNETIKKFELGYCLDDWDAFTKEALAEGY 190

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
             + + + GL I        +DRF+ R++FPI S  G+V+ FGGR L+  +   KYLNSP
Sbjct: 191 KLDYLEKTGLSIVKGERQ--FDRFKGRVMFPIHSMSGRVLGFGGRILTSDKKAAKYLNSP 248

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY    A   + K               LVEGY DV+   Q+GV+NVVSS
Sbjct: 249 ESEIYHKSKVLYGISYAKQAIAK----------EDNCYLVEGYTDVIQFHQSGVENVVSS 298

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ +L+  I + FDGD  G+RA+ + IDL    L  G  V       GE
Sbjct: 299 SGTALTTEQIRLISRLTKNITVLFDGDAAGIRASLRGIDL---ILEQGMNVKVCTFPEGE 355

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R   +   ++ + E+               + N P ++A L   + + I  I D
Sbjct: 356 DPDSFARQKSEDQLKEFLAENATDFISFKASLLMKDAKNDPVKKAALIRDMVSSIAKIPD 415

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ------RLMQSSL 471
              +  Y Q     +        +  +   +  +++ +   +K                 
Sbjct: 416 TIQQEVYLQECSRIMDISEDVLFSTLAQLTKKGEQDQKRAAKKDQKSFKVVRDNQPNQEQ 475

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQEL-------------------------- 505
              +   +  + E  ++  L+ +    +E  +                            
Sbjct: 476 QTIRRVDELHVLERGIVSALLLYGNEKREFEEMFLEADESGEPVLKSAHVERKVSRKIYL 535

Query: 506 ----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL---DRQVR 558
                ++   N + + ++  L   +  ++  + E+    +       +   L   ++   
Sbjct: 536 DLQEDEVALANPDFRAIYEHLIEYYNREEKLIIEKFVSEIPPEKSAIVTDILMAEEQYQL 595

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
              +       +  +          L  R  LL  + +E++  I ++ A+ +  +    I
Sbjct: 596 SDWMRQDIPVKSKNEQIDRLVSETILNFRRHLLMSKIKELQSSITELNAEVDNSEKLEEI 655

Query: 619 SILHEVHIQIHQ 630
               ++   I +
Sbjct: 656 MDYIQLRKTIEE 667


>gi|161507647|ref|YP_001577601.1| DNA primase [Lactobacillus helveticus DPC 4571]
 gi|160348636|gb|ABX27310.1| DNA primase [Lactobacillus helveticus DPC 4571]
          Length = 611

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 159/642 (24%), Positives = 283/642 (44%), Gaps = 50/642 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P DFI ++  ++ I ++I QYV  +++       DY   CPFH EKTPSF  N+ K F
Sbjct: 4   RIPEDFIAEVRSNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNEEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESVQR+A  A + +P             + ++R+ 
Sbjct: 59  FKCFGCGKGGNVFKFLMYKDNLTFPESVQRVAEFAHIAMPA--GYNTSGGTKLSPIMRIN 116

Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A DF+H   L     +R   Y  +R +DS+ +E FK+GYAP     L  +LR KG+ +
Sbjct: 117 KDAEDFYHRVLLTTKAGERGMQYTKKRQLDSNTLEHFKIGYAPKEDNVLITYLRSKGYKD 176

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
           + + ++GL +   +    +DRFR+RLIFP+    G  I F GR +S  ++  KY+NSPET
Sbjct: 177 DDLAQSGLFVQSQDG-RLFDRFRDRLIFPLEDENGHSIGFSGRRISNDKTEAKYMNSPET 235

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K K L++F  A    +          S   ++L EGYMDV++  +AG+++ V+S+G
Sbjct: 236 AVFTKSKVLFHFAEAKKAAR----------SEGHLVLYEGYMDVIAAYKAGIKSGVASMG 285

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ +L +++P I++ +DGDDPG+ A  +A  +          +  V+L    DP
Sbjct: 286 TSLTDDQVYMLRRVTPNIIVNYDGDDPGVHAEERAARMFSK--DGDFNLGIVVLPEKLDP 343

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D ++R YG   ++  +  +L   D   KR  +  + +   E+          I+H+K+  
Sbjct: 344 DEYVRKYGAEKYQGEVKGALTPTDFFLKRLAQKYNLDNDREKITYLDEAVKEISHVKNPV 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS--------- 470
            +  Y + +               +   R   +   H   +       QS+         
Sbjct: 404 EQDMYLEKLSRSAGVSLNSLKANLARERRKNNRARSHTRTRNRDYYTDQSNSLNLGEPTS 463

Query: 471 ----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
               +   +   +    ++ LL   I+     Q   +      + + + + L        
Sbjct: 464 SVETMPVQQTEVQKHPSQSRLLYLFIHSANAQQYLQE--GKFHFPDQDYETLSQLWLKFA 521

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                   +     + E+        L   + DA L     +  I ++ +          
Sbjct: 522 ATHDNPQIDSFLDFIPEQ--------LQGIIVDAELAHMPKDFTIQEINEHVFA-----L 568

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           + R +  Q  E++ Q+     + + +KT  +   + E+   +
Sbjct: 569 QKRSIYSQLNELQNQLQDAKRREDVKKTIEVTQKIIELKRIL 610


>gi|330839345|ref|YP_004413925.1| DNA primase [Selenomonas sputigena ATCC 35185]
 gi|329747109|gb|AEC00466.1| DNA primase [Selenomonas sputigena ATCC 35185]
          Length = 589

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 165/630 (26%), Positives = 275/630 (43%), Gaps = 45/630 (7%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
             F++ +     I  ++  YV   ++        YW CCPFH E TPSF     +GF+YC
Sbjct: 2   DAFVERVRADSDIVAVVSSYVALKKKGN-----RYWGCCPFHHENTPSFSVVPEQGFFYC 56

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRLIE 122
           F CHV G+   FLS +    + E+++  A    +PLP  +    +  ++K   +L R+ E
Sbjct: 57  FGCHVGGNVFKFLSLIENIPYFEAIKLQAEKLNIPLPERERSAAEIARDKKAEELRRVHE 116

Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           +A  FFH+ L K    +    YL  RGI    IE F +GYAP +   L     ++G    
Sbjct: 117 MAQTFFHNCLTKTHYGEAAKAYLAGRGIGESVIEAFGIGYAPPAWDKLAVAFEKRGVPAA 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            + E+GL       A  YDRFRNR+I PIR +RG+V+AFGGR L      KYLNSPET++
Sbjct: 177 LLEESGLAAKRQKGAGHYDRFRNRVIIPIRDARGRVVAFGGRIL-GDGEPKYLNSPETLI 235

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+K + L+    A   + +          + F ++VEGYMD +S+  AG++NVV+SLGTA
Sbjct: 236 FNKRRLLFGLDRAHRAIAR----------AGFAVVVEGYMDAISVAAAGIENVVASLGTA 285

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
               Q +LL + +P +  C+D D  G  A  +A+ +       G  V  + +  G+DPD 
Sbjct: 286 FAAEQAKLLLRYAPEVRFCYDSDAAGQEATLRALSVAR---AAGATVKVLRVPDGKDPDE 342

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           +IR +G+ AF KL+  +LP ++    R  E     +   R +    L   +  +K     
Sbjct: 343 YIRKHGEAAFRKLVEAALPFIEYRMVRVLETADKESLQGRLDTLAALLPVLAEVKSPAEL 402

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y       L         E           A  R+    + +     L +        
Sbjct: 403 DGYIVRTARELTLDEGLIRAELGRAAGSSAPPAAVRETTRRAFKKADDILQRAG------ 456

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                +L T  + PA+ +     +    +   E  K  ++L+   +  +          L
Sbjct: 457 ---RIVLRTAWHDPAVTEHIASLVPFEAFSTEEQAKALAWLYGLHLAGERPTDARAQAEL 513

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            E    E+ + L              +   +D  + Y  ++   +R   L++  EE  ++
Sbjct: 514 SEAVATEISRSLA------------EDTGTMDALEAYDDSMRRLRRAY-LAQLFEEHTRR 560

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             +   + +A +    ++ +  +  ++  +
Sbjct: 561 ADRWEKENDA-RFLQELAQIQRIKNEMEGL 589


>gi|83746508|ref|ZP_00943559.1| DNA primase [Ralstonia solanacearum UW551]
 gi|83726839|gb|EAP73966.1| DNA primase [Ralstonia solanacearum UW551]
          Length = 603

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 178/643 (27%), Positives = 284/643 (44%), Gaps = 59/643 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-----IEKKEKIQTDL 117
           +CF C   G  + FL    G S++E+++ LA  AG+ +P            +++     L
Sbjct: 57  HCFGCGAHGSAIGFLMEFSGLSYVEAIRDLAQSAGMVVPEERGGLPPGARAERQAKTVAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             ++  A D +   L++        YL  RG+       F LGYAPD   SL        
Sbjct: 117 GDVMARAGDHYRKQLRS--AANAIQYLKGRGLTGEIAGHFGLGYAPDDWQSLEAVFGAYR 174

Query: 178 FSEEKI--IEAGLLIDGDN-----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
                +  IEAGL+I+ +          YDRFR+R++FPIR+++G VI FGGR L +GE 
Sbjct: 175 DDAIAVPLIEAGLVIESEKTDADGRHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF KG  LY  F A N ++             ++++VEGYMDV++L Q G
Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFGYVLVVEGYMDVVALAQLG 283

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
             N V++LGTA T   ++ L +    ++  FDGD  G RAA +A++  L H+     V F
Sbjct: 284 FANAVATLGTACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKVVKF 343

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           + L    DPD+FIR  G  AF   +  ++PL   L +  +E+     P+ RA  +   K 
Sbjct: 344 LFLPPEHDPDTFIREEGTEAFAAEVRNAMPLSRFLLQAVSEDLDLRQPEGRARAQYEAKP 403

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +    LR    + + +         I    G      +  R   ++    R   ++
Sbjct: 404 LLSAMPPGGLRLQIVRGLAEMTG-TTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTA 462

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFV 527
           L            E  +L  L+ +PA+           +    EL   + L   L     
Sbjct: 463 L------------EQKVLRLLMRYPALAAR-LDADTRAQLTAPELPQGEVLSGLLTECDA 509

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                      +RL +  + E    L   V D  +     E    +     Q+ LA    
Sbjct: 510 VGPEMHFGAFVERLGQTPYAEAFAGLRVAVLDDDIEL---EPATQEFDAAVQKMLA---- 562

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629
              L R+ + +++++ +     +A+K    +  L  E+  +  
Sbjct: 563 -EPLRRELDMLQRKM-EGGHASDADK--ERLRWLVSEISRRRR 601


>gi|315656299|ref|ZP_07909190.1| DNA primase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315493301|gb|EFU82901.1| DNA primase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 692

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 142/708 (20%), Positives = 257/708 (36%), Gaps = 101/708 (14%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            +  + ++ +   IPI +++  YV   R+ +          CPFHDEKT SF     +  
Sbjct: 4   KFDPEDLQKVRD-IPIESVVSDYVSLQRKGS-----SLLGLCPFHDEKTASFSVTPVRNM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           ++CF C   GD + F+  + G +F E+V+ LAA AG+ +  V+     KE+     +  L
Sbjct: 58  WHCFGCSQGGDTIDFVQLIEGLTFPEAVEFLAARAGITMHYVEGAAITKERVEPGTRQRL 117

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +    VA DFF   L +   +R   +++ R   S     F +GYAP    +L ++LR KG
Sbjct: 118 LECNRVAQDFFVSQLVSPEAQRARDFVEGRAFTSQDAAHFGMGYAPPGWNNLTDYLRSKG 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235
           F++++I+  GL          YD FR+R+++PI+   G V+ FGGR L   +    KY+N
Sbjct: 178 FTDQEIVTVGLGK--PGQRGIYDVFRDRVMWPIKDVTGAVLGFGGRRLDDSDPQVPKYIN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +PE+ ++HK   LY    A   + K  R           ++VEGY DV++   +G+   V
Sbjct: 236 TPESPIYHKSSVLYGLDLARPNIGKERR----------CVIVEGYTDVMAAHLSGITTAV 285

Query: 296 SSLGTALTEYQLRLLWKLSP--------------------RIVLCFDGDDPGLRAAYKAI 335
           ++ GTA T+   + + +                        ++  FDGD  G  AA KA 
Sbjct: 286 ATCGTAFTDEHAKQIRRFIGTSADSASSLKLPGGLPPRGGEVIFTFDGDAAGQAAALKAF 345

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
                           +   G DP       G  A   LI    PL D + K        
Sbjct: 346 RTDQDFASQ---AFVAVADDGLDPCDLRMQRGPGAVRDLIEGRKPLFDFVLKTIISKYDL 402

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           ++P  R E        +  I+D+ LR  Y + +   L    +      +   R  +   R
Sbjct: 403 DSPAARIEAMRATAPVLAEIRDKALRTEYVKQVSGWLGVNVRDTWYTVNEVWRRIRSQQR 462

Query: 456 HRDQKGPSQR--------------------------------LMQSSLVKGKLSKKPSLR 483
                                                     + Q+ L     +      
Sbjct: 463 ASSANSSQPGGLGGPGNAAGGSEKSANLGNLTGSDASSSPQVIPQTRLDPAVNTDPVWRV 522

Query: 484 EAALLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQ------------- 529
           E  +L+  +  P    +  +  L    +    L+ ++  + +                  
Sbjct: 523 ERDVLIAALQFPGFAAQTAFDTLDPQSFTQPTLRAIFEVIAAVGGAGEYRRLAEVAQAAG 582

Query: 530 ----KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQALA 583
                          +  +    L+  L              ++        + + Q   
Sbjct: 583 EPHPGNVALNRWAAAVKAQAGSVLVGALTNLATRPAPLYEANQSAEETRIAAESWVQNAV 642

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                + L+ Q   ++ Q+ ++ +   + + A +   L  +  ++ ++
Sbjct: 643 ESMERKGLNAQIASLKAQLRRLDS--NSPEKAEVFGKLINLENRMREL 688


>gi|255011356|ref|ZP_05283482.1| putative DNA primase [Bacteroides fragilis 3_1_12]
          Length = 667

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 159/680 (23%), Positives = 288/680 (42%), Gaps = 70/680 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I  ++  +V   +R  N     Y   CPFH+EKTPSF  + SKG  
Sbjct: 2   IDQATIDRILDAAQIVEVVSDFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPSKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CFSC   G+ + F+      S+ E+++ LA    + +   +   E+KE    +  +  +
Sbjct: 57  KCFSCGKGGNAVHFIMEHEQMSYPEALRYLAKKYNIEIKERELTNEEKEVQSNRESMFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y  +RG     I+ F+LG++ + R +L +   +KGF
Sbjct: 117 NNFARDYFQNILKNHVDGRSIGLAYFRQRGFRDDIIDKFQLGFSTEGRDALAQEAMRKGF 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
            +E +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR LS       KY+NS
Sbjct: 177 KKEFLVKTGLCYET-DDHKLRDRFWGRVIFPVHTLSGKVVAFGGRVLSTENKKLAKYVNS 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+GV+NVV+
Sbjct: 236 PESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVVA 285

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S GT+LT  Q+RL+ + +  I + +DGD  G++A+ + ID+    L  G  +   LL  G
Sbjct: 286 SSGTSLTPGQIRLIHRFTNNITVLYDGDMAGIKASIRGIDM---LLEEGMNIKVCLLPDG 342

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPDSF R +  T F+  I E          +     +   P +RAEL   +   I  I 
Sbjct: 343 DDPDSFARKHNATEFQNFIQEHETDFIRFKAQLLMEDAGKDPMKRAELINDIVRSIAVIP 402

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS------ 470
           +  +R  Y +     L+   +  ++E +       +          +             
Sbjct: 403 EAIVRDVYIKECGQLLRIEDKLLVSEVAKRRELQAEKGNKPAVTNHAPVPEAGEIPPPFP 462

Query: 471 -------------LVKGKLSKKPSLREAALLLTLINHPA-----------------ILQE 500
                          +GK  ++    E  ++  +I +                   +++ 
Sbjct: 463 PEEAEIDTYQSFIPQEGKEGQEFYKYERLIIQMIIRYGERVMCNMTDEEGNEVPVTVVEY 522

Query: 501 QYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
              +L   ++ + N   +++ S       EQ++           +     +  +L     
Sbjct: 523 VINDLKEDELAFHNPLHRRILSEAAEHIREQEFASERFFVAH-PDPAISTIATELASDRY 581

Query: 559 DAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
               + + T+  + D  + Y+    L +  +  +++ + + I   +       +  +   
Sbjct: 582 QLSKYHSKTQKLVTDEERLYEMVPMLMINFKNAIVAEELKHIMYALQDPAIANDNAQCDA 641

Query: 617 LISILHEVHIQIHQIESQEA 636
           ++    E+     +I++  A
Sbjct: 642 VMQRYKEMK----EIQNLMA 657


>gi|219683599|ref|YP_002469982.1| DNA primase [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621249|gb|ACL29406.1| DNA primase [Bifidobacterium animalis subsp. lactis AD011]
          Length = 693

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 154/718 (21%), Positives = 257/718 (35%), Gaps = 103/718 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I+ +     + +++   V           G Y   CPFHDE+TPSF+   S G +
Sbjct: 5   IKKEDIERVRNAADLYDIVSATVALKPSG----VGAYVGLCPFHDERTPSFNVRPSVGSW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTDLIR 119
           +CF C   GD   F+       F E+V+ LA    + L   +        +   +  L+ 
Sbjct: 61  HCFGCGRGGDVFRFVQEQENIDFREAVELLADKYHIELHYENAGGANDSHRGTKRARLLE 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             E A  FF   +           L  R         F  GYAP    +L  HL  KGF+
Sbjct: 121 ANEEAQKFFVSQILTEEALPARKLLAGRNFSQQDCARFGCGYAPQGWDNLVRHLADKGFT 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
           ++++++AGL      +   YD FR R  +PIR S G+ + FG R L   +S+  KY+N+P
Sbjct: 181 QQEMLDAGLARQ--GARGIYDYFRGRATWPIRDSTGRTLGFGARKLYDDDSIAAKYINTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T L+HK + LY    A   + K             +++VEGY DV+++  AGV   V++
Sbjct: 239 DTQLYHKNQVLYGIDLAKPQIVKK----------RQVVIVEGYTDVMAMHLAGVDTAVAT 288

Query: 298 LGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAI 335
            GTA  E   +++ +L                        RIV  FDGD  G +AA  A 
Sbjct: 289 CGTAFGEEHAKIVRRLISDDSLGGVQLTGPLRVEGEPLSSRIVFTFDGDAAGQKAALHAF 348

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
            L         +    +     DP       G  A   L+V + PL D +          
Sbjct: 349 GLDSSFQT---QTFVAVADNNLDPCDLRIERGDDALRALVVNARPLYDFVIDVAIGKFDT 405

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---- 451
                +      +   I  IKD+ L   Y++    R+         E     R       
Sbjct: 406 QYGTGQMGAVKAVAPLIARIKDKSLLDLYTRKAARRIGIDLTILQREVQSARRAQHVPNE 465

Query: 452 -----------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR--------EAALLLTLI 492
                      +N     ++ P        + +G    +   R        E   + TL+
Sbjct: 466 DAYASRQRGYDRNYEREREQPPMNEARMREIERGNARSQHFHRIDDNVFITEMQFMATLV 525

Query: 493 NHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLPEEIHQRLCERG---FG 547
             P ++  E ++ L    +     Q ++  + +     +    P +    L + G     
Sbjct: 526 QIPRVVNAELFKALTVHCFSTPVFQTMFEAVEAAGGLPEPGTSPGQWLHALTKAGGPLLA 585

Query: 548 ELLKQLD-------------------RQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            ++ +L                    +Q   +       EA+    RQ   Q  A     
Sbjct: 586 PVITELAVMNLPLPQNMANGNAAQTGQQEPGSQSAQPMPEASAEQ-RQYANQLTASLIDT 644

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
             + R+   + +Q ++ T   +      L   + EV  +   ++SQ      FG  +G
Sbjct: 645 GYM-RRIGILRQQASRATNTHDQ---IRLFGAITEVERERKDLQSQI-----FGSAAG 693


>gi|301164685|emb|CBW24244.1| putative DNA primase [Bacteroides fragilis 638R]
          Length = 667

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 156/680 (22%), Positives = 289/680 (42%), Gaps = 70/680 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I  ++  +V   +R  N     Y   CPFH+EKTPSF  + SKG  
Sbjct: 2   IDQATIDRILDAAQIVEVVSDFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPSKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CFSC   G+ + F+      S+ E+++ LA    + +   +   E+KE    +  +  +
Sbjct: 57  KCFSCGKGGNAVHFIMEHEQMSYPEALRYLAKKYNIEIKERELTNEEKEVQSNRESMFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y  +RG     I+ F+LG++ + R +L +   +KGF
Sbjct: 117 NNFARDYFQNILKNHVDGRSIGLAYFRQRGFRDDIIDKFQLGFSTEGRDALAQEALRKGF 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
            +E +++ GL  +  +     DRF  R++FP+ +  G+V+AFGGR LS       KY+NS
Sbjct: 177 KQEFLVKTGLCYET-DDHKLRDRFWGRVMFPVHTLSGKVVAFGGRVLSTENKKLAKYVNS 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+GV+NVV+
Sbjct: 236 PESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVVA 285

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S GT+LT  Q+RL+ + +  I + +DGD  G++A+ + ID+    L  G  +   LL  G
Sbjct: 286 SSGTSLTPGQIRLIHRFTNNITVLYDGDMAGIKASIRGIDM---LLEEGMNIKVCLLPDG 342

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPDSF R +  T F+  I E          +     +   P +RAEL   +   I  I 
Sbjct: 343 DDPDSFARKHNATEFQNFIQEHETDFIRFKAQLLMEDAGKDPMKRAELINDIVRSIAVIP 402

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS------ 470
           +  +R  Y +     L+   +  ++E +       +          +             
Sbjct: 403 EAIVRDVYIKECGQLLRIEDKLLVSEVAKRRELQAEKGNKPIASNNAPTPQPGEMPPPFP 462

Query: 471 -------------LVKGKLSKKPSLREAALLLTLINHPA-----------------ILQE 500
                          +GK  ++    E  ++  ++ +                   +++ 
Sbjct: 463 PEEMEADTYQSFIPQEGKEGQEFYKYERLIIQMIVRYGEKVMCNLTDEEGNEVPVTVVEY 522

Query: 501 QYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
              +L   ++ + N   +++ S       +Q++           +     +  +L     
Sbjct: 523 VINDLKEDELAFHNPLHRRILSEASEHIHDQEFASERFFVAH-PDPKISTIATELASDRY 581

Query: 559 DAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
               + + T+  + D  + Y+    L +  +  +++ + + I   +   +   +  +   
Sbjct: 582 QLSKYHSKTQKLVTDEERLYEMVPMLMINFKNAIVAEELKHIMYALQDPSIANDNAQCDA 641

Query: 617 LISILHEVHIQIHQIESQEA 636
           ++    E+     +I++  A
Sbjct: 642 VMQRYKEMK----EIQNLMA 657


>gi|296159637|ref|ZP_06842460.1| DNA primase [Burkholderia sp. Ch1-1]
 gi|295890081|gb|EFG69876.1| DNA primase [Burkholderia sp. Ch1-1]
          Length = 622

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 168/652 (25%), Positives = 276/652 (42%), Gaps = 56/652 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPPSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-------- 114
           +CF C   G  + FL   +G SF E+V  LA   G+ +P                     
Sbjct: 57  HCFGCGAHGTAIGFLMEHVGSSFPEAVNELAQSVGLTVPNEPSPGYGGGGSGGYAPAASK 116

Query: 115 ---TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---S 168
              T L  +++ A DF+   L++        YL +RG+       F LGYAPD      +
Sbjct: 117 AVTTALSDVMQTACDFYRKQLRS--APVAIQYLKKRGLTGEIAARFGLGYAPDGWQNLEA 174

Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
              + R     E  ++      D       YDRFR R++FPIR+ +GQVI FGGR L  G
Sbjct: 175 AFPNYRDDSLVESGLVIVSEKSDAQGQNRRYDRFRERVMFPIRNVKGQVIGFGGRVLDGG 234

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
           E  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L Q
Sbjct: 235 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQHYVLVVEGYMDVVALAQ 283

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
            G QN V++LGTA T   ++ L + +  ++  FDGD  G RAA +A+D  L H      +
Sbjct: 284 LGFQNAVATLGTACTPIHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRTI 343

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
            F+ L    DPDS++R YG  AF + +  ++PL   +       +  + P+ +A      
Sbjct: 344 RFLFLPAEHDPDSYVREYGTEAFAEQVERAMPLSQFMLNEVLTGKELDQPEGKARALFDA 403

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           K  +  +    LR        DRL   F +         R          +K        
Sbjct: 404 KPLLQALPANALRAQIMHMFADRLDVPFDEVAALCEVDSRIAAAARAAPARKDRRSVTG- 462

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                          E   L  L+ HP  +    +E            +L+  + +    
Sbjct: 463 --------------IEEKTLRNLVMHPRTVAVLDEEAEQALLTVTRHGELFEEVTTHARA 508

Query: 529 QKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQA 581
                  ++   L   G     F E+ +++     +    L     +A +++ R+  ++ 
Sbjct: 509 LGDSAEFQLLSDLLRNGANAPTFEEIFRKILDYDENVRDLLLKDPEDATVIEERREQERI 568

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +    +  +L  + +    ++ Q++ +     T    + L E++ +   ++ 
Sbjct: 569 VGEELKAAILKMRYDAYCDRLEQLSRQSRH--TPEEFAELSELNRKRADMKR 618


>gi|124382161|ref|YP_001025511.1| DNA primase [Burkholderia mallei NCTC 10229]
 gi|126446300|ref|YP_001077576.1| DNA primase [Burkholderia mallei NCTC 10247]
 gi|254359398|ref|ZP_04975670.1| DNA primase [Burkholderia mallei 2002721280]
 gi|126239154|gb|ABO02266.1| DNA primase [Burkholderia mallei NCTC 10247]
 gi|148028585|gb|EDK86545.1| DNA primase [Burkholderia mallei 2002721280]
 gi|261826679|gb|ABM99705.2| DNA primase [Burkholderia mallei NCTC 10229]
          Length = 624

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 173/656 (26%), Positives = 275/656 (41%), Gaps = 65/656 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111
           +CF C   G  + FL    G +F E+VQ LA   G+ +P             D       
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSPMRGGGGSSDGHAPPAA 116

Query: 112 KIQ--TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167
                T L  +++ A D++   L+         YL  RG+       F LGYAPD     
Sbjct: 117 SKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQNL 174

Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
            +  +  R     +  ++      D +  A  YDRFR R++FPIR+ +GQVI FGGR L 
Sbjct: 175 EAAFDDYRHDSLVDAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLD 234

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
            GE  KYLNSPET LF+KG  LY  F A   ++             + ++VEGYMDV++L
Sbjct: 235 GGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVAL 283

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
            Q G  N V++LGTA T   ++ L + +  +V  FDGD  G RAA +A++  L H     
Sbjct: 284 AQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNR 343

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
            + F+ L    DPDS++R +G  AF + +  ++PL   L    T  +  + P+ RA+   
Sbjct: 344 TIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALF 403

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             K  +  +    LR        DRLQ  F +         R                  
Sbjct: 404 DAKPLLQALPANALRAQIMHMFADRLQIPFDEVAALAEVDARIA---------------A 448

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
                      ++ +  E   L  L+ HP I      E          + +L+  +    
Sbjct: 449 PARQAPARNERRRVTESEKRALRNLVMHPRIAAAIDDESVATLRALPRIGELFDEVIGHA 508

Query: 527 VEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGY 578
                      L + +        + E+ +++   +  VRD    +  ++A    +R+  
Sbjct: 509 RALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYNENVRDLMQQNPESDAAQEGLRERE 568

Query: 579 Q------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +      QA  L  R+     +   + K+     +  E  +   L   L ++  ++
Sbjct: 569 RIAGEELQAAVLKMRYDACCDRLNSLSKR--SAPSSEELAEIKDLHQNLADMKRRL 622


>gi|89900987|ref|YP_523458.1| DNA primase [Rhodoferax ferrireducens T118]
 gi|89345724|gb|ABD69927.1| DNA primase [Rhodoferax ferrireducens T118]
          Length = 625

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 188/655 (28%), Positives = 286/655 (43%), Gaps = 58/655 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P+ FI++LL    +  ++G+YV   +   N     +   CPFH EK+PSF  + SK 
Sbjct: 1   MSIPQTFIQELLARADVVEIVGRYVQLKKGGAN-----FMGLCPFHGEKSPSFSVSPSKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQ 114
           FY+CF C   GD +SFL    G +F+E+VQ LA   G+ +P  D   +      ++ + Q
Sbjct: 56  FYHCFGCGKNGDAISFLMEHAGMTFVEAVQDLAQQYGLQVPEDDASPQDRARALEQRQKQ 115

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
           T L  ++E A D +   LK +   R   YL  RG+     + F LGYAP+   SL     
Sbjct: 116 TTLTDVLERANDAYRKQLKES--PRAVDYLKGRGVSGEIAKQFGLGYAPEGWRSLASVF- 172

Query: 175 QKGFSEEKIIEAGLLI----DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
              + +  ++E+GL+I    +       YDRFR+R++FPIR+ +G+ I FGGR L   + 
Sbjct: 173 -PSYDDPLLVESGLVILNVDENSGEEKRYDRFRDRVMFPIRNVKGECIGFGGRVL-GDDK 230

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET +F KG+ LY  F A N L              + ++ EGYMDV++L Q G
Sbjct: 231 PKYLNSPETPVFSKGRELYGLFEARNALH----------EQGYALVTEGYMDVVALAQLG 280

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
             N V++LGTA T   L  L++ +  +V  FDGD  G RAA KA+D  L        V F
Sbjct: 281 FSNAVATLGTACTAEHLHKLFRFTDAVVFSFDGDAAGRRAARKALDGALPFATDVRSVKF 340

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           + L    DPDSFIR +GK AF + + E++PL   L     E    NT + RA    + K 
Sbjct: 341 LFLPPEHDPDSFIREFGKEAFARYVSEAVPLSRFLIDAAREGCDLNTAEGRAHFASNAKP 400

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYIT-----------EHSGYGRYWKKNARHRDQ 459
               + D  L+      I D +Q   ++                S        +      
Sbjct: 401 LWLLLPDGALKLQLLSEIADLVQLSSRELTEVWNPSAAGKGNAKSKTYEKHSASPNEYGG 460

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE-LQKL 518
                 +      +     +P+ R       L+   A L+    E   +  D  E    L
Sbjct: 461 YSQKSSIKPPPRPRPGGRVRPTSRADYAARLLLGDMAALEVLSAEDHTLLCDLPEPHGPL 520

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           + +L +   E        + + L  R   EL  +L      AG     T+ +  ++R   
Sbjct: 521 FVWLENQLHEHGPQAWVALREGLRGRQEEELAVRLMTGYELAG--PLETDESSKELRDLL 578

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            + L    + +          + I    A   A      +    E+  +  ++ES
Sbjct: 579 NRMLVEKLKVQE--------TEAIQAAKADPGA------LQRYRELQARRFKLES 619


>gi|299066182|emb|CBJ37366.1| DNA primase [Ralstonia solanacearum CMR15]
          Length = 603

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 181/643 (28%), Positives = 286/643 (44%), Gaps = 59/643 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTD--L 117
           +CF C   G  + FL    G S++E+++ LA  AG+ +P      P   + E+      L
Sbjct: 57  HCFGCGAHGSAIGFLMEFSGLSYVEAIRDLAQSAGMVVPEERGGLPPAARAERQAKTVAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             ++  A+D +   L+ A       YL  RG+       F LGYAPD   SL        
Sbjct: 117 GDVMARASDHYRKQLRGAPGA--VQYLKGRGLTGEIAGHFGLGYAPDDWQSLESVFGAYR 174

Query: 178 FSEEKI--IEAGLLIDGDN-----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
                   IEAGL+I+ +          YDRFR+R++FPIR+++G VI FGGR L +GE 
Sbjct: 175 DDAIATPLIEAGLVIESEKTDADGRHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF KG  LY  F A N ++             ++++VEGYMDV++L Q G
Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFGYVLVVEGYMDVVALAQLG 283

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
             N V++LGTA T   ++ L +    ++  FDGD  G RAA +A++  L H+     V F
Sbjct: 284 FANAVATLGTACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKIVKF 343

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           + L    DPD+FIR  G  AF   +  ++PL   L +  TE+     P+ RA  +   K 
Sbjct: 344 LFLPHEHDPDTFIREEGTEAFAAEVRNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKP 403

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +    LR    + + + +       I    G      +  R   ++    R   ++
Sbjct: 404 LLSAMPPGGLRLQIVRGLAE-VTGTTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTA 462

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFV 527
           L            E  +L  L+ +PA+           +    EL   + L   L     
Sbjct: 463 L------------EQKVLRLLMRYPALAAR-LDADTRTQLTAPELPQGEMLSGLLAECDT 509

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                      +RL +  + E    L   V +  +     E    +     Q+ LA    
Sbjct: 510 AGPEMHFGAFVERLGQTPYAEAFAGLRVAVLNDDIEL---EPATQEFDVAVQKMLA---- 562

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629
              L R+ + +++++ +     +A+K    +  L  E+  +  
Sbjct: 563 -EPLRRELDMLQRKM-EGGHATDADK--ERLRWLVSEISRRRR 601


>gi|167583911|ref|ZP_02376299.1| DNA primase [Burkholderia ubonensis Bu]
          Length = 624

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 172/656 (26%), Positives = 276/656 (42%), Gaps = 65/656 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-------------DPKIEK 109
           +CF C   G  + FL    G SF E+VQ LA   G+ +P                 +   
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLSFPEAVQELAQSVGLTVPHEPSPMRGGGGGGDYPSQPAV 116

Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167
            + + T L  ++  A D++   L+         YL +RG+       F LGYAPD     
Sbjct: 117 SKSVATALSDVMAAACDYYRKQLRG--APAAIQYLKKRGLTGEVAARFGLGYAPDGWQNL 174

Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
            +     R     E  ++      D    A  YDRFR R++FPIR+ +GQVI FGGR L 
Sbjct: 175 EAAFPDYRDDALVESGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLG 234

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
            GE  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L
Sbjct: 235 SGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVAL 283

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
            Q G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A++  L H     
Sbjct: 284 AQLGFPNAVATLGTACTPIHVQKLMRQTDTVIFSFDGDAAGRRAARRALEACLPHAADNR 343

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
            + F+ L    DPDS++R +G  AF + +  ++PL   L       ++ + P+ RA+   
Sbjct: 344 TIRFLFLPTEHDPDSYVREFGADAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALF 403

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             K  +  +    LR        DRL   F++         R      +           
Sbjct: 404 DAKPLLQALPANALRAQIMHMFADRLDIPFEEVAGLSDVDTRLAAPPRQ----------- 452

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
                      ++ +  E   L  L+ HP +  +   E          + +L+  +    
Sbjct: 453 ----APARSDRRRVTDNEKRALRNLVMHPRVAVQLDDEQVATLRALPRIGELFGEVVDHA 508

Query: 527 VEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGY 578
                      L + +        + E+ +++   D  VRD  L +   EA     R+  
Sbjct: 509 RALGDGAEFRLLSDVLRTSSNAATYEEIFREILDYDENVRDLLLQNPDDEAVPERQREQE 568

Query: 579 Q------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +      QA  L  R+     + + + +Q        E  +   L     ++  ++
Sbjct: 569 RIAGEELQAAVLKMRYDACCDRLDRLSRQ--STFTPEERAELTELNQQRADMKRRL 622


>gi|83717428|ref|YP_438820.1| DNA primase [Burkholderia thailandensis E264]
 gi|167615341|ref|ZP_02383976.1| DNA primase [Burkholderia thailandensis Bt4]
 gi|257141904|ref|ZP_05590166.1| DNA primase [Burkholderia thailandensis E264]
 gi|83651253|gb|ABC35317.1| DNA primase [Burkholderia thailandensis E264]
          Length = 625

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 173/657 (26%), Positives = 279/657 (42%), Gaps = 66/657 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--------------KIE 108
           +CF C   G  + FL    G +F E+VQ LA   G+ +P                     
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSPMRGAGGGSGEGYAPPA 116

Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY- 167
             + + T L  +++ A D++   L+         YL  RG+       F LGYAPD    
Sbjct: 117 ASKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQN 174

Query: 168 --SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
             +  +  R     +  ++      D + +A  YDRFR R++FPIR+ +GQVI FGGR L
Sbjct: 175 LEAAFDDYRHDSLVDAGLVIVSDKTDANGAARRYDRFRERIMFPIRNVKGQVIGFGGRVL 234

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
             GE  KYLNSPET LF+KG  LY  F A   ++             + ++VEGYMDV++
Sbjct: 235 DGGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVA 283

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           L Q G  N V++LGTA T   ++ L + +  +V  FDGD  G RAA +A++  L H    
Sbjct: 284 LAQLGFPNAVATLGTACTPVHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADN 343

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             + F+ L    DPDS++R +G  AF + +  ++PL   L    T  +  + P+ RA+  
Sbjct: 344 RTIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKAL 403

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              K  +  +    LR        DRL+  F +         R                 
Sbjct: 404 FDAKPLLQALPANALRAQIMHMFADRLRIPFDEVAALAEVDARIA--------------- 448

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                       ++ +  E   L  L+ HP I      E A        + +L+  +   
Sbjct: 449 APARQAPARSERRRVTDSEKRALRNLVMHPRIAAVLDDESAATLRALPRIGELFDEVIGH 508

Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577
            +          L + +        + E+ +++   D  VRD    +  ++A    +R+ 
Sbjct: 509 ALALGEGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDAAQEGLRER 568

Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +      QA  L  R+     +   + K+     +  E  +   L   L ++  ++
Sbjct: 569 ERIAGEELQAAVLKMRYDACCDRLNSLSKR--SAPSSEELAEIKDLHQNLADMKRRL 623


>gi|91777316|ref|YP_552524.1| DNA primase [Burkholderia xenovorans LB400]
 gi|91689976|gb|ABE33174.1| DNA primase [Burkholderia xenovorans LB400]
          Length = 622

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 168/652 (25%), Positives = 276/652 (42%), Gaps = 56/652 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPPSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-------- 114
           +CF C   G  + FL   +G SF E+V  LA   G+ +P                     
Sbjct: 57  HCFGCGAHGTAIGFLMEHVGSSFPEAVNELAQSVGLTVPNEPSPGYGGGGSGGYAPAASK 116

Query: 115 ---TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---S 168
              T L  +++ A DF+   L++        YL +RG+       F LGYAPD      +
Sbjct: 117 AVTTALSEVMQTACDFYRKQLRS--APVAIQYLKKRGLTGEIAARFGLGYAPDGWQNLEA 174

Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
              + R     E  ++      D       YDRFR R++FPIR+ +GQVI FGGR L  G
Sbjct: 175 AFPNYRDDSLVESGLVIVSEKSDAQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVLDGG 234

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
           E  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L Q
Sbjct: 235 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQHYVLVVEGYMDVVALAQ 283

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
            G QN V++LGTA T   ++ L + +  ++  FDGD  G RAA +A+D  L H      +
Sbjct: 284 LGFQNAVATLGTACTPIHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRTI 343

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
            F+ L    DPDS++R YG  AF + +  ++PL   +       +  + P+ +A      
Sbjct: 344 RFLFLPAEHDPDSYVREYGTEAFAEQVERAMPLSQFMLNEVLTGKELDQPEGKARALFDA 403

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           K  +  +    LR        DRL   F +         R          +K        
Sbjct: 404 KPLLQALPANALRAQIMHMFADRLDVPFDEVAALCEVDSRIAAAARAAPARKDRRSVTG- 462

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                          E   L  L+ HP  +    +E            +L+  + +    
Sbjct: 463 --------------IEEKTLRNLVMHPRTVAVLDEEAEQALLTVTRHGELFEEVTTHARA 508

Query: 529 QKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQA 581
                  ++   L   G     F E+ +++     +    L     +A +++ R+  ++ 
Sbjct: 509 LGDSAEFQLLSDLLRNGANAPTFEEIFRKILDYDENVRDLLLKDPEDATVIEERREQERI 568

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +    +  +L  + +    ++ Q++ +     T    + L E++ +   ++ 
Sbjct: 569 VGEELKAAILKMRYDAYCDRLEQLSRQSRH--TPEEFAELSELNRKRADMKR 618


>gi|225858885|ref|YP_002740395.1| DNA primase [Streptococcus pneumoniae 70585]
 gi|225721810|gb|ACO17664.1| DNA primase [Streptococcus pneumoniae 70585]
          Length = 586

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 147/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G +F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPYQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T+
Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTV 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKRSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENGENLQAQIEFLEKIAPLIVQEKSIAA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 457 MRAEVHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|327314006|ref|YP_004329443.1| DNA primase [Prevotella denticola F0289]
 gi|326945517|gb|AEA21402.1| DNA primase [Prevotella denticola F0289]
          Length = 723

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 151/666 (22%), Positives = 275/666 (41%), Gaps = 54/666 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  +  ++    I  +I  +V   +  T      Y   CPFHD++TPSF  +  KG Y
Sbjct: 82  IDRPTVDRIMNAANIVEVISDFVSLRKAGT-----SYKGLCPFHDDRTPSFSVSPVKGVY 136

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CFSC   G+ + F+      ++ E+++ LA    + +       + +++E  +  +  +
Sbjct: 137 KCFSCGAAGNVVKFIMEHEQMTYPEALKWLANKYHIEVHERELTTEEKQQENERESMFLV 196

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +F + L N  D       Y   RG     I  F+LG+    R++  +   + GF
Sbjct: 197 NEWAARYFENILHNDVDGMAVGMQYFRSRGFRDDIIRKFQLGFCLSGRHAFADAALKAGF 256

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
               +I+ GL      +    DRF  R++FP     G+V AFGGR L    KG + KY+N
Sbjct: 257 QRTFLIKTGLC-FERENGELVDRFNGRVMFPWIGVSGKVTAFGGRLLDARTKGVTQKYVN 315

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP+++++HK + LY  F A   + K             + +VEGY DV+S+ Q G++NVV
Sbjct: 316 SPDSVIYHKERELYGIFQAKKAIAKY----------DLVYMVEGYTDVVSMHQCGIENVV 365

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ +Q+RLL + +  IVL +DGD  G  AA +  D++L     G  V  +LL  
Sbjct: 366 ANSGTALSVHQIRLLHRFTSNIVLLYDGDAAGQHAALRGTDMLLSE---GMNVKVLLLPD 422

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPD F R +    F + I ++     +       N   +       +   +++     
Sbjct: 423 GKDPDEFARSHSAEDFRRYIEDNQTDFIVFKINILLNGVTDPVKRSEAVSSIVRSVSVI- 481

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEH-SGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           KD  LR  Y +   +R     +  + +         ++  R + Q+  +    Q+     
Sbjct: 482 KDPILRDTYIRECANRTGVSERTLMEQMNRNIYSDREQQTREQQQQRAAIIQQQTDGQAA 541

Query: 475 KLSKKPSLREAALLLTLINHPA--ILQEQYQEL-------------------ADIRYDNN 513
             + +    E  L+  ++      I ++   E                     ++ + + 
Sbjct: 542 VPAPQVPEVEQMLMQVIVRDGEKVIFRDVKDEESGQLYSLTVAQYIAFDLGSDNLGFSDP 601

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK-QLDRQVRDAGLWSATTEANIV 572
              ++         E+ +   E   Q          +K  +DR      L    TE  + 
Sbjct: 602 LYARMLQEAVEHSGEENFKAEEYFMQHPDIHVASAAVKLGVDRFQLSESLQVKETEKTLC 661

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           D        +A + R   +S   +E+  ++ QV   GE ++    I  +  +  ++ +  
Sbjct: 662 D---RVVHLIADF-RLDYVSSHLKELNARLTQVKDAGEMKEIMEEIMKIQTLRNKLAKKL 717

Query: 633 SQEAMI 638
             + ++
Sbjct: 718 GSDILV 723


>gi|109897364|ref|YP_660619.1| DNA primase [Pseudoalteromonas atlantica T6c]
 gi|109699645|gb|ABG39565.1| DNA primase [Pseudoalteromonas atlantica T6c]
          Length = 588

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 161/625 (25%), Positives = 284/625 (45%), Gaps = 53/625 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR+FI DL+    I  ++   V   +   N     Y ACCPFH+EK+PSF  +  K F
Sbjct: 4   RIPREFIDDLIARTDIVEVVDNRVKLKKAGRN-----YQACCPFHNEKSPSFTVSQDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117
           Y+CF C   G+ +SFL       F E+++ LA    V +P           ++++ + D 
Sbjct: 59  YHCFGCGAHGNVISFLMEYDRLEFPEAIEELAQYHSVDVPREKSSTPAPTAEQKQQKADD 118

Query: 118 IRLIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             L+E  + +F   LK   DK +   YL +RG+    ++ F +GYAP    ++     + 
Sbjct: 119 YELMETISRYFSQQLKVHSDKDKAIDYLKKRGLSGEVVKAFGIGYAPTEWDAVLSTFGRT 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
             +++++++  L I  +++   +D FR R++FPIR  RG+++ FGGR L    + KYLNS
Sbjct: 179 PEAQQQLLDLKL-ITENDNRRRFDFFRERIMFPIRDKRGRIVGFGGRVL-GDGTPKYLNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +FHKG  LY F+ A    +   R          +++VEGYMDV++L Q  ++  V+
Sbjct: 237 PETRIFHKGNELYGFYQAKQAHRNLPR----------VMIVEGYMDVVALAQFDIKYAVA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGTA T   +++L++ +  +V C+DGD  G  AA++A++  L +L  G  + F+ L  G
Sbjct: 287 SLGTATTPEHIQMLFRTTSEVVCCYDGDRAGREAAWRALENALAYLKDGVEMKFLFLPDG 346

Query: 357 EDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           EDPD+ +R  GK AF +KL+ +S+PL    +    +     + + +A L+      I  I
Sbjct: 347 EDPDTLVRQIGKEAFEQKLVSDSVPLSKFFFDNLLQRHHIGSAEGKAALKAEAMPLIEQI 406

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                R   +  +   +    +  + +        K  A+          L  ++L K K
Sbjct: 407 LGDNQRAILTSELSTHMGDRNRHRLEQDVAKANQHKAGAK----------LDFTALNKAK 456

Query: 476 LSKKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           +S         ++  L++ P I  E       A        L  L + LF   + +    
Sbjct: 457 ISPI-----RMMIRLLLDQPGIAIECQHANPAALGDMQVPGLDFL-NELFQFCLGKPSAN 510

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             ++ +   +    + L +L              E    +    ++ + A    +     
Sbjct: 511 TAQVLEHFRDHPQSKNLAKLLGW-----------EYAEENQALVFKDSFAKLLDWHF-KS 558

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILI 618
           + +E+  +        + ++   L+
Sbjct: 559 RMDELMSKARLGNLSVDEKQELNLL 583


>gi|58337479|ref|YP_194064.1| DNA primase [Lactobacillus acidophilus NCFM]
 gi|227904115|ref|ZP_04021920.1| DNA primase [Lactobacillus acidophilus ATCC 4796]
 gi|58254796|gb|AAV43033.1| DNA primase [Lactobacillus acidophilus NCFM]
 gi|227868134|gb|EEJ75555.1| DNA primase [Lactobacillus acidophilus ATCC 4796]
          Length = 616

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 147/654 (22%), Positives = 287/654 (43%), Gaps = 55/654 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P +FI ++  ++ I ++I QYV  +++       DY   CPFH EKTPSF  N+ K F
Sbjct: 4   RIPEEFIAEVRNNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNEEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESV+++A  A + +P               ++++ 
Sbjct: 59  FKCFGCGKGGNVFKFLMYKDNLTFPESVEQVAEYAHMSMPEGYGNSSPV--KLNPIMQMH 116

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             A +F+   L   +  +R   Y  +R +    +  FK+GYAP     L  +LR KG+ +
Sbjct: 117 RDAVEFYQQVLFTTKAGERGMQYAQKRELGRDILNHFKIGYAPKEDNVLITYLRGKGYKD 176

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
           + + ++GL +   +    +DRFR+RL+FP+ +  G  I F GR +S  ++  KY+NSPET
Sbjct: 177 DDLTQSGLFVQSQDG-QLFDRFRDRLMFPLDNENGMTIGFSGRRISDDKTEAKYMNSPET 235

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K K L++F  A    +            + ++L EGYMDV++  +AG+++ ++S+G
Sbjct: 236 GIFNKSKVLFHFAEAKKAAR----------DENHLVLYEGYMDVIAAYKAGIKSGIASMG 285

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LT+ Q+ +L +++  I++ +DGDDPG+ A  +A++L          +  V+L    DP
Sbjct: 286 TSLTDDQVYMLRRVTSNIIINYDGDDPGIHAEERAVNLFNK--DGDFNLGVVVLPEKLDP 343

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YG   +   +  +L   +   KR  +  + +   E+          I+ +++  
Sbjct: 344 DEYVKKYGAEKYYDEVKGALTPTEFFLKRLAQKYNLDNDREKLTYISEAVKQISLVRNPV 403

Query: 420 LRYYYSQAIRD----RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +  Y + +       +  L      E     R   +  ++++    S   + + +   +
Sbjct: 404 EQDMYIERLAKSAQVSIDALKANLARERRKNNRVQSRTRQYKNYPNRSNNTVDTLIPPEQ 463

Query: 476 LSK--------KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             +        +    +  LL   I+     +       +  + + E +KL         
Sbjct: 464 PIELSIKQTEVEKHPSQTRLLYLFIHSTEAQKYLLN--GNFHFPDKEFEKLAELWVKYSE 521

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                        + E+        L   + DA L    T+ NI ++ +          +
Sbjct: 522 THNDPQINGFLDFIPEQ--------LQGIIIDAELAKTPTDFNIQEINEHVHA-----LK 568

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
            R +  +  E++ ++     K +A++   +   +  +   +      EA  E F
Sbjct: 569 KRNIYSRLNELQIELQDAKRKEDAQEIIKITQEILGLKRIL------EANKEAF 616


>gi|172036476|ref|YP_001802977.1| DNA primase [Cyanothece sp. ATCC 51142]
 gi|171697930|gb|ACB50911.1| DNA primase [Cyanothece sp. ATCC 51142]
          Length = 652

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 154/649 (23%), Positives = 295/649 (45%), Gaps = 34/649 (5%)

Query: 1   MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           MN+P    D ++++   I I  ++  YV   +R  N     Y   CPFH EKTPSF  N 
Sbjct: 9   MNFPRLHPDTLEEVKEKIDIYEVVSDYVVLKKRGQN-----YVGLCPFHQEKTPSFTVNQ 63

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---- 113
           +K  YYCF C   G+ + FL  +   SF + V  LA    VP+  ++P+  ++ +     
Sbjct: 64  TKQLYYCFGCGEGGNGIKFLMEIGQQSFTQVVLELAKRYQVPIKTLEPEKRQEIQKELSL 123

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH 172
           +  L  ++ + ++F+ H+L+    +    Y   +R +    I+ F LGYAP    +L  +
Sbjct: 124 RDQLYEIVALTSNFYEHALQEPLGENALNYLTQKRLLKFQTIQQFNLGYAPSGWETLYRY 183

Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
            + QK +    + +AGL+         YD FR+RL+ PI+  +G++IAFGGR+L   E  
Sbjct: 184 LVEQKRYPIALVEQAGLIKPRKKGNGYYDTFRDRLMIPIKDIQGRIIAFGGRSL-TDEEP 242

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSP+T LF+KGK L+    A N ++          S   +I+VEGY D ++L +AG+
Sbjct: 243 KYLNSPDTPLFNKGKILFALDQAKNSIR----------SLDKVIVVEGYFDAIALHEAGI 292

Query: 292 QNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348
            N V+SLGTA +E QL+ L + +   +++  FD D+ G++A  +AI ++          +
Sbjct: 293 TNTVASLGTAFSESQLKQLLRYTDSKQVIFNFDADNAGIKATQRAITEIESLIYSGQVNL 352

Query: 349 NFVLLSRGEDPDSFIRCYG--KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
             + +  G+D D FI+ +      +++LI ++   ++   ++   +++    D   ++  
Sbjct: 353 KILNIPDGKDADEFIKSHSDGVEKYQELIEKAPLWLNWEIQQLLIDKNLKQADHFEQVAQ 412

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            +   +N + D   R YY     + L Q   + +  +    +        +  +  + + 
Sbjct: 413 GMVKLLNKLSDNNQRSYYISYCAELLAQGDARILPLYIKNLQTQLNKPLTKAAQKKTDKT 472

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFS 524
                V  + +      E  LL   I++P   QE + +L D  + +  ++ + +W  L  
Sbjct: 473 FIKPEVSTE-NNLLKEAETILLKIYIHYPECRQEIFNKLEDNNLCFSLSDHRIIWHNLLE 531

Query: 525 DFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
              +      +   Q + +     + L Q+  ++ D   +    +    +       A  
Sbjct: 532 IEEDTLNTTNDNNEQFISKLEIKMVELSQIVNKIYDLLNFREIEQYEDSNRLNLIIDAAL 591

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +  +   L +     E++  ++  + +       ++       +I Q++
Sbjct: 592 ISLKKVNLEKYCLYCEQKYKKINPQEDPVNYQYYLNEYISSRQKILQLQ 640


>gi|53715231|ref|YP_101223.1| DNA primase [Bacteroides fragilis YCH46]
 gi|60683165|ref|YP_213309.1| putative DNA primase [Bacteroides fragilis NCTC 9343]
 gi|52218096|dbj|BAD50689.1| DNA primase [Bacteroides fragilis YCH46]
 gi|60494599|emb|CAH09400.1| putative DNA primase [Bacteroides fragilis NCTC 9343]
          Length = 667

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 156/680 (22%), Positives = 289/680 (42%), Gaps = 70/680 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I  ++  +V   +R  N     Y   CPFH+EKTPSF  + SKG  
Sbjct: 2   IDQATIDRILDAAQIVEVVSDFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPSKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CFSC   G+ + F+      S+ E+++ LA    + +   +   E+KE    +  +  +
Sbjct: 57  KCFSCGKGGNAVHFIMEHEQMSYPEALRYLAKKYNIEIKERELTNEEKEVQSNRESMFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y  +RG     I+ F+LG++ + R +L +   +KGF
Sbjct: 117 NNFARDYFQNILKNHIDGRSIGLAYFRQRGFRDDIIDKFQLGFSTEGRDALAQEALRKGF 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
            +E +++ GL  +  +     DRF  R++FP+ +  G+V+AFGGR LS       KY+NS
Sbjct: 177 KQEFLVKTGLCYET-DDHKLRDRFWGRVMFPVHTLSGKVVAFGGRVLSTENKKLAKYVNS 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+GV+NVV+
Sbjct: 236 PESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVVA 285

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S GT+LT  Q+RL+ + +  I + +DGD  G++A+ + ID+    L  G  +   LL  G
Sbjct: 286 SSGTSLTPGQIRLIHRFTNNITVLYDGDMAGIKASIRGIDM---LLEEGMNIKVCLLPDG 342

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPDSF R +  T F+  I E          +     +   P +RAEL   +   I  I 
Sbjct: 343 DDPDSFARKHNATEFQNFIQEHETDFIRFKAQLLMEDAGKDPMKRAELINDIVRSIAVIP 402

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS------ 470
           +  +R  Y +     L+   +  ++E +       +          +             
Sbjct: 403 EAIVRDVYIKECGQLLRIEDKLLVSEVAKRRELQAEKGNKPIASNNAPTPQPGEMPPPFP 462

Query: 471 -------------LVKGKLSKKPSLREAALLLTLINHPA-----------------ILQE 500
                          +GK  ++    E  ++  ++ +                   +++ 
Sbjct: 463 PEEMEADTYQSFIPQEGKEGQEFYKYERLIIQMIVRYGEKVMCNLTDEEGNEVPVTVVEY 522

Query: 501 QYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
              +L   ++ + N   +++ S       +Q++           +     +  +L     
Sbjct: 523 VINDLKEDELAFHNPLHRRILSEASEHIHDQEFASERFFVAH-PDPKISTIATELASDRY 581

Query: 559 DAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
               + + T+  + D  + Y+    L +  +  +++ + + I   +   +   +  +   
Sbjct: 582 QLSKYHSKTQKLVTDEERLYEMVPMLMINFKNAIVAEELKHIMYALQDPSIANDNAQCDA 641

Query: 617 LISILHEVHIQIHQIESQEA 636
           ++    E+     +I++  A
Sbjct: 642 VMQRYKEMK----EIQNLMA 657


>gi|168494505|ref|ZP_02718648.1| DNA primase [Streptococcus pneumoniae CDC3059-06]
 gi|221231816|ref|YP_002510968.1| DNA primase [Streptococcus pneumoniae ATCC 700669]
 gi|183575620|gb|EDT96148.1| DNA primase [Streptococcus pneumoniae CDC3059-06]
 gi|220674276|emb|CAR68817.1| DNA primase [Streptococcus pneumoniae ATCC 700669]
          Length = 586

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 148/629 (23%), Positives = 260/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G  FIE+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVPFIEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG+++ V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRAGIESAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFLEKIAPLIVQEKSIAA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMEGISRPTPIT----MPITKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|332974450|gb|EGK11374.1| DNA primase [Kingella kingae ATCC 23330]
          Length = 587

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 178/618 (28%), Positives = 276/618 (44%), Gaps = 54/618 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P +FI DLL    I ++I QYV   +   N     Y ACCPFH EK+PSF  + +K FY
Sbjct: 2   IPHEFIDDLLARTDIVDIIDQYVPLKKGGAN-----YMACCPFHKEKSPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK-------EKIQT 115
           +CF C   G  + F+    G SF+E+VQ LA   G+ +P V  +  +        ++ Q 
Sbjct: 57  HCFGCGAHGSAIGFVMEHQGLSFVEAVQMLADRVGMTVPNVRSETSESTAQRAARKQQQQ 116

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L  +++ A +F+   L   ++++   Y+ +RG+     E + +GYAPD    L +  + 
Sbjct: 117 TLENIVQAACEFYRQQL--PQNQQAIDYVKKRGLSREIAEHYGIGYAPDGWQPLAQIFQ- 173

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
                         +  DN    YDRFR+RL+FPIR+  GQVI FGGR L      KYLN
Sbjct: 174 ---PYPSAPLVDSGMVLDNEGKHYDRFRHRLMFPIRNVSGQVIGFGGRVL-DDSKPKYLN 229

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP+T LF KGKNLY  + A   ++   R          I++VEGYMDV++L Q GV   V
Sbjct: 230 SPDTPLFDKGKNLYGLYEARQAIKDVGR----------ILVVEGYMDVVALAQFGVGYAV 279

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T   +++L++ +  +  CFDGD  G +AA++A++  L  L     +NF+ L  
Sbjct: 280 AALGTATTADHIKMLFRQTDSVYFCFDGDAAGRKAAWRALENALPQLKDDKSLNFLFLPE 339

Query: 356 GEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
             DPDSF+R +GK  FE+ L+ ES PL    W   T N   +T + +AEL  H    +N 
Sbjct: 340 EHDPDSFVREFGKARFEEALLHESKPLSAYFWDALTANLDMHTQEGKAELVNHATPLLNQ 399

Query: 415 I-KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           I +   L Y   Q +  +                      A+       S R   +  + 
Sbjct: 400 ITQASALAYLLKQELSAKTGIDPSNLAYLMGQAAPRRHVEAKSYKLPRESSRPTAAISLI 459

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K  +   L E       +  P                ++E   L   L   + E     
Sbjct: 460 QKQIRTLLLNEKW--AQYVAFPDYFAL-----------DSEYACLV-ALAKFYREHPNAT 505

Query: 534 PEEIHQRLCERGFGELLKQL-DRQVRDAGLWSATTEANIVDVRQGYQQA--------LAL 584
                +   +    E+L  +    ++D    S  + A   + + G  +         +  
Sbjct: 506 MSRALEYFRDSAHDEILTFICRHTMQDEQEISDNSPAKCQEFQDGMTRLTLDLKTAQINR 565

Query: 585 YKRFRLLSRQKEEIEKQI 602
            ++   LS  ++ +  Q+
Sbjct: 566 LRQKENLSADEKRLLVQL 583


>gi|148998338|ref|ZP_01825780.1| DNA primase [Streptococcus pneumoniae SP11-BS70]
 gi|168576203|ref|ZP_02722097.1| DNA primase [Streptococcus pneumoniae MLV-016]
 gi|307067746|ref|YP_003876712.1| DNA primase [Streptococcus pneumoniae AP200]
 gi|147755735|gb|EDK62780.1| DNA primase [Streptococcus pneumoniae SP11-BS70]
 gi|183577908|gb|EDT98436.1| DNA primase [Streptococcus pneumoniae MLV-016]
 gi|306409283|gb|ADM84710.1| DNA primase (bacterial type) [Streptococcus pneumoniae AP200]
 gi|332200549|gb|EGJ14621.1| DNA primase [Streptococcus pneumoniae GA41317]
          Length = 586

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 148/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G +F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKRSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMEGISRPTPIT----MPITKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|111657921|ref|ZP_01408631.1| hypothetical protein SpneT_02000897 [Streptococcus pneumoniae
           TIGR4]
          Length = 591

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 149/629 (23%), Positives = 260/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 8   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G  FIE+VQ L    G+ +       +K       L  + E 
Sbjct: 63  CFGCGRSGDVFKFIEEYQGVPFIEAVQILGQRVGIEVEKPLYSEQKSASPHQALYDMHED 122

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 123 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 181

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 182 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 241 IFNKSYELYHMDRAKRSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 291 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 346 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFLEKIAPLIVQEKSIAA 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 406 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMEGISRPTPIT----MPVTKQLSAI 461

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 462 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 507

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 508 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 562

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 563 KVQEASHVGDTDTALEELERLISQKRRME 591


>gi|110597026|ref|ZP_01385315.1| DNA primase [Chlorobium ferrooxidans DSM 13031]
 gi|110341217|gb|EAT59682.1| DNA primase [Chlorobium ferrooxidans DSM 13031]
          Length = 631

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 174/652 (26%), Positives = 285/652 (43%), Gaps = 43/652 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   I D+     I ++I  Y+       N     Y A  PF  EKTPSF  +  K  Y
Sbjct: 2   IPHTAIDDVRQAADIVDIISDYLTLQPSGRN-----YKALSPFTREKTPSFVVSPEKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CFS    G+  SF+  +   SF E+V+ +A  AGV +     K E+++  +      + 
Sbjct: 57  KCFSTGKGGNVFSFIMEMEKVSFPEAVELVAKRAGVDISRFTEKKEREKPGEESRTETLR 116

Query: 123 VATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A  FFH +L+ +  K    Y   ERG+    I  F LGYAP+S   L    ++    +E
Sbjct: 117 WAAKFFHQTLQGSEGKTASVYLGTERGLSEKTIRSFGLGYAPESWEHLFNAAKRSAIPQE 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETI 240
            +++ GL+       + YD FRNR+IFP+ S  GQV+ FGGRTL       KYLNSPE+ 
Sbjct: 177 HLVDLGLITHNKQRNSWYDTFRNRVIFPVFSVGGQVVGFGGRTLGNDPHAPKYLNSPESA 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K K LY    A N +++              ILVEGYMDVL+L QAG+ N V+S GT
Sbjct: 237 LFEKSKLLYGLHAAKNEIRRM----------ESAILVEGYMDVLALHQAGITNAVASCGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT YQ ++L + + R++  +D D  GL++    I+     L  G     V+L  G+DPD
Sbjct: 287 SLTRYQAKILQRYTRRVLFIYDADPAGLKSMITGIE---TLLAEGITPFVVMLPSGDDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLV-DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           SFIR  G+  F +          +   +  +E+  F  P+E++     + + I  I D+ 
Sbjct: 344 SFIRREGREKFLQFTEAEKLQFLEFQIRFFSESGDFEQPEEKSRSIRSMVHTIALIPDRI 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y Q + ++L       +           K +  ++++           V  +++K+
Sbjct: 404 QQELYLQELAEKLSISHSALLELLGKQLEAEGKKSVSQERRTEVT-------VPKRVNKE 456

Query: 480 PSLREAALLLTLINH----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-----QK 530
            S+ E   L  L+       A+L+        +   +   Q++++ +   + E     ++
Sbjct: 457 LSVLEKTFLKALLESTGYGNAVLEFAASHEEMLELSHPAAQQIFTHMIRRYHEIEGNPEE 516

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--F 588
                    +       +L   L      +  W   ++ +    ++     L  +K    
Sbjct: 517 RIDIASEISQFSTPESRDLASGLMMDQPVSNKWHELSDVHAESAKRCLAMFLDAFKNLIL 576

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ-IESQEAMIE 639
             L RQK  I ++I     +   EK   L+     +  +I +  +  + MIE
Sbjct: 577 EPLIRQKTAITEKIR---IENNTEKEKELLMEKVAMDNKIGKTTKELKTMIE 625


>gi|238024933|ref|YP_002909165.1| DNA primase [Burkholderia glumae BGR1]
 gi|237879598|gb|ACR31930.1| DNA primase [Burkholderia glumae BGR1]
          Length = 628

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 174/660 (26%), Positives = 285/660 (43%), Gaps = 69/660 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------------DP 105
           +CF C   G  + FL    G +F E+V++LA   G+ +P                    P
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVEQLAQSVGLSVPREPSPMRGGGGYGGHGGEGAP 116

Query: 106 KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
                + + T L  +++ A D++   L+         YL +RG+       F LGYAPD 
Sbjct: 117 LPAVSKSLTTALTDVMQTACDYYRKQLRG--APNAIQYLKKRGLTGEIALRFGLGYAPDG 174

Query: 166 RYS---LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222
             +     E  R++   E  ++      D   +A  YDRFR R++FPIR+ +G VI FGG
Sbjct: 175 WQNLEEAFEDYRREELVEAGLVIVSEKTDAQGAARRYDRFRERIMFPIRNVKGAVIGFGG 234

Query: 223 RTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD 282
           R L  GE  KYLNSPET LF+KG  LY  F A   ++             + ++VEGYMD
Sbjct: 235 RVLDSGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMD 283

Query: 283 VLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342
           V++L Q G  N V++LGTA T   ++ L + +  +V  FDGD  G RAA +A++  L H 
Sbjct: 284 VVALAQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDSAGRRAARRALEACLPHA 343

Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
                + F+ L    DPDS++R +G  AF + +  ++PL   L      ++  + P+ RA
Sbjct: 344 ADNRTIRFLFLPAEHDPDSYVREFGADAFSEQVRRAMPLSQFLLNEAIRDKELDQPEGRA 403

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
           +     K  +  +    LR        DRL   F++  +      R      +       
Sbjct: 404 KALFDAKPLLQALPANALRAQIMHMFADRLDIPFEEVASLSEVDARIPAPLRQ------- 456

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
                          ++ + +E   L  LI HP I      +            +L+  +
Sbjct: 457 --------APARNDRRRVTDQEKRALRNLIMHPRIAMLLDDDEIATLRGLPRNGELFDEV 508

Query: 523 FSDFVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDV 574
                          LP+ +        + E+++++   D  VRD     A        V
Sbjct: 509 LGHARALGDAAEFRLLPDVLRSSANAETYDEIIREILDYDENVRDLMSDPAEDGEAQETV 568

Query: 575 RQGYQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           R+  +      +A  L  R+   + +  E+  ++++ + +  AE    L     E+  ++
Sbjct: 569 RERERIAGEELKAAVLKMRYDACNDRCNEL-ARLSKPSPEELAELVV-LNRARTEMKARL 626


>gi|300703498|ref|YP_003745100.1| DNA primase [Ralstonia solanacearum CFBP2957]
 gi|299071161|emb|CBJ42475.1| DNA primase [Ralstonia solanacearum CFBP2957]
          Length = 603

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 178/643 (27%), Positives = 284/643 (44%), Gaps = 59/643 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-----IEKKEKIQTDL 117
           +CF C   G  + FL    G S++E+++ LA  AG+ +P            +++     L
Sbjct: 57  HCFGCGAHGSAIGFLMEFSGLSYVEAIRDLAQSAGMVVPEERGGLPPGARAERQAKTVAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             ++  A D +   L++        YL  RG+       F LGYAPD   SL        
Sbjct: 117 GDVMARAGDHYRKQLRS--AANAIQYLKGRGLTGEIAGHFGLGYAPDDWQSLEAVFGAYR 174

Query: 178 FSEEKI--IEAGLLIDGDN-----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
                +  IEAGL+I+ +          YDRFR+R++FPIR+++G VI FGGR L +GE 
Sbjct: 175 DDAIAVPLIEAGLVIESEKTDADGRHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF KG  LY  F A N ++             ++++VEGYMDV++L Q G
Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFGYVLVVEGYMDVVALAQLG 283

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
             N V++LGTA T   ++ L +    ++  FDGD  G RAA +A++  L H+     V F
Sbjct: 284 FANAVATLGTACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKIVKF 343

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           + L    DPD+FIR  G  AF   +  ++PL   L +  +E+     P+ RA  +   K 
Sbjct: 344 LFLPPEHDPDTFIREEGTEAFAAEVRNAMPLSRFLLQAVSEDLDLRQPEGRARAQYEAKP 403

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +    LR    + + +         I    G      +  R   ++    R   ++
Sbjct: 404 LLSAMPPGGLRLQIVRGLAEMTG-TTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTA 462

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFV 527
           L            E  +L  L+ +PA+           +    EL   + L   L     
Sbjct: 463 L------------EQKVLRLLMRYPALAAR-LDADTRAQLTAPELPQGEVLSGLLTECDA 509

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                      +RL +  + E    L   V D  +     E    +     Q+ LA    
Sbjct: 510 VGPEVHFGAFVERLGQTPYAEAFAGLRVAVLDDDIEL---EPATQEFDVAVQKMLA---- 562

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629
              L R+ + +++++ +     +A+K    +  L  E+  +  
Sbjct: 563 -EPLRRELDMLQRKM-EGGHASDADK--ERLRWLVGEISRRRR 601


>gi|56461301|ref|YP_156582.1| DNA primase [Idiomarina loihiensis L2TR]
 gi|56180311|gb|AAV83033.1| DNA primase [Idiomarina loihiensis L2TR]
          Length = 581

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 166/626 (26%), Positives = 281/626 (44%), Gaps = 60/626 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I  ++   V   +   N       ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPKSFIHDLLERADIVEIVDSRVPLKKAGRNHQ-----ACCPFHNEKTPSFTVSQDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI---- 118
           +CF C   G+ + FL    G +F ++V+ LA I GV +P   P+  +  + +   +    
Sbjct: 60  HCFGCGEHGNAIDFLMEFDGLNFPDAVEELAGIMGVEVPREQPENPQLAQKKQQQMQDDS 119

Query: 119 RLIEVATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L+     FF H LK+  +   +  YL  RG+    ++ F++GYAPD+   L        
Sbjct: 120 ELMSKTARFFQHQLKHHENSNRVIDYLKGRGLSGETVKRFQIGYAPDAWDGLLSTFGSSA 179

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
              ++++E  L I+ +     YD FR+R++FPI   RG+V+ FGGR +      KYLNSP
Sbjct: 180 PQRQQLLELKL-INRNEKGRHYDFFRDRVMFPIHDRRGRVVGFGGRIIDGD-GPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LFHKG  LY ++     ++K             + +VEGYMDV++L +AG+   V+S
Sbjct: 238 ETRLFHKGSELYGYWHMQQAVRKP----------EQVCIVEGYMDVVALSEAGIHYAVAS 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA T  QL+ L++ S RIV C+DGD  G  AA++A++  L  L  G  + F+ L  GE
Sbjct: 288 LGTATTSEQLQRLFRTSGRIVCCYDGDRAGRDAAWRALENALPLLRDGLDMAFLFLPEGE 347

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS +R +G  AFE+ + ++ P  +  ++    +   ++   R++L    K  I  +  
Sbjct: 348 DPDSVVREHGAEAFERELKKATPFTEYFFEHLQADIDVSSDAGRSQLLNIAKPLIEKVAS 407

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  R    Q + ++L++   +   +     R  +     +                    
Sbjct: 408 EYYRDTLMQRLAEKLRRETSQLERQFEKPQRQSRPKESVKMTPL---------------- 451

Query: 478 KKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                     +  L+ +P + Q     +EL +++    +   L   L     E +     
Sbjct: 452 -------RKAIALLLQYPQLAQSVPVREELRELQVSGID---LLIALHKQCAE-RQMTTA 500

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ +   +  + + L++L              + +  +V Q +              R  
Sbjct: 501 QVLEGWRDTEYYQPLQKLALW---------QHQLDEDNVEQEFNDIFIYLIDQYFEQRAN 551

Query: 596 EEIEKQIAQVTAKGEAEKTAILISIL 621
             ++K+      + E ++   LI  L
Sbjct: 552 ALLKKEQEGALTRVERQEYQTLIQYL 577


>gi|329906287|ref|ZP_08274383.1| DNA primase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547307|gb|EGF32146.1| DNA primase [Oxalobacteraceae bacterium IMCC9480]
          Length = 598

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 174/642 (27%), Positives = 289/642 (45%), Gaps = 68/642 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI+DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPQSFIQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTDLI- 118
           +CF C   G  + FL    G  F+++V+ LA   G+ +P  D   P  ++ E     L  
Sbjct: 57  HCFGCGAHGTAIGFLIEYSGMGFVDAVKDLAQNVGMMVPESDDKMPPAQRAEYQAKSLAL 116

Query: 119 -RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              +  A D +   L+    +R   YL  RG+       F +GYAP+   SLR       
Sbjct: 117 SEAMTQACDHYRLQLRT--AERAKGYLIGRGLTGEIAARFGIGYAPEGWDSLRSVF--PD 172

Query: 178 FSEEKIIEAGLLIDGDN----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
           +    ++EAGL+ID  +    +   YDRFR+R++FPIR+++GQVI FGGR L  GE  KY
Sbjct: 173 YELTALVEAGLVIDRTDEEGGNRKRYDRFRDRIMFPIRNTKGQVIGFGGRILDSGEP-KY 231

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET LF KG  LY  F A   ++           + ++++ EGYMDV++L Q G   
Sbjct: 232 LNSPETPLFQKGSELYGLFEARQAIR----------DAGYVLVTEGYMDVVALAQLGFPQ 281

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           VV++LGTA T   ++ L + +  ++  FDGD  G RAA +A++  L +      + F+ L
Sbjct: 282 VVATLGTACTAVHVQKLSRQTDHVIFSFDGDGAGRRAARRALEASLPYAADNKTIKFLFL 341

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPDS++R +G   FE+ + +++PL   L K  T++    T + RA+++   K  + 
Sbjct: 342 PSEHDPDSYVREHGTAGFEQQVRDAMPLSQFLLKVVTDDNDLTTSEGRAKVQFDAKPLLQ 401

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +    LR    + +      L +   TE           AR R      +R     L  
Sbjct: 402 AMPASSLRLQIVRELAQ----LTRTTPTEIETLFELASPAARVRAAPPRGKRTAPVGL-- 455

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKY 531
                     E  ++  L+ HP +  E  Q+   A + +  +    L   + +       
Sbjct: 456 ----------ELQVMRLLVAHPVLASELDQDALDAMLHFVPDSAVMLMQLVVAGQEMGAQ 505

Query: 532 FLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                + + L      F  ++ ++           A  E++    R     A+       
Sbjct: 506 ASFAMLSEHLRAGGPEFDGMIAEVA----------AEPESDRDAARLELAGAVR------ 549

Query: 590 LLSRQKEEIEKQIAQVTAKGE-AEKTAILISILHEVHIQIHQ 630
               + + ++ ++ Q+ A G   ++       L     Q+ +
Sbjct: 550 --QTKMKVLKAELDQLAAGGMGHDEARTRYRELTLKQEQLRR 589


>gi|289167834|ref|YP_003446103.1| DNA primase [Streptococcus mitis B6]
 gi|288907401|emb|CBJ22238.1| DNA primase [Streptococcus mitis B6]
          Length = 586

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 148/629 (23%), Positives = 262/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G  F+E+VQ L    G+ +       +K+      L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVPFMEAVQILGQRVGIEVEKPLYSEQKQISPHQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F++G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFRIGLAPPERNYLFQRLSGQYRE-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
            +++GL     ++    D F NR++FP+ + +G+V+AF GR   K +S   KY NS  T 
Sbjct: 177 FLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVLAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSITA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P     Q ++   K     
Sbjct: 401 QNSYIHILADSLASFDYVQIEQIVNESRQAQRQNRMEGISRP----TQITMPVTKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEMSPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASRVGDTDTALEELERLISQKRRME 586


>gi|15900941|ref|NP_345545.1| DNA primase [Streptococcus pneumoniae TIGR4]
 gi|14972547|gb|AAK75185.1| DNA primase [Streptococcus pneumoniae TIGR4]
          Length = 586

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 149/629 (23%), Positives = 260/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G  FIE+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVPFIEAVQILGQRVGIEVEKPLYSEQKSASPHQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKRSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFLEKIAPLIVQEKSIAA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMEGISRPTPIT----MPVTKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|323464343|gb|ADX76496.1| DNA primase [Staphylococcus pseudintermedius ED99]
          Length = 595

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 152/637 (23%), Positives = 258/637 (40%), Gaps = 44/637 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P++ I+++     I +++ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIPQNTIEEIKQQSDILDIVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIR 119
             +CF C   G+   F+  +   SF E+VQ L     + +                 +I+
Sbjct: 56  ICHCFGCKKGGNVFQFIQEIENISFTEAVQHLGERVNIKVDIEETNDDMHIASDDLKMIQ 115

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + E    ++H+ LK     ++   YL ERG     I+  K+G+APDS +   + + +KG+
Sbjct: 116 MHEEILSYYHYLLKKTVEGEQALNYLYERGFTDDMIDARKIGFAPDSSHFATDFMEKKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             +   EAG+L   D     YDRFRNR+IFP+ +++G+++ + GRT    +  KYLNSPE
Sbjct: 176 DLQLGYEAGILSRNDTDFNYYDRFRNRIIFPLANAQGRIVGYSGRT-YTEQEPKYLNSPE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + +F K K LYN   A   +++             +IL+EG+MDV+    AG++NVV+S+
Sbjct: 235 SPIFQKRKLLYNLSEARKSIRQK----------DEVILLEGFMDVIKADDAGLKNVVASM 284

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT L+   +  L KL   + L FDGD  G+ A  K        L     V  V L    D
Sbjct: 285 GTQLSNEHITFLKKLCSHVTLMFDGDFAGIEATMKTGQ---QLLQQQFNVYVVQLPSKMD 341

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I  YG   F   +            ++ ++   N      +           I   
Sbjct: 342 PDEYIMKYGAEKFNSFVNTEKKAFVSFKLQQHQHEIQNNDLAYEKYYHMFVEDAALISSH 401

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            LR    Q   +  +        E                    +Q +            
Sbjct: 402 ILRNKVVQNASELFKVSADSLNKEVESVHPQQHFEQAGPIPIQTTQWM---------QHN 452

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           K    E A+L   I    +    YQ++ +  + N   ++++  L   + +   F   E  
Sbjct: 453 KYEKAERAILKHFIMDKEVFLSFYQDIDETDFTNEYFKRIFITLREFYSKFDSFTMSEFV 512

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             +      E+L  L                   +    Y Q +  ++         E +
Sbjct: 513 TYIDHDILKEVLIYLWDY--------PLNREPYENEIADYIQVMTEHRYSES----IESL 560

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +++ + T  G+   +      +  V+    +++SQE
Sbjct: 561 HEKLREATRVGDIA-SQKYFLEMI-VNKNRARLKSQE 595


>gi|160881642|ref|YP_001560610.1| DNA primase [Clostridium phytofermentans ISDg]
 gi|160430308|gb|ABX43871.1| DNA primase [Clostridium phytofermentans ISDg]
          Length = 596

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 148/607 (24%), Positives = 269/607 (44%), Gaps = 28/607 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP + ++++     I ++IG YV   +R  N     +   CPFH+EK+PSF  + SK 
Sbjct: 1   MYYPEELVEEVRERNDIVDVIGSYVKLQKRGAN-----HMGLCPFHNEKSPSFSVSGSKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            Y+CF C V G+  +FL      +F+E+++ L   AGV LP      + +K   ++T ++
Sbjct: 56  MYHCFGCGVGGNVFTFLMEYENYTFVEALKVLGDRAGVKLPELEYSEEAKKAADLKTRVL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            L + A  ++++ L++ + +    YL  RG+    I  F LGY+      L +++++ G+
Sbjct: 116 ELYKEAGKYYYYQLRSKQGEEALAYLRNRGLSEEIITKFGLGYSTKYSDDLYQYMKKAGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            +  + ++GL      S  +YD+F NR++FPI     +VIAFGGR +      KYLNSPE
Sbjct: 176 EDSLLRQSGLFTME-ESKGAYDKFWNRVMFPIMDGNNKVIAFGGRVM-GDGVPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TI+F K +NL+    A              +   + ++ EGYMDV++L QAG QN V+SL
Sbjct: 234 TIVFDKSRNLFGLNFAR------------TSRKDYFLICEGYMDVIALHQAGFQNAVASL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T  Q RLL + +    L +D D  G+ AA +AI +       G     + +   +D
Sbjct: 282 GTAFTPQQARLLSRYTKEAYLTYDSDGAGVAAAIRAIPI---LKEAGLSAKVIDMKPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G   ++  I +++            +     P+++ +    +   +    ++
Sbjct: 339 PDEFIKALGAEEYQNRIDQAMNSFFFEISVLERDYDLGDPEQKTKFFNEMAKKLLIFTEE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+  +    +       +   RY  +       K    R  + +  KGK  +
Sbjct: 399 IERNNYIEALSRKYNVSYDNLRKLVN---RYGAQMTVVNVAKETRDREKEQNAKKGKPEE 455

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LL  LI+      +    +    +     +++ + +F  +  +    P +I 
Sbjct: 456 GMQKSQKILLTWLIDDSKAFDQIRGIITADDFTEELYREVANMVFEQYESEHKVTPAKII 515

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSRQKEE 597
            R   +     +  L        +  A       D     ++A L +  +  +       
Sbjct: 516 NRFESKELQTEVAGLFSTSIQLEMTEAERRKLFADTVVRVKRASLDIAYKKAIEDNDIMA 575

Query: 598 IEKQIAQ 604
           ++  + +
Sbjct: 576 LQNVMKE 582


>gi|306818280|ref|ZP_07452009.1| DNA primase [Mobiluncus mulieris ATCC 35239]
 gi|304648925|gb|EFM46221.1| DNA primase [Mobiluncus mulieris ATCC 35239]
          Length = 688

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 151/705 (21%), Positives = 254/705 (36%), Gaps = 99/705 (14%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I+ +   IPI  ++G YV   R   N         CPFHDEKTPSFH       
Sbjct: 4   KIDPDDIQKVREAIPIEQIVGDYVTLQRGGVN----SMKGLCPFHDEKTPSFHVTLGANL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           ++CF C   GD + F+  + G +F+E+++ LA  AG+ L  V+       +     +  L
Sbjct: 60  WHCFGCGEGGDLIDFVQRIEGLAFLETIEFLANKAGIVLHYVEGGEAGSTRVEPGTRQRL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +    VA DFF   L +   +    +++ R   S     F +GYAP    +L  HLR  G
Sbjct: 120 LECNRVAQDFFTAQLLSPEAQDARDFVEGRAFTSEDAARFGMGYAPKGWGNLLGHLRDSG 179

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLN 235
           F++ +I   GL      S   YD FR+R+ +PIR + G V+ FG R L   +    KY+N
Sbjct: 180 FTDAEITTVGLAK--MGSRGLYDVFRDRVTWPIRDTTGAVLGFGARRLDDSDPENPKYIN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +PE+ ++HK   LY    A   + +  R           ++VEGY DV++   +GV   V
Sbjct: 238 TPESPIYHKSSVLYGLDLARKTIGEQRR----------CVIVEGYTDVMAAHLSGVTCAV 287

Query: 296 SSLGTALTEYQLRLLW--------------------KLSPRIVLCFDGDDPGLRAAYKAI 335
           ++ GTA T    R++                          ++  FDGD  G +AA KA 
Sbjct: 288 ATCGTAFTGEHARIVRRLIGRPADGASSLRMPDGSAPRGGEVIFTFDGDAAGQKAALKAF 347

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
                      +    +   G DP       G  A   L+    PL + + K        
Sbjct: 348 RTDQDFAA---QSFVAVAGEGLDPCDLRMRRGPGAVRDLVDSRRPLFEFVLKTIIGGFDL 404

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  + R             I+D+ LR  Y   +   L    ++     +  G++ +  ++
Sbjct: 405 DNSEGRVAALRAAAPIAAEIRDRALRQEYVSRLAGWLGVNSREAWETVNAAGQWLRSRSQ 464

Query: 456 HRDQKGPSQR-----------------------------------LMQSSLVKGKLSKKP 480
                G S+R                                   +    L  G  +   
Sbjct: 465 EARGAGLSRRSGGSNGYGGGSVGGGFMSREGNPGGTGNAPALLPVMPPVRLDPGVDTDPV 524

Query: 481 SLREAALLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLF-------------SDF 526
              E   L+  ++ PA+  E  +  L+   +    L+ ++  +                 
Sbjct: 525 WRLERDALVAALHFPALTGETHFDLLSPQGFTQPTLRAIFEVILAAGGVAEYARLQTEAA 584

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                  P     R       +    L   V D         +   D    +   +    
Sbjct: 585 ASGTSDPPRAALNRWAAAVKSQAGSALGGVVTDLATRPVPVRS--EDEAAPWIHEVMDAL 642

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
               L+R+   +  ++ ++ A    E+   + + L E+  Q+  +
Sbjct: 643 ERLYLNREMAGLRAKLNRLDAG---EEKNAVFAQLMELETQVRAL 684


>gi|149006255|ref|ZP_01829967.1| DNA primase [Streptococcus pneumoniae SP18-BS74]
 gi|307127397|ref|YP_003879428.1| DNA primase [Streptococcus pneumoniae 670-6B]
 gi|147762032|gb|EDK68994.1| DNA primase [Streptococcus pneumoniae SP18-BS74]
 gi|306484459|gb|ADM91328.1| DNA primase [Streptococcus pneumoniae 670-6B]
 gi|332075027|gb|EGI85498.1| DNA primase [Streptococcus pneumoniae GA17545]
          Length = 586

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 147/629 (23%), Positives = 260/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G +F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  + G++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRVGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVKEKSIAA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|260886855|ref|ZP_05898118.1| DNA primase [Selenomonas sputigena ATCC 35185]
 gi|260863454|gb|EEX77954.1| DNA primase [Selenomonas sputigena ATCC 35185]
          Length = 594

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 165/630 (26%), Positives = 275/630 (43%), Gaps = 45/630 (7%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
             F++ +     I  ++  YV   ++        YW CCPFH E TPSF     +GF+YC
Sbjct: 7   DAFVERVRADSDIVAVVSSYVALKKKGN-----RYWGCCPFHHENTPSFSVVPEQGFFYC 61

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRLIE 122
           F CHV G+   FLS +    + E+++  A    +PLP  +    +  ++K   +L R+ E
Sbjct: 62  FGCHVGGNVFKFLSLIENIPYFEAIKLQAEKLNIPLPERERSAAEIARDKKAEELRRVHE 121

Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           +A  FFH+ L K    +    YL  RGI    IE F +GYAP +   L     ++G    
Sbjct: 122 MAQTFFHNCLTKTHYGEAAKAYLAGRGIGESVIEAFGIGYAPPAWDKLAVAFEKRGVPAA 181

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            + E+GL       A  YDRFRNR+I PIR +RG+V+AFGGR L      KYLNSPET++
Sbjct: 182 LLEESGLAAKRQKGAGHYDRFRNRVIIPIRDARGRVVAFGGRIL-GDGEPKYLNSPETLI 240

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+K + L+    A   + +          + F ++VEGYMD +S+  AG++NVV+SLGTA
Sbjct: 241 FNKRRLLFGLDRAHRAIAR----------AGFAVVVEGYMDAISVAAAGIENVVASLGTA 290

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
               Q +LL + +P +  C+D D  G  A  +A+ +       G  V  + +  G+DPD 
Sbjct: 291 FAAEQAKLLLRYAPEVRFCYDSDAAGQEATLRALSVAR---AAGATVKVLRVPDGKDPDE 347

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           +IR +G+ AF KL+  +LP ++    R  E     +   R +    L   +  +K     
Sbjct: 348 YIRKHGEAAFRKLVEAALPFIEYRMVRVLETADKESLQGRLDTLAALLPVLAEVKSPAEL 407

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y       L         E           A  R+    + +     L +        
Sbjct: 408 DGYIVRTARELTLDEGLIRAELGRAAGSSAPPAAVRETTRRAFKKADDILQRAG------ 461

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                +L T  + PA+ +     +    +   E  K  ++L+   +  +          L
Sbjct: 462 ---RIVLRTAWHDPAVTEHIASLVPFEAFSTEEQAKALAWLYGLHLAGERPTDARAQAEL 518

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            E    E+ + L              +   +D  + Y  ++   +R   L++  EE  ++
Sbjct: 519 SEAVATEISRSLA------------EDTGTMDALEAYDDSMRRLRRAY-LAQLFEEHTRR 565

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             +   + +A +    ++ +  +  ++  +
Sbjct: 566 ADRWEKENDA-RFLQELAQIQRIKNEMEGL 594


>gi|254000082|ref|YP_003052145.1| DNA primase [Methylovorus sp. SIP3-4]
 gi|253986761|gb|ACT51618.1| DNA primase [Methylovorus sp. SIP3-4]
          Length = 584

 Score =  344 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 162/624 (25%), Positives = 279/624 (44%), Gaps = 48/624 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI++LL  + I ++I + V   +   N     Y ACCPFH+EK+PSF  + +K FY
Sbjct: 2   IPESFIQELLNRVDIVDVIDRSVPLKKAGAN-----YSACCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LIR 119
           +CF C   G  + F+    G SF+E++  LA   G+ +P    + +     +     ++ 
Sbjct: 57  HCFGCGAHGSAIGFVMEYQGLSFVEAINELAKQVGMIVPQETRERDTDAPQKKAVPGMVE 116

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            ++ A  ++   LK +  +R   YL  RG+       F++GYAP    +L+E        
Sbjct: 117 AMQQAVLYYRGELKKS--QRAIEYLKGRGLSGQIAARFQMGYAPSGWQNLQEVFSDYQDD 174

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLNS 236
             K I     +  +     YDRFR+R++FPI   +GQVI FGGR L      +  KYLNS
Sbjct: 175 VLKSIGL---VIENEQGRRYDRFRDRVMFPIHDQKGQVIGFGGRVLGTEGNDDGPKYLNS 231

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET LF KG+ LY  F A   ++ + R          +++VEGYMDV++L Q G++  V+
Sbjct: 232 PETPLFQKGQELYGLFLARRAIRDAGR----------VLVVEGYMDVVALAQYGIEYAVA 281

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +  L + +  IV CFDGD  G +AA++A    L  L  G R++F+ L   
Sbjct: 282 ALGTATTPVHITKLMRQTDEIVFCFDGDAAGRKAAWRAAMNALPALTDGLRLSFLFLPAE 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPDS++R YGK AFE  +  +LPL   L +  +E+    + +++       +  +  I+
Sbjct: 342 HDPDSYVREYGKEAFEAAMQTALPLSQYLIQHLSEDNGLQSQEDKVRFLNEAEPILAQIQ 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
             +L     + + +      ++  +          + ++ R  +                
Sbjct: 402 APRLALLLRKRVAELAGLSDEEMRSMIRLPEVQRPRRSQPRQTRSTLS------------ 449

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  +   +L ++  PA++     +LA + +++ E   L        V      P  
Sbjct: 450 ------LQRRFVLMVLMQPALVSP--DDLAWVLHESEE-DALVKHALEAAVAYPSAKPAG 500

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +  +L  R    L+++L+R++                 R+  +   A  +   LL+R +E
Sbjct: 501 LLLQLQNRVDARLMRELEREI-HLLDEQVDYSLEFEGARKQLRDMYAERQGKTLLARMQE 559

Query: 597 EIEKQIAQVTAKGEAEKTAILISI 620
           +    + +              + 
Sbjct: 560 KKISDMTEQEKALLKAMVGATKNR 583


>gi|22298860|ref|NP_682107.1| DNA primase [Thermosynechococcus elongatus BP-1]
 gi|22295041|dbj|BAC08869.1| DNA primase [Thermosynechococcus elongatus BP-1]
          Length = 694

 Score =  344 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 168/664 (25%), Positives = 280/664 (42%), Gaps = 71/664 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I+ +   + I +++ ++V   +R       +Y  CCPFH+EKTPSF  +  KGF
Sbjct: 5   RLHPDTIEAVRQAVNIVDVVAEHVVLRKRGR-----EYVGCCPFHEEKTPSFTVSPLKGF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ----TDL 117
           YYCF C   G+ + FL  L   SF E V  LA    +P+  +D + ++  + +      L
Sbjct: 60  YYCFGCGAGGNAIKFLMELQKRSFAEVVLDLAQRHQIPVRTLDSEQKQALQARLSLQEQL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGI-DSHAIEMFKLGYAPDSRYSLREH-LRQ 175
             ++ +AT F+ H+L+    +    YL  +       I+ F+LGYAP     L  + + Q
Sbjct: 120 YEILAIATSFYEHALRQPIGQAAQDYLQRQRHLKEETIQQFRLGYAPAGWQVLYTYLVEQ 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           KG+    + +AGL++        YDRFR+RLI PI  ++G+V+ FGGRTL   E  KYLN
Sbjct: 180 KGYPAALVEQAGLIMPQRTGDRYYDRFRDRLIIPIMDTQGRVVGFGGRTL-SNEEPKYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F+KG+ L+    A   +            +   I+VEGY DV++L QAG    V
Sbjct: 239 SPETPIFNKGQLLFGLDKARQAIA----------QTDQAIVVEGYFDVMALHQAGFPQTV 288

Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVL 352
           +SLGTAL++ Q++LL + +   +I+L FD D  G RAA +AI +          R+  + 
Sbjct: 289 ASLGTALSQAQIKLLLRYTESKQIILNFDADKAGQRAADRAIGEAADLVYRGDLRLRILT 348

Query: 353 LSRGEDPDSFIRCY------GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
           L  G+D   F           + A++ L+ ++   +D   +   +       D+  +   
Sbjct: 349 LPAGKDAADFFTVDEATLAARRAAYQTLLDQAPLWLDWQIQTLVQQYDLEQGDQFQQASQ 408

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            L   +  + +  LR +Y     + L +   +         R   +  R   +    QR 
Sbjct: 409 ALSELLAKLPNATLRSHYIHHCAELLGRHDSRLTLHLEEALRQQVRGYRWPGRSQKWQRP 468

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL--ADIRYDNNELQKLWSFLFS 524
              +L +          E  LL   ++         Q L   DI +  +  + LW  + +
Sbjct: 469 ADYNLRQA--------AEEQLLRLYLHRGEYRPLIRQTLQARDIEFSLSHHRWLWRQILA 520

Query: 525 DFVE--QKYFLPEE--------------------------IHQRLCERGFGELLKQLDRQ 556
              E       P++                          +  RL E     L+  L   
Sbjct: 521 VEEEHCGGRPDPDDPYNAEWPLHSPTEAGTQLTDLDLVSHLFDRLDEAEDASLITPLLHL 580

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEAEKTA 615
                      +  I       ++ + + K  R L +  +EI   I ++  A  +  +  
Sbjct: 581 DETTASGLDRPKLVIEAAAAALER-ITIEKECRYLLQSWQEIVALILSESPATEDLRRYL 639

Query: 616 ILIS 619
            LI+
Sbjct: 640 PLIN 643


>gi|91788956|ref|YP_549908.1| DNA primase [Polaromonas sp. JS666]
 gi|91698181|gb|ABE45010.1| DNA primase [Polaromonas sp. JS666]
          Length = 660

 Score =  344 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 176/666 (26%), Positives = 281/666 (42%), Gaps = 99/666 (14%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+ FI++LL    + +++G++V   +   N     +   CPFH EK+PSF  + SK 
Sbjct: 1   MAIPQSFIQELLARADVVDIVGRHVQLKKGGAN-----FMGLCPFHGEKSPSFSVSPSKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD------PKIEKKEKIQ 114
           FY+CF C   G+ +SFL    G SFIE+V+ LA   G+ +P  D       K  +  + Q
Sbjct: 56  FYHCFGCGKNGNVISFLMEHAGMSFIEAVKDLAQQYGLQVPEDDVSPQDRAKAAQMREQQ 115

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  ++E A   +   L+ +  +R   Y   RG+       F LGYAP+   SL     
Sbjct: 116 ATLTSVLEKAAMAYIKHLRGS--ERAIEYFKGRGLSGEIARTFGLGYAPEGWRSLASVF- 172

Query: 175 QKGFSEEKIIEAGLLIDGDN-------SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
              +++  ++E+GL+I G+         A  YDRFR+R++FPIR+ +G+ I FGGR L  
Sbjct: 173 -PDYNDPLLVESGLVITGEAGEENAGGEAKRYDRFRDRVMFPIRNVKGECIGFGGRVL-G 230

Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
            E  KYLNSPET +F KG+ LY  F A   L+             + ++ EGYMDV++L 
Sbjct: 231 DEKPKYLNSPETPVFSKGRELYGLFEARTALR----------EHGYALVTEGYMDVVALA 280

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           Q G  N V++LGTA T   ++ L++ +  +V  FDGD  G RAA KA+D  L        
Sbjct: 281 QLGFANAVATLGTACTADHVQKLFRFTDSVVFSFDGDGAGRRAARKALDAALPFATDVRT 340

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
           V F+ L    DPDS+IR +GK  F   + +++PL   L +   E    +T + RA +  +
Sbjct: 341 VKFLFLPSEHDPDSYIREHGKEGFAAYVSKAVPLSRFLLEAAAEGCDLDTAEGRAHMASN 400

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG------ 461
            +   + + D  L+      I D++    ++ +         +K + ++   K       
Sbjct: 401 ARPLWSLLPDGALKRQLLAEIADQVMIDSRELLQLWQPASAGYKNSYKNNSSKRLPNKDH 460

Query: 462 ----------------------------------PSQRLMQSSLVKGKLSKK-------- 479
                                             P       S  +   S          
Sbjct: 461 RPDLPSDFGKNHDVPDYAGYVPDLREEADYASSEPYFPPPAMSAQRPGRSSGGASRAPRR 520

Query: 480 ------PSLREAALLLTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYF 532
                 P+ RE  +L  L+  P    +   E   +          L+ +L S   E    
Sbjct: 521 IAGRILPASREDRVLRLLLTEPQSWDQLSTEEHHLLLALPAPHGPLFVWLESQLHEHGPQ 580

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               + + L E             +          E +  +VR    Q + L ++     
Sbjct: 581 PWAALREGLREHPHE------KHAIAQIAQIPEGIECDWDEVRSILDQLVRLERQ----- 629

Query: 593 RQKEEI 598
           R+ +E+
Sbjct: 630 REMDEL 635


>gi|312795732|ref|YP_004028654.1| DNA primase [Burkholderia rhizoxinica HKI 454]
 gi|312167507|emb|CBW74510.1| DNA primase (EC 2.7.7.-) [Burkholderia rhizoxinica HKI 454]
          Length = 635

 Score =  344 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 179/660 (27%), Positives = 280/660 (42%), Gaps = 63/660 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FSGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------------------D 104
           +CF C   G  + FL    G +F E+V  LA   G+ +P                    D
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVGELAQSVGLTVPHEPAPGAYGGGSPPGPGSGTD 116

Query: 105 PKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD 164
           P        +  L+ +++VA D++   L+         YL  RG+       F LGYAPD
Sbjct: 117 PPPANAGTARA-LVDVMQVAADYYRKQLRG--APDAIQYLKRRGLTGEIALRFGLGYAPD 173

Query: 165 SRYSLREHLRQKGFSEEKI---IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFG 221
              +L                 +        +  A  YDRFR R++FPIR+ RGQVI FG
Sbjct: 174 GWQNLESAFADYRDDALLEAGLVIVSDKASSNGEARRYDRFRQRIMFPIRNVRGQVIGFG 233

Query: 222 GRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM 281
            R L  G   KYLNSPET LF+KG  LY  F A   ++             F+++VEGYM
Sbjct: 234 ARVLDDGGEPKYLNSPETPLFNKGTELYGLFEARLAIR----------EKGFVLVVEGYM 283

Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
           DV++L Q G  N V++LGTA T   ++ L + +  ++  FDGD  G RAA +A+D  L H
Sbjct: 284 DVVALAQLGFPNAVATLGTACTPVHVQKLMRQTDTVIFSFDGDVAGRRAARRALDACLPH 343

Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER 401
                 + F+ L    DPDS+IR +G  AF   I  ++PL   L      ++  + P+ R
Sbjct: 344 AADNRTIRFLFLPAEHDPDSYIREHGMQAFADQIGRAMPLSQFLLNEVLADKEIDQPEGR 403

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT------EHSGYGRYWKKNAR 455
           A+     K  +  +    LR      + DRL    ++           +   R     A 
Sbjct: 404 AKALYDAKPLLQALPPNALRAQILHMLADRLATPVEEVAQFCEIGSRTAPAVRGAPARAD 463

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE---QYQELADIRYDN 512
            R   G   R +++ ++  ++     +++   L TL    A+  E     ++L D     
Sbjct: 464 RRRVTGHEHRALRNVIMYPRIVAMLDVQDCDTLATLARQGALFAETIAHARQLGDAA--- 520

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            E + L   L +          EEI + +    + E ++ L     D    SA       
Sbjct: 521 -EYRLLKDLLLN---SPNAPTYEEIFREIL--VYDENVRDLLHASPDDD--SAQRRDEQE 572

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQI 631
            +     +A+    R+     + E + +Q      +GE   + A L     E+  +   +
Sbjct: 573 RIAADEVRAVVAKMRYDACCERLEILSRQ---PKLEGEQAREFAELSQRRAELKRRAMAL 629


>gi|148989115|ref|ZP_01820505.1| DNA primase [Streptococcus pneumoniae SP6-BS73]
 gi|148994180|ref|ZP_01823495.1| DNA primase [Streptococcus pneumoniae SP9-BS68]
 gi|168488914|ref|ZP_02713113.1| DNA primase [Streptococcus pneumoniae SP195]
 gi|169834027|ref|YP_001694497.1| DNA primase [Streptococcus pneumoniae Hungary19A-6]
 gi|147925338|gb|EDK76416.1| DNA primase [Streptococcus pneumoniae SP6-BS73]
 gi|147927423|gb|EDK78453.1| DNA primase [Streptococcus pneumoniae SP9-BS68]
 gi|168996529|gb|ACA37141.1| DNA primase [Streptococcus pneumoniae Hungary19A-6]
 gi|183572567|gb|EDT93095.1| DNA primase [Streptococcus pneumoniae SP195]
 gi|332073430|gb|EGI83909.1| DNA primase [Streptococcus pneumoniae GA17570]
          Length = 586

 Score =  344 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 150/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G  FIE+VQ L    G+ +       +K      DL  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVPFIEAVQILGQRVGIEVEKPLYSEQKSASPHQDLYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKRSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|313888929|ref|ZP_07822589.1| DNA primase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845102|gb|EFR32503.1| DNA primase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 596

 Score =  344 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 157/632 (24%), Positives = 275/632 (43%), Gaps = 43/632 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + + ++     I +LIG+YVD  R  +N     Y   CPFH EKTPSF  + SK  +
Sbjct: 4   INDNVLDEIRDRADIVDLIGEYVDLKRSGSN-----YMGLCPFHSEKTPSFSVSPSKSIF 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C V GD ++F+      SF E+V+ LA    V L V   + ++  + +  L  +  
Sbjct: 59  KCFGCGVGGDVITFVMKRENLSFPEAVEFLADKYNVRLEVYKDENKEAREKRNRLYEINR 118

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A   F  +      ++   YL  R +    I  + +GY+ DS   L +HL + G+ E++
Sbjct: 119 EAGLHFLKN--YEASQKTQLYLKNRMLSDKTIRSYGIGYSKDSWTDLYDHLTKMGYREDE 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++E  L I    +    DRFR+R++FPI +   ++I FG R        KYLNS ET +F
Sbjct: 177 LLELNL-ISKSKNGNYIDRFRDRVMFPIINRNNRIIGFGARAF-GDAKPKYLNSRETPIF 234

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           HKG N++N                R ++   IILVEGYMDV+SL  +G+   V+SLGT+L
Sbjct: 235 HKGSNVFNIN-----------IISRESTRERIILVEGYMDVISLYNSGINYSVASLGTSL 283

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q  ++ K++  I +C+D D  G+ A  +AID+    L    +   + L  G DPD F
Sbjct: 284 TIDQANIIKKMARDIYICYDSDSAGINATSRAIDI---FLQAAVKPKIIELEGGLDPDDF 340

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I+ YG   FE  I  ++  ++   K+  EN +    +  +   I     ++ IK+   R 
Sbjct: 341 IKKYGIEGFENKIKSAISYIEFKIKKLKENFNLEDSEGLSNFTIESAKILSSIKNPIERD 400

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            + +    +    +       +   R   K  +    K      +  S          + 
Sbjct: 401 IFVKNFSKKYNISYTAIENYINYLNRNKLKETKREKFKVKKNTNVVKSNK--------AR 452

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            +  LL   +    I +    ++    + N   + ++  +   + E+             
Sbjct: 453 AQEELLSYSLLDNDIYKYIRNKIEVFYFTNAMTRAVFEEIPRLYEEEMEV---------- 502

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            R F  LL+  +R +    + +  +  N + V       L        L  +K +I + I
Sbjct: 503 -RDFLSLLES-NRLIDKEFVENILSIINDIHVNDKIVDELINTIEGNYLRDRKNKILENI 560

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++  +         +  L E+++++++++ +
Sbjct: 561 EKLQGEENKNLLLEALKELQEINLKLNELKEE 592


>gi|91203807|emb|CAJ71460.1| similar to DNA primase [Candidatus Kuenenia stuttgartiensis]
          Length = 599

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 151/637 (23%), Positives = 264/637 (41%), Gaps = 50/637 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P++ I ++     I  +I +Y+   +         +   CPFH EKTPSF  N  K  +
Sbjct: 5   IPQEKIAEIQFAADIVQIISEYIQLKQSGK-----AFIGLCPFHSEKTPSFFVNPDKKLF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRLI 121
            CF C   G    F+    G  F+E+V+ +A+ + V L      +       +T L    
Sbjct: 60  KCFGCGEGGTVFQFVMKQEGMDFVEAVKLVASKSRVDLTQIYAKETSLSSSKKTHLYETT 119

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             A  F+   L +A   K+   YL +R I+ H+I+ F +GYAP    SL +  +    S 
Sbjct: 120 RFAATFYQKMLLDAMKGKKARDYLLKRKINDHSIKNFCIGYAPAEWDSLVKMCKGGNVSM 179

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            ++ +AGL+I      + YDRFR+RLIFPI   R QV+ FGGR L      KYLNSPET+
Sbjct: 180 YQLQQAGLIIQKKERDSYYDRFRDRLIFPILDIRKQVVGFGGRAL-DDSLPKYLNSPETV 238

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF+K   LY    A + + K  +          +IL+EGY DV+   Q G++  V+ LGT
Sbjct: 239 LFNKSNILYGIDIAKSAILKKQK----------VILMEGYTDVIMAHQHGIEWAVAVLGT 288

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+++  LR L +   R++L  D D  G +++ + +D+    +     V    L +G DP 
Sbjct: 289 AISKQHLRSLRQYCSRVILLLDADSAGQKSSDRNLDI---FIEEEFDVKIAQLPKGYDPC 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            F+   G   F   I  +        +        +T   +A    ++        D   
Sbjct: 346 DFLLAEGPEKFLSYIDSAKDFFHFKIEFAATKWDMSTVHGKANALNNVLATAMKTPDAIK 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R    + I + +        +      R     A + +QK              +     
Sbjct: 406 RNLLIKLISEEMSIDEAALWSHIKNVKRPLSVPANNNNQKTK------------QRLDAS 453

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           S+ E  +L  +++  +++     E     +DN +  ++   +   + + K    E++   
Sbjct: 454 SMAEREILYLMLSCNSLIPRIINEKIPEEFDNKDFLEIAGRIVEIYQKNKAVKEEDVLHS 513

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598
           + E    +LL  +        +          D R   +  +  +KR      ++++I  
Sbjct: 514 IGEARLNKLLVDIVTTREFQDMT---------DYRDRLEACILFFKRRN----RRKDIHI 560

Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             +K +    +  + E   +L+   H+    IH +++
Sbjct: 561 TKKKMLETARSSHKEEDIVMLLEEYHKKSRNIHALKN 597


>gi|183602554|ref|ZP_02963919.1| DNA primase [Bifidobacterium animalis subsp. lactis HN019]
 gi|241190628|ref|YP_002968022.1| DNA primase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196034|ref|YP_002969589.1| DNA primase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218195|gb|EDT88841.1| DNA primase [Bifidobacterium animalis subsp. lactis HN019]
 gi|240249020|gb|ACS45960.1| DNA primase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250588|gb|ACS47527.1| DNA primase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793617|gb|ADG33152.1| DNA primase [Bifidobacterium animalis subsp. lactis V9]
          Length = 693

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 154/718 (21%), Positives = 256/718 (35%), Gaps = 103/718 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I+ +     + +++   V           G Y   CPFHDE+TPSF+   S G +
Sbjct: 5   IKKEDIERVRNAADLYDIVSATVALKPSG----VGAYVGLCPFHDERTPSFNVRPSVGSW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTDLIR 119
           +CF C   GD   F+       F E+V+ LA    + L   +        +   +  L+ 
Sbjct: 61  HCFGCGRGGDVFRFVQEQENIDFREAVELLADKYHIELHYENAGGANDSHRGTKRARLLE 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             E A  FF   +           L  R         F  GYAP    +L  HL  KGF+
Sbjct: 121 ANEEAQKFFVSQILTEEALPARKLLAGRNFSQQDCARFGCGYAPQGWDNLVRHLADKGFT 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
           ++++++AGL      +   YD FR R  +PIR S G+ + FG R L   +S+  KY+N+P
Sbjct: 181 QQEMLDAGLARQ--GARGIYDYFRGRATWPIRDSTGRTLGFGARKLYDDDSIAAKYINTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T L+HK + LY    A   + K             +++VEGY DV+++  AGV   V++
Sbjct: 239 DTQLYHKNQVLYGIDLAKPQIVKK----------RQVVIVEGYTDVMAMHLAGVDTAVAT 288

Query: 298 LGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAI 335
            GTA  E   +++ +L                        RIV  FDGD  G +AA  A 
Sbjct: 289 CGTAFGEEHAKIVRRLISDDSLGGVQLTGPLRVEGEPLSSRIVFTFDGDAAGQKAALHAF 348

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
            L         +    +     DP       G  A   L+V + PL D +          
Sbjct: 349 GLDSSFQT---QTFVAVADNNLDPCDLRIERGDDALRALVVNARPLYDFVIDVAIGKFDT 405

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---- 451
                +      +   I  IKD+ L   Y++    R+         E     R       
Sbjct: 406 QYGTGQMGAVKAVAPLIARIKDKSLLDLYTRKAARRIGIDLTILQREVQSARRAQHVPNE 465

Query: 452 -----------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR--------EAALLLTLI 492
                      +N     ++ P        + +G    +   R        E   + TL+
Sbjct: 466 DAYASRQRGYDRNYEREREQPPMNEARMREIERGNARSQHFHRIDDNVFITEMQFMATLV 525

Query: 493 NHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLPEEIHQRLCERG---FG 547
             P  +  E ++ L    +     Q ++  + +     +    P +    L + G     
Sbjct: 526 QIPRAVNAELFKALTVHCFSTPVFQTMFEAVEAAGGLPEPGTSPGQWLHALTKAGGPLLA 585

Query: 548 ELLKQLD-------------------RQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            ++ +L                    +Q   +       EA+    RQ   Q  A     
Sbjct: 586 PVITELAVMNLPLPQNMANGNAAQTGQQEPGSQSAQPMPEASAEQ-RQYANQLTASLIDT 644

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
             + R+   + +Q ++ T   +      L   + EV  +   ++SQ      FG  +G
Sbjct: 645 GYM-RRIGILRQQASRATNTHDQ---IRLFGAITEVERERKDLQSQI-----FGSAAG 693


>gi|331001842|ref|ZP_08325364.1| hypothetical protein HMPREF0491_00226 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412816|gb|EGG92199.1| hypothetical protein HMPREF0491_00226 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 579

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 145/632 (22%), Positives = 260/632 (41%), Gaps = 57/632 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  D I ++     I +++  Y+   ++  N     Y   CPFH EK+PSF  +  K 
Sbjct: 1   MYYSNDIIDEVRSRNDIVDVVSSYMKIQKKGAN-----YMGLCPFHAEKSPSFSVSPGKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++CF C V GD ++F+      SF E++  LA  A + LP ++     K   +  ++ +
Sbjct: 56  LFHCFGCGVGGDVITFIRQYENYSFNEALALLAKRANIELPQINDNDRAKSDEKNIILEI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A  +F+ +L +   +    Y  +RG+DS  I  F LG+A  +   L   L+  G+S+
Sbjct: 116 NKTAARYFYENLFSKEGEAGLKYFKDRGLDSKDITHFGLGFAKKTPNDLYYFLKDSGYSD 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + + ++GL     +     DRF NR++FPI  +  +VI FGGR L      KY+NSPET+
Sbjct: 176 DILKKSGL--INIDEKGVRDRFWNRVMFPIIDANSRVIGFGGRVL-GDGLPKYVNSPETL 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
            F K +NLY    A    +             F ++ EGYMDV++L  AG +N V+SLGT
Sbjct: 233 AFDKSRNLYGLNFAKRTRR------------DFFLICEGYMDVIALHNAGFENSVASLGT 280

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT   ++LL + + +++L +D D  G+ AA +AI L          V  + ++  +DPD
Sbjct: 281 ALTALHVKLLGRYTKKVILTYDSDGAGINAAKRAIPL---LKEENINVKVLSMAPYKDPD 337

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FI+  G   F+K I  +        +    + + N PDER      +   ++   ++  
Sbjct: 338 EFIKNLGSEEFQKRIDNADNAFLWEIEVLKRDYNLNEPDERTSFYKEVARMLSLFSEKLE 397

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y+ A+  RL   +       + +G       +   ++              K     
Sbjct: 398 RENYTHAVAKRLMIEYNALFDMVNSFGNTAGFIKKDVSKENK------------KTDDGY 445

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +  +  LL  ++    +     + ++   +     + + + +F                 
Sbjct: 446 TKAQGLLLTWMVEETELFDRISEYISPENFTEGFYRDVATKIFEKLKTGDMTFSNICDDY 505

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             +    +LL ++        L     +  I +     +QA                   
Sbjct: 506 TEDIEKQKLLSKILNTTLGTNLSDDEKKKAITESILKIRQA------------------- 546

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
               +  K +  K       + E    + ++ 
Sbjct: 547 ---SLDEKSKNAKGIEEFQKIIEEQAILRKLR 575


>gi|332307720|ref|YP_004435571.1| DNA primase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175049|gb|AEE24303.1| DNA primase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 588

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 165/625 (26%), Positives = 286/625 (45%), Gaps = 53/625 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR+FI DL+    I  ++   V   +   N     Y ACCPFH+EK+PSF  +  K F
Sbjct: 4   RIPREFIDDLIARTDIVEVVDNRVKLKKAGRN-----YQACCPFHNEKSPSFTVSQDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117
           Y+CF C   G+ +SFL       F E+++ LA    V +P           ++++ + D 
Sbjct: 59  YHCFGCGAHGNVISFLMEYDRLEFPEAIEELAQYHSVDVPREKSSTPAPTAEQKQQKADD 118

Query: 118 IRLIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             L+E  + +F H LK   DK R   YL +RG+    ++ F +GYAP    ++     + 
Sbjct: 119 YELMETISRYFSHQLKVHSDKDRAIDYLKKRGLSGEVVKAFGIGYAPTEWDAVLSTFGRT 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
             +++++++  L I  +++   +D FR R++FPIR  RG+++ FGGR L    + KYLNS
Sbjct: 179 PEAQQQLLDLKL-ITENDNRRRFDFFRERIMFPIRDKRGRIVGFGGRVL-GDGTPKYLNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +FHKG  LY F+ A    +   R          I++VEGYMDV++L Q  ++  V+
Sbjct: 237 PETRIFHKGNELYGFYQAKQAHRNLPR----------IMIVEGYMDVVALAQFDIKYAVA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGTA T   +++L++ +  +V C+DGD  G  AA++A++  L +L  G  + F+ L  G
Sbjct: 287 SLGTATTPEHVQMLFRTTSEVVCCYDGDRAGREAAWRALENALAYLKDGVEMKFLFLPDG 346

Query: 357 EDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           EDPD+ +R  GK AF +KL+ +S+PL    +    +     + + +A L+      I  I
Sbjct: 347 EDPDTLVRQIGKEAFEQKLVSDSVPLSKFFFDNLLQRHHIGSAEGKAALKAEAMPLIEQI 406

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
             +  R   +  +   +    +  + +        K  A+          L  ++L K K
Sbjct: 407 LGENQRAILTSELSTHMGDRNRHRLEQDVAKANQHKAGAK----------LDFTALNKAK 456

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQE--LADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           +S         ++  L++ P I  E  Q    A        L  L + LF   + +    
Sbjct: 457 ISPV-----RMMIRLLLDQPRIAIECQQTNPAALGDMQVPGLDFL-TELFEFCLSKPNAN 510

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             ++ +        + L +L              E    +    ++ + A    +     
Sbjct: 511 TAQVLEHFRHHPQSKNLAKLLGW-----------EYAEENQALVFKDSFAKLLDWHF-KS 558

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILI 618
           + +E+  +        + ++   L+
Sbjct: 559 RMDELMSKARLGNLSVDEKQELNLL 583


>gi|302877608|ref|YP_003846172.1| DNA primase [Gallionella capsiferriformans ES-2]
 gi|302580397|gb|ADL54408.1| DNA primase [Gallionella capsiferriformans ES-2]
          Length = 585

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 176/623 (28%), Positives = 283/623 (45%), Gaps = 52/623 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI+DLL  + I ++I +YV   +   N     Y ACCPFH+EK+PSF  + SK FY
Sbjct: 2   IPKSFIQDLLNRLDIVDVIERYVPLKKAGGN-----YVACCPFHNEKSPSFTVSQSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT-DLIRLI 121
           +CF C V G  + F+   LG  F+E+++ LA   G+ +P       +  K    DL  ++
Sbjct: 57  HCFGCGVHGTAVGFVMEHLGLGFVEAIEDLAQSVGMQVPYEQQASGESFKKVAPDLYEVM 116

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           +VAT ++   LK     R   YL  RG+       F +G+AP+   +L        +   
Sbjct: 117 QVATRYYREQLK--LSTRAIDYLKNRGLSGEIAARFGIGFAPEGWQNLSAAF--PDYQSA 172

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            ++E GL+I   +    YDRFR+R++FPI + R QVI FGGR L KGE  KYLNSPET L
Sbjct: 173 TLVETGLVI-TGDGDKRYDRFRDRVMFPIVNVRSQVIGFGGRVLDKGEP-KYLNSPETPL 230

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KG+ LY  + A   ++   R          +++VEGYMDV++L Q GV   V++LGTA
Sbjct: 231 FEKGRELYGLYQAQKAIRAHGR----------VLVVEGYMDVVALAQHGVDYAVATLGTA 280

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T Y ++ L +L+ +IV CFDGD  G +AA++A++  L HL  G  ++F+ L    DPDS
Sbjct: 281 TTPYHIQKLLRLADQIVFCFDGDKAGRKAAWRALENALPHLQDGKLLSFLFLPAEHDPDS 340

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           FIR +G+  FE+ I E++PL   L +  T      T + R +L    K  ++ I      
Sbjct: 341 FIREFGQAEFEQRIAEAMPLSGYLLRELTSELDLQTQEGRNQLLHRAKPLLSVIVSPVTS 400

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + +         +    +                               K ++ P 
Sbjct: 401 LLLRKEVAALSGVSQAELEALYE-----------------IKPIAHAPRPSLKKAARTPF 443

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             +  +L  LI  P +  +   +         + + + + L +            + Q  
Sbjct: 444 PVQRLMLQCLIAQPGLGVDMPADWHGE---GADAEAIVAVLSALREADYKISSPALMQMF 500

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
               +   L Q + ++     W  + +        G    L   +R      Q + ++ +
Sbjct: 501 EGTSYARALAQAEAEMLA---WGDSFDVAAE--FAGLVGKLEEGQRRD----QFQALQSK 551

Query: 602 IAQVTAKG-EAEKTAILISILHE 623
           ++Q    G   ++    + +L  
Sbjct: 552 LSQGGLSGLSVDEREQYLRLLQR 574


>gi|119473195|ref|ZP_01614892.1| DNA primase [Alteromonadales bacterium TW-7]
 gi|119444559|gb|EAW25874.1| DNA primase [Alteromonadales bacterium TW-7]
          Length = 583

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 156/630 (24%), Positives = 274/630 (43%), Gaps = 58/630 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   +        DY ACCPFH+EK+PSF  +  K F
Sbjct: 4   KIPRSFIDDLLARTDIVDLIDSKVGLKKAGK-----DYQACCPFHNEKSPSFTVSQDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118
           Y+CF C   G+ +SF+       F+++++ LA++  + +P         E+    +    
Sbjct: 59  YHCFGCGANGNAISFVMEYDKLEFVDAIEELASMLNLDVPREQGGSSAPERTAAQKRSDY 118

Query: 119 RLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L+     F+ H LK+      +  Y+  RG+    ++ F +GYAP     L   L +  
Sbjct: 119 DLMLHTARFYQHQLKHHANSAAVIDYVKGRGLSGETVKKFMIGYAPSEWDGLCLQLGRNK 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
             +E+++E  L  +       +D FR+RL+FPIR  RG+V+AFGGR +   +  KYLNSP
Sbjct: 179 EQKEQLVELKLASEKTPGRQ-FDFFRDRLMFPIRDKRGRVVAFGGRVMQADQGPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHKG  LY  + A    +K             I++VEGYMDV++L +  ++  V++
Sbjct: 238 ETRIFHKGFELYGLYEAKQAHKKL----------EHILIVEGYMDVVALAEKEIEYAVAA 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA T   +  L++ + +++ C+DGD  G  AA++A++  L +L  G  +NFV L  GE
Sbjct: 288 LGTATTSEHMHTLFRTTDKVICCYDGDRAGRDAAWRALENALPYLNDGKALNFVFLPDGE 347

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS ++  GK AFE+ + E+     +++ + ++         +A+L       I  I  
Sbjct: 348 DPDSLVQKEGKEAFEQRLSEADDFTKVMFNKLSQEIDLTLDSGKAKLLSAALPLIEKIPS 407

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                +Y + I ++L +L  +   + +   +  K+      +   +              
Sbjct: 408 ----EFYQENILEQLGRLIGRTREQLNNRLKTPKQQHSIERKFKITPM------------ 451

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF-LFSDFVEQKYFLPEE 536
                     +  LI HP + +               L +L    +    +  +      
Sbjct: 452 -------RQAIGILIQHPNLAKSV-----------PYLPELAQMNIAGIGLLLRLQQQAL 493

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             + +      E  +  D       L +   E N   +   ++     +   + L+ + E
Sbjct: 494 EKETITTAQILEFFRDTDDYEPLIKLATWQHEINEERLETVFKNTFK-FIEDQCLNYRLE 552

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            +   I   T    +++      ++  +  
Sbjct: 553 TLL--IKDKTQGLNSDERLECHLLMTALKA 580


>gi|116494986|ref|YP_806720.1| DNA primase [Lactobacillus casei ATCC 334]
 gi|227535008|ref|ZP_03965057.1| DNA primase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|116105136|gb|ABJ70278.1| DNA primase [Lactobacillus casei ATCC 334]
 gi|227187323|gb|EEI67390.1| DNA primase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 595

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 162/633 (25%), Positives = 266/633 (42%), Gaps = 41/633 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   +  +L  + I++ IGQYV   +   N      +  CPFH+E TPSF  N+ K  +
Sbjct: 2   IPEATVDKVLKAVNIADYIGQYVQLRKTGQNL-----FGLCPFHEEHTPSFSVNEPKQIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CFSC   G+   F+      +F E+V+++A  AG+PL V        +   +    +++
Sbjct: 57  HCFSCGRGGNVFKFVMDYDNATFPEAVKKVADFAGMPLDVQVGHAAPVDPEISKQQHILQ 116

Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
              D FHH L N  + +    YL +RG+    IE F+LGYAP+ R  L   L  +    +
Sbjct: 117 DTADLFHHILMNTEKGQTALDYLHKRGLTDDTIEAFQLGYAPEERNLLVAFLNNRKVDYQ 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
               +GL ++       +DRF +R++FP+  S GQVI F GR LSK ++  KYLNSPET 
Sbjct: 177 DQRASGLFVEDQEG-KLFDRFNDRVMFPLTDSHGQVIGFSGRILSKDKTQAKYLNSPETK 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF+K   L+N   A     +              IL EGYMDV++  QAGV+  ++S+GT
Sbjct: 236 LFNKRDVLFNLHRAKADFGRDGGP----------ILFEGYMDVIAAYQAGVKTGIASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ ++  LS R+ +C+DGD+PG +A  +A+ ++  H     + + V+L  G DPD
Sbjct: 286 SLTTEQVDIISHLSKRLTVCYDGDEPGQKAIERAVAMLADHPR--LQTDVVVLPDGMDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FIR  G  AF+  +   L     + +        N    +          I  I +   
Sbjct: 344 EFIRARGAEAFQAQVKSVLTPTAFILQFLARGVDMNNDQAKLTYLNAALKTIGKISNPVA 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y + + D                       A  +    P            +   + 
Sbjct: 404 RAVYVKQLADTTGVPESALNQSLPAPQ-----QAVQQQSSAPVSYQTAPVNQPVRPIDRY 458

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +  +  LL  + +   ++Q          +     Q L++       EQ          R
Sbjct: 459 TAAQRQLLYYVWHDDLVMQRLKN--TAFTFPVPHFQTLFTGWLDFLHEQPDGELAGFLDR 516

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +     +   +  QV         TEA I ++ Q    A  +         + + I++
Sbjct: 517 V-DPDLSGVAASVAMQVLPEA-----TEATIDELIQTITSASTV--------ERLQAIKQ 562

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            I +    G+ +K   L      +   + Q + 
Sbjct: 563 AITEAQRLGDKQKLGELTVQYVNLMKLLKQQQG 595


>gi|124267676|ref|YP_001021680.1| putative DNA primase protein [Methylibium petroleiphilum PM1]
 gi|124260451|gb|ABM95445.1| putative DNA primase protein [Methylibium petroleiphilum PM1]
          Length = 606

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 171/640 (26%), Positives = 279/640 (43%), Gaps = 46/640 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI +LL    I  +IG +V+  R        D+   CPFH EKTPSF+   +K FY
Sbjct: 2   IPQAFIDELLARADIVEVIGPHVELKRAGK-----DFKGLCPFHGEKTPSFYVIPAKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------KIQTD 116
           +CF C  +G  L FL+  +G  F E+V+ LA   G+ +P  D   E++E      + Q  
Sbjct: 57  HCFGCGAQGHALRFLTEHVGLDFPEAVRDLAQRLGMTVPQEDSSPEERERARAAKERQAT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  ++  A + +   L+ +   R   YL  RG+       F +GYAP+    L     + 
Sbjct: 117 LSEVLAKAGEHWRKQLRGS--PRAVNYLKGRGLTGEIAARFGMGYAPEGWRGLASVFPRY 174

Query: 177 GFSEEKIIEAGLLI-DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
                      ++  D       YDRFR+R++FPIRS +G+VI FGGR L  GE  KYLN
Sbjct: 175 DDPLLAESGLVIVQGDEGPEQKRYDRFRDRIMFPIRSVQGEVIGFGGRVLDAGEP-KYLN 233

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KG+ LY    A   L+             + ++VEGYMDV++L Q G  N V
Sbjct: 234 SPETPVFVKGRELYGLHEARQALR----------ERGYALVVEGYMDVVALAQLGFPNAV 283

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T   +  L + + RIV  FDGD  G RAA +A++  L H      + F+ L  
Sbjct: 284 ATLGTACTAEHVHKLLRFTDRIVFSFDGDAAGRRAAGRALEAALPHASDTRSMKFLFLPA 343

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPDSF+R +G  AFE  + +++PL   L +   E    ++ + RA +  + K   + +
Sbjct: 344 EHDPDSFVRAHGTAAFEACVEQAVPLSRQLLEVAREGCDLDSAEGRARMLANAKPLWSAL 403

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            D  LR      +  R   L    +    G     ++ A     +   + L  ++    +
Sbjct: 404 PDGALRRQLLGELA-RAGALESAELQALWGGQAPPRREAARPPPRPNRRALRAATSSLDR 462

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQKYFLP 534
            +             L+    +         ++  +  +     + +L   F E+    P
Sbjct: 463 GA-----------WLLVQRCDLWDRLDVATHELLCEVLDPHGSFFRWLDRRFHEEGPLSP 511

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           + +   +   G G  L +L +++       A  E  + +  +   + +A   R   L R 
Sbjct: 512 QTLLAEMQAGGEGPGLAELAQRI------GALHEVEVGEHAEAELRVVADRVRLDALERD 565

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            E +    A+       +          E+  ++ + ++ 
Sbjct: 566 LESLTA--AEPLTADMLDTIRRTRQNADEIKRRLARGQTT 603


>gi|253566363|ref|ZP_04843817.1| DNA primase [Bacteroides sp. 3_2_5]
 gi|251945467|gb|EES85905.1| DNA primase [Bacteroides sp. 3_2_5]
          Length = 675

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 156/680 (22%), Positives = 289/680 (42%), Gaps = 70/680 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I  ++  +V   +R  N     Y   CPFH+EKTPSF  + SKG  
Sbjct: 10  IDQATIDRILDVAQIVEVVSDFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPSKGLC 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CFSC   G+ + F+      S+ E+++ LA    + +   +   E+KE    +  +  +
Sbjct: 65  KCFSCGKGGNAVHFIMEHEQMSYPEALRYLAKKYNIEIKERELTNEEKEVQSNRESMFIV 124

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y  +RG     I+ F+LG++ + R +L +   +KGF
Sbjct: 125 NNFARDYFQNILKNHVDGRSIGLAYFRQRGFRDDIIDKFQLGFSTEGRDALAQEALRKGF 184

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
            +E +++ GL  +  +     DRF  R++FP+ +  G+V+AFGGR LS       KY+NS
Sbjct: 185 KQEFLVKTGLCYET-DDHKLRDRFWGRVMFPVHTLSGKVVAFGGRVLSTENKKLAKYVNS 243

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+GV+NVV+
Sbjct: 244 PESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVVA 293

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S GT+LT  Q+RL+ + +  I + +DGD  G++A+ + ID+    L  G  +   LL  G
Sbjct: 294 SSGTSLTPGQIRLIHRFTNNITVLYDGDMAGIKASIRGIDM---LLEEGMNIKVCLLPDG 350

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPDSF R +  T F+  I E          +     +   P +RAEL   +   I  I 
Sbjct: 351 DDPDSFARKHNATEFQNFIQEHETDFIRFKAQLLMEDAGKDPMKRAELINDIVRSIAVIP 410

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS------ 470
           +  +R  Y +     L+   +  ++E +       +          +             
Sbjct: 411 EAIVRDVYIKECGQLLRIEDKLLVSEVAKRRELQAEKGNKPIASNNAPTPQPGEMPPPFP 470

Query: 471 -------------LVKGKLSKKPSLREAALLLTLINHPA-----------------ILQE 500
                          +GK  ++    E  ++  ++ +                   +++ 
Sbjct: 471 PEEMEADTYQSFIPQEGKEGQEFYKYERLIIQMIVRYGEKVMCNLTDEEGNEVPVTVVEY 530

Query: 501 QYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
              +L   ++ + N   +++ S       +Q++           +     +  +L     
Sbjct: 531 VINDLKEDELAFHNPLHRRILSEASEHIHDQEFASERFFVAH-PDPKISTIATELASDRY 589

Query: 559 DAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
               + + T+  + D  + Y+    L +  +  +++ + + I   +   +   +  +   
Sbjct: 590 QLSKYHSKTQKLVTDEERLYEMVPMLMINFKNAIVAEELKHIMYALQDPSIANDNAQCDA 649

Query: 617 LISILHEVHIQIHQIESQEA 636
           ++    E+     +I++  A
Sbjct: 650 VMQRYKEMK----EIQNLMA 665


>gi|167842196|ref|ZP_02468880.1| DNA primase [Burkholderia thailandensis MSMB43]
          Length = 625

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 173/657 (26%), Positives = 276/657 (42%), Gaps = 66/657 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--------------KIE 108
           +CF C   G  + FL    G +F E+VQ LA   G+ +P                     
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSPMRGAGGGSGEGHAPPA 116

Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS 168
             + + T L  +++ A D++   L+         YL  RG+       F LGYAPD   +
Sbjct: 117 ASKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQN 174

Query: 169 LREHLRQKGFSEEK---IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
           L                ++      D +  A  YDRFR R++FPIR+ +GQVI FGGR L
Sbjct: 175 LESAFGDYRHDSLVDAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVL 234

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
             GE  KYLNSPET LF+KG  LY  F A   ++             + ++VEGYMDV++
Sbjct: 235 DGGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVA 283

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           L Q G  N V++LGTA T   ++ L + +  +V  FDGD  G RAA +A++  L H    
Sbjct: 284 LAQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADN 343

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             + F+ L    DPDS++R +G  AF + +  ++PL   L    T  +  + P+ RA+  
Sbjct: 344 RTIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKAL 403

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              K  +  +    LR        DRLQ  F +         R                 
Sbjct: 404 FDAKPLLQALPANALRAQIMHMFADRLQIPFDEVAALAEVDARIA--------------- 448

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                       ++ +  E   L  L+ HP I      E          + +L+  +   
Sbjct: 449 APARQAPARSERRRVTDSEKRALRNLVMHPRIAAALDDESVATLRALPRIGELFDEVIGH 508

Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577
                       L + +        + E+ +++   D  VRD    +  ++A   ++R+ 
Sbjct: 509 AHALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDAAQEELRER 568

Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +      QA  L  R+ +   +   + K+     +  E  +   L   L ++  ++
Sbjct: 569 ERIAGEELQAAVLKMRYDVCCDRLNSLSKR--SAPSSEELAEIKDLHQNLADMKRRL 623


>gi|121607097|ref|YP_994904.1| DNA primase [Verminephrobacter eiseniae EF01-2]
 gi|121551737|gb|ABM55886.1| DNA primase [Verminephrobacter eiseniae EF01-2]
          Length = 653

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 168/683 (24%), Positives = 283/683 (41%), Gaps = 89/683 (13%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  FI++LL  I + +++G+YV   +   N         CPFH+EK+PSF  + +K 
Sbjct: 1   MSIPASFIQELLARIDLVDIVGRYVPLKKGGVNL-----MGLCPFHEEKSPSFSVSPAKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115
           FY+CF C   GD +SFL A  G  F+E+VQ LA  AG+ +P  +     KE+        
Sbjct: 56  FYHCFGCGKSGDAISFLMAQAGLDFVEAVQDLARQAGLQVPDDNSSPADKERAAAARQKQ 115

Query: 116 -DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  ++E A   +   L +        Y   RG+     E + LGYAPD   SL     
Sbjct: 116 ATLSEVLEKAAAAYRQHLHDT--PHAIAYFKSRGVSGAIAERYGLGYAPDGWRSLASCFA 173

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
            +           ++++ ++    YDRFRNR++FPIR+ +G+ I FGGR L + +  KYL
Sbjct: 174 -RYDDPLLAESGLVIVNAEDGGKRYDRFRNRVMFPIRNVKGECIGFGGRVLGQDKP-KYL 231

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKG  LY  F A + +              + ++ EGYMDV++L Q G  N 
Sbjct: 232 NSPETPVFHKGHELYGLFEARSAIH----------EQGYALVTEGYMDVVALAQRGFPNT 281

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V++LGTA T   ++ L + +  +V  FDGD  G RAA KA+D  L H      + F+ L 
Sbjct: 282 VATLGTACTPEHVQKLLRFTASVVFSFDGDAAGRRAARKALDGALPHASDTRSIKFLFLP 341

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPDSFIR +G  AF + + +++PL   L +  +E     + + RA +  + +     
Sbjct: 342 AEHDPDSFIRSHGPEAFARHVGDAVPLSRFLLETASEGCDLGSAEGRAHMASNARPLWTA 401

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKY----------------------------------- 439
           + D  L+      +    Q   +                                     
Sbjct: 402 LPDGVLKRQLLAELAQLTQLDARDLSDLWSPDHSRQSQRPANPGHPPALDDRHPPRDASN 461

Query: 440 --------ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
                     +   + +     + + +++       Q  L +   + +       LL  +
Sbjct: 462 GHGDSGGYAVQRPAWRKSADWQSGNGNRRAAPWPPSQPRLPRTPNASRADHAARLLLAHM 521

Query: 492 INHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                +LQE   +              L+++L + F E+       + + L E     L 
Sbjct: 522 ----DLLQELTHDDHSTLCAQPAPHGPLFAWLEAQFHERGPVAWARLRESLREHECEALA 577

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++           A TE  + ++    +  L    +   + +Q++ +  Q AQ     +
Sbjct: 578 LKVMTGA------HAQTEGELQELWLELRDLLN-RMQIEDIKQQQKLLILQAAQDPTALD 630

Query: 611 AEKTAILISILHEVHIQIHQIES 633
                        +  +   +++
Sbjct: 631 ---------RYRALEQKRTALQN 644


>gi|15827366|ref|NP_301629.1| DNA primase [Mycobacterium leprae TN]
 gi|221229843|ref|YP_002503259.1| DNA primase [Mycobacterium leprae Br4923]
 gi|18202773|sp|Q9CCG2|PRIM_MYCLE RecName: Full=DNA primase
 gi|13092915|emb|CAC30343.1| DNA primase [Mycobacterium leprae]
 gi|219932950|emb|CAR70928.1| DNA primase [Mycobacterium leprae Br4923]
          Length = 642

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 134/654 (20%), Positives = 247/654 (37%), Gaps = 44/654 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I  +   + I  ++G YV   R             CPFH+EK+PSFH   + G 
Sbjct: 4   RIPDRDIAAIRERVCIEEVVGDYVQLRRAGA----DSLKGLCPFHNEKSPSFHVRPNHGH 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD  +F+  +   SF+E+V+ LA   G  +         +     ++ LI 
Sbjct: 60  FHCFGCSEGGDVYAFIQKIEHVSFVEAVEMLADRIGHTINYFGTATSVQRDRGSRSRLIA 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               A  F+  +L++        YL ER  D++A   F  G+AP    SL ++L  KGF 
Sbjct: 120 ANAAAAAFYAAALESDEAAPARQYLMERNFDANAARHFGCGFAPSGWDSLTKYLISKGFE 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
             ++  AGL           DRF  RL++PI +  G+VI FG R L   + +  KY+N+P
Sbjct: 180 FTELEAAGLSRQ--GRRGPMDRFHRRLLWPILTLAGEVIGFGARRLFDDDPMEAKYVNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+L+ K   ++    A   + K              ++VEGY DV+++  AGV   V+S
Sbjct: 238 ETLLYKKSSVMFGIDLAKRDIVK----------GHQAVVVEGYTDVMAMHLAGVTTAVAS 287

Query: 298 LGTALTEYQLRLLWK-----LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            GTA  +  L +L +        R  L F  D      A           + G     V 
Sbjct: 288 CGTAFGDEHLAMLRRLIMDDNWYRGELIFVFDGDAAGQAAALKAFDGDQQVAGKSFVAV- 346

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL--EIHLKN 410
            + G DP       G  A   L+    P+ +   +    +      D +A++        
Sbjct: 347 AADGMDPCDLRLSSGDQALRDLVACRKPMFEFAIRSLIPDGMVLDDDPQAKVDALRRSVP 406

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQ----KYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            +  I+D  LR  Y++ +        +      + E +      ++  R       S  +
Sbjct: 407 LVARIRDYALRDEYARRLAGWTGWSDEGQVLARVREEANRRSVPERTRRRSVSVEQSPFM 466

Query: 467 MQSSLVKGKLSKKPSLR------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                   +L+ +P  R      +   L +++ +P +    +  L    + +     + +
Sbjct: 467 QPPGAPADQLAARPDPRDPTLWPQREALKSVLQYPVLAGPVFDTLTVESFTHPGYGAVRA 526

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            + +           +    + ++    L+  L  ++    +     +         Y  
Sbjct: 527 AIDAAGGASAGITGAQWIDVVRQQTTSALIAGLINELGVESIQVDDEKLP------RYID 580

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +    +   + RQ  E++ ++ +++   + ++   L   L  +      +  Q
Sbjct: 581 GVLARLQEVWMGRQIAEVKSKLQRMSPIDQGDEYHELFGDLVAMEAYRRSLLEQ 634


>gi|314936317|ref|ZP_07843664.1| DNA primase [Staphylococcus hominis subsp. hominis C80]
 gi|313654936|gb|EFS18681.1| DNA primase [Staphylococcus hominis subsp. hominis C80]
          Length = 602

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 154/632 (24%), Positives = 274/632 (43%), Gaps = 35/632 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIEQSVINEIKEKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
             +CF C   G+   F+  +   SF+E+VQ L     + +     +P   +       +I
Sbjct: 56  ICHCFGCKKGGNVFQFIQDIKDISFVEAVQELGERVNIKVDIGHSNPSTTQIASEDLKMI 115

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            + E+  +++ ++L K+   +    YL  RG     I+   +GYAP++ +   + L+QKG
Sbjct: 116 EMHELINEYYMYALMKSVEGEEALNYLVNRGFTEELIKSRGIGYAPNNAHFCHDFLKQKG 175

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           +  E   EAGLL   + + + YDRFR+R++FP+++++G+++ F GRT    +  KYLNSP
Sbjct: 176 YDIELAYEAGLLSRNEENFSYYDRFRDRIMFPLKNAQGRIVGFSGRT-YNNQEPKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +F K + LYN   A   ++K          +  ++L+EG+MDV+    AG++ VV+S
Sbjct: 235 ETPIFQKRRLLYNLDSARKSIRK----------NDEVMLLEGFMDVIKADYAGLKTVVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTAL+E  + +L KL+  I L FDGD  G  A  K  +     L  G  V  V L +  
Sbjct: 285 MGTALSENHITVLKKLTSNITLMFDGDFAGQEATLKTGE---HLLKHGLNVFVVQLPKNM 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +I  +GK  F + I        +   +   +   N           +   I+ +K 
Sbjct: 342 DPDEYIVKFGKEKFIEFINNEKKSFIIYKVQFYRDEIENNDLAYERHFKEITEDISFVKS 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGKL 476
             L+      + D         ++       +   +     +    S    Q+  +    
Sbjct: 402 SILKNKIVNDVADIFNIDANTMMSNVHQQPEFISYEEDYIGNTNDNSNSNSQNLNIVFTH 461

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             K    + ALL   +    +     ++L    + N   Q ++  L   + E  Y+   +
Sbjct: 462 LNKSEKAQRALLKHFMMDKDVFLNYNRQLEANDFTNKYFQSIFKALTDYYSENDYYSISD 521

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +   + ++   E + QLD    +   +            + Y   L   K         E
Sbjct: 522 LILYIEDKDIREAIIQLDDYELNREPYDLE--------IEEYISTLNENKYEDS----IE 569

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           E+  ++ +    G+ E     + ++ + + Q 
Sbjct: 570 ELNHKLKEALRIGDVESQKYYLQMIVDKNKQR 601


>gi|158335712|ref|YP_001516884.1| DNA primase [Acaryochloris marina MBIC11017]
 gi|158305953|gb|ABW27570.1| DNA primase [Acaryochloris marina MBIC11017]
          Length = 684

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 168/676 (24%), Positives = 294/676 (43%), Gaps = 68/676 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I+ +     I +++ ++V   ++  N        CCPFHDEKTPSF  +  K F
Sbjct: 5   RLHPDTIEQVRQATDIVDVVSEHVSLRKQGRNL-----VGCCPFHDEKTPSFSVSPEKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117
           YYCF C   G+ + FL  +   SF E V  LA  + VP+  +    EKK       +  L
Sbjct: 60  YYCFGCGAGGNAIKFLMEIGQRSFSEVVLDLAQRSQVPIQTLAKDEEKKLARKLSLREQL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175
             ++ +A+ ++ H+L+  + +    Y  ++RG+ +  I+ F+LGYAP    +L +  +++
Sbjct: 120 YEILAIASRYYEHALRQPQGQNALRYARNQRGLSNETIQTFQLGYAPGGWSTLHDVLVQE 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           KGFS E + +AGL++   +    YDRFR+RL+ PI  ++ +V+ FG RTL  GE  KYLN
Sbjct: 180 KGFSPELVQQAGLIVPRKSGDGYYDRFRDRLMIPIHDAQSRVVGFGSRTL-TGEEPKYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LF+KGK L+    A   + K+ R           ++VEGY DV++L   G+ N V
Sbjct: 239 SPETELFNKGKLLFGLDKARQTIVKADRA----------VVVEGYFDVIALHSVGITNAV 288

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA---IDLVLCHLIPGNRVNFVL 352
           +S+GTAL+  Q+R L + +    +  + D              ++         ++  + 
Sbjct: 289 ASMGTALSLDQMRQLLRYTESKQVILNFDADAAGGKAAERAISEVEDQAYRGEVQLRVLN 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+D D +++ Y    +  L+ ES   +D    R  ++R     ++       +   +
Sbjct: 349 LPNGKDADEYLQEYTAEDYLDLLDESPLWLDWQIHRALQDRDLQQAEQFQAATEAIAAIL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             + +  LR +Y+      L Q   +   +     R   +  R   +    QR    +L 
Sbjct: 409 GKLPNATLRTHYTHRCAGLLSQGDSRLALQLEEALRQQVRGQRWHGRSQKWQRPADYTLR 468

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQKLWSFLFSD----- 525
           +          EA +L   ++ P   Q+ +  +   DI +  +  + LW  + +      
Sbjct: 469 EA--------AEAQILRIYLHRPQFRQDIHNAMKQRDIEFSFSHHRFLWRQILAIEDDQA 520

Query: 526 -------FVEQKYFLPEEIHQRLCERGFGELLK--QLDRQVRDAGLWSATTEANIVDVRQ 576
                   +E   F    + Q LC     E+ +   L +      L       +I     
Sbjct: 521 KLEPLHPELEAPAFDLIAVVQDLCTEYSQEMQQVYHLIQLNEKTELDILRPNLSIRAAAA 580

Query: 577 GYQQALALYKRFRLLSRQ----KEEIEKQIAQVTAKG---------EAEKTAILISI--- 620
             ++ +A  KR R L +      +  +K++ Q              E+E+   L+     
Sbjct: 581 SLER-IACEKRCRHLLQMWESAMKSAKKELGQRQILNTYLQQMLMDESEQAQSLLEEDSY 639

Query: 621 -LHEVHIQIHQIESQE 635
            L E+  +I ++  QE
Sbjct: 640 CLQELD-EIKRLYYQE 654


>gi|289178367|gb|ADC85613.1| DNA primase [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 697

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 154/718 (21%), Positives = 256/718 (35%), Gaps = 103/718 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I+ +     + +++   V           G Y   CPFHDE+TPSF+   S G +
Sbjct: 9   IKKEDIERVRNAADLYDIVSATVALKPSG----VGAYVGLCPFHDERTPSFNVRPSVGSW 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTDLIR 119
           +CF C   GD   F+       F E+V+ LA    + L   +        +   +  L+ 
Sbjct: 65  HCFGCGRGGDVFRFVQEQENIDFREAVELLADKYHIELHYENAGGANDSHRGTKRARLLE 124

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             E A  FF   +           L  R         F  GYAP    +L  HL  KGF+
Sbjct: 125 ANEEAQKFFVSQILTEEALPARKLLAGRNFSQQDCARFGCGYAPQGWDNLVRHLADKGFT 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
           ++++++AGL      +   YD FR R  +PIR S G+ + FG R L   +S+  KY+N+P
Sbjct: 185 QQEMLDAGLARQ--GARGIYDYFRGRATWPIRDSTGRTLGFGARKLYDDDSIAAKYINTP 242

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T L+HK + LY    A   + K             +++VEGY DV+++  AGV   V++
Sbjct: 243 DTQLYHKNQVLYGIDLAKPQIVKK----------RQVVIVEGYTDVMAMHLAGVDTAVAT 292

Query: 298 LGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAI 335
            GTA  E   +++ +L                        RIV  FDGD  G +AA  A 
Sbjct: 293 CGTAFGEEHAKIVRRLISDDSLGGVQLTGPLRVEGEPLSSRIVFTFDGDAAGQKAALHAF 352

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
            L         +    +     DP       G  A   L+V + PL D +          
Sbjct: 353 GLDSSFQT---QTFVAVADNNLDPCDLRIERGDDALRALVVNARPLYDFVIDVAIGKFDT 409

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---- 451
                +      +   I  IKD+ L   Y++    R+         E     R       
Sbjct: 410 QYGTGQMGAVKAVAPLIARIKDKSLLDLYTRKAARRIGIDLTILQREVQSARRAQHVPNE 469

Query: 452 -----------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR--------EAALLLTLI 492
                      +N     ++ P        + +G    +   R        E   + TL+
Sbjct: 470 DAYASRQRGYDRNYEREREQPPMNEARMREIERGNARSQHFHRIDDNVFITEMQFMATLV 529

Query: 493 NHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLPEEIHQRLCERG---FG 547
             P  +  E ++ L    +     Q ++  + +     +    P +    L + G     
Sbjct: 530 QIPRAVNAELFKALTVHCFSTPVFQTMFEAVEAAGGLPEPGTSPGQWLHALTKAGGPLLA 589

Query: 548 ELLKQLD-------------------RQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            ++ +L                    +Q   +       EA+    RQ   Q  A     
Sbjct: 590 PVITELAVMNLPLPQNMANGNAAQTGQQEPGSQSAQPMPEASAEQ-RQYANQLTASLIDT 648

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
             + R+   + +Q ++ T   +      L   + EV  +   ++SQ      FG  +G
Sbjct: 649 GYM-RRIGILRQQASRATNTHDQ---IRLFGAITEVERERKDLQSQI-----FGSAAG 697


>gi|194397481|ref|YP_002037703.1| DNA primase [Streptococcus pneumoniae G54]
 gi|194357148|gb|ACF55596.1| DNA primase [Streptococcus pneumoniae G54]
          Length = 586

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 147/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G +F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K+ +          I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKRSSGKASK----------IYLMEGFMDVIAAYRAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPXDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMEGISRPTPIT----MPITKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|167577171|ref|ZP_02370045.1| DNA primase [Burkholderia thailandensis TXDOH]
          Length = 625

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 174/657 (26%), Positives = 279/657 (42%), Gaps = 66/657 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--------------KIE 108
           +CF C   G  + FL    G +F E+VQ LA   G+ +P                     
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSPMRGAGGGSGEGYAPPA 116

Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY- 167
             + + T L  +++ A D++   L+         YL  RG+       F LGYAPD    
Sbjct: 117 ASKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQN 174

Query: 168 --SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
             +  +  R     +  ++      D + +A  YDRFR R++FPIR+ +GQVI FGGR L
Sbjct: 175 LEAAFDDYRHDSLVDAGLVIVSEKTDANGAARRYDRFRERIMFPIRNVKGQVIGFGGRVL 234

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
             GE  KYLNSPET LF+KG  LY  F A   ++             + ++VEGYMDV++
Sbjct: 235 DGGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVA 283

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           L Q G  N V++LGTA T   ++ L + +  +V  FDGD  G RAA +A++  L H    
Sbjct: 284 LAQLGFPNAVATLGTACTPVHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADN 343

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             + F+ L    DPDS++R +G  AF + +  ++PL   L    T  +  + P+ RA+  
Sbjct: 344 RTIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKAL 403

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              K  +  +    LR        DRLQ  F +         R                 
Sbjct: 404 FDAKPLLQALPANALRAQIMHMFADRLQIPFDEVAALAEVDARIA--------------- 448

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                       ++ +  E   L  L+ HP I      E A        + +L+  +   
Sbjct: 449 APARQAPARSERRRVTDSEKRALRNLVMHPRIAALLDDESAATLRALPRIGELFDEVIGH 508

Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577
            +          L + +        + E+ +++   D  VRD    +  ++A    +R+ 
Sbjct: 509 ALALGEGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDAAQEGLRER 568

Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +      QA  L  R+     +   + K+     +  E  +   L   L ++  ++
Sbjct: 569 ERIAGEELQAAVLKMRYDACCDRLNSLSKR--SAPSSEELAEIKDLHQNLADMKRRL 623


>gi|238853401|ref|ZP_04643780.1| DNA primase [Lactobacillus gasseri 202-4]
 gi|238833973|gb|EEQ26231.1| DNA primase [Lactobacillus gasseri 202-4]
          Length = 605

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 146/636 (22%), Positives = 268/636 (42%), Gaps = 46/636 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI ++   + I ++I QYV  +++       DY   CPFH EKTPSF  ++ K F
Sbjct: 4   RIPEQFIDEVRNSVDIVDVISQYVSLEKKGK-----DYLGLCPFHQEKTPSFTVSEGKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESV++ A +A + +P    +  K       +    
Sbjct: 59  FKCFGCGKGGNVFKFLMYQDHLTFPESVKKAAELAHLQMPEGYGEAAKPLSPLKKMY--- 115

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFS 179
             AT+F+ H L   +  +R   Y  +R +    ++ FK+GYAPD    L  +  ++K ++
Sbjct: 116 RQATEFYQHILLTTKVGERALEYARKRELTDDLLKHFKVGYAPDDDKILLTYLQQKKEYT 175

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238
           +  + E+GL I+  +    +DRFR+RL+FP+    G  + F GR +S  +++ KY+NSPE
Sbjct: 176 DNDLRESGLFIESQDG-QLFDRFRDRLMFPLGDESGYTVGFSGRRISNDKTIAKYMNSPE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F+K K L++F  A    +          S   +IL EGYMDV++  +AG+Q+ V+S+
Sbjct: 235 TKIFNKSKLLFHFAEAKKAAR----------SEKHLILYEGYMDVIAAYKAGIQSGVASM 284

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT  Q+ +L +++P I++ +DGD PG+ AA +A  L     + G  +  ++L    D
Sbjct: 285 GTSLTTEQVYMLRRITPNILVNYDGDPPGIHAAERATKLFG--QVQGFNLGIIVLPENLD 342

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +++ YGK  +   +  +L   D L +R     + +   E+          I  + D 
Sbjct: 343 PDEYVKKYGKEKYRAEVAGALSSTDFLLERLANQYNLHNDREKLTYITAAVQMIAGLNDP 402

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS-------QRLMQSSL 471
                Y   +  +     +          R  ++   H+     S       +       
Sbjct: 403 VAADLYLDKLARQTGVTRESLKVTFVRERRKLQRARNHQQAYQASTLMENIGETAEPKEA 462

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
             G  S+  +     LL   I+                + +    KL  F          
Sbjct: 463 QAGTDSETRNPALDRLLYLFIHSDEARDYLLSR--QFLFPDERYAKLAEFWLKYHQTHDE 520

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              +     + E        +L   + +  + +   + +  ++    +           +
Sbjct: 521 AEVKGFIDFIPE--------ELQGIIINMEMITMPPDYSKRELDDQLRALEKSK-----I 567

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             Q  ++  Q+ +   K +      +   +  +  +
Sbjct: 568 DEQLNDLLNQLKEAQRKQDNSLELEIAQKVIALRRK 603


>gi|116629752|ref|YP_814924.1| DNA primase [Lactobacillus gasseri ATCC 33323]
 gi|311110606|ref|ZP_07712003.1| DNA primase [Lactobacillus gasseri MV-22]
 gi|116095334|gb|ABJ60486.1| DNA primase [Lactobacillus gasseri ATCC 33323]
 gi|311065760|gb|EFQ46100.1| DNA primase [Lactobacillus gasseri MV-22]
          Length = 606

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 146/636 (22%), Positives = 268/636 (42%), Gaps = 46/636 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI ++   + I ++I QYV  +++       DY   CPFH EKTPSF  ++ K F
Sbjct: 5   RIPEQFIDEVRNSVDIVDVISQYVSLEKKGK-----DYLGLCPFHQEKTPSFTVSEGKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+   FL      +F ESV++ A +A + +P    +  K       +    
Sbjct: 60  FKCFGCGKGGNVFKFLMYQDHLTFPESVKKAAELAHLQMPEGYGEAAKPLSPLKKMY--- 116

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFS 179
             AT+F+ H L   +  +R   Y  +R +    ++ FK+GYAPD    L  +  ++K ++
Sbjct: 117 RQATEFYQHILLTTKVGERALEYARKRELTDDLLKHFKVGYAPDDDKILLTYLQQKKEYT 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238
           +  + E+GL I+  +    +DRFR+RL+FP+    G  + F GR +S  +++ KY+NSPE
Sbjct: 177 DNDLRESGLFIESQDG-QLFDRFRDRLMFPLGDESGYTVGFSGRRISNDKTIAKYMNSPE 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F+K K L++F  A    +          S   +IL EGYMDV++  +AG+Q+ V+S+
Sbjct: 236 TKIFNKSKLLFHFAEAKKAAR----------SEKHLILYEGYMDVIAAYKAGIQSGVASM 285

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT  Q+ +L +++P I++ +DGD PG+ AA +A  L     + G  +  ++L    D
Sbjct: 286 GTSLTTEQVYMLRRITPNILVNYDGDPPGIHAAERATKLFG--QVQGFNLGIIVLPENLD 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +++ YGK  +   +  +L   D L +R     + +   E+          I  + D 
Sbjct: 344 PDEYVKKYGKEKYRAEVAGALSSTDFLLERLANQYNLHNDREKLTYITAAVQMIAGLNDP 403

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS-------QRLMQSSL 471
                Y   +  +     +          R  ++   H+     S       +       
Sbjct: 404 VAADLYLDKLARQTGVTRESLKVTFVRERRKLQRARNHQQAYQASTLMENIGETAEPKEA 463

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
             G  S+  +     LL   I+                + +    KL  F          
Sbjct: 464 QAGTDSETRNPALDRLLYLFIHSDEARDYLLSR--QFLFPDERYAKLAEFWLKYHQTHDE 521

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              +     + E        +L   + +  + +   + +  ++    +           +
Sbjct: 522 AEVKGFIDFIPE--------ELQGIIINMEMITMPPDYSKRELDDQLRALEKSK-----I 568

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             Q  ++  Q+ +   K +      +   +  +  +
Sbjct: 569 DEQLNDLLNQLKEAQRKQDNSLELEIAQKVIALRRK 604


>gi|307709166|ref|ZP_07645625.1| DNA primase [Streptococcus mitis SK564]
 gi|307620112|gb|EFN99229.1| DNA primase [Streptococcus mitis SK564]
          Length = 586

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 148/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G  F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVPFMEAVQILGQRVGIEMEKPLYSEQKPASPHQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F++G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFRIGLAPPERNYLYQRLSGQYRD-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
            +++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 177 FLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  + +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGEMPVQIISMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSITA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLVSFDYAQIEQIINESRQAQRQNRMEGISRPTPIT----MPVTKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +D  E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFSFDTPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEMSPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|256847130|ref|ZP_05552576.1| DNA primase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715794|gb|EEU30769.1| DNA primase [Lactobacillus coleohominis 101-4-CHN]
          Length = 627

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 151/652 (23%), Positives = 277/652 (42%), Gaps = 47/652 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +   + I ++I Q V   ++  N         CPFH + TPSF  N+ K F
Sbjct: 3   RIPNELIDQIRDSVNIVDVISQDVQLKKQGKNL-----MGHCPFHRDDTPSFAVNEQKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118
           +YCFSCH  G+   FL  L   SF ++V+++A ++ + LP     +         +  L 
Sbjct: 58  FYCFSCHRSGNVFGFLQQLHNLSFPDAVRQVAEMSNITLPTQYVSENHQSVDNSPKGQLT 117

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS--LREHLRQ 175
           +L + A   +HH L      ++  +YL +RG+    I+ F LGYA +      L E+ ++
Sbjct: 118 KLHDQAAKLYHHLLVNTEAGEKALHYLTKRGVSRKLIDQFDLGYAVEQSDEEVLLEYAQK 177

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG---ESVK 232
           +    + + ++GL  +       +DRF  R+++PI++  G VIAF GR L+        K
Sbjct: 178 QQIDYQLLRQSGLFTEDQQG-NLHDRFHGRIMYPIKNENGHVIAFSGRILAPKATQNEPK 236

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           Y+NSPET +F+K + L+N   A    +           S  + L EG+MDV++    GV+
Sbjct: 237 YMNSPETPIFNKRRTLFNLDLAKKGAR----------QSGSLTLFEGFMDVIAAFGVGVK 286

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           N ++S+GT LTE Q++++ +++ ++ +C+DGDDPG  A  +A+ +      P   V  + 
Sbjct: 287 NGIASMGTNLTEEQIQIIQRITSQVNICYDGDDPGQNAINRAVQMFTD-NAPRLGVKIIQ 345

Query: 353 LSRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           L  G DPD +++ YG   F   L   +   V+   K      +    DE           
Sbjct: 346 LPAGIDPDEYVQKYGGIKFSDYLSQNTENSVEFHLKYLQRGLNLKNQDELMGYLNAALQV 405

Query: 412 INHIKDQKLRYYYSQAIRDRLQQ---LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           I  + +   +  Y Q +  +           + +     R  +       Q  P +   +
Sbjct: 406 IAGVSEPVAQDLYLQKLATKFGLDKTSLVNQLAKIQPPSRPAQSYQFSNRQSRPDRNEAR 465

Query: 469 SSLVKGKLSKKPSL-----REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
            S    +++ +P L      E  LL   +    + +  + +     + +   Q+L+  + 
Sbjct: 466 RSQPSVQMTTQPLLSKLQSAEQRLLKYYVLDEGVRKRLHGQ-EGFSFADVAYQQLYQKIT 524

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
             FV+   F    +  R+      ++L Q+     D  +                   + 
Sbjct: 525 EYFVDHTEFSTAAMLDRIDNPEQQQILTQMAELSIDDNIS-----------DDAVNDCIR 573

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +      L +Q       + +     + E T  L + L  ++ Q  Q++++E
Sbjct: 574 VIINEAPLDQQIAAKRAALDEAAMMNDQELTTKLATELVNLYQQQQQMKTEE 625


>gi|75909994|ref|YP_324290.1| DNA primase [Anabaena variabilis ATCC 29413]
 gi|75703719|gb|ABA23395.1| DNA primase [Anabaena variabilis ATCC 29413]
          Length = 640

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 164/655 (25%), Positives = 286/655 (43%), Gaps = 45/655 (6%)

Query: 1   MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           M  P    D I ++     I +++ +YV   +R       D+   CPFHDEK+PSF  + 
Sbjct: 1   MQIPRLHPDTIDEVKHRADIVDVVSEYVVLRKRGK-----DFVGLCPFHDEKSPSFTVSQ 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKI 113
           +K  YYCF C   G+ + FL  L   SF + V  LA    VP+    P    +++++  +
Sbjct: 56  TKQMYYCFGCQAGGNSIKFLMELGKRSFADVVLDLARRYQVPVQTLEPEQRQELQRQISL 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH 172
           +  L  ++  A  F+ H+L+ ++ +R   Y   +R      I+ F LGYAP    +L  +
Sbjct: 116 REQLYEVLASAASFYQHALRQSQGQRAMQYLRSDRQFKEATIQQFGLGYAPAGWETLHRY 175

Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
            +  K +    + +AGL+      A  YD FR+RL+ PIR  +G+VI FGGRTL   E  
Sbjct: 176 LVEDKHYPVHLVEKAGLIKPRKEGAGYYDVFRDRLMIPIRDIQGRVIGFGGRTL-TDEQP 234

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF+KGK L+    A   +          + S   ++VEGY D ++L  AG+
Sbjct: 235 KYLNSPETELFNKGKTLFALDQAKTGI----------SQSDQAVVVEGYFDAIALHAAGI 284

Query: 292 QNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348
            N V+SLGTAL+  Q+RL+ + +   ++VL FD D  G  AA +AI ++         ++
Sbjct: 285 NNAVASLGTALSLEQVRLILRYTDSKQLVLNFDADKAGTNAAERAIGEIADLAYKGEVQL 344

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
             + +  G+D D ++R +    + +L+  +   ++   ++  ++R      +  ++    
Sbjct: 345 KILNIPDGKDADEYLRSHTPADYGQLLANAPLWLNWQIQQIIKDRDLKQAPDFQQVTQQF 404

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              + +I +   R YY     + L     + I                   K  S R  +
Sbjct: 405 VKLLKNIVNSDTRNYYVSYCAEILSLGDTRLIPLRVENLLTQITPTTAAYSKPLSTRTNR 464

Query: 469 SSLVKGKLSKKPS-------LREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLW 519
           S  +    +           L EA LL   ++ P   +   +EL    + +  +  + LW
Sbjct: 465 SLSLVPSPNSPLKGDRSLLELAEALLLRIYLHCPEQRRVIIEELEARSLEFSLSHHRFLW 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             +     EQ      ++  RL +      L +    +      +  ++  I+   Q  Q
Sbjct: 525 QQILECTGEQV-----DLVSRLQDIYLE--LAEELGVISHLFHLNEKSKKEIMRTPQVVQ 577

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            A+A  +R     ++     +   +     E EK        +   I++ +++ Q
Sbjct: 578 AAIACMERVLT-EKRYRHFLELWQETDPDTEPEKWQSYYQAFYTEKIKLQELDRQ 631


>gi|315127801|ref|YP_004069804.1| DNA primase [Pseudoalteromonas sp. SM9913]
 gi|315016315|gb|ADT69653.1| DNA primase [Pseudoalteromonas sp. SM9913]
          Length = 583

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 160/629 (25%), Positives = 281/629 (44%), Gaps = 56/629 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR+FI DLL    I +LI   V   +        DY ACCPFH+EK+PSF  +  K F
Sbjct: 4   KIPRNFIDDLLARTDIVDLIDSKVGLKKAGK-----DYQACCPFHNEKSPSFTVSQDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118
           Y+CF C   G+ +SF+       F+++++ LA++  + +P         E+    +    
Sbjct: 59  YHCFGCGANGNAISFVMEYDKLEFVDAIEELASLLNLDVPREQGSSNGPERTAAQKRSDY 118

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L+  A  F+ H LK ++  + +  Y+  RG+    ++ F +GYAP     L + L +  
Sbjct: 119 DLMLHAARFYQHQLKHHSNSEAVIDYVKGRGLSGATVKKFMIGYAPSEWEGLCQQLGRNQ 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
             +E+++E  L  +       +D FR+RL+FPIR  RG+VIAFGGR +   +  KYLNSP
Sbjct: 179 EQKEQLVELKLASEKTPG-KQFDFFRDRLMFPIRDKRGRVIAFGGRVMQADQGPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHKG  LY  + A    +K             +++VEGYMDV++L + G++  V++
Sbjct: 238 ETRIFHKGFELYGLYEAKQAHKKL----------DHVLIVEGYMDVVALAEQGIEYAVAA 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA T   +  L++ + +++ C+DGD  G  AA++A++  L +L  G  ++FV L  GE
Sbjct: 288 LGTATTSEHMHTLFRTTDKVICCYDGDRAGKDAAWRALENALPYLNDGKALHFVFLPDGE 347

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS ++  GK AFE+ +  +     +L+ + ++         +A+L       I  I  
Sbjct: 348 DPDSLVQQEGKVAFEQRLENADDFTKVLFNKLSKEIDLTLDSGKAKLLSAALPLIEKIPS 407

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                +Y + I ++L +L  +   + + + +  K+      +   +              
Sbjct: 408 ----EFYQENILEQLGRLIGRTREQLNNHLKTPKQQQAIERKFKITPM------------ 451

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                     +  LI HP + +     L D+   N     L   L    +++      +I
Sbjct: 452 -------RQAIGILIQHPNLAKSVP-YLPDLAQMNIAGIGLLLRLQHQALQKDGITTAQI 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +        E L +L                   +  +   Q    +   + L+ + E 
Sbjct: 504 LESFRGTDDYEPLTKLATWQHQIN----------EERLETVFQNTFKFIEDQCLNYRLET 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHI 626
           +   I   T    +++      ++  +  
Sbjct: 554 LL--IKDKTQGLNSDERLECHLLMTALKA 580


>gi|223936512|ref|ZP_03628423.1| DNA primase [bacterium Ellin514]
 gi|223894676|gb|EEF61126.1| DNA primase [bacterium Ellin514]
          Length = 605

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 159/630 (25%), Positives = 275/630 (43%), Gaps = 46/630 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           + +   + +     I ++IG Y+   R   N     + A CPFH EK+PSF+ N  K  +
Sbjct: 5   FSQATREQVRSASDIVDVIGSYLPLKRAGAN-----FVALCPFHKEKSPSFNVNPHKQIF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIRLI 121
           +CF CH  GD  +F+       F ++V+RLA  A +PL + +   +++ +  +  L+++ 
Sbjct: 60  HCFGCHKGGDVFTFVKEYENIPFPDAVKRLAERAKIPLEMDNNPAQQQSRHLKDVLLQIH 119

Query: 122 EVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           E  T  +  +L   A  +    YL +RG+   AI++F+LGYAPD         R KGF  
Sbjct: 120 EQITQRWQSALANEAAGQIARDYLVQRGVTEEAIKLFRLGYAPDVWEDTVNWSRSKGFDP 179

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
             + ++GL++  + S   YDRFR RLIFPI   +G+VI F GR LS  +   KY+NSPET
Sbjct: 180 VVMEQSGLILRKEGSDHYYDRFRGRLIFPICDEQGRVIGFSGRVLSGDQKTAKYVNSPET 239

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGK  +    +   L            +   I+ EG +D+++   AGVQN+V+  G
Sbjct: 240 PIFTKGKVFFGLDKSKRAL----------LEAQSAIVCEGQLDLIACYMAGVQNMVAPQG 289

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALT    R+L + +  +VLCFD D+ G  AA +++D     L  G  +   ++    DP
Sbjct: 290 TALTADHARILKRYAEEVVLCFDSDNAGQNAAVRSLD---SLLASGLAIRVAVVPAPHDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DSFI+ YG  AF++L+ ++    D    R  E     +   R  +   +   +    +  
Sbjct: 347 DSFIKEYGGEAFKELVKKASGFFDYYLNRLCETNDVASDKGRLIILQEMAEAVYKTGNVV 406

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           L   Y+Q    RL    +    E     R           K  +   ++ ++        
Sbjct: 407 LIDTYAQKTAFRLGVPPEAVRAEFRKASR----------SKNATPLEVEEAIEIKPSKVP 456

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +  E   L  +      +   +  L      +  ++++     +   +           
Sbjct: 457 LNTPEHWFLKLIFLQEEGMDWIHAHLDPNWIQHLTVRQIAVMRLAVHAQG---------- 506

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +G    L   + +   + +  A++E   +         + L  R + + RQ   + 
Sbjct: 507 --TWQGVATFLNDCESEEMRSLITEASSEERPIPNPTQQMNDIVLRLRNQFIERQMAVLA 564

Query: 600 KQIAQVTAKGEAEKTAIL--ISILHEVHIQ 627
           ++  +    G+ E+ AIL     L ++  Q
Sbjct: 565 QESGK-PGLGDEERLAILVQQQKLRQLKRQ 593


>gi|298345357|ref|YP_003718044.1| putative DNA primase [Mobiluncus curtisii ATCC 43063]
 gi|304390912|ref|ZP_07372864.1| DNA primase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|298235418|gb|ADI66550.1| possible DNA primase [Mobiluncus curtisii ATCC 43063]
 gi|304325795|gb|EFL93041.1| DNA primase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 692

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 146/708 (20%), Positives = 260/708 (36%), Gaps = 101/708 (14%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            +  + ++ +   IPI +++  YV   R+ +          CPFHDEKT SF     +  
Sbjct: 4   KFDPEDLQKVRD-IPIESVVSDYVSLQRKGS-----SLLGLCPFHDEKTASFSVTPVRNM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           ++CF C   GD + F+  + G +F E+V+ LAA AG+ +  V+     KE+     +  L
Sbjct: 58  WHCFGCSQGGDTIDFVQLIEGLTFPEAVEFLAARAGITMHYVEGAAITKERVEPGTRQRL 117

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +    VA DFF   L +   +R   +++ R   S     F +GYAP    +L ++LR KG
Sbjct: 118 LECNRVAQDFFVSQLVSPEAQRARDFVEGRAFTSQDAAHFGMGYAPPGWNNLTDYLRSKG 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235
           F++++I+  GL          YD FR+R+++PI+   G V+ FGGR L   +    KY+N
Sbjct: 178 FTDQEIVTVGLGK--PGQRGIYDVFRDRVMWPIKDVTGAVLGFGGRRLDDSDPQVPKYIN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +PE+ ++HK   LY    A   + K  R           ++VEGY DV++   +G+   V
Sbjct: 236 TPESPIYHKSSVLYGLDLARPNIGKERR----------CVIVEGYTDVMAAHLSGITTAV 285

Query: 296 SSLGTALTEYQLRLLWKLSP--------------------RIVLCFDGDDPGLRAAYKAI 335
           ++ GTA T+   + + +                        ++  FDGD  G  AA KA 
Sbjct: 286 ATCGTAFTDEHAKQIRRFIGTSADSASSLKLPGGLPPRGGEVIFTFDGDAAGQAAALKAF 345

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
                           +   G DP       G  A   LI    PL D + K        
Sbjct: 346 RTDQDFASQ---AFVAVADDGLDPCDLRMQRGPGAVRDLIEGRKPLFDFVLKTIISKYDL 402

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------ 449
           ++P  R E        +  I+D+ LR  Y + +   L    +      +   R       
Sbjct: 403 DSPAARIEAMRATAPVLAEIRDKALRTEYVKQVSGWLGVNVRDTWYTVNEVWRRIRSQQR 462

Query: 450 --------------------------WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                                        N    D  G  Q + Q+ L     +      
Sbjct: 463 ASSASSSQPGGLGGPGNAAGGSEKSANLGNLTGSDASGSPQVIPQTRLDPAVNTDPVWRV 522

Query: 484 EAALLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQ------------- 529
           E  +L+  +  P    +  +  L    +    L+ ++  + +                  
Sbjct: 523 ERDVLIAALQFPGFAAQTAFDTLDPQSFTQPTLRAIFEVIAAVGGAGEYRRLAEVAQAAG 582

Query: 530 ----KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQALA 583
                          +  +    L+  L   V          ++        + + Q   
Sbjct: 583 EPHPGNVALNRWAAAVKAQAGSVLVGALTNLVTRPAPLYEANQSAEETRIAAESWVQNAV 642

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                + L+ Q   ++ Q+ ++ +   + + A +   L  +  ++ ++
Sbjct: 643 ESMERKGLNAQIASLKAQLRRLDS--NSPEKAEVFGKLINLENRMREL 688


>gi|262282857|ref|ZP_06060624.1| DNA primase [Streptococcus sp. 2_1_36FAA]
 gi|262261109|gb|EEY79808.1| DNA primase [Streptococcus sp. 2_1_36FAA]
          Length = 601

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 144/635 (22%), Positives = 259/635 (40%), Gaps = 51/635 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I D+   + I  +IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISDIKNSVNIVEVIGEVVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+E+VQ +A  +G+ L     D    K++     L  +
Sbjct: 65  HCFGCGKSGDVFKFIEEYRGVSFMEAVQIIAERSGIQLAVDKNDLSQPKRQHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      ++   YL +RG+    I+ F++G AP     L + +  K   
Sbjct: 125 HTEAAKFYHAVLMTTKMGEKARSYLYKRGLTDEIIKHFQIGLAPSEGNYLYQSMVGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESVKYL 234
              +           S   YD F+NR++FP+ +  GQV+AF GR   +         KY 
Sbjct: 185 ATIMNSGLFN--LAESNLVYDAFQNRIMFPLANDNGQVVAFSGRIWKESPQTDGHQAKYK 242

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N 
Sbjct: 243 NSRSTAIFNKSYELYHLDKAKPTIKK----------SHEVYLMEGFMDVIAAYRAGIENA 292

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   ++ L K   +++L +DGD  G  A  KA+D +         V  V + 
Sbjct: 293 VASMGTALTHEHVQHLSKYCKKVILSYDGDKAGQAATVKALDEL-----KDLAVEIVSIP 347

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD F++       + L+ ++         R  +  +      + E    +   I  
Sbjct: 348 DQMDPDEFVQKNSPEELQHLLTKTRISDVEFLIRYLKPENTENLQAQIEFVEKMAPIIAQ 407

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                 +  Y   + + L     + + +     R   + ++        Q   Q++L   
Sbjct: 408 TSSITAQNSYIYMLAELLPDFDYQQVEQAVNNSRLSNRKSQQEQVY--QQPHFQTNLPLS 465

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K   +    E  LL  +I +P +L +  +   D ++   ELQ L+  L            
Sbjct: 466 KQVSRLVKAENHLLNRMIEYPIVLNDY-RLREDFQFATPELQILYQILCE---------- 514

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
              +  +  +   E    + +           +E    ++ +     +   +   LL ++
Sbjct: 515 ---NGEVTSQDLSEQSDGVQQAWYRILEEDLPSEIADNELAE-----VESIRDKELLRKE 566

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            + I K++ + +  G+ +     +  L     ++ 
Sbjct: 567 NQIIGKKVREASHNGDVDTAIEELERLIAQKRRME 601


>gi|85711762|ref|ZP_01042818.1| DNA primase [Idiomarina baltica OS145]
 gi|85694377|gb|EAQ32319.1| DNA primase [Idiomarina baltica OS145]
          Length = 581

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 176/628 (28%), Positives = 295/628 (46%), Gaps = 62/628 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I  ++   V   +   N       ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPKSFIHDLLERADIVEVVDSRVPLKKAGKNHQ-----ACCPFHNEKTPSFTVSADKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ----TDLI 118
           +CF C   G+ + F+    G +F ++V+ LA+  GV +P  +    +K+  Q     +  
Sbjct: 60  HCFGCGAHGNAIDFIMEFDGLNFPDAVEELASSLGVQVPREEGHDPQKQHQQQAQLKNDT 119

Query: 119 RLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L+   T FF H LK+    +++  YL +RG+    ++ F++GYAPD+  SL   +  + 
Sbjct: 120 ELMAQCTRFFQHQLKHHANSEKVITYLKQRGLSGDIVKRFQIGYAPDAWDSLLTTMGVEP 179

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            + +++I+  L+   D     +D FR+R++FPI   RG+V+ FGGR +   +  KYLNSP
Sbjct: 180 RARQQLIDLKLVNVNDQGRK-FDFFRDRVMFPIHDRRGRVVGFGGRVI-DSDGPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LFHKG+ LY F+     L++             I +VEGYMDV++L QAG+   V+S
Sbjct: 238 ETRLFHKGQELYGFWNMQQRLRRP----------EQICIVEGYMDVVALAQAGIDYAVAS 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA T  QL+ L++ S R+V C+DGD  G  AA++A++  L  L  G  ++F+ L  GE
Sbjct: 288 LGTATTTEQLQRLFRTSNRVVCCYDGDRAGRDAAWRALENALPLLKDGIDLSFLFLPEGE 347

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS ++  GK  FE+ + ++   VD  ++  +E+   NT   R+ L    K  I  I  
Sbjct: 348 DPDSVVQSSGKEGFERYLNQAKSFVDYFFEHLSEDVDVNTESGRSALLSEAKPRIERIAS 407

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R    Q +   L++   +                  R    P QR  +   VK    
Sbjct: 408 DFYRESLMQKLAQLLRRETSQL----------------ERYVDTPQQRKAKPDAVKMTPL 451

Query: 478 KKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                     +  ++ +P + +E     EL +++        L+  L     E +     
Sbjct: 452 -------RRAVALIVQYPQLAKEVPVKAELGELKLPG---MDLFIALHQQCNE-RDMTTA 500

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ +   +  + + L++L                      +   + + +Y   + + ++ 
Sbjct: 501 QVLEYWRDTPYQKALEKLAVWQHGLD----------EHNMEQEFKDIFVYLIDQYVEQRA 550

Query: 596 EEIEKQIAQVT-AKGEAEKTAILISILH 622
           +E+ K+  Q    K E ++  +L+  L 
Sbjct: 551 DELLKKGQQTPLNKAEKQEYLMLVKHLR 578


>gi|152978400|ref|YP_001344029.1| DNA primase [Actinobacillus succinogenes 130Z]
 gi|150840123|gb|ABR74094.1| DNA primase [Actinobacillus succinogenes 130Z]
          Length = 587

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 171/617 (27%), Positives = 291/617 (47%), Gaps = 52/617 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PRDFI D++    I +++G  V   +  TN    +Y ACCPFH EKTPSF  + +K FY
Sbjct: 5   IPRDFINDIVAQADIVDVVGSRVKLKKAGTN----NYQACCPFHHEKTPSFTVSKNKQFY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------KIQTD 116
           +CF C   G+ L+FL       F+E+V+ LA + G+ +P       K        K + D
Sbjct: 61  HCFGCGAHGNALNFLMEYDKLEFVEAVEELAGMLGLDVPREQYAERKNSKTSVSFKTKRD 120

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L++   + + + L  +   +   YL +RG+    ++ F +GY PDS   +  +   K
Sbjct: 121 LYELMQNIAEQYQNQLTASIPAQA--YLQQRGLSEDVVKKFGIGYVPDSFDFVLRNFG-K 177

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              E++ + A  ++  +     YD FR+R++FPIR  RG+VIAFGGR +    + KYLNS
Sbjct: 178 TKEEQERLFALGMLKRNERGALYDAFRHRIMFPIRDRRGRVIAFGGRVM-GDGTPKYLNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET+ +HKG+ LY  + AL              S   +++VEGYMDV +L Q GV   V+
Sbjct: 237 PETVTYHKGRELYGLYEALQA----------NESPEMLVVVEGYMDVAALAQFGVDYAVA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGTA T  Q++L+++ + +++ C+DGD  G  AA++A++  L +L  G ++ F+ L   
Sbjct: 287 SLGTATTPEQIQLVFRATEQVICCYDGDRAGRAAAWRALENALPYLEDGRQLKFIFLPEK 346

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD++IR YGK  FE  I ++  L D L+    +    +T + +++L       IN + 
Sbjct: 347 EDPDTYIRQYGKAGFESYIQKAQTLHDFLFDHLLQQVDLSTKEGKSKLAALAVPLINRVA 406

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              LR Y    +  +L  L    I +    G   +K+A  +  +     +          
Sbjct: 407 GDMLRVYLQNTLALKLGILDPVQIEKLFAKGGQPEKSAVQKIPEMKRTPM---------- 456

Query: 477 SKKPSLREAALLLTLINHPAI--LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                     L+  L+ +P +  L        +++  +     L   L +   E      
Sbjct: 457 --------RVLIALLLQNPELAQLPYTLDAFKELK-TDVNGLDLLENLTALCRENVGITM 507

Query: 535 EEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEA----NIVDVRQGYQQALALYKR 587
            +I +      + + L+ L   D  +    +     +           Q  +  +A  ++
Sbjct: 508 GQILEYFRGTNYAKPLEILSVWDHLIESDNITVTFIDTLAFFANQLQSQRIEDLIAKDRQ 567

Query: 588 FRLLSRQKEEIEKQIAQ 604
             L   +K+E+ + +++
Sbjct: 568 LGLDLDEKQELAQLLSR 584


>gi|315924366|ref|ZP_07920588.1| DNA primase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622245|gb|EFV02204.1| DNA primase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 592

 Score =  343 bits (879), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 165/635 (25%), Positives = 286/635 (45%), Gaps = 49/635 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            Y  + I+ ++    I +++ QYV   +         Y  CCPFH+E+TPSF  +  K  
Sbjct: 3   KYSEEIIQRVIEANDIIDVVSQYVQLKKSG-----HSYMGCCPFHNERTPSFSVSQDKQL 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C V G+ +SF+      SF E++Q LA  A + LP    + + K + +  L  L 
Sbjct: 58  YHCFGCGVGGNVISFVMDKENMSFPEAIQYLAERANIHLPKSTSEDDAKYQRKETLYELN 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            V  + ++  LK+  D     YL ERGID   I+ F LGYA D      ++L  + F  +
Sbjct: 118 RVLANHYYTLLKHQPDA--LAYLKERGIDIRTIKTFGLGYAADQWREACQYLTARQFKID 175

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETI 240
            I+++G+ I  D     YDRFRNRL+ PI+++R ++I FGGR LS  E   KYLNSPE++
Sbjct: 176 DIVDSGVEIKNDRG-RFYDRFRNRLMIPIQNARDKIIGFGGRILSNEEHGPKYLNSPESL 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F KG  L+N   A   +             + +++VEGYMDV++L Q G++N V++LGT
Sbjct: 235 IFSKGTELFNLNRAKKNI-----------VDNQLVVVEGYMDVIALYQRGIKNTVAALGT 283

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T +  +LL +    IVLCFDGD  G  A  KAI +         ++  V L+  +DPD
Sbjct: 284 AFTSHHAKLLSRYVDEIVLCFDGDQAGENATNKAIAI---LKNSPLKIKVVRLNAEDDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S+IR  G  AF + + E+   ++       ++    T D+R          I   +    
Sbjct: 341 SYIRRNGVDAFRQQVREAQTAIEYQLTCLKKDNPLKTNDDRLTYVSQAVPIIREARSDIE 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           + ++S+ +        +           Y +       +K  +++       K K  K  
Sbjct: 401 KNFFSKLVAQSTGISAKMIYNAAIKNIGYSEDQIMPAFKKYLAEQ-------KKKTPKAV 453

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  +++ L+N    +     +L +  + +   ++ +  +   + E+K      +   
Sbjct: 454 LQAEKNIIIGLLN--QTIPFNALDLTESHFSDAMFRQAFHEIKKCYQERKPMTGATVIAA 511

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L +    + L  L  +  +        EA+  +  +  +Q                 ++K
Sbjct: 512 LDQPEAQQALTALIMESSNG-------EASPKESIRVLKQYKDA--------AAMRALQK 556

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           ++  +       + A  ++ L E+  +   ++  E
Sbjct: 557 KLKTLDPS--DPEVARTLNALMELKKRKDSMQEVE 589


>gi|86606956|ref|YP_475719.1| DNA primase [Synechococcus sp. JA-3-3Ab]
 gi|86555498|gb|ABD00456.1| DNA primase [Synechococcus sp. JA-3-3Ab]
          Length = 631

 Score =  343 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 159/653 (24%), Positives = 284/653 (43%), Gaps = 45/653 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + P +FI+ +     I  ++ + V   ++  N     +   CPFH++  PSF  + SK  
Sbjct: 3   SLPPEFIQLVRQKADIVEVVAEKVVLRKQGKN-----FVGLCPFHNDHKPSFQVSPSKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y CF+C   GD + F+S + G SF E+V+ LA    VP P        E++   +  L+ 
Sbjct: 58  YKCFACGAGGDVIRFVSQIEGLSFAEAVRHLARRYHVPEPKESLSQDYERQLSHREKLLE 117

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGF 178
           ++ +A DF+ H+L++        YL  R +    ++ F++G+AP   +SL E+ + QK  
Sbjct: 118 ILALAADFYRHALRSQIGSAARQYLHSRHLSEETLQKFQIGFAPPGWHSLYEYLVNQKRQ 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             + + EAGLL      +  YDRFRNR++ PI   +G+VI F GR L   E  KYLNSPE
Sbjct: 178 PVKLLEEAGLLAPRQQGSGHYDRFRNRIMLPIFDLQGRVIGFAGRAL-GEEQPKYLNSPE 236

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF+KG+ +Y    A   + K          +  +++VEGY DV++L QAG+   V+++
Sbjct: 237 TELFNKGQVVYGLNFAREAIAK----------ADQVLVVEGYFDVIALHQAGIAYAVAAM 286

Query: 299 GTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVLLSR 355
           GTALT +Q++ L + +   R++L FD D  GL AA +AI+ +      G   +  + L  
Sbjct: 287 GTALTPHQVKTLLRYTQSKRLILNFDADRAGLNAAKRAIEAIEEQARRGEIELRILTLPA 346

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+D D F+R +  +AFE L+ ++   +D    +    R      +  +    L   +  +
Sbjct: 347 GKDADEFLRQHSVSAFEALLAQAPLWLDWQIDQVLAGRDLAQGADFQQAYQALVQLLAGL 406

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
              + R  Y+  + + L +   +   +     R   +  R    +           +   
Sbjct: 407 G-GQWRSLYTHKVAELLSRGNARLCRDLEEDLRRAVRQYRWSKPR----------QLAAP 455

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFL 533
              K    E+ LL   ++     +E  Q L   ++++     ++LW  +      Q    
Sbjct: 456 KGCKLLQSESHLLQIFLHFAEYRREIRQTLMERELQFSFRPHRELWQRILELLSAQPELE 515

Query: 534 P--EEIHQRL-----CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
              E +   L      +    E L  L     +  +        +       +  +   K
Sbjct: 516 DQGEGLLTALRTLCAQDEDLNERLSHLLWLDENTRVALMRPRLVVRAALANMELEIR-QK 574

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           R+R  ++  ++   +     A             +  +  Q+    + E ++E
Sbjct: 575 RYRYWTQLWDQAFSEGNTALAAQYQASIQQEYQAIQALQRQVQ--LNLEDLLE 625


>gi|91776675|ref|YP_546431.1| DNA primase [Methylobacillus flagellatus KT]
 gi|91710662|gb|ABE50590.1| DNA primase [Methylobacillus flagellatus KT]
          Length = 576

 Score =  343 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 172/608 (28%), Positives = 280/608 (46%), Gaps = 43/608 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI++LL  + I ++I + V   +   N     Y ACCPFH+EK+PSF  + +K FY
Sbjct: 2   IPDSFIQELLNRVDIVDVIDRSVPLKKAGAN-----YSACCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-PKIEKKEKIQTDLIRLI 121
           +CF C   G  + F+    G SF+E+V  LA   G+ +P    P+   + K+   L  ++
Sbjct: 57  HCFGCGAHGSAIGFVMEYQGISFVEAVHELAKSVGMIVPQESRPEDVVRAKVIPGLQEVM 116

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           + A D++   LK +   R   YL  RG+       F++GYAP    +L+           
Sbjct: 117 QQAADYYRAELKKS--PRAIEYLKGRGLSGQVAGRFQIGYAPAGWQNLQAVFAD---YRH 171

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPETI 240
           ++++   L+  +     YDRFR+R++FPI   +GQVI FGGR L       KYLNSPET 
Sbjct: 172 EVLQTAGLVIENEQGRCYDRFRDRIMFPIHGQKGQVIGFGGRVLESADAGAKYLNSPETP 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+ LY  F A   ++++ R           ++VEGYMDV++L Q G+   V++LGT
Sbjct: 232 LFQKGQELYGLFLARRAIREAGRA----------LVVEGYMDVVALAQYGIDYAVAALGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T   +  L + +  IV CFDGD  G  AA++A    L  L  G R++F+ L    DPD
Sbjct: 282 ATTPAHIAKLMRQTDEIVFCFDGDSAGRGAAWRAAMNALPVLKDGLRLSFLFLPAQHDPD 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S++R +GK AFE L+ +++PL   L +  + N    + +++ +     +  +  I+  +L
Sbjct: 342 SYVREFGKQAFEDLMAQAMPLSQYLIQELSANNRLQSQEDKVQFLNEAEPILKQIQAPRL 401

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                + I +       +                  R  K P     Q+     +     
Sbjct: 402 ALLLRKRIAELADISSDEMR----------------RMVKLPETNRQQTRSAPKQARVTM 445

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           SL+    L+ ++  P ++QE  Q+   +    +E + +   +    +E     P  I   
Sbjct: 446 SLQRRFTLMAIMR-PHLVQEGDQQW--MTGSTDEDEMVRQ-VVKLALESPDAKPVAILHG 501

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L       LL  L R +      S   E     VR+  +      ++   + R KE+   
Sbjct: 502 LESVVNARLLPDLQRDL-HLLDESLDFELEFDGVRRQLKDMYLQRQKASAVDRLKEKNLS 560

Query: 601 QIAQVTAK 608
           Q+ +   +
Sbjct: 561 QLTEEERE 568


>gi|254431428|ref|ZP_05045131.1| DNA primase [Cyanobium sp. PCC 7001]
 gi|197625881|gb|EDY38440.1| DNA primase [Cyanobium sp. PCC 7001]
          Length = 706

 Score =  343 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 166/657 (25%), Positives = 287/657 (43%), Gaps = 46/657 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ +     I +++G++V   ++       ++   CPFHD+ +PS   + +K F
Sbjct: 7   RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDTSPSMTVSPAKQF 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           YYCFSC   G+ + FL  L   SF + V  LA    +P+  +D   +++ +     +  L
Sbjct: 62  YYCFSCGAGGNAIKFLMELQRQSFSDVVLELARKYQLPIETLDGPQQERLRRQLSRRDQL 121

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEM-FKLGYAPDSRYSLREHLRQ- 175
            R++ +A+ +F   L+         YL E+          F+LG+APD    L  HL Q 
Sbjct: 122 HRVLSLASGWFRSQLRAPEGAGALAYLREQRKLGEGTIEAFELGFAPDRWDGLLNHLGQV 181

Query: 176 KGFSEEKIIEAGLLIDGDNS-----ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
           +G   E ++EAGL +             YDRFR R++ PI+  +G+VI FGGR+L  GE 
Sbjct: 182 EGIGPEWLVEAGLAVPRKGQGGEGSQGYYDRFRGRVMVPIKDRQGRVIGFGGRSLDGGEP 241

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET +F KGK+L+    A + +++  R           ++VEGY DV++L  AG
Sbjct: 242 -KYLNSPETEVFEKGKHLFGLDRAASAIRRDDRA----------VVVEGYFDVIALHAAG 290

Query: 291 VQNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNR 347
           + N V+SLGTAL+  Q+  L +     R++L FD D  G+RAA +AI ++    L     
Sbjct: 291 ITNAVASLGTALSSQQITQLCRCCESRRLILNFDSDGAGVRAAQRAIGEVEQQALQGQLE 350

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
           +  + L  G+DPD F++ +G   +  L+ ++   +D   ++    +     D+  +    
Sbjct: 351 LRVLHLPAGKDPDEFLQQHGAGDYRALLDQAPQWLDWQIEQVLAGKDLARSDQFQQAVSG 410

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
           L   +  +    +R +Y Q + +RL     +   +     R   K  R   +    ++  
Sbjct: 411 LVALLGKLPQSAVRSHYLQQVAERLSGGQARLAIQLEDDLRQQVKGQRWHGRSQKWEQPG 470

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFS 524
           ++ L            EA +L   ++          EL       +     ++LW+ + +
Sbjct: 471 EAGLR--------ERAEAEVLRLYLHCGTYRAPIRAELRRHDLEDFALAHHRQLWAAISA 522

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQAL 582
              +       E   R  + G       L R + D  L   +T    +   +     Q L
Sbjct: 523 LEEDNLGAGRLEAVNRGLDPGHDLADLDLPRLLSDQLLVEESTLLTRLTPLIEPSELQQL 582

Query: 583 ALYKRFRLLSRQKEEIEKQ--IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            L +    L      +E+Q  + +     +A  +  L   L     ++ + E QEA 
Sbjct: 583 HLGQPLLQLRGALASLERQRSLKRCRHLLDAWSSQRL-ETLERCIARLLEGERQEAA 638


>gi|228476140|ref|ZP_04060848.1| DNA primase [Staphylococcus hominis SK119]
 gi|228269963|gb|EEK11443.1| DNA primase [Staphylococcus hominis SK119]
          Length = 602

 Score =  343 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 151/632 (23%), Positives = 272/632 (43%), Gaps = 35/632 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIEQSVINEIKEKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
             +CF C   G+   F+  +   SF+E+VQ L     + +     +    +       +I
Sbjct: 56  ICHCFGCKKGGNVFQFIQDIKDISFVEAVQELGERVNIKVDIGHSNHSTTQIASEDLKMI 115

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            + E+  +++ ++L K+   +    YL  RG     I+   +GYAP++ +   + L+QKG
Sbjct: 116 EMHELINEYYMYALMKSVEGEEALNYLVNRGFTEELIKSRGIGYAPNNAHFCHDFLKQKG 175

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           +  E   EAGLL   + + + YDRFR+R++FP+++++G+++ F GRT    +  KYLNSP
Sbjct: 176 YDIELAYEAGLLSRNEENFSYYDRFRDRIMFPLKNAQGRIVGFSGRT-YNNQEPKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +F K + LYN   A   ++K          +  ++L+EG+MDV+    AG++ VV+S
Sbjct: 235 ETPIFQKRRLLYNLDNARKSIRK----------NDEVMLLEGFMDVIKADYAGLKTVVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTAL+E  + +L KL+  I L FDGD  G  A  K  +     L  G  V  V L +  
Sbjct: 285 MGTALSEDHMTVLKKLTSNITLMFDGDFAGQEATLKTGE---HLLKHGLNVFVVQLPKNM 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +I  +GK  F + +        +   +       N           +   I+ ++ 
Sbjct: 342 DPDEYIVKFGKEKFIEFLNNEKKSFIIYKVQFYREEIENNDLAYERHFKEITENISFVRS 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGKL 476
             L+      + D         ++       +   +     +    S    Q+  +    
Sbjct: 402 SILKNKIVNDVADIFNIDANTIMSNVHQQPEFISYEEDYIGNTNDNSNSNTQNLNIVFTH 461

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             K    + ALL   +    +     ++L    + N   Q ++  L   + E  Y+   +
Sbjct: 462 LNKSEKAQRALLKHFMMDKDVFLNYNRQLEANDFTNKYFQSIFKALTDYYSENDYYSISD 521

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +   + ++   E + QLD    +   +            + Y   L   K         E
Sbjct: 522 LILYIEDKDIREAIIQLDDYELNREPYDLE--------IEEYISTLNENKYEDS----IE 569

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           E+  ++ +    G+ E     + ++ + + Q 
Sbjct: 570 ELNHKLKEALRIGDVESQKYYLQMIVDKNKQR 601


>gi|227496285|ref|ZP_03926581.1| possible DNA primase [Actinomyces urogenitalis DSM 15434]
 gi|226834210|gb|EEH66593.1| possible DNA primase [Actinomyces urogenitalis DSM 15434]
          Length = 668

 Score =  343 bits (878), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 144/681 (21%), Positives = 254/681 (37%), Gaps = 72/681 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ I+ +     I +++G++V           G     CPFHDEKTPSFH     G +
Sbjct: 5   IKREDIEAVRERAKIEDVVGEHVTLKSGG----VGSMKGLCPFHDEKTPSFHVRPQLGLW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE----KIQTDLI 118
           +CF C   GD +SF+  +   SF E+V+ LA   GV L   D   + +       +  L+
Sbjct: 61  HCFGCGEGGDVISFVEKINHLSFAEAVEYLAGRVGVQLRYEDSSGDVRRGVEPGTRQRLL 120

Query: 119 RLIEVATDFFHHSLKNARDKRLH--YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
               VA ++F   L  A         +L  RG D  A+  F +GYAP    +L  HLR K
Sbjct: 121 EANRVAEEWFRSQLSPANPAAASAGRFLYGRGFDDAALARFDVGYAPPGWDNLAGHLRSK 180

Query: 177 GFSEEKIIEA-GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKY 233
           GF+E +++ +      G      YDRFR+R+++PIR   G  + FGGR LS  +    KY
Sbjct: 181 GFTEAELVASGLCGQGGAGGGRVYDRFRDRIMWPIRDVTGATVGFGGRRLSDEDKTVPKY 240

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LN+PET ++HK + LY    A   +    R          +++VEGY DV++   +GV  
Sbjct: 241 LNTPETAIYHKSQVLYGLDLAKKDIASQHR----------VVVVEGYTDVMAAHLSGVTV 290

Query: 294 VVSSLGTALTEYQLRLLWK------------------LSPRIVLCFDGDDPGLRAAYKAI 335
            V++ GTA  E  +R++ +                      ++  FDGD  G +AA +A 
Sbjct: 291 AVATCGTAFGEDHVRIVRRLLGDAADPSVGVVMGNRVRGGEVIFTFDGDAAGQKAALRAY 350

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
                      +    +   G DP       G     +L+    PL + + +    N   
Sbjct: 351 GEDQHFAA---QTFVAVEPHGLDPCDLRLEEGNQGIPRLLERRKPLFEFVIRTCLANLDL 407

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK--N 453
           +T + R          +  I+D+ LR  Y++ +   +       +       R       
Sbjct: 408 DTAEGRVRGLRTAAPIVAGIRDRALRREYTRRLAGWVALPESDVLRAVQSAERRGPGAVQ 467

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYDN 512
           A                     ++ + +  E  +L T++  P          +    + N
Sbjct: 468 ASSGGSGDAVLGTDARRPALEPVTDQVTALERQVLATMVQQPMAAARAGADTIESAAFSN 527

Query: 513 NELQKLWSFLFSDFVEQKYFLP-------------------EEIHQRLC---ERGFGELL 550
              +  +  + +     +                           +++           L
Sbjct: 528 AVHRAAFEAIEAAGGVSRMQDEVTALTAGGKGLKEIERTAFAHWVEQVRLGATPEIDAAL 587

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
             L            + E +   +++  +  +    R   ++R+  E+  +  +++A  E
Sbjct: 588 TALAVVTLPVATRRGSQEIDPDALQRYARDVVTSLARMG-VNRRLTELRGRQRRMSA--E 644

Query: 611 AEKTAILISILHEVHIQIHQI 631
                 L   +  +  +  Q+
Sbjct: 645 DPGYRELFEEIVGLENKRMQL 665


>gi|281355397|ref|ZP_06241891.1| DNA primase [Victivallis vadensis ATCC BAA-548]
 gi|281318277|gb|EFB02297.1| DNA primase [Victivallis vadensis ATCC BAA-548]
          Length = 618

 Score =  343 bits (878), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 144/650 (22%), Positives = 260/650 (40%), Gaps = 59/650 (9%)

Query: 1   MNY--PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           MN+   +D I+D+     I  LIG +V   R  TN     Y   CPFH EKTPSFH + S
Sbjct: 1   MNFGVSKDIIEDIRARCDIVELIGTFVQLKRSGTNT----YKGLCPFHQEKTPSFHVDAS 56

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-----PKIEKKEKI 113
           +  ++CF C   GD   F        F++++  LA+  GV +P         +  ++   
Sbjct: 57  RQTFHCFGCGKGGDVFRFYMDKENVGFVDALHMLASRVGVVIPENSGGGDPGEGRRRANE 116

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L ++ E    FFH  L    +     YL  RGI     E FK+G  PD   +  ++ 
Sbjct: 117 RERLYQINEAFATFFHQVLVRNPNSPAAEYLRRRGIPPEVAERFKIGACPDEWTACLDYG 176

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-- 231
           R  GF++E+++ +G++     +   +D F+ RL F I + +G+V+ F  R+L        
Sbjct: 177 RSLGFTDEELVTSGIIRKKAETGRCFDHFKGRLTFAIENEQGRVVGFSCRSLEAKPLAGG 236

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KY+N+PET +F KG  LY    A              +  +  ++ EG +D ++  +AG+
Sbjct: 237 KYINTPETPIFKKGNLLYALPLARK----------MMSDRNMAVICEGQLDSIAFHRAGI 286

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           +  V+  GT+ TE Q R+L +   RI L  D D  G +A  + ++++L        +  V
Sbjct: 287 ECAVAPQGTSFTENQARILSRYCNRIYLALDSDSAGQKAILRDVEILLPMS---FDIKVV 343

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
            +  G+DPD      G  A ++ + +S+  + +L     +     +   R    + +   
Sbjct: 344 RIPGGKDPDELFAHGGAAALQQALDDSVSWLKVLCDSLPQRHDMGSAAGRGHAAVEVAGY 403

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN---------------ARH 456
           +N I +Q     Y +     L         E     R  ++N                  
Sbjct: 404 LNRITNQVELELYVRDAAMLLGVSEDALYAELRQVSRKARRNEEFSRGGPAAEPAYTPNT 463

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY--DNNE 514
            +   P  R     L   +     S     LL   +N     ++  + +        N  
Sbjct: 464 GEFIPPRPRSENRPLPGIQQEDPCSPALLTLLELAVNSETAARQIAELVPPEELPDSNPI 523

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
            + +   +      +   +P E+ + L E    E+ + L  +     + +A  E+     
Sbjct: 524 ARAVNLTVNLALNGEFEQVPAELSELLIEHPVPEISRILVSEFVCKDIPTAVEESAAE-- 581

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
                    L ++F+   ++   +  Q+   +     E+   L++ L  +
Sbjct: 582 ---------LRRQFKKEEQRL--LMLQMKNAST---PEERLALLTRLQSM 617


>gi|220907241|ref|YP_002482552.1| DNA primase [Cyanothece sp. PCC 7425]
 gi|219863852|gb|ACL44191.1| DNA primase [Cyanothece sp. PCC 7425]
          Length = 690

 Score =  343 bits (878), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 155/681 (22%), Positives = 279/681 (40%), Gaps = 72/681 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I+ +     I  ++ +YV   +        D+  CCPFH++K+PSF  + +K F
Sbjct: 5   RLHPDTIEQVRQATDIVEIVSEYVVLRKAGR-----DFSGCCPFHEDKSPSFSVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKIQTDL 117
           YYCF C   G+ + FL  +   SF E V  LA   GVP+          +++K  ++  L
Sbjct: 60  YYCFGCGAGGNAIKFLMEIGKRSFSEVVLELAQKYGVPVKTLQDTEKQDLQRKLSLREQL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLD-ERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             ++ +  +F+ H+L+  +      Y+   R +    I+ F++GYAP     L  +L ++
Sbjct: 120 YEVLALTCNFYQHALRQPQGYHALQYVQAARQLSEATIQEFQIGYAPAGWQVLYGYLVEQ 179

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
                +++E   LI        YDRFR+RLI PI   + +V+ FG RTL   E  KYLNS
Sbjct: 180 KQYPVELVEQAGLIVPRKGGGYYDRFRDRLIIPIHDLQSRVVGFGSRTL-TNEEPKYLNS 238

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F+KGK L+    A   + K          +   ++VEGY DV++L  AG++NVV+
Sbjct: 239 PETEVFNKGKILFGLDKARGAIAK----------ADQAVVVEGYFDVIALHAAGIKNVVA 288

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAA---YKAIDLVLCHLIPGNRVNFVLL 353
           ++GTAL++ Q+R L +      +  + D     A        ++         ++  + +
Sbjct: 289 AMGTALSQEQMRQLLRYCESKQIILNFDADKAGAKAAERAIGEIEDLAYRGEVQLRVLNI 348

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G+D D +++ Y    ++ LI ++   ++   +R    +     D+  ++   +   + 
Sbjct: 349 PNGKDADEYLKEYSPNDYQTLIDQAPLWLNWQIERALVGQDLRQADQFQQVIQKMVQLLG 408

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           ++ +  LR +Y       L Q   +   +     R   +  R   +    QR    +L +
Sbjct: 409 NLPNASLRTHYIHYCAGLLSQGDARLALQLEEALRSQVRGQRWHGRSQKWQRPADFTLRE 468

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQKLWSFLFSDFVEQKY 531
                     EA LL   ++ P   Q+ +  L+  ++ +  +  + LW  +     +   
Sbjct: 469 A--------AEAQLLRIYLHCPPYRQDIHNALSQRELEFSLSHHRFLWRQILVVEEQHTP 520

Query: 532 FLPE-------EIHQRLCERGFGELLKQL-------DRQVRDAGLWSATTEANI------ 571
              E       E+   L E      L+ L        +QV         T+ +I      
Sbjct: 521 PPDEQGQPPHPELAPGLAELDLITALQDLCTDFSQEMQQVFHLIQLDEKTQLDILRPALS 580

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQ-----------------IAQVTAKGEAEKT 614
           +       + +A  KR R L    E   +                  +    A+   E  
Sbjct: 581 IQAAAASLERIACEKRCRHLLELWETATQSAFSENSQKQVLSTYLKNMLDSEAEHIQELL 640

Query: 615 AILISILHEVHIQIHQIESQE 635
                 L E+  +I ++  QE
Sbjct: 641 QEEDHWLQELE-RIRKLYYQE 660


>gi|319892619|ref|YP_004149494.1| DNA primase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162315|gb|ADV05858.1| DNA primase [Staphylococcus pseudintermedius HKU10-03]
          Length = 595

 Score =  343 bits (878), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 153/637 (24%), Positives = 259/637 (40%), Gaps = 44/637 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P++ I+++     I +++ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIPQNTIEEIKQQSDILDIVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIR 119
             +CF C   G+   F+  +   SF E+VQ L     + + +               +I+
Sbjct: 56  ICHCFGCKKGGNVFQFIQEIENISFTEAVQHLGERVNIKVDIDETNDDMHIASDDLKMIQ 115

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + E    ++H+ LK     ++   YL ERG     I+  K+G+APDS +   + + +KG+
Sbjct: 116 MHEEILSYYHYLLKKTVEGEQALNYLYERGFTDDMIDARKIGFAPDSSHFATDFMEKKGY 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             +   EAG+L   D     YDRFRNR+IFP+ +++G+++ + GRT    +  KYLNSPE
Sbjct: 176 DLQLGYEAGILSRNDTDFNYYDRFRNRIIFPLANAQGRIVGYSGRT-YTEQEPKYLNSPE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + +F K K LYN   A   +++             IIL+EG+MDV+    AG++NVV+S+
Sbjct: 235 SPIFQKRKLLYNLSEARKSIRQK----------DEIILLEGFMDVIKADDAGLKNVVASM 284

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT L+   +  L KL   + L FDGD  G+ A  K        L     V  V L    D
Sbjct: 285 GTQLSNEHITFLKKLCSHVTLMFDGDFAGIEATMKTGQ---QLLQQQFNVYVVQLPSKMD 341

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I  YG   F   +            ++ ++   N      +           I   
Sbjct: 342 PDEYIMKYGAEKFNSFVNTEKKAFVSFKLQQHQHEIQNNDLAYEKYYHMFVEDAALISSH 401

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            LR    Q   +  +        E                    +Q +            
Sbjct: 402 ILRNKVVQNASELFKVSADSLNKEVESVHPQQHFEQAGPIPIQTTQWM---------QHN 452

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           K    E A+L   I    +    YQ++ +  + N   ++++  L   + +   F   E  
Sbjct: 453 KYEKAERAILKHFIMDKEVFLSFYQDIDETDFTNEYFKRIFITLREFYSKFDSFTMSEFV 512

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             +      E+L  L                   +    Y Q +  ++         E +
Sbjct: 513 TYIDHDILKEVLIYLWDY--------PLNREPYENEIADYIQVMTEHRYSES----IESL 560

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +++ + T  G+   +      +  V+    +++SQE
Sbjct: 561 HEKLREATRVGDIA-SQKYFLEMI-VNKNRARLKSQE 595


>gi|257898869|ref|ZP_05678522.1| DNA primase [Enterococcus faecium Com15]
 gi|257836781|gb|EEV61855.1| DNA primase [Enterococcus faecium Com15]
          Length = 627

 Score =  343 bits (878), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 153/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+ +     I  +IGQYV   +   N     Y   CPFH+E+TPSF   + K  
Sbjct: 18  RIPPEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 72

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           ++CF C   G+  +FL  L G SF E+V ++A    +PL          ++  E     L
Sbjct: 73  FHCFGCGKGGNVFTFLQELEGLSFPEAVIKVADFEQIPLEDQWRQRTVAVQNPESATGKL 132

Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I   E A + +HH  L     +    YL  RG+    IE F +G+AP+ R  L++  + +
Sbjct: 133 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 192

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231
            FS E +  +GL +   +     DRF  R++FP+R+ +GQ I F GR L+       +  
Sbjct: 193 SFSNELLERSGLFV-THDDGRLSDRFYQRVMFPLRNPQGQTIGFSGRWLAPEKGQEKDQP 251

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF+K + L+N   A + ++K          +  I+L EG+MDV++  QAG+
Sbjct: 252 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEILLFEGFMDVIAAWQAGI 301

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           +  ++S+GT+LT  Q++ + KL+  +V C+DGD+ G  A  + I+L+  +   G  V  V
Sbjct: 302 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSRLGLSV--V 359

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410
           ++    DPD ++R YG+ +F++L+      V     R  +       ++   E    L  
Sbjct: 360 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLENEKDKIEYLEELLV 419

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +     +  Y   +    Q   +    +     R  ++N +   +   +Q   Q +
Sbjct: 420 ELSRVVSPIEQDMYLSQLSTEFQVSRETIQKQLRELRRTNQQNRQEPQENQHAQTKRQET 479

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
           + K +   +    E  LL       ++     +   + ++ ++   +++    +   +  
Sbjct: 480 VRKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 537

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            F   E    L +     L+ +++             E++  ++     Q L        
Sbjct: 538 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 585

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           L+ +    ++   +    G  +    L   +  +  Q+ Q +
Sbjct: 586 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 627


>gi|257887738|ref|ZP_05667391.1| DNA primase [Enterococcus faecium 1,141,733]
 gi|257823792|gb|EEV50724.1| DNA primase [Enterococcus faecium 1,141,733]
          Length = 627

 Score =  343 bits (878), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 152/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+ +     I  +IGQYV   +   N     Y   CPFH+E+TPSF   + K  
Sbjct: 18  RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 72

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           ++CF C   G+  +FL  L G SF E+V ++A    +PL          ++  E     L
Sbjct: 73  FHCFGCGKGGNVFTFLQELEGLSFPEAVIKVADFEQIPLEDQWRQRTVAVQNPESATGKL 132

Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I   E A + +HH  L     +    YL  RG+    IE F +G+AP+ R  L++  + +
Sbjct: 133 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 192

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231
            FS E +  +GL +   +     DRF  R++FP+R+ +GQ I F GR L+       +  
Sbjct: 193 SFSNELLERSGLFV-THDDGRMSDRFYQRVMFPLRNPQGQTIGFSGRWLAPEKGQEKDQP 251

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF+K + L+N   A + ++K          +  ++L EG+MDV++  QAG+
Sbjct: 252 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEVVLFEGFMDVIAAWQAGI 301

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           +  ++S+GT+LT  Q++ + KL+  +V C+DGD+ G  A  + I+L+  +   G  V  V
Sbjct: 302 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSRLGLSV--V 359

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410
           ++    DPD ++R YG+ +F++L+      V     R  +       ++   E    L  
Sbjct: 360 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLENEKDKIEYLEELLV 419

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +     +  Y   +    Q   +    +     R  ++N +   +   +Q   Q +
Sbjct: 420 ELSRVVSPIEQDMYLSQLSTEFQVSRETIQKQLRELRRTNQQNRQEPQENQYTQTKRQET 479

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
             K +   +    E  LL       ++     +   + ++ ++   +++    +   +  
Sbjct: 480 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 537

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            F   E    L +     L+ +++             E++  ++     Q L        
Sbjct: 538 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 585

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           L+ +    ++   +    G  +    L   +  +  Q+ Q +
Sbjct: 586 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 627


>gi|114330326|ref|YP_746548.1| DNA primase [Nitrosomonas eutropha C91]
 gi|114307340|gb|ABI58583.1| DNA primase [Nitrosomonas eutropha C91]
          Length = 597

 Score =  343 bits (878), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 185/630 (29%), Positives = 297/630 (47%), Gaps = 66/630 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             + FI++LL  I I +++ +++   +   N     + ACCPFH+EKTPSF  N SK FY
Sbjct: 2   IAQPFIQELLDRIDIVDIVARHLKLKKAGAN-----FTACCPFHNEKTPSFTVNSSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE----------- 111
           +CF C   G+ ++FL    G SF+E+V+ LAA AG+ +P       K             
Sbjct: 57  HCFGCGRHGNAINFLMEHSGVSFVEAVESLAAHAGMQIPAWKNINSKASDSGETSLNEVR 116

Query: 112 -----KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSR 166
                +  +DL   +E A  F+   LK +  +    YL +RG+       F +GYAP   
Sbjct: 117 FDEVIQTSSDLYGRMEQAAKFYRVQLKQS--ELAIAYLKDRGVSGQTALHFGIGYAPSGW 174

Query: 167 YSLREHLRQ--KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT 224
            +L E       G S   ++ +GL I    S  +YDRFR+R++FPI   + ++I FGGR 
Sbjct: 175 QNLAEIFTDYPSGDSSHALVRSGL-IVAHESKKNYDRFRHRIMFPILDLKKRIIGFGGRA 233

Query: 225 LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284
           L   E  KYLNSPET LF KG+ LYN   A   ++KS R          +++VEGYMDV+
Sbjct: 234 LDGSEP-KYLNSPETPLFIKGRELYNLVSAGPAIRKSGR----------VVVVEGYMDVV 282

Query: 285 SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344
            L Q G++NVV++LGTA T   ++ L + +  +V CFDGD+ G +AA++A++  L  L  
Sbjct: 283 MLVQHGIENVVATLGTATTSTHIQKLLRYTDEVVFCFDGDEAGTKAAWRALETSLPQLKD 342

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           G  + F+ L   EDPDS+IR YGK AF+ L+ ++  L     K  +   + +T + RA L
Sbjct: 343 GKDIKFLFLPDKEDPDSYIRKYGKDAFKNLLEKAQLLSVFFCKELSSRVNLSTSEGRARL 402

Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
               +  +  I        +   +  R+ +L      +   + +  KKN     +   S+
Sbjct: 403 VQQAEPLLVQINAPI----FGFMLMKRISELAGVDQNQLIAFLKPGKKNQPSISRSNVSR 458

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
            L  +                 L+  L++ PA + +   +L  +    NE + L + L  
Sbjct: 459 PLSVTPY-------------RRLIQILLHTPAYVDKLDTDLFALNDGQNEEKALLAALVD 505

Query: 525 DFV-----EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL-WSATTE--ANIVDVRQ 576
                            I   L +     LL+++ R +    + W    E    +V +R+
Sbjct: 506 FLKTSSCTSMDELNSVAIMLHLDQTPHRVLLEKIARDIHVKDVDWDIDAEFTGAMVRLRE 565

Query: 577 GYQQALALYKRFRLLS----RQKEEIEKQI 602
             +++       R L+     +K+E+ + I
Sbjct: 566 AQRKSRVAELHNRPLASLTPEEKKELRRLI 595


>gi|301301337|ref|ZP_07207481.1| DNA primase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851065|gb|EFK78805.1| DNA primase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 617

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 150/640 (23%), Positives = 297/640 (46%), Gaps = 39/640 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   I +L  ++ I ++I QYV   +   N     ++  CPFH EKTPSF  N+ K  +
Sbjct: 5   IPEATIDELRSNVNILDVISQYVQLHKSGKN-----WFGICPFHSEKTPSFSVNEQKQIF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120
           +CFSCH  G+   F+  L G SF ESVQR+A +A     + + + + + +      + +L
Sbjct: 60  HCFSCHRGGNVFKFIMELEGLSFPESVQRVAELANYDLGISIDNSENQNETSENGKIRKL 119

Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            +  T  +HH L N    +    YL +RGI+   IE F++G+AP++         QK + 
Sbjct: 120 YKETTKLYHHILVNTVLGEPALEYLHKRGINDDLIEEFEIGFAPENNILEAFFKEQKLYD 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPE 238
            + + ++GL I+  ++    +RF  R++FPIR + GQ IA+ GR L  + ++ KYLNSPE
Sbjct: 180 YQILRKSGLFIERQST-ELVERFNGRVMFPIRDTSGQTIAYSGRLLEKRDDAPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F+K K L+NF  A   +++              IL EG+MDV++  ++G++N ++S+
Sbjct: 239 TAIFNKRKVLFNFDKAKGIIRR----------EKEAILFEGFMDVIAAYRSGIKNGIASM 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT+ Q+  L +++  +V+C+DGD+ G  A  +A++++         V  + +    D
Sbjct: 289 GTSLTDEQIYALDRVTSHLVICYDGDNAGQNATKRALEIIEPTGKFSLEV--IKIPEKLD 346

Query: 359 PDSFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD F + YG   F +L   +    ++       ++++ N  +++ E    +   I  ++D
Sbjct: 347 PDEFTKKYGSEKFVELARNDRKSPLEFYLSYYEQDKNLNNENDQLEYIRDILQEIAKVRD 406

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGK 475
              +  Y   +  R     +   ++          ++  +  +Q   +Q++ ++ + K +
Sbjct: 407 PLEQDLYLNRLAQRFNVAKENLDSQLKQIREKIFAQRAEKQEEQSYQAQQIPRTVIQKNE 466

Query: 476 LS--KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           +    K    E  LL  +++   +       + D  + +   Q +++   + F     + 
Sbjct: 467 VQHFSKAEKAERLLLYRMLHDKNVWLRI-NGIPDFNFIHENYQVIYNLSEAYFDTHDEYE 525

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             +    + E G  +++  L+             +       Q     L+L      L  
Sbjct: 526 VADFLDFINEDGLRQVVVTLEM-----------GDYADEVSEQEINDCLSLIMSQTPLED 574

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           + ++++ ++ +   + +  K   L   L  +  +    +S
Sbjct: 575 KIKKVQTEMLEAKRQNDTAKITKLTMDLISLLKEQQNAKS 614


>gi|269976441|ref|ZP_06183426.1| DNA primase [Mobiluncus mulieris 28-1]
 gi|269935242|gb|EEZ91791.1| DNA primase [Mobiluncus mulieris 28-1]
          Length = 688

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 148/705 (20%), Positives = 251/705 (35%), Gaps = 99/705 (14%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I+ +   IPI  ++G YV   R   N         CPFHDEKTPSFH       
Sbjct: 4   KIDPDDIQKVREAIPIEQIVGDYVTLQRGGVN----SMKGLCPFHDEKTPSFHVTLGANL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           ++CF C   GD + F+  + G +F+E+++ LA  AG+ L  V+       +     +  L
Sbjct: 60  WHCFGCGEGGDLIDFVQRIEGLAFLETIEFLANKAGIVLHYVEGGEAGSTRVEPGTRQRL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +    VA DFF   L +   +    +++ R   S     F +GYAP    +L  HLR  G
Sbjct: 120 LECNRVAQDFFTAQLLSPEAQDARDFVEGRAFTSEDAARFGMGYAPKGWGNLLGHLRDSG 179

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLN 235
           F++ +I   GL      S   YD FR+R+ +PIR + G V+ FG R L   +    KY+N
Sbjct: 180 FTDAEITTVGLAK--MGSRGLYDVFRDRVTWPIRDTTGAVLGFGARRLDDSDPENPKYIN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +PE+ ++HK   LY    A   + +  R           ++VEGY DV++   +GV   V
Sbjct: 238 TPESPIYHKSSVLYGLDLARKTIGEQRR----------CVIVEGYTDVMAAHLSGVTCAV 287

Query: 296 SSLGTALTEYQLRLLW--------------------KLSPRIVLCFDGDDPGLRAAYKAI 335
           ++ GTA T    R++                          ++  FDGD  G +AA KA 
Sbjct: 288 ATCGTAFTGEHARIVRRLIGRPADGASSLRMPDGSAPRGGEVIFTFDGDAAGQKAALKAF 347

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
                      +    +   G DP       G  A   L+    PL + + K        
Sbjct: 348 RTDQDFAA---QSFVAVAGEGLDPCDLRMRRGPGAVRDLVDSRRPLFEFVLKTIIGGFDL 404

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  + R             I+D+ LR  Y   +   L    ++     +  G++ +  ++
Sbjct: 405 DNSEGRVAALRAAAPIAAEIRDRALRQEYVSRLAGWLGVNSREAWETVNAAGQWLRSRSQ 464

Query: 456 -----------------------------------HRDQKGPSQRLMQSSLVKGKLSKKP 480
                                                +       +    L  G  +   
Sbjct: 465 EARGAGLSRGSGGSNGYGGGSVGGGFMSREGNPGGTGNAPALLPVMPPVRLDPGVDTDPV 524

Query: 481 SLREAALLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLF-------------SDF 526
              E   L+  ++ PA+  E  +  L+   +    L+ ++  +                 
Sbjct: 525 WRLERDALVAALHFPALTGETHFDLLSPQGFTQPTLRAIFEVIMAAGGVAEYARLQTEAA 584

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                  P     R       +    L   V D         +   D    +   +    
Sbjct: 585 ASGTSDPPRAALNRWAAAVKSQAGSALGGVVTDLATRPVPVRS--EDEAAPWIHEVMDAL 642

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
               L+R+   +  ++ ++ A    E+   + + L E+  Q+  +
Sbjct: 643 ERLYLNREMAGLRAKLNRLDAG---EEKNAVFAQLMELETQVRAL 684


>gi|227874956|ref|ZP_03993107.1| possible DNA primase [Mobiluncus mulieris ATCC 35243]
 gi|227844476|gb|EEJ54634.1| possible DNA primase [Mobiluncus mulieris ATCC 35243]
          Length = 688

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 148/705 (20%), Positives = 251/705 (35%), Gaps = 99/705 (14%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I+ +   IPI  ++G YV   R   N         CPFHDEKTPSFH       
Sbjct: 4   KIDPDDIQKVREAIPIEQIVGDYVTLQRGGVN----SMKGLCPFHDEKTPSFHVTLGANL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           ++CF C   GD + F+  + G +F+E+++ LA  AG+ L  V+       +     +  L
Sbjct: 60  WHCFGCGEGGDLIDFVQRIEGLAFLETIEFLANKAGIVLHYVEGGEAGSTRVEPGTRQRL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +    VA DFF   L +   +    +++ R   S     F +GYAP    +L  HLR  G
Sbjct: 120 LECNRVAQDFFTAQLLSPEAQDARDFVEGRAFTSEDAARFGMGYAPKGWGNLLGHLRDSG 179

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLN 235
           F++ +I   GL      S   YD FR+R+ +PIR + G V+ FG R L   +    KY+N
Sbjct: 180 FTDAEITTVGLAK--MGSRGLYDVFRDRVTWPIRDTTGAVLGFGARRLDDSDPENPKYIN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +PE+ ++HK   LY    A   + +  R           ++VEGY DV++   +GV   V
Sbjct: 238 TPESPIYHKSSVLYGLDLARKTIGEQRR----------CVIVEGYTDVMAAHLSGVTCAV 287

Query: 296 SSLGTALTEYQLRLLW--------------------KLSPRIVLCFDGDDPGLRAAYKAI 335
           ++ GTA T    R++                          ++  FDGD  G +AA KA 
Sbjct: 288 ATCGTAFTGEHARIVRRLIGRPADGASSLRMPDGSAPRGGEVIFTFDGDAAGQKAALKAF 347

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
                      +    +   G DP       G  A   L+    PL + + K        
Sbjct: 348 RTDQDFAA---QSFVAVAGEGLDPCDLRMRRGPGAVRDLVDSRRPLFEFVLKTIIGGFDL 404

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  + R             I+D+ LR  Y   +   L    ++     +  G++ +  ++
Sbjct: 405 DNSEGRVAALRAAAPIAAEIRDRALRQEYVSRLAGWLGVNSREAWETVNAAGQWLRSRSQ 464

Query: 456 -----------------------------------HRDQKGPSQRLMQSSLVKGKLSKKP 480
                                                +       +    L  G  +   
Sbjct: 465 EARGAGLSRGSGGSNGYGSGSVGGGFMSREGNPGGTGNAPALLPVMPPVRLDPGVDTDPV 524

Query: 481 SLREAALLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLF-------------SDF 526
              E   L+  ++ PA+  E  +  L+   +    L+ ++  +                 
Sbjct: 525 WRLERDALVAALHFPALTGETHFDLLSPQGFTQPTLRAIFEVIMAAGGVAEYARLQTEAA 584

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                  P     R       +    L   V D         +   D    +   +    
Sbjct: 585 ASGTSDPPRAALNRWAAAVKSQAGSALGGVVTDLATRPVPVRS--EDEAAPWIHEVMDAL 642

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
               L+R+   +  ++ ++ A    E+   + + L E+  Q+  +
Sbjct: 643 ERLYLNREMAGLRAKLNRLDAG---EEKNAVFAQLMELETQVRAL 684


>gi|311693207|gb|ADP96080.1| protein containing DNA primase, DnaG/TOPRIM [marine bacterium HP15]
          Length = 575

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 171/602 (28%), Positives = 287/602 (47%), Gaps = 39/602 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ F+++LL  I ++ LIG  +   +   N     Y ACCPFHDEKTPSF+    KGFY
Sbjct: 5   IPQQFVENLLDRIDLAELIGSRITLKKAGAN-----YKACCPFHDEKTPSFNVRPDKGFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD +SF+    G  F E+V+ LA   G+ +P  D   +++ +    L   ++
Sbjct: 60  HCFGCGAHGDAISFVREFEGLGFTEAVEELAKRVGLEVPY-DRAAKQEIQQARTLTDALD 118

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A+ F+  +LK  +      YL +RG+D+  IE +++GYAP +  +L +   +    + +
Sbjct: 119 FASRFYQSALKGQQGAYARDYLQQRGLDNAIIEQYQVGYAPSTGTALFDVASK----DLQ 174

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                     D      D FRNR++FPIR+SRG+ +AFGGRTL   +  KY+NSPE+ +F
Sbjct: 175 GPLIETGTVSDKYGKPRDLFRNRVMFPIRNSRGRTVAFGGRTL-GDDKAKYINSPESDVF 233

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           HK + +Y  F A   +++             +++VEGYMDV++L Q G+   V++LGTA 
Sbjct: 234 HKSREIYGLFEAKQAIRQL----------DKLLVVEGYMDVIALAQHGIHYAVATLGTAT 283

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
            +  L  L K    IV CFDGD  G RAA +A++  L  +  G  + F++L +GEDPD+ 
Sbjct: 284 NQDSLTALLKQVRHIVFCFDGDQAGFRAADRAMENALELMADGLHLQFLMLPQGEDPDTL 343

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +R  G  AF+K I  + PL   L+ R++E      P+ R EL   ++  +N +    LR 
Sbjct: 344 VRKEGPEAFQKRIEGATPLSRYLFDRQSEGLDLQLPEHRGELRARVEPLLNKMPRSTLRD 403

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                +        Q    +    GR+  +      +     +L + S+           
Sbjct: 404 AMWHEMLRLCGGRNQWQSRQQGQKGRWNGERRDRVSEDRIDVKLSKDSI----------- 452

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-HQRL 541
               L L L+  P +  E  + LA      N+ +    ++ ++ +  +  L   +     
Sbjct: 453 ----LCLALLEAPDLATEVTE-LARSSRQFNQARNFAEWILANDIRDRKTLVRTLALDTG 507

Query: 542 CERGFGELLKQLDRQ-VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
               F  L   ++    R++ L +A    +  +     Q+   L +    L+ ++ +  +
Sbjct: 508 ARERFYHLFDGIEHIPARESTLAAARELLSPNEEASRQQRLATLLRNLSNLTSEERQELR 567

Query: 601 QI 602
            +
Sbjct: 568 AL 569


>gi|17228818|ref|NP_485366.1| DNA primase [Nostoc sp. PCC 7120]
 gi|17130670|dbj|BAB73280.1| DNA primase [Nostoc sp. PCC 7120]
          Length = 640

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 163/655 (24%), Positives = 289/655 (44%), Gaps = 45/655 (6%)

Query: 1   MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           M  P    D I ++     I +++ +YV   +R       D+   CPFHDEK+PSF  + 
Sbjct: 1   MQIPRLHPDTIDEVKHRADIVDVVSEYVVLRKRGK-----DFVGLCPFHDEKSPSFTVSQ 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKI 113
           +K  YYCF C   G+ + FL  L   SF + V  LA    VP+    P    +++++  +
Sbjct: 56  TKQMYYCFGCQAGGNSIKFLMELGKRSFADVVLDLARRYQVPVQTLEPEQRQELQRQISL 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH 172
           +  L  ++  A  F+ H+L+ ++ +R   Y L +R  +   I+ F LGYAP    +L  +
Sbjct: 116 REQLYEVLASAASFYQHALRQSQGQRAMQYLLSDRQFNEVTIQQFGLGYAPAGWETLHRY 175

Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
            +  K +    + +AGL+      A  YD FR+RL+ PIR  +G+VI FGGRTL   E  
Sbjct: 176 LVEDKHYPVHLVEKAGLIKPRKEGAGYYDVFRDRLMIPIRDIQGRVIGFGGRTL-TDEQP 234

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF+KGK L+    A   +          +     ++VEGY D ++L  AG+
Sbjct: 235 KYLNSPETELFNKGKTLFALDQAKAGI----------SQFDQAVVVEGYFDAIALHAAGI 284

Query: 292 QNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348
            + V+SLGTAL+  Q+RL+ + +   ++VL FD D  G  AA +AI ++         ++
Sbjct: 285 NHAVASLGTALSLEQVRLILRYTDSKQLVLNFDADKAGTNAAERAIGEIADLAYKGEVQL 344

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
             + +  G+D D ++R +    + +L+  +   ++   ++  ++R      +  ++    
Sbjct: 345 KILNIPDGKDADEYLRSHTPADYGQLLANAPLWLNWQIQQIIKDRDLKQATDFQQVTQQF 404

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              + +I +   R YY     + L     + I                   K  S R  +
Sbjct: 405 VKLLKNIVNSDTRNYYVSYCAEILSLGDTRLIPLRVENLLTQITPTTAGYNKPLSTRTNR 464

Query: 469 SSLVKGKLSKKP-------SLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQKLW 519
           S  +    +           L EA LL   ++ P   +   +EL   ++ +  +  + LW
Sbjct: 465 SLSLVPNPTSSLNGDRSLLELAEALLLRIYLHCPEQRRVIMEELEARNLEFSLSHHRFLW 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             +     EQ      ++  RL +      + +    +      +  T+  I+   Q  Q
Sbjct: 525 QQILECTGEQV-----DLVSRLQDIYLE--IAEELGVISHLFHLNEKTKKEIMRTTQVVQ 577

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            A+A  +R     ++     +   +   + E EK        +   I++ +++ Q
Sbjct: 578 AAIACMERVLT-EKRYRHFLELWQETDPETEPEKWQSYYQAFYTEKIKLQELDRQ 631


>gi|332531767|ref|ZP_08407652.1| DNA primase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038743|gb|EGI75185.1| DNA primase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 583

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 157/629 (24%), Positives = 277/629 (44%), Gaps = 56/629 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR+FI DLL    I +LI   V   +        DY ACCPFH+EK+PSF  +  K F
Sbjct: 4   KIPRNFIDDLLARTDIVDLIDSKVGLKKAGK-----DYQACCPFHNEKSPSFTVSQDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118
           Y+CF C   G+ +SF+       F+++++ +A++  + +P         E+    +    
Sbjct: 59  YHCFGCGANGNAISFVMEYEKLEFVDAIEEIASMLNLEVPREQGANSAPERTAAQKRSDY 118

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L+     F+ H LK ++    +  Y+  RG+    ++ F +GYAP     L   L +  
Sbjct: 119 DLMLHTARFYQHQLKHHSNSAAVIEYVKGRGLSGETVKKFMIGYAPSEWDGLCLQLGRNK 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
             +E+++E  L  +       +D FR+RL+FPIR  RG+VIAFGGR +   +  KYLNSP
Sbjct: 179 EQKEQLVELKLASEKTPGRQ-FDFFRDRLMFPIRDKRGRVIAFGGRVMQADQGPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHKG  LY  + A    +K             +++VEGYMDV++L + G++  V+S
Sbjct: 238 ETRIFHKGFELYGLYEAKQAHKKL----------DHVMIVEGYMDVVALAEQGIEYAVAS 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA T   +  L++ + +++ C+DGD  G  AA++A++  L +L  G  + F  L  GE
Sbjct: 288 LGTATTSEHMHTLFRTTDKVICCYDGDRAGRDAAWRALENALPYLNDGKALQFAFLPDGE 347

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS ++  GK  FE  + ++     +L+ + ++         +A+L       I  I  
Sbjct: 348 DPDSLVQKEGKEQFELRLSQADDFTKVLFNKLSQEVDLTLDSGKAKLLSAALPLIEKIPS 407

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                +Y + I ++L +L  +   + +   +  K+      +   +              
Sbjct: 408 ----EFYQENILEQLGRLIGRTREQLNSRLKTPKQQHSIERKFKITPM------------ 451

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                     +  LI HP + +     L ++   N     L   L    +E++     ++
Sbjct: 452 -------RQAIGILIQHPNLAKSVP-YLPELAQMNIAGIGLLLRLQEQALEKENVTTAQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +        E L +L              E N   +   ++     +   + L+ + E 
Sbjct: 504 LEFFRGTEDYEPLIKLATW---------QHEINEERLETVFKNTFK-FIEDQCLNYRLET 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHI 626
           +   I   T    +++      ++  +  
Sbjct: 554 LL--IKDKTQGLSSDERLECHLLMTALKA 580


>gi|225856716|ref|YP_002738227.1| DNA primase [Streptococcus pneumoniae P1031]
 gi|225724695|gb|ACO20547.1| DNA primase [Streptococcus pneumoniae P1031]
          Length = 586

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 147/629 (23%), Positives = 259/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G  FIE+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVPFIEAVQILGQRVGIEVEKPLYSEQKSASPHQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G++IAF GR   K +S   KY NS  T 
Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKIIAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  + G++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRVGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVKEKSIAA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586


>gi|329943979|ref|ZP_08292248.1| DNA primase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328531412|gb|EGF58254.1| DNA primase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 671

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 149/686 (21%), Positives = 265/686 (38%), Gaps = 76/686 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ I+ +   + I +++G++V           G     CPFHDE+TPSFH     G++
Sbjct: 5   IRREDIEAVRERVRIEDVVGEHVTLKSGG----VGSLKGLCPFHDERTPSFHVRPQLGYW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLIR 119
           +CF C   GD ++F+  +    F E+V+ LA   GV L   +    ++      +  L+ 
Sbjct: 61  HCFGCGEGGDVITFIEKINHLGFAEAVEYLADRTGVQLRYEEGGAVRRGVEPGTRQRLMD 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              +A  +F   L     +    +L  RG D HA   F +GYAP    +L  +LR  G++
Sbjct: 121 ANRLAEAWFREQLAIPEAQAGRDFLTSRGFDRHAAAHFGVGYAPTGWDNLARYLRGAGYT 180

Query: 180 EEKIIEAGLLID-GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           E +++++GL    G +    YDRFR RLI+PIR   G  + FG R LS+ +   KYLN+P
Sbjct: 181 EAELVDSGLCSRGGQDGRRVYDRFRGRLIWPIRDVTGATVGFGARKLSEDDQGPKYLNTP 240

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK + LY    A   + +S R          I++VEGY DV++   +GV   V++
Sbjct: 241 ETPVFHKSQVLYGLDLAKREVARSHR----------IVVVEGYTDVMAAHLSGVTTAVAT 290

Query: 298 LGTALTEYQLRLLWK--------------------LSPRIVLCFDGDDPGLRAAYKAIDL 337
            GTA     +R++ +                        ++  FDGD  G +AA +A   
Sbjct: 291 CGTAFGADHVRVVRRLLGDVDDPAAGVVTGQGREARGGEVIFTFDGDAAGQKAALRAYAE 350

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397
                    +    +   G DP       G     +L+   +PL + + +    +   +T
Sbjct: 351 DQRFAT---QTFVAVDPGGLDPCDLRMKEGDQGIPRLLSRRVPLFEFVIRTSLSHLDLDT 407

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            + R          +  I+D+ L+  Y++ +   L     +  +     GR   +    R
Sbjct: 408 SEGRVRGLRSAAPVVAGIRDRALKREYTRRLAGWLGLPDAEVHSAVRAAGRRGPQPPAAR 467

Query: 458 DQKGPSQRLMQSSLVK-----GKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYD 511
             + P+                 ++      E   L  +I  P         EL    + 
Sbjct: 468 GGQWPADETAGPDAATPVRGLPPVTDPVEQLEREALAVIIQFPVAAHRAGADELGADSFG 527

Query: 512 NNELQKLWSFLFSDFVEQ--KYFLPEEIHQRLCERG--------------------FGEL 549
               + ++  + +          + + +   + E+                         
Sbjct: 528 QLTHRAVYEAVAAAGGTGEVPGLVRQAVAAGMGEQEAQRRATLRWLQQVRDGTIGLVEAA 587

Query: 550 LKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           + +L   V    L +       VDV     Y + +        ++RQ  E+  +  +++ 
Sbjct: 588 ITELA--VAPLPLPTIRGRGTEVDVSGLDRYAKGVISSLAVMGINRQLVEMRSRHRRMSP 645

Query: 608 KGEAEKTAILISILHEVHIQIHQIES 633
           +   E    L S +  +  +  QI  
Sbjct: 646 Q--DEGYRELFSQIAALEQRRMQIRQ 669


>gi|282896680|ref|ZP_06304688.1| DNA primase [Raphidiopsis brookii D9]
 gi|281198398|gb|EFA73286.1| DNA primase [Raphidiopsis brookii D9]
          Length = 636

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 154/651 (23%), Positives = 267/651 (41%), Gaps = 43/651 (6%)

Query: 1   MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           M  P    D ++++     I ++I  YV   RR       D+   CPFH+EKTPSF  + 
Sbjct: 1   MQIPRLHPDTVEEVKHRADIVDVISDYVVLRRRGK-----DFVGLCPFHEEKTPSFTVSP 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKI 113
           +K  YYCF C   G+ + F+  L    F E V  LA    +P+    P    +++++  +
Sbjct: 56  NKQIYYCFGCQASGNAIRFIMDLNKRKFAEVVLDLAKRYQIPVKTLAPEQRQELQRQLSL 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGI-DSHAIEMFKLGYAPDSRYSLREH 172
           +  L  ++   + F+ H L+    ++   YL ++    +  +E F LGYAP    +L  +
Sbjct: 116 RDQLFEVLASTSQFYQHVLRQDIGQQALQYLQKKRFLKTETVEKFALGYAPPGWETLYHY 175

Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
            +  K +  + + +AGL+         YD FRNRL+ PIR  +G+VIAFGGRTL   E  
Sbjct: 176 LVENKSYPAQLVEKAGLIKPRKEGGGYYDVFRNRLMIPIRDVQGRVIAFGGRTL-TDEQP 234

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF K K L+    A + + K              ++VEGY D ++L   G+
Sbjct: 235 KYLNSPETELFDKSKTLFALDVAKDAISKL----------DQAVVVEGYFDAIALHANGI 284

Query: 292 QNVVSSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348
            NVV+SLGTAL+  Q+RLL +   S ++VL FDGD  G+ A  +AI ++         R+
Sbjct: 285 NNVVASLGTALSLEQVRLLLRYSESKQLVLNFDGDKAGINATERAIGEISNLAYKGEVRL 344

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
             + +  G+D D +++ +  T +E+L+VE+   +D    +  + R    P +   +    
Sbjct: 345 KILHIPDGKDADEYLKNHSVTDYEQLLVEAPLWLDWQIAQVIQGRDLKQPTDFQLVSREF 404

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              +  I +     YY     + L     + I              R             
Sbjct: 405 VKLLQKILNSDTLNYYISHCAEILSLGDTRLIPLRVENLITQVAPRRTPTPILRPPASPN 464

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL--ADIRYDNNELQKLWSFLFSDF 526
           +  +           E  LL   ++ P   Q   + L  +++ +  +  + LW       
Sbjct: 465 THQISHPQPSLLEQAEGLLLRIFLHCPQERQVIIETLGSSNLEFSVSHYRFLWEKSLQF- 523

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR---QGYQQALA 583
                    ++  +L               +          E N  ++        QA  
Sbjct: 524 ----PSQTLDLISQLQNLYLET-----QNDLGPVEHIFQLNEKNKQEILLRTNQLVQAAI 574

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                     +     +   +     + ++  +    ++   ++I ++  Q
Sbjct: 575 ACMEKVFRENRYRHFLELWQKTDPSTDPDQYNLYAQTIYADKMRIQELSKQ 625


>gi|268610741|ref|ZP_06144468.1| DNA primase [Ruminococcus flavefaciens FD-1]
          Length = 579

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 149/552 (26%), Positives = 253/552 (45%), Gaps = 26/552 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    +F+  L    PI  ++G YV+  RR  N     Y   CPFH EKTPS        
Sbjct: 1   MPRDDEFLYTLRNANPIETVMGSYVNLIRRGRN-----YVCSCPFHSEKTPSCTVFTETQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            +YCF C   GD ++F   +    F+E+V+ LA  +G+ +P  + +     K +T +  +
Sbjct: 56  SFYCFGCGAGGDVITFTMKIENLDFMEAVKLLAQRSGIEVPERNNRDSSYAKRKTRIYEM 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             +A + ++ +L    DK    Y  +R +    I+ + LGYAPDS   L +HL+ KG+++
Sbjct: 116 NRIAANLYYTNLFKGSDKSGLKYFADRKLTPQTIKKYGLGYAPDSWNFLTDHLKSKGYTD 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           ++I +A L   G  +  ++D FR R++FPI   RG +I FGGR L      KYLN+  T 
Sbjct: 176 DEIADAWLG--GQKNGRTFDMFRKRVMFPIVDMRGNIIGFGGRVL-DDSKPKYLNTGATP 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F KG NL++   A N   K             +IL EGYMDV+++ QAG  NVV++LGT
Sbjct: 233 VFDKGSNLFSMNFAKNANTK------------RLILCEGYMDVIAVNQAGFDNVVATLGT 280

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+T  Q RL+   +  +++ +D D  G +A  KAI         G +   + +   +DPD
Sbjct: 281 AITPDQARLISHYAEEVIIAYDSDGAGQKATQKAI---NHFADVGLQTKIIHMEGAKDPD 337

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +I+ +G   F  L+  S   +D +  +  +    ++   R EL       +  I+    
Sbjct: 338 EYIKKFGVNRFRLLLDGSDDAIDFMLDKCEDGLDLSSEMGRVELLKRTSKVLAGIESALE 397

Query: 421 RYYYSQAIRDRLQ---QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           R  Y      +     Q+ + +I +     RY  K    R+ K  +  +      +    
Sbjct: 398 REVYISRTSKKCDIPVQVLKSHIDDMLKKNRYSAKKNEWRNIKANTNFVRDDVNPEAVNH 457

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           +K +  E  ++  L+  P   ++  + +    +     +K++S L     +   F    +
Sbjct: 458 RKEARAEEMIIYYLLKRPQEWEDVEKAIPPDSFVTPFHKKVYSALLDKMRDADKFTILML 517

Query: 538 HQRLCERGFGEL 549
           +    +   G +
Sbjct: 518 NGEFTQEEMGRI 529


>gi|307564504|ref|ZP_07627045.1| DNA primase [Prevotella amnii CRIS 21A-A]
 gi|307346864|gb|EFN92160.1| DNA primase [Prevotella amnii CRIS 21A-A]
          Length = 645

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 151/667 (22%), Positives = 278/667 (41%), Gaps = 54/667 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  +  +   + I +++  ++   +  T      Y   CPFHD+ TPSF  +  KG Y
Sbjct: 2   IDRQTVDKITDAVNIVDVVSDFISLRKAGT-----SYKGLCPFHDDTTPSFSVSPVKGVY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CF+C   G+ + F+      ++ E+++ LA    + +       + +++  ++  +  +
Sbjct: 57  KCFACGAAGNAVKFVMQYEQMTYWEALRWLAKKYNIEVKERQMTSQEKQQASMRESMFII 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A+ +F   L ++ D +     Y   RG     I+ F LGY+   R SL     + G+
Sbjct: 117 NEWASRYFQDVLHSSTDGKAIGLQYFRSRGFRDDIIKKFMLGYSLPRRDSLAMAALEAGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
            +E ++  GL      +    DRF  R+IFP  S  G+V  FGGR L    KG   KY+N
Sbjct: 177 KKEFLLNTGLC-FERQTGELTDRFSGRVIFPWLSLSGKVTGFGGRLLDSRTKGVMQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP++ +FHK + LY  F A   + K             + +VEGY DVLSL Q G++NVV
Sbjct: 236 SPDSEIFHKERELYGIFWAKKAIAK----------HDLVYMVEGYTDVLSLHQCGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ +Q+R+L + +  IVL +DGD  G  AA +  D++L     G  V  +LL  
Sbjct: 286 ANSGTALSIFQIRMLHRFTSNIVLIYDGDAAGQHAALRGTDMLLSE---GMNVKVLLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPD F + Y      + I E      +++K     +    P +R+E    +   I+ I
Sbjct: 343 GKDPDEFAKMYSSEELVRYIEEHQTDF-IVFKIALLLKGVTDPIKRSEAINSIVESISVI 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSG---YGRYWKKNARHRDQKGPSQRLMQSSLV 472
           KD  LR  Y      R     Q  I++ +      +  ++       +  ++    S   
Sbjct: 402 KDPVLRDTYLHECMARTGVAEQTLISQMNRFIYNNKERERKDSTPRAEIKAEPAATSKSF 461

Query: 473 KGKLSKKPSLREAALLLTLINHPA--ILQEQYQE-------------------LADIRYD 511
              ++ +    E  L+  +I +    I+++                       L ++ + 
Sbjct: 462 PTAITAQAEDVETWLIQQVIRYGEQIIIKDVKDNSSGNLISLNVAQYISYDLGLDNLSFT 521

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
                K+         ++ +       Q   +    E+  +L    +     S   + + 
Sbjct: 522 FPLYNKILQEAIEHSSDEGFVAENYFIQH-PDINISEIATEL-SVEKFKLSESLQPKQDE 579

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             + +  +  +  ++R   +  +  E+++QI Q        K    +  + ++   I + 
Sbjct: 580 AALLENVKHLILDFRRNY-VEHRYNELKEQIKQTQTNEGKIKALAELQKMQQLRNIIAKK 638

Query: 632 ESQEAMI 638
                +I
Sbjct: 639 LGNNIII 645


>gi|77359316|ref|YP_338891.1| DNA primase [Pseudoalteromonas haloplanktis TAC125]
 gi|76874227|emb|CAI85448.1| DNA primase [Pseudoalteromonas haloplanktis TAC125]
          Length = 583

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 157/629 (24%), Positives = 277/629 (44%), Gaps = 56/629 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR+FI DLL    I +LI   V   +        DY ACCPFH+EK+PSF  +  K F
Sbjct: 4   KIPRNFIDDLLARTDIVDLIDSKVGLKKAGK-----DYQACCPFHNEKSPSFTVSQDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118
           Y+CF C V G+ +SF+       F+++++ LA++  + +P         E+    +    
Sbjct: 59  YHCFGCGVNGNAISFVMEYEKLEFVDAIEELASLLNLEVPREQGSGSAPERTAAQKRSDY 118

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L+     F+ H LK ++    +  Y+  RG+    ++ F +GYAP     L   L +  
Sbjct: 119 DLMLHTARFYQHQLKHHSNSAAVIEYVKGRGLSGEIVKKFMIGYAPSEWDGLCLQLGRNK 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
             +E+++E  L  +       +D FR+RL+FPIR  RG+V+AFGGR +   +  KYLNSP
Sbjct: 179 EQKEQLVELKLASEKTPGRQ-FDFFRDRLMFPIRDKRGRVVAFGGRVMQADQGPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHKG  LY  + A    +K             +++VEGYMDV++L + G++  V++
Sbjct: 238 ETRIFHKGFELYGLYEAKQAHKKL----------DHVLIVEGYMDVVALAEQGIEYAVAA 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA T   +  L++ + +++ C+DGD  G  AA++A++  L +L  G  +NFV L  GE
Sbjct: 288 LGTATTSEHMHTLFRTTDKVICCYDGDRAGRDAAWRALENALPYLNDGKALNFVFLPDGE 347

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS ++  GK  FE+ +  +     +L+ + +          +A+L       I  I  
Sbjct: 348 DPDSLVQAEGKDKFEQRLNAADDFTKVLFNKLSLEIDLTLDSGKAKLLSAALPLIEKIPS 407

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                +Y + I ++L +L  +   + +   +  K+      +   +              
Sbjct: 408 ----EFYQENILEQLGRLIGRTREQLNNRLKTPKQQHSIERKFKITPM------------ 451

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                     +  LI HP + +     L D+   N     L   L    ++++     ++
Sbjct: 452 -------RQAIGILIQHPQMAKSVP-YLPDLAQMNIAGIGLLLRLQHQALQKEDVTTAQL 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +        + L +L                   +  +   Q    +   + L+ + E 
Sbjct: 504 LEFFRGTDDYDPLTKLATWQHQIN----------EERLETVFQNTFKFIEDQCLNYRLET 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHI 626
           +   I   T    +++      ++  +  
Sbjct: 554 LL--IKDKTQGLNSDERLECHLLMTALKA 580


>gi|257438256|ref|ZP_05614011.1| DNA primase [Faecalibacterium prausnitzii A2-165]
 gi|257199333|gb|EEU97617.1| DNA primase [Faecalibacterium prausnitzii A2-165]
          Length = 591

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 142/582 (24%), Positives = 256/582 (43%), Gaps = 33/582 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P ++I++L     I +++G YV   R+        Y   CPFH EKTPSF+       +
Sbjct: 2   IPHEYIEELTRRTDIVDVVGNYVQLKRKGR-----LYGGLCPFHSEKTPSFYVYPDTQSF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           YCF C V GD + F+  +    + E+V+ LAA AG+P P  D K  +   +++ ++ + +
Sbjct: 57  YCFGCGVGGDVIHFVRRINSIDYTEAVKMLAARAGMPEPQEDDKTGR---LRSRILSMNK 113

Query: 123 VATDFFHHSLKNA--RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            A  +FH  L +     ++   Y   RG+D   I  F LGYAPD    L ++LR KG+++
Sbjct: 114 EAARYFHACLNSTVEEARQARAYWRRRGLDDKTIVRFGLGYAPDDGQGLYQYLRDKGYNQ 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++  +GL     +    Y  F  R++ PI   RG +IAFGGR L      KY+NSPET+
Sbjct: 174 QELDASGLFKRSQSG-RIYCLFWKRVMTPIFDLRGNIIAFGGRVL-DDSKPKYVNSPETL 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++HK   ++    A     +              +L EGYMDV+S+ QAG+   V + GT
Sbjct: 232 VYHKSDTVFALQIAKKSASR------------RFVLCEGYMDVISMHQAGIDTAVCACGT 279

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q++L+ + +  ++L +D D+ G +A  ++++L         +V  + +   +DPD
Sbjct: 280 ALTPDQVKLISQYAEEVILSYDSDEAGQKATLRSLEL---FRNSPVKVGVLQIPGAKDPD 336

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +I+ YG   F+ L+      +D    R           +R E      N +    +   
Sbjct: 337 EYIKKYGSERFKALLDGVGNALDFRLGRLKNKYDLKQDAQRLEYVKEAVNMLAERSNPTE 396

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ-----RLMQSSLVKGK 475
           +  Y+  + +         +T+ +   +      R    +   Q     ++       G 
Sbjct: 397 QEVYAGRLAEETNISKNAIMTQLADAVKRSNSKRRWAQNQARLQSGEMHQISVPYSAGGS 456

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            +   +  E  LL  ++  P+ + +   +L+  ++   + ++L+        +       
Sbjct: 457 QALGVASAEQRLLAAMLREPSYIPQVRAQLSPEKFVLPQQKELYEAFLQCQEQGIEISLS 516

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
            +   + E    E L +L  Q  D           +  + +G
Sbjct: 517 TLRPFVSEEALNE-LSRLAAQYSDVNCTPDDIRLYLDRIARG 557


>gi|317505340|ref|ZP_07963268.1| DNA primase [Prevotella salivae DSM 15606]
 gi|315663554|gb|EFV03293.1| DNA primase [Prevotella salivae DSM 15606]
          Length = 647

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 147/668 (22%), Positives = 278/668 (41%), Gaps = 65/668 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                ++ +     I +++ ++V   +  +N     Y   CPFH+EKTPSF+ + ++G  
Sbjct: 2   IDSQTVERIKDASNIVDVVSEFVTLRKSGSN-----YKGLCPFHNEKTPSFYVSPARGTC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   G+ +SF+      ++ E+++ LA    + +         ++++  +  +  +
Sbjct: 57  HCFGCGKGGNAVSFIMEHEQMTYPEALRWLAHKYNIEIKERELTDDEKREQSERESMFII 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E  +++F   L N  D       Y   RG     I  F LGY    R +L    +QKG+
Sbjct: 117 NEWVSNYFEDILHNNVDGVAIGMQYFRTRGFRDDVIRKFNLGYDLADRLALARAAKQKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
            +E +++ G+    D      DR+  R+IFP     G+V+ FGGR L    KG + KY+N
Sbjct: 177 QDEYLLKTGVCYRNDRG-ELIDRYSGRVIFPWIGISGKVVGFGGRVLDSRTKGVNQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP++ ++HK   LY  + A   + K  R          + +VEGY DV+S+ Q G++NVV
Sbjct: 236 SPDSDIYHKDHELYGIYQAKKAIAKEDR----------VYMVEGYTDVISMHQCGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ +Q+ +L + +  I L +DGD  G+ AA +  D+    L  G  +  +LL  
Sbjct: 286 ANSGTALSIHQIHMLHRFTANITLLYDGDSAGIHAALRGTDM---LLQEGMNLKVLLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            EDPDSF R +    F+  I        + +K      + N P +R+E    +   I+ +
Sbjct: 343 SEDPDSFARKHSSDEFKDYIESHATDF-IRFKTALLLDNENDPLKRSEAINSIVTSISMV 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           ++  LR  Y Q    R+       IT+ +   R  K           S    Q    K +
Sbjct: 402 QNPILRDTYLQDCSHRIGINEATLITQMNNMIRDRKATGSMSPTGVQSAPTGQQPYEKNQ 461

Query: 476 LSK-------KPSLREAALLLTLINHPA--ILQEQYQE------------------LADI 508
            +          S  E  +L  +I +    + +                          +
Sbjct: 462 AAALAQSQMHTESKVEQLMLQLIIKYGDRLVFKNIKDADGNLIEFSIGEYIHYNLSADGL 521

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
            ++N    ++   +     ++ +                  + QL   + +     + ++
Sbjct: 522 SFENELYNRILQEVVEKVSDRSFKTEPYFVHH-----HDINISQLAINMTEERFKLSESQ 576

Query: 569 ANIVDVRQGYQQALALYK--RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
               D      +A+ L    R   + +   E++++IA+ ++    ++   L++   E+  
Sbjct: 577 QEKNDDDSLKNRAIHLMLDFRMEYIEKHLRELKQKIAKASS----DELLSLMAEYKEMTE 632

Query: 627 QIHQIESQ 634
             + +  Q
Sbjct: 633 MRNILAKQ 640


>gi|121604511|ref|YP_981840.1| DNA primase [Polaromonas naphthalenivorans CJ2]
 gi|120593480|gb|ABM36919.1| DNA primase [Polaromonas naphthalenivorans CJ2]
          Length = 676

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 181/703 (25%), Positives = 281/703 (39%), Gaps = 111/703 (15%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+ FI++LL    + +++G+YV   +   N     +   CPFH EK+PSF  + SK 
Sbjct: 1   MAIPQSFIQELLARTDVVDIVGRYVQLKKGGAN-----FMGLCPFHGEKSPSFSVSPSKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD------PKIEKKEKIQ 114
           FY+CF C   G+ +SFL    G +FIE+V+ LA   G+ +P  D       K  +  + Q
Sbjct: 56  FYHCFGCGKNGNAISFLMDHAGMTFIEAVKDLAQQYGLQVPEDDVSPQDRAKAAQAREQQ 115

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  ++E A   +  SL+ +  +R   Y   RG+     + F LGYAP+   SL     
Sbjct: 116 ATLTSVLEKAGRAYIRSLRTS--ERAIQYFKRRGVSGEIAKTFGLGYAPEGWRSLASVF- 172

Query: 175 QKGFSEEKIIEAGLLIDGDN-------SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
              ++   ++E+GL+I G+         A  YDRFR+R++FPIR+ +G+ I FGGR L  
Sbjct: 173 -PDYNNPLLVESGLVITGEPGEDNAAGEAKRYDRFRDRVMFPIRNVKGECIGFGGRVL-G 230

Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
            E  KYLNSPET +F KG+ LY  F A   L+             + ++ EGYMDV++L 
Sbjct: 231 DEKPKYLNSPETPVFSKGRELYGLFEARTALR----------EHGYALVTEGYMDVVALA 280

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           Q G  N V++LGTA T   ++ L++ +  +V  FDGD  G RAA KA+D  L        
Sbjct: 281 QLGFANAVATLGTACTAEHVQKLFRFTESVVFSFDGDSAGRRAARKALDAALPFASDVRT 340

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
           V F+ L    DPDSFIR +G+  F   + +++PL   L +   E    +T + RA +  +
Sbjct: 341 VKFLFLPAEHDPDSFIREHGQEGFAACVAKAVPLSRFLIEAAAEGCDLDTAEGRAHMASN 400

Query: 408 LKNCINHIKDQKLRYYYSQAIR-------DRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
            +   + + +  L+      I          L QL+Q        Y +            
Sbjct: 401 ARPLWSALPEGALKPQLLAEIAEQVMIDSRELLQLWQPASGGRKPYYKKNSGPPPQPQNF 460

Query: 461 GP-----------------------------------------SQRLMQSSLVKGKLSKK 479
            P                                         S      S   GK  +K
Sbjct: 461 RPEHPAPELDHGMPEFGDYPPMGLHDEPDYASSEPYFSQPPAYSPSPAAPSGKPGKFGRK 520

Query: 480 P----------------SLREAALLLTLINHPAILQEQYQELADIRYDNNE-LQKLWSFL 522
           P                + RE  +L  L+  P        E   +          L+++L
Sbjct: 521 PFPSGSAPRRMTGRILPASREDRVLRLLLTEPQSWDRLSTEEHHLLLALPAPHGPLFAWL 580

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            S   E        + + L                       A     +  V   + +  
Sbjct: 581 ESQLHEHGPQSWAVLREGLRGHAHE-------------HHAVAQFAEVLEGVDYDWDETR 627

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
            +  + + L R  E  E      +     E+   L++      
Sbjct: 628 RILMQLQQLKRDSEIAELAARAPSEPAVLERLRELLAQSRAEK 670


>gi|332075403|gb|EGI85872.1| DNA primase [Streptococcus pneumoniae GA41301]
          Length = 586

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 147/629 (23%), Positives = 259/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G  FIE+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVPFIEAVQILGQRVGIEVEKPLYSEQKSASPHQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    +L +RG+    ++ F +G AP  R  L + L  +    E 
Sbjct: 118 AAKFYHAILMTTTMGEEARNHLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     ++    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  + G++N V+S+GT
Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRVGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 341 EYLQKNGPEDLVYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVKEKSIAA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQVQRQNRMEGISRPTPIT----MPITKQLSAI 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +   E Q L+  L   +              
Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      E  ++++R            E +  ++ +     + + +   LL++    I+K
Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDIDTALEELERLISQKRRME 586


>gi|293570225|ref|ZP_06681294.1| DNA primase [Enterococcus faecium E980]
 gi|291609632|gb|EFF38893.1| DNA primase [Enterococcus faecium E980]
          Length = 613

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 153/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+ +     I  +IGQYV   +   N     Y   CPFH+E+TPSF   + K  
Sbjct: 4   RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           ++CF C   G+  +FL  L G SF E+V ++A    +PL          ++  E     L
Sbjct: 59  FHCFGCGKGGNVFTFLQELEGLSFPEAVIKVADFEQIPLEDQWRQRTVAVQNPESATGKL 118

Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I   E A + +HH  L     +    YL  RG+    IE F +G+AP+ R  L++  + +
Sbjct: 119 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231
            FS E +  +GL +   +     DRF  R++FP+R+ +GQ I F GR L+       +  
Sbjct: 179 SFSNELLERSGLFV-THDDGRLSDRFYQRVMFPLRNPQGQTIGFSGRWLAPEKGQEKDQP 237

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF+K + L+N   A + ++K          +  I+L EG+MDV++  QAG+
Sbjct: 238 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEILLFEGFMDVIAAWQAGI 287

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           +  ++S+GT+LT  Q++ + KL+  +V C+DGD+ G  A  + I+L+  +   G  V  V
Sbjct: 288 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSRLGLSV--V 345

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410
           ++    DPD ++R YG+ +F++L+      V     R  +       ++   E    L  
Sbjct: 346 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLENEKDKIEYLEELLV 405

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +     +  Y   +    Q   +    +     R  ++N +   +   +Q   Q +
Sbjct: 406 ELSRVVSPIEQDMYLSQLSTEFQVSRETIQKQLRELRRTNQQNRQEPQENQHTQTKRQET 465

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
             K +   +    E  LL       ++     +   + ++ ++   +++    +   +  
Sbjct: 466 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 523

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            F   E    L +     L+ +++             E++  ++     Q L        
Sbjct: 524 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 571

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           L+ +    ++   +    G  +    L   +  +  Q+ Q +
Sbjct: 572 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 613


>gi|37523652|ref|NP_927029.1| DNA primase [Gloeobacter violaceus PCC 7421]
 gi|35214657|dbj|BAC92024.1| DNA primase [Gloeobacter violaceus PCC 7421]
          Length = 638

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 162/639 (25%), Positives = 285/639 (44%), Gaps = 35/639 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I ++     + +++ + V   +        D+   CPFH++++PSF+ +  K  Y
Sbjct: 6   LHPRTIDEVRAKADLVDVVSERVVLRKAGR-----DFKGLCPFHEDRSPSFYVSPGKQIY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKIQTDLI 118
            CF+C   GD   F+  L   +F E V  LA   GVP+    P    +  +K   Q  L 
Sbjct: 61  KCFACGASGDVFKFVMELDKSAFGEVVLELARRFGVPVQTLKPEQKAEYTRKLSKQQQLG 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREH-LRQK 176
            ++E+A  F+ ++L   R      YL E R +    I  F+LG+AP+   SL  + + QK
Sbjct: 121 EILELAAQFYSYALWGERGAAARQYLLEARALSEKTIRQFRLGFAPEGWQSLYTYLVDQK 180

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            F    + EAGL+I   +    YDRFR+RLI PI   +G+VIAFGGR +   E  KYLNS
Sbjct: 181 RFPASLVEEAGLIIPRSSGQGYYDRFRHRLIIPICDLKGKVIAFGGRAM-GDEQPKYLNS 239

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET LF+KG+ LY    A   + +          +   I+VEGY D ++L Q+G+ +VV+
Sbjct: 240 PETELFNKGQTLYALDQARESVGR----------TDGAIVVEGYFDAIALHQSGISHVVA 289

Query: 297 SLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVLL 353
           +LGT+L   Q++ L + +   R+VL FD D  G++AA +AI +L    +  G ++  V L
Sbjct: 290 TLGTSLRTDQIKQLLRYTESKRVVLNFDADAAGVQAAERAIAELRPLVVKSGVQLRIVAL 349

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G+DPD F+R +    + KL  E+   +D   +R    R  +   +  ++   L   ++
Sbjct: 350 PAGKDPDEFLRSHPPQEYLKLASEAPLWIDWQIERLFAGRDLSLAADFQQVSQGLVELLS 409

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +     R +Y   I  +L Q   +  ++     R   +  R            +S   +
Sbjct: 410 GLLSSMTRAHYIHLIAGQLSQGNGRLASQLEDELRRRIRTHRWGGG------DGKSKKKR 463

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDFVEQKY 531
                     E  L+   ++     ++ ++ L +  + +     ++LW  +     E   
Sbjct: 464 EPFPPACFQAEVQLIQIYLHFAEYREDIHRGLDEHDLEFSVLHHRQLWQKILQLREEIGE 523

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQ--VRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                +  R    G  EL ++L +   + +    +      ++       Q     +R+ 
Sbjct: 524 DDDVVVALRTMYAGDPELNQRLGQLLWLNEHNRIALMRPRMVIRAGLATLQLDRCERRYN 583

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            L++  +E E++ A   A    E+       ++++   +
Sbjct: 584 YLNQLCDEAERRGAWEEADYFVEQRNAEYHRINDLKTHL 622


>gi|224823887|ref|ZP_03696996.1| DNA primase [Lutiella nitroferrum 2002]
 gi|224604342|gb|EEG10516.1| DNA primase [Lutiella nitroferrum 2002]
          Length = 587

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 178/626 (28%), Positives = 300/626 (47%), Gaps = 50/626 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+DFI  LL  + I +++ +YV   +   N     + ACCPFH EK+PSF  + SK FY
Sbjct: 2   IPQDFIDQLLSRVDIVDVVDRYVPLKKAGQN-----FLACCPFHKEKSPSFTVSPSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQT-DLI 118
           +CF C   G  + F+    G SF+++++ LA   G+P+P     +P+  ++ + +   L 
Sbjct: 57  HCFGCGAHGSAIGFVMEYQGLSFVDAIRLLAEGLGMPVPAERSANPQASREARERKVTLE 116

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            L++ A  ++   LK++       Y   RG+       F LGYAP    +L+       +
Sbjct: 117 DLLQRAAAYYKQQLKSSPAA--IGYFKGRGLTGEIAARFGLGYAPGEWQNLQAIFTD--Y 172

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            +EK++E+GL+I   +    YDRFR+R++FPIR+ RG +I FGGR L KGE  KYLNSPE
Sbjct: 173 QDEKLVESGLVI-AGDEGKRYDRFRDRVMFPIRNQRGGIIGFGGRVLGKGEP-KYLNSPE 230

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF KG+ LY  + A   +++  R          +++VEGYMDV++L Q GV+  V++L
Sbjct: 231 TPLFEKGRELYGLYEARQAIREKNR----------VLVVEGYMDVVALAQYGVEYAVATL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T   +R L + + ++  CFDGD  G +AA++A++  L  L+ G  +NF+ L +  D
Sbjct: 281 GTATTGEHVRKLLRHADQVYFCFDGDKAGQKAAWRALENSLPQLVDGKALNFLFLPQEHD 340

Query: 359 PDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PDS+IR +G+ AFE+ +  +SLPL   L +  T     NTP+ +A+L       +N I  
Sbjct: 341 PDSYIREFGREAFEECLEQQSLPLSVYLTRELTGRADMNTPEGKADLIRQAMPLLNQIAA 400

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             L     + + +       +      G  +  +K  R       S R + + +V+ +  
Sbjct: 401 PALALIIKKRLAELAGVDVDE-FDMLMGLKKPERKGRREYRLPNESNRYINTPIVRKQ-- 457

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-YFLPEE 536
                     +  L+ +P   ++       +   +      ++ L     E         
Sbjct: 458 ----------IKWLLMNPRWAEDVTLS-DSVALSDEL--ACFAMLAERVHEMPQEPNTAR 504

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + + +    F  L+  + +Q        A T     + RQ +Q       +      ++ 
Sbjct: 505 LVESIRGTPFEGLVDSVLQQAMQDPDEFADTG---EEARQQFQDGNVKLLKLL----REA 557

Query: 597 EIEKQIAQVTAKGEAEKTAILISILH 622
           E+E+   +   +G   +   L+  L 
Sbjct: 558 ELERLKQKSRNEGLTPEETQLLRALL 583


>gi|332709461|ref|ZP_08429422.1| DNA primase [Lyngbya majuscula 3L]
 gi|332351720|gb|EGJ31299.1| DNA primase [Lyngbya majuscula 3L]
          Length = 652

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 160/661 (24%), Positives = 279/661 (42%), Gaps = 49/661 (7%)

Query: 1   MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           MN P    + I+ +     I ++I ++V   +R       D+   CPFH+EKTPSF  + 
Sbjct: 1   MNIPRLHPNTIEAVKERSDIVDVISEHVVLRKRGR-----DHVGLCPFHEEKTPSFTVSP 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---- 113
           SK  YYCF C   G+ + FL  +   SF + V  LA    VP+  + P+  ++ +     
Sbjct: 56  SKQLYYCFGCQAGGNAIKFLMEIGKHSFSDVVLDLAQRYQVPVQTLQPEQREQLQRQLSL 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLD-ERGIDSHAIEMFKLGYAPDSRYSLREH 172
           Q  L  ++ +AT F+ H+L+  + ++   YL  +RG+    I  F+LGYAP S  ++  +
Sbjct: 116 QEQLYEILALATAFYQHALRQPQGQQALEYLRGQRGLSEETIITFELGYAPASWQTIYRY 175

Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
           L +      K++E   LI   ++   YD FR+R++ PI  ++G+VI FG R+L   E  K
Sbjct: 176 LVEHKRKPVKLVEQAGLIKPRDNGGYYDGFRDRIMIPIHDTQGRVIGFGARSL-GDEQPK 234

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPET LF K K L+    A N + K              ++VEGY D ++L   G+ 
Sbjct: 235 YLNSPETPLFDKSKTLFALDKARNSITKQ----------DQAVVVEGYFDAIALHATGIT 284

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA---IDLVLCHLIPGNRVN 349
           N+V+SLGTA +  Q+R L + +    +  + D              ++         ++ 
Sbjct: 285 NIVASLGTAFSLDQVRQLSRYTESKQIVLNFDADAAGTTAAQRAIGEIANLAYQGLVQLR 344

Query: 350 FVLLSRGEDPDSFIR--CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
            + L  G+D D F++        + +L++ +   +D    +    +     D+  ++   
Sbjct: 345 VLNLPDGKDADEFLKSAPDATEQYRQLLLNAPLWLDWQINQLLIGKDLQQADQFQQVAQA 404

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQ--------LFQKYITEHSGYGRYWKKNARHRDQ 459
           +   +  ++D     YY       L Q          + + T+     R   K +  R +
Sbjct: 405 MVKLLKQLEDINQLTYYINYCAQILSQGQGKLVSLYIENFQTQLQKPLRAAFKKSPPRLK 464

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQK 517
           K   Q    S+L  GK        EA LL   ++ P   Q     L   D+ +  +  + 
Sbjct: 465 KTKQQGNQDSNLPVGKERTLLERAEALLLRIYLHCPEYRQTIIDTLDQGDLLFSLSHHRF 524

Query: 518 LWSFLFSDFVEQKYF---LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
           LW  +         F    PE++  RL +R       Q  R++          E    D+
Sbjct: 525 LWQQIIELQGIGTQFYTTTPEQLISRLQDRSL-----QFPREMTQVAHLFHLDETCTEDI 579

Query: 575 RQG--YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +     QA A       L + +    +Q  ++    + ++         E + ++ ++E
Sbjct: 580 LRAPMVIQAAAASLEIVALEKHRRYCLEQWQKIDLSNDWQRKQYYWQECQEANRRLIELE 639

Query: 633 S 633
            
Sbjct: 640 K 640


>gi|325105391|ref|YP_004275045.1| DNA primase [Pedobacter saltans DSM 12145]
 gi|324974239|gb|ADY53223.1| DNA primase [Pedobacter saltans DSM 12145]
          Length = 646

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 160/654 (24%), Positives = 274/654 (41%), Gaps = 47/654 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +L    I  ++G +V   +R T          CPFH EKTPSFH + +KG Y
Sbjct: 2   IKKETVERILETARIEEVVGDFVHLKKRGT-----SMIGLCPFHGEKTPSFHVSPAKGIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120
            CF C   GD L F+ +    S+ E+++ LA    + +    V  + + +   +  L   
Sbjct: 57  KCFGCGEGGDSLQFVMSHEKYSYPEALRYLANKYNIEVEEIEVSDEYKAEADKRESLYIT 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A  FF   L N  + R     Y  ERG     ++ F++GY+P+   SL +    +G+
Sbjct: 117 TAYAAKFFADKLWNTDEGRSIGLSYFKERGFKEDILKKFEIGYSPEEWTSLYDSATAEGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
            +E + E GL+I  D   + YDRFR R+IFPI +  G++I FGGRTL   +   KY+NSP
Sbjct: 177 KQEFLEETGLVIKNDKG-SVYDRFRTRVIFPIHNFTGRIIGFGGRTLKTDKKIPKYVNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ +++K K LY  F A   ++               +LVEGY DVLS+ QAGV+NVV+S
Sbjct: 236 ESEIYYKSKVLYGLFHAKKAIR----------ERDNCLLVEGYADVLSVHQAGVENVVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GT+LT  Q++L+ + +  + + +DGD  G++A+ + +D+    L  G  V  VL   G 
Sbjct: 286 SGTSLTTEQIKLIGRFTNNVTILYDGDAAGIKASLRGLDM---ILEEGLNVKVVLFPDGH 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS+I+ +G +AF+  +  +               + N P ++A +   +   I  I D
Sbjct: 343 DPDSYIQTFGASAFKTHVELNTKDFIFYKTEILLQDAANDPIKKAGVIRDVIESIAKIPD 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y +     LQ   Q  I+E +       K                         
Sbjct: 403 AIKASVYVRECSSLLQMEEQILISELNKIRLAKSKKEAPNQPGSNFPPPEFYEEGPPPDL 462

Query: 478 --------KKPSLREAALLLTLINHPAILQEQYQ------------ELADIRYDNNELQK 517
                   ++   +E  ++  L+++   L                  L D+ + N  L K
Sbjct: 463 FDDNRQSIQEDLPQEKEMIRILLSYGHHLVNWDDITDTYIGPYIVMNLNDVTFTNAALDK 522

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           +  +   +  +    L ++  Q          +  L      +  W       + +    
Sbjct: 523 ILKYYIQEVEKGTLPLEKDFLQHQDREISSMAISLLTSPYNLSENWYNMHNITVKNESDH 582

Query: 578 YQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +  +     + + + +     E ++++ Q   +            L EV   I
Sbjct: 583 LKSTVMGAIFHLKKKKVLALMAEKQREMQQEQDEANLMILVKNYMELKEVEKYI 636


>gi|284040804|ref|YP_003390734.1| DNA primase [Spirosoma linguale DSM 74]
 gi|283820097|gb|ADB41935.1| DNA primase [Spirosoma linguale DSM 74]
          Length = 703

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 159/719 (22%), Positives = 287/719 (39%), Gaps = 105/719 (14%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P + ++ +     I  +I  +V   +R +N     Y ACCPFH+EKTPSF+ N ++ 
Sbjct: 1   MRIPEETVERIRQSADILEVINDFVSLKKRGSN-----YIACCPFHNEKTPSFNVNPTRQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            Y CF C   GD + F+  +    + E+++ LA   G+ +      P+   ++  +  L+
Sbjct: 56  IYKCFGCGKAGDSVRFIMDIENIGYGEALRYLAKKYGIEIEEQEQTPEDLLRQNERESLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            ++  A  FF  +LK   + +     Y  ERG  +  I+ F+LGY  D   +L +   ++
Sbjct: 116 IVLNFAKTFFQETLKTTDEGKSIGLSYFRERGFTNPTIDAFELGYTLDQWDALLKEGIRR 175

Query: 177 GFSEEKIIEAGLLIDGD----NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-- 230
           G+S + + +AGL++  +      +  +DRFR R++FPI +  G+VIAFG R L   ++  
Sbjct: 176 GYSRDLLEKAGLILVKEGSAGGDSKVFDRFRGRVMFPIHNVSGRVIAFGARILKTDKNQP 235

Query: 231 ----VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
                KYLNSPET ++HK + LY  + A   ++                L EGY DV+SL
Sbjct: 236 GGAAPKYLNSPETSVYHKSQVLYGIYQAKQAIR----------QEDVCYLTEGYTDVISL 285

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
            QAG++NVV+S GT+LT  Q+RL+ + +P + + +DGD  G++AA + +D+VL   +   
Sbjct: 286 HQAGIKNVVASSGTSLTTEQIRLISRFTPNVTILYDGDAAGIKAALRGLDMVLEEGL--- 342

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELE 405
            +  +LL  GEDPDS++   G  AF+      S   +D    R       N       + 
Sbjct: 343 NLRLLLLPDGEDPDSYVHKIGADAFKTYIREHSQDFIDFKASRWLTEAGDNPLKRAEGIS 402

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRD-----------RLQQLFQKYITEHSGYGRYWKKNA 454
               +    I D   R   SQ +              + +L +K   +        ++  
Sbjct: 403 DVCVSIT-KIPDALKRQTLSQRVAQVFHVSEQSVISEINRLLRKQHDQSKKDAERQQRTG 461

Query: 455 RHRDQKGPSQRLMQSSLVK------------------------------------GKLSK 478
               +K  S + M                                            +  
Sbjct: 462 DPSARKATSSQAMPPGEPSLDDINSLLDGFAPELSEMDFPAEAVAPGKFTTDERTKGVRT 521

Query: 479 KPSLREAALLLTLINHP--------AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
             S +E   +  LIN+          + Q    EL +I +       + +     +    
Sbjct: 522 PLSYQEEECVRLLINYGVRELEPGITLCQYVLSELHEIEFQTAPYDLILTLFREAYSRGD 581

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRD-------------AGLWSATTEANIVDVRQG 577
               ++      +        ++  Q                       +E  +  +   
Sbjct: 582 ILTADDFLNHRSDASDRPGGAEIQNQAIHLTTPRYEISEGWLKHEIFVPSEEEVGILADA 641

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQ 634
             + + L  +  L  ++   +++ + +  +K   EA++          + I+I  +   
Sbjct: 642 AYRNI-LRIKKLLAEQRMATLQQLLRESGSKSPEEADQLLTEFMHFKRIDIEISSLLGT 699


>gi|116070448|ref|ZP_01467717.1| DNA primase [Synechococcus sp. BL107]
 gi|116065853|gb|EAU71610.1| DNA primase [Synechococcus sp. BL107]
          Length = 686

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 167/678 (24%), Positives = 293/678 (43%), Gaps = 70/678 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ +     I +++G++V   ++       ++   CPFHD+  PS   + +K F
Sbjct: 5   RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           YYCFSC   G+ + FL      SF + V  LA    +P+  VD   +++ +     +  L
Sbjct: 60  YYCFSCGAGGNSIKFLMEFQRQSFSDVVLDLARRYQLPIETVDGPQQERLRQQLSRRDKL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            R + +A+ +F   L++        Y  ++RG+     + F+LGYAPD    L  HL+Q 
Sbjct: 120 QRALALASGWFRTQLRSPAGHEALNYLTEQRGLSPAVQDAFELGYAPDQWDGLLNHLQQV 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G + + +  AGL++        YDRFR+R+I PI   +G+VI FGGR+L   E  KYLN
Sbjct: 180 EGLAPDLLEAAGLVVPRKGGNGFYDRFRHRVIVPIHDRQGRVIGFGGRSLDGSEP-KYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK+L+    A N ++K  R           ++VEGY DV++L  AG+ N V
Sbjct: 239 SPETEVFEKGKHLFGLDKASNAIRKDDRA----------VVVEGYFDVIALHAAGITNAV 288

Query: 296 SSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352
           +SLGTAL+  Q+  L +   S RIVL FD D  G+RAA +AI  V    + G   +  + 
Sbjct: 289 ASLGTALSSQQITQLCRVTDSKRIVLNFDADGAGVRAANRAIGEVEQLSLQGQLELRVLH 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+DPD F++ +G   +  L+ ++   +D   ++   +R  +  D+  +    L   +
Sbjct: 349 LPTGKDPDEFLKDHGAGDYRALLDQAPLWLDWQIEQALADRDLSRADQFQQAVSSLVALL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    +R +Y Q + +RL     +   +     R   K  R             S   
Sbjct: 409 GKLPQSAVRTHYLQRVAERLSGGQGRLALQLEEDLRQQVKGQRWHG--------RSSRHE 460

Query: 473 KGKLSKKPSLREAALLLTLINHP---AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +     +    EA LL   ++ P   A+++++ ++     +     + LW+ +       
Sbjct: 461 QPGEISQRERSEADLLRLYLHCPRHRAVIRQELRQRELEDFAIQHHRHLWAAITELEETN 520

Query: 530 KYFLPEEIHQR----------------------LCERGFGELLK------QLDRQVRDAG 561
                 E   R                      L        L       +L R      
Sbjct: 521 LGVGRLEAISRCDDAGDGLDDLDLPRLLTDQLLLENSALVSRLTPLLEPGELQRVSLAEP 580

Query: 562 LWSATTEANIVDVRQGYQQALALY-----KRFRLLSRQKEEIEKQIAQVTAKGE-AEKTA 615
           L      A +++ ++  ++   L      +R + L      +  QI Q+T   +  +   
Sbjct: 581 LELLRGTAALLERQKSLKRCRHLLEAWGGQRLQTLESCIAVLIDQIQQITDPHDNTDMEM 640

Query: 616 ILISILHEVHIQIHQIES 633
            + ++  +++    + + 
Sbjct: 641 RIQALFDDLNRDALRYQE 658


>gi|217969611|ref|YP_002354845.1| DNA primase [Thauera sp. MZ1T]
 gi|217506938|gb|ACK53949.1| DNA primase [Thauera sp. MZ1T]
          Length = 631

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 176/657 (26%), Positives = 274/657 (41%), Gaps = 65/657 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ F+++LL  + I ++I +Y+   +   N     Y+ACCPFH EK+ SF  + SK FY
Sbjct: 2   IPQSFVQELLSRVDIVDVIERYLPLKKSGAN-----YFACCPFHGEKSASFSVSPSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRLI 121
           +CF C V G  + FL    G  F+++++ LAA  G+ +P          +     L   +
Sbjct: 57  HCFGCGVHGSAVGFLMEYSGLGFVDAIKELAAQVGLQVPDDGRSAAPVHDDPSERLYEAM 116

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            VA  F+   LK +  ++   YL  RG+       F LGYAPD   +L +      +  +
Sbjct: 117 AVAARFYRDQLKPS--RQAIDYLKRRGLSGEVAARFGLGYAPDEWQALEKAF--PDYQAK 172

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            + +AGL+ID +     YDRFRNR+IFPI   RG++IAFGGR L KGE  KYLNSPET L
Sbjct: 173 TLADAGLVIDNEQGRR-YDRFRNRIIFPIHDRRGRIIAFGGRVLDKGEP-KYLNSPETPL 230

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KG+ LY  F A   ++           + F ++VEGYMDV++L Q  ++N V++LGTA
Sbjct: 231 FEKGRELYGLFLAQKAIR----------DAGFAVVVEGYMDVVALAQFAIENAVATLGTA 280

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T   +  L + + RIV CFDGD  G RAA++A++  L  L     + F+ L    DPDS
Sbjct: 281 TTPQHIHTLLRQTDRIVFCFDGDAAGRRAAWRALENALESLRDDATLAFLFLPAEHDPDS 340

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           F+R  G  AF K  + + PL   L +  +     ++ + RA         +  I    L+
Sbjct: 341 FVRAEGTEAFRKAALAATPLGSFLIQELSGRHPLDSAEGRAAFVHEAAPLVTRIAAPLLK 400

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM-------------- 467
               +A+ +       +             +         P                   
Sbjct: 401 LQVVKAVAESAGMTQGEVEYAFEQLAASAPRRRGASAPTPPRAPAASIASTEADAPFFDD 460

Query: 468 ------------QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
                       Q+   +    +KP      LL  ++ HP         L      + E 
Sbjct: 461 APPPARSAPPRGQAPRPRAGGRRKPPSTAGTLLRLVMQHPTWAARMPVGLVPDD--SPEG 518

Query: 516 QKLWSFLFSDFVEQKYFL---PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
             L   +       +         + +R  E    E L ++  ++ +A    A  E    
Sbjct: 519 LALI-AIIDLCSLGEPIPSGGLGALIERFRETPHAETLSRVAAELVEAEFDEAVVETLFE 577

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           D             R   +    +EI   + +   +G        +  L      + 
Sbjct: 578 DA-----------LRKLQIDGVGKEITALLQRDREQGLDAAGRHRLGELLLEKRNLA 623


>gi|220927993|ref|YP_002504902.1| DNA primase [Clostridium cellulolyticum H10]
 gi|219998321|gb|ACL74922.1| DNA primase [Clostridium cellulolyticum H10]
          Length = 604

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 178/619 (28%), Positives = 298/619 (48%), Gaps = 36/619 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           +P D I+++ +   I  +I +YV  +++  N     ++  CPFH+EKT SF     K  +
Sbjct: 5   FPDDLIEEIRVSNDIVGIISEYVKLEKKGKN-----FFGKCPFHNEKTASFSVEPVKQIF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120
           +CF C   G+ + F+ ++    F ++++ LA  A + +P  +   + ++K  ++ +L+++
Sbjct: 60  HCFGCGKGGNVIHFIMSIENLEFPDALRFLADRAKILIPDMIEGNRNDEKAGLKRELLQI 119

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A  FF  +L N ++K  + YL  R I  + +  F LGYA D   +L +HL+ KGFS+
Sbjct: 120 NLEAARFFRDNLNNDKNKLPNSYLINRKIQKNTVAKFGLGYAEDRFDTLYKHLKAKGFSD 179

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             I  +GL+I  + S   YDRFR R++FPI   RG VIAFGGR L   +  KY+NSPET 
Sbjct: 180 TSIKNSGLVIYKEESGNIYDRFRGRIMFPIFDIRGNVIAFGGRVLDSSQP-KYMNSPETE 238

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++HKGK+LY    A N   +             +IL EGYMDV+SL Q+G+ N V+ LGT
Sbjct: 239 VYHKGKHLYALNFAKNTCSR------------RLILAEGYMDVISLHQSGILNSVAPLGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q RLL K +  IVL FD D  G  AA++++DL       G  V  + +  G+DPD
Sbjct: 287 ALTENQGRLLKKYTEEIVLSFDSDSAGRAAAFRSLDL---LNEIGCNVKVLTIPSGKDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FI+ YG   F++L+  S  L+D        +   +T + +          ++ I +   
Sbjct: 344 EFIKAYGVAEFKRLVDRSESLLDFKLGSLKNDIDTSTNEGKVRFLDKAVLILDKIDNNVE 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK-KNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           +  Y + + + L    Q   +E +   R    K  +    K  S+  ++ S V     ++
Sbjct: 404 KELYVKKLSEELGVSTQSIFSEMAKQQRNSVIKVRQAASNKNFSRNQIRKSTVVKNQEER 463

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               +  LL T+    ++           ++D++E++K + F       +   L  EI  
Sbjct: 464 LVRLQLMLLATICLDNSVYFSIKGSFDWDKFDSDEIKKAFKFAVERIESKAGILTGEILN 523

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           +L   G  E    + +           +++   D ++     +     F L  R+ E IE
Sbjct: 524 KLSP-GMAESFANIVQ-----------SQSIFEDNKKAALDIIRNIDLFGLEERKNEIIE 571

Query: 600 KQIAQVTAKGEAEKTAILI 618
            +      +G+ E     +
Sbjct: 572 LKKRSDLTEGDVELLNREL 590


>gi|90961887|ref|YP_535803.1| DNA primase [Lactobacillus salivarius UCC118]
 gi|90821081|gb|ABD99720.1| DNA primase [Lactobacillus salivarius UCC118]
          Length = 617

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 150/640 (23%), Positives = 296/640 (46%), Gaps = 39/640 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   I +L  ++ I ++I QYV   +   N     ++  CPFH EKTPSF  N+ K  +
Sbjct: 5   IPEATIDELRSNVNILDVISQYVQLHKSGKN-----WFGICPFHSEKTPSFSVNEQKQIF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120
           +CFSCH  G+   F+  L G SF ESVQR+A +A     + + + + + +      + +L
Sbjct: 60  HCFSCHRGGNVFKFIMELEGLSFPESVQRVAELANYDLGISIDNSENQNETSENGKIRKL 119

Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            +  T  +HH L N    +    YL +RGI+   IE F++G+AP++         QK + 
Sbjct: 120 YKETTKLYHHILVNTVLGEPALEYLHKRGINDDLIEEFEIGFAPENNILEAFFKEQKLYD 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPE 238
            + + ++GL I+  ++    +RF  R++FPIR + GQ IA+ GR L  + ++ KYLNSPE
Sbjct: 180 YQILRKSGLFIERQST-ELVERFNGRVMFPIRDTSGQTIAYSGRLLEKRDDAPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F+K K L+NF  A   +++              IL EG+MDV++  ++G++N ++S+
Sbjct: 239 TAIFNKRKVLFNFDKAKGIIRR----------EKEAILFEGFMDVIAAYRSGIKNGIASM 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT+ Q+  L +++  +V+C+DGD+ G  A  +A++++         V  + +    D
Sbjct: 289 GTSLTDEQIYALDRVTSHLVICYDGDNAGQNATKRALEIIEPTGKFSLEV--IKIPEKLD 346

Query: 359 PDSFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD F + YG   F +L   +    ++       ++++ N  + + E    +   I  ++D
Sbjct: 347 PDEFTKKYGSEKFVELARNDRKSPLEFYLSYYEQDKNLNNENNQLEYIRDILQEIAKVRD 406

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGK 475
              +  Y   +  R     +   ++          ++  +  +Q   +Q++ ++ + K +
Sbjct: 407 PLEQDLYLNRLAQRFNVAKENLDSQLKQIREKIFAQRAEKQEEQSYQAQQIPRTVIQKNE 466

Query: 476 LS--KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           +    K    E  LL  +++   +       + D  + +   Q +++   + F     + 
Sbjct: 467 VQHFSKAEKAERLLLYRMLHDKNVWLRI-NGIPDFNFIHENYQVIYNLSEAYFDIHDEYE 525

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             +    + E G  +++  L+             +       Q     L+L      L  
Sbjct: 526 VADFLDFINEDGLRQVVVTLEM-----------GDYADEVSEQEINDCLSLIMSQTPLED 574

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           + ++++ ++ +   + +  K   L   L  +  +    +S
Sbjct: 575 KIKKVQTEMLEAKRQNDTAKITKLTMDLISLLKEQQNAKS 614


>gi|78184868|ref|YP_377303.1| DNA primase [Synechococcus sp. CC9902]
 gi|78169162|gb|ABB26259.1| DNA primase [Synechococcus sp. CC9902]
          Length = 686

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 168/678 (24%), Positives = 294/678 (43%), Gaps = 70/678 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ +     I +++G++V   ++       ++   CPFHD+  PS   + +K F
Sbjct: 5   RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           YYCFSC   G+ + FL      SF + V  LA    +P+  VD   +++ +     +  L
Sbjct: 60  YYCFSCGAGGNSIKFLMEFQRQSFSDVVLDLARRYQLPIETVDGPQQERLRQQLSRRDKL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            R + +A+ +F   L++   +    Y  ++RG+     + F+LGYAPD    L +HL+Q 
Sbjct: 120 QRALALASGWFRSQLRSPAGQEALNYLTEQRGLSPAVQDAFELGYAPDQWDGLLKHLQQV 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G + E +  AGL++        YDRFR+R+I PI   +G+VI FGGR+L   E  KYLN
Sbjct: 180 EGLAPELLESAGLVVPRKGGNGFYDRFRHRVIVPIHDRQGRVIGFGGRSLDGSEP-KYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK+L+    A N ++K  R           ++VEGY DV++L  AG+ N V
Sbjct: 239 SPETEVFEKGKHLFGLDKASNAIRKDDRA----------VVVEGYFDVIALHAAGITNAV 288

Query: 296 SSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352
           +SLGTAL+  Q+  L +   S RIVL FD D  G+RAA +AI  V    + G   +  + 
Sbjct: 289 ASLGTALSSQQITQLCRVTDSKRIVLNFDADGAGVRAANRAIGEVEQLSLQGQLELRVLH 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+DPD F++ +G   +  L+ ++   +D   ++   +R  +  D+  +    L   +
Sbjct: 349 LPTGKDPDEFLKDHGAGDYRALLDQAPLWLDWQIEQALADRDLSRADQFQQAVSSLVALL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    +R +Y Q + +RL     +   +     R   K  R             S   
Sbjct: 409 GKLPQSAVRTHYLQRVAERLSGGQGRLALQLEEDLRQQVKGQRWHG--------RSSRHE 460

Query: 473 KGKLSKKPSLREAALLLTLINHP---AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +     +    EA LL   ++ P   A+++++ ++     +     + LW+ +       
Sbjct: 461 QPGEISQRERSEADLLRLYLHCPRHRAVIRQELRQRELEDFAIQHHRHLWAAITELEETN 520

Query: 530 KYFLPEEIHQR----------------------LCERGFGELLK------QLDRQVRDAG 561
                 E   R                      L        L       +L R      
Sbjct: 521 LGVGRLEAISRRDDAGDGLDDLDLPRLLTDQLLLENSALVSRLTPLLEPGELQRVSLAEP 580

Query: 562 LWSATTEANIVDVRQGYQQALALY-----KRFRLLSRQKEEIEKQIAQVTAKGE-AEKTA 615
           L      A +++ ++  ++   L      +R + L      +  QI Q T   +  +   
Sbjct: 581 LELLRGTAALLERQKSLKRCRHLLEAWGGQRLQTLESCIAVLIDQIQQTTEPHDTTDMEM 640

Query: 616 ILISILHEVHIQIHQIES 633
            + ++  +++    + + 
Sbjct: 641 RIQALFDDLNRDALRYQE 658


>gi|227890914|ref|ZP_04008719.1| DNA primase [Lactobacillus salivarius ATCC 11741]
 gi|227867323|gb|EEJ74744.1| DNA primase [Lactobacillus salivarius ATCC 11741]
          Length = 617

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 153/640 (23%), Positives = 297/640 (46%), Gaps = 39/640 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   I +L  ++ I ++I QYV   +   N     ++  CPFH EKTPSF  N+ K  +
Sbjct: 5   IPEATIDELRSNVNILDVISQYVQLHKSGKN-----WFGICPFHSEKTPSFSVNEQKQIF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120
           +CFSCH  G+   F+  L G SF ESVQR+A +A     + + + + + +      + +L
Sbjct: 60  HCFSCHRGGNVFKFIMELEGLSFPESVQRVAELANYDLGISIDNSENQNETSENGKIRKL 119

Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            +  T  +HH L N    +    YL +RGI+   IE F++G+AP++         QK + 
Sbjct: 120 YKETTKLYHHILVNTVLGEPALEYLHKRGINDDLIEEFEIGFAPENDILEAFFKEQKLYD 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPE 238
            + + ++GL I+  ++    +RF  R++FPIR + GQ IA+ GR L  + ++ KYLNSPE
Sbjct: 180 YQILRKSGLFIERQST-ELVERFNGRVMFPIRDTSGQTIAYSGRLLEKRDDAPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F+K K L+NF  A   +++              IL EG+MDV++  ++GV+N ++S+
Sbjct: 239 TAIFNKRKVLFNFDKAKGIIRR----------EKEAILFEGFMDVIAAYRSGVKNGIASM 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT+ Q+  L +++  +V+C+DGD+ G  A  +A++++         V  + +    D
Sbjct: 289 GTSLTDEQIYALDRVTSHLVICYDGDNAGQNATKRALEIIEPTGKFSLEV--IKIPEKLD 346

Query: 359 PDSFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD F + YG   F +L   +    ++       ++R+ N  +++ E    +   I  ++D
Sbjct: 347 PDEFTKKYGSEKFVELARNDRKSPLEFYLSYYEQDRNLNNENDQLEYIRDILQEIAKVRD 406

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGK 475
              +  Y   +  R     +   ++          ++  +  +Q   +Q++ ++ + K +
Sbjct: 407 PLEQDLYLNRLAQRFNVAKENLDSQLRQIRERIFAQRAEKQEEQSYQAQQIPRTVIQKNE 466

Query: 476 LS--KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           +    K    E  LL  +++   +       + D  + +   Q +++   + F     + 
Sbjct: 467 VQHFSKAEKAERLLLYRMLHDKNVWLRI-NGIPDFNFIHENYQVIYNLSEAYFDTHDEYE 525

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             +    + E G  +++  L+             +       Q     L+L      L  
Sbjct: 526 VADFLDFINEDGLRQVVVTLEM-----------GDYADEVSEQEINDCLSLIMSQTPLED 574

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           + E+++ ++ +   + +  K   L   L  +  +    +S
Sbjct: 575 KIEKVQTEMLEAKRQNDTAKITKLTMDLISLLKEQQNAKS 614


>gi|67924476|ref|ZP_00517899.1| DNA primase [Crocosphaera watsonii WH 8501]
 gi|67853673|gb|EAM49009.1| DNA primase [Crocosphaera watsonii WH 8501]
          Length = 637

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 165/648 (25%), Positives = 288/648 (44%), Gaps = 39/648 (6%)

Query: 1   MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           MN+P    D I+++   I I +++  YV   +R  N     Y   CPFH EKTPSF  N 
Sbjct: 1   MNFPRLHPDTIEEVKEKIDIYDIVSDYVVLKKRGQN-----YVGLCPFHQEKTPSFTVNQ 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---- 113
           SK  YYCF C   G+ + FL  +   SF + V  LA    VPL  ++P+  ++ +     
Sbjct: 56  SKQMYYCFGCGAAGNGIKFLMEIGQQSFSQVVLELANRYQVPLKTLEPEKRQEVQKELSL 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH 172
           +  L  ++ V ++FF H+L+    +    Y +++R +    I+ F LGYAP    +L  +
Sbjct: 116 KEQLYEIVAVTSNFFEHALRETLGENALNYLIEKRKLQPETIQKFNLGYAPSGWETLYRY 175

Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
            + QK +    + EAGL+         YD FR+RL+ PI+  +G+VIAFGGR+L   +  
Sbjct: 176 LVEQKRYPIALVEEAGLIKPRKKGNGYYDTFRDRLMIPIKDIQGRVIAFGGRSL-TDDEP 234

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF+KGK L+    A + ++          S   +I+VEGY D ++L  AG+
Sbjct: 235 KYLNSPETPLFNKGKTLFALDQAKSSIR----------SFDKVIVVEGYFDAIALHSAGI 284

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPR--IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV- 348
            N V+SLGTA +E QL+ L + S    ++  FD D  G++A  +AI  +   +  G    
Sbjct: 285 TNTVASLGTAFSESQLKQLLRYSDSKGVIFNFDADKAGIKATERAIKEIESLIYSGQVNL 344

Query: 349 NFVLLSRGEDPDSFIRCYG--KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
             + +  G+D D FI  +      +++LI ++   ++   ++    ++    D   ++  
Sbjct: 345 KILNIPDGKDADEFINSHDNGSEQYQELIEKAPLWLNWKIEQILMEKNLKQADNFEQVAQ 404

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            +   +N + D   R YY     + L Q   + +T +    +        +  +  + + 
Sbjct: 405 GMVKLLNQLSDSNQRSYYISYCAEILAQGDARLLTLYLKNLQTQLSKPLTKLSQKNTTKT 464

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFS 524
               L     +      E  LL   I++P   QE + +L D  + +  +E + +W  L  
Sbjct: 465 FIK-LENTAENNLLKEAETILLKIYIHYPEHRQEIFDKLEDKNLIFSLSEHRIIWQKLLD 523

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
              E    L  ++   +        L ++  +V     +    +            A  +
Sbjct: 524 IDDEYDQKLVSKLEADIAN------LSEVSEKVNKLLNFREIEQYEDSSRLSLIIDAALI 577

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
                 L +     EK+   +  + +       ++       +I Q++
Sbjct: 578 SLEKVNLEKYCNYCEKKYKTINPEEDPVNYQYYLNEYISSRQKILQLQ 625


>gi|209522727|ref|ZP_03271285.1| DNA primase [Arthrospira maxima CS-328]
 gi|209496776|gb|EDZ97073.1| DNA primase [Arthrospira maxima CS-328]
          Length = 644

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 159/647 (24%), Positives = 283/647 (43%), Gaps = 33/647 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I+++     I ++I + V   RR       D+   CPFH+EK+PSF  + S+  
Sbjct: 5   RIHSDTIQEVKDRSDIYDIISEKVVLKRRGK-----DFVGLCPFHEEKSPSFTVSPSRQM 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117
           YYCF C   G+ + FL  L   SF + V  LA    VP+    P+  ++ +     +  L
Sbjct: 60  YYCFGCGAAGNGIKFLMELDKSSFADVVLDLARRYNVPVKTESPEQHQEFQKTLSLREKL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175
             ++ +AT F+ H+L+  + +    YL   R +    I+ F+LGYAP    ++  + + Q
Sbjct: 120 YEILAIATSFYQHALRQPQGEAALEYLKFSRRLGEETIQEFQLGYAPAGWETIYGYLVEQ 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K F  E + +AGL++        YDRFR+RLI PI   +G+VI FGGR+L   E  KYLN
Sbjct: 180 KHFPVELVEKAGLIVPRKAGNGYYDRFRDRLIIPIYDIQGRVIGFGGRSL-GDEQPKYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LF KG+ L+    A   +          +     ++VEGY D ++L  AG+  VV
Sbjct: 239 SPETELFDKGRTLFCLDRAKKAI----------SQQDMAVVVEGYFDAIALHAAGINYVV 288

Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVL 352
           +SLGTAL+  Q+RLL + +   +I+L FD D  G +A  +AI ++          +  + 
Sbjct: 289 ASLGTALSINQIRLLLRYTESKQIILNFDADAAGTKATERAIGEIETLAYRGEVNLRILN 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+D D ++  + +  ++ L+ +S   ++    +    +S     E   +   +   +
Sbjct: 349 LPNGKDADEYLYIHTRHDYQDLLEKSPYFLEWQIHQIVGGKSIENVAESQRIATAMVELL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             ++D   R  Y Q+  + L Q   + I   +   R        ++Q+  +    +S L+
Sbjct: 409 RKVQDLNQRTAYIQSCAEILSQGQSRLIPMLADSLRKQINKPLVQNQQNKASDSRKSDLI 468

Query: 473 KGKLSKKP--SLREAALLLTLINHPAILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVE 528
                 +      E  LL   ++ P   QE  + L   ++ +     + LW  +    + 
Sbjct: 469 ISAQRDRTLLEKAEGLLLRIYLHCPEYRQEIIKALEAENLEFSLTNHRFLWIKISEIELS 528

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            +   P E    + +       ++   ++ +        E  I D+ +      A     
Sbjct: 529 LQEQKPREDIDLISQ--LQNFDREHSSEISEVSHLFYLNEKTINDIERPSIGIRAATASL 586

Query: 589 RLLSRQKEEIE--KQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             +  +K  ++   +  +   K   E        L+    ++ ++E 
Sbjct: 587 EWVLCEKRYLQYLDKWKKTDIKLNLELAEYYQQQLYAEQKRMKELEQ 633


>gi|82703178|ref|YP_412744.1| DNA primase [Nitrosospira multiformis ATCC 25196]
 gi|82411243|gb|ABB75352.1| DNA primase [Nitrosospira multiformis ATCC 25196]
          Length = 592

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 177/641 (27%), Positives = 293/641 (45%), Gaps = 72/641 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             + FI++LL    I ++I + V   R   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 2   ISQSFIQELLDRTDIVDVIERDVPLRRAGAN-----YSACCPFHSEKTPSFTVSPIKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTD--- 116
           +CF C   G+ + F+    G  F+E+V  LAA  G+ +P          + +  +     
Sbjct: 57  HCFGCGAHGNAIGFVMEYDGMHFVEAVSELAARIGLQVPAQQAETGSGSQSDSARVKPNG 116

Query: 117 -------LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169
                  L+  +++A  F+   LK    K    YL +RG+       F +GYAP    +L
Sbjct: 117 TEYSPGALLEAMKIAARFYREQLK--LSKNAIDYLKQRGLTGATAARFGIGYAPAGWQNL 174

Query: 170 REHLRQKGFS--EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
                 +  +  +  +++AGL+++GD     YDRFR+R++FPI + +G ++ FGGR L K
Sbjct: 175 HTSFPGQPDNAQKRLLVQAGLMVEGDGG-KCYDRFRDRIMFPIVNLKGMIVGFGGRVLEK 233

Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
           GE  KYLNSPET LF KG+ LYN FGA   ++           +  +I+VEGYMDV++L 
Sbjct: 234 GEP-KYLNSPETPLFQKGRELYNLFGARRAIR----------EAGKVIVVEGYMDVVALS 282

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           Q G++  V++LGTA T Y ++ L + +  IV CFD D  G +AA++A++  L  L  G  
Sbjct: 283 QHGIEYAVATLGTATTPYHIQKLLRQTDNIVFCFDADSAGKKAAWRALEDSLAQLADGKS 342

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
           + F+ L  GEDPDS+IR +G++AFEKL+ ++LPL   L++  +      + + RA+L   
Sbjct: 343 IGFLFLPEGEDPDSYIRNHGRSAFEKLLEQTLPLSVFLFRELSARTDLKSSEGRAKLVQD 402

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
            K  +  +    L     + + + +  L ++ +       R      R +  +       
Sbjct: 403 AKPLLARVAAPGLALMLVKRLAE-ISGLSERELEGILKIRRVTAFPVREKPSRPKPVSPY 461

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           +                  LL  L+ HPA +Q+  +EL     +  +     + L     
Sbjct: 462 E-----------------WLLQILLYHPAYIQKLDRELLAYDQEYEKEVAALAALVEFID 504

Query: 528 EQKYFLPEEIH----QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
              +     +            +  +L+Q   +               +D+   +  A+A
Sbjct: 505 VHPHMGEGTLIPLMTVHFRASPYRAILEQAASKTLGWD--------GELDLEAEFAGAMA 556

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
              R   + R     ++++A +  K  +  T      L  +
Sbjct: 557 ---RLHEMKR-----KQRMAVLHNKSLSALTPEEREELQRM 589


>gi|326773169|ref|ZP_08232452.1| DNA primase [Actinomyces viscosus C505]
 gi|326636399|gb|EGE37302.1| DNA primase [Actinomyces viscosus C505]
          Length = 671

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 144/684 (21%), Positives = 264/684 (38%), Gaps = 72/684 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ I+ +     + +++ ++V           G     CPFHDE+TPSFH     G++
Sbjct: 5   IRREDIEAVRERARLEDVVSEHVTLKSAG----VGSLKGLCPFHDERTPSFHVRPQLGYW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLIR 119
           +CF C   GD ++F+  +    F E+V+ LA   GV L   +    ++      +  L+ 
Sbjct: 61  HCFGCGEGGDVITFIEKIHHLGFAEAVEYLADRTGVQLRYEEGGAVRRGVEPGTRQRLMD 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              +A  +F   L     +    +L  RG D HA   F +GYAP    +L  +LR  G++
Sbjct: 121 ANRLAEAWFREQLATPEAQPGRDFLTSRGFDRHAAAHFGVGYAPAGWDNLARYLRSSGYT 180

Query: 180 EEKIIEAGLLID-GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSP 237
           E +++++GL    G +    YDRFR RLI+PIR   G  + FG R L  + +  KYLN+P
Sbjct: 181 EAELVDSGLCSRGGQDGRRVYDRFRGRLIWPIRDVTGATVGFGARKLSEEDQGPKYLNTP 240

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK + LY    A   + +S R          I++VEGY DV++   +GV   V++
Sbjct: 241 ETPVFHKSQVLYGLDLAKREVARSQR----------IVVVEGYTDVMAAHLSGVTTAVAT 290

Query: 298 LGTALTEYQLRLLWK--------------------LSPRIVLCFDGDDPGLRAAYKAIDL 337
            GTA     +R++ +                        ++  FDGD  G +AA +A   
Sbjct: 291 CGTAFGADHVRVVRRLLGDVDDPAAGVVTGQGREARGGEVIFTFDGDAAGQKAALRAYAE 350

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397
                    +    +   G DP       G +   +L+   +PL + + +    +   +T
Sbjct: 351 DQRFAT---QTFVAVDPGGLDPCDLRMKEGDSGIPRLLSRRVPLFEFVIRTSLSHLDLDT 407

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            + R          +  I+D+ L+  Y++ +   L     +         R   + +  R
Sbjct: 408 SEGRVRGLRSAAPVVAGIRDRALKREYTRRLAGWLGLPDAEVHAAVQAASRRGAQPSTAR 467

Query: 458 DQKGPSQRLMQSSLVK-----GKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYD 511
             + P+                 ++      E   L  +I  P    +    EL    + 
Sbjct: 468 GGQWPADETAGPDAAAPVRGLPPVTDPVEQLEREALAVIIQFPVAAHQAGADELGADSFG 527

Query: 512 NNELQKLWSFLFSDFV-------------------EQKYFLPEEIHQRLCERGFGELLKQ 552
               + ++  + +                      E +        Q++ +   G +   
Sbjct: 528 QLTHRAVYEAVAAAGGTGEVPGLVQQAVAAGMGEQEAQRRATLRWLQQVRDGAIGLVEAA 587

Query: 553 L-DRQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           + +  V    L +       VD    + Y + +        ++R+  E+  +  +++ + 
Sbjct: 588 ITEVAVAPLPLPTIRGRGTEVDASGLERYAKGVLDSLAVMGINRRLVEMRSRHRRMSPQ- 646

Query: 610 EAEKTAILISILHEVHIQIHQIES 633
             E    L S +  +  +  QI  
Sbjct: 647 -EEGYRELFSQIAALEQRRMQIRQ 669


>gi|307701758|ref|ZP_07638772.1| DNA primase [Mobiluncus mulieris FB024-16]
 gi|307613016|gb|EFN92271.1| DNA primase [Mobiluncus mulieris FB024-16]
          Length = 688

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 150/705 (21%), Positives = 255/705 (36%), Gaps = 99/705 (14%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I+ +   IPI  ++G YV   R   N         CPFHDEKTPSFH       
Sbjct: 4   KIDPDDIQKVREAIPIEQIVGDYVTLQRGGVN----SMKGLCPFHDEKTPSFHVTLGANL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           ++CF C   GD + F+  + G +F+E+++ LA  AG+ L  V+       +     +  L
Sbjct: 60  WHCFGCGEGGDLIDFVQRIEGLAFLETIEFLANKAGIVLHYVEGGEAGSTRVEPGTRQRL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +    VA DFF   L +   +    +++ R   S     F +GYAP +  +L  +LR  G
Sbjct: 120 LECNRVAQDFFTAQLLSPEAQDARDFVEGRAFTSEDAARFGMGYAPKAWGNLLGYLRDSG 179

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLN 235
           F++ +I   GL      S   YD FR+R+ +PIR + G V+ FG R L   +    KY+N
Sbjct: 180 FTDAEITTVGLAK--MGSRGLYDVFRDRVTWPIRDTTGAVLGFGARRLDDSDPENPKYIN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +PE+ ++HK   LY    A   + +  R           ++VEGY DV++   +GV   V
Sbjct: 238 TPESPIYHKSSVLYGLDLARKTIGEQRR----------CVIVEGYTDVMAAHLSGVTCAV 287

Query: 296 SSLGTALTEYQLRLLW--------------------KLSPRIVLCFDGDDPGLRAAYKAI 335
           ++ GTA T    R++                          ++  FDGD  G +AA KA 
Sbjct: 288 ATCGTAFTGEHARIVRRLIGRPADGASSLRMPDGSAPRGGEVIFTFDGDAAGQKAALKAF 347

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
                      +    +   G DP       G  A   L+    PL + + K        
Sbjct: 348 RTDQDFAA---QSFVAVAGEGLDPCDLRMRRGPGAVRDLVDSRRPLFEFVLKTIIGGFDL 404

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  + R             I+D+ LR  Y   +   L    ++     +  G++ +  ++
Sbjct: 405 DNSEGRVAALRAAAPIAAEIRDRALRQEYVSRLAGWLGVNSREAWETVNAAGQWLRSRSQ 464

Query: 456 HRDQKGPSQR-----------------------------------LMQSSLVKGKLSKKP 480
                G S+R                                   +    L  G  +   
Sbjct: 465 EARGAGLSRRSGGSNGYGGGSVGGGFMSREGNPGGTGNAPALLPVMPPVRLDPGVDTDPV 524

Query: 481 SLREAALLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLF-------------SDF 526
              E   L+  ++ PA+  E  +  L+   +    L+ ++  +                 
Sbjct: 525 WRLERDALVAALHFPALTGETHFDLLSPQGFTQPTLRAIFEVIMAAGGVAEYARLQTEAA 584

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                  P     R       +    L   V D         +   D    +   +    
Sbjct: 585 ASGTSDPPRAALNRWAAAVKSQAGSALGGVVTDLATRPVPVRS--EDEAAPWIHEVMDAL 642

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
               L+R+   +  ++ ++ A    E+   + + L E+  Q+  +
Sbjct: 643 ERLYLNREMAGLRAKLNRLDAG---EEKNAVFAQLMELETQVRAL 684


>gi|167753250|ref|ZP_02425377.1| hypothetical protein ALIPUT_01522 [Alistipes putredinis DSM 17216]
 gi|167659181|gb|EDS03311.1| hypothetical protein ALIPUT_01522 [Alistipes putredinis DSM 17216]
          Length = 658

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 157/665 (23%), Positives = 281/665 (42%), Gaps = 63/665 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ I  +     I ++IG+YV   R+  N     Y ACCPFH+EKTPSF  + SKG Y
Sbjct: 2   IDRETIDRIYAAANIVDIIGEYVTLKRKGVN-----YQACCPFHNEKTPSFVVSPSKGVY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CF C   G+ ++FL      ++ E+++ +A   G+ +      P+   +   +  +  +
Sbjct: 57  KCFGCGKGGNAVTFLMEHENMTYPEALKAVAKRYGIEVREKEMTPEEVARNDNRESMFVV 116

Query: 121 IEVATDFFHHSLKNARDKR---LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              A ++F + L +  +     + Y+  +RG     I+ F LG+ P     +       G
Sbjct: 117 NSWAAEYFSNYLLHETEGMSVGMTYFRQKRGFSDATIKKFGLGFCPARGDRMSWAALAAG 176

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNS 236
           + EE ++  GL I  D+  + +DRFR R++FP+ +  G+V+AFGGRTL   +SV KY NS
Sbjct: 177 YKEEFLVSTGLSIKRDDG-SLFDRFRERVMFPVHNISGRVVAFGGRTLRTDKSVAKYQNS 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ ++ K + LY  F A   +              F I+VEGY DV+S+ QAGV+NVV+
Sbjct: 236 PESEIYSKKRELYGLFFAKKAI----------QQYDFAIMVEGYTDVISMHQAGVENVVA 285

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S GT+LT  Q+RLL + +  I + +DGD  G+ A+ + ID++L     G  V  VLL   
Sbjct: 286 SSGTSLTTEQIRLLGRFTRNITVIYDGDSAGIHASLRGIDMILRE---GMNVRVVLLPPE 342

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPDSF R +     ++ I  +         +     +   P ++A L   +   I  I 
Sbjct: 343 DDPDSFARTHTAAEVQEYIRANEEDFLTFKAKLLLKDAAGDPIKKAALINDMVQSIVQIP 402

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW----------KKNARHRDQKGPSQRL 466
           D   R  Y +     +       I E                  ++ +     +  +QR 
Sbjct: 403 DPIQRSVYIKECARIMDIDENLLIAEVGRKRMASTGDREAEEFVRRQSARFRAEQTAQRP 462

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ-------ELADIRYDNNELQ--- 516
                 +          E  L   L+ +     +  +        +A++ +   +     
Sbjct: 463 ETVFAGQVTGGSSAEALERELTRYLLKYGHCSFDFKEGRNVVQYNVAEVIFGELDADGLE 522

Query: 517 ---KLWSFLFSDFVE-------QKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWS 564
              ++++ +   + E                            +  L  +     + LW 
Sbjct: 523 FQNRVFNEILRVYREQWCALGLGVEVPIHHFINHSDPEVCNVSVDILTSEDHYVPSELWR 582

Query: 565 ATT---EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                 E++   +  G  +A+ LY + +++ R   E+ +++       +  +   ++  L
Sbjct: 583 RKEVHVESDAEMLAVGVPKAVTLY-KSKVIERMSRELREKLQDENLTDD--EMQDIMQRL 639

Query: 622 HEVHI 626
             ++ 
Sbjct: 640 SNLNR 644


>gi|293379527|ref|ZP_06625669.1| DNA primase [Enterococcus faecium PC4.1]
 gi|292641836|gb|EFF60004.1| DNA primase [Enterococcus faecium PC4.1]
          Length = 613

 Score =  341 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 151/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+ +     I  +IGQYV   +   N     Y   CPFH+E+TPSF   + K  
Sbjct: 4   RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           ++CF C   G+  +FL  L G SF E+V ++A    +PL          ++  E     L
Sbjct: 59  FHCFGCGKGGNVFTFLQELEGLSFPEAVIKVADFEQIPLEDQWRQRTLAVQNPESATGKL 118

Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I   E A + +HH  L     +    YL  RG+    IE F +G+AP+ R  L++  + +
Sbjct: 119 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231
            FS E +  +GL +   +     DRF  R++FP+R+ +GQ I F GR L+       +  
Sbjct: 179 SFSNELLERSGLFV-AHDDGRMSDRFYQRVMFPLRNPQGQTIGFSGRWLAPEKGQEKDQP 237

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF+K + L+N   A + ++K          +  ++L EG+MDV++  QAG+
Sbjct: 238 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEVLLFEGFMDVIAAWQAGI 287

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           +  ++S+GT+LT  Q++ + KL+  +V C+DGD+ G  A  + I+L+  +   G  V  V
Sbjct: 288 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSRLGLSV--V 345

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410
           ++    DPD ++R YG+ +F++L+      V     R  +       ++   E    L  
Sbjct: 346 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLENEKDKIEYLEELLV 405

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +     +  Y   +    +   +    +     R  ++N +   +   +Q   Q +
Sbjct: 406 ELSRVVSPIEQDMYLSQLSTEFRVSRETIQKQLRELRRTNQQNRQEPQENQHTQTKRQET 465

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
             K +   +    E  LL       ++     +   + ++ ++   +++    +   +  
Sbjct: 466 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 523

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            F   E    L +     L+ +++             E++  ++     Q L        
Sbjct: 524 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 571

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           L+ +    ++   +    G  +    L   +  +  Q+ Q +
Sbjct: 572 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 613


>gi|282878196|ref|ZP_06286992.1| DNA primase [Prevotella buccalis ATCC 35310]
 gi|281299614|gb|EFA91987.1| DNA primase [Prevotella buccalis ATCC 35310]
          Length = 659

 Score =  341 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 149/675 (22%), Positives = 278/675 (41%), Gaps = 67/675 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  ++ +     I +++ ++V   +   N     Y   CPFH+EKTPSF  + ++G  
Sbjct: 2   IDRATVERIKDTANIVDVVSEFVTLRKSGAN-----YKGLCPFHNEKTPSFIVSPARGTC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   G+ + F+      ++ E+++ LA    + +       +  +++  +  +  +
Sbjct: 57  HCFGCGKGGNAIGFIMEHEQMNYPEALRWLARKYHIEIHEREMTDEERREQSERESMFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E    +F   L N  D +     Y   RG     I  F+LGY    R  L      KG+
Sbjct: 117 NEWTAGYFSDLLHNHPDGQAIGMQYFRSRGFRDDIIRKFQLGYDLPDRTRLASTAIGKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
            EE +++ G+    +      DRF  R+IFP     G+V+ FGGR L    KG + KY+N
Sbjct: 177 QEEFLLKTGICYKTERGD-LIDRFSGRVIFPWIGLNGKVVGFGGRVLDSRTKGVNQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP + ++ K + LY  + A   + K            ++ +VEGY DV+S+ Q GV+NVV
Sbjct: 236 SPASEIYQKDRELYGIYQAKKAIAK----------EDWVYMVEGYTDVISMHQCGVENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ +Q+ +L + +  I L +DGD  G+ AA++ +D++L     G  V  +LL  
Sbjct: 286 ANSGTALSMHQIHILHRFTSNITLLYDGDAAGIHAAFRGMDMLLSE---GMNVKILLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +    F+  I +   +  + +K +    +   P +R+E    + + I  +
Sbjct: 343 GDDPDSFARKHSADDFKAYIDKHQ-VDFIQFKTDMLVSNVADPFKRSEGINSIISSIAVV 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK----NARHRDQKGPSQRLMQSSL 471
            +Q LR  Y Q    R+    Q  I   + Y R  +       +    +      +    
Sbjct: 402 PNQILRDTYVQDCARRIGMSEQTLINTMNRYIRENRGARTTEQQRTAMQAAQSVPVSHPT 461

Query: 472 VKGKLSKKPSLREAALLLTLINHPA-----------------ILQEQYQEL---ADIRYD 511
              K   + S  E  L+  +I                      + +    +     ++  
Sbjct: 462 PSAKPMAQASKVELMLIQLVIRKGEQLIYEGVEDDNHNVVNFTVAQYIDYILNGDQLQLG 521

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV------------RD 559
           N   +++ S   S   E+ +   +       +    +L  +L                  
Sbjct: 522 NELYRRILSEAVSHSGEEGFVAEQYFVHH-DDIEISKLASRLSMDAYQVMETQKPASETK 580

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
                        D+R      +  Y R   + ++ +++ ++IA+     +AE+   L+ 
Sbjct: 581 YVDEEQLAREAQEDLRNHTIHLVKDY-RMDYVEQRLKDLMREIAEA--SNDAERMQQLML 637

Query: 620 ILHEVHIQIHQIESQ 634
              ++H   + +  Q
Sbjct: 638 EYKDMHQIRNALAKQ 652


>gi|294139650|ref|YP_003555628.1| DNA primase [Shewanella violacea DSS12]
 gi|293326119|dbj|BAJ00850.1| DNA primase [Shewanella violacea DSS12]
          Length = 575

 Score =  341 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 173/628 (27%), Positives = 295/628 (46%), Gaps = 56/628 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+  I I + I   V   +   N       ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELVARIDIVDQIDAKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   G+ + F+       FI++++ LA   G+ +P      +K+++ +  DL +
Sbjct: 56  FYHCFGCGAHGNVIDFVMEYDRLDFIDAIEELAGQLGLEVPREQGTGKKRDEGLSRDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A+  F   L+  +DK+    YL+ RG+    I  F +G+AP+    L    RQ   
Sbjct: 116 LMEEASRHFQSQLRQDKDKQKVLDYLEHRGLSEKVIADFNIGFAPEGWDGLLSRYRQSQD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S++K++ AG++I+ D+    YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 176 SQDKLLTAGMVIENDSGRR-YDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +   R          +++VEGYMDV++L Q  V   V+SL
Sbjct: 234 TPIFHKGYELYGLYELKQRHRDPQR----------VLIVEGYMDVVALAQFDVDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T  Q +LL + +  ++ C+DGD  G+ AA++A++  L  L PGN+V F+ L +GED
Sbjct: 284 GTATTAEQFQLLLRSAKEVICCYDGDRAGVEAAWRALETALPLLKPGNQVKFMFLPQGED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD+ +R  GK AFE  I ++  L + L++   +    +       L     + I  ++D 
Sbjct: 344 PDTMVRQVGKEAFESQIDDAKALPEFLFETLAKRHGADKGT----LAKQAISLIEKVQDT 399

Query: 419 KLRYYYSQAIRDRLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L+    + +  +L      +   +     +      +++  KG    L           
Sbjct: 400 VLQSLLLENLAYKLGMNGADELRRKLGFSSKKQGHTLQNKALKGRGTPL----------- 448

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                     +  L+ HP         L +       L+ +        +        ++
Sbjct: 449 -------RLAIALLVQHP--------MLGEGLPVQPALKHIKMAGVDLLIHLLDITRVQV 493

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                     E  +   +      L     +    +++Q +++ L ++   + + ++ +E
Sbjct: 494 KN---SAQLLEQYRDAPQLSTLKKLTRWEHQVADENLQQEFRKTL-IWLNNQYIEQRYQE 549

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVH 625
           +   + Q   K E  + + LI+++  ++
Sbjct: 550 L--SLKQNHTKEERIQLSKLITVIQGLN 575


>gi|269469020|gb|EEZ80584.1| DNA primase [uncultured SUP05 cluster bacterium]
          Length = 611

 Score =  341 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 165/629 (26%), Positives = 279/629 (44%), Gaps = 38/629 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              DFI DL   + I +LI + V   +        DY ACCPFH+EKTPSF     K +Y
Sbjct: 4   INNDFINDLSNQVDIVDLINRRVPLKKAGK-----DYKACCPFHNEKTPSFTVVADKQYY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G+ + F+      +FIE+V+ +A  +GV + V D      +        L++
Sbjct: 59  HCFGCGENGNAIDFVMKFDHLNFIEAVEVVAGESGVSV-VYDQNARPVDPKMKRYRDLMQ 117

Query: 123 VATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             ++F+   LK +  K+      + RG+     + F LG+AP    SL +H +      +
Sbjct: 118 EVSEFYQSQLKKSPAKKKVVTYAKNRGLTGEIAKRFDLGFAPPGWSSLFDHFKHNLEVVK 177

Query: 182 KIIEAGLLI-DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            + E GLL+   +     YDRFR+RL+FPI +++G +IAFGGR LS+ +  KYLNSPET 
Sbjct: 178 DLEEMGLLVAKKEKKGEYYDRFRDRLMFPIHNAKGDIIAFGGRVLSEEDKPKYLNSPETP 237

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHK + LY    A  + +          S  +I++VEGYMDV++L Q+G+   V++LGT
Sbjct: 238 IFHKSRELYGLHHARKHSR----------SIDYILVVEGYMDVVALHQSGITCTVATLGT 287

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T   L+ L + +  I+ CFDGD  G  AA+KA+ + L  +  G  V F+ L  GEDPD
Sbjct: 288 ATTPEHLQTLSRTTDTIIFCFDGDRAGRAAAWKALQIALPVIKSGLIVKFLFLPDGEDPD 347

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           + ++     AFE  I +S PL   L+        F+T + +      +   I  ++    
Sbjct: 348 TLVKKESSKAFEARIEKSHPLSKFLFDHIKVEVDFDTIEGKTLFLEKVSILIQQVEYDTY 407

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    + +   + Q  ++     S       K +      G    +            KP
Sbjct: 408 QQQLIEGVAQEVGQSVEQVKRVLSQQKLPPLKPSTPAPIVGEEMPVPDFPDFPDFSLSKP 467

Query: 481 SLRE--------AALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKY 531
            + +        + ++  L+N+P++     +  + D++  + +    ++ L       + 
Sbjct: 468 IVVKNNNAKGLMSKMITLLLNYPSLSDGTVEVRIRDLKKMDKK----FAVLLELTRSSQM 523

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              E       E        +     R   L       + +  +  +  AL + ++    
Sbjct: 524 IEQE---NNFQEELLKPFKNKTTTYNRLGQLCIMEPHLSEMQAKDEFLAALDVSEQ---- 576

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            ++  + +  IA      E +K    I  
Sbjct: 577 QQKNTQNKASIATANTIEERKKLMESIQK 605


>gi|210620869|ref|ZP_03292286.1| hypothetical protein CLOHIR_00229 [Clostridium hiranonis DSM 13275]
 gi|210155081|gb|EEA86087.1| hypothetical protein CLOHIR_00229 [Clostridium hiranonis DSM 13275]
          Length = 620

 Score =  341 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 164/633 (25%), Positives = 298/633 (47%), Gaps = 26/633 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN  ++ I+++     I+++IG Y+       N     Y A CPFH EKTPSFH + +K 
Sbjct: 12  MNDMKEIIEEIKARCDIASVIGDYIKIQPSGQN-----YKALCPFHVEKTPSFHISTAKQ 66

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIR 119
            Y CF C   GD ++F+  +    F+++V+ LA   G+ +    D + ++K ++      
Sbjct: 67  VYKCFGCGEGGDVINFVMKIENLDFMDAVRLLANRCGIDINFNIDEETKQKIELSKKYQD 126

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGF 178
           +   A  F+  +L  +++ R + YL  RG+D   I+ F LGY+ DS  SL ++ + +KG+
Sbjct: 127 IHTEAARFYFSNLVKSKN-RGYDYLRNRGLDDKTIKRFGLGYSQDSWNSLMDYLIEEKGY 185

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S+E+++E GL+     +   YD+FRNR++FPI   RG VI FGGR L      KYLNSP+
Sbjct: 186 SQEELLECGLIGKSTKTDKYYDKFRNRVMFPIFDYRGNVIGFGGRVL-DDSLPKYLNSPD 244

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F+K  NLY    A   L           SS  +ILVEGYMD++SL Q G+Q  V++L
Sbjct: 245 TLIFNKRHNLYGLNFARKNL-----------SSRTVILVEGYMDLISLYQYGIQIAVATL 293

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT  Q RL+ + +  +++ +D D PG +A+ +AID+    +  G  V  + L   +D
Sbjct: 294 GTALTSQQARLIKRYADNVIISYDSDGPGTKASLRAIDI---LVEAGLSVKVLDLKDAKD 350

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD ++R YG   + K + +++P +             +   +  +      N I  +K  
Sbjct: 351 PDEYVRKYGTDEYRKAMKDAVPRIKFKIDNLKSYFDLSKDQDNIKFAQEAVNIIKQLKSP 410

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
               YY + + + +Q        E  G     +  +  +     +++  +       +  
Sbjct: 411 VEIDYYIKYLSEIVQLDEDAVKREIYGKSYSSRNLSNGKFNNKFNKKEEKPIEKMDAIQH 470

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              L E  L+  ++N PA  ++   ++ +      + +K+ ++L S    +K   P+E+ 
Sbjct: 471 GEELTEIKLMKIMMNIPAAREKVLLKIDEKELLMEDSKKILNYL-SKIDSEKIVEPDEL- 528

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           + + +     L K     +    +         V      +    L  +   L  + + +
Sbjct: 529 EGINDEYIKSLKKTSLESINTKNMKEIEETVKSVRRNSLKKTIDNLRIKQEELGAKSKIL 588

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            +       + + E   + +    E++ ++  +
Sbjct: 589 AESDKDAAKELDLEIMNLALQS-VELNKRLRNL 620


>gi|119488472|ref|ZP_01621645.1| DNA primase [Lyngbya sp. PCC 8106]
 gi|119455283|gb|EAW36423.1| DNA primase [Lyngbya sp. PCC 8106]
          Length = 666

 Score =  341 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 164/646 (25%), Positives = 284/646 (43%), Gaps = 38/646 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I+++     I +++ + V   R+       D+   CPFH+EK+PSF  + +K  
Sbjct: 5   RIHPDTIEEVKQRADIYDVVSERVVLKRQGK-----DFAGLCPFHEEKSPSFTVSTNKQM 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117
           YYCF C   G+ + FL  L   SF + V  LA    V +    P+  ++ +     +  L
Sbjct: 60  YYCFGCGAGGNAIKFLMELDKSSFADVVLDLARRYQVSVKTESPEQRQELQQKLSLREQL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175
             ++ +AT F+ H+L  ++      Y   +R + +  I+ F+LGYAP     L ++ + Q
Sbjct: 120 YEILAIATSFYQHALSQSQGIEALDYLTSKRRLSTETIQHFQLGYAPKGWEMLYDYLVEQ 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K F    + +AGL++        YDRFR+RL+ PI   +G+VI FGGRTL   E  KYLN
Sbjct: 180 KHFPVHLVEQAGLILPRKKGNGYYDRFRDRLMIPIHDIQGRVIGFGGRTL-SDEQPKYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LF KGK L+    A   + K  +           ++VEGY DV++L  AG++NVV
Sbjct: 239 SPETELFDKGKTLFGLDKAKTAISKQDKA----------VVVEGYFDVIALHAAGIENVV 288

Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVL 352
           ++LGTAL+  Q+R L +   S +I+L FD D  G +AA +AI ++         ++  + 
Sbjct: 289 AALGTALSMTQVRQLLRYSESKQIILNFDADTAGAKAAERAIGEIENLAYQGSVQLRILN 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           LS G+D D F+       ++ L+  +   +D    +    R      E  ++  ++   +
Sbjct: 349 LSDGKDADEFLYSSSSEDYQNLLENAPLWIDWQISQMLVGRDLTKVVEAQQVAQNMVKLL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD--QKGPSQRLMQSS 470
             I+    R  Y Q+    L Q   + I       +   +  R RD  +   S  +    
Sbjct: 409 QKIEQDLQRSQYIQSCAAILSQGEVRLIPFLVKTLQKQLQKLRRRDEFKAEESSDIELPV 468

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-Q 529
           L +  L  +       + L    H   + E  + + ++++  +  + LW  +       +
Sbjct: 469 LAEQSLLPEAEALLLRIYLHCSQHRQTIVEALE-IGNLQFSFSHHRFLWRNILEIEENSE 527

Query: 530 KYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYK 586
                 ++  RL +    F +  +Q+D  +       A      +++R       L L +
Sbjct: 528 GAIESIDLISRLQDHLLEFPDQQQQIDHLLYLDDKPIANLRRTPLEIRAAIASMELTLCR 587

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           + R L+                   E + +    L   H +I ++E
Sbjct: 588 KRRSLASHM------WQNTDCTENLELSKMYHEELLAAHQRIKELE 627


>gi|309388944|gb|ADO76824.1| DNA primase [Halanaerobium praevalens DSM 2228]
          Length = 597

 Score =  341 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 161/603 (26%), Positives = 276/603 (45%), Gaps = 29/603 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            Y  +FI +L  ++ I +LI  Y++  +         Y   CPFH EKTPSF  N    F
Sbjct: 3   RYSDEFINELKENVDIVDLISDYLELKKTGN-----RYKGLCPFHSEKTPSFFVNPDNNF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   GD ++FL  +   +F+E+++ LA  +G+ LP ++ +  K  K +  +    
Sbjct: 58  YHCFGCGAGGDSINFLMEIENLTFVETIKMLAERSGMELPNLNDQQRKHYKKRERVFSAN 117

Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           ++   F+++ L      K+   YL +RG     IE F+LGYA D    L   L++KGFS 
Sbjct: 118 KLTAQFYNYLLTETNMGKKAFNYLKKRGFSKKEIEDFQLGYAADEWQLLINFLQKKGFSL 177

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238
           + + +AGL I    + + YD+FRNR+IFPI ++RG+VIAFGGR L   +S   KYLNSPE
Sbjct: 178 DLLEKAGL-ISKSKNNSYYDKFRNRVIFPIFNNRGEVIAFGGRILKSEKSYGPKYLNSPE 236

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K KNLY    A   ++            +  I++EGY DV+   + G +N ++SL
Sbjct: 237 TPIFSKKKNLYGLHLAKETIR----------EKNSCIIMEGYTDVIQAHKNGFKNSIASL 286

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T+ Q  L+ + +    + +D D  G +A  + +D+       G  V  + L +G D
Sbjct: 287 GTAFTKEQAELIKRYAENAYIAYDADTAGNKATLRGLDI---LSQTGINVQVIQLEKGSD 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD  ++  G + F   I  ++ L+D   +   +N+  + P  R ++   +   +  ++  
Sbjct: 344 PDQLLKNEGASTFNNYIENAVNLIDFKIEMIIQNKDISDPGIRKKVLRSIVELLTEVEAD 403

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +    +     +    E +      K    +R +    ++             
Sbjct: 404 LEREIYLERAAAKTNFKAEVLAKEVAKELEKKKIKEPNRAKTKKRKQKKFDLY---SQLS 460

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E  +L   I++PA+ ++   E+    ++    Q L  +LF   +       E+I 
Sbjct: 461 YYQKVEEEILAHFISNPALREKIVNEVTAKDFNGRTAQ-LAEYLFQGKIISNSVKLEKIK 519

Query: 539 QRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             L         E+L + D  + +  +    +  N   V    ++   L ++  L   + 
Sbjct: 520 DSLEAELLSYWSEILVKQDNSLTENHILELASYLNSKSVCNNKEKLCTLLRKKELSLDKL 579

Query: 596 EEI 598
             I
Sbjct: 580 NRI 582


>gi|227551145|ref|ZP_03981194.1| DNA primase [Enterococcus faecium TX1330]
 gi|257896231|ref|ZP_05675884.1| DNA primase [Enterococcus faecium Com12]
 gi|227179707|gb|EEI60679.1| DNA primase [Enterococcus faecium TX1330]
 gi|257832796|gb|EEV59217.1| DNA primase [Enterococcus faecium Com12]
          Length = 627

 Score =  341 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 151/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+ +     I  +IGQYV   +   N     Y   CPFH+E+TPSF   + K  
Sbjct: 18  RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 72

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           ++CF C   G+  +FL  L G SF E+V ++A    +PL          ++  E     L
Sbjct: 73  FHCFGCGKGGNVFTFLQELEGLSFPEAVIKVADFEQIPLEDQWRQRTLAVQNPESATGKL 132

Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I   E A + +HH  L     +    YL  RG+    IE F +G+AP+ R  L++  + +
Sbjct: 133 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 192

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231
            FS E +  +GL +   +     DRF  R++FP+R+ +GQ I F GR L+       +  
Sbjct: 193 SFSNELLERSGLFV-AHDDGRMSDRFYQRVMFPLRNPQGQTIGFSGRWLAPEKGQEKDQP 251

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF+K + L+N   A + ++K          +  ++L EG+MDV++  QAG+
Sbjct: 252 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEVLLFEGFMDVIAAWQAGI 301

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           +  ++S+GT+LT  Q++ + KL+  +V C+DGD+ G  A  + I+L+  +   G  V  V
Sbjct: 302 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSRLGLSV--V 359

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410
           ++    DPD ++R YG+ +F++L+      V     R  +       ++   E    L  
Sbjct: 360 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLENEKDKIEYLEELLV 419

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +     +  Y   +    +   +    +     R  ++N +   +   +Q   Q +
Sbjct: 420 ELSRVVSPIEQDMYLSQLSTEFRVSRETIQKQLRELRRTNQQNRQEPQENQHTQTKRQET 479

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
             K +   +    E  LL       ++     +   + ++ ++   +++    +   +  
Sbjct: 480 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 537

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            F   E    L +     L+ +++             E++  ++     Q L        
Sbjct: 538 KFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 585

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           L+ +    ++   +    G  +    L   +  +  Q+ Q +
Sbjct: 586 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 627


>gi|269926940|ref|YP_003323563.1| DNA primase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790600|gb|ACZ42741.1| DNA primase [Thermobaculum terrenum ATCC BAA-798]
          Length = 623

 Score =  341 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 153/645 (23%), Positives = 275/645 (42%), Gaps = 63/645 (9%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I+++   I I  +IG +V+  R  +      + A CPFH EKTPSF     +  Y+CF 
Sbjct: 8   IIEEIKSRIDIVEVIGSFVELRRTGS-----RFKALCPFHQEKTPSFIVFPERQTYHCFG 62

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126
           C   GD +SFL      SF E+V++LA  AGV      PK +  +     L  + ++A  
Sbjct: 63  CGKSGDVISFLMETQNLSFREAVEQLAQKAGVRFEPEKPKEKSPQSEIDSLYEINKLAAR 122

Query: 127 FFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
            F+H L N++       YL +RG+     E + LGYAPDS     + L+++GFSE+ I +
Sbjct: 123 LFNHLLMNSKAAEHARDYLKDRGLSPATWEEWMLGYAPDSWDVTSKFLQKRGFSEDLIFK 182

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
           AGL ++       YDRFR+RL+FPI+   G+ + FGGR + +G   KY+N+PET +F KG
Sbjct: 183 AGLTVERTGG-GYYDRFRDRLMFPIKDKDGRFVGFGGRAIGEG-IPKYMNTPETPIFTKG 240

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
           +++Y    A + +++S    V       I          +  Q G +NVV++LGTA+T  
Sbjct: 241 EHIYGIDVAKSAIKESNLVVVVEGYVDVI----------TAHQYGFRNVVATLGTAITPS 290

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL------------------IPGNR 347
            ++LL K++  I L  D D  G  AA +  +++   +                       
Sbjct: 291 HVKLLSKMAANICLALDADTAGQAAALRGWEVLRDSIRRRSIPIRSKGRVISSDSKLEVL 350

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
           V    L +GEDPD+ IR      + ++I  +  ++D  ++         TP  + +    
Sbjct: 351 VKIATLPKGEDPDTLIRKDPSE-WARIIEGAKTVIDHFFEIVERGYDLKTPQGKTQAIAD 409

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
           L   I  + +   R +Y   +   +     +         +   +             + 
Sbjct: 410 LAPVIGDLGNPIERAHYESRLAKLVGVDENEIHLHVVQARKQSSRPGGGEAAPINLNSVS 469

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           Q               E  +L  LI +P +L    ++  +   +N+  +++   + +   
Sbjct: 470 Q---------------EEMVLALLIRYPRLLGNLPEDFIN-DMENSPNKEILEKMQTLGH 513

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E     PE + + + +    + +++L              E    +      + + L +R
Sbjct: 514 E--KLTPESLLESV-DESLRQHVERLVALAST------QPELFSNEQLLELNKKINLIRR 564

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            R L     +    + +   +G+ E    L+ ++  +  ++ Q +
Sbjct: 565 QR-LRDLLHQHSLLLKEAMEQGDEESVRSLLQLVPTLASELRQYD 608


>gi|255659372|ref|ZP_05404781.1| DNA primase [Mitsuokella multacida DSM 20544]
 gi|260848458|gb|EEX68465.1| DNA primase [Mitsuokella multacida DSM 20544]
          Length = 592

 Score =  341 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 169/629 (26%), Positives = 286/629 (45%), Gaps = 47/629 (7%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
             F++ +     I  ++  YV   RR        YW CCPFH EKT SF     KGF+YC
Sbjct: 7   EAFVERVSEQTDILRIVQGYVPLKRRGN-----RYWGCCPFHQEKTASFSVLPDKGFFYC 61

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRLIE 122
           F CH  G+   FLS +   S+ ++++  A   G+PLP     P+   +++   DL ++ E
Sbjct: 62  FGCHAGGNAFKFLSLIENISYFDAIKLQAEKLGIPLPERKRSPQEVARDREIQDLRKVNE 121

Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           +A DFFH+ L      +R   Y   RGI    IE F+LGYAP +   L     ++G  +E
Sbjct: 122 LARDFFHNCLTMTRMGERGKAYFAARGIRQETIEEFQLGYAPPAWDKLSTAFLKRGIKQE 181

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            ++ +GL  +       YDRFR R+I PI   RG+V+ FGGR L    + KYLN+PET+L
Sbjct: 182 FLLASGLCAERKQGGGLYDRFRGRVIIPIADERGRVVGFGGRVL-DDSTPKYLNTPETVL 240

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+K K L+    +   +Q+  R           I+VEGYMD +S+  AGV NVV+SLGTA
Sbjct: 241 FNKRKLLFGLDRSHRAIQQEGRA----------IVVEGYMDAISVFDAGVHNVVASLGTA 290

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T    + L   +P I  C+D D+ G +A  +A+ +V      G RV  +++  G+DPD 
Sbjct: 291 FTPEHAKKLLHYAPEICFCYDSDEAGQKATIRALSIVRD---TGARVRVIVVPDGKDPDE 347

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           FIR +G  AF  L+ ++LPLV+   +    + +++T D + +    +   +  I++  +R
Sbjct: 348 FIRKHGADAFRALVEKALPLVEYRLRYVLSHTNYDTLDGKVKALHEMMPVLAGIREAAVR 407

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y + +   L        +E   Y    ++  R   +K              K      
Sbjct: 408 SEYERRLAQTLMLDEGIVRSELRHYRPEAEEAVRQPIRKAV-----------AKADTALR 456

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                ++       A++      +      +   +++ +FL +   E +    +     L
Sbjct: 457 KAGRLVIRMAWQDAAVIAHLETIVPLEGIRDPAQREILTFLKAAAEEGRPVD-DMSAATL 515

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +    EL + L              +    D  + Y  +L + ++   L+    E  ++
Sbjct: 516 SDEAAAELSRSL------------VEDLGGRDETEAYDDSLRVLRKAY-LNALYTEHSRK 562

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             +    G+ E     ++ ++++  ++ +
Sbjct: 563 ANEYAQNGQHEACLQELNEVNKIKHEMDE 591


>gi|319941928|ref|ZP_08016249.1| DNA primase [Sutterella wadsworthensis 3_1_45B]
 gi|319804581|gb|EFW01451.1| DNA primase [Sutterella wadsworthensis 3_1_45B]
          Length = 866

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 171/665 (25%), Positives = 281/665 (42%), Gaps = 69/665 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI  LL    I ++IG+YV   +   N     + ACCPFH EKTPSF  + SK  +
Sbjct: 2   IPEGFISSLLERADIVDVIGRYVTLKKSGRN-----FMACCPFHKEKTPSFSVSPSKQIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIRLI 121
            CF C   G+ + FL  +    F E+V+RLA I G+ +P  +    ++E+ +   L   +
Sbjct: 57  KCFGCGKAGNAIGFLMDIEHLEFPEAVRRLADIYGMQVPEDNSPHRQEERARAKTLGEYM 116

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           + A DF+  +LK     R   YL +R I       F LG++PD  + L+      G    
Sbjct: 117 KEAADFYSETLKAT--PRAIDYLKQREITGETALRFGLGFSPDGWHGLQAIF--PGEKYL 172

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
                 + +  + + + YD FR R++FPIRS +G VI FG RT+   E  KYLNSPET +
Sbjct: 173 AKELLEVGLVLEKNGSRYDAFRGRIMFPIRSPKGLVIGFGARTMKGDEQPKYLNSPETPI 232

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           +HKG  LY  +   + +    R           I+ EGYMDV+ L QAG +  V++LGT+
Sbjct: 233 YHKGSELYGLYEGRSAVIDRARA----------IVCEGYMDVIQLSQAGFREAVAALGTS 282

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           +T   ++ L+KL+  +   FDGD  G +AA +A++  L  +  G    FVLL    DPDS
Sbjct: 283 ITPEHIKKLFKLTDTVYFSFDGDSAGRKAARRALEAALPVIQDGQAARFVLLPPEHDPDS 342

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-QKL 420
            I+  G   +E+ I ++LPL + L     E +S    +ER +L    K  I  +K    L
Sbjct: 343 LIKAEGAEGYEREIEKALPLTEFLKSLLVEGKSLTYAEERVKLTAEAKPLILSMKQAPVL 402

Query: 421 RYYYSQAIRDR--------------------------LQQLFQKYITEHSGYGRYWKKNA 454
           R    + I                             +   F       +       + +
Sbjct: 403 RLALMREIARLARLQLEDLEREWNTGAPERTVLPPMDISTDFGPAGQRWNSGPTAAGRFS 462

Query: 455 RHRDQ--KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
           R       G   +  + S  + ++  K  +RE  +L   + +PA+L +   ++ D    +
Sbjct: 463 RWGGAGSYGRGWQPRRQSYFEPRVRAK-DVRER-MLQCFLAYPALLSDFTPQIEDEFVTS 520

Query: 513 NEL--QKLWSFLFSDFVEQKYF-LPEEIHQRLCERG----FGELLKQLD-----RQVRDA 560
                Q +     +   E         +   L +      +  LL +       ++    
Sbjct: 521 ESASSQYIVEVWRAAAHEDGSVTNTAALLACLEKSPNYDHYARLLAEEMTIETPQEAARL 580

Query: 561 GLWSATTEANIVDVRQGYQQALAL------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            L     E  +  V+    +            + + L+++  +IE  I++   + +  + 
Sbjct: 581 ELKRGFLELELDQVKDRLLKLSEEPATADTLAKMKPLAKRSRDIEALISEAAEEEKDWRR 640

Query: 615 AILIS 619
                
Sbjct: 641 RAEEQ 645


>gi|110637339|ref|YP_677546.1| DNA primase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280020|gb|ABG58206.1| DNA primase [Cytophaga hutchinsonii ATCC 33406]
          Length = 653

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 167/671 (24%), Positives = 294/671 (43%), Gaps = 49/671 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +D I  +   I +  +I  +V   R+        Y  CCPFH+EKTPSF    +KG
Sbjct: 1   MRLTKDTIDQIQQSIDVVEVISDFVSLKRKG-----HYYSGCCPFHNEKTPSFTVTPAKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLI 118
            Y CF C   GD + F+    G S++E++  +A    + +   +   E+  ++  +  ++
Sbjct: 56  IYKCFGCGKGGDAIQFIMEHEGASYVEAMAYMAKKYNIEIKEEELSEEQNFEQSEKDSML 115

Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            +   A+ ++   L N+ D +     Y  ERG     I+ F+LGY+ D      ++  +K
Sbjct: 116 VVTNYASQYYTDQLWNSEDGKSIGLSYFKERGFREETIKKFELGYSHDQWDGFTKNAIEK 175

Query: 177 GFSEEKIIEAGLLIDGDNSA-----TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
           G+  E + + GL I+ DN+        +DRFR R++FPI +  G+V AFG R L   ++ 
Sbjct: 176 GYKTEFLTKTGLSIERDNANENSEKKFFDRFRGRVMFPIHNVAGRVTAFGARILKADKTQ 235

Query: 232 -KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNS E++++HK K LY  F A   ++K              +LVEGY DV+SL Q+G
Sbjct: 236 AKYLNSIESVIYHKSKILYGLFQAKQAIRK----------EEECLLVEGYTDVISLHQSG 285

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V+NVV+S GT+LTE Q++L+ + +P I + +DGD  GL+A+ + +DL    L     V+ 
Sbjct: 286 VENVVASSGTSLTEDQIKLVKRYTPNITILYDGDAAGLKASLRGVDL---ILQQDMNVSI 342

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           V+  +GEDPDS+++  G TAF+  I  +           +     N P +RAE+   +  
Sbjct: 343 VVFPQGEDPDSYVQKIGPTAFKDYIKSNKKDFISFKTEISLKEIGNDPIKRAEVIKDIVE 402

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG--------- 461
            I+ + D   R  + +     L+   Q  I+E++            + ++          
Sbjct: 403 SISKVPDAIKRSVFFRECSKLLEIDEQILISEYNKKAIQKGNQEAKKWEEDRHALAELQA 462

Query: 462 -PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--------ILQEQYQELADIRYDN 512
            P   L    +      +   L E  ++  LIN+ +        +      EL D+ + N
Sbjct: 463 IPDIELPDDIVRLSIEEESLKLHERDMMRYLINYASSPMEQEMPLSDYLIHELQDVEFKN 522

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
                +   +    +     L  +  Q+   +   +    L              + ++ 
Sbjct: 523 PAYDYIIKKIIDTRLNGNTVLHTDFLQQDQPQYVRDAAIDLLSTKFQLSDNWEKFQIDVP 582

Query: 573 DVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                    +    L  +  +L     +  K+I ++   G  E+   L+ +  E+     
Sbjct: 583 KEIDVLNSVVPKTVLRLKRVILKCMMRDNIKEIERIQKDGSNEELMHLLQVAMELKTISK 642

Query: 630 QIESQEAMIEG 640
            I+    ++ G
Sbjct: 643 DIDKTLGIVVG 653


>gi|261207558|ref|ZP_05922243.1| DNA primase [Enterococcus faecium TC 6]
 gi|260077941|gb|EEW65647.1| DNA primase [Enterococcus faecium TC 6]
          Length = 627

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 151/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+ +     I  +IGQYV   +   N     Y   CPFH+E+TPSF   + K  
Sbjct: 18  RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 72

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           ++CF C   G+  +FL  L G SF E+V ++A    +PL          ++  E     L
Sbjct: 73  FHCFGCGKGGNVFTFLQELEGLSFPEAVVKVADFEQIPLEDQWRQRTIAVQNPESATGKL 132

Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I   E A + +HH  L     +    YL  RG+    IE F +G+AP+ R  L++  + +
Sbjct: 133 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 192

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231
             S E +  +GL +   +     DRF  R++FP+R+S+GQ I F GR L+       +  
Sbjct: 193 SISNELLERSGLFV-THDDGRMSDRFYQRVMFPLRNSQGQTIGFSGRWLAPEKGQEKDQP 251

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF+K + L+N   A + ++K          +  I+L EG+MDV++  QAG+
Sbjct: 252 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEILLFEGFMDVIAAWQAGI 301

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           +  ++S+GT+LT  Q++ + KL+  +V C+DGD+ G  A  + I+L+  +      ++ V
Sbjct: 302 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSR--LALSVV 359

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410
           ++    DPD ++R YG+ +F++L+      V     R  +       ++   E    L  
Sbjct: 360 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLDNEKDKIEYLEELLV 419

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +     +  Y   +    Q   +    +     R  ++N +   +   +Q   Q +
Sbjct: 420 ELSRVVSPIEQDMYLSQLSTEFQIGRETIQKQLRDLRRTNQQNRQEPQESQHTQVTRQET 479

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
             K +   +    E  LL       ++     +   + ++ ++   +++    +   +  
Sbjct: 480 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 537

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            F   E    L +     L+ +++             E++  ++     Q L        
Sbjct: 538 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 585

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           L+ +    ++   +    G  +    L   +  +  Q+ Q +
Sbjct: 586 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 627


>gi|302342713|ref|YP_003807242.1| DNA primase [Desulfarculus baarsii DSM 2075]
 gi|301639326|gb|ADK84648.1| DNA primase [Desulfarculus baarsii DSM 2075]
          Length = 586

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 169/626 (26%), Positives = 275/626 (43%), Gaps = 47/626 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P D I  +     I  ++G+ V   +         +   CPFH +K PS   N  +G 
Sbjct: 3   RIPDDVIDQVRQMADIVEVVGRRVMLRQAGR-----TFKGVCPFHGDKDPSLVVNRERGT 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           ++CF C   G+   F+    G SF E+V+ LA   G+ +P    D    +    +  L+R
Sbjct: 58  WHCFGCGEGGNVFGFVMKDQGLSFPEAVRELAQGLGIIIPEPDMDESARRASDEKEKLLR 117

Query: 120 LIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           ++EVA  FF   L          Y  ++RG+D   I+ F LGYA DS   LR HL  +G 
Sbjct: 118 VLEVAGKFFVEQLHGPAGAEARRYLREKRGLDRRTIDEFGLGYALDSWDGLRRHLLGRGV 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           SE+  + AGLL     S  SYDRFR R++FPIR  RG+V++FGGR L +GE  KYLN PE
Sbjct: 178 SEDLALRAGLL-APRESGGSYDRFRGRVVFPIRDDRGRVVSFGGRVLGQGEP-KYLNGPE 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + LF K   LYNF  A  ++ +  R           ++VEGY DV+++   G +  V+ +
Sbjct: 236 SPLFFKSGALYNFDRARQHMHRKGRA----------VVVEGYFDVITMAAFGFEETVAPM 285

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT  Q RLL + +PR++L FDGD+ G +AA +++D+ L     G      LL  GED
Sbjct: 286 GTALTAQQARLLARAAPRVILVFDGDEAGRKAARRSLDVFLGE---GVHPLVHLLPGGED 342

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDSF+R  G    ++ +  + PL +   ++        +P+ ++ +       I  + D 
Sbjct: 343 PDSFLRAQGAGPLDEALERARPLAEATIEQIVRAGDAKSPEGKSAIVAQAGELIKAMGDP 402

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              + Y + +  RL    +                        P     + +  +   + 
Sbjct: 403 VAAWGYLEDLARRLALPPRVVAASL--------------GLPVPGGPPSRPAPARCAPAP 448

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +    E A+L   +      +            +  L K+   + +         P  + 
Sbjct: 449 EGQRDERAILEMALCSAEAARHLVGCGILESLRDPLLAKIGRAVANVLDRTGSPDPAAVI 508

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           Q+L +     ++  L  +        A  +A          Q +A   R R L +++  +
Sbjct: 509 QQLEDPRLQAMVSGLASRGLCLDGVDAGRQA----------QLMAQGLRRRRLRQERALL 558

Query: 599 EKQIAQVTAKGEAEKTAILISILHEV 624
            + IA+    G+A++   L++    +
Sbjct: 559 AQAIAEAERAGDAQRVDHLLAQRQRL 584


>gi|257092100|ref|YP_003165741.1| DNA primase [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257044624|gb|ACV33812.1| DNA primase [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 581

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 173/589 (29%), Positives = 269/589 (45%), Gaps = 49/589 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI++LL  + + +LI  YV   +   N     + ACCPFH EK+PSF  + SK FY
Sbjct: 2   IPDSFIQELLYRVDVVDLIDGYVPLKKTGAN-----FAACCPFHSEKSPSFTVSPSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G  + FL    G  F+++V+ LA  AG+ +P       +  +    L  ++ 
Sbjct: 57  HCFGCGAHGTAIGFLMEYTGVGFVDAVRELAGRAGLQVPDEPRHAAQHGREAQALGDIMT 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  F++  LK +  +R   YL  RG+       F LGYAP+   SL        +   +
Sbjct: 117 RAAKFYYEQLKAS--ERAVSYLKTRGVSGEIARRFGLGYAPEGWQSLAGAF--DDYESAE 172

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +  AGL+I        YDRFR+R++FPI + +G+VIAFGGR L +GE  KYLNSPET LF
Sbjct: 173 LQVAGLVIRN-EQGRLYDRFRDRVMFPIINQKGEVIAFGGRVLGQGEP-KYLNSPETPLF 230

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG+ ++    A   ++           +   I+VEGYMDV++L Q GV N V++LGTA 
Sbjct: 231 EKGREVFGLPQARAVIR----------ETGTAIVVEGYMDVVALAQHGVGNTVATLGTAT 280

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   +  L + + R+V CFDGD  G +AA++A++  L  L     + F  L  GEDPDSF
Sbjct: 281 TPTHVHKLLRQAERLVFCFDGDAAGRKAAWRALENSLETLPEQKSIGFAFLPDGEDPDSF 340

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +R  G  AF +LIVE++PL D L +    +   ++ + RA L    K  I  ++   LR 
Sbjct: 341 VRQGGAEAFRRLIVEAMPLSDFLLRELAGHCDLSSAEGRARLVAVAKPLIGRLQSPLLRL 400

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK---- 478
              + +       F +   E     R   + A  R  +     L     +  +  +    
Sbjct: 401 QVVKRLAQL--SDFSQAEVERLCELRPLVRAAPARVPRQAPSLLRPLLRLLLQKPELASG 458

Query: 479 ------KPSLREAALLLTL-----------INHPAILQEQYQELADIRYDNNELQKLWSF 521
                      E   +  L           + +PA+L    + L     ++         
Sbjct: 459 LPLDLLPEHSAEGRAIRLLCETIAGGGTEALAYPALL----ERLRGSECESVLHTAAAEL 514

Query: 522 LFSDFVEQK-YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
           +   F E +          +L +     +   L  +++  G+   ++E 
Sbjct: 515 MQQPFAEDEIDSEFSGALGQLRDGEQRRVFALLQDKIQKLGVSGLSSEE 563


>gi|313113549|ref|ZP_07799137.1| DNA primase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624064|gb|EFQ07431.1| DNA primase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 591

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 145/609 (23%), Positives = 261/609 (42%), Gaps = 36/609 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P ++I++L     I  L+G YV   R+        Y   CPFH EKTPSF+       +
Sbjct: 2   IPHEYIEELTRRTDIVELVGSYVQLKRKGR-----LYGGLCPFHSEKTPSFYVYPDTQSF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           YCF C   GD ++F   +    + E+V+ LAA AG+P P  D K  +   +++ ++ + +
Sbjct: 57  YCFGCGAGGDAITFTKKINSIDYPEAVKLLAARAGMPEPQEDDKTGR---MRSRILSMNK 113

Query: 123 VATDFFHHSLKNA--RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            A  FFH  L +     ++   Y   RG+D   I  F LGYAP+   +L + LR KG+++
Sbjct: 114 EAARFFHACLNSTVEEARQARAYWRRRGLDDKTIVRFGLGYAPNDGQALYQFLRDKGYNQ 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++  +GL      S   Y  F  R++ PI   RG +IAFGGR L      KY+NSPET+
Sbjct: 174 QELDASGLFKRS-ASGRIYCLFWKRVMTPIFDLRGNIIAFGGRVL-DDSKPKYVNSPETL 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++HK + ++    A     +              +L EGYMDV+S+ QAG+   V + GT
Sbjct: 232 VYHKSETVFALQIAKRSAVR------------RFVLCEGYMDVISMHQAGIDTAVCACGT 279

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q+RL+ + +  ++L +D D+ G +A  ++++L         +V  + +   +DPD
Sbjct: 280 ALTPEQVRLISEYADEVILSYDSDEAGQKATLRSLEL---FRNSPVKVGVLQIPGAKDPD 336

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +I+ YG   F+ L+      +D    R           +R E      N +    +   
Sbjct: 337 EYIKKYGAERFKALLDGVGNALDFRLGRLRSQYDLAQDAQRLEYVKEAVNMLAERSNPTE 396

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ-----RLMQSSLVKGK 475
           +  Y+  + +         +T+     +      R   ++   +     ++       G 
Sbjct: 397 QEVYAGRLAEETNISKTAIMTQLETAVKRAGSKHRWEKKQQALKSGEMNQINVPYSAGGS 456

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            +   +  +  LL  ++  P  +     +L   ++   + ++L+  +     E       
Sbjct: 457 QALGIASAQQRLLAAMLREPHYIDLVQGQLTAEQFVLPQQKELFEAMLRCRQEGIEISLT 516

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   + E    E L  L  Q  D           +  + +G   A    K   + + + 
Sbjct: 517 TLRAFVSEEALNE-LSHLAAQYSDVNCTPDDIRLYLDRIARGMPMA---GKAAHMSNEEL 572

Query: 596 EEIEKQIAQ 604
            +  + + +
Sbjct: 573 SDYLQSMRE 581


>gi|257884905|ref|ZP_05664558.1| DNA primase [Enterococcus faecium 1,231,501]
 gi|257820743|gb|EEV47891.1| DNA primase [Enterococcus faecium 1,231,501]
          Length = 627

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 151/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+ +     I  +IGQYV   +   N     Y   CPFH+E+TPSF   + K  
Sbjct: 18  RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 72

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           ++CF C   G+  +FL  L G SF E+V ++A    +PL          ++  E     L
Sbjct: 73  FHCFGCGKGGNVFTFLQELEGLSFPEAVVKVADFEQIPLEDQWRQRTIAVQNPESATGKL 132

Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I   E A + +HH  L     +    YL  RG+    IE F +G+AP+ R  L++  + +
Sbjct: 133 IAAHEKAAEIYHHMLLHTKAGQPALEYLQNRGLSLELIEEFNIGFAPNERSFLQQVFKNE 192

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231
             S E +  +GL +   +     DRF  R++FP+R+S+GQ I F GR L+       +  
Sbjct: 193 SISNELLERSGLFV-THDDGRMSDRFYQRVMFPLRNSQGQTIGFSGRWLAPEKGQEKDQP 251

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF+K + L+N   A + ++K          +  I+L EG+MDV++  QAG+
Sbjct: 252 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEILLFEGFMDVIAAWQAGI 301

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           +  ++S+GT+LT  Q++ + KL+  +V C+DGD+ G  A  + I+L+  +      ++ V
Sbjct: 302 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSR--LALSVV 359

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410
           ++    DPD ++R YG+ +F++L+      V     R  +       ++   E    L  
Sbjct: 360 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLDNEKDKIEYLEELLV 419

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +     +  Y   +    Q   +    +     R  ++N +   +   +Q   Q +
Sbjct: 420 ELSRVVSPIEQDMYLSQLSTEFQIGRETIQKQLRDLRRTNQQNRQEPQESQHTQVTRQET 479

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
             K +   +    E  LL       ++     +   + ++ ++   +++    +   +  
Sbjct: 480 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 537

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            F   E    L +     L+ +++             E++  ++     Q L        
Sbjct: 538 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 585

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           L+ +    ++   +    G  +    L   +  +  Q+ Q +
Sbjct: 586 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 627


>gi|330813717|ref|YP_004357956.1| DNA primase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486812|gb|AEA81217.1| DNA primase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 585

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 154/626 (24%), Positives = 293/626 (46%), Gaps = 45/626 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP+ +++++   + +S+++G  V   +R       ++    PF +EKTPSF  ND KG
Sbjct: 1   MKYPKSYLEEIRQRLKVSDVVGSTVKLTKRGK-----EFVGLSPFTNEKTPSFTVNDEKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CFS    G    FL+ +   +F ++V+RLA+ AG+          + EK      ++
Sbjct: 56  FYHCFSSGEHGGIFDFLTKIEKLTFGDAVRRLASKAGMSEYKFSKLDVETEKKVKRSEKI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            ++  ++ H ++    +K    YL  R +    IE F+LG+  D   +   H  + G+ E
Sbjct: 116 FQLFFNYCHKNIFTEENKNHLDYLLNRSLKKATIENFQLGFCDDGSRAS-NHFLKLGYHE 174

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++IE GL    +       RF+NR+IFPI++  G+ I  GGRT+      KY+NSPETI
Sbjct: 175 KELIETGLFYLHEQKNILIPRFKNRIIFPIKNLFGEFIGCGGRTVLSSVPAKYINSPETI 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
            F KG NLYNF  A +  +          ++ ++++VEGYMDV+SL    ++NV +SLGT
Sbjct: 235 FFKKGNNLYNFNNAKSENK----------NTDYLLIVEGYMDVVSLYNHDIKNVCASLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+T+ Q+ L W+    I++CFDGD  G  AAY+A + ++      + V+F+++ +G DPD
Sbjct: 285 AITDNQINLAWRNFKNIIICFDGDKSGFAAAYRAAEKLIKISKANHTVSFMIMPQGLDPD 344

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            ++  +GK  F  L+ +   + + +++  T+     +    A+LE  L +  + I+D  +
Sbjct: 345 DYVGKFGKDGFTSLVKKKKDITEFVFEYATKQLQDYSASSLADLEKRLMDIADTIEDVII 404

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           + YY    ++++ +   K                          +L     +      + 
Sbjct: 405 KKYYKGFFKNKIFENLIKKNKNKLNKF-----------------QLSSKFDIDRLEMSEL 447

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            ++E +L   LI  P + ++  + +++I       +K+ + L    +       E+I + 
Sbjct: 448 EVKEFSLCQLLIKFPEMSEKNIERISEIDLSLELTKKIRTALLDISLNGDNCNYEKIKEI 507

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L       +   L     ++ + +  ++                      L  +K + +K
Sbjct: 508 LLGANIQNIDTFLKFVDANSFMTNVDSDT------------FVSLIEDYELQLKKIQKDK 555

Query: 601 QIAQVTAKGEAEKTAILISILHEVHI 626
           +I ++     +  +   ++ L  +  
Sbjct: 556 KIEELEKSFSSNMSEQALNELISLKN 581


>gi|291614900|ref|YP_003525057.1| DNA primase [Sideroxydans lithotrophicus ES-1]
 gi|291585012|gb|ADE12670.1| DNA primase [Sideroxydans lithotrophicus ES-1]
          Length = 578

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 179/623 (28%), Positives = 280/623 (44%), Gaps = 50/623 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI+DLL  + I ++I +Y+   +   N     Y ACCPFH EK+PSF  + SK FY
Sbjct: 2   IPKSFIQDLLNRLDIVDVIERYLPLKKAGAN-----YVACCPFHTEKSPSFTVSQSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G  + F+    G  F+E+V+ LA   GV +P     + +  K+  DL  L++
Sbjct: 57  HCFGCGAHGTAIGFVMEHTGMGFVEAVEDLAKSIGVSVPQEASNVPQH-KVAPDLYDLMQ 115

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            AT ++   LK     R   YL  RG+       F +GYAPD   +L+  +    + +  
Sbjct: 116 SATRYYREQLKQT--PRAIDYLKRRGLSGEVAARFGIGYAPDDWQNLKAVV--PNYQDAS 171

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++E GL+I+G      YDRFR+R++FPI + RGQVI FGGR L KGE  KYLNSPET LF
Sbjct: 172 LVETGLVIEG-EGGKRYDRFRDRIMFPIVNVRGQVIGFGGRVLDKGEP-KYLNSPETTLF 229

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG  LY  F A   ++   R          +I+VEGYMD ++L Q GV+  V++LGTA 
Sbjct: 230 EKGHELYGLFQAQKAIRAHQR----------VIVVEGYMDAVALAQHGVEYAVATLGTAT 279

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T Y ++ L +L  ++V CFDGD  G +AA++A++  L  L  G R+ F+ L    DPD++
Sbjct: 280 TPYHVQKLLRLCDQVVFCFDGDRAGQKAAWRALENALPQLQDGKRLGFLFLPEEHDPDTY 339

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           IR +G  AFE  +  SLPL   L +  T      T + ++ L  + +  +  I       
Sbjct: 340 IREFGHEAFELELENSLPLSGYLLRELTAQVDLRTQEGKSTLLKNAQPLLTAITAPTTAL 399

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              + +      L      E           A  R     ++R   S L           
Sbjct: 400 LLRKEVA----ALAGVTQAELEALWSIKPVAAPQRAAPPKARRTTPSGL----------- 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
              +LL  L+  P + ++   +      + NE   + +                + Q+  
Sbjct: 445 --RSLLRCLVMKPELARQLPGDWLHGHAEGNEAAAIAALADWLHEGADEVSTAALTQQFQ 502

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
               G +            +     + +I     G  +      +   ++ +   +E   
Sbjct: 503 GTMHGPVFA-----TAQGDIMHLGDDFDIGAEFSGLLR----KMQLDAVNAEIAMLEA-- 551

Query: 603 AQVTAKGEAEKTAILISILHEVH 625
             + +  E E+   L     ++ 
Sbjct: 552 NGLKSPVEQERYKQLSEQRKQLK 574


>gi|295101749|emb|CBK99294.1| DNA primase, catalytic core [Faecalibacterium prausnitzii L2-6]
          Length = 592

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 145/616 (23%), Positives = 264/616 (42%), Gaps = 33/616 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P ++I++L     I  L+G YV   R+        Y   CPFH EKTPSF+       +
Sbjct: 2   IPHEYIEELTRRTDIVELVGGYVQLKRKGR-----LYGGLCPFHSEKTPSFYVYPDTQSF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           YCF C   GD ++F   +    ++E+V+ LA  AG+P P  D K  +   +++ ++ + +
Sbjct: 57  YCFGCGAGGDAVTFTKKINSIDYVEAVKLLAQRAGMPEPTEDDKTGR---LRSRILTMNK 113

Query: 123 VATDFFHHSLKNA--RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            A  FFH  L +     ++   Y   RG+D   I  F LGYAPD   +L +HLR KG+++
Sbjct: 114 DAARFFHACLNSTVEEARQARAYWRRRGLDDKTINRFGLGYAPDDGQALYQHLRDKGYNQ 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++  +GL     +    Y  F  R++ PI   RG +IAFGGR L      KY+NSPET+
Sbjct: 174 QELDASGLFKRSQSG-RIYCLFWRRVMTPIFDLRGNIIAFGGRVL-DDSKPKYVNSPETL 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++HK   ++    A                S   +L EGYMDV+S+ QAG+   V + GT
Sbjct: 232 VYHKSDTVFALQIAKRSA------------SHRYVLCEGYMDVISMHQAGIDTAVCACGT 279

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q++L+ + +  ++L +D D+ G +A  ++++L         RV  + +   +DPD
Sbjct: 280 ALTPDQIKLISQYADEVILSYDSDEAGQKATLRSLEL---FRNSPVRVGVLQIPGAKDPD 336

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +I+ YG   F+ L+      +D    R           +R E        +    +   
Sbjct: 337 EYIKKYGADRFKALLDGVGNALDFRLGRLRSQYDLKQDAQRLEYVKEAVEMLAERSNPTE 396

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ----RLMQSSLVKGKL 476
           +  Y+  + +         + + +   +      R    +   Q      ++     G+ 
Sbjct: 397 QEVYAGRLAEETNISKTAIMAQLADAVKKAGSKRRREQDRARLQEGEMNQIKVPYSAGRG 456

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           +   +  E  LL  ++  P  + +   +L   ++   + ++L+  +     +        
Sbjct: 457 ALGMASAEQRLLAAMLREPGYIDKVSAQLRPEQFLQPQQKELYEAMLRCREQGVEVSLAT 516

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-QQALALYKRFRLLSRQK 595
           +   + E    E L +L  Q  D        +  +  + +G    + A       + +  
Sbjct: 517 LRAFVSEEALNE-LSRLAAQYSDVNCTPEDIKLYLERIARGTPVASRAASMSTNDIEQYL 575

Query: 596 EEIEKQIAQVTAKGEA 611
           + + +Q        ++
Sbjct: 576 QSMREQKQGTADAEDS 591


>gi|260578218|ref|ZP_05846137.1| DNA primase [Corynebacterium jeikeium ATCC 43734]
 gi|258603674|gb|EEW16932.1| DNA primase [Corynebacterium jeikeium ATCC 43734]
          Length = 662

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 133/673 (19%), Positives = 240/673 (35%), Gaps = 66/673 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +    PI  ++G+YV                  PF DEKTPSFH   + G+
Sbjct: 5   RIPERDIEAIREQTPIEEVVGEYVQLKPGG----VDSMKGLSPFKDEKTPSFHVRPNHGY 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CFS    GD   FL  +   SF E+V+  A   G  +     +   +E+   +  L+ 
Sbjct: 61  FHCFSTDQGGDVFKFLMLMEHMSFPEAVEACAERIGYRINYEGGRPGNREEPGTRRRLVA 120

Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             + A +F+        +       +L ERG      E F  GYAP     L +HL+QKG
Sbjct: 121 ANKAAFEFYRKEFLGDAEGADVARNFLIERGFTMEHAEQFGCGYAPAGWDRLTKHLQQKG 180

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNS 236
           F+ ++I  AGL           DRF  RL++PIRS  G VI FG R L   +   KYLN+
Sbjct: 181 FTFKEIEAAGLGR--MGKRGPIDRFHRRLLWPIRSVSGDVIGFGARKLFDDDKLGKYLNT 238

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET+L+ K K L+    A   +           +    ++VEGY DV+++  AGV   V+
Sbjct: 239 PETMLYKKSKVLFGIDQAKRNI----------VAKHQAVVVEGYTDVMAMHAAGVDTAVA 288

Query: 297 SLGTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
           + GTA     L  L +           I+  FDGD+ G +AA +A +             
Sbjct: 289 ACGTAFGAEHLSALRRFMLDDQFFRGEIIYTFDGDEAGQKAAMRAFEGDQQFSGR---SY 345

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
             +   G+DP       G  A  +L+   +P+ + + +    +    + D R      + 
Sbjct: 346 VTVAPGGQDPCDVRIKRGDAAVRELVASRIPMFEFVIRTLIADYDTASIDGRVHALRRIV 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ- 468
             +  IKD  LR  Y++     +       + +            R + +          
Sbjct: 406 PVLAGIKDDALRDEYARQAAGWVGWDNPNDVLDQVRKEARKSGGQRPKLELKTGVGPAGA 465

Query: 469 ----------------------------SSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                                         + +   +         ++   +  P +   
Sbjct: 466 GGAGAGAGSAGAGSAGTGSGGGPNLHVVKGMERPNPNDDYLEGPREVMKLALQEPQLAST 525

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
            +  +    + +     +   + S              +R+  +    +   +  ++   
Sbjct: 526 IFDLMPPESFVHPTYVAMAEAVASLGGAANSNGGAGWIERIAAQMKDPMGAAVVSELAVE 585

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            L               Y  A+    + R +  +  +++ ++ ++    + E+   L + 
Sbjct: 586 DLHCLPERLP------YYADAIMARMQERWVGSEIADMKSRMQRMRPDLQKEEYNALFAD 639

Query: 621 LHEVHIQIHQIES 633
           +  +      +  
Sbjct: 640 VIALEKYRRSLHE 652


>gi|91216015|ref|ZP_01252984.1| putative DNA primase [Psychroflexus torquis ATCC 700755]
 gi|91185992|gb|EAS72366.1| putative DNA primase [Psychroflexus torquis ATCC 700755]
          Length = 653

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 151/656 (23%), Positives = 282/656 (42%), Gaps = 59/656 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +     +  +IG YV   +  +N     +    PF +E++PSF  +  K  +
Sbjct: 2   ISKSTIDKVFDISRVEEVIGDYVQLKKSGSN-----FKGLSPFTEERSPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA    + +   +   E+KEK   +  +  +
Sbjct: 57  KDFSSGKGGNVVAFLMEHEHYTYPEAIKHLAKRYNIEVEETEQSSEEKEKASERESMYLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  FF   + +  + +     Y  +RG  S  +E F LGY+PD   +  +   +KG+
Sbjct: 117 NEFAKSFFIKQMLHTDEGKSVGLSYFKKRGFTSETMEKFDLGYSPDEWQAFTDSALEKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
             E + + GL I        +DRF+ R++FPI S  G+++ FGGR L+  +   KYLNSP
Sbjct: 177 RLEFLEKTGLSIV--KGEKRFDRFKGRVMFPIHSMSGRILGFGGRILTTDKKQAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  + A   + K          +    LVEGY DV+   Q G++NVV+S
Sbjct: 235 ESDVYHKSKVLYGLYQAKQSIAK----------ADNCYLVEGYTDVIQFNQTGIENVVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ +L+  I + FDGD  GLRA+ + IDL    L  G  V   L   GE
Sbjct: 285 SGTALTPEQIRLINRLTNNITVLFDGDAAGLRASVRGIDL---ILEQGMNVKVCLFPDGE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF +   K   E  +  +               + N P ++AE+   + N I+ I D
Sbjct: 342 DPDSFAKSNSKEELETYLNSNAQDFIRFKASLLLEDAENDPVKKAEVVRDIVNSISKIPD 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM-QSSLVKGKL 476
           Q  +  Y Q+  + L+       +  +      +K ++ R ++G  + +  + +      
Sbjct: 402 QITQEIYIQSCSNLLEVSEDVLFSTLAQILAKDRKESQRRPRQGSLEIVKEKKTEPVVSK 461

Query: 477 SKKPSLREAALLLTLINHPA----------------------------ILQEQYQEL--A 506
             +  + E  ++  L+ +                              + ++ + EL   
Sbjct: 462 VNQQYVLERNIIQLLLKYGGDTAVFVDVDFDFDEFDKDKHTEVKREYVVFEKIFIELQED 521

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           ++ + N   ++L++ +   + +++    +     L      E+   +    ++       
Sbjct: 522 EVEFSNPLFKELYALIIEIYTKERALKIDTFINHLKPDLSQEVTSIIMENEKNQLHDWKR 581

Query: 567 TEANIVDVRQ---GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
            E  ++D  +          L  R  L+ ++ +++ + I +   + + E     + 
Sbjct: 582 QEIFVIDKSEVDPREVMETILNLRRFLIRKKVQDLSEIIREQKEEVDRELMIETME 637


>gi|222151461|ref|YP_002560617.1| hypothetical protein MCCL_1214 [Macrococcus caseolyticus JCSC5402]
 gi|222120586|dbj|BAH17921.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 583

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 149/631 (23%), Positives = 265/631 (41%), Gaps = 49/631 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+   + I ++     I +++ QYV  ++R  N     Y   CPFHDEKTPSF  +  K 
Sbjct: 1   MHIEPELIHEIQQKNDILDVVSQYVKLEKRGRN-----YIGLCPFHDEKTPSFSVSVEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
             +CF C   G+   F+  +   SFIE+V+ L   AG+ +   D    + +  Q  +I +
Sbjct: 56  ICHCFGCKKGGNVFQFIEQIEAISFIEAVKILGERAGIEV-KTDDDTPQADNEQNKMIAM 114

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E    ++++ LK   + +    YL  RG     I   K+GY+P+     R++L+ KG+ 
Sbjct: 115 HEAMAHYYNYVLKAIEQAEPALKYLYSRGFTDEQIAREKIGYSPNVSTFTRDYLKNKGYD 174

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           E    +AGLL   + + + +DRFRNR++FPI+  RG+VI F  R++   E  KYLNSPET
Sbjct: 175 EALAYDAGLLSRNEETISYFDRFRNRIMFPIKDFRGKVIGFSARSIDGSEP-KYLNSPET 233

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           ++F K   LY+   A   ++          +   +IL+EG+MDVL L +AG+ N ++++G
Sbjct: 234 LIFQKRNVLYHIDVARKPIR----------NQDEVILLEGFMDVLKLNEAGILNAIATMG 283

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TAL+   +  L KL+  I L +DGD  G+ A    + +       G  V  V + +G DP
Sbjct: 284 TALSREHILQLKKLASNITLMYDGDRAGIEAT---LKIGKQLNQEGMNVFVVPMKKGYDP 340

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D  I   G   F      +       + R   +   N      +   ++      +  + 
Sbjct: 341 DEMITELGTDKFLSYFNHNKLTYVSFYMRHYLDEIKNNDLAYEKHLNNIIEDAKLMNSEH 400

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           L+      I +     F     +     R   +                    + ++  +
Sbjct: 401 LQKKVLHEITELFNVDFDSLKFKVQKDNRIQARM----------------PTFESEVLSR 444

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           P L E  +L   +N   +  +   ++ +  +     Q ++  L   +  ++ F+  +   
Sbjct: 445 PMLAERTVLKYFMNDRMLFMQFKDQITEEHFSVKVHQMIYKALSGYYKIEETFMLSKFSS 504

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            +        LK     V                  +     L ++++      Q + ++
Sbjct: 505 HVPHECHETCLKIDAMLVNH------------EPSIEEVNDYLYVFQQEPKEIEQLQSLK 552

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            Q++   +    EK A L+  +  +  Q  Q
Sbjct: 553 AQLSDAVSTENHEKRAQLMREIINLQRQKKQ 583


>gi|297539658|ref|YP_003675427.1| DNA primase [Methylotenera sp. 301]
 gi|297259005|gb|ADI30850.1| DNA primase [Methylotenera sp. 301]
          Length = 578

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 170/596 (28%), Positives = 277/596 (46%), Gaps = 43/596 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI++LL  + I ++I +     +   N     Y ACCPFH+EK+PSF  + +K FY
Sbjct: 2   IPESFIQELLNRVDIVDVIDKSTPLKKAGAN-----YSACCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIRLI 121
           +CF C   G  + FL    G SF+E++  LA + G+ +P       K E      L   +
Sbjct: 57  HCFGCGAHGTAVGFLMEYQGLSFVEAINDLARMVGMIVPQEARDANKPEHKVVLGLQESL 116

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           + A  ++   LK +   R   YL  RG+       F++GYAP    +L+       +  E
Sbjct: 117 QQAAQYYKAELKKS--PRAIEYLKARGLSGQVAAKFQVGYAPAGWQNLQSVF--PNYDNE 172

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +  AGL+++ D     YDRFR+R++FPI   +GQVI FGGR ++  ++ KY NSPET L
Sbjct: 173 ALSVAGLVVENDQGRR-YDRFRDRIMFPIHDQKGQVIGFGGRVINPEDTPKYYNSPETPL 231

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KG  LY  F A   ++ + R           ++VEGYMDV++L Q G++  V++LGTA
Sbjct: 232 FQKGHELYGLFLARRAIRDAGRA----------LVVEGYMDVVALAQYGIEYAVAALGTA 281

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T + +  L + +  +V CFDGD+ GL AA++A    L  L  G +++F+ L +  DPDS
Sbjct: 282 TTPFHITKLMRQTDEVVFCFDGDNAGLTAAWRAAMNALPALTDGLKLSFLFLPKAHDPDS 341

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           ++R +GK  FE  I  ++PL   + K  +E+    + +++       +  +  I   +  
Sbjct: 342 YVREFGKEQFEAEIKTAMPLSQYILKHLSEDNPLQSQEDKVRFLNEAEPIMQQINAPRSA 401

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
            Y  + + +    L Q  I E     +    N      +    R   S            
Sbjct: 402 MYLRKKVAE----LAQLSIDEMQSLLKLPNLNKAPAQARPKLTRTTNS------------ 445

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                  LT+I  PA++ +   +L  I   +++   L   +    +   +  P  I + L
Sbjct: 446 -LHHHFCLTMIMQPALVDK--DDLLWIAGSSDDELLLRQTI-ETCLMHPHSKPVVIMREL 501

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             +    ++ +L +++          +A     RQ  +Q L L K    L  Q  E
Sbjct: 502 ESKVDANIITELKKELNVLDETLDLAQAMSG-ARQQLKQ-LYLQKNETALLAQVSE 555


>gi|257877974|ref|ZP_05657627.1| DNA primase [Enterococcus faecium 1,230,933]
 gi|257881239|ref|ZP_05660892.1| DNA primase [Enterococcus faecium 1,231,502]
 gi|257889827|ref|ZP_05669480.1| DNA primase [Enterococcus faecium 1,231,410]
 gi|257892236|ref|ZP_05671889.1| DNA primase [Enterococcus faecium 1,231,408]
 gi|260559025|ref|ZP_05831211.1| DNA primase [Enterococcus faecium C68]
 gi|257812202|gb|EEV40960.1| DNA primase [Enterococcus faecium 1,230,933]
 gi|257816897|gb|EEV44225.1| DNA primase [Enterococcus faecium 1,231,502]
 gi|257826187|gb|EEV52813.1| DNA primase [Enterococcus faecium 1,231,410]
 gi|257828615|gb|EEV55222.1| DNA primase [Enterococcus faecium 1,231,408]
 gi|260074782|gb|EEW63098.1| DNA primase [Enterococcus faecium C68]
          Length = 627

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 151/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+ +     I  +IGQYV   +   N     Y   CPFH+E+TPSF   + K  
Sbjct: 18  RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 72

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           ++CF C   G+  +FL  L G SF E+V ++A    +PL          ++  E     L
Sbjct: 73  FHCFGCGKGGNVFTFLQELEGLSFPEAVVKVADFEQIPLEDQWRQRTIAVQNPESATGKL 132

Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I   E A + +HH  L     +    YL  RG+    IE F +G+AP+ R  L++  + +
Sbjct: 133 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 192

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231
             S E +  +GL +   +     DRF  R++FP+R+S+GQ I F GR L+       +  
Sbjct: 193 SISNELLERSGLFV-THDDGRMSDRFYQRVMFPLRNSQGQTIGFSGRWLAPEKGQEKDQP 251

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF+K + L+N   A + ++K          +  I+L EG+MDV++  QAG+
Sbjct: 252 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEILLFEGFMDVIAAWQAGI 301

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           +  ++S+GT+LT  Q++ + KL+  +V C+DGD+ G  A  + I+L+  +      ++ V
Sbjct: 302 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSR--LALSVV 359

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410
           ++    DPD ++R YG+ +F++L+      V     R  +       ++   E    L  
Sbjct: 360 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLDNEKDKIEYLEELLV 419

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +     +  Y   +    Q   +    +     R  ++N +   +   +Q   Q +
Sbjct: 420 ELSRVVSPIEQDMYLSQLSTEFQIGRETIQKQLRDLRRTNQQNRQEPQESQHTQVTRQET 479

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
             K +   +    E  LL       ++     +   + ++ ++   +++    +   +  
Sbjct: 480 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 537

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            F   E    L +     L+ +++             E++  ++     Q L        
Sbjct: 538 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 585

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           L+ +    ++   +    G  +    L   +  +  Q+ Q +
Sbjct: 586 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 627


>gi|302345809|ref|YP_003814162.1| DNA primase [Prevotella melaninogenica ATCC 25845]
 gi|302149268|gb|ADK95530.1| DNA primase [Prevotella melaninogenica ATCC 25845]
          Length = 651

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 158/667 (23%), Positives = 281/667 (42%), Gaps = 55/667 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  +  ++    I  ++  +V   +  T      Y   CPFHD++TPSF  +  KG Y
Sbjct: 9   IDRPTVDRIMNASNIVEVVSDFVSLRKTGT-----SYKGLCPFHDDRTPSFSVSPVKGVY 63

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CFSC   G+ + F+      ++ E+++ LA    + +       + +++E  +  +  +
Sbjct: 64  KCFSCGAAGNAVKFIMEHEQMTYPEALKWLANKYHIEVHERELTNEEKQQENERESMFLV 123

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +F+  L N  D       Y   RG     I  F+LG+   SR++  +   + GF
Sbjct: 124 NEWAAKYFNDILHNDVDGMAIGMQYFRSRGFRDDIIRKFQLGFCLSSRHAFADVALKAGF 183

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
             + +I+ GL      +    DRF  R++FP     G+V AFGGR L    KG S KY+N
Sbjct: 184 QRDFLIKTGLC-FERENGELIDRFNGRVMFPWVGVSGKVTAFGGRLLDSRTKGVSQKYVN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP+++++HK + LY  F A   + K             + +VEGY DV+S+ Q G++NVV
Sbjct: 243 SPDSVIYHKERELYGIFQAKKAIAK----------HDLVYMVEGYTDVVSMHQCGIENVV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ +Q+RLL + +P IVL +DGD+ G  AA +  D++L        V  +LL  
Sbjct: 293 ANSGTALSVHQIRLLHRFTPNIVLLYDGDEAGQHAALRGTDMLLAES---MNVKVLLLPD 349

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPD F R Y    F K I ++     +++K     +    P +R+E    +   I+ I
Sbjct: 350 GKDPDEFARSYSAEDFRKYIEDNQTDF-IVFKINVLLKGVTDPIKRSEAVGSIVQSISVI 408

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSG--YGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           KD  LR  Y +   +R     +  + + +   Y    ++    +  +       +   + 
Sbjct: 409 KDPILRDTYIRECANRTGVSERTLMDQMNRNIYSNREQQTREQQQHRAAVMEEQREDAMA 468

Query: 474 GKLSKKPSLREAALLLTLINHPA--ILQEQYQEL-------------------ADIRYDN 512
                  S  E  L+  ++      I ++   E                     ++ + N
Sbjct: 469 VASKPTTSKVEQMLIQAVVKDGEKVIFRDVKDENSGQTYNLTVAQYIAYDLGSDNLGFSN 528

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK-QLDRQVRDAGLWSATTEANI 571
               K+         E+ +   E   Q          ++  +DR      L    TE   
Sbjct: 529 ELYTKILQEAVEHCGEEGFKAEEYFTQHADINIASVAVRLSVDRFQLAGSLQVKETEQT- 587

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             +R      +A + R   +S   +E+ +++ QV    E ++    I     +  ++ + 
Sbjct: 588 --LRDRVIHLVADF-RLEYVSFHLKELNERLLQVKDSQEMQEIMSEIMRTQNLRNELAKK 644

Query: 632 ESQEAMI 638
                ++
Sbjct: 645 TGSNILV 651


>gi|238897854|ref|YP_002923533.1| DNA biosynthesis; DNA primase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465611|gb|ACQ67385.1| DNA biosynthesis; DNA primase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 585

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 176/604 (29%), Positives = 281/604 (46%), Gaps = 50/604 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I+ LI   +   ++  N     ++ACCPFH EKTPSF  ND K F
Sbjct: 4   RIPRKFINDLLTRTDIAALIDARLPLKKKGKN-----FYACCPFHHEKTPSFSVNDEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-----EKKEKIQTD 116
           Y+CF C   G+ + FL       F+ES++ LA+I G+ +P           +++   + +
Sbjct: 59  YHCFGCGAHGNVIDFLMKFERLEFVESIEELASIHGLEVPSEKTDALKEQVQQRRHQRYN 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L + +E    F+  SLK+    +  +YL +RG++   IE+F +G+A     +L +H   +
Sbjct: 119 LYQWMEKLNAFYQKSLKDPAAYKARHYLAQRGLNDSTIELFSIGFALPGWSNLLDHFGHE 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
             SE K     +  D   +   YDRFR R+ FPIR  RG VIAFGGR +++ E  KYLNS
Sbjct: 179 NTSELKDAGMLVTSD---NGRIYDRFRERITFPIRDKRGNVIAFGGRVINQ-EMPKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +FHKG+ LY  + A           + ++    +++VEGYMDVL+L Q G++  V+
Sbjct: 235 PETDIFHKGRQLYGLYEAK----------LSQSDLKLLLVVEGYMDVLTLAQFGIRYAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGTA TE  ++L+++ + +IV C+DGD  G +AA++ ++  L +L  G ++ F+ L  G
Sbjct: 285 SLGTATTEEHIQLMFRTTDQIVCCYDGDKAGRKAAWRVLETALPYLNDGRQLRFIFLPEG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD+ +R  GK AFE+ I ++      L+         N P+ RA+L       IN + 
Sbjct: 345 EDPDTLLRSEGKVAFEQRIEQAQSFSAFLFDTVMLGIELNRPEGRAKLSSLALPLINQVP 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + LR Y  Q +  +L  L    +              +    K PS + ++ + +    
Sbjct: 405 GETLRLYLRQELGKKLGILEDHLLDRLL---------PKKGVSKMPSSKQLKPTTM---- 451

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                     L+  LI +P +  +    L DI+        L+  L    +         
Sbjct: 452 --------RVLIALLIQNPRLA-KMVPSLEDIQQARIAGLPLFIELLEHCLACPGLNTAH 502

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + +        E  KQL++      +     +   +              + R L     
Sbjct: 503 LLELYRG---KECQKQLEQLSAWGDMEFKEEKMIQIIFTDALNHLFDSILQQR-LEILIA 558

Query: 597 EIEK 600
               
Sbjct: 559 RARA 562


>gi|68535702|ref|YP_250407.1| DNA primase [Corynebacterium jeikeium K411]
 gi|68263301|emb|CAI36789.1| DNA primase [Corynebacterium jeikeium K411]
          Length = 661

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 133/670 (19%), Positives = 240/670 (35%), Gaps = 63/670 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +    PI  ++G+YV                  PF DEKTPSFH   + G+
Sbjct: 7   RIPERDIEAIREQTPIEEVVGEYVQLKPGG----VDSMKGLSPFKDEKTPSFHVRPNHGY 62

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CFS    GD   FL  +   SF E+V+  A   G  +     +   +E+   +  L+ 
Sbjct: 63  FHCFSTDQGGDVFKFLMLMEHMSFPEAVEACAERIGYRISYEGGRPGNREEPGTRRRLVA 122

Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             + A +F+        +       +L ERG      E F  GYAP     L +HL+QKG
Sbjct: 123 ANKAAFEFYRKEFLGDAEGADVARNFLIERGFTMEHAEQFGCGYAPAGWDRLTKHLQQKG 182

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNS 236
           F+ ++I  AGL           DRF  RL++PIRS  G VI FG R L   +   KYLN+
Sbjct: 183 FTFKEIEAAGLGR--MGKRGPIDRFHRRLLWPIRSVSGDVIGFGARKLFDDDRLGKYLNT 240

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET+L+ K K L+    A   +           +    ++VEGY DV+++  AGV   V+
Sbjct: 241 PETMLYKKSKVLFGIDQAKRNV----------VAKHQAVVVEGYTDVMAMHAAGVDTAVA 290

Query: 297 SLGTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
           + GTA     L  L +           I+  FDGD+ G +AA +A +             
Sbjct: 291 ACGTAFGAEHLAALRRFMLDDQFFRGEIIYTFDGDEAGQKAAMRAFEGDQQFSGR---SY 347

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
             +   G+DP       G  A  +L+   +P+ + + +    +    + D R      + 
Sbjct: 348 VTVAPGGQDPCDVRIKRGDAAVRELVASRIPMFEFVIRTLIADYDTASIDGRVHALRRIV 407

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ- 468
             +  IKD  LR  Y++     +       + +            R + +          
Sbjct: 408 PVLAGIKDDALRDEYARQAAGWVGWDNPNDVLDQVRKEARKSGGQRPKLELKTGAGAAGG 467

Query: 469 -------------------------SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
                                      + +   +         ++   +  P +    + 
Sbjct: 468 AGGSRAGAAGAAGTGSAGGPNLHVVKGMERPNPNDDYLEGPREVMKLALQEPQLASTIFD 527

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
            +    + +     +   + S              +R+  +    +   +  ++    L 
Sbjct: 528 LMPPESFVHPTYVAMAEAVASLGGAANSNGGAGWIERIAAQMKDPMGAAVVSELAVEDLH 587

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
                         Y  A+    + R +  +  +++ ++ ++    + E+   L + +  
Sbjct: 588 CLPERLP------YYADAIMARMQERWVGSEIADMKSRMQRMRPDLQKEEYNALFADVIA 641

Query: 624 VHIQIHQIES 633
           +      +  
Sbjct: 642 LEKYRRSLHE 651


>gi|260063732|ref|YP_003196812.1| putative DNA primase [Robiginitalea biformata HTCC2501]
 gi|88783177|gb|EAR14350.1| putative DNA primase [Robiginitalea biformata HTCC2501]
          Length = 658

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 168/663 (25%), Positives = 273/663 (41%), Gaps = 63/663 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  I  +     +  +IG +V   +  +N     +    PF DE+TPSF  +  K  +
Sbjct: 2   IARTTIDKVFDAARVEEVIGDFVQLKKSGSN-----FKGLSPFTDERTPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA    + +       E+KE+   +  ++ +
Sbjct: 57  KDFSSGKGGNVVAFLMEHEHFTYPEAIKYLARKYQIEVEETQRTDEEKEQASERESMLLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A DFF   L  +   +     Y  ERG     I  F LGY PD   +  +   +KG+
Sbjct: 117 SEFARDFFQECLWESESGKAIGLTYFKERGFSEDTIREFGLGYNPDQWSAFTDAALEKGY 176

Query: 179 SEEKIIEAGLLI-----DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-K 232
             E + + GL I     D       +DRF+ R++FPI+S  G+V+ FGGRTLS  + V K
Sbjct: 177 QLEFLEKTGLTIVKPAADPAQPPRKFDRFKGRVLFPIQSMSGRVLGFGGRTLSSEKKVAK 236

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPE+ ++HK K LY  + A   + +               LVEGY DV+ L Q+G++
Sbjct: 237 YLNSPESEIYHKSKVLYGIYHAKKAIAR----------EDVCYLVEGYTDVIQLYQSGIE 286

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           NVV+S GTALT  Q+RL+ +L+  +V+ FDGD  GLRA+ + IDL    L  G  V    
Sbjct: 287 NVVASSGTALTPEQIRLIRRLTVNVVVLFDGDAAGLRASLRGIDL---ILEEGLNVRVCT 343

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              GEDPDSF R + + A E  + E+               + N P  RAE    + + I
Sbjct: 344 FPAGEDPDSFARSHSRDAIEAYLKENSRDFIQFKTALLTEEAANDPIRRAETIRDIVSSI 403

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             I D+  R  Y Q     +    +      +   R  ++    + + GP + + Q    
Sbjct: 404 ARIPDRIKREVYVQECASLMGISEEVLFNTLAQMTRKAQREEARKPEPGPMEVVRQDP-A 462

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL--------------------------- 505
             K+  +  L E  ++  L+ +    +E    +                           
Sbjct: 463 AAKVDPQYEL-ERKIIEVLLLYGRESEEFEDLVLKENDEGELVLEPERSEVRVFEKIFLD 521

Query: 506 ---ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
               +I   +   + L+  L      +  F    + +       GEL   L  + +    
Sbjct: 522 LQEDEIELSDARFRSLYYKLIEKLNSEPDFSVHRLTEEADAEFAGELSAILMDEEKYELH 581

Query: 563 WSATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
                +      +    Q +    L  R  L+ ++ E +  Q      +  AE    +I+
Sbjct: 582 HWERKDIYPKQKQDSLGQLVSETILSLRCYLIKKRIEALRGQTESRPGETNAEVLEEIIN 641

Query: 620 ILH 622
            L 
Sbjct: 642 YLQ 644


>gi|320355020|ref|YP_004196359.1| DNA primase [Desulfobulbus propionicus DSM 2032]
 gi|320123522|gb|ADW19068.1| DNA primase [Desulfobulbus propionicus DSM 2032]
          Length = 596

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 165/625 (26%), Positives = 259/625 (41%), Gaps = 52/625 (8%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +     I  +IG++V+  R  +      +   CPFH+EKTPSF  N    F++CF C   
Sbjct: 14  VRDAADIVQVIGEHVELKRSGS-----RFTGRCPFHNEKTPSFSVNPQGQFFHCFGCGEH 68

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--DLIRLIEVATDFF 128
           GD  SF+       F E+++ LA   GV LP       ++ +++    L    E A   +
Sbjct: 69  GDVFSFVMKYHHMEFPEALKLLARKFGVDLPERPLSESEQARLRQLEKLYEANETAVLVY 128

Query: 129 HHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPD----SRYSLREHLRQKGFSEEKI 183
              L++    K    YL+ RG+ + AIE ++LG APD        L + L  KG + E +
Sbjct: 129 QQCLRHPKWGKPARAYLERRGVPTAAIERYRLGCAPDPEQAGWSYLTDQLMAKGLTPETL 188

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
            +AGL +        YDRFR+R++FPI    G+V+AFGGR L      KY+NSPE+ +F 
Sbjct: 189 AQAGLAVRK-EQGGQYDRFRSRIMFPIVDMTGRVVAFGGRIL-GDGQPKYMNSPESPIFD 246

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K + L+        ++K+ R           ++VEG  D+L L   G+ NVV+ LGTALT
Sbjct: 247 KSRLLFGLHQHREAIRKARR----------CLVVEGNFDLLLLSVHGIDNVVAPLGTALT 296

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
              +  L   S  ++L FD D  GL+AA ++I      L  G      LL  G DPDSF+
Sbjct: 297 RSHIHSLRGYSDEVILLFDADAAGLKAAMRSI---PFFLAEGVEGRVALLPPGHDPDSFV 353

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R  G  A  +L+  + PL +  +          T   +  +   LK  +    D   R  
Sbjct: 354 REAGAEAVVELVDAARPLPEFAFDALVR-EHGLTLAGKNRIVSELKRLLAEAADAGQREL 412

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                 ++L            GY +   K A    +  P+    QS           S +
Sbjct: 413 MIAHFSEKLGL--------APGYFQVPSKAAVPLAKPAPAPITPQS--------ASLSRQ 456

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  ++  LI +P   +E         + ++    +   L           PE++   +  
Sbjct: 457 EKQVVDFLILYPEYHEELRAAGLTALFRDSTAAWVIE-LVEHISAAGPSQPEQLLTTIDN 515

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 + QL  QV       +  E      R+   + L    + +   R    +++QI 
Sbjct: 516 ETIRAYIIQLLTQV------PSGIEPESDHARRTCDELLQWLHQEQQ-RRDGAALQEQIN 568

Query: 604 QVTAKGEAEKTAILISILHEVHIQI 628
                G AE    L+    E+  + 
Sbjct: 569 LAQQHGNAELLMELLRRKQEIGKKR 593


>gi|69249284|ref|ZP_00604923.1| DNA primase [Enterococcus faecium DO]
 gi|258616540|ref|ZP_05714310.1| DNA primase [Enterococcus faecium DO]
 gi|289565070|ref|ZP_06445523.1| DNA primase [Enterococcus faecium D344SRF]
 gi|293563373|ref|ZP_06677822.1| DNA primase [Enterococcus faecium E1162]
 gi|293568033|ref|ZP_06679371.1| DNA primase [Enterococcus faecium E1071]
 gi|294614872|ref|ZP_06694767.1| DNA primase [Enterococcus faecium E1636]
 gi|294618227|ref|ZP_06697810.1| DNA primase [Enterococcus faecium E1679]
 gi|294622678|ref|ZP_06701640.1| DNA primase [Enterococcus faecium U0317]
 gi|314939476|ref|ZP_07846710.1| DNA primase [Enterococcus faecium TX0133a04]
 gi|314941107|ref|ZP_07848005.1| DNA primase [Enterococcus faecium TX0133C]
 gi|314949893|ref|ZP_07853195.1| DNA primase [Enterococcus faecium TX0082]
 gi|314951692|ref|ZP_07854735.1| DNA primase [Enterococcus faecium TX0133A]
 gi|314993961|ref|ZP_07859288.1| DNA primase [Enterococcus faecium TX0133B]
 gi|314996912|ref|ZP_07861913.1| DNA primase [Enterococcus faecium TX0133a01]
 gi|68194218|gb|EAN08743.1| DNA primase [Enterococcus faecium DO]
 gi|289163077|gb|EFD10924.1| DNA primase [Enterococcus faecium D344SRF]
 gi|291589254|gb|EFF21064.1| DNA primase [Enterococcus faecium E1071]
 gi|291592334|gb|EFF23948.1| DNA primase [Enterococcus faecium E1636]
 gi|291595507|gb|EFF26817.1| DNA primase [Enterococcus faecium E1679]
 gi|291597876|gb|EFF29006.1| DNA primase [Enterococcus faecium U0317]
 gi|291604634|gb|EFF34119.1| DNA primase [Enterococcus faecium E1162]
 gi|313588971|gb|EFR67816.1| DNA primase [Enterococcus faecium TX0133a01]
 gi|313591563|gb|EFR70408.1| DNA primase [Enterococcus faecium TX0133B]
 gi|313596156|gb|EFR75001.1| DNA primase [Enterococcus faecium TX0133A]
 gi|313600108|gb|EFR78951.1| DNA primase [Enterococcus faecium TX0133C]
 gi|313641278|gb|EFS05858.1| DNA primase [Enterococcus faecium TX0133a04]
 gi|313643735|gb|EFS08315.1| DNA primase [Enterococcus faecium TX0082]
          Length = 613

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 151/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+ +     I  +IGQYV   +   N     Y   CPFH+E+TPSF   + K  
Sbjct: 4   RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           ++CF C   G+  +FL  L G SF E+V ++A    +PL          ++  E     L
Sbjct: 59  FHCFGCGKGGNVFTFLQELEGLSFPEAVVKVADFEQIPLEDQWRQRTIAVQNPESATGKL 118

Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I   E A + +HH  L     +    YL  RG+    IE F +G+AP+ R  L++  + +
Sbjct: 119 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231
             S E +  +GL +   +     DRF  R++FP+R+S+GQ I F GR L+       +  
Sbjct: 179 SISNELLERSGLFV-THDDGRMSDRFYQRVMFPLRNSQGQTIGFSGRWLAPEKGQEKDQP 237

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF+K + L+N   A + ++K          +  I+L EG+MDV++  QAG+
Sbjct: 238 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEILLFEGFMDVIAAWQAGI 287

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           +  ++S+GT+LT  Q++ + KL+  +V C+DGD+ G  A  + I+L+  +      ++ V
Sbjct: 288 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSR--LALSVV 345

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410
           ++    DPD ++R YG+ +F++L+      V     R  +       ++   E    L  
Sbjct: 346 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLDNEKDKIEYLEELLV 405

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +     +  Y   +    Q   +    +     R  ++N +   +   +Q   Q +
Sbjct: 406 ELSRVVSPIEQDMYLSQLSTEFQIGRETIQKQLRDLRRTNQQNRQEPQESQHTQVTRQET 465

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
             K +   +    E  LL       ++     +   + ++ ++   +++    +   +  
Sbjct: 466 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 523

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            F   E    L +     L+ +++             E++  ++     Q L        
Sbjct: 524 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 571

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           L+ +    ++   +    G  +    L   +  +  Q+ Q +
Sbjct: 572 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 613


>gi|313158994|gb|EFR58371.1| DNA primase [Alistipes sp. HGB5]
          Length = 657

 Score =  339 bits (869), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 155/675 (22%), Positives = 281/675 (41%), Gaps = 67/675 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ +  +     I ++IG+YV   R+  N     Y ACCPFH+EKTPSF  + SKG Y
Sbjct: 2   IDRETVDRIYAAANIVDIIGEYVTLKRKGVN-----YQACCPFHNEKTPSFVVSPSKGVY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CF C   G+ ++FL      ++ E+++ +A   G+ +       +  ++   +  +  L
Sbjct: 57  KCFGCGKGGNAVTFLMEHENITYPEALKMVAKRYGIEVKEKEMTDEEVRRNDDRESMFAL 116

Query: 121 IEVATDFFHHSLKNARDKR---LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              A D+F   L +  +     + Y+  +RG+    I+ F LG+ P     + +     G
Sbjct: 117 NGWAADYFADYLHHETEGMSVGMTYFRQKRGMADATIKKFGLGFCPAKGDRMSKDALAAG 176

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNS 236
           + +E ++  GL +  ++  + YDRFR+R+IFP+ +  G+++AFGGRTL   ++V KY NS
Sbjct: 177 YKKEFLVATGLSLQRESDGSLYDRFRDRVIFPVHNISGRIVAFGGRTLRTDKTVAKYQNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ ++ K + LY  + A   +              F I+VEGY DV+S+ QAGV+NVV+
Sbjct: 237 PESEIYSKKRELYGLYFAKKAI----------QQLDFAIMVEGYTDVISMHQAGVENVVA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S GT+LT  Q+RLL + +  I + +DGD  G+ A+ + ID+    L  G  V  VLL   
Sbjct: 287 SSGTSLTTEQIRLLNRFTKNITVIYDGDSAGIHASLRGIDM---ILKEGMNVRVVLLPEP 343

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDSF R +     ++ I  +         R     +   P ++A L   +   I  I 
Sbjct: 344 EDPDSFARTHTAAELQEYIRANEQDFLAFKARLLLQDAEGDPIKKAALIGDMVQSIAQIP 403

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK--------NARHRDQKGPSQRLMQ 468
           D   R  Y +     +       I+E +                  +   ++   +    
Sbjct: 404 DPIQRSVYIKECARIMDIDENILISEVARKRMSTTGDRETDEFVRRQTAQRRAEVREPEV 463

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ-----------------ELADIRYD 511
             + + +        E  L+  L+ +     +  +                 +   + + 
Sbjct: 464 EFVKQVQAGSSVEALERELVKYLLKYGHCSFDFKEGRTMVACNVAEVIFMELDSDGLSFS 523

Query: 512 NNELQKLWSFLFS---DFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSAT 566
           N    K+ +                                +  L  D     + LW   
Sbjct: 524 NPLYDKILATYREQWKLLGTGAEVPAHFFLNHPDPEVCNVSVDILTSDDNYVPSELWRRK 583

Query: 567 T---EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL-- 621
               + +   +  G  +A+ LY + +++    +E + ++A  +     E+   +I  L  
Sbjct: 584 EIHIDTDAEMLAVGVPKAVTLY-KSKVIEGYIKEWQAKLADESLT--EEQQNEVIQRLAG 640

Query: 622 -----HEVHIQIHQI 631
                  +  ++ ++
Sbjct: 641 FNKVKVTIARKLQRL 655


>gi|163751573|ref|ZP_02158795.1| DNA primase [Shewanella benthica KT99]
 gi|161328581|gb|EDP99734.1| DNA primase [Shewanella benthica KT99]
          Length = 575

 Score =  339 bits (869), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 177/625 (28%), Positives = 298/625 (47%), Gaps = 56/625 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI +L+  I I +LI   V   +   N       ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINELVARIDIVDLIDVKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   G+ + F+       FI++++ LA   G+ +P      +++++ +  DL +
Sbjct: 56  FYHCFGCGAHGNVIDFVMEYDRLDFIDTIEELAGQLGLEVPREQGTGKRRDEGLSRDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A+  F   L+  +DK+    YLD RG+    IE F +G+AP+    L    RQ   
Sbjct: 116 LMEEASRHFQSQLRQHKDKQKVVDYLDHRGLSEKVIEDFHIGFAPEGWDGLLSRYRQSQD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S++K++ AG++I+ DN    YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 176 SQDKLLTAGMVIENDNGRR-YDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG  LY  +      +   R          +++VEGYMDV++L Q  V   V+SL
Sbjct: 234 TPIFHKGNELYGLYELKQRHRDPQR----------VLIVEGYMDVVALAQFDVDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T  Q +LL + +  ++ C+DGD  G+ AA++A++  L  L PGN+V F+ L +GED
Sbjct: 284 GTATTAEQFQLLLRTAKEVICCYDGDRAGVEAAWRALETALPLLKPGNQVKFMFLPQGED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD+ +R  GK AFE  I ++  L + L++   +    +       L     + I  ++D 
Sbjct: 344 PDTMVRQVGKEAFESQIDDAKALPEFLFETLAQRHGADKGT----LAKQAISLIEKVQDI 399

Query: 419 KLRYYYSQAIRDRLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L+    + +  +L      +   +     +Y  +  +++  KG    L           
Sbjct: 400 VLQSLLLENLAYKLGMNGADELRRKLGFSSKYQGQTLQNKALKGRGTPL----------- 448

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                     +  L+ HP +     + L         L+ +        +        ++
Sbjct: 449 -------RLAIALLVQHPML----GEGLPMQ----PALKHIKMAGIDLLIHLLDITRVQV 493

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                     E  +   +      L     +    +++Q +++ L ++   + + ++ +E
Sbjct: 494 KN---SAQLLEQYRDAPQLGTLKKLTRWDHQVADENLQQEFRKTL-IWLNNQYIEQRYQE 549

Query: 598 IEKQIAQVTAKGEAEKTAILISILH 622
           +   + Q   K E  + + LI+++ 
Sbjct: 550 L--SLKQNHTKEERIQLSKLIAVIQ 572


>gi|226939394|ref|YP_002794467.1| DnaG [Laribacter hongkongensis HLHK9]
 gi|226714320|gb|ACO73458.1| DnaG [Laribacter hongkongensis HLHK9]
          Length = 584

 Score =  339 bits (869), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 188/602 (31%), Positives = 279/602 (46%), Gaps = 48/602 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+DFI  LL  + I +++ +YV   +        DY ACCPFH EK+PSF  + +K FY
Sbjct: 2   IPQDFIDQLLSRVDIVDVVERYVPLKKAGR-----DYMACCPFHKEKSPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ----TDLI 118
           +CF C   G  +SFL    G  F+++V  LA   G+ +P V  +  ++E  +      L 
Sbjct: 57  HCFGCGAHGTAISFLIEHGGYGFVDAVSELAQQVGLTVPQVAQEAAREEAQRRQTAETLH 116

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            ++  A  F+   LK +       YL  RG+       F LG+AP  R +L+        
Sbjct: 117 DVMLEAARFYKRELKRS--TLAIDYLKRRGLTGEIAARFGLGWAPAGRTALQGVFPDYLD 174

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
               ++EAGL+I  D+ +  YDRFR R++FPIR  RG+VIAFGGR L KGE  KYLNSPE
Sbjct: 175 DR--LLEAGLVIRRDDGSR-YDRFRERVMFPIRDVRGRVIAFGGRILDKGEP-KYLNSPE 230

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF KG+ LY  F     +++  R          +++VEGYMDV++L Q GV   V++L
Sbjct: 231 TPLFEKGRELYGLFEGREAIRERNR----------VLVVEGYMDVVALAQHGVPYAVATL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T   +  L++ + R+V CFDGD  G RAA++A++ VL  L  G RV+F+ L    D
Sbjct: 281 GTSTTSTHVHKLFRHADRVVFCFDGDKAGQRAAWRALENVLPELRDGKRVDFLFLPVEHD 340

Query: 359 PDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PDSF+R YG  A E  I + SLPL   L +        ++ + RAEL    K  +  +K 
Sbjct: 341 PDSFVREYGAEALEDWIQQRSLPLSVYLTQELAARVDLDSDEGRAELLNLAKPLVMQVKT 400

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             L     + + +  +                 +K+     + G    +           
Sbjct: 401 PALAVLLRKKLAELARLSLDDLDRLWGLRKGLGRKSGPPPVRGGHRSEMSPV-------- 452

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                    L+  L+  P + +    E   +     E + L   L              +
Sbjct: 453 -------RWLIRALLLEPVLAEAV--EWPAVESLAGEARTLAE-LAELIQNGGVTGSVTL 502

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATT--EANIVDVRQGYQQALALYKRFRLLSRQK 595
            +RL E   GE L  L   +      +AT   +  +  V Q Y Q     +R   L+R+ 
Sbjct: 503 QERLRETALGEQLDPLWATLLADPAATATPLRDEFVAMVEQFYGQL--NRERVEQLTRRA 560

Query: 596 EE 597
            E
Sbjct: 561 AE 562


>gi|257063659|ref|YP_003143331.1| DNA primase, catalytic core [Slackia heliotrinireducens DSM 20476]
 gi|256791312|gb|ACV21982.1| DNA primase, catalytic core [Slackia heliotrinireducens DSM 20476]
          Length = 618

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 165/646 (25%), Positives = 278/646 (43%), Gaps = 47/646 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + P D I+ +     +  ++G  V   +R       D+W CCPFH+EKTPSF  + +   
Sbjct: 3   SIPEDDIRKVREASDLVAIVGDRVPLRQRGR-----DFWGCCPFHNEKTPSFKVDPNTQL 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           ++CF C   GD +SF+  L    F ++V+ LA  AG+ +   D +       +  L  + 
Sbjct: 58  WHCFGCGEGGDVISFVMKLDDIGFADAVRELARRAGIQITE-DERERAVRGKKARLKEVC 116

Query: 122 EVATDFFHHSLKNARDK---RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           E    F+H  L  +RD+       YL  R +     + + LG+AP  R +L  HLR  GF
Sbjct: 117 EATAAFYHTQLMRSRDEGAASARSYLGSRDLGGTIPKTWNLGFAP-GRGALVRHLRSLGF 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +++++I+A + +  + +    DRF NR++FPIR + G  IAFGGR + KGE  KYLN+ E
Sbjct: 176 TQQQMIDANVALISNRTNKLQDRFYNRIMFPIRDAEGDTIAFGGRVIGKGEP-KYLNTQE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LFHK + L+    A   +           S+   I+VEGY DV+ L +AGV+NVV++L
Sbjct: 235 TALFHKSQVLFGLDMAKGAMA----------STGIAIIVEGYTDVIVLHEAGVKNVVATL 284

Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAID-----LVLCHLIPGNRVNFVL 352
           GTALT   +R L      +IV  FDGD+ G RAA +A       ++         +    
Sbjct: 285 GTALTAQHVRQLSRHAKNKIVYLFDGDEAGQRAADRAARFVDESMLPEAGRKQVGLYACT 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L    DP  F++  G  A + L+ ++ PL+     R+   R      E++ +   +   +
Sbjct: 345 LPDNLDPADFVQQRGADALKVLLDDAKPLMRYAIDRKLAARDLTDYAEKSRVLPEVIELL 404

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG--RYWKKNARHRDQKGPSQRLMQSS 470
             I+   +   Y   + DRLQ   +    + +     R   + A    Q+  +    Q +
Sbjct: 405 APIRQSLMAQEYVNYLADRLQVDSRVIQDKLANARVPRPMGEAADGPAQQPAAPANAQPA 464

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
                  ++    E   L     HP I  +   ++A   + +     +   L +   E  
Sbjct: 465 FELSSKERERLRIEQEFLALAATHPQIGIQFAAQIARTMWRSRNHGAIAEGLLTMLAEYP 524

Query: 531 YFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                E+   L     G   +L           +  AT  +  + +R   Q  L++    
Sbjct: 525 QATAAELITALDAACPGSRSVLTSASSYDVSDPVRLATFLSEELAIRDMEQNILSMN--- 581

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                   EI+       +    ++  IL + +  +  ++  +   
Sbjct: 582 -------AEIK------DSSLTDDERNILYASVVALQKELAALRRS 614


>gi|293556715|ref|ZP_06675278.1| DNA primase [Enterococcus faecium E1039]
 gi|291601047|gb|EFF31336.1| DNA primase [Enterococcus faecium E1039]
          Length = 613

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 151/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+ +     I  +IGQYV   +   N     Y   CPFH+E+TPSF   + K  
Sbjct: 4   RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           ++CF C   G+  +FL  L G SF E+V ++A    +PL          ++  E     L
Sbjct: 59  FHCFGCGKGGNVFTFLQELEGLSFPEAVVKVADFEQIPLEDQWRQRTIAVQNPESATGKL 118

Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I   E A + +HH  L     +    YL  RG+    IE F +G+AP+ R  L++  + +
Sbjct: 119 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231
             S E +  +GL +   +     DRF  R++FP+R+S+GQ I F GR L+       +  
Sbjct: 179 SISNELLERSGLFV-THDDGRMSDRFYQRVMFPLRNSQGQTIGFSGRWLAPEKGQEKDQP 237

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF+K + L+N   A + ++K          +  I+L EG+MDV++  QAG+
Sbjct: 238 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEILLFEGFMDVIAAWQAGI 287

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           +  ++S+GT+LT  Q++ + KL+  +V C+DGD+ G  A  + I+L+  +      ++ V
Sbjct: 288 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSR--LALSVV 345

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410
           ++    DPD ++R YG+ +F++L+      V     R  +       ++   E    L  
Sbjct: 346 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLDNEKDKIEYLEELLV 405

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +     +  Y   +    Q   +    +     R  ++N +   +   +Q   Q +
Sbjct: 406 ELSRVVSPIEQDMYLSQLSTEFQIGRETIQKQLRDLRRTNQQNLQEPQESQHTQVTRQET 465

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
             K +   +    E  LL       ++     +   + ++ ++   +++    +   +  
Sbjct: 466 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 523

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            F   E    L +     L+ +++             E++  ++     Q L        
Sbjct: 524 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 571

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           L+ +    ++   +    G  +    L   +  +  Q+ Q +
Sbjct: 572 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 613


>gi|330821205|ref|YP_004350067.1| DNA primase [Burkholderia gladioli BSR3]
 gi|327373200|gb|AEA64555.1| DNA primase [Burkholderia gladioli BSR3]
          Length = 626

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 169/658 (25%), Positives = 277/658 (42%), Gaps = 67/658 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G++V   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPSSFLQDLLNRVDIVDVVGRFVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---------------DPKI 107
           +CF C   G  + FL    G SF E+VQ LA   G+ +P                     
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLSFPEAVQELAQSVGLTVPHEPSTRGGGGGGYGGEGSSLP 116

Query: 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167
              + + T L  +++ A+D++   L+         YL +RG+       F LGYAP+   
Sbjct: 117 AASKSVTTALTDVMQTASDYYRKQLRG--ATNAIQYLKKRGLTGEIAMRFGLGYAPEGWQ 174

Query: 168 SLREHLRQKGFSEEK---IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT 224
           +L                ++      D   +A  YDRFR R++FPIR+ +G VI FGGR 
Sbjct: 175 NLETAFEDYRADTLVDAGLVIVSEKTDAQGTARRYDRFRERIMFPIRNVKGNVIGFGGRV 234

Query: 225 LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284
           L  GE  KYLNSPET LF+KG  LY  F A   ++             + ++VEGYMDV+
Sbjct: 235 LDSGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------DQKYALVVEGYMDVV 283

Query: 285 SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344
           +L Q G  N V++LGTA T   ++ L + +  +V  FDGD  G RAA +A++  L H   
Sbjct: 284 ALAQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAAD 343

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
              + F+ L    DPDS++R +G  AF   +  ++PL   L       +  + P+ RA+ 
Sbjct: 344 NRTIRFLFLPTEHDPDSYVREFGAEAFSDQVRRAMPLSQFLLNEAIAGKELDQPEGRAKA 403

Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
               K  +  +    LR        DRL   F++         R                
Sbjct: 404 LFEAKPLLQALPANALRAQIMHMFADRLNIPFEEVAGLSDVDARIA-------------- 449

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                        ++ +  E   L  L+ +P I+    ++            +L+  + +
Sbjct: 450 -APARQAPARADRRRVTDHEKRTLRNLVMYPRIVALLDEDDVATLRGLPRNGELFDEVLA 508

Query: 525 DFVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQ 576
              E         L + +        + E+ +++   D  VR+  L S   EA    VR+
Sbjct: 509 ISRELGNAAEFRLLSDVLRNTTNAETYDEIFREILDYDENVRELLLQSPEDEAGQEAVRE 568

Query: 577 GYQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +      +A  L  R+   + +  ++ +Q     +  E  +   L     ++  ++
Sbjct: 569 RERIAGEELKAAVLKMRYDACNDRLNQLSRQ--STHSPEELTELMALNRARTDMKAKL 624


>gi|94971323|ref|YP_593371.1| DNA primase [Candidatus Koribacter versatilis Ellin345]
 gi|94553373|gb|ABF43297.1| DNA primase [Candidatus Koribacter versatilis Ellin345]
          Length = 640

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 162/651 (24%), Positives = 284/651 (43%), Gaps = 53/651 (8%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
           P DF  DL     I  +IG+YV   +        +Y   CPFH+EK+PSF  + S+ F++
Sbjct: 21  PGDFAYDLKQQADIVRVIGEYVQLRKAGAQ----NYAGLCPFHNEKSPSFSVHQSRQFFH 76

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLIRL 120
           CF C   GD  +F+  +   +F E+V+ +A   GVP+P      P+  ++ K++  L+  
Sbjct: 77  CFGCGASGDVFTFIQKIENITFPEAVRSIAQKLGVPMPKVEYASPQEAREAKMRGALLDA 136

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E+A  +F   L+         YL  RG+D+  +E F++G+AP+S + LR+ ++ +   E
Sbjct: 137 NELACAWFQEQLRKPDAAHAREYLKSRGLDAETVEKFRIGFAPESGFLLRDRMKGEFNEE 196

Query: 181 EKIIEAGLLIDGDNSAT----------SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
                       D +             Y +FRNR++FPIR+ +G+VIAF GRTL+  E 
Sbjct: 197 ILRESGLFSWKEDATRDSESAKSAPSALYAKFRNRIMFPIRNEQGKVIAFTGRTLATDEK 256

Query: 231 --VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
              KYLNSPET ++ K + L+N   A   ++             + ILVEG MD +SL +
Sbjct: 257 SGPKYLNSPETAIYSKSRVLFNLNLAKEAIR----GSKDAPGLGYAILVEGQMDCISLYR 312

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
             V NV+++ GTA TE+Q +LL + + ++V+ FD D  G  AA +++ L    +    ++
Sbjct: 313 EDVHNVIATSGTAFTEFQAKLLGRFTKQVVVNFDPDTAGAAAAERSLAL---LVSEDFQI 369

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
             + L  G DPD +IR  G+ A+   +  S    D L  R  +     TP+ + +   +L
Sbjct: 370 RVLTLEPGFDPDLYIRKKGREAYAYALKHSQKYFDYLIDRARKQYPTGTPEGKLKAVNYL 429

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              I  +  + +R   +  I  +LQ        E           +              
Sbjct: 430 LPHIQRLSSKLVRDEIAMDIAHKLQIDSTVLKEELRHVAGSRTATS-------------- 475

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
              VK   + + +  E  L+  L +   + ++          D    +++   L ++ + 
Sbjct: 476 ---VKASAAPQITPIEKMLIRALASSNQLAKDPVSSREGQDLDFEAARQVHYVLANETLH 532

Query: 529 QKYFLPEEIHQRLC--ERGFGEL---LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                   I   L   E G   +   L + DR+     L   T       +   +     
Sbjct: 533 AGLQTERLIAALLKAVEDGSDPMTLPLGEGDRRTLATILMGDTETLTPEAMEGAFAS--- 589

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              R R +  ++ ++  +I     KG++     L     ++  +I +++ +
Sbjct: 590 --LRLRRMKARRSDLVVEITAAERKGDSAALGRLSLEKMQLDREIRELDEE 638


>gi|312143991|ref|YP_003995437.1| DNA primase [Halanaerobium sp. 'sapolanicus']
 gi|311904642|gb|ADQ15083.1| DNA primase [Halanaerobium sp. 'sapolanicus']
          Length = 623

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 163/635 (25%), Positives = 279/635 (43%), Gaps = 42/635 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            Y  DFI +L  +  I +L+  YV+  +         Y   CPFH EKTPSF  N    F
Sbjct: 27  RYSDDFIDELKTNADIVDLVSDYVELQKSGN-----RYKGLCPFHSEKTPSFFVNPDNNF 81

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   GD ++F+  +   +F E+++ LA  +G+ LP +     ++ K +  L  L 
Sbjct: 82  YHCFGCGAGGDLINFVMEIENLTFAETIKVLAERSGMELPDLSDAQRQRYKEREKLFALN 141

Query: 122 EVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            +A  F+++ L      K+   YL  R I+   I+ F++GYA D    L   L+++ FS 
Sbjct: 142 NLAAKFYNYILLEKEIGKKALEYLKNRDINESDIKQFQIGYAADEWQLLLNFLKKRNFSL 201

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK---YLNSP 237
           + I +AGL I    + + YD+FRNR+IFPI ++RG+VIAFGGR L    +     YLNSP
Sbjct: 202 DLIYKAGL-ITKGKNNSYYDKFRNRVIFPIYNNRGEVIAFGGRILETEAAEYGPKYLNSP 260

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +F K KNLY    A + ++K           +  I++EGY D++   + G +N ++S
Sbjct: 261 ETAIFSKKKNLYGLHLAKDSIRKK----------NSCIIMEGYTDIIQAHKNGFKNSIAS 310

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA TE Q +L+ + + +  + +D D  G  A  + +D+       G  V  + L  G 
Sbjct: 311 LGTAFTEEQAKLIKRYAEKAYIAYDADTAGNMATLRGLDI---LSDAGIDVKVIQLDEGN 367

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD  +R  G   F   +  +L LVD   +   +++  + P  R ++   +   I  I D
Sbjct: 368 DPDDLLREEGAEIFFDHLDSALSLVDFKIEMIIQDKDLDEPGVRLKVLKSIIKLIAEIDD 427

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  R  Y +   ++     +    E     +  K     RD +  +    +  L      
Sbjct: 428 ELKREIYLERAAEKTSFKTEVLSKEVKKEVKKNKSRNYRRDIEKINSASKKVDL--NTQI 485

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  +L   I    + +E  + L    +     Q     L     + K       
Sbjct: 486 SYYQKIEEQILAYYITQAELREEISEILTPDDFTGRAAQ-----LADLLFQGKVISASVK 540

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           ++ + +    EL            +    +  +   + +     LA Y     +S+ KE+
Sbjct: 541 NESIKDELDDELFS-----YWTEIIVKQKSGLSEERILE-----LAEYISSYKISKSKEK 590

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           I   +       + +K   +++   +++  I + +
Sbjct: 591 ICSYL--ANKNFDLDKLNTILTTFQKMNYNIERRD 623


>gi|88858405|ref|ZP_01133047.1| DNA primase [Pseudoalteromonas tunicata D2]
 gi|88820022|gb|EAR29835.1| DNA primase [Pseudoalteromonas tunicata D2]
          Length = 583

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 150/630 (23%), Positives = 274/630 (43%), Gaps = 58/630 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   +   +        DY ACCPFH+EK+PSF  +  K F
Sbjct: 4   KIPRSFIDDLLARTDIIDLIDNKIGLKKTGK-----DYQACCPFHNEKSPSFTVSQDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116
           Y+CF C   G+ +SF+       F+++++ LAA   + +P           +   + +  
Sbjct: 59  YHCFGCGAHGNAISFIMEYEKLEFVDAIEELAANLHLEVPREQTAGQSSAPQVSAEQKRS 118

Query: 117 LIRLIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
              L+  A++F+ H LK+ ++      YL  RG+    ++ + +GYAP     L + L +
Sbjct: 119 DYDLMLQASNFYQHQLKHHQNSADVISYLKGRGLSGQTVKKYMIGYAPTEWDGLCKQLAR 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
               ++++ +  L  +       +D FR+RL+FPIR  RG+VIAFGGR L      KYLN
Sbjct: 179 TKDQKQQLTDLKLASEKTPGRQ-FDFFRDRLMFPIRDKRGRVIAFGGRVLQGDNGPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +FHKG  LY  + A    +K           + I++VEGYMDV++L + G++  V
Sbjct: 238 SPETRIFHKGFELYGLYEAKQAFKKL----------TQIMVVEGYMDVVALSEQGIEYAV 287

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T   ++ L++ + +++ C+DGD  G  AA++A++  L +L  G  + FV L  
Sbjct: 288 AALGTATTSEHMQTLFRATDKVICCYDGDRAGKDAAWRALENALPYLNNGKALLFVFLPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPDS ++  GK  FE+ + ++     +L++R +      T   +A+L       I  +
Sbjct: 348 GEDPDSLVQKEGKALFEQRLEQASDFTKVLFERLSLELDITTDAGKAKLMSLALPMIEKV 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                +    + +   + +  ++   +     +     ++ +                  
Sbjct: 408 PSDFYQENLLEKLARLIGRTREQLNQKIKNPRQQQSLKSKFKMTPM-------------- 453

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                       +  L+ HP +          +  +   L  L+  L +  ++       
Sbjct: 454 ---------RIAIGLLLQHPQLANSIPYAPELVELNLPGL-ALFKQLQALCLKHNQINTG 503

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +I +   E    + L  L              + +   + + ++     +   + L+ + 
Sbjct: 504 QILELYRESSDFKALSMLAGW---------QHQIDEGQLEEYFKNTFK-FIEDQCLNHRL 553

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           E +   I   T     ++      +   + 
Sbjct: 554 ETLL--IKDKTQGLNKDERLEYSLLTQALK 581


>gi|303238089|ref|ZP_07324629.1| DNA primase [Prevotella disiens FB035-09AN]
 gi|302481724|gb|EFL44779.1| DNA primase [Prevotella disiens FB035-09AN]
          Length = 643

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 156/652 (23%), Positives = 272/652 (41%), Gaps = 55/652 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  +  +L    I ++I +YV   +         Y   CPFHD+ TPSF  N +KG Y
Sbjct: 2   IDRPTVDRILEAADIVDVISEYVTLRKAG-----VSYKGLCPFHDDTTPSFSVNPAKGVY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G  + FL      ++ E+++ LA   G+ +   +   E+K  E  +  +  +
Sbjct: 57  KCFACGEAGSVVKFLMQYDQLTYPEALRVLAKKYGIEIKERELTSEEKQLENERESMFLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A ++FH +L+N  D +     Y   RG     IE F+LG+  + R        + G+
Sbjct: 117 NEWAANYFHETLRNNPDGQAIGMQYFRSRGFRDDIIEKFQLGFCLNGRQDFANAALKAGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
            +E +++ GL  + +N     DRF  R+IFP  S  G+VIAFGGR L    KG S KY+N
Sbjct: 177 KKEFLVKTGLCFERENGDIL-DRFNGRVIFPWVSVSGKVIAFGGRLLDSRTKGISQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP + ++ K   LY  + A   + K             + +VEGY DV+S+ Q G++NVV
Sbjct: 236 SPGSEIYQKDHALYGIYQAKKAIGKF----------DLVYMVEGYTDVVSMHQCGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ YQ+++L + +  IVL +DGD+ G  AA +  D++L     G  V  +L+  
Sbjct: 286 ANSGTALSTYQIKILRRFTSNIVLLYDGDEAGQHAALRGTDMLLSE---GMNVKVLLIPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPD   R      F K I ++     +           +           +   I  I
Sbjct: 343 GKDPDELARTLTAEQFRKYIDDNQTDFIVFKINVLLQGVTDPVKRSEA-INSIVQSIAVI 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGY-GRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           KD  LR  Y +    R        I + + +     ++  + + ++    +     L   
Sbjct: 402 KDPILRDTYLRECAHRTGMKESTLIRQMNRFIYNDKEQERKEKVREAEQTQQDAQPLRPA 461

Query: 475 KLSKKPSLREAALLLTLINHPA--ILQEQYQE-------------------LADIRYDNN 513
              ++ S  E  L+  ++      IL++   E                   L ++ + N 
Sbjct: 462 TPMQQASKVETMLVQAIVRDGEKIILRDIENEETGEKISLNVAQYIAYDLGLDNLSFANP 521

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
              ++ +       ++ +   E   +          L             S   + +  D
Sbjct: 522 MSIQILTEAVEHSNDEGFKAEEYFTKH--SDIQISTLAINLSVENFHLSQSMQVKESEED 579

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           +R      +  Y R   +    +E++  + Q   + + EKT  ++  + E+ 
Sbjct: 580 LRDRIMHLILDY-RMDYVEHHLKELQTNLLQ---EKDLEKTMNMMKEIKELQ 627


>gi|41408228|ref|NP_961064.1| DNA primase [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41396583|gb|AAS04447.1| DnaG [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 650

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 135/647 (20%), Positives = 241/647 (37%), Gaps = 37/647 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   I  +   + I  ++G YV   R             CPFHDEK+PSFH   + G +
Sbjct: 21  IPDRDIAAIRERVRIDEVVGDYVQLRRAGA----DSLKGLCPFHDEKSPSFHVRPNHGHF 76

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
           +CF C   GD  +FL  +   SF+E+V+ LA   G  +    P    +     ++ LI  
Sbjct: 77  HCFGCGEGGDVYAFLQKIEHVSFVEAVELLADRIGHTITYSGPATSVQRDRGSRSRLIAA 136

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A +F+  +L++        YL ER  D+ A   F  G+AP    +L +HL++KGF  
Sbjct: 137 NAAAAEFYAAALESDEAAPARQYLTERNFDAEAARRFGCGFAPSGWDTLTKHLQRKGFEF 196

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238
           +++  AGL           DRF  RL++PIRSS G+VI FG R L   + +  KY+N+PE
Sbjct: 197 KELEAAGLSRQ--GRRGPMDRFHRRLLWPIRSSAGEVIGFGARRLFDDDPMEAKYINTPE 254

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T+L+ K   ++    A   + K              ++VEGY DV+++  AGV   V+S 
Sbjct: 255 TLLYKKSNVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVASC 304

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDG----DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           GTA  +  L +L +L               D        A+           +    +  
Sbjct: 305 GTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDAAGRAAALKAFGGEQNLAGQSFVAVAP 364

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G DP       G  A   L+    PL +   +        ++ + R          +  
Sbjct: 365 DGMDPCDLRLRSGDAALRDLVARRTPLFEFAIRSALAELDLDSAEGRVAALRRCVPMVAQ 424

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS----- 469
           IKD  LR  Y++ +   +       + +           A          R  +      
Sbjct: 425 IKDPTLRDEYARQLAGWVGWSDVAQVIDRVRSQSKHSAGAGRGGSGARVSRRAEQSAAPA 484

Query: 470 --SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             +  +          +   L + + +PA+    +  L    + +     + + + +   
Sbjct: 485 GPAASRPDPRDPTLWPQREALKSALQYPALAGPVFDSLTVESFTHPGYAAVRAAIEAAGG 544

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                   +  + + +R    L   L  ++    +     +         Y   +    +
Sbjct: 545 TSSGVTGGQWIEAVRDRASSPLTAGLISELGVEAIQVDDEKLP------RYIAGVLARLQ 598

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              + RQ  E++ ++ +++   + ++   L   L  +      +  Q
Sbjct: 599 EVWMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 645


>gi|255037124|ref|YP_003087745.1| DNA primase [Dyadobacter fermentans DSM 18053]
 gi|254949880|gb|ACT94580.1| DNA primase [Dyadobacter fermentans DSM 18053]
          Length = 674

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 170/679 (25%), Positives = 284/679 (41%), Gaps = 73/679 (10%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + ++ +     I  ++G +V   ++  N     Y ACCPFH+EKTPSF+ N  + 
Sbjct: 1   MRINPETVERIKHAADIVEVVGDFVSLKKKGAN-----YSACCPFHNEKTPSFNVNPVRQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEKIQTDLI 118
            Y CF C   GD + F+  + G  + E+++ LA    +      +  +   ++  +  L 
Sbjct: 56  IYKCFGCGAAGDSIKFVMDIDGIGYGEALRYLAGKYNIEVEEEELTDEETLRQNARESLY 115

Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            ++  A +++ H L ++ + +     Y  ERG  S   + F+LGY+ D+  S  +   +K
Sbjct: 116 IILNFAKNYYQHQLHHSDEGQAIGLSYFRERGFTSEIRKKFELGYSLDNWDSFSKEALEK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATS-YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYL 234
           G+S E +  AGLLI  + S T+ YDRFR R+IFPI +  G+ IAFG R L   +   KYL
Sbjct: 176 GYSAEILERAGLLIHKEGSHTAGYDRFRGRVIFPIHNIAGKTIAFGARILKTDKNQPKYL 235

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET ++HK + LY  + A N +++               LVEGY DV+SL QAG++NV
Sbjct: 236 NSPETEVYHKSEVLYGIYQAKNAIRQL----------EHCYLVEGYTDVISLHQAGIENV 285

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S GT+LT  Q+RL+ + +P I + +DGD  G++AA + +DLVL     G  VN VL  
Sbjct: 286 VASSGTSLTVEQIRLIGRFTPNITILYDGDMAGIKAALRGLDLVLEE---GLNVNVVLFP 342

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
             EDPDS++R  G  AF+  +  +               + N P + A +   + N I  
Sbjct: 343 DNEDPDSYVRRVGAEAFKAHLKSASKDFITFKTEILLQDAGNDPFKLAAVIQEVVNSIVK 402

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I D   R  +     + ++   Q  ITE +   R           +  +     S+  +G
Sbjct: 403 IPDAIKRQVFFHRTSEMMRVDEQMLITEGNKLLRKQHSAKPAERPRQSNAGGQGSAGTRG 462

Query: 475 KLSKKP--------------------------------------SLREAALLLTLINHPA 496
                P                                        +E A +  L+ H A
Sbjct: 463 PEFDGPPDLDALFSDGFGPFGGEPDDNPFVPTEHAPEAFQRTKLHYQEEAFVRLLVVHGA 522

Query: 497 --------ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                   + Q    ++  I   +     L +    +F +      +   Q         
Sbjct: 523 RELEPTITVCQYVLGQIEGIELKDPVYSHLLNLFRENFGKNNVLTTDYFLQHHEAEIRNL 582

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA---LALYKRFRLLSRQKEEIEKQIAQV 605
            ++ L ++   + LW    E  +        +      L  +   +  + +   + +AQ 
Sbjct: 583 TIEWLTQKHELSELWKEKYEIYVPFETDVLDRTAFNNILRLKKAFVEEKMKTCIQNMAQA 642

Query: 606 TAKGEAEKTAILISILHEV 624
               E +           +
Sbjct: 643 KTGEEQDAIMNEYQFYKGI 661


>gi|320533870|ref|ZP_08034452.1| DNA primase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133896|gb|EFW26262.1| DNA primase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 687

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 145/684 (21%), Positives = 263/684 (38%), Gaps = 72/684 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ I+ +     + +++G++V           G     CPFHDE+TPSFH     G++
Sbjct: 21  IRREDIEAVRERARLEDVVGEHVTLKSAG----VGSLKGLCPFHDERTPSFHVRPQLGYW 76

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLIR 119
           +CF C   GD ++F+  +    F E+V+ LA   GV L   +    ++      +  L+ 
Sbjct: 77  HCFGCGEGGDVITFIEKINHLGFAEAVEYLADRTGVQLRYEEGGAVRRGVEPGTRQRLMD 136

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              +A  +F   L     +    +L  RG D HA   F +GYAP     L  +LR  G++
Sbjct: 137 ANRLAEAWFREQLATPEAQPGRDFLTARGFDRHAAAHFGVGYAPAGWDHLTRYLRSAGYT 196

Query: 180 EEKIIEAGLLID-GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSP 237
           E +++++GL    G +    YDRFR RLI+PIR   G  + FG R L  + +  KYLN+P
Sbjct: 197 EAELVDSGLCSRGGQDGRRVYDRFRGRLIWPIRDVTGATVGFGARKLSEEDQGPKYLNTP 256

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK + LY    A   + +S R          I++VEGY DV++   +GV   V++
Sbjct: 257 ETPVFHKSQVLYGLDLAKREVARSHR----------IVVVEGYTDVMAAHLSGVTTAVAT 306

Query: 298 LGTALTEYQLRLLWK--------------------LSPRIVLCFDGDDPGLRAAYKAIDL 337
            GTA     +R++ +                        ++  FDGD  G +AA +A   
Sbjct: 307 CGTAFGADHVRVVRRLLGDVDDPAAGVVTGQGREARGGEVIFTFDGDAAGQKAALRAYAE 366

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397
                    +    +   G DP       G T   +L+   +PL + + +    +   +T
Sbjct: 367 DQRFAT---QTFVAVDPGGLDPCDLRMKEGDTGIPRLLSRRVPLFEFVIRTSLSHLDLDT 423

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            + R          +  I+D+ L+  Y++ +   L     +        GR   + +  R
Sbjct: 424 SEGRVRGLRSAAPVVAGIRDRALKREYTRRLAGWLGLPDAEVHAAVQAAGRRGAQPSAAR 483

Query: 458 DQKGPSQRLMQSSLVK-----GKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYD 511
             + P+                 ++      E   L  +I  P         E+    + 
Sbjct: 484 GGQWPTDETAGPDAAAPVRGLPPVTDPVEQLEREALAVIIQFPVAAHHAGADEMGADSFG 543

Query: 512 NNELQKLWSFLFSDFV-------------------EQKYFLPEEIHQRLCERGFGELLKQ 552
               + ++  + +                      E +        Q++ +     +   
Sbjct: 544 QLTHRAVYEAVAAAGGTAEVLGLVQQAVSAGTGEQEAQRRATLRWLQQVRDGAIDLVEAA 603

Query: 553 L-DRQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           + +  V    L +       VD    + Y + +        ++R+  E+  +  +++ + 
Sbjct: 604 ITELAVAPLPLPTIRGRGTEVDASGLERYAKGVLGSLAVMGINRRLVEMRSRHRRMSPQ- 662

Query: 610 EAEKTAILISILHEVHIQIHQIES 633
             E    L S +  +  +  QI  
Sbjct: 663 -EEGYRELFSQIAALEQRRMQIRQ 685


>gi|160871626|ref|ZP_02061758.1| DNA primase [Rickettsiella grylli]
 gi|159120425|gb|EDP45763.1| DNA primase [Rickettsiella grylli]
          Length = 585

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 171/596 (28%), Positives = 274/596 (45%), Gaps = 46/596 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P++FI +LL  + I  LI   V   ++  N     Y ACCPFH EKTPSF     K FY
Sbjct: 6   IPQEFINELLARVDIVQLIDARVPLRKKGKN-----YIACCPFHSEKTPSFTVTPEKQFY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           YCF C + G+  +FL      SF+E+V  LA   G+ +P    + ++  K   +L  L+E
Sbjct: 61  YCFGCAISGNAFNFLMDYEKLSFLEAVSILAESLGMEIPHAAKQ-QEVYKDSANLYTLLE 119

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               F+ +  +  ++K + YYL +R +    +  F+LGYAP    +L +  ++     E+
Sbjct: 120 EVAQFYAN--ERQQNKTVRYYLKQRNLSDEIMTQFRLGYAPLGWDTLLKAFKK---ETER 174

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++  GLLI        YDRFR+R++FPIR  +G+VI FGGRT+++GE  KYLNSPET+LF
Sbjct: 175 LLTVGLLIKKSKGQGYYDRFRDRVLFPIRDRKGRVIGFGGRTVTQGEP-KYLNSPETLLF 233

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           HKGK LY  +    + +   R          I++VEGYMDVL+L QAG    V++LGTA+
Sbjct: 234 HKGKELYGLYEVFQHNRHVER----------ILVVEGYMDVLALFQAGFPFAVATLGTAM 283

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           +  QL  L   +  I+ CFDGD  G +AA++ ++  L  L  G    F+ L  GEDPDSF
Sbjct: 284 SRDQLSRLMSHTQEIIFCFDGDSAGKKAAWRVLEQSLALLTDGYIFRFLCLPHGEDPDSF 343

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I+  G   F   + ++  L + L+            + +A L       I  +    ++Y
Sbjct: 344 IQKKGADEFMTFMEQAQSLTEFLFSGLLAQVDITQLEGKARLAKLAVPLIEKVTQGIMQY 403

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              + +   +           +    +  K  + +                         
Sbjct: 404 KLFEQLARLVNIDVMTLKKITTHTTNHPLKTMQKKINPVSKVNRFSPM------------ 451

Query: 483 REAALLLTLINHPAILQEQYQE----LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  LI  P I Q    +    L  ++   ++   L   LFS   +Q       + 
Sbjct: 452 --RLAIALLIQFPHIAQSLSDKQCQILNTLKLPGSD---LLVQLFSVIKQQPELTSAMLL 506

Query: 539 QRLCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           +   +     ++LKQL        +  +  +A   D+ +  ++++   +   LL +
Sbjct: 507 EYWRDDEVHYKILKQLMGYSIT--IPKSGVQAEFDDLLKFLKKSVIENQIDNLLQQ 560


>gi|223558007|gb|ACM91013.1| DNA primase [uncultured bacterium URE4]
          Length = 658

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 166/672 (24%), Positives = 292/672 (43%), Gaps = 67/672 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P++ ++ +L    + +++G +V   RR +       WACCPFH+EKTPSFH   S+G Y
Sbjct: 2   IPQETVQLILDTARVEDVVGDFVTLKRRGS-----SLWACCPFHNEKTPSFHVEPSRGIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIRL 120
            CF C   G  + F+      S+ E+++ LA    + +       +     +    L+ +
Sbjct: 57  KCFGCGKSGTAVGFVMEYEKLSYTEALKYLARKYHIEVKEKEESAEDIAARQRNESLLAV 116

Query: 121 IEVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E A DF+   L     + +   Y   RG++   I  + LG+AP S+ +L E  +++G+ 
Sbjct: 117 SEFAFDFYKDQLATDEGRAVAVQYFHSRGLEDETIAKYGLGWAPKSKNALTEAAKKEGYK 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238
           +E ++E GL    D   + +DRF +R++FPI S  G+VIAFGGRTL   +SV KY+NS E
Sbjct: 177 DEYLLETGLCAQWDTDGSLHDRFYDRVMFPIHSVSGRVIAFGGRTLFTDKSVAKYVNSKE 236

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + ++ K ++LY  + A + + +          +    LVEGY+DVLS+ Q G+ NVV+S 
Sbjct: 237 SEIYVKSRSLYGIYFAKSAISR----------ADKCYLVEGYLDVLSMHQLGITNVVASS 286

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT  Q+RL+ + +  + + +DGD  G+ AA + IDL    L  G  V  VL+  G+D
Sbjct: 287 GTSLTVEQIRLIKRFTENVTIMYDGDPAGIHAALRGIDL---ILKEGMNVKVVLIPDGDD 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS+ R +     E  I  +               + N P +RA L   + + +  I D 
Sbjct: 344 PDSYARKHTLEEVEAFIAANEQDFIAFKADLLLGEAGNDPLKRANLINDIADSVAGIPDA 403

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK--- 475
             R  Y+ AI  + +                 +   R + Q+   +   +  + + +   
Sbjct: 404 VKRSVYTDAISAKFRIDTDILTDRVRRTREKIQGEERTQAQREAIRARREEDVPRTQEAT 463

Query: 476 -------------LSKKPSLREAALLLTLI-----------------NHPAILQEQYQ-- 503
                         S   +  E  LL  ++                   P  + E     
Sbjct: 464 YTPPVNELRALETQSPILAPSERELLRFILMDGSTPLVFESDSEFYSESPQTVAEFIDTA 523

Query: 504 -ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL---CERGFGELLKQLDRQVRD 559
                I + N+  Q+ +   F+ +   K     EI + L    +     ++ QL     +
Sbjct: 524 LAGDGIVFANDAYQRTYEAYFALYDAGKEQD--EIVRDLLNGPDDAVRFVVSQLSGDKYE 581

Query: 560 AGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             + +        D  +     +A+  Y   R L   +  + +++A      + E     
Sbjct: 582 LTVKNFQAALTTRDSWLTNFVPKAILAYHIKR-LQADQTSLTRELATAGPDRQRELFT-T 639

Query: 618 ISILHEVHIQIH 629
           +  ++E+  +I+
Sbjct: 640 LERINELKKRIN 651


>gi|229818027|ref|ZP_04448309.1| hypothetical protein BIFANG_03315 [Bifidobacterium angulatum DSM
           20098]
 gi|229784631|gb|EEP20745.1| hypothetical protein BIFANG_03315 [Bifidobacterium angulatum DSM
           20098]
          Length = 687

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 142/695 (20%), Positives = 263/695 (37%), Gaps = 82/695 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I+ +     + +++   V           G +   CPFHDEKT SF+   + G +
Sbjct: 5   IKKEDIEKVRAAADLYDIVSASVSLKPSG----TGTFVGLCPFHDEKTGSFNVRPALGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIR 119
           +CF C + GD   F+       F E+V+ LA    + L        + E     +  L+ 
Sbjct: 61  HCFGCGLGGDVFKFVEEQENIDFREAVELLADKYHIELHYEQNGNARAEHSGSKRARLLE 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             E A  FF   +           L  R       E F  GYAP    +L  HL  +GF+
Sbjct: 121 ANEAAQRFFASQIMTKEALAARKLLGGRTFTQADCERFGCGYAPQGWDNLVRHLASQGFT 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
           ++++++AGL   G      YD FR R+ +PIR S G+ + FG R L   + +  KY+N+P
Sbjct: 181 QQEMLDAGLARQGQR--GVYDYFRGRVTWPIRDSTGRTLGFGARKLYDDDQIAAKYINTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T L+HK + LY    A   + K              ++VEGY DV+++  AGV   +++
Sbjct: 239 DTQLYHKNQVLYGIDLAKQAIVKK----------RQAVIVEGYTDVMAMHLAGVDTAIAT 288

Query: 298 LGTALTEYQLRLLW----------------------KLSPRIVLCFDGDDPGLRAAYKAI 335
            GTA  E   +++                        +S RIV  FDGD  G +AA  A 
Sbjct: 289 CGTAFGEEHAKIVRRLVKDDSLGAIQLVGPLKVDGQPVSSRIVFTFDGDAAGQKAALHAF 348

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
            L    L   ++    +     DP       G  A   L+  + PL D +          
Sbjct: 349 GLDPAFL---SQTFVAVAEHNLDPCDLRIEQGDEAVRALVARAKPLYDFVIGAAINRFDT 405

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ----QLFQKYITEHSGYGRYWK 451
           +    R      +   I  I+D+     Y++    R+      + ++ +       R   
Sbjct: 406 SYSTGRLGAVKAVAPLIAQIRDRSQVDLYTRQAARRIGGVDLDMMRREVERCRRQLRVRD 465

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPS----------------LREAALLLTLINHP 495
           ++A    ++    +    +++  ++ +                   + E   +  L+  P
Sbjct: 466 EDAYAPKRRLVQPQHADGAMMPERVRQIERENAHKQTFYHVDDAVFIAEEQFMAVLVQIP 525

Query: 496 AILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             ++ + +  L    ++ +  + L+  + +     +   P+ +      +  G +L+ + 
Sbjct: 526 NAIRVDWFDSLTPASFETSVFRALFQAVVAAGGLPETTTPQGLWMHNLTKAGGPMLEPVI 585

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQ--------ALALYKRF--RLLSRQK-----EEIE 599
            ++    L  A   AN  D +    Q        A     R+   LL+R         I 
Sbjct: 586 NELAVMPLPLADRSANGDDAQGQRVQSDANSPASATKAEVRYASELLARLLDMGFVRSIA 645

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              A+++   + E+   L+  +  +      +++Q
Sbjct: 646 SARARMSRLPDGEEKIALLGTITNMEASRKSLQNQ 680


>gi|332638575|ref|ZP_08417438.1| DNA primase [Weissella cibaria KACC 11862]
          Length = 637

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 143/659 (21%), Positives = 245/659 (37%), Gaps = 61/659 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   ++++   + I ++I  YV   ++  N      +  CPFHDE+TPSF  N+ K  
Sbjct: 6   RIPEHLVEEIRERVNIVDVISPYVQLKKQGRNL-----FGLCPFHDERTPSFSVNEDKQI 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118
           Y+CFSC   G+  SF+  +   +F ++V ++A  AGV L       E  E        L 
Sbjct: 61  YHCFSCGRGGNVFSFIMDIDNATFPQAVAKVAPFAGVDLDASYTADEPTETVDPQTKALR 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            L   AT  +HH L N                        +         L  +  ++G 
Sbjct: 121 SLYADATKLYHHLLVNTDAGDTALTYLHERGLDDGTIDAFMLGYAPENDVLYNYFNEQGV 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
             + +  + L I+  +  + +DRF NR++F IR + G  IAF GR LS  +S  KY+NSP
Sbjct: 181 DYQLLRASELFIE-WDDGSLHDRFTNRVLFTIRDAAGHPIAFSGRRLSNDDSQAKYMNSP 239

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ LF+K + L+N   A   ++K             ++L EG+MDV++  QAGVQN V+S
Sbjct: 240 ESPLFNKSQELFNLDLAKGAIRKQ----------KQVVLFEGFMDVIAAFQAGVQNGVAS 289

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT+LT  Q+++L +++ +I + +D DD G RA  +A+DLV  +         V +   +
Sbjct: 290 MGTSLTTEQVQVLSRMADKISISYDADDAGQRATKRALDLVAQNGK--MAATVVHIPDNQ 347

Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD F+R    +AF   L   +   +    +     R      E       +   I  + 
Sbjct: 348 DPDEFLRANDVSAFLNVLSHNTEDPIAFNIRYLRMGRDLTNQTEMFAYVSDVLGTIATVT 407

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +  +R  Y + I +           +        +    +  +    +      +     
Sbjct: 408 EPIMRETYLRQIGEEFNIGLDALQDQLRPLLLQQQARRSNPRRSNNKRPRQSERVADADF 467

Query: 477 SKKP-----------------------SLREAALLLTLINHPAILQEQYQELADIRYDNN 513
              P                          E  LL  ++    +  +      D  + + 
Sbjct: 468 GAAPYDEWQDSAPAPVPAPVAPTISRVEQAERMLLAWMLQDNDVWLQVTNT-PDFTFADV 526

Query: 514 ELQK---LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
             +    L S   S+   Q           + +     +L  LD             E  
Sbjct: 527 PYETIMMLASGYRSEHGNQPITDMACFMDYVQKADLTRILATLDTYA---------PELF 577

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
               R    + +        LS +   +++QI +          A L         +  
Sbjct: 578 TD--RSQVDEYIQFISHDAPLSDRINRLQRQIKEANQMHNDALVAQLSVEYLAALREQQ 634


>gi|118467186|ref|YP_881262.1| DNA primase [Mycobacterium avium 104]
 gi|118168473|gb|ABK69370.1| DNA primase [Mycobacterium avium 104]
          Length = 650

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 136/647 (21%), Positives = 242/647 (37%), Gaps = 37/647 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   I  +   + I  ++G YV   R             CPFHDEK+PSFH   + G +
Sbjct: 21  IPDRDIAAIRERVRIDEVVGDYVQLRRAGA----DSLKGLCPFHDEKSPSFHVRPNHGHF 76

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
           +CF C   GD  +FL  +   SF+E+V+ LA   G  +    P    +     ++ LI  
Sbjct: 77  HCFGCGEGGDVYAFLQKIEHVSFVEAVELLADRIGHTITYSGPATSVQRDRGSRSRLIAA 136

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A +F+  +L++        YL ER  D+ A   F  G+AP    +L +HL++KGF  
Sbjct: 137 NAAAAEFYAAALESDEAAPARQYLTERNFDAEAARHFGCGFAPSGWDTLTKHLQRKGFEF 196

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238
           +++  AGL           DRF  RL++PIRSS G+VI FG R L   + +  KY+N+PE
Sbjct: 197 KELEAAGLSRQ--GRRGPMDRFHRRLLWPIRSSAGEVIGFGARRLFDDDPMEAKYINTPE 254

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T+L+ K   ++    A   + K              ++VEGY DV+++  AGV   V+S 
Sbjct: 255 TLLYKKSNVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVASC 304

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDG----DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           GTA  +  L +L +L               D        A+           +    +  
Sbjct: 305 GTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDAAGRAAALKAFGGEQNLAGQSFVAVAP 364

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G DP       G  A   L+    PL +   +        ++ + R          +  
Sbjct: 365 DGMDPCDLRLRSGDAALRDLVARRTPLFEFAIRSALAELDLDSAEGRVAALRRCVPMVAQ 424

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS----- 469
           IKD  LR  Y++ +   +       + +           A      G   R  +      
Sbjct: 425 IKDPTLRDEYARQLAGWVGWSDVAQVIDRVRSQSKHSAGAGRGGSGGRVSRRAEQSAAPA 484

Query: 470 --SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             +  +          +   L + + +PA+    +  L    + +     + + + +   
Sbjct: 485 GPAASRPDPRDPTLWPQREALKSALQYPALAGPVFDSLTVESFTHPGYAAVRAAIEAAGG 544

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                   +  + + +R    L   L  ++    +     +         Y   +    +
Sbjct: 545 TSSGVTGGQWIEAVRDRASSPLTAGLISELGVEAIQVDDEKLP------RYIAGVLARLQ 598

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              + RQ  E++ ++ +++   + ++   L   L  +      +  Q
Sbjct: 599 EVWMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 645


>gi|307824737|ref|ZP_07654960.1| DNA primase [Methylobacter tundripaludum SV96]
 gi|307734095|gb|EFO04949.1| DNA primase [Methylobacter tundripaludum SV96]
          Length = 592

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 165/613 (26%), Positives = 273/613 (44%), Gaps = 49/613 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR+FI +LL+ + I +LI  +V   +   N     + A CPFH EKTPSF  N  K F
Sbjct: 4   RIPREFIDELLVRVDIVDLIDSHVPLKKTGNN-----FVARCPFHAEKTPSFSVNRKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--DLIR 119
           ++CF C   G+ +SFL       F+E+++ LA   GV +P    + + K+K      L  
Sbjct: 59  FHCFGCGASGNAISFLMDFSHLDFVEAIEDLAGFVGVDVPRESTEYQPKQKKDDLNSLYA 118

Query: 120 LIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A  F+   L+ +   K+   YL  RG+       F LGYAPD   +L     QK  
Sbjct: 119 LMEQAAAFYAEQLRTSDEGKKAVEYLKNRGVSGDCAGDFMLGYAPDEWKALASRFDQK-- 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
               +++AGLL+    S   YDRFR R++FPIR  R ++I FGGR L      KYLNSPE
Sbjct: 177 ---LLLDAGLLVSK-ESGQPYDRFRGRIMFPIRDKRARIIGFGGRVL-DDSLPKYLNSPE 231

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LFHKGK +Y  +  L    K  R          I++VEGYMDV++L Q G+   V++L
Sbjct: 232 TSLFHKGKEVYGLYELLEKNPKPQR----------ILIVEGYMDVIALAQFGIHYAVAAL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA ++  L LL++ S  +V CFDGD  G  AA++A++     L  G ++  +LL +  D
Sbjct: 282 GTAASQAHLDLLFRFSSELVFCFDGDKAGREAAWRAMESAFSSLKDGRQIRIMLLPQNHD 341

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  G   F   +  +  L +  +   +   + +  + RA+L    K  +  + + 
Sbjct: 342 PDSLVREEGLDGFIGRMQTAETLSEYFFGHFSNELNLSEMEGRAQLVNKAKPYLEKLPES 401

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +      +++         +   +            +  +   Q   + S        
Sbjct: 402 IFKEMMFARLKELSGWANLDVLENATTLVAKQGSKQDRKIARNRPQDGGRLSSA------ 455

Query: 479 KPSLREAALLLTLINHPAILQEQYQ---ELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                    +  L+ +P + +   Q   + + + +       L+  +     ++      
Sbjct: 456 ------RVAIALLVQNPRLAELIEQREIDWSGLEFSG---AALFKNILQMIADKNPANAA 506

Query: 536 EIHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANIV---DVRQGYQQALALYKRFR 589
            + +   +       + L  LD QV D  + +   ++        R+     L    +  
Sbjct: 507 VLMECYRDTAEEKPIKALALLDSQVADDKIEAVFCDSLDRLLTQARETALTGLLNKGKTE 566

Query: 590 LLSRQKEEIEKQI 602
            L  Q++E+ +++
Sbjct: 567 GLDAQEKELLRKM 579


>gi|189499600|ref|YP_001959070.1| DNA primase [Chlorobium phaeobacteroides BS1]
 gi|189495041|gb|ACE03589.1| DNA primase [Chlorobium phaeobacteroides BS1]
          Length = 630

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 159/650 (24%), Positives = 272/650 (41%), Gaps = 40/650 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I ++     I ++I  YV       N     Y A  PF  EKTPSF  +  K  Y
Sbjct: 2   IPNNKIDEIRESCDIVDVISDYVKLQPSGRN-----YKALSPFTSEKTPSFVVSPDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CFS    G+  +F+  +   SF ESV+ +A   GV +          +K +      + 
Sbjct: 57  KCFSSGKGGNVFTFIMEMEKLSFPESVELVAKRCGVDISKYLKNQGSIDKTERSEHEPLT 116

Query: 123 VATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A   ++  L +A  ++   Y + +RG+    I  F LGYAP++   L +H      + E
Sbjct: 117 WAARLYNRLLNSAGGQKGLEYLVKKRGLSQKTITSFGLGYAPEAWDYLLKHTGSSAIALE 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETI 240
           + ++ GL+   +   + YD FR+R++FPI S  GQV+ FGGRTLS  +   KY+NSPE+ 
Sbjct: 177 RFVKTGLIYHNEKKNSHYDYFRHRVMFPIFSVGGQVVGFGGRTLSDDKQTPKYINSPESA 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K + LY    A + ++K            F ILVEGYMDVL+L QAG+ N V+S GT
Sbjct: 237 VFNKSRLLYGLHAAKDMIRKQ----------GFAILVEGYMDVLALHQAGMINTVASCGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q ++L + +  I+  +DGD  G+++    ID+    +  G       L  GEDPD
Sbjct: 287 SLTREQAKILRRYTEEILFIYDGDQAGMKSMLSGIDV---LVAEGLTPWVATLPAGEDPD 343

Query: 361 SFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           S +   G+  F K I  S    +D       ++ SF+ P++++     +   +  + D  
Sbjct: 344 SLVTSKGREGFLKFIDSSRKSFIDFQITFHQKDGSFDQPEKKSRAIREILKTVTMVTDTA 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y Q +  ++           S        + R            +         + 
Sbjct: 404 RKELYLQDLEQKIGISVAVLKRIISEIKTSKHSSKRSTRDDTGKSPAQKK--------EA 455

Query: 480 PSLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKY---- 531
            S+ E   + +L+       E  +  A     ++  N     +   L   + E K     
Sbjct: 456 LSVLEKTFIKSLLESTWYGNEVLEFSASHETLLKLSNPVAAHILQHLIKRYRENKETPGS 515

Query: 532 -FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                     +      +L   L  +   +  W A+ +      R+     L    R  +
Sbjct: 516 FLDITNEIGSMSSPEARDLASGLLIEQPVSERWQASFDEQQQKARRCLTAFLDS-VRSLI 574

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI-QIHQIESQEAMIE 639
           L+  +E  +  I Q+    + ++   L   L ++   +++  +    MI+
Sbjct: 575 LNDFRETRKHIIDQLRTVTDLDREKALTEKLQQLRKEEMNTAKEVNDMIK 624


>gi|157149981|ref|YP_001450556.1| DNA primase [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074775|gb|ABV09458.1| DNA primase [Streptococcus gordonii str. Challis substr. CH1]
          Length = 593

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 142/635 (22%), Positives = 258/635 (40%), Gaps = 51/635 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I D+   + I  +IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 2   IDKEIISDIKNSVNIVEVIGEVVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+E+VQ +A  +G+ L     +    K++     L  +
Sbjct: 57  HCFGCGKSGDVFKFIEEYRGVSFMEAVQIIAERSGIQLAVDKNELSQPKRQHPYQALYDI 116

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      ++   YL +RG+    I+ F++G AP     L + + +K   
Sbjct: 117 HTEAAKFYHAILMTTKMGEKARAYLYKRGLTDEIIKHFQIGLAPSEGNYLYQSMVEKFDE 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-----KGESVKYL 234
              +           S   YD F+NR++FP+ +  GQV+AF GR             KY 
Sbjct: 177 ATIMNSGLFN--LAESNLVYDAFQNRIMFPLANDNGQVVAFSGRIWEESPPTDSHQAKYK 234

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AG++N 
Sbjct: 235 NSRSTAIFNKSYELYHLDKAKATIKK----------SHEVYLMEGFMDVIAAYRAGIENA 284

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   ++ L K   +++L +DGD  G  A  KA+D +         V  V + 
Sbjct: 285 VASMGTALTHEHVQHLSKYCKKVILSYDGDKAGQAATVKALDEL-----KDLSVEIVSIP 339

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD F++       + L+ ++         R  +  +      + E    +   I  
Sbjct: 340 DQMDPDEFVQKNSPEELQYLLTKTRISDVEFLIRYLKPENTENLQAQIEFVEKMAPIIAQ 399

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                 +  Y   + + L     + + +     R   + ++        Q   Q++L   
Sbjct: 400 ATSITAQNSYIYMLAELLPDFDYQQVEQAVNNSRLSNRKSQQEQVY--QQPRFQTNLPLS 457

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K   +    E  LL  ++ +P +L +  +   D ++   ELQ L+  L            
Sbjct: 458 KQVSRLVKAENHLLNRMVEYPIVLNDY-RLREDFQFATPELQILYQILCE---------- 506

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
              +  +      E    + +           +E    ++ +     +   +   LL ++
Sbjct: 507 ---NGEVTSHDLSEQSDGVQQAWYRILEEDLPSEIADNELAE-----VESIRDKELLRKE 558

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            + I K++ + +  G+ +     +  L     ++ 
Sbjct: 559 NQIIGKRVREASHNGDVDMAIEELERLIAQKRRME 593


>gi|56750270|ref|YP_170971.1| DNA primase [Synechococcus elongatus PCC 6301]
 gi|56685229|dbj|BAD78451.1| DNA primase [Synechococcus elongatus PCC 6301]
          Length = 694

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 179/666 (26%), Positives = 290/666 (43%), Gaps = 54/666 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I +++ + V   +R       D+   CPFHD+K+PSF  + +K F
Sbjct: 5   RLHPETIAAVKERADIVDIVSEQVVLKKRGK-----DFVGLCPFHDDKSPSFTVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           YYCFSC   G+ + FL  L   SF E V  LA    VP+         +++++   +  L
Sbjct: 60  YYCFSCGAGGNPIKFLMELGKQSFSEVVLDLAKRYQVPVRTLEVQQHQELQRQLSRRERL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175
             ++ VAT F+  SL+         YL   R +    I+ F+LGYAP    SL  H + Q
Sbjct: 120 YEVLAVATQFYEQSLRRPEGAAALDYLRRSRQLQESTIQKFQLGYAPAQWASLATHLIEQ 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K F  + + EAGL++   N    YDRFR+RL+ PI   +G+V+ FGGRTL  GE  KYLN
Sbjct: 180 KRFPADLVEEAGLVVARRNGQGYYDRFRDRLMIPIHDLQGRVVGFGGRTL-TGEEPKYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LF KGK L+    A   + K              ++VEGY DV++L  AG+ + V
Sbjct: 239 SPETTLFEKGKLLFGLDKARAAIAKQ----------DQAVVVEGYFDVIALHAAGIDHAV 288

Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVL 352
           +SLGTAL+  Q++LL +   S +IVL FD D  G +AA +AI  V      G  ++  + 
Sbjct: 289 ASLGTALSRQQVKLLSRYSESNQIVLNFDADRAGAKAAERAIGEVEDLAYQGQVQLRVLN 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+D D +++ +    + +L+  S   +D    +   +R+ +  D+   +   +   +
Sbjct: 349 LPGGKDADEYLQRHSVADYRELLARSPLWLDWQIDQLLRDRNLDQADQFQAVVQAIVQLL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             + +  LR +Y   + +RL Q   +   + +   R   +  R   Q         S   
Sbjct: 409 GKLPNTPLRTHYVHQVAERLSQGEARTAVQLASDLRAQVRGQRWHGQ--------ASRWE 460

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFLFS----- 524
           K          EA +L   ++ P +     + L D     +     + LW  +       
Sbjct: 461 KPGDDSIREQAEAQILKVYLHCPRLRLAVRKTLHDREIQGFSLQPHRLLWQAIAEIEEAH 520

Query: 525 ------DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQG 577
                   VE+     +++          + L QL        L  +  + A++      
Sbjct: 521 LGFAAMYQVERGEGNGDDLAAIDLVPILRDRLDQLTGVSLGGFLELSENDHADLTHPLPL 580

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIHQIE-- 632
            + A+AL +R R   R +  ++    Q     E    +     I    +   QI  +   
Sbjct: 581 LRGAVALVERLRCEKRCRHLLDSWARQSIHTFEHCIEQLLQAGIGEDVDAEAQITALHEQ 640

Query: 633 -SQEAM 637
            +QEA+
Sbjct: 641 LNQEAL 646


>gi|299144150|ref|ZP_07037230.1| DNA primase [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518635|gb|EFI42374.1| DNA primase [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 601

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 169/628 (26%), Positives = 290/628 (46%), Gaps = 35/628 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + + D+   I I NLI QYV   +  +N     Y   CPFH EKTPSF  + SKG +
Sbjct: 5   IDDELLNDIRDKIDIVNLISQYVHLKKSGSN-----YMGLCPFHGEKTPSFSVSPSKGIF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRLI 121
           +CF C V GD +SF+       F E+V+ LA   G+ L         +    +       
Sbjct: 60  HCFGCGVGGDQISFIMKRENLGFREAVKFLADKYGIELKNTSESINTQLINKKNRAYEAN 119

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             A  FF   L  +R K  + YL  R ID+  I  + LGYAPDS   L  +L +KGF+ +
Sbjct: 120 REAAKFF--MLSLSRSKSAYMYLKNRNIDNDTIRDYGLGYAPDSWNELFNYLSKKGFNGD 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           ++ E  L+    +     DRFRNR++FPI  ++ +VI FGGR L      KYLN+ +TI+
Sbjct: 178 ELEEFNLVSKSKSG-KFIDRFRNRIMFPIIDTKKRVIGFGGRVL-DDSLPKYLNTRDTII 235

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+KGK+LYN                 ++    IILVEGYMDV+SL ++G+   V+SLGT+
Sbjct: 236 FNKGKHLYNLN-----------IISEKSDREKIILVEGYMDVISLYKSGINYSVASLGTS 284

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE Q  L+ +    + +C+DGD  G++A  +AID+    +I   +   + L    DPD 
Sbjct: 285 LTEEQAELIKRYGKEVYICYDGDSAGIKATNRAIDI---LIIQNIKPKILTLPEKLDPDE 341

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           ++  YGK +FE  +  S P ++    +  EN +  +PD  +     +   I+ IK+    
Sbjct: 342 YVTKYGKLSFEIELKNSQPYLEYKISKIRENYNIESPDGLSGFTSEVSKLISRIKNPIEM 401

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y   I  +        I       R  K    ++       + ++    K        
Sbjct: 402 DIYVDKISKQYGVSKNSIINYILILNRNKKNKEFNKKTYEYKNKEVKD---KKISINTRY 458

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           + E  L+   +      +   +++    +  +E + ++  L   + +      +++ + L
Sbjct: 459 IAEDQLIKYALYSNDNFELIDKKINSCEFTKSECRIIFEELAEYYRQG--IDFKDVLKNL 516

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            ++    + +    ++    +   +++  I ++    ++    Y+R  +L +  + +EK 
Sbjct: 517 VDKKL--ISQDYADKINIIEINQYSSDKIISELIGTLKKDSLEYRRKDIL-QDIKNLEK- 572

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIH 629
             +  +K  +E   +LI  L+E++  I+
Sbjct: 573 --EEPSKKNSEILKLLIDELNEINKTIN 598


>gi|126659311|ref|ZP_01730447.1| DNA primase [Cyanothece sp. CCY0110]
 gi|126619393|gb|EAZ90126.1| DNA primase [Cyanothece sp. CCY0110]
          Length = 644

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 156/649 (24%), Positives = 291/649 (44%), Gaps = 34/649 (5%)

Query: 1   MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           MN+P    D ++++   I I  ++  YV   +R  N     Y   CPFH EKTPSF  N 
Sbjct: 1   MNFPRLHPDTLEEVKEKIDIYEVVSDYVVLKKRGQN-----YVGLCPFHQEKTPSFTVNQ 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKI 113
           SK  YYCF C   G+ + FL  +   SF + V  LA    VPL    P    +IEK+  +
Sbjct: 56  SKQLYYCFGCGEGGNGIKFLMEIGQQSFSQVVLELANRYQVPLKTLEPEKRQEIEKELSL 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH 172
           +  L  ++ + ++F+ H+L+ A  + +  Y   +R      I+ F LGYAP    +L  +
Sbjct: 116 RDQLYEIVALTSNFYEHALQEAVGENVLNYLTQKRQFKHQTIQQFNLGYAPGGWETLYRY 175

Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
            + QK +    + +AGL+         YD FR+RL+ PI+  +G+VIAFGGR+L   E  
Sbjct: 176 LVEQKRYPIALVEQAGLIKPRKKGNGYYDTFRDRLMIPIKDIQGRVIAFGGRSL-TDEEP 234

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSP+T LF+KGK L+    A N ++          S   +I+VEGY D ++L +AG+
Sbjct: 235 KYLNSPDTPLFNKGKTLFALDIAKNSIR----------SLDQVIVVEGYFDAIALHEAGI 284

Query: 292 QNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348
            N V+SLGTA +E QL+ L + +   +++  FD D+ G++A  +AI ++          +
Sbjct: 285 TNTVASLGTAFSESQLKQLLRYTDSKQVIFNFDADNAGIKATERAITEIESLIYSGQVNL 344

Query: 349 NFVLLSRGEDPDSFIRCYG--KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
             + +  G+D D FI+ +      +++LI ++   ++   K+   +++    D   ++  
Sbjct: 345 KILNIPDGKDADEFIKSHENGFEKYQELIDKAPLWLNWEIKQLLIDKNLKQADHFEQVAQ 404

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            +   +N + D   R YY     + L Q   + +  +    +        +       + 
Sbjct: 405 GMVKLLNKLSDSNQRSYYISYCAELLAQGDARILPLYIKNLQTQLNKPLKQSANKKIDKT 464

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFS 524
                +  + +      E  LL   I++P   QE + +L +  + +  ++ + +W  L  
Sbjct: 465 FIKPTISTE-NNLLKEAETILLKIYIHYPECRQEIFDKLEENNLCFSLSDHRIIWHNLLE 523

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQ-LDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
              +      +   Q + +     +    +  ++ +   +    +    +       A  
Sbjct: 524 IEKDTLNKDNDNNEQFISKLEIKIIESSQVINKINELLNFREIEQYEDRNRLNLIIDAAL 583

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +      L +     E++  ++  + +       ++       +I +++
Sbjct: 584 ISLEKANLEKYCRYCEQKYKKINPQEDPVNYQYYLNEYISSRQKILKLQ 632


>gi|81300101|ref|YP_400309.1| DNA primase [Synechococcus elongatus PCC 7942]
 gi|93141299|sp|P74893|PRIM_SYNE7 RecName: Full=DNA primase
 gi|81168982|gb|ABB57322.1| DNA primase [Synechococcus elongatus PCC 7942]
          Length = 694

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 179/666 (26%), Positives = 290/666 (43%), Gaps = 54/666 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I +++ + V   +R       D+   CPFHD+K+PSF  + +K F
Sbjct: 5   RLHPETIAAVKERADIVDIVSEQVVLKKRGK-----DFVGLCPFHDDKSPSFTVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           YYCFSC   G+ + FL  L   SF E V  LA    VP+         +++++   +  L
Sbjct: 60  YYCFSCGAGGNPIKFLMELGKQSFSEVVLDLAKRYQVPVRTLEVQQHQELQRQLSRRERL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175
             ++ VAT F+  SL+         YL   R +    I+ F+LGYAP    SL  H + Q
Sbjct: 120 YEVLAVATQFYEQSLRRPEGAAALDYLRRSRQLQESTIQKFQLGYAPAQWASLATHLIEQ 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K F  + + EAGL++   N    YDRFR+RL+ PI   +G+V+ FGGRTL  GE  KYLN
Sbjct: 180 KRFPADLVEEAGLVVARRNGQGYYDRFRDRLMIPIHDLQGRVVGFGGRTL-TGEEPKYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LF KGK L+    A   + K              ++VEGY DV++L  AG+ + V
Sbjct: 239 SPETTLFEKGKLLFGLDKARAAIAKQ----------DQAVVVEGYFDVIALHAAGIDHAV 288

Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVL 352
           +SLGTAL+  Q++LL +   S +IVL FD D  G +AA +AI  V      G  ++  + 
Sbjct: 289 ASLGTALSRQQVKLLSRYSESNQIVLNFDADRAGAKAAERAIGEVEDLAYQGQVQLRVLN 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+D D +++ +    + +L+  S   +D    +   +R+ +  D+   +   +   +
Sbjct: 349 LPGGKDADEYLQRHSVADYRELLARSPLWLDWQIDQLLRDRNLDQADQFQAVVQAIVQLL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             + +  LR +Y   + +RL Q   +   + +   R   +  R   Q         S   
Sbjct: 409 GKLPNTPLRTHYVHQVAERLSQGEARTAVQLASDLRAQVRGQRWHGQ--------ASRWE 460

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFLFS----- 524
           K          EA +L   ++ P +     + L D     +     + LW  +       
Sbjct: 461 KPGDVSIREQAEAQILKVYLHCPRLRLAVRKTLHDREIQGFSLQPHRLLWQAIAEIEEAH 520

Query: 525 ------DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQG 577
                   VE+     +++          + L QL        L  +  + A++      
Sbjct: 521 LGFAAMYQVERGEGNGDDLAAIDLVPILRDRLDQLTGVSLGGFLELSENDHADLTHPLPL 580

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIHQIE-- 632
            + A+AL +R R   R +  ++    Q     E    +     I    +   QI  +   
Sbjct: 581 LRGAVALVERLRCEKRCRHLLDSWARQSIHTFEHCIEQLLQAGIGEDVDAEAQITALHEQ 640

Query: 633 -SQEAM 637
            +QEA+
Sbjct: 641 LNQEAL 646


>gi|149277167|ref|ZP_01883309.1| DNA primase [Pedobacter sp. BAL39]
 gi|149232044|gb|EDM37421.1| DNA primase [Pedobacter sp. BAL39]
          Length = 668

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 155/682 (22%), Positives = 281/682 (41%), Gaps = 69/682 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I  ++  + I  ++G++V   +R +          CPFH+EKTPSF+ + +KG Y
Sbjct: 2   INHETINKIMETVRIDEVVGEFVSLKKRGS-----SLIGNCPFHNEKTPSFNVSVAKGIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRL 120
            CF C   GD + F+      S+ E+++ LA    + +      P+  + +  +  L  +
Sbjct: 57  KCFGCGKGGDSVHFIMDHEKYSYPEALKFLARKYNIEVEETVQSPQNLEAQNARESLYIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A ++F + L      R     Y  ERG     +  F+LGY+PD   +L    +  G 
Sbjct: 117 SEYAANYFANELWTGDQGRAIGLSYFKERGFREDIVNKFQLGYSPDIWDALILSAKGAGH 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
            EE + + GL I  D     YDRFR R++FPI +  G+VI FGGRTL   ++  KY+NSP
Sbjct: 177 KEEYLEKTGLAIRNDKG-KLYDRFRGRVMFPIHNFTGRVIGFGGRTLKTDKNVPKYVNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK   LY  F A   ++           +    LVEGY DVL++ QAG++NVV+S
Sbjct: 236 ESDIYHKSNVLYGLFHAKKAIR----------DTDNCYLVEGYADVLAVHQAGIENVVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GT+LT  Q+RL+ + S  + + +DGD  G++A+ + +D+    L  G  V  VL   G 
Sbjct: 286 SGTSLTTEQIRLIGRFSQNVTILYDGDAAGIKASLRGLDM---ILEEGLNVKVVLFPDGH 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS++   G   F+  I ++     +         +   P +RA +   +   I  I D
Sbjct: 343 DPDSYMHHVGAGEFKAYIEQNRKDFILYKASILLKEAGTDPIKRAGIIRDIVESIAKIPD 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEH------------------------SGYGRYWKKN 453
                 + +     LQ   +  I+E                              + ++N
Sbjct: 403 DIKASVFIRECSGLLQVEERILISELNKIRMAKFKKAGNAGPSGQQSGGHQQPSSFQQQN 462

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPS------LREAALLLTLIN--HPAILQEQYQ-- 503
           +      GP   L + +     +++ P       ++E  ++  L+   H  +  ++    
Sbjct: 463 SYQPYPDGPPDNLFEHADASVPVTEIPDQVETDLIQEQEIVRLLLAFGHQQVTWDKIDNM 522

Query: 504 --------ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
                    LAD+ +++   + +     ++  E    +  +       +     +     
Sbjct: 523 YIGSFIMQNLADVSFEDPVCKSIIDTYRNEIEEGHLPVASQFINNQDRKISELAINLSTS 582

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
               +  W    +  + D     +  +     + +   ++R   ++ K+I         E
Sbjct: 583 PYSLSENWYNKHKIYVRDESVNLKGTILGGLFHLKKGKVARMLTDLSKEIKSEEDPTNLE 642

Query: 613 KTAILISILHEVHIQIHQIESQ 634
                   +  V  +I +    
Sbjct: 643 ILMQRFIFIKGVEREISKYLGT 664


>gi|254455489|ref|ZP_05068918.1| DNA primase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082491|gb|EDZ59917.1| DNA primase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 591

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 163/631 (25%), Positives = 288/631 (45%), Gaps = 44/631 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP++++ ++   + +S ++ + V   +R       +Y    PF +EKTPSF  ND K 
Sbjct: 1   MKYPKEYLDEIKTRLKVSTVVSKSVALKKRGK-----EYVGLSPFKNEKTPSFTVNDEKE 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF+    G+   F+  +    F E+V+ LA +AG+   +   + E++EK   + + +
Sbjct: 56  FYHCFATSEHGNIFDFVMKIQNLKFGEAVKHLAQLAGMQPYMFSKQDEEREKKWKEYLSI 115

Query: 121 IEVATDFFH-HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E   +F+H   LKN        YL  R +    ++ FK+GY    +        +  FS
Sbjct: 116 YEQYVNFYHNELLKNETYSNARDYLKNRFLGKDEVKKFKIGYI--EKNPTFFEKLKNEFS 173

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238
           E+ ++E+GL    +   T  +RFR RLIFPI +  GQ +A GGR +       KY+NSPE
Sbjct: 174 EQTLVESGLFYLDEKKKTYVERFRGRLIFPINNISGQPVALGGRIIENLEYLAKYINSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T  F KG NLYN   A  +  K             I LVEGYMDV+ L + G++NVV++L
Sbjct: 234 TNFFKKGSNLYNLDLARKFSNKL----------DHIYLVEGYMDVVGLSKNGIENVVANL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT+ Q+  L +    I++CFDGD+ G +AA +A +  +  L P  +++F+ L   ED
Sbjct: 284 GTSLTDKQILTLNQFFDDIIICFDGDESGYKAAVRAAENSIKELKPEKQISFLFLPDKED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS++   GK  F +   +S   +        + ++ N P   A  E  L+   N IKD 
Sbjct: 344 PDSYVNKNGKNYFIEFTNQSKLSIHQFIFSHYKKQTDNNPSSMAIFEKKLRGIANTIKDD 403

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            ++ Y  +   +++ +L        + Y            +K  S    +      K   
Sbjct: 404 FIKKYVLEYFLEKIAELTPHSNQNKNKYY----------VKKTKSLDTTKKHFNDSKSIT 453

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              L+E +LL  L+N+ + LQ     + DI++     +++   +       +    ++++
Sbjct: 454 SVELKEFSLLYLLLNNLSFLQANIHLIEDIKFFTEINRQILDTIIQKLKSGEQITIDDLN 513

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                    +LL ++++      +       N   V +           +        ++
Sbjct: 514 LD------KQLLDKINKFAPIKHILKNKPN-NENQVIELLDDISKDLFNY--------DL 558

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           E +I ++ +K   + +    + L E+  +  
Sbjct: 559 EFRIQELESKFSKDMSETTFNELKELKNERK 589


>gi|229916321|ref|YP_002884967.1| DNA primase [Exiguobacterium sp. AT1b]
 gi|229467750|gb|ACQ69522.1| DNA primase [Exiguobacterium sp. AT1b]
          Length = 603

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 160/632 (25%), Positives = 264/632 (41%), Gaps = 37/632 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I ++     I  LIG+ V+  ++            CPFH E +PSF  +  KG 
Sbjct: 3   RIPDEVIAEVKQATDIVELIGERVELKKQG-----HRLVGLCPFHSENSPSFSVSPEKGM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIR 119
           Y+CF C   G+  +F+    G SF E+V+RLA  A + +     D ++ +++  +  +  
Sbjct: 58  YHCFGCGAGGNVFTFVMETEGLSFPETVERLATRANISVDGIQGDEELTREQVWRKQMRD 117

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              +  D +H  L K    +    YL  R +    I  +K+G+APD R    E L ++GF
Sbjct: 118 AHRLVADLYHEVLMKTEAGEVGLTYLRNRDLAEETIAQYKIGFAPDQRRFTVELLERRGF 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             E ++EAGL I    S   +DRF  R++FPI    G ++ F GR +      KY+N+ E
Sbjct: 178 DLEVMVEAGL-ISKSKSGEYFDRFEGRVVFPIADRDGTIVGFSGRAI-DDRQPKYVNTAE 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF+K + L+ F  A   ++K  R          + LVEG +DVL + QAG Q VV+SL
Sbjct: 236 TPLFNKSELLFGFSQARATMRKKKR----------VFLVEGNVDVLQVAQAGTQEVVASL 285

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +    R L ++   +++C+DGD  G  A  K I L          V  + L    D
Sbjct: 286 GTAFSPQHARALSRIVEEVIICYDGDHAGQEATQKVIRL---LEASPLDVQVLPLPEKTD 342

Query: 359 PDSFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD +IR +G T +++ I      ++D + +     ++ N   ER      +   I    D
Sbjct: 343 PDDYIRQHGATHWQQFIESEQLSVLDFMNRMYRRGKNLNREGERIRFIESMLEEIGKTND 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R  Y + + D  +   +   +             R  +   P ++    +       
Sbjct: 403 SIRRDLYVKKLSDEFEIPLETLRSRIPRPTSSESTPTRAMEPVEPVRKRSSKA-----GE 457

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP-EE 536
            +    E  LL  ++  P  ++     L  +RY +   + L S L+    E       ++
Sbjct: 458 PRWMKAEKYLLRAMLTGPEQVRFVRDRLG-LRYQDETHRMLGSALYEIVSETMTQDEFDQ 516

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I     ER   +      R      +  A  +    DV   Y + +  Y+  R + R K 
Sbjct: 517 ITLPFMERYCDQRPDYAMRFAEIRLM--AGPDELSEDVLDEYIRVINSYEEQRQIERAKR 574

Query: 597 EIEKQIAQVTAKGEAE-KTAILISILHEVHIQ 627
           EI        +  +   K   LI+    +  +
Sbjct: 575 EIA---QDAESIVDQASKLQELIARSRRLRER 603


>gi|254774769|ref|ZP_05216285.1| DNA primase [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 650

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 136/647 (21%), Positives = 242/647 (37%), Gaps = 37/647 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   I  +   + I  ++G YV   R             CPFHDEK+PSFH   + G +
Sbjct: 21  IPDRDIAAIRERVRIDEVVGDYVQLRRAGA----DSLKGLCPFHDEKSPSFHVRPNHGHF 76

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
           +CF C   GD  +FL  +   SF+E+V+ LA   G  +    P    +     ++ LI  
Sbjct: 77  HCFGCGEGGDVYAFLQKIEHVSFVEAVELLADRIGHTITYSGPATSVQRDRGSRSRLIAA 136

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A +F+  +L++        YL ER  D+ A   F  G+AP    +L +HL++KGF  
Sbjct: 137 NAAAAEFYAAALESDEAAPARQYLTERNFDAEAARRFGCGFAPSGWDTLTKHLQRKGFEF 196

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238
           +++  AGL           DRF  RL++PIRSS G+VI FG R L   + +  KY+N+PE
Sbjct: 197 KELEAAGLSRQ--GRRGPMDRFHRRLLWPIRSSAGEVIGFGARRLFDDDPMEAKYINTPE 254

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T+L+ K   ++    A   + K              ++VEGY DV+++  AGV   V+S 
Sbjct: 255 TLLYKKSNVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVASC 304

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDG----DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           GTA  +  L +L +L               D        A+           +    +  
Sbjct: 305 GTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDAAGRAAALKAFGGEQNLAGQSFVAVAP 364

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G DP       G  A   L+    PL +   +        ++ + R          +  
Sbjct: 365 DGMDPCDLRLRSGDAALRDLVARRTPLFEFAIRSALAELDLDSAEGRVAALRRCVPMVAQ 424

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS----- 469
           IKD  LR  Y++ +   +       + +           A      G   R  +      
Sbjct: 425 IKDPTLRDEYARQLAGWVGWSDVAQVIDRVRSQSKHSAGAGRGGSGGRVSRRAEQSAAPA 484

Query: 470 --SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             +  +          +   L + + +PA+    +  L    + +     + + + +   
Sbjct: 485 GPAASRPDPRDPTLWPQREALKSALQYPALAGPVFDSLTVESFTHPGYAAVRAAIEAAGG 544

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                   +  + + +R    L   L  ++    +     +         Y   +    +
Sbjct: 545 TSSGVTGGQWIEAVRDRASSPLTAGLISELGVEAIQVDDEKLP------RYIAGVLARLQ 598

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              + RQ  E++ ++ +++   + ++   L   L  +      +  Q
Sbjct: 599 EVWMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 645


>gi|262276865|ref|ZP_06054658.1| DNA primase [alpha proteobacterium HIMB114]
 gi|262223968|gb|EEY74427.1| DNA primase [alpha proteobacterium HIMB114]
          Length = 581

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 168/617 (27%), Positives = 302/617 (48%), Gaps = 39/617 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP+ +I ++   + +S+++   V+  +R       ++    PF +EKTPSF  ND KG
Sbjct: 1   MKYPKTYIDEIRNRLKVSDVVRLKVNLKKRGK-----EFIGLSPFKNEKTPSFTVNDEKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CFS    G+   F+  L   +F E+V+ LA  AG+       + EK EK    + +L
Sbjct: 56  FYHCFSTAEHGNIFDFIMKLENLNFGEAVKMLAQRAGMQPYRFTKEDEKIEKENLRIQKL 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E+  +     L +        YL +RG+    I  FKLG+  +S+  ++  L + GF+ 
Sbjct: 116 FEIYFNQCKEDLFSQYKDTHLKYLIDRGLKIETINYFKLGFCENSK-KIQNKLFENGFTS 174

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++I++G+    D +    +RF+NR+ FPI++     I  GGRT+      KY+NSPET 
Sbjct: 175 DELIKSGMYYKKDGTDELVNRFKNRITFPIQNYYNNFIGCGGRTVLANALAKYINSPETN 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
            F KG NL+N   A               +S+ +ILVEGYMDV+SL   G++NV ++LGT
Sbjct: 235 FFKKGFNLFNLNNAKKE----------SLNSNNLILVEGYMDVVSLFNKGIKNVSATLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+T  Q+ L WK   +I++CFDGD  G+ A+Y+A + +L  L PG  + F  +   +DPD
Sbjct: 285 AMTTSQISLAWKNFDKIIICFDGDQSGIDASYRAAERILKILKPGKDIYFAKIPNSQDPD 344

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            F+  +GK  F  LI +S  LVD+++       + + P + A LE  L N  + I+DQ  
Sbjct: 345 DFVNQFGKEGFNSLISQSKDLVDVIFNHHALGVNKSKPSDIALLEKKLFNIADEIEDQIS 404

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           + Y   A ++++ +         +   +    +    + K  S RL         +  K 
Sbjct: 405 KKYIKSAFKNKIFE---------NIIKKKNYNSQSQEEIKKASLRL---------MLSKE 446

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            + E + +  ++N+P   + + ++++ + ++  E     S L +  V +     E++ ++
Sbjct: 447 EIVELSFINLILNYPEFSESKIEDISLLEFNFKESNIFISELINSLVNENIKTKEDLKKK 506

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L    F   +K+++    +  +     + + ++    Y   L + K+    ++Q   +E 
Sbjct: 507 LT-INFASFIKKIEMYSNNKSIIVNLNDESYLNFFNDYVDELNVAKK----NKQISSLES 561

Query: 601 QIAQVTAKGEAEKTAIL 617
           ++ +   +        L
Sbjct: 562 ELLKNPDEASYNHYLSL 578


>gi|261338091|ref|ZP_05965975.1| DNA primase [Bifidobacterium gallicum DSM 20093]
 gi|270276710|gb|EFA22564.1| DNA primase [Bifidobacterium gallicum DSM 20093]
          Length = 693

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 138/703 (19%), Positives = 251/703 (35%), Gaps = 93/703 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I+ +     + +++   V           G Y   CPFHDEKTPSF+     G +
Sbjct: 5   ISKADIEQVRARADLYDIVSSSVTLKPSG----MGSYVGLCPFHDEKTPSFNVRPVMGMW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   GD   ++       F E+V+ LA   G+ L         E +   +  L++ 
Sbjct: 61  HCFGCGRGGDVFGYVQEHENIDFREAVELLADKYGIELHYEAGSKHPETQGSTRARLLQA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A  FF   L           L  R       E F  GYAP    +L  HL  KGF++
Sbjct: 121 NEEAQRFFTSQLVTEEALPARKMLGGRNFSQADCERFGCGYAPRGWDNLVRHLAGKGFTQ 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK--YLNSPE 238
           +++++AGL   G      YD FR R+ +PIR S G+ + FG R L   ++++  Y+N+P+
Sbjct: 181 QEMLDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYDDDTIQAKYINTPD 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A   + K             +++VEGY DV+++  AGV   V++ 
Sbjct: 239 TQLYRKTQVLYGIDLAKPSIVKK----------RQVVVVEGYTDVMAMHLAGVDTAVATC 288

Query: 299 GTALTEYQLRLLWKLSP----------------------RIVLCFDGDDPGLRAAYKAID 336
           GTA      +++ +L                        RIV  FDGD  G +AA  A  
Sbjct: 289 GTAFGAEHAKIVRRLIRDDSMGAVNLVGPMRVDGEQLSSRIVFTFDGDAAGQKAAIHAFG 348

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
           L    L   ++    +     DP      +G  A   L+  + PL D +          +
Sbjct: 349 LDARFL---SQTFVAVAQDNLDPCDLRIEHGDEALRSLVAHAEPLYDFVINTAISRFDTS 405

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
               +      +   I  I+D+ +   Y++    R+     +         R        
Sbjct: 406 YTPGQVGAMHAVAPLIAQIRDKSMLDMYTRKAAGRIGVPVDQMRDLVKTERRRQHVRDVD 465

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPS---------------------------LREAALLL 489
                         +  G                                  + E   + 
Sbjct: 466 VYAPERKPFPDGGQMAAGMAQGPYQDMAAARRQQMHETAVNQRYYLVDDAVFMTEQQFMA 525

Query: 490 TLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           TL+  P  +  +Q+ EL    +  +  + ++  +          +P+ +      +  G 
Sbjct: 526 TLVQIPRAIDPQQFGELTINSFMTSVFRTMFQAVAVAGGLPDPSMPQGLWLHELSKAGGP 585

Query: 549 LLKQLDRQVRDAGLWSATTEANIV-----------------DVRQGYQQALALYKRFRLL 591
           +L  +  ++    L    +EA++                  +  + + + L         
Sbjct: 586 VLAGVINELAVQDLPLPASEADMAAADPNADRSAIQLRPATEAERAFARQLTARLLDLGY 645

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            RQ   ++ Q++ +    +      ++  + ++  +  Q++ Q
Sbjct: 646 MRQIGGLKLQMSHMVEGPDK---IAMLGAIADLERKRAQLKEQ 685


>gi|119512319|ref|ZP_01631405.1| DNA primase [Nodularia spumigena CCY9414]
 gi|119463032|gb|EAW43983.1| DNA primase [Nodularia spumigena CCY9414]
          Length = 633

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 161/648 (24%), Positives = 288/648 (44%), Gaps = 38/648 (5%)

Query: 1   MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           M  P    D I+++     I +++  +V   +R       D+   CPFHDEKTPSF  + 
Sbjct: 1   MQIPRLHPDTIEEIKQRADIVDVVSDHVVLRKRGK-----DFVGLCPFHDEKTPSFTVSQ 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKI 113
           +K  YYCF C   G+ + FL  L   SF E V  LA    VP+    P    +++++  +
Sbjct: 56  TKQMYYCFGCQAGGNAIKFLMDLGKHSFAEVVLDLARRYQVPVQTLAPEQRQELQRQISL 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH 172
           +  L  ++     F+ H+L+ ++ ++ + Y   ER +    I+ F LGYAP    +L  +
Sbjct: 116 REQLYEVLASTGQFYQHALRQSQGQKAYQYLQSERQLKEETIQQFGLGYAPAGWETLHRY 175

Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
            +  K +  + + +AGL+         YD FR+RL+ PIR  +G+VIAFGGRTL   E  
Sbjct: 176 LVEDKRYPVQLVEKAGLIKPRKEGGGYYDVFRDRLMIPIRDIQGRVIAFGGRTL-SEEQP 234

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF KGK L+    A + +          +     ++VEGY D ++L  AG+
Sbjct: 235 KYLNSPETELFSKGKTLFALDIAKDGI----------SQLDQAVVVEGYFDAIALHAAGI 284

Query: 292 QNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348
            N V+SLGTAL+  Q+RL+ + +   ++VL FD D  G  AA +AI ++         ++
Sbjct: 285 NNAVASLGTALSIEQVRLILRYTESKQLVLNFDADKAGNIAAERAIGEIATLAYKGEVQL 344

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
             + +  G+D D ++  +    +E+L+  +   ++   ++  +NR      +  ++   +
Sbjct: 345 KILNIPDGKDADEYLYTHTPFDYEQLLANAPLWLNWQIEQIIQNRDLKQATDFQQVSQQV 404

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              + +I +   R YY     + L     + I                   K  S +   
Sbjct: 405 VKLLKNIDNSDTRNYYVSYCAEILSLGDARLIPLRVENLLTQIAPTTATRNKPLSSKKKF 464

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDF 526
           +            L EA LL   ++ P   Q  +  L +  + +  +  + LW  +    
Sbjct: 465 TQSPIPGDKSLLELAEALLLRIYLHCPEQRQIIFNTLEERNLEFSLSHHRLLWQKILGST 524

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
            E+      +    L +R     L +    +      +  ++  I+   Q  Q A+A  +
Sbjct: 525 GEEV-----DFVSSLQDRYLE--LSEEIASISHLFHLNEKSQKEILRTPQAVQAAVACME 577

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R  L+ ++     +   +  ++ E EK        +   +++ +++ Q
Sbjct: 578 RV-LIEKRYRYFLELWEKTDSQAEPEKWQSYYQSFYHEKMRLQELDRQ 624


>gi|119773961|ref|YP_926701.1| DNA primase [Shewanella amazonensis SB2B]
 gi|119766461|gb|ABL99031.1| DNA primase [Shewanella amazonensis SB2B]
          Length = 576

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 177/628 (28%), Positives = 290/628 (46%), Gaps = 64/628 (10%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  PRDFI DL+    I  LI + V   +   N     Y ACCPFH EK+PSF  +  K 
Sbjct: 1   MAIPRDFINDLIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   G+ + F+      +F+++++ LA   G+ +P       ++++ +  DL +
Sbjct: 56  FYHCFGCGAHGNAIDFVMEYDRLNFVDAIEDLAGQLGLEVPREQGTGPRRDEGLARDLYQ 115

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L+E A   +   L+   DK+        RG+    +E F +G+APD    L    R    
Sbjct: 116 LMEEAARHYQTQLRQHADKQKVDEYLALRGLSKEVVEDFGIGFAPDGWDGLLGRYRTNPD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +++K++  G+LI+ D     YDRFR+RL+FPIR  RG+VI FGGR L    + KYLNSPE
Sbjct: 176 AQDKLLTGGMLIENDGG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +FHKG+ LY  +      +   R          +++VEGYMDV++L Q G+   V+SL
Sbjct: 234 TPIFHKGQELYGLYELKQKHRDPER----------VMIVEGYMDVVALAQFGIDYAVASL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+ T  Q +LL + +  ++ C+DGD  G  AA++A++  L  L PG++V F+ L +GED
Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDKAGYEAAWRAMETALPLLKPGDKVTFLFLPQGED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK AFE  I  +LPL D L+   ++        ++  L       I  IKD 
Sbjct: 344 PDSQVRKEGKEAFEMRIDNALPLADYLFDTLSQKY----GTDKGNLAKQAIALIEKIKDT 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L     + +  +L     + + +  G                 S      ++ K  L  
Sbjct: 400 VLANLLLENLAHKLGMNSSEDLRKKLGL---------------TSMSTGAKAMAKKGLKG 444

Query: 479 KPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           + +      +  L+ HP +  +      L+ IR    E          +   ++     +
Sbjct: 445 RGTPL-RLAISLLVQHPELGHKLPVQPALSHIRMTGIE----LLIQLLELTREQVLSTAQ 499

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + +   +      L +L +            +    +V Q +++AL              
Sbjct: 500 LLESYRDSEHWGPLTKLAQW---------EHQIAEDNVAQEFRKALVWLNNQY------- 543

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEV 624
            IE++  +++ K +  +   L   L ++
Sbjct: 544 -IEQRYQELSIKPDLTREEKL--QLQKL 568


>gi|326798100|ref|YP_004315919.1| DNA primase [Sphingobacterium sp. 21]
 gi|326548864|gb|ADZ77249.1| DNA primase [Sphingobacterium sp. 21]
          Length = 658

 Score =  338 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 168/667 (25%), Positives = 281/667 (42%), Gaps = 61/667 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I  +L    I  ++G +VD  +R T          CPFH+EKTPSFH + SKG Y
Sbjct: 2   IKQETIGKILDAARIEEVVGDFVDLKKRGT-----SLIGVCPFHNEKTPSFHVSVSKGIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CF C   GD + F+  L   S+ E+++ LA    + +  V   P+       +  L+ +
Sbjct: 57  KCFGCGAGGDSVRFVMELEKYSYPEALRYLAQKYNIEVEEVELSPEQAAASDKRESLLII 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A  FF  SL +  D +     Y  ERG     I+ F+LGY+P++  +L E   + GF
Sbjct: 117 TNWAAKFFRESLWDTEDGQAIGLSYFRERGYRDDIIKKFELGYSPEAWAALYEEAVKGGF 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           S E + E GL+I  D+    YDRFR R++FPI +  G+V+ FGGRTL   +   KY+NSP
Sbjct: 177 SVEFLDETGLIIRRDDG-KRYDRFRGRVMFPIHNLTGRVLGFGGRTLKTDKKTPKYVNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E++++HK   LY  + A   +                 LVEGY DV+S+ QAGV+NVV+S
Sbjct: 236 ESLIYHKSDVLYGLYFAKKAI----------TDQDNCFLVEGYADVISMHQAGVENVVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GT+LT  Q+RL+ + +  + + +DGD  G++A+ + +D+    L  G  V  +L   G+
Sbjct: 286 SGTSLTTGQIRLISRFTRNVTILYDGDAAGIKASLRGMDM---LLEEGMNVKVLLFPDGD 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF   +G   F++ I E+               + N P +RA +   + + I  I D
Sbjct: 343 DPDSFAMKHGAMQFKQYIAENSKDFIFYKTDILLKDAGNDPVKRAGVIHDVVDSIALIPD 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ------------------ 459
                 + +     L    +  I E +       K  +                      
Sbjct: 403 DIKASVFIRECSRLLDIEERLLIAELNKQKLQAIKKNQKSSDSSAAANAPFGGDEPPPDL 462

Query: 460 ---KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE----------LA 506
                          ++  LS+  +L+E  ++  LIN+  I  +  Q+          L 
Sbjct: 463 FMDPRDMAETRSQEELQPALSQSIALQEREIIRLLINYGQIPAKWEQDYPIAFVLFAGLQ 522

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           DI + +   QK+ +        ++                   +  L      +  W+  
Sbjct: 523 DIEFADPLCQKIITIYLEFIEREELPDERYFISHADREIADLAISLLSSPYSLSPNWNDE 582

Query: 567 TEA-----NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                      +++     AL    + R + +  +E+ + +     +   E        L
Sbjct: 583 KRKIYVSQETDNLKNAVLGALY-RIKKRKVEQNMQEVREALKIEHNEANLEILIDKYQKL 641

Query: 622 HEVHIQI 628
             +  ++
Sbjct: 642 KMMEKEL 648


>gi|260583937|ref|ZP_05851685.1| DNA primase [Granulicatella elegans ATCC 700633]
 gi|260158563|gb|EEW93631.1| DNA primase [Granulicatella elegans ATCC 700633]
          Length = 609

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 153/637 (24%), Positives = 290/637 (45%), Gaps = 42/637 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + +  +   + I +++ QYV   +R  N     Y+  CPFHDE+TPSF   + K  Y
Sbjct: 5   IPEETLNQIQSQVNIVDIVSQYVSLKKRGKN-----YFGHCPFHDERTPSFSVTEEKQIY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRLI 121
           +CFSC   G   SF+S + G SF+ESV ++A +A +P            +     ++   
Sbjct: 60  HCFSCGRGGTVFSFISEIEGLSFVESVAKVAELAQIPFENKYLSSRPSVQDTYQPIVAAH 119

Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           E A +F+ H  L+    ++   YL  RG     I+ FK+G A   R  +   ++Q   + 
Sbjct: 120 EKAAEFYQHVLLQTRGGEKALEYLQHRGYTLETIQTFKMGLALKDRTYVTNLIKQIPLTP 179

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV------KYL 234
           +++ E+GL I  ++     DRF +R++ P+R+ +G+VIAF GR L   E +      KYL
Sbjct: 180 QQMEESGLFIARNDD--FIDRFYHRIMIPLRNEQGKVIAFSGRILPNDEEMVDEQEAKYL 237

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS ET +F+K + L+N+  A + ++K          +  ++L EGYMDV++  QAG +N 
Sbjct: 238 NSSETPIFNKRQFLFNYDLAKSAIRK----------TGQVVLYEGYMDVIASWQAGAKNG 287

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GT+LT+ Q+++L +++  I++ +D D  GL A  +AI+L+         ++ + L 
Sbjct: 288 VASMGTSLTKEQIQILSRVANEIIIAYDSDRAGLDATNRAIELL--QENSALTISILSLD 345

Query: 355 RGEDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            G+DPD FI+  G  A+ E+L   +  +     +  ++        E+ +    +   + 
Sbjct: 346 AGKDPDEFIQQRGAEAYLEQLAHHTESVFQFKKRYFSKQYRLEIEREKVQFLEQMTIELA 405

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            I     R +  +++ D      +   ++ +   R +K+ + H      S     +S ++
Sbjct: 406 KISKPIEREFAIKSLADEYGISAELLSSQVNFVQRKFKQQSSH------STGEWTASPMR 459

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                   + +  LL  L++ P       +E  +  +   + Q+ +  L S   +     
Sbjct: 460 ISQDGPMEVSQKQLLYRLLHSPEAWSYLARENEEFEFPYVDYQQFYILLRSYREQH---- 515

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                + L  + F   L + D   R+        E       +     +    +   L +
Sbjct: 516 ----LEELLVQEFMNFLDESDAVNRNLLSMIEWLEMPEECTEKEIHDLMYFLSKKEDLKQ 571

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           Q +   +++ +     +A +   L+  L  +  Q+ +
Sbjct: 572 QYQRCMQEMKEAQLSNDATRANQLMMELVNIQKQLKK 608


>gi|221068480|ref|ZP_03544585.1| DNA primase [Comamonas testosteroni KF-1]
 gi|220713503|gb|EED68871.1| DNA primase [Comamonas testosteroni KF-1]
          Length = 664

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 149/475 (31%), Positives = 231/475 (48%), Gaps = 26/475 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+ FI++LL  + + +++G+YV   +   N     +   CPFH EK+PSF  + SK 
Sbjct: 1   MAIPQSFIQELLSRVDVVDIVGRYVQLKKGGAN-----FMGLCPFHGEKSPSFTVSPSKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK------KEKIQ 114
           F++CF C   G+ + FL    G  F+E+VQ LA   G+ +P  D    +      +++  
Sbjct: 56  FFHCFGCGKNGNAIGFLMEHAGMGFVEAVQELANQCGLQVPQDDISPAERQRQAQQKQKA 115

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  L+E A + +   LK     +   YL +RG+     + F LGYAP   + L     
Sbjct: 116 ETLSDLLEKAGESYRKQLKA--APKAIEYLKKRGVSGEVSKRFGLGYAPAGWHGLASVFA 173

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
              +   ++ E GL+I G++ +  YDRFR+RL+FPIR+ +G+ I FGGR     E  KYL
Sbjct: 174 --EYDNPQLEECGLVIVGEDDSRRYDRFRDRLMFPIRNVKGECIGFGGRVF-GDEKPKYL 230

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKG+ LY  + A   L+             + ++ EGYMDV++L Q G  N 
Sbjct: 231 NSPETPVFHKGRELYGLYEARQALR----------DMGYALVTEGYMDVVALAQLGFANA 280

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V++LGTA T   ++ L++ +  +V  FDGD  G RAA KA+D  L        + F+ L 
Sbjct: 281 VATLGTACTPEHVQKLFRFTDAVVFSFDGDGAGRRAARKALDAALPLATDTRSIKFLFLP 340

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPDSFIR +G  AF + + ++ PL   L +  +E       + RA +  + +   + 
Sbjct: 341 SEHDPDSFIREFGPEAFSRYVGDATPLSRFLIESASEGCDLGQTEGRAHMASNARPLWSL 400

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
           + D  L+      I    Q   +      +         +R      PS      
Sbjct: 401 LPDGALKRQLLSEIAALAQLDSRDLTDIWAQEAARTAPISRRAPAAAPSGPQAPE 455


>gi|304312383|ref|YP_003811981.1| DNA primase [gamma proteobacterium HdN1]
 gi|301798116|emb|CBL46338.1| DNA primase [gamma proteobacterium HdN1]
          Length = 724

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 155/477 (32%), Positives = 235/477 (49%), Gaps = 24/477 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI DLL  + +  LI +++   R   N  +     CCPFH EKTPSF  +  K F
Sbjct: 4   RIPDQFIDDLLSRVDLVALIDRHLPLKRSGRNFTR-----CCPFHQEKTPSFSVSPEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C   G+ +SFL      SF+E+++ LA   G  +P  + +  K   ++  L +++
Sbjct: 59  YYCFGCGASGNAVSFLMDYSHLSFVEAIESLAKSIGAEVPRDEQQHPKGPDLR-PLYQIL 117

Query: 122 EVATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           E A  FF   LK +R++     YL +R +D+  IE F+LGYAP    +L   L     ++
Sbjct: 118 EQARAFFSAQLKKSRERERALGYLRKRQLDAEIIERFQLGYAPPGWDNLISALGTSSQAK 177

Query: 181 EKIIEAGLLIDGDNSATS------YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
             +++ G+++      T       YDRFR+R++FPIR + G+ IAFGGR L   E  KYL
Sbjct: 178 ALLLQTGMVVQSQQEHTPSQQARSYDRFRDRIMFPIRDASGRTIAFGGRVL-GDEKPKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKGK LY F+ A     K  R           I+VEGYMDV++L Q+G+   
Sbjct: 237 NSPETPVFHKGKTLYGFYEARQARGKLER----------FIVVEGYMDVIALAQSGITCA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V++LGTA T   +  L+++   +V CFDGD  G  AA++A++  L  +  G    F  L 
Sbjct: 287 VATLGTACTREHVETLFRIVDEVVFCFDGDRAGRAAAWRALENTLPAMREGRTARFHFLP 346

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            GEDPD+ +R  G   F   + ++LPL + L+       +  T D RA+L       I  
Sbjct: 347 DGEDPDTQVRKDGPELFLAQLQKALPLPEYLFDHLMGELNIQTLDGRAKLAHLALPLIEQ 406

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +    L+      + + ++       +            + H   + P +       
Sbjct: 407 LPKGVLQELMIDRLAELVRMSRSSLESMVKRAAPEPPSTSGHSQVRAPQKEPANDRA 463


>gi|283455603|ref|YP_003360167.1| dnaG DNA primase [Bifidobacterium dentium Bd1]
 gi|283102237|gb|ADB09343.1| dnaG DNA primase [Bifidobacterium dentium Bd1]
          Length = 690

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 137/700 (19%), Positives = 253/700 (36%), Gaps = 91/700 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G Y   CPFHDEKTPSF    + G +
Sbjct: 2   ILKEDVEKVRAAADLYDIVSATVTLKPSG----TGTYVGLCPFHDEKTPSFSVRPALGVW 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
           +CF C + GD   ++       F ++V+ LA    + L       + +     +  L+  
Sbjct: 58  HCFGCGLGGDVFGYVEQQENIDFRDAVELLADRYHIELRYDQANAKPEHAGSKRARLLEA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A +FF   L           LD R       + F  GYAP    +L  HL  KGF++
Sbjct: 118 NEAAQEFFVSQLMTREALAARKLLDGRNFSQADCQRFGCGYAPQGWDNLVRHLAGKGFTQ 177

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           +++++AGL          YD FR R+ +PIR S G+ + FG R L + +  + KY+N+P+
Sbjct: 178 KEMLDAGLARQ--GQHGVYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDAINAKYINTPD 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A + + K             +++VEGY DV+++  AG+   +++ 
Sbjct: 236 TQLYRKNQVLYGIDMAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIATC 285

Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336
           GTA      +++ +L                        RIV  FDGD  G +AA  A  
Sbjct: 286 GTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVEGQALSSRIVFTFDGDAAGQKAAIHAFG 345

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
           L    L   ++    +     DP       G  A   LI ++ PL D + +         
Sbjct: 346 LDSAFL---SQTFVAVADDNLDPCDLRIKRGNEAVRSLIEQAKPLYDFVIEAAIGRFDTT 402

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------- 449
               +      +   I  I+D+ L   Y++    R+         E     R        
Sbjct: 403 YTTGQMGAVKAVAPLIAQIRDRSLLDLYTRKAVRRIGIDLDIMQREVRDARRKLNVRDDD 462

Query: 450 --------------------WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
                                     +R  +   +    +     ++     + E   + 
Sbjct: 463 AYAPKRRYVGGNAVEQRVEQGANPYENRSVRKALEHRDATEQTYYRIDDAVFICEQQFMA 522

Query: 490 TLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           TLI  P  ++   +  L    +     + L+  + +         P+ +      +  G 
Sbjct: 523 TLIQVPRAVEPSMFAGLTLSNFITPVFRSLFQAVAAAGGLPSEDTPQGLWMHNLTKAGGP 582

Query: 549 LLKQLDRQVRDAGLWSATTEANIV------------------DVRQGYQQALALYKRFRL 590
           +L+ +  ++    L    +E ++                   D  + Y   L        
Sbjct: 583 MLESVINELAVMPLPLPPSEDDMNMGRASREQEGAVQLRKPTDAERRYASELLARLLDMG 642

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           L R+    ++++AQ+   GE  +    ++ +  +   +  
Sbjct: 643 LMRKIGAAKRRMAQLPDGGEKIELLGQVTNMEALRKDLQA 682


>gi|171741009|ref|ZP_02916816.1| hypothetical protein BIFDEN_00075 [Bifidobacterium dentium ATCC
           27678]
 gi|171276623|gb|EDT44284.1| hypothetical protein BIFDEN_00075 [Bifidobacterium dentium ATCC
           27678]
          Length = 693

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 137/700 (19%), Positives = 253/700 (36%), Gaps = 91/700 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G Y   CPFHDEKTPSF    + G +
Sbjct: 5   ILKEDVEKVRAAADLYDIVSATVTLKPSG----TGTYVGLCPFHDEKTPSFSVRPALGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
           +CF C + GD   ++       F ++V+ LA    + L       + +     +  L+  
Sbjct: 61  HCFGCGLGGDVFGYVEQQENIDFRDAVELLADRYHIELRYDQANAKPEHAGSKRARLLEA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A +FF   L           LD R       + F  GYAP    +L  HL  KGF++
Sbjct: 121 NEAAQEFFVSQLMTREALAARKLLDGRNFSQADCQRFGCGYAPQGWDNLVRHLAGKGFTQ 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           +++++AGL          YD FR R+ +PIR S G+ + FG R L + +  + KY+N+P+
Sbjct: 181 KEMLDAGLARQ--GQHGVYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDAINAKYINTPD 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A + + K             +++VEGY DV+++  AG+   +++ 
Sbjct: 239 TQLYRKNQVLYGIDMAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIATC 288

Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336
           GTA      +++ +L                        RIV  FDGD  G +AA  A  
Sbjct: 289 GTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVEGQALSSRIVFTFDGDAAGQKAAIHAFG 348

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
           L    L   ++    +     DP       G  A   LI ++ PL D + +         
Sbjct: 349 LDSAFL---SQTFVAVADDNLDPCDLRIKRGNEAVRSLIEQAKPLYDFVIEAAIGRFDTT 405

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------- 449
               +      +   I  I+D+ L   Y++    R+         E     R        
Sbjct: 406 YTTGQMGAVKAVAPLIAQIRDRSLLDLYTRKAVRRIGIDLDIMQREVRDARRKLNVRDDD 465

Query: 450 --------------------WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
                                     +R  +   +    +     ++     + E   + 
Sbjct: 466 AYAPKRRYVGGNAVEQRVEQGANPYENRSVRKALEHRDATEQTYYRIDDAVFICEQQFMA 525

Query: 490 TLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           TLI  P  ++   +  L    +     + L+  + +         P+ +      +  G 
Sbjct: 526 TLIQVPRAVEPSMFAGLTLSNFITPVFRSLFQAVAAAGGLPSEDTPQGLWMHNLTKAGGP 585

Query: 549 LLKQLDRQVRDAGLWSATTEANIV------------------DVRQGYQQALALYKRFRL 590
           +L+ +  ++    L    +E ++                   D  + Y   L        
Sbjct: 586 MLESVINELAVMPLPLPPSEDDMNMGRASREQEGAVQLRKPTDAERRYASELLARLLDMG 645

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           L R+    ++++AQ+   GE  +    ++ +  +   +  
Sbjct: 646 LMRKIGAAKRRMAQLPDGGEKIELLGQVTNMEALRKDLQA 685


>gi|319947290|ref|ZP_08021523.1| DNA primase [Streptococcus australis ATCC 700641]
 gi|319746532|gb|EFV98792.1| DNA primase [Streptococcus australis ATCC 700641]
          Length = 641

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 142/633 (22%), Positives = 262/633 (41%), Gaps = 48/633 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + K FY+
Sbjct: 50  DKQLISEIKNSVNIVDVIGEVVQLTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFYH 104

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRLIE 122
           CF C   GD   F+    G SF+E+VQ +    G+ +    P+   ++   +     + +
Sbjct: 105 CFGCGKSGDVFKFIEDYRGVSFMEAVQIVGDQVGIHVQTHAPQSRGQQADGKQPFYEIHQ 164

Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A  F+H  L      +    YL +RG+D   +  F++G AP     L + +  K   + 
Sbjct: 165 EAAKFYHAILMTTKMGEDARQYLYDRGLDDEVLRHFQIGLAPAEGNYLYQSVSGKFSEKI 224

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESVKYLNS 236
                   I      T YD F+NR++FP+    G+VIAF GR   +         KY NS
Sbjct: 225 MAESGLFHISDMG--TIYDAFQNRIMFPLSDDTGRVIAFSGRLWREPVEGAKPQGKYKNS 282

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
             T+LF+K   LY+   A    +K          +  + L+EG+MDV++  +AG++N V+
Sbjct: 283 RSTLLFNKSYELYHLDKAKQVAKK----------NHELYLMEGFMDVIAAYRAGIENAVA 332

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S+GTALT+  +  L K + +++L +DGD  G  A  KA++++  H +       V +   
Sbjct: 333 SMGTALTQEHVAHLSKFTKKVILAYDGDKAGRLATAKALEVLDKHEVE-----VVQIPDQ 387

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD ++      A   L+ ++            +  +      + E    +   I    
Sbjct: 388 MDPDEYLNKNSPQALADLLEKTRLSRVEFLMDYWKPDNIENLQAQIEFVEKMAPLIAQTP 447

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               +  Y   + D L       + +     R   ++ R    +  +Q  + S  V  K 
Sbjct: 448 SVTAQNTYIYKLADLLADFDYLQVEQTVNASRLQMRSQRQEQTQIQTQAPLASPTVLQKQ 507

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +    E  LL  +   P +L E  +   D  +D   LQ L+  L              
Sbjct: 508 LPRLVRAENHLLHRMNAFPYVLNEY-RLRTDFSFDTPALQILYQLLCQ------------ 554

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            +  +  +   E  +++ R       +    E    ++ +   + +   +   LL ++ +
Sbjct: 555 -NGEVTSQDLSEQTEEVQR-----AWYLMLEENLPDEIAENELEEVEETRNRELLRKESQ 608

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +I K++ + +  G+A++  + +  L     ++ 
Sbjct: 609 QIGKKVREASHSGDADQALLELERLIAQKRRME 641


>gi|213964162|ref|ZP_03392400.1| putative DNA primase [Capnocytophaga sputigena Capno]
 gi|213953203|gb|EEB64547.1| putative DNA primase [Capnocytophaga sputigena Capno]
          Length = 656

 Score =  337 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 160/669 (23%), Positives = 283/669 (42%), Gaps = 63/669 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I  +   + +  +IG +V   R  +N     Y    PF +E+TPSF  +  K  +
Sbjct: 2   ISKNTIDKVYDQMRVEEVIGDFVQLKRAGSN-----YKGLSPFSNERTPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA    + +   +   E+K +   +  L  +
Sbjct: 57  KDFSSGKGGNAIAFLMEHEHFTYPEAIRYLAKKYHIDIEETEQSNEEKAQADERESLYIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +F  +L N    +     Y  ERG     I+ F+LG++PD   +  +    KG+
Sbjct: 117 SEYAQQYFQDTLFNTEAGKAIGMTYFKERGFTEETIQKFRLGFSPDEWTAFTDTALAKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
             E + + GL I   N    +DRF+ R++FPI S  G+V+ FGGR L+  +   KYLNSP
Sbjct: 177 QLEFLEKTGLTIV--NGDRKFDRFKGRVMFPIHSMSGRVLGFGGRILTNDKKQAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  F A   + K          +    LVEGY DV+ + Q G++NVV+S
Sbjct: 235 ESEIYHKSKVLYGIFFAKQAIAK----------ADNCYLVEGYTDVIQMHQKGIENVVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT+ Q+RL+ +L+P I + +DGD  GLRA+ + +DL    L  G  V       G+
Sbjct: 285 SGTALTQDQIRLIHRLTPNITVLYDGDAAGLRASIRGVDL---ILEQGMNVKVCTFPDGD 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R          +  +               + N P ++AE    +   I+ I D
Sbjct: 342 DPDSFARKTAYEDLVLYLENNATDFIRFKASLLMQEAQNDPIKKAETIRDMVESISKIPD 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGK 475
              R  Y +     +    Q   +  +   +   ++     R QK   Q +      + +
Sbjct: 402 LIKREVYVRECASIMDISEQVLFSTLAQILKKDFYEGQKVERKQKAAMQVVQTPEEAQKR 461

Query: 476 LSKKPSLREAALLLTLINHP----------------------------AILQEQYQEL-- 505
              +  + E  L+  L+ +                              + ++ + EL  
Sbjct: 462 TVNRLEVLEYDLIKNLLLYGNRECIFTDTILVEEEDGTLKEQQIQQTLKVYEKIFLELQE 521

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFL----PEEIHQRLCERGFGELLKQLDRQVRDAG 561
            +I   N + ++++  L     E   +       E+   L E+  G LL   + Q+ D  
Sbjct: 522 DEIELANPDFKQIYELLMGKLSENPAYDVNRIANELPIELSEKVSGMLLDDENNQLHDWS 581

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                 +A    + +     + L  R  L+    + + +Q+AQ   + + E    +++  
Sbjct: 582 KRDIVPKAKDAHL-ETIVGDIILNIRNLLVHHLIQSLTQQMAQANEEEKKELLENVMN-Y 639

Query: 622 HEVHIQIHQ 630
            ++   + +
Sbjct: 640 IQLQKLLAK 648


>gi|322387733|ref|ZP_08061342.1| DNA primase [Streptococcus infantis ATCC 700779]
 gi|321141600|gb|EFX37096.1| DNA primase [Streptococcus infantis ATCC 700779]
          Length = 591

 Score =  337 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 136/629 (21%), Positives = 259/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG+ +   +   N     +   CPFH EKTPSF+  + K FY+
Sbjct: 8   DKRVIEEIKNNTNIVEIIGEVISLQKSGRN-----FLGLCPFHGEKTPSFNVVEDKQFYH 62

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+      +F ++V+ L    G+ L     K         +L  + + 
Sbjct: 63  CFGCGRSGDVFKFIEEYQQVTFADAVRMLGERLGIHLEAPAHKPVPHTSPHQNLYDMHDK 122

Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    I+ F +G AP  R  L + L    +SE+ 
Sbjct: 123 AARFYHAILMTTKMGEEARNYLYKRGLTDDVIKHFMIGLAPAERSYLYQRLAD-DYSEKD 181

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL      S   +D F NR+IFP+ + +G+VIAF GR   + +S   KY NS  T 
Sbjct: 182 LLDSGLFYLS-ESNQFFDTFHNRIIFPLSNDQGKVIAFSGRIWQETDSQTAKYKNSRATE 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+         K          +  I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 241 IFNKSYELYHLDRVKKGSGK----------APEIYLMEGFMDVIAAYRAGIENAVASMGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT   +  L + + ++++ +DGD  G  A  KA++ +         V  V +    DPD
Sbjct: 291 ALTAEHVEHLKRFTKKVIITYDGDKAGQAATAKALEEL-----GDLPVQIVQIPDAMDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++         L+  +       +    +  +      + E    +   I        
Sbjct: 346 EYLQKNSPEDLAYLLSNTRISPIEFYIHHYKPSNSENLQAQIEFIEKIAPLIVKEPSITA 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L     + +       R  ++  + +    P+   M  S    K     
Sbjct: 406 QNTYIHLLTDHLPSFDYQQVEHIINESRVRQRQEKVKQVVNPTPITMSVS----KQLTAV 461

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA +L  ++ HP ++   Y+      ++  E Q L+  L               +  
Sbjct: 462 MRAEAHILYRMMEHP-LVLNDYRLRDGFVFETPEFQTLYGLLID-------------NGS 507

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +         ++++            +E +  ++++     +   +   LL++Q  +I+K
Sbjct: 508 ISSEDLANQTREVENAWYQVLALDLPSEMSPEELKE-----VEESRNRALLNQQNLQIKK 562

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 563 KVQEASHVGDTDAALEELERLIAQKRRME 591


>gi|306823360|ref|ZP_07456735.1| DNA primase [Bifidobacterium dentium ATCC 27679]
 gi|309802698|ref|ZP_07696802.1| DNA primase [Bifidobacterium dentium JCVIHMP022]
 gi|304553067|gb|EFM40979.1| DNA primase [Bifidobacterium dentium ATCC 27679]
 gi|308220762|gb|EFO77070.1| DNA primase [Bifidobacterium dentium JCVIHMP022]
          Length = 693

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 137/700 (19%), Positives = 253/700 (36%), Gaps = 91/700 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G Y   CPFHDEKTPSF    + G +
Sbjct: 5   ILKEDVEKVRAAADLYDIVSATVTLKPSG----TGTYVGLCPFHDEKTPSFSVRPALGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
           +CF C + GD   ++       F ++V+ LA    + L       + +     +  L+  
Sbjct: 61  HCFGCGLGGDVFGYVEQQENIDFRDAVELLADRYHIELRYDQANAKPEHAGSKRARLLEA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A +FF   L           LD R       + F  GYAP    +L  HL  KGF++
Sbjct: 121 NEAAQEFFVSQLMTREALAARKLLDGRNFSQADCQRFGCGYAPQGWDNLVRHLAGKGFTQ 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           +++++AGL          YD FR R+ +PIR S G+ + FG R L + +  + KY+N+P+
Sbjct: 181 KEMLDAGLARQ--GQHGVYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDAINAKYINTPD 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A + + K             +++VEGY DV+++  AG+   +++ 
Sbjct: 239 TQLYRKNQVLYGIDMAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIATC 288

Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336
           GTA      +++ +L                        RIV  FDGD  G +AA  A  
Sbjct: 289 GTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVEGQALSSRIVFTFDGDAAGQKAAIHAFG 348

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
           L    L   ++    +     DP       G  A   LI ++ PL D + +         
Sbjct: 349 LDSAFL---SQTFVAVADDNLDPCDLRIKRGNEAVRSLIEQAKPLYDFVIEAAIGRFDTT 405

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------- 449
               +      +   I  I+D+ L   Y++    R+         E     R        
Sbjct: 406 YTTGQMGAVKAVAPLIAQIRDRSLLDLYTRKAVRRIGIDLDIMQREVRDARRKLNVRDDD 465

Query: 450 --------------------WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
                                     +R  +   +    +     ++     + E   + 
Sbjct: 466 AYAPKRRYVGGNAVEQRVEQGANPYENRSVRKALEHRDATEQTYYRIDDAVFICEQQFMA 525

Query: 490 TLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           TLI  P  ++   +  L    +     + L+  + +         P+ +      +  G 
Sbjct: 526 TLIQVPRAVEPSMFAGLTLSNFITPVFRSLFQAVAAAGGLPSEDTPQGLWMHNLTKAGGP 585

Query: 549 LLKQLDRQVRDAGLWSATTEANIV------------------DVRQGYQQALALYKRFRL 590
           +L+ +  ++    L    +E ++                   D  + Y   L        
Sbjct: 586 MLESVINELAVMPLPLPPSEDDMNVGRASREQEGAVQLRKPTDAERRYSSELLARLLDMG 645

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           L R+    ++++AQ+   GE  +    ++ +  +   +  
Sbjct: 646 LMRKIGAAKRRMAQLPDGGEKIELLGQVTNMEALRKDLQA 685


>gi|294340366|emb|CAZ88747.1| putative DNA primase [Thiomonas sp. 3As]
          Length = 626

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 178/661 (26%), Positives = 277/661 (41%), Gaps = 78/661 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI+DLL    I  ++GQYV+  +  TN     Y   CPFH EKTPSF  + SK F
Sbjct: 4   RIPPGFIQDLLARADIVEVVGQYVELKKTGTN-----YKGLCPFHGEKTPSFTVSASKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD------PKIEKKEKIQT 115
           Y+CF C   G  + FL    G  F+++V+ LA   G+ +P  D       +I+++  +Q 
Sbjct: 59  YHCFGCGAHGTAIGFLMEHAGMGFVDAVKELARRYGMTVPEPDLDPQQLRQIQQQRSLQA 118

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L+  ++ A  F+ H L+    +R   YL  RG+     + F LGYAPD    L      
Sbjct: 119 TLVDALQTADGFYQHRLR--HSERAKNYLIARGLQGQVAKKFGLGYAPDDWQPLAGAFAN 176

Query: 176 KGFSEEKIIEAGLLID------------GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR 223
                       +  D              ++   YDR R+R+ FPIR+ RG+VI FGGR
Sbjct: 177 YNADALVQSGLVVARDAAGDTLDPQAESFASAQRRYDRLRDRITFPIRNLRGEVIGFGGR 236

Query: 224 TLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV 283
            + + E  KYLNSPET +FHKG+ LY  F A + + +          + + ++VEGYMDV
Sbjct: 237 IIDQSEP-KYLNSPETAVFHKGEELYGLFEARSAISR----------AGYALVVEGYMDV 285

Query: 284 LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343
           ++L Q GV+  V++LGTA T  QL+ L++ + ++V  FDGD  G RAA +A++  L  L 
Sbjct: 286 VALAQFGVEQAVATLGTACTAQQLQKLFRHTGQVVFSFDGDTAGRRAARRAMEQALPLLS 345

Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
               V F+ L    DPDS++R  G  AFE+ I  + PL + L+    +  +  T + RA+
Sbjct: 346 DTRVVKFLFLPAEHDPDSYVREKGAEAFEREIGRAQPLSEFLFSSLFDGVAMTTAEGRAQ 405

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
                   ++ I    L       +  RL+    +                R        
Sbjct: 406 AIHEAGPLLSQITAPALLGQLVADLARRLEMPATELREVL-----------RLSSPSRKP 454

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPA----------------ILQEQYQELAD 507
               +S  ++G  +          L      P                        + A 
Sbjct: 455 SAPAESFGMRGMKTAPRVRGGREALRAFAAVPKDPLRQLLPLLLSQPELWWSINPAQHAL 514

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
           +  +   LQ L   L S   +Q       + + L   G                + + + 
Sbjct: 515 LSLEPGPLQGLVLTLESILEDQPELSAAALWEALRAAGHA-----------PEEVLAESP 563

Query: 568 EANIVDVRQGYQQALALYKRFR--LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           +   +D     Q  LA+  R     L R+++E+      + A  +  +   L   L E+ 
Sbjct: 564 DPLELDEAAAKQDLLAILSRLERATLKRRQDELVA--GGLVADADRTEYRSLALRLKEID 621

Query: 626 I 626
            
Sbjct: 622 Q 622


>gi|76787887|ref|YP_330070.1| DNA primase [Streptococcus agalactiae A909]
 gi|76562944|gb|ABA45528.1| DNA primase [Streptococcus agalactiae A909]
          Length = 593

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 154/635 (24%), Positives = 275/635 (43%), Gaps = 48/635 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + + 
Sbjct: 1   MAIDKEKISEIKNSVNIVDVIGEVVGLTKTGRN-----HLGLCPFHKEKTPSFNVIEDRQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIR 119
           F++CF C   GD   F+      SF++SVQ LA  +G+PL      ++ KK K    L+ 
Sbjct: 56  FFHCFGCGRSGDVFKFVEDYQHISFLDSVQVLAERSGIPLDTNFKGQVPKKPKANQSLLD 115

Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           +  VA+ F+H  L      +R   YL ERG+    I+ F++G +P  +  L   L  K F
Sbjct: 116 IHRVASGFYHAYLMTTNDGERARQYLAERGVTEDLIKHFQIGLSPGGQDFLYRRLA-KEF 174

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234
            E+ ++ +GL    +NS   YD F NR++FP+ +  G+VIAF GR  ++ +      KY 
Sbjct: 175 DEKTLMSSGLFNYSENSNQFYDSFNNRIMFPLTNDIGEVIAFSGRVWTQEDIDRKQAKYK 234

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS  T +F+K   LY+   A   + K          +  + L+EG+MDV++  +AG++NV
Sbjct: 235 NSRATPIFNKSYELYHLDKARAVINK----------AHEVYLMEGFMDVIAAYRAGIENV 284

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +R L + + ++VL +DGD  G  A  K+++L+         V+ V + 
Sbjct: 285 VASMGTALTNEHVRHLKRFTKKVVLTYDGDRAGQNAIDKSLELL-----SDMTVDIVRIP 339

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD F++      F++L+ +        +    +  + +           +   I  
Sbjct: 340 NKMDPDEFLQANSAEDFKQLLEKGRISNTEFYIHYLKPENTDNLQSEIAYVEKIAKLIAK 399

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                 +  Y   + + L       + +     R   ++ +       +   +Q  L + 
Sbjct: 400 SPSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHHRSQQQASPSVQTSATVQ--LPQT 457

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                 +  E  L   L+NHP +L E      +  +D  E+Q L+  L            
Sbjct: 458 GKLSAITKTEMQLFHRLLNHPYLLNEFRNR-DNFYFDTTEIQVLYQLLKESGE------- 509

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                 +      +   +++R            E +I ++ +  ++A     + R L +Q
Sbjct: 510 ------ITSYDLSQESDKVNRTYYMILEEQLPVEVSIGEI-EAVEKARDRLLKERDLRKQ 562

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                + I Q + +G+ E     +  L      + 
Sbjct: 563 ----SQLIRQSSNQGDQEGALAALENLIAQKRNME 593


>gi|30248252|ref|NP_840322.1| CHC2 zinc finger [Nitrosomonas europaea ATCC 19718]
 gi|30180137|emb|CAD84139.1| CHC2 zinc finger [Nitrosomonas europaea ATCC 19718]
          Length = 600

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 181/631 (28%), Positives = 286/631 (45%), Gaps = 63/631 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             + FI++LL  I I +++ +++   +   N     + ACCPFH+EKTPSF  N SK FY
Sbjct: 2   IEQSFIQELLDRIDIVDVVARHLQLKKAGAN-----FTACCPFHNEKTPSFTVNSSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114
           +CF C   G+ +SFL    G SF+E+V+ LA  AG+ +P          DP     +KI+
Sbjct: 57  HCFGCGRHGNAISFLMEHSGASFVEAVESLATHAGMQIPDQVSIYPKIPDPGRVPSDKIK 116

Query: 115 -----------TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAP 163
                        L   +E A  F+   LK +   +   YL ERGI       F +GYAP
Sbjct: 117 IDKEVEATSPLAGLYERMEQAAKFYRGQLKQSD--QAIAYLKERGISGRTALCFGIGYAP 174

Query: 164 DSRYSLREHLRQ-KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222
               +L               +    L+   +   +YDRFR+R++FPI   + +++ FGG
Sbjct: 175 PGWQNLSGIFTDYPADDSSHPLVQAGLVVAHDGKKNYDRFRHRIMFPILDRKKKIVGFGG 234

Query: 223 RTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD 282
           R L  GE  KYLNSPET LF KG+ LYN   A   ++KS R          +I+VEGYMD
Sbjct: 235 RALDGGEP-KYLNSPETSLFVKGRELYNLASASPAIRKSAR----------VIVVEGYMD 283

Query: 283 VLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342
           V+ L Q+GV+NVV++LGTA T   ++ L + +  +V CFDGD  G +AA++A++  L  L
Sbjct: 284 VVMLVQSGVENVVATLGTATTAMHIQNLLRHTDEVVFCFDGDAAGTKAAWRALETSLPQL 343

Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
             G  + F+ L   EDPDS+IR YG+ AFE L+ ++ PL        +   +  T + RA
Sbjct: 344 KDGKDIKFLFLPDKEDPDSYIRKYGRVAFEGLLEKAQPLSVFFCNELSGRVNLGTSEGRA 403

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
            L       +  I        +   +  R+ +L      + + + +  KKN     +   
Sbjct: 404 RLVQRAGPLLAQINAPV----FGFMLTKRISELTGVGQNQLAAFLKTGKKNRSSTLRPEA 459

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           S+ L  +                 L+  L++ P    +    L  +  + NE + L   L
Sbjct: 460 SRPLSVTPY-------------RRLIQILLHAPDYANKLDTNLLAVNDEQNEEKVLLVAL 506

Query: 523 FSDFVE-----QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL-WSATTEAN--IVDV 574
                      ++      I     +     LL+++ R        W+   E    +  +
Sbjct: 507 VDFLKTSACSMEEELNSVTILLHFDQTPHRVLLEKIVRDAHVKDENWNIDAEFTGGMERL 566

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
           R+  +++       R L     E + ++ Q+
Sbjct: 567 REMQRRSRMAELHSRPLVSLTPEEKNELRQL 597


>gi|74318405|ref|YP_316145.1| DNA primase [Thiobacillus denitrificans ATCC 25259]
 gi|74057900|gb|AAZ98340.1| DNA primase [Thiobacillus denitrificans ATCC 25259]
          Length = 565

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 182/612 (29%), Positives = 274/612 (44%), Gaps = 54/612 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PRDFI  LL  + I ++I + V   +   N     Y ACCPFH EKTPSF  + SK FY
Sbjct: 2   IPRDFIDTLLSRVDIVDVIDRRVPLKKAGQN-----YQACCPFHSEKTPSFTVSPSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G  L FL      SF +SV  LA  AG+P+P    +  ++ K    L   +E
Sbjct: 57  HCFGCGAHGTALGFLMEYEHMSFPDSVAALAEDAGLPMPESSLE-PERPKPPPALWDALE 115

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  F+   LK  +      YL +RG+       + +GYAPD        L++     + 
Sbjct: 116 QAARFYKQQLK--QAPHAIDYLKQRGLSGAIAARYGIGYAPDGS-----PLKRVFADYDA 168

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
              A   +  DN    YDRFR+R++FPIR+ +GQ++ FGGR L +GE  KYLNSPET LF
Sbjct: 169 EALAASGLVVDNEGRRYDRFRDRIMFPIRNVKGQIVGFGGRVLGQGEP-KYLNSPETPLF 227

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           HKG  +Y  F                  ++ +++VEGYMDV++L Q GV+  V++LGTA 
Sbjct: 228 HKGSEIYGLFE----------ARAAIKRAARVVVVEGYMDVVALAQHGVEFAVATLGTAT 277

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T    R L + S R+V  FDGD  G +AA++A++  L  L  G  V+F+ L  GEDPDS+
Sbjct: 278 TPVHARTLLRHSDRLVYAFDGDAAGRKAAWRALENSLEALQDGKEVSFLFLPEGEDPDSY 337

Query: 363 IRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           IR +G  AF +L+   +LPL   L +     R  +T + +A L    K  +  I    L 
Sbjct: 338 IRDHGCDAFLRLLDNETLPLSAFLMRELARGRRLDTQEGQATLLKDAKPLLEKIGAPLLA 397

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + I +    L Q  + + S  G                  +    L   +  +   
Sbjct: 398 RLIQRQIAE----LTQLQVGDLSAMGLR---------------PVASRPLPPRQQRRIAP 438

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYD--NNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            R   L   L+ +P    E       + +D  +         L +   E        + +
Sbjct: 439 SRLRGLARILLMNPQRASEV----EPLWFDARDPLHAT-AGELIAWLREVGPLRLHTLAE 493

Query: 540 RLCERGFGELLKQLDRQVRDAG---LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                G  + + +L   + D      W+A  E  +  +R  +++        R L+    
Sbjct: 494 AAKGSGMEDFVNELMVDLLDKDDTWDWNAEFEGAVQQLRDDWRRRRVQELAARPLASLSV 553

Query: 597 EIEKQIAQVTAK 608
           E  +++  +   
Sbjct: 554 EERRELGDLARS 565


>gi|319899965|ref|YP_004159693.1| DNA primase [Bacteroides helcogenes P 36-108]
 gi|319414996|gb|ADV42107.1| DNA primase [Bacteroides helcogenes P 36-108]
          Length = 682

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 160/683 (23%), Positives = 290/683 (42%), Gaps = 80/683 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I++++  +V   +R  N     Y   CPFHD+KTPSF+ + +KG  
Sbjct: 2   IDQATIDRILDAAQITDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPAKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+      S+ E+++ LA   G+ +   +   E+K  +  +  L  +
Sbjct: 57  KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSNEEKIIQSERESLFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A D+F + L N  D R     Y   RG     IE F+LGY  +S  +L +   +KG+
Sbjct: 117 NQFARDYFQNILHNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDALAQEALKKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +I+ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 177 KQEYLIKTGLCYET-DDHRVRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGIKVKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+GV+NVV
Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+R++ + +  + + +DGDD G+ A+ + ID+    L  G  +   LL  
Sbjct: 286 ASSGTALTSGQIRMIHRFTNNMTILYDGDDAGIHASLRGIDM---LLEEGMNIKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F+  I ++               +   P +RAEL  +L   I+ I
Sbjct: 343 GDDPDSFARKHNATEFQTFIKDNETDFIRFKTNLLLKEADKDPIKRAELIGNLVQSISVI 402

Query: 416 KDQKLRYYYSQAIRDRL--------------------QQLFQKYITEHSGYGRYWKKNAR 455
            +  +R  Y +     L                    QQ+ +      S           
Sbjct: 403 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRREKQTEQQVERAERERRSANAAKENTEYP 462

Query: 456 HRDQKGPSQRLMQSSLV------------KGKLSKKPSLREAALLLTLINHPA------- 496
           +            + L             +GK  ++    E  +L  ++ +         
Sbjct: 463 NNYPPETFPPEAPTPLPSAAEEYTSFIPQEGKEGQEFYKYERLILQMVVRYGEKIMCNIT 522

Query: 497 ----------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                     + +    +L   ++ + N   +++ +        + +           + 
Sbjct: 523 NEAGKEVPITVTEYIVNDLKEDELAFHNPLHRRILAEAAEHIHNEGFISERYFLAH-PDA 581

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ--QALALYKRFRLLSRQKEEIEKQI 602
              +L  +L         + + ++  + D  + Y+    L +  ++ ++S + + I   +
Sbjct: 582 TISKLSVELISNRYQLSKYHSKSQKIVTDEERLYELVPTLMINFKYAIVSEELKHIMSAL 641

Query: 603 AQVTAKGEAEKTAILISILHEVH 625
                  +  +   ++   +E+ 
Sbjct: 642 QDPAVINDETRCNNIMKRYNELR 664


>gi|258648570|ref|ZP_05736039.1| DNA primase [Prevotella tannerae ATCC 51259]
 gi|260851347|gb|EEX71216.1| DNA primase [Prevotella tannerae ATCC 51259]
          Length = 644

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 160/654 (24%), Positives = 297/654 (45%), Gaps = 51/654 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  I+ ++    I +++  YV   +   N         CPFH+EKTPSF  + +K   
Sbjct: 2   IDRQTIQRVMDAADIVDVVKDYVTLRKAGVNL-----KGLCPFHNEKTPSFVVSPTKQLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
            CF C   G+ + FL  +   ++ E+++ LA   G+ +   +   E+++ I  +  ++ L
Sbjct: 57  KCFGCGKGGNAVHFLMEIEQLTYPEAIKTLAKKYGIEVKEKELSAEEQKSISMRESMLVL 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +F + L  ++D +     YL +RG+    I+ F LGY+  SR +L +    KG+
Sbjct: 117 NEWACSYFSNLLHESKDGQTIGLSYLRQRGLRDDIIKKFHLGYSSPSRDALAQTALNKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
           S++ +++ GL     ++    DR+ +R+IFPI S  G+VI FGGR + + ++V KY+NSP
Sbjct: 177 SKDLLVQTGLC-FETDNHQLRDRYHDRIIFPIHSVSGRVIGFGGRIMQQNKNVGKYINSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E++++ K + LY  + A   + K               LVEGYMDV+++ Q+G++NVV+S
Sbjct: 236 ESVIYDKSRELYGLYFAKKAIVK----------EDACYLVEGYMDVIAMHQSGIENVVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GT+LTE Q+RLL + +  IV+ +DGD  G+ A+ + IDL    L  G  +  + L  GE
Sbjct: 286 SGTSLTEGQIRLLHRFTSNIVVLYDGDAAGIHASLRGIDL---LLKEGLNIKVLTLPNGE 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R +    F   +                  + + P +R+E    +   I  + +
Sbjct: 343 DPDSFARKHSAETFRAYLQAEAVDFIRFKAAMLIKETADDPIKRSESVSDIIRSIAIVPN 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R  Y++     +    Q  ++E + + +  +     R Q         +S+ +   +
Sbjct: 403 GITRQTYARECAKLMDIDEQLILSEAAKFRKEERIKGADRPQNNAGNPQKTTSIAESINT 462

Query: 478 ---KKPSLREAALLLTLI----------------NHPAILQEQYQELA--DIRYDNNELQ 516
              K    +E AL+  +I                   +I+    ++LA  +I+  N   Q
Sbjct: 463 LTLKAGEEQERALIREIICVGEQKLRFANKHGETKEKSIITFIAEDLAADNIKLQNPLHQ 522

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
           K+      +  ++ +   +              +  L  Q+  A       E       Q
Sbjct: 523 KIIDEAQKEVEQKDFVARDYFINH-----PDADINALAMQLTTASEKLTKAEIEHEKGLQ 577

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
                + L  ++R    + ++IE+++ ++    + E    L+   H+++ +I +
Sbjct: 578 ETVVHILLEYKYRFFKNELKKIEEEMTKLMQAKDYENCRSLM-EQHKIYAEILK 630


>gi|326794300|ref|YP_004312120.1| DNA primase [Marinomonas mediterranea MMB-1]
 gi|326545064|gb|ADZ90284.1| DNA primase [Marinomonas mediterranea MMB-1]
          Length = 687

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 152/481 (31%), Positives = 239/481 (49%), Gaps = 21/481 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    I++++   V   +   N     Y A CPFH+EKTPSF  N +K F
Sbjct: 4   RIPDQFIDELLARTDITDVVSSRVTLKKTGQN-----YSALCPFHNEKTPSFSLNPNKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C   G+ +SF+       F+E+++ LA  AG+ +P        + +   +L++ +
Sbjct: 59  YYCFGCGAGGNAISFVMEHDHLDFVEAIEVLAKDAGLEVPKE-KGAPDRYEQNAELLKRL 117

Query: 122 EVATDFFHHSLKNARDKRLH--YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             +  FF   L  ++ K+    Y   ERG+     +++ LG+AP    +L + + ++   
Sbjct: 118 TESAHFFQSQLTQSQFKKKATDYLASERGLSGQIAKVYGLGFAPPGWDNLLKAIGKRAEQ 177

Query: 180 EEKIIEAGLLI-DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +E+++  G+LI   D     YDRFR+R++FPIR SRG+VIAFGGR     E  KYLNSPE
Sbjct: 178 QEQLLHGGMLIEKKDQQGQYYDRFRDRIMFPIRDSRGRVIAFGGRAF-GDEKPKYLNSPE 236

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F+K   LY  F A               +   II+VEGYMDV+ L Q G+ N V++L
Sbjct: 237 TAVFNKSHELYGLFEAKQ----------NTQNLDNIIVVEGYMDVIVLAQYGITNAVATL 286

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT++    +R L+KL  +I LCFDGD  G  AA + ++  L  +  G +V F+ L  GED
Sbjct: 287 GTSVNSQHIRKLFKLVNKITLCFDGDKAGRAAAIRGLEASLPVMQDGKQVRFLFLPDGED 346

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-D 417
           PDS +R  G+ AF+  + ++  L ++L++      + +  +  AE   +  + I  I  D
Sbjct: 347 PDSLVRQEGQDAFQARLEDANSLANVLFEHARNQVTLDHEEGDAEFARNAMSLIQQIPND 406

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R    + +        +          R     A    Q  PSQ    + +   + +
Sbjct: 407 ITYRSVLLKQLSKESGIEKETLNQVAIPTKRSSYTEAARNQQNEPSQHAYSNEIQADQRN 466

Query: 478 K 478
            
Sbjct: 467 D 467


>gi|2760547|emb|CAA63931.1| DNA primase [Synechococcus elongatus PCC 7942]
          Length = 616

 Score =  336 bits (862), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 165/565 (29%), Positives = 262/565 (46%), Gaps = 38/565 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +     I +++ + V   +R       D+   CPFHD+K+PSF  + +K F
Sbjct: 5   RLHPETIAAVKERADIVDIVSEQVVLKKRGK-----DFVGLCPFHDDKSPSFTVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           YYCFSC   G+ + FL  L   SF E V  LA    VP+         +++++   +  L
Sbjct: 60  YYCFSCGAGGNPIKFLMELGKQSFSEVVLDLAKRYQVPVRTLEVQQHQELQRQLSRRERL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175
             ++ VAT F+  SL+         YL   R +    I+ F+LGYAP    SL  H + Q
Sbjct: 120 YEVLAVATQFYEQSLRRPEGAAALDYLRRSRQLQESTIQKFQLGYAPAQWASLATHLIEQ 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K F  + + EAGL++   N    YDRFR+RL+ PI   +G+V+AFGGRTL  GE  KYLN
Sbjct: 180 KRFPADLVEEAGLVVARRNGQGYYDRFRDRLMIPIHDLQGRVVAFGGRTL-TGEEPKYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LF KGK L+    A   + K              ++VEGY DV++L  AG+ + V
Sbjct: 239 SPETTLFEKGKLLFGLDKARAAIAKQ----------DQAVVVEGYFDVIALHAAGIDHAV 288

Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVL 352
           +SLGTAL+  Q++LL +   S +IVL FD D  G +AA +AI  V      G  ++  + 
Sbjct: 289 ASLGTALSRQQVKLLSRYSESNQIVLNFDADRAGAKAAERAIGEVEDLAYQGQVQLRVLN 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+D D +++ +    + +L+  S   +D    +   +R+ +  D+   +   +   +
Sbjct: 349 LPGGKDADEYLQRHSVADYRELLARSPLWLDWQIDQLLRDRNLDQADQFQAVVQAIVQLL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             + +  LR +Y   + +RL Q   +   + +   R   +  R   Q         S   
Sbjct: 409 GKLPNTPLRTHYVHQVAERLSQGEARTAVQLASDLRAQVRGQRWHGQ--------ASRWE 460

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFLFSDFVEQ 529
           K          EA +L   ++ P +     + L D     +     + LW  +     E+
Sbjct: 461 KPGDVSIREQAEAQILKVYLHCPRLRLAVRKTLHDREIQGFSLQPHRLLWQAIAEI--EE 518

Query: 530 KYFLPEEIHQRLCERGFGELLKQLD 554
            +     ++Q     G G+ L  +D
Sbjct: 519 AHLGFAAMYQVERGEGNGDDLAAID 543


>gi|77412515|ref|ZP_00788813.1| DNA primase [Streptococcus agalactiae CJB111]
 gi|77161429|gb|EAO72442.1| DNA primase [Streptococcus agalactiae CJB111]
          Length = 593

 Score =  336 bits (862), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 154/635 (24%), Positives = 275/635 (43%), Gaps = 48/635 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + + 
Sbjct: 1   MAIDKEKISEIKNSVNIVDVIGEVVGLTKTGRN-----HLGLCPFHKEKTPSFNVIEDRQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIR 119
           F++CF C   GD   F+      SF++SVQ LA  +G+PL      ++ KK K    L+ 
Sbjct: 56  FFHCFGCGRSGDVFKFVEDYQHISFLDSVQVLAERSGIPLDTNFKGQVPKKPKANQSLLD 115

Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           +  VA+ F+H  L      +R   YL ERG+    I+ F++G +P  +  L   L  K F
Sbjct: 116 IHRVASGFYHAYLMTTNDGERARQYLAERGVTEDLIKHFQIGLSPGGQDFLYRRLA-KEF 174

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234
            E+ ++ +GL    +NS   YD F NR++FP+ +  G+VIAF GR  ++ +      KY 
Sbjct: 175 DEKTLMSSGLFNYSENSNQFYDSFNNRIMFPLTNDIGEVIAFSGRVWTQEDIDRKQAKYK 234

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS  T +F+K   LY+   A   + K          +  + L+EG+MDV++  +AG++NV
Sbjct: 235 NSRATPIFNKSYELYHLDKARAVINK----------AHEVYLMEGFMDVIAAYRAGIENV 284

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +R L + + ++VL +DGD  G  A  K+++L+         V+ V + 
Sbjct: 285 VASMGTALTNEHVRHLKRFTKKVVLTYDGDRAGQNAIDKSLELL-----SDMTVDIVRIP 339

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD F++      F++L+ +        +    +  + +           +   I  
Sbjct: 340 NKMDPDEFLQANSAEDFKQLLEKGRISNTEFYIHYLKPENTDNLQSEIAYVEKIAKLIAK 399

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                 +  Y   + + L       + +     R   ++ +       +   +Q  L + 
Sbjct: 400 SPSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHHRSQQQASPSVQTSATVQ--LPQT 457

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                 +  E  L   L+NHP +L E      +  +D  E+Q L+  L            
Sbjct: 458 GKLSAITKTEMQLFHRLLNHPYLLNEFRNR-DNFYFDTTEIQVLYELLKESGE------- 509

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                 +      +   +++R            E +I ++ +  ++A     + R L +Q
Sbjct: 510 ------ITSYDLSQESDKVNRTYYMILEEQLPVEVSIGEI-EAVEKARDRLLKERDLRKQ 562

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                + I Q + +G+ E     +  L      + 
Sbjct: 563 ----SQLIRQSSNQGDQEGALAALENLIAQKRNME 593


>gi|187736114|ref|YP_001878226.1| DNA primase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426166|gb|ACD05445.1| DNA primase [Akkermansia muciniphila ATCC BAA-835]
          Length = 599

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 157/636 (24%), Positives = 273/636 (42%), Gaps = 45/636 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I+ +L    I +++G Y+   R  +      + ACCPFH+EKTPSF  + S+  
Sbjct: 3   RIDEDSIRRVLEATDIVDVVGSYLPLKRAGS-----RWKACCPFHNEKTPSFIVDQSRQN 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIR 119
           + CF C   G  ++F+  +    F ++V+RLA  AG+ +   V D   E++ K +T L+ 
Sbjct: 58  FKCFGCGEGGSAITFVMKMENLGFADTVRRLAEKAGISIVEEVYDAAEERRRKARTALLV 117

Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             + A  FFH  L  + +      YL+ RG  +   + +++G+APDS        R++G 
Sbjct: 118 AHKKAAGFFHRLLLCSPKAAEARAYLNSRGYGADMAKRWQVGWAPDSSREFLAWARREGI 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
            ++ +I++GL   G+     Y RFR+RL+FPI +  G+ +AF GR L   E+V KY+NSP
Sbjct: 178 PDQVLIDSGLANRGERGD-LYARFRDRLMFPINNVYGECVAFSGRILRPQENVGKYVNSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +F KG  ++    A   + KS +           +L EG +DV++  +AG+   V+ 
Sbjct: 237 ETAIFKKGDVVFALDKARGPMGKSGKA----------LLCEGQIDVIACHEAGISFAVAP 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA T    R+L + + RIVLCFD D  G+ AA +A   +      G  +  V L  G+
Sbjct: 287 LGTAFTPEHARILSRYASRIVLCFDADKAGMAAADRAFRELAPF---GKDIYLVNLPAGD 343

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF++  GK AF  ++  +    ++  +R  E+   +     A     +   +  + D
Sbjct: 344 DPDSFMKREGKEAFSGMVERARSFFEVRIERARESGLLDDAASSAAFAREMTALLACMSD 403

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R   +  +  R++             GR   +      ++  ++ + Q   VK   +
Sbjct: 404 SVARDLATADVATRMRMAADNLRGAVRMAGRRKGQEQAQSAERKTAEEVPQHPPVKMDRA 463

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPE 535
                  A L    + +          + ++      ++ L     L             
Sbjct: 464 V------AVLCELALQNSRAQGLIVDRIEELL---EPMRLLQGGGILKKILARLPSPD-- 512

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                         L  L +  RDA          I DV +  Q+A +   +   L R  
Sbjct: 513 ------SPAAVQAFLVSLPQPERDALGMLNLEPIPIPDVDRSVQEACSGIAKA-ALERHI 565

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             +  ++       +A +   L  +  ++   +  +
Sbjct: 566 ASLMAEL--ADPSTDAARRLELSKLSVDLKRLLGTM 599


>gi|306825380|ref|ZP_07458720.1| DNA primase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432318|gb|EFM35294.1| DNA primase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 591

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 145/629 (23%), Positives = 265/629 (42%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 8   DKQVIEEIKNNTNIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G SF+E+VQ L    G+ L +      ++      L  + E 
Sbjct: 63  CFGCGRSGDVFKFIEEYQGVSFMEAVQLLGERVGIQLAMPVQSRPQQASPHQALYDMHEE 122

Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F++G AP  R  L + L  K F E+ 
Sbjct: 123 AARFYHAILMTTKMGEEARAYLYKRGLTDDVLKHFQIGLAPAERTYLYQRLSDK-FEEKD 181

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     +    YD F  R+IFP+ + +GQVIAF GR   + +S   KY NS  T 
Sbjct: 182 LLDSGLFYLS-DGNQFYDTFFGRIIFPLTNDKGQVIAFSGRIWQETDSQTAKYKNSRSTA 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K           + + L+EG+MDV++  +AG++N V+S+GT
Sbjct: 241 IFNKSYELYHLDKAKKGTGKI----------TELYLMEGFMDVIAAYRAGIENAVASMGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL++  +  L + + +IVL +DGD  G  A  KA++ +         V  V +    DPD
Sbjct: 291 ALSKEHVDHLKRFTKKIVLSYDGDKAGQAATAKALEEL-----KDFSVEVVRVPDAMDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++         L+ ++       +  + +  + +    + E    +   I   K    
Sbjct: 346 EYLQKNSAEDLAYLLTKTRISPIEFYIHQLKPENSDNLQAQIEFIEKIAPLIAKEKSITA 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L     + + +     R  ++  R ++++ P+      SL   +     
Sbjct: 406 QNSYIHILADNLPSFDYQQVEQIVNESRIVQRQERVKEEQPPA----AISLPVTRQLTAV 461

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA +L  +  +P +L +  +   D  +D  E Q L+  L                  
Sbjct: 462 MRAEAHILYRMAENPVVLNDY-RLREDFFFDTPEFQILYELLSEQGE------------- 507

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +          +++             E +  ++ +     +   +   LLS+    I+K
Sbjct: 508 IGSEELSHQTPEVENAWYHVLSLDLPAEMSPQELAE-----VEETRNRALLSKDNLRIKK 562

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 563 KVQEASHVGDTDTALEELQRLISQKRRME 591


>gi|225026957|ref|ZP_03716149.1| hypothetical protein EUBHAL_01213 [Eubacterium hallii DSM 3353]
 gi|224955722|gb|EEG36931.1| hypothetical protein EUBHAL_01213 [Eubacterium hallii DSM 3353]
          Length = 502

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 151/483 (31%), Positives = 236/483 (48%), Gaps = 27/483 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I ++     I ++I  YV   +R +N     Y   CPFH+EK+PSF  +  K 
Sbjct: 1   MRYEEELIDEVREKNDIVDVISSYVSLKKRGSN-----YVGLCPFHNEKSPSFSVSRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLI 118
            YYCF C   G+  +FL      SF+E++Q LA  AGV LP  +   E++++   +  L 
Sbjct: 56  MYYCFGCGQGGNVYTFLMEYNRLSFVEALQNLAQRAGVELPEREQTAEERQQADARVTLR 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + + A  +FH+ LK+ R  +   YL  RG+    I  F LGYA   R  L ++LR KGF
Sbjct: 116 DMNKEAAIYFHYLLKSERGTQALSYLKNRGLSDETINHFGLGYADIYRDDLYQYLRSKGF 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           ++ ++ E+ L ++ D    +YD+F NR+IFPI     +VI FGGR +      KYLNS E
Sbjct: 176 TDYQMKESSL-VNIDTVKGNYDKFFNRVIFPIMDMNQRVIGFGGRVM-GDGEPKYLNSRE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TILF KG+NLY    A                S+ IIL EGYMDV+SL QAG  N V+ L
Sbjct: 234 TILFDKGRNLYGLNYAKRS------------RSNAIILCEGYMDVISLHQAGFTNAVAPL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T  Q  LL + +  ++L FD D  G++AA +A+ +       G R   + +   +D
Sbjct: 282 GTAFTPNQAMLLKRYTNEVILSFDSDGAGIKAALRALPI---LRQNGLRGRVLSMKPYKD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD  I+  G  +++K I E+               +   P+ R E    +   +  I++ 
Sbjct: 339 PDELIKAEGAESYQKRIDEAESGRMFELLVLYGQYNQQDPESRTEFLHEVAKKLAQIEEP 398

Query: 419 KLRYYYSQAIRDRL---QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
             R  Y  +  +R    +   +  +  +    +Y + N +++      +R  +   ++  
Sbjct: 399 LERQTYLTSAANRFMIRKNDLENLVNRYGLGYQYEQVNEQYKTAPETEERRQEKKKIRKT 458

Query: 476 LSK 478
             +
Sbjct: 459 SHR 461


>gi|294674654|ref|YP_003575270.1| DNA primase [Prevotella ruminicola 23]
 gi|294473538|gb|ADE82927.1| DNA primase [Prevotella ruminicola 23]
          Length = 643

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 158/670 (23%), Positives = 285/670 (42%), Gaps = 70/670 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  I  +L    I +++G++V   +   N     Y   CPFHD+KTPSF  + +K   
Sbjct: 2   IDRQTIDKILDATNIVDVVGEFVTLRKSGVN-----YKGLCPFHDDKTPSFMVSPTKQIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CFSC   G  ++FL      ++ E+++ LA    + +       + ++++  +  +  +
Sbjct: 57  KCFSCGEGGTAINFLMKHEQITYPEALRWLAKKYNIEIQEKELTEEEKREQSDRESMFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A ++F   L N  D       Y   RGI    +E F LG++   R +L    ++ G+
Sbjct: 117 NEWAMNYFKDVLNNDPDGVAIGRQYFRSRGIRDDIVEKFNLGFSLSKRDALDIAAKKAGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
            EE +I+ GL I        YDR+  R+IFP  +  G+V+AFGGR L    KG   KY+N
Sbjct: 177 QEEFLIKTGLCIK--GEKGVYDRYAGRVIFPWFNVSGKVVAFGGRLLDARTKGVQQKYVN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP++ ++HK + LY  +     + K             + +VEGY DV+++ Q G++NVV
Sbjct: 235 SPDSEIYHKERELYGLYQGKKAIAK----------EDCVYMVEGYTDVIAMHQCGLENVV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL++YQ++LL + +P I+L +DGD+ G+ AA +  D+    L  G +V  +LL  
Sbjct: 285 ANSGTALSKYQIKLLRRFTPNIILLYDGDEAGIHAAMRGTDM---LLAEGMKVKVLLLPD 341

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +    F+  I E      + +K +    + + P +R+E    +   I+ +
Sbjct: 342 GDDPDSFSRKHTAQEFKAYIEEHAEDF-ISFKTKLTVENVSDPVKRSEAIGGIVKSISVV 400

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            D  LR  Y   +  RL    +  +   +G     ++       +  +Q  +Q       
Sbjct: 401 DDNLLRDEYLTQLSRRLGIKEETLLQSMNGMISRDREEKEKEYNREQTQNAIQQEREAQG 460

Query: 476 L---------SKKPSLREAALLLTLINHPAILQEQYQEL--------------------- 505
                     S +    E  L+ T++      +  Y+ L                     
Sbjct: 461 KPMAIGLHTISDQIQQVEDLLIKTIVRDGE--KIIYENLQTEDGQTINLSVAQFISYDMG 518

Query: 506 -ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
              + +      K+   + +   E+ +   E + +   +     +   +       G   
Sbjct: 519 EDGLSFSKPVYNKILQEVVAHCGEEGFKAEEYLTRH-TDYEISSIAASMAVDSYQLGKGF 577

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI---- 620
              E     +R   +  + L  R+  L  + +E+   I +   +G+   T          
Sbjct: 578 QLKEREGG-LRSHVEH-IVLDFRYYCLGAKVKELLASIKK--GEGDVMATLAEYQHVDLI 633

Query: 621 LHEVHIQIHQ 630
             EV  ++ +
Sbjct: 634 YKEVAKKLGR 643


>gi|325268824|ref|ZP_08135449.1| DNA primase [Prevotella multiformis DSM 16608]
 gi|324988796|gb|EGC20754.1| DNA primase [Prevotella multiformis DSM 16608]
          Length = 643

 Score =  336 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 150/666 (22%), Positives = 274/666 (41%), Gaps = 54/666 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  +  ++    I  +I  +V   +  T      Y   CPFHD++TPSF  +  +G Y
Sbjct: 2   IDRPTVDRIMNAANIVEVISDFVSLRKAGT-----SYKGLCPFHDDRTPSFSVSPVRGVY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CFSC   G+ + F+      ++ E+++ LA    + +       + +++E  +  +  +
Sbjct: 57  KCFSCGAAGNVVKFIMEHEQMTYPEALKWLANKYHIEVHERELTTEEKQQENERESMFLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +F   L N  D       Y   RG     I  F+LG+    R++  +   + GF
Sbjct: 117 NEWAVKYFEDILHNDVDGMAVGMQYFRSRGFRDDIIRKFRLGFCLSGRHAFADAALKAGF 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
             + +++ GL      +    DRF  R++FP     G+V AFGGR L    KG S KY+N
Sbjct: 177 QRDFLVKTGLC-FERENGELVDRFNGRVMFPWIGVSGKVTAFGGRLLDARTKGVSQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP+++++HK + LY  F A   + K             + +VEGY DV+S+ Q G++NVV
Sbjct: 236 SPDSVIYHKERELYGIFQAKKAIAKY----------DLVYMVEGYTDVVSMHQCGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ +Q+RLL + +  IVL +DGD  G  AA +  D++L     G  V  +LL  
Sbjct: 286 ANSGTALSVHQIRLLHRFTSNIVLLYDGDAAGQHAALRGTDMLLSE---GMNVKVLLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPD F R +    F + I ++     +       N   +       +   +++     
Sbjct: 343 GKDPDEFARSHSAEDFRRYIEDNQTDFIVFKINVLLNGVTDPVKRSEAVSSIVRSVSVI- 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEH-SGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           KD  LR  Y +   +R     +  + +         ++  R + Q+  + +  Q+     
Sbjct: 402 KDPILRDTYIRECANRTGVSERTLMEQMNRNIYSDREQQTREQQQRAAALQQQQTDGQAS 461

Query: 475 KLSKKPSLREAALLLTLINHPA--ILQEQYQEL-------------------ADIRYDNN 513
               +    E  L+  ++      I ++   E                     ++ + + 
Sbjct: 462 VPVPQVPQVEQMLMQVIVRDGEKIIFRDVKDEASGQLYSLTVAQYIAFDLGSDNLGFSDP 521

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK-QLDRQVRDAGLWSATTEANIV 572
              ++         E+ +   E   Q    +     +K  +DR      L    TE  + 
Sbjct: 522 LYTRMLREAVEHSGEENFRAEEYFMQHADIQIASAAVKLGVDRFQLSESLQVKETEKTLC 581

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           D        +A + R   +S   +E+  ++ Q     E  KT   I  +  +  ++ +  
Sbjct: 582 D---RVVHLIADF-RLDYVSSHLKELNARLLQTKDPEEMTKTMEEIMKMQTLRNKLAKKL 637

Query: 633 SQEAMI 638
             + ++
Sbjct: 638 GSDILV 643


>gi|325853097|ref|ZP_08171246.1| DNA primase [Prevotella denticola CRIS 18C-A]
 gi|325484471|gb|EGC87392.1| DNA primase [Prevotella denticola CRIS 18C-A]
          Length = 644

 Score =  336 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 151/667 (22%), Positives = 275/667 (41%), Gaps = 55/667 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  +  ++    I  +I  +V   +  T      Y   CPFHD++TPSF  +  +G Y
Sbjct: 2   IDRPTVDRIMNAANIVEVISDFVSLRKAGT-----SYKGLCPFHDDRTPSFSVSPVRGVY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CFSC   G+ + F+      ++ E+++ LA    + +       + +++E  +  +  +
Sbjct: 57  KCFSCGAAGNVVKFIMEHEQMTYPEALKWLANKYHIEVHERELTTEEKQQENERESMFLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +F   L N  D       Y   RG     I  F+LG+    R++  +   + GF
Sbjct: 117 NEWAVKYFEDILHNDVDGMAVGMQYFRSRGFRDDIIWKFQLGFCLSGRHAFADAALKAGF 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
             + +++ GL      +    DRF  R++FP     G+V AFGGR L    KG + KY+N
Sbjct: 177 QRDFLVKTGLC-FERENGELVDRFNGRVMFPWIGVSGKVTAFGGRLLDARTKGVTQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP+++++HK + LY  F A   + K             + +VEGY DV+S+ Q G++NVV
Sbjct: 236 SPDSVIYHKERELYGIFQAKKAIAKY----------DLVYMVEGYTDVVSMHQCGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ +Q+RLL + +  IVL +DGD  G  AA +  D++L     G  V  +LL  
Sbjct: 286 ANSGTALSVHQIRLLHRFTSNIVLLYDGDAAGQHAALRGTDMLLSE---GMNVKVLLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPD F R +    F + I ++     +       N   +       +   +++     
Sbjct: 343 GKDPDEFARSHCAEDFRRYIEDNQTDFIVFKINVLLNGVTDPVKRSEAVSSIVRSVSVI- 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSG--YGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           KD  LR  Y +   +R     +  + + +   Y    ++    + Q+    R  Q     
Sbjct: 402 KDPILRDTYIRECANRTGVSERTLMEQMNRNIYSNREQQTREQQQQRAAVIRQQQVEEQA 461

Query: 474 GKLSKKPSLREAALLLTLINHPA--ILQEQYQEL-------------------ADIRYDN 512
               ++ S  E  L+  ++      I ++   E                     ++ + +
Sbjct: 462 TVPVRQVSKVEQMLMQVIVRDGEKIIFRDVKDEESGQLYSLTVAQYIAFDLGSDNLGFSD 521

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK-QLDRQVRDAGLWSATTEANI 571
               ++         E+ +   E   Q    +     +K  +DR      L    TE  +
Sbjct: 522 PLYTRMLREAVEHSGEENFRAEEYFMQHADIQIASAAVKLGVDRFQLSESLQVKETEKTL 581

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            D        +A + R   +S   +E+  ++ Q     E  KT   I  +  +  ++ + 
Sbjct: 582 CD---RVVHLIADF-RLDYVSSHLKELNARLLQTKDPEEMTKTMEEIMKMQTLRNKLAKK 637

Query: 632 ESQEAMI 638
              + ++
Sbjct: 638 LGSDILV 644


>gi|291557422|emb|CBL34539.1| DNA primase, catalytic core [Eubacterium siraeum V10Sc8a]
          Length = 586

 Score =  336 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 140/556 (25%), Positives = 239/556 (42%), Gaps = 25/556 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    DF+ ++     I ++I  YV   +  T     DY   CPFH EKTPS H   +  
Sbjct: 1   MRLSEDFLLNIKESNDIYDVISSYVPLKKSGT-----DYVCNCPFHSEKTPSCHIYMATQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            +YCF C   GD ++F+       ++ESV+ LA  AG+ +P  +     K   +T    +
Sbjct: 56  SFYCFGCGAAGDVINFIRLYEHLDYMESVKFLAQRAGIAMPDEEGDNGIK--RRTRAYEM 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A  FFH  L +   K    YL  RG+  H I  + LGYAPD+  SL++H+   G+S+
Sbjct: 114 NREAGRFFHKYLYSPAGKEGLDYLYGRGLTDHTIRTYGLGYAPDTWDSLKKHMNSLGYSD 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            ++ EA LL     S   +D F+ R++FP    RG ++ F GR +   ++ KYLN+  T 
Sbjct: 174 SEMEEASLLSKSSKSGNYFDFFKYRVMFPFIDVRGNIVGFSGRVIGGDDNRKYLNTKATA 233

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +++K   LY+   A N               S +I+ EG +DV+S+ QAG +N V++ GT
Sbjct: 234 VYNKSTFLYSLNHAKNA------------GESVLIMCEGNLDVISMYQAGFKNAVATCGT 281

Query: 301 ALTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           A+T+   R +      +++L +D D  G +A  +A+++       G   N + +   +DP
Sbjct: 282 AITDSHARNIANLGFRKVILAYDSDAAGQKATARAMNI---LDKVGISANVLTMQGAKDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +I+ +GK AF+ LI  S   +D   K+       + P  ++E        I +I    
Sbjct: 339 DEYIKKFGKEAFQLLIDGSQSGMDYELKKIRSETDLSAPGGKSEYLKKAVGFIANINSPI 398

Query: 420 LRYYYSQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            R  Y   I     + +             R   +   +R               +    
Sbjct: 399 DRAVYISTIAQECDVNRANVDIAVNQIIAKRNKTREKDNRRAILNGSVNRDKINPEASRY 458

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E  ++  L + P  L++   +++   +     ++L+  L +            +
Sbjct: 459 PAETQAERGIIAYLFHSPDALKKITDKISSDDFVTEFNKRLFIDLTAMISCGLSNDVSML 518

Query: 538 HQRLCERGFGELLKQL 553
             R        + K +
Sbjct: 519 ADRYSAEEVASIYKLI 534


>gi|302036355|ref|YP_003796677.1| DNA primase [Candidatus Nitrospira defluvii]
 gi|300604419|emb|CBK40751.1| DNA primase [Candidatus Nitrospira defluvii]
          Length = 614

 Score =  336 bits (860), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 164/635 (25%), Positives = 271/635 (42%), Gaps = 51/635 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D I  +   + I+ ++GQ+V   R   N         CPFH EK+PSF  + S+  +
Sbjct: 6   ISDDVINQIRDRVDIAEIVGQHVALTRTGQNL-----KGLCPFHQEKSPSFTVSSSRQIF 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT-DLIRLI 121
           +CF C   G+  +FL  L G  F E V+ L    GV +P        + + Q   + RL 
Sbjct: 61  HCFGCGAGGNVYTFLMKLTGAGFPEIVRDLGRKVGVDVPESAGGYSSEARTQLGRIERLN 120

Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             A  ++   L  +        YLD RGI  + I  F++GYAP     L + + ++GF+ 
Sbjct: 121 AAAGAYYQRMLLDHTAGAPARAYLDGRGIHHNTIAQFQIGYAPQEWDGLTKAMLKEGFTP 180

Query: 181 EKIIEAGLLIDGDNS-------ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             ++ AGL I  D S       +  YDRFR+R++FPI   R +V+AFGGR L +G   KY
Sbjct: 181 ADLVAAGLSIPRDQSGQQKTAASGHYDRFRSRVMFPIVDLRKRVVAFGGRILGEG-MPKY 239

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET LF KG+ L+    A                   +I+VEGY D ++L QAG+++
Sbjct: 240 LNSPETPLFKKGQTLFALEAAREAA----------GQQHTLIIVEGYFDAVALHQAGIRH 289

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           V ++LGTALT   + ++ + +  +VL FD D  G+RAA + +DL    +  G  V  V L
Sbjct: 290 VAATLGTALTAEHITVIRRFASNVVLLFDPDQAGVRAALRTLDL---FVNSGLSVTVVSL 346

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G+DPD+++R YG   F  L   +  L+D   +         T ++R      +   + 
Sbjct: 347 PEGDDPDTYVRKYGADGFTTLHQAAPSLLDFAVEHSLRTAESGTVEDRIRAVDAVLRILQ 406

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  R    + + +RL    Q+ I  +        +    R    P+          
Sbjct: 407 KSAHPIEREERIRLVAERLGLSQQRLIDRYPTLASEETRRPSPRPAVTPAV--------- 457

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                K +  E  L   L+   ++  E  + L+   +  +  ++L         +     
Sbjct: 458 ASPKPKANPEERDLAHLLVQ-GSLSAEDLRRLSPDAFSASAYRRLIECALQHREQDGRVS 516

Query: 534 PEEIHQRL-CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +   L  ++  G L+ +L           + +E +  DV       L   +R R   
Sbjct: 517 VRGLLDTLINDQECGSLVSEL-----------SMSEQHYDDVPAHIAGCLDTLER-RGRE 564

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           R    + +++     +        L  +++E+ I+
Sbjct: 565 RTMGALIQELKAAERERREADVHRLNRLINEMRIR 599


>gi|270292886|ref|ZP_06199097.1| DNA primase [Streptococcus sp. M143]
 gi|270278865|gb|EFA24711.1| DNA primase [Streptococcus sp. M143]
          Length = 591

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 146/629 (23%), Positives = 265/629 (42%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 8   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G SF+E+VQ L    G+ L +      ++      L  + E 
Sbjct: 63  CFGCGRSGDVFKFIEEYQGVSFMEAVQLLGERVGIQLAMPVQSRPQQASPHQALYDMHEE 122

Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL ERG+    ++ F++G AP  R  L + L  K F E+ 
Sbjct: 123 AARFYHAILMTTKMGEEARAYLYERGLTDDVLKHFQIGLAPAERTYLYQRLADK-FEEKD 181

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--KGESVKYLNSPETI 240
           ++++GL     +    YD F  R+IFP+ + +GQVIAF GR       ++ KY NS  T 
Sbjct: 182 LLDSGLFYLS-DGNQFYDTFFGRIIFPLTNDKGQVIAFSGRIWQEADNQTAKYKNSRSTA 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K           + + L+EG+MDV++  +AG++N V+S+GT
Sbjct: 241 IFNKSYELYHLDKAKKGTGKI----------TELYLMEGFMDVIAAYRAGIENAVASMGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL++  +  L + + +IVL +DGD  G  A  KA++ +         V  V +    DPD
Sbjct: 291 ALSKEHVDHLKRFTKKIVLSYDGDKAGQAATAKALEEL-----KDFSVEVVRVPDAMDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++         L+ ++       +  + +  + +    + E    +   I   K    
Sbjct: 346 EYLQKNSAEDLAYLLTKTRISPIEFFIHQLKPENSDNLQAQIEFIEKIAPLIAKEKSITA 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L     + + +     R  ++  R ++++ P+      SL   +     
Sbjct: 406 QNSYIHILADNLPSFDYQQVEQIVNESRIVQRQERVKEEQPPA----AISLPVTRQLTAV 461

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  +  +P +L +  +   D  +D  E Q L+  L              +   
Sbjct: 462 MRAEAHLLYRMAENPVVLNDY-RLREDFFFDTPEFQILYELL-------------SVEGE 507

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +          +++             E +  ++ +     +   +   LLS+    I+K
Sbjct: 508 IGSEELSHQTPEVENAWYHVLSLDLPAEMSPQELAE-----VEATRNRALLSKDNLRIKK 562

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 563 KVQEASHVGDTDTALEELQRLISQKRRME 591


>gi|126666519|ref|ZP_01737497.1| DNA primase (bacterial type) [Marinobacter sp. ELB17]
 gi|126628907|gb|EAZ99526.1| DNA primase (bacterial type) [Marinobacter sp. ELB17]
          Length = 578

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 174/600 (29%), Positives = 276/600 (46%), Gaps = 40/600 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ F++DLL  I ++ LIG  V   +   N     Y ACCPFHDEKTPSF+    KGFY
Sbjct: 5   IPQRFVEDLLDRIDLAELIGSRVTLKKAGAN-----YKACCPFHDEKTPSFNVRPDKGFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD +SFL    G  F E+V+ LA  AG+ +P  D   +++ +    L   ++
Sbjct: 60  HCFGCGAHGDAISFLREFEGLGFTEAVEDLARRAGMEVPY-DQAAKQEMQQTRTLTEALD 118

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A+ F+  +L +        YL +RG+D   I+ ++LG+AP    +L +           
Sbjct: 119 FASLFYQQALSSEAGAFARDYLQQRGLDPAIIQQYQLGFAPAGGTALCDAAGTSFKEPLL 178

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
             +       D      D FRNR++FPIR++RG+ IAFGGRTL   +  KY+NSPE+ +F
Sbjct: 179 ETKT----VSDQYGRPRDLFRNRVMFPIRNTRGKTIAFGGRTL-GDDKAKYINSPESDVF 233

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           HK + +Y  + A   L++             +++VEGYMDV++L Q G++  V++LGTA 
Sbjct: 234 HKSREIYGLYEARQNLKQL----------DKLLVVEGYMDVIALAQHGIKFAVATLGTAT 283

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
            +  L  L +    IV CFDGD  G  AA +A++  L  +  G  + F+++ +GEDPD+ 
Sbjct: 284 NQDNLSALMRQVRHIVFCFDGDTAGYHAADRALENALELMADGLHLQFLMMPQGEDPDTL 343

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           IR  G  AF K I  ++PL   L+ R+++      P+ R EL    +  +N +    LR 
Sbjct: 344 IRKEGAEAFSKRIEAAIPLSRYLFDRQSDGLDLQLPEHRGELRARAEPMLNKMPKCTLRD 403

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                +        Q         G           ++    +L + SL           
Sbjct: 404 AMWHEMLRLCNGRDQWQKKPWQERGGNKGWQRERIQEQRIDVKLSKDSL----------- 452

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
               L L L   P +  E  +  A       +     S++    +  +  L   +   + 
Sbjct: 453 ----LCLALTEAPDLAAEVAEA-ARGSRQFIQAAAFASWILERKLANQPALISALATDVQ 507

Query: 543 ERG-FGELLKQLDRQ-VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIE 599
            R  F  L   ++    R+  L +A    +  +     Q+  AL + F  LS  ++ E+ 
Sbjct: 508 ARDRFFHLFDGIEHIPAREHTLEAARELLSPDEEASRQQRLAALLRNFVNLSPEERSELR 567


>gi|120437120|ref|YP_862806.1| DNA primase [Gramella forsetii KT0803]
 gi|117579270|emb|CAL67739.1| DNA primase [Gramella forsetii KT0803]
          Length = 652

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 162/664 (24%), Positives = 267/664 (40%), Gaps = 64/664 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  I ++     +  +IG +V   R  +N          PF DE++PSF  +  K  +
Sbjct: 2   ISRTTIDNVFETARVEEVIGDFVQLKRSGSNL-----KGLSPFTDERSPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA   G+ +   +   E+KE    +  +  +
Sbjct: 57  KDFSSGKGGNVVAFLMEHEHFNYPEAIKYLAKKYGIEIEETEQSDEQKELANERESMYLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  FF   +    + +     Y  ERG  +  I+ F LGY+PD      +     G+
Sbjct: 117 SEYANKFFQKKMHETDEGQAIGLSYFKERGFSAETIKKFDLGYSPDDWEIFTKTALDDGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
             E + + GL I        +DRF+ R++FPI S  G+V+ FGGR LS  +   KYLNSP
Sbjct: 177 KLEFLEKTGLSIV--KENKRFDRFKGRVMFPIHSMSGRVLGFGGRILSNTKKAAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  + A   + K               LVEGY DV+   Q+G++N VSS
Sbjct: 235 ESDIYHKSKVLYGIYYAKQAIAK----------EDNCYLVEGYTDVIQFHQSGIENTVSS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ +L+  I + FDGD  G RA+ + IDL    L  G  V       GE
Sbjct: 285 SGTALTPEQIRLINRLTKNITVLFDGDAAGTRASLRGIDL---ILEQGMNVKVCPFPEGE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R   +    + + E+             + S N P ++A L   + N I  I D
Sbjct: 342 DPDSFARANNEDELREFLEENSYDFITYKASLLMDESKNDPVKKAGLIRDMVNSIAKIPD 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R  Y Q    R+  + +  +             +    +K   + + + S  K K+ 
Sbjct: 402 NIQREVYLQECS-RIMDISEDVLYATLAQIEKKDNPSSGGSKKRKMEVVKEESTPKVKI- 459

Query: 478 KKPSLREAALLLTLINHPAILQEQYQEL-------------------------------A 506
               + E  ++  L+ +    +E    L                                
Sbjct: 460 DHLYILERNIIKILLLYGNKEEEFEDLLLKQNEDTGELELEPEKQSSKVFEKIYLDLQED 519

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           +I + N + +KL+  L +    +     E I   L      E+   L ++ +        
Sbjct: 520 EIAFSNEDFRKLYQLLITKLNSEDEVAIENIINDLETSQSKEVTDILMQEEQYELHNWDR 579

Query: 567 TEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL---ISI 620
            +  + +  Q   Q +    L  R  L+ ++  E+ + I     + E           + 
Sbjct: 580 HDIPVKNKEQTVNQFVSQTILNLRRHLIDKKLNELLEDIRIAETEDERTDIKNEVMGFNK 639

Query: 621 LHEV 624
           L  +
Sbjct: 640 LRTL 643


>gi|325983603|ref|YP_004296005.1| DNA primase [Nitrosomonas sp. AL212]
 gi|325533122|gb|ADZ27843.1| DNA primase [Nitrosomonas sp. AL212]
          Length = 599

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 181/652 (27%), Positives = 304/652 (46%), Gaps = 81/652 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I + I ++V   +   N     Y ACCPFH+EKTPSF  + SK FY
Sbjct: 2   IPQTFIHDLLNRADIVDTIDRHVSLKKAGAN-----YVACCPFHNEKTPSFTVSQSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-------- 114
           +CF C   G  + FL    G SF+E+V+ LAA  G+ +P+          ++        
Sbjct: 57  HCFGCGAHGSAIHFLMEYSGLSFVEAVRDLAASVGMQVPIQQAGTPANSAVRNDSEYFAS 116

Query: 115 -----------TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAP 163
                       DL+ ++++AT F+   LKN+  ++   YL +RG    +   F +GYAP
Sbjct: 117 DHYTNDPAISSQDLLNVMQIATRFYREQLKNS--EKAIAYLKKRGFSGESAARFAIGYAP 174

Query: 164 DSRYSLREHLR--QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFG 221
               +L+      +   +   +++AGL+I G +    YDRFRNR++FPI + +GQ+I FG
Sbjct: 175 AGWQNLQTVFSDYKSEKTRNLLVQAGLVIVG-DEDKQYDRFRNRIMFPILNQKGQIIGFG 233

Query: 222 GRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM 281
           GR L   E  KYLNSPETILF KG+ LYN F A   ++            +  ++VEGYM
Sbjct: 234 GRVL-DDEEPKYLNSPETILFEKGRELYNLFSARRAIR----------EVNCALVVEGYM 282

Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
           DV+SL Q G+   V+SLGT+ T + L+ L + + +I+ CFDGD  G +AA++A++  L  
Sbjct: 283 DVISLAQYGIDYTVASLGTSTTSFHLQKLLRQTDQIIFCFDGDKAGRKAAWRALENSLAL 342

Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER 401
           L  G  ++F+ L  G DPDS+I+  G+ +FE+L+ +S+PL + L+K         T + R
Sbjct: 343 LSDGKLLSFLFLPEGTDPDSYIKKNGRKSFEQLLKQSIPLSEFLFKELCSRIDIQTSEGR 402

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
           A+L    K  +  +    L     + + +       +   +        K   R    K 
Sbjct: 403 AKLINDAKPLLQQVTAAALSLMLLKRLAELSNIDQSELEEKLQIKPSSKKYVTRKAPPKQ 462

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWS 520
            +                       L++ L+++P  +    +   ++ + ++ E+  L S
Sbjct: 463 LATPY------------------RRLIMMLLHNPNYINRLNRNWFSEEKENSKEITALKS 504

Query: 521 FLFSDFVEQKYFLPEEI-----HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
            L   F +  + +  E+        L +     LL+ ++ +                D  
Sbjct: 505 -LIELFDKNPHLINSELPTSTIFAYLQDSAHRTLLENIESETLKW-----------DDAI 552

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
               + L   ++ +   R     +K+I ++ +K  +  T      L ++ ++
Sbjct: 553 DLEAEFLGTLEKLQQAQR-----KKRITELYSKPLSMLTNDEKRELQQLAMR 599


>gi|298252573|ref|ZP_06976367.1| DNA primase [Gardnerella vaginalis 5-1]
 gi|297532937|gb|EFH71821.1| DNA primase [Gardnerella vaginalis 5-1]
          Length = 691

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 138/707 (19%), Positives = 248/707 (35%), Gaps = 97/707 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I+ +     + +++   V           G +   CPFHDEKTPSF    S G +
Sbjct: 5   IVKEDIERVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTPSFSVRPSLGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLIR 119
           +CF C   GD   ++       F E+V+ LA    + +      +   + +   +  L+ 
Sbjct: 61  HCFGCGAGGDVFKYVEQKENIDFREAVEFLADRYHIEMHYKQEQNNDSQARGSKRARLLE 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             E A  FF  +L           L  R         F  GYAP    +L  +L  KGF+
Sbjct: 121 ANEEAQKFFVSNLGTKEAAPARELLAGRNFTPQQSARFSCGYAPKGWDNLVRYLANKGFT 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            +++++AGL   G      YD FR RL +PIR S G+ + FG R L   +S+  KY+N+P
Sbjct: 181 RQELLDAGLARLGQR--GIYDYFRGRLTWPIRDSTGRTLGFGARKLYDDDSISAKYINTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T L+ K + LY    A   + K             +++VEGY DV++   AG+   V++
Sbjct: 239 DTALYRKTQVLYGIDLAKANIVKK----------RQVVIVEGYTDVMACHLAGIDTAVAT 288

Query: 298 LGTALTEYQLRLLWK----------------------LSPRIVLCFDGDDPGLRAAYKAI 335
            GTA      +++ +                      +S RIV  FDGD  G +AA  A 
Sbjct: 289 CGTAFGVEHAKIVRRLIADDSLGAIQLVGPLKVDGQSVSSRIVFTFDGDAAGQKAALHAF 348

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
            L    L    +    +     DP       G  A   L+  + PL D +          
Sbjct: 349 GLDSAFLT---QTFVAVADNNLDPCDLRIQRGDEAVRSLVAHASPLYDFVIDTVINRFET 405

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---- 451
           +    +      +   I  I+D+ L   Y +     +         E     R  K    
Sbjct: 406 SYTTGQMGAIKAVAPLIAQIRDRSLLDLYMRKAVRSIGVDLAVMRNEVESARRRLKVRDD 465

Query: 452 --------------------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
                               +NA  +  +    +    +    ++     + E   +  L
Sbjct: 466 DAYAQKHNVIPPFGQQIHDDRNAGFKASRMEIIKSSAKNQHYYRVDDAVFMCEQQFMALL 525

Query: 492 INHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           +  P    E  + +L    +     + L+    +        + + +   +  +  G LL
Sbjct: 526 LQVPLAFDEKLFAQLTLNNFITPVFRTLFQAFVAAGGLPVGNVSQGLWLHMMTKAAGPLL 585

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQAL---------------------ALYKRFR 589
           + +  ++    L   +    + D      Q +                      L  R  
Sbjct: 586 ESVITELSVMPLPLPSPADTLEDTGNRQNQQVSNGSPSDFLRKATSAESKYANELLIRLL 645

Query: 590 LL--SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +   R+      ++A++    + ++   L+  +  +      ++SQ
Sbjct: 646 DIGYMRRIGAARVRMAKLK---DGQEKLELLGKITSMEAARKNLQSQ 689


>gi|262199545|ref|YP_003270754.1| DNA primase [Haliangium ochraceum DSM 14365]
 gi|262082892|gb|ACY18861.1| DNA primase [Haliangium ochraceum DSM 14365]
          Length = 605

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 161/639 (25%), Positives = 268/639 (41%), Gaps = 53/639 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P D + ++     I  +IG +V   +   N     +   CPFH EKTPSF+ N  K F+
Sbjct: 4   IPEDTVHEIRERADIVAVIGDHVSLRKAGRN-----HKGLCPFHHEKTPSFNVNGDKRFF 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---EKKEKIQTDLIR 119
           YCF C  KGD  +F+    G SF E+ + LA+  G+ +P   P+     ++   ++ ++ 
Sbjct: 59  YCFGCQKKGDVFTFVMEYEGKSFTEAAETLASRFGISIPESRPESPALRRQRGERSRMLE 118

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           +  +AT+FF   L++  R      YL ERGID      F+LGYAPD    L E L +K  
Sbjct: 119 INALATEFFAAVLRDPERGAPGRAYLAERGIDEATANSFQLGYAPDQWRELGEFLERKRV 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-------- 230
             E   + GLL+    +   YDRFR+RL+ P+    G+V  F GR L   E         
Sbjct: 179 PAELAAKVGLLVKQPRAGGYYDRFRHRLMCPVVMPGGEVAGFSGRLLPSPEQDEDDERKG 238

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KY+NSPE+ ++ K + L+    A +  ++  R           +LVEG  DV+ + Q G
Sbjct: 239 AKYINSPESPVYKKSRLLFGLHLARDAFREKRRA----------VLVEGNFDVIHMHQHG 288

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
               V+ LGTALT+ Q+  L +L+  +VL +DGD  G  A  KA++     +    +V  
Sbjct: 289 FAEAVAPLGTALTDEQIGQLRRLADEVVLLYDGDKAGRAATLKALE---ALVASDTKVRI 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
             L  G DPDS +         + +  + P ++  +  +   RS  + D R+E       
Sbjct: 346 AALPAGADPDSMLLTGRVQELAESLTRAQPAIEY-FVHDVWTRSARSADGRSEALDEAAR 404

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR--LMQ 468
            + H+ +   R      I + +    +          +   +  + R +    +R     
Sbjct: 405 LLVHVTNPTKRDLIIDTIANGMSVSPELVRRAMQRGNQRGDQRNQGRHRDADERRFEQPP 464

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                    + P   E  LL  L +HP +L E  ++   + +  +   +L    F+    
Sbjct: 465 PPQPPAAPVQPPPREELNLLAILADHPDLL-EVAEDKEVVSFLTD--GRLRDIYFAARQG 521

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                             G L+ +            A T A++ D      +AL   +  
Sbjct: 522 SSMLSSA-------PEDIGPLIAK---------YVLAGTYASVEDPAHCLDEALQRLRAG 565

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           R  +R  ++++KQ      +G+      L+  + +   Q
Sbjct: 566 RSRTR-LQQLQKQAYDARRRGDVALERRLVGEILKTRRQ 603


>gi|331266529|ref|YP_004326159.1| DNA primase [Streptococcus oralis Uo5]
 gi|326683201|emb|CBZ00819.1| DNA primase [Streptococcus oralis Uo5]
          Length = 586

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 146/629 (23%), Positives = 265/629 (42%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G SF+E+VQ L    G+ L +      ++      L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVSFMEAVQLLGERVGIQLAMPVQSRSQQASPHQALYDMHEE 117

Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F++G AP  R  L + L  K F E+ 
Sbjct: 118 AARFYHAILMTTKMGEEARAYLYKRGLTDDVLKHFQIGLAPAERTYLYQRLADK-FEEKD 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     +    YD F  R+IFP+ + +GQVIAF GR   + +S   KY NS  T 
Sbjct: 177 LLDSGLFYLS-DGNQFYDTFFGRIIFPLTNDKGQVIAFSGRIWQETDSQTAKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K           + + L+EG+MDV++  +AG++N V+S+GT
Sbjct: 236 IFNKSYELYHLDKAKKGTGKI----------TELYLMEGFMDVIAAYRAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL++  +  L + + +IVL +DGD  G  A  KA++ +         V  V +    DPD
Sbjct: 286 ALSKEHVDHLKRFTKKIVLSYDGDKAGQAATAKALEEL-----KDFSVEVVRVPDAMDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++         L+ ++       +  + +  + +    + E    +   I   K    
Sbjct: 341 EYLQKNSAEDLAYLLTKTRISPIEFYIHQLKPENSDNLQAQIEFIEKIAPLIAKEKSITA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L     + + +     R  ++  R ++++ P+      SL   +     
Sbjct: 401 QNSYIHILADNLPSFDYQQVEQIVNESRIVQRQERVKEEQPPA----AISLPVTRQLTAV 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  +  +P +L +  +   D  +D  E Q L+  L                  
Sbjct: 457 MRAEAHLLYRMAENPVVLNDY-RLREDFFFDTPEFQILYELLSEQGE------------- 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +          +++             E +  ++ +     +   +   LLS+    I+K
Sbjct: 503 IASEELSHQTPEVENAWYHVLSLDLPVEMSPQELAE-----VEATRNRALLSKDNLRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELQRLISQKRRME 586


>gi|296136131|ref|YP_003643373.1| DNA primase [Thiomonas intermedia K12]
 gi|295796253|gb|ADG31043.1| DNA primase [Thiomonas intermedia K12]
          Length = 624

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 178/661 (26%), Positives = 277/661 (41%), Gaps = 78/661 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI+DLL    I  ++GQYV+  +  TN     Y   CPFH EKTPSF  + SK F
Sbjct: 4   RIPPGFIQDLLARADIVEVVGQYVELKKTGTN-----YKGLCPFHGEKTPSFTVSASKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD------PKIEKKEKIQT 115
           Y+CF C   G  + FL    G  F+++V+ LA   G+ +P  D       +++++  +Q 
Sbjct: 59  YHCFGCGAHGTAIGFLMEHAGMGFVDAVKELAGRYGMTVPEPDLDPQQLRQLQQQRSLQA 118

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L+  ++ A  F+ H L+    +R   YL  RG+     + F LGYAPD    L      
Sbjct: 119 TLVDALQTADGFYQHRLR--HSERAKNYLIARGLQGQVAKKFGLGYAPDDWQPLAGAFAN 176

Query: 176 KGFSEEKIIEAGLLID------------GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR 223
                       +  D              ++   YDR R+R+ FPIR+ RG+VI FGGR
Sbjct: 177 YNADALVQSGLVVARDAAGDTLDPQAESFASAQRRYDRLRDRITFPIRNLRGEVIGFGGR 236

Query: 224 TLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV 283
            + +GE  KYLNSPET +FHKG+ LY  F A + + +          + + ++VEGYMDV
Sbjct: 237 IIDQGEP-KYLNSPETAVFHKGEELYGLFEARSAISR----------AGYALVVEGYMDV 285

Query: 284 LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343
           ++L Q GV+  V++LGTA T  QL+ L++ + ++V  FDGD  G RAA +A++  L  L 
Sbjct: 286 VALAQFGVEQAVATLGTACTAQQLQKLFRHTGQVVFSFDGDTAGRRAARRAMEQALPLLS 345

Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
               V F+ L    DPDS++R  G  AFE+ I  + PL + L+    +  +  T + RA+
Sbjct: 346 DTRVVKFLFLPAEHDPDSYVREKGAEAFEREIGRAQPLSEFLFSSLFDGVAMTTAEGRAQ 405

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
                   ++ I    L       +  RL+    +                R        
Sbjct: 406 AIHEAGPLLSQITAPALLGQLVADLARRLEMPATELREVL-----------RLSSPSRKP 454

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPA----------------ILQEQYQELAD 507
               +S   +G  +          L      P                        + A 
Sbjct: 455 SAPAESFGTRGMKTAPRVRGGREALRAFAAVPKDPLRQLLPLLLSQPELWWSINPAQHAL 514

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
           +  +   LQ L   L S   +Q       + + L   G                + + + 
Sbjct: 515 LSLEPGPLQGLVLTLESILEDQPELSAAALWEALRAAGHA-----------PEEMLAESP 563

Query: 568 EANIVDVRQGYQQALALYKRFR--LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           +   +D     Q  LA+  R     L R+++E+      + A  +  +   L   L E+ 
Sbjct: 564 DPLELDEAAAKQDLLAILSRLERAALKRRQDELVA--GGLVADADRTEYRSLALRLKEID 621

Query: 626 I 626
            
Sbjct: 622 Q 622


>gi|212716822|ref|ZP_03324950.1| hypothetical protein BIFCAT_01761 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660107|gb|EEB20682.1| hypothetical protein BIFCAT_01761 [Bifidobacterium catenulatum DSM
           16992]
          Length = 690

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 141/703 (20%), Positives = 253/703 (35%), Gaps = 94/703 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I+ +     + +++   V           G Y   CPFHDEKTPSF    + G +
Sbjct: 2   ILKEDIEKVRATADLYDIVSATVSLKPSG----TGAYVGLCPFHDEKTPSFSVRPALGVW 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
           +CF C + GD   ++       F ++V+ LA    + L       +K+     +  L+  
Sbjct: 58  HCFGCGLGGDVFGYVEHQENVDFRDAVELLADKYHIELHYDQSNAKKEHTGSKRARLLEA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A +FF   L           LD R       + F  GYAP    +L  +L  KGF++
Sbjct: 118 NEAAQEFFVSQLMTKDALAARKLLDGRNFSQADCQRFGCGYAPQGWDNLVRYLAGKGFTQ 177

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238
           +++++AGL          YD FR R+ +PIR S G+ + FG R L + +S+  KY+N+P+
Sbjct: 178 QEMLDAGLARQ--GQHGVYDYFRGRVTWPIRDSTGRALGFGARKLYEDDSIGAKYINTPD 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A   + K             +++VEGY DV+++  AGV   +++ 
Sbjct: 236 TALYRKNQVLYGIDMAKAAIVKK----------RQVVIVEGYTDVMAMHLAGVDTAIATC 285

Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336
           GTA      +++ +L                        RIV  FDGD  G +AA  A  
Sbjct: 286 GTAFGAEHAKIVRRLIADDSLGAVQLIGPLKVDGQQLSSRIVFTFDGDAAGQKAAIHAFG 345

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
           L         +    +     DP       G  A   LI  + PL D + K         
Sbjct: 346 LDAAFST---QAFVAVADDNLDPCDLRIKRGNEAVRALIANAEPLYDFVIKTAIGRFDTT 402

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------- 449
               +      +   I  I+D+ L   YS+    ++         E     R        
Sbjct: 403 YTTGQMGAVKAVAPLIAQIRDRSLLDLYSRKAVRQIGVDLDIMQREVRDARRKLNVRDED 462

Query: 450 ----WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----------------EAALL 488
                ++ A +     P      +        K    R                 E   +
Sbjct: 463 AYAPKRRFAANAAAAEPRMEQGVNPYANPSARKALEHRDAAEQSYYRIDDAVFICEQQFM 522

Query: 489 LTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
            TLI  P  +    +  L    +     + L+  + +         P+ +      +  G
Sbjct: 523 ATLIQVPLAVDPTLFASLTLSSFMTPVFRTLFQAIAAAGGLPSTDTPQGLWMHNLTKAGG 582

Query: 548 ELLKQLDRQVRDAGLWSATTEANIV-----------------DVRQGYQQALALYKRFRL 590
            +L+ +  ++    L    ++A+                   D  + Y   L +      
Sbjct: 583 PMLESVINELAVMQLPLPPSDADTERASQQSQEINVQLRKPTDDERRYASELIIRLLDTG 642

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           + R+    ++++AQ+    +  +   L+  + ++      +++
Sbjct: 643 IMRRIGADKRRMAQLP---DGAEKIELLGQITKLETLRKDLQA 682


>gi|313896934|ref|ZP_07830481.1| DNA primase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974381|gb|EFR39849.1| DNA primase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 594

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 159/636 (25%), Positives = 267/636 (41%), Gaps = 47/636 (7%)

Query: 1   MNYP--RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M  P    F++ +     I  ++  YV   R+      G YW CCPFH EKTPSF    +
Sbjct: 1   MKDPRMEAFVQQVRAATDILAVVQSYVPLRRKG-----GRYWGCCPFHSEKTPSFSVVPA 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--D 116
           +GF+YCF CH  GD   F+S +   +  E+++R A   G+P+P       ++ +++   D
Sbjct: 56  EGFFYCFGCHAGGDAFKFISLMEHITPFEAIKRQAEQLGIPVPERKRDAREEARLRALDD 115

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L R+  +A DFFH+ L           YL  RG+    IE + +G+AP +   L +  ++
Sbjct: 116 LRRVNALARDFFHNCLTMTRYGAPGKAYLAGRGMTEETIERWGIGFAPGAWSKLADAFQK 175

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G  E+ ++EAGL    + S   YDRFRNR++ PI   RG+++ FGGR L    + KYLN
Sbjct: 176 RGIPEKLLLEAGLCSARERSGGIYDRFRNRVMIPIADERGRIVGFGGRVL-GDGTPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           + ET +F+K K L+    A   +              + ++VEGYMD +++ +AGV NVV
Sbjct: 235 TAETPVFNKRKLLFGLDRAHRAIA----------HEGYAVVVEGYMDAIAVAEAGVANVV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA TE    LL + +PRIV C+D D  G  A  +A+  V         +  +LL  
Sbjct: 285 ATLGTAFTEDHAALLLRRAPRIVFCYDSDAAGQEATLRALTAVRGRAA---ELRVLLLPD 341

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPD +IR +G  AF  LI  +LP+ +    R    R     + +      +   +  +
Sbjct: 342 GKDPDEYIRTHGADAFRALIDAALPVPEYRL-RHIAARMAPGAEGQRAALREMLPVLAEL 400

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            D   R  Y +     L               R+                 +    V+ +
Sbjct: 401 -DDVTRPAYVRRTAAELFLDEGVIGDALR---RFRMHGGTEEPAPRAQSGAVPQRPVRRE 456

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                      LL  +      L E    +    + +     +                 
Sbjct: 457 RGTAAERAGRELLAAVWRDVTTLAEIDAAVPLTEFPDAFFGDILRAAAEHTAAGGALD-A 515

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +    L       + + L  + R                 + +Q AL  + R   L+ + 
Sbjct: 516 DFIAELPAAAGAAISRALVEEGRS---------------EESFQDALRTFHRMH-LTARL 559

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
               ++  ++  +G+      L + + ++  ++  +
Sbjct: 560 ALHTRRAEEMMQEGKQAYIDEL-NEVKKIQDELSAL 594


>gi|325286905|ref|YP_004262695.1| DNA primase [Cellulophaga lytica DSM 7489]
 gi|324322359|gb|ADY29824.1| DNA primase [Cellulophaga lytica DSM 7489]
          Length = 657

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 153/661 (23%), Positives = 265/661 (40%), Gaps = 60/661 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +     +  +IG +V   +  TN     +    PF DE++PSF  +  K  +
Sbjct: 2   ISKSTIDQVYETARLEEVIGDFVQLKKSGTN-----FKGLSPFTDERSPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA    + +   +   E+KE+   +  +  +
Sbjct: 57  KDFSSGKGGNVVAFLMEHEHFTYPEAIKYLAKKYNIEIEETERTDEQKEQANEKESMYLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +F   L      +     Y  ERG     I+ F LGY  D   S       KG+
Sbjct: 117 SEYAQKYFSEVLWERELGKAIGLSYFKERGFTDETIKKFSLGYCLDQWDSFTNTALDKGY 176

Query: 179 SEEKIIEAGLLI---DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYL 234
             E + + GL I           +DRF+ R++FPI+S  G+V+ FGGR L+  +   KYL
Sbjct: 177 KLEYLEKTGLTIVKKQEGQEVRKFDRFKGRVMFPIQSMSGRVLGFGGRILTNDKKAAKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPE+ ++HK K LY  + A   + K               LVEGY DV+   Q G+ NV
Sbjct: 237 NSPESDIYHKSKVLYGIYHAKQAIAK----------EDNCYLVEGYTDVIQFHQRGIHNV 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S GTALT  Q+RL+ +L+  I + FDGD  GLRA+ + IDL    L  G  V      
Sbjct: 287 VASSGTALTPDQIRLVNRLTKNITVLFDGDAAGLRASLRGIDL---ILEQGMNVRVCTFP 343

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            GEDPDSF +        + +  +               + N P ++AE    + N I+ 
Sbjct: 344 EGEDPDSFSKNNSLEEVHQYLESNSKDFIQFKASLLIKETANDPIKKAETVRDIVNSISK 403

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I D+  +  Y Q     +           +  G+    +   + ++      +  + V  
Sbjct: 404 IPDRIKKEIYIQECAQLMNISESVLFNTLAQIGKKEIADEVKKQKEEQKPFQVVKNKVVQ 463

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQEL----------------------------- 505
           +      + E  ++  L+ +    Q+    L                             
Sbjct: 464 EKLDVQYVLEKKIIELLLLYGDTTQQFDDLLLKEDDKGDLILEKETVEARVFEKIYLDLQ 523

Query: 506 -ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
             +I   N + + ++  L  D  E+++F   +    L +    E+   L  + +      
Sbjct: 524 EDEIELTNAKFRDIYYKLIEDLNEKEHFEANKFIGGLDQDLVSEISSILMEEEKYILHEW 583

Query: 565 ATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
              E    +      Q +    L  R  L+ ++  E++++  Q  +   +E    +++ L
Sbjct: 584 ERKEIYPKEKSVSIGQLVSETILTLRCYLIKKRIGELQEK-TQDPSLDNSEILQEIMNYL 642

Query: 622 H 622
           +
Sbjct: 643 N 643


>gi|209517799|ref|ZP_03266634.1| DNA primase [Burkholderia sp. H160]
 gi|209501745|gb|EEA01766.1| DNA primase [Burkholderia sp. H160]
          Length = 623

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 167/654 (25%), Positives = 280/654 (42%), Gaps = 57/654 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPPSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP------------KIEKK 110
           +CF C   G  + FL   +G SF E+V  LA   G+ +P                     
Sbjct: 57  HCFGCGAHGTAIGFLMEHVGASFPEAVNELAQSVGLTVPHEPSPGYGGGASAGSYAPAAS 116

Query: 111 EKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY--- 167
           + + T L  L++ A D++   L+ A       YL +RG+       F LGYAPD      
Sbjct: 117 KAVTTALSDLMQTACDYYRKQLRGAPGA--IQYLKKRGLTGEIAARFGLGYAPDGWQNLE 174

Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
           +     R     E  ++      D       YDRFR R++FPIR+ +GQVI FGGR L  
Sbjct: 175 AAFPDYRDDALVEAGLVIVSEKSDAQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVLDG 234

Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
           GE  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L 
Sbjct: 235 GEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQHYVLVVEGYMDVVALA 283

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           Q G QN V++LGTA T   ++ L + +  ++  FDGD  G RAA +A+D  L H      
Sbjct: 284 QLGFQNAVATLGTACTPIHVQKLMRQTDTVIFSFDGDAAGRRAARRALDACLPHAADNRT 343

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
           + F+ L    DPDS++R +G  AF + +  ++PL   +       +  + P+ +A     
Sbjct: 344 IRFLFLPTEHDPDSYVREFGTEAFAEQVERAMPLSQFMLNEVLTGKELDQPEGKARALFD 403

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
            K  +  +    LR        DRL   F +         R                   
Sbjct: 404 AKPLLQALPANALRAQIMHMFADRLDVPFSEVAALCEVDARIA---------------AA 448

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
                  K  +  +  E   L  L+ +P  +    +E  +         +L++ + +   
Sbjct: 449 AREAPARKDRRSVTGIEEKTLRNLVMYPRTVAMLDEEAEEALLTVTRHAELFAEVATHAR 508

Query: 528 EQKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQ 580
                   ++   L   G     F E+ +++     +    L     +A +++ R+  ++
Sbjct: 509 ALGDSAAFQLLSDLLRNGANAPTFEEIFRKILDYDENVRDLLLKDPHDAAVIEERREQER 568

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +    +  +L  + +    ++ Q++ +     T    +   E++ +   ++ Q
Sbjct: 569 IVGEELKAAILKMRYDAYCDRLDQLSRQSRH--TPEEFAEFTELNRKRADMKRQ 620


>gi|312889927|ref|ZP_07749471.1| DNA primase [Mucilaginibacter paludis DSM 18603]
 gi|311297459|gb|EFQ74584.1| DNA primase [Mucilaginibacter paludis DSM 18603]
          Length = 648

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 154/656 (23%), Positives = 278/656 (42%), Gaps = 49/656 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  ++    I  +IG++V   +R  N     Y    PF +E+TPSF  + +KG +
Sbjct: 2   ITKPTIDRIMEATDIVEVIGEFVVLKKRGAN-----YIGLSPFANERTPSFTVSPAKGIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRL 120
             FS  + G  ++FL      S+ E+++ LA   G+ +      P+  ++E  +  L+ +
Sbjct: 57  KDFSSGIGGSAVTFLMEHEKISYPEALKWLAKKYGIEVEELNDKPENREEENHRESLLIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A  FF  SL      +     Y  ERG     I+ F+LGY+PD   +      + G+
Sbjct: 117 TGYAAKFFQQSLWETDAGKSIALSYFKERGFRDEIIKKFELGYSPDQWEAFTSQALKDGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
            ++ + E GL +  DN  T YDR+R R++FPI +  G++IAFGGRTL   ++  KY+NSP
Sbjct: 177 QQQFLEETGLSVKRDNG-TLYDRYRGRVMFPIHNFTGRIIAFGGRTLKSDKNVPKYVNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK   LY    A   ++                LVEGY DV+S+ Q+G++NVV+S
Sbjct: 236 ESEIYHKSNVLYGLNFAKKAIR----------EEDNCYLVEGYADVISVHQSGIENVVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GT+LT  Q+RL+ +L+  I + +DGD  G++A+ + +D+    L  G  V  V    G 
Sbjct: 286 SGTSLTVEQIRLIGRLTKNITILYDGDPAGIKASLRGLDM---ILEEGLNVKVVSFPDGH 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS++R  G T F+  + ++     +         + N P  +AE+   +   I  I D
Sbjct: 343 DPDSYVRLLGSTGFKNYVNQNKKDFILYKTNILLKEAGNDPIRKAEVIREIVESIAKIPD 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN----------ARHRDQKGPSQRLM 467
                 + +     LQ   +   TE +   +   K           A+      P   L 
Sbjct: 403 SIKAAVFIRECSTLLQIEERSLNTELNKIRQAKHKKDYQQQHHQQQAKPDWADLPPDDLF 462

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQE------------QYQELADIRYDNNEL 515
               ++   S+    +E  ++  LI +   +                 EL+D+ ++    
Sbjct: 463 VDEKIERVSSETGETQEKEIVRLLIMYGNRIINWDGIANTYIGPFIIAELSDVEFETPLY 522

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           +   +    +  +              ++     +  L  Q   +  W    +   VD  
Sbjct: 523 KHFVAIYHQELEKGNLPEEVFYINHADKQITDIAINILMSQYVLSPNWYDMHKIATVDEE 582

Query: 576 QGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +  +  +     + + + + +   +I  Q+    +  + +        + +V   I
Sbjct: 583 KDMKATILGAIFHLKKQKVGKILADIRNQLKTTQSADDEDILLSQFVHMKKVEKSI 638


>gi|254509364|ref|ZP_05121451.1| DNA primase [Vibrio parahaemolyticus 16]
 gi|219547706|gb|EED24744.1| DNA primase [Vibrio parahaemolyticus 16]
          Length = 389

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 147/399 (36%), Positives = 221/399 (55%), Gaps = 25/399 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114
           +CF C V G+ + FL       F+E+++ LA+  G+ +P            + +     +
Sbjct: 60  HCFGCGVHGNAIDFLMEYERLEFVEAIEELASFLGLDVPREQRQGGGFQSNQPQASTAQK 119

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  L+     F+   LK +  K    YL +RG+    ++ F +GY  D    +R++  
Sbjct: 120 RTLYDLMGSIAQFYRDQLKQSSSKIAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFG 179

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           Q+  ++E ++  G+LI+ D     YDRFR R++FPIR  RG+VI FGGR +    + KYL
Sbjct: 180 QQQQTQEMLVSGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVI-GDGTPKYL 237

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKGK LY  +  +   +            S I++VEGYMDV++L Q GV   
Sbjct: 238 NSPETPIFHKGKELYGLYEVMQAHR----------EPSQILVVEGYMDVVALAQYGVDYS 287

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGT+ T   ++LL++ +  +V C+DGD  G  AA++A++  L +L  GN + F+ L 
Sbjct: 288 VASLGTSTTGDHIQLLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLP 347

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR 393
            GEDPDS++R +GK AFE+ I ++ PL   L+    E  
Sbjct: 348 DGEDPDSYVRKFGKQAFEQQIEQATPLSSYLFDNLIEIH 386


>gi|297243193|ref|ZP_06927130.1| DNA primase [Gardnerella vaginalis AMD]
 gi|296888842|gb|EFH27577.1| DNA primase [Gardnerella vaginalis AMD]
          Length = 691

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 138/707 (19%), Positives = 248/707 (35%), Gaps = 97/707 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I+ +     + +++   V           G +   CPFHDEKTPSF    S G +
Sbjct: 5   IVKEDIERVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTPSFSVRPSLGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLIR 119
           +CF C   GD   ++       F E+V+ LA    + +      +   + +   +  L+ 
Sbjct: 61  HCFGCGAGGDVFKYVEQKENIDFREAVEFLADRYHIEMHYKQEQNSDSQSRGSKRARLLE 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             E A  FF  +L           L  R         F  GYAP    +L  +L  KGF+
Sbjct: 121 ANEEAQKFFVSNLGTQEAAPARELLAGRNFTPQQSARFSCGYAPKGWDNLVRYLANKGFT 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            +++++AGL   G      YD FR RL +PIR S G+ + FG R L   +S+  KY+N+P
Sbjct: 181 RQELLDAGLARLGQR--GIYDYFRGRLTWPIRDSTGRTLGFGARKLYDDDSISAKYINTP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T L+ K + LY    A   + K             +++VEGY DV++   AG+   V++
Sbjct: 239 DTALYRKTQVLYGIDLAKANIVKK----------RQVVIVEGYTDVMACHLAGIDTAVAT 288

Query: 298 LGTALTEYQLRLLWK----------------------LSPRIVLCFDGDDPGLRAAYKAI 335
            GTA      +++ +                      +S RIV  FDGD  G +AA  A 
Sbjct: 289 CGTAFGVEHAKIVRRLIADDSLGAIQLVGPLKVDGQSVSSRIVFTFDGDAAGQKAALHAF 348

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
            L    L    +    +     DP       G  A   L+  + PL D +          
Sbjct: 349 GLDSAFLT---QTFVAVADNNLDPCDLRIQRGDEAVRSLVAHASPLYDFVIDTVINRFET 405

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---- 451
           +    +      +   I  I+D+ L   Y +     +         E     R  K    
Sbjct: 406 SYTTGQMGAIKAVAPLIAQIRDRSLLDLYMRKAVRSIGVDLAVMRNEVESARRRLKVRDD 465

Query: 452 --------------------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
                               +NA  +  +    +    +    ++     + E   +  L
Sbjct: 466 DAYAQKHNVIPTFGQQINDDRNAGFKASRMEIIKSSAKNQHYYRVDDAVFMCEQQFMALL 525

Query: 492 INHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           +  P    E  + +L    +     + L+    +        + + +   +  +  G LL
Sbjct: 526 LQVPLAFDEKLFAQLTLNNFITPVFRTLFQAFVAAGGLPVGNVSQGLWLHMMTKAAGPLL 585

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQAL---------------------ALYKRFR 589
           + +  ++    L   +    + D      Q +                      L  R  
Sbjct: 586 ESVITELSVMPLPLPSPADTLEDTGNRQNQQVSNGSPSDLLRKATSAESKYANELLIRLL 645

Query: 590 LL--SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +   R+      ++A++    + ++   L+  +  +      ++SQ
Sbjct: 646 DIGYMRRIGAARVRMAKLK---DGQEKLELLGKITSMEAARKNLQSQ 689


>gi|291531111|emb|CBK96696.1| DNA primase, catalytic core [Eubacterium siraeum 70/3]
          Length = 586

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 140/556 (25%), Positives = 240/556 (43%), Gaps = 25/556 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    DF+ ++     I ++I  YV   +  T     DY   CPFH EKTPS H   +  
Sbjct: 1   MRLSEDFLLNIKESNDIYDVISSYVPLKKSGT-----DYVCNCPFHSEKTPSCHIYMATQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            +YCF C   GD ++F+       ++ESV+ LA  AG+ +P  +     K   +T    +
Sbjct: 56  SFYCFGCGAAGDVINFIRLYEHLDYMESVKFLAQRAGIAMPDEEGDNGIK--RRTRAYEM 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A  FFH  L +   K    YL  RG+  H I  + LGYAPD+  SL++H+   G+S+
Sbjct: 114 NREAGRFFHKYLYSPAGKEGLDYLYGRGLTDHTIRTYGLGYAPDTWDSLKKHMNSLGYSD 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            ++ EA LL     S   +D F+ R++FP    RG ++ F GR +   ++ KYLN+  T 
Sbjct: 174 SEMEEASLLSKSSKSGNYFDFFKYRVMFPFIDVRGNIVGFSGRVIGGEDNRKYLNTKATA 233

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +++K   LY+   A N               S +I+ EG +DV+S+ QAG +N V++ GT
Sbjct: 234 VYNKSTFLYSLNHAKNA------------GESVLIMCEGNLDVISMYQAGFKNAVATCGT 281

Query: 301 ALTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           A+T+   R +      +++L +D D  G +A  +A+++       G   N + +   +DP
Sbjct: 282 AITDSHARNIANLGFKKVILAYDSDAAGQKATARAMNI---LDKVGISANVLTMQGAKDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +I+ +GK AF+ LI  S   +D   K+       + P  ++E      + I +I    
Sbjct: 339 DEYIKKFGKEAFQLLIDGSQSGMDYELKKIRSETDLSAPGGKSEYLKKAVSFIANINSPI 398

Query: 420 LRYYYSQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            R  Y   I     + +             R   +   +R               +    
Sbjct: 399 DRAVYISTIAQECDVNRANVDIAVNQIISKRNKTREKDNRRAILNGSVNRDKINPEASRY 458

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E  ++  L + P  L++   +++   +     ++L+  L +            +
Sbjct: 459 PAETQAERGIIAYLFHSPDALKKITDKISSDDFVTEFNKRLFIDLTAMISCGLSNDVSML 518

Query: 538 HQRLCERGFGELLKQL 553
             R        + K +
Sbjct: 519 ADRYSAEEVASIYKLI 534


>gi|306829362|ref|ZP_07462552.1| DNA primase [Streptococcus mitis ATCC 6249]
 gi|304428448|gb|EFM31538.1| DNA primase [Streptococcus mitis ATCC 6249]
          Length = 591

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 143/629 (22%), Positives = 263/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 8   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G SF+E+VQ L    G+ L +      ++      L  + E 
Sbjct: 63  CFGCGRSGDVFKFIEEYQGVSFMEAVQLLGERVGIQLAMPIQSRPQQLSPHQALYDMHEE 122

Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F++G AP  R  L + L  K F E+ 
Sbjct: 123 AARFYHAILMTTKMGEAARAYLYKRGLTDDVLKHFQIGLAPVERNYLYQRLSGK-FEEKD 181

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     +    +D F  R++FP+ + +GQVIAF GR   + +    KY NS  T 
Sbjct: 182 LLDSGLFYLS-DDNQFFDTFFGRIVFPLTNDKGQVIAFSGRIWQETDGQTAKYKNSRSTA 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K           + + L+EG+MDV++  +AG++N V+S+GT
Sbjct: 241 IFNKSYELYHLDKAKKGTGKI----------TELYLMEGFMDVIAAYRAGIENAVASMGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL++  +  L + + +IVL +DGD  G  A  KA++ +         V  V +    DPD
Sbjct: 291 ALSKEHVDHLKRFTKKIVLSYDGDKAGQAATAKALEEL-----KDFSVEVVRVPDAMDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++         L+ ++       +  + +  + +    + E    +   I   K    
Sbjct: 346 EYLQKNSPEDLAYLLTKTRISPIEFYIHQLKPENSDNLQAQIEFIEKIAPLIAKEKSITA 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L     + + +     R  ++  R ++      R +  SL   +     
Sbjct: 406 QNSYIHILADNLPSFDYQQVEQIVNESRIVQRQERVKE----HPRPVAISLPVTRQLTAV 461

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  +  +P +L +  +   D  +D  E Q L+  L              +   
Sbjct: 462 MRAEAHLLYRMAENPVVLNDY-RLREDFFFDTPEFQILYELL-------------SVEGE 507

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +          +++             E +  ++ +     +   +   LLS+    I+K
Sbjct: 508 IRSEELSHQTPEVENAWYHVLGLDLPAEMSPQELME-----VEATRNRALLSKDNLRIKK 562

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 563 KVQEASHLGDTDTALEELQRLISQKRRME 591


>gi|71899300|ref|ZP_00681461.1| DNA primase [Xylella fastidiosa Ann-1]
 gi|71730926|gb|EAO32996.1| DNA primase [Xylella fastidiosa Ann-1]
          Length = 577

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 164/609 (26%), Positives = 276/609 (45%), Gaps = 47/609 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    I  ++G  +   R+       +Y + CPFHDE++ SF+ + +K F
Sbjct: 3   RIPDAFIDELLARTDIVEVVGSRLPLKRQGK-----EYASRCPFHDERSASFYVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   G  +SFL       F+++V  LA  AG+ +P    +    +     L   +
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEVPRETQQKHAHQDDSRPLYAAL 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E A+ FF   L+N    ++  YL+ERG+D +    F++GYAPD    L++ L        
Sbjct: 118 EAASHFFQKHLENN--PKVQAYLNERGVDINTRTRFQIGYAPDGYSVLKDTLGTDERRIT 175

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +  AG+L   D     YD+FR+R++FPI   RG+VIAFGGR L K +S KYLNSPET L
Sbjct: 176 LLDRAGMLSKNDRDH-VYDKFRDRVMFPIFDRRGRVIAFGGRVLDKDKSPKYLNSPETTL 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHK + LY  +      Q   R          +I+VEGYMDV+SL Q G+   V++LGTA
Sbjct: 235 FHKSRELYGLWQVRQAHQNIER----------LIVVEGYMDVISLFQFGITQAVATLGTA 284

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T     LL++ +P +  CFDGD+ G +A ++A++ +L  +  G +  F+ L  GEDPD+
Sbjct: 285 TTVEHAELLFRNTPDVYFCFDGDNAGRKAGWRALESILPRMKEGRQAFFLFLPDGEDPDT 344

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +R  GK AF + + +++PL    +   + + + +T D +A L    +  +  I +    
Sbjct: 345 IVRKEGKNAFNERLKQAIPLSQFFFDALSSDIALHTLDGKARLAERARPLLMKIPEGAFN 404

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               Q +                             +   P      +S    +L+ +  
Sbjct: 405 DLMRQRLAHLTGV-----------------------NIAHPGPAPAATSRPATRLTAQKR 441

Query: 482 LREAALLLTLINHPAILQEQYQ--ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                 +  ++  P++         LA        +      L     ++       + +
Sbjct: 442 NLIHTTIAIILQQPSLAMTLNTPYPLAINDLKQPGIAL-LLELLDLIHQRPEITTGALLE 500

Query: 540 RLCERGFGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              ER    LL+ L  Q        W+   +  +  +++   Q        + L++  ++
Sbjct: 501 HFTEREEYVLLQTLATQTMPGDTATWTQELQGAMTQMQKQLLQQRLNALHTKQLTQPLDD 560

Query: 598 IEK-QIAQV 605
           I+K ++ ++
Sbjct: 561 IDKYELREL 569


>gi|300868030|ref|ZP_07112668.1| DNA primase [Oscillatoria sp. PCC 6506]
 gi|300333950|emb|CBN57846.1| DNA primase [Oscillatoria sp. PCC 6506]
          Length = 674

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 167/680 (24%), Positives = 287/680 (42%), Gaps = 69/680 (10%)

Query: 1   MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           M  P    D I+++     I ++I  +V   +R       D+   CPFHDEK+PSF  + 
Sbjct: 1   MQIPRLHPDTIEEVKQRADIVDVISTHVVLRKRGK-----DFVGLCPFHDEKSPSFTVSP 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKI 113
           SK  +YCF C   G+   FL  L   SF + V  LA    VP+    P    +++++  +
Sbjct: 56  SKQMFYCFGCGAGGNAFKFLMELGKRSFSDVVLELARQHQVPVQTLEPEQRQELQRQISL 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH 172
           +  L  ++ +A+ F+ H+L+ ++ ++   Y   ER +    I+ F+LGYAP    +L  +
Sbjct: 116 REQLYEILALASSFYEHALRQSQGQKALEYLQVERKLSEETIQQFQLGYAPSGWEALYSY 175

Query: 173 -LRQKGFSEEKIIEAGLLI-DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
            + QK +  + + +AGL+I         YDRFR+RL+ PI   +G+VI FGGRTL   E 
Sbjct: 176 LVEQKHYPLQLVEQAGLIIPRKSGGNGYYDRFRDRLMIPICDLQGRVIGFGGRTL-TDEQ 234

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF KGK LY    A   + K  R           ++VEGY D ++L  AG
Sbjct: 235 PKYLNSPETELFDKGKTLYALDKAKTAISKQDRA----------VVVEGYFDAIALHAAG 284

Query: 291 VQNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNR 347
           + N V+SLGTAL+  Q+R L + +   +IVL FD D  G +AA +AI ++         +
Sbjct: 285 IANAVASLGTALSLDQVRQLLRYTESKQIVLNFDADKAGTQAAERAIGEIEKLACRGEVQ 344

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
           +  + +  G+D D +++ Y    + +L++ +   +D   +    N      D+  ++   
Sbjct: 345 LRILNIPDGKDADEYLKSYSADKYSELLLNAPLWLDWQIQNLLLNCDLKQADQYGKVTQE 404

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQ------------------------LFQKYITEH 443
           +   +  I D     +Y+      L +                        L Q      
Sbjct: 405 MVKLLTKITDDNQLAHYNYECAQILSKGDSTRVKFLAETLLNQVVSYWAKLLNQDESLAL 464

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQS--SLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
               R   K +R    +        S  +L + +        EA LL   I+ P   Q  
Sbjct: 465 PPLIRNKLKGSRQVRSRRAGSENKSSIEALSQARERSVLEQPEAFLLRIYIHSPEHRQAV 524

Query: 502 YQELA--DIRYDNNELQKLWSFLFSDFVEQK---YFLPEEIHQRLCERGFG-----ELLK 551
            + +   D+++  +  + LW  L +  +  K         +  +L           + + 
Sbjct: 525 IEAIEARDLQFSLSHHRFLWLQLLNLKMLDKTSLQADASVLISKLQNNYLEFPTQLQQIS 584

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
            L      +          I       +Q     +R   L+  +K +   Q  +  A   
Sbjct: 585 HLFHLDELSEKHILRPPLAIRAAIAYIEQITTQKRRVAALNMWEKTDAIAQ--REQADRY 642

Query: 611 AEKTAILISILHEVHIQIHQ 630
            ++  +    + E+  ++ +
Sbjct: 643 YQQFWVEQEWIKELE-RLRR 661


>gi|332878802|ref|ZP_08446517.1| DNA primase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683153|gb|EGJ56035.1| DNA primase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 655

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 162/667 (24%), Positives = 274/667 (41%), Gaps = 60/667 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I  +   + +  +IG +V   R  +N     Y    PF +E+TPSF  +  K  +
Sbjct: 2   ITKNTIDKVYDQMRVEEVIGDFVQLKRAGSN-----YKGLSPFSNERTPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA    + +    P  E+KEK   +  L  +
Sbjct: 57  KDFSSGKGGNAIAFLMEHEHFTYPEAIRYLAKKYHIEIEESQPSTEEKEKADERESLYIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  FF  SL N    +     Y  ERG     I+ F LG++PD   +  +    KG+
Sbjct: 117 SEYAQQFFQDSLLNTEAGKAIGLSYFKERGFTDDTIKKFCLGFSPDEWTAFTDAALAKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
               + + GL I   N    +DRF+ R++FPI S  G+V+ FGGR L+  +   KYLNSP
Sbjct: 177 QLPYLEKTGLTIV--NGDRKFDRFKGRVMFPIHSMSGRVLGFGGRILTNDKKQAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  F A   + K          +    LVEGY DV+ L Q G++NVV+S
Sbjct: 235 ESDIYHKSKVLYGIFFAKQAIAK----------ADNCYLVEGYTDVIQLHQKGIENVVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ +L+P I + +DGD  GLRA+ + IDL    L  G  V       GE
Sbjct: 285 SGTALTPDQIRLIHRLTPNITVLYDGDAAGLRASIRGIDL---ILEQGMNVKVCTFPDGE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R          + +                + + P ++AE    + N I  I D
Sbjct: 342 DPDSFARKTAYEDLVIYLQDHATDFIRFKASLLMQEAQDDPIKKAETIRDMINSIAKIPD 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS-LVKGKL 476
              R  Y +     +    +   +  S   +      +  ++K P+ ++ ++   V+ + 
Sbjct: 402 AIKREVYVRECAVIMDISEEVLFSTLSQMLKKDLYEGQKVERKQPTMQVSRTPEAVEQRG 461

Query: 477 SKKPSLREAALLLTLINH----------------------------PAILQEQYQEL--A 506
             K    E  L+ TL+ +                              + ++ + EL   
Sbjct: 462 INKLETLEHDLIKTLLLYANRECEFIDTILEQDEEGNLKEKQVQQTLKVYEKIFLELQED 521

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           +I   N + ++++  L     E   +  + I   L      ++   +             
Sbjct: 522 EIELANPDFKQIYQLLMQKLNEDPEYNIDRIANELPVELSEKVSDLIMEDENRHLDDWER 581

Query: 567 TEANIVDVRQ---GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
            +    D           + L  R  L+    +EI+ Q A    + +  +    +    +
Sbjct: 582 RDIIAKDKDAHINAMVSDIILNIRTLLVRHLIQEIQAQFASAEEEEKR-ELLETVKSYLQ 640

Query: 624 VHIQIHQ 630
           +   + +
Sbjct: 641 LQKLLAK 647


>gi|261367094|ref|ZP_05979977.1| DNA primase [Subdoligranulum variabile DSM 15176]
 gi|282571218|gb|EFB76753.1| DNA primase [Subdoligranulum variabile DSM 15176]
          Length = 596

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 151/556 (27%), Positives = 256/556 (46%), Gaps = 34/556 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+++I++++    I  +IGQYV   RR            CPFH+EKTPSF        +
Sbjct: 2   IPQEYIQEVVRRNDIEEVIGQYVQLRRRGRTLS-----GLCPFHNEKTPSFVVYPDTQSF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           YCF C   GD ++F+       ++ESV++LA+ AG+PLP  + K  +    +  L+ +  
Sbjct: 57  YCFGCGAAGDVINFVRKYNNLGYVESVKQLASRAGMPLPEEEDKEARA---RQRLLEINR 113

Query: 123 VATDFFHHSLKNARDKRL---HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            A  +F+  L     +      Y+ ++RG+   AI  F LGYAP+    L  +LR++GF 
Sbjct: 114 CAARYFYEQLNAKTPEAALARRYWKEKRGLSDAAIRRFGLGYAPEDFSGLLHYLRRRGFR 173

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           E+++  +GL I        YD FR+R++ PI   RG +IAFGGR L      KY+NSPET
Sbjct: 174 EDELEHSGL-IKRSAKGNLYDIFRHRVMVPIIDVRGSIIAFGGRVL-DDSKPKYINSPET 231

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           +++HK + L+    A     K              IL EGYMDV+S+ +AG    V + G
Sbjct: 232 VVYHKSRTLFALNIAKKSASKRY------------ILCEGYMDVISMHEAGFDTAVCACG 279

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALT  Q++LL + +  +VL +D D+ G +A  +++ L         +V+ +     +DP
Sbjct: 280 TALTPEQVKLLSEYADEVVLSYDSDEAGQKATERSLGLFANSP---VKVSVLSYQGAKDP 336

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQ 418
           D FI+ YG+  F+ L+  +    +   K+        + D R        + +       
Sbjct: 337 DEFIKKYGRERFDMLLNGTANPTEFQLKKAKAKYDLRSDDGRLNYIREAIDILTGHGVTP 396

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD-----QKGPSQRLMQSSLVK 473
             R  Y+  + +      Q  +++  G  R   + +  ++     QKG +  +       
Sbjct: 397 TARDVYAGRLAEETGVAKQAILSQMQGALRAADRRSHRKEQKEMVQKGIAADIRVPYTQG 456

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           G  +   +     L+  L+  P  +      L        E+Q+    +F    E++   
Sbjct: 457 GDAALGAASASRQLVAALLQDPDEVPYVRARLNMDTILLPEMQQALQAIFRCAEEKQPVN 516

Query: 534 PEEIHQRLCERGFGEL 549
              + QRL ++ F ++
Sbjct: 517 LTSLQQRLDDKAFQQV 532


>gi|189502290|ref|YP_001958007.1| hypothetical protein Aasi_0912 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497731|gb|ACE06278.1| hypothetical protein Aasi_0912 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 640

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 179/651 (27%), Positives = 292/651 (44%), Gaps = 43/651 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I+ +     I  ++G +V   +R  N      WACCPFH E+TPSF  + SKGFY
Sbjct: 2   LNQETIQAVQQAALIEEVVGDFVTLKKRGQNL-----WACCPFHHERTPSFSVSPSKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
            CF C   GD ++F+ A+ G SFIE+V+ LA    +P+   +   K    +  +  L  L
Sbjct: 57  KCFGCDAAGDSIAFIKAIEGISFIEAVKYLATKYSIPIQETEEGHKDIAAQHERDSLYIL 116

Query: 121 IEVATDFFHHSLKNARDKR--LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           +++A +++  +L    + +   H YL ERGI    I+ F+LGY+ DS     E+  ++G+
Sbjct: 117 MKLANNYYIQNLWEHSEGQRIGHAYLKERGITDDFIKQFELGYSLDSWQGFHEYALKQGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237
           ++  + +AGL++   N    YDRFR R+IFPI +  G+VIAF  R L       KY+NSP
Sbjct: 177 TDGLLEKAGLIV--HNQEKLYDRFRGRVIFPIHNLSGKVIAFAARILKPADNQPKYVNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++HK   LY  + A   ++                LVEGY DV+SL  AG++NVV+S
Sbjct: 235 ETPIYHKSDVLYGIYQAKQKIK----------QVDKCFLVEGYTDVISLHMAGIENVVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT+ Q++L+ + +  I + FDGD  G++AA + +D     L  G  V  +LL  GE
Sbjct: 285 SGTALTDSQIQLVSRFTKHITVLFDGDTAGIKAALRGVD---KILEKGLHVKVILLPPGE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS+ +     AF+  + E          +       + P ++AE    +   I  I D
Sbjct: 342 DPDSYSKKLDSLAFQTYLQEHEQDFITFKAKLLMEGIGDDPTQKAEAIKEILQSIALIPD 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ------RLMQSSL 471
              R  + Q     L       + EH+      +K      +   +          +  L
Sbjct: 402 AVNRTLFLQQCSRLLDINEGVLLGEHNKILVRKEKEHHRPHKLVHNPVNELQLTAKRGEL 461

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQE--------QYQELADIRYDNNELQKLWSFLF 523
           +    +      E   +  L+N+ +I+ E          QELAD+ + +   + + S   
Sbjct: 462 IPLNWAATIEAYEQESIRLLLNYGSIILEDGNPLSTYLLQELADVPFQHPVYKHILSTYE 521

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ--- 580
              ++++        Q   ER     +         +  W    + NI        +   
Sbjct: 522 ELALQEQVIDINFFVQHTDERIQKTAIDLTASPYEVSDKWQEKYQINISKEEDNLYRNAY 581

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAK-GEAEKTAILISILHEVHIQIHQ 630
              L  + RL+ +  EE  K +     +  E +K   + + L +    I Q
Sbjct: 582 KNILRLKLRLIHQLIEENNKLLKNTVHEPEEEDKLLQVYATLKQSETAIAQ 632


>gi|325299910|ref|YP_004259827.1| DNA primase [Bacteroides salanitronis DSM 18170]
 gi|324319463|gb|ADY37354.1| DNA primase [Bacteroides salanitronis DSM 18170]
          Length = 698

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 162/699 (23%), Positives = 288/699 (41%), Gaps = 96/699 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  ++    I +++ ++V   +R  N     Y   CPFH+EKTPSF  + SKG  
Sbjct: 2   IDQATIDRIMDAAQIVDVVSEFVTLRKRGVN-----YIGLCPFHNEKTPSFSVSPSKGVC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
            CFSC   G+ + F+      S+ E+++ LA    + +   +   E+K+    +  L  +
Sbjct: 57  KCFSCGKGGNVVHFIMEHEQLSYYEALKWLAKKYNIEIKERELTDEEKQAHSLRESLFVV 116

Query: 121 IEVATDFFHHSLKNARDKR--LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A+++F + L N  D +     YL  RG     I+ F+LGY+ D+  +L     QKG+
Sbjct: 117 NQFASEYFQNILYNNIDGQRIGMTYLRGRGFRDDIIKKFQLGYSTDNHDALARAALQKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            EE +++ GL    ++  T  DRF  R+IFP+ +  G+V+AFGGR L   +K   +KY+N
Sbjct: 177 KEEFLVKTGLCYRKEDG-TLRDRFWGRVIFPVHTISGKVVAFGGRVLSAATKNVQMKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK + LY  + A   + +  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESEIYHKSRELYGIYFAKQAIVRQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+RL+ + +  I + +DGD  G++A+ + ID+    L  G  V   LL  
Sbjct: 286 ASSGTALTSEQIRLIHRFTNNITVLYDGDGAGIKASIRGIDM---LLEEGMNVKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T ++  I +                +   P +RA L   +   I+ I
Sbjct: 343 GDDPDSFARKHNATDYQAYINDHEVDFIRFKTDLLMEEAGKDPIKRASLISSIVKSISVI 402

Query: 416 KDQKLRYYYSQAIRDRLQ-------QLFQKYITEHSGYGRYWKKNARHRDQ--------- 459
            D  +R  Y +     LQ       +   K I +        ++  + R+Q         
Sbjct: 403 PDAIVRSVYIRECSQLLQMEEKVLIEATAKLIEQAREAKFKEQQRKKEREQRLTATPQAS 462

Query: 460 --------------------------------KGPSQRLMQSSLVKGKLSKKPSLREAAL 487
                                             P++        +G   K    +E  L
Sbjct: 463 VPESSPEAQTNETPAADSTSETGNAPFPSEPAPFPTEPYTSYIPSEGNEQKVFYAKEEDL 522

Query: 488 LLTLINHPAIL-----QEQYQEL--------------ADIRYDNNELQKLWSFLFSDFVE 528
           +  LI +   +      E  +++               ++++ +   + +        + 
Sbjct: 523 VRMLIRYGEKVMCYVENETGEQIPFTVTECIASGLKEDELQFYDPLHRLVLQE-CEAHLN 581

Query: 529 QKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
              F PE       +    +L   L  DR              +  +        L L  
Sbjct: 582 DPNFNPERYFIAHPDPAVSKLAVDLVSDRYQLSKYHSKGQKIVSDEERLYELVPRLLLDF 641

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           +  ++  + +   + +A      + ++   ++    E+ 
Sbjct: 642 KLSIVEEEMKHTIQALANPEIANDPQRCLEIMKRYKELQ 680


>gi|282900147|ref|ZP_06308104.1| DNA primase [Cylindrospermopsis raciborskii CS-505]
 gi|281195029|gb|EFA69969.1| DNA primase [Cylindrospermopsis raciborskii CS-505]
          Length = 638

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 157/654 (24%), Positives = 273/654 (41%), Gaps = 46/654 (7%)

Query: 1   MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           M  P    D ++++     I ++I  YV   RR       D+   CPFH+EKTPSF  + 
Sbjct: 1   MQIPRLHPDTVEEVKHRADIVDVISDYVVLRRRGK-----DFVGLCPFHEEKTPSFTVSP 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKI 113
           +K  YYCF C   G+ + F+  L    F E V  LA    VP+    P    +++++  +
Sbjct: 56  TKQIYYCFGCQASGNAIKFMMDLNKRQFAEVVLDLAKRYQVPVKTLAPEQRQELQRQLSL 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGI-DSHAIEMFKLGYAPDSRYSLREH 172
           +  L  ++   + F+ H L+    ++   YL ++    +  +E F LGYAP    +L  +
Sbjct: 116 REQLFEVLASTSQFYQHVLRQDIGQQALQYLQKKRFLKTETVEKFALGYAPPGWETLYHY 175

Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
            +  K +  + + +AGL+         YD FRNRL+ PIR  +G+VIAFGGRTL   E  
Sbjct: 176 LVENKNYPPQLVEKAGLIKPRKEGGGYYDVFRNRLMIPIRDVQGRVIAFGGRTL-TDEQP 234

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF K K L+    + + + K              ++VEGY D ++L   G+
Sbjct: 235 KYLNSPETELFDKSKTLFALDVSKDAISKL----------DQAVVVEGYFDAIALHANGI 284

Query: 292 QNVVSSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348
            NVV+SLGTAL+  Q+RLL +   S ++VL FDGD  G+ A  +AI ++         ++
Sbjct: 285 NNVVASLGTALSLEQVRLLLRYSESKQLVLNFDGDKAGINATERAIGEISNLAYKGEVQL 344

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
             + +  G+D D +++ +  T + +L+V++   +D    +  + R    P +   +    
Sbjct: 345 KILHIPDGKDADEYLKNHSVTDYGQLLVDAPLWLDWQIAQVIQGRDLRQPTDFQLVSREF 404

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              +  I +     YY     + L     + I              R    + P      
Sbjct: 405 VKLLQKILNSDTLNYYISHCAEILSLGDTRLIPLRVENLITQVAPRRTPTPRPPQPDSTT 464

Query: 469 SSLVKGKLSKKPSLREAA---LLLTLINHPAILQEQYQEL--ADIRYDNNELQKLWSFLF 523
           S         +PSL E A   LL   ++ P   Q   + L  +++ +  +  + LW    
Sbjct: 465 SPNTHQISHPQPSLLEQAEGLLLRIFLHCPQERQVIIETLGSSNLEFSVSHHRFLWEKSL 524

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR---QGYQQ 580
                       ++  +L               +          E N  ++        Q
Sbjct: 525 QF-----PSQTLDLISQLQNLYLET-----QNDLGPVQHIFQLNEKNKQEILLRTSQLVQ 574

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           A            +     +   +     + ++ ++    ++   ++I ++  Q
Sbjct: 575 AAIACMEKVFRENRYRHFLELWQKTDPSTDPDQYSLYTQTIYADKMRIQELSKQ 628


>gi|325267619|ref|ZP_08134271.1| DNA primase [Kingella denitrificans ATCC 33394]
 gi|324980969|gb|EGC16629.1| DNA primase [Kingella denitrificans ATCC 33394]
          Length = 585

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 175/617 (28%), Positives = 277/617 (44%), Gaps = 54/617 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+DF+ DLL    I ++I QYV   +   N     Y ACCPFH EKTPSF  + SK FY
Sbjct: 2   IPQDFVDDLLAKTDIVDVIDQYVPLKKGGAN-----YMACCPFHKEKTPSFSVSPSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-------KKEKIQT 115
           +CF C   G  + F+    G  F+E+VQ LA   G+ +P V  +          K++ Q 
Sbjct: 57  HCFGCGAHGSAIGFVMEHQGLGFVEAVQLLADRVGMSVPNVREENPQAAAQRAAKKQQQQ 116

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L ++++ A  F+   L   R  +   Y+  RG+    I  + +GYAP+    L +  + 
Sbjct: 117 TLEQVVQAACTFYEQQL--PRSPQAWQYVTGRGLSPEIIAHYGIGYAPEGWSPLAQVFQ- 173

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
                         +  DN    YDRFR+R++FPIR+  GQVI FGGR L      KYLN
Sbjct: 174 ---PYPSAALIDSGMVLDNEGRQYDRFRHRIMFPIRNISGQVIGFGGRVL-DDSKPKYLN 229

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP+T LF KGKNLY    A   ++ + R          I++VEGYMDV++L Q GV   V
Sbjct: 230 SPDTPLFDKGKNLYGLHEARQAVKDAGR----------ILVVEGYMDVVALAQFGVGYAV 279

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGT+ T   ++LL++ +  +  CFDGD  G +AA++A++  L  L     ++F+ L  
Sbjct: 280 AALGTSTTAEHIKLLFRQTDHVYFCFDGDAAGRKAAWRALENALPQLKDDKTLSFLFLPP 339

Query: 356 GEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
             DPDSFIR YG+  FE+ L+ ES PL    W+  T     NT + +AEL  H    +  
Sbjct: 340 EHDPDSFIRQYGRQRFEEALLHESKPLSHYFWETLTAGTEPNTQEAKAELVKHAAPLLRQ 399

Query: 415 I-KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           I +   L Y   Q + ++                      A+       S R    + + 
Sbjct: 400 ITQAPTLSYLLRQELSEKTGIDPNNLAQLMGQAAPQRHVAAKSYQLPRESYRQPAPATLL 459

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +  +             ++ P  L +   ELA +     +L KL+         Q+   
Sbjct: 460 QQQLRTLLFNAEW--AEYVSFPDYL-DISDELACLL----DLAKLYR--------QRPIT 504

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--------LALY 585
             +  +   +     +L  +     +A   +      + + + G ++         +   
Sbjct: 505 AAQALEHFRQSPHFAILDSVFAHAAEADSINDNGAEKLQEFQDGMRKIVQKAQTEHINRL 564

Query: 586 KRFRLLSRQKEEIEKQI 602
           ++   LS  ++++   +
Sbjct: 565 RQKPQLSPDEKKLLISL 581


>gi|312130780|ref|YP_003998120.1| DNA primase [Leadbetterella byssophila DSM 17132]
 gi|311907326|gb|ADQ17767.1| DNA primase [Leadbetterella byssophila DSM 17132]
          Length = 627

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 173/642 (26%), Positives = 289/642 (45%), Gaps = 37/642 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+D +  +L    I  ++G++V   RR  N       ACCPFH+EKTPSF  + +KG Y
Sbjct: 2   IPQDTVNQILQAADIGEVVGEFVTLKRRGANL-----IACCPFHNEKTPSFSVSPAKGIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRL 120
            CF C   GD + F+  L G S+ ++++ LA    + +   +    +   +  +  L  +
Sbjct: 57  KCFGCGKGGDSVRFVMDLEGLSYPDALKWLAKKYNIEIKEKEFTDSELAAQNERESLFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A +FF   L N+ + +     Y  ERG     +E F LG+APD R    +   Q GF
Sbjct: 117 SEFANNFFRDYLLNSSEGQSVGASYFIERGFSKPVMERFHLGFAPDGRDLFYKTATQAGF 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSP 237
           S+E + +AGL+    +  T  DRFR R++FPI +  G+ IAFG R L    ++ KY+NSP
Sbjct: 177 SQEVLEKAGLVSKK-DDNTYLDRFRGRVVFPIHNVAGKTIAFGARILKTDAKAPKYINSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++HK K +Y  + A N +++               LVEGY DV+SL QAG++NVV+S
Sbjct: 236 ETEIYHKSKIVYGIYQAKNAIRQK----------ENCFLVEGYTDVISLHQAGIENVVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GT+LT  Q+RL+ + +  I + +DGD  G++A+ + IDL    L  G  V  V+   G+
Sbjct: 286 SGTSLTVEQIRLIGRFTDNITVLYDGDSAGIKASLRGIDL---ILEEGLNVKAVVFPEGD 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS+IR  G  AF + + ++           +         ++AEL   L   I  + +
Sbjct: 343 DPDSYIRKVGGEAFTRYVEQNQKDFIRFKTEISLEDVGQDAVKKAELVESLVLSITKVPN 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R  + Q +   L       I E     +    N +   ++   Q   + ++    LS
Sbjct: 403 PVKRQIFYQEVAKLLNIDEAILINE---GNKKTVTNLKPVAKQDGGQVAPKRNIEMEILS 459

Query: 478 KKPSLREAALLLTLINHPA--------ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           ++    E AL+  L+ +          +    + E       +  L  ++   +  +   
Sbjct: 460 QEDHPEEEALVRDLVLYGQVQISEAHVLADYIFSETEADIVQDPVLNAIYRQYYEFYSRG 519

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +            +    E + Q +    +        E  I + +    + +       
Sbjct: 520 EAPTTRYFISH-PDHRIQEKVIQWETPKHELSQHWKKYEIFIPEYQDNLGENITRINFRI 578

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            L + K+EI + I ++    + EK  IL+  L E   +  +I
Sbjct: 579 ALLKIKKEINQVIEELNFV-DEEKEVILLEHLKEKLAERKEI 619


>gi|298207900|ref|YP_003716079.1| putative DNA primase [Croceibacter atlanticus HTCC2559]
 gi|83850541|gb|EAP88409.1| putative DNA primase [Croceibacter atlanticus HTCC2559]
          Length = 657

 Score =  334 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 152/670 (22%), Positives = 269/670 (40%), Gaps = 62/670 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I  +     +  +IG +V   +  +N     +    PF DE++PSF  +  K  +
Sbjct: 2   ISQNTIAQVFETARVEEVIGDFVQLKKSGSN-----FKGLSPFTDERSPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G  ++FL      S+ E+++ LA   G+ +   +   E+KE+   +  +   
Sbjct: 57  KDFSSGKGGSVVTFLMEHEHFSYPEAIKYLANKYGIEVEETERTDEEKEQASEKESMYLA 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A D+F++ L    + +     Y  ERG     I  F+LGY+PDS  +      +KG+
Sbjct: 117 NEFAKDYFNNMLTKTDEGKAIGLSYFKERGFSEDTINTFQLGYSPDSWEAFTTEAIKKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
             E + + GL I        +DRF+ R++FPIRS  G+V+ FGGR L        KYLNS
Sbjct: 177 QLEFLEKTGLTIV--KEEKQFDRFKGRVMFPIRSMSGRVLGFGGRILDNNNKKAAKYLNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P++ ++ K K LY  + A   + K               LVEGY DV+   Q+G++NVVS
Sbjct: 235 PQSEVYDKSKVLYGIYNAKQTIAK----------EDNCYLVEGYTDVIQFNQSGIKNVVS 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S GTALT  Q+RL+ +L+  I + FDGD  G+RA+ + IDL    L  G  V       G
Sbjct: 285 SSGTALTPEQIRLINRLTKNITVLFDGDAAGMRASIRGIDL---ILEQGMNVKVCTFPDG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDSF +   +      + E+               S N P ++A L   +   I+ I 
Sbjct: 342 EDPDSFAKNNTEEDLLLYLEENAKDFINFKASLLIEDSKNDPVKKAGLIRDMVTSISKIP 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ---KGPSQRLMQSSLVK 473
           +   R  Y +     +    +   +  +       K+   ++Q      S  +++    +
Sbjct: 402 EPIQREIYIKETSRIMDISEEVLFSSLAQLSAKETKDNSKKNQGKSYKQSFEVVKEPEQQ 461

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQEL---------------------------- 505
             +  +    E  ++  L+ +  +  +  +                              
Sbjct: 462 KVVINRLYELERTIISLLLLYGTLEDDFEELYLTEDDDGHPKLEADTQKLKVFEKIYLDL 521

Query: 506 --ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
              +I + N+  Q L++ + S    +     +     +      E+   L    +     
Sbjct: 522 QEDEIAFANSNFQTLYNLIISKLNLESELKIDAFINEIDPEQAKEVTSILMDDEQHVLHD 581

Query: 564 SATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
               E  + D ++   Q +    L  R  L+  Q  E+   +    ++ +  +       
Sbjct: 582 WERKEIFVRDKKESIAQLVSETILSLRQHLVKLQISELMSSLKNADSEQDNSEILQDTMD 641

Query: 621 LHEVHIQIHQ 630
              + + + Q
Sbjct: 642 YKGLELLLSQ 651


>gi|332521659|ref|ZP_08398112.1| DNA primase [Lacinutrix algicola 5H-3-7-4]
 gi|332042748|gb|EGI78948.1| DNA primase [Lacinutrix algicola 5H-3-7-4]
          Length = 652

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 149/631 (23%), Positives = 250/631 (39%), Gaps = 58/631 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +     +  +IG +V   +  +      +    PF DE++PSF  +  K  +
Sbjct: 2   ISKSTIDQVYETARLEEVIGDFVQLKKSGS-----SFKGLSPFSDERSPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA    + +   +   E+KE    +  L  +
Sbjct: 57  KDFSSGKGGNVVAFLMEHEHFTYPEAIKYLAKKYNIEIEETEQSNEQKEAQNKRESLYLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A ++F   L      +     Y  ERG     I+ F LGY+PD   +  +H  +KG+
Sbjct: 117 SEFANNYFQDILHKTNQGKAIGLSYFKERGFTEETIKNFNLGYSPDEWSAFTDHAIKKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
             E + E GL ID       +DRF+ R++FPI+S  G+V+ FGGR L+  +   KYLNSP
Sbjct: 177 KLEFLAETGLTID--KGDKQFDRFKGRVMFPIQSMSGRVLGFGGRILTSDKKAAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  + A   + K               LVEGY DV+ L Q GV NVVSS
Sbjct: 235 ESDIYHKSKVLYGIYHAKQSIAK----------EDNCYLVEGYTDVIQLHQTGVTNVVSS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ +L+  I + FDGD  G+RA+ + IDL    L  G  V       GE
Sbjct: 285 SGTALTSEQIRLINRLTKNITVLFDGDAAGMRASLRGIDL---ILEQGMNVRVCTFPEGE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF +       +  + E+               S N P ++A+    + N I  I D
Sbjct: 342 DPDSFAKTNTLDELKHYLNENAKDFIQFKASVLYEDSKNDPIKKADTIRDIMNSIAKIPD 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  +  Y Q     +    +   +  +   +   +NA  +    P    +       K  
Sbjct: 402 RIKKEVYIQECARIMDISEEVLFSTLAQIDKKDNQNATKQAPSAPKAFDVIKHQQPVKKV 461

Query: 478 KKPSLREAALLLTLINHPAILQEQYQEL------------------------------AD 507
               + E  ++  L+ +    ++    +                               +
Sbjct: 462 DVQYVLERKIIEVLLLYGNRTEDFEDLVLKENEEGELVLEPVVQQSKVFEKVFLDLQEDE 521

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
           + + N + + L+  +     +      E +   +      ++   L    R         
Sbjct: 522 MEFSNPQFKDLYYRIIETLNQNPDVATEHMINTVDAEIGNQITTILMEDERYELSDWERN 581

Query: 568 EANIVDVRQGYQQAL---ALYKRFRLLSRQK 595
                       Q +    L  R  L+ ++ 
Sbjct: 582 NIFPKHKTDSVSQLVSETILSLRCHLIDQKV 612


>gi|254495064|ref|ZP_05107988.1| DNA primase [Polaribacter sp. MED152]
 gi|85819414|gb|EAQ40571.1| DNA primase [Polaribacter sp. MED152]
          Length = 670

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 152/687 (22%), Positives = 271/687 (39%), Gaps = 79/687 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  I  +     +  +IG++V   +  +N     +    PF DEK+PSF  +  K  +
Sbjct: 2   ISRSTIDRVFESARVEEVIGEFVQLKKAGSN-----FKGLSPFTDEKSPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G+ +SFL      S+ E+++ LA    + +   +   E+K +   +  +  +
Sbjct: 57  KDFSTGKGGNAISFLMEHEHYSYPEAIKWLAKKYNIEIEETEQTDEQKAQMNERESMFLV 116

Query: 121 IEVATDFFHH-SLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A D+FH   L   + K +   Y  ERG     I+ F LGY  D   +       KG+
Sbjct: 117 SKFAKDYFHDLMLNTNQGKAIGLSYFKERGFTDETIKKFDLGYCLDEWDNFTNAALAKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
             + +   GL I        +DRF+ R++FPI S  G+++ FGGR L   +   KYLNSP
Sbjct: 177 DLKYLASTGLTIV--KENKQFDRFKGRVMFPIHSMSGRILGFGGRILKADKKAAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  + A   + K               LVEGY DV+S  Q+ V+NVV+S
Sbjct: 235 ESDIYHKSKILYGIYQAKKEIAKQ----------DNCYLVEGYTDVISFNQSNVENVVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ +L+  I + FDGD  G+RA+ + IDL    L  G  V  V    GE
Sbjct: 285 SGTALTSDQIRLVNRLTKNITVLFDGDAAGIRASIRGIDL---ILEQGMNVKVVQFPDGE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF + +  +  +  + +S               S N P ++A +   +   I+ I D
Sbjct: 342 DPDSFAKAHTNSELKAYLEDSAQDFINFKVSLLLKDSNNDPVKKAGVIRDIVTSISKIPD 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG--- 474
              R  Y Q     ++   +   +E +   +    N   + +   S     +        
Sbjct: 402 SIQREVYIQECSRIMEISERVLFSELAQLLKKEVTNKARKSKPQASSNQDPNQPPPEYFA 461

Query: 475 -----------------KLSKKPSLREAALLLTLINHPAILQEQYQEL------------ 505
                            K   + S+ E  ++  L+ +     +  +E+            
Sbjct: 462 ELEQAQMGVVKGGAVAFKKVDELSILEREIIRILLLYGNEQVDFIEEIINVDEDGKETIT 521

Query: 506 ------------------ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
                              +I + N+  Q++++ +     +      + +          
Sbjct: 522 TRKYQNTVSAEIYVHLHDDEIEFSNDIFQEIYTEVIHQINQSDKLNIDSLVNHPNPSIAN 581

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA---LYKRFRLLSRQKEEIEKQIAQ 604
            +   L  + +            +    +   +A+       R  L+ ++ EE+  +   
Sbjct: 582 TVTSILMDEEKHQLSNWEGQNIFVTKATEVLYKAVNDSVFNLRRILIGKKIEELMNEAKD 641

Query: 605 VTAK-GEAEKTAILISILHEVHIQIHQ 630
             A   + E      S+  ++  ++++
Sbjct: 642 NEAPILDLEMIKDYTSLKMKLFNKLNR 668


>gi|284051750|ref|ZP_06381960.1| DNA primase [Arthrospira platensis str. Paraca]
 gi|291568257|dbj|BAI90529.1| DNA primase [Arthrospira platensis NIES-39]
          Length = 641

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 163/650 (25%), Positives = 284/650 (43%), Gaps = 37/650 (5%)

Query: 1   MNYPR---DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           M+ PR   D I+++     I ++I + V   RR       D+   CPFH+EK+PSF  + 
Sbjct: 1   MSIPRIHSDTIEEVKERADIYDIISEKVVLKRRGK-----DFVGLCPFHEEKSPSFTVSP 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---- 113
           SK  YYCF C   G+ + FL  L   SF + V  LA    +PL    P+  ++ +     
Sbjct: 56  SKQMYYCFGCGAAGNSIKFLMELDKSSFSDVVLDLARRYNIPLKTESPEQHQEFQKTLSL 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREH 172
           +  L  ++ +AT F+ H+L+  + +    YL   R +    I+ F+LGYAP    ++  +
Sbjct: 116 REKLYEILAIATSFYQHALRQPQGEAALEYLKFSRRLGEETIQEFQLGYAPGGWENIYSY 175

Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
            + QK F  E + +AGL++        YDRFR+RLI PI   +G+VI FGGR+L   E  
Sbjct: 176 LVEQKNFPVELVEKAGLIVPRKAGNGYYDRFRDRLIIPIYDIQGRVIGFGGRSL-GDEQP 234

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF KG+ L+    A   + K              ++VEGY D ++L  AG+
Sbjct: 235 KYLNSPETELFDKGRTLFCLDKAKTAISKQ----------DMAVVVEGYFDAIALHAAGI 284

Query: 292 QNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348
             VV+SLGTAL+  Q+RLL + +   +I+L FD D  G +A  +AI ++          +
Sbjct: 285 NYVVASLGTALSINQIRLLLRYTESQQIILNFDADAAGTKATERAIGEIETLAYRGEVNL 344

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
             + L  G+D D ++  + +  ++ L+ ++   ++    +    ++     E   +   +
Sbjct: 345 RILNLPNGKDADEYLYIHTRHDYQDLVAKAPYFLEWQINQIVGGKNIENVAESQRIATAM 404

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              +  ++D   R  Y Q+  + L Q   + I   +   R    N         S     
Sbjct: 405 VELLRRVEDLNQRTAYIQSCAEILSQGQSRLIPMLADSLRKQI-NKPVNKHHQASTATKS 463

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDF 526
           + +   +        E  LL   ++ P   QE    L    + +   + + LW  +    
Sbjct: 464 NIISAKRDRTLLEEAEGLLLRIYLHCPEYRQEMINALEAQSLEFSLTKYRFLWMKIAEIE 523

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ---GYQQALA 583
           +  +     E    + +       ++   ++ +        E NI D+++   G + A A
Sbjct: 524 LNLQEQQAREDIDLISQ--LQNFDREHSSEISEVSHLFYLNENNINDIQRPSMGIRTATA 581

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             +      R  + ++K       K   E        ++    ++ ++E 
Sbjct: 582 CLEWVICEKRYLQYLDK-WKNTDIKLNLELAEYYQQQIYAEQKRMKELEQ 630


>gi|283783499|ref|YP_003374253.1| DNA primase [Gardnerella vaginalis 409-05]
 gi|283441635|gb|ADB14101.1| DNA primase [Gardnerella vaginalis 409-05]
          Length = 718

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 140/699 (20%), Positives = 250/699 (35%), Gaps = 81/699 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I+ +     + +++   V           G +   CPFHDEKTPSF    S G +
Sbjct: 32  IVKEDIERVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTPSFSVRPSLGVW 87

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLIR 119
           +CF C   GD   ++       F E+V+ LA    + +      +   + +   +  L+ 
Sbjct: 88  HCFGCGAGGDVFKYVEQKENIDFREAVEFLADRYHIEMHYKQEQNNDSQARGSKRARLLE 147

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             E A  FF  +L           L  R         F  GYAP    +L  +L  KGF+
Sbjct: 148 ANEEAQKFFVSNLGTKEAAPARELLAGRNFTPQQSARFSCGYAPKGWDNLVRYLANKGFT 207

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            +++++AGL   G      YD FR RL +PIR S G+ + FG R L   +S+  KY+N+P
Sbjct: 208 RQELLDAGLARLGQR--GIYDYFRGRLTWPIRDSTGRTLGFGARKLYDDDSISAKYINTP 265

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T+L+ K + LY    A   + K             +++VEGY DV++   AG+   V++
Sbjct: 266 DTVLYRKTQVLYGIDLAKANIVKK----------RQVVIVEGYTDVMACHLAGIDTAVAT 315

Query: 298 LGTALTEYQLRLLWK----------------------LSPRIVLCFDGDDPGLRAAYKAI 335
            GTA      +++ +                      +S RIV  FDGD  G +AA  A 
Sbjct: 316 CGTAFGVEHAKIVRRLIADDSLGAIQLVGPLKVDGQSVSSRIVFTFDGDAAGQKAALHAF 375

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
            L    L    +    +     DP       G  A   L+  + PL D +          
Sbjct: 376 GLDSAFLT---QTFVAVADNNLDPCDLRIQRGDEAVRSLVAHASPLYDFVIDTVINRFET 432

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------ 449
           +    +      +   I  I+D+ L   Y +     +         E     R       
Sbjct: 433 SYTTGQMGAIKAVAPLIAQIRDRSLLDLYMRKAVRSIGVDLAVMRNEVESARRRLKVRDD 492

Query: 450 ----------WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR--------EAALLLTL 491
                          +  D +    +  +  ++K     +   R        E   +  L
Sbjct: 493 DAYAQKYNVIPPFGQQIHDDRNAGFKASRMGIIKSSAKNQHYYRVDDAVFMCEQQFMALL 552

Query: 492 INHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           +  P    E  + +L    +     + L+    +        + + +   +  +  G LL
Sbjct: 553 LQVPLAFDEKLFAQLTLNNFITPVFRTLFQAFVAAGGLPVGNVSQGLWLHMMTKAAGPLL 612

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-------LYKRFRLLSRQKEEIEKQIA 603
           + +  ++    L       ++ D      Q +        L K     S+   E+  ++ 
Sbjct: 613 ESVITELSVMPLPLPAASDSLEDTGNRQNQQVTNGSPSDFLRKATSAESKYANELLIRLL 672

Query: 604 QVTAKGEAEKTAILISILHEVHIQIH---QIESQEAMIE 639
            +    +     + ++ L +   ++    +I S EA  +
Sbjct: 673 DIGYMRKIGAARVRMAKLKDGQEKLELLGKITSMEAARK 711


>gi|119025516|ref|YP_909361.1| DNA primase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765100|dbj|BAF39279.1| DNA primase [Bifidobacterium adolescentis ATCC 15703]
          Length = 695

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 142/705 (20%), Positives = 253/705 (35%), Gaps = 96/705 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I+ +     + +++   V           G Y   CPFHDEKTPSF    + G +
Sbjct: 5   IKKEDIEKVRATADLYDIVSATVTLKPSG----TGTYVGLCPFHDEKTPSFSVRPALGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
           +CF C + GD   ++       F ++V+ LA    + L               +  L+  
Sbjct: 61  HCFGCGLGGDVFGYVEHQENIDFRDAVELLADKYHIELHYDKADNVPAHTGSKRARLLEA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A ++F   L           LD R       + F  GYAP    +L  HL  KGF++
Sbjct: 121 NEAAQEYFVSQLMTKEALAARKLLDGRNFSQADCQRFGCGYAPQGWDNLVRHLAGKGFTQ 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           +++++AGL   G      YD FR R+ +PIR S G+ + FG R L + +  + KY+N+P+
Sbjct: 181 QEMLDAGLARQGQR--GVYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDTINAKYINTPD 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A + + K              ++VEGY DV+++  AG+   V++ 
Sbjct: 239 TQLYRKTQVLYGIDLAKSAIVKK----------RQAVIVEGYTDVMAMHLAGIDTAVATC 288

Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336
           GTA      +++ +L                        R+V  FDGD  G +AA  A  
Sbjct: 289 GTAFGAEHAKIIRRLIADDSLGAVQLVGPLKVEGQALSSRVVFTFDGDAAGQKAAIHAFG 348

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
           L         +    +     DP       G  A   LI  + PL D +     +     
Sbjct: 349 LDAAFST---QAFVAVAEDNLDPCDLRIKRGNEAVRALIANARPLYDFVIDSAIDRFDTT 405

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------- 449
               +      +   I  I+D+ L   YS+    R+         E +   R        
Sbjct: 406 YATGQMGAVKAVAPLIAQIRDRSLLDLYSRKAVRRIGVDLDIMQREVAYQRRKLNMRDED 465

Query: 450 -WKKNARHRDQKGPSQRLM-----QSSLVKGKLSKKPSLR-----------------EAA 486
            +    R ++  GPS          +        K    R                 E  
Sbjct: 466 AYAPKRRFQNNAGPSAEPAYAERGANPYANPAARKALEHRDAAEQSYYRIDDAVFICEQQ 525

Query: 487 LLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            + TLI  P  +    +  L    +     + L+  + +        +P+ +      + 
Sbjct: 526 FMATLIQVPLAVDPTMFASLTLSSFMTPVFRTLFQAVAAAGGLPGEDVPQGLWMHNLTKA 585

Query: 546 FGELLKQLDRQVRDAGLWSATTEAN-----------------IVDVRQGYQQALALYKRF 588
            G +L+ +  ++    L    +EA+                      + Y   L +    
Sbjct: 586 GGPMLESVINELAVMPLPLPPSEADANRNTGESQEQSAQLRKPTQEERRYASELIVRLLD 645

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             + R+    ++++AQ+    +  +   L+  + ++      ++S
Sbjct: 646 TGIMRKIGAAQRRMAQLP---DGAEKIELLGQITKLETLRKDLQS 687


>gi|28493255|ref|NP_787416.1| DNA primase [Tropheryma whipplei str. Twist]
 gi|28572633|ref|NP_789413.1| DNA primase [Tropheryma whipplei TW08/27]
 gi|28410765|emb|CAD67151.1| DNA primase [Tropheryma whipplei TW08/27]
 gi|28476296|gb|AAO44385.1| DNA primase [Tropheryma whipplei str. Twist]
          Length = 603

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 140/636 (22%), Positives = 269/636 (42%), Gaps = 44/636 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I ++     I  +IG+Y +  R+      G Y   CPFH E+TPSFH     G 
Sbjct: 3   KIKQEVIHEIKERANIREIIGEYTNLKRQ----SAGAYAGLCPFHSERTPSFHV-RETGL 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   GD +SF+  + G +F+++V++LA   G+ +   +         +++L+   
Sbjct: 58  YHCFGCGKGGDVISFVQEIEGLNFVDAVEQLARTLGITIVYYEGDSTP--DSRSNLLAAC 115

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           + A +F+   L ++       +L  RG D    E +++G++P +   L +HLR KGF+ +
Sbjct: 116 KSAAEFYSEQLLSSTPAVT--FLKSRGFDRDLCERYQIGFSPTNSGDLYKHLRDKGFTLQ 173

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETI 240
           + + AGL      + +  DRFR R+++P++   G ++ FG R L++  +  KY+NSPE+ 
Sbjct: 174 QAVAAGL-----LNPSGMDRFRARIVWPVKDVTGNIVGFGARKLAEDAQGPKYINSPESS 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           L+ K   LY F  A   + K  R          +++VEGY DV+S  Q+G+   V++ GT
Sbjct: 229 LYKKNSLLYGFDVAKKAISKKDR----------VVIVEGYTDVMSCHQSGIDEAVATCGT 278

Query: 301 ALTEYQLRLLWKLSPR---IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +     +RL+ ++      ++  FDGD  G  A  +A            R    +  +G 
Sbjct: 279 SWGIGHMRLIKRMLSDSGVLIFAFDGDQAGQHAIMRAFKDSPEIAA---RSYAAIFPKGL 335

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DP       G  A   L+  ++PL + +   +       T  ER      +   +  I D
Sbjct: 336 DPCELRIKNGAQAVIDLVERAIPLYEFVINHQLSKCPLGTFPERRAALAKILPFLKEISD 395

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           + LR +Y+  +  RL    ++             +    +       +  + +       
Sbjct: 396 RILRDHYTGLVCSRLGIDREQVDLLLPKLEHISSRFHPSKIPWQEDWKKKEFAAPTNPPD 455

Query: 478 KKPSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFL-FSDFVEQKYFLPE 535
            + +L E  ++ +L+ +  +L+      + D  + N  L  +   +      + +   P 
Sbjct: 456 ARFAL-EQQVIKSLLQYQHLLERDTAIAMCDYSFHNPTLSFIAQMIGMVIREQNRSISPA 514

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           E  + +      E    L        L       +   +    +  +  ++   LL    
Sbjct: 515 EFSKLIHSTVPSEYHATLQ------ALEVLPVPVSPDKLDSYLEGLVRSFENQHLLE--- 565

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            E    + Q++++   EK+  L   + E+  Q + +
Sbjct: 566 -EKALLLRQLSSEKSLEKSLELRQRIVELEKQRNSL 600


>gi|317475635|ref|ZP_07934896.1| DNA primase [Bacteroides eggerthii 1_2_48FAA]
 gi|316908205|gb|EFV29898.1| DNA primase [Bacteroides eggerthii 1_2_48FAA]
          Length = 697

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 161/699 (23%), Positives = 294/699 (42%), Gaps = 96/699 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++  +V   +R  N     Y   CPFHD+KTPSF+ + +KG  
Sbjct: 2   IDQATIDRILDAAQIVDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPTKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+      S+ E+++ LA   G+ +   +   E+K  +  +  L  +
Sbjct: 57  KCFACGKGGNVVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSNEEKLVQGERESLFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A D+F   L+N  D R     Y   RG     IE F+LGY  +S  ++ +   +KG+
Sbjct: 117 NQFARDYFQDILRNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDAMAQEALKKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +I+ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 177 KKEFLIKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+RL+ + +  + + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 286 ASSGTALTPGQIRLIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F++ I E                +   P +RAEL  +L   I+ I
Sbjct: 343 GDDPDSFARKHNSTEFQQFIQEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 402

Query: 416 KDQKLRYYYSQAIRDRL--------------QQLFQKYITEHSGYGRYWKKNARHRDQKG 461
            +  +R  Y +     L              +++  +   E +   R     +       
Sbjct: 403 PEAIVRDVYIKECAQLLRVEDKLLVSEVAKRREMQAEKRAEQTERERRNAVRSAEGAPNA 462

Query: 462 PSQRLMQSSLV----------------------------------KGKLSKKPSLREAAL 487
           P       +                                    +GK  ++    E  +
Sbjct: 463 PKVEGSNPATPTTTNGAALPTGEAAGYDTNAPFPPEDNYISFIPQEGKEGQEFYKYERLI 522

Query: 488 LLTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVE 528
           L  ++ +                   +++    +L   ++ + N   +++ +   +   +
Sbjct: 523 LQMIVRYGEKIMCNATNDEGQEVPISVIEYVINDLKEDELSFHNPLHRQILTEAAAHIHD 582

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ--QALALYK 586
           + +           E    +L  +L         + + ++  + D  + Y+   AL +  
Sbjct: 583 EGFTAERYFLAH-PEAAISKLSVELISNRYQLSKYHSKSQKIVTDEERLYELVPALMINF 641

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           ++ ++S + + +   +         EK   ++    E+ 
Sbjct: 642 KYAIVSEELKHMMSALQDPAVANNEEKCNAIMKRYSEMR 680


>gi|315651466|ref|ZP_07904489.1| DNA primase [Eubacterium saburreum DSM 3986]
 gi|315486286|gb|EFU76645.1| DNA primase [Eubacterium saburreum DSM 3986]
          Length = 588

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 147/626 (23%), Positives = 274/626 (43%), Gaps = 50/626 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y  D I ++     I ++I  YV   ++  N     Y   CPFH EK+PSF  + SK  +
Sbjct: 12  YSNDIIDEVRSANDIVDVISSYVKIQKKGAN-----YIGLCPFHSEKSPSFSVSPSKQLF 66

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C V GD ++F+      SF E++  LA    + LP      + +   +  ++ + +
Sbjct: 67  HCFGCGVGGDVITFIRQYENYSFSEALNLLAKRVNIELPQQSDSDKIQNDEKMIILEINK 126

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F+ +L +    +   Y   RG+D+  I  F LG++  +   L ++L+  G+ +  
Sbjct: 127 TAAKYFYETLFSEGGSKGLEYFKARGLDARDITHFGLGFSKKTPNDLYQYLKGMGYDDNI 186

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           + ++GL     +   + DRF NR++FPI  +  +VI FGGR +      KY+NSPETI F
Sbjct: 187 LKKSGL--INIDERGARDRFWNRVMFPIIDANSRVIGFGGRVI-GDGLPKYVNSPETIAF 243

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +NLY    A    +             F +L EGYMDV++L + G +N V+SLGTAL
Sbjct: 244 DKSRNLYGLNFAKRTKR------------DFFLLCEGYMDVIALHKGGFENSVASLGTAL 291

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T +  +LL + + ++VL +D D  G+ AA +AI L          V  + ++  +DPD F
Sbjct: 292 TAFHAKLLSRYTKKVVLTYDSDGAGINAAIRAIPL---LKEENINVKVLSMAPYKDPDEF 348

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I+  G   F+K I  +        +   +  + N PDER      +   ++   ++  R 
Sbjct: 349 IKNLGSEEFQKRIDTADNAFLWEVEIIKKGYNLNEPDERTNFYREVSRMLSTFSEKLERE 408

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+ A+ +RL   ++      + YG               +    +    K KL    + 
Sbjct: 409 NYTHAVANRLMIDYKSLFDMVNSYGF------------ASNTLKKEEQKEKKKLDDGYTK 456

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            +  LL  ++    +  +  + ++ + + +   + + + +F       +           
Sbjct: 457 AQGLLLTWIVEEVELFDKISKYISPVHFSDGFYRNVATRIFEKIKLGDFKFSNICDDYKE 516

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +    +LL ++             T  +  D ++   +++        L  ++  ++++ 
Sbjct: 517 DIEKQKLLSKILN-------TDLGTNLSDDDKKKAITESI--------LKIRQASLDEES 561

Query: 603 AQVTAKGEAEKTAILISILHEVHIQI 628
                  E +K     SIL ++ + +
Sbjct: 562 KNAKGIEEFQKIIEEQSILRKLRVDL 587


>gi|15837032|ref|NP_297720.1| DNA primase [Xylella fastidiosa 9a5c]
 gi|9105272|gb|AAF83240.1|AE003894_5 DNA primase [Xylella fastidiosa 9a5c]
          Length = 577

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 165/609 (27%), Positives = 278/609 (45%), Gaps = 47/609 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    I  ++G  +   R+       +Y + CPFHDE++ SF+ + +K F
Sbjct: 3   RIPDAFIDELLARTDIVEVVGSRLPLKRQGK-----EYASRCPFHDERSASFYVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   G  +SFL       F+++V  LA  AG+ +P    +    ++    L   +
Sbjct: 58  YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEIPRETQQKHAHQEDSRPLYAAL 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E A+ FF   L+N    ++  YL+ERG+D +    F++GYAPD    L++ L        
Sbjct: 118 EAASHFFQKHLENN--PKVQAYLNERGVDINTRTRFQIGYAPDGYSVLKDTLGTDERRIT 175

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +  AG+L   D     YD+FR+R++FPI   RG+VIAFGGR L K +S KYLNSPET L
Sbjct: 176 LLDRAGMLSKNDRDH-VYDKFRDRVMFPIFDRRGRVIAFGGRVLDKDKSPKYLNSPETTL 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHKG+ LY  +      Q   R          +I+VEGYMDV+SL Q G+   V++LGTA
Sbjct: 235 FHKGRELYGLWQVRQAHQNIER----------LIVVEGYMDVISLFQFGITQAVATLGTA 284

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T     LL++ +P +  CFDGD+ G +A ++A++ +L  +  G +  F+ L  GEDPD+
Sbjct: 285 TTVEHAELLFRNTPDVYFCFDGDNAGRKAGWRALESILPRMKEGRQAFFLFLPDGEDPDT 344

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +R  GK AF + + +++PL    +   + + + +T D +A L    +  +  I +    
Sbjct: 345 IVRKEGKNAFNERLKQAIPLSQFFFDALSSDIALHTLDGKARLAERARPLLMKIPEGAFN 404

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               Q +                             +   P      +S    +L  +  
Sbjct: 405 DLMRQRLAHLTGV-----------------------NIAHPGPAPAATSRPATRLPAQKR 441

Query: 482 LREAALLLTLINHPAILQEQYQ--ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                 +  ++  P++         LA        +      L     ++       + +
Sbjct: 442 NLIHTTIAIILQQPSLAMTLNTPYPLAINDLKQPGIAL-LLELLDLIHQRPEITTGALLE 500

Query: 540 RLCERGFGELLKQLDRQVR--DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              ER    LL+ L  Q    +   W+   +  +  +++   Q        + L++  ++
Sbjct: 501 HFTEREEYVLLQTLATQTMPGNTATWTQELQGAMTQMQKQLLQQRLDALHTKQLTQPLDD 560

Query: 598 IEK-QIAQV 605
           I+K ++ ++
Sbjct: 561 IDKYELREL 569


>gi|154486954|ref|ZP_02028361.1| hypothetical protein BIFADO_00787 [Bifidobacterium adolescentis
           L2-32]
 gi|154084817|gb|EDN83862.1| hypothetical protein BIFADO_00787 [Bifidobacterium adolescentis
           L2-32]
          Length = 695

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 142/705 (20%), Positives = 252/705 (35%), Gaps = 96/705 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I+ +     + +++   V           G Y   CPFHDEKTPSF    + G +
Sbjct: 5   IKKEDIEKVRATADLYDIVSATVTLKPSG----TGTYVGLCPFHDEKTPSFSVRPALGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
           +CF C + GD   ++       F ++V+ LA    + L               +  L+  
Sbjct: 61  HCFGCGLGGDVFGYVEHQENIDFRDAVELLADKYHIELHYDKADNVPAHTGSKRARLLEA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A ++F   L           LD R       + F  GYAP    +L  HL  KGF++
Sbjct: 121 NEAAQEYFVSQLMTKEALAARKLLDGRNFSQADCQRFGCGYAPQGWDNLVRHLAGKGFTQ 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238
           +++++AGL   G      YD FR R+ +PIR S G+ + FG R L + +  + KY+N+P+
Sbjct: 181 QEMLDAGLARQGQR--GVYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDTINAKYINTPD 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A + + K              ++VEGY DV+++  AG+   V++ 
Sbjct: 239 TQLYRKTQVLYGIDLAKSAIVKK----------RQAVIVEGYTDVMAMHLAGIDTAVATC 288

Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336
           GTA      +++ +L                        R+V  FDGD  G +AA  A  
Sbjct: 289 GTAFGAEHAKIIRRLIADDSLGAVQLVGPLKVEGQALSSRVVFTFDGDAAGQKAAIHAFG 348

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
           L         +    +     DP       G  A   LI  + PL D +     +     
Sbjct: 349 LDAAFST---QAFVAVAEDNLDPCDLRIKRGNEAVRALIANARPLYDFVIDSAIDRFDTT 405

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------- 449
               +      +   I  I+D+ L   YS+    R+         E +   R        
Sbjct: 406 YATGQMGAVKAVAPLIAQIRDRSLLDLYSRKAVRRIGVDLDIMQREVAYQRRKLNVRDED 465

Query: 450 -WKKNARHRDQKGPSQRLM-----QSSLVKGKLSKKPSLR-----------------EAA 486
            +    R ++  GPS          +        K    R                 E  
Sbjct: 466 AYAPKRRFQNNAGPSAEPAYAERGANPYANPAARKALEHRDAAEQSYYRIDDAVFICEQQ 525

Query: 487 LLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            + TLI  P  +    +  L    +     + L+  + +        +P+ +      + 
Sbjct: 526 FMATLIQVPLAVDPTMFASLTLSSFMTPVFRTLFQAVAAAGGLPGEDVPQGLWMHNLTKA 585

Query: 546 FGELLKQLDRQVRDAGLWSATTEAN-----------------IVDVRQGYQQALALYKRF 588
            G +L  +  ++    L    +EA+                      + Y   L +    
Sbjct: 586 GGPMLDSVINELAVMPLPLPPSEADTNRNAGESQEQSAQLRKPTQEERRYASELIVRLLD 645

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             + R+    ++++AQ+    +  +   L+  + ++      ++S
Sbjct: 646 TGIMRKIGAAQRRMAQLP---DGAEKIELLGQITKLETLRKDLQS 687


>gi|225350822|ref|ZP_03741845.1| hypothetical protein BIFPSEUDO_02396 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158278|gb|EEG71520.1| hypothetical protein BIFPSEUDO_02396 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 691

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 140/703 (19%), Positives = 253/703 (35%), Gaps = 95/703 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I+ +     + +++   V           G Y   CPFHDEKTPSF    + G +
Sbjct: 2   ILKEDIEKVRATADLYDIVSATVTLKPSG----TGTYVGLCPFHDEKTPSFSVRPALGVW 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
           +CF C + GD   ++       F ++V+ LA    + L       +K+     +  L+  
Sbjct: 58  HCFGCGLGGDVFGYVEHQENVDFRDAVELLADRYHIELRYDQSNAKKEHTGSKRARLLEA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A +FF   L           LD R       + F  GYAP    +L  +L  KGF++
Sbjct: 118 NEAAQEFFVSQLMTKDALAARKLLDGRNFSQADCQRFGCGYAPQGWDNLVRYLAGKGFTQ 177

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238
           +++++AGL          YD FR R+ +PIR S G+ + FG R L + +S+  KY+N+P+
Sbjct: 178 QEMLDAGLARQ--GQHGVYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDSISAKYINTPD 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A + + K              ++VEGY DV+++  AG+   +++ 
Sbjct: 236 TQLYRKNQVLYGIDMAKSAIVKK----------RQAVIVEGYTDVMAMHLAGIDTAIATC 285

Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336
           GTA      +++ +L                        RIV  FDGD  G +AA  A  
Sbjct: 286 GTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVEGQALSSRIVFTFDGDAAGQKAAIHAFG 345

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
           L         +    +     DP       G  A   LI  + PL D + K         
Sbjct: 346 LDSAFST---QAFVAVADDNLDPCDLRIKRGNEAVRALIDHAEPLYDFVIKTAIGRFDTT 402

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------- 449
               +      +   I  I+D+ L   YS+    ++         E     R        
Sbjct: 403 YTTGQMGAVKAVAPLIAQIRDRSLLDLYSRKAVRQIGVDLDIMQREVRDARRKLQVRDED 462

Query: 450 ---WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-------------------EAAL 487
               K+            R+ Q +      S + +L                    E   
Sbjct: 463 AYAPKRRFAGNAGAAVEPRMEQGTNPYANPSARKALEHRDAAEQSYYRIDDAVFICEQQF 522

Query: 488 LLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
           + TLI  P  +    +  L    +     + L+  + +         P+ +      +  
Sbjct: 523 MATLIQVPLAVDPTLFASLTLSSFMTPVFRTLFQAVAAAGGLPSADTPQGLWMHNLTKAG 582

Query: 547 GELLKQLDRQVRDAGLWSATTEANIV-----------------DVRQGYQQALALYKRFR 589
           G +L+ +  ++    L    ++ +                   D  + Y   L +     
Sbjct: 583 GPMLESVINELAVMPLPLPPSDTDAERASQQSQEGNVQLRKPTDDERRYASELIIRLLDT 642

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            + R+    ++++AQ+    +  +   L+  + ++      ++
Sbjct: 643 GIMRKIGADQRRMAQLP---DGAEKIELLGQITKLETLRKDLQ 682


>gi|333029277|ref|ZP_08457338.1| DNA primase [Bacteroides coprosuis DSM 18011]
 gi|332739874|gb|EGJ70356.1| DNA primase [Bacteroides coprosuis DSM 18011]
          Length = 687

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 163/662 (24%), Positives = 281/662 (42%), Gaps = 57/662 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  ++    I +++ ++V   +R  N     Y   CPFHDEKTPSF  + SK   
Sbjct: 26  IDQATIDRIMNAAQIVDVVSEFVTLRKRGVN-----YIGLCPFHDEKTPSFSVSPSKQIC 80

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
            CFSC   G+ + F+      ++ E+++ LA    + +   +   E+ +    +  +  +
Sbjct: 81  KCFSCGKGGNVVHFIMEHEQLNYYEALKFLAKKYNIEIQEKELTAEQIQARSTRESMFVV 140

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F   LKN  + +     Y  +RG     I  F+LGY+ D+R  L     +KGF
Sbjct: 141 NNFARDYFADILKNHPNGKSIGLAYFRQRGFRDDTIAKFQLGYSIDARSGLANEALKKGF 200

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
            +E +++ GL  + DN    +DRF +R+IFP+ +  G+V+AFGGRTL+       KY+NS
Sbjct: 201 KKEFLVKTGLCYEADNGDI-HDRFWSRVIFPVHTLSGKVVAFGGRTLNTENKRIAKYVNS 259

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ ++ K   LY  F A   + K          +    LVEGY DV+S+ QAGV+NVVS
Sbjct: 260 PESEIYTKSNELYGIFFAKQAIVK----------ADNCFLVEGYTDVISMHQAGVENVVS 309

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S GTALT  Q+RL+ + +  I + +DGD  G+RA+ + ID+    L  G  V  VLL  G
Sbjct: 310 SSGTALTTGQIRLIHRFTDNITVLYDGDMAGIRASLRGIDM---LLEEGMNVKVVLLPDG 366

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDSF R    T+F++ I ++             + +   P ++AEL   +   I+ I 
Sbjct: 367 EDPDSFARKQNATSFQEYIQQNEKDFIRFKTSLLIDEAGEDPIKKAELIADIVKSISVIP 426

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-----------RDQKGPSQR 465
           +  +R  Y +     L       + E +   R      R            + ++  S  
Sbjct: 427 EAIIRSVYIKETSQLLHISENILVAEVTKLKREELSKNRRILKREEAKEKEQQEEKSSSP 486

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHP-----------------AILQEQYQEL--A 506
                  +G+  ++    E  ++ T++ +                  ++++    +L   
Sbjct: 487 RTSYIPTEGQEGQEFYKFERLIIQTIVRYGNHAICNIVNSEGEEESISVIEYIINDLRQD 546

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWS 564
           ++ + N   + L        +E                    L   L  D+         
Sbjct: 547 ELEFYNPLHRTLLEESKRFIIEGHQGEISRFFLTHPNPEISRLAADLVSDKYQLSKYHTK 606

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           + T     +        L +  +  L+  + +   + + +     + EK   L+    E+
Sbjct: 607 SQTITTDEERLDELVPTLLINFKNALVLTEIKHSLQALQKPEIIRDPEKCNSLMEHYLEL 666

Query: 625 HI 626
             
Sbjct: 667 KQ 668


>gi|71274630|ref|ZP_00650918.1| DNA primase [Xylella fastidiosa Dixon]
 gi|170730895|ref|YP_001776328.1| DNA primase [Xylella fastidiosa M12]
 gi|71164362|gb|EAO14076.1| DNA primase [Xylella fastidiosa Dixon]
 gi|167965688|gb|ACA12698.1| DNA primase [Xylella fastidiosa M12]
          Length = 577

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 163/609 (26%), Positives = 275/609 (45%), Gaps = 47/609 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    I  ++G  +   R+       +Y + CPFHDE++ SF+ + +K F
Sbjct: 3   RIPDAFIDELLARTDIVEVVGSRLPLKRQGK-----EYASRCPFHDERSASFYVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   G  ++FL       F+++V  LA  AG+ +P    +    +     L   +
Sbjct: 58  YHCFGCGAHGTAINFLMNYDRLEFLDAVDELAKRAGMEIPRETQQKHAHQDDSRPLYAAL 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E A+ FF   L+N    ++  YL+ERG+D +    F++GYAPD    L++ L        
Sbjct: 118 EAASHFFQKHLENN--PKVQAYLNERGVDINTRTRFQIGYAPDGYSVLKDTLGTDERRIT 175

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +  AG+L   D     YD+FR+R++FPI   RG+VIAFGGR L K +S KYLNSPET L
Sbjct: 176 LLDRAGMLSKNDRDH-VYDKFRDRVMFPIFDRRGRVIAFGGRVLDKDKSPKYLNSPETTL 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHK + LY  +      Q   R          +I+VEGYMDV+SL Q G+   V++LGTA
Sbjct: 235 FHKSRELYGLWQVRQAHQNIER----------LIVVEGYMDVISLFQFGITQAVATLGTA 284

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T     LL++ +P +  CFDGD+ G +A ++A++ +L  +  G +  F+ L  GEDPD+
Sbjct: 285 TTVEHAELLFRNTPDVYFCFDGDNAGRKAGWRALESILPRMKEGRQAFFLFLPDGEDPDT 344

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +R  GK AF + + +++PL    +   + + + +T D +A L    +  +  I +    
Sbjct: 345 IVRKEGKNAFNERLKQAIPLSQFFFDALSSDIALHTLDGKARLAERARPLLMKIPEGAFN 404

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               Q +                             +   P      +S    +L  +  
Sbjct: 405 DLMRQRLAHLTGV-----------------------NIAHPGPAPAATSRPATRLPAQKR 441

Query: 482 LREAALLLTLINHPAILQEQYQ--ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                 +  ++  P++         LA        +      L     ++       + +
Sbjct: 442 NLIHTTIAIILQQPSLAMTLNTPYPLAINDLKQPGIAL-LLELLDLIHQRPEITTGALLE 500

Query: 540 RLCERGFGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              ER    LL+ L  Q        W+   +  +  +++   Q        + L++  ++
Sbjct: 501 HFTEREEYVLLQTLATQTMPGDTATWTQELQGAMTQMQKQLLQQRLNALHTKQLTQPLDD 560

Query: 598 IEK-QIAQV 605
           I+K ++ ++
Sbjct: 561 IDKYELREL 569


>gi|171779915|ref|ZP_02920819.1| hypothetical protein STRINF_01702 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281263|gb|EDT46698.1| hypothetical protein STRINF_01702 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 608

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 151/634 (23%), Positives = 268/634 (42%), Gaps = 48/634 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I ++   + I ++IG+ V+  R   N     Y   CPFH EKTPSF+  + K F
Sbjct: 17  AIDKELITEIKNSVNIVDVIGEVVNLTRAGRN-----YIGLCPFHKEKTPSFNIIEDKQF 71

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK-EKIQTDLIRL 120
           ++CF C   GD   FL      SF+ESV R+A  AG+PL V   + + K +     LI +
Sbjct: 72  FHCFGCGKSGDVYKFLEEYHQISFLESVHRVAERAGIPLQVETQQAQAKPQNPNQVLIDI 131

Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            + A  F++  LK  +  +    YL +RG+    I+ F +G +P+    L + L ++ + 
Sbjct: 132 HKDAAKFYNAVLKTTKEGQEAKAYLAQRGLTDELIDYFNIGLSPNEPDFLYQSLAKR-YE 190

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYLN 235
           E  ++ +GL    + +   YD F+NR++FP+    GQV+AF GR  +K +      KY N
Sbjct: 191 ENALMASGLFNLSERTNRVYDAFQNRIMFPLTDDNGQVVAFSGRIWTKEDLDSQQAKYKN 250

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +  T LF+K   LY+   A   + K             + L+EG+MDV++  +AG++N V
Sbjct: 251 TRSTALFNKSYELYHLDKARPVMSKK----------HEVYLMEGFMDVIAAYRAGIENAV 300

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   +R L + + +++L +DGD+ G  A  K+++L+         V  V +  
Sbjct: 301 ASMGTALTPEHVRHLKRYAKKVILTYDGDNAGQNAIAKSLELL-----KDFSVEIVRVPE 355

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD FI+     A   L+  S       +    +  + +           +   I   
Sbjct: 356 QMDPDEFIQKNSPQALANLLENSRISSTEFFIHYLKPENTDNLQAEIAYVEKISRIIAQS 415

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                +  Y   + D L       + +     R   ++A     +   QR+    L   K
Sbjct: 416 PSITAQNSYINMVADLLPDFDYYQVEQSVNSERLQNRSA--LQSEAAKQRVTVVELPISK 473

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E+ L+  L+ H  +L E   +  +  +D  ELQ L+  L             
Sbjct: 474 NVSAIMKAESQLMQRLLTHDYLLNEFRNQ-EEFTFDTQELQTLYDLLMQQGE-------- 524

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                +      +L  +  +        +   +    ++ +  Q+   L +      R  
Sbjct: 525 -----VTSYDLAQLDDRTRQMYYQVLEENLPEDVAPNEIEEIIQKRNRLLQ-----ERDL 574

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++  K I + +  G+ +     +  L     ++ 
Sbjct: 575 QKQSKLIRESSNLGDVDAALEALENLIAQKRKME 608


>gi|227518712|ref|ZP_03948761.1| DNA primase [Enterococcus faecalis TX0104]
 gi|227073892|gb|EEI11855.1| DNA primase [Enterococcus faecalis TX0104]
          Length = 560

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 155/575 (26%), Positives = 264/575 (45%), Gaps = 41/575 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++     I ++IGQYV   +   N     Y   CPFH+E++PSF   + K  
Sbjct: 4   RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           ++CF C   G   +FL  + G SF ESV+R+A +  + +        +     + + +  
Sbjct: 59  FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L++L   A + +HH L      +    YL ERG+    IE F++G+AP  R  L +  + 
Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230
           +   E     +GL +  DN  T  DRF  R++FPI   +G VIAF GR L        E 
Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF+K + L+NF  A   ++K           + ++L EG+MDV++  Q+G
Sbjct: 238 PKYLNSPETTLFNKRETLFNFDRARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V++ V+S+GT+LT  Q+R L +++  +V+C+DGD+ G++A  +AI L+  +      +  
Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           V +    DPD ++R YG  AF+ L       +           R+ N   E+ +    L 
Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460
             + +++    R  Y   I    Q        + +   +  +   R   Q+         
Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465

Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                   ++ +       +    E +LL  L+N   + Q   Q+L D  + ++E Q+L+
Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTI-QQLPDFSFAHDEYQELY 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             L S     + F   +    L +    +L  ++ 
Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA 559


>gi|55823394|ref|YP_141835.1| DNA primase [Streptococcus thermophilus CNRZ1066]
 gi|55739379|gb|AAV63020.1| DNA primase [Streptococcus thermophilus CNRZ1066]
          Length = 603

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 155/644 (24%), Positives = 262/644 (40%), Gaps = 56/644 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I+D+     I ++IG+ V  +R   N     Y   CPFH EKTPSF+  + + 
Sbjct: 1   MAIDKTLIEDIKSSTNIVDVIGEVVSLNRAGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   GD   FL      SF ESV+ LA   G+ + +  P+  +++         
Sbjct: 56  FYHCFGCGKSGDVFKFLEEYRQISFQESVKVLADRLGIAVSIDVPRQVQRQNSPNQAFYD 115

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L E A  F+H  L      +    YL ERG+    ++ F++G +PD    L + + +K  
Sbjct: 116 LHEDALKFYHAVLMTTKIGEAARAYLYERGMTDELLKTFQIGLSPDEPDYLYQSVSKKYD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234
            E              +   +D F+NR++FP+++  G+ I F GR  +K +      KY 
Sbjct: 176 EEVLTESGLFN--LSENNRIFDTFKNRIMFPLKNEFGKTIGFSGRVWTKEDIEKGQAKYK 233

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+  T +F+K   LY+   A   +QK          +  + L+EG+MDV++  +AG  N 
Sbjct: 234 NTRATRIFNKSYELYHLDQAKPVIQK----------THEVYLMEGFMDVIAAYRAGHVNA 283

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +  L KL+ +IVL +DGD PG  A  K+++L+    +       V + 
Sbjct: 284 VASMGTALTPEHVNRLRKLTKKIVLTYDGDKPGQNAIAKSLELLSDFQVD-----IVKIP 338

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD +++   + A  KL+VES       W  + +  + +           +   I  
Sbjct: 339 DSMDPDEYLQKTSEKALGKLLVESRISDVEFWIGQLKPTNVDNLQAEIAYVEQIAKIIAK 398

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---- 470
                 +  Y   + D L       + +     R   +N +       S    +SS    
Sbjct: 399 SPSVTAQNSYISKVADLLPDFDFFQVEQAVNNARLTMRNQQMAQLSAASNSAYESSASGF 458

Query: 471 -----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                L            E  L   ++NHP IL +      D  +   EL++L+  L  D
Sbjct: 459 RGTVKLPSTPKITGLRRAENQLFHRMLNHPMILNDYRMR-DDFFFQTPELEELFQILKRD 517

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
                         ++       L +++              E N+ +V     QA+   
Sbjct: 518 G-------------QIDTVALSVLSQEVQTAYYQVLEEILPPETNLEEV-----QAIEER 559

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +   L  +   +  KQI + +  G+ +     + +L      + 
Sbjct: 560 RNHFLREQDFRKQSKQIRESSNHGDVDAAVEALQMLIAQKRDME 603


>gi|87119777|ref|ZP_01075674.1| DNA primase [Marinomonas sp. MED121]
 gi|86165253|gb|EAQ66521.1| DNA primase [Marinomonas sp. MED121]
          Length = 651

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 171/675 (25%), Positives = 296/675 (43%), Gaps = 78/675 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL  + I+++I   +   +   N     Y A CPFH+EK+PSF  N +K F
Sbjct: 4   RIPDQFIDELLARVDITDIISSRLTLRKTGQN-----YSALCPFHNEKSPSFSVNPAKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C   G+ +SF+       F+E+++ LA  AG+ +P        + +   DL+  +
Sbjct: 59  YYCFGCGAGGNAISFVMENDHLDFVEAIELLAKDAGMEVPREQG-APDRYEQNADLLNQL 117

Query: 122 EVATDFFHHSLKNARDKRLH--YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             +  FF   L     K     Y   ERG+     ++F LG+AP    +L + L + G  
Sbjct: 118 TQSASFFQKQLIENEQKTKATDYLAKERGLSGQIAKVFGLGFAPPGWDNLLQTLGKSGDQ 177

Query: 180 EEKIIEAGLLI-DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +E+++ AG+LI   D +   YDRFR+R++FPIR SRG+VIAFGGR     E  KYLNSPE
Sbjct: 178 KEQLLLAGMLIEKKDQAGHFYDRFRDRIMFPIRDSRGRVIAFGGRAF-GDEKPKYLNSPE 236

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K + LY  + A                   I++VEGYMDV+ L Q G+ N V++L
Sbjct: 237 TPVFQKSQELYGLYEAKQ----------NTQQLDHILIVEGYMDVIVLAQHGITNAVATL 286

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT++    ++ L+KL  ++ LCFDGD  G  AA + ++  L  +  G +V F+ L  GED
Sbjct: 287 GTSVNSNHIKKLFKLVSKVTLCFDGDKAGRAAAIRGLEATLPVMQDGKQVRFLFLPEGED 346

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK AF + + +S  L  +L++      +    +  A+   ++ + I  + + 
Sbjct: 347 PDSLVRDIGKDAFTEKLEDSSSLSHVLFEHARNQVTLADEEGEAQFAQNVMSQIQALPEI 406

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP---------------- 462
             +    + + ++      K   +   Y R  +   +    +                  
Sbjct: 407 TYKSVLLKQLEEQAGIDTSKLSAQKPKYQRTAEPAQQQHYDEAQYTDYDDIPLPEHLAYD 466

Query: 463 -------------------SQRLMQSSLVKGKLSKKPSL----------REAALLLTLIN 493
                               ++  + S  KGK   +  L           E A+L  L+ 
Sbjct: 467 HDEPHYDYSSTPAETGYQTKKKNSKKSFGKGKWQDQEELPPPMAIALTQTEHAILCLLL- 525

Query: 494 HPAILQEQYQELADIRYDNNELQ-KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           HP +  +   E+++      +L  +++S ++  F +        +      +   E +  
Sbjct: 526 HPNVAADI--EVSEPLLRQPDLDMQIFSKVWRFFNKHSDKNLGHLLGNWQNQEQTEKIYY 583

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           L           A T++ +++ +Q  +  +A  +    L+     ++ +  +        
Sbjct: 584 LLN------HQDAHTKSKLINAKQEVKDMIASKEESLGLNNAISRLKSKGNETIKDNN-- 635

Query: 613 KTAILISILHEVHIQ 627
            +   +  L E   +
Sbjct: 636 -SREELRRLIEQMRK 649


>gi|149376142|ref|ZP_01893907.1| DNA primase (bacterial type) [Marinobacter algicola DG893]
 gi|149359547|gb|EDM48006.1| DNA primase (bacterial type) [Marinobacter algicola DG893]
          Length = 577

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 177/611 (28%), Positives = 289/611 (47%), Gaps = 40/611 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ F++DLL  + ++ LIG  +   +   N     Y A CPFHDEKTPSF+    KGFY
Sbjct: 5   IPQRFVEDLLDRVDLAELIGSRITLKKAGGN-----YKARCPFHDEKTPSFNVRPDKGFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD +SF+    G  F ++V+ LA  AG+ +P  D    ++ +    L   ++
Sbjct: 60  HCFGCGAHGDAISFVREFDGLGFTDAVEELARRAGMEVPY-DQSARQEMQQARTLTDALD 118

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A+ F+  +LK  + +    YL +RG+D   IE ++LGYAP +  +L +   +    + +
Sbjct: 119 YASRFYQSALKGQQGEFARDYLKQRGLDDSIIEQYQLGYAPGTGTALFDSASR----DLQ 174

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                     D      D FRNR++FPIR+SRG+ IAFGGRTL   +  KY+NSPE+ +F
Sbjct: 175 GPLVETGTVSDRYGRPRDLFRNRVMFPIRNSRGRTIAFGGRTL-GDDKAKYINSPESDVF 233

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           HK + +Y  + A   +++  R          +++VEGYMDV++L Q G+   V++LGTA 
Sbjct: 234 HKSREIYGLYEAKQSIRQLDR----------LLVVEGYMDVIALAQNGIHFAVATLGTAT 283

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
            +  L  L K    +V CFDGD  G RAA KA++  L  L  G  + F+++  GEDPD+ 
Sbjct: 284 NQDSLSALLKQVRHLVFCFDGDQAGYRAADKALENALELLTDGLHLQFLMMPDGEDPDTL 343

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +R  G  AF++ I  + PL   L+ R++E      P++R EL+  ++  +  +    LR 
Sbjct: 344 VRKEGPDAFQERINGATPLSRYLFNRQSEGLDLTLPEDRGELKARVEPLLKKMPRSTLRD 403

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                +                     W+   +   + G  +R +Q   +  KLSK    
Sbjct: 404 AMWHEMLRLCG-----------NNRGDWQNRRQPNGKGGYGERRVQEQRIDVKLSKDT-- 450

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
               L L L+  P +  E  + L        +  +   ++    ++ +  L  E+     
Sbjct: 451 ---QLCLALLEAPDMASEIAE-LCRSSRQYRQAGQFAGWILERAIKDRRSLVRELATDNR 506

Query: 543 ERG-FGELLKQLDRQ-VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            R  F  L   ++    R+  L  A    N        Q+  +L    R L+    E  +
Sbjct: 507 AREQFYNLFDGIEHIPAREQTLAGAREMLNPNREVARKQRLTSLLSEKRSLADLSAEERQ 566

Query: 601 QIAQVTAKGEA 611
           ++  +T + + 
Sbjct: 567 ELKALTGQNDD 577


>gi|28199524|ref|NP_779838.1| DNA primase [Xylella fastidiosa Temecula1]
 gi|182682257|ref|YP_001830417.1| DNA primase [Xylella fastidiosa M23]
 gi|28057639|gb|AAO29487.1| DNA primase [Xylella fastidiosa Temecula1]
 gi|182632367|gb|ACB93143.1| DNA primase [Xylella fastidiosa M23]
 gi|307578532|gb|ADN62501.1| DNA primase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 577

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 163/609 (26%), Positives = 276/609 (45%), Gaps = 47/609 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    I  ++G  +   R+       +Y + CPFHDE++ SF+ + +K F
Sbjct: 3   RIPDAFIDELLARTDIVEVVGSRLPLKRQGK-----EYASRCPFHDERSASFYVSPTKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   G  ++FL       F+++V  LA  AG+ +P    +    +     L   +
Sbjct: 58  YHCFGCGAHGTAINFLMNYDRLEFLDAVDELAKRAGMEIPRETQQKHAHQDDSRPLYAAL 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E A+ FF   L+N    ++  YL+ERG+D +    F++GYAPD    L++ L        
Sbjct: 118 EAASHFFQKHLENN--PKVQAYLNERGVDINTRTRFQIGYAPDGYSVLKDTLGTDERRIT 175

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +  AG+L   D     YD+FR+R++FPI   RG+VIAFGGR L K +S KYLNSPET L
Sbjct: 176 LLDRAGMLSKNDRDH-VYDKFRDRVMFPIFDRRGRVIAFGGRVLDKDKSPKYLNSPETTL 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHK + LY  +      Q   R          +I+VEGYMDV+SL Q G+   V++LGTA
Sbjct: 235 FHKSRELYGLWQVRQAHQNIER----------LIVVEGYMDVISLFQFGITQAVATLGTA 284

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T     LL++ +P +  CFDGD+ G +A ++A++ +L  +  G +  F+ L  GEDPD+
Sbjct: 285 TTVEHAELLFRNTPDVYFCFDGDNAGRKAGWRALESILPRMKEGRQAFFLFLPDGEDPDT 344

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +R  GK AF + + +++PL    +   + + + +T D +A L    +  +  I +    
Sbjct: 345 IVRKEGKNAFNERLKQAIPLSQFFFDTLSSDIALHTLDGKARLAERARPLLMKIPEGAFN 404

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               Q +                             +   P      +S    +L+ +  
Sbjct: 405 DLMRQRLAHLTGV-----------------------NIAHPGPATAATSRPATRLTAQKR 441

Query: 482 LREAALLLTLINHPAILQEQYQ--ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                 +  ++  P++         LA        +      L     ++       + +
Sbjct: 442 NLIHTTIAIILQQPSLAMTLNTPYPLAINDLKQPGIAL-LLELLDLIHQRPEITTGALLE 500

Query: 540 RLCERGFGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              ER    LL+ L  Q        W+   +  +  +++   Q        + L++  ++
Sbjct: 501 HFTEREEYVLLQTLATQTMPGDTATWTQELQGAMTQMQKQLLQQRLNALHTKQLTQPLDD 560

Query: 598 IEK-QIAQV 605
           I+K ++ ++
Sbjct: 561 IDKYELREL 569


>gi|312866185|ref|ZP_07726406.1| DNA primase [Streptococcus downei F0415]
 gi|311098589|gb|EFQ56812.1| DNA primase [Streptococcus downei F0415]
          Length = 597

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 147/638 (23%), Positives = 262/638 (41%), Gaps = 50/638 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M + +  I ++   + I ++IG+ V   +   N     Y   CPFH EKTPSF+  + K 
Sbjct: 1   MAFDKSLISEIKNSVNIVDVIGEVVKLTKSGRN-----YLGLCPFHQEKTPSFNVIEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIR 119
           F++CF C   GD   FL      +F+ESV+ L+   G+ L   V  + + K+     L  
Sbjct: 56  FFHCFGCGKSGDVFKFLEEYRQITFMESVKILSERIGMDLALEVPNQTQAKQNPHQKLFD 115

Query: 120 LIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + + A+ F+   LK  +  +    YL +RG+D   I+ F +G APD             +
Sbjct: 116 INQDASKFYQAVLKTTKVGEVARNYLYQRGLDDQMIDYFNIGLAPDESN-YLYQSLSPRY 174

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES----VKYL 234
            E+ I+ +GL      + + +D FRNR+IFP+    G VI F GR  ++ +      KY 
Sbjct: 175 DEDTILNSGLFNLS-EAGSIFDSFRNRIIFPLTDENGHVIGFSGRIWTQADQDRKEAKYK 233

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+  T +F+K   LY+   A   + K          S  + L+EG+MDV++  +AG++N 
Sbjct: 234 NTRATTIFNKSYELYHLDKARPVMAK----------SHEVYLMEGFMDVIAAYRAGIENA 283

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   ++ L K + +++L +DGD  G  A  K++D++         V  V + 
Sbjct: 284 VASMGTALTPEHVKHLKKFTKKVILTYDGDKAGQNAIAKSLDILQ-----DLTVEIVRIP 338

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD FI+        KL+ +S       W +     + +           +   I  
Sbjct: 339 NQMDPDEFIKANSADELAKLLTQSRISSTEFWIQYLRPENVDNLQTEIAYVERIAKIIAG 398

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR---YWKKNARHRDQKGPSQRLMQSSL 471
           +     +  Y   + + L       + +     R            D  G + R + + L
Sbjct: 399 VTSITAQNTYINRVAEDLPDFDYFQVEQSVNNERLKLRANAGNTQSDPYGQASRPILTEL 458

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
              K        E  L   L+ +  +L +      D  +++ +L+ L+  L     E   
Sbjct: 459 PVSKTLSAVQRAENQLFYRLLQYDYLLNDFRNR-EDFAFESPQLEALFQ-LLRQKGEISD 516

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               E+   L +  +    + L +++ +  +          +    Y+Q   L KR ++ 
Sbjct: 517 LDLAEMTDDLRQAYYSVQEENLPQEMSEGEISGL------EERIARYRQEEELRKRSKI- 569

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                     I   +  G+ E+  + +         + 
Sbjct: 570 ----------IRDSSNHGDDERAIMELQAFIAQKRNME 597


>gi|87302210|ref|ZP_01085035.1| DNA primase [Synechococcus sp. WH 5701]
 gi|87283135|gb|EAQ75091.1| DNA primase [Synechococcus sp. WH 5701]
          Length = 690

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 169/641 (26%), Positives = 288/641 (44%), Gaps = 62/641 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ +     I +++G++V   ++       ++   CPFHD+K+PS   + +K F
Sbjct: 9   RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDKSPSMTVSPAKQF 63

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           YYCFSC   G+ + FL  L   SF E V  LA    +P+  +D   +++ +     +  L
Sbjct: 64  YYCFSCGAGGNAIKFLMELQRISFSEVVLDLARKYQLPVETLDGPQQERLRRQLSRREAL 123

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
           +R + +A  +F   L++        YL + RG+    I+ F LGYAP+    L  HL Q 
Sbjct: 124 LRALGLAAGWFRSQLRSPEGAGALAYLSKERGLSEGTIDAFDLGYAPERWDGLLNHLGQV 183

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +  + E +  AGL++        YDRFR+R++ PIR  +G+VI FGGR+L  GE  KYLN
Sbjct: 184 ENLAPELLEAAGLVVPRKGGDGFYDRFRHRVMVPIRDRQGRVIGFGGRSLDGGEP-KYLN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK+L+    A N ++K              ++VEGY DV++L  AG+ N V
Sbjct: 243 SPETEVFEKGKHLFGLDRASNAIRKD----------DQAVVVEGYFDVIALHAAGITNAV 292

Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352
           +SLGTAL+  Q+  L +     R+VL FD D  G+RAA +AI  V    + G   +  + 
Sbjct: 293 ASLGTALSSQQITQLCRCCDSRRLVLNFDTDGAGVRAAQRAIGAVEQQALQGQLELRVLH 352

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+DPD F++ +G   +  L+  +   +D   ++  E +     D+  +    L   +
Sbjct: 353 LPAGKDPDEFLQQHGAGEYRALLERAPLWLDWQIEQALEGKDLARSDQFQQAVASLVELL 412

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    +R +Y Q + +RL     +   +     R   K  R   +    ++  +  L 
Sbjct: 413 GKLPQSAVRSHYLQQVAERLSGGQARLAQKLEEDLRQQVKGERWHGRASRWEQPGEIGLR 472

Query: 473 KGKLSKKPSLREAALLLTLIN---HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE- 528
                      EA LL   ++   H   ++ + ++     +     + LW+ +     + 
Sbjct: 473 --------ERAEAELLRLYLHAGRHRGAIRRELRQRELEDFAIAHHRLLWASISELEEDN 524

Query: 529 ---------------QKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEAN 570
                                 ++ + L +R      ELL +L   +  + L        
Sbjct: 525 LGVGRLEAINRGSDPGDDLADLDLPRLLSDRLLVEESELLNRLTPLLEPSELQRMALAEP 584

Query: 571 IVDVR--QGYQQALALYKRFRLL-----SRQKEEIEKQIAQ 604
           ++ +R      +     KR R L     S++ E +E+ IA+
Sbjct: 585 LLQLRGTTAVLERQRSLKRCRHLLDAWGSQRLETLERCIAR 625


>gi|228477004|ref|ZP_04061642.1| DNA primase [Streptococcus salivarius SK126]
 gi|228251023|gb|EEK10194.1| DNA primase [Streptococcus salivarius SK126]
          Length = 603

 Score =  333 bits (852), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 153/644 (23%), Positives = 265/644 (41%), Gaps = 56/644 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I+D+     I ++IG+ V  +R   N     Y   CPFH EKTPSF+  + + 
Sbjct: 1   MVIDKALIEDIKSSTNIVDVIGEVVSLNRAGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   GD   FL      SF ESV+ LA   G+ + +  P+  +++         
Sbjct: 56  FYHCFGCGKSGDVFKFLEEYRQISFQESVKVLADRLGIAVRIDAPRQAQQQNSPNQAFYD 115

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L E A  F+H  L      +    YL ERG+    ++ F++G APD    L + + +K  
Sbjct: 116 LHEDALKFYHAVLMTTKIGEAARAYLYERGMTDDLLKTFQIGLAPDEPDYLYQSVSKKYD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234
            E              S   +D F+NR++FP+++  G+ I F GR  +K +      KY 
Sbjct: 176 EEVLTESGLFN--LSESNRLFDTFKNRIMFPLKNEFGKTIGFSGRVWTKDDIEKGQAKYK 233

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+  T +F+K   LY+   A   +QK          +  + L+EG+MDV++  +AG  N 
Sbjct: 234 NTRATRIFNKSYELYHLDQAKPVIQK----------THEVYLMEGFMDVIAAYRAGHVNA 283

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +  L KL+ +IVL +DGD  G  A  K+++L+    +       V + 
Sbjct: 284 VASMGTALTPEHVNRLRKLTKKIVLTYDGDKAGQNAIAKSLELLSDFQVD-----IVKIP 338

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD +++   + A  KL+VES       W  + +  + +           +   I  
Sbjct: 339 DNMDPDEYLQKTSEEALGKLLVESRISDVEFWIGQLKPANVDNLQAEIAYVEQIAKIIAK 398

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---- 470
                 +  Y   + D L       + +     R   +N +       S    +SS    
Sbjct: 399 SPSVTAQNSYISKVADLLPDFDFFQVEQAVNNERLTMRNQQTAQLSAASNSAYESSASGF 458

Query: 471 -----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                L            E  L   ++NHP IL +      +  +   EL++L+  +   
Sbjct: 459 RGTVKLPSTPKITGLRRAENQLFHRMLNHPMILNDYRMR-EEFFFQTPELEELY-HILKQ 516

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
             +        + Q +    + ++L+++              E ++ +V     QA+   
Sbjct: 517 DGQIDTVALSLLSQEVQTAYY-QVLEEI-----------LPPETSLEEV-----QAIEER 559

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +   L  +   +  KQI + +  G+ +     + +L      + 
Sbjct: 560 RNHLLREQDFRKQSKQIRESSNHGDVDAAVEALQMLIAQKRDME 603


>gi|153953575|ref|YP_001394340.1| DNA primase [Clostridium kluyveri DSM 555]
 gi|219854197|ref|YP_002471319.1| hypothetical protein CKR_0854 [Clostridium kluyveri NBRC 12016]
 gi|146346456|gb|EDK32992.1| DnaG [Clostridium kluyveri DSM 555]
 gi|219567921|dbj|BAH05905.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 590

 Score =  333 bits (852), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 166/630 (26%), Positives = 283/630 (44%), Gaps = 41/630 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D I+ +     I ++I + V   R   N     Y   CPFH+EKTPSF  +  K  Y
Sbjct: 2   ISEDVIQRIKEENDIVDVISEKVKLKRSGRN-----YLGLCPFHNEKTPSFSVSRDKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ ++F+      +F+E+++ LA    + + +   K  +K     +L +L  
Sbjct: 57  KCFGCGEAGNVITFIMKSQNLNFLEAIELLADRVNIDIDLSKNKNNRK-STFENLYKLNV 115

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F +SL   +  +   YL  RGI  H I  F LGY+ DS   +   L+ KGF+E  
Sbjct: 116 EAARYFFYSLNKNKSAKS--YLLNRGITEHTIIKFGLGYSNDSWNHMMNFLKDKGFTELD 173

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++  GL+I        YDRFRNR++FP+   RG++I FGGR L   +  KYLNSPET LF
Sbjct: 174 MVSNGLIIKS-EKGNYYDRFRNRIMFPVFDYRGKIIGFGGRVLDNSKP-KYLNSPETPLF 231

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG NLY    A+             N+S  +I+VEGYMD +SL Q G++NVV+SLGTAL
Sbjct: 232 KKGVNLYGLNFAIKS-----------NTSRTLIIVEGYMDCISLHQYGIKNVVASLGTAL 280

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q +L+ K   +++L +D D  G  A  +++ +       G  V  + + +G+DPD F
Sbjct: 281 TVNQAKLMAKYVDKVILSYDADKAGEIATLRSMSI---LKNVGLEVKILSIPQGKDPDEF 337

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           IR  G+ +F +LI E+  L++   K   +N  FN   + A+    +   +  + +   R 
Sbjct: 338 IRNNGRESFMELIQEADDLIEYRIKNIKKNIDFNNSQDIAKYTEKVLKILVEL-NPIERE 396

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            + + + +      Q      +        NA+   +K  +  +      K  L      
Sbjct: 397 IHIKKLWEDTGIKEQILHDMLNI-------NAQKNVKKDVNMNIDMGFGQKLYLEPAYLK 449

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A L  ++ +    +    ++ +        +K++ ++       KY   ++  + + 
Sbjct: 450 AERAFLKLILENDEAFKYSLNKIGNGELILESHKKIYEYIIE---NMKYDDAQKRKKYIE 506

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +        +D       +     + +  +        +    +   L   K+ I  +I
Sbjct: 507 LKCVD-----IDTSKEWINIMETEVQYDNEEWMNMLHNFIN-RIKKYKLEEYKKNIIGKI 560

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +  +KG  E++      L  +  +I +I+
Sbjct: 561 KEYESKGNLEESLKFAQQLMGIQKRIGEIQ 590


>gi|322516347|ref|ZP_08069272.1| DNA primase [Streptococcus vestibularis ATCC 49124]
 gi|322125080|gb|EFX96473.1| DNA primase [Streptococcus vestibularis ATCC 49124]
          Length = 603

 Score =  333 bits (852), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 154/644 (23%), Positives = 267/644 (41%), Gaps = 56/644 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I+D+     I ++IG+ V  +R   N     Y   CPFH EKTPSF+  + + 
Sbjct: 1   MVIDKTLIEDIKSSTNIVDVIGEVVSLNRAGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-EKKEKIQTDLIR 119
           FY+CF C   GD   FL      SF ESV+ LA   G+ + +  P+  +++         
Sbjct: 56  FYHCFGCGKSGDVFKFLEEYRQISFQESVKVLADRLGIAVSIDVPRQVQQQNSPNQTFYD 115

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L E A  F+H  L      +    YL ERG+    ++ F++G APD    L + + +K  
Sbjct: 116 LHEDALKFYHAVLMTTKIGEAARAYLYERGMTDDLLKTFQIGLAPDEPDYLYQSVSKKYD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234
            E              S   +D F+NR++FP+++  G+ I F GR  +K +      KY 
Sbjct: 176 EEVLTESGLFN--LSESNRLFDTFKNRIMFPLKNEFGKTIGFSGRVWTKEDIEKGQAKYK 233

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+  T +F+K   LY+   A   +QK          +  + L+EG+MDV++  +AG  NV
Sbjct: 234 NTRATRIFNKSYELYHLDQAKPVIQK----------THEVYLMEGFMDVIAAYRAGHVNV 283

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +  L KL+ +IVL +DGD  G  A  K+++L+    +       V + 
Sbjct: 284 VASMGTALTPEHVNRLRKLTKKIVLTYDGDKAGQNAIAKSLELLSDFQVD-----IVKIP 338

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD +++   + A  KL+VES       W  + +  + +           +   I  
Sbjct: 339 DNMDPDEYLQKTSEEALGKLLVESRISDVEFWIGQLKPANVDNLQAEIAYVEQIAKIIAK 398

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---- 470
                 +  Y   + D L       + +     R   +N +       S    +SS    
Sbjct: 399 SPSVTAQNSYISKVADLLPDFDFFQVEQAVNNERLTMRNQQTAQLSAASNSAYESSASGF 458

Query: 471 -----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                L            E  L   ++NHP IL +      +  +   EL++L+  +   
Sbjct: 459 RGTVKLPSTPKITGLRRAENQLFHRMVNHPMILNDYRMR-EEFFFQTPELEELY-HILKQ 516

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
             +        + Q +    + ++L+++              E ++ +V     QA+   
Sbjct: 517 DGQIDTVALSLLSQEVQTAYY-QVLEEI-----------LPPETSLEEV-----QAIEER 559

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +   L+ +   +  KQI + +  G+ +     + +L      + 
Sbjct: 560 RNHFLMEQDFRKQSKQIRESSNHGDVDAAVEALQMLIAQKRDME 603


>gi|322385456|ref|ZP_08059100.1| DNA primase [Streptococcus cristatus ATCC 51100]
 gi|321270194|gb|EFX53110.1| DNA primase [Streptococcus cristatus ATCC 51100]
          Length = 600

 Score =  333 bits (852), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 138/634 (21%), Positives = 256/634 (40%), Gaps = 48/634 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + K FY
Sbjct: 8   LDKEMISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 62

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+ L          ++      L  +
Sbjct: 63  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGISLGMERAGADRPRQAHPHQALYDI 122

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    I+ F++G AP+    L + +  K   
Sbjct: 123 HTEAAKFYHAVLMTTKIGEEARAYLYQRGLTDEVIKHFQIGLAPNEGNYLHKSMAGKFDE 182

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK----GESVKYLN 235
              +      +  +N    YD F+NR++FP+ + +GQV+AF GR         ++ KY N
Sbjct: 183 STIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDKGQVVAFSGRIWQDSEAGSQTAKYKN 240

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  + L+EG+MDV++  +AGV+N V
Sbjct: 241 SRSTPIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGVENAV 290

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   ++ L +   +I+L +DGD  G  A  KA++ +         V  V    
Sbjct: 291 ASMGTALTPEHVQHLRRYCKKIILTYDGDKAGQAATAKALEEL-----RDMSVEIVSFPD 345

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD FI         + + ++         R  +  +      + E    +   I   
Sbjct: 346 DMDPDEFIAKNSAEELRQFLTKTRISDVEFLLRYLKPDNIENLQAQIEFVERMAPIIAQT 405

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +    +  Y   + + L     + +       R  ++++R   Q    +R +   L   K
Sbjct: 406 QSITAQNSYIYMLAELLPDFDYQQVENTVNNSRLAERSSRSGQQSESLRRPVLVDLPLSK 465

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E  +L  ++++P +L           +            F     Q+ +   
Sbjct: 466 QLSRLIKAEIHILYRMVHNPLVLNSYR---LRTDFA-----------FDTAELQELYELL 511

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             +  +  +    L +++ +            E    ++  G    + L +   LL +  
Sbjct: 512 LANGEVTSQDLSSLPERVQQLWYR-----MLEEDLPEEMEDGELAEVELTRERELLRKNN 566

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K++ +    G+     + +  L     ++ 
Sbjct: 567 QLISKKVREALHTGDENAAILEVERLIAQKRRME 600


>gi|170077959|ref|YP_001734597.1| DNA primase [Synechococcus sp. PCC 7002]
 gi|169885628|gb|ACA99341.1| DNA primase [Synechococcus sp. PCC 7002]
          Length = 644

 Score =  333 bits (852), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 146/656 (22%), Positives = 268/656 (40%), Gaps = 50/656 (7%)

Query: 1   MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           M YP    + I+++   + I+ ++  YV   +R       D    CPFHDEKTPSF  + 
Sbjct: 1   MAYPSIHPETIEEIRAKVDIAEVVSDYVVLKKRGK-----DLLGLCPFHDEKTPSFTVSP 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKI 113
           +K FY+CF C   G+ + FL  +    F + V  LA    VP+    P    +I+++  +
Sbjct: 56  TKQFYHCFGCGAGGNAIKFLMEINKSPFAQVVLDLAQRYQVPVKTLEPEQHQEIQRELSL 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172
           +  L  ++ +A DF+ +SL+    +    Y  ++R +    I+ F LGYAP    +L  +
Sbjct: 116 KEQLYEIVAIANDFYQYSLRQPEGQTALAYVREQRRLTEATIQNFGLGYAPGGWDTLYHY 175

Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
            + QK +  + + +AGL+    +    YD+FR+RL+ PI   +G+ IAFG RTL   E  
Sbjct: 176 LVEQKRYPIDLVEKAGLIKPRQSGNGHYDQFRDRLMIPIYDVQGRAIAFGSRTL-TNEEP 234

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF K + L+    A   + K              ++VEGY D ++L  AG 
Sbjct: 235 KYLNSPETPLFDKSRTLFALDQAKGAIAKQ----------DAAVVVEGYFDAIALHAAGF 284

Query: 292 QNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-RV 348
           +N V+SLGTA T+ Q++ L + +   +I+  FD D  G++A  + +  +   +  G  +V
Sbjct: 285 ENAVASLGTAFTQGQIKQLLRYTDSKQIIFNFDADKAGIKATQRTLTEIGPLIYSGQAQV 344

Query: 349 NFVLLSRGEDPDSFIRCYG-KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
             + L  G+D D F++       ++  +  +   +D   ++    +     D+   +   
Sbjct: 345 RILNLPGGKDADEFLQTDQGPAQYQTALTTAPLWLDWQLEQILLGQDVTQADQFQGVIKQ 404

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP--SQR 465
           +   I  I     R +Y     + +      Y  +            R    + P  +  
Sbjct: 405 MIRLIAKIDHPSFRSHYIAKASELINHEDSHYKKQLEATLLTQVNRFRKAQARNPTATPE 464

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR--YDNNELQKLWSFLF 523
           +   ++     +   +  E  LL   ++ PA        LA+    +  +  + LW  + 
Sbjct: 465 VQPEAIAISSQTIALAQAEELLLRIYLHSPAQRHPIEARLAEKEVMFSLSHHRWLWQQIL 524

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
              +E K          +  +  G +L  L           +             +  L 
Sbjct: 525 ETPLEIK-------QNHVHNQLLGRMLDILTHHPERMHSLGSLLYLTETTEIDVRRATLN 577

Query: 584 LYKRFRLLS-----RQKEEIEKQIAQVTAKG-EAEKTAILI----SILHEVHIQIH 629
           ++     L      + +   +++   +  +  +              L  +  +  
Sbjct: 578 IHAAIATLEHVNWTQHRRYCQEKWQGLDPQHPDFAYYLREFEQADRKLKAIAQERQ 633


>gi|315613016|ref|ZP_07887927.1| DNA primase [Streptococcus sanguinis ATCC 49296]
 gi|315315126|gb|EFU63167.1| DNA primase [Streptococcus sanguinis ATCC 49296]
          Length = 591

 Score =  333 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 138/629 (21%), Positives = 257/629 (40%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 8   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G SF+E+VQ L    G+ L +      ++      L  + E 
Sbjct: 63  CFGCGRSGDVFKFIEEYQGVSFMEAVQLLGERVGIQLAMPIQSRPQQLSPHQALYDMHEE 122

Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F++G AP  R  L + L  K   +  
Sbjct: 123 AARFYHAILMTTKMGEEARAYLYKRGLTDDVLKHFQIGLAPAERNYLYQRLSGKFEEKNL 182

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL--SKGESVKYLNSPETI 240
           +          +    +D F  R++FP+ + +GQVIAF GR       ++ KY NS  T 
Sbjct: 183 LDSGLFY--LSDDNQFFDTFFGRIVFPLTNDKGQVIAFSGRIWQEMDSQTAKYKNSRSTA 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K           + + L+EG+MDV++  +AG++N V+S+GT
Sbjct: 241 IFNKSYELYHLDKAKKGTGKI----------TELYLMEGFMDVIAAYRAGIENAVASMGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL++  +  L + + +IVL +DGD  G  A  KA++ +         V  V +    DPD
Sbjct: 291 ALSKEHVDHLKRFTKKIVLSYDGDKAGQAATAKALEEL-----KDFSVEVVRVPDAMDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++         L+ ++       +  + +  + +    + E    +   I   K    
Sbjct: 346 EYLQKNSAEDLAYLLTKTRISPIEFYIHQLKPENSDNLQAQIEFIEKIAPLIAKEKSITA 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L     + + +     R  ++  R ++++ P+      S+   +     
Sbjct: 406 QNSYIHILADNLPSFDYQQVEQIVNESRIVQRQERVKEEQPPA----AISIPVTRQLTAV 461

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  +  +P +L +  +   D  +D  E Q L+  L                  
Sbjct: 462 MRAEAHLLYRMAENPVVLNDY-RLREDFFFDTPEFQILYELLSEQGE------------- 507

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +          +++             E +  ++ +     +   +   LLS+    I+K
Sbjct: 508 IGSEELSHQTPEVENAWYHVLSLDLPAEMSPQELME-----VEATRNRALLSKDNLRIKK 562

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 563 KVQEASHVGDTDTALEELQRLISQKRRME 591


>gi|300813855|ref|ZP_07094160.1| DNA primase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512042|gb|EFK39237.1| DNA primase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 600

 Score =  333 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 171/633 (27%), Positives = 283/633 (44%), Gaps = 48/633 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + ++++   + I  LI QYV+  R   N     Y   CPFH+EKTPSF  + SKG +
Sbjct: 5   IDDNLLEEIRDKVDIYELISQYVNLKRSGAN-----YIGLCPFHNEKTPSFSLSPSKGIF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRL 120
            CF C   GD +SF+    G  F E+++ LA    + L       K ++ +        +
Sbjct: 60  KCFGCGEGGDVISFVMKREGFGFREAIKFLADKYNIELRQAHYSKKDKELKDKAQRFYEI 119

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A  FF+++LK +  K    YL +R I    I  + LG+A DS  +L+ HL   G+ E
Sbjct: 120 NRQAALFFYNNLKKS--KLGMNYLRKREISPAVINKYGLGFANDSWDNLKNHLLSLGYKE 177

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+++E  LL        +YDRFRNR++FPI  ++G+VIAFGGR L   E  KYLNS E +
Sbjct: 178 EELVEINLLSSSKG--KTYDRFRNRIMFPIIDTKGRVIAFGGRVL-GDEKPKYLNSSENL 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG NL+N         +             IILVEGYMDV+SL  +G+   V+SLGT
Sbjct: 235 IFHKGSNLFNLNLISKEASR-----------DKIILVEGYMDVISLYNSGINYSVASLGT 283

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT+ Q  L+ + +  I +C+DGD  G+ A  +AID++L     G     + L+ G DPD
Sbjct: 284 SLTQAQAGLIKRYAKDIYICYDGDSAGINATVRAIDIMLSE---GISPKIISLAEGLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +I+ YGK +FE  +      +D          + ++ D  ++  +     ++ IK+   
Sbjct: 341 EYIKKYGKISFEGQVANGKSFLDFKIDNLKGKFNLSSSDGLSKFTMEAGKILSSIKNPIE 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y +              +  S   +   K    + +K            KGKL    
Sbjct: 401 RDVYMKNFCKTYGISTISLNSYISLINKNRPKKKFDKPKKI--------IKPKGKLQSGN 452

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              +  L+   +           ++    + + E++ ++  L + +   K    ++  + 
Sbjct: 453 IKAQKGLIAYCLAGHDFYDYIKSKVELTLFSSVEIRIIFEELENYY--DKKIEKDDFFKD 510

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L  +G    L   +       L     E N             L  +   L ++KE +  
Sbjct: 511 LINKG----LVSSETYKEIISLIVDEPEGNK------IISDYLLTLKRSWLLQEKENLLN 560

Query: 601 QIAQVTAKG--EAEKTAILISILHEVHIQIHQI 631
           Q+  +      + E    +I+ L  ++++++ I
Sbjct: 561 QLDSIAKSNSKDKEIFEKVINDLRTINLELNDI 593


>gi|28211634|ref|NP_782578.1| DNA primase [Clostridium tetani E88]
 gi|28204076|gb|AAO36515.1| DNA primase [Clostridium tetani E88]
          Length = 589

 Score =  333 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 166/631 (26%), Positives = 293/631 (46%), Gaps = 44/631 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I+ +     I ++I + V   R         Y   CPFH+EK+PSF    +K  Y
Sbjct: 2   ISKDVIQKVKESNDILDVISERVRLKRSGR-----YYMGLCPFHNEKSPSFTVTPNKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ ++F+       F+++V  LA  A + +   + +  KK+  + +L ++  
Sbjct: 57  KCFGCGEAGNVITFVMKTRNLPFVDAVHLLADRANIEVTYENGEAPKKDA-KEELYKINV 115

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F ++L+    K+   YL  RG+    I  F +GYA D    L  +L++KG++E  
Sbjct: 116 EAARYFFNNLRKN--KKALNYLQNRGLLQKTINNFGIGYAEDKWDGLLNYLKKKGYTELD 173

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++ AGL+I G+     YDRFRNR++FP+   RG+VI FGGR L   +  KYLNSPET +F
Sbjct: 174 MLAAGLIIKGNKRNI-YDRFRNRIMFPVFDYRGRVIGFGGRVLDNSKP-KYLNSPETHVF 231

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG NLY            I   +  N ++ +I+VEGYMD ++L Q G+++ V+SLGTAL
Sbjct: 232 KKGTNLYG-----------INFAINNNMNNMLIIVEGYMDCIALHQCGIRSAVASLGTAL 280

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q +LL + + ++++ +D D  G +A  + +D+       G  V  +++ +GEDPD F
Sbjct: 281 TPNQAKLLKRYANKVIISYDADLAGQKATQRGLDV---LKEQGLDVRVLMMPKGEDPDDF 337

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I+ +GK AF +LI  SL L+D   K+  E  +   P+   +      N +  ++    R 
Sbjct: 338 IKKHGKEAFLELIDRSLQLIDYKLKKALEGVNLKDPEGVIKYVNRAINILKDLQ-PIERE 396

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + + D  +   Q      +   +    N+        +  + +    K  L      
Sbjct: 397 IYIKRLSDETKLKSQVLYDLLNNKLQKDVNNS-------INVNIQEVLGNKLYLEPSYVR 449

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
               L+ ++I    I    +  ++   +     + + + +  ++        EEI   + 
Sbjct: 450 AGRVLIKSIIESEIIKDYVFHNISVDEFILKSHRDIINIILENY----DLGIEEIKSNIE 505

Query: 543 -ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                 E++K+             + + N  D  +   Q      +   L  + ++I+++
Sbjct: 506 MSYEDSEIIKEWIN-------IQDSKKINENDDYKVIVQDFIKEIKKYKLEEKIKKIKEE 558

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           I +  A+G  EK+  L   L  +  Q+   +
Sbjct: 559 IKKFEAEGNIEKSLSLAKELINIQRQLSDTQ 589


>gi|295700834|ref|YP_003608727.1| DNA primase [Burkholderia sp. CCGE1002]
 gi|295440047|gb|ADG19216.1| DNA primase [Burkholderia sp. CCGE1002]
          Length = 624

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 173/656 (26%), Positives = 277/656 (42%), Gaps = 65/656 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPPSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-------- 114
           +CF C   G  + FL   +G SF E+V  LA   G+ +P                     
Sbjct: 57  HCFGCGAHGTAIGFLMEHVGASFPEAVNELAQSVGLTVPNEPSPGYGGGGGTAGGYAPGA 116

Query: 115 -----TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167
                T L  L++ A D++   L+ A       YL +RG+       F LGYAP+     
Sbjct: 117 SKAVTTALSDLMQTACDYYRKQLRGAPGA--IQYLKKRGLTGEIAARFGLGYAPEGWQNL 174

Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
            +   + R     E  ++      D       YDRFR R++FPIR+ +GQVI FGGR L 
Sbjct: 175 EAAFPNYRDDALVEAGLVIVSEKSDAQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVLD 234

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
            GE  KYLNSPET LF+KG  LY  F A   ++             ++++VEGYMDV++L
Sbjct: 235 GGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQHYVLVVEGYMDVVAL 283

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
            Q G QN V++LGTA T   ++ L + +  ++  FDGD  G RAA +A+D  L H     
Sbjct: 284 AQLGFQNAVATLGTACTPIHVQKLMRQTDTVIFSFDGDAAGRRAARRALDACLPHAADNR 343

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
            + F+ L    DPDS++R +G  AF + +  ++PL   +       +  + P+ +A    
Sbjct: 344 TIRFLFLPSEHDPDSYVREFGTEAFAEQVERAMPLSQFMLNEVLTGKELDQPEGKARALF 403

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             K  +  +    LR        DRL   F +         R                  
Sbjct: 404 DAKPLLQALPANALRAQIMHMFADRLDVPFSEVAALCEVDARIA---------------A 448

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
                   K  +  +  E   L  L+ +P  +    +E  +         +L++ + +  
Sbjct: 449 AAREAPARKDRRSVTGIEEKTLRNLVMYPRTVAMLDEEAEEALLTVTRHGELFAEVTTHA 508

Query: 527 VEQKYFLPEEIHQRLCERG-----FGELLKQL---DRQVRDAGLWSATTEANIVDVRQGY 578
                    ++   L   G     F E+ +++   D  VRD  L      A I + R+  
Sbjct: 509 RALGDSAAFQLLSDLLRNGANAPTFEEIFRKILDYDENVRDLLLKDPQDAAVIEERREQE 568

Query: 579 Q------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +      +A  L  R+     + E++ +Q      +    + + L     ++  Q+
Sbjct: 569 RIVGEELKAAILKMRYDAYCDRLEQLSRQSRHTPEEF--AEFSELNRKRADMKRQL 622


>gi|77409565|ref|ZP_00786247.1| DNA primase [Streptococcus agalactiae COH1]
 gi|77171830|gb|EAO75017.1| DNA primase [Streptococcus agalactiae COH1]
          Length = 593

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 154/635 (24%), Positives = 274/635 (43%), Gaps = 48/635 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + + 
Sbjct: 1   MAIDKEKISEIKNSVNIVDVIGEVVGLTKTGRN-----HLGLCPFHKEKTPSFNVIEDRQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIR 119
           F++CF C   GD   F+      SF++SVQ LA  +G+PL      ++ KK K    L+ 
Sbjct: 56  FFHCFGCGRSGDVFKFVEDYQHISFLDSVQVLAERSGIPLDTNFKGQVPKKPKANQSLLD 115

Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           +  VA+ F+H  L      +R   YL ERG+    I+ F++G +P  +  L   L  K F
Sbjct: 116 IHRVASGFYHAYLMTTNDGERARQYLAERGVTEDLIKHFQIGLSPGGQDFLYRRLA-KEF 174

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234
            E+ ++ +GL    +NS   YD F NR++FP+ +  G+VIAF GR  ++ +      KY 
Sbjct: 175 DEKTLMSSGLFNYSENSNQFYDSFNNRIMFPLTNDIGEVIAFSGRVWTQEDIDRKQAKYK 234

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS  T +F+K   LY+   A   + K          +  + L+EG+MDV++  +AG++NV
Sbjct: 235 NSRATPIFNKSYELYHLDKARAVINK----------AHEVYLMEGFMDVIAAYRAGIENV 284

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +R L + + ++VL +DGD  G  A  K+++L+         V+ V + 
Sbjct: 285 VASMGTALTNEHVRHLKRFTKKVVLTYDGDRAGQNAIDKSLELL-----SDMTVDIVRIP 339

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD F++      F++L+          +    +  + +           +   I  
Sbjct: 340 NKMDPDEFLQANSAEDFKQLLENGRISNTEFYIHYLKPENTDNLQSEIAYVEKIAKLIAK 399

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                 +  Y   + + L       + +     R   ++ +       +   +Q  L + 
Sbjct: 400 SPSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHHRSQQQASSSVQTSATVQ--LPQT 457

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                 +  E  L   L+NHP +L E      +  +D  E+Q L+  L            
Sbjct: 458 GKLSAITKTEMQLFHRLLNHPYLLNEFRNR-DNFYFDTTEIQVLYELLKESGE------- 509

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                 +      +   +++R            E +I ++ +  ++A     + R L +Q
Sbjct: 510 ------ITSYDLSQESDKVNRTYYIILEEQLPVEVSIGEI-EAVEKARDRLLKERDLRKQ 562

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                + I Q + +G+ E     +  L      + 
Sbjct: 563 ----SQLIRQSSNQGDEEGALAALENLIAQKRNME 593


>gi|282859201|ref|ZP_06268323.1| DNA primase [Prevotella bivia JCVIHMP010]
 gi|282588020|gb|EFB93203.1| DNA primase [Prevotella bivia JCVIHMP010]
          Length = 669

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 156/693 (22%), Positives = 284/693 (40%), Gaps = 82/693 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  +  ++    I +++  ++   +  TN     Y   CPFHD+ TPSF  +  KG Y
Sbjct: 2   IDKQTVDKIIDATNIVDVVSDFISLRKAGTN-----YKGLCPFHDDSTPSFSVSPIKGVY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CFSC   G+ + F+      ++ E+++ L     + +   +   E+K     +  ++ +
Sbjct: 57  KCFSCGAAGNAVKFVMQYEQMTYWEALKWLGKKYNIEVKEREMTSEEKLQASERESMLIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A+++F + L    D R     Y   RG     I+ F+LG+    R S  +   + G+
Sbjct: 117 NEWASNYFQNILATNPDGRAIGLQYFRSRGFRDDIIKKFQLGFCLSPRDSFAKAALEAGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
            +E +++ GL      +    DRF  R++FP  S  G+V AFGGR L    KG   KY+N
Sbjct: 177 KKEFLLKTGLC-FERQTGELVDRFNGRVMFPWISVSGKVTAFGGRLLDSRTKGVMQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP++ ++HK + LY  F A   + K             + +VEGY DV+S+ Q G++NVV
Sbjct: 236 SPDSEIYHKERELYGIFQAKKAIAKY----------DLVYMVEGYTDVISMHQCGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ YQ+RLL + +  IVL +DGD  G  AA +  D++L     G  V  +LL  
Sbjct: 286 ANSGTALSVYQIRLLHRFTSNIVLLYDGDAAGQHAALRGTDMLLSE---GMNVKVLLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPD F + Y      K I ++     +           +   +R+E    +   I+ I
Sbjct: 343 GKDPDEFAKMYSAEDLVKYIEDNQTDFIVFKINLLLKGVTDPI-KRSEAINSIVESISVI 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK------------------------ 451
           KD  LR  Y      R     Q  I + + +    +                        
Sbjct: 402 KDPILRDTYLHECMARTGMAEQTLIAQMNRFIYNGREREKREAENQRTRENHLHNADTNL 461

Query: 452 ---KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQE-- 504
              +N  + ++       + S+     L+ + S  E  L+  +I +    IL+    E  
Sbjct: 462 ASVENPNNSNESATKNPTINSNSQFSILNSQFSNVETWLIQAIIRYGERVILKNVKDEVS 521

Query: 505 -----------------LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR--LCERG 545
                            L ++ + +    ++ S        + +           L    
Sbjct: 522 GKLLNLNVAQYIAYDLGLDNLSFTHPLYNQILSEAVEHSTNEDFVAENYFIHHRDLHISE 581

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
               L  +D+      L     EA    + +  +  +  ++R   + ++ +E+++QI Q 
Sbjct: 582 VATAL-SVDKFQLSESLQLRQDEAY---LFENVKHLILDFRRNY-VEKRLKELKEQIKQA 636

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            +     K  + +  + ++   + Q    + +I
Sbjct: 637 VSNEGKIKALVELQKMQQLRNILAQKLGNDIII 669


>gi|319944404|ref|ZP_08018678.1| DNA primase [Lautropia mirabilis ATCC 51599]
 gi|319742365|gb|EFV94778.1| DNA primase [Lautropia mirabilis ATCC 51599]
          Length = 687

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 166/495 (33%), Positives = 239/495 (48%), Gaps = 34/495 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI++LL  + + +++G+ V   +   N     Y   CPFH+EKTPSF  + +K FY
Sbjct: 2   IPQSFIQELLTRVDVVDVVGKAVKLRKAGAN-----YQGLCPFHNEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----KIEKKEKIQTDLI 118
           +CF C   G  +SFL    G  F+E+V  LA   G+ +P        +  +K   Q  L 
Sbjct: 57  HCFGCGAHGSAISFLMEHHGLGFVEAVHELARDVGLTVPEDHSREGAEAARKASQQLALS 116

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + ++ A  ++   LK         YL ERG+       F LGYAP    +L   L    +
Sbjct: 117 QWLDQAARYYRSRLKETPAA--ISYLKERGVTGEIARHFGLGYAPAGWRNLEGVL--PDY 172

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           + E  + AGL+I        YDRFR R++FPIR+ RGQVI FGGR L +GE  KYLNSPE
Sbjct: 173 AAEDAVRAGLVI-AGEDGKRYDRFRERIMFPIRNPRGQVIGFGGRVLGQGEP-KYLNSPE 230

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
             LF KG  LY  F A   ++ S R          +++VEGYMDV+ L Q G    V++L
Sbjct: 231 GPLFSKGHELYGLFEAREGIRTSGR----------VLVVEGYMDVVMLHQHGCHYAVATL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T   L  L +L+ R+V  FDGD  G RAA++A++  L  L    +++F+ L    D
Sbjct: 281 GTATTAMHLGKLLRLADRVVFSFDGDAAGRRAAWRALENALPLLSDTKQLDFLFLPPEHD 340

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDSF+R  G  AFE  + ++LPL   L K   +     TP+ RA ++  LK  +  + D 
Sbjct: 341 PDSFVRAEGLEAFEACVRDALPLSSFLLKELAQRADITTPEGRARMQAELKPLVQQMPDI 400

Query: 419 KLRYYYSQAIRDRLQQLFQKYIT---------EHSGYGRYWKKNARHRDQKGPSQRLMQS 469
            LR      +  RL    ++                     +   R    +  S R   S
Sbjct: 401 ALRTQILVDMAGRLGLPTEELAAYCGLQMAHPVAHVREGGVRHGGRAAGGEARSMRPGAS 460

Query: 470 SLVKGKLSKKPSLRE 484
            +    L  + +  E
Sbjct: 461 MMQGASLRDQAAPAE 475


>gi|288905581|ref|YP_003430803.1| DNA primase [Streptococcus gallolyticus UCN34]
 gi|288732307|emb|CBI13877.1| DNA primase [Streptococcus gallolyticus UCN34]
          Length = 602

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 150/634 (23%), Positives = 259/634 (40%), Gaps = 48/634 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I ++   + I ++IG+ V   R   N     Y   CPFH EKTPSF+  + K F
Sbjct: 11  AIDKELISEIKNSVNIVDVIGEVVSLTRAGRN-----YIGLCPFHKEKTPSFNVIEDKQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRL 120
           ++CF C   GD   FL      SF+ESV  +A  AG+PL V       K +     LI +
Sbjct: 66  FHCFGCGKSGDVYKFLEEYRQVSFLESVHLVAERAGIPLQVDVQQTQTKPQNPNQILIDI 125

Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            + A  F++  LK  +  +    YL +RG+    I+ F +G +P+    L + L ++ + 
Sbjct: 126 HKDAAKFYNAVLKTTKEGQEAKNYLAQRGLTDELIDYFNIGLSPNEPDFLYQSLAKR-YD 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
           E  ++ +GL    + +   YD F+NR++FP+    GQV+AF GR  +    + +  KY N
Sbjct: 185 ENALMASGLFNLSERTNRVYDAFQNRIMFPLTDDSGQVVAFSGRIWTKEDLENKQAKYKN 244

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +  T LF+K   LY+   A   + K             + L+EG+MDV++  +AG++N V
Sbjct: 245 TRSTALFNKSYELYHLDKARPVMSKK----------HEVYLMEGFMDVIAAYRAGIENAV 294

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   +R L + + +++L +DGD+ G  A  K+++L+    +       V +  
Sbjct: 295 ASMGTALTPDHVRHLKRYAKKVILTYDGDNAGQNAIAKSLELLKDFNVE-----IVRVPE 349

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD FI+     A   L+  +       +    +  + +           +   I   
Sbjct: 350 QMDPDEFIQKNSPQALANLLENNRISSTEFFIHYLKPENSDNLQAEIAYVEQISKIIAQS 409

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                +  Y   + D L       + +     R    N  +   +   QR+    L   K
Sbjct: 410 PSITAQNSYINMVADLLPDFDYYQVEQSVNSERLQ--NRSNLQSEAVKQRVTVVELPISK 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E+ L+  L+ H  +L E      +  +D  ELQ L+  L     E   +   
Sbjct: 468 NISAIIKAESQLMHRLLTHDYLLNEFRNR-GEFTFDTQELQALYDLLVQQ-GEVNSYDLA 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +                  RQ+    L     +    +  +          R R L +Q 
Sbjct: 526 QF-------------DDPTRQMYYRVLEENLPDEIANNEIEEIIDKRDRLLRERDLQKQS 572

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +     I + +  G+ +     +  L      + 
Sbjct: 573 K----LIRESSNLGDVDAALAALENLIAQKRNME 602


>gi|293365254|ref|ZP_06611971.1| DNA primase [Streptococcus oralis ATCC 35037]
 gi|291316704|gb|EFE57140.1| DNA primase [Streptococcus oralis ATCC 35037]
          Length = 591

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 145/629 (23%), Positives = 265/629 (42%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 8   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G SF+E+VQ L    G+ L +       +      L  + E 
Sbjct: 63  CFGCGRSGDVFKFIEEYQGVSFMEAVQLLGERVGIQLAMPVQSRPHQASPHQALYDMHEE 122

Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F++G AP  R  L + L  K F E+ 
Sbjct: 123 AARFYHAILMTTKMGEEARAYLYKRGLTDDVLKHFQIGLAPAERTYLYQRLADK-FEEKD 181

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     +    YD F  R+IFP+ + +GQVIAF GR   + ++   KY NS  T 
Sbjct: 182 LLDSGLFYLS-DGNQFYDTFFGRIIFPLTNDKGQVIAFSGRIWQETDNQTAKYKNSRSTA 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K           + + L+EG+MDV++  +AG++N V+S+GT
Sbjct: 241 IFNKSYELYHLDKAKKGTGKI----------TELYLMEGFMDVIAAYRAGIENAVASMGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL++  +  L + + +IVL +DGD  G  A  KA++ +         V  V +    DPD
Sbjct: 291 ALSKEHVDHLKRFTKKIVLSYDGDKAGQAATAKALEEL-----KDFSVEVVRVPDAMDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++         L+ ++       +  + +  + +    + E    +   I   K    
Sbjct: 346 EYLQKNSAEDLAYLLTKTRISPIEFYIHQLKPENSDNLQAQIEFIEKIAPLIAKEKSITA 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L     + + +     R  ++  R ++++ P+      SL   +     
Sbjct: 406 QNSYIHILADNLPSFDYQQVEQIVNESRIVQRQERVKEEQPPA----AISLPVTRQLTAV 461

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  +  +P +L +  +   D  +D  E Q L+  L ++               
Sbjct: 462 MRAEAHLLYRMAENPVVLNDY-RLREDFFFDTPEFQILYELLSAEGE------------- 507

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +          +++             E    ++ +     +   +   LLS+    I+K
Sbjct: 508 IGSEELSHQTPEVENAWYHVLSLDLPAEMLPQELVE-----VEATRNRALLSKDNLRIKK 562

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 563 KVQEASHVGDTDTALEELQRLISQKRRME 591


>gi|312278802|gb|ADQ63459.1| DNA primase [Streptococcus thermophilus ND03]
          Length = 603

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 155/644 (24%), Positives = 262/644 (40%), Gaps = 56/644 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I+D+     I ++IG+ V  +R   N     Y   CPFH EKTPSF+  + + 
Sbjct: 1   MVIDKTLIEDIKSSTNIVDVIGEVVSLNRAGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   GD   FL      SF ESV+ LA   G+ + +  P+  +++         
Sbjct: 56  FYHCFGCGKSGDVFKFLEEYRQISFQESVKVLADRLGIAVSIDVPRQVQRQNSPNQAFYD 115

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L E A  F+H  L      +    YL ERG+    ++ F++G +PD    L + + +K  
Sbjct: 116 LHEDALKFYHAVLMTTKIGEAARAYLYERGMTDELLKTFQIGLSPDEPDYLYQSVSKKYD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234
            E              +   +D F+NR++FP+++  G+ I F GR  +K +      KY 
Sbjct: 176 EEVLTESGLFN--LSGNNRIFDTFKNRIMFPLKNEFGKTIGFSGRVWTKEDIEKGQAKYK 233

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+  T +F+K   LY+   A   +QK          +  + L+EG+MDV++  +AG  N 
Sbjct: 234 NTRATRIFNKSYELYHLDQAKPVIQK----------THEVYLMEGFMDVIAAYRAGHVNA 283

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +  L KL+ +IVL +DGD PG  A  K+++L+    +       V + 
Sbjct: 284 VASMGTALTPEHVNRLRKLTKKIVLTYDGDKPGQNAIAKSLELLSDFQVD-----IVKIP 338

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD +++   + A  KL+VES       W  + +  + +           +   I  
Sbjct: 339 DSMDPDEYLQKTSEKALGKLLVESRISDVEFWIGQLKPANVDNLQAEIAYVEQIAKIIAK 398

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---- 470
                 +  Y   + D L       + +     R   +N +       S    +SS    
Sbjct: 399 SPSVTAQNSYISKVADLLPDFDFFQVEQAVNNARLTMRNQQMAQLSAASNSAYESSASGF 458

Query: 471 -----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                L            E  L   ++NHP IL +      D  +   EL++L+  L  D
Sbjct: 459 RGTVKLPSTPKITGLRRAENQLFHRMLNHPMILNDYRMR-DDFFFQTPELEELFQILKRD 517

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
                         ++       L +++              E N+ +V     QA+   
Sbjct: 518 G-------------QIDTVALSVLSQEVQTAYYQVLEEILPPETNLEEV-----QAIEER 559

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +   L  +   +  KQI + +  G+ +     + +L      + 
Sbjct: 560 RNHFLREQDFRKQSKQIRESSNHGDVDAAVEALQMLIAQKRDME 603


>gi|304382733|ref|ZP_07365224.1| DNA primase [Prevotella marshii DSM 16973]
 gi|304336128|gb|EFM02373.1| DNA primase [Prevotella marshii DSM 16973]
          Length = 643

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 151/657 (22%), Positives = 275/657 (41%), Gaps = 53/657 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  I  ++    I +++ ++V   +   N     Y   CPFH+EKTPSF+ + ++G  
Sbjct: 2   IDRATIDKIMDAANIVDVVSEFVSLRKSGAN-----YKGLCPFHNEKTPSFYVSPARGIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CFSC   G+ ++F+      ++ ES++ LA    + +         ++++  +  +  +
Sbjct: 57  KCFSCGKGGNAVNFIMEHEQMTYPESLRWLANKYHIEIHERELSDDEKREQNERESMFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +FH  L N  D R     Y   RG     I  F+LG+  + R ++ +    KG+
Sbjct: 117 NEWAASYFHDILLNNVDGRAIGMQYFRSRGFRDDIINRFQLGFCLNDRSAMAKTALSKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
            E+ +++ GL    D+     DRF  R IFP     G+++AFGGR L    KG + KY+N
Sbjct: 177 QEDFLLKTGLCYRRDDG-QLIDRFAGRAIFPWIGLSGKILAFGGRVLDARTKGVNQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP++ ++HK + LY  F A   + K  R          + +VEGY DV+S+ Q G+QNVV
Sbjct: 236 SPDSDIYHKERELYGIFQAKKAIAKEDR----------VYMVEGYTDVISMHQCGLQNVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ +Q+R+L + +  I L +DGD  G+ AA +  D+    L  G  V  +LL  
Sbjct: 286 ANSGTALSLHQIRMLHRFTSNITLLYDGDAAGIHAAMRGTDM---LLSEGMNVKILLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPDSF +     +F++ I +      + +K     +    P +R+E    +   +  I
Sbjct: 343 GEDPDSFAQRNTAQSFKQYIEDHQTDF-IEFKTHLLLQGVTDPVKRSEAISSIVKSVAVI 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG- 474
            D  +R  Y      R     +  I+  + Y     +       +          L++  
Sbjct: 402 HDHVVRATYIHDCAMRFNIKEETLISTMNRYIHSTIEEKEKTRNREQHANTTPQLLIEVD 461

Query: 475 KLSKKPSLREAALLLTLINHPA-ILQEQYQEL-------------------ADIRYDNNE 514
           K  ++    E  L+  +I H   I+    +                      ++ + N  
Sbjct: 462 KSQRQTREVEQMLIQMVIRHGEKIIFRNIETEDGGSIDLSVAQYIDYDLSSDNLAFQNPI 521

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++            +       +                  + +       +     +
Sbjct: 522 YNRILREAVEGCKHADFTALSYFTRHPDIEVNQTACNLGMEPFQLSESRQIQQDET--RL 579

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           R+  Q  +  Y+R   + +Q   +++QI       ++EK A L+    ++    + +
Sbjct: 580 REQVQHLILDYRRDY-IEKQLNALQQQI--TLHANDSEKMATLLPEYTQLQKMRNLL 633


>gi|307703794|ref|ZP_07640735.1| DNA primase [Streptococcus oralis ATCC 35037]
 gi|307622629|gb|EFO01625.1| DNA primase [Streptococcus oralis ATCC 35037]
          Length = 586

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 145/629 (23%), Positives = 265/629 (42%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G SF+E+VQ L    G+ L +       +      L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVSFMEAVQLLGERVGIQLAMPVQSRPHQASPHQALYDMHEE 117

Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F++G AP  R  L + L  K F E+ 
Sbjct: 118 AARFYHAILMTTKMGEEARAYLYKRGLTDDVLKHFQIGLAPAERTYLYQRLADK-FEEKD 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL     +    YD F  R+IFP+ + +GQVIAF GR   + ++   KY NS  T 
Sbjct: 177 LLDSGLFYLS-DGNQFYDTFFGRIIFPLTNDKGQVIAFSGRIWQETDNQTAKYKNSRSTA 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K           + + L+EG+MDV++  +AG++N V+S+GT
Sbjct: 236 IFNKSYELYHLDKAKKGTGKI----------TELYLMEGFMDVIAAYRAGIENAVASMGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL++  +  L + + +IVL +DGD  G  A  KA++ +         V  V +    DPD
Sbjct: 286 ALSKEHVDHLKRFTKKIVLSYDGDKAGQAATAKALEEL-----KDFSVEVVRVPDAMDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++         L+ ++       +  + +  + +    + E    +   I   K    
Sbjct: 341 EYLQKNSAEDLAYLLTKTRISPIEFYIHQLKPENSDNLQAQIEFIEKIAPLIAKEKSITA 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L     + + +     R  ++  R ++++ P+      SL   +     
Sbjct: 401 QNSYIHILADNLPSFDYQQVEQIVNESRIVQRQERVKEEQPPA----AISLPVTRQLTAV 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  +  +P +L +  +   D  +D  E Q L+  L ++               
Sbjct: 457 MRAEAHLLYRMAENPVVLNDY-RLREDFFFDTPEFQILYELLSAEGE------------- 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +          +++             E    ++ +     +   +   LLS+    I+K
Sbjct: 503 IGSEELSHQTPEVENAWYHVLSLDLPAEMLPQELVE-----VEATRNRALLSKDNLRIKK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 558 KVQEASHVGDTDTALEELQRLISQKRRME 586


>gi|218128549|ref|ZP_03457353.1| hypothetical protein BACEGG_00119 [Bacteroides eggerthii DSM 20697]
 gi|217989273|gb|EEC55587.1| hypothetical protein BACEGG_00119 [Bacteroides eggerthii DSM 20697]
          Length = 697

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 163/699 (23%), Positives = 299/699 (42%), Gaps = 96/699 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++  +V   +R  N     Y   CPFHD+KTPSF+ + +KG  
Sbjct: 2   IDQATIDRILDAAQIVDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPAKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+      S+ E+++ LA   G+ +   +   E+K  +  +  L  +
Sbjct: 57  KCFACGKGGNVVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSNEEKLVQGERESLFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A D+F   L+N  D R     Y   RG     IE F+LGY  +S  ++ +   +KG+
Sbjct: 117 NQFARDYFQDILRNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDAMAQEALKKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +I+ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 177 KKEFLIKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+RL+ + +  + + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 286 ASSGTALTPGQIRLIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F++ I E                +   P +RAEL  +L   I+ I
Sbjct: 343 GDDPDSFARKHNSTEFQQFIQEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG-----------RYWKKNARHRDQKGPSQ 464
            +  +R  Y +     L+   +  ++E +                 ++NA    +  P+ 
Sbjct: 403 PEAIVRDVYIKECAQLLRVEDKLLVSEVAKRREMQAEKRAEQTERERRNAVRSAEGAPNT 462

Query: 465 RLMQSSLV-------------------------------------KGKLSKKPSLREAAL 487
             ++ S                                       +GK  ++    E  +
Sbjct: 463 PKVEGSNPATPTTTNGTALPTGEAAGYDTNAPFPPEDNYISFIPQEGKEGQEFYKYERLI 522

Query: 488 LLTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVE 528
           L  ++ +                   +++    +L   ++ + N   +++ +       +
Sbjct: 523 LQMIVRYGEKIMCNATNDEGQEVPISVIEYVINDLKEDELSFHNPLHRQILTEAAVHIHD 582

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ--QALALYK 586
           + +           E    +L  +L         + + ++  + D  + Y+   AL +  
Sbjct: 583 EGFTAERYFLAH-PEAAISKLSVELISNRYQLSKYHSKSQKIVTDEERLYELVPALMINF 641

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           ++ ++S + + +   +         EK   ++    E+ 
Sbjct: 642 KYAIVSEELKHMMSALQDPAVANNEEKCNAIMKRYSEMR 680


>gi|327402254|ref|YP_004343092.1| DNA primase [Fluviicola taffensis DSM 16823]
 gi|327317762|gb|AEA42254.1| DNA primase [Fluviicola taffensis DSM 16823]
          Length = 660

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 151/665 (22%), Positives = 280/665 (42%), Gaps = 62/665 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I +++    I  +IG++V   +  +N          PF DEK+PSF  + +K  
Sbjct: 3   RIPPHIIDEIMQTSRIEEVIGEFVSLKKSGSNL-----KGLSPFVDEKSPSFMVSPAKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK---EKIQTDLI 118
           + CFS    G  +SFL      S+ E+++ LA   G+ +P   P+  ++      +  L 
Sbjct: 58  FKCFSSGKGGTVVSFLMEKEHFSYPEALKWLADKYGIQVPEDKPQTAEEMAAITERESLY 117

Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            + E A + F H++    + +     Y +ERG     I+ F+LGY  +S     +   +K
Sbjct: 118 IINEFAKEHFMHNMHETNEGQNIGLSYFEERGFRKDIIQKFQLGYCLNSGDDFTKAALKK 177

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLN 235
           G+ +E +   GL         S+D FR R++FPI S  G+V+ FGGRTL   + V KY N
Sbjct: 178 GYKKEYLESVGLTR--TKEERSFDFFRGRVMFPIHSISGRVLGFGGRTLITDKKVAKYFN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+I+++K + LY  + A   + K               L EGY DV+S+ QAGV N V
Sbjct: 236 SPESIIYNKSEILYGLYFAKGDIIKY----------DNCFLCEGYTDVISMHQAGVPNSV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GT+LT+ Q+RL+ + +  I + +DGD  G++A+++ IDL    L  G  V  VL   
Sbjct: 286 ASSGTSLTKEQIRLIKRYTQNITILYDGDAAGIKASFRGIDL---ILEEGMNVKVVLFPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDS+ +    T     I  +                 N P ++A++   + + I+ I
Sbjct: 343 GDDPDSYSKKVSTTELMDFIKANTQDFVSFKTSLLLAEGNNDPLQKAQIIRDVVHSISLI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW-------KKNARHRDQKGPSQRLMQ 468
            DQ  R  ++  I           I E +   +          + A++            
Sbjct: 403 PDQITRSVFTTEIARVFGFDESIVINELNKLRKNNIARDLEEPQIAQNPAFTDTFTTPTP 462

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHP--------------------AILQEQYQELADI 508
            S    ++    ++ E  L+  L+ +                     ++ +  + EL+  
Sbjct: 463 QSTTAQEVKNPYAIEEFELIRILVKYGIFAITTDHIDEHGVSHPVEVSVAELVHHELSKD 522

Query: 509 R--YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA- 565
              +     Q+++  +      +  +      +   +    +L+ +++    +       
Sbjct: 523 ELIFQYPIYQEIYQQIVEGLSSKTLYKISFWLRH-EKPEVVQLITEIETDQYELSPKWLS 581

Query: 566 ----TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                T   +  ++      +  +K+ R + ++ E+I+K + ++      E+   L+S  
Sbjct: 582 KYNVDTNREVDKLKATVMNGIYAFKKLR-IMQRIEQIQKDLNELAENITDEQLQDLLSEQ 640

Query: 622 HEVHI 626
             +  
Sbjct: 641 IVLER 645


>gi|18310990|ref|NP_562924.1| DNA primase [Clostridium perfringens str. 13]
 gi|18145672|dbj|BAB81714.1| DNA primase [Clostridium perfringens str. 13]
          Length = 595

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 171/642 (26%), Positives = 292/642 (45%), Gaps = 56/642 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + I+ +     I +++   V   R   N     +   CPFH+EK+PSF  +  K 
Sbjct: 1   MRISEEIIEKVKEQNDIVDVVSDVVRLKRAGRN-----FSGLCPFHNEKSPSFSVSPDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            + CF C   G+ +SF+      +F+++V+ LA  A + +P+ D K  + +K +  L  +
Sbjct: 56  IFKCFGCGEAGNVISFVMKTKNLNFVDAVKELADRANIIIPIEDGKQSESQKKKQVLYNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A  ++  +L+N   K    Y   RGI  + ++ F LGYA +   +   HLR++GFS 
Sbjct: 116 NKQAARYYFSNLQNN--KEAKEYFLRRGIKENILKSFGLGYAKEGWQNTINHLRKQGFSN 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E I  AGL I      T YDRFRNR+IFP+   +G VI FGGR L      KYLNSPET+
Sbjct: 174 EAIEAAGLGIKS-EKGTFYDRFRNRVIFPVFDYKGSVIGFGGRVL-DDSKPKYLNSPETL 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG NLY    A+ +                +I+VEGYMD +SL Q G+ NVV+SLGT
Sbjct: 232 VFHKGTNLYALNFAIKH----------GLQERTLIIVEGYMDCISLHQYGITNVVASLGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT+ Q RLL +   R+++ +D D  G  A  + +++       G  V  + + +G+DPD
Sbjct: 282 ALTDNQARLLKRYVDRVIISYDADIAGQMATIRGLEI---LQNAGLDVRVLTVPKGKDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FIR  GK AF KLI  +  L+D    R      F+  +   +    + N ++ + +   
Sbjct: 339 EFIRANGKEAFIKLIQSAKKLIDYKLHRARIGIDFSDNNGLIKYAERVVNILSDL-NPIE 397

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + I +      Q +    +       KN  + + K       +    K  +    
Sbjct: 398 KDVYIKRISEETSIKEQAFYDLLNKNLINSNKNHENVNNK-------EEYGTKLYVEPPY 450

Query: 481 SLREAALLLTLI--NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              E ++L  L    + +++++    L D    +  ++ L   +               +
Sbjct: 451 VKCERSVLKLLCMEENHSLVKKY---LEDDDLISPNIKSLEKII---------------N 492

Query: 539 QRLCERGFGELLKQLDRQVRDAGL---WSATTEANIVD---VRQGYQQALALYKRFRLLS 592
             + E GF  L K ++ +  D  +   W    +  I+D     +   +      R   L 
Sbjct: 493 DSIEEIGFNNLGKHVEAKCEDPKVLKEWLEVKDLLILDHSSNIEVLVRDYINLIRKYKLE 552

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +++  + K++ +       +++  L+    E+  ++ ++E  
Sbjct: 553 QEQTTVLKELKRCEQNNMFKESLDLVKRAKEISDKLKELERS 594


>gi|320530861|ref|ZP_08031898.1| DNA primase [Selenomonas artemidis F0399]
 gi|320136895|gb|EFW28840.1| DNA primase [Selenomonas artemidis F0399]
          Length = 594

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 155/636 (24%), Positives = 265/636 (41%), Gaps = 47/636 (7%)

Query: 1   MNYP--RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M  P    F++ +     I  ++  YV   R+      G YW CCPFH EKTPSF    +
Sbjct: 1   MKDPRMEAFVQQVRAATDILAVVQSYVPLRRKG-----GRYWGCCPFHSEKTPSFSVVPA 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--D 116
           +GF+YCF CH  GD   F+S +   +  E+++R A   G+P+P       ++ +++   D
Sbjct: 56  EGFFYCFGCHAGGDAFKFISLMEHITPFEAIKRQAEQLGIPVPERKRDAREEARLRALDD 115

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L R+  +A DFFH+ L      +    YL  RG+    I  + +G+AP +   L +  ++
Sbjct: 116 LRRVNALARDFFHNCLTMTRYGEPGKAYLAGRGMTEETIARWGIGFAPGAWSKLADAFQK 175

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G  E+ ++EAGL    + S   YDRFRNR++ PI   RG+++ FGGR L    + KYLN
Sbjct: 176 RGIPEKLLLEAGLCSARERSGGIYDRFRNRVMIPIADERGRIVGFGGRVL-GDGTPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           + ET +F+K K L+    A   +              + ++VEGYMD +++ +AGV NVV
Sbjct: 235 TAETPVFNKRKLLFGLDRAHRAIA----------HEGYAVVVEGYMDAIAVAEAGVANVV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA TE    LL + +PRIV C+D D  G  A  +A+  V         +  +LL  
Sbjct: 285 ATLGTAFTEDHAALLLRRAPRIVFCYDSDAAGQEATLRALAAVRGRAA---ELRVLLLPD 341

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPD +IR +G  AF  LI  +LP+ +    R    R     + +      +   +  +
Sbjct: 342 GKDPDEYIRTHGADAFRALIDAALPVPEYRL-RHIAARMAPGAEGQRAALREMLPVLAEL 400

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            D   R  Y +     L               R+                 +    V+ +
Sbjct: 401 -DDVTRSAYVRRTAAELFLDEGVIGDALR---RFRMHGGTEEPAPRAQSGAVPQRPVRRE 456

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                      LL  +      L E    +    + +     +                +
Sbjct: 457 RGTAAERAGRELLAAVWRDVTTLAEIDAAVPLTEFPDAFFGDILRAAAEHTAAGGALDAD 516

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            I                   +  A +    +E +  D  + + +          L+ + 
Sbjct: 517 FIAGLPAAA---------GAAISRALVEEGRSEESFQDALRTFHRM--------HLTARL 559

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
               ++  ++  +G+      L + + ++  ++  +
Sbjct: 560 ALHTRRAEEMMQEGKQAYIDEL-NEVKKIQDELSAL 594


>gi|77406974|ref|ZP_00783991.1| DNA primase [Streptococcus agalactiae H36B]
 gi|77174415|gb|EAO77267.1| DNA primase [Streptococcus agalactiae H36B]
          Length = 624

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 153/634 (24%), Positives = 274/634 (43%), Gaps = 48/634 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + + F
Sbjct: 33  AIDKEKISEIKNSVNIVDVIGEVVGLTKTGRN-----HLGLCPFHKEKTPSFNVIEDRQF 87

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRL 120
           ++CF C   GD   F+      SF++SVQ LA  +G+PL      ++ KK K    L+ +
Sbjct: 88  FHCFGCGRSGDVFKFVEDYQHISFLDSVQVLAERSGIPLDTNFKGQVPKKPKANQSLLDI 147

Query: 121 IEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             VA+ F+H  L      +R   YL ERG+    I+ F++G +P  +  L   L  K F 
Sbjct: 148 HRVASGFYHAYLMTTNDGERARQYLAERGVTEDLIKHFQIGLSPGGQDFLYRRLA-KEFD 206

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYLN 235
           E+ ++ +GL    +NS   YD F NR++FP+ +  G+VIAF GR  ++ +      KY N
Sbjct: 207 EKTLMSSGLFNYSENSNQFYDSFNNRIMFPLTNDIGEVIAFSGRVWTQEDIDRKQAKYKN 266

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   + K          +  + L+EG+MDV++  +AG++NVV
Sbjct: 267 SRATPIFNKSYELYHLDKARAVINK----------AHEVYLMEGFMDVIAAYRAGIENVV 316

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   +R L + + ++VL +DGD  G  A  K+++L+         V+ V +  
Sbjct: 317 ASMGTALTNEHVRHLKRFTKKVVLTYDGDRAGQNAIDKSLELL-----SDMTVDIVRIPN 371

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F++      F++L+ +        +    +  + +           +   I   
Sbjct: 372 KMDPDEFLQANSAEDFKQLLEKGRISNTEFYIHYLKPENTDNLQSEIAYVEKIAKLIAKS 431

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                +  Y   + + L       + +     R   ++ +       +   +Q  L +  
Sbjct: 432 PSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHHRSQQQASPSVQTSATVQ--LPQTG 489

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                +  E  L   L+NHP +L E      +  +D  E+Q L+  L             
Sbjct: 490 KLSAITKTEMQLFHRLLNHPYLLNEFRNR-DNFYFDTTEIQVLYELLKESGE-------- 540

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                +      +   +++R            E +I ++ +  ++A     + R L +Q 
Sbjct: 541 -----ITSYDLSQESDKVNRTYYMILEEQLPVEVSIGEI-EAVEKARDRLLKERDLRKQ- 593

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
               + I Q + +G+ E     +  L      + 
Sbjct: 594 ---SQLIRQSSNQGDQEGALAALENLIAQKRNME 624


>gi|313891796|ref|ZP_07825401.1| DNA primase [Dialister microaerophilus UPII 345-E]
 gi|313119790|gb|EFR42977.1| DNA primase [Dialister microaerophilus UPII 345-E]
          Length = 596

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 161/635 (25%), Positives = 293/635 (46%), Gaps = 45/635 (7%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M  +  +FI+ +   +PI  +IG YV   ++        +WACCPFH EKTPSF  +  K
Sbjct: 1   MKNFDNNFIQRIKDSLPIEQVIGAYVPLKKKGR-----SFWACCPFHQEKTPSFSVSPDK 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDL 117
           GFY+CF C+  GD +SF+  +   +F E++++LA IA + +P   +  + +KK ++   +
Sbjct: 56  GFYHCFGCNESGDIVSFVEKMDNITFPEAIEKLAEIARIEIPQKEMTYEEKKKAELSKQI 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             + E+A+ +FH+ L K    K  + Y  +R +    I+ FKLG+AP   + L      K
Sbjct: 116 YDVTELASIYFHNCLTKTDIGKEGYEYFLKRHLSDEIIKKFKLGFAPPEWHRLYSDFTSK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
                +I++    + G  +   YD FRNR +FPI + +G+ +AFGGR +      KYLNS
Sbjct: 176 KKISPEILQIA-GLVGYKNGKHYDIFRNRCMFPILNLKGKTVAFGGRVM-DDSLPKYLNS 233

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+++F+K + L+  + AL  ++               I+VEGYMD +SL   G+ NVV+
Sbjct: 234 PESVIFNKRRLLFALYQALPEIR----------EKRQAIMVEGYMDAISLHAHGITNVVA 283

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           SLGTA T  Q RLL + +  ++  +D D  G  A  +A+++       G ++  V L  G
Sbjct: 284 SLGTAFTIEQARLLKRYADELIFNYDMDAAGQNATKRALEIAG---NVGLKLRVVRLGDG 340

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPD FI  +G+ A+ + + ++ P  D L+    +    NT + + ++   + + +    
Sbjct: 341 KDPDEFINAHGREAYLESVAQAQPATDYLFSAALKRYDSNTLEGQQKILADMFDVLLAKG 400

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +      +   +  R+Q       +E   Y R  KKN+     +  S+++          
Sbjct: 401 NSFYFNSFIVKMARRMQMDEGLIRSEALRYAR--KKNSNVFISQKQSEKIKSEDYETKYN 458

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            K+  L E       + +  +  E ++ L    + ++  ++L+  +     E      E 
Sbjct: 459 MKRQKLLEEGFFRYCLFNNKL-PEGWELLKKYEFADDFHKELFR-ILEKLSETNITEKET 516

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             ++L  R +   L +L       G                         +   L R+  
Sbjct: 517 --EKLLPREYVPRLAELLMNSNSVGNLPMEEYIRP--------------LKKVYLQREYR 560

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
              +++A++  + + +K      I  ++  +I  +
Sbjct: 561 VHTQRVAEL-LETDPQKAREEQLICIKLSEEIRNL 594


>gi|225011598|ref|ZP_03702036.1| DNA primase [Flavobacteria bacterium MS024-2A]
 gi|225004101|gb|EEG42073.1| DNA primase [Flavobacteria bacterium MS024-2A]
          Length = 654

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 161/667 (24%), Positives = 263/667 (39%), Gaps = 59/667 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ I  +     +  +IG +V   +  +N     +    PF  E+TPSF  +  K  +
Sbjct: 2   ITRNTIDQVYETARVEEVIGDFVVLKKSGSN-----FKGLSPFSQERTPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA    + +   +   E+KEK   +  L  +
Sbjct: 57  KDFSSGKGGNVVAFLMEHEHFTYPEAIRFLAKRYNIEIEETEQSDEEKEKANTRESLYLI 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A D F   L  + +       Y  ERG    +I  F LGYA + R    +   + G+
Sbjct: 117 NQFAQDSFAQDLWESSEGMAIGLSYFRERGFTDESIRFFSLGYAAEQRDHFYKKATKAGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSP 237
           +E  + E GL+I   N     DRFR R+IFPIRS  G+V  FGGR LS   ++ KYLNSP
Sbjct: 177 AENLLEETGLVIK--NERGFVDRFRGRVIFPIRSMAGRVQGFGGRILSATAKTAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK   LY  + A   + K               LVEGY DV+ + Q GV+NVVSS
Sbjct: 235 ESDVYHKSMVLYGMYEAKKAIAK----------EDVCYLVEGYTDVIQMYQQGVENVVSS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ +L+  IV+ FDGD  GLRAA + IDL    L  G  V       GE
Sbjct: 285 SGTALTSEQIRLIRRLTSNIVVLFDGDAAGLRAAIRGIDL---ILEQGMNVKVCTFPVGE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R +     ++ +                  + N P +++     L   I+ I D
Sbjct: 342 DPDSFARSHTLEEIKEYLKNEAKDFIQFKTDLLLQEADNDPVKKSNTVRELVQSISKIPD 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-SQRLMQSSLVKGKL 476
              +  Y +     +           +      K   R  +     ++ ++Q +  K   
Sbjct: 402 PIKQEIYIKQCASTMDVSEAVLFNALAQEKSKKKVPVRSINTPTVGAETVIQKTPSKLGH 461

Query: 477 SKKPSLREAALLLTLINH-------PAIL-----------------QEQYQEL------A 506
                  E  ++  L+ +         +                   + ++++       
Sbjct: 462 VNPILSLERQIISILLQYGSQEAAFDELFISADEEGNLKEESKTVESKVHEKIFLDLQQD 521

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           ++     E Q L+  L   F  +    PE+I Q+        L   L             
Sbjct: 522 EVELIQPEFQILYKQLIEHFQMEGDVKPEKIIQQEDPHLGQILTDILFADEAYQLHDWEK 581

Query: 567 TEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
               + D +    Q +    L  R  L+ ++ + +        A  E +     +     
Sbjct: 582 KNIFVKDRKSAVGQLVSETILTFRRYLIDQKIQSLMDAAKDPDATEEDKLFLEDVIQYQN 641

Query: 624 VHIQIHQ 630
           +   + +
Sbjct: 642 LKKLLSR 648


>gi|54295202|ref|YP_127617.1| DNA primase [Legionella pneumophila str. Lens]
 gi|53755034|emb|CAH16522.1| DNA primase [Legionella pneumophila str. Lens]
          Length = 578

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 160/628 (25%), Positives = 270/628 (42%), Gaps = 54/628 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    +  LI  YV   +R        + ACCPFH+EKTPSF+    K FY
Sbjct: 5   IPQPFIDDLLNRTDLVELIDGYVPLKKRGN-----SHIACCPFHNEKTPSFNVVAKKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G+ +SF+   L   F ++V+ LA   G+ +P      + K  +   L  L+ 
Sbjct: 60  HCFGCGASGNAISFVMNYLNQGFTDAVETLATRLGLSVPRDGTGEKHKSSLN--LYNLMS 117

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
             + ++   LK    +    YL  RG+     + + LGYAP+  ++L    +    ++ +
Sbjct: 118 EVSQYYQKKLKYN-GQVAIDYLRNRGLSGEIAKRYHLGYAPEGWHNL---EKTFPNNQRE 173

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++  G+LI  D     YDR+RNR++FPI    G+VI FGGR L K +  KYLNSPET+LF
Sbjct: 174 LLSTGMLIKSDEG-KIYDRYRNRIMFPIHDRNGRVIGFGGRLLDKDQKPKYLNSPETVLF 232

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K + LY                 ++ +   II+VEGYMDV++L Q G+ NVV++LGTA 
Sbjct: 233 QKSRELYGLHQ----------VLSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 282

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           + + ++LL K +  ++ CFDGD  G +AA++A++  L HL  G    F+ L    DPDS 
Sbjct: 283 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 342

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +R  GK  F +L+ ++ PL    +   +++ + + P  + +L   +K  +  + +   + 
Sbjct: 343 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMVEGSYKQ 402

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                +  RL  +    +T         K   +    + P                    
Sbjct: 403 LLIDDLS-RLTHIESHRLTNLITDKSESKPEVQAAISRSPL------------------- 442

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
                +  L+  P I     Q++     +  E   L   L     +        + +   
Sbjct: 443 --RIAIALLLQKPEIYPAAIQQINPDLLNGQEHHILLK-LLQRLKDNPNANTATLIEYWR 499

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
              + E + +L                   ++   +   + L ++        E+  K+ 
Sbjct: 500 NTRYFESIIKLAAW---------DHNVPEPELINEFIDTVLLLQKQSNREALIEQYIKKS 550

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQ 630
            Q     E +     +        +I +
Sbjct: 551 QQKGLTKEEQIILQNLIKERHAQAEIEK 578


>gi|323340799|ref|ZP_08081051.1| DNA primase [Lactobacillus ruminis ATCC 25644]
 gi|323091922|gb|EFZ34542.1| DNA primase [Lactobacillus ruminis ATCC 25644]
          Length = 618

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 156/638 (24%), Positives = 277/638 (43%), Gaps = 42/638 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   I  +  +  I +++G +V       N     +   CPFH EKTPSF  N+ K F+
Sbjct: 11  IPEKTIDMVRSNADILDVVGNFVQMRHAGKN-----WVGLCPFHAEKTPSFSINEQKQFF 65

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKI------QT 115
           YCFSC   G+   F+  L   SFIE+V R+A +  + + P   P+ + + +         
Sbjct: 66  YCFSCGRGGNVFKFIMELEDLSFIEAVYRVAELENIEIDPRYSPENQARFQKGFESSEIG 125

Query: 116 DLIRLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            L  L + A D +H+ L      ++   YL +RG+    IE F LG+AP S+  L+ +  
Sbjct: 126 QLKNLYKTAADVYHYMLTTAEIGEQALDYLHQRGLTDDLIEEFGLGFAP-SQDFLKTYFE 184

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKY 233
             G  + ++     L       +  DRF +R++FPIR++ GQ IAF GR L K +   KY
Sbjct: 185 THGIGDYQLFRKSGLFTEHGDGSLVDRFHSRVMFPIRNASGQTIAFSGRLLIKDDKSPKY 244

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET+LF K K L+NF  A + +++             + L EG+MDVL+  ++GV+N
Sbjct: 245 LNSPETLLFEKSKVLFNFDKAKSVIRRD----------GEVYLFEGFMDVLAAYRSGVKN 294

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            ++S+GT+LT+ Q+  + +++ ++++C+DGD PG  A  +A+DL          V  V L
Sbjct: 295 GIASMGTSLTDDQIYQIEQITKKVLVCYDGDQPGQAATKRALDLFEDSSKIECEV--VNL 352

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLV-DMLWKRETENRSFNTPDERAELEIHLKNCI 412
               DPD ++R +G  +F+K++ ++   V +   +   E ++  T   +      +    
Sbjct: 353 PEKLDPDEYVRKHGTESFKKIVHDNRETVLEFYMRYFKEGKNLGTESGQLAYITDVLGET 412

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             + D          +            ++     +        R +    +  + S++V
Sbjct: 413 AKVSDSLQIQLTLGRLAKEFGIDKMSLESQLR-VLKQQLGTKNVRAESSLKKTGVDSNVV 471

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           K K   K    E  LL  ++N  ++  +    + D ++ + + Q L+  +   + E   +
Sbjct: 472 KEKEFSKIEKAERLLLHRILNDYSVYSKV-SSIEDFQFVHVDYQALYLLIEGYYSEHSEY 530

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +      +     +L  ++             E       Q     L + K    L 
Sbjct: 531 DDAKFLDYAEDSKLQNVLISIEM------------EDYGDYDEQEVDDCLKVLKHDAPLE 578

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            Q   I  Q+ Q   + +  K   L     ++  +   
Sbjct: 579 EQIARISTQLDQAKRQNDVNKITELTIKYIKMMQEKQA 616


>gi|307243247|ref|ZP_07525418.1| DNA primase [Peptostreptococcus stomatis DSM 17678]
 gi|306493375|gb|EFM65357.1| DNA primase [Peptostreptococcus stomatis DSM 17678]
          Length = 607

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 165/628 (26%), Positives = 284/628 (45%), Gaps = 28/628 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN  +D I+++     I+++I  YV      TN     Y   CPFH+EKTPSFH N +K 
Sbjct: 1   MNDMKDIIEEIKYRSDIADIISDYVKLKPAGTN-----YKGLCPFHNEKTPSFHVNTAKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIR 119
            Y CF C   GD +SF+  +    F+++V+ LA   G+ +   +D     + +       
Sbjct: 56  IYRCFGCGEGGDVISFVMKVENLDFMDAVRLLADRCGIEIKNKIDQNTRLRLEKINKFHT 115

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +   A  F++  L + +++    YL +RG+D   I+ F LGYAPDS  SL+ +L  KG++
Sbjct: 116 IHIEAARFYYSKLVDGQNQAF-NYLKKRGLDLKTIKNFGLGYAPDSWDSLKLYLTSKGYT 174

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           EE++ E+GLL     S   +D+FRNR++FPI   +G VI FGGR +  G+  KYLNSP++
Sbjct: 175 EEELFESGLLSKSSKSDRFFDKFRNRVMFPIFDYKGNVIGFGGRVMDNGQP-KYLNSPDS 233

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F+K  NLY    A  +L           +   +ILVEGYMD++SL Q G++N V++LG
Sbjct: 234 EIFNKRYNLYGLNFARKHL----------GNQKTLILVEGYMDLISLYQFGIKNTVATLG 283

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALT+ Q  L+ + +  +VL +D D  G+ A+ +AI++       G  V  + L   +DP
Sbjct: 284 TALTDEQAGLIKRYADILVLSYDSDQAGINASMRAIEI---LEKQGISVRILDLGDSKDP 340

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D FIR +G       I  ++          ++N   +   +           +  IK   
Sbjct: 341 DEFIREHGMAKMYDRIENAIEATRFRLNVLSKNYKLDDRKDSMVYLREAVKILKDIKSPI 400

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            + YY   +        +    E +G    W+K + +R     ++        + +    
Sbjct: 401 EQDYYINILSQMTATNAEIIRNEMNGKKVPWQKKSGNRSSNVDNRHFNFKKPKEVEEPS- 459

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            S  E  ++  ++      +    +L +  + +N  + ++S +     +      +    
Sbjct: 460 -SFVEMNIIAAIMLSSKAREIVRYKLDEDDFSDNNSKIIFSKVLKLDEKGIIKNEDIYDD 518

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           R+       L K     V    +         +  +    +   L KR + L  +++ I 
Sbjct: 519 RISLDYLNRLSKLNLSGVDLNDVLEVDKLIFNLLEKNRQVKIDDLLKRQKKLENRRKTI- 577

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627
                  +K   E    ++ I  E+  +
Sbjct: 578 ----DDNSKEAEEVDLEIMKIALEIVAE 601


>gi|194335846|ref|YP_002017640.1| DNA primase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308323|gb|ACF43023.1| DNA primase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 631

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 162/642 (25%), Positives = 275/642 (42%), Gaps = 42/642 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   + ++     I  +I  Y+       N     Y A  PF  EKTPSF  +  K  +
Sbjct: 2   IPPAIVDEVRQAADIVEIISDYLTLQPAGHN-----YKALSPFTREKTPSFVVSPDKQLF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CFS    G+  +F+  +   SF E+V+ +A  +G+ +     K E+K   +  L   + 
Sbjct: 57  KCFSSGKGGNVFNFVMEVEKLSFPEAVELVARRSGMDISRFTEKKEQKSAHEESLTETLR 116

Query: 123 VATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A  FF  +L++   K    Y  ++RG+    I+ F LGYAPD+   L    ++ G  ++
Sbjct: 117 WAAKFFRGTLESDAGKLGSIYLAEKRGLSEKTIKTFGLGYAPDAWDHLFTAAKRAGIPQK 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETI 240
            +++ GL+       + +D FR+R+IFPI S  GQV+ FGGRTL    ++ KYLNS E+ 
Sbjct: 177 HLLDLGLISANKQGNSWFDTFRHRVIFPIFSVGGQVVGFGGRTLESDPKAPKYLNSQESK 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K K LY    A N +++              +LVEGYMDVL+L QAG+ N V+S GT
Sbjct: 237 LFEKSKLLYGLHAAKNEIRRM----------ENALLVEGYMDVLALHQAGMTNAVASCGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT YQ ++L + + R++  +D D  G ++    ID+    L        ++L  G+DPD
Sbjct: 287 SLTRYQAKILRRYTSRVLFMYDADRAGQKSMMSGIDI---LLAENLTPFVIILPEGDDPD 343

Query: 361 SFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           SF+   G+  F +   E +    D   +   E+  F  PD ++     + + I  I D+ 
Sbjct: 344 SFVSREGREKFLRFTEEKMLSFQDFQIRFFRESGDFAEPDLKSRAIKVMTHTIAQIPDRI 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y Q +  +L                   K     + K  S    Q     GK + K
Sbjct: 404 RRELYLQELSKKLGLTLSALQELLE-------KEEGATENKRLSSENRQELPPPGKPAPK 456

Query: 480 PSLREAALLLTLINH----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-----QK 530
            S+ E   L  L+       A+L+        +   ++E Q+++  L   + +      +
Sbjct: 457 ISVLEKTFLKALLESTGYGNAVLEFAASHEEMLELPHHEAQEIFIHLIRRYHDIADRPDE 516

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--F 588
                            +L  +L  +   +  W   +  +  + ++     L  +K    
Sbjct: 517 RINIASEISSFGTPESRDLASELLIEQPISKKWLEQSNVHADNAKRCLAMFLDAFKNLIL 576

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             L  QK  + + I     + + ++   L+     +  +I +
Sbjct: 577 EPLLCQKNRLTEDIR---LESDTDREIELLREKIILDKKIRK 615


>gi|116628188|ref|YP_820807.1| DNA primase [Streptococcus thermophilus LMD-9]
 gi|116101465|gb|ABJ66611.1| DNA primase [Streptococcus thermophilus LMD-9]
          Length = 603

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 155/644 (24%), Positives = 262/644 (40%), Gaps = 56/644 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I+D+     I ++IG+ V  +R   N     Y   CPFH EKTPSF+  + + 
Sbjct: 1   MVIDKTLIEDIKSSTNIVDVIGEVVSLNRAGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119
           FY+CF C   GD   FL      SF ESV+ LA   G+ + +  P+  +++         
Sbjct: 56  FYHCFGCGKSGDVFKFLEEYRQISFQESVKVLADRLGIAVSIDVPRQVQRQNSPNQAFYD 115

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L E A  F+H  L      +    YL ERG+    ++ F++G +PD    L + + +K  
Sbjct: 116 LHEDALKFYHAVLMTTKIGEAARAYLYERGMTDELLKTFQIGLSPDEPDYLYQSVSKKYD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234
            E              +   +D F+NR++FP+++  G+ I F GR  +K +      KY 
Sbjct: 176 EEVLTESGLFN--LSENNRIFDTFKNRIMFPLKNEFGKTIGFSGRVWTKEDIEKGQAKYK 233

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+  T +F+K   LY+   A   +QK          +  + L+EG+MDV++  +AG  N 
Sbjct: 234 NTRATRIFNKSYELYHLDQAKPVIQK----------THEVYLMEGFMDVIAAYRAGHVNA 283

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +  L KL+ +IVL +DGD PG  A  K+++L+    +       V + 
Sbjct: 284 VASMGTALTPEHVNRLRKLTKKIVLTYDGDKPGQNAIAKSLELLSDFQVD-----IVKIP 338

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD +++   + A  KL+VES       W  + +  + +           +   I  
Sbjct: 339 DSMDPDEYLQKTSEKALGKLLVESRISDVEFWIGQLKPANVDNLQAEIAYVEQIAKIIAK 398

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---- 470
                 +  Y   + D L       + +     R   +N +       S    +SS    
Sbjct: 399 SPSVTAQNSYISKVADLLPDFDFFQVEQAVNNARLTMRNQQMAQLSAASNSAYESSASGF 458

Query: 471 -----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                L            E  L   ++NHP IL +      D  +   EL++L+  L  D
Sbjct: 459 RGTVKLPSTPKITGLRRAENQLFHRMLNHPMILNDYRMR-DDFFFQTPELEELFQILKRD 517

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
                         ++       L +++              E N+ +V     QA+   
Sbjct: 518 G-------------QIDTVALSVLSQEVQTAYYQVLEEILPPETNLEEV-----QAIEER 559

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +   L  +   +  KQI + +  G+ +     + +L      + 
Sbjct: 560 RNHFLREQDFRKQSKQIRESSNHGDVDAAVEALQMLIAQKRDME 603


>gi|284990208|ref|YP_003408762.1| DNA primase [Geodermatophilus obscurus DSM 43160]
 gi|284063453|gb|ADB74391.1| DNA primase [Geodermatophilus obscurus DSM 43160]
          Length = 628

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 135/640 (21%), Positives = 229/640 (35%), Gaps = 45/640 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I  ++G+++   R       G     CPFHDEK+PSFH   S+  
Sbjct: 6   RIRAADIALVRERSKIDEIVGEHLQLKRAG----GGSLKGLCPFHDEKSPSFHVTPSRNL 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-------IEKKEKIQ 114
           ++CF C V GD +SF+  +   SF E+V+ LA  A + L   D            +   +
Sbjct: 62  FHCFGCGVGGDVISFIQQIDHLSFTEAVELLAGRANLELHYEDDGGRPTGAPDRSQAGQR 121

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L+     A  F+   L +        +L +RG D      F  G+AP     L  HLR
Sbjct: 122 ARLVAANTAAAAFYAEQLGSPEAAPARQFLADRGFDRQVALDFGCGFAPGGWDGLTRHLR 181

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKY 233
             GF++++++ AGL  +  +  T  DRF  RL++PIR   G VI FG R L   +   KY
Sbjct: 182 GSGFTQQELVTAGLAKES-SRGTLIDRFHRRLVWPIRDITGDVIGFGARKLMDDDPGPKY 240

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LN+PET L+ K   LY    A   + +           S  ++VEGY DV++   AGV  
Sbjct: 241 LNTPETPLYKKSSVLYGIDRAKRDIAR----------RSQAVVVEGYTDVMACHLAGVTT 290

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV----N 349
            V+S GTA     + +L +L                         +       R      
Sbjct: 291 AVASCGTAFGPEHIGVLRRLLMDQDEFRGEVIYTFDGDAAGQAAAMKTFAEDQRFVGQTF 350

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
             +   G DP    + +G  A   L+    PL+  + +    +   +T + R        
Sbjct: 351 VAVEPDGRDPCELRQAHGDAAVRDLVGRRTPLIAFVLRTTLASYDLDTVEGRVAALEKTA 410

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             +  IKD  LR  Y++ +   +    +  + E         +  R     G   +  + 
Sbjct: 411 PLVAQIKDHALRPAYARQLAGMIGNTDESEVLE---------RVRRTTGDTGGPPQRGRP 461

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              +    +     E   L   +  P +    +  +    Y + +               
Sbjct: 462 RTPQKSPDEVAVEVEREALKVALQSPELAGPSFDAIPVEAYTDPDYAA-------VAAAV 514

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALYKR 587
                    +        E+     R+   A L +   E   ++ +   GY  A+     
Sbjct: 515 AAAGGAAATRVTGPAWLDEVAAHCTRESATALLTALAVEPVRSVGEADAGYVNAVLARLE 574

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                R+   ++ ++ ++      ++       L  +  Q
Sbjct: 575 EMHTVRRVAALKGRLQRMNPVEAGDEYMKAFGQLMALEQQ 614


>gi|305664553|ref|YP_003860840.1| putative DNA primase [Maribacter sp. HTCC2170]
 gi|88708570|gb|EAR00806.1| putative DNA primase [Maribacter sp. HTCC2170]
          Length = 659

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 152/659 (23%), Positives = 259/659 (39%), Gaps = 62/659 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +     +  +IG +V   +  +N     +    PF DE+TPSF  +  K  +
Sbjct: 2   ISKSTIDQVYETARLEEVIGDFVQLKKSGSN-----FKGLSPFSDERTPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA    + +   +   E+K++   +  +  +
Sbjct: 57  KDFSSGKGGNVVAFLMEHEHFTYPEAIKYLAKKYNIEVEETERTDEQKQEANERESMYLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A   F   L  +   +     Y  ERG     I+ F LGY  D           KG+
Sbjct: 117 SEFAQSHFAQMLWESELGKAIGLTYFKERGYTDETIKKFGLGYCLDRWDGFTTAALDKGY 176

Query: 179 SEEKIIEAGLLI-----DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VK 232
               + + GL I        N +  +DRF+ R++FPI S  G+V+ FGGR L+  +   K
Sbjct: 177 KLNYLEKTGLTIVKEDPKNPNGSRKFDRFKGRVMFPIHSMSGRVLGFGGRILTNDKKAAK 236

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPE+ ++HK K LY  + A   + K               LVEGY DV+   Q G+ 
Sbjct: 237 YLNSPESEIYHKSKVLYGIYYAKQAIAK----------EDNCYLVEGYTDVIQFYQRGIH 286

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           NVVSS GTALT  Q+RL+ +L+  I + FDGD  GLRA+ + IDL    L  G  V    
Sbjct: 287 NVVSSSGTALTPEQIRLINRLTKNITVLFDGDAAGLRASLRGIDL---ILEQGMNVKVCT 343

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              GEDPDSF +          + ++               + N P +RA+    + N I
Sbjct: 344 FPEGEDPDSFAKNNELEDIINFLQQNSKDFIQFKASLLVEEASNDPIKRADTVRDIVNSI 403

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           + I D   +  Y Q     +           +  G+     A  + ++      +  +  
Sbjct: 404 SKIPDTIKKEIYIQECAQIMNVSEAVLFNTLAQIGKKDIAEASKKAKQEQKAFDVVKNEP 463

Query: 473 KGKLSKKPSLREAALLLTLINH-----------------------PAILQ-EQYQEL--- 505
             +        E  ++  L+ +                       P  L+ + Y+++   
Sbjct: 464 VPEKVDVQYELERKIIELLLLYGNKKEEFEDLVLKENEDGDLILEPESLEVKVYEKIYLD 523

Query: 506 ---ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
               +I   N   + ++  L     E++ F        L +    E+   L  + +    
Sbjct: 524 LQDDEIELANQHFKSIYYKLIEQLNEKEDFAINTFIADLDQEMVTEISSILMEEEKYVLH 583

Query: 563 WSATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
              + +    D   G  Q +    L  R  L+ R+ E ++    +   +  +E    ++
Sbjct: 584 NWESKDIYPKDKIIGVSQLVSETILTLRCFLIKRRMETLQNS-TEDNFEDNSETLEEIM 641


>gi|169343495|ref|ZP_02864494.1| DNA primase [Clostridium perfringens C str. JGS1495]
 gi|169298055|gb|EDS80145.1| DNA primase [Clostridium perfringens C str. JGS1495]
          Length = 595

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 167/636 (26%), Positives = 290/636 (45%), Gaps = 44/636 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + I+ +     I +++   V   R   N     +   CPFH+EK+PSF  +  K 
Sbjct: 1   MRISEEIIEKVKEQNDIVDVVSDVVRLKRAGRN-----FSGLCPFHNEKSPSFSVSPDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            + CF C   G+ +SF+      +F+++V+ LA  A + +P+ D K  + +K +  L  +
Sbjct: 56  IFKCFGCGEAGNVISFVMKTKNLNFVDAVKELADRANIIIPIEDGKQSESQKKKQVLYNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A  ++  +L+N   K    Y   RGI  + ++ F LGYA +   +   HLR++GFS 
Sbjct: 116 NKQAARYYFSNLQNN--KEAKEYFFRRGIKENILKSFGLGYAKEGWQNTINHLRKQGFSN 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E I  AGL I      T YDRFRNR+IFP+   +G VI FGGR L      KYLNSPET+
Sbjct: 174 EAIEAAGLGIKS-EKGTFYDRFRNRVIFPVFDYKGSVIGFGGRVL-DDSKPKYLNSPETL 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG NLY    A+ +                +I+VEGYMD +SL Q G+ NVV+SLGT
Sbjct: 232 VFHKGTNLYALNFAIKH----------GLQERTLIIVEGYMDCISLHQYGITNVVASLGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT+ Q RLL +   R+++ +D D  G  A  + +++       G  V  + + +G+DPD
Sbjct: 282 ALTDNQARLLKRYVDRVIISYDADIAGQMATIRGLEI---LQNAGLDVRVLTVPKGKDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FIR  GK AF KLI  +  L+D    R      F+  +   +    + N ++ + +   
Sbjct: 339 EFIRANGKEAFIKLIQSAKKLIDYKLHRARIGIDFSDNNGLIKYAERVVNILSDL-NPIE 397

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + I +      Q +    +       KN  + + K       +    K  +    
Sbjct: 398 KDVYIKRISEETSIKEQAFYDLLNKNLINSNKNHENVNNK-------EEYGTKLYVEPPY 450

Query: 481 SLREAALLLTLI--NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              E ++L  L    + +++++    L +    +  ++ L   +     E  +     + 
Sbjct: 451 VKCERSVLKLLCMEENHSLVKKY---LEEDDLISPNIKSLEKIINDSIEEIGF---NNLG 504

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           + +  +     +  L   +    L      +NI  + + Y   +    R   L +++  +
Sbjct: 505 KHVEAKCEDPKV--LKEWLEVKDLLILDHSSNIEVLVKDYINLI----RKYKLEQEQTTV 558

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            K++ +       +++  L+    E+  ++ ++E  
Sbjct: 559 LKELKRCEQNNMFKESLDLVKRAKEISDKLKELERS 594


>gi|160945280|ref|ZP_02092506.1| hypothetical protein FAEPRAM212_02799 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443011|gb|EDP20016.1| hypothetical protein FAEPRAM212_02799 [Faecalibacterium prausnitzii
           M21/2]
          Length = 591

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 141/583 (24%), Positives = 258/583 (44%), Gaps = 33/583 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P ++I++L     I  L+G YV   R+        Y   CPFH EKTPSF+       +
Sbjct: 2   IPHEYIEELTRRTDIVELVGSYVQLKRKGR-----LYGGLCPFHSEKTPSFYVYPDTQSF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           YCF C   GD +SF+  +   S  E+++ LA+ AG+P P  D K  +   +++ ++ + +
Sbjct: 57  YCFGCQAAGDAISFVKKINNISSGEAIKMLASRAGMPEPQEDDKTGR---LRSRVLSMNK 113

Query: 123 VATDFFHHSLKNA--RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            A  FFH  L +     ++   Y   RG+D   I  F LGYAP+   +L ++LR KG+++
Sbjct: 114 EAARFFHACLNSTVEEARQARAYWRRRGLDDKTIVRFGLGYAPNDGQALYQYLRDKGYNQ 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++  +GL     +    Y  F  R++ PI   RG +IAFGGR +      KY+NSPET+
Sbjct: 174 QELDASGLFKRSQSG-RIYCLFWKRVMTPIFDLRGNIIAFGGRVM-DDSKPKYVNSPETL 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++HK + ++    A     +              +L EGYMDV+S+ QAG+   V + GT
Sbjct: 232 VYHKSETVFAMQIAKRSASR------------RFVLCEGYMDVISMQQAGIDTAVCACGT 279

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q+R++ + +  ++L +D D+ G +A  ++++L         +V  + +   +DPD
Sbjct: 280 ALTPGQVRIISEYADEVILSYDSDEAGQKATLRSLEL---FRNSPVKVGVLQIPGAKDPD 336

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +I+ YG   F+ L+      +D   KR  +    +   +R +        +    +   
Sbjct: 337 EYIKKYGPERFQALLDGVGNALDFRLKRLRDQYDLSQDAQRLQYVKEAVEMLAERSNPTE 396

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-----GPSQRLMQSSLVKGK 475
           +  Y+  + +         + +     +      R    +     G   ++       G 
Sbjct: 397 QEVYAGRLAEETNISKTAILAQLGTAVKRAGGKYRREKNRELLRSGEMNQIKVPYSAGGS 456

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            +   +  +  LL  ++  P  L+   Q+L   ++   + ++L+  + +   E       
Sbjct: 457 QALGIASAQQRLLAAILREPRYLELAKQQLTAEQFIQPQQKELYEAMLNCSREGVELSLT 516

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
            +   + E    E L +L  Q  D           +  + +G 
Sbjct: 517 ALRAFVSEEALNE-LSRLAAQYSDVNCTPDDIRLYLDRIARGM 558


>gi|152963815|gb|ABS50235.1| DNA primase [Erwinia amylovora]
          Length = 389

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 140/391 (35%), Positives = 210/391 (53%), Gaps = 19/391 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+ES++ LA + G+ +P        + +   +  L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATLYGLEVPYESGSGPSQLERHQRQSLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    DFF  SL          YL +RG+    ++ F +G+AP    +  +        
Sbjct: 119 LMTGLRDFFQQSLTQGPSAGARDYLAQRGLSDEVVKHFSIGFAPAGWDNALKRFGSNPDD 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + +I+AG+L+  ++   SYDRFR R++FPI   RG+VI FGGR L      KYLNSPET
Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIHDKRGRVIGFGGRVL-GDGMPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + AL                  +++VEGYMDV++L Q GV   V+SLG
Sbjct: 237 EIFHKGRQLYGLYEALK----------NYPEPGKLLVVEGYMDVVALAQFGVDYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ T   ++LL++ +  ++  +DGD  G  AA++A++  L ++  G ++ F+ L  GEDP
Sbjct: 287 TSTTAEHIQLLFRSTDTVICYYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390
           D+ +R  GK AFE  + +++PL   L+    
Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSTFLFDTLM 377


>gi|55821466|ref|YP_139908.1| DNA primase [Streptococcus thermophilus LMG 18311]
 gi|55737451|gb|AAV61093.1| DNA primase [Streptococcus thermophilus LMG 18311]
          Length = 603

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 155/644 (24%), Positives = 262/644 (40%), Gaps = 56/644 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I+D+     I ++IG+ V  +R   N     Y   CPFH EKTPSF+  + + 
Sbjct: 1   MVIDKTLIEDIKSSTNIVDVIGEVVSLNRAGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-EKKEKIQTDLIR 119
           FY+CF C   GD   FL      SF ESV+ LA   G+ + +  P+  +++         
Sbjct: 56  FYHCFGCGKSGDVFKFLEEYRQISFQESVKVLADRLGIAVSIDVPRQVQQQNSPNQAFYD 115

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L E A  F+H  L      +    YL ERG+    ++ F++G +PD    L + + +K  
Sbjct: 116 LHEDALKFYHAVLMTTKIGEAARAYLYERGMTDELLKTFQIGLSPDEPDYLYQSVSKKYD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234
            E              +   +D F+NR++FP+++  G+ I F GR  +K +      KY 
Sbjct: 176 EEVLTESGLFN--LSENNRIFDTFKNRIMFPLKNEFGKTIGFSGRVWTKEDIEKGQAKYK 233

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+  T +F+K   LY+   A   +QK          +  + L+EG+MDV++  +AG  N 
Sbjct: 234 NTRATRIFNKSYELYHLDQAKPVIQK----------THEVYLMEGFMDVIAAYRAGHVNA 283

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +  L KL+ +IVL +DGD PG  A  K+++L+    +       V + 
Sbjct: 284 VASMGTALTPEHVNRLRKLTKKIVLTYDGDKPGQNAIAKSLELLSDFQVD-----IVKIP 338

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD +++   + A  KL+VES       W  + +  + +           +   I  
Sbjct: 339 DSMDPDEYLQKTSEKALGKLLVESRISDVEFWIGQLKPANVDNLQAEIAYVEQIAKIIAK 398

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---- 470
                 +  Y   + D L       + +     R   +N +       S    +SS    
Sbjct: 399 SPSVTAQNSYISKVADLLPDFDFFQVEQAVNNARLTMRNQQMAQLSAASNSAYESSASGF 458

Query: 471 -----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                L            E  L   ++NHP IL +      D  +   EL++L+  L  D
Sbjct: 459 RGTVKLPSTPKITGLRRAENQLFHRMLNHPMILNDYRMR-DDFFFQTPELEELFQILKRD 517

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
                         ++       L +++              E N+ +V     QA+   
Sbjct: 518 G-------------QIDTVALSVLSQEVQTAYYQVLEEILPPETNLEEV-----QAIEER 559

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +   L  +   +  KQI + +  G+ +     + +L      + 
Sbjct: 560 RNHFLREQDFRKQSKQIRESSNHGDVDAAVEALQMLIAQKRDME 603


>gi|300727785|ref|ZP_07061167.1| putative DNA primase [Prevotella bryantii B14]
 gi|299774938|gb|EFI71548.1| putative DNA primase [Prevotella bryantii B14]
          Length = 658

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 157/664 (23%), Positives = 290/664 (43%), Gaps = 64/664 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  ++ ++    I  ++ ++V   +   N     Y   CPFHD+ TPSF+ + ++G  
Sbjct: 2   IDRSTVQKIMDATNIVEVVSEFVSLRKSGAN-----YKGLCPFHDDTTPSFYVSPARGIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF+C   G+ ++FL      ++ ES++ LA    + +       + +++E  +  +  +
Sbjct: 57  HCFTCGKGGNAVNFLMEHEQMTYPESLRWLARKYHIEIQERELSEEEKRQENERESMFIV 116

Query: 121 IEVATDFFHHSLKNARDK--RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +F + L +  D       Y   RG     I+ F+LG+    R  L E   Q+G+
Sbjct: 117 NEWAAKYFQNILHHDVDGLAVGMQYFRSRGFRDDIIQKFQLGFDLPERNKLPETAIQEGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
             E +I+ GL  + D+     DRF  R +FP     G+V+AFGGR L    KG + KY+N
Sbjct: 177 QREFLIKTGLCYERDHG-ELVDRFAGRAMFPWIGVSGKVVAFGGRVLDSRTKGVNQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP++ ++HK + LY  + A   + K  R          + +VEGY DV+S+ Q+G++NVV
Sbjct: 236 SPDSEIYHKERELYGIYQAKRAIAKEDR----------VYMVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL++YQ+ LL + +  IVL +DGD  G+ AA +  D+    L  G  V  +LL  
Sbjct: 286 ANSGTALSKYQIHLLHRFTSNIVLLYDGDAAGIHAALRGTDM---LLAEGMNVKVLLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G DPDSF R +    F + + E   +  + +K +   +    P +R+E    +   ++ I
Sbjct: 343 GNDPDSFARSHTAEEFRQYVEEHQ-MDFIEFKTDVLLKGVTDPIKRSEAINSIVFSVSVI 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            DQ +R  Y      RL       I+  + + R  +      +Q+  +Q+  ++  +   
Sbjct: 402 TDQIIRATYIHDCSVRLGIAEATLISTMNRFIREGQDEKIKEEQRQINQQSQETVELHSA 461

Query: 476 LSKKPSL----------------REAALLLTLINHPA----------------ILQEQYQ 503
            ++K ++                 E  L+  L+ +                  + Q    
Sbjct: 462 ETQKTAMDTVLGFNQSTSSQASHVETMLVQMLVRYGDRVITIIAPDRSEISLPLAQYVGL 521

Query: 504 EL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
           +L    +R+ ++   ++ +       E+ +       Q   +     L  +L        
Sbjct: 522 DLGSDQLRFHDDRYNQILNEALQHVGEENFKSESYFLQH-PDLKISGLAAKLCVDKVQIS 580

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
             S   E     +R    + + L  R   +  + + ++ QI Q++     +K   ++   
Sbjct: 581 -KSLKPEPTEEQIRNNVLRLV-LNFRCEFMENRLKNLKNQINQLSISDPDDKLLEVMKEY 638

Query: 622 HEVH 625
            EV 
Sbjct: 639 KEVQ 642


>gi|257867641|ref|ZP_05647294.1| DNA primase [Enterococcus casseliflavus EC30]
 gi|257873970|ref|ZP_05653623.1| DNA primase [Enterococcus casseliflavus EC10]
 gi|257801724|gb|EEV30627.1| DNA primase [Enterococcus casseliflavus EC30]
 gi|257808134|gb|EEV36956.1| DNA primase [Enterococcus casseliflavus EC10]
          Length = 611

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 148/641 (23%), Positives = 277/641 (43%), Gaps = 42/641 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+  I D+     I +++GQYV   +   N     Y+  CPFH+EK+PSF   + K  
Sbjct: 3   RIPQTVIDDIRERSNIVDIVGQYVQLKKSGKN-----YFGLCPFHNEKSPSFSVAEDKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   G+   FL  L G SF E+V ++A +  +PL         I +     + LI
Sbjct: 58  FHCFGCGRGGNVYGFLQELEGISFPEAVVKVAEMNDIPLDPQYQQSEGINEATSQTSQLI 117

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A + +HH L   A  +    YL +RG+    IE F +G+AP+ R  L +    + 
Sbjct: 118 ALHEKAAEVYHHMLVNTAAGQEALDYLLDRGLTMALIEEFNIGFAPNERSFLEKVFLNEK 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESVK 232
              E   + GL +  ++  +  DRF  R++FPIR+ +G+ I F GR L+       +  K
Sbjct: 178 AKAEFFPDTGLFVQRNDG-SLADRFYQRIMFPIRNPQGKTIGFSGRWLASEKVGDQDQPK 236

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPETILF+K + L+NF  A   ++K             + L EG+MDV++  QAG++
Sbjct: 237 YLNSPETILFNKREVLFNFDKARRAMRKD----------GQVYLFEGFMDVIAAWQAGIE 286

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           N ++S+GT+LT  Q+  + +++  ++LC+DGD  G+ A  + IDL+        +++ V 
Sbjct: 287 NGIASMGTSLTNQQIAHIERVAQEVILCYDGDSAGIEATNRGIDLL--QNNSRLKLSVVR 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +    DPD ++R YG  AF KL V     +          NR+     E+ +    +   
Sbjct: 345 VPERMDPDDYLRKYGTEAFYKLAVHGKETVFAFKMDYHRANRNLANEKEQLDYVQVVLKE 404

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  +     +  Y   +        +    +     +  +           +  ++ +  
Sbjct: 405 LQRVDSLLEQDRYLTQLSTEFNLSRETLQQQLKQNRQEQQPRQDAPPPAPTTNPMVFTPP 464

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            + +   +    +  LL  L +   +        + I + ++  Q+L+    +    +++
Sbjct: 465 TRQQPKTQVEKAQELLLYRLFHDSTLNHRFRA--SGISFIHDRYQQLYLLFDAYMETEEH 522

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
           F+  +    L E    +++  +                   +  +   Q +    +   +
Sbjct: 523 FVLAKFLDFLKEDSMKKMVIDIADL------------KASEEGTEQEFQDILQVFQKSGI 570

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           + +  +   Q  +   KG  +    L   + ++  ++ Q +
Sbjct: 571 AEEINQKRIQQQEARQKGNQQLELELAIEIIDLTKRLKQAK 611


>gi|168204753|ref|ZP_02630758.1| DNA primase [Clostridium perfringens E str. JGS1987]
 gi|170663597|gb|EDT16280.1| DNA primase [Clostridium perfringens E str. JGS1987]
          Length = 595

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 170/642 (26%), Positives = 292/642 (45%), Gaps = 56/642 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + I+ +     I +++   V   R   N     +   CPFH+EK+PSF  +  K 
Sbjct: 1   MRISEEIIEKVKEQNDIVDVVSDVVRLKRAGRN-----FSGLCPFHNEKSPSFSVSPDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            + CF C   G+ +SF+      +F+++V+ LA  A + +P+ D K  + +K +  L  +
Sbjct: 56  IFKCFGCGEAGNVISFVMKTKNLNFVDAVKELADRANIIIPIEDGKQSESQKKKQVLYNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A  ++  +L+N   K    Y   RGI  + ++ F LGYA +   +   HLR++GFS 
Sbjct: 116 NKQAARYYFSNLQNN--KEAKEYFLRRGIKENILKSFGLGYAKEGWQNTINHLRKQGFSN 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E I  AGL I      T YDRFRNR+IFP+   +G VI FGGR L      KYLNSPET+
Sbjct: 174 EAIEAAGLGIKS-EKGTFYDRFRNRVIFPVFDYKGSVIGFGGRVL-DDSKPKYLNSPETL 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG NLY    A+ +                +I+VEGYMD +SL Q G+ NVV+SLGT
Sbjct: 232 VFHKGTNLYALNFAIKH----------GLQERTLIIVEGYMDCISLHQYGITNVVASLGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT+ Q RLL +   R+++ +D D  G  A  + +++       G  V  + + +G+DPD
Sbjct: 282 ALTDNQARLLKRYVDRVIISYDADIAGQMATIRGLEI---LQNAGLDVRVLTVPKGKDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FIR  GK AF KLI  +  L+D    R      F+  +   +    + N ++ + +   
Sbjct: 339 EFIRANGKEAFIKLIQSAKKLIDYKLHRARIGIDFSDNNGLIKYAERVVNILSDL-NPIE 397

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + I +      Q +    +       KN  + + K       +    K  +    
Sbjct: 398 KDVYIKRISEETSIKEQAFYDLLNKNLINSNKNHENVNNK-------EEYGTKLYVEPPY 450

Query: 481 SLREAALLLTLI--NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              E ++L  L    + +++++    L +    +  ++ L   +               +
Sbjct: 451 VKCERSVLKLLCMEENHSLVKKY---LEEDDLISPNIKSLEKII---------------N 492

Query: 539 QRLCERGFGELLKQLDRQVRDAGL---WSATTEANIVD---VRQGYQQALALYKRFRLLS 592
             + E GF  L K ++ +  D  +   W    +  I+D     +   +      R   L 
Sbjct: 493 DSIEEIGFNNLGKHVEAKCEDPKVLKEWLEVKDLLILDHSSNIEVLVKDYINLIRKYKLE 552

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +++  + K++ +       +++  L+    E+  ++ ++E  
Sbjct: 553 QEQTTVLKELKRCEQNNMFKESLDLVKRAKEISDKLKELERS 594


>gi|166367226|ref|YP_001659499.1| DNA primase [Microcystis aeruginosa NIES-843]
 gi|166089599|dbj|BAG04307.1| DNA primase [Microcystis aeruginosa NIES-843]
          Length = 626

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 154/639 (24%), Positives = 281/639 (43%), Gaps = 40/639 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I+++   I I +LI + V   +R       +Y   CPFH+EK+PSF  + +K  
Sbjct: 5   RLHPDTIEEVKQRIDIVDLISERVVLKKRGR-----EYVGLCPFHEEKSPSFTVSPAKQM 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           YYCF C   G+ + F   +   SF E V  LA    +P+         ++E++  ++  L
Sbjct: 60  YYCFGCGAGGNGIKFFMEVGKQSFSEVVFDLARRYQIPIKTLAVEQRQELEQQLSLKEQL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLD-ERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175
             ++ VA  F+ H+L   + ++   YL  +R +    I  F+LGY+P+   +L  + + Q
Sbjct: 120 YEIMAVAVSFYQHALSQPQGEKALDYLKVQRQLTPETIATFQLGYSPEGWETLYRYLVEQ 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K +    + +AGL+    N +  YD+FR+RL+ PI  S+G+ IAFG RTL   E  KYLN
Sbjct: 180 KRYPVALVEQAGLIKARQNGSGYYDQFRDRLMIPIFDSQGRAIAFGSRTL-GNEQPKYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP+T LF KGK L+    A   +                I+VEGY D ++L   G+ NVV
Sbjct: 239 SPDTPLFEKGKTLFALDRAKQAI----------IQQDLAIVVEGYFDAIALHATGISNVV 288

Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352
           + LGTAL++ Q++LL +   S +I+  FD D  G++A  +AI+ +   +  G      + 
Sbjct: 289 ACLGTALSQEQIKLLLRYSESKQIIFNFDADQAGIKATQRAIEEINSLVYSGQVNLKILN 348

Query: 353 LSRGEDPDSFI--RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           L  G+D D F+  R  G  ++ +LI +S   +D    +   N++        ++   + +
Sbjct: 349 LPDGKDADEFLKSRADGVNSYRELIEKSPFWIDWQISQMLVNKNLKQGLHFQQIANSMVS 408

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  + D   R +Y     + L Q     +              +     G S  + + +
Sbjct: 409 LLQKLIDGNQRTFYLDYCAEILAQKDATRLPYILKNLSK-----QVNKPLGKSPAIKRKN 463

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR--YDNNELQKLWSFLFSDFVE 528
           ++           E  LLL  ++     +   + L +    ++  + + LW  +     E
Sbjct: 464 ILDKSEKNGSETAEWLLLLIYLHRSEYREMILESLDEKDLIFNVPDYRWLWQVILEL--E 521

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            +   P ++   L          + +R        S  T   +    +  + A+   ++ 
Sbjct: 522 TQITNPRDLMSALQNHLLMITTDK-NRDFNSLFHLSEHTSQAVFQPEEQIKDAIIALEKI 580

Query: 589 RLLSRQK---EEIEKQIAQVTAKGEAEKTAILISILHEV 624
            L+  ++   E++   +     +   ++    ++ L E+
Sbjct: 581 SLMEYRRYCQEQLINALDSNQREFYQQEFYQTVNKLIEI 619


>gi|71906167|ref|YP_283754.1| DNA primase [Dechloromonas aromatica RCB]
 gi|71845788|gb|AAZ45284.1| DNA primase [Dechloromonas aromatica RCB]
          Length = 578

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 165/628 (26%), Positives = 283/628 (45%), Gaps = 54/628 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI+DLL  + I +L+  YV   +   N     Y ACCPFH+EK+PSF  + +K FY
Sbjct: 2   IPDSFIQDLLARVDIVDLVDGYVPLKKAGAN-----YAACCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
           +CF C   G  +SF+    G  F+++V+ LA  AG+ +P  + +  K EK      LI +
Sbjct: 57  HCFGCGAHGTAISFVMEYQGLGFVDAVKDLATRAGMQVPESEGRSFKDEKPGQTRTLIEI 116

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A  ++   LK +       Y  +RG+       + +GYAPD   +L+E      ++ 
Sbjct: 117 MARAAAYYKDQLKKS--PHAIEYCKKRGLTGEIAARYGIGYAPDGWQNLQEVF--PDYNA 172

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++  AGL+I+ +     YDRFR+RL+ PI + +G++IAFGGR + +GE  KYLNSPET 
Sbjct: 173 DELKIAGLVIENEAGRR-YDRFRDRLMIPIINPKGEIIAFGGRIIDQGEP-KYLNSPETP 230

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+ L+    A   L+           +   I+ EGYMDV++L Q GV N V++LGT
Sbjct: 231 LFEKGRELFGLPQARQALR----------ETDTAIVTEGYMDVIALAQNGVGNAVATLGT 280

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T   +  L +   RIV CFDGD+ G +AA++A++  L  L    R+ F+ L +  DPD
Sbjct: 281 ATTATHVTKLLRQVDRIVFCFDGDNAGRKAAWRALENSLEALADNKRLGFIFLPQEHDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S+IR +GK  F++ + +++PL D L +   +     + + +A+L    K  +  +    L
Sbjct: 341 SYIREFGKEQFDRQVTQAMPLSDFLLRELAQRCDLTSSEGKAQLIYEAKPLLLKLPTPLL 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R    + + +     F +   E     + +   A  + ++                    
Sbjct: 401 RLQLVKRLAE--ASGFAQAEVERLCELKSYTPAAPPKAKRTAPSLT-------------- 444

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                 LL  +++ P +  +    L     +   L +L   +      ++      + ++
Sbjct: 445 ----RNLLRIVLHKPQLAAQLPIALLPDTPERAALTRLHQLV---TANRETSSYAGLREQ 497

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L       +   ++    +        E   ++ R   ++      +     R   E++ 
Sbjct: 498 LRGLPEESV---IENAASELLGLPFDEEGAEMEFRDTLEK-----LQEGGEKRAFAELQV 549

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQI 628
           +  Q    G +                 
Sbjct: 550 KAQQFGVAGLSAAEKQAYIQFLTTKANR 577


>gi|322391829|ref|ZP_08065294.1| DNA primase [Streptococcus peroris ATCC 700780]
 gi|321145309|gb|EFX40705.1| DNA primase [Streptococcus peroris ATCC 700780]
          Length = 591

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 135/629 (21%), Positives = 259/629 (41%), Gaps = 48/629 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG+ +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 8   DKRVIEEIKNNTNIVEIIGEVISLQKSGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+      +F ++V+ L    G+ L        +      +L  + + 
Sbjct: 63  CFGCGRSGDVFKFIEEYQQVTFADAVRILGERLGMHLETPVHNTAQHTSPHQNLYEMHDK 122

Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    I+ F +G AP  R S       + +SE+ 
Sbjct: 123 AARFYHAILMTTKMGEEARNYLYKRGLTDDVIKHFMIGLAPVER-SYLYQRLAEDYSEKD 181

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
           ++++GL      +   +D F NR++FP+ + +G+VIAF GR   + +S   KY NS  T 
Sbjct: 182 LLDSGLFYLS-ETNQFFDTFHNRIMFPLCNDQGKVIAFSGRIWQETDSQTAKYKNSRATA 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+         K          +  I L+EG+MDV++  +AGV+N V+S+GT
Sbjct: 241 IFNKSYELYHMERVKKGSGK----------APEIYLMEGFMDVIAAYRAGVENAVASMGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT   +  L + + ++++ +DGD  G  A  KA++ +         V  V +    DPD
Sbjct: 291 ALTAEHVEHLKRFTKKVIITYDGDKAGQAATVKALEEL-----TEVPVQIVQIPDAMDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++         L+  +       +    +  +      + E    +   I        
Sbjct: 346 EYLQKNSPEELAYLLSNTRISPIEFYIHHYKPSNSENLQAQIEFIEKIAPLIVREPSITA 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L     + +       R  ++  + +    P+   M  S    K     
Sbjct: 406 QNTYIHLLTDHLPSFDYQQVEHIINESRVRQRQEKVKQVANPTPITMSVS----KQLTAV 461

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA +L  +I +P ++   Y+   D  ++  E Q L+  L               +  
Sbjct: 462 MRAEAHILYRMIENP-LVLNDYRLRNDFVFETPEFQTLYGLLID-------------NGS 507

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +         ++++            +E +  ++++     +   +   LL++Q  +I+K
Sbjct: 508 ISSEDLANQTREVENAWYQVLALDLPSEMSPEELKE-----VEESRNRALLNQQNLQIKK 562

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ + +  G+ +     +  L     ++ 
Sbjct: 563 KVQEASHVGDTDTAIEELECLIAQKRRME 591


>gi|94272766|ref|ZP_01292180.1| DNA primase [delta proteobacterium MLMS-1]
 gi|93450021|gb|EAT01406.1| DNA primase [delta proteobacterium MLMS-1]
          Length = 599

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 163/628 (25%), Positives = 267/628 (42%), Gaps = 51/628 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           R+ ++ +     I+ +IG++V   R   N         CPFH EKTPSF  N  +G ++C
Sbjct: 18  RETVRLVKETADIAEVIGEHVTLQRAGANL-----KGLCPFHAEKTPSFMVNPGRGSFHC 72

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIE 122
           F C   GD  SFL       F E++++LAA   +PL      P+  ++ + +  L  +  
Sbjct: 73  FGCGEGGDVFSFLMLYHRVGFPEALKQLAARYHIPLAETSLSPQQREEARQREALYAINA 132

Query: 123 VATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFSE 180
            A   +H   L +    +   YL +RG+ +  IE F+LGYAP     LR+   R+K    
Sbjct: 133 RAAALYHRFLLHDPAADQARQYLAQRGMTAAIIERFQLGYAPPRWDFLRKTLEREKFTPA 192

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
                  L          YDRFR R+IFPI    G+V  FGGR L +GE  KYLN+ ET 
Sbjct: 193 TAAQAGLLASKESGGGHYYDRFRQRIIFPIIDQTGRVAGFGGRILGEGEP-KYLNTAETP 251

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY      + L+K          +   +LVEG  D+L+L   GV+ VV+ LGT
Sbjct: 252 IFDKSRILYGLHQHRDALRK----------ARSCLLVEGNFDLLALAAGGVEEVVAPLGT 301

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  QLR+L      +VL FDGD  GL+AA +A+ L L   + G      +L +G+DPD
Sbjct: 302 ALTAGQLRILRGYVEEVVLLFDGDSAGLKAAMRAVPLFLAEKLSG---RVAVLPQGQDPD 358

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ-K 419
           S+IR +G+   ++L+ E   L + ++ R          + +  +   L   ++ + DQ  
Sbjct: 359 SYIRAHGRQGLQELLAEGQSLAEFVFSRLAA-EHGLGVEGKNRIIAELAPMVHELNDQHL 417

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR  +     +RL    Q++                    +  ++R + +   +     +
Sbjct: 418 LRTRFIAHFSERLGISSQQFGQSIG---------------RPAARRPVATPPAEAGEEWQ 462

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +  E  +   L  H   L +               + L   + S   +     PE + +
Sbjct: 463 LTANERRIFAFLFLHGQYLPDFLAAGLQEYVSGRAARALLELMISQ-QQDFINAPEVLLE 521

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               R    L+  L              +    + ++   Q L  + +     R+ E + 
Sbjct: 522 HTEGR-LKSLVSSL---------LIDGADFYPEEQQEASAQELISWLQRHRRRREAEALV 571

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627
           ++I      G+ +K   L+     +  +
Sbjct: 572 QEINAAHLAGDQQKVMELMLKKQTLQKE 599


>gi|282880134|ref|ZP_06288854.1| DNA primase [Prevotella timonensis CRIS 5C-B1]
 gi|281306007|gb|EFA98047.1| DNA primase [Prevotella timonensis CRIS 5C-B1]
          Length = 658

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 143/670 (21%), Positives = 290/670 (43%), Gaps = 64/670 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  ++ +     I +++G++V   +   N     Y   CPFH+EKTPSF  + ++G  
Sbjct: 2   IDRVTVERIKDAANIVDVVGEFVTLRKSGAN-----YKGLCPFHNEKTPSFFVSPARGTC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   G+ +SF+      ++ E+++ LA    + +       +  +++  +  +  +
Sbjct: 57  HCFGCGKGGNSVSFIMEHEQMTYPEALRWLARKYHIEIQEREMSDEERREQSERESMFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A ++F   L +  D +     Y   RG     I+ F+LGY   +R++L +    KG+
Sbjct: 117 NEWAANYFSDLLHHHPDGQAIGMQYFRSRGFRDDIIQKFQLGYDLPNRFALAQAALGKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
            +E +I+ G+    D      DR+  R+IFP     G+V+ FGGR L    KG + KY+N
Sbjct: 177 QKEFLIKTGICYQNDRGD-LIDRYAGRVIFPWIGLNGKVVGFGGRVLDARTKGVNQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP + ++ K + LY  + A   + K            ++ +VEGY DV+S+ Q G++NVV
Sbjct: 236 SPASEIYQKDRELYGIYQAKKAIAK----------EDWVYMVEGYTDVISMHQCGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ +Q+ +L + +  I L +DGD  G+ AA++ +D+    L  G  +  +LL  
Sbjct: 286 ANSGTALSLHQIHILHRFTSNITLLYDGDAAGIHAAFRGMDM---LLSEGMNIKILLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPD F R +     +  I +      + +K +   ++   P +R+E    +   I  +
Sbjct: 343 GEDPDGFARKHTAEDLKTYIEQHQTDF-IQFKTDLLVKNETDPYKRSEGINSIIKSIAVV 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---QRLMQSSLV 472
            +Q LR  Y+Q    R+    +  I   + Y R +++     +++             L 
Sbjct: 402 PNQVLRDTYAQDCARRIGMKEETLINTMNRYIRNYREEMSKEERRQIEALNTSKPTPQLP 461

Query: 473 KGKLSKKPSLREAALLLTLINHPA--ILQEQYQE------------------LADIRYDN 512
             +  ++ S  E  L+  +I      +L++   E                    ++ +D+
Sbjct: 462 TAQPMEQASQVEKMLVQLIIRKGEQLVLEQVEDENHQLFDLTVAQFIDYSLREDNLHFDH 521

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ--------LDRQVRDAGLWS 564
               ++ +       E+ +           +    +L  +        +  +   + +  
Sbjct: 522 EISNRILTEAVEHSGEEGFVAESYFIHH-EDIEISKLATEMSTDRYQLIAEEKPTSDMKY 580

Query: 565 ATTEANIVDVRQGYQ-QALALYK--RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                   + ++  +   + L    R   + +  +++ +QI QV    + E+   L++  
Sbjct: 581 MDEAQLATEAQEALRNHTIHLLMDFRMDYVEQHLKDLMQQIGQV--SNDPERLQELVAEY 638

Query: 622 HEVHIQIHQI 631
            ++    + +
Sbjct: 639 KDMQQIRNAL 648


>gi|282882510|ref|ZP_06291131.1| DNA primase [Peptoniphilus lacrimalis 315-B]
 gi|281297652|gb|EFA90127.1| DNA primase [Peptoniphilus lacrimalis 315-B]
          Length = 600

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 172/633 (27%), Positives = 284/633 (44%), Gaps = 48/633 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + ++++   + I  LI QYV+  R   N     Y   CPFH+EKTPSF  + SKG +
Sbjct: 5   IDDNLLEEIRDKVDIYELISQYVNLKRSGAN-----YIGLCPFHNEKTPSFSLSPSKGIF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRL 120
            CF C   GD +SF+    G  F E+++ LA    + L       K ++ +        +
Sbjct: 60  KCFGCGEGGDVISFVMKREGLGFREAIKFLADKYNIELRQAHYSKKDKELKDKAQRFYEI 119

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A  FF+++LKN+  K    YL +R I    I  + LG+A DS  +L+ HL   G+ E
Sbjct: 120 NRQAALFFYNNLKNS--KLGMNYLRKREISPAVINKYGLGFANDSWDNLKNHLLSLGYKE 177

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+++E  LL        +YDRFRNR++FPI  ++G+VIAFGGR L   E  KYLNS E +
Sbjct: 178 EELVEINLLSSSKG--KTYDRFRNRIMFPIIDTKGRVIAFGGRVL-GDEKPKYLNSSENL 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG NL+N         +             IILVEGYMDV+SL  +G+   V+SLGT
Sbjct: 235 IFHKGSNLFNLNLISKEASR-----------DKIILVEGYMDVISLYNSGINYSVASLGT 283

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT+ Q  L+ + +  I +C+DGD  G+ A  +AID++L     G     + L+ G DPD
Sbjct: 284 SLTQAQAGLIKRYAKDIYICYDGDSAGINATVRAIDIMLSE---GISPKIISLAEGLDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +I+ YGK +FE  +      +D       E  + ++ D  ++  +     ++ IK+   
Sbjct: 341 EYIKKYGKISFEGQVANGKSFLDFKIDNLKEKFNLSSSDGLSKFTMEAGKILSSIKNPIE 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y +              +  S   +   K    + +K            KGKL    
Sbjct: 401 RDVYMRNFCKTYGISTISLNSYISLINKNRPKKKFDKPKKI--------IKPKGKLQSGN 452

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              +  L+   +           ++    + + E++ ++  L + + ++         + 
Sbjct: 453 IKAQKGLIAYCLAGHDFYDYIKSKVELTLFSSVEIRIIFEELENYYDKKIKKDDF--FKD 510

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L  +G    L   +       L     E N             L  +   L ++KE +  
Sbjct: 511 LINKG----LVSSETYKEIISLIVDEPEGNK------IISDYLLTLKRSWLLQEKENLLN 560

Query: 601 QIAQVTAKG--EAEKTAILISILHEVHIQIHQI 631
           Q+  +      + E    +I+ L  ++++++ I
Sbjct: 561 QLDSIAKSNSKDKEIFEKVINDLRTINLELNDI 593


>gi|260683070|ref|YP_003214355.1| DNA primase [Clostridium difficile CD196]
 gi|260686668|ref|YP_003217801.1| DNA primase [Clostridium difficile R20291]
 gi|260209233|emb|CBA62520.1| DNA primase [Clostridium difficile CD196]
 gi|260212684|emb|CBE03757.1| DNA primase [Clostridium difficile R20291]
          Length = 608

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 158/636 (24%), Positives = 296/636 (46%), Gaps = 45/636 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN  +D I+++     I+++I +Y++  +   N     Y   CPFH EKTPSF+ N SK 
Sbjct: 13  MNDIKDIIEEIKARCDIASIISEYMNIKQSGAN-----YKGLCPFHGEKTPSFYINTSKQ 67

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIR 119
            Y CF C   GD ++F+  +    F+++V+ LA   G+ +    + +   K +       
Sbjct: 68  IYKCFGCGEGGDVINFVMKMENLDFMDAVKILANKCGIEINTNMNEETRIKIEKSKKFQD 127

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +   A  F+  +L  +++   + YL  RG+D   I+ F LG++ DS  SL   L  KG+ 
Sbjct: 128 IHTEAARFYLSNLLGSKN-LGYEYLRIRGLDDKIIKKFGLGFSLDSWNSLMNTLISKGYK 186

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +++ GL+    +    YD+FRNR++FPI   RG +I FGGR L      KYLNSP+T
Sbjct: 187 KQDLLDCGLIAKNRDGTNCYDKFRNRVMFPIFDYRGNIIGFGGRVL-DDSLPKYLNSPDT 245

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           ++F+K +NLY    A   L            S  I+LVEGYMD++SL Q G++NVV++LG
Sbjct: 246 LIFNKKQNLYGLNFARKNL-----------ESKTIVLVEGYMDLISLYQYGIKNVVATLG 294

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q  L+ + +   ++ +D D+ G++A  +AID+       G  V  + L   +DP
Sbjct: 295 TALTEQQGILIKRYADTAIISYDSDEAGIKATLRAIDI---LTKLGINVKVLDLKDAKDP 351

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D F+R YG + ++K +  S   +        +  +    +ER +        I  +    
Sbjct: 352 DEFVRKYGLSDYKKAMDVSTHYIKYKIDHLKKEFNIQKDEERVKFAKEASKIIKQLTSPV 411

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
              +Y++ + +++    +    E   YG+ + K   +++QK   +++++   V+      
Sbjct: 412 EIDFYTKYLSNQIDINVESIKREV--YGKNYNKPYNNKNQKKIEEKVIEKVEVRQDGK-- 467

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             L E  L+  ++    I +    ++ +  +   E +++ +++       +      I +
Sbjct: 468 -QLVEETLIKIMLEDKKIREIALLKVEESDFLLKESKEILNYMIK----NQELDKITIDK 522

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                   E LK+L+    ++     T E           + +    R   L  Q   + 
Sbjct: 523 LKSLNISEEYLKELNSISLNSINLENTKEI----------EGIITNIRKNSLEEQINSLL 572

Query: 600 KQIAQVTAKGE----AEKTAILISILHEVHIQIHQI 631
           ++  ++    +      +   +   + E++  +  +
Sbjct: 573 REQQELENNNDMKEVDGRVMEIALKIVEINKILKSL 608


>gi|260903893|ref|ZP_05912215.1| DNA primase [Brevibacterium linens BL2]
          Length = 739

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 129/489 (26%), Positives = 214/489 (43%), Gaps = 27/489 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R+ I +L     I  ++G++V           G     CPFHDEKTPSF      G Y
Sbjct: 5   IKREDIDELRSRTRIDEVVGEFVTLKTAG----IGSLKGLCPFHDEKTPSFTVRPQVGMY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120
           +CF C   GD  SFL  +   SF+E+V+ LA   G+ L   D K    ++   +  L+ +
Sbjct: 61  HCFGCGESGDVFSFLQKVEQLSFVETVEALAGKIGMHLRYEDGKGPDREQASRRQRLLEM 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            EVA  FF   L++ + +    +L+ RG    + + F LG+AP S  SL   L++ GF+E
Sbjct: 121 HEVAQRFFTQCLESEQGQIGREFLEGRGFPLSSSKEFGLGFAPKSWDSLTSQLKRAGFTE 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
           E+I+  GL  +       YDRFR R+++PI+    + I FG R L   +   KYLN+PET
Sbjct: 181 EEILAGGLASE--GGRGIYDRFRGRVVWPIKDMTSRTIGFGARRLYDDDKGPKYLNTPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            L+HK + LY    A   + K+ R          +++VEGY DV++   AGV   V++ G
Sbjct: 239 ALYHKNQVLYGLDLAKKDIAKTKR----------VVIVEGYTDVMAAHLAGVTQAVATCG 288

Query: 300 TALTEYQLRLLWK-----LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           TA     ++++ +      + +++  FDGD  G +AA +A +          +    +  
Sbjct: 289 TAFGPEHVKIVRRLLGDDPTGQVIFTFDGDAAGQKAALRAFEFESEFTA---QTFVAVEP 345

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G DP       G  A  +LI    PL + +          ++ + R          +  
Sbjct: 346 DGLDPCDLRMQKGDGALRELIDGRKPLFEFVITTAISRYDLDSVEGRIAAVKASAEVLAD 405

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I+D+    +Y + +  R+     +  +      +   +   ++ ++              
Sbjct: 406 IRDRNSLSHYYRFVAGRIGVDIDEVESAVRDARKRPSRPQANQSRQPQPAPSQTPPGAPP 465

Query: 475 KLSKKPSLR 483
             S  P   
Sbjct: 466 VASGPPGQA 474



 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/173 (9%), Positives = 49/173 (28%), Gaps = 8/173 (4%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLF 523
                S +   +S      E   L+  + HP  +  + +  L+   +++   +++ + + 
Sbjct: 567 ERPDVSNLSAPISPARLKTEKGALMVALQHPEFVNAKLFDSLSARAFEHPGYRRIQAAVK 626

Query: 524 SDFV----EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
           +                   R  +       + L   V    +             +G+ 
Sbjct: 627 AAGGLKSAGGAQTAGTAAATRWADAVLSASAEDLKPYVTQLLVTPLP--VADGVSAEGFA 684

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           + +        L R   E+  ++ +            L+  L  +     +++
Sbjct: 685 RGIVARLFDYDLERIANELHSRLQRQDTTD-TAAQTTLLGQLQVLEQHRARLK 736


>gi|302874341|ref|YP_003842974.1| DNA primase [Clostridium cellulovorans 743B]
 gi|307689392|ref|ZP_07631838.1| DNA primase [Clostridium cellulovorans 743B]
 gi|302577198|gb|ADL51210.1| DNA primase [Clostridium cellulovorans 743B]
          Length = 591

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 163/629 (25%), Positives = 270/629 (42%), Gaps = 46/629 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              + I+ ++    I ++I +  V   R   N     Y+  CPFH E +PSF  +  K  
Sbjct: 2   ISEEIIQRIIDENDIVDVITESGVRLKRSGRN-----YFGLCPFHHENSPSFSVSPEKQI 56

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C   G+ + ++      S+ ++++ LA    + +     +IE K K       + 
Sbjct: 57  FKCFGCGEAGNVIGYVMKNKNMSYYDTLKYLAERVNIQVEENKAEIENK-KRIQRFYDIN 115

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             A  +F  +L     K    Y   RGI+   I+ F LGYA DS   L ++L+ K ++++
Sbjct: 116 VDAARYFFSNLMKN--KEALSYFTGRGIELGTIKSFGLGYALDSWGELLKYLKSKKYTDK 173

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           +I+  GL I+G  +   YDRFRNR+IFP+   +G VI FGGR L      KYLNSPE+ +
Sbjct: 174 EILSLGLAIEG-KNNRIYDRFRNRVIFPVFDYKGNVIGFGGRVL-DDSKPKYLNSPESRI 231

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K KNLY    A+            +    ++I+VEGYMD +SL Q GV NVV++LGTA
Sbjct: 232 FEKRKNLYGLNFAIK-----------KGLKDYVIIVEGYMDAISLHQFGVTNVVATLGTA 280

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT  Q +LL +   ++++ +D D  G  A  + + +       G  V  + +  G+DPD 
Sbjct: 281 LTTEQAKLLKRYVNKVIIAYDADFAGQSATMRGLKI---LKEAGFLVYVLRIPEGKDPDE 337

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           +IR  GK AF KL+  +  L +        N + +  +E+        N +    D   R
Sbjct: 338 YIRNNGKLAFVKLVEAAESLTEYRISSLEGNFNIDKQEEKIAFINEAANVLKE-SDPIER 396

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y + + ++     Q    + +  G       +  +     Q L         L K   
Sbjct: 397 DIYVKKLAEKTYISEQAIYDKIAEKGINANLEQQEYNFGDNGQNLY--------LEKGYI 448

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             E ALL  L+      +     ++      +  + L++ +              +    
Sbjct: 449 KAERALLKILLQKEEYTKFIVDNISVEEMILDSHKFLYNLILGC-----------MDVSF 497

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLSRQKEEIEK 600
            E+     LK  D             E N  +V  +   +   L  +   L  +K E+ K
Sbjct: 498 EEKVKSVQLKCTDNDSFKELTHILLEEINYEEVEVEKLIEDYILSIKKNNLEIKKRELVK 557

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +I Q  A G+ ++T + +  L E+   + 
Sbjct: 558 KIKQCEAAGDIQETIVYVKELEEIQRNLK 586


>gi|182624463|ref|ZP_02952247.1| DNA primase [Clostridium perfringens D str. JGS1721]
 gi|177910466|gb|EDT72843.1| DNA primase [Clostridium perfringens D str. JGS1721]
          Length = 595

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 170/642 (26%), Positives = 292/642 (45%), Gaps = 56/642 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + I+ +     I +++   V   R   N     +   CPFH+EK+PSF  +  K 
Sbjct: 1   MRISEEIIEKVKEQNDIVDVVSDVVRLKRAGRN-----FSGLCPFHNEKSPSFSVSPDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            + CF C   G+ +SF+      +F+++V+ LA  A + +P+ D K  + +K +  L  +
Sbjct: 56  IFKCFGCGEAGNVISFVMKTKNLNFVDAVKELADRANIIIPIEDGKQSESQKKKQVLYNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A  ++  +L+N   K    Y   RGI  + ++ F LGYA +   +   HLR++GFS 
Sbjct: 116 NKQAARYYFSNLQNN--KEAKEYFLRRGIKENILKSFGLGYAKEGWQNTINHLRKQGFSN 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E I  AGL I      T YDRFRNR+IFP+   +G VI FGGR L      KYLNSPET+
Sbjct: 174 EAIEAAGLGIKS-EKGTFYDRFRNRVIFPVFDYKGSVIGFGGRVL-DDSKPKYLNSPETL 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG NLY    A+ +                +I+VEGYMD +SL Q G+ NVV+SLGT
Sbjct: 232 VFHKGTNLYALNFAIKH----------GLQERTLIIVEGYMDCISLHQYGITNVVASLGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT+ Q RLL +   R+++ +D D  G  A  + +++       G  V  + + +G+DPD
Sbjct: 282 ALTDNQARLLKRYVDRVIISYDADIAGQMATIRGLEI---LQNAGLDVRVLTIPKGKDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FIR  GK AF KLI  +  L+D    R      F+  +   +    + N ++ + +   
Sbjct: 339 EFIRANGKEAFIKLIQSAKKLIDYKLHRARIGIDFSDNNGLIKYAERVVNILSDL-NPIE 397

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + I +      Q +    +       KN  + + K       +    K  +    
Sbjct: 398 KDVYIKRISEETSIKEQAFYDLLNKNLINSNKNHENVNNK-------EEYGTKLYVEPPY 450

Query: 481 SLREAALLLTLI--NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              E ++L  L    + +++++    L +    +  ++ L   +               +
Sbjct: 451 VKCERSVLKLLCMEENHSLVKKY---LEEDDLISPNIKSLEKII---------------N 492

Query: 539 QRLCERGFGELLKQLDRQVRDAGL---WSATTEANIVD---VRQGYQQALALYKRFRLLS 592
             + E GF  L K ++ +  D  +   W    +  I+D     +   +      R   L 
Sbjct: 493 DSIEEIGFNNLGKHVEAKCEDPKVLKEWLEVKDLLILDHSSNIEVLVKDYINLIRKYKLE 552

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +++  + K++ +       +++  L+    E+  ++ ++E  
Sbjct: 553 QEQTTVLKELKRCEQNNMFKESLDLVKRAKEISDKLKELERS 594


>gi|163786375|ref|ZP_02180823.1| putative DNA primase [Flavobacteriales bacterium ALC-1]
 gi|159878235|gb|EDP72291.1| putative DNA primase [Flavobacteriales bacterium ALC-1]
          Length = 655

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 145/669 (21%), Positives = 270/669 (40%), Gaps = 64/669 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I  +     +  +IG +V   +  +N     +    PF DE++PSF  +  K  +
Sbjct: 2   ISQNTIAQVFETARVEEVIGDFVQLKKSGSN-----FKGLSPFSDERSPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA    + +   +   E+K +   +  L  +
Sbjct: 57  KDFSSGKGGNAVTFLMEHEHFTYPEAIKYLAKKYNIEIEETERTDEEKAQQNARESLYLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A ++F   L      +     Y  ERG     I+ F+LGYA D   +  +    KG+
Sbjct: 117 SEYANEYFQKILHKTDQGKAIGLSYFKERGFTEETIKKFQLGYALDEWQAFTDDALGKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           + + + + GL I        +DRF+ R++FPI S  G+++ FGGR L   +   KYLNSP
Sbjct: 177 NIDFLEQTGLTIV--KEQKRFDRFKGRVMFPIHSMSGRILGFGGRILVNDKKAAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  + A   + K               LVEGY DV+   QAG++NVVSS
Sbjct: 235 ESEIYHKSKILYGLYFAKQSIAK----------EDNCYLVEGYTDVIQFHQAGIKNVVSS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTAL+  Q+RL+ +L+  I + FDGD  G+RA+ + IDL    L  G  V       GE
Sbjct: 285 SGTALSAEQIRLINRLTNNITVLFDGDAAGIRASIRGIDL---ILEQGVNVKVCTFPDGE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF +        + +  +               + N P ++AE    + N I+ I D
Sbjct: 342 DPDSFAKSNTLEELTEYLNNNAKDFIQFKASLLVKEANNDPIKKAETIREIVNSISKIPD 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGK 475
              R  Y Q     +        +  +   +    + N +++ ++   Q +      K K
Sbjct: 402 SIKREIYIQECARIMDISENVLFSTLAQISKKDFEETNKKYKQEQKAFQVVKNEPQPKQK 461

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQEL------------------------------ 505
           ++ +  L E  ++  L+ +    ++    +                              
Sbjct: 462 VNVQYEL-ERKIIEILMLYGDRTEQFEDLILKEDAVSGDLILEPTMQETRVFEKIYLDLQ 520

Query: 506 -ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
             ++ + N + ++L+  +     + + F  ++   +L +     +   L    +      
Sbjct: 521 EDEMMFSNEKFKELYYSIIDRLNQDENFSTKDFVNQLDQESASTVTSILMEDEKYNLHDW 580

Query: 565 ATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
              +    +      Q +    L  R  L+ ++ EE       +    ++      +   
Sbjct: 581 ERNQIIPKEKEHSVPQLVSQTILSLRCYLIDQKVEEYRND--TLREDSDSRTIMEDVKDY 638

Query: 622 HEVHIQIHQ 630
             + + + +
Sbjct: 639 VGLKMLLSR 647


>gi|306831671|ref|ZP_07464828.1| DNA primase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978610|ref|YP_004288326.1| DNA primase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|304426096|gb|EFM29211.1| DNA primase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178538|emb|CBZ48582.1| DNA primase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 608

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 149/634 (23%), Positives = 259/634 (40%), Gaps = 48/634 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I ++   + I ++IG+ V   R   N     Y   CPFH EKTPSF+  + K F
Sbjct: 17  AIDKELISEIKNSVNIVDVIGEVVSLTRAGRN-----YIGLCPFHKEKTPSFNVIEDKQF 71

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRL 120
           ++CF C   GD   FL      SF+ESV  +A  AG+PL V       K +     LI +
Sbjct: 72  FHCFGCGKSGDVYKFLEEYRQVSFLESVHLVAERAGIPLKVDVQQTQTKPQNPNQILIDI 131

Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            + A  F++  LK  +  +    YL +RG+    I+ F +G +P+    L + L ++ + 
Sbjct: 132 HKDAAKFYNAVLKTTKEGQEAKNYLAQRGLTDELIDYFNIGLSPNEPDFLYQSLAKR-YD 190

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
           E  ++ +GL    + +   YD F+NR++FP+    GQV+AF GR  +    + +  KY N
Sbjct: 191 ENALMASGLFNLSERTNRVYDAFQNRIMFPLTDDSGQVVAFSGRIWTKEDLENKQAKYKN 250

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +  T LF+K   LY+   A   + K             + L+EG+MDV++  +AG++N V
Sbjct: 251 TRSTALFNKSYELYHLDKARPVMSKK----------HEVYLMEGFMDVIAAYRAGIENAV 300

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   +R L + + +++L +DGD+ G  A  K+++L+    +       V +  
Sbjct: 301 ASMGTALTPDHVRHLKRYAKKVILTYDGDNAGQNAIAKSLELLKDFNVE-----IVRVPE 355

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD FI+     A   L+  +       +    +  + +           +   I   
Sbjct: 356 QMDPDEFIQKNSPQALANLLENNRLSSTEFFIHYLKPENSDNLQAEIAYVEQISKIIAQS 415

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                +  Y   + D L       + +     R   ++    +     QR+    L   K
Sbjct: 416 PSITAQNSYINMVADLLPDFDYYQVEQSVNSERLQNRSNLQSEVVK--QRVTVVELPISK 473

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E+ L+  L+ H  +L E      +  +D  ELQ L+  L     E   +   
Sbjct: 474 NISAIIKAESQLMHRLLTHDYLLNEFRNR-GEFTFDTQELQALYDLLVQQ-GEVNSYDLA 531

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +   R              RQ+    L     +    +  +          R R L +Q 
Sbjct: 532 QFDDR-------------TRQMYYRVLEENLPDEIANNEIEEIIDKRDRLLRERDLQKQS 578

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +     I + +  G+ +     +         + 
Sbjct: 579 K----LIRESSNLGDVDAALAALENFIAQKRNME 608


>gi|218248520|ref|YP_002373891.1| DNA primase [Cyanothece sp. PCC 8801]
 gi|257061587|ref|YP_003139475.1| DNA primase [Cyanothece sp. PCC 8802]
 gi|218168998|gb|ACK67735.1| DNA primase [Cyanothece sp. PCC 8801]
 gi|256591753|gb|ACV02640.1| DNA primase [Cyanothece sp. PCC 8802]
          Length = 646

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 161/613 (26%), Positives = 281/613 (45%), Gaps = 38/613 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I+++   + I ++I  YV   +R       DY   CPFHDEKTPSF  + +K  
Sbjct: 6   RLHPDTIEEVKQRVDIYDVISDYVVLKKRGK-----DYLGLCPFHDEKTPSFSVSPTKQL 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117
           YYCF C+  G+ + FL  +   SF E V  LA    VP+  ++P+  ++ +     +  L
Sbjct: 61  YYCFGCNQGGNAIKFLMEVGKQSFSEVVFDLARRYQVPIKTLEPEERQELQRQLSLREQL 120

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175
             ++ +   F+ H+L   + +    YL ++R +    I+ F+LGYAP    +L  + + Q
Sbjct: 121 YEILALTATFYQHALYQPQGENALNYLKEKRQLSEETIQQFQLGYAPAGWETLYRYLIEQ 180

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K +      EAGL+    N +  YDRFR+R+I PI   +G+VI FG R+L   E  KYLN
Sbjct: 181 KRYPIALAEEAGLISPRKNGSGYYDRFRDRVIIPILDIQGRVIGFGSRSL-GDELPKYLN 239

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP+T LF+KG+ L+    A N ++          S    I+VEGY D ++L   G+ N V
Sbjct: 240 SPDTPLFNKGQILFALDQAKNAIR----------SLDKAIVVEGYFDAIALHSVGINNTV 289

Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVL 352
           +SLGTAL++ QL+ L + +   +I+  FD D+ G++A  +AI+ +   +  G  ++  + 
Sbjct: 290 ASLGTALSQTQLKQLLRYTESKQIIFNFDADEAGIKATQRAINEIESLVYSGQVQLRILN 349

Query: 353 LSRGEDPDSFIRCYG--KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           +  G+D D F+R +      + +L+  S    D   ++   ++     D   ++   +  
Sbjct: 350 IPDGKDADEFLRSHPDAVENYHQLMENSPLWFDWQIQQLLIDKHLKKADHFEQIAQEMVK 409

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
            +N ++D   R YY +   + L Q   +             KK          +  ++++
Sbjct: 410 LLNRLEDSNKRTYYIRYCAEILSQGDTRSLSIYIKNLQNQLKKPKSLVSAIKNTTSIIKT 469

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR--YDNNELQKLWSFLFSDFV 527
           S        + + +        ++ P   QE + +L +    +  +  + LW  +     
Sbjct: 470 SSSTEDKLLEKAEKLLL--RIYLHCPDYRQEIFNQLEEKDLIFTLSHHRLLWQQILE-IE 526

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                 PE++   + ER     L QL  Q  D    S  +E +  D+       + L   
Sbjct: 527 SDINQTPEQLISLVQERSLQ--LSQLTNQFNDIFHLSENSEKDTQDIDS---NRIPLLIH 581

Query: 588 FRLLSRQKEEIEK 600
             L+  +  ++EK
Sbjct: 582 SALIRMEIVKLEK 594


>gi|94263093|ref|ZP_01286912.1| DNA primase [delta proteobacterium MLMS-1]
 gi|93456636|gb|EAT06744.1| DNA primase [delta proteobacterium MLMS-1]
          Length = 599

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 163/628 (25%), Positives = 267/628 (42%), Gaps = 51/628 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           R+ ++ +     I+ +IG++V   R   N         CPFH EKTPSF  N  +G ++C
Sbjct: 18  RETVRLVKETADIAEVIGEHVTLQRAGANL-----KGLCPFHAEKTPSFMVNPGRGSFHC 72

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIE 122
           F C   GD  SFL       F E++++LAA   +PL      P+  ++ + +  L  +  
Sbjct: 73  FGCGEGGDVFSFLMLYHRVGFPEALKQLAARYHIPLAETSLSPQQREEARQREALYAINA 132

Query: 123 VATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFSE 180
            A   +H   L +    +   YL +RG+ +  IE F+LGYAP     LR+   R+K    
Sbjct: 133 RAAALYHRFLLHDPAADQARQYLAQRGMTAAIIERFQLGYAPPRWDFLRKTLEREKFTPA 192

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
                  L          YDRFR R+IFPI    G+V  FGGR L +GE  KYLN+ ET 
Sbjct: 193 TAAQAGLLASKESGGGHYYDRFRQRIIFPIIDQTGRVAGFGGRILGEGEP-KYLNTAETP 251

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY      + L+K          +   +LVEG  D+L+L   GV+ VV+ LGT
Sbjct: 252 IFDKSRILYGLHQHRDALRK----------ARSCLLVEGNFDLLALAAGGVEEVVAPLGT 301

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  QLR+L      +VL FDGD  GL+AA +A+ L L   + G      +L +G+DPD
Sbjct: 302 ALTAGQLRILRGYVEEVVLLFDGDSAGLKAAMRAVPLFLAEKLSG---RVAVLPQGQDPD 358

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ-K 419
           S+IR +G+   ++L+ E   L + ++ R          + +  +   L   ++ + DQ  
Sbjct: 359 SYIRAHGRQGLQELLAEGQSLAEFVFSRLAA-EHGLGVEGKNRIIAELAPMVHELNDQHL 417

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR  +     +RL    Q++                    +  ++R + +   +     +
Sbjct: 418 LRTRFIAHFSERLGISSQQFGQSIG---------------RPAARRPVATPPAEAGEEWQ 462

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +  E  +   L  H   L +               + L   + S   +     PE + +
Sbjct: 463 LTANERRIFAFLFLHGQYLPDFLAAGLQEYVSGRAARALLELMISQ-QQDFINAPEVLLE 521

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               R    L+  L              +    + ++   Q L  + +     R+ E + 
Sbjct: 522 HTEGR-LKSLVSSL---------LIDGADFYPEEQQEASAQELLSWLQRHRRRREAEALV 571

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627
           ++I      G+ +K   L+     +  +
Sbjct: 572 QEINAAHLAGDQQKVMELMLKKQTLQKE 599


>gi|110799913|ref|YP_696688.1| DNA primase [Clostridium perfringens ATCC 13124]
 gi|168208710|ref|ZP_02634335.1| DNA primase [Clostridium perfringens B str. ATCC 3626]
 gi|110674560|gb|ABG83547.1| DNA primase [Clostridium perfringens ATCC 13124]
 gi|170713185|gb|EDT25367.1| DNA primase [Clostridium perfringens B str. ATCC 3626]
          Length = 595

 Score =  331 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 171/642 (26%), Positives = 292/642 (45%), Gaps = 56/642 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + I+ +     I +++   V   R   N     +   CPFH+EK+PSF  +  K 
Sbjct: 1   MRISEEIIEKVKEQNDIVDVVSDVVRLKRTGRN-----FSGLCPFHNEKSPSFSVSPDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            + CF C   G+ +SF+      +F+++V+ LA  A + +P+ D K  + +K +  L  +
Sbjct: 56  IFKCFGCGEAGNVISFVMKTKNLNFVDAVKELADRANIIIPIEDGKQSESQKKKQVLYNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A  ++  +L+N   K    Y   RGI  + ++ F LGYA D   +   +LR++GFS 
Sbjct: 116 NKQAARYYFSNLQNN--KEAKEYFLRRGIKENILKSFGLGYAKDGWQNTINYLRKQGFSN 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E I  AGL I      T YDRFRNR+IFP+   +G VI FGGR L      KYLNSPET+
Sbjct: 174 EAIEAAGLGIKS-EKGTFYDRFRNRVIFPVFDYKGSVIGFGGRVL-DDSKPKYLNSPETL 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG NLY    A+ +                +I+VEGYMD +SL Q G+ NVV+SLGT
Sbjct: 232 VFHKGTNLYALNFAIKH----------GLQERTLIIVEGYMDCISLHQYGITNVVASLGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT+ Q RLL +   R+++ +D D  G  A  + +++       G  V  + + +G+DPD
Sbjct: 282 ALTDNQARLLKRYVDRVIISYDADIAGQMATIRGLEI---LQNAGLDVRVLTVPKGKDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FIR  GK AF KLI  S  L+D    R      F+  +   +    + N ++ + +   
Sbjct: 339 EFIRANGKEAFIKLIQSSKKLIDYKLHRARIGIDFSDNNGLIKYAERVVNILSDL-NPIE 397

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + I +      Q +    +       KN  + + K       +    K  +    
Sbjct: 398 KDVYIKRISEETSIKEQAFYDLLNKNLINSNKNHENVNNK-------EEYGTKLYVEPPY 450

Query: 481 SLREAALLLTLI--NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              E ++L  L    + +++++    L +    +  ++ L   +               +
Sbjct: 451 VKCERSVLKLLCMEENHSLVKKY---LEEDDLISPNIKSLEKII---------------N 492

Query: 539 QRLCERGFGELLKQLDRQVRDAGL---WSATTEANIVD---VRQGYQQALALYKRFRLLS 592
             + E GF  L K ++ +  D  +   W    +  I+D     +   +      R   L 
Sbjct: 493 DSIEEIGFNNLGKHVEAKCEDPKVLKEWLEVKDLLILDHSSNIEVLVKDYINLIRKYKLE 552

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +++  + K++ +       +++  L+    E+  ++ ++E  
Sbjct: 553 QEQTTVLKELKRCEQNNMFKESLDLVKRAKEISDKLKELERS 594


>gi|126699058|ref|YP_001087955.1| DNA primase [Clostridium difficile 630]
          Length = 608

 Score =  331 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 159/636 (25%), Positives = 296/636 (46%), Gaps = 45/636 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN  +D I+++     I+++I +Y++  +   N     Y   CPFH EKTPSF+ N SK 
Sbjct: 13  MNDIKDIIEEIKARCDIASIISEYMNIKQSGAN-----YKGLCPFHGEKTPSFYINTSKQ 67

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIR 119
            Y CF C   GD ++F+  +    F+++V+ LA   G+ +    + +   K +       
Sbjct: 68  IYKCFGCGEGGDVINFVMKMENLDFMDAVKILANKCGIEINTNMNEETRIKIEKSKKFQD 127

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +   A  F+  +L  +++   + YL  RG+D   I+ F LG++ DS  SL   L  KG+ 
Sbjct: 128 IHTEAARFYLSNLLGSKN-LGYEYLRIRGLDDKIIKKFGLGFSLDSWNSLMNTLISKGYK 186

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ ++E GL+    +    YD+FRNR++FPI   RG +I FGGR L      KYLNSP+T
Sbjct: 187 KQDLLECGLIAKNRDGTNCYDKFRNRVMFPIFDYRGNIIGFGGRVL-DDSLPKYLNSPDT 245

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           ++F+K +NLY    A   L            S  I+LVEGYMD++SL Q G++NVV++LG
Sbjct: 246 LIFNKKQNLYGLNFARKNL-----------ESKTIVLVEGYMDLISLYQYGIKNVVATLG 294

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q  L+ + +   ++ +D D+ G++A  +AID+       G  V  + L   +DP
Sbjct: 295 TALTEQQGILIKRYADTAIISYDSDEAGIKATLRAIDI---LTKLGINVKVLDLKDAKDP 351

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D F+R YG + ++K +  S   +        +  +    +ER +        I  +    
Sbjct: 352 DEFVRKYGLSDYKKAMDVSTHYIKYKIDHLKKEFNIQKDEERVKFAKEASKIIKQLTSPV 411

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
              +Y++ + +++    +    E   YG+ + K   +++QK   +++++   V+      
Sbjct: 412 EIDFYTKYLSNQIDINVESIKREV--YGKNYNKPYNNKNQKKIEEKVIEKVEVRQDGK-- 467

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             L E  L+  ++    I +    ++ +  +   E +++ +++       +      I +
Sbjct: 468 -QLVEETLIKIMLEDKKIREIALLKVEESDFLLKESKEILNYMIK----NQELDKITIDK 522

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                   E LK+L+    ++     T E           + +    R   L  Q   + 
Sbjct: 523 LKSLNISEEYLKELNSISLNSINLENTKEI----------EGIITNIRKNSLEEQINSLL 572

Query: 600 KQIAQVTAKGE----AEKTAILISILHEVHIQIHQI 631
           ++  ++    +      +   +   + E++  +  +
Sbjct: 573 REQQELENNNDMKEVDGRVMEIALKIVEINKILKSL 608


>gi|295105508|emb|CBL03052.1| DNA primase, catalytic core [Faecalibacterium prausnitzii SL3/3]
          Length = 591

 Score =  331 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 141/583 (24%), Positives = 258/583 (44%), Gaps = 33/583 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P ++I++L     I  L+G YV   R+        Y   CPFH EKTPSF+       +
Sbjct: 2   IPHEYIEELTRRTDIVELVGSYVQLKRKGR-----LYGGLCPFHSEKTPSFYVYPDTQSF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           YCF C   GD +SF+  +   S  E+++ LA+ AG+P P  D K  +   +++ ++ + +
Sbjct: 57  YCFGCQAAGDAISFVKKINNISSGEAIKMLASRAGMPEPQEDDKTGR---LRSRVLSMNK 113

Query: 123 VATDFFHHSLKNA--RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            A  FFH  L +     ++   Y   RG+D   I  F LGYAP+   +L ++LR KG+++
Sbjct: 114 EAARFFHACLNSTVEEARQARAYWRRRGLDDKTIVRFGLGYAPNDGQALYQYLRDKGYNQ 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++  +GL     +    Y  F  R++ PI   RG +IAFGGR +      KY+NSPET+
Sbjct: 174 QELDASGLFKRSQSG-RIYCLFWKRVMTPIFDLRGNIIAFGGRVM-DDSKPKYVNSPETL 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++HK + ++    A     +              +L EGYMDV+S+ QAG+   V + GT
Sbjct: 232 VYHKSETVFAMQIAKRSASR------------RFVLCEGYMDVISMQQAGIDTAVCACGT 279

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q+R++ + +  ++L +D D+ G +A  ++++L         +V  + +   +DPD
Sbjct: 280 ALTPGQVRIISEYADEVILSYDSDEAGQKATLRSLEL---FRNSPVKVGVLQIPGAKDPD 336

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +I+ YG   F+ L+      +D   KR  +    +   +R +        +    +   
Sbjct: 337 EYIKKYGPERFQALLDGVGNALDFRLKRLRDQYDLSQDAQRLQYVKEAVEMLAERSNPTE 396

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-----GPSQRLMQSSLVKGK 475
           +  Y+  + +         + +     +      R    +     G   ++       G 
Sbjct: 397 QEVYAGRLAEETNISKTAILAQLGTAVKRAGGKYRREKNRELLRSGEMDQIKVPYSAGGS 456

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            +   +  +  LL  ++  P  L+   Q+L   ++   + ++L+  + +   E       
Sbjct: 457 QALGIASAQQRLLAAILREPRYLELAKQQLTVEQFIQPQQKELYEAMLNCSREGVELSLT 516

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
            +   + E    E L +L  Q  D           +  + +G 
Sbjct: 517 ALRAFVSEEALNE-LSRLAAQYSDVNCTPDDIRLYLDRIARGM 558


>gi|288800823|ref|ZP_06406280.1| DNA primase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332284|gb|EFC70765.1| DNA primase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 657

 Score =  331 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 151/672 (22%), Positives = 288/672 (42%), Gaps = 63/672 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  ++ +     I +++ ++V   R   N     Y   CPFH+E+TPSF  + S+G  
Sbjct: 2   IDRLTVEKIKDAANIVDVVSEFVSLRRSGAN-----YKGLCPFHNERTPSFFVSPSRGIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CFSC   G  ++F+      +++E+++ LA    + +       K  +++  +  +  +
Sbjct: 57  HCFSCGRGGTPINFIMEHEQMTYVEALRWLARKYNIEIKERELTDKERQEQSERDSMFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A D+F   L  +         Y   RG     I  F LGY    R+ L    + KG+
Sbjct: 117 NEWAADYFKQILLESEGGNSIGLQYFRSRGFRDDIISKFHLGYDVQDRHQLAREAQAKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
             + +++ G+    D S    DR+  R+IFP  S  G+++ FGGR L    KG + KY+N
Sbjct: 177 QLDFLLKTGICYKNDRS-EYIDRYSGRVIFPWLSVSGKIVGFGGRLLDSRTKGVAQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP++ ++HK + LY  + A   + +  R          + +VEGY DV+S+ Q G++NVV
Sbjct: 236 SPDSEIYHKEQLLYGIYQAKKAISREDR----------VYMVEGYTDVISMHQCGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ +Q+R+L + +  I L +DGD  G+ AA +  D++L     G  +  ++L  
Sbjct: 286 ANSGTALSVHQIRMLHRFTSNITLLYDGDAAGIHAALRGTDMILAE---GMNIKVLILPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +    F++ I +   +  + +K          P +R+E    +   I  +
Sbjct: 343 GDDPDSFARKHSSADFKQYIEDHQ-VDFIQFKTNLMLNGVTDPAKRSEAINSIVQSIAVV 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK-KNARHRDQKGPSQRLMQSSLVKG 474
            +Q LR  Y      RL       I   +   R  + +  +  + +        ++  K 
Sbjct: 402 PNQILRDTYIHDCAQRLNIAESTLINTMNKLIREAQDRMNKTPNAEAQRANSTSTTTQKY 461

Query: 475 KLSKKPSLREAALLLTLINHPAIL--QEQYQE------------------LADIRYDNNE 514
             +      E  L+  +I H   +  ++   E                    ++R+  + 
Sbjct: 462 TNNPSIPKVETMLMQVIIRHGDFIIYRDIEDEEGNLINLTVAEWINYSLAAENLRFSADI 521

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL---------DRQVRDAGLWSA 565
             ++     +   +   F  E+      +    +L  +L         +++       + 
Sbjct: 522 YNRVLDETLAHLQDDN-FSAEQYFIHHNDIEISQLATELILDKYQYIREQKEESTVKQNV 580

Query: 566 TTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
           + EA +    +  +  +    L   F LL R+ ++I+ +I Q       E+ A L+    
Sbjct: 581 SDEARMEKETEKLRNEVLHLLLDFHFDLLERRLQQIKMEITQPNHT--PERMASLMKEFR 638

Query: 623 EVHIQIHQIESQ 634
           +   + +++  Q
Sbjct: 639 DTQQKRNELAQQ 650


>gi|189463796|ref|ZP_03012581.1| hypothetical protein BACINT_00129 [Bacteroides intestinalis DSM
           17393]
 gi|189438746|gb|EDV07731.1| hypothetical protein BACINT_00129 [Bacteroides intestinalis DSM
           17393]
          Length = 694

 Score =  331 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 169/696 (24%), Positives = 287/696 (41%), Gaps = 93/696 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L  + I +++  +V   +R  N     Y   CPFHD+KTPSF+ + SKG  
Sbjct: 2   IDQPTIDRILDAVQIVDIVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPSKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CFSC   G+ + F+      S+ E+++ LA   G+ +   +   E+K  +  +  L  +
Sbjct: 57  KCFSCGKGGNAVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSSEEKLMQSERESLFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y   RG     IE F+LGY  +S  ++ +   +KGF
Sbjct: 117 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDAMAQEAIKKGF 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 177 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLSSATKGVKVKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+GV+NVV
Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q++L+ + +  I + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 286 ASSGTALTPGQIKLIHRFTNNITVLYDGDVAGIKASLRGIDM---LLEEGMNIKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPDSF R +  T F+K I ++               +   P +RAEL  +L   I+ I
Sbjct: 343 GEDPDSFARKHNATEFQKFIQDNETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISII 402

Query: 416 KDQKLRYYYSQAIRDRLQQ-------------LFQKYITEHSGYGRYWKKNARHRDQKGP 462
            +  +R  Y +     L+                Q             K NA     + P
Sbjct: 403 PEAIVRDVYIKECSQLLRIEDKLLVSEVAKRRETQAEKQAEQRNRETRKNNAARDATQAP 462

Query: 463 SQRLMQSSLV--------------------------------KGKLSKKPSLREAALLLT 490
               MQ                                    +GK  ++    E  +L  
Sbjct: 463 LPDGMQPPYPEDMPPYPMDGEMPDGGAPLPPEAAEYVSYIPQEGKEGQEFYKYERLILQM 522

Query: 491 LINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKY 531
           ++ +                   + +    +L   ++ + N   +++ +        + +
Sbjct: 523 VVRYGEKVLCNVPDEEGKEIPITVTEYVVNDLKEDELAFHNPLHRQMLTEAAEHIHNEGF 582

Query: 532 FLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                      +    +L  +L  DR         A       +        L +  +F 
Sbjct: 583 TAERYFLAH-PDPIISKLSTELIADRYQLSKYHSKAQRLVTDEERLFELVPTLMINFKFA 641

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           ++S + + +   +       + E+   ++    E+ 
Sbjct: 642 IISEEMKHMMYALQDPAVANDEEQCTSIMKRYSELR 677


>gi|325281153|ref|YP_004253695.1| DNA primase [Odoribacter splanchnicus DSM 20712]
 gi|324312962|gb|ADY33515.1| DNA primase [Odoribacter splanchnicus DSM 20712]
          Length = 645

 Score =  331 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 162/658 (24%), Positives = 295/658 (44%), Gaps = 50/658 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I+ +     I  +I  +V   +R  N     Y  CCPFH+EKT SF  + SKG Y
Sbjct: 2   IDQATIQKIFDAADIYEVISDFVSLKKRGVN-----YVGCCPFHNEKTGSFTVSPSKGIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
            CF C   G+ ++F+      S++E+++ LAA   + +   +    +K++   +  ++ +
Sbjct: 57  KCFGCGKGGNAVNFIMEHEQLSYVEALRWLAAKYNIIIEEKELSEHEKQEKSERESMLIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A +FF   L +  + +     Y   RG+D   IE F LGY P++     +   +KG+
Sbjct: 117 TNYAEEFFVQQLLHTDEGKSVGLGYFRRRGLDDRTIEKFGLGYCPEAWDGFTKAALEKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
            +E +++ GL I+  +    +DRFR R++FPIR   G++IAFGGR ++  +   KYLNSP
Sbjct: 177 KKEFLVKTGLTIE--SERGLFDRFRARVMFPIRDLAGKIIAFGGRIMTNDKKSAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK + LY  + A   + +  R            LVEGY+DV+S  Q G++N V+S
Sbjct: 235 ESEIYHKSRTLYGIYFAKKSIVQHNR----------CYLVEGYLDVISFHQKGIENTVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GT+LT  Q+RL+ +L+P + + +DGD  G++A+ + IDLVL     G  V  V L  GE
Sbjct: 285 SGTSLTIEQIRLIRRLTPNVTIIYDGDAAGIKASLRGIDLVLEE---GLNVRVVSLPDGE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS+ + +      + I            +    ++ + P ERA+L   +   I+ I D
Sbjct: 342 DPDSYAQAHTAEEVLEYISGHETDFIHFKTKLLLTQAGSDPIERAKLITDIVRSISLIPD 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R  Y Q   ++++   +    E +   +    +      K P+Q+  + +L   K  
Sbjct: 402 TITRSVYVQETANQMKVEEKLLYNEIARIRKEKVGDPTPLPYKSPTQQPPRVTLTPAKTV 461

Query: 478 KKPS--LREAALLLTLINHP--AILQE--------------QYQELADIRYD--NNELQK 517
           +       E  L+  L+      + +E                 ELA+   +  N  L++
Sbjct: 462 QVTPCDTEEMVLVRYLLLFGGQELYEEERDGMPYSVTVGEYIIHELAEDELEMLNPRLRE 521

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA--NIVDVR 575
           + +    ++    +   +             +   L      + LW+    +      + 
Sbjct: 522 IQNEYRKNYRNPGFIPSKYFIGNPDVSICELVADILSEPYELSKLWTLKDSSMRTEEMML 581

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI---SILHEVHIQIHQ 630
                 +    + R +     E +++I +    G+ E+    I   + + +V  +I++
Sbjct: 582 DELLPKIVDNYKMRRVEILCREADEKILEFQNAGDMERLVEWIKKKNAMIKVRSRINE 639


>gi|24379276|ref|NP_721231.1| DNA primase [Streptococcus mutans UA159]
 gi|24377194|gb|AAN58537.1|AE014923_1 putative DNA primase [Streptococcus mutans UA159]
          Length = 592

 Score =  331 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 157/635 (24%), Positives = 270/635 (42%), Gaps = 49/635 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   ++ IK++   I I ++IG+ V   R   N     Y   CPFH EKTPSF+  + + 
Sbjct: 1   MVVDKEKIKEIKDSINIVDVIGEVVSLSRSGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIR 119
           F++CF C   GD   F+      SF+ESVQ LA  +G+ + + D   E KKE     L  
Sbjct: 56  FFHCFGCGRSGDVFKFVEDYRNISFLESVQVLAERSGINVTLQDKSQEVKKEHPHQKLFN 115

Query: 120 LIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           +   A  F+   LK  +  +    YL ERG+    I  FK+G AP+    L + + +K  
Sbjct: 116 INGDANKFYQAVLKTTKVGETARQYLYERGLTDELITYFKIGLAPNEYDYLYQAMLKKYD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV----KYL 234
                I    L +  +S + YD FRNR++FP+    G +I F GR  ++ ++     KY 
Sbjct: 176 E--DTIINSGLFNLSDSNSIYDAFRNRIMFPLTDEFGHIIGFSGRIWTEEDTSKKLAKYK 233

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+  TI+F+K   LY+   A    +K             + L+EG+MDV++  +AG+ N 
Sbjct: 234 NTRSTIIFNKSYELYHLDKARTAAKK----------EHELYLMEGFMDVIAAYRAGIPNA 283

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   ++ L K + +++L +DGD  G  A  K+++L+         V  V + 
Sbjct: 284 VASMGTALTPEHVKHLRKFTKKVILTYDGDKAGQNAIAKSLNLL-----SNMAVEIVRIP 338

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD FI+   +   EKL+ ++       W    +  + +      +    +   I  
Sbjct: 339 GQMDPDEFIKENSEEELEKLLKQARISSAEFWIEHLKPENIDNLQAEIDYVEKIAKVIAA 398

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                 +  Y   + + L       + +     R   ++     +    Q L+   L   
Sbjct: 399 SPSITAQNTYINKVAEFLPDFDYLQVEQAVNNERLQMRSQISEQESANQQVLID--LPVT 456

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K     +  E+ L   L++H  +L E     A  ++   ELQ+L+  +     E   +  
Sbjct: 457 KQLTALTKAESQLFHRLLHHDYLLNEFRNR-AHFKFTTPELQELYQ-ILKTNGEINAYDL 514

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            ++  +L E  +  L + L              E    ++RQ   Q     +R     ++
Sbjct: 515 SQLSNQLQETYYRVLEENL------------PEEIAEDEIRQIEDQIDKCLQR-----QE 557

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             +  K I + +  G+ +     ++ L      + 
Sbjct: 558 MRKQSKAIRESSNHGDVDTAVEGLAALIAQKRNME 592


>gi|168215635|ref|ZP_02641260.1| DNA primase [Clostridium perfringens NCTC 8239]
 gi|182382362|gb|EDT79841.1| DNA primase [Clostridium perfringens NCTC 8239]
          Length = 595

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 170/642 (26%), Positives = 292/642 (45%), Gaps = 56/642 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + I+ +     I +++   V   R   N     +   CPFH+EK+PSF  +  K 
Sbjct: 1   MRISEEIIEKVKEQNDIVDVVSDVVRLKRAGRN-----FSGLCPFHNEKSPSFSVSPDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            + CF C   G+ +SF+      +F+++V+ LA  A + +P+ D K  + +K +  L  +
Sbjct: 56  IFKCFGCGEVGNVISFVMKTKNLNFVDAVKELADRANIIIPIEDGKQSESQKKKQVLYNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A  ++  +L+N   K    Y   RGI  + ++ F LGYA +   +   HLR++GFS 
Sbjct: 116 NKQAARYYFSNLQNN--KEAKEYFLRRGIKENILKSFGLGYAKEGWQNTINHLRKQGFSN 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E I  AGL I      T YDRFRNR+IFP+   +G VI FGGR L      KYLNSPET+
Sbjct: 174 EAIEAAGLGIKS-EKGTFYDRFRNRVIFPVFDYKGSVIGFGGRVL-DDSKPKYLNSPETL 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG NLY    A+ +                +I+VEGYMD +SL Q G+ NVV+SLGT
Sbjct: 232 VFHKGTNLYALNFAIKH----------GLQERTLIIVEGYMDCISLHQYGITNVVASLGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT+ Q RLL +   R+++ +D D  G  A  + +++       G  V  + + +G+DPD
Sbjct: 282 ALTDNQARLLKRYVDRVIISYDADIAGQMATIRGLEI---LQNAGLDVRVLTVPKGKDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FIR  GK AF KLI  +  L+D    R      F+  +   +    + N ++ + +   
Sbjct: 339 EFIRANGKEAFIKLIQSAKKLIDYKLHRARIGIDFSDNNGLIKYAERVVNILSDL-NPIE 397

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + I +      Q +    +       KN  + + K       +    K  +    
Sbjct: 398 KDVYIKRISEETSIKEQAFYDLLNKNLINSNKNHENVNNK-------EEYGTKLYVEPPY 450

Query: 481 SLREAALLLTLI--NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              E ++L  L    + +++++    L +    +  ++ L   +               +
Sbjct: 451 VKCERSVLKLLCMEENHSLVKKY---LEEDDLISPNIKSLEKII---------------N 492

Query: 539 QRLCERGFGELLKQLDRQVRDAGL---WSATTEANIVD---VRQGYQQALALYKRFRLLS 592
             + E GF  L K ++ +  D  +   W    +  I+D     +   +      R   L 
Sbjct: 493 DSIEEIGFNNLGKHVEAKCEDPKVLKEWLEVKDLLILDHSSNIEVLVRDYINLIRKYKLE 552

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +++  + K++ +       +++  L+    E+  ++ ++E  
Sbjct: 553 QEQTTVLKELKRCEQNNMFKESLDLVKRAKEISDKLKELERS 594


>gi|159027957|emb|CAO87120.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 626

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 153/639 (23%), Positives = 282/639 (44%), Gaps = 40/639 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I+++   I I +LI + V   +R       +Y   CPFH+EK+PSF  + +K  
Sbjct: 5   RLHPDTIEEVKQRIDIVDLISERVVLKKRGR-----EYVGLCPFHEEKSPSFTVSPAKQM 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117
           YYCF C   G+ + F   +   SF E V  LA    +P+         ++E++  ++  L
Sbjct: 60  YYCFGCGAGGNGIKFFMEVGKQSFSEVVFDLARRYQIPIKTLAVEQRQELEQQLSLKEQL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLD-ERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175
             ++ VA  F+ H+L   + ++   YL  +R + +  I  F+LGY+P+   +L  + + Q
Sbjct: 120 YEIMAVAVSFYQHALSQPQGEKALDYLKVQRQLTAETITTFQLGYSPEGWETLYRYLVEQ 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K +    + + GL+    N +  YD+FR+RL+ PI  S+G+ IAFG R+L   E  KYLN
Sbjct: 180 KRYPVALVEQVGLIKARQNGSGYYDQFRDRLMIPIFDSQGRAIAFGSRSL-GNEQPKYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP+T LF KGK L+    A   +                I+VEGY D ++L  AG+ NVV
Sbjct: 239 SPDTPLFEKGKTLFALDRAKQAI----------IQQDLAIVVEGYFDAIALHAAGITNVV 288

Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352
           + LGTAL++ Q++LL +   S +I+  FD D  G++A  +AI+ +   +  G      + 
Sbjct: 289 ACLGTALSQEQIKLLLRYSESKQIIFNFDADQAGIKATQRAIEEINSLVYSGQVNLKILN 348

Query: 353 LSRGEDPDSFI--RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           L  G+D D F+  R  G  ++ +LI +S   +D    +   N+         ++   + +
Sbjct: 349 LPDGKDADEFLKSRADGVNSYRELIEKSPFWIDWQISQMLVNKDLKQGLHFQQVANSIVS 408

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  + D   R +Y     + L Q     +              +    +G S  +   +
Sbjct: 409 LLQKLIDSNQRTFYLDYCAEILAQKDATRLPYILKNLSK-----QVNKPQGKSPAIKSKN 463

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR--YDNNELQKLWSFLFSDFVE 528
           ++           E  LLL  ++ P   +   + L +    ++  + + LW  +     E
Sbjct: 464 ILDKSEKNGTEKAEWLLLLIYLHSPEHRRLICELLDEKDLIFNVPDYRWLWQVILEL--E 521

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            +   P ++   L          + +R        +  T   I+   +  + A+   ++ 
Sbjct: 522 TQITKPRDLMSALQNHLLMITTDK-NRDFNSLFHLNEHTSQEILQPEEQIKDAIIAMEKI 580

Query: 589 RLLSRQK---EEIEKQIAQVTAKGEAEKTAILISILHEV 624
            L+  ++   E++   +     +   ++    ++ L  +
Sbjct: 581 SLMEYRRYCQEQLINALDGNQREFYQQEFYQTVNKLIAI 619


>gi|319939162|ref|ZP_08013526.1| DNA primase [Streptococcus anginosus 1_2_62CV]
 gi|319812212|gb|EFW08478.1| DNA primase [Streptococcus anginosus 1_2_62CV]
          Length = 591

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 146/634 (23%), Positives = 265/634 (41%), Gaps = 51/634 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++   + I  +IG+ V   +   N     Y   CPFH EKTPSF+  + K FY
Sbjct: 2   IDKEIISNIKNSVNIVEIIGEVVALTKAGRN-----YLGLCPFHGEKTPSFNVVEEKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG+PL +   + E+  +      L  +
Sbjct: 57  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGIPLEIEHNRKEQSTRTHPHQALYDI 116

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL ERG+    I+ F++G AP+    L   +  K   
Sbjct: 117 HAEAARFYHAVLMTTKIGEEARSYLYERGLTDEVIKHFQIGLAPNESNYLYRSVSGKFDE 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK----YLN 235
              +      +  +N    YD F+NR++FP+ + +GQVIAF GR     +  +    Y N
Sbjct: 177 PAIMNSGLFNLADNNLV--YDAFQNRIMFPLANDKGQVIAFSGRIWQASDIEQKVAKYKN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  I L+EG+MDV++  +AG++N V
Sbjct: 235 SRSTPIFNKSYELYHLDKAKATIKK----------SHEIYLMEGFMDVIAAYRAGIENAV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   +  L K + +I+L +DGD  G  A  KA++ +         V  V +  
Sbjct: 285 ASMGTALTHEHVEHLRKFAKKIILTYDGDKAGQAATAKALNELH-----NLSVEIVRVPD 339

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD FI+       + L+ ++            +  +      + E    +   I  +
Sbjct: 340 NMDPDEFIKKNSADDLQNLLTKTRISDIEFLLNYLKPDNIENLQAQIEFVEQMSPLIAQV 399

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +    +  Y   + + L     + + +     R   +  + +       RL    +   +
Sbjct: 400 QSITAQNSYIYMLAELLPDFDYQQVEQAVNNHRLVNRREQQQQSHQQVSRL---DIPVTQ 456

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E+ LL  +I++P IL +  +   D  +   ELQ L+  L             
Sbjct: 457 QVSRLIKAESHLLQRMIDNPVILNDY-RLRKDFHFVTVELQTLYDIL------------- 502

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           + +  +  +   E    + +        +   E +  ++ +  Q      +   LL ++ 
Sbjct: 503 KTNGEVTPQDLSEQNDSVQQAWYRVLEENLPEEVSEQELIEVEQT-----RDKELLRKEN 557

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K++ + +  G+A+     +        ++ 
Sbjct: 558 QLIGKKVREASHSGDADTALEELERFIAQKRRME 591


>gi|254975008|ref|ZP_05271480.1| DNA primase [Clostridium difficile QCD-66c26]
 gi|255092396|ref|ZP_05321874.1| DNA primase [Clostridium difficile CIP 107932]
 gi|255314136|ref|ZP_05355719.1| DNA primase [Clostridium difficile QCD-76w55]
 gi|255516814|ref|ZP_05384490.1| DNA primase [Clostridium difficile QCD-97b34]
 gi|255649916|ref|ZP_05396818.1| DNA primase [Clostridium difficile QCD-37x79]
          Length = 596

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 158/636 (24%), Positives = 296/636 (46%), Gaps = 45/636 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN  +D I+++     I+++I +Y++  +   N     Y   CPFH EKTPSF+ N SK 
Sbjct: 1   MNDIKDIIEEIKARCDIASIISEYMNIKQSGAN-----YKGLCPFHGEKTPSFYINTSKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIR 119
            Y CF C   GD ++F+  +    F+++V+ LA   G+ +    + +   K +       
Sbjct: 56  IYKCFGCGEGGDVINFVMKMENLDFMDAVKILANKCGIEINTNMNEETRIKIEKSKKFQD 115

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +   A  F+  +L  +++   + YL  RG+D   I+ F LG++ DS  SL   L  KG+ 
Sbjct: 116 IHTEAARFYLSNLLGSKN-LGYEYLRIRGLDDKIIKKFGLGFSLDSWNSLMNTLISKGYK 174

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ +++ GL+    +    YD+FRNR++FPI   RG +I FGGR L      KYLNSP+T
Sbjct: 175 KQDLLDCGLIAKNRDGTNCYDKFRNRVMFPIFDYRGNIIGFGGRVL-DDSLPKYLNSPDT 233

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           ++F+K +NLY    A   L            S  I+LVEGYMD++SL Q G++NVV++LG
Sbjct: 234 LIFNKKQNLYGLNFARKNL-----------ESKTIVLVEGYMDLISLYQYGIKNVVATLG 282

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q  L+ + +   ++ +D D+ G++A  +AID+       G  V  + L   +DP
Sbjct: 283 TALTEQQGILIKRYADTAIISYDSDEAGIKATLRAIDI---LTKLGINVKVLDLKDAKDP 339

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D F+R YG + ++K +  S   +        +  +    +ER +        I  +    
Sbjct: 340 DEFVRKYGLSDYKKAMDVSTHYIKYKIDHLKKEFNIQKDEERVKFAKEASKIIKQLTSPV 399

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
              +Y++ + +++    +    E   YG+ + K   +++QK   +++++   V+      
Sbjct: 400 EIDFYTKYLSNQIDINVESIKREV--YGKNYNKPYNNKNQKKIEEKVIEKVEVRQDGK-- 455

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             L E  L+  ++    I +    ++ +  +   E +++ +++       +      I +
Sbjct: 456 -QLVEETLIKIMLEDKKIREIALLKVEESDFLLKESKEILNYMIK----NQELDKITIDK 510

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                   E LK+L+    ++     T E           + +    R   L  Q   + 
Sbjct: 511 LKSLNISEEYLKELNSISLNSINLENTKEI----------EGIITNIRKNSLEEQINSLL 560

Query: 600 KQIAQVTAKGE----AEKTAILISILHEVHIQIHQI 631
           ++  ++    +      +   +   + E++  +  +
Sbjct: 561 REQQELENNNDMKEVDGRVMEIALKIVEINKILKSL 596


>gi|88810992|ref|ZP_01126248.1| DNA primase [Nitrococcus mobilis Nb-231]
 gi|88791531|gb|EAR22642.1| DNA primase [Nitrococcus mobilis Nb-231]
          Length = 581

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 175/631 (27%), Positives = 284/631 (45%), Gaps = 59/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    I ++IG+ +   R   N     + A CPFH EKTPSF  + +K F
Sbjct: 4   KIPERFIDELLSRTDIVDVIGERLQLKRTGNN-----HHALCPFHGEKTPSFTVSQTKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   G  + FL       F E+V RLA   G+ LP      E+K +    L R++
Sbjct: 59  YHCFGCGAHGTAIRFLMEYERMDFREAVSRLAWRVGLELPAAAR--EEKVERHEKLYRVV 116

Query: 122 EVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             A + + H L ++ + +R   YL+ RG+++     F+LG+AP            +  SE
Sbjct: 117 GRAAELYRHWLHRHPQGRRALGYLEARGLNAEIAARFELGFAPPGWN-----HLARAISE 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
              + A  L+       +YDRFR+R++FPIR  RG++I FGGR+L +G+  KYLNSP++ 
Sbjct: 172 HHDLVAVGLLVQREGKRTYDRFRDRIMFPIRDQRGRIIGFGGRSLGEGQP-KYLNSPDSP 230

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG+ LY     L   ++             I++VEGYMDV++L Q G+  VV++LGT
Sbjct: 231 IFHKGRELYGLDKVLESDRRPT----------DILIVEGYMDVVALAQYGLPRVVATLGT 280

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A +  Q+  L++L+  ++ CFDGD  G +AA++A+   L  L  G +  F+ L  GEDPD
Sbjct: 281 ATSTTQVERLFRLTRDLIFCFDGDAAGRQAAWRALVNTLPGLQGGRQARFLFLPEGEDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           SF+R +G+ A   ++ E+ PL D L +R T      + D RA L       +  +     
Sbjct: 341 SFVRSHGQAATAAVLREAQPLSDFLLERLTVGVDMTSIDGRARLVDEALPLLQRLPVDVF 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG----PSQRLMQSSLVKGKL 476
           R    + +   L QL   YI    G G      +  R  +     P+ R     L    L
Sbjct: 401 RRMLIERLAG-LAQLEPDYIEACVGTGERSGLKSVPRSARRLGGMPTVRRTPVRLALALL 459

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +P+L +      L++   +   +   +  +      L+ +          + +     
Sbjct: 460 LHRPALAQ------LVDDDEVDSLRDLTIPGLPLLVQLLELIHM--------EPHISSGA 505

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + +R  +      L +L         +    E      R    +  AL  R     ++ +
Sbjct: 506 LLERYHDSEHATALWKLATWDPMVPDFGMEAE-----FRDALARVRALLHR-----KRLQ 555

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            + +++ +       E TA        +   
Sbjct: 556 YLNERLQRG------ELTAAEWQEWVHLKRH 580


>gi|288803263|ref|ZP_06408697.1| DNA primase [Prevotella melaninogenica D18]
 gi|288334304|gb|EFC72745.1| DNA primase [Prevotella melaninogenica D18]
          Length = 639

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 158/661 (23%), Positives = 279/661 (42%), Gaps = 58/661 (8%)

Query: 13  IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72
               I  ++  +V   +  T      Y   CPFHD++TPSF  +  KG Y CFSC   G+
Sbjct: 2   NASNIVEVVSDFVSLRKTGT-----SYKGLCPFHDDRTPSFSVSPVKGVYKCFSCGAAGN 56

Query: 73  HLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFHH 130
            + F+      ++ E+++ LA    + +       + +++E  +  +  + E A  +F+ 
Sbjct: 57  AVKFIMEHEQMTYPEALKWLANKYHIEVHERELTNEEKQQENERESMFLVNEWAAKYFND 116

Query: 131 SLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
            L N  D       Y   RG     I  F+LG+   SR++  +   + GF  + +I+ GL
Sbjct: 117 ILHNDVDGMAIGMQYFRSRGFRDDIIRKFQLGFCLSSRHAFADAALKAGFQRDFLIKTGL 176

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLNSPETILFHKG 245
                 +    DRF  R++FP  S  G+V AFGGR L    KG S KY+NSP+++++HK 
Sbjct: 177 C-FERENGELIDRFNGRVMFPWVSVSGKVTAFGGRLLDSRTKGVSQKYVNSPDSVIYHKE 235

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
           + LY  F A   + K             + +VEGY DV+S+ Q G++NVV++ GTAL+ +
Sbjct: 236 RELYGIFQAKKAIAK----------HDLVYMVEGYTDVVSMHQCGIENVVANSGTALSVH 285

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
           Q+RLL + +  IVL +DGD+ G  AA +  D+    L  G  V  +LL  G+DPD F R 
Sbjct: 286 QIRLLRRFTSNIVLLYDGDEAGQHAALRGTDM---LLAEGMNVKVLLLPDGKDPDEFARS 342

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
           Y    F K I ++     +++K     +    P +R+E    +   I+ IKD  LR  Y 
Sbjct: 343 YSADDFRKYIEDNQTDF-IVFKINVLLKGVTDPIKRSEAVGSIVQSISVIKDPILRDTYI 401

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP----- 480
           +   +R     +  + + +      ++      Q    Q+     + + +  ++      
Sbjct: 402 RECANRTGVSERTLMEQMNRNIYSNREQQTREQQTREQQQHRTVVIEEQQREEEVDTSTQ 461

Query: 481 --SLREAALLLTLINHPA--ILQEQYQEL-------------------ADIRYDNNELQK 517
             S  E  L+  +I      I ++   E                     ++ + N    K
Sbjct: 462 LASKVEEMLIQAVIKDGEKVIFRDVKDENSGETYNLTVAQYIAYDLGSDNLGFSNELYTK 521

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           +         E+ +   E   Q   +     +  +L    R     S   +     +R  
Sbjct: 522 ILQEAVEHCGEEGFKAEEYFTQH-ADINIASVAVRL-SVDRFQLAESLQVKETEQTLRDR 579

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
               +A + R   +S   +E+ +++ QV    E ++    I     +  ++ +      +
Sbjct: 580 VIHLVADF-RLEYVSSHLKELNERLLQVKDPQEMQEVMSEIMRTQNLRNELAKKTGGNIL 638

Query: 638 I 638
           +
Sbjct: 639 V 639


>gi|320547038|ref|ZP_08041337.1| DNA primase [Streptococcus equinus ATCC 9812]
 gi|320448323|gb|EFW89067.1| DNA primase [Streptococcus equinus ATCC 9812]
          Length = 608

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 150/634 (23%), Positives = 262/634 (41%), Gaps = 48/634 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I ++   + I ++IG+ V+  R   N     Y   CPFH EKTPSF+  + K F
Sbjct: 17  AIDKELITEIKNSVNIVDVIGEVVNLTRAGRN-----YIGLCPFHKEKTPSFNVIEDKQF 71

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120
           ++CF C   GD   FL      SF+ESV  +A  AG+PL V   +   K +     LI +
Sbjct: 72  FHCFGCGKSGDVYKFLEEYRQISFLESVHLVAERAGIPLQVETQQMQSKPKNPNQVLIDI 131

Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            + A  F++  LK  +  +    YL +RG+    I+ F +G +P+    L + L ++ + 
Sbjct: 132 HKDAAKFYNAVLKTTKEGQEAKAYLAQRGLTDDLIDYFNIGLSPNEPDFLYQSLAKR-YE 190

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYLN 235
           E  ++ +GL    + +   YD F+NR++FP+    GQV+AF GR  +K +      KY N
Sbjct: 191 ENALMASGLFNLSERTNRVYDAFQNRIMFPLTDDTGQVVAFSGRIWTKEDLEAKQAKYKN 250

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +  T LF+K   LY+   A   + K             + L+EG+MDV++  +AG++N V
Sbjct: 251 TRSTALFNKSYELYHLDKARPVMSKK----------HEVYLMEGFMDVIAAYRAGIENAV 300

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   +R L +   +++L +DGD+ G  A  K+++L+    +       V +  
Sbjct: 301 ASMGTALTPEHVRHLKRYVKKVILTYDGDNAGQNAIAKSLELLKDFNVE-----IVRVPE 355

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD FI+     A   L+  S       +    +  + +           +   I   
Sbjct: 356 QMDPDEFIQKNSPDALANLLENSRISSTEFFIHYLKPENSDNLQAEIAYVEQISKIIAQS 415

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                +  Y   + D L       + +     R   ++A         Q +    L   K
Sbjct: 416 PSITAQNSYINMVADSLPDFDYYQVEQSVNSERLQNRSA--LQTGAVQQSVTVVELPISK 473

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E  LL  L+ H  +L E   +  +  +D  ELQ L+  L             
Sbjct: 474 NISAIMKAEGQLLQRLMKHDYLLNEFRNQ-EEFIFDTKELQNLYDILMQQGE-------- 524

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                +      +L  +  +        +   E    ++ +  Q+   L +      R  
Sbjct: 525 -----ITSYDLAQLDGRTRQMYYRVLEENLPDEVAPNEIEEIIQKRNRLLQ-----ERDL 574

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++  K I + +  G+ +     +  L     ++ 
Sbjct: 575 QKQSKLIRESSNLGDVDAALAALENLIAQKRKME 608


>gi|238927760|ref|ZP_04659520.1| DNA primase [Selenomonas flueggei ATCC 43531]
 gi|238884476|gb|EEQ48114.1| DNA primase [Selenomonas flueggei ATCC 43531]
          Length = 594

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 149/634 (23%), Positives = 268/634 (42%), Gaps = 49/634 (7%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
             F++ +     I  ++  YV   R+ +      YW CCPFH EKT SF    ++GF+YC
Sbjct: 7   EAFVQQVRARTDILAVVQGYVSLKRKGS-----RYWGCCPFHSEKTASFSVVPAEGFFYC 61

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--DLIRLIE 122
           F CH  GD   FLS +   +  E++ R A   G+  P       ++ +++   DL R+  
Sbjct: 62  FGCHAGGDAFKFLSLIEHITPFEAILRQAEQLGIERPARQRDAREEARLRALDDLRRVNA 121

Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           +A DFFH+ L           YL  RGI   AIE + +G+APD+   L +  +++G ++ 
Sbjct: 122 LARDFFHNCLTMTRYGAAGKAYLAGRGITDEAIERYGIGFAPDAWSKLSDAFQKRGVAQH 181

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +++AGL +  +     YDRFR R+I PI   RG+++ FGGR L      KYLN+ ET +
Sbjct: 182 VLVDAGLAVRRERGGGIYDRFRGRVIIPIADERGRIVGFGGRAL-GDAQPKYLNTAETPV 240

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+K K L+    A + + +          + + I+VEGYMD ++  +AGV+NVV++LGT+
Sbjct: 241 FNKRKLLFGMDRAHSAIAR----------AGYTIVVEGYMDAIAAWEAGVENVVATLGTS 290

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T     LL + +PRIV C+D D  G  A  +A+  V         V  +LL  G+DPD 
Sbjct: 291 FTSDHAALLLRRAPRIVFCYDSDRAGQEATLRALAAVRGRAA---EVRVLLLPDGKDPDE 347

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           ++R +G  AF  L+  ++P      +        +  + +      +   +  + D   R
Sbjct: 348 YVRTHGAEAFRALVETAVPAPAFRLRHIRAQ-MADGIEGQRAALRAMLPVLAEL-DDVER 405

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y +                   + R          +               +  +   
Sbjct: 406 AAYVRRTAAEFFLDEGVVADALRRFLRRGGTAESGTAEPT-------RIAAVRQPDRALQ 458

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                L+  + + P  L      +    + ++    +   + +   +      + I  + 
Sbjct: 459 RAGRQLIAAVWHDPDFLASITDAVPLEAFPDDFFGTILRAIDAHIHDGGALNADFIAAQP 518

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            E G          +V  A +  A ++   +D    +        R   L+    +  ++
Sbjct: 519 PEMG---------AEVTRALVEDAPSKDTCMDALAAF--------RRVYLTAALAQHTRR 561

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            A++  +         ++ +  +  ++ + ++QE
Sbjct: 562 -AEMMMQEGKAGYVDELNAVKRIQDELARGDAQE 594


>gi|168212955|ref|ZP_02638580.1| DNA primase [Clostridium perfringens CPE str. F4969]
 gi|170715568|gb|EDT27750.1| DNA primase [Clostridium perfringens CPE str. F4969]
          Length = 595

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 171/642 (26%), Positives = 292/642 (45%), Gaps = 56/642 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + I+ +     I +++   V   R   N     +   CPFH+EK+PSF  +  K 
Sbjct: 1   MRISEEIIEKVKEQNDIVDVVSDVVRLKRAGRN-----FSGLCPFHNEKSPSFSVSPDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            + CF C   G+ +SF+      +F+++V+ LA  A + +P+ D K  + +K +  L  +
Sbjct: 56  IFKCFGCGEAGNVISFVMKTKNLNFVDAVKELADRANIIIPIEDGKQSESQKKKQVLYNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A  ++  +L+N   K    Y   RGI  + ++ F LGYA +   +   HLR++GFS 
Sbjct: 116 NKQAARYYFSNLQNN--KEAKEYFLRRGIKENILKSFGLGYAKEGWQNTINHLRKQGFSN 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E I  AGL I      T YDRFRNR+IFP+   +G VI FGGR L      KYLNSPET+
Sbjct: 174 EAIEAAGLGIKS-EKGTFYDRFRNRVIFPVFDYKGSVIGFGGRVL-DDSKPKYLNSPETL 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG NLY    A+ +                +I+VEGYMD +SL Q G+ NVV+SLGT
Sbjct: 232 VFHKGTNLYALNFAIKH----------GLQERTLIIVEGYMDCISLHQYGITNVVASLGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT+ Q RLL +   R+++ +D D  G  A  + +++       G  V  + + +G+DPD
Sbjct: 282 ALTDNQARLLKRYVDRVIISYDADIAGQMATIRGLEI---LQNAGLDVRVLTVPKGKDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FIR  GK AF KLI  S  L+D    R      F+  +   +    + N ++ + +   
Sbjct: 339 EFIRANGKEAFIKLIQSSKKLIDYKLHRARIGIDFSDNNGLIKYAERVINILSDL-NPIE 397

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + I +      Q +    +       KN  + + K       +    K  +    
Sbjct: 398 KDVYIKRISEETSIKEQAFYDLLNKNLINSNKNHENVNNK-------EEYGTKLYVEPPY 450

Query: 481 SLREAALLLTLI--NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              E ++L  L    + +++++    L +    +  ++ L   +               +
Sbjct: 451 VKCERSVLKLLCMEENHSLVKKY---LEEDDLISPNIKSLEKII---------------N 492

Query: 539 QRLCERGFGELLKQLDRQVRDAGL---WSATTEANIVD---VRQGYQQALALYKRFRLLS 592
             + E GF  L K ++ +  D  +   W    +  I+D     +   +      R   L 
Sbjct: 493 DSIEEIGFNNLGKHVEAKCEDPKVLKEWLEVKDLLILDHSSNIEVLVKDYINLIRKYKLE 552

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +++  + K++ +       +++  L+    E+  ++ ++E  
Sbjct: 553 QEQTTVLKELKRCEQNNMFKESLDLVKRAKEISDKLKELERS 594


>gi|110802989|ref|YP_699285.1| DNA primase [Clostridium perfringens SM101]
 gi|110683490|gb|ABG86860.1| DNA primase [Clostridium perfringens SM101]
          Length = 595

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 171/642 (26%), Positives = 292/642 (45%), Gaps = 56/642 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + I+ +     I +++   V   R   N     +   CPFH+EK+PSF  +  K 
Sbjct: 1   MRISEEIIEKVKEQNDIVDVVSDVVRLKRAGRN-----FSGLCPFHNEKSPSFSVSPDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            + CF C   G+ +SF+      +F+++V+ LA  A + +P+ D K  + +K +  L  +
Sbjct: 56  IFKCFGCGEAGNVISFVMKTKNLNFVDAVKELADRANIIIPIEDGKQSESQKKKQVLYNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A  ++  +L+N   K    Y   RGI  + ++ F LGYA +   +   HLR++GFS 
Sbjct: 116 NKQAARYYFSNLQNN--KEAKEYFLRRGIKENILKSFGLGYAKEGWQNTINHLRKQGFSN 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E I  AGL I      T YDRFRNR+IFP+   +G VI FGGR L      KYLNSPET+
Sbjct: 174 EAIEAAGLGIKS-EKGTFYDRFRNRVIFPVFDYKGSVIGFGGRVL-DDSKPKYLNSPETL 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG NLY    A+ +                +I+VEGYMD +SL Q G+ NVV+SLGT
Sbjct: 232 VFHKGTNLYALNFAIKH----------GLQERTLIIVEGYMDCISLHQYGITNVVASLGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT+ Q RLL +   R+++ +D D  G  A  + +++       G  V  + + +G+DPD
Sbjct: 282 ALTDNQARLLKRYVDRVIISYDADIAGQMATIRGLEI---LQNAGLDVRVLTVPKGKDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            FIR  GK +F KLI  +  L+D    R      F+  +   +    + N ++ + +   
Sbjct: 339 EFIRANGKESFIKLIQSAKKLIDYKLHRARIGIDFSDNNGLIKYAERVVNILSDL-NPIE 397

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + I +      Q +    +       KN  + + K       +    K  +    
Sbjct: 398 KDVYIKRISEETSIKEQAFYDLLNKNLINSNKNHENVNDK-------EEYGTKLYVEPPY 450

Query: 481 SLREAALLLTLI--NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              E ++L  L    + +++++    L D    +  ++ L   +               +
Sbjct: 451 VKCERSVLKLLCMEENHSLVKKY---LEDDDLISPNIKSLEKII---------------N 492

Query: 539 QRLCERGFGELLKQLDRQVRDAGL---WSATTEANIVD---VRQGYQQALALYKRFRLLS 592
             + E GF  L K ++ +  D  +   W    E  I+D     +   +      R   L 
Sbjct: 493 DSIEEIGFNNLGKHVEAKCEDPKVLKEWLEVKELLILDHSSNIEVLVRDYINLIRKYKLE 552

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +++  + K++ +       +++  L+    E+  ++ ++E  
Sbjct: 553 QEQTTVLKELKRCEQNNMFKESLDLVKRAKEISDKLKELERS 594


>gi|255100480|ref|ZP_05329457.1| DNA primase [Clostridium difficile QCD-63q42]
 gi|255306420|ref|ZP_05350591.1| DNA primase [Clostridium difficile ATCC 43255]
 gi|328887607|emb|CAJ68319.2| DNA primase [Clostridium difficile]
          Length = 596

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 159/636 (25%), Positives = 296/636 (46%), Gaps = 45/636 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN  +D I+++     I+++I +Y++  +   N     Y   CPFH EKTPSF+ N SK 
Sbjct: 1   MNDIKDIIEEIKARCDIASIISEYMNIKQSGAN-----YKGLCPFHGEKTPSFYINTSKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIR 119
            Y CF C   GD ++F+  +    F+++V+ LA   G+ +    + +   K +       
Sbjct: 56  IYKCFGCGEGGDVINFVMKMENLDFMDAVKILANKCGIEINTNMNEETRIKIEKSKKFQD 115

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +   A  F+  +L  +++   + YL  RG+D   I+ F LG++ DS  SL   L  KG+ 
Sbjct: 116 IHTEAARFYLSNLLGSKN-LGYEYLRIRGLDDKIIKKFGLGFSLDSWNSLMNTLISKGYK 174

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ ++E GL+    +    YD+FRNR++FPI   RG +I FGGR L      KYLNSP+T
Sbjct: 175 KQDLLECGLIAKNRDGTNCYDKFRNRVMFPIFDYRGNIIGFGGRVL-DDSLPKYLNSPDT 233

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           ++F+K +NLY    A   L            S  I+LVEGYMD++SL Q G++NVV++LG
Sbjct: 234 LIFNKKQNLYGLNFARKNL-----------ESKTIVLVEGYMDLISLYQYGIKNVVATLG 282

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q  L+ + +   ++ +D D+ G++A  +AID+       G  V  + L   +DP
Sbjct: 283 TALTEQQGILIKRYADTAIISYDSDEAGIKATLRAIDI---LTKLGINVKVLDLKDAKDP 339

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D F+R YG + ++K +  S   +        +  +    +ER +        I  +    
Sbjct: 340 DEFVRKYGLSDYKKAMDVSTHYIKYKIDHLKKEFNIQKDEERVKFAKEASKIIKQLTSPV 399

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
              +Y++ + +++    +    E   YG+ + K   +++QK   +++++   V+      
Sbjct: 400 EIDFYTKYLSNQIDINVESIKREV--YGKNYNKPYNNKNQKKIEEKVIEKVEVRQDGK-- 455

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             L E  L+  ++    I +    ++ +  +   E +++ +++       +      I +
Sbjct: 456 -QLVEETLIKIMLEDKKIREIALLKVEESDFLLKESKEILNYMIK----NQELDKITIDK 510

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                   E LK+L+    ++     T E           + +    R   L  Q   + 
Sbjct: 511 LKSLNISEEYLKELNSISLNSINLENTKEI----------EGIITNIRKNSLEEQINSLL 560

Query: 600 KQIAQVTAKGE----AEKTAILISILHEVHIQIHQI 631
           ++  ++    +      +   +   + E++  +  +
Sbjct: 561 REQQELENNNDMKEVDGRVMEIALKIVEINKILKSL 596


>gi|219670225|ref|YP_002460660.1| DNA primase [Desulfitobacterium hafniense DCB-2]
 gi|219540485|gb|ACL22224.1| DNA primase [Desulfitobacterium hafniense DCB-2]
          Length = 614

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 167/644 (25%), Positives = 292/644 (45%), Gaps = 53/644 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++++ +   I + I +YV   R+  N     Y   CPFH EKTPSF     K  
Sbjct: 4   RIPEEIVEEVRLRSDIVDTISEYVRLQRKGKN-----YLGLCPFHAEKTPSFTVTPDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           +YCF CH  G+  SFL      +F+E+V+ LA   G+ LP     P+ ++++  +     
Sbjct: 59  FYCFGCHTGGNVFSFLMKKENWNFVETVEHLAQKHGIVLPEKELSPREKEQQTRRRRWEE 118

Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + + AT +FH   L     +    Y  +RG+D   I+ F+LGYAPD    L E L  +G 
Sbjct: 119 IHDWATGYFHEVLLHRPEGEPGRQYFQQRGMDEETIKQFRLGYAPDRWDGLLEALSARGV 178

Query: 179 SEEKIIEAGL----LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           S +++ +AGL          S   YDRFR R+IF I  SR + I FGGR L    + KYL
Sbjct: 179 SPQELAQAGLALERDQSEGRSRGFYDRFRKRVIFAILDSRHKTIGFGGRVLDHS-TPKYL 237

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET  F+KG +LY    A   ++             F +L EGYMDV++L +AG +N 
Sbjct: 238 NSPETAFFNKGHHLYGMHRAHQGIR----------EHGFALLAEGYMDVIALQKAGFKNA 287

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGTALT  Q +L+ + + R+V+ +D D  G +A  +A +L       G RV+ + LS
Sbjct: 288 VASLGTALTRDQAKLIHRYTGRVVVVYDSDQAGTQATLRAGEL---LQDMGFRVDILRLS 344

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
             +DPD +++ +G   F K + ++ P +   ++   + +   +  E+AEL   L   I  
Sbjct: 345 GAKDPDEYLKTFGVEEFNKALAQAEPYIQFKYQVHVQTKPTLSAPEKAELVRELAPDIVK 404

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           ++    R  Y + +   L     +   E +G+ R   K A   +     Q +   +    
Sbjct: 405 VQSPVEREGYERFLSLELGLTLDRVQEEIAGFDRKPSKKASGEELFRNKQDISVKNRDNI 464

Query: 475 KLSKKPSLREAALLLTLIN--HPAILQEQYQELADIRYDNNELQKLW-----SFLFSDFV 527
                P+   A++   +I      +     Q +    + +  ++  W       +F    
Sbjct: 465 NRCANPTPSGASVPDGVIRAERVLLRLLLEQLIPVSEFKDQWVEGFWKVAYHQQIFDYIE 524

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           + +          L     G L  ++ + +          +  + + ++ +   +   K+
Sbjct: 525 KARCIGNGA----LSGMESGPLQSKVAQIM--------LEDMELANPQRLFHDCM---KQ 569

Query: 588 FRLLSRQ--KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
              +S +   EE++ ++ ++   G+       +++L E+  ++ 
Sbjct: 570 IHSMSEEETVEELQARMVELEKSGD---LTGALALLKEIGERLR 610


>gi|296451457|ref|ZP_06893194.1| DNA primase [Clostridium difficile NAP08]
 gi|296880194|ref|ZP_06904160.1| DNA primase [Clostridium difficile NAP07]
 gi|296259724|gb|EFH06582.1| DNA primase [Clostridium difficile NAP08]
 gi|296428783|gb|EFH14664.1| DNA primase [Clostridium difficile NAP07]
          Length = 608

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 159/636 (25%), Positives = 295/636 (46%), Gaps = 45/636 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN  +D I+++     I+++I +Y+   +   N     Y   CPFH EKTPSF+ N SK 
Sbjct: 13  MNDIKDIIEEIKARCDIASIISEYMSIKQSGAN-----YKGLCPFHGEKTPSFYINTSKQ 67

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIR 119
            Y CF C   GD ++F+  +    F+++V+ LA   G+ +    + +   K +       
Sbjct: 68  IYKCFGCGEGGDIINFVMKMENLDFMDAVKILANKCGIEINTNMNEETRIKIEKSKKFQD 127

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +   A  F+  +L  +++   + YL  RG+D   I+ F LG++ DS  SL   L  KG+ 
Sbjct: 128 IHTEAARFYLSNLLGSKN-LGYEYLRIRGLDDKIIKKFGLGFSLDSWNSLMNTLISKGYK 186

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ ++E GL+    +    YD+FRNR++FPI   RG +I FGGR L      KYLNSP+T
Sbjct: 187 KQDLLECGLIAKNRDGTNCYDKFRNRVMFPIFDYRGNIIGFGGRVL-DDSLPKYLNSPDT 245

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           ++F+K +NLY    A   L            S  I+LVEGYMD++SL Q G++NVV++LG
Sbjct: 246 LIFNKKQNLYGLNFARKNL-----------ESKTIVLVEGYMDLISLYQYGIKNVVATLG 294

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q  L+ + +   ++ +D D+ G++A  +AID+       G  V  + L   +DP
Sbjct: 295 TALTEQQGLLIKRYADTAIISYDSDEAGIKATLRAIDI---LTKLGINVKVLDLKDAKDP 351

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D F+R YG + ++K +  S   +        +  +    +ER +        I  +    
Sbjct: 352 DEFVRKYGLSDYKKAMDVSTHYIKYKIDHLKKEFNIQKDEERVKFAKEASKIIKQLTSPV 411

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
              +Y++ + +++    +    E   YG+ + K   +++QK   +++++   V+      
Sbjct: 412 EIDFYTKYLSNQIDINVESIKREV--YGKNYNKPYNNKNQKKIEEKVIEKVEVRQDGK-- 467

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             L E  L+  ++    I +    ++ +  +   E +++ +++       +      I +
Sbjct: 468 -QLVEETLIKIMLEDKKIREIALLKVEESDFLLKESKEILNYMIK----NQELDKITIDK 522

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                   E LK+L+    ++     T E           + +    R   L  Q   + 
Sbjct: 523 LKSLNISEEYLKELNSISLNSINLENTKEI----------EGIITNIRKNSLEEQINSLL 572

Query: 600 KQIAQVTAKGE----AEKTAILISILHEVHIQIHQI 631
           ++  ++    +      +   +   + E++  +  +
Sbjct: 573 REQQELENNNDMKEVDGRVMEIALKIVEINKILKSL 608


>gi|254480941|ref|ZP_05094187.1| DNA primase catalytic core, N-terminal domain family [marine gamma
           proteobacterium HTCC2148]
 gi|214038736|gb|EEB79397.1| DNA primase catalytic core, N-terminal domain family [marine gamma
           proteobacterium HTCC2148]
          Length = 652

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 169/672 (25%), Positives = 288/672 (42%), Gaps = 65/672 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI DLL  + I +++ + V   +   N     Y A CPFH+EKTPSF  +  K F
Sbjct: 4   RIPQTFIDDLLDRVDIVDVVDRRVKLRKTGKN-----YSARCPFHEEKTPSFSVSPDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDL 117
           YYCF C   G+ L F+       F ++++ LA   G+ +        P   K+E+    L
Sbjct: 59  YYCFGCGAGGNALGFVMDYENIEFPQAIETLANSVGMEVQREANSGGPAQAKREETNKSL 118

Query: 118 IRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             L+E   +F+   L+ +        YL ERG+     + F +G+AP    +L   L + 
Sbjct: 119 YTLMEQVANFYKQQLRQHPERSNAVKYLKERGLTGQIAKQFGMGFAPPGWDNLLTALGET 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              +  +++AG+L++ D     YDRFR+R++FPIR  RG+VIAFGGR L   +  KYLNS
Sbjct: 179 EDKKALLMKAGMLVENDKG-RIYDRFRDRVVFPIRDQRGRVIAFGGRVL-GDDKPKYLNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F KG+ LY F+ AL   +K  R          +++VEGYMDV++L Q G+    +
Sbjct: 237 PETDIFQKGRELYGFYEALQANRKLER----------LLVVEGYMDVIALAQHGITIATA 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA +   L  +++  P ++ CFDGD+ G +AA++A++  L  +  G +  F+ L  G
Sbjct: 287 TLGTATSNAHLERIYRRCPEVIFCFDGDEAGRKAAFRALEAALPCMEDGRQARFLFLPEG 346

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD+ +R  G   FE+L+  + PL   L+    E       D RA L       I  + 
Sbjct: 347 EDPDTVVRSGGAEKFEELLAGATPLDTFLFDSMAEGLDTGNLDGRARLSKLALPHIRLMP 406

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL---------- 466
           +   +    QA+ +R     +  +       +     +       P              
Sbjct: 407 EGVFKQLMFQALAERTGLELESLMRLEVPPPQPSAPASYSGRSSDPGYHPGRDQSGGAEQ 466

Query: 467 --------------------------MQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                                      +      +     S    + +  +++ P I ++
Sbjct: 467 HRYQDGAPSLGDEQYPELDVDDDEAGPRQRAPNSQQQAGYSNLAQSAIALILHQPEIARQ 526

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
                  +   + +   L + L      +       +         GELL QL  Q R  
Sbjct: 527 VKA--GGLTELSGDNVALLAELIDLVQRRPESNTGMLLGHWYGTPEGELLNQLAGQER-- 582

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            + +A  E    D+       L    +   L++Q ++++       ++ E ++   L+  
Sbjct: 583 LIPTAGIERQFNDIIYNLAHHL---PQQSKLAQQVDKLKLTNYAEVSELEKQRLRELLQE 639

Query: 621 LHEVHIQIHQIE 632
             +   + ++ +
Sbjct: 640 KLQRDAERNRRD 651


>gi|89891782|ref|ZP_01203284.1| DNA primase [Flavobacteria bacterium BBFL7]
 gi|89515937|gb|EAS18602.1| DNA  primase [Flavobacteria bacterium BBFL7]
          Length = 653

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 152/669 (22%), Positives = 281/669 (42%), Gaps = 64/669 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  + ++     +  +IG +V   +  +N     +    PF DE++PSF  +  K  +
Sbjct: 2   ISRTTVDNVFETARVEEVIGDFVQLKKSGSN-----FKGLSPFSDERSPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
             FS    G+ ++FL      +F E+++ LA   G+ +       E+K  +  +  +  +
Sbjct: 57  KDFSSGKGGNAVTFLMEHEHFTFPEAIKWLANKYGIEIIETQQTDEEKQTQDQKESMFLV 116

Query: 121 IEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            + A+++    LK    K + + Y  ER      I+ F+LGY+PD   +  +   + G+ 
Sbjct: 117 SKFASEWMESQLKTEMGKAIGYSYFKEREFTDETIKHFQLGYSPDQWSAFTDAAIKSGYQ 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
            E + + GL I        +DRF+ R++FPIRS  G+V+ FGGR L+  +   KYLNSP+
Sbjct: 177 LEFLEKTGLTIV--KGEKQFDRFKGRVMFPIRSLSGRVLGFGGRILTNDKKAAKYLNSPQ 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + ++ K K LY  + A   + K               LVEGY DV+ L QAGV+NVVSS 
Sbjct: 235 SDIYDKSKVLYGIYEAKQSIAK----------EDLCYLVEGYTDVIQLHQAGVKNVVSSS 284

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT+ Q+RL+ +L+  I + +DGD  G+RAA + IDL    L  G  V       GED
Sbjct: 285 GTALTKEQIRLIQRLTKNITVLYDGDAAGMRAAIRGIDL---ILEAGMNVRICTFPEGED 341

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDSF + + ++  E+ +  +            ++ +   P ++AE+   +   I  + D 
Sbjct: 342 PDSFAKAHTQSEIEEFLTANAVDFISFKSNLLKDEAAGDPIKKAEMIRDIVQSIAKVPDD 401

Query: 419 KLRYYYSQAIRDRLQQ----LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
             R  Y +     L      LF       +   +  +K  R   Q  P +++  +     
Sbjct: 402 ISREIYVRESAAILDIGEDVLFSSLAQNRNAGIKEQRKKDRRDQQSQPLKKVESAEAAVK 461

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQEL----------------------------- 505
               + S+ E A++  L+ +   +++  +E                              
Sbjct: 462 --VDRRSVLEHAIIKILLLYGDKVEDFQEEFLQESEDGELVVEPVKVTMPVYEKVYLDLQ 519

Query: 506 -ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAG 561
             +I + N   + L+  +    + Q       +   L E       +L+ Q D+      
Sbjct: 520 NDEIEFSNAIFKTLYPKIVDLLLMQGKVNLNHVMSTLNEHEAMLVADLVMQEDKYQLHKW 579

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                   +  +    Y     L  R  ++  + + + + I++  +    +     +   
Sbjct: 580 DGKMIFVKSKDETISTYTMDAILNFRRLMIEEKIKALFESISKDPSVDNTD-VLSTVRDY 638

Query: 622 HEVHIQIHQ 630
           ++++  + +
Sbjct: 639 NKLNRYLGR 647


>gi|257869537|ref|ZP_05649190.1| DNA primase [Enterococcus gallinarum EG2]
 gi|257803701|gb|EEV32523.1| DNA primase [Enterococcus gallinarum EG2]
          Length = 609

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 151/641 (23%), Positives = 274/641 (42%), Gaps = 44/641 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+  I D+     I +++GQYV   +   N     Y+  CPFH+EK+PSF   + K  
Sbjct: 3   RIPQTVIDDIRERSNIVDIVGQYVQLKKSGKN-----YFGLCPFHNEKSPSFSVAEDKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLI 118
           Y+CF C   G+   FL  L G SF ESV ++A I+ +PL     + E  +     Q  LI
Sbjct: 58  YHCFGCGRGGNVFGFLQELEGLSFPESVLKVAEISDIPLDEQYKQTEAIDATSSQQNQLI 117

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A + +HH L   A  +    YL ERG+    I+ F++G+AP+ R  L +    + 
Sbjct: 118 ALHEKAAEVYHHMLVNTAAGQGALDYLLERGLTMALIDEFQIGFAPNERAFLEKVFLNEK 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESVK 232
            +     + GL +  ++     DRF  R++FPIR+ +G+ I F GR          +  K
Sbjct: 178 ANAAFFADTGLFVQRNDG-QLADRFYQRIMFPIRNPQGKTIGFSGRWFQTEQDDSKDQPK 236

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPET+LF+K + L+NF  A   ++K             + L EG+MDV++  Q+G++
Sbjct: 237 YLNSPETMLFNKREVLFNFDKARRSIRK----------EGQVFLFEGFMDVIAAWQSGIE 286

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           N ++S+GT+LT  Q+  + +++  ++LC+DGD  G+ A  + IDL+  H      V  V 
Sbjct: 287 NGIASMGTSLTNQQIANIERVATEVILCYDGDQAGINATNRGIDLLQEHSRVNLSV--VR 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +    DPD ++R YG  AF KL +     +          NR+     E+ +    +   
Sbjct: 345 VPERLDPDDYVRKYGTEAFFKLAMHGRETVFAFKMDFHRANRNLANEKEQIDYVQEVLQE 404

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           + H+     +  Y   +        +   T+     +           +      +    
Sbjct: 405 LQHVDSLLEQDRYLTQLSTEFHISRETLQTQLRQLKQTQPTPTPSPPVREAVS--VAPPP 462

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            + +   +    E  LL  L +   +          + + +++ Q+++    +    ++ 
Sbjct: 463 PRQQRKTQVEKAEELLLYRLFHDNTLNPRFKS--TGVAFIHDKYQQIYFLYDAYMETEEQ 520

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
           F+  +    L +    + + ++                   +  +   Q L    R   +
Sbjct: 521 FILAKFLDFLKDEQMKQQVIEIADI------------KASEEGTEQEFQDLLQVFRKSGI 568

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           + +  +   Q  +   KG  +    L   + ++  ++ Q +
Sbjct: 569 AEEINQKRIQQQEARQKGNQQLELELAIAIIDLTKRLKQAK 609


>gi|89895794|ref|YP_519281.1| hypothetical protein DSY3048 [Desulfitobacterium hafniense Y51]
 gi|89335242|dbj|BAE84837.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 614

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 167/644 (25%), Positives = 292/644 (45%), Gaps = 53/644 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++++ +   I + I +YV   R+  N     Y   CPFH EKTPSF     K  
Sbjct: 4   RIPEEIVEEVRLRSDIVDTISEYVRLQRKGKN-----YLGLCPFHAEKTPSFTVTPDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           +YCF CH  G+  SFL      +F+E+V+ LA   G+ LP     P+ ++++  +     
Sbjct: 59  FYCFGCHTGGNVFSFLMKKENWNFVETVEHLAQKHGIVLPEKELSPREKEQQTRRRRWEE 118

Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + + AT +FH   L     +    Y  +RG+D   I+ F+LGYAPD    L E L  +G 
Sbjct: 119 IHDWATGYFHEVLLHRPEGEPGRQYFQQRGMDEETIKQFRLGYAPDRWDGLLEALSARGV 178

Query: 179 SEEKIIEAGL----LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           S +++ +AGL          S   YDRFR R+IF I  SR + I FGGR L    + KYL
Sbjct: 179 SPQELAQAGLALERDQSEGRSRGFYDRFRKRVIFAILDSRHKTIGFGGRVLDHS-TPKYL 237

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET  F+KG +LY    A   ++             F +L EGYMDV++L +AG +N 
Sbjct: 238 NSPETAFFNKGHHLYGMHRAHQGIR----------EHGFALLAEGYMDVIALQKAGFKNA 287

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGTALT  Q +L+ + + R+V+ +D D  G +A  +A +L       G RV+ + LS
Sbjct: 288 VASLGTALTRDQAKLIHRYTGRVVVVYDSDQAGTQATLRAGEL---LQDMGFRVDILRLS 344

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
             +DPD +++ +G   F K + ++ P +   ++   + +   +  E+AEL   L   I  
Sbjct: 345 GAKDPDEYLKTFGVEEFNKALAQAEPYIQFKYQVHVQTKPTLSAPEKAELVRELAPDIVK 404

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           ++    R  Y + +   L     +   E +G+ R   K A   +     Q +   +    
Sbjct: 405 VQSPVEREGYERFLSLELGLTLDRVQEEIAGFDRKPSKKASGEELFRSKQDISVKNRDNI 464

Query: 475 KLSKKPSLREAALLLTLIN--HPAILQEQYQELADIRYDNNELQKLW-----SFLFSDFV 527
                P+   A++   +I      +     Q +    + +  ++  W       +F    
Sbjct: 465 NRCANPTPSGASVPDGVIRAERVLLRLLLEQLIPVSEFKDQWVEGFWKVAYHQQIFDYIE 524

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           + +          L     G L  ++ + +          +  + + ++ +   +   K+
Sbjct: 525 KARCIGNGA----LSGMESGPLQSKVAQIM--------LEDMELANPQRLFHDCM---KQ 569

Query: 588 FRLLSRQ--KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
              +S +   EE++ ++ ++   G+       +++L E+  ++ 
Sbjct: 570 IHSMSEEETVEELQARMVELEKSGD---LTGALALLKEIGERLR 610


>gi|146319083|ref|YP_001198795.1| DNA primase [Streptococcus suis 05ZYH33]
 gi|145689889|gb|ABP90395.1| DNA primase (type) [Streptococcus suis 05ZYH33]
          Length = 596

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 144/636 (22%), Positives = 259/636 (40%), Gaps = 50/636 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I ++   + I ++IG+ V   +   N     Y   CPFH EKTPSF+  + K FY
Sbjct: 2   LSKDKITEIKQALNIVDVIGETVALTKAGRN-----YVGLCPFHGEKTPSFNVIEDKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
           +CF C   GD   F+  + G SF ++   LA  AG  + V     + EK+      L  +
Sbjct: 57  HCFGCGKSGDVFKFVEEVRGVSFADAAAILAEKAGFQIDVTPSYHQEEKRVSPHQVLYDI 116

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    I+ F+LG AP  +  L + L  +   
Sbjct: 117 HRDAAKFYHALLMTTKMGEEARAYLHQRGLTDDVIKTFQLGLAPAEQNILYQKLSGQYDE 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-----KYL 234
           E  +           +   YD F+ R+IFP+    G+++AF GR  ++         KY 
Sbjct: 177 ESLLNSGLFN--PSENNIIYDAFQARIIFPLADEYGRIVAFSGRIWTEENRNNKQLAKYK 234

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS  T +F+K   LY+   A   ++K               L+EG++DV++  + G+ N 
Sbjct: 235 NSRSTAIFNKSYELYHLDKAKAVIKKQ----------RETYLMEGFLDVIAAHRVGIDNA 284

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +  L K   +IVL +DGD  G  A  KA+D +    +       V L 
Sbjct: 285 VASMGTALTREHVAHLAKFCKKIVLTYDGDKAGQAATMKALDELQDFQVE-----IVSLP 339

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD F++   + A ++++ +S         +  +  + +    + E    +   I  
Sbjct: 340 DNMDPDEFLQKNSEEALQQVLTKSRISDVEFLIQYLKPENPDNLQMQIECVDKIAPIIAK 399

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVK 473
           +     +  Y   + D L       + +     R  ++  R +   +  + +     +  
Sbjct: 400 VSSITAQNSYIYKVADLLSDFDYNQVEQAVNAVRLNQRQERTQQVFQSQTGQSYLPPVQT 459

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                     E  LL  ++ HP IL E ++   D  +   ELQ ++  +     E   F 
Sbjct: 460 IARITSLIRTENHLLYRMVEHPYILNE-FRLREDFYFATPELQAIYD-MLKKSGEITSFE 517

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             +++    +  +    ++L                   +V     + L + +   LL +
Sbjct: 518 LSQLNDSAQQAWYRMQEERL-----------------PDEVSPHEIEELEIRRDKELLKK 560

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + + + ++I + +  G A+     +  L +   Q+ 
Sbjct: 561 ENQHLARKIREHSHVGNADIALDELQKLLDRRRQME 596


>gi|51244644|ref|YP_064528.1| DNA primase (DnaG) [Desulfotalea psychrophila LSv54]
 gi|50875681|emb|CAG35521.1| related to DNA primase (DnaG) [Desulfotalea psychrophila LSv54]
          Length = 617

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 153/643 (23%), Positives = 264/643 (41%), Gaps = 35/643 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    D +  +     I  +IG+ V+  R  +      Y   CPFH EKTPSF     + 
Sbjct: 1   MKQGEDVVALIKERADIVQIIGETVELRRSGS-----RYVGLCPFHGEKTPSFSVTAGEQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLI 118
           F++CF C   GD LS++      SF E+++ LA   GV LP      ++K   + +  + 
Sbjct: 56  FFHCFGCGESGDVLSYVMKYYALSFPEALKMLAERYGVVLPERKQSAQEKALAEKRKKMF 115

Query: 119 RLIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E     +   L+  R       YL  RG+       + L YAP         L    
Sbjct: 116 ALNEKVAAIYGQYLRTNRGAGAARDYLVRRGVGKKISADYGLCYAPSQDVEGWHFLGGHL 175

Query: 178 FSEEKIIEAGLL-IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
             EE ++ A L  +    +   YDRFR+R++FPIR   GQ+  FGGR + +G+  KY+NS
Sbjct: 176 AKEELVLAAELGLVSAKENGGYYDRFRDRILFPIRDIAGQICGFGGRIIGEGQP-KYMNS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+++F+K   L   +     +++          +  ++ VEG  D++SL  AGV+NVV+
Sbjct: 235 PESLIFNKSSLLLGLYQQKEDIRR----------AGSVVFVEGNFDLISLVGAGVKNVVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            LGTALT   LRL+ + +   V+ FDGD  G++AA +++ L L   + G      LL  G
Sbjct: 285 PLGTALTREHLRLVKRFAEGAVMLFDGDKAGVQAAVRSVPLFLGENLMGKVS---LLPEG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPD+++R +G     +L+ E+ PL +  ++   +     + D ++ +   LK  +    
Sbjct: 342 EDPDTYVRRHGGRGILELLAEASPLPEFAFENLVQ-EHGLSLDGKSRVIEGLKPLVQAAT 400

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               R        ++L                   +             L Q    K + 
Sbjct: 401 SSLQRSVILSHFAEKLGLDVISLERNLQTGEGGPAQKNVLPSSVPVITPLKQK---KTEA 457

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  +   +  ++ HP++               +  + ++  + S   + +   PEE
Sbjct: 458 VLPLDSVQRRFVQFMVLHPSLFDRLVAMGMRNILLGSVGEIIFLHMTSLLRKHRVLEPEE 517

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
               L +    +++ ++        L          D   G    L  Y    LL ++  
Sbjct: 518 FLGLLPKGVERKVVAEI--------LLKQGDGLAEGDDPLGELAELEAYLEVALLKKKSN 569

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +I   I  +    E +K   L+     V +++  +     ++E
Sbjct: 570 DILLSIQGLDQVNELDKLQDLLLEKMAVELELQGVLENFQLLE 612


>gi|259046799|ref|ZP_05737200.1| DNA primase [Granulicatella adiacens ATCC 49175]
 gi|259036567|gb|EEW37822.1| DNA primase [Granulicatella adiacens ATCC 49175]
          Length = 621

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 152/636 (23%), Positives = 280/636 (44%), Gaps = 40/636 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ ++ +   + I +++GQ+V   ++         +  CPFHDE+TPSF   + K  
Sbjct: 4   RISKETVQSIQSQVNILDIVGQFVQLRKQGK-----SLFGRCPFHDERTPSFTVTEEKQL 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRL 120
           ++CFSC   G+  +F+  L   SF ESV R+A ++ + + V  P  +    + +  L   
Sbjct: 59  FHCFSCGRGGNVFNFMQELENLSFPESVVRVAELSNIDIDVELPTTQTIIPRKEKKLYEA 118

Query: 121 IEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E A +F+ H  L     K    YL+ RG     ++ F  G++   R  L + L++   +
Sbjct: 119 HEKAAEFYSHVLLNTKGGKEALDYLENRGYTVETLKEFGFGFSLKDRTQLEQVLQELQLT 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-----KGESVKYL 234
           +E+   +GL  +       +DRF  R++ P+R+  GQ+IAF GR L           KYL
Sbjct: 179 DEEKEASGLFSE--KQNGFFDRFNQRIMIPLRNEHGQIIAFSGRVLPGYSDDFASQAKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPETILF K   L+NF  A   ++K  +          +IL EGYMDV+S  QAGVQ  
Sbjct: 237 NSPETILFSKRNFLFNFDLAKKNIRKQNK----------VILFEGYMDVISAWQAGVQIG 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GT+LT  Q++ L K++  I++ +DGD  GL A  +AI+++        ++  +   
Sbjct: 287 VASMGTSLTPDQIQTLQKVTDTILIAYDGDKAGLEATNRAIEMIQDTNT--FKIGIIPFD 344

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKNCIN 413
            G DPD FI+  G  AF+ L+  S   V    KR    +     + +  +    +   ++
Sbjct: 345 NGLDPDEFIKERGTQAFKDLVEYSQETVYQFKKRFLSKKYSLQIESQKIQYIEEMIVELS 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            I ++       +++ D     F   + +         K  R  + +  S        V+
Sbjct: 405 KINNEVELNLAMKSLADEFDLDFSTVLNQVKQLRLRLGKQKRQSNAESVSYN----RQVE 460

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + K    +  L+  L+++        +  ++  + ++  ++L+  L S   E+    
Sbjct: 461 IKPATKNEHIQKQLMYRLLHNEQAWTYLNRIDSEFVFPDSHYEQLYLLLQSFKNEENEVD 520

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            ++    L ++            V +  L +   E    +     Q  + +  +   L  
Sbjct: 521 VQQFFLFLDDKDVLN-----RNLVSEIELSNFPPECTEQE----IQDLVYVLSKKNSLKE 571

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           Q    ++++ +     +      L+  + E+  Q+ 
Sbjct: 572 QLASKKEELNRAALMKDDILRQQLMREIMEIQRQLR 607


>gi|255003047|ref|ZP_05278011.1| DNA primase (dnaG) [Anaplasma marginale str. Puerto Rico]
          Length = 585

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 177/619 (28%), Positives = 284/619 (45%), Gaps = 51/619 (8%)

Query: 23  QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLG 82
           + +   +R +N     Y   CPFH EKTPSFH N S   +YCF C V GD + F+S + G
Sbjct: 5   RKIKLIKRGSNH----YVGLCPFHSEKTPSFHVNCSNDMFYCFGCGVHGDVVQFVSDIDG 60

Query: 83  CSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHY 142
            SF E+++ LA + GV LP    + E        L  L++ A  +F   L  ++      
Sbjct: 61  LSFREAIEYLAQVYGVSLPAKAGRGEADF-----LYELMDYAARWFVEQL--SKSPTALS 113

Query: 143 YLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRF 202
           YL  RGID   I  F+LGY P S   ++        S EK+ +AGLL          D  
Sbjct: 114 YLRSRGIDEKTIRKFRLGYVPVS--GIKTCFASSQISFEKVRDAGLLTK-----NFQDCL 166

Query: 203 RNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSI 262
            NRL+FPI S+ G+VIAFGGR++S   S KYLNS E  LF K ++LY    AL   +K  
Sbjct: 167 YNRLVFPICSATGRVIAFGGRSVSDKHSPKYLNSAENALFKKRESLYGLHLALAAAKKLG 226

Query: 263 RKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD 322
           R          II VEGYMDVL L Q G+ NVV  LGTA+TE  LR +W + P +V+  D
Sbjct: 227 R----------IIAVEGYMDVLILSQLGISNVVGLLGTAMTEAHLRHMWDIVPEVVVWMD 276

Query: 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382
           GD  G+ A+ K   L L  +  G+ + FV   +G+DP       G    + L+  +  L 
Sbjct: 277 GDGAGMNASMKIAHLALSIIKSGHSIRFVTSPQGKDPYDVCVNLGPDTAKGLVEHAKLLS 336

Query: 383 DMLWKRETENRSFNT-----PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           + +W  E    +  +     P++   LE  ++   + I+D  +  YY      +++ L +
Sbjct: 337 EFVWDYELARANIASSGKVVPEQCMALEQRIREYTSEIRDVHIAKYYKSFFYQQIKALQR 396

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
           +        GR     +    ++G     +    ++    +   +R   ++ T++  P +
Sbjct: 397 EQ-----YNGRGVPHGSARAIEQGLRSSRLGGVSLQACAGENYQMR---VIYTIVECPRL 448

Query: 498 LQE--QYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCE--RGFGELLKQ 552
           L +   +++ A + + + +++ L   +              ++   LC     F   L+ 
Sbjct: 449 LYDVTVFEQFASLDFAD-DMRPLQQHIVDIREAHGGELSKADLIGELCSRRADFEPALRS 507

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           +  ++   G    T   +  DV +  ++         +LSRQ  EI++QI ++  +G  +
Sbjct: 508 IQEKMSAIGCAFGTKGCSDADVEKRARREWEKL----MLSRQLSEIQEQIVKLRLEGRYD 563

Query: 613 KTAILISILHEVHIQIHQI 631
               L     EV  ++  +
Sbjct: 564 IALNLSEHAKEVDDRLRSL 582


>gi|328957490|ref|YP_004374876.1| DNA primase [Carnobacterium sp. 17-4]
 gi|328673814|gb|AEB29860.1| DNA primase [Carnobacterium sp. 17-4]
          Length = 617

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 149/644 (23%), Positives = 283/644 (43%), Gaps = 47/644 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + +  +     I +++ QYV   ++  N      +  CPFH+E+TPSF   + K  +
Sbjct: 2   IPEETVNKVRQETNIVDVVSQYVQLKKKGKNL-----FGFCPFHEERTPSFSVAEEKQIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTDL 117
           +CFSC   G+  +FL  + G +F E+V + A ++   L        D K +  +  +  L
Sbjct: 57  HCFSCGRGGNVFTFLMEVDGLTFPEAVVKTAELSQFELDESLVQDLDHKNQPNDSAKEKL 116

Query: 118 IRLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           IR+ E + + FHH  L     +    YL +RG+    I+ F +G+AP  R  LR++L  K
Sbjct: 117 IRVHEESAELFHHILLNTTIGEEALEYLTQRGLTREVIDTFNIGFAPRERTMLRQYLVGK 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES---VKY 233
            + +E + + GL ++ D+     DRF NR+IFPIR+ +G+ +AF GR   +       KY
Sbjct: 177 NYEQELLKKTGLFVEKDSG-ELLDRFYNRIIFPIRNQQGKTVAFSGRIFQQDADDSAPKY 235

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET LF+K   L+NF  A + +++             +IL EG+MDV+   +AG+ N
Sbjct: 236 LNSPETQLFNKRTILFNFDLARSSIRR----------EKEVILFEGFMDVIGAWKAGITN 285

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            ++S+GT+LT  Q+ L+ + +  +V+ +DGD  G+ A  +A DL+         +  +  
Sbjct: 286 GIASMGTSLTNEQIHLIDRTTDHVVIAYDGDSAGVEATKRASDLLAAETNFDIDI--IRF 343

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           + G DPD +I+  G  AF++LI                ++ + +   +R      + + +
Sbjct: 344 AEGMDPDEYIKKNGADAFKELIAHGRETHFGFKMSYYRKSLNLSNESQRLGYIEKILSEL 403

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG-----YGRYWKKNARHRDQKGPSQRLM 467
             +     R  Y + +    +        +          +  K+  +   Q  P++   
Sbjct: 404 LSVTSAVERELYFKQLATEFELSIDSLKEQFQQKFHESRNKRTKEKQQQSQQNHPAEANY 463

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
                + +        E  LL  L +             D  + ++E Q ++  L+  F 
Sbjct: 464 PQVQTQKRKPTNIEHAERLLLNRLFHFEEAWIILRNAADDFHFVHDEYQMVF-ILYESFR 522

Query: 528 EQ--KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
           E      + +     + E     L+ +++     + + +           +  +  L + 
Sbjct: 523 EHTANEGMIDAFIDFVKEPELKNLIVEIELLSISSEVST-----------REIEDYLDVI 571

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            R   L  Q +E +  + + + +G+ E+  +L+  +  +   + 
Sbjct: 572 SRKSGLQLQLKEKQDALKEASRRGDKEQLRVLMIEVVNLSRLLK 615


>gi|163752997|ref|ZP_02160121.1| DNA primase [Kordia algicida OT-1]
 gi|161326729|gb|EDP98054.1| DNA primase [Kordia algicida OT-1]
          Length = 653

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 145/666 (21%), Positives = 258/666 (38%), Gaps = 58/666 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +     +  +IG +V   +  +N     +    PF DE+TPSF  +  K  +
Sbjct: 2   IAKSTIDAVFDISRVEEVIGDFVQLKKSGSN-----FKGLSPFSDERTPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA   G+ +   +   E+K     +  +  +
Sbjct: 57  KDFSSGKGGNVVAFLMEHEHFTYPEAIRYLANKYGIEIEETERTDEEKALANEKESMYLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +    L  A   +     Y  ERG     I+ F LGYA D   +  +   ++G+
Sbjct: 117 SEYAKKYHQEVLWEAPQGKAIGLTYFKERGFTQETIKKFGLGYALDEWSAFTDTALKEGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           +   + + GL I        +DRF+ R++FPI S  G+V+ FGGR L+  +   KYLNSP
Sbjct: 177 NLTYLEKTGLTIV--KGEKRFDRFKGRVMFPIHSMSGRVLGFGGRILTNDKKAAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  + A   + K               LVEGY DV+ + QAG+ NVVSS
Sbjct: 235 ESDIYHKSKVLYGLYYAKQAIAK----------EDNCYLVEGYTDVIQMHQAGIHNVVSS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ +L+  I + +DGD  G+RA+ + +DL    L  G  V       GE
Sbjct: 285 SGTALTAEQIRLINRLTKNITVLYDGDAAGIRASLRGVDL---ILEQGMNVRVCTFPDGE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF +             ++              + N P ++AE+   + + I+ + D
Sbjct: 342 DPDSFTKNNALEDVLAYFENNVKDFISYKASLLMEVAKNDPIKKAEVINDMMSSISKVSD 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  +  Y +     +    +      +       K+A  + ++      +     K K  
Sbjct: 402 RIKQELYLRETSRIMDISEEVLFATLAQLQNKEIKDANKKIKQEKKAFEVIKPKEKAKSV 461

Query: 478 KKPSLREAALLLTLINHPAILQEQYQEL------------------------------AD 507
               + E  L+  L+ +  +       +                               +
Sbjct: 462 DVQYILERKLIEILLLYGNMEATFEDLILKEDDDGELKMERELFEAKVFQKLYLDLQQDE 521

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
           I   N + QK++               +     +      E+   L R+ R         
Sbjct: 522 IDLANEKFQKIYYKAIEKLNATGSLELDTFVNEIEPEVANEVTDILMREERYELHNWEAQ 581

Query: 568 EA---NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
                   +          L  R  L++ + EE++  +++ T   + +     I     +
Sbjct: 582 NIFVKPKEETIAQLTSETILSLRCFLINLKIEELKLSLSEDTKLEDLQSILEEIKDYIFL 641

Query: 625 HIQIHQ 630
              + +
Sbjct: 642 KKSLSE 647


>gi|261880079|ref|ZP_06006506.1| DNA primase [Prevotella bergensis DSM 17361]
 gi|270333233|gb|EFA44019.1| DNA primase [Prevotella bergensis DSM 17361]
          Length = 659

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 142/679 (20%), Positives = 267/679 (39%), Gaps = 64/679 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  ++ +     I  ++ ++V   +   N     Y   CPFH+EKTPSF+ + ++G  
Sbjct: 2   IDRQTVEKIKDTANIVEVVSEFVTLRKSGAN-----YKGLCPFHNEKTPSFYVSPARGIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
           +CF C   G  ++F+      ++ E+++ LA    + +   +   E+K  +  +  +  +
Sbjct: 57  HCFGCGKGGTPVNFVMEHEQMTYPEALRWLAQKYHIEIKERELTDEEKAEQSQRESMFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A ++F   L N  D +     Y   RG     I  F+LGY    R +L      +G+
Sbjct: 117 NDWACNYFEDLLHNHADGKAIGMQYFHSRGFRDDVIRKFRLGYDLSDRSALARAALNQGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
            EE ++  G+    D      DR+  R++FP     G+V+ F  R L    KG + KY+N
Sbjct: 177 KEEFLLSTGICFKTDRG-ELLDRYAGRVVFPWIGISGKVVGFTARVLDSRTKGVNQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP + ++HK + LY  + A   + K  R          + +VEG  DV+++ Q G++NVV
Sbjct: 236 SPASDIYHKDRELYGIWQAKKSIAKEDR----------VFMVEGQADVIAMHQCGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ +Q+  L + +  I L +D D  G+ AA K  D+    L  G  +  +LL  
Sbjct: 286 ANSGTALSFHQIHTLHRFTSNITLIYDNDPAGIHAAIKGTDM---LLAEGMNLKVLLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPD F R +    F + I +      + +K +   +    P +RA+    +   I+ +
Sbjct: 343 GKDPDEFARSHTAAEFREYIEQHQSDF-IQFKTDLLLKGETDPTKRADAINSIVESISMV 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL------MQS 469
           +DQ LR  Y      R+    +  I + + + R  +K+          Q           
Sbjct: 402 QDQILRNTYIHDCAQRIDINERTLINQMNAFIRRRRKSNSSATPTMREQGADSAAGQTAP 461

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL-------------------ADIRY 510
            +      ++    E  L   ++ +        ++                      + +
Sbjct: 462 PIHTVTPMQQAGKVERMLAQMVVRYGERFIRNIKDEDGNVYDLTIAQYIRCNLESDQLEF 521

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT--- 567
            +    K+         +   F  E       +    +   Q+        L        
Sbjct: 522 KHQVFNKILEEAVQ-MSDNPEFRAEPYFIHHDDIQISQEATQMAADHYHFSLSKEEEILN 580

Query: 568 -------EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA-EKTAILIS 619
                  E N ++  +     L L  R   +    +E+  QI Q +   E  +K      
Sbjct: 581 EEDRRENEENEMERLKQQVDHLLLDFRMDYVELHLKELMNQIKQASDDMEQLKKLMEEYR 640

Query: 620 ILHEVHIQIHQIESQEAMI 638
            + E+  ++ ++     +I
Sbjct: 641 EMQEIRNKLAKMLGSNIII 659


>gi|22537573|ref|NP_688424.1| DNA primase [Streptococcus agalactiae 2603V/R]
 gi|25011539|ref|NP_735934.1| DNA primase [Streptococcus agalactiae NEM316]
 gi|22534456|gb|AAN00297.1|AE014257_4 DNA primase [Streptococcus agalactiae 2603V/R]
 gi|24413078|emb|CAD47156.1| DNA primase [Streptococcus agalactiae NEM316]
          Length = 602

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 153/634 (24%), Positives = 273/634 (43%), Gaps = 48/634 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKEKISEIKNSVNIVDVIGEVVGLTKTGRN-----HLGLCPFHKEKTPSFNVIEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRL 120
           ++CF C   GD   F+      SF++SVQ LA  +G+PL      ++ KK K    L+ +
Sbjct: 66  FHCFGCGRSGDVFKFVEDYQHISFLDSVQVLAERSGIPLDTNFKGQVPKKPKANQSLLDI 125

Query: 121 IEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             VA+ F+H  L      +R   YL ERG+    I+ F++G +P  +  L   L  K F 
Sbjct: 126 HRVASGFYHAYLMTTNDGERARQYLAERGVTEDLIKHFQIGLSPGGQDFLYRRLA-KEFD 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYLN 235
           E+ ++ +GL    +NS   YD F NR++FP+ +  G+VIAF GR  ++ +      KY N
Sbjct: 185 EKTLMSSGLFNYSENSNQFYDSFNNRIMFPLTNDIGEVIAFSGRVWTQEDIDRKQAKYKN 244

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   + K          +  + L+EG+MDV++  +AG++NVV
Sbjct: 245 SRATPIFNKSYELYHLDKARAVINK----------AHEVYLMEGFMDVIAAYRAGIENVV 294

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   +R L + + ++VL +DGD  G  A  K+++L+         V+ V +  
Sbjct: 295 ASMGTALTNEHVRHLKRFTKKVVLTYDGDRAGQNAIDKSLELL-----SDMTVDIVRIPN 349

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F++      F++L+          +    +  + +           +   I   
Sbjct: 350 KMDPDEFLQANSAEDFKQLLENGRISNTEFYIHYLKPENTDNLQSEIAYVEKIAKLIAKS 409

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                +  Y   + + L       + +     R   ++ +       +   +Q  L +  
Sbjct: 410 PSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHHRSQQQASSSVQTSATVQ--LPQTG 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                +  E  L   L+NHP +L E      +  +D  E+Q L+  L             
Sbjct: 468 KLSAITKTEMQLFHRLLNHPYLLNEFRNR-DNFYFDTTEIQVLYELLKESGE-------- 518

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                +      +   +++R            E +I ++ +  ++A     + R L +Q 
Sbjct: 519 -----ITSYDLSQESDKVNRTYYIILEEQLPVEVSIGEI-EAVEKARDRLLKERDLRKQ- 571

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
               + I Q + +G+ E     +  L      + 
Sbjct: 572 ---SQLIRQSSNQGDEEGALAALENLIAQKRNME 602


>gi|78486148|ref|YP_392073.1| DNA primase [Thiomicrospira crunogena XCL-2]
 gi|78364434|gb|ABB42399.1| DNA primase [Thiomicrospira crunogena XCL-2]
          Length = 576

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 181/605 (29%), Positives = 293/605 (48%), Gaps = 44/605 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI+DLL    I  +I Q V   +  TN     Y ACCPFHDEKTPSF+ +  K FY
Sbjct: 9   IPRSFIEDLLARADIVQVINQRVPLKKAGTN-----YKACCPFHDEKTPSFNVSAQKQFY 63

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   GD L FL+   G SF+E+V+ LAA+ G+ +P      K  ++++   DL  +
Sbjct: 64  HCFGCGASGDALKFLTDYDGLSFVEAVETLAAMNGMEVPREKLTQKQAQQQQKTRDLYDV 123

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +     F+   LKN    +    YL +RG+ S   + F +G+AP    SL  +L+     
Sbjct: 124 MHSVAKFYRQQLKNHPTSEEAKTYLKQRGLTSEIAKEFVIGFAPPGWDSLVSNLKADATL 183

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +++++E G+LI       +YDRFR+R++FPIR  RG+VIAFGGR LS  E  KYLNSPET
Sbjct: 184 KQQLVETGMLIQK-EDGKTYDRFRHRIMFPIRDGRGRVIAFGGRVLSSEEQPKYLNSPET 242

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHK   LY  +               R   + I++VEGYMDV++L Q G++N V++LG
Sbjct: 243 PIFHKTVTLYGLYEMRQA----------RQQVNHILVVEGYMDVVALAQFGIRNAVATLG 292

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA+T   L ++++    +V CFDGD+ G +AA+KA++L L  +     + F+ L +GEDP
Sbjct: 293 TAITTEHLDIMFRQVNEVVFCFDGDEAGQKAAWKALELALPKMQDTRSIKFLFLDQGEDP 352

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETEN--RSFNTPDERAELEIHLKNCINHIKD 417
           DS +R  G   F+K I +++ L   L+K          +T + + +L       I     
Sbjct: 353 DSTVRQEGVEGFQKRIQQAMTLSGFLFKGLIGRLGSPVSTVEGQQQLIALATPYITSAP- 411

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             +    ++ + D +     +            K+ +  +  + P +    S +++    
Sbjct: 412 GAMPDLLTKVLSDYVDVPVWRLGQIMGIRVSSTKQPSAKKKNEQPVRIKATSIVLRLIRL 471

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  A +         +LQE  +        N E + L   +    ++Q  ++ E +
Sbjct: 472 LMLRSHWATVFS-----DELLQELQES------HNAEFRFLAQSI--QVLKQNAYISESL 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L E     +LKQ+        +     EA I +  +     +    +     + K+ 
Sbjct: 519 ESWLGEPNRAHVLKQV------YAIVIQENEAFIENEFKAIVLQIGSELKK---EKDKKS 569

Query: 598 IEKQI 602
           ++K++
Sbjct: 570 LQKKL 574


>gi|242279083|ref|YP_002991212.1| DNA primase [Desulfovibrio salexigens DSM 2638]
 gi|242121977|gb|ACS79673.1| DNA primase [Desulfovibrio salexigens DSM 2638]
          Length = 579

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 165/618 (26%), Positives = 281/618 (45%), Gaps = 55/618 (8%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I+ +   + I +++ +YV+        V G +   CPFH+EKT SF  N  +GF+YCF C
Sbjct: 6   IEAIKERLDIVDIVRRYVELK-----PVSGRWMGLCPFHNEKTASFSVNGEEGFFYCFGC 60

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLIEVAT 125
              GD   F S + G  F +++++LAA AGV L    VDP+  K+   +   + + E A 
Sbjct: 61  QASGDIFDFYSHINGVEFKDALEQLAAEAGVELTPGKVDPQAAKRSSERKIFMDMHEHAA 120

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
            +F   LK    +    Y++ RG+D+  IE F LG + D    L ++L  KG++ E+ ++
Sbjct: 121 KYFSRMLKLPEGREARKYIEGRGMDTSVIESFGLGCSTDDWQGLEKYLVSKGYTAEQGVK 180

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
           AGLL        +YDRFR RLIFPI +  G+VIAFGGR ++ GE  KYLNS +T ++ KG
Sbjct: 181 AGLLSQN-AKGRTYDRFRARLIFPITNLSGRVIAFGGRIITNGEP-KYLNSSDTPIYKKG 238

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
           ++LY    A N + ++ R           +L EGYMDV+SL Q G  N    LGTALT  
Sbjct: 239 EHLYGLSTARNSIARTKRA----------LLTEGYMDVISLHQFGYTNSCGVLGTALTPD 288

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
           Q++ L     +I L FDGD  GL+AA ++ ++    L  G     V+L  GED DS ++ 
Sbjct: 289 QVKRLSGFCSKIDLVFDGDAAGLKAALRSTEM---ILTQGVSCGVVVLPDGEDVDSILQS 345

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            G   F+  + ++   ++   +   +  S     + A+        +  +    LR +Y 
Sbjct: 346 RGAEGFQVFLDKARDGLEFSLETLQKGYSPREVMDWAQG------FLKRMTSASLRAFYL 399

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             +   L     +  +  SG         ++  Q+   +                     
Sbjct: 400 PKVASGLGVAEAELRSVFSGALNAPVPQQQNTVQRDQPRAATPVGAQVKDD--------K 451

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L   + HP  + E  +        ++  + LWS + +          ++I   L +  
Sbjct: 452 YFLRYAVKHPEYVVELSERGVAQVLTSHWGKTLWSKIAAH-------SGQDIIPLLDDSE 504

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
                    R      +  A +  ++ D  +   + +A  +R+ +  ++  +    + + 
Sbjct: 505 --------KRFYAGCRMEEALSGEDLEDEWRHVCRVIA-RRRYDMGRKKLTDA---LRRA 552

Query: 606 TAKGEAEKTAILISILHE 623
            A+G+ E+    + +L++
Sbjct: 553 QAQGDTERVNAYLKVLND 570


>gi|302380647|ref|ZP_07269112.1| DNA primase [Finegoldia magna ACS-171-V-Col3]
 gi|302311590|gb|EFK93606.1| DNA primase [Finegoldia magna ACS-171-V-Col3]
          Length = 599

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 153/632 (24%), Positives = 279/632 (44%), Gaps = 46/632 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+D I ++     I ++IG YV+  R  +N     Y   CPFH+EKTPSF  + SKG +
Sbjct: 8   IPQDKIDEIKSVADIVSVIGDYVELKRSGSN-----YIGLCPFHNEKTPSFSVSPSKGIF 62

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C V GD +SF+    G S+ E+++ LA   G+ L   +   ++K + +  L  +  
Sbjct: 63  HCFGCGVGGDVISFIMQKEGLSYPEAIKFLADKLGI-LVETNEVNKEKYEHRKKLFAINN 121

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  FF+ +L      + +    +         +       D + SL  HL QKG+ ++ 
Sbjct: 122 EAKLFFYKNLLINDVPKEYIKKRDLTNSMINKFIIGYA---DGKNSLYRHLLQKGYQKDD 178

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           IIE GL    +     +D+FRNRL+FPI   RG +I FGGRTL      KY+NSP+++ +
Sbjct: 179 IIEVGLANQDERGNI-FDKFRNRLMFPIIDIRGNIIGFGGRTL-ADAKAKYMNSPQSLAY 236

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K KN+Y      N  +              IILVEGYMDV+SL   G    ++SLGT+L
Sbjct: 237 DKSKNVYGVSNLKNSTK-----------VGKIILVEGYMDVISLTNYGFDFAIASLGTSL 285

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q +L+ +    I +C+DGD  G  A  +AI +           N +++    DPD +
Sbjct: 286 THDQAKLIKRYCKNIYICYDGDSAGQNATSRAIQV---FKEIDISPNIIVIPDNLDPDDY 342

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I+ YG  +F KLI  ++  +   +K+  +    N   E+ +L   L   ++ +    +R 
Sbjct: 343 IKKYGNESFNKLIDNAMDSIIYEYKKILKKYDINDVKEKIQLIDDLTTLLSKLDRAVIRD 402

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y +   + LQ       T+ S      K N     +      ++  +L +   +     
Sbjct: 403 EYIKKFAEDLQIDDNSLRTDVSDKLSVAKPNISVNREVTEYSDVLDINLQEKITAI---- 458

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
               ++     +  I +   ++++  + D         F  + +++      +E      
Sbjct: 459 ---EIMTIACFYRDIYETIKEDVSKFKTDIIYYNNFMEFADNYYLKNNEKEIDE------ 509

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                 +       ++           +   +       + L  +  L++++K++I++Q+
Sbjct: 510 ----NSVRDYFKNDIQMDRTIDYLFNTSRNSININSIDRVILEIKKYLITQEKDKIKQQL 565

Query: 603 AQVTAK--GEA--EKTAILISILHEVHIQIHQ 630
             + +    +   E+   +++ + E++ Q+ +
Sbjct: 566 DLMQSVDFNDKINEEYKEILNKILEINRQLKE 597


>gi|255655464|ref|ZP_05400873.1| DNA primase [Clostridium difficile QCD-23m63]
          Length = 596

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 159/636 (25%), Positives = 295/636 (46%), Gaps = 45/636 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN  +D I+++     I+++I +Y+   +   N     Y   CPFH EKTPSF+ N SK 
Sbjct: 1   MNDIKDIIEEIKARCDIASIISEYMSIKQSGAN-----YKGLCPFHGEKTPSFYINTSKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIR 119
            Y CF C   GD ++F+  +    F+++V+ LA   G+ +    + +   K +       
Sbjct: 56  IYKCFGCGEGGDIINFVMKMENLDFMDAVKILANKCGIEINTNMNEETRIKIEKSKKFQD 115

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +   A  F+  +L  +++   + YL  RG+D   I+ F LG++ DS  SL   L  KG+ 
Sbjct: 116 IHTEAARFYLSNLLGSKN-LGYEYLRIRGLDDKIIKKFGLGFSLDSWNSLMNTLISKGYK 174

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ ++E GL+    +    YD+FRNR++FPI   RG +I FGGR L      KYLNSP+T
Sbjct: 175 KQDLLECGLIAKNRDGTNCYDKFRNRVMFPIFDYRGNIIGFGGRVL-DDSLPKYLNSPDT 233

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           ++F+K +NLY    A   L            S  I+LVEGYMD++SL Q G++NVV++LG
Sbjct: 234 LIFNKKQNLYGLNFARKNL-----------ESKTIVLVEGYMDLISLYQYGIKNVVATLG 282

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q  L+ + +   ++ +D D+ G++A  +AID+       G  V  + L   +DP
Sbjct: 283 TALTEQQGLLIKRYADTAIISYDSDEAGIKATLRAIDI---LTKLGINVKVLDLKDAKDP 339

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D F+R YG + ++K +  S   +        +  +    +ER +        I  +    
Sbjct: 340 DEFVRKYGLSDYKKAMDVSTHYIKYKIDHLKKEFNIQKDEERVKFAKEASKIIKQLTSPV 399

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
              +Y++ + +++    +    E   YG+ + K   +++QK   +++++   V+      
Sbjct: 400 EIDFYTKYLSNQIDINVESIKREV--YGKNYNKPYNNKNQKKIEEKVIEKVEVRQDGK-- 455

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             L E  L+  ++    I +    ++ +  +   E +++ +++       +      I +
Sbjct: 456 -QLVEETLIKIMLEDKKIREIALLKVEESDFLLKESKEILNYMIK----NQELDKITIDK 510

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                   E LK+L+    ++     T E           + +    R   L  Q   + 
Sbjct: 511 LKSLNISEEYLKELNSISLNSINLENTKEI----------EGIITNIRKNSLEEQINSLL 560

Query: 600 KQIAQVTAKGE----AEKTAILISILHEVHIQIHQI 631
           ++  ++    +      +   +   + E++  +  +
Sbjct: 561 REQQELENNNDMKEVDGRVMEIALKIVEINKILKSL 596


>gi|91762831|ref|ZP_01264796.1| DNA primase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718633|gb|EAS85283.1| DNA primase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 591

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 161/633 (25%), Positives = 288/633 (45%), Gaps = 48/633 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP++++ ++   + +S ++ + V   +R       ++    PF  EKTPSF  ND K 
Sbjct: 1   MKYPKEYLDEIKTRLKVSTVVSKSVSLKKRGK-----EFVGLSPFKTEKTPSFTVNDEKE 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF+    G+   F+       F E+V+ LA +AG+       + E++EK   +   +
Sbjct: 56  FYHCFATSEHGNIFDFVMKTQNLKFGEAVKSLANLAGMRPYTFSKQDEEREKNWQEYCSI 115

Query: 121 IEVATDFFH-HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
                 F+H   LKN        YL +R +    ++ FK+G+    R S      +  FS
Sbjct: 116 YNQYVQFYHDEILKNESLTIARDYLKKRNLSKDEVKNFKIGFV--ERNSNFYEKLKDEFS 173

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238
           E+ ++E+GL    +   T  +RFR+R+IFPI +  GQ I  GGRT+ +     KY+NSPE
Sbjct: 174 EKVLVESGLFYLDEKKNTYVERFRDRIIFPINNISGQPIGLGGRTIQENSYSAKYINSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T  F KG NLYN   A     K             + LVEGYMDV+ L + G++NVV++L
Sbjct: 234 TPFFKKGSNLYNLDLARRLSNKI----------DHVYLVEGYMDVVGLSKNGIENVVANL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT+ Q+ +L +    I++CFDGD+ G +AA +A +  +  L P  +++F+ L  GED
Sbjct: 284 GTSLTDRQILMLNQFFEDIIICFDGDESGYKAALRAAENSIKELQPEKQISFLFLPDGED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS+    GK  F     ++   +        + ++ N P   A  E  L+     IKD 
Sbjct: 344 PDSYANKNGKANFIDFTKQAKISIHQFIFNHYKQQTDNNPSSMAIFEKKLRAIAATIKDD 403

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            ++ Y  +   +++  L                   +   +K  S +  Q    + KL  
Sbjct: 404 FIKKYVLEFFLEKISSLTPHSNI----------GKKQFYTKKVKSLQSTQKHFNESKLLS 453

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              L+E +LL  ++N+  + QE    + +I   + E + +   L +     +    ++I 
Sbjct: 454 GFELKEFSLLYLIMNNLDLFQENIHMIENINLFSEENKLILETLINKLKSGEKLTLDQIP 513

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-- 596
                    +L +++ +      +           +         +++    +SR  +  
Sbjct: 514 ID------PQLTEKIFKFASIKHI-----------LNNHQNDQNKMFELLDEVSRDLKNY 556

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++E +I ++ +K   + +    + + E+  Q +
Sbjct: 557 DLEFRIEELESKFSKDLSESTFNEIRELKKQKN 589


>gi|253752139|ref|YP_003025280.1| DNA primase [Streptococcus suis SC84]
 gi|253753964|ref|YP_003027105.1| DNA primase [Streptococcus suis P1/7]
 gi|253755899|ref|YP_003029039.1| DNA primase [Streptococcus suis BM407]
 gi|251816428|emb|CAZ52061.1| DNA primase [Streptococcus suis SC84]
 gi|251818363|emb|CAZ56189.1| DNA primase [Streptococcus suis BM407]
 gi|251820210|emb|CAR46612.1| DNA primase [Streptococcus suis P1/7]
 gi|319758522|gb|ADV70464.1| DNA primase [Streptococcus suis JS14]
          Length = 596

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 144/636 (22%), Positives = 259/636 (40%), Gaps = 50/636 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I ++   + I ++IG+ V   +   N     Y   CPFH EKTPSF+  + K FY
Sbjct: 2   LSKDKITEIKQALNIVDVIGETVALTKAGRN-----YVGLCPFHGEKTPSFNVIEDKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
           +CF C   GD   F+  + G SF ++   LA  AG  + V     + EK+      L  +
Sbjct: 57  HCFGCGKSGDVFKFVEEVRGVSFADAAAILAEKAGFQIDVTPSYHQEEKRVSPHQVLYDI 116

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    I+ F+LG AP  +  L + L  +   
Sbjct: 117 HRDAAKFYHALLMTTKMGEEARAYLHQRGLTDDVIKTFQLGLAPAEQNILYQKLSGQYDE 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-----KYL 234
           E  +           +   YD F+ R+IFP+    G+++AF GR  ++         KY 
Sbjct: 177 ESLLNSGLFN--PSENNIIYDAFQARIIFPLADEYGRIVAFSGRIWTEENRNNKQLAKYK 234

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS  T +F+K   LY+   A   ++K               L+EG++DV++  + G+ N 
Sbjct: 235 NSRSTAIFNKSYELYHLDKAKAVIKKQ----------RETYLMEGFLDVIAAHRVGIDNA 284

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +  L K   +IVL +DGD  G  A  KA+D +    +       V L 
Sbjct: 285 VASMGTALTREHVAHLAKFCKKIVLTYDGDKAGQAATMKALDELQDFQVE-----IVSLP 339

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD F++   + A ++++ +S         +  +  + +    + E    +   I  
Sbjct: 340 DNMDPDEFLQKNSEEALQQVLTKSRISDVEFLIQYLKPENPDNLQMQIEFVDKIAPIIAK 399

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVK 473
           +     +  Y   + D L       + +     R  ++  R +   +  + +     +  
Sbjct: 400 VSSITAQNSYIYKVADLLSDFDYNQVEQAVNAVRLNQRQERTQQVFQSQTGQSYLPPVQT 459

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                     E  LL  ++ HP IL E ++   D  +   ELQ ++  +     E   F 
Sbjct: 460 IARITSLIRTENHLLYRMVEHPYILNE-FRLREDFYFATPELQAIYD-MLKKSGEITSFE 517

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             +++    +  +    ++L                   +V     + L + +   LL +
Sbjct: 518 LSQLNDSAQQAWYRMQEERL-----------------PDEVSPHEIEELEIRRDKELLKK 560

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + + + ++I + +  G A+     +  L +   Q+ 
Sbjct: 561 ENQHLARKIREHSHVGNADIALDELQKLLDRRRQME 596


>gi|296876771|ref|ZP_06900819.1| DNA primase [Streptococcus parasanguinis ATCC 15912]
 gi|296432273|gb|EFH18072.1| DNA primase [Streptococcus parasanguinis ATCC 15912]
          Length = 621

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 142/632 (22%), Positives = 261/632 (41%), Gaps = 48/632 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            ++ I ++   + I  +IG+ V   +   N     +   CPFH EKTPSF+  + K FY+
Sbjct: 32  DKELIVEIKNSVNIVEVIGEVVSLTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFYH 86

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE-KIQTDLIRLIE 122
           CF C   GD   F+    G SF+++VQ +A  AG+ L       ++ +     +L  + +
Sbjct: 87  CFGCGRSGDVFKFIEDFRGVSFMDAVQIVAEKAGIALQYQARPNQQAQVNPHQELYEIHQ 146

Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A+ F+   L      +    YL ERG+    I  F+LG AP +   L  +L +K   + 
Sbjct: 147 EASKFYQAILMTTKMGEEARNYLHERGLTDEVIRHFQLGLAPAAGNYLYRNLSEKFSEKV 206

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK----GESVKYLNSP 237
                   I      T +D F++R++FP+    G+VIAF GR   K        KY NS 
Sbjct: 207 ITDSGLFTISDTG--TVFDAFQDRIMFPLTDDSGRVIAFSGRLWKKIDDGSHHAKYKNSR 264

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
            T LF+K   LY+   A    +K             + ++EG+MDV++  +AG++N V+S
Sbjct: 265 STRLFNKSYELYHLDQAKASAKKQ----------HEMYVMEGFMDVIAAYRAGIENAVAS 314

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALT   ++ L + S ++VL +DGD  GL A  KA+D++         +  V +    
Sbjct: 315 MGTALTPEHVQHLSRFSKKVVLTYDGDKAGLEATAKALDVLQ-----DLELEIVRIPDQM 369

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++         L+  S         +  + +       + E    +   I   + 
Sbjct: 370 DPDEYLKKTSPEDLAGLLKNSRISKVEFLMQYWKPQYIENLQAQIEFVEKMAPIIAQTRS 429

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              +  Y   + D L       I +     R  ++       +  +       L    ++
Sbjct: 430 ITAQNTYIYKLADLLPDFDYLQIEQIVNNSRLHQRQEAQSSGQSRTSNFSVDLLPNRGMT 489

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           +     E  LL  + + P +L +  +   D  +D  ELQ L+  L     +      +++
Sbjct: 490 RLIK-AENHLLSRMKDFPMVLNDY-RLRPDFSFDTPELQILYQLLC----QNGEVTSQDL 543

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            ++                      +    E    ++  G  + +   +   LL ++ ++
Sbjct: 544 SEQAEG--------------VQHAWYRMLEEDLPEEIADGELEEVEATRTRELLRKESQQ 589

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           I  ++ + ++ G+AE+  + +  L     ++ 
Sbjct: 590 IGNKVKEASSTGDAERALLELERLIAQKRRME 621


>gi|71082747|ref|YP_265466.1| DNA primase [Candidatus Pelagibacter ubique HTCC1062]
 gi|71061860|gb|AAZ20863.1| DNA primase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 591

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 161/633 (25%), Positives = 288/633 (45%), Gaps = 48/633 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M YP++++ ++   + +S ++ + V   +R       ++    PF  EKTPSF  ND K 
Sbjct: 1   MKYPKEYLDEIKTRLKVSTVVSKSVSLKKRGK-----EFVGLSPFKTEKTPSFTVNDEKE 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF+    G+   F+       F E+V+ LA +AG+       + E++EK   +   +
Sbjct: 56  FYHCFATSEHGNIFDFVMKTQNLKFGEAVKSLANLAGMRPYTFSKQDEEREKNWQEYCSI 115

Query: 121 IEVATDFFH-HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
                 F+H   LKN        YL +R +    ++ FK+G+    R S      +  FS
Sbjct: 116 YNQYVQFYHDEILKNESLTIAREYLKKRNLSKDEVKNFKIGFV--ERNSNFYEKLKDEFS 173

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238
           E+ ++E+GL    +   T  +RFR+R+IFPI +  GQ I  GGRT+ +     KY+NSPE
Sbjct: 174 EKVLVESGLFYLDEKKNTYVERFRDRIIFPINNISGQPIGLGGRTIQENSYSAKYINSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T  F KG NLYN   A     K             + LVEGYMDV+ L + G++NVV++L
Sbjct: 234 TPFFKKGSNLYNLDLARRLSNKI----------DHVYLVEGYMDVVGLSKNGIENVVANL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT+ Q+ +L +    I++CFDGD+ G +AA +A +  +  L P  +++F+ L  GED
Sbjct: 284 GTSLTDRQILMLNQFFEDIIICFDGDESGYKAALRAAENSIKELQPEKQISFLFLPDGED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS+    GK  F     ++   +        + ++ N P   A  E  L+     IKD 
Sbjct: 344 PDSYANKNGKANFIDFTKQAKISIHQFIFNHYKQQTDNNPSSMAIFEKKLRTIAATIKDD 403

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            ++ Y  +   +++  L                   +   +K  S +  Q    + KL  
Sbjct: 404 FIKKYVLEFFLEKISSLTPHSNI----------GKKQFYTKKVKSLQSTQKHFNESKLLS 453

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              L+E +LL  ++N+  + QE    + +I   + E + +   L +     +    ++I 
Sbjct: 454 GVELKEFSLLYLIMNNLDLFQENIHMIENINLFSEENKLILETLITKLKSGEKLTLDQIP 513

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-- 596
                    +L +++ +      +           +         +++    +SR  +  
Sbjct: 514 ID------PQLTEKIFKFASIKHI-----------LNNHQNDQNKMFELLDEVSRDLKNY 556

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++E +I ++ +K   + +    + + E+  Q +
Sbjct: 557 DLEFRIEELESKFSKDLSESTFNEIRELKKQKN 589


>gi|42521866|ref|NP_967246.1| DNA primase [Bdellovibrio bacteriovorus HD100]
 gi|39574396|emb|CAE77900.1| DNA primase [Bdellovibrio bacteriovorus HD100]
          Length = 622

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 161/649 (24%), Positives = 277/649 (42%), Gaps = 51/649 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF--HDEKTPSFHCNDS 58
           M + +DFI+ +     + ++I QY       +          CPF  H EKT SF  +++
Sbjct: 1   MRFSQDFIEKVQEANNLVDIISQYTQLKPSGSGL-----MGRCPFPDHAEKTASFSVSET 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQT 115
           K  Y+CF CH  G+  SFL    G SF E+V+ LA  A +P+P  D +  ++++    + 
Sbjct: 56  KQVYHCFGCHKSGNLFSFLRDYQGMSFPEAVEYLAGRASIPMPAPDKEDAQRDQASDKKK 115

Query: 116 DLIRLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            L+++ ++A D+F   LK    D  +  Y+  RG+    IE F +GYA      L ++L 
Sbjct: 116 LLLKVNKLAADYFSEQLKRAPHDHPVKKYIASRGLSQEVIETFGVGYALPEWDGLEQYLL 175

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKY 233
            K        EA L+   +N +  +D FR+RL+FPI S+ G+ IAFGGR L K E+  KY
Sbjct: 176 SKNVPMALAEEARLVKARNNKSGHFDIFRDRLMFPILSAMGEPIAFGGRYLEKKENEPKY 235

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +F KGK LY       Y++          S    ++VEGYMD++SL QAG++N
Sbjct: 236 LNSPETPVFVKGKVLYGLSQTARYIR----------SEDLALIVEGYMDLVSLYQAGIRN 285

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           VV+++GTALT    ++L +++  +V  FDGD+ G+ AA +++ +    L        + L
Sbjct: 286 VVATMGTALTPDHGKMLKRMTKNVVALFDGDNAGMEAAERSLPI---LLAADLYPKGLTL 342

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DPD +++ YG  A +  +  +  L  M+  R  E    +  + + +L   LK    
Sbjct: 343 PNGMDPDDYVKKYGSEALKVELERAPDLFVMILARWMEGYRGDASE-KVKLADKLKPLFE 401

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR--------------DQ 459
            I D +LR  Y      ++              G     +                    
Sbjct: 402 SIPDLRLRDLYLAEAAQKMNVGLPWLRQAVGIQGSGPVNSQNRPAMTRTVQPNPNMGSAN 461

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
           + P Q +  S        +  S  E  LL  ++   A   +   E       +  ++K+ 
Sbjct: 462 QKPPQEVSSSVEGGKISLQGASKAELMLLGLVLKSRANFDQFVNENLLESVAHEGVKKIL 521

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN--IVDVRQG 577
                 + +       +      ++    L+  +D+      +  A         +    
Sbjct: 522 EKATDVYRQ----DLSKF-----DKLTSLLVSYVDQPEYLFQVSPANEGDPGYDEEAETK 572

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
             +      +   L  Q + + + +    +  + E+   +      ++ 
Sbjct: 573 LLRDCFKRVKENFLRDQAKRLARDLKNEPSSDKLEQIMNIQRNRISLNK 621


>gi|257791464|ref|YP_003182070.1| DNA primase [Eggerthella lenta DSM 2243]
 gi|257475361|gb|ACV55681.1| DNA primase [Eggerthella lenta DSM 2243]
          Length = 626

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 154/644 (23%), Positives = 256/644 (39%), Gaps = 44/644 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I+ +     +  +IG+     +R       D+W CCP H+EKTPSF  + +   +
Sbjct: 5   ISEEDIQKVREANDLVEVIGERTPVKQRGR-----DFWCCCPLHNEKTPSFKIDPALQLW 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD   F+      SF E+V+RLA  A + +     +       +  L  + +
Sbjct: 60  HCFGCGEGGDVFGFIMKTEDLSFPEAVRRLAERAHIDIAESGGRKSIGSSRKARLKAVCD 119

Query: 123 VATDFFHHSLKNARD---KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             + F+H  L             YL  RG+     + ++LG+AP     L  HL  KGF 
Sbjct: 120 ETSQFYHCQLMRNPGSDASAARSYLGARGLGGEVPKTWQLGFAP-GHGQLVRHLSAKGFK 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            +++++A +    ++     DRF NR++FPI   +G+ IAFGGR + KGE  KYLNS ET
Sbjct: 179 PDEMVQANVA-LSNDGGKLRDRFYNRIMFPINDPQGECIAFGGRVVGKGEP-KYLNSQET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LFHK + LY    A   +           S+   ++VEGY DV++L +AGV+N V++LG
Sbjct: 237 PLFHKSQVLYGMDKAKAAMA----------STGISVVVEGYTDVIALHEAGVRNAVATLG 286

Query: 300 TALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAI-----DLVLCHLIPGNRVNFVLL 353
           TALT   +RLL      RIV  FDGD+ G RAA +A+      +          +  V L
Sbjct: 287 TALTMRHIRLLSRHAQHRIVYLFDGDEAGQRAADRALAFIDDSMTPEAGKSRIELAAVTL 346

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DP  F+   G    +KLI  + PL+    +R       +  + RA         + 
Sbjct: 347 PDNLDPADFVAQRGAEELQKLIANAQPLLKYGIERRLARHDLSRAEGRAAALADALQVLA 406

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            IKD  L   Y+  I   ++   Q  I +         +  R  +          +    
Sbjct: 407 PIKDSMLARDYAVQIATSVRAREQDVIDQLEHLKAPKAEGERDDESAPEGFERAVAPRRP 466

Query: 474 GKLSKKPSLR----EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            +   +  +     E  LL      P +       LA  ++       +   +     E 
Sbjct: 467 ARNLPRAEINRRRFERQLLTLAARRPDLALLHADALAQTQWHEQAHAAIAQSMLDVLAED 526

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                  +          E  + L          + +  A    +     + LA+     
Sbjct: 527 PAASSARLVT--------EASRALPDAAAVLTSGTVSETAAPEQLAAFLVEELAIGDAED 578

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +      +  QIA   ++ + ++  +L   +  +   + +  +
Sbjct: 579 AVG----ALRAQIAD-PSRLDPDELEMLYEAVAAMQQDLKRRRA 617


>gi|224535830|ref|ZP_03676369.1| hypothetical protein BACCELL_00694 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522553|gb|EEF91658.1| hypothetical protein BACCELL_00694 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 694

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 169/696 (24%), Positives = 286/696 (41%), Gaps = 93/696 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++  +V   +R  N     Y   CPFHD+KTPSF+ + SKG  
Sbjct: 2   IDQPTIDRILDAAQIVDIVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPSKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CFSC   G+ + F+      S+ E+++ LA   G+ +   +   E+K  +  +  L  +
Sbjct: 57  KCFSCGKGGNAVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSSEEKLMQSERESLFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y   RG     IE F+LGY  +S  ++ +   +KGF
Sbjct: 117 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDAMAQEAIRKGF 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 177 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLSSATKGVKVKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+GV+NVV
Sbjct: 236 SPESEIYHKSSELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q++L+ + +  I + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 286 ASSGTALTPGQIKLIHRFTNNITVLYDGDVAGIKASLRGIDM---LLEEGMNIKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPDSF R +  T F+K I ++               +   P +RAEL  +L   I+ I
Sbjct: 343 GEDPDSFARKHNATEFQKFIQDNETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISII 402

Query: 416 KDQKLRYYYSQAIRDRLQQ-------------LFQKYITEHSGYGRYWKKNARHRDQKGP 462
            +  +R  Y +     L+                Q             K NA     + P
Sbjct: 403 PEAIVRDVYIKECSQLLRIEDKLLVSEVAKRRETQAEKQAEQRNRETRKNNAARDAAQAP 462

Query: 463 SQRLMQSSLV--------------------------------KGKLSKKPSLREAALLLT 490
               MQ                                    +GK  ++    E  +L  
Sbjct: 463 LPDGMQPPYPEDIPPYPMDGEMPDGGAPLPPEAAEYVSYIPQEGKEGQEFYKYERLILQM 522

Query: 491 LINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKY 531
           ++ +                   + +    +L   ++ + N   +++ +        + +
Sbjct: 523 VVRYGEKVLCNVPDEEGKEIPITVTEYVVNDLKEDELAFHNPLHRQMLTEAAEHIHNEGF 582

Query: 532 FLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                      +    +L  +L  DR         A       +        L +  +F 
Sbjct: 583 TAERYFLAH-PDPIISKLSTELIADRYQLSKYHSKAQRLVTDEERLFELVPTLMINFKFA 641

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           ++S + + +   +       + E+   ++    E+ 
Sbjct: 642 IISEEMKHMMYALQDPAVANDEEQCTSIMKRYSELR 677


>gi|307154654|ref|YP_003890038.1| DNA primase [Cyanothece sp. PCC 7822]
 gi|306984882|gb|ADN16763.1| DNA primase [Cyanothece sp. PCC 7822]
          Length = 632

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 156/641 (24%), Positives = 273/641 (42%), Gaps = 38/641 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                ++D+   + I ++I +YV   +R            CPFH+EK+PSF+ + SK  Y
Sbjct: 6   LDPQTLEDIKQRVDIVDVISEYVVLHKRGK-----SLVGLCPFHNEKSPSFNVSPSKQVY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDLI 118
           +CF C   G+ ++FL  L   SF E    LA    +PL  + P+  ++ +     +  L 
Sbjct: 61  HCFGCGAGGNAITFLMELRKQSFYEVALDLAKRYQIPLKTLSPQEHQQLQRQLSLKEQLY 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGI-DSHAIEMFKLGYAPDSRYSLREH-LRQK 176
            ++ VA +F+ H+L+    ++   YL E+       I+ F+LGYA     +L  + + QK
Sbjct: 121 EIVAVAANFYQHALRQPEGEKALNYLKEKRHLKEETIQQFQLGYALPGWETLYRYLVEQK 180

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    + +AGL+    +    YD FR+RL+ PI   +G+VIAFG RTL   E  KYLNS
Sbjct: 181 RYPVTLVEQAGLIKQRQSGNGYYDGFRDRLMIPIHDVQGRVIAFGSRTLGTDEP-KYLNS 239

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET LF KGK L+    A   +                ++VEGY D ++L  AG+ NVV+
Sbjct: 240 PETPLFDKGKTLFALDKAAKSI----------TQQDQAVVVEGYFDAIALQAAGITNVVA 289

Query: 297 SLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVLL 353
           SLGTA ++ QL+ L + +   +I+  FD D  G++A  +AI  +   +  G  ++  + L
Sbjct: 290 SLGTAFSQVQLKQLLRYTDSKQIIFNFDADQAGIKATERAITEISSLVNSGQVQLKILNL 349

Query: 354 SRGEDPDSFIR--CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
             G+D D F+         F  L+  +    D L K+     +    D+   +   +   
Sbjct: 350 PDGKDADEFLNSSPDAGEKFRDLLKTAPLWFDWLLKQLLSQYNLKAADQFQIVAQRMVQL 409

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           ++ +++   R YY     + L Q  Q  I  H        +  +    K  S    Q++ 
Sbjct: 410 LSQLQNPYQRTYYINYCAEILSQGDQSRIRLHENNLSKQLRKIKLNFSKN-SPLPSQNNE 468

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQ 529
           +      +  L E  LL   ++ P    E   +L +    +  +  + LW  +     E+
Sbjct: 469 ILSDEKTRLELVEKMLLKIYLHCPLHRPEIKAQLEEKDLYFSLSHHRFLWQQILDI--EE 526

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           K+      H +       + L  +              E    D+          +    
Sbjct: 527 KFQSEINSHDQRLLSLLQDKLLDITEYREKLQSLFYLNEIGEEDIFAAAINIQKAFNSLE 586

Query: 590 LL--SRQKEEIEKQIAQVTAKGEA----EKTAILISILHEV 624
           ++   + K   ++Q +   +  +     E+ + +   L  +
Sbjct: 587 IISHEKYKRYCKEQFSSAKSLQDQRYWHEELSRVAQQLQAL 627


>gi|169824521|ref|YP_001692132.1| DNA primase [Finegoldia magna ATCC 29328]
 gi|167831326|dbj|BAG08242.1| DNA primase [Finegoldia magna ATCC 29328]
          Length = 595

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 153/632 (24%), Positives = 278/632 (43%), Gaps = 46/632 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+D I ++     I ++IG YV+  R  +N     Y   CPFH+EKTPSF  + SKG +
Sbjct: 4   IPQDKIDEIKSVADIVSVIGDYVELKRSGSN-----YIGLCPFHNEKTPSFSVSPSKGIF 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C V GD +SF+    G S+ E+++ LA   G+ L   +   ++K + +  L  +  
Sbjct: 59  HCFGCGVGGDVISFIMQKEGLSYPEAIKFLADKLGI-LVETNEVNKEKYEHRKKLFAINN 117

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  FF+ +L      + +    +         +       D + SL  HL QKG+ ++ 
Sbjct: 118 EAKLFFYKNLLINDVPKEYIKKRDLTNSMINKFIIGYA---DGKNSLYRHLLQKGYQKDD 174

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           IIE GL    +     +D+FRNRL+FPI   RG +I FGGRTL      KY+NSP+++ +
Sbjct: 175 IIEVGLANQDERGNI-FDKFRNRLMFPIIDIRGNIIGFGGRTL-ADAKAKYMNSPQSLAY 232

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K KN+Y      N  +              IILVEGYMDV+SL   G    ++SLGT+L
Sbjct: 233 DKSKNVYGVSNLKNSTK-----------VGKIILVEGYMDVISLTNYGFDFAIASLGTSL 281

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q +L+ +    I +C+DGD  G  A  +AI +           N +++    DPD +
Sbjct: 282 TYDQAKLIKRYCKNIYICYDGDSAGQNATSRAIQV---FKEIDISPNIIVIPDNLDPDDY 338

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I+ YG  +F KLI  ++  +   +K+  +    N   E+ +L   L   ++ +    +R 
Sbjct: 339 IKKYGNESFNKLIDNAMDSIIYEYKKILKKYDINDVKEKIQLIDDLTTLLSKLDRAVIRD 398

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y +   + LQ       T+ S      K N     +      ++  +L +   +     
Sbjct: 399 EYIKKFAEDLQIDDNSLRTDVSDKLSVAKPNISVNREVTAYSDVLDINLQEKITAI---- 454

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
               ++     +  I +   ++++  + D         F  + +++       E      
Sbjct: 455 ---EIMTIACFYRDIYETIKEDVSKFKTDIIYYNNFMEFADNYYLKNNEKEINE------ 505

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                 +       ++           +   +       + L  +  L++++K++I++Q+
Sbjct: 506 ----NSVRDYFKNDIQMDRTIDYLFNTSRNSININSIDRVILEIKKYLITQEKDKIKQQL 561

Query: 603 AQVTAK--GEA--EKTAILISILHEVHIQIHQ 630
             + +    +   +K   +++ + E++ Q+ +
Sbjct: 562 DLMQSVDFNDKINQKYKEILNKILEINRQLKE 593


>gi|292558724|gb|ADE31725.1| DNA primase [Streptococcus suis GZ1]
          Length = 596

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 144/636 (22%), Positives = 259/636 (40%), Gaps = 50/636 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I ++   + I ++IG+ V   +   N     Y   CPFH EKTPSF+  + K FY
Sbjct: 2   LSKDKITEIKQALNIVDVIGETVALTKAGRN-----YVGLCPFHGEKTPSFNVIEDKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
           +CF C   GD   F+  + G SF ++   LA  AG  + V     + EK+      L  +
Sbjct: 57  HCFGCGKSGDVFKFVEEVRGVSFADAAAILAEKAGFQIDVTPSYHQEEKRVSPHQVLYDI 116

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    I+ F+LG AP  +  L + L  +   
Sbjct: 117 HRDAAKFYHALLMTTKMGEEARAYLHQRGLTDDVIKTFQLGLAPAEQNILYQKLSGQYDE 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-----KYL 234
           E  +           +   YD F+ R+IFP+    G+++AF GR  ++         KY 
Sbjct: 177 ESLLNSGLFN--PSENNIIYDAFQARIIFPLADEYGRIVAFSGRIWTEENRNNKQLAKYK 234

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS  T +F+K   LY+   A   ++K               L+EG++DV++  + G+ N 
Sbjct: 235 NSRSTAIFNKSYELYHLDKAKAVIKKQ----------RETYLMEGFLDVIAAHRVGIDNA 284

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +  L K   +IVL +DGD  G  A  KA+D +    +       V L 
Sbjct: 285 VASMGTALTREHVAHLAKFCKKIVLTYDGDKAGQAATMKALDELQDFQVE-----IVSLP 339

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD F++   + A ++++ +S         +  +  + +    + E    +   I  
Sbjct: 340 DNMDPDEFLQKNSEEALQQVLTKSRISDVEFLIQYLKPENPDNLQMQIEFVDKIAPIIAK 399

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVK 473
           +     +  Y   + D L       + +     R  ++  R +   +  + +     +  
Sbjct: 400 VSSITAQNSYIYKVADLLSDFDYNQVEQAVNAVRLNQRQERTQQVFQSQTGQFYLPPVQT 459

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                     E  LL  ++ HP IL E ++   D  +   ELQ ++  +     E   F 
Sbjct: 460 IARITSLIRTENHLLYRMVEHPYILNE-FRLREDFYFATPELQAIYD-MLKKSGEITSFE 517

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             +++    +  +    ++L                   +V     + L + +   LL +
Sbjct: 518 LSQLNDSAQQAWYRMQEERL-----------------PDEVSPHEIEELEIRRDKELLKK 560

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + + + ++I + +  G A+     +  L +   Q+ 
Sbjct: 561 ENQHLARKIREHSHVGNADIALDELQKLLDRRRQME 596


>gi|304437693|ref|ZP_07397645.1| DNA primase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369326|gb|EFM22999.1| DNA primase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 593

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 154/640 (24%), Positives = 260/640 (40%), Gaps = 52/640 (8%)

Query: 1   MNYP--RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M  P    F++ +     I  ++  YV   R+        YW CCPFH EKT SF    S
Sbjct: 1   MRDPRMEAFVQQVRAGTDILAVVQSYVSLKRKGN-----RYWGCCPFHSEKTASFSVVPS 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--D 116
           +GF+YCF CH  GD   FLS +   +  E++ R A   G+  P      +++ +++   D
Sbjct: 56  EGFFYCFGCHAGGDAFKFLSLIEHITPFEAILRQAEQLGIERPARKRDAQEEARLRALDD 115

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L R+  +A DFFH+ L           YL  RGI   AIE + +G+APD+   L +  ++
Sbjct: 116 LRRVNALARDFFHNCLTMTRYGAAGKAYLAGRGITDAAIERYGIGFAPDAWSKLSDAFQK 175

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G +E  +++AGL +  +     YDRFR R+I PI   RG+V+ FGGR L      KYLN
Sbjct: 176 RGVAEHVLVDAGLAVRRERGDGIYDRFRGRVIIPIADERGRVVGFGGRAL-GDAQPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           + ET +F+K K L+    A + + +          + + I+VEGYMD ++  +AGV NVV
Sbjct: 235 TAETPVFNKRKLLFGMDRAHSAIAR----------AGYTIVVEGYMDAIAAWEAGVDNVV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGT+ T     LL + +PRIV C+D D  G  A  +A+  V         +  +LL  
Sbjct: 285 ATLGTSFTSDHAALLLRRAPRIVFCYDSDRAGQEATLRALAAVHGRAA---ELRVLLLPD 341

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPD ++R +G  AF  L+  ++P      +        +  + +      +   +  +
Sbjct: 342 GKDPDEYVRTHGADAFRALVETAVPAPAFHLRHIRAQ-MADGIEGQRTALRAMLPVLAEL 400

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            D   R  Y +     L             + R      +                   +
Sbjct: 401 -DPVERAAYVRRTAAELFLDEGVVADALRRWLRRGGAAEKPAAPTA--------GTPVRR 451

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
             +        L+  +   P  L +    +    + +     ++  + +           
Sbjct: 452 ADRALQRAGRQLIAAVRQDPDFLAQITAAVPLDAFPDEFFGTIFCAVAAQIAAGGVID-A 510

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +           E+ + L              E    + R G             L++  
Sbjct: 511 DFIAAQPAEESAEITRAL------------VEEPPTSEARAGALAVFRRAHLTAALAQHT 558

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
              E  + +  A    E     ++ +  +  ++  I +QE
Sbjct: 559 HRAETMMQEGKAGYVDE-----LNEVKRIQDELAHIGTQE 593


>gi|306833812|ref|ZP_07466937.1| DNA primase [Streptococcus bovis ATCC 700338]
 gi|304424006|gb|EFM27147.1| DNA primase [Streptococcus bovis ATCC 700338]
          Length = 608

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 145/634 (22%), Positives = 261/634 (41%), Gaps = 48/634 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I ++   + I ++IG+ V   R   N     Y   CPFH EKTPSF+  + K F
Sbjct: 17  AIDKELISEIKNSVNIVDVIGEVVSLTRAGRN-----YIGLCPFHKEKTPSFNVIEDKQF 71

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRL 120
           ++CF C   GD   FL      SF+ESV  +A  AG+ L +       K +     LI +
Sbjct: 72  FHCFGCGKSGDVYKFLEEYRQVSFLESVHLVAERAGISLKIDVQQTQTKPQSPNQILIDI 131

Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            + A  F++  LK  +  +    YL +RG+    I+ F +G +P+    L + L ++ + 
Sbjct: 132 HKDAAKFYNAVLKTTKEGQEAKRYLAQRGLTDELIDYFNIGLSPNEPDFLYQSLAKR-YD 190

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
           E  ++ +GL    + +   YD F+NR++FP+    GQ++AF GR  +    + +  KY N
Sbjct: 191 ENVLMGSGLFNLSERTNHVYDAFQNRIMFPLTDDSGQIVAFSGRIWTKEDLENKQAKYKN 250

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +  T LF+K   LY+   A   + K             + L+EG+MDV++  +AG++N V
Sbjct: 251 TRSTALFNKSYELYHLDKARPVMSKK----------HEVYLMEGFMDVIAAYRAGIENAV 300

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   +R L + + +++L +DGD+ G  A  K+++L+    +       V +  
Sbjct: 301 ASMGTALTPDHVRHLKRYTKKVILTYDGDNAGQNAIAKSLELLKDFNVE-----IVRVPE 355

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD FI+     A   L+  +       +    +  + +           +   I   
Sbjct: 356 QMDPDEFIKKNSPQALANLLENNRISSTEFFIHYLKPENNDNLQAEIAYVEQISKIIAQS 415

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                +  Y   + D L       + +     R   ++    +     QR     L   K
Sbjct: 416 PSITAQNSYINMVADLLPDFDYYQVEQSVNSERLQNRSNMQAEVVK--QRATVVELPMSK 473

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E+ L+  L+ H  +L E      +  +D  ELQ L+  L     E   +   
Sbjct: 474 NISAIIKAESQLMHRLLTHDYLLNEFRNR-GEFIFDTQELQALYDLLVQQ-GEVNSYDLA 531

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++  + C+  +  L                  E    ++     + +   +   L  R  
Sbjct: 532 QLDDQTCQMYYRVL-----------------EENLPDEIANNEIEEIIDKRDQLLQERDL 574

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++  K I + +  G+ +     +  L      + 
Sbjct: 575 QKQSKLIRESSNLGDVDAALAALENLIAQKRNME 608


>gi|86132591|ref|ZP_01051184.1| DNA primase [Dokdonia donghaensis MED134]
 gi|85816833|gb|EAQ38018.1| DNA primase [Dokdonia donghaensis MED134]
          Length = 659

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 151/668 (22%), Positives = 262/668 (39%), Gaps = 68/668 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I  +     +  +IG +V+  +  +N     +    PF DE+TPSF  +  K  +
Sbjct: 2   ISKETIDKVFETARVEEVIGDFVNLKKSGSN-----FKGLSPFSDERTPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
             FS    G  +SFL      S+ E+++ LA    + +   +   E+KE    +  +  +
Sbjct: 57  KDFSTGKGGSAVSFLMEHEHFSYPEAIKYLAKKYNIEVEETERTDEQKEAANERESMYLV 116

Query: 121 IEVATDFFHH-SLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A D+FH   L + + K +   Y  ERG  +  IE F+LGY PD   +      ++G+
Sbjct: 117 SEYARDYFHKTMLNSEQGKAIGLSYFKERGFTAATIEKFQLGYNPDQWDAFTSEAIRQGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
             + + + GL I        +DRF+ R++FPI S  G+V+ FGGR L   +   KYLNSP
Sbjct: 177 KLDYLEKTGLSIV--KEEKQFDRFKGRVMFPIHSMSGRVLGFGGRILDSSKKAAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  + A   + K               LVEGY DV+ + Q+G++NVVSS
Sbjct: 235 ESDIYHKSKVLYGIYYAKQAIAK----------EDNCYLVEGYTDVIQMFQSGIENVVSS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ +L+  I + FDGD  G RAA + IDL    L  G  V       GE
Sbjct: 285 SGTALTPEQIRLINRLTKNITVLFDGDAAGQRAALRGIDL---ILEQGMNVRVCSFPEGE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R + K        E+               +   P ++A+    +   I+ I D
Sbjct: 342 DPDSFSRKHSKEEIVAFFDENAKDFIQYKANLLVEEAAGDPVKKADTVRDMVESISKIPD 401

Query: 418 QKLRYYYSQAIRDR-------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
              +  Y Q            L     + + +         +  + +        +    
Sbjct: 402 AIKQEIYVQECARIMEVSETVLYNTLAQILKKDKKQAAKQNRGNQSQPPPEYMSVVPDEM 461

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL------------------------- 505
               +        E  L+ +L+ +  + ++    +                         
Sbjct: 462 PNAVEKVNVLYELERKLIESLLLYGQVEEDFEDLVLKENEDGSLGLVPEVHKLRVFEKIY 521

Query: 506 -----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
                 ++ + N+  + L+  +         F  +     L      E+   +    +  
Sbjct: 522 LDLQDDEVEFTNDLFKVLYVRIVEQMNLNDNFQIQNFINELAPEEASEISNIILNDEKYE 581

Query: 561 GLWSATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
                T E  +        Q +    L  R  L++++ +E+   + +       ++    
Sbjct: 582 LHRWDTREVYVRKKDTSIAQFVSETVLSLRKYLITQKIKEL---MDKTQGSSNNQEIIKD 638

Query: 618 ISILHEVH 625
           I     ++
Sbjct: 639 ILDYQSLN 646


>gi|72382111|ref|YP_291466.1| DNA primase [Prochlorococcus marinus str. NATL2A]
 gi|72001961|gb|AAZ57763.1| DNA primase [Prochlorococcus marinus str. NATL2A]
          Length = 675

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 168/669 (25%), Positives = 295/669 (44%), Gaps = 68/669 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ +   + I +++G++V   ++       +Y   CPFHD+  PS      K F
Sbjct: 5   RLHPKTIESVKERVDIVDVVGEHVVLKKKGK-----EYVGICPFHDDSKPSMSVIPGKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           YYCFSC   G+ + FL      SF + V  LA    VP+  ++   +++ K     +  L
Sbjct: 60  YYCFSCGAGGNAIKFLMEFQRQSFSDVVLELAKKYQVPIDTIEGPQQERLKQQLSRRDTL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            R+++ AT +F + L +   +    YL ++R +    +  F+LG+APD+  SL ++    
Sbjct: 120 YRVLKTATGWFRNQLNSPCGENALNYLKNKRNLSDGTLINFELGFAPDNWDSLLKYFVDI 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +  S E +  AGL++        YDRFRNR+I PI   + +VI FGGR+L   E  KYLN
Sbjct: 180 EKVSVEILESAGLIVPRKGGNGFYDRFRNRIIVPIHDRQKRVIGFGGRSLDGSEP-KYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGKNL+ F  +   ++K            + ++VEGY DV++L  +G+ NVV
Sbjct: 239 SPETEIFEKGKNLFGFDKSTLSIRKK----------DYAVVVEGYFDVMALHDSGITNVV 288

Query: 296 SSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352
           +SLGTAL+  Q+ LL +   S +I+L FD D+ G+RAA +AI  V    I G   +  + 
Sbjct: 289 ASLGTALSRNQITLLSRATDSKKILLNFDSDNAGIRAANRAISEVENLAIQGQLDLRVLQ 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+DPD F++    + +E L  +S   +D    +  ++   +  D+  E    L + +
Sbjct: 349 LPSGKDPDEFLKDNSPSEYEALAAKSPLWMDWQIDQSLKDLDLSKSDQFQEAVSSLVSLL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    +R +Y Q +  RL     ++  +     R      R   +           + 
Sbjct: 409 GKLPQTAIRTHYLQKVAQRLSGGQGRFSLQLEEDLRNQISGQRWHGRSKK--------ID 460

Query: 473 KGKLSKKPSLREAALLLTLINHP---AILQEQYQELADIRYDNNELQKLWSFLFSDFVE- 528
           K +        EA +L T I+ P   + ++ + +      +  N  + +WS + +     
Sbjct: 461 KPQEISLRERSEADILFTYIHCPNYRSFIRYELRLRDLDDFAINHHRAIWSTISNIEENM 520

Query: 529 ---------QKYFLPEEIHQ--RLCERGFGELLKQLDRQVRDAGLWSATTE---ANIVDV 574
                     ++     I     L ++     L   +  +          E   A + D 
Sbjct: 521 FGPEIVEKINRFNDSNNILADVDLIKKLLDNFLSSDNEHLPKLTPLLDVNELRLATLNDP 580

Query: 575 RQGYQQALALYKRFRLLSR-----------QKEEIEKQIAQV------TAKGEAEKTAIL 617
               + ALA  ++ + L R           + + +E  IA +           ++    +
Sbjct: 581 ESLIRGALAALEKQKSLKRCRHLIDAWSSQRLQTLENCIASLIVQEKSEPSDSSDMEQRV 640

Query: 618 ISILHEVHI 626
           IS+  +++ 
Sbjct: 641 ISMFEDLNN 649


>gi|167765290|ref|ZP_02437403.1| hypothetical protein BACSTE_03678 [Bacteroides stercoris ATCC
           43183]
 gi|167696918|gb|EDS13497.1| hypothetical protein BACSTE_03678 [Bacteroides stercoris ATCC
           43183]
          Length = 697

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 160/699 (22%), Positives = 294/699 (42%), Gaps = 96/699 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++  +V   +R  N     Y   CPFHD+KTPSF+ + +KG  
Sbjct: 2   IDQPTIDRILDAAQIVDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPAKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+      S+ E+++ LA   G+ +   +   E+K  +  +  L  +
Sbjct: 57  KCFACGKGGNVVHFIMEHEQMSYPEALKYLAKKYGIEVKERELSNEEKLVQSERESLFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A D+F + L N  D R     Y   RG     IE F+LGY  +S  ++ E   +KG+
Sbjct: 117 NQFARDYFQNILHNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHNAMAEEALKKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 177 KKEFLVKTGLCYET-DDHQLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESAIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+RL+ + +  + + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 286 ASSGTALTPGQIRLIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F++ I E                +   P +RAEL  +L   I+ I
Sbjct: 343 GDDPDSFARKHNSTEFQQFIQEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKY------ITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
            +  +R  Y +     L+   +          E     R  +     R+    ++     
Sbjct: 403 PEAIVRDVYIKECAQLLRVEDKLLVSEVAKRREMQAEKRAEQAERERRNAGRQAESTQNV 462

Query: 470 S------------------------------------------LVKGKLSKKPSLREAAL 487
           +                                            +GK  ++    E  +
Sbjct: 463 TGAESSTPAAPTTADATPTAAGEVPGHNADAPFPPEDSYISFIPQEGKEGQEFYKYERLI 522

Query: 488 LLTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVE 528
           L  ++ +                   +++    +L   ++ + N   +++ +   +   +
Sbjct: 523 LQMIVRYGEKVMCNVTNEEGQEIPVSVIEYVVSDLKQDELSFHNPLHRQILTEAAAHIHD 582

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ--QALALYK 586
             +           +    +L  +L         + + ++  + D  + Y+   AL +  
Sbjct: 583 AGFTAERYFLAY-PDPAISKLSVELISNRYQLSKYHSKSQKIVTDEERLYELVPALMINF 641

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           ++ ++S + + +   +       + EK   ++    E+ 
Sbjct: 642 KYAIVSEELKHMMSALQDPAIANDEEKCNAIMKRYSEMR 680


>gi|319745369|gb|EFV97680.1| DNA primase [Streptococcus agalactiae ATCC 13813]
          Length = 629

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 153/634 (24%), Positives = 274/634 (43%), Gaps = 48/634 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + + F
Sbjct: 38  AIDKEKISEIKNSVNIVDVIGEVVGLTKTGRN-----HLGLCPFHKEKTPSFNVIEDRQF 92

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRL 120
           ++CF C   GD   F+      SF++SVQ LA  +G+PL      ++ KK K    L+ +
Sbjct: 93  FHCFGCGRSGDVFKFVEDYQHISFLDSVQVLAERSGIPLDTNFKGQVPKKPKANQSLLDI 152

Query: 121 IEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             VA+ F+H  L      +R   YL ERG+    I+ F++G +P  +  L   L  K F 
Sbjct: 153 HRVASGFYHAYLMTTNDGERARQYLAERGVTEDLIKHFQIGLSPGGQDFLYRRLA-KEFD 211

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYLN 235
           E+ ++ +GL    +NS   YD F NR++FP+ +  G+VIAF GR  ++ +      KY N
Sbjct: 212 EKTLMSSGLFNYSENSNQFYDSFNNRIMFPLTNDIGEVIAFSGRVWTQEDIDRKQAKYKN 271

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   + K          +  + L+EG+MDV++  +AG++NVV
Sbjct: 272 SRATPIFNKSYELYHLDKARAVINK----------AHEVYLMEGFMDVIAAYRAGIENVV 321

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   +R L + + ++VL +DGD  G  A  K+++L+         V+ V +  
Sbjct: 322 ASMGTALTNEHVRHLKRFTKKVVLTYDGDRAGQNAIDKSLELL-----SDMTVDIVRIPN 376

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F++      F++L+ +        +    +  + +           +   I   
Sbjct: 377 KMDPDEFLQANSAEDFKQLLEKGRISNTEFYIHYLKPENTDNLQSEIAYVEKIAKLIAKS 436

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                +  Y   + + L       + +     R   ++ +       +   +Q  L +  
Sbjct: 437 PSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHHRSQQQASSSVQTSATVQ--LPQTG 494

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                +  E  L   L+NHP +L E      +  +D  E+Q L+  L             
Sbjct: 495 KLSAITKTEMQLFHRLLNHPYLLNEFRNR-DNFYFDTTEIQVLYELLKESGE-------- 545

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                +      +   +++R            E +I ++ +  ++A     + R L +Q 
Sbjct: 546 -----ITSYDLSQESDKVNRTYYMILEEQLPVEISIGEI-EAVEKARDRLLKERDLRKQ- 598

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
               + I Q + +G+ E     +  L      + 
Sbjct: 599 ---SQLIRQSSNQGDQEGALAALENLIAQKRNME 629


>gi|332292517|ref|YP_004431126.1| DNA primase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170603|gb|AEE19858.1| DNA primase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 658

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 160/666 (24%), Positives = 267/666 (40%), Gaps = 64/666 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I  +     +  +IG +V   +  +N     +    PF DE+TPSF  +  K  +
Sbjct: 2   ISKETIDKVFETARVEEVIGDFVVLKKSGSN-----FKGLSPFSDERTPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
             FS    G  +SFL      S+ E+++ LA    + +   +   E+KE    +  +  +
Sbjct: 57  KDFSTGKGGSAVSFLMEHEHFSYPEAIKYLAKKYNIEIEETERTDEQKEAANERESMYLV 116

Query: 121 IEVATDFFHH-SLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A D+FH   L + + K +   Y  ERG  +  IE F+LGY PD          ++G+
Sbjct: 117 SEYARDYFHKTMLNSEQGKAIGLSYFKERGFTAATIEKFELGYNPDQWDVFTSEAIRQGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
             + + + GL I        +DRF+ R++FPI S  G+V+ FGGR L   +   KYLNSP
Sbjct: 177 KLDYLEKTGLSIV--KEEKQFDRFKGRVMFPIHSMSGRVLGFGGRILDSSKKAAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  + A   + K               LVEGY DV+ + Q+G++NVVSS
Sbjct: 235 ESDIYHKSKVLYGIYYAKQSIAK----------EDNCYLVEGYTDVIQMFQSGIENVVSS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ +L+  I + FDGD  G RAA + IDL    L  G  V       GE
Sbjct: 285 SGTALTPEQIRLVNRLTKNITVLFDGDAAGQRAALRGIDL---ILEQGMNVKVCSFPEGE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R + K        E+               +   P ++A+    +   I+ I D
Sbjct: 342 DPDSFSRKHSKEEIVAFFDENAKDFIQYKANLLVKEAAGDPIKKADTVRDMVESISKIPD 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              +  Y Q     ++          +   +  KK    +D+   S      S+V  ++ 
Sbjct: 402 AIKQEIYVQECARIMEVSETVLYNTLAQILKKDKKETVKQDRGNQSPPPEYMSVVPDEMP 461

Query: 478 KKPSL------REAALLLTLINHPAILQEQYQEL-------------------------- 505
                       E  L+ +L+ +  + ++    +                          
Sbjct: 462 NAVEKVNVLYELERKLIESLLLYGQVEEDFEDLVLKENEDGSLELEPIIHKARVFEKIYL 521

Query: 506 ----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
                ++ + N+  + L+  + +       F  +     L      E+   +    +   
Sbjct: 522 DLQDDEVEFTNDLFKVLYGKIVAQMHLDNNFQVQNFINELAPEEASEISNIILNDEKYEL 581

Query: 562 LWSATTEANIVDVRQGYQQALA---LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
               T E  +        Q +    L  R  L++ + +E+  Q    T   E  K  +  
Sbjct: 582 HRWDTREVYVRKKDTSVGQFVTETVLSLRKYLITEKIKELMNQTKDSTDNKEIIKDILDY 641

Query: 619 SILHEV 624
             L+ +
Sbjct: 642 QSLNTL 647


>gi|326693498|ref|ZP_08230503.1| DNA primase DnaG [Leuconostoc argentinum KCTC 3773]
          Length = 620

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 140/644 (21%), Positives = 251/644 (38%), Gaps = 48/644 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI ++   + I ++IG+Y    +R        +   CPFHD++ PS    ++K  
Sbjct: 4   RIPDAFIDEVRKKVNIVDVIGEYTQLVKRGRQ-----WNGSCPFHDDRHPSLFVEENKQV 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           + CFSC   G   SF+    G S+ E+V  LA  A +P+            +     +  
Sbjct: 59  FNCFSCGRSGSVFSFIMEKEGLSYPEAVLSLAEKADMPVDQQLTAQAAHPIDSRTQAIYD 118

Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           L   A   + H L N         Y  D+R +    I+ F +G+APD   ++     +  
Sbjct: 119 LHSAAQRLYQHILLNTTSGETALAYLHDKRQLSDAVIKQFGIGFAPD--DNVLLQYAKDQ 176

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
                I++A  L   ++     DRF  R+++PI+++RGQV+ F GR L+   ++KY+NSP
Sbjct: 177 NIAPDILQASELFITNDQGVMRDRFAGRIVWPIKTARGQVVGFSGRALASDNTIKYMNSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+  F KGK LYNF  A N ++           ++  ++ EG+MDV+S   AG    V++
Sbjct: 237 ESPFFTKGKILYNFDRAKNQMR----------QTNTALIFEGFMDVISADMAGKTMGVAT 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALT   ++ L +++ RI+L +DGD+ G +AA +AIDL+  H      +  V L    
Sbjct: 287 MGTALTPEHVQQLARVAQRILLVYDGDEAGQKAAKRAIDLISTHAQQ-VEIGVVHLPDQL 345

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD      G  A ++ + +++                 +   +    +           
Sbjct: 346 DPDDLRIQRGTAALQQALEQNIQTPVEFLVNAARTGKNLSNQVQYLAFLQEVMQTLQQAT 405

Query: 418 QKLRYYYSQAIRDRLQQL-------------FQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
              +      I +                    +     +         A       P  
Sbjct: 406 PVEQDLQLTKIANEFGTSKQALQAQLQQTLAQNQARPAATKSYSKRAPKAYTDQMAPPPA 465

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
               S    G+   K    E ALL+ +I  P +L +         + + + Q L      
Sbjct: 466 APADSEPRVGQRLTKVEQAERALLMAMIKSPQVLAQVKAT-TGFAFVHPDYQLLMMLAAI 524

Query: 525 DFVEQKY-FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
              +    F   +    + +    + +  +DR   D  +             +  +  L 
Sbjct: 525 YQGQHPEPFDLAQFMDFIQKPALNQKIMAIDRAYGDLTIEH-----------EAIRDYLQ 573

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +      +  + +E+++ I     + +  K   L++ L  +  Q
Sbjct: 574 IIMEEAPIEARVQELQQLINVAKQQHDDTKLLQLMTELINLKKQ 617


>gi|315223010|ref|ZP_07864889.1| DNA primase [Streptococcus anginosus F0211]
 gi|315187960|gb|EFU21696.1| DNA primase [Streptococcus anginosus F0211]
          Length = 599

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 149/634 (23%), Positives = 264/634 (41%), Gaps = 51/634 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I D+   + I  +IG+ V   +   N     Y   CPFH EKTPSF+  + K FY
Sbjct: 10  IDKEIISDIKNSVNIVEIIGEVVALTKAGRN-----YLGLCPFHGEKTPSFNVVEEKQFY 64

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRL 120
           +CF C   GD   F+    G SF+++VQ +A  AG PL +   + E          L  +
Sbjct: 65  HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGFPLEIEHSRKELLTHTHPHQALYDI 124

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL ERG+    I+ F++G AP+    L + +  K   
Sbjct: 125 HAEAARFYHAVLMTTKIGEEARSYLYERGLTDEVIKHFQIGLAPNENNYLYKSVSGKFDE 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES----VKYLN 235
           +  +      +  +N    YD F+NR++FP+ + RGQVIAF GR     +      KY N
Sbjct: 185 QVIMNSGLFNLADNNLV--YDAFQNRIMFPLTNDRGQVIAFSGRIWQASDIDQKVAKYKN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T +F+K   LY+   A   ++K          S  I L+EG+MDV++  +AG++N V
Sbjct: 243 SRSTPIFNKSYELYHLDKAKATIKK----------SHEIYLMEGFMDVIAAYRAGIENAV 292

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT   +  L K + +I+L +DGD  G  A  KA++ +         V  V +  
Sbjct: 293 ASMGTALTHEHVEHLRKFAKKIILTYDGDKAGQAATAKALNELH-----NLSVEIVRIPD 347

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD FI+       + L+ ++            +  +      + E    +   I  +
Sbjct: 348 NMDPDEFIKKNSADDLQNLLTKTRISDIEFLLNYLKPDNIENLQAQIEFVEQMSPLIAQV 407

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +    +  Y   + + L     + + +     R   +  + +       RL    +   +
Sbjct: 408 QSITAQNSYIYMLAELLPDFDYQQVEQAVNNHRLVNRREQQQQSHQQVSRL---DIPVTR 464

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E+ LL  +I++P IL +  +   D  +   ELQ L+  L             
Sbjct: 465 QVSRLIKAESHLLQRMIDNPVILNDY-RLRKDFHFVTVELQTLYDIL------------- 510

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           + +  +  +   E    + +        +   E +  ++ +  Q      +   LL ++ 
Sbjct: 511 KTNGEVTPQDLSEQNDSVQQAWYRVLEENLPEEVSEQELIEVEQT-----RDKELLRKEN 565

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + I K++ + +  G+A+     +        ++ 
Sbjct: 566 QLIGKKVREASHSGDADTALEELERFIAQKRRME 599


>gi|304439789|ref|ZP_07399687.1| DNA primase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371776|gb|EFM25384.1| DNA primase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 598

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 159/634 (25%), Positives = 273/634 (43%), Gaps = 38/634 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M      + ++     I ++I +YVD  ++ +N     Y   CPFH EKTPSF  ++SK 
Sbjct: 1   MRIDDRVLDEIRQKSSIVDVISEYVDLKKKGSN-----YMGLCPFHSEKTPSFSVSESKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            + CF C   GD ++F+  +   SFIE+V+ LA    + L       +KK    T     
Sbjct: 56  IFKCFGCSAGGDVITFIMKIEHLSFIEAVKFLAEKYNIELSEE-KVDKKKLDKITRCYEA 114

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             +A  F+  +LKN   K    YL+ R I    I  + LG+A DS  +L  +++  G++E
Sbjct: 115 NVLAAKFYMQNLKNN--KMALEYLERREIGPEVITAYGLGFAEDSWNNLLNYMKSNGYNE 172

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+++E  L+    N    +DRFRNR++FPI   R +VIAFGGR +      KYLNS +T+
Sbjct: 173 EELVEYNLVSKSQNG-KYFDRFRNRIMFPIIDLRRRVIAFGGRVM-DDSMPKYLNSTDTV 230

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG+NLYN     N               S IILVEGYMDV+SL ++G++  V+SLGT
Sbjct: 231 VFHKGRNLYNQNIVKNL------------DRSRIILVEGYMDVISLYKSGIKYSVASLGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q  L+ K    + +C+DGD+ G+RA  +AI +       G     + L  G DPD
Sbjct: 279 ALTPEQAELVKKFGKDVYICYDGDEAGIRATKRAIGI---LRSVGVNPKIIRLPEGLDPD 335

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++ YG   FE  + E+    + L +   +N   +T D      +     +  IK+   
Sbjct: 336 EYLKKYGAFNFEVTLSEATNYFEYLIEDLKKNFDISTTDGMTGFLVESAKLVATIKNPIE 395

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R      +    +      I   +   + ++       +         +  V   +    
Sbjct: 396 RDLEIDRLSKDYKVTRSAIINYINRNKQNYEDKRERNREYNLKNSRQTTKPVAKNIQNGF 455

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              +  L+         ++   + L    Y      ++   L   + +      E++ + 
Sbjct: 456 KKSKYQLMAYAAADENYIKIIKKYLNLEEYLEKNEVEVIKSLEEAYEKSAKDPLEDLKES 515

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                      ++             +      + +   + +   K    L     ++EK
Sbjct: 516 ----------GKITETSYRIIKEIEVSHEYPDKIIEELAKTIIKSKLQEDLKSNLSKLEK 565

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH-QIES 633
            + +       EK   L  I+ +++ ++  ++++
Sbjct: 566 -LDRNEP-NYKEKLKELSEIIIDLNQKLKGEMKN 597


>gi|58038784|ref|YP_190748.1| DNA primase [Gluconobacter oxydans 621H]
 gi|58001198|gb|AAW60092.1| DNA primase [Gluconobacter oxydans 621H]
          Length = 615

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 179/619 (28%), Positives = 280/619 (45%), Gaps = 42/619 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M     F+ +L    P+ +LIG+     R   N     +  CCPFH EKTPSF+  D   
Sbjct: 1   MAIDAAFLDELRNRTPLPSLIGRRNKLVRSGRN-----WKTCCPFHGEKTPSFYIYDDH- 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++CF C V GD +S++    G SF E+V++LA+ AG+ +P  DP+ + + +    L  +
Sbjct: 55  -FHCFGCGVHGDAISYVMQSEGRSFPEAVEQLASEAGLEVPKADPRTQARAREAQSLGDV 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + +  + +   L     +    YL  RG+    IE F LG++ D R  L + LR  G + 
Sbjct: 114 LNLVQESYRRRLYRPEGREGLAYLRGRGLTEETIERFGLGWSGDGRQ-LLDELRPHGVTV 172

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E +I AG++   +  A   + F NR+ FPIR  RG++++FG RTL      KYLN PET 
Sbjct: 173 EMLIRAGVMRVDEQGAPKGELFFNRVTFPIRDRRGRMMSFGARTL-GDGQPKYLNGPETA 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K + L+N   A   + +           + +++VEGYMDV+++ QAG    V+ LGT
Sbjct: 232 LFSKRRTLFNLDLAREAVHR----------GADLVVVEGYMDVIAMDQAGFGGAVAPLGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+ E QL LLW++SP  +LC DGD  G RAA +  ++ L  L P   + F  L   +DPD
Sbjct: 282 AMGEEQLELLWRMSPSPILCLDGDAAGARAALRVCEVSLPLLSPERTIRFCRLDPKDDPD 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S IR  G  A ++ +  +  + + L+   T       PD+RA L   L      I D+ L
Sbjct: 342 SLIRSRGPRAMQEALSGATSMAEELFGLLTAGLVDPGPDQRAALREKLVALSRLIPDKAL 401

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y   + D     F++  T     G     + +        +      L         
Sbjct: 402 ASEYRSTLLDMFFARFRRKKTFQRKGGESLPLSTQAPGAMRDVESGNLERLN-------- 453

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL---PEEI 537
                 +   L++HP IL E  Q  + +   + EL +L S L     +++       E  
Sbjct: 454 -----IMTAMLLHHPDILPEVEQAYSGLHLPS-ELDRLRSALLDWSCQEEERDGLTEESC 507

Query: 538 HQRLCERGFGELLKQLD--RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
              L E G  +L  ++      R  G      E   VDV + +    AL          +
Sbjct: 508 MSWLEEHGLADLAGRVKGGPLPRSVGDGKVKDEILKVDVIESWWHFYALVNFQTF----E 563

Query: 596 EEIEKQIAQVTAKGEAEKT 614
             +E+ + +   +G+ E  
Sbjct: 564 RTLEEDVTRAVIEGDMEPF 582


>gi|303233670|ref|ZP_07320324.1| DNA primase [Finegoldia magna BVS033A4]
 gi|302495104|gb|EFL54856.1| DNA primase [Finegoldia magna BVS033A4]
          Length = 599

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 152/632 (24%), Positives = 279/632 (44%), Gaps = 46/632 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+D I ++     I ++IG YV+  R  +N     Y   CPFH+EKTPSF  + SKG +
Sbjct: 8   IPQDKIDEIKSVADIVSVIGDYVELKRSGSN-----YIGLCPFHNEKTPSFSVSPSKGIF 62

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C V GD +SF+    G S+ E+++ LA   G+ L   +   ++K + +  L  +  
Sbjct: 63  HCFGCGVGGDVISFIMQKEGLSYPEAIKFLADKLGI-LVETNEVNKEKYEHRKKLFAINN 121

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  FF+ +L      + +    +         +       D + SL  HL +KG+ ++ 
Sbjct: 122 EAKLFFYKNLLINDVPKEYIKKRDLTNSMINKFIIGYA---DGKNSLYRHLLKKGYQKDD 178

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           IIE GL    +     +D+FRNRL+FPI   RG +I FGGRTL      KY+NSP+++ +
Sbjct: 179 IIEVGLANQDERGNI-FDKFRNRLMFPIIDIRGNIIGFGGRTL-ADAKAKYMNSPQSLAY 236

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K KN+Y      N  +              IILVEGYMDV+SL   G    ++SLGT+L
Sbjct: 237 DKSKNVYGVSNLKNSTK-----------VGKIILVEGYMDVISLTNYGFDFAIASLGTSL 285

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q +L+ +    I +C+DGD  G  A  +AI +           N +++    DPD +
Sbjct: 286 THDQAKLIKRYCKNIYICYDGDSAGQNATSRAIQV---FKEIDISPNIIVIPDNLDPDDY 342

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I+ YG  +F KLI  ++  +   +K+  +    N   E+ +L   L   ++ +    +R 
Sbjct: 343 IKKYGNESFNKLIDNAMDSIIYEYKKILKKYDINDVKEKIQLIDDLTTLLSKLDRAVIRD 402

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y +   + LQ       T+ S      K N     +      ++  +L +   +     
Sbjct: 403 EYIKKFAEDLQIDDNSLRTDVSDKLSVAKPNISVNREVTEYSDVLDINLQEKITAI---- 458

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
               ++     +  I +   ++++  + D         F  + +++      +E      
Sbjct: 459 ---EIMTIACFYRDIYETIKEDVSKFKTDIIYYNNFMEFADNYYLKNNEKEIDE------ 509

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                 +       ++           +   +       + L  +  L++++K++I++Q+
Sbjct: 510 ----NSVRDYFKNDIQMDRTIDYLYNTSRNSININSIDRVILEIKKYLITQEKDKIKQQL 565

Query: 603 AQVTAK--GEA--EKTAILISILHEVHIQIHQ 630
             + +    +   +K   +++ + E++ Q+ +
Sbjct: 566 DLMQSVDFNDKINQKYKEILNKILEINRQLKE 597


>gi|322373397|ref|ZP_08047933.1| DNA primase [Streptococcus sp. C150]
 gi|321278439|gb|EFX55508.1| DNA primase [Streptococcus sp. C150]
          Length = 603

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 150/644 (23%), Positives = 257/644 (39%), Gaps = 56/644 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I+D+     I ++IG+ V  +R   N     Y   CPFH EKTPSF+  + + 
Sbjct: 1   MAIDKALIEDIKSSTNIVDVIGEVVSLNRAGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE-KIQTDLIR 119
           FY+CF C   GD   FL      SF ESV+ LA   G+ + +  P+  +++         
Sbjct: 56  FYHCFGCGKSGDVFKFLEEYRQISFQESVKVLADRLGIAVTIDAPRQAQQQHSPNQAFYD 115

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L E A  F+H  L      +    YL ERG+    ++ F++G +PD    L + + +K  
Sbjct: 116 LHEDALKFYHAVLMTTKIGETARAYLYERGMTDDLLKAFQIGLSPDEPDYLYQSVSKKYD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234
            E              S   +D F+NR++FP+++  G+ I F GR  +K        KY 
Sbjct: 176 EEVLTESGLFN--LSESNRLFDTFKNRIMFPLKNEFGKTIGFSGRVWTKEAIEQGQAKYK 233

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+  T +F+K   LY+   A   +QK          +  + L+EG+MDV++  +AG  N 
Sbjct: 234 NTRATRIFNKSYELYHLDQAKPVIQK----------THEVYLMEGFMDVIAAYRAGQVNA 283

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +  L KL+ +IVL +DGD  G  A  K+++L+    +       V + 
Sbjct: 284 VASMGTALTPEHVNRLRKLTKKIVLTYDGDKAGQNAIAKSLELLSDFQVD-----IVKIP 338

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD +++   + A  KL+VES       W  + +  + +           +   I  
Sbjct: 339 DNMDPDEYLQKTSEEALGKLLVESRISDVEFWIGQLKPANVDNLQAEIAYVEQIAKIIAK 398

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---- 470
                 +  Y   + D L       + +     R   +N +            +SS    
Sbjct: 399 SPSVTAQNSYISKVADLLPDFDFFQVEQAVNNERLTLRNQQTAQLSAAGNSSYESSASGF 458

Query: 471 -----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                L            E  L   ++NHP IL +      D  +   EL++L+  L  D
Sbjct: 459 RGTVKLPSTPKITGLRRAENQLFHRMLNHPMILNDYRMR-DDFFFQTAELEELYQLLKQD 517

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
                         ++       L +++              E ++ +V+   ++     
Sbjct: 518 G-------------QIDTVALSVLPQEVQTAYYQVLEEILPPETSLEEVQAIEERRNHFL 564

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +      +      KQI + +  G+ +     + +L      + 
Sbjct: 565 RELDFRKQ-----SKQIRESSNHGDVDAAVEALQMLIAQKRDME 603


>gi|222111656|ref|YP_002553920.1| DNA primase [Acidovorax ebreus TPSY]
 gi|221731100|gb|ACM33920.1| DNA primase [Acidovorax ebreus TPSY]
          Length = 658

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 169/677 (24%), Positives = 280/677 (41%), Gaps = 76/677 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + P+ FI++LL  + + +++G+YV   +   N     +   CPFH EK+PSF  + SK F
Sbjct: 7   SIPQSFIQELLARVDVVDVVGRYVQLKKSGAN-----FMGLCPFHGEKSPSFSVSPSKQF 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-------KEKIQ 114
           ++CF C   G+ + FL    G  F E+VQ LA   G+ +P  +    +       + + Q
Sbjct: 62  FHCFGCGKNGNAIGFLMDHAGMGFREAVQDLAQQIGMQVPDDENTSPQDRERAAAQRQKQ 121

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  ++E A D +   L+ +   R   Y   RG+     + + LGYAP+    L     
Sbjct: 122 ATLTDVLEKAGDAWRRHLRES--PRAVQYFKGRGVSGQVAKRYGLGYAPEGWRGLASVF- 178

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
              +    + E+GL+I  D     YDRFR+R++FPIR+ +G+ I FGGR L   +  KYL
Sbjct: 179 -PEYDSPLLEESGLVIVNDEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVL-GDDKPKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKG+ LY  + A N ++             + ++ EGYMDV++L Q G  N 
Sbjct: 237 NSPETPVFHKGRELYGLYEARNAIR----------EHGYALVTEGYMDVVALAQLGFPNA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V++LGTA T   +  L++ +  +V  FDGD  G RAA KA+D  L +      V F+ L 
Sbjct: 287 VATLGTACTPEHVHKLFRFTDTVVFSFDGDAAGRRAARKALDGALPYASDTRSVKFLFLP 346

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPDSF+R YG  AF + + +++PL   L +   E     T + RA +  + +     
Sbjct: 347 AEHDPDSFVRAYGPEAFARHVGDAVPLSRFLLEAAREGCDLGTAEGRAHMLSNARPLWAA 406

Query: 415 IKDQKLRYYYSQAIRDR-------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
           + D  L+      + +        L QL+ +              +      + P  +  
Sbjct: 407 LPDGALKRQLLTELGELGQLPAPDLAQLWAQDSPRPGSAAHPPAHDGAPFGDEPPWGQEP 466

Query: 468 QSSLVKGKLSKKPSLREA--------------------------------ALLLTLINHP 495
                      +P+ R                                       L++H 
Sbjct: 467 PGMEYGSPAGGEPARRWRKGGEWKGGRWRREEQRPPQPPLPRRPLTGRADHAARLLLSHM 526

Query: 496 AILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             L+E   E   +  D       L+ +L     E        + + L       L +++ 
Sbjct: 527 EFLEELSHEDHTLLCDQPAPHGALFVWLEGQLHEHGPQSWAVLREALAGHDCQALAERVM 586

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                     A TE +  ++R   +  L        +  Q+  +    +Q  A    E+ 
Sbjct: 587 TGS------HAQTEGDETELRAELRGLLNRML-IEAIKLQQNALIAAASQDPAA--IERY 637

Query: 615 AILISILHEVHIQIHQI 631
             L      +   + ++
Sbjct: 638 RQLQERRRALEEGLTKM 654


>gi|270158973|ref|ZP_06187629.1| DNA primase [Legionella longbeachae D-4968]
 gi|289166184|ref|YP_003456322.1| DNA primase [Legionella longbeachae NSW150]
 gi|269987312|gb|EEZ93567.1| DNA primase [Legionella longbeachae D-4968]
 gi|288859357|emb|CBJ13293.1| DNA primase [Legionella longbeachae NSW150]
          Length = 572

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 152/609 (24%), Positives = 269/609 (44%), Gaps = 51/609 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    +  LI  YV   +R        + ACCPFH+EK+PSF+    K FY
Sbjct: 5   IPQPFIDDLLQRTDLVELIDSYVPLKKRGN-----SHVACCPFHNEKSPSFNVVAKKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G+ +SF+       F+++++ LA   G+ +P    K  +KE    DL +L+ 
Sbjct: 60  HCFGCGASGNAISFVMKYFNQGFVDAIETLATRIGLTIPRE--KQTEKENTSRDLYKLLS 117

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
             +  +   LK+   +    YL ERG+     ++++LG+A +  ++L    +    ++ +
Sbjct: 118 AVSLHYRKKLKHE-GQPAINYLRERGLSGEVAKLYQLGFATEGWHNL---EKAFPRNQRE 173

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +I  G+LI        YDR+RNR++FPI    G++I FGGR L   +  KYLNSPET++F
Sbjct: 174 LIATGMLIKN-EDGKIYDRYRNRIMFPIHDRHGRIIGFGGRVLDSEQKPKYLNSPETVIF 232

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K + LY                 ++ S   II+VEGYMDV++L Q  + NVV++LGTA 
Sbjct: 233 QKSRELYGLHQ----------VLSQQKSIDSIIIVEGYMDVIALAQHEIINVVATLGTAT 282

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           + Y ++LL K +  ++ CFDGD+ G +AA++ ++  L HL  G  V+F+ L  G DPDS 
Sbjct: 283 STYHIQLLSKHAKSLIFCFDGDNAGKQAAWRGLESSLPHLNLGLDVSFMFLPDGHDPDSL 342

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +R  GK  F   I +++PL    +   +++ +   P  + +L    K  +  + +   + 
Sbjct: 343 VRKEGKEHFLNQIKQAIPLNRFFFDSLSKDLNLLRPAGKTQLINLAKPFLQKMSEGSYKQ 402

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                +         +     +   +           + P                    
Sbjct: 403 LLIGDLARLTHIEPHRLNQLITDQTKNPSPEPMMTLTRTPM------------------- 443

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
                +  L+ HP I  +   ++    +D  E + L   L +            + +   
Sbjct: 444 --RIAVALLLQHPEIYTQSMLQMKPELFDAQEHEILLK-LLNQLASNPKANTATLIEAWR 500

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTE-------ANIVDVRQGYQQALALYKRFRLLSRQK 595
              + + + +L              E           +     +Q +   ++  L   +K
Sbjct: 501 NHPYFDFINKLAAWEHQVPEPELVKEFIDIMFFLQKQNRELTIRQLINKSRQHGLNEAEK 560

Query: 596 EEIEKQIAQ 604
            ++++ + +
Sbjct: 561 FKLQEMLKE 569


>gi|257876549|ref|ZP_05656202.1| DNA primase [Enterococcus casseliflavus EC20]
 gi|257810715|gb|EEV39535.1| DNA primase [Enterococcus casseliflavus EC20]
          Length = 612

 Score =  328 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 152/641 (23%), Positives = 280/641 (43%), Gaps = 41/641 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+  I D+     I +++GQYV   +   N     Y+  CPFH+EK+PSF   + K  
Sbjct: 3   RIPQTVIDDIRERSNIVDIVGQYVQLKKSGKN-----YFGLCPFHNEKSPSFSVAEDKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   G+   FL  L G SF E+V ++A +  +PL         I +     + LI
Sbjct: 58  FHCFGCGRGGNVYGFLQELEGISFPEAVVKVAEMNDIPLDPQYQQSEGINEATSQTSQLI 117

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A + +HH L   A  +    YL +RG+    IE F +G+AP+ R  L +    + 
Sbjct: 118 ALHEKAAEVYHHMLVNTAAGQEALDYLLDRGLTMALIEEFNIGFAPNERSFLEKVFLNEK 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESVK 232
              E   + GL +  ++  +  DRF  R++FPIR+ +G+ I F GR L+       +  K
Sbjct: 178 AKAEFFPDTGLFVQRNDG-SLADRFYQRIMFPIRNPQGKTIGFSGRWLASEKVGDQDQPK 236

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPETILF+K + L+NF  A   ++K             + L EG+MDV++  QAG++
Sbjct: 237 YLNSPETILFNKREVLFNFDKARRAMRKD----------GQVYLFEGFMDVIAAWQAGIE 286

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           N ++S+GT+LT  Q+  + +++  ++LC+DGD  G+ A  + IDL+        +++ V 
Sbjct: 287 NGIASMGTSLTNQQIAHIERVAQEVILCYDGDSAGVEATNRGIDLL--QNNSRLKLSVVR 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +    DPD ++R YG  AF KL V     +          NR+     E+ +    +   
Sbjct: 345 VPERMDPDDYLRKYGTEAFYKLAVHGKETVFAFKMDYHRANRNLANEKEQLDYVQVVLKE 404

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  +     +  Y   +        +    +     +  +           +   M  + 
Sbjct: 405 LQRVDSLLEQDRYLTQLSTEFNLSRETLQQQLKQNRQEQQPRQDAPPPAPTTNNPMVFTP 464

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
              +  K    +   LLL  + H + L  +++  + I + ++  Q+L+    +    +++
Sbjct: 465 PTRQQPKTQVEKAQELLLYRLFHDSTLNHRFRA-SGISFIHDRYQQLYLLFDAYMETEEH 523

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
           F+  +    L E    +++  +                   +  +   Q +    +   +
Sbjct: 524 FVLAKFLDFLKEDSMKKMVIDIADL------------KASEEGTEQEFQDILQVFQKSGI 571

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           + +  +   Q  +   KG  +    L   + ++  ++ Q +
Sbjct: 572 AEEINQKRIQQQEARQKGNQQLELELAIEIIDLTKRLKQAK 612


>gi|325571156|ref|ZP_08146728.1| DNA primase [Enterococcus casseliflavus ATCC 12755]
 gi|325156241|gb|EGC68427.1| DNA primase [Enterococcus casseliflavus ATCC 12755]
          Length = 611

 Score =  328 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 148/641 (23%), Positives = 276/641 (43%), Gaps = 42/641 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+  I D+     I +++GQYV   +   N     Y+  CPFH+EK+PSF   + K  
Sbjct: 3   RIPQTIIDDIRERSNIVDIVGQYVQLKKSGKN-----YFGLCPFHNEKSPSFSVAEDKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   G+   FL  L G SF E+V ++A +  +PL         I +     + LI
Sbjct: 58  FHCFGCGRGGNVYGFLQELEGISFPEAVVKVAEMNDIPLDPQYQQSEGINEATSQTSQLI 117

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A + +HH L   A  +    YL +RG+    IE F +G+AP+ R  L +    + 
Sbjct: 118 ALHEKAAEVYHHMLVNTAAGQEALDYLLDRGLTMALIEEFNIGFAPNERSFLEKVFLNEQ 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESVK 232
              E   + GL +  ++  +  DRF  R++FPIR+ +G+ I F GR L+       +  K
Sbjct: 178 AKAEFFPDTGLFVQRNDG-SLADRFYQRIMFPIRNPQGKTIGFSGRWLASEKVGDQDQPK 236

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPETILF+K + L+NF  A   ++K             + L EG+MDV+S  QAG++
Sbjct: 237 YLNSPETILFNKREVLFNFDKARRAMRKD----------GQVYLFEGFMDVISAWQAGIE 286

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           N ++S+GT+LT  Q+  + +++  ++LC+DGD  G+ A  + I+L+        +++ V 
Sbjct: 287 NGIASMGTSLTNQQIAHIERVAQEVILCYDGDSAGVEATNRGIELL--QNNSRLKLSVVR 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +    DPD ++R YG  AF KL V     +          NR+     E+ +    + N 
Sbjct: 345 VPERMDPDEYLRKYGTEAFYKLAVHGKETVFAFKMDYHRMNRNLANEKEQLDYVQVVLNE 404

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  +     +  Y   +        +    +     +  +              ++ +  
Sbjct: 405 LQRVDSLLEQDRYLTQLSTEFNLSRETLQQQLKQNRQEQRTMQDVAPPPPTDTPVVFTPP 464

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            + +   +    +  LL  L +   +        + I + ++  Q+L+    +    +++
Sbjct: 465 TRQQPKTQVEKAQELLLYRLFHDSTLNHRFRA--SGISFIHDRYQQLYLLFDAYMETEEH 522

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
           F+  +    L E    +++  +                   +  +   Q +    +   +
Sbjct: 523 FVLAKFLDFLKEDSMKKMVIDIADL------------KASEEGTEQEFQDILQVFQKSGI 570

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           + +  +   Q  +    G  +    L   + ++  ++ Q +
Sbjct: 571 AEEINQKRIQQQEARQIGNQQLELELAIEIIDLTKRLKQAK 611


>gi|329963065|ref|ZP_08300845.1| DNA primase [Bacteroides fluxus YIT 12057]
 gi|328529106|gb|EGF56036.1| DNA primase [Bacteroides fluxus YIT 12057]
          Length = 713

 Score =  328 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 159/704 (22%), Positives = 287/704 (40%), Gaps = 101/704 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I++++  +V   +R  N     Y   CPFHD+KTPSF+ + SKG  
Sbjct: 12  IDQATIDRILDAAQITDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPSKGLC 66

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+      S+ E+++ LA   G+ +   +   E+K  +  +  L  +
Sbjct: 67  KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSNEEKIAQSERESLFIV 126

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + L+N  D R     Y   RG     IE F+LGY  +S  +L +   QKG+
Sbjct: 127 NSFARDYFRNILRNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDALAQEALQKGY 186

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            ++ +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 187 KKDFLLKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLAGATKGVKVKYVN 245

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 246 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 295

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+R++ + +  + + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 296 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 352

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F++ I ++               +   P +RAEL  +L   I+ I
Sbjct: 353 GDDPDSFARKHNATEFQEFIQKNETDFIRFKANLLLEDAGKDPIKRAELISNLVQSISII 412

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ---------------- 459
            +  +R  Y +     L+   +  ++E +       +    R +                
Sbjct: 413 PEAIVRDVYIKECAQLLRVEDKLLVSEVAKRREMQAEKQAERAERERRSANAARANAEAG 472

Query: 460 -----KGPSQRLMQSSLVK----------------------------------GKLSKKP 480
                  P+Q     S                                     GK  ++ 
Sbjct: 473 ITDGGNAPAQVPAGDSQPSGTYPPEAFPPSGFPPEEAVPFPPSDDYVSFIPQDGKEGQEF 532

Query: 481 SLREAALLLTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSF 521
              E  +L  L+ +                   + +    +L   ++ + N   +++ S 
Sbjct: 533 YKYERLILQMLVRYGERVMCKVPNGEGQEIPVTVTEYIINDLKEDELAFHNPLHRQILSE 592

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
                  + +           +    +L  +L                   +        
Sbjct: 593 AAERIHNEGFIAERYFVAH-PDPVISKLSVELISNRYQLRKSQIEQMVTDEERLYELIPR 651

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           L +  ++ ++S + + I   +       +  +   ++   +E+ 
Sbjct: 652 LMINFKYAIVSEELKHIMFALQDPAVINDETQCNSIMKRYNELR 695


>gi|159903246|ref|YP_001550590.1| DNA primase [Prochlorococcus marinus str. MIT 9211]
 gi|159888422|gb|ABX08636.1| CHC2 zinc finger:Toprim domain [Prochlorococcus marinus str. MIT
           9211]
          Length = 679

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 166/669 (24%), Positives = 299/669 (44%), Gaps = 65/669 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ +     I +++G++V   ++       ++   CPFHD+  PS   + +K F
Sbjct: 5   RIHPHTIEAVKERADIVDVVGEHVVLKKKGK-----EFVGICPFHDDSKPSMTVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117
           YYCFSC   G+ + FL      SFI+ V  LA    +P+  ++   +    +K   + +L
Sbjct: 60  YYCFSCGAGGNSIKFLMEFQRESFIDVVLGLARKYQLPIETLEGPQQERLRQKLSRRDNL 119

Query: 118 IRLIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            +++++A  +F   L+++      +Y L++R +D   I+ F+LG+AP++   L  HL   
Sbjct: 120 YKILDLAKGWFQDRLRSSEGALAFNYLLEKRRLDRGIIDQFELGFAPNAWDGLLRHLNHV 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +  S+E +  AGL+I   +    YDRFRNRL+ PI+  +G+VI FGGR+L   +  KYLN
Sbjct: 180 ENISQELLEAAGLIIPRKSGDGFYDRFRNRLMIPIKDRQGRVIGFGGRSLDGTDP-KYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK+L+    A N ++K          +   ++ EGY DV++L  AGV N V
Sbjct: 239 SPETEVFEKGKHLFALDKATNLIRK----------NDKAVVAEGYFDVIALHAAGVTNAV 288

Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352
           +SLGTAL+ +Q+  L + +   RIVL FD D+ G+RAA +AI+ V    + G   +  + 
Sbjct: 289 ASLGTALSSHQVTQLCRCTDSKRIVLNFDADNAGIRAANRAINEVEHLAMQGQLELRVLH 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  G+DPD +++      ++ L+ ++   +D    +  ++      D    +   L   +
Sbjct: 349 LPSGKDPDEYLQENSVADYKALLDKAPLWIDWQIDQVFKDLDLTKADHFQLVVSGLVQLL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    LR YY Q + +RL     +   +     R   K  R   Q         + L 
Sbjct: 409 GKLPPSALRTYYLQKVSERLSGGQARVALQLEDDLRKQVKGQRWHGQ--------STRLE 460

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVE- 528
           K   +      EA +L   ++ P+      +EL       +  +  + LWS +       
Sbjct: 461 KPGEASLRERNEAEILRLYLHCPSQRANIRRELRQRELEDFALHHHRLLWSSISDIEESN 520

Query: 529 ---------------QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
                                 E+ + L ++   +    L  +            A +  
Sbjct: 521 LGMTLLESICRGDAPGDELSLIELPRLLLDQFTADNNDLLSSRFTPLLELGEVQMAAMKT 580

Query: 574 VRQGYQQALALYKRFRLLSR-----------QKEEIEKQIAQV--TAKGEAEKTAILISI 620
                +  LA+ +R + L R           + E +E  IA +    + + + +  + + 
Sbjct: 581 PIPYLRGTLAVLERHKSLRRCRHLIEAWSGQRLETLETCIAALLEQEQNQPDLSFEMEAR 640

Query: 621 LHEVHIQIH 629
           + E+  +++
Sbjct: 641 IDEMFNELN 649


>gi|297588503|ref|ZP_06947146.1| DNA primase [Finegoldia magna ATCC 53516]
 gi|297573876|gb|EFH92597.1| DNA primase [Finegoldia magna ATCC 53516]
          Length = 598

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 159/634 (25%), Positives = 287/634 (45%), Gaps = 43/634 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+D I ++     I ++IG YV+  R  +N     Y   CPFH+EKTPSF  + SKG +
Sbjct: 4   IPQDKIDEIKSVADIVSVIGDYVELKRAGSN-----YVGLCPFHNEKTPSFSVSPSKGIF 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C V GD +SF+    G S+ E+++ LA   G+ L   +   ++K + +  L  +  
Sbjct: 59  HCFGCGVGGDVISFIMQKEGLSYPEAIKFLADKLGI-LVETNEVNKEKYEHRKKLFEINN 117

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  F++ +L      +      ++   ++ +    +    D + SL  HL QKG+ ++ 
Sbjct: 118 EAKLFYYKNLLINDIPK---EYIKKRNLNNNLINKFIIGYADGKNSLYRHLLQKGYQKDD 174

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           IIE GL I+ D     YD+FRNRL+FPI   RG VI FGGR L      KYLNSP+++ +
Sbjct: 175 IIEVGL-INQDEKGNVYDKFRNRLMFPIIDIRGNVIGFGGRAL-AEARAKYLNSPQSLAY 232

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K KN+Y      N  +              IILVEGYMDV+SL   G    ++SLGT+L
Sbjct: 233 DKSKNVYGVSNLKNSTK-----------VGKIILVEGYMDVISLTNYGFDYAIASLGTSL 281

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q +L+ +    I +C+DGD  G  A  +AI++           N +++    DPD +
Sbjct: 282 THDQAKLIKRYCKNIYICYDGDSAGQNATSRAIEI---FKEQDISPNIIVIPDNMDPDDY 338

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I+ YG  +F +LI  ++  V   +K+  +    N   E+ +L   L   ++ +  + +R 
Sbjct: 339 IKQYGNESFNRLIDNAMDSVIYEYKKILQKYDINDVKEKIQLIDDLTTLLSKLDREVIRD 398

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y +   D L   +     +     +  K N    +++    +  +    K  ++ +  +
Sbjct: 399 EYIKKFSDDLNIEYVSLKKDVYNKLKETKPNVNFHNERTEDNQNTE----KDSINNQEKI 454

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
               ++     H  I  +  +E +  +   +       F+   + +           ++ 
Sbjct: 455 TAIDIMTIACFHKDIYYDLKEEFSKFKTKISSYNNFMEFVDFYYSKNNE-------NQID 507

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           E+   +  K   +  R        +  +I          + L  +  L++++K+ I+ Q+
Sbjct: 508 EKAARDYFKNDIQMDRTIDYLYQKSRYSININN---IGRVVLEIKKYLMTQEKDNIKSQL 564

Query: 603 AQVTAKGEAE----KTAILISILHEVHIQIHQIE 632
             + +    E    +   +++ + E++ QI + +
Sbjct: 565 DLMQSVEFNEKINKEYNEILNKILEINRQIKEYK 598


>gi|329957254|ref|ZP_08297774.1| DNA primase [Bacteroides clarus YIT 12056]
 gi|328522967|gb|EGF50070.1| DNA primase [Bacteroides clarus YIT 12056]
          Length = 696

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 156/697 (22%), Positives = 289/697 (41%), Gaps = 93/697 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++  +V   +R  N     Y   CPFHD+KTPSF+ + +KG  
Sbjct: 2   IDQPTIDRILDAAQIYDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPAKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+      S+ E+++ LA   G+ +   +   E+K  +  +  L  +
Sbjct: 57  KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSNEEKLAQSERESLFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A D+F + L+N  D R     Y   RG     IE F+LGY  +S  ++ +   +KG+
Sbjct: 117 NQFARDYFQNILRNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDAMAQEAIKKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +I+ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 177 KKEFLIKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+RL+ + +  + + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 286 ASSGTALTPGQIRLIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F + I E                +   P +RAEL  +L   I+ I
Sbjct: 343 GDDPDSFARKHNSTEFRQFIQEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------------- 460
            +  +R  Y +     L+   +  ++E +       +    + ++               
Sbjct: 403 PEAIVRDVYIKECAQLLRVEDKLLVSEVAKRREMQAEKRAEQTERERRAAARNNMEATAA 462

Query: 461 --------------------------------GPSQRLMQSSLVKGKLSKKPSLREAALL 488
                                            P    +     +GK  ++    E  +L
Sbjct: 463 QVPYTEGDAALATADGTSLPPDMAAEYADSPIPPEDNYVSFIPQEGKEGQEFYKYERLIL 522

Query: 489 LTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQ 529
             ++ +                   +++    +L   ++ + N   +++ +   +   + 
Sbjct: 523 QMIVRYGEKIMCNATNEEGQEVPVSVIEYVINDLKQDELSFHNPLHRQILTEAATHIHDA 582

Query: 530 KYFLPEEIHQRLCERGFGELLKQL-DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            +                  ++ + +R         +       +       AL +  ++
Sbjct: 583 GFTAERYFLAHPETTISKLSVELISNRYQLSKYHSKSQKIVTDEERLYELVPALMINFKY 642

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
            ++S + + +   +       + EK   ++    E+ 
Sbjct: 643 AIVSEELKHMMSALQDPAVANDEEKCNAIMKRYCEMR 679


>gi|322376486|ref|ZP_08050979.1| DNA primase [Streptococcus sp. M334]
 gi|321282293|gb|EFX59300.1| DNA primase [Streptococcus sp. M334]
          Length = 567

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 146/590 (24%), Positives = 246/590 (41%), Gaps = 35/590 (5%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 8   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G  F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 63  CFGCGRSGDVFKFIEEYQGVPFMEAVQILGQRVGIEVEKPLYSEQKPVSPHQALYDMHED 122

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F++G AP  R  L + L  +    E+
Sbjct: 123 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFRIGLAPPERNYLYQRLSGQYRE-EE 181

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240
            +++GL      +    D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T 
Sbjct: 182 FLDSGLFYLS-EANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 240

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K   LY+   A     K          +S I L+EG+MDV++  +AG++N V+S+GT
Sbjct: 241 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 290

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL+   +  L +L+ ++VL +DGD  G  A  KA+D      I    V  V +    DPD
Sbjct: 291 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++  G      L+ ++       +  + +  +      + E    +   I   K    
Sbjct: 346 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSITA 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   + D L       I +     R  ++  R      P+       +   K     
Sbjct: 406 QNSYIHILADSLASFDYAQIEQIVNESRQAQRQNRMEGISKPTPIT----MPVTKQLSAI 461

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              EA LL  ++  P ++   Y+   D  +D  E Q L+  L   +      +  E  + 
Sbjct: 462 MRAEAHLLYRMMESP-LVLNDYRLREDFAFDTPEFQVLYD-LLGQYGNLPPEVLAEQKEE 519

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
           +    +  L + L  ++    L    +E  +   +    Q     K+   
Sbjct: 520 VERAWYQVLAQDLPAEMSPQEL----SEVEMTRNKALLNQDNMRIKKEGA 565


>gi|312876450|ref|ZP_07736434.1| DNA primase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796808|gb|EFR13153.1| DNA primase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 618

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 136/626 (21%), Positives = 258/626 (41%), Gaps = 51/626 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
              ++ +L  I I +++  YV   +   N     + A CPFH E+TPSF+ + +K  ++C
Sbjct: 33  ERVVEQVLSKIDIVDVVSMYVPLKKVGAN-----FRALCPFHQERTPSFYVSPAKQIFHC 87

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIRLI 121
           F C V G+ + F+  +   +F E+++ LA  A + +     +  K     K + +LI L 
Sbjct: 88  FGCGVGGNVIHFVMRIENLTFTEALKVLAQRAKIDVDFSQSQSAKDRALAKQKEELISLH 147

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
               ++F   L   ++     Y+ +RGI     + F LG+ P++        ++      
Sbjct: 148 HDCFEYFQSQLYLRKNIDAARYVLKRGIRKETAKQFGLGFCPENNNLYEILSKKYSKEII 207

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
                   I  + +  +Y RF  RLIFPI  +  +VI FGGR +   ++ KY+NSP+T++
Sbjct: 208 DKSG----IFIERNGKNYCRFEGRLIFPIFDTMNRVIGFGGRIIDDSQAPKYMNSPDTLI 263

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K K LY    A +                  ++VEGYMDV+SL Q G+ NVV  LGTA
Sbjct: 264 FSKSKVLYGLNIAKSS------------KEKDFVVVEGYMDVISLHQEGIDNVVGVLGTA 311

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT+    LL +    +VLC D D  G  A +++ D+       G  V  + L   +DPD 
Sbjct: 312 LTQDHSFLLRRYKNEVVLCLDSDQAGKNATFRSADI---LYQNGLMVRVMELENAKDPDE 368

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKL 420
           +I+ +GK AF      ++ ++D   K+ + N   +  D++ +         +  I ++  
Sbjct: 369 YIKKFGKDAFLLKKQNAMFVIDFKIKQISSNYDLSKSDQKFKFVREYFENILMPITNEVE 428

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y + +    Q      + E +   +   +   +       Q+    +  +       
Sbjct: 429 RQEYVKKLSQITQIDEDVILKEFTKNMQTQLRRIENIQHFKQVQQTKTLTDTERLRKNDI 488

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                 LL   I      +     +++  +   +++ L++ + +   E        +   
Sbjct: 489 -----YLLSLYIEWAQKSENIKNIVSEEDFYTEDIKLLFNSIKNLIDEGMELTYSMLLSF 543

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + E    E+L +L              +  I +++   +                  +++
Sbjct: 544 ITEE---EILSELTSFSSKGFESEEAVKKAIEELKITSKTL---------------WLKQ 585

Query: 601 QIAQVTAKGEAEKTAILISILHEVHI 626
           ++ +   +G+ +K   L   L  +  
Sbjct: 586 ELLEAQKRGDIQKAMQLQIELKTLKA 611


>gi|225873433|ref|YP_002754892.1| DNA primase [Acidobacterium capsulatum ATCC 51196]
 gi|225793960|gb|ACO34050.1| DNA primase [Acidobacterium capsulatum ATCC 51196]
          Length = 590

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 165/637 (25%), Positives = 262/637 (41%), Gaps = 59/637 (9%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           DF +++     I  +IG+YV   +        ++   CPFH EKTPSF  +  + F++CF
Sbjct: 3   DFAQNVKQQADIVRIIGEYVRLKKAGAQ----NFSGLCPFHSEKTPSFSVHAGRQFFHCF 58

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIRLIE 122
            C   GD  +F+  +   SF E+V+ +A   G+ LP      P+   + + +  LI L E
Sbjct: 59  GCGQSGDVFTFVQKIENVSFPEAVRTVAQKCGIALPKREFHSPEEAAEHRQRAKLIDLHE 118

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK---GFS 179
            A  +F   L++        YL +RG+D   I  F++GYAPDS ++LRE L+        
Sbjct: 119 AAAQWFEEQLRSGEGAAARAYLAQRGLDEKGIARFRIGYAPDSFHALRERLQGMADLDTL 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLNSP 237
            +  + +    +       Y RFR R+ FPI +  G++IAF  R L  GE    KY+NSP
Sbjct: 179 RQSGLFSWKEQEDGQPGPIYSRFRKRITFPIANEGGRIIAFTARALESGEKAGPKYMNSP 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET L+ KG  L+N   A   ++           + F +LVEG MD +S   AG+ NV+++
Sbjct: 239 ETPLYSKGHVLFNLDKARQAIR----------EADFAVLVEGQMDCISAYLAGITNVLAT 288

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTA TE Q RLL + S R+++ FD D  G  AA K+I L       G  V  V L  G 
Sbjct: 289 SGTAFTEMQARLLARYSKRVIVNFDPDTAGANAAEKSIGL---LTEEGFEVKIVTLDGGL 345

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD FIR  G  A+   +  +    + L +R        +P+ + +    L   I  + +
Sbjct: 346 DPDRFIRENGVRAYMDALRTARRYQEYLIERARVQFPPRSPEAKVKALNFLLPHIRRVPN 405

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSG--YGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
              R  ++      L         E       R     +        +++++  +     
Sbjct: 406 AIARNEFATDAAQSLGIDSSLMREELKQAVAKRRDFVASAQAYPLTRAEQILLMAFAAAP 465

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            S+     E      L  H        +++  +             L             
Sbjct: 466 GSEARHTAE----AALARHSEDFARIREDVQQMV-----------HLLRAREAGIDP--- 507

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                + E    ++L  L   V DA   SA  EA +            L  R   L +Q+
Sbjct: 508 --LAAMQEPQQKQMLASLFVSVHDAEPASAEVEAAM------------LTVRRLALEQQQ 553

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            E+   I +    G  E    L     E+  ++ +++
Sbjct: 554 RELRGSILEAERTGRMEDALQLTRHAQEITRRLRELD 590


>gi|88801525|ref|ZP_01117053.1| putative DNA primase [Polaribacter irgensii 23-P]
 gi|88782183|gb|EAR13360.1| putative DNA primase [Polaribacter irgensii 23-P]
          Length = 667

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 155/656 (23%), Positives = 263/656 (40%), Gaps = 77/656 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  I  +     +  +IG++V   +  +N     +    PF DEK+PSF  +  K  +
Sbjct: 2   ISRSTIDRVFESARVEEVIGEFVQLKKAGSN-----FKGLSPFVDEKSPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G+ +SFL      ++ E+V+ LA    + +   +   E+K +   +  +  +
Sbjct: 57  KDFSTGKGGNTISFLMEHEHYTYPEAVKWLAKKYNIEIEETEQSSEEKAQMNERESMFLV 116

Query: 121 IEVATDFFHH-SLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+FH   L + + K +   Y  ERG     I+ F+LGY  D   +  +    KG+
Sbjct: 117 STFAKDYFHDVMLNSNKGKAIGLSYFKERGFKDETIKTFELGYCLDEWDAFTKAALAKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
             + +   GL I        +DRF+ R++FPI S  G+++ FGGR L+  +   KYLNSP
Sbjct: 177 DLKYLASTGLTIV--KENRQFDRFKGRVLFPIHSMSGRILGFGGRILTADKKAAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  F A   + K               LVEGY DV+S  Q G++NVV+S
Sbjct: 235 ESDIYHKSKILYGLFQAKKEIAKQ----------DNCYLVEGYTDVISFHQTGIENVVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTAL+  Q+RL+ +L+  I + FDGD  G+RA+ + IDL    L  G  V  V    GE
Sbjct: 285 SGTALSADQIRLVNRLTKNITVLFDGDAAGIRASIRGIDL---ILEQGMNVRVVQFPDGE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF + +   A +K + ++               S N P ++A +   +   I+ I D
Sbjct: 342 DPDSFAKSHTTEALKKYLEDASQDFINFKVSLLLKESNNDPVKKAGVIRDIVMSISKIPD 401

Query: 418 QKLRYYYSQAIRDRL----QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-- 471
              R  Y Q     +    + LF +     +       K +R ++          S    
Sbjct: 402 GIQREVYVQECARIMEISERVLFSELAQIITKGNFEKSKASRQQNSVKQDPNEPPSEYFL 461

Query: 472 -------------VKGKLSKKPSLREAALLLTLI-------------------------- 492
                        V      + S+ E  ++  L+                          
Sbjct: 462 AQENAQMGLVKGGVSSAAVDQISILEKEIIRILLLFGNEETEFIEEVETEDDHGKVITTA 521

Query: 493 --NHPAILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              +  +  E Y  L   +  + N   Q+++S +     + +    + +           
Sbjct: 522 RKYNNNVSAEIYVHLQDDETEFTNAIFQEIYSEVIHQLNQFEKVDIDALVNHENSEISAA 581

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA---LYKRFRLLSRQKEEIEKQ 601
           +   L  + +            +    +   + +       R  L+ ++ EE+ KQ
Sbjct: 582 VTSILMDEEKHQLSNWGGQNIEVKTALEILPKLVNDAVFNLRRVLIGKKIEELVKQ 637


>gi|312867747|ref|ZP_07727953.1| DNA primase [Streptococcus parasanguinis F0405]
 gi|311096810|gb|EFQ55048.1| DNA primase [Streptococcus parasanguinis F0405]
          Length = 592

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 140/632 (22%), Positives = 259/632 (40%), Gaps = 48/632 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            ++ I ++   + I  +IG+ V   +   N     +   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKELIAEIKNSVNIVEVIGEVVSLTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-PKIEKKEKIQTDLIRLIE 122
           CF C   GD   F+    G +F+++VQ +A  AG+ L     P          +L  + +
Sbjct: 58  CFGCGRSGDVFKFIEDYRGVAFMDAVQIVADKAGIALQYQARPAQPASANPNQELYEIHQ 117

Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A+ F+   L      +   +YL ERG+    I  F+LG +P     L  +L +K   + 
Sbjct: 118 EASKFYQAILMTTKMGEEARHYLHERGLTDEVIRHFQLGLSPAEGNYLYRNLSEKFSEKV 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK----GESVKYLNSP 237
                   I   ++ T +D F++R++FP+    G+VIAF GR            KY NS 
Sbjct: 178 ITDSGLFTIS--DAGTVFDAFQDRIMFPLTDDSGRVIAFSGRLWKMTEDGSHQAKYKNSR 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
            T LF+K   LY+   A    +K             + ++EG+MDV++  +AG++N V+S
Sbjct: 236 STRLFNKSYELYHLDQAKTSAKKQ----------HEMYIMEGFMDVIAAYRAGIENAVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALT   ++ L   + +++L +DGD  GL A  KA+D++         +  V +    
Sbjct: 286 MGTALTPEHVQHLSYFTKKVILTYDGDKAGLEATAKALDVLQ-----DLELEIVRIPDQM 340

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++         L+  S            + +       + E    L   I   + 
Sbjct: 341 DPDEYLKKTSPEDLATLLKNSRISKVEFLMHYWKPQYIENLQAQIEFVEKLAPMIAQTRS 400

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              +  Y   + D L       I +     R  ++       +  +       L    ++
Sbjct: 401 ITAQNTYIYKLADLLPDFDYLQIEQIVNNSRLHQRQEAQEGGRSKTSTFSVELLPNRGMT 460

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           +     E  LL  + + P +L +  +   D  +D  ELQ L+  L     +      +++
Sbjct: 461 RLIK-AENHLLSRMKDFPMVLNDY-RLRPDFAFDTPELQILYQLLC----QNGEVTSQDL 514

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            ++               +      +    E    ++  G  + +   +   LL ++ ++
Sbjct: 515 SEQ--------------PEGVQHAWYRMLEEDLPEEIADGELEEVEATRNRELLRKESQQ 560

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           I  ++ + ++ G+AEK  + +  L     ++ 
Sbjct: 561 IGNKVKEASSIGDAEKALLELERLIAQKRRME 592


>gi|194476718|ref|YP_002048897.1| DNA primase [Paulinella chromatophora]
 gi|171191725|gb|ACB42687.1| DNA primase [Paulinella chromatophora]
          Length = 681

 Score =  327 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 172/675 (25%), Positives = 290/675 (42%), Gaps = 61/675 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ +   + I ++I QYV   ++       ++   CPFHD+ +PS      K  
Sbjct: 5   RLSHRTIEIIKEKVDIVDVISQYVVLKKKGR-----EFLGICPFHDDTSPSLTVAPGKQL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           Y+CFSC   GD + FL  +   SF E V  LA    +P+   +   ++K +        L
Sbjct: 60  YHCFSCGAGGDAIKFLMEIKRDSFSEIVLELAKKYQLPIETANGARQEKLRQQLSRYEQL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175
              + +A+++F   L          YL E R +    I+ F+LGYAP+S  SL  +   +
Sbjct: 120 HSTLALASNWFQDQLHTEVGAEALTYLKEVRSLSQDTIKRFELGYAPESWDSLFRYLSNK 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K  S   +  AGL+I        YDRFR+R+I PI + +G++I FGGR L  GE  KYLN
Sbjct: 180 KNISSNILESAGLIISRKGKHGFYDRFRHRVIIPIHNRQGRIIGFGGRRLDGGEP-KYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK+L+    A + ++K           +  I+VEGY DV+SL   G+ NVV
Sbjct: 239 SPETEVFQKGKHLFGLHLASHSIRK----------ENKAIVVEGYFDVISLHVLGITNVV 288

Query: 296 SSLGTALTEYQLRLL--WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVL 352
           +SLGT+L+ YQ+  +  W    RIVL FD D  G+RA  +AI  +   ++ G   +  + 
Sbjct: 289 ASLGTSLSSYQISQISHWSEDKRIVLNFDTDSAGIRAVQRAISALEEFILEGRIELRILQ 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L   +DPD F++ +    +  L+ ++   +D    +  +++  +  +  A+    L   +
Sbjct: 349 LWGAKDPDDFVKKHSANDYLSLLNKAPLWLDWQIDQILKDKDTSKTEYFAQAVSSLVVLL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    +R +Y Q + +RL     +          +  K       +   Q   Q    
Sbjct: 409 GKLPQSAIRSHYIQQVAERLSNGQVRLKLRLEEDLLHQIKGETKPQYQYQQQDKFQYINE 468

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADI---RYDNNELQKLWSFLFSD-FVE 528
            G   K     EA +L   I  P       +EL  +   R+       +W+ +    F +
Sbjct: 469 SGSQKK----AEAEILRLYIYLPDYRTTIREELERMGWTRFTVQSYCLVWNTIKEIEFKK 524

Query: 529 QKYFLPEEIHQRLCERGFGELLK------------QLDRQVRDAGLWSATTEA------- 569
                P    ++L      +LL              LD  ++ + +   T E        
Sbjct: 525 LGTIYPTNSTEQLGAINLLQLLSDQISSLEVIPKHDLDNLMKPSEVNLITFEEPILLLRG 584

Query: 570 --NIVDVRQGYQQALAL-----YKRFRLLSRQKEEI-EKQIAQVT-AKGEAEKTAILISI 620
              I+D ++   +   L     ++R   L R  + + +++I Q        +K   +   
Sbjct: 585 AVAILDRQKSIMRCRHLLEAWSHQRLETLERCIDILIKQEIRQPPGPLNMEDKIESIFLK 644

Query: 621 LHEVHIQIHQIESQE 635
           L+   I+  ++  QE
Sbjct: 645 LNADAIRFQELYYQE 659


>gi|223932504|ref|ZP_03624505.1| DNA primase [Streptococcus suis 89/1591]
 gi|302024139|ref|ZP_07249350.1| DNA primase [Streptococcus suis 05HAS68]
 gi|330833084|ref|YP_004401909.1| DNA primase [Streptococcus suis ST3]
 gi|223898775|gb|EEF65135.1| DNA primase [Streptococcus suis 89/1591]
 gi|329307307|gb|AEB81723.1| DNA primase [Streptococcus suis ST3]
          Length = 596

 Score =  327 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 144/636 (22%), Positives = 258/636 (40%), Gaps = 50/636 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I ++   + I ++IG+ V   +   N     Y   CPFH EKTPSF+  + K FY
Sbjct: 2   LSKDKITEIKQALNIVDVIGETVALTKAGRN-----YVGLCPFHGEKTPSFNVIEDKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
           +CF C   GD   F+  + G SF ++   LA  AG    V     + EK+      L  +
Sbjct: 57  HCFGCGKSGDVFKFVEEVRGVSFADAAAILAEKAGFQTDVTPSYHQEEKRVSPHQVLYDI 116

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    I+ F+LG AP  +  L + L  +   
Sbjct: 117 HRDAAKFYHALLMTTKMGEEARAYLHQRGLTDDVIKTFQLGLAPAEQNILYQKLSGQYDE 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-----KYL 234
           E  +           +   YD F+ R+IFP+    G+++AF GR  ++         KY 
Sbjct: 177 ESLLNSGLFN--PSENNIIYDAFQARIIFPLADEYGRIVAFSGRIWTEENRNNKQLAKYK 234

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS  T +F+K   LY+   A   ++K               L+EG++DV++  + G+ N 
Sbjct: 235 NSRSTAIFNKSYELYHLDKAKAVIKKQ----------RETYLMEGFLDVIAAHRVGIDNA 284

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +  L K   +IVL +DGD  G  A  KA+D +    +       V L 
Sbjct: 285 VASMGTALTREHVAHLAKFCKKIVLTYDGDKAGQAATMKALDELQDFQVE-----IVSLP 339

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD F++   + A ++++ +S         +  +  + +    + E    +   I  
Sbjct: 340 DNMDPDEFLQKNSEEALQQVLTKSRISDVEFLIQYLKPENPDNLQMQIEFVDKIAPIIAK 399

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVK 473
           +     +  Y   + D L       + +     R  ++  R +   +  + +     +  
Sbjct: 400 VSSITAQNSYIYKVADLLSDFDYNQVEQAVNAVRLNQRQERTQQVFQSQTGQSYLPPVQT 459

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                     E  LL  ++ HP IL E ++   D  +   ELQ ++  +     E   F 
Sbjct: 460 IARITSLIRTENHLLYRMVEHPYILNE-FRLREDFYFATPELQAIYD-MLKKSGEITSFE 517

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             +++    +  +    ++L                   +V     + L + +   LL +
Sbjct: 518 LSQLNDSAQQAWYRMQEERL-----------------PDEVSPHEIEELEIRRDKELLKK 560

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + + + ++I + +  G A+     +  L +   Q+ 
Sbjct: 561 ENQHLARKIREHSHVGNADIALDELQKLLDRRRQME 596


>gi|156740278|ref|YP_001430407.1| DNA primase [Roseiflexus castenholzii DSM 13941]
 gi|156231606|gb|ABU56389.1| DNA primase [Roseiflexus castenholzii DSM 13941]
          Length = 652

 Score =  327 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 163/660 (24%), Positives = 266/660 (40%), Gaps = 72/660 (10%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYYCFSC 67
             +   I I + I  YV   +         Y   CPFH + +TP+FH       ++CF C
Sbjct: 6   DQIKEKIDIVDFISAYVPLRKTGR-----SYVGFCPFHPNTRTPAFHVFPDTQSFHCFGC 60

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
              G    FL    G  F E+++RLA  AGV L       E++++++T L+ +   A  F
Sbjct: 61  KASGTIFDFLMRREGIEFREALERLAQRAGVQLHPRTEAEEQQDRLRTRLLEVNAAAAAF 120

Query: 128 FHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEA 186
           F H L K+ R +    Y+ +R ID    E F +GYAPD    L  +L ++     + IEA
Sbjct: 121 FRHMLVKSQRGEEARAYVAKRRIDDATGEAFLIGYAPDDWSLLLSYLTERRGFAPEEIEA 180

Query: 187 GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK 246
             L     +   YDRFR+RL+FPIRS+ G+++AFGGR L      KY+NSP+T LF KGK
Sbjct: 181 AGLAIHHETRGYYDRFRHRLMFPIRSASGEIVAFGGRAL-GDVQPKYMNSPQTPLFDKGK 239

Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306
            LY    A + ++           S   ++VEGY+DV+   Q G +NVV+ LGTALT   
Sbjct: 240 VLYGLDLARDAIR----------QSDAAVIVEGYVDVIIAHQYGFRNVVAPLGTALTADH 289

Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI------------------PGNRV 348
           + L+ KLS R+ L  D D  G RA  K +  +                           +
Sbjct: 290 VALVKKLSHRVYLALDADTAGARATLKGLQALQSQPEGELTAVISPQGVIALQRRQDVEI 349

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
             + L  G+DPD  I+      +   +  + P +D   +  T +   ++   RAE    +
Sbjct: 350 RILALPEGKDPDEVIQ-ENPEQWRAALAAARPAMDFYIETLTSDLDLSSGRGRAEAVERI 408

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRL 466
              +  I +   + +Y Q +   +       +   S   R    ++ +         ++ 
Sbjct: 409 APLLTQIANPVEQAHYIQQLARLIDIEEAHILAALSNKARQEGQRRPSDQGRATKVLEQQ 468

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA-----------------DIR 509
              +  +   +  P  +E  LL  +I +P       ++L                  D  
Sbjct: 469 PGDANQQPDETPPPPTQEEYLLSWIIRYPTARAAVEEKLHRDLATYPALQSLMSGTIDEL 528

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
           + ++E + LW    +         P+     L        L  + ++V +          
Sbjct: 529 FTSDECRALWRAWIAAPT---GSDPQAWATTL-----YAPLDAVAQRVLELHAPQPQAYR 580

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            + D  +      A   +     R   +I +     T + E E    L+  L +V   I+
Sbjct: 581 IVNDALEC-----ATILQRDAAKRWLVQIARMQTAATGEAEQEI---LLDQLVQVKQFIN 632


>gi|192361440|ref|YP_001981273.1| DNA primase [Cellvibrio japonicus Ueda107]
 gi|190687605|gb|ACE85283.1| DNA primase [Cellvibrio japonicus Ueda107]
          Length = 694

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 162/513 (31%), Positives = 247/513 (48%), Gaps = 19/513 (3%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL  + I +++   V   R   N     Y ACCPFHDEKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLDRVDIVDVVDSRVKLKRSGKN-----YSACCPFHDEKTPSFTVSPEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+      SF E+V++LA I G+ +P         K+E+ +  +  L
Sbjct: 60  YCFGCGASGNALGFVMDYERLSFPEAVEQLARITGLEVPREVQSEAEAKREQEKKSIYSL 119

Query: 121 IEVATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +E A DF+ H L+    K     YL  RG+D    + + +G+AP    +L + L Q    
Sbjct: 120 LEKADDFYQHQLRQHPSKHLAVNYLKGRGLDGKTAKTYGVGFAPPGWDNLLKTLGQDDDD 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  +I+ G+LI  +     YDRFR+R++FPIR +RG+VI FGGR L   +  KYLNSPET
Sbjct: 180 KHLLIQGGMLIHQEQEKKLYDRFRHRIMFPIRDTRGRVIGFGGRVL-GDDKPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A    ++  R          +++VEGYMDV+SL Q G+   V++LG
Sbjct: 239 PVFHKGQELYGLYEARLAYRELPR----------LLVVEGYMDVVSLAQFGIGYGVATLG 288

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA     L   +K +  +V CFDGD  G  AA +A+D  L  +  G  V F+ L  GEDP
Sbjct: 289 TACGPDHLDRAFKYTSEVVFCFDGDKAGRSAALRALDAALETMADGRAVKFLFLPEGEDP 348

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ +R  G   FE +I  ++PL D L+    E  +  T + RA         ++ +    
Sbjct: 349 DTLVRQIGPDKFEHMIELAVPLEDYLFDAVAEGLNIRTMEGRATFSKRAAPLLDRLPKGV 408

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    + +  R     +      +      +       ++         +  + ++ K 
Sbjct: 409 FRELMFENLATRTGLNRRLLDELIADQKAKGEDFISTATREAGPHTSGHPAPGEERIPKV 468

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDN 512
              R+  +  +    P       +E   + Y +
Sbjct: 469 TLPRQEPVWFSAPQLPEPSGHIVEEAPPVDYQH 501


>gi|297617786|ref|YP_003702945.1| DNA primase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145623|gb|ADI02380.1| DNA primase [Syntrophothermus lipocalidus DSM 12680]
          Length = 595

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 162/599 (27%), Positives = 269/599 (44%), Gaps = 34/599 (5%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
               ++ +   I I  L+ +  D  R+ +      YW  CPFH EKTPSF  +  K  +Y
Sbjct: 2   NEQLLRTIEDRIDIVELVSESTDLVRKGS-----RYWGLCPFHSEKTPSFSVSAEKRLFY 56

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF CHV G+  +F+      SF E+V+ LAA AG+         +K+++ +  +I + E+
Sbjct: 57  CFGCHVGGNIFTFVMKRDNLSFKEAVEVLAAKAGIEYVPKSDGAKKRKRDEERIIEMNEL 116

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
           A  ++H  LK+ +  R   YL+ERG+D      F+LGYAPD    L E+L  +G+S  ++
Sbjct: 117 AAAYYHQLLKSDKGARARRYLEERGVDWETAVAFQLGYAPDEWRGLLEYLISRGYSGPQL 176

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
           + +GL+       + YD FR+R+IFPIR+  G V+  GGR+L+  +  KYLN+PET +F 
Sbjct: 177 VASGLIKRSPVKDSYYDVFRDRVIFPIRNKSGTVVGMGGRSLNPADIPKYLNTPETAVFS 236

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K  NLY  F A +++++           +  ILVEGYMD + L Q G++  V+SLGTA T
Sbjct: 237 KRDNLYGLFQARDHVRRL----------NEAILVEGYMDCIMLHQYGIRQAVASLGTAFT 286

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
             Q RLL   + R+VL +DGD  G R A +A +L+      G +V  V+L   +DPD +I
Sbjct: 287 IEQARLLRGYTERVVLIYDGDQAGQREALRAAELMS---KEGLKVEVVVLPEDQDPDEYI 343

Query: 364 RCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
              GK  F + I  +    ++     +  +    +  E+  +       +  ++      
Sbjct: 344 MVKGKEEFLQYIKNNKKNPMEFKLDFKLRDVEGQSLVEKLAVLHETFCDLQQVESLLELE 403

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            +   +  +L+        E     R W++  R          + + +    +    P  
Sbjct: 404 NHLAFVARKLELPENAVRRE----FRVWQRKTRSIGIIRNRNSINRYNKGDKEKFASPEF 459

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           +   LL  ++N     +  ++      + +  L+K  +            L  E    L 
Sbjct: 460 QVR-LLAKMVNDENTFKRVFETCGTKFFTDPGLRKAAALFQEKGSFHHGQLIAEAVHNLP 518

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
           E      L +++                     + + + +   K  R   R   EIE Q
Sbjct: 519 E--LAATLARVE--------MVEEENWPSDHEVEKFIREVKRRKMERKWQRLLTEIEAQ 567


>gi|16330821|ref|NP_441549.1| DNA primase [Synechocystis sp. PCC 6803]
 gi|2494149|sp|P74143|PRIM_SYNY3 RecName: Full=DNA primase
 gi|1653314|dbj|BAA18229.1| DNA primase [Synechocystis sp. PCC 6803]
          Length = 635

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 165/653 (25%), Positives = 283/653 (43%), Gaps = 49/653 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I+++   I I  +IG YV   +R       D+   CPFHDEK+PSF  + +K  
Sbjct: 5   RLHPDTIQEIKQRIDIVEIIGDYVVLKKRGR-----DHLGLCPFHDEKSPSFSVSPAKQM 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117
           YYCF C   G+  +FL  L   SF +    LA    + +  ++P  +++ +     +  L
Sbjct: 60  YYCFGCGAGGNAFNFLMELGKRSFTDVALDLARRYQIQIQTLEPAQKQELQRQLSLREQL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175
             ++ VA  F+HH+L   + +    YL  +R + S  I+ F+LGYAP    +L  + + Q
Sbjct: 120 YEIMAVAAGFYHHTLFQPQGQEALTYLDQKRCLSSATIQEFQLGYAPAGWETLYRYLVEQ 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K +    + +AGL+    +    YD+FR+RL+ PIR  +G+ IAFG RTL   E  KYLN
Sbjct: 180 KRYPVAAVEQAGLIKARQSGTGYYDQFRHRLMIPIRDVQGKTIAFGSRTLGNDEP-KYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LFHK K L+    A   +QK              ILVEGY DV++L ++G++  V
Sbjct: 239 SPETPLFHKSKTLFGLDQAKTAIQKV----------DEAILVEGYFDVIALHESGIKQTV 288

Query: 296 SSLGTALTEYQLRLL--WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352
           ++LG AL+  Q++ L  +  S +I+  FD D  G+ A  +AI  +   +  G      + 
Sbjct: 289 AALGIALSRDQVQSLMRFSQSKQIIFNFDADKAGINATQRAIQEIEPLVYSGQVNLRILN 348

Query: 353 LSRGEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           L  G+D D FI      K  ++ L+ ++   VD   ++  + ++   P +  ++   + +
Sbjct: 349 LPAGKDADEFIHSSAENKEIYQTLVKQAPLWVDWQIQQLLKQKNLKDPLDFEQVARGMVD 408

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  + DQ  R YY Q   + L Q   + I+            ++      P +   +  
Sbjct: 409 ILKRLTDQNKRAYYLQLCGEILSQGDSRLISLQVNNLS-----SQLTYGDRPGKNGSRHW 463

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR--YDNNELQKLWSFL--FSDF 526
             K   S      EA LL   ++ P       Q L +    +     + LW  +    ++
Sbjct: 464 QAKDPTSSLLEKAEALLLKIYLHCPQERPTIDQILTENDLLFSFAHHRLLWQKIDQVREY 523

Query: 527 VEQKYFLPEEI-----HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
                    ++        L + G    ++ L +    +          I +     ++ 
Sbjct: 524 FNLDSDPDNQLPLLVQLAYLEQEGDFNSVESLFQLTETSAEDLFRANLRIPEAIAIMEKV 583

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                +             ++ Q+  + +AE          + H +I ++ESQ
Sbjct: 584 PWESYQKHCF--------GKLQQLDPRTQAEDFRYYQEQWQKAHQEIQRLESQ 628


>gi|90407544|ref|ZP_01215726.1| DNA primase [Psychromonas sp. CNPT3]
 gi|90311354|gb|EAS39457.1| DNA primase [Psychromonas sp. CNPT3]
          Length = 581

 Score =  326 bits (836), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 166/623 (26%), Positives = 269/623 (43%), Gaps = 61/623 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKT-PSFHCNDSKG 60
             P++FI DL+    I ++I   V   ++       D+ A CPFH+     SF  +  K 
Sbjct: 4   RIPQNFIDDLIAQTDIVDVIDSRVKLKKQGK-----DHRASCPFHNGNNKSSFSVSTEKQ 58

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTD 116
           FY+CF+C   G+ L+F+    G  F++++  LA    + +P  +             + D
Sbjct: 59  FYHCFNCGASGNVLTFIMEYDGVEFVDAIDILAEQLSIEVPREENNNATSSPTQTIDRKD 118

Query: 117 LIRLIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR- 174
           L +++   T F+   L+   + +++  YL  RG+     + FK+GYAPD    +R+    
Sbjct: 119 LYQIMADITHFYQQQLRQHINSEKVINYLKGRGLSGKTAQHFKIGYAPDGWDEVRKRFAT 178

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
                ++ I    L+      A SYDRFR+RL+FPI   RG+V+ FGGR     E  KYL
Sbjct: 179 SPEQEKKLIDIGMLISKSTEGAGSYDRFRDRLMFPIYDRRGRVVGFGGRVFDNSEP-KYL 237

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET LFHKGK LY  +      +   R          I++VEGYMDV++L Q GV   
Sbjct: 238 NSPETPLFHKGKELYGLYHVKQAYKDIPR----------ILVVEGYMDVVALAQFGVDYA 287

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGTA T   +  L++ S  I+ CFDGD  G  AA++A++  L +L  G  + F+ L 
Sbjct: 288 VASLGTATTADHIHTLFRHSSEIICCFDGDKAGRTAAWRALENALPYLQDGRTLRFMFLE 347

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            GEDPDSFI+  GK  FE L+ E+LP  D L++        +  D +A+L       I+ 
Sbjct: 348 EGEDPDSFIQKKGKQHFETLVKEALPFSDFLFQHLLTQVDMSNRDSKAKLAQLAIPLISQ 407

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           + +   +    + +   L       I                            S+L   
Sbjct: 408 MSESVFKEMMEERLITLLGIEKSALIKLM----------------------PKASTLSAP 445

Query: 475 KLSKKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           K SKK +      +  ++ HP I  +   + E  +I+        L   L        + 
Sbjct: 446 KQSKKVTPM-RLAISLVLQHPNIAYDLPLFPEFKEIKLPG---LSLLDQLLDICRTAPHI 501

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              ++ +   ++     LKQL              + +       +   L  +     + 
Sbjct: 502 NTGQLLEYWRDKPESRQLKQLAVW---------NNQVDEGKYEDVFLDILENFLTLH-ID 551

Query: 593 RQKEEIEKQIAQVTAKGEAEKTA 615
           ++ E+++ +  +       E   
Sbjct: 552 QKIEQLKMKSRKGETLTSTEILQ 574


>gi|332827259|gb|EGK00029.1| hypothetical protein HMPREF9455_03618 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 665

 Score =  326 bits (836), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 165/682 (24%), Positives = 290/682 (42%), Gaps = 66/682 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  ++    I +++ Q+V   RR  N     +   CPFH +KTPSF+ + +K   
Sbjct: 2   IDQGTIDRIMDAAQIVDVVSQFVTLKRRGIN-----FVGLCPFHTDKTPSFYVSPAKNIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CF+C   G  + F+      S+ E+++ LA    + +   +   E+K+    +  L  L
Sbjct: 57  KCFACGEGGTAVHFIMKHEQLSYYEALKYLAKKYNIEIQEREFTDEQKQAYNERESLFIL 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A D+F ++L N  + +     Y  ERG     IE F+LGY+ + R +  +   + G+
Sbjct: 117 NDYAQDYFVNTLHNHLEGKSIGLSYFKERGFREDIIEKFQLGYSLEQRDAFSQEALKNGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237
            E+ +++ GL I  +++    DRFR R++FP+ +  G+VIAFGGR L K   + KY+NSP
Sbjct: 177 KEDYLVKTGLAIKSEHNNQLIDRFRGRVMFPVHTLSGKVIAFGGRILKKAENTGKYVNSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HKG  LY  F A   + K          +    LVEGY DV+S+ QAG++NVV+S
Sbjct: 237 ESEIYHKGNELYGIFFAKQAITK----------ADCCYLVEGYTDVISMHQAGIENVVAS 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ + +  + + +DGD  G++AA + IDL    L  G  +  +LL  GE
Sbjct: 287 SGTALTNGQIRLIHRFTDNVTVIYDGDAAGIKAALRGIDL---LLEDGMNIKVILLPDGE 343

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF +     +    I  +         +     + N P +RA L   + N I+ I D
Sbjct: 344 DPDSFAKKQNAESLTNYIKANEVDFMRFKTKLLLEEAGNDPIKRAALISDIVNSISIIPD 403

Query: 418 QKLRYYYSQAIRDRL----QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +R  Y +     L    + L Q+   +   Y           + +     L Q  +  
Sbjct: 404 NIIRTVYIKDCSILLDVDERILVQEVTKKRLAYLEKTAPQKMEEEMRAVHNDLSQPIIHS 463

Query: 474 GK--LSKKPSLREAALLLTLINHP-AILQEQYQE--------------------LADIRY 510
                       E A+L  ++     I+ E   E                         +
Sbjct: 464 KAVVKKTPIDKFELAILYYIVRFGMEIMLEGGDENPVTGDMPTTVIDWVKFDLQRDGFWF 523

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR---QVRDAGLWSATT 567
            N     +        V++ +           +    ++  +L     Q+    +     
Sbjct: 524 TNPLYTLMLEEAIERSVDETFIPARYFLAH-TDAQVSKIAAELVSDRYQLSKLHIKQFGE 582

Query: 568 EANIVD--------VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
            A   D        +R+   + +   K    ++++ +EI+ ++A    +G  +    L+ 
Sbjct: 583 NAKKEDTPLAEEKHLRKDVPRIVTELKNAY-ITKRIKEIKDEMAVKQKEGNWDTAIELMQ 641

Query: 620 ---ILHEVHIQIHQIESQEAMI 638
               L EV   + +   +  ++
Sbjct: 642 QIKELEEVKKALAKALGERIIL 663


>gi|303257747|ref|ZP_07343759.1| DNA primase [Burkholderiales bacterium 1_1_47]
 gi|302859717|gb|EFL82796.1| DNA primase [Burkholderiales bacterium 1_1_47]
          Length = 649

 Score =  326 bits (836), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 167/658 (25%), Positives = 282/658 (42%), Gaps = 49/658 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             + FIK+LL    I  ++ + V   ++  +A     WACCPFH+EK+PSF  N  +GFY
Sbjct: 2   IAQSFIKELLDRADIYEVVNRRVPLQQKGASA-----WACCPFHNEKSPSFSVNRERGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G+ +SFL       F+++V++LA+   + +   +    K +  +  L  +++
Sbjct: 57  HCFGCGEHGNAISFLMKYENLPFVDAVEKLASEFSMQV-RYEGGAPKPKSGKPRLSEIMQ 115

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A +F+     +  DK    YL  RG+    IE F +G++PD+ ++L             
Sbjct: 116 RAMEFYRDKFNS--DKFSQDYLHNRGLTDETIERFGIGFSPDAWHNLDAVFTPDLKPLLL 173

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                       S   YD FRNRL+FPIR+ RGQVIAF  RT+  GE  KY+N+ +T +F
Sbjct: 174 EAGLQ---RTGQSGNVYDFFRNRLMFPIRNIRGQVIAFSARTM-IGEEPKYINTGDTPIF 229

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG  ++  + A   +Q   R          +I+VEG MDV+ L QAG     + LGTA+
Sbjct: 230 TKGSEVFGLYEARKSIQDKKR----------VIVVEGQMDVIQLSQAGFGEACAPLGTAI 279

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
               +  L K++  ++  FDGD  G +AA +A+DL L  L    +V+FV L  GEDPDS 
Sbjct: 280 RAEHIERLLKMTDHVIFSFDGDAAGRKAAKRAMDLSLPLLDDAQKVSFVFLPEGEDPDSL 339

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++  G  AFE+++ ++LPL   L +  ++       ++R          +   K   LR 
Sbjct: 340 VKKSGAPAFEEMLKKALPLSSYLIEALSQGLDLAVLEDRNAFIEEASPLVRKTKSPLLRD 399

Query: 423 YYSQAI--------RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
              + +         D L++ F   +   +   R      +         R     +   
Sbjct: 400 GLIERLSTAVGYKNSDELRKYFGFPVLPPAAPQRPSGFGNQRYSFGRGYDRYKTPRIPTS 459

Query: 475 KLSKKPSLREAALLLTL---INHPAILQEQYQELADI--RYDNNELQKLWSFLFSDFVEQ 529
                P   +A L+  L   +  P +  E    LA+     ++   + L+  +     E 
Sbjct: 460 TGRSIPPTADAPLMALLRNFLRFPQLALEFEGMLAEQLSESNSPVSELLFKVIERVTHED 519

Query: 530 KY-FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN--------IVDVRQGYQQ 580
           +      +    L         K++D        +      +           + Q   +
Sbjct: 520 ESGHTLAQFLADLPGPADENFEKEMDSARSMISTFLLEEGIDSVIRKGLSQGQILQTPLE 579

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI-----LISILHEVHIQIHQIES 633
           A  L  R  LL  +   +E Q   ++ KG  +         L+ +  ++  +I  I++
Sbjct: 580 AARLECRRILLQMELNRVEVQRRALSTKGNLDDADRKVFRDLMQLDQDLQKEIKSIDA 637


>gi|159896547|ref|YP_001542794.1| DNA primase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889586|gb|ABX02666.1| DNA primase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 645

 Score =  326 bits (835), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 152/654 (23%), Positives = 264/654 (40%), Gaps = 56/654 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYY 63
              I D+   I I + I  YV   +   N     +   CPFH + +TP+F        Y+
Sbjct: 2   NSVIDDIKERIDIVSFISDYVPLRKAGRN-----WVGFCPFHSNTRTPAFTVFADSNSYH 56

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   G    FL    G  F E++ +LAA AGV L     + ++++ +++ ++ L   
Sbjct: 57  CFGCKASGTIFDFLMQREGIDFPEALNQLAARAGVQLRQRTAQDDQEDVLRSRMLELNAA 116

Query: 124 ATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+ H  L++ +   +  Y+++RG+    +E F+LGYA +   SL  +L  +  +   
Sbjct: 117 AARFWSHQLLQSPKAAHVRSYIEQRGLTPQTVEQFQLGYASEDWSSLLGYLHDRHGANPS 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
            +    L         YDRFR RL+FPI +++GQ++ FGGR L      KY+NSP+T+LF
Sbjct: 177 EVAEVGLALEREQGGYYDRFRGRLMFPIHNAKGQIVGFGGRIL-GDGHPKYINSPQTLLF 235

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY  F A   ++ +    V       I             QAG +NV++ +GTAL
Sbjct: 236 DKSSLLYGLFQARETIRSTDSVVVVEGYVDVI----------MAHQAGFRNVLAPMGTAL 285

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID------------------LVLCHLIP 344
           T+     L K++ RI L  DGD  G  AA + ++                  ++      
Sbjct: 286 TDVHAGQLNKMTKRITLAMDGDAAGQSAALRGLETLRETLDTHVRPVPTASGMLRWEREL 345

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
              +   LL  G DPD  +R      +  LI  + PL+D      T     N+   ++  
Sbjct: 346 DATIKIALLPDGRDPDDIVR-NNPEEWRSLIANAQPLMDFYLATLTRGLDLNSAKGKSTA 404

Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
              L   +N I D   + +Y Q + ++++   +       G     ++   HR  +  + 
Sbjct: 405 VERLTPLLNQIADPVEKAHYIQRLANQIKIDQRLIEGSIGGDQPERQRKPNHRQSRPAAP 464

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW----S 520
             + S L      ++ + RE  LL  LI  P +     ++L D       L++LW    S
Sbjct: 465 PPVFSIL------EQEARREDFLLSLLIRFPQVQAVVSEQLRDDLAAAPTLRELWSGDVS 518

Query: 521 FLFSDFVEQKYFL----PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            LF     +  +      + +           +  +L         W          V +
Sbjct: 519 ELFERVENRVLWDLWRSAQAMATPNPIEWLETVPAELQAHGERLLNWDHAPPTRSFRVTR 578

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             ++ L   +    L ++  +   ++ Q+ A  E ++   L+     +   +  
Sbjct: 579 EAEECLRPLR--HRLGKRWSD---RLGQIIAAAEPDQQERLLEQAMAIQHYLRA 627


>gi|114778493|ref|ZP_01453337.1| DNA primase [Mariprofundus ferrooxydans PV-1]
 gi|114551218|gb|EAU53777.1| DNA primase [Mariprofundus ferrooxydans PV-1]
          Length = 580

 Score =  326 bits (835), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 162/611 (26%), Positives = 264/611 (43%), Gaps = 50/611 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           +   F+ ++L    I  LIG++V+  +  +N         CPFH EK+PSF  +  K  Y
Sbjct: 4   FQPSFLDEVLARTDIVELIGRHVELKKSGSNL-----MGLCPFHHEKSPSFSVSADKQLY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           YCF C   G    FL    G +F E+V+ LA  AG+ +P    +    E  Q     L+E
Sbjct: 59  YCFGCGQGGGAFQFLMEHDGYAFPEAVEYLAEKAGLEVPQETKQDHGDEVRQKRDYELLE 118

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A    + +L      +   YL +RG+ +  I  + LGYAP     ++        +  +
Sbjct: 119 RAAQAMNKALHGELGGKAAAYLQQRGLPADIIRDYMLGYAPPGYGFMKRLFGSDSATNSR 178

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPETIL 241
           +   GL+          DRFR+RL+F IR  RG+++ FGGR L  GE   KYLNSPET  
Sbjct: 179 LETVGLVFK--GEHGYGDRFRDRLMFAIRDRRGRIVGFGGRVLGSGEGEAKYLNSPETPY 236

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHK   LY F    + ++KS            +++VEGYMDVL+L   G++  ++ LGTA
Sbjct: 237 FHKSDLLYGFSEHRDTIRKS----------KQLVVVEGYMDVLALASHGLKIGLAPLGTA 286

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           + E Q+R +++L    V CFDGD  G +AA++A++ +L  L       F+ L  GEDPDS
Sbjct: 287 IGERQIREIFRLCDTPVFCFDGDRAGRQAAWRALERMLPLLKAELMPAFLYLPEGEDPDS 346

Query: 362 FIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            ++  G  AF  +L  E+ P+++       +  +    + RA +       +  + D  L
Sbjct: 347 LLKQEGGEAFARRLKEEAKPVLETWL-HGLKLLAGQGAEGRARMAKKADTMLAAMTDSYL 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              + Q          Q                               +S    +     
Sbjct: 406 MQAWRQEAERSSGIALQHRRRAAV---------------------TDVASEPAARADIVL 444

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +  E   +  L+  PA   +      +   DN  +  L+S  FS   + +    +   Q 
Sbjct: 445 NPVEDRFMAGLMQKPARFLQLSGAAMEFFVDNPAIHALYSRAFSMQADAETETIDIARQL 504

Query: 541 LCERGFGE-LLKQLDRQVRDAGLW--SATTEANIVDVRQGYQQ------ALALYKRFRLL 591
           + E    + ++ +   Q     +   S   +    D+R   +Q      ++ L KR R L
Sbjct: 505 IRECPADQNMISRWINQATVHDIEYKSLLLDMEANDIRCRIRQGLSLGESVQLQKRLREL 564

Query: 592 SRQKEEIEKQI 602
             Q++ +++Q+
Sbjct: 565 QAQQQLLKEQL 575


>gi|121595442|ref|YP_987338.1| DNA primase [Acidovorax sp. JS42]
 gi|120607522|gb|ABM43262.1| DNA primase [Acidovorax sp. JS42]
          Length = 653

 Score =  326 bits (835), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 169/679 (24%), Positives = 279/679 (41%), Gaps = 83/679 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + P+ FI++LL  + + +++G+YV   +   N     +   CPFH EK+PSF  + SK F
Sbjct: 7   SIPQSFIQELLARVDVVDVVGRYVQLKKSGAN-----FMGLCPFHGEKSPSFSVSPSKQF 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-------KEKIQ 114
           ++CF C   G+ + FL    G  F E+VQ LA   G+ +P  +    +       + + Q
Sbjct: 62  FHCFGCGKNGNAIGFLMDHAGMGFREAVQDLAQQIGMQVPDDENASPQDRERAAAQRQKQ 121

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  ++E A D +   L+ +   R   Y   RG+     + + LGYAP+    L     
Sbjct: 122 ATLTDVLEKAGDAWRRHLRES--PRAVQYFKGRGVSGQVAKRYGLGYAPEGWRGLASVF- 178

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
              +    + E+GL+I  +     YDRFR+R++FPIR+ +G+ I FGGR L   +  KYL
Sbjct: 179 -PEYDSPLLEESGLVIVNEEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVL-GDDKPKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKG+ LY  + A N ++             + ++ EGYMDV++L Q G  N 
Sbjct: 237 NSPETPVFHKGRELYGLYEARNAIR----------EHGYALVTEGYMDVVALAQLGFPNA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V++LGTA T   +  L++ +  +V  FDGD  G RAA KA+D  L +      V F+ L 
Sbjct: 287 VATLGTACTPEHVHKLFRFTDTVVFSFDGDAAGRRAARKALDGALPYASDTRSVKFLFLP 346

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPDSF+R YG  AF + + +++PL   L +   E     T + RA +  + +     
Sbjct: 347 AEHDPDSFVRAYGPEAFARHVGDAVPLSRFLLEAAREGCDLGTAEGRAHMLSNARPLWAA 406

Query: 415 IKDQKLRYYYSQAIRDR-------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
           + D  L+      + +        L QL+ +              +      + P  +  
Sbjct: 407 LPDGALKRQLLTELGELGQLPAPDLAQLWAQESPRPGSAAHPPAHDGAPFGDEPPWGQEP 466

Query: 468 QSSLVKGKLSKKPSLREA--------------------------------ALLLTLINHP 495
                      +P+ R                                       L++H 
Sbjct: 467 PGMEYGSPAGGEPARRWRKGGEWKGGRWRREEQRPPQPPLPRRPLTGRADHAARLLLSHM 526

Query: 496 AILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             L+E   E   +  D       L+ +L     E        + + L       L +++ 
Sbjct: 527 EFLEELSHEDHALLCDQPAPHGALFVWLEGQLHEHGPQSWAVLREALAGHDCQALAERVM 586

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                     A TE +  ++R   +  L             E I+ Q   + A    +  
Sbjct: 587 TGS------HAQTEGDETELRAELRGLLNRML--------IEAIKLQQNALIAAASQDP- 631

Query: 615 AILISILHEVHIQIHQIES 633
              I    ++  +   +E 
Sbjct: 632 -AAIERYRQLQERRRALEE 649


>gi|65321668|ref|ZP_00394627.1| COG0358: DNA primase (bacterial type) [Bacillus anthracis str.
           A2012]
          Length = 495

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 139/452 (30%), Positives = 224/452 (49%), Gaps = 23/452 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL +RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L   ++ KYLNSP
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +FHK K LYNF  A  +++K             ++L EGY DVL+  ++GV+  V++
Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALTE Q +LL +    +VLC+DGD  G  A  KA  L    L  G +V    L    
Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPDKL 344

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++ YG TA   L+   +  V          ++      + E    +   ++ ++D
Sbjct: 345 DPDEYVQQYGTTAXXNLVKSXISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
                 Y +++        +  + +   Y + 
Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKE 436


>gi|260592118|ref|ZP_05857576.1| DNA primase [Prevotella veroralis F0319]
 gi|260535996|gb|EEX18613.1| DNA primase [Prevotella veroralis F0319]
          Length = 645

 Score =  326 bits (834), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 149/661 (22%), Positives = 278/661 (42%), Gaps = 59/661 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  +  ++    I  +I  +V   +  T      +   CPFHD++TPSF  +  KG Y
Sbjct: 2   IDRPTVDRIMDATNIVEVISDFVSLRKAGT-----SFKGLCPFHDDRTPSFSVSPVKGVY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CF+C   G+ + F+      +++E+++ LA    + +       + +++E  +  +  +
Sbjct: 57  KCFACGAAGNAVKFIMEHEQMTYVEALKWLANKYHIEVHERELSAEEKQQENERESMFLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +F + L N  D       Y   RG     I  FKLG+    R +  E   Q G+
Sbjct: 117 NEWAAKYFENILHNDVDGTAIGLQYFRSRGFRDDIIRKFKLGFCLSRRNAFSEAALQAGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK---GESVKYLN 235
             E +++ GL      +    DRF  R++FP     G+V AFGGR L +   G + KY+N
Sbjct: 177 KREFLVKTGLC-FERENGELIDRFNGRVMFPWVGVSGKVTAFGGRLLDERTKGVAQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP++I++HK + LY  F +   + K             + +VEGY DVLS+ Q+G++NVV
Sbjct: 236 SPDSIIYHKERELYGIFQSKKAIAK----------HDLVYMVEGYTDVLSMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ YQ+R+L + +  IVL +DGD  G  AA +  D++L        V  +LL  
Sbjct: 286 ANSGTALSVYQIRMLHRFTSNIVLLYDGDAAGQHAALRGTDMLLAER---MNVKVLLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPD F R +   AF + + E+     +           +   +R+E    +   I+ I
Sbjct: 343 GKDPDEFARTHSAEAFRQYVEENQTDFIVFKINLLLKGVTDPI-KRSEAISSIVQSISVI 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSG---YGRYWKKNARHRDQKGPSQRLMQSSLV 472
           KD  LR  Y +   +R     +  + + +      R  +   +   ++   +     +  
Sbjct: 402 KDPILRDTYIRECSNRTGVSERTLMEQMNRNIHQYREQQTREQQIQKEAAIREQQSVAQP 461

Query: 473 KGKLSKKPSLREAALLLTLINHPA--ILQEQYQE-------------------LADIRYD 511
                 + S  E  ++ T++      IL++   E                      +   
Sbjct: 462 AASTVLQVSKVERMIMQTIVKDGDKIILRDIKDESTGQLLNITVAQYIAYTLMENGLSLT 521

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK-QLDRQVRDAGLWSATTEAN 570
           N    K+         + ++   E   Q +      E ++  +DR      L    TE +
Sbjct: 522 NPLYVKMLQEAVEHCADPQFKAEEYFTQHVDIDIANEAVRLSVDRFQLSESLQVKETEHS 581

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
              +R+     +  Y     L      +++ +A++    + ++   ++  ++ +  + + 
Sbjct: 582 ---LRERVLHIMTDYL----LDYYDSHLKELVARMKQTKDTDEMMGMLKEINAMQNKRNI 634

Query: 631 I 631
           +
Sbjct: 635 L 635


>gi|322389215|ref|ZP_08062776.1| DNA primase [Streptococcus parasanguinis ATCC 903]
 gi|321144120|gb|EFX39537.1| DNA primase [Streptococcus parasanguinis ATCC 903]
          Length = 621

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 140/632 (22%), Positives = 257/632 (40%), Gaps = 48/632 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            ++ I ++   + I  +IG+ V   +   N     +   CPFH EKTPSF+  + K FY+
Sbjct: 32  DKELIAEIKNSVNIVEVIGEVVSLTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFYH 86

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE-KIQTDLIRLIE 122
           CF C   GD   F+    G  F+++VQ +A  AG+ L       +        +L  + +
Sbjct: 87  CFGCGRSGDVFKFIEEYRGVVFMDAVQIVAEKAGIALQYQARPAQPTSINPNQELYEIHQ 146

Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A+ F+   L      +    YL ERG+    I  F+LG AP     L  +L +K   + 
Sbjct: 147 EASKFYQAILMTTKMGEEARNYLHERGLTDEVIRHFQLGLAPAEGNYLYRNLSEKFSEKV 206

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL----SKGESVKYLNSP 237
                   I   ++ T +D F++R++FP+    G+VIAF GR            KY NS 
Sbjct: 207 ITDSGLFTIS--DAGTVFDAFQDRIMFPLTDDSGRVIAFSGRLWKLTDDGSHQAKYKNSR 264

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
            T LF+K   LY+   A    +K             + ++EG+MDV++  +AG++N V+S
Sbjct: 265 STRLFNKSYELYHLDQAKTSAKKQ----------HEMYIMEGFMDVIAAYRAGIENAVAS 314

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALT   ++ L   + +++L +DGD  GL A  KA+D++         +  V +    
Sbjct: 315 MGTALTPEHVQHLSHFTKKVILTYDGDKAGLEATAKALDVLQ-----DLELEIVRIPDQM 369

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +++         L+  S            + +       + E    L   I   + 
Sbjct: 370 DPDEYLKKTSPEDLASLLKNSRISKVEFLMHYWKPQYIENLQAQIEFVEKLAPMIAQTRS 429

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              +  Y   + D L       I +     R  ++       +  +       L    ++
Sbjct: 430 ITAQNTYIYKLADLLPDFDYLQIEQIVNNSRLHQRQEDQSGGRSRTSNFSVELLPNRGMT 489

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           +     E  LL  + + P +L +  +   D  +D  ELQ L+  L     +      +++
Sbjct: 490 RLIK-AENHLLSRMKDFPMVLNDY-RLRPDFAFDTPELQILYQLLC----QNGEVTSQDL 543

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            ++               +      +    E    ++  G  + +   +   LL ++ ++
Sbjct: 544 SEQ--------------PEGVQHAWYRMLEEDLPEEIADGELEEVEATRNRELLRKESQQ 589

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           I  ++ + ++ G+AEK  + +  L     ++ 
Sbjct: 590 IGNKVKEASSIGDAEKALLELERLIAQKRRME 621


>gi|88606745|ref|YP_505162.1| DNA primase [Anaplasma phagocytophilum HZ]
 gi|88597808|gb|ABD43278.1| DNA primase [Anaplasma phagocytophilum HZ]
          Length = 607

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 169/632 (26%), Positives = 287/632 (45%), Gaps = 46/632 (7%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I  L   I + +++   +   +R       +Y   CPFH EKTPSF+ N     +YCF C
Sbjct: 11  ITLLRSKIRLIDVVAGKIKLTKR----SGNNYVGLCPFHSEKTPSFNINSENELFYCFGC 66

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
              GD + F+S   G  F +++Q L+    V L       ++ +   + L  ++E A  F
Sbjct: 67  GATGDVIQFVSDTEGLDFKQAMQYLSERYHVEL----LDDKRPDSSHSALYDVMEKAAVF 122

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
               L  +  K    YL +RGI    I  F+LGY       ++ HL   G S EK+ E G
Sbjct: 123 LSQQL--SVSKAALSYLKDRGISDSTINRFRLGYVT--STGIKAHLLSLGISMEKMSETG 178

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247
           LL              NR+IFPI +  G+VIA GGR+++ G + KYLNS E  LF K + 
Sbjct: 179 LLTKSVQDC-----LYNRIIFPICNPMGKVIALGGRSITPGHTPKYLNSAENALFKKREC 233

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           +Y    A+   +K  +          II+VEGYMDVL L Q G+ NVV  LGT++TE+ L
Sbjct: 234 MYGLHLAMGQAKKLGK----------IIVVEGYMDVLMLSQLGIHNVVGLLGTSMTEFHL 283

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
           + +W + P I++  DGD  GL+A+ K   L +  +  G+ + F+ ++ G+DP    R   
Sbjct: 284 KNIWSVVPEIIVWLDGDFAGLKASVKIAQLAVSIMKSGSSIRFISIAEGKDPYDICREQS 343

Query: 368 KTAFEKLIVESLPLVDMLWKRETEN---RSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
               + LI  +  L + +W+ E  +        P++   LE  +K   + I+D  +  +Y
Sbjct: 344 IDFVKDLIERAKLLSEFIWEYELSSSGIGDKVVPEQCMMLEGKIKEYTSRIQDPNVAKHY 403

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                 +++ L              +   A  R  K  S   +Q   +K  + +   LR 
Sbjct: 404 RNFFYQQMKALQGY----KKWNANSYAGTAVSRANKVKSCDRLQDVSMKVCMEENYQLR- 458

Query: 485 AALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRL 541
             ++ T+I  P +L +   +++ A I + + + + L   +          FL +++ ++L
Sbjct: 459 --VMYTIIECPKLLDDPAIFEQFASIDFSSVDRRVLQQHIVDIKSTCDNVFLKQDLVEKL 516

Query: 542 CERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             RG     +L+ + R + + G        +   + +  +Q         +LSRQ  EI 
Sbjct: 517 RPRGQNLEAILQYIIRSMANVGCAFIVPGLSDESIEKLAKQEWEKL----MLSRQLNEIH 572

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +QI ++  +G+ +    L     E+  ++  +
Sbjct: 573 EQIVKLRLEGKNDVALNLSEYAREIDDKLRSL 604


>gi|281420489|ref|ZP_06251488.1| DNA primase [Prevotella copri DSM 18205]
 gi|281405262|gb|EFB35942.1| DNA primase [Prevotella copri DSM 18205]
          Length = 653

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 155/675 (22%), Positives = 286/675 (42%), Gaps = 69/675 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  I  ++    I  ++ ++V   +R  N     Y   CPFH++  PSF  + ++G  
Sbjct: 2   IDRPTIAKIMDATKIEEVVSEFVTLKKRGIN-----YVGLCPFHNDSNPSFSVSPTRGIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF+C   G+ ++FL  L   ++ ++++ LA    + +       + +++E  +  +  +
Sbjct: 57  HCFTCGKGGNAINFLMELEQMTYPDALRWLAKKYKIEIQERELTNEEKQRESERESMFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A  +F   L +  D       Y   RG     I  F+LG+A   R +L E  +  G+
Sbjct: 117 NDWAAKYFQDILLHDVDGIAIGMAYFRGRGFRDDIIRKFQLGFALPKRTALAEAAKAAGY 176

Query: 179 SEEKIIEAGLLIDGDNS--------ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---K 227
           + + +++ GL    D              DRF  R IFP  S  G+V+AFGGR L    K
Sbjct: 177 NPKYLVDTGLCFKVDKDEAGNKSGEDKILDRFSGRAIFPWFSVSGKVVAFGGRVLDSRTK 236

Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
           G S KY+NSP+++++HK + LY  + A   + K             + +VEGY DV+S+ 
Sbjct: 237 GVSQKYVNSPDSVIYHKERELYGLYQAKKAIAK----------EDCVFMVEGYTDVISMH 286

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           Q G++NVV++ GTAL+ +Q+RLL + +  IVL +DGD+ G+ AA +  D+    L     
Sbjct: 287 QCGIENVVANSGTALSVHQIRLLHRFTSNIVLLYDGDNAGIHAALRGTDM---LLEEEMN 343

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
           V  + L  G DPDSF R +    F + I E+     + +K +   R    P +R++    
Sbjct: 344 VKVLFLPDGNDPDSFARSHSAEEFRRYIQENQTDF-IQFKTDILLRGVTDPVKRSQAINS 402

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW--------KKNARHRDQ 459
           +   I+ IK+Q  R  Y      RL       +   + + R          ++ A  +D 
Sbjct: 403 IVESISKIKNQITRASYITDCSHRLGVNEAIIVNALNNFVRNGMSEQVKAERRAAGLKDS 462

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE--------------- 504
              + +  QS +       K    E  L+  +I+H   L                     
Sbjct: 463 TVAAAQQAQSVMRAVTPLDKLLEVEGLLVQLIIHHGDQLITVQDVDGNDVEVAVAQYISL 522

Query: 505 ---LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
                  ++ N+   ++         ++  F+ E              L  L    ++  
Sbjct: 523 DLGGDGFKFHNDLYNQIMQEAVEHLEKEDDFVAETYFANHPNPEISR-LAGLPTGDQEVS 581

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
             S   + +   +RQ   + + L  R   ++++  E++++ A+            L+   
Sbjct: 582 TASLQMKMSADKLRQFVFKDI-LSFRTHYIAQRIIEVQQEFARNPTN------RELLQEF 634

Query: 622 HEVHIQIHQIESQEA 636
            ++  Q++ + + +A
Sbjct: 635 MKLK-QMNTLLASQA 648


>gi|54298251|ref|YP_124620.1| DNA primase [Legionella pneumophila str. Paris]
 gi|53752036|emb|CAH13462.1| DNA primase [Legionella pneumophila str. Paris]
          Length = 577

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 163/618 (26%), Positives = 277/618 (44%), Gaps = 52/618 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    +  LI  YV   +R        + ACCPFH+EKTPSF+    K FY
Sbjct: 5   IPQPFIDDLLNRTDLVELIDGYVPLKKRGN-----SHIACCPFHNEKTPSFNVVAKKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G+ +SF+   L   F ++V+ LA   G+ +P      + K  +   L  L+ 
Sbjct: 60  HCFGCGASGNAISFVMNYLNQGFTDAVETLATRLGLSVPRDGTGEKHKSSLN--LYNLMS 117

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
             + ++   LK    +    YL  RG+     + + LGYAP+  ++L    +    ++ +
Sbjct: 118 EVSQYYQKKLKYN-GQVAIDYLRNRGLSGEIAKRYHLGYAPEGWHNL---EKAFPNNQRE 173

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++  G+LI  D     YDR+RNR++FPI    G+VI FGGR L K +  KYLNSPET+LF
Sbjct: 174 LLSTGMLIKSDEG-KIYDRYRNRIMFPIHDRNGRVIGFGGRVLDKDQKPKYLNSPETVLF 232

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K + LY                 ++ +   II+VEGYMDV++L Q G+ NVV++LGTA 
Sbjct: 233 QKSRELYGLHQ----------VLSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 282

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           + + ++LL K +  ++ CFDGD  G +AA++A++  L HL  G    F+ L    DPDS 
Sbjct: 283 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 342

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +R  GK  F +L+ ++ PL    +   +++ + + P  + +L   +K  +  + +   + 
Sbjct: 343 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMVEGSYKQ 402

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                +  RL  +    +T         K   +    + P                    
Sbjct: 403 LLIDDLA-RLTHIESHRLTNLITDKSESKPEVQAAISRSPL------------------- 442

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
                +  L+ +P I     Q++        E   +   L     ++       + +   
Sbjct: 443 --RIAIALLLQNPEIYSIAIQQINPALLHEQEHH-ILLKLLQQLKDKPNANTATLIEFWR 499

Query: 543 ERGFGELLKQL---DRQVRDAGLWSATTE----ANIVDVRQGYQQALALYKRFRLLSRQK 595
              + EL+ +L   D QV +  L     +        +     +Q +   ++  L   ++
Sbjct: 500 NSSYFELIVKLAAWDHQVPEQELTKEFIDVLLFLQKQNREILIRQYIEKSRKTGLTEAER 559

Query: 596 EEIEKQIAQVTAKGEAEK 613
             ++  + +   + E EK
Sbjct: 560 LSLQNLLKERHGQAEIEK 577


>gi|313204699|ref|YP_004043356.1| DNA primase [Paludibacter propionicigenes WB4]
 gi|312444015|gb|ADQ80371.1| DNA primase [Paludibacter propionicigenes WB4]
          Length = 649

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 166/667 (24%), Positives = 294/667 (44%), Gaps = 50/667 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +     I +++G +V   +R  N +       CPFH EKTPSF  + +KG +
Sbjct: 2   IDQPTIDRITEAAQIQDVVGDFVTLKKRGVNLL-----GLCPFHGEKTPSFIVSPAKGIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CF C   G+ + F+      S+ E+++ LA    + +      P+ +     +  +  +
Sbjct: 57  KCFGCGKGGNSVHFIMEHEQISYYEALKYLARKYNIEVQERELSPEEQAVRNDRESMFLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A   F H+L N  D +     Y  ERG     I+ F+LGY+ + R +  +   + G+
Sbjct: 117 NEFAQKHFTHTLHNNLDGKAIGLSYFRERGFRDDIIQKFQLGYSLEQRDAFTQAAIRAGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
           ++E +++ GL ++GDN+    DRFR R++FP+ S  G+V+AFGGR L K + + KY+NSP
Sbjct: 177 NKEYLVKTGLTLEGDNNY-LADRFRGRVMFPVHSLSGKVVAFGGRILKKDDKMAKYVNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV+S
Sbjct: 236 ESEIYHKSNELYGIYFAKQSIVKQDR----------CFLVEGYTDVISMHQSGIENVVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GT+LT  Q+RL+ + +  + + +DGD  G++A+ + IDL    L  G  +  +LL  G+
Sbjct: 286 SGTSLTPGQIRLIHRFTENVTVIYDGDAAGIKASIRGIDL---LLEEGLNIKVLLLPDGD 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R    + F + +  +               + N P +RA L + +   I+ I +
Sbjct: 343 DPDSFARKTNASDFIEYVERNASDFIRFKTNLLLADAGNDPVKRAGLVLDIVRSISIIPN 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYG-RYWKKNARHRDQKGPSQRLMQSSLV--KG 474
             +R  Y +     L    Q    E +       +KNA  R    P            +G
Sbjct: 403 TAIRGEYVKECSTLLNVEEQMLYYEINKLKTNEQEKNATRRSNAAPDMPPPDEFFAHEQG 462

Query: 475 KLSKKPSLREAALLLTLINHPAIL---------------QEQYQELA--DIRYDNNELQK 517
            ++ +   +E  +L  L+ H   +                   +EL   ++ ++N     
Sbjct: 463 VVTSRFEEQERNILQVLVKHGEAVFFYSDEEKQHPVTVGDYILEELERDNLVFENPVHAL 522

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ---VRDAGLWSATTEANIVDV 574
           ++   +    +Q+ F  E             L   L  +   +          E +    
Sbjct: 523 MFEE-YKMHHKQENFSAERFFLYHQNGQISMLTADLVTEKYTLSKVHSKIKRVETDAERF 581

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIE 632
                + +  +K   +L   K+++ +  A   AK  A  ++    +S L  V  Q+ +  
Sbjct: 582 IDLVPRVVFEFKNMLILDMIKQKLLQMKAANDAKNNALVDEIMQEMSQLEVVKKQLSKTL 641

Query: 633 SQEAMIE 639
            +  +I+
Sbjct: 642 GERIIIK 648


>gi|196229538|ref|ZP_03128403.1| DNA primase [Chthoniobacter flavus Ellin428]
 gi|196226770|gb|EDY21275.1| DNA primase [Chthoniobacter flavus Ellin428]
          Length = 602

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 163/636 (25%), Positives = 272/636 (42%), Gaps = 53/636 (8%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M+  P + I+ ++    + ++IG Y    R         Y A CPFH+EKTPSF  N  +
Sbjct: 1   MSLIPPEIIEQVIAANDVVDVIGGYFPLKRSG-----PVYKAICPFHNEKTPSFTVNPQR 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDL 117
             + CF C   G+ L F+       F+ +V++LA  AG+ +   +   E+  +      L
Sbjct: 56  QIFKCFGCGAGGNVLRFVMNYENLDFLGAVKKLAERAGIKIEQTELSAEQAAEYSMLRRL 115

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           + L   A DFFH  L K    +    YL  RGI +     +KLGYAPD   ++R+    +
Sbjct: 116 LALHAEAADFFHWHLMKKPSAQIARDYLKSRGIGADVARAWKLGYAPDEWDAMRDFADSR 175

Query: 177 GFSEEKIIEAGLLI---DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVK 232
           GFS+E+++ +GL+    + +  +  YDRFR R++FPI     +VIAF GR L    ++ K
Sbjct: 176 GFSDEELVASGLVKLRDEENPRSEFYDRFRARVMFPICKDTDEVIAFSGRVLQADAKAAK 235

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           Y+NSPET+LF KG  L+    +   L            +   I+ EG +D+++  + GVQ
Sbjct: 236 YVNSPETMLFKKGAVLFGLNKSKRAL----------IEAKSAIVCEGQLDLITAFEHGVQ 285

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           NV++  GTA TE Q  +L +    +VLCFD D  G +AA +++      L     V    
Sbjct: 286 NVIAPQGTAFTEKQAHILKRFVEEVVLCFDADVAGEKAAERSL---ASLLAENLLVRVAG 342

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           + +GEDPDS IR  G  AF + I  +    D    R      FNTP  + +    +   I
Sbjct: 343 MPQGEDPDSMIRGKGADAFREQIAGARDFFDYQLDRMVAGPDFNTPRGKMQAVRKMAEFI 402

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           + I+D  LR      +  RL+   Q+++                     P     + S +
Sbjct: 403 SLIRDSVLRETVMNRVTQRLEISAQEFVRLLKAPPSKTPDPLSTVTATAPPDPFAEDSTI 462

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           +  L    +LR+AA    L+  P         +   +    + + L   L +D       
Sbjct: 463 R--LLATVALRDAAAREWLLAEPW------DSVLRDQL---DAELLVKILRADIQPDDDA 511

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                   L       +   L+ ++    +           V   +++      R R+  
Sbjct: 512 SVHVFMTTLSATEEAAISGLLEEKMLAHPMTI---------VHDCWRELERRKIRHRV-- 560

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
               E  +   +     + E+ A ++  + ++  ++
Sbjct: 561 ----EATQARLRTPDLPDTER-AEMLKEILDLQKRL 591


>gi|153208759|ref|ZP_01946997.1| DNA primase [Coxiella burnetii 'MSU Goat Q177']
 gi|165918785|ref|ZP_02218871.1| DNA primase [Coxiella burnetii RSA 334]
 gi|120575791|gb|EAX32415.1| DNA primase [Coxiella burnetii 'MSU Goat Q177']
 gi|165917509|gb|EDR36113.1| DNA primase [Coxiella burnetii RSA 334]
          Length = 553

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 168/612 (27%), Positives = 264/612 (43%), Gaps = 62/612 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI+DLL    I  LI   V   +R  N     Y   CPFH EKTPSF  + SK F
Sbjct: 4   RIPQSFIQDLLSRTDIVELIQSRVAIKKRGAN-----YLGLCPFHTEKTPSFTVSSSKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C   G+ +SFL A     F+E+V  LA   G+ +P       K  +I  D   L+
Sbjct: 59  YYCFGCAAHGNAISFLMAFDRMEFLEAVTDLANQLGIEIPHETIGQSKTAEINDD-FILL 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
              + F+   LK +      +YL  RG+     + F +GYAP++  +LR   +      +
Sbjct: 118 TTISRFYQRELKRS--PTAIHYLKSRGLTGETAKQFAIGYAPNAWENLRPFAKNSKTQSQ 175

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +    L+         +DRFR+R++FPIR  RG+VIAFGGR+    +  KY+NSPET L
Sbjct: 176 LVTHGLLVKK---ENRCFDRFRHRIMFPIRDVRGRVIAFGGRS-VGEDLPKYMNSPETPL 231

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KG  LY    A    +   R           ++VEGYMDV+SL Q G+   V++LGTA
Sbjct: 232 FQKGNELYGLHEACKTHRPLPRA----------LIVEGYMDVVSLHQHGITYAVATLGTA 281

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            +   L+ L + +  I+ CFDGDD G +AA++A+   L  +  G  + F+ L +GEDPDS
Sbjct: 282 TSVRHLQKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDS 341

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            I+  G+ AFE  I ++ PL ++ +    +     + D++A         +  +      
Sbjct: 342 LIQKIGREAFENKIDQAPPLSEVFFSHLQKEIPIRSIDDKAAFAKQALEHLRPMPRGIFY 401

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + +  RL     +                           L  +       S +  
Sbjct: 402 QLLLEELAQRLTLDLSEL------------------------DSLTVAPPPMPAASTRVP 437

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                 L  L   P+++    Q++   + ++ ++Q L   +     ++      E+    
Sbjct: 438 SLAYHALSILAQAPSLVS-VIQDMTIPKSEDPQIQFLAKMVL-FLKKRPVANTGELLAF- 494

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
           C      LL QL             T  +  D+    + A+           QKEE  + 
Sbjct: 495 CPESQRRLLAQLAAY---------KTGLSEDDLAAELKDAINRLHEQH----QKEEAFQA 541

Query: 602 IAQVTAKGEAEK 613
           + + + K   ++
Sbjct: 542 LIKASHKETLDE 553


>gi|315607674|ref|ZP_07882668.1| DNA primase [Prevotella buccae ATCC 33574]
 gi|315250610|gb|EFU30605.1| DNA primase [Prevotella buccae ATCC 33574]
          Length = 645

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 152/660 (23%), Positives = 280/660 (42%), Gaps = 67/660 (10%)

Query: 13  IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72
               I +++ +YV   +R  N     Y   CPFH++  PSF  + S+G  +CF+C   G+
Sbjct: 2   DATNIVDVVSEYVSLRKRGVN-----YVGLCPFHNDSHPSFSVSPSRGICHCFTCGKGGN 56

Query: 73  HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIRLIEVATDFFHH 130
            ++FL  L   ++ ++++ LA    + +   +     +K+E  +  +  + E A  +F  
Sbjct: 57  AVNFLMELEQMTYPDALRWLARKYNIEVRERELSDEEKKRENERESMFIVNEWAAKYFQQ 116

Query: 131 SLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
            L    D       Y   RG     I  F+LG+AP+ R +L +   + G+  E +I+ GL
Sbjct: 117 ILHEDVDGMAIGMQYFRSRGFRDDIIRKFQLGFAPNQRDALSQAAVKHGYQAEFLIKTGL 176

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLNSPETILFHKG 245
               D      DRF  R IFP     G+V+AFGGR L    KG S KY+NSP++ ++HK 
Sbjct: 177 CYQRDGG-GLVDRFAGRAIFPWIGVSGKVVAFGGRVLDSRTKGVSQKYVNSPDSEVYHKE 235

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
           + LY  + A   + K             + +VEGY DV+S+ Q G++NVV++ GTAL+ Y
Sbjct: 236 RELYGIYQAKKAIAK----------EDCVYMVEGYTDVISMHQCGIENVVANSGTALSNY 285

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
           Q+R+L + +  IVL +DGD  G+ AA +  D++L     G  +  +LL  G DPDSF R 
Sbjct: 286 QIRMLHRFTNNIVLLYDGDAAGIHAAMRGTDMLLSE---GMNIKVLLLPDGNDPDSFARN 342

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
           +    F+  I E      + +K     +    P +R+E    +   I+ I DQ +R  Y 
Sbjct: 343 HTAADFKSYIEEHQTDF-IQFKTNLLLKGVTDPIKRSEAINSIVESISLITDQIVRAAYI 401

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ-----------SSLVKG 474
                RL       I++ + + R  K   +  + +    +                 ++ 
Sbjct: 402 HDCAQRLGINEATLISQMNRFIRNGKDERQKAEMRSAGLQQAPGEPSVPGAVESRPAIEA 461

Query: 475 KLSKKPSLREAALLLTLINHPA--------------------ILQEQYQELAD--IRYDN 512
             + +    E  ++  +  H                      + Q  Y +L    +++ N
Sbjct: 462 AKTTQEKEVERMIIQMVFRHGDELISVDANGGEGETETVTLPVAQYIYYDLEADGLKFKN 521

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK-QLDRQVRDAGLWSATTEANI 571
           +   ++ +       ++ +       +          ++  +D+      + +  +E   
Sbjct: 522 DTYNRVLTECVDHLDDETFKAENYFLRHHDPEISKLAVEMSVDKVPMPKNVQTQPSE--- 578

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             +R    + + L  R   +    E++++ I  +    + +K   L+     + I  + +
Sbjct: 579 DKLRNEVVRLV-LDFRMNYVEGHLEQLKRDI--LRHADDNDKMMALMEEYKNMQIIRNNL 635


>gi|52842570|ref|YP_096369.1| DNA primase DnaG [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629681|gb|AAU28422.1| DNA primase DnaG [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 581

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 163/618 (26%), Positives = 277/618 (44%), Gaps = 52/618 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    +  LI  YV   +R        + ACCPFH+EKTPSF+    K FY
Sbjct: 9   IPQPFIDDLLNRTDLVELIDGYVPLKKRGN-----SHIACCPFHNEKTPSFNVVAKKQFY 63

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G+ +SF+   L   F ++V+ LA   G+ +P      + K  +   L  L+ 
Sbjct: 64  HCFGCGASGNAISFVMNYLNQGFTDAVETLATRLGLSVPRDGTGEKHKSSLN--LYNLMS 121

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
             + ++   LK    +    YL  RG+     + + LGYAP+  ++L    +    ++ +
Sbjct: 122 EVSQYYQKKLKYN-GQVAIDYLRNRGLSGEIAKRYHLGYAPEGWHNL---EKAFPNNQRE 177

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++  G+LI  D     YDR+RNR++FPI    G+VI FGGR L K +  KYLNSPET+LF
Sbjct: 178 LLSTGMLIKSDEG-KIYDRYRNRIMFPIHDRNGRVIGFGGRVLDKDQKPKYLNSPETVLF 236

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K + LY                 ++ +   II+VEGYMDV++L Q G+ NVV++LGTA 
Sbjct: 237 QKSRELYGLHQ----------VLSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 286

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           + + ++LL K +  ++ CFDGD  G +AA++A++  L HL  G    F+ L    DPDS 
Sbjct: 287 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 346

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +R  GK  F +L+ ++ PL    +   +++ + + P  + +L   +K  +  + +   + 
Sbjct: 347 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMVEGSYKQ 406

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                +  RL  +    +T         K   +    + P                    
Sbjct: 407 LLIDDLS-RLTHIESHRLTNLITDKSESKPEVQAAISRSPL------------------- 446

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
                +  L+ +P I     Q++        E   +   L     ++       + +   
Sbjct: 447 --RIAIALLLQNPEIYSIAIQQINPALLHEQEHH-ILLKLLQQLKDKPNANTATLIEFWR 503

Query: 543 ERGFGELLKQL---DRQVRDAGLWSATTE----ANIVDVRQGYQQALALYKRFRLLSRQK 595
              + EL+ +L   D QV +  L     +        +     +Q +   ++  L   ++
Sbjct: 504 NSSYFELIVKLAAWDHQVPEQELTKEFIDVLLFLQKQNREILIRQYIEKSRKTGLTEAER 563

Query: 596 EEIEKQIAQVTAKGEAEK 613
             ++  + +   + E EK
Sbjct: 564 LSLQNLLKERHGQAEIEK 581


>gi|229815175|ref|ZP_04445511.1| hypothetical protein COLINT_02220 [Collinsella intestinalis DSM
           13280]
 gi|229809185|gb|EEP44951.1| hypothetical protein COLINT_02220 [Collinsella intestinalis DSM
           13280]
          Length = 663

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 173/694 (24%), Positives = 294/694 (42%), Gaps = 89/694 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D    +     +  L+ + V+   R       D W CCPFH EKTPSFH   +   +
Sbjct: 2   ISEDDKNKVRDATDLVALVSETVELRPRGN----TDLWGCCPFHGEKTPSFHVIPATQVW 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD  +++    G SF ES++ LA  AG+ L   D   ++    +  L+ + E
Sbjct: 58  HCFGCGEGGDAFTYVMKREGLSFPESIRYLADRAGIELEE-DHSFKRSGTKRNRLVEVCE 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               F+H  L   +D R   Y  ER +D+     ++LG+AP     L  HL  KGF+ ++
Sbjct: 117 ETCSFYHTLLMRGKDARGRDYCKERELDAETCRKYRLGFAP-GHGMLVRHLGSKGFTPQE 175

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETIL 241
           +I+A +           DRF +R++FPI   +G+ IAFGGR L K ++  KYLNS ET +
Sbjct: 176 MIDANVAFRSRGG-GLVDRFFDRVMFPIFDEQGRCIAFGGRALDKEKTNAKYLNSSETPI 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHKGKNLY F  A +++           +++  I+VEGY+  +S  +AG++N+V+ LGTA
Sbjct: 235 FHKGKNLYGFNWAKDHI----------VNNNEAIVVEGYISAMSCWKAGIENIVAVLGTA 284

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE  ++ L + + +IV  FDGD  G +AA +A+            +  V+L  G+DPD 
Sbjct: 285 LTENHVKTLMRFTKKIVYMFDGDAAGQKAARRAVQ---FIEKDDLDLRCVILPNGQDPDD 341

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           F+R  G  A  +L+  S+PL+D ++ +  E    +TP  RA+        I  ++   + 
Sbjct: 342 FVRANGGEALRELLDNSIPLMDFVFGKLEEESDISTPGGRAKAMRSALELIYPLRASYMI 401

Query: 422 YYYSQAIRDRLQQL-----------FQKYITEHSGYGRYWKKNARHRDQK---------- 460
             Y   I DRL              F++         R  K+  R +             
Sbjct: 402 DSYYMQIADRLGLDVDTIRASAGKVFREVQQREETARRREKQRERAQSSPDTQQAAGAPA 461

Query: 461 ------------------GPSQRLMQSSLVKGKLSKKPSL-------REA-------ALL 488
                              P +  +Q + V  +    P          E         LL
Sbjct: 462 PAPSGYDEVPYEEVPYDYEPVEDPVQGAPVPTEADAGPDAGNGLLTDLERRQLACEHELL 521

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             L  +P   +   + + ++ + +   + +   + +              + +C      
Sbjct: 522 TLLTTYPDSFRVYAERITEVEWVDARSETIAWSILATPEGTAPADAMAAARTVCPE---- 577

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                  Q+  +GL SAT++       +     L LY       R+ +  + ++    + 
Sbjct: 578 -----AAQLVGSGLLSATSKHPTETNIEFLLDTLELY----TTRRRMKTAQARLRSNRSM 628

Query: 609 GEAEKTAILISILHEVHIQIHQI-ESQEAMIEGF 641
              E+  + I    +   +I ++ ++ E + + F
Sbjct: 629 SSDERRELAIQATRDA-ARIRELEQAVEGIADPF 661


>gi|284929748|ref|YP_003422270.1| DNA primase [cyanobacterium UCYN-A]
 gi|284810192|gb|ADB95889.1| DNA primase [cyanobacterium UCYN-A]
          Length = 649

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 138/652 (21%), Positives = 279/652 (42%), Gaps = 35/652 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P D ++++     I  +I ++V   +R  N     Y   CPFH+EKTPSF  N  K  
Sbjct: 5   RIPSDTLEEIKERANIYEVISEHVVLKKRGKN-----YVGLCPFHNEKTPSFSVNPDKQL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EKKEKIQTDL 117
           +YCF C   G+ + FL  L    F + V  LA    +P+  ++ +     ++K  +Q  L
Sbjct: 60  FYCFGCGAGGNAIKFLMELKKEPFHQVVLELAKQYKIPIKELESENTKTLQEKISLQDQL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175
             ++  + +++ H L      +   Y +++R +    I  F +GY+P+   +L  + +  
Sbjct: 120 YEILATSANYYEHLLHEPSGTQALDYLINKRRLKLETISKFNIGYSPEGWETLYSYLVEY 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K +S + + + G++   +     YD FR R++ PI+  +G+++AFGGR+L   +  KYLN
Sbjct: 180 KKYSTDLLEQTGMIKRRNKGNGYYDTFRGRIMIPIKDVQGRIVAFGGRSL-NNQEPKYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LF K K L+    +   ++          +    I+VEGY DV+SL +AG+ N V
Sbjct: 239 SPETALFSKSKILFALDQSYKNIR----------NLDQAIVVEGYFDVISLHEAGINNTV 288

Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVL 352
           +SLGT  ++ QLR L + +   +IV  FD D+ G++A  + I  +   +  G  ++  + 
Sbjct: 289 ASLGTTFSKAQLRKLLRYTDSKQIVFNFDADNAGIKATQRMITEIESLVYSGQVQLKILN 348

Query: 353 LSRGEDPDSF--IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           L  G+D D F          + +LI  +        ++   N+     D   ++   + +
Sbjct: 349 LPNGKDADEFIQFNQNSTEQYYELISNAPLWFSWQIQQILLNKDLKRADHFEKIVKEMID 408

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ + D   R YY +   + L Q   + I  +    +        +             
Sbjct: 409 LLSKLSDYNKREYYIRHCSEVLSQGDARLIPIYLKNFQLQLAKPIAKQTNNEKSGKFTKV 468

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQKLWSFLFSDFVE 528
            +  +  +     E  LL   + +P    +  ++L   ++ +   E + +W+ +      
Sbjct: 469 NILLE-DQLLKEAENNLLKVYLRYPEYRSQISKDLESKNLFFSVQEHRVIWAEILEFEDN 527

Query: 529 ---QKYFLPEEIHQRLCERGFGELLKQL-DRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
               +     ++  +L E  +   L ++   Q+ +        + +I  +    + +L  
Sbjct: 528 HQYDEKIDKYQLIYKLQETIWDSSLTEICINQILNFSELEQHEDNDIERLDLIIKASLIF 587

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            ++   L +     + +   +    +       ++       +I  ++S ++
Sbjct: 588 LEKA-SLKKYCYYCKTKYQMIDKNKDLVNFEYYLNEYIASKQKILLLQSLQS 638


>gi|292670110|ref|ZP_06603536.1| DNA primase [Selenomonas noxia ATCC 43541]
 gi|292648298|gb|EFF66270.1| DNA primase [Selenomonas noxia ATCC 43541]
          Length = 593

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 162/633 (25%), Positives = 266/633 (42%), Gaps = 52/633 (8%)

Query: 1   MNYP--RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M  P    F++ +     I  ++  YV   R+        YW CCPFH+EKT SF    +
Sbjct: 1   MRDPRMEAFVQQVRAQTDILAVVQGYVSLKRKGN-----RYWGCCPFHNEKTASFSVVPA 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--D 116
           +GF+YCF CH  GD   F+S +   +  E+++R A   G+PLP       ++ +++   D
Sbjct: 56  EGFFYCFGCHAGGDAFKFISLMEHITPFEAIKRQAEQLGIPLPERKRDAREEARLRALDD 115

Query: 117 LIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L R   +A DFFH  L           YL  RGI   AIE ++LG+APD+   L +  ++
Sbjct: 116 LRRANALARDFFHSCLTVTRYGAAGKAYLAGRGITDEAIERYQLGFAPDAWSKLSDAFKK 175

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +G SE+ +++AGL    +     YDRFRNR+I PI   RG+V+ FGGR L      KYLN
Sbjct: 176 RGISEKILVDAGLAAVRERGGGVYDRFRNRVIIPIADERGRVVGFGGRAL-GDAKPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           + ET +F+K K L+    A   +                I+VEGYMD ++  +AG  NVV
Sbjct: 235 TAETPVFNKRKLLFGLDRAHRAIA----------QEGCAIVVEGYMDAIAAWEAGAANVV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGT+ T     LL + +PRIV C+D D  G  A  +A+  V         V  +LL  
Sbjct: 285 ATLGTSFTSDHAALLLRRAPRIVFCYDSDAAGQEATLRALAAVRGRTA---EVRVLLLPD 341

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPD ++R +G  AF  L+  ++P  +    R       +  D R      +   +  +
Sbjct: 342 GKDPDEYVRTHGAEAFRALVETAVPAPEYRL-RHVRAHMADGIDGRRAALAEMLPVLADL 400

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            D+  R  Y +     L             Y R  +           +           +
Sbjct: 401 -DEVARGAYMRRTAAELFLDEGVVADALRSYLRQGR--------PRETSVQTPQRTPTRQ 451

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                      L+  +     +L      +    + ++ L +++  +     +       
Sbjct: 452 PGDVLRRAGRELIAAVWRDADLLMRILSVVPSDDFPDDFLGEIFRSMERRLAQGGALD-A 510

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +    L      E+ + L    R A                  ++AL   +R   L++Q 
Sbjct: 511 DFIAALPADAGTEISRALVEDGRTA---------------DSCREALGTLRRAY-LTQQL 554

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                +  ++  +G+A     L + +  +  ++
Sbjct: 555 ARHTHRAEEMMQEGKAAYIDEL-NQVKRIQDEL 586


>gi|331001173|ref|ZP_08324800.1| DNA primase [Parasutterella excrementihominis YIT 11859]
 gi|329569105|gb|EGG50897.1| DNA primase [Parasutterella excrementihominis YIT 11859]
          Length = 649

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 167/658 (25%), Positives = 283/658 (43%), Gaps = 49/658 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             + FIK+LL    I  ++ + V   ++  +A     WACCPFH+EK+PSF  N  +GFY
Sbjct: 2   IAQSFIKELLDRADIYEVVNRRVPLQQKGASA-----WACCPFHNEKSPSFSVNRERGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G+ +SFL       F+++V++LA+   + +   +    K +  +  L  +++
Sbjct: 57  HCFGCGEHGNAISFLMKYENLPFVDAVEKLASEFSMQV-RYEGGAPKPKSGKPRLSEIMQ 115

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A +F+     +  DK    YL +RG+    IE F +G++PD+ ++L             
Sbjct: 116 RAMEFYRDKFNS--DKFSQDYLHDRGLKDETIERFGIGFSPDAWHNLDAVFSPDLKPLLL 173

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                       S   YD FRNRL+FPIR+ RGQVIAF  RT+  GE  KY+N+ +T +F
Sbjct: 174 EAGLQ---RTGQSGNVYDFFRNRLMFPIRNIRGQVIAFSARTM-IGEEPKYINTGDTPIF 229

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG  ++  + A   +Q   R          +I+VEG MDV+ L QAG     + LGTA+
Sbjct: 230 TKGSEVFGLYEARKSIQDKKR----------VIVVEGQMDVIQLSQAGFGEACAPLGTAI 279

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
               +  L K++  ++  FDGD  G +AA +A+DL L  L    +V+FV L  GEDPDS 
Sbjct: 280 RAEHIERLLKMTDHVIFSFDGDAAGRKAAKRAMDLSLPLLDDAQKVSFVFLPEGEDPDSL 339

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++  G  AFE+++ ++LPL   L +  ++       ++R          +   K   LR 
Sbjct: 340 VKKSGAPAFEEMLKKALPLSSYLIEALSQGLDLAVLEDRNAFIEEASPLVRKTKSPLLRD 399

Query: 423 YYSQAI--------RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
              + +         D L++ F   +   +   R      +         R     +   
Sbjct: 400 GLIERLSTAVGYKNSDELRKYFGFPVLPPAAPQRPSGFGNQRYSFGRGYDRYKTPRIPTS 459

Query: 475 KLSKKPSLREAALLLTL---INHPAILQEQYQELADI--RYDNNELQKLWSFLFSDFVEQ 529
                P   +A L+  L   +  P +  E    LA+     ++   + L+  +     E 
Sbjct: 460 TGRSIPPKADAPLMALLRNFLRFPQLALEFEGMLAEQLSESNSPVSELLFKVIERVTHED 519

Query: 530 KY-FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN--------IVDVRQGYQQ 580
           +      +    L         K++D        +      +           + Q   +
Sbjct: 520 ESGHTLAQFLADLPGPADENFEKEMDSARSMISTFLLEEGIDSVIRKGLSQGQILQTPLE 579

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI-----LISILHEVHIQIHQIES 633
           A  L  R  LL  +   +E Q   ++ KG  +         L+ +  ++  +I  I++
Sbjct: 580 AARLECRRILLQMELNRVEVQRRALSTKGNLDDADRKVFRDLMQLDQDLQKEIKSIDA 637


>gi|288574623|ref|ZP_06392980.1| DNA primase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570364|gb|EFC91921.1| DNA primase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 582

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 157/624 (25%), Positives = 261/624 (41%), Gaps = 51/624 (8%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           D +  +   + + +++G YV   R   N     Y   CPFH+EKTPSF+ +  +  ++CF
Sbjct: 3   DDVDRIKSRLDVVDIVGDYVKLTRSGRN-----YKGLCPFHEEKTPSFYVSQERQSWHCF 57

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
            C   GD  SF+    G SF E++  LA  AG+ +             +  L  ++E A 
Sbjct: 58  GCGKGGDIFSFVMEKEGLSFPEALSLLARRAGIEIESYRRSD---GSGKKTLFDIMEEAC 114

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
             F   +   +      YLD R I       F+LG++P S   + +++++KG S +    
Sbjct: 115 SLFRTCMNGDQGSVPRGYLDRRMIPPQVRSSFELGWSPPSWSFMVQYIKKKGISLKDAER 174

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
            GL+     +   YDRFR R+IFPIR   G+++AFGGR +  G+  KYLNSPET ++ K 
Sbjct: 175 CGLV--LRGNRGPYDRFRGRVIFPIRDITGRLVAFGGR-IVDGDGAKYLNSPETEIYSKR 231

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
           + LY    A   ++          +    I+VEGYMD L L   G    V++LGTALTE 
Sbjct: 232 RTLYLIDKAKGAIR----------NGGHSIIVEGYMDALRLHMEGYPQTVATLGTALTED 281

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
           Q  +L +L+  + +C+D D  G  AA   I  +      G  V  V L  G+DPD  +R 
Sbjct: 282 QATILKRLADEVFICYDADQAGQTAA---IRGMYVLQQAGLSVKVVALPEGKDPDDLLRS 338

Query: 366 YGKTA-FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
            G  A F   + E+LPLV+   K  +     +    R      L   +++I D      Y
Sbjct: 339 DGGKARFNDCLKEALPLVEHHIKLLSPAIKDDRT--RKSAIHDLLEGLSNI-DVTDVSPY 395

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             ++   L     + +          +K  R  D +     L        ++   P   E
Sbjct: 396 LPSLAALLGIRDFEVLDALERVRSKRRKTDRSFDTEEIPSSLPDEGQQSQEMPPLP---E 452

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            AL+  L +   + ++           +  L+ + S +           P  + +R  E 
Sbjct: 453 IALISLLWSECDLRRKCDTREVVELLSDPRLKLMASSIM------MGESPSSLEKRWLEM 506

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
           G    L+ L R       ++  ++         ++    L  R +    +  E+  ++ +
Sbjct: 507 GETFQLRVLARGGAYLDEFTQNSDWK-------WRHFCHLLYRQKG-QMRYNELRVKMLK 558

Query: 605 VTAKGEAEKTAILISILHEVHIQI 628
                  E T   I  + ++  ++
Sbjct: 559 G------EATTREIREMEDLRQKL 576


>gi|71891847|ref|YP_277576.1| DNA primase [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71795953|gb|AAZ40704.1| DNA primase [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 581

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 156/622 (25%), Positives = 286/622 (45%), Gaps = 48/622 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I +L+    I +LI Q V   ++  N     + ACCPFH EK PSF  N  K F
Sbjct: 3   RIPNTVINELISRTNIVDLISQRVPLKKQGKN-----FLACCPFHTEKHPSFTVNIEKQF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCFSC   G+ + FL      +F+E+++ L+ + G+ +       ++   ++ +L +L+
Sbjct: 58  YYCFSCGSHGNVIDFLMHYDRLTFLEAIKELSIMHGISIEKNLNVCKRNNYLKNNLYQLM 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
                ++ + L   +    + YL  RG+++  I+ F +G+AP    ++ +      + ++
Sbjct: 118 NKLCAYYKNILTQKKYLYAYKYLKNRGLNTKTIDDFNIGFAPPRWNNIIQKFGLTLYDQK 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            + ++G+LI  +     YDRFR+RLIFPIR   G+++AFGGR +++ +  KYLNSP+T +
Sbjct: 178 LLDQSGMLISSNTKKYKYDRFRDRLIFPIRDITGRIVAFGGRVITQNKIPKYLNSPDTEI 237

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K ++LY  + A           ++  + S I+LVEGY+DV++L Q G+   V++LGT+
Sbjct: 238 FKKSQHLYGLYEAR----------MKHKNLSCILLVEGYIDVITLTQFGINYAVAALGTS 287

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T+  +RLL+ ++ +I+ C+DGD  G +AA++ ++  L +L    +++F  L  GEDPD+
Sbjct: 288 TTDNHIRLLYSITDQIICCYDGDYAGKKAAWRTLNTALPYLTDERQIHFAFLPHGEDPDT 347

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            IR  GK  F K + ++  L + L++  ++  +  T   R +L   +   +  I  Q L+
Sbjct: 348 LIRKIGKDNFLKRLTQTQDLSNFLFETLSKKTNLQTLSGRVKLSSLILPILKKIPGQTLK 407

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               Q + +++  L    +++          N  +R     S                  
Sbjct: 408 LCLLQQLGNKIGILDDNKLSQLLTRKPVTYTNKINRCYVNNSIGH--------------- 452

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                L+  LI +P + +         +   N++      L             ++ +  
Sbjct: 453 ----ILVGLLIQNPRLSKLVPSVQGLEQLKQNDIVMFID-LIQICKTYPISTSAQLLEHY 507

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
               F     +L+       L +         +   +  AL       L  RQ    E  
Sbjct: 508 RGNKF---FSKLESLAYWNHLITN------DMIETTFVDALTKLYNLTLEKRQ----ELL 554

Query: 602 IAQVTAKGEAEKTAILISILHE 623
           IA+    G   +    + +L++
Sbjct: 555 IARDRTSGLTTQERQELWLLNQ 576


>gi|222152853|ref|YP_002562030.1| DNA primase [Streptococcus uberis 0140J]
 gi|222113666|emb|CAR41592.1| DNA primase [Streptococcus uberis 0140J]
          Length = 603

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 150/636 (23%), Positives = 267/636 (41%), Gaps = 51/636 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKETISQIKNSVNIVDVIGEVVALSRSGR-----HYLGLCPFHKEKTPSFNVIEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDLIR 119
           ++CF C   GD   F+       F+ESVQ LA  +G+ +  + P  +     +    L+ 
Sbjct: 66  FHCFGCGKSGDVFKFIEEYRQVPFLESVQILAERSGLAIEPLTPNQQASSSKRPHQLLLD 125

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + E A  F+H  L      ++   YL +RG+D   I  FK+G AP              +
Sbjct: 126 IHEDAQKFYHAVLMTTKIGQKARDYLYQRGLDDDLIAHFKIGLAPAEMD-YLYRSLSPKY 184

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234
            E+++  +GL    ++S T YD FRNR++FP+   +G  IAF GR  ++ +      KY 
Sbjct: 185 GEKELSASGLFNLSESSNTIYDAFRNRIMFPLTDDKGNTIAFSGRIWTEEDQAKKMAKYK 244

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS  T+LF+K    Y+   A   + K             + L+EG+MDV++  +AG +N 
Sbjct: 245 NSRATVLFNKSFEFYHLDKAKPVIAKK----------HEVFLMEGFMDVIAAYRAGHENA 294

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           ++S+GTALT   ++ L  L+ +++L +DGDD G +A  K+++L+    +       V + 
Sbjct: 295 IASMGTALTNEHVQHLKSLTKKVILTYDGDDAGQKAIAKSLELLKDFQVE-----IVRIP 349

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD FI+        +L+  S            +  + +    +      +   I  
Sbjct: 350 HKMDPDEFIQKNSPEDLSQLLEHSRISDVEFLIEFLKPENMDNLQSQIAYVEQIGRIIAA 409

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                 +  Y   + D L       + +     R  ++  R      P  +++  +L   
Sbjct: 410 APSITAQNSYINRVADLLPDFDYLQVEQTVNSYRLEERQQRQGSALSPVTKMV--TLPLS 467

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K     +  E  LL  LI+H  +L E   +  +  +D  +LQ+L+  +     E      
Sbjct: 468 KNLSAIAKAENQLLHRLIHHDYLLNEFRHK-EEFYFDTPQLQQLY-HILKTNGEISSLDL 525

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-SR 593
             + + +    +          V +  L    +   I D+         L KR +LL  R
Sbjct: 526 STLSEDVNHAYYR---------VLEENLPPEVSHGEIDDI---------LRKRQKLLNER 567

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             ++  KQ+ + +  G+ +    ++  L     ++ 
Sbjct: 568 DIQKQGKQVRESSNSGDHQLALEVLENLIAQKRKME 603


>gi|163848458|ref|YP_001636502.1| DNA primase [Chloroflexus aurantiacus J-10-fl]
 gi|222526386|ref|YP_002570857.1| DNA primase [Chloroflexus sp. Y-400-fl]
 gi|163669747|gb|ABY36113.1| DNA primase [Chloroflexus aurantiacus J-10-fl]
 gi|222450265|gb|ACM54531.1| DNA primase [Chloroflexus sp. Y-400-fl]
          Length = 655

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 156/666 (23%), Positives = 286/666 (42%), Gaps = 70/666 (10%)

Query: 6   DFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYY 63
             I D+  +I I +LI    V   R         +   CPFH + +TP+FH       +Y
Sbjct: 2   SVIDDIKANIDIVDLINSMGVGLRRSGR-----SFVGFCPFHPNTRTPAFHVYPDTQSFY 56

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF CH  G    F+    G  F  +++ LAA AG+ L   +    +++  +  L+ +  +
Sbjct: 57  CFGCHASGTAFDFVMRKQGLDFKGALELLAARAGIRLEPKNDAQRQEDARRARLLEINGI 116

Query: 124 ATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFSEE 181
           A  +F++ L N +R +    Y+  RGI+  AI+ F++GY+ D    L  +   +KG+S E
Sbjct: 117 AARYFNYVLLNLSRGEPGRDYIARRGINQDAIDAFQIGYSLDDWNHLFSYLHEKKGYSVE 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +I AGL+I        YDRFRNR+IFPIR+ RG+VI FGGR L      KYLN+PET L
Sbjct: 177 DLITAGLVI--PGERGPYDRFRNRIIFPIRNIRGEVIGFGGRAL-GDAQPKYLNTPETPL 233

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K + LY    A + ++ + R           I+VEGY+DV++  Q G +NVV+ LGTA
Sbjct: 234 FKKSEVLYGLDLARDAIRTANRA----------IVVEGYVDVITAHQHGFRNVVAPLGTA 283

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL------------------I 343
           L++  +  L +L+ ++ L  D D  G +A  + ++ +                       
Sbjct: 284 LSKAHINQLKRLTDQVYLALDADAAGQKATLRGLETIRTTSEEEGEGRMVTTAQGIVRLE 343

Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
               +  + L  G DPD  I       ++ L+ ++ P++D   +  T     + P ++ +
Sbjct: 344 NDVTIRIIRLPAGRDPDEVI-AADPQLWQTLVDQAAPVMDFYLEAYTAGLDMHDPTQQRQ 402

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
               +   ++ + D   +  Y   +        +  +       +  +++ R+R  +  +
Sbjct: 403 ALERIIPLLSEL-DGAAQRVYVARVEQLTGVRSELIVDLIRTRLQPTRRSERNRTSRPSA 461

Query: 464 QRLMQSSLVKGKLSKKPSLR-EAALLLTLINHPAILQEQYQELADIR------------- 509
             L  +S V      +     EA LL   + +P++       L +++             
Sbjct: 462 PPLPATSPVSTTPLDEHRRHTEAYLLALALRYPSVNLAIENLLENLKKQHRDAGALFGAG 521

Query: 510 ----YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
                +    Q +W    +  +E +   PE +   +      + L +       A L   
Sbjct: 522 LEDLLEEPLHQAIWQAYLATPLELRPTDPESLQFWV------DTLGEPLSSEAKALLEVL 575

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
               + V  R   +Q   L ++   +  +    ++++ ++T   + E+   ++  + ++ 
Sbjct: 576 NRRPDDVRFRHEAEQCARLIRKA-QIMARIRRYKERLDELT---DEEEIQQVLQHIRDLS 631

Query: 626 IQIHQI 631
               QI
Sbjct: 632 SYAEQI 637


>gi|148359901|ref|YP_001251108.1| DNA primase DnaG [Legionella pneumophila str. Corby]
 gi|296107952|ref|YP_003619653.1| DNA primase DnaG [Legionella pneumophila 2300/99 Alcoy]
 gi|148281674|gb|ABQ55762.1| DNA primase DnaG [Legionella pneumophila str. Corby]
 gi|295649854|gb|ADG25701.1| DNA primase DnaG [Legionella pneumophila 2300/99 Alcoy]
          Length = 577

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 163/618 (26%), Positives = 277/618 (44%), Gaps = 52/618 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    +  LI  YV   +R        + ACCPFH+EKTPSF+    K FY
Sbjct: 5   IPQPFIDDLLNRTDLVELIDGYVPLKKRGN-----SHIACCPFHNEKTPSFNVVAKKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G+ +SF+   L   F ++V+ LA   G+ +P      + K  +   L  L+ 
Sbjct: 60  HCFGCGASGNAISFVMNYLNQGFTDAVETLATRLGLSVPRDGTGEKHKSSLN--LYNLMS 117

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
             + ++   LK    +    YL  RG+     + + LGYAP+  ++L    +    ++ +
Sbjct: 118 EVSQYYQKKLKYN-GQTAIEYLRNRGLSGEIAKRYHLGYAPEGWHNL---EKAFPNNQRE 173

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++  G+LI  D     YDR+RNR++FPI    G+VI FGGR L K +  KYLNSPET+LF
Sbjct: 174 LLSTGMLIKSDEG-KIYDRYRNRIMFPIHDRNGRVIGFGGRVLDKDQKPKYLNSPETVLF 232

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K + LY                 ++ +   II+VEGYMDV++L Q G+ NVV++LGTA 
Sbjct: 233 QKSRELYGLHQ----------ILSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 282

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           + + ++LL K +  ++ CFDGD  G +AA++A++  L HL  G    F+ L    DPDS 
Sbjct: 283 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 342

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +R  GK  F +L+ ++ PL    +   +++ + + P  + +L   +K  +  + +   + 
Sbjct: 343 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMVEGSYKQ 402

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                +  RL  +    +T         K   +    + P                    
Sbjct: 403 LLIDDLA-RLTHIESHRLTNLITDKSESKPEVQAAISRSPL------------------- 442

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
                +  L+ +P I     Q++        E   +   L     ++       + +   
Sbjct: 443 --RIAIALLLQNPEIYSIAIQQINPALLHEQEHH-ILLKLLQQLKDKPNANTATLIEFWR 499

Query: 543 ERGFGELLKQL---DRQVRDAGLWSATTE----ANIVDVRQGYQQALALYKRFRLLSRQK 595
              + EL+ +L   D QV +  L     +        +     +Q +   ++  L   ++
Sbjct: 500 NSSYFELIVKLAAWDHQVPEQELTKEFIDVLLFLQKQNREILIRQYIEKSRKTGLTEAER 559

Query: 596 EEIEKQIAQVTAKGEAEK 613
             ++  + +   + E EK
Sbjct: 560 LSLQNLLKERHGQAEIEK 577


>gi|161829861|ref|YP_001597430.1| DNA primase [Coxiella burnetii RSA 331]
 gi|161761728|gb|ABX77370.1| DNA primase [Coxiella burnetii RSA 331]
          Length = 553

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 168/612 (27%), Positives = 264/612 (43%), Gaps = 62/612 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI+DLL    I  LI   V   +R  N     Y   CPFH EKTPSF  + SK F
Sbjct: 4   RIPQSFIQDLLSRTDIVELIQSRVAIKKRGAN-----YLGLCPFHTEKTPSFTVSSSKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C   G+ +SFL A     F+E+V  LA   G+ +P       K  +I  D   L+
Sbjct: 59  YYCFGCAAHGNAISFLMAFDRMEFLEAVTDLANQLGIEIPHETIGQSKTAEINDD-FVLL 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
              + F+   LK +      +YL  RG+     + F +GYAP++  +LR   +      +
Sbjct: 118 TTISRFYQRELKRS--PTAIHYLKSRGLTGETAKQFAIGYAPNAWENLRPFAKNSKTQSQ 175

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +    L+         +DRFR+R++FPIR  RG+VIAFGGR+    +  KY+NSPET L
Sbjct: 176 LVTHGLLVKK---ENRCFDRFRHRIMFPIRDVRGRVIAFGGRS-VGEDLPKYMNSPETPL 231

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KG  LY    A    +   R           ++VEGYMDV+SL Q G+   V++LGTA
Sbjct: 232 FQKGNELYGLHEACKTHRPLPRA----------LIVEGYMDVVSLHQHGITYAVATLGTA 281

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            +   L+ L + +  I+ CFDGDD G +AA++A+   L  +  G  + F+ L +GEDPDS
Sbjct: 282 TSVRHLQKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDS 341

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            I+  G+ AFE  I ++ PL ++ +    +     + D++A         +  +      
Sbjct: 342 LIQKIGREAFENKIDQAPPLSEVFFSHLQKEIPIRSIDDKAAFAKQALEHLRPMPRGIFY 401

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + +  RL     +                           L  +       S +  
Sbjct: 402 QLLLEELAQRLTLDLSEL------------------------DSLTVAPPPMPAASTRVP 437

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                 L  L   P+++    Q++   + ++ ++Q L   +     ++      E+    
Sbjct: 438 SLAYHALSILAQAPSLVS-VIQDMTIPKSEDPQIQFLAKMVL-FLKKRPVANTGELLAF- 494

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
           C      LL QL             T  +  D+    + A+           QKEE  + 
Sbjct: 495 CPESQRRLLAQLAAY---------KTGLSEDDLAAELKDAINRLHEQH----QKEEAFQA 541

Query: 602 IAQVTAKGEAEK 613
           + + + K   ++
Sbjct: 542 LIKASHKETLDE 553


>gi|170017100|ref|YP_001728019.1| DNA primase DnaG [Leuconostoc citreum KM20]
 gi|169803957|gb|ACA82575.1| DNA primase DnaG [Leuconostoc citreum KM20]
          Length = 620

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 144/648 (22%), Positives = 263/648 (40%), Gaps = 50/648 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI ++   + I ++IGQY    +R        +   CPFHD++ PS    ++K  
Sbjct: 4   RIPESFIAEVRQKVNIVDVIGQYTQLVKRGRQ-----WTGSCPFHDDRHPSLFVEENKQV 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           + CFSC   G   SF+    G S+ E++  LA    + +          + +     +  
Sbjct: 59  FNCFSCGRSGSVFSFVMEKEGMSYPEAIISLAESVDMQVDSQFVADATPRIDPKTQAIFD 118

Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           L   A   + H L++        HY  D+R +    I+ F +G+ PD    L ++   + 
Sbjct: 119 LQAAAQRLYQHILQHTTSGETALHYLHDKRQLTDETIKQFGIGFVPDD-NVLLQYAETQN 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S E ++ + L    ++     DRF  R+++PIRS+ GQV+ F GRTL    S+KY+NSP
Sbjct: 178 ISREIMLASDLF-LSNDEGRLRDRFAGRVVWPIRSTNGQVVGFSGRTLDSKNSIKYMNSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+  F+KG+ LYNF  A   ++K          +   ++ EG+MDV+S   AG    V++
Sbjct: 237 ESPFFNKGQILYNFDLAKGDIRK----------TGTAMIFEGFMDVISSEIAGRPAAVAT 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALT+  +R L +L+ RI+L +DGD+ G  AA ++I L+         +  V L    
Sbjct: 287 MGTALTQDHVRQLTRLAKRILLVYDGDEAGQNAAKRSIHLIQAQ-KQDVDIGIVHLPDDL 345

Query: 358 DPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           DPD      GK    + L       +  L +    N++ +   +           +    
Sbjct: 346 DPDEVRVQKGKEVLKQALDQNIQTPIAFLIQAARYNKNLSNQTQYLAFLGEAMTILQQ-A 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--- 473
               +      I +      Q  I +     +   K   +R  +   Q+  Q + ++   
Sbjct: 405 TPVEQDMQLTRIANEFGTSKQALIEQLKQTPKRQSKETVNRTSQHFHQQSPQITDMEEPP 464

Query: 474 -----------GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
                       + + +    E AL++ +I  P +L++         + + E Q L   +
Sbjct: 465 LTGDDAAFSSNQQSTNQIEQAERALIMAMIKSPQVLEQVSDT-TGFAFVHPEYQLLMMLI 523

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +Q +F   +    + +    + +  +DR   D  +                   L
Sbjct: 524 AIYQKQQAHFDLAQFMDFIQKPELNQRILAIDRTFGDLAVEPG-----------AISDYL 572

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            +      +  Q + +++ I     + +  K   L + L  +  Q ++
Sbjct: 573 RIIMHDAPVEAQIKTLQQAIDVAKQQHDDNKLLQLTTELINIKKQRNK 620


>gi|255530191|ref|YP_003090563.1| DNA primase [Pedobacter heparinus DSM 2366]
 gi|255343175|gb|ACU02501.1| DNA primase [Pedobacter heparinus DSM 2366]
          Length = 660

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 155/670 (23%), Positives = 273/670 (40%), Gaps = 61/670 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I  ++    I  ++G +V   +R T          CPFH+EKTPSF+ + +KG Y
Sbjct: 2   INQDTINKIMDTARIEEVVGDFVALKKRGT-----SLIGNCPFHNEKTPSFNVSVTKGIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRL 120
            CF C   GD + F+      S+ E+++ LA    + +      P+  + +  +  L  +
Sbjct: 57  KCFGCGKGGDAVHFIMDHEKYSYPEALKYLAQKYNIEVEETVQSPQNIEAQNARESLYIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +F + L    D R     Y  ERG     ++ F+LGY+PD   +L ++    G 
Sbjct: 117 SEYAAGYFANELWTGNDGRAIGLSYFKERGFREDILKKFQLGYSPDVWDALIQNAVGAGH 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
            EE + + GL I  D     YDRFR R++FPI +  G+VI FGGRTL   ++  KY+NSP
Sbjct: 177 KEEYLEKTGLAIRNDKG-KLYDRFRGRVMFPIHNFTGRVIGFGGRTLKTDKNVPKYVNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK   LY  + A   ++                LVEGY DVL++ QAG++NVV+S
Sbjct: 236 ESDIYHKSNVLYGLYHAKKAIR----------DQDNCYLVEGYADVLAVHQAGIENVVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GT+LT  Q+RL+ + +  + + +DGD  G++A+ + +D+    L  G  V  VL   G 
Sbjct: 286 SGTSLTTEQIRLIGRFTENVTILYDGDAAGIKASLRGLDM---ILEEGLNVKVVLFPDGH 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS++   G   F++ I  +     +         +   P +RA +   +   I  I D
Sbjct: 343 DPDSYMHHVGSGEFKQYIEGNRRDFILYKATILLKEAGTDPIKRAGIIRDIIESIAKIPD 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA-----------------RHRDQK 460
                 + +     LQ   +  ++E +       K A                   +  +
Sbjct: 403 DIKAAVFIRECSSLLQVEERILLSELNKMRAAKLKKASGGSSSPQSQSFQQHQQAQQHAE 462

Query: 461 GPSQRLMQSSLVKGKLSKKPS-----LREAALLLTLINHPA------------ILQEQYQ 503
           GP   L ++         + +     ++E  ++  L+ +              I     Q
Sbjct: 463 GPPDNLFENPGPYEDPGPETAASNDLIQEQEIVRLLLAYGHELVNWDGIDNMYIGSFIIQ 522

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
            L D+ +++     +      +       +  +  +          +         +  W
Sbjct: 523 NLTDVVFEDQLCSGIIENYREEIENGHLPVASQFIKSPDRNIAELAITLSTSPYILSENW 582

Query: 564 SATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
                  + D     +  +     + +   ++     I K+I   T     E       +
Sbjct: 583 ENKHNIYVRDETVNLKATILGGLFHLKKTKIAGILSAISKEIKTETDPVNLEILMQRFVL 642

Query: 621 LHEVHIQIHQ 630
           +  V  +I +
Sbjct: 643 MKGVEREISK 652


>gi|319953724|ref|YP_004164991.1| DNA primase [Cellulophaga algicola DSM 14237]
 gi|319422384|gb|ADV49493.1| DNA primase [Cellulophaga algicola DSM 14237]
          Length = 661

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 151/664 (22%), Positives = 262/664 (39%), Gaps = 64/664 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +     +  +IG YV   +  +N     +    PF DE++PSF  +  K  +
Sbjct: 2   ISKSTIDKVYETARLEEVIGDYVQLKKSGSN-----FKGLSPFTDERSPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA    + +   +   E+KE+   +  +  +
Sbjct: 57  KDFSSGKGGNVVAFLMEHEHFTYPEAIKHLAKKYNIEIEETEQNDEQKEQANERESMYLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +F   L N    +     Y  ERG     I+ F LGY  D+  S      +KG+
Sbjct: 117 SEYAQKYFSDILWNTELGKAIGLSYFKERGFTEETIKKFALGYCLDNWDSFTNAALEKGY 176

Query: 179 SEEKIIEAGLLID-----GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VK 232
             + + + GL I         ++  +DRF+ R++FPI+S  G+V+ FGGR L+  +   K
Sbjct: 177 QIKYLSDTGLTIVKEDAANPANSKKFDRFKARVMFPIQSLSGRVLGFGGRILTNDKKAAK 236

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPE+ ++HK K LY  + A   + K               LVEGY DV+   Q G++
Sbjct: 237 YLNSPESDIYHKSKVLYGIYHAKQAIAK----------EDNCYLVEGYTDVIQFHQRGIE 286

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           NVV+S GTALT  Q+RL+ +L+  I + FDGD  GLRA+ + IDL    L  G  V    
Sbjct: 287 NVVASSGTALTPEQIRLVNRLTKNITVLFDGDAAGLRASLRGIDL---ILEQGMNVKICS 343

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              GEDPDSF R        + +  +               + + P +RA+    + N I
Sbjct: 344 FPEGEDPDSFARANNLEEVLEYLKTNSKDFIQFKASLLIKEAESDPVKRADTVRDIVNSI 403

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--SS 470
           + I D+  +  Y Q     +           +   +    +   + ++    ++     +
Sbjct: 404 SKIPDRIQKEIYIQECAQIMNISESVLFNTLAQIDKKEVSDTHKKVKEEQKAQVFNVVKN 463

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL------------------------- 505
              G+        E  ++  L+ +    QE    +                         
Sbjct: 464 EEVGQKVDVQFELERKIIEILLLYGNSPQEFEDLILKENEKGDLELEPEKIEAKVYEKIF 523

Query: 506 -----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
                 +I   N   + ++S L  +  E + F        L +    E+   L  + +  
Sbjct: 524 LDLQDDEIELGNENFRNIYSKLIQELNENENFSINTFIAPLDQEMVSEISSILMEEEKYM 583

Query: 561 GLWSATTEANIVDVRQGYQQALA---LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
               A  E           Q      L  R  L+ R+   ++ +  ++      E    +
Sbjct: 584 LHDWARKEIYPKKKEVTIAQLTNETILTLRCFLIKRRINALQNETTKLEND-NREILEEI 642

Query: 618 ISIL 621
           ++ +
Sbjct: 643 MNYI 646


>gi|171059242|ref|YP_001791591.1| DNA primase [Leptothrix cholodnii SP-6]
 gi|170776687|gb|ACB34826.1| DNA primase [Leptothrix cholodnii SP-6]
          Length = 598

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 158/608 (25%), Positives = 246/608 (40%), Gaps = 49/608 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI+DLL    I  ++G+ V   +   N     Y   CPFH EK+PSF  + +K FY
Sbjct: 2   IPQGFIQDLLARADIVAVVGRSVQLKKTGAN-----YSGLCPFHAEKSPSFTVSATKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK------IQTD 116
           +CF C   G+ + FL    G +F+++V  LA   G  +P  +   E++EK       Q  
Sbjct: 57  HCFGCGANGNAIGFLMEASGMTFVDAVHELAQEVGATVPEENTSPEQREKAAQARAQQLT 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L   A   +   LK +   +   YL  RG+       F LGYAP   + L      +
Sbjct: 117 LTELQAQAAAHYRKQLKAS--PKAIDYLKRRGLTGEIAARFGLGYAPPGHHGLASAFA-R 173

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
                 +    +++D       +DRFR+R++FPIR+ +G++I FGGR L      KYLNS
Sbjct: 174 YDDPLLVESGLVILDEGQDQRRHDRFRDRIMFPIRNVKGEIIGFGGRVL-DDSKPKYLNS 232

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F KG  LY  + A   ++              +++ EGYMDV++L Q G    V+
Sbjct: 233 PETPVFVKGHELYGLYEARQAIR----------QRGHVLVTEGYMDVVALAQLGFDQAVA 282

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   ++ L + + ++V  FDGD+ G RAA +A++ VL          F+ L   
Sbjct: 283 TLGTACTADHVQKLVRHTDQVVFSFDGDNAGRRAAMRAMEAVLPFATDTRSFRFLFLPAE 342

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPDS++R  G  AFE+ I E+LPL   + +    +    TP+ RA L    +     + 
Sbjct: 343 HDPDSYVRAEGAEAFERRIAEALPLSSQMLQVAGADCDLVTPEGRARLVAQAEPLWRALP 402

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS------- 469
              LR          + QL    +    G G              PS             
Sbjct: 403 AGVLRMQMVNEFAQ-VAQLNAADLAARWGAGPPRAPAQSQEQPYAPSYPSTPGRGKFQRR 461

Query: 470 --------------SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN-E 514
                         +   G         E      L+              D+  +    
Sbjct: 462 DGRPGKDSDLMAQLASRAGGRRPNAHRPEDRAAWLLLQRSEWWAGLSGADHDLLCELPGW 521

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVD 573
             +L+  L    +E +     E+   L +       +  +D  ++         +  I  
Sbjct: 522 HGELFRHLDQMHMESEPLSWPELRDTLVQFEWCSTAIALVDAAIQGIEPLLEDLQPVITQ 581

Query: 574 VRQGYQQA 581
           +R    QA
Sbjct: 582 IRGAVPQA 589


>gi|312863358|ref|ZP_07723596.1| DNA primase [Streptococcus vestibularis F0396]
 gi|311100894|gb|EFQ59099.1| DNA primase [Streptococcus vestibularis F0396]
          Length = 603

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 153/644 (23%), Positives = 266/644 (41%), Gaps = 56/644 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I+D+     I ++IG+ V  +R   N     Y   CPFH EKTPSF+  + + 
Sbjct: 1   MVIDKALIEDIKSSTNIVDVIGEVVSLNRAGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD-LIR 119
           FY+CF C   GD   FL      SF ESV+ LA   G+ + +  P+  +++         
Sbjct: 56  FYHCFGCGKSGDVFKFLEEYRQISFQESVKVLADRLGIAVTIDAPRQSQQQNSPNQAFYD 115

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L E A  F+H  L      +    YL ERG+    ++ F++G APD    L + + +K  
Sbjct: 116 LHEDALKFYHAVLMTTKIGEAARAYLYERGMTDDLLKTFQIGLAPDEPDYLHQSVSKKYD 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234
            E              S   +D F+NR++FP+++  G+ I F GR  +K +      KY 
Sbjct: 176 EEVLTESGLFN--LSESNRLFDTFKNRIMFPLKNEFGKTIGFSGRVWTKEDIEKGQAKYK 233

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+  T +F+K   LY+   A   +QK          +  + L+EG+MDV++  +AG  N 
Sbjct: 234 NTRATRIFNKSYELYHLDQAKPVIQK----------THEVYLMEGFMDVIAAYRAGHVNA 283

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +  L KL+ +IVL +DGD  G  A  K+++L+    +       V + 
Sbjct: 284 VASMGTALTPEHVNRLRKLTKKIVLTYDGDKAGQNAIAKSLELLSDFQVD-----IVKIP 338

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD +++   + A  KL+VES       W  + +  + +           +   I  
Sbjct: 339 DNMDPDEYLQKTSEEALGKLLVESRISDVEFWIGQLKPANVDNLQAEIAYVEQIAKIIAK 398

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---- 470
                 +  Y   + D L       + +     R   +N +       S    +SS    
Sbjct: 399 SPSVTAQNSYISKVADLLPDFDFFQVEQAVNNERLTMRNQQTAQLSAASNSAYESSASGF 458

Query: 471 -----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                L            E  L   ++NHP IL +      +  +   EL++L+ ++   
Sbjct: 459 RGTVKLPSTPKITGLRRAENQLFHRMLNHPMILNDYRMR-EEFFFQTPELEELY-YILKQ 516

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
             +        + Q +    + ++L+++              E ++ +V     QA+   
Sbjct: 517 DGQIDTVALSLLSQEVQTAYY-QVLEEI-----------LPPETSLEEV-----QAIEER 559

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +   L  +   +  KQI + +  G+ +     + +L      + 
Sbjct: 560 RNHFLREQDFRKQSKQIRESSNHGDVDAAVEALQMLIAQKRDME 603


>gi|326335634|ref|ZP_08201821.1| DNA primase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692400|gb|EGD34352.1| DNA primase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 654

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 168/669 (25%), Positives = 289/669 (43%), Gaps = 63/669 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I  +   I +  +IG ++   R  +      Y    PF +E+TPSF  + SK  +
Sbjct: 2   ITKESIDKVYDAIRVEEVIGDFIQLKRAGSG-----YKGLSPFTNERTPSFSVSPSKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G+ ++FL      S++E++  LA    + L       E+K K   +  L  +
Sbjct: 57  KDFSSGKGGNAIAFLMEYEHFSYVEAIHYLAKKYHIELEETQQNEEEKNKANEKEGLYLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A D+FH +L  + + +     Y  ERG     I+ F+LGY+PD+  +  +    KG 
Sbjct: 117 SEFARDYFHRTLLESEEGKALGLTYFKERGFTDEMIQTFQLGYSPDNWTAFTDEALSKGM 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
               + + GL I  +++    DRF+ R++FPI S  G+V+ FGGR LS+ + V KYLNSP
Sbjct: 177 KLSFLEKTGLTIIKEDNRK-IDRFKGRVMFPILSMSGRVLGFGGRILSQEKKVAKYLNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK   LY  F A  ++ K               LVEGY DV+ L Q G++NVV+S
Sbjct: 236 ESDIYHKSNILYGIFQAKPFISK----------EDICYLVEGYTDVIQLYQRGIKNVVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT+ Q+RL+ +L+P I + +DGD  GLRAA + +D++L     G  V       GE
Sbjct: 286 SGTALTQEQIRLIRRLTPNITVLYDGDSAGLRAAIRGVDMILAE---GMNVRICTFPEGE 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF + Y     ++   E                + N P +RA+    +   I+ I D
Sbjct: 343 DPDSFAKEYSLEEIQEYFKEHTQDFIRFKASLLMKETQNDPLKRADTIRDMIESISKISD 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R  Y +     ++   +   T  +   +     A    ++   +   Q +     ++
Sbjct: 403 PIKREIYVRECAQIMEISEEVLFTSLAQINQRQLIKANQELKRAQKETPSQVTENPIAVN 462

Query: 478 KKPSLREAALLLTLINH---------------PAILQE----------QYQEL------A 506
               L E  L+  L+ +               P   +E           Y++L       
Sbjct: 463 PVTYL-EKDLIKYLLLYGQKECNFEEKFLYYDPDTGEEKIQETTQKMKVYEKLFLELQAD 521

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS-A 565
           +I     E ++L++F  + + E        I  ++       L+     Q  D  L   A
Sbjct: 522 EIELSTPEFRELYTFFINQYQEG-LQDISLIINKIPPS-MASLVASFQAQEEDLHLHDWA 579

Query: 566 TTEANIVDVRQGY---QQALALYKRFRLLSRQKEEIEKQIAQVTAK-GEAEKTAILISIL 621
             +  + D  +       ++ L  R RL+ ++ E + ++I  +  + G+   +   +   
Sbjct: 580 RKDVVVKDKDEDLPYAITSIILNLRKRLIDKKIESLREEIITIENEDGDPSWSLQEVIEY 639

Query: 622 HEVHIQIHQ 630
           + +   I +
Sbjct: 640 NTLKNIIGR 648


>gi|229824057|ref|ZP_04450126.1| hypothetical protein GCWU000282_01361 [Catonella morbi ATCC 51271]
 gi|229786411|gb|EEP22525.1| hypothetical protein GCWU000282_01361 [Catonella morbi ATCC 51271]
          Length = 632

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 156/659 (23%), Positives = 280/659 (42%), Gaps = 62/659 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P D I+ +     I  +I QYV   +R  N     Y   CPFH++  PSF  +  K  Y
Sbjct: 4   IPNDIIESVKKEADIVAIINQYVALTKRGNN-----YTCSCPFHEDNNPSFSVSPDKQIY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-EKKEKIQTDLIRLI 121
            CFSC   G+   FL  + G SF E+V+++A ++ + L     +  +   +    L+ L 
Sbjct: 59  KCFSCGRGGNVFGFLQEMEGISFPEAVKKVAELSNIALDSRYFETGQAVSQPHQRLLDLH 118

Query: 122 EVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           E A DF+H  L +    +  + YL +R +    +  F LG APD+   L ++L + GFS+
Sbjct: 119 EKARDFYHFYLTQTVAGESAYAYLKQRELKEETLSDFHLGLAPDNPQLLIQYLSEAGFSQ 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESVKYLN 235
           ++++++G  I  + S    DRF  R+IFP+   +G+ +AF GR          +  KY+N
Sbjct: 179 DEMLQSG--IFYEASQGLMDRFHGRIIFPLEDRQGRTVAFSGRIYQADSGDEQKVAKYVN 236

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +FHK   +Y+F  A  ++++           + +++ EGY+DV++L QAG    V
Sbjct: 237 SPETDIFHKSSLIYHFAQARPHIRRL----------NQVLICEGYLDVIALSQAGFPQAV 286

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +++GT+LT   L  L K++  I+  FDGD  G +A  +A +L L        V  V +  
Sbjct: 287 ATMGTSLTSQHLSQLGKVTQEIIFAFDGDAAGQKATARAFELSLTLPRH--TVKAVAIPG 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD +I+  G  +F+ LI +++P  + L     +       ++RA     L + +  +
Sbjct: 345 KMDPDEWIKSRGADSFKSLINQAIPRYEFLKNYLQQEYQLADLEQRALYINRLLDLVAQL 404

Query: 416 KDQKLRYYYSQAIRDR-----------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
                R    QA+ +            L Q+  +   + +      K+++  +  K  S 
Sbjct: 405 PSPIERTMRLQALAEEFGLDLAMLEEQLAQVSYRQRKDQAKESDSPKQDSADKWAKAHSS 464

Query: 465 RLMQSSLVKGKLSKKPSLR------------EAALLLTLINHPAILQEQYQELADIRYDN 512
                +L    +  KP +             E  +L  LI +    Q        + + +
Sbjct: 465 GFSDQALPSKPVQAKPGVLDGQIKSLKAYHCERYILSNLIFNEPAWQFIEGLEQPLLFVH 524

Query: 513 NELQKLWSFLFS-DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
              Q ++  L    + +        I          + L  L          +  +E  +
Sbjct: 525 PSAQAIYYQLEHFYYEKGGRLPLNGILDVEASPDEQQYLASL----IWDHAQTDYSEQAM 580

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            D  +    A            Q +E++ ++ Q   +G+  K    +  +  +  Q+ +
Sbjct: 581 QDCLKTIDAAFT--------EIQLKELQTKLKQAQIRGDKTKMNEYLVEILRLSRQLKK 631


>gi|320537365|ref|ZP_08037320.1| DNA primase [Treponema phagedenis F0421]
 gi|320145830|gb|EFW37491.1| DNA primase [Treponema phagedenis F0421]
          Length = 593

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 164/638 (25%), Positives = 276/638 (43%), Gaps = 55/638 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     + +L+  Y   +RR       D+W CCPFH+EKTPSFH    K  
Sbjct: 3   KITAQTIDAVNDKTDLVSLVENYTHLERRG-----HDWWGCCPFHNEKTPSFHVVPDKKM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           YYCF C   G  + FL  +    F E+V+RLA  AG+P+       +  E    +  L+ 
Sbjct: 58  YYCFGCGSGGSTIKFLMEMEKIPFAEAVERLAKRAGIPVEYEGGGYQPSEDSVFKDQLLE 117

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L +  T  FHH L    + K    YL  R +    IE FKLG+AP+ RY L + L +KG+
Sbjct: 118 LYDRITKTFHHFLMHTEQGKPALDYLKSRAVSDSVIESFKLGFAPEQRYWLFKFLTKKGY 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S E +  +GL    +  ++ +     R+I+PI +  GQVIAFGGR LS     KYLN+ +
Sbjct: 178 SAEFLARSGLFARKNPESSFFA---GRIIYPITNRHGQVIAFGGRILSGN-GPKYLNTAD 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
              + KG+NL+ F+ AL  ++K          +   I+ EGYMDV++  QA +Q  ++ L
Sbjct: 234 IPQYKKGENLFAFYQALPEIRK----------TKSAIICEGYMDVMAFHQAEIQTAIAPL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE Q+ L+   +  + LCFD D  G  A YKAI L       G  V  + + +G+D
Sbjct: 284 GTALTEEQVHLIHSFADTVYLCFDSDTAGQAATYKAIKLCR---TSGLDVRVLNIQKGKD 340

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +   G    + L+  ++   + L K  +      TP+ +      L   I  ++  
Sbjct: 341 PADILLNEGNDGLKTLLKNAILDSNYLMKIASNTYDLGTPEGKHNAAAFLFPYIEVLESD 400

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R               +    ++           R++    P  +  Q + V  K S 
Sbjct: 401 IQRESTINKAASAFGISQRALYADYQN---------RNQATPSPVTQPKQRASVGIKRS- 450

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E  ++L ++ +P + ++    L    +++   + L+  L   +        + + 
Sbjct: 451 ----AELRVVLAVVANPELFKKLRYSLTADHFEDELAKDLFIVLEECYRADAD-TYDSLF 505

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R        L+ +           +  +     +  +     +   KR  +L ++K+ I
Sbjct: 506 SRCQNEELKNLISE-----------TIISGEFSQNAEKIVDDGIRFIKR-NILFKRKDAI 553

Query: 599 EKQIAQVTAKGEAEKTAI---LISILHEVHIQIHQIES 633
             ++ Q++ K  AE+      L+S    +  ++  ++ 
Sbjct: 554 VGRLRQLSGKPHAEELEQLVALMSEKQRIDDELQALKE 591


>gi|315225147|ref|ZP_07866964.1| DNA primase [Capnocytophaga ochracea F0287]
 gi|314944830|gb|EFS96862.1| DNA primase [Capnocytophaga ochracea F0287]
          Length = 656

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 154/673 (22%), Positives = 282/673 (41%), Gaps = 69/673 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I  +   + +  +IG +V   R  +N     Y    PF +E+TPSF  +  K  +
Sbjct: 2   ISKNTIDKVYDQMRVEEVIGDFVQLKRAGSN-----YKGLSPFSNERTPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA    + +       E+K +   +  L  +
Sbjct: 57  KDFSSGKGGNAIAFLMEHEHFTYPEAIRYLAKKYHIDIEETQQSSEEKAQADERESLYIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +F  +L N    +     Y  ERG     I+ F+LG++PD   +  ++   KG+
Sbjct: 117 SEYAQQYFQDTLFNTEAGKAIGMTYFKERGFTEETIQKFRLGFSPDEWTAFTDNALAKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
             E + + GL I   N    +DRF+ R++FPI S  G+V+ FGGR L+  +   KYLNSP
Sbjct: 177 QLEFLEKTGLTIV--NGDRKFDRFKGRVMFPIHSMSGRVLGFGGRILTNDKKQAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  F A   + K          +    LVEGY DV+ + Q G++NVV+S
Sbjct: 235 ESEIYHKSKVLYGIFFAKQAIAK----------ADNCYLVEGYTDVIQMHQKGIENVVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT+ Q+RL+ +L+P I + +DGD  GLRA+ + +DL    L  G  V       G+
Sbjct: 285 SGTALTQDQIRLIHRLTPNITVLYDGDAAGLRASIRGVDL---ILEQGMNVKVCTFPEGD 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R          +  +               + N P ++AE    +   I+ I D
Sbjct: 342 DPDSFARKTAYEDLVLYLENNATDFIRFKASLLMQEAQNDPIKKAETIRDMVESISKIPD 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R  Y +     +    Q   +  +   +      +  ++K  + +++Q+     K +
Sbjct: 402 LIKREVYVRECATIMDISEQVLFSTLAQILKKDFYEGQKVERKQSTMQVVQTPEETQKRT 461

Query: 478 -KKPSLREAALLLTLIN--------------------------------HPAILQEQYQE 504
             +  + E  L+  L++                                H  +  E  + 
Sbjct: 462 INRLEVLEHDLIKILLSKGNEDCVFTDTILVEEENGDLKEKQVQQTLKVHEKVFLELQE- 520

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--------CERGFGELLKQLDRQ 556
             +I + N + ++++  L + F+E   +        L         +    +  + LD  
Sbjct: 521 -DEIEFANPDFKQIYDQLMTKFLENDSYDVNRFANELPVELSAKVSDLKMEDEFRHLDNW 579

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           ++   + +   + ++  +       + L     L++   E+I  +I     K   E+   
Sbjct: 580 LKR-DIVAKEKDKDLNRIISDIILNIRLLLIMHLINNLAEKIRTKITDEERKSIMEEVIG 638

Query: 617 LISILHEVHIQIH 629
              +   +  +++
Sbjct: 639 YNQLKTILGKRLN 651


>gi|332686633|ref|YP_004456407.1| DNA primase [Melissococcus plutonius ATCC 35311]
 gi|332370642|dbj|BAK21598.1| DNA primase [Melissococcus plutonius ATCC 35311]
          Length = 628

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 150/651 (23%), Positives = 279/651 (42%), Gaps = 55/651 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P++ I+++     I +++ QYV   +   N     Y   CPFH+E++PSF   + K  +
Sbjct: 5   IPQEVIEEIRHQTNIIDIVSQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQIF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTDL 117
           +CF C   G   +F+  + G SF ++V+++  +  + +     P+   +  +  + +  L
Sbjct: 60  HCFGCGKGGTIFNFIQEIEGISFPQAVKKVVEMENLSVSIDLNPIQATETPQMRQKRQ-L 118

Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I + + A + +HH L      +    YL ERG+    I+ F +G+AP  R  L+   +  
Sbjct: 119 IEVHKKAVELYHHVLVNTKAGEEALKYLIERGLTREIIDTFMIGFAPMERDFLQRVFQND 178

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-----V 231
            F    +  +GL +  D    S+DRF  R++FPI   +   IAF GR L   +       
Sbjct: 179 QFDVSILDASGLFVKRDTG-ESFDRFYQRIVFPIYDVQNNPIAFSGRLLKTKQFIGENLP 237

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET+LF+K + L+NF  A  Y++K           + + L EG+MDV++  Q+G+
Sbjct: 238 KYLNSPETLLFNKRETLFNFNQARKYIRK----------ENTVFLFEGFMDVIAAWQSGI 287

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
            N ++S+GT+LT  Q+R L K+S ++VLC+DGD  G+ A  +AI L+         ++ +
Sbjct: 288 YNGIASMGTSLTNQQIRYLEKVSEKLVLCYDGDQAGIEATNRAIQLLNQQSR--LMLSVL 345

Query: 352 LLSRGEDPDSFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            L    DPD ++R YG  +F+ L   E   +         ++R+     E+ +    L  
Sbjct: 346 NLPEKLDPDDYVRKYGVDSFKTLATHEQQTVFSFKMFYHRQSRNMKNEKEQIDYVQTLLG 405

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  +     R +Y Q +  +          +     +  +   R   ++   +      
Sbjct: 406 ELLLVLSPLERDHYMQQLAKQFNLSLHSLEEQFHQLKQKQRVEQRATKKQLAIKEPTVKR 465

Query: 471 -----------LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                              +    E  L+  L+N P ++++Q     +  + ++  Q+L+
Sbjct: 466 KQTYSLFQSMQQQNKLPLSQEEKAEQTLIYRLMNEP-LVRDQINNENNFSFIHDNYQELY 524

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L    +E   F   +    L      +L+ ++D+Q+                  +   
Sbjct: 525 LLLNVYLMEHNSFHLADFVNYLQNDEIKKLVIEIDQQIIS------------EKSSEREI 572

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             L    R   L  +  E ++Q       G+      L   +  +  Q+ +
Sbjct: 573 NDLLYVIRSAKLKEKITEKKQQQKNAEKLGDKLLAEELTIEIIHLVQQLDK 623


>gi|146321289|ref|YP_001201000.1| DNA primase [Streptococcus suis 98HAH33]
 gi|145692095|gb|ABP92600.1| DNA primase (type) [Streptococcus suis 98HAH33]
          Length = 596

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 143/636 (22%), Positives = 258/636 (40%), Gaps = 50/636 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I ++   + I ++IG+ V   +   N     Y   CPFH EKTPSF+  + K FY
Sbjct: 2   LSKDKITEIKQALNIVDVIGETVALTKAGRN-----YVGLCPFHGEKTPSFNVIEDKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
           +CF C   GD   F+  + G SF ++   LA  AG  + V     + EK+      L  +
Sbjct: 57  HCFGCGKSGDVFKFVEEVRGVSFADAAAILAEKAGFQIDVTPSYHQEEKRVSPHQVLYDI 116

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+H  L      +    YL +RG+    I+ F+LG AP  +  L + L  +   
Sbjct: 117 HRDAAKFYHALLMTTKMGEEARAYLHQRGLTDDVIKTFQLGLAPAEQNILYQKLSGQYDE 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-----KYL 234
           E  +           +   YD F+ R+IFP+    G+++AF GR  ++         KY 
Sbjct: 177 ESLLNSGLFN--PSENNIIYDAFQARIIFPLADEYGRIVAFSGRIWTEENRNNKQLAKYK 234

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS  T +F+K   LY+   A   ++K               L+EG++DV++  + G+ N 
Sbjct: 235 NSRSTAIFNKSYELYHLDKAKAVIKKQ----------RETYLMEGFLDVIAAHRVGIDNA 284

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +  L K   +IVL +DGD  G  A  KA+D +    +       V L 
Sbjct: 285 VASMGTALTREHVAHLAKFCKKIVLTYDGDKAGQAATMKALDELQDFQVE-----IVSLP 339

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD F++   + A ++++ +S         +  +  + +    + E    +   I  
Sbjct: 340 DNMDPDEFLQKNSEEALQQVLTKSRISDVEFLIQYLKPENPDYLQMQIEFVDKIAPIIAK 399

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVK 473
           +     +      + D L       + +     R  ++  R +   +  + +     +  
Sbjct: 400 VSSITAQNSDIYKVADLLSDFDYNQVEQAVNAVRLNQRQERTQQVFQSQTGQSYLPPVQT 459

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                     E  LL  ++ HP IL E ++   D  +   ELQ ++  +     E   F 
Sbjct: 460 IARITSLIRTENHLLYRMVEHPYILNE-FRLREDFYFATPELQAIYD-MLKKSGEITSFE 517

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             +++    +  +    ++L                   +V     + L + +   LL +
Sbjct: 518 LSQLNDSAQQAWYRMQEERL-----------------PDEVSPHEIEELEIRRDKELLKK 560

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + + + ++I + +  G A+     +  L +   Q+ 
Sbjct: 561 ENQHLARKIREHSHVGNADIALDELQKLLDRRRQME 596


>gi|212219306|ref|YP_002306093.1| DNA primase [Coxiella burnetii CbuK_Q154]
 gi|212013568|gb|ACJ20948.1| DNA primase [Coxiella burnetii CbuK_Q154]
          Length = 572

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 168/612 (27%), Positives = 264/612 (43%), Gaps = 62/612 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI+DLL    I  LI   V   +R  N     Y   CPFH EKTPSF  + SK F
Sbjct: 23  RIPQSFIQDLLSRTDIVELIQSRVAIKKRGAN-----YLGLCPFHTEKTPSFTVSSSKQF 77

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C   G+ +SFL A     F+E+V  LA   G+ +P       K  +I  D   L+
Sbjct: 78  YYCFGCAAHGNAISFLMAFDRMEFLEAVTDLANQLGIEIPHETIGQSKTAEINDD-FILL 136

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
              + F+   LK +      +YL  RG+     + F +GYAP++  +LR   +      +
Sbjct: 137 TTISRFYQRELKRS--PTAIHYLKSRGLTGETAKQFAIGYAPNAWENLRPFAKNSKTQSQ 194

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +    L+         +DRFR+R++FPIR  RG+VIAFGGR+    +  KY+NSPET L
Sbjct: 195 LVTHGLLVKK---ENRCFDRFRHRIMFPIRDVRGRVIAFGGRS-VGEDLPKYMNSPETPL 250

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KG  LY    A    +   R           ++VEGYMDV+SL Q G+   V++LGTA
Sbjct: 251 FQKGNELYGLHEACKTHRPLPRA----------LIVEGYMDVVSLHQHGITYAVATLGTA 300

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            +   L+ L + +  I+ CFDGDD G +AA++A+   L  +  G  + F+ L +GEDPDS
Sbjct: 301 TSVRHLQKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDS 360

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            I+  G+ AFE  I ++ PL ++ +    +     + D++A         +  +      
Sbjct: 361 LIQKIGREAFENKIDQAPPLSEVFFSHLQKEIPIRSIDDKAAFAKQALEHLRPMPRGIFY 420

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + +  RL     +                           L  +       S +  
Sbjct: 421 QLLLEELAQRLTLDLSEL------------------------DSLTVAPPPMPAASTRVP 456

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                 L  L   P+++    Q++   + ++ ++Q L   +     ++      E+    
Sbjct: 457 SLAYHALSILAQAPSLVS-VIQDMTIPKSEDPQIQFLAKMVL-FLKKRPVANTGELLAF- 513

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
           C      LL QL             T  +  D+    + A+           QKEE  + 
Sbjct: 514 CPESQRRLLAQLAAY---------KTGLSEDDLAAELKDAINRLHEQH----QKEEAFQA 560

Query: 602 IAQVTAKGEAEK 613
           + + + K   ++
Sbjct: 561 LIKASHKETLDE 572


>gi|186683726|ref|YP_001866922.1| DNA primase [Nostoc punctiforme PCC 73102]
 gi|186466178|gb|ACC81979.1| DNA primase [Nostoc punctiforme PCC 73102]
          Length = 682

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 160/692 (23%), Positives = 279/692 (40%), Gaps = 77/692 (11%)

Query: 1   MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           M  P    D I+++ +   I +++ +YV   +R       D+   CPFHDEK+PSF  + 
Sbjct: 1   MQIPRLHPDTIEEVKLRADIVDVVSEYVVLRKRGK-----DFVGLCPFHDEKSPSFTVSQ 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---- 113
           +K  YYCF C   G+ + F+  L   SF + V  LA    VP+  ++P+  ++ +     
Sbjct: 56  TKQMYYCFGCQAGGNAIKFVMELGKRSFADVVLDLARRYQVPVQTLEPEQRQELQRQLSL 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH 172
           +  L  ++  +  F+ H+L+ ++ ++   Y    R +    I+ F LGYAP    +L  +
Sbjct: 116 REQLYEVLATSAQFYQHALRQSQGQKALQYLQSNRQLKEETIQQFGLGYAPAGWETLYRY 175

Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
            +  K +  + + +AGL+         YD FR+RL+ PIR  +G+VIAFGGRTL   E  
Sbjct: 176 LVEDKHYPAQILEKAGLIKPRKEGGGYYDVFRDRLMIPIRDVQGRVIAFGGRTL-TDEQP 234

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF KGK L+    A   +          +     ++VEGY D ++L  AG+
Sbjct: 235 KYLNSPETELFSKGKTLFALDQAKGGI----------SQLDQAVVVEGYFDAIALHAAGI 284

Query: 292 QNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348
            N V+SLGTAL+  Q+RL+ + +   ++VL FD D  G  A  +AI ++         ++
Sbjct: 285 NNAVASLGTALSLEQVRLVLRYTESKQLVLNFDADKAGTNATERAIGEIAELAYKGEVQL 344

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFE----------------------------KLIVESLP 380
             + L  G+D D F+  +    ++                            +L+  +  
Sbjct: 345 KILNLPNGKDADEFLNTHNPEEYQALAAPIKRLSTLEKFRFRIDELSPSERKELLETAPL 404

Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
            +D   K+  ++R      +  ++   L   +  I +   R YY     + L     + I
Sbjct: 405 WLDWQIKQIIQDRDLKQATDFQQVTQQLVKLLKKIANSDTRNYYVSYCAEILSLGDTRLI 464

Query: 441 TEHSGYGRYWKKNA-----RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
                        A     +    K        S              EA LL   ++ P
Sbjct: 465 PLRVENLLTQIAPAAAAYTKPVSAKQAWGSSKVSQSPLPTERSLLEHAEALLLRIYLHCP 524

Query: 496 AILQEQYQELAD--IRYDNNELQKLWSFLFSDFVEQKY-----------FLPEEIHQRLC 542
              Q    EL +  +++  +  + LW  +                        ++  RL 
Sbjct: 525 EQRQAIIAELEERDLQFSLSHHRFLWQQILEISSSDGETRNWASPRFANASQPDLISRLQ 584

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +             +      +   +  I+   Q  Q A+A      +L ++     +  
Sbjct: 585 DHFLE--FSSEMGLISHLFHVNEKNQKEILRTPQVVQAAIAC-MDLVMLEKRYRHFLELW 641

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            Q   + E E+        +   I++ +I+ Q
Sbjct: 642 QQTDPEAEPERYQSYYQAFYAEKIKLQKIDRQ 673


>gi|325831471|ref|ZP_08164725.1| DNA primase [Eggerthella sp. HGA1]
 gi|325486725|gb|EGC89173.1| DNA primase [Eggerthella sp. HGA1]
          Length = 626

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 153/644 (23%), Positives = 256/644 (39%), Gaps = 44/644 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I+ +     +  +IG+     +R       D+W CCP H+EKTPSF  + +   +
Sbjct: 5   ISEEDIQKVREANDLVEVIGERTPVKQRGR-----DFWCCCPLHNEKTPSFKIDPALQLW 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD   F+      SF E+V+RLA  A + +     +       +  L  + +
Sbjct: 60  HCFGCGEGGDVFGFIMKTEDLSFPEAVRRLAERAHIDIAESGGRKSIGSSRKARLKAVCD 119

Query: 123 VATDFFHHSLKNARD---KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             + F+H  L             YL  RG+     + ++LG+AP     L  HL  KGF 
Sbjct: 120 ETSQFYHCQLMRNPGSDASAARSYLGARGLGGEVPKTWQLGFAP-GHGQLVRHLSAKGFK 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            +++++A +    ++     DRF NR++FPI   +G+ IAFGGR + KGE  KYLNS ET
Sbjct: 179 PDEMVQANVA-LSNDGGKLRDRFYNRIMFPINDPQGECIAFGGRVVGKGEP-KYLNSQET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LFHK + LY    A   +           S+   ++VEGY DV++L +AGV+N V++LG
Sbjct: 237 PLFHKSQVLYGMDKAKAAMA----------STGIAVVVEGYTDVIALHEAGVRNAVATLG 286

Query: 300 TALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAI-----DLVLCHLIPGNRVNFVLL 353
           TALT   +RLL + +   IV  FDGD+ G RAA +A+      +          +  V L
Sbjct: 287 TALTMRHIRLLSRHAQHAIVYLFDGDEAGQRAADRALAFIDDSMTPEAGKSRIELAAVTL 346

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DP  F+   G    +KLI  + PL+    +R          + RA         + 
Sbjct: 347 PDNLDPADFVAQRGAEELQKLIANAQPLLKYGIERRLARHDLGRAEGRAAALADALQVLA 406

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            IKD  L   Y+  I   ++   Q  I +         +  R  +          +    
Sbjct: 407 PIKDSMLARDYAVQIATSVRAREQDVIDQLEHLKAPKVEGERDDEGAPDGFEQAAAPQRP 466

Query: 474 GKLSKKPSLR----EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            +   +  +     E  LL      P +       LA  ++       +   +     E 
Sbjct: 467 ARSLPRAEVNRRRFERQLLTLAARRPDLALLHADALAQTQWHEQAHAVVAQSMLDALAED 526

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                  +          E  + L          + +  A    +     + LA+     
Sbjct: 527 PAASSARLVT--------EASRALPAAAAVLTSGTVSETAAPEQLAAFLVEELAIGDAED 578

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +      +  QIA   ++ + ++  +L   +  +   + +  +
Sbjct: 579 AVG----ALRAQIAD-PSRLDPDELEMLYETVAAMQQDLKRRRA 617


>gi|212212054|ref|YP_002302990.1| DNA primase [Coxiella burnetii CbuG_Q212]
 gi|212010464|gb|ACJ17845.1| DNA primase [Coxiella burnetii CbuG_Q212]
          Length = 572

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 169/612 (27%), Positives = 264/612 (43%), Gaps = 62/612 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI+DLL    I  LI   V   +R  N     Y   CPFH EKTPSF  + SK F
Sbjct: 23  RIPQSFIQDLLSRTDIVELIQSRVAIKKRGAN-----YLGLCPFHTEKTPSFTVSSSKQF 77

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C   G+ +SFL A     F+E+V  LA   G+ +P       K  +I  D   L+
Sbjct: 78  YYCFGCAAHGNAISFLMAFDRMEFLEAVTDLANQLGIEIPHETIGQSKTAEINDD-FVLL 136

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
              + F+   LK +      +YL  RG+     + F +GYAP++  +LR   +      +
Sbjct: 137 TTISRFYQRELKRS--PTAIHYLKSRGLTGETAKQFAIGYAPNAWENLRPFAKNSKTQSQ 194

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +    L+         +DRFR+R++FPIR  RG+VIAFGGR+    +  KY+NSPET L
Sbjct: 195 LVTHGLLVKK---ENRCFDRFRHRIMFPIRDVRGRVIAFGGRS-VGEDLPKYMNSPETPL 250

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KG  LY    A    +   R           ++VEGYMDV+SL Q G+   V++LGTA
Sbjct: 251 FQKGNELYGLHEACKTHRPLPRA----------LIVEGYMDVVSLHQHGITYAVATLGTA 300

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            +   L+ L + +  I+ CFDGDD G +AA++A+   L  +  G  + F+ L +GEDPDS
Sbjct: 301 TSVRHLQKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDS 360

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            I+  G+ AFE  I ++ PL ++ +    +     + D++A         +  +      
Sbjct: 361 LIQKIGREAFENKIDQAPPLSEVFFSHLQKEIPIRSIDDKAAFAKQALEHLRPMPRGIFY 420

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + +  RL     +                           L  +       S +  
Sbjct: 421 QLLLEELAQRLTLDLSEL------------------------DSLTVAPPPMPAASTRVP 456

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                 L  L   P+++    Q++   + ++ ++Q L   +     ++      E+    
Sbjct: 457 SLAYHALSILAQAPSLVS-VIQDMTIPKSEDPQIQFLAKMVL-FLKKRPVANTGELLAF- 513

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
           C      LL QL             T  +  D+    + A+           QKEE  + 
Sbjct: 514 CPESQRRLLAQLAAY---------KTGLSEDDLAAELKDAINRLHEQH----QKEEAFQA 560

Query: 602 IAQVTAKGEAEK 613
           + + + K   E+
Sbjct: 561 LIKASHKETLEE 572


>gi|215919213|ref|NP_820578.2| DNA primase [Coxiella burnetii RSA 493]
 gi|206584097|gb|AAO91092.2| DNA primase [Coxiella burnetii RSA 493]
          Length = 572

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 168/612 (27%), Positives = 264/612 (43%), Gaps = 62/612 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI+DLL    I  LI   V   +R  N     Y   CPFH EKTPSF  + SK F
Sbjct: 23  RIPQSFIQDLLSRTDIVELIQSRVAIKKRGAN-----YLGLCPFHTEKTPSFTVSSSKQF 77

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C   G+ +SFL A     F+E+V  LA   G+ +P       K  +I  D   L+
Sbjct: 78  YYCFGCAAHGNAISFLMAFDRMEFLEAVTDLANQLGIEIPHETIGQSKTAEINDD-FVLL 136

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
              + F+   LK +      +YL  RG+     + F +GYAP++  +LR   +      +
Sbjct: 137 TTISRFYQRELKRS--PTAIHYLKSRGLTGETAKQFAIGYAPNAWENLRPFAKNSKTQSQ 194

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +    L+         +DRFR+R++FPIR  RG+VIAFGGR+    +  KY+NSPET L
Sbjct: 195 LVTHGLLVKK---ENRCFDRFRHRIMFPIRDVRGRVIAFGGRS-VGEDLPKYMNSPETPL 250

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KG  LY    A    +   R           ++VEGYMDV+SL Q G+   V++LGTA
Sbjct: 251 FQKGNELYGLHEACKTHRPLPRA----------LIVEGYMDVVSLHQHGITYAVATLGTA 300

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            +   L+ L + +  I+ CFDGDD G +AA++A+   L  +  G  + F+ L +GEDPDS
Sbjct: 301 TSVRHLQKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDS 360

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            I+  G+ AFE  I ++ PL ++ +    +     + D++A         +  +      
Sbjct: 361 LIQKIGREAFENKIDQAPPLSEVFFSHLQKEIPIRSIDDKAAFAKQALEHLRPMPRGIFY 420

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + +  RL     +                           L  +       S +  
Sbjct: 421 QLLLEELAQRLTLDLSEL------------------------DSLTVAPPPMPAASTRVP 456

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                 L  L   P+++    Q++   + ++ ++Q L   +     ++      E+    
Sbjct: 457 SLAYHALSILAQAPSLVS-VIQDMTIPKSEDPQIQFLAKMVL-FLKKRPVANTGELLAF- 513

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
           C      LL QL             T  +  D+    + A+           QKEE  + 
Sbjct: 514 CPESQRRLLAQLAAY---------KTGLSEDDLAAELKDAINRLHEQH----QKEEAFQA 560

Query: 602 IAQVTAKGEAEK 613
           + + + K   ++
Sbjct: 561 LIKASHKETLDE 572


>gi|256819747|ref|YP_003141026.1| DNA primase [Capnocytophaga ochracea DSM 7271]
 gi|256581330|gb|ACU92465.1| DNA primase [Capnocytophaga ochracea DSM 7271]
          Length = 656

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 154/671 (22%), Positives = 282/671 (42%), Gaps = 65/671 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I  +   + +  +IG +V   R  +N     Y    PF +E+TPSF  +  K  +
Sbjct: 2   ISKNTIDKVYDQMRVEEVIGDFVQLKRAGSN-----YKGLSPFSNERTPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA    + +       E+K +   +  L  +
Sbjct: 57  KDFSSGKGGNAIAFLMEHEHFTYPEAIRYLAKKYHIDIEETQQSSEEKAQADERESLYIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +F  SL N    +     Y  ERG     I+ F+LG++PD   +  +    KG+
Sbjct: 117 SEYAQQYFQDSLFNTEAGKAIGMTYFKERGFTEETIQKFRLGFSPDEWTAFTDTALAKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
             E + + GL I   N    +DRF+ R++FPI S  G+V+ FGGR L+  +   KYLNSP
Sbjct: 177 QLEFLEKTGLTIV--NGDRKFDRFKGRVMFPIHSMSGRVLGFGGRILTNDKKQAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  F A   + K          +    LVEGY DV+ + Q G++NVV+S
Sbjct: 235 ESEIYHKSKVLYGIFFAKQAIAK----------ADNCYLVEGYTDVIQMHQKGIENVVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT+ Q+RL+ +L+P I + +DGD  GLRA+ + +DL    L  G  V       G+
Sbjct: 285 SGTALTQDQIRLIHRLTPNITVLYDGDAAGLRASIRGVDL---ILEQGMNVKVCTFPEGD 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R          +  +               + N P ++AE    +   I+ I D
Sbjct: 342 DPDSFARKTAYEDLVLYLENNATDFIRFKASLLMQEAQNDPIKKAETIRDMVESISKIPD 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R  Y +     +    Q   +  +   +      +  ++K  + +++Q+     K +
Sbjct: 402 LIKREVYVRECATIMDISEQVLFSTLAQILKKDFYEGQKVERKQSTMQVVQTPEEAQKRT 461

Query: 478 -KKPSLREAALLLTLI----------------------------NHPAILQEQYQEL--A 506
             +  + E  L+  L+                                + ++ + EL   
Sbjct: 462 VNRLEVLEHDLIKILLSKGNEDCVFTDTILVEEENGDLKEKQVQQTLKVYEKVFLELQED 521

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--------CERGFGELLKQLDRQVR 558
           +I + N + ++++  L + F+E   +        L         +    +  + LD  ++
Sbjct: 522 EIEFANPDFKQIYDQLMTKFLENDSYDVNRFANELPVELSAKVSDLKMEDEFRHLDNWLK 581

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
              + +   + ++  +       + L     L++   E++  +I     K   E+     
Sbjct: 582 R-DIVAKEKDRDLNRIISDIILNIRLLLIMHLINNLAEKVRTEITDEERKSIMEEVIGYN 640

Query: 619 SILHEVHIQIH 629
            +   +  +++
Sbjct: 641 QLKTILGKRLN 651


>gi|299136116|ref|ZP_07029300.1| DNA primase [Acidobacterium sp. MP5ACTX8]
 gi|298602240|gb|EFI58394.1| DNA primase [Acidobacterium sp. MP5ACTX8]
          Length = 597

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 164/641 (25%), Positives = 262/641 (40%), Gaps = 58/641 (9%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            +F + +     I  ++G+Y+   +   N     + A CPFH EK+ SF+   +   YYC
Sbjct: 3   DNFAQTVKQQTDIVRIVGEYIKLRKSGAN-----WSALCPFHKEKSGSFYLYPATTSYYC 57

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIRLI 121
           F CH  GD  +F+  +   SF E+V+ +A   G+PLP      P+  +   ++  LI   
Sbjct: 58  FGCHEHGDVFTFVMKMENLSFPEAVRSVATKMGIPLPQREFNSPQEAQAAGLRKQLIDAH 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E AT +F  +L +    R   Y+  RGI    I  F+LGYAPD+   +RE L +    E 
Sbjct: 118 EAATQYFQQNLHSPEAARAREYMTGRGITPETITKFRLGYAPDNFNDMRERLSKFFSEEV 177

Query: 182 K---IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKY 233
                + +    +  +    Y RFR R+ FPI + +G+ IAF  R L           KY
Sbjct: 178 LRASGLFSWKEQEDGSPGPMYARFRKRITFPIMNEQGKPIAFTARALDSVDVDPKAGAKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           +NSPET L+ KG+ L+N   A   ++          S    +LVEG MD +SL   GV N
Sbjct: 238 MNSPETPLYTKGQVLFNLDKAKAAIK----------SKDAALLVEGQMDCISLFMNGVDN 287

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           V+++ GTA TE+QLR+L + + R+ L FD D  G  AA K + L    +     V  + L
Sbjct: 288 VIATSGTAFTEHQLRMLGRFTKRVWLNFDPDQAGANAAEKTLGL---LVEEDFDVRVITL 344

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DPD F+R  G   +   +  +    D L +R        T + + +    L   I 
Sbjct: 345 DGGLDPDRFVRERGVAEYATAVRNASRYQDFLIERARLQFPARTAEAKVKAMNFLLPHIR 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            I +   R  +++    +L         E     +   ++ R    KG S+         
Sbjct: 405 RIPNLISRNDFAENAAQKLGIESSLMRQELKQAAQQRLESVRAPQPKGVSE--------- 455

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL-WSFLFSDFVEQKYF 532
                     E  LL  LI  P     +      +  +     +L  + L          
Sbjct: 456 ---------IERILLCALIL-PDADSSRMLAAEQLAANPEWCTELSAATLIDVLANGPSP 505

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                 +   +     LL  +             +EA+   + +  Q AL    + R L 
Sbjct: 506 DNP--LEAAPDAASRLLLASVLHHSS------GESEASRETLHEQVQNALHTLHQRR-LD 556

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           R+  E+   IA+ T  G  E    L     ++  ++ +++ 
Sbjct: 557 RRLREVRTLIAEATRHGNQEVVMQLAHEKVQLDAELKRMDG 597


>gi|320459026|dbj|BAJ69647.1| DNA primase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 696

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 141/707 (19%), Positives = 254/707 (35%), Gaps = 94/707 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKT SF+   S G +
Sbjct: 2   IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118
           +CF C + GD   ++       F E+V+ LA    + L   +    P  E     +T L+
Sbjct: 58  HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPSRENTGSKRTRLL 117

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E A  FF   +           L  R       E F  GYAP    +L  HL  KGF
Sbjct: 118 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           ++++I++AGL   G      YD FR R+ +PIR S G+ + FG R L + + +  KY+N+
Sbjct: 178 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T L+ K + LY    A + + K             +++VEGY DV+++  AG+   ++
Sbjct: 236 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 285

Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334
           + GTA      +++ +L                        RIV  FDGD  G +AA  A
Sbjct: 286 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGHKAALHA 345

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
             L    L   ++    +     DP       G  A   LI  + PL D +         
Sbjct: 346 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 402

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448
                 +      +   +  I+D+ L   Y++    R+    +    E     R      
Sbjct: 403 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVDLEVMRREVMNARRQMHVRD 462

Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490
                  ++  R   +  P      +   +              K+     + E   +  
Sbjct: 463 EDAYAPKRRFERDEPRVEPGTNPYTNPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 522

Query: 491 LINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           LI  P  +    + +L    +  +  + L+  + +         P+ +      +  G +
Sbjct: 523 LIQVPRAIDRIMFGQLTIEHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 582

Query: 550 LKQLDRQVRDAGLWSA---------TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L Q+  ++    L              ++N      G   A+ L        R   E+  
Sbjct: 583 LNQVINELAVMPLPLPGDDGGNGAQPPQSNAPGGAGGGAAAVQLRPATPEEQRYATELLT 642

Query: 601 QI-------------AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           ++              ++    + E+   L+  +  +      +++Q
Sbjct: 643 RLLDMGFMRQIGLAKRRMAQLPDGEEKITLLGQITRMETARKDLQAQ 689


>gi|213692854|ref|YP_002323440.1| DNA primase [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524315|gb|ACJ53062.1| DNA primase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 699

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 141/707 (19%), Positives = 254/707 (35%), Gaps = 94/707 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKT SF+   S G +
Sbjct: 5   IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118
           +CF C + GD   ++       F E+V+ LA    + L   +    P  E     +T L+
Sbjct: 61  HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPSRENTGSKRTRLL 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E A  FF   +           L  R       E F  GYAP    +L  HL  KGF
Sbjct: 121 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           ++++I++AGL   G      YD FR R+ +PIR S G+ + FG R L + + +  KY+N+
Sbjct: 181 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 238

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T L+ K + LY    A + + K             +++VEGY DV+++  AG+   ++
Sbjct: 239 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 288

Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334
           + GTA      +++ +L                        RIV  FDGD  G +AA  A
Sbjct: 289 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGHKAALHA 348

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
             L    L   ++    +     DP       G  A   LI  + PL D +         
Sbjct: 349 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 405

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448
                 +      +   +  I+D+ L   Y++    R+    +    E     R      
Sbjct: 406 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVDLEVMRREVMNARRQMHVRD 465

Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490
                  ++  R   +  P      +   +              K+     + E   +  
Sbjct: 466 EDAYAPKRRFERDEPRVEPGTNPYTNPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 525

Query: 491 LINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           LI  P  +    + +L    +  +  + L+  + +         P+ +      +  G +
Sbjct: 526 LIQVPRAIDRIMFGQLTIEHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 585

Query: 550 LKQLDRQVRDAGLWSA---------TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L Q+  ++    L              ++N      G   A+ L        R   E+  
Sbjct: 586 LNQVINELAVMPLPLPGDDGGNGAQPPQSNAPGGAGGGAAAVQLRPATPEEQRYATELLT 645

Query: 601 QI-------------AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           ++              ++    + E+   L+  +  +      +++Q
Sbjct: 646 RLLDMGFMRQIGLAKRRMAQLPDGEEKITLLGQITRMETARKDLQAQ 692


>gi|209363782|ref|YP_001423815.2| DNA primase [Coxiella burnetii Dugway 5J108-111]
 gi|207081715|gb|ABS78269.2| DNA primase [Coxiella burnetii Dugway 5J108-111]
          Length = 572

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 168/612 (27%), Positives = 264/612 (43%), Gaps = 62/612 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI+DLL    I  LI   V   +R  N     Y   CPFH EKTPSF  + SK F
Sbjct: 23  RIPQSFIQDLLSRTDIVELIQSRVAIKKRGAN-----YLGLCPFHTEKTPSFTVSSSKQF 77

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C   G+ +SFL A     F+E+V  LA   G+ +P       K  +I  D   L+
Sbjct: 78  YYCFGCAAHGNAISFLMAFDRMEFLEAVTDLANQLGIEIPHETIGQSKTAEINDD-FVLL 136

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
              + F+   LK +      +YL  RG+     + F +GYAP++  +LR   +      +
Sbjct: 137 TTISRFYQRELKRS--PTAIHYLKSRGLTGETAKRFAIGYAPNAWENLRPFAKNSKTQSQ 194

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +    L+         +DRFR+R++FPIR  RG+VIAFGGR+    +  KY+NSPET L
Sbjct: 195 LVTHGLLVKK---ENRCFDRFRHRIMFPIRDVRGRVIAFGGRS-VGEDLPKYMNSPETPL 250

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KG  LY    A    +   R           ++VEGYMDV+SL Q G+   V++LGTA
Sbjct: 251 FQKGNELYGLHEACKTHRPLPRA----------LIVEGYMDVVSLHQHGITYAVATLGTA 300

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            +   L+ L + +  I+ CFDGDD G +AA++A+   L  +  G  + F+ L +GEDPDS
Sbjct: 301 TSVRHLQKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDS 360

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            I+  G+ AFE  I ++ PL ++ +    +     + D++A         +  +      
Sbjct: 361 LIQKIGREAFENKIDQAPPLSEVFFSHLQKEIPIRSIDDKAAFAKQALEHLRPMPRGIFY 420

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + +  RL     +                           L  +       S +  
Sbjct: 421 QLLLEELAQRLTLDLSEL------------------------DSLTVAPPPMPAASTRVP 456

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                 L  L   P+++    Q++   + ++ ++Q L   +     ++      E+    
Sbjct: 457 SLAYHALSILAQAPSLVS-VIQDMTIPKSEDPQIQFLAKMVL-FLKKRPVANTGELLAF- 513

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
           C      LL QL             T  +  D+    + A+           QKEE  + 
Sbjct: 514 CPESQRRLLAQLAAY---------KTGLSEDDLAAELKDAINRLHEQH----QKEEAFQA 560

Query: 602 IAQVTAKGEAEK 613
           + + + K   ++
Sbjct: 561 LIKASHKETLDE 572


>gi|189439767|ref|YP_001954848.1| DNA primase [Bifidobacterium longum DJO10A]
 gi|189428202|gb|ACD98350.1| DNA primase [Bifidobacterium longum DJO10A]
          Length = 699

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 140/710 (19%), Positives = 251/710 (35%), Gaps = 100/710 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKT SF+   S G +
Sbjct: 5   IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDLI 118
           +CF C + GD   ++       F E+V+ LA    + L   +       +     +T L+
Sbjct: 61  HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPARENTGSKRTRLL 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E A  FF   +           L  R       E F  GYAP    +L  HL  KGF
Sbjct: 121 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           ++++I++AGL   G      YD FR R+ +PIR S G+ + FG R L + + +  KY+N+
Sbjct: 181 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 238

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T L+ K + LY    A + + K             +++VEGY DV+++  AG+   ++
Sbjct: 239 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 288

Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334
           + GTA      +++ +L                        RIV  FDGD  G +AA  A
Sbjct: 289 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 348

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
             L    L   ++    +     DP       G  A   LI  + PL D +         
Sbjct: 349 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 405

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448
                 +      +   +  I+D+ L   Y +    R+    +    E     R      
Sbjct: 406 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYVRKSAGRIGVDLEVMRREVMNARRQMHVRD 465

Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490
                  ++  R   +  P      +   +              K+     + E   +  
Sbjct: 466 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 525

Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           LI  P  +    + +L    +  +  + L+  + +         P+ +      +  G +
Sbjct: 526 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 585

Query: 550 LKQLDRQVRDAGLWSATTE-------------------------ANIVDVRQGYQQALAL 584
           L Q+  ++    L     +                                Q Y   L  
Sbjct: 586 LNQVINELAVMPLPLPGDDGGNGAQPPQSNVPGGVGGGAAAVQLRPATPEEQRYATELLT 645

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                   RQ    ++++AQ+    + E+   L+  +  +      +++Q
Sbjct: 646 RLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 692


>gi|46190835|ref|ZP_00120986.2| COG0358: DNA primase (bacterial type) [Bifidobacterium longum
           DJO10A]
          Length = 696

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 140/710 (19%), Positives = 251/710 (35%), Gaps = 100/710 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKT SF+   S G +
Sbjct: 2   IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDLI 118
           +CF C + GD   ++       F E+V+ LA    + L   +       +     +T L+
Sbjct: 58  HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPARENTGSKRTRLL 117

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E A  FF   +           L  R       E F  GYAP    +L  HL  KGF
Sbjct: 118 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           ++++I++AGL   G      YD FR R+ +PIR S G+ + FG R L + + +  KY+N+
Sbjct: 178 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T L+ K + LY    A + + K             +++VEGY DV+++  AG+   ++
Sbjct: 236 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 285

Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334
           + GTA      +++ +L                        RIV  FDGD  G +AA  A
Sbjct: 286 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 345

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
             L    L   ++    +     DP       G  A   LI  + PL D +         
Sbjct: 346 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 402

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448
                 +      +   +  I+D+ L   Y +    R+    +    E     R      
Sbjct: 403 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYVRKSAGRIGVDLEVMRREVMNARRQMHVRD 462

Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490
                  ++  R   +  P      +   +              K+     + E   +  
Sbjct: 463 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 522

Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           LI  P  +    + +L    +  +  + L+  + +         P+ +      +  G +
Sbjct: 523 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 582

Query: 550 LKQLDRQVRDAGLWSATTE-------------------------ANIVDVRQGYQQALAL 584
           L Q+  ++    L     +                                Q Y   L  
Sbjct: 583 LNQVINELAVMPLPLPGDDGGNGAQPPQSNVPGGVGGGAAAVQLRPATPEEQRYATELLT 642

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                   RQ    ++++AQ+    + E+   L+  +  +      +++Q
Sbjct: 643 RLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 689


>gi|312792984|ref|YP_004025907.1| DNA primase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180124|gb|ADQ40294.1| DNA primase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 617

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 136/629 (21%), Positives = 258/629 (41%), Gaps = 50/629 (7%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
              ++ +L  I I +++  YV   +   N     + A CPFH E+TPSF+ + +K  ++C
Sbjct: 33  ERVVEQVLSKIDIVDVVSMYVPLKKVGAN-----FRALCPFHQERTPSFYVSPAKQIFHC 87

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIRLI 121
           F C V G+ + F+  +   +F E+++ LA  A + +     +  K     K + +LI L 
Sbjct: 88  FGCGVGGNVIHFVMRIENLTFTEALKVLAQRAKIDVDFSQSQSAKDRALAKQKEELISLH 147

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
               ++F   L   ++     Y+ +RGI     + F LG+ P++        ++      
Sbjct: 148 HDCFEYFQSQLYLRKNIDAARYVLKRGIRKETAKQFGLGFCPENNNLYEMLSKKYSKEII 207

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
                   I  + +  +Y RF  RLIFPI  +  +VI FGGR +   +  KY+NSP+T++
Sbjct: 208 DKSG----IFIERNGKNYCRFEGRLIFPIFDTMNRVIGFGGRIIDDSQGPKYMNSPDTLI 263

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K K LY    A +                  ++VEGYMDV+SL Q G+ NVV  LGTA
Sbjct: 264 FSKSKVLYGLNVAKSS------------KEKDFVVVEGYMDVISLHQEGIDNVVGVLGTA 311

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT+    LL +    +VLC D D  G  A +++ D+       G  V  + L   +DPD 
Sbjct: 312 LTQDHSFLLRRYKNEVVLCLDSDQAGKNATFRSADI---LYQNGLMVKVMELENAKDPDE 368

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKL 420
           +I+ +GK AF      ++ ++D   K+ + N   +  D++ +         +  I ++  
Sbjct: 369 YIKKFGKDAFLLKKQNAMFVIDFKIKQISSNYDLSKSDQKFKFVREYFEKILMPITNEVE 428

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y + +    Q      + E +       K           Q+    S  +       
Sbjct: 429 RQEYVKKLSQLTQIDEDAILKEFTKNENIKLKRIESIQHFKQVQQKSNLSEEERIKKNDI 488

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                 LL   +      +     + +  +   +++ L+S + +   E        +   
Sbjct: 489 D-----LLSIYVEWANKSESVRNAVTEDDFCTEDIKILFSSIKNLINEGMELTYSMLLTF 543

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    ++L +L              +  I +++                + +   +++
Sbjct: 544 VNDE---KILSELTSFSSKGFETEEAAKRAIEELKTN--------------NNRMLWLKR 586

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ +   +G+ EK   L  ++ ++  +  
Sbjct: 587 EMLEAQKRGDTEKVLKLQMLIRKIKDRKE 615


>gi|152995073|ref|YP_001339908.1| DNA primase [Marinomonas sp. MWYL1]
 gi|150835997|gb|ABR69973.1| DNA primase [Marinomonas sp. MWYL1]
          Length = 666

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 146/471 (30%), Positives = 231/471 (49%), Gaps = 21/471 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI +LL    +++++   +   +   N     Y A CPFH+EK+PSF  N +K F
Sbjct: 4   RIPDQFIDELLARTDLTDVVASRISLKKTGQN-----YSALCPFHNEKSPSFSLNPNKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C   G+ +SF+       F+++++ LA  AG+ +P        + +   +L++ +
Sbjct: 59  YYCFGCGAGGNAISFVMEHDHLDFVDAIEVLAKDAGMEVPREQG-APDRYEQNAELLKRL 117

Query: 122 EVATDFFHHSLKNARDKRLH--YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             ++ F+   L    DK+    Y   +RG+     ++F LGYAP    +L + +  +  S
Sbjct: 118 SESSQFYQQQLTQHPDKKKATDYLSKDRGLSGQIAKVFGLGYAPPGWDNLLKKVGTRAES 177

Query: 180 EEKIIEAGLLI-DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +E+++  G+LI   D     YDRFR+R+IFPIR SRG+VIAFGGR     E  KYLNSPE
Sbjct: 178 QEQLLLGGMLIEKKDQPGHYYDRFRDRIIFPIRDSRGRVIAFGGRAF-GDEKPKYLNSPE 236

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K + LY  F A                   II+VEGYMDV+ L Q G+ N V++L
Sbjct: 237 TPVFQKSQELYGLFEAKQ----------NTPILDQIIVVEGYMDVIVLAQHGITNAVATL 286

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT++    +R L+KL  +++LCFDGD  G  AA + ++  L  +    +V F+ L  GED
Sbjct: 287 GTSVNSQHIRKLFKLVSKVILCFDGDKAGRAAAIRGLEASLPVMQDEKQVRFLFLPEGED 346

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDS +R  GK AF   + ++  L  +L+       +    +  A+   +    I  I  +
Sbjct: 347 PDSLVRKEGKEAFNHRLEDASSLSHVLFDHARNQVTLGDEEGEAQFARNAMEMIKQIPKE 406

Query: 419 -KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              R    + + D+     +          R    +  H        + +Q
Sbjct: 407 LTFRSVLIRQLSDQSGIDSETLSNTVFKTRRQHTPSEGHEPTHQSHAQQIQ 457


>gi|255690500|ref|ZP_05414175.1| DNA primase [Bacteroides finegoldii DSM 17565]
 gi|260623952|gb|EEX46823.1| DNA primase [Bacteroides finegoldii DSM 17565]
          Length = 709

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 159/695 (22%), Positives = 287/695 (41%), Gaps = 92/695 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++  +V   +R  N     Y   CPFH++KTPSF+ + +KG  
Sbjct: 18  IDQATIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHNDKTPSFYVSPAKGLC 72

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+      S+ E+++ LA    + +   +   E+K  +  +  L  +
Sbjct: 73  KCFACGKGGNAVHFIMEHEQMSYPEALRYLAKKYNIEIKERELSDEEKFVQSERESLFIV 132

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y   RG     IE F+LGY  DS  +  +   QKG+
Sbjct: 133 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTDSHDAFAQEAIQKGY 192

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 193 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLANATKGVKVKYVN 251

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 252 SPESDIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 301

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+R++ + +  + + +DGD  G++A+ + ID+    L  G  V   LL  
Sbjct: 302 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNVKVCLLPD 358

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F+  I E                +   P +RAEL  +L   I+ I
Sbjct: 359 GDDPDSFARKHNSTEFQAFISEHETDFIRFKTNLLLEDAGRDPIKRAELIGNLVQSISVI 418

Query: 416 KDQKLRYYYSQAIRDRLQQLF-----------QKYITEHSGYGRYWKKNARHRDQKGPSQ 464
            +  +R  Y +     L               +    + +      ++ A         +
Sbjct: 419 PEAIVRDVYIKECAQLLHIEDKLLVSEVAKRRETQAEKRAEQTERDRRIAERAASMPQGE 478

Query: 465 RLMQSSLVKGKLSKKPSLR---------------------------------EAALLLTL 491
           +        G +   P +                                  E  +L  +
Sbjct: 479 QAGNMPAPNGDVPLPPEIAEAGYTESPFPPQEDNYASFIPQEGKEGQEFYKFERLILQAV 538

Query: 492 INHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYF 532
           + +                   +++    +L   D+ + N   +++ S   +   +  + 
Sbjct: 539 VRYGEKVMCNLTDEEGNEIPVTVIEYVVNDLKEDDLAFHNPLHRQMLSEAAAHMHDSAFI 598

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRL 590
                     +    +L   L         + + ++  + D  + Y+    L +  ++ +
Sbjct: 599 AERYFLAH-PDPIISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYELVPMLMINFKYAI 657

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           ++ + + +   +       + EK   L+   +E+ 
Sbjct: 658 VTEELKHMLYALQDPALAHDNEKCDSLMQRYNELR 692


>gi|322688669|ref|YP_004208403.1| DNA primase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460005|dbj|BAJ70625.1| DNA primase [Bifidobacterium longum subsp. infantis 157F]
          Length = 696

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 140/710 (19%), Positives = 252/710 (35%), Gaps = 100/710 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKT SF+   S G +
Sbjct: 2   IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDLI 118
           +CF C + GD   ++       F E+V+ LA    + L   +       +     +T L+
Sbjct: 58  HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPARENTGSKRTRLL 117

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E A  FF   +           L  R       E F  GYAP    +L  HL  KGF
Sbjct: 118 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           ++++I++AGL   G      YD FR R+ +PIR S G+ + FG R L + + +  KY+N+
Sbjct: 178 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T L+ K + LY    A + + K             +++VEGY DV+++  AG+   ++
Sbjct: 236 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 285

Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334
           + GTA      +++ +L                        RIV  FDGD  G +AA  A
Sbjct: 286 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 345

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
             L    L   ++    +     DP       G  A   LI  + PL D +         
Sbjct: 346 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 402

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448
                 +      +   +  I+D+ L   Y++    R+    +    E     R      
Sbjct: 403 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVDLEVMRREVMNARRQMHVRD 462

Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490
                  ++  R   +  P      +   +              K+     + E   +  
Sbjct: 463 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 522

Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           LI  P  +    + +L    +  +  + L+  + +         P+ +      +  G +
Sbjct: 523 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 582

Query: 550 LKQLDRQVRDAGLWSATTE-------------------------ANIVDVRQGYQQALAL 584
           L Q+  ++    L     +                                Q Y   L  
Sbjct: 583 LNQVINELAVMPLPLPGDDGGNGAQPPQSNVPGGVGGGAAAVQLRPATPEEQRYATELLT 642

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                   RQ    ++++AQ+    + E+   L+  +  +      +++Q
Sbjct: 643 RLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 689


>gi|317482521|ref|ZP_07941536.1| DNA primase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915943|gb|EFV37350.1| DNA primase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 699

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 140/710 (19%), Positives = 252/710 (35%), Gaps = 100/710 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKT SF+   S G +
Sbjct: 5   IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDLI 118
           +CF C + GD   ++       F E+V+ LA    + L   +       +     +T L+
Sbjct: 61  HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPARENTGSKRTRLL 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E A  FF   +           L  R       E F  GYAP    +L  HL  KGF
Sbjct: 121 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           ++++I++AGL   G      YD FR R+ +PIR S G+ + FG R L + + +  KY+N+
Sbjct: 181 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 238

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T L+ K + LY    A + + K             +++VEGY DV+++  AG+   ++
Sbjct: 239 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 288

Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334
           + GTA      +++ +L                        RIV  FDGD  G +AA  A
Sbjct: 289 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 348

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
             L    L   ++    +     DP       G  A   LI  + PL D +         
Sbjct: 349 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 405

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448
                 +      +   +  I+D+ L   Y++    R+    +    E     R      
Sbjct: 406 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVDLEVMRREVMNARRQMHVRD 465

Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490
                  ++  R   +  P      +   +              K+     + E   +  
Sbjct: 466 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 525

Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           LI  P  +    + +L    +  +  + L+  + +         P+ +      +  G +
Sbjct: 526 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 585

Query: 550 LKQLDRQVRDAGLWSATTE-------------------------ANIVDVRQGYQQALAL 584
           L Q+  ++    L     +                                Q Y   L  
Sbjct: 586 LNQVINELAVMPLPLPGDDGGNGAQPPQSNVPGGVGGGAAAVQLRPATPEEQRYATELLT 645

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                   RQ    ++++AQ+    + E+   L+  +  +      +++Q
Sbjct: 646 RLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 692


>gi|298480246|ref|ZP_06998444.1| DNA primase [Bacteroides sp. D22]
 gi|298273527|gb|EFI15090.1| DNA primase [Bacteroides sp. D22]
          Length = 706

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 160/694 (23%), Positives = 291/694 (41%), Gaps = 91/694 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++  +V   +R  N     Y   CPFH +KTPSF+ + +KG  
Sbjct: 16  IDQVTIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHSDKTPSFYVSPAKGLC 70

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+      S+ E+++ LA    + +   +   E+K  +  +  L  +
Sbjct: 71  KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYNIEIKERELSDEEKFVQSERESLFIV 130

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y   RG     IE F+LGY  +S  +  +   QKG+
Sbjct: 131 NNFARDYFQNILKNHIDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDAFAKEAIQKGY 190

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 191 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 249

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 250 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 299

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+R++ + +  + + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 300 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 356

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F+  I E                +   P +RAEL  +L   I+ I
Sbjct: 357 GDDPDSFARKHNSTEFQAFISEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 416

Query: 416 KDQKLRYYYSQAIRDRL--------------QQLFQKYITEHSGYGRYWKKNARHRDQKG 461
            +  +R  Y +     L              ++   +   E +   R   +      Q  
Sbjct: 417 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRRETQAEKRAEQTERERRMAERTATMSQGT 476

Query: 462 PSQRLMQSS-----------------------------LVKGKLSKKPSLREAALLLTLI 492
           PS+     +                               +GK  ++    E  +L  ++
Sbjct: 477 PSENAPMPNGDIPLPPEIDNGYTEVPPALQEDNYASFIPQEGKEGQEFYKFERLILQAVV 536

Query: 493 NHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +                   +++    +L   ++ + N   +++ S   +   +  +  
Sbjct: 537 RYGEKIMCNLTDEEGNEIPVTVIEYVINDLKEDELAFHNPLHRQMLSEAAAHMHDSNFIA 596

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLL 591
                    +    +L   L         + + ++  + D  + Y+    L +  ++ ++
Sbjct: 597 ERYFLAH-PDPVISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYEMVPMLMINFKYAIV 655

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           + + + +   +       + EK   L+   +E+ 
Sbjct: 656 TEELKHMLYALQDPALAHDNEKCDSLMKRFNELK 689


>gi|293368698|ref|ZP_06615304.1| DNA primase [Bacteroides ovatus SD CMC 3f]
 gi|292636239|gb|EFF54725.1| DNA primase [Bacteroides ovatus SD CMC 3f]
          Length = 706

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 160/694 (23%), Positives = 291/694 (41%), Gaps = 91/694 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++  +V   +R  N     Y   CPFH +KTPSF+ + +KG  
Sbjct: 16  IDQVTIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHSDKTPSFYVSPAKGLC 70

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+      S+ E+++ LA    + +   +   E+K  +  +  L  +
Sbjct: 71  KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYNIEIKERELSDEEKFVQSERESLFIV 130

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y   RG     IE F+LGY  +S  +  +   QKG+
Sbjct: 131 NNFARDYFQNILKNHIDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDAFAKEAIQKGY 190

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 191 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 249

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 250 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 299

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+R++ + +  + + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 300 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 356

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F+  I E                +   P +RAEL  +L   I+ I
Sbjct: 357 GDDPDSFARKHNSTEFQAFISEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 416

Query: 416 KDQKLRYYYSQAIRDRL--------------QQLFQKYITEHSGYGRYWKKNARHRDQKG 461
            +  +R  Y +     L              ++   +   E +   R   +      Q  
Sbjct: 417 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRRETQAEKRAEQTERERRMAERTATMSQGT 476

Query: 462 PSQRLMQSS-----------------------------LVKGKLSKKPSLREAALLLTLI 492
           PS+     +                               +GK  ++    E  +L  ++
Sbjct: 477 PSENAPMPNGDIPLPPEIDNGYTEVPPSLQEDNYASFIPQEGKEGQEFYKFERLILQAVV 536

Query: 493 NHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +                   +++    +L   ++ + N   +++ S   +   +  +  
Sbjct: 537 RYGEKIMCNLTDEEGNEIPVTVIEYVINDLKEDELAFHNPLHRQMLSEAAAHMHDSNFIA 596

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLL 591
                    +    +L   L         + + ++  + D  + Y+    L +  ++ ++
Sbjct: 597 ERYFLAH-PDPVISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYEMVPMLMINFKYAIV 655

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           + + + +   +       + EK   L+   +E+ 
Sbjct: 656 TEELKHMLYALQDPALAHDNEKCDSLMKRFNELK 689


>gi|33240207|ref|NP_875149.1| DNA primase [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|33237734|gb|AAP99801.1| DNA primase [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 686

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 160/664 (24%), Positives = 287/664 (43%), Gaps = 58/664 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 +  +     I +++G++V   ++       ++   CPFHD+  PS   + +K F
Sbjct: 5   RLHPRTLDAVKEKADIVDVVGEHVVLKKKGK-----EFVGICPFHDDNRPSMTVSPAKQF 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117
           Y+CFSC   G+ + FL  L   SF E V  LA    +P+  +D   +++ +     +  L
Sbjct: 60  YFCFSCGAGGNSIKFLMELQRQSFGEVVLELARKYQLPVETLDGPQQERFRQELSRKDRL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
           +R++ +A  +F   L+++       YL + R ++   I+ F+LGYAP S   L  ++   
Sbjct: 120 LRVLSLAKSWFQDQLRSSVGVEALNYLMKTRQLNKGTIDSFELGYAPQSWDGLITYMNHV 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +  S E ++EAGL++   +    YDRFRNRLI PI   +G+VI FGGR+L   +  KYLN
Sbjct: 180 ESISSELLVEAGLVVPRKSENGFYDRFRNRLIVPINDRQGRVIGFGGRSLDGSDP-KYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LF KGK+L+    A N ++K          +   I+VEGY DV++L  AG+ N V
Sbjct: 239 SPETELFEKGKHLFGLDKAANAIRK----------ADKAIVVEGYFDVIALHSAGINNSV 288

Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVL 352
           ++LGTAL+  Q++ L + S   RI+L FD D  G+RAA +AI ++    +     +  + 
Sbjct: 289 AALGTALSSQQIKQLCRCSDSKRIILNFDTDSAGIRAANRAIGEVEHLAMQGQLELRILQ 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L   +DPD +++ +    ++ L   S   +D    +  ++   +  D        L   +
Sbjct: 349 LPSSKDPDEYLQDHSDLDYKVLADNSPLWLDWQIDQILKDSDLSKADHFQRAVSGLVQLL 408

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    LR +Y Q + + L     +   +     R   K  R             S   
Sbjct: 409 GKLPQSALRSHYLQKVAELLSGGQARLALQLEEDLRNQIKGQRWHG--------RSSRFA 460

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVEQ 529
               +      EA +L   ++ P        EL       +  +  + LW  +     + 
Sbjct: 461 LPSETSLRERLEAQILRLYLHFPNHRACIRNELRQRELEDFALHHHRLLWIAISELEEKH 520

Query: 530 ----------------KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
                           +     E+ + L ++   +    L   +           A I +
Sbjct: 521 IGATLLESISRGESNSQQLSEIELSKILLDKLVADNDDSLSSTLTRLLEPDEFQLALIKE 580

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIE----KQIAQVTA--KGEAEKTAILISILHEVHIQ 627
                +  LA+ +R + L R +  IE    +++  +        E+     +  +++ ++
Sbjct: 581 PLLELRGTLAVLERQKALKRCRHLIEAWSGQRLETLETCISALIEQEQKHPNEKYDMELR 640

Query: 628 IHQI 631
           I ++
Sbjct: 641 IDKM 644


>gi|296453705|ref|YP_003660848.1| DNA primase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183136|gb|ADH00018.1| DNA primase [Bifidobacterium longum subsp. longum JDM301]
          Length = 699

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 142/710 (20%), Positives = 253/710 (35%), Gaps = 100/710 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKT SF+   S G +
Sbjct: 5   IRKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118
           +CF C + GD   ++       F E+V+ LA    + L   +    P  E     +T L+
Sbjct: 61  HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPNRENTGSKRTRLL 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E A  FF   +           L  R       E F  GYAP    +L  HL  KGF
Sbjct: 121 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           ++++I++AGL   G      YD FR R+ +PIR S G+ + FG R L + + +  KY+N+
Sbjct: 181 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 238

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T L+ K + LY    A + + K             +++VEGY DV+++  AG+   ++
Sbjct: 239 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 288

Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334
           + GTA      +++ +L                        RIV  FDGD  G +AA  A
Sbjct: 289 TCGTAFGTEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 348

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
             L    L   ++    +     DP       G  A   LI  + PL D +         
Sbjct: 349 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 405

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448
                 +      +   +  I+D+ L   Y++    R+    +    E     R      
Sbjct: 406 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVDLEVMRREVMNARRQMHVRD 465

Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490
                  ++  R   +  P      +   +              K+     + E   +  
Sbjct: 466 EDAYAPKRRFERDEPRVEPGTNPYANPASRKALERRDVVEQAYFKIDDAVFIAEQQFMAV 525

Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           LI  P  +    + +L    +  +  + L+  + +         P+ +      +  G +
Sbjct: 526 LIQVPRAIDRTMFGQLTIEHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 585

Query: 550 LKQLDRQVRDAGLWSATTE-------------------------ANIVDVRQGYQQALAL 584
           L Q+  ++    L     +                                Q Y   L  
Sbjct: 586 LNQVINELAVMPLPLPGDDGGNGAQPPQSNVPGGVGGGAAAVQLRPATPEEQRYATELLT 645

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                   RQ    ++++AQ+    + E+   L+  +  +      +++Q
Sbjct: 646 RLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 692


>gi|256827226|ref|YP_003151185.1| DNA primase, catalytic core [Cryptobacterium curtum DSM 15641]
 gi|256583369|gb|ACU94503.1| DNA primase, catalytic core [Cryptobacterium curtum DSM 15641]
          Length = 642

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 163/627 (25%), Positives = 261/627 (41%), Gaps = 46/627 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I+ +     + +L  + V   +R       D+W CCPFHDEK+PS   + +   +
Sbjct: 7   ISDEDIQKVRAATDLVSLFSERVPLRQRGR-----DFWCCCPFHDEKSPSCKIDPATQQF 61

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           YCF CH  GD  SF+       F ++V+RLA  A + L     +       +  L  + +
Sbjct: 62  YCFGCHEHGDVFSFVMKTEDIDFPDAVRRLADRAHIELHESGGRGGVSRSYKERLRGVCQ 121

Query: 123 VATDFFHHS---LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              DF+H     LK+        YL  RG+       + LG+AP     L  HLR +G++
Sbjct: 122 ETRDFYHQQLMRLKSPEADAARSYLASRGLGGQVPAHWHLGFAP-GHGVLMRHLRSRGYT 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            +++++A +++  DN+ T  DRF NR++FPI   +G+ IAFGGR +  GE  KYLNS +T
Sbjct: 181 VKEMVDANVVVSRDNA-TPRDRFFNRIMFPIHDEQGECIAFGGRVVGSGEP-KYLNSQDT 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LFHK   L+    A   +           +S   I+VEGY DV++L +AGV+NVV++LG
Sbjct: 239 PLFHKSNILFGLDAAKAAM----------TASGQAIVVEGYTDVIALSEAGVKNVVATLG 288

Query: 300 TALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAI-----DLVLCHLIPGNRVNFVLL 353
           TALT   +R L      R++  FDGD+ G RA  +A+      +          +    L
Sbjct: 289 TALTTQHIRSLSRHAGQRVIYLFDGDEAGQRATDRALGFIDESMTPEAGKVRIDLLACTL 348

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP  F+  YG       + ++ PL+     R       +TP+ R          + 
Sbjct: 349 PDGLDPADFVDKYGADELRAELKQAKPLIAFGIDRHLAQFDLSTPEGRTAAFADALALLA 408

Query: 414 HIKDQKLRYYYSQAIR-----------DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
            IKD  L   Y+  I            +RL +L      + +      +       Q   
Sbjct: 409 PIKDSLLAQDYAVQIAGRLHFREDDALERLSRLQPPRRAQVASSSSSSRNADHQDRQVAL 468

Query: 463 SQRLMQSSLVKGKLSKKPSLR----EAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           S +   +S VK     +        EAAL+    +HP +       LA   +      + 
Sbjct: 469 SSQPQTTSSVKPAALPQSERTRRRFEAALIRVCAHHPHLTLTHADALAQTNWHEALHAQA 528

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDV 574
              L     +     P E    + +R     +  + R    + + +       E ++ D+
Sbjct: 529 ADALLDCVAKNPTASPAEAAAAITQRAPDATVLLVSRSPDPSDIAAFAAYLVEELSLGDL 588

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQ 601
                   +   R   L  Q+ E+  Q
Sbjct: 589 SDTIDAYRSQLARPDGLDSQERELLFQ 615


>gi|313140615|ref|ZP_07802808.1| DNA primase [Bifidobacterium bifidum NCIMB 41171]
 gi|313133125|gb|EFR50742.1| DNA primase [Bifidobacterium bifidum NCIMB 41171]
          Length = 696

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 139/707 (19%), Positives = 243/707 (34%), Gaps = 94/707 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKTPSF    + G +
Sbjct: 2   ILKEDVEKVRAAADLYDIVSASVTLRPSG----TGTFVGLCPFHDEKTPSFSVRPALGVW 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
           +CF C + GD   ++       F E+V+ LA    + L   +   + E     +  LI  
Sbjct: 58  HCFGCGLGGDVFGYVEHQENIDFREAVELLADKYHIELHYENSGGRTEHSGSKRARLIEA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A  FF   + +         L  R       E F  GYAP    +L  +L  KGF++
Sbjct: 118 NEEAQRFFMSQIMSKEALAARKLLGGRNFSRADCERFGCGYAPQGWDNLVRYLASKGFTQ 177

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238
           +++++AGL   G      YD FR R  +PIR S G+ + FG R L   + +  KY+N+P+
Sbjct: 178 QEMLDAGLARQGQR--GVYDYFRGRATWPIRDSTGRTLGFGARKLYDDDQIAAKYINTPD 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A + + K             +++VEGY DV+++  AG+   V++ 
Sbjct: 236 TQLYRKTQVLYGIDLAKSSIVKK----------RQVVIVEGYTDVMAMHLAGIDTAVATC 285

Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336
           GTA      +++ +L                        RIV  FDGD  G +AA  A  
Sbjct: 286 GTAFGAEHAKIVRRLVADDSLGAVQLVGPLNVPGQALSSRIVFTFDGDAAGQKAALHAFG 345

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
           L    L   ++    +     DP       G  A   LI  + PL D +           
Sbjct: 346 LDSAFL---SQTFVAVADDNLDPCDLRINRGDQAVRSLIEHAKPLYDFVIDAAIGRFDTT 402

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY---------- 446
               +      +   I  I+D+  R  Y++    R+         E              
Sbjct: 403 YATGQMGAVKAVAPLIAQIRDRSQRDLYARKATRRIGVDLDIMQREVRSAHGQLHVRDED 462

Query: 447 ---GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----------------EAA 486
               R             P               +    R                 E  
Sbjct: 463 AYSPRRRFGAGNGEGAGQPRVEPGSDPYANPAERRALEHRAATEQSYFRIDDAVFICEQQ 522

Query: 487 LLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            + TLI  P  +    +  L +  +     + L+  + +         P+ +      + 
Sbjct: 523 FMATLIQIPRAINRTMFASLNEDSFVAPVFRALFLAIQAAGGLPPDDAPQGLWMHNLNKA 582

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-----QQALALYKRFRLLSRQKEEIEK 600
            G  L  +  ++    L    ++ +      G        A+ L       +R   E+  
Sbjct: 583 GGLTLTTVINELAVLQLPLPPSDQDRAVAGSGVPGAANAAAVQLRPASPAETRYAAELLA 642

Query: 601 QIAQV-----------TAKGEAE--KTAILISILHEVHIQIHQIESQ 634
           ++  +              G  E  +   L+  + ++      +++Q
Sbjct: 643 RLLDMGYMRRIAAARRRMAGMPEGSEKLELLGEITKLETSRKDLQAQ 689


>gi|224283462|ref|ZP_03646784.1| DNA primase [Bifidobacterium bifidum NCIMB 41171]
          Length = 699

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 139/707 (19%), Positives = 243/707 (34%), Gaps = 94/707 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKTPSF    + G +
Sbjct: 5   ILKEDVEKVRAAADLYDIVSASVTLRPSG----TGTFVGLCPFHDEKTPSFSVRPALGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
           +CF C + GD   ++       F E+V+ LA    + L   +   + E     +  LI  
Sbjct: 61  HCFGCGLGGDVFGYVEHQENIDFREAVELLADKYHIELHYENSGGRTEHSGSKRARLIEA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A  FF   + +         L  R       E F  GYAP    +L  +L  KGF++
Sbjct: 121 NEEAQRFFMSQIMSKEALAARKLLGGRNFSRADCERFGCGYAPQGWDNLVRYLASKGFTQ 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238
           +++++AGL   G      YD FR R  +PIR S G+ + FG R L   + +  KY+N+P+
Sbjct: 181 QEMLDAGLARQGQR--GVYDYFRGRATWPIRDSTGRTLGFGARKLYDDDQIAAKYINTPD 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A + + K             +++VEGY DV+++  AG+   V++ 
Sbjct: 239 TQLYRKTQVLYGIDLAKSSIVKK----------RQVVIVEGYTDVMAMHLAGIDTAVATC 288

Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336
           GTA      +++ +L                        RIV  FDGD  G +AA  A  
Sbjct: 289 GTAFGAEHAKIVRRLVADDSLGAVQLVGPLNVPGQALSSRIVFTFDGDAAGQKAALHAFG 348

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
           L    L   ++    +     DP       G  A   LI  + PL D +           
Sbjct: 349 LDSAFL---SQTFVAVADDNLDPCDLRINRGDQAVRSLIEHAKPLYDFVIDAAIGRFDTT 405

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY---------- 446
               +      +   I  I+D+  R  Y++    R+         E              
Sbjct: 406 YATGQMGAVKAVAPLIAQIRDRSQRDLYARKATRRIGVDLDIMQREVRSAHGQLHVRDED 465

Query: 447 ---GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----------------EAA 486
               R             P               +    R                 E  
Sbjct: 466 AYSPRRRFGAGNGEGAGQPRVEPGSDPYANPAERRALEHRAATEQSYFRIDDAVFICEQQ 525

Query: 487 LLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            + TLI  P  +    +  L +  +     + L+  + +         P+ +      + 
Sbjct: 526 FMATLIQIPRAINRTMFASLNEDSFVAPVFRALFLAIQAAGGLPPDDAPQGLWMHNLNKA 585

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-----QQALALYKRFRLLSRQKEEIEK 600
            G  L  +  ++    L    ++ +      G        A+ L       +R   E+  
Sbjct: 586 GGLTLTTVINELAVLQLPLPPSDQDRAVAGSGVPGAANAAAVQLRPASPAETRYAAELLA 645

Query: 601 QIAQV-----------TAKGEAE--KTAILISILHEVHIQIHQIESQ 634
           ++  +              G  E  +   L+  + ++      +++Q
Sbjct: 646 RLLDMGYMRRIAAARRRMAGMPEGSEKLELLGEITKLETSRKDLQAQ 692


>gi|19745865|ref|NP_607001.1| DNA primase [Streptococcus pyogenes MGAS8232]
 gi|19748015|gb|AAL97500.1| putative DNA primase [Streptococcus pyogenes MGAS8232]
          Length = 604

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 158/637 (24%), Positives = 274/637 (43%), Gaps = 52/637 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   GD   F+       F+ESVQ +A   G+ L   P       + +     L+
Sbjct: 66  FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 125

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A  F+H  L      +    YL +RG+D   IE F +G APD    L + L +K 
Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKY 233
           + E +++ +GL    D S T YD FRNR++FP+   RG +IAF GR  +  +      KY
Sbjct: 185 YEEGQLVASGLFHLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADTEKRQAKY 244

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            NS  T+LF+K   LY+   A   + K          +  + L+EG+MDV++  ++G +N
Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+S+GTALT+  +  L +++ ++VL +DGDD G  A  K+++L+      G  V  V +
Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELL-----KGFVVEIVRI 349

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPD F++ +   AF  L+ +S       +    +  + +    +      +   I 
Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  ++ Y   I D L       + +     R   +  R          L+  +L  
Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPM 467

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K     +  E+ L+  L++H  +L E      D  +D + L+ L+  L           
Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 519

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592
                  +      E+ ++++R   +    +   E  + ++         L KR +LL  
Sbjct: 520 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           R   +  K++ + + KG+ +    ++        ++ 
Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604


>gi|113474578|ref|YP_720639.1| DNA primase [Trichodesmium erythraeum IMS101]
 gi|110165626|gb|ABG50166.1| DNA primase [Trichodesmium erythraeum IMS101]
          Length = 675

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 163/689 (23%), Positives = 289/689 (41%), Gaps = 77/689 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            + +D I ++     I ++I +++   +R       DY   CPFH+EKTPSF  + +K  
Sbjct: 5   RFHQDTITEVKQRADIYDVISEHLLLKKRGK-----DYVGLCPFHEEKTPSFTVSTTKQL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117
           YYCF C   G+ L FL  +   SF + V  LA    +P+    P+  ++ +     +  L
Sbjct: 60  YYCFGCGAAGNVLKFLMEIGKSSFSDVVLDLARRYQIPIKTELPENRQEFQRQISLREKL 119

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175
             ++ +A  F+ H+L+  + K    Y    R      I+ F+LGYAP+   ++  + + Q
Sbjct: 120 YEILAIANSFYQHALRQPQGKIALEYLQISRQTSEETIQNFQLGYAPNGWETIYGYLVEQ 179

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           KG   E + + GL++   +    YDRFR+RL+ PI   +G+VI FGGRTL   E  KYLN
Sbjct: 180 KGLPVELVEKTGLILSRKSGTGYYDRFRDRLMIPINDIQGRVIGFGGRTL-SDEQPKYLN 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LF KGK L+    A   + K  +           ++VEGY D ++L  +G+ NVV
Sbjct: 239 SPETELFDKGKTLFALDKAKTAISKQDKA----------VVVEGYFDAIALHASGINNVV 288

Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVL 352
           +SLGTAL+  Q+R L + +   +I+L FD D  G++A  +AI ++         ++  + 
Sbjct: 289 ASLGTALSSIQIRQLLRYTESKQIILNFDADRAGIQATERAIGEMEKFAYSGEVQLRILN 348

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           +  G+D D +++ Y    +++L+V S   +D   +     ++ +  DE  +    +   +
Sbjct: 349 IPDGKDADEYLKTYSGKKYQELLVNSTLWIDWQIQNIVRTKNLSLADEYTKASQEIVKIL 408

Query: 413 NHIKDQKLRYYYSQAIRDRL-----------------------------QQLFQKYITEH 443
             I +     YY Q     L                              +     +   
Sbjct: 409 TKITNDNQFTYYLQYCAQILSQEDTRRVSLIYENLLTQVFINWKKILAKGEFISPPLLVA 468

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
                  + N      K      + S  VKG L  +            ++ P   +E   
Sbjct: 469 KQLKSNQRNNRNFTKGKKNHSPEVLSPPVKGSLLAEAESLLL---RIYLHCPNYRREVKD 525

Query: 504 ELA--DIRYDNNELQKLWSFLFSD--FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
            +   D+++     + LW  + S     E +    +++  +L +  +      LD+    
Sbjct: 526 AMEARDLQFSFAHNRLLWQQIVSAENISENEINQSDDLISKLQDTYWEN----LDKFPNL 581

Query: 560 AGLWSATTEANIVDVRQGYQ--------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
             L+    +     +R   +        + +   KR   L    +E +  +    A+   
Sbjct: 582 KHLFHLDEKTKKNILRAPLEIRSSVATIELIISKKRQSTLLNMWQETDLSVDPELAEKYK 641

Query: 612 EKTAILISILHEVHI-QIHQIESQEAMIE 639
           EK       + E+   ++  I+    +IE
Sbjct: 642 EKFYSESQWIQELERLRLTTIQD---LIE 667


>gi|310287814|ref|YP_003939072.1| DNA primase [Bifidobacterium bifidum S17]
 gi|311064698|ref|YP_003971423.1| DNA primase [Bifidobacterium bifidum PRL2010]
 gi|309251750|gb|ADO53498.1| DNA primase [Bifidobacterium bifidum S17]
 gi|310867017|gb|ADP36386.1| DnaG DNA primase [Bifidobacterium bifidum PRL2010]
          Length = 699

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 139/707 (19%), Positives = 244/707 (34%), Gaps = 94/707 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKTPSF    + G +
Sbjct: 5   ILKEDVEKVRAAADLYDIVSASVTLRPSG----TGTFVGLCPFHDEKTPSFSVRPALGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
           +CF C + GD   ++       F E+V+ LA    + L   +   + E     +  LI  
Sbjct: 61  HCFGCGLGGDVFGYVEHQENIDFREAVELLADKYHIELHYENSGGRTEHSGSKRARLIEA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E A  FF   + +         L  R       E F  GYAP    +L  +L  KGF++
Sbjct: 121 NEEAQRFFMSQIMSKEALAARKLLGGRNFSRADCERFGCGYAPQGWDNLVRYLASKGFTQ 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238
           +++++AGL   G      YD FR R  +PIR S G+ + FG R L   + +  KY+N+P+
Sbjct: 181 QEMLDAGLARQGQR--GVYDYFRGRATWPIRDSTGRTLGFGARKLYDDDQIAAKYINTPD 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T L+ K + LY    A + + K             +++VEGY DV+++  AG+   V++ 
Sbjct: 239 TQLYRKTQVLYGIDLAKSSIVKK----------RQVVIVEGYTDVMAMHLAGIDTAVATC 288

Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336
           GTA      +++ +L                        RIV  FDGD  G +AA  A  
Sbjct: 289 GTAFGAEHAKIVRRLVADDSLGAVQLVGPLNVPGQALSSRIVFTFDGDAAGQKAALHAFG 348

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
           L    L   ++    +     DP       G  A   LI  + PL D +           
Sbjct: 349 LDSAFL---SQTFVAVADDNLDPCDLRINRGDQAVRSLIEHAKPLYDFVIDAAIGRFDTT 405

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY---------- 446
               +      +   I  I+D+  R  Y++    R+         E              
Sbjct: 406 YATGQMGAVKAVAPLIAQIRDRSQRDLYARKATRRIGVDLDIMQREVRSAHGQLHVRDED 465

Query: 447 ---GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----------------EAA 486
               R             P      +        +    R                 E  
Sbjct: 466 AYSPRRRFGAGNGEGAGQPRVEPGSNPYANPAERRALEHRAATEQSYFRIDDAVFICEQQ 525

Query: 487 LLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            + TLI  P  +    +  L +  +     + L+  + +         P+ +      + 
Sbjct: 526 FMATLIQIPRAINRTMFASLNEDSFVAPVFRALFLAIQAAGGLPPDDAPQGLWMHNLNKA 585

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-----QQALALYKRFRLLSRQKEEIEK 600
            G  L  +  ++    L    ++ +      G        A+ L       +R   E+  
Sbjct: 586 GGLTLTTVINELAVLQLPLPPSDQDRAVAGSGVPGAANAAAVQLRPASPAETRYAAELLA 645

Query: 601 QIAQV-----------TAKGEAE--KTAILISILHEVHIQIHQIESQ 634
           ++  +              G  E  +   L+  + ++      +++Q
Sbjct: 646 RLLDMGYMRRIAAARRRMAGMPEGSEKLELLGEITKLETSRKDLQAQ 692


>gi|188995615|ref|YP_001929867.1| DNA primase [Porphyromonas gingivalis ATCC 33277]
 gi|188595295|dbj|BAG34270.1| DNA primase [Porphyromonas gingivalis ATCC 33277]
          Length = 673

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 163/684 (23%), Positives = 287/684 (41%), Gaps = 72/684 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                 + +L    I  ++  +V   +R  N     Y   CPFH ++ PSF  + +K   
Sbjct: 2   IDDLTRERILDAANIVEVVSDFVSLRKRGVN-----YLGLCPFHSDRNPSFSVSPAKNLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CF+C   G  + F+  +   S+ E+++ LA   G+ +   +   E+K     +  +  L
Sbjct: 57  KCFACGEGGSPVHFIMKIEQLSYSEALRYLARKYGIEIHERELTDEEKRLKSDRESMFIL 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A DFF ++L N  + +     Y  +RGI    ++ F+LGY P+ R +  +   +KGF
Sbjct: 117 NEFANDFFKNNLLNTIEGQTIGMTYFRQRGIRPETVQKFQLGYDPEKRSAFSDEAIRKGF 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSP 237
             E +++ GL I  ++S    DRFR R+IFP+++  G+++AFGGR L  K ++ KY+NSP
Sbjct: 177 KPEYLVDTGLSIRYEDSKALDDRFRGRVIFPVQTVSGKIVAFGGRILGKKDKAAKYVNSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+I++ K K LY  F A   + +               LVEGY DV+S+ Q+G++NVV+S
Sbjct: 237 ESIIYSKSKELYGLFLAKKEIAR----------RDKCFLVEGYTDVISMHQSGIENVVAS 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT+ Q+  + + +  I + +DGD  G++AA + I+L    L  G  V  VLL  GE
Sbjct: 287 SGTALTQQQINQIHRFTSNITVLYDGDAAGIKAALRGINL---LLEQGMHVKVVLLPDGE 343

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R +  T FE+ I +          +   +     P  RA+L   +   I  I D
Sbjct: 344 DPDSFARNHTITEFEEYIKQHETDFIRFKTQLYLSDMERDPIRRAQLITDIIGSIALIPD 403

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHS---------------------GYGRYWKKNARH 456
              R  Y Q     L    +    E                       G  R    +   
Sbjct: 404 DITRRVYVQETGQTLSMDERLLAREVQKMRFRRSTYSSPPPPTQQPANGSERKNDSDNLV 463

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA---ILQEQYQ---------- 503
             +   ++    +   +      P+  E  LL  +I +     ++    +          
Sbjct: 464 GTENHSAETPTDNRSAEVGQPYYPAKYEEELLRLIIRYGERKLLIYRHEEGAEKQTPSEV 523

Query: 504 ----------ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                         +    +  +++         +  +   +        +     ++ L
Sbjct: 524 ALAYYIKSDLNADGVDIGTDVFRQILDEAAEQSFDSGFVAAKYFRDHPNAQISHIAVELL 583

Query: 554 -DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
            +R       +    E+N  +  Q   +   L  +   +  Q   ++K+IAQ    G+ E
Sbjct: 584 TNRYALSRIHYGKGDESNAEEDLQMRVERELLTIKNVFIQVQIRALQKEIAQAQKAGDIE 643

Query: 613 KTAILISILHEVHIQIHQIESQEA 636
               +++ L      +++++S+ A
Sbjct: 644 LQLEIMNELRS----MNEMKSELA 663


>gi|126663219|ref|ZP_01734217.1| DNA primase [Flavobacteria bacterium BAL38]
 gi|126624877|gb|EAZ95567.1| DNA primase [Flavobacteria bacterium BAL38]
          Length = 658

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 151/659 (22%), Positives = 274/659 (41%), Gaps = 60/659 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I+ +     +  +IG +V   R  +N          PF +EK+PSF  +  K  +
Sbjct: 2   ISKDTIEKVFETARVEEVIGDFVQLKRAGSNL-----KGLSPFVNEKSPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA    + +       +   +   +  +  +
Sbjct: 57  KDFSSGKGGNAVTFLMEHEHFTYPEAIKYLAVKYNIEIEETIQTDEDVAQANEKESMYLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +FHH+L    + +     Y  ERG  S  I+ F LGY+P++  +  +    KG+
Sbjct: 117 SEFAQKYFHHTLLETEEGKAIGLSYFKERGFTSDTIKKFGLGYSPETWDAFTKEALGKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           + E + + GL I        +DRF+ R++FPI S  G+V+ FGGR L+  +   KYLNSP
Sbjct: 177 NLEYLDKTGLSIV--KEDKQFDRFKGRVMFPIHSMSGRVLGFGGRILTNDKKAAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  F A   + K           +   LVEGY DV+ + Q+G++NVV+S
Sbjct: 235 ESDIYHKSKVLYGIFHAKQAIAKL----------NNCFLVEGYTDVIQMNQSGIENVVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ +L+P I + FDGD  GLRA+ + IDL    L  G  V       G+
Sbjct: 285 SGTALTPDQIRLINRLTPNITVLFDGDAAGLRASIRGIDL---ILEAGMNVKVCTFPDGD 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R            E+               + N P ++A+L   +   I+ I D
Sbjct: 342 DPDSFARKTSYEDLLLYFEENAKDFIQFKASLLMLEAKNDPIKKADLIRDMVVSISKIPD 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGK 475
           +  R  Y +     +           +   +    + N ++++++   + +         
Sbjct: 402 RIKREVYIKECSRIMDISEDVLFNTLAQLVKKDLSEANKQYKEEQKAFEVVKNDISQPAS 461

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQEL------------------------------ 505
                   E  ++  L+ +     E    +                              
Sbjct: 462 KVDIQYELEHKIIQILLLYGNKEAEFEDTILSENEDKEFVEVTEKIKYKVYQRVYLSLQE 521

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            ++   N   + +++ L + F E + F  ++    L E    E+   L  + R+      
Sbjct: 522 DEVELANPVFKAIYNHLIAYFNENEVFELDKYLMHLPEELAQEVTTVLMDEEREVLHNWE 581

Query: 566 TTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
             +  +    +   Q +    +  R+ L++   +E++  ++        E   ++++ L
Sbjct: 582 VQQIYVKQKEETISQYVTETIITLRWYLVNNIIDELKNNLSTEEELDNRESLEMVMAYL 640


>gi|291517239|emb|CBK70855.1| DNA primase, catalytic core [Bifidobacterium longum subsp. longum
           F8]
          Length = 699

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 142/713 (19%), Positives = 253/713 (35%), Gaps = 103/713 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKT SF+   S G +
Sbjct: 2   IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118
           +CF C + GD   ++       F E+V+ LA    + L   +    P  E     +T L+
Sbjct: 58  HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPNRENTGSKRTRLL 117

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E A  FF   +           L  R       E F  GYAP    +L  HL  KGF
Sbjct: 118 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           ++++I++AGL   G      YD FR R+ +PIR S G+ + FG R L + + +  KY+N+
Sbjct: 178 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T L+ K + LY    A + + K             +++VEGY DV+++  AG+   ++
Sbjct: 236 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 285

Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334
           + GTA      +++ +L                        RIV  FDGD  G +AA  A
Sbjct: 286 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 345

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
             L    L   ++    +     DP       G  A   LI  + PL D +         
Sbjct: 346 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 402

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448
                 +      +   +  I+D+ L   Y++    R+    +    E     R      
Sbjct: 403 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVDLEVMRREVMNARRQMHVRD 462

Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490
                  ++  R   +  P      +   +              K+     + E   +  
Sbjct: 463 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 522

Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           LI  P  +    + +L    +  +  + L+  + +         P+ +      +  G +
Sbjct: 523 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 582

Query: 550 LKQLDRQVRDAGLWSATTEA----------------------------NIVDVRQGYQQA 581
           L Q+  ++    L     +                                   Q Y   
Sbjct: 583 LNQVINELAVMPLPLPGDDTGSGAQPVQANVSGGGVGVNGGAAAVQLRPATPEEQRYATE 642

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           L          RQ    ++++AQ+    + E+   L+  +  +      +++Q
Sbjct: 643 LLTRLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 692


>gi|227546321|ref|ZP_03976370.1| DNA primase [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|227213302|gb|EEI81174.1| DNA primase [Bifidobacterium longum subsp. infantis ATCC 55813]
          Length = 702

 Score =  322 bits (826), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 140/713 (19%), Positives = 252/713 (35%), Gaps = 103/713 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKT SF+   S G +
Sbjct: 5   IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDLI 118
           +CF C + GD   ++       F E+V+ LA    + L   +       +     +T L+
Sbjct: 61  HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPARENTGSKRTRLL 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E A  FF   +           L  R       E F  GYAP    +L  HL  KGF
Sbjct: 121 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           ++++I++AGL   G      YD FR R+ +PIR S G+ + FG R L + + +  KY+N+
Sbjct: 181 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 238

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T L+ K + LY    A + + K             +++VEGY DV+++  AG+   ++
Sbjct: 239 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 288

Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334
           + GTA      +++ +L                        RIV  FDGD  G +AA  A
Sbjct: 289 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 348

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
             L    L   ++    +     DP       G  A   LI  + PL D +         
Sbjct: 349 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAMRSLIARAKPLYDFVIDAAISRFD 405

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448
                 +      +   +  I+D+ L   Y++    R+    +    E     R      
Sbjct: 406 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVDLEVMRREVMNARRQMHVRD 465

Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490
                   +  R   +  P      +   +              K+     + E   +  
Sbjct: 466 EDAYAPKHRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 525

Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           LI  P  +    + +L    +  +  + L+  + +         P+ +      +  G +
Sbjct: 526 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 585

Query: 550 LKQLDRQVRDAGLWSATTEA----------------------------NIVDVRQGYQQA 581
           L Q+  ++    L     ++                                  Q Y   
Sbjct: 586 LNQVINELAVMPLPLPGDDSGNGAQPVQANVSGGGVGVNGGAAAVQLRPATPEEQRYATE 645

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           L          RQ    ++++AQ+    + E+   L+  +  +      +++Q
Sbjct: 646 LLTRLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 695


>gi|312133173|ref|YP_004000512.1| dnag [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772370|gb|ADQ01858.1| DnaG [Bifidobacterium longum subsp. longum BBMN68]
          Length = 702

 Score =  322 bits (826), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 140/713 (19%), Positives = 252/713 (35%), Gaps = 103/713 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKT SF+   S G +
Sbjct: 5   IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDLI 118
           +CF C + GD   ++       F E+V+ LA    + L   +       +     +T L+
Sbjct: 61  HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPARENTGSKRTRLL 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E A  FF   +           L  R       E F  GYAP    +L  HL  KGF
Sbjct: 121 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           ++++I++AGL   G      YD FR R+ +PIR S G+ + FG R L + + +  KY+N+
Sbjct: 181 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 238

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T L+ K + LY    A + + K             +++VEGY DV+++  AG+   ++
Sbjct: 239 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 288

Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334
           + GTA      +++ +L                        RIV  FDGD  G +AA  A
Sbjct: 289 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 348

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
             L    L   ++    +     DP       G  A   LI  + PL D +         
Sbjct: 349 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 405

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448
                 +      +   +  I+D+ L   Y +    R+    +    E     R      
Sbjct: 406 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYVRKSAGRIGVDLEVMRREVMNARRQMHVRD 465

Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490
                  ++  R   +  P      +   +              K+     + E   +  
Sbjct: 466 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 525

Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           LI  P  +    + +L    +  +  + L+  + +         P+ +      +  G +
Sbjct: 526 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 585

Query: 550 LKQLDRQVRDAGLWSATTEA----------------------------NIVDVRQGYQQA 581
           L Q+  ++    L     ++                                  Q Y   
Sbjct: 586 LNQVINELAVMPLPLPGDDSGNGAQPVQANVSGGGVGVNGGAAAVQLRPATPEEQRYATE 645

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           L          RQ    ++++AQ+    + E+   L+  +  +      +++Q
Sbjct: 646 LLTRLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQIARMETARKDLQAQ 695


>gi|322690657|ref|YP_004220227.1| DNA primase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455513|dbj|BAJ66135.1| DNA primase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 699

 Score =  322 bits (826), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 142/713 (19%), Positives = 253/713 (35%), Gaps = 103/713 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKT SF+   S G +
Sbjct: 2   IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118
           +CF C + GD   ++       F E+V+ LA    + L   +    P  E     +T L+
Sbjct: 58  HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPNRENTGSKRTRLL 117

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E A  FF   +           L  R       E F  GYAP    +L  HL  KGF
Sbjct: 118 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           ++++I++AGL   G      YD FR R+ +PIR S G+ + FG R L + + +  KY+N+
Sbjct: 178 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T L+ K + LY    A + + K             +++VEGY DV+++  AG+   ++
Sbjct: 236 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 285

Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334
           + GTA      +++ +L                        RIV  FDGD  G +AA  A
Sbjct: 286 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 345

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
             L    L   ++    +     DP       G  A   LI  + PL D +         
Sbjct: 346 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 402

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448
                 +      +   +  I+D+ L   Y +    R+    +    E     R      
Sbjct: 403 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYVRKSAGRIGVDLEVMRREVMNARRQMHVRD 462

Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490
                  ++  R   +  P      +   +              K+     + E   +  
Sbjct: 463 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 522

Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           LI  P  +    + +L    +  +  + L+  + +         P+ +      +  G +
Sbjct: 523 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 582

Query: 550 LKQLDRQVRDAGLWSATTEA----------------------------NIVDVRQGYQQA 581
           L Q+  ++    L     ++                                  Q Y   
Sbjct: 583 LNQVINELAVMPLPLPGDDSGNGAQPVQANVSGGGVGVNGGAAAVQLRPATPEEQRYATE 642

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           L          RQ    ++++AQ+    + E+   L+  +  +      +++Q
Sbjct: 643 LLTRLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQIARMETARKDLQAQ 692


>gi|291456248|ref|ZP_06595638.1| DNA primase [Bifidobacterium breve DSM 20213]
 gi|291381525|gb|EFE89043.1| DNA primase [Bifidobacterium breve DSM 20213]
          Length = 700

 Score =  322 bits (826), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 143/711 (20%), Positives = 254/711 (35%), Gaps = 101/711 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKT SF+   S G +
Sbjct: 5   IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118
           +CF C + GD   ++       F E+V+ LA    + L   +    P  E     +T L+
Sbjct: 61  HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPNRENNGSKRTRLL 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E A  FF   +           L  R       E F  GYAP    +L  HL  KGF
Sbjct: 121 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           ++++I +AGL   G      YD FR R+ +PIR S G+ + FG R L + + +  KY+N+
Sbjct: 181 TQKEIFDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 238

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T L+ K + LY    A + + K             +++VEGY DV+++  AG+   ++
Sbjct: 239 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 288

Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334
           + GTA      +++ +L                        RIV  FDGD  G +AA  A
Sbjct: 289 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKIKDQPLSSRIVFTFDGDAAGQKAALHA 348

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
             L    L   ++    +     DP       G  A   LI  + PL D +         
Sbjct: 349 FGLDSAFL---SQTFVAVADNNLDPCDLRIERGNEAVRSLIANAKPLYDFVIDAAIGRFD 405

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448
                 +      +   +  I+D+ L   Y++    R+    +    E     R      
Sbjct: 406 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKAAGRIGVDLEVMRREVMAARRQMHVRD 465

Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490
                  ++  R   +  P      +   +              K+     + E   + T
Sbjct: 466 EDAYAPKRRFDREERRVEPGTNPYANPAARKTLERRDAAEQAYFKIDDAVFIAEQQFMAT 525

Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           LI  P  +    + +L    +  +  + L+  + +         P+ +      +  G +
Sbjct: 526 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQVIAAAGGLPSDNTPQGLWMHNLTKAGGPM 585

Query: 550 LKQLDRQVRDAGLWSATTEA--------------------------NIVDVRQGYQQALA 583
           L Q+  ++    L     ++                                Q Y   L 
Sbjct: 586 LNQVINELAVMPLPLPGDDSGNGAQPVQPNAPGDAGAPGAAAMQLRPATAEEQRYATELL 645

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                    RQ    ++++AQ+    + E+   L+  +  +      +++Q
Sbjct: 646 TRLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 693


>gi|255535604|ref|YP_003095975.1| DNA primase [Flavobacteriaceae bacterium 3519-10]
 gi|255341800|gb|ACU07913.1| DNA primase [Flavobacteriaceae bacterium 3519-10]
          Length = 640

 Score =  322 bits (826), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 153/656 (23%), Positives = 288/656 (43%), Gaps = 45/656 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +   I +  +IG+YV   R  +N     +    PFHDEKTPSF  + SK  +
Sbjct: 2   ISKATIDKIFSTIRVEEIIGEYVQLKRAGSN-----FKGLSPFHDEKTPSFVVSPSKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV----DPKIEKKEKIQTDLI 118
             FS    G  +SFL  +   ++ E+++  A   G+ +         + ++ +  +  L 
Sbjct: 57  KDFSSGKGGTAISFLMEIESFTYPEALRHAAKKYGIEIEEDKRELTVEEKQSQTDKEVLY 116

Query: 119 RLIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           ++ E+A  FF   L+    + + + Y  ER +    I  F+LGYAP+ + +       KG
Sbjct: 117 KIHEIANSFFQEQLETEEGRAIGYSYFKERDLRDDIISKFQLGYAPEQKDAFTSFAIDKG 176

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNS 236
           +S+E + ++GL I  +N+    DRFR R+IFPI S  G+V+ FGGR L    ++ KYLNS
Sbjct: 177 YSKEILEKSGLSIYPENAPNGIDRFRERVIFPIHSFSGRVLGFGGRILRNNVKTAKYLNS 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET ++HK + LY    +   + K          ++  +LVEGYMDV++L QAG+++VVS
Sbjct: 237 PETEIYHKSQVLYGLNQSKQAISK----------NNLCLLVEGYMDVIALHQAGIEHVVS 286

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S GTALT  Q++L+ +L+  + + FDGD  G++A++++ID++L        +  +L   G
Sbjct: 287 SSGTALTVEQIKLIKRLTENVTILFDGDAAGIKASFRSIDMLLSES---MNIRILLFPDG 343

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPDSF R + +   E+ I                  +   P ++AE    +   +  ++
Sbjct: 344 DDPDSFARKHPQDFVERFISTEAKDFIEFKAEVLLKEAGGDPAKKAEAIRDIVKSVAFVQ 403

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +   +  Y + +  +     Q    E +   +  K+    + +K          + +  +
Sbjct: 404 NALKQEVYLKEVSTKFGLSEQSLFNELNVQQQMRKQQVSPQTRKEQETPQKLQVVPENTV 463

Query: 477 SKKPSL-REAALLLTLINHPA----------------ILQEQYQELADI--RYDNNELQK 517
           +  P L  E  L+  ++ +                  +++E    L +      +    K
Sbjct: 464 TIDPLLVLEEKLVELMLKYGDRVVDRVDEENNGYQITVIEEIIGHLEEDQCEIQSPLNLK 523

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ-LDRQVRDAGLWSATTEANIVDVRQ 576
           +   +     E +          L E   G++    ++              ++  +V  
Sbjct: 524 IIGEIKQGIDENELRAGNFFMTLLDENISGKVADAFVEPYETSDWGKHQIFFSSEEEVVP 583

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIHQI 631
              Q +    +   + +   +++  +       E  K  I ++ L  E+  ++ +I
Sbjct: 584 KLVQDVIFRHKREYIMKIIRDLKLALTDSENNDETYKKIITLTHLRKELDEKLFRI 639


>gi|239622327|ref|ZP_04665358.1| DNA primase [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239514324|gb|EEQ54191.1| DNA primase [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 699

 Score =  322 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 142/713 (19%), Positives = 254/713 (35%), Gaps = 103/713 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKT SF+   S G +
Sbjct: 2   IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118
           +CF C + GD   ++       F E+V+ LA    + L   +    P  E     +T L+
Sbjct: 58  HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPAHENTGSKRTRLL 117

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E A  FF   +           L  R       E F  GYAP    +L  HL  KGF
Sbjct: 118 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           ++++I++AGL   G      YD FR R+ +PIR S G+ + FG R L + + +  KY+N+
Sbjct: 178 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T L+ K + LY    A + + K             +++VEGY DV+++  AG+   ++
Sbjct: 236 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 285

Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334
           + GTA      +++ +L                        RIV  FDGD  G +AA  A
Sbjct: 286 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 345

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
             L    L   ++    +     DP       G  A   LI  + PL D +         
Sbjct: 346 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 402

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448
                 +      +   +  I+D+ L   Y++    R+    +    E     R      
Sbjct: 403 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVDLEVMRREVMNARRQMHVRD 462

Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490
                  ++  R   +  P      +   +              K+     + E   +  
Sbjct: 463 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 522

Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           LI  P  +    + +L    +  +  + L+  + +         P+ +      +  G +
Sbjct: 523 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 582

Query: 550 LKQLDRQVRDAGLWSATTEA----------------------------NIVDVRQGYQQA 581
           L Q+  ++    L     ++                                  Q Y   
Sbjct: 583 LNQVINELAVMPLPLPGDDSGNGAQPVQANVSGGGVGVNGGAAAVQLRPATPEEQRYATE 642

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           L          RQ    ++++AQ+    + E+   L+  +  +      +++Q
Sbjct: 643 LLTRLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 692


>gi|94994082|ref|YP_602180.1| DNA primase [Streptococcus pyogenes MGAS10750]
 gi|94547590|gb|ABF37636.1| DNA primase [Streptococcus pyogenes MGAS10750]
          Length = 626

 Score =  322 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 156/637 (24%), Positives = 274/637 (43%), Gaps = 52/637 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 33  AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 87

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   GD   F+       F+ESVQ +A   G+ L   P       + +     L+
Sbjct: 88  FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 147

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A  F+H  L      +    YL +RG+D   IE F +G APD    L + L +K 
Sbjct: 148 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 206

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKY 233
           + E +++ +GL    D S T YD FRNR++FP+   RG +IAF GR  +  +      KY
Sbjct: 207 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADTEKRQAKY 266

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            NS  T+LF+K   LY+   A   + K          +  + L+EG+MDV++  ++G +N
Sbjct: 267 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 316

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+S+GTALT+  +  L +++ ++VL +DGDD G  A  K+++L+   ++       V +
Sbjct: 317 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 371

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPD F++ +   AF  L+ +S       +    +  + +    +      +   I 
Sbjct: 372 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 431

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  ++ Y   I D L       + +     R   +  R          L+  +L  
Sbjct: 432 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPM 489

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K     +  E+ L+  L++H  +L E      D  +D + L+ L+  L           
Sbjct: 490 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 541

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592
                  +      E+ ++++R   +    +   E  + ++         L KR +LL  
Sbjct: 542 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 589

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           R   +  K++ + + KG+ +    ++        ++ 
Sbjct: 590 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 626


>gi|88658374|ref|YP_507559.1| DNA primase [Ehrlichia chaffeensis str. Arkansas]
 gi|88599831|gb|ABD45300.1| DNA primase [Ehrlichia chaffeensis str. Arkansas]
          Length = 588

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 156/634 (24%), Positives = 278/634 (43%), Gaps = 58/634 (9%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           + I  +   I +S+++GQ V   +R  +         CPFH EKTPSF  ND KG YYCF
Sbjct: 2   NVIDIIKSKIKLSDVVGQRVKLTKRGNSV-----IGLCPFHGEKTPSFTVNDEKGLYYCF 56

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
            C   GD + F S +    F  ++  LA I G+ LP            +T +  +++ AT
Sbjct: 57  GCGANGDVIQFTSDINALDFKGAINYLAEIYGIDLPQST-------NNKTSITPILDAAT 109

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
            +F   L+N        Y+  R I +  ++ F++GYAP     L ++L   GF+ + I  
Sbjct: 110 LWFEEQLRNNH--VAIEYIRSRKISNDTVKKFRMGYAPTY--GLGKYLLSLGFNIDDIKN 165

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
            GLL   +      D F NR+IFPI +S G +I FGGR++   ++ KYLNS  +  F K 
Sbjct: 166 TGLLNSQNQ-----DYFYNRVIFPICNSSGNIIGFGGRSIISTQNPKYLNSKGSAFFQKR 220

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
           +NLY    A+   +K  +          II+VEGYMDVL L Q G+ NVV  LGT++T  
Sbjct: 221 ENLYASHFAVREAKKQGK----------IIVVEGYMDVLMLHQMGISNVVGLLGTSMTSE 270

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
            +  LW+++  I++  DGD  G  A+ K+  L L  + PG  + FV +  G+DP      
Sbjct: 271 HVMYLWEITSEIIVWMDGDIAGKMASIKSASLALSLIRPGCIIKFVDVFTGKDPYDICIN 330

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFN----TPDERAELEIHLKNCINHIKDQKLR 421
            G  +   L+  +  L + +W  E    + N     P++   LE  +K+ ++ I D  + 
Sbjct: 331 DGVDSVIALLDSAKLLSEFIWDYELARVNVNKNSIMPEQCVMLEARIKHYLSQISDNNVV 390

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
            YY +    +++ L            +Y K  ++      P  ++               
Sbjct: 391 KYYKKYFYSQIRNL------------QYSKDKSKFLSTDNPVSKVDNRLKYVSDEFFLEE 438

Query: 482 LREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSD--FVEQKYFLPEEI 537
             +  ++  ++  P +L +   + + +     +  +  L   + +    +       E +
Sbjct: 439 YNQLRVVYVIMEFPELLDDPIIFDQFSKFNISDKNIYVLQQNIINIKVTLCNHVISKEVL 498

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +    E++  + +++  +           VDV +   + + L    + + ++  +
Sbjct: 499 LSELKKNNLDEIVNFVIKRMSTSNFMVLQDREYSVDVSKKEIEKIMLLDHLQCIQKEILD 558

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +         KG+ +    L +   E+  ++ ++
Sbjct: 559 LR-------LKGQRDLAERLSNQAQEIDNRLREL 585


>gi|86140639|ref|ZP_01059198.1| putative DNA primase [Leeuwenhoekiella blandensis MED217]
 gi|85832581|gb|EAQ51030.1| putative DNA primase [Leeuwenhoekiella blandensis MED217]
          Length = 660

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 165/672 (24%), Positives = 277/672 (41%), Gaps = 62/672 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +     +  +IG +V   +  +N     +    PF DE+TPSF  +  K  +
Sbjct: 2   ISKTTIDAVFETARVEEVIGDFVQLKKSGSN-----FKGLSPFSDERTPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA    + +   +   E+KE+   +  +  +
Sbjct: 57  KDFSSGKGGNAVAFLMEHEHFTYPEAIKYLAKKYNIEVEETEQTDEQKEQANERESMYVV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A D+FH +L N+   +     Y  ERG     IE F+LGY+PD   +      +KG+
Sbjct: 117 SEFAKDYFHKTLINSEQGKAIGLSYFKERGFTEETIEKFQLGYSPDVWDAFTSEAIRKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
             E + + GL I        +DRF+ R++FPI S  G+V+ FGGR L+  +   KYLNSP
Sbjct: 177 KLEFLEKTGLTIV--KEEKQFDRFKGRVMFPIHSLSGRVLGFGGRILTNEKKAAKYLNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  + A   + K               LVEGY DV+ L Q G++NVVSS
Sbjct: 235 ESEIYHKSKVLYGIYYAKQAIAK----------EDNCYLVEGYTDVIQLHQLGIENVVSS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ +L+P I + FDGD  G RA+ + IDL    L  G  V       GE
Sbjct: 285 SGTALTPEQIRLINRLTPNITVLFDGDAAGQRASLRGIDL---ILEQGMNVKVCSFPEGE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF + +  T  E  + E+               +   P ++A L   +   I  I D
Sbjct: 342 DPDSFSKAHTLTEVEDFLKENAKDFIQYKASLLVKEAQGDPIKKAGLVRDMVESIAKIPD 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS--QRLMQSSLVKGK 475
              R  Y Q     +           +      KK      +K PS  + +   +  K K
Sbjct: 402 VIKREIYVQECARIMDIKEDVLFNTLAQIRNKGKKEVAKPAEKRPSGGEMVPLKNEEKIK 461

Query: 476 LSKKPSLREAALLLTLI-------NHPAILQEQYQEL----------------------- 505
             ++  L E  ++  LI           ++ ++ +E                        
Sbjct: 462 FERQYEL-EQNIIKLLITFAKEPVEFVDLVYDEDEEGKLIEREEKRELIIYEKIYLDLQE 520

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL----DRQVRDAG 561
            ++ + N++ +K++  L     +++  +  +    L E    E +  +    ++    A 
Sbjct: 521 DEVEFANDDFKKIYPLLIEHLTQEEGEIKLDKLGELLEAAQMEKISSIAFEPEKHELHAW 580

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                    + D          L  R  L+ R+  E  +Q+        A++        
Sbjct: 581 DRHEIYVKTLKDNAGLETVQTLLNLRHFLIQRKMAEFGEQLKTGELPENAQEFMEDFKDY 640

Query: 622 HEVHIQIHQIES 633
             + + I +  +
Sbjct: 641 KTLEVLIAKKRN 652


>gi|94990163|ref|YP_598263.1| DNA primase [Streptococcus pyogenes MGAS10270]
 gi|94543671|gb|ABF33719.1| DNA primase [Streptococcus pyogenes MGAS10270]
          Length = 604

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 157/637 (24%), Positives = 273/637 (42%), Gaps = 52/637 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   GD   F+       F+ESVQ +A   G+ L   P       + +     L+
Sbjct: 66  FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 125

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A  F+H  L      +    YL +RG+D   IE F +G APD    L + L +K 
Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL----SKGESVKY 233
           + E +++ +GL    D S T YD FRNR++FP+   RG +IAF GR       +    KY
Sbjct: 185 YEEGQLVASGLFHLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADMEKRQAKY 244

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            NS  T+LF+K   LY+   A   + K          +  + L+EG+MDV++  ++G +N
Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+S+GTALT+  +  L +++ ++VL +DGDD G  A  K+++L+   ++       V +
Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPD F++ +   AF  L+ +S       +    +  + N    +      +   I 
Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVNNLQSQIVYVEKMAPLIA 409

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  ++ Y   I D L       + +     R   +  R          L+  +L  
Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPM 467

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K     +  E+ L+  L++H  +L E      D  +D + L+ L+  L           
Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQHG------- 519

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592
                  +      E+ ++++R   +    +   E  + ++         L KR +LL  
Sbjct: 520 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           R   +  K++ + + KG+ +    ++        ++ 
Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604


>gi|254415548|ref|ZP_05029308.1| DNA primase catalytic core, N-terminal domain family [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177729|gb|EDX72733.1| DNA primase catalytic core, N-terminal domain family [Microcoleus
           chthonoplastes PCC 7420]
          Length = 655

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 157/657 (23%), Positives = 274/657 (41%), Gaps = 48/657 (7%)

Query: 1   MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           M  P    D I  +   + I +++ + V   +R       DY   CPFH EKTPSF  + 
Sbjct: 1   MQIPRLHPDTIAQVKERVDIVDIVSEQVVLRKRGK-----DYVGLCPFHGEKTPSFTVSP 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---- 113
           +K  YYCF C   G  + FL      SF E V  LA    + +  ++P+  ++ +     
Sbjct: 56  NKQMYYCFGCGTGGTAIKFLMEAGKQSFSEVVLDLARRYQIRVKTLEPEQRQELQRQLSL 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGI-DSHAIEMFKLGYAPDSRYSLREH 172
           Q  L  ++ +A  F+ H+L+  + ++   YL  +       ++ F++GYAP +  +L  +
Sbjct: 116 QEQLYEILALAASFYQHALRQPQGQQALEYLQSQRHLGEETLQQFQVGYAPATWETLYRY 175

Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
            + QKG   + + +AGL++   +    YDRFR+R++ PI   +G+VI FGGR L   E  
Sbjct: 176 LVEQKGKPVQLVKDAGLILPRKSGDGYYDRFRDRIMIPIHDRQGRVIGFGGRAL-GDELP 234

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF+KGK LY    A N +                ++VEGY D ++L + G+
Sbjct: 235 KYLNSPETPLFNKGKTLYALDKAYNAIA----------DQDQAVVVEGYFDAIALHRVGI 284

Query: 292 QNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348
            NVV+SLGTAL+  Q+RLL + +   +I+L FD D  G  AA +AI ++         ++
Sbjct: 285 HNVVASLGTALSLDQMRLLLRYTESNQIILNFDADKAGTIAAERAIGEIADLAYKGQVQL 344

Query: 349 NFVLLSRGEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
             + L  G+D D F+     G   +++L+  +   +     +    +      +  ++  
Sbjct: 345 RILNLPDGKDADEFLTHTPDGAEQYQQLLQNAPLWLHWQIDQLIIGKDLKQAPQFKQVAQ 404

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            +   +  ++D   + YY     ++L     + I       +      R    K   +  
Sbjct: 405 KIVKLLYKLEDVNQQSYYINYCAEKLSLGESQMIPRLVQALQTQLNTLRITPIKKDDKSN 464

Query: 467 MQSSLVK-------GKLSKKPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQK 517
           ++   +         +        EA LL   ++ P   Q     L   D+ +  +  + 
Sbjct: 465 LKQQNLPISIDLSISQEHSLLEEAEALLLRIYLHRPEYRQTIIDILDAKDLLFSLSPHRF 524

Query: 518 LWSFLFSDFVEQKYFL---PEEIHQRLCERGFG-----ELLKQLDRQVRDAGLWSATTEA 569
           LW  +       +  L   PE++   L +R         L++ L             T  
Sbjct: 525 LWQQILDVQSVAQSILLQHPEKLISLLQDRSIQFPEEMVLVEHLFHLNEKRSQDLTRTPL 584

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            I        + +   K  R    Q +++         +  ++        L E+  
Sbjct: 585 AIRTAAACL-EVVTWNKHKRYCIEQWQKLNFATDPKLKEYYSQGIREAYKRLQELQK 640


>gi|34541434|ref|NP_905913.1| DNA primase [Porphyromonas gingivalis W83]
 gi|34397751|gb|AAQ66812.1| DNA primase [Porphyromonas gingivalis W83]
          Length = 673

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 160/684 (23%), Positives = 284/684 (41%), Gaps = 72/684 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                 + +L    I  ++  +V   +R  N     Y   CPFH ++ PSF  + +K   
Sbjct: 2   IDDLTRERILDAANIVEVVSDFVSLRKRGVN-----YLGLCPFHSDRNPSFSVSPAKNLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G  + F+  +   S+ E+++ LA   G+ +   +   E+K  +  +  +  L
Sbjct: 57  KCFACGEGGSPVHFIMKIEQLSYSEALRYLARKYGIKIHERELTDEEKKLKSDRESMFIL 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A DFF ++L N  + +     Y  +RGI    ++ F+LGYAP+ R +  +   +KGF
Sbjct: 117 NEFANDFFKNNLLNTIEGQTIGMTYFRQRGIRPETVQKFQLGYAPEKRSAFSDEAIRKGF 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSP 237
             E +++ GL I  ++S    DRFR R+IFP+++  G+++AFGGR L  K ++ KY+NSP
Sbjct: 177 KPEYLVDTGLSIRYEDSKALDDRFRGRVIFPVQTVSGKIVAFGGRILGKKDKAAKYVNSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+I++ K K LY  F A   + +               LVEGY DV+S+ Q+G++NVV+S
Sbjct: 237 ESIIYSKSKELYGLFLAKKEIAR----------RDKCFLVEGYTDVISMHQSGIENVVAS 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT+ Q+  + + +  I + +DGD  G++AA + I+L    L  G  V   LL  GE
Sbjct: 287 SGTALTQQQINQIHRFTSNITVLYDGDAAGIKAALRGINL---LLEQGMHVKVALLPDGE 343

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R +    FE+ I +          +   +     P  RA+L   +   I  I D
Sbjct: 344 DPDSFARNHTVAEFEEYIEQHETDFIRFKTQLYLSDMERDPIRRAQLITDIIGSIALIPD 403

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR------------ 465
              R  Y Q     L    +    E           +  +                    
Sbjct: 404 DITRRVYVQETGQTLSMDERLLAREVQKMRFRRSTYSSPQPATQQPANGSERKNDSDNLV 463

Query: 466 ---------LMQSSLVKGKLSKKPSLREAALLLTLINHPA---ILQEQYQ---------- 503
                       +   + +    P+  E  LL  +I +     ++    +          
Sbjct: 464 GAENHSAETPTDNRSAEVEQPYYPAKYEEELLRLIIRYGERKLLIYRHEEGAEKQTPSEV 523

Query: 504 ----------ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                         +    +  +++         +  +   +        +     ++ L
Sbjct: 524 ALAYYIKSDLNADGVDIGTDVFRQILDEAAEQSFDSGFVAAKYFRDHPNAQISHIAVELL 583

Query: 554 -DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
            +R       +    E+N  +  Q   +   L  +   +  Q   ++K+IAQ    G+ E
Sbjct: 584 TNRYALSRIHYGKGDESNAEEDLQMRVERELLTIKNVFIQVQIRALQKEIAQAQKAGDIE 643

Query: 613 KTAILISILHEVHIQIHQIESQEA 636
               +++ L      +++++S+ A
Sbjct: 644 LQLEIMNELRS----MNEMKSELA 663


>gi|160900476|ref|YP_001566058.1| DNA primase [Delftia acidovorans SPH-1]
 gi|160366060|gb|ABX37673.1| DNA primase [Delftia acidovorans SPH-1]
          Length = 677

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 155/486 (31%), Positives = 234/486 (48%), Gaps = 26/486 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + P+ FI++LL  + + +++G+YV   +   N     +   CPFH EK+PSF  + SK F
Sbjct: 11  SIPQSFIQELLSRVDVVDIVGRYVQLRKGGAN-----FMGLCPFHSEKSPSFTVSPSKQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------KIQT 115
           Y+CF C   G+ + FL    G  F+E+VQ LA+  G+ +P  D    ++E      + Q 
Sbjct: 66  YHCFGCGKNGNAIGFLMDHAGMGFVEAVQDLASQVGLQVPQDDISPAERERQAAQKQKQA 125

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L  ++E A D +   LK +   +   YL  RG+     + F LGYAP    SL      
Sbjct: 126 TLTDVLEKAGDAYRKHLKAS--PQAIDYLKRRGVSGETAKRFGLGYAPAGWRSLASVF-- 181

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
             + + ++ E+GL+I G+     YDRFR+RL+FPIR+ +G+ I FGGR     E  KYLN
Sbjct: 182 PQYDDPQLEESGLVIVGEGDDKRYDRFRDRLMFPIRNVKGECIGFGGRVF-GDEKPKYLN 240

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +FHKG+ LY  F A   L+             + ++ EGYMDV++L Q G  N V
Sbjct: 241 SPETPVFHKGRELYGLFEARTALR----------DMGYALVTEGYMDVVALAQLGFANAV 290

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTA T   +  L++ +  +V  FDGD  G RAA KA+D  L +      V F+ L  
Sbjct: 291 ATLGTACTPDHIHKLFRFTEAVVFSFDGDAAGRRAARKALDAALPYASDTRSVKFLFLPA 350

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPDSFIR YG  AF + + ++LPL   L +  +E       + RA +  + +     +
Sbjct: 351 EHDPDSFIREYGSEAFARYVGDALPLSRFLIEAASEGCDLGQAEGRAHMASNARPLWTAL 410

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            D  L+      I + +Q   +      S                 P       +     
Sbjct: 411 PDGALKRQLLGEIAELVQLDARDLSDLWSQEAARSGPARGSMAGGAPHPGQASHAPAAPD 470

Query: 476 LSKKPS 481
             +   
Sbjct: 471 WGQPVE 476


>gi|68171252|ref|ZP_00544655.1| DNA primase [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999334|gb|EAM85980.1| DNA primase [Ehrlichia chaffeensis str. Sapulpa]
          Length = 588

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 156/634 (24%), Positives = 278/634 (43%), Gaps = 58/634 (9%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           + I  +   I +S+++GQ V   +R  +         CPFH EKTPSF  ND KG YYCF
Sbjct: 2   NVIDIIKSKIKLSDVVGQRVKLTKRGNSV-----IGLCPFHGEKTPSFTVNDEKGLYYCF 56

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
            C   GD + F S +    F  ++  LA I G+ LP            +T +  +++ AT
Sbjct: 57  GCGANGDVIQFTSDINALDFKGAINYLAEIYGIDLPQST-------NNKTSITPILDAAT 109

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
            +F   L+N        Y+  R I +  ++ F++GYAP     L ++L   GF+ + I  
Sbjct: 110 LWFEEQLRNNH--VAIEYIRSRKISNDTVKKFRIGYAPTY--GLGKYLLSLGFNIDDIKN 165

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
            GLL   +      D F NR+IFPI +S G +I FGGR++   ++ KYLNS  +  F K 
Sbjct: 166 TGLLNSQNQ-----DYFYNRVIFPICNSSGNIIGFGGRSIISTQNPKYLNSKGSAFFQKR 220

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
           +NLY    A+   +K  +          II+VEGYMDVL L Q G+ NVV  LGT++T  
Sbjct: 221 ENLYASHFAVREAKKQGK----------IIVVEGYMDVLMLHQMGISNVVGLLGTSMTSE 270

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
            +  LW+++  I++  DGD  G  A+ K+  L L  + PG  + FV +  G+DP      
Sbjct: 271 HVMYLWEITSEIIVWMDGDIAGKMASIKSASLALSLIRPGCIIKFVDVFTGKDPYDICIN 330

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFN----TPDERAELEIHLKNCINHIKDQKLR 421
            G  +   L+  +  L + +W  E    + N     P++   LE  +K+ ++ I D  + 
Sbjct: 331 DGVDSVIALLDSAKLLSEFIWDYELARVNVNKNSIMPEQCVMLEARIKHYLSQISDNNVV 390

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
            YY +    +++ L            +Y K  ++      P  ++               
Sbjct: 391 KYYKKYFYSQIRNL------------QYSKDKSKFLSTDNPVSKVDNRLKYVSDEFFLEE 438

Query: 482 LREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSD--FVEQKYFLPEEI 537
             +  ++  ++  P +L +   + + +     +  +  L   + +    +       E +
Sbjct: 439 YNQLRVVYVIMEFPELLDDPIIFDQFSKFNISDKNIYVLQQNIINIKVTLCNHVISKEVL 498

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +    E++  + +++  +           VDV +   + + L    + + ++  +
Sbjct: 499 LSELKKNNLDEIVNFVIKRMSTSNFMVLQDREYSVDVSKKEIEKIMLLDHLQCIQKEILD 558

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +         KG+ +    L +   E+  ++ ++
Sbjct: 559 LR-------LKGQRDLAERLSNQAQEIDNRLREL 585


>gi|283458529|ref|YP_003363157.1| DNA primase [Rothia mucilaginosa DY-18]
 gi|283134572|dbj|BAI65337.1| DNA primase [Rothia mucilaginosa DY-18]
          Length = 686

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 157/700 (22%), Positives = 268/700 (38%), Gaps = 88/700 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++     I  +I  YV           G +   CPFHDE+TPSF+     G Y
Sbjct: 5   IRKEDIDEVRARTDIREIIEGYVSLKSAG----IGTFKGLCPFHDERTPSFNVRPQVGSY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   GD  SF+ A+   SF+E+V+RLAA  G  L      P    +  ++  L+  
Sbjct: 61  HCFGCGESGDVYSFVMAMEHTSFVETVERLAARIGYTLHYEGGKPGDRYEAGMRRRLLDA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            ++A +FF  +L +A  +    +L  RG D  A   F +GYAP     L +HLR +GF++
Sbjct: 121 HKIAAEFFERNLYSADAQEAQRFLGARGFDPAATRKFGVGYAPRGWDHLLKHLRSQGFTD 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
           E++   G+  +G+     YDRFR R+I+PIR+  G+ I FG R L   +   KYLN+PET
Sbjct: 181 EELKATGMFSEGNR--GLYDRFRGRIIWPIRTIAGETIGFGARRLFDDDQGPKYLNTPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            L+ K + LY    A   + K          +  +++VEGY DV++   AG+   V++ G
Sbjct: 239 QLYKKSQVLYGIDLAKRDMTK----------TKQVVIVEGYTDVMAAHLAGITTAVATCG 288

Query: 300 TALTEYQLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           TA     ++++ ++         I+  FDGD  G +AA  A +     +    +    + 
Sbjct: 289 TAFGPGHIKMVRRMITDDGSGGEIIFTFDGDAAGQKAAMAAFEEDQRFVA---QTFVAVA 345

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  A   LI    PL +             T + R      +   I 
Sbjct: 346 ENGMDPCDLRLHKGDAAVRSLIASRRPLFEFAIDSTLAKYDLATLEGRVLAMRAIAPIIA 405

Query: 414 HIKDQKLRYYYSQAIRDRLQ-----------------QLFQKYITEHSGYGRYWKKNARH 456
            IKD+ LR  Y + +  +L                  +L +    E     RY + N   
Sbjct: 406 GIKDRDLRPAYMRKVSGQLGLELDEIQRAVAYAQNHPKLSRTQQAEAVAAPRYERLNEGP 465

Query: 457 RDQKG------------PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
           + Q G             +      +       +  +    + +      P       +E
Sbjct: 466 QGQPGMAHTDAPYDPAYDAPPPEDYAAPSAYAGQNAAAHPPSSIQPAAPQPEATAPAVEE 525

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVR-- 558
                  +   +   + L       +    E+       +   R   E+   +       
Sbjct: 526 FLTPDPRDPVARLEKAALEIALQHPELISVEQWRNLATVQFRYRTHREVAAGIIHAATVM 585

Query: 559 ------------------------DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                                        S    ++   +      AL      + ++RQ
Sbjct: 586 APTPGIEWINCVRSGAVEGVHPAIAELAVSPLPVSSAERLPGFVTGALNALF-EQQIARQ 644

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           K ++  ++ Q++A  + E+   +   L E+ ++  Q+ +Q
Sbjct: 645 KSDLMMRLEQLSANPDDEEFEAVQRQLLELEMRRRQLTAQ 684


>gi|222528718|ref|YP_002572600.1| DNA primase [Caldicellulosiruptor bescii DSM 6725]
 gi|222455565|gb|ACM59827.1| DNA primase [Caldicellulosiruptor bescii DSM 6725]
          Length = 617

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 136/629 (21%), Positives = 257/629 (40%), Gaps = 50/629 (7%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
              ++ +L  + I +++  YV   +   N     + A CPFH E+TPSF+ + +K  ++C
Sbjct: 33  ERVVEQVLSKVDIVDVVSMYVPLKKVGVN-----FRALCPFHQERTPSFYVSPAKQIFHC 87

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK---EKIQTDLIRLI 121
           F C V G+ + F+  +   +F E+++ LA  A + +     +  K     K + +LI L 
Sbjct: 88  FGCGVGGNAIHFVMRIENLTFTEALKVLAGKAKIDVDFSQTQSSKDKVLAKQKEELISLH 147

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
               ++F   L    +     Y+ +RGI     + F LG+ P+         R+      
Sbjct: 148 NDCLEYFQRQLYLRENMDAARYVLKRGIRKETAKQFGLGFCPEDNNLYEMLSRKYSKEII 207

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
                   I  + +  +Y RF  RLIFPI  +  +VI FGGR +   ++ KY+NSP+T++
Sbjct: 208 DKSG----IFIERNGKNYCRFEGRLIFPIFDTMNRVIGFGGRIIEDSQAPKYMNSPDTLI 263

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K K LY    A +                  ++VEGYMDV+SL Q G+ NVV  LGTA
Sbjct: 264 FSKSKVLYGLNIAKSS------------KEKDFVIVEGYMDVISLHQEGIDNVVGVLGTA 311

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT+    LL +    +VLC D D  G  A +++ D+       G  V  + L   +DPD 
Sbjct: 312 LTQDHSFLLRRYKNEVVLCLDSDQAGRNATFRSADI---LYQNGLIVKVMELENAKDPDE 368

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKL 420
           +I+ +GK AF      ++  +D   K+ + N   +  D++           +  I ++  
Sbjct: 369 YIKKFGKDAFLLKKQNAMFAIDFKVKQLSSNYDLSKSDQKFRFVREYFEKILMPITNEVE 428

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y + +    Q   +  + E +       K           Q+    +  +       
Sbjct: 429 RQEYIRKLSQLTQIDEEAILKEFTKNENIKLKRLESIQHFKQVQQKSNLTEEERIKKNDI 488

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                 LL   +      +     +A+  +   +++ L+S + +   E        +   
Sbjct: 489 D-----LLSIYVEWANKSESIRNAVAEDDFCTEDIKMLFSSIKNLINEGMELTYSMLLTF 543

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    ++L +L              +  I +++                + +   +++
Sbjct: 544 VNDE---KILSELTSFSSKGFETEEAAKRAIEELKTN--------------NNRMLWLKR 586

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ +   +G+ EK   L  ++ ++  +  
Sbjct: 587 EMLEAQKRGDTEKVLELQMLIRKIKDRKE 615


>gi|299148221|ref|ZP_07041283.1| DNA primase [Bacteroides sp. 3_1_23]
 gi|315920235|ref|ZP_07916475.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|298512982|gb|EFI36869.1| DNA primase [Bacteroides sp. 3_1_23]
 gi|313694110|gb|EFS30945.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 707

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 158/695 (22%), Positives = 290/695 (41%), Gaps = 92/695 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++  +V   +R  N     Y   CPFH +KTPSF+ + +KG  
Sbjct: 16  IDQITIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHSDKTPSFYVSPAKGLC 70

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+      S+ E+++ LA    + +   +   E+K  +  +  L  +
Sbjct: 71  KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYNIEIKERELSDEEKFVQSERESLFIV 130

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y   RG     IE F+LGY  ++  +  +   QKG+
Sbjct: 131 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTEAHDAFAKEAIQKGY 190

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 191 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 249

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 250 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 299

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+R++ + +  + + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 300 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 356

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F+  I E                +   P +RAEL  +L   I+ I
Sbjct: 357 GDDPDSFARKHNSTEFQTFISEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 416

Query: 416 KDQKLRYYYSQAIRDRLQQLF---------------QKYITEHSGYGRYWKKNARHRDQK 460
            +  +R  Y +     L                   +K   +     R  ++ A      
Sbjct: 417 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRRETQAEKRAEQTERERRMAERTAMMSQGS 476

Query: 461 GPSQRLMQSS-----------------------------LVKGKLSKKPSLREAALLLTL 491
            P + +   +                               +GK  ++    E  +L  +
Sbjct: 477 TPPEDVPIPNGDIPLPPEVDGGYTDVPPALQEDSYASFIPQEGKEGQEFYKFERLILQAV 536

Query: 492 INHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYF 532
           + +                   +++    +L   ++ + N   +++ S   +   +  + 
Sbjct: 537 VRYGEKIMCNLTDEEGNEIPVTVIEYVVNDLKEDELAFHNPLHRQMLSEAAAHMHDSNFI 596

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRL 590
                     +    +L   L         + + ++  + D  + Y+    L +  ++ +
Sbjct: 597 AERYFLAH-PDPVISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYEMVPMLMINFKYAI 655

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           ++ + + +   +       + EK   L+   +E+ 
Sbjct: 656 VTEELKHMLYALQDPALAHDNEKCDSLMQRYNELR 690


>gi|148654465|ref|YP_001274670.1| DNA primase [Roseiflexus sp. RS-1]
 gi|148566575|gb|ABQ88720.1| DNA primase [Roseiflexus sp. RS-1]
          Length = 651

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 166/658 (25%), Positives = 264/658 (40%), Gaps = 71/658 (10%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYYCFSC 67
             +   I I   I  YV   +         Y   CPFH + +TP+FH       ++CF C
Sbjct: 8   DQIKEKIDIVEFISAYVPLRKMGR-----SYVGFCPFHPNTRTPAFHVFPDTQSFHCFGC 62

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
              G    FL    G  F E+++RLA  AGV L       E++++++T L+     A  F
Sbjct: 63  KASGSVFDFLMRREGVEFREALERLAQRAGVQLQPRTEDEEQQDRLRTRLLEANAAAAAF 122

Query: 128 FHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEA 186
           F H L K+ R +    Y+  R ID    E F LGYAPD    L  +L  +     + +EA
Sbjct: 123 FRHMLVKSQRGEAARAYVASRRIDDATGEAFLLGYAPDDWELLLGYLTGRRGFSPEEVEA 182

Query: 187 GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK 246
             L     +   YDRFRNRL+FPIR++RG+++ FGGR L      KY+NSP+T LF KGK
Sbjct: 183 AGLAIHHETRGYYDRFRNRLMFPIRNARGEIVGFGGRAL-GDAQPKYMNSPQTPLFDKGK 241

Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306
            LY    A + ++           +   ++VEGY+DV+   Q G +NVV+ LGTALT   
Sbjct: 242 VLYGLDLARDAIR----------HADATVIVEGYIDVIIAHQHGFRNVVAPLGTALTADH 291

Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL------------------IPGNRV 348
           +  + KL+  + L  D D  G+RA  K +  +                           +
Sbjct: 292 VAQVKKLARTVYLALDADAAGVRATLKGLQTLQSQPEGELIAITSPHGVIGLQRQQDVEI 351

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
             + L  G+DPD  I+      +   +  + P +D   +  T +   ++   +AE    +
Sbjct: 352 RILTLPEGKDPDEVIQ-EDPDRWRAALAAARPAMDFYIEALTSDLDLSSGRGKAEAVERV 410

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              +N I     + +Y Q +   +    +  +    G      +  R  DQ   ++   Q
Sbjct: 411 APLLNQIASPVEQAHYVQVLARLIDVEERYILAALGGKAHPEDR-HRPADQPRATRTAEQ 469

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA-----------------DIRYD 511
           S     + S     +E  LL  +I  PA      ++L                  D  + 
Sbjct: 470 SPPDGARSSAPTPTQEEYLLGWVIRFPAARAAVEEKLHRDLSPYPALQSLLSGTIDELFA 529

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
            +E + LW    +         PE   Q L        L  + ++V             +
Sbjct: 530 RDECRALWRAWIAAP---GGSDPETWAQTLSAP-----LNDVAQRVLGLHAPQPQEYRIV 581

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            D  +      A   +  +  R   +I +  A+ T + + E    L+  L +V   I+
Sbjct: 582 NDALEC-----ATILQRDVAKRWLAQIARMQAEATGETDQEM---LLEQLVQVKQFIN 631


>gi|260171923|ref|ZP_05758335.1| DNA primase [Bacteroides sp. D2]
          Length = 693

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 158/695 (22%), Positives = 290/695 (41%), Gaps = 92/695 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++  +V   +R  N     Y   CPFH +KTPSF+ + +KG  
Sbjct: 2   IDQITIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHSDKTPSFYVSPAKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+      S+ E+++ LA    + +   +   E+K  +  +  L  +
Sbjct: 57  KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYNIEIKERELSDEEKFVQSERESLFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y   RG     IE F+LGY  ++  +  +   QKG+
Sbjct: 117 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTEAHDAFAKEAIQKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 177 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+R++ + +  + + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 286 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F+  I E                +   P +RAEL  +L   I+ I
Sbjct: 343 GDDPDSFARKHNSTEFQTFISEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLF---------------QKYITEHSGYGRYWKKNARHRDQK 460
            +  +R  Y +     L                   +K   +     R  ++ A      
Sbjct: 403 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRRETQAEKRAEQTERERRMAERTAMMSQGS 462

Query: 461 GPSQRLMQSS-----------------------------LVKGKLSKKPSLREAALLLTL 491
            P + +   +                               +GK  ++    E  +L  +
Sbjct: 463 TPPEDVPIPNGDIPLPPEVDGGYTDVPPALQEDSYASFIPQEGKEGQEFYKFERLILQAV 522

Query: 492 INHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYF 532
           + +                   +++    +L   ++ + N   +++ S   +   +  + 
Sbjct: 523 VRYGEKIMCNLTDEEGNEIPVTVIEYVVNDLKEDELAFHNPLHRQMLSEAAAHMHDSNFI 582

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRL 590
                     +    +L   L         + + ++  + D  + Y+    L +  ++ +
Sbjct: 583 AERYFLAH-PDPVISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYEMVPMLMINFKYAI 641

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           ++ + + +   +       + EK   L+   +E+ 
Sbjct: 642 VTEELKHMLYALQDPALAHDNEKCDSLMQRYNELR 676


>gi|270295812|ref|ZP_06202012.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273216|gb|EFA19078.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 698

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 157/700 (22%), Positives = 283/700 (40%), Gaps = 96/700 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++  +V   +R  N     Y   CPFHD+KTPSF+ + +KG  
Sbjct: 2   IDQPTIDRILDAAQIYDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPAKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+      S+ E+++ LA   G+ +   +   E+K  +  +  L  +
Sbjct: 57  KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSSEEKIAQSERESLFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y   RG     IE F+LGY  +S  +L +   +KG+
Sbjct: 117 NNFARDYFQNILKNHVDGRSIGMAYFRSRGFRDDIIEKFQLGYCTESHDALAQEALKKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            ++ +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 177 KKDYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLAGATKGVKVKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+R++ + +  + + +DGD  G++A+ + ID+    L  G  V   LL  
Sbjct: 286 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNVKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F+  I E+               +   P +RAEL  +L   I+ I
Sbjct: 343 GDDPDSFARKHNATEFQAFIQENETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISII 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------------------ 457
            +  +R  Y +     L    +  ++E +       +    R                  
Sbjct: 403 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRREKQAEQQAERAERERRSANAARANAEAG 462

Query: 458 --------------DQKGPSQRLMQS------------------SLVKGKLSKKPSLREA 485
                             PSQ L                        +GK  ++    E 
Sbjct: 463 VNGSHTAATSPDAQQAGYPSQSLPAGLPSETPPPFPPEEEYVSFIPQEGKEGQEFYKYER 522

Query: 486 ALLLTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDF 526
            +L  ++ +                   + +    +L   ++ + N   +++ +      
Sbjct: 523 LILKMVVLYGERVMCNVTNEEGQETPITVTEYIVNDLKEDELAFHNPLHRQILTEAAERI 582

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             + +           +    +L  +L                   +        L +  
Sbjct: 583 HNEGFTAERYFVAH-PDPVISKLSVELISNRYQLRKSQIEQMVTDEERLYELIPRLMINF 641

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           ++ ++  + +     +       +  +   ++   +E++ 
Sbjct: 642 KYAIVCEELKHTLFALQNPAIANDETQCNSIMERYNELNK 681


>gi|225009966|ref|ZP_03700438.1| DNA primase [Flavobacteria bacterium MS024-3C]
 gi|225005445|gb|EEG43395.1| DNA primase [Flavobacteria bacterium MS024-3C]
          Length = 662

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 144/676 (21%), Positives = 269/676 (39%), Gaps = 66/676 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I  +     I  +IG +V   +   N     +    PF +E++PSF  +  K  +
Sbjct: 2   ISKNTIDKVYETARIEEVIGDFVQLKKSGAN-----FKGLSPFTEERSPSFMVSPVKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
             FS    G+ ++F+      ++ E+++ LA    + +       E+KE    +  +  +
Sbjct: 57  KDFSSGKGGNVVAFVMEHEHFTYPEAIRYLAKKYQIEIEETIQSDEQKEAANERESMYLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +F   L  +   +     Y  ERG     I+ F+LGY  D      +   +  +
Sbjct: 117 SEYAARYFSEVLLTSAAGQAIGLSYFRERGFTDETIKKFELGYCLDEWDGFTKSAIENKY 176

Query: 179 SEEKIIEAGLLIDGDNSA----TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKY 233
             + +   GL I    +      ++DRF+ R++FPI S  G+V+ FGGR L++ +   KY
Sbjct: 177 DIKYLEATGLTIVKPTNEQATAKTFDRFKGRVMFPIHSMSGRVLGFGGRILTQDKKAAKY 236

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPE+ +++K K LY  + A   + K               LVEGY DV+ + Q+G+ N
Sbjct: 237 LNSPESDIYNKSKVLYGIYIAKQAIAKQ----------DNCYLVEGYTDVIQMHQSGIHN 286

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           VVSS GTALT  Q+RLL +L+  I + FDGD  GLRA+ + IDL    L  G  V     
Sbjct: 287 VVSSSGTALTSDQIRLLSRLTKNITVLFDGDAAGLRASIRGIDL---ILEQGMNVKICTF 343

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             GEDPDSF + +      + +  +               + N P +RAE    +   I 
Sbjct: 344 PEGEDPDSFSKKHVLELLTEYLETNSQDFIQFKASILVKEAANDPVKRAETIRDIVGSIA 403

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA----RHRDQKGPSQRLMQS 469
            I D   R  Y Q+    +    Q      +   +          +         ++++ 
Sbjct: 404 KIPDAIQREVYLQSCAQIMDISEQVLYNTLAQVSKTAASAKGVLQKSGGVPEERFKVVKP 463

Query: 470 SLVKGKLSKKPSLREAALLLTLI---NHPAILQE---------------------QYQEL 505
              + +      + E  ++  L+   NH A  ++                      ++++
Sbjct: 464 EAPEVEKLNVQWVLEKKIIEILLLYGNHKATFEDLILASNEAGELVLTPKKVEQKVFEKV 523

Query: 506 ------ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
                  +I    +  + ++  L + F + + F      +   E     +   L  + + 
Sbjct: 524 YLDLQEDEIELTQDHFKGIYFELIASFNQSENFDLPVFIRNQSEELSASISSILMEEEKY 583

Query: 560 AGLWSATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEK--QIAQVTAKGEAEKT 614
                   +    D   G  Q +    L  R  L+ ++   +++  +  +   +   E+ 
Sbjct: 584 VLGQWEKKDIFPKDKALGVSQLVTETILSLRCFLIKKRMGVMQETTRDQEKDHQEVKEEL 643

Query: 615 AILISILHEVHIQIHQ 630
              + +   ++ ++++
Sbjct: 644 VSYLQLYALLNKKLNR 659


>gi|307719957|ref|YP_003891097.1| DNA primase [Sulfurimonas autotrophica DSM 16294]
 gi|306978050|gb|ADN08085.1| DNA primase [Sulfurimonas autotrophica DSM 16294]
          Length = 556

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 145/594 (24%), Positives = 251/594 (42%), Gaps = 47/594 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I+ L   + I +++G Y++  +   N     + A CPFHDEK+PSF  +  K  Y
Sbjct: 2   ISQDSIEALKARLDIVDVVGNYIELKKAGGN-----FKAPCPFHDEKSPSFVVSPQKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      ++ E++++LA      L   D K  K          +++
Sbjct: 57  HCFGCGAGGDSVKFVMEYEKLNYPEALEKLADSYNFTLTYTDNKHNKPRSQ------VMD 110

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
              +++   L  ++++    Y+ ERGI   +IE F +GYAP+S  +   ++R + FS ++
Sbjct: 111 KLNEWYQMLL--SKNQTALNYIKERGIYESSIEKFGIGYAPES-QATLNYIRSQQFSIKE 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
            I+ G++        +Y RF  R+ FPI S+ G ++ FGGRT+  G   KY+NSPET  F
Sbjct: 168 AIDMGVVGYNQERNQTYARFVERITFPIFSANGSIVGFGGRTI-TGHQAKYVNSPETAFF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           +K + LY +  A   L K             II+ EGY+DV+ L QAG  N V++LGTAL
Sbjct: 227 NKSRLLYAYHLAKQSLHKK----------QEIIITEGYLDVIMLHQAGFDNAVATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K SPR+V+ +DGD  G  AA KA  L       G     V+ S G DP   
Sbjct: 277 THEHLPLLRKGSPRVVMAYDGDKAGRAAALKASKL---LSASGFNGGVVVFSGGLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++         +  E+ P ++ +        +   P  +          +  +    L+ 
Sbjct: 334 VKEGRVEELSNMFREAKPFIEFVLDEILSLYNLKDPKAKESCMQEGIAYLKTL-SPILQE 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   +  RL  L                  +    +        + ++ + + S    +
Sbjct: 393 EYKTYLASRLGGL----------------GVSPSLLKLNTQTNTNRQNIPQQRNSAHRDM 436

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E AL+ T++  P  +++    +       +  +  +S +     +    +   +   + 
Sbjct: 437 WELALIKTILEKPEYIEQVLDVIDPSLLQFHSYE--FSLVLQGKQDAPEVMAIMVDDTIT 494

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                E L                 + NI       ++A  + K    +++ K 
Sbjct: 495 SLKDEEALNAELITFLTKYYERELKKVNIASNISFEEKAFYIRKFRGKIAKLKR 548


>gi|209559153|ref|YP_002285625.1| DNA primase [Streptococcus pyogenes NZ131]
 gi|209540354|gb|ACI60930.1| DNA primase [Streptococcus pyogenes NZ131]
          Length = 604

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 156/637 (24%), Positives = 274/637 (43%), Gaps = 52/637 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   GD   F+       F+ESVQ +A   G+ L   P       + +     L+
Sbjct: 66  FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 125

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A  F+H  L      +    YL +RG+D   IE F +G APD    L + L +K 
Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKY 233
           + E +++ +GL    D S T YD FRNR++FP+   RG +IAF GR  +  +      KY
Sbjct: 185 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADTEKRQAKY 244

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            NS  T+LF+K   LY+   A   + K          +  + L+EG+MDV++  ++G +N
Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+S+GTALT+  +  L +++ ++VL +DGDD G  A  K+++L+   ++       V +
Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPD F++ +   AF  L+ +S       +    +  + +    +      +   I 
Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  ++ Y   I D L       + +     R   +  R          L+  +L  
Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPM 467

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K     +  E+ L+  L++H  +L E      D  +D + L+ L+  L           
Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 519

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592
                  +      E+ ++++R   +    +   E  + ++         L KR +LL  
Sbjct: 520 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           R   +  K++ + + KG+ +    ++        ++ 
Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604


>gi|228473053|ref|ZP_04057810.1| putative DNA primase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275635|gb|EEK14412.1| putative DNA primase [Capnocytophaga gingivalis ATCC 33624]
          Length = 655

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 162/663 (24%), Positives = 283/663 (42%), Gaps = 68/663 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I  +   I +  +IG ++   R  +      Y    PF +E+TPSF  + +K  +
Sbjct: 2   ITKESIDKVYDAIRVEEVIGDFIQLKRSGSG-----YKGLSPFTNERTPSFSVSPAKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G+ ++FL      S++E+++ LA    + L       E+K K   +  L  +
Sbjct: 57  KDFSSGKGGNAIAFLMEHEHFSYVEAIRYLAKKYNIELEETQQSEEEKSKANEKEGLYFV 116

Query: 121 IEVATDFFHHSLKNARDKRLH--YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A D+FH +L  + + +     Y  ERG     IE+F+LGY+PDS  +  +   +KG 
Sbjct: 117 SEYARDYFHKTLLESEEGKAIGGTYFKERGFTPEMIEVFQLGYSPDSWSAFTDEALKKGM 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           +   + + GL I  +++    DRFR R++FPI S  G+V+ FGGR LSK +    KYLNS
Sbjct: 177 NLSHLEKTGLTIVKEDNRK-IDRFRGRVMFPILSMSGRVLGFGGRILSKEKQKEAKYLNS 235

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ ++HK + LY  F A  ++ K               LVEGY DV+ L Q G++NVV+
Sbjct: 236 PESDIYHKSQILYGIFQAKPFIAK----------EDSCYLVEGYTDVIQLYQRGIKNVVA 285

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S GTALT+ Q+RL+ +L+  I + +DGD  GLRAA + +D++L     G  V       G
Sbjct: 286 SSGTALTQEQIRLIRRLTQNITILYDGDSAGLRAAIRGVDMILAE---GMNVRICTFPEG 342

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDSF +       ++    +             + + + P  RA+    +   I+ I 
Sbjct: 343 EDPDSFAKSNSLEEIQEYFKTNTQDFIRFKASLLMSETKDDPLRRADTIRDMIESISKIT 402

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D      Y +     ++          S   +     A+ ++ K   +    + +   + 
Sbjct: 403 DPIKSEIYVRECAQIMEISEDVLFASLSQINQRELIKAQ-QELKKAKKETALAPVQPVER 461

Query: 477 SKKPSLREAALLLTLINHP-----------------------------AILQEQYQEL-- 505
                + E  L+  L+ +                               + ++ + EL  
Sbjct: 462 VSPIMVLERELIKYLLLYGTKECVFYENFLYYDKETGEEKNQELSQRMKVYEKLFLELQA 521

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL--- 562
            +I     E ++ + F    + E       +I   L  +    L+     +     L   
Sbjct: 522 DEIELTTPEFKEFYDFFIRKYQEGLE-DFSKIVHELSPQ-IASLVATFQAEEEKIRLHNW 579

Query: 563 -WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                   +I +       +L L  R  L++++ EE+ +++A + ++G        +  L
Sbjct: 580 GRKDVVVKSIEEDLAVAINSLILNFRKMLINKKIEELREKVASIESQGGDP-----MEEL 634

Query: 622 HEV 624
            EV
Sbjct: 635 QEV 637


>gi|160883189|ref|ZP_02064192.1| hypothetical protein BACOVA_01158 [Bacteroides ovatus ATCC 8483]
 gi|156111414|gb|EDO13159.1| hypothetical protein BACOVA_01158 [Bacteroides ovatus ATCC 8483]
          Length = 693

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 155/695 (22%), Positives = 286/695 (41%), Gaps = 92/695 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++  +V   +R  N     Y   CPFH +KTPSF+ + +KG  
Sbjct: 2   IDQVTIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHSDKTPSFYVSPAKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+      S+ E+++ LA    + +   +   E+K  +  +  L  +
Sbjct: 57  KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYNIEIKERELSDEEKFVQSERESLFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y   RG     IE F+LGY  ++  +  +   QKG+
Sbjct: 117 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTEAHDAFAKEAIQKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 177 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+R++ + +  + + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 286 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F+  I E                +   P +RAEL  +L   I+ I
Sbjct: 343 GDDPDSFARKHNSTEFQTFISEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------------------ 457
            +  +R  Y +     L    +  ++E +       +    +                  
Sbjct: 403 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRRETQAEKRAEQTERERRMAERTAMMSQGS 462

Query: 458 --------------------------DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
                                                    +GK  ++    E  +L  +
Sbjct: 463 TSPEDVPMPNGDIPLPPEVDGGYTDVPPALQEDSYASFIPQEGKEGQEFYKFERLILQAV 522

Query: 492 INHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYF 532
           + +                   +++    +L   ++ + N   +++ S   +   +  + 
Sbjct: 523 VRYGEKIMCNLTDEEGNEIPVTVIEYVVNDLKEDELAFHNPLHRQMLSEAAAHMHDSNFI 582

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRL 590
                     +    +L   L         + + ++  + D  + Y+    L +  ++ +
Sbjct: 583 AERYFLAH-PDPVISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYEMVPMLMINFKYAI 641

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           ++ + + +   +       + EK   L+   +E+ 
Sbjct: 642 VTEELKHMLYALQDPALAHDNEKCDSLMQRYNELR 676


>gi|317479749|ref|ZP_07938871.1| DNA primase [Bacteroides sp. 4_1_36]
 gi|316904119|gb|EFV25951.1| DNA primase [Bacteroides sp. 4_1_36]
          Length = 700

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 155/702 (22%), Positives = 283/702 (40%), Gaps = 98/702 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++  +V   +R  N     Y   CPFHD+KTPSF+ + +KG  
Sbjct: 2   IDQPTIDRILDAAQIYDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPAKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+      S+ E+++ LA   G+ +   +   E+K  +  +  L  +
Sbjct: 57  KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSSEEKIAQSERESLFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D +     Y   RG     IE F+LGY  +S  +L +   +KG+
Sbjct: 117 NNFARDYFQNILKNHVDGQSIGMAYFRSRGFRDDIIEKFQLGYCTESHDALAQEALKKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            ++ +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 177 KKDYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLAGATKGVKVKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+R++ + +  + + +DGD  G++A+ + ID+    L  G  V   LL  
Sbjct: 286 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNVKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F+  I E+               +   P +RAEL  +L   I+ I
Sbjct: 343 GDDPDSFARKHNATEFQAFIQENETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISII 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------------------ 457
            +  +R  Y +     L    +  ++E +       +    R                  
Sbjct: 403 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRREKQAEQQAERAERERRSANAARANAEAG 462

Query: 458 ----------------DQKGPSQRLMQS------------------SLVKGKLSKKPSLR 483
                               PS+ L                        +GK  ++    
Sbjct: 463 VNGSHTAATATSPDAQQAGYPSESLPAGLPSETPPPFPPEEEYVSFIPQEGKEGQEFYKY 522

Query: 484 EAALLLTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFS 524
           E  +L  ++ +                   + +    +L   ++ + N   +++ +    
Sbjct: 523 ERLILKMVVLYGERVMCNVTNEEGQETPITVTEYIVNDLKEDELAFHNPLHRQILTEATE 582

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
               + +           +    +L  +L                   +        L +
Sbjct: 583 RIHNEGFTAERYFVAH-PDPVISKLSVELISNRYQLRKSQIEQMVTDEERLYELIPRLMI 641

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
             ++ ++  + +     +       +  +   ++   +E++ 
Sbjct: 642 NFKYAIVCEELKHTLFALQNPAIANDETQCNSIMERYNELNK 683


>gi|23465713|ref|NP_696316.1| DNA primase [Bifidobacterium longum NCC2705]
 gi|23326394|gb|AAN24952.1| DNA primase [Bifidobacterium longum NCC2705]
          Length = 702

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 142/713 (19%), Positives = 254/713 (35%), Gaps = 103/713 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKT SF+   S G +
Sbjct: 5   IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118
           +CF C + GD   ++       F E+V+ LA    + L   +    P  E     +T L+
Sbjct: 61  HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPAHENTGSKRTRLL 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E A  FF   +           L  R       E F  GYAP    +L  HL  KGF
Sbjct: 121 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           ++++I++AGL   G      YD FR R+ +PIR S G+ + FG R L + + +  KY+N+
Sbjct: 181 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 238

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T L+ K + LY    A + + K             +++VEGY DV+++  AG+   ++
Sbjct: 239 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 288

Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334
           + GTA      +++ +L                        RIV  FDGD  G +AA  A
Sbjct: 289 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 348

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
             L    L   ++    +     DP       G  A   LI  + PL D +         
Sbjct: 349 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 405

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448
                 +      +   +  I+D+ L   Y++    R+    +    E     R      
Sbjct: 406 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVGLEVMRREVMNARRQMHVRD 465

Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490
                  ++  R   +  P      +   +              K+     + E   +  
Sbjct: 466 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 525

Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           LI  P  +    + +L    +  +  + L+  + +         P+ +      +  G +
Sbjct: 526 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 585

Query: 550 LKQLDRQVRDAGLWSATTEA----------------------------NIVDVRQGYQQA 581
           L Q+  ++    L     ++                                  Q Y   
Sbjct: 586 LNQVINELAVMPLPLPGDDSGNGAQPVQANVSGGGVGVNGGAAAVQLRPATPEEQRYATE 645

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           L          RQ    ++++AQ+    + E+   L+  +  +      +++Q
Sbjct: 646 LLTRLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQIARMETARKDLQAQ 695


>gi|237714395|ref|ZP_04544876.1| DNA primase [Bacteroides sp. D1]
 gi|237719149|ref|ZP_04549630.1| DNA primase [Bacteroides sp. 2_2_4]
 gi|262408227|ref|ZP_06084774.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294806783|ref|ZP_06765610.1| DNA primase [Bacteroides xylanisolvens SD CC 1b]
 gi|229445559|gb|EEO51350.1| DNA primase [Bacteroides sp. D1]
 gi|229451528|gb|EEO57319.1| DNA primase [Bacteroides sp. 2_2_4]
 gi|262353779|gb|EEZ02872.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294446065|gb|EFG14705.1| DNA primase [Bacteroides xylanisolvens SD CC 1b]
          Length = 707

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 155/695 (22%), Positives = 286/695 (41%), Gaps = 92/695 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++  +V   +R  N     Y   CPFH +KTPSF+ + +KG  
Sbjct: 16  IDQITIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHSDKTPSFYVSPAKGLC 70

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+      S+ E+++ LA    + +   +   E+K  +  +  L  +
Sbjct: 71  KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYNIEIKERELSDEEKFVQSERESLFIV 130

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y   RG     IE F+LGY  ++  +  +   QKG+
Sbjct: 131 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTEAHDAFAKEAIQKGY 190

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 191 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 249

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 250 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 299

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+R++ + +  + + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 300 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 356

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F+  I E                +   P +RAEL  +L   I+ I
Sbjct: 357 GDDPDSFARKHNSTEFQTFISEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 416

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------------------ 457
            +  +R  Y +     L    +  ++E +       +    +                  
Sbjct: 417 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRRETQAEKRAEQTERERRMAERTAMMSQGS 476

Query: 458 --------------------------DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
                                                    +GK  ++    E  +L  +
Sbjct: 477 TSPEDVPIPNGDIPLPPEVDGGYTDVPPALQEDSYASFIPQEGKEGQEFYKFERLILQAV 536

Query: 492 INHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYF 532
           + +                   +++    +L   ++ + N   +++ S   +   +  + 
Sbjct: 537 VRYGEKIMCNLTDEEGNEIPVTVIEYVVNDLKEDELAFHNPLHRQMLSEAAAHMHDSNFI 596

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRL 590
                     +    +L   L         + + ++  + D  + Y+    L +  ++ +
Sbjct: 597 AERYFLAH-PDPVISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYEMVPMLMINFKYAI 655

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           ++ + + +   +       + EK   L+   +E+ 
Sbjct: 656 VTEELKHMLYALQDPALAHDNEKCDSLMQRYNELR 690


>gi|332667620|ref|YP_004450408.1| DNA primase [Haliscomenobacter hydrossis DSM 1100]
 gi|332336434|gb|AEE53535.1| DNA primase [Haliscomenobacter hydrossis DSM 1100]
          Length = 649

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 161/664 (24%), Positives = 287/664 (43%), Gaps = 58/664 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+  I+++     I  ++G +V+  RR  N     Y   CPFH+EK+PSF+ N ++ 
Sbjct: 1   MILPKS-IQEVNDAAKIEEVVGDFVNLKRRGAN-----YSGLCPFHNEKSPSFNVNPARN 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--DLI 118
            + CF C   GD ++F+      S+ E+V+ LA    + L   +   +++++ Q    L 
Sbjct: 55  IFKCFGCGKAGDPITFVMEHEQLSYPEAVKYLARKYRIELEETESSDQQRQEQQAIDSLF 114

Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            + + A +FF   L +    R     Y  +RG     ++ F LG+A +   +L    + +
Sbjct: 115 LVNQFAQEFFQTQLFDTDKGRSIGLSYFKQRGFREETLKKFGLGFAQNDMDALLRAGKLR 174

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235
           G++ E + + GL+   +      D FR+R++F I +  G+VIAF GR ++K  +  KY+N
Sbjct: 175 GYNAELLKKLGLVTQYER-----DFFRDRVMFSIHNLTGKVIAFAGRIMAKDPKQPKYIN 229

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +++K K LY  F A   ++               +LVEGY DV+SL QAG++NVV
Sbjct: 230 SPETEIYYKSKVLYGIFFAKKAIR----------QFDECLLVEGYTDVISLHQAGIENVV 279

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+RL+ + +  I + +DGD  G++AA + +DL L        V  VLL  
Sbjct: 280 ASSGTALTPDQIRLIKRFTNNIKIIYDGDAAGIKAALRGLDLALAE---DMNVRLVLLPD 336

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPDS+I+  G  AF   + E    +           + + P  RA +   + N I+ I
Sbjct: 337 GEDPDSYIQKVGSEAFLLYLKEKGKDIVQFETELLLKEAGDDPTRRAGVLGQIANTISKI 396

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR---------- 465
           K+   R  Y +  R  L     + I E +   R   +  +  +   P +           
Sbjct: 397 KNPLRRDEYVKVTRQVLGVDEGRMIFEINKLLRRDLEKHQALEGITPPEADGSFPTEEPR 456

Query: 466 -LMQSSLVKGKLSKKPSLREAALLLTLI----------NHPAILQEQYQELADI--RYDN 512
                 + + +LS     +E  +   LI          ++  + Q  +  + D+   +D+
Sbjct: 457 YQTNPVMPETELSVGDEFQEKDIARILISAGGQWFDQKHNTTVAQYVWINIEDVIDYFDS 516

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA--- 569
              +K+   +     + +    +                 L      +  W    E    
Sbjct: 517 ALYKKVVIEILQRINQGQDISVQYFINHADPEVRQLAATVLTSPYEFSENWEKKHEIFLN 576

Query: 570 --NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE-KTAILISILHEVHI 626
                D      +      +++ L R  ++   +I ++    +A+     L   L  +  
Sbjct: 577 QRKPEDNYILDAELAVGQLKYKKLDRLIKQNSAKIKELNNDYDAQSPFIQLNRKLQIMRD 636

Query: 627 QIHQ 630
           ++ +
Sbjct: 637 ELAK 640


>gi|294646296|ref|ZP_06723948.1| DNA primase [Bacteroides ovatus SD CC 2a]
 gi|292638377|gb|EFF56743.1| DNA primase [Bacteroides ovatus SD CC 2a]
          Length = 693

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 155/695 (22%), Positives = 286/695 (41%), Gaps = 92/695 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++  +V   +R  N     Y   CPFH +KTPSF+ + +KG  
Sbjct: 2   IDQITIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHSDKTPSFYVSPAKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+      S+ E+++ LA    + +   +   E+K  +  +  L  +
Sbjct: 57  KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYNIEIKERELSDEEKFVQSERESLFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y   RG     IE F+LGY  ++  +  +   QKG+
Sbjct: 117 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTEAHDAFAKEAIQKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 177 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+R++ + +  + + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 286 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F+  I E                +   P +RAEL  +L   I+ I
Sbjct: 343 GDDPDSFARKHNSTEFQTFISEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------------------ 457
            +  +R  Y +     L    +  ++E +       +    +                  
Sbjct: 403 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRRETQAEKRAEQTERERRMAERTAMMSQGS 462

Query: 458 --------------------------DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
                                                    +GK  ++    E  +L  +
Sbjct: 463 TSPEDVPIPNGDIPLPPEVDGGYTDVPPALQEDSYASFIPQEGKEGQEFYKFERLILQAV 522

Query: 492 INHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYF 532
           + +                   +++    +L   ++ + N   +++ S   +   +  + 
Sbjct: 523 VRYGEKIMCNLTDEEGNEIPVTVIEYVVNDLKEDELAFHNPLHRQMLSEAAAHMHDSNFI 582

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRL 590
                     +    +L   L         + + ++  + D  + Y+    L +  ++ +
Sbjct: 583 AERYFLAH-PDPVISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYEMVPMLMINFKYAI 641

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           ++ + + +   +       + EK   L+   +E+ 
Sbjct: 642 VTEELKHMLYALQDPALAHDNEKCDSLMQRYNELR 676


>gi|114567028|ref|YP_754182.1| DNA primase, DNAG [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337963|gb|ABI68811.1| DNA primase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 593

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 156/591 (26%), Positives = 262/591 (44%), Gaps = 33/591 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y    ++++L  + I  ++ + V+  R+        YW  CPFH EKT SF     K  +
Sbjct: 4   YDDQVLEEILNRLDIVEIVSESVNLSRKGN-----RYWGLCPFHQEKTASFCVTPDKNMF 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           YCF CH  GD  SF+    G  F E+++ LA  AG+ L  V  +  K+   +  +I + +
Sbjct: 59  YCFGCHAGGDIFSFVMKRDGLEFREAMEYLAGKAGIEL--VKSRSGKQTDHRKPVIEVNQ 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A +F+   L     +    YL  RG+++  I+ ++LGYAPD    L EHL +KG+S+E 
Sbjct: 117 AAVEFYQQVLAGKLGQEAREYLRRRGLEAATIKKYQLGYAPDGWTRLEEHLLKKGYSQEY 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +  +GL+   +N    YD  R RL+FPI    G ++  GGR L      KYLN+PET LF
Sbjct: 177 LKLSGLIKRSENRNNFYDLLRRRLVFPIMHYNGDIVGLGGRVL-DDSLPKYLNTPETELF 235

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K K LY  F A + ++           ++  I+VEGYMD + L Q G+ NVV+++GTAL
Sbjct: 236 SKRKVLYGLFQARDSIR----------QANKAIIVEGYMDCIKLQQLGINNVVATMGTAL 285

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q RLL +   +++L +DGD+ G R   +A+++       G + + V L  GEDPD +
Sbjct: 286 TSEQARLLQRYCEKVLLLYDGDEAGQRETIRALEI---LGNEGLKASVVSLPMGEDPDDY 342

Query: 363 IRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           I  YGK  F + I  +    ++    R          + +     +L+  I  +  +  +
Sbjct: 343 IEKYGKEEFLRYIQNNKLSNIEFKINRYLSREKELNLESQIRTINYLRKDIGQLNSELEK 402

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
            YY + +  +L+        E     R      R++           S +++  +     
Sbjct: 403 DYYIKILARKLKIEENIVYRELKKRERDISGIKRNK-----------SKIIRDNIKYVNY 451

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                +L  +   P + +     +     +  +L+ L                E +    
Sbjct: 452 GINEKILAAMFKKPELFEYIKNRIGLEFLEERDLRALAGIYEKLKDNDSDDHLERLGLLA 511

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
            ++GFG    +L   + +  L         +   +  ++  A   +F  L 
Sbjct: 512 NQQGFGSAFARLALLMEEESLPGEMEIKRFIRQVERKEEEQAWKNQFYRLK 562


>gi|187250728|ref|YP_001875210.1| DNA primase [Elusimicrobium minutum Pei191]
 gi|186970888|gb|ACC97873.1| DNA primase [Elusimicrobium minutum Pei191]
          Length = 578

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 154/629 (24%), Positives = 281/629 (44%), Gaps = 57/629 (9%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVD-WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
               I+++   + I  L+ +YV    R         Y  CCPFH+EKTPSF  +  +G +
Sbjct: 2   SDKIIEEIRDRVDIVELVREYVPSLKRAGK-----TYKGCCPFHNEKTPSFTVSQDRGLF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           YCF C   GD  +FL      SF E+ ++LA  AG+     +   ++ EK + +  +L++
Sbjct: 57  YCFGCQTGGDVFAFLMKTENLSFSEAAKKLAERAGLEWKKEEVLTQE-EKNRLEARKLLD 115

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  F++ +L +++      YL +R +    +E F++G+ P    +L +     G++   
Sbjct: 116 FAKVFYNKTLLSSQGNEARGYLKKRSLTKETVEKFEIGFTPQGVDALSKAALANGYNANL 175

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +  AGL   G      Y  FR+R++FPI + RG+ + FGGR   +GE  KYLNSPETILF
Sbjct: 176 LRSAGLAAQGQYGVRDY--FRSRIMFPIINHRGETVGFGGRIFGEGEP-KYLNSPETILF 232

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K + LY    A   ++K          +++ IL+EGYMDV+ + Q+G+ N V+ LGT+ 
Sbjct: 233 SKSRVLYGLNFAGPEIRK----------ANYSILLEGYMDVIGVMQSGIGNCVAPLGTSF 282

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL-LSRGEDPDS 361
            E   +LL + S   V+ FD D  G++A+ +   +    +  G  V        G DPD 
Sbjct: 283 NEEHAKLLKRYSENAVILFDPDAAGIKASLRTALI---LIQQGLFVKVATLGEEGLDPDE 339

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN-TPDERAELEIHLKNCINHIKDQKL 420
           FI  YGK  FE ++ +++ ++D       +    N TP  + ++   L   ++   D  +
Sbjct: 340 FINKYGKEKFENILADAVDIIDFQADVLIKQHGGNLTPQNKTQIAAQLMEIVSVQPDPIV 399

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  + + + ++L                  K     R    P+ ++ ++++         
Sbjct: 400 KSEWIKIVSEKLSV--------EEHLLTPKKTAVNTRRNTPPAPQVKKTNIP-------- 443

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            + E  L+  L+  PA + +  + L + ++ +    ++ S +     +            
Sbjct: 444 -VEEEDLVAWLLKSPAHITQAQE-LDESKFTSRACYEIISTMDEILKQTPS--------- 492

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E     L+K+L +        S        +  +  +   A  +R   LS++   ++ 
Sbjct: 493 -TENIAPMLIKKLPQHENFILKISMAATPKDFNPARDIRDCAAKIERNY-LSKKLAALKA 550

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +I ++      E    L+   +E+  QI 
Sbjct: 551 EIKKMGVGSVPE---ALLRAQNELQKQIK 576


>gi|50913962|ref|YP_059934.1| DNA primase [Streptococcus pyogenes MGAS10394]
 gi|50903036|gb|AAT86751.1| DNA primase [Streptococcus pyogenes MGAS10394]
          Length = 604

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 156/637 (24%), Positives = 274/637 (43%), Gaps = 52/637 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   GD   F+       F+ESVQ +A   G+ L   P       + +     L+
Sbjct: 66  FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNISPSQAVIASQHKHPNHALM 125

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A  F+H  L      +    YL +RG+D   IE F +G APD    L + L +K 
Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKY 233
           + E +++ +GL    D S T YD FRNR++FP+   RG +IAF GR  +  +      KY
Sbjct: 185 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADTEKRQAKY 244

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            NS  T+LF+K   LY+   A   + K          +  + L+EG+MDV++  ++G +N
Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+S+GTALT+  +  L +++ ++VL +DGDD G  A  K+++L+   ++       V +
Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPD F++ +   AF  L+ +S       +    +  + +    +      +   I 
Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISNVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  ++ Y   I D L       + +     R   +  R          L+  +L  
Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPM 467

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K     +  E+ L+  L++H  +L E      D  +D + L+ L+  L           
Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 519

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592
                  +      E+ ++++R   +    +   E  + ++         L KR +LL  
Sbjct: 520 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           R   +  K++ + + KG+ +    ++        ++ 
Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604


>gi|139474033|ref|YP_001128749.1| DNA primase [Streptococcus pyogenes str. Manfredo]
 gi|134272280|emb|CAM30533.1| DNA primase [Streptococcus pyogenes str. Manfredo]
          Length = 604

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 156/637 (24%), Positives = 274/637 (43%), Gaps = 52/637 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   GD   F+       F+ESVQ +A   G+ L   P       + +     L+
Sbjct: 66  FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNISPSQAVIASQHKHPNHALM 125

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A  F+H  L      +    YL +RG+D   IE F +G APD    L + L +K 
Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKY 233
           + E +++ +GL    D S T YD FRNR++FP+   RG +IAF GR  +  +      KY
Sbjct: 185 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADTEKRQAKY 244

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            NS  T+LF+K   LY+   A   + K          +  + L+EG+MDV++  ++G +N
Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+S+GTALT+  +  L +++ ++VL +DGDD G  A  K+++L+   ++       V +
Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPD F++ +   AF  L+ +S       +    +  + +    +      +   I 
Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  ++ Y   I D L       + +     R   +  R          L+  +L  
Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPM 467

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K     +  E+ L+  L++H  +L E      D  +D + L+ L+  L           
Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 519

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592
                  +      E+ ++++R   +    +   E  + ++         L KR +LL  
Sbjct: 520 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           R   +  K++ + + KG+ +    ++        ++ 
Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604


>gi|256425403|ref|YP_003126056.1| DNA primase [Chitinophaga pinensis DSM 2588]
 gi|256040311|gb|ACU63855.1| DNA primase [Chitinophaga pinensis DSM 2588]
          Length = 662

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 154/677 (22%), Positives = 296/677 (43%), Gaps = 65/677 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I+ +L  I I  ++G +V   +R  N     Y   CPFH+EK+PSF    SK  +
Sbjct: 2   ISQNTIQQILSRIDIVEIVGNFVKLKKRGAN-----YLGLCPFHNEKSPSFTVTPSKEIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CF C   G+ + F+      S++E+++ LA    VP+      P++ +++ +   L  +
Sbjct: 57  KCFGCGQSGNAIKFIMEHEKYSYVEALRWLAQKYDVPIEETEVSPEVRQQQLMADSLYII 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A ++F ++L N  + +     Y +ERG     I  F+LGY+ ++  +  +    KG+
Sbjct: 117 NNFAREYFSNTLFNTEEGQNVGLSYFEERGFTQETIRKFQLGYSLNTWDAFTKTALAKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           + + + + GL+   +      D +R R+IFPI +  G+V+ FG R L K +   KY+NSP
Sbjct: 177 NLDYLQKTGLVTVRNEQPG--DNYRGRVIFPIHNQSGKVLGFGARILVKNDRAPKYVNSP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E  ++ K + LY  + A + + K           +  +LVEGY DV+SL QAG++NVV+S
Sbjct: 235 ENEIYVKNRVLYGTYFARHAIDKL----------NECLLVEGYTDVVSLHQAGIENVVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GT+LT++QLRL+ K +  + + FDGD+ G++AA + +D+    +  G  V  VL+   E
Sbjct: 285 SGTSLTQHQLRLIKKYTNNLTILFDGDNAGVKAALRGLDMA---IEEGLNVKLVLIPDKE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI-- 415
           DPDS+++  G  AF + I  +     +   + +   + N    +++L   +   I+ I  
Sbjct: 342 DPDSYVQKIGADAFREFIANNKQDFVLFKLQISMQEAGNDSSRKSQLVNEIAETISKIDK 401

Query: 416 -KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
            +D   +  Y +     L+   Q  I   + + R   +    +  +  +     +  +  
Sbjct: 402 TEDFTRQQDYIRQCSQLLKIDEQGLINLVNKFIRERFQKKEQQFNRENNNNNNAAPAMDD 461

Query: 475 KLSK---------------------KPSLREAALLLTLINHPA--ILQEQYQELADIRYD 511
            LS                          +E  L+  L+        +E    +AD  + 
Sbjct: 462 DLSPEAIAAMEAMENGGEPAVNFFNPDEKQERELVKILLRFGDKPFSEEDQSTVADYIFH 521

Query: 512 NN-ELQKLWS-----FLFSDFV---EQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDA 560
              + + L        +  ++    +Q     ++      ++    L+  +  D++   +
Sbjct: 522 LPYDFESLADNEMVKRILREYKVMYDQDSLPDKKWFLYHNDQEVATLVVAIMEDKEAELS 581

Query: 561 GLWSATTEANIVDVRQGYQQALAL---YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             W    E + V     Y +       Y   R + +   E ++++ + T   +  K   +
Sbjct: 582 TAWKDKFEIDTVYGDNAYLKDTISTTNYLILRKIRKMIMENQQEMERSTVFEDQIKCIEM 641

Query: 618 ISILHEVHIQIHQIESQ 634
              L  +  ++ Q    
Sbjct: 642 HKHLKVLENELTQGLGT 658


>gi|282857455|ref|ZP_06266688.1| DNA primase [Pyramidobacter piscolens W5455]
 gi|282584740|gb|EFB90075.1| DNA primase [Pyramidobacter piscolens W5455]
          Length = 580

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 158/621 (25%), Positives = 264/621 (42%), Gaps = 46/621 (7%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            + +  +   + I  L+G  V   ++  N     Y   CPFHDEKTPSF  +  +G ++C
Sbjct: 3   DEIVAKIKDAVDIVELVGDSVRLVKKGRN-----YSGLCPFHDEKTPSFIVSPDRGTWHC 57

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C   GD  SF+    G SF E+++ L   AG+ +P    + +      TDL  ++E+A
Sbjct: 58  FGCGKGGDVFSFVMEKEGLSFPEALEYLGRRAGIEIPRRKNRGQT-----TDLYSVMEMA 112

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
            DF+   LK A       YL  R +     + F+LG++P +  +L + LR++G ++E+++
Sbjct: 113 VDFYRAELKGAAGAVGKGYLSRRSMSVQDADAFELGWSPSAWRALNDALRREGVTQEQLL 172

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
           + GL+I G+     YDRFR R+IFPIR+  G+ IA GGR +  GE  KYLNSPE  L++K
Sbjct: 173 KCGLVIQGEKGC--YDRFRGRVIFPIRNVSGRAIALGGR-IVDGEGAKYLNSPEGPLYNK 229

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            +NLY    A N +++  R           ILVEGYMD + L   G +  V+SLGT+LTE
Sbjct: 230 KENLYLLDKAKNAIREKGRS----------ILVEGYMDAIRLHMHGHRETVASLGTSLTE 279

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
            Q  LL + S +  +C+D D  G  A  + + +       G +V  VL   G+DPD  ++
Sbjct: 280 EQALLLKRFSDKCYICYDSDTAGQNATLRGMYI---LQRAGLQVFVVLFPGGKDPDEMLQ 336

Query: 365 CYGKTA-FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
             G    F + +  + PLV                D +A+    L   +  +        
Sbjct: 337 SEGGEQLFNEAVENARPLVLHHIGLFKAA---AEKDGQAKAAEELLEGMAQLT-AVELAP 392

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y Q I   +     +  +E +   R  + + R  +      + ++      +        
Sbjct: 393 YMQEIAHAVGLPDYQLASELNRLRRGRRLSPRAEESLAGDVQPLELETADSETPPNCDPA 452

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  LL  L     +            + +  L+ +   L +   EQ   L     +    
Sbjct: 453 ETGLLYLLWISRELRMSASVAEVVRMFQDPRLKDIAGALLT--GEQPESLEHRWLEMGDH 510

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                L          A      +  ++   ++         K+ R +      ++  + 
Sbjct: 511 FPMSAL-------SGGASFCDTLSGTDMEKWQKLSADQGRRVKQARYIQ-----LKAMMF 558

Query: 604 QVTAK-GEAEKTAILISILHE 623
           +  A   +  + + L + L  
Sbjct: 559 RGEASPEDLTEYSALAAELKR 579


>gi|312622968|ref|YP_004024581.1| DNA primase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203435|gb|ADQ46762.1| DNA primase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 617

 Score =  321 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 136/629 (21%), Positives = 257/629 (40%), Gaps = 50/629 (7%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
              ++ +L  + I +++  YV   +   N     + A CPFH E+TPSF+ + +K  ++C
Sbjct: 33  ERVVEQVLSKVDIVDVVSMYVPLKKVGVN-----FRALCPFHQERTPSFYVSPAKQIFHC 87

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK---EKIQTDLIRLI 121
           F C V G+ + F+  +   +F E+++ LA  A + +     +  K     K + +LI L 
Sbjct: 88  FGCGVGGNAIHFVMRIENLTFTEALKVLAEKAKINVDFSQTQSSKDKVLAKQKEELISLH 147

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
               ++F   L    +     Y+ +RGI     + F LG+ P+         R+      
Sbjct: 148 NDCLEYFQRQLYLRENMDAARYVLKRGIRKETAKQFGLGFCPEDNNLYEMLSRKYSKEII 207

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
                   I  + +  +Y RF  RLIFPI  +  +VI FGGR +   ++ KY+NSP+T++
Sbjct: 208 DKSG----IFIERNGKNYCRFEGRLIFPIFDTMNRVIGFGGRIIDDSQAPKYMNSPDTLI 263

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K K LY    A +                  ++VEGYMDV+SL Q G+ NVV  LGTA
Sbjct: 264 FSKSKVLYGLNIAKSS------------KEKDFVIVEGYMDVISLHQEGIDNVVGVLGTA 311

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT+    LL +    +VLC D D  G  A +++ D+       G  V  + L   +DPD 
Sbjct: 312 LTQDHSFLLRRYKNEVVLCLDSDQAGRNATFRSADI---LYQNGLIVKVMELENAKDPDE 368

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKL 420
           +I+ +GK AF      ++ ++D   K+ + N   +  D++           +  I ++  
Sbjct: 369 YIKKFGKDAFLLKKQNAMFVIDFKVKQLSSNYDLSKSDQKFRFVREYFEKILMPITNEVE 428

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y + +    Q   +  + E +       K           Q+    +  +       
Sbjct: 429 RQEYIRKLSQLTQIDEEAILKEFTKNENIKLKRLESIQHFKQVQQKSNLTEEERIKKNDI 488

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                 LL   +      +     +A+  +   +++ L+S + +   E        +   
Sbjct: 489 D-----LLSIYVEWANKSESIRNAVAEDDFCTEDIKMLFSSIKNLINEGMELTYSMLLTF 543

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +     +L +L              +  I +++                + +   +++
Sbjct: 544 VDDE---RVLSELTSFSSKGFETEEAAKKAIDELKTN--------------NSRMLWLKR 586

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++ +   +G+ EK   L  ++ ++  +  
Sbjct: 587 EMLEAQKRGDNEKVLKLQMLIRKIKDRKE 615


>gi|160890816|ref|ZP_02071819.1| hypothetical protein BACUNI_03261 [Bacteroides uniformis ATCC 8492]
 gi|156859815|gb|EDO53246.1| hypothetical protein BACUNI_03261 [Bacteroides uniformis ATCC 8492]
          Length = 698

 Score =  321 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 157/700 (22%), Positives = 284/700 (40%), Gaps = 96/700 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++  +V   +R  N     Y   CPFHD+KTPSF+ + +KG  
Sbjct: 2   IDQPTIDRILDAAQIYDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPAKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+      S+ E+++ LA   G+ +   +   E+K  +  +  L  +
Sbjct: 57  KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSSEEKIAQGERESLFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y   RG     IE F+LGY  +S  +L +   +KG+
Sbjct: 117 NNFARDYFQNILKNHVDGRSIGMAYFRSRGFRDDIIEKFQLGYCTESHDALAQEALKKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            ++ +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 177 KKDYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLAGATKGVKVKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+R++ + +  + + +DGD  G++A+ + ID+    L  G  V   LL  
Sbjct: 286 ASSGTALTSGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNVKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F+  I E+               +   P +RAEL  +L   I+ I
Sbjct: 343 GDDPDSFARKHNATEFQAFIQENETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISII 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK----------------------- 452
            +  +R  Y +     L    +  ++E +       +                       
Sbjct: 403 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRREKQAEQQAERAERERRSANAARANAETG 462

Query: 453 ---------NARHRDQKGPSQRLMQS------------------SLVKGKLSKKPSLREA 485
                    N   +    PSQ L                        +GK  ++    E 
Sbjct: 463 VNGSHTAATNPDAQQAGYPSQSLPAGLPSETPPPFPPEEEYVSFIPQEGKEGQEFYKYER 522

Query: 486 ALLLTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDF 526
            +L  ++ +                   + +    +L   ++ + N   +++ +      
Sbjct: 523 LILKMVVLYGERVMCNVTNEEGQETPITVTEYIVNDLKEDELAFHNPLHRQILTEAAERI 582

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             + +           +    +L  +L                   +        L +  
Sbjct: 583 HNEGFTAERYFVAH-PDPVISKLSVELISNRYQLRKSQIEQMVTDEERLYELIPRLMINF 641

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           ++ ++  + +     +       +  +   ++   +E++ 
Sbjct: 642 KYAIVCEELKHTLFALQNPAIANDETQCNSIMERYNELNK 681


>gi|254443947|ref|ZP_05057423.1| DNA primase catalytic core, N-terminal domain family
           [Verrucomicrobiae bacterium DG1235]
 gi|198258255|gb|EDY82563.1| DNA primase catalytic core, N-terminal domain family
           [Verrucomicrobiae bacterium DG1235]
          Length = 631

 Score =  321 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 156/648 (24%), Positives = 269/648 (41%), Gaps = 55/648 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+DL   I I +++ + V   +  +     DY    PF++EKTPSF+ +  KGF
Sbjct: 3   AIKPSSIRDLKDRINIYDVVSREVALKKAGS-----DYKGLSPFNNEKTPSFYVSPDKGF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           Y CFS    GD +SF+      +F+E+V+ LA      L         +E+   + +L  
Sbjct: 58  YKCFSSGNAGDAISFVMETERLTFVEAVETLAKRFNFELEYEQGSSHAREERSLRQELFD 117

Query: 120 LIEVATDFFHHSLKNARDKRLH---YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L E+ATDF+H               Y+L+ R         FK+G+AP +  +L E + ++
Sbjct: 118 LHEIATDFYHEQFLATNKAGDWIRNYWLEGRKFSLDIASEFKIGFAPINSVALGEIVVKR 177

Query: 177 GFSEEKIIEAGLLI--DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL------SKG 228
           GFS+E I  +GL     G +      RFR RL+ PIR  +G+V AF  R L         
Sbjct: 178 GFSKEAIEASGLFYAKRGIDPHRMGYRFRGRLMIPIRDHQGRVTAFTARQLEVTPKDDPS 237

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
              KY+NSPET +FHKG  L+N   A    +               ++VEG +D +    
Sbjct: 238 HEAKYINSPETPIFHKGNLLFNLDRARLEAK----------PDKPFVMVEGQLDAIRCWS 287

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
            G+   V+  GT +TE QLRLL +  P++++  DGD  G +AA + + L L     G   
Sbjct: 288 VGLTTAVAPQGTGITEAQLRLLKRYEPQLIVLLDGDSAGQKAALRMLPLTLAQ---GVES 344

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
            F+ L+  EDPD   R  G  A E+L+   L  +    +         TP  +A+    +
Sbjct: 345 VFIPLTDKEDPDDIFREGGGEALEQLLERKLQPIPFACRSIAPKGERLTPQGKAKAAREV 404

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK----NARHRDQKGPSQ 464
              I     +  +  + +     L+   Q  +++   +           +  + Q+ P+ 
Sbjct: 405 FAIIQKSDSEAAKVEFVRQAAAALELDEQATLSDFRRFAGGQSNYSAGPSPSQSQQTPAP 464

Query: 465 RLMQSSLVKGKLSKKPSLR----EAALLLTLINHPAILQEQYQELADIRYDNNEL--QKL 518
              Q +         P       E  LL   +    +  +   ++ D  + +  L   +L
Sbjct: 465 SPSQKTQNANSGEPSPRRAVYSVERDLLALCMLDGDLGNQVA-QIVDHEWIDTTLPEGEL 523

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
            +F+ ++F+   +  PE +++ L       L   +                   +  +  
Sbjct: 524 LNFVLNEFLHDMWNGPESLNEHLESAELRTLASDIYFDA-----------KEPENPERLC 572

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            +AL      + + R+ +E++ +I +  A  +A+    L+  L  +  
Sbjct: 573 NEALKRLL-AKFVERKTKELKLEIGRKQATNDADAL-SLLGELSALSQ 618


>gi|332884794|gb|EGK05050.1| hypothetical protein HMPREF9456_03203 [Dysgonomonas mossii DSM
           22836]
          Length = 666

 Score =  321 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 168/680 (24%), Positives = 292/680 (42%), Gaps = 62/680 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  ++    + +++ Q+V   RR  N     Y   CPFH+++TPSF+ + SK   
Sbjct: 2   IDQATIDRIIDAAQVVDVVSQFVTLKRRGIN-----YVGLCPFHEDRTPSFYVSPSKNIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CF+C   G  + F+      S+ ++++ LA    + +   +   E+K+    +  L  L
Sbjct: 57  KCFACGEGGTAVHFIMKHEQLSYFDALRYLAKKYNIEIQERELTDEQKQAYNERESLFIL 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A + F  +L    + +     Y  ERG     I+ F+LGY+ + R SL +   + G+
Sbjct: 117 NDFARNHFVKTLHEHIEGKSVGLSYFKERGFREDIIQKFQLGYSLEQRDSLTQEAIKNGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237
            EE +++ GL I  ++S    DRFR R+IFP+ +  G+V+AFGGR L K   + KY+NSP
Sbjct: 177 KEEYLVKTGLTIKSESSGALIDRFRGRVIFPVHTLSGKVVAFGGRILKKAENTGKYVNSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HKG  LY  + A   + K          +    LVEGY DV+S+ QAG++NVV+S
Sbjct: 237 ESEIYHKGSELYGIYFAKQAITK----------ADCCYLVEGYTDVISMHQAGIENVVAS 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ + +  + + +DGD  G++AA + IDL    L  G ++  VLL  GE
Sbjct: 287 SGTALTHGQIRLIHRFTEYVTILYDGDAAGIKAALRGIDL---LLEEGMKIKVVLLPDGE 343

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R     +  K + E          +   + + N P +RA L   + + I  I D
Sbjct: 344 DPDSFARKQNAESLTKYVQEHEVDFIRFKTQLLLDDAGNDPIKRANLISDIVSSIAVIPD 403

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYG----RYWKKNARHRDQKGPSQRLMQSSLVK 473
             +R  Y +     L    +  I E +           +     +    +  L Q    +
Sbjct: 404 NIIRSVYIKDCSILLNIDERILIQEVNKKRLAHLEKAPQPKIDPELSAINVDLSQPEAHR 463

Query: 474 GKL---SKKPSLREAALLLTLINHP-AILQEQYQ--------------------ELADIR 509
           GK           E A+L  ++ +   IL E  +                    +     
Sbjct: 464 GKPIVKKTNIDKFELAILYFIVRYGMEILIEGGENNPATGDMPTTVIDWVKFDLQRDGFW 523

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
           + N   + +          + +                   + +  + + + L       
Sbjct: 524 FTNPLYKTILEDAIEHSANEYFNPSRYFLAHTDAHISKIAAELVSDRYQLSKLHMKQFGE 583

Query: 570 NIVDVRQGYQQALALYK---------RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
           N+        +   L+K         +   +S+Q +EI++ + +   + + +   IL+  
Sbjct: 584 NLKKEDTPLAEEKHLWKNVPRAVTELKDAHISKQMKEIKEDLIKKQKEKDWDGAIILMQK 643

Query: 621 LHEVH--IQIHQIESQEAMI 638
           L E+    +I   E  E +I
Sbjct: 644 LKEMDEIKKILAKELGERII 663


>gi|291543226|emb|CBL16335.1| DNA primase, catalytic core [Ruminococcus sp. 18P13]
          Length = 581

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 155/586 (26%), Positives = 260/586 (44%), Gaps = 26/586 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P +FI  L +  PI   +G+YV   R  +N     Y   CPFH EKTPS        
Sbjct: 1   MPLPDEFIYQLKLANPIDTTMGRYVHLIRSGSN-----YKCLCPFHSEKTPSCTVYTGTQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            +YCF C   GD ++F   +      E+++ LA   G+ +P  D   +   K++  ++ +
Sbjct: 56  SFYCFGCGAGGDVITFTKQIENLDTYEAIKLLAERGGLEMPEND-LNKDGAKLKLRILEM 114

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A +FF+ +L   +DKR   Y  +RG+   AI+ + +GYAP +   L +HL   GF+ 
Sbjct: 115 NREAANFFYRNLLQGQDKRGLQYAVQRGLTPKAIKKYAIGYAPAAWDGLMKHLEGLGFTR 174

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+++ AGL+         +D FR R++FPI   RG VIAFGGR + +GE  KYLNS +T 
Sbjct: 175 EEMLSAGLIRQNARGC--FDFFRERVMFPIIDLRGNVIAFGGRLI-EGEGPKYLNSGDTP 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K +NL++   A N   K             +IL EGYMDV+++ QAG + VV++LGT
Sbjct: 232 VFKKSRNLFSLNFAKNANVK------------QLILAEGYMDVIAINQAGFEQVVATLGT 279

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q R++ + +  +VLC+D D  G  A ++AI+L       G     + +   +DPD
Sbjct: 280 ALTAEQARIMAQYATEVVLCYDSDSAGQNATHRAINL---LSEAGLHTRILKVQDAKDPD 336

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +IR +G T F+ L+  S   ++    R  E     T   + +        +  I+++  
Sbjct: 337 EYIRKFGATRFKLLLDNSGGAINFELARCREGLDLATEQGKIDFLRRTVQVLAGIRNEME 396

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
           R  Y   I    +       ++     R   + +  +  +              +    +
Sbjct: 397 REVYLSRIAKEEEISLDILHSQVKAQLRKSYYTEKKQSWNAMMAKSSFRDELNPEAPQYQ 456

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           + +  E  +L  L  HP +L E  + L    +  +  +K++        E   F      
Sbjct: 457 REAKAEEQILAYLFLHPDLLPEVEKRLKPEHFFTSLHRKIYEVFCERMPETDTFSVSMFR 516

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
               +   G +   +      A       +   + ++    + +  
Sbjct: 517 DACSDAEMGRITGIMAHNAEVALTADTLNDCIRLLLQAKEHEKINA 562


>gi|288924667|ref|ZP_06418604.1| DNA primase [Prevotella buccae D17]
 gi|288338454|gb|EFC76803.1| DNA primase [Prevotella buccae D17]
          Length = 580

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 144/589 (24%), Positives = 254/589 (43%), Gaps = 60/589 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  I  ++    I +++ +YV   +R  N     Y   CPFH++  PSF  + S+G  
Sbjct: 2   IDRATIDRIMDATNIVDVVSEYVSLRKRGVN-----YVGLCPFHNDSHPSFSVSPSRGIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIRL 120
           +CF+C   G+ ++FL  L   ++ ++++ LA    + +   +     +K+E  +  +  +
Sbjct: 57  HCFTCGKGGNAVNFLMELEQMTYPDALRWLARKYNIEVRERELSDEEKKRENERESMFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +F   L    D       Y   RG     I  F+LG+AP+ R +L +   + G+
Sbjct: 117 NEWAAKYFQQILHEDVDGMAIGMQYFRSRGFRDDIIRKFQLGFAPNQRNALSQAAVKHGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
             E +I+ GL    D      DRF  R IFP     G+V+AFGGR L    KG S KY+N
Sbjct: 177 QAEFLIKTGLCYQRDGG-GLVDRFAGRAIFPWIGVSGKVVAFGGRVLDSRTKGVSQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SP++ ++HK + LY  + A   + K             + +VEGY DV+S+ Q G++NVV
Sbjct: 236 SPDSEVYHKERELYGIYQAKKAIAK----------EDCVYMVEGYTDVISMHQCGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+ YQ+R+L + +  IVL +DGD  G+ AA +  D++L     G  +  +LL  
Sbjct: 286 ANSGTALSNYQIRMLHRFTNNIVLLYDGDAAGIHAAMRGTDMLLSE---GMNIKVLLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G DPDSF R +    F+  I E      + +K     +    P +R+E    +   I+ I
Sbjct: 343 GNDPDSFARNHTAADFKSYIEEHQTDF-IQFKTNLLLKGVTDPIKRSEAINSIVESISLI 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ------- 468
            DQ +R  Y      RL       I++ + + R  K   +  + +    +          
Sbjct: 402 TDQIVRAAYIHDCAQRLGINEATLISQMNRFIRNGKDERQKAEMRSAGLQQAPGEPSVPG 461

Query: 469 ----SSLVKGKLSKKPSLREAALLLTLINHPA--------------------ILQEQYQE 504
                  ++   + +    E  ++  +  H                      + Q  Y +
Sbjct: 462 AVESRPAIEAAKTTQEKEVERMIIQMVFRHGDELISVDANGGEGETETVTLPVAQYIYYD 521

Query: 505 LAD--IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           L    +++ N+   ++ +       ++ +       +          ++
Sbjct: 522 LEADGLKFRNDTYNRVLTECVDHLDDETFKAENYFLRHHDPEISKLAVE 570


>gi|300173323|ref|YP_003772489.1| DNA primase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887702|emb|CBL91670.1| DNA primase [Leuconostoc gasicomitatum LMG 18811]
          Length = 615

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 135/643 (20%), Positives = 254/643 (39%), Gaps = 44/643 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI ++   + I ++IGQY D  +R        +   CPFHD+  PS    ++K  
Sbjct: 4   RIPESFITEVRQKVNIVDVIGQYTDLVKRGRQ-----WNGSCPFHDDHHPSLFVEENKQV 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIR 119
           + CFSC   G   SFL    G S+ E++  LA  A + +         ++ +     + +
Sbjct: 59  FNCFSCGRSGSVFSFLMEKEGMSYPEAILSLAESADMQVDSSISAGVTQQVDSTTQVVYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           L   A   + H L N         Y  D+R +    I+ F +G+ P+   +L  +  ++ 
Sbjct: 119 LHTAAQRLYQHILLNTTSGEQALAYLHDKRQLTDDIIKHFGIGFVPED-NALLNYATEQN 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S E +  + L I  D      DRF  R+++PI++ RGQV+ F GR L+   S+KY+NSP
Sbjct: 178 ISREMMRTSELFISNDQG-ELRDRFSGRIVWPIKTERGQVVGFSGRALNANNSIKYMNSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+  F KGK LYNF  + N ++           ++ +++ EG+MDV+S   A     V++
Sbjct: 237 ESPFFTKGKILYNFDLSKNQIR----------QTNTVMIFEGFMDVISASMAEKPVGVAT 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALT   +R L  ++ RI+L +DGD+ G  AA ++IDL+         +  V L    
Sbjct: 287 MGTALTRDHVRQLSHVAKRILLVYDGDEAGQNAARRSIDLI-REYAKNVDIGVVYLPDHL 345

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD      G +  ++ + +++                 +   +    +           
Sbjct: 346 DPDEVRVQRGLSVLKQTLEQNIQTPVEFLVNAARVGKNLSNQVQYLAFLQEVMKTLKSAS 405

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG--- 474
              +      I +          T+           ++          L  +    G   
Sbjct: 406 PVEQDIQLTRIANEFGTSKHALQTQLQQSVTQKASKSQQTYSTMVEPPLYSNDYDGGLGQ 465

Query: 475 ----KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
               +   +    E AL++ +I    ++ +  +  A   + + + Q L   L + +  Q 
Sbjct: 466 KDINQSITQVEQAERALIMAMIKSSQVMVQVKET-AGFAFVHPDYQ-LLMMLTNIYQTQH 523

Query: 531 Y--FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
              F   +    + +    + +  +DR   D  +            +      L +    
Sbjct: 524 PGDFDLAQYMDFIQKPELNQKIMAIDRSYGDIAIE-----------KAAINDYLRVIMHD 572

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             +  +  E+++ I     + +  K    ++ L  +  +  ++
Sbjct: 573 APIDARIRELQQAINTAKQQHDDAKLLQFMTELINIKKKQSEL 615


>gi|94988284|ref|YP_596385.1| DNA primase [Streptococcus pyogenes MGAS9429]
 gi|94541792|gb|ABF31841.1| DNA primase [Streptococcus pyogenes MGAS9429]
          Length = 604

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 156/637 (24%), Positives = 273/637 (42%), Gaps = 52/637 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   GD   F+       F+ESVQ +A   G+ L   P       + +     L+
Sbjct: 66  FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 125

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A  F+H  L      +    YL +RG+D   IE F +G APD    L + L +K 
Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL----SKGESVKY 233
           + E +++ +GL    D S T YD FRNR++FP+   RG +IAF GR       +    KY
Sbjct: 185 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADMEKRQAKY 244

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            NS  T+LF+K   LY+   A   + K          +  + L+EG+MDV++  ++G +N
Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+S+GTALT+  +  L +++ ++VL +DGDD G  A  K+++L+   ++       V +
Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPD F++ +   AF  L+ +S       +    +  + +    +      +   I 
Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  ++ Y   I D L       + +     R   +  R          L+  +L  
Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPI 467

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K     +  E+ L+  L++H  +L E      D  +D + L+ L+  L           
Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLEILYQRLKQQG------- 519

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592
                  +      E+ ++++R   +    +   E  + ++         L KR +LL  
Sbjct: 520 ------YITSYDLSEMSEEINRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           R   +  K++ + + KG+ +    ++        ++ 
Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604


>gi|254456804|ref|ZP_05070232.1| DNA primase [Campylobacterales bacterium GD 1]
 gi|207085596|gb|EDZ62880.1| DNA primase [Campylobacterales bacterium GD 1]
          Length = 552

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 150/594 (25%), Positives = 250/594 (42%), Gaps = 51/594 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I+ L   + I +++G YV+  +   N     Y A CPFHDEK+PSF  + SKG Y
Sbjct: 2   ITQDSIEALKARLDIVDVVGSYVELKKAGAN-----YKAPCPFHDEKSPSFVVSPSKGIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F       ++ E++++LA      L   D K  K          +++
Sbjct: 57  HCFGCGAGGDSIKFTMEYEKLNYPEALEKLANNYNFTLSYTDNKHNKPRSQ------VMD 110

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
             ++++ + L +        Y+ ERGI   ++E F +GYAPDS  +   +++ + FS  +
Sbjct: 111 KLSEWYQNLLTSK--PEALSYIKERGIYESSVEKFGIGYAPDS-NATINYIKSQLFSVNE 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
            +   + + G +S  ++ RF  R+ FPI S+ G ++ FGGRT+  G   KY+NSPET  F
Sbjct: 168 AV--DMGVIGYDSGRNFARFIERITFPIHSANGSIVGFGGRTI-TGHQAKYVNSPETAFF 224

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           +K + LY +  A   L K          +  II+ EGY+DV+ L QAG  N V++LGTAL
Sbjct: 225 NKSRLLYAYHHAKQTLHK----------TKEIIITEGYLDVIMLHQAGFTNAVATLGTAL 274

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T+  L LL K  PRIV+ +DGD  G  AA KA  L       G     V+   G DP   
Sbjct: 275 TQEHLPLLRKGEPRIVMAYDGDKAGRAAALKASRL---LSAGGFNGGVVIFGDGLDPADM 331

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +          +   + P ++ + +          P  + E        +  +    L+ 
Sbjct: 332 VHKGAVEELATMFRSAKPFIEFVLEEILSLYDLRDPKAKEECMQDGIGYLKTL-SPILQE 390

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   +  RL  L                           SQ     +    + +    +
Sbjct: 391 EYKTFLASRLGGL------------------GISPSLVRFSQAPTNKNTPLIQKNTHKDM 432

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E +L+ T++ HP ++ +    L           + ++      +++   +   I +++ 
Sbjct: 433 WELSLIKTVLEHPELVDQMLDVLDPSLLQF--HSREFALSLQGRLDEPSLMAISIDEQIQ 490

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                E LK                + N        Q+A  + K    +S+ K 
Sbjct: 491 PLRDEEALKAELIAFLTKHYERELRKINTQASLSFEQKAFYIRKFRGKISKLKR 544


>gi|241765987|ref|ZP_04763910.1| DNA primase [Acidovorax delafieldii 2AN]
 gi|241364036|gb|EER59280.1| DNA primase [Acidovorax delafieldii 2AN]
          Length = 443

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 146/462 (31%), Positives = 230/462 (49%), Gaps = 26/462 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P+ FI++LL  + + +++G+YV   +   N     +   CPFH EK+PSF  + +K 
Sbjct: 1   MSIPQSFIQELLSRVDVVDIVGRYVPLKKGGAN-----FMGLCPFHGEKSPSFSVSPAKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------KIQ 114
           FY+CF C   G+ +SFL    G  F+E+VQ LA   G+ +P  D   ++KE      + Q
Sbjct: 56  FYHCFGCGKNGNAISFLMEHAGMGFVEAVQDLAQQVGLQVPDDDISPQEKERAAAARQKQ 115

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  ++E A   +   L+ +   R   Y   RG+     + + LGYAP+   SL     
Sbjct: 116 ATLTDVLEKAAHAYRQHLRAS--TRAVAYFKGRGVSGAVAKRYGLGYAPEGWRSLASVFA 173

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
                        +++  ++    YDRFR+R++FPIR+ +G+ I FGGR L   +  KYL
Sbjct: 174 HYD-DPLLEESGLVIVSEEDGGKRYDRFRDRVMFPIRNVKGECIGFGGRVL-GDDKPKYL 231

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKG+ LY  F A   ++             + ++ EGYMDV++L Q G  N 
Sbjct: 232 NSPETPVFHKGRELYGLFEARTAIR----------EQGYALVTEGYMDVVALAQLGFPNA 281

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V++LGTA T   ++ L + +  +V  FDGD  G RAA KA+D  L H      + F+ L 
Sbjct: 282 VATLGTACTPEHVQKLLRFTDAVVFSFDGDAAGRRAARKALDGALPHASDTRSIKFLFLP 341

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPDSF+R  G  AF + I +++PL   L +  +E     T + RA +  + +   + 
Sbjct: 342 PEHDPDSFVRAQGTDAFARCIGDAVPLSRFLVEAASEGCDLGTAEGRAHMASNARPLWSA 401

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
           + +  LR      +   L QL    + +  G     +   + 
Sbjct: 402 LPEGVLRRQVLSDLAQ-LAQLDAHDLADLWGKSAAQEAARQP 442


>gi|15674826|ref|NP_269000.1| DNA primase [Streptococcus pyogenes M1 GAS]
 gi|13621958|gb|AAK33721.1| putative DNA primase [Streptococcus pyogenes M1 GAS]
          Length = 604

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 155/637 (24%), Positives = 272/637 (42%), Gaps = 52/637 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   GD   F+       F+ESVQ +A   G+ L   P       + +     L+
Sbjct: 66  FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 125

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A  F+H  L      +    YL +RG+D   IE F +G APD    L + L +K 
Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL----SKGESVKY 233
           + E +++ +GL    D S T YD FRNR++FP+   RG +IAF GR       +    KY
Sbjct: 185 YEEGQLVASGLFHLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADMEKRQAKY 244

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            NS  T+LF+K   LY+   A   + K          +  + L+EG+MDV++  ++G +N
Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+S+GTALT+  +  L +++ ++VL +DGDD G  A  K+++L+   ++       V +
Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPD F++ +   AF  L+ +S       +    +  + +    +      +   I 
Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  ++ Y   I D L       + +     R   +             L+  +L  
Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKHQGQIAQAVSNLV--TLPM 467

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K     +  E+ L+  L++H  +L E      D  +D + L+ L+  L           
Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 519

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592
                  +      E+ ++++R   +    +   E  + ++         L KR +LL  
Sbjct: 520 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           R   +  K++ + + KG+ +    ++        ++ 
Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604


>gi|332653407|ref|ZP_08419152.1| DNA primase [Ruminococcaceae bacterium D16]
 gi|332518553|gb|EGJ48156.1| DNA primase [Ruminococcaceae bacterium D16]
          Length = 586

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 149/614 (24%), Positives = 270/614 (43%), Gaps = 48/614 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ +L+    + +L+G+ V   ++        YW CCPFH EKTPSFH    + 
Sbjct: 1   MAWPPQFLDELIDRTDLVDLVGESVRLTKKGN-----SYWGCCPFHSEKTPSFHVVPDRK 55

Query: 61  FY----------YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK 110
            Y                     ++F+  L   SF E+V+ LA   G+ +P         
Sbjct: 56  IYKCFGCGKGGG----------AINFVMELDNLSFREAVEVLAKRCGMQVP-DSGASPGA 104

Query: 111 EKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLR 170
           ++ +  L+ + + A   FH  L      +   YL +RG+    +  F LG+AP+   +L 
Sbjct: 105 KERREKLLTINKQAARAFHRWLYAPEGAQGLAYLQKRGLSKGTLTRFGLGFAPNRWDALI 164

Query: 171 EHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
           + L ++G+ +  +++AGL +   +    YDRFRNR++FPI  + G VI FGGR +    +
Sbjct: 165 QELSKEGYDKRDLLDAGLAVSNKDG-RIYDRFRNRVMFPIIDTGGNVIGFGGRVM-DDST 222

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSP+T +++K +N++    A                +  +IL EGYMD +SL QAG
Sbjct: 223 PKYLNSPDTPVYNKSRNVFALNIAKKS------------KAGQVILTEGYMDTISLHQAG 270

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
             + V+SLGTALT    +LL +  P+ +L +DGD  G+ AA +AI L       G +V  
Sbjct: 271 FDSAVASLGTALTPDHAQLLSRYFPQAILAYDGDGAGVAAAQRAIPL---LEKAGLKVRV 327

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           + +   +DPD FI+ YG+ AF++L+ +S   VD    +  +  +     ++         
Sbjct: 328 LRMRGAKDPDEFIKAYGRDAFQRLLDQSENQVDYRLDQIKKKYNLEDDTQKVAFLQEAAQ 387

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK---GPSQRLM 467
            ++ +     R  Y            +    E     +   +  + + ++    P+    
Sbjct: 388 MLSTLPSAVEREIYGGHAAQTAGVSPETMALEVKKAFQQRLRKEKKKQERRDLAPAVNQQ 447

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             +      + + +L E  ++  L+  P +  E    L    + +  L +++  L     
Sbjct: 448 PQTRELRYENIRSALAEEGVIRLLLLDPGLAGEMGG-LTGKEFSSPLLGRVFDLLMDRAG 506

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           +        +   L       + +   +    A    + ++   V   +G +++    + 
Sbjct: 507 QHLNLSLPALAGDLTAPEMDHMARVAQKPESVANSRRSLSDYIAVIRGEGLKRSGQSEEA 566

Query: 588 FRLLSRQKEEIEKQ 601
             LL+ QK+ +EK+
Sbjct: 567 L-LLAAQKKNLEKK 579


>gi|71903244|ref|YP_280047.1| DNA primase [Streptococcus pyogenes MGAS6180]
 gi|71802339|gb|AAX71692.1| DNA primase [Streptococcus pyogenes MGAS6180]
          Length = 604

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 156/637 (24%), Positives = 273/637 (42%), Gaps = 52/637 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   GD   F+       F+ESVQ +A   G+ L   P       + +     L+
Sbjct: 66  FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 125

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A  F+H  L      +    YL +RG+D   IE F +G APD    L + L +K 
Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL----SKGESVKY 233
           + E +++ +GL    D S T YD FRNR++FP+   RG +IAF GR       +    KY
Sbjct: 185 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADMEKRQAKY 244

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            NS  T+LF+K   LY+   A   + K          +  + L+EG+MDV++  ++G +N
Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+S+GTALT+  +  L +++ ++VL +DGDD G  A  K+++L+   ++       V +
Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPD F++ +   AF  L+ +S       +    +  + +    +      +   I 
Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  ++ Y   I D L       + +     R   +  R          L+  +L  
Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPI 467

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K     +  E+ L+  L++H  +L E      D  +D + L+ L+  L           
Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLEILYQRLKQQG------- 519

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592
                  +      E+ ++++R   +    +   E  + ++         L KR +LL  
Sbjct: 520 ------YITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           R   +  K++ + + KG+ +    ++        ++ 
Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604


>gi|94992160|ref|YP_600259.1| DNA primase [Streptococcus pyogenes MGAS2096]
 gi|94545668|gb|ABF35715.1| DNA primase [Streptococcus pyogenes MGAS2096]
          Length = 604

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 156/637 (24%), Positives = 273/637 (42%), Gaps = 52/637 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   GD   F+       F+ESVQ +A   G+ L   P       + +     L+
Sbjct: 66  FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 125

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A  F+H  L      +    YL +RG+D   IE F +G APD    L + L +K 
Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL----SKGESVKY 233
           + E +++ +GL    D S T YD FRNR++FP+   RG +IAF GR       +    KY
Sbjct: 185 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADMEKRQAKY 244

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            NS  T+LF+K   LY+   A   + K          +  + L+EG+MDV++  ++G +N
Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+S+GTALT+  +  L +++ ++VL +DGDD G  A  K+++L+   ++       V +
Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPD F++ +   AF  L+ +S       +    +  + +    +      +   I 
Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  ++ Y   I D L       + +     R   +  R          L+  +L  
Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPI 467

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K     +  E+ L+  L++H  +L E      D  +D + L+ L+  L           
Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLEILYQRLKQQG------- 519

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592
                  +      E+ ++++R   +    +   E  + ++         L KR +LL  
Sbjct: 520 ------YITSYDLSEMSEEINRAYYNVLEENFPKEVALGEIDD------ILSKRAKLLAE 567

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           R   +  K++ + + KG+ +    ++        ++ 
Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604


>gi|302871328|ref|YP_003839964.1| DNA primase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574187|gb|ADL41978.1| DNA primase [Caldicellulosiruptor obsidiansis OB47]
          Length = 587

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 140/625 (22%), Positives = 254/625 (40%), Gaps = 50/625 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
              ++ +L  + I +++  YV   +   N     + A CPFH E+TPSF+ + SK  ++C
Sbjct: 3   ERVVEQVLNKVDIVDVVSMYVPLKKVGVN-----FRALCPFHQERTPSFYVSPSKQIFHC 57

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIRLI 121
           F C V G+ + F+  +   +F E+++ LA  A + +    P+  K     K + +LI L 
Sbjct: 58  FGCGVGGNAIHFVMRIENLTFTEALKVLAEKAKIDVDFSQPQSAKDRALAKQKEELISLH 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
               ++F   L    +     Y+ +RGI     + F LG+ P++        ++      
Sbjct: 118 HDCFEYFQRQLYLRENIDAARYILKRGIRKETAKQFGLGFCPENNNLYELLAKKYSKEII 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
                   I  + +  +Y RF  RLIFPI  +  +VI FGGR +    + KY+NSP+T++
Sbjct: 178 DKSG----IFIERNGKNYCRFEGRLIFPIFDTMNRVIGFGGRIIDDSRAPKYMNSPDTLI 233

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K K LY    A +                  ++VEGYMDV+SL Q G+ NVV  LGTA
Sbjct: 234 FSKSKVLYGLNIAKSS------------KEKDFVVVEGYMDVISLHQEGIDNVVGVLGTA 281

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT+    LL +    +VLC D D  G  A +++ D+       G  V  + L   +DPD 
Sbjct: 282 LTQDHSFLLRRYKNEVVLCLDSDQAGKNATFRSGDI---LYQNGLMVKVMELENAKDPDE 338

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKL 420
           +I+ +GK AF      ++ ++D   K+ + N   +  D++           +  I ++  
Sbjct: 339 YIKKFGKDAFLLKKQNAMFVIDFKIKQISSNYDLSKSDQKIRFVREYFEKILMPISNEVE 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y + +    Q      + E +       K           Q+    +  +       
Sbjct: 399 RQEYIKKLSQITQIDEDAILKEFTKNENIKLKRIESIQHFKQVQQKSNLTEEERIKKNDI 458

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                 LL   +      +     + +  +   +++ L+S + +   E        +   
Sbjct: 459 D-----LLSIYVEWANKSESIRNAVTEDDFCTEDIKILFSSIKNLINEGMEVTYSMLLTF 513

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    ++L +L                     ++  ++      R   L R+  E +K
Sbjct: 514 VDDE---KVLSELTSFSSKGF-------ETEEAAKRAIEELKTNNNRMLWLRREMLEAQK 563

Query: 601 QIAQVTAKGEAEKTAILISILHEVH 625
           +       G+ EK   L  ++ ++ 
Sbjct: 564 R-------GDNEKVLKLQMLIRKIK 581


>gi|332522341|ref|ZP_08398593.1| DNA primase [Streptococcus porcinus str. Jelinkova 176]
 gi|332313605|gb|EGJ26590.1| DNA primase [Streptococcus porcinus str. Jelinkova 176]
          Length = 608

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 163/634 (25%), Positives = 271/634 (42%), Gaps = 48/634 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 17  AIDKEKISQIKNAVNIVDVIGEVVSLSRSGR-----HYLGLCPFHKEKTPSFNVIEDRQF 71

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRL 120
           ++CF C   GD   F+       F+ESV  LA  +G+ L V  P+ +  K K   +LI L
Sbjct: 72  FHCFGCGRSGDVFKFIEEYRQVPFLESVSILAEKSGIVLDVPKPQSQSPKRKTHQELIDL 131

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  F+   LK     +    YL +RG+D + IE F +G AP     L + L +K +S
Sbjct: 132 HHDAQKFYQAVLKTTKIGQEARNYLYQRGLDDNLIEHFNIGLAPAEPDYLYQALSKK-YS 190

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES----VKYLN 235
           EE +  +GL    + S T YD FRNR++FP+   RGQ IAF GR  +K +      KY N
Sbjct: 191 EETLTSSGLFNLSETSNTVYDAFRNRIMFPLADDRGQTIAFSGRIWTKEDQDKKLAKYKN 250

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T+LF+K   LY+   A   + K             + L+EG+MDV++  +AG +N +
Sbjct: 251 SRATLLFNKSYELYHLDKAKPVIAKK----------HEVFLMEGFMDVIAAYKAGCENAI 300

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT+  +  L  L+ +++L +DGDD G  A  K+IDL+    +       VL+  
Sbjct: 301 ASMGTALTQEHINHLKPLTKKVILTYDGDDAGQNAIAKSIDLLSDFQVE-----IVLIPN 355

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F++ Y       L+  S       + R  +  + +    +      +   I   
Sbjct: 356 KMDPDEFVQKYSAEELANLLEHSRISDVEFFIRYLKPENTDNLQAQIAYVEEIARIIAQA 415

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                +  Y   + D L       + +     R   +  + R  +         +L   K
Sbjct: 416 PSITAQNSYINKVADSLPDFDYLQVEQTVNTYRVQDR--QRRQVQIAPSEAPVMTLPVTK 473

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E  LL  LI+H  +L E ++   D  +D   LQ+L+  +     E       
Sbjct: 474 NITALVRTENQLLHRLIHHEYLLNE-FRLKDDFYFDTPALQELF-LVLKANGEVSPIDLA 531

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + + + +  +  L + L  +V +  +     + +                R R + +Q 
Sbjct: 532 NLSEDVNQAYYRVLEEHLPEEVTENEIIDILAKRDK-------------LLRERDIHKQ- 577

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
               KQ+ + +  G+ +    ++  L     ++ 
Sbjct: 578 ---GKQVRESSNNGDHQLALEVLENLIAQKRKME 608


>gi|311105373|ref|YP_003978226.1| DNA primase 1 [Achromobacter xylosoxidans A8]
 gi|310760062|gb|ADP15511.1| DNA primase 1 [Achromobacter xylosoxidans A8]
          Length = 684

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 142/465 (30%), Positives = 232/465 (49%), Gaps = 27/465 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI+DLL  + + +++G+YV   +   N +       CPFH+EK+PSF  + +K FY
Sbjct: 2   IPESFIQDLLARVDVVDIVGRYVQLRKGGANLL-----GLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQT----D 116
           +CF C   G  ++FL    G SF ++V+ LAA AG+ +P     P+ +++   +      
Sbjct: 57  HCFGCGAHGSAITFLMEHTGASFPDAVRTLAASAGMTVPEENRSPRQQQESARRKAEESR 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             ++++ A   +   L+ +       YL +RG+       F LG++   R+ L +     
Sbjct: 117 HTQVLDAAQAHYLKQLRASPAA--IRYLKQRGLTGEIAAHFGLGWSGTDRHGLSQVF--P 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            + +  ++E+GL+I+ ++    YDRFR R++FPIR++RG +I FGGR + KGE  KYLNS
Sbjct: 173 NYEDPVLVESGLVIESEDGRR-YDRFRERVMFPIRNARGSLIGFGGRIIGKGEP-KYLNS 230

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET LF KG  LY  + A   ++              +I+VEGYMDV+ L Q G+ N V+
Sbjct: 231 PETPLFSKGHELYGLWEARLAIR----------QEGQVIVVEGYMDVVGLAQQGIANAVA 280

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   ++ L + S +++  FDGD  G RAA++A+   L  L     + F+ L   
Sbjct: 281 TLGTATTPDHVKKLLRASDKVIFSFDGDGAGRRAAWRALQACLPVLRDDIAIRFLFLPSE 340

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPDS++R  G  AF   + +++ L   L        + N  + RA      K  +  I 
Sbjct: 341 HDPDSYVRELGAEAFRACLGDAVALSRFLLDELASRHNMNEAEGRASCLHEAKPLLAAIP 400

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
           +  LR    + +   +Q   ++     +         A      G
Sbjct: 401 ECALRVQIEREMAKLVQLTPEEMAQVLAQQPAKPFAPAPKSGTAG 445


>gi|312134620|ref|YP_004001958.1| DNA primase [Caldicellulosiruptor owensensis OL]
 gi|311774671|gb|ADQ04158.1| DNA primase [Caldicellulosiruptor owensensis OL]
          Length = 587

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 135/625 (21%), Positives = 257/625 (41%), Gaps = 50/625 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
              ++ +L  I I +++  YV   +   N     + A CPFH E+TPSF+ + +K  ++C
Sbjct: 3   ERVVEQVLNKIDIVDVVSMYVPLKKVGAN-----FRALCPFHQERTPSFYVSPAKQIFHC 57

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIRLI 121
           F C V G+ + F+  +   +F E+++ LA  A + +     +  K     K + +LI L 
Sbjct: 58  FGCGVGGNVIHFIMRIENLTFTEALKVLAQRAKIDVDFSQSQSAKDRALAKQKEELISLH 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
               ++F   L    +     Y+ +RGI     + F LG+ P++        ++      
Sbjct: 118 HDCFEYFQRQLYLRENIDAARYILKRGIRKETAKQFGLGFCPENNNLYEMLSKKYSKEII 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
                   I  + +  +Y RF  RLIFPI  +  +VI FGGR +   ++ KY+NSP+T++
Sbjct: 178 DKSG----IFIERNGKNYCRFERRLIFPIFDTMNRVIGFGGRIIDDSQAPKYMNSPDTLI 233

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K K LY    A +               +  ++VEGYMDV+SL Q G+ NVV  LGTA
Sbjct: 234 FSKSKVLYGLNIAKSS------------KENDFVVVEGYMDVISLHQEGIDNVVGVLGTA 281

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT+    LL +    +VLC D D  G  A +++ D+       G  V  + L   +DPD 
Sbjct: 282 LTQDHSFLLRRYKNEVVLCLDSDQAGKNATFRSGDI---LYQNGLMVKVMELENAKDPDE 338

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKL 420
           +I+ +GK AF      ++ ++D   K+ + N   +  D++           +  I ++  
Sbjct: 339 YIKKFGKDAFLLKKQNAMFVIDFKIKQISSNYDLSKSDQKFRFVREYFEKVLMPISNEVE 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y + +    Q      + E +       K           Q+    +  +       
Sbjct: 399 RQEYIKKLSQLTQIDEDAILKEFTKNENIKLKRIESIQHFKQVQQKSNLTEEERIKKNDI 458

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                 LL   +      +     + +  +   +++ L+S + +   E        +   
Sbjct: 459 D-----LLSIYVEWANKSESIRNAVTEDDFCTEDIKILFSSIKNLINEGMELTYSMLLTF 513

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    ++L +L              +  I +++                + +   +++
Sbjct: 514 VDDE---KVLSELTSFSSKGFETEEAAKRAIEELKTN--------------NSRMLWLKR 556

Query: 601 QIAQVTAKGEAEKTAILISILHEVH 625
           ++ +   +G+ EK   L  ++ ++ 
Sbjct: 557 EMLEAQKRGDNEKVLKLQMLIRKIK 581


>gi|218441997|ref|YP_002380326.1| DNA primase [Cyanothece sp. PCC 7424]
 gi|218174725|gb|ACK73458.1| DNA primase [Cyanothece sp. PCC 7424]
          Length = 634

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 158/642 (24%), Positives = 281/642 (43%), Gaps = 38/642 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                ++++   + I ++I +YV   +R            CPFH+EK+PSF+ +  K  Y
Sbjct: 6   LDPQTLEEIKQRVDIYDVISEYVVLHKRGK-----SLVGLCPFHNEKSPSFNVSADKQLY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDLI 118
           +CF C   G+ ++FL  L   SF E    LA    +PL  ++P+  +K +     +  L 
Sbjct: 61  HCFGCGAGGNAITFLMELRKQSFYEVALDLARRYQIPLKTLNPEEHQKLQRQLSLKEQLY 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREH-LRQK 176
            ++ VA  F+ H+L+    +    YL  +R ++   I  F+LGYAP    +L  + + QK
Sbjct: 121 EIVAVAVSFYQHALRQPEGEHALNYLKQKRHLNDEIITQFQLGYAPAGWETLYRYLVEQK 180

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +    + +AGL+    +++  YD FR+R++ PI  S+G+ IAFG RTL   E  KYLNS
Sbjct: 181 RYPVALVEQAGLIKPRKSASGHYDTFRDRIMIPIHDSQGRAIAFGSRTLGTDEP-KYLNS 239

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET LF KGK L+    A   +               +I+VEGY D ++L   G+ N V+
Sbjct: 240 PETPLFDKGKTLFALDKATKRI----------TEEDRVIVVEGYFDAIALHSVGITNGVA 289

Query: 297 SLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVLL 353
           SLGTA +  QL+ L + +   +I+  FD D  G++A  +AI+ +   +  G  ++  + L
Sbjct: 290 SLGTAFSGVQLKQLLRYTDSKQIIFNFDSDPAGIKATERAINEISSLVYSGQIQLRILNL 349

Query: 354 SRGEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
             G+D D F+         F  LI  +    +   ++     +    D    +   +   
Sbjct: 350 PDGKDADEFLNSSAGAAEKFRHLIETAPLWFEWQIEQLLSKHNLKEADHFQIVVQTMVKL 409

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           ++ +++   R YY     D L Q  +  I  +        K +  R  K  S++  QS+ 
Sbjct: 410 LSQLENIPQRIYYIHYCADLLSQGDKGRIRIYEDSLSKQLKKSNFRIVK-DSKKTTQSND 468

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQKLWSFLF---SDF 526
           V  +   +    EA LL   ++ P    E   ++   +I +  +  + LW  +     DF
Sbjct: 469 VISEEKNRLEYEEALLLKIYLHCPHHRAEIQAQIEEKEIVFSVSYHRFLWQQILTLEDDF 528

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           +                +       +   +VR         E +I       ++     +
Sbjct: 529 LSNPEPDNLSNRLLSLLQDKLLSFPEQAEKVRYLFYLDEIGEKDIAFASTNLEKVFLSLE 588

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEA----EKTAILISILHEV 624
             +  + ++  IE Q+ + TA  +     ++ + +   L E+
Sbjct: 589 FVKYTNYKRYCIE-QLDKATAFKDQLFWSQELSEVSQKLQEL 629


>gi|320095901|ref|ZP_08027525.1| DNA primase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977167|gb|EFW08886.1| DNA primase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 480

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 124/495 (25%), Positives = 202/495 (40%), Gaps = 42/495 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I+ +     I +++G +V           G     CPFHDE+TPSF+   + G +
Sbjct: 5   IRKDDIEAVRNAARIEDVVGDHVTLKPAG----IGSLKGLCPFHDERTPSFNVRPAVGMF 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119
           +CF C   GD +SF+  +    F E+V+ LAA  G+ L   +     + +    +  L+ 
Sbjct: 61  HCFGCGESGDVISFVQKIDHLPFAEAVEALAAKTGITLHYEEGGARVRTEEPGRRGRLVD 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              +A +F+   L   +  +   +L  RG        F +GYAP S  +L  HLR +G++
Sbjct: 121 AHRIAEEFYQSQLTTPQAAKGREFLAGRGFTQAMCAHFGVGYAPRSWDALIRHLRSRGYT 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPE 238
           +++I  AGL      +   YDRFR RL++PIR   G  + FG R L    +S KYLN+PE
Sbjct: 181 DQEIQTAGLASQ--GARGIYDRFRGRLVWPIRDITGATVGFGARRLDDDEDSPKYLNTPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K + LY    A   +               +++VEGY DV++   AGV   V++ 
Sbjct: 239 TPIYKKSQLLYGLDLAKKAI----------TQGHRVVIVEGYTDVMAAHVAGVDCAVATC 288

Query: 299 GTALTEYQLRLLWK-------------------LSPRIVLCFDGDDPGLRAAYKAIDLVL 339
           GTA     ++++ +                       +V  FDGD  G +AA +A     
Sbjct: 289 GTAFGPEHVKIIRRLLGDSADPAAGVVLASGRAHGSEVVFTFDGDSAGRKAALRAYGEDQ 348

Query: 340 CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399
                  +    +   G+DP       G  A   L+    PL +   +         + +
Sbjct: 349 NFAA---QTFVAVAPGGQDPCELRLSQGDQAVVDLVRSRTPLFEFAIRSVLSGVDLRSAE 405

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
            R          + HIKD+ LR  Y++ +   L    +          R     A  R  
Sbjct: 406 GRVAGLRSSARIVAHIKDRALRREYARQLAGWLGMDTRTVDQAVHAASRRGPDGAPARPG 465

Query: 460 KGPSQRLMQSSLVKG 474
                   +    +G
Sbjct: 466 APTMAGAGRPGPSQG 480


>gi|198284074|ref|YP_002220395.1| DNA primase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218668044|ref|YP_002426729.1| DNA primase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248595|gb|ACH84188.1| DNA primase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218520257|gb|ACK80843.1| DNA primase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 583

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 175/631 (27%), Positives = 272/631 (43%), Gaps = 58/631 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           N+   FI  LL H  +  LI   V   ++       D+WACCPFH EK+PSF  +  K  
Sbjct: 3   NFSPAFIDALLEHCDLVRLIDSRVPLKKKGR-----DFWACCPFHQEKSPSFSVSADKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF CH  G+ + FL A    SF E+V+ LA   GV LP   P  E++      L  ++
Sbjct: 58  YYCFGCHAHGNAIGFLMAHDRLSFPEAVKTLADEVGVALPEDGPAGEQESLR--PLRAIL 115

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E A   +  +L      +   YL  RG+    I  F+LGYAP +   L + L ++    +
Sbjct: 116 EKAIGVYRSALAEHPPAQE--YLRGRGLSEEIIGRFELGYAPSAAGFLSQKLGREPSLRQ 173

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           +++ AGL + G    + YDRFR R+IFPIR  RGQ +  GGR+L  G   KYLNSPE+ L
Sbjct: 174 QLLGAGL-VSGREDGSVYDRFRGRVIFPIRDGRGQAVGLGGRSL-DGHEPKYLNSPESAL 231

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           +HKG+ LY    A   ++++ R          ++LVEGY+DV++L QAG+   V++ GTA
Sbjct: 232 YHKGRVLYGLHQAREGMRRAGR----------VLLVEGYLDVITLHQAGIDYAVAASGTA 281

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           L + Q+ +L++ +  ++LCFDGD  G  AA++A+     HL  G  +  + L  G+DPDS
Sbjct: 282 LGDSQMEMLFRAAHEVLLCFDGDTAGRNAAWRAVQTAPEHLRAGRLLRLLFLPDGQDPDS 341

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +R  G   FE ++  + P +D   +      +    DE+A      ++ +  + D  LR
Sbjct: 342 LVREQGGAVFESMLPTARPAIDFFLEELQRRHNLAAEDEKALFLHAARDFLKRVSDPVLR 401

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y Q    R+Q L            R  +K            +                
Sbjct: 402 EVYEQ----RVQTLCGLAPVARRATSRAPRKATFSAAGGRSLFKTA-------------- 443

Query: 482 LREAALLLTLINHPA--ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                 L  L+N P     Q   ++L    +D + + ++ +          +    E+  
Sbjct: 444 ------LRLLLNFPEDPAWQALDRDLLPFLFDRDPMAEILAEALDILANMTHLSSHELFA 497

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           +L      E    L                 I        Q LA   R   +SR      
Sbjct: 498 KLSVLKHAEACYALVMSDSGDEEGQVLMRLEISGCVARVNQRLAA-ARSHFISR------ 550

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
                    G +  +    + +  +  +  +
Sbjct: 551 ----AADQGGLSALSEQERAEVVRLSRRDRR 577


>gi|294055047|ref|YP_003548705.1| DNA primase [Coraliomargarita akajimensis DSM 45221]
 gi|293614380|gb|ADE54535.1| DNA primase [Coraliomargarita akajimensis DSM 45221]
          Length = 609

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 140/641 (21%), Positives = 251/641 (39%), Gaps = 56/641 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              +  I  +   + + +++  YV   R         +    PF  EKTPSF+ +  +GF
Sbjct: 3   RISQRTIDTIKQQVNLVDVVSPYVQLKRAGR-----SFKGLSPFTQEKTPSFYVHPDRGF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE-KIQTDLIRL 120
           Y CFS    GD  +F+  +    F E+++ LA    + L        ++E  ++  +  L
Sbjct: 58  YKCFSTGEGGDCFTFVMKVENLEFGEAIEFLAKKFNIALEYEAGGPSREEVSLRKQIFEL 117

Query: 121 IEVATDFFHHS-LKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E+A  +FHH  LK      +  Y  E RG      E  K+GYAP +  +L +  +++  
Sbjct: 118 HELAAAWFHHEFLKGNEAAPVRRYWTEQRGFSIETAEAVKIGYAPAASNALAQLCQKRSI 177

Query: 179 SEEKIIEAGLLIDG---DNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG------E 229
           S   + ++GL        + A    RFR RL+ PIR  +G+V+AF  R L +        
Sbjct: 178 SIAAMHQSGLFFARENERDYARFRSRFRGRLMVPIRDVQGRVVAFTARQLEQTPDDDPAR 237

Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289
             KY+NSPET +FHKG+ L+    A  +L+               +LVEG +D +     
Sbjct: 238 EAKYVNSPETSIFHKGRILFGMDHARTHLK----------EGDSFLLVEGQLDAIRCWSV 287

Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLC-FDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           G+   V+  GTALTE Q+ L+ +  P  V C  DGD  G +AA + I +       G   
Sbjct: 288 GLHTAVAPQGTALTEDQVHLMRRYEPASVECLMDGDAAGRKAALRYIPIA---FKAGMEF 344

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
            F++L    DPD  +R  G    + +  ++   +++  +    +    +  E+     ++
Sbjct: 345 KFLVLPEKADPDDLLRSEGAAGLDPIRAQAQSAIELAVRAGLPDGRAPSTQEKTAALRNI 404

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              + H+  +  R  Y Q +   L    Q  + +     R  +          P      
Sbjct: 405 YELLQHVPSEVAREDYIQTVARILSVDSQAALKDFKQISRQRQGPQNTGPAPAP------ 458

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWSFLFSDFV 527
               +       +     LL  L++ P       Q L     + +  + +L + + +++ 
Sbjct: 459 ----ETSKDPLLTHATWELLWLLLHFPEYGLIISQALDYDWINTSSNEGQLLARIIAEYR 514

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E            L      +LL ++  +  +             +  +   QA      
Sbjct: 515 EGLIEDGTNFENLLETVEDRKLLAEIHTRNLEC------------EFPKVQIQACLNTLY 562

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
              L+ +K+E+E  I        +     L+  +  +  Q+
Sbjct: 563 KNYLTTRKKELEHLI--ANNDSSSPDQLRLMREVKSIRNQL 601


>gi|313890558|ref|ZP_07824186.1| DNA primase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121075|gb|EFR44186.1| DNA primase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 602

 Score =  319 bits (817), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 162/635 (25%), Positives = 274/635 (43%), Gaps = 50/635 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKEKISQIKNAVNIVDVIGEVVSLSRSGR-----HYLGLCPFHKEKTPSFNVIEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRL 120
           ++CF C   GD   F+       F+ESV  LA  +G+ L V  P+ +  K+K   +LI L
Sbjct: 66  FHCFGCGRSGDVFKFIEEYRQVPFLESVSILAEKSGIALDVPKPQNQSPKKKSHQELIDL 125

Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            + A  F+   LK     +    YL +RG+D + IE F +G AP     L + L +K + 
Sbjct: 126 HQDAQKFYQAVLKTTKIGQEARNYLYQRGLDDNLIEHFNIGLAPAEPNYLYQALSKK-YP 184

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES----VKYLN 235
           EE +  +GL    ++S T YD FRNR++FP+   RGQ IAF GR  +K +      KY N
Sbjct: 185 EEILTTSGLFNLSESSNTLYDAFRNRIMFPLTDDRGQTIAFSGRIWTKEDQGNKLAKYKN 244

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  T+LF+K    Y+   A   + K             + L+EG+MDV++  +AG +N +
Sbjct: 245 SRATLLFNKSYEFYHLDKAKPVIAKK----------HEVFLMEGFMDVIAAYKAGCENAI 294

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GTALT+  +  L  L+ +++L +DGDD G  A  K+IDL+    +       VL+  
Sbjct: 295 ASMGTALTQEHINHLKPLTKKVILTYDGDDAGQNAIAKSIDLLSDFQVE-----IVLIPN 349

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD F++ +       L+  S       + R  +  + +    +      +   I   
Sbjct: 350 KMDPDEFVQKHSAEELAHLLEHSRISDVEFFIRYLKPENTDNLQAQIAYVEEIARIIAKA 409

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                +  Y   + D L       + +     R   +  + R  +         +L   K
Sbjct: 410 PSITAQNSYIHKVADSLPDFDYLQVEQTVNTYRVQDR--QRRQVQITPSEAPIMTLPVTK 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E  LL  LI+H  +L E ++   +  +D   LQ+L+  +     E       
Sbjct: 468 NITALVRTENQLLHRLIHHEYLLNE-FRLKDNFYFDTPALQELF-LVLKANGEISPLDLA 525

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-SRQ 594
            + + + +  +  L + L  +V ++ +                     L KR +LL  R 
Sbjct: 526 NLSEDVNQAYYRVLEEHLPEEVTESEISDI------------------LRKRDKLLRERD 567

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             +  KQ+ + +  G+ +    ++  L     ++ 
Sbjct: 568 IHKQGKQVRESSNNGDHQLALEVLENLIAQKRKME 602


>gi|71910412|ref|YP_281962.1| DNA primase [Streptococcus pyogenes MGAS5005]
 gi|71853194|gb|AAZ51217.1| DNA primase [Streptococcus pyogenes MGAS5005]
          Length = 604

 Score =  319 bits (817), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 155/637 (24%), Positives = 272/637 (42%), Gaps = 52/637 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   GD   F+       F+ESVQ +A   G+ L   P       + +     L+
Sbjct: 66  FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 125

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A  F+H  L      +    YL +RG+D   IE F +G APD    L + L +K 
Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL----SKGESVKY 233
           + E +++ +GL    D S T YD FRNR++FP+   RG +IAF GR       +    KY
Sbjct: 185 YEEGQLVASGLFHLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADMEKRQAKY 244

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            NS  T+LF+K   LY+   A   + K          +  + L+EG+MDV++  ++G +N
Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+S+GTALT+  +  L +++ ++VL +DGDD G  A  K+++L+   ++       V +
Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPD F++ +   AF  L+ +S       +    +  + +    +      +   I 
Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  ++ Y   I D L       + +     R   +             L+  +L  
Sbjct: 410 QSPSITAQHSYINKISDLLPNFDYFQVEQSVNALRIQDRQKHQGQIAQAVSNLV--TLPM 467

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K     +  E+ L+  L++H  +L E      D  +D + L+ L+  L           
Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 519

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592
                  +      E+ ++++R   +    +   E  + ++         L KR +LL  
Sbjct: 520 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           R   +  K++ + + KG+ +    ++        ++ 
Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604


>gi|58584454|ref|YP_198027.1| DNA primase, DnaG [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58418770|gb|AAW70785.1| DNA primase, DnaG [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 586

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 173/636 (27%), Positives = 287/636 (45%), Gaps = 66/636 (10%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           D+I  +   + +S+++G+ V   +R        +   CPFH EKTPSF  +++KG Y+CF
Sbjct: 2   DYIDIIKSRLLLSDIVGKKVRLTKRG-----DSFVGFCPFHSEKTPSFLVSNTKGSYHCF 56

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
            C   GD  +F+S   G SF E+++RLA++ GV LP          K   +L   + +A 
Sbjct: 57  GCSAHGDVFNFISQTEGLSFKEALERLASVVGVELPKTLNLA----KENGELFSTLNLAA 112

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
            +F        ++ +  YL +R I    I+ FK+GYAP S   L+E+L   G  ++ +I+
Sbjct: 113 SWFVQK-----NQGIIAYLKQRKISPKIIDKFKVGYAPSS--GLKEYLNSLGIEDKILID 165

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
            GL+        S D F NRLIFPI +  G+VI FGGR LS  +  KYLNSPE+ LF K 
Sbjct: 166 VGLINK-----NSRDYFCNRLIFPIYNIAGKVIGFGGRALSSKQQPKYLNSPESQLFKKR 220

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
           +NLY    AL+ + K             + +VEGYMDV++L Q G+ N+V+ LGTA++  
Sbjct: 221 ENLYGLNFALSEIHKK----------QHVFVVEGYMDVIALHQTGISNIVAPLGTAISAE 270

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR- 364
           Q++ LWK +  I +C DGD  G  AA +  +LVL  L PG  + FV L   +DP      
Sbjct: 271 QIKSLWKFAKEISICMDGDSAGRNAAIRVAELVLPILEPGYTLKFVTLPTDKDPYDVCNE 330

Query: 365 -CYGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNTPDERAELEIHLKNCINHIKDQ 418
             + K      +  S  L              +N     P++ + LE      +N I + 
Sbjct: 331 LEHKKETVLSALDHSTKLHSEYLWHYIIGSNLQNYEKLAPEKYSILERKFMEYVNAIGNS 390

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            +R YY     D+         +E     +    N + R  K          L++ + + 
Sbjct: 391 SIRRYYRDYFYDK--------ASELRNSFKKQVFNNKTRATKSEYLYNKSPELIEAEQN- 441

Query: 479 KPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                +A +L   +  P IL     +++ +   + N ++++L   + +          E 
Sbjct: 442 -----QAIILRITLEFPEILNHPIYFEQFSHFEFTNVKIKRLQQHIINVANNGSELNKEV 496

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + Q L +      +K +  +          ++ N     +     + L     +L R++ 
Sbjct: 497 LLQELEQFNVDGTIKLIFEKTSILN-----SQLNNGKSAKTVWNNIVLRGELNVLQRER- 550

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            IE ++      G+      LI  + ++   I +++
Sbjct: 551 -IEARLG-----GDFGLEERLIEQIEQIESNIREMQ 580


>gi|255019636|ref|ZP_05291716.1| DNA primase [Acidithiobacillus caldus ATCC 51756]
 gi|254970939|gb|EET28421.1| DNA primase [Acidithiobacillus caldus ATCC 51756]
          Length = 586

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 178/643 (27%), Positives = 282/643 (43%), Gaps = 67/643 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            + + FI  +L    I  LI   V   ++       DYW+CCPFH EK+PSF  +  K  
Sbjct: 3   RFSQAFIDTVLARSDILRLIDSRVSLKKKGK-----DYWSCCPFHQEKSPSFSVSPEKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-PKIEKKEKIQTDLIRL 120
           YYCF CH  G+ + FL A    SF+E+V  LA  AG+PLP    P+      ++     +
Sbjct: 58  YYCFGCHAHGNAIGFLMAYERLSFVEAVSLLAEEAGIPLPQEGRPEGPDPRPVRA----I 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A   +  +L +    +   Y  +RG+       F LG+APD    L   L Q     
Sbjct: 114 LEAAEKLYREALHSHPPAQA--YWRQRGLSEATWNHFGLGFAPDQAQFLTSRLGQNSAQR 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E ++ AGL +   +    YDRFR R+IFP+R  RGQ+  F GR+ + G   KYLNSPETI
Sbjct: 172 ELLVAAGL-VSRRDDGRYYDRFRARVIFPLRDGRGQLCGFAGRS-TDGREPKYLNSPETI 229

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           L+HKG+ LY    A   +++  R            LVEGY+DV++L QAG+   V++ GT
Sbjct: 230 LYHKGQMLYGLDLAREGIRRRRRVV----------LVEGYLDVITLHQAGLDFAVAASGT 279

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT+ QL +LW+ +  IVLCFDGD  G  AA++A+ L    L PG  +  + L  GEDPD
Sbjct: 280 ALTDKQLEILWRTAGEIVLCFDGDAAGRAAAWRALQLAPARLRPGRLLRVLFLPEGEDPD 339

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S +R  G  AFE+++ ++ P +D       E       DE+A+     +  +  ++D  L
Sbjct: 340 SLVRKGGAAAFEEILAQARPALDHHLSVLRERYDLKKADEKAQFLGEARAFLAQVQDADL 399

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y Q + +          T    +     K    + ++     L Q++          
Sbjct: 400 RAVYGQRLEEIAGVAVVLPKTSAQAFPESAPKPVPVKAKRPGRPSLCQAA---------- 449

Query: 481 SLREAALLLTLINHPAILQEQYQELAD---IRYDNNE-LQKLWSFLFSDFVEQKYFLPEE 536
                  L  L+  P  +   +Q+L     +   + +   ++ +       E  +   + 
Sbjct: 450 -------LRLLLQRP--VDPHWQQLERRLLVYLRDEDTHAEVLADGLEILSESTHIGSQA 500

Query: 537 IHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +  RL  R     L ++            A +  +    +   +  +A       L+ Q 
Sbjct: 501 LFARLAARWDLDALFRE----------QFAPSVGSDEGSQSEVRDCVAR------LNLQL 544

Query: 596 EEIEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +   +         G A  +      L  +     + + +E+
Sbjct: 545 TQARIRFIGRTADRAGLAALSPEERQELLRITKG-RRSKGEES 586


>gi|298384873|ref|ZP_06994432.1| DNA primase [Bacteroides sp. 1_1_14]
 gi|298262017|gb|EFI04882.1| DNA primase [Bacteroides sp. 1_1_14]
          Length = 730

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 141/484 (29%), Positives = 232/484 (47%), Gaps = 26/484 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++ ++V   +R  N     Y   CPFH+EKTPSF  + +KG  
Sbjct: 2   IDQVTIDRILDAAQIVDVVSEFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPAKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
            CFSC   G+ + F+      S+ E+++ LA    + +   +   E+K+    +  +  +
Sbjct: 57  KCFSCGKGGNSVHFIMEHEQMSYYEALKYLAKKYNIEIKERELTNEEKQAQTTRESMFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y  +RG     IE F+LGY  +S  ++ +   +KG+
Sbjct: 117 NNFARDYFQNILKNHVDGRSIGLAYFRQRGFRDDIIEKFQLGYCTESHDAMSQEALRKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +++ G+  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 177 KKEFLVKTGICYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLSTATKGVKVKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + +  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVRQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+RL+ + +  I + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 286 ASSGTALTPGQIRLIHRFTNNITVLYDGDVAGIKASIRGIDM---LLEEGMNIKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +    F+  I E                +   P +RAEL  ++   I+ I
Sbjct: 343 GDDPDSFARKHNSEEFQAFIHEHEKDFIRFKTDLLMEDAGRDPIKRAELISNIVRSISVI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +  +R  Y +     L+   +  + E +       + A        S     +S     
Sbjct: 403 PEAIIRDVYIKECSQHLRIEEKLLVAEVAKLREAQAEKANRPSYNHSSSTTGDTSGTAAA 462

Query: 476 LSKK 479
               
Sbjct: 463 SGTP 466


>gi|253570313|ref|ZP_04847722.1| DNA primase [Bacteroides sp. 1_1_6]
 gi|251840694|gb|EES68776.1| DNA primase [Bacteroides sp. 1_1_6]
          Length = 730

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 141/484 (29%), Positives = 232/484 (47%), Gaps = 26/484 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++ ++V   +R  N     Y   CPFH+EKTPSF  + +KG  
Sbjct: 2   IDQVTIDRILDAAQIVDVVSEFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPAKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
            CFSC   G+ + F+      S+ E+++ LA    + +   +   E+K+    +  +  +
Sbjct: 57  KCFSCGKGGNSVHFIMEHEQMSYYEALKYLAKKYNIEIKERELTNEEKQAQTTRESMFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y  +RG     IE F+LGY  +S  ++ +   +KG+
Sbjct: 117 NNFARDYFQNILKNHVDGRSIGLAYFRQRGFRDDIIEKFQLGYCTESHDAMSQEALRKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +++ G+  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 177 KKEFLVKTGICYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLSTATKGVKVKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + +  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVRQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+RL+ + +  I + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 286 ASSGTALTPGQIRLIHRFTNNITVLYDGDVAGIKASIRGIDM---LLEEGMNIKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +    F+  I E                +   P +RAEL  ++   I+ I
Sbjct: 343 GDDPDSFARKHNSEEFQAFIHEHEKDFIRFKTDLLMEDAGRDPIKRAELISNIVRSISVI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +  +R  Y +     L+   +  + E +       + A        S     +S     
Sbjct: 403 PEAIIRDVYIKECSQHLRIEEKLLVAEVAKLREAQAEKANRPSYNHSSSTTGDTSGTAAA 462

Query: 476 LSKK 479
               
Sbjct: 463 SGTP 466


>gi|309807566|ref|ZP_07701518.1| DNA primase [Lactobacillus iners LactinV 01V1-a]
 gi|308169172|gb|EFO71238.1| DNA primase [Lactobacillus iners LactinV 01V1-a]
          Length = 501

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 144/497 (28%), Positives = 233/497 (46%), Gaps = 26/497 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I ++   + I ++I QYV   ++       DY   CPFH EKTPSF  ++SK F+
Sbjct: 5   IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+   FL      SF ESV  +A IA + +P            +  + ++  
Sbjct: 60  KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117

Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            AT+F+ H L   +  +    Y+ ER + S  I  FK+GYAP +   L   L+QK +S++
Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
            + ++GL I         DRFR+RL+FP+    G  IAF GR +S    + KY+NSPET 
Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K K LY+F  A + +          N  + +IL EGYMDV++  + G++  V+S+GT
Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NVENHLILYEGYMDVIAAYKCGIKTGVASMGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ +L +++P I++ +DGDDPG  A  +AI L      P   +  V L    DPD
Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNINLGIVSLPEHLDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++ YG   +   +  ++   + L +R ++  +     ++ +        I    D   
Sbjct: 344 EYVKKYGPEKYVNEVKAAITSTEFLLQRMSKKYNLFNDRDKLDFINESIALIAKNDDPIE 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477
              Y Q +  +LQ   +          R  +    + +      P+  +    L     S
Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPTDEVTPKQLDNVHDS 463

Query: 478 KKPSLREAALLLTLINH 494
                 +  LL   I++
Sbjct: 464 SVSFTEQKRLLFLFIHN 480


>gi|29349340|ref|NP_812843.1| DNA primase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341248|gb|AAO79037.1| DNA primase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 730

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 141/484 (29%), Positives = 232/484 (47%), Gaps = 26/484 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++ ++V   +R  N     Y   CPFH+EKTPSF  + +KG  
Sbjct: 2   IDQVTIDRILDAAQIVDVVSEFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPAKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
            CFSC   G+ + F+      S+ E+++ LA    + +   +   E+K+    +  +  +
Sbjct: 57  KCFSCGKGGNSVHFIMEHEQMSYYEALKYLAKKYNIEIKERELTNEEKQAQTTRESMFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y  +RG     IE F+LGY  +S  ++ +   +KG+
Sbjct: 117 NNFARDYFQNILKNHVDGRSIGLAYFRQRGFRDDIIEKFQLGYCTESHDAMSQEALRKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +++ G+  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 177 KKEFLVKTGICYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLSTATKGVKVKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + +  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVRQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+RL+ + +  I + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 286 ASSGTALTPGQIRLIHRFTNNITVLYDGDVAGIKASIRGIDM---LLEEGMNIKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +    F+  I E                +   P +RAEL  ++   I+ I
Sbjct: 343 GDDPDSFARKHNSEEFQAFIREHEKDFIRFKTDLLMEDAGRDPIKRAELISNIVRSISVI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +  +R  Y +     L+   +  + E +       + A        S     +S     
Sbjct: 403 PEAIIRDVYIKECSQHLRIEEKLLVAEVAKLREAQAEKANRPSYNHSSSTTGDTSGTAAA 462

Query: 476 LSKK 479
               
Sbjct: 463 SGTP 466


>gi|28896248|ref|NP_802598.1| DNA primase [Streptococcus pyogenes SSI-1]
 gi|28811499|dbj|BAC64431.1| putative DNA primase [Streptococcus pyogenes SSI-1]
          Length = 604

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 156/637 (24%), Positives = 273/637 (42%), Gaps = 52/637 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   GD   F+       F+ESVQ +A   G+ L   P       + +     L+
Sbjct: 66  FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNISPSQAVIASQHKHPNHALM 125

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A  F+H  L      +    YL +RG+D   IE F +G APD    L + L +K 
Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKY 233
           + E +++ +GL    D S T YD FRNR++FP+   RG +IAF GR  +  +      KY
Sbjct: 185 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADTEKRQAKY 244

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            NS  T+LF+K   LY+   A   + K          +  + L+EG+MDV++  ++G +N
Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+S+GTALT+  +  L +++ ++VL +DGDD G  A  K+++L+   ++       V +
Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPD F++ +   AF  L+ +S       +    +  + +    +      +   I 
Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  ++ Y   I D L       + +     R   +  R          L+  +L  
Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPM 467

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K     +  E+ L+  L++H  +L E      D  +D + L+ L+  L           
Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 519

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592
                  +      E+ ++++R   +    +   E  + ++         L KR +LL  
Sbjct: 520 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           R   +  K++ + + KG  +    ++        ++ 
Sbjct: 568 RDLHKQGKKVRESSNKGYHQAALEVLEHFIAQKRKME 604


>gi|317153215|ref|YP_004121263.1| DNA primase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943466|gb|ADU62517.1| DNA primase [Desulfovibrio aespoeensis Aspo-2]
          Length = 590

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 170/622 (27%), Positives = 264/622 (42%), Gaps = 44/622 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            R  ++ +   I I++++ +YVD        V G +   CPFH E  PS   ND +GF+Y
Sbjct: 2   DRSAVEAVKARISIADIVRRYVDLK-----PVSGRWMGACPFHQETKPSMSVNDDEGFFY 56

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLI 121
           CF C   GD   F + + G  F E+++ LAA AGV L  V  DP   +++     L  + 
Sbjct: 57  CFGCQASGDVFDFYARINGLEFREALEHLAAEAGVELGNVPHDPHAAERKARIAMLFDMH 116

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           + A  +F  +L          YL +RG+    I  F LGY+PD    L  HL+ KG + E
Sbjct: 117 DEANAWFQRNLTMEAGAVAREYLTKRGMTPDVIRKFGLGYSPDDWRGLESHLKGKGRTPE 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
             +EAGLL   +     YDRFR RLIFPI++  G+VIAFGGR +      KYLNS +T +
Sbjct: 177 LGVEAGLLSQNEKGNI-YDRFRGRLIFPIQNLSGRVIAFGGRII-TDGEPKYLNSSDTPI 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           + KG +LY    A + + +S R           +L EGYMDV+SL Q G  +    LGTA
Sbjct: 235 YKKGDHLYGLNLARSTMTRSKRA----------LLTEGYMDVISLHQFGYTDACGVLGTA 284

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT  Q++ L     R+ L FDGD  G +AA K+  ++L     G     VL+ +GED DS
Sbjct: 285 LTPEQVKRLAGFCSRVDLVFDGDGAGRKAALKSSRMILLQ---GVACRVVLMPQGEDVDS 341

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            ++  G   FE  + ++   +D          +       A+        +  + D  LR
Sbjct: 342 LLQTKGAEGFEACMEQAPDGLDFCMTTLRNEFAPREIMAWAKG------FLTDLPDASLR 395

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
            +Y   I   L      +  +    G       R   ++G  Q              K  
Sbjct: 396 AFYLPRIAGGLGLSEADFRRDTGVSGPPRNTPGRRPPERGSHQAQDGQGRQNLPAVGKED 455

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             +   L   I +P  +Q   +              LW  L +           +I  +L
Sbjct: 456 HDDKYFLRFAIQYPDYVQALAERGFAHVLATQWAGALWEKLVNAQH-------GQILSQL 508

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            ++      K    + R     +A T   ++D  +     +A  ++       + ++++ 
Sbjct: 509 NDQE-----KSFYFKCRAEVRQTALTGRELLDEWEHICNKIAFAQQ----KEDRRQLKEA 559

Query: 602 IAQVTAKGEAEKTAILISILHE 623
           + Q    G+ ++       L E
Sbjct: 560 LNQAQLSGDRQRINECFRALEE 581


>gi|150003051|ref|YP_001297795.1| DNA primase [Bacteroides vulgatus ATCC 8482]
 gi|254882334|ref|ZP_05255044.1| DNA primase [Bacteroides sp. 4_3_47FAA]
 gi|294775922|ref|ZP_06741421.1| DNA primase [Bacteroides vulgatus PC510]
 gi|319640614|ref|ZP_07995333.1| DNA primase [Bacteroides sp. 3_1_40A]
 gi|149931475|gb|ABR38173.1| DNA primase [Bacteroides vulgatus ATCC 8482]
 gi|254835127|gb|EET15436.1| DNA primase [Bacteroides sp. 4_3_47FAA]
 gi|294450291|gb|EFG18792.1| DNA primase [Bacteroides vulgatus PC510]
 gi|317387784|gb|EFV68644.1| DNA primase [Bacteroides sp. 3_1_40A]
          Length = 691

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 162/708 (22%), Positives = 300/708 (42%), Gaps = 99/708 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++ ++V   +R  N     +   CPFHD+KTPSF+ + +KG  
Sbjct: 2   IDQPTIDRILDAAQIVDVVSEFVTLRKRGVN-----FVGLCPFHDDKTPSFYVSPAKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CF+C   G+ + F+      ++ E+++ LA    + +   +   E+K+   I+  L  +
Sbjct: 57  KCFACGKGGNAVHFVMEHEQMTYPEALRWLAKKYNIEIKERELTDEEKQVQNIRESLFVV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A D+F + L N  D +     Y  +RGI    ++ F+LGY+  +  +L +   +KG+
Sbjct: 117 NEFARDYFQNILYNHADGKAIAMSYFRQRGIRDDIVKKFQLGYSTTAPDALAQEAMRKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
            +E +++ GL  + ++  +  DRF  R+IFP  +  G+V+ FGGR L    KG + KY+N
Sbjct: 177 KKEFLLKTGLCYEKEDG-SLRDRFWGRVIFPWFNISGKVLGFGGRVLDSRTKGVNQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ +F K K LY  + A   + K          +  + +VEGY DV+++ Q G++NVV
Sbjct: 236 SPESEIFSKRKELYGIYQAKAAIVK----------ADCVYMVEGYTDVIAMHQCGLENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+E Q+RLL + +  I L +DGD+ G++A+ + ID+    L  G  +  +LL  
Sbjct: 286 ANSGTALSEQQIRLLHRFTSNITLLYDGDEAGIKASIRGIDM---LLAEGMNIKVLLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F K I +                +   P +RA L   +   I  I
Sbjct: 343 GDDPDSFSRKHNATEFRKYIDDHEENFIRFKTNLLLKDAQRDPIKRAGLISDMARSIGLI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV--- 472
            D+ +RY         L    Q  + E   +      N   + +K         SL    
Sbjct: 403 PDKVIRYTCLTECATLLNVNEQIILDEIKKHLLQRDDNYLEQIKKEKDASATTGSLPPAD 462

Query: 473 -----------------------------------------KGKLSKKPSLREAALLLTL 491
                                                    +G+      ++E  LL TL
Sbjct: 463 TPFPAGSIPPADMPPLGVDDNVPPPFPPAEAEAGYQSYIPQEGREKYVFYVKEQLLLQTL 522

Query: 492 INHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYF 532
           I H                   +++    +L   ++++ N   +K+ +       E    
Sbjct: 523 IRHGEKVMCYVETEENTETPLTVIEYISMDLKQDELQFHNPLHRKILAE-----AEAHLH 577

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----RF 588
            P    +R         + +L   + +     + + +  +   +     L  ++    + 
Sbjct: 578 DPNFTAERYFLAHPDPTISKLAADMINDRYQLSKSNSQAMVKDEERLHELVPHQLIDFKL 637

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +L    +   + + +      A+K   +++   E+  ++ +I ++ A
Sbjct: 638 AILEEDMKYTLQALNKPEVVANADKCLEVMAHFKEL-SELQKIMAKRA 684


>gi|254994013|ref|ZP_05276203.1| DNA primase [Listeria monocytogenes FSL J2-064]
          Length = 445

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 135/461 (29%), Positives = 222/461 (48%), Gaps = 26/461 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +     I ++IG YV   ++  N     Y   CPFH EKTPSF  +  K  
Sbjct: 3   RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115
           ++CF C   G+  SFL    G +F+ESV+++A ++     + LP       + K+     
Sbjct: 58  FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPEERDTSNLPKETSETA 117

Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            ++ + ++    +H+ L           YL ERG+    +  F++G+AP+   ++   L 
Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMTTFQIGFAPNHHATITAFLE 177

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           ++G   +    AGLL + D+     DRFRNR++FPI + RGQ+IAF GR   + +  KYL
Sbjct: 178 KRGMDLQLAGRAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +F+K + L++F  A   ++K             I L+EG+MDV+S  +AGVQN 
Sbjct: 237 NSPETPVFNKRRILFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GT+LTE    L+ +L+ R ++C+DGD  G+ AAYKA  L++           + L 
Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344

Query: 355 RGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            G+DPD FIR  G   F++    + +             R+     ++          I 
Sbjct: 345 AGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIHYLRRERNLQNETDQIGYIDDCLREIA 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
            +     R  Y + + D  +   +    +     +  +K+ 
Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSR 445


>gi|15639483|ref|NP_218933.1| DNA primase (dnaG) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025723|ref|YP_001933495.1| DNA primase [Treponema pallidum subsp. pallidum SS14]
 gi|9910815|sp|O83505|PRIM_TREPA RecName: Full=DNA primase
 gi|3322781|gb|AAC65479.1| DNA primase (dnaG) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018298|gb|ACD70916.1| DNA primase [Treponema pallidum subsp. pallidum SS14]
 gi|291059870|gb|ADD72605.1| DNA primase [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 605

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 156/638 (24%), Positives = 256/638 (40%), Gaps = 44/638 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +   + + +L+G Y   +RR       D+W  CPFH E+TPSFH    K  
Sbjct: 3   RISAHVIDAIADRVDLVSLVGNYTHLERRG-----DDWWGRCPFHHERTPSFHVVPDKKM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIR 119
           YYCF C V G  + F   +    F E+  RLA  AG+ +   D              L  
Sbjct: 58  YYCFGCGVGGSTIKFFMEIEKIDFHEAAVRLAKRAGIEMSFEDGVHAPSAHASFTMQLCE 117

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + +   + FHH L   A+  R   YL  R +   +I  FKLGYAP     L + LR KG+
Sbjct: 118 VYQRIAETFHHVLMHTAQGARARAYLASRKVTDDSIRTFKLGYAPPDPVWLFQFLRHKGY 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S E +  +GL             F +R+++PI    GQVIAFG R L      KYLN+ +
Sbjct: 178 SPEFLARSGLFAKKSER---IAVFSDRIMYPIADRYGQVIAFGARAL-GTAPAKYLNTAD 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
              + KG++L+ F  AL+ ++K+             I+ EGYMDV++  QA +   V+ L
Sbjct: 234 MPQYKKGEHLFAFHCALSQMRKTRAA----------IICEGYMDVIAFHQAQLTYAVAPL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           G  LT+ Q RL+     RI +CFD D  G  A YKAI L       G  V  V L+ G D
Sbjct: 284 GALLTKSQARLMRSFVDRIYMCFDADGAGRAATYKAILLCRSL---GFEVRIVELNGGTD 340

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P       G+ A  K +  S      L +      S    D+ +     L   ++ +   
Sbjct: 341 PAECACIEGEDALRKSVERSTTDAQYLIRCARHEHSHLGADDTSRAVSFLFPYLSVLDSA 400

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R    Q I        Q    +   Y RY  +  +          +  +++   + + 
Sbjct: 401 IQREQVMQDIAMAFGIRIQAVHAD---YLRYVSRTTQKGTTGNCVLSVQGTAIQVKEPAT 457

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  L+L ++ +P + +   + +    +++   ++L+  L   +       P  + 
Sbjct: 458 GVRTAQLRLVLAVVANPELFELLRESVCADDFEDPMAKELFIILEECYRADTRASPHVLS 517

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               +        +L + V +A +    +      VR G         R   L +++E +
Sbjct: 518 CCTTD--------ELRKLVSEAIVCGEFSCNAPQIVRDGV-----ALVRRNRLLKERESL 564

Query: 599 EKQIAQVTAKGEAEK---TAILISILHEVHIQIHQIES 633
             ++ +       E+      L+     V  ++ +++ 
Sbjct: 565 VGRLRRFGDASSGEECGSMQELMMEKQRVDEELERLKG 602


>gi|153807324|ref|ZP_01959992.1| hypothetical protein BACCAC_01602 [Bacteroides caccae ATCC 43185]
 gi|149129686|gb|EDM20898.1| hypothetical protein BACCAC_01602 [Bacteroides caccae ATCC 43185]
          Length = 700

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 158/702 (22%), Positives = 287/702 (40%), Gaps = 99/702 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++  +V   +R  N     Y   CPFH +KTPSF+ + +KG  
Sbjct: 2   IDQATIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHSDKTPSFYVSPAKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120
            CF+C   G+ + F+ A    S+ E+++ LA    + +   +   E+K  +  +  L  +
Sbjct: 57  KCFACGQGGNAVHFIMAHEQMSYPEALRYLAKKYNIEIKERELSDEEKLVQSERESLFIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A D+F + LKN  D R     Y   RG     IE F+LGY  +S  +L +   QKG+
Sbjct: 117 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDALAKEALQKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            +E +++ GL  +  +     DRF  R+IFP+ +  G+V+AFGGR L   +KG  VKY+N
Sbjct: 177 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK   LY  + A   + K  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+R++ + +  + + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 286 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F+  I E                +   P +RAEL  +L   I+ I
Sbjct: 343 GDDPDSFARKHNSTEFQAFIAEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------------------ 457
            +  +R  Y +     L    +  ++E +       +    +                  
Sbjct: 403 PEAIVRDVYIKECAQLLHIEDKLLVSEVAKRRETQAEKRAEQTERDRRIAERTANMTQGG 462

Query: 458 ---------------------------------DQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                                                           +GK  ++    E
Sbjct: 463 ATASPSSDNGIPMPPEDVMLAPEVDGDGNYLNVPPALQEDNYASFIPQEGKEGQEFYKFE 522

Query: 485 AALLLTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSD 525
             +L  ++ +                   +++    +L   D+ + N   +++ S   + 
Sbjct: 523 RLILQAVVRYGEKIMCNLTDEEGNEVPVTVIEYVINDLKEDDLAFHNPLHRQILSEAAAH 582

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LA 583
                +           +    +L   L         + + ++  + D  + Y+    L 
Sbjct: 583 IHNVGFVAERYFLAH-PDPVISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYELVPMLM 641

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           +  ++ +++ + + +   +       + EK   L+   +++ 
Sbjct: 642 INFKYAIVTEELKHMLYALQDPALAHDEEKCNALMIRYNDLR 683


>gi|320160281|ref|YP_004173505.1| DNA primase [Anaerolinea thermophila UNI-1]
 gi|319994134|dbj|BAJ62905.1| DNA primase [Anaerolinea thermophila UNI-1]
          Length = 632

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 165/654 (25%), Positives = 282/654 (43%), Gaps = 57/654 (8%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYYCFS 66
           I ++   I I +L+ + V   R   N     Y   CPFH + +TPSF      G + CF 
Sbjct: 4   IDEIKSRIDIVDLVSETVQLRRAGKN-----YTGFCPFHPNTRTPSFVVFPETGTWRCFG 58

Query: 67  -CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
            C+  GD   F+    G  F +++  LA  AGV L V+ P+ E++ +    L  L+E A 
Sbjct: 59  ACNEGGDIFRFVMKKEGWDFSQALHFLAEKAGVKLEVMTPQKEEEREEFERLRALLEEAV 118

Query: 126 DFFH-HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
            F+  H L+    K    YL  RG+    IE F LGYAP+   +  ++   K +S + + 
Sbjct: 119 TFYRFHLLETPAGKPALEYLYHRGLTRATIEAFGLGYAPEGWDNALKYFTGKKYSIDDLR 178

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
           +AGLL +       +DRFR+R++FPIR   G++  FG R L+  +  K+LNSP+T LF K
Sbjct: 179 QAGLLSES-EEGRVFDRFRHRIMFPIRDVNGKMAGFGARILNPQDMPKFLNSPQTPLFDK 237

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
           GK LY    A   ++               ++VEGY+DV++L QAG +N VS +GTALTE
Sbjct: 238 GKLLYGLDRARKAIR----------QMDQAVIVEGYLDVIALHQAGFENAVSPMGTALTE 287

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID------------------LVLCHLIPGN 346
            QLRLL + + RIVL  D D  G +A  + ++                  L+        
Sbjct: 288 DQLRLLKRFTRRIVLALDPDTAGQKATLRGLEVARQAMDQSTEVVFDARGLLRHEARLQA 347

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
            +  V L  G+DPD  +      A++ LI  + P+V  + +     ++ + P  ++E+  
Sbjct: 348 DLRVVTLPEGKDPDDLVLS-DPEAWKTLIANARPVVIHVMETLAAGQNLDDPKVKSEIAA 406

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            +   I  I +   R  Y Q +   L+   + ++   +       +  R          +
Sbjct: 407 QVLPLIEDIGNPIEREDYRQRLARLLRVDERAFVGMSTPRAERTPRRRREPVPATAKPPV 466

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSD 525
           + +      L ++        L  L +    LQ+     L  + ++  + Q+L   +   
Sbjct: 467 LTTVRPTRALEEQTLRLLLHFLELLSDLDRFLQQNRLARLGVMDFEQADHQQLMRVILDA 526

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
              Q  +  +E  ++       E L    + + +  +            ++ ++Q +   
Sbjct: 527 M-NQDEYDVDEYVRQFTPESLQEKLSDYLKPLGEKEISP----------QEAFEQLVRTI 575

Query: 586 KRFRLLSRQKEEIEKQIA--QVTAKGEAEKTAILISILH---EVHIQIHQIESQ 634
            R R L     E+  Q+       +G+++    L+  +    E+   IH  + Q
Sbjct: 576 LRLRELH--IREVLDQLRFLSAEGQGDSDFQTGLLESMKQSAEILRYIHYAQKQ 627


>gi|306827614|ref|ZP_07460894.1| DNA primase [Streptococcus pyogenes ATCC 10782]
 gi|304430177|gb|EFM33206.1| DNA primase [Streptococcus pyogenes ATCC 10782]
          Length = 601

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 155/637 (24%), Positives = 271/637 (42%), Gaps = 55/637 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   GD   F+       F+ESVQ +A   G+ L   P       + +     L+
Sbjct: 66  FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNISPSQAVIASQHKHPNHALM 125

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A  F+H  L      +    YL +RG+D   IE F +G APD    L + L +K 
Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL----SKGESVKY 233
           + E +++ +GL    D S T YD FRNR++FP+   RG +IAF GR       +    KY
Sbjct: 185 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADMEKRQAKY 244

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            NS  T+LF+K   LY+   A   + K          +  + L+EG+MDV++  ++G +N
Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+S+GTALT+  +  L +++ ++VL +DGDD G  A  K+++L+   ++       V +
Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRM 349

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPD F++ +   AF  L+ +S       +    +  + +    +      +   I 
Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  ++ Y   I D L       + +     R   +  R              +L  
Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQAQAISNLV-----TLPM 464

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K     +  E+ L+  L++H  +L E      D  +D + L+ L+  L           
Sbjct: 465 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 516

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592
                  +      E+ ++++R   +    +   E  + ++         L KR +LL  
Sbjct: 517 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 564

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           R   +  K++ + + KG+ +    ++        ++ 
Sbjct: 565 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 601


>gi|189462951|ref|ZP_03011736.1| hypothetical protein BACCOP_03653 [Bacteroides coprocola DSM 17136]
 gi|189430233|gb|EDU99217.1| hypothetical protein BACCOP_03653 [Bacteroides coprocola DSM 17136]
          Length = 731

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 146/486 (30%), Positives = 241/486 (49%), Gaps = 27/486 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++ ++V   RR  N     Y   CPFH+EKTPSF  + SKG  
Sbjct: 2   IDQATIDRILDAAQIVDVVSEFVTLRRRGVN-----YIGLCPFHNEKTPSFSVSPSKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
            CFSC   G+ + F+      S+ E+++ LA    + +   +   E+K+    +  L  +
Sbjct: 57  KCFSCGKGGNVVHFIMEHEQLSYYEALKWLARKYNIEVKERELTNEEKQAQSLRESLFVV 116

Query: 121 IEVATDFFHHSLKNARDKR--LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A+++F   L N  D +     YL  RG     I+ F+LGY+ DS  +L +   QKG+
Sbjct: 117 NQFASEYFQDVLYNHIDGQRIGMTYLRGRGFRDDIIKKFQLGYSTDSPDALAKAAIQKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            EE +++ GL    DN  + +DRF  R+IFP+ +  G+++AFGGR L   +K   +KY+N
Sbjct: 177 KEEFLVKTGLCYRKDNG-SLHDRFWGRVIFPVHTLSGKIVAFGGRVLSSATKNVQMKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK + LY  + A   + +  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESEIYHKSRELYGIYFAKQAIVRQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+RL+ + +  I + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 286 ASSGTALTSEQIRLIHRFTNNITVLYDGDGAGIKASIRGIDM---LLEEGMNIKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T ++  I +                +   P +RA L   +   I+ I
Sbjct: 343 GDDPDSFARKHNATDYQAYINDHEVDFIRFKTNLLMEEAGKDPIKRASLISSIVKSISVI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            D  +R  Y +     L Q+ +K + E +       +  + ++++    R  Q +     
Sbjct: 403 PDAIVRSVYIRECSQLL-QMEEKILVEATAKLIEQARENKFKEEQRRQYRERQLAATTPN 461

Query: 476 LSKKPS 481
                S
Sbjct: 462 TGTPAS 467



 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 40/144 (27%), Gaps = 20/144 (13%)

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           L+E  L   +  H  +L+E    + D  +               F+        ++   L
Sbjct: 590 LKEDELQFHVALHRQMLKEAEMHIHDENFTAERY----------FIAHPVPEISKVAVDL 639

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                       DR              +  +        L L  +  ++  + +   + 
Sbjct: 640 AS----------DRYQLSKYHSKGQKIISDEERLHELVPRLLLDFKLSIVDEEMKHTLQA 689

Query: 602 IAQVTAKGEAEKTAILISILHEVH 625
           +A      + ++   ++    E+H
Sbjct: 690 LANPEIANDPQRYMEIMQRYKELH 713


>gi|312128162|ref|YP_003993036.1| DNA primase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778181|gb|ADQ07667.1| DNA primase [Caldicellulosiruptor hydrothermalis 108]
          Length = 617

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 138/625 (22%), Positives = 253/625 (40%), Gaps = 50/625 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
              ++ +L  + I +++  YV   +   N     + A CPFH E+TPSF+ + +K  ++C
Sbjct: 33  ERVVEQVLSKVDIVDVVSMYVPLKKVGVN-----FRALCPFHQERTPSFYVSPAKQIFHC 87

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIRLI 121
           F C V G+ + F+  +   +F E+++ LA  A + +        K     K + +LI L 
Sbjct: 88  FGCGVGGNAIHFVMRIENLTFTEALKVLAEKAKIDVDFSQSLSAKDRVLAKQKEELISLH 147

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
               ++F   L    +     Y+ +RGI     + F LG+ P++        ++      
Sbjct: 148 HDCFEYFQRQLYLRENIDAARYVLKRGIRKETAKQFGLGFCPENNNLYEMLSKKYSKEII 207

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
                   I  + +  +Y RF  RLIFPI  +  +VI FGGR +   ++ KY+NSP+T++
Sbjct: 208 DKSG----IFIERNGKNYCRFEGRLIFPIFDTMNRVIGFGGRIIDDSQAPKYMNSPDTLI 263

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K K LY    A              +     ++VEGYMDV+SL Q G+ NVV  LGTA
Sbjct: 264 FSKSKVLYGLNIAK------------GSKEKDFVVVEGYMDVISLHQEGIDNVVGVLGTA 311

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT+    LL +    +VLC D D  G  A +++ D+       G  V  + L   +DPD 
Sbjct: 312 LTQDHSFLLRRYKNEVVLCLDSDQAGKNATFRSGDI---LYQNGLMVKVMELENAKDPDE 368

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKL 420
           +I+ +GK AF      ++ ++D   K+ + N   +  D++           +  I ++  
Sbjct: 369 YIKKFGKDAFLLKKQNAMFVIDFKIKQISSNYDLSKSDQKFRFVREYFEKVLMPISNEVE 428

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y + +    Q      + E +       K           Q+    +  +       
Sbjct: 429 RQEYIKKLSQLTQIDEDAILKEFTKNENIKLKRIESIQHFKQVQQKSNLTEEERIKKNDI 488

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                 LL   +      +     + +  +   +++ L+S + +   E        +   
Sbjct: 489 D-----LLSIYVEWANKSESIRNAVTEDDFCTEDIKILFSSIKNLINEGMELTYSMLLTF 543

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    ++L +L                     ++  ++      R   L R+  E +K
Sbjct: 544 VNDE---KVLSELTSFSSKGF-------ETEEAAKRAIEELKTNNNRMLWLRREMLEAQK 593

Query: 601 QIAQVTAKGEAEKTAILISILHEVH 625
           +       G+ EK   L  ++ ++ 
Sbjct: 594 R-------GDYEKVLKLQMLIRKIK 611


>gi|119944096|ref|YP_941776.1| DNA primase [Psychromonas ingrahamii 37]
 gi|119862700|gb|ABM02177.1| DNA primase [Psychromonas ingrahamii 37]
          Length = 583

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 173/638 (27%), Positives = 286/638 (44%), Gaps = 75/638 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHD-----------EKT 50
             PR+FI DL+    I + I   V   ++       DY ACCPFH+           +K 
Sbjct: 4   RIPRNFIDDLIARTDIVDFIDSRVKLKKQGK-----DYRACCPFHNGNNNSSFSVSSDK- 57

Query: 51  PSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK 110
                     FY+CF+C V G+ LSF+    G  F+++++ LA    + +P  +    K 
Sbjct: 58  ---------QFYHCFNCGVSGNVLSFIMEYDGIEFVDAIETLAEQLSIEVPREESGFGKA 108

Query: 111 EK----IQTDLIRLIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDS 165
            +     + DL +L+     F+   L+  ++ +++  YL  RG+    ++ FK+GYAPD 
Sbjct: 109 HQSSYVDRKDLYQLMADIAVFYQQQLRTHKNSQQVINYLKGRGLSGQTVKHFKIGYAPDG 168

Query: 166 RYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
              +R+        E+++IEAG+LI  + S  SYDRFR+RL+FPI   RG+VI FGGR L
Sbjct: 169 WNEVRKRFAVSADLEKQLIEAGMLISKEKS-GSYDRFRDRLMFPIHDRRGRVIGFGGRVL 227

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
                 KYLNSPET LFHKGK LY  +      ++  R          +++VEGYMDV++
Sbjct: 228 -GDNEPKYLNSPETPLFHKGKELYGLYQVKQAYKEIKR----------VLVVEGYMDVVA 276

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           L Q G+   V+SLGT+ T   ++ L++ +  ++ CFDGD  G  AA++A++  L ++  G
Sbjct: 277 LGQFGIDYAVASLGTSTTPEHIQQLFRHTSEVICCFDGDKAGKAAAWRALENALPYIQDG 336

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             + F+ L+ GEDPDS+++  GK AFEKLI ++LPL D L++        +T D +A+L 
Sbjct: 337 RTLRFMFLADGEDPDSYVQKEGKEAFEKLIEQALPLSDFLFQHLLNQVDMSTADSKAKLA 396

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
                 ++ + D   R      +   L    +             + + R +        
Sbjct: 397 QLAIPLMSKLPDTVFRQMMEGRLIALLGIEKEGLNKLLPAAASNSRIDKRQKVTPM---- 452

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                                 +  L+ HP I     +           L  L + L   
Sbjct: 453 -------------------RLAISVLLQHPNIAYGLPEFPEFKEMTLPGL-SLLNSLLEI 492

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
                     ++ +   E+     L +L   V    +     EA  +D  + +     L 
Sbjct: 493 CRTTPTITTGQLLEHWREKPESSQLNKLA--VWQNDIKEDYYEAFFLDTLENFLN-FHLT 549

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
            +   L +     + ++ Q     E ++ A+L++   +
Sbjct: 550 SKIEFLKQ-----KSRLGQALTSAETQQLALLLAEQKQ 582


>gi|260655918|ref|ZP_05861387.1| DNA primase [Jonquetella anthropi E3_33 E1]
 gi|260629534|gb|EEX47728.1| DNA primase [Jonquetella anthropi E3_33 E1]
          Length = 578

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 169/624 (27%), Positives = 268/624 (42%), Gaps = 54/624 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P   +  +   + +  +IG+ V   ++  N     Y   CPFHDEKTPSF  +  + 
Sbjct: 1   MSDP--IVDQIKAALDVVEVIGESVRLTKKGRN-----YTGLCPFHDEKTPSFMVSQERQ 53

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++CF C   GD  SF+    G SF E+++ LAA AG+ LP      + + ++  DL  L
Sbjct: 54  SWHCFGCGKGGDLFSFVMLKDGLSFPEALEYLAARAGIDLPR-----QGRRQVSKDLFAL 108

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  F+   L+         YL+ R +   A   F+LG+AP++  SL + L++ G SE
Sbjct: 109 MEEAVSFYRQELRGPGGAAARAYLERRNVSPEAAAAFELGWAPNAWQSLSDQLKRGGASE 168

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +++AGL+I G+     YDRFR R+IFPIR+   +V+A GGR +  GE  KYLNSPE  
Sbjct: 169 ASLLKAGLVIQGNRG-NCYDRFRGRVIFPIRNVPSRVVALGGRLI-DGEGAKYLNSPEGE 226

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           L+ K  NLY    A   +++  R           ILVEGYMD L L   G    V+SLGT
Sbjct: 227 LYSKKNNLYLLDRAKESIREKGRS----------ILVEGYMDALRLHLCGWAEGVASLGT 276

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q  LL + + +  +C+D D  G  A  + + L       G  V  V L  G+DPD
Sbjct: 277 ALTEEQAALLRRFADKCYICYDSDLAGQTATLRGMYL---LASEGLTVYVVTLPEGKDPD 333

Query: 361 SFI-RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             +    G  +F K +  +LPLV    K        +   + +   +   + ++ +    
Sbjct: 334 ELLQMPGGPESFTKALDGALPLVSHHIKLFRAQAEQDGVTKASRDLLESLSALSSLDLSP 393

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R      +   L     +   E   + R  + + +  +   P  +  Q   +  +    
Sbjct: 394 HRA----ELCQALGLTDYQLRQELERFRRPVRADVKRSETAAPQSKTSQRDKMFHES--- 446

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               EA +   L +   +   +         +   LQ + + L S        L     Q
Sbjct: 447 ----EACMTYLLWSQKGLRGGREALQVPRLLETPLLQDIAAALLS--GSDPGELESRWLQ 500

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L E    E L + +  +   G              + +   L+   R R   R+   ++
Sbjct: 501 -LGETAQKEALTEGEYSISRFG----------STAEEQWNVLLSALLR-RATERRYAALK 548

Query: 600 KQIAQVTAKGEA-EKTAILISILH 622
           ++I +  A  E   +   L   L 
Sbjct: 549 EKILRGEATEEEVAQWGSLSRELK 572


>gi|313884193|ref|ZP_07817959.1| DNA primase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620640|gb|EFR32063.1| DNA primase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 617

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 166/646 (25%), Positives = 289/646 (44%), Gaps = 47/646 (7%)

Query: 1   MNY-PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M Y P + I  +   + I +++ QYV   ++ +N     Y A CPFH+++ PSF  ++SK
Sbjct: 1   MAYLPEELITRVRQEVNIVDVVNQYVQLKKQGSN-----YTASCPFHEDRNPSFSVSESK 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLI 118
             Y CFSC   G+   F+  + G  F+ +VQ++A + GV L        + K+     L 
Sbjct: 56  QIYKCFSCGRGGNVFGFIQEIEGLDFVAAVQKVADMGGVILDQSLFTHHQSKQSKYQSLY 115

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           ++ E    F+H+ L ++ + +    YL ER +    I+ F+LG APD    L  +L ++G
Sbjct: 116 QIHEKTASFYHYYLTQSQKGQDAFNYLTERKVKQETIDYFQLGAAPDKSELLWAYLEKEG 175

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235
           FSE+ ++ +G+    D+     DRFR RLI P++  RGQV+AF GR    G+    KYLN
Sbjct: 176 FSEQDLLASGIFYQTDSGQIL-DRFRGRLIIPLKDMRGQVVAFSGRVYQSGDHSNAKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F+K K L+N  GA   +++           + +++ EGYMDV++L QAG   VV
Sbjct: 235 SPETAIFNKSKLLFNHDGARASIRQK----------NQVLVCEGYMDVIALHQAGFHEVV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GT+LT+  L  L K++  I   FDGD+ G +A  +A DL         +V  ++L  
Sbjct: 285 ASMGTSLTQDHLTQLGKMTNHIYFIFDGDEAGQKATQRAFDLSQNL--SEIQVKALILPG 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPD FI+  G+ AF+ L+ ++    D + +   ++   +   + +     L   I  I
Sbjct: 343 GQDPDEFIQARGQGAFQDLLNQAQTAYDFVKRYLAKSFDLSQQGDLSLYIQALLKEIQKI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ-------RLMQ 468
             +  +    + +             +        KK    +D K   Q        L Q
Sbjct: 403 PMKIEQELRLRELAQEFDLSENLLKEQFERLDYQRKKETTKQDLKQIEQADAGNTGSLTQ 462

Query: 469 SSLVKGKLSKKPSLR----EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
             +      K  S      E  L + LI +        +  +     ++  ++    L +
Sbjct: 463 ELIFDASPLKIRSQAAFESEKILCMLLIYYEEAWPYIERLASPPMLFHDFARRALMALEA 522

Query: 525 DFVEQKY-FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
            + E    F    I  ++ +R     L     QV         + A + D  +   +   
Sbjct: 523 YYYEGGQSFPLTGIIDQIEDRD----LNHFFTQVLWDREIIPFSLALMDDCLKVIDREFK 578

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                     + +E+++++     K +  K   L+  ++ +  Q+ 
Sbjct: 579 YL--------EVKELQEKLLDAQKKMDKNKANQLMIQMNHLLRQLK 616


>gi|296112138|ref|YP_003622520.1| DNA primase DnaG [Leuconostoc kimchii IMSNU 11154]
 gi|295833670|gb|ADG41551.1| DNA primase DnaG [Leuconostoc kimchii IMSNU 11154]
          Length = 618

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 135/646 (20%), Positives = 260/646 (40%), Gaps = 48/646 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI ++   + I ++IGQY D  +R        +   CPFHD++ PS    ++K  
Sbjct: 4   RIPEAFIAEVRQKVNIVDVIGQYTDLVKRGRQ-----WTGSCPFHDDRHPSLFVEENKQV 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIR 119
           + CFSC   G   SF+    G S+ E++  LA  A + +          + +     + +
Sbjct: 59  FNCFSCGRSGSVFSFVMEKEGLSYPEAILALAEQADMTVDSGISAGVNHQVDGTTQSIYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           L   A   + H L N         Y  D+R +    I+ F +G+ P+   +L  + + + 
Sbjct: 119 LHTAAQRLYQHILLNTTSGEQALAYLHDKRQLTDDIIKQFGIGFVPED-NALLSYAKDQN 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S E +  + L I         DRF  R+++PI++ RGQV+ F GR L++   +KY+NSP
Sbjct: 178 ISPEIMTASELFITNAQGD-LRDRFSGRIVWPIKTERGQVVGFSGRALNQDNKIKYMNSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+  F KGK LYNF  A N+++           ++ +++ EG+MDV+S   AG    V++
Sbjct: 237 ESPFFTKGKILYNFDLAKNHIR----------QTNTVMIFEGFMDVISADMAGKSVGVAT 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALT   ++ L +++ RI+L +DGD+ G  AA ++I+L+  H      +  V L    
Sbjct: 287 MGTALTREHVQQLARVAQRILLVYDGDEAGQNAARRSINLIREHAK-NMDIGVVHLPDNL 345

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD      G    ++++ +++            +    +   +    +        +  
Sbjct: 346 DPDEVRIQRGLKVLQQVLEQNIQTPVEFLVNAARSGKNLSNQVQYLSFLQEVMDTLKLAT 405

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              +      I +      Q    +     +      R R+ +              +  
Sbjct: 406 PVEQDIQLTRIANEFGTEKQALQAQLKQSIKQKPHQNRDRNTQDEYVMEPPVYHDNFEAE 465

Query: 478 KKP-----------SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
                            E ALL+ +I  P ++    +      + +++ Q L   L + +
Sbjct: 466 APINVTINQTITQVEQAERALLMAMIKSPQVMLRVKET-TGFAFLHSDYQ-LLMMLTNIY 523

Query: 527 VEQ--KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
             Q    F   +    + +    + +  ++R   D  +            ++     L +
Sbjct: 524 QAQNPGPFNLAQYMDFVQKPELNQKIMAMERTYGDLAIE-----------KEAINDYLRI 572

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             +   +  Q  ++++ I     + +  K   L++ L  +  +  Q
Sbjct: 573 IMQDAPIETQIHKLQQLITIAKQQHDDTKLLQLMTELINIKKKQSQ 618


>gi|309805249|ref|ZP_07699301.1| DNA primase [Lactobacillus iners LactinV 09V1-c]
 gi|308165483|gb|EFO67714.1| DNA primase [Lactobacillus iners LactinV 09V1-c]
          Length = 495

 Score =  317 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 144/497 (28%), Positives = 232/497 (46%), Gaps = 26/497 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I ++   + I ++I QYV   ++       DY   CPFH EKTPSF  ++SK F+
Sbjct: 5   IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+   FL      SF ESV  +A IA + +P            +  + ++  
Sbjct: 60  KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYF 117

Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            AT+F+ H L   +  +    Y+ ER + S  I  FK+GYAP +   L   L+QK +S++
Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
            + ++GL I         DRFR+RL+FP+    G  IAF GR +S    + KY+NSPET 
Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K K LY+F  A + +          N+ + +IL EGYMDV++  + G++  V+S+GT
Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NAENHLILYEGYMDVIAAYKCGIKTGVASMGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT  Q+ +L +++P I++ +DGDDPG  A  +AI L      P   +  V L    DPD
Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNMNLGIVSLPENLDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +++ YG   +   +  +    + L +R  +  +     ++ +        I    D   
Sbjct: 344 EYVKKYGPEKYVNEVKAATTSTEFLLQRMAKKYNLFNDRDKLDFINESITLIAKNDDPIE 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477
              Y Q +  +LQ   +          R  +    + +      P+  +    L     S
Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPADEVTPKQLDNVHDS 463

Query: 478 KKPSLREAALLLTLINH 494
                 +  LL   I++
Sbjct: 464 SASFTEQKRLLFLFIHN 480


>gi|212691812|ref|ZP_03299940.1| hypothetical protein BACDOR_01307 [Bacteroides dorei DSM 17855]
 gi|237708596|ref|ZP_04539077.1| DNA primase [Bacteroides sp. 9_1_42FAA]
 gi|237724136|ref|ZP_04554617.1| DNA primase [Bacteroides sp. D4]
 gi|265755194|ref|ZP_06089964.1| DNA primase [Bacteroides sp. 3_1_33FAA]
 gi|212665713|gb|EEB26285.1| hypothetical protein BACDOR_01307 [Bacteroides dorei DSM 17855]
 gi|229437596|gb|EEO47673.1| DNA primase [Bacteroides dorei 5_1_36/D4]
 gi|229457296|gb|EEO63017.1| DNA primase [Bacteroides sp. 9_1_42FAA]
 gi|263234336|gb|EEZ19926.1| DNA primase [Bacteroides sp. 3_1_33FAA]
          Length = 691

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 159/708 (22%), Positives = 297/708 (41%), Gaps = 99/708 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++ ++V   +R  N     +   CPFHD+KTPSF+ + +KG  
Sbjct: 2   IDQPTIDRILDAAQIVDVVSEFVTLRKRGVN-----FVGLCPFHDDKTPSFYVSPAKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CF+C   G+ + F+      ++ E+++ LA    + +   +   E+K+   I+  L  +
Sbjct: 57  KCFACGKGGNAVHFVMEHEQMTYPEALRWLAKKYNIEIKERELTDEEKQVQNIRESLFVV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A D+F + L N  D +     Y  +RGI    ++ F+LGY+  +  +L +   +KG+
Sbjct: 117 NEFARDYFQNILYNHADGKAIAMSYFRQRGIRDDIVKKFQLGYSTTASDALAQEAMRKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
            +E +++ GL  +     +  DRF  R+IFP  +  G+V+ FGGR L    KG + KY+N
Sbjct: 177 KKEFLLKTGLCYEK-EDGSLRDRFWGRVIFPWFNISGKVLGFGGRVLDSRTKGVNQKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ +F K K LY  + A   + K          +  + +VEGY DV+++ Q G++NVV
Sbjct: 236 SPESEIFSKRKELYGIYQAKAAIVK----------ADCVYMVEGYTDVIAMHQCGLENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTAL+E Q+RLL + +  I L +DGD+ G++A+ + ID+    L  G  +  +LL  
Sbjct: 286 ANSGTALSEQQIRLLHRFTSNITLLYDGDEAGIKASIRGIDM---LLAEGMNIKVLLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T F K I +                +   P +RA L   +   I  I
Sbjct: 343 GDDPDSFSRKHNATEFRKYIDDHEENFIRFKTNLLLKDAQRDPIKRAGLISDMARSIGLI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV--- 472
            D+ +RY         L    Q  + E   +      N   + +K         SL    
Sbjct: 403 PDKVIRYTCLTECATLLNVNEQIILDEIKKHLLQRDDNYLEQIKKEKDASATIGSLPSAD 462

Query: 473 -----------------------------------------KGKLSKKPSLREAALLLTL 491
                                                    +G+      ++E  LL TL
Sbjct: 463 APFPAGSIPPADMPPIEVDDDVPPPFPPAEAEAGYQSYIPQEGREKYVFYVKEQLLLQTL 522

Query: 492 INHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYF 532
           I H                   +++    +L   ++++ N   +K+ +   +   +  + 
Sbjct: 523 IRHGEKVMCYVETEENTETPLTVIEYISMDLKQDELQFHNPLHRKILAEAEAHLHDSNFT 582

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----RF 588
                            + +L   + +     + + +  +   +     L  ++    + 
Sbjct: 583 AERYFLAH-----PDPTISKLAADMINDRYQLSKSNSQAMVKDEERLHELVPHQLIDFKL 637

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +L    +   + + +      A+K   +++   E+  ++ +I ++ A
Sbjct: 638 AILEEDMKYTLQALNKPEVAANADKCLEVMAHFKEL-SELQKIMAKRA 684


>gi|50365085|ref|YP_053510.1| DNA primase [Mesoplasma florum L1]
 gi|50363641|gb|AAT75626.1| DNA primase [Mesoplasma florum L1]
          Length = 626

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 148/642 (23%), Positives = 282/642 (43%), Gaps = 34/642 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P++ I D++    I +++ + V   ++  N     +W  CPFH ++  S   +  K 
Sbjct: 4   MLIPKEVIDDIIEKSDIVSIVSERVALSKKGRN-----FWGLCPFHQDQNASMSVSPEKK 58

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F+ CFSC V G  L F+      SF E++++LA I    L   + +   K+   T + +L
Sbjct: 59  FFKCFSCQVSGTVLDFVKDFDNISFQEAIKKLAVILNYDLSKFENENPVKQNKNTIIYKL 118

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E +  FF  +L++   K    YL  R I +  I  F++G+ P +  SL EHL  KG++ 
Sbjct: 119 NEESLAFFKLNLRSNEAKHAVKYLHSRDITNEDIAFFEIGFLPKN-NSLVEHLISKGYNI 177

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239
             I+EAGL    +     YD F +R++FPIR+   ++I F GR +    E  KYLN+ ET
Sbjct: 178 SDIVEAGLGTYNEERQKMYDIFTDRIMFPIRNENKELIGFSGRIIETNSEKPKYLNTKET 237

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K K  YNF  A+   +              +I++EGYMDV+SL + G+ N ++ +G
Sbjct: 238 PVFSKRKIAYNFSEAIKSAR----------VKKELIVLEGYMDVISLHKNGIDNTIALMG 287

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TAL++Y + +   +   I +  DGD+PG++     I+     ++   +V  V      DP
Sbjct: 288 TALSQYHVSIFKNIKGTIKMFLDGDEPGIKG---NIEASQTLILNNQKVLVVNNPTNNDP 344

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D  I+   K   EK+I E+L  ++ +  +     +    +   E    + + +    +  
Sbjct: 345 DELIKQGKKAEIEKMISEALNPLEYIISKRWPKVNSKDFNSVEEFMKEICSFVLKCNNNI 404

Query: 420 LRYYYSQAI-------RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           L       +       ++ +   ++K + +        K        +  +     +S  
Sbjct: 405 LYETSIDELEKITGLSKEAIINFYKKILNKQINSISNNKVEEVKTSSEKQAVNNKNTSFN 464

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
                K   L E  +L  LI     L+    ++ ++++ + E  +L   + + + E   +
Sbjct: 465 ILSSLKAYELAEKTILFDLIKSNKNLELIKDKIREVKFPHKEFGRLILKIINSYEENMNY 524

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              EI + + +    E L++++    D  +     EAN   + +   + L +Y       
Sbjct: 525 NETEIKEIINQNFSQETLEEINLYESDPLMVRIKPEANTAKLIENSFEKLKMYSN----E 580

Query: 593 RQKEEIEKQIAQVT-AKGEAEKTAILISILHEVHIQIHQIES 633
           ++  EI + +     +K + +    ++S    +  +   + +
Sbjct: 581 KKIAEINEMLNSNNLSKNDRDNLMDILSE--RIKKREEWLGN 620


>gi|157413286|ref|YP_001484152.1| DNA primase [Prochlorococcus marinus str. MIT 9215]
 gi|157387861|gb|ABV50566.1| DNA primase [Prochlorococcus marinus str. MIT 9215]
          Length = 677

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 152/628 (24%), Positives = 273/628 (43%), Gaps = 53/628 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           +     I+++     I ++I +++   ++       ++   CPFHD+  PS   + SK F
Sbjct: 4   SIHPRTIQEVKEKADIVDVISEHIVLKKKGK-----EFVGICPFHDDTKPSMTVSPSKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EKKEKIQTDL 117
           YYCFSC   G+ + FL      +F + V  LA    + +  +        +K+   + +L
Sbjct: 59  YYCFSCGAGGNSIKFLMEFTRANFSDVVLSLAKKNNINVENLQGSQVEAYKKQLSRKEEL 118

Query: 118 IRLIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            +++ +  ++F   L N+   + + Y + +R +    I+ F+LGYAP+S   L  +L   
Sbjct: 119 YKILRITKNWFKSQLNNSMGVEAMKYLISKRNLSKKIIDDFELGYAPNSWNDLFNYLSNV 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           + F    I+ +GL I  DNS   YDRFRNRLI PI   +G+V+AFGGR+L  G+  KYLN
Sbjct: 179 EKFPSNLILASGLAISKDNSEKIYDRFRNRLIVPIHDMQGRVVAFGGRSL-DGQEPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ +F KGK L+ F  A + ++K              I+VEGY DV++L   G+ N V
Sbjct: 238 SPESEIFEKGKMLFAFEKASSNIRK----------RDKAIIVEGYFDVIALHSKGISNSV 287

Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352
           +SLGTAL +YQ+  L +   +  I+L FD D+ G+ A  + I  V    +        + 
Sbjct: 288 ASLGTALNKYQISQLCRCTDNKNIILNFDSDNAGVLATKRVIKEVESLSLHDQINLKILQ 347

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L+  +DPD F+  +    +  LI  S   +D    +  +++     +    +   L   +
Sbjct: 348 LNDFKDPDEFLNSHTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSENFQSVISSLVKLL 407

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           + I     R +Y Q + +RL +   +   +     R   K  R   +    ++       
Sbjct: 408 SKIPQSSTRTHYLQKVSERLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQP------ 461

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFL------- 522
                 +    E+ ++   ++ P +      E        ++   +Q LW  +       
Sbjct: 462 --NEISRREKNESEIIFYYLHCPDLRLFIRDEFLKREINVFNTKYIQNLWEAISTVEQNN 519

Query: 523 --FSDFVEQKYFLPEEIHQRLCERGFGELLK--------QLDRQVRDAGLWSATTEANIV 572
              +   E K    + + +         LL         +L  ++ D    +      + 
Sbjct: 520 LGLNYLDELKQSNSQTLQKEFSAIDLISLLTDYLALYNPELSNKINDFFNPNELFLTLLS 579

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +      L+L +++  L R +  IE 
Sbjct: 580 NPKVNLLGTLSLLEKYNSLKRCRHLIES 607


>gi|188581953|ref|YP_001925398.1| DNA primase [Methylobacterium populi BJ001]
 gi|179345451|gb|ACB80863.1| DNA primase [Methylobacterium populi BJ001]
          Length = 549

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 152/538 (28%), Positives = 259/538 (48%), Gaps = 46/538 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ +   +P+S ++G YV   R        ++ A  PF  E+TPSF  ND KGF
Sbjct: 3   RITHATIEAIKDRLPVSEVVGGYVQLKRAGR-----EWRALSPFARERTPSFFVNDQKGF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           ++CFS    G+ + F+  + G +F E+V+ LA  AG+ +       + E     +   I 
Sbjct: 58  WHCFSTGKHGNAIDFVMEMSGLTFPEAVEELAGRAGIEVTRDGITRETEASRAARGSAIE 117

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+  A DFF   L+ +   +   YL +RG+         +G+AP++  +L EHL  +G+S
Sbjct: 118 LLACAQDFFVRQLQASEAAQA--YLRKRGLRRRIASQLGIGWAPEAGRALLEHLADRGWS 175

Query: 180 EEKIIEAGLLIDGDNSATSYDRFR-NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            +  IEAG+    D+ +     F   R++FPIR+   +VI+FGGR +  G   KYLN  E
Sbjct: 176 TQDAIEAGVATSPDDPSVPVRDFYRGRIMFPIRNRVKEVISFGGRAMDGG-MPKYLNGRE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF KG+ LY+   A   + +          +   I++EGYMDV  + QAG++NVV+ +
Sbjct: 235 TALFDKGRVLYHMDRARQAISR----------NGCAIVLEGYMDVAQVAQAGIENVVAPM 284

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT   L  LW+++P +V   DGD+ G RAA + +D  L  +    R+ F +L  G D
Sbjct: 285 GTALTVEHLHALWRVAPVVVHIADGDEAGARAADRTLDTALPWVSGDRRIVFGILPTGVD 344

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD  +R  G  A + +I ++  + + LW +       + P++RA+LE  ++  +  + ++
Sbjct: 345 PDDLVRSAGPNALQAVIRQAQHMAERLWLKLRAETPGDGPEDRAKLETGIRATLAVVGEE 404

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            +R  ++  +  R ++L                         G ++  +  + ++ +L  
Sbjct: 405 TMRRAFTDELLRRTRRL-------------------------GQARPQLGPTALERRLRP 439

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
               REAAL++ +++HP  L    +    +++     Q L   L             E
Sbjct: 440 AIPAREAALVVAVLDHPEYLDASIERFCALKFAAPAAQTLQERLVRAAGTGTPPDLGE 497


>gi|308234833|ref|ZP_07665570.1| DNA primase [Gardnerella vaginalis ATCC 14018]
 gi|311114793|ref|YP_003986014.1| DNA primase [Gardnerella vaginalis ATCC 14019]
 gi|310946287|gb|ADP38991.1| DNA primase [Gardnerella vaginalis ATCC 14019]
          Length = 700

 Score =  316 bits (809), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 129/621 (20%), Positives = 231/621 (37%), Gaps = 74/621 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFHDEKTPSF      G +
Sbjct: 5   IVKEDVERVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTPSFSVRPGLGVW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE----KIQTDLI 118
           +CF C   GD   ++       F E+V+ LA    V +     +  K        +  LI
Sbjct: 61  HCFGCGAGGDVFKYVEQKENIDFREAVELLADRYHVEVHYDQSQAGKDSAHAGSKRARLI 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E A  FF   + +         L  R       E F  GYAP+S  +L  +L  KGF
Sbjct: 121 EANEEAQRFFVSQINSKEAAPARSLLAGRNFTQAQCERFGCGYAPNSWDTLVRYLSNKGF 180

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236
           + +++++AGL   G      YD FR RL +PIR S G+ + FG R L   +S+  KY+N+
Sbjct: 181 TRQELLDAGLARQGQR--GIYDYFRGRLTWPIRDSTGRTLGFGARKLYDDDSISAKYINT 238

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+T+L+ K + LY    A + + K             +++VEGY DV++   AGV   V+
Sbjct: 239 PDTVLYRKTQVLYGIDIAKSNIVKK----------RQVVIVEGYTDVMACHLAGVDTAVA 288

Query: 297 SLGTALTEYQLRLLWK----------------------LSPRIVLCFDGDDPGLRAAYKA 334
           + GTA      +++ +                      +S RIV  FDGD  G +AA  A
Sbjct: 289 TCGTAFGAEHAKIIRRLIADDSLGAIQLVGPVKVEGQKVSSRIVFTFDGDAAGQKAALHA 348

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
             L    L    +    +     DP       G  A   LI  + PL D +         
Sbjct: 349 FGLDSAFLT---QTFVAVADNNLDPCDLRIQRGDEAVRSLIARANPLYDFVIDTVIRKFD 405

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----- 449
            +    +      +   +  I+D+ L   Y++     +         E     R      
Sbjct: 406 TSFATGQMGAVKAVAPLVAQIRDRSLLDLYTRKAVRNIGVDLDVMRREVESNRRRLHVID 465

Query: 450 ------------------WKKNARHRDQKGPSQRLMQSSLVKG---KLSKKPSLREAALL 488
                             + + ++  ++      +++S+       K+     + E   +
Sbjct: 466 DDAYSKSYSSIVSADSRVFDQRSQSMNEAAIKTAMLRSAYKNQSYYKVDDSVFMCEQQFM 525

Query: 489 LTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
             L+  P     + + +L    +     + L+    +        + + +   +  +  G
Sbjct: 526 AVLMQSPLAFNSQLFAQLTLNNFITPVFRTLFQAFVAAGGLPTSNVSQGLWLHIITKAAG 585

Query: 548 ELLKQLDRQVRDAGLWSATTE 568
            +L+    ++    L  + ++
Sbjct: 586 PMLEGAINELSVMPLPLSLSK 606


>gi|198277659|ref|ZP_03210190.1| hypothetical protein BACPLE_03882 [Bacteroides plebeius DSM 17135]
 gi|198269356|gb|EDY93626.1| hypothetical protein BACPLE_03882 [Bacteroides plebeius DSM 17135]
          Length = 709

 Score =  316 bits (809), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 147/492 (29%), Positives = 237/492 (48%), Gaps = 26/492 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++ ++V   RR  N     Y   CPFH+EKTPSF  + SKG  
Sbjct: 2   IDQATIDRILDAAQIVDVVSEFVTLRRRGVN-----YIGLCPFHNEKTPSFSVSPSKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
            CFSC   G+ + F+      S+ E+++ LA    + +   +   E+K+    +  L  +
Sbjct: 57  KCFSCGKGGNVVHFIMEHEQLSYYEALKWLANKYHIEVKERELTDEEKQAHSLRESLFVV 116

Query: 121 IEVATDFFHHSLKNARDKR--LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A+++F   L N  D +     YL  RG     I+ F+LGY+ DS  +L    +QKG+
Sbjct: 117 NQFASEYFQDILYNHIDGQRIGMTYLRSRGFRDDIIKKFQLGYSTDSHDALARTAKQKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235
            EE +++ GL    D+  +  DRF  R+IFP+ +  G+V+AFGGR L   +K   +KY+N
Sbjct: 177 QEEFLVKTGLCYRKDDG-SLRDRFWGRVIFPVHTLSGKVVAFGGRVLSAATKNVQMKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK + LY  + A   + +  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESEIYHKSRELYGIYFAKQAIVRQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+RL+ + +  I + +DGD  G++A+ + ID+    L  G  +   LL  
Sbjct: 286 ASSGTALTSDQIRLIHRFTNNITVLYDGDGAGIKASIRGIDM---LLEEGMNIKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T ++  I E                +   P +RA L   +   I+ I
Sbjct: 343 GDDPDSFARKHNATDYQAYINEHEVDFIRFKTNLLMEEAGKDPIKRASLISSIVKSISVI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            D  +R  Y++     LQ   +  I   +      ++N     Q+   Q           
Sbjct: 403 PDSIVRSVYTRECSQLLQMEEKILIEAVNKLIEQAQENKYKEIQRKQRQATQDVQPAPPT 462

Query: 476 LSKKPSLREAAL 487
              +    E  +
Sbjct: 463 TYPETQPTEIPI 474


>gi|328948110|ref|YP_004365447.1| DNA primase [Treponema succinifaciens DSM 2489]
 gi|328448434|gb|AEB14150.1| DNA primase [Treponema succinifaciens DSM 2489]
          Length = 600

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 152/640 (23%), Positives = 276/640 (43%), Gaps = 55/640 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++     I +L+ +YV  ++R +N     +W CCPFH+EKTPSF  +  K FY
Sbjct: 5   IAKESIDEVAEKTDIVSLVSEYVPLEQRGSN-----WWGCCPFHNEKTPSFSVSQDKKFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDLI 118
           +CF C V G+   F+  +   SF+ESV+ LA  AGV L   +   +       KI+ +  
Sbjct: 60  HCFGCGVSGNVFDFVREMEKLSFVESVEFLAKKAGVQLSYSNGSAKSVDSSASKIKDEYK 119

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L       FH+ L      K    Y+ +RG+    +E FK+GY+P  R  L++ L +K 
Sbjct: 120 NLYTRVAGMFHYMLMETPAGKFALGYILKRGLSQEILEKFKIGYSPSDRKWLKQFLLKKN 179

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG--ESVKYLN 235
           +SE+ +  +GL          +    +RL+FPI    G V+A GGR L     +S KYLN
Sbjct: 180 YSEDFLNNSGLFSKNYPDCAFFS---DRLMFPIFDKDGDVVAMGGRFLRGDAQKSPKYLN 236

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S + I + KG  LY F  A + +++  +          +I  EGYMD ++  Q G+   V
Sbjct: 237 SGDLIQYKKGSTLYAFNFAKSSIREKHK----------VIFCEGYMDCIAYHQCGITWAV 286

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           + LGT+LT+ Q+ L+      I L FD D  G +A  +AI +          V  + LS 
Sbjct: 287 APLGTSLTDEQISLVKHFVEEIYLSFDSDGAGQKATKRAILMCR---KQDVAVKVIRLSG 343

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DP   +  +G       +  ++   D L  +  E    +TP  +++  +     I+ +
Sbjct: 344 GKDPAEIMLNFGAEYLTNEVNNAIFDSDYLLSKLQELYPKDTPMGKSKASLDFFEYIDSL 403

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +    +      +        +    +   Y    K + R R+     +    S  +K  
Sbjct: 404 QSDVQKDACLDQLCQTYGIEKEAARRD---YFNRDKVSYRFRNASTEQKNPADSEKIKVT 460

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +      A++  +    ++ Q+  + ++     ++  ++L+  +  +  +   F   
Sbjct: 461 AELQ------AVMTAVTEDVSLFQKMCECVSVDDLSDSYSKQLF-AVMQECQKNGSFSVS 513

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            I  R+ +  F +L+  ++   ++ G    + E+ I             Y +     R+K
Sbjct: 514 NILNRIDQENFRKLI--IENVSKNTGRIQESAESCI------------SYLKRNAYKRKK 559

Query: 596 EEIEKQIAQVTAK---GEAEKTAILISILHEVHIQIHQIE 632
             I ++I+ ++      +      L     E+  QI  ++
Sbjct: 560 MSIMEKISSLSRSILPEDKALLVELTKQKMELDFQIENLK 599


>gi|224025790|ref|ZP_03644156.1| hypothetical protein BACCOPRO_02532 [Bacteroides coprophilus DSM
           18228]
 gi|224019026|gb|EEF77024.1| hypothetical protein BACCOPRO_02532 [Bacteroides coprophilus DSM
           18228]
          Length = 735

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 141/462 (30%), Positives = 230/462 (49%), Gaps = 27/462 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++ ++V   RR  N     Y   CPFH+EKTPSF  + SKG  
Sbjct: 2   IDQATIDRILDAAQIVDVVSEFVTLRRRGVN-----YIGLCPFHNEKTPSFSVSPSKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
            CFSC   G+ + F+      ++ E+++ LA    + +   +   E+K+    +  L  +
Sbjct: 57  KCFSCGKGGNVVHFIMEHEQLTYYEALKWLARKYNIEIKERELTDEEKQAHSLRESLFVV 116

Query: 121 IEVATDFFHHSLKNARDKR--LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A ++F   L N  D +     YL  RG     I+ F+LGY+ DS  +L +   QKG+
Sbjct: 117 NQYAAEYFQDILYNNIDGQRIGMTYLRGRGFRDDIIKKFQLGYSTDSHDALAKATIQKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
             + +++ GL    D+  +  DRF  R+IFP+ +  G+V+AFGGR L+   K   +KY+N
Sbjct: 177 KADYLVKTGLCYRKDDG-SLRDRFWGRVIFPVHTLSGKVVAFGGRVLNAATKNVQMKYVN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++HK + LY  + A   + +  R            LVEGY DV+S+ Q+G++NVV
Sbjct: 236 SPESEIYHKSRELYGIYFAKQAIVRQDR----------CFLVEGYTDVISMHQSGIENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q+R++ + +  I + +DGD  G++A+ + ID+    L  G  V   LL  
Sbjct: 286 ASSGTALTAEQIRMIHRFTNNITVLYDGDGAGIKASIRGIDM---LLEEGMNVKVCLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T ++  I                  +   P +RA L   +   I+ I
Sbjct: 343 GDDPDSFARKHNATDYQAYINGHEVDFIRFKTDLLMEEAGKDPIKRASLISSIVKSISVI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            D  +R  Y +     L Q+ +K + E +       +  R +
Sbjct: 403 PDAIVRSVYIRECSQML-QMEEKILVEATAKLIEQARETRFK 443


>gi|251782160|ref|YP_002996462.1| DNA primase [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
 gi|242390789|dbj|BAH81248.1| DNA primase [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
          Length = 604

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 155/636 (24%), Positives = 266/636 (41%), Gaps = 50/636 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKEMISQIKNSVNIVDVIGEVVKLSRAGR-----HYLGLCPFHKEKTPSFNVIEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   GD   F+       F+ESVQ +A  AG+ L   P               L+
Sbjct: 66  FHCFGCGKSGDVFKFIEDYRQVPFLESVQIIAERAGIALKITPRQSGVSSPNANPHQVLM 125

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A  F+H  L      +    YL +RG+D + IE F +G APD    L + L +K 
Sbjct: 126 SLHEDAAKFYHAVLMTTTIGQEARQYLYQRGLDDNLIEHFNIGLAPDESDYLYQALSKK- 184

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKY 233
           + E ++  +GL    + S T YD FRNR++FP+   RG +IAF GR  +K +      KY
Sbjct: 185 YDESQLAASGLFNLSEQSNTIYDAFRNRIMFPLSDDRGNIIAFSGRIWTKNDLEKKQAKY 244

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            NS  T+LF+K    Y+   A   + K          +  + L+EG+MDV++  ++G +N
Sbjct: 245 KNSRGTVLFNKSYEFYHLDKAKPVIAK----------THEVFLMEGFMDVIAAYRSGHEN 294

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            ++S+GTALT   +  L +++ ++VL +DGDD G  A  K++DL+   ++       V +
Sbjct: 295 AIASMGTALTPEHVTHLKQITKKVVLTYDGDDAGQNAIAKSLDLLKDFVVE-----IVRI 349

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPD F++ +   AF  L+ +S       +    +  + +    +      +   I 
Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPDNMDNLQSQIAYVERIAPLIA 409

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  +  Y   + D L       + +     R   +  R      P  RL+  +L  
Sbjct: 410 QSPSITAQNSYINKVADLLPDFDYFQVEQSVNALRVQDRRRRQEAPVQPVSRLV--TLPV 467

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K     +  E  LL  L++H  +L E      D  +D    Q L+  L           
Sbjct: 468 TKSLTAVAKAEGHLLHRLLHHDYLLTEFRHR-KDFYFDTPTFQVLYEQLKKQG------- 519

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                 ++      E+ +++++        +   E    ++     +   L        R
Sbjct: 520 ------QITSYDLSEMPEEVNQAYYSILESNLPEEVAPGEIDDILAKRTRLLA-----ER 568

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
              +  KQ+ + + KG+ +    ++  L     ++ 
Sbjct: 569 DLHKQGKQVRESSNKGDHDLALEVLENLIAQKRKME 604


>gi|322411496|gb|EFY02404.1| DNA primase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 604

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 154/636 (24%), Positives = 264/636 (41%), Gaps = 50/636 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKEMISQIKNSVNIVDVIGEVVKLSRAGR-----HYLGLCPFHKEKTPSFNVIEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118
           ++CF C   GD   F+       F+ESVQ +A  AG+ L   P        K      L+
Sbjct: 66  FHCFGCGKSGDVFKFIEDYRQVPFLESVQIIAERAGIALEIPPRQSGSSSPKTNPHQVLM 125

Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            L E A  F+H  L      +    YL  RG+D + IE F +G +PD    L + L +K 
Sbjct: 126 SLHEDAAKFYHAVLMTTTIGQEARQYLYRRGLDDNLIEHFNIGLSPDESDYLYQALSKK- 184

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKY 233
           + E ++  +GL    + S T YD FRNR++FP+   RG +IAF GR  +K +      KY
Sbjct: 185 YDESQLAASGLFNLSEQSNTIYDAFRNRIMFPLSDDRGNIIAFSGRIWTKSDLEKKQAKY 244

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            NS  T+LF+K    Y+   A   + K          +  + L+EG+MDV++  ++G +N
Sbjct: 245 KNSRGTVLFNKSYEFYHLDKAKPVIAK----------THEVFLMEGFMDVIAAYRSGHEN 294

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            ++S+GTALT   +  L +++ ++VL +DGDD G  A  K++DL+   ++       V +
Sbjct: 295 AIASMGTALTPEHVTHLKQVTKKVVLTYDGDDAGQNAIAKSLDLLKDFVVE-----IVRI 349

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPD F++ +   AF  L+ +S       +    +  + +    +      +   I 
Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPDNMDNLQSQIAYVERIAPLIA 409

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  +  Y   + D L       + +     R   +         P  RL+  +L  
Sbjct: 410 QSPSITAQNSYINKVADLLPDFDYFQVEQSVNALRAQDRRRLQEAPVQPVSRLV--TLPV 467

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K     +  E  LL  L++H  +L E      D  +D    Q L+  L           
Sbjct: 468 TKSLTAVAKAEGHLLHRLLHHDYLLTEFRHR-KDFYFDTPTFQVLYEQLKKQG------- 519

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                 ++      E+ + +++        +   E    ++     +   L        R
Sbjct: 520 ------QITSYDLSEMPEDVNQAYYSILESNLPEEVAPGEIADILAKRTKLLA-----ER 568

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
              +  K++ + + KG+ E    ++  L     ++ 
Sbjct: 569 DLHKQSKKVRESSNKGDHELALEVLENLIAQKRKME 604


>gi|227872668|ref|ZP_03990998.1| possible DNA primase [Oribacterium sinus F0268]
 gi|227841482|gb|EEJ51782.1| possible DNA primase [Oribacterium sinus F0268]
          Length = 581

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 152/622 (24%), Positives = 259/622 (41%), Gaps = 55/622 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + ++++     I +LIGQYV   ++ +      Y+  CPFH EKTPSF  +  K 
Sbjct: 1   MYYGEEIVEEIRQRTDIVDLIGQYVHLKKKGS-----SYFGLCPFHGEKTPSFSVSPGKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIR 119
            +YCF C   GD + F+      SF+E++++LA  A V LP     + K +E ++  L+ 
Sbjct: 56  IFYCFGCGKAGDSIRFMMEYENLSFVEAIEQLAERANVTLPEKSSGVNKGEEDLRYKLLE 115

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           + + A  FF   L++ + K    YL +R +   +I  F LGYA   + +L +H +  G+ 
Sbjct: 116 INKNAALFFVKQLRSPKGKLGLQYLAKRALSGESITHFGLGYAVQEKDALYQHCKALGYE 175

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  + E+GL           D+F NR+IFPI     +VI FGGR +      KYLNSPET
Sbjct: 176 DAILQESGL--FTFKENGVRDKFFNRVIFPIMDLHHRVIGFGGRVM-GDGEPKYLNSPET 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LF K +NL+    A                 S++IL EGYMDV+S+ QAG    V++LG
Sbjct: 233 KLFDKSRNLFALNFARRS------------RESYLILCEGYMDVISMHQAGCIEAVAALG 280

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA TE Q  LL + +  ++LCFD D+ G +A  +AI +         +   + L   +DP
Sbjct: 281 TAFTEQQAALLKRFTSTVLLCFDSDNAGRKACKRAIPI---LREKEIQAKVISLKPYKDP 337

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN-HIKDQ 418
           D F++  GK A  + I  +        +      +   P E       + + +     D 
Sbjct: 338 DEFLKAEGKDALMERIHNAKNAFLWEVEELKSGFNLQDPGEMQGYMEAIASLLRDCFSDP 397

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                Y +A+        +  +          + +     Q    +   + +L       
Sbjct: 398 VELENYCKAVAREQLLSAENLLYLVQKGEEKSQLSFALSKQGRREENKREKAL------- 450

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E   L  L+     +    Q +          ++++  L     E K        
Sbjct: 451 -TDNLEEQFLSLLLQKEEWIAPVSQYIKAEDLREELCRQVFLSL----QEGKSV------ 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               +      L + ++  +   L+        ++ ++  +  L   ++      +   I
Sbjct: 500 ----QEIMDGFLGEEEKYQKCMALYHGDLYHLDLERQEEERMLLDFIRQM-----KLRGI 550

Query: 599 EKQIAQVTAKGEAEKTAILISI 620
           EK I++     + E+ + L   
Sbjct: 551 EKAISEAM---DGEELSRLFRE 569


>gi|330836588|ref|YP_004411229.1| DNA primase [Spirochaeta coccoides DSM 17374]
 gi|329748491|gb|AEC01847.1| DNA primase [Spirochaeta coccoides DSM 17374]
          Length = 602

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 146/633 (23%), Positives = 253/633 (39%), Gaps = 42/633 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ +   + IS ++  YV+   R      G +W  CPFH EKT SF   + KG 
Sbjct: 3   KISESVIEQIKSRLTISEVVSAYVNLTYRG-----GRHWGLCPFHHEKTASFSVLNEKGL 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           ++CF C   G    F+  +   +F ESV  LA  AGV L    P+ ++K      L  L 
Sbjct: 58  FHCFGCGKSGSMFDFVMEMDHLTFGESVSVLARKAGVELREETPEDKRKRTESEALQELY 117

Query: 122 EVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  T+ F + L+N+ R      YL+ RGI     E F LGYAP     L + L  K +S 
Sbjct: 118 DRLTNSFRYILQNSDRAAHARRYLENRGISLEIQEKFGLGYAPAPSQWLYDFLTDKHYSA 177

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +  +GL    +   + +    +RL+FPIR+ +G+ + FGGR L+   + KY+N+PET 
Sbjct: 178 SLLEASGLFSKRNERVSIFR---DRLMFPIRTWQGKTVGFGGRDLTGESTAKYINTPETA 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++ K   +Y  + AL+ L+          S    IL EGY DV+++ Q+G    V+ LGT
Sbjct: 235 IYSKRSVVYGLYEALSELK----------SRKHAILCEGYFDVMAMHQSGFTTAVAPLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T  Q + L +    I   FD D  G  A  KA+ +       G   N +LL   +D  
Sbjct: 285 AFTTEQCKQLHRYCDSISTLFDSDAAGQNATGKALVICQDM---GIENNVMLLDHAKDAA 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +   G  A  K++    P  + L           TP  ++ +  H+++ +     +  
Sbjct: 342 DVLEKNGSEALGKMLENKTPGFEYLVLSAINMYDVKTPKGKSAVFSHVRSYLEATDSEIE 401

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y   + + L       + +        + +A+   +K P    +    +    S   
Sbjct: 402 RQTYIHRLAEILHVDDASIVEDLH-----HRSSAQETRKKAPETSPVSIPNLARVSSDMF 456

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                 L+L L             +     +++    L++ L            E   Q 
Sbjct: 457 ------LMLCLATKREEFPVIRNRINVADLEDSLAVDLFTLLEDATRNDLGKTDEVFLQM 510

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L+    +            ++++  +           ++F    +  E+I  
Sbjct: 511 IDDERLKQLVAISFQSGAFGHNLQKGIDSSLDRI---------TLRKFEKKKKAMEDILG 561

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                T    + +   L+  + EV+ +I ++  
Sbjct: 562 FAENETPDENSSEIRRLVLDIQEVNQEIIRLRG 594


>gi|171464017|ref|YP_001798130.1| DNA primase [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171193555|gb|ACB44516.1| DNA primase [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 652

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 180/676 (26%), Positives = 291/676 (43%), Gaps = 85/676 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL  + I +++GQ+V   +   N     +   CPFH EK+ SF  + +K FY
Sbjct: 4   IPQSFIADLLNRVDIVDVVGQHVKLKKAGAN-----FQGLCPFHSEKSSSFSVSPTKQFY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120
           +CF C   G  +SFL    G  ++++++ LA  AG+ +P          +++    L  +
Sbjct: 59  HCFGCGAHGSAISFLMEYSGLGYVDAIEDLARSAGLDVPREERTANDVARQQQAMALSEV 118

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A D++   LK     R   YL  RG+     + + LGYAPD    L          E
Sbjct: 119 MSSAADWYRQQLKGN--TRAVEYLKGRGLTGEIAKRYALGYAPDGWQGLETVFGAYSNDE 176

Query: 181 EKI--IEAGLLIDGD-----NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
                +E+GLLI  +      S   YDRFR+R++FPIR+ +GQ I FGGR L +GE  KY
Sbjct: 177 VAKTLLESGLLIQSEQAEGSQSMKRYDRFRDRIMFPIRNPKGQTIGFGGRILDQGEP-KY 235

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET LF KG  LY  F A   ++             ++++ EGYMDV++L Q G  N
Sbjct: 236 LNSPETPLFSKGNTLYGLFEARQAIRAQ----------EYVLVCEGYMDVVALAQLGFPN 285

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V++LGTA T   +R+L + + ++V  FDGD  G RAA +A++  L  +     ++F+ L
Sbjct: 286 AVATLGTACTANHVRMLLRQTDKVVFSFDGDSAGQRAAQRALEACLPLMSDDKEIHFLFL 345

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPDS++R YG  AFEK+I E+  +    +K  +E     TP+ RA      K  + 
Sbjct: 346 PTEHDPDSYVRAYGAPAFEKVIKEATSISSFFFKVVSEGHELTTPEGRAHTHHAAKPLLL 405

Query: 414 HIKDQKLRYYYSQAIRDR----------------------------LQQLFQKYITEHSG 445
            +    LR    + +  R                            +Q        + + 
Sbjct: 406 SMPPIALRTQILRELAIRTNTTPAELEAFCGLTVAPAPVRQTTYQPMQARTPGGHNQSAF 465

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI-----LQE 500
            G   ++ A  +  KG ++R+   ++   K      L E  +L  +I  P +       +
Sbjct: 466 SGIGNRQGAPWQASKGSAKRVATQNIEPPK--APTDLAE-QMLRVIIQFPHLGKALDANK 522

Query: 501 QYQELADIRYDNNELQKLWSFLFSDF-------VEQKYFLP------EEIHQRLCERGFG 547
           +   L      + +   L     +          E                 +L      
Sbjct: 523 RALALKAAEQRSEKAHALMKDFLAQCDLVELIPGEGNKPATVGAGAFAMFQDQLSRSELA 582

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            L + L  +V  + L     E    D+   +++   ++     L ++  EI ++IA  TA
Sbjct: 583 PLYEVLRNRVMGSDLEI---EGAAADLDGAFKKLELIH-----LKQEMTEIAQKIAGGTA 634

Query: 608 -KGEAEKTAILISILH 622
            + +  +   L   L 
Sbjct: 635 TEQDKARYRELGEKLK 650


>gi|124007963|ref|ZP_01692663.1| DNA primase [Microscilla marina ATCC 23134]
 gi|123986547|gb|EAY26346.1| DNA primase [Microscilla marina ATCC 23134]
          Length = 696

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 166/709 (23%), Positives = 288/709 (40%), Gaps = 100/709 (14%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + I+ +   + I +++G +V   ++  N     +WA  PF +EKTPSF  + +KG
Sbjct: 1   MRISEETIEQIRDVVDIVDVVGDFVSLKKKGGN-----WWAHSPFTNEKTPSFSVSPAKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV---VDPKIEKKEKIQTDL 117
            + CFS    GD ++F+  +   S+ E+++ LA    + L       P+   ++  +  L
Sbjct: 56  IFKCFSSGKGGDAITFVMEVEKLSYPEALRYLAQKYNIELDEDEPPTPEEVARQNERESL 115

Query: 118 IRLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           +  +E A+  +  +L    + +     Y  ERG     IE F+LGY+ DS  +  +  + 
Sbjct: 116 LIALEYASKHYEKNLHQTPEGQAIGLAYFKERGFSVKTIETFELGYSLDSWEAFTKQAQA 175

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYL 234
             +S   +++AGL ID +     +DRFR+R+IFPI +  G+VIAFG R L   +   KYL
Sbjct: 176 DQYSLPILVKAGLTIDKNG--RYFDRFRDRVIFPIHNLAGKVIAFGARILKNDKKQAKYL 233

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPE+ ++HK K LY  + A   L+                LVEGY DV+SL QAG++NV
Sbjct: 234 NSPESPVYHKSKVLYGLYQAKKSLRD-----------DDCYLVEGYTDVISLHQAGIENV 282

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S GT+LT  Q+RL+ + +P I + +DGD  G++AA + IDLVL     G  V  VL  
Sbjct: 283 VASSGTSLTSDQIRLIRRFTPNITVLYDGDAAGIKAAIRGIDLVLEE---GMNVKVVLFP 339

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLV-----DMLWKRETENRSFNTPDERAELEIHLK 409
            G+DPDS+++  G TAF+  I ++          +  +   +  S + P +RAE+   + 
Sbjct: 340 DGDDPDSYVKKVGGTAFKDFINQNSQDFITFKARLYMEETKQAASGDQPFKRAEMIREVV 399

Query: 410 NCINHIKDQKLRYYYSQAIRDRL------------QQLFQKYITEHSGYGRYWKKNARHR 457
             I  I D   R  + +     L            + L Q          R  KK AR +
Sbjct: 400 ESITKIPDAIKRSVFYRECSALLEVDEAVLIDEGNKILKQDAKKRQDRQFREQKKQAREQ 459

Query: 458 DQKGPSQRL--------------------------------------------MQSSLVK 473
            ++                                                   +    +
Sbjct: 460 KRQQQLPPPADFPFDLPPPPDGEFYIQDEGLIQVDPEMTPPPLIGEGDDTDVATEPITPQ 519

Query: 474 GKLSKKPSLREAALLLTLINH--------PAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                  + +E   +  L+N+          +      E+++++++     K+       
Sbjct: 520 DPFKSPIAFQEKEHIRILLNYANHDLKEDGKLCAFLLDEISEVKFETPIYAKMLEIFREK 579

Query: 526 FVEQKYFLPEEIHQRLCERGFG----ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
             E      +   Q+           +L+ +      +             D+       
Sbjct: 580 LKEDNIITADYFIQQHENEEMKKAAVDLISERFEISENWVERHGIFVPKDEDILDSMVVK 639

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             L  + R + +   E   ++         E   +L   L  +  +I +
Sbjct: 640 AILRLKLRHVRKMLTENSLKMNDAQTIEAQEAVMMLHMELKSLEKEIAE 688


>gi|23013684|ref|ZP_00053552.1| COG0358: DNA primase (bacterial type) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 339

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 134/331 (40%), Positives = 191/331 (57%), Gaps = 17/331 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +P  F+ +L   IP+++++G+ V   R+       ++   CPFH+EKTPSF  N+ KG
Sbjct: 1   MAFPPQFLDELRARIPVTSVVGRRVKLVRKGR-----EHQGLCPFHNEKTPSFTVNEDKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F++CF C   GD + F       SF E+V++LAA AG+ +P   P+   +E+ +  L   
Sbjct: 56  FFHCFGCGAHGDAIGFEMRAGHLSFTEAVEKLAAEAGIEVPKASPEERVREQRRASLHDA 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF   LK    +    YL  RG+    I  F+LG+APDSR +L+  L  K   E
Sbjct: 116 LEAACGFFEKHLKGPAGREGFAYLKNRGLSDETIARFRLGFAPDSREALKSALMSKECPE 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +IEAGLL   ++ A+ +D FR R++FPI   RG+VI FG RTL      KYLNSP+T 
Sbjct: 176 SLLIEAGLLKKPESGAS-FDYFRGRVMFPITDRRGRVIGFGARTL-GDGQPKYLNSPDTP 233

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKG+ LY    A    ++  R          +++VEGYMDV+++ QAG    V+ LGT
Sbjct: 234 LFHKGQTLYGLAHAREMARELNR----------VVVVEGYMDVIAMHQAGFAYAVAPLGT 283

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAA 331
           A+TE Q+  LW+L+P  +LC DGD  G RA 
Sbjct: 284 AVTEAQIEELWRLAPEPILCLDGDAAGQRAM 314


>gi|315640586|ref|ZP_07895692.1| DNA primase [Enterococcus italicus DSM 15952]
 gi|315483614|gb|EFU74104.1| DNA primase [Enterococcus italicus DSM 15952]
          Length = 611

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 147/638 (23%), Positives = 269/638 (42%), Gaps = 41/638 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   +  +     I  +IGQYV   +   N     Y   CPFH+EKTPSF   + K  
Sbjct: 8   KIPSTVVDSIREQANIVEIIGQYVQLKKAGKN-----YLGLCPFHNEKTPSFSVAEDKQI 62

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           ++CF C   G+   F+  +   SF E+V ++A +  +P+       +      + L+ L 
Sbjct: 63  FHCFGCGKGGNVFRFIEEIDHLSFAEAVLKVADLEQIPIDHALRVSQPGTVESSPLLVLH 122

Query: 122 EVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + A  F+HH L      ++   YL +RG+    I+ F++G+AP  R  L    R +  + 
Sbjct: 123 DKAMQFYHHILVNTEVGQQPLDYLHQRGLTDELIQEFQIGFAPPQRTFLERIFRNESLAP 182

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-----GESVKYLN 235
           +    +GL ++  +  +  DRF  R++FPIR+ +G+ IAF GR          +  KYLN
Sbjct: 183 DAFPNSGLFVEK-DDHSLIDRFYQRIMFPIRNPQGKTIAFSGRWFEFENEEISDQPKYLN 241

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F+K   L+N   A   ++K           + I+L EG+MDV++  QAGV N V
Sbjct: 242 SPETSIFNKRDVLFNLDKAKATIRK----------ENTIVLFEGFMDVIAAWQAGVTNGV 291

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GT+LTE Q+R + +L+ +++ C+DGD  G  A  + + L+  H     ++  +LL  
Sbjct: 292 ASMGTSLTEQQIRQMEQLAAQLIFCYDGDQAGQNATMRGVQLLREHSR--LKLTTLLLPE 349

Query: 356 GEDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
             DPD +IR YG  +F + +  + L                    E+      L   + +
Sbjct: 350 KLDPDEYIRKYGGDSFVQAMKHQQLTPFLFTMDYLATQFHLENEQEKLSYLEQLLKELTY 409

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           +     +  Y   I ++        + +     R  +K    +   G      Q S+ + 
Sbjct: 410 VDSILEQDGYLTKIANQFDIQRATLVQQLQVVKRESRKKMAPQSHTGAQSVPSQRSIQQR 469

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K   +    E  LL  + N      +  Q+  D  +  +  Q+L+  L +     + F  
Sbjct: 470 K--TQLQKAEELLLFRMTNDSLYRTKFKQQ--DGVFPEDHYQELFVLLDTYLDVNETFDF 525

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            +    L +     L+  +                   +  +     L    +     +Q
Sbjct: 526 AKFLDFLQKDSLKTLMIAIGSANLS------------EEGSEQEFHDLMRQLKMAAYQQQ 573

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             + ++++   +   +A+    L   + ++  ++  ++
Sbjct: 574 INQKQQELRHASNVSDAQLQVTLAMEIIDLTRRLKNVD 611


>gi|322433934|ref|YP_004216146.1| DNA primase [Acidobacterium sp. MP5ACTX9]
 gi|321161661|gb|ADW67366.1| DNA primase [Acidobacterium sp. MP5ACTX9]
          Length = 593

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 169/640 (26%), Positives = 275/640 (42%), Gaps = 64/640 (10%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            +F + +   + I  +IG+YV   +        +Y   CPFH EKT SF  N +  ++YC
Sbjct: 3   DNFAQTVKTQVDIVKIIGEYVKLRKTGAQ----NYSGLCPFHKEKTGSFSVNAAHNYFYC 58

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIRLI 121
           F CH KGD  +F+  L G SF E+V+ +AA AG+PLP      P+  ++  I+  L+ L 
Sbjct: 59  FGCHEKGDVFTFVMKLDGLSFPEAVRAVAAKAGIPLPKREFSSPEDAQEAGIRKKLVDLH 118

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E AT +F   LK+        YL  RG+ +  I  F++G+APD    +RE ++     + 
Sbjct: 119 EGATQYFEAMLKSPGAAGAREYLSSRGVTAETIAKFRMGFAPDDFNDMREKMKPHFGDDV 178

Query: 182 -----KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV----- 231
                    +    DG  +   Y RFR R++FPI + +G+ IAF  R L   +       
Sbjct: 179 LRASGLFNSSEKDDDGHPTGQLYARFRKRIMFPIANEQGKTIAFTARALEAVDDKGRPIA 238

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KY+NSPET L+ KG  L+N   A   ++          +  F +LVEG MD +S+  AG+
Sbjct: 239 KYMNSPETPLYTKGNVLFNLDKAKADMR----------AHDFALLVEGQMDCISVYMAGI 288

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           +NV+++ GTA TE Q+RLL + + R+V+ FD D  G  AA K+I L       G  V  +
Sbjct: 289 KNVIATSGTAFTEMQVRLLSRFTKRVVVNFDPDQAGATAAEKSIAL---LTEEGFEVKVI 345

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
            L  G DPD F+R  G  A+   +  +    + L  R  +     T D + +    L   
Sbjct: 346 SLEGGLDPDRFVRENGIQAYMGALRTAKRQSEYLIDRAMQQFPARTADAKVQAMNFLLPH 405

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I  +  +  R  ++     +L         E                         +   
Sbjct: 406 IRRMPSRIHRDEFAADAAQKLGIDSALMRQELKQAAAQ------------------KLES 447

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL-WSFLFSDFVEQK 530
           VK   ++  +  E  LL  L+  P     + +    +       + +  + LF       
Sbjct: 448 VKAHRAEPANETERVLLQALVR-PETDAARVRAANGLADHPEWYEGMGAAALFDTLAHG- 505

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
              PE       +     +L ++        L S   E ++V++ +     LA    FR 
Sbjct: 506 -VAPENPIDAAQDDASRSMLAEV--------LSSGPGERSLVELVEDAFHTLA----FRH 552

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           L R++ E+   +A+   +G+      L+    +V   + +
Sbjct: 553 LERRQRELRMSMAEAQRRGDEAMVETLMMEKVKVDRALRE 592


>gi|302338589|ref|YP_003803795.1| DNA primase [Spirochaeta smaragdinae DSM 11293]
 gi|301635774|gb|ADK81201.1| DNA primase [Spirochaeta smaragdinae DSM 11293]
          Length = 593

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 157/551 (28%), Positives = 255/551 (46%), Gaps = 34/551 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P   ++++  ++ I  ++  Y+  +++ +      YW  CPFH EKTPSF   + + 
Sbjct: 1   MRIPETILQEINRNLSIVEVVSDYLTLEKKGS-----RYWGLCPFHGEKTPSFSVTEDEN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            +YCF CH  G   +F+  + G SF+E+V+RLA  AGV LP  D +    +K    L +L
Sbjct: 56  LFYCFGCHKGGSIFTFVMEMEGISFVEAVRRLAEKAGVSLPDTD-QGFVPDKKSDALEQL 114

Query: 121 IEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
                  FH+ L  + + +    YL ERGI+   IE F+LGY P  R  L   L  K +S
Sbjct: 115 YARLVKTFHYFLMESEKGRNAQTYLQERGIERQTIEAFELGYVPADRRWLYRFLSAKNYS 174

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ + E+GL        + +    +RL+FPI + RG+ +AFGGR L  GE  KY+NSPET
Sbjct: 175 KDFLAESGLFSSKYPDVSLFS---DRLMFPIYNHRGKAVAFGGRKLGSGEP-KYINSPET 230

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            L+ K + L+     L  +++  R            +VEGY DVL++ Q+G    V+ LG
Sbjct: 231 ALYKKREILFGLSKVLPVIRQKKRA----------YVVEGYFDVLAMYQSGAGGAVAPLG 280

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T  Q RLL +    +VL FDGD  G+ AA K+I +       G   + V L  G DP
Sbjct: 281 TAFTAEQGRLLKRYVNEVVLLFDGDSAGIAAARKSIPV---IETAGLEGSVVELPGGLDP 337

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              ++  G+ +  K I  S+   + L K   + +S   P    E+   +   I  I    
Sbjct: 338 ADMLKKEGQDSLIKSIKYSINSFEYLVKSALKEKSARQPGGEREVVAAVAPYITTIDSTV 397

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    + + D L+      + +    GR  +K     D K   +    S +++      
Sbjct: 398 KREGCVRYLSDTLRIDASSILADLEKIGR--RKEMERGDDKREERVASDSGIIRIGS--- 452

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  L+L ++ + A        +     +++  ++++  L   +   +    E + Q
Sbjct: 453 ----ELFLMLAVVVNRASFAYVRSTIGVDDLEDSFAREIYIALEEAYRNGEE-SLESLIQ 507

Query: 540 RLCERGFGELL 550
           RL  +    L+
Sbjct: 508 RLDRQELKNLV 518


>gi|227431670|ref|ZP_03913703.1| DNA primase DnaG [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352573|gb|EEJ42766.1| DNA primase DnaG [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 623

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 145/647 (22%), Positives = 258/647 (39%), Gaps = 49/647 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI ++   + I ++IGQY    ++        +   CPFHD++ PS    ++K  
Sbjct: 7   RIPQAFIDNVRSKVNIVDVIGQYTQLVKKGRQ-----WTGSCPFHDDRHPSLFVEENKQV 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIR 119
           + CFSC   G   SF+    G S+ E++  LA    +P+          + +     + +
Sbjct: 62  FNCFSCGRSGSVFSFIMEKEGYSYPEAILSLAESVDIPIDSSISANNGNQIDGTTQAIYQ 121

Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           L   A   + H+L N         Y  D+R +    I+ F +G+ PD    L  + ++K 
Sbjct: 122 LHTDAQRLYQHTLLNTISGEQALAYLHDKRQLSDEIIKEFGIGFVPDD-NLLLSYAKEKN 180

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            S E ++ + L I    S    DRF  R+++PI++ RGQV+ F GR+L    S+KY+NSP
Sbjct: 181 LSHEILMASELFITNSVSGDMRDRFSGRIVWPIKTERGQVVGFSGRSLDAENSIKYMNSP 240

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+  F KG+ LYN   A N ++           +   ++ EG+MDV+S   A  +  V++
Sbjct: 241 ESPFFTKGRILYNLDRAKNVIR----------QTGTAMIFEGFMDVISAHMADEKVGVAT 290

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GTALT   +R L +++ RI+L +D D+ G  AA ++I+L   +      +  V L    
Sbjct: 291 MGTALTPDHVRQLSRIAKRILLVYDSDEAGQNAARRSIELFKNNAK-DIEIGVVHLPDLL 349

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD      G    +K + +S+            N    +   +    +H    I +   
Sbjct: 350 DPDEVRIQRGLQVLKKSLNQSILTPIEFLVNAARNGKNLSNQAQYLTFLHEVMQILYTGT 409

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------------DQKGPSQR 465
              +      I +      Q    +     +  K    H+              K P   
Sbjct: 410 PVEQDIQLTRIANEFGTSKQALQAQLQQTKQSVKVQNSHQSVSQLSHVASDFSPKAPEYE 469

Query: 466 LM-QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                   + +   K  L E AL++ +I  P +L+      A   + + E Q L   L  
Sbjct: 470 FGFPVEPNRYQKISKVELAERALIMAMIKDPYMLERVKST-AGFAFVHPEYQ-LLMMLTE 527

Query: 525 DFVEQ--KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            +       F   +    + +    + +  +D    D  +                Q  L
Sbjct: 528 IYQRDHLGTFDIAQFMDFIQKPNLNQKIMAIDHSFGDIKVE-----------NDAVQDYL 576

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +      +S + +E+++ I     + +  K   L + L  +  + H
Sbjct: 577 RIIMEEAPVSNRVQELKQLIEIAKQQHDDAKLVQLSTELINIKKRQH 623


>gi|227538928|ref|ZP_03968977.1| DNA primase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241131|gb|EEI91146.1| DNA primase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 683

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 168/668 (25%), Positives = 283/668 (42%), Gaps = 64/668 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I  +L    I  ++G +VD  +R T          CPFH+EKTPSFH + +KG Y
Sbjct: 24  IKKETIDKVLDTARIEEVVGDFVDLKKRGT-----SLIGNCPFHNEKTPSFHVSVAKGIY 78

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120
            CF C   GD L F+  L   S+ E+++ LA    + +      P     +  +  L  L
Sbjct: 79  KCFGCGAGGDALKFVMDLEKYSYPEAIRYLANKYHIDVEEQERSPAQMAAQDKRESLYVL 138

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A  FF  ++      +     Y  ERG     I+ F+LGY+PD   +L E  +  GF
Sbjct: 139 SQWAGKFFKDNMWQTDMGQSIGLAYFKERGYREDIIKKFELGYSPDQWTALVEAAKTAGF 198

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
            EE + E GL I  D+  + YDRFR R++FPI++  G+VI FGGRTL   +S  KY+NSP
Sbjct: 199 QEEYLKEIGLTIQRDDG-SMYDRFRGRVMFPIQNLTGRVIGFGGRTLKTEKSVPKYVNSP 257

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK   LY    A   +            +    LVEGY DVLS+ QAGV+NVVSS
Sbjct: 258 ESEIYHKSDVLYGLNFAKKAI----------VDADNCYLVEGYADVLSVHQAGVENVVSS 307

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GT+LT  Q+RL+ + +  + + +DGD  G++A+ +  D+    L  G  V  +L   G 
Sbjct: 308 SGTSLTSGQIRLISRFTKNVTILYDGDTAGIKASLRGTDM---LLEEGLNVKILLFPDGN 364

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS+++ +G  AF+K I +                + N P +RA++   +   I  I D
Sbjct: 365 DPDSYVQKFGSDAFKKYIADHQEDFIFFKTNILLKDAENDPIKRADVIRDVVESIALIPD 424

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG---------------P 462
           +     + +   + L    +  ++E +       K+A  ++Q+                P
Sbjct: 425 EIKVAVFIRQCSNLLDIEERVLLSELNNIRVKKAKDADKKNQRNLSASSSPFSPSEGDGP 484

Query: 463 SQRLMQSSLVKGKLSKKPS-------LREAALLLTLINHPAILQEQYQE----------- 504
                 +   +G  + +P        L+E  ++  L+N+   L     +           
Sbjct: 485 PADFFMTDEERGGPAPEPEHKITPEILQEREIIRILLNYGDYLATWEGDGDIPIAPLLLG 544

Query: 505 -LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
            + D+ +++     + S         +    ++             +  +      +  W
Sbjct: 545 SIDDVEFEDKPSAYILSVYKEYAERFEIPQAKQFFSHEDRLVSDLAITCVASPYNLSPNW 604

Query: 564 SATTEA-----NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
           +              ++    QA+   K+ ++ S     I +++     +   E      
Sbjct: 605 NDDKRKIYVTQEYELLKNLVIQAIYRIKKRKVESEMLR-IREELRTEQDQANLEILLSKY 663

Query: 619 SILHEVHI 626
             L E   
Sbjct: 664 QKLKEAER 671


>gi|161870398|ref|YP_001599570.1| DNA primase [Neisseria meningitidis 053442]
 gi|161595951|gb|ABX73611.1| DNA primase [Neisseria meningitidis 053442]
          Length = 557

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 170/571 (29%), Positives = 275/571 (48%), Gaps = 37/571 (6%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH EKTPSF  + +K FY+CFSC   G  + F+    G SF E+VQ LA   G+ 
Sbjct: 1   MACCPFHKEKTPSFSVSPTKQFYHCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMI 60

Query: 100 LPVVDPKI------EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHA 153
           +P V  +        +++K Q  L      A DF+   L+   +     YLD+RG+ +  
Sbjct: 61  VPKVRGQNDNPEVRAERKKKQQTLEETTAAAADFYAQQLR--FNPTAKAYLDKRGLSAEV 118

Query: 154 IEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS 213
           I  + LGYAPD    L +    + +    +++ G++ID  N    YDRFR+R++FPIR+ 
Sbjct: 119 IAHYGLGYAPDGWQPLAQVF--QPYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNP 174

Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273
           RGQVI FGGR L      KYLNSP+T LF KGKNLY  +     +++  R          
Sbjct: 175 RGQVIGFGGRVL-DDSKPKYLNSPDTPLFDKGKNLYGLYEGRAAVKEVGR---------- 223

Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYK 333
           I++VEGYMDV++L Q GV   V++LGTA T   +++L + +  I  CFDGD  G +AA++
Sbjct: 224 ILVVEGYMDVVALAQFGVGYGVAALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWR 283

Query: 334 AIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETEN 392
           A++  L  L     ++F+ L    DPDS+IR YGK  FE  L+ +S PL +  W+  T+ 
Sbjct: 284 ALENALPQLKDDKSLHFLFLPEEHDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLTDG 343

Query: 393 RSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452
              NT + +AEL       +  I    L Y   Q + + +                  K+
Sbjct: 344 IHLNTQEGKAELVKTSSPLLAQITAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKR 401

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
           + + ++ K P   + Q  +        P+L +  +   LIN P        +L D    +
Sbjct: 402 HVKQKNYKLPPISVKQPVM--------PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALD 450

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            +   L +   +           ++ + +    + E + ++ R    +       E +  
Sbjct: 451 GDFACLANLAETIKNHPSVPATAQVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCE 510

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           + + G ++ L   K  ++ + +++ ++  + 
Sbjct: 511 NFQIGIKKLLNELKYSQIETLKQKSLQSGLN 541


>gi|168335372|ref|ZP_02693466.1| DNA primase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 579

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 151/527 (28%), Positives = 248/527 (47%), Gaps = 40/527 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +  DFI+ +  +I I +LI +Y +  ++        Y   CPFH+EKTPSF  ++ K 
Sbjct: 1   MYFAEDFIEKIRTYIDIVSLISEYTNLVKKGA----SSYIGKCPFHNEKTPSFVVSEDKQ 56

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDL 117
            YYCF C V G+ ++F+      SF E+++ LA  A +PL   + +I    +    +  +
Sbjct: 57  MYYCFGCGVGGNVITFMMEKENLSFGEAIESLAIRANIPLEYDNSRINNNREAFFKKDVI 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             L + A  F++++L     + +  YL +RGI+  +I++F LG++P+S  +L ++LR +G
Sbjct: 117 FDLYKKAARFYYYNLTRNTPEYVRQYLVDRGINKDSIKIFGLGFSPNSFNALYKYLRSEG 176

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
            + E ++E+GL +   NS   YDRF NRL+FPI S   +VIAFGGR     E+ KYLNS 
Sbjct: 177 VTNELLVESGLCVLNHNSGLIYDRFVNRLMFPIFSPTKKVIAFGGRVF-GNENPKYLNSS 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E ++FHK  NLY    A               +  + ILVEGYMDV+++ + G  N V+S
Sbjct: 236 ENLIFHKSNNLYGLNLAK------------MKNHEYYILVEGYMDVIAMHREGFTNTVAS 283

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA TE Q +LL + +  IV+ +D D+ G +A  KA  +       G  V  + L+  +
Sbjct: 284 LGTAFTESQAKLLKRYTDNIVIIYDSDNAGQKATLKASKI---LRDEGFSVKILELNGAK 340

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD F++ YG    +  I  +   +     +       N   E+ +    + + I ++++
Sbjct: 341 DPDEFLKKYGNEKLQNAITVANSDIWYKITKIQMLYDLNNLPEKIKFLEQISSIIANLQN 400

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              +  Y   I  R          E        K+N    +       +           
Sbjct: 401 SIEQQLYIDEISTRFNVNKSAIEIEIKKRIVNTKENKIVYENHSKKSDI----------- 449

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 E  LL  L + P I     + +    +     + +   L +
Sbjct: 450 ------EVDLLSVLYHTPTIYDSISEYVFPELFTEGVKRNIAISLIN 490


>gi|329116379|ref|ZP_08245096.1| DNA primase [Streptococcus parauberis NCFD 2020]
 gi|326906784|gb|EGE53698.1| DNA primase [Streptococcus parauberis NCFD 2020]
          Length = 603

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 154/633 (24%), Positives = 262/633 (41%), Gaps = 49/633 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            ++ I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F++
Sbjct: 13  DKEMISQIKNSLNIVDVIGEVVSLSRSGR-----HYLGLCPFHKEKTPSFNVIEDRQFFH 67

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIRLI 121
           CF C   GD   F+       F+ESV+ LA  AG+ + +   +     +      LI + 
Sbjct: 68  CFGCGKSGDVFKFVEEYRQVPFLESVEILAEKAGMAVNIASQRQDYSPRVSAHQQLIAIH 127

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           E A  F+H  L      +    YL  RG+    +E F +G APD    L + L +K +SE
Sbjct: 128 EDALKFYHAVLMTTTVGQNARNYLYNRGMTDELLEHFNIGLAPDESNYLFQSLSKK-YSE 186

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES----VKYLNS 236
           E++  +GL    + S T YD FRNR++FP+   RG  IAF GR  ++ +      KY NS
Sbjct: 187 EELAASGLFNLSEQSNTIYDAFRNRIMFPLTDERGSTIAFSGRIWTEKDQAAKIAKYKNS 246

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
             T+LF+K    Y+   A   + K          +  + L+EG+MDV++  +AG +N ++
Sbjct: 247 RATVLFNKSFEFYHLDKAKPVISK----------THEVFLMEGFMDVIAAYRAGFENAIA 296

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           S+GTALT+  +  L KL+ +IV+ +DGD  G  A  K++DL+    +       V +   
Sbjct: 297 SMGTALTQEHVNHLKKLTKKIVITYDGDSAGQNAIAKSLDLLKEFQVE-----IVRIPNQ 351

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD FI+   +     L+  S       +       + +    +      +   I    
Sbjct: 352 MDPDEFIQKNSEEELANLLSHSRISSTEFFIDYFLPENMDNLQSQIAYVEKIAKIIAADP 411

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               +  Y   + D L       + +     R   +  R          L+  +L   K 
Sbjct: 412 SITAQNSYINRVSDLLPDFDYLQVEQSVNSYRLQDRQERQGQIVKSESTLV--TLPISKS 469

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL  +I++  +L E   +  +  +D   L++L+  L     E       +
Sbjct: 470 ITALVRTENHLLHRIIHNDYLLNEFRTK-ENFYFDTPSLEELYQ-LLKTNGEISPLDLSQ 527

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + Q + +  +  L + L              E    ++    Q+   L K      R   
Sbjct: 528 LSQEVTQAYYRVLEESL------------PVEVAPGEIDDLLQKRQRLLK-----ERDIH 570

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +  KQ+ + + KG+ +    ++  L      + 
Sbjct: 571 KQGKQVRESSNKGDHQLALEVLENLIAQKRNME 603


>gi|300770452|ref|ZP_07080331.1| DNA primase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762928|gb|EFK59745.1| DNA primase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 683

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 167/668 (25%), Positives = 282/668 (42%), Gaps = 64/668 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I  +L    I  ++G +VD  +R T          CPFH+EKTPSFH + +KG Y
Sbjct: 24  IKKETIDKVLDTARIEEVVGDFVDLKKRGT-----SLIGNCPFHNEKTPSFHVSVAKGIY 78

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120
            CF C   GD L F+  L   S+ E+++ LA    + +      P     +  +  L  L
Sbjct: 79  KCFGCGAGGDALKFVMDLEKYSYPEAIRYLANKYHIDVEEQERSPAQMAAQDKRESLYVL 138

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A  FF  ++      +     Y  ERG     I+ F+LGY+PD   +L E  +  GF
Sbjct: 139 SQWAGKFFKDNMWQTDMGQSIGLAYFRERGYREDIIKKFELGYSPDQWTALVEAAKTAGF 198

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
            EE + E GL I  D+  + YDRFR R++FPI++  G+VI FGGRTL   +S  KY+NSP
Sbjct: 199 QEEYLKEIGLTIQRDDG-SMYDRFRGRVMFPIQNLTGRVIGFGGRTLKTEKSVPKYVNSP 257

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK   LY    A   +            +    LVEGY DVLS+ QAGV+NVVSS
Sbjct: 258 ESEIYHKSDVLYGLNFAKKAI----------VDADNCYLVEGYADVLSVHQAGVENVVSS 307

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GT+LT  Q+RL+ + +  + + +DGD  G++A+ +  D+    L  G  V  +L   G 
Sbjct: 308 SGTSLTSGQIRLISRFTKNVTILYDGDTAGIKASLRGTDM---LLEEGLNVKILLFPDGN 364

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS+++ +G  AF+K I +                + N P +RA++   +   I  I D
Sbjct: 365 DPDSYVQKFGSDAFKKYIADHQEDFIFFKTNILLKDAENDPIKRADVIRDVVESIALIPD 424

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG---------------P 462
           +     + +   + L    +  ++E +       K+A  ++Q+                P
Sbjct: 425 EIKVAVFIRQCSNLLDIEERVLLSELNNIRVKKAKDADKKNQRNPSVSSPPFSPSEGDGP 484

Query: 463 SQRLMQSSLVKGKLSKKPS-------LREAALLLTLINHPAILQEQYQE----------- 504
                 +   +G  + +P        L+E  ++  L+N+   L     +           
Sbjct: 485 PADFFMTDEERGGPAPEPEHKITPEILQEREIIRILLNYGDYLATWEGDGDIPIAPLLLG 544

Query: 505 -LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
            + D+ +++     +           +    ++             +  +      +  W
Sbjct: 545 SIDDVEFEDKPSAYILGVYKEYAERFEIPQAKQFFSHEDRLVSDLAITCVASPYNLSPNW 604

Query: 564 SATTEA-----NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
           +              ++    QA+   K+ ++ S     I +++     +   E      
Sbjct: 605 NDDKRKIYVTQEYELLKNLVIQAIYRIKKRKVESEMLR-IREELRTEQDQANLEILLSKY 663

Query: 619 SILHEVHI 626
             L E   
Sbjct: 664 QKLKEAER 671


>gi|217967698|ref|YP_002353204.1| DNA primase [Dictyoglomus turgidum DSM 6724]
 gi|217336797|gb|ACK42590.1| DNA primase [Dictyoglomus turgidum DSM 6724]
          Length = 577

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 168/617 (27%), Positives = 273/617 (44%), Gaps = 56/617 (9%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            DF++++   + I ++I +YV+  +   N     Y   CPFH EKTPSF+ +  KG Y+C
Sbjct: 6   EDFVEEVKQRVNIVDVISRYVNLKKTGKN-----YVGLCPFHQEKTPSFYVSPDKGLYHC 60

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C   GD  SFL      +F E+++ LA   G+ LP    K E+        + + +  
Sbjct: 61  FGCGAAGDVFSFLINYRNLTFREALEELAREVGLELPK---KDERISAEANIFLEINKAV 117

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
             F+H  L +        YL +RG+ S   E F LGYAP +   L ++L +KGFS++ I+
Sbjct: 118 ATFYHIYLNSKYGAEGRLYLKKRGVSSEIQEKFLLGYAPLNPTLLLKYLEKKGFSKDDIL 177

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
           +A +L    +     D F  R++FPI + RG+VI FGGRTL  GE  KYLNSPE+ LF K
Sbjct: 178 KAKVLYFIKDEWK--DPFAGRVVFPIMNPRGKVIGFGGRTL-TGEEPKYLNSPESDLFSK 234

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
           GKNLY  + A   ++K              ILVEGYMD +SL QAG+ N V+SLGTA T 
Sbjct: 235 GKNLYALYQAKESIKK----------EGEAILVEGYMDAISLHQAGITNAVASLGTAFTS 284

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
           +Q +LL   + +++L +D D  G +A  +A+ L+    +        L    +DPD F++
Sbjct: 285 HQAKLLKSYTNKVILGYDQDSAGYQAGKRALSLLELEGLE--VYWLSLPHDVKDPDEFVQ 342

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
            Y K  F + + ES   +D L +                 +  L+  I  +    LR   
Sbjct: 343 KYSKEEFLRFVKESKTSLDFLIENTLNLPM--------NFKEKLEEIIEILTSSILRSKN 394

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
               +++++Q       +        ++  + R     S R      +        S  E
Sbjct: 395 ILVQQEKIKQYLPVISRKLGVPEEGLQREIQKRIFSDRSYRNDVKIEITRYFG--VSKTE 452

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             LL  ++        Q + ++   +     Q++                     R+ E 
Sbjct: 453 EVLLGLILL--KTNNSQIRNMSPEDFSFPLYQEVLKKW-----------------RIWEG 493

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              E L   D   R     + ++    ++  +        +++ R+    K+EI K I +
Sbjct: 494 TLEEFLNLWDEDKRVLIDRAISSGEEFINQEEVIPFLWDHFQKLRI----KKEINKLIEE 549

Query: 605 VTAKGEAEKTAILISIL 621
           ++   +  K   L+  +
Sbjct: 550 LSKVEDPAKEKELMEEI 566


>gi|226227297|ref|YP_002761403.1| DNA primase [Gemmatimonas aurantiaca T-27]
 gi|226090488|dbj|BAH38933.1| DNA primase [Gemmatimonas aurantiaca T-27]
          Length = 657

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 151/685 (22%), Positives = 267/685 (38%), Gaps = 94/685 (13%)

Query: 1   MN---YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           M       + ++ +     I  ++ ++V   R       G +   CPFH  K P+F  + 
Sbjct: 1   MRARMIADELVEQVRSAADIVEIVSEFVPLRRSG-----GTWRGPCPFHQGKNPNFSVSP 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117
           S G Y+CF CH  GD  +F+   LG  +  +V+ +    G+ + +  P+  + +      
Sbjct: 56  SHGSYHCFVCHESGDVFTFVRKRLGLDWPAAVKYVGEKVGIEV-IDTPRRAQVQDPNAPN 114

Query: 118 IRLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
              +  A ++F   L + +  +    YL +RG+DS A + F LG+AP    +LR +L   
Sbjct: 115 HEALAAAAEWFQQQLSDEQIGRDARAYLTQRGLDSGAWQRFGLGFAPRDAQALRRYLHSL 174

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           G  + +++EAGLL   D       RFR R++FPI    G+ + FGGR +   +  KYLNS
Sbjct: 175 GHDDARLLEAGLLGLRDGDTEPRVRFRGRVMFPIHDELGRPVGFGGRAM-GDDQPKYLNS 233

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE+ +F K + LY    A   ++++ R           I+VEGY+D + L  AG++ VV+
Sbjct: 234 PESPVFQKRRTLYGLHTAKQAMRRTERA----------IVVEGYLDAIRLALAGIEEVVA 283

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            LGTALTE Q +LL + +  I L +D D+ G +A +++    +  L     V  V L  G
Sbjct: 284 PLGTALTEEQAKLLVRYASEIFLLYDSDEAGQKATFRSG---MELLREKAAVRVVTLPDG 340

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDS++R  G++A E  + +++ + D   +       F+           L   I    
Sbjct: 341 EDPDSYVRVQGRSAMETQLAQAIDVFDRQVQLLERRGWFSDLRRSRRAVDKLLPTIRAAA 400

Query: 417 DQKLRYYYSQAIRD--RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           D   R  Y   + D  RL +       E        +  A  R     +           
Sbjct: 401 DPLTRDLYVARLADVTRLDKAAIAAEAEAQAEAERRRSTALVRQSPQQAGPPTDFGAPPH 460

Query: 475 KLSKKP------------------------------------------------SLREAA 486
           +    P                                                   E A
Sbjct: 461 EGQGPPFDVGEEQGGVALPEPASDKAARTPWKGRRGKQGPEWKVTAIPPRPRSDEPVERA 520

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
           L+  ++    + +   +      + ++   +L+  L     +      E+I   L     
Sbjct: 521 LVRAMLFDRGVAERVAERHPPESFRSDACSELFGVLLDAPFD---CDIEQIASHLSPDAL 577

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
             +L++L             TE +  D               R+L  + + I + + +  
Sbjct: 578 R-VLREL-------------TEGSPFDAEAADITLSLSRLDARILEDRVDAILEAMRRTD 623

Query: 607 AKGEAEKTAILISILHEVHIQIHQI 631
            + E +    L+    E+  ++ ++
Sbjct: 624 DRTEKDT---LMRERLELETELRRL 645


>gi|319779663|ref|YP_004130576.1| DNA primase [Taylorella equigenitalis MCE9]
 gi|317109687|gb|ADU92433.1| DNA primase [Taylorella equigenitalis MCE9]
          Length = 594

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 154/631 (24%), Positives = 270/631 (42%), Gaps = 45/631 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
              F  +LL    I ++IG Y+   +         Y   CPFH+EK PSF  N +K  Y 
Sbjct: 2   SDSFTNELLSRTNIVDIIGGYLTLRKSGA-----SYIGLCPFHNEKRPSFSVNSAKQIYK 56

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-------IQTD 116
           CFSC   G+ ++FL    G +F E+ + LA   G+ +P      E++++        Q  
Sbjct: 57  CFSCGESGNVITFLMKYNGMTFPEACKYLADKLGLEMPKRHRLTEREQQELKNKKSRQEL 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           +   +  A +++  +L+++  K    Y+ +R ++  +I+ F LG++     +L       
Sbjct: 117 MCDCLLQAQEYYVFNLQDS--KEAKTYIAKRELNEDSIKKFSLGWSGSEYKNLAHKFPDY 174

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
                  +   L    +      DRFRNRL+FPI +  G+ I FGGRTL+  +  KYLNS
Sbjct: 175 DDKLLMDVGLVL---QNEELRKRDRFRNRLMFPILNENGKTIGFGGRTLNNDQP-KYLNS 230

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +FHKGK LY  F     + K  +           ++VEGYMDV++L Q G    V+
Sbjct: 231 PETEVFHKGKELYGLFENKKGIIKEKKA----------LVVEGYMDVIALSQHGFDYAVA 280

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA ++  ++ L++ +  I+ CFDGD  G  AA+KA++  L  L  G+ + F+ L   
Sbjct: 281 TLGTATSQTHIQKLYRYTSTIIFCFDGDTAGREAAWKALNECLPILKEGHSIRFLFLPPE 340

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPDS++R YG T F+  I  S PL   L        + N  + RA     +K  I  I 
Sbjct: 341 HDPDSYVRAYGGTQFKNQIKSSKPLSIYLLDELKTRFNLNEAEGRAGCYSFVKPLIATIP 400

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              ++    + +   L    ++++ +       +KK  R   +    +    S +     
Sbjct: 401 KSAIKTQMEKEVSKLLNLTHEEFLADLGLSDTDFKKADRPYKKTKIKKSTRTSKV----- 455

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E   +  L  +P + Q+      +I     + + +  F+   +  Q     + 
Sbjct: 456 --SVEPLEYKFIKLLAMYPYLTQKLSARHIEILKKFPKYRLVHEFINLIYKHQISVYSQL 513

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           ++Q   +    ++L  ++    +          +  +V +   Q + L      +  +  
Sbjct: 514 LNQVDIDVDLLQILDSIESSPLNLD-----EVESPEEVLKDTLQRVEL----DSIQTEMS 564

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           EI ++   +    +      L      +   
Sbjct: 565 EIAQR-EDLEHSQKESMLQRLNRRYIALRNH 594


>gi|300087893|ref|YP_003758415.1| DNA primase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527626|gb|ADJ26094.1| DNA primase [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 585

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 158/621 (25%), Positives = 262/621 (42%), Gaps = 59/621 (9%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           D + ++     I   IG+Y    R             CPFH EK  SF     +  ++CF
Sbjct: 2   DTVSEIKNRADIIEFIGRYTKLSRSGK-----ALKGLCPFHAEKHGSFFVYPDQQSWHCF 56

Query: 66  S-CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
             C V GD  SF+    G +F ESV+RLA I GVP+        K ++ +  L ++   A
Sbjct: 57  GACGVGGDIFSFIMKKEGLTFPESVERLAEIYGVPM-NNIGASSKTQEQRDTLFQVNSAA 115

Query: 125 TDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
              FH   L + + ++   YL  RG+ S ++  F+LG+A      L+EHL  +G+ +E +
Sbjct: 116 ARLFHDLLLNSPQAEKARQYLGNRGVSSTSVSDFQLGFALPDWQHLKEHLNSQGYQDEFV 175

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
           +E GLL   D+    YDRFR++L+ PI   + +VI FG RT+      KY+NSP++  F 
Sbjct: 176 LETGLLAKSDSG-RIYDRFRDKLMIPIFDHKSRVIGFGARTM-DDTLPKYINSPDSPTFS 233

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K   L+    A++ ++KS             I+VEGY DV++  QAG +N V+S+GTA+T
Sbjct: 234 KSAALFGINMAVSDIRKS----------DQAIIVEGYFDVIASHQAGFKNTVASMGTAIT 283

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           E Q+  L KL+  I+L  D D+ G   A      +    + GN +   +   G+DPD  I
Sbjct: 284 ESQVNTLRKLTKNIILALDADEAG---AEAMARSLPHEAVLGNELKVAVAPAGQDPDDII 340

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R      +  LI E+ PL++ + +R + N    T   +++    + N I  IKD   + +
Sbjct: 341 R-KNPEDWNSLIGEAKPLMEFIIERTSHNYDLKTAGGKSKFSDEILNYIAAIKDPVRKGH 399

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y   +  ++     +     +   R   K +  R     +                    
Sbjct: 400 YLAELSRKVAIDTAELQYGLNRLKRTSSKASPERVGPAIAANSTS--------------I 445

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL---------- 533
           E  LL   I HP +        A+  +   E ++++  L          L          
Sbjct: 446 EDYLLSIYIRHPELRATCQGMKAEF-FAGTENREIFKKLNDTSKNADSALVIEDVFRPHY 504

Query: 534 ---------PEEIHQRLCERGFGELLKQLDRQVRDAG-LWSATTEANIVDVRQGYQQALA 583
                       + +RL E       K L     +   +        I +  +   + + 
Sbjct: 505 DYLMSIQEPKALLQERLTECALRIEEKYLKSTASNIKTILENLEPDAIEESERCQHRLIL 564

Query: 584 LYKRFRLLSRQKEEIEKQIAQ 604
           + +R   + R K E+ ++  +
Sbjct: 565 INQRLADIFRSKNELLRRSRR 585


>gi|126696257|ref|YP_001091143.1| DNA primase [Prochlorococcus marinus str. MIT 9301]
 gi|126543300|gb|ABO17542.1| CHC2 zinc finger:Toprim domain-containing protein [Prochlorococcus
           marinus str. MIT 9301]
          Length = 677

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 151/628 (24%), Positives = 277/628 (44%), Gaps = 53/628 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           +     I+++     I ++I +++   ++       ++   CPFHD+  PS   + SK F
Sbjct: 4   SIHPRTIQEVKEKADIVDVISEHIVLKKKGK-----EFVGICPFHDDTKPSMTVSPSKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EKKEKIQTDL 117
           YYCFSC   G+ + FL      +F + V  LA    + +  ++       +K+   + +L
Sbjct: 59  YYCFSCGAGGNSIKFLMEFTRANFSDVVLSLAKKNNINVENLEGPQVEAYKKQLSRKEEL 118

Query: 118 IRLIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            +++ V  ++F   L N+   + L Y   +R + +  I+ F+LG+AP+S   L  +L + 
Sbjct: 119 YKILRVTKNWFKSQLNNSLGLEALKYLTSKRNLSNKIIDNFELGFAPNSWNDLFNYLSKV 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           + F    I+ +GL I  DNS   YDRFRNRLI PI   +G+V+AFGGR+L  G+  KYLN
Sbjct: 179 EKFPINLILASGLAISKDNSDKIYDRFRNRLIVPIHDMQGRVVAFGGRSL-DGQEPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ +F KGK L+ F  A + ++K              I+VEGY DV+SL   G+ N V
Sbjct: 238 SPESEIFEKGKMLFAFEKASSNIRK----------RDKAIIVEGYFDVISLHSKGITNSV 287

Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352
           +SLGTAL +YQ+  L +   +  I+L FD D+ G+ A  + I  V    I        + 
Sbjct: 288 ASLGTALNKYQISQLCRCTDNKNIILNFDSDNAGILATKRVIKEVESLSIHDQINLKILQ 347

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           LS  +DPD ++  +    +  LI  S   +D    +  +++     +    +   L   +
Sbjct: 348 LSDFKDPDEYLNSHTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSEIFQSVISSLVKLL 407

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           + +     R +Y Q + ++L +   +   +     R   K  R   +    ++       
Sbjct: 408 SKLPQSSTRTHYLQKVSEKLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQP------ 461

Query: 473 KGKLSKKPSLREAALLLTLINHPAI---LQEQYQELADIRYDNNELQKLWSFL------- 522
                 +    E+ ++   ++ P +   +++++Q+     ++ + +Q LW  +       
Sbjct: 462 --NEISRREKNESEIIFYYLHCPELRLFIRDEFQKREINGFNTSYIQSLWEAISKIEQNN 519

Query: 523 --FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV------ 574
              +   + K    + + +         LL                   N  ++      
Sbjct: 520 LGLNYLNDLKQSNSQNLQKDFSSINLISLLPDYLALNNPESSNKINILINPNELFLTLLS 579

Query: 575 --RQGYQQALALYKRFRLLSRQKEEIEK 600
             +      L+L +++  L R +  IE 
Sbjct: 580 NPKDNLLGTLSLLEKYNSLKRCRHLIES 607


>gi|260222949|emb|CBA33027.1| DNA primase [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 669

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 152/493 (30%), Positives = 239/493 (48%), Gaps = 32/493 (6%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
           P+ FI++LL    +  ++G+YV   +   N     +   CPFH EK+PSF  + +K FY+
Sbjct: 2   PQSFIQELLARADVVEIVGRYVQLKKGGAN-----FMGLCPFHGEKSPSFTVSPAKQFYH 56

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP------KIEKKEKIQTDL 117
           CF C   G+ + FL    G +FIE+V+ LA   G+ +P  +       + + + + Q  L
Sbjct: 57  CFGCGKNGNAIGFLMDHAGMTFIEAVKDLAGQFGMVVPEEEGSPQDRARAQAQREKQNTL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             ++E A D +   LK +   R   Y   RG+     + F LGYAP+   +L        
Sbjct: 117 TSVLEKACDAYKRGLKES--PRAIEYFKGRGLSGEVAKQFGLGYAPEGWRNLASIF--PE 172

Query: 178 FSEEKIIEAGLLIDGDNSA----TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
           +++  ++E+GL+I  +         YDRFR+R++FPIR+ +G+ I FGGR L   E  KY
Sbjct: 173 YTDPLLVESGLVILHEAENGADEKRYDRFRDRVMFPIRNIKGECIGFGGRVL-GDEKPKY 231

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +F KG+ LY  F A + L+             ++++ EGYMDV++L Q G  N
Sbjct: 232 LNSPETPVFSKGRELYGLFEARSSLR----------EHGYVLVTEGYMDVVALAQLGFPN 281

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V++LGTA T   ++ L++ +  +V  FDGD  G RAA KA+D  L        + F+ L
Sbjct: 282 AVATLGTACTNDHVQKLFRFTDAVVFSFDGDAAGRRAARKALDGALPFASDVRSIKFLFL 341

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DPDSFIR YGK AF   + ++ PL   L +   +    +T + RA +  + K   N
Sbjct: 342 PAEHDPDSFIRAYGKEAFADYVAKATPLSRFLVESAQDACDLSTAEGRARMASNAKPLWN 401

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            + D  L+      I   +Q    +  T  +            R ++  +          
Sbjct: 402 QLPDGALKLQLLSEIAQLVQLGSTELGTLWAHGTAKPAPAEAPRRKREAAP--AAEFDPD 459

Query: 474 GKLSKKPSLREAA 486
           G+        E +
Sbjct: 460 GEHFAYEEPAEFS 472


>gi|57239059|ref|YP_180195.1| DNA primase [Ehrlichia ruminantium str. Welgevonden]
 gi|58579002|ref|YP_197214.1| DNA primase [Ehrlichia ruminantium str. Welgevonden]
 gi|57161138|emb|CAH58051.1| putative DNA primase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417628|emb|CAI26832.1| DNA primase [Ehrlichia ruminantium str. Welgevonden]
          Length = 592

 Score =  314 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 157/638 (24%), Positives = 272/638 (42%), Gaps = 56/638 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+     I  +   + +S+++GQ V   +R  N         CPFH+EKTPSF  +D KG
Sbjct: 1   MSI----IDLIKSKVKLSDVVGQRVKLTKRGNNI-----IGLCPFHNEKTPSFTVSDEKG 51

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            YYCF C   GD + F   +    F  +V  LA + G+ +P               LIRL
Sbjct: 52  LYYCFGCGASGDVIQFTCDINALDFKGAVSYLAEMYGIDVPQHTDNQI-------GLIRL 104

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  AT +F   L +        Y+  R I  + I+ F+LGYAP   + L ++L   GF+ 
Sbjct: 105 LNEATIWFEKQLYSN--SFALEYVKNRRITDNTIKKFRLGYAPA--HGLVKYLLSCGFNI 160

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + I + GL    D      D F NR++FPI +S G VI FGGR++   ++ KYLNS  ++
Sbjct: 161 DDIRKTGLSNVNDQ-----DYFYNRIMFPICNSVGDVIGFGGRSIINTQNPKYLNSKASV 215

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
            F K ++LY    A+   +K+ +          II+VEGYMD L L Q G+ NVV+ LGT
Sbjct: 216 FFQKRESLYAAHIAVREARKAGK----------IIVVEGYMDALILHQLGIGNVVALLGT 265

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ++T   L  LW +S  +++  DGD  G  A  KA  L L  +  G  + FV L   +DP 
Sbjct: 266 SMTSEHLTYLWDISTEVIVWMDGDVAGKMACVKAASLALSLIKSGCIIKFVNLDTCDDPY 325

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN---TPDERAELEIHLKNCINHIKD 417
                 G T    ++  +  L + +W  E    +      P++   L+  +K  I+ I D
Sbjct: 326 DICINKGITDVMAILDSAKLLSEFIWDYELSKVTSGSAIMPEQCVMLDARMKYYISKIND 385

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             +  YY +   ++++ L Q   ++   +                   + Q   +  +  
Sbjct: 386 SNIAKYYKKYFYNQVRNLQQYSNSKSQIFDSNGL---------VKKLVVNQFDNMTTESF 436

Query: 478 KKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVE--QKYFL 533
            K   +  A+   ++  P +L     + +       +N L +L   + +  +        
Sbjct: 437 SKEYNQLRAI-NIIMEFPELLDNPIIFDQFTKFHISDNSLYELQQHILNIKIALCDSVMS 495

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +   L + G   L+  + +++      +  +     D     ++ +       +L  
Sbjct: 496 KNVLLLELQKAGLSHLIDYVFKKMVGFKYNTTLSHDKKNDHLAISKKEIEKI----MLVE 551

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           Q   ++++I  +   G+      L      +  ++ ++
Sbjct: 552 QLRYLQEEILDLRLSGKDSLAEKLSHQAQAIDTRLREL 589


>gi|317050369|ref|YP_004111485.1| DNA primase [Desulfurispirillum indicum S5]
 gi|316945453|gb|ADU64929.1| DNA primase [Desulfurispirillum indicum S5]
          Length = 601

 Score =  314 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 158/635 (24%), Positives = 258/635 (40%), Gaps = 43/635 (6%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M    +D I+ +L  + I  ++G +V   +       G +   CPFH EKTPSFH    K
Sbjct: 1   MRKIRQDSIERVLNAVDIVEIVGGHVHLRKAG-----GSHIGLCPFHSEKTPSFHVTPDK 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
           G YYCF C   G+   FL   LG +F+E+++ L+   GV L        +++  + +L+ 
Sbjct: 56  GLYYCFGCGAGGNASKFLMEKLGMTFVEAMELLSQKTGVALEYESGTEPREDSRRENLLT 115

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L       F + L   ++ R   YL+ R I    I+ F LGYA          L +    
Sbjct: 116 LNRRVLLSFRNQL--GKNARARQYLESRLIPGQLIDEFGLGYA----DGREYSLLELFEE 169

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
               +    LI        YDRFR R++FPI  + G V+ F GR LS     KY+NSPE+
Sbjct: 170 NHDDLLELGLIASGEDKRLYDRFRQRVMFPIWDAAGGVVGFAGRDLSGKSPAKYMNSPES 229

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LF K K LY +  A   ++K  R           I+VEGY DV+   Q G+   V+ +G
Sbjct: 230 GLFEKKKLLYAYHIAKASIRKKRRA----------IVVEGYFDVIRAHQQGLTETVAVMG 279

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+L+ Y  R L      + + FDGD+ GLRAA +  +L          +  V L  G DP
Sbjct: 280 TSLSTYHAR-LLGQQTDVYVVFDGDEAGLRAALRTSEL---LTQSDLALRVVFLPDGHDP 335

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D++ + +    FE+L+ ++  + +    R  E+ S     + ++    L+  IN I D  
Sbjct: 336 DTYFQRHRVEQFEELLSQARDVGEFRIDRLLES-SSGDVTQLSQAVRELREFINRIPDSI 394

Query: 420 LRYYYSQAIRDRLQQL-FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            R  Y+  +R+R Q   F    +          ++  +     P       S ++  L K
Sbjct: 395 RRQAYANYLRERTQIDPFGSGQSPSGRSRMRPPRSGGNLSTGQPLGSEASGSFLRESLRK 454

Query: 479 KPSLREA-----ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                +       LL  + +   + +E    L            +     S  +E     
Sbjct: 455 VKKPVDKNDAAPYLLKVMFSSEEMFEEISSALGSDILSAP-YSTIKDQATSWHLE--RLP 511

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            E+I +RL +      +  +             T   I  +   Y     ++ R   L +
Sbjct: 512 LEQIIERLMDSPLAAPMAHILSLDIGKEDILGMTPDIIEKIESLY-----MHHRHENLKQ 566

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           Q        ++  A    ++   ++  L E+  ++
Sbjct: 567 QL--FAPSPSESGAPLSEDERRRMLQELLEIQREL 599


>gi|325971190|ref|YP_004247381.1| DNA primase [Spirochaeta sp. Buddy]
 gi|324026428|gb|ADY13187.1| DNA primase [Spirochaeta sp. Buddy]
          Length = 598

 Score =  314 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 147/633 (23%), Positives = 265/633 (41%), Gaps = 44/633 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 ++ +   IPIS ++  YV    R      G  W  CPFH EKT SF   D +GF
Sbjct: 3   KVSDSVLEQIKARIPISEVVSDYVTLSARG-----GRLWGLCPFHQEKTASFSVVDDQGF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCFSC   G    F+  +    FIESV+ LA  AGV +    P+ +K   +   L  L 
Sbjct: 58  YYCFSCKKGGSMFDFVMEMEKVPFIESVKILAKKAGVEIAEESPEDKKSRDLNETLYDLY 117

Query: 122 EVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +     FH  L ++ + +    YL +R +  +  E F LGYAP     L   L+++ +S+
Sbjct: 118 DKIAGSFHFLLTSSAQGEHAREYLRKRNVAQNMWETFNLGYAPQDSSWLYSFLKKRHYSD 177

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + + ++GL    + +   Y  FR+RL+FPIRS +G+ +AFGGR L+     KY+N+PET 
Sbjct: 178 DLLAQSGLFSQNNAA---YPLFRDRLMFPIRSWQGKTVAFGGRDLTFTSKAKYINTPETA 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++ K  +L+  F +L  ++K  +           IL EG  DV++L Q+G  N ++ LGT
Sbjct: 235 IYSKKHHLFGLFESLETIKKGQKA----------ILCEGNFDVVALHQSGFTNAMAPLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           + TE Q +LL +    + + FD D  G  A  K++ +       G   + + L+  +D  
Sbjct: 285 SFTEEQAKLLRRYCTSVEILFDSDKAGQSATAKSLVIAQNL---GMENSVLTLANAKDAS 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G+ A ++ + +       L           TP  ++ +   ++  ++       
Sbjct: 342 ELVQLEGEQALKRALQQPQQGFRYLVNNAVNQYDILTPKGKSAVFNAVRPYLDATASSIE 401

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    + +   L         ++S                          +    L+   
Sbjct: 402 KQDLIKRLAAVLNVDESSIHDDYS-----------RNAPAEVKVVATVGEMRVKPLNPAI 450

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              +   +LTL+N+  +  +   ++A    ++ E + L+  L     E+     E I Q 
Sbjct: 451 ISVDLYAMLTLVNNRELYLQTRYKIAVEDLEDAEAEALYDVLEEAAREEVGKHDEYILQM 510

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +      +                    +  ++      L  Y++ RL +++  +   
Sbjct: 511 IGDEQLRSDVASSFTMEEFKLAPQRVINEAVNRIQ------LRTYEKKRLSNKRLLD--- 561

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            I+ +   G+ E    L+    E+  +I Q+  
Sbjct: 562 -ISLLDGTGD-EGIEELLREKTEIDAKIAQLRK 592


>gi|301064637|ref|ZP_07205031.1| DNA primase [delta proteobacterium NaphS2]
 gi|300441257|gb|EFK05628.1| DNA primase [delta proteobacterium NaphS2]
          Length = 599

 Score =  314 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 149/620 (24%), Positives = 264/620 (42%), Gaps = 55/620 (8%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           +++     I +++GQ+V   +   N     +   CPFH EK PSF  N  K  ++CF C 
Sbjct: 25  EEIKQAADIVSVVGQFVQLKKAGKN-----FVGLCPFHGEKAPSFTVNQDKQMFHCFGCK 79

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRLIEVATD 126
             GD  +F  A    +F E+++ LA    V LP      + +KK  ++ DL R  E+A  
Sbjct: 80  KGGDVFAFWMAYHSLTFPEALKDLADRYNVRLPRKQFSAEEKKKADLREDLYRANELAAV 139

Query: 127 FFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
           +F   L +  R K    YL++R +    IE F+LGYAP     L++ L +   S E    
Sbjct: 140 YFQRELAHPVRGKAGRDYLEKRFVPQDMIEAFRLGYAPKGWDGLKKFLLKNKISLETAFL 199

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRS--SRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
           AG+L   D     YD FR R++FPI     + +V+ FGGR L      KY+N+PET LFH
Sbjct: 200 AGVLKRSDKG-RYYDLFRERVMFPIMDLTPKKRVVGFGGRVL-DDTLPKYVNTPETPLFH 257

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           KG  LY F  +   ++++ R           ++VEGYMD L+L + G++ VV++LGTAL+
Sbjct: 258 KGACLYGFAASRKAIRETGRA----------VVVEGYMDCLALRKHGLEEVVATLGTALS 307

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           E  +R L  +    ++ FD D+ G +AA + + + L           V+L +G DPDSF+
Sbjct: 308 ETPVRKLKGIGREAIVVFDADEAGKKAALRTLPIFLNER---LPAKAVVLPKGHDPDSFV 364

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
              G  AF KL+  +  L D    ++      +  D +  +   +   +  ++++  R  
Sbjct: 365 NSRGLDAFSKLLDAAPSLFDFYIDQKL-GSRTDDIDHKVSVLEEILPILTKVRNETQRSL 423

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y + + ++ +       +      +   K     + K     L  +  V         L 
Sbjct: 424 YMKRLSEKTEIAEPLLFSALKDANQSSVKENPGNEIKRQFASLNANRSVGELQLLNLLL- 482

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
                    ++P  + +           N  ++++   ++  +   +    + I +RL  
Sbjct: 483 ---------HYPETVGQLRGRHCRALISNPTVRRIVDIIYDGYNHSQNLTFDVIQERLDH 533

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 L++           +  +E  +    + + +             QK+ I     
Sbjct: 534 DEDRIWLREF------GFRPAFCSEREVEQAVREFIE-----------KAQKKRIANSFK 576

Query: 604 QVTAKGEAEKTAILISILHE 623
           +    G+ +    ++    +
Sbjct: 577 RAM--GDPQAINEILKRKVQ 594


>gi|123968454|ref|YP_001009312.1| DNA primase [Prochlorococcus marinus str. AS9601]
 gi|123198564|gb|ABM70205.1| CHC2 zinc finger:Toprim domain-containing protein [Prochlorococcus
           marinus str. AS9601]
          Length = 677

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 150/628 (23%), Positives = 270/628 (42%), Gaps = 53/628 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           +     I+++     I ++I +++   ++       ++   CPFHD+  PS   + SK F
Sbjct: 4   SIHPRTIQEVKEKADIVDVISEHIVLKKKGK-----EFVGICPFHDDTKPSMTVSPSKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117
           YYCFSC   G+ + FL      +F + V  LA    + +  ++    +  K     + +L
Sbjct: 59  YYCFSCGAGGNSIKFLMEFTRANFSDVVLSLAKKNNINVENLEGPQVEAYKKQLTRKEEL 118

Query: 118 IRLIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            +++ V  ++F   L N+   + + Y   +R + +  I+ F+LG+AP+S   L  +L + 
Sbjct: 119 YKILRVTKNWFKSQLNNSLGVEAMKYLTSKRNLSNKIIDNFELGFAPNSWNDLFNYLSKA 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           + F    I+ +GL I  DNS   YDRFRNRLI PI   +G+V+AFGGR+L  G+  KYLN
Sbjct: 179 EKFPINLILASGLAISKDNSDKIYDRFRNRLIVPIHDMQGRVVAFGGRSL-DGQEPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ +F KGK L+ F  A + ++K              I+VEGY DV+SL   G+ N V
Sbjct: 238 SPESEIFEKGKMLFAFEKASSNIRK----------RDKAIIVEGYFDVISLHSKGITNSV 287

Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352
           +SLGTAL +YQ+  L +   +  I+L FD D+ G+ A  + I  V    I        + 
Sbjct: 288 ASLGTALNKYQISQLCRCTDNKNIILNFDSDNAGILATKRVIKEVESLSIHDQINLKILQ 347

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           LS  +DPD ++  +    +  LI  S   +D    +  +++     +    +   L   +
Sbjct: 348 LSDFKDPDEYLNSHTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSEIFQSVISSLVKLL 407

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           + +     R +Y Q + ++L +   +   +     R   K  R   +    ++       
Sbjct: 408 SKLPQSSTRTHYLQKVSEKLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQP------ 461

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFL------- 522
                 +    E+ ++   ++ P +      E        ++ + +Q LW  +       
Sbjct: 462 --NEISRREKNESEIIFYYLHCPDLRLFIRDEFLKREINGFNTSYIQSLWEAISKIEQNN 519

Query: 523 --FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV------ 574
              +   + K    + + +         LL                   N  ++      
Sbjct: 520 LGLNYLNDLKQSNSQNLQKDFSSINLISLLPDYLALNNSESSNKINIFINPNELFLTLLS 579

Query: 575 --RQGYQQALALYKRFRLLSRQKEEIEK 600
             +      L+L +++  L R +  IE 
Sbjct: 580 NPKDNLLGTLSLLEKYNSLKRCRHLIES 607


>gi|219847264|ref|YP_002461697.1| DNA primase [Chloroflexus aggregans DSM 9485]
 gi|219541523|gb|ACL23261.1| DNA primase [Chloroflexus aggregans DSM 9485]
          Length = 655

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 156/667 (23%), Positives = 280/667 (41%), Gaps = 71/667 (10%)

Query: 6   DFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYY 63
             I D+  +I I +LI    V   R         +   CPFH + +TP+F+       +Y
Sbjct: 2   SVIDDIKANIDIVDLINSMGVGLRRSGR-----SFVGFCPFHPNTRTPAFYVYPDTQSFY 56

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF CH  G    F+    G  F E+++ LA  AG+ L   +    +++  +  L+ +  +
Sbjct: 57  CFGCHAAGTVFDFVMRKQGIDFKEALELLAERAGIRLEPKNDAQRQEDARRARLLEINGI 116

Query: 124 ATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFSEE 181
           A  +F++ L N +R +    Y+  RGI+  AI+ F++GY+ D    L  +   +KG+S E
Sbjct: 117 AARYFNYVLLNLSRGEPGRAYVARRGINQDAIDAFQIGYSLDEWGHLFSYLHDKKGYSVE 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            II AGL I        YDRFRNR+IFPIR+ RG+VI FGGR L   E  KYLN+PET L
Sbjct: 177 DIIAAGLAI--PGERGPYDRFRNRIIFPIRNVRGEVIGFGGRAL-GDEQPKYLNTPETPL 233

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K + LY    A + ++ + R           I+VEGY+DV++  Q G +NVV+ LGTA
Sbjct: 234 FKKSEVLYGLDLARDAIRATNRA----------IVVEGYVDVITAHQYGFRNVVAPLGTA 283

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL------------------I 343
           L++  +  L +L+  + L  D D  G +A  + ++ +                       
Sbjct: 284 LSKAHINQLKRLTDNVYLALDADAAGQKATLRGLETIRTTGEEEGEGRMVTTAQGIVRLE 343

Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
               +  + L  G DPD  I       +++L+ ++ P++D   +  T     + P ++ +
Sbjct: 344 NDVTIRVIRLPAGRDPDEVI-AADPNLWQQLVEQAAPVMDFYLEAYTAGLDMHDPIQQRQ 402

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
               +   ++ + D   +  Y   +        +  +       +  ++N R R+++   
Sbjct: 403 AIERIIPLLSEL-DGAAQRVYVARVEQITGVRSELIVDLLRARVQPARRNDRSRNKRPLL 461

Query: 464 QRLMQSSLVKGKLSKKPSLR--EAALLLTLINHPAILQEQYQELADIR------------ 509
           +                  R  EA LL   + +P++     + L +              
Sbjct: 462 RPEEPPLPPTPSPPLDERRRKTEAYLLALALRYPSVNIAIEKLLEEYHARCREAGELFGA 521

Query: 510 -----YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
                 +    Q +W    +  ++Q+    E +   +      E L +         L  
Sbjct: 522 GVEDLLEEPLHQAIWQAYLATPLDQRPTDQESLQAWI------ETLGEPLTGGAKPLLEL 575

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
                + V  R   +Q   + ++ +++ R      +++ ++      E+   ++  L E+
Sbjct: 576 LERRPDDVRFRHEAEQCARILRKAQVMER-IRRYNERLRELD---NEEEMERILHHLREL 631

Query: 625 HIQIHQI 631
                QI
Sbjct: 632 STYAEQI 638


>gi|256396129|ref|YP_003117693.1| DNA primase [Catenulispora acidiphila DSM 44928]
 gi|256362355|gb|ACU75852.1| DNA primase [Catenulispora acidiphila DSM 44928]
          Length = 700

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 135/454 (29%), Positives = 206/454 (45%), Gaps = 30/454 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I  +     I +++G  V         +KG     CPFHDEK+PSF  + +K FY
Sbjct: 5   IKDEDIDRVRQAASIVDVVGAVVQLRNGGGGNLKGL----CPFHDEKSPSFQVSPAKNFY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120
           +CF C V GD L F+      SF E+V+RLA    + L   +     +     +T LI  
Sbjct: 61  HCFGCGVGGDVLKFVMEYDHLSFPEAVERLAGQYNIELRYTEGGYTNQGVRSERTRLIEA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A ++F   L           L  RG D+ AIE F +G+AP+S  SL  HLR +GF++
Sbjct: 121 HKAAAEYFVDQLSTPAAAHARELLAARGFDAGAIEQFHVGFAPESWESLVRHLRGRGFTD 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239
           ++I+  GL  +      + DRFRNRL++PI    G VI FGGR L+   ++ KYLNSPET
Sbjct: 181 KEILTGGLASE--GRRGAMDRFRNRLMWPIADLSGDVIGFGGRRLTDDPDTPKYLNSPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            ++ K   LY    A   + K  R           ++VEGY DV++   AGV   V++ G
Sbjct: 239 PIYKKSSVLYGLEMARREIVKQERA----------VVVEGYTDVMACHLAGVPTAVATCG 288

Query: 300 TALTEYQLRLLWK--------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           TA  E  +++L +        L   +V  FDGD  G +AA +A    L       +    
Sbjct: 289 TAFGEEHIKILRRLLADRNQFLGVEVVFTFDGDSAGQKAAMRA---YLDEDKFVTQTFVA 345

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP       G  A  +L+     L + + + E   ++ +  + R          
Sbjct: 346 VEPSGMDPCDLRLAKGDAAVRELVATRTRLFEFVIRAELAKQNLDESEGRVHALRTTAPI 405

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
           +  I+D  LR  Y++ +   L    +   +    
Sbjct: 406 VAKIRDSALRNDYTRRLAGWLGLEERDVQSAVRR 439



 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 12/165 (7%), Positives = 47/165 (28%), Gaps = 7/165 (4%)

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
             +++         +  E   +   +  P +    +  LA   +       + + + +  
Sbjct: 539 EAATVPGRGQRDPVAGAEREAVKMALQFPQLAGATFDGLAPEEFTVPAYAAVCAAVRASG 598

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                        R+ ++   + ++ L  ++                  + Y   +    
Sbjct: 599 GCAAGND-NNWTGRVQDQAPDDAIRGLITELT------VEPVHFRGKADERYVAEVMTRV 651

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           R   + R+ +++  ++ ++      E+   L   L  +      +
Sbjct: 652 RVHTVDRRIKDVRSKLQRLNPVTGQEEYNKLFGELVALEQYKRGL 696


>gi|162452722|ref|YP_001615089.1| DNA primase [Sorangium cellulosum 'So ce 56']
 gi|161163304|emb|CAN94609.1| DNA primase [Sorangium cellulosum 'So ce 56']
          Length = 649

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 151/669 (22%), Positives = 264/669 (39%), Gaps = 82/669 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I  +     +  LIG+ V   RR        +   CPFH EKTPSFH + ++GFY
Sbjct: 2   ISPETIALVKERTDLVALIGESVRLARRG-----HSFTGLCPFHKEKTPSFHVSPNRGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-----QTDL 117
           +CF C   G  + F+  L G +F E+V+ LA  AG+ +     + E++E       + DL
Sbjct: 57  HCFGCKETGSAIDFVMKLEGRTFAEAVRALAERAGIEVAESLTEAERREAQAARRSKDDL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERG------------------IDSHAIEMFKL 159
             +  +A  FF HSL+       H                           + A++ F++
Sbjct: 117 YAVNHLAATFFEHSLRGGPGSAPHPLARHAHEELERRGLPLRDGDGAADPIADALQAFRI 176

Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219
           GYAP     L  +LRQ+G S       GLL+   + +  YDRFR+RL+F +    G+VIA
Sbjct: 177 GYAPFGWDGLSTYLRQQGVSPVLAERVGLLVPRSSGSGHYDRFRHRLMFAVTDVMGRVIA 236

Query: 220 FGGRTLSKGESV-------------------KYLNSPETILFHKGKNLYNFFGALNYLQK 260
           F GR L                         KY+NSPE+ ++ KG++L+    A   ++ 
Sbjct: 237 FSGRALPDPSPSELSSLGLTGPAPQADGAPAKYINSPESPIYTKGEHLFGLHQARQAIR- 295

Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320
                         ILVEG  DV++L   G+   ++ LGTA T  Q +L+ + +P ++L 
Sbjct: 296 ---------QRGEAILVEGNFDVVALHARGIGQAIAPLGTAFTPGQAKLIKRFAPAVILL 346

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380
           FDGD  G +A   A          G      +L  G DPD   R +G  A  +++  +  
Sbjct: 347 FDGDAAGKKATRAA---RAPCREAGLSARVAVLPSGVDPDDLARKHGPEAIARIVKAARG 403

Query: 381 LVDMLWKRETENRSFNTPD--ERAELEIHLKNCINHIKDQKLR---YYYSQAIRDRL--- 432
           L++ L     +  SF      E+      +   ++   D  LR     Y+  +  +L   
Sbjct: 404 LLEHLIDEALDGDSFGGSSLPEQLARVRAVTALLSEEDDPNLRMMAKLYADRLSSKLVIG 463

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
            +                 +      ++         +  + +   +       +L  ++
Sbjct: 464 GRSPDDLRQLERVVEESLSRPRSQPTREVIPSGQTTETWERARSRAQIQEVSLEILGAIL 523

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           + P +L +   + A    + +    + +   +   E       E   ++          +
Sbjct: 524 DFPELLADDDLQTALECLEGDVALAIVAARQNFTFEMG-LAASEFLAQVPAPIHSFAAGR 582

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           L   V +A    +T +A +++  Q   +        + L+RQK  +  Q+ +  +  +A+
Sbjct: 583 LVSPVFEAA---STAKATLLENSQKLSR--------QALARQKAAVVSQLQK--SAVDAD 629

Query: 613 KTAILISIL 621
               L+  L
Sbjct: 630 AENALLREL 638


>gi|58617061|ref|YP_196260.1| DNA primase [Ehrlichia ruminantium str. Gardel]
 gi|58416673|emb|CAI27786.1| DNA primase [Ehrlichia ruminantium str. Gardel]
          Length = 592

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 157/638 (24%), Positives = 270/638 (42%), Gaps = 56/638 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+     I  +   + +S+++GQ V   +R  N         CPFH+EKTPSF  +D KG
Sbjct: 1   MSI----IDLIKSKVKLSDVVGQRVKLTKRGNNI-----IGLCPFHNEKTPSFTVSDEKG 51

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            YYCF C   GD + F   +    F  +V  LA + G+ +P               LIRL
Sbjct: 52  LYYCFGCGASGDVIQFTCDINALDFKSAVSYLAEMYGIDIPQHTDNQI-------GLIRL 104

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  AT +F   L +        Y+  R I  + I+ F+LGYAP   + L ++L   GF+ 
Sbjct: 105 LNEATIWFEKQLYSN--SFALEYVKNRRITDNTIKKFRLGYAPA--HGLVKYLLSCGFNI 160

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + I + GL    D      D F NR++FPI +S G VI FGGR++   ++ KYLNS  ++
Sbjct: 161 DDIRKTGLSNVNDQ-----DYFYNRIMFPICNSVGDVIGFGGRSIINTQNPKYLNSKASV 215

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
            F K ++LY    A+   +K+ +          II+VEGYMD L L Q G+ NVV+ LGT
Sbjct: 216 FFQKRESLYAAHIAVREARKAGK----------IIVVEGYMDALILHQLGIGNVVALLGT 265

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ++T   L  LW +S  +++  DGD  G  A  KA  L L  +  G  + FV L   +DP 
Sbjct: 266 SMTSEHLTYLWDISTEVIVWMDGDTAGKMACVKAASLALSLIKSGCIIKFVNLDTCDDPY 325

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN---TPDERAELEIHLKNCINHIKD 417
                 G T    ++  +  L + +W  E    +      P++   L+  +K  I+ I D
Sbjct: 326 DICINKGITDVMAILDSAKLLSEFIWDYELSKVTSGSAIMPEQCVMLDARMKYYISKIND 385

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             +  YY +   ++++ L Q   ++   +          +        +   S  KG   
Sbjct: 386 SNIAKYYKKYFYNQVRNLQQYSNSKSQIFDS---NGLVKKLVVNQFDNMTTESFSKGYNQ 442

Query: 478 KKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVE--QKYFL 533
            +           ++  P +L     + +       +N L +L   + +  +        
Sbjct: 443 LRAVN-------IIMEFPELLDNPIIFDQFTKFHISDNNLYELQQHILNIKIALCDSVMS 495

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +   L + G   L+  + +++      +  +     D     ++ +       +L  
Sbjct: 496 KNVLLLELQKAGLSHLIDYVFKKMVGFKYNTTLSHDKKNDHLAISKKEIEKI----MLVE 551

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           Q   ++++I  +   G+      L      +  ++ ++
Sbjct: 552 QLRYLQEEILDLRLSGKDSLAEKLSHQAQAIDTRLREL 589


>gi|254527227|ref|ZP_05139279.1| DNA primase catalytic core, N-terminal domain family
           [Prochlorococcus marinus str. MIT 9202]
 gi|221538651|gb|EEE41104.1| DNA primase catalytic core, N-terminal domain family
           [Prochlorococcus marinus str. MIT 9202]
          Length = 677

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 151/628 (24%), Positives = 271/628 (43%), Gaps = 53/628 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           +     I+++     I ++I +++   ++       ++   CPFHD+  PS   +  K F
Sbjct: 4   SIHPRTIQEVKEKADIVDVISEHIVLKKKGK-----EFVGICPFHDDTKPSMTVSPGKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EKKEKIQTDL 117
           YYCFSC   G+ + FL      +F + V  LA    + +  +        +K+   + +L
Sbjct: 59  YYCFSCGAGGNSIKFLMEFTRANFSDVVLSLAKKNNINVENLQGSQVEAYKKQLSRKDEL 118

Query: 118 IRLIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            +++ +  ++F   L N+   + + Y + +R +    I+ F+LGYAP+S   L  +L   
Sbjct: 119 YKILRITKNWFKSQLNNSMGVEAMKYLISKRNLSKKIIDDFELGYAPNSWNDLFNYLSNV 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           + F    I+ +GL I  DNS   YDRFRNRLI PI   +G+V+AFGGR+L  G+  KYLN
Sbjct: 179 EKFPSNLILASGLAISKDNSEKIYDRFRNRLIVPIHDMQGRVVAFGGRSL-DGQEPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ +F KGK L+ F  A + ++K              I+VEGY DV++L   G+ N V
Sbjct: 238 SPESEIFEKGKMLFAFEKASSNIRK----------RDKAIIVEGYFDVIALHSKGISNSV 287

Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352
           +SLGTAL +YQ+  L +   +  I+L FD D+ G+ A  + I  V    +        + 
Sbjct: 288 ASLGTALNKYQISQLCRCTDNKNIILNFDSDNAGVLATKRVIKEVESLSLHDQINLKILQ 347

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L+  +DPD F+  +    +  LI  S   +D    +  +++     +    +   L   +
Sbjct: 348 LNDFKDPDEFLNSHTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSENFQSVISSLVKLL 407

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           + I     R +Y Q + +RL +   +   +     R   K  R   +    ++       
Sbjct: 408 SKIPHSSTRTHYLQKVSERLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQP------ 461

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFL------- 522
                 +    E+ ++   ++ P +      E        ++  ++Q LW  +       
Sbjct: 462 --NEISRREKNESEIIFYYLHCPDLRLFIRNEFLKREINGFNTKDIQNLWEAISTVEQNN 519

Query: 523 --FSDFVEQKYFLPEEIHQRLCERGFGELLK--------QLDRQVRDAGLWSATTEANIV 572
                  E K    + + +         LL          L  ++ D    +      + 
Sbjct: 520 LGLYYLDELKQSNSQTLQKEFSSIDLISLLTDYFALYNPDLSNKINDFFNPNELFLTLLS 579

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +      L+L +++  L R +  IE 
Sbjct: 580 NPKVNLLGTLSLLEKYNSLKRCRHLIES 607


>gi|294101588|ref|YP_003553446.1| DNA primase [Aminobacterium colombiense DSM 12261]
 gi|293616568|gb|ADE56722.1| DNA primase [Aminobacterium colombiense DSM 12261]
          Length = 581

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 157/620 (25%), Positives = 267/620 (43%), Gaps = 46/620 (7%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            D ++ +   + I++++G YV   +   N         CPFH EKTPSF  +  +  ++C
Sbjct: 3   DDVVRQIKDRLDIADVVGDYVRLHKTGKNL-----KGLCPFHQEKTPSFIVSPDRQTFHC 57

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C   GD  SF+  + G +F E+++ LA  AGV +           K +  L  ++E +
Sbjct: 58  FGCGEGGDVFSFIMKIEGLNFREALELLAQRAGVEVE--TSPSHFSTKGKRSLYDIMETS 115

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
             F+  SLKN   +    YL+ RG++  +  +F++G+AP +  SL   L ++  S ++ +
Sbjct: 116 LFFYRSSLKNQGGRLAQQYLNSRGMNIESASLFEIGWAPPTWDSLWRLLFKEKVSLKEAL 175

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
           + GL+I+G      YDRFR R+IFPIR   G+++AFGGR +      KY+NSPE +L+ K
Sbjct: 176 DCGLVIEGTK--GIYDRFRGRVIFPIRDVSGRLLAFGGRIIDGDS-AKYINSPEGVLYSK 232

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            KNLY    A   +++  R          +ILVEGYMD + L   G +  V+SLGT+LTE
Sbjct: 233 RKNLYLLHMAKQEIREKNR----------VILVEGYMDAIRLHMTGYKEAVASLGTSLTE 282

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI- 363
            Q RLL + +    +C+D D  G  AA +    +      G  V  V L  G+DPD  + 
Sbjct: 283 DQARLLKRFTNNCFICYDSDTAGQEAAVRG---MYVLQQCGLDVRVVELLSGKDPDDLLS 339

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
              G+  F K +  +LPL  +L+      R    PD R      L   ++ +        
Sbjct: 340 NEEGRELFRKAMERALPL--VLFHLSLRQRQLENPDTRRAAAEDLLQGLSQL-SPIDIAP 396

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +  ++   L  L  +   +        K     +           ++      +      
Sbjct: 397 FLSSVSAALGILPYELQEQLESIRSAKK---SQKTISSEQSYKTMNNNENSSRNSVVDPL 453

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           EAAL+  L N    +  +     +  +   E + + + L + F       PE + +    
Sbjct: 454 EAALVYCLWND---IARRRVARPEEVFCLVENEDVKNMLAAIFS---GHSPESLEEHWRT 507

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                    L         +S   +            A++L    R      ++I +++ 
Sbjct: 508 LNETTPFAILAGGGAFCDSFSEDQDC---------WDAISLALERRREEEVFKKIHERML 558

Query: 604 QVT-AKGEAEKTAILISILH 622
           +   +K + E+ + +   L 
Sbjct: 559 RGEASKEDLEEYSKIAKKLK 578


>gi|146299550|ref|YP_001194141.1| DNA primase [Flavobacterium johnsoniae UW101]
 gi|146153968|gb|ABQ04822.1| DNA primase [Flavobacterium johnsoniae UW101]
          Length = 704

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 156/682 (22%), Positives = 267/682 (39%), Gaps = 89/682 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +     +  +IG +V+  R  +N     Y    PF DE++PSF  + +KG +
Sbjct: 17  ISQSTIDAVFETARVEEVIGDFVNLKRAGSN-----YKGLSPFSDERSPSFMVSPAKGIW 71

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
             FS    G+ ++FL      ++ E+++ LA    + +   +    +K    ++  +  +
Sbjct: 72  KDFSSGKGGNSVAFLMEHSHFTYPEAIRYLAKKYNIEIEETEQTDAEKAMTDVRESMYLV 131

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  +F   L N+ + +     Y  ERG  +  I+ F LGY+P++  +L +    KG+
Sbjct: 132 SEFAAKYFQDVLVNSEEGKAIGLSYFKERGFTNETIKKFALGYSPETWDALTKEALGKGY 191

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
             E +   GL I        +DRF+ R++FPI S  G+V+ FGGR L+  +   KYLNSP
Sbjct: 192 KLEFLESTGLTI--AREDRPFDRFKGRVMFPIHSMSGRVLGFGGRILTNDKKAAKYLNSP 249

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  F A   + K           +   LVEGY DV+   QAG++NVV+S
Sbjct: 250 ESDIYHKSKVLYGIFQAKQSIAKL----------NNCYLVEGYTDVIQFNQAGIENVVAS 299

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ +L+  I + FDGD  GLRA+ + IDL    L  G  V       GE
Sbjct: 300 SGTALTPDQIRLVNRLTKNITVLFDGDAAGLRASIRGIDL---ILEEGMNVRVCAFPDGE 356

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R          +  +               + N P ++A+L   +   I+ I D
Sbjct: 357 DPDSFARKNSHDDLVAYLESNSKDFIQFKASILMGEAKNDPIKKADLIRDMVTSISKIPD 416

Query: 418 QKLRYYYSQAIRDR-----------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPS--- 463
           +  R  Y Q                L QL QK + E +   +  +K  +      P+   
Sbjct: 417 RIQREVYIQECARIMEISEQVLVSTLAQLVQKDLAEANKKQKQEQKPFQVFRNPPPNTGF 476

Query: 464 -----------------QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL- 505
                                       +        E  ++  L+ + ++ ++      
Sbjct: 477 SGGDPEDPRTGPPDGYYPEEPGYPQETAEKVDILYGFERKVIEILLLYGSVEEDFEDVFL 536

Query: 506 -----------------------------ADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                                         ++   N   Q ++S L   + + + F  ++
Sbjct: 537 KADEEGNVKEVSEKRRYKVYEKIYLSLQEDEVELSNALFQNIFSGLIDYYNQNETFSLDK 596

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL---ALYKRFRLLSR 593
               L      E+   L    +                    +Q +       R+ L+S+
Sbjct: 597 YLMHLNPDFAQEVTNILMEDEKVTIHNWEGQNIFPKHKNVTIEQNVSDTIFSMRWFLVSK 656

Query: 594 QKEEIEKQIAQVTAKGEAEKTA 615
              +++  +     +  +E   
Sbjct: 657 IIHDLKHSLISDPQEDNSELLM 678


>gi|328676045|gb|AEB28720.1| DNA primase [Francisella cf. novicida 3523]
          Length = 605

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 162/596 (27%), Positives = 281/596 (47%), Gaps = 31/596 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               +FIK+L+    I +++ +YV+  +   N     Y  CCPFH+EKTPSF  N  K F
Sbjct: 4   KVSNNFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF CH  GD L+F+ ++    FIE+V+ LA I G P+       +  +KE++    I 
Sbjct: 59  YHCFGCHASGDALTFVKSINNLEFIEAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118

Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +  A  ++  +L N+  K +   YL +RGIDS+    F +GY+ +   ++ E  +    
Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSNLARFFGIGYSSEGWNNITELAKSINI 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           SEE +++ GL I  D   + YDRFR R++FPIR+ +G VIA+GGR +   + VKY+NSPE
Sbjct: 179 SEEILVDTGLAIKNDKG-SLYDRFRGRIMFPIRNIQGNVIAYGGRVIDDSDGVKYINSPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K   LY  +          +K +   ++  +++VEGYMDV+ L Q G    V++L
Sbjct: 238 TLVFQKNNILYGLYEYRE-----RKKQLPHLTNQSLVVVEGYMDVIGLAQHGFYAAVATL 292

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA ++   ++L++ +  ++LCFDGD  G +AA + I ++L  L    ++  + L +G+D
Sbjct: 293 GTAFSQNHAKILFRETNSVILCFDGDKAGQKAALRTIKILLPILDGNKKLKILTLPKGDD 352

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I+ YG   F   +  SL + D +     + R     + +AE+  +LKN +  + D 
Sbjct: 353 PDDYIKQYGLERFHAALDNSLAVADFVIDNLIQGRDLTKAESKAEVLENLKNFLLDVADN 412

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                 +  I D++    ++                  + +K     + +   ++ K   
Sbjct: 413 IYSESITATIADKIGIKVEQLKNLL-------------KIRKQNLLNVTKQQNIQQKKLT 459

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-- 536
           K  L E  +L  L  + A  +          +  ++   + +       E      E   
Sbjct: 460 KNLLLEEVILAELFVNLADFRLLQHTNDFEIFATSKNLDILAKSLKILKEDSSNQIEAVI 519

Query: 537 IHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
           + Q L E    + E   +L     +        +     +    ++      + RL
Sbjct: 520 LIQLLAEDYPDYREYFFELLSYGINNTQKKYAEDKYQEQMFVMLKRVENSSVKKRL 575


>gi|150026110|ref|YP_001296936.1| DNA primase [Flavobacterium psychrophilum JIP02/86]
 gi|149772651|emb|CAL44134.1| DNA primase [Flavobacterium psychrophilum JIP02/86]
          Length = 661

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 153/658 (23%), Positives = 274/658 (41%), Gaps = 61/658 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +     +  +IG +V   R  +N     Y    PF +E++PSF  + +KG +
Sbjct: 2   ISKATIDTVYETARVEEVIGDFVQLKRAGSN-----YKGLSPFSEERSPSFMVSPAKGIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
             FS    G+ ++F+      S+ E+++ LA    + +   +   E+KE+   +  +  +
Sbjct: 57  KDFSSGKGGNAIAFIMEHEHFSYPEAIRYLAKKYNIEIEETEQSQEEKEQASEKESMYLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  FF +++ N  + +     Y  ERG  +  I+ F LGY+P++  +  +    +G+
Sbjct: 117 SEFAAKFFQNTMMNTDEGKSVGLSYFKERGFTNETIKKFGLGYSPEAWDAFTKEGLGQGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
             + + + GL I        +DRF+ R++FPI+S  G+V+ FGGR L+  +   KYLNSP
Sbjct: 177 KLDYLDKVGLTILR-EDGKHFDRFKARVMFPIQSMSGRVLGFGGRILTNDKKAAKYLNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK K LY  + A   + K               L EGY DV+ + QAG++NVVSS
Sbjct: 236 ESEIYHKSKVLYGIYHAKQAIAKQ----------DNCFLCEGYTDVIQMQQAGIENVVSS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ +L+  I + FDGD  GLRA+ + IDL    L  G  V       G+
Sbjct: 286 SGTALTPDQIRLINRLTKNITVLFDGDAAGLRASIRGIDL---ILEEGMNVKVCTFPEGD 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF +          +  +               + + P ++AEL   + N I+ I D
Sbjct: 343 DPDSFAKKTPLNELLLYLENNAMDFIQFKASLLMKDAKHDPIKKAELIRDMVNSISKIPD 402

Query: 418 QKLRYYYSQAIRDRLQQ----LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           +  R  Y Q     +      LF               K  +   +    +     +   
Sbjct: 403 RIKREIYIQECSRIMDISEEVLFNTLAQLVQKDISEVGKKQKQEQKNQVFEVYKNENTAV 462

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQEL---------------------------- 505
           G         E  ++  L+ +  I ++    +                            
Sbjct: 463 GAKVDVLYELELKIIEILLLYGNIEEDFEDFVFKANEEGELLEIKEVNRYKVFQRIYLSL 522

Query: 506 --ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
              ++       + +++ L + F E + F  E+   RL      E+   +    + +   
Sbjct: 523 QEDEVELGTPIFKDIYNNLIAYFNENENFEIEQYLMRLSPELAQEVTTIIMDDEKTSLHN 582

Query: 564 SATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
               +  +    +   Q +    L  R+ L+++  EEI+  ++  T     E  ++++
Sbjct: 583 WEAQQIYVKQKDKTISQYVSETILTLRWFLVNKIIEEIKSNLSNATDSDNYENLSMVM 640


>gi|306820485|ref|ZP_07454119.1| DNA primase [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551471|gb|EFM39428.1| DNA primase [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 585

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 149/612 (24%), Positives = 280/612 (45%), Gaps = 47/612 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
               F++++     I ++I ++VD  +   N     Y   CPFH+EKTPSF  N+SK  +
Sbjct: 7   LDERFVEEVKNANNIVDVISKFVDLKKNGDN-----YKGLCPFHNEKTPSFVVNESKQIF 61

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIR 119
            CF C   G+ +SFL      SF E+V+ L   A +P        EK +     +  + +
Sbjct: 62  KCFGCGEGGNIISFLMKKENMSFNETVKYLCENANIPYKQTHTFTEKDKMELDEKKKMYK 121

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L      ++  +L+N  D     YL  RGID   ++ F LGY  D   S   +L++ G++
Sbjct: 122 LHVDLAKYYFQNLQNNLD-NSKSYLLNRGIDERTMKKFGLGYE-DRVSSSINYLKELGYT 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +E +I + +  + ++    Y  F  R+++PI   R +VIAFGGRT++ GE+ KYLNSPE+
Sbjct: 180 KEDMIHSMVFREKNDRM--YSIFFGRIMYPIIDRRNRVIAFGGRTMNAGETPKYLNSPES 237

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           ++F K   LY    A  Y  K             +ILVEGYMDV+SL + G+   ++SLG
Sbjct: 238 MIFKKKNELYGLNLANKYNSK------------RLILVEGYMDVISLIKNGIAGGIASLG 285

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+L +  + ++ + + ++ +C+D D  G +A  +A+D+       G   N + +   +DP
Sbjct: 286 TSLAKEHVEVIKRQNKKVFICYDSDTAGRKATLRALDM---FKEEGITANVIRIGDYKDP 342

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D F      + F +LI  ++  +  +      N   +   +R E        I   KD+ 
Sbjct: 343 DEFFSSKKSSDFMRLIKNAVSPLTFIIDDMGLNYDLSVHSQRLEFINLACEKIVECKDEV 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEH-------SGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
            + Y  + +        +    +          +    +   R   ++   + ++++  V
Sbjct: 403 EKEYQIKRLSQMTDTSIKAIGVKVYGEFFSPKRFKEQGQNETRFFKRQDIPKNVVKAKDV 462

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
               +K  +  E  L + ++ +P+ ++     L     + ++L++++   F    E+   
Sbjct: 463 VLVSNKISNPNEEKLKIMIMENPSFIKFVDDILELEDLNGDDLRQIYFQRFEY--EKMSI 520

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-VDVRQGYQQALALYKRFRLL 591
             E            +LL++L + V+ + + S   E +I +   +  ++ L   K+   L
Sbjct: 521 DGET----------EKLLRKLAKSVKFSSIQSQIEEIDILLKDERDIEKTLNNAKKRLEL 570

Query: 592 SRQKEEIEKQIA 603
            ++  EI++ + 
Sbjct: 571 LKKMSEIKESLK 582


>gi|21910054|ref|NP_664322.1| DNA primase [Streptococcus pyogenes MGAS315]
 gi|21904245|gb|AAM79125.1| putative DNA primase [Streptococcus pyogenes MGAS315]
          Length = 589

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 156/631 (24%), Positives = 271/631 (42%), Gaps = 52/631 (8%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I  +   + I ++IG+ V   R         Y   CPFH EKTPSF+  + + F++CF C
Sbjct: 2   ISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQFFHCFGC 56

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLIRLIEVA 124
              GD   F+       F+ESVQ +A   G+ L   P       + +     L+ L E A
Sbjct: 57  GKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNISPSQAVIASQHKHPNHALMTLHEDA 116

Query: 125 TDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
             F+H  L      +    YL +RG+D   IE F +G APD    L + L +K + E ++
Sbjct: 117 AKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK-YEEGQL 175

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYLNSPET 239
           + +GL    D S T YD FRNR++FP+   RG +IAF GR  +  +      KY NS  T
Sbjct: 176 VASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADTEKRQAKYKNSRGT 235

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           +LF+K   LY+   A   + K          +  + L+EG+MDV++  ++G +N V+S+G
Sbjct: 236 VLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYENAVASMG 285

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALT+  +  L +++ ++VL +DGDD G  A  K+++L+   ++       V +    DP
Sbjct: 286 TALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRIPNKMDP 340

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D F++ +   AF  L+ +S       +    +  + +    +      +   I       
Sbjct: 341 DEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIAQSPSIT 400

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            ++ Y   I D L       + +     R   +  R          L+  +L   K    
Sbjct: 401 AQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPMPKSLTA 458

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +  E+ L+  L++H  +L E      D  +D + L+ L+  L                 
Sbjct: 459 IAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------------- 504

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-SRQKEEI 598
            +      E+ ++++R   +    +   E  + ++         L KR +LL  R   + 
Sbjct: 505 HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAERDLHKQ 558

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            K++ + + KG  +    ++        ++ 
Sbjct: 559 GKKVRESSNKGYHQAALEVLEHFIAQKRKME 589


>gi|223985701|ref|ZP_03635748.1| hypothetical protein HOLDEFILI_03054 [Holdemania filiformis DSM
           12042]
 gi|223962312|gb|EEF66777.1| hypothetical protein HOLDEFILI_03054 [Holdemania filiformis DSM
           12042]
          Length = 589

 Score =  312 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 144/637 (22%), Positives = 262/637 (41%), Gaps = 54/637 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + I  +     I+ +IG YV   ++            CPFHD+  PS   +  K 
Sbjct: 1   MRLSDEEITAVRNSADIAEVIGHYVPLVKKGR-----SMACVCPFHDDHDPSLSISQDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLI 118
            Y CF C   G+  +F+      SF E+V ++A I+G  L   DP   K   +  +  L 
Sbjct: 56  IYKCFVCGAGGNVFTFVQNYEKVSFPEAVAKVAEISGYKLS-FDPSAFKTPVDPRKDALY 114

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           +++     + H+ L       +  YL  RGID   IE F++G+       L   L+ KG+
Sbjct: 115 KVLAETIRYTHYQLGAQAGTPVREYLANRGIDEATIEKFEIGWNGPG-DELLRFLQAKGY 173

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           +E+ ++ A ++   ++    +D F +R+ FPI  S G  I F  R++      KY+N+ E
Sbjct: 174 NEQDMVAANVVRLNES--GLHDVFASRITFPIHDSLGNPIGFTARSMDPEAQSKYINTTE 231

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ KG  ++N+  A    ++  R          ++L EG  DVL+  +AG+ NVV++L
Sbjct: 232 TDVYVKGHTVFNYHRAKQPSRQEGR----------VLLCEGVTDVLAFSRAGMDNVVATL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T+ QLRLL + S  +  C+DGD  G  A YKA  L       G  V  V    G D
Sbjct: 282 GTACTKEQLRLLRQCSLHLTFCYDGDKAGQNATYKAAKLAR---EAGFEVGIVSNPTGLD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD  +R +G      ++ + L  ++ +++  +         E+ E  + +++ I  + D+
Sbjct: 339 PDEILRQHGAEELRAMVRKELTWMEFVFQYLSTRYDLENYSEKKEFTLKVEDEIKQLSDE 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  ++  +          +  +          N+     K    RL  S   K     
Sbjct: 399 FDRQNFAHQLEQLTG-----FHLDLGAAPAPKPDNSGAGRVKTVPIRLNPSRDGKTN--- 450

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E  +L  ++     ++   ++L  +   N E Q+L   +             +  
Sbjct: 451 ----AEHLILALMLTRREAVEMFKEKLGFLL--NEENQQLAMMILDYSRSHPQLQIADFI 504

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E    + +  L     +      T E     +R           +  +L  +  ++
Sbjct: 505 STIDEETLRQKVLDL----SEWECPQFTPEVMDGAIR---------RLQRCMLEERINDL 551

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           ++QI +++     E  A L++   ++  ++     +E
Sbjct: 552 KQQILRIS---NPESQAALLNERMQLQRELRGYLDEE 585


>gi|224542126|ref|ZP_03682665.1| hypothetical protein CATMIT_01301 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524963|gb|EEF94068.1| hypothetical protein CATMIT_01301 [Catenibacterium mitsuokai DSM
           15897]
          Length = 588

 Score =  312 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 147/629 (23%), Positives = 280/629 (44%), Gaps = 46/629 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I ++   + I +++GQY++  ++  N     Y A CPFHD+  PS   + S+  
Sbjct: 3   RLSQEKIDEIRQSVDIVDVMGQYLELHKKGKN-----YMAICPFHDDNHPSLSISQSRQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIR 119
           Y CF C   G+  +F+   L   F+E+V ++A    V +    ++ ++ K ++    L  
Sbjct: 58  YKCFVCGNGGNVFTFIQEYLKVPFVEAVMKVAEFGHVDMSGYSLEKRVVKVDEALAPLYD 117

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +   A   + + L     K+   YL  RG D   I+MF +GYAP+    L E  +++G++
Sbjct: 118 MHAFALKLYMYYLYTQSGKQALDYLRHRGFDDDLIKMFGIGYAPEKS-ILHERFQKEGYT 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT-LSKGESVKYLNSPE 238
           E   +++GL+     +   YDRF +R++FP+    G+V+ F GR    + ++ KY+NSPE
Sbjct: 177 EVAQVKSGLV---LENERHYDRFHDRVMFPLYDEFGKVVGFSGRVYKVQDKNSKYMNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + +F KGK LYN+  A   ++           + F+ + EG+MDV+++ +A   N ++ +
Sbjct: 234 SDIFIKGKTLYNYHRAKEAVR----------QAGFVYINEGFMDVIAMHRAHHDNCIALM 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT+  LR+L +++  I LC DGD  G  AA K+ DL       G  V  VLL  G D
Sbjct: 284 GTALTKDHLRMLKRMTRTIHLCLDGDMAGQAAAMKSSDL---LTSQGFEVKIVLLPDGRD 340

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD  +   G    + ++ ++L  +D +   E         ++R  L +     I  I+D+
Sbjct: 341 PDEILSTEGIEGLDAVLKDTLSPIDFMMAFECSRLDLRNYEDRKTLLVKACEKIAKIEDR 400

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R +Y   +        +    +        +   +       SQ  +++   +  +  
Sbjct: 401 IDRGHYIAKLSSLTDFPKEIIEEQLLNSSAILEHREQF------SQNRIETIQDQRPILD 454

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           K +L E  LL  ++N   +      +   +   N+  + L +++   +   K      + 
Sbjct: 455 KYTLAEKNLLFYMLNDRQVSDIYEAKAGFMH--NDTYRALAAYIRDYYRTHKTMDVANLI 512

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            ++       L+  L      +       E     V   Y   +    +    + +++E+
Sbjct: 513 DKIGSS-HSALVNALTDIAECSLPLPYQKE-----VIDDYIARITENTK----NIREQEL 562

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           ++Q   V A       A ++  L ++  +
Sbjct: 563 QQQFKDVLA---PSAKAEILQKLIDLKKE 588


>gi|281491018|ref|YP_003352998.1| DNA primase [Lactococcus lactis subsp. lactis KF147]
 gi|281374776|gb|ADA64296.1| DNA primase [Lactococcus lactis subsp. lactis KF147]
          Length = 637

 Score =  312 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 160/673 (23%), Positives = 269/673 (39%), Gaps = 84/673 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           +   + + DL   + I++LI QYV   R   N     Y   CPFH EKTPSF+ N  KGF
Sbjct: 3   SLDTEVVNDLKSKVNIADLISQYVALSRTGKN-----YIGLCPFHGEKTPSFNVNAEKGF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   GD + FL       F+++V+ LA  AGV L + D + E+K      L  + 
Sbjct: 58  YHCFGCGRSGDAIEFLKEYNQVGFVDAVKELADFAGVTLNISDDR-EEKNNPNAPLFEIN 116

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             A   ++  L +    +R   YL+ERGI    I+ F +G AP+    + ++L  K    
Sbjct: 117 NQAARLYNILLMSTELGERARKYLEERGITDDVIKRFNIGLAPEENDFIFKNLSNK---F 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238
           ++ I A   +   ++   +D F NR++FPI +  GQ I F GR   + +    KY+N+  
Sbjct: 174 DEEIMAKSGLFHFSNNKVFDAFTNRIMFPITNEYGQTIGFSGRKWQENDDSKAKYINTSA 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K   L+N   A   + K             + L+EG+MDV++  +AG+ NVV+S+
Sbjct: 234 TTIFDKSYELWNLDKAKPTISKQ----------HEVYLMEGFMDVIAAYKAGINNVVASM 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE  +R L +++ + VL +DGD  G  A YKAIDL     I  + V  V +  G D
Sbjct: 284 GTALTEKHVRRLKQMAKKFVLVYDGDSAGQNAIYKAIDL-----IGESAVQIVKVPEGLD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD + + YG      L+                  +      + +    +   I  +   
Sbjct: 339 PDEYSKNYGLKGLSALMETGRIQPIEFLIDYLRPENLANLQTQLDFIEQISPMIAKLPSI 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS--------- 469
             +  Y + + + L       + +     R       H      +  L +S         
Sbjct: 399 TAQDAYIRKLVEILPDFEYNQVEQAVNLRRENMTITDHPVSNLEASSLTESFTDENDYSS 458

Query: 470 ----------------------------------SLVKGKLSKKPSLREAALLLTLINHP 495
                                               V+     +    E  LL  +I H 
Sbjct: 459 LESVMPVDFEEAYYENNVKTQQTYRRSELARVIQPSVQVPKLSRSEKAEEMLLHRMIYHS 518

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
           ++L++  Q+  + R+ +   Q L+  +  + +  +      +   L +       + L  
Sbjct: 519 SVLKKFSQD-ENFRFVHKRYQDLFDKILLEAMVYEQIDESHLASELSDEE-----RSLFY 572

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           Q+    L    +   I D+   +   +           + EE+ +Q+A     G  E+  
Sbjct: 573 QIISLDLPDTASSQEINDLVSIFSNEME--------QIKFEELIQQLATAEKAGNKERVL 624

Query: 616 ILISILHEVHIQI 628
            L   +     ++
Sbjct: 625 ELTLQIINQKKKL 637


>gi|283769574|ref|ZP_06342470.1| DNA primase [Bulleidia extructa W1219]
 gi|283103842|gb|EFC05228.1| DNA primase [Bulleidia extructa W1219]
          Length = 578

 Score =  312 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 151/634 (23%), Positives = 269/634 (42%), Gaps = 62/634 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           N P++ I D+     I ++I  Y+    +        Y A CPFH++  PS      K  
Sbjct: 3   NIPKNIINDIRTKANIVDVIRHYIPVSEKGNG-----YVAVCPFHNDHDPSLKIAPDKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   G    F+      SF E+V+++  + GV +  V  K   ++     +  ++
Sbjct: 58  YHCFVCQAGGSVFQFVQDFEKVSFPEAVEKVGELVGVHVQSVPKKEVVEDPQVKRIKEVL 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             AT +F + LK     +   YLD RGID      F +GY P     L  +L+ KG+ EE
Sbjct: 118 SDATSYFSYILKTTDGAKAKEYLDSRGIDEETALKFGVGYNP--YQKLYPYLKAKGYQEE 175

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           ++ +A L+          D F+NR+ F I   +GQ I +  R++      KY+N+  T++
Sbjct: 176 EMSQANLIRYYHGHFE--DVFQNRITFAIHDRQGQSIGYTARSMDPKSESKYINTDNTLV 233

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHKG  +YN+  A    +++ +          + L EG MDV++L QAG++NVV +LGTA
Sbjct: 234 FHKGNVIYNYHRAKTPARRAGK----------VYLCEGVMDVIALTQAGIENVVCTLGTA 283

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T+ Q+RLL  ++P +V+ +DGD  G  A+YK   L       G     V      DPD 
Sbjct: 284 CTDDQIRLLATMAPVLVIAYDGDHAGQNASYKVAKLAQSI---GLECRIVKNIDHLDPDE 340

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             R  G+ A EK + +    ++     + ++ + +   ER ++   +   I ++KD+  R
Sbjct: 341 IYRQKGQEALEKFLKQEESFMEFFMDYQLKSANLSNYSERKKVGQEIAFEIQNLKDEVDR 400

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
            Y+   + ++L   F                       K    +    S           
Sbjct: 401 RYFQHLLEEKLGLNF-----------------------KVSVNKTRTKSTSIKTKVDGVE 437

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           + E  +L  +I +P  +Q   +EL  +   +     +   L +    ++   P E+ +  
Sbjct: 438 VAEYEILAIMIQYPKAIQIFDEELGFL--TDATRNNVALTLVNRLHRRQEIQPIELLESA 495

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                            +   W+   E N+ D ++   +AL    + + L  Q +++   
Sbjct: 496 QSDE-------------ERTCWTRLIEMNVKDYQEEELRALFDRIKMKQLDDQVKQLYDS 542

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +       +     +L+    EV  ++ +++S E
Sbjct: 543 L--SNPSLDEATRKLLLQKYSEVKRELGRLKSSE 574


>gi|325955566|ref|YP_004239226.1| DNA primase [Weeksella virosa DSM 16922]
 gi|323438184|gb|ADX68648.1| DNA primase [Weeksella virosa DSM 16922]
          Length = 643

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 153/656 (23%), Positives = 280/656 (42%), Gaps = 50/656 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I ++     +  +IG +V   R   N          PF +EKTPSF  +  K  +
Sbjct: 2   ITQKTIDEIFDTARVEEVIGDFVQLKRAGANL-----KGLSPFANEKTPSFVVSPGKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV---VDPKIEKKEKIQTDLIR 119
             FS    G+ ++FL  +   S+ E+++ LA    + +       P+  +  K +  L  
Sbjct: 57  KDFSSGRGGNVVTFLMEIEQFSYPEALRWLAKKYNIEVEEDRSFAPENNEAIKNKESLFL 116

Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           + E A  FF   L    +       Y  ERG     IE F+LGY+P +  +      +KG
Sbjct: 117 ITEAANKFFQQQLHQTEEGISIGLSYFKERGFTKQIIEKFQLGYSPSAWDAFANFAEEKG 176

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235
           +++  I ++GL+I        +DRFR R+IFPI S  G+ + FGGR L        KYLN
Sbjct: 177 YAKNIIEQSGLVI--YKEDKKFDRFRERVIFPIFSYSGRTLGFGGRVLRNDRKNAAKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE  ++HK K LY  + +   + +           +  +LVEGY DVL+L QAG++NVV
Sbjct: 235 SPENEIYHKSKVLYGLYQSKQSIIRQ----------NQCLLVEGYTDVLALHQAGIENVV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           SS GTALT+ Q+ L+ +L+P I + +DGD  G++A+++ IDL    L     V  +L   
Sbjct: 285 SSSGTALTKEQILLIKRLTPNITILYDGDAAGIKASFRGIDL---ILEQEMNVRVLLFPD 341

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF + + +   +  I E+         +     + N P ++AEL  ++   I  I
Sbjct: 342 GQDPDSFAKNHTEEEIKNFIDENATDFIQFKAKILMEDAENDPIKKAELTRNIVESIALI 401

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +   +  Y +     +Q   +    E + Y +   +    +++K  S  L        +
Sbjct: 402 PNLIQQEIYIEETAKLMQVSNKVLFKELAQYTKKINQ-QPTKEEKKDSAELTIQKSNLNE 460

Query: 476 LSKKPSLREAALLLTLINHPA----------------ILQEQYQELA--DIRYDNNELQK 517
           +     + E  ++  ++                    +++E   +L   ++++ N   QK
Sbjct: 461 VVDPIVIVEEKIIQLILQFGDKVIQLHDENNEQYETTVIEEVLDQLEADNLQFQNPFYQK 520

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           +   +   + + +    +   + + E       + L      +  W    +  I D+   
Sbjct: 521 ILDDVIVGYEKDELRTSDFFIKIMDEEITNFTSQALISPYHVSKNWKEKQQIYIKDIEHN 580

Query: 578 YQQALA---LYKRFRLLSRQKEEIEKQIAQVTAKGE-AEKTAILISILHEVHIQIH 629
             + +    L  +   +  + +++         +GE   +    I  L ++   ++
Sbjct: 581 IDKEVKDTLLNFKSLYVQNEIKKLLPLTQSSDFEGEVRIEILEKIMRLTKLKNYLN 636


>gi|298246438|ref|ZP_06970244.1| DNA primase [Ktedonobacter racemifer DSM 44963]
 gi|297553919|gb|EFH87784.1| DNA primase [Ktedonobacter racemifer DSM 44963]
          Length = 728

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 171/745 (22%), Positives = 278/745 (37%), Gaps = 142/745 (19%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
             I+ +   + ++  I   V   +             CPFH+E+TPSF+       + CF
Sbjct: 3   SIIETIKAKVDVAEEISLVVALHKSGK-----TLKGLCPFHNERTPSFYVFPETQTWRCF 57

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDLIRLI 121
            C+  GD  SF+    G  F E+++ LA  AGV L   +    +  +     +  L +L 
Sbjct: 58  GCNEGGDVFSFVQKQQGLEFRETLEYLAQKAGVALEEQESHNAEASRETSAAKERLRQLN 117

Query: 122 EVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           E A  +FHH  L++   +    Y+  RGI +  +  F LGY PD    L  +L  +G+SE
Sbjct: 118 EDALLWFHHMLLRSREAEEARAYIQSRGISADTVITFGLGYVPDQWDGLSRYLLSRGYSE 177

Query: 181 EKIIEAGLLIDGDN---------------SATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
            +++  GL  + +                    YD FRNR+IFPIR  RG+VI FGGR L
Sbjct: 178 RELVVGGLAREREMGSSDRSGRESGEGNTENGIYDYFRNRIIFPIRDIRGRVIGFGGRAL 237

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
                 KYLNSP+T+LF K   LY    A + ++           +  +I+VEGY+D + 
Sbjct: 238 -GDGKPKYLNSPQTLLFEKNTVLYALDMARDAIK----------QARQVIIVEGYVDAII 286

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID--------- 336
             Q G +  V+ +G+A+TE  ++ L K++ ++ L  D D  G  A    I          
Sbjct: 287 AHQYGTRQTVACIGSAITEKHIQQLKKMTKQVTLALDPDAAGSAATEHGIQEALKGFDRT 346

Query: 337 -----------------------------------------LVLCHLIPGNRVNFVLLSR 355
                                                    ++         +N + L  
Sbjct: 347 VVPVPLPAGAADRQWPREGRKGGNNVHEQKGSYAGKQQARGIIRLEEQVDAEINVLQLPL 406

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           GEDPD FIR     A+   +   LPLVD  +  +T +     P  + E    L   I  I
Sbjct: 407 GEDPDEFIRRDHT-AWLYAVGHPLPLVDYFFVVKTADLDIREPVGKTEAAKRLLPVIGMI 465

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR---------- 465
            D+  R  Y + +   +    +    E     R  +  +       P  +          
Sbjct: 466 SDRIKRDAYIRKLARLIAIDERSLYAELQHTLREQRATSVTATFSAPLDKRNTDSGKGFG 525

Query: 466 -------LMQSSLVKGKLSKKPSLREAA-----------------------------LLL 489
                  L    + +         REA                              L+ 
Sbjct: 526 KEQAGSVLGAPPIGEQGHPGSGQKREARTNGLVGAQRHGTSGILDRGEANRLKWEDYLIG 585

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFGE 548
            L+ +P +    Y  + D  +   + ++L+  L+S + +       +   Q +       
Sbjct: 586 LLLQNPGLSPYVYGIIDDGDFAGTDTRELYHILYSVYQQRASSPSLQSFDQYVP----AS 641

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           L   L+R      + +    A    + +   Q     KR R L +   E++  I + TA 
Sbjct: 642 LWDALNRARECVDIETPRDGAG---LVKEAVQCATRLKRAR-LVQLNTELQFLIREATAA 697

Query: 609 GEAEKTAILISILHEVHIQIHQIES 633
           G+A+    L   L E+H Q+H I+S
Sbjct: 698 GDAQTRRQLQQRLLEIHRQLHTIDS 722


>gi|320108952|ref|YP_004184542.1| DNA primase [Terriglobus saanensis SP1PR4]
 gi|319927473|gb|ADV84548.1| DNA primase [Terriglobus saanensis SP1PR4]
          Length = 592

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 157/641 (24%), Positives = 256/641 (39%), Gaps = 65/641 (10%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            +F + +     I  +IG+YV   +        +Y   CPFH EK+PSF  N +  ++YC
Sbjct: 3   DNFAQTVKAQADIVKIIGEYVKLRKSGAQ----NYSGLCPFHKEKSPSFSVNATHSYFYC 58

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIRLI 121
           F CH KGD  SF+  L    F E+V+ +A   G+PLP      P+  +   I+  L+ + 
Sbjct: 59  FGCHEKGDVFSFVQKLENIPFPEAVRVVAQKCGIPLPKREFNSPEEARDAGIRRQLLDIH 118

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E AT +F   LK+    R   YL  RG+    I  F++GYAPD   ++R+ + +    E 
Sbjct: 119 EAATQWFEGHLKSPEAARAREYLTSRGVPPETIAKFRIGYAPDDFNTMRDAMAKLFNDEA 178

Query: 182 KIIEAGLLIDGDNSAT-----SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYL 234
                       +         Y RFR R+ FPI + +G+VIAF  R L   E    KY+
Sbjct: 179 MRASGLFSSKEQDDNGRPRGSLYARFRKRITFPIANEQGRVIAFTARALDSDEKSGAKYM 238

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET L+ KG  L+N   A   ++             F +LVEG MD +S+  AGVQ V
Sbjct: 239 NSPETPLYTKGNVLFNLDKAKAAIRAQ----------DFALLVEGQMDCISVFMAGVQPV 288

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           +++ GTA TE Q+RLL + + R+V+ FD D  G  AA K++ L          V  V L 
Sbjct: 289 IATSGTAFTEAQVRLLSRFTKRVVVNFDPDTAGANAAEKSLSL---LTEEDFEVKVVTLE 345

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G DPD ++R +G  A+   +  + P  + L +R        T + + +   +L   I  
Sbjct: 346 GGLDPDRYVREHGIKAYADALRTAKPHAEYLIERARVLYPQKTAEAKVKAANYLLPHIRR 405

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           +     R  +      +L         E                         +   V+ 
Sbjct: 406 LPSAIQRQDFVTNAAQKLGIDDALLREELRQAAA------------------ARVESVRS 447

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                    E  LL  L+  P                +       + +       +    
Sbjct: 448 SGRDALHETERILLRALVR-PE--------------TDPARIHAATEISMHPEWVEGLTS 492

Query: 535 EEIHQRLCERGFG----ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             + +RL          +     +  +  A +     E +   +    + AL   +R R+
Sbjct: 493 GTLLERLANSPVTDNPLDAASGAEEHLILARVLENEAETDSNALVLDVRNALNTLERGRM 552

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             R++ E+   +A    + ++E      +   ++   +  +
Sbjct: 553 -ERRQRELRALMADAERRNDSEAGKQFAAEAAQIARSLRLL 592


>gi|229496583|ref|ZP_04390297.1| putative DNA primase [Porphyromonas endodontalis ATCC 35406]
 gi|229316480|gb|EEN82399.1| putative DNA primase [Porphyromonas endodontalis ATCC 35406]
          Length = 679

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 166/684 (24%), Positives = 284/684 (41%), Gaps = 73/684 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                 + ++    I +++  +V   R        DY   CPFH ++ PSFH + SK   
Sbjct: 2   IDEVTKQKIIDTAHIVDVVSDFVSLRRAG-----VDYIGLCPFHADRRPSFHVSPSKNIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIRL 120
            CFSC   G  +SFL  L   +F E+++ LA   G+PL      P+  ++   Q  +  +
Sbjct: 57  KCFSCGEGGTPVSFLMKLEKMTFPEALRYLARKYGIPLEEREESPEERERRNQQESMYLV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A ++F   L    + R     Y   RG+    IE F+LGYAP S  +L     Q G+
Sbjct: 117 QKFAAEYFGKQLLEGDEGRSIALSYFHSRGVTEEVIEKFQLGYAPSSHNALLTAATQAGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSP 237
           + + +   GL  +     +  DRFR R++FP+ S  G+++AFGGR +    +  KY+NSP
Sbjct: 177 NAKYLYATGLCFEPSEGRSGGDRFRERIMFPVHSVSGRIVAFGGRIMGKSDKMAKYINSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E I++ K + LY  + A   + +             + LVEGYMDV+++ QAG++NVV+S
Sbjct: 237 ENIIYSKSRELYGLYFAKKAIAQK----------DKVYLVEGYMDVIAMHQAGIENVVAS 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q+RL+ + S  I + +DGD  G++AA + IDL    L  G  +  ++L  GE
Sbjct: 287 SGTALTREQIRLIRRFSKNITVLYDGDAAGIKAAIRGIDL---LLEAGMHIRVLVLPAGE 343

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R      F   I E             ++   ++P  RA +   L + I  I D
Sbjct: 344 DPDSFSRSRTIDEFNDYISEHEVDFITFKTGLFQDDMASSPGRRAAVINDLVHSIGLIPD 403

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGY------GRYWKKNARHRDQKGPSQRLMQSSL 471
              R  Y+Q++   L    +  + +          GR  ++ AR R      +R      
Sbjct: 404 TIERSVYAQSVAQTLHIDEELLLRQVKIARSNHLMGRATEEQARSRQAALQEERRRNEEK 463

Query: 472 VKGKLSK-------------------KPSLREAALLLTLINHPA---------------- 496
              + +                     P+ +E  LL  +I +                  
Sbjct: 464 EHEEDTPLSETEDEDLPSDTHTLPDIPPTRQEIELLRLIIRYGERLIPIDNDDGTQSDMP 523

Query: 497 ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-----RLCERGFGEL 549
           +    Y+     +I       QK+ +         + F P          R+ +     L
Sbjct: 524 LALYIYEWFGAEEIEKSTPLFQKIVNESIEQLSTSESFRPAHYFANHPEPRIADLTLDLL 583

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY--KRFRLLSRQKEEIEKQIAQVTA 607
             +               E N  ++     ++L      R   + ++ E+  + ++    
Sbjct: 584 SDRYQLSRAQRQALGIYNEDNSPELDTIINESLHAIDALRVECILQEIEQCRQSLSDAQQ 643

Query: 608 KGEAEKTAILISILHEVHIQIHQI 631
            G+  +   L+  ++E++++  +I
Sbjct: 644 HGDGSQIMTLLQRINELNLKKKEI 667


>gi|67459750|ref|YP_247374.1| DNA primase [Rickettsia felis URRWXCal2]
 gi|75535860|sp|Q4UJT0|PRIM_RICFE RecName: Full=DNA primase
 gi|67005283|gb|AAY62209.1| DNA primase [Rickettsia felis URRWXCal2]
          Length = 595

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 171/633 (27%), Positives = 300/633 (47%), Gaps = 50/633 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    +F + L   I IS+++ Q V   R+      G+Y   CPFH EKTPSF  +DSK 
Sbjct: 1   MRVAPEFYELLRNRINISDVVRQKVALTRK-----SGNYVGLCPFHQEKTPSFTVSDSKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F+YCF C   GD + F S + G S+ ES  +LA   G+ +P +  K ++  +   +++ +
Sbjct: 56  FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLATDYGIEIPKLTAKQKEFYEESDEILNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L       +  YL ERGI    ++ F +G+AP +    +    +     
Sbjct: 116 LELANKFFRTQLT----PEILNYLHERGITEETVKEFSIGFAPKNNKFEKFFHDKNIDII 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +      +    +     Y+ F NR+  PIR+   +++ FGGR L +G   KYLNSPET 
Sbjct: 172 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETT 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY    A++   K           +  ILVEGY DV++L QAG    V+SLGT
Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSEAVASLGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ++TE  L  LW+    I+LC DGD+ G++A+ + I+L L  +    +++F+ L  G DPD
Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPNGLDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +   G   F KLI + + L +M+W  E   +SF T +E+A LE +LK+  + I D  L
Sbjct: 339 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKSFKTAEEKANLEKNLKDYCSKISDSNL 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y +  ++++ Q                  N   + +K  ++    + ++      + 
Sbjct: 399 KASYYRFFKEQIWQ------------------NLVTKQKKATTKNSNLAPIISSHGYSEL 440

Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            + E A    L+  P IL+E      + ++ ++N  L++  ++  ++ ++       EI 
Sbjct: 441 EMLEHAFCALLVKFPIILEEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNN-VEASEIT 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +  F ++   L +        S       +D+   +     L+K++ L++ Q +E 
Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNIRLDLLWQW-----LHKKYYLINLQ-QEY 553

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
              I       + EK  +    + ++  ++  +
Sbjct: 554 SITINSTDN-HDFEKVLLYKKEILKIANELQVL 585


>gi|302335782|ref|YP_003800989.1| DNA primase [Olsenella uli DSM 7084]
 gi|301319622|gb|ADK68109.1| DNA primase [Olsenella uli DSM 7084]
          Length = 646

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 147/671 (21%), Positives = 260/671 (38%), Gaps = 78/671 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              +  + +     I  L+G+ V+   R     +GD+W CCPFH EK+PSFH N + G +
Sbjct: 2   ITDEDRERVRQATDIVRLVGETVELRER-----RGDFWGCCPFHHEKSPSFHVNPATGLW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   GD  +++    G  F ++++ LA  AG+ L   +         +  L+  + 
Sbjct: 57  KCFGCGEGGDLFAYVMKREGLDFPDAIRYLADRAGIEL-QEERGAAGHGPKRNRLVECLA 115

Query: 123 VATDFFHHSL---KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            A  F+   L   ++        YL  RG  S     + LG+AP    +L  HL  +GF+
Sbjct: 116 EAEAFYTTQLLRGRSEGAGVARGYLAGRGFGSAVCRRWGLGFAP-GHGALAAHLLGRGFT 174

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            ++++ A L ++G +     DRF +R++FPI    G+ I FGGR L      KYLN+ ET
Sbjct: 175 RQEMVAADLALEGRSGVR--DRFFDRVMFPIHDELGRSIGFGGRVL-ADAKPKYLNTKET 231

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKGK+L+ F  A + +           ++   I+ EGY DV+S+ +AG  NVV++LG
Sbjct: 232 AVFHKGKHLFAFDRAKDSM----------VATGEAIVCEGYTDVISMHEAGFTNVVAALG 281

Query: 300 TALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           TALT   ++++      RIV  FDGD  G +AA +A+  V      G  +  V L   +D
Sbjct: 282 TALTLDHVKMIERFAKSRIVCMFDGDAAGQKAAERAVQFVD---KTGADLLCVTLPDNQD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P  F+   G  A   +I  + PL++ ++ +       + P  R +    +   +  +K  
Sbjct: 339 PAEFLADKGAGALRPIIDAARPLMEFVFDKRMATYDLSVPGRRVQAMDDMAALLAPLKGS 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L   Y+  + D L     +             +          +  L            
Sbjct: 399 ILLDGYATQLADMLGADLGEVKRLVREKPVASPRAGGRSQGMRRADALAVPPPPPSSEHV 458

Query: 479 KPS--------------------------------------LREAALLLTLINHPAILQE 500
                                                    + E  LL  L +HP  ++ 
Sbjct: 459 AIHASGGEQPYDHQPFDDGGEATGAPVPSLAMLSSDERMRVVAERELLSMLASHPDAIRP 518

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
             + +A   + +   + +   + +                +              ++  +
Sbjct: 519 HAERIAGFTWTDARYESMAWAMLATPEGTPPADVVAAASGVVAD---------APRILAS 569

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
           G    T+  +  D        + L+ +     R+  EI+ ++   +          L   
Sbjct: 570 GSLEVTSRLSNADKVSFLLDTVELWSK----RREVREIKARLRSASTSTPDAAAIGLFQR 625

Query: 621 LHEVHIQIHQI 631
              +  +I ++
Sbjct: 626 ATGLQRRIGEL 636


>gi|327398657|ref|YP_004339526.1| DNA primase [Hippea maritima DSM 10411]
 gi|327181286|gb|AEA33467.1| DNA primase [Hippea maritima DSM 10411]
          Length = 562

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 158/622 (25%), Positives = 273/622 (43%), Gaps = 70/622 (11%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           +D ++++   + I + I  YV   +R +N     Y+  CPFH EKTPSF  N   GFY+C
Sbjct: 2   KDIVEEIKKRVDIVDFISGYVSLKKRGSN-----YFGLCPFHHEKTPSFSVNPKGGFYHC 56

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C   GD ++FL  +    F E+++ LA    +P+ +      K+      L  +  +A
Sbjct: 57  FGCGESGDVITFLMKIENLDFKEAIRELAKRYNIPIHI------KERSKNDALFEIHSIA 110

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
             +F   LK   +K    YL  R I+  AIE+FK+G+AP+S    +     K    ++  
Sbjct: 111 EKYFFEKLK--LNKTALDYLKNRQINDDAIELFKIGFAPESSELEKIL---KKEGFKEKE 165

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETILFH 243
                I    S   ++RF NR+IFPI++  GQ IAFGGR L+  ++  KYLNSPET +F 
Sbjct: 166 LINSGIFIQGSRGVFNRFSNRIIFPIKNEHGQTIAFGGRILNDDKTKAKYLNSPETPIFS 225

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K K L+    A + ++K          +  +I+ EGYMD L L  +G++N  ++LGTAL+
Sbjct: 226 KQKVLFGLNLAKDEIRK----------TKEVIVTEGYMDCLRLQISGIKNSTATLGTALS 275

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
            + + +L +++ +I + +D DD G RA  ++       L    +   V+L +GEDPDSFI
Sbjct: 276 RFHINILKRMADKIYMNYDADDAGFRAILRSA---PTILSSEMKPFVVILDKGEDPDSFI 332

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R   K A+ K +  +      +            P E+      LK  I  +++  L+  
Sbjct: 333 RNNSKEAYIKKLSSAKDYFSYIIDFIKNKYDIEHPSEKMRAIEELKPIILSVQEPILKAA 392

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y+             ++ + + +                            +     + +
Sbjct: 393 YTSKASRVFNVSEDAFLAKTASF----------------------------EFLSSITKQ 424

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQK-LWSFLFSDFVEQKYFLPEEIHQRLC 542
           EA LL  ++    ++    ++L D + +   LQK L+      ++  + F  E   + L 
Sbjct: 425 EA-LLSIILRDIELMA-WIEDLDDFKDEFEGLQKELYLNAVRFYLSGEEFSIEAFEKNLS 482

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +           +++    +    T+ N    R+     L    +   L +Q   I+++I
Sbjct: 483 DS---------QKKLFYKLISLPQTDINERYQRRKVLLYLLAQFKLDKLKKQLRIIQQKI 533

Query: 603 AQVTAKGEAEKTAILISILHEV 624
            +       E+     S + EV
Sbjct: 534 QENPKSEFFEEYNKTFSEIKEV 555


>gi|298492187|ref|YP_003722364.1| DNA primase ['Nostoc azollae' 0708]
 gi|298234105|gb|ADI65241.1| DNA primase ['Nostoc azollae' 0708]
          Length = 636

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 152/652 (23%), Positives = 273/652 (41%), Gaps = 43/652 (6%)

Query: 1   MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           M  P    D I+++     I +L+ +YV   +R        +   CPFHDEK+PSF  + 
Sbjct: 1   MQIPRLHPDTIEEVKHRADIVDLVSEYVVLRKRGKV-----FVGLCPFHDEKSPSFTVSP 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---- 113
           SK  YYCF C   G+ + FL  L    F E V  LA    VP+  ++P+  ++ +     
Sbjct: 56  SKQMYYCFGCQAAGNAIKFLMDLGKYQFTEVVLDLARRYQVPVKTLEPEQRQELQHQLSL 115

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDER-GIDSHAIEMFKLGYAPDSRYSLREH 172
           +  L  ++     F+ H+L+ +  ++   YL E     +  I+ F LGYAP    +L  +
Sbjct: 116 REQLYEVLASTAQFYQHALRQSLGQKGMQYLQEHRQFKTETIQQFGLGYAPAGWETLHRY 175

Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
            +  K +  + + +AGL+    +    YD FR+RL+ PIR  +G+VIAFGGRTL   E  
Sbjct: 176 LVEDKHYPVQLVEKAGLIKPRKDGGGYYDVFRDRLMIPIRDIQGRVIAFGGRTL-TEEQP 234

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KYLNSPET LF KGK L+    A + + K              ++VEGY D ++L  AG+
Sbjct: 235 KYLNSPETELFSKGKTLFALDHAKDGISKL----------DQGVVVEGYFDAIALHAAGI 284

Query: 292 QNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348
            N V+SLGTAL+  Q+RLL + +   ++VL FD D  G+ AA +AI ++         ++
Sbjct: 285 NNAVASLGTALSMEQVRLLLRYTDSKQLVLNFDADKAGINAAERAIGEIATLAYKGEVQL 344

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
             + +   +D D ++  +    +++L+  +   ++       +++         ++   +
Sbjct: 345 KILNIPHAKDADEYLHSHTAEEYQQLLANAPLWLNWQIAEIIKHKDLRQATAFQKVTKEI 404

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD---QKGPSQR 465
              + +I +     YY     + L     + I                +    +    + 
Sbjct: 405 VKLLQNIVNSDTLNYYISYCAEILSLGDARLIPLRVENLLTQIAPTSVQSLPLRSRKQKL 464

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLF 523
                 +           EA LL   ++ P   Q    EL +  + +  +  +  W    
Sbjct: 465 KTPKLSLVTTERSLLEQAEALLLQIYLHCPEQRQVIIDELEERNLEFSLSHHRFFWQQSL 524

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ-GYQQAL 582
                       ++   L  +     L+  +  +  + L+    + N   +R     QA 
Sbjct: 525 EF-----PVEEVDLIFSLENK----YLELSEDLILISHLFHLNEKTNKEILRTPQVLQAT 575

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                  L  ++     +   +     E EK       ++   +++ +++ Q
Sbjct: 576 FACMEIVLREKRYRYFMELWEKTDPLTEPEKDKFYADAMYAEKMRLQELDKQ 627


>gi|326316263|ref|YP_004233935.1| DNA primase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373099|gb|ADX45368.1| DNA primase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 679

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 147/470 (31%), Positives = 234/470 (49%), Gaps = 27/470 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P+ FI++LL  + + +++G+YV   +   N     +   CPFH EK+PSF  + SK 
Sbjct: 1   MSIPQSFIQELLSRVDVVDVVGRYVQLKKGGAN-----FMGLCPFHGEKSPSFSVSPSKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------KIQ 114
           FY+CF C   G+ +SFL    G  F+E+VQ LA   G+ +P  D   +++E      + Q
Sbjct: 56  FYHCFGCGKNGNAISFLMEHAGMGFVEAVQDLAQQVGLQVPQDDVSPQERERAAAQRQKQ 115

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  ++E A + +   L+ +  +R   Y   RG+     + + LGYAP+   +L     
Sbjct: 116 ATLTDVLEKAGEAYRRHLRES--QRAIAYFKGRGVSGAVAKRYGLGYAPEGWRTLASVF- 172

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
              +    + E+GL+I  +     YDRFR+R++FPIR+ +G+ I FGGR L   +  KYL
Sbjct: 173 -PEYDNPLLHESGLVIVNEEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVL-GDDKPKYL 230

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKG+ LY  F A   ++             + ++ EGYMDV++L Q G  N 
Sbjct: 231 NSPETPVFHKGRELYGLFEARTAIR----------EHGYALVTEGYMDVVALAQLGFPNA 280

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V++LGTA T   +  L++ +  +V  FDGD  G RAA KA+D  L +      V F+ L 
Sbjct: 281 VATLGTACTPEHVHKLFRFTDTVVFSFDGDAAGRRAARKALDGALPYATDTRSVKFLFLP 340

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPDSF+R +G  AF + +  ++PL   L +  +E       + RA +  + +     
Sbjct: 341 AEHDPDSFVRAHGTDAFARHVQGAMPLSRFLVEAASEGCDLGLAEGRARMAANARPLWTA 400

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
           + D  L+      + + L QL    +++                   P  
Sbjct: 401 LPDGALKRQLLGELAE-LAQLTSADLSDLWNQAAAQDAGRHGGGGARPQS 449


>gi|34581079|ref|ZP_00142559.1| DNA primase [Rickettsia sibirica 246]
 gi|28262464|gb|EAA25968.1| DNA primase [Rickettsia sibirica 246]
          Length = 595

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 173/633 (27%), Positives = 301/633 (47%), Gaps = 50/633 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    +F + L   I IS+++ Q V   R+      G+Y   CPFH EKTPSF  ++SK 
Sbjct: 1   MRVAPEFYEFLRNRINISDVVRQKVALTRK-----SGNYVGLCPFHQEKTPSFTVSNSKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F+YCF C   GD + F S + G S+ ES  +LA   G+ +P +  K ++  +   +++ +
Sbjct: 56  FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLAIDYGIEIPKLTAKQKEFYEESDEILNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L       + +YL ERGI    ++ F +G+AP +    +    +     
Sbjct: 116 LELANKFFRTQLT----PEILHYLHERGITEETVKEFSIGFAPKNNKFEKFFHDKNIDII 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +      +    +     Y+ F NR+  PIR+   +++ FGGR L +G   KYLNSPET 
Sbjct: 172 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETT 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY    A++   K           +  ILVEGY DV++L QAG    V+SLGT
Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSETVASLGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ++TE  L  LW+    I+LC DGD+ G++A+ + I+L L  +    +++F+ L  G DPD
Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPSGLDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +   G   F KLI + + L +M+W  E   +SF T +E+A LE  LKN  + I D  L
Sbjct: 339 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKSFKTAEEKANLEKILKNYCSKISDSDL 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y +  +D++ Q                  N     +K  ++    + ++      + 
Sbjct: 399 KVSYYRFFKDQIWQ------------------NLVTTQKKATTKNSNLAPIISSHGYSEL 440

Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            + E A    L+  P IL+E      ++++ ++N  L++  ++  ++ ++       EI 
Sbjct: 441 EILEHAFCALLVKFPIILEEKDIRDFISNLNFNNKSLEEFRNWYLNEIIDNN-VEASEIT 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +  F ++   L +        S       +D+   +     L+K++ L++ Q+E  
Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNIRLDLLWQW-----LHKKYYLINLQQEYA 554

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
              I   T   + EK  +    + ++  ++  +
Sbjct: 555 I--IINSTDNHDFEKVLLYKKEILKIANELQVL 585


>gi|220904358|ref|YP_002479670.1| DNA primase [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868657|gb|ACL48992.1| DNA primase [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 580

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 169/626 (26%), Positives = 268/626 (42%), Gaps = 63/626 (10%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            RD I+ +   + I +++ +YV+  R         + A CPFH E  PSF  N+ +G +Y
Sbjct: 3   SRDAIRAIKERMNIVDVVRRYVELKRNG-----PRWVAPCPFHQETKPSFSVNEDQGLFY 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTDL 117
           CF CH  GD   F S + G  F E++++LAA AG+ +              ++   +  +
Sbjct: 58  CFGCHASGDIFDFYSRINGLDFKETLEQLAAEAGITIERGPGGARRQGEERERRSSRQQM 117

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +R+ E+A   F  +L          Y+++RG+    ++ F LG+A     SL + LR+ G
Sbjct: 118 LRMYELAAGHFAATLNGPDGAECRTYMEKRGLSQEIVQHFGLGWAKREWQSLADSLRRAG 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           F     IEAGLL   DN   +YDRFR RLIFPI+S   Q+IAFGGR ++  +  KY+NS 
Sbjct: 178 FDARMAIEAGLLGQSDNG-RAYDRFRGRLIFPIKSLSNQIIAFGGRIIADEDEAKYINSA 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T ++ KG++LY    A   +    R           +L EGYMDVL+L Q G  N V  
Sbjct: 237 DTPIYKKGEHLYGLAQARKGMVTKGRA----------LLTEGYMDVLTLHQFGYDNAVGV 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTALT  Q++ L     ++ L FDGD  G +AA ++ ++    L  G   + VL+  GE
Sbjct: 287 LGTALTPEQIKRLSGFVSQLTLLFDGDRAGRKAALRSCEM---LLTRGLACSVVLMPEGE 343

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           D DS +R  G  AFE+L  ++   +              T +               ++ 
Sbjct: 344 DIDSLLRGSGPEAFEELQAQAPDGLRFCVDVLKALAPRETVEWARNFLR-------QVEI 396

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +L   Y   +   LQ                     R      PS R++Q+        
Sbjct: 397 PELVSPYVSRLAGHLQLSEADLREGLMQSRGVKNDKTRPGSNSLPSGRVLQN-------- 448

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
               +R+  +++  + +P  L    +  AD+   +   ++LW  +               
Sbjct: 449 ----IRDREIMMFAVRYPHRLTNMLELGADLALQSAVARQLWDKI--------------- 489

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                  G  E+   LD++ ++        EA   D      ++L  Y      S QK  
Sbjct: 490 ----ETHGADEVFHHLDQREKNFWCKCCGPEAAPRDNGDRELESLRHYLNNYYASAQKSS 545

Query: 598 IEKQIAQVTAKGEAEKTAILISILHE 623
           +   +   T  G+ E     +  L E
Sbjct: 546 LSAALRANTGTGDFEADMDYLRALKE 571


>gi|240142584|ref|YP_002967097.1| DNA primase [Methylobacterium extorquens AM1]
 gi|240012531|gb|ACS43756.1| DNA primase [Methylobacterium extorquens AM1]
          Length = 515

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 153/445 (34%), Positives = 228/445 (51%), Gaps = 16/445 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +  + + ++   +P+S + G+ V   R        ++    PF  E+TPSF  ND K 
Sbjct: 1   MRFSPEILDEIRSRVPVSQIAGRRVALRRSGR-----EWKGLSPFQQERTPSFFVNDHKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CFS    GD   FL    G +F E+V+ LA+ AG+ LP    +       +  ++  
Sbjct: 56  FYHCFSSGRHGDVFRFLMETEGMTFPEAVEALASEAGIDLPAGPIEGFAGRSRRHGILEA 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A  FF  +L+    +     LD R + + A + F +GYAP     LR HL+  GF +
Sbjct: 116 LLAAAAFFREALEGEVGEDARGLLDRRAVGTSARDRFGMGYAPLGWDRLRTHLKDLGFDD 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E + EAGL+  G     ++DRFR+R++ PI  + G+++ FG R L +  S KYLNSPET 
Sbjct: 176 EILAEAGLVGTGARGLAAFDRFRDRIMLPIHDASGRLVGFGARALVEDGSPKYLNSPETR 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F KG+ L+NF  A              + +  +++VEGY+DV++L  +  Q  VS +GT
Sbjct: 236 VFRKGELLFNFHRARTA-----------DPAQPLVVVEGYLDVVALESSQWQRTVSPMGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  QL L W+LS   VL  DGD  G RA  +AID  L  L+PG  +    L  G+DPD
Sbjct: 285 ALTGEQLHLAWRLSDEPVLLLDGDGAGRRATDRAIDAALPELLPGRSLRIGRLPDGQDPD 344

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +R        + +  +LPLVD LW RET     +TP+ RA +E  L   ++ I+D  +
Sbjct: 345 GMVRAGRLDEIAEAVEGALPLVDALWLRETGGADASTPERRAAIESRLVAAVDRIRDPLV 404

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSG 445
           R +Y+  I  RL             
Sbjct: 405 RRHYADEIARRLGAPPPDRGQPQRP 429


>gi|289449853|ref|YP_003475182.1| DNA primase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184400|gb|ADC90825.1| DNA primase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 621

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 148/621 (23%), Positives = 258/621 (41%), Gaps = 40/621 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDW-DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P   I D+     I  ++ +YV    +   N     ++  CPFH+E TPSF     K 
Sbjct: 6   RIPETIIADVKRSNDIVAVVEEYVTLSKKTGAN-----FFGLCPFHNEVTPSFSVAPDKQ 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLI 118
            +YCF CH  GD + F+S +   ++ E+++ LA    + +P  D  P   K+  +Q  + 
Sbjct: 61  IFYCFGCHRGGDVIKFISEIEKLNYPEAIRFLAKRVNITIPETDVSPYDAKRRSLQKQIE 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG- 177
            +   A  F++ +L+   +     Y   RGI   +   F +G+AP++  +L +H   K  
Sbjct: 121 SMYLEAAKFYYRALERDPEHTALKYCVARGITPISRRSFGIGFAPNTWDALYKHFELKHL 180

Query: 178 -FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLN 235
              +E + ++GL           DR RNRLIFP   + G++IAFGGR ++  +   KYLN
Sbjct: 181 TRDKEALEKSGLFTKNKYG-GYCDRMRNRLIFPFFDTTGKIIAFGGRIMNADKAQAKYLN 239

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET ++ KG +LY    A                S+ I+LVEGYMDV+S   AG    V
Sbjct: 240 SPETPIYTKGDHLYGLHLARK------------TKSNHILLVEGYMDVISAHAAGADFTV 287

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +SLGTALT+ Q R+L  L   I L FD D  G  A  ++ID+           + +LL  
Sbjct: 288 ASLGTALTKRQARILGNLHKTITLAFDSDAAGQSAIMRSIDI---LAEEDIPTDILLLPD 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPD +IR  G  AF  L  +++ ++D       EN   +   ++   + ++   +   
Sbjct: 345 GKDPDEYIRKNGAAAFLGLTQKTVSVLDFKLHLAKENAIVSGQLDKRRYQENVFAILRQE 404

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K+  L       +   L    Q  I ++    R      +    K           V   
Sbjct: 405 KNSLLVDSVLNNLSIELGCRLQLLINDYQAKNRDPAFIRQLTSNKDNFPERKSGEGVAST 464

Query: 476 LSKKPSLREAA--------LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
                S+ E          ++  ++  P ++ +         + +  L  L+  + +   
Sbjct: 465 SDISNSVPETLGDIELQLNIISIILCVPDLITKAKFLPQADDFSDRSLGLLFMAIKTLAP 524

Query: 528 EQKYFLP----EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
            +  F       +  +   E  +  +++        A       + +++ +R      L 
Sbjct: 525 GKPDFTTLIGLTQAVRDFPESYYKRIMEICVNFEISADTVKKLEKNSLILMRDSAADKLN 584

Query: 584 LYKRFRLLSRQKEE-IEKQIA 603
              +      + +  ++++I 
Sbjct: 585 RLAQRLHPDNKIDAGLKQEIQ 605


>gi|257066627|ref|YP_003152883.1| DNA primase [Anaerococcus prevotii DSM 20548]
 gi|256798507|gb|ACV29162.1| DNA primase [Anaerococcus prevotii DSM 20548]
          Length = 544

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 152/563 (26%), Positives = 255/563 (45%), Gaps = 56/563 (9%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M+      I  +L    I ++IG+YVD  R  +      +   CPFH+EKTPSF  ++ K
Sbjct: 1   MSLISDSKINQILESSNIVDIIGEYVDLKRAGS-----SFKGLCPFHNEKTPSFTVDEKK 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
             ++CF C   GD +SF+    G S+ ES++ LA  AG+ +     +     K   +L  
Sbjct: 56  QLFHCFGCGAGGDVVSFIMQKEGLSYPESLKYLADKAGISIDYT--ENPGVNKKNKELYD 113

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           + +    FF+ +L   R  +   YL  RG+ S  +  F LGYA DS   L  ++R+K +S
Sbjct: 114 INKDIMMFFYKNLLTDRKAQA--YLKSRGLSSKIVNTFMLGYARDSWDDLYSYIRKKNYS 171

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           E+ + + GL I   +    YD++R+R+IFPI +  G+VI FGGR    G+  KYLNSPE+
Sbjct: 172 EKDLDDLGL-IKKSSKGNYYDKYRDRIIFPIINHFGKVIGFGGRA-VSGQMPKYLNSPES 229

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K  NLY         +K             +ILVEGYMDV++L   G+   V+SLG
Sbjct: 230 SIFKKRYNLYGLNIYKRQKRK------------ELILVEGYMDVIALNNHGLDIAVASLG 277

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALT  Q +L+ + S  I +C+D D+ G++A  KAI++       G   + ++L  G DP
Sbjct: 278 TALTIDQAKLMKRYSDDIYICYDQDNAGVKATEKAIEI---FHEIGINPSVIVLDDGNDP 334

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D FI+  GK AFE+ I ++    +  + +  +  S   P ER +      + +  IK + 
Sbjct: 335 DDFIKAKGKDAFEEKIADAQDSYNYKYNKILDEYSSAKPAERFDKLNLFVDFLASIKQEL 394

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  +   +               S Y +       ++ +    ++++  S  K      
Sbjct: 395 TQEIFINNVSKLFDIDKTTLKQAVSRYNKDTDLKYSNKSKFNKKEKIIVESTNK-----D 449

Query: 480 PSLREAALLLTLIN-------HPAILQEQYQ--------------ELADIRYDNNELQKL 518
             + E  +L    N                +              +++     + + + +
Sbjct: 450 FRINELEVLRLFFNQRSDYEKDRDFFDRAIENEKINNVKTFLKEKDVSKFDLSDEDYKYI 509

Query: 519 WSFLFSDFVEQKYFLPEEIHQRL 541
             ++          L EE+ +++
Sbjct: 510 LDYIRD---NTNPILAEELKRKI 529


>gi|227486749|ref|ZP_03917065.1| DNA primase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235219|gb|EEI85234.1| DNA primase [Anaerococcus lactolyticus ATCC 51172]
          Length = 555

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 148/580 (25%), Positives = 256/580 (44%), Gaps = 37/580 (6%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M+    D I  +  +  I ++IG+YVD  +  +      Y   CPFH+EKTPSF  +  K
Sbjct: 1   MSLISDDMINQIKENSDIVDIIGEYVDLKKAGS-----SYKGLCPFHNEKTPSFTVDKKK 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
             ++CF C   GD +SF+    G S+ ES++ LA  AG+ +  V  +  +  + +  L  
Sbjct: 56  QLFHCFGCGAGGDVVSFIMQKEGLSYPESLKYLAHKAGINI--VFTENPEVNQKKVRLYE 113

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           + +    +F+ +L   +  +   YL +RG+ S+ +  F LGYA DS   L    + K  +
Sbjct: 114 INKEIMMYFYKNLLTTKAPQD--YLLKRGLRSNIVNTFMLGYAKDSWDDLLSFAKSKNIN 171

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           E+ + E GL I    +   YD++RNR+IFPI  + G++I FGGR++      KYLNSPE+
Sbjct: 172 EDDLFELGL-IAKSKNGKFYDKYRNRIIFPIIDTYGRIIGFGGRSI-DNTMPKYLNSPES 229

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K  NLY         ++             +ILVEGYMDV++L   G+   V+SLG
Sbjct: 230 DVFKKRFNLYGLNIFKKQSKR------------DLILVEGYMDVIALNNNGIDLAVASLG 277

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALT  Q +L  + +  I +C+D D  G++A  +AI++          V+ + L  G DP
Sbjct: 278 TALTVEQAKLAKRYADNIYICYDSDSAGIKATKRAIEI---FKEAEIGVSIIQLGEGLDP 334

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YGK AFE  I E++   +  +++  +  S  + +E+ E        +  I    
Sbjct: 335 DEYVKKYGKEAFENKINEAVDEYNYTYEQILDGYSQASENEKLEKLNQFIGFLASINQDL 394

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  +   + +      Q      S Y     K   ++D         + ++V  +    
Sbjct: 395 TREIFINKVSNLFDIDKQTLKGAISKYNNKHHKEKIYKD------NFPEPNIVVEEKKTD 448

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD---FVEQKYFLPEE 536
            +  E  +L  + N     +E           + + +    FL +       +       
Sbjct: 449 INAHELEILRLIFNQQEDYKENSDYFDKY-LTSPKAKNFRDFLINKEVDKFNKADSDYRY 507

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
           +   + +     L+ +L  ++                +  
Sbjct: 508 MLDYVMDDNNPILVSELKDKINLYERIQKRNNLRRSPINS 547


>gi|225163702|ref|ZP_03726005.1| DNA primase [Opitutaceae bacterium TAV2]
 gi|224801693|gb|EEG19986.1| DNA primase [Opitutaceae bacterium TAV2]
          Length = 621

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 129/649 (19%), Positives = 238/649 (36%), Gaps = 60/649 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I+DL + + I +++ +     R       G +   CPFH EKTPSFH N  +GF+
Sbjct: 4   IKPACIRDLKVRVNIVDVVSRVATLRRAG-----GRFKGLCPFHSEKTPSFHVNPDRGFF 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLIR 119
            CF C   GD ++F+      +F E+V+ L    GVP+   +       ++  ++ +L  
Sbjct: 59  KCFGCGKAGDIITFVQETEQLTFGEAVETLGKRFGVPIEYEEGSGGPSREERSLRQELFD 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERG-----IDSHAIEMFKLGYAPDSRYSLREHLR 174
           L + A + FH   +         Y+ +             + F++G        L     
Sbjct: 119 LHDFAAEHFHQVFRTKGGGWAGDYMRDYWTTKRRFSMELADEFRIGATDAQGSGLVAAAL 178

Query: 175 QKGFSEEKIIEAGLLIDG----DNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---- 226
           +K FSEE + ++ L            T   RF+ RL+ PIR  +G+V+AF  R       
Sbjct: 179 KKKFSEEALRQSSLFYIRDGALPTLGTVRPRFKGRLMIPIRDHQGRVVAFTARQTDLTPK 238

Query: 227 --KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284
                  KY+NS ET +F KG  L+N   A  + +               ++VEG +D L
Sbjct: 239 DEPSYEAKYVNSTETPIFTKGHLLFNLDRARQHAK----------DGQPFVMVEGQLDAL 288

Query: 285 SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344
                G++  ++  GTA+TE QL LL +   ++   FDGD+ G  AA + + + L     
Sbjct: 289 RSWSVGIKTAIAPQGTAITEQQLHLLRRYHTQVECFFDGDNAGRAAALRFLPMAL---KA 345

Query: 345 GNRVNFVLLSR--GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
           G  V F+        DPD      G  A+E+L   +   ++        +    + +++A
Sbjct: 346 GLEVRFLAAPGEAKIDPDVLFLERGLAAYEELRSGARGPMEFACAALLPDPGRASAEQKA 405

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                ++  +N  +   +R  + +     L+      + +     R           +  
Sbjct: 406 RAAQGVREIVNAAESHVVRAAFLKEAAALLRVDETALLHD----ARTNIGGRPPPPSRQA 461

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY-DNNELQKLWSF 521
                      G +       E  LL   ++H  +     +               L + 
Sbjct: 462 EADADAGRNTFGAVQAFEHTAEQHLLWLCLHHEQLGPSIARSFPRNWINTTRTAGALLNR 521

Query: 522 LFSDFVEQKYFL-PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
             ++F   + +   + +   L       ++  L          S   +  +    +  +Q
Sbjct: 522 FLNEFEHGEDWPGLDHLDPLLETDEERNMIASL-------SFESLQVDEPLKVAIEAIRQ 574

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                 R   L  +  +++  IA     G ++    +     E+  Q+ 
Sbjct: 575 -----LRAHALEPRLRQLDLAIA----SGGSDDPIAMFKERTELQRQLR 614


>gi|319935433|ref|ZP_08009870.1| DNA primase [Coprobacillus sp. 29_1]
 gi|319809649|gb|EFW06062.1| DNA primase [Coprobacillus sp. 29_1]
          Length = 585

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 143/633 (22%), Positives = 285/633 (45%), Gaps = 53/633 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I ++   + I ++IGQY+  +++  N     Y A CPFHD+  PS   +  K  
Sbjct: 3   RLSQEKINEIRQSVDIVDVIGQYLALEKKGRN-----YMAVCPFHDDTHPSMSVSPDKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIR 119
           + CF CH  G+  +FL   L  S+IE+V+++A I  + L      +EK+   +    L +
Sbjct: 58  FMCFVCHTGGNVFTFLQEYLKISYIEAVKKVAEIGRIDLSDYQLDVEKRPINQEHVALYQ 117

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           + + A   + + L          YL  R      I+ F++GYAP     L +   + GF 
Sbjct: 118 MHQEAQKIYSYYLNTKLGLEAKTYLLNRQFTDELIKEFQIGYAPLEP-VLHQSFEKLGFQ 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPE 238
           E  ++++GL+I+   S  ++DRF +R++FP+ + +GQVI F GR     +   KY+NSPE
Sbjct: 177 EIDMVKSGLVIE---SQKNFDRFNDRIMFPLFNQQGQVIGFSGRIYKPTQTDAKYMNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + +F KG+ LY++      ++           + F+ L+EG+MDV+++ +AG+ N ++ +
Sbjct: 234 SDIFIKGQTLYHYHQCREAVK----------QAGFVYLLEGFMDVIAMYKAGIGNTLAIM 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT+  ++ L +L+  + LC DGD  G  A  KA          G +V  ++L  G+D
Sbjct: 284 GTALTKGHIQALRRLTNTVHLCLDGDQAGQAAMSKAAR---ELEEAGFKVQIIILPDGKD 340

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD   + +G+   E+++ +++  ++     E +       D+R +    +   I  I D 
Sbjct: 341 PDEIYQMHGQEGLEEVLRKTVKPIEFQMDFEYQLVDPLNYDDRKQYLEKMCYEITQITDD 400

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R YY   +  +    ++       G      ++  HR+ K              ++  
Sbjct: 401 IDRDYYIHVLSKKSGFSYEIIQQRVVGMKPQRIEDTVHREIKK-----------TIQIID 449

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           K    E  LL  ++N   +  +   +   +   N+  + + S++   +    +    ++ 
Sbjct: 450 KYRKAEHDLLFYMLNSKDVALKYEAKAGFM--YNDAYRVIASYIVDYYRNHSHLEVADLI 507

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +    + + ++ +    + L     E  I D           Y +    + +K + 
Sbjct: 508 NSIQKEQLIQTVIEISQ----SALPLNYEEKAIDD-----------YIKTIAANARKMKK 552

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           E+ + Q     +  + A +++ + ++  +   I
Sbjct: 553 EQLLEQFNYSLDPSQKAQILNEIVKLENEKESI 585


>gi|73666940|ref|YP_302956.1| DNA primase [Ehrlichia canis str. Jake]
 gi|72394081|gb|AAZ68358.1| DNA primase [Ehrlichia canis str. Jake]
          Length = 604

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 161/638 (25%), Positives = 275/638 (43%), Gaps = 59/638 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            Y  + +  +   + +S+++GQ V   +R  +         CPFH EKTPSF  +D KG 
Sbjct: 15  AYDMNVVDIIKSKVKLSDVVGQRVKLTKRGNSV-----IGLCPFHGEKTPSFTVSDEKGL 69

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C   GD + F S +    F  +V  LA +  + LP            ++ LI L+
Sbjct: 70  YYCFGCGANGDVIQFTSDINALDFKGAVDYLAEMYSIDLPKST-------SKKSSLIPLL 122

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           + AT +F   L     +    Y+  R I S  ++ F+LGYAP     L ++L  +GF+  
Sbjct: 123 DAATLWFEKQLFAN--RVAIEYIKSRKIFSDTVKKFRLGYAPAY--GLSKYLLSQGFNIN 178

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            I   GLL   D      D F NR+IFPI +S G  I FGGR++   +S KYLNS   + 
Sbjct: 179 DIRSVGLLNSQDQ-----DYFYNRIIFPICNSSGDTIGFGGRSIVDAQSPKYLNSRGNVF 233

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K +NLY    A+  ++K  +          II+VEGYMDVL L Q GV NVV  LGT+
Sbjct: 234 FQKRENLYASHFAVREVKKQGK----------IIVVEGYMDVLMLHQIGVCNVVGLLGTS 283

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           +T   L  LW+++  I++  DGD  G  ++ K+  L L  + PG  V FV +  G DP  
Sbjct: 284 MTSEHLMYLWEITSEIIIWMDGDVAGKMSSIKSALLALSLIKPGCVVKFVDVFTGMDPYD 343

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN----TPDERAELEIHLKNCINHIKD 417
                G  +   L+  +  L + +W  E    S +     P++   LE  +K+ ++ I D
Sbjct: 344 VCINGGVDSVNSLLDSAKLLSEFIWDYELAKISTDKSSVMPEQCVVLEARIKHYLDQIGD 403

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             +  YY +    +++ L              +++N           R            
Sbjct: 404 GNIAKYYKKYFYSQIRDL-------------QYRRNESKPLANHSINRASNKLKYVNDEF 450

Query: 478 KKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSD--FVEQKYFL 533
                 +  ++  ++  P +L +   + + +     N  + KL   + +    +      
Sbjct: 451 LLEEYNQLRVMYVIMEFPELLDDPIIFDQFSKFNIKNKNVYKLQQNIINIKVTLCDHVMS 510

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            E +   L +     ++  +  ++  +   S    A+ +D+ +   + + L         
Sbjct: 511 KEMLLLELKKSNLEGVIDFISSKISASSFMSIQNRAHNIDIAKKEIEKIMLLDN------ 564

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             + I+ +I  +   G+ +    L +   E+  ++ ++
Sbjct: 565 -LQCIQAEILDLRLHGKRDLAEKLSNQAQEIDSRLREL 601


>gi|225630229|ref|YP_002727020.1| DNA primase, DnaG [Wolbachia sp. wRi]
 gi|225592210|gb|ACN95229.1| DNA primase, DnaG [Wolbachia sp. wRi]
          Length = 582

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 167/634 (26%), Positives = 289/634 (45%), Gaps = 70/634 (11%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I  +   + +S+++G+ V   +R        +   CPFH+EKTPSF  +++KG YYCF C
Sbjct: 4   IDIIKSKLLLSDIVGKKVRLIKRG-----DSFVGLCPFHNEKTPSFSVSNTKGLYYCFGC 58

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
              GD   F+S   G SF E++++LA++ GV LP      ++  K    L   +++A ++
Sbjct: 59  LASGDAFEFISQTEGLSFKEALEKLASVTGVELPKNLSITKEDNK----LFLALDLAANW 114

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
           F        ++ +  YL +R I    I+ FK+GYAP S   L+E+L   G  +  +I+ G
Sbjct: 115 FAQK-----NQGVVDYLKQRKISPKIIDQFKIGYAPSS--GLKEYLNSSGIEDRILIDIG 167

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247
           L+          D F +RLIFPI+S  G+VI FGGR LS  +  KYLNSPE+ LF K +N
Sbjct: 168 LVNK-----NFRDYFYDRLIFPIQSIAGRVIGFGGRVLSSEQQPKYLNSPESQLFKKREN 222

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           LY    AL+ ++K             I++VEGYMD ++L QAG+ N V+ LGTA++  Q+
Sbjct: 223 LYGLNFALSEIRKK----------QHILVVEGYMDTIALHQAGISNAVAPLGTAISAEQI 272

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR--C 365
           + LW+ +  I +C DGD  G  AA +  +L L  L PG  + FV L   +DP        
Sbjct: 273 KNLWRFAKEISICMDGDSAGRHAATRVAELALPILEPGYTLKFVTLPSNKDPYDICNELE 332

Query: 366 YGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           Y K      +  S  L              +N     P++ + LE      +N I +  +
Sbjct: 333 YKKEDVLTALDHSTKLHSEYLWHHIIDSNLQNYEKLAPEKYSILEHKFMEYVNTISNSSI 392

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R YY     ++         +E     +    N++ R  KG         L++ + +   
Sbjct: 393 RRYYRDYFYNK--------ASELRSSFKKQIFNSKTRATKGEYLHNKSPELIEAEQN--- 441

Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              +A +L   +  P IL     +++ +   + N E+++L   +      +     E + 
Sbjct: 442 ---QAVILRIAVEFPEILNRPIFFEQFSHFEFTN-EMKRLQQRIIDVISNKNKLDKEALL 497

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           Q L +                  +     + ++++ +   +++  +     +L ++   +
Sbjct: 498 QELKQFNV---------------IKYVFEKTSVLNSQLNERKSAEIVWNNIVLLKELNAL 542

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            K+  +    G  +    LI  + ++   I +++
Sbjct: 543 RKERTEARLSGNLDLEERLIEQIEQIESSIQEMQ 576


>gi|323697927|ref|ZP_08109839.1| DNA primase [Desulfovibrio sp. ND132]
 gi|323457859|gb|EGB13724.1| DNA primase [Desulfovibrio desulfuricans ND132]
          Length = 583

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 178/614 (28%), Positives = 273/614 (44%), Gaps = 50/614 (8%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I+ +   I IS+++ +YVD        V G +   CPFH E  PS   ND +GF+YCF C
Sbjct: 6   IEAVKARINISDVVRRYVDLK-----PVSGRWMGACPFHQETKPSMSVNDEEGFFYCFGC 60

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRLIEVAT 125
              GD + F   + G  F ES+++LAA  GV L     DP   +++  +  L+ + + A 
Sbjct: 61  QASGDVIDFYGRINGLEFKESLEQLAAECGVELSHVPSDPHAAERKARKQLLMDMHDEAN 120

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
            FF  +L  A   +   YL  RG+    I  F LGY+P+  + L   LR KG S E  +E
Sbjct: 121 QFFQRNLSLASGDQCRRYLANRGMTPEMIAKFGLGYSPEDWHGLDNFLRTKGRSPEDGVE 180

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
           AGLL         YDRFR RLIFPI++  G+VIAFGGR +++GE  KYLNS +T ++ KG
Sbjct: 181 AGLLSKN-EKNNIYDRFRGRLIFPIQNLSGRVIAFGGRIITEGEP-KYLNSSDTPIYKKG 238

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
            +LY    A + + ++ R           IL EGYMDV+SL Q G  +    LGTALT  
Sbjct: 239 DHLYGLNLARSTMTRTKRA----------ILTEGYMDVISLHQFGYTDSCGVLGTALTAD 288

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
           Q++ L     R+ L FDGD  G +AA K+  ++L     G     VLL  GED DS ++ 
Sbjct: 289 QVKRLAGFCSRVDLVFDGDGAGHKAAMKSSRMILLQ---GVACRAVLLPDGEDVDSLLQT 345

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            G   FE  + E+   +        E  +       A+        ++ + D  LR YY 
Sbjct: 346 RGAEGFEVCLNEAPDGLTFCMNTLREEYAPRDIMAWAKS------FLSELSDASLRAYYL 399

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             +   L  L +      +G     ++N RH+ ++        +  V    +        
Sbjct: 400 PRLVTGLG-LSEADFRRDAGAAAPQQRNPRHQPRQTMRAEPQPAMGVGKDFADD-----R 453

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L   I +P  + E  +            + LW  L       +      I   L E+ 
Sbjct: 454 YFLRFSIQYPDYVTELAKRGMTQVLRTEWARALWEKL-------ETTQQGHIASLLNEQE 506

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
            G   +      R+    +  +  ++++        +AL ++       K ++ + I Q 
Sbjct: 507 KGFYFR-----CREELHENVLSGRDLLEEWNHICHTIALEQQKL----DKRQLTEAIRQA 557

Query: 606 TAKGEAEKTAILIS 619
              G+ E+   L++
Sbjct: 558 QQSGDTERAMQLLA 571


>gi|2494142|sp|P71481|PRIM_LEGPN RecName: Full=DNA primase
 gi|1575484|gb|AAB09542.1| LpdnaG [Legionella pneumophila]
          Length = 576

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 163/618 (26%), Positives = 275/618 (44%), Gaps = 53/618 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    +  LI  YV   +R        + ACCPFH+EKTPSF+    K FY
Sbjct: 5   IPQPFIDDLLNRTDLVELIDGYVPLKKRGN-----SHIACCPFHNEKTPSFNVVAKKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G+ +SF+   L   F ++V+ L   A V  P      + K  +   L  L+ 
Sbjct: 60  HCFGCGASGNAISFVMNYLNQGFTDAVETL-RRAWVKCPRDGTGEKHKSSLN--LYNLMS 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
             + ++   LK    +    YL  RG+     + + LGYAP+  ++L    +    ++ +
Sbjct: 117 EVSQYYQKKLKYN-GQVAIDYLRNRGLSGEIAKRYHLGYAPEGWHNL---EKAFPNNQRE 172

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++  G+LI  D     YDR+RNR++FPI    G+VI FGGR L K +  KYLNSPET+LF
Sbjct: 173 LLSTGMLIKSDEG-KIYDRYRNRIMFPIHDRNGRVIGFGGRVLDKDQKPKYLNSPETVLF 231

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K + LY                 ++ +   II+VEGYMDV++L Q G+ NVV++LGTA 
Sbjct: 232 QKSRELYGLHQ----------VLSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 281

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           + + ++LL K +  ++ CFDGD  G +AA++A++  L HL  G    F+ L    DPDS 
Sbjct: 282 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 341

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +R  GK  F +L+ ++ PL    +   +++ + + P  + +L   +K  +  + +   + 
Sbjct: 342 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMVEGSYKQ 401

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                +  RL  +    +T         K   +    + P                    
Sbjct: 402 LLIDDLS-RLTHIESHRLTNLITDKSESKPEVQAAISRSPL------------------- 441

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
                +  L+ +P I     Q++        E   +   L     ++       + +   
Sbjct: 442 --RIAIALLLQNPEIYSIAIQQINPALLHEQEHH-ILLKLLQQLKDKPNANTATLIEFWR 498

Query: 543 ERGFGELLKQL---DRQVRDAGLWSATTE----ANIVDVRQGYQQALALYKRFRLLSRQK 595
              + EL+ +L   D QV +  L     +        +     +Q +   ++  L   ++
Sbjct: 499 NSSYFELIVKLAAWDHQVPEQELTKEFIDVLLFLQKQNREILIRQYIEKSRKTGLTEAER 558

Query: 596 EEIEKQIAQVTAKGEAEK 613
             ++  + +   + E EK
Sbjct: 559 LSLQNLLKERHGQAEIEK 576


>gi|239948366|ref|ZP_04700119.1| DNA primase catalytic core domain protein [Rickettsia endosymbiont
           of Ixodes scapularis]
 gi|239922642|gb|EER22666.1| DNA primase catalytic core domain protein [Rickettsia endosymbiont
           of Ixodes scapularis]
          Length = 595

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 173/633 (27%), Positives = 295/633 (46%), Gaps = 50/633 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    +F + L   I IS+++ Q V   R+      G+Y   CPFH EKTPSF  +DSK 
Sbjct: 1   MRVTPEFYEFLRNRINISDVVRQKVALTRK-----SGNYVGLCPFHQEKTPSFTVSDSKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F+YCF C   GD + F S + G S+ ES  +LA   G+ +P +  K ++  +   +++ +
Sbjct: 56  FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLATDYGIEIPKLTAKQKEFYEESDEILNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L       +  YL  R I    I+ F +G+AP +    +    +     
Sbjct: 116 LELANKFFRTQLT----PEILNYLHRRNITETTIKEFSIGFAPKNNKFEKFFHDKNIDII 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +      +    +     Y+ F NR+  PIR+   +++ FGGR L      KYLNSPET 
Sbjct: 172 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVL-GDGLPKYLNSPETT 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY    A++   K           +  ILVEGY DV++L QAG    V+SLGT
Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSEAVASLGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ++TE  L  LW+    I+LC DGD+ G++A+ + I+L L  +    +++F+ L  G DPD
Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLLSGLDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +   G   F KLI + + L +M+W  E   +SF T +E+A LE +LK+  N I D  L
Sbjct: 339 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKSFKTAEEKANLEKNLKDYCNKISDSNL 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y +  +D++ Q                  N   + +K  ++    + +V      + 
Sbjct: 399 RASYYRFFKDQIWQ------------------NLVSKQKKVITKSSNLAPIVSSHSYSEL 440

Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            + E A    L+  P IL+E      + ++ ++N  L++  ++  ++ ++       EI 
Sbjct: 441 EMLEHAFCALLVKFPIILEEKDIKDFILNLNFNNKSLEEFRNWYLNEIIDNN-VEASEIT 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +  F ++   L +        S       +D+   +     L+K++ L++ Q +E 
Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNIRLDLLWQW-----LHKKYYLINLQ-QEY 553

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
              I       + EK  +    +  +  ++  +
Sbjct: 554 TITINSTDN-HDFEKVLLYKKEILRIANELQVL 585


>gi|315185630|gb|EFU19398.1| DNA primase [Spirochaeta thermophila DSM 6578]
          Length = 598

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 168/638 (26%), Positives = 276/638 (43%), Gaps = 53/638 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++   + + +L+G+Y    R         Y   CPFH +  PSF  +  KG 
Sbjct: 3   RIPQEIIEEIQRRVDVLSLVGEYTSLRRAGN-----SYMGLCPFHADSDPSFSVDPEKGL 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL 120
           +YCF CH  G+   F+  +  C+F E+V+RLA  AGV +   V P+ E   K +  L  L
Sbjct: 58  FYCFGCHKGGNIFQFVMEVEHCTFYEAVERLAERAGVSITAKVTPEEEASFKKERALQDL 117

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHA-IEMFKLGYAPDSRYSLREHLRQKGF 178
                  F H L +    +    Y   RGID     + F LGYAP   Y L   LR+KG+
Sbjct: 118 NLRLVGLFEHFLHSREEGRAAREYCVSRGIDLSWARDTFHLGYAPHDPYWLYRFLRRKGY 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           SEE +  +GL          Y  F +RLIFPI    G+V+ FGGR L + +  KYLNSPE
Sbjct: 178 SEELLHVSGLFSAKREG---YAIFSHRLIFPIYDVSGKVVGFGGRALREDQQPKYLNSPE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF K + LY    AL  L+K+ +          +ILVEGY+DVL L Q G+ NVV+ L
Sbjct: 235 TSLFKKKRLLYGLHRALPELKKTKK----------VILVEGYIDVLLLHQHGIMNVVAPL 284

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +  Q   L + +  I+  FDGD  G RAA +A  +             V+  +GED
Sbjct: 285 GTAFSREQAIQLKRYADSIIFFFDGDAAGERAAQRAGMICE---AVDFPCRMVVPPQGED 341

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD-ERAELEIHLKNCINHIKD 417
           P SF++  G     ++++E   +   L +R  +     + + +  E    + + I  ++ 
Sbjct: 342 PASFLQKKGAEEVRQILMEEKDVFQCLLERRVKEGILTSSETDMREFVTSMFSYIRSVQS 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R    + + + +         +   +    + +A      G  +   +++       
Sbjct: 402 TMRRERLLEEMAESMGVSLGAIKEDFDRFQSSERNSAPLSTTMGMGRDRRRTT------- 454

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  L   L  HP         + +   ++   ++L+  L           P+ +
Sbjct: 455 ------EVFLFQALCAHPEYYTVVRPLIQEDALEDASAKELFFALEECLRAGTMDRPDAV 508

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            + + +    EL  +         ++S   E  +  VR+   +      R + L R++ E
Sbjct: 509 LEHVTDEKARELALE--------AVFSGEFEVPLEAVREAVFRW-----REQWLHRRRRE 555

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           IE++IA    +G       L+     +  ++ ++   E
Sbjct: 556 IERKIALYEREGGD--IQELLLEKMYLDKELEKLRGYE 591


>gi|15672534|ref|NP_266708.1| DNA primase [Lactococcus lactis subsp. lactis Il1403]
 gi|19862493|sp|Q04505|PRIM_LACLA RecName: Full=DNA primase
 gi|12723438|gb|AAK04650.1|AE006289_1 DNA primase [Lactococcus lactis subsp. lactis Il1403]
          Length = 637

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 159/673 (23%), Positives = 268/673 (39%), Gaps = 84/673 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           +   + + DL   + I++LI QYV   R   N     Y   CPFH EKTPSF+ N  KGF
Sbjct: 3   SLDTEVVNDLKSKVNIADLISQYVALSRTGKN-----YIGLCPFHGEKTPSFNVNAEKGF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   GD + FL       F+++V+ LA  AGV L + D + E+K      L  + 
Sbjct: 58  YHCFGCGRSGDAIEFLKEYNQVGFVDAVKELADFAGVTLNISDDR-EEKNNPNAPLFEIN 116

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             A   ++  L +    +R   YL+ERGI    I+ F +G AP+    + ++L  K    
Sbjct: 117 NQAARLYNILLMSTELGERARKYLEERGITDDVIKRFNIGLAPEENDFIFKNLSNK---F 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238
           ++ I A   +   ++   +D F NR++FPI +  G  I F GR   + +    KY+N+  
Sbjct: 174 DEEIMAKSGLFHFSNNNVFDAFTNRIMFPITNEYGHTIGFSGRKWQENDDSKAKYINTSA 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K   L+N   A   + K             + L+EG+MDV++  +AG+ NVV+S+
Sbjct: 234 TTIFDKSYELWNLDKAKPTISKQ----------HEVYLMEGFMDVIAAYKAGINNVVASM 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE  +R L +++ + VL +DGD  G  A YKAIDL     I  + V  V +  G D
Sbjct: 284 GTALTEKHIRRLKQMAKKFVLVYDGDSAGQNAIYKAIDL-----IGESAVQIVKVPEGLD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD + + YG      L+                  +      + +    +   I  +   
Sbjct: 339 PDEYSKNYGLKGLSALMETGRIQPIEFLIDYLRPENLANLQTQLDFIEQISPMIAKLPSI 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS--------- 469
             +  Y + + + L       + +     R       H      +  L +S         
Sbjct: 399 TAQDAYIRKLVEILPDFEYNQVEQAVNLRRENMTITDHPVSNLDASSLTESFTDENDYSS 458

Query: 470 ----------------------------------SLVKGKLSKKPSLREAALLLTLINHP 495
                                               V+     +    E  LL  +I H 
Sbjct: 459 LESVMPVDFEEAYYENNVKTQQTYRRSESAQVVQPSVQVPKLSRSEKAEEMLLHRMIYHS 518

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
           ++L++  Q+  + R+ +   Q L+  +  + +  +      +   L +       + L  
Sbjct: 519 SVLKKFSQD-ENFRFVHKRYQDLFDKILLEAMVYEQIDESHLASELSDEE-----RSLFY 572

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           Q+    L    +   I D+   +   +           + EE+ +Q+A     G  E+  
Sbjct: 573 QIISLDLPDTASSQEIKDLVSIFSNEME--------QIKFEELIQQLATAEKAGNKERVL 624

Query: 616 ILISILHEVHIQI 628
            L   +     ++
Sbjct: 625 ELTLQIINQKKKL 637


>gi|258645216|ref|ZP_05732685.1| DNA primase [Dialister invisus DSM 15470]
 gi|260402566|gb|EEW96113.1| DNA primase [Dialister invisus DSM 15470]
          Length = 597

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 161/635 (25%), Positives = 287/635 (45%), Gaps = 48/635 (7%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M  +  +F++ +     + ++I  Y +D  ++ +      YWACCPFH EKTPSF  +  
Sbjct: 1   MRKFNNEFLQRVKDSTNLIDVIRAYGIDVKKKGS-----RYWACCPFHHEKTPSFSISPE 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTD 116
            GFYYCF CH  GD + F+  +   +F ++V+RLA +  V LP   +  + +++  +   
Sbjct: 56  DGFYYCFGCHESGDSIKFIEKMDQITFPDAVERLAEMGHVELPPDEISEEDKREAALVHK 115

Query: 117 LIRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L  + E+A ++FH+  L+    K    Y  +R +D   IE FKLG+AP     L     +
Sbjct: 116 LYEVTELAGNYFHNCLLRTNIGKDGLAYFKKRHLDDKTIETFKLGFAPPEWERLYCDFTK 175

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYL 234
           +       I     + G  +   YD FRNR +FPI   +G+++AFGGR +   ES  KYL
Sbjct: 176 RKHISPD-ILLQAGLVGHKNGKYYDTFRNRCMFPIMDLKGRIVAFGGRIMHSEESAAKYL 234

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET++F+K + L+  + AL  +++              I+VEGYMD +SL   G++NV
Sbjct: 235 NSPETVIFNKRRLLFPIYQALPEIRRK----------RQAIMVEGYMDAISLHAHGIKNV 284

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGTA T  Q RLL K +  ++  +D D  G  A  +A+++       G ++   LL 
Sbjct: 285 VASLGTAFTVEQARLLKKYADEVIFSYDMDAAGQNATRRALEIAGS---VGLKLRVALLG 341

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G+DPD F+  +G   + ++I +++P +D L++         T + + ++   +   +  
Sbjct: 342 EGKDPDEFVNLHGGDEYLEVIDQAVPALDYLFQALRTQYDGATLEGQQKILNEMFAVLTV 401

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
             +      + + +   L        +E     RY KKN  H           ++  V  
Sbjct: 402 QDNTYQFNSFIRKMARTLHMDEGLIRSE---AIRYTKKNNSHVYISPNVYGEERTGTVSS 458

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
              ++  L +  L   L++H  IL E +  L    + +  + +L+  L            
Sbjct: 459 NDGRQRRLEQELLKYCLVSH--ILPEGFDSLEKYSFADEFIGRLYDVLKQAGK--GNITV 514

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E    RL      +L + +                    V + Y++ +   ++   L  +
Sbjct: 515 EYAEARLERSDLEQLAQLMMTDYHG--------------VAEPYEEYIRPMRKIY-LQNE 559

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +   ++ A++  + + +K          +  +I 
Sbjct: 560 YKFHTQRAAELM-ESDPQKAKEEQLTCIRLSEEIR 593


>gi|183220953|ref|YP_001838949.1| DNA primase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911048|ref|YP_001962603.1| DNA primase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775724|gb|ABZ94025.1| DNA primase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779375|gb|ABZ97673.1| DNA primase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 603

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 137/607 (22%), Positives = 264/607 (43%), Gaps = 44/607 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN  + F + +   + I + I ++V   R   N         CPFH+EKTPSF+ N   G
Sbjct: 1   MNPYQSFKERVRREVSIDSYINRFVPLRRMGRNL-----VGICPFHNEKTPSFNVNPEGG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF C   GD   F+       F++S++ L+  +G+PL     + E+ E+ +  L ++
Sbjct: 56  FYHCFGCKASGDLFRFVMDYQKVDFLKSLEVLSEYSGIPLVERTKEEEESERKKEALYQI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A ++F  +L     +    YL+ RG+ +  +++FK+G+      +LR  L +     
Sbjct: 116 SQKALEYFQKNLNTTAGELALKYLESRGMYAEDLKVFKIGFGLPGFGNLRSELFKTDAEV 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +   + GLL   D +   YD FRNR++FP+   RG+V+AF GR L + E  KY+NSP ++
Sbjct: 176 KLGEQLGLLKRQDQNKDPYDFFRNRIMFPVIDPRGRVVAFSGRILGESEEAKYINSPNSL 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++ K +  YN   A + ++K          +   ++VEG  D + L + G++ VV+ LGT
Sbjct: 236 IYDKSRTFYNLNLAQDSIRK----------TREAVIVEGVFDAIGLFRKGIEFVVAPLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
             TE  +R+L  ++ ++ L  D D  G + A++A++L       G  V    +  G+DP 
Sbjct: 286 GFTEGHVRILKNMADKVYLMMDSDKAGTKGAFRAVNL---LSKEGVVVKVCHIPEGKDPF 342

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENR-SFNTPDERAELEIHLKNCINHIKDQK 419
            +   + K    +L+  + P    + +         +  +E+      L   +  ++ + 
Sbjct: 343 DYSLHHNKQEIRELLEGASPASQFMIREILAGAGPTSLAEEKQAGVKKLFEFLKPMEKET 402

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y +    +L   F     +  G        +    +K  + +       K      
Sbjct: 403 DKQVYLEEGARQLGLSFSSLFQDFRGKPGVTSTPSVVDTKKDRTPQ-------KPGKPSP 455

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH- 538
             + E  ++  LI +  +      +L  + + +      W +L++ +++ +     EI  
Sbjct: 456 VLVCERKMIAMLIQNLELFS-FADDLLSLEFRDEVSAFFWDYLYTKYLQNENLTAAEILS 514

Query: 539 -QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            + +     G + +     V                      +A+ LY    L   + EE
Sbjct: 515 REEIPSEYLGMIAEHFSADVSVTPATF---------------RAMFLYHADLLDDARMEE 559

Query: 598 IEKQIAQ 604
           + K++A+
Sbjct: 560 LVKEMAK 566


>gi|146295918|ref|YP_001179689.1| DNA primase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409494|gb|ABP66498.1| DNA primase [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 616

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 137/627 (21%), Positives = 253/627 (40%), Gaps = 52/627 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
              ++ +L  + I +++  Y+   R   N     + A CPFH EKTPSF+ + +K  ++C
Sbjct: 30  ERIVEQVLNKVDIVDIVSSYIPLKRVGVN-----FRALCPFHSEKTPSFYVSPAKQIFHC 84

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIRLI 121
           F C V G+ + F+  +   +F E+++ LA  A + +     +  K     K + +LI L 
Sbjct: 85  FGCGVGGNVIHFVMRMENLTFTEALKVLAEKAKIDIDFSQSQSAKDRALAKQKEELINLH 144

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           +   ++F   L   ++     Y+ +R I     + F LG+ P+         ++      
Sbjct: 145 KDCFEYFREQLYLRKNIEAVKYIIKRRIAKDTAKRFGLGFCPEKNDLYDRLSQKYSKEII 204

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPETI 240
            +      I  + +  +Y RF  RLIFPI  +  +VIAFGGR +S    + KY+NSP+T+
Sbjct: 205 DLSG----IFLERNGKNYCRFEGRLIFPIFDTMNRVIAFGGRIISDASAAPKYMNSPDTL 260

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY    A                 +  ++VEGYMDV++L Q G+ N V  LGT
Sbjct: 261 IFSKSRILYGLNIAKQS------------KENEFVVVEGYMDVIALHQEGIDNAVGVLGT 308

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT+    LL +    +VLC D D+ G +AA ++ D+       G  V  + L   +DPD
Sbjct: 309 ALTQDHSFLLRRYKNEVVLCLDSDEAGKKAAIRSADI---LYQNGLMVRVMELEGAKDPD 365

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQK 419
            +I+ +GK AF      S+ ++D   K           D++           +  I ++ 
Sbjct: 366 EYIKRFGKDAFLLKKQNSMFVIDYKVKELKNQYDLTKSDQKFRFVREYFEKILIPISNEV 425

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y + + D           E S   +   K   + +     Q+            + 
Sbjct: 426 ERQEYIKKLSDLTGVNENVISKEFSKTTQKELKRIENINYFKQIQQ-----KPVLSDFEM 480

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  LL          +E    L +  +   +++ +++ + +   E        +  
Sbjct: 481 LKKNENYLLSLYTEWAPKSEEIKNLLTEEDFYTEDVKNIFTAVKNLINEGMELSYSMLLS 540

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            + +     +L  L          + T +  I +          L  + + L      ++
Sbjct: 541 FVTDE---SILFDLTSFSSKGFENADTAKKAIEE----------LKVKIKTLG-----LK 582

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHI 626
            ++     + +  K   ++  L ++  
Sbjct: 583 LELKAAQQQNDNLKITQILDELKKLKA 609


>gi|254389039|ref|ZP_05004269.1| truncated DNA primase [Streptomyces clavuligerus ATCC 27064]
 gi|197702756|gb|EDY48568.1| truncated DNA primase [Streptomyces clavuligerus ATCC 27064]
          Length = 492

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 122/462 (26%), Positives = 210/462 (45%), Gaps = 28/462 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D IK +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  +  KG 
Sbjct: 4   RINDDDIKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPGKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119
           ++CF C   GD ++F+  +   +F E+V+RLA  AG+ L   +       +   +  L+ 
Sbjct: 60  FHCFGCQEGGDTIAFVMKIDHLTFSEAVERLAGTAGITLRYEEGGYNPSHQRGERIRLVE 119

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             +VA  ++   L  +        +L ERG D  A   F +GY+P     L   LR KGF
Sbjct: 120 AHKVAAQYYAEQLENSPEAAAGRTFLAERGFDQAAALHFGVGYSPQGWDHLTRFLRGKGF 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           S++++  +GL    +      DRFR RL++PIR   G V+ FG R L + ++  KYLN+P
Sbjct: 180 SDKELTLSGL--SQEGRRGPIDRFRGRLMWPIRDISGDVVGFGARKLHESDNGPKYLNTP 237

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET ++ K + LY    A   + +          +S  ++VEGY DV++   AGV   +++
Sbjct: 238 ETAIYKKSQVLYGIDLAKKEIVR----------TSTAVVVEGYTDVMACHLAGVTTAIAT 287

Query: 298 LGTALTEYQLRLLW-----KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            GTA     +++L        +  ++  FDGD  G +AA +A +            +  +
Sbjct: 288 CGTAFGGDHIKILRRLLMDHATAEVIFTFDGDAAGQKAALRAFEDDQKFAA---ETSIAI 344

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              G DP       G  A E L+    PL +   ++  +  +   P  +A         +
Sbjct: 345 TPGGMDPCDLRLAEGDAAVEALVGSRTPLFEFAMRQIVQRHNLENPAGQAGALDEAAPVV 404

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
             IK+  +++  +  +   +  L  +++ +       W ++ 
Sbjct: 405 AKIKNPAIQHGSAVQLAGMIGILDTQFVVKRVAQLARWARDR 446


>gi|157965029|ref|YP_001499853.1| DNA primase [Rickettsia massiliae MTU5]
 gi|157844805|gb|ABV85306.1| DNA primase [Rickettsia massiliae MTU5]
          Length = 617

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 170/633 (26%), Positives = 299/633 (47%), Gaps = 50/633 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    +F + L   I IS+++ Q V   R+      G+Y   CPFH EKTPSF  +DSK 
Sbjct: 23  MRVAPEFYEFLRNRINISDVVRQKVALTRK-----SGNYVGLCPFHQEKTPSFTVSDSKR 77

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F+YCF C   GD + F S + G S+ ES  +LA   G+ +P +  K ++  +   +++ +
Sbjct: 78  FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLATDYGIEIPKLTAKQKEFYEESDEILNI 137

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L       + +YL ER I    ++ F +G+AP +    +    +     
Sbjct: 138 LELANKFFRTQLT----PEILHYLHERSITEETVKEFSIGFAPKNNKIEKFFHDKNIDII 193

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +      +    +     Y+ F NR+  PIR+   +++ FGGR L +G   KYLNSPET 
Sbjct: 194 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETT 250

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY    A++   K           +  ILVEGY DV++L QAG    V+SLGT
Sbjct: 251 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSETVASLGT 300

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ++TE  L  LW+    I+LC DGD+ G++A+ + I+L L  +    +++F+ L  G DPD
Sbjct: 301 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPSGLDPD 360

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +   G   F KLI + + L +M+W  E   +SF T +++A LE +LKN  + I D  L
Sbjct: 361 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKSFKTAEKKANLEKNLKNYCSKISDSDL 420

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y +  ++++ Q                  N     +K  ++    + ++      + 
Sbjct: 421 KASYYRFFKNQIWQ------------------NLVTTQKKATTKNSKLAPIISSHGYSEL 462

Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            + E A    L+  P IL+E      + ++ ++N  L++  ++  ++ ++       EI 
Sbjct: 463 EMLEHAFCALLVKFPIILEEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNN-VEASEIT 521

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +  F ++   L +        S       +D+   +     L+K++ L++ Q+E  
Sbjct: 522 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNIRLDLLWQW-----LHKKYYLINLQQEYA 576

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                  T   + EK  +    + ++  ++  +
Sbjct: 577 IT--INSTDNHDFEKVLLYKKEILKIANELQVL 607


>gi|1094407|prf||2106154A DNA primase
          Length = 642

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 162/673 (24%), Positives = 271/673 (40%), Gaps = 84/673 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           +   + + DL   + I++LI QYV   R   N     Y   CPFH EKTPSF+ N  KGF
Sbjct: 3   SLDTEVVNDLKSKVNIADLISQYVALSRTGKN-----YIGLCPFHGEKTPSFNVNAEKGF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   GD + FL       F+++V+ LA  AGV L + D + E+K      L  + 
Sbjct: 58  YHCFGCGRSGDAIEFLKEYNQVGFVDAVKELADFAGVTLNISDDR-EEKNNPNAPLFEIN 116

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             A   ++  L +    +R   YL+ERGI    I+ F +G AP+    + ++L  K    
Sbjct: 117 NQAARLYNILLMSTELGERARKYLEERGITDDVIKRFNIGLAPEENDFIFKNLSNK---F 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238
           ++ I A   +   ++   +D F NR++FPI +  GQ I F GR   + +    KY+N+  
Sbjct: 174 DEEIMAKSGLFHFSNNKVFDAFTNRIMFPITNEYGQTIGFSGRKWQENDDSKAKYINTSA 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K   L+N   A   + K             + L+EG+MDV++  +AG+ NVV+S+
Sbjct: 234 TTIFDKSYELWNLDKAKPTISKQ----------HEVYLMEGFMDVIASYKAGINNVVASM 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE  +R L +++ + VL +DGD  G  A YKAIDL     I  + V  V +  G D
Sbjct: 284 GTALTEKHVRRLKQMAKKFVLVYDGDSAGQNAIYKAIDL-----IGESAVQIVKVPEGLD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD + + YG      L+                  +      + +    +   I  +   
Sbjct: 339 PDEYSKNYGLKGLSALMETGRIQPIEFLIDYLRPENLANLQTQLDFIEQISPMIAKLPSI 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS--------- 469
             +  Y + + + L       + +     R   K   H      +  L +S         
Sbjct: 399 TAQDAYIRKLVEILPDFEYNQVEQAVNLRRENMKITDHPVSNLDASSLTESFTDENDYSS 458

Query: 470 ----------------------------------SLVKGKLSKKPSLREAALLLTLINHP 495
                                               V+     +    E  LL  +I H 
Sbjct: 459 LESVMPVDFEETYYENNVKTQQTYRRSESAQVVQPSVQVPKLSRSEKAEEMLLHRMIYHS 518

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
           ++L++  Q+  + R+ +   Q L+  +  + +  +      +   L +       + L  
Sbjct: 519 SVLKKFSQD-ENFRFVHKRYQDLFDKILLEAMVYEQIDESHLASELSDEE-----RSLFY 572

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           Q+    L    +   I D+   +   +           + EE+ +Q+A     G  E+  
Sbjct: 573 QIISLDLPDTASSQEINDLVSIFSNEME--------QIKFEELIQQLATAEKAGNKERVL 624

Query: 616 ILISILHEVHIQI 628
            L   +   + +I
Sbjct: 625 ELTLQIINQNEKI 637


>gi|169351084|ref|ZP_02868022.1| hypothetical protein CLOSPI_01863 [Clostridium spiroforme DSM 1552]
 gi|169292146|gb|EDS74279.1| hypothetical protein CLOSPI_01863 [Clostridium spiroforme DSM 1552]
          Length = 583

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 144/627 (22%), Positives = 282/627 (44%), Gaps = 52/627 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I ++   + I +++G Y+   ++  N     Y   CPFHD+  PS   +  K  
Sbjct: 3   RLSEKKIDEIRQSVDIVDVVGNYLSLKKKGRN-----YVTLCPFHDDSNPSLTISPEKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIR 119
           Y CF C   G+  +FL   L   +IE+V+ +A++  V +   + +   +  ++    L +
Sbjct: 58  YMCFVCGNGGNVFNFLKNYLKIPYIEAVKMVASMGNVDISEYNLERRVQLVDQKLEPLYK 117

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           + + A   +HH L          YL+ R ++   IE F++GYAP++   L +   + GF 
Sbjct: 118 MHDEANKIYHHYLNTKLALPAKEYLNARSMNDEIIETFEIGYAPNN-NILLKAFEKMGFD 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238
           +  + E+GL+I+ +     YDRF +R++FP+  + G+V+ F GR   + ++  KY+NSPE
Sbjct: 177 KIAMYESGLIIENNQG---YDRFSDRIMFPLHDTSGRVVGFSGRIYQQSQNESKYMNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + +F KG+ LYN+  A+  ++           + F+I+ EG+MDV++L +AG++N V+ +
Sbjct: 234 SKIFIKGELLYNYHRAIEEVR----------QAGFVIVNEGFMDVIALYKAGIKNAVAIM 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT+  +RLL +LS  + LC DGD  G +A  KA D+    +  G  V  + LS   D
Sbjct: 284 GTALTKGHIRLLKRLSKVVYLCLDGDQAGKKAMIKASDI---LINEGFSVKIIDLSDDLD 340

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD F+   G      LI   L  +D       E  + +  +ER +    + + I+++ D 
Sbjct: 341 PDEFLEKKGVDELNALIKRPLSSLDFKMNYYYELTNMDNYEERKKYLEMITSEISNLDDM 400

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             + YY Q +  +     +   +  +            +     S RL+           
Sbjct: 401 IDQDYYIQQLEKKSGFSKEIISSLVNKQSVTKINQPTKQVFYQQSVRLI----------D 450

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           K S  E  LL  ++N   +    Y+  A   + N+  + + S++   +  +      ++ 
Sbjct: 451 KYSKAERDLLYYMMNDKNVAM-MYEAKAGFMF-NDNYRIIASYIVDYYRHEVVLEIADLI 508

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +    + + ++ +            +         Y + +    + + +  + +E+
Sbjct: 509 SSIEDENLVKNIVEISQL--------NLPKLKDTKAINDYIETI----KEKTVKIKIDEL 556

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVH 625
            K +       + ++ A ++  +  + 
Sbjct: 557 TKALKD---TFDPKQKAQILKEIIALK 580


>gi|326406053|gb|ADZ63124.1| DNA primase [Lactococcus lactis subsp. lactis CV56]
          Length = 637

 Score =  311 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 159/673 (23%), Positives = 267/673 (39%), Gaps = 84/673 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           +   + + DL   + I++LI QYV   R   N     Y   CPFH EKTPSF+ N  KGF
Sbjct: 3   SLDTEVVNDLKSKVNIADLISQYVALSRTGKN-----YIGLCPFHGEKTPSFNVNAEKGF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   GD + FL       F+++V+ LA  AGV L + D + E+K      L  + 
Sbjct: 58  YHCFGCGRSGDAIEFLKEYNQVGFVDAVKELADFAGVTLNISDDR-EEKNNPNAPLFEIN 116

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             A   ++  L +    +R   YL+ERGI    I+ F +G AP+    + ++L  K    
Sbjct: 117 NQAARLYNILLMSTELGERARKYLEERGITDDVIKRFNIGLAPEENDFIFKNLSNK---F 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238
           ++ I A   +   ++   +D F NR++FPI +  G  I F GR   + +    KY+N+  
Sbjct: 174 DEEIMAKSGLFHFSNNNVFDAFTNRIMFPITNEYGHTIGFSGRKWQENDDSKAKYINTSA 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K   L+N   A   + K             + L+EG+MDV++  +AG+ NVV+S+
Sbjct: 234 TTIFDKSYELWNLDKAKPTISKQ----------HEVYLMEGFMDVIAAYKAGINNVVASM 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE  +R L +++ + VL +DGD  G  A YKAIDL     I  + V  V +  G D
Sbjct: 284 GTALTEKHIRRLKQMAKKFVLVYDGDSAGQNAIYKAIDL-----IGESAVQIVKVPEGLD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD + + YG      L+                  +      + +    +   I  +   
Sbjct: 339 PDEYSKNYGLKGLSALMETGRIQPIEFLIDYLRPENLANLQTQLDFIEQISPMIAKLPSI 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS--------- 469
             +  Y + + + L       + +     R       H      +  L +S         
Sbjct: 399 TAQDAYIRKLVEILPDFEYNQVEQAVNLRRENMTITDHPVSNLDASSLTESFTDENDYSS 458

Query: 470 ----------------------------------SLVKGKLSKKPSLREAALLLTLINHP 495
                                               V+     +    E  LL  +I H 
Sbjct: 459 LESVMPVDFEEAYYENNVKTQQTYRRSESAQVVQPSVQVPKLSRSEKAEEMLLHRMIYHS 518

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
           ++L++  Q+  + R+ +   Q L+  +  + +  +      +   L +         L  
Sbjct: 519 SVLKKFSQD-ENFRFVHKRYQDLFDKILLEAMVYEQIDESHLASELSDEEC-----SLFY 572

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           Q+    L    +   I D+   +   +           + EE+ +Q+A     G  E+  
Sbjct: 573 QIISLDLPDTASSQEIKDLVSIFSNEME--------QIKFEELIQQLATAEKAGNKERVL 624

Query: 616 ILISILHEVHIQI 628
            L   +     ++
Sbjct: 625 ELTLQIINQKKKL 637


>gi|289523411|ref|ZP_06440265.1| DNA primase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503103|gb|EFD24267.1| DNA primase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 584

 Score =  311 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 166/616 (26%), Positives = 272/616 (44%), Gaps = 43/616 (6%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I+++   + I +++G YV   +         Y A CPFH EKTPSF+    + F++CF C
Sbjct: 6   IEEIKKRLDILDIVGDYVQLKKVGKG-----YRALCPFHSEKTPSFYVMPDRQFFHCFGC 60

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
              GD +SF+  + G SF ++++ LA   G+ +       E +     +L  ++E A   
Sbjct: 61  GKGGDVISFVMEIEGLSFPDAIELLANRVGIKID----SNETRRNEW-NLSEVMEKALKI 115

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
           +  SL++A  +    YL +R +       F++G+AP S   L   L + G   +  IE G
Sbjct: 116 YRDSLESAGGEVARKYLIQRRLLEKWWSRFEIGWAPPSWDYLWRLLNKAGIPSKAAIECG 175

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247
           L+I+G      YDRFR R+IFPIR   G++I FGGR++  GE  KY+N+PE+ LFHKG+ 
Sbjct: 176 LVIEGQR--GLYDRFRGRIIFPIRDVIGRLIGFGGRSI-AGEGAKYINTPESPLFHKGRC 232

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           LY    A + +++  R           ILVEGYMD + L  +G    V+SLGTALTE Q 
Sbjct: 233 LYLLNVAKDAMREKGRA----------ILVEGYMDAIRLHISGFGESVASLGTALTEEQA 282

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
            L+ + +    +C+D D  G  AA + + L       G +V  V+L  G DPD F+   G
Sbjct: 283 NLISRFADVCYVCYDADTAGQEAAIRGMYL---LQASGLQVKVVVLPHGVDPDEFLSKEG 339

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
           + AF++L+ +SL L     K     ++      R +    L    + I    L  + SQ 
Sbjct: 340 ERAFKELLSQSLHLPLYHLK--IREKALKDLSLRKKAVEELLESFSGISLPDLAPFMSQI 397

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
                   +       +      +     + +   S   +  S  + + S     +EAAL
Sbjct: 398 ASALEVPRYALENMLLNFGANKTRAEDEKKGKSAKSSVYINESKKQDEKSLAVDAKEAAL 457

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              L N P       +E       +  ++ L + L +          EE+ +R    G  
Sbjct: 458 FALLWNDPEKRHHFREEEIYPLISDERIKTLVAALIN------GESTEELEKRWLNSGDL 511

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             L+ L   + +A         +           +    R R +  + +E+  ++ +  A
Sbjct: 512 FPLQTLA--LGNAFCEQFEEGISP-------WDVIVGELRLRSIKFRYDELYSKMLKGEA 562

Query: 608 KGEAEKTAILISILHE 623
             +  K    I+ L +
Sbjct: 563 NYDEIKEMRKIASLLK 578


>gi|283851054|ref|ZP_06368338.1| DNA primase [Desulfovibrio sp. FW1012B]
 gi|283573450|gb|EFC21426.1| DNA primase [Desulfovibrio sp. FW1012B]
          Length = 573

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 162/626 (25%), Positives = 259/626 (41%), Gaps = 61/626 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +    +  +     I+ ++G+YV           G     CPFH E   SF+ +  KG
Sbjct: 1   MKHDAGAVAAVKARANIAEIVGRYVALRPVG-----GRLVGPCPFHQETKGSFNVHPDKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLI 118
           F++CF C   GD + F   + G  F E ++RLAA  GV L     DP+  ++++++ D +
Sbjct: 56  FFHCFGCQASGDVIDFYCRINGLEFREGLERLAAEVGVDLGQARRDPRQAERKRVRDDCL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + E+A  ++ H L  A       YL  R + +  IE F LG +P     L+  LR +GF
Sbjct: 116 AMHELAERYYRHVLGTAEGTAAREYLTRRRVSAEMIERFALGVSPAGWQGLQGVLRSRGF 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S++  + AGLL  G N    +DRFR+RL+FPIR   G+V+AFGGRT+  G+  KYLNS E
Sbjct: 176 SDDGGVLAGLLSLGKNG-RVWDRFRDRLMFPIRDGGGRVVAFGGRTMGDGDP-KYLNSAE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ KG++LY  + A  ++ K+ R            L EGY+DV++L Q G       L
Sbjct: 234 TPIYTKGQHLYGLYEARPHIAKTRRA----------FLTEGYLDVITLHQFGYGEACGVL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA+T  Q + L   SPR+ L FDGD PG +AA +A  ++L     G     V L  GED
Sbjct: 284 GTAMTLEQAKRLAGFSPRVDLVFDGDAPGRKAALRAAQMLLTL---GGGCRVVPLPDGED 340

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            DS +   G+  FE     +   +        E  S        E+       +  + D+
Sbjct: 341 VDSLLHAKGRDGFEACQARAEDGLTFCLHTVRETYSPK------EMAAWAVEFLAGLGDE 394

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            LR  +   +   L     +     +      ++ A+    +     L            
Sbjct: 395 SLRAVFIPRVASGLGLAEIELRGFLASGQGRPRQPAKPASPRSGVLELSS---------- 444

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
               R+A LL   +  P  +                       +                
Sbjct: 445 ----RDAQLLAFAVRCPQYVAALA----------------REGVADILSTGGARD---FF 481

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            +L   G  EL  +LD       + +        D    + + + ++      + ++  I
Sbjct: 482 AKLAGGGPDELATRLDEAQTAFWVRTQLEPVLSEDEASAFFEEICVFLHEARENDRRRAI 541

Query: 599 EKQIAQVTAKGEAEKTAILISILHEV 624
            + I +   +G  E    L+  L  +
Sbjct: 542 MEAIRRAQEQGAHEDALRLLGELQAL 567


>gi|254467852|ref|ZP_05081258.1| DNA primase [beta proteobacterium KB13]
 gi|207086662|gb|EDZ63945.1| DNA primase [beta proteobacterium KB13]
          Length = 578

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 162/612 (26%), Positives = 281/612 (45%), Gaps = 45/612 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI+++L  I + +++ Q V   +   N     Y ACCPFH EK+PSF  + SK FY
Sbjct: 2   IPESFIQEILNRIDVVDVVDQRVKLKKAGAN-----YVACCPFHQEKSPSFTVSPSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G  +SFL    G +FIESVQ +A   G+ +P     ++K +  +  L  +++
Sbjct: 57  HCFGCGAHGSAISFLMEYDGLTFIESVQSIANQLGLAVPNDQSNVKKDKADEFKLEEILK 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A   F  +L+++  +    YL +RG+       F++GYA D    L++        + +
Sbjct: 117 RANQHFKKNLRSS--ELAINYLKKRGLTGTVAREFQIGYASDDWQGLKKEFENYEEPKLQ 174

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                  +  ++S   YDRFRNR+IFPI +++  +I FGGR ++K +  KY NSPET LF
Sbjct: 175 TAGL---VQKNDSGKIYDRFRNRIIFPIINAKDNIIGFGGRVINKEDQPKYYNSPETPLF 231

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   +Y    A   ++            + I++VEGYMDV+SL Q G++N V++LGTA 
Sbjct: 232 KKSYEVYGLPQAKKGIR----------EDNNILIVEGYMDVISLYQHGIENAVATLGTAT 281

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T Y L+ L + S +I  CFDGD  G  AA+KA++  +  L       F+ L  GEDPD+F
Sbjct: 282 TIYHLKKLIRYSKKITFCFDGDHAGKEAAWKALNTAVEILEDDYEFYFLFLPEGEDPDTF 341

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I       F+K I  + PL + + KR TE     + + + +   + +     I   K + 
Sbjct: 342 ITKNSIQDFKKYIDHATPLTEFIVKRLTEKNDLTSQENKIKFINNFEPIYKKINSNKYKI 401

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
           +  + I D +    ++              +++       S     S   K K       
Sbjct: 402 FLIKRIADLIHFSQREIEKMMRIESAENYSSSQQIKY---SPSTRNSLTAKRKY------ 452

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQR 540
                +L L+  P +     +         +E   L++ +     E          +   
Sbjct: 453 -----ILILVMKPELFNSDDEVFFQSNLIEDE---LFNKIKKLLEENDSNIKNTASLLHS 504

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE- 599
           L  +    +L +L +Q     +   +   ++++  +G Q + +        S+Q   ++ 
Sbjct: 505 LVNKVDENILNELQKQ-----MMDYSENIDLLEEFKGIQNSFSHQLNKTQQSQQFAALKN 559

Query: 600 KQIAQVTAKGEA 611
           K++++++ + + 
Sbjct: 560 KKLSELSDEEKE 571


>gi|94269977|ref|ZP_01291621.1| DNA primase [delta proteobacterium MLMS-1]
 gi|93450989|gb|EAT01966.1| DNA primase [delta proteobacterium MLMS-1]
          Length = 523

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 152/541 (28%), Positives = 240/541 (44%), Gaps = 41/541 (7%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           R+ ++ +     I+ +IG++V   R   N         CPFH EKTPSF  N  +G ++C
Sbjct: 18  RETVRLVKETADIAEVIGEHVTLQRAGANL-----KGLCPFHAEKTPSFMVNPGRGSFHC 72

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIE 122
           F C   GD  SFL       F E++++LAA   +PL      P+  ++ + +  L  +  
Sbjct: 73  FGCGEGGDVFSFLMLYHRVGFPEALKQLAARYHIPLAETSLSPQQREEARQREALYAINA 132

Query: 123 VATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFSE 180
            A   +H   L +    +   YL +RG+ +  IE F+LGYAP     LR+   R+K    
Sbjct: 133 RAAALYHRFLLHDPAADQARQYLAQRGMTAAIIERFQLGYAPPRWDFLRKTLEREKFTPA 192

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
                  L          YDRFR R+IFPI    G+V  FGGR L +GE  KYLN+ ET 
Sbjct: 193 TAAQAGLLASKESGGGHYYDRFRQRIIFPIIDQTGRVAGFGGRILGEGEP-KYLNTAETP 251

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY      + L+K          +   +LVEG  D+L+L   GV+ VV+ LGT
Sbjct: 252 IFDKSRILYGLHQHRDALRK----------ARSCLLVEGNFDLLALAAGGVEEVVAPLGT 301

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  QLR+L      +VL FDGD  GL+AA +A+ L L   + G      +L +G+DPD
Sbjct: 302 ALTAGQLRILRGYVEEVVLLFDGDSAGLKAAMRAVPLFLAEKLSG---RVAVLPQGQDPD 358

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ-K 419
           S+IR +G+   ++L+ E   L + ++ R          + +  +   L   ++ + DQ  
Sbjct: 359 SYIRAHGRQGLQELLAEGQSLAEFVFSRLAA-EHGLGVEGKNRIIAELAPMVHELNDQHL 417

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR  +     +RL    Q++                    +  ++R + +   +     +
Sbjct: 418 LRTRFIAHFSERLGISSQQFGQSIG---------------RPAARRPVATPPAEAGEEWQ 462

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +  E  +   L  H   L +               + L   + S   +     PE + +
Sbjct: 463 LTANERRIFAFLFLHGQYLPDFLAAGLQEYVSGRAARALLELMISQ-QQDFINAPEVLLE 521

Query: 540 R 540
            
Sbjct: 522 H 522


>gi|256841519|ref|ZP_05547026.1| DNA primase [Parabacteroides sp. D13]
 gi|256737362|gb|EEU50689.1| DNA primase [Parabacteroides sp. D13]
          Length = 705

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 153/710 (21%), Positives = 272/710 (38%), Gaps = 106/710 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++ ++V   +R  N     Y   CPFH +K+PSF+ + SK   
Sbjct: 2   IDQPTIDRILDAANIVDVVSEFVTLRKRGIN-----YVGLCPFHSDKSPSFYVSPSKNIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CF+C   G  + F+      S+ ++++ LA    + +   +   ++K+    +  ++ +
Sbjct: 57  KCFACGEGGTAVHFIMKHEQLSYFDALRFLAKKYNIEIQERELTEKEKQIRSDRESMLIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A  +F   L    + +     Y  ERG+    I  F+LGY+ D R +L +   + G+
Sbjct: 117 NSWAGQYFSTLLHEHVEGKSVGMRYFAERGLREDIIRKFQLGYSLDQRDALYKTAIKAGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
            +E + + GL+I   ++    DRFR R+IFP+ +  G+V+AFGGR L K E   KY+NSP
Sbjct: 177 KKEFLEKTGLVI-AYDNGNVNDRFRGRVIFPVHTLSGKVVAFGGRVLKKDEKTAKYVNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK   LY  + A   + K  R            LVEGYMDV+ + Q GV+NVV+S
Sbjct: 236 ESEIYHKSNELYGIYFAKQAIMKQDR----------CFLVEGYMDVIGMHQVGVENVVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT+ Q+RL+ + +  I + +DGD  G++AA + ID+    L  G  V  VLL  GE
Sbjct: 286 SGTALTQGQIRLIHRFTNNITVLYDGDAAGIKAALRGIDM---LLEEGMNVKVVLLPAGE 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R +  + F + I ++         +     +   P +R+ L   +   +  I D
Sbjct: 343 DPDSFARSHSASEFAEFISQNETDFIRFKTKLLLAEAGGDPIKRSALISDIIRTVAIIPD 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHS--------GYGRYWKKNARHRDQKGPSQR---- 465
              R  Y +     ++   Q  + E +               +N         +      
Sbjct: 403 NIARSVYIRECSTTMEIDEQVLLNEVNKIRLNKEENQAAKSARNTPPVQPPANTIPEYPD 462

Query: 466 --------------------------------------------LMQSSLVKGKLSKKPS 481
                                                           ++          
Sbjct: 463 FPGYQPYTPEEANTLPPENIPPPPPEDYIPEEEAGPPPTPPYEVPTAPNIQVQPKRSPFE 522

Query: 482 LREAALLLTLINHPA--ILQEQYQE------------------LADIRYDNNELQKLWSF 521
             E ALL  ++ +    +     +E                    D+ +     +++   
Sbjct: 523 AYELALLRYIVRYGERVLYDYVDEETNEHVIMRVADYIRFDLERDDLTFYTPAFKQMLDE 582

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQ 579
                  + +           +     L   L  D+                 D      
Sbjct: 583 AAEHCQNEGFMASRYFLAH-PDPNISRLAANLISDKYQLSKYHTKFRELEQEEDKLDYLV 641

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI---SILHEVHI 626
                  +   +  + ++I+ +I +   KG+ E    L+   + L+E+  
Sbjct: 642 PREIYSMKDAYILYKIKDIQAKIKEAQNKGDMELIFDLMKQNAHLNEIKN 691


>gi|149198746|ref|ZP_01875789.1| DNA primase [Lentisphaera araneosa HTCC2155]
 gi|149138182|gb|EDM26592.1| DNA primase [Lentisphaera araneosa HTCC2155]
          Length = 611

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 146/632 (23%), Positives = 284/632 (44%), Gaps = 39/632 (6%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           + +     I ++IG +V   +         +   CPFH+EKTPSF+ N +  FY+CF C 
Sbjct: 10  QQVKDRNDIVDIIGAHVKLKKNG-----PTFLGLCPFHNEKTPSFNVNQNDQFYHCFGCG 64

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV----VDPKIE-KKEKIQTDLIRLIEV 123
             GD L F+       F +++++LA+ A V LP       P+   K++  +  L  +++ 
Sbjct: 65  ASGDVLKFVQEYESLDFRDALEKLASRANVILPEWGKGQSPEERLKQKNEKEALFDVLDK 124

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
           AT+FF   L   +      Y   RG++   I  ++LGYAP+S  ++ +  +Q   S+E +
Sbjct: 125 ATNFFKQQLLLPQGAEALKYAQNRGLNQEVINNYRLGYAPNSWDAVMKWAKQHSISDELL 184

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILF 242
             AGL    +    +YDRFRNRL+FPI+   G+VIAF  R L K  ++ KY+NSPET +F
Sbjct: 185 ATAGLT-KQNEQGKTYDRFRNRLMFPIQDISGRVIAFSARVLEKDSKAAKYINSPETPVF 243

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           HKG  LY    A  +L+           S   ++ EG +DV++  +AGV+N +++ GTA 
Sbjct: 244 HKGNVLYGLHIAHKHLK----------ESEHFVICEGQLDVIACHRAGVKNAIAAQGTAF 293

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T+    ++ + +  + LCFD D+ G +AA K +++    L  G     + L  GEDPD+ 
Sbjct: 294 TDQHASMIARYAKHVKLCFDADNAGKKAAVKCLNI---LLPKGVIPEIISLEEGEDPDTV 350

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +   G    ++ +   +  VD +    ++    +   E+ ++   L + +  + +  L  
Sbjct: 351 LSEQGAEVLKEKLSGGMNFVDFIL---SDYGPSSPSQEKVKISEFLLDILAKMPN-VLMG 406

Query: 423 YYSQAIRDRLQQLFQKYITEHS---GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +   +  +LQ   Q    +        R  K+  + + +   + + +    ++     K
Sbjct: 407 DWHLRLASKLQLDAQAISEQLRYLVYNKRDHKQYMKPQAEFQQAPQNVAPPPLRLNKISK 466

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            S+ E  L+   ++        ++   D+  + +E      F+ S      +    +   
Sbjct: 467 RSVAEIELIALALSQEVFANLVFENTMDLEPETSESSLALHFINSHIEMGNWKDCSQDLA 526

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                 +  ++KQ       +    +T   +  ++ Q     L    +   + ++ E I+
Sbjct: 527 NSYPNVYELVIKQNKISSYHSR---STEGDDFDELMQLINDCLNQISKA-SIEQKYEVIK 582

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +++    ++ + +    L+     ++  +  +
Sbjct: 583 EKLL---SEQDPQIKQDLLKEYMALNQDLKSL 611


>gi|325849222|ref|ZP_08170673.1| DNA primase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480222|gb|EGC83289.1| DNA primase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 553

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 153/577 (26%), Positives = 262/577 (45%), Gaps = 33/577 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D   ++L +  I  +IG YVD  +         Y   CPFH+EKTPSF  +D K  +
Sbjct: 4   ISDDKKNEILENSDIVAIIGDYVDLKKSGN-----SYKGLCPFHNEKTPSFTVDDKKQLF 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD +SF+    G S+I+S++ LA+ AG+ +   D K  ++ K    L  + +
Sbjct: 59  HCFGCGEGGDVVSFIMHKEGLSYIDSMKYLASKAGIKID--DSKSSRENKRLNRLYDINK 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F+ +L   +  ++  YL  RG  S+ +  F LG+A +S   L  ++++K +  + 
Sbjct: 117 DIMMYFYKNLLTDKAGQI--YLKNRGFRSNIVNTFMLGFAKNSWDDLLSYVKEKDYLLDD 174

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           I   GL I    +   YD++RNRLIFPI +  G+VI FGGR++      KYLNSPE+ +F
Sbjct: 175 IENLGL-IKKSQNGKYYDKYRNRLIFPIINHYGKVIGFGGRSI-DSTMPKYLNSPESEVF 232

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K  NLY          K             IILVEGYMDV+ L   G+   V+SLGT+L
Sbjct: 233 KKRYNLYGLNIFKKQSNK------------DIILVEGYMDVIGLNNQGIDQAVASLGTSL 280

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q +LL + +  + +C+D D+ G++A  +AI++    L  G + N + L +G DPD F
Sbjct: 281 TNDQAKLLKRYAKNVFICYDEDNAGIKATDRAIEI---LLDEGIKPNIISLEKGLDPDDF 337

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++ YG+ AF K + E+  + +  + +  +  + +  +E+ E        +  IK    R 
Sbjct: 338 VKKYGRDAFIKKMDEASDVYNYKYNKILDIYASSKENEKFEKLNLFIEFLASIKSDLTRE 397

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKK--NARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            +   +                 Y   +KK  N +  D+    +     S++  +     
Sbjct: 398 IFVNNVSKLFDIDKSTLKESVLKYNDNYKKTFNKKFSDESSFKKNNKNQSVLVERKKYSV 457

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL----FSDFVEQKYFLPEE 536
           S+ E   L   +N     +E       +   +  + K+ +++         E      + 
Sbjct: 458 SINELETLRLYLNQRDDYKEFEDFFDQV-LVDENILKIKAYIEKNGMEKISENFTNEDQF 516

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           I   + ++    +  +L  ++          +    D
Sbjct: 517 IIDYIKDKSNKIVANELKDKINLENRRKLLKKLRNRD 553


>gi|294791094|ref|ZP_06756252.1| DNA primase [Scardovia inopinata F0304]
 gi|294458991|gb|EFG27344.1| DNA primase [Scardovia inopinata F0304]
          Length = 696

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 132/691 (19%), Positives = 258/691 (37%), Gaps = 81/691 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ +     + +++   V           G +   CPFH+EKT SF+   S G +
Sbjct: 5   ITKESVEAVRSAADLYDIVSADVTLKPSGA----GSFVGLCPFHEEKTGSFNIRPSLGSW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLIR 119
           +CF C + GD  +++       F ++V+ LA    + L   D     K++    ++ L+ 
Sbjct: 61  HCFGCGLGGDVFAYVEQKENVDFAQAVELLADKYHIELKYEDSGSSSKKRQGSTRSRLLE 120

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           + E    FF   L           L  R       E F  GYAP    +L  HL   G++
Sbjct: 121 VCEQTQKFFASQLSADEALPARKLLAGRNFTQADCERFGCGYAPQGWDTLVRHLASLGYT 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
           ++++I+AG+   G  + + YD FR R  +PIR S G+ + FG R L   + +  KY+N+P
Sbjct: 181 QQEMIDAGVARQG-QNQSVYDYFRGRATWPIRDSTGRTLGFGARRLYDDDRIAAKYINTP 239

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T+L+HK + LY    A  ++               +++VEGY DV++   AGV   V++
Sbjct: 240 DTVLYHKNQVLYGIDIAKPHI----------VDKRQVVIVEGYTDVMACHLAGVDVAVAT 289

Query: 298 LGTALTEYQLRLLWKLS----------------PRIVLCFDGDDPGLRAAYKAIDLVLCH 341
            GTA  +   +++ +                   +++  FDGD  G +AA  A  L    
Sbjct: 290 CGTAFGQEHAKIIRRFISDDSLGAVQLVGPTRGSKVIFTFDGDAAGQKAAIHAFGLDGAF 349

Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER 401
           L    +    +     DP      YG  A   LI +  PL D + +    +        +
Sbjct: 350 LT---QTFVAVARENLDPCDLRIQYGDAAVRSLIADCKPLYDFVIQAAIRSFDAQYTTGQ 406

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA------R 455
                 +   I  I+D  L   Y++    ++    +    E     R  +         R
Sbjct: 407 VGAMKAVAPIIARIRDASLVNAYTRKYAGQIGVDIKTLHQEVQTARRRMRIPTIDAYAPR 466

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSL-------------------REAALLLTLINHPA 496
            R ++ P        L   + S +  L                    E      LI  P 
Sbjct: 467 RRAEEDPRYSSQNQDLDYSRPSNRRQLDHNNAVNQDYYRIDDTVFITEQQFFGILIQSPL 526

Query: 497 IL-----QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR----LCERGFG 547
            +      + +Q L++  +     + L++ L +         P+ +              
Sbjct: 527 AVSSAGNADLFQRLSERCFMTPVFKSLFAGLQAAGGLPDEQTPQGLWIHNLTKASGPILE 586

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            ++ +L          + +++ +         QA    +  +    + +  ++ + ++  
Sbjct: 587 PVINELAVLPLPLSAKNRSSDRHNSGADAAGNQATGGVQTRQPTEAEIKFAQQLLTRL-- 644

Query: 608 KGEAEKTAILISILHEVHIQIHQI-ESQEAM 637
             +A+    +      +  ++ ++ E +E +
Sbjct: 645 -LDADAMRAVGR----LKHRMARLPEGEEKI 670


>gi|221195862|ref|ZP_03568915.1| DNA primase [Atopobium rimae ATCC 49626]
 gi|221184336|gb|EEE16730.1| DNA primase [Atopobium rimae ATCC 49626]
          Length = 628

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 149/663 (22%), Positives = 267/663 (40%), Gaps = 69/663 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              +  + +        L+G+ VD  +R       ++W CCPFH EK+PSF  N   G +
Sbjct: 2   ITDEDKERVRQATDFVQLVGETVDLRQRGN-----EFWGCCPFHGEKSPSFKVNPQTGLW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD  S++       F ++++ LA  AG+ L       +   K +  L   + 
Sbjct: 57  HCFGCSDGGDVFSYVQKRENLEFPDAIRYLADRAGITLSEEKQYTKGPRKKR--LFDCLA 114

Query: 123 VATDFFHHSLKNARDKRL---HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            A DFFH  L   + +       YL  RG      + + LGYAP  R +L  HLR+ GF+
Sbjct: 115 AADDFFHLMLMRGKGEDFAAARSYLAGRGFGGDVCKRWNLGYAP-GRGTLVAHLRELGFT 173

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238
            +++I A L +D     +  D F  R++FPI   RG+ IAFGGR L+K   + KYLN+ +
Sbjct: 174 NKEMIAANLAVDRGGRTS--DWFYGRVMFPIHDERGRTIAFGGRILTKAENAPKYLNTRD 231

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F+KGK+L+ +  A   +           ++   I+ EGY DV+++ +AG  N V++L
Sbjct: 232 TVVFNKGKHLFAYDRAKETIA----------ATGVAIVCEGYTDVIAMHEAGFTNTVAAL 281

Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           GTA     ++LL  +   +I+  FDGD  G RAA +++               V+L   +
Sbjct: 282 GTAFRLDHVKLLERQRVKKIICMFDGDAAGQRAAARSVQ---FIDKTAAAFLCVVLPDNQ 338

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DP  F+  +G  A +  +  + PL+D +++ +      + P  R      L   +  +K+
Sbjct: 339 DPMEFLAAHGADALKPYLARARPLMDFVFESKLGEFDLSIPGNRVAALHALAEILAPLKN 398

Query: 418 QKLRYYYSQAIRDRLQ-----------------------QLFQKYITEHSGYGRYWKKNA 454
             L   Y+  + D L                        Q  Q    E     R   +  
Sbjct: 399 SVLLDEYALRLADTLGVNVAEAKRTITATPIKEISEPRYQNTQPIPPEERTNTRGTSRVD 458

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLR--EAALLLTLINHPAILQEQYQELADIRYDN 512
                   S+ +  +  ++       +    E  LL  + +    ++   Q +A + + +
Sbjct: 459 IASHADNTSRSMASTYDLRALSHDDRTQLQSERELLSAMASRIDAVRAYGQRIAALSWVD 518

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
           +  + +   + +              + +              QV  AG   +    N  
Sbjct: 519 SRHESMAWAMLATPQGTSSHDVIAAAEVVEPHAL---------QVLSAGKVFSAEGMNEQ 569

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---ILHEVHIQIH 629
           +        L  +     L RQ   +  ++ +       E    +      ++E+  ++ 
Sbjct: 570 EKLNLIVDTLEFF----SLKRQIRALRLKMRESPTNKSQEFLEEISRMQVRMNEIGSRLS 625

Query: 630 QIE 632
             +
Sbjct: 626 TSQ 628


>gi|164688098|ref|ZP_02212126.1| hypothetical protein CLOBAR_01743 [Clostridium bartlettii DSM
           16795]
 gi|164602511|gb|EDQ95976.1| hypothetical protein CLOBAR_01743 [Clostridium bartlettii DSM
           16795]
          Length = 581

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 140/602 (23%), Positives = 259/602 (43%), Gaps = 31/602 (5%)

Query: 27  WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFI 86
            ++  +N     Y   CPFH EKT SF  + SK  Y CF C+  GD +SF+       F+
Sbjct: 3   LEKSGSN-----YTGLCPFHSEKTGSFMVSKSKQIYKCFGCNAGGDVISFVMRWENVDFM 57

Query: 87  ESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145
           E+V+ LA   G+ L      + +KK +       +   A  F+  +L   ++   + YL 
Sbjct: 58  EAVKILARKCGITLDRNISEEEKKKIQEINKFREIHTEAARFYFANLLRTKNP-GYEYLR 116

Query: 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR 205
           +RG+    I+ F LGY+P+S  SL  +L  KG+ +  +++ GL+     S   +DRFRNR
Sbjct: 117 KRGLSDKIIKKFGLGYSPNSWNSLMNYLLSKGYDKTDLVKCGLITHKTESNKYFDRFRNR 176

Query: 206 LIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKD 265
           ++FPI +  G+VI FGGR L      KYLNSPET++F+K  NLY    +   ++      
Sbjct: 177 VMFPIFNYNGKVIGFGGRVL-DDSLPKYLNSPETLVFNKRMNLYGLNISKKGIKD----- 230

Query: 266 VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDD 325
                   +ILVEGYMD++SL Q  ++NVV++LGTALT  Q +L+ + +  +++ +D D 
Sbjct: 231 ------DTLILVEGYMDLISLYQNNIENVVATLGTALTIEQAKLIRRFAKNVIISYDSDQ 284

Query: 326 PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDML 385
            G  A  +AID+    L    +V  + L   +DPD FI+ YG   ++K I ES   +   
Sbjct: 285 AGQNATLRAIDI---LLKADIKVKILNLKDCKDPDDFIKKYGFDGYKKAIEESDYYIKFK 341

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
                   +     ++          +  +K    +  Y++ + D               
Sbjct: 342 IDLLKNKYNLKNDTQKMNFVEESTLMLKKLKSPIEKDLYAKYLSDLTNISVDSIRASIGI 401

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
                  N            + +      K+       E   +  L+ +  +      ++
Sbjct: 402 KVSRNYNNK----NNAKHTNVHRKIEQMSKIQDGYLKVETNFIKLLMENKELRNSVISDI 457

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
               +  +E +++++++       K      I  ++      E   +    +    + + 
Sbjct: 458 KSDEFSIDETKEIFNYIIK----NKELDKITI-DKIKSLNISEEYIKNINNIEIEEINTY 512

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           T ++    +++  +  +    +   +  ++   E  + + +     E    ++ +  E+ 
Sbjct: 513 TIDSTKEIIKKIRKNTIENEIKSMSIQIERLSKELDLLKKSNSNTKEVDDKIMKLSLEIL 572

Query: 626 IQ 627
            +
Sbjct: 573 KR 574


>gi|15893253|ref|NP_360967.1| DNA primase [Rickettsia conorii str. Malish 7]
 gi|81527800|sp|Q92FZ7|PRIM_RICCN RecName: Full=DNA primase
 gi|15620472|gb|AAL03868.1| DNA primase [Rickettsia conorii str. Malish 7]
          Length = 595

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 172/633 (27%), Positives = 300/633 (47%), Gaps = 50/633 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    +F + L   I IS+++ Q V   R+      G+Y   CPFH EKTPSF  ++SK 
Sbjct: 1   MRVAPEFYEFLRNRINISDVVRQKVALTRK-----SGNYVGLCPFHQEKTPSFTVSNSKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F+YCF C   GD + F S + G S+ ES  +LA   G+ +P +  K ++  +   +++ +
Sbjct: 56  FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLAIDYGIEIPKLTAKQKEFYEESDEILNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L       + +YL ERGI    ++ F +G+AP +    +    +     
Sbjct: 116 LELANKFFRTQLT----PEILHYLHERGITEETVKEFSIGFAPKNNKFEKFFHDKNIDII 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +      +    +     Y+ F NR+  PIR+   +++ FGGR L +G   KYLNSPET 
Sbjct: 172 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETT 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY    A++   K           +  ILVEGY DV++L QAG    V+SLGT
Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSETVASLGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ++TE  L  LW+    I+LC DGD+ G++A+ + I+L L  +    +++F+ L  G DPD
Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPSGLDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +   G   F KLI + + L +M+W  E   +SF T +E+A LE +LKN  + I D  L
Sbjct: 339 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKSFKTAEEKANLEKNLKNYCSKISDSDL 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y +  +D++ Q                  N     +K  ++    + ++      + 
Sbjct: 399 KVSYYRFFKDQIWQ------------------NLVTTQKKATTKNSNLAPIISSHGYSEL 440

Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            + E A    L+  P IL+E      + ++ ++N  L++  ++  ++ ++       EI 
Sbjct: 441 EILEHAFCALLVKFPIILEEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNN-VEASEIT 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +  F ++   L +        S       +D+   +     L+K++ L++ Q+E  
Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNIRLDLLWQW-----LHKKYYLINLQQEYA 554

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                  T   + EK  +    + ++  ++  +
Sbjct: 555 IT--INSTDNHDFEKVLLYKKEILKIANELQVL 585


>gi|42520228|ref|NP_966143.1| DNA primase [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|99034844|ref|ZP_01314757.1| hypothetical protein Wendoof_01000422 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|42409966|gb|AAS14077.1| DNA primase [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 582

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 168/634 (26%), Positives = 291/634 (45%), Gaps = 70/634 (11%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I  +   + +S+L+G+ V   +R        +   CPFH+EKTPSF  +++KG YYCF C
Sbjct: 4   IDIIKSKLLLSDLVGKKVRLIKRG-----DSFVGLCPFHNEKTPSFSVSNTKGLYYCFGC 58

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
              GD   F+S   G SF E++++LA++ GV LP      ++  K    L   +++A ++
Sbjct: 59  LASGDAFEFISQTEGLSFKEALEKLASVTGVELPKNLSITKEDNK----LFLALDLAANW 114

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
           F        ++ +  YL +R I    I+ FK+GYAP S   L+E+L   G  ++ +I+ G
Sbjct: 115 FAQK-----NQGVVDYLKQRKILPKIIDKFKIGYAPSS--GLKEYLNSSGIEDKILIDIG 167

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247
           L+         +D F +RLIFPI+S  G+VI FGGR LS  +  KYLNSPE+ LF K +N
Sbjct: 168 LVNK-----NFHDYFYDRLIFPIQSIAGRVIGFGGRALSSEQQPKYLNSPESQLFKKREN 222

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           LY    AL+ ++K             I++VEGYMD ++L QAG+ N V+ LGTA++  Q+
Sbjct: 223 LYGLNFALSEIRKK----------QHILVVEGYMDAIALHQAGISNAVAPLGTAISAEQI 272

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR--C 365
           + LW+ +  I +C DGD  G  AA +  +L L  L PG  + FV L   +DP        
Sbjct: 273 KNLWRFAKEISICMDGDSAGRHAATRVAELALLILEPGYTLKFVTLPSNKDPYDICNELE 332

Query: 366 YGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           Y K      +  S  L              +N     P++ + LE      +N I +  +
Sbjct: 333 YKKEDVLTALDHSTKLHSEYLWHHIIDSNLQNYEKLAPEKYSILEHKFMEYVNTISNSSI 392

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R YY     ++         +E     +    N++ R  KG         L++ + +   
Sbjct: 393 RRYYRDYFYNK--------ASELRSSFKKQIFNSKTRATKGEYLHNKSPELIEAEQN--- 441

Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              +A +L   +  P IL     +++ +   + N E+++L   +      +     E + 
Sbjct: 442 ---QAVILRIAVEFPEILNRPIFFEQFSHFEFTN-EMKRLQQRIIDVISNKSNLDKEALL 497

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           Q L +                  +     + ++++ +   +++  +     +L ++   +
Sbjct: 498 QELKQFNV---------------IKYVFEKTSVLNSQLNERKSAEIVWNNIVLLKELNAL 542

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            K+  +    G  +    LI  + ++   I +++
Sbjct: 543 RKERTEARLSGNLDLEERLIEQIKQIESSIQEMQ 576


>gi|78779244|ref|YP_397356.1| DNA primase [Prochlorococcus marinus str. MIT 9312]
 gi|78712743|gb|ABB49920.1| DNA primase [Prochlorococcus marinus str. MIT 9312]
          Length = 677

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 150/628 (23%), Positives = 271/628 (43%), Gaps = 53/628 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           +     I+++     I ++I +++   ++       ++   CPFHD+  PS   + SK F
Sbjct: 4   SIHPRTIQEVKEKADIVDVISEHIVLKKKGK-----EFVGICPFHDDNKPSMTVSPSKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EKKEKIQTDL 117
           YYCFSC   G+ + FL      +F + V  LA    + +  ++       +K+   + +L
Sbjct: 59  YYCFSCGAGGNSIKFLMEFTRANFSDVVLSLAKKNNINVENLEGPQVEAYKKQLSRKEEL 118

Query: 118 IRLIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            +++ V  ++F   L N+   + + Y   +R +    I+ F+LG+AP+S   L  +L + 
Sbjct: 119 YKILRVTKNWFKSQLNNSLGVEAMKYLTSKRNLSKKIIDNFELGFAPNSWNDLFNYLSKV 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           + F    I+ +GL I  DNS   YDRFRNRLI PI   +G+V+AFGGR+L  G+  KYLN
Sbjct: 179 EKFPINLILASGLAISKDNSDKIYDRFRNRLIVPIHDMQGRVVAFGGRSL-DGQEPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ +F KGK L+ F  A + ++K              ILVEGY DV+SL   G+ N V
Sbjct: 238 SPESEIFEKGKMLFAFEKASSNIRK----------RDKAILVEGYFDVISLHSKGITNSV 287

Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352
           +SLGTAL +YQ+  L +   +  I+L FD D+ G+ A  + I  V    +        + 
Sbjct: 288 ASLGTALNKYQISQLCRCTDNKNIILNFDSDNAGILATKRVIKEVESLSLHDQINLKILQ 347

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L   +DPD ++  +    +  LI  S   +D    +  +++     +    +   L   +
Sbjct: 348 LKDFKDPDEYLNSHTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSEIFQSVISSLVKLL 407

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           + +     R +Y Q + ++L +   +   +     R   K  R   +    ++       
Sbjct: 408 SKLPHSSTRTHYLQKVSEQLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQP------ 461

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFL------- 522
                 +    E+ ++   ++ P +      E        ++ + +Q LW  +       
Sbjct: 462 --NEISRREKNESEIIFYYLHCPDLRLFIRDEFLKREINGFNTSYIQSLWEAISKIEQNN 519

Query: 523 --FSDFVEQKYFLPEEIHQRLCERGFGELLKQ---LDRQVRDAGLWSATTEAN-----IV 572
              +   + K    + + +         LL     LD       +             + 
Sbjct: 520 LGLNYLNDLKQSNSQILQKEFSAINLISLLPDYLALDNLESSNKINIFVNPNELFLTLLS 579

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +      L+L +++  L R +  IE 
Sbjct: 580 NPKDNLLGTLSLLEKYNSLKRCRHLIES 607


>gi|330996614|ref|ZP_08320492.1| DNA primase [Paraprevotella xylaniphila YIT 11841]
 gi|329572686|gb|EGG54319.1| DNA primase [Paraprevotella xylaniphila YIT 11841]
          Length = 710

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 160/723 (22%), Positives = 279/723 (38%), Gaps = 111/723 (15%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  +  ++    I +++  +V   +   N     Y   CPFHD++TPSF  + SKG  
Sbjct: 2   IDRATVDRIMDAAQIVDVVSDFVTLRKAGVN-----YKGLCPFHDDRTPSFVVSPSKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CF+C   G+ + F+      S+ ++++ LA    + +       + ++ +  +  +  +
Sbjct: 57  KCFACGKGGNAVHFIMEHEQLSYPDALRYLARKYNIEIKERELTEEEKQAQDERESMFVV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  FF   L N  D R     Y   RG     I+ F+LGY+P  R +     + KG+
Sbjct: 117 NEWACQFFQDQLYNTVDGRAIGMAYFRSRGFRDDIIKKFQLGYSPSQRDACAREAKAKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
            EE ++  GL    DN     DRF  R+IFP+ +  G+V+AFGGR L    KG +VKY N
Sbjct: 177 KEEFLLSTGLCYKRDNG-QLQDRFFGRVIFPVHTLSGKVVAFGGRVLDAATKGVNVKYQN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++ K K LY  F A   + K               LVEGY DV+S+ Q GV+NVV
Sbjct: 236 SPESAIYSKKKELYGLFLAKQSIVKQ----------DLCFLVEGYTDVISMHQMGVENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           SS GTALT  Q+R++ + +  I + +DGD  G++A+ + ID+    L  G  V  +LL  
Sbjct: 286 SSSGTALTTEQIRMIHRFTENITVLYDGDAAGIKASERGIDM---LLAEGMNVKLLLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T ++  + E              + +   P + + L   + + I+ I
Sbjct: 343 GDDPDSFARKHNATEYQAYLNEHQVDFIKYKTDLLLHEAQGDPIKLSRLISSIVHTISVI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR---------- 465
            D+  R  Y++     L    +  +   S      K+  + + +   +++          
Sbjct: 403 PDEITRSVYTRETATMLNMEERMLVAAISKEMAKAKEEKQKQRENERNRKHTQLPSSGQT 462

Query: 466 ------------------------------LMQSSLVKGKLSKKPSLREAA--------- 486
                                              +     S  P++ E A         
Sbjct: 463 LSSLDQDSLPPPSPFPPSEEGIPPIPDDGTPAAPPVPNTPPSNNPAITENASTLSYIPGK 522

Query: 487 -------------LLLTLINHPAILQEQYQE-------LADIRYDNNELQK--------- 517
                        L+  LI +   +    +        ++   + N  LQ+         
Sbjct: 523 GAEAMLFYRKELLLIQVLIRYGEKIICYAENEQGEEVPVSVAEFINYALQEDGLLFHNAL 582

Query: 518 ---LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIV 572
              +         E  +           +     L  +L  D+             AN  
Sbjct: 583 HKHILQEAIDHIHEDGFSSERYFLNH-PDNHISMLAFELSGDKYQLSKYHSKHQKIANDE 641

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +        L    +  ++  + ++I  ++ Q       E+   ++    E+   I +  
Sbjct: 642 ERLTELVPHLISDFKLAIVDEELKQILLKLRQPDILSRKEEYMEIMKHYKEMK-DIERTL 700

Query: 633 SQE 635
           ++E
Sbjct: 701 ARE 703


>gi|157829160|ref|YP_001495402.1| DNA primase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933889|ref|YP_001650678.1| DNA primase [Rickettsia rickettsii str. Iowa]
 gi|157801641|gb|ABV76894.1| DNA primase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908976|gb|ABY73272.1| DNA primase [Rickettsia rickettsii str. Iowa]
          Length = 595

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 172/633 (27%), Positives = 300/633 (47%), Gaps = 50/633 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    +F + L   I IS+++ Q V   R+      G+Y   CPFH EKTPSF  ++SK 
Sbjct: 1   MRVAPEFYEFLRNRINISDVVRQKVALTRK-----SGNYVGLCPFHQEKTPSFTVSNSKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F+YCF C   GD + F S + G S+ ES  +LA   G+ +P +  K ++  +   +++ +
Sbjct: 56  FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLAIDYGIEIPKLTAKQKEFYEESDEILNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L       + +YL ERGI    ++ F +G+AP +    +    +     
Sbjct: 116 LELANKFFRTQLT----PEILHYLHERGITEETVKEFSIGFAPKNNKFEKFFHDKNIDII 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +      +    +     Y+ F NR+  PIR+   +++ FGGR L +G   KYLNSPET 
Sbjct: 172 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETT 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY    A++   K           +  ILVEGY DV++L QAG    V+SLGT
Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSETVASLGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ++TE  L  LW+    I+LC DGD+ G++A+ + I+L L  +    +++F+ L  G DPD
Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPSGLDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +   G   F KLI + + L +M+W  E   +SF T +E+A LE +LKN  + I D  L
Sbjct: 339 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKSFKTAEEKANLEKNLKNYCSKISDSDL 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y +  +D++ Q                  N     +K  ++    + ++      + 
Sbjct: 399 KVSYYRFFKDQIWQ------------------NLVTTQKKATTKNSNLAPIISSHGYSEL 440

Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            + E A    L+  P IL+E      + ++ ++N  L++  ++  ++ ++       EI 
Sbjct: 441 EILEHAFCALLVKFPIILEEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNN-VEASEIT 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +  F ++   L +        S       +D+   +     L+K++ L++ Q+E  
Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISCNKNNIRLDLLWQW-----LHKKYYLINLQQEYA 554

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                  T   + EK  +    + ++  ++  +
Sbjct: 555 IT--INSTDNHDFEKVLLYKKEILKIANELQVL 585


>gi|120610094|ref|YP_969772.1| DNA primase [Acidovorax citrulli AAC00-1]
 gi|120588558|gb|ABM31998.1| DNA primase [Acidovorax citrulli AAC00-1]
          Length = 674

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 146/479 (30%), Positives = 231/479 (48%), Gaps = 26/479 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P+ FI++LL  + + +++G+YV   +   N     +   CPFH EK+PSF  + SK 
Sbjct: 1   MSIPQSFIQELLSRVDVVDVVGRYVQLKKGGAN-----FMGLCPFHGEKSPSFSVSPSKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------KIQ 114
           FY+CF C   G+ +SFL    G  F+E+VQ LA   G+ +P  D   +++E      + Q
Sbjct: 56  FYHCFGCGKNGNAISFLMEHAGMGFVEAVQDLAQQVGLQVPQDDVSPQERERAAAQRQKQ 115

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  ++E A + +   L+ +  +R   Y   RG+     + + LGYAP+   SL     
Sbjct: 116 ATLTDVLEKAGEAYRRHLRES--QRAIAYFKGRGVSGAVAKRYGLGYAPEGWRSLASVF- 172

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
              +    + E+GL+I  +     YDRFR+R++FPIR+ +G+ I FGGR L   +  KYL
Sbjct: 173 -PEYDNPLLHESGLVIVNEEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVL-GDDKPKYL 230

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET +FHKG+ LY  F A   ++             + ++ EGYMDV++L Q G  N 
Sbjct: 231 NSPETPVFHKGRELYGLFEARAAIR----------EHGYALVTEGYMDVVALAQLGFPNA 280

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V++LGTA T   +  L++ +  +V  FDGD  G RAA KA+D  L +      V F+ L 
Sbjct: 281 VATLGTACTPDHVHKLFRFTDTVVFSFDGDAAGRRAARKALDGALPYATDTRSVKFLFLP 340

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPDSF+R +G  AF + +  ++PL   L +   E       + RA +  + +     
Sbjct: 341 AEHDPDSFVRAHGTDAFARHVQGAMPLSRFLVEVVGEGCDLGLAEGRARMAANARPLWTA 400

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           + D  L+      + +  Q          +          +      P+          
Sbjct: 401 LPDGALKRQLLGELAELAQLAASDLSELWAAPAHPAGGGRQAAGGSAPTGAPAYDEAPP 459


>gi|256830225|ref|YP_003158953.1| DNA primase [Desulfomicrobium baculatum DSM 4028]
 gi|256579401|gb|ACU90537.1| DNA primase [Desulfomicrobium baculatum DSM 4028]
          Length = 567

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 160/624 (25%), Positives = 273/624 (43%), Gaps = 62/624 (9%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M+ + +  I  +   + I ++IG++V+              A CPFH E  PSF  N   
Sbjct: 1   MSTFDQGLIAQIKARLRIEDVIGRHVELRPAGN-----RLVAPCPFHQETKPSFSVNPEG 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
           GFYYCF C   GD + F  A+ G  F+E+V+ LA  AG+ +      +   E  ++  + 
Sbjct: 56  GFYYCFGCQASGDIIEFYRAINGLEFVEAVEALAREAGLEVRRRPEYMAPGEISRSQCLD 115

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  +A  F+   L  A  +    Y+  RG+ S  +E F LG+AP     LR+HLR +GF 
Sbjct: 116 MHALAAVFYREVLGRAPGQAARDYIARRGLASEIVERFCLGWAPAGWNELRDHLRGRGFP 175

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           E    +AGL+       + YDRFR RLIFPI +   Q +AFGGR+L  G+  KYLNS ET
Sbjct: 176 EAVAEKAGLVSKS-AKGSYYDRFRERLIFPIMNLSAQTVAFGGRSLVDGDGPKYLNSSET 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            ++ KG++LY  + A   +          + S  ++L EGY+DVLSL Q G +N    LG
Sbjct: 235 PIYTKGEHLYGLYQARRAM----------SHSKSVLLTEGYVDVLSLHQFGFENSCGVLG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALT  Q+  L  L  ++ L FDGD+ G +AA ++ ++    L  G +   +L+  GED 
Sbjct: 285 TALTPEQVHRLSGLVGQVDLVFDGDNAGRKAALRSAEM---ILTQGLKCRVLLMPEGEDV 341

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS ++  G+ +  +L  +++  +D   ++ + N+S         +       ++ +K   
Sbjct: 342 DSVLQKNGRESLLELSAQAVDGLDYCLRQLSANQSPKD------VLNWATGFMSRLKKLD 395

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            + YY   +   L     +        G     +A  R ++    +L ++          
Sbjct: 396 WKSYYLPKLAAGLGLSETELRRTLGEKGADATASAPARLEQCKPSQLDKN---------- 445

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  LL   +  P    + ++            +  WS +F          P E+  
Sbjct: 446 -------LLAFAVRFPEYHGQLHELGLGEALATERGRIFWSKIF-------GVSPHEVLS 491

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           R+ +      ++               T+  + D R  +   +  + R     R  E + 
Sbjct: 492 RMDQGEKQFYVQ-----------CQMRTDVTVDDGRSEW-DEVQDFLRQTGQRRDLESLN 539

Query: 600 KQIAQVTAKGEAEKTAILISILHE 623
             + +    G+ ++   L++++  
Sbjct: 540 SGLRKARQSGDFQEELRLLALIQA 563


>gi|238651105|ref|YP_002916963.1| DNA primase [Rickettsia peacockii str. Rustic]
 gi|238625203|gb|ACR47909.1| DNA primase [Rickettsia peacockii str. Rustic]
          Length = 595

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 172/633 (27%), Positives = 300/633 (47%), Gaps = 50/633 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    +F + L   I IS+++ Q V   R+      G+Y   CPFH EKTPSF  ++SK 
Sbjct: 1   MRVAPEFYEFLRNRINISDVVRQKVALTRK-----SGNYVGLCPFHQEKTPSFTVSNSKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F+YCF C   GD + F S + G S+ ES  +LA   G+ +P +  K ++  +   +++ +
Sbjct: 56  FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLAIDYGIEIPKLTAKQKEFYEESDEILNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L       + +YL ERGI    ++ F +G+AP +    +    +     
Sbjct: 116 LELANKFFRTQLT----PEILHYLHERGITEETLKEFSIGFAPKNNKFEKFFHDKNIDII 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +      +    +     Y+ F NR+  PIR+   +++ FGGR L +G   KYLNSPET 
Sbjct: 172 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETT 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY    A++   K           +  ILVEGY DV++L QAG    V+SLGT
Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSETVASLGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ++TE  L  LW+    I+LC DGD+ G++A+ + I+L L  +    +++F+ L  G DPD
Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPSGLDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +   G   F KLI + + L +M+W  E   +SF T +E+A LE +LKN  + I D  L
Sbjct: 339 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKSFKTAEEKANLEKNLKNYCSKISDSDL 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y +  +D++ Q                  N     +K  ++    + ++      + 
Sbjct: 399 KVSYYRFFKDQIWQ------------------NLVTTQKKATTKNSNLAPIISSHGYSEL 440

Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            + E A    L+  P IL+E      + ++ ++N  L++  ++  ++ ++       EI 
Sbjct: 441 EILEHAFCALLVKFPIILEEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNN-VEASEIT 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +  F ++   L +        S       +D+   +     L+K++ L++ Q+E  
Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNIRLDLLWQW-----LHKKYYLINLQQEYA 554

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                  T   + EK  +    + ++  ++  +
Sbjct: 555 IT--INSTDNHDFEKVLLYKKEILKIANELQVL 585


>gi|150008464|ref|YP_001303207.1| DNA primase [Parabacteroides distasonis ATCC 8503]
 gi|149936888|gb|ABR43585.1| DNA primase [Parabacteroides distasonis ATCC 8503]
          Length = 705

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 153/710 (21%), Positives = 272/710 (38%), Gaps = 106/710 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++ ++V   +R  N     Y   CPFH +K+PSF+ + SK   
Sbjct: 2   IDQPTIDRILDAANIVDVVSEFVTLRKRGIN-----YVGLCPFHSDKSPSFYVSPSKNIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CF+C   G  + F+      S+ ++++ LA    + +   +   ++K+    +  ++ +
Sbjct: 57  KCFACGEGGTAVHFIMKHEQLSYFDALRFLAKKYNIEIQERELTEKEKQIRSDRESMLIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A  +F   L    + +     Y  ERG+    I  F+LGY+ D R +L +   + G+
Sbjct: 117 NSWAGQYFSTLLHEHVEGKSVGMRYFAERGLREDIIRKFQLGYSLDQRDALYKTAIKAGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
            +E + + GL+I   ++    DRFR R+IFP+ +  G+V+AFGGR L K E   KY+NSP
Sbjct: 177 KKEFLEKTGLVI-AYDNGNVNDRFRGRVIFPVHTLSGKVVAFGGRVLKKDEKTAKYVNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK   LY  + A   + K  R            LVEGYMDV+ + Q GV+NVV+S
Sbjct: 236 ESEIYHKSNELYGIYFAKQAIMKQDR----------CFLVEGYMDVIGMHQVGVENVVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT+ Q+RL+ + +  I + +DGD  G++AA + ID+    L  G  V  VLL  GE
Sbjct: 286 SGTALTQGQIRLIHRFTNNITVLYDGDAAGIKAALRGIDM---LLEEGMNVKVVLLPAGE 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R +  + F + I ++         +     +   P +R+ L   +   +  I D
Sbjct: 343 DPDSFARSHSASEFAEFISQNETDFIRFKTKLLLAEAGGDPIKRSALISDIIRTVAIIPD 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHS--------GYGRYWKKNARHRDQKGPSQR---- 465
              R  Y +     ++   Q  + E +               +N         +      
Sbjct: 403 NIARSVYIRECSTTMEIDEQVLLNEVNKIRLNKEENQAAKSVRNTPPVQSPVNTIPEYPD 462

Query: 466 --------------------------------------------LMQSSLVKGKLSKKPS 481
                                                           ++          
Sbjct: 463 FPGYQPYTPEEANTLPPENIPPPPPEDYIPEEEAGPPPTPPYEVPTAPNIQVQPKRSPFE 522

Query: 482 LREAALLLTLINHPA--ILQEQYQE------------------LADIRYDNNELQKLWSF 521
             E ALL  ++ +    +     +E                    D+ +     +++   
Sbjct: 523 AYELALLRYIVRYGERVLYDYVDEETNEHVIMRVADYIRFDLERDDLTFYTPTFKQMLDE 582

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQ 579
                  + +           +     L   L  D+                 D      
Sbjct: 583 AAEHCQNEGFMATRYFLAH-PDPNISRLAANLISDKYQLSKYHTKFRELEQEEDKLDYLV 641

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI---SILHEVHI 626
                  +   +  + ++I+ +I +   KG+ E    L+   + L+E+  
Sbjct: 642 PREIYSMKDAYILYKIKDIQAKIKEAQNKGDMELIFDLMKQNAHLNEIKN 691


>gi|210633988|ref|ZP_03297937.1| hypothetical protein COLSTE_01855 [Collinsella stercoris DSM 13279]
 gi|210158986|gb|EEA89957.1| hypothetical protein COLSTE_01855 [Collinsella stercoris DSM 13279]
          Length = 465

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 144/450 (32%), Positives = 227/450 (50%), Gaps = 21/450 (4%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              +    +     +  L+ + V+   R       D W CCPFH EKTPSFH   +   +
Sbjct: 2   ISDEDKNKVRDATDLVALVQETVELKPRGN----TDLWGCCPFHGEKTPSFHVIPATQVW 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD  +++    G SF ES++ LA  AG+ L   D   ++    +  LI + E
Sbjct: 58  HCFGCGEGGDAFTYVMKREGLSFPESIRYLADRAGIELEE-DRSFKRSGTKRNRLIEVCE 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
             ++F+H  L   +D R   Y   R +D+     ++LG+AP     L  HL  KGF+ ++
Sbjct: 117 ETSEFYHTLLMRGKDARGREYCKGRELDADTCRKYRLGFAP-GHGMLVRHLGSKGFTPQE 175

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETIL 241
           +I+A +     N     DRF +R++FPI   +G+ IAFGGR L K ++  KYLNS ET +
Sbjct: 176 MIDANVAFRSRNG-GLVDRFFDRVMFPIMDEQGRCIAFGGRALDKEKTNAKYLNSSETPI 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           FHKGKNLY F  A +++           + + +I+VEGY+  +S  +AG++N+V+ LGTA
Sbjct: 235 FHKGKNLYGFNWAKDHI----------VARNEVIVVEGYISAMSCWKAGIENIVAVLGTA 284

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE  ++ L + + +I+  FDGD  G +AA +AI            +  V+L  G+DPD 
Sbjct: 285 LTEAHVKTLTRFTKKIIYMFDGDAAGQKAARRAIQ---FIEKDDIDLRCVILPDGQDPDD 341

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           F+R  G     +L+  S+PL+D ++ +  E    +TP  RA+        I  ++   + 
Sbjct: 342 FVRANGGDKLRELLDNSIPLMDFVFGKLEEESDISTPGGRAKAMKSALELIYPLRASYMI 401

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
             Y   I DRL    +   +      R  +
Sbjct: 402 DGYYMQIADRLGLDVEMIRSNAGKVFREVQ 431


>gi|225868706|ref|YP_002744654.1| DNA primase [Streptococcus equi subsp. zooepidemicus]
 gi|225701982|emb|CAW99543.1| DNA primase [Streptococcus equi subsp. zooepidemicus]
          Length = 609

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 159/635 (25%), Positives = 276/635 (43%), Gaps = 49/635 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +  ++ I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 17  AIDKEMISQIKHNVNIVDVIGEVVHLSRAGR-----HYLGLCPFHKEKTPSFNVIEDRQF 71

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIR 119
           ++CF C   GD   F+       F+ESVQ +A  AG+ + V   +    +K+     LI 
Sbjct: 72  FHCFGCGKSGDVFKFIEEYRQVPFLESVQIVADKAGMAVTVAPSQTSLSQKQHPHQALID 131

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L E A  F+H  L      +R   YL +RG+D   IE F++G AP+    L + L +K +
Sbjct: 132 LHEDAAKFYHAVLMTTKIGQRAKEYLYQRGLDDQLIEHFRIGLAPNEMDYLYQALSKK-Y 190

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234
           +E ++  +GL    + S   YD FR+R++FP+   +G +IAF GR  ++ +      KY 
Sbjct: 191 TEAQLTASGLFHVSEQSNAIYDAFRHRIMFPLCDDKGNIIAFSGRIWAREDIEKQQAKYK 250

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS  T+LF+K   LY+   A   + K          +  + L+EG+MDV++  +AG  N 
Sbjct: 251 NSRATVLFNKSYELYHLDKAKPIIAK----------THEVFLMEGFMDVIAAYRAGYGNT 300

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +R L +L+ ++VL +DGDD G  A  K+++L+    +       V + 
Sbjct: 301 VASMGTALTPEHVRHLKQLTQKVVLTYDGDDAGQNAIAKSLELLADFQVE-----IVKIP 355

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD F++ +   A  KL+  S            +  + +    +     H+   I  
Sbjct: 356 NRMDPDEFVQQHSPEALAKLLQHSRISSVEFLIDHLKPENMDNLQSQIAYVEHISQIIAQ 415

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                 +  Y   + D L       + +     R   + +           L+  +L   
Sbjct: 416 APSITAQNSYINKVADLLPDFDYFQVEQSVNALRLQDRQSLQGQTSQSKASLV--TLPIN 473

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K     +  E+ LL  L++H  +L E      D  +D   LQ L+  L +          
Sbjct: 474 KSITALAKTESHLLHRLLHHDYLLNEFRHR-PDFYFDTPALQTLYEQLKA---------- 522

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                ++      +L +++++        +   E    ++     + + L K+ R L RQ
Sbjct: 523 ---TGQITSYDLSQLSEEVNQAYYRVLEENLPDEIASGEIEDILSRQMTLLKQ-RELHRQ 578

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                KQI + ++KG+ +     +        ++ 
Sbjct: 579 ----GKQIRESSSKGDHQMALEALERFIAEKRKME 609


>gi|323142715|ref|ZP_08077432.1| DNA primase [Succinatimonas hippei YIT 12066]
 gi|322417510|gb|EFY08127.1| DNA primase [Succinatimonas hippei YIT 12066]
          Length = 607

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 149/630 (23%), Positives = 269/630 (42%), Gaps = 40/630 (6%)

Query: 2   NYPRDFI-KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
               +FI   L+  + I   IGQYV   R+ +N    +Y  CCPFH EKTPSF    SK 
Sbjct: 3   RIAVNFIRDRLIPAVNIEAFIGQYVTLKRQSSN----NYTCCCPFHHEKTPSFVVTPSKQ 58

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIR 119
            +YCF C   G+ + F+      SF+E+V+ +A  AG+ +         +K         
Sbjct: 59  MFYCFGCKEHGNAIDFVMKFKNLSFVEAVEEVAQFAGLNVEYEQGSGGFEKADTYKLYYE 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++    +F   L ++ + +  Y++ +R +    I   +LGYAPDS   +    +     
Sbjct: 119 LMDRCASYFVKCLSSSPEGKD-YFIKKRELSEDTIIKARLGYAPDSWDYIHNIAKNTDEY 177

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           ++ I    L +  D    SY  FR R++ PI   RG+VI+FGGRTL      KYLN+ E+
Sbjct: 178 KKLIE---LGMVVDKGDRSYAMFRGRVMIPIIDGRGRVISFGGRTL-GDAKPKYLNTAES 233

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K   L+  +  L   +         N  + I++VEGYMDV++L Q G    V+SLG
Sbjct: 234 PIFRKRHELFGLYETLQANR---------NRPARIVIVEGYMDVIALRQFGCSFAVASLG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T+ Q+ L+++ + ++V C+DGD  G  AA+ A++     L     + F  L    DP
Sbjct: 285 TATTKEQMELMFRYTKQVVCCYDGDFAGRNAAWHALETATAVLKADREIRFAFLPPEHDP 344

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS +R  G +AF + +  S+   + L K  ++    + P +++     +   I  I +  
Sbjct: 345 DSLVRAEGLSAFTRTLDASVSYPEFLIKHISDKYDLSDPGQKSPFLNEVLYFIRRIPEMT 404

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           L+      +  +   L +  + E     +   ++ +  +++         S+ K      
Sbjct: 405 LQAVCVSELARK-AGLEEDLLYEMLKSVKLNSRDEKEWEKEA-------GSMKKEGTVNL 456

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDN-------NELQKLWSFLFSDFVEQKYF 532
            +     L+  ++  P ++   Y+     +  +            L S   +   E+   
Sbjct: 457 LTTPMRRLIAFILQQPTLVSTVYERFNLDKLQHLCKDAAIKGNVDL-SLFLNLIKEKPDI 515

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
            P    + +      + ++ L  +       +  +E +   VR      L        L 
Sbjct: 516 TPAGFIETVRGSVREKYVRNLI-EAEFIPKKADGSEFSPE-VRADLFSKLIKETLGMPLK 573

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILH 622
           ++ E +  ++   +   E  +   L++ + 
Sbjct: 574 QEIERL--RLRGDSITKEEMEAMSLLNRML 601


>gi|86148898|ref|ZP_01067144.1| DNA primase [Vibrio sp. MED222]
 gi|85833316|gb|EAQ51528.1| DNA primase [Vibrio sp. MED222]
          Length = 339

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/349 (35%), Positives = 195/349 (55%), Gaps = 23/349 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I +++   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDIVDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQTD 116
           +CF C V G+ + F+       F+E+++ LA+  G+ +P      E         + + +
Sbjct: 60  HCFGCGVHGNAIDFIMEFERLDFVEAIEELASFLGLDVPREQRSGEISTAPRANSEQKRN 119

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  L+   ++F+   LK + +K    YL  RG+    ++ F +GY  D    +R++  Q+
Sbjct: 120 LYDLMGGISNFYRSQLKISANKPAIDYLKNRGLSGEIVQKFGIGYVADEWDLVRKNFGQQ 179

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
             +++ ++  G+LI+ D     YDRFR R++FPIR  RG+VI FGGR L +  + KYLNS
Sbjct: 180 KEAQDMLVTGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-EDGTPKYLNS 237

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +FHKGK LY  +  L   +              I++VEGYMDV++L Q GV   V+
Sbjct: 238 PETPIFHKGKELYGLYEVLQAYR----------EPPQILVVEGYMDVVALAQYGVDYSVA 287

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           SLGT+ T   +++L++ +  +V C+DGD  G  AA++A++  L +L  G
Sbjct: 288 SLGTSTTGDHVQMLFRQTSTVVCCYDGDRAGKEAAWRALENALEYLKTG 336


>gi|149175262|ref|ZP_01853884.1| DNA primase [Planctomyces maris DSM 8797]
 gi|148845871|gb|EDL60212.1| DNA primase [Planctomyces maris DSM 8797]
          Length = 636

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 131/646 (20%), Positives = 257/646 (39%), Gaps = 38/646 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           + ++F + +     +  L+ + V            D+   CPFH++  PS      +  +
Sbjct: 5   FDQNFKELVRQRTSLVELVSESVQLIPNGR-----DFKCLCPFHNDHNPSLVVYPDRETW 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEK--IQTDLI 118
            C+ C+  GD   ++       F E+++ LA  A + +P          +     +T L 
Sbjct: 60  RCWVCNTGGDCFEWVQKYDDVEFFEALKILAERAHLEMPQLARQSNGAPRSNIVEKTSLF 119

Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            +++ A   FH  L N R+  +   Y +++RG     I+ F+LG+ P+    L    R  
Sbjct: 120 DVMKWAEQQFHDCLMNTREGEMARRYLMEDRGYTEETIQQFRLGFHPNDWQWLVNRSRGH 179

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV---KY 233
            + E  + EA L+   +  +   D F NR++FP+R  R +V+AFGGR L    +    KY
Sbjct: 180 -YPESLLSEARLIFKKEGHSRYSDYFVNRVMFPVRDERKRVVAFGGRILPGSAAEGIAKY 238

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            NSPE+I+F K K L+    +   ++           +  +++VEGY D ++  Q GV N
Sbjct: 239 FNSPESIIFTKSKLLFGLDESRQTIR----------ETETVVVVEGYTDCITAHQFGVTN 288

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V++LGTALTE  +  L +L+ ++VL FDGD  G +AA +++      +     +  + L
Sbjct: 289 AVATLGTALTETHVSYLKRLARKVVLVFDGDTAGQQAAERSL---TKFIAQEVDLRILTL 345

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G+DP  F+   G    ++LI ++    +       +     + D +  +   +   + 
Sbjct: 346 PAGKDPAEFLEEQGAEQLKQLIADAPEAWNFKLNVCVQKFGLESIDGQHRILEEMLELLA 405

Query: 414 HIKD---QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN-----ARHRDQKGPSQR 465
              +   +       + + DRL           S   +    +     +       P   
Sbjct: 406 SSPNLTGKIREDIILRKLADRLGLNESVVRKRLSEVKQKKSPSLNTNLSSSESYSTPRPT 465

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
               +  +   S K +  E+ LL  +  +P  +    Q ++     N +L+ L+      
Sbjct: 466 DTSGNFQEADNSTKDNQLESELLEIIFVYPECVTRIQQLISPENLKNPQLRFLYQLCVDL 525

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALA 583
             E        I  R+ +    +L+ ++D   R+  + +   +  A +  +    + ++ 
Sbjct: 526 TEEGLVLDINRILDRIADPDLKQLVVKIDAHAREKAVHAKLLDDPAPLEGIPHFLKHSIK 585

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             K        ++           +        L+    E H + +
Sbjct: 586 NLKWREEREHHEKTKGLLFQNAQNQSLNSDAKELLRKASEFHQKRN 631


>gi|261855082|ref|YP_003262365.1| DNA primase [Halothiobacillus neapolitanus c2]
 gi|261835551|gb|ACX95318.1| DNA primase [Halothiobacillus neapolitanus c2]
          Length = 559

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 178/596 (29%), Positives = 269/596 (45%), Gaps = 53/596 (8%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M+  P  FI D+L    +  LI   V   ++       +Y ACCPFH EKTPSF+ N  K
Sbjct: 4   MSFIPESFIDDVLARTDLVELIHAQVPLKKKGK-----EYAACCPFHQEKTPSFYVNPDK 58

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
            FY+CF C   G+ +SFL       F  +++ LA  AG+ LP V     K  + Q  ++ 
Sbjct: 59  QFYHCFGCGAHGNAVSFLMDYEHRDFRGAIEELATRAGMTLP-VSEVDHKALEEQAAMLD 117

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            +  A   F   L+    +    YL +RG++     +F LG+AP+    L  H       
Sbjct: 118 SMSFANAHFKRQLRAH--QEAIDYLKQRGVNGTTAALFDLGFAPNG-NLLLGHCESPPKM 174

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            ++++E GL I   +    YDRFR R++FPIR  RGQ+I FGGR L  GE  KYLNSPE+
Sbjct: 175 RDELLELGL-IVQKDDGEQYDRFRRRIMFPIRDKRGQIIGFGGRILGPGEP-KYLNSPES 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LFHKG+NLY  + A     +  R          +I+VEGYMDV+ L Q GV+NVV+++G
Sbjct: 233 RLFHKGQNLYGLYEARLDDARPAR----------VIIVEGYMDVVMLAQHGVRNVVATMG 282

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T+ Q + L++ SP +V CFDGD  G RAA KA+   L HL  G  + F+ L  GEDP
Sbjct: 283 TATTDEQTQSLYRFSPSLVFCFDGDAAGRRAATKALHAALPHLTDGRDLRFLFLPDGEDP 342

Query: 360 DSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           DSFI+  GK+AF E++   SL   + + +   +          A+      + I  + D 
Sbjct: 343 DSFIQAKGKSAFIEQIEHHSLSFDNFILQLLDQMEPGQDTAAMAKKSKLGNDWIRTLPDG 402

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L+    + I +                          R     +    + +L + K   
Sbjct: 403 ALKRITQRRINEHTGV---------------------WRAAYKKNTGPTEPTLPRNKPQS 441

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVE------QKY 531
               ++  +L  ++ HP +LQ   +  A       E  Q L +   + + +         
Sbjct: 442 --YAKQTLILSIVLKHPDLLQRVLEPQAWFNSRVPEGFQLLATQPRARWAQSASELWGAE 499

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                +          E  + +          S +  A+    RQ   + +A  ++
Sbjct: 500 ETKTALAIEFQGIERAETAQNILEDTLIQLHRSESDSASKQASRQALARFMAEQEK 555


>gi|123966255|ref|YP_001011336.1| DNA primase [Prochlorococcus marinus str. MIT 9515]
 gi|123200621|gb|ABM72229.1| CHC2 zinc finger:Toprim domain [Prochlorococcus marinus str. MIT
           9515]
          Length = 678

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 153/628 (24%), Positives = 278/628 (44%), Gaps = 53/628 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           +     I+++     I ++I +++   ++       ++   CPFHD+  PS   + +K F
Sbjct: 4   SIHPRTIQEVKDKADIVDVISEHIVLKKKGK-----EFVGICPFHDDNKPSMTVSPAKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117
           YYCFSC   G+ + FL      +F + V  LA    + +  VD   ++  K     + +L
Sbjct: 59  YYCFSCGAGGNSIKFLMEFTRNNFTDVVLSLAKKNDINVINVDGPQQEVYKKQLSRREEL 118

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            +++ V  D+F   L N+  K    Y   +R ++   I  F+LG+AP+S   L  +L + 
Sbjct: 119 YKILRVTKDWFVSQLNNSLGKEALNYLTSQRNLNIKNINDFQLGFAPNSWNDLFNYLSKV 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           + F  + I+ AGL++  +NS   YDRFRNRLI PI   +G+V+AFGGR+L  G+  KYLN
Sbjct: 179 EKFPLKLILSAGLVVSKENSDKVYDRFRNRLIVPIFDMQGRVVAFGGRSL-DGQEPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ +F KGK L+ F  A + ++KS +           ++VEGY DV+SL   G+ N V
Sbjct: 238 SPESEVFEKGKMLFAFDKASSNIRKSDKA----------VVVEGYFDVISLHAKGITNSV 287

Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352
           +SLGTAL +YQ+  L + +    I++ FD D+ G+ A  + I+ V    +        + 
Sbjct: 288 ASLGTALNKYQISQLCRCTDSKNIIINFDSDNAGILATKRVINEVEILSLHDQINLKILQ 347

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           +   +DPD +++      +  LI  +   +D    +  EN+  +  D    +   L   +
Sbjct: 348 IKSFKDPDEYLKRNTPEDYINLIDNASFWIDWEIDQIFENKDLSKSDIFQNVISSLVKLL 407

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           + +     R +Y Q + +RL     +   +     R   K  R   +    ++       
Sbjct: 408 SKLPQSATRTHYLQKVSERLSMGQARLAIKFEEDLRKQVKGFRWHGRSKKFEQP------ 461

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFL------- 522
                 +    E+ ++   I+ P       +EL      +++   ++ +W  +       
Sbjct: 462 --NEISQREKNESEIIYYYIHCPEYRLFIREELLKREIEKFNTEYIRLIWDSISTIEGNN 519

Query: 523 --FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV------ 574
              +   + +    ++++          LL           L    T  N  ++      
Sbjct: 520 FGSNYLDDLRNSNNQKLNNDFISLNLISLLPDHLALNNLEVLNKINTFINPDELFLTTLK 579

Query: 575 --RQGYQQALALYKRFRLLSRQKEEIEK 600
             +      L+L +R++ L R +  IE 
Sbjct: 580 NPKHNLLGTLSLLERYKSLKRCRHLIES 607


>gi|116328272|ref|YP_797992.1| DNA primase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330996|ref|YP_800714.1| DNA primase [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116121016|gb|ABJ79059.1| DNA primase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124685|gb|ABJ75956.1| DNA primase [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 598

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 160/643 (24%), Positives = 282/643 (43%), Gaps = 54/643 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+  +DFI  +   +PI + I ++V   +R  N     +   CPFH EK+PSF+ +  K 
Sbjct: 1   MSNKKDFIDRIHREVPIESYISRFVPLKKRGKN-----FLGLCPFHQEKSPSFNVSAEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF C   GD + F+       F  S++ L+  +G+PL   + K  +       L ++
Sbjct: 56  FYYCFGCKASGDLIRFVMDYERVDFSRSLEILSEYSGIPLQEKNSKNAEISDF---LYKI 112

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS-LREHLRQKGFS 179
            +  ++++ H L     K    YL  R I+   I +F LGYAP+   + ++E L+ K   
Sbjct: 113 NQKVSEYYQHLLHTPIGKNAFDYLKSREIEDSEIRIFGLGYAPEGFETLMKEVLKTKDEI 172

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              I    L      +   YD FR+R++FP+    G+ IAF GR L  G+  KY+NSP +
Sbjct: 173 AGAIQLGLLREKEAGNGRPYDFFRDRIMFPVLDLSGRTIAFSGRILGPGKEAKYINSPAS 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           I+F K +  YNFF A   ++K          +   ILVEGY+DV+ L +   +NV++S+G
Sbjct: 233 IIFDKSRTFYNFFRAREGVRK----------TGEAILVEGYLDVIGLVRRDYENVIASMG 282

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA+TE  +R L K + RI    DGD  G + A +A ++ L     G   + VLL  G+DP
Sbjct: 283 TAITENHIRTLKKFAERITFVLDGDIAGKKGALRAAEICL---KEGMECSIVLLPEGKDP 339

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT-PDERAELEIHLKNCINHIKDQ 418
               +   +    KL+ E +   + +     E+      P+ + +   +L +    +  +
Sbjct: 340 FDLAKSLSRPQLNKLLSEQIQGSEFVIGELLESADSRALPERKRKALQNLYSFTQTLNRE 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             + ++     ++L       + +  G             + GP    + S L + +   
Sbjct: 400 TDKQFFLGLGANKLGISMDAVLRDFKGG---------TSAKNGPVNADISSKLKEVQEIS 450

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            P+L  E  ++  L+ H  +     +E++ + + +     LW +L++ +  +    P +I
Sbjct: 451 APALDCERKIISMLVKHTGLFS-YAEEISSMEFMDVTSSYLWDYLYTVYTGEGEISPVQI 509

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                     ++L     +  +        +                  R  LL ++K  
Sbjct: 510 LASELPEDLKQILAPYLLEEYEKEEPEELHKV----------------FRLLLLQQKKFR 553

Query: 598 IEKQIAQVTAKGEAEKTAILISIL----HEVHIQIHQIESQEA 636
           IE++I ++  K E   T  + + L     E    +  I +Q A
Sbjct: 554 IEERIRELDQKRERFFTPEIFTELSFYRKEKEKILEHIRNQSA 596


>gi|296120486|ref|YP_003628264.1| DNA primase [Planctomyces limnophilus DSM 3776]
 gi|296012826|gb|ADG66065.1| DNA primase [Planctomyces limnophilus DSM 3776]
          Length = 677

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 139/589 (23%), Positives = 230/589 (39%), Gaps = 41/589 (6%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            +  + +     I  LIG+ V             +   CPFHD+  PS   N  +  Y C
Sbjct: 12  DEIKEQVRARTDIVQLIGETVSLQPA---RGGRTFQCLCPFHDDHNPSMQVNPERQTYRC 68

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EKKEKIQTDLIRL 120
           + C+  GD  S++      SF E++  LA  AG+ LP          E     ++DL  +
Sbjct: 69  WVCNEGGDCFSYVMKHDNLSFPEALTLLAEKAGIELPRRSRNEAGFGESSGPKKSDLFDV 128

Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  A+  F   LK++        YL  R +    +E F LGY PD  + L+E  R +   
Sbjct: 129 LVWASREFQQCLKSSALGAPAREYLASRQLKPEIVEQFALGYHPDDWHWLQERARGRFSV 188

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235
           +   +   L+   DN    YD F +RL+FPI   R + +AFGGR +     K ++ KY N
Sbjct: 189 DSLAVV-RLVGARDNGPGHYDFFVDRLLFPICDERSRPVAFGGRIIPGRPAKEDAPKYWN 247

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ LF K +  Y    A   +++          +  +++ EGYMD +   Q G++N V
Sbjct: 248 SPESPLFSKSRLCYGLDQAREAIRR----------TETVVVTEGYMDCIKAHQHGLKNAV 297

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++LGTALTE  +++L +L+ + VL +DGD  GL AA +++      L     +  + L  
Sbjct: 298 ATLGTALTENHVQVLKRLARKFVLIYDGDTAGLNAAERSL---PRFLAQDVDLRILTLPE 354

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN---CI 412
           G DPD F+   G  A E+ I E+   ++   +R  E     + D R  +   L       
Sbjct: 355 GLDPDEFLEAKGLAALEQAIQEAPEALEFKLRRSIERFGTGSVDARQRVTDELLETMALS 414

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +            +  RL  L +  + +     R  ++                S + 
Sbjct: 415 PGLAGSVRERNLLSRLTSRLG-LSESLLQKRLRDLRVEQRFKNVSQPPRKVDPAESSIID 473

Query: 473 KGKLSKKP-----------SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
             +  ++             L E+     L+  P       Q +    + +   + LW  
Sbjct: 474 DERPLQEQVNSLQRSTAGDDLLESEFFRLLLQSPDDFLWVSQRVGSDDFHHPAFRHLWCV 533

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
                        E +  +        LL  L      A    +  E+ 
Sbjct: 534 CLDVVEHGLLPSFELLLAQTESPALKGLLAWLGESHLSAAELLSLQESA 582


>gi|262383311|ref|ZP_06076447.1| DNA primase [Bacteroides sp. 2_1_33B]
 gi|262294209|gb|EEY82141.1| DNA primase [Bacteroides sp. 2_1_33B]
          Length = 705

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 153/710 (21%), Positives = 273/710 (38%), Gaps = 106/710 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++ ++V   +R  N     Y   CPFH +K+PSF+ + SK   
Sbjct: 2   IDQPTIDRILDAANIVDVVSEFVTLRKRGIN-----YVGLCPFHSDKSPSFYVSPSKNIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CF+C   G  + F+      S+ ++++ LA    + +   +   ++K+    +  ++ +
Sbjct: 57  KCFACGEGGTAVHFIMKHEQLSYFDALRFLAKKYNIEIQERELTEKEKQIRSDRESMLIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A  +F   L    + +     Y  ERG+    I  F+LGY+ D R +L +   + G+
Sbjct: 117 NSWAGQYFSTLLHEHVEGKSVGMRYFAERGLREDIIRKFQLGYSLDQRDALYKTAIKAGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
            +E + + GL+I   ++    DRFR R+IFP+ +  G+V+AFGGR L K E   KY+NSP
Sbjct: 177 KKEFLEKTGLVI-TYDNGNVNDRFRGRVIFPVHTLSGKVVAFGGRVLKKDEKTAKYVNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK   LY  + A   + K  R            LVEGYMDV+ + Q GV+NVV+S
Sbjct: 236 ESEIYHKSNELYGIYFAKQAIMKQDR----------CFLVEGYMDVIGMHQVGVENVVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT+ Q+RL+ + +  I + +DGD  G++AA + ID+    L  G  V  VLL  GE
Sbjct: 286 SGTALTQGQIRLIHRFTNNITVLYDGDAAGIKAALRGIDM---LLEEGMNVKVVLLPAGE 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R +  + F + I ++         +     +   P +R+ L   +   +  I D
Sbjct: 343 DPDSFARSHSASEFAEFISQNETDFIRFKTKLLLAEAGGDPIKRSALISDIIRTVAIIPD 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHS--------GYGRYWKKNARHRDQKGPSQR---- 465
              R  Y +     ++   Q  + E +               +N         +      
Sbjct: 403 NIARSVYIRECSTTMEIDEQVLLNEVNKIRLNKEENQAAKSVRNTPSVQSPVNTIPEYPD 462

Query: 466 --------------------------------------------LMQSSLVKGKLSKKPS 481
                                                           ++          
Sbjct: 463 FPGYQPYTQEEANTLPPENIPPPPPEDYIPEEEAGPPPTPPYEVPTAPNIQVQPKRSPFE 522

Query: 482 LREAALLLTLINHPA--ILQEQYQE------------------LADIRYDNNELQKLWSF 521
             E ALL  ++ +    +     +E                    D+ +     +++   
Sbjct: 523 AYELALLRYIVRYGERVLYDYVDEETNEHVIMRVADYIRFDLERDDLTFYTPAFKQMLDE 582

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQ 579
                  + +           +     L   L  D+                 D      
Sbjct: 583 AAEHCQNEGFMASRYFLAH-PDPNISRLAANLISDKYQLSKYHTKFRELEQEEDKLDYLV 641

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI---SILHEVHI 626
                  +   +  + ++I+ +I +   KG+ E+   L+   + L+E+  
Sbjct: 642 PREIYSMKDAYILYKIKDIQAKIKEAQNKGDMEQIFDLMKQNAHLNEIKN 691


>gi|325473906|gb|EGC77094.1| DNA primase [Treponema denticola F0402]
          Length = 595

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 158/638 (24%), Positives = 273/638 (42%), Gaps = 55/638 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 +  +     I +L+  Y   ++R  N     +W CCPFH+EKTPSF+    K  
Sbjct: 3   KISSKTVDAVTEMTDIVSLVENYTRLEKRGAN-----WWGCCPFHNEKTPSFNVVPDKKM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119
           YYCF CH  G  ++FL  +   SF+E+V+RLA  AG+ +          E  KI+  ++ 
Sbjct: 58  YYCFGCHKGGGTINFLMEMEKLSFMEAVERLAKNAGIEVIYEGGSYVPDEGAKIKDQILD 117

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L +     FH  L +N   K+   YL  R +    IE F LGY+P  R  L   L  K +
Sbjct: 118 LYDKVAGSFHFLLTQNPTGKKALDYLLSRNVSPEIIEKFNLGYSPKDRKWLHSFLLSKNY 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S++ + + GL      +   +    +RL+FPI    G+ IAFGGR L      KYLNS +
Sbjct: 178 SQDFLEKTGLFSKNYKNIAFFS---DRLMFPICDRHGKTIAFGGRILEGD-GAKYLNSSD 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
              + KG+ ++ F  AL  ++KS            +IL EGYMDVL+  QAG++N V+ L
Sbjct: 234 MPQYKKGETVFAFHHALAEIRKS----------KSVILCEGYMDVLAFFQAGIENAVAPL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE Q++LL   +    L FD D  G  A+YKAI +       G  V  + +  G+D
Sbjct: 284 GTALTEDQVKLLKSFAETFYLAFDSDKAGQEASYKAIKICRSM---GVNVRVLYMKDGKD 340

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   ++  GK   + L+  ++   D L +  +     ++P+ +A     L   I  ++  
Sbjct: 341 PSEILQKKGKEGLKFLLECAIVDDDYLIQIASMRFDISSPEGKASAIAFLFPYIEVLESD 400

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R      +        Q   +++    +   ++                  VK K   
Sbjct: 401 IQRESAISKLSSAFGVSQQAIFSDYVNREKKALRHIVD--------------EVKQKPVD 446

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E  L+L +  +  +      +L+   +++   + L+  L   + +   +    + 
Sbjct: 447 IRMNAELRLVLAVTANTDLFSRLRSQLSPDDFEDFYARHLFIVLEECYRDG-AYTYANLM 505

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R  E    E++ Q              ++    +  +        + +  +L +QK++I
Sbjct: 506 HRCGEEKLKEIVSQ------------TISKGEFAENSEKIVDDGINFIKQNVLQKQKDKI 553

Query: 599 EKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIES 633
             ++  +  +   +    T  L+     + IQ+++++ 
Sbjct: 554 IGRLRLLHGEKNIDTVNLTKELMEEKKSIDIQLNKLKG 591


>gi|42526853|ref|NP_971951.1| DNA primase [Treponema denticola ATCC 35405]
 gi|41817168|gb|AAS11862.1| DNA primase [Treponema denticola ATCC 35405]
          Length = 595

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 158/638 (24%), Positives = 272/638 (42%), Gaps = 55/638 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 +  +     I +L+  Y   ++R  N     +W CCPFH+EKTPSF+    K  
Sbjct: 3   KISSKTVDAVTEMTDIVSLVENYTRLEKRGAN-----WWGCCPFHNEKTPSFNVVPDKKM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119
           YYCF CH  G  ++FL  +   SF+E+V+RLA  AG+ +          E  KI+  ++ 
Sbjct: 58  YYCFGCHKGGGTINFLMEMEKLSFMEAVERLAKNAGIEVIYEGGSYVPDEGAKIKDQILD 117

Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L +     FH  L +N   K+   YL  R +    IE F LGY+P  R  L   L  K +
Sbjct: 118 LYDKVAGSFHFLLTQNPTGKKALDYLLSRNVSPEIIEKFNLGYSPKDRKWLHSFLLSKNY 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S++ + + GL          +    +RL+FPI    G+ IAFGGR L      KYLNS +
Sbjct: 178 SQDFLEKTGLFSKNYKKMAFFS---DRLMFPICDRHGKTIAFGGRILEGD-GAKYLNSSD 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
              + KG+ ++ F  AL  ++KS            +IL EGYMDVL+  QAG++N V+ L
Sbjct: 234 MPQYKKGETVFAFHHALAEIRKS----------KSVILCEGYMDVLAFFQAGIENAVAPL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE Q++LL   +    L FD D  G  A+YKAI +       G  V  + +  G+D
Sbjct: 284 GTALTEDQVKLLKSFAETFYLAFDSDKAGQEASYKAIKICRSM---GVNVRVLYIKDGKD 340

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   ++  GK   + L+  ++   D L +  +     ++P+ +A     L   I  ++  
Sbjct: 341 PSEILQKKGKEGLKFLLECAIVDDDYLIQIASMRFDISSPEGKASAIAFLFPYIEVLESD 400

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R      +        Q   +++    +   ++                  VK K   
Sbjct: 401 IQRESAISKLSSAFGVSQQAIFSDYVNREKKALRHIVD--------------EVKQKPVD 446

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E  L+L +  +  +      +L+   +++   + L+  L   + +   +    + 
Sbjct: 447 IRMNAELRLVLAVTANTDLFSRLRSQLSPDDFEDFYARHLFIVLEECYRDG-AYTYANLM 505

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R  E    E++ Q              ++    +  +        + +  +L +QK++I
Sbjct: 506 HRCGEEKLKEIVSQ------------TISKGEFAENSEKIVDDGINFIKQNVLQKQKDKI 553

Query: 599 EKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIES 633
             ++  +  +   +    T  L+     + IQ+++++ 
Sbjct: 554 IGRLRLLHGEKNIDTVNLTKELMEEKKSIDIQLNKLKG 591


>gi|15604689|ref|NP_221207.1| DNA primase [Rickettsia prowazekii str. Madrid E]
 gi|3861384|emb|CAA15283.1| DNA PRIMASE (dnaG) [Rickettsia prowazekii]
          Length = 616

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 175/633 (27%), Positives = 298/633 (47%), Gaps = 52/633 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   ++F + L   I IS+++ Q +   R+ +N     Y   CPFH EKTPSF  +DSK 
Sbjct: 24  MRVTQEFYEFLRNRINISDVVRQKLALTRKSSN-----YVGLCPFHQEKTPSFTVSDSKR 78

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F+YCF C   GD + F S + G S+ ES  +LA   G+ +P +  K ++  +   +++ +
Sbjct: 79  FFYCFGCKASGDVIKFTSNISGLSYNESAIKLANDYGIEIPKLTVKQKEFYEESDNILNI 138

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L       +  YL +R I    I+ F +G+AP +    +  L +K    
Sbjct: 139 LELANKFFRTQLT----PEILNYLYKRNITETTIKEFSIGFAPRNNKFEKFFLDKKIDIT 194

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +        I    +   Y+ F NR+  PIR+   +++ FGGR L   E  KYLNS ETI
Sbjct: 195 KLGQAGL--IGKCKNGKIYNLFSNRITIPIRNIYNKIVGFGGRVL-GNELPKYLNSFETI 251

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K   LY    A++   K  R           ILVEGY DV++L QAG   VV+SLGT
Sbjct: 252 VFQKSDILYGEHKAISSSYKKNRS----------ILVEGYFDVIALHQAGFNEVVASLGT 301

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ++TE  L  LW+    I+LC DGD+ G++A+ + I+L L  +    +++F+ L  G DPD
Sbjct: 302 SVTESHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLVNSEKKISFIRLPSGLDPD 361

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +   G   F KLI + + L +M+W  E   ++F T +E+A LE +LK+  N I D  L
Sbjct: 362 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKNFRTAEEKANLEKNLKDYCNKISDSNL 421

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y +  +D++ Q                  N   + +K  +       +       + 
Sbjct: 422 KASYYRFFKDQIWQ------------------NLVTKQKKIITPSSNSVLIASSHCYSEL 463

Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            + E A    LI  P +  E      + ++ ++N  L++  ++  ++ ++ K     EI 
Sbjct: 464 EMLEHAFCALLIKFPIMFAEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNK-VKENEIT 522

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +  F ++   L +        S       +D+   +     LYK++ L++ Q+E  
Sbjct: 523 AIVEKTSFFDIFLLLSKADNLFLDISFNKNNIRLDLLWQW-----LYKKYYLINLQQEYA 577

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                 + +  + EK  +    + ++  ++  +
Sbjct: 578 IS----INSNHDFEKVLLYKKEIIKIVNELQVL 606


>gi|91204870|ref|YP_537225.1| DNA primase [Rickettsia bellii RML369-C]
 gi|157826500|ref|YP_001495564.1| DNA primase [Rickettsia bellii OSU 85-389]
 gi|123388158|sp|Q1RKH8|PRIM_RICBR RecName: Full=DNA primase
 gi|91068414|gb|ABE04136.1| DNA primase [Rickettsia bellii RML369-C]
 gi|157801804|gb|ABV78527.1| DNA primase [Rickettsia bellii OSU 85-389]
          Length = 599

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 177/633 (27%), Positives = 298/633 (47%), Gaps = 49/633 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    +F + L   I IS+++ Q V   R+      G+Y   CPFH EKTPSF  +DSK 
Sbjct: 1   MKLAPEFYEVLRNRINISDVVRQKVVLTRK-----SGNYVGLCPFHQEKTPSFTVSDSKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F+YCF C   GD + F S + G S+ +S  +LA   GV +P +  K ++  +   +++ +
Sbjct: 56  FFYCFGCKAAGDVIKFTSNISGLSYNDSAIKLATDYGVEIPKLTQKQKEFYEESDEILNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L       +  YL+ER I +  I+ F +G+AP      +    +   + 
Sbjct: 116 LELANKFFKSQLT----PEILNYLNERNITNETIKEFSIGFAPRGNKFEKFFHDKNITNV 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +      +    D     Y  F NR+  PIR+   +++ FGGR + +G   KYLNSPET+
Sbjct: 172 QLGKAGLIGKREDG--EIYSLFSNRITIPIRNIYNKIVGFGGRVIGQG-LPKYLNSPETV 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY    A++   K           ++ ILVEGY DV+SL QAG   VV+SLGT
Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NYSILVEGYFDVISLHQAGFSEVVASLGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ++TE  L  LW+    I+LC DGD  G++A+ + I+L L  +    +++F+ L  G DPD
Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDSAGIKASVRTINLALPLINSEKKISFIRLPTGLDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +   G   F KLI   + L +M+W+ E   ++F T +++A LE +LK+  + I D  L
Sbjct: 339 DAVNKNGVDFFTKLIDTRISLSEMIWQIEYAGKNFKTAEDKANLEKNLKDYCSKISDSNL 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y +  +D++ Q                  N   + QK  ++ +  + L       + 
Sbjct: 399 RASYYRFFKDQIWQ------------------NLVTKQQKTVAKNV--NLLPLSSGYSEL 438

Query: 481 SLREAALLLTLINHPAILQEQY--QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            + E A    LI  P ILQE    + + ++ + N  L++  ++  S+ ++       EI 
Sbjct: 439 EILEHAFCALLIKFPQILQEFEIKEFILNLNFSNKLLEEFRNWYLSEVIDN-AVEAGEIA 497

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +  F ++   L          +   +   +D+     Q L        L ++   I
Sbjct: 498 AIVEKTSFFDIFLLLSEADNLFLDIAFNKDNVRLDL---LWQWLYKRYYLLNLQQEYAHI 554

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            K+   +T   + EK       + ++  ++  +
Sbjct: 555 TKEYV-ITNIDDYEKVLFYKKEILKIASELQDL 586


>gi|325478782|gb|EGC81893.1| DNA primase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 543

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 157/575 (27%), Positives = 262/575 (45%), Gaps = 56/575 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D I  ++    I ++IG+YVD  R  +      +   CPFH+EKTPSF  +D K  +
Sbjct: 4   ISDDKINQIVQSSNIVDIIGEYVDLKRSGS-----SFKGLCPFHNEKTPSFTVDDKKQLF 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD +SF+    G ++ +S++ LA  AG+ +     +  K  K    L  + +
Sbjct: 59  HCFGCGAGGDVVSFIMQKEGLNYPQSLEFLANKAGISIDYT--ENPKVNKRNNQLYEINK 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               F++ +L    D++   YL +RG+ S  +  F LGYA DS   L +++R K + EE 
Sbjct: 117 DIMMFYYKNLLT--DRKAQMYLKQRGLSSKIVNTFMLGYAKDSWNDLYDYIRSKNYKEED 174

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           I + GL I   +    YD++R+R+IFPI +  G+VI FGGR    G+  KYLNSPE+ +F
Sbjct: 175 IEQLGL-IKKSSKGNYYDKYRDRIIFPIINHYGKVIGFGGRA-VSGQMPKYLNSPESSVF 232

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K  NLY         +K             IILVEGYMDV++L   G+   V+SLGTAL
Sbjct: 233 KKRYNLYGLNVYKRQKRK------------EIILVEGYMDVIALNNHGLDIAVASLGTAL 280

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T+ Q  L+ + S  I +C+D D  G++A  KAI +       G   + + LS G+DPD F
Sbjct: 281 TKDQANLIKRYSDNIYICYDQDGAGIKATEKAIAI---FHDIGVNPSIISLSEGKDPDDF 337

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           IR  GK AFE+ I  +    +  +++  +  +  TP ER +      + ++ IK +  R 
Sbjct: 338 IRENGKDAFEEKIKNANDSYNYQYEKILDEYTKATPAERFDKLNLFVDFLSSIKQELTRE 397

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            +   +    +            Y +      ++  +           ++    +   ++
Sbjct: 398 IFINNVSKLFEIDKSTLKQAIDRYNKDTDLKIKNNGKSYN------KPIIVENKTNNFNI 451

Query: 483 REAALLLTLIN-------HPAILQEQYQ--------------ELADIRYDNNELQKLWSF 521
            E  +L    N       H     +  +              +++    D+ + + +  +
Sbjct: 452 NELEVLRLFFNQRSDYEKHRDFFDKAIEDEKINNVKTFLKEKDVSKFDLDDKDYKYILDY 511

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           +          L EE+ +++        LK+L  +
Sbjct: 512 IRD---NTNPILAEELKRKIILFSRKRELKRLKNR 543


>gi|301309361|ref|ZP_07215303.1| DNA primase [Bacteroides sp. 20_3]
 gi|300832450|gb|EFK63078.1| DNA primase [Bacteroides sp. 20_3]
          Length = 705

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 154/710 (21%), Positives = 273/710 (38%), Gaps = 106/710 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++ ++V   +R  N     Y   CPFH +K+PSF+ + SK   
Sbjct: 2   IDQPTIDRILDAANIVDVVSEFVTLRKRGIN-----YVGLCPFHSDKSPSFYVSPSKNIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CF+C   G  + F+      S+ ++++ LA    + +   +   ++K+    +  ++ +
Sbjct: 57  KCFACGEGGTAVHFIMKHEQLSYFDALRFLAKKYNIEIQERELTEKEKQIRSDRESMLIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A  +F   L    + +     Y  ERG+    I  F+LGY+ D R +L +   Q G+
Sbjct: 117 NSWAGQYFSTLLHEHVEGKSVGMRYFAERGLREDIIRKFQLGYSLDQRDALYKAATQAGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
            +E + + GL+I   ++    DRFR R+IFP+ +  G+V+AFGGR L K E   KY+NSP
Sbjct: 177 KKEFLEKTGLVI-AYDNGNVNDRFRGRVIFPVHTLSGKVVAFGGRVLKKDEKTAKYVNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK   LY  + A   + K  R            LVEGYMDV+ + Q GV+NVV+S
Sbjct: 236 ESEIYHKSNELYGIYFAKQAIMKQDR----------CFLVEGYMDVIGMHQVGVENVVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT+ Q+RL+ + +  I + +DGD  G++AA + ID+    L  G  V  VLL  GE
Sbjct: 286 SGTALTQGQIRLIHRFTNNITVLYDGDAAGIKAALRGIDM---LLEEGMNVKVVLLPAGE 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R +  + F + I ++         +     +   P +R+ L   +   +  I D
Sbjct: 343 DPDSFARSHSASEFAEFISQNETDFIRFKTKLLLAEAGGDPIKRSALISDIIRTVAIIPD 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHS--------GYGRYWKKNARHRDQKGPSQR---- 465
              R  Y +     ++   Q  + E +               +N         +      
Sbjct: 403 NIARSVYIRECSTTMEIDEQVLLNEVNKIRLNKEENQAAKSVRNTPPVQPPANTIPEYPD 462

Query: 466 --------------------------------------------LMQSSLVKGKLSKKPS 481
                                                           ++          
Sbjct: 463 FPGYQPYTPEEANTLPPENIPPPLPEDYIPEEEAGPPPTPPYEVPTAPNIQVQPKRSPFE 522

Query: 482 LREAALLLTLINHPA--ILQEQYQE------------------LADIRYDNNELQKLWSF 521
             E ALL  ++ +    +     +E                    D+ +     +++   
Sbjct: 523 AYELALLRYIVRYGERVLYDYVDEETNEHVIMRVADYIRFDLERDDLTFYTPAFKQMLDE 582

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQ 579
                  + +           +     L   L  D+                 D      
Sbjct: 583 AAEHCQNEGFMASRYFLAH-PDPNISRLAANLISDKYQLSKYHTKFRELEQEEDKLDYLV 641

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI---SILHEVHI 626
                  +   +  + ++I+ +I +   KG+ E+   L+   + L+E+  
Sbjct: 642 PREIYSMKDAYILYKIKDIQAKIKEAQNKGDMEQIFDLMKQNAHLNEIKN 691


>gi|239616749|ref|YP_002940071.1| DNA primase [Kosmotoga olearia TBF 19.5.1]
 gi|239505580|gb|ACR79067.1| DNA primase [Kosmotoga olearia TBF 19.5.1]
          Length = 577

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 144/635 (22%), Positives = 269/635 (42%), Gaps = 63/635 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           + ++ I  +   I I  L+G+YV+  +  +      Y   CPFH +  PSF+ +  K F+
Sbjct: 2   FDKEIIDRIKSSIDIVELVGRYVNLQKSGS-----YYRGLCPFHSDSDPSFYVSPGKQFF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C V GD ++F   +    F E+V++LA IAG+ LP       + +K    L     
Sbjct: 57  HCFGCGVSGDVITFYEKIENLPFSEAVEKLAEIAGIELPKKYSVRTEYDKYTQSL---NI 113

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           +A  +    L       L Y L ERG     +  F++G++P +R  L++ +   G   E+
Sbjct: 114 LAEAYHKELLSGKHPDVLEYLLKERGFSEETLREFRIGFSPGNRTFLKKLVSNFGVKLEE 173

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +++AG+L+  ++    +DRF  R+I PI +  G+VI FGGR +      KY+NSPET  F
Sbjct: 174 LLKAGVLVKKNSD--YFDRFSKRIIIPIHNENGKVIGFGGRIIPGETGSKYINSPETRYF 231

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG+ L+N   A   ++             ++++ EGY D ++L +AG++N V  LGT L
Sbjct: 232 VKGRVLFNLHRAKKSVK----------ELDYVVITEGYFDSMALYEAGIENNVGVLGTNL 281

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L+LL   +  ++   D D  G  A  +++DL       G       ++  +D    
Sbjct: 282 TRQHLKLLKTYTNNLLFLMDSDSAGKNATLRSLDLAESE---GFSTAVAKITGTKDAGEL 338

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            +  G  A    +  ++P                TP  + +L   L   ++         
Sbjct: 339 FKNEGPKALVDTLKNAIPGAVFRVDYLALKVDITTPQGKQKLLEFLIPTLSR-------- 390

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y Q   +   QL  K I+E +                    R     +++ + + K   
Sbjct: 391 -YLQRADNAGFQLTVKAISEKTNLLIKE-------IIAVAKGREKPQKILRERSTFKLKQ 442

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  LL     HP +  E  + +  +   +   + L  F+                    
Sbjct: 443 IEKDLLSIYFGHPELRSEVARVVDFLE-TSEAFRYLVKFIK------------------K 483

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           ++ F E++ ++D ++  + + +     +I   R+  +  +  +   +++  Q EEI++++
Sbjct: 484 KQDFNEIIDEIDEKIGPSLMEAVEYSTDISMARKMLKD-IETHVDKKIIREQIEEIDRKL 542

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQ-IESQEA 636
            +V    +      L+    E+   + + ++  EA
Sbjct: 543 RKVI---DPAMKESLMIRRMELTRLLKRTLKGGEA 574


>gi|225870338|ref|YP_002746285.1| DNA primase [Streptococcus equi subsp. equi 4047]
 gi|225699742|emb|CAW93504.1| DNA primase [Streptococcus equi subsp. equi 4047]
          Length = 610

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 157/635 (24%), Positives = 277/635 (43%), Gaps = 48/635 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +  ++ I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 17  AIDKEMISQIKHNVNIVDVIGEVVHLSRAGR-----HYLGLCPFHKEKTPSFNVIEDRQF 71

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIR 119
           ++CF C   GD   F+       F+ESVQ +A  AG+ + V   +    +K+     LI 
Sbjct: 72  FHCFGCGKSGDVFKFIEEYRQVPFLESVQIVADKAGMAVTVAPSQTSLSQKQHPHQALID 131

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L E A  F+H  L      +R   YL +RG+D   IE F++G AP+    L + L +K +
Sbjct: 132 LHEDAAKFYHAVLMTTKIGQRAKEYLYQRGLDDQLIEYFRIGLAPNEMDYLYQALSKK-Y 190

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234
           +E ++  +GL    + S   YD FR+R++FP+   +G +IAF GR  ++ +      KY 
Sbjct: 191 TEAQLTASGLFHVSEQSNAIYDAFRHRIMFPLCDDKGNMIAFSGRIWAREDIEKQQAKYK 250

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS  T+LF+K   LY+   A   + K          +  + L+EG+MDV++  +AG  N 
Sbjct: 251 NSRATVLFNKSYELYHLDKAKPIIAK----------THEVFLMEGFMDVIAAYRAGYGNT 300

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+S+GTALT   +R L +L+ ++VL +DGDD G  A  K+++L+    +       V + 
Sbjct: 301 VASMGTALTPEHVRHLKQLTQKVVLTYDGDDAGQNAIAKSLELLADFQVE-----IVKIP 355

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD F++ +   A  +L+  S            +  + +    +     H+   I  
Sbjct: 356 NRMDPDEFVQQHSPEALAELLQHSRISSVEFLIDHLKPENMDNLQSQIAYVEHISQIIAQ 415

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                 +  Y   + D L       + +     R   + +  +  +    +    +L   
Sbjct: 416 APSITAQNSYINKVADLLPDFDYFQVEQSVNALRLQDRQS-LQQGQASQPKASLVTLPIN 474

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K     +  E+ LL  L++H  +L E      D  +D   LQ L+  L +          
Sbjct: 475 KSMTALAKTESHLLHRLLHHDYLLNEFRHR-PDFYFDTPALQTLYEQLKA---------- 523

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                ++      +L +++++        +   E    ++     + + L K+ R L RQ
Sbjct: 524 ---TGQITSYDLSQLSEEVNQAYYRVLEENLPDEIASGEIEDILSRQMTLLKQ-RELHRQ 579

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                KQI + ++KG+ +     +        ++ 
Sbjct: 580 ----GKQIRESSSKGDHQMALEALERFIAEKRKME 610


>gi|1943994|dbj|BAA19493.1| dnaG [Staphylococcus aureus]
          Length = 572

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 141/598 (23%), Positives = 245/598 (40%), Gaps = 35/598 (5%)

Query: 39  YWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
               CPFHDEKTPSF  ++ K   +CF C   G+   F   +   SF+E+V+ L     V
Sbjct: 1   MIGLCPFHDEKTPSFTVSEDKQICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNV 60

Query: 99  PLPVV---DPKIEKKEKIQTDLIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAI 154
            + +         +       +I + E+  +F++++L K    ++   YL ERG     I
Sbjct: 61  AVDIEATQSNSNVQIASDDLQMIEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALI 120

Query: 155 EMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR 214
           +   +G+APDS +   + L++KG+  E   EAGLL   + + + YDRFRNR++FP+++++
Sbjct: 121 KERGIGFAPDSSHFCHDFLQKKGYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQ 180

Query: 215 GQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFI 274
           G+++ + GRT   G+  KYLNSPET +F K K LYN   A   ++K             I
Sbjct: 181 GRIVGYSGRT-YTGQEPKYLNSPETPIFQKRKLLYNLDKARKSIRKL----------DEI 229

Query: 275 ILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA 334
           +L+EG+MDV+    AG++NVV+++GT L++  +  + KL+  I L FDGD  G  A  K 
Sbjct: 230 VLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKT 289

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
                  L  G  V  + L  G DPD +I  YG  AF   +               ++  
Sbjct: 290 GQ---HLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEI 346

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----W 450
            +           L + I+ +K   L+      +        ++   E            
Sbjct: 347 AHNDLSYERYLKELSHDISLMKSSILQQKAINDVAPFFNVSPEQLANEIQFNQAPANYYP 406

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
           +      D+ G         + +     +    E A L  L+         Y+ +    +
Sbjct: 407 EDEYGGYDEYGGYIEPEPIGMAQFDNLSRREKAERAFLKHLMRDKDTFLNYYESVDKDNF 466

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            N   + ++  L   + E   +   +  Q +      E L  L++               
Sbjct: 467 TNQHFKYVFEVLHDFYAENDQYNISDAVQYVNSNELRETLISLEQY--------NLNGEP 518

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +    Y   +    +        E +  ++ + T  G+ E     +  +   + + 
Sbjct: 519 YENEIDDYVNVINEKGQET-----IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 571


>gi|189219556|ref|YP_001940197.1| DNA primase [Methylacidiphilum infernorum V4]
 gi|189186414|gb|ACD83599.1| DNA primase [Methylacidiphilum infernorum V4]
          Length = 595

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 151/627 (24%), Positives = 254/627 (40%), Gaps = 42/627 (6%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           ++FI+ +     I  ++ +YV   R  +      + +  PF  EKTPSF  +  K  + C
Sbjct: 7   KEFIEKVRQANDIVEVVSEYVVLKRAGSK-----FKSLSPFKKEKTPSFFVDPQKQLFKC 61

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRLIE 122
           FS    G    F+       FI +++ LA  AG+  P      E+ E  + +  L  L E
Sbjct: 62  FSSGYGGTVFDFIMYYEKLDFIGALKHLARRAGLSFPSSFRYEEQNESLRQKQKLWELHE 121

Query: 123 VATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
              +++   L      +    YL ER ID    + F LGYA +S   L      K    E
Sbjct: 122 AVAEYWTKILVDEPSGEPARAYLKERNIDLCIAKEFGLGYALNSWDGLLRWASTKKGLLE 181

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +  AGL+I  ++S   YDRFR RL+F I    G+V+ F GR +   +  KYLNSPE+ +
Sbjct: 182 MLEPAGLVIRTEHS-KIYDRFRGRLMFRITDEAGKVVGFSGRLIEGEQGPKYLNSPESPI 240

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KGK LY F  A   +            +   IL EG++D++ L  AG    V++ GTA
Sbjct: 241 FTKGKILYGFHKAKRAIA----------ETGKAILCEGHIDLIRLHAAGFSTAVATQGTA 290

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE+Q  LL +    + + +DGD  G  AA +A ++    L  G  +    L  GEDPDS
Sbjct: 291 LTEHQAGLLKRFCSEVFVAYDGDRAGEEAALRASEI---LLAEGLEIKIAQLPPGEDPDS 347

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            I   G+ AFEK++ E+LP    +  +     S      ++++   +   +  I D   R
Sbjct: 348 LISKKGREAFEKVLEEALPYPSFVLNKACLEYSPQQAFGKSKIAEKMAGLLIKISDPVRR 407

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           +  S  +  RL    + +  + +      K+      ++   ++     +    L     
Sbjct: 408 HTASLEVAARLGISLEIFEQKMAQLDTANKRPEELNRKEDQEKQSWGEKIPPVILES--- 464

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                 L  L+ +P  +    +             +L   L+     QK        + L
Sbjct: 465 ------LWFLMEYPQFIAHFKETFPAGVLSAMPAAELLIRLYDFEEAQKTVSISSFLETL 518

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +   G ++           L          +  +  Q+ L L  R + L R K      
Sbjct: 519 SQEQKGIVVS-----FMFHPLQEKPEGYTPEEHCRILQEGLFLLWRQKCLERIK------ 567

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQI 628
           +   +     ++ +  +  + ++  ++
Sbjct: 568 LQSQSGILSGQEISAKLKEIVDLARKL 594


>gi|266843|sp|P30103|PRIM_RICPR RecName: Full=DNA primase
 gi|434680|gb|AAB81403.1| DNA primase [Rickettsia prowazekii]
 gi|292572522|gb|ADE30437.1| DNA primase [Rickettsia prowazekii Rp22]
          Length = 593

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 175/633 (27%), Positives = 298/633 (47%), Gaps = 52/633 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   ++F + L   I IS+++ Q +   R+ +N     Y   CPFH EKTPSF  +DSK 
Sbjct: 1   MRVTQEFYEFLRNRINISDVVRQKLALTRKSSN-----YVGLCPFHQEKTPSFTVSDSKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F+YCF C   GD + F S + G S+ ES  +LA   G+ +P +  K ++  +   +++ +
Sbjct: 56  FFYCFGCKASGDVIKFTSNISGLSYNESAIKLANDYGIEIPKLTVKQKEFYEESDNILNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L       +  YL +R I    I+ F +G+AP +    +  L +K    
Sbjct: 116 LELANKFFRTQLT----PEILNYLYKRNITETTIKEFSIGFAPRNNKFEKFFLDKKIDIT 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +        I    +   Y+ F NR+  PIR+   +++ FGGR L   E  KYLNS ETI
Sbjct: 172 KLGQAGL--IGKCKNGKIYNLFSNRITIPIRNIYNKIVGFGGRVL-GNELPKYLNSFETI 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K   LY    A++   K  R           ILVEGY DV++L QAG   VV+SLGT
Sbjct: 229 VFQKSDILYGEHKAISSSYKKNRS----------ILVEGYFDVIALHQAGFNEVVASLGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ++TE  L  LW+    I+LC DGD+ G++A+ + I+L L  +    +++F+ L  G DPD
Sbjct: 279 SVTESHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLVNSEKKISFIRLPSGLDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +   G   F KLI + + L +M+W  E   ++F T +E+A LE +LK+  N I D  L
Sbjct: 339 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKNFRTAEEKANLEKNLKDYCNKISDSNL 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y +  +D++ Q                  N   + +K  +       +       + 
Sbjct: 399 KASYYRFFKDQIWQ------------------NLVTKQKKIITPSSNSVLIASSHCYSEL 440

Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            + E A    LI  P +  E      + ++ ++N  L++  ++  ++ ++ K     EI 
Sbjct: 441 EMLEHAFCALLIKFPIMFAEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNK-VKENEIT 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +  F ++   L +        S       +D+   +     LYK++ L++ Q+E  
Sbjct: 500 AIVEKTSFFDIFLLLSKADNLFLDISFNKNNIRLDLLWQW-----LYKKYYLINLQQEYA 554

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                 + +  + EK  +    + ++  ++  +
Sbjct: 555 IS----INSNHDFEKVLLYKKEIIKIVNELQVL 583


>gi|206900923|ref|YP_002251029.1| DNA primase [Dictyoglomus thermophilum H-6-12]
 gi|206740026|gb|ACI19084.1| DNA primase [Dictyoglomus thermophilum H-6-12]
          Length = 577

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 176/627 (28%), Positives = 270/627 (43%), Gaps = 62/627 (9%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            DF+ ++   + I ++I +YV+  +   N     Y   CPFH EKTPSF+ +  KG Y+C
Sbjct: 6   EDFVDEVKQRVNIVDVISRYVNLKKTGKN-----YVGLCPFHQEKTPSFYVSPDKGLYHC 60

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C   GD  +FL      +F E+++ LA  AG+ +P    K E+       ++ + +  
Sbjct: 61  FGCGAAGDVFTFLINYRNLTFREALEELAREAGLEIPK---KEEQISTEANIVLEINKAV 117

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
             F+H  L +        YL +RGI S   E F LGYAP +   L  +L +KGFS++ II
Sbjct: 118 ATFYHIYLNSKYGAEGKLYLKKRGISSEIQEKFLLGYAPLNPTLLLRYLEKKGFSKDDII 177

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
           +A +L    +     D F  R+IFPI + RG+VI FGGR+L  GE  KYLNSPE+  F K
Sbjct: 178 KAKVLYFVRDEWK--DPFAGRVIFPIVNPRGKVIGFGGRSL-TGEEPKYLNSPESEFFSK 234

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
           GKNLY  + A   ++K              ILVEGYMD +SL QAG+ NVV+SLGTA T 
Sbjct: 235 GKNLYALYQAKESIKK----------EGEAILVEGYMDAISLHQAGITNVVASLGTAFTS 284

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
           +Q +LL   + +++L +D D  G +A  +A+ L+    I        L    +DPD FI 
Sbjct: 285 HQAKLLKSYTNKVILSYDQDSAGYQAGKRALSLLEVEGIE--VYWLSLPKDVKDPDEFIH 342

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR--- 421
            Y K  F K + ES P +D L +        N  +   E+   L + I   K+  ++   
Sbjct: 343 KYSKEEFLKFVKESKPSLDFLIENTLSL-PMNFKERLEEIIEILTSSILRSKNILVQQEK 401

Query: 422 -YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y   I  RL    +    E      +  ++ +   +   ++    S   +  L    
Sbjct: 402 IKQYLPLISKRLGVPEEGIQKEIQK-RIFSDRSYKSNVKIEITRYFGVSKTEEVLLGLIL 460

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                + +  +              +   +     Q++                      
Sbjct: 461 LGINNSQIKNM--------------SPEDFSFPLYQEVLKK------------WRVWEGS 494

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L E  F  L  +  R + D  + S     N  D+           +  + ++R  EE+ K
Sbjct: 495 LEE--FLNLWDEDKRVLIDRAISSGEEFINQEDIIPFLWDHFQKLRIKKEINRLIEELSK 552

Query: 601 QIAQVTAKGEAEKTAIL--ISILHEVH 625
                    E E    +  +  L EV 
Sbjct: 553 L---DDPIKEKELMEEIYFLRSLLEVK 576


>gi|33861496|ref|NP_893057.1| DNA primase [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|33634073|emb|CAE19398.1| CHC2 zinc finger:Toprim domain [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 678

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 151/628 (24%), Positives = 278/628 (44%), Gaps = 53/628 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           +     I+++     I ++I +++   ++       ++   CPFHD+  PS   + +K F
Sbjct: 4   SIHPRTIQEVKDKADIVDVISEHIVLKKKGK-----EFVGICPFHDDSKPSMTVSPAKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117
           YYCFSC   G+ + FL      +F + V  LA    + +  VD   ++  K     + +L
Sbjct: 59  YYCFSCGAGGNSIKFLMEFTRNNFTDVVLSLAKKNDINVINVDGPQQEIYKKQLSRREEL 118

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175
            +++ V  ++F   L N+  K  H+Y   +R ++   I  F+LGYAP+S   L  +L + 
Sbjct: 119 YKILRVTKEWFKSQLNNSLGKEAHHYLTSQRNLNIKNINDFELGYAPNSWNDLFNYLSKV 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           + F  + I+ AGL++  DN+   YDRFRNRLI PI   +G+V+AFGGR+L  G+  KYLN
Sbjct: 179 EKFPLKLILSAGLVVSKDNTDKVYDRFRNRLIVPIFDMQGRVVAFGGRSL-DGQEPKYLN 237

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET +F KGK L+ F  A + ++K              ++VEGY DV+SL   G+ N V
Sbjct: 238 SPETEVFEKGKMLFAFDKASSNIRK----------RDKAVVVEGYFDVISLHSKGITNSV 287

Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352
           +SLGTAL +YQ+  L + +    I++ FD D+ G  A  + I+ V    +        + 
Sbjct: 288 ASLGTALNKYQISQLCRCTDSKNIIINFDSDNAGRLATKRVINEVESLSLHDQINLKILE 347

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           +   +DPD +++      +  LI  +   +D    +  +N+  +  D    +   L   +
Sbjct: 348 IKSSKDPDEYLKENTPEDYFNLIDNASFWIDWEIDQIFDNKDLSKSDIFQNVISSLVKLL 407

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           +       R +Y Q + +RL     +   +     R   K  R   +    ++  + S  
Sbjct: 408 SKFPQSATRTHYLQKVSERLSMGQARLAIKFEEDLRKQVKGFRWHGRSKKFEQPSEVSQR 467

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFL------- 522
           +          E+ ++   ++ P       +EL       ++   ++ +W  +       
Sbjct: 468 EKN--------ESEIIYYYLHCPEHRLFIREELLKREINIFNTEYIRLVWESISTIEVNN 519

Query: 523 --FSDFVEQKYFLPEEIHQRLCERGFGELLK--------QLDRQVRDAGLWSATTEANIV 572
              +   + K    ++++          LL         ++  ++             + 
Sbjct: 520 LSANYLDDLKDPNNKQLNNEFTSINLISLLPDHLALNDLEVSNKINTFINPDELFLTTLK 579

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +      L+L +R++ L R +  IE 
Sbjct: 580 NSKHNLLGTLSLLERYKSLKRCRHLIES 607


>gi|307718767|ref|YP_003874299.1| DNA primase [Spirochaeta thermophila DSM 6192]
 gi|306532492|gb|ADN02026.1| DNA primase [Spirochaeta thermophila DSM 6192]
          Length = 596

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 169/638 (26%), Positives = 273/638 (42%), Gaps = 55/638 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++   + + +L+G+Y    R         Y   CPFH +  PSF  +  KG 
Sbjct: 3   RIPQEIIEEIQRRVDVLSLVGEYTSLRRTGN-----SYMGLCPFHADSDPSFSVDPEKGL 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL 120
           +YCF CH  G+   F+  +  C+F E+V+RLA  AGV +   V P+ E   K +  L  L
Sbjct: 58  FYCFGCHKGGNIFQFVMEVEHCTFYEAVERLAERAGVSITAKVTPEEEASFKKERALQDL 117

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHA-IEMFKLGYAPDSRYSLREHLRQKGF 178
                  F H L +    +    Y   RGID     + F LGYAP     L   LR+KG+
Sbjct: 118 NLRLVGLFEHFLHSREEGRAAREYCVSRGIDLSWARDTFHLGYAPHDPCWLYRFLRRKGY 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           SEE +  +GL          Y  F +RLIFPI    G+V+ FGGR L + +  KYLNSPE
Sbjct: 178 SEELLHVSGLFSAKREG---YAIFSHRLIFPIYDVSGKVVGFGGRALREDQQPKYLNSPE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF K + LY    AL  L+K+ +          +ILVEGY+DVL L Q G+ NVV+ L
Sbjct: 235 TSLFKKKRLLYGLHRALPELKKTKK----------VILVEGYIDVLLLHQHGIMNVVAPL 284

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +  Q   L + +  I+  FDGD  G RAA +A  +             V+  RGED
Sbjct: 285 GTAFSREQAIQLKRYADSIIFFFDGDTAGERAAQRAGMICE---AVDFSCRMVVPPRGED 341

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD-ERAELEIHLKNCINHIKD 417
           P SF++  G     ++++E   +   L +R  +     + + +  E    + + I  ++ 
Sbjct: 342 PASFLQKKGVEEVRQILMEEKDVFQCLLERRVKEGILTSSETDMREFVTSMFSYIRSVQS 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R    + + + +         +   +      +A      G ++R            
Sbjct: 402 TMRRERLLEEMAESMGVSLGAIKEDFDRFQSSEGNSAPLSTTMGRNRRRTT--------- 452

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  L   L  HP         + +   ++   ++L+  L           P+ +
Sbjct: 453 ------EVFLFQALCAHPEYYTVVRPLIQEDALEDASAKELFFALEECLRAGTMDRPDAV 506

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            + + +    EL  +         ++S   E  +  VR+   +      R + L R++ E
Sbjct: 507 LEHVTDEKARELALE--------AVFSGEFEVPLEAVREAVFRW-----REQWLHRRRRE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           IE++IA    +G       L+     +  ++ ++   E
Sbjct: 554 IERKIALYEREGGD--IQELLLEKMYLDKELEKLRGYE 589


>gi|51474027|ref|YP_067784.1| DNA primase [Rickettsia typhi str. Wilmington]
 gi|81389910|sp|Q68VQ4|PRIM_RICTY RecName: Full=DNA primase
 gi|51460339|gb|AAU04302.1| DNA primase [Rickettsia typhi str. Wilmington]
          Length = 593

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 175/633 (27%), Positives = 299/633 (47%), Gaps = 52/633 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   ++F + L   I IS+++ Q +   R+ +N     Y   CPFH EKTPSF  +DSK 
Sbjct: 1   MRVTQEFYELLRNRINISDVVRQKLALTRKSSN-----YVGLCPFHQEKTPSFTVSDSKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F+YCF C   GD + F S + G S+ ES  +LA   G+ +P +  K ++  +   +++ +
Sbjct: 56  FFYCFGCKASGDVIKFTSNISGLSYNESAIKLANDYGIEIPKLTVKQKEFYEESDNILNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L       +  YL++R I    I+ F +G++P +    +  L +K    
Sbjct: 116 LELANKFFRTQLT----PEILNYLNQRNITETTIKEFSIGFSPRNNKFAKFFLDKKIDIT 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
                  +    +     Y+ F NR+  PIR+   +++ FG R L  G   KYLNS ETI
Sbjct: 172 TLGQAGLIGKRKNG--EIYNLFSNRITIPIRNIYNKIVGFGARVLGNG-LPKYLNSYETI 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K   LY    A++   K  R           ILVEGY DV++L QAG   VV+SLGT
Sbjct: 229 VFQKNDTLYGEHKAISSSYKKNRS----------ILVEGYFDVIALHQAGFSEVVASLGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ++TE  L  LW+    I+LC DGD+ G++A+ + I+L L  +    +++F+ L  G DPD
Sbjct: 279 SVTENHLHKLWRACDEIILCLDGDNAGIKASIRTINLALPLVNSEKKISFIRLPSGLDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +   G   F KLI + + L +M+W  E   ++F T +E+A LE +LK+  N I D  L
Sbjct: 339 DVVNKNGADFFAKLIDKRISLSEMIWYIEYSGKNFKTAEEKANLEKNLKDYCNKISDSNL 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y +  +D++ Q                  N   + +K  +Q    S +       + 
Sbjct: 399 KASYYRFFKDQIWQ------------------NLVIKQKKIITQNFNSSLIASSHCYSEL 440

Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            + E A    LI  P +L E      + ++ ++N  L++  ++  ++ ++ K     EI 
Sbjct: 441 EMLEHAFCALLIKFPIMLAEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNK-VEESEIT 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +  F ++   L +        S       +D+   +     LYK++ L++ Q+E  
Sbjct: 500 AIVEKTSFFDIFLLLSKADNLFLDISFNKNNIRLDLLWQW-----LYKKYYLINLQQEYA 554

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                 +    + EK  +    + ++  ++  +
Sbjct: 555 IS----INGNHDFEKVLLYKKEILKIVNELQVL 583


>gi|78776224|ref|YP_392539.1| DNA primase [Sulfurimonas denitrificans DSM 1251]
 gi|78496764|gb|ABB43304.1| DNA primase [Sulfurimonas denitrificans DSM 1251]
          Length = 550

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 141/600 (23%), Positives = 255/600 (42%), Gaps = 66/600 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I+ L   + I +++G +V+  +   N     Y A CPFHDEK+ SF  + SK  Y
Sbjct: 2   ITQDSIEALKARLDIVDVVGSHVELKKTGAN-----YKAPCPFHDEKSASFVVSPSKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      ++ E++++LA+     L   D K  K          +++
Sbjct: 57  HCFGCGAGGDSIKFVMEFEKLNYPEALEKLASTYNFSLSYSDNKSTKSSSG------IMQ 110

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               ++H+     ++ +   Y+ ERGI   +IE F +GYAPDS  +    ++ +  S  +
Sbjct: 111 KIDSWYHYLF--TKNPQAISYIKERGIYESSIEKFGIGYAPDS-NATISFIKSQLLSMNE 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
            I   + I G++ + +Y RF  R+ FPI S+ G ++ FGGRT+  G   KY+NSPET  F
Sbjct: 168 AI--EMGIVGNDGSRAYARFIERITFPIHSANGTIVGFGGRTI-TGHQAKYVNSPETPYF 224

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           +K + LY +  A   + K          +  I++ EGY+DV+ L QAG  N V++LGTAL
Sbjct: 225 NKSRLLYAYHHAKQTIHK----------TKEIVITEGYLDVIMLHQAGFTNAVATLGTAL 274

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L +L K  P++++ +DGD  G  AA KA  +       G     V+ S G DP   
Sbjct: 275 TSEHLPILRKGEPKVIMAYDGDKAGRAAALKASKI---LSAGGFNGGVVIFSDGLDPADM 331

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++         +     P ++ +        +   P  R          +  +    L+ 
Sbjct: 332 VKNGAVEELSNMFRAPQPFIEFVLDEILSLYNLRDPKARELCMQDAIGYLKTL-SAMLQE 390

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   +  RL                           K  ++  +  +L     ++   +
Sbjct: 391 EYKSYLASRLGLSPSYI--------------------KITNKSNINQNLPFIDKNRHRDM 430

Query: 483 REAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            E  L+ T++ HP  + +    L    +++ ++EL    S            +   + ++
Sbjct: 431 WELTLIKTVLEHPEFIDQILDVLDPSLLKFHSSEL----SLALRGEFSHPQLMAIAVDEQ 486

Query: 541 LCERGFGELLKQ------LDRQVRDAGLWSATTEANIVDV---RQGYQQALALYKRFRLL 591
           +      + L+       +    R+    +  ++    +     + ++  + L KR  L+
Sbjct: 487 IKALNSEDALRAELVSFLMKHYEREYKKVNVLSDITFEEKAFYIRKFKGKIELLKRGELV 546


>gi|195977962|ref|YP_002123206.1| DNA primase [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195974667|gb|ACG62193.1| DNA primase DnaG [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 603

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 157/635 (24%), Positives = 276/635 (43%), Gaps = 49/635 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +  ++ I ++IG+ V   R         Y   CPFH EKTPSF+  + + F
Sbjct: 11  AIDKEMISQIKHNVNIVDVIGEVVHLSRTGR-----HYLGLCPFHKEKTPSFNVIEDRQF 65

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIR 119
           ++CF C   GD   F+       F+ESVQ +A  AG+ + +   +    +K+     LI 
Sbjct: 66  FHCFGCGKSGDVFKFIEEYRQVPFLESVQIVADKAGMAVTIAPSQASLGQKQHPHQALID 125

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L E A  F+H  L      +R   YL +RG+D   IE F++G AP+    L + L +K +
Sbjct: 126 LHEDAAKFYHAVLMTTKIGQRAKEYLYQRGLDDQLIEHFRIGLAPNEMDYLYQALSKK-Y 184

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234
           +E ++  +GL    + S   YD FR+R++FP+   +G +IAF GR  ++ +      KY 
Sbjct: 185 TEAQLTASGLFHVSEQSNAVYDAFRHRIMFPLCDDKGNMIAFSGRIWAREDIEKQQAKYK 244

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS  T+LF+K   LY+   A   + K          +  + L+EG+MDV++  +AG  N 
Sbjct: 245 NSRATVLFNKSYELYHLDKAKPIIAK----------THEVFLMEGFMDVIAAYRAGYGNA 294

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           ++S+GTALT   +R L +L+ R++L +DGDD G  A  K+++L+    +       V + 
Sbjct: 295 IASMGTALTPEHVRHLKQLTQRVILTYDGDDAGQNAIAKSLELLTDFQVE-----IVKIP 349

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              DPD F++ +   A  KL+  S            +  + +    +     H+   I  
Sbjct: 350 NRMDPDEFVQQHSPEALAKLLQHSRISSVEFLIDHLKPENMDNLQSQIAYVEHISQIIAQ 409

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                 +  Y   + D L       + +     R   + +           L+  +L   
Sbjct: 410 APSITAQNSYINKVADLLPDFDYFQVEQSVNALRLQDRQSLQGQTSQSKASLV--TLPIN 467

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K     +  E+ LL  L++H  +L E      D  +D   LQ L+  L +          
Sbjct: 468 KSMTALAKTESHLLHRLLHHDYLLNEFRHR-PDFYFDTPALQTLYEQLKA---------- 516

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                ++      +L +++++        +   E    ++     + + L K+ R L RQ
Sbjct: 517 ---TGQITSYDLSQLSEEVNQAYYRVLEENLPDEIASGEIEDILSRQMTLLKQ-RELHRQ 572

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                KQI + ++KG+ +     +        ++ 
Sbjct: 573 ----GKQIRESSSKGDHQMALEALERFIAEKRKME 603


>gi|255327240|ref|ZP_05368314.1| DNA primase [Rothia mucilaginosa ATCC 25296]
 gi|255295520|gb|EET74863.1| DNA primase [Rothia mucilaginosa ATCC 25296]
          Length = 708

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 132/458 (28%), Positives = 206/458 (44%), Gaps = 28/458 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I ++     I  +I  YV           G +   CPFHDE+TPSF+     G Y
Sbjct: 5   IRKEDIDEVRARTDIREIIEGYVSLKSAG----IGTFKGLCPFHDERTPSFNVRPQVGSY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   GD  SF+ A+   SF+E+V+RLAA  G  L      P    +  ++  L+  
Sbjct: 61  HCFGCGESGDVYSFVMAMEHTSFVETVERLAARIGYTLHYEGGKPGDRYEAGMRRRLLDA 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            ++A +FF  +L +A  +    +L  RG D  A   F +GYAP     L +HLR +GF++
Sbjct: 121 HKMAAEFFERNLYSADAQEAQRFLGARGFDPAATRKFGVGYAPRGWDHLLKHLRSQGFTD 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
           E++   G+  +G+     YDRFR R+I+PIR+  G+ I FG R L   +   KYLN+PET
Sbjct: 181 EELKATGMFSEGNR--GLYDRFRGRIIWPIRTIAGETIGFGARRLFDDDQGPKYLNTPET 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            L+ K + LY    A   + K          +  +++VEGY DV++   AG+   V++ G
Sbjct: 239 QLYKKSQVLYGIDLAKRDMTK----------TKQVVIVEGYTDVMAAHLAGITTAVATCG 288

Query: 300 TALTEYQLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           TA     ++++ ++         I+  FDGD  G +AA  A       +    +    + 
Sbjct: 289 TAFGPGHIKMVRRMITDDGSGGEIIFTFDGDAAGQKAAMAAFQEDQRFVA---QTFVAVA 345

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  A   LI    PL +             T + R      +   I 
Sbjct: 346 ENGMDPCDLRLHKGDAAVRSLIASRRPLFEFAIDSTLAKYDLATLEGRVLAMRAIAPIIA 405

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
            IKD+ LR  Y + +  +L     +     +    + K
Sbjct: 406 GIKDRDLRPAYMRKVSGQLGLELDEIQRAVAYAQNHPK 443



 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 67/192 (34%), Gaps = 7/192 (3%)

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ-EQY 502
                +  +N +    +  +        +        +  E A L   + HP ++  EQ+
Sbjct: 521 QNAAAHPPRNIQPASPQPEATAPAVEEFLTPDPRDPIARLEKAALEIALQHPELISVEQW 580

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
           + LA +++     +++ + +             E    +       +   +         
Sbjct: 581 RNLATVQFRYRTHREVAAGIIHAATVMAPTPGIEWINCVRSGAVEGVHPAIAELAV---- 636

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
            S    ++   +      AL      + ++RQK ++  ++ Q++A  + E+   +   L 
Sbjct: 637 -SPLPVSSAERLPGFVTGALNALF-EQQIARQKSDLMMRLEQLSANPDDEEFEAVQRQLL 694

Query: 623 EVHIQIHQIESQ 634
           E+ ++  Q+ +Q
Sbjct: 695 ELEMRRRQLSAQ 706


>gi|320527309|ref|ZP_08028494.1| DNA primase [Solobacterium moorei F0204]
 gi|320132333|gb|EFW24878.1| DNA primase [Solobacterium moorei F0204]
          Length = 587

 Score =  307 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 134/637 (21%), Positives = 262/637 (41%), Gaps = 58/637 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I ++IG Y+   R+        Y A CPFHD+  PS   +  K  
Sbjct: 3   KISDHDINAIREKADIVDVIGHYIQVHRKGN-----SYVAICPFHDDHDPSMSISPEKKI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG--VPLPVVDPKIEKKEKIQTDLIR 119
           Y CF C   G+  +F+      +F E+V R+A++    + + V   +   K+  +  L  
Sbjct: 58  YKCFVCGSGGNVYTFVQNYENITFPEAVGRVASLINYPLQVDVDIRQRSSKDPHKEALYN 117

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           ++  A  +  + L          YL++RG+ +  I+ F++GY P+   +L   L  KGFS
Sbjct: 118 VMNAAIQYMMYQLDTVEALNEKKYLEKRGLTADLIQEFQIGYNPNQ-TALYHFLHAKGFS 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  +  A L+   ++    +D F  R+ FPI    G  I F  R L      KY+N+ ET
Sbjct: 177 DADMNGANLIRINES--GIHDTFAGRITFPIHDQYGNPIGFSARILDPNNPSKYINTNET 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KG  +YN+  A    +K             I + EG  DV++  +AG+ N V +LG
Sbjct: 235 DIFTKGDIVYNYHRAKAVARK----------EGKIYVCEGVTDVIAFAKAGIFNAVCTLG 284

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ TE Q+ LL  ++ +IV C+DGD  G  A  +A+ +       G  V+ +    G+DP
Sbjct: 285 TSCTERQIHLLKNIAAKIVFCYDGDRAGQAATLRAVHMAR---KAGCDVSVIRNLTGKDP 341

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D  +R  G    + ++ + +  ++ + + +    + N   ++ EL   ++  I  + D+ 
Sbjct: 342 DELVREQGTEGLQSVLKDEVTWMEFVIEYQVAQTNLNNYSDKKELVRKVQADIATLADEV 401

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R Y++Q + +                             +  ++ + Q+   K  +   
Sbjct: 402 DRRYFTQQLAEM-------------------THMPVDYIPQTSNRSINQTIQKKLTIPDG 442

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  +L+ ++           EL     ++   + L   +       +   P  +  
Sbjct: 443 SLDAEDLILMMMLKSSTHAHTFEVELG--YLNDKTHKLLAMLIIDSLHTFQDADPSHLID 500

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           R  ++   +LL +L            +  A  +D  +   +      +   L ++++   
Sbjct: 501 RTDKQEVKDLLTRL-----------VSMPAYDIDYDEAVLKGAIRKVKITTLQKERDAYY 549

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ-IESQE 635
           +Q++Q      ++K   L+    +   ++ + ++ +E
Sbjct: 550 EQLSQAGLNDMSQKV--LMEKYQKCIQELRRYLDEEE 584


>gi|239906705|ref|YP_002953446.1| DNA primase [Desulfovibrio magneticus RS-1]
 gi|239796571|dbj|BAH75560.1| DNA primase [Desulfovibrio magneticus RS-1]
          Length = 576

 Score =  307 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 163/614 (26%), Positives = 264/614 (42%), Gaps = 41/614 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M      +  +     I+ ++G+YV      +          CPFH E   SF+ +  KG
Sbjct: 1   MKNDSGAVAAVKARANIAEIVGRYVTLRPVGS-----RLVGPCPFHQETKGSFNVHPDKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLI 118
           F++CF C   GD + F   + G  F E ++RLAA  GV L     DP+   K++ +   +
Sbjct: 56  FFHCFGCQASGDVIDFFCRINGLEFREGLERLAAEVGVDLGRARSDPRAAAKKRERDACL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + E+A  +F H L     +    YL+ RG+ +  IE F LG +P+    L+  LR +GF
Sbjct: 116 AMHELADRYFRHLLGRDEGRVAREYLERRGVSAEMIERFSLGVSPEGWQGLQTVLRGRGF 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            ++  I AGLL  G N   ++DRFR RL+FPIR   G+VIAFGGR + +G+  KYLNS E
Sbjct: 176 DDDSAIIAGLLTQGKNG-RTWDRFRGRLMFPIRDGGGRVIAFGGRVMGEGDP-KYLNSAE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ KG++LY  + A   + K+ R           +L EGY+DV++L Q G       L
Sbjct: 234 TPIYTKGQHLYGLYEARPVMAKTRRA----------LLSEGYLDVITLHQFGYGEACGVL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA+T  Q + L   +PR+ L FDGD PG +AA +A  ++L     G     V L  GED
Sbjct: 284 GTAMTHEQAKRLSGFAPRVDLVFDGDAPGRKAALRAAQMLLTL---GGACRVVPLPDGED 340

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            DS +   G+  FE  +  +   ++   +   E+ +        E+       +  + D+
Sbjct: 341 VDSLLHAQGRDGFEACLERAEDGLNFCLRMVRESYAPR------EIVAWAGEFLGGLADE 394

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            LR  +   +   L     +     S   +      R  +   P Q   +          
Sbjct: 395 GLRALFIPRVASGLGLAEAELRRLLSRPAKRPAPGPRPGETAAPRQPAWE---------- 444

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLPEEI 537
             + R+A +L  ++  P          A     N + +  ++ L      E +  L E  
Sbjct: 445 -LAPRDAQILSFVVRRPDYAAHLAGAGAGELLGNADARLFFARLAGLVSDEAEARLTEPE 503

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                +      +   D       L     EA   D R+    A+ L ++          
Sbjct: 504 TAFWAKAQMEPPVSDEDAAAFFEELCVFLHEARESDRRRSVMDAIRLAQQRGDSEEALR- 562

Query: 598 IEKQIAQVTAKGEA 611
           +  ++  ++ +G+ 
Sbjct: 563 LLGELQALSGRGDE 576


>gi|125623387|ref|YP_001031870.1| DNA primase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492195|emb|CAL97124.1| DNA primase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070135|gb|ADJ59535.1| DNA primase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 637

 Score =  307 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 155/669 (23%), Positives = 265/669 (39%), Gaps = 84/669 (12%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           + + DL   + I++LI QYV   R   N     Y   CPFH EKTPSF+ N  KGFY+CF
Sbjct: 7   EVVNDLKSKVNIADLISQYVALSRTGKN-----YIGLCPFHGEKTPSFNVNAEKGFYHCF 61

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
            C   GD + FL       FI++V+ LA  AGV L +     E+K      L  +   A 
Sbjct: 62  GCGRSGDAIEFLKEYNQVGFIDAVKELANFAGVTLDI-SNDREEKNNPNAPLYEINNQAA 120

Query: 126 DFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
             ++  L +    +R   YL ERGI    I+ F +G AP+    + ++L  K    ++ +
Sbjct: 121 RLYNILLMSTELGERARDYLAERGITDDVIKRFNIGLAPEENDFIFKNLSNK---FDEEV 177

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILF 242
            A   +   ++   +D F NR++FPI +  GQ I F GR   + +    KY+N+  T +F
Sbjct: 178 MANSGLFHFSNNRVFDAFTNRIMFPITNEYGQTIGFSGRKWQENDDSKAKYINTSATTIF 237

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   L+N   A   + K             + L+EG+MDV++  +AG+ NVV+S+GTAL
Sbjct: 238 DKSYELWNLDKAKPTISK----------RREVYLMEGFMDVIAAHKAGINNVVASMGTAL 287

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE  +R L +++ + VL +DGD  G  A YKA++LV       + V  V +  G DPD +
Sbjct: 288 TEKHVRRLKQIAKKFVLVYDGDSAGQNAIYKALNLV-----GESDVQIVKVPEGLDPDEY 342

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            + YG T    L+                  +      + +    +   I  ++    + 
Sbjct: 343 SKTYGLTGLSALMETGRIQPIEFLIDFLRPENLANLQVQLDFIEQIAPMIAKLQSITAQD 402

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYW-------------------------------- 450
            Y + + + L       + +     R                                  
Sbjct: 403 AYIRKLVEILPDFEYNQVEQAVNLRRENMNITDHSVSDYGASNLVENFADERDYSNLDSA 462

Query: 451 -----------KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
                               +      +    ++     +    E  LL  +I H ++L+
Sbjct: 463 IPIDFEEIFYENNIQPQVADRRNEPAQVFQPTIQVPKLSRSERAEEMLLHRMIYHSSVLK 522

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +  Q+  + R+ +   Q ++  L  + +  +      +   L E       + L  Q+  
Sbjct: 523 KFSQD-ENFRFVHKRYQDIFEKLLLEAMVYEQIDESHLASELSEDQ-----RSLFYQIIS 576

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
             L    +   I D+   +   +           + EE+++Q+A     G  E+   L  
Sbjct: 577 LDLPETASSQEINDLVSIFSNEME--------QIKFEELQQQLATAEKAGNKERMLELTL 628

Query: 620 ILHEVHIQI 628
            +     ++
Sbjct: 629 QIINQKKKL 637


>gi|94986961|ref|YP_594894.1| DNA primase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731210|emb|CAJ54572.1| DNA primase (bacterial type) [Lawsonia intracellularis PHE/MN1-00]
          Length = 576

 Score =  307 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 161/630 (25%), Positives = 273/630 (43%), Gaps = 65/630 (10%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I+++   + I +++ QYV   R  +      + A CPFH E  PSF  ++  GF+YCF C
Sbjct: 9   IQEIKSRLNIVDIVRQYVKLHRNGS-----RWVAPCPFHQETKPSFSVSEEDGFFYCFGC 63

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIRLIEVA 124
              GD  +F S + G SF E++++LA  AGV L        + +K    +  L+++ E  
Sbjct: 64  QASGDIFTFYSQINGLSFRETLEQLAEEAGVILTRFSTFGNESQKVHTNRRQLLKIYEFT 123

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
           T  F ++L +   K    Y+ +RGI     + F+LG++     +L   L++ GF E+  +
Sbjct: 124 TTHFVNNLHSEIGKECREYMKKRGISDEISQYFRLGWSSSDWDTLVRALKRAGFHEQFGV 183

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
           EA L +   ++   YDRFR RL+FPI S  G +IAFGGR +   ++ KY+NS +++L+ K
Sbjct: 184 EAAL-VGIASNGKFYDRFRGRLMFPISSLSGNIIAFGGRIIGDEDTAKYINSSDSLLYKK 242

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
           G  LY    A   +          +S   I++ EGYMDV++L Q G  N V  LGTALT 
Sbjct: 243 GDQLYGLQQARQSI----------SSGKSILITEGYMDVITLHQYGYTNAVGVLGTALTS 292

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
            Q++ +   +  I + FDGD PG +AA +A ++    L  G     VL   GED DS I+
Sbjct: 293 EQVKRISGFTSNIEILFDGDAPGRKAALRACEM---FLTKGLNCKVVLFPEGEDIDSVIK 349

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
            YGK  FEKL  ++   +    +        +  D        ++               
Sbjct: 350 NYGKEFFEKLKNDASEGLQFCIQSLKTRAPRDVIDWVKNFLKQVE--------------- 394

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              I  R   +    +       R +  + +H  +K  +Q    S         + + R+
Sbjct: 395 LPEIVSRFTSILSTGLGLAESELREYVADIKHSIKKKVTQSAAIS-----HSLVQTTPRD 449

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             +L+ L+ +P +L +  ++ A +  +    ++LW  +     +        I Q L  +
Sbjct: 450 KQILMFLVRYPHMLDKLKEQGAHLVLNTTWAKELWGKVEEYSEDN-------IMQYLNSQ 502

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                 K    Q R   +     E    +  Q   +AL +  +   +S   +        
Sbjct: 503 E-----KTFWVQCRTGDVPPLDNEEGEFEAIQTMLEALHMTVQSASVSAALK-------- 549

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               G+       +  L  +   + +   +
Sbjct: 550 ---LGKTSSFEADLKYLRALQETLERTHGE 576


>gi|256545302|ref|ZP_05472666.1| DNA primase [Anaerococcus vaginalis ATCC 51170]
 gi|256398983|gb|EEU12596.1| DNA primase [Anaerococcus vaginalis ATCC 51170]
          Length = 557

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 152/581 (26%), Positives = 262/581 (45%), Gaps = 37/581 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              +   ++L +  I  +IG YVD  +         Y   CPFH+EKTPSF  +D K  +
Sbjct: 4   ISDEKKNEILENSDIVAIIGDYVDLKKSGN-----SYKGLCPFHNEKTPSFTVDDRKQLF 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD +SF+    G S+I+S++ LA  AG+ L   D K  K+ KI      + +
Sbjct: 59  HCFGCGEGGDVVSFIMHKEGLSYIDSMKYLAKKAGIKLD--DTKSSKENKILNRYYDINK 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F+ +L   +  ++  YL  RG  S+ +  F LG+A +S   L  +++ K +  + 
Sbjct: 117 DIMMYFYKNLLTDKAGQI--YLKNRGFRSNIVNTFMLGFAKNSWDDLLNYVKNKDYLLDD 174

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           I   GL I    +   YD++RNRLIFPI +  G+VI FGGR++      KYLNSPE+ +F
Sbjct: 175 IENLGL-IKKSQNGKYYDKYRNRLIFPIINHYGKVIGFGGRSI-DSTMPKYLNSPESQVF 232

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K  NLY          K             IILVEGYMDV+ L   G+   V+SLGT+L
Sbjct: 233 KKRYNLYGLNIFKKQSNK------------DIILVEGYMDVIGLNNQGIDQAVASLGTSL 280

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q +LL + +  + +C+D D+ G++A  +AI++    L  G + N + L +G DPD F
Sbjct: 281 TNDQAKLLKRYAKNVYICYDEDNAGIKATDRAIEI---LLDEGIKPNIISLEKGLDPDDF 337

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++ YG+ AF K + E+  + +  + +  +  + +  +E+ E        ++ IK    R 
Sbjct: 338 VKKYGRDAFIKKMDEASDVYNYKYNKILDLYADSKDNEKFEKLNLFIEFLSSIKSDLTRE 397

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            +   +                 Y   +KK  +++++     +    +    + +     
Sbjct: 398 IFINNVSKLFDIDKSTLKESVLKYNDNYKKTYKNQNKDSFYNKNDFKNFNANQNTIIERK 457

Query: 483 R------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL----FSDFVEQKYF 532
           +      E   L   +N      E  +    +   + +L ++  ++    F    E    
Sbjct: 458 KYSVSTNELEALRLYLNQKDEYDENKEFFDQV-IVDEKLLEIKEYIDKNGFDKISENFSN 516

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
             + I   + ++    + K+L  ++          +    D
Sbjct: 517 DYQFIIDYIKDKSNKIVGKELIEKINLENRKKLLKKLRNRD 557


>gi|115375596|ref|ZP_01462853.1| DNA primase domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823183|ref|YP_003955541.1| DNA primase domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367372|gb|EAU66350.1| DNA primase domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396255|gb|ADO73714.1| DNA primase domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 605

 Score =  306 bits (784), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 161/627 (25%), Positives = 255/627 (40%), Gaps = 50/627 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN P   I++++  + +  LI +YV+  +        +Y   CPFH EKTPSF+    K 
Sbjct: 1   MNIPEHKIEEIIDRVDLVGLISRYVELKKSGR-----EYKGRCPFHQEKTPSFYVIPEKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+C  C   GD +SF+   LG  FIE+V+ LA   GV +        +    +  L  +
Sbjct: 56  FYFCHGCRASGDAVSFVQRYLGKPFIEAVKDLAREVGVDIEAAQDPTAR---ERQQLKEV 112

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            ++A + F   L     +    YL  RG+     + F LG+A  S   L + L + G  E
Sbjct: 113 TDLAAEHFRALLWQDEGRAARAYLATRGVSEETAQAFGLGWAAQSWSLLADKLTRAGMVE 172

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
              ++AGL     N+   YD FR+RL+ PIR+  G+ IAFGGR +   E  KYLNS E+ 
Sbjct: 173 W-GVKAGLAQRRQNADGYYDFFRSRLMVPIRAPEGRPIAFGGRLVGAEEGPKYLNSKESR 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           L++K + LY    A + +++              ILVEGY D + L Q GV++ V+   T
Sbjct: 232 LYNKSETLYGMDQARDEIRR----------RKSAILVEGYFDCIGLHQVGVRHAVALCST 281

Query: 301 ALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           ALT   L+LL    +  +VL  DGD  GL A  +   L    L  G      LL +G+DP
Sbjct: 282 ALTPGHLQLLHRGEARELVLLLDGDQAGLNAVER---LAGPLLAAGASTRVALLPQGDDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+F R  G    E+L+  + PL   L+          + +E+      L+     I    
Sbjct: 339 DTFARREGMEGVERLLQGAQPLTAHLFSSVLPEGGRASFEEKMAAIERLRPMAAQIPMGL 398

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           +R  +  A+       F   + +  G  R             P      ++     +   
Sbjct: 399 VRSAFLNAV----GAHFSLPVGDLEGALRPKAPPKPAPSSAQPPSPSAPAAPRPPPVRPP 454

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +L E   +   +  P ++       A     +  L+     + +     +         
Sbjct: 455 DAL-ETFYVAATLREPRLVARDTFR-ACDELSHTGLR----MVLAHATSGQGAEDALFEA 508

Query: 540 -RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +R     L+QL               A +        + L L +    +  Q   I
Sbjct: 509 PEVVKRALEGALRQL-----------PEAGAPLEQAFLAVCRKLMLRR----IDEQLGYI 553

Query: 599 EKQIAQVTAKGE-AEKTAILISILHEV 624
           EK   Q     +  E+T  L++   E+
Sbjct: 554 EKATKQAPGAYDLTEETRRLLAERIEL 580


>gi|218962086|ref|YP_001741861.1| DNA primase [Candidatus Cloacamonas acidaminovorans]
 gi|167730743|emb|CAO81655.1| DNA primase [Candidatus Cloacamonas acidaminovorans]
          Length = 580

 Score =  306 bits (783), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 160/631 (25%), Positives = 280/631 (44%), Gaps = 68/631 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I  +     I ++I  Y+   R  +N     +   CPFH++  PS + + SK  
Sbjct: 7   KMDQNLIDQIRRANDIVDVIQGYLPLKRVGSN-----FRGLCPFHNDSRPSLYVSQSKQI 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF+C   G+ + F++     +FIE+V++LA  AG+ +P  + K +     +  L+ + 
Sbjct: 62  FKCFACGKAGNVIGFVADFEKLTFIEAVKKLAQRAGIQVPEYE-KTKVVNTKREQLLSVY 120

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           + A +FF  SL  A  + +  YL +R       +  +LGYA +S  +L  HL ++G+S  
Sbjct: 121 KSAAEFFTSSLF-AFGQNVLDYLKKRSFSPETAKELQLGYALNSEKALLNHLLKEGYSVS 179

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
            + ++GL   G+      D F++RL+FPI +S G+VIAFGGR L   E V KY+NSP T 
Sbjct: 180 LLKDSGL--FGNYGGGLTDLFKDRLMFPIHNSLGEVIAFGGRILEPKEGVGKYINSPGTE 237

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           L+ KGK LY  +     + K          +   I+ EGY D L L + G  N V+SLGT
Sbjct: 238 LYTKGKELYGLYKTKYNISK----------AGTAIICEGYFDFLRLYENGFTNSVASLGT 287

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+ LL +   RI++ +DGD  G++AA +A  L L     G  V    L   EDPD
Sbjct: 288 ALTEDQINLLARFCNRIIILYDGDSAGIKAAVRAGLLCLS---RGMEVLIANLPAEEDPD 344

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S I   GK A ++++ +S+PL++ L                AE    + + +  +KD+  
Sbjct: 345 SLILKQGKIAMQEVVDKSIPLINFL------ATDPRPEQPTAERIELILDALRILKDRIK 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D          ++           +  +                    +  
Sbjct: 399 QELLLQEVSDAFGVTVGALNSKLRRSSASVSAESSEQIVP-----------------QYE 441

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           S  E  +L   +      +    +L    ++N   +++++FL +  ++ + + P  +   
Sbjct: 442 SFEERNVLALALKDYESYKLLANDLDSSYFNNKRYRQVYNFLITQNLKSEPWEPAALLDN 501

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +      E L +L                   D++Q   +      R R + R  EE+++
Sbjct: 502 IENNEIKESLAELL----------------FEDLQQMCFEDCLSGLRIRKVQRDLEEMDR 545

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            I++        K   L+    ++ ++  Q+
Sbjct: 546 AISKDP------KNMELLKEKEKLALKYRQM 570


>gi|167755651|ref|ZP_02427778.1| hypothetical protein CLORAM_01166 [Clostridium ramosum DSM 1402]
 gi|237734399|ref|ZP_04564880.1| DNA primase [Mollicutes bacterium D7]
 gi|167704590|gb|EDS19169.1| hypothetical protein CLORAM_01166 [Clostridium ramosum DSM 1402]
 gi|229382629|gb|EEO32720.1| DNA primase [Coprobacillus sp. D7]
          Length = 584

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 146/629 (23%), Positives = 280/629 (44%), Gaps = 51/629 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I ++   + I ++IG Y+  +++  N     Y A CPFHD+  PS   +  +  
Sbjct: 3   RLSSEKINEIRQSVDIVDVIGTYLPLEKKGRN-----YVAICPFHDDSHPSMSISPERQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIR 119
           + CF CH  G+  +FL   L   +IE+V+ +A I  V +   + +   K  ++    L R
Sbjct: 58  FMCFVCHHGGNVFTFLKDYLKIPYIEAVKMVANIGNVDISKYNLESRVKPVDQKLEPLYR 117

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           + + A   ++H L      +   YL+ R I    IE F++GYAP++ + L +   +  F+
Sbjct: 118 MHDEANKIYNHYLNTKLAIQAKEYLNNRKITDEIIETFEIGYAPNN-HVLLKAFEKMNFN 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238
           +  + E+GL+I+  N    YDRF +R++FP+  + G+V+ F GR   + ++  KY+NSPE
Sbjct: 177 KVSMFESGLIIEASNG---YDRFTDRIMFPLHDASGRVVGFSGRIYKQSQNESKYMNSPE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + +F KG  LYN+       +           + +II+ EG+MDV++L +AG++N V+ +
Sbjct: 234 SSIFIKGDTLYNYHRVGEEAR----------QAGYIIITEGFMDVIALYKAGIKNAVAIM 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT   L LL +LS  + LC DGD  G  A  K+ID+    L  G  V  V L    D
Sbjct: 284 GTALTHGHLNLLKRLSKTVYLCLDGDQAGRNATIKSIDI---LLSAGFIVKVVDLPDNLD 340

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD  +   G      +I   L  +D       E  + +  ++R      +   I+ + D 
Sbjct: 341 PDEILDKRGIEELNAVIKRPLSSLDFKMNYYYEMTNMDNYEDRKSYLETIAREISRLDDI 400

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             + +Y Q + ++     +  I +          N     +   ++          +L  
Sbjct: 401 IDQDHYIQQL-EKKSGFSRNIIDQLI--------NQNTAVRIETAEPPKIPKFQNQRLLD 451

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           K    E  LL  ++N   +    Y+  A   + N+  + + S++   + ++      ++ 
Sbjct: 452 KYIRAERDLLYYMMNDKNVAM-MYEAKAGFMF-NDIYRIIASYIIDYYRQEVVLEVADLI 509

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +    + + ++ +            +         Y + +    + + +  +KEE+
Sbjct: 510 SSIEDENLVQNIIEISQL--------GLPKLKDTKAIDDYIETI----KEKTVMVKKEEL 557

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            K +A      + ++ A ++  +  +  +
Sbjct: 558 TKALAD---TFDPKQKAQILKEIIALKDK 583


>gi|332704205|ref|ZP_08424293.1| DNA primase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554354|gb|EGJ51398.1| DNA primase [Desulfovibrio africanus str. Walvis Bay]
          Length = 595

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 162/628 (25%), Positives = 270/628 (42%), Gaps = 46/628 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I+++   + +  ++ +YVD        + G + A CPFH E  PSF  N   G
Sbjct: 1   MGIDQGIIQNIKSRLDMVEIVRRYVDLK-----PMSGRFVAPCPFHQETKPSFSVNPELG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLI 118
           FYYCF C   GD   F + + G  F E+++ LA  AGV L     DP   +K++++   +
Sbjct: 56  FYYCFGCQASGDVFDFYARMNGLEFREALEALAEEAGVSLRDEKPDPLAGRKKQLKKTCL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +  +A D+F   L +   K    YL  R + +  ++ F LG + +    L+  L++KGF
Sbjct: 116 DMHALACDYFRGMLGSPAGKDAREYLARRTLAAEMVDGFSLGCSDEDWQGLQNFLQKKGF 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S  + +EAGLL   D    +YDRFR RLIFPI    G++IAFGGR + K    KYLNS +
Sbjct: 176 SPAQAVEAGLLSRNDAG-RTYDRFRGRLIFPIHDLAGRIIAFGGRII-KDGEPKYLNSSD 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + ++ KG++LY  + A   + KS R          ++L EGY+DVLSL Q G +  V  L
Sbjct: 234 SPIYTKGEHLYGLYQARPAISKSRR----------VLLTEGYVDVLSLHQYGFREAVGVL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT  Q++ L  L   +VL FDGD+ G +AA ++ ++    L  G     VLL  G+D
Sbjct: 284 GTALTADQVKRLGSLCREVVLVFDGDNAGRKAALRSAEM---ILAQGLTCRVVLLPEGQD 340

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            D  +R  G  AF KL+ ++                        E+    +  +  ++D 
Sbjct: 341 ADDLLRQSGAEAFAKLLGQAGDGFTYC------AECVRATGSAREVMDFARRFLRGLRDP 394

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKL 476
             + +Y   + + L     +     +               K   + L    + +  G+ 
Sbjct: 395 AWKAFYLPKLAENLALAESELRQAIASEREERPSGNNPVGVKTQVKNLPGLPIKRPVGQA 454

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                 R+  +L   I  P   Q   ++   +   N   ++LW  +              
Sbjct: 455 RSVEEQRDEQILQFAICFPRYRQLLIEKEMHLGLTNEWSRRLWGTI----ASHSDHDDAY 510

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           ++  L E    ++  +L           AT++    +    +++            R+  
Sbjct: 511 LYSVLDENE-RQIWARLA----------ATSKIKPEEAEGEFKEVCRFLDGANWNERR-A 558

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEV 624
            +   +     +G+  +   L  I  E+
Sbjct: 559 SMVAAMNDARKRGDTAEADRLFHIFREL 586


>gi|157826345|ref|YP_001494065.1| DNA primase [Rickettsia akari str. Hartford]
 gi|157800303|gb|ABV75557.1| DNA primase [Rickettsia akari str. Hartford]
          Length = 595

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 177/633 (27%), Positives = 305/633 (48%), Gaps = 50/633 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    +F + L   I I +++ Q V   R+      G+Y   CPFH EKTPSF  +DSK 
Sbjct: 1   MRVAPEFYEFLRNRINIFDVVRQKVVLTRK-----SGNYVGLCPFHQEKTPSFTVSDSKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F+YCF C   GD + F S + G S+ ES  +LA   G+ +P +  K ++  +   +++ +
Sbjct: 56  FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLATDYGIEIPKLTTKQKEFYEESDEILNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L       +  YL +R I    I+ F +G+AP +     +  R K    
Sbjct: 116 LELANKFFIKQLT----PEILNYLHQRNITETTIKEFSIGFAPRN-NKFEKFFRDKNIDI 170

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            K+ +AGL I    +   Y+ F NR+  PIR+   +++ FGGR L +G   KYLNSPET 
Sbjct: 171 IKLGKAGL-IGKRENGEIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETT 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY    A++   K           +  ILVEGY DV++L QAG    V+SLGT
Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSEAVASLGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ++TE  L  LW+    I+LC DGD+ G++A+ + I+L L  +    +++F+ L RG DPD
Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPRGLDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +  +G     KLI + + L +M+W  E   ++F T +E+A LE +LK+  N I D  L
Sbjct: 339 DAVNKHGADFVAKLIDQRISLSEMIWHIEYSGKNFKTAEEKANLEKNLKDYCNKISDSNL 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y +  +D++ Q                  N   + +K  ++    + +V      + 
Sbjct: 399 KASYYRFFKDQIWQ------------------NLVTKQKKIITKSSNLAPIVSSHGYSEL 440

Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            + E A    L+  P +L+E      + ++ ++N  L++  ++  ++ ++       EI 
Sbjct: 441 EILEHAFCALLVKFPIMLEEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNN-VEASEIT 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +  F ++   L +        S       +D+   +     L+K++ L++ Q+E  
Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNIRLDLLWQW-----LHKKYYLINLQQEYA 554

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                  T   + EK  +    + ++  ++  +
Sbjct: 555 IT--INSTDNHDFEKVLVYKKEILKIANELQVL 585


>gi|152993832|ref|YP_001359553.1| DNA primase DnaG [Sulfurovum sp. NBC37-1]
 gi|151425693|dbj|BAF73196.1| DNA primase DnaG [Sulfurovum sp. NBC37-1]
          Length = 550

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 148/594 (24%), Positives = 247/594 (41%), Gaps = 54/594 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I+ L   I I ++IG +++  +   N     Y A CPFH EKTPSF  + SK  Y
Sbjct: 2   IDNASIESLKNSIDIVDVIGNFIELKKAGAN-----YKANCPFHGEKTPSFVVSPSKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C V GD + F+  L   S+ E++++LA++    L       +  +  +     ++E
Sbjct: 57  HCFGCGVGGDSIKFVMELEKLSYPEAIEKLASMYNFSLNYTKGSSDYSDAKR-----VLE 111

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               ++  +L+N        YL +RGI   +I+ F +GY PD   S+   L        +
Sbjct: 112 TIQTWYVKNLENN--PTAKQYLLDRGIAQSSIQRFGIGYVPDG-NSVINFLNSALLPLPQ 168

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
            +EAG+L  G      Y R   R+ FPI S+ G  + FGGRT+      KY+NSP+T LF
Sbjct: 169 AVEAGILAQG-EGGRYYARLVERITFPIYSTSGGAVGFGGRTI-TNHPAKYINSPQTKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           +K + LY +  A   + K+ +          +I+ EGY+DV+   QAG    V++LGTAL
Sbjct: 227 NKSRLLYGYDLAKESIYKNKK----------LIVCEGYLDVVMFHQAGFTEAVATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P+++L +DGD  G+ AA KA  +     + G     VL   G+DP   
Sbjct: 277 TAEHLPLLRKGDPKVILAYDGDKAGVAAALKAAQM---LSVSGFDGGVVLFPDGQDPADL 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I      A  KL+ E+ PL+  + ++       + P  +       K  ++ +  Q ++ 
Sbjct: 334 IAKGQSEAVAKLLREAKPLIPFVLEKTIYAYDLHDPRAKEAAFGAAKQFLDGL-SQIIKD 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y       L         + +  GR  +  ++ RD                       +
Sbjct: 393 AYIPMAATLLGVS-PALFGKQTQPGRAKESFSQKRD----------------------DV 429

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            + ++L TL+  P ++      +    +       ++S L S   E  + +   +     
Sbjct: 430 AQLSILKTLLEKPELIDSVLDVIDVNMFGG--YAAMFSALISGEKEYPHLMGLAVDDTFQ 487

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                EL   L   +                +    +  L    +  ++ R K 
Sbjct: 488 VMDEAELQGVLRNFLIKHYDMKLKHIVADQTIPFEKKSFLIRKIKTDIIPRLKR 541


>gi|83648910|ref|YP_437345.1| DNA primase [Hahella chejuensis KCTC 2396]
 gi|83636953|gb|ABC32920.1| DNA primase (bacterial type) [Hahella chejuensis KCTC 2396]
          Length = 600

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 162/614 (26%), Positives = 275/614 (44%), Gaps = 36/614 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG-- 60
            P+ F+ DLL  + +++LI + V+  +         Y   CPFHDEK+PSFH  +     
Sbjct: 5   IPQAFVDDLLSRVDLASLIAERVNLKKSGA-----TYQGRCPFHDEKSPSFHVYNENHPA 59

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+C+ C   GD ++F+      SF E+V++LA   GV +P  D   E+K      L   
Sbjct: 60  HYHCYGCGAHGDAINFIKETEHLSFNEAVEQLAKRCGVEVPR-DKVAEQKVSQNKSLYDA 118

Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A   F  +L  + +      YL  RGI     +++ +G+AP  R  L     +    
Sbjct: 119 SSHADSAFRQALGNHPQRGVAQEYLKRRGISPEMADLYGIGFAPAQRQFLSGTSDRSLVK 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
                 + L +  +     +D F+NRL+FPIR +RG+ IAFGGRTL   +  KY+NSPE+
Sbjct: 179 A----LSTLRLVIEKEQDRFDMFQNRLMFPIRDTRGRTIAFGGRTL-GNDRSKYINSPES 233

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHK   LY  + A    +K             +I+VEGY+DV+SL Q GV N V+++G
Sbjct: 234 PIFHKSNVLYGLWEARKQSRKL----------EQLIVVEGYLDVISLAQFGVVNAVAAMG 283

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA  E  L  L   S  IV CFDGD  GL AA KA++ +L     G +V+F++L  GEDP
Sbjct: 284 TATNEDNLSHLLNTSQDIVFCFDGDKAGLAAADKALNNLLPMFQDGYKVSFLILPEGEDP 343

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+F+R  G  AF + I  + PL +  ++  +     +  + +  L    +  +  I    
Sbjct: 344 DTFVRNEGADAFRERIANATPLSEYFFQAMSRGLDLSIAENKGILSTQARAALKVINAPV 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           L+      +  RL +L +                      K       +    +  +   
Sbjct: 404 LKDA----LYQRLNELTRSSRWGDRQGKHGGDWKKGDWKGKKGFSFQNRDEPREEPIPVP 459

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             +   A L   +  P+  +E    L +     ++ + L ++     +++K    E++  
Sbjct: 460 NRIAARACLGLYVK-PSWAKEISNTL-NYEITQDDERAL-TYFLEWLLKEKIESAEDLLY 516

Query: 540 RL-----CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           RL      +R F  L   L+       + +   E+ +V  R+ + ++     +      +
Sbjct: 517 RLTVDPHQQRRFKNLFNSLEHIFGTEEIEAGAQESLLVLKRKYFDRSFDKIHQDLSRDPK 576

Query: 595 KEEIEKQIAQVTAK 608
            +E+ ++   ++++
Sbjct: 577 NKELHEKFRTMSSE 590


>gi|323440460|gb|EGA98172.1| DNA primase [Staphylococcus aureus O11]
 gi|323443234|gb|EGB00852.1| DNA primase [Staphylococcus aureus O46]
          Length = 563

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 142/590 (24%), Positives = 247/590 (41%), Gaps = 33/590 (5%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102
           CPFHDEKTPSF  ++ K   +CF C   G+   F   +   SF+E+V+ L     V + +
Sbjct: 2   CPFHDEKTPSFTVSEDKQICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDI 61

Query: 103 V---DPKIEKKEKIQTDLIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFK 158
                    +       +I + E+  +F++++L K    ++   YL ERG     I+   
Sbjct: 62  EATQSNSNVQIASDDLQMIEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERG 121

Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218
           +G+APDS +   + L++KG+  E   EAGLL   + + + YDRFRNR++FP+++++G+++
Sbjct: 122 IGFAPDSSHFCHDFLQKKGYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIV 181

Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278
            + GRT   G+  KYLNSPET +F K K LYN   A   ++K             I+L+E
Sbjct: 182 GYSGRT-YTGQEPKYLNSPETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLE 230

Query: 279 GYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLV 338
           G+MDV+    AG++NVV+++GT L++  +  + KL+  I L FDGD  G  A  K     
Sbjct: 231 GFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ-- 288

Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398
              L  G  V  + L  G DPD +I  YG  AF   +               ++   +  
Sbjct: 289 -HLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHND 347

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
                    L + I+ +K   L+      +        ++   E          N    D
Sbjct: 348 LSYERYLKELSHDISLMKSSILQQKAINDVAPFFNVSPEQLANEIQ--FNQAPANYYPED 405

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           + G         + +     +    E A L  L+         Y+ +    + N   + +
Sbjct: 406 EYGGYIEPEPIGMAQFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKYNFTNQHFKYV 465

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           +  L   + E   +   +  Q +      E L  L++   +        +    +    Y
Sbjct: 466 FEVLHDFYAENDQYNISDAVQYVNSNELRETLISLEQYSLN--------DEPYENEIDDY 517

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
              +    +        E +  ++ + T  G+ E     +  +   + + 
Sbjct: 518 VNVINENGQET-----IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 562


>gi|317403352|gb|EFV83865.1| DNA primase [Achromobacter xylosoxidans C54]
          Length = 687

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 145/483 (30%), Positives = 239/483 (49%), Gaps = 28/483 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI++LL  + + +++G+YV   +   N +       CPFH+EK+PSF  + +K FY
Sbjct: 2   IPESFIQELLARVDVVDVVGRYVQLRKGGANLL-----GLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQT----D 116
           +CF C   G  ++FL    G SF E+V+ LAA AG+ +P     P+ +++   +      
Sbjct: 57  HCFGCGAHGSAITFLMEHTGASFPEAVRTLAASAGMTVPEENRSPRQQQETARRKAEESR 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             ++++ A   +   L+ +       YL +RG+       F LG++   R+ L +     
Sbjct: 117 HTQVLDAAQAHYLKQLRASPAA--IRYLKQRGLTGEIAAHFGLGWSGTDRHGLSQVF--P 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            + +  ++E+GL+I+ +     YDRFR R++FPIR++RG +I FGGR + KGE  KYLNS
Sbjct: 173 NYEDPTLVESGLVIESEEGRR-YDRFRERIMFPIRNARGSLIGFGGRIIGKGEP-KYLNS 230

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET LF KG+ LY  + A   ++              +I+VEGYMDV+ L Q G+ N V+
Sbjct: 231 PETPLFSKGQELYGLWEARQAIR----------QEGQVIVVEGYMDVVGLAQQGIANAVA 280

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   ++ L + S +++  FDGD  G RAA++A+   L  L     + F+ L   
Sbjct: 281 TLGTATTPDHVKKLLRTSDKVIFSFDGDGAGRRAAWRALQACLPVLRDDIAIRFLFLPSE 340

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPDS++R  G  AF   + E++ L   L        + +  + RA      K  +  I 
Sbjct: 341 HDPDSYVRELGAEAFRACLGEAVALSRFLLDELASRHNMDEAEGRASCLHEAKPLLASIP 400

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +  LR    + +  +L QL  + + +           A  +           ++L  G  
Sbjct: 401 ECALRVQIEREMA-KLVQLTPEEMAQVLAQQPAKPFGAPAKPAPVEGGGGAAAALHDGAP 459

Query: 477 SKK 479
           +  
Sbjct: 460 ADA 462


>gi|167627929|ref|YP_001678429.1| DNA primase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597930|gb|ABZ87928.1| DNA primase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 606

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 161/596 (27%), Positives = 281/596 (47%), Gaps = 28/596 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               +FIK+L+ +  I++++ +YV+  +   N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   KISNNFIKELVANADIADVVSRYVNLTKSGKN-----YKACCPFHNEKTPSFFVNSQKRF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIR 119
           ++CF CH  GD L+F+  +    F+E+V+ LA I G P+   +   E   KE++    I 
Sbjct: 59  FHCFGCHESGDALTFVKKINNLDFVEAVKTLAEIVGKPVEYENYSQEDLHKEQLFNKCIG 118

Query: 120 LIEVATDFFHHSLKNARDKRLHY-YLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + +A  ++  +L N+  K     YL +RGIDS   ++F +GY+ +   ++ +  +    
Sbjct: 119 FLAIAQKYYRWNLGNSASKEKAVGYLKKRGIDSDLAKVFGIGYSSEGWNNVTQLAKSVNV 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           SE+ +I+ GL I  D     YDRFRNR++FPIR+ +G VI +GGR +   + VKY+NSPE
Sbjct: 179 SEDILIDTGLAIKNDKG-NVYDRFRNRIMFPIRNIQGNVIGYGGRVIDDSDGVKYINSPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TI+F K   LY  +          +K     ++  +I+VEGYMDV+ L + G  + V++L
Sbjct: 238 TIVFQKNNILYGLYEYRE-----KKKQYPDLANQSLIVVEGYMDVIGLAKYGFYSAVATL 292

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA ++   ++L++ S  IVLCFDGD  G +A  + I ++L  L    ++  + L  G+D
Sbjct: 293 GTAFSQNHAKILFRESNSIVLCFDGDSAGQKAVVRTIKIILPILDGNKKLRILTLEHGKD 352

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I+ YG   F   + +S  ++D +      N+  +  + ++E+  +LK  +  I + 
Sbjct: 353 PDDYIKEYGLDNFNNSLKKSQSVLDFIINYIINNKDVSKAECKSEIVENLKEFLIDIDEN 412

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    + +++     +         +         D              + K   
Sbjct: 413 IYTESLISTVAEKININANQIKKLLKLGKQRSNIVNLDIDNYK----------YRQKRLS 462

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-- 536
           K  L E  +L  +  + A  +   +E     +  ++   +         E      E   
Sbjct: 463 KSMLLEEVILAEIFVNIADFRMLLKENDFEIFATSKNLDILVKSLKILKEDSSNEIEAVI 522

Query: 537 IHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
           + Q L E    + E   +L  Q  +     +  E     + +  ++  A   + +L
Sbjct: 523 LIQLLAEDYPDYREYFFELLSQGINKARKKSDGEQYCDQILKDLKRIEANSVKEQL 578


>gi|332524403|ref|ZP_08400617.1| DNA primase [Rubrivivax benzoatilyticus JA2]
 gi|332107726|gb|EGJ08950.1| DNA primase [Rubrivivax benzoatilyticus JA2]
          Length = 451

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 154/468 (32%), Positives = 224/468 (47%), Gaps = 30/468 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++GQ+V+  R   N         CPFH EK+PSF  + SK FY
Sbjct: 2   IPAGFLQDLLSRVDIVDVVGQHVELKRGGANL-----MGLCPFHAEKSPSFSVSPSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQTD 116
           YCF C   GD + FL+  LG SF+E+V+ LA   G+ +P      E      K  + +  
Sbjct: 57  YCFGCGASGDAIRFLTEHLGLSFVEAVRDLAQRVGMQVPEEQLSAEELVRRDKLRERRLS 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L  ++  A DF+   LK +   R   YL  RG+       F LGYAP    +L     + 
Sbjct: 117 LGEVLVRANDFYRGQLKTS--PRAVGYLKARGLTGVVAARFGLGYAPPGWRTLAGVFPRY 174

Query: 177 GFSEEKI------IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
                +        EA      D+    YD FR+R++FPIR+  G+VI FGGR L     
Sbjct: 175 DDPLLEEAGLVRHREAADGESEDSERGRYDWFRDRVMFPIRNVAGEVIGFGGRVL-DDSK 233

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KY+NSPET LF KG+ LY  F A   L+               I+VEGYMDV++L Q G
Sbjct: 234 PKYINSPETPLFSKGRELYGLFEARQALR----------ERGCAIVVEGYMDVVALAQHG 283

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V N V++LGTA T   ++ L++ +  IV  FDGD  G RAA +A++  L H      V F
Sbjct: 284 VNNAVATLGTACTAEHVQKLFRFTDAIVFSFDGDAAGRRAAARALEAALPHATDLRSVKF 343

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           + L    DPDS++R  G  AFE+ +  ++PL   L +   E+   ++ + RA L    + 
Sbjct: 344 LFLPPEHDPDSYVRELGVEAFEQALAAAVPLSRQLVELAAEDADLSSAEGRARLAAQARP 403

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
             + + +  L+      I +R +   +              + A    
Sbjct: 404 LWSALPEGSLKDQLLGEIAERARLPREDLARRWGLRAGEATRPAPEAP 451


>gi|89256387|ref|YP_513749.1| DNA primase [Francisella tularensis subsp. holarctica LVS]
 gi|115314833|ref|YP_763556.1| DNA primase [Francisella tularensis subsp. holarctica OSU18]
 gi|156502476|ref|YP_001428541.1| DNA primase [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|254367724|ref|ZP_04983745.1| DNA primase [Francisella tularensis subsp. holarctica 257]
 gi|254369359|ref|ZP_04985371.1| hypothetical protein FTAG_00330 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953810|ref|ZP_06558431.1| DNA primase [Francisella tularensis subsp. holarctica URFT1]
 gi|295312821|ref|ZP_06803553.1| DNA primase [Francisella tularensis subsp. holarctica URFT1]
 gi|89144218|emb|CAJ79488.1| DNA primase [Francisella tularensis subsp. holarctica LVS]
 gi|115129732|gb|ABI82919.1| DNA primase [Francisella tularensis subsp. holarctica OSU18]
 gi|134253535|gb|EBA52629.1| DNA primase [Francisella tularensis subsp. holarctica 257]
 gi|156253079|gb|ABU61585.1| DNA primase [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157122309|gb|EDO66449.1| hypothetical protein FTAG_00330 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 605

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 160/596 (26%), Positives = 276/596 (46%), Gaps = 31/596 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                FIK+L+    I +++ +YV+  +   N     Y  CCPFH+EKTPSF  N  K F
Sbjct: 4   KVSNSFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   GD L+F+  +    FI++V+ LA I G P+       +  +KE++    I 
Sbjct: 59  YHCFGCQASGDALTFVKNINKLEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118

Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +  A  ++  +L N+  K +   YL +RGIDS   + F +GY+ +   ++ E  +    
Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELAKSINI 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            EE +++ GL I  D     YDRFR R++FPIR+ +G VIA+GGR     + VKY+NSPE
Sbjct: 179 PEEILVDTGLAIKNDKG-NLYDRFRGRVMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K   LY  +      +K    D+   S   +++VEGYMDV+ L Q G    V++L
Sbjct: 238 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVGLAQHGFYAAVATL 292

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +    ++L++ +  ++LCFDGD+ G +AA + I ++L  L    ++  + L   +D
Sbjct: 293 GTAFSPNHAKILFRETSSVILCFDGDEAGQKAALRTIKILLPMLDGNKKLKILTLPDKDD 352

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I+ YG   F   +  SL + D +     + +     + +AE+  +LKN +  ++D 
Sbjct: 353 PDDYIKKYGLERFLTALDNSLAVADFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDN 412

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                 +  I D++    +++                 + +K  +  + +   ++ K   
Sbjct: 413 IYSESITATIADKIGIKVEQFKNLL-------------KIRKQTTLNVNRQQNIQQKKLA 459

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-- 536
           K  L E  +L  L  + A  +          +  ++   + +       E      E   
Sbjct: 460 KNLLLEEFVLAELFVNIADFRILQHTNDFEIFATSKNLDILAKSLKILKEDSSNQIEAVI 519

Query: 537 IHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
           + Q L E    + E L +L              +     +    ++      + RL
Sbjct: 520 LIQLLAEDYPDYREYLFELLSYGIRNTQKKYAEDKYQEQMFVMLKRVENSSVKKRL 575


>gi|157804250|ref|YP_001492799.1| DNA primase [Rickettsia canadensis str. McKiel]
 gi|157785513|gb|ABV74014.1| DNA primase [Rickettsia canadensis str. McKiel]
          Length = 594

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 176/633 (27%), Positives = 297/633 (46%), Gaps = 50/633 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    +F + L   I IS++I Q V   ++  N     Y   CPFH EKTPSF  NDSK 
Sbjct: 1   MRVASEFYEFLRNRINISDVIRQKVVLTKKSAN-----YVGLCPFHQEKTPSFTVNDSKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F+YCF C   GD + F S + G S+ ES  +LA    + +P +  K ++  +   +++ +
Sbjct: 56  FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLATDYSIEIPKLTAKQKEFYEESDEILNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L       +  YL  R I    ++ F +G+AP +    +    +     
Sbjct: 116 LELANKFFRTQLT----PEILNYLHGRNITEKTVKEFSIGFAPKNNKFEKFFHDKNIDIV 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +      +    +     Y+ F NR+  PIR+   +++ FGGR L +G   KYLNSPETI
Sbjct: 172 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETI 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY    A++   K           +  ILVEGY DV+ L QAG    V+SLGT
Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NQSILVEGYFDVIVLHQAGFSETVASLGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ++TE  L  LW+    I+LC DGD+ G++A+ + I+L L  +    +++F+ L  G DPD
Sbjct: 279 SITENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPSGLDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +   G   F KLI + + L +M+W  E   +SF T +E+A LE  LKN  + I D  L
Sbjct: 339 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKSFKTAEEKATLEKILKNYCSKISDSDL 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y +  +D++ Q                  N   + +K  ++ L  + ++      + 
Sbjct: 399 RSSYYRFFKDQIWQ------------------NLVIKQKKVKTKSLNLTPIISSHGYSEL 440

Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            + E A    L+  PAIL+E      + ++ ++N  L++  ++  ++ +        EI 
Sbjct: 441 EMLEHAFCALLVRFPAILEEKDIKDFILNLNFNNKSLEEFRNWYLNEIIANN-VAASEIT 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +  F ++   L +        S       +D+   +     L+K++ L++ Q+E  
Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNVRIDLLWQW-----LHKKYYLINLQQEY- 553

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
              I   T   + EK  +    + ++  ++  +
Sbjct: 554 -MYIINSTDNHDFEKVLLYKKEILKIANELQVL 585


>gi|309806595|ref|ZP_07700592.1| putative DNA primase [Lactobacillus iners LactinV 03V1-b]
 gi|308167015|gb|EFO69197.1| putative DNA primase [Lactobacillus iners LactinV 03V1-b]
          Length = 562

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 153/591 (25%), Positives = 256/591 (43%), Gaps = 36/591 (6%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102
           CPFH EKTPSF  ++SK F+ CF C   G+   FL      SF ESV  +A IA + +P 
Sbjct: 2   CPFHQEKTPSFTVSESKQFFKCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPG 61

Query: 103 VDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGY 161
                      +  + ++   AT+F+ H L   +  +    Y+ ER + S  I  FK+GY
Sbjct: 62  EYNNDAIY--KKNPIKQIYSDATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGY 119

Query: 162 APDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFG 221
           AP +   L   L+QK +S++ + ++GL I         DRFR+RL+FP+    G  IAF 
Sbjct: 120 APKADNILYIFLKQKNYSQDLLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFS 178

Query: 222 GRTLSKGESV-KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGY 280
           GR +S    + KY+NSPET LF K K LY+F  A + +          N+ + +IL EGY
Sbjct: 179 GRRISNDSQIAKYVNSPETPLFTKSKLLYHFSEAKHAV----------NAENHLILYEGY 228

Query: 281 MDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340
           MDV++  + G++  V+S+GT+LT  Q+ +L +++P I++ +DGDDPG  A  +AI L   
Sbjct: 229 MDVIAAYKCGIKTGVASMGTSLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL--- 285

Query: 341 HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE 400
              P   +  V L    DPD +++ YG   +   +  +    + L +R  +  +     +
Sbjct: 286 FNYPNMNLGIVSLPENLDPDEYVKKYGPEKYVNEVKAATTSTEFLLQRMAKKYNLFNDRD 345

Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHR 457
           + +        I    D      Y Q +  +LQ   +          R  +    + +  
Sbjct: 346 KLDFINESIALIAKNDDPIEIDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQI 405

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
               P+  +    L     S      +  LL   I++         +     + N   Q+
Sbjct: 406 QALYPADEVTPKQLDNVHDSSASFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQ 463

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L     S   +            + +      L+ +   +    +    +E  I D    
Sbjct: 464 LADLWLSYLEKNPNPNISGFADFIPKD-----LQSIIVNMELTDMPYTFSEGEIDD---- 514

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             Q  +L K+  +L  + + +  QI     K +++    L   + E+  +I
Sbjct: 515 --QIASLIKQKTIL--EIQRLYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 561


>gi|313207345|ref|YP_004046522.1| DNA primase [Riemerella anatipestifer DSM 15868]
 gi|312446661|gb|ADQ83016.1| DNA primase [Riemerella anatipestifer DSM 15868]
 gi|325335196|gb|ADZ11470.1| DNA primase (bacterial type) [Riemerella anatipestifer RA-GD]
          Length = 640

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 145/659 (22%), Positives = 274/659 (41%), Gaps = 54/659 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I  +   I +  ++G+YV   R  +N     Y    PF DEKTPSF  + SK  +
Sbjct: 2   ITKETIDKIFSAIRVEEIVGEYVQLKRAGSN-----YKGLSPFVDEKTPSFIVSPSKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDLI 118
             FS    G  +SFL  +   S+ E+++  A   G+ +     ++ ++EK     +  L 
Sbjct: 57  KDFSSGKGGTAISFLMEIENFSYPEALRFAAKKYGIEIEEHQRELTEEEKTAQTEKDLLY 116

Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           ++ EVA  ++   +    + +     Y  ER +    I+ F+LGY+P  + +  E+   K
Sbjct: 117 KIHEVANHYYQKQIWETEEGKSIGLSYFKERELREDIIKKFQLGYSPIQKNAFTEYAISK 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235
           G+++E + ++GL I  D +    DRFR R+IFPI S  G+V+ FG R L    ++ KYLN
Sbjct: 177 GYTKEILEKSGLSIFTDYAPDGLDRFRERVIFPIHSFSGRVLGFGARILKSNVKTAKYLN 236

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET ++HK   LY    +   + K           +  +LVEGYMDV++L QAG+++VV
Sbjct: 237 SPETEIYHKSNVLYGLNQSKQAISKQ----------NLCLLVEGYMDVVALHQAGIEHVV 286

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GTALT  Q++L+ +L+  + + FDGD  G++A++++ID++L     G  +  +L   
Sbjct: 287 ASSGTALTTEQIKLIKRLTENVTILFDGDAAGIKASFRSIDMLLSE---GMNIRILLFPD 343

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R + K   E  I  +                 + P +++E    +   +  +
Sbjct: 344 GDDPDSFSRKHPKEFVEDFIQNNAQDFINFKAEILLKDVEHDPIKKSEAIRDIVKSVAFV 403

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEH--SGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +   +  Y + I ++     Q    E       +  +     +    P  +L   +   
Sbjct: 404 GNVLKQEIYLKEISNKFGLSEQSLFNELGIQQQVKEQQHLTPKKATPQPQPKLEVITSDF 463

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQ------------------ELADIRYDNNEL 515
            K +      E  ++  ++ +   + E                     E  +    +   
Sbjct: 464 TKANTALLYLEEQMVELMLKYGDYIIEMKDAEDKVYQTTVIEEVICRMEEDNCEIQSETN 523

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL-DRQVRDAGLWSATTEANIVDV 574
           +K+ + +       +          + E    ++   L +                    
Sbjct: 524 KKIINEIKQGIQTNELRSERFFITLMNEEITNKVANALVEPYQLSDWKKHNIYLLPKEKS 583

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                       +   + +  E+++          EAE    +   + ++ +  + I+ 
Sbjct: 584 INKLVADTIYRYKREYIMKMIEDLKN--------TEAEDKTEIYQKIIKLTMLKNTIDQ 634


>gi|241668481|ref|ZP_04756059.1| DNA primase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877015|ref|ZP_05249725.1| DNA primase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843036|gb|EET21450.1| DNA primase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 606

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 161/596 (27%), Positives = 280/596 (46%), Gaps = 28/596 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               +FIK+L+ +  I++++ +YV+  +   N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   KISNNFIKELVANADIADVVSRYVNLTKSGKN-----YKACCPFHNEKTPSFFVNSQKRF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIR 119
           ++CF CH  GD L+F+  +    F+E+V+ LA I G P+   +   E   KE++    I 
Sbjct: 59  FHCFGCHESGDALTFVKKINNLDFVEAVKTLAEIVGKPVEYENYSQEDLHKEQLFNKCIG 118

Query: 120 LIEVATDFFHHSLKNARDKRLHY-YLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + +A  ++  +L N+  K     YL +RGIDS   ++F +GY+ +   ++ +  +    
Sbjct: 119 FLAIAQKYYRWNLGNSDSKEKAVSYLKKRGIDSDLAKVFGIGYSSEGWNNVTQLAKSVNV 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           SE+ +I+ GL I  D     YDRFRNR++FPIR+ +G VI +GGR +   + VKY+NSPE
Sbjct: 179 SEDILIDTGLAIKNDKG-NVYDRFRNRIMFPIRNIQGNVIGYGGRVIDDSDGVKYINSPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TI+F K   LY  +          +K     ++  +I+VEGYMDV+ L + G  + V++L
Sbjct: 238 TIVFQKNNILYGLYEYRE-----KKKQYPDLANQSLIVVEGYMDVIGLAKYGFYSAVATL 292

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA ++   ++L++ S  IVLCFDGD  G +A  + I ++L  L    ++  + L  G+D
Sbjct: 293 GTAFSQNHAKILFRESNSIVLCFDGDSAGQKAVVRTIKIILPILDGNKKLRILTLEHGKD 352

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I+ YG   F   + +S  ++D +      N+  +  + ++E+  +LK  +  I + 
Sbjct: 353 PDDYIKEYGLDNFNNSLKKSQSVLDFIINYIINNKDVSKAECKSEIVENLKEFLIDIDEN 412

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    + +++     +         +         D              + K   
Sbjct: 413 IYTESLISTVAEKININTNQIKKLLKLGKQKSNIVNLDIDNYK----------YRQKRLS 462

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-- 536
           K  L E  +L  +  + A  +   +E     +  ++   +         E      E   
Sbjct: 463 KSMLLEEVILAEIFVNIADFRMLLKENDFEIFATSKNLDILVKSLKILKEDSSNEIEAVI 522

Query: 537 IHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
           + Q L E    + E   +L  Q        +  E     + +  ++  A   + +L
Sbjct: 523 LIQLLAEDYPDYREYFFELLSQGISKARKKSDGEQYCEQILKDLKRIEANSVKEQL 578


>gi|190570640|ref|YP_001974998.1| DNA primase [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|213019109|ref|ZP_03334916.1| DNA primase [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|190356912|emb|CAQ54290.1| DNA primase [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212995218|gb|EEB55859.1| DNA primase [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 577

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 166/634 (26%), Positives = 280/634 (44%), Gaps = 75/634 (11%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I  +   + +S+++G+ V   +R        +   CPFH+EKTPSF  ++ KG YYCF C
Sbjct: 4   IDIIKSKLLLSDIVGKKVRLIKRG-----DSFVGLCPFHNEKTPSFSVSNVKGLYYCFGC 58

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
              GD   F+S   G SF E+++ LA++AGV LP          K    L   + +A  +
Sbjct: 59  SAHGDAFEFISQTEGLSFKEALENLASVAGVELPKNLSFA----KENDKLFSALNLAASW 114

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
           F        ++ +  YL +R I    I+ F++GYAP S   L+E+L   G  +E +I+ G
Sbjct: 115 FAQK-----NRGVMAYLRQRKISLKIIDKFRIGYAPSS--GLKEYLNSSGIKDEILIDVG 167

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247
           L+        S D F +RLIFPI +  G+VI FGGR L+  +  KYLNSPE+ LF K +N
Sbjct: 168 LINK-----NSRDYFYDRLIFPIHNITGKVIGFGGRALNSEQQPKYLNSPESQLFKKREN 222

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           LY    AL+ ++K             + +VEGYMDV++L QAG+ N V+ LGTA++  Q+
Sbjct: 223 LYGLNFALSEIRKK----------QHLFVVEGYMDVIALHQAGISNTVAPLGTAISAEQI 272

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR--C 365
           + LWK +  I +C DGD  G  AA +  +LVL  L PG  + FV L   +DP        
Sbjct: 273 KNLWKFAKEISICMDGDSAGRHAAIRIAELVLPILEPGYTLKFVTLPNNKDPYDICNELE 332

Query: 366 YGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           Y           S  L              +N     P++ + LE      +N I +  +
Sbjct: 333 YKTEDVLSAFNHSTELHSEYLWHHIIGRNLQNYEKFAPEKYSILEHKFMKYVNAIGNSSI 392

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R YY     +++ +L + +         +  K  +       S  L+++           
Sbjct: 393 RRYYRDYFYNKVSELRRNFKKLI-----FNSKATKGEYLYNKSPELIEA----------- 436

Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              +A +L   +  P IL     +++ +   + N E++KL   + +    +  F  E + 
Sbjct: 437 EQNQAIILRIAVEFPEILNRPIFFEQFSHFEFTN-EMKKLQQCVINMVTNESNFNKEILL 495

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           Q             + + + +      +  +        +   +        L ++   +
Sbjct: 496 QE----------SSVIKFIFEKTSVLNSQLSEKRSAETVWNNIV--------LRKELNVL 537

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +++  +    G  +    LI  + ++   I +++
Sbjct: 538 QEEKIKARLGGNFDLEERLIEQIKQIEDSIQEMQ 571


>gi|258406015|ref|YP_003198757.1| DNA primase [Desulfohalobium retbaense DSM 5692]
 gi|257798242|gb|ACV69179.1| DNA primase [Desulfohalobium retbaense DSM 5692]
          Length = 573

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 160/624 (25%), Positives = 264/624 (42%), Gaps = 60/624 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D I+ +   + I +++ +YVD  +         +   CPFH E  PS   +  KGF
Sbjct: 3   RRSGDTIEAIKARLNIVDIVRRYVDLRQVG-----DRWAGVCPFHQETKPSLSVHPEKGF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKIQTDLIRL 120
           +YCF C   GD   F   + G  F ++++ LA  AGV L    DP+  ++++ +   + +
Sbjct: 58  FYCFGCQASGDLFDFYCMINGLEFRQALEELAREAGVTLNDRPDPQAAQRQQERRACLEM 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             +A  FF   L++A  ++   YL+ RG+D    + F LGYAP+   +L  HL+Q G+S 
Sbjct: 118 HSLAQSFFQRQLESAEARQAREYLEARGVDETMQDYFGLGYAPEQWQALCGHLQQSGYSP 177

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +K + AGLL         YDRFR R+ FPI    G+VIAFGGR + +GE  KYLNS ++ 
Sbjct: 178 QKGVTAGLLSQNKKG-RIYDRFRGRVTFPIHDLGGKVIAFGGRVIGEGEP-KYLNSSDSP 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++ KG +LY  + A   +            S  ++L EGY DV++L + G  N    LGT
Sbjct: 236 IYKKGAHLYGLYQARQAV----------TQSKEVLLTEGYADVIALVRYGFTNACGVLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE Q+R L  L+ R+ L +DGD  G +AA ++ ++    L  G +   V L  GED D
Sbjct: 286 ALTEEQVRRLAGLARRVTLVYDGDRAGRQAASRSAEM---LLRQGVQCRVVSLPDGEDVD 342

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S ++  G   F++ + E+   +    +   E+          E+       +N + D   
Sbjct: 343 SLLQGQGAAGFQRYVREAEEGLSFCLRVLRESG------VAREILRWATEFLNGLHDSTW 396

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           + Y+   +   L+    +      G           +  +                   P
Sbjct: 397 QAYFLPRVAAGLELSETELRRAVDGNREAKTSGGAQQRGQR-------------LERTSP 443

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             R+  LL   I+ PA  +       D        ++LW  +       + F  EE+   
Sbjct: 444 GQRDRELLHFAISFPAYTKRLDVLGLDHALATERGRQLWRKI-------QAFSREELLLH 496

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L E      ++                       R  ++       R R    +  E+  
Sbjct: 497 LDEGEKRFYIQS------------ELDPIPAERERLVWEGIEQFLHRTRQ-DEKLHEMRT 543

Query: 601 QIAQVTAKGEAEKTAILISILHEV 624
            + +    G+AE+   L+    ++
Sbjct: 544 ALKKAQEAGDAEEMDRLLQAYTDM 567


>gi|118602331|ref|YP_903546.1| DNA primase [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567270|gb|ABL02075.1| DNA primase [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 593

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 156/642 (24%), Positives = 272/642 (42%), Gaps = 69/642 (10%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           DF  DL   + I ++I + V   +        DY ACCPFH EKTPSF  +  K  Y CF
Sbjct: 7   DFKDDLPNCVDIVDIINRRVPLKKVGK-----DYKACCPFHHEKTPSFSVSVEKQMYKCF 61

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
            C   G  ++F+        +E+++ ++   G+ + V D  ++  +        L++   
Sbjct: 62  GCDEGGGVINFVMKFDNLGLVEAIETISGELGISV-VYDENVKSVDSRLARYRNLMQRVR 120

Query: 126 DFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
            F+   LK +  K       + RGI     + F+LG+AP S   L E  +      +   
Sbjct: 121 QFYIQQLKQSPAKDKAVNYAKNRGISGKIAKYFELGFAPPSSNLLSEFEQNDQNIADLKT 180

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
              L  D   S   YD F++RL+FPI +++G +IAFGGRT      VKYLNSPET +F K
Sbjct: 181 MGLLCDDQYRSGQYYDFFKDRLMFPIHNAKGNIIAFGGRTFDNNTKVKYLNSPETPIFSK 240

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            K LY  + A  Y +          S  +I++VEGYMDV++L Q G+  VV++LGTA T 
Sbjct: 241 SKELYGLYHARKYSR----------SIDYILVVEGYMDVIALHQVGISQVVATLGTATTI 290

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             L +L +++  I+ CFDGD+ G +AA++A+++ L  +  G  V F+ L  GEDPDS ++
Sbjct: 291 EHLNILSRVTNTIIFCFDGDNAGKKAAWRALNVTLPVIKTGITVKFLFLPDGEDPDSLVK 350

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                 F   I  + PL   L+        F+T + +      +   +  I  +  +   
Sbjct: 351 KESSKVFVTRIENAQPLSQFLFSHIKAELDFSTIEGKTLFLEKVSTLLRKINYKIYQQQL 410

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--------SSLVKGKL 476
            + +   + Q  ++            + N     +      +           +L+   +
Sbjct: 411 LEGLAGEVNQSIEQIKYILERQDTPVQINTFDIPKNYEEPPISDFYDSDDNYKALISAPI 470

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
               SL    ++  L+N+P+++ E  +             ++                 +
Sbjct: 471 KSSNSLI-DQMIGLLLNYPSMIDETVEL------------RVRK-----------INDAD 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR--Q 594
           + Q L           L   +    +     +          QQ L LY + ++L     
Sbjct: 507 VLQNLANSAL------LQEDITLEDIIKPFPQK---------QQLLDLYNKKKVLKNYDY 551

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISIL---HEVHIQIHQIES 633
           K+E    + ++  K + E   ++ + +     +  +  +++S
Sbjct: 552 KDEFLDALLKIEKKQKNENALLITNEIEYTKSLQARKGKLKS 593


>gi|116511351|ref|YP_808567.1| DNA primase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107005|gb|ABJ72145.1| DNA primase [Lactococcus lactis subsp. cremoris SK11]
          Length = 637

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 154/669 (23%), Positives = 265/669 (39%), Gaps = 84/669 (12%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           + + DL   + I++LI QYV   R   N     Y   CPFH EKTPSF+ N  KGFY+CF
Sbjct: 7   EVVNDLKSKVNIADLILQYVALSRTGKN-----YIGLCPFHGEKTPSFNVNAEKGFYHCF 61

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
            C   GD + FL       FI++V+ LA  AGV L +     E+K      L  +   A 
Sbjct: 62  GCGRSGDAIEFLKEYNQVGFIDAVKELANFAGVTLDI-SNDREEKNNPNAPLYEINNQAA 120

Query: 126 DFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
             ++  L +    +R   YL ERGI    I+ F +G AP+    + ++L  K    ++ +
Sbjct: 121 RLYNILLMSTELGERARDYLAERGITDDVIKRFNIGLAPEENDFIFKNLSNK---FDEEV 177

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILF 242
            A   +   ++   +D F NR++FPI +  GQ I F GR   + +    KY+N+  T +F
Sbjct: 178 MANSGLFHFSNNRVFDAFTNRIMFPITNEYGQTIGFSGRKWQENDDSKAKYINTSATTIF 237

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   L+N   A   + K             + L+EG+MDV++  +AG+ NVV+S+GTAL
Sbjct: 238 DKSYELWNLDKAKPTISK----------RREVYLMEGFMDVIAAHKAGINNVVASMGTAL 287

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE  +R L +++ + VL +DGD  G  A YKA++LV       + V  V +  G DPD +
Sbjct: 288 TEKHVRRLKQIAKKFVLVYDGDSAGQNAIYKALNLV-----GESDVQIVKVPEGLDPDEY 342

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            + YG T    L+                  +      + +    +   I  ++    + 
Sbjct: 343 SKTYGLTGLSALMETGRIQPIEFLIDFLRPENLANLQVQLDFIEQIAPMIAKLQSITAQD 402

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYW-------------------------------- 450
            Y + + + L       + +     R                                  
Sbjct: 403 AYIRKLVEILPDFEYNQVEQAVNLRRENMNITDHSVSDYGASNLVENFADKRDYSNLDSA 462

Query: 451 -----------KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
                               +      +    ++     +    E  LL  +I H ++L+
Sbjct: 463 IPIDFEEIFYENNIQPQVADRRNEPAQVFQPTIQVPKLSRSERAEEMLLHRMIYHSSVLK 522

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +  Q+  + R+ +   Q ++  +  + +  +      +   L E       + L  Q+  
Sbjct: 523 KFSQD-DNFRFVHKRYQDIFEKILLEAMVYEQIDESHLASELSEDQ-----RSLFYQIIS 576

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
             L    +   I D+   +   +           + EE+++Q+A     G  E+   L  
Sbjct: 577 LDLPETASSQEINDLVSIFSNEME--------QIKFEELQQQLATAEKAGNKERMLELTL 628

Query: 620 ILHEVHIQI 628
            +     ++
Sbjct: 629 QIINQKKKL 637


>gi|56708123|ref|YP_170019.1| DNA primase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670594|ref|YP_667151.1| DNA primase [Francisella tularensis subsp. tularensis FSC198]
 gi|224457214|ref|ZP_03665687.1| DNA primase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254370609|ref|ZP_04986614.1| DNA primase [Francisella tularensis subsp. tularensis FSC033]
 gi|254874923|ref|ZP_05247633.1| DNA primase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56604615|emb|CAG45669.1| DNA primase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320927|emb|CAL09052.1| DNA primase [Francisella tularensis subsp. tularensis FSC198]
 gi|151568852|gb|EDN34506.1| DNA primase [Francisella tularensis subsp. tularensis FSC033]
 gi|254840922|gb|EET19358.1| DNA primase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159324|gb|ADA78715.1| DNA primase [Francisella tularensis subsp. tularensis NE061598]
          Length = 605

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 159/596 (26%), Positives = 276/596 (46%), Gaps = 31/596 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                FIK+L+    I +++ +YV+  +   N     Y  CCPFH+EKTPSF  N  K F
Sbjct: 4   KVSNSFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   GD L+F+  +    FI++V+ LA I G P+       +  +KE++    I 
Sbjct: 59  YHCFGCQASGDALTFVKNINKLEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118

Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +  A  ++  +L N+  K +   YL +RGIDS   + F +GY+ +   ++ E ++    
Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELVKSINI 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            EE +++ GL I  D     YDRFR R++FPIR+ +G VIA+GGR     + VKY+NSPE
Sbjct: 179 PEEILVDTGLAIKNDKG-NLYDRFRGRVMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K   LY  +      +K    D+   S   +++VEGYMDV+ L Q G    V++L
Sbjct: 238 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVGLAQHGFYAAVATL 292

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +    ++L++ +  ++LCFDGD+ G +AA + I ++L  L    ++  + L   +D
Sbjct: 293 GTAFSPNHAKILFRETSSVILCFDGDEAGQKAALRTIKILLPMLDGNKKLKILTLPDKDD 352

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I+ YG   F   +  SL + D +     + +     + +AE+  +LKN +  ++D 
Sbjct: 353 PDDYIKKYGLERFLTALDNSLAVADFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDN 412

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                 +  I D++    +++                 + +K  +  + +   ++ K   
Sbjct: 413 IYSESITATIADKIGIKVEQFKNLL-------------KIRKQTTLNVNRQQNIQQKKLA 459

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-- 536
           K  L E  +L  L  + A  +          +  ++   + +       E      E   
Sbjct: 460 KNLLLEEFVLAELFVNIADFRILQHTNDFEIFATSKNLDILAKSLKILKEDSSNQIEAVI 519

Query: 537 IHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
           + Q L E    + E   +L              +     +    ++      + RL
Sbjct: 520 LIQLLAEDYPDYREYFFELLSYGIRNTQKKYAEDKYQEQMFVMLKRVENSSVKKRL 575


>gi|317484460|ref|ZP_07943372.1| DNA primase [Bilophila wadsworthia 3_1_6]
 gi|316924284|gb|EFV45458.1| DNA primase [Bilophila wadsworthia 3_1_6]
          Length = 580

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 160/623 (25%), Positives = 258/623 (41%), Gaps = 67/623 (10%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I+++   + + ++  +YVD  R         + A CPFH E  PSF  N+ +GF+YCF C
Sbjct: 8   IQEIKARLNLVDIARRYVDLKRNG-----PRWVAPCPFHQETKPSFSINEEEGFFYCFGC 62

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-----IEKKEKIQTDLIRLIE 122
              GD   F   + G  F E++++LA  AGV L     K       +    +  L+++ E
Sbjct: 63  QASGDLFDFYGQINGLDFKETLEQLAEEAGVTLERGPQKHDGQPAGQTMSKRRQLLKIHE 122

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           +A   F  +L          Y+  RGI     ++F LG++     SL E LR+ GFSE  
Sbjct: 123 IAAAHFTENLSGRDGAECRDYMARRGISEEVAKLFGLGWSRRDWQSLAEVLRRAGFSESM 182

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
            +EA LL        +YDRFR RL+FPIRS  G VIAFGGR ++  +  KY+NS ++ L+
Sbjct: 183 GVEAALLGKS-ERGRAYDRFRGRLMFPIRSLSGNVIAFGGRIIANEDEAKYINSSDSQLY 241

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG++LY    A   +           +    +L EGYMDV++L Q G  + V  LGTA 
Sbjct: 242 KKGEHLYGLQQARRAIA----------TGKPAMLTEGYMDVVTLHQFGYSSAVGVLGTAF 291

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q++ +   +  + L FDGD PG +AA +A ++    L  G     VL   GED DS 
Sbjct: 292 TPEQVKRISGFTSHVELLFDGDGPGRKAALRACEM---LLTRGLSCKVVLFPEGEDIDSL 348

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +R  G   FE L   +   +    +   +       D   E           ++  +L  
Sbjct: 349 LRTQGTDIFEDLRRNAPEGMAFCVRCLRDMAPREAVDWAREFLR-------QVELPELVS 401

Query: 423 YYSQAIRDRLQQLFQKYITEH--SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            ++  +   L     +       S   R   +NA  ++ + P                + 
Sbjct: 402 RFASTLSTGLGLAESELRERIIESRGARALPRNAGGQETQPPV---------------RT 446

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           + R+  ++   + +P+ L    +  A +       + LW  L                  
Sbjct: 447 NPRDREIMTFAVRYPSSLPRLRELGAHLVLSAAWARDLWQKLEEY--------------- 491

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                  E+++ LD + +   +   T +   +D  +G   A+        L+ Q   +  
Sbjct: 492 ----PVDEVVQHLDPREKRFWIRCRTGDVPPLDNEEGEFGAIRTMLDTLHLTAQSASVSA 547

Query: 601 QIAQVTAKGEAEKTAILISILHE 623
            + Q    G  E     +  L E
Sbjct: 548 ALRQGAGAGNFEADLEYLRALQE 570


>gi|169334165|ref|ZP_02861358.1| hypothetical protein ANASTE_00559 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258882|gb|EDS72848.1| hypothetical protein ANASTE_00559 [Anaerofustis stercorihominis DSM
           17244]
          Length = 607

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 149/645 (23%), Positives = 280/645 (43%), Gaps = 51/645 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           + +DFI+ L+    I  +I QYV   R  T      Y A CPFH EKTPSF      G Y
Sbjct: 5   FKKDFIRRLVDDADIVGIINQYVPLQRSGT-----RYKARCPFHTEKTPSFVVTPEMGRY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP-------KIEKKEKIQT 115
           +CF C+  GD L FL  +    F  +V+ LA + GV +   +        +       + 
Sbjct: 60  HCFGCNANGDVLDFLMEMNKLDFSGAVELLADMEGVNVQYEENGNYTRRSENAISYNEKQ 119

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           +L   I+ + ++++ +L  +       YL +RG+    I+ F LGY+ +   +L  +L +
Sbjct: 120 ELYNCIKDSANYYYKNLMKS--GVPLKYLLDRGLKKETIKKFGLGYSINEFDNLYNYLVK 177

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYL 234
           +       +    L+  ++    YD FR+R++FPI+   G++IAFGGR       + KYL
Sbjct: 178 EKKYSVNTLIKAGLVRTNDKRGVYDYFRDRIMFPIQDVNGKLIAFGGRIFKNVKNAPKYL 237

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NSPET++F K   LYN   A   L           S   +ILVEGYMDV+SL   G+ N 
Sbjct: 238 NSPETLVFKKNSTLYNLNNARKEL-----------SEKPLILVEGYMDVISLVNNGINNA 286

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V++LGTA      +L+ + +  +V+ +D D+ GL A  KA ++             V L 
Sbjct: 287 VATLGTAFNINHAKLINRYTKNVVIMYDSDNAGLNATIKAGEI---LESANIYPKVVRLP 343

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
           +G+DPDS+I       F  L+   +  ++   K   +N +     E+ +        I  
Sbjct: 344 KGDDPDSYILNNSIEKFNNLVENGVDSIEFRIKLLEDNHNLLDNWEKVDFIKKACVIIGK 403

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           + D   + +Y + + +R +        E +        +     +    Q +      K 
Sbjct: 404 VDDDVRKEFYIKYLHERTKAEISTIEKEVNTNSFITPNHLEEGKKDDKEQNIR-----KH 458

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           ++ +K    +  +L  +I++   + +  +  L +     ++ +K++  + S     K   
Sbjct: 459 QIKQKIISAQEMILKYMIDNALDIDKIKEVNLDEDILVGDDYKKIYEKIVSCINLGKKVD 518

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             E+        + ++L         + + S     +  D+ Q  +  +        +++
Sbjct: 519 FIELFD------YNDILA-----TTMSRIVSLDQNIDSDDLNQAKKTLMVNN-----INK 562

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           +  +++  I  +    + E   +LI+  +++  ++ + ++   +I
Sbjct: 563 KITKVKLAIRDIQESEDKEMLDVLIAEFYKLKSELLKAKNGGTLI 607


>gi|94986010|ref|YP_605374.1| DNA primase [Deinococcus geothermalis DSM 11300]
 gi|94556291|gb|ABF46205.1| DNA primase [Deinococcus geothermalis DSM 11300]
          Length = 587

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 160/631 (25%), Positives = 268/631 (42%), Gaps = 54/631 (8%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           +D+   + I+++IG++V           G     CPFH EK+PSF  +  +G++YCF C 
Sbjct: 5   EDVRARLNIADVIGEHVRLTPAGK----GRLKGLCPFHQEKSPSFQVDTEQGYFYCFGCK 60

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
             GD  SF+  +   SF +++++LA   GV +     +   ++     L  +   A  +F
Sbjct: 61  AGGDVFSFVQRIENLSFGDALRKLAERVGVQVEARYGERSSRD-----LYDVNAFALAYF 115

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
              L          YL +RG+    IE F+LGYAP+    L    R +  SE +++EAGL
Sbjct: 116 REHLPGP----ALDYLRQRGLTDQTIEAFELGYAPEGWDGLLRRARARNLSERQLLEAGL 171

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
           LI+   S   YDRFR R++FPIR   G+++ FGGR L      KYLN+PET  F KG+ L
Sbjct: 172 LIENPESGRVYDRFRGRVMFPIRDHLGRLVGFGGRVL-DDSKPKYLNTPETDAFKKGELL 230

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           Y    A              ++ + +I+VEGYMDV++L Q G    V+SLGTALT     
Sbjct: 231 YGLDKAR----------AGLSNGAELIVVEGYMDVIALHQHGFTGAVASLGTALTAEHAA 280

Query: 309 LL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
           LL    + R+VL FD D+ GL+A    +D VL        V    +  G+DP   +    
Sbjct: 281 LLERLGAQRLVLMFDRDEAGLKATLAGLDQVLGAK---FHVRATSVPSGKDPADALLAGD 337

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
                  +   L       +   E    +T + +  + + L   + ++ D          
Sbjct: 338 LQGIRNALAGGLDEARYRVQAAVEAHGIDTSEGKRRVLLALLPRMQNL-DP------LDE 390

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             +R++ L  + +         W  +   R        L  + L   ++      RE AL
Sbjct: 391 GAERIRALTCELLGIQPQALLDWISSKARRRT------LTDTHLAGMRMHPAEEDRELAL 444

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           L  L+  P +L +       + + N  ++K+          Q    P++I +    +   
Sbjct: 445 LRQLLVDPTLLAKLD---GSMPWRNEAVRKV------MLAAQGAQSPDDILEVFRGQPEE 495

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGY----QQALALYKRFRLLSRQKEEIEKQIA 603
           +LL +L  + R+ G  S  T A        Y       + +      +  + + +++Q+A
Sbjct: 496 QLLIRLLFEGRNTGALSRDTNALYEQKVTAYAAAAVDDIQVGLSIDSMRAEVDLLKRQVA 555

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           Q +   +      +  +   +  +     S 
Sbjct: 556 QASPPEQLALLKQIQELQRAIEAEKRARRSS 586


>gi|134301934|ref|YP_001121903.1| DNA primase [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187931643|ref|YP_001891627.1| DNA primase [Francisella tularensis subsp. mediasiatica FSC147]
 gi|134049711|gb|ABO46782.1| DNA primase [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187712552|gb|ACD30849.1| DNA primase [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 605

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 159/596 (26%), Positives = 275/596 (46%), Gaps = 31/596 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                FIK+L+    I +++ +YV+  +   N     Y  CCPFH+EKTPSF  N  K F
Sbjct: 4   KVSNSFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   GD L+F+  +    FI++V+ LA I G P+       +  +KE++    I 
Sbjct: 59  YHCFGCQASGDALTFVKNINKLEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118

Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +  A  ++  +L N+  K +   YL +RGIDS   + F +GY+ +   ++ E  +    
Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELAKSINI 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            EE +++ GL I  D     YDRFR R++FPIR+ +G VIA+GGR     + VKY+NSPE
Sbjct: 179 PEEILVDTGLAIKNDKG-NLYDRFRGRVMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K   LY  +      +K    D+   S   +++VEGYMDV+ L Q G    V++L
Sbjct: 238 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVGLAQHGFYAAVATL 292

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +    ++L++ +  ++LCFDGD+ G +AA + I ++L  L    ++  + L   +D
Sbjct: 293 GTAFSPNHAKILFRETSSVILCFDGDEAGQKAALRTIKILLPMLDGNKKLKILTLPDKDD 352

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I+ YG   F   +  SL + D +     + +     + +AE+  +LKN +  ++D 
Sbjct: 353 PDDYIKKYGLERFLTALDNSLAVADFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDN 412

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                 +  I D++    +++                 + +K  +  + +   ++ K   
Sbjct: 413 IYSESITATIADKIGIKVEQFKNLL-------------KIRKQTTLNVNRQQNIQQKKLA 459

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-- 536
           K  L E  +L  L  + A  +          +  ++   + +       E      E   
Sbjct: 460 KNLLLEEFVLAELFVNIADFRILQHTNDFEIFATSKNLDILAKSLKILKEDSSNQIEAVI 519

Query: 537 IHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
           + Q L E    + E   +L              +     +    ++      + RL
Sbjct: 520 LIQLLAEDYPDYREYFFELLSYGIRNTQKKYAEDKYQEQMFVMLKRVENSSVKKRL 575


>gi|24214931|ref|NP_712412.1| DNA primase [Leptospira interrogans serovar Lai str. 56601]
 gi|24195964|gb|AAN49430.1|AE011394_4 DNA primase [Leptospira interrogans serovar Lai str. 56601]
          Length = 598

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 158/641 (24%), Positives = 282/641 (43%), Gaps = 53/641 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+  +DFI  +   +PI + I +++   +R  N     +   CPFH EK+PSF+ +  K 
Sbjct: 1   MSNKKDFIDRIHREVPIESYISRFIPLKKRGKN-----FIGLCPFHQEKSPSFNVSAEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF C   GD + F+ +     F  S++ L+  +G+PL     K  +       L ++
Sbjct: 56  FYYCFGCKASGDLIRFVMSYERVDFSRSLEILSEYSGIPLEEKSSKNSEFSDF---LYKI 112

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS-LREHLRQKGFS 179
               ++++ H L     K    YL  R I+   I +F LGYAP+   +  +E L+ K   
Sbjct: 113 NLKVSEYYQHLLHTPTGKNALDYLKSREIEDSEIRLFGLGYAPEGFDTLAKEVLKTKEEI 172

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              I    L      +   YD FR+R++FP+    G+ +AF GR L  G+  KY+NS  +
Sbjct: 173 SGAIQLGLLREKEAGNGRPYDFFRDRIMFPVLDLSGRTVAFSGRILGPGKEAKYINSQAS 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           ++F K +  YNFF A   ++K          S   +LVEGY+DV+ L + G +NV++S+G
Sbjct: 233 LIFDKSRTFYNFFKAREGVRK----------SGEAMLVEGYLDVIGLVRRGYENVIASMG 282

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA+TE  +R L K + R+    DGD  G + A +A ++ L     G   + VLL  G+DP
Sbjct: 283 TAITENHIRTLKKFAERVTFVLDGDIAGKKGALRAAEICL---KEGMECSIVLLPEGKDP 339

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT-PDERAELEIHLKNCINHIKDQ 418
               +   +    +++ + +   + + +   EN      P+++ +   +L + I  +  +
Sbjct: 340 FDLSKSLSRPELHEILSDRIQGSEFVVEELLENADSRALPEKKRKSLQNLYSFIQTLGRE 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             + +      ++L       + +  G             + GPS     S+L + +   
Sbjct: 400 TDKQFLLGLGANKLGISMDAVLRDFKGG---------TGAKNGPSNADTSSNLKEVQGIS 450

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            P+L  E  ++  L+ H  +     +E++ + + +     LW +L++ +  ++   P  I
Sbjct: 451 GPALDCERKIVSMLVKHTGLFS-YSEEISSMEFMDIASSYLWDYLYTIYTGEEEISPVGI 509

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                     ++L                      D  +     L    R  LL ++K  
Sbjct: 510 LTSELPEDLKQILA---------------PYLLEEDSEKTEPGELHKVFRILLLQQKKFR 554

Query: 598 IEKQIAQVTAKGEAEKTAILISIL----HEVHIQIHQIESQ 634
           IE++I ++  K E   T  + + L     E    +  I SQ
Sbjct: 555 IEEKIRELDQKRERFFTPEIFTELSFYRKEKEKILEHIRSQ 595


>gi|332297996|ref|YP_004439918.1| DNA primase [Treponema brennaborense DSM 12168]
 gi|332181099|gb|AEE16787.1| DNA primase [Treponema brennaborense DSM 12168]
          Length = 594

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 162/633 (25%), Positives = 270/633 (42%), Gaps = 51/633 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I+D++    + +L+G+Y   + R T     D+W CCPFH EKTPSFH    +  Y
Sbjct: 5   ISQDTIRDVVDRTDLVSLVGEYTRLENRGT-----DWWGCCPFHSEKTPSFHVVPDRKMY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP---KIEKKEKIQTDLIR 119
           YCF CH  G+ + F  ++   SF E+V  LA  AGV +        ++ + +  +   I 
Sbjct: 60  YCFGCHEGGNAIDFCMSMEKLSFTEAVVSLAKRAGVEVVYSGGGKMQVPEYDTTKDQYID 119

Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L       +H+ L      K    Y+ ERG+ +  I  FKLGY+P  R+ L + LR K +
Sbjct: 120 LYTRVAGSYHYFLTATEAGKFALDYVTERGLTAETIAKFKLGYSPADRHWLGQFLRGKNY 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S E + ++GL        + +    +RL+FPI   +GQV+AFGGR L      KY+NS +
Sbjct: 180 SAEFLEKSGLFSKKYQGVSFFS---DRLMFPIFDRKGQVVAFGGRLLHGD-GPKYINSGD 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
            I + KG+ LY F  A   ++           S  +I  EGYMDV++  Q G+ N V+ L
Sbjct: 236 LIQYKKGETLYAFNFARQAIR----------ESKSVIFCEGYMDVIAYHQCGITNAVAPL 285

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT  Q++L+   +  + L FD D  G  A +KAI L          V  + L   +D
Sbjct: 286 GTALTGEQVKLVRSFADTVYLSFDSDGAGKAATWKAILLCR---EADLTVKIIQLQGAKD 342

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +  YG+      +  ++   D L     +    +TP+ + +  +     I+ +K  
Sbjct: 343 PAEIMIKYGRDTLTNYVKNAIIDSDYLLSILAKEHQIDTPEGKTKAALAFFPYIDALKSD 402

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +          L Q F     E        + +AR R     S     S  V  KL+ 
Sbjct: 403 MQKES----CLALLWQTF-NLNPEAVKRDFTNRADARKRISAHESDTGEHSGNVSIKLN- 456

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E   +L +I++          L    +++   + L+  L   + E        I 
Sbjct: 457 ----AELRAVLVVISNFDSFALMRTTLTADDFEDPLARSLFITLEECYRED-SVSYSSIL 511

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            +        ++ ++            T+     +  Q  + ++ L KR   L R++  +
Sbjct: 512 AKCGGEQVKNMVAKV-----------VTSGEYAENPHQLIEDSIKLIKR-NSLERKRTRL 559

Query: 599 EKQIAQVT--AKGEAEKTAILISILHEVHIQIH 629
             +I Q       + ++   L+S    +  +++
Sbjct: 560 MNRIRQFKVATLEDQKELDALLSEKMTLDYELN 592


>gi|94676560|ref|YP_589042.1| DNA primase [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94219710|gb|ABF13869.1| DNA primase [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 595

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 162/631 (25%), Positives = 287/631 (45%), Gaps = 54/631 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI  LL H  I  LI       ++        + ACCPFH++K PSFH +    F
Sbjct: 4   RIPRTFISSLLAHTDIVELIDARFKLKKQGK-----HFIACCPFHNDKIPSFHVSSKMQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119
           Y+CFSC   G+ + FL       F+ES++ LA   G  +P  +       +   +  L  
Sbjct: 59  YHCFSCGSHGNAIDFLMNYDRLGFLESLEELAIRCGWNIPYENNDILNAPQLYSRQRLYD 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+E  + F+  SL   +   ++ YL +RG+++  I  F +G+AP    ++ ++      +
Sbjct: 119 LMEKISIFYQQSLHE-QALVVNSYLQQRGLNATVINDFAIGFAPPGWDNVIKYFGHSAEA 177

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              +   G+++  +++  +YD FRNR++FPIR  RG +IAFGGR L +G+  KY+NSP +
Sbjct: 178 IALLKATGMVV-YNDNGNTYDLFRNRIMFPIRDKRGHIIAFGGRLLGEGQP-KYINSPAS 235

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LFHK   LY  + A        +          +++VEGYMDV++L Q G+  VV+SLG
Sbjct: 236 DLFHKSNQLYGLYEAQQKNANLSK----------LLVVEGYMDVVTLAQFGINYVVASLG 285

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T  Q++LL++ + +++ C+DGD  G  AA+K ++  L +LI   ++ F+ LS  +DP
Sbjct: 286 TATTTEQIQLLYRTTDQLICCYDGDRAGREAAWKTLENALPYLIDKRQLRFMFLSNSQDP 345

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ IR  GK AFEK I ++ PL + L+    +  + +  D+R +L       IN I +  
Sbjct: 346 DTIIRKIGKEAFEKYIEQAQPLSEFLFDTLMQQVNLSNLDDRVKLIALALPLINKIPNGI 405

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R +  Q + +R+  L    + +     +   K+ ++   K     +             
Sbjct: 406 WRLFLRQLLANRVGILDDNKLEKLLQLNKKRVKSQQNLRIKCTPIHI------------- 452

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  L+  L+ +P +     +    +        K++  L     ++      ++ +
Sbjct: 453 -------LIGLLVQNPWLSTLAKRISNKLEQARQPGVKIFIQLVKTCQKEPSLTTGQLLE 505

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ-GYQQALALYKRFRLLSRQKEEI 598
                 F   L+                   I D+ +  +  AL     +  +  Q+++I
Sbjct: 506 LYRHNKFYAQLETFATW----------NHMIIEDLIERTFIDALTKL--YNSILEQRQDI 553

Query: 599 EKQIAQVTAKGEAEKTAI-LISILHEVHIQI 628
              + +       E+  +  ++       Q+
Sbjct: 554 LIALDRKHGLTTEERKELWYLNQALAKKDQL 584


>gi|297194516|ref|ZP_06911914.1| DNA primase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152291|gb|EFH31640.1| DNA primase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 416

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 122/430 (28%), Positives = 204/430 (47%), Gaps = 27/430 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               D +K +   +PI  ++ +Y+       NA  G+    CPFHDEK+PSF  + SKG 
Sbjct: 4   RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIR 119
           ++CF C   GD ++F+  +   SF E+V+RLAA AG+ L   +       +   +  L+ 
Sbjct: 60  FHCFGCQEGGDTIAFVMKIDHLSFSETVERLAAQAGITLRYEEGGYNPTHQRGERIRLVE 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             ++A  F+   L     +    +L ERG D  A + F +GY+P     L  +LR KGFS
Sbjct: 120 AHKIAAQFYVEQLDGPEAEIGRKFLAERGFDQAAAQHFGVGYSPAGWDHLTRYLRGKGFS 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           ++++  +GL    +      DRFR RL++PIR   G+V+ FG R L   ++  KYLN+PE
Sbjct: 180 DKELTLSGL--SQEGRRGPIDRFRGRLMWPIRDITGEVVGFGARKLRDDDNGPKYLNTPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K + LY    A   + +          +S  ++VEGY DV++   AGV   +++ 
Sbjct: 238 TAIYKKSQVLYGIDLAKKEIAR----------TSTAVVVEGYTDVMACHLAGVTTAIATC 287

Query: 299 GTALTEYQLRLLW-----KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           GT+     +++L        +  ++  FDGD  G +AA +A +            +  + 
Sbjct: 288 GTSFGGDHIKILRRLLMDNATAEVIFTFDGDAAGQKAALRAFEDDQKFAA---ETSIAIT 344

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP       G  + +KL+    PL +   ++     +  TP  RA         + 
Sbjct: 345 PGGMDPCELRLAEGDESVQKLVETRTPLFEFAIRQMVRRHNLETPAGRAAALDEAAPIVA 404

Query: 414 HIKDQKLRYY 423
            IK+  +++ 
Sbjct: 405 GIKNVAIQHE 414


>gi|213579982|ref|ZP_03361808.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 321

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 121/334 (36%), Positives = 187/334 (55%), Gaps = 19/334 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    DF+  SL +   K    YL +RG+ +  I+ F +G+AP    +  +       +
Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           +  +++AG+L+  +   ++YDRFRNR++FPIR  RG+VI FGGR L   ++ KYLNSPET
Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+ LY  + A  Y  +  R          +++VEGYMDV++L Q  +   V+SLG
Sbjct: 237 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYK 333
           T+ T   + +L++ +  ++ C+DGD  G  AA++
Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWR 320


>gi|45657568|ref|YP_001654.1| DNA primase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45600807|gb|AAS70291.1| DNA primase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 598

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 158/641 (24%), Positives = 282/641 (43%), Gaps = 53/641 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+  +DFI  +   +PI + I +++   +R  N     +   CPFH EK+PSF+ +  K 
Sbjct: 1   MSNKKDFIDRIHREVPIESYISRFIPLKKRGKN-----FIGLCPFHQEKSPSFNVSAEKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF C   GD + F+ +     F  S++ L+  +G+PL     K  +       L ++
Sbjct: 56  FYYCFGCKASGDLIRFVMSYERVDFSRSLEILSEYSGIPLEEKSSKNSEFSDF---LYKI 112

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS-LREHLRQKGFS 179
               ++++ H L     K    YL  R I+   I +F LGYAP+   +  +E L+ K   
Sbjct: 113 NLKVSEYYQHLLHTPTGKNALDYLKSREIEDSEIRLFGLGYAPEGFDTLAKEVLKTKEEI 172

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              I    L      +   YD FR+R++FP+    G+ +AF GR L  G+  KY+NS  +
Sbjct: 173 SGAIQLGLLREKEAGNGRPYDFFRDRIMFPVLDLSGRTVAFSGRILGPGKEAKYINSQAS 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           ++F K +  YNFF A   ++K          S   +LVEGY+DV+ L + G +NV++S+G
Sbjct: 233 LIFDKSRTFYNFFKAREGVRK----------SGEAMLVEGYLDVIGLVRRGYENVIASMG 282

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA+TE  +R L K + R+    DGD  G + A +A ++ L     G   + VLL  G+DP
Sbjct: 283 TAITENHIRTLKKFAERVTFVLDGDIAGKKGALRAAEICL---KEGMECSIVLLPEGKDP 339

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT-PDERAELEIHLKNCINHIKDQ 418
               +   +    +++ + +   + + +   EN      P+++ +   +L + I  +  +
Sbjct: 340 FDLSKSLSRPELHEILSDRIQGSEFVVEELLENADSRALPEKKRKSLQNLYSFIQTLGRE 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             + +      ++L       + +  G             + GPS     S+L + +   
Sbjct: 400 TDKQFLLGLGANKLGISMDAVLRDFKGG---------TGAKNGPSNADTNSNLKEVQGIS 450

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            P+L  E  ++  L+ H  +     +E++ + + +     LW +L++ +  ++   P  I
Sbjct: 451 GPALDCERKIVSMLVKHTGLFS-YSEEISSMEFMDIASSYLWDYLYTIYTGEEEISPVGI 509

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                     ++L                      D  +     L    R  LL ++K  
Sbjct: 510 LTSELPEDLKQILA---------------PYLLEEDSEKTEPGELHKVFRILLLQQKKFR 554

Query: 598 IEKQIAQVTAKGEAEKTAILISIL----HEVHIQIHQIESQ 634
           IE++I ++  K E   T  + + L     E    +  I SQ
Sbjct: 555 IEEKIRELDQKRERFFTPEIFTELSFYRKEKEKILEHIRSQ 595


>gi|297566670|ref|YP_003685642.1| DNA primase [Meiothermus silvanus DSM 9946]
 gi|296851119|gb|ADH64134.1| DNA primase [Meiothermus silvanus DSM 9946]
          Length = 587

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 158/627 (25%), Positives = 270/627 (43%), Gaps = 59/627 (9%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           ++ +   +PI  L+G+YV           G +   CPFH EKTPSFH ++SKG  YCF C
Sbjct: 9   VELIRSRMPIRELVGRYVALKPAGK----GRWKGLCPFHQEKTPSFHVDESKGLCYCFGC 64

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
              GD   FL  + G  F E+++RLA   GV LP    + +K+E     L  ++ +A ++
Sbjct: 65  KAGGDIFGFLQKIEGIDFREALERLAQETGVELPESRSQGKKRE-----LYEVLNLAQEY 119

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
           F   L+         YL  RG+   +++ F LGYAP S   L + L  KG + E+ + AG
Sbjct: 120 FSTHLQ----AEALAYLKGRGLSDASVQKFGLGYAPQSWDGLIKFLSSKGVTPEEGLAAG 175

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247
           +L + D     +DRFR+R+ FPI+ + G+ +AF  R LSK +  KYLNSPET +F K   
Sbjct: 176 VLAERDG--RYFDRFRHRITFPIQDALGRTVAFTARALSKDDQPKYLNSPETPIFKKTLL 233

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           LY F  A   L++  R           I+VEG  DV++L Q G    V+ LG+ L   Q 
Sbjct: 234 LYGFPQARQSLRERGRA----------IVVEGLFDVIALHQMGFTEAVAVLGSGLAADQG 283

Query: 308 RLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS-FIRC 365
            LL +   R I L FD D+ G +A  ++++L    +     V  V L  G+DP    +  
Sbjct: 284 MLLKRYDVREIYLSFDADEAGRKATLQSLEL---EIARSFLVYAVALEGGKDPGDLLLLP 340

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKLRYYY 424
            G   +++ +  +LP V+  ++   +  +  + + +  +   L    +++     +    
Sbjct: 341 DGPERYQRALEAALPEVEFRFQAAAQGINLESVEGKRRVLEALLPRLLSNDPLDGVAEAL 400

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + ++DRL       +   +       + A    ++ P        L +  L++K  LRE
Sbjct: 401 KRVVQDRLG------LERRALEDYLRSRKALPSRRELPPNPGTAFGLARPDLTEKRLLRE 454

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-RLCE 543
             ++  L + P                + E  +   ++       +  L  E  Q     
Sbjct: 455 LDVIALLYSAP----------------DEEFAQWAQYVEDHTWPPEGSLLAEFMQVAKSG 498

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            G   +++    +     L+ A  +           Q      R R +  +      ++ 
Sbjct: 499 VGKARVIRHFQERGEGDRLFDALMKRPDEIPSDLENQLNLSMARLREVYYEI-----RLD 553

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQ 630
           ++    +A  +   +  + E+   I  
Sbjct: 554 RLKQDLKAGPSVETLREIQEIQRAIEA 580


>gi|62261434|gb|AAX77989.1| unknown protein [synthetic construct]
          Length = 640

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 159/596 (26%), Positives = 276/596 (46%), Gaps = 31/596 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                FIK+L+    I +++ +YV+  +   N     Y  CCPFH+EKTPSF  N  K F
Sbjct: 30  KVSNSFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 84

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   GD L+F+  +    FI++V+ LA I G P+       +  +KE++    I 
Sbjct: 85  YHCFGCQASGDALTFVKNINKLEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 144

Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +  A  ++  +L N+  K +   YL +RGIDS   + F +GY+ +   ++ E ++    
Sbjct: 145 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELVKSINI 204

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            EE +++ GL I  D     YDRFR R++FPIR+ +G VIA+GGR     + VKY+NSPE
Sbjct: 205 PEEILVDTGLAIKNDKG-NLYDRFRGRVMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPE 263

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K   LY  +      +K    D+   S   +++VEGYMDV+ L Q G    V++L
Sbjct: 264 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVGLAQHGFYAAVATL 318

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +    ++L++ +  ++LCFDGD+ G +AA + I ++L  L    ++  + L   +D
Sbjct: 319 GTAFSPNHAKILFRETSSVILCFDGDEAGQKAALRTIKILLPMLDGNKKLKILTLPDKDD 378

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I+ YG   F   +  SL + D +     + +     + +AE+  +LKN +  ++D 
Sbjct: 379 PDDYIKKYGLERFLTALDNSLAVADFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDN 438

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                 +  I D++    +++                 + +K  +  + +   ++ K   
Sbjct: 439 IYSESITATIADKIGIKVEQFKNLL-------------KIRKQTTLNVNRQQNIQQKKLA 485

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-- 536
           K  L E  +L  L  + A  +          +  ++   + +       E      E   
Sbjct: 486 KNLLLEEFVLAELFVNIADFRILQHTNDFEIFATSKNLDILAKSLKILKEDSSNQIEAVI 545

Query: 537 IHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
           + Q L E    + E   +L              +     +    ++      + RL
Sbjct: 546 LIQLLAEDYPDYREYFFELLSYGIRNTQKKYAEDKYQEQMFVMLKRVENSSVKKRL 601


>gi|228471179|ref|ZP_04055992.1| putative DNA primase [Porphyromonas uenonis 60-3]
 gi|228306994|gb|EEK16076.1| putative DNA primase [Porphyromonas uenonis 60-3]
          Length = 674

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 151/690 (21%), Positives = 287/690 (41%), Gaps = 73/690 (10%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
                + ++    I +++  +V   R+ +      +   CPFH ++ PSF    SK    
Sbjct: 2   DEQTKQLIIDTARIEDVVSDFVQLRRKGSG-----FVGLCPFHKDRHPSFIVTPSKNICK 56

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLI 121
           CF+C   G  +SF+  +  CSF+++++ LA    +P+P      + ++++  +  L    
Sbjct: 57  CFACGAGGTPVSFIMKIQNCSFVDALRYLAQKYNIPVPEREMTEEEQQRQNEREALYLAN 116

Query: 122 EVATDFFHHSLKNARDK--RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           EVA  FF   L +  +       Y  +RG+ S AI+ F LGY+P  R +L +++ + G+ 
Sbjct: 117 EVAAKFFTEQLLSQEEGLDVALPYFTQRGVRSEAIQTFGLGYSPSDRRALAKYVEEHGYD 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238
            E  +  GLL        S DR+  R+IFPI +  G+V+ FGGRT+ K  +  KY+NSPE
Sbjct: 177 MESFVATGLLYAPSEGRPSADRYHERVIFPIYNVGGRVVGFGGRTMRKADKIAKYINSPE 236

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + ++ K + LY  + A   +                I+VEGY+DV+++ Q G++NVV++ 
Sbjct: 237 SFIYDKSRELYGLYQAKRAIA----------QRDQGIIVEGYLDVIAMHQVGIENVVATS 286

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE Q++LL + S  +++ FDGD+ G++AA +++D+    L  G ++  ++L  GED
Sbjct: 287 GTALTESQIQLLRRFSRNVLVLFDGDEAGVKAALRSVDM---LLAEGMQIKLLVLPDGED 343

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD F+    +   E+              +    +    P  + +L   +   I  I D 
Sbjct: 344 PDEFVSKRSRAEVEEYFAAHQQDFLTFKSQLYAPQMAQDPQLKTQLMRDILQSIATIPDS 403

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG--PSQRLMQSSLVKGKL 476
             R  Y Q +           + +         +  ++   +   P +   + +  +   
Sbjct: 404 LERIVYIQQMSQMYGVAEDLLLQQIKQERFSRGRVYQYAPPEAATPEESAPEETPQEVSP 463

Query: 477 SKKPSLREAA-LLLTLINHPAILQEQ---YQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
              P   EA  L+  ++ +   + +     +E  +          + +F++ +  +    
Sbjct: 464 LDAPMSNEALDLIRLVVRYGERMLKISVQDEEADESAEPTVIRVSVANFVYQELKQDDIV 523

Query: 533 LPEEIHQRLCERGFGELLKQLD----------------------------------RQVR 558
           +   + +R+       +L++LD                                  R  R
Sbjct: 524 IEHPLVKRILNDSNKMMLEELDVSGGESERTCGSFLCNSEIPQVSALAVDLYATPYRLSR 583

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYK----RFRLLSRQKEEIEKQI---AQVTAKGEA 611
            A       +     V   + Q +        +      + ++I +QI    Q   + + 
Sbjct: 584 KAREELQMPDDENEKVPDEWVQEMTFKVLYTYKLAYAEERCQQISQQIQTLQQEHPEADY 643

Query: 612 EKTAILISIL---HEVHIQIHQIESQEAMI 638
           E    L+  L    E+   + Q   Q  +I
Sbjct: 644 ESYQPLLQELSTWQEIRKMLGQFSGQRVVI 673


>gi|329571350|gb|EGG53037.1| DNA primase [Enterococcus faecalis TX1467]
          Length = 472

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 138/471 (29%), Positives = 228/471 (48%), Gaps = 30/471 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++ I+++     I ++IGQYV   +   N     Y   CPFH+E++PSF   + K  
Sbjct: 4   RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116
           ++CF C   G   +FL  + G SF ESV+R+A +  + +        +     + + +  
Sbjct: 59  FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L++L   A + +HH L      +    YL ERG+    IE F++G+AP  R  L +  + 
Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230
           +   E     +GL +  DN  T  DRF  R++FPI   +G VIAF GR L        E 
Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF+K + L+NF  A   ++K           + ++L EG+MDV++  Q+G
Sbjct: 238 PKYLNSPETTLFNKRETLFNFDRARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V++ V+S+GT+LT  Q+R L +++  +V+C+DGD+ G++A  +AI L+  +      +  
Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           V +    DPD ++R YG  AF+ L       +           R+ N   E+ +    L 
Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
             + +++    R  Y   I    Q        + +   +  +   R   Q+
Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQ 456


>gi|227499775|ref|ZP_03929875.1| DNA primase [Anaerococcus tetradius ATCC 35098]
 gi|227218161|gb|EEI83427.1| DNA primase [Anaerococcus tetradius ATCC 35098]
          Length = 544

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 161/598 (26%), Positives = 266/598 (44%), Gaps = 57/598 (9%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M+    D I  +L    I ++IG+YVD  R  +      +   CPFH+EKTPSF  +D K
Sbjct: 1   MSLISDDKINQILQSSNIVDVIGEYVDLKRSGS-----SFKGLCPFHNEKTPSFTVDDKK 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
             ++CF C   GD +SF+    G S+ ES++ LA  AG+ +     +  +      +L  
Sbjct: 56  QLFHCFGCGAGGDVVSFIMQKEGLSYPESLEFLAHKAGISIDYT--EDPQVNNKNKELYD 113

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           + +    FF+ +L    D++   YL +RG+ S  +  F LGYA DS   L  +++ K ++
Sbjct: 114 INKDIMMFFYKNLL--VDRKAQQYLKQRGLSSKVVNTFMLGYAKDSWDDLYAYIKTKNYN 171

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           EE I   GL I   +    YD++R+R+IFPI +  G+VI FGGR    G+  KYLNSPE+
Sbjct: 172 EEDIESLGL-IKKSSKGNYYDKYRDRIIFPIINHFGKVIGFGGRA-VSGQMPKYLNSPES 229

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K  NLY         +K             +ILVEGYMDV++L   G+   V+SLG
Sbjct: 230 SVFKKRYNLYALNVYKRQKRK------------ELILVEGYMDVIALNNHGLDIAVASLG 277

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALT  Q +L+ + S  I +C+D D  G++A  KAI++           + + L  G DP
Sbjct: 278 TALTLDQAKLMKRYSDDIYICYDQDAAGIKATEKAIEI---FHQIDVNPSIIDLDPGNDP 334

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D FIR  GK AFE  I  +    +  + +  +  S   P ER +        +  IK + 
Sbjct: 335 DDFIRANGKDAFEDKIKNASDSYNYKYNKILDEYSKANPSERLDKLNLFVEFLASIKQEL 394

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  +   +               S Y +   +    + +   ++ ++   +  G     
Sbjct: 395 TQEIFINNVSKLFDIDKITLKQAISRYNKNTDQKMEDKAKFYKNKPIIVEKVDTGFR--- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                       IN   +L+  + + +D      + ++ +                 +  
Sbjct: 452 ------------INDLEVLRLFFNQRSDYE----KYREFFDKSIE------NEKINNVKT 489

Query: 540 RLCERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            L E+   +  L+ +D +     +   T       + +  ++ + LY R + L R K+
Sbjct: 490 FLKEKDVSKFDLEDMDYRYILDYIRDNTNPI----LAEELKRKIILYNRKKELERLKK 543


>gi|303327389|ref|ZP_07357830.1| DNA primase [Desulfovibrio sp. 3_1_syn3]
 gi|302862329|gb|EFL85262.1| DNA primase [Desulfovibrio sp. 3_1_syn3]
          Length = 578

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 158/626 (25%), Positives = 267/626 (42%), Gaps = 63/626 (10%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +D I+ +   + I +++ ++V+  R         + A CPFH E  PSF  N+ +G +Y
Sbjct: 3   SKDAIRAIKERLNIVDIVRRFVELKRNG-----PRWVAPCPFHQETKPSFSVNEEQGMFY 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP------VVDPKIEKKEKIQTDL 117
           CF CH  GD   F   + G  F E +++LAA AG+ +           +  ++   +  +
Sbjct: 58  CFGCHASGDIFDFYGRINGLDFKECLEQLAAEAGITIERGRSNARSQGEERERRSGRQQM 117

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +R+ E+A   F  +L++        Y+++RG+    ++ F LG+A     SL + LR+ G
Sbjct: 118 LRMYELAAGHFSAALQSPEAAECREYIEKRGLSEDIVQRFGLGWARREWQSLADALRRAG 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           F     +EAGLL     +  +YDRFR RL+FPI+S   Q+IAFGGR ++  +  KY+NS 
Sbjct: 178 FDARLAVEAGLLGQS-GNGRAYDRFRGRLVFPIKSLSNQIIAFGGRIIAGEDEAKYINSS 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T ++ KG++LY    A   +    R           +L EGYMDVL+L Q G  N V  
Sbjct: 237 DTPIYKKGEHLYGLAQARRGITTKGRA----------LLTEGYMDVLTLHQFGYDNAVGV 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTALT  Q++ L   + ++VL FDGD  G +AA ++ ++    L  G   N VL+  GE
Sbjct: 287 LGTALTPEQIKRLSGFASQMVLLFDGDRAGRKAALRSCEM---LLTRGLACNVVLMPEGE 343

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           D DS +R  G  AFE+L  ++   +              T +               ++ 
Sbjct: 344 DIDSLLRTAGPEAFEELQAKAPDGLRFCVDVLKALAPRETVEWARNFLR-------QVEL 396

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +L   Y   +   LQ    +     + +    +        +     L + +       
Sbjct: 397 PELVSPYVSRLAGHLQLSENELRQGLAAWHSQKQDGRGRAPAQTAKPSLARQN------- 449

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
               +R+  +++  + +P  L +     AD+   +   ++LW  +     E  Y      
Sbjct: 450 ----MRDRQIMMYAVRYPERLDDLRALGADLTLQSAVARRLWDKIEELGEESPYH----- 500

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                          LD++ ++        EA   D      + L         S QK  
Sbjct: 501 ---------------LDQREKNFWTLCRGAEAAPRDNGDKELEFLRRDLDAYYASAQKSS 545

Query: 598 IEKQIAQVTAKGEAEKTAILISILHE 623
           +   + + T  G+       +  L E
Sbjct: 546 VSAALRENTGTGDFAADLDYLRALQE 571


>gi|294787102|ref|ZP_06752356.1| DNA primase [Parascardovia denticolens F0305]
 gi|315226754|ref|ZP_07868542.1| DNA primase [Parascardovia denticolens DSM 10105]
 gi|294485935|gb|EFG33569.1| DNA primase [Parascardovia denticolens F0305]
 gi|315120886|gb|EFT84018.1| DNA primase [Parascardovia denticolens DSM 10105]
          Length = 723

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 140/729 (19%), Positives = 249/729 (34%), Gaps = 119/729 (16%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  ++ +     + +++   V           G +   CPFHDEKT SFH   S G +
Sbjct: 5   ISKKSVEQVRAAADLYDIVSADVTLKNSGA----GSFVGLCPFHDEKTGSFHVRPSLGTW 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP-----KIEKKEKIQTDL 117
           +CF C + GD   ++       F ++V+ LA    + L   D        ++K   +  L
Sbjct: 61  HCFGCGLGGDVFGYVEQKENVDFAQAVELLADRYHIELEYEDQGRGKTDRQRKGATRARL 120

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           + + E    FF   L           L  R       E F  GYAP    +L  HL   G
Sbjct: 121 LEVCEQTQKFFASQLPTDDALPARKLLGGRNFTQSDCERFGCGYAPQGWDTLVRHLSSLG 180

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235
           +++E+++EAG+   G  + ++YD FR R  +PIR S G+ + FG R L   + +  KY+N
Sbjct: 181 YTQEEMVEAGVARRG-QNNSAYDYFRGRATWPIRDSTGRTVGFGARRLYDDDKIEAKYIN 239

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           +P+T L+HK + LY    A   + K             I++VEGY DV++   AGV   V
Sbjct: 240 TPDTALYHKNQVLYGIDIAKPNIVKK----------RQIVIVEGYTDVMACHLAGVDVAV 289

Query: 296 SSLGTALTEYQLRLLWKLSPR----------------IVLCFDGDDPGLRAAYKAIDLVL 339
           ++ GTA  +   +++ +                    ++  FDGD  G +AA  A  L  
Sbjct: 290 ATCGTAFGQEHAKIVRRFIRDDSLGAVQLVGPTHGSGVIFTFDGDAAGQKAALHAFGLDD 349

Query: 340 CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399
             L    +    +     DP      YG  A   LI + +PL D + +    +       
Sbjct: 350 AFLT---QTFVAVARENLDPCDLRIKYGDEAVRNLIHDRVPLYDFVIQAAIRSFDTQFTT 406

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK-------- 451
                   +   I  I+D  L   Y++    ++         E     R  +        
Sbjct: 407 GLVGAMKAVAPVIAKIRDDSLLDSYTRKYAGQIGVSVGDLRREVLAERRRQRIASADAYV 466

Query: 452 ----------------------------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                                       ++ R  D +   +RL Q    + K   K   R
Sbjct: 467 PRRSAYGTGSYENSFGYGGGAGSGPGGFESDRSSDSQPLDRRLFQEWANRKKAIDKGYYR 526

Query: 484 --------EAALLLTLINHPAIL-----QEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
                   E      LI  P  L      E +  L    +     + ++  L       +
Sbjct: 527 VDDTVFSTEQQFFGILIQSPLALTGPMNAELFSRLTRRCFTTPVFRSMFDALEVAGGLPQ 586

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE---------------------- 568
              P+ +      +  G +L ++  ++    L  +                         
Sbjct: 587 SDTPQGLWIHELTKAAGPVLTRVINELAVLPLPLSAKNRTSAGSDQTASSTGPGPSGRPQ 646

Query: 569 -------ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                  A   +    +   L +        R   ++++++ ++    E  +    ++ +
Sbjct: 647 GPAPVQLAPATEAEVKFAHQLLVGILDADAMRAIAQLKRKMNRLPEGEEKIRLLGTMNTI 706

Query: 622 HEVHIQIHQ 630
                 +  
Sbjct: 707 ETWRKDLTA 715


>gi|300778995|ref|ZP_07088853.1| DNA primase [Chryseobacterium gleum ATCC 35910]
 gi|300504505|gb|EFK35645.1| DNA primase [Chryseobacterium gleum ATCC 35910]
          Length = 662

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 150/658 (22%), Positives = 286/658 (43%), Gaps = 54/658 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +   I +  ++G+YV   R  +N     Y    PFHDEKTPSF  + SK  +
Sbjct: 2   ISKQTIDKIFSTIRVEEIVGEYVQLKRAGSN-----YKGLSPFHDEKTPSFVVSASKQIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV----DPKIEKKEKIQTDLI 118
             FS    G  +SFL  +   ++ E+++  A   G+ +         + +  +  +  L 
Sbjct: 57  KDFSTGKGGTAISFLMEIENFTYPEALRHAAKKYGIEIEEDQRDISEEAKNAQTEKDLLY 116

Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           ++ EVA  +F   L + ++ R     Y  ER +    I+ F+LGY+P+ + +   +  +K
Sbjct: 117 KIHEVANTYFQEILWDDQEGRSIGLSYFKERELRDDIIKKFQLGYSPEKKNAFTAYALEK 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235
           G+++E + ++GL I  +N+    DRFR R+IFPI S  G+V+ FG R L    ++ KYLN
Sbjct: 177 GYTKEILEKSGLSIFPENTPAGVDRFRERVIFPIHSFSGRVLGFGARILKNNVKTAKYLN 236

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET ++HK   LY    +   + +           +  +LVEGYMDV+SL  +G++NVV
Sbjct: 237 SPETEIYHKSNVLYGLNQSKQAISRK----------NACLLVEGYMDVISLHMSGIENVV 286

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S GT+LT  Q++L+ +L+  + + FDGD+ G++A++++ID+    L  G  +  +L   
Sbjct: 287 ASSGTSLTTEQIKLIKRLTENVTILFDGDNAGIKASFRSIDM---LLTEGMNIRVLLFPD 343

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R + +   EK I                    N P ++AE    +   ++ +
Sbjct: 344 GDDPDSFARKHPQEYVEKYIENEAMDFIDFKAEILLKDIGNDPIKKAEAIRDIVKSVSFV 403

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           ++   R  Y + + ++     Q    E     +  +    H  Q+   +       +   
Sbjct: 404 QNALKREVYLKEVSNKFGLSEQSLFNELDVQKQITQNQTHHVQQQQKEKAAAPKMEIVPL 463

Query: 476 LSKKPSL-------REAALLLTLINHPAILQE------------QYQEL------ADIRY 510
             +K           E  L+  ++    I+ +              +E+          +
Sbjct: 464 DQEKEDPFLYDVLFMENKLVDHMLMFGDIILKRRNEQNEEYQITVIEEILHHFEEEQYTF 523

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTE 568
              E + + + +     + +          + E    +++  L    ++ +    +    
Sbjct: 524 LVKENEIIINQVREGIQKDELRSGNFFVSFMDEEITTKVVDALIPLDELENWASRNIYPP 583

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
                V    +  + L+ ++R +    +E  K++ Q +   +  K   LI  +  +  
Sbjct: 584 NYGDKVADQIKGDILLH-KYRYIDYLIKETAKELDQYSNT-DEIKYYELIKKITLLKQ 639


>gi|325677669|ref|ZP_08157321.1| DNA primase [Ruminococcus albus 8]
 gi|324110637|gb|EGC04801.1| DNA primase [Ruminococcus albus 8]
          Length = 599

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 127/615 (20%), Positives = 258/615 (41%), Gaps = 29/615 (4%)

Query: 4   PRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            +DF++ L    PI+ ++ +  V+          G +   CPFH + +PS      KGF+
Sbjct: 2   DQDFLEKLKFENPINEVMRENGVELKTTGR----GAFMCNCPFHADSSPSCSVVPDKGFF 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C V GD ++F+       F++++  LA  AG+ +P    + +K  K +  +  + +
Sbjct: 58  HCFGCGVSGDVIAFVRKYKNLGFMDAINYLAQRAGMTVPSFSTESDKSYKRRMRIYEMNK 117

Query: 123 VATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A  FF   LK     R   Y + +R +D+  I  + +G AP+S  +L+ H+   G+ E+
Sbjct: 118 AAAKFFRAQLKTPDGVRCLNYLMKQRKLDAATINKYGMGCAPNSFTALKSHMMNLGYGED 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL-NSPETI 240
           +++ A LL     +  +YD F +R +FP     G ++ FGGRTL   +          + 
Sbjct: 178 ELVSASLLGRSYKTGRTYDFFMDRAMFPFIDVAGNIVGFGGRTLGDDKRKYLNTGDTTSE 237

Query: 241 LF---HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
            F   +  + L  +  +                S  ++L EG +DV+SL Q G  N V+S
Sbjct: 238 AFRSTNDERLLDGYSKSRFVFS-LNYAKDDAVKSKKLLLCEGNLDVISLYQHGFHNAVAS 296

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT+ Q+R +   +  +V+C+D D PG +AA +A+ +       G   + + +   +
Sbjct: 297 CGTALTKEQVRAMKTYADEVVICYDADAPGQKAALRAVSM---LREGGMGSSVIHMEGAK 353

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +I  +G+  F  LI  +    D       +    +   +R        + +    D
Sbjct: 354 DPDEYINKFGEEHFRYLINNAADGFDFELGIFAQGLDLSKRVDRNNFLKKAYHAMALEPD 413

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           + +R      + D+    F       +      K+   + +++   ++++     +   +
Sbjct: 414 ETVRDMMEHEVADKYDVTFDVVRASVNEVRMKLKEYEANTERREEYRQMV--LAEENVPN 471

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            K    E  L+  +  +     E  + ++   + ++  ++++  +       +   PE  
Sbjct: 472 NKAFKAERGLIYYIYYNGDNAAEMCKGISPDEFTDDFNRRVFVSIMGKLTVGEIITPESF 531

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ--- 594
                      + + L +                 +V + Y Q++  Y + + +      
Sbjct: 532 LDEFSHEEVERIRQFLSKYAEYNV---------NGEVARQYIQSIKDYNKKKEVKNAEPT 582

Query: 595 -KEEIEKQIAQVTAK 608
            +EE  +++A++  K
Sbjct: 583 SREEFMQKVAELQRK 597


>gi|118497506|ref|YP_898556.1| DNA primase [Francisella tularensis subsp. novicida U112]
 gi|195536200|ref|ZP_03079207.1| anticodon nuclease activator family protein [Francisella tularensis
           subsp. novicida FTE]
 gi|118423412|gb|ABK89802.1| DNA primase [Francisella novicida U112]
 gi|194372677|gb|EDX27388.1| anticodon nuclease activator family protein [Francisella tularensis
           subsp. novicida FTE]
          Length = 605

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 155/595 (26%), Positives = 268/595 (45%), Gaps = 29/595 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                FIK+L+    I +++ +YV+  +   N     Y  CCPFH+EKTPSF  N  K F
Sbjct: 4   KVSNSFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   GD L+F+  +    FI++V+ LA I G P+       +  +KE++    I 
Sbjct: 59  YHCFGCQASGDALTFVKNINKLEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118

Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +  A  ++  +L N+  K +   YL +RGIDS   + F +GY+ +   ++ E  +    
Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELAKSINI 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            EE +++ GL I  D     YDRFR R++FPIR+ +G VIA+GGR     + VKY+NSPE
Sbjct: 179 PEEILVDTGLAIKNDKG-NLYDRFRGRVMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K   LY  +      +K    D+   S   +++VEGYMDV+SL Q G    V++L
Sbjct: 238 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVSLAQHGFYAAVATL 292

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +    ++L++ +  ++LCFDGD+ G +AA + I ++L  L    ++  + L   +D
Sbjct: 293 GTAFSPNHAKILFRETSSVILCFDGDEAGQKAALRTIKILLPMLDGNKKLKILTLPDKDD 352

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I+ YG   F   +  SL + + +     + +     + +AE+  +LKN +  ++D 
Sbjct: 353 PDDYIKKYGLERFHTALGNSLAVAEFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDN 412

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                 +  I D++    +++        +      R ++ +                  
Sbjct: 413 IYSESITATIADKIGIKVEQFKNLLKIRKQTTVNVNRQQNIQQKKLAKNLLLEELVLAEL 472

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             ++ +  +L    N   I              +  L  L   L     +    +   I 
Sbjct: 473 FVNIADFRILQH-TNDFEIFA-----------TSKNLDILAKSLKILKEDSSNQIEAVIL 520

Query: 539 QRLCER---GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            +L       + E   +L              +     +    ++      + RL
Sbjct: 521 IQLLAEDYPDYREYFFELLSYGIRNTQKKYAEDKYQEQMLVMLKRVENSSVKKRL 575


>gi|303245331|ref|ZP_07331615.1| DNA primase [Desulfovibrio fructosovorans JJ]
 gi|302493180|gb|EFL53042.1| DNA primase [Desulfovibrio fructosovorans JJ]
          Length = 574

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 158/626 (25%), Positives = 251/626 (40%), Gaps = 60/626 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +    +  +     I+ ++G+YV                 CPFH E   SF+ +  KG
Sbjct: 1   MKHDASVVTAVKARANIAEVVGRYVTLRPVGN-----RLVGACPFHQETKGSFNVHPDKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLI 118
           F++CF C   GD + F   + G  F E ++RLAA  GV +     DP+  K+++ +   +
Sbjct: 56  FFHCFGCQASGDVIDFYCRINGLEFREGLERLAAEVGVDIGRVKSDPRAAKRKQERDACL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + E+A  +F H L+         YL  R +    IE F LG +P     L + LR++GF
Sbjct: 116 AMHELADRYFRHVLERPEGATAREYLARRQVSPEMIERFALGVSPAGWQGLCDVLRRRGF 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           SE+  + AGLL     +   +DRFR+RL+FPIR   G+VIAFGGR +      KYLNS E
Sbjct: 176 SEDAGVLAGLL-STGKNGRVWDRFRDRLMFPIRDGGGRVIAFGGR-IMGDGEPKYLNSAE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ KG++LY  F A  ++ KS R           +L EGY+DV++L Q G       L
Sbjct: 234 TPIYTKGQHLYGLFEARPHMTKSRRA----------LLTEGYLDVITLHQFGYGEACGVL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT  Q + L   + ++ L FDGD PG +AA +A  + L     G     V L  GED
Sbjct: 284 GTALTTEQTKRLSGFAKQVDLVFDGDPPGRKAALRAAQMFLTL---GGACRVVPLPDGED 340

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            DS +   G+  FE+ +  +   +    +   E  S                 +  + D+
Sbjct: 341 VDSLLHARGRDGFEECLARAEDGLTFCLRVVRETYSPKDMAAW------AVEFLASLGDE 394

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            LR  +   +   L     +             +                   VK + + 
Sbjct: 395 ALRAVFIPRVSAGLGLAEIELRRFLGEAVSRPGRQ-------------PALVAVKRRRAL 441

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           + S R+A LL   +  P  L+                +                   +  
Sbjct: 442 EMSPRDAQLLSFAVRRPDYLETLSGAGMAEGLSTEAAR-------------------DFF 482

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            RL   G  EL  +LD         +    A   +      + + ++        Q+  +
Sbjct: 483 ARLLGGGSDELATRLDAAQTAFWTKAQLEPAVGDEEAAAIYEDICVFLHKCSERDQRRVL 542

Query: 599 EKQIAQVTAKGEAEKTAILISILHEV 624
              + +   +G   +   L+  L  +
Sbjct: 543 MDALRRAQEQGAHAEALRLLGELQAL 568


>gi|291287658|ref|YP_003504474.1| DNA primase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884818|gb|ADD68518.1| DNA primase [Denitrovibrio acetiphilus DSM 12809]
          Length = 569

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 132/631 (20%), Positives = 248/631 (39%), Gaps = 64/631 (10%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P   I ++L    +  L+ + V   +         +   CPFH EKTPSF+ +  KG
Sbjct: 1   MKIPDSKIDEILEQTDLYQLVDEVVPLKKAG----GSSFKGLCPFHTEKTPSFNVHPDKG 56

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           +++CF C   G+ +SF     G SF ++V+ L    GV +       +   K   D++ L
Sbjct: 57  YFHCFGCGEGGNAISFAMKYHGLSFPDAVRMLGERCGVEIEY----DQTASKDAKDIVAL 112

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E         L +   K+   YL ER      +E +++GY P +    +   +   + +
Sbjct: 113 HEELIIDSRKYLYSIEGKKALAYLTERKFSDRLLEEYQVGYFPPNVDPAKYIRK---YDK 169

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             +I +GL  +G         F +R++ P++   G+ IAF GRT+   +  KY+NSPET 
Sbjct: 170 SVLINSGLFKEG--KYGLRLMFYDRVMIPVKGVTGKTIAFSGRTI-SDQQPKYINSPETE 226

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + L+N   A   L+KS           F ++VEGY DV+ L + G  N V+S+GT
Sbjct: 227 VFKKRRVLFNMDKAKQSLRKS----------EFAMVVEGYFDVMRLHEYGYGNCVASMGT 276

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LT   + LL + +  I + FDGD  G ++A K+++     +        V L  GEDPD
Sbjct: 277 SLTSDHIGLLRRYTGDIYMLFDGDQAGYKSALKSLE---TFVQADTFPYVVFLPEGEDPD 333

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           SFI  +GK +F++LI     L   L+  E   +     + +      +K+ +  +K    
Sbjct: 334 SFIDKHGKDSFDQLIGAKKDL--FLFAAEVLLKKSKDFNAKLRSLDKIKSMLISVKSPYR 391

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           + YY+Q +    Q        +                 +   +R    +          
Sbjct: 392 KDYYAQKLAVMFQVDENTLRKDIDISAAKTTLKRTSGTVEKQQERGRGVTYF-------- 443

Query: 481 SLREAALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              E   +  L+  P  +       +    + +  + +++  +                 
Sbjct: 444 --CERDFIAALVQLPEDVALNYTDNILPEYFHDRRMSEIYKKVLDVLENGDNINVLLSTP 501

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            + +     L+  L+  +  +                  ++ +        ++R+ ++  
Sbjct: 502 DIAKELSPVLVSDLNSDLYRSA--------------AASREKILANSVKDSMNRKIKDA- 546

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
                     + ++   L+        ++ +
Sbjct: 547 ---------SDMDEKRRLVIEKFNTKKKLQE 568


>gi|319957801|ref|YP_004169064.1| DNA primase [Nitratifractor salsuginis DSM 16511]
 gi|319420205|gb|ADV47315.1| DNA primase [Nitratifractor salsuginis DSM 16511]
          Length = 556

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 145/595 (24%), Positives = 235/595 (39%), Gaps = 53/595 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I+ L   I I ++IG Y++  +   N     Y   CPFH EKTPSF+ N  +  Y
Sbjct: 2   IDPSSIEALKQSIDIVDVIGNYLELKKAGAN-----YKCNCPFHGEKTPSFNVNPQRQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C V GD + F+      S+ E+++++AA+    L     K +  E  +     ++E
Sbjct: 57  HCFGCGVGGDAIKFVMEYEKLSYPEAIEKIAAMYNFSLRYTQGKGQYGEAKR-----VLE 111

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           +   F+   L      +   YL  RG+   +IE F +GY P     +      +  S   
Sbjct: 112 LMQQFYTSQL--DHQPQALEYLRSRGVTQSSIEDFGIGYVPGGEEVMAFL---RSRSIPL 166

Query: 183 IIEAGLLIDGDNSAT-SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            + A   I         Y R   R+ FPI S  G ++ FGGRTL      KY+NSP+T L
Sbjct: 167 PLAAEAGIVAQGERGEFYARLNRRVTFPIYSPAGALVGFGGRTL-GDHPAKYINSPQTRL 225

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+K + LY +  A  ++               +I+ EGY+DV+ L QAG +  V++LGTA
Sbjct: 226 FNKSRLLYGYHRAKEHIY----------HQKELIVCEGYLDVIMLHQAGFRTAVATLGTA 275

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT   L LL K  P I L +DGD  G+ AA KA  L+  H   G   + VL   G+DP  
Sbjct: 276 LTAEHLPLLRKGEPAITLAYDGDSAGVAAALKAARLLAPH---GFEGSVVLFPGGQDPAD 332

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +        +KL+    PL+  + ++       N P E+       ++ +  +    +R
Sbjct: 333 MVHQGDLQGLKKLLGSGTPLIPFVLEKIAAAHDLNNPREKERAFGEARSFLETL-SPIIR 391

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y       L      +    +   R  +     R ++ P+ +                
Sbjct: 392 ESYIPQAATLLGVHAALFTPGRNRNRRQEEFGTSTRSKEDPAWQ---------------- 435

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
               A+L TL+ +  ++ E    +        E Q+ +  L     E        I + +
Sbjct: 436 ----AILRTLLENERLIDEVLDLIDPRM--AGEYQEAFQALIQGEREHPRLRGIAIAEEV 489

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                    + L  Q+                +    +       +  +L R K+
Sbjct: 490 HPLDEEAFWRTLRAQMERFYRLKLQEITRNPRLPYQEKSYWIRKIKTDILPRLKK 544


>gi|297622869|ref|YP_003704303.1| DNA primase [Truepera radiovictrix DSM 17093]
 gi|297164049|gb|ADI13760.1| DNA primase [Truepera radiovictrix DSM 17093]
          Length = 609

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 152/638 (23%), Positives = 260/638 (40%), Gaps = 46/638 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
           P D  + +   + ++ ++G+ V           G     CPFH EKTPSFH    +GFYY
Sbjct: 2   PDDAKERIRERLDLAEVVGEVVALQSAGR----GRLKGLCPFHSEKTPSFHVLQDRGFYY 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C  KGD   F+       F E++Q L    G+ +    P+  KK      L  + ++
Sbjct: 58  CFGCQAKGDVFDFVMRTQNVDFYEALQLLGRRVGIEVTPSTPQGTKKRD----LYEINKL 113

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
           A  FF   L          YL  R +   ++E F LGYAPDS  +L +H   KGFS++ +
Sbjct: 114 ALAFFKAHLPGP----ARDYLLGRKLTPESLEAFDLGYAPDSWDALLKHALNKGFSDDDL 169

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
           + AGL I   +S   YDRFR+R++FPI+ + G+V+ F GR L      KYLN+PET +F 
Sbjct: 170 LRAGL-IAESDSGRRYDRFRHRVMFPIKDALGRVVGFSGRVL-DDALPKYLNTPETEVFK 227

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K + LY    A   ++           +   I+VEGYMDV++L Q G +N V++LG  LT
Sbjct: 228 KAELLYGLDVAKGAIR----------EAGECIVVEGYMDVIALHQCGFKNAVAALGATLT 277

Query: 304 EYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
             Q   L  +   R++L FD D+ G RA    ++  +        V  V +  G+DP   
Sbjct: 278 AEQAAQLARQGVERLLLAFDADEAGQRAVLSGLEQSVG---RNFLVRAVRVPFGKDPADA 334

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +      AF + +   L  V   ++R       +T + +      L   +          
Sbjct: 335 VLAGHVGAFREALRGGLSEVAFRFERVLARFDVSTLEGKKGALQELLPALTP-------- 386

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              + + D +    ++ + +H G              +          + +G+ + + ++
Sbjct: 387 ---RDVFDPVASEMRRLVIDHLGIDGARLDEWVRARTRRKLDTTQLKGMQRGEGASQRAI 443

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+  P  L E+ + L            L     +      +     +     
Sbjct: 444 IELEVIALLLLEPHRLAERLEVLEA-ALPEAGEDALLREFCAVCRACAFDDRAILRHYQA 502

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTE---ANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                 + ++L  Q                ++  +R+ Y       +R RLL R  +E+ 
Sbjct: 503 REEGRIVFERLLTQEAQQERRIDVDGHLHKSLSRLRELYLSDEKEAQRKRLLER-MQEVS 561

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
             +       +        + L E++  +   +++  +
Sbjct: 562 GYLTDPNLPTDQ--LQHYYAELREINAMLAARDAERRL 597


>gi|224437045|ref|ZP_03658026.1| DNA primase [Helicobacter cinaedi CCUG 18818]
 gi|313143517|ref|ZP_07805710.1| DNA primase [Helicobacter cinaedi CCUG 18818]
 gi|313128548|gb|EFR46165.1| DNA primase [Helicobacter cinaedi CCUG 18818]
          Length = 551

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 152/597 (25%), Positives = 255/597 (42%), Gaps = 57/597 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I+ L   I I ++IG  V+  +  +N     Y ACCPFHDEKTPSF  + +KGFY
Sbjct: 2   ISKHSIETLKQTIDILDVIGSVVELKKVGSN-----YVACCPFHDEKTPSFVVSPAKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +C+ C V GD + FL      SF+ESV+++AAI    L       +K +        L++
Sbjct: 57  HCYGCGVGGDSIKFLMEYEKLSFVESVEKIAAIMNFTLEYEKSYEKKPD------FTLLD 110

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               F+  +L N   K    YL  R + + +IE F LGY   S  +L+    +     E 
Sbjct: 111 EIARFYQKNLLNH--KPSLEYLSSRCVANSSIEKFALGYCGASFETLKFLNAKMLNKAEA 168

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    +  D       Y RF +R+IFPI S  G+V+ FGGRT+  G + KY+NSP++ +F
Sbjct: 169 LEYGVIGKDSTRE---YARFSDRIIFPIHSPSGKVVGFGGRTM-SGANAKYINSPQSKIF 224

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           +K K LY ++ A + + K  +          II+ EGY+DV+ L Q G    V++LGTAL
Sbjct: 225 NKSKLLYGYYIAKDKIYKQKK----------IIVCEGYLDVIMLHQVGFDYAVATLGTAL 274

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T+  L LL K  P+++L +DGD  G+ AA+KA  +       G     V+ + G DP   
Sbjct: 275 TKDHLPLLSKGEPKVILSYDGDKAGINAAFKAAKI---LAASGKDGGVVIFANGADPADM 331

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +          +    +  VD +     ++   N P E+ +        I+ +    L+ 
Sbjct: 332 VANKQVNELSDMFANPMRFVDFILSHIAKSYDLNNPLEKEKALTESTQFIHTL-SPVLQE 390

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   +   L        ++           A  +                        +
Sbjct: 391 EYKPTLAHLLSLPTHLIGSKRPVLHTPPAFTAPTQ-----------------------EI 427

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E+ L+ TL+  P  +    + +    +     ++ ++ L    VE    +   I++++ 
Sbjct: 428 AESVLVKTLLEKPRWIDFTLEYIDISLFAYK--REEFAKLLQQEVEHPLLIAIAINEKIK 485

Query: 543 E-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                  L + L   +  A     +       +    +  L    + ++L  +K E+
Sbjct: 486 PLNDLPSLKEHLRLFIIQAYTQFLSQIPRFEAMSLQEKGTLIKEVKTKILQLKKGEL 542


>gi|268680597|ref|YP_003305028.1| DNA primase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618628|gb|ACZ12993.1| DNA primase [Sulfurospirillum deleyianum DSM 6946]
          Length = 552

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 139/596 (23%), Positives = 247/596 (41%), Gaps = 54/596 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I++L   + I  +IG Y++  +   N     Y   CPFH++ +PS   + SK  Y
Sbjct: 2   IDKTSIENLKQRLDIVEVIGSYLELKKNGAN-----YKCVCPFHNDTSPSLVVSPSKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   GD + F+      S+ ES+++LA +    L        +KE  +     L+E
Sbjct: 57  HCFACGAGGDSIKFVMEYEKLSYPESIEKLANMVNFSLTYTTQNGAQKENRK-----LME 111

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               F+   L      +   YL +RGI    IE F++GYAP S  +L    +      E 
Sbjct: 112 NLNAFYVKELDKHLSAKN--YLSQRGISEAMIEKFEIGYAPSSFSTLDFLSKHAYTMSEA 169

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           I      I    +   Y RF  R+ FPI +   +++ FGGRTL      KY+NSP+T  F
Sbjct: 170 IEYGVAGI--GENNQPYARFIERVTFPIYAPSNKLVGFGGRTL-SNHPAKYVNSPQTKHF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           +K + LY +  A   + K             +I+ EGY+DV+ L QAG  + V++LGTAL
Sbjct: 227 NKSQLLYGYPLAKETIFK----------RKALIITEGYLDVIMLHQAGFTHAVATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L L+ +  P +++ +DGD+ G+ AA KA  L+  H + G     VL S+G DP   
Sbjct: 277 THEHLPLISRGDPEVIVAYDGDEAGINAALKASMLLSQHALRG---GVVLFSQGMDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++     A   L  +  P V+   +R  +  +   P  +          +  +  Q ++ 
Sbjct: 334 VQKGLLDALNHLFRKPQPFVEFALERMVKKHNLKDPLSKQNALEEAMAYLKTLP-QAVQE 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  + +RL         +     R  KK                             +
Sbjct: 393 SYTGLLSERLGLHHNLVKIQTHKPKRLEKKERVF-----------------------EDM 429

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++ T+++ P+++      +    +     Q+ +  L  +  E       E+ + + 
Sbjct: 430 LELTIIKTILSEPSLIDTVLDTIDSSMFKT--HQEEFMLLLENQREHPKLRRIELWEDIK 487

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                EL+  +   +            +  ++    +Q L    + +++  ++ E+
Sbjct: 488 IYDEKELIASMISFLYHYYSEKFQEIRSARELSYEKKQFLIRKIQEKMMKLKQGEL 543


>gi|152989961|ref|YP_001355683.1| DNA primase DnaG [Nitratiruptor sp. SB155-2]
 gi|151421822|dbj|BAF69326.1| DNA primase DnaG [Nitratiruptor sp. SB155-2]
          Length = 552

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 141/598 (23%), Positives = 251/598 (41%), Gaps = 65/598 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I+ L   + I ++IG Y++  +  +N     Y A CPFH E TPSF  + SK  +
Sbjct: 11  IDQNSIEQLKNIVDIVDVIGNYIELKKAGSN-----YKALCPFHQEDTPSFVVSPSKQIF 65

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + FL      S+ E++++LA +    L  +  K        ++L + +E
Sbjct: 66  HCFGCGAGGDAIKFLMEYEKLSYPEAIEKLAGMYNFSLQRIGSKESS-----SNLFKALE 120

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
                +   L +   K+   YL +RG+ +++IE F+LGYAP+    ++     K      
Sbjct: 121 SINRLYKKELFSK--KKALDYLKQRGVANNSIEKFELGYAPEGNTQIQYL---KKEFIPL 175

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                  I   +S   Y R   R+ FPI S  G ++ FGGRT+      KYLNSPET LF
Sbjct: 176 QDAIQTGILSQDSGRVYARLVERITFPIYSPNGALVGFGGRTI-TNHPAKYLNSPETKLF 234

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           HK K LY +  A   + K             +I+ EGY+DV+ L QAG QN V++LGTAL
Sbjct: 235 HKSKILYGYHLAKQEIYKK----------KELIVCEGYLDVVMLHQAGFQNAVATLGTAL 284

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  PR++L +DGD  G+ AA KA  +             V+ ++ +DP   
Sbjct: 285 TPSHLPLLRKGEPRVILAYDGDRAGIEAALKASKM---LTKADIEGGVVIFTQDQDPADM 341

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++       ++L  + +P V+ + ++  +      P E+ +      + +  +    L+ 
Sbjct: 342 VKKAQLQELQRLFAKPIPFVEFVLEKTVQKYDIKNPREKEKALFEGIDFLKTL-SPLLQE 400

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + +   L  L  K +                           Q         +    
Sbjct: 401 EYKEYLAALLNILPSKIVL------------------------HPQQKKDVNYTMEVHDP 436

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           +E +++ T++  P  +      +    +     Q+ +     + V+           ++ 
Sbjct: 437 KELSIIKTMLTKPHTVDIILDIIDASHFT--YHQEEFELTLQNRVDHP---------KIR 485

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                E +   + +   + L     +     +++  +      ++  L+ + KE I++
Sbjct: 486 SILLNEDILVFEEEHIRSELLVFLIKYYEQKIQEVVKGDFPFNQKSFLIRKYKENIKR 543


>gi|237736223|ref|ZP_04566704.1| DNA primase [Fusobacterium mortiferum ATCC 9817]
 gi|229421776|gb|EEO36823.1| DNA primase [Fusobacterium mortiferum ATCC 9817]
          Length = 601

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 151/635 (23%), Positives = 275/635 (43%), Gaps = 46/635 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I  L+  + I  ++G++V+  +   N     Y   CPFH + TPSF  + SK 
Sbjct: 1   MKYKSEDIDLLIDSLKIEEVVGEFVELKKSGAN-----YKGLCPFHPDTTPSFMVSPSKN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              CF C   G+ +SF S     SFIE+V+ L+    +P+  ++    K+++       +
Sbjct: 56  ICKCFVCGAGGNPISFYSQYKKISFIEAVEELSQKYAIPIKSLENNNLKQQESYEKYYEI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           ++ A  F+ +S+ + + +    YL  R ++   I+   LG+AP+    L ++L  KG+  
Sbjct: 116 MKEAHLFYKNSIFSNQGREALEYLSNRKLNPKVIKENGLGFAPNKWSELNDYLVSKGYES 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
           + +++ GL I   ++  +YD FRNR+IFPI S +G VIAFGGRTL K +   KY+NSP+T
Sbjct: 176 KDLLKLGL-IKEGDNGNNYDTFRNRIIFPIFSIKGDVIAFGGRTLEKDKETPKYINSPDT 234

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGKNLY    +   ++K           ++ +L+EGYMDVLS    G    ++ LG
Sbjct: 235 PIFKKGKNLYGLERS-GVIRKK----------NYAMLMEGYMDVLSAYLYGFDVALAPLG 283

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q  LL K +  I+L FD D PG  A  +A  ++      G  +  + L   +DP
Sbjct: 284 TALTEEQGVLLKKYTSNIILSFDSDGPGQSATERAGLILKSL---GFNIRILQLEGAKDP 340

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ +GK +F K +  S+ + D L+K   ++   N    +       K     ++ + 
Sbjct: 341 DEYLKQFGKESFLKCVKNSVEIFDFLFKYYLKDYDLNNMMSKQNFINRFKEFFQCVETEL 400

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y   +   +               R   +                 ++  G+ S+ 
Sbjct: 401 EKTLYLDRLSKEIDVDKNILKEILIDKNRKKSRKF----------EEDLVNINIGEKSEI 450

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +  E   L  ++      +    +           +K++ +L       +      + Q
Sbjct: 451 INRVEKDTLFLILAKREYFKYFSDKNIKGSLT----KKVFQYLIQHKEIDREDSTLNLSQ 506

Query: 540 --RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-------- 589
              L      +    +   + +        E         ++Q +    R          
Sbjct: 507 NLELTSEELEQWQLLICTLIENISNDKKIEELLTETFLSWFKQEIDSSYRKVKGMDLIEG 566

Query: 590 -LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
            LL+ + +++E ++++V +  E ++       +  
Sbjct: 567 LLLTNKIKQLEIKLSRVNSFDEIKEIYDNFKEIIN 601


>gi|218885599|ref|YP_002434920.1| DNA primase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756553|gb|ACL07452.1| DNA primase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 599

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 159/622 (25%), Positives = 265/622 (42%), Gaps = 40/622 (6%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
             ++ +   + +  +  +YV+            + A CPFH E  PSF  N+ +GF+YCF
Sbjct: 7   SVVQAIKARLNLVEVARRYVELRHTG----GPRWMAPCPFHQETKPSFSINEEEGFFYCF 62

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLIRLIE 122
            C   GD   F   + G  F E+++ LA  AGV L      DPK+++++  +   +R+ +
Sbjct: 63  GCQASGDIFDFYGRIHGLEFRETLEALAEEAGVSLEDDWKPDPKVQREQSFKRQCLRMYD 122

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           VA + F  +L     +    Y+  R +    +  F+LG++     +L + LR+ GF +  
Sbjct: 123 VAREHFRRNLTIPAGQECRDYIARRQLSPEIVNGFELGWSLREWSALADALRRGGFQQAD 182

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
             +AGLL   D     +DRFR R+IFPI++  GQVIAFGGR ++  +  KY+NS ++ ++
Sbjct: 183 AAQAGLLSRNDAG-RMFDRFRGRMIFPIKNLAGQVIAFGGRIIADEDQAKYINSSDSAIY 241

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG++LY  F A   +                +L EGYMDVL+L Q G       LGTAL
Sbjct: 242 KKGEHLYGLFQARRAM----------TQHKTAMLTEGYMDVLTLHQYGYNMACGVLGTAL 291

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q++ L      + L FDGD+PG +AA +A ++    L  G R   VLL  GED DS 
Sbjct: 292 TPEQVKRLGGFCSTVELLFDGDNPGRKAAMRACEM---LLTRGMRCKVVLLPDGEDIDSL 348

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-QKLR 421
           +   G+ AFE L   +   +D            +  D        L+       D Q L 
Sbjct: 349 LHDQGRDAFEALRKSAPDGLDFCIDTLRTLY--SPGDALEWSRNLLRQAGAGHADGQLLA 406

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             +   I   L    +      SG        A    ++  +    +           P+
Sbjct: 407 SRFLSRIASGLGIREEAIREGLSGDFYKGAAAAAPGAREARNPAPQRQVDAVHTSGDAPA 466

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            R+ A++  L+ +P      ++  A++   +   ++LW+ +     E     PE++   L
Sbjct: 467 KRDRAVMFFLVRYPHHFARLHEAGAELVLASPWARELWAKMARHGAE-----PEQLLPNL 521

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            ER      K+   + R   +     +  + +++       ++  R    S         
Sbjct: 522 SERE-----KEFWIRCRTGDVPP--RDKELEELQDLLSGIESVTTRELGTSSMMA----A 570

Query: 602 IAQVTAKGEAEKTAILISILHE 623
           + Q     +      L+  L E
Sbjct: 571 LRQTATSTDPAAGIELLRALQE 592


>gi|254372871|ref|ZP_04988360.1| DNA primase [Francisella tularensis subsp. novicida GA99-3549]
 gi|151570598|gb|EDN36252.1| DNA primase [Francisella novicida GA99-3549]
          Length = 605

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 158/607 (26%), Positives = 278/607 (45%), Gaps = 33/607 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                FIK+L+    I +++ +YV+  +   N     Y  CCPFH+EKTPSF  N  K F
Sbjct: 4   KVSNSFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   GD L+F+  +    FI++V+ LA I G P+       +  +KE++    I 
Sbjct: 59  YHCFGCQASGDALTFVKNINKLEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118

Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +  A  ++  +L N+  K +   YL +RGIDS   + F +GY+ +   ++ E  +    
Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELAKSINI 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            EE +++ GL I  D     YDRFR RL+FPIR+ +G VIA+GGR     + VKY+NSPE
Sbjct: 179 PEEILVDTGLAIKNDKG-NLYDRFRGRLMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K   LY  +      +K    D+   S   +++VEGYMDV+SL Q G    V++L
Sbjct: 238 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVSLAQHGFYAAVATL 292

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +    ++L++ +  ++LCFDGD+ G +AA + I ++L  L    ++  + L   +D
Sbjct: 293 GTAFSPNHAKILFRETSSVILCFDGDEAGKKAALRTIKILLPMLDGNKKLKILTLPNKDD 352

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I+ YG   F   +  SL + + +     + +     + +AE+  +LKN +  ++D 
Sbjct: 353 PDDYIKKYGLERFHTALGNSLAVAEFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDN 412

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                 +  I D++    +++        +      R ++ +                  
Sbjct: 413 IYSESITATIADKIGIKVEQFKNLLKIRKQTTVNVNRQQNIQQKKLAKNLLLEELVLAEL 472

Query: 479 KPSLREAALLL---------------TLINHPAILQE----QYQELADIRYDNNELQKLW 519
             ++ +  +L                 L     IL+E    Q + +  I+    +     
Sbjct: 473 FVNIADFRILQHTNDFEIFATSKNLDILAKSLKILKEDSSNQIEAVILIQLLTEDYPDYR 532

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
            + F           ++  +   +     +LK+++       L    +     DV++  +
Sbjct: 533 EYFFELLSYGIRNTQKKYAEDKYQEQMFVMLKRVENSSVKKRLKYLGSLPFRSDVQEMER 592

Query: 580 QALALYK 586
           + L    
Sbjct: 593 KYLVAKL 599


>gi|182416399|ref|YP_001821465.1| DNA primase [Opitutus terrae PB90-1]
 gi|177843613|gb|ACB77865.1| DNA primase [Opitutus terrae PB90-1]
          Length = 632

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 147/648 (22%), Positives = 261/648 (40%), Gaps = 47/648 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                ++DL + I +++++ + V   +             CPFH+EKTPSFH +  KGFY
Sbjct: 4   IKPSCVRDLKLRINLADVVSRVVALRKAG----GTRLKGLCPFHNEKTPSFHVDPEKGFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLIR 119
            CF C   GD ++F+      +F E+V+ L     + +   +       ++  ++ +L  
Sbjct: 60  KCFGCGKAGDVITFVRETEQLNFTEAVEALGKRFSIVIEYEEGSGGPTREERSLRQELFD 119

Query: 120 LIEVATDFFHHSLK--NARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           L +VA + FH + K  N   +    Y  E R   +   + FK+G A  S   L   L ++
Sbjct: 120 LHDVAAEHFHQAFKAANPAGEFFRTYWTEQRRFPAELADEFKIGGADASGSGLAAVLLKR 179

Query: 177 GFSEEKIIEAGLLIDGDNS----ATSYDRFRNRLIFPIRSSRGQVIAFGGRTL------S 226
            +SEE +   GL    +++         RFR RL+ PIR  +G+V+AF  R         
Sbjct: 180 RYSEEALRRCGLFFIYEDAALTLGALRPRFRGRLMIPIRDHQGRVVAFTARQTKLTPEDD 239

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
                KY+NSPET +F KG  L+N   A                    +LVEG +D L  
Sbjct: 240 PAREAKYVNSPETPIFTKGNLLFNLDRAR----------TNVGEGRPFVLVEGQLDALRC 289

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
              G++  ++  GT++TE QL LL +  P++   FD D  G +AA + + + L     G 
Sbjct: 290 WSVGLKTAIAPQGTSITESQLVLLRRYHPQVECFFDSDSAGQKAALRFLPMAL---KAGL 346

Query: 347 RVNFVLLSRGE--DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
            V F+ L   E  DPD      G  A+E++   +L  +         N    + ++++  
Sbjct: 347 EVRFLTLVGAEKLDPDVLFLERGLPAYEEVRRSALSAMAFACHAVLPNPGAVSAEQKSRA 406

Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
              +   I   + +  R  +       L+        ++  +     + A  R     S+
Sbjct: 407 AQSVFELIAAAESEVARSEFLAEASAHLRLSPAAMQKDYQTFAARQSRQAAARPANAESE 466

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL--QKLWSFL 522
                 +  G  +      E  LLL  +++  + +    +L    + +      +L +  
Sbjct: 467 AAAARPVEAGAAAP---TCERDLLLLCLHYEQLGKPLCGQLPH-DWIDPNHLPGRLLNRF 522

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            ++F    +   + +   L       L+  L      +         ++ D  +  +QAL
Sbjct: 523 LAEFENDTWPGRDHLDVLLETDEERALVAGLIFDTPTSDGTY----KDLGDPLRKAEQAL 578

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
              +R R L  Q  EIE  +A   A   ++    L+    ++  Q+ Q
Sbjct: 579 TELRR-RALEPQLREIELALATGRADSNSDPI-SLLKTRSDIQRQLRQ 624


>gi|309791530|ref|ZP_07686032.1| DNA primase [Oscillochloris trichoides DG6]
 gi|308226455|gb|EFO80181.1| DNA primase [Oscillochloris trichoides DG6]
          Length = 658

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 147/659 (22%), Positives = 266/659 (40%), Gaps = 67/659 (10%)

Query: 8   IKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYYCF 65
           I ++     I  +I    V+  +         +   CPFH + +TP+F        +YCF
Sbjct: 4   IDEVRAKTDIVEVISASGVNLRKTGR-----SFMGFCPFHPNTRTPAFAVYPDSQSFYCF 58

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
            CH  G    ++    G  F +++++LAA AGV L     +  +++  +T L+ +   A 
Sbjct: 59  GCHASGSVFDYVMRKQGLDFKDALEQLAARAGVRLEPKSDQERQEDTQRTRLLEINAAAA 118

Query: 126 DFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFSEEKI 183
            +F++  L ++R      Y+++RGI    +E F+LGY+ D    L  +  ++KGF    +
Sbjct: 119 KYFNYVLLSHSRGAPGRAYIEKRGISPEMVEAFQLGYSLDDWTHLFNYLTQKKGFDPADV 178

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
           I AGL ID   +   YDRFR R++FPIR ++GQ++ FGGR L      KYLNSPET LFH
Sbjct: 179 ITAGLAID-HATYGPYDRFRARVVFPIRDAKGQIVGFGGRALENEVQPKYLNSPETPLFH 237

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K   LY    A   ++          S    +LVEGY+DV++  Q G +NVV+ LGTA+T
Sbjct: 238 KSDLLYGLDLAREAIR----------SEDRAVLVEGYVDVITAHQHGFRNVVAPLGTAIT 287

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG------------------ 345
           + Q+ LL +LS  + +  D D  G +A  K + ++      G                  
Sbjct: 288 KNQVGLLKRLSHNVYMALDADSAGQKATVKGLSVLRESAEEGEGGRVVVTAQGAVRLESD 347

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             +  + +  G DPD  I+      +  L+  ++P+++   +  T     + P  +    
Sbjct: 348 VSLRIIRMPAGRDPDEVIKS-DPELWRHLLDSAVPVMEFYIEVFTAGLEMSEPQNQRLAL 406

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY-GRYWKKNARHRDQKGPSQ 464
             L   +    D   +  Y   +   +            G  GR   +  R    +  S+
Sbjct: 407 EKLLPLLAE-LDGVQQRIYISRLEQVVGIRADLIADMLRGGIGRIEPERRRPGVPRSESR 465

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD---IRYDN--------- 512
             + + +     +      E  L++  + +  ++    + L +    R+ +         
Sbjct: 466 PPVPAPVAPSMPANTARNMEQHLIVLALRYSTVVPAAIEALLEQGLERFPHLRGLLGGGL 525

Query: 513 ------NELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWS 564
                    Q++W+   +  + Q+     E+        +   E +  L +Q +      
Sbjct: 526 EDLLEDPANQQIWATFSTLPITQRPANEAELLIWAEHLAQPLREHITSLLKQAQRKPQDF 585

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
                     R      +   ++ R L R   +    +     +  AE+    ++    
Sbjct: 586 RYRREAEDCAR------IIRQEQARRLHRMMLQRIASMNAEEVEYSAERQLTALAQFIA 638


>gi|134287909|ref|YP_001110073.1| DNA primase [Burkholderia vietnamiensis G4]
 gi|134132559|gb|ABO60185.1| DNA primase [Burkholderia vietnamiensis G4]
          Length = 569

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 140/494 (28%), Positives = 217/494 (43%), Gaps = 33/494 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            +   F+ ++     +  ++GQ+V   +        D+   CPFH EK+PSF  +  K F
Sbjct: 6   RFADAFLDEVRERTDLVEVVGQHVKLKKGGK-----DFVGLCPFHTEKSPSFTVSPVKQF 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLI 118
           Y+CF C   G+  SFL+   G  F+ +VQ LA  AG+ +P            E     + 
Sbjct: 61  YHCFGCGAHGNVFSFLTEYSGYDFVSAVQELALRAGLSMPERSAPTAHALAAEARTARIG 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             ++ A   +  +L+N        Y+  RG+    +  F LGYA D      +     G 
Sbjct: 121 DALQRAQRTYFRNLRNCPGA--IGYMKGRGLTKATVVQFGLGYADDGHIHDWD-----GV 173

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           + + +  AGL+   D +   ++RFR RL+FPI + R ++I FGGR L      KYLNSPE
Sbjct: 174 AIDVLECAGLVAVDDETGVYHERFRRRLMFPIWNERSELIGFGGRVL-DDRQPKYLNSPE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F KG+ LY    A   ++               ++VEGYMDV+ L Q G    V+SL
Sbjct: 233 TEVFRKGEELYGLNFAKQSIR----------QGRLAVVVEGYMDVVMLHQHGDARAVASL 282

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LTE QLR L++++  +V CFDGD  G  AA +A  + +     G   +F+ L    D
Sbjct: 283 GTSLTEEQLRRLYRMADHVVFCFDGDKAGRAAADRAARVAIGITPDGKTASFLTLPGDHD 342

Query: 359 PDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PDSF+R +G  ++   +  E+ PL   L +     R     + RA         +  I  
Sbjct: 343 PDSFVREHGIDSWRAFVECEATPLSRKLIEMLLRGRDLEIAEHRAAFARDGIETLAVIGH 402

Query: 418 -QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               R      + +R+ Q+            R  ++       +  +Q      L+    
Sbjct: 403 APIFRAALQSEL-ERIAQM--ALSVPEVADARPNRRADAATHIRVQTQS--DVGLLPASN 457

Query: 477 SKKPSLREAALLLT 490
                 R A LL  
Sbjct: 458 RVAFYRRYALLLAL 471


>gi|256841931|ref|ZP_05547436.1| predicted protein [Parabacteroides sp. D13]
 gi|256736247|gb|EEU49576.1| predicted protein [Parabacteroides sp. D13]
          Length = 1322

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 138/482 (28%), Positives = 217/482 (45%), Gaps = 25/482 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+D I +++    I ++IG YV   +   N     Y   CPFH +K  S   + +K  +
Sbjct: 2   IPQDVIDNIINTANIVDVIGDYVKLKKAGVN-----YKGVCPFHGDKDASLVVSPAKNIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CF C   G+ ++F+    G SF E+V+ +A+   + +P         KK K +  L   
Sbjct: 57  KCFGCGKGGNVITFVKEHEGISFFEAVKLVASKYNITVPERELTDDERKKTKEREALQIC 116

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A + F   LK             RGI  + +  +  GY+     +L E   QKG+  
Sbjct: 117 LTFAQETFTAFLKKKEAAEYLET---RGITPNILSKYGAGYSSSMFTALTELGSQKGYDM 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             + +AGL I    +   +DRF NR+ FP  S  G VI F GR+L K    KYLNSPET 
Sbjct: 174 AAMEKAGL-ITRKENGKIFDRFVNRITFPFYSLSGLVIGFTGRSLEKDTQCKYLNSPETP 232

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LFHKGK L+  + A   + KS              LVEG  DVLS  Q+G  N V   GT
Sbjct: 233 LFHKGKTLFGIYQARQEISKS----------DKCYLVEGQFDVLSFVQSGYPNTVCGSGT 282

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT  Q+R++ K +  +   +DGD  G++A+ + +D++L     G  V  VLL  GEDPD
Sbjct: 283 ALTLDQVRIIKKFTRNVTAVYDGDAAGMKASVRNMDIMLAE---GMNVRAVLLPEGEDPD 339

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           SF R  G     K + +          +  E+   +    + E+   +   I+ + D+  
Sbjct: 340 SFARKMGTEKLAKFLKKQETDFISFIYKAFESEMDDPI-RKTEVLRIIAQSISVVPDKLQ 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y  ++ +R     +      +      KK+   +  +     + ++  +    +K+ 
Sbjct: 399 RQAYIVSLAERFNADGELITNLVAELQAVGKKSVPAQPTQPGLTGVEEAEELVKTGNKQV 458

Query: 481 SL 482
           +L
Sbjct: 459 TL 460


>gi|218262659|ref|ZP_03477026.1| hypothetical protein PRABACTJOHN_02705 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223256|gb|EEC95906.1| hypothetical protein PRABACTJOHN_02705 [Parabacteroides johnsonii
           DSM 18315]
          Length = 708

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 139/492 (28%), Positives = 230/492 (46%), Gaps = 28/492 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++ ++V   +R  N     Y   CPFH +K+PSF+ + +K   
Sbjct: 2   IDQPTIDRILDAANIVDVVSEFVTLRKRGIN-----YVGLCPFHSDKSPSFYVSPAKNIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CF+C   G  + F+      S+ ++++ LA    + +   +    +K+    +  ++ +
Sbjct: 57  KCFACGEGGTAVHFIMKHEQLSYYDALRYLAKKYNIEIQERELSEREKQVRSDRESMLIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A  +F   L   ++ +     Y  ERG     I  F+LGY+ D R +L +   + G+
Sbjct: 117 NSWAQKYFTTQLYEHQEGKAAGLRYFAERGFREDTIRKFQLGYSLDQRDALYKAATKSGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
            +  + + GL+I   ++    DRFR R+IFP+ S  G+V+AFGGR L K E   KY+NSP
Sbjct: 177 KKVFLEKTGLVI-TYDNGGVNDRFRGRVIFPVHSLSGKVVAFGGRVLKKDEKTAKYVNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK   LY  + A   + K+ R            LVEGY DV+S+ QAGV+NVV+S
Sbjct: 236 ESEIYHKSNELYGIYFAKQAIVKADR----------CFLVEGYTDVISMHQAGVENVVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT+ Q+RL+ + +  I + +DGD  G++AA + IDL    L  G  V  VLL  GE
Sbjct: 286 SGTALTQGQIRLIHRFTSNITVLYDGDAAGIKAALRGIDL---LLEDGMNVKVVLLPDGE 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R +  + F + I ++         R   + +   P +R+ L   +   +  I D
Sbjct: 343 DPDSFARKHNASQFAEFIRQNETDFIRFKTRLLLDDAGTDPIKRSALISDIIRTVAIIPD 402

Query: 418 QKLRYYYSQAIRDRLQQ----LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
              R  Y +     ++     L  +        G      +       P        +  
Sbjct: 403 NIARSLYIRECSAMMEIDEMLLLNEVNKIRLNKGERQTNTSPSSIPATPVNLPEYPDIPG 462

Query: 474 GKLSKKPSLREA 485
            +   + +L E 
Sbjct: 463 YQPYPEEALTEQ 474


>gi|206890478|ref|YP_002248857.1| DNA primase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742416|gb|ACI21473.1| DNA primase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 566

 Score =  301 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 165/628 (26%), Positives = 281/628 (44%), Gaps = 79/628 (12%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           +  ++++   + I  LI +Y+D  +   N     Y + CPFH EKTPSF  N SK  ++C
Sbjct: 4   QKVLEEIKHRLDIVELISEYIDLKKTGQN-----YKSLCPFHSEKTPSFFVNPSKQIFHC 58

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C   GD ++F+      SF+E++  LA   G+    V   I    K +  L  + E A
Sbjct: 59  FGCGKGGDIVTFVMEYEKVSFLEAISILAQKTGLEFESVKKSISHISKER--LYAIYESA 116

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
           T ++   L N+ + +   YL +RGI+   IE+F++GYAP  + SL   L++K F +  I 
Sbjct: 117 TRYYMEQLNNSENAKQ--YLIKRGINQKTIEIFQIGYAPAEKNSLYNFLKEKNFDDILIN 174

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPETILFH 243
            + L+        SYD FRNR+I PI    G+VI FGGR +    E  KY+NSP+T +F 
Sbjct: 175 SSRLVS------NSYDFFRNRIIIPIHDLTGRVIGFGGRLIDSSSELPKYINSPDTPIFK 228

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           KG+NL+  + +  +++             ++I+VEGYMDV+   Q G +NVV+ LGTALT
Sbjct: 229 KGENLFGLWHSKQHIR----------EKGYVIVVEGYMDVILCHQYGFKNVVAPLGTALT 278

Query: 304 EYQLR-------LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           + QL         L K + +I+L FDGD+ G+ AA +++   L     G     VLL   
Sbjct: 279 QEQLEKTKRILNNLKKFTNKILLIFDGDEAGIHAAQRSL---LPLFYGGFIAKIVLLPEK 335

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDP SF++ YG  AF+  I ++L  +D++ K   +N       +  E      N ++++K
Sbjct: 336 EDPASFLQKYGDKAFKNYISKALSPIDLIIKTYPKN-------KLNEGIHSFLNSLSYLK 388

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D   R    + + ++     +    E               + K                
Sbjct: 389 DLIYRDELLKELSEKTGINEKTLRDELKQIVHNKNFKKEKINIKN--------------- 433

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
               S  E  LL   +++P  +    Q++    ++   ++ ++S +  +  +   F   +
Sbjct: 434 -YLVSKEEEILLRIALSYPEKINYILQKINIEDFEVTIIRNIFSKI-EELQKHGQFSLNK 491

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +   + E      + +L            T+E +   + Q     L       +  + K+
Sbjct: 492 LLNIIDEEE-KTFISKL----------IMTSEIDEELIMQNMNDCLKSLAIKSIDKKIKK 540

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEV 624
                   +   G+ +    LI +   +
Sbjct: 541 --------IAKSGDEKTLQELIRMKKNI 560


>gi|254374326|ref|ZP_04989808.1| DNA primase [Francisella novicida GA99-3548]
 gi|151572046|gb|EDN37700.1| DNA primase [Francisella novicida GA99-3548]
          Length = 605

 Score =  301 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 155/595 (26%), Positives = 268/595 (45%), Gaps = 29/595 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                FIK+L+    I +++ +YV+  +   N     Y  CCPFH+EKTPSF  N  K F
Sbjct: 4   KVSNSFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   GD L+F+  +    FI++V+ LA I G P+       +  +KE++    I 
Sbjct: 59  YHCFGCQASGDALTFVKNINKLEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118

Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +  A  ++  +L N+  K +   YL +RGIDS   + F +GY+ +   ++ E  +    
Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELAKSINI 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            EE +++ GL I  D     YDRFR R++FPIR+ +G VIA+GGR     + VKY+NSPE
Sbjct: 179 PEEILVDTGLAIKNDKG-NLYDRFRGRVMFPIRNIQGSVIAYGGRVTEDSDGVKYINSPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K   LY  +      +K    D+   S   +++VEGYMDV+SL Q G    V++L
Sbjct: 238 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVSLAQHGFYAAVATL 292

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +    ++L++ +  ++LCFDGD+ G +AA + I ++L  L    ++  + L   +D
Sbjct: 293 GTAFSPNHAKILFRETSSVILCFDGDEAGKKAALRTIKILLPMLDGNKKLKILTLPNKDD 352

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I+ YG   F   +  SL + + +     + +     + +AE+  +LKN +  ++D 
Sbjct: 353 PDDYIKKYGLERFHTALGNSLAVAEFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDN 412

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                 +  I D++    +++        +      R ++ +                  
Sbjct: 413 IYSESITATIADKIGIKVEQFKNLLKIRKQTTVNVNRQQNIQQKKLAKNLLLEELVLAEL 472

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             ++ +  +L    N   I              +  L  L   L     +    +   I 
Sbjct: 473 FVNIADFRILQH-TNDFEIFA-----------TSKNLDILAKSLKILKEDSSNQIEAVIL 520

Query: 539 QRLCER---GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            +L       + E   +L              +     +    ++      + RL
Sbjct: 521 IQLLAEDYPDYREYFFELLSYGIRNTQKKYAEDKYQEQMLVMLKRVENSSVKKRL 575


>gi|208779305|ref|ZP_03246651.1| anticodon nuclease activator family protein [Francisella novicida
           FTG]
 gi|208745105|gb|EDZ91403.1| anticodon nuclease activator family protein [Francisella novicida
           FTG]
          Length = 605

 Score =  301 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 156/595 (26%), Positives = 268/595 (45%), Gaps = 29/595 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                FIK+L+    I +++ +YV+  +   N     Y  CCPFH+EKTPSF  N  K F
Sbjct: 4   KVSNSFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   GD L+F+  +    FI++V+ LA I G P+       +  +KE++    I 
Sbjct: 59  YHCFGCQASGDALTFVKNINKLEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118

Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +  A  ++  +L N+  K +   YL +RGIDS   + F +GY+ +   ++ E  +    
Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELAKSINI 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            EE +++ GL I  D     YDRFR RL+FPIR+ +G VIA+GGR     + VKY+NSPE
Sbjct: 179 PEEILVDTGLAIKNDKG-NLYDRFRGRLMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K   LY  +      +K    D+   S   +++VEGYMDV+SL Q G    V++L
Sbjct: 238 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVSLAQHGFYAAVATL 292

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +    ++L++ +  ++LCFDGD+ G +AA + I ++L  L    ++  + L   +D
Sbjct: 293 GTAFSPNHAKILFRETSSVILCFDGDEAGKKAALRTIKILLPMLDGNKKLKILTLPNKDD 352

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I+ YG   F   +  SL + + +     + +     + +AE+  +LKN +  ++D 
Sbjct: 353 PDDYIKKYGLERFHTALGNSLAVAEFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDN 412

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                 +  I D++    +++        +      R ++ +                  
Sbjct: 413 IYSESITATIADKIGIKVEQFKNLLKIRKQTTVNVNRQQNIQQKKLAKNLLLEELVLAEL 472

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             ++ +  +L    N   I              +  L  L   L     +    +   I 
Sbjct: 473 FVNIADFRILQH-TNDFEIFA-----------TSKNLDILAKSLKILKEDSSNQIEAVIL 520

Query: 539 QRLCER---GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            +L       + E   +L              +     +    ++      + RL
Sbjct: 521 IQLLAEDYPDYREYFFELLSYGIRNTQKKYAEDKYQEQMLVMLKRVENSSVKKRL 575


>gi|332881873|ref|ZP_08449516.1| DNA primase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332680217|gb|EGJ53171.1| DNA primase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 710

 Score =  301 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 156/691 (22%), Positives = 278/691 (40%), Gaps = 82/691 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             R  +  ++    I +++  +V   +   N     Y   CPFHD++TPSF  + SKG  
Sbjct: 2   IDRATVDRIMDAAQIVDVVSDFVTLRKAGVN-----YKGLCPFHDDRTPSFVVSPSKGLC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CF+C   G+ + F+      S+ ++++ LA    + +       + ++ +  +  +  +
Sbjct: 57  KCFACGKGGNAVHFIMEHEQLSYPDALRYLARKYNIEIKERELTEEEKQAQDERESMFVV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            E A  FF   L N  D R     Y   R      I+ F+LGY+P  R +     + KG+
Sbjct: 117 NEWACQFFQDQLYNTVDGRAIGMTYFRSRSFRDDIIKKFQLGYSPSQRDACAREAKAKGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235
            EE ++  GL    DN     DRF  R+IFP+ +  G+V+AFGGR L    KG +VKY N
Sbjct: 177 KEEFLLSTGLCYKRDNG-QLQDRFFGRVIFPVHTLSGKVVAFGGRVLDAATKGVNVKYQN 235

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ ++ K K LY  F A   + K               LVEGY DV+S+ Q GV+NVV
Sbjct: 236 SPESAIYSKKKELYGLFLAKQAIVK----------HDLCFLVEGYTDVISMHQMGVENVV 285

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           SS GTALT  Q+R++ + +  I + +DGD  G++A+ + ID+    L  G  V  +LL  
Sbjct: 286 SSSGTALTTEQIRMIHRFTENITVLYDGDAAGIKASERGIDM---LLAEGMNVKLLLLPD 342

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+DPDSF R +  T ++  + E              + +   P + + L   + + I+ I
Sbjct: 343 GDDPDSFARKHNATEYQAYLNEHQVDFIKYKTDLLLHEAQGDPIKLSRLISSIVHTISVI 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQ----------KYITEHSGYGRYWKKNARHRDQKGPSQR 465
            D+  R  Y++     L    +              E     R  ++N ++       Q 
Sbjct: 403 PDEITRSVYTRETATMLNMEERMLVAAISKEMAQAKEEKQKQRENERNRKNAQLPSSGQA 462

Query: 466 LMQSSLVKGKLSKKPSLREAALLLT---------------LINHPAILQEQYQE------ 504
           L   +             E  +                    N+PAI +           
Sbjct: 463 LSSLNQDSLPPPAPFPPSEEGIPPIPDDGTPTDTPVPNTSSGNNPAITENVSTLSYIPGK 522

Query: 505 -LADIRYDNNEL----------QKLWSFLFSDFVEQKYFLPEEIHQR------------L 541
               + +   EL          +K+  +  ++  E+      E                L
Sbjct: 523 GAEAMLFYRKELLLVQVLIRYGEKIICYAENEQGEEVPVSVAEFIDYALQEDGLLFHNAL 582

Query: 542 CERGFGELLKQL-DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            +R   E +  + ++       +    + +I  +            ++    ++    E+
Sbjct: 583 HKRILQEAIDHIHEKDFSSERYFLNHPDNHISMLAFELSGDKYQLSKYHSKHQKIASDEE 642

Query: 601 QIAQVTAKGEAEKTAILI-SILHEVHIQIHQ 630
           ++ ++     ++    ++   L ++ +++ Q
Sbjct: 643 RLTELVPHLISDFKLAIVDEELKQILLKLRQ 673


>gi|313886698|ref|ZP_07820408.1| DNA primase [Porphyromonas asaccharolytica PR426713P-I]
 gi|332300029|ref|YP_004441950.1| DNA primase [Porphyromonas asaccharolytica DSM 20707]
 gi|312923860|gb|EFR34659.1| DNA primase [Porphyromonas asaccharolytica PR426713P-I]
 gi|332177092|gb|AEE12782.1| DNA primase [Porphyromonas asaccharolytica DSM 20707]
          Length = 676

 Score =  301 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 153/696 (21%), Positives = 285/696 (40%), Gaps = 82/696 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                 + ++    I +++  +V   R+ +      +   CPFH ++ PSF    SK   
Sbjct: 2   IDEQTKQLIIDTARIEDVVSDFVQLRRKGSG-----FVGLCPFHKDRHPSFIVTPSKNIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CF+C   G  +SF+  +  CSF+E+++ LA    +P+P      + ++++  +  L   
Sbjct: 57  KCFACGAGGTPISFIMKIQNCSFVEALRYLAQKYNIPMPEREMTEEEQQRKNEREALYLA 116

Query: 121 IEVATDFFHHSLKNARDK--RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            EVA  FF   L ++ +       Y  +RG+ S AI+ F LGY+P  R +L +++ + G+
Sbjct: 117 NEVAAKFFTEQLLSSEEGLDIALPYFTQRGVRSEAIQAFGLGYSPSDRRALAKYVEEHGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237
             E  +  GLL        S DR+  R+IFPI +  G+V+ FGGRT+ K  +  KY+NSP
Sbjct: 177 DMESFVATGLLYAPSEGRPSGDRYHERVIFPIYNVGGRVVGFGGRTMRKADKIAKYINSP 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+I++ K + LY  + A   + +  R           I+VEGY+DV+++ Q G++NVV++
Sbjct: 237 ESIIYDKSRELYGLYQAKQAIGRLDRS----------IIVEGYLDVIAMHQVGIENVVAT 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALTE Q++LL + S  +++ FDGD+ G++AA ++ID+    L  G ++  ++L  GE
Sbjct: 287 SGTALTESQIQLLRRFSRNVLVLFDGDEAGVKAALRSIDM---LLAEGMQIKLLVLPDGE 343

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD F+    +T  E+              +    +  + P  + +L   +   I  I D
Sbjct: 344 DPDEFVAKRSRTEVEEYFAAHEQDFLTFKSQLYAPQMASDPQLKTQLMRDILQSIATIPD 403

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R  Y Q +           + +         +  ++      +           ++S
Sbjct: 404 SLERIVYIQQMSQMYGVAEDLLLQQIKQERFSRGRVYQYAPPAAATPEERAPEETPQEVS 463

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ----------KLWSFLFSDFV 527
              +      L  +     ++    +    I   + E             + +F++ +  
Sbjct: 464 PLDAPMSNEALDLV----RLVVRYGERKLKISVQDEEAGEGAEPMVIQVAVANFVYQELK 519

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLD--------------------------------- 554
           +    +   + +R+       +L++L                                  
Sbjct: 520 QDDIVIEHPLVKRILNDSNKMMLEELSDSEDGESKHRCGSFLCNSEVPQVAALAVDLYAT 579

Query: 555 --RQVRDAGLWSATTEANIVDVRQGYQQA-----LALYKRFRLLS--RQKEEIEKQIAQV 605
             R  R A       + +   V   + +      L  YK        +Q  +  + + Q 
Sbjct: 580 PYRLSRKAREELQMPDDDDEKVPDEWVRDMTFKVLYTYKLAYAEEHCQQISQQIQALQQE 639

Query: 606 TAKGEAEKTAILISIL---HEVHIQIHQIESQEAMI 638
             + + E    L+  L    E+     Q   Q  +I
Sbjct: 640 HPEADYESYQPLLQELSTWQEIRKAFAQFSGQRVVI 675


>gi|225848842|ref|YP_002729006.1| DNA primase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644203|gb|ACN99253.1| DNA primase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 559

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 148/598 (24%), Positives = 278/598 (46%), Gaps = 42/598 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    D ++++     + ++I  Y++  R+ +      Y A CPFH+EKTPSF  + +K 
Sbjct: 1   MAISPDTVEEVNRVANVYDVISDYLNLKRQGSV-----YVALCPFHNEKTPSFVVSPTKN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            + CF C + G+ + F+      S+ ++V +LA    +P+  +D    +KEK+   L   
Sbjct: 56  IFKCFGCGISGNAIKFVMEYEKISYFDAVVKLAQKYNIPIKYLDS---EKEKLNKGLYLT 112

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             + T+F+  +LK +  +    YL  RGI S  IE F+LGY+P+    L++++++K    
Sbjct: 113 TRIITEFYKENLKKS--QVCKDYLKNRGILSRTIEEFELGYSPEDNSILQKYIQEKNVPL 170

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E + + GL+   D+     D+F  RLIFPI+  +G ++AFGGR+L      KYLNSPET+
Sbjct: 171 EDLEKIGLITKTDSLFK--DKFSGRLIFPIKDVKGNIVAFGGRSLDNTRQPKYLNSPETV 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++ KG  LY  + +L +L+              +++VEGYMD++SL Q G++NVV++LGT
Sbjct: 229 IYKKGNTLYGIYQSLEHLK----------EKQSVVIVEGYMDLISLYQIGIKNVVATLGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T+ Q +LL K     V+ FD D+ G +AA   I+     L  G  V +      +DPD
Sbjct: 279 AFTKNQAKLLKKYVKEAVVMFDSDEAGKKAA---IEAAKILLSEGITVRYAYYKEAKDPD 335

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE---RAELEIHLKNCINHIKD 417
              +  G +  +++I  S  ++  L +R    +  +   +      +  ++   + +I+D
Sbjct: 336 ELSK-QGLSKVKQVIENSKDIIIFLLERLKSIQDSDIKTQLKSYQTIYDYITKILAYIED 394

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             LR  Y + +     + F     +        K+     +                 + 
Sbjct: 395 PSLRNSYIEIVAKYTGRSFANVELDIEKVRILTKRERGSFNYNYTDDEST-------SIK 447

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            K +++E  +L  ++ +P  LQ+   +  DI   +  L     +           + +E+
Sbjct: 448 PKLNMKEEIVLKYILENPDFLQKY--DFYDIISVSENLG----YYVQLINSGNTQVIQEL 501

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            Q L +       + + + + D        + ++       +  + ++   + L R++
Sbjct: 502 SQILNQHNISATEETVLKILEDFRQEWIKKQKSLAISNLSERDFIDIFNEIKTLKRRR 559


>gi|317056181|ref|YP_004104648.1| DNA primase [Ruminococcus albus 7]
 gi|315448450|gb|ADU22014.1| DNA primase [Ruminococcus albus 7]
          Length = 598

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 131/629 (20%), Positives = 244/629 (38%), Gaps = 38/629 (6%)

Query: 4   PRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            ++F++ L    PI+ ++ +  V+            Y   CPFHD+ T S     S+GF+
Sbjct: 2   DQEFLEKLKYENPINEVMRENGVELKTSGRG-----YMCKCPFHDDSTASCSVVPSQGFF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C V GD ++F+       F+++V  LA  AG+ +P      +K  K +  +  + +
Sbjct: 57  HCFGCGVSGDVVTFIRKYRNLGFMDAVNFLAQRAGMTVPTWQGADDKSYKRRMRIYEMNK 116

Query: 123 VATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A  FF   LK     R   Y +  R + +  I+ + +G+AP S  +L+ ++   G+SE+
Sbjct: 117 CAARFFRDQLKTQDGLRCLNYLVHTRKLSADVIKKYGMGFAPKSFTALKSYMLSCGYSED 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL----NSP 237
           +++ A LL     S  +YD F +R +FP     G ++ FGGRTL   +          S 
Sbjct: 177 ELVSASLLGRSQTSGRTYDFFMDRAMFPFIDVTGNIVGFGGRTLGDDKRKYLNTGDTTSE 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E    +  K L  +  A                S  ++L EG +DV+SL Q G  N V+S
Sbjct: 237 EFRRTNDEKKLDGYSKARFVFS-LNYAKDVSVKSRELLLCEGNLDVISLYQHGFTNAVAS 295

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT  Q++++   + ++V+C+D DDPG +AA +A+ +       G   + + +   +
Sbjct: 296 CGTALTPEQVKVMKNYADKVVICYDADDPGQKAALRAVGM---LRSGGLGSSVIHMEGAK 352

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +I  +G+  F  L+  +    D      +        D++          I    D
Sbjct: 353 DPDEYINKFGEDHFRYLLNNAADGFDFELGYYSRGLDLEKRDDKIRFLKMAYTSIAGEPD 412

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R    + + ++    F                  R   Q+   ++ + +        
Sbjct: 413 STARDTMERQLSEQYNVSFDVVRASVDDIMMREMDTQRRAKQREEVRKTIATEEESAANK 472

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  L+  +  +    QE  Q ++   + +   +K+   +            + I
Sbjct: 473 AVYC--ERGLIYYICTNADSAQEIGQRISPEEFTDELNRKILLEISGRIALGDIVSLDVI 530

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            + L E     L +   +                 +V Q Y  ++  Y +     ++   
Sbjct: 531 CETLTEEEADRLKRSFTKYAGLNVTR---------EVAQQYIDSIKEYNKKNAPQQE--- 578

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHI 626
                       + +    ++  L     
Sbjct: 579 --------DGLTDKD-YLRMMEELRRKKR 598


>gi|293604555|ref|ZP_06686960.1| DNA primase [Achromobacter piechaudii ATCC 43553]
 gi|292817136|gb|EFF76212.1| DNA primase [Achromobacter piechaudii ATCC 43553]
          Length = 688

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 140/454 (30%), Positives = 230/454 (50%), Gaps = 27/454 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI+DLL  + + +++G+YV   +   N +       CPFH+EK+PSF  + +K FY
Sbjct: 2   IPESFIQDLLARVDVVDVVGRYVQLRKGGANLL-----GLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD------PKIEKKEKIQTD 116
           +CF C   G  ++FL    G SF E+V+ LAA AG+ +P  +       +  ++   ++ 
Sbjct: 57  HCFGCGAHGSAITFLMEHTGTSFPEAVRTLAASAGMTVPEENRSPRQQQESARRRAEESR 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             ++++ A   +   L+ +       YL +RG+       F LG++   R+ L +     
Sbjct: 117 HTQVLDAAQAHYLKQLRASPAA--IRYLKQRGLTGEIAAHFGLGWSGTDRHGLSQVF--P 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            + +  ++E+GL+I+ ++    YDRFR R++FPIR++RG +I FGGR + KGE  KYLNS
Sbjct: 173 NYEDPTLVESGLVIESEDGRR-YDRFRERVMFPIRNARGSLIGFGGRIIGKGEP-KYLNS 230

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET LF KG  LY  + A   ++              +I+VEGYMDV+ L Q G+ N V+
Sbjct: 231 PETPLFSKGHELYGLWEARLAIR----------QEGQVIVVEGYMDVVGLAQQGIANAVA 280

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   ++ L + S +++  FDGD  G RAA++A+   L  L     + F+ L   
Sbjct: 281 TLGTATTPDHVKKLLRASDKVIFSFDGDGAGRRAAWRALQACLPVLRDDIAIRFLFLPTE 340

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPDS++R  G  AF   + +++ L   L        + N  + RA      K  +  I 
Sbjct: 341 HDPDSYVRELGAEAFRACLSDAVALSRFLLDELASRHNMNEAEGRASCLHEAKPLLAAIP 400

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
           +  LR    + +   +Q   ++     +      
Sbjct: 401 ECALRVQIEREMAKLVQLTPEEMSQILAQQPAKP 434


>gi|169796976|ref|YP_001714769.1| DNA primase [Acinetobacter baumannii AYE]
 gi|213156618|ref|YP_002318280.1| DNA primase [Acinetobacter baumannii AB0057]
 gi|215484437|ref|YP_002326670.1| DNA primase [Acinetobacter baumannii AB307-0294]
 gi|301346837|ref|ZP_07227578.1| DNA primase [Acinetobacter baumannii AB056]
 gi|301511993|ref|ZP_07237230.1| DNA primase [Acinetobacter baumannii AB058]
 gi|301594461|ref|ZP_07239469.1| DNA primase [Acinetobacter baumannii AB059]
 gi|332855564|ref|ZP_08435938.1| DNA primase [Acinetobacter baumannii 6013150]
 gi|332868377|ref|ZP_08438123.1| DNA primase [Acinetobacter baumannii 6013113]
 gi|169149903|emb|CAM87796.1| DNA primase [Acinetobacter baumannii AYE]
 gi|213055778|gb|ACJ40680.1| DNA primase [Acinetobacter baumannii AB0057]
 gi|213986966|gb|ACJ57265.1| DNA primase [Acinetobacter baumannii AB307-0294]
 gi|332727388|gb|EGJ58821.1| DNA primase [Acinetobacter baumannii 6013150]
 gi|332733436|gb|EGJ64617.1| DNA primase [Acinetobacter baumannii 6013113]
          Length = 621

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 163/681 (23%), Positives = 276/681 (40%), Gaps = 119/681 (17%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+  I  +L    I +LIGQ V   +         Y  CCPFH EKTPSFH    K 
Sbjct: 1   MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115
           +Y+CF C   G+ + FL  +   +FI+ ++ L+   GV LP  +   +K    +      
Sbjct: 56  YYHCFGCQANGNAIRFLMDIDNRNFIDVMKELSGNTGVELPKDNTDNKKLSYTRQVTKPS 115

Query: 116 -----------------------------------------------DLIRLIEVATDFF 128
                                                          +L  L+E    F+
Sbjct: 116 TPPKTVAEPTTQAPIEDQYNTFEPVYFDDPFAQFEQPFSFDGPVQEGNLYDLLENVAQFY 175

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
            H L     ++   Y  +RG+    I+ ++LGYAP+       HL +    + + ++   
Sbjct: 176 EHQL--PTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQ----HLEKAFPYDIEGLKQLG 229

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
           LI   +S   +D  R+R+IFPIR  +G+V+ FGGR L+     KY+NSP++ +FHK + L
Sbjct: 230 LIRSSDSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLL 289

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           Y  +                  ++  ++VEGYMDV++L Q G+   V++LGTA     L 
Sbjct: 290 YGLYEGRKL------------KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHLN 337

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
           +L+K + RI + FDGD  G +AA + +++ L  L  G  + F +L    DPDS IR  G 
Sbjct: 338 ILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREGV 397

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQA 427
             F+KL+ ++  L D ++   T     +TP+ ++ +   L+     +      RY  +Q+
Sbjct: 398 ENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLTQS 457

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            R++L                        R     S     S  ++ K        E   
Sbjct: 458 FREKLGL--------------------GKRFTPQISHDASLSFNIQTKD-------EDFA 490

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           +  L++HP  L   ++ L      +  L K+ + L   F E      +E+          
Sbjct: 491 IAILMHHP-FLYIHFEGLRAYIPQDELLAKILAILNRIFDELP--DDQELATYYVLGACS 547

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
               ++   ++   + +        +V     +  AL  + R L ++ +     +     
Sbjct: 548 TYCHEIADIMQRTNIQAL---TQAPEVADKLAKEYALGLQERYLRQKLKSKISLV----- 599

Query: 608 KGEAEKTAILISILHEVHIQI 628
                ++  L   L+E+  QI
Sbjct: 600 -----ESRNLRQQLNELTKQI 615


>gi|154494837|ref|ZP_02033842.1| hypothetical protein PARMER_03879 [Parabacteroides merdae ATCC
           43184]
 gi|154085387|gb|EDN84432.1| hypothetical protein PARMER_03879 [Parabacteroides merdae ATCC
           43184]
          Length = 708

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 138/492 (28%), Positives = 229/492 (46%), Gaps = 28/492 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++ ++V   +R  N     Y   CPFH +K+PSF+ + +K   
Sbjct: 2   IDQPTIDRILDAANIVDVVSEFVTLRKRGIN-----YVGLCPFHSDKSPSFYVSPAKNIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CF+C   G  + F+      S+ ++++ LA    + +   +    +K+    +  ++ +
Sbjct: 57  KCFACGEGGTAVHFIMKHEQLSYYDALRFLAKKYNIEIQERELSEREKQVRSDRESMLIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A  +F   L   ++ +     Y  ERG     I  F+LGY+ D R +L +   + G+
Sbjct: 117 NSWAQKYFTTQLYEHQEGKAAGLRYFAERGFREDTIRKFQLGYSLDQRDALYKAATKSGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
            +E + + GL+I   ++    DRFR R+IFP+ +  G+V+AFGGR L K E   KY+NSP
Sbjct: 177 KKEFLEKTGLVI-AYDNGGVNDRFRGRVIFPVHTLSGKVVAFGGRVLKKDEKTAKYVNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK   LY  + A   + K+ R            LVEGY DV+S+ QAGV+NVV+S
Sbjct: 236 ESEIYHKSNELYGIYFAKQAIVKADR----------CFLVEGYTDVISMHQAGVENVVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT+ Q+RL+ + +  I + +DGD  G++AA + IDL    L  G  V  VLL  GE
Sbjct: 286 SGTALTQGQIRLIHRFTSNITVLYDGDAAGIKAALRGIDL---LLEDGMNVKVVLLPDGE 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R +  + F + I ++         R   + +   P +R+ L   +   +  I D
Sbjct: 343 DPDSFARKHNASQFAEFIRQNETDFIRFKTRLLLDDAGTDPIKRSALISDIIRTVAIIPD 402

Query: 418 QKLRYYYSQAIRDRLQQ----LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
              R  Y +     ++     L  +                       P        +  
Sbjct: 403 NIARSLYIRECSTMMEIDEMLLLNEVNKIRLNKEERQANTPSSPIPATPINIPEYPDIPG 462

Query: 474 GKLSKKPSLREA 485
            +   + +L E 
Sbjct: 463 YQPYPEETLAEQ 474


>gi|291277102|ref|YP_003516874.1| DNA primase [Helicobacter mustelae 12198]
 gi|290964296|emb|CBG40146.1| DNA primase [Helicobacter mustelae 12198]
          Length = 572

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 148/598 (24%), Positives = 267/598 (44%), Gaps = 38/598 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I+ L     I +++G Y++  R  +N     + ACCPFH EKTPSF  + SK  Y
Sbjct: 2   IKASSIEALKQQADIIDILGNYIELKRAGSN-----FSACCPFHQEKTPSFIISPSKNLY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +C+ C V GD + F+       FIE+V+++A ++   L       + K+  +     + E
Sbjct: 57  HCYGCGVGGDVIKFVMEYEKIPFIEAVEKIAELSHFTLEYETSHQKPKQHTEE--YEIFE 114

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               FF  +L       +  YL  RGI + ++  F LGY  +S   ++   + +   +  
Sbjct: 115 RFIHFFGDTLAKEPG--ILAYLQRRGISAQSMRDFSLGYCGNSFEVVKFCDQLRLEKKNL 172

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +   GL I G +    Y RF  R+IFPI S  G  + FGGRTL +  + KY+NSP++ LF
Sbjct: 173 V---GLGILGQSDGRYYARFAERIIFPIHSPAGNPVGFGGRTL-RDHAAKYINSPQSQLF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           +K K LY +  A  ++ +             II+ EGY+DV+ L QAG +  V++LGTAL
Sbjct: 229 NKSKLLYGYHIAKEFIYR----------ERTIIITEGYLDVIMLHQAGFRTAVATLGTAL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T+  L LL K  P+I+L +DGD  G+RAAY+A  ++      G     V+   G DP   
Sbjct: 279 TQEHLPLLNKGEPKILLGYDGDSAGIRAAYRASFMLANLKKEG---GVVIFQNGMDPADM 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++    +  ++L    +P ++ + ++         P ++ +      + ++ +    L+ 
Sbjct: 336 VQKNQISDLKELFSHPMPFIEFVLRQIPLQFDLTNPLQKEQALKQQLDFLHTL-SPLLQE 394

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I + LQ       T+ +      ++N        P                + S 
Sbjct: 395 EYKALISNLLQISPSLIPTKPT----KHQENFPSSRSSKPGYSPTLYGNGGLGFLHQESQ 450

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL- 541
            E  ++  ++  P++L    Q +    + +   ++ +  L +  ++    +   I+ +L 
Sbjct: 451 LEELIIRYILETPSLLDLALQYIDAEIFQHQ--KQAFCALLAKNLDHPSLIGIRINPKLI 508

Query: 542 -CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               GF   L+ L  +   + L S   E  +   ++ ++       +  +L  ++ E+
Sbjct: 509 TTPHGFRNELRLLILRYNTSLLNSIQKERALSFEQKSFR---IRKIKNHILKLKQGEL 563


>gi|293609058|ref|ZP_06691361.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829631|gb|EFF87993.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 622

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 163/684 (23%), Positives = 275/684 (40%), Gaps = 124/684 (18%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+  I  +L    I +LIGQ V   +         Y  CCPFH EKTPSFH    K 
Sbjct: 1   MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115
           +Y+CF C   G+ + FL  +   +FIE ++ L++  G+ LP  + + +K    +      
Sbjct: 56  YYHCFGCQANGNAIRFLMDIDNRNFIEVMKELSSSTGIELPKDNTENKKLSYTRQVTKPP 115

Query: 116 ------------------------------------------------DLIRLIEVATDF 127
                                                           +L  L+E    F
Sbjct: 116 VTKTNTAEPVTSQQPSDESYNTLEPVFFDDPFAQFEQPFSFDEPVQEGNLYDLLENVAQF 175

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
           +   L     ++   Y  +RG+ +  I+ ++LGYAP+       HL +    +   ++  
Sbjct: 176 YEQQL--PHSQKAKNYFKQRGLTNQTIQFWRLGYAPEDWQ----HLEKAFPYDIDGLKQL 229

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247
            LI   ++   +D  R+R+IFPIR  +G+V+ FGGR L+     KY+NSP++ +FHK + 
Sbjct: 230 GLIRSSDNGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQL 289

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           LY  +                  SS  ++VEGYMDV++L Q G+   V++LGTA     L
Sbjct: 290 LYGLYEGRKL------------KSSDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 337

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
            +L+K + RI + FDGD  G +AA + +++ L  L  G  + F +L    DPDS IR  G
Sbjct: 338 NILFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 397

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQ 426
              F+KL+ ++  L D ++   T     +TP+ ++ +   L+     +      RY  +Q
Sbjct: 398 LENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLTQ 457

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
           + R++L                        R     S     S  +  K        E  
Sbjct: 458 SFREKLGL--------------------GKRFTPQISHDASLSFNIHTKD-------EDF 490

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +  L++HP +       LA I+  +  L K+   + +   +      E     +     
Sbjct: 491 AIAILMHHPFLYIHFEGLLAYIQ-QDELLAKVL-AILNRIFDDLPDDQELATYYVLGACS 548

Query: 547 G--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                +  + ++     L  A       +V     +  +L  + R L ++ +     I  
Sbjct: 549 SYCHEIADIMQRTNIQALTQAP------EVADKLAKEYSLSLQERYLRQKLKSPISLI-- 600

Query: 605 VTAKGEAEKTAILISILHEVHIQI 628
                   ++  L   L+E+  QI
Sbjct: 601 --------ESRNLRQQLNELTKQI 616


>gi|21672346|ref|NP_660413.1| DNA primase [Buchnera aphidicola str. Sg (Schizaphis graminum)]
 gi|22654277|sp|P32000|PRIM_BUCAP RecName: Full=DNA primase
 gi|21622949|gb|AAM67624.1| DNA primase [Buchnera aphidicola str. Sg (Schizaphis graminum)]
          Length = 579

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 139/599 (23%), Positives = 268/599 (44%), Gaps = 47/599 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI +LL    I  LI   +   +   N     Y   CPFH++KTPSF  +  K F
Sbjct: 4   KIPKYFINELLFRTNIVELIETRIKLKKNGKN-----YQTHCPFHNDKTPSFTVSYEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIR 119
           YYCF C   G+ + FL      +F+ES++ LA I  + +P       +K+    +  L  
Sbjct: 59  YYCFGCSAHGNAIDFLINYDNLNFVESIEELATIHSIEIPFDKKGTIEKKIYLKKQKLYF 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L++  +  +  ++          YL ERGI+ + I+ F +G++ +      +    K   
Sbjct: 119 LMDKMSKLYQKNIIFTNSANK--YLTERGINKNMIDFFCIGFSSNKWDLFSKQFNIKKDF 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           E+ ++   + I  + +   YD F+ R++FPI    G++I+FGGR+++     KYLNS E 
Sbjct: 177 EKDLLHYKI-ISTNKNGYIYDTFQGRIVFPIHDQHGRIISFGGRSITNNILPKYLNSHEN 235

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKGK +Y  +       K            ++++VEGY+DV+ L Q  ++ VVSSLG
Sbjct: 236 DIFHKGKQIYGLYQVKKKHSKP----------KYLLVVEGYIDVIMLTQYNIEYVVSSLG 285

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T++T+  +++L++ +  ++ C+DGDD G  A+++ + + L ++     + F++L   EDP
Sbjct: 286 TSITKEHIQILFRHTNTVIYCYDGDDAGRNASWRTLKIALPYISDKKNIKFIILPNNEDP 345

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ I+  G+  F+  I  +L +    +K   +N   ++ D++  L +     IN I    
Sbjct: 346 DTIIKKEGQKKFQLRIDNALTMSKFFFKNILKNVDLSSDDDKFHLSVRALPLINCISSDT 405

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           +R Y  Q +   +  +      +        KK+ + + +  P                 
Sbjct: 406 IRIYLRQILARTIGIVDDYQFEKFLYEKERKKKSLQFQIKHTPM---------------- 449

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL--WSFLFSDFVEQKYFLPEEI 537
                  L+  LI +P + +      +  +++N ++Q L  +  +     +   F   ++
Sbjct: 450 -----RTLIGLLIQNPNLARLVP---STKKFENEKIQGLPIFLEILKTCSDNPNFNTGQL 501

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            +         +LK L +      +        +  ++  Y + L   +   +   + +
Sbjct: 502 LEFYRYSKIINILKILSKWDHMI-IKEKIQNMFLDLLKNTYSKILEKRQEKLIAKERIQ 559


>gi|332678202|gb|AEE87331.1| DNA primase [Francisella cf. novicida Fx1]
          Length = 605

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 156/595 (26%), Positives = 270/595 (45%), Gaps = 29/595 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               +FIK+L+    I +++ +YV+  +   N     Y  CCPFH+EKTPSF  N  K F
Sbjct: 4   KVSNNFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   GD L+F+  +    FI++V+ LA I G P+       +  +KE++    I 
Sbjct: 59  YHCFGCQASGDALTFVKNINKFEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118

Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +  A  ++  +L N+  K +   YL +RGIDS   + F +GY+ +   ++ E  +    
Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELAKSINI 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            EE +++ GL I  D     YDRFR RL+FPIR+ +G VIA+GGR     + VKY+NSPE
Sbjct: 179 PEEILVDTGLAIKNDKG-NLYDRFRGRLMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K   LY  +      +K    D+   S   +++VEGYMDV+SL Q G    V++L
Sbjct: 238 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVSLAQHGFYAAVATL 292

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA +    ++L++ +  ++LCFDGD+ G +AA + I ++L  L    ++  + L   +D
Sbjct: 293 GTAFSPNHAKILFRETSSVILCFDGDEAGKKAALRTIKILLPMLDGNKKLKILTLPDKDD 352

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD +I+ YG   F   +  SL + + +     + +  +  + +AE+  +LKN +  ++D 
Sbjct: 353 PDDYIKKYGLERFHTALDNSLAVAEFVIDNLIQGKDLSKAEAKAEVLENLKNFLADVEDN 412

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                 +  I D++    +++        +      R ++ +                  
Sbjct: 413 IYSESITATIADKIGIKVEQFKNLLKIRRQTTVNINRQQNIQQKKLAKNLLLEELVLAEL 472

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             ++ +  +L    N   I              +  L  L   L     +    +   I 
Sbjct: 473 FVNIADFRILQH-TNDFEIFA-----------TSKNLDILAKSLKILKEDSSNQIEAVIL 520

Query: 539 QRLCER---GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            +L       + E   +L              +     +    ++      + RL
Sbjct: 521 IQLLAEDYPDYREYFFELLSYGIRNTQKKYAEDKYQEQMLVMLKRVENSSVKKRL 575


>gi|34558196|ref|NP_908011.1| DNA primase [Wolinella succinogenes DSM 1740]
 gi|34483915|emb|CAE10911.1| DNA PRIMASE PROTEIN [Wolinella succinogenes]
          Length = 554

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 150/590 (25%), Positives = 248/590 (42%), Gaps = 56/590 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I+ L   I I++++G Y++  +         + A CPFH EKTPS   +  KGFY
Sbjct: 2   ITEESIERLKQMIDIADVVGSYLELTKSGA-----SFKALCPFHGEKTPSLIIHPQKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      ++ E+++++A +  V L   D      +        L+E
Sbjct: 57  HCFGCGASGDAIKFVMEYEKLTYPEAIEKIAGLYNVSLSYTDVASNAPKS------SLLE 110

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
             + F+   L++  +     YL  R + ++ IE F++GYAP S  +LR      G    +
Sbjct: 111 KLSSFYQKRLESEPNA--LEYLKSRSVHTNMIERFEIGYAPASSETLRFLE---GGFFSQ 165

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                L    + +   Y RF +RL FPI +   +++ FGGRT+      KY+NSP+T LF
Sbjct: 166 NEALELGALAEENGRLYARFIDRLTFPIYAPNRKLVGFGGRTM-GNHPAKYINSPQTKLF 224

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           +K K LY +  A   + K             II+ EGY+DV+ L QAG    V++LGTAL
Sbjct: 225 NKSKLLYGYPLAKEAILK----------EGKIIVTEGYLDVILLHQAGFSYAVATLGTAL 274

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P+I+L +DGD  G+ AA KA  L       G     VL S G DP   
Sbjct: 275 TLDHLPLLSKGEPKILLSYDGDKAGIAAALKASRL---LANHGKEGGVVLFSGGLDPADM 331

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +         +L +   P V+ + ++  E+   ++P ++          +  +    L+ 
Sbjct: 332 VAQKRIEELNRLFLRPTPFVEFVLQKSVESYDLSSPLQKEAALKECGGFLRTL-SPLLQE 390

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   +   L+       T                     S R   +   +G  +    L
Sbjct: 391 EYKPLLASLLKIPASLIRT-------------------VKSPRHPLAPPKEGIGAGGSEL 431

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR-- 540
            EA+L+ T++  P +L+   + L    +     Q  +  L     E    L   + +R  
Sbjct: 432 AEASLIKTILEQPRLLEFVLEYLDSEVFG--VHQAEFELLKLGEFEHPKLLRILLQERIH 489

Query: 541 -LCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKRF 588
            L E    E L+ + R      L       ++   +R  +   + ++   
Sbjct: 490 PLEESVLKEQLRLMLRHFYSKKLKEIAANKSLDFKIRAFWLGKIRVHLEK 539


>gi|223041181|ref|ZP_03611433.1| DNA primase [Campylobacter rectus RM3267]
 gi|222877540|gb|EEF12669.1| DNA primase [Campylobacter rectus RM3267]
          Length = 552

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 130/602 (21%), Positives = 243/602 (40%), Gaps = 51/602 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I+ L     I +++G Y+   +   N     +   CPFHD+K PS   + S+G +
Sbjct: 2   IDPKSIERLKAQTDIVDVVGHYLPLKKSGAN-----FVCVCPFHDDKNPSMSVSPSRGIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CFSC   GD + F+      S+ E+V+++A +    L  V      KE        ++E
Sbjct: 57  HCFSCKAGGDAIKFVMDYEKLSYPEAVEKIAGLQNFTLNYVRGGEPAKENKH-----ILE 111

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  F+   L          YL  RGI    I+ F+LG+AP+S  ++R    ++      
Sbjct: 112 NANAFYRSLLYKTPAAVE--YLYSRGITDELIDKFELGFAPESAQTIRLLQNEQIEP--- 166

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                + I   N    Y  F NR+ FPI +  G+++ FGGRT+S     KY+NSP++ +F
Sbjct: 167 KEALEVGIVKQNENGIYASFINRITFPIYTHAGRLVGFGGRTISGN-PAKYVNSPQSAVF 225

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K    Y +  A   +           + + II+ EGYMDV+ L +AG  NVV+ LGTAL
Sbjct: 226 DKSTLFYGYHLAKREI----------FTKNQIIITEGYMDVIMLHKAGFNNVVAVLGTAL 275

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL +    ++LCFDGDD G+ AA K+  L+  + I G   + V++  G DP   
Sbjct: 276 TTKHLPLLKRGEISVILCFDGDDAGINAATKSALLLAQNEIDG---SVVIIEGGADPADM 332

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +         ++      + +   +        + P ++ +    ++     +K   +  
Sbjct: 333 VVAGKIEYLRQIFESGTEIGEFYIRHLASGFDLSRPVQKQKALEAIQAFTASLK-PIVAN 391

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  +   L+     +        +  ++  +  + +                  +  +
Sbjct: 392 SYAPLVAKILKIAEGSFWLTRGANTQAAQERMQAYEMQN----------FGKNQRGRKDI 441

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E   L T++ +P + +   + L    +     + ++  +          + E + +   
Sbjct: 442 LEIRFLKTMLENPNLKKIVLENLKTEYFV--RHRDIFEAVARGVGTDDPAVRELMFENYD 499

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
              F E  + L   V               ++ + Y       +  + +  + ++I + +
Sbjct: 500 --AFKEEDEILKNIV-------ILKVGFYENLHKEYSMKQIPLEEKKQILTKIKKIIEAL 550

Query: 603 AQ 604
            +
Sbjct: 551 KK 552


>gi|148244440|ref|YP_001219134.1| DNA primase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326267|dbj|BAF61410.1| DNA primase [Candidatus Vesicomyosocius okutanii HA]
          Length = 594

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 153/626 (24%), Positives = 269/626 (42%), Gaps = 49/626 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              DF  DL   + I ++I Q V   +        DY ACCPFH EKTPSF  +  K  Y
Sbjct: 4   INADFKDDLPNRVNIVDIINQRVPLKKAGK-----DYKACCPFHHEKTPSFIVSAEKQMY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C      + F+        +E+V+ +A+ +G+ + V D  I+  +   T  + L++
Sbjct: 59  KCFGCGDGNGVIKFVMKFDNLGLVEAVETIASESGISV-VYDKNIKPIDTRLTRYLDLMQ 117

Query: 123 VATDFFHHSLKNARDKRLHY-YLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
               F+   LK +  K     Y+  RGI S   + F+LG+AP +   L    +      +
Sbjct: 118 RVGQFYIQQLKQSLAKNKAVGYVKYRGISSQIAKRFELGFAPPNSNLLFGFKQDSQDIAD 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
             +   L  D   S   YD F++R++FPI +++G +IAFGGR+ +     KY NSPET +
Sbjct: 178 LKVMGLLCDDQYRSGKYYDLFKDRIMFPIHNNKGNIIAFGGRSCNNNFKAKYFNSPETPI 237

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K K LY  +    Y +          S  +I++VEGYMDV+SL QAG+  VV++LGT 
Sbjct: 238 FSKSKELYGLYHMRKYSR----------SIDYILVVEGYMDVVSLHQAGISQVVATLGTV 287

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T   L +L++ +  I+ CFDGD  G +AA++A+++ L  +  G  + F+ L   EDPD+
Sbjct: 288 TTVEHLNILFRTTNTIIFCFDGDKAGEKAAWRALNITLPVIKAGITIKFLFLPDKEDPDT 347

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            ++     AF K I  +  L   L+        FNT + +      +   +  I  +  +
Sbjct: 348 LVKKESSQAFVKRIENAQFLSKFLFSHIKTEVDFNTIEGKTLFLERVSMLLRKINYKTYQ 407

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL-------MQSSLVKG 474
           +   + +   + Q  ++  +         + N     +      +        +  +   
Sbjct: 408 HQLLEGLAGEVNQSIEQIESILERQDISTQSNTFSISKNYEEPPMFNFYDSDEKYQVPMS 467

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                 +     ++  L+N+P+++ +       +R        +   L +  + Q+    
Sbjct: 468 VPLISNNSLIDQMIGLLLNYPSMVDKTV----MLRVRKINNADILQKLANLVLLQEDITL 523

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E + ++  ++      +QL        +          D +  +  AL           +
Sbjct: 524 ETMVEQFPQKK-----QQLLNLYNKKRVLKNY------DYKDEFLDALL----------K 562

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISI 620
            EE +K+ + +    E E T  L + 
Sbjct: 563 IEERQKEKSALLITNEIEYTKNLQAR 588


>gi|328950410|ref|YP_004367745.1| DNA primase [Marinithermus hydrothermalis DSM 14884]
 gi|328450734|gb|AEB11635.1| DNA primase [Marinithermus hydrothermalis DSM 14884]
          Length = 586

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 164/627 (26%), Positives = 279/627 (44%), Gaps = 58/627 (9%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           + +   +    L+ +YV           G +   CPFH EKTPSFH ++ KG +YCF C 
Sbjct: 5   EAIRARLDFKGLVERYVALRPAGK----GRWKGLCPFHKEKTPSFHVDEEKGLFYCFGCK 60

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
             GD  SFL  + G +F E++++LA   GV LP      E+  K + +L+ + E+A  +F
Sbjct: 61  AGGDAFSFLERIEGITFQEALEKLAQETGVELPR----AERNAKPRRELLEINELALAYF 116

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
              L    + +   YL  RG+   ++E F LGYAP     L  +L++ G    + +EAGL
Sbjct: 117 RSHL----EGKAWAYLQRRGLTEASVERFALGYAPPGWDGLLRYLQKHGVDPRQGVEAGL 172

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
           LI+ +     +DRFR+R+IFPI    G+V+AF GR L+  ++ KYLN+PET +F K + L
Sbjct: 173 LIERNG--RVFDRFRDRVIFPIHDPLGRVVAFTGRVLNPEDTPKYLNTPETPIFKKSELL 230

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           Y +  A   L+               ++VEG  DV++L Q G    V+ LG+AL+  Q  
Sbjct: 231 YGYAQARAALR----------ERRQAVVVEGLFDVIALHQMGWPEAVAVLGSALSPDQAL 280

Query: 309 LLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS-FIRCY 366
           LL +    R+ L FD D+ G +A    +DL    +     V    L  G+DP    +   
Sbjct: 281 LLKRAGVERVYLAFDADEAGRKATLAGLDL---EIARSFLVYAARLPEGQDPGDLLVLPN 337

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKLRYYYS 425
           G   F++ +  +L  V+  ++  +       P+ +  +   L    +       +     
Sbjct: 338 GAQVFQEALERALSEVEFRFEAASAGLDLTRPEAKRRVLQALLPRLVQAEPFDPVAEALK 397

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             I DRL    +          +      R R +   ++++   +    +   K  L E 
Sbjct: 398 ALIIDRLAIDPRALEDVILTQKK------RRRTETLTTEQVRGMTPTTREPRDKTLLLEL 451

Query: 486 ALLLTLINHP-AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            ++  L++ P   L+   Q + D  +   +   L  F+  +   ++YF PE I     +R
Sbjct: 452 DIIALLLSAPQEELRTWVQYVEDHTWPPPD-SFLAEFI--EVARKEYFSPERILHHFEKR 508

Query: 545 GFGE-LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           G G  L ++L          +A+ + ++  +R+ Y            L+ + E ++ ++ 
Sbjct: 509 GEGARLFERLMLAGGTIPDLAASLDKSMARLREAY------------LTARLERLKAELK 556

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQ 630
           Q       E   +L+  + EV   I  
Sbjct: 557 Q-----NPEDPIVLLKEIQEVQKAIEA 578


>gi|184157112|ref|YP_001845451.1| DNA primase [Acinetobacter baumannii ACICU]
 gi|260555733|ref|ZP_05827953.1| DNA primase [Acinetobacter baumannii ATCC 19606]
 gi|332876321|ref|ZP_08444094.1| DNA primase [Acinetobacter baumannii 6014059]
 gi|183208706|gb|ACC56104.1| DNA primase (bacterial type) [Acinetobacter baumannii ACICU]
 gi|260410644|gb|EEX03942.1| DNA primase [Acinetobacter baumannii ATCC 19606]
 gi|322507010|gb|ADX02464.1| DNA primase [Acinetobacter baumannii 1656-2]
 gi|323516878|gb|ADX91259.1| DNA primase [Acinetobacter baumannii TCDC-AB0715]
 gi|332735472|gb|EGJ66526.1| DNA primase [Acinetobacter baumannii 6014059]
          Length = 621

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 163/681 (23%), Positives = 277/681 (40%), Gaps = 119/681 (17%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+  I  +L    I +LIGQ V   +         Y  CCPFH EKTPSFH    K 
Sbjct: 1   MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115
           +Y+CF C   G+ + FL  +   +FI+ ++ L++  GV LP  +   +K    +      
Sbjct: 56  YYHCFGCQANGNAIRFLMDIDNRNFIDVMKELSSNTGVELPKDNTDNKKLSYTRQVTKPS 115

Query: 116 -----------------------------------------------DLIRLIEVATDFF 128
                                                          +L  L+E    F+
Sbjct: 116 TPPKTVAEPTTQAPIEDQYNTFEPVYFDDPFAQFEQPFSFDEPVQEGNLYDLLENVAQFY 175

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
            H L     ++   Y  +RG+    I+ ++LGYAP+       HL +    + + ++   
Sbjct: 176 EHQL--PTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQ----HLEKAFPYDIEGLKQLG 229

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
           LI   +S   +D  R+R+IFPIR  +G+V+ FGGR L+     KY+NSP++ +FHK + L
Sbjct: 230 LIRSSDSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLL 289

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           Y  +                  ++  ++VEGYMDV++L Q G+   V++LGTA     L 
Sbjct: 290 YGLYEGRKL------------KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHLN 337

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
           +L+K + RI + FDGD  G +AA + +++ L  L  G  + F +L    DPDS IR  G 
Sbjct: 338 ILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREGV 397

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQA 427
             F+KL+ ++  L D ++   T     +TP+ ++ +   L+     +      RY  +Q+
Sbjct: 398 ENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLTQS 457

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            R++L                        R     S     S  ++ K        E   
Sbjct: 458 FREKLGL--------------------GKRFTPQISHDASLSFNIQTKD-------EDFA 490

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           +  L++HP  L   ++ L      +  L K+ + L   F E      +E+          
Sbjct: 491 IAILMHHP-FLYIHFEGLRAYIPQDELLAKILAILNRIFDELP--DDQELATYYVLGACS 547

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
               ++   ++   + +        +V     +  AL  + R L ++ +     +     
Sbjct: 548 SYCHEIADIMQRTNIQAL---TQAPEVADKLAKEYALGLQERYLRQKLKSKISLV----- 599

Query: 608 KGEAEKTAILISILHEVHIQI 628
                ++  L   L+E+  QI
Sbjct: 600 -----ESRNLRQQLNELTKQI 615


>gi|153820574|ref|ZP_01973241.1| DNA primase [Vibrio cholerae NCTC 8457]
 gi|126508882|gb|EAZ71476.1| DNA primase [Vibrio cholerae NCTC 8457]
          Length = 337

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 127/352 (36%), Positives = 192/352 (54%), Gaps = 26/352 (7%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69
           DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY+CF C  
Sbjct: 1   DLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFYHCFGCGA 55

Query: 70  KGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKIQTDLIRL 120
            G+ + F+       F E+++ LA+  G+ +      P           K + +  L  L
Sbjct: 56  HGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSEDKRSLYDL 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +     F+   LK   +K    YL  RG+    ++ F +GY  D    +R +  Q+  SE
Sbjct: 116 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 175

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++ AG+LI+ DN    YDRFR R++FPIR  RG+VI FGGR +++  + KYLNSPET 
Sbjct: 176 DMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKYLNSPETP 233

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKGK LY  +  L   ++             I++VEGYMDV++L Q GV   V+SLGT
Sbjct: 234 IFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDYSVASLGT 283

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           + T   L+LL++ +  ++ C+DGD  G  AA++A++  L +L  GN + F+ 
Sbjct: 284 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLF 335


>gi|260553981|ref|ZP_05826246.1| DNA primase [Acinetobacter sp. RUH2624]
 gi|260404867|gb|EEW98372.1| DNA primase [Acinetobacter sp. RUH2624]
          Length = 621

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 164/681 (24%), Positives = 278/681 (40%), Gaps = 119/681 (17%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+  I  +L    I +LIGQ V   +         Y  CCPFH EKTPSFH    K 
Sbjct: 1   MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115
           +Y+CF C   G+ + FL  +   +FI+ ++ L++ AGV LP  +   +K    +      
Sbjct: 56  YYHCFGCQANGNAIRFLMDIDNRNFIDVMKELSSNAGVELPKDNTDNKKLSYTRQVTKPP 115

Query: 116 -----------------------------------------------DLIRLIEVATDFF 128
                                                          +L  L+E    F+
Sbjct: 116 VPAKTVVEPSTQAPIDDQYNTLEPVYFDDPFAQFEQPFNFEEPVQEGNLYDLLENVAQFY 175

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
            H L     ++   Y  +RG+    I+ ++LGYAP+       HL +    + + ++   
Sbjct: 176 EHQL--PTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQ----HLEKAFPYDIEGLKQLG 229

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
           LI   +S   +D  R+R+IFPIR  +G+V+ FGGR L+     KY+NSP++ +FHK + L
Sbjct: 230 LIRSSDSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLL 289

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           Y  +                  S+  ++VEGYMDV++L Q G+   V++LGTA     L 
Sbjct: 290 YGLYEGKKL------------KSNDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHLN 337

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
           +L+K + RI + FDGD  G +AA + +++ L  L  G  + F +L    DPDS IR  G 
Sbjct: 338 ILFKQNNRITIAFDGDIAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREGL 397

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQA 427
             F++L+ ++  L D ++   T     +TP+ ++ +   L+     +      RY  +Q+
Sbjct: 398 ENFQRLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLTQS 457

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            R++L                        R     S     S  ++ K        E   
Sbjct: 458 FREKLGL--------------------GKRFTPQISHDASLSFNIQTKD-------EDFA 490

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           +  L++HP  L   ++ L      +  L K+ + L   F E      +E+          
Sbjct: 491 VAILMHHP-FLYIHFEGLRAYIPQDELLAKILAILNRIFDELP--DDQELATYYVLGACS 547

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
               ++   ++   + +        +V     +  AL  + R L ++ +     +     
Sbjct: 548 SYCHEIADIMQRTNIQAL---TQAPEVADKLAKEYALGLQERYLRQKLKSKISLV----- 599

Query: 608 KGEAEKTAILISILHEVHIQI 628
                ++  L   L+E+  QI
Sbjct: 600 -----ESRNLRQQLNELTKQI 615


>gi|261414936|ref|YP_003248619.1| DNA primase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371392|gb|ACX74137.1| DNA primase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326528|gb|ADL25729.1| DNA primase [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 722

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 155/657 (23%), Positives = 283/657 (43%), Gaps = 60/657 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y  + I++L     I+ +I Q++   +   N     Y   CPFHD+ +PS   N + G Y
Sbjct: 4   YSDEIIQELKNQADIALVIQQFLPLKKSGVNK----YVGVCPFHDDHSPSMSVNSTLGIY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRLI 121
            CF+C   GD   F+       F  +V+ +A   G  LP   +    +  + +T + +L 
Sbjct: 60  KCFACGAGGDVFKFIQEHEKLDFKGAVEWVANFVGFALPNLGNNVNTEVLEERTMVRKLN 119

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E+A ++F   L      +   YL++R +     + F +GYAP  R  L  +  + GFS  
Sbjct: 120 ELACEWFEQQL--TLSPKALEYLNKRHVSPETRKQFHIGYAPTGREGLIGYAARNGFSPR 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV------KYLN 235
             ++AGL ++   +    D+FR+RL+  I++  G V+AFGGR LS   S       KY+N
Sbjct: 178 DCVKAGLAVEK-ENGGIADKFRDRLMIAIQNLSGVVVAFGGRDLSDPASHNGIKLAKYMN 236

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET L+ K   L+    + N + K           + +I+VEGY D++SL Q+GVQNVV
Sbjct: 237 SPETALYSKRDILFGLNHSRNAIMK----------ENAVIIVEGYFDLISLYQSGVQNVV 286

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ GTALTE    +L + +    L FDGD  G  A  +++++VL   +            
Sbjct: 287 AASGTALTENHASILARYAKTAYLVFDGDAAGQNATRRSLEIVLPKGLSPKVFALSRPDG 346

Query: 356 GE-DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            + DPD+F+   G  AF + +  +    +            N+P++RA      K  I  
Sbjct: 347 TKIDPDNFVNEQGPDAFRRALRTA----EDWLSYLGRTMPNNSPEDRAAFITQAKTLIKS 402

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I++ +LR  Y + + +R                     + +        Q       V  
Sbjct: 403 IENPELRNQYLKLVSERYSTT--------RSLAGIKVAHPKREKAPTAEQPAAPQVSVPW 454

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADI-------RYDNNELQKLWSFLFSDFV 527
           +L     +R A LL     +P +L    +             +D+  + +    + + + 
Sbjct: 455 ELLSPIEVRFANLLF---RNPTLLDRAAEYFDMDFAASGIQIFDSPLIDEFIQSILAQYA 511

Query: 528 EQKYFLPEEIHQRLCER---GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-- 582
           E   F P  +++ L  +      +L  +  +   +   +  T     +++   Y++ +  
Sbjct: 512 ETGAFSPRVLYESLSPQLQLFLEQLPDETWKTPNEILEFYDTLAVLTLNLCDRYKKLIPL 571

Query: 583 ------ALYKRFRLLSRQKEEI--EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                  L  +    ++  + I  +++I+ +T    AE+     + L E++ +I+++
Sbjct: 572 DSEAGMRLRMQLNKFTQGIQTISRKRKISAITPDVFAEQIIQSKTPLIELYTEINEL 628


>gi|169634099|ref|YP_001707835.1| DNA primase [Acinetobacter baumannii SDF]
 gi|169152891|emb|CAP01929.1| DNA primase [Acinetobacter baumannii]
          Length = 621

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 163/681 (23%), Positives = 277/681 (40%), Gaps = 119/681 (17%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+  I  +L    I +LIGQ V   +         Y  CCPFH EKTPSFH    K 
Sbjct: 1   MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115
           +Y+CF C   G+ + FL  +   +FI+ ++ L++  GV LP  +   +K    +      
Sbjct: 56  YYHCFGCQANGNAIRFLMDIDNRNFIDVMKELSSNTGVELPKDNTDNKKLSYTRQVTKPS 115

Query: 116 -----------------------------------------------DLIRLIEVATDFF 128
                                                          +L  L+E    F+
Sbjct: 116 TPPKMVAEPTTQAPIEDQYNTFDPVYFDDPFAQFEQPFSFDEPVQEGNLYDLLENVAQFY 175

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
            H L     ++   Y  +RG+    I+ ++LGYAP+       HL +    + + ++   
Sbjct: 176 EHQL--PTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQ----HLEKAFPYDIEGLKQLG 229

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
           LI   +S   +D  R+R+IFPIR  +G+V+ FGGR L+     KY+NSP++ +FHK + L
Sbjct: 230 LIRSSDSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLL 289

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           Y  +                  ++  ++VEGYMDV++L Q G+   V++LGTA     L 
Sbjct: 290 YGLYEGRKL------------KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHLN 337

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
           +L+K + RI + FDGD  G +AA + +++ L  L  G  + F +L    DPDS IR  G 
Sbjct: 338 ILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREGV 397

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQA 427
             F+KL+ ++  L D ++   T     +TP+ ++ +   L+     +      RY  +Q+
Sbjct: 398 ENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLTQS 457

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            R++L                        R     S     S  ++ K        E   
Sbjct: 458 FREKLGL--------------------GKRFTPQISHDASLSFNIQTKD-------EDFA 490

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           +  L++HP  L   ++ L      +  L K+ + L   F E      +E+          
Sbjct: 491 IAILMHHP-FLYIHFEGLRAYIPQDELLAKILAILNRIFDELP--DDQELATYYVLGACS 547

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
               ++   ++   + +        +V     +  AL  + R L ++ +     +     
Sbjct: 548 SYCHEIADIMQRTNIQAL---TQAPEVADKLAKEYALGLQERYLRQKLKSKISLV----- 599

Query: 608 KGEAEKTAILISILHEVHIQI 628
                ++  L   L+E+  QI
Sbjct: 600 -----ESRNLRQQLNELTKQI 615


>gi|325121169|gb|ADY80692.1| DNA primase [Acinetobacter calcoaceticus PHEA-2]
          Length = 622

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 162/684 (23%), Positives = 275/684 (40%), Gaps = 124/684 (18%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+  I  +L    I +LIGQ V   +         Y  CCPFH EKTPSFH    K 
Sbjct: 1   MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115
           +Y+CF C   G+ + FL  +   +FIE ++ L++  G+ LP  + + +K    +      
Sbjct: 56  YYHCFGCQANGNAIRFLMDIDNRNFIEVMKELSSSTGIELPKDNTENKKLSYTRQVTKPP 115

Query: 116 ------------------------------------------------DLIRLIEVATDF 127
                                                           +L  L+E    F
Sbjct: 116 VTKTNAAEPVIPQQPSDESYNTLEPVFFDDPFAQFEQPFSFDEPVQEGNLYDLLENVAQF 175

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
           +   L     ++   Y  +RG+ +  I+ ++LGYAP+       HL +    +   ++  
Sbjct: 176 YEQQL--PHSQKAKNYFKQRGLTNQTIQFWRLGYAPEDWQ----HLEKAFPYDIDGLKQL 229

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247
            LI   ++   +D  R+R+IFPIR  +G+V+ FGGR L+     KY+NSP++ +FHK + 
Sbjct: 230 GLIRSSDNGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQL 289

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           LY  +                  SS  ++VEGYMDV++L Q G+   V++LGTA     L
Sbjct: 290 LYGLYEGRKL------------KSSDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 337

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
            +L+K + RI + FDGD  G +AA + +++ L  L  G  + F +L    DPDS IR  G
Sbjct: 338 NILFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 397

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQ 426
              F+KL+ ++  L D ++   T     +TP+ ++ +   L+     +      RY  +Q
Sbjct: 398 LENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLTQ 457

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
           + R++L                        R     S     S  +  K        E  
Sbjct: 458 SFREKLGL--------------------GKRFTPQISHDASLSFNIHTKD-------EDF 490

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +  L++HP  L   ++ L    + +  L K+   + +   +      E     +     
Sbjct: 491 AIAILMHHP-FLYIHFEGLQAYIHQDELLAKVL-AILNRIFDDLPDDQELATYYVLGACS 548

Query: 547 G--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                +  + ++     L  A       +V     +  +L  + R L ++ +     I  
Sbjct: 549 SYCHEIADIMQRTNIQALTQAP------EVADKLAKEYSLSLQERYLRQKLKSPISLI-- 600

Query: 605 VTAKGEAEKTAILISILHEVHIQI 628
                   ++  L   L+E+  QI
Sbjct: 601 --------ESRNLRQQLNELTKQI 616


>gi|239501207|ref|ZP_04660517.1| DNA primase [Acinetobacter baumannii AB900]
          Length = 621

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 163/681 (23%), Positives = 277/681 (40%), Gaps = 119/681 (17%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+  I  +L    I +LIGQ V   +         Y  CCPFH EKTPSFH    K 
Sbjct: 1   MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115
           +Y+CF C   G+ + FL  +   +FI+ ++ L++  GV LP  +   +K    +      
Sbjct: 56  YYHCFGCQANGNAIRFLMDIDNRNFIDVMKELSSNTGVELPKDNTDNKKLSYTRQVTKPS 115

Query: 116 -----------------------------------------------DLIRLIEVATDFF 128
                                                          +L  L+E    F+
Sbjct: 116 TPPKTVAELTTQAPIEDQYNTFEPVYFDDPFAQFEQPFSFDEPVQEGNLYDLLENVAQFY 175

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
            H L     ++   Y  +RG+    I+ ++LGYAP+       HL +    + + ++   
Sbjct: 176 EHQL--PTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQ----HLEKAFPYDIEGLKQLG 229

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
           LI   +S   +D  R+R+IFPIR  +G+V+ FGGR L+     KY+NSP++ +FHK + L
Sbjct: 230 LIRSSDSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLL 289

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           Y  +                  ++  ++VEGYMDV++L Q G+   V++LGTA     L 
Sbjct: 290 YGLYEGRKL------------KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHLN 337

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
           +L+K + RI + FDGD  G +AA + +++ L  L  G  + F +L    DPDS IR  G 
Sbjct: 338 ILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREGV 397

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQA 427
             F+KL+ ++  L D ++   T     +TP+ ++ +   L+     +      RY  +Q+
Sbjct: 398 ENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLTQS 457

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            R++L                        R     S     S  ++ K        E   
Sbjct: 458 FREKLGL--------------------GKRFTPQISHDASLSFNIQTKD-------EDFA 490

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           +  L++HP  L   ++ L      +  L K+ + L   F E      +E+          
Sbjct: 491 IAILMHHP-FLYIHFEGLRAYIPQDELLAKILAILNRIFDELP--DDQELATYYVLGACS 547

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
               ++   ++   + +        +V     +  AL  + R L ++ +     +     
Sbjct: 548 SYCHEIADIMQRTNIQAL---TQAPEVADKLAKEYALGLQERYLRQKLKSKISLV----- 599

Query: 608 KGEAEKTAILISILHEVHIQI 628
                ++  L   L+E+  QI
Sbjct: 600 -----ESRNLRQQLNELTKQI 615


>gi|171914126|ref|ZP_02929596.1| DNA primase [Verrucomicrobium spinosum DSM 4136]
          Length = 613

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 160/642 (24%), Positives = 274/642 (42%), Gaps = 56/642 (8%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
           L    I +L+G+YV   R  TN     +   CPFH EKTPSF+ N ++G Y+CF C V G
Sbjct: 2   LAATDIVDLVGRYVKLRRVGTN-----WRGLCPFHGEKTPSFYVNPARGSYHCFGCGVGG 56

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFH 129
             + F+    G  F+++V+RLA  AG+ +     D   E+  KI+  L++L    + +FH
Sbjct: 57  TAIRFVMEHDGLQFMDAVKRLADSAGIRIQEEVWDANAERTAKIRNGLVKLHRDISAWFH 116

Query: 130 HSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
             L K    +    YL  RGI++   + +++GYAP S   L +   +  ++E  ++  G+
Sbjct: 117 LLLMKGQVAEEARAYLKSRGINAATAKSWEMGYAPASTPMLMKWAEEHKYTENLLVAGGI 176

Query: 189 LIDGDNSAT----SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILFH 243
           L  GD  +      Y RFR+RL+FPIR+  G+VIAF GR L    ++ KYLNSPET+LF+
Sbjct: 177 LARGDEDSGRGGQIYARFRHRLMFPIRNDYGEVIAFSGRLLDSNAKAAKYLNSPETMLFN 236

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K K L+    +   + K+ R           ++ EG +D++   ++G +NVV+ LGTA T
Sbjct: 237 KSKVLFGLDKSKRAIIKANRA----------VVCEGQIDMIMAFESGFENVVAPLGTAFT 286

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           E+  R+L + +  +VLCFD D+ G +AA +A  +       G  V    L +GEDPDS I
Sbjct: 287 EFHARMLKRHAEEVVLCFDSDNAGYKAAERAFHI---LAPTGLVVKVAPLPQGEDPDSLI 343

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R  G  AF+  + ++    D +    +  R+     E+      +   I  + +   R  
Sbjct: 344 RKEGPQAFQAKLDDARDFFDHMIDYASSTRNMAETREKTRFAGDMATMIQLLDNNIARDA 403

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-------VKGKL 476
             Q +  RL  L   +  + +   +      +              S         +   
Sbjct: 404 AIQKVCVRLNILESDFRKQVARLAKSIANQQQKAAAGKNGGNGASGSGASGATDRPEEAE 463

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS----FLFSDFVEQKYF 532
              P      ++   +    +L             + +L  L +     L     + +  
Sbjct: 464 LPPPHPHARQMIRLAVTSAEVLALIR--------THAQLDALAAVPGCELLELVFKSQ-- 513

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              ++        F   L   + +     +       +I    Q  Q     +  F+ L 
Sbjct: 514 --SDLSTSGGLSAFLTTLTPAEERAFSRVVAEPPQRVSIETALQTLQ-----HIEFQGLE 566

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              + +  ++ Q       ++  +L   +  +  +I    +Q
Sbjct: 567 NLYQNVTTRLRQPGLA--KDEVILLQQEVIRLKGEIGVRRAQ 606


>gi|212697196|ref|ZP_03305324.1| hypothetical protein ANHYDRO_01763 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675971|gb|EEB35578.1| hypothetical protein ANHYDRO_01763 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 449

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 139/455 (30%), Positives = 225/455 (49%), Gaps = 26/455 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D   ++L +  I  +IG YVD  +         Y   CPFH+EKTPSF  +D K  +
Sbjct: 4   ISDDKKNEILENSDIVAIIGDYVDLKKSGN-----SYKGLCPFHNEKTPSFTVDDKKQLF 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD +SF+    G S+I+S++ LA+ AG+ +   D K  ++ K    L  + +
Sbjct: 59  HCFGCGEGGDVVSFIMHKEGLSYIDSMKYLASKAGIKID--DSKSSRENKRLNRLYDINK 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F+ +L   +  ++  YL  RG  S+ +  F LG+A +S   L  ++++K +  + 
Sbjct: 117 DIMMYFYKNLLTDKAGQI--YLKNRGFRSNIVNTFMLGFAKNSWDDLLSYVKEKDYLLDD 174

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           I   GL I    +   YD++RNRLIFPI +  G+VI FGGR++      KYLNSPE+ +F
Sbjct: 175 IENLGL-IKKSKNGKYYDKYRNRLIFPIINHYGKVIGFGGRSI-DSTMPKYLNSPESEVF 232

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K  NLY          K             IILVEGYMDV+ L   G+   V+SLGT+L
Sbjct: 233 KKRYNLYGLNIFKKQSNK------------DIILVEGYMDVIGLNNQGIDQAVASLGTSL 280

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q +LL + +  + +C+D D+ G++A  +AI++    L  G + N + L +G DPD F
Sbjct: 281 TNDQAKLLKRYAKNVFICYDEDNAGIKATDRAIEI---LLDEGIKPNIISLEKGLDPDDF 337

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++ YG+ AF K + E+  + +  + +  +  + +  +E+ E        +  I+    R 
Sbjct: 338 VKKYGRDAFIKKMDEASDVYNYKYNKILDIYASSKENEKFEKLNLFIEFLTSIESDLTRE 397

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            +   +                 Y   +KK    +
Sbjct: 398 IFVNNVSKLFDIDKSTLKESVLKYNDNYKKTFNKK 432


>gi|317490614|ref|ZP_07949085.1| DNA primase [Eggerthella sp. 1_3_56FAA]
 gi|316910270|gb|EFV31908.1| DNA primase [Eggerthella sp. 1_3_56FAA]
          Length = 513

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 137/457 (29%), Positives = 208/457 (45%), Gaps = 27/457 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I+ +     +  +IG+     +R       D+W CCP H+EKTPSF  + +   +
Sbjct: 73  ISEEDIQKVREANDLVEVIGERTPVKQRGR-----DFWCCCPLHNEKTPSFKIDPALQLW 127

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD   F+      SF E+V+RLA  A + +     +       +  L  + +
Sbjct: 128 HCFGCGEGGDVFGFIMKTEDLSFPEAVRRLAERAHIDIAESGGRKSIGSSRKARLKAVCD 187

Query: 123 VATDFFHHSLKNARD---KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             + F+H  L             YL  RG+     + ++LG+AP     L  HL  KGF 
Sbjct: 188 ETSQFYHCQLMRNPGSDASAARSYLGARGLGGEVPKTWQLGFAP-GHGQLVRHLSAKGFK 246

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            +++++A +    ++     DRF NR++FPI   +G+ IAFGGR + KGE  KYLNS ET
Sbjct: 247 PDEMVQANVA-LSNDGGKLRDRFYNRIMFPINDPQGECIAFGGRVVGKGEP-KYLNSQET 304

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LFHK + LY    A   +           S+   ++VEGY DV++L +AGV+N V++LG
Sbjct: 305 PLFHKSQVLYGMDKAKAAMA----------STGIAVVVEGYTDVIALHEAGVRNAVATLG 354

Query: 300 TALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAI-----DLVLCHLIPGNRVNFVLL 353
           TALT   +RLL      RIV  FDGD+ G RAA +A+      +          +  V L
Sbjct: 355 TALTMRHIRLLSRHAQHRIVYLFDGDEAGQRAADRALAFIDDSMTPEAGKSRIELAAVTL 414

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               DP  F+   G    +KLI  + PL+    +R       +  + RA         + 
Sbjct: 415 PDNLDPADFVAQRGAEELQKLIANAQPLLKYGIERRLARHDLSRAEGRAAALADALQVLA 474

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
            IKD  L   Y+  I   ++   Q  I +        
Sbjct: 475 PIKDSMLARDYAVQIATSVRAREQDVIDQLEHLKAPK 511


>gi|312880429|ref|ZP_07740229.1| DNA primase [Aminomonas paucivorans DSM 12260]
 gi|310783720|gb|EFQ24118.1| DNA primase [Aminomonas paucivorans DSM 12260]
          Length = 595

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 164/616 (26%), Positives = 257/616 (41%), Gaps = 52/616 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            D ++ +   + +  ++G YV   +         +   CPFH EKTPSF  +  +  Y+C
Sbjct: 2   NDEVRRIKERLDLVEVVGDYVKLRKAGK-----SFVGLCPFHQEKTPSFSVSRERQTYHC 56

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C   GD   FL  + G +F ++++ L+A  GV L         + + + +   ++E A
Sbjct: 57  FGCGAGGDVFRFLMEMEGWTFPQALEVLSARTGVVLEH-------RGRRREEGGDVLEEA 109

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
             F+  SL  +  +    YL  R +   A E F+LG++  +  SL +HLR++G +    +
Sbjct: 110 LAFYRASLGASEGEAARAYLRRRELPQEAWERFELGWSLPAWRSLEDHLRRQGLNLRDAV 169

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
           E GLL++G     +YDRFR R++FPIRS  G+++ FGGR L  GE  KY+NSPE+ LF K
Sbjct: 170 ERGLLVEG--PKGTYDRFRGRVMFPIRSETGRLLGFGGR-LVDGEGAKYVNSPESPLFEK 226

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            K LY    A   ++               ++VEGY+D +     G    V+SLGTA TE
Sbjct: 227 RKVLYLLPQAKRAIR----------EKGSALVVEGYLDAIRCHLNGHPEAVASLGTAFTE 276

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
            Q  LL + + R ++CFD D  G  AA K    +      G  V  V L +G+DPD  +R
Sbjct: 277 EQADLLARQADRCLICFDTDAAGQEAALKG---MYVLRRKGLDVRVVRLPKGKDPDELLR 333

Query: 365 -CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
              G  AFE  + E+LPL    +      +    P ER      +   I  +    +R  
Sbjct: 334 DPQGAEAFEGALTEALPLP--RFHVAARRKWLEDPQERKRGLEEVLGGIASLSVLDVRPS 391

Query: 424 YSQAIRDR------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 D       L+ L ++         R           +G       S    G+  
Sbjct: 392 LPDVAADLGLLPHELEALLRQRGWGGVSEKRPPFPPRSGERGEGIFPPPGVSIHESGEEE 451

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             P   EAAL   L +          E       +   + + S L           PEE+
Sbjct: 452 PAPDPWEAALCHLLWSREGSRSSSAPEGVLPLLRSECARAVASALL------CGESPEEL 505

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             R  + G  +    L              E+   +V +          R R   R+ EE
Sbjct: 506 EARWLQTG-DQRSAALLALGGAFLEELYLEESPEEEVLRQL--------RLREWRRRYEE 556

Query: 598 IEKQIAQVTAKGEAEK 613
           + +++ +  +  E E+
Sbjct: 557 LHRRVVRKESLSEEER 572


>gi|153003632|ref|YP_001377957.1| DNA primase [Anaeromyxobacter sp. Fw109-5]
 gi|152027205|gb|ABS24973.1| DNA primase [Anaeromyxobacter sp. Fw109-5]
          Length = 607

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 158/636 (24%), Positives = 255/636 (40%), Gaps = 50/636 (7%)

Query: 16  PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75
            +  +IG++V+  R         +  CC FH E+TPSFH       + C+ C   GD  +
Sbjct: 2   DVVAVIGRHVELKRSGR-----TWKGCCVFHGERTPSFHVYPEDKHFKCYGCGAYGDVFT 56

Query: 76  FLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDLIRLIEVATDFFHHS 131
           FL  L G  F E V+ LA   G+ +P        +  ++ K + +++   E A  ++   
Sbjct: 57  FLQRLEGKEFPEVVKALAQEVGIEIPDAAEEDGAEARQRRKERNEVLAACEAAARYWAAR 116

Query: 132 LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191
           L++   +    YL+ERG+   +   F++G + D    L   + +KG +   ++ AGLL++
Sbjct: 117 LQSRFGEAARRYLEERGVGEESTRRFRIGISADGWSDLASRVAEKGVAAPALMRAGLLVE 176

Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES----VKYLNSPETILFHKGKN 247
                 +YDRFRNRL+FPI    GQVI FGGR++    S     KY+N+PET L+ K K 
Sbjct: 177 K-EQGGAYDRFRNRLMFPIAGMDGQVIGFGGRSMPGEASAKAGAKYINTPETPLYKKSKV 235

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           LY    A   ++K          +   +LVEGY DV+ L QAG+ N V+  GTALT   +
Sbjct: 236 LYGLDLARETIRK----------ARAALLVEGYFDVIGLHQAGITNAVAVCGTALTAEHV 285

Query: 308 RLLWKL-SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
            LL +     + + FDGD  GL A  KA   +    + G            DPD + R +
Sbjct: 286 ELLQRCDCREVTVLFDGDVAGLAAPAKAAAALFPAGVAGKVAVLPSEGGKTDPDEYARAH 345

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRS-----FNTPDERAELEIHLKNCINHIKDQKLR 421
           G+   E L+  + PL + L  R  E            +E+      L   +  + +   R
Sbjct: 346 GRAGVEALLERASPLSEHLIDRAVERTCGGPARQAALEEKLAAVRELTPFVRMMPEGLAR 405

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             +  AI  RL         E  G        AR      P             L   P+
Sbjct: 406 SVFEDAIAKRLDLDSGALRAELEGERPRRPALARPEAAPAPRPPRTAPGSRVKVLLPGPA 465

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                LL      P  L    +E           L  L   L            +    R
Sbjct: 466 ADALGLLAA---FPEALAGIAEEENLPGLMPPGPLADLARDLIR-----GPLPLDAALAR 517

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + E G  + L+++      A   +      +           AL  +   L+ +  E E+
Sbjct: 518 VQEAGDDDALRRVREIAGPARPPAERAGVELRKA--------ALKSKLERLALEMGEAER 569

Query: 601 QIAQVTAKGEAE---KTAILISILHEVHIQIHQIES 633
           ++ +  +    +   +   L++   ++  ++H +E 
Sbjct: 570 RVVKAGSAAVDDLSIQYQRLVNQKRDLQRRLHSLER 605


>gi|229587227|ref|YP_002845728.1| DNA primase [Rickettsia africae ESF-5]
 gi|228022277|gb|ACP53985.1| DNA primase [Rickettsia africae ESF-5]
          Length = 595

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 169/633 (26%), Positives = 299/633 (47%), Gaps = 50/633 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    +F + L   I IS+++ Q +   R+      G+Y   CPFH EKTPSF  ++SK 
Sbjct: 1   MRVAPEFYEFLRNRINISDVVRQKIALTRK-----SGNYVGLCPFHQEKTPSFTVSNSKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F+YCF C   GD + F S + G S+ ES  +LA   G+ +P +  K ++  +   +++ +
Sbjct: 56  FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLAIDYGIEIPKLTAKQKEFYEESDEILNI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A  FF   L       + +YL  RGI    ++ F +G+AP +    +    +     
Sbjct: 116 LELANKFFRTQLT----PEILHYLHARGITEETVKEFSIGFAPKNNKFEKFFHDKNIDII 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +      +    +     Y+ F NR+  PIR+   +++ FGGR L +G   KYLNSPET 
Sbjct: 172 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETT 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY    A++   K           +  ILVEGY DV++L QAG    V+SLGT
Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSETVASLGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ++TE  L  LW+    I+LC DGD+ G++A+ + I+L L  +    +++F+ L  G DPD
Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPSGLDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +   G   F KLI + + L +M+W  E   +SF T +E+A LE +LKN  + I D  L
Sbjct: 339 DAVNKNGVDFFAKLIDKRISLSEMIWHIEYSGKSFKTAEEKANLEKNLKNYCSKISDSDL 398

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y +  +D++ Q                  N     +K  ++    + ++      + 
Sbjct: 399 KVSYYRFFKDQIWQ------------------NLVTTQKKATTKNSNLAPIISSHGYSEL 440

Query: 481 SLREAALLLTLINHPAILQ--EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            + E A    L+  P IL+  +    + ++ ++N  L++  ++  ++ ++       EI 
Sbjct: 441 EILEHAFCALLVKFPIILEDKDIRDFILNLNFNNKLLEEFRNWYLNEIIDNN-VEASEIT 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + +  F ++   L +        S       +D+   +     L+K++ L++ Q+E  
Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNIRLDLLWQW-----LHKKYYLINLQQEYA 554

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                  T   + EK  +    + ++  ++  +
Sbjct: 555 VT--INSTDNHDFEKVLLYKKEILKIANELQVL 585


>gi|255321784|ref|ZP_05362939.1| DNA primase [Campylobacter showae RM3277]
 gi|255301264|gb|EET80526.1| DNA primase [Campylobacter showae RM3277]
          Length = 551

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 131/603 (21%), Positives = 250/603 (41%), Gaps = 54/603 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I+ L     I++++G Y+   +   N     +   CPFHD+K PS   + S+G +
Sbjct: 2   IDPKSIERLKAQTDIADIVGHYLPLKKSGAN-----FVCVCPFHDDKNPSMSVSPSRGIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CFSC   GD + F+      S+ E+V+++A +    L  V      KE        ++E
Sbjct: 57  HCFSCKAGGDAIKFVMDYEKLSYPEAVEKIAGLQNFTLNYVRGGEPAKENKH-----ILE 111

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  F+   L          YL  RGI    I+ F+LG+AP+S  ++R    ++      
Sbjct: 112 NANAFYRSLLYKTPAAVE--YLYSRGITDELIDKFELGFAPESAQTIRLLQNEQIEP--- 166

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                + I   N    Y  F NR+ FPI +  G+++ FGGRT+S     KY+NSP++ +F
Sbjct: 167 KEALEVGIVKQNENGIYASFINRITFPIYTHAGRLVGFGGRTISGN-PAKYVNSPQSAVF 225

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K    Y +  A   +           + + II+ EGY+DV+ L +AG  NVV+ LGTAL
Sbjct: 226 DKSTLFYGYHLAKREI----------FTKNQIIITEGYLDVIMLHKAGFNNVVAVLGTAL 275

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL +    ++LCFDGDD G+ AA K+  L+  + I G   + V++  G DP   
Sbjct: 276 TTKHLPLLKRGEISVILCFDGDDAGINAATKSALLLAQNEIDG---SVVIIEGGADPADM 332

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +         ++      + +   +        + P ++ +    ++   + +K   +  
Sbjct: 333 VVAGKIEYLRQIFESGTEIGEFYIRHLASGFDLSRPVQKQKALEAIQAFTSSLK-PVVAN 391

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  +   L+     +        +  ++  +  + +       +              
Sbjct: 392 SYAPLVAKILKIAEGSFWLTRGTNTQAAQERMQAYEMQNLRANSGRK-----------DP 440

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L T+I + ++ +   + L    +     + ++  + +        + E I ++  
Sbjct: 441 LEIQILKTMIENESLKKFILENLKPDYFA--RHRAVYEAITAGADANDPSVREIIFEKYE 498

Query: 543 E-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             +   E+L+ L                   ++ + Y  +    +  + + ++  EI K+
Sbjct: 499 AFKNEEEILQNLKFFKTRF----------YKNLYKKYSASQISLEEKQPILKKINEILKE 548

Query: 602 IAQ 604
           + +
Sbjct: 549 LKK 551


>gi|168704759|ref|ZP_02737036.1| DNA primase [Gemmata obscuriglobus UQM 2246]
          Length = 636

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 139/652 (21%), Positives = 257/652 (39%), Gaps = 66/652 (10%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
           P +  K +     I  ++G Y++            + A CPFH++  PS   +  +  Y 
Sbjct: 5   PVELTKQIKAASDIVAVVGSYINIVPAGKI-----FKAVCPFHNDTRPSLDIDPHRQRYK 59

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           C+SC  +GD  +F+       F E+   LAA AG+ L     +   ++  +T L+ ++  
Sbjct: 60  CWSCGAQGDVFAFVQNHEKVGFREARAILAAKAGIKLDE---QQSPQDHHRTRLLEVMRW 116

Query: 124 ATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A   + +  L+    +    Y+  R +       F +G+AP +   L +    +G   + 
Sbjct: 117 AQAKYAYQYLEGDLGEEARKYMGARKLSGKTTRDFGIGFAPINGDWLVKLALAEGVPTDT 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG----ESVKYLNSPE 238
           ++E GLL   D     YDRFR+R++FPI+  RGQV+ FGGR +          KY NS E
Sbjct: 177 LVEVGLLAARDGQRGYYDRFRDRVMFPIKDVRGQVVGFGGRIMPNNPLAARGPKYYNSAE 236

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LFHK + LY    A +             ++ ++ +VEGY DV+   Q GV  VV+++
Sbjct: 237 TPLFHKKELLYGLDLARHA------------NAGYLAVVEGYTDVMMAHQCGVPQVVATM 284

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTAL    +  L + +P++VL +D D  G     +A+++    +     +    L  G D
Sbjct: 285 GTALNPQHVAQLSRYAPKVVLLYDADAGGFAGVDRALEM---FVSQDVELAVATLPDGLD 341

Query: 359 PDS-FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK- 416
           P    ++  G   F++++  +   +D    +  E     + + +  +   +   +     
Sbjct: 342 PCDLLVKPGGTETFKEVLTSAADALDFKLNKLLERDPNPSVETKRRIADDILGVMASAPP 401

Query: 417 -----DQKLRYYYSQAIRDRLQ---------------QLFQKYITEHSGYGRYWKKNARH 456
                 Q  R      I  RL                   QK            +   R 
Sbjct: 402 MPGAAAQMKRELIVTRIAHRLGFKQETMWVRFGELRKDHEQKQREAQQKEQEGHRDGGRP 461

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSL-REAALLLTLINHPAILQEQYQELADIRYDNNEL 515
                P   L  +   +G     P++  E  L+  L++ P ++      LA     +  L
Sbjct: 462 TVTVRPDAVLPTTERPRGASKAGPAVAAERQLVELLLSDPLLVPVAAARLAPDEITHTGL 521

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           +++ S L+           E + +RL +    E L ++ ++++  G      E       
Sbjct: 522 RRILSELYGVHAAGGVPDLESLRERLAD---REDLFEVSQKLQFVGQQMQDRE------- 571

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
               Q LA   +     + + E  +   Q+    + ++   L+  + +   +
Sbjct: 572 ----QWLARLLKRFAEMKAEAEARRAKEQLAGASD-DEAIELLRRIQQTQQR 618


>gi|212702264|ref|ZP_03310392.1| hypothetical protein DESPIG_00275 [Desulfovibrio piger ATCC 29098]
 gi|212674327|gb|EEB34810.1| hypothetical protein DESPIG_00275 [Desulfovibrio piger ATCC 29098]
          Length = 575

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 159/626 (25%), Positives = 265/626 (42%), Gaps = 68/626 (10%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            RD I+ +   + I++++ +YVD  R         + A CPFH E  PSF  N+ +G +Y
Sbjct: 3   SRDAIRAIKERLNITDIVRRYVDLKRNG-----PRWVAPCPFHQETKPSFSVNEEQGLFY 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV------VDPKIEKKEKIQTDL 117
           CF C   GD   F   + G  F E++++LAA AG+ L           +  ++   +  +
Sbjct: 58  CFGCQASGDIFDFYGRINGLDFRETLEQLAAEAGITLERGPVDKKRQEEDRQRRSSRQTM 117

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +R+ E+A   F  +LK+   +    Y+  RG+    +E F LG+A    +SL   L++ G
Sbjct: 118 LRMYELAAAHFAAALKSPEAEECRAYIQRRGLSPEIVERFGLGWARRDWHSLDLALQRAG 177

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           +      EAGL +   +  + YDRFR RLIFPI++   QVIAFGGR ++  +  KY+NS 
Sbjct: 178 YDMRLAAEAGL-VGRSDRGSVYDRFRGRLIFPIKNLSNQVIAFGGRIIADEDEAKYINSS 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T ++ KG++LY    A   +    R           +L EGYMDVL+L Q G  N V  
Sbjct: 237 DTPIYKKGEHLYGLAQARKGITVKGRA----------LLTEGYMDVLTLHQFGYDNAVGV 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTALT  Q++ L   + ++ L FDGD  G +AA ++ ++    L  G     VL+  GE
Sbjct: 287 LGTALTPDQIKRLSGFTSQLTLLFDGDRAGRKAALRSCEM---LLTRGLACTVVLMPEGE 343

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           D DS +R  G  AFE L  ++   +              T +       H++        
Sbjct: 344 DIDSLLRTQGVEAFEALQAQAPDGLRFCLDVLRALAPRETVEWAKNFLRHVEV------- 396

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +L   Y   +   LQ    +     +   R        R  +                 
Sbjct: 397 PELVSPYVSRLATHLQLSEAELRQGLADSRRPGPDGQTTRPSRARQN------------- 443

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
               +R+  +++  + +P  L +     AD+   ++  ++LW  +     ++  +     
Sbjct: 444 ----MRDRQIMMYAVRYPDRLDDLRDLGADLALQSDIARQLWDKIEEWGSDEAPY----- 494

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                          LD++ ++   +    EA   D       AL         + Q++ 
Sbjct: 495 --------------HLDQREKNFWSFCRGAEAAPRDDGDRELAALRHDLDAYYAATQRQS 540

Query: 598 IEKQIAQVTAKGEAEKTAILISILHE 623
           +   + Q T  G+       +  L E
Sbjct: 541 VTAALRQNTGTGDFAADLEYLRALQE 566


>gi|313897468|ref|ZP_07831011.1| DNA primase [Clostridium sp. HGF2]
 gi|312957838|gb|EFR39463.1| DNA primase [Clostridium sp. HGF2]
          Length = 588

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 151/627 (24%), Positives = 253/627 (40%), Gaps = 49/627 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I ++IG+YV   R+        Y   CPFHD+  PS      K  
Sbjct: 3   RLSEQEISQIRAKADIVDVIGRYVPLTRKGK-----SYKCVCPFHDDHDPSMSIAADKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRL 120
           Y CF C   G+   F+      SFIE+V ++A  AGV L    D     K+     L + 
Sbjct: 58  YKCFVCGAGGNVFMFVQNYEKISFIEAVYKVAEYAGVTLEHTLDVTPRIKDPHLQALHKA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A +F H+ L     K +  YL  R I    I+ F++GY P    +L   L  K  ++
Sbjct: 118 CREAIEFTHYQLDTLDAKNVKEYLMRRNITEEIIKRFEIGYNPMD-DALYRFLHAKKHAD 176

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + ++ AGL+          D F +R++ PI    G+ + F  R +++ E  KY+N+ ET 
Sbjct: 177 DDLVSAGLVRVTSLGMK--DVFSHRIMIPIHDEFGEPVGFTARRVAENEEAKYINTTETD 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++ KG  ++N+  A    +K+ +            LVEG MDVL+L +  + N V++LGT
Sbjct: 235 IYKKGNLIFNYHRAKQEARKAKKA----------YLVEGAMDVLALEKVELHNAVATLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+T+ QLRLL  L   IV+C+DGD  G  A YK   +             V    G DPD
Sbjct: 285 AMTKEQLRLLQLLHVPIVVCYDGDKAGRNATYKFGKMAREAQ---LPFEIVDNKYGLDPD 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I  YGK     L+ +++  +D L++      + +   ++ E    +   I  ++D   
Sbjct: 342 EVIDVYGKDELRALLDKTISWIDFLFEYLLGRYNLDNYSQKKEFAQEMALEIQALQDDFE 401

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   +R+  +  F   + +     R   +    R       +  +S           
Sbjct: 402 KQSYFIRLRELTE--FDMQVEQPKEERRAIHQPQPPRQSFLTFPKSGRSH---------- 449

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  +L  ++N  A      +EL  ++  ++   KL  ++   +         E+   
Sbjct: 450 --AEHEILSQMLNGIAASNLFKEELGFLK--DDTGNKLAMYIIDYYRTHTTLAVAELLDV 505

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + E     LL ++              E    DV     Q     ++   L  + + + K
Sbjct: 506 IREEDVKALLLEITNW-----------ELAREDVDMAVLQEAIAKEKSCFLDDKIQLLNK 554

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQ 627
           +I  V    E  K A+  + L +   +
Sbjct: 555 KIRSVNDPMEKAKLAVEKNQLIKEREE 581


>gi|309775525|ref|ZP_07670525.1| DNA primase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916619|gb|EFP62359.1| DNA primase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 590

 Score =  297 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 148/630 (23%), Positives = 254/630 (40%), Gaps = 52/630 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I ++IG+YV   R+        Y   CPFHD+  PS      K  
Sbjct: 5   RLSEQEISQIRAKADIVDVIGRYVPLTRKGK-----SYKCVCPFHDDHDPSMSIAADKQI 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRL 120
           Y CF C   G+  +F+      SFIE+V ++A  AGV L        + K+     L + 
Sbjct: 60  YKCFVCGAGGNVFTFVQNYEKISFIEAVYKVAEYAGVTLEHTLDIAPRIKDPHLLALHKA 119

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A +F H+ L     K +  YL +R I    I  F++GY P    +L   L  K  ++
Sbjct: 120 CREAIEFTHYQLDTLDAKNVKEYLLKRNITEEIIRRFEIGYNPMD-DALYRFLHAKKHTD 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E I+ AGL           D F +R++ PI  + G+ + F  R +++ E  KY+N+ ET 
Sbjct: 179 EDIVAAGLARVTSIGMK--DVFAHRIMIPIHDAYGEPVGFTARRVAENEEAKYINTTETD 236

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++ KG  ++N+  A    +K+ +            LVEG MDVL+L +  + N V++LGT
Sbjct: 237 IYKKGDLIFNYHRAKPEARKAKKA----------YLVEGAMDVLALEKVELHNAVATLGT 286

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+T+ QLRLL  L   IV+C+DGD  G  A YK   +             V    G DPD
Sbjct: 287 AMTKEQLRLLQLLHVPIVVCYDGDKAGRNATYKFGKMAREAQ---LPFEIVDNKYGLDPD 343

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I  YGK   + L+ +++  +D L+       +     ++ E    +   I  ++D   
Sbjct: 344 EVIDVYGKDELKALVEKTISWIDFLFVYLLGRYNLENYSQKKEFAQEMAQEIQALQDDYE 403

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   +R+  +  F   + +     R  ++    R       +  +S           
Sbjct: 404 KQSYFIRLRELTE--FDMQVEQPKEERRTVQQQQPLRQSFLTFPKSGRSH---------- 451

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  +L  ++   A      +EL  ++  ++   KL  ++   +         E+   
Sbjct: 452 --AEHEILSQMLCGIAASNLFKEELGFLK--DDISNKLAMYIIDYYRTHTTLAVAELLDV 507

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + E     LL ++              E    DV     Q     ++   L  + + + K
Sbjct: 508 IREEDVKSLLLEIANW-----------ELAREDVDMAVLQEAIAKEKSCFLDDKIQLLNK 556

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +I    +  +  + A L    +++  +  +
Sbjct: 557 KIR---SVNDPMEKARLAMEKNQLIKEREE 583


>gi|323342094|ref|ZP_08082327.1| DNA primase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464519|gb|EFY09712.1| DNA primase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 587

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 139/617 (22%), Positives = 249/617 (40%), Gaps = 41/617 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I D+     I + I +Y+   ++  N     YW  CPFHD+  PS   +  +  
Sbjct: 3   RMPEELINDIRSKTDIVDTISRYMTLSKKGKN-----YWGVCPFHDDNNPSMSVSPDRQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRL 120
           Y CF C   G+  SF+       FI++V + A+   + +   +P+     ++ +  L + 
Sbjct: 58  YKCFVCGAGGNVFSFVKDFEKIGFIDAVVKTASFIDIDVTEYEPQNTVPVDEEKLKLFQA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           ++    F    L     K     L+ RG     I+ F +G A       + +L  KGF+E
Sbjct: 118 LDETQKFTEFQLYTKTGKDALSKLEARGYSMELIKKFGIGVAFGDNQLSK-YLIAKGFNE 176

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++++A L+   D      D F  R++FPI    G+VIAF  R LS    VKY+N+ ET 
Sbjct: 177 KELVDADLVRVTDRGIE--DVFYQRIMFPIYDRHGRVIAFSARALSDENKVKYINTSETR 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           L+ KG  +YN   A    +K            FI++ EG  D ++  ++G  N VS LG 
Sbjct: 235 LYTKGLTIYNLHNAKEAARK----------HDFILVAEGVTDTIAFTKSGYDNTVSLLGV 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T  Q+++L + S  +VL FDGD  GL A Y    + +        V       G DPD
Sbjct: 285 ACTNEQIQMLKQCSSNVVLAFDGDRAGLEATY---QVGMKLRKAHCSVTVWYNDTGLDPD 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             IR YG    +K + + +  +D L      N   ++ D R  +   + + + + +D+  
Sbjct: 342 ECIREYGIERVQKGVDDRINWLDFLMSYGIGNYGLDSFDNRKRVVQFMIDHLKN-EDELE 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           + YY + + D+    +     + +      +++         +      ++         
Sbjct: 401 QSYYLKKLSDKTNFEYSVLSQQLNARSVMIERDTPLISNNVSNTMEFNVNIP-------- 452

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E A+L  ++           +L  +   ++        +   +  Q+     +I   
Sbjct: 453 ---ERAILRQMLISKEAAYLYRDQLGFL--VSDLATDFALIILDCYRNQEVIEIADILSL 507

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE--- 597
                  +    ++      G   A+ E NI  +R           + R+L + K +   
Sbjct: 508 NISEKMKKFAIDIESSDLLDGYNRASMEQNINLIRNHLVVMGIHDMKGRVLQQDKIDDQA 567

Query: 598 --IEKQIAQVTAKGEAE 612
             +E+ I Q+  K + E
Sbjct: 568 ALLEEAIKQLRNKNKRE 584


>gi|257464030|ref|ZP_05628415.1| DNA primase [Fusobacterium sp. D12]
 gi|317061551|ref|ZP_07926036.1| DNA primase [Fusobacterium sp. D12]
 gi|313687227|gb|EFS24062.1| DNA primase [Fusobacterium sp. D12]
          Length = 608

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 152/637 (23%), Positives = 271/637 (42%), Gaps = 43/637 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           + ++ I  LL  + I +++G++V+  +   N     Y   CPFH +  PSF  N  K   
Sbjct: 2   FRQEDIDRLLEQLNIVDVVGEFVELKKSGAN-----YKGLCPFHADNNPSFSVNPQKNIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ +SF S     SF +SV+ LA    +PL  +  + +++ +       ++E
Sbjct: 57  KCFVCGAGGNPISFYSKYKKISFQDSVRELAKKYHIPLQEI-KQNKEENEKFERYYSIME 115

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F + +     +    YL +R +    I    LGYA  S   L  HL ++G   E+
Sbjct: 116 EAHQYFTNLIFENVGREALEYLAKRKVGPKLIRENNLGYASSSWDQLFNHLIERGCKAEE 175

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241
           +   GL+     +   YD FRNR+IFPI S +G+VIAFGGRTL + +   KY+NSP+T +
Sbjct: 176 LELLGLVKKR-ENGQYYDVFRNRVIFPIYSIQGRVIAFGGRTLEQSKEIPKYINSPDTPI 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KGK LY              +        + +++EGYMDVLS    G    ++ LGTA
Sbjct: 235 FKKGKGLYGL-----------ERVSSIKQKDYAMMMEGYMDVLSTVSYGFDTSIAPLGTA 283

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT  Q+RLL + +  ++L FD D+ G  AA +AI L          +  + L   +DPD 
Sbjct: 284 LTREQVRLLKRYTDNVILSFDSDNAGQMAAERAIFL---LKEESFNIRVLQLHGAKDPDE 340

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           F++ +G+ AF K + E L   D L+    +  S +    + +     +   + +  +  +
Sbjct: 341 FLKKFGREAFLKEVQECLEAFDFLYAYYKKEYSLDDIMSKQKFIERFQEFFHSLSKELEQ 400

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y Q   D L    Q         GR    ++         Q  +   +      +  S
Sbjct: 401 ELYLQKFSDLLGMDIQVLRPLLFPKGRKISFHS--------GQETVAEEINSQHEQEVYS 452

Query: 482 LREAALLLTLI----NHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           + E   +   I     H      + Y  L ++ + +   +K++  L     +++      
Sbjct: 453 VLEKLSIQISILDLQQHKEATDAKYYHFLKEMPFQSEFTRKIFQDLSQYEKDKEEQSRNT 512

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD-----VRQGYQQALALYKRFRLL 591
           + + + E    E     +++   A L     +  I +      R   ++           
Sbjct: 513 MIENIREMFQKENYNTEEKEYLFALLSECLEQEKIEEQKIIVCRDWARETFKNTMTTNPF 572

Query: 592 SR-QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            + Q +++E+++  +  K +  +   +     ++  +
Sbjct: 573 KQLQLKQLEQKM--LKNKKDMGQFLEMYQQYLKLREE 607


>gi|262280061|ref|ZP_06057846.1| DNA primase [Acinetobacter calcoaceticus RUH2202]
 gi|262260412|gb|EEY79145.1| DNA primase [Acinetobacter calcoaceticus RUH2202]
          Length = 622

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 166/684 (24%), Positives = 277/684 (40%), Gaps = 124/684 (18%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+  I  +L    I +LIGQ V   +         Y  CCPFH EK+PSFH    K 
Sbjct: 1   MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKSPSFHVYRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115
           +Y+CF C   G+ + FL  +   +FI+ ++ L++ AGV LP  + + +K    +      
Sbjct: 56  YYHCFGCQANGNAIRFLMDIDNRNFIDVMKELSSSAGVELPKDNTENKKLSYTRQVTKPP 115

Query: 116 ------------------------------------------------DLIRLIEVATDF 127
                                                           +L  L+E    F
Sbjct: 116 VAKANTAEPVVPQQPIDESYNTLEPVFFDDPFAQFEQPFNFEEPVQEGNLYDLLENIAQF 175

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
           + H L     ++   Y  +RG+ +  I+ ++LGYAP+       HL +    +   ++  
Sbjct: 176 YEHQL--PNSQKAKNYFKQRGLTNQTIQFWRLGYAPEDWQ----HLEKAFPYDIDGLKQL 229

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247
            LI   ++   +D  R+R+IFPIR  +G+V+ FGGR L+     KY+NSP++ +FHK + 
Sbjct: 230 GLIRSSDNGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQL 289

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           LY  +                  SS  ++VEGYMDV++L Q G+   V++LGTA     L
Sbjct: 290 LYGLYEGRKL------------KSSDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 337

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
            +L+K + RI + FDGD  G +AA + +++ L  L  G  + F +L    DPDS IR  G
Sbjct: 338 NILFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 397

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQ 426
              F+KL+ +S  L D ++   T     +TP+ ++ +   L+     +      RY  +Q
Sbjct: 398 LENFQKLLQQSPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLNQ 457

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
           + R++L                        R     S     S  +  K        E  
Sbjct: 458 SFREKLGL--------------------GKRFTPQISHDASLSFNIHTKD-------EDF 490

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +  L++HP  L   ++ L    + +  L K+   + +   +      E     +     
Sbjct: 491 AIAILMHHP-FLYIHFEGLRAYIHQDELLAKVL-AILNRIFDDLPDDQELATYYVLGACS 548

Query: 547 G--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                +  + ++     L  A       +V     Q  AL  + R L ++ +     I  
Sbjct: 549 SYCHEIADIMQRTNIQALTQAP------EVADKLAQEYALGLKERYLRQKLKSPISLI-- 600

Query: 605 VTAKGEAEKTAILISILHEVHIQI 628
                   ++  L   L+E+  QI
Sbjct: 601 --------ESRNLRQQLNELTKQI 616


>gi|308233951|ref|ZP_07664688.1| DNA primase [Atopobium vaginae DSM 15829]
 gi|328943963|ref|ZP_08241428.1| DNA primase [Atopobium vaginae DSM 15829]
 gi|327491932|gb|EGF23706.1| DNA primase [Atopobium vaginae DSM 15829]
          Length = 620

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 142/648 (21%), Positives = 264/648 (40%), Gaps = 57/648 (8%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           D  + +   +    L+ + V    R       D W CCPFH EK+PSFH N S G + CF
Sbjct: 4   DDKERVRAAVNFEQLVAETVPLRPRGA-----DLWGCCPFHHEKSPSFHINPSTGLWKCF 58

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
            C + GD  +++       F ++++ LA   GV L     +       +  L   ++ A 
Sbjct: 59  GCGLGGDVFAYIMQREHLEFPDALKFLADKYGVELTQTSHRSS-HTPKRVRLYACMQAAQ 117

Query: 126 DFFHHSL---KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           +F+  +L   ++ + +    YL  R   S   + + LG+A      L   L ++GF+ ++
Sbjct: 118 EFYERTLLCSRSTKAQEARMYLQGRSFGSAVSKRWHLGFAL-GSNELLAELTKQGFTRQE 176

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++   L           +RF +R++FPI   +G+ IAFGGR +      KYLN+ +T+LF
Sbjct: 177 LLACDLARL--TPQGLRERFFDRVMFPIHDEQGKCIAFGGRVI-GDGKPKYLNTKDTVLF 233

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KGK+L+ F  A N L            S   I+ EGY DV+S+ +AG  N V++LGTAL
Sbjct: 234 SKGKHLFAFDEAKNSL----------VVSGTAIVCEGYTDVISMHRAGFTNCVAALGTAL 283

Query: 303 TEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           T   ++L+    + +I+  FDGD  G +AA +A+            +  V+L +  DP  
Sbjct: 284 TLDHIKLIERFATRKIICMFDGDAAGQKAAERAVQ---FLDQTRLEMLCVVLPQNLDPAE 340

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           F+  + K    +++  + PL+D +  +  E+       +R +        +  +K     
Sbjct: 341 FLSAHSKEELAEILSHARPLLDFVLAKRLEHFDTRIEGQRVQALQSTSQLLAPLKHSLFL 400

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKK------NARHRDQKGPSQRLMQSSLVKGK 475
             Y+  + D L               +   +      NA    Q       + S+  +  
Sbjct: 401 DDYASQVADLLDMDVNHVKASIKAAHKEATRAYTLTNNAPVGLQTSIQNNTLSSNSSRHA 460

Query: 476 LSKKPSL---------REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD- 525
           L+ +  L          E  LL  +   P ++ +    +A   + +   ++L   + +  
Sbjct: 461 LTPQHLLSADARMQKSSELELLSLMAAKPQLMHQYQDRIAHFNWLDASHEQLAWAMLATP 520

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
                  +     + +       LL          G   + +        Q    ++ L+
Sbjct: 521 VGATPAQVVGAATRAVPSAP--NLLAS--------GRVVSFSNLAPEMQFQFLVASVDLW 570

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                  R+ ++I+ Q+    +    E++  L+    ++   I +++S
Sbjct: 571 SSI----REVKKIKTQLKLARSSLTFEESQKLLEKATQLQKHISELKS 614


>gi|293400670|ref|ZP_06644815.1| DNA primase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305696|gb|EFE46940.1| DNA primase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 589

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 144/631 (22%), Positives = 255/631 (40%), Gaps = 50/631 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I  +     I +++G+YV   R+  N     Y A CPFHD+  PS   N  K  
Sbjct: 3   RLSEQEINQIRAKADIVDVVGRYVPLTRKGRN-----YVAQCPFHDDHDPSMSVNADKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIRL 120
           + CF C   G+   F+      SFIE+V ++A  AGVP+        KK       L + 
Sbjct: 58  FKCFVCGTGGNVFGFVQKYEKISFIEAVYKVAEYAGVPIEHSLALPVKKIDPHLAALYKA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            +   ++ H+ L     + +  YL +R +    I+ F +GY P+   +L   L  K   +
Sbjct: 118 NQETIEYTHYQLDTLDARHVKEYLYKRNLTDAIIKTFAIGYNPEE-DALYRFLHAKKIPD 176

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             I+ AGL           D F NR++ PI  + G  + F  R + + +  KY+N+ ET 
Sbjct: 177 SDILAAGLARMSSMGMK--DVFANRIMIPIHDADGHPVGFTARRIKESDEAKYINTTETD 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++ KG  ++N+  A    +K+ +          + LVEG MDVL+  + G+ N +++LGT
Sbjct: 235 VYKKGDLIFNYHRAKPEARKAKK----------VFLVEGAMDVLAFEKVGLHNALATLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A+T+ QL+LL  L   IV+C+DGD  G  A YK   + +           V    G DPD
Sbjct: 285 AITKTQLQLLKMLHVPIVVCYDGDMAGKNATYKFGKMAVQEQ---IAFEIVDNRYGLDPD 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I  YGK     L   +L  +D L++      + +   ++ E  + + + I H++D   
Sbjct: 342 EIIDAYGKDELIALSSRTLSWIDFLFEYLLTRYNLDNYSQKKEFAMEMADAIKHLQDDFE 401

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   +R+      Q+  T  +            R  +       +S L   K  +  
Sbjct: 402 KESYYIRLRELTDFDMQEKNTAIN-----------ERQIQKKETFGKRSFLTFPKSGRSH 450

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  +L  +++  +      +EL  ++  ++   KL  ++   +         ++   
Sbjct: 451 --AEYEILSQMLSGISASNYYKEELGFLK--DDTCNKLAIYIIDYYRTHTLMEIADLLDT 506

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + E     L   +              E    +V     +      +   L  + + + +
Sbjct: 507 IKEETVKTLALDIADW-----------ELAREEVDMEVLKEAVEKVKDCFLDDKIQMLNE 555

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +I  V    E  K A   + L  +  +  ++
Sbjct: 556 KIKTVNDPMEKAKLAGEKNQL--IKERGERL 584


>gi|78044503|ref|YP_359315.1| DNA primase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996618|gb|ABB15517.1| DNA primase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 575

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 154/612 (25%), Positives = 262/612 (42%), Gaps = 57/612 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M++ ++ ++ +   + + +L+ +Y    +   N     Y   CPFH+EKTPSF  +  K 
Sbjct: 1   MSF-QEVVEKIRNRVDLVDLVSEYTRLKKSGRN-----YVGLCPFHNEKTPSFSVSPEKN 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            YYCF C   GD  SF+      +F E+V  LA    + LP       K       L R+
Sbjct: 55  LYYCFGCQKGGDIFSFIMEKERLNFKEAVFYLAKKYNIELPETG----KAYNKNEHLYRM 110

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + +A  F+H  LK     +   YL  RGI    ++ F LG+AP S  +L   L  KG++ 
Sbjct: 111 LLLAAKFYHEILKTEAAGKARDYLQSRGITEETVKDFMLGFAP-SAKALPAFLSSKGYNP 169

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            ++++ G++    +    +DRF  RLIFPI    G+V+ FGGR L   E  KY NSP+++
Sbjct: 170 GELVKIGIVTKSYSG-NLHDRFAGRLIFPIFDREGRVVGFGGRAL-GEEKPKYFNSPQSV 227

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F KGK  Y F  A   ++               ILVEGY DV+SL QAGV+N ++ LGT
Sbjct: 228 IFDKGKLFYGFKQARTTIR----------EKRQAILVEGYFDVISLHQAGVKNAIACLGT 277

Query: 301 ALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           A TE  L  L        I+L +D D  G +AAY+A+++++        +  + L   +D
Sbjct: 278 AFTEEHLNFLKNYGYIEEIILAYDSDQAGEKAAYRALEMLVRASA-DLSIKIIRLGEFKD 336

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD  I+  G TAF + I ++    + L + E + +S    +E+  L   L   +    ++
Sbjct: 337 PDELIKNRGATAFLEEIEKAKTPAEFLLELELKEKSSLNLNEQRALLKKLIPYLVLEYEK 396

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                      +R+  +  K            ++     ++K  +      ++     + 
Sbjct: 397 TPA-----LFAERIGGIASKLKMSEGALVDEIRREIYKNEEKSLNNSSFGENITNEHKNY 451

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E+ LL  L+ +P   +E   +     +           +F+   E K+   E+  
Sbjct: 452 GLLKVESELLGLLLEYPEYQKEFLNDFFFYEFQGKN-----QEVFNYLKENKFPDRED-- 504

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                                  L     E +   + +GY + L  + +     +Q + +
Sbjct: 505 ---------------PLYSYMTYLRINCPEGDPKTLYEGYVRYLEEHYK----KQQVQRL 545

Query: 599 EKQIAQVTAKGE 610
             +I+    +G 
Sbjct: 546 TLEISLAEKEGN 557


>gi|257453205|ref|ZP_05618504.1| DNA primase [Fusobacterium sp. 3_1_5R]
 gi|317059739|ref|ZP_07924224.1| DNA primase [Fusobacterium sp. 3_1_5R]
 gi|313685415|gb|EFS22250.1| DNA primase [Fusobacterium sp. 3_1_5R]
          Length = 608

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 146/632 (23%), Positives = 273/632 (43%), Gaps = 33/632 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           + ++ I  L+  + I +++G++V+  +   N     Y   CPFH +  PSF  N  K   
Sbjct: 2   FRQEDIDRLMEQLNIVDVVGEFVELKKSGAN-----YKGLCPFHADNNPSFSVNPQKNIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ ++F S     SF E+V+ LA    +PL  +  + +++ +      +++E
Sbjct: 57  KCFVCGAGGNPITFYSKYKKISFQEAVRELAKKYHIPLQEI-KQNKEENEKFERYYKIME 115

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F H +     +    YL +R +    I+   LGYA  S  SL  HL + G+  E+
Sbjct: 116 EAHQYFSHLIFENIGREALEYLVKRKVGPKLIQENNLGYASPSWDSLFNHLIELGYQSEE 175

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241
           +   GL +    +   YD FRNR+IFPI S +G+VIAFGGRTL + +   KY+NSP+T +
Sbjct: 176 LELLGL-VKRRENGQYYDVFRNRVIFPIYSIQGRVIAFGGRTLEQDKEIPKYINSPDTPI 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KGK LY              +       ++ +++EGYMDVLS    G    ++ LGTA
Sbjct: 235 FKKGKGLYGL-----------ERVSGIKQKNYAMIMEGYMDVLSTVSYGFDTSIAPLGTA 283

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT+ Q++LL + +  ++LCFD D+ G  AA +AI L       G  +  + L   +DPD 
Sbjct: 284 LTKEQVKLLKRYTENVILCFDSDNAGQMAAERAIFL---LKEEGFNIRVLQLKGAKDPDE 340

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           F++ +GK AF + +   L   D L+    +  + +    + +     +   + +  +  +
Sbjct: 341 FLKKFGKEAFLQEVQACLEAFDFLYSYYKKEYALDDIMSKQKFVERFQEFFHSLSKELEQ 400

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y     D L    Q              +N  H  ++   + +      +     +  
Sbjct: 401 ELYLHKFSDLLGMDVQVLRPLL---FPKGTRNFSHLRERKQEEEIFVQDFQELYSVLEKL 457

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             + ++L    +  +   + Y  L D+ +  +  +K++  L      +       I + +
Sbjct: 458 SVQISILDLQQHKESEEAKYYHFLKDMPFQFDFTRKIFQDLEKYEQGRDTQSRNTILESI 517

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL------SRQK 595
            E    +     +++     L        I + +    +  A       +        + 
Sbjct: 518 REIFTKDNYTIEEKEHLFELLSECLERDKIEEQKHIVCRDWAREMFKNTVVTDPFKQLRL 577

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +++E++I  +  K +  +   +     ++  +
Sbjct: 578 KQLEQKI--LKNKKDMGQFLEMYQQYLKLREE 607


>gi|78357096|ref|YP_388545.1| DNA primase [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78219501|gb|ABB38850.1| DNA primase [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 576

 Score =  296 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 156/629 (24%), Positives = 268/629 (42%), Gaps = 64/629 (10%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           ++ +   + ++ L  +YV+  R         + A CPFH E  PSF  N+ +GF+YCF C
Sbjct: 9   VQAIKSRLNLAELARRYVELRRIGN-----RWMAPCPFHQETKPSFSINEEEGFFYCFGC 63

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVAT 125
              GD + F S + G  F E++++LA  AGV L     DP+ E++ K ++    + E+AT
Sbjct: 64  QASGDIIDFYSRINGLEFREALEQLAEEAGVTLGQRQADPREEQERKFRSRCYEMYELAT 123

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
             F  +L++A       Y+ +RGI    +  F+LG++     +L + L++ G++      
Sbjct: 124 KHFRRNLQSAAGAECRSYIADRGIPDEIVSSFELGWSKREWAALSDELQRAGYAPRDATR 183

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
           AGLL   D+    YDRFR RLIFPI++  G+VIAFGGR +S  +  KY+NS ++ ++ KG
Sbjct: 184 AGLLSSNDSG-RMYDRFRGRLIFPIKNLSGKVIAFGGRIISSEDQAKYINSSDSTIYKKG 242

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
            +LY  + A   + +  R           +L EGYMDVL+L Q G  N    LGTALTE 
Sbjct: 243 DHLYGLYQARRSISQHKRA----------LLTEGYMDVLALHQFGHTNACGVLGTALTEA 292

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
           Q++ L      + L FDGD PG +AA ++ +++L     G     VL+  GED DS +  
Sbjct: 293 QVKRLGGFCSHVDLLFDGDGPGRKAALRSCEMMLV---KGMDCRVVLMPEGEDIDSLLHQ 349

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            G  AF +L   +   ++   +   ++ S        E+       +  +    L  +Y 
Sbjct: 350 QGAQAFRELTESAPDGLEYCIRTLRDSYSPR------EILDWTAAFLRQLDRPDLASFYV 403

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             +   L           S      ++     ++                 + K    E 
Sbjct: 404 TRLAGGLGLQEADLRASLSSPAGRNRQQRAAGNRV---------------QTGKEKKLEM 448

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            L+  L+  P  +       A+    +   + +W  L +   ++             E  
Sbjct: 449 HLMEFLVRFPHHISNLQARGAEEVLVSRWARDMWDKLLAFGADEAP-------NHFSEE- 500

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
                           LW     A+ +      Q+   LY +   L+++++     +A +
Sbjct: 501 -------------QKALWIRCRVASPIPAENERQELEDLYSKLAELNQKEQS-RMMLAAL 546

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQ 634
                   +     +L  +   + + + Q
Sbjct: 547 RQLSSDANSEAGFELLRAMKDNLGRSDGQ 575


>gi|33519537|ref|NP_878369.1| DNA primase [Candidatus Blochmannia floridanus]
 gi|33517200|emb|CAD83582.1| DNA primase [Candidatus Blochmannia floridanus]
          Length = 588

 Score =  296 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 148/596 (24%), Positives = 276/596 (46%), Gaps = 38/596 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+  I +L+    I ++I Q +   ++ +N     + ACCPFH EKTPSF  N  K F
Sbjct: 4   RIPQALIDELISRTNIVHIINQRIPLKKQGSN-----FIACCPFHVEKTPSFTVNLKKKF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCFSC   G+ ++FL      +FIES+Q+L+ + G+ +     K +        +   +
Sbjct: 59  YYCFSCGSHGNIINFLMHHDQLTFIESIQQLSILHGISIKHFLYKTKNNNYHGDIIYTFM 118

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
               +++ ++LK+ +    + YL  RG+   +I  FK+G+AP    ++  ++    ++ +
Sbjct: 119 RDICNYYQNNLKHKKYSYAYKYLKNRGLTDSSIIDFKIGFAPMGWNNILTNINLSSYNHK 178

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPETI 240
            I ++G+ I    +   YDRFRNR++FP+ +  G++IAFGGR +       KYLNSP+T 
Sbjct: 179 LIHQSGMWIKYHQNKK-YDRFRNRIMFPMHNKLGKIIAFGGRLIQNNNTEPKYLNSPDTY 237

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY F+              +  +  +I+LVEGY+DV+ L Q GV   V+SLGT
Sbjct: 238 IFKKNQYLYGFYE----------ICTKYKNIPYILLVEGYIDVIILTQFGVNYAVASLGT 287

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ++T   ++L++ ++ +++ C+DGD  G +AA++ ++++L +L     + F+ L   EDPD
Sbjct: 288 SITINHIQLIYSVTNQMICCYDGDSAGKKAAWRTLNIILPYLHDHREICFMFLPVKEDPD 347

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           + IR  GK  F K I ++  L + ++          T + R +L   +   IN I  Q L
Sbjct: 348 TLIRKIGKDNFLKQISKAQSLSNFIFDTLLHKVKIQTLEGRVKLSHLILPMINKIPGQIL 407

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + +++  L +  + +                        + S++    ++   
Sbjct: 408 KLCLLQQLSNKIGILDENKLNQLLIQ----------------HSPTLTSNVQNNDITYNI 451

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                 L+  LI +P + +            +N + +    L        Y   E++   
Sbjct: 452 KH---ILIGLLIQNPKLAKLVPTIKGLKECKDNIIIEFVK-LVKLCKSYPYLTTEQLIHY 507

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEA-NIVDVRQGYQQALALYKRFRLLSRQK 595
             +         + R      + +        +D        +  +++  L+SR +
Sbjct: 508 YHQHDENNCFTNIIRLAHWNHMITDDMITVTFIDTLTKLYDLILEHRQNILISRDR 563


>gi|257467205|ref|ZP_05631516.1| DNA primase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 608

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 145/632 (22%), Positives = 270/632 (42%), Gaps = 33/632 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           + ++ I  L+  + I +++G++V+  +   N     Y   CPFH +  PSF  N  K   
Sbjct: 2   FRQEDIDRLMEQLNIVDVVGEFVELKKSGAN-----YKGLCPFHADNNPSFSVNPQKNIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ ++F S     SF E+V+ LA    +PL  +  + +++ +      +++E
Sbjct: 57  KCFVCGAGGNPITFYSKYKKISFQEAVRELAKKYHIPLQEI-KQNKEENEKFERYYKIME 115

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  +F H +     +    YL +R +    I    LGYA  S  SL  HL + G+  E+
Sbjct: 116 EAHQYFSHLIFENIGREALEYLVKRKVGPKLIRENNLGYASPSWDSLFNHLIELGYQSEE 175

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241
           +   GL +    +   YD FRNR+IFPI S +G+VIAFGGRTL + +   KY+NS +T +
Sbjct: 176 LELLGL-VKRRENGQYYDVFRNRVIFPIYSIQGRVIAFGGRTLEQDKEIPKYINSSDTPI 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KGK LY              +       ++ +++EGYMDVLS    G    ++ LGTA
Sbjct: 235 FKKGKGLYGL-----------ERVSGIKQKNYAMIMEGYMDVLSTVSYGFDTSIAPLGTA 283

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT+ Q++LL + +  ++LCFD D+ G  AA +AI L       G  +  + L   +DPD 
Sbjct: 284 LTKEQVQLLKRYTENVILCFDSDNAGQMAAERAIFL---LKEEGFNIRVLQLKGAKDPDE 340

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           F++ +GK AF + +   L   D L+    +  + +    + +     +   + +  +  +
Sbjct: 341 FLKKFGKEAFLQEVQACLEAFDFLYTYYKKEYALDDIMSKQKFVERFQEFFHSLSKELEQ 400

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y     D L    Q              +N  H   +   + +      +     +  
Sbjct: 401 ELYLHKFSDLLGMDVQVLRPLL---FPKGTRNFSHVRARKQEEEIFVQDFQELYSVLEKL 457

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             + ++L    +  +   + Y  L D+ +  +  +K++  L      +       I + +
Sbjct: 458 SVQISILDLQQHKESEEAKYYHFLKDMPFQFDFTRKIFQDLEKYEQGKDTQSRNTILESI 517

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL------SRQK 595
            E    +     +++     L        I + +    +  A       +        + 
Sbjct: 518 REIFTKDNYTIEEKEHLFELLSECLERDKIEEQKHIVCRDWAREMFKNTVVTDPFKQLRL 577

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +++E++I  +  K +  +   +     ++  +
Sbjct: 578 KQLEQKI--LKNKKDMGQFLEMYQRYLKLREE 607


>gi|298372238|ref|ZP_06982228.1| DNA primase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275142|gb|EFI16693.1| DNA primase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 690

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 157/689 (22%), Positives = 280/689 (40%), Gaps = 74/689 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                +  +     I  ++G +V   +R  N         CPFH+EKT SF+ + ++G +
Sbjct: 2   IDPQTVAKIHDAAKIEEVVGDFVSLRKRGANL-----VGLCPFHNEKTGSFNVSPARGIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
            CF C   G+ + FL      S+ ++++ LA    + +   +   E+K +   + +++ +
Sbjct: 57  KCFGCGEGGNAVRFLMLHEHLSYPDALRYLAKKYHIEIVEKELTDEEKSQLSDRDNMLNV 116

Query: 121 IEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            E A ++F  +L+    + +   YL ERG     I  F LGY+ +S         ++GF+
Sbjct: 117 NEFAVNYFVKNLEKDEGRAVGRAYLHERGFSDDIIAKFALGYSVNSYDDFYNEAHRRGFA 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
           ++ ++  GL+   D   T  DRFR R++FPI S  G+VI FGGR L K +   KY+NSPE
Sbjct: 177 DKYLVATGLVFKNDKG-TFTDRFRGRVMFPIHSLAGKVIGFGGRILEKNDKLAKYVNSPE 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + +++K   LY  F A N + K  R            LVEGY DV+S+ QAGV+NVV+S 
Sbjct: 236 SEIYNKSNELYGIFFAKNQIVKQDR----------CFLVEGYTDVISMHQAGVENVVASS 285

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT+ Q++L+ + +  I + +DGD  G++A+ + ID+    L  G  +  VLL  G+D
Sbjct: 286 GTSLTDGQIKLIHRFTQNITVIYDGDAAGIKASIRGIDM---LLEYGMNIKAVLLPDGDD 342

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDSF R    + F + I                + + N P ++A +   +   I  I +Q
Sbjct: 343 PDSFARKNNASDFIEYIERHQVDFIEFKINMMSDEAKNDPVKKAAMIGDVIKSIAIIPNQ 402

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA---------------RHRDQKGPS 463
            +R  Y +    RL+        E +   R   ++                ++   + P 
Sbjct: 403 IIRATYVKECASRLEIDEVVIYNEINKILRKRHEDEFKRRESQTNRAANALQNTATQAPD 462

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTL-----------------INHPAILQEQYQELA 506
                      K        E  L+  +                 +N    +      + 
Sbjct: 463 NESATLQQATRKDRNALYKHEKELIRFVVREGQKRLVEADNGQGYLNVGEYIYNVL-NIN 521

Query: 507 DIRYDNNELQKLWSFLF-----------SDFVEQKYFLPEEI-HQRLCERGFGELLKQLD 554
            +R       ++                + F          +  + L ++    ++ +  
Sbjct: 522 GLRIQTPVFARILEEFHCNADNAEFDCENYFKNHADLDINALAIEFLTDKY---IVGKRF 578

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                          +     +       L        ++ EE E  + Q+ +  +    
Sbjct: 579 ASRPPKEEIDVPDIVDDDPRSEVLHSFAKLRLEKEKDKQRLEETE-ALRQLKSSLDKIIL 637

Query: 615 AILISIL-HEVHIQIHQIESQ-EAMIEGF 641
               + L +E+   + QIES  +  I+GF
Sbjct: 638 EYANATLNNELAAYLKQIESSPDTQIDGF 666


>gi|315918335|ref|ZP_07914575.1| DNA primase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692210|gb|EFS29045.1| DNA primase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 610

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 146/635 (22%), Positives = 271/635 (42%), Gaps = 34/635 (5%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M  + ++ I  L+  + I +++G++V+  +   N     Y   CPFH +  PSF  N  K
Sbjct: 1   MKMFRQEDIDRLMEQLNIVDVVGEFVELKKSGAN-----YKGLCPFHADNNPSFSVNPQK 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
               CF C   G+ ++F S     SF E+V+ LA    +PL  +  + +++ +      +
Sbjct: 56  NICKCFVCGAGGNPITFYSKYKKISFQEAVRELAKKYHIPLQEI-KQNKEENEKFERYYK 114

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           ++E A  +F H +     +    YL +R +    I    LGYA  S  SL  HL + G+ 
Sbjct: 115 IMEEAHQYFSHLIFENIGREALEYLVKRKVGPKLIRENNLGYASPSWDSLFNHLIELGYQ 174

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238
            E++   GL +    +   YD FRNR+IFPI S +G+VIAFGGRTL + +   KY+NS +
Sbjct: 175 SEELELLGL-VKRRENGQYYDVFRNRVIFPIYSIQGRVIAFGGRTLEQDKEIPKYINSSD 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F KGK LY              +       ++ +++EGYMDVLS    G    ++ L
Sbjct: 234 TPIFKKGKGLYGL-----------ERVSGIKQKNYAMIMEGYMDVLSTVSYGFDTSIAPL 282

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT+ Q++LL + +  ++LCFD D+ G  AA +AI L       G  +  + L   +D
Sbjct: 283 GTALTKEQVQLLKRYTENVILCFDSDNAGQMAAERAIFL---LKEEGFNIRVLQLKGAKD 339

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD F++ +GK AF + +   L   D L+    +  + +    + +     +   + +  +
Sbjct: 340 PDEFLKKFGKEAFLQEVQACLEAFDFLYTYYKKEYALDDIMSKQKFVERFQEFFHSLSKE 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +  Y     D L    Q              +N  H   +   + +      +     
Sbjct: 400 LEQELYLHKFSDLLGMDVQVLRPLL---FPKGTRNFSHVRARKQEEEIFVQDFQELYSVL 456

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +    + ++L    +  +   + Y  L D+ +  +  +K++  L      +       I 
Sbjct: 457 EKLSVQISILDLQQHKESEEAKYYHFLKDMPFQFDFTRKIFQDLEKYEQGKDTQSRNTIL 516

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL------S 592
           + + E    +     +++     L        I + +    +  A       +       
Sbjct: 517 ESIREIFTKDNYTIEEKEHLFELLSECLERDKIEEQKHIVCRDWAREMFKNTVVTDPFKQ 576

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            + +++E++I  +  K +  +   +     ++  +
Sbjct: 577 LRLKQLEQKI--LKNKKDMGQFLEMYQRYLKLREE 609


>gi|15805628|ref|NP_294324.1| DNA primase [Deinococcus radiodurans R1]
 gi|9910834|sp|Q9RWR5|PRIM_DEIRA RecName: Full=DNA primase
 gi|6458299|gb|AAF10180.1|AE001918_5 DNA primase [Deinococcus radiodurans R1]
          Length = 571

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 164/619 (26%), Positives = 261/619 (42%), Gaps = 54/619 (8%)

Query: 21  IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80
           +G+YV           G     CPFH EKTPSF  +  KG+Y+CF C   GD   F+  +
Sbjct: 2   VGEYVRLTPAGK----GRLKGLCPFHKEKTPSFQVDTEKGYYHCFGCKASGDVFGFVQQM 57

Query: 81  LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRL 140
              SF +++++LA  AG+ +       +  EK+  DL  +   A D+F   L        
Sbjct: 58  EHLSFGDALRKLADRAGIQI-----DAKYGEKVSRDLYEVNAFALDYFRSHLPGP----A 108

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
             YL  RG+    I  F+LGYAPD    L +  R KG SE++++EAGLL +   +   YD
Sbjct: 109 LDYLRGRGLSDETIAAFELGYAPDGWDGLLKLARTKGVSEKQLLEAGLLTENPENGRVYD 168

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260
           RFR R++FPIR   G+++ FGGR L      KYLN+PET  F KG+ LY    A + L  
Sbjct: 169 RFRGRVMFPIRDHLGRLVGFGGRVL-DDSKPKYLNTPETAAFKKGELLYGLDKARSGL-- 225

Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-WKLSPRIVL 319
                      + +++VEGYMDV+S+ Q G    V+SLGTALT    +LL    +  IVL
Sbjct: 226 --------GGGAELVVVEGYMDVISMHQHGFTGAVASLGTALTAEHAQLLERLGAQSIVL 277

Query: 320 CFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESL 379
            FD D  GL+A    +D V+       RV    +  G+DP   +         + +   L
Sbjct: 278 MFDQDGAGLKATLAGLDQVIGAK---FRVRATSVPSGKDPADALLAGDDAGIREALAGGL 334

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
             V    +  TE    +T + +  + + L   + ++ D         AI   ++    + 
Sbjct: 335 DEVKYRVQAATEKYGVDTNEGKRRVLMELLPRMQNL-DP------LDAIAQDMRGAACEL 387

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
           +      G   +        K   + L  + L     S      E ALL  L+  P++L 
Sbjct: 388 L------GIRPEALLDWITSKAKRRTLTDTHLAGMSQSSGEEEHELALLRQLLVDPSLLA 441

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +    L    + N  ++K+          Q    P++I      +   +LL +L  + RD
Sbjct: 442 KLDGSLP---WRNEAVRKV------MLAAQGARSPDDILDIFRGQPEEQLLIRLMFEGRD 492

Query: 560 AGLWSATTEANIVDVRQGY----QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           +G  S  +          Y       + +      L  + + ++KQ+       +    +
Sbjct: 493 SGSLSRASSQEYEQKVTTYAAHAVDDIQVTLNIDALKTEVDLLKKQLLSTPPAEQLALLS 552

Query: 616 ILISILHEVHIQIHQIESQ 634
            +  +   +  +       
Sbjct: 553 QIQELQRAIEAEKRARRGS 571


>gi|161546626|ref|NP_860730.2| DNA primase [Helicobacter hepaticus ATCC 51449]
          Length = 552

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 142/598 (23%), Positives = 262/598 (43%), Gaps = 58/598 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  ++ L  +I I ++IG Y++  +  +N     Y ACCPFH+EKTPSF  + +KGFY
Sbjct: 2   ISKHSLETLKQNIDIVDVIGSYIELRKSGSN-----YMACCPFHNEKTPSFIISPTKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +C+ C V GD + FL      SF+ESV+++AA+    L   +   +K + I      +++
Sbjct: 57  HCYGCGVGGDAIKFLMEYEKLSFVESVEKIAAMTNFALEYENTYEKKPDSI------VLD 110

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               F+   L +   K    YL  R + + +IE F+LGY   S  ++     +    +E 
Sbjct: 111 EIMRFYQKQLLSH--KPSLEYLASRQVANASIEKFRLGYCGASFETINFLNAKILNKQEA 168

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +      I G ++   Y RF +R+IFPI S  G+V+ FGGRT+    + KY+NSP++ +F
Sbjct: 169 LEF---GIIGKDNGREYARFNDRIIFPIHSPNGKVVGFGGRTM-SNANAKYINSPQSKIF 224

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           +K K LY ++ A + + K  +          II+ EGY+DV+ L QAG    V++LGTAL
Sbjct: 225 NKSKLLYGYYLAKDRIYKQKK----------IIVCEGYLDVIMLHQAGFDYAVATLGTAL 274

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T+  L LL K  P+++L +DGD  G+ AA+KA  ++    I G     V+   G DP   
Sbjct: 275 TKEHLPLLRKGEPKVILSYDGDKAGINAAFKAAKILSEASIEG---GVVIFENGADPADM 331

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +         +L    +  ++ +      +     P ++ +        ++ +    L+ 
Sbjct: 332 VAHKQINELSELFSHPISFIEFVLTHIARSYELENPLQKEKALAESTQFLHTL-SPLLQE 390

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   +   L    +   T+H+                                      
Sbjct: 391 EYKPLLARLLSLPTRLIHTQHNKAHSTQTIFNASMQ----------------------DF 428

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKL-WSFLFSDFVEQKYFLPEEIHQRL 541
            E+ L+ + +  P ++    + +    +   + +K+ +  + +   +    L   ++  +
Sbjct: 429 AESVLIKSFLEKPNLIDFAIEYIDISLF---KYKKIEFGLVTNQCYDDPRLLAISLNDNI 485

Query: 542 CE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                   L + L   V  A         +  ++    +  +    + ++L+ +K E+
Sbjct: 486 KPLPDLPSLKEHLRLFVTQAYSQLLGQIPHSNEMSLRRKSEIIKELKTKILTLKKGEL 543


>gi|310659060|ref|YP_003936781.1| DNA primase [Clostridium sticklandii DSM 519]
 gi|308825838|emb|CBH21876.1| DNA primase [Clostridium sticklandii]
          Length = 580

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 144/525 (27%), Positives = 241/525 (45%), Gaps = 29/525 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              +FI+D+   I I ++I  YV+            Y   CPFH+EK+PSF  N+ K  +
Sbjct: 2   IDDNFIEDVKARINILDIISSYVELK-----GNAESYKGLCPFHNEKSPSFMVNEKKQIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIR 119
            CF C   GD ++F+       F+++++ LA  A +P P       +  +  +++  L++
Sbjct: 57  KCFGCGEGGDAIAFIMKKENLDFMDALKVLAEKANIPWPEDKTITLQQRQTAELREKLLQ 116

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +  +A  ++   L N  DK    Y+  R +    I+ F LGYAP S  +LREHL  KG+ 
Sbjct: 117 IHLIAARYYFQMLWNNVDKS-LDYIKRRNLSDKTIKKFGLGYAPRS-TALREHLLSKGYI 174

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           E+++IE+GL +         DRF  R++FPI   RG+VIAFGGR +      KYLNS +T
Sbjct: 175 EKELIESGLFVSRGTQIK--DRFFGRIMFPIFDIRGRVIAFGGRVI-DSSLPKYLNSSDT 231

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           ++FHK  +LY    A N            N +  I LVEGYMDV+++ Q G  + V+SLG
Sbjct: 232 LIFHKKNHLYGLNIAKN------------NLTRDIFLVEGYMDVIAMHQYGFSSAVASLG 279

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LTE Q + + K    + L +D D+ G++A  + ID+     I       +  S   DP
Sbjct: 280 TSLTEQQAQSIKKYCNNVYLAYDNDEAGIKATLRGIDI---LKINELSAFVLDFSPWNDP 336

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D ++       FEK+I  S   +    ++  +  S +   ++          +       
Sbjct: 337 DEYLSNNSTEEFEKIISNSKSSLQFQIEQIQKKYSLDMEKDKITFIKEASFVLKKHSSPV 396

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                   + D      +   +E  G   +  K    +  K  ++   ++ +   K  + 
Sbjct: 397 EIETEIIRLSDITGLSIKSIGSEVYGKY-FSPKQFEVQGMKKSNKVTEKNDIKIHKDEEA 455

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
             + E + L  L+NH +        L+   + N E ++++  L  
Sbjct: 456 WLITEFSFLNYLVNHISEYDVIKNMLSKEDFSNEESREIFDMLSD 500


>gi|317065079|ref|ZP_07929564.1| DNA primase [Fusobacterium ulcerans ATCC 49185]
 gi|313690755|gb|EFS27590.1| DNA primase [Fusobacterium ulcerans ATCC 49185]
          Length = 591

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 146/632 (23%), Positives = 262/632 (41%), Gaps = 52/632 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I  L+  + I  ++G++V+  +  +      Y   CPFH + +PSF  + SK 
Sbjct: 1   MRYKSEDIDMLIESLRIEEVVGEFVELKKSGS-----SYKGLCPFHQDTSPSFMVSPSKN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              CF C   G+ + F S     SFIE+V+ L+   G+P+       +K  +      ++
Sbjct: 56  ICKCFVCGAGGNPIKFYSEYKKISFIEAVEELSKKYGIPI-KGTRNSKKNNENYDKYYKI 114

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A +FF   + +   +    YL  R ++   I+  +LG+AP+    L +HL  KG+  
Sbjct: 115 MEDAHNFFKEYIFSNGGREAMEYLAARKLNPKIIKDNELGFAPNKWNELNDHLISKGYEL 174

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
           + +I  GL+ +  +    YD FRNR+IFPI S  G++IAFGGRTL   +   KY+NSP+T
Sbjct: 175 KDLIALGLVKE--SENGQYDVFRNRIIFPIYSPTGKIIAFGGRTLENNKEVPKYINSPDT 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGKNLY              +       ++ +L+EGYMDVLS    G    ++ LG
Sbjct: 233 PIFKKGKNLYGL-----------ERGSMIKKKNYAMLMEGYMDVLSGYLYGFDVALAPLG 281

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q +LL + +  I+L FD D  G  A  ++  ++      G  +  ++L   +DP
Sbjct: 282 TALTEEQGKLLKRYTSNIILSFDSDAAGQSATERSGMILKTL---GFNIRVLVLEGAKDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YGK +F K +  S+ + D L+K  ++    +    +       K     +    
Sbjct: 339 DEYLKLYGKESFLKCVKNSVEIFDFLFKYYSKEYDLSNMMSKQNFINRFKEFFQSVDTDL 398

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y   +  +L               R   +           +    S  +     + 
Sbjct: 399 EKSLYLDKLSKQLNIEKDILKETLIDKNRKKSR-----------KIEEVSENISISREEA 447

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            S  E   L  ++      +    +           +K++ +L     E       + + 
Sbjct: 448 ASKLEELTLGLILAKNEYFEYFKNKNIKGSLT----RKVFQYLKERDEESNIVRELKDNV 503

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ----- 594
            L +    E     +  +  A    ++ E     + + +     +  + +  +R+     
Sbjct: 504 ELTKAETDE----WEIVICMAINDFSSEERTNKLLEEIFISWFRIELKEKQRNRENISKT 559

Query: 595 --KEEIEKQIAQVTAKGEAEKTAILISILHEV 624
              + IE ++          K   +     E+
Sbjct: 560 IGLKSIELKLNAADG---FSKILDIYKEYEEI 588


>gi|237751997|ref|ZP_04582477.1| DNA primase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376564|gb|EEO26655.1| DNA primase [Helicobacter winghamensis ATCC BAA-430]
          Length = 559

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 140/597 (23%), Positives = 264/597 (44%), Gaps = 57/597 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  L   + I  +I  Y++  +  +      Y ACCPFH EKTPSF  N +KGFY
Sbjct: 2   IQQQSIDALKNQLDILEVISHYIEVKKMGS-----SYKACCPFHQEKTPSFVVNANKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      ++ E++++LA +  V L         +        ++++
Sbjct: 57  HCFGCGASGDSIKFVMEYEKLNYAEAIEKLAQLYNVRLEYSQKSQNNEN------YKIMD 110

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               ++   L    +  +  Y+ +RGI +     F+LG+AP +   +    R     ++ 
Sbjct: 111 FMNGYYQTML----NAEVESYIKQRGITTEIKARFELGFAPQNHEIMAHLQRNMVNLQDA 166

Query: 183 IIEAGLLID-GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           +    L +D  +     Y R   RLIFPIRS++ ++I FGGRTL      KY+NSP+T L
Sbjct: 167 LNFGILGVDLENGVKRYYARLTQRLIFPIRSAQNKIIGFGGRTL-VNHPAKYINSPQTKL 225

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+K + LY +  A   + +             +I+ EGY+DV+ L QAG  N V++LGTA
Sbjct: 226 FNKSQVLYGYPQAKESIYRL----------ESVIITEGYLDVIMLHQAGFTNAVATLGTA 275

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT+  L LL K +P+++L FDGD+ G++AA+KA  L+      G     VL   G DP  
Sbjct: 276 LTKEHLPLLAKGNPKVILAFDGDNAGMQAAFKAASLLSIAKKQG---GVVLFEGGLDPAD 332

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            ++       + L    +PL+D + +   +        ++ +    +   ++ +    ++
Sbjct: 333 MVKNSEIEELKSLFDSPIPLIDYVLESIIKRYDLQNAAQKDDCLKEILEYLHQL-SPVIQ 391

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y   +  RL                      + +  K  +Q + + SL +   +    
Sbjct: 392 EEYKLWLSQRLAL---------------PAHLIQTKKPKAQNQSITKESL-RFSEASFYD 435

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           L E  ++ +++ +  +L      L    +     ++ ++ L  + +E    +   + +++
Sbjct: 436 LPEKIIIKSVLENMELLGFVLDYLDPKMFRTQ--KEAYNKLLKNELEDPLLIGILLDEKI 493

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             +    L +Q+        +       +       Y++ L+L ++  LL + ++ +
Sbjct: 494 KPQDKEHLREQI--------IMVLYQHYDQERKALSYKKGLSLREKAFLLRKYQKYL 542


>gi|57234645|ref|YP_181296.1| DNA primase [Dehalococcoides ethenogenes 195]
 gi|57225093|gb|AAW40150.1| DNA primase [Dehalococcoides ethenogenes 195]
          Length = 590

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 137/624 (21%), Positives = 266/624 (42%), Gaps = 56/624 (8%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS- 66
           ++++   + I + IGQY    +             CPFH EK  SF        ++CF  
Sbjct: 5   VEEIKQKLDIVSFIGQYTKLTKAGR-----TMRGICPFHSEKHGSFFVYPEAQNWHCFGA 59

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126
           C+  GD  +F+    G  F  +++ LA  AGV LP       +    +  L  +   A  
Sbjct: 60  CNTGGDIFAFVMKKEGLDFKGALELLAEKAGVSLP--SQINPQIRDQRERLYEINLAAAQ 117

Query: 127 FFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
           ++H+  L + + +    YL  RG++  ++  F+LGYA      L ++L+++ +++E +++
Sbjct: 118 YYHNLLLNSPQAESARSYLKSRGLNEQSLADFQLGYALPEWQGLYDYLKERSYTDEDLLK 177

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
           AG+ I   +    +DRFRN +I+PI + +GQ+  FG R +      KY NSP+T LF+K 
Sbjct: 178 AGV-IVRSDEGRIHDRFRNNIIYPIANYKGQIAGFGARVM-DNSQPKYRNSPQTDLFNKS 235

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
             LY    A   ++            +  I+VEGYMD +   Q G  N V+ +GTALT+ 
Sbjct: 236 SLLYGLHLASASIR----------EKNQAIIVEGYMDAIMSHQGGFTNTVACMGTALTDR 285

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
           Q+ L+ + +  ++L  D D  G  A  +AID         + +   +   G+DPD  IR 
Sbjct: 286 QIALVKRQTKHLILGLDADSAGEEATLRAID---YENQIESEIRVAVPEGGKDPDEIIR- 341

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
           +    +++++  + PL+D +++   +    ++   +A L   L   I+ ++D   + +Y 
Sbjct: 342 HAPQTWQEILDNARPLLDYIFEHSQKGLDLSSAAGKAGLTDRLLPIISKMEDGVRQSHYL 401

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             + + +           +   R  ++  + +++   ++ L + +  K   + K    E 
Sbjct: 402 GKLAEMVS----------TSQNRILERMKKLKNETRITKVLEKEAPSKTVSAAKNPALEE 451

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L  L   P +      +L     +  + ++L +                  Q   +  
Sbjct: 452 YALSLLFKSPEL-SRFAGKLHPEYLEIPQYRELLAVY---------------SQSAEKDN 495

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
               L +  R+  D  +       NI D          L  R R L     ++ + + ++
Sbjct: 496 LRAALDENLREYYDNLMNKNPANDNIEDKFYDLC----LRLRERYLRNLAVKLNQALNEI 551

Query: 606 TAKGEAEKTAILISILHEVHIQIH 629
            ++ E  +   L     +V+ ++ 
Sbjct: 552 -SQPETAEYQTLNDQCVKVNEELR 574


>gi|283780467|ref|YP_003371222.1| DNA primase [Pirellula staleyi DSM 6068]
 gi|283438920|gb|ADB17362.1| DNA primase [Pirellula staleyi DSM 6068]
          Length = 613

 Score =  294 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 143/628 (22%), Positives = 241/628 (38%), Gaps = 37/628 (5%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           + +   + I +++G Y++  R         +   CP+H++  PS   N  +  + C+ C 
Sbjct: 8   EQVRQAVSIVDVVGSYMELRRSGR-----LFVGLCPWHNDSKPSLQVNPDRQTWKCWVCD 62

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTDLIRLIEVAT 125
           + GD  SF+    GC F E++  LA  AGV L       P        +  L+   E A 
Sbjct: 63  IGGDIFSFIMQKEGCDFREALTMLADRAGVKLVEQQHSKPVEPGSPNDKNTLLACTEWAR 122

Query: 126 DFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
             +H   L++        Y+ ERGI   +I  F +GYAPD    L +  R   FS   + 
Sbjct: 123 QQYHECFLRSEIAAAARDYVRERGITDESIRKFSIGYAPDQWSWLIDRARTARFSPAVLE 182

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLNSPETIL 241
             GL        T YDRF+ RLIFPIR   G+ IAFGGR L    + ++ KY+NSPET L
Sbjct: 183 ATGLAGKS-ERGTHYDRFKGRLIFPIRDPLGRPIAFGGRILPGASQADAAKYINSPETRL 241

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K +NLY    A   + KS            + +VEGY DV+   Q G++NVV+ LGTA
Sbjct: 242 FSKSENLYALDIAKEVVSKS----------RSLTVVEGYTDVIMCHQYGLKNVVAVLGTA 291

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           L    ++L+ + +  + L  DGD+ G R   + ++L    +     +  + L    DP  
Sbjct: 292 LNSRHIQLIRRFADSVTLLLDGDEAGQRRTNEILEL---FVSSQLDLRILTLPDEYDPAE 348

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            ++  G     +L+  ++  ++   +   +          A     L+  +  +      
Sbjct: 349 ILQEKGGDEVRRLLATAVDALEHKIRLAIQGIDPVRDTHLAN--KALEGILTLLAKGVDP 406

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
              +     RL+Q+  +                +    K       +             
Sbjct: 407 ANAADTTALRLKQILARLARVFRLDDLDIATRFKQLQPKTAKLETTKPITAAEYQLASIP 466

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            RE+ LL  +  H  ++     EL+D+   +   ++++                 I   +
Sbjct: 467 PRESELLEIMALHEELVPIALGELSDVDITSQAAREVFVAYREMEESGGSLEFGAILASI 526

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                  LL  L        + S      + D     +  L  + R     R+    E+ 
Sbjct: 527 ENPALKSLLAGL------VEVASQKEPKALHDAPTRMRAVLNSF-RHHQKQRELLATEEA 579

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIH 629
           +A      + E    ++  L +   Q  
Sbjct: 580 LASKQMSEDEEV--DVLKQLIDAKRQQQ 605


>gi|325068973|ref|ZP_08127646.1| DNA primase [Actinomyces oris K20]
          Length = 432

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 119/447 (26%), Positives = 198/447 (44%), Gaps = 42/447 (9%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
                + +++G++V           G     CPFHDE+TPSFH     G+++CF C   G
Sbjct: 2   RERARLEDVVGEHVTLKSAG----VGSLKGLCPFHDERTPSFHVRPQLGYWHCFGCGEGG 57

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLIRLIEVATDFF 128
           D ++F+  +    F E+V+ LA   GV L   +    ++      +  L+    +A  +F
Sbjct: 58  DVITFIEKIHHLGFAEAVEYLADRTGVQLRYEEGGAVRRGVEPGTRQRLMDANRLAEAWF 117

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
              L     +    +L  RG D HA   F +GYAP    +L  +LR  G++E +++++GL
Sbjct: 118 REQLATPEAQPGRDFLTARGFDRHAAAHFGVGYAPAGWDNLARYLRSSGYTEAELVDSGL 177

Query: 189 LID-GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSPETILFHKGK 246
               G +    YDRFR RLI+PIR   G  + FG R L  + +  KYLN+PET +FHK +
Sbjct: 178 CSRGGQDGRRVYDRFRGRLIWPIRDVTGATVGFGARKLSEEDQGPKYLNTPETPVFHKSQ 237

Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306
            LY    A   + +S R          I++VEGY DV++   +GV   V++ GTA     
Sbjct: 238 VLYGLDLAKREVARSHR----------IVVVEGYTDVMAAHLSGVTTAVATCGTAFGADH 287

Query: 307 LRLLWK--------------------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
           +R++ +                        ++  FDGD  G +AA +A            
Sbjct: 288 VRVVRRLLGDVDDPAAGVVTGQGREARGGEVIFTFDGDAAGQKAALRAYAEDQRFAT--- 344

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
           +    +   G DP       G +   +L+   +PL + + +    +   +T + R     
Sbjct: 345 QTFVAVDPGGLDPCDLRMKEGDSGIPRLLSRRVPLFEFVIRTSLSHLDLDTSEGRVRGLR 404

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQ 433
                +  I+D+ L+  Y++ +   L 
Sbjct: 405 SAAPVVAGIRDRALKREYTRRLAGWLG 431


>gi|320333568|ref|YP_004170279.1| DNA primase [Deinococcus maricopensis DSM 21211]
 gi|319754857|gb|ADV66614.1| DNA primase [Deinococcus maricopensis DSM 21211]
          Length = 586

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 162/630 (25%), Positives = 267/630 (42%), Gaps = 57/630 (9%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           +D+   + I+ LIG+YV           G     CPFH EK+PSF  +  +G++YCF C 
Sbjct: 5   EDVRARLNIAELIGEYVQLTPAGR----GRLKGLCPFHKEKSPSFQVDVEQGYFYCFGCK 60

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
             GD  SF+      SF +++++LA   GV +          EK   DL  +   A ++F
Sbjct: 61  AGGDAFSFVQRAENLSFGDALRKLAERVGVAVETRYG-----EKQSRDLYDVNAFALEYF 115

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
              L          YL  RG+    IE F+LG+AP+    L +  R +G  E +++EAGL
Sbjct: 116 REHL----GGEGLAYLRRRGLTDETIERFELGFAPEGWDGLLKRARTRGVPERQLLEAGL 171

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
           LI+   +   YDRFRNR++FPIR   G+++ FGGR L   E  KYLN+PET +F KG+ L
Sbjct: 172 LIEN-ETGRVYDRFRNRVMFPIRDHLGRLVGFGGRVL-GDEKPKYLNTPETDVFKKGELL 229

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           Y    A   ++              +++VEGYMDV+++ QAG    V++LGTALT     
Sbjct: 230 YGLDKARGQVR----------DGGELVVVEGYMDVIAMQQAGFTTAVATLGTALTAEHAT 279

Query: 309 LL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
           LL  +   R+ L FD D+ G +A    +D V+        V  + +  G+DP   I    
Sbjct: 280 LLERQGVRRLALLFDRDEAGQKATLAGLDQVVGAR---LNVRALSVPNGKDPADAILAGE 336

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
             A    +   L  V    +   E     T D + ++ + L   + ++          + 
Sbjct: 337 MDALRAALAGGLDEVAYRVQSAVEAYGVATSDGKRKVLMSLLPRMQNLDPLDEGASRMRD 396

Query: 428 IR-DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
           I  +RL    +  +                   K   + L ++ L      +    RE A
Sbjct: 397 IACERLGIKPEALLD--------------WISSKAKRKTLSKTQLAGMSTQRHDEDRELA 442

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
           LL  L+  P +L +    +    + N  ++K+          +     EE+ +    +  
Sbjct: 443 LLKQLLIDPTLLAKLDGHVP---FHNETVRKV------VLAARGTRRSEEVLEVFRGQPE 493

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ----QALALYKRFRLLSRQKEEIEKQI 602
            +LL +L  + RDAG  S +      + R  Y       + +      L  + + ++KQ+
Sbjct: 494 EQLLIRLMFEARDAGAHSRSAAEQYEEKRTAYAAQATDEIQIALSIDQLRAEVDALKKQV 553

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
                  +      +  +   +  +    +
Sbjct: 554 LGAPPAEQLGLLRQISELQRAIEAEKRARK 583


>gi|160915038|ref|ZP_02077251.1| hypothetical protein EUBDOL_01046 [Eubacterium dolichum DSM 3991]
 gi|158432837|gb|EDP11126.1| hypothetical protein EUBDOL_01046 [Eubacterium dolichum DSM 3991]
          Length = 586

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 143/620 (23%), Positives = 254/620 (40%), Gaps = 44/620 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I ++     I ++IG+Y+   R+  N     Y   CPFHD+  PS   +  K  
Sbjct: 3   RLREEEINEIRAKADIVDVIGRYLPLTRKGKN-----YVCTCPFHDDHNPSMSVSSDKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIRL 120
           Y CF C+  G+  +F+S     SFIE+V ++A   G+ +       ++    Q   L R 
Sbjct: 58  YKCFVCNAGGNVFTFVSNYEKISFIEAVYKVADYTGISIEQPLQLPQRNVDPQLAPLHRA 117

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A +F H+ L   +   +  YL  R ID   I+ F LGY P +  SL + L  K  S+
Sbjct: 118 CGEAIEFTHYQLDTPQASDVKKYLTSRLIDDSIIKKFSLGYNPPN-DSLYKFLHAKKHSD 176

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + +I+AGL           D F  R++ PI +  G+ + F  R   +    KY+N+ ET 
Sbjct: 177 DTLIKAGLCRLTAVGMK--DVFAGRIMIPIHNEFGEPVGFSARRFVENSDAKYINTSETD 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++ KG  ++N+  A +  +K+ +           ILVEG MDVL+  + G+ N +++LGT
Sbjct: 235 IYVKGNLIFNYHRAKSEARKAKKA----------ILVEGAMDVLAFEKVGMSNALATLGT 284

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T+ QLRLL +L   I++ +DGD  G  A Y    L             V    G DPD
Sbjct: 285 ACTKEQLRLLKQLHVPIIVGYDGDRAGQSATYAFGKLAREAQ---IPFEIVDNKYGLDPD 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I  +GK    ++  +++  +D L+       +     ++ E  + +   I  +KD   
Sbjct: 342 EIIEEFGKEELRQISEKTISWIDFLFTFLMTKYNLENYTQKKEFAMEMAEEIYLLKDDFE 401

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y   +R+                          +  K  ++ + +S L   K  +  
Sbjct: 402 KESYYIRLRELTDFDM--------------HGEEAKKQPKAKTEYVKRSYLAFPKSGRNH 447

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  +L  ++N  A      +EL  +   ++   +L  ++   +   +     ++  +
Sbjct: 448 --AEFEILSQMLNGVAASNHYKEELGFL--QDDTCNRLALYIIDYYRTHRKLEVADLFDK 503

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + E    +LL  +          +      + +     ++ L L  R R+L+ Q  +I  
Sbjct: 504 IKEEAVKQLLLDVSSWELGKAEVNLKV---LNEAIHKVKECL-LDDRIRILNEQIAKIHD 559

Query: 601 QIAQVTAKGEAEKTAILISI 620
            + +     E          
Sbjct: 560 PMEKARLAVEKNGLIKEKEE 579


>gi|297180572|gb|ADI16784.1| DNA primase (bacterial type) [uncultured gamma proteobacterium
           HF0010_11B23]
          Length = 581

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 143/619 (23%), Positives = 273/619 (44%), Gaps = 47/619 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + P+DFI  L+    I ++I  YV   ++  N     Y  CCPFH+EKTPSF  +  K  
Sbjct: 4   SIPKDFIDRLVEDSDIVSVINHYVSLSKKGNN-----YTCCCPFHEEKTPSFVVSPQKAI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           ++CF C   G+ L+F+    G SF+E+V++LA +  V +P  +          + +  + 
Sbjct: 59  FHCFGCGAGGNVLTFIKDHEGLSFVEAVEKLAELNNVTVPRENTFG---NNDFSKIHEIN 115

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E   +++  +LK+ ++K +  YL ERGI     + FK+G+A  ++  L + L+ K   +E
Sbjct: 116 EFVANYYFEALKDQKNKSIVEYLKERGISGQTAKNFKIGFADFNQNELLKILQSKFSEKE 175

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +     L    N    Y   RNR+ FPI +S G+ I FGGR  +     KYLNS ++  
Sbjct: 176 ILESGNFLK---NDKGFYPFLRNRVTFPIFNSSGKTIGFGGRV-TDDSLPKYLNSKDSKF 231

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+K + LY F  A    +           +   I+ EGYMDV+ L + G+ N V+SLGTA
Sbjct: 232 FNKTRELYGFNNAKKDHK-----------TDDFIVTEGYMDVVMLSEYGINNAVASLGTA 280

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            ++  +  ++KL  +I  CFD D+ GL+AA++A  + L ++I    V F+ L  G DPDS
Sbjct: 281 FSQNHMSSMFKLRRKITFCFDSDEAGLKAAWRAFQISLKNVIDDKTVRFLFLPEGYDPDS 340

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           F++  G+  F K +  ++ L    ++     +  ++P++  ++    K  +  +  + L+
Sbjct: 341 FVKEKGEQEFYKKLDRAMVLESFAFQYLKRGKKLDSPEDIRQIIFEFKKLLPLVTSEMLK 400

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                     L    +  + E     + + K      +       +    +         
Sbjct: 401 ETLMTKFSSELNINKEILMKEDRPKKKTYVKKVLKSKKAAFENEFLLLIFLLENHKNSI- 459

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                          + QE ++ +   +            + S          E   ++ 
Sbjct: 460 -------------NDLSQEFFKFIETTK---------RDEITSFQEVINQIKTENSTRKE 497

Query: 542 CERGFGELLKQLD-RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                  ++  L+  Q      +   ++A  ++  + + + L +    + LS++++E  +
Sbjct: 498 SPLFAKAMMIDLNLSQDEVISEFIRASDAIRLEFDELFAEYLIILANKKELSQERKENLQ 557

Query: 601 QIAQVTAKGEAEKTAILIS 619
           ++  +      ++  ++ +
Sbjct: 558 KLLNLRDNNSIQEEELIQN 576


>gi|255014263|ref|ZP_05286389.1| DNA primase [Bacteroides sp. 2_1_7]
          Length = 705

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 160/709 (22%), Positives = 283/709 (39%), Gaps = 104/709 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++ ++V   +R  N     Y   CPFH +K+PSF+ + SK   
Sbjct: 2   IDQPTIDRILDAANIVDVVSEFVTLRKRGIN-----YVGLCPFHSDKSPSFYVSPSKNIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CF+C   G  + F+      S+ ++++ LA    + +   +   ++K+    +  ++ +
Sbjct: 57  KCFACGEGGTAVHFIMKHEQLSYFDALRFLAKKYNIEIQERELTEKEKQIRSDRESMLIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A  +F   L    + +     Y  ERG+    I  F+LGY+ D R +L +   + G+
Sbjct: 117 NSWAGQYFSTLLHEHVEGKSVGMRYFAERGLREDIIRKFQLGYSLDQRDALYKTAIKAGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
            +E + + GL+I   ++    DRFR R+IFP+ +  G+V+AFGGR L K E   KY+NSP
Sbjct: 177 KKEFLEKTGLVI-AYDNGNVNDRFRGRVIFPVHTLSGKVVAFGGRVLKKDEKTAKYVNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK   LY  + A   + K  R            LVEGYMDV+ + Q GV+NVV+S
Sbjct: 236 ESEIYHKSNELYGIYFAKQAIMKQDR----------CFLVEGYMDVIGMHQVGVENVVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT+ Q+RL+ + +  I + +DGD  G++AA + ID+    L  G  V  VLL  GE
Sbjct: 286 SGTALTQGQIRLIHRFTNNITVLYDGDAAGIKAALRGIDM---LLEEGMNVKVVLLPAGE 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R +  + F + I ++         +     + + P +R+ L   +   +  I D
Sbjct: 343 DPDSFARSHSASEFAEFISQNETDFIRFKTKLLLAEAGSDPIKRSALISDIIRTVAIIPD 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHS----GYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
              R  Y +     ++   Q  + E +             +        S          
Sbjct: 403 NIARSVYIRECSTTMEIDEQVLLNEVNKIRLNKEENQAAKSVRNTPPVQSPVNTIPEYPD 462

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ----------------- 516
               +  +  EA  L      P   ++   E           +                 
Sbjct: 463 FPGYQPYTQEEANTLPPENIPPPPPEDYIPEKEAGPPPTPPYEVPTAPNIQVQPKRSPFE 522

Query: 517 ----KLWSFLFSDF---------VEQKYFLPEEIHQRLC-----------ERGFGELLKQ 552
                L  ++              E    +   +   +               F ++L +
Sbjct: 523 AYELALLRYIVRYGERVLYDYVDEETNEHVIMRVADYIRFDLERDDLTFYTPAFKQMLDE 582

Query: 553 LDRQVRDAGLWS-----ATTEANIVDVRQGYQ----QALALYKRFRLLSRQ--------- 594
                ++ G  +     A  + NI  +         Q    + +FR L ++         
Sbjct: 583 AAEHCQNEGFMASRYFLAHPDPNISRLAANLISDKYQLSKYHTKFRELEQEEDKLDYLVP 642

Query: 595 --------------KEEIEKQIAQVTAKGEAEKTAILI---SILHEVHI 626
                          ++I+ +I +   KG+ E+   L+   + L+E+  
Sbjct: 643 REIYSMKDAYILYKIKDIQAKIKEAQNKGDMEQIFDLMKQNAHLNEIKN 691


>gi|206896076|ref|YP_002247041.1| DNA primase (bacterial type) [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738693|gb|ACI17771.1| DNA primase (bacterial type) [Coprothermobacter proteolyticus DSM
           5265]
          Length = 569

 Score =  293 bits (749), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 146/622 (23%), Positives = 237/622 (38%), Gaps = 62/622 (9%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +  ++ I  ++ +YV   +   N     Y+  CPFH EKTPSF  N  KG + CF C   
Sbjct: 10  IRNNVDIVEVVSRYVSLKKVGRN-----YFGLCPFHSEKTPSFSVNPGKGIFKCFGCGEG 64

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
           GD + FLS +   S+ E+V+ LA   G+ +                +++++E A    + 
Sbjct: 65  GDVIKFLSKIENVSYREAVKMLATEVGISVDENS--------ETEKILQVLEEARRLMNG 116

Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190
            L          YL  RG+ +  I +F LGY P +R  L++ L +KGF+ + + +AGL  
Sbjct: 117 VLLTRSGALALSYLSNRGVKAETIGIFGLGYDP-TRDFLQKALIRKGFTADLVRKAGLTN 175

Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250
              N     D F  R++FPI +   + I FG R+L +   VKYLN+ ET  F K + LY 
Sbjct: 176 SIGN-----DFFGRRVVFPIENLSRRTIGFGARSLDETNPVKYLNTGETATFKKSRVLYG 230

Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310
              AL  + K          +  +ILVEGY D + L Q G  NVV+ LGT +T  Q RLL
Sbjct: 231 ISQALPSIDK----------TKSVILVEGYFDAVVLSQEGFSNVVAILGTTVTPEQSRLL 280

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
            +   R     D DD G+ AA K        L      +  LL  G DPD          
Sbjct: 281 SRKVRRATFLLDSDDAGIMAALKG---CFVLLSQNIEPSVALLPEGVDPDEMALRSRNKL 337

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
            E L         +            +P+    L  +L+                     
Sbjct: 338 SEILSAPINLFKFLELCAARYFGGMRSPEFLEALSQNLRGLTT---------------SP 382

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            L+    +   +     +  +     R  K         + V  K        E  +   
Sbjct: 383 LLEMALNELGEKMGLETKTLQSFLSSRGAKLERSEEDIYNAVSKKKPVDVESIEEQMAKL 442

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           LIN P +     ++          L+++   +             E +  L      +L+
Sbjct: 443 LINTPELSTILVED-EYFYPYTPGLREVLDAIKDW---DPERDTAEKYVELFPPYLRDLV 498

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           ++   +                   +  ++ L  + R + L     ++  Q+A+   +G 
Sbjct: 499 EESMSENF----------GTYQQKEKMLKELLGRW-RVKDLDNYINKLSSQLAESHDEGL 547

Query: 611 AEKTAILISILHEVHIQIHQIE 632
            E+   ++S   E+  Q+  +E
Sbjct: 548 LEQLQEVLSERDEISRQLQGLE 569


>gi|298376268|ref|ZP_06986224.1| DNA primase [Bacteroides sp. 3_1_19]
 gi|298267305|gb|EFI08962.1| DNA primase [Bacteroides sp. 3_1_19]
          Length = 705

 Score =  292 bits (748), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 157/712 (22%), Positives = 280/712 (39%), Gaps = 110/712 (15%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +L    I +++ ++V   +R  N     Y   CPFH +K+PSF+ + SK   
Sbjct: 2   IDQPTIDRILDAANIVDVVSEFVTLRKRGIN-----YVGLCPFHSDKSPSFYVSPSKNIC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120
            CF+C   G  + F+      S+ ++++ LA    + +   +   ++K+    +  ++ +
Sbjct: 57  KCFACGEGGTAVHFIMKHEQLSYFDALRFLAKKYNIEIQERELTEKEKQIRSDRESMLIV 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A  +F   L    + +     Y  ERG+    I  F+LGY+ D R +L +   + G+
Sbjct: 117 NSWAGQYFSTLLHEHVEGKSVGMRYFAERGLREDIIRKFQLGYSLDQRDALYKTAIKAGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
            +E + + GL+I   ++    DRFR R+IFP+ +  G+V+AFGGR L K E   KY+NSP
Sbjct: 177 KKEFLEKTGLVI-AYDNGNVNDRFRGRVIFPVHTLSGKVVAFGGRVLKKDEKTAKYVNSP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK   LY  + A   + K  R            LVEGYMDV+ + Q GV+NVV+S
Sbjct: 236 ESEIYHKSNELYGIYFAKQAIMKQDR----------CFLVEGYMDVIGMHQVGVENVVAS 285

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT+ Q+RL+ + +  I + +DGD  G++AA + ID+    L  G  V  VLL  GE
Sbjct: 286 SGTALTQGQIRLIHRFTNNITVLYDGDAAGIKAALRGIDM---LLEEGMNVKVVLLPAGE 342

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF R +  + F + I ++         +     + + P +R+ L   +   +  I D
Sbjct: 343 DPDSFARSHSASEFAEFISQNETDFIRFKTKLLLAEAGSDPIKRSALISDIIRTVAIIPD 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHS----GYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
              R  Y +     ++   Q  + E +             +        S          
Sbjct: 403 NIARSVYIRECSTTMEIDEQVLLNEVNKIRLNKEENQAAKSVRNTPPVQSPVNTIPEYPD 462

Query: 474 GKLSKKPSLREAALL--------------------------------------------- 488
               +  +  EA  L                                             
Sbjct: 463 FPGYQPYTQEEANTLLPENIPPPPPEDYIPEEEAGPPPTPPYEVPTAPNIQVQPKRSPFE 522

Query: 489 ---LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
              L L+ +   +    + +     D    + +   +               +    ++ 
Sbjct: 523 AYELALLRY---IVRYGERVLYDYVDEETNEHVIMRVADYIRFDLERDDLTFYTPAFKQM 579

Query: 546 FGELLKQLDRQ-VRDAGLWSATTEANIVDVRQGYQ----QALALYKRFRLLSRQ------ 594
             E  +    +    +  + A  + NI  +         Q    + +FR L ++      
Sbjct: 580 LDEAAEHCQNEGFMASRYFLAHPDPNISRLAANLISDKYQLSKYHTKFRELEQEEDKLDY 639

Query: 595 -----------------KEEIEKQIAQVTAKGEAEKTAILI---SILHEVHI 626
                             ++I+ +I +   KG+ E    L+   + L+E+  
Sbjct: 640 LVPREIYSMKDAYILYKIKDIQAKIKEAQNKGDMELIFDLMKQNAHLNEIKN 691


>gi|219681438|ref|YP_002467823.1| DNA primase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|257471113|ref|ZP_05635112.1| DNA primase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|219624281|gb|ACL30436.1| DNA primase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
          Length = 577

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 154/600 (25%), Positives = 269/600 (44%), Gaps = 50/600 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI +LL    I  LI   ++  +   N     Y   CPFH +KTPSF  ++ K F
Sbjct: 4   KIPKYFITELLSRTNIIELINTRLELKKYGKN-----YQTNCPFHHDKTPSFTVSNEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C+  G+ + FL      SFIES++ LA I GV +P  +         +  L  L+
Sbjct: 59  YYCFGCNAHGNAIDFLIQYEHLSFIESIEELALIHGVKIPFENTVQNSIYVKKQKLYLLM 118

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E     +  ++          YL  RGI+ + I+ F +G++        + +      E+
Sbjct: 119 EKICKLYKKNINVTHLANK--YLARRGINQNMIDFFLIGFSSLKWNEFYKKINISKEFEQ 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           +++   + I  D +   YDRF+ R+IFPI+ + G++I FGGR+L    S KYLNSPET +
Sbjct: 177 ELLINNI-IATDKNGYIYDRFQGRIIFPIQDNHGRIIGFGGRSL-NDMSPKYLNSPETDI 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+K K +Y  +  +    K +          ++++VEGY+DV++L Q  +   VS LGT+
Sbjct: 235 FYKRKQIYGLYQVIKKCSKPV----------YLLVVEGYIDVITLTQYNIDYAVSILGTS 284

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T   ++LL+K +  I+ C+DGDD G  AA+K +   L ++     + F+LL   EDPD+
Sbjct: 285 TTTEHIQLLFKNTDIIICCYDGDDAGKNAAWKTLKKALPYISDKKTLKFILLPNKEDPDT 344

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            IR  G+  F+K I  ++ +    +K   +N + ++ D++  L +H    IN I    +R
Sbjct: 345 IIRKEGREKFQKRIDNAITMSKFFFKNILKNINLSSDDDKFHLSVHALPLINTISSDTIR 404

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
            Y  Q +   +  L      +             +   K                     
Sbjct: 405 IYLRQILARMIGILDDNQFEKFLYEKETKNTQKTYFQIKRTPM----------------- 447

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQ----KLWSFLFSDFVEQKYFLPEEI 537
                L+  L+ +P++ +     LA +      LQ     ++  +     +       ++
Sbjct: 448 ---RTLIGLLVQNPSLAK-----LAPVTMKFKNLQIKGLSIFLEILQTCRDNPNIHTGQL 499

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +         +LK L R   D  +    T+   +D+       +   +R  L+++++++
Sbjct: 500 LELYRNTTIINVLKILARW--DHMIIQKETQNMFLDLLMNIHDKILEKRREYLIAKERKK 557


>gi|15616681|ref|NP_239893.1| DNA primase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11133953|sp|P57164|PRIM_BUCAI RecName: Full=DNA primase
 gi|25298046|pir||C84936 DNA primase [imported] - Buchnera sp. (strain APS)
 gi|10038744|dbj|BAB12779.1| DNA primase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
          Length = 577

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 151/598 (25%), Positives = 271/598 (45%), Gaps = 46/598 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI +LL    I  LI   ++  +   N     Y   CPFH +KTPSF  ++ K F
Sbjct: 4   KIPKYFITELLSRTNIIELINTRLELKKYGKN-----YQTNCPFHHDKTPSFTVSNEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C+  G+ + FL      SFIES++ LA I GV +P  +         +  L  L+
Sbjct: 59  YYCFGCNAHGNAIDFLIQYEHLSFIESIEELALIHGVKIPFENTVQNSIYVKKQKLYLLM 118

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E     +  ++          YL  RGI+ + I+ F +G++        + +      E+
Sbjct: 119 EKICKLYKKNINVTHLANK--YLARRGINQNMIDFFLIGFSSLKWNEFYKKINISKEFEQ 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           +++   + I  D +   YDRF+ R+IFPI+ + G++I FGGR+L    S KYLNSPET +
Sbjct: 177 ELLINNI-IATDKNGYIYDRFQGRIIFPIQDNHGRIIGFGGRSL-NDMSPKYLNSPETDI 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+K K +Y  +  +    K +          ++++VEGY+DV++L Q  +   VS LGT+
Sbjct: 235 FYKRKQIYGLYQVIKKCSKPV----------YLLVVEGYIDVITLTQYNIDYAVSILGTS 284

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T   ++LL+K +  I+ C+DGDD G  AA+K +   L ++     + F+LL   EDPD+
Sbjct: 285 TTTEHIQLLFKNTDIIICCYDGDDAGKNAAWKTLKKALPYISDKKTLKFILLPNQEDPDT 344

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            IR  G+  F+K I  ++ +    +K   +N + ++ D++  L +H    IN I    +R
Sbjct: 345 IIRKEGREKFQKRIDNAITMSKFFFKNILKNINLSSDDDKFHLSVHALPLINTISSDTIR 404

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
            Y  Q +   +  L      +             +   K                     
Sbjct: 405 IYLRQILARMIGILDDNQFEKFLYEKETKNTQKTYFQIKRTPM----------------- 447

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQ--KLWSFLFSDFVEQKYFLPEEIHQ 539
                L+  L+ +P++ +        +++ N +++   ++  +     +       ++ +
Sbjct: 448 ---RTLIGLLVQNPSLAKLVP---VTMKFKNLQIKGLSIFLEILQTCRDNPNIHTGQLLE 501

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                    +LK L R   D  +    T+   +D+       +   +R  L+++++++
Sbjct: 502 LYRNTTIINVLKILARW--DHMIIQKETQNMFLDLLMNIHDKILEKRREYLIAKERKK 557


>gi|219681994|ref|YP_002468378.1| DNA primase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219621727|gb|ACL29883.1| DNA primase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|311085800|gb|ADP65882.1| DNA primase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086375|gb|ADP66456.1| DNA primase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311086953|gb|ADP67033.1| DNA primase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 577

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 154/600 (25%), Positives = 269/600 (44%), Gaps = 50/600 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+ FI +LL    I  LI   ++  +   N     Y   CPFH +KTPSF  ++ K F
Sbjct: 4   KIPKYFITELLSRTNIIELINTRLELKKYGKN-----YQTNCPFHHDKTPSFTVSNEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           YYCF C+  G+ + FL      SFIES++ LA I GV +P  +         +  L  L+
Sbjct: 59  YYCFGCNAHGNAIDFLIQYEHLSFIESIEELALIHGVKIPFENTVQNSIYVKKQKLYLLM 118

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E     +  ++          YL  RGI+ + I+ F +G++        + +      E+
Sbjct: 119 EKICKLYKKNINVTHLANK--YLARRGINQNMIDFFLIGFSSLKWNEFYKKINISKEFEQ 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           +++   + I  D +   YDRF+ R+IFPI+ + G++I FGGR+L    S KYLNSPET +
Sbjct: 177 ELLINNI-IATDKNGYIYDRFQGRIIFPIQDNHGRIIGFGGRSL-NDMSPKYLNSPETDI 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+K K +Y  +  +    K +          ++++VEGY+DV++L Q  +   VS LGT+
Sbjct: 235 FYKRKQIYGLYQVIKKCSKPV----------YLLVVEGYIDVITLTQYNIDYAVSILGTS 284

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            T   ++LL+K +  I+ C+DGDD G  AA+K +   L ++     + F+LL   EDPD+
Sbjct: 285 TTTEHIQLLFKNTDIIICCYDGDDAGKNAAWKTLKKALPYISDKKTLKFILLPNQEDPDT 344

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            IR  G+  F+K I  ++ +    +K   +N + ++ D++  L +H    IN I    +R
Sbjct: 345 IIRKEGREKFQKRIDNAITMSKFFFKNILKNINLSSDDDKFHLSVHALPLINTISSDTIR 404

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
            Y  Q +   +  L      +             +   K                     
Sbjct: 405 IYLRQILARMIGILDDNQFEKFLYEKETKNTQKTYFQIKRTPM----------------- 447

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQ----KLWSFLFSDFVEQKYFLPEEI 537
                L+  L+ +P++ +     LA +      LQ     ++  +     +       ++
Sbjct: 448 ---RTLIGLLVQNPSLAK-----LAPVTMKFKNLQIKGLSIFLEILQTCRDNPNIHTGQL 499

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +         +LK L R   D  +    T+   +D+       +   +R  L+++++++
Sbjct: 500 LELYRNTTIINVLKILARW--DHMIIQKETQNMFLDLLMNIHDKILEKRREYLIAKERKK 557


>gi|46580199|ref|YP_011007.1| DNA primase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602414|ref|YP_966814.1| DNA primase [Desulfovibrio vulgaris DP4]
 gi|46449616|gb|AAS96266.1| DNA primase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562643|gb|ABM28387.1| DNA primase [Desulfovibrio vulgaris DP4]
 gi|311233813|gb|ADP86667.1| DNA primase [Desulfovibrio vulgaris RCH1]
          Length = 572

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 163/621 (26%), Positives = 273/621 (43%), Gaps = 65/621 (10%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
             ++ +   + + ++  +YV+  R       G + A CPFH E  PSF  N+ +GF+YCF
Sbjct: 7   SVVQAIKSRLNLVDIARRYVELRRAG-----GRWMAPCPFHQETKPSFSINEEEGFFYCF 61

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLIEV 123
            C   GD   F   + G  F E++++LA  AGV L     DP+ ++++ ++   +R+ +V
Sbjct: 62  GCQASGDLFDFYGRINGLDFRETLEQLAEEAGVALDDWKPDPRAQQEQSLRRQCLRMYDV 121

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
           A   F  +L     +    Y+  R I    IE F+LG++     SL + LR+ GF++   
Sbjct: 122 ARAHFVGNLAKREGQECRDYMQRRAIAPEIIESFELGWSLREWQSLADTLRRAGFAQGLA 181

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
           ++AGLL    +S  +YDRFR RLIFPI+S  GQVIAFGGR +++ +  KY+NS ++ ++ 
Sbjct: 182 VKAGLL-ATSDSGRAYDRFRGRLIFPIKSLAGQVIAFGGRIIAEDDQAKYINSSDSPIYK 240

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           KG +LY  + A   +          +     +L EGYMDVL+L Q G  N V  LGTALT
Sbjct: 241 KGDHLYGLYQARRAI----------SQHKVAMLTEGYMDVLTLHQFGYNNAVGVLGTALT 290

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
             Q++ L      + L FDGD+ G +AA ++ ++    L+ G R   VLL +GED DS +
Sbjct: 291 PEQVKRLSGFCSTVELLFDGDNAGRKAALRSCEM---LLVRGMRCKVVLLPQGEDIDSLL 347

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
              G+ AFE +  E+   +D   +        +  D               ++  +L  Y
Sbjct: 348 HGAGRDAFESIRNEAPDGLDFCMRSLAAQAPRDMLDWTKGFL-------AQVEQPELLSY 400

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y   +   L     +                  RD      +   ++  K  +++  + R
Sbjct: 401 YITRLAGGLGLNEAEL-----------------RDSLAERVKAHAAAPAKKPVARGHASR 443

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  ++   + +P  L +  +  AD+       + LW  +     E               
Sbjct: 444 DREIMTFAVRYPHCLPQLQEAGADLVLGTEWARTLWDKIERHGAE--------------- 488

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI- 602
               E++  L  + +   +   T E   +D  +G   A+        L  Q       + 
Sbjct: 489 ----EVVDHLSEREKTFWIRCRTGEVPPLDNEEGELAAVRHMLADMQLKVQSASCMAALR 544

Query: 603 AQVTAKGEAEKTAILISILHE 623
            Q+    +      L+  L E
Sbjct: 545 QQMGGVSDPAADIELLRALQE 565


>gi|108757060|ref|YP_633356.1| DNA primase [Myxococcus xanthus DK 1622]
 gi|1709770|sp|P50070|PRIM_MYXXA RecName: Full=DNA primase
 gi|710342|gb|AAB60207.1| primase [Myxococcus xanthus]
 gi|108460940|gb|ABF86125.1| DNA primase [Myxococcus xanthus DK 1622]
 gi|1586811|prf||2204381C dnaG gene
          Length = 606

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 145/641 (22%), Positives = 255/641 (39%), Gaps = 63/641 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   I+++L  + +  LI ++VD  +        ++ ACCPFH EKTPSF+    K FY
Sbjct: 5   IPEHKIQEVLERVDLVGLISRHVDLKKAGR-----EWKACCPFHQEKTPSFYVVPEKRFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +C  C   GD +SF+   LG +F+++V+ LA   GV L        +    +  +    +
Sbjct: 60  FCHGCRASGDAVSFVQRYLGKTFLDAVRDLARELGVDLEAEQDPSMR---ERQQIKEATD 116

Query: 123 VATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A + F   L      +    Y+  RG+       F LG+AP    SL E  ++ G  E 
Sbjct: 117 QAAEHFRAMLWQQDEGRSARAYIASRGVSDETAMAFGLGWAPLEWASLTERFQKLGMLEW 176

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
               AGL++  ++    YD FR+R++ PIR+  G+ IAFGGR +   E  KYLNS E+ L
Sbjct: 177 AAK-AGLVLKRNSGDGYYDFFRSRVMVPIRAPEGRPIAFGGRLIGADEGPKYLNSRESRL 235

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           ++K + L+    + + ++K              +LVEGY D L L Q GV++ V+   T 
Sbjct: 236 YNKSETLFGMDQSRDEIRK----------RKAAVLVEGYFDALGLHQVGVRHAVALCSTN 285

Query: 302 LTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           LT   +++L +   R ++L  DGD  GL A  +   L    L  G      LL +G+DPD
Sbjct: 286 LTAGHMQVLKRAEARELILLLDGDSAGLAAVER---LSGPLLAAGATARVALLPQGDDPD 342

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           +F R  G+   E+L+  + PL   L+          + +E+      LK  +  +    +
Sbjct: 343 TFARREGQEGVERLLEGAHPLTSHLFASLLPEGKAASFEEKMAALERLKPVVGQVPVGLV 402

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R     A+ +           +     R      +      P     + +     L K P
Sbjct: 403 RATLFSAVAEHFGW----RPADVEAALRSKVPLPKPAGGDAPPSSPNRPAPP---LEKPP 455

Query: 481 SLREAALLLTLINHPAILQ----EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
              E   +  ++  P ++         EL+ +               +            
Sbjct: 456 PALECFYVGAVLKEPRLMARDTFRVCDELSHMGL---------RMALAHATSGHGANDAL 506

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                         + + R +  A     +    +        + + + +    +  +  
Sbjct: 507 FESS----------EAVKRGIESALRQLPSEPVPLEAAFLSICREIMVRR----IDERLV 552

Query: 597 EIEKQIAQVTAKGE-AEKTAILI---SILHEVHIQ-IHQIE 632
            I++   Q     +  E+T  L+     L  +  + + +++
Sbjct: 553 YIKRATEQTPGAFDLTEETRQLLVERVELLALKKRVLEELK 593


>gi|257414235|ref|ZP_05591949.1| DNA primase [Roseburia intestinalis L1-82]
 gi|257200739|gb|EEU99023.1| DNA primase [Roseburia intestinalis L1-82]
          Length = 354

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 115/344 (33%), Positives = 176/344 (51%), Gaps = 21/344 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y  D I+++     I ++I QYV   ++ +      Y+  CPFH+EKT SF  + +K  Y
Sbjct: 21  YSDDIIEEVRSRNDIVDVISQYVRLSKKGS-----TYFGLCPFHNEKTGSFSVSPNKQMY 75

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
           YCF C   G+  +FL      +F E+++ LA  AGV LP  +    ++++   +  L+ +
Sbjct: 76  YCFGCGAGGNVFTFLMEYENFTFGEAMEALADRAGVELPKQEYTSAQRQEADKRARLLEI 135

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A  +F+  L+  R  R   Y  +R +    ++ F LGY+      L  +LR+KG+ +
Sbjct: 136 NKEAAKYFYMLLRGERGARALSYFRKRELSDETMQKFGLGYSDQYSDDLYRYLRKKGYED 195

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + + E+GL +  D     YD+F NR +FPI     +VI FGGR +      KYLNSPET 
Sbjct: 196 DILKESGL-VSIDERRGGYDKFWNRAMFPIMDVHNKVIGFGGRVM-GDGEPKYLNSPETK 253

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K +NLY    A                   ++L EGYMDV++L QAG  N V+SLGT
Sbjct: 254 IFDKSRNLYGLNFAR------------STKKPQLLLCEGYMDVIALHQAGFDNAVASLGT 301

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344
           ALT     LL + +  + L +D D  G++AA +AI         
Sbjct: 302 ALTSGHANLLKRYTKNVYLTYDSDGAGVKAALRAIPYFKRSRNH 345


>gi|197121173|ref|YP_002133124.1| DNA primase [Anaeromyxobacter sp. K]
 gi|196171022|gb|ACG71995.1| DNA primase [Anaeromyxobacter sp. K]
          Length = 647

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 155/642 (24%), Positives = 249/642 (38%), Gaps = 48/642 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   I  +   + +  +IG++++  R         +   C FH E+TPSFH       +
Sbjct: 17  IPDAVIDQIRERVDVVAVIGRHMELKRSGR-----TWKGNCIFHGERTPSFHVYPEDKHF 71

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDLI 118
            C+ C   GD  +FL  L G  F E V+ LA   GV +P        +   K K + +++
Sbjct: 72  KCYGCGAYGDVFTFLQRLEGKEFPEVVRALAQEVGVEIPEAAEEDSAEARAKRKERNEVL 131

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              + A  ++   L +        YL+ RG+   ++  F+LG A D+   L   L++KG 
Sbjct: 132 AASDAAARYWAARLASRFGAPARAYLERRGVTEESVRRFRLGVAADAWNDLAPRLKEKGI 191

Query: 179 SEEKIIEAGLLIDGDNS-ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
               +  AGL+I+ +     +YDRFRNRL+FPI    GQVI FGGR L   +  KY+N+P
Sbjct: 192 GVAALQRAGLVIERERDGGGTYDRFRNRLMFPIAGMDGQVIGFGGRALGDEQGAKYINTP 251

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET L+ K K LY    A   ++K          +   +LVEGY DV+ L Q GV   V+ 
Sbjct: 252 ETPLYKKSKVLYGLDLARETIRK----------TRSAVLVEGYFDVIGLHQVGVTGAVAV 301

Query: 298 LGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            GTALT   + LL +     + + FDGD  GL A  KA   +    + G        +  
Sbjct: 302 CGTALTPEHVELLSRCDCREVTVLFDGDVAGLAAPAKAAQALFPAGMAGKVAVLPSAAGK 361

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP-----DERAELEIHLKNC 411
            DPD + R  G+   + L+  ++PL + L  R  E    + P     + +      L+  
Sbjct: 362 SDPDEYARANGRAGVDALLTAAVPLSEFLVDRAVERACGDRPREAALERKLAAVRELEPF 421

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  + +   R  +   I  RL        TE S   R     A              S  
Sbjct: 422 VRMMPEGLARSVFEDMIARRLDLDPGALRTELSAERRRPGVPAPAPTGHPERPSGAPSRP 481

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW----------SF 521
                  +      A +  L+  P    +    LA         ++            + 
Sbjct: 482 TPSAGPARGGPPAHARVRVLL--PGPAADALALLAAFPDLGPVAEEERLPQLLPPGPLAD 539

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L  D V     L + +  RL         ++    V          E    ++R+   +A
Sbjct: 540 LARDLVRGPVALDDAL-ARLSSGADEATARRFRTLVGPGR---PRPEEAERELRKAAVKA 595

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
                    L ++  E  +++ +  +   A+   +    L  
Sbjct: 596 T-----LERLDQEYGEALRRVTKAGSAA-ADGLDVTAQRLIN 631


>gi|269792834|ref|YP_003317738.1| DNA primase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100469|gb|ACZ19456.1| DNA primase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 564

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 157/605 (25%), Positives = 246/605 (40%), Gaps = 60/605 (9%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +   I I +L+  Y+   +R        Y A CPFH E+TPSF  +  +  Y+CF C   
Sbjct: 8   IKERIDIVDLVSSYIPLRKRGR-----SYVALCPFHSERTPSFTVSRERQTYHCFGCGKG 62

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
           GD  SF+  +    F E++++LA +AGV L             +     ++E A  FF  
Sbjct: 63  GDIFSFVMEMENLPFREALEKLAPMAGVQLDSGPG--------RRRSRDVLEEALRFFRD 114

Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190
           +L +        YL+ R +D  A+E+F++G+AP S  +LR+HL   GFS E+++E GLL+
Sbjct: 115 ALASREGAYAAAYLERRRLDRRALELFEIGWAPASWGALRDHLSSLGFSREEMLEVGLLV 174

Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250
           +   S   YDRFR R+IFP+R+  G+++ FGGR L  GE  KY+NSPE  LF K K LY 
Sbjct: 175 E--GSKGPYDRFRGRVIFPLRNETGRLVGFGGR-LVDGEGAKYVNSPEGPLFEKRKFLYL 231

Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310
              A + +++  R          +ILVEGYMD +     G    V+ LGT+LTE Q  ++
Sbjct: 232 LNMAKHAIRERGR----------VILVEGYMDAIRCHLTGFSEAVACLGTSLTEEQCGVI 281

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
            + + R ++CFD D  G  A  + + ++      G  V  V L RG+DP           
Sbjct: 282 ARHADRCLICFDSDLAGQEATIRGMYMLNRL---GVDVEVVRLPRGKDP---------DE 329

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
                  +      L                        + ++ +    L   Y +    
Sbjct: 330 LLSQPDGASDFRRALESTLPLPVFHAEVKGGGGSLKETGDLLDQL--ATLSPAYLKRHMP 387

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           R+ +       E            R    +       ++S+   +   +  L E  L   
Sbjct: 388 RVAEALSLLPHEVE----REVAGRRSSKPRVAEPARREASVPPSRGDSREDLWEWGLCSL 443

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           L  +P +   Q  E         E + L   L           PEE+  R    G    L
Sbjct: 444 LWTNPDLRSRQSPEALLPLLMREEARVLVLALL------CGERPEELESRWHRTGETVFL 497

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
             L +                  +       L   +R R L R+ E ++ +IA+     +
Sbjct: 498 SVLAKGGAFIDGLG---------LDDPLGAVLLNLERNRDL-RRYEALKVKIARGDQVTQ 547

Query: 611 AEKTA 615
            +   
Sbjct: 548 EDLRE 552


>gi|295397566|ref|ZP_06807645.1| DNA primase [Aerococcus viridans ATCC 11563]
 gi|294974190|gb|EFG49938.1| DNA primase [Aerococcus viridans ATCC 11563]
          Length = 639

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 148/654 (22%), Positives = 274/654 (41%), Gaps = 58/654 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P + I ++  ++ I ++  Q+VD  +R  N     Y+  CPFH+E+TPSF  N+ K  +
Sbjct: 13  IPEEIINEVKNNVNILDVTSQFVDLQKRGRN-----YFGYCPFHEERTPSFTVNEEKQIF 67

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV------VDPKIEKKEKIQTD 116
           +CFSC   G+   F+  + G SF ++VQ++A    V +           +      +Q  
Sbjct: 68  HCFSCGRGGNVFRFMEEIEGYSFPQAVQKVAEAGNVSISFDWSALDDGQQTTNYSSVQNR 127

Query: 117 LIRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           LI + E    F+H+ L N     +   YL +RG+    ++ +++G AP+      +HL  
Sbjct: 128 LIHIHEELRKFYHYLLMNTGNGHQGLIYLYDRGLSKETLDAYQIGIAPEDGRLAAQHLLN 187

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV---- 231
           K F+ E++  +G  I   +     DRF  R++FP+R+ +G+ + F GR L          
Sbjct: 188 KEFTTEELQNSG--IFVGDQDRLKDRFAGRVMFPLRNPQGKTVGFSGRILPGSNHYENHP 245

Query: 232 ---KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
              KYLNSPET +F K   L+N   A N  ++          +  ++L EG+MDV++   
Sbjct: 246 DAAKYLNSPETEIFEKNTFLFNLDLAQNEARR----------AKELVLFEGFMDVIASHN 295

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
            GV N V+S+GT+LT  Q++ + + S ++++ +DGD PG +A  +AI+L+        ++
Sbjct: 296 EGVGNGVASMGTSLTSNQIKAIERTSKQVLIAYDGDKPGQKATLRAINLIQDQSSR-LKL 354

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLI-VESLPLVDMLWKRETENRSFNTPDERAELEIH 407
           N +   +  DPD FI+ YG   +   +  + L  +  +     +  S  T + + +    
Sbjct: 355 NVLAFEQNLDPDEFIQKYGGERYVNFVLNKRLSPIHFMRNYYRQEFSLETDNGKIQFINV 414

Query: 408 LKNCINHIKDQKLRYYYSQAIRD--------RLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
           +   I  I+    R  Y   I +         LQQL        S        +   +  
Sbjct: 415 MLEAIAKIQRAIDRDIYVGEIAEDTGVSKDTLLQQLESYSPKNQSHQSYQADDHGNQQSF 474

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
              +   +       K   +    E  LL  L+ +            D  + ++E++ ++
Sbjct: 475 PANNTLQLGIPAATSKKKSQLEKSELLLLYRLLYNSETWLLIANR--DFHFQSSEVETVF 532

Query: 520 SFLFSDFVEQ----KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
             L               P +  Q L       L+ ++              E       
Sbjct: 533 MLLSDYRENNQNMDGELDPGDFLQALSGAEEQRLVAEVMNM-----------EVAPDIGE 581

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
              +  +   +    + ++ + ++ +IA   +  +  +  ILI    ++  QI 
Sbjct: 582 GEVEDLIYNIQIKGNIEQKMQSLDDEIAYAKSVDDFAQIGILIKQKIDLLKQIK 635


>gi|86157147|ref|YP_463932.1| DNA primase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773658|gb|ABC80495.1| DNA primase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 647

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 151/639 (23%), Positives = 245/639 (38%), Gaps = 42/639 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   I  +   + +  +IG++++  R         +   C FH E+TPSFH       +
Sbjct: 17  IPDAVIDQIRERVDVVAVIGRHMELKRSGR-----TWKGNCIFHGERTPSFHVYPEDKHF 71

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDLI 118
            C+ C   GD  +FL  L G  F E V+ LA   GV +P        +   K K + +++
Sbjct: 72  KCYGCGAYGDVFTFLQRLEGKEFPEVVRALAQEVGVEIPEAAEEDSAEARAKRKERNEVL 131

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              + A  ++   L +        YL+ RG+   ++  F+LG A D+   L   L++KG 
Sbjct: 132 AASDAAARYWAARLASRFGAPARAYLERRGVTEESVRRFRLGVAADAWNDLAPRLKEKGI 191

Query: 179 SEEKIIEAGLLIDGDNS-ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
               +  AGL+I+ +     +YDRFRNRL+FPI    GQVI FGGR L   +  KY+N+P
Sbjct: 192 GVAALQRAGLVIEREKDGGGTYDRFRNRLMFPIAGMDGQVIGFGGRALGDEQGAKYINTP 251

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET L+ K K LY    A   ++K          +   +LVEGY DV+ L Q GV   V+ 
Sbjct: 252 ETPLYKKSKVLYGLDLARETIRK----------TRSAVLVEGYFDVIGLHQVGVTGAVAV 301

Query: 298 LGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            GTALT   + LL +     + + FDGD  GL A  KA   +    + G        +  
Sbjct: 302 CGTALTPEHVELLSRCDCREVTVLFDGDVAGLAAPGKAAQALFPAGMAGKVAVLPSAAGK 361

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP-----DERAELEIHLKNC 411
            DPD + R  G+   + L+  ++PL + L  R  E    + P     + +      L+  
Sbjct: 362 SDPDEYARANGRAGVDALLAAAVPLSEFLVDRAVERACGDRPREAALERKLAAVRELEAF 421

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +  + +   R  +   I  RL        TE S   R     A              S  
Sbjct: 422 VRMMPEGLARSVFEDMIARRLDLDPGALRTELSAERRRPGVPAPAPAGHPERPAGAPSRP 481

Query: 472 VKGKLSKKPSLREAALLLTLI-------NHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                  +        +  L+                   +AD       L        +
Sbjct: 482 TPPAGPARGGPAGHGRVRVLLPGPAADALALLAAFPDLGAVADEERLPQLLPPGPLADLA 541

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
             + +     E+   R+        L++    V          E    ++R+   +A   
Sbjct: 542 RDLVRGPVALEDALARMSAGADEATLRRFRTLVGPGR---PRPEEAERELRKAAVKAT-- 596

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
                 L ++  E  +++ +  +   A+   +    L  
Sbjct: 597 ---LERLDQEYGEALRRVTKAGSAA-ADGLDVTAQRLIN 631


>gi|33602138|ref|NP_889698.1| DNA primase [Bordetella bronchiseptica RB50]
 gi|33576576|emb|CAE33654.1| DNA primase [Bordetella bronchiseptica RB50]
          Length = 676

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 139/454 (30%), Positives = 227/454 (50%), Gaps = 27/454 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI+DLL  + + +++G+YV   +   N +       CPFH+EK+PSF  + +K FY
Sbjct: 2   IPESFIQDLLARVDVVDVVGRYVQLRKGGANLL-----GLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQT----D 116
           +CF C   G  ++FL    G SF E+V+ LAA  G+ +P     P+ + +   +      
Sbjct: 57  HCFGCGAHGSAITFLMEHTGASFPEAVRTLAAAVGLTVPEENRSPRQQAESARRKAEVSR 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             ++++ A   +   L+ +   +   YL +RG+       F LG++   R+ L       
Sbjct: 117 HTQVLDAAQAHYLRQLRGS--PQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVF--D 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            + +  ++EAGL+I+ ++    YDRFR R++FPIR++RG +I FGGR + KGE  KYLNS
Sbjct: 173 NYEDPVLVEAGLVIESEDGRR-YDRFRERVMFPIRNARGSLIGFGGRIIGKGEP-KYLNS 230

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET LF KG  LY  + A   ++              +++VEGYMDV+ L Q G+ N V+
Sbjct: 231 PETPLFSKGHELYGLWEARLAIR----------QEGQVVVVEGYMDVVGLAQQGIANAVA 280

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGT+ T   ++ L + S +++  FDGD  G RAA++A+   L  L     + F+ L   
Sbjct: 281 TLGTSTTPDHVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAE 340

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPDS++R  G  AF   + E++ L   L        +    + RA      K  +  I 
Sbjct: 341 HDPDSYVRELGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIP 400

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
           +  LR    + +   +Q   ++     +      
Sbjct: 401 ECALRVQIERELARLVQLTPEEMAQVLAQQPARP 434


>gi|291296064|ref|YP_003507462.1| DNA primase [Meiothermus ruber DSM 1279]
 gi|290471023|gb|ADD28442.1| DNA primase [Meiothermus ruber DSM 1279]
          Length = 592

 Score =  291 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 163/629 (25%), Positives = 281/629 (44%), Gaps = 53/629 (8%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I+ +   +PI  L+G+YV           G +   CPFH EKTPSF  ++ KG  YCF C
Sbjct: 9   IELIRSRMPIRELVGRYVALKPSGK----GVWKGLCPFHQEKTPSFQVSEDKGLCYCFGC 64

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
              GD  +FL  + G  F E+++RLA   GV LP        +   + + ++++E+   +
Sbjct: 65  KNGGDIFAFLQKIEGIGFREALERLAQETGVELPQFKG----RSSGRKEALQILELTQAY 120

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
           F  +L          YL ERG++  +IE F LGYAP S   L  HL+  G   ++ +EAG
Sbjct: 121 FRANL----SGSAERYLQERGLNPASIERFGLGYAPKSWDGLIRHLQGHGVDPQEAVEAG 176

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247
           +L++       +DRFR+R+ FP+    G+++AF  R L K ++ KYLNSPET LF K + 
Sbjct: 177 VLVE--REGRYFDRFRHRVTFPVLDPMGRIVAFTARALEKDDNPKYLNSPETALFKKSQL 234

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           LY +  A + +++  R           ++VEG  DV++L Q G    V+ LG++L+  Q 
Sbjct: 235 LYGYPQARSTIRERGRA----------VVVEGLFDVIALHQMGFTEAVAVLGSSLSGEQA 284

Query: 308 RLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS-FIRC 365
            LL +  +  + L FD D+ G +A  ++++L    +     V  VLL  G+DP    +  
Sbjct: 285 HLLRRADAAELYLAFDADEAGRKATLQSLNL---EIARSFVVYAVLLEDGKDPGDLLLLP 341

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            GK  FE  +  +LP V+  ++          P+ + ++   LK     I  +       
Sbjct: 342 DGKERFEVALEAALPEVEYRFEAAAAGLDLKRPEHKQKVLEALKP--RLISSEPF-DPVV 398

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + ++ ++    +        Y    +     R       R +   L +  L++K  LRE 
Sbjct: 399 EKLKAKVISALELSPRALEDYLARAR--TPKRAASAAPDRTLGIGLARPDLTEKRLLREL 456

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            ++  L + P       +E         +           +  +   L E +     E+G
Sbjct: 457 DVIALLYSVPE------EEFLQWALYVEDH---------TWPPEGSLLAEFMQAARSEQG 501

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
              +L+  +++   A L     ++   D +           R R +  +   ++K  AQ+
Sbjct: 502 KSRILRYFEQRGEGARLMDVLMKSPSFDQQNLEAHLNVALARVREVYYELR-LDKLKAQL 560

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +  + +KT  L   + EV   +  IE++
Sbjct: 561 NSTADLDKTRTLTKEIQEV---LQAIEAE 586


>gi|33597398|ref|NP_885041.1| DNA primase [Bordetella parapertussis 12822]
 gi|33573825|emb|CAE38133.1| DNA primase [Bordetella parapertussis]
          Length = 683

 Score =  291 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 142/488 (29%), Positives = 233/488 (47%), Gaps = 27/488 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI+DLL  + + +++G+YV   +   N +       CPFH+EK+PSF  + +K FY
Sbjct: 2   IPESFIQDLLARVDVVDVVGRYVQLRKGGANLL-----GLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQT----D 116
           +CF C   G  ++FL    G SF E+V+ LAA  G+ +P     P+ + +   +      
Sbjct: 57  HCFGCGAHGSAITFLMEHTGASFPEAVRTLAAAVGLTVPEENRSPRQQAESARRKAEVSR 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             ++++ A   +   L+ +   +   YL +RG+       F LG++   R+ L       
Sbjct: 117 HTQVLDAAQAHYLRQLRGS--PQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVF--D 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            + +  ++EAGL+I+ ++    YDRFR R++FPIR++RG +I FGGR + KGE  KYLNS
Sbjct: 173 NYEDPVLVEAGLVIESEDGRR-YDRFRERVMFPIRNARGSLIGFGGRIIGKGEP-KYLNS 230

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET LF KG  LY  + A   ++              +++VEGYMDV+ L Q G+ N V+
Sbjct: 231 PETPLFSKGHELYGLWEARLAIR----------QEGQVVVVEGYMDVVGLAQQGIANAVA 280

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGT+ T   ++ L + S +++  FDGD  G RAA++A+   L  L     + F+ L   
Sbjct: 281 TLGTSTTPDHVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAE 340

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPDS++R  G  AF   + E++ L   L        +    + RA      K  +  I 
Sbjct: 341 HDPDSYVRELGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIP 400

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +  LR    + +   +Q   ++     +        +A    Q        +        
Sbjct: 401 ECALRVQIERELARLVQLTPEEMAQVLAQQPARPLASAAAPAQASAPAAGREGGPGHADE 460

Query: 477 SKKPSLRE 484
           +      E
Sbjct: 461 APPDWAFE 468


>gi|315023240|gb|EFT36250.1| DNA primase [Riemerella anatipestifer RA-YM]
          Length = 625

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 143/644 (22%), Positives = 268/644 (41%), Gaps = 54/644 (8%)

Query: 18  SNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL 77
             ++G+YV   R  +N     Y    PF DEKTPSF  + SK  +  FS    G  +SFL
Sbjct: 2   EEIVGEYVQLKRAGSN-----YKGLSPFVDEKTPSFIVSPSKQIWKDFSSGKGGTAISFL 56

Query: 78  SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDLIRLIEVATDFFHHSLK 133
             +   S+ E+++  A   G+ +     ++ ++EK     +  L ++ EVA  ++   + 
Sbjct: 57  MEIENFSYPEALRFAAKKYGIEIEEHQRELTEEEKTAQTEKDLLYKIHEVANHYYQKQIW 116

Query: 134 NARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191
              + +     Y  ER +    I+ F+LGY+P  + +  E+   KG+++E + ++GL I 
Sbjct: 117 ETEEGKSIGLSYFKERELREDIIKKFQLGYSPIQKNAFTEYAISKGYTKEILEKSGLSIF 176

Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILFHKGKNLYN 250
            D +    DRFR R+IFPI S  G+V+ FG R L    ++ KYLNSPET ++HK   LY 
Sbjct: 177 TDYAPDGLDRFRERVIFPIHSFSGRVLGFGARILKSNVKTAKYLNSPETEIYHKSNVLYG 236

Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310
              +   + K           +  +LVEGYMDV++L QAG+++VV+S GTALT  Q++L+
Sbjct: 237 LNQSKQAISKQ----------NLCLLVEGYMDVVALHQAGIEHVVASSGTALTTEQIKLI 286

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
            +L+  + + FDGD  G++A++++ID++L     G  +  +L   G+DPDSF R + K  
Sbjct: 287 KRLTENVTILFDGDAAGIKASFRSIDMLLSE---GMNIRILLFPDGDDPDSFSRKHPKEF 343

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
            E  I  +                 + P +++E    +   +  + +   +  Y + I +
Sbjct: 344 VEDFIQNNAQDFINFKAEILLKDVEHDPIKKSEAIRDIVKSVAFVGNVLKQEIYLKEISN 403

Query: 431 RLQQLFQKYITEH--SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           +     Q    E       +  +     +    P  +L   +    K +      E  ++
Sbjct: 404 KFGLSEQSLFNELGIQQQVKEQQHLTPKKATPQPQPKLEVITSDFTKANTALLYLEEQMV 463

Query: 489 LTLINHPAILQEQYQ------------------ELADIRYDNNELQKLWSFLFSDFVEQK 530
             ++ +   + E                     E  +    +   +K+ + +       +
Sbjct: 464 ELMLKYGDYIIEMKDAEDKVYQTTVIEEVICRMEEDNCEIQSETNKKIINEIKQGIQTNE 523

Query: 531 YFLPEEIHQRLCERGFGELLKQL-DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                     + E    ++   L +                                +  
Sbjct: 524 LRSERFFITLMNEEITNKVANALVEPYQLSDWKKHNIYLLPKEKSINKLVADTIYRYKRE 583

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            + +  E+++          EAE    +   + ++ +  + I+ 
Sbjct: 584 YIMKMIEDLKN--------TEAEDKTEIYQKIIKLTMLKNTIDQ 619


>gi|297181478|gb|ADI17665.1| DNA primase (bacterial type) [uncultured gamma proteobacterium
           HF0130_23I23]
          Length = 581

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 161/630 (25%), Positives = 283/630 (44%), Gaps = 60/630 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PRDFI  L+    I +++  Y+D  ++  N     Y   CPFH+EKT SF  +  K  
Sbjct: 4   SIPRDFIDRLVSDSDIVSVLSAYLDLQKKGNN-----YVCRCPFHEEKTGSFTVSPQKSI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   G+ L+F+    G +F+E+V++LA I  V +P       +     +++ +L 
Sbjct: 59  YHCFGCGKGGNVLTFIQEYEGLNFVEAVEKLAEINNVTVPRESRSNAE---DYSNIYQLN 115

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           +V  D +  +LK+ ++K +  YL ERG+     + F +GYA   +  L++ L  +     
Sbjct: 116 QVLADSYLSALKDKKNKPVVDYLKERGVTGETAKKFLIGYADFDQKELKKKLIDQFSEAT 175

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +     L    N    Y  FRNRL+FPI++S G++I FGGRT+      KYLNS ++  
Sbjct: 176 LLKSGNFLK---NEKGMYPFFRNRLMFPIKNSTGKIIGFGGRTI-DDSMPKYLNSKDSKF 231

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+K + LY F  A    +             F I+ EGYMDV+ L Q G++N V+SLGTA
Sbjct: 232 FNKSRELYGFNSAKQDHK-----------LDFFIVTEGYMDVVMLSQHGIENSVASLGTA 280

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            +   L+ L+KL  +IV CFD D+ GL+AA++++ + L  +     V F+ L  GEDPDS
Sbjct: 281 FSISHLQKLFKLKRKIVFCFDSDEAGLKAAWRSLQISLSQVFDDKTVRFLFLPEGEDPDS 340

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           F++  G+ AF + I  S+ +   +++     R+ ++P++   +    K  I   K + L+
Sbjct: 341 FVKENGQEAFLEKIERSMVIETFVFQFLKRGRNIDSPEDIRLIIFDFKKIIEATKSETLK 400

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               Q     L       +T+                     Q+ +   L K K      
Sbjct: 401 ETLLQKFAKELNMNKDLLLTQ------------------DAPQKKISKPLSKKKEKLDFD 442

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                ++    N+  I++   +   D   +                  +    +E  + +
Sbjct: 443 NESCLIIYLYENYSQIIKNSTESFEDFLLN--------------AENDRLSDLKETIKSI 488

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +    +  K+L    +   +    ++   ++        L L      L   K+  EK+
Sbjct: 489 SKA--SQAHKELSIYAKSMMIDMNLSDEEALNEFNRVTDNLRLEFDKSFLEYLKKLAEKR 546

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             ++T +   E    L+++   + +Q  ++
Sbjct: 547 --ELTPER-KENLQKLLNLSDNISVQEEEL 573


>gi|33593189|ref|NP_880833.1| DNA primase [Bordetella pertussis Tohama I]
 gi|33563564|emb|CAE42463.1| DNA primase [Bordetella pertussis Tohama I]
 gi|332382600|gb|AEE67447.1| DNA primase [Bordetella pertussis CS]
          Length = 676

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 141/488 (28%), Positives = 232/488 (47%), Gaps = 27/488 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI+DLL  + + +++G+YV   +   N +       CPFH+EK+PSF  + +K FY
Sbjct: 2   IPESFIQDLLARVDVVDVVGRYVQLRKGGANLL-----GLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQT----D 116
           +CF C   G  ++FL    G SF E+V+ LAA  G+ +P     P+ + +   +      
Sbjct: 57  HCFGCGAHGSAITFLMEHTGASFPEAVRTLAAAVGLTVPEENHSPRQQAESARRKAEVSR 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             ++++ A   +   L+ +   +   YL +RG+       F LG++   R+ L       
Sbjct: 117 HTQVLDAAQAHYLRQLRGS--PQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVF--D 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            + +  ++EAGL+I+ ++    YDRFR R++FPIR++RG +I FGGR + KGE  KYLNS
Sbjct: 173 NYEDPVLVEAGLVIESEDGRR-YDRFRERVMFPIRNARGSLIGFGGRIIGKGEP-KYLNS 230

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET LF KG  LY  + A   ++              +++VEGYMDV+ L   G+ N V+
Sbjct: 231 PETPLFSKGHELYGLWEARLAIR----------QEGQVVVVEGYMDVVGLALQGIANAVA 280

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGT+ T   ++ L + S +++  FDGD  G RAA++A+   L  L     + F+ L   
Sbjct: 281 TLGTSTTPDHVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAE 340

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPDS++R  G  AF   + E++ L   L        +    + RA      K  +  I 
Sbjct: 341 HDPDSYVRELGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIP 400

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +  LR    + +   +Q   ++     +        +A    Q        +        
Sbjct: 401 ECALRVQIERELARLVQLTPEEMAQVLAQQPARPLASAAAPAQASAPAAGREGGPGHADE 460

Query: 477 SKKPSLRE 484
           +      E
Sbjct: 461 APPDWAFE 468


>gi|224373209|ref|YP_002607581.1| DNA primase [Nautilia profundicola AmH]
 gi|223588382|gb|ACM92118.1| DNA primase [Nautilia profundicola AmH]
          Length = 540

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 142/611 (23%), Positives = 252/611 (41%), Gaps = 78/611 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I++L   I I ++IG YV   ++ +N     Y A CPFH EKTPSF  + +K  Y
Sbjct: 2   IKPESIENLKSIIDIVDVIGNYVQLKKQGSN-----YTALCPFHSEKTPSFVVSPAKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+  +   S+ E++++LA +    L         +         ++E
Sbjct: 57  HCFGCGASGDAIKFVMDVEKLSYPEAIEKLANLYNFKLEYTKSGSNIRA-------DILE 109

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               F+   L     K  + YL +RGI+   IE F LGYAPDS    +          E 
Sbjct: 110 KVNAFYIQELYKN--KFAYDYLKQRGINDSTIEKFALGYAPDSMKQFQFFKNANLNINEL 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                L     +    Y R   R+ FPI S+ G++IA GGRT+      KY+N   T +F
Sbjct: 168 KALGVL-----SENGEYPRLIERITFPIFSASGKIIAMGGRTI-TNHPAKYINFTNTKIF 221

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           +K K  Y    A  ++ +              I+VEGYMDV+ L QAG    +++LGTAL
Sbjct: 222 NKSKTFYGLNFAREHILRK----------KEAIIVEGYMDVIMLHQAGYNTAIATLGTAL 271

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L  L KL  +I+L +D D  G+ AA KA  L+      G     +L   G DP   
Sbjct: 272 TPDHLPQLQKLGAKILLSYDSDSAGINAALKASKLLFRSFFEG---GVILFPEGLDPADV 328

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++        +     +P ++ + +   +      P ++ +    LK  I  +  + L+ 
Sbjct: 329 VKSGN--DLNEYFKNQIPFLEFIIEYTIKKYDIKNPLQKKQALDELKEYIFTLP-EILQE 385

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            +       LQ   +  +                           +S+  +   +KK  +
Sbjct: 386 SFVNKAAQYLQISPKLLLIR-------------------------RSNQPQATGNKKIEI 420

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL- 541
            EA+++ TL  +P ++ E  + L+   +  +  +   S ++ +  +    L   + + + 
Sbjct: 421 AEASIIKTLYENPHLMDEIVEYLSPDMFKTHRHE--LSLVYQEKFDDPALLDIVLREDVL 478

Query: 542 ---CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               E    +++K L    +   L   T+     +             + ++L+ +  ++
Sbjct: 479 CLNMEALKKQIIKLLIPYYQQKVLELKTSNLPTDE----------KMHKLKILNYKILQL 528

Query: 599 EK-QIAQVTAK 608
           +K ++ +  + 
Sbjct: 529 KKGELVESDST 539


>gi|242309257|ref|ZP_04808412.1| DNA primase protein [Helicobacter pullorum MIT 98-5489]
 gi|239524298|gb|EEQ64164.1| DNA primase protein [Helicobacter pullorum MIT 98-5489]
          Length = 552

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 142/595 (23%), Positives = 256/595 (43%), Gaps = 57/595 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I  L   + +  ++  Y++  +  +      + ACCPFH E TPSF  N SKGFY
Sbjct: 2   ITQESIDALKNQLDVVEVVSHYIELKKMGS-----TFKACCPFHQENTPSFVVNSSKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD ++F+      ++ E++++LA    V L   + K +  +        +++
Sbjct: 57  HCFGCGASGDSITFVMEYEKINYKEALEKLAQFYNVTLVYDNQKQQNIDSK------IMD 110

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
              D++     N   K +  Y+  RGI +   E F+LGYA  +   +    +     +E 
Sbjct: 111 FMNDYYQ----NGITKEVESYIHSRGISNAMKEKFELGYAGHNYEIMAYLQKNSVDMQEA 166

Query: 183 IIEAGLLIDGDNSAT-SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           +    L +D +N     Y R   RLIFPIRS + ++I FGGRTL      KY+NSP+T L
Sbjct: 167 LNLGILGVDNENGVKRYYARLTQRLIFPIRSPQNKIIGFGGRTL-GNHPAKYINSPQTKL 225

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+K + LY +  A   + K             II+ EGY+DV+ L QAG  N V++LGTA
Sbjct: 226 FNKSQILYGYPQAKESIYKK----------EEIIITEGYLDVIMLHQAGFTNAVATLGTA 275

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT+  L LL K +P+I++ +DGD+ G+ AA+KA  L+      G     VL   G DP  
Sbjct: 276 LTKEHLPLLSKGNPKIIVAYDGDNAGMNAAFKAASLLSLAKKEG---GVVLFDGGLDPAD 332

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            ++       ++L V  +PL+D + +   +      P ++ +    +   ++      ++
Sbjct: 333 MVKNGEIERLKELFVSPIPLIDFVLEEMIKKYDITNPVQKDKCLQEVLEYLHQF-SAVIQ 391

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y   +  +L+       T+     +                       +         
Sbjct: 392 EEYKGFLAQKLKLPSHLIKTQKYNEAK-----------------------IVKNQGDIYD 428

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           L E  ++ +++   ++L+     L    +     Q+ +  L    ++ K  +   +  ++
Sbjct: 429 LAEKIIIKSVLEDSSLLEYVMDFLEPSMFFTQ--QESFLKLIKGDLQDKSLIGILLDSKI 486

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             +   +L +Q+   +          +          ++A  L K  + L   K+
Sbjct: 487 KPQNKEKLKQQMIM-ILHKFYEEQKNKIIQDKNLSLREKAFLLRKYQKYLENLKK 540


>gi|163856345|ref|YP_001630643.1| DNA primase [Bordetella petrii DSM 12804]
 gi|163260073|emb|CAP42374.1| DNA primase [Bordetella petrii]
          Length = 682

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 142/445 (31%), Positives = 228/445 (51%), Gaps = 27/445 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI+DLL  + + +++G+YV   +   N +       CPFH+EK+PSF  + +K FY
Sbjct: 2   IPESFIQDLLARVDVVDVVGRYVQLRKGGANLL-----GLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQT----D 116
           +CF C   G  ++FL    G SF E+V+ LA   G+ +P     P+ + +   +      
Sbjct: 57  HCFGCGAHGTAITFLMEHTGASFPEAVRTLAGSVGMTVPEENRSPRQQAESARRKAEESR 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             ++++ A   +   L+ +       YL +RG+       F LG++   R+ L +     
Sbjct: 117 HTQVLDAAQAHYLRQLRASPAA--IQYLKQRGLTGEIAAHFGLGWSGTDRHGLAKVF--D 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            + +  ++EAGL+I+ ++    YDRFR R++FPIR++RG +I FGGR + KGE  KYLNS
Sbjct: 173 NYDDPTLVEAGLVIESEDGRR-YDRFRERVMFPIRNARGSLIGFGGRIIGKGEP-KYLNS 230

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET LF KG+ LY  + A   ++              +I+VEGYMDV+ L Q G+ N V+
Sbjct: 231 PETPLFSKGQELYGLWEARQAIR----------QEGQVIVVEGYMDVVGLAQQGIANAVA 280

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   ++ L + S R+V  FDGD  G RAA++A+   L  L     + F+ L   
Sbjct: 281 TLGTATTPDHVKKLLRSSDRVVFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAE 340

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPDS++R  G  AF   + E++ L   L +      +    + RA      K  +  I 
Sbjct: 341 HDPDSYVRELGAEAFRACLGEAMALSRFLLEELASRHNLAEAEGRASCLHEAKPLLAAIP 400

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYIT 441
           +  LR    + +  ++Q   ++   
Sbjct: 401 ECALRLQIEREMARQVQLTPEEMAQ 425


>gi|270307916|ref|YP_003329974.1| DNA primase [Dehalococcoides sp. VS]
 gi|270153808|gb|ACZ61646.1| DNA primase [Dehalococcoides sp. VS]
          Length = 590

 Score =  290 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 134/624 (21%), Positives = 263/624 (42%), Gaps = 56/624 (8%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS- 66
           ++++   + I + IGQY    +             CPFH EK  SF        ++CF  
Sbjct: 5   VEEIKQKLDIVSFIGQYTKLTKAGR-----TMRGICPFHSEKHGSFFVYPEAQNWHCFGA 59

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126
           C+  GD  +F+    G  F  +++ LA  AGV LP       +    +  L  +   A  
Sbjct: 60  CNTGGDIFAFVMKKEGLDFKGALELLAEKAGVSLP--SQINPQIRDQRERLYEINLAAAQ 117

Query: 127 FFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
           ++H+  L + + +    YL  RG++  ++  F+LGYA      L ++L+++ +++E++++
Sbjct: 118 YYHNLLLNSPQAESARSYLKSRGLNGQSLADFQLGYALPEWQKLYDYLKERSYTDEELLK 177

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
           AG+ I   +    +DRFRN +I+PI + +GQ+  FG R +      KY NSP+T LF K 
Sbjct: 178 AGV-IVRSDEGRIHDRFRNNIIYPIANYKGQIAGFGARVM-DNSQPKYRNSPQTDLFDKS 235

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
             LY    A   ++            +  I+VEGYMD +   Q G  N V+ +GTALT+ 
Sbjct: 236 SLLYGLHLASASIR----------EKNQAIIVEGYMDAIMSHQGGFTNTVACMGTALTDR 285

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
           Q+ L+ + +  +VL  D D  G  A  +AID         + +   +   G+DPD  IR 
Sbjct: 286 QIALIKRQTKNLVLGLDADSAGEEATLRAID---YENQIESEIRVAVPEGGKDPDEIIR- 341

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
           +    +++++  + PL+D ++K   +    ++   +A L   L   I+ ++D   + +Y 
Sbjct: 342 HAPQTWQEILDNARPLLDYIFKHSQKGLDLSSAAGKAGLTDRLLPIISKMEDGVRQSHYL 401

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             + + +           +   R  ++  + +++   ++ + + +      + K    E 
Sbjct: 402 GKLAEIVS----------TSQNRILERMKKLKNETRITKAIEKETTSTAVSAAKNPALEE 451

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L  L     +      +L     +  + ++L +         +    + +   L +  
Sbjct: 452 YALSLLFTSAEL-TRFAGKLHPEYLEIPQYRELLTVY------NQSAEKDTLRAGL-DEN 503

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             E    L  +                D  +     L L  R R L     ++ + ++++
Sbjct: 504 LREYYDNLMNKN------------AANDNIEDKFCDLCLRLRERYLRNLAVKLNQALSEI 551

Query: 606 TAKGEAEKTAILISILHEVHIQIH 629
               E  +   L     +V+ ++ 
Sbjct: 552 NQ-PETAEYQALNDQCVKVNEELR 574


>gi|237803224|ref|YP_002888418.1| DNA primase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274458|emb|CAX11253.1| DNA primase [Chlamydia trachomatis B/Jali20/OT]
          Length = 595

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 142/590 (24%), Positives = 245/590 (41%), Gaps = 38/590 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + ++ L   I I +++G+YV   R        DY ACCPFHDEKTPSF    ++G
Sbjct: 1   MYYTEESLETLKHSIDIVSVLGEYVHLKRSGA-----DYKACCPFHDEKTPSFIVYPTRG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+C+ C   GD ++FL    G SF E+V  LA    + L V   +   ++  +  L R+
Sbjct: 56  HYHCYGCGEHGDAINFLMKQQGYSFSEAVLFLAKKFHIDLVVRTKETSGQDS-KDSLRRI 114

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  FF + L +    +    YL +RG     I+ F++GYAP+ R  ++     +  S
Sbjct: 115 NREAERFFQYCLLHLPEGEEALAYLYKRGFSPDTIDRFQIGYAPEQRLFIQAMEE-RNIS 173

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238
            +++  AG L            F  R++FPI+ + G  I F  R   + G   KY+NSPE
Sbjct: 174 VKQLEWAGYLAKDWFL------FAQRIMFPIQDALGYTIGFSSRRFKEGGRGGKYINSPE 227

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TILF K + LY    +   + K  R          +ILVEG  D L +   G    +++ 
Sbjct: 228 TILFKKSRVLYGLQFSRKRIAKERR----------VILVEGQADCLQMIDFGFNCTLAAQ 277

Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           GT+ TE  +  L      +  L FDGD  G +A+ +  DL       G       L  G+
Sbjct: 278 GTSFTETHVHELVKLGVSKAYLLFDGDAAGEKASLRVGDLCQ---AAGITAIVCRLPSGQ 334

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF+   G     +L+      +  L   +  +    TP E+A +   +   +     
Sbjct: 335 DPDSFLMQRGPEELRELLDRGEDYLSFLVWHKIHSYEQFTPREKARVIEEVIQQVRCWGS 394

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG--K 475
               + Y + +   ++      ++  S      +   +    K PS    Q+S      K
Sbjct: 395 PITIHEYLRQLASLVKVPEPAVLSYLSSITSAAEDKGKKVSAKEPSSESKQTSTEGKISK 454

Query: 476 LSKKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                 + EA ++  L+        +     Q L+   +   E + ++    + + +++ 
Sbjct: 455 KISPRMILEADVIRCLLFAKPEDEFVPATVKQYLSPEEFHCAEYRAIFVMAMNHYNDRQT 514

Query: 532 F-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +E+   +       LL  + R++    +     ++    + + ++ 
Sbjct: 515 LPSMDEMMSLVVGTEAMTLL--VARRMNTELMRDIVVQSIQKLLDKHWRD 562


>gi|27904561|ref|NP_777687.1| DNA primase [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|31340263|sp|Q89B09|PRIM_BUCBP RecName: Full=DNA primase
 gi|27903958|gb|AAO26792.1| DNA primase [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 578

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 158/636 (24%), Positives = 284/636 (44%), Gaps = 71/636 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P++FI +L+    I ++I   +   +   N         CPFH EKTPSF  N  K FY
Sbjct: 5   IPKEFINELIFKTNIIDIINTRLPLKKVGKNYNTH-----CPFHQEKTPSFTVNFEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRL 120
           +CF C+  G+ + FL      +F+ES++ LA I G+ +P  +   EK    +  T+L  L
Sbjct: 60  FCFGCNTHGNIIDFLMNYEQLTFVESIKELAKIHGLTIPCKNINKEKLFNYEKITNLYLL 119

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            +   D +H ++     +  + Y+  RGID   I+ F LG++P + Y L +  +++ +++
Sbjct: 120 TKNIADLYHRNIFKT--EYAYQYILNRGIDKSMIKYFNLGFSPKNWYDLEKKNKKQCYNQ 177

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +++ E G+L       T YDRF+NR+IFPIR+  G ++ FGGRTL      KY+NSPET 
Sbjct: 178 KELQEIGILKTTILGYT-YDRFKNRIIFPIRNKNGNIVGFGGRTL-NNHIPKYINSPETQ 235

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +FHKG  LY  +  L    K             I++VEGY+DV++L Q  +   +S+LGT
Sbjct: 236 IFHKGFQLYGLYEMLKTNPKP----------KQILIVEGYVDVIALVQFKINYTISTLGT 285

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
            ++  Q++LL++ S  I+ C+DGD  G +AA++ +++ L H+  G  V F+ L   EDPD
Sbjct: 286 IISNEQIKLLFRTSNTIIFCYDGDVSGQKAAWRTLNISLSHIHDGKNVKFIFLPNNEDPD 345

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S IR  G   F+  I +S+     L +   +    N+  E++       + I  I  +  
Sbjct: 346 SIIRKEGHDNFKIRIKKSIDFSKFLLQTLFKKTDLNSISEKSHTSTIAISLIRKIPGKIT 405

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           + Y  Q +  ++  L    +  ++      K   +   +K                    
Sbjct: 406 QTYLFQTLSKKIGILDYHVLINNNINNINTKIYTKKPIKKTTI----------------- 448

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL-----WSFLFSDFVEQKYFLPE 535
                 ++  LI +P +       L      + +  K+     +  L    +        
Sbjct: 449 ----RIVIALLIQNPWLA------LTLPSLKHLQNYKIIGLSCFLDLVEKCISMPNSNTG 498

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN-IVDVRQGYQQALALYKRFRLLSRQ 594
           +I ++        + K L    +   +       +  +D        +   ++ +L+S++
Sbjct: 499 QILEKYRN---KNIFKHLANLAKWDHMIHNEKIKDFFLDSLTKICDIILEDRQNKLISQE 555

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
                    ++    + EK       L  ++ ++ +
Sbjct: 556 ---------RLNGLNKQEKY-----ELWSINKELAK 577


>gi|188996274|ref|YP_001930525.1| DNA primase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931341|gb|ACD65971.1| DNA primase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 539

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 137/570 (24%), Positives = 260/570 (45%), Gaps = 48/570 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + I+++     + ++I  Y+   +  +      Y A CPFH+E+TPSF  + +K 
Sbjct: 1   MAISPETIEEVQRVANVYDIISDYLSLKKTGSV-----YVALCPFHNERTPSFVVSPTKN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            + CF C + G+ + F+      SF +++ ++A   G+ +  +      KEK    L  L
Sbjct: 56  IFKCFGCGISGNAIKFVMEYEKISFSDAIIKIAQKYGITVKYIGND---KEKHLKGLYSL 112

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            +  TDF+ + LK +  +    YL +RGI    I  F++GY+P++     + +++   S 
Sbjct: 113 TKQITDFYKNQLKES--QIAREYLRKRGIQPQTIIDFEIGYSPENPERFNKFIQENNISI 170

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E + + GL+   ++    YD+F  R+IFPI+  +G ++ FGGR + +    KYLNSPET 
Sbjct: 171 EDLNKIGLISVHND--KIYDKFSGRIIFPIKDHKGNIVGFGGRAIDENRHPKYLNSPETQ 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++ K K LY  F     ++            S +++VEGYMD++SL Q G++NVV++LGT
Sbjct: 229 VYKKSKVLYGLFENSQIIK----------EKSQVVIVEGYMDLISLYQIGIKNVVATLGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT+  + LL K    +++ FD D+ G +AA +A +++L     G  V +   +  +DPD
Sbjct: 279 ALTKEHVNLLKKYVKEVIVMFDSDEAGKKAAIRAAEILLSE---GITVRYAYYTEAKDPD 335

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL---EIHLKNCINHIKD 417
              +  G  A +++I  +  ++  L ++  E  +     +  +      ++   + ++KD
Sbjct: 336 ELSK-KGLNAVKEIINNAEDIIFFLTRKLKEINNIEDKQQLMKYTAIYNYILMMLANVKD 394

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             LR  Y   +   L +   K  +E     +Y +K  R            +      KL+
Sbjct: 395 HGLRTSYVFHLSQILNKTPSKIESEIDDIKKYPEKEYRF-----------EMEEEANKLN 443

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            K S +E  L+  +  +P +L++  +    I +          ++         +    I
Sbjct: 444 LKLSYKEKVLIKYIYQNPEVLKD--EIFDKISFPEK-----IQYIIDLIKNNAEYEL-LI 495

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATT 567
              + +       +     + +        
Sbjct: 496 SDIIQDTKIQPSYESFQNILNEFVKKHEKE 525


>gi|297621010|ref|YP_003709147.1| DNA primase dnaG [Waddlia chondrophila WSU 86-1044]
 gi|297376311|gb|ADI38141.1| DNA primase dnaG [Waddlia chondrophila WSU 86-1044]
          Length = 595

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 148/632 (23%), Positives = 257/632 (40%), Gaps = 57/632 (9%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M  + ++ ++ L   + + +++  +++  R  +      Y   CPFHDEKTPSF     +
Sbjct: 1   MRLFTQESLERLRSRVDLIDVLSSHMELKRSGS-----AYKGLCPFHDEKTPSFIVQKGE 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
             Y+CF C   GD + FL   L   F ESV+ LA    V L  V+ K +     +  +  
Sbjct: 56  RHYHCFGCGEHGDAIKFLMTYLNLGFQESVESLAERFHVHLDCVEAKDQYTGPSKAAMKE 115

Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +E+A+ FFH   L         +YL  RG+    I+ F+LG AP     L + L +K  
Sbjct: 116 AMEIASCFFHFILLHTPEGHEALHYLYSRGVCLEFIKQFRLGLAPKVSGMLHKVLHEKKI 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
            ++ +   GLL   D+   + + F +R+ FPI    G VI F  R   +     KY+N+P
Sbjct: 176 GDDVMRGCGLLTRSDSG-KTREFFSDRITFPIYHPSGSVIGFSARKYREETFGGKYVNTP 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LF K + L+        + K  R          +I+VEG +D L L   G   VV++
Sbjct: 235 ETPLFKKSRVLFGLNHCRRRIVKERR----------VIIVEGQIDALRLIYEGFNFVVAA 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLC-FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            GTA        L  +   ++   FD DD G  AA K  DL     + G  V  V L  G
Sbjct: 285 QGTAFGIEHAAELAGMGVNLIYLAFDSDDAGREAAAKVGDL---FQMRGIEVRIVSLPGG 341

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD+F+   G  AF+KL+ +    ++ L    +   + +TP  +  L  H+   +   +
Sbjct: 342 TDPDTFLMEKGPEAFQKLMEKGQGYLEFLVGHLSRGIAIDTPAGKNHLVKHVSEQLRKWE 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D  + +   + +   LQ   +                     +  P+  + +S+ V  + 
Sbjct: 402 DPVMVHESLRKLARLLQVPEEYL---------------GVGQEYLPNTLIRKSASVGFEE 446

Query: 477 SKKPSLREAALLLTLIN--HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                + E   L  LI       ++     L      +   ++L+    +        LP
Sbjct: 447 VDPEKILELDFLRWLIVVGSQEFVEIAQFNLHPGDLRHEGCRRLYQTYLTSLHNH---LP 503

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            ++   +      EL+ +L  +           + N    ++ + Q++        + ++
Sbjct: 504 SDLLSLIQTEEDQELVAELMSR-----------KVNREKGKEQFAQSIQRILDRNWMEKR 552

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            EEI ++I   + +   E+   L+    E+  
Sbjct: 553 -EEIRRRI--HSGQLSDEEALSLLKTFDELKR 581


>gi|313681209|ref|YP_004058947.1| DNA primase [Sulfuricurvum kujiense DSM 16994]
 gi|313154069|gb|ADR32747.1| DNA primase [Sulfuricurvum kujiense DSM 16994]
          Length = 547

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 143/604 (23%), Positives = 246/604 (40%), Gaps = 63/604 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I+ L   + I +++G Y++  R  +      + A CPFHDEK+PSF  N S+  Y
Sbjct: 2   ITQDSIEALKARLDIVDIVGSYIELKRAGS-----SFKAPCPFHDEKSPSFVVNPSRQSY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C V GD + F+      ++ E++++LAA     L   D   +KK         L+E
Sbjct: 57  HCFGCGVHGDSIKFVMEFEKLNYPEAIEKLAASTNFTLHYTDNAQQKKRST------LLE 110

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
              D++   L+  R  +   YL ERGI + +IE F +GYAP S  +LR   ++K  + E 
Sbjct: 111 SLNDWYQKLLEQNRTAQE--YLHERGIYASSIERFGIGYAPTSPETLRFLEQRKLPTAEA 168

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           I +    I   +    + RF  R+ FPI S+ G ++ FGGRT+  G   KY+NS ++ +F
Sbjct: 169 IEQGA--IGRGDDGRLFARFIERITFPIHSTSGAIVGFGGRTI-TGHQAKYVNSSQSAIF 225

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           +K + LY +  A   + +             II+ EGY+DV+ L QAG  + V++LGTAL
Sbjct: 226 NKSRLLYAYHLAREAIYR----------RREIIVTEGYLDVVMLHQAGFTHAVATLGTAL 275

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P++ + +DGD  G  AA+KA  L       G     +L   G DP   
Sbjct: 276 TAEHLPLLRKGEPKVYVAYDGDKAGRAAAFKAAKL---LSTSGFDGGVILFEGGLDPADM 332

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I+         L+   +P ++ +            P  +          +  +    L+ 
Sbjct: 333 IKSGQIEQLNALLHRPIPFIEFVITEMISAYDLQDPKAKETALHENIAFLKTL-SPLLQE 391

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I  +L                                   ++++ +        +
Sbjct: 392 EYRPFIASKLGISPSLIQIGQ-----------------------KKNTVPQPINFSHHDI 428

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E + + TL+  P I       +           + +        +        +  R+ 
Sbjct: 429 WELSFIKTLLERPHIADTLLDFIDASLLQ--YHVQEFESALQGRNDDPRLSALMMDDRIR 486

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                E L+        A L +  +     ++++   Q    + +   L RQ  +  +++
Sbjct: 487 TFEGDEGLR--------AELITFLSAHYNRELKKVTTQNTVSFDQKSYLIRQYRDKIERL 538

Query: 603 AQVT 606
            +  
Sbjct: 539 KRGE 542


>gi|298529695|ref|ZP_07017098.1| DNA primase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511131|gb|EFI35034.1| DNA primase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 565

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 152/625 (24%), Positives = 261/625 (41%), Gaps = 64/625 (10%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M+      + ++   + + +++G+YV           G     CPFH E   SF     +
Sbjct: 1   MSFIDPREVAEIKSRLSLEDIVGRYVQLKTVG-----GRLMGPCPFHQETRASFSVTPDQ 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL-I 118
           GFYYCF C   GD + F   + G  F E+V +LAA AGV L             +  +  
Sbjct: 56  GFYYCFGCQASGDIIEFFKNINGLDFNEAVTQLAAEAGVKLARQGGSPGPASMGRASVCR 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +   +  FF   L+ +  ++   YL++R I     + F LG++PD   +L+  L  +GF
Sbjct: 116 EVNSWSNSFFGQHLQGSNGQKARLYLEKRQISQETAKAFGLGWSPDGWNNLKSFLESRGF 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           + E  +EAG+L         YDRFR RLIFPI +  G V+AFGGR +   +  KYLNS E
Sbjct: 176 TPEDGVEAGVLSRN-ERGRIYDRFRARLIFPIIALSGAVVAFGGRVM-GDDEPKYLNSSE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + ++ KG++LY  + A  ++ +S R          ++L EGY+DV++L Q G +N    L
Sbjct: 234 SPIYTKGEHLYGLYQARTHITRSSR----------VLLTEGYLDVMALHQYGFENSCGIL 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT+ Q++ +  L+  +VL FDGD PG  AA K+ ++    L  G     ++L  GED
Sbjct: 284 GTALTKAQVKRMAGLAREVVLIFDGDAPGQSAALKSAEM---ILQAGLTCRVLILPEGED 340

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
             S +   G+   E L+ ++   +D   K  + N+S        E    ++N I H KD 
Sbjct: 341 AHSLLVARGRQGLEDLLQKTTDGLDFCLKMLSTNKSPG------ETMKWVENFITHFKDL 394

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R YY   +   L    ++   + +   +    + R   Q+G                 
Sbjct: 395 SWRSYYIPRVAHVLGLTEKELREKFTPAAQKTPGDTRVWSQQGKG--------------- 439

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
               R+  LL   +  P        +   +   +   ++ W  L     +          
Sbjct: 440 -AEQRDRELLTFAVCFPEDRTRLQNKNLGLVLTSQWARQFWDKLRVMHQDD--------- 489

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                      L  L+       + S    A +   +      +  +    +       +
Sbjct: 490 -----------LSALNEDESAFFVQSKMQRAQLEKEKTRILAQIEEFIDRCMTRMSTRNL 538

Query: 599 EKQIAQVTAKGEAEKTAILISILHE 623
           +  +++     + ++   ++ +L +
Sbjct: 539 KTALSRAQQSQDQDEVRRILQLLQK 563


>gi|15605527|ref|NP_220313.1| DNA primase [Chlamydia trachomatis D/UW-3/CX]
 gi|237805145|ref|YP_002889299.1| DNA primase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311629|ref|ZP_05354199.1| DNA primase [Chlamydia trachomatis 6276]
 gi|255317930|ref|ZP_05359176.1| DNA primase [Chlamydia trachomatis 6276s]
 gi|9910816|sp|O84799|PRIM_CHLTR RecName: Full=DNA primase
 gi|3329259|gb|AAC68389.1| DNA Primase [Chlamydia trachomatis D/UW-3/CX]
 gi|231273445|emb|CAX10360.1| DNA primase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296436343|gb|ADH18517.1| DNA primase [Chlamydia trachomatis G/9768]
 gi|296437274|gb|ADH19444.1| DNA primase [Chlamydia trachomatis G/11222]
 gi|296438202|gb|ADH20363.1| DNA primase [Chlamydia trachomatis G/11074]
 gi|297140703|gb|ADH97461.1| DNA primase [Chlamydia trachomatis G/9301]
 gi|297748921|gb|ADI51467.1| DNA primase [Chlamydia trachomatis D-EC]
 gi|297749801|gb|ADI52479.1| DNA primase [Chlamydia trachomatis D-LC]
          Length = 595

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 143/590 (24%), Positives = 245/590 (41%), Gaps = 38/590 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + ++ L   I I +++G+YV   R        DY ACCPFHDEKTPSF    ++G
Sbjct: 1   MYYTEESLETLKHSIDIVSVLGEYVHLKRSGA-----DYKACCPFHDEKTPSFIVYPTRG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+C+ C   GD ++FL    G SF E+V  LA    V L V   +   ++  +  L R+
Sbjct: 56  HYHCYGCGEHGDAINFLMKQQGYSFSEAVLFLAKKFHVDLVVRTKETSGQDS-KDSLRRI 114

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  FF + L +    +    YL +RG     I+ F++GYAP+ R  ++     +  S
Sbjct: 115 NREAERFFQYCLLHLPEGEEALAYLYKRGFSPDTIDRFQIGYAPEQRLFIQAMEE-RNIS 173

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238
            +++  AG L            F  R++FPI+ + G  I F  R   + G   KY+NSPE
Sbjct: 174 VKQLEWAGYLAKDWFL------FAQRIMFPIQDALGYTIGFSSRRFKEGGRGGKYINSPE 227

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TILF K + LY    +   + K  R          +ILVEG  D L +   G    +++ 
Sbjct: 228 TILFKKSRVLYGLQFSRKRIAKERR----------VILVEGQADCLQMIDFGFNCTLAAQ 277

Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           GT+ TE  +  L      +  L FDGD  G +A+ +  DL       G       L  G+
Sbjct: 278 GTSFTETHVHELVKLGVSKAYLLFDGDAAGEKASLRVGDLCQ---AAGITAIVCRLPSGQ 334

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF+   G     +L+      +  L   +  +    TP E+A +   +   +     
Sbjct: 335 DPDSFLMQRGPEELRELLDRGEDYLSFLVWHKIHSYEQFTPREKARVIEEVIQQVRCWGS 394

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG--K 475
               + Y + +   ++      ++  S      +   +    K PS    Q+S      K
Sbjct: 395 PITIHEYLRQLASLVKVPEPAVLSYLSSITSAAEDKGKKVSAKEPSSESKQTSTEGKISK 454

Query: 476 LSKKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                 + EA ++  L+        +     Q L+   +   E + ++    + + +++ 
Sbjct: 455 KISPRMILEADVIRCLLFAKPEDEFVPATVKQYLSPEEFHCAEYRAIFVMAMNHYNDRQT 514

Query: 532 F-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +E+   +       LL  + R++    +     ++    + + ++ 
Sbjct: 515 LPSMDEMMSLVVGTEAMTLL--VARRMNTELMRDIVVQSIQKLLDKHWRD 562


>gi|325107208|ref|YP_004268276.1| DNA primase [Planctomyces brasiliensis DSM 5305]
 gi|324967476|gb|ADY58254.1| DNA primase [Planctomyces brasiliensis DSM 5305]
          Length = 652

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 147/645 (22%), Positives = 259/645 (40%), Gaps = 48/645 (7%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           +F + +     I  L+G+      R       +Y A CPFHD+ +PS   N  +  Y C+
Sbjct: 8   EFKEQVRAQTNIVALVGETRAVTPR---NGGREYVALCPFHDDHSPSLTINPERQTYRCW 64

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
            C   GD  S+L  L G  F +++++LA  A + LP V P   K+   + + +  +E A 
Sbjct: 65  VCDEGGDCFSYLMKLEGLDFRQAMEQLAQRANLELPQVGPPNGKRGAGRNEQLAALEWAC 124

Query: 126 DFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
           + FHH  L +   ++   YL +RG        F++G+ P     L    R + F  + + 
Sbjct: 125 EQFHHCLLNHPEAEKAREYLFDRGFCEEIWADFRMGFHPGPWEWLMTKARGR-FKLDVLE 183

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV---KYLNSPETIL 241
            A L+    + +   + FRNR+ FPI + RGQVIAFGGR L   +     KY NS E+ L
Sbjct: 184 AARLISPRSSGSGYIEHFRNRITFPIVNERGQVIAFGGRVLPGSDDEKFGKYQNSRESPL 243

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K + LY    A   +++  R          +I+VEGY D ++L Q G+ N V++LGTA
Sbjct: 244 FSKSRQLYGIDHAKEAMREQGR----------VIVVEGYTDCIALHQQGIANSVATLGTA 293

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE  + L+ +    ++L FDGDD G  AA +A+ ++L H      +    +  G DP  
Sbjct: 294 LTEQHVDLIRRFCQEVLLVFDGDDAGQNAAQRALPVLLGH---DIELKLFAIPEGMDPPE 350

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK--DQK 419
           F+  YG   F++L+  +    +   +R  +    ++   R  +   +   ++        
Sbjct: 351 FLEKYGLQKFQELLQNACDAWEFKLQRLEQEFDRDSSFGRDRIVEEMLGLLSIAPAISGT 410

Query: 420 LRYYY-SQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            R  Y    + +R  L+   ++ + +     R        +    P+           + 
Sbjct: 411 TRENYLLNHLANRIGLRGTQEQILHDRLRKLRRNGAPVAKQSPGTPATPPEGVVSAPPEE 470

Query: 477 S-----------------KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
           +                  + +  E  LL  +I  P  L    Q           L+ L 
Sbjct: 471 NRDLNFGEEVRRLLRDQLDRLTALERDLLEIIITMPESLTLIRQRGLLETIQTRSLRLLM 530

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV----DVR 575
           +        Q++   E +   + +    +L+  L  +     +     E   +       
Sbjct: 531 TECDRLSQRQEFVSYEALLTAIDDLELKKLILGLADRSDQRRIAEKLQETTALPEGTQCP 590

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGEAEKTAILIS 619
              +Q +   +     SR ++     +A         ++   L+ 
Sbjct: 591 IYLRQVIERLEWEHKESRHRKSARLVVAPAQEPTSAEDRMQQLLQ 635


>gi|253581344|ref|ZP_04858570.1| DNA primase [Fusobacterium varium ATCC 27725]
 gi|251836708|gb|EES65242.1| DNA primase [Fusobacterium varium ATCC 27725]
          Length = 591

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 150/633 (23%), Positives = 261/633 (41%), Gaps = 54/633 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I  L+  + I  ++G++V+  +  +      Y   CPFH + +PSF  + SK 
Sbjct: 1   MRYRSEDIDMLIESLKIEEVVGEFVELKKSGS-----SYKGLCPFHQDTSPSFMVSPSKN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              CF C   G+ + F S     SFIE+V+ L+   G+P+        K E+      ++
Sbjct: 56  ICKCFVCGAGGNPVKFYSEYKKISFIEAVEELSKKYGIPI-KGISSNRKNEESYDKYYKI 114

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E A  FF   + +   +    YL  R ++   I+  +LG+AP+    L ++L  KG+  
Sbjct: 115 MEDAHSFFKEYIFSNNGREAMEYLVARKLNPKIIKDNELGFAPNKWNELNDYLISKGYEL 174

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
           + II  GL+ +  +    YD FRNR++FPI S  G+VIAFGGRTL   +   KY+NSP+T
Sbjct: 175 KDIIALGLVKE--SENGQYDIFRNRIVFPIYSPTGKVIAFGGRTLENNKEVPKYINSPDT 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGKNLY              +       ++ +L+EGYMDVLS    G    ++ LG
Sbjct: 233 PIFKKGKNLYGL-----------ERGSMIKKKNYAMLMEGYMDVLSGYLYGFDVALAPLG 281

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q +LL + +  I+L FD D  G  A  +A  ++      G  +  ++L   +DP
Sbjct: 282 TALTEEQGKLLKRYTSNIILSFDSDAAGQAATERAGMILKAL---GFNIRVLILEGAKDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++ YGK +F K +  S+ + D L+K  ++   F+    +       K     +    
Sbjct: 339 DEYLKLYGKESFLKCVKNSVEIFDFLFKYYSKEYDFSNMMSKQNFINRFKEFFQSVDTDL 398

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y   +  +L               R   +           +       +     + 
Sbjct: 399 EKSLYLDKLSKQLNIEKDILKETLIDKNRKKSR-----------KPEEVLENISISREET 447

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            S  E   L  ++      +    +           +K++ +      E       +I +
Sbjct: 448 ASKLEELTLGLILARNEYFKYFKDKNIKGSLT----KKVFQYFKEREEE------TDIIR 497

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE-- 597
            L +    EL K    +       +    +    + +  ++    + R  L  +QK    
Sbjct: 498 ELKDSV--ELTKAETEEWEIVICMAINDFSTEERINKLLEEIFISWFRIELKEKQKNREN 555

Query: 598 ------IEKQIAQVTAKGEAEKTAILISILHEV 624
                 ++    ++ A     K   +     E+
Sbjct: 556 ISKTIGLKSIELKLNAADGFSKILDIYKEYEEI 588


>gi|325284165|ref|YP_004256706.1| DNA primase [Deinococcus proteolyticus MRP]
 gi|324315974|gb|ADY27089.1| DNA primase [Deinococcus proteolyticus MRP]
          Length = 581

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 150/624 (24%), Positives = 257/624 (41%), Gaps = 54/624 (8%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
              + I+++IG+YV           G     CPFH EK+PSF  +  +G+YYCF C   G
Sbjct: 2   RDRLNIADVIGEYVSLTPAGK----GRLKGLCPFHKEKSPSFQVDTEQGYYYCFGCKAGG 57

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHS 131
           D   F+      SF +++++LA  AGV L     +   ++     L  + + A  +F   
Sbjct: 58  DVFKFVQETENLSFGDALRKLAERAGVQLEQKYGERVSRD-----LYDVNDFALQYFRSH 112

Query: 132 LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191
           L+         Y   RG+    +E F+LG+APDS   L +  R  G SE ++++AGLL  
Sbjct: 113 LR----GDALAYFQGRGLTPQVMEDFELGFAPDSWDGLLQQARAHGLSERQLLDAGLLTQ 168

Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNF 251
                  YDRFR R++FPIR   G+++ FGGR L      KYLN+PET  F KG+ LY  
Sbjct: 169 N-EQGRVYDRFRGRVMFPIRDHLGRLVGFGGRVL-DDSKPKYLNTPETDAFKKGELLYGL 226

Query: 252 FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL- 310
             A + L+              +I+ EGYMDV++L Q G    V+SLGTALT     LL 
Sbjct: 227 HRARSVLK----------DGQPLIVAEGYMDVIALQQHGFAGAVASLGTALTAEHAALLE 276

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
              +  +VL FD D+ GL+A    +D  +       +V    +  G+DP   +R     +
Sbjct: 277 RLGARELVLMFDRDEAGLKATLSGLDQTVGAR---FQVRATSVPSGKDPADALREGDVQS 333

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
            ++ +   L  ++       +    ++ D + ++ + L   + ++ D            D
Sbjct: 334 IQRALQGGLNEIEYRVHAARDRYGLDSRDGKRKILMELLPRMQNL-DP------LDEGAD 386

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           +++    + +         W  +   R     +     S     +       RE ALL  
Sbjct: 387 QMRAKVCELLDIRPQALLDWIGSKAKRRTLTDTHLAGMS-----QGGGHEEDRELALLRQ 441

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           L+  P +L +    L    + N  ++K+          Q     ++I      +     L
Sbjct: 442 LLVDPRLLAKLDGTLG---WRNELVRKV------MLAAQGAQSTDDIMSVFRGQPEEGQL 492

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGY----QQALALYKRFRLLSRQKEEIEKQIAQVT 606
            ++  + R +G  S          +Q Y       + +      L  + + ++ Q+    
Sbjct: 493 IRMMFETRQSGNISRAGHEEYEAKQQTYAAAAVDDIQVGLSIESLRGEVKLLKSQLLDAP 552

Query: 607 AKGEAEKTAILISILHEVHIQIHQ 630
              +A+    +  +   +  +   
Sbjct: 553 PTQQADILRQITELQRAIEAEKRA 576


>gi|255507409|ref|ZP_05383048.1| DNA primase [Chlamydia trachomatis D(s)2923]
 gi|289525838|emb|CBJ15319.1| DNA primase [Chlamydia trachomatis Sweden2]
 gi|296435418|gb|ADH17596.1| DNA primase [Chlamydia trachomatis E/150]
 gi|296439135|gb|ADH21288.1| DNA primase [Chlamydia trachomatis E/11023]
          Length = 595

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 143/590 (24%), Positives = 245/590 (41%), Gaps = 38/590 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + ++ L   I I +++G+YV   R        DY ACCPFHDEKTPSF    ++G
Sbjct: 1   MYYTEESLETLKHSIDIVSILGEYVHLKRSGA-----DYKACCPFHDEKTPSFIVYPTRG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+C+ C   GD ++FL    G SF E+V  LA    V L V   +   ++  +  L R+
Sbjct: 56  HYHCYGCGEHGDAINFLMKQQGYSFSEAVLFLAKKFHVDLVVRTKETSGQDS-KDSLRRI 114

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  FF + L +    +    YL +RG     I+ F++GYAP+ R  ++     +  S
Sbjct: 115 NREAERFFQYCLLHLPEGEEALAYLYKRGFSPDTIDRFQIGYAPEQRLFIQAMEE-RNIS 173

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238
            +++  AG L            F  R++FPI+ + G  I F  R   + G   KY+NSPE
Sbjct: 174 VKQLEWAGYLAKDWFL------FAQRIMFPIQDALGYTIGFSSRRFKEGGRGGKYINSPE 227

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TILF K + LY    +   + K  R          +ILVEG  D L +   G    +++ 
Sbjct: 228 TILFKKSRVLYGLQFSRKRIAKERR----------VILVEGQADCLQMIDFGFNCTLAAQ 277

Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           GT+ TE  +  L      +  L FDGD  G +A+ +  DL       G       L  G+
Sbjct: 278 GTSFTETHVHELVKLGVSKAYLLFDGDAAGEKASLRVGDLCQ---AAGITAIVCRLPSGQ 334

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF+   G     +L+      +  L   +  +    TP E+A +   +   +     
Sbjct: 335 DPDSFLMQRGPEELRELLDRGEDYLSFLVWHKIHSYEQFTPREKARVIEEVIQQVRCWGS 394

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG--K 475
               + Y + +   ++      ++  S      +   +    K PS    Q+S      K
Sbjct: 395 PITIHEYLRQLASLVKVPEPAVLSYLSSITSATEDKGKKVSAKEPSSESEQTSTEGKISK 454

Query: 476 LSKKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                 + EA ++  L+        +     Q L+   +   E + ++    + + +++ 
Sbjct: 455 KISPRMILEADVIRCLLFAKPEDEFVPATVKQYLSPEEFHCAEYRAIFVMAMNHYNDRQT 514

Query: 532 F-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +E+   +       LL  + R++    +     ++    + + ++ 
Sbjct: 515 LPSTDEMMSLVVGTEAMTLL--VARRMNTELMRDIVVQSIQKLLDKHWRD 562


>gi|315637634|ref|ZP_07892840.1| DNA primase [Arcobacter butzleri JV22]
 gi|315478088|gb|EFU68815.1| DNA primase [Arcobacter butzleri JV22]
          Length = 544

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 134/595 (22%), Positives = 251/595 (42%), Gaps = 60/595 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L  H+ + ++I Q+++  +   N     + ACCPFH E TPSF  + +K  Y
Sbjct: 2   IKKESIENLKNHLDVVDVISQFIEIKKAGAN-----FKACCPFHGENTPSFVISPAKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C V GD + F+      S+ E++++LA++    L       +K++      I+++E
Sbjct: 57  HCFGCGVGGDSIKFVMEYEKLSYPETIEKLASMYNFTLDYDSSTEKKQD------IKILE 110

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               F+     N   +++  Y+ +RGI   +++ F++GYAP S  ++      K      
Sbjct: 111 DVNKFYQKLYINN--EQVKNYIKDRGISDFSVQKFEVGYAPASIDTINFL---KSNHFNL 165

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                L +    +   Y RF  R+ FPI S  G+++ FGGRT+  G + KY+NSP+T LF
Sbjct: 166 SEAIDLGVIDTGANGLYSRFIERITFPIYSINGKLVGFGGRTI-SGHNAKYVNSPQTKLF 224

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           +K K LY +  A   + K          +  II+ EGY+DV+ L QAG    V++LGTAL
Sbjct: 225 NKSKLLYGYNLAKEKIYK----------TKQIIICEGYLDVIMLHQAGFDIAVATLGTAL 274

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL +  P+++L +DGD  GL AA+KA  ++      G     V+ S  +DP   
Sbjct: 275 TAEHLPLLRRGEPKVILAYDGDKAGLAAAFKASVMLSQSQFEG---GVVIFSDNQDPADM 331

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++        K+ +     +             N P ++ +      + +  +     + 
Sbjct: 332 VKAGKIEELNKIFLNPQSFIPYAIDYIISKYEINDPIQKQKALTEANDYLKSL-SLLNQD 390

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + I  +L                  ++  +                       K  +
Sbjct: 391 EYKRYIAQKLN-----IRENLVKISSDKQRTNQV-------------------SLSKIDI 426

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++ +++  P  L      +    +     +  +  L +D           ++++L 
Sbjct: 427 AELCIIKSILEKPQRLDSVLDIVDVSMF--EYHKTEFELLLNDIK-DSSLNAIVLNEKLE 483

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                 L ++L   V     ++    A   D    ++Q   + ++ +    Q ++
Sbjct: 484 NYDDERLNQEL--LVLLHKFYTNKLMAISYDKELEFKQKANMIRKIKDNIYQLKQ 536


>gi|262341114|ref|YP_003283969.1| DNA primase [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272451|gb|ACY40359.1| DNA primase [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 613

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 153/647 (23%), Positives = 283/647 (43%), Gaps = 56/647 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ IK +L    I ++IG +V+  +   N     Y    PF +EKTPSF  + +K  +
Sbjct: 2   ICKETIKKILSVSCIEDVIGDFVELKKSGLN-----YRGLSPFSNEKTPSFIVSPTKKIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
             FS    G+ ++FL      +++ES++ LA    + +   +   +   +    L  + +
Sbjct: 57  KDFSSGKGGNIITFLMEHEHFTYVESLRYLAKRYHIKIQYTEEFSKIDHEEYEKLYFIQD 116

Query: 123 VATDFFHHSLKNARDKR---LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            A  FF + L   ++ +    +Y + +RG +   I  F+LGYAP S     +   +KGF 
Sbjct: 117 YAKRFFINQLFCTKEGQKNGFNYLIQKRGFNMKIIHKFELGYAPLSWSFFTKKALEKGFK 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237
            + + ++G  I    S   +D FR R++FPI +  G+VI FGGR +    S   KY+NS 
Sbjct: 177 IQDLKKSGFTIYRKYSNNFFDCFRKRVMFPIHNLSGRVIGFGGRNIDSSSSYSTKYINSS 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ +F K K LY  F A   + K               LVEGY DVLSL Q+G++NVVSS
Sbjct: 237 ESDIFQKSKILYGLFQAKKNILK----------EDLCYLVEGYTDVLSLHQSGIKNVVSS 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            G +LT  Q+ L+ K +  IVL +DGD  G++A+ + I++    L  G  +  + +S GE
Sbjct: 287 SGISLTVDQILLIKKFTKNIVLFYDGDRSGIKASLRGINM---ILEQGINLRILFISNGE 343

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDS  + Y  +  +  + ++        ++       + P +++   +++ N I+ I +
Sbjct: 344 DPDSLSKKYSISQLKDFLAKNSYNFISFKQKIYGKFHQDDPIKKSFFVLNILNSISKISN 403

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              +  Y Q     LQ   +  I E     +   +  R                   + +
Sbjct: 404 VLQKELYLQEASKMLQIRQKILINELERINKKNGQKLRTVQAIQAGGN--------NQNT 455

Query: 478 KKPSLREAALLLTLINHPAILQE-------QYQELA------DIRYDNNELQKLWSFLFS 524
                 E  L+  ++NH   + +         +E+       ++R+  N+ Q+++  +  
Sbjct: 456 NTLLFIEKELIQLILNHGNKIIKKEKCNTTVLEEILYAFKYWNLRFSLNKNQEIFDKICL 515

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
              +  ++       +L    F +  +                 ++  D    Y   + L
Sbjct: 516 QNKKIGHY-------KLNNTEFSDK-ENPKFYSLSKWDKKGIKVSSFDDHIDQYITDILL 567

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEA-EKTAILISILHEVHIQIHQ 630
             R   +S+  +   K+I  +T   +  +K   L ++ +E+H ++H+
Sbjct: 568 RYRVLYISKLIK---KEIIHITKDDDRLKKIMDLTNVKNEIHKKLHR 611


>gi|237755495|ref|ZP_04584117.1| DNA primase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692359|gb|EEP61345.1| DNA primase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 536

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 132/565 (23%), Positives = 243/565 (43%), Gaps = 48/565 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + I ++     + ++I  Y+   +  +      Y A CPFH+E+TPSF  + +K 
Sbjct: 1   MAISPETIDEVQRVANVYDIISDYLSLKKTGSV-----YVALCPFHNERTPSFVVSPAKN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            + CF C + G+ + F+      SF E+V ++A   G+ +  +      K+K    L  L
Sbjct: 56  IFKCFGCGISGNAIKFVMEYEKISFSEAVIKIAQKYGITVKYIGND---KDKHLKGLYSL 112

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
               TDF+ + LK +  +    YL +RGI    I  F++GY+P++     + +++   S 
Sbjct: 113 TRQITDFYKNQLKES--QIAREYLKKRGILPQTIIDFEIGYSPENPERFNKFIQENNISI 170

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E + + GL+   ++    YD+F  R+IF I+  +G ++ FGGR L +    KYLNSPET 
Sbjct: 171 EDLNKIGLISVHND--KIYDKFSGRIIFTIKDHKGNIVGFGGRALDENRHPKYLNSPETQ 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++ K K LY  F     ++            S +I+VEGYMD++SL Q G++NVV++LGT
Sbjct: 229 VYKKSKVLYGLFENSQIIK----------EKSQVIIVEGYMDLISLYQIGIKNVVATLGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALT+    LL K     ++ FD D+ G +A  +A +++L     G  V +   +  +DPD
Sbjct: 279 ALTKEHANLLKKYVKEAIVMFDSDEAGKKAVIRAAEILLSE---GITVRYAYYTEAKDPD 335

Query: 361 SFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
              +              + +  +    K        +       +  ++   + ++ D 
Sbjct: 336 ELSKKGLNVVKEIINNAEDIIFFLTQKLKEINNLEDKHQLMRYKTIYNYILMILANVNDH 395

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L+  Y   +   L +   K  +E     +Y            P +   +      KL+ 
Sbjct: 396 GLKASYVNYLSQMLDKTPSKIESEIDDIKKY------------PEKEYREMEEEADKLNL 443

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL--PEE 536
           K S +E   +  +  +P +L++  +    I +          ++         +     +
Sbjct: 444 KLSYKEKVFIKYIYQNPEVLKD--EIFDKISFPEK-----IQYIIDLIKNNAEYELLISD 496

Query: 537 IHQRLCERGFGELLKQLDRQVRDAG 561
           I Q    +   E  + +  +     
Sbjct: 497 IIQNTKIQPSYESFQDILNEFVKKH 521


>gi|157737845|ref|YP_001490529.1| DNA primase [Arcobacter butzleri RM4018]
 gi|157699699|gb|ABV67859.1| DNA primase [Arcobacter butzleri RM4018]
          Length = 544

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 139/604 (23%), Positives = 256/604 (42%), Gaps = 71/604 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L  H+ + ++I Q+++  +   N     + ACCPFH E TPSF  + +K  Y
Sbjct: 2   IKKESIENLKNHLDVVDVISQFIEIKKAGAN-----FKACCPFHGENTPSFVISPAKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C V GD + F+      S+ E++++LA++    L       +K++      I+++E
Sbjct: 57  HCFGCGVGGDSIKFVMEYEKLSYPETIEKLASMYNFTLDYDSSTEKKQD------IKILE 110

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               F+     N   +++  Y+ +RGI   +++ F++GYAP S  ++      K      
Sbjct: 111 DVNKFYQKLYINN--EQVKNYIKDRGISDFSVQKFEVGYAPASIDTINFL---KSNHFNL 165

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                L +    +   Y RF  R+ FPI S  G+++ FGGRT+  G + KY+NSP+T LF
Sbjct: 166 SEAIDLGVIDTGANGLYSRFIERITFPIYSINGKLVGFGGRTI-SGHNAKYVNSPQTKLF 224

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           +K K LY +  A   + K          +  II+ EGY+DV+ L QAG    V++LGTAL
Sbjct: 225 NKSKLLYGYNLAKEKIYK----------TKQIIICEGYLDVIMLHQAGFDIAVATLGTAL 274

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL +  P+++L +DGD  GL AA+KA  ++      G     V+ S  +DP   
Sbjct: 275 TAEHLPLLRRGEPKVILAYDGDKAGLAAAFKASVMLSQSQFEG---GVVIFSDNQDPADM 331

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++        K+ +     +             N P ++ +      + +  +     + 
Sbjct: 332 VKAGKIEELNKIFLNPQSFIPYAIDYIILKYEINDPIQKQKALTEANDYLKSL-SLLNQD 390

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + I  +L                  ++  +                       K  +
Sbjct: 391 EYKRYIAQKLN-----IRENLVKISSDKQRTNQV-------------------SLSKIDI 426

Query: 483 REAALLLTLINHPAILQEQYQ--ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            E  ++ +++  P  L       +++   Y   E + L + +    +       E++   
Sbjct: 427 AELCIIKSILEKPERLDSVLDIVDISMFEYHKTEFELLLNDIKDSSLNAIVLN-EKLENY 485

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             ER   ELL  L +   +  +               Y + L   ++  ++ R+ ++   
Sbjct: 486 DDERLNQELLVLLHKFYTNKLMAI------------SYDKELDFKQKANMI-RKIKDNIY 532

Query: 601 QIAQ 604
           Q+ Q
Sbjct: 533 QLKQ 536


>gi|255349192|ref|ZP_05381199.1| DNA primase [Chlamydia trachomatis 70]
 gi|255503729|ref|ZP_05382119.1| DNA primase [Chlamydia trachomatis 70s]
          Length = 595

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 143/590 (24%), Positives = 245/590 (41%), Gaps = 38/590 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + ++ L   I I +++G+YV   R        DY ACCPFHDEKTPSF    ++G
Sbjct: 1   MYYTEESLETLKHSIDIVSILGEYVHLKRSGA-----DYKACCPFHDEKTPSFIVYPTRG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+C+ C   GD ++FL    G SF E+V  LA    V L V   +   ++  +  L R+
Sbjct: 56  HYHCYGCGEHGDAINFLMKQQGYSFSEAVLFLAKKFHVDLVVRTKETSGQDS-KDSLRRI 114

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  FF + L +    +    YL +RG     I+ F++GYAP+ R  ++     +  S
Sbjct: 115 NREAERFFQYCLLHLPEGEEALAYLYKRGFSPDTIDRFQIGYAPEQRLFIQAMEE-RNIS 173

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238
            +++  AG L            F  R++FPI+ + G  I F  R   + G   KY+NSPE
Sbjct: 174 VKQLEWAGYLAKDWFL------FAQRIMFPIQDALGYTIGFSSRRFKEGGRGGKYINSPE 227

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TILF K + LY    +   + K  R          +ILVEG  D L +   G    +++ 
Sbjct: 228 TILFKKSRVLYGLQFSRKRIAKERR----------VILVEGQADCLQMIDFGFNCTLAAQ 277

Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           GT+ TE  +  L      +  L FDGD  G +A+ +  DL       G       L  G+
Sbjct: 278 GTSFTETHVHELVKLGVSKAYLLFDGDAAGEKASLRVGDLCQ---AAGITAIVCRLPYGQ 334

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF+   G     +L+      +  L   +  +    TP E+A +   +   +     
Sbjct: 335 DPDSFLMQRGPEELRELLDRGEDYLSFLVWHKIHSYEQFTPREKARVIEEVIQQVRCWGS 394

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG--K 475
               + Y + +   ++      ++  S      +   +    K PS    Q+S      K
Sbjct: 395 PITIHEYLRQLASLVKVPEPAVLSYLSSITSATEDKGKKVSAKEPSSESEQTSTEGKISK 454

Query: 476 LSKKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                 + EA ++  L+        +     Q L+   +   E + ++    + + +++ 
Sbjct: 455 KISPRMILEADVIRCLLFAKPEDEFVPATVKQYLSPEEFHCAEYRAIFVMAMNHYNDRQT 514

Query: 532 F-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +E+   +       LL  + R++    +     ++    + + ++ 
Sbjct: 515 LPSTDEMMSLVVGTEAMTLL--VARRMNTELMRDIVVQSIQKLLDKHWRD 562


>gi|319760204|ref|YP_004124142.1| DNA primase [Candidatus Blochmannia vafer str. BVAF]
 gi|318038918|gb|ADV33468.1| DNA primase [Candidatus Blochmannia vafer str. BVAF]
          Length = 592

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 151/599 (25%), Positives = 287/599 (47%), Gaps = 41/599 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P+  I+ L+    I +LI Q +   ++ +N     + ACCPFH EK PSF  N  K F
Sbjct: 4   RIPKTLIETLISRTNIVDLINQRIPLKKKGSN-----FIACCPFHSEKYPSFTVNFKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE-KIQTDLIRL 120
           YYCFSC   G+ ++FL      +FIE +++L+ I G+ +          +   + +L + 
Sbjct: 59  YYCFSCGAHGNIINFLMNYDQYTFIECIKKLSTIHGISIKNFFYHNTTSQISHENNLYKF 118

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +   ++++ ++L N +    H YL  RG+ +++I  F +G+AP    ++ ++L    ++ 
Sbjct: 119 MSDVSNYYQNNLINKKYAYAHKYLQNRGLTTNSIANFNIGFAPMGWNNIAQNLNLNTYNS 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239
           + I ++G+ ++       YDRFR R+IFP+++  G++I FGGRT+    +  KYLNSP+T
Sbjct: 179 KLITQSGIYVENGKKNK-YDRFRERIIFPMKNQEGKIIGFGGRTIQHNPKQPKYLNSPDT 237

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K + LY F+              +  +  +I+LVEGYMDV+ L Q G+  VVS+LG
Sbjct: 238 TIFKKNQYLYGFYETCK----------KHKNIPYILLVEGYMDVIILTQFGINYVVSTLG 287

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+++ Y +RL++ ++ +I+ C+DGD+ G +AA++ ++ VL +L     ++F+ L   EDP
Sbjct: 288 TSMSVYHIRLIYSVTNQIICCYDGDNAGKKAAWRTLNTVLPYLTDNKEISFMFLPNQEDP 347

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D+ IR  GK +F K I ++  L + L++  ++  + +T + R +L   +   IN I  Q 
Sbjct: 348 DTLIRKIGKDSFLKQISKAQSLSNFLFETLSKKINLHTLEGRVKLSSLILPMINQIPGQI 407

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           L+    Q +   +  L    + +                     ++  ++  +       
Sbjct: 408 LQLCLQQKLSKIIGILDDSKLQQLL-------------------KKPKKNIPLTQYKHNI 448

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  L+  LI +P + +            +N ++ ++  L         F  E++ +
Sbjct: 449 TYNIEHILIGLLIQNPKLAKLVPTIQGLETLKHNNIK-IFINLVKLCKFYPNFTTEQLLE 507

Query: 540 RL--CERGFGELLKQLDRQVRDAGLWSAT-TEANIVDVRQGYQQALALYKRFRLLSRQK 595
                +         L +      +          +D        +   ++  L++R++
Sbjct: 508 YFYNKKTTNRHYFIILKKLAYWKHIIKDDMIIITFIDTLTKLYNLILEQQQNMLITRER 566


>gi|166154135|ref|YP_001654253.1| DNA primase [Chlamydia trachomatis 434/Bu]
 gi|166155010|ref|YP_001653265.1| DNA primase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335375|ref|ZP_07223619.1| DNA primase [Chlamydia trachomatis L2tet1]
 gi|165930123|emb|CAP03607.1| DNA primase [Chlamydia trachomatis 434/Bu]
 gi|165930998|emb|CAP06561.1| DNA primase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 595

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 143/590 (24%), Positives = 245/590 (41%), Gaps = 38/590 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + ++ L   I I +++G+YV   R        DY ACCPFHDEKTPSF    ++G
Sbjct: 1   MYYTEESLETLKHSIDIVSVLGEYVHLKRSGA-----DYKACCPFHDEKTPSFIVYPTRG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+C+ C   GD ++FL    G SF E+V  LA    V L V   +   ++  +  L R+
Sbjct: 56  HYHCYGCGEHGDAINFLMKQQGYSFSEAVLFLAKKFHVDLVVRTRETSGQDS-KDSLRRI 114

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  FF + L +    +    YL +RG     I+ F++GYAP+ R  ++     +  S
Sbjct: 115 NREAERFFQYCLLHLPEGEEALAYLYKRGFSPDTIDRFQIGYAPEQRLFIQAMEE-RNIS 173

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238
            +++  AG L            F  R++FPI+ + G  I F  R   + G   KY+NSPE
Sbjct: 174 VKQLEWAGYLAKDWFL------FAQRIMFPIQDALGYTIGFSSRRFKEGGRGGKYINSPE 227

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TILF K + LY    +   + K  R          +ILVEG  D L +   G    +++ 
Sbjct: 228 TILFKKSRVLYGLQFSRKRIAKERR----------VILVEGQADCLQMIDFGFNCTLAAQ 277

Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           GT+ TE  +  L      +  L FDGD  G +A+ +  DL       G       L  G+
Sbjct: 278 GTSFTETHVHELVKLGVSKAYLLFDGDAAGEKASLRVGDLCQ---AAGITAIVCRLPSGQ 334

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF+   G     +L+      +  L   +  +    TP E+A +   +   +     
Sbjct: 335 DPDSFLMQRGPEELRELLDRGEDYLSFLVWHKIHSYEQFTPREKARVIEEVIQQVRCWGS 394

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG--K 475
               + Y + +   ++      ++  S      +   +    K PS    Q+S      K
Sbjct: 395 PITIHEYLRQLASLVKVPEPAVLSYLSSITSAAEDKGKKVSAKEPSSESEQTSTEGKISK 454

Query: 476 LSKKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                 + EA ++  L+        +     Q L+   +   E + ++    + + +++ 
Sbjct: 455 KISPRMILEADVIRCLLFAKPEDEFVPATVKQYLSPEEFHCAEYRAIFVMAMNHYNDRQT 514

Query: 532 F-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +E+   +       LL  + R++    +     ++    + + ++ 
Sbjct: 515 LPSMDEMMSLVVGTEAMTLL--VARRMNTELMRDIVVQSIQKLLDKHWRD 562


>gi|76789536|ref|YP_328622.1| DNA primase [Chlamydia trachomatis A/HAR-13]
 gi|76168066|gb|AAX51074.1| DNA primase [Chlamydia trachomatis A/HAR-13]
          Length = 595

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 143/590 (24%), Positives = 245/590 (41%), Gaps = 38/590 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + ++ L   I I +++G+YV   R        DY ACCPFHDEKTPSF    ++G
Sbjct: 1   MYYTEESLETLKHSIDIVSVLGEYVHLKRSGA-----DYKACCPFHDEKTPSFIVYPTRG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+C+ C   GD ++FL    G SF E+V  LA    V L V   +   ++  +  L R+
Sbjct: 56  HYHCYGCGEHGDTINFLMKQQGYSFSEAVLFLAKKFHVDLVVRTKETSGQDS-KDSLRRI 114

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  FF + L +    +    YL +RG     I+ F++GYAP+ R  ++     +  S
Sbjct: 115 NREAERFFQYCLLHLPEGEEALAYLYKRGFSPDTIDRFQIGYAPEQRLFIQAMEE-RNIS 173

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238
            +++  AG L            F  R++FPI+ + G  I F  R   + G   KY+NSPE
Sbjct: 174 VKQLEWAGYLAKDWFL------FAQRIMFPIQDALGYTIGFSSRRFKEGGRGGKYINSPE 227

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TILF K + LY    +   + K  R          +ILVEG  D L +   G    +++ 
Sbjct: 228 TILFKKSRVLYGLQFSRKRIAKERR----------VILVEGQADCLQMIDFGFNCTLAAQ 277

Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           GT+ TE  +  L      +  L FDGD  G +A+ +  DL       G       L  G+
Sbjct: 278 GTSFTETHVHELVKLGVSKAYLLFDGDAAGEKASLRVGDLCQ---AAGITAIVCRLPSGQ 334

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF+   G     +L+      +  L   +  +    TP E+A +   +   +     
Sbjct: 335 DPDSFLMQRGPEELRELLDRGEDYLSFLVWHKIHSYEQFTPREKARVIEEVIQQVRCWGS 394

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG--K 475
               + Y + +   ++      ++  S      +   +    K PS    Q+S      K
Sbjct: 395 PITIHEYLRQLASLVKVPEPAVLSYLSSITSAAEDKGKKVSAKEPSSESKQTSTEGKISK 454

Query: 476 LSKKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                 + EA ++  L+        +     Q L+   +   E + ++    + + +++ 
Sbjct: 455 KISPRMILEADVIRCLLFAKPEDEFVPATVKQYLSPEEFHCAEYRAIFVMAMNHYNDRQT 514

Query: 532 F-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +E+   +       LL  + R++    +     ++    + + ++ 
Sbjct: 515 LPSMDEMMSLVVGTEAMTLL--VARRMNTELMRDIVVQSIQKLLDKHWRD 562


>gi|83310617|ref|YP_420881.1| DNA primase [Magnetospirillum magneticum AMB-1]
 gi|82945458|dbj|BAE50322.1| DNA primase [Magnetospirillum magneticum AMB-1]
          Length = 681

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 157/502 (31%), Positives = 238/502 (47%), Gaps = 36/502 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ F+ ++   +P+S ++G+ V   ++       ++   CPFH+EKTPSF  ND KGF+
Sbjct: 2   IPKGFLDEIRDRVPVSAVVGRRVALAKKGR-----EFTGLCPFHNEKTPSFTVNDDKGFF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ + FL    G SF+E+V+ LAA AG+ +P   P+  +    +  L    E
Sbjct: 57  KCFGCGAHGNAIGFLERAHGLSFVEAVEELAAEAGLEVPKASPEERRDAAARASLYEANE 116

Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A  +F H L   +      +YL  RG+       F+LG+AP+   +LR  L  + F ++
Sbjct: 117 AACAWFEHQLTTTKAGADALFYLSRRGVAPETRARFRLGWAPNG-DALRRALDAERFPDD 175

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPETI 240
            +IEAGLL   D+  T+   FR R++FPI   RG+VI FG RTLS      KYLNSP+T 
Sbjct: 176 LLIEAGLLRRRDDG-TTGAFFRGRVMFPIMDRRGRVIGFGARTLSADPGVPKYLNSPDTP 234

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KG+ LY    A +   +  R           ++VEGY+DV+++ Q G    V+ LGT
Sbjct: 235 LFRKGEVLYGLSHARDGAAEHSRA----------VVVEGYLDVIAMHQGGFPYAVAPLGT 284

Query: 301 ALTEYQLRLLWKLSPR-----IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ALT  Q+  +W+L+P       +L  DGD  G  A  +A ++ +  L PG  + F  +  
Sbjct: 285 ALTPGQVEEIWRLTPDGRGEGPILMLDGDRAGAAAMRRAAEVAVPILRPGRSLRFAQMPE 344

Query: 356 G-EDPDSFIRC--------YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
           G +DPD  +           G       +  + PL D+LW+        +TP+  A LE 
Sbjct: 345 GAKDPDELLNPPGDSVGPQEGAFRLASALGAARPLADVLWEALVAEIPPDTPERFAALEA 404

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQ---LFQKYITEHSGYGRYWKKNARHRDQKGPS 463
                   I D  +R  Y    R RL +   +    +   S   R+    A         
Sbjct: 405 RAYGLAVRINDHAVRRAYLADWRRRLGEAEDMDPPVLRLGSAKTRFAPAKAHLHLGLEWR 464

Query: 464 QRLMQSSLVKGKLSKKPSLREA 485
           + L  +   KG+ S   +  E 
Sbjct: 465 RALRDAKGDKGEASPVKAWLEE 486


>gi|187478820|ref|YP_786844.1| DNA primase [Bordetella avium 197N]
 gi|115423406|emb|CAJ49940.1| DNA primase [Bordetella avium 197N]
          Length = 674

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 140/487 (28%), Positives = 237/487 (48%), Gaps = 28/487 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  FI+DLL  + + +++G+YV   +   N +       CPFH+EK+PSF  + +K FY
Sbjct: 2   IPESFIQDLLARVDVVDVVGRYVQLRKGGANLL-----GLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQT----D 116
           +CF C   G  ++F+    G SF E+V+ LA   G+ +P     P+ + +   +      
Sbjct: 57  HCFGCGAHGSAITFMMEHTGASFPEAVRSLAGSVGMTVPEEPRSPRQQAESVRRKAEVSR 116

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             ++++ A   +   L+++       YL +RG+     + F LG++   R+ L +     
Sbjct: 117 HTQVLDAAQAQYLQWLRSS--PEAIAYLKQRGLTGAVAKTFGLGWSGTDRHGLAKVF--D 172

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            + +  ++EAGL+I+ ++    YDRFR R++FPIR++RG +I FGGR + KGE  KYLNS
Sbjct: 173 NYDDPTLVEAGLVIESEDGRR-YDRFRERIMFPIRNARGSLIGFGGRIIGKGEP-KYLNS 230

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F KG  LY  +     ++           +  +I+VEGYMDV+ L Q G+ N V+
Sbjct: 231 PETPIFSKGHELYGLWEGRLAIR----------QAGVVIVVEGYMDVVGLAQLGIGNAVA 280

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGT+ T   ++ L + S ++V  FDGD  G RAA++A+   L  L     + F+ L   
Sbjct: 281 TLGTSTTPDHVKKLLRASDKVVFSFDGDSAGRRAAWRALQACLPVLRDDISIRFLFLPSE 340

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPDS++R +G  AF   + ++  L   L        +    + RA      K  +  I 
Sbjct: 341 HDPDSYVREFGAEAFRDQMAQASALSRFLLDELASRHNLGEAEGRASCLHEAKPLLAEIP 400

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +  L+    + +  +L QL  + + +         +      Q+  S     + +     
Sbjct: 401 ECGLKTQIEREMA-KLVQLTPEEMAQALAQHAAQMQAQAAARQQVQSPSAALTPVAPAGD 459

Query: 477 SKKPSLR 483
              P   
Sbjct: 460 DPPPDWA 466


>gi|255994476|ref|ZP_05427611.1| DNA primase [Eubacterium saphenum ATCC 49989]
 gi|255993189|gb|EEU03278.1| DNA primase [Eubacterium saphenum ATCC 49989]
          Length = 595

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 137/517 (26%), Positives = 221/517 (42%), Gaps = 38/517 (7%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           +    +     I ++IG+ V   R   N     Y   CPFH EKTPSF  ++ K F+ CF
Sbjct: 4   ETADKIKSGCNIVDVIGKEVKLKREGAN-----YSGLCPFHGEKTPSFKVSEQKQFFKCF 58

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
            C   GD ++F+       F+E+V++LA    + +        +K   +     L +   
Sbjct: 59  GCGESGDVIAFVMKYYHLDFMEAVKKLADEYSIAIDEGSF---RKGISKAKYYDLTKKVA 115

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
             F  +L +        YL +RG+D   +  F +G+A +   ++   L            
Sbjct: 116 KQFVTNLFSGSGSSAKAYLLKRGVDEQTMAKFGMGFALNDWANILNSLEDDEKVTAL--- 172

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
             L I G     SYD+F NR+IFPI      VI FGGRTL+  +  KYLNS ++++FHK 
Sbjct: 173 -QLGIIGSKQNRSYDKFVNRVIFPIIDLNRHVIGFGGRTLTDDKGPKYLNSSDSVIFHKK 231

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
            +LY    A + ++K  R           +LVEGYMDV+S+ QAG+   V+SLGTALTE 
Sbjct: 232 DHLYGLNIAADNIRKKDRA----------VLVEGYMDVVSMHQAGIDEAVASLGTALTEE 281

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
           Q++LL + +  IVL +D D  G +A ++AI      +  G     V L   +DPD  I  
Sbjct: 282 QVKLLKRFTRNIVLSYDSDAAGKQATFRAIQ---RIVKQGLSPRVVDLGAYKDPDELITE 338

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            G+ A+   +  S+  +D +          +   +R   E  ++     + D        
Sbjct: 339 EGRDAYLAKLDNSIAYIDFVMDYIEGMHDDSLQGKRDAKEDIIEFL--TVADDMEIAEIG 396

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + I +R        I++            R    KG S+R+          ++K    EA
Sbjct: 397 KKISERFNIDEDSLISKVRSAKSNVNHPRRGNANKGASERM---------QNRKKKYVEA 447

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
             +   ++    L +     + + +       +   L
Sbjct: 448 GAIALCMSGKKYLGKIVS--SSMNFFTENGYHILEVL 482


>gi|256372041|ref|YP_003109865.1| DNA primase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008625|gb|ACU54192.1| DNA primase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 588

 Score =  287 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 138/622 (22%), Positives = 238/622 (38%), Gaps = 68/622 (10%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M      ++ +     +  L+ + V   R         +   CPFHDE++PSF  N   G
Sbjct: 1   MAIADADVRRVRDATDLVALVSETVALRRVGR-----RWVGLCPFHDERSPSFSVNPELG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            YYCF CH +GD ++F+  + G  F E+V++LA  AG+ +        +    +  L  +
Sbjct: 56  VYYCFGCHARGDAITFVREVQGLDFTEAVEQLARRAGLRIEHEAAGEPRASTRREALT-V 114

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E  T ++   L     +R   YL  RGI    I  F++GYAP SR +    L       
Sbjct: 115 LEAQTTWYADQLAGPAGERAREYLAARGISEDQIAKFRIGYAPPSRAASLAELGASAAIA 174

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK--GESVKYLNSPE 238
            ++     +       + +D    R++FPIR   GQVIAFGGR +        KY N+ +
Sbjct: 175 LEVG----IRVRGQDGSLHDPMSGRIVFPIREVAGQVIAFGGRVVPPARDGVPKYRNTQD 230

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T  +HK + LYN   A +   +  R           ++ EGY DV++L  AGV   V++ 
Sbjct: 231 TAYYHKRQVLYNLDRARSTFLRERRA----------LVCEGYTDVIALDAAGVA-AVATC 279

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALT+  LR+L + +P++V+ FDGDD G RAA +   L       G  +    L  G D
Sbjct: 280 GTALTDDHLRILRRFAPQVVVLFDGDDAGQRAAEQVAPLAE---AAGVELLVATLPGGRD 336

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P          +  + +   +P+     +R        + + RA     +   +  + D 
Sbjct: 337 PAEAF-AEDPDSLRQALASPVPVARFRLERVLARADLRSVEGRARAVADVAAVLASVGDP 395

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            +R  Y   + DR      +         R  +                    ++   + 
Sbjct: 396 LVRSEYIAMLADRTGFREAELAARLPSALRPRR--------------------LRTSEAS 435

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-------FSDFVEQKY 531
                 A++L+ L + P +       L    + +   + L + L        +  +E   
Sbjct: 436 GLDRPAASVLIALASDPGLGDLVVPAL----FRDPTYRALAAALGSRGEAPVAAALEGVG 491

Query: 532 FLPEEIHQRLCERGFGELLKQLD----------RQVRDAGLWSATTEANIVDVRQGYQQA 581
               E++ R+                          R+A   +  +     + ++ +   
Sbjct: 492 DDVRELYHRIAASDSEGSFDDALVVLVLREAGVELEREARGLAGLSGPEREERQRRWTDH 551

Query: 582 LALYKRFRLLSRQKEEIEKQIA 603
           +    R R   R  +     +A
Sbjct: 552 IMTLHRLRTEPRDLDAAGALLA 573


>gi|110004381|emb|CAK98719.1| putative dna primase protein [Spiroplasma citri]
          Length = 626

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 130/655 (19%), Positives = 270/655 (41%), Gaps = 64/655 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I  +   + I  ++ +Y+  ++R  N     YWA CPFH +  PS   +  K  Y
Sbjct: 4   ISNEKIDLIKSKVNIVTVMSEYLSLEKRGRN-----YWAVCPFHQDSHPSMSISPEKQIY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
            CF+C   G+  +FL      SFIE+++++A +A + L  +    +  K ++ +  +  +
Sbjct: 59  RCFACSAGGNVFTFLQEYENISFIEALKKVAVMANISLDELTAYQEKPKYDQSEQLIFEI 118

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             +A+ +F ++L+  +      YL +R I++  IE+F++GYA      L   L +KG+S 
Sbjct: 119 NALASAYFSNNLETKKAYDAKEYLTKRNINNTEIELFQIGYAESGFDHLYHFLIKKGYSI 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSPET 239
             I +AGL+   +     YD F NRL+FPI++    VI F GR + +  +  KYLN+PET
Sbjct: 179 NDIQQAGLITIKNG--KVYDYFNNRLMFPIKNEDSYVIGFSGRIIGTTSQVAKYLNTPET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K + +YN   A  +++            + +IL+EGYMDV+SL +  ++N V+ +G
Sbjct: 237 KVFKKEQLMYNIHRAKPFIR----------QQNNLILLEGYMDVISLEKLDIKNTVALMG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T L+EY L+ + +L+   +L  DGD  G+ A+ KA    +  L    +V  VL    +DP
Sbjct: 287 TNLSEYHLKEIKRLTNECLLFLDGDKAGIHASLKAA---IKLLSNNLKVKIVLNKTQQDP 343

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D  +        + ++  +   ++          +    +E  E    +   I    +  
Sbjct: 344 DELVNSGQGELIQTMLANAQHPINFALDYFQNKFNLQAANELEEFFNIVAPLIKASPNPL 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK----------------------KNARHR 457
            +      +        Q   T+      Y K                      + +   
Sbjct: 404 EQELAVNNLVKITGISKQTITTKIGQIKSYQKAVFSPITSEPIPNVTNDNNYLQRLSTRF 463

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
             +     +++ +  K K  K+  L E  ++L L+          +++ ++ +  +  + 
Sbjct: 464 KPQQSKTVVIKKTKYKIKNLKRYLLAEQNMVLQLLASRKAADFYQRKIGNLNF--DGYRL 521

Query: 518 LWSFLFSDFVEQ---KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
           L + + + +      +      +   + +    ++L  +  +      ++     +   +
Sbjct: 522 LANDIITYYNGHLGAENVKINMLCDEINDPNLKKILMDIINKSTIKIKYNKKELEDYALL 581

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
              +                 +EI     ++       +   +   + +++ ++ 
Sbjct: 582 IDDFANE--------------KEIAMLWNKLEKASNLIEQQAISMEIDKLNQRLK 622


>gi|310777991|ref|YP_003966324.1| DNA primase [Ilyobacter polytropus DSM 2926]
 gi|309747314|gb|ADO81976.1| DNA primase [Ilyobacter polytropus DSM 2926]
          Length = 597

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 144/629 (22%), Positives = 251/629 (39%), Gaps = 40/629 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + +  L+  + I  ++G+YVD  R   N     +   CPFH +  PSF  + SK 
Sbjct: 1   MRYNSEDVDKLIEELNIVEVVGEYVDLKRSGAN-----FKGLCPFHKDNNPSFVVSPSKN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              CF C   G+ + F S      F ++++ L+    + +  V      +         +
Sbjct: 56  ICKCFVCGAGGNSIKFYSDYNKVPFGQAIKDLSEKYKIKVKPVKGYDVLR-DTNKKYYEI 114

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A ++F   + +   +    YL +R      I   K+G+AP    +L ++L  KG   
Sbjct: 115 LNDALEYFCEKIFSNEGRDALEYLSKRKFKPDFISENKIGFAPRGWSNLYDYLLNKGHEL 174

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSPET 239
             I+  GL+ +       YD FR+R++FPI S  G VIAFGGR+L  + +  KY+NSPE+
Sbjct: 175 NDIVTLGLVKE--GEKGHYDAFRDRIMFPIYSPSGSVIAFGGRSLEDRKDIPKYINSPES 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +FHKG+NLY      N +++              I++EGYMDVLS    G    V+SLG
Sbjct: 233 PVFHKGQNLYGIKEKGNIIRRKAYS----------IVMEGYMDVLSAHSFGFDVTVASLG 282

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA TE Q +LL + +  ++L FD D+ G  AA K+  +       G  +  + L   +DP
Sbjct: 283 TAFTEDQAKLLKRYTSNVILAFDMDNAGRVAAEKSGII---LKSHGFNIRVLELENAKDP 339

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D F++ YGK  F K + ES  + D L++  ++         +       K+    ++   
Sbjct: 340 DEFLKKYGKNEFLKSVKESKEIFDYLYEFYSKEYDLTNLMAKQNFVDRFKSFFQSVETDL 399

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y   +   L+   +          +  KK  +    K       +S +        
Sbjct: 400 EKSLYIDKLSKSLEIDKELLNDILIINNKKSKKKIKSEIYKQKDFGEKRSEI-------- 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E   L  ++  P       ++       +             F  + +     +  
Sbjct: 452 IDKLEMDTLKIILTKPEYYSYFQEKKIKSNLFHK---------IIVFFSEDHTSGNGVKM 502

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-EI 598
            L    F E  K+   ++  + +  +  +    D ++ Y        +  L   +   +I
Sbjct: 503 ILNSDSFEEEEKKQIIEIAASSIEYSDEKKLFKDFKEVYLGWFRREIKETLEKYKIHGDI 562

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                        EKT   +  L  ++ +
Sbjct: 563 VSFFKIRKISDNIEKTDTDLEELKNLYRE 591


>gi|289432440|ref|YP_003462313.1| DNA primase [Dehalococcoides sp. GT]
 gi|288946160|gb|ADC73857.1| DNA primase [Dehalococcoides sp. GT]
          Length = 588

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 143/625 (22%), Positives = 264/625 (42%), Gaps = 60/625 (9%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS- 66
           ++++   + I + IGQY    +             CPFH EK  SF        ++CF  
Sbjct: 5   VEEIKQKLDIVSFIGQYTKLTKAGR-----TMRGICPFHSEKHGSFFVYPEAQNWHCFGA 59

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126
           C+  GD  +F+    G  F  +++ LA  AGV LP         +  +  L  +   A  
Sbjct: 60  CNTGGDIFAFVMKKEGLDFKAALELLAEKAGVSLP--SQINPAIKDQRDRLYEINLSAAQ 117

Query: 127 FFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
           ++H+  L + + +    YL+ RG++  ++  F+LGYA      L ++L+++ +S+E +++
Sbjct: 118 YYHNLLLNSPQAENARIYLNSRGLNEQSLADFQLGYALADWQGLYDYLKERSYSDEDLLK 177

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
           AG+ I   +    +DRFRN +I+PI + +GQ+  FG R +      KY NSP+T LF K 
Sbjct: 178 AGV-IVRSDEGRIHDRFRNNIIYPIANYKGQIAGFGARVM-DNSQPKYRNSPQTDLFDKS 235

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
             LY    A   ++++ R           I+VEGYMD +   Q G  N V+ +GTALTE 
Sbjct: 236 SLLYGLHLASASIRENNRA----------IIVEGYMDAIMSHQGGFTNTVACMGTALTER 285

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
           Q+ L+ + +  +VL  D D  G  A  +AID         + +   +   G+DPD  IR 
Sbjct: 286 QIALIKRQTKNLVLGLDSDSAGEEATLRAID---YENQMESEIRVAVPEGGKDPDELIR- 341

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
           +   ++++++  + PL+D +++        N+   +++L  HL   I+ ++D   + +Y 
Sbjct: 342 HSPQSWQEILDNARPLLDYIFEHSQRGLDLNSAAGKSKLTDHLLPIISKMEDGVRQSHYL 401

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             + + +     + +          +       +    Q     +L            E 
Sbjct: 402 GKLAEIVSTSQNRILERLKKLTNETRNAKVTGKEAPSGQAPKNPAL------------EE 449

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L  L     + +  Y  L     +  + ++L   +++   E              +  
Sbjct: 450 YALSLLFTSAEVTRFAY-NLHPEYLEIPQYRELL-AIYNQSAE--------------KDN 493

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQ 604
               L +  R+  D  +       NI D  + Y   L L +R  R L+ +  +   +I Q
Sbjct: 494 LRPCLDENLREYYDNLMNKNPANDNIED--KFYDLCLRLRERYLRNLAVKLNQALSEINQ 551

Query: 605 VTAKGEAEKTAILISILHEVHIQIH 629
                   +   L     +V+ ++ 
Sbjct: 552 PETT----EYQALNDQCVKVNEELR 572


>gi|313679723|ref|YP_004057462.1| DNA primase [Oceanithermus profundus DSM 14977]
 gi|313152438|gb|ADR36289.1| DNA primase [Oceanithermus profundus DSM 14977]
          Length = 586

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 155/626 (24%), Positives = 258/626 (41%), Gaps = 59/626 (9%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           +++   +    ++ +YV           G +   CPFH+EKTPSF+ ++ KG +YCF C 
Sbjct: 5   EEIRSRLDFKAVVERYVPLKPAGK----GRWKGLCPFHNEKTPSFYVDEQKGMFYCFGCK 60

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
             GD   F+  + G  F E++++LA   GV LP   P          DLI +  +A  +F
Sbjct: 61  AGGDAFKFVQMIEGVDFREALEKLAQETGVELPERGPAHRPS----KDLIEVNRLALSYF 116

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
            + L    +     YL  RG++   IE + LG+AP     L   L++     +  +EAG+
Sbjct: 117 RNHL----EGAALAYLQRRGLEEATIERYALGFAPKRWDGLVNFLKRHDVPLKLGLEAGV 172

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
           L + D     YDR R R++FPIR   G+V+AF GR LS  ++ KYLN+PE+ +F K + L
Sbjct: 173 LAEKDG--RVYDRLRARVVFPIRDPMGRVVAFTGRALSDEDAPKYLNTPESDVFKKNRLL 230

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           Y +  A   ++   R           I+VEG  DVL+L Q G    V+ LG+AL+  Q +
Sbjct: 231 YGYPEARKSIRDRKRA----------IVVEGLFDVLALAQMGWTETVAVLGSALSPEQAK 280

Query: 309 LL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS-FIRCY 366
           LL    + R+ L FD D+ G RA    +D+ +           VLL  G DP        
Sbjct: 281 LLERAEAERLYLAFDADEAGRRATLAGLDVGV---ARRFLTFAVLLPEGRDPGDLLTDPG 337

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKLRYYYS 425
           GK AF + + ++LP V+  +    E    NT + +  +   L     +      +     
Sbjct: 338 GKAAFARALDDALPEVEFRFAAAAEGADLNTAEGKRRVLEQLLPRLTDAEPFDPVAEALK 397

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             I DRL    +          R           K P     Q +        +  L E 
Sbjct: 398 AVIVDRLGLDPRALEDLVHSQRRR----------KRPVVERAQVAAATQDSGDRLLLLEL 447

Query: 486 ALLLTLIN-HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            ++  L+   P  L +  + + D  +         +       E+ Y     + +     
Sbjct: 448 DVIAQLLAVEPNQLADWVRYVEDHTW--PPDDAFLAEFIRVAEEEGYKPRRILDRFAGRG 505

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
             G L ++L     +             + ++   ++LA   R   L R++  +   + +
Sbjct: 506 EGGRLFERLMLSGSEH----------PAEHKEHLDKSLA-RLREGYLRRKRARLTAALKE 554

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQ 630
                + E+   ++  + E+   I  
Sbjct: 555 -----DPERALEILKEIQELDHAIEA 575


>gi|303233345|ref|ZP_07320014.1| DNA primase [Atopobium vaginae PB189-T1-4]
 gi|302480474|gb|EFL43565.1| DNA primase [Atopobium vaginae PB189-T1-4]
          Length = 637

 Score =  286 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 137/663 (20%), Positives = 258/663 (38%), Gaps = 74/663 (11%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           + +   +    L+G++V   R+ +     D W CCPFH EK+ SFH N   G + CF C 
Sbjct: 7   EKIRQVVNFEQLVGEHVQLTRKGS-----DLWGCCPFHHEKSASFHINPQTGLWKCFGCG 61

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
             GD  +++      +F  ++Q LA   G+ L        +    +  L   +  A   F
Sbjct: 62  AGGDMFAYVMRAENLNFAGAMQYLADKYGIELSHT--PHARDGIRRNRLFACLAAAEQHF 119

Query: 129 HHSLKNARDK---RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
             +L     +       YL  RG+ S   + + +GYA     +L   L + GFS ++++ 
Sbjct: 120 MRTLFTCPQEDVSAARSYLHNRGLTSDICKAWSIGYA-KGDDNLIAALTRSGFSRKELLA 178

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
             +      +     RF NR++F I   + + I FGGR +      KYLN+ ET LFHKG
Sbjct: 179 CDVA--HAGAYGLRSRFFNRVMFAIHDEQSKCIGFGGRVI-NDGKPKYLNTKETPLFHKG 235

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
           K+LY    A + +            +  +I+ EGY DV+++   G  N V++LGTALT  
Sbjct: 236 KHLYAIDKAKDGI----------IQTGEVIVCEGYTDVIAMHTHGFTNTVAALGTALTLN 285

Query: 306 QLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
            +RL+      RI+  FDGD  G +AA +AI            +  V+L   +DP  F+ 
Sbjct: 286 HIRLIERFARTRIICMFDGDAAGQKAAERAIQ---FIDQTSLALMCVVLPNNQDPCEFLM 342

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
            + K      + ++ PL++ + +          P +R E        ++ +K   L   +
Sbjct: 343 SHPKEELASYLSQAEPLMNFVLRHTLARFDMRVPGQRIEALKSAARILSAVKHSLLIDDF 402

Query: 425 SQAIRDRLQQLFQKYITEH---------------------------------SGYGRYWK 451
           +  + D L     +   +                                  + +    +
Sbjct: 403 ATQLADMLALDVTRVKEQIMKTQPMTHPSFSDEPVPSASAPSTATPAAAMQAAPFQHGAQ 462

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
              +    +G S        +    +K+    E  LL  L+  P       Q LA I + 
Sbjct: 463 SADKQATPQGASASQAAHMQLLSSDAKRQYKAEEELLCLLVRTPGAYARYAQPLAAIPWI 522

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
           +++ +++  F+     +       ++   +C +            +  +G   +TT  + 
Sbjct: 523 DDDHKRIAQFICQHASQ---MDIPQLIDTICAQLPS------AAYILASGRIPSTTTLSQ 573

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            D       ++    +    + + +EI+  + + +     E++  L+     +   ++ +
Sbjct: 574 DDAISFLLTSI----QIVSSTMRMQEIKSYLKRNSQTLSFEESQALLKQATALQKNVNNL 629

Query: 632 ESQ 634
           +  
Sbjct: 630 KKS 632


>gi|224418411|ref|ZP_03656417.1| DNA primase [Helicobacter canadensis MIT 98-5491]
 gi|253827729|ref|ZP_04870614.1| DNA primase [Helicobacter canadensis MIT 98-5491]
 gi|313141941|ref|ZP_07804134.1| DNA primase protein [Helicobacter canadensis MIT 98-5491]
 gi|253511135|gb|EES89794.1| DNA primase [Helicobacter canadensis MIT 98-5491]
 gi|313130972|gb|EFR48589.1| DNA primase protein [Helicobacter canadensis MIT 98-5491]
          Length = 557

 Score =  286 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 143/597 (23%), Positives = 259/597 (43%), Gaps = 51/597 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I+ L   + I  ++  Y++  +         + ACCPFH EKTPSF  N +KGFY
Sbjct: 2   IAEQSIEALKNQLDIIEVVSHYIELKKIGA-----TFKACCPFHQEKTPSFVVNQNKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD ++F+      ++ E++++LA +    L     K   +E       R++E
Sbjct: 57  HCFGCGASGDSIAFVMQYEKLNYKEAIEKLAQLYNFTLTYEKDKNSFQEDS----YRIME 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
              +++ +SL     K +  Y+  RGI     + F+LGYA  +   +    +     +E 
Sbjct: 113 FMREYYQNSLT----KEVESYIQSRGITLSTQQKFELGYAGQNYEIMATLQKHSINLQEA 168

Query: 183 IIEAGLLIDGDNSAT-SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           +    L +D +N A   Y R   RLIFPIRS + +++ FGGRTL      KY+NSP+T L
Sbjct: 169 LNLGILGVDNENGAKRYYARLTQRLIFPIRSPQNKIVGFGGRTL-GNHPAKYINSPQTKL 227

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+K + LY +  A   + K             +I+ EGY+DV+ L QAG  N V++LGTA
Sbjct: 228 FNKSQILYGYPQAKETIYKK----------EEVIVTEGYLDVIMLHQAGFTNAVATLGTA 277

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT+  L LL K +P+++L +DGD+ G+ AA+KA  L+      G     VL   G DP  
Sbjct: 278 LTKEHLPLLSKGNPKVILAYDGDNAGMNAAFKAASLLSLANKEG---GVVLFDGGLDPAD 334

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            ++       ++L + S+P +D + +   +    + P ++ +        + H     ++
Sbjct: 335 MVKNGDIARLKELFLTSIPFIDFVLEWIIKKYDLDNPLQKDKCLQEALEYLQHF-SLVIQ 393

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y   +  RL+        + +      K+  +                          
Sbjct: 394 EDYKGFLAQRLKLPSHLIRIKKNNQKEQIKEPIQSEGS--------------------FD 433

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           L E A++ +++    +L+     L    + +   ++ +  L    +E    +   +  ++
Sbjct: 434 LAEKAIIKSVLEDMNLLEFVMDFLEPTMFFSQ--KEAYLKLLKGELEDPSLIRILLDNKV 491

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             +   +L +Q+   +            N   +    +  L    +  L + +K ++
Sbjct: 492 KAQDKEKLKQQMIMILYQYYEEQKQKVINEKQLSLREKSFLIRKYQKYLDNLKKGDL 548


>gi|258545970|ref|ZP_05706204.1| DNA primase [Cardiobacterium hominis ATCC 15826]
 gi|258518775|gb|EEV87634.1| DNA primase [Cardiobacterium hominis ATCC 15826]
          Length = 564

 Score =  286 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 151/572 (26%), Positives = 235/572 (41%), Gaps = 46/572 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDW-DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P+ FI +L     +  L+   + +  +  +N     +WACCPFHDEKTPSF  N  KG
Sbjct: 4   RIPKPFIDELTARTDLLALLSSRITFTKKSGSN-----HWACCPFHDEKTPSFSVNTQKG 58

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL--- 117
           FY+CF C V GD + FL       F E+++RLA   G+ +P  D   +   + +      
Sbjct: 59  FYHCFGCGVSGDAIRFLMDYDNLPFPEAIERLAEFNGLSVPYEDDGRQVDPQEKDRYDLG 118

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  +  A  FFH +      K    YL +R +    ++ F LGYAP         L   G
Sbjct: 119 LECLADAAAFFHEAFYGESGKAARDYLRQRRLKKATVDTFLLGYAPPGN----ALLAHLG 174

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
                 +   + + G      YD FR R+IFPI + +G+ IAFG R +      KYLNSP
Sbjct: 175 SKYPLQLLQDVGLVGVKDDHHYDWFRERVIFPIHNIKGKTIAFGARAM-GEAQPKYLNSP 233

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET  F+K   LY    A+                  +++ EGYMDV+ L Q GV+N V++
Sbjct: 234 ETTWFNKRFELYGLHQAMQ------------TRERTLLVTEGYMDVIKLWQHGVKNAVAA 281

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           LGTA+ +  +  L K + ++   FDGD  G +AA KA++ V       +   F+ +  GE
Sbjct: 282 LGTAIGDSHISQLRKRAEKVYFSFDGDTAGQKAARKALEAVFSQHDKQHEWRFMFMPAGE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR-SFNTPDERAELEIHLKNCINHIK 416
           DPDS +   G  AF++++  SLP      +   +   +  + + +AEL    +  +  + 
Sbjct: 342 DPDSLVEKAGIAAFQQVMDASLPASAFFLQTLDDGAGAQRSAEAQAELAGEAQRWLELLP 401

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D   R      +  R                      A       P+ R  +  +V    
Sbjct: 402 DADFREILRAQVMKRFDLPVLTLSGNA----------ATATHTASPAWRPPREMVVVKPK 451

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            K   L    LL      P       +   +   ++ ELQ  W  L+   ++        
Sbjct: 452 DKGIQLMARLLLQ-----PQCALPLRRW--EYPPEDAELQLFW--LYCYALQSSGADSAH 502

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
               L + G  E +    + +          E
Sbjct: 503 AEAFLHQHGVYEAVASAAKLLARLDAQQQRDE 534


>gi|73748392|ref|YP_307631.1| DNA primase [Dehalococcoides sp. CBDB1]
 gi|73660108|emb|CAI82715.1| DNA primase [Dehalococcoides sp. CBDB1]
          Length = 588

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 147/625 (23%), Positives = 272/625 (43%), Gaps = 60/625 (9%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS- 66
           ++++   + I + IGQY    +             CPFH EK  SF        ++CF  
Sbjct: 5   VEEIKQKLDIVSFIGQYTKLTKAGR-----TMRGICPFHSEKHGSFFVYPEAQNWHCFGA 59

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126
           C+  GD  +F+    G  F  +++ LA  AGV LP         +  +  L  +   A  
Sbjct: 60  CNTGGDIFAFVMKKEGLDFKAALELLAEKAGVSLP--SQINPAIKDQRDRLYEINLSAAQ 117

Query: 127 FFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
           ++H+  L + + +    YL+ RG++  ++  F+LGYA      L ++L+++ +S+E +++
Sbjct: 118 YYHNLLLNSPQAENARIYLNSRGLNEQSLADFQLGYALADWQGLYDYLKERSYSDEDLLK 177

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
           AG+ I   +    +DRFRN +I+PI + +GQ+  FG R +      KY NSP+T LF K 
Sbjct: 178 AGV-IVRSDEGRIHDRFRNNIIYPIANYKGQIAGFGARVM-DNSQPKYRNSPQTDLFDKS 235

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
             LY    A   ++++ R           I+VEGYMD +   Q G    V+ +GTALTE 
Sbjct: 236 SLLYGLHLASASIRENNRA----------IIVEGYMDAIMSHQGGFTYTVACMGTALTER 285

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
           Q+ L+ + +  +VL  D D  G  A  +AID         + +   +   G+DPD  IR 
Sbjct: 286 QIALIKRQTKNLVLGLDSDSAGEEATLRAID---YENQMESEIRVAVPEGGKDPDELIR- 341

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
           +   ++++++  + PL+D +++        N+   +++L  HL   I+ ++D   + +Y 
Sbjct: 342 HSPQSWQEILDNARPLLDYIFEHSQRGLDLNSAAGKSKLADHLLPIISKMEDGVRQSHYL 401

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             + + +    Q  I E     +   +NA+  +++ PS +  ++              E 
Sbjct: 402 GKLAEIVSTS-QNRILERLKKLKNETRNAKVTEKEAPSGQAPKNPA-----------LEE 449

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L  L     + +  Y  L     +  + ++L   +++   E              +  
Sbjct: 450 YALSLLFTSAEVTRFAY-NLHPEYLEIPQYRELL-AIYNQSAE--------------KDN 493

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQ 604
               L +  R+  D  +       NI D  + Y   L L +R  R L+ +  +   +I Q
Sbjct: 494 LRPCLDENLREYYDNLMNKNPANDNIED--KFYDLCLRLRERYLRNLAVKLNQALSEINQ 551

Query: 605 VTAKGEAEKTAILISILHEVHIQIH 629
                   +   L     +V+ ++ 
Sbjct: 552 PETT----EYQALNDQCVKVNEELR 572


>gi|87311288|ref|ZP_01093410.1| DNA primase [Blastopirellula marina DSM 3645]
 gi|87286028|gb|EAQ77940.1| DNA primase [Blastopirellula marina DSM 3645]
          Length = 592

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 144/615 (23%), Positives = 239/615 (38%), Gaps = 49/615 (7%)

Query: 22  GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81
           G Y+   R+        Y A CP+H++  PS   N  +  + C+ C + GD  SF+    
Sbjct: 2   GGYMPLTRQGRI-----YLALCPWHNDTRPSLQVNPDRQSWRCWVCGIGGDIFSFVMRRE 56

Query: 82  GCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSL-KNARDKRL 140
           G  F E+++ LA  A + L    P        +  L      A   F  +L  +      
Sbjct: 57  GIDFREALELLADRANISLTKSAPTQPGSPNDKKTLFAAAAWAERLFQKNLAHSPDADAA 116

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
             Y  +RG+   ++  F LGYAPD    L +      FS   +   GL+     S   YD
Sbjct: 117 RRYFHDRGVSQDSVNRFHLGYAPDQWQWLVDQAYSTEFSAAVLENVGLIGRSSTSGKPYD 176

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKG---ESVKYLNSPETILFHKGKNLYNFFGALNY 257
           RF+ R+IFPI   +G+ I FGGR L +    ++ KY+NSPET LF K  NLY    A + 
Sbjct: 177 RFKGRVIFPIHDVQGRTIGFGGRILPQNTDVKAAKYVNSPETKLFSKSDNLYALDLARDA 236

Query: 258 LQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI 317
           +          + +   I+VEGY DV++L QAG++NVV+ LGTAL E  + LL + + RI
Sbjct: 237 I----------SETRSAIVVEGYTDVIALQQAGIRNVVAVLGTALGERHIHLLRRYADRI 286

Query: 318 VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            L  DGD+ G R   + ++L +        +  V L    DP  F++  G  AF   +  
Sbjct: 287 YLLLDGDEAGQRRTNEILELFVSEQA---DLRIVTLPDQLDPCDFVQQRGVDAFSAALET 343

Query: 378 SLPLVDMLWKRETE----NRSFNTPDERAELEIHLKNCINHIKDQK-----LRYY-YSQA 427
           S+  ++   +  T      R  +  +E  E  +        ++D       LR + +   
Sbjct: 344 SVDALEHKLRITTAGVDVRRDLHKANEALESLLSTLARAPRLRDDTGSDVRLREHQFLAR 403

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           +  + +    +     S   R    + R  +Q   S RL  + L                
Sbjct: 404 LARKFEVDELELRKRLSSLRRATSASVRPPEQADESTRLRAADLDPYD---------RNF 454

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           L  L   P +      E+      +    +L+    S   +       ++  ++      
Sbjct: 455 LEVLACQPDLTILAADEIGVDEMSSAAAVQLYQTFISACHDGSPVEFTQLLSQIESESLK 514

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            LL +LD       +       +   + +            R    +   +E++   +  
Sbjct: 515 GLLVELDELATAKKI------IDPETLLKTIIADFKRRYEDREGRDRVTALEQK--NLQP 566

Query: 608 KGEAEKTAILISILH 622
           + E +    +I    
Sbjct: 567 QEELDVLQQMIERQR 581


>gi|257470877|ref|ZP_05634967.1| DNA primase [Fusobacterium ulcerans ATCC 49185]
          Length = 582

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 143/622 (22%), Positives = 258/622 (41%), Gaps = 52/622 (8%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           L+  + I  ++G++V+  +  +      Y   CPFH + +PSF  + SK    CF C   
Sbjct: 2   LIESLRIEEVVGEFVELKKSGS-----SYKGLCPFHQDTSPSFMVSPSKNICKCFVCGAG 56

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
           G+ + F S     SFIE+V+ L+   G+P+       +K  +      +++E A +FF  
Sbjct: 57  GNPIKFYSEYKKISFIEAVEELSKKYGIPI-KGTRNSKKNNENYDKYYKIMEDAHNFFKE 115

Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190
            + +   +    YL  R ++   I+  +LG+AP+    L +HL  KG+  + +I  GL+ 
Sbjct: 116 YIFSNGGREAMEYLAARKLNPKIIKDNELGFAPNKWNELNDHLISKGYELKDLIALGLVK 175

Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGKNLY 249
           +  +    YD FRNR+IFPI S  G++IAFGGRTL   +   KY+NSP+T +F KGKNLY
Sbjct: 176 E--SENGQYDVFRNRIIFPIYSPTGKIIAFGGRTLENNKEVPKYINSPDTPIFKKGKNLY 233

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309
                         +       ++ +L+EGYMDVLS    G    ++ LGTALTE Q +L
Sbjct: 234 GL-----------ERGSMIKKKNYAMLMEGYMDVLSGYLYGFDVALAPLGTALTEEQGKL 282

Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
           L + +  I+L FD D  G  A  ++  ++      G  +  ++L   +DPD +++ YGK 
Sbjct: 283 LKRYTSNIILSFDSDAAGQSATERSGMILKTL---GFNIRVLVLEGAKDPDEYLKLYGKE 339

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
           +F K +  S+ + D L+K  ++    +    +       K     +     +  Y   + 
Sbjct: 340 SFLKCVKNSVEIFDFLFKYYSKEYDLSNMMSKQNFINRFKEFFQSVDTDLEKSLYLDKLS 399

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            +L               R   +           +    S  +     +  S  E   L 
Sbjct: 400 KQLNIEKDILKETLIDKNRKKSR-----------KIEEVSENISISREEAASKLEELTLG 448

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            ++      +    +           +K++ +L     E       + +  L +    E 
Sbjct: 449 LILAKNEYFEYFKNKNIKGSLT----RKVFQYLKERDEESNIVRELKDNVELTKAETDE- 503

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-------KEEIEKQI 602
               +  +  A    ++ E     + + +     +  + +  +R+        + IE ++
Sbjct: 504 ---WEIVICMAINDFSSEERTNKLLEEIFISWFRIELKEKQRNRENISKTIGLKSIELKL 560

Query: 603 AQVTAKGEAEKTAILISILHEV 624
                     K   +     E+
Sbjct: 561 NAADG---FSKILDIYKEYEEI 579


>gi|225851206|ref|YP_002731440.1| DNA primase [Persephonella marina EX-H1]
 gi|225646354|gb|ACO04540.1| DNA primase [Persephonella marina EX-H1]
          Length = 548

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 155/589 (26%), Positives = 257/589 (43%), Gaps = 53/589 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    D I+++     + ++I +Y++ ++  +N     Y A CPFH EKTPSF  +  K 
Sbjct: 1   MAISPDTIEEVRRTANVYDVISEYINLEKAGSN-----YKALCPFHSEKTPSFIVSPQKN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            + CF C   G  LSFL    G SF E+V +LA    +P+       EK  +    L  +
Sbjct: 56  IFKCFGCGKSGTALSFLMDYEGISFSEAVIKLAQKYNIPVKYT--GTEKNYEHLKGLFSV 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            E    F+   LKN+  K +  YL +R + S   + F LGY+P++   + +  + +G   
Sbjct: 114 TEKIAKFYKDQLKNS--KDVREYLKKREVLSSTADHFDLGYSPENPQLIIDFCKSEGIDL 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           EK+ E G++ + D+  +  DRFR RLIFPIR  RG+V+AFGGR L +    KY+NSPET 
Sbjct: 172 EKLKEVGVVTERDDE-SIVDRFRGRLIFPIRDHRGRVVAFGGRALRESHQPKYINSPETE 230

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           ++ KGK LY FF + +YL++             +++VEGY+D++SL Q GV+NVV++LGT
Sbjct: 231 IYSKGKVLYGFFESKDYLREKKW----------VVIVEGYLDLISLYQTGVKNVVATLGT 280

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A TEY   LL K   + VL FD D  G +     I      L     V + L+  G+DPD
Sbjct: 281 AFTEYHGDLLKKFVNKAVLMFDSDKAGKK---AVIRASKILLSKNIDVYYALIEDGKDPD 337

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              +  G  A E  + ++   +D L  R  +        ++ E+     + ++ I ++  
Sbjct: 338 DLAK-QGYKAVENTLKKAENFLDFLLNRIKDE---KELKKKGEIIDLYLDMVSVIPEKTK 393

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    + + +           +                     +    +   + K +   
Sbjct: 394 QGLLIKKLSEETGLQESYLELK---------------------KSSTATETEEVKFTDYL 432

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           S  E  +L TLI     L  ++     I    N     +  L    +  +    E + + 
Sbjct: 433 SKTEKLILKTLITKKDELLSRFDRFDKIEGSGN-----FEILVRAILNNEELEEEVLEEI 487

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           L      ++   +    R    W        + +     +   +  +  
Sbjct: 488 LQSEEIVDVDAAVYALERKYRAWLKKENELYLSINSDPDEEFLIKLQEE 536


>gi|148284624|ref|YP_001248714.1| DNA primase [Orientia tsutsugamushi str. Boryong]
 gi|146740063|emb|CAM80187.1| DNA primase [Orientia tsutsugamushi str. Boryong]
          Length = 591

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 170/549 (30%), Positives = 269/549 (48%), Gaps = 45/549 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M     F +++   + +S ++ Q V   +R      G+Y   CPFH EKTPSF  ND K 
Sbjct: 1   MRSTNFFYENIRTILNVSTIVKQKVTLIKRG-----GEYVGICPFHSEKTPSFTVNDRKK 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF C   GD + F++   G S+ ES  RLA   G+ +P+   + EK  +    +   
Sbjct: 56  FYHCFGCSAHGDVIKFVADTSGLSYRESALRLAQENGIDIPIFSKEQEKLYEEIDIIHNT 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A +FF  SL       +  YL +RG+    IE +K+GYAP  +  L+E L  +G   
Sbjct: 116 LELAQNFFIASL----SNDIRSYLYDRGLSDLQIEKYKIGYAP-GKNLLQEFLEMRGIPL 170

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             I+++GL I  +++  SY+ FR+R++FPI +   + I FGGR ++     KYLNSPET 
Sbjct: 171 AFIVKSGL-IAKNDNGQSYEIFRDRIMFPIINLANKTIGFGGRVINNNSQPKYLNSPETA 229

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY    A +++    R           I+VEGYMD+++L   G+   V++LGT
Sbjct: 230 VFKKNEALYGEDIATSHIYSKNRA----------IVVEGYMDLIALQSQGIYETVATLGT 279

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE  L  LW++   I+LCFDGD  G RA  +A+  VL H+     ++F++L  G DPD
Sbjct: 280 ALTEKHLHKLWQICDEIILCFDGDQAGNRAIQRAVIKVLPHISCSQSMSFIMLPDGLDPD 339

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++ +G T F+KLI   L + + LW+ ET  + F+T + +A+LE  + N I  IKD  L
Sbjct: 340 QLLKQHGITQFQKLIDTRLAVSETLWRLETNGKVFSTAESKAQLEKKINNYIKEIKDWIL 399

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y    + +  QL            R+   N+    QK           ++  L    
Sbjct: 400 IKNYQTYFKQKYWQL-----------NRFNSNNSYFDKQKLNLNTPTSKEYLEYLLLSL- 447

Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                     +++ P +L +    +   ++ + N E      +L        + L + I 
Sbjct: 448 ----------IVHFPELLNDDVIAENFVNLEFCNKEAYNARKWLIDSISGNNFSLLDSIK 497

Query: 539 QRLCERGFG 547
             + E    
Sbjct: 498 TDITESILK 506


>gi|147669172|ref|YP_001213990.1| DNA primase [Dehalococcoides sp. BAV1]
 gi|146270120|gb|ABQ17112.1| DNA primase [Dehalococcoides sp. BAV1]
          Length = 588

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 148/625 (23%), Positives = 273/625 (43%), Gaps = 60/625 (9%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS- 66
           ++++   + I + IGQY    +             CPFH EK  SF        ++CF  
Sbjct: 5   VEEIKQKLDIVSFIGQYTKLTKAGR-----TMRGICPFHSEKHGSFFVYPEAQNWHCFGA 59

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126
           C+  GD  +F+    G  F  +++ LA  AGV LP         +  +  L  +   A  
Sbjct: 60  CNTGGDIFAFVMKKEGLDFKAALELLAEKAGVSLP--SQINPAIKDQRDRLYEINLSAAQ 117

Query: 127 FFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
           ++H+  L + + +    YL+ RG++  ++  F+LGYA      L ++L+++ +S+E +++
Sbjct: 118 YYHNLLLNSPQAENARIYLNSRGLNEQSLADFQLGYALADWQGLYDYLKERSYSDEDLLK 177

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
           AG+ I   +    +DRFRN +I+PI + +GQ+  FG R +      KY NSP+T LF K 
Sbjct: 178 AGV-IVRSDEGRIHDRFRNNIIYPIANYKGQIAGFGARVM-DNSQPKYRNSPQTDLFDKS 235

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
             LY    A   ++++ R           I+VEGYMD +   Q G  N V+ +GTALTE 
Sbjct: 236 SLLYGLHLASASIRENNRA----------IIVEGYMDAIMSHQGGFTNTVACMGTALTER 285

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
           Q+ L+ + +  +VL  D D  G  A  +AID         + +   +   G+DPD  IR 
Sbjct: 286 QIALIKRQTKNLVLGLDSDSAGEEATLRAID---YENQMESEIRVAVPEGGKDPDELIR- 341

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
           +   ++++++  + PL+D +++        N+   +++L  HL   I+ ++D   + +Y 
Sbjct: 342 HSPQSWQEILDNARPLLDYIFEHSQRGLDLNSAAGKSKLADHLLPIISKMEDGVRQSHYL 401

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             + + +    Q  I E     +   +NA+  +++ PS +  ++              E 
Sbjct: 402 GKLAEIVSTS-QNRILERLKKLKNETRNAKVTEKEAPSGQAPKNPA-----------LEE 449

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L  L     + +  Y  L     +  + ++L   +++   E              +  
Sbjct: 450 YALSLLFTSAEVTRFAY-NLHPEYLEIPQYRELL-AIYNQSAE--------------KDN 493

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQ 604
               L +  R+  D  +       NI D  + Y   L L +R  R L+ +  +   +I Q
Sbjct: 494 LRPCLDENLREYYDNLMNKNPANDNIED--KFYDLCLRLRERYLRNLAVKLNQALSEINQ 551

Query: 605 VTAKGEAEKTAILISILHEVHIQIH 629
                   +   L     +V+ ++ 
Sbjct: 552 PETT----EYQALNDQCVKVNEELR 572


>gi|189183186|ref|YP_001936971.1| DNA primase [Orientia tsutsugamushi str. Ikeda]
 gi|189179957|dbj|BAG39737.1| DNA primase [Orientia tsutsugamushi str. Ikeda]
          Length = 591

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 171/549 (31%), Positives = 268/549 (48%), Gaps = 45/549 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M     F +++   + +S ++ Q V   +R      G+Y   CPFH EKTPSF  ND K 
Sbjct: 1   MRSTNFFYENIRTILNVSTIVKQKVTLIKRG-----GEYVGICPFHSEKTPSFTVNDRKK 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF C   GD + F++   G S+ ES  RLA   G+ +PV   + EK  +    +   
Sbjct: 56  FYHCFGCSAHGDVIKFVADTSGLSYRESALRLAQENGIDIPVFSKEQEKLYEEIDIIHNT 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+A +FF  SL       +  YL +RG+    IE +K+GYAP  +  L+E L  +G   
Sbjct: 116 LELAQNFFIASL----SNDIRSYLYDRGLSDLQIEKYKIGYAP-GKNLLQEFLEMRGIPL 170

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             I+++GL I  +++  SY+ FR+R++FPI +   + I FGGR ++     KYLNSPET 
Sbjct: 171 AFIVKSGL-IAKNDNGQSYEVFRDRIMFPIINVANKTIGFGGRVINNNSQPKYLNSPETA 229

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY    A +++    R           I+VEGYMD+++L   G+   V++LGT
Sbjct: 230 VFKKNEALYGEDIATSHIYSKNRA----------IVVEGYMDLIALQSQGIYETVATLGT 279

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE  L  LW++   I+LCFDGD  G RA  +A+  VL H+     ++F++L  G DPD
Sbjct: 280 ALTEKHLHRLWQICDEIILCFDGDQAGNRAMQRAVIKVLPHISCSQSMSFIMLPDGLDPD 339

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++ +G T F+KLI   L + + LW+ ET  + F+T + +A+LE  + N I  IKD  L
Sbjct: 340 QLLKQHGITQFQKLIDTRLAVSETLWRLETNGKVFSTAESKAQLEKKINNYIKEIKDWIL 399

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y    + +  QL            R+   N+    QK           ++  L    
Sbjct: 400 IKNYQTYFKQKYWQL-----------NRFNNNNSYFDKQKLNLNIPTSKEYLEYLLLSLI 448

Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +           + P +L +    +   ++ + N E      +L        + L + I 
Sbjct: 449 A-----------HFPELLNDDVIAENFVNLEFCNKEAYNARKWLIDSISGNNFSLLDSIK 497

Query: 539 QRLCERGFG 547
             + E    
Sbjct: 498 TDITESILK 506


>gi|328955628|ref|YP_004372961.1| DNA primase [Coriobacterium glomerans PW2]
 gi|328455952|gb|AEB07146.1| DNA primase [Coriobacterium glomerans PW2]
          Length = 664

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 141/679 (20%), Positives = 269/679 (39%), Gaps = 86/679 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              +    +     +  L+ + V+  +R       ++W CCPFH EKTPSFH   S   +
Sbjct: 2   ITDEDKDRVRAATDLVQLVQETVEVRQRG-----QEFWCCCPFHGEKTPSFHIIPSTQVW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C + GD  +++      SF ES++ LA  AG+ L     +       ++ ++ + E
Sbjct: 57  HCFGCGLGGDCFAYIMHRENLSFPESIRFLAERAGIELEERGERSS-SGTKRSRIMDVCE 115

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               F+H  L   +D R   Y   RGI     + ++LG+AP    +L  HL   G++  +
Sbjct: 116 ATASFYHTLLMRGKDGRARDYFRSRGIGREVCQRYRLGFAP-GHGALVAHLGGAGYTPHE 174

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +++A +     + +   DRF +R+IFPI   +G+ IAFGGR + +G+  KYLN+ ET +F
Sbjct: 175 MVDANVA-LARDGSGLIDRFFDRVIFPIFDEQGRCIAFGGRIMGEGQP-KYLNTAETSIF 232

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           HK +NLY F  A  ++               +I+VEGY D ++  +AG++NVV++LGTAL
Sbjct: 233 HKKRNLYGFNWAKEHVVAKA----------EVIVVEGYTDAIACYEAGIRNVVATLGTAL 282

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE+ ++ L + + R++  F   D        A   +         +   +L    DP  F
Sbjct: 283 TEHHVKTLTRFAKRVIYLF---DGDAAGQAAAERALRFIERDSIDLRCAILPDNLDPMEF 339

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +   G  A  + +  S  L+  ++++  E  +  TP  R +        I  +++  +  
Sbjct: 340 VTERGGEALRERLDRSEELLAFVFRKLEEKSNLGTPAGRVKALEDGCRLIFPLRESYMVD 399

Query: 423 YYSQAIRDRLQQLFQKYI-------TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            Y   I D +                +     +  ++    R          +S + +  
Sbjct: 400 AYYMRIADLVGLDIAAVRNSAARVFQQIQHEKQVAQRRDGQRVHMLSPSTRKRSDVDRAA 459

Query: 476 LSKKPSLR-------------------------------------------EAALLLTLI 492
            + +                                               E  L+  L 
Sbjct: 460 RTTRIEPDFAERELADSLEAHGASPSAMASDRGVGERPTCLSDLERRALVGERELISLLT 519

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
            +P + +   + +  I + ++  + +   + +     +  +     + +C +        
Sbjct: 520 LYPDMFRPFAERITQIEWVDSRHEAIAWAILATPSGSEPSVVMAAARAVCPQ-------- 571

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
              QV   G  S+T+             AL LY     + R+    + Q+ Q     +A+
Sbjct: 572 -ADQVAAGGTISSTSVHPTETNIAFLLDALELY----TVRRRLRATQAQLRQDRCS-QAD 625

Query: 613 KTAILISILHEVHIQIHQI 631
           +   L+    +   ++ ++
Sbjct: 626 ERRELMIRASQDTERLREL 644


>gi|157165046|ref|YP_001466239.1| DNA primase [Campylobacter concisus 13826]
 gi|112801530|gb|EAT98874.1| DNA primase [Campylobacter concisus 13826]
          Length = 572

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 143/606 (23%), Positives = 247/606 (40%), Gaps = 46/606 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I+ L   I I N+I QY+   +  +      Y   CPFHD+K PS   N +K  Y
Sbjct: 4   IDPKSIEKLKNQIDIVNIIEQYIPVKKMGS-----SYKCVCPFHDDKNPSMSINQNKQMY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRLI 121
           +CF+C   GD + F+      ++ E+++++A I+   L    D    +KE        ++
Sbjct: 59  HCFACKAGGDAVKFVMDYEKLTYPEAIEKIAQISNFSLEYTNDKVPTQKENKH-----IL 113

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E A  F+              Y+  RGI+   IE F+LG+A DS+ ++R     +  + E
Sbjct: 114 EKANAFYRSEFYKNEAA--LRYIKSRGINDAMIEKFELGWAGDSKSTVRLL---QNENIE 168

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
                 + I   N    Y  F  R+ FPI S   +++ FGGRT+      KY+NSP++ +
Sbjct: 169 PKEALEVGIVKQNEKGIYASFIERITFPIYSHTTRLVGFGGRTI-SDHPAKYVNSPQSAV 227

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K K LY +  A   +             + II+ EGY+DV+ L  AG  N V+ LGTA
Sbjct: 228 FDKSKLLYGYHLARQSI----------FEKNQIIITEGYLDVIMLHYAGFTNAVAVLGTA 277

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT   L LL +    +VLCFDGD  G+ AA K+  L     I       V++S G DP  
Sbjct: 278 LTTSHLPLLKRGEISVVLCFDGDGAGINAAIKSAHL---LSINKIDTKVVIISNGADPAD 334

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +         +L       V    ++  +      P +R      +K  ++ + ++ + 
Sbjct: 335 MVFAGKIKELNELFGSGEDAVKFYIEKIMQKYDITRPVQRDNCLSEIKAYMDELGEE-IA 393

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK--K 479
             Y   +  R     Q          +   +    R+ +   +    +S++  ++     
Sbjct: 394 SSYVTEVAARFNLTPQSVADRFGLKQKPKNEAKFKREFRKKEKDEFSNSVMVDEVPAVMN 453

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIH 538
               E AL  T++N+P    E   +L    +  + E     + +   +        E + 
Sbjct: 454 KDPLEFALFKTMLNNPNYRDEILSKLGARYFIKHPEY---LNAILYRY---DVSDEEMVR 507

Query: 539 QRLCERGFGELLK--QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + L +    E++    L + + +  +     E  I+       +   L K    L    +
Sbjct: 508 EILMDENIHEIIDPTTLQKAILNMQIAFYENEQQILKGSDNPNKIEILEK----LLFIIK 563

Query: 597 EIEKQI 602
           +++ Q+
Sbjct: 564 DLKTQL 569


>gi|294649578|ref|ZP_06726997.1| DNA primase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824517|gb|EFF83301.1| DNA primase [Acinetobacter haemolyticus ATCC 19194]
          Length = 625

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 157/685 (22%), Positives = 272/685 (39%), Gaps = 123/685 (17%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+  I  +L    I +LIGQ V   +         Y  CCPFH EKTPSFH    K 
Sbjct: 1   MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115
           +Y+CF C   G+ + FL  +   +FI+ ++ L+   G+ LP  +   +K    ++     
Sbjct: 56  YYHCFGCQANGNAIRFLMDIDSRNFIDVMKDLSNQTGIELPKDNHDNKKLSYKRSPQTPP 115

Query: 116 --------------DLIRLIEV-------------------------------------A 124
                          +   ++                                       
Sbjct: 116 SPPEKISPPSTTDHAIHEPMDEHFVDMDRFMDDPFAQFDPGFGMDEQVQEGNLYDLLENV 175

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
             F+   L     ++   Y   RG+ +  I+ ++LGYAP+       HL +    + + +
Sbjct: 176 AQFYERQL--PHSQKAQNYFKHRGLSAQTIQFWRLGYAPEDWQ----HLEKAFPQDIEGL 229

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
           +   LI   +S   +D  R+R+IFPIR  +G+V+ FGGR L+     KY+NSP++ +FHK
Sbjct: 230 KQIGLIRSSDSGRDFDLLRDRVIFPIRDHKGRVVGFGGRALNDDIKPKYINSPDSEIFHK 289

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            + LY  +                  ++  ++VEGYMDV++L Q G+   V++LGTA   
Sbjct: 290 NQLLYGLYEGRKL------------KANDWLMVEGYMDVIALQQYGINGAVATLGTASNA 337

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             L  L+K + RI + FDGD  G +AA + +++ L  L  G  + F +L    DPDS IR
Sbjct: 338 DHLNTLFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNEHDPDSLIR 397

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYY 423
             G   F+KL+ ++  L D ++   T     +TP+ ++ +   L+     +      RY 
Sbjct: 398 REGLENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYL 457

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +Q+ R++L    +            +  + +                            
Sbjct: 458 LTQSFREKLGLGKRFTPQISHDASLSFNIHTKD--------------------------- 490

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E   +  L++HP  L   ++EL  +   N  L K+ + L   F        +E+      
Sbjct: 491 EDFAIAILMHHP-FLYIHFEELRAVIDQNEPLAKILAALNIVF--DDLPDDQELATYYVL 547

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   +L   ++   + S T      +V     +  +L  + + L  + +     I 
Sbjct: 548 GACSHYSHELADIMQRTNIESLTE---APEVADKLARDFSLNLQEKYLRLKLKSPISLI- 603

Query: 604 QVTAKGEAEKTAILISILHEVHIQI 628
                    ++  L   L+E+  QI
Sbjct: 604 ---------ESRNLRQQLNELTKQI 619


>gi|260494275|ref|ZP_05814406.1| DNA primase [Fusobacterium sp. 3_1_33]
 gi|260198421|gb|EEW95937.1| DNA primase [Fusobacterium sp. 3_1_33]
          Length = 602

 Score =  284 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 156/615 (25%), Positives = 269/615 (43%), Gaps = 31/615 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y ++ I  LL ++ I  ++G++++  +  +      Y   CPFH +  PSF  N  K 
Sbjct: 1   MYYKQEDIDKLLDNLKIEEVVGEFIELKKVGS-----SYKGLCPFHADTNPSFSVNPEKK 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              CF C   G+ ++F S +   S+ E+++ L+    + +           +      ++
Sbjct: 56  ICKCFVCGSGGNAINFYSKIKNISYTEAIRELSKKYKINIKEYSNTNI--NENYEKFYQI 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E + +FF   + +   +    YL  RG+D++ I+  +LGYAP     L E L  KG+++
Sbjct: 114 MENSHNFFMEKIFSQDSRGALEYLSNRGLDTNLIKEHQLGYAPPKWSELYEFLNSKGYND 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
           E ++  GL I        YD FRNR+IFPI S  G++IAFGGRTL K  S  KY+NSP+T
Sbjct: 174 EDLLALGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRTLEKDNSVPKYINSPDT 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGKN+Y    A+N   K           ++ IL+EGYMDVLS    G    ++ LG
Sbjct: 233 PIFKKGKNVYGIERAINIKNK-----------NYSILMEGYMDVLSANIFGFDTSIAPLG 281

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q +L+ + S  I+L FD D  G+ A  +A          G  +  +     +DP
Sbjct: 282 TALTEEQAQLIKRYSSNILLSFDMDKAGISATERA---SFILKSQGFNIRVLQFEGSKDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D F++  GK AF K++  SL + D L+   +     N    +       K+  ++I++  
Sbjct: 339 DEFLKKNGKEAFLKVVENSLEIFDFLYNLYSSEYDLNNIMAKQNFIERFKDFFSNIENDL 398

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y + + +++               R        R              ++ K  K+
Sbjct: 399 EKEMYLKKLSEKIDISID--------ILRKPLIEKNKRHIVKKDYFDENQEKIEKKEFKQ 450

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +  E A++  L+  P       +E  +    N   +     +  +       + +E   
Sbjct: 451 ANNLEMAIVKMLLRKPEYYNFFKEEKLESDIANKIFKFFNQKIKENLFFDSNTIMKEFKN 510

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            + E       ++ +   R    + +T +    +             + +L  + K++I 
Sbjct: 511 YIEESNEFSQYEKNNELARIIMDYISTPDQIEEERENTELFKSYFRVKVKLRDKTKDDIN 570

Query: 600 KQIAQVTAKGEAEKT 614
           K++     K E EKT
Sbjct: 571 KKVKFGKLKKEIEKT 585


>gi|15834795|ref|NP_296554.1| DNA primase [Chlamydia muridarum Nigg]
 gi|270284961|ref|ZP_06194355.1| DNA primase [Chlamydia muridarum Nigg]
 gi|270288986|ref|ZP_06195288.1| DNA primase [Chlamydia muridarum Weiss]
 gi|301336359|ref|ZP_07224561.1| DNA primase [Chlamydia muridarum MopnTet14]
 gi|9910826|sp|Q9PLC9|PRIM_CHLMU RecName: Full=DNA primase
 gi|7190211|gb|AAF39049.1| DNA primase [Chlamydia muridarum Nigg]
          Length = 600

 Score =  284 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 153/614 (24%), Positives = 259/614 (42%), Gaps = 43/614 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + ++ L   I I +++G+YV   R        DY ACCPFHDEKTPSF    ++G
Sbjct: 1   MYYTEESLETLKHSIDIVSVLGEYVHLKRSGA-----DYKACCPFHDEKTPSFIVYPTRG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK-EKIQTDLIR 119
            Y+C+ C   GD ++FL    G SF E+V  LA    V L +     E   +  +  L R
Sbjct: 56  HYHCYGCGEHGDAINFLMKQQGYSFSEAVLFLAKKFHVDLVIKTKTKESSGQDSKECLRR 115

Query: 120 LIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + + A  FF + L           YL +RG     I+ F++GYAP+ R  +R     +G 
Sbjct: 116 INKEAERFFQYCLLCLPEGGEALSYLYKRGFSLDTIDRFQIGYAPEQRVFVRAMEE-RGI 174

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237
           S +++  AG L            F  R++FPI+ S G  I F  R   + G+  KY+NSP
Sbjct: 175 SVKQLEWAGYLSKDWFL------FAQRIMFPIQDSLGYTIGFSSRRFKEGGKGGKYINSP 228

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET+LF K + LY    +   + K  R          +ILVEG  D L +   G    +++
Sbjct: 229 ETLLFKKSRVLYGLQFSRKRIAKEKR----------VILVEGQADCLQMIDFGFNCTLAA 278

Query: 298 LGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            GT+ TE  ++ L      +  L FDGD  G +A+ +  DL       G  V    L  G
Sbjct: 279 QGTSFTETHVKELVKLGVSKAYLLFDGDAAGEKASLRVGDLCQV---AGIAVIVCRLPSG 335

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPDSF+   G     +L+      +  L   +  +    TP E+A +   +   + H  
Sbjct: 336 QDPDSFLMQRGPEELRELLDRGEDYLSFLVWHKIRSYEQFTPREKARVVEEVIQQVQHWG 395

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG--PSQRLMQSSLVKG 474
              + + Y + +   ++      ++  S      +   +  D K   P       +   G
Sbjct: 396 SPIMIHEYLRQLASLVKVPEAAVLSYLSSIKSATEDKGKKADAKEVCPDPEATAVAYKGG 455

Query: 475 KLSKKPSLR---EAALLLTLI-NHPA---ILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           K SKK S R   EA ++  L+   P    +       L+   +   E + ++    + + 
Sbjct: 456 KASKKISPRMILEADVIRCLLFAKPEEEFVPATVRHYLSPEEFHCIEYRSIFVMAMNHYN 515

Query: 528 EQKYF-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           E+      +++   +       LL  +DR++    +     +A    + + ++       
Sbjct: 516 EKHMLPSMDDMMALVWGTEAMTLL--VDRRINTELMRDIVVQAIQKLLDKHWRD--RKRN 571

Query: 587 RFRLLSRQKEEIEK 600
               + ++ + +++
Sbjct: 572 FCHQMGKELDSLQE 585


>gi|226953432|ref|ZP_03823896.1| DNA primase [Acinetobacter sp. ATCC 27244]
 gi|226835815|gb|EEH68198.1| DNA primase [Acinetobacter sp. ATCC 27244]
          Length = 625

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 155/687 (22%), Positives = 271/687 (39%), Gaps = 127/687 (18%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+  I  +L    I +LIGQ V   +         Y  CCPFH EKTPSFH    K 
Sbjct: 1   MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115
           +Y+CF C   G+ + FL  +   +FI+ ++ L+   G+ LP  +   +K    ++     
Sbjct: 56  YYHCFGCQANGNAIRFLMDIDSRNFIDVMKDLSNQTGIELPKDNHDNKKLSYKRSPQTPP 115

Query: 116 --------------DLIRLIEV-------------------------------------A 124
                          +   ++                                       
Sbjct: 116 SPPEKISPPSTTNHAIHEPMDEHFVDMDRFMDDPFAQFDPGFGMDEQVQEGNLYDLLENV 175

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
             F+   L     ++   Y   RG+ +  I+ ++LGYAP+       HL +    + + +
Sbjct: 176 AQFYERQL--PHSQKAQNYFKHRGLSAQTIQFWRLGYAPEDWQ----HLEKAFPQDIEGL 229

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
           +   LI   +S   +D  R+R+IFPIR  +G+V+ FGGR L+     KY+NSP++ +FHK
Sbjct: 230 KQIGLIRSSDSGRDFDLLRDRVIFPIRDHKGRVVGFGGRALNDDIKPKYINSPDSEVFHK 289

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            + LY  +                  ++  ++VEGYMDV++L Q G+   V++LGTA   
Sbjct: 290 NQLLYGLYEGRKL------------KANDWLMVEGYMDVIALQQYGINGAVATLGTASNA 337

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             L  L+K + RI + FDGD  G +AA + +++ L  L  G  + F +L    DPDS IR
Sbjct: 338 DHLNTLFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNEHDPDSLIR 397

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYY 423
             G   F+KL+ ++  L D ++   T     +TP+ ++ +   L+     +      RY 
Sbjct: 398 REGLENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYL 457

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +Q+ R++L    +            +  + +                            
Sbjct: 458 LTQSFREKLGLGKRFTPQISHDASLSFNIHTKD--------------------------- 490

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E   +  L++HP  L   ++EL  +   N  L K+   + +   +      E     +  
Sbjct: 491 EDFAIAILMHHP-FLYIHFEELRAVIDQNELLAKIL-AVLNIVFDDLPDDQELATYYVLG 548

Query: 544 RG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
               +   L  + ++     L  A       +V     +  +L  + + L  + +     
Sbjct: 549 ACSHYSHELADIMQRTNIESLTEAP------EVADKLARDFSLNLQEKYLRLKLKSPISL 602

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQI 628
           I          ++  L   L+E+  QI
Sbjct: 603 I----------ESRNLRQQLNELTKQI 619


>gi|257784628|ref|YP_003179845.1| DNA primase [Atopobium parvulum DSM 20469]
 gi|257473135|gb|ACV51254.1| DNA primase [Atopobium parvulum DSM 20469]
          Length = 655

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 146/659 (22%), Positives = 255/659 (38%), Gaps = 86/659 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              +  + +        L+ + V+   R       DYW CCPFH EK+PSF  N S G +
Sbjct: 2   ITDEDKERVRQATDFVTLVSETVELKPRG-----QDYWGCCPFHQEKSPSFKINPSTGLW 56

Query: 63  YCFS-CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           +CF  C   GD  S++       F ++++ LA  AG+ L         K   +  LI  +
Sbjct: 57  HCFGACSEGGDVFSYVMKRENLDFPDAIRYLADKAGITLSEEAHVS--KGPRKNRLIECL 114

Query: 122 EVATDFFHHSLKNARD---KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             A ++FH  L   R    +    YL  RG  +   + +KLGYAP  R +L  HLR+ GF
Sbjct: 115 TEAENYFHSMLMRGRGEGPETARAYLSGRGFGAGVCKRWKLGYAP-GRGALVAHLRKCGF 173

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSP 237
           + ++++ A L ++ +   +  D F +R++FPI   +G+ IAFGGR T     + KYLN+ 
Sbjct: 174 TTQEMVAANLAVERNGRIS--DWFYDRVMFPIHDEQGRTIAFGGRITKKVENAPKYLNTR 231

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           +T +F+KGK+L+ +  A   +             S  I+ EGY DV+++ +AG  N V++
Sbjct: 232 DTTVFNKGKHLFAYDVAKETIAAQ----------SEAIICEGYTDVIAMHEAGFTNTVAA 281

Query: 298 LGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           LGTA T   ++L+  + + +I+  FDGD  G  AA     ++            V+L   
Sbjct: 282 LGTAFTSEHVKLIDRQRARKIICMFDGDAAGQHAA---ARVIKFIDKTTAAFLCVVLPNN 338

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DP  F+   G      ++  + PL+D ++   T     + P  R +    L + +  +K
Sbjct: 339 QDPMEFLAESGAEKLRPILDSARPLMDFVFDATTAEFDLSVPGGRVKALEALASLLAPLK 398

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              L   Y+  + D L    ++              +     +    Q    S      L
Sbjct: 399 TSVLLSEYALRVADLLHIDAEEAKRAIKAAPIQDDASNFRTSKSARKQSQKMSYNTSNNL 458

Query: 477 SKKPSLR--------------------------------------------EAALLLTLI 492
           +   S                                              E  LL  + 
Sbjct: 459 TYTKSPVYVEAPSYDEVPPYDEASTYDVPADVRVPSGTQGLSAEDRRQVNSELELLSAMA 518

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
            + ++++E    +AD  + +   Q +   + +   E              E     +L  
Sbjct: 519 TNLSLVREYQDRIADFVWADARHQTMAWAMLATP-EGATPAQVVAAAVAVEPNAAAILSS 577

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
                   G   +   ++     +     +     +  + R+  EI   +   +  GE 
Sbjct: 578 --------GRVISEGNSDTRRSLEFIVDTVD----YYSVQRKLREIRSNLRSGSYTGEQ 624


>gi|108804339|ref|YP_644276.1| DNA primase [Rubrobacter xylanophilus DSM 9941]
 gi|108765582|gb|ABG04464.1| DNA primase [Rubrobacter xylanophilus DSM 9941]
          Length = 583

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 155/652 (23%), Positives = 248/652 (38%), Gaps = 88/652 (13%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF--HDEKTPSFHCNDS 58
           M   R  I++L   + I  +  ++    R+        +   CP+  H EKTPSF  +  
Sbjct: 1   MRISRQSIEELREAVDIVEVASEFTALRRQGA-----RFVGLCPYPDHQEKTPSFSVSPD 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTD 116
           KGFYYCF C   GD +  +  L    F E+V  LA    + L           +   +  
Sbjct: 56  KGFYYCFGCSRGGDAIKLVEELKSLPFAEAVAHLAERYNIELRFEGATEPSRDRANRRRA 115

Query: 117 LIRLIEVATDFFHHSLKNARDKRL---HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + + +  A  ++H  L     +       YL  RGI S  IE F+LG+AP S        
Sbjct: 116 IHKALAAAAVYYHKVLLKMPSQETERARRYLAGRGISSSTIEEFRLGFAP-SSGGFVRAA 174

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            + G   E +  AGL           +RF  R+ FPI   RG+++ FG R L +G   KY
Sbjct: 175 ARLGLGREVLEAAGL-----LGRGGRERFAGRITFPISDRRGRIVGFGARVLGEG-GPKY 228

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSPET +F K   LY F   +  +++              ++VEGY DVL L QAG++N
Sbjct: 229 LNSPETEVFDKRNLLYGFPQVMEAMRR----------ERSALVVEGYTDVLMLHQAGIKN 278

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V++LGTA+T   LRLL   +  I + FD D  G +A  +A+       +    +     
Sbjct: 279 AVATLGTAITPSHLRLLSGYADEIYMLFDPDAAGEKAVERAVAAASELKLGLKVLRLP-- 336

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              EDP  ++R +    F +L+  + P +  +++R+ E         RA     +K  + 
Sbjct: 337 ---EDPADWLRGHAGEEFVRLLPGAEPALHYVFRRKAERARSADTVGRARALEEMKGLVA 393

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            I+D   R+   +   + L           +G       +A                   
Sbjct: 394 RIEDPVFRHEALRLASEALGVAPHALFAAGAGRAERQPASA------------------- 434

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQE------------LADIRYDNNELQKLWSF 521
           G L          +L T++  P +  +  +E            L    +  +   +L+  
Sbjct: 435 GGLRDPYEEAGRDVLATMLARPDLAADLLREGVAVPGLGAPLRLVPEDFATDRQGRLFGL 494

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L      +     + +      R F +LL  L                    ++     A
Sbjct: 495 L----QRRPGVALDRLVVDEELRPFVDLLASLSE--------------AGERLQPSAASA 536

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             L+ R  +LSRQ+++      Q       E     I +L E    I   E+
Sbjct: 537 RELWLRLGILSRQRKK-----RQTDDISRKETLQAEIQLLREAQRSIASREA 583


>gi|329769785|ref|ZP_08261186.1| hypothetical protein HMPREF0433_00950 [Gemella sanguinis M325]
 gi|328838147|gb|EGF87765.1| hypothetical protein HMPREF0433_00950 [Gemella sanguinis M325]
          Length = 599

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 141/633 (22%), Positives = 262/633 (41%), Gaps = 44/633 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              +  I  +  +I I +L+ +Y+  ++R  N     Y   CPFH+EKTPSF  +  K  
Sbjct: 3   KISKQDIDYIFENIDIVSLVSEYIKLEKRGQN-----YLGLCPFHNEKTPSFTVSPDKKI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119
            +CF C   G+   F+S +   ++ +++ +L    G+ L   D K    +       +  
Sbjct: 58  AHCFGCGKGGNIFQFVSLIENITYNQAIVKLGTRLGLNLESNDNKEVSYDLNNKLDSMYY 117

Query: 120 LIEVATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              +  D++++ L N ++ +    YL +RG+    I+ F +GYAP          +    
Sbjct: 118 GHLLLADYYNYILLNTKEAQGALNYLIDRGLSIETIKHFNIGYAPRDNNIALNFFKSNNL 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
           + + ++EAGLL   DN+   YD F++R++FPI++++ QV+AF GRT+S+ + V KY N+ 
Sbjct: 178 NLDAMVEAGLLGKNDNND-YYDVFKDRIVFPIKNNQNQVVAFSGRTMSQDKQVAKYYNTH 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +F K   LYNF  A  ++ K             IIL EGYMDV+   Q GV+NVV+ 
Sbjct: 237 ETKIFEKRTVLYNFSDARAFIAK----------EREIILCEGYMDVIKAHQNGVKNVVAL 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT +   +L  +  L  ++ L  D D  G       ID+    +   + V  +  +  +
Sbjct: 287 MGTNIDNNKLVEVLNLVDKVTLSLDNDKAG---TEAQIDIGNRIIQKIDNVYKLKFTGAK 343

Query: 358 DPDSFIRCYGKT----AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
           D D F+            +  +  +             N S +  +++ + +  +   I 
Sbjct: 344 DLDEFLTEKKSKNSEFDTQSYVANNKDHFIKFKIDYCNNESKSNIEQKIKFKNEILKNIA 403

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            I D+ L+Y     + +      Q    E + +     +  +          L +++   
Sbjct: 404 FIGDESLKYILLTYLSEEFDIDRQVLTRELNKFPTRKLRTTQEWTAPEKPLNLFKTTNYD 463

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K+ +        L        A   + + EL   ++D    ++L  +L   +     F 
Sbjct: 464 KKVCR--------LFKYFFVSRAAFIDNFTELEQCKFDQEVFERLIDYLIIYYNNNLDFR 515

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                  +      E++ +L   + +        +    +V + Y       KR   L +
Sbjct: 516 IHNFIHSIENTEDEEVV-RLATYIDETD--FLIEDEPPKEVIRDYIDYFK--KREISLEK 570

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            KE ++  I ++    + E    L+  L E   
Sbjct: 571 LKEMLKIAIQEM----DVEAQKQLLEQLKEYKK 599


>gi|149194635|ref|ZP_01871731.1| DNA primase [Caminibacter mediatlanticus TB-2]
 gi|149135379|gb|EDM23859.1| DNA primase [Caminibacter mediatlanticus TB-2]
          Length = 545

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 140/585 (23%), Positives = 252/585 (43%), Gaps = 63/585 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L   I I ++I  Y++  +  +N     Y A CPFH EKTPSF  + +K  Y
Sbjct: 2   ISKESIENLKSIIDIVDVISNYIELKKTGSN-----YKALCPFHSEKTPSFVVSPAKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+  +   S+ E++++LA +    L                 I L+E
Sbjct: 57  HCFGCGASGDAIKFIMEIEKLSYKEAIEKLATMYNFKLTYTSNNNFLS-------IDLLE 109

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
              +F+   L     K  + YL +RG+    IE F+LGYAP+S     +  +    ++++
Sbjct: 110 KVNNFYKGELYKQ--KEAYEYLKQRGLFDSTIEKFELGYAPESA-KQLKFFKDANLNKKE 166

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +I  G+L++  +    Y R   R+ FPI S  G++IAFGGRT+      KY+N   T +F
Sbjct: 167 LINLGVLVENGD----YPRLIQRITFPIFSQSGKIIAFGGRTI-TNHPAKYINFTNTKIF 221

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           +K K  Y    A  ++ +              I+VEGYMDV+ L QAG++N +++LGTAL
Sbjct: 222 NKSKTFYGLNFAREHILRQ----------KEAIIVEGYMDVIMLHQAGIENSIATLGTAL 271

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T+  L +L K++P++ + +D D  G+ AA KA  L+      G     VL     DP   
Sbjct: 272 TKEHLPILKKINPKVKIAYDSDLAGINAAIKASKLLFSDFFDG---GVVLFPENLDPADV 328

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++  G     K     +P  D +     +  +     E+ +     K  I  +  + L+ 
Sbjct: 329 VKSGG--EINKFFENEIPFSDFIIDFTIKKYNIKNVLEKKKAIDEFKEYIASLP-EILKE 385

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            +S  +  RLQ                        +      +   S      L+KK  +
Sbjct: 386 DFSIKVSQRLQIS---------------------PNMLKAKSKHTISHTQNINLNKKIDV 424

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            EA+++ TL  +   +    + L+   ++    ++    ++ +  E    L   +   + 
Sbjct: 425 AEASIIKTLYENKEWMDNIVEYLSPEMFNT--HKEELQLVYQEDFENPKLLDIVLRDDIM 482

Query: 543 ERGFG----ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
              +     ++++ L    R+  +      +   D +    + + 
Sbjct: 483 TLDYDTLKKQIIRLLIPYYRNKLIQIRFDNSINSDEKAHLMKIIN 527


>gi|325281219|ref|YP_004253761.1| DNA primase [Odoribacter splanchnicus DSM 20712]
 gi|324313028|gb|ADY33581.1| DNA primase [Odoribacter splanchnicus DSM 20712]
          Length = 1305

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 120/462 (25%), Positives = 200/462 (43%), Gaps = 27/462 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P + I  +     I ++IG Y+   ++  N     YW  CPFH EKT SF  + +K 
Sbjct: 1   MQIPPEIIDKIRQAADIVDIIGSYITLKKKGAN-----YWGPCPFHSEKTASFSVSPAKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118
            + CF C   G+  +FL    G SF E+V++L     + +P     P+  +K   +  L 
Sbjct: 56  IFKCFGCGEGGNVFTFLQKYDGLSFPEAVRQLGKKYNIEIPENELTPEELEKIHRRESLQ 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            ++  AT FF    +  +    +            +E + +GYAP S   LR+ L+++G+
Sbjct: 116 VVLRAATHFFR-QHQTDKTAEKYLISRGFTPGDKILEQYHIGYAPAS-NKLRDELQRQGY 173

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK--GESVKYLNS 236
             + + +  L+ D        D+F++R++FPI +  G  I F  R ++    +  KY NS
Sbjct: 174 DLQLLQDNSLIKD--GKNGPEDKFQDRIMFPIFNLTGNPIGFQSRRINDALTKIPKYCNS 231

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
               LF KG  ++  + A   + +             +  VEG  DVL+  +A + N V 
Sbjct: 232 DNNELFCKGSIIFGLYQARGAISR----------EDKVYWVEGQFDVLTFVKAEIPNTVC 281

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
             GTA+TE Q+R L + +  I L +DGD+ G  AA K I      +  G  V  V L  G
Sbjct: 282 GSGTAMTEEQIRTLLRFTRNITLIYDGDNAGQEAAQKNI---TALIEQGAIVRCVKLPTG 338

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDSF R       +K + +        +  E     F+ P+ + +    +   I  ++
Sbjct: 339 EDPDSFARKMNPADLKKYLKK-QEKDFASFLAELNEPHFHDPELKEKCLEEICRLIAFLR 397

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
            + L+  Y + I            ++     +     A  +D
Sbjct: 398 KESLQASYIKNIVKIFDLDEAIIWSKIRETVKSLPAEAYIKD 439


>gi|319789699|ref|YP_004151332.1| DNA primase [Thermovibrio ammonificans HB-1]
 gi|317114201|gb|ADU96691.1| DNA primase [Thermovibrio ammonificans HB-1]
          Length = 543

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 148/601 (24%), Positives = 241/601 (40%), Gaps = 76/601 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                F+++LL  + I +++  Y+D  +   N     + A CPFH EKTPSF  +  K  
Sbjct: 5   KVSHSFVQELLSRVDIVDIVSHYIDLKQSGRN-----FKALCPFHPEKTPSFVVSPEKQI 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C V G+ ++F+       F E+V+R+A IAG+ LP       +++  +  L    
Sbjct: 60  FKCFGCGVGGNAITFVEKYENLPFWEAVKRVAEIAGIELPK---DAFREDSKELHLEETA 116

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
                +F+  L+      +  YL ERGI     + F LGYAP        +LR+     E
Sbjct: 117 YRVAKYFNSKLET-----VLNYLKERGISKETADRFLLGYAPPG------YLRELNLKRE 165

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPETI 240
           +    GL+          + F+ RLI PI +  G+V++F GR L+ G+ + KY+N PET 
Sbjct: 166 EAELLGLVGKNGK-----EFFKGRLIIPIFNHSGKVVSFAGRVLNGGDGAPKYINGPETE 220

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K   LY F+ A   + +             II+VEGY DV+SL QAGV+  V+ +GT
Sbjct: 221 LFKKSNLLYGFYQAKEEVLRK----------REIIVVEGYFDVISLYQAGVRRAVAPMGT 270

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LTE   R + + SP  VL FD D  G +A  +A  +       G     V L  GEDPD
Sbjct: 271 SLTENHARFIKRYSPSPVLLFDADSAGRKATLRAAQIFFSL---GCEPRVVQLPDGEDPD 327

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S  R         L+    P +       +            E+   +        +  L
Sbjct: 328 SMARSRLPE-LLALLESPQPFIKWAVAVASALSREQQALFLKEVGQAIAPLERS--NPFL 384

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y   +               +   +    N                          P
Sbjct: 385 YREYLALLAAEFGIDESWLKVRVAVRRQESHDNGIS-----------------------P 421

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            L E   +  L+     L     E++   + +    +L++ L           P E+  +
Sbjct: 422 PLYEKLFIKALVEGKGSLPI---EVSPNIFISPVSARLYTLL-----SSGGTDPVEL--Q 471

Query: 541 LCERGFGELLKQLD-RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           L      + + +L   +V DA +  +     I ++++  ++ +  + R   L R    +E
Sbjct: 472 LQFPDLADYISELMLLEVTDADINRSLCRVAIKELKRRLKK-VKDFSRKVELKRLIFRLE 530

Query: 600 K 600
           +
Sbjct: 531 R 531


>gi|332672801|gb|AEE69618.1| DNA primase [Helicobacter pylori 83]
          Length = 559

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 147/600 (24%), Positives = 244/600 (40%), Gaps = 53/600 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +N     Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGSN-----YMACCPFHEERSASFSVNQVKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEGYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I  FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D     Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDKKDKIYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDRAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        +  +   +  ++ + +    +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKNWLSHPMAFIEFVLRHMANSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +             +      LV    +     
Sbjct: 393 EYKPLIASLLQAPLHVLGIRERASFQPF--------YPKTEKPNHAQKLVNASSTLSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNN--ELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            E  ++  L+   ++L      +    + +   E   L                 ++   
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQEFDALCQE---------KLDDPKLVAL 495

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L +         L +   +  L           +++  + +L   ++   L + ++ I K
Sbjct: 496 LLDANLP-----LKKGGFEKELRLLILRYFERQLKEISKSSLPFSQKMIFLKKARQAIMK 550


>gi|256845591|ref|ZP_05551049.1| DNA primase [Fusobacterium sp. 3_1_36A2]
 gi|256719150|gb|EEU32705.1| DNA primase [Fusobacterium sp. 3_1_36A2]
          Length = 603

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 152/632 (24%), Positives = 273/632 (43%), Gaps = 41/632 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y ++ I  LL ++ I  ++G++++  +  +      Y   CPFH +  PSF     K 
Sbjct: 1   MYYKQEDIDKLLDNLRIEEVVGEFIELKKVGS-----SYKGLCPFHADTNPSFSVTPEKK 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              CF C   G+ ++F S +   S+ E+++ L+    + +   +       +      ++
Sbjct: 56  ICKCFVCGSGGNAINFYSKIKNISYTEAIRELSKKYKINIKEYNNTNA--NENYEKFYQI 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E + +FF   + +   +    YL  RG+D++ I+  +LGYAP     L E L  KG+++
Sbjct: 114 MEDSHNFFMEKIFSQDSRGALEYLSNRGLDTNLIKEHQLGYAPPKWSELYELLNSKGYND 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
             ++  GL I        YD FRNR+IFPI S  G++IAFGGRTL K ++  KY+NSP+T
Sbjct: 174 GDLLALGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRTLEKDDTVPKYINSPDT 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGKN Y    A+N   K           ++ IL+EGYMDVLS    G    ++ LG
Sbjct: 233 PIFKKGKNAYGIERAINIKNK-----------NYSILMEGYMDVLSANIYGFDTSIAPLG 281

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q +L+ + S  I+L FD D  G+ A  +A          G  +  +     +DP
Sbjct: 282 TALTEEQAQLIKRYSSNILLSFDMDKAGISATERA---SFILKSQGFNIRVLQFEGSKDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS-FNTPDERAELEIHLKNCINHIKDQ 418
           D F++  GK AF K++  SL + D L+   +      N    +       K+  ++++  
Sbjct: 339 DEFLKKNGKEAFLKVVENSLEIFDFLYNLYSNEYDLNNNIIAKQNFIERFKDFFSNVESD 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +  Y + + +++               + +     + ++            ++ K  K
Sbjct: 399 LEKEMYLKKLSEKIDINVDILRKILVEQNKKFSIKKDYFNENQEK--------IEKKEFK 450

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           + +  E A++  LI  P       +E  +    N   +     +  +       +  EI 
Sbjct: 451 QANSLEMAIVKMLIRKPEYYNFFKEEKLESDIANKIFKFFNQKIKENLFLDSSIIMREIK 510

Query: 539 QRLCER------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-L 591
             + E            L ++                N    +   ++ L L  + +  +
Sbjct: 511 NYIKESNNFSQYEKDNELARIIMDYVLIPNKIEEERENTELFKSYLREKLKLRDKTKDNI 570

Query: 592 SRQKE--EIEKQIAQVTAKGEAEKTAILISIL 621
           +++ E  +++K+IA+  +  E  K       L
Sbjct: 571 AKKIEFGKLKKEIAKTKSVEEFIKVYNSFKYL 602


>gi|237744141|ref|ZP_04574622.1| DNA primase [Fusobacterium sp. 7_1]
 gi|229431370|gb|EEO41582.1| DNA primase [Fusobacterium sp. 7_1]
          Length = 602

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 155/615 (25%), Positives = 270/615 (43%), Gaps = 31/615 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y ++ I  LL ++ I  ++G++++  +  +      Y   CPFH +  PSF  N  K 
Sbjct: 1   MYYKQEDIDKLLDNLKIEEVVGEFIELKKVGS-----SYKGLCPFHADTNPSFSVNPEKK 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              CF C   G+ ++F S +   S+ E+++ L+    + +           +      ++
Sbjct: 56  ICKCFVCGSGGNAINFYSKIKNISYTEAIRELSKKYKINIKEYSNTNI--NENYEKFYQI 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E + +FF   +     +    YL  RG+D++ I+  +LGYAP     L E L  KG+++
Sbjct: 114 MENSHNFFMEKIFLQDSRGALEYLSNRGLDTNLIKEHQLGYAPPKWSELYEFLNSKGYND 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
           E ++  GL I        YD FRNR+IFPI S  G++IAFGGRTL K  S  KY+NSP+T
Sbjct: 174 EDLLALGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRTLEKDNSVPKYINSPDT 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGKN+Y    A+N   K           ++ IL+EGYMDVLS    G    ++ LG
Sbjct: 233 PIFKKGKNVYGIERAINIKNK-----------NYSILMEGYMDVLSANIFGFDTSIAPLG 281

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q +L+ + S  I+L FD D  G+ A  +A          G  +  +     +DP
Sbjct: 282 TALTEEQAQLIKRYSSNILLSFDMDKAGISATERA---SFILKSQGFNIRVLQFEGSKDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D F++  GK AF K++  SL + D L+   +     N    +       K+  ++I++  
Sbjct: 339 DEFLKKNGKEAFLKVVENSLEIFDFLYNLYSSEYDLNNIMAKQNFIERFKDFFSNIENDL 398

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y + + +++               +       + D+            ++ K  K+
Sbjct: 399 EKEMYLKKLSEKIDISIDILRKSLIEKNKRHIVKKDYFDENQEK--------IEKKEFKQ 450

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +  E A++  L+  P       +E  +    N   +     +  +       + +E   
Sbjct: 451 ANNLEMAIVKMLLRKPEYYNFFKEEKLESDIANKIFKFFNQKIKENLFFDSNTIMKEFKN 510

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            + E       ++ +   R    + +T +    +             + +L  + K++I 
Sbjct: 511 YIEESNEFSQYEKNNELARIIMDYISTPDQIEEERENTELFKSYFRIKVKLRDKTKDDIN 570

Query: 600 KQIAQVTAKGEAEKT 614
           K++     K E EKT
Sbjct: 571 KKVKFGKLKKEIEKT 585


>gi|237742312|ref|ZP_04572793.1| DNA primase [Fusobacterium sp. 4_1_13]
 gi|229429960|gb|EEO40172.1| DNA primase [Fusobacterium sp. 4_1_13]
          Length = 603

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 152/632 (24%), Positives = 274/632 (43%), Gaps = 41/632 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y ++ I  LL ++ I  ++G++++  +  +      Y   CPFH +  PSF     K 
Sbjct: 1   MYYKQEDIDKLLDNLRIEEVVGEFIELKKVGS-----SYKGLCPFHADTNPSFSVTPEKK 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              CF C   G+ ++F S +   S+ E+++ L+    + +   +       +      ++
Sbjct: 56  ICKCFVCGSGGNAINFYSKIKNISYTEAIRELSKKYKINIKEYNNTNA--NENYEKFYQI 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E + +FF   + +   +    YL  RG+D++ I+  +LGYAP     L E L  KG+++
Sbjct: 114 MEDSHNFFMEKIFSQDSRGALEYLSNRGLDTNLIKEHQLGYAPPKWSELYELLNSKGYND 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
           E ++  GL I        YD FRNR+IFPI S  G++IAFGGRTL K ++  KY+NSP+T
Sbjct: 174 EDLLSLGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRTLEKDDTVPKYINSPDT 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGKN Y    A+N   K           ++ IL+EGYMDVLS    G    ++ LG
Sbjct: 233 PIFKKGKNAYGIERAINIKNK-----------NYSILMEGYMDVLSANIYGFDTSIAPLG 281

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q +L+ + +  I+L FD D  G+ A  +A          G  +  +     +DP
Sbjct: 282 TALTEEQAQLIKRYTSNILLSFDMDKAGISATERA---SFILKSQGFNIRVLQFEGSKDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS-FNTPDERAELEIHLKNCINHIKDQ 418
           D F++  GK AF K++  SL + D L+   +      N    +       K+  ++++  
Sbjct: 339 DEFLKKNGKEAFLKVVENSLEIFDFLYNLYSNEYDLNNNIIAKQNFIERFKDFFSNVESD 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +  Y + + +++               + +     + ++            ++ K  K
Sbjct: 399 LEKEMYLKKLSEKIDINVDILRKILVEQNKKFSIKKDYFNENQEK--------IEKKEFK 450

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           + +  E A++  LI  P       +E  +    N   +     +  +       +  EI 
Sbjct: 451 QANSLEMAIVKMLIRKPEYYNFFKEEKLESDIANKIFKFFNQKIKENLFLDSSIIMREIK 510

Query: 539 QRLCER------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LL 591
             + E            L ++                N    +   ++ L L  + +  +
Sbjct: 511 NYIKESNNFSQYEKDNELARIIMDYVLIPNKIEEERENTELFKSYLREKLKLRDKTKDDI 570

Query: 592 SRQKE--EIEKQIAQVTAKGEAEKTAILISIL 621
           +++ E  +++K+IA+  +  E  K       L
Sbjct: 571 AKKIEFGKLKKEIAKTKSVEEFIKVYNSFKYL 602


>gi|296273886|ref|YP_003656517.1| DNA primase [Arcobacter nitrofigilis DSM 7299]
 gi|296098060|gb|ADG94010.1| DNA primase [Arcobacter nitrofigilis DSM 7299]
          Length = 545

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 139/602 (23%), Positives = 248/602 (41%), Gaps = 66/602 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I++L  ++ I + I Q++   +   N     + ACCPFH E TPSF  + +K  Y
Sbjct: 2   INKDSIENLKNNVDIVDTISQFLQLKKSGAN-----FKACCPFHGESTPSFVVSPAKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C V GD + F+      S+ E++++LA++    L   D + +K++         IE
Sbjct: 57  HCFGCGVGGDSIKFVMEYEKLSYPEAIEKLASMNNFTLVYDDTEQKKQDTK------AIE 110

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               ++  +     +     Y+  RGI   +IE F++GYAP S  ++  +L+ K  +   
Sbjct: 111 EINKYYKKNF--VVNDTAKEYIKSRGIYESSIEKFEIGYAPSSGETI-NYLKSKFLNLND 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                L I    +   Y RF  R+ FPI S  G ++ FGGRT+  G + KY+NSP+T +F
Sbjct: 168 AK--ELGIIDTGANGLYARFIERITFPIYSLNGGLVGFGGRTI-TGHNAKYVNSPQTKIF 224

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           +K + LY +               +      II+ EGY+DV+ L QAG  N V++LGTAL
Sbjct: 225 NKSRLLYGYNL----------SKEKIYKKKEIIITEGYLDVIMLHQAGFDNAVATLGTAL 274

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T+  L +L +  PR+++ +DGD+ GL AA+KA  L+  +   G     ++  +G DP   
Sbjct: 275 TKDHLPILKRGEPRVIVAYDGDNAGLNAAFKASLLMAHNDFEG---GVIIFEKGFDPADM 331

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++        K+  +  P +             N P  + +    +   +N + +     
Sbjct: 332 VKDGKIEELNKIFSKPKPFIPFTIDHIISQFDLNDPQNKQKALHEVNEFLNTL-NAIYHD 390

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            YS+ I  +L           S   R                              K  +
Sbjct: 391 EYSRYIAQKLNIRENLIKITKSTTNRNN-----------------------NVQLSKVDI 427

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  ++N    L      +    +  +  +  +  L ++  +          +RL 
Sbjct: 428 GELCIIKAILNDKNRLSSVLDIIDASMF--DYHKNEFEILLTNIDD----------ERLN 475

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                E L+  D +  +A L     +     + +        +     L R+  +    +
Sbjct: 476 SVLLNERLEDYDDERLNAELLILLGKFYSNKLNEVLYDKNYTFNEKSSLIRKIRDNISML 535

Query: 603 AQ 604
            +
Sbjct: 536 KK 537


>gi|34763653|ref|ZP_00144581.1| DNA primase [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|294785120|ref|ZP_06750408.1| DNA primase [Fusobacterium sp. 3_1_27]
 gi|27886662|gb|EAA23827.1| DNA primase [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|294486834|gb|EFG34196.1| DNA primase [Fusobacterium sp. 3_1_27]
          Length = 603

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 153/632 (24%), Positives = 274/632 (43%), Gaps = 41/632 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y ++ I  LL ++ I  ++G++++  +  +      Y   CPFH +  PSF     K 
Sbjct: 1   MYYKQEDIDKLLDNLRIEEVVGEFIELKKVGS-----SYKGLCPFHADTNPSFSVTPEKK 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              CF C   G+ ++F S +   S+ E+++ L+    + +   +       +      ++
Sbjct: 56  ICKCFVCGSGGNAINFYSKIKNISYTEAIRELSKKYKINIKEYNNTNA--NENYEKFYQI 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E + +FF   + +   +    YL  RG+D++ I+  +LGYAP     L E L  KG+++
Sbjct: 114 MEDSHNFFMEKIFSQDSRGALEYLSNRGLDTNLIKEHQLGYAPPKWSELYELLNSKGYND 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
           E ++  GL I        YD FRNR+IFPI S  G++IAFGGRTL K ++  KY+NSP+T
Sbjct: 174 EDLLALGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRTLEKDDTVPKYINSPDT 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGKN Y    A+N   K           ++ IL+EGYMDVLS    G    ++ LG
Sbjct: 233 PIFKKGKNAYGIERAINIKNK-----------NYSILMEGYMDVLSANIYGFDTSIAPLG 281

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q +L+ + S  I+L FD D  G+ A  +A          G  +  +     +DP
Sbjct: 282 TALTEEQAQLIKRYSSNILLSFDMDKAGISATERA---SFILKSQGFNIRVLQFEGSKDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS-FNTPDERAELEIHLKNCINHIKDQ 418
           D F++  GK AF K++  SL + D L+   +      N    +       K+  ++++  
Sbjct: 339 DEFLKKNGKEAFLKVVENSLEIFDFLYNLYSNEYDLNNNIIAKQNFIERFKDFFSNVESD 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +  Y + + +++               + +     + ++            ++ K  K
Sbjct: 399 LEKEMYLKKLSEKIDINVGILRKILVEQNKKFSIKKDYFNENQEK--------IEKKEFK 450

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           + +  E A++  LI  P       +E  +    N   +     +  +       +  EI 
Sbjct: 451 QANSLEMAIVKMLIRKPEYYNFFKEEKLESDIANKIFKFFNQKIKENLFLDSSIIMREIK 510

Query: 539 QRLCER------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LL 591
             + E            L ++                N    +   ++ L L  + +  +
Sbjct: 511 NYIKESNNFSQYEKDNELARIIMDYVLIPNKIEEERENTELFKSYLREKLKLRDKTKDDI 570

Query: 592 SRQKE--EIEKQIAQVTAKGEAEKTAILISIL 621
           +++ E  +++K+IA+  +  E  K       L
Sbjct: 571 AKKIEFGKLKKEIAKTKSVEEFIKVYNSFKYL 602


>gi|212550798|ref|YP_002309115.1| DNA primase [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212549036|dbj|BAG83704.1| DNA primase [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 670

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 160/686 (23%), Positives = 279/686 (40%), Gaps = 70/686 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I+ +     I  ++  +V   +R  N     Y   CPFH++ TPS + + +K  Y
Sbjct: 2   IDSITIERIQSASQIYEVVSDFVTLKKRGVN-----YVGICPFHEDNTPSLYVSPAKNLY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
            CF+C   G  + F+      S+ E++Q LA   G+    +    + ++ + I+  +  L
Sbjct: 57  KCFACGEGGTAIHFVMKYEQLSYPEALQYLAKKYGIEFREIKMSNEQKQIQNIREAMFIL 116

Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              A   F  +L + ++ +     Y  +R      I+ F+LGYA   R S  +   + G+
Sbjct: 117 NSFAQKTFSTNLFDTKEGQSVGLSYFRKRNFRKDIIQKFQLGYADSQRDSFTQTAIRAGY 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
            +E + + GL I   N   + DRFR R+IFPI +  G+++AFGGR L K E V KY+NS 
Sbjct: 177 KQEYLKKTGLSIIEKNY--TIDRFRERVIFPIHTLSGKIVAFGGRILKKEEKVAKYVNSL 234

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ ++HK   LY  + A   + K               LVEGY DV+S+ QAG++NVV+S
Sbjct: 235 ESEIYHKSNELYGIYFARQAIVKY----------DQCYLVEGYTDVISMHQAGIENVVAS 284

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTALT+ Q+RL+ + +  I + +D D  G++AA ++I+L    L  G  +  VLL  GE
Sbjct: 285 AGTALTQGQIRLIRRFTKNITVLYDRDTAGIKAALRSINL---LLETGLNIKTVLLPEGE 341

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF +    T+F   I ++               + N P ++ ++       I  I +
Sbjct: 342 DPDSFSQKQSATSFNNYIKKNETDFVRFKVELLMQDAGNDPIKKVQILTETVYTIALIPE 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKY-------ITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
           +  R  Y +     L    +           E     +   K    + ++  +   + S 
Sbjct: 402 EITRLIYVKECSYLLDIDERLLMHNVEKKREELFLQKKKNDKLQLQKTEQQNTINNLPSL 461

Query: 471 LVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQE---------LADIRYDNNELQK-- 517
                LS      E  ++  ++ +       E   E         L  I +  ++L++  
Sbjct: 462 EHNLNLSFPFYEYETNIMYYVVRYGEQYFYYEYEDEGTNELISANLNVIEFIVSDLEEDE 521

Query: 518 ------LWSFLF---------------SDFVEQKYFLPEEIHQRLCERGFGE--LLKQLD 554
                 L+  +                  +              +    + E  +  Q  
Sbjct: 522 IELHYPLYRKMLKEGYEWCKKNNFIAEEYYKNHSDIKISHFAVDISTDKYIESKVFSQYK 581

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
               +      T ++ I  +       + L  +  +L  + E I KQI         +K 
Sbjct: 582 ETKVNEEKLKTTKQSQINKMLLKEIPYVMLNYKNAILKHRVETINKQIKLAEKGNNFDKQ 641

Query: 615 AILISILHEV--HIQIHQIESQEAMI 638
             LIS L  +    ++  +  +E +I
Sbjct: 642 KELISQLSGLLKTKKVIALRLRERII 667


>gi|146329001|ref|YP_001209966.1| DNA primase [Dichelobacter nodosus VCS1703A]
 gi|146232471|gb|ABQ13449.1| DNA primase [Dichelobacter nodosus VCS1703A]
          Length = 551

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 168/590 (28%), Positives = 248/590 (42%), Gaps = 50/590 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDW-DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P+ FI DL+    I +LIG  + +  +   N     Y ACCPFH EKTPSF  ++ K 
Sbjct: 4   RIPKSFIDDLINRTNIVSLIGSRLSYAKKMGAN-----YVACCPFHQEKTPSFTVSEVKQ 58

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-EKKEKIQTDL-I 118
           FYYCF C   GD L FL      SF+E+V+ LA   G+ +P  + +    +EK + +L +
Sbjct: 59  FYYCFGCQAGGDALRFLMDYEHLSFVEAVESLAHFHGLTIPYEETESYNPEEKSRIELGL 118

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             +  A  FF              YL  RGI  H ++ F LGYAP     L     +   
Sbjct: 119 LCLADAAQFFQRCFYTEEAVSAREYLRARGIKKHLVDDFLLGYAPAGNQLLAFLRDKYEL 178

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
              + +       G+     YD FR RL+FPIR+ RGQ+IAFG RT+   E  KYLNS E
Sbjct: 179 PLLQAVGL----IGEKDGRYYDWFRQRLMFPIRNIRGQIIAFGARTI-ANEQPKYLNSAE 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           +  F+K   LY F  A             R+  + +I+ EGY+DV+ + Q G+ N V++L
Sbjct: 234 SPWFNKRNELYGFDTA------------ARSKQTSLIVTEGYVDVIKMAQFGLDNAVATL 281

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA  +  L+ L K S ++  CFDGD  G  AA KA+ ++  H   G    FV L  GED
Sbjct: 282 GTAFGDTHLQQLKKRSKKVYFCFDGDAAGKHAAEKALHIIFTHYEEGYDWRFVFLPAGED 341

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PDSF+  +G  AF +L+  S P            R  N                      
Sbjct: 342 PDSFLTQHGSAAFLQLLDASEPP------SLFLQRLLNIDQRATWTAEEYAAV------- 388

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                  +     L  L Q +  +        + N         S++ ++     G L+ 
Sbjct: 389 ------VEKAAQWLGLLPQGHYRQMMQKQLQKQLNTSVAIIDS-SEKSIEYHAAGGSLAA 441

Query: 479 KPSLREAALLLTLINHPAILQEQY--QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            P+  EA +   L+  P+   +    Q  + +  +     +L  +L     ++     E 
Sbjct: 442 APTKLEARMAAVLLQQPSWYLKIDMNQYASLLAKEVPFFYRLL-YLLRCGADKAVLEAEI 500

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
               L         +QL   + +  L           +RQ  ++   L K
Sbjct: 501 RAMHLEVDLMRS--RQLFSLLDEKLLTVEFEGMMQELLRQHLKKQARLEK 548


>gi|317179806|dbj|BAJ57592.1| DNA primase [Helicobacter pylori F32]
          Length = 559

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 148/595 (24%), Positives = 251/595 (42%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +N     Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGSN-----YMACCPFHEERSASFSVNQIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I  FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSIESIRAFKLGLCTNRID---YSIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        + L+   +  ++ + +    +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKDLLSHPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +             +      LV    +     
Sbjct: 393 EYKPLIASLLQAPLHVLGIRERASFQPF--------YPKTEKPNHAQKLVNASSTLSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S+   +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557


>gi|261838883|gb|ACX98648.1| DNA primase [Helicobacter pylori 52]
          Length = 508

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 138/540 (25%), Positives = 230/540 (42%), Gaps = 39/540 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQVKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGAYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I  FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   +    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSNKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        +  +   +  ++ + +    +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +       +            LV    +     
Sbjct: 393 EYKPLIATLLQAPLHVLGIRERASFQPFYPKTEKPNHVQK--------LVNAPSTLSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502


>gi|297379234|gb|ADI34121.1| DNA primase [Helicobacter pylori v225d]
          Length = 559

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 145/567 (25%), Positives = 240/567 (42%), Gaps = 41/567 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +N     Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGSN-----YMACCPFHEERSASFSVNQIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I  FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDKKDRTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        +  +   +  ++ + +    +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +             +      LV    +     
Sbjct: 393 EYKPLIASLLQAPLHVLGIRERVSFQPF--------YPKTEKPNHAQKLVNAPSTLSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR-- 540
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +     
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATT 567
           L + GF + L+ L     +  L     
Sbjct: 503 LKKGGFEKELRLLILHYFERQLKEIPK 529


>gi|119716179|ref|YP_923144.1| DNA primase [Nocardioides sp. JS614]
 gi|119536840|gb|ABL81457.1| DNA primase [Nocardioides sp. JS614]
          Length = 932

 Score =  281 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 128/586 (21%), Positives = 229/586 (39%), Gaps = 44/586 (7%)

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLIRL 120
           CF C   G+ ++FL  + G +F E+V+RLA   GV L   +  + ++      +  L+  
Sbjct: 374 CFGCSEGGNVITFLMKIDGLTFGEAVERLADKVGVQLRREEGDVREERPKGPPRRRLVEA 433

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            +VA +++   L          +L  RG D  A E F +G+AP    +L+ HLRQKGFS 
Sbjct: 434 HKVAQEYYADQLATPDALVARQFLGGRGFDQAAAEHFGIGFAPRDGDALKTHLRQKGFSA 493

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238
           E++   GL+       + YDRFR RL++PIR + G  I FG R +   + +  KYLN+ E
Sbjct: 494 EEMTVGGLI-----GPSGYDRFRGRLLWPIRDASGDTIGFGARRIFDDDRIDAKYLNTSE 548

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K + LY    A   + +          SS  ++VEGY DV++   +GV   V++ 
Sbjct: 549 TPIYKKSQVLYGIDLARRDIGR----------SSQAVIVEGYTDVMACHLSGVTTAVATC 598

Query: 299 GTALTEYQLRLLWKL-------SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           GTA  +   R+L +           I+  FDGD  G +AA +A       +   ++    
Sbjct: 599 GTAFGDDHSRVLRRFLNDHQVTHGEIIFTFDGDAAGQKAALRAFGGDQNFV---SQTYVA 655

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +   G DP       G  A  +L+   +PL   +          +  D R          
Sbjct: 656 VEPGGLDPCDLRIQQGDAAVRELVARRVPLYRFVLTNVVREFDLDRADGRIAAVREAAKL 715

Query: 412 INHIKDQKL-RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
           +   +D  + +  +++ I +       + + E        +   R    + P+ R    S
Sbjct: 716 VLSSRDNSVAQSSFARDISELTGVDPNEVLVEVRRVVARHRNGDRGAVAEPPTNRSAVPS 775

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
           L            E   L  +I HP  +     ++    + +   + +W  + +      
Sbjct: 776 L-----HDPRFAIERETLQLVIQHPMTIGRSTGDIGPNDFVHPTYRAVWELVAAAGGPGA 830

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                    RL +         +   +    +     E +   V +   + L L      
Sbjct: 831 GAGDPSWANRLRDAATDPAASSV---ISALAVEPLKKEPDAAYVAEHVFRLLEL-----T 882

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +R+   I+ ++ +      AE+   +   L  +      +  + A
Sbjct: 883 AARRIAAIKSKLQRTNPVEHAEEFNKMFGELAALEAHRRALRDRLA 928



 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 2  NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              + I ++     I +++ QYV           G     CPFHDEK+PSF+ N S+GF
Sbjct: 4  RIRDEDIAEVREKARIDDVVSQYVTLRPAG----GGSLKGLCPFHDEKSPSFNVNPSRGF 59

Query: 62 YYC 64
          ++C
Sbjct: 60 FHC 62


>gi|218295155|ref|ZP_03495991.1| DNA primase [Thermus aquaticus Y51MC23]
 gi|218244358|gb|EED10883.1| DNA primase [Thermus aquaticus Y51MC23]
          Length = 577

 Score =  281 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 149/627 (23%), Positives = 263/627 (41%), Gaps = 64/627 (10%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
             ++ +   + +  ++ +YV           G +   CPFH EKTPSF+ ++ KG ++CF
Sbjct: 5   QVVEAIKRRLSLKEVVSRYVALKPAGR----GRWKGLCPFHQEKTPSFYVDEEKGLFHCF 60

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
            C   GD ++F+  + G  F  +++RLA  AGV LP          + + +L  ++++A 
Sbjct: 61  GCKAGGDLIAFVERIEGLDFQTALERLAEEAGVELPRRLGG-----ERRKELYEVLKLAQ 115

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
            +F   L+         YL+ RG+   ++  F LGYAP     L  +L + G S E+ ++
Sbjct: 116 AYFQEGLRAH--PEAMAYLEGRGLSGESVGRFGLGYAPPKGDGLLTYLSRHGVSPEEGLK 173

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
           AG+L   +     YDRFRNR+ FPI+   G+++AF GR L   E+ KYLNSPET LF K 
Sbjct: 174 AGVL--AEKEGRYYDRFRNRITFPIKDHLGRIVAFTGRAL-GDEAPKYLNSPETPLFRKR 230

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
           + L+ F  A   L+               I+VEG  D ++L Q G    V+ LG+ L+E 
Sbjct: 231 EVLFAFPEAKARLR-----------EGRAIVVEGLFDAIALHQLGFSETVAVLGSGLSEE 279

Query: 306 QLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS-FI 363
           Q RLL     R + L FD D+ G +A  +++DL +        + + +    +DP    +
Sbjct: 280 QARLLKTQEVREVYLAFDADEAGQKATLQSLDLEMAR----KFLFYAVRLPVKDPGELLL 335

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
              G+  F+K + E+LP V+  ++   +    + P+ + ++   L   +       L   
Sbjct: 336 HPEGRALFQKALEEALPEVEFRFQEAAKGLDLSRPEHKRKVLEALTPRM-------LSPE 388

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               + +RL+ L           G   K+ A +   +   + L      K +   +  L 
Sbjct: 389 PFDPVAERLKALV------VERLGLSPKELADYLQARKRGRPLPPPPPPKAEPRNRTLLL 442

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  ++  L++ P      +   A       E   L +       ++              
Sbjct: 443 ELDVMALLLSLPEESFLNWVLYAADHVWPPE-GSLLAEFLELARKEPRKD---------- 491

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                +L + +             E +   + +   +ALA  +    L R+        A
Sbjct: 492 -YLRSVLSRKEAGGILLERLMLAPEVDPSRLPEVMDKALARLREAYYLERR--------A 542

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQ 630
           ++        +  L+  + E+   I  
Sbjct: 543 KLKEVFLQNPSQELLREIQELDQAIEA 569


>gi|254778748|ref|YP_003056853.1| DNA primase [Helicobacter pylori B38]
 gi|254000659|emb|CAX28568.1| DNA primase [Helicobacter pylori B38]
          Length = 559

 Score =  281 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 148/595 (24%), Positives = 251/595 (42%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +N     Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGSN-----YMACCPFHEERSASFSVNQIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGAYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I+ FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIKAFKLGLCTNKID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA    L       R   +L     DP   
Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRNAAYKA---SLMLAKDQRRGGVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        + L+   +  ++ + +R  ++   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKDLLSHPMAFIEFVLRRMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +             +            +     
Sbjct: 393 EYKPLIATLLQAPLHVLGVRERASFQPFYPQT--------EKPNRAQRFAHVSNALSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S+   +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMICLKKARQAIMKLKQGELV 557


>gi|149923523|ref|ZP_01911924.1| DNA primase [Plesiocystis pacifica SIR-1]
 gi|149815592|gb|EDM75123.1| DNA primase [Plesiocystis pacifica SIR-1]
          Length = 798

 Score =  281 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 140/460 (30%), Positives = 216/460 (46%), Gaps = 38/460 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   I+ +     I  +IG +V   R   N     +   CPFHDEK+PSF+ +  +  
Sbjct: 3   AIPDHIIEQIREETDIVEVIGSHVGLKRSGKN-----FKGLCPFHDEKSPSFYVDPVRKS 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EKKEKIQTDL 117
           + CF C V GD  SF+  + G  F+ +VQ L A  GV +P          E +E+ +   
Sbjct: 58  FKCFGCGVWGDAFSFVQKIEGVGFLSAVQTLGARVGVAMPNQSKGDVRRAEVREREREQA 117

Query: 118 IRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAP----DSRYSLREH 172
            R+   A + +   L +    +    Y  ERGID    E F++GYAP        +L   
Sbjct: 118 YRVNAAAAEVYRTILLSEADGEAGRVYQRERGIDEETSEAFRVGYAPAPEEAGWDTLVRA 177

Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK----- 227
           L+++  S +     GL+   +   + YDRFR RL+FPI    G+V+ F GR L +     
Sbjct: 178 LQKRDLSLDVAKNLGLIAASNRGGSYYDRFRGRLMFPIIQPGGRVLGFSGRVLPRFAETE 237

Query: 228 --GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
              ++ KY+NSPE++L+ K K L+    A + ++K+ R           ILVEG +DV+S
Sbjct: 238 SGDKAPKYVNSPESVLYKKSKTLFGLHSAGSVMRKAERG----------ILVEGQIDVVS 287

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           + Q G +  V+ LGTALT++Q  LL + + +I+LCFDGD  G +AAY A+ L    L  G
Sbjct: 288 MHQRGYRETVAPLGTALTKHQCELLARFTNQIILCFDGDRAGAKAAYAAMPL---LLEVG 344

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             V    L  GEDPDS          + L+      ++ L +R     +  + D +A   
Sbjct: 345 MDVRVAALPEGEDPDSI----DPEHLDNLLRAPGSGLEWLMRRMVAKGARQSIDAKARAL 400

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
             L   +  +K +  R  Y     + L    ++  +   G
Sbjct: 401 RALVPLLRCVKGRDARGDYCNLAAEMLDLPPRRVWSAVGG 440



 Score = 54.9 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 57/198 (28%), Gaps = 13/198 (6%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR---EAALLLTLIN 493
                      R    + R   +  PS       +      +        +A++   L++
Sbjct: 606 PADAQTMPQSPRRASPSPRAGSKPPPSPSQFSGGVPHSAAMRSVLPLPSGQASVTALLVD 665

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            P + +   +        +  LQ + + +    ++ +    E     L +     +L   
Sbjct: 666 RPELARNAERNGVLDHVTDQRLQPILARVIQAALDGETMPSEGELLDLVDPSQHRML--- 722

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                              D +    + L + +R R L  +   +E QIA+  A G  + 
Sbjct: 723 ------HDHLFGHEFLEDEDPQARLDEGLQICRRDR-LEGELHSLEHQIAEARATGRLDV 775

Query: 614 TAILISILHEVHIQIHQI 631
              L+         + ++
Sbjct: 776 VRELMVKRMATRSALAEL 793


>gi|162447799|ref|YP_001620931.1| DNA primase [Acholeplasma laidlawii PG-8A]
 gi|161985906|gb|ABX81555.1| DNA primase [Acholeplasma laidlawii PG-8A]
          Length = 575

 Score =  281 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 143/626 (22%), Positives = 268/626 (42%), Gaps = 56/626 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            +  + +     I  L+ +YVD  +R  N     Y   CPFHDEKTPSF     K   +C
Sbjct: 3   DNIYQKINEQTDIVALVSKYVDLTKRGKN-----YMGLCPFHDEKTPSFSVTPEKNIAFC 57

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C   G  ++FL+ +   S  ++ + LA   G+       + + +      L  ++  A
Sbjct: 58  FGCKKGGAPITFLAQIKNISNADAAKELAQELGIEF----GQTKVQNNPFKHLHDVMNDA 113

Query: 125 TDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
             F+  +LKN+   K  + YL  R +    I  F++GYAPD   SL + LR K  S   +
Sbjct: 114 ASFYQFALKNSESGKLAYDYLTNRQLSDELIHHFEVGYAPDQIDSLYKMLRSKNHSVSDM 173

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
           +  GL +  +     YD FRNR+ FPI+   GQ+IAF GRTL+K E  KY+NS ET +F 
Sbjct: 174 MSLGL-VKQNEEGHYYDVFRNRITFPIKDEHGQIIAFSGRTLNKNEKAKYINSTETPIFK 232

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           KG  LY++F ++  + K             +IL EG+ DV +  +AG +  V+++GTA+T
Sbjct: 233 KGLTLYHYFESIRPVVKQ----------KHVILHEGFFDVFASYKAGFEASVATMGTAIT 282

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
             Q +L+ +++  +V+ +DGD+PG++A   AI +       G  ++ + L    DPD F+
Sbjct: 283 SDQAKLIRRITDHVVIAYDGDNPGIQATLHAIPI---LKRQGLSISILNLPNKMDPDDFV 339

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
             +G   ++ L  + L  V   +    +++ F   D+  + +  +K  +    D  +   
Sbjct: 340 LKHGVDKYQALFNKLLDPVQFGYIYYQKDKDFKKSDDITKFKQEMKQLLVG-SDPTIIDL 398

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +   D L                      +    +  S   ++   +  K+  +    
Sbjct: 399 YERRSFDELGI--------------------QLLINEHSSSLPVKQKPIDRKVISRAERS 438

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
              +++ L+     L +    +      + + ++L+  L + +        + ++    +
Sbjct: 439 IDIIIMDLLKQRKYLDKIRHSILLTDITDPKKRELYKDLMNYYEIN---SDDALNLEAFK 495

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            G+ + ++ ++   +           N   +           K+         EI+  I 
Sbjct: 496 MGYTKEIELVETYCKSTDYCKNLLIQNDKTLNDILVHFQNYKKQL--------EIQSLIK 547

Query: 604 QVTAKGEAEKTAILISILHEVHIQIH 629
           +  +  +  +    +  + E+  Q+ 
Sbjct: 548 KTESITDHLEMNRTLKAIDELRKQVK 573


>gi|308182198|ref|YP_003926325.1| DNA primase [Helicobacter pylori PeCan4]
 gi|308064383|gb|ADO06275.1| DNA primase [Helicobacter pylori PeCan4]
          Length = 559

 Score =  281 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 148/595 (24%), Positives = 254/595 (42%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +N     Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGSN-----YMACCPFHEERSASFSVNQVKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I+ FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSIESIKAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP++ LF
Sbjct: 168 LIELGVLGKSDKKDRTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQSKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        + L+   +  ++ + +R  ++   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKDLLSRPMAFIEFVLRRMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +             +  +    V    +     
Sbjct: 393 EYKPLIATLLQAPLHVLGVRERASFQPF--------YPKTEKPNLAQKFVHVSNTLSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S    +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSPLPFSEKMIFLKKARQAIMKLKQGELV 557


>gi|307636696|gb|ADN79146.1| DNA primase [Helicobacter pylori 908]
 gi|325995282|gb|ADZ50687.1| DNA primase [Helicobacter pylori 2018]
 gi|325996883|gb|ADZ49091.1| DNA primase [Helicobacter pylori 2017]
          Length = 559

 Score =  281 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 146/595 (24%), Positives = 251/595 (42%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +N     Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKLGSN-----YMACCPFHEERSASFSVNQVKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+ A    SF+E++++LA    + L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNITLEY----DKSAYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I+ FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSMESIKAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDKEDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G +AAYKA  ++      G     VL     DP   
Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRKAAYKASLMLAKEQRKG---GVVLFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I  +     +  +   +  ++ + +    +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANHQIETLKNWLSRPIAFIEFVLRHMAGSYVLDDPLEKDKALKEMLGFLKNF-SLLLQN 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +             +                  
Sbjct: 393 EYKPLIATLLQAPLHVLGIREPVSFQPF--------YPKTEKPNHSQKFAHVSSMPSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S+   +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMICLKKARQAIMKLKQGELV 557


>gi|118474432|ref|YP_892863.1| DNA primase [Campylobacter fetus subsp. fetus 82-40]
 gi|118413658|gb|ABK82078.1| DNA primase [Campylobacter fetus subsp. fetus 82-40]
          Length = 546

 Score =  281 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 140/627 (22%), Positives = 256/627 (40%), Gaps = 85/627 (13%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
             I++L   + I++++G Y+   R  +     D+   CPFH++K PS   + SKG ++CF
Sbjct: 5   SSIENLKNIVDIADVVGSYLPLKRSGS-----DFVCVCPFHNDKNPSMRVSPSKGIFHCF 59

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
           SC   GD + F+      S+ E++++LA +    L   D K E     +     ++E   
Sbjct: 60  SCKAGGDSIKFIMDYEKLSYPEAIEKLANMYNFTLNYTDNKNEHHYDKK-----ILENLN 114

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
            ++   L     +    YL  RGI+   IE ++LG+A  S  +    L  +    ++ + 
Sbjct: 115 LYYKSMLYKN--REAINYLYSRGINDAMIEKWELGWAGAS-QATINLLENEEIEPKEALY 171

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
            G +    N    Y  F NR+ FPI +  G+++ FGGRT+      KY+NSP++ +F K 
Sbjct: 172 VGAVKQ--NETGLYASFINRITFPIYNHLGKLVGFGGRTI-SNNPAKYVNSPQSAIFDKS 228

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
           K LY +  A N + K             II+ EGYMD + L  AG+ N V+ LGTALTE 
Sbjct: 229 KLLYGYDKAKNQIFKK----------GEIIICEGYMDCIMLHLAGISNAVAVLGTALTEK 278

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
            + LL +   +++L FD D+ G+ AA+K+  L+      G     VL+S G+DP   +  
Sbjct: 279 HIPLLKRSDIKVILSFDNDEAGVNAAFKSAKLLASSECDG---RVVLISGGKDPAELVAS 335

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
                    +   + L +   +   ++ +  TP E A+    ++     +K + +   Y 
Sbjct: 336 GRANELRNSLEGGVELGEFYIRHLIKSSNPKTPLEVAKTLESVQEFTKGLK-EIVANSYV 394

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             +   L  L     +      RY  K    ++ K   +                 L E 
Sbjct: 395 PLVSSLLS-LAPNSFSLCGNGFRYSPKKQMAKETKSAKK----------------DLLEL 437

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            +L  ++ +   L+    +     +      +++  +                  + +  
Sbjct: 438 EILKNMLLNKDYLEVVKSDCGSDMFVT--HNEIYKAV-----------------TISQNP 478

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
               +++L                ++ D  + Y     L K   +L  +    +K I  +
Sbjct: 479 NNPHIREL----------------SLNDNFELYDSLDRLKKALNIL--KINFCDKTIVLL 520

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIE 632
            +  +  K   + + L  +  Q+  I+
Sbjct: 521 ASSNDKSKFEKI-AQLQNIKKQLKGIQ 546


>gi|308061315|gb|ADO03203.1| DNA primase [Helicobacter pylori Cuz20]
          Length = 559

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 146/595 (24%), Positives = 249/595 (41%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQVKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I  FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSIESIRAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        +  +   +  ++ + +    +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +             +      LV    +     
Sbjct: 393 EYKPLIASLLQAPLHVLGIRERVSFQPF--------YPKTEKPNHAQKLVNAPSTLSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S+   +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557


>gi|217031755|ref|ZP_03437259.1| hypothetical protein HPB128_155g68 [Helicobacter pylori B128]
 gi|216946602|gb|EEC25202.1| hypothetical protein HPB128_155g68 [Helicobacter pylori B128]
          Length = 514

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 137/540 (25%), Positives = 232/540 (42%), Gaps = 39/540 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQVKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    + L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNIALEY----DKGVYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I+ FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIKAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP++ LF
Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQSKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+D + L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDAILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        + L+   +  ++ + +R   +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKDLLSRPMAFIEFVLRRMASSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +             +  +         +     
Sbjct: 393 EYKPLIAALLQAPLHVLGIRERASFQPF--------YPKTEKPNLAQKFAHVPNTMSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502


>gi|15611081|ref|NP_222732.1| DNA primase [Helicobacter pylori J99]
 gi|9789776|sp|Q9ZN49|PRIM_HELPJ RecName: Full=DNA primase
 gi|4154512|gb|AAD05592.1| DNA PRIMASE [Helicobacter pylori J99]
          Length = 559

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 146/595 (24%), Positives = 251/595 (42%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +N     Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGSN-----YMACCPFHEERSASFSVNQVKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           YCF C   GD + F+ A    SF+E++++LA    + L       +       +   L+E
Sbjct: 57  YCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNIALEY----DKGVYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I+ FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSMESIKAFKLGLCTNKID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDKEDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRNAAYKASLMLAKEQRKG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I  +     +  +   +  ++ + +    +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANHQIETLKNWLSRPIAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQN 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +       ++                       
Sbjct: 393 EYKPLIATLLQAPLHVLGIREPVSFQPFYPKTEKPNRPQK--------FAHVSSMPSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S  + +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSPLSFSEKMIFLKRARQAIMKLKQGELV 557


>gi|254302831|ref|ZP_04970189.1| DNA primase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323023|gb|EDK88273.1| DNA primase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 603

 Score =  280 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 153/633 (24%), Positives = 277/633 (43%), Gaps = 43/633 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M + ++ I  LL ++ I  ++G++++  +  +      Y   CPFH +  PSF     K 
Sbjct: 1   MYFKQEDIDKLLDNLRIEEVVGEFIELKKVGS-----SYKGLCPFHADTNPSFSVTPEKK 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              CF C   G+ ++F S +   S+ ++++ L+    + +   +       +      ++
Sbjct: 56  ICKCFVCGSGGNAINFYSKIKNISYTDAIRELSKKYRINIKEYNNAN--VNENYEKFYQI 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E + +FF   + +   +    YL  RG+D++ I+  +LGYAP     L E L  KG+S+
Sbjct: 114 MEDSHNFFMEKIFSQDSRGALQYLSNRGLDTNLIKEHQLGYAPPKWSELYELLNSKGYSD 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
           E ++  GL I        YD FRNR+IFPI S  G++IAFGGR+L K +S  KY+NSP+T
Sbjct: 174 EDLLALGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRSLEKDDSIPKYINSPDT 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KG+N Y    A+N   K           ++ IL+EGYMDVLS    G    ++ LG
Sbjct: 233 PIFKKGRNAYGIERAINIKNK-----------NYSILMEGYMDVLSANIYGFDTSIAPLG 281

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q +L+ + S  I+L FD D  G+ A  +A          G  +  +     +DP
Sbjct: 282 TALTEEQAQLIKRYSSNILLSFDMDKAGIAATERA---SFILKSQGFNIRVLQFEGSKDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS-FNTPDERAELEIHLKNCINHIKDQ 418
           D F++  GK AF K++  SL + D L+   +      N    +       K   +++++ 
Sbjct: 339 DEFLKKNGKEAFLKVVENSLEIFDFLYNLYSSEYDLDNNIIAKQNFIERFKEFFSNVEND 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +  Y + + +++               +       + D             ++ K  K
Sbjct: 399 LEKEMYLKKLSEKIDISVDVLRKTLVEQNKKHAIRKDYVDINQEK--------IEKKEFK 450

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           + +  E A++  L+  P       +E  +    N   +     +  +       + +E  
Sbjct: 451 QANNLEMAIVKMLLRKPEYYNFFKEEKLESDIANKIFKFFNQKIKENLFFDSNTIMKEFK 510

Query: 539 QRLCE-RGFGELL--KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-----L 590
             + E   F +     +L R + D  L     E    ++   ++  L +  + R      
Sbjct: 511 NYIEESNEFSDYEKNNELARIIMDYILIPNKFEEERENI-ALFKSYLRVKLKLRDKTKDD 569

Query: 591 LSRQKE--EIEKQIAQVTAKGEAEKTAILISIL 621
           +S++ E  +++K+I +  +  +  K       L
Sbjct: 570 ISKKIEFGKLKKEIEETKSVEDFIKVYNSFKYL 602


>gi|307298747|ref|ZP_07578550.1| DNA primase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915912|gb|EFN46296.1| DNA primase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 569

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 142/628 (22%), Positives = 254/628 (40%), Gaps = 66/628 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           + ++ + ++   I I + IG+YV+  +  +      Y   CPFH++  PSF+ +  +GF+
Sbjct: 2   FTKEELDEIKKSINIVDFIGRYVNLQKAGS-----SYRGLCPFHNDNDPSFYVHPQRGFF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C  KGD +SF   +   SF E+V+RLA  AG+P+ V        E        ++ 
Sbjct: 57  HCFGCGEKGDVISFYQKIENLSFAEAVKRLADYAGIPIQVDT-----AESEYDKFTTIMS 111

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
                ++  LK  R + L Y L++R I  + I+ F+LGY+PD R   +    +      +
Sbjct: 112 RLAGIYNRELKEKRPETLAYLLEKRKISQNTIDEFQLGYSPDERTFPQSLPSKLRTD--E 169

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                L I     AT  DRF  RL+ PI +  G+V+ FGGR +   +  KY+NS E+  F
Sbjct: 170 KTLLQLGILVRRGATYSDRFAGRLMIPIDNESGKVVGFGGRIMDAEKGPKYINSSESKYF 229

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K + L+N   A   +++           ++ ++ EGY DV+SL +AG+ N V  LGTAL
Sbjct: 230 QKNRLLFNLSRARAAIKQL----------NYAVIAEGYFDVISLFEAGITNSVGLLGTAL 279

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE  LR+L   +  ++   D D+ G  A+ ++ID+             V     +DP   
Sbjct: 280 TERHLRILGNYTRNLLFFLDSDEAGQTASLRSIDIAE---KLDFGTAVVFSRDQKDPADL 336

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
               G  A ++ +  ++P      +  +     + P  R  L  HLK  +   +      
Sbjct: 337 FVAEGPKAIKETLALAIPGPAFRVEFFSRKLDLSIPLGRKHLIEHLKPYVISFRS----- 391

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                                S      +K      +   + R   S    G++    +L
Sbjct: 392 -------------TGNLAAVQSTIAALAQKTGYSERELESALRGGMSKSSGGEMKSGLAL 438

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           +    +   + HP +     +++  +                     +    +E+ + + 
Sbjct: 439 KLKDHIRIYLQHPKLRATVVKQIELM--------------------NESRDLKELLKGMK 478

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +    E L  L  +     L    +     D  Q   Q+  LY   RL+  +  EI++++
Sbjct: 479 KGLELEELLDLVEESIGRELIELASTCIDFDTAQRVLQSTGLYANKRLVEEEMAEIDRRL 538

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQ 630
                  +      L+    E+   + +
Sbjct: 539 ---PKVKDEGARKALLIRRIELRRMLER 563


>gi|109948169|ref|YP_665397.1| DNA primase [Helicobacter acinonychis str. Sheeba]
 gi|109715390|emb|CAK00398.1| DNA primase DnaG [Helicobacter acinonychis str. Sheeba]
          Length = 559

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 145/595 (24%), Positives = 252/595 (42%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  +  LL    I  +I  YVD  +  +N     Y ACCPFHDE++ SF  N +KGFY
Sbjct: 2   ILKSSVDRLLQVADIVEVISSYVDLRKTGSN-----YMACCPFHDERSASFSVNQAKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIQFVMEFEKLSFVEALEKLAHRFNVTLEY----DKGVYYDYKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG++  +I  FKLG   +    +   +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLDYLQKRGLNIESIRAFKLGLCVNR---IYHGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   DN+  +Y RF +R++FPI +   QV+ FGGRTL K +  KY+NSP++ LF
Sbjct: 168 LIELGVLGKNDNNQKTYLRFLDRIMFPIYNPSAQVVGFGGRTL-KEKGAKYINSPQSKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A   + K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKESIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGEPEIFLSYDGDKAGRNAAYKASLMLAKEQRKG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        +  +   +  ++ + +    +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANNQIETLKNWLSHPIAFIEFVLRHMASSYVLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ        +     + +       +             V    +     
Sbjct: 393 EYKPLIATLLQVPSHVLGIKERSSFQPFYSKTEKSNYSQK--------FVHVSNTLSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S  + +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSPLSFSEKMIALKKVRQAIIKLKQGELV 557


>gi|87198665|ref|YP_495922.1| DNA primase [Novosphingobium aromaticivorans DSM 12444]
 gi|87134346|gb|ABD25088.1| plasmid and phage DNA primase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 572

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 219/448 (48%), Gaps = 27/448 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P  F+ +L     +S LI Q +  D+        ++ ACCPFH EKTPSF  ND+KG
Sbjct: 1   MAIPHQFLDELRSRTTLSALIAQTLKIDKAGR-----EFKACCPFHGEKTPSFTINDAKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FY+CF C   GD + ++    G  FI++V  LA+ AG+ +P   P+  ++      +   
Sbjct: 56  FYHCFGCGAHGDAIRWMIDQRGLQFIDAVSELASAAGMKVPAPTPQERERSAKIETVREA 115

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +++A   F   L+      +  YL+ RG+    +E+F +GYA     SLR     +   +
Sbjct: 116 LDIAQGIFVGQLRE--AGAVMQYLERRGMTPMDLEIFGIGYARGMDGSLRGSGIGRQIGQ 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--KGESVKYLNSPE 238
              + +          +  + F +R+  PI  +RG+++ FGGR     + ++ K++NSP+
Sbjct: 174 AAGLLSQ-----REDGSLREMFHDRVTVPIHDARGRLVGFGGRVWPGRRRDTPKFVNSPD 228

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + +F KG+ L+N                R  + + +I+VEGY DV+S+ +AG    V+ +
Sbjct: 229 SPIFDKGRTLFNLH--------RAAPAARPGAENRLIVVEGYFDVVSMARAGFAACVAPM 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE QL   W+L  R VL FDGD  G +AA +A    +  + PG  +   LL  G+D
Sbjct: 281 GTALTEEQLVRCWRLHHRPVLLFDGDSAGQKAAVRACRTAIPGIGPGRELAIALLPDGKD 340

Query: 359 PDSFIRCY----GKTAFEKLIVESLPLVDMLWKRET-ENRSFNTPDERAELEIHLKNCIN 413
           PD  +       G+ A E ++ E+LPL   L+     E  +  TP++ A +   L     
Sbjct: 341 PDELLYMDATGMGRRAIEAIVTEALPLHTFLFDAIVAEAGANPTPEQTAAVWAELAALAG 400

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
            I D++ R  Y    R R ++       
Sbjct: 401 EIADEETRCQYLGTWRARFEREISALPQ 428


>gi|317176818|dbj|BAJ54607.1| DNA primase [Helicobacter pylori F16]
          Length = 559

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 145/553 (26%), Positives = 238/553 (43%), Gaps = 41/553 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +N     Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGSN-----YMACCPFHEERSASFSVNQIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I  FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YSIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSTQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  Y+ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEYIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        +  +   +  ++ + +    +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +             +      LV    +     
Sbjct: 393 EYKPLIASLLQAPLHVLGIRERASFQPF--------YPKTEKPNHAQKLVNASSALSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR-- 540
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +     
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 541 LCERGFGELLKQL 553
           L + GF + L+ L
Sbjct: 503 LKKGGFEKELRLL 515


>gi|298737104|ref|YP_003729634.1| DNA primase [Helicobacter pylori B8]
 gi|298356298|emb|CBI67170.1| DNA primase [Helicobacter pylori B8]
          Length = 559

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 144/595 (24%), Positives = 252/595 (42%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQVKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    + L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNIALEY----DKGVYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I+ FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIKAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP++ LF
Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQSKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+D + L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDAILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        + L+   +  ++ + +R   +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKDLLSRPMAFIEFVLRRMASSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +             +  +         +     
Sbjct: 393 EYKPLIAALLQAPLHVLGIRERASFQPF--------YPKTEKPNLAQKFAHVPNTMSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S  + +  ++  +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEISKSPLSFSEKMNALKKARQAIMKLKQGELV 557


>gi|15644201|ref|NP_229251.1| DNA primase [Thermotoga maritima MSB8]
 gi|9910840|sp|Q9X1G3|PRIM_THEMA RecName: Full=DNA primase
 gi|4982016|gb|AAD36520.1|AE001796_12 DNA primase [Thermotoga maritima MSB8]
          Length = 565

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 137/628 (21%), Positives = 241/628 (38%), Gaps = 65/628 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR+ I+++   + I  +I +YV+  R  +      Y A CPFH E  PSF+ +     Y
Sbjct: 2   IPREVIEEIKEKVDIVEVISEYVNLTRVGS-----SYRALCPFHSETNPSFYVHPGLKIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + FL  + G SF E+++RLA  AG+ L +   +   +      L    E
Sbjct: 57  HCFGCGASGDVIKFLQEMEGISFQEALERLAKRAGIDLSLYRTEGTSEYGKYIRLY---E 113

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
                +   L   + K    YL  RG     I  F  GY P       E     G +   
Sbjct: 114 ETWKRYVKEL--EKSKEAKDYLKSRGFSEEDIAKFGFGYVPKRSSISIEVAE--GMNITL 169

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                  I         DRF  R++ PI++  G ++AFGGR L   E  KYLNSPET  F
Sbjct: 170 EELVRYGIALKKGDRFVDRFEGRIVVPIKNDSGHIVAFGGRAL-GNEEPKYLNSPETRYF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K K L+ F  A    +             F ++ EGY D L+  + G+   V+ LG +L
Sbjct: 229 SKKKTLFLFDEAKKVAK----------EVGFFVITEGYFDALAFRKDGIPTAVAVLGASL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           +   +  L   S  ++LCFD D  G RA  K+++     L     V     S  +DPD  
Sbjct: 279 SREAILKLSAYSKNVILCFDNDKAGFRATLKSLE---DLLDYEFNVLVATPSPYKDPDEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            +  G+ + +K++  S      L          N+P         LK  +  ++    R 
Sbjct: 336 FQKEGEGSLKKMLKNSRSFEYFLVTAGEVFFDRNSPAGVRSYLSFLKGWVQKMR----RK 391

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + I + + ++        +    +++ +  +      ++        +G        
Sbjct: 392 GYLKHIENLVNEVSSSLQIPENQILNFFESDRSNTMPVHETKSSKVYDEGRG-------- 443

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
               L    +N+  + ++  + L     ++   ++ +  +     E    + E   + L 
Sbjct: 444 ----LAYLFLNYEDLREKILE-LDLEVLEDKNAREFFKRV--SLGEDLNKVIENFPKELK 496

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +  F  +                          + +   L+   + R + R+  EI+  I
Sbjct: 497 DWIFETI-----------------ESIPPPKDPEKFLGDLSEKLKIRRIERRIAEIDDMI 539

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQ 630
            + +     E+  +L+S+  ++  +I +
Sbjct: 540 KKAS---NDEERRLLLSMKVDLLRKIKR 564


>gi|15644645|ref|NP_206814.1| DNA primase [Helicobacter pylori 26695]
 gi|2494141|sp|P56064|PRIM_HELPY RecName: Full=DNA primase
 gi|2313086|gb|AAD07082.1| DNA primase (dnaG) [Helicobacter pylori 26695]
          Length = 559

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 145/595 (24%), Positives = 253/595 (42%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YV+  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVNLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+ A    SF+E++++LA    + L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNIVLEY----DKGVYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I+ FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIKAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   DN   +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP++ LF
Sbjct: 168 LIELGVLGKSDNDQKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQSKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        +  +   +  ++ + +R  ++   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKNWLSHPMAFIEFVLRRMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +             +            +     
Sbjct: 393 EYKPLIATLLQAPLHVLGIRERVSFQPF--------YPKTEKPNRPQRFAHVSSAPSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S+   +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMICLKKARQAIMKLKQGELV 557


>gi|299771333|ref|YP_003733359.1| DNA primase [Acinetobacter sp. DR1]
 gi|298701421|gb|ADI91986.1| DNA primase [Acinetobacter sp. DR1]
          Length = 624

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 158/680 (23%), Positives = 267/680 (39%), Gaps = 114/680 (16%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+  I  +L    I +LIGQ V   +         Y  CCPFH EKTPSFH    K 
Sbjct: 1   MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK----------- 109
           +Y+CF C   G+ + FL  +   +FI+ ++ L++ AGV LP  + + +K           
Sbjct: 56  YYHCFGCQANGNAIRFLMDIDNRNFIDVMKELSSSAGVELPKDNTENKKLSYTRQVTKPP 115

Query: 110 -------------KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEM 156
                         ++   +    +E    FF                 + G     +E 
Sbjct: 116 VAKANTAEPVTPTPQQPTDESYNTLEPV--FFDDPFAQFEQPFSFDEPVQEGNLYDLLEN 173

Query: 157 FKLGYAP--DSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS---------------- 198
               Y     +    + + +Q+G + + I    L    ++                    
Sbjct: 174 VAQFYEHQLPNSQKAKNYFKQRGLTNQTIQFWRLGYAPEDWQHLEKAFPYDIDGLKQLGL 233

Query: 199 ---------YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLY 249
                    +D  R+R+IFPIR  +G+V+ FGGR L+     KY+NSP++ +FHK + LY
Sbjct: 234 IRSSDSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLLY 293

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309
             +                  SS  ++VEGYMDV++L Q G+   V++LGTA     L +
Sbjct: 294 GLYEGRKL------------KSSDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHLNI 341

Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
           L+K + RI + FDGD  G +AA + +++ L  L  G  + F +L    DPDS IR  G  
Sbjct: 342 LFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREGLE 401

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQAI 428
            F+KL+ ++  L D ++   T     +TP+ ++ +   L+     +      RY  +Q+ 
Sbjct: 402 NFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLNQSF 461

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           R++L     K  T    +      N + +D                         E   +
Sbjct: 462 REKLG--LGKRFTPQVSHDASLSFNIQTKD-------------------------EDFAV 494

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             L++HP  L   ++ L      +  L K+ + L   F E      +E+           
Sbjct: 495 AILMHHP-FLYIHFEGLRAYIPQDELLAKILATLNRIFDELP--DDQELATYYVLGACSS 551

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
              ++   ++   + +        +V     Q  AL  + R L ++ +     I      
Sbjct: 552 YCHEIADIMQRTNIQAL---TQAPEVADKLAQEYALGLKERYLRQKLKSPISLI------ 602

Query: 609 GEAEKTAILISILHEVHIQI 628
               ++  L   L+E+  QI
Sbjct: 603 ----ESRNLRQQLNELTKQI 618


>gi|188526822|ref|YP_001909509.1| DNA primase [Helicobacter pylori Shi470]
 gi|188143062|gb|ACD47479.1| DNA primase [Helicobacter pylori Shi470]
          Length = 559

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 146/595 (24%), Positives = 250/595 (42%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I  FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSIESIRAFKLGLCTNRID---YDIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDKKDRTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD+ G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDNAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        +  +   +  ++ + +    +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +       +            LV    +     
Sbjct: 393 EYKPLIASLLQVPLHVLGIRERASFQPFYPKTEKPNHTQK--------LVNASSTLSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S+   +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557


>gi|217034700|ref|ZP_03440103.1| hypothetical protein HP9810_880g11 [Helicobacter pylori 98-10]
 gi|216942840|gb|EEC22335.1| hypothetical protein HP9810_880g11 [Helicobacter pylori 98-10]
          Length = 559

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 143/595 (24%), Positives = 246/595 (41%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLKKSGS-----SYMACCPFHEERSASFSVNQVKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYCDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I  FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLRLESIRAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QA  +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQADFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRSAAYKASLMLAKEQRRG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        +  +   +  ++ + +    +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKNWLSHPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +       +          +             
Sbjct: 393 EYKPLIATLLQAPLHVLGIRERASFQPFYPKTEKPNHAQKWVNAPSTL--------SLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + +   ++ +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHK--RQEFDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S+   +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557


>gi|261837467|gb|ACX97233.1| DNA primase [Helicobacter pylori 51]
          Length = 559

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 145/595 (24%), Positives = 247/595 (41%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHKERSASFSVNQVKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I  FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YSIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRGG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        +  +   +  ++ + +    +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +       +             V    +     
Sbjct: 393 EYKPLIASLLQAPLHVLGIRERASFQPFYPKTEKPNHAQKW--------VNASSALSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S+   +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557


>gi|295698767|ref|YP_003603422.1| DNA primase [Candidatus Riesia pediculicola USDA]
 gi|295698782|ref|YP_003603437.1| DNA primase [Candidatus Riesia pediculicola USDA]
 gi|291157169|gb|ADD79614.1| DNA primase [Candidatus Riesia pediculicola USDA]
 gi|291157339|gb|ADD79784.1| DNA primase [Candidatus Riesia pediculicola USDA]
          Length = 586

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 153/610 (25%), Positives = 266/610 (43%), Gaps = 45/610 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               +F+K+L+    I  LI   ++   +  N     Y A CPFH EKTPSF  N  K F
Sbjct: 6   KISNEFVKELIEITDIVELIQNDINLQEKGKN-----YVALCPFHKEKTPSFTVNKEKRF 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKIQTDLIRL 120
           YYCF C   G+ + FL    G  F+E+++ L+ + G+ +         K+E  +     +
Sbjct: 61  YYCFGCSSHGNSIDFLMNYKGVGFVEAIKELSEMNGLEIVYEELNNFSKRENFKRIFYGI 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +      F  S K +       YL  RG+D + I+ F +G+       +++ + Q     
Sbjct: 121 LHEINKTFIDSWKYSFSYSAKRYLQRRGLDQNTIQHFSIGFGSIFDDKIKKKIIQMKNYS 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPET 239
             + E G+ I  +      ++F NR+ FPIR+ RG ++AFGGRT+       KY+NSPE+
Sbjct: 181 HHLKEIGI-IKINEKGRILNKFHNRITFPIRNRRGMIVAFGGRTILNDHIQPKYINSPES 239

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           ++F KGK LY  +  +            +N  S +++VEGYMDV+SL Q  +   V+ LG
Sbjct: 240 VIFKKGKILYGMYEVIKE----------QNHPSKLLVVEGYMDVISLKQFQINYAVAILG 289

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+LTE  ++ ++K +  +V CFDGD  G  AA++ + +++ ++    +  F+ L  G DP
Sbjct: 290 TSLTENHVKTIFKFTNSVVFCFDGDQAGYSAAWRTLKIIISYMEDDRQARFMFLPNGYDP 349

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D  IR  GK  FEK I +S  L   L+ R  +    +  + +A     +   I  I    
Sbjct: 350 DKIIREEGKEKFEKRIEKSHLLSYFLFNRFKKKIDLSNNEGKARFSTLVSPIIYKIPGYV 409

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +      +   +                      + R  K P +  +Q    K K    
Sbjct: 410 FKKCMFNELSHIIGVSI------------------QDRSIKKPLKSTIQKKSPKIKKLGN 451

Query: 480 PSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            S   + L+  LI +P  ++      ++          KL+  +F+           ++ 
Sbjct: 452 QSRTISILIKLLIKNPNFVRYFPNFNISKYENIKLFGIKLFLKIFNICRNYPEIDSNQLE 511

Query: 539 QRLCERGFGELLKQ--------LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
           +R         LK+        L++++       A      + V + +   ++  ++  L
Sbjct: 512 KRFNNDVLFRKLKEDSENHNFFLEKKIERRIFQDAMFHLTSIAVNERFNFLISKERKIGL 571

Query: 591 LSRQKEEIEK 600
             ++KEE+ +
Sbjct: 572 NIKEKEEVLR 581


>gi|226355338|ref|YP_002785078.1| DNA primase [Deinococcus deserti VCD115]
 gi|226317328|gb|ACO45324.1| putative DNA primase [Deinococcus deserti VCD115]
          Length = 572

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 159/620 (25%), Positives = 261/620 (42%), Gaps = 56/620 (9%)

Query: 21  IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80
           IG++V           G     CPFH EK+PSF  +  +G+YYCF C   GD  SF+   
Sbjct: 2   IGEHVRLTPAGK----GRLKGLCPFHKEKSPSFQVDTEQGYYYCFGCKAGGDIFSFVQRT 57

Query: 81  LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRL 140
              SF +++++LA  AG+ +     + +  EK   DL  +   A ++F   L        
Sbjct: 58  ENLSFGDAMRKLAEQAGIQV-----EAKYGEKSSRDLYDVNAFALEYFREHL----PGVA 108

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
             YL  RG+    I  F+LGYAPD    L +  R KG SE +++EAGLLI+   S   YD
Sbjct: 109 LEYLRRRGLTDETIAAFELGYAPDGWDGLLKRARTKGLSERQLLEAGLLIENPESGRVYD 168

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260
           RFR R++FPIR   G+++ +GGR L      KYLN+PET  F KG+ LY    A  +L+ 
Sbjct: 169 RFRGRVMFPIRDHLGRLVGYGGRVL-DDTKPKYLNTPETEAFRKGELLYGLDKARTHLK- 226

Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-WKLSPRIVL 319
                      S +++VEGYMDV+++ Q G    V+SLGTALT     LL    + ++ L
Sbjct: 227 ---------GGSELVVVEGYMDVITMHQHGFTGAVASLGTALTAEHATLLERLGAQKLTL 277

Query: 320 CFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESL 379
            FD D+ GL+A    +D VL       RV    +  G+DP   +         + +   L
Sbjct: 278 MFDQDEAGLKATLSGLDQVLGAK---FRVRATSVPSGKDPADALLAGDIVGIRQALTSGL 334

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
             V    +   E    +T + +  + + L   + ++ D            ++++ +  + 
Sbjct: 335 DEVHYRVQAAVEAHGLSTSEGKRRVLMQLLPRMQNL-DP------LDEGAEQMRTIACEQ 387

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
           +      G   +        K   ++L  + L      +    RE ALL  L+  P++  
Sbjct: 388 L------GIKPEALMEWIASKAKRRQLTDTHLAGMSTHRTEEDRELALLRQLLVDPSL-- 439

Query: 500 EQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
                LA +        + +   + +    Q    P+ I      +   +LL +L  + R
Sbjct: 440 -----LAKLDGSTPWRNESVRKVMLAA---QGAHSPDAILDVFRGQPEEQLLIRLMFEGR 491

Query: 559 DAGLWSATT----EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           DAG          E N+          + +      +  + + ++KQ+       +    
Sbjct: 492 DAGTIGRANSQQYEQNVNAYAAAAVDDIQVSMSIDSMRAEVDLLKKQVMAAPPAEQLSML 551

Query: 615 AILISILHEVHIQIHQIESQ 634
             +  +   +  +     S 
Sbjct: 552 KQIQELQRAIEAEKRARRSS 571


>gi|317181300|dbj|BAJ59084.1| DNA primase [Helicobacter pylori F57]
          Length = 559

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 144/595 (24%), Positives = 247/595 (41%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLKKSGS-----SYMACCPFHEERSASFSVNQMKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I  FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YSIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TLSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        +  +   +  ++ + +    +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMANSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +       +          +             
Sbjct: 393 EYKPLIASLLQAPLHVLGIRERASFQPFYPKTEKPNHAQKWVNAPSTL--------SLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S+   +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557


>gi|317178319|dbj|BAJ56107.1| DNA primase [Helicobacter pylori F30]
          Length = 559

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 146/595 (24%), Positives = 249/595 (41%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I  FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKERRRG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        +  +   +  ++ + +    +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMANSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +             +      LV    +     
Sbjct: 393 EYKPLIASLLQAPLHVLGIRERASFQPF--------YPKTEKPNHIQKLVNAPSALSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S+   +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557


>gi|208433987|ref|YP_002265653.1| DNA primase [Helicobacter pylori G27]
 gi|208431916|gb|ACI26787.1| DNA primase [Helicobacter pylori G27]
          Length = 559

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 145/595 (24%), Positives = 253/595 (42%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    + L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNIALEY----DKGVYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I+ FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIKAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP++ LF
Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQSKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPAEM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        + L+   +  ++ + +R  ++   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKDLLSRPMAFIEFVLRRMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +             +  +         +     
Sbjct: 393 EYKPLIASLLQAPLHVLGVRERASFQPF--------YPKTEKPNLAQKFAHVPNTLSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S+   +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMICLKKARQAIMKLKQGELV 557


>gi|308062881|gb|ADO04768.1| DNA primase [Helicobacter pylori Sat464]
          Length = 559

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 146/595 (24%), Positives = 249/595 (41%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYCDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I  FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSIESIRAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDKKDRTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        +  +   +  ++ + +    +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +             +      LV    +     
Sbjct: 393 EYKPLIASLLQVPLHVLGIRERASFQPF--------YPKTEKPNHAQKLVNASDTLSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S+   +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557


>gi|291166411|gb|EFE28457.1| DNA primase [Filifactor alocis ATCC 35896]
          Length = 576

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 146/613 (23%), Positives = 258/613 (42%), Gaps = 58/613 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN+   FI+ +     I +++ +YV           G++   CPFH+EKTPSF  N +  
Sbjct: 1   MNFDNSFIEKIKDENDIVDVVSEYVSLK-----GTHGNWMGLCPFHNEKTPSFSVNQNGQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDL 117
           FY CF C   GD +SF+       F+++V  LA  A +PLP       + +K ++ +  L
Sbjct: 56  FYKCFGCQKSGDVISFIQEKERLEFVDAVIFLANRAMIPLPEKKEYSVEEKKVQEEKDIL 115

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +R+   A  FF   L          YL++R ++   I  F LGYAP +     +  +   
Sbjct: 116 MRINLEAARFFRECLWKNL--FALEYLEKRDLNREIILHFGLGYAPFNNDLYEKLEKFYT 173

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
             +       L  D         RF+NR++FPI + +G+VIAFGGR L+     KYLNSP
Sbjct: 174 EDDLLKSGIFLKRDNGEIT---CRFKNRVMFPIFNPKGKVIAFGGRALNDSYPPKYLNSP 230

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ETI+F K  NLY+   A   + +             +ILVEGYMD ++L + G  N V+S
Sbjct: 231 ETIIFFKKNNLYSLNFARKSIYQKD-----------VILVEGYMDTITLHRYGFSNTVAS 279

Query: 298 LGTALTEYQLRLLWKLS-PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           LGTA TE Q  LL K     + LC+D D+ G  AA +A+D+             V+L   
Sbjct: 280 LGTAFTEQQAELLKKNKVKNVYLCYDSDNAGRLAAKRAMDI---LYKQELEGKVVILDAE 336

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH----LKNCI 412
           +DPD +++ YG   FE+ +  +L ++D      + +      +++     +    LK   
Sbjct: 337 KDPDDYLKKYGPQKFEQCLTNALNIIDFELYLLSNDVDLEKENDKLLFVKNAVSVLKKYE 396

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             I +  +     +    ++       I                   +  +  + +  + 
Sbjct: 397 EKIPNSFV---LIEQALKKISFSTGISIKSLGQE----MYGKYFSPNQFHNHSIEKEHVE 449

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQE--LADIRYDNNELQKLWSFLF------- 523
           K ++      +E  L+ ++ ++   + E   +  + +  + + E + L+  L        
Sbjct: 450 KIEIDFHDYDKEKMLIDSIYHYG--IDEYITKFSIKESDFFSEENRSLFRQLLAQKKDCF 507

Query: 524 -SDFVEQKYFLPEE---IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
              F        E+   +   + +      +  L ++ R+       +     ++ +   
Sbjct: 508 EDSFSRDGICKIEDMPTLIYSIRQDNIRRSIDILKKRQREL----MQSGQCKDELIRIGI 563

Query: 580 QALALYKRFRLLS 592
             ++L K  + + 
Sbjct: 564 DIISLQKELKNIK 576


>gi|315586001|gb|ADU40382.1| DNA primase [Helicobacter pylori 35A]
          Length = 559

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 144/595 (24%), Positives = 247/595 (41%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGAYYDHKEDHHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I  FKLG   +        +  KG  ++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YGIENKGLDKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        +  +   +  ++ + +   ++   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +       +          +             
Sbjct: 393 EYKPLIASLLQAPLHVLGIRERASFQPFYPKTEKPNHAQKWVNAPSTL--------SLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S+   +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557


>gi|317011868|gb|ADU82476.1| DNA primase [Helicobacter pylori Lithuania75]
          Length = 559

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 146/595 (24%), Positives = 252/595 (42%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+      SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGAYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I+ FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSIESIKAFKLGLCTNRID---YSIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP++ LF
Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQSKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N  ++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNATATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRNAAYKASLMLAKEQRKG---GVILFENNLDPAEM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        + L+   +  ++ + +R  ++   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKDLLSRPMAFIEFVLRRMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +             +  +         +     
Sbjct: 393 EYKPLIAALLQAPLHVLGIRERASFQPF--------YPKTEKPNLAQKFAHVPNTMGLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S+   +  +   +  +QA+   K+  L+
Sbjct: 503 LKEGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557


>gi|254797280|ref|YP_003082122.1| DNA primase [Neorickettsia risticii str. Illinois]
 gi|254590521|gb|ACT69883.1| DNA primase [Neorickettsia risticii str. Illinois]
          Length = 579

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 160/628 (25%), Positives = 279/628 (44%), Gaps = 56/628 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           + +I+ +   IP+S ++ + V   R  +          CPFH EKTPSF  ND   F+YC
Sbjct: 3   KKYIELIKERIPVSEVVSRTVKLKRVGS-----RLVGRCPFHQEKTPSFSVNDKGKFFYC 57

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C   GD + F+S        E+V+ LA+  G+ +   +   EK  ++     + +E  
Sbjct: 58  FGCGKSGDVIDFISLTKRLDLNEAVEELASSIGIKIDKKNSGTEKFVQV----FQFLEEL 113

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
            D+F ++L +   +   YY+  R  D   I  FKLGY P          + K F    I 
Sbjct: 114 RDWFCNNLNSRVAQEASYYIRNRL-DDDVISEFKLGYCP--SNLTSFINKTKNFPSTVIK 170

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
            +G+L            FR+RL+FPI + +G+VI FG R + +G   KY+NS ET  F K
Sbjct: 171 SSGVLDKLGR-----CYFRDRLVFPINNVQGKVIGFGSRVIKEGILPKYINSCETDFFKK 225

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            + LYN               + +NS   IILVEGYMDV+SLCQ G ++V+  LGT++T 
Sbjct: 226 SEVLYNIDR------------IPKNSEEPIILVEGYMDVISLCQFGYKSVLGVLGTSITS 273

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN--FVLLSRGEDPDSF 362
           + L++L +L   ++ CFDGD+ G++AA + ++L++   I    +   F  L  G+DPD  
Sbjct: 274 HHLKVLNRLGRNLIFCFDGDNAGIKAAERVVELIMDEFINSLEIKTTFSFLPVGKDPDDL 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +R     AF++++  +  L D ++      R  ++P++  +LE  L+  + ++KD K+R 
Sbjct: 334 VRSDRA-AFQRVLDGARSLSDTIFFLAKYGRQCSSPEDFIDLEKILEKYLTNVKDYKIRK 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
           ++    + R+  L +     +        ++A              + + K         
Sbjct: 393 HFQDFFQQRIFLLKRSLRPRNFISTYKGSEDAMRFVDARKLSSSASTHVDKKV------- 445

Query: 483 REAALLLTLINHPAILQ--EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
               LL  +I  P +LQ  ++ +  + ++  +    KL SF+              + + 
Sbjct: 446 ---LLLKIVIKFPEVLQNGDREEYFSLLKLSDPRHVKLQSFIVQLLNTSNDISSTSLERA 502

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L           L      A     +  A++ D  +         ++   L   +EE  +
Sbjct: 503 L-----------LANTETAASYKLLSDLASLPDNIEKATFLWDKLQKQLWLDELREEYRR 551

Query: 601 QIAQVT-AKGEAEKTAILISILHEVHIQ 627
            I      +G+ E+   ++  + E   +
Sbjct: 552 MIHTSDLDEGKMEEAQRILVKIREAEKE 579


>gi|296327932|ref|ZP_06870467.1| DNA primase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296154888|gb|EFG95670.1| DNA primase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 603

 Score =  277 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 155/633 (24%), Positives = 277/633 (43%), Gaps = 43/633 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M + ++ I  LL ++ I  ++G++++  +  +      Y   CPFH +  PSF     K 
Sbjct: 1   MYFKQEDIDKLLDNLRIEEVVGEFIELKKVGS-----SYRGLCPFHADTNPSFFVTPEKK 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              CF C   G+ ++F S +   S+ E+++ L+    + +           +      ++
Sbjct: 56  ICKCFVCGSGGNAINFYSKIKNISYTEAIRELSQKYRINIKEYKNTNT--NENYEKFYQI 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E + +FF   + +   +    YL  RG+D++ I+  +LGYAP     L E L  KG+S+
Sbjct: 114 MEDSHNFFMEKIFSQDSRGALEYLSNRGLDTNLIKEHQLGYAPPKWSELYELLNAKGYSD 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239
           E ++  GL I        YD FRNR+IFPI S  G++IAFGGRTL K     KY+NSP+T
Sbjct: 174 EDLLALGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRTLEKDTSVPKYINSPDT 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGKN Y    A+N   K           ++ IL+EGYMDVLS    G    ++ LG
Sbjct: 233 PIFKKGKNAYGIERAVNIKNK-----------NYSILMEGYMDVLSANIYGFDTSIAPLG 281

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q +L+ + S  I+L FD D  G+ A  +A          G  +  +     +DP
Sbjct: 282 TALTEEQAQLIKRYSSNILLSFDMDKAGISATERA---SFILKSQGFNIRVLQFEESKDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS-FNTPDERAELEIHLKNCINHIKDQ 418
           D F++  G+ AF K++  SL + D L+   +      N    +       K+  +++ + 
Sbjct: 339 DEFLKKNGREAFLKVVENSLEIFDFLYNLYSSEYDLNNNIIAKQNFVERFKDFFSNVDND 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +  Y + + +++               +       + D+            ++ K  K
Sbjct: 399 LEKEMYLKKLSEKIDISIDVLRKTLVEQNKKHVTRKDYLDENQEK--------IEKKEFK 450

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           + +  E A++  L+  P       +E  +    N   +     +  +       + +E  
Sbjct: 451 QANNLEMAIVKMLLRKPEYYNFFKEEKLESDIANRIFKFFNQKIKENLFFDSNIIMKEFK 510

Query: 539 QRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-----L 590
           + + E       E   +L R + D  L     E    ++ + ++  L +  + R      
Sbjct: 511 KYVEESNDFSQYEKNNELARIIMDYILIPNKIEEERENI-ELFKSYLRVKLKLRDKTKDD 569

Query: 591 LSRQKE--EIEKQIAQVTAKGEAEKTAILISIL 621
           ++++ E  +++K+IA+  +  E  K       L
Sbjct: 570 IAKKIEFGKLKKEIAKAKSVEEFIKVYNSFKYL 602


>gi|118586867|ref|ZP_01544301.1| DNA primase [Oenococcus oeni ATCC BAA-1163]
 gi|118432699|gb|EAV39431.1| DNA primase [Oenococcus oeni ATCC BAA-1163]
          Length = 627

 Score =  277 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 141/632 (22%), Positives = 275/632 (43%), Gaps = 33/632 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+  I+++   I I ++IG+ VD  ++        +W  CPF  E +PSF  ++    Y
Sbjct: 19  IPKSTIEEIRNSINIVDVIGKDVDLKKKGK-----YFWGICPFVSENSPSFTVDEENQRY 73

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120
            C+SC   G+   ++S   G SF ++V  +A   G+ +     +       + +  LI L
Sbjct: 74  KCYSCGRSGNVFDYVSEKKGLSFPQAVIEVARNVGIKIDSKYTENTGGHFNENELKLIEL 133

Query: 121 IEVATDFFHHSLKNAR--DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A++ F H L N       L Y L+ER +    I  F+LG+ P           +K  
Sbjct: 134 NKQASEIFTHLLLNTDLSTNALKYLLEERHLSRETIADFQLGFLPSQWSLHDFFEEKKIP 193

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            E ++     +I   +  + +D F NR++FP++ S G ++ F GRTL K  S KY+NS E
Sbjct: 194 VETQLESG--IISQYDDGSFHDVFSNRIMFPLKDSYGNIVGFSGRTLDKNNSAKYINSKE 251

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K K LY+F  A    + S +          ++L+EGY+DV++  +AG+   ++S+
Sbjct: 252 TAVFKKSKLLYHFDVAKQAAKVSQK----------LLLLEGYLDVIAAHKAGIDYGIASM 301

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT+ QL+L+ + +P++ + +DGD  G  A ++AI+ +        ++  V +   +D
Sbjct: 302 GTSLTKDQLQLISRNTPKLTIAYDGDSAGQSATWRAIEEIKNFPH--LQLEIVTIPNQKD 359

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD +++  G  A +K    +S  + D  ++   + R+       ++    L N +N   D
Sbjct: 360 PDEYLQRNGPDALKKIFEEDSTSINDFAFEYLKKGRNLENVGNLSDYTNDLLNFLNEHPD 419

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                   + + D+                    K    +  +      +++S  +  L 
Sbjct: 420 PIANDLTLKKLSDQFGLSRSVLDQSLKRNDIDVSKRQVGQSSRQNDNPPLKNSRNRNPLI 479

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + ++ E  ++++ I H  +  E  ++ A   + + + Q L+ FL   +  +        
Sbjct: 480 DQEAMIERKIIVSSIYHENVFHEI-EKKAKFTFHDPKNQ-LYYFLIKGYRSKHPGTQSIG 537

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +      E       + +   L S   +    D  +     L    R     +Q ++
Sbjct: 538 INLMKNMTASE-------KDQFNHLISDQIDFYSTDNLEAIDDYLWQLNRRIPFEKQIQQ 590

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           I++QI +     + ++   L   L ++  +  
Sbjct: 591 IKQQIQEAINLNQNDRIKELNVKLVKLMKERA 622


>gi|46199200|ref|YP_004867.1| DNA primase [Thermus thermophilus HB27]
 gi|46196825|gb|AAS81240.1| DNA primase [Thermus thermophilus HB27]
          Length = 590

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 141/626 (22%), Positives = 251/626 (40%), Gaps = 61/626 (9%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           ++ +   + +  ++ +YV           G +   CPFH EKTPSF+ ++ KG +YCF C
Sbjct: 7   VELIKSRLSLREVVSRYVALKPAGR----GRWKGLCPFHQEKTPSFYVDEEKGLFYCFGC 62

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
              GD  +F+    G  F E+++RLA  AGV LP       K  + + +L+ ++ +A  +
Sbjct: 63  KAGGDLFAFVQRAEGLDFPEALERLAEEAGVELPRR-----KAPERRRELLEVLALAQTY 117

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
           F   L          YL +RG+   ++  F LGYAP     L   L + G + E+ + AG
Sbjct: 118 FLEHLHAH--PEALAYLRKRGLTEESVARFGLGYAPPKGDGLVAFLARHGVAPEEGVRAG 175

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247
           +L +        DR R+R+ FPI+ + G+V+AF GR L +    KYLN+PET LF K + 
Sbjct: 176 VLAERQG--RFVDRLRHRITFPIKDAFGRVVAFTGRALGED-GPKYLNTPETPLFRKQEV 232

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           L+ +  A   L+               I+VEG  D ++L Q G    V+ LG+ L+E Q 
Sbjct: 233 LFAYPEARPALR-----------EGRAIVVEGLFDAIALHQLGFPETVAVLGSGLSEGQA 281

Query: 308 RLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS-FIRC 365
            LL K     + L FD D+ G +A  ++++L L        + + +    +DP    +  
Sbjct: 282 LLLKKAGVLEVYLAFDADEAGQKATLQSLNLELAP----RFLFYAVRLPAKDPGELLLHP 337

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            G+  F+K + E+LP V   ++  +     + P+ + ++   L   +       L     
Sbjct: 338 EGRALFQKALEEALPEVAFRFEEASRGLDLSRPEHKRKVLEALTPRM-------LTPEPF 390

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             + +RL+ L  + +         +  + R R +                   K  L E 
Sbjct: 391 DPVAERLKALVVERLGLSPKSLEDYLASLRTRGRP-----APPPPPPPLTPGNKTLLLEL 445

Query: 486 ALLLTLINHPAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             +  L++ P   +   + +  +                +   ++               
Sbjct: 446 DAIALLLSAPE--ERFLELVDYVETQVWPPEGSFLGEFLALARKEPRRDH---------- 493

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                L Q +   R               +++     LA   R   L  +  +++  +AQ
Sbjct: 494 -LRRTLSQREEGGRLFERLLLAPRGEDPRLQEKLDHTLA-RLREAYLQERLAKVKAALAQ 551

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQ 630
                +      L+    E+ + I  
Sbjct: 552 ---NPDPPTLERLLKEYQEIRVAIEA 574


>gi|55981229|ref|YP_144526.1| DNA primase [Thermus thermophilus HB8]
 gi|55772642|dbj|BAD71083.1| DNA primase [Thermus thermophilus HB8]
          Length = 590

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 141/626 (22%), Positives = 251/626 (40%), Gaps = 61/626 (9%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           ++ +   + +  ++ +YV           G +   CPFH EKTPSF+ ++ KG +YCF C
Sbjct: 7   VELIKSRLSLREVVSRYVALKPAGR----GRWKGLCPFHQEKTPSFYVDEEKGLFYCFGC 62

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
              GD  +F+    G  F E+++RLA  AGV LP       K  + + +L+ ++ +A  +
Sbjct: 63  KAGGDLFAFVQRAEGLDFPEALERLAEEAGVELPRR-----KAPERRRELLEVLALAQTY 117

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
           F   L          YL +RG+   ++  F LGYAP     L   L + G + E+ + AG
Sbjct: 118 FLEHLHAH--PEALAYLRKRGLTEESVARFGLGYAPPKGDGLVAFLARHGVAPEEGVRAG 175

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247
           +L +        DR R+R+ FPI+ + G+V+AF GR L +    KYLN+PET LF K + 
Sbjct: 176 VLAERQG--RFVDRLRHRITFPIKDAFGRVVAFTGRALGED-GPKYLNTPETPLFRKQEV 232

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           L+ +  A   L+               I+VEG  D ++L Q G    V+ LG+ L+E Q 
Sbjct: 233 LFAYPEARPALR-----------EGRAIVVEGLFDAIALHQLGFPETVAVLGSGLSEGQA 281

Query: 308 RLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS-FIRC 365
            LL K     + L FD D+ G +A  ++++L L        + + +    +DP    +  
Sbjct: 282 LLLKKAGVLEVYLAFDADEAGQKATLQSLNLELAP----RFLFYAVRLPAKDPGELLLHP 337

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            G+  F+K + E+LP V   ++  +     + P+ + ++   L   +       L     
Sbjct: 338 EGRALFQKALEEALPEVAFRFEEASRGLDLSRPEHKRKVLEALTPRM-------LTPEPF 390

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             + +RL+ L  + +         +  + R R +                   K  L E 
Sbjct: 391 DPVAERLKALVVERLGLSPKSLEDYLASLRTRGRP-----APPPPPPPPIPGNKTLLLEL 445

Query: 486 ALLLTLINHPAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             +  L++ P   +   + +  +                +   ++               
Sbjct: 446 DAIALLLSAPE--ERFLELVDYVETQVWPPEGSFLGEFLALARKEPRRDH---------- 493

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                L Q +   R               +++     LA   R   L  +  +++  +AQ
Sbjct: 494 -LRRTLSQREEGGRLFERLLLAPRGEDPRLQEKLDHTLA-RLREAYLQERLAKVKAALAQ 551

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQ 630
                +      L+    E+ + I  
Sbjct: 552 ---NPDPPTLERLLKEYQEIRVAIEA 574


>gi|317008690|gb|ADU79270.1| DNA primase [Helicobacter pylori India7]
          Length = 559

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 137/524 (26%), Positives = 222/524 (42%), Gaps = 39/524 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNPIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+ A    SF+E++++LA    + L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNIALEY----DKGVYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I+ FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIKAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +I  G+L   D    +Y RF +R++FPI +   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIGLGVLGKSDKKDKTYLRFLDRIMFPIYNPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+D + L QAG +N  ++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDAILLHQAGFKNATATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     VL     DP   
Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVVLFENNLDPAEM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        + L+   +  ++ + +R  ++   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKDLLSRPMAFIEFVLRRMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +             +            +     
Sbjct: 393 EYKPLIASLLQAPLHVLGIRGPASFQPF--------YPKTEKPNHAQKFANAPNTMSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNN--ELQKLWSFLFS 524
            E  ++  L+   ++L      +    + +   E   L      
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQEFDALCQEKLD 488


>gi|261749375|ref|YP_003257060.1| DNA primase [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
 gi|261497467|gb|ACX83917.1| DNA primase [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
          Length = 614

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 144/650 (22%), Positives = 267/650 (41%), Gaps = 61/650 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ IK +     I  +IG ++   +   N     Y    PF +EKTPS   +  K  +
Sbjct: 2   ISKETIKRIFSVSCIEEVIGDFISLKKSGLN-----YRGLSPFSNEKTPSLIVSPIKKIW 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
             FS    G+ ++FL      +++ES+  LA    + +         ++    +L  + +
Sbjct: 57  KDFSSGKGGNIITFLMEHENYTYVESLHYLAKKYDIKIQEEKKNTFIRKIDHENLYLIQD 116

Query: 123 VATDFFHHSLKNARDKRL---HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            A  FF   L   ++ +     Y + +RG++   I  F+LG+AP       E   +KGF 
Sbjct: 117 YAKCFFMKQLSYTKEGQEIGLIYLMKQRGLNMKIIHQFELGFAPSFWTKFTETALKKGFQ 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238
            + + ++GL     ++   +D FR R++FPI    G+VI FGGR +       KYLNS E
Sbjct: 177 IQDLKKSGLTGFKRSNH--FDCFRKRVMFPIHDLSGRVIGFGGRKIDNSSRSIKYLNSSE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
             +F K K LY  F A   + K               LVEGY DVLSL Q+G++NVVSS 
Sbjct: 235 NDIFQKSKILYGLFQAQKNILK----------EDLCYLVEGYTDVLSLHQSGIKNVVSSS 284

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT  Q+ L+ + +  IVL +DGD  G++A+ + I++    L     +  +    GED
Sbjct: 285 GTSLTIDQILLIKRFTKSIVLFYDGDRSGIQASLRVINM---ILEQEMDLRILFFYNGED 341

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD   + Y  +   + + +         K+  E    + P +++ L  ++   I+ I + 
Sbjct: 342 PDYLAKKYSSSQLREFLGKKSYHFISFKKKIYEKFHQDDPIKKSFLVSNILKSISKIPNL 401

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y Q      Q   +  I E     +  K   +  +             +  + + 
Sbjct: 402 LQRELYIQETSKLFQLRQEVLIYELERINKKKKLYKKIENH---------PIRLNSERNN 452

Query: 479 KPSLREAALLLTLINHPA------------ILQEQYQELAD--IRYDNNELQKLWSFLFS 524
              L E  L+  ++N+              + +E +    D   R+  +  QK++  +  
Sbjct: 453 TLLLLEEKLIQLILNYGNKIFKKGGTHTTTVFEEIFHTFQDYNFRFSLDSHQKIFDKIC- 511

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
              E     P  + +   ++                        ++  +    Y   + L
Sbjct: 512 LQKENLEKNPSFVVEDEKKK---------KSYSLSQWNRKGIEVSSQEENIDRYLMDILL 562

Query: 585 YKR----FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             +     +L+ ++    +K+I +   +   +K   L ++ +E++ ++H+
Sbjct: 563 RYKTQYILKLIQQEIRNFQKEIRRDKNQMILKKIMYLTNLKNELNKKLHR 612


>gi|71466860|emb|CAH41004.1| DnaG protein [Oenococcus oeni]
          Length = 613

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 141/632 (22%), Positives = 274/632 (43%), Gaps = 33/632 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+  I+++   I I ++IG+ VD  ++        +W  CPF  E +PSF  ++    Y
Sbjct: 5   IPKSTIEEIRNSINIVDVIGKDVDLKKKGK-----YFWGICPFVSENSPSFTVDEENQRY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120
            C+SC   G+   ++S   G SF ++V  +A   G+ +     +       + +  LI L
Sbjct: 60  KCYSCGRSGNVFDYVSEKKGLSFPQAVIEVARNVGIKIDSKYTENTGGHFNENELKLIEL 119

Query: 121 IEVATDFFHHSLKNAR--DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A++ F H L N       L Y L+ER +    I  F+LG+ P           +K  
Sbjct: 120 NKQASEIFTHLLLNTDLSTNALKYLLEERHLSRETIADFQLGFLPSQWSLHDFFEEKKIP 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            E ++     +I   +  + +D F NR++FP++ S G ++ F GRTL K  S KY+NS E
Sbjct: 180 VETQLESG--IISQYDDGSFHDVFSNRIMFPLKDSYGNIVGFSGRTLDKNNSAKYINSKE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K K LY+F  A    +           S  ++L+EGY+DV++  +AG+   ++S+
Sbjct: 238 TAVFKKSKLLYHFDVAKQAAK----------VSQKLLLLEGYLDVIAAHKAGIDYGIASM 287

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT+ QL+L+ + +P++ + +DGD  G  A ++AI+ +        ++  V +   +D
Sbjct: 288 GTSLTKDQLQLISRNTPKLTIAYDGDSAGQSATWRAIEEIKNFPH--LQLEIVTIPNQKD 345

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD +++  G  A +K    +S  + D  ++   + R+       ++    L N +N   D
Sbjct: 346 PDEYLQRNGPDALKKIFEEDSTSINDFAFEYLKKGRNLENVGNLSDYTNDLLNFLNEHPD 405

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                   + + D+                    K    +  +      +++S  +  L 
Sbjct: 406 PIANDLTLKKLSDQFGLSRSVLDQSLKRNDIDVSKRQVGQSSRQNDNPPLKNSRNRNPLI 465

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + ++ E  ++++ I H  +  E  ++ A   + + + Q L+ FL   +  +        
Sbjct: 466 DQEAMIERKIIVSSIYHENVFHEI-EKKAKFTFHDPKNQ-LYYFLIKGYRSKHPGTQSIG 523

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +      E       + +   L S   +    D  +     L    R     +Q ++
Sbjct: 524 INLMKNMTASE-------KDQFNHLISDQIDFYSTDNLEAIDDYLWQLNRRIPFEKQIQQ 576

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           I++QI +     + ++   L   L ++  +  
Sbjct: 577 IKQQIQEAINLNQNDRIKELNVKLVKLMKERA 608


>gi|329766844|ref|ZP_08258373.1| hypothetical protein HMPREF0428_00070 [Gemella haemolysans M341]
 gi|328838570|gb|EGF88176.1| hypothetical protein HMPREF0428_00070 [Gemella haemolysans M341]
          Length = 596

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 144/633 (22%), Positives = 254/633 (40%), Gaps = 47/633 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              +  I  +  +I I +L+ +YV  ++R  N     Y   CPFH+EKTPSF  +  K  
Sbjct: 3   KISKQDIDYIFDNIDIVSLVSEYVKLEKRGQN-----YLGLCPFHNEKTPSFTVSPEKKI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119
            +CF C   G+   F+S +   ++ +++ +L A  G+ +          +       +  
Sbjct: 58  AHCFGCGKGGNIFQFVSIIENITYNQAIVKLGARLGLNIESKVNLEANYDLNNELDIMYY 117

Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              +  D++++  L     +    YL  RG+    I+ F +GYAP               
Sbjct: 118 GHMLLADYYNYILLNTKEAEEALNYLLNRGLSIDVIKHFNIGYAPRDNNIALNFFNSNQI 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237
           S + ++EAGLL   + S   YD F++R++FPI++++ QV+AF GRT+S  +SV KY N+ 
Sbjct: 178 SLDLMVEAGLLGK-NESGNYYDVFKDRVMFPIKNNQNQVVAFSGRTMSTDKSVAKYYNTH 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +F K   LYNF  A  ++ K           + +IL EGYMDV+   Q G++N V+ 
Sbjct: 237 ETKIFEKRTVLYNFSDARAFIAK----------ENEVILCEGYMDVIKAHQNGIKNAVAL 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT +   +L+ +  L  ++ L  D DD G   +   I++    +   + V  +  S  +
Sbjct: 287 MGTNIDNNKLKEILSLVKKVTLSLDNDDAG---SKAQIEIGNRIIQTTDNVYKLKFSGAK 343

Query: 358 DPDSFIRCYGKT----AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
           D D F+               I  +            +N S    + R + +  L   I 
Sbjct: 344 DLDEFLSDKNSKNKDFDAVNYIKNNKEHFINYKIEYCKNDSKTNIELRIQYKNELLKNIA 403

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           +++D+ LRY     + +      Q  + E        K+ A          +L + +   
Sbjct: 404 YMEDESLRYILLTNLAEEFGIERQVLLRELGQVNVKRKQAAVEWVAPSNPAQLFRVTNYD 463

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            KL K        L        A+  E+Y ++    +       L  FL   +     F 
Sbjct: 464 KKLCK--------LFKYFFVDRALFIEKYNDIEKCNFPQEVFVNLMDFLVIYYNNNLEFH 515

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             +    + +     L   +D             E   V+V   Y +  +  +       
Sbjct: 516 IHKFIHSIEDDEVVRLATYIDETD------FLIEENPTVEVVSDYIKYFSDNQIT----- 564

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
             EEI+ ++     + + E    L+S L +   
Sbjct: 565 -LEEIKDRLRVAIQEMDVETQKELLSQLKKYKK 596


>gi|19704654|ref|NP_604216.1| DNA primase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19714960|gb|AAL95515.1| DNA primase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 603

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 155/633 (24%), Positives = 277/633 (43%), Gaps = 43/633 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M + ++ I  LL ++ I  ++G++++  +  +      Y   CPFH +  PSF     K 
Sbjct: 1   MYFKQEDIDKLLDNLRIEEVVGEFIELKKVGS-----SYRGLCPFHADTNPSFFVTPEKK 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              CF C   G+ ++F S +   S+ E+++ L+    + +           +      ++
Sbjct: 56  ICKCFVCGSGGNAINFYSKIKNISYTEAIRELSQKYRINIKEYKNTNT--NENYEKFYQI 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E + +FF   + +   +    YL  RG+D++ I+  +LGYAP     L E L  KG+S+
Sbjct: 114 MEDSHNFFMEKIFSQDSRGALEYLSNRGLDTNLIKEHQLGYAPPKWSELYELLNAKGYSD 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239
           E ++  GL I        YD FRNR+IFPI S  G++IAFGGRTL K     KY+NSP+T
Sbjct: 174 EDLLALGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRTLEKDTSVPKYINSPDT 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGKN Y    A+N   K           ++ IL+EGYMDVLS    G    ++ LG
Sbjct: 233 PIFKKGKNAYGIERAVNIKNK-----------NYSILMEGYMDVLSANIYGFDTSIAPLG 281

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q +L+ + S  I+L FD D  G+ A  +A          G  +  +     +DP
Sbjct: 282 TALTEEQAQLIKRYSSNILLSFDMDKAGISATERA---SFILKSQGFNIRVLQFEESKDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS-FNTPDERAELEIHLKNCINHIKDQ 418
           D F++  G+ AF K++  SL + D L+   +      N    +       K+  +++ + 
Sbjct: 339 DEFLKKNGREAFLKVVENSLEIFDFLYNLYSSEYDLNNNIIAKQNFVERFKDFFSNVDND 398

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +  Y + + +++               +       + D+            ++ K  K
Sbjct: 399 LEKEMYLKKLSEKIDISIDVLRKTLVEQNKKHVTRKDYLDENQEK--------IEKKEFK 450

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           + +  E A++  L+  P       +E  +    N   +     +  +       + +E  
Sbjct: 451 QANNLEMAIVKMLLRKPEYYNFFKKEKLESDIANKIFKFFNQKIKENLFFDSNIIMKEFK 510

Query: 539 QRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL----- 590
           + + E       E   +L R + D  L     E    ++ + ++  L +  + R      
Sbjct: 511 KYVEESNDFSQYEKNNELARIIMDYILIPNKIEEERENI-ELFKSYLRVKLKLRDKTKDN 569

Query: 591 LSRQKE--EIEKQIAQVTAKGEAEKTAILISIL 621
           ++++ E  +++K+IA+  +  E  K       L
Sbjct: 570 IAKKIEFGKLKKEIAKAKSVEEFIKVYNSFKYL 602


>gi|330443840|ref|YP_004376826.1| DNA primase [Chlamydophila pecorum E58]
 gi|328806950|gb|AEB41123.1| DNA primase [Chlamydophila pecorum E58]
          Length = 599

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 146/598 (24%), Positives = 246/598 (41%), Gaps = 43/598 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y    +++L   I I +++ ++V   R         Y ACCPFH EKTPSF  N +  +Y
Sbjct: 2   YTEQSLENLRHAIDIVDVLSEHVHLKRSGA-----TYKACCPFHTEKTPSFIVNPTGAYY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120
           +CF C   GD +SFL   LG SF E+V  LA    V L V   +         + +L R+
Sbjct: 57  HCFGCGAHGDAISFLMQYLGYSFTEAVLVLAKRFHVELEVASKEARVSSSSGAKEELRRI 116

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
                 FF + L +     +   YL +RGI    I+ F LGYAP+ +  L+    +    
Sbjct: 117 NYEVEKFFRYCLFHLPEGLQALRYLYQRGISPDVIDRFHLGYAPEQQVFLQGMQDKHITQ 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPE 238
           ++                ++  F  R+IFPI  + G  + F  R  L   +  KY+N+PE
Sbjct: 177 KQLQE-------SGFFGGNWFLFSRRIIFPIHDALGHTLGFSSRKFLEGMQGSKYVNTPE 229

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T+LF K + LY    +   + K  R          +ILVEG  D L +  +G    ++  
Sbjct: 230 TLLFKKSRILYGLHCSRRRITKEKR----------VILVEGQADCLQMIDSGFNCTLAVQ 279

Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           GTA TE  ++ L      ++ L FD D  G +AA +  DL       G  V+   L  GE
Sbjct: 280 GTAFTEDHVKELEKLGILKVFLLFDNDAAGNKAALRVGDLCQV---AGMAVSVARLPDGE 336

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD+F+   G +A  +L+ +S   +  L   + +     +P E+A +   +   I    +
Sbjct: 337 DPDTFLMLRGHSALIELLEKSENYLAFLIGEKIKAYPNFSPQEKALVVEEIVRQIKRWGN 396

Query: 418 QKLRYYYSQAIRDRL---QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
             L Y + + +   +   + +           G +         +     R+    +++ 
Sbjct: 397 PVLVYEHLKQLASLMTIPEDMVFALAQPQVKAGTFSPSAPPSSSKTQIIPRIHSDVIIET 456

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ-KYFL 533
            + +     +A  L      P   Q  +   +   + + E ++L++FL S +  Q K   
Sbjct: 457 DVLRCMLFCKAEDLYI----PYTAQYYF---SPSDFKHPECKRLFAFLISYYETQKKNAS 509

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
            EE    L +    +LL +  R++    L +    A      + ++       +   L
Sbjct: 510 LEEALAELSDPKIIDLLTK--RRINTEILSTIFLNALRKLSDRLWRDKNLSSVKSMAL 565


>gi|325295046|ref|YP_004281560.1| DNA primase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065494|gb|ADY73501.1| DNA primase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 552

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 140/625 (22%), Positives = 245/625 (39%), Gaps = 87/625 (13%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P  FI+++L  + I +++  Y+   +   N     Y A CPFH EKTPSF  +  K  
Sbjct: 5   KIPYSFIQEILSRVDIVDIVSNYIQLKQVGRN-----YTALCPFHPEKTPSFVVSPEKQI 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           + CF C + G+ ++F+      SF E+V+R+A IAG+ LP    + E+  +I+    R  
Sbjct: 60  FKCFGCGIGGNAITFVEKYENLSFSEAVRRVAEIAGIELPSHFKENEESFQIEEAGYR-- 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             A  +FH  L +     +  YL ERGI     + F +GYAP           +      
Sbjct: 118 --AASYFHSKLSS-----ILSYLKERGISEKEAKKFLIGYAPQGYSKELNLNPKLAKELG 170

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETI 240
            +           +A   + F  RLI PI +  G+++AF GRTL   +S  KY+NSPE+ 
Sbjct: 171 LL-----------NAKGREFFAERLIVPIFNHFGKIVAFAGRTLKNDKSLPKYVNSPESS 219

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K   LY F+ +   + K  +          +++VEGY DV+SL + GV+NVV+ +GT
Sbjct: 220 LFKKNSILYGFYQSKETILKEKK----------VVIVEGYFDVISLHKIGVKNVVAPMGT 269

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +LTE  ++++ + +   +L FDGD  G +A  ++  L       G     V L  GEDP 
Sbjct: 270 SLTENHVKIIKQYASFPILMFDGDSAGRKATIRSAGL---FFAKGIEPFVVHLPEGEDP- 325

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +        + L+   +  +D                   E+   +    +   D   
Sbjct: 326 DSMAISNPDKLKGLLGSPISFIDWALNFVDSFPQREQIGYLKEIVGAILPLRDI--DPLR 383

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y   +  +     +  +       R                     +L      +  
Sbjct: 384 FKLYFAKLSSKYGINEKWLLLNFRFSSR--------------------KALNSENEEEFI 423

Query: 481 SLREAALLLTLIN--HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             +E   +  LI    P I      +++ + + + ++ ++ + +      Q     EEI 
Sbjct: 424 PDKEKRFVRALIEKKCPPI------QISPLNFTSQKVSQIVTLI------QNGESIEEIQ 471

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R  +         L   + +      T E  +  V    ++ L    +      + + +
Sbjct: 472 ARYPD---------LASLIAETLFLEVTEEELLKAVVSILKKELKRRMKLMKYEEKVK-L 521

Query: 599 EKQIAQVTAKGEAE-KTAILISILH 622
            K I  +  +   + +       L 
Sbjct: 522 AKLIQSLEKRDIKDFQVLRNFEQLK 546


>gi|317013436|gb|ADU80872.1| DNA primase [Helicobacter pylori Gambia94/24]
          Length = 559

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 138/524 (26%), Positives = 225/524 (42%), Gaps = 39/524 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+ A    SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNVALEY----DKSAYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I+ FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSMESIKAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDKEDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G +AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRKAAYKASLMLAKEQRKG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I  +     +  +   +  ++ + +    +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANHQIETLKNWLSRPIAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +       ++                 +     
Sbjct: 393 EYKPLIATLLQAPLHVLGIREPASFQPFYPKTEKPNRPQK--------FAHVSSAPSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNN--ELQKLWSFLFS 524
            E  ++  L+   ++L      +    + +   E   L      
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQEFDALCQEKLD 488


>gi|210134211|ref|YP_002300650.1| DNA primase [Helicobacter pylori P12]
 gi|210132179|gb|ACJ07170.1| DNA primase DnaG [Helicobacter pylori P12]
          Length = 559

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 146/595 (24%), Positives = 252/595 (42%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+ A    SF+E++++LA    + L               +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNIALEHDKGTYY----DHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I+ FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIKAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP++ LF
Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQSKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRKG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        + L+   +  ++ + +R   +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKDLLSRPMAFIEFVLRRMANSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +       ++                 +     
Sbjct: 393 EYKPLIASLLQAPLHVLGVRERASFQPFYPKTEKPNRPQK--------FAHVPNTMSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S  + +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSPLSFSEKMIFLKKARQAIIKLKQGELV 557


>gi|47679389|gb|AAT36675.1| DNA primase [Oenococcus oeni PSU-1]
          Length = 613

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 142/632 (22%), Positives = 275/632 (43%), Gaps = 33/632 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+  I+++   I I ++IG+ VD  ++        +W  CPF  E +PSF  ++    Y
Sbjct: 5   IPKSTIEEIRNSINIVDVIGKDVDLKKKGK-----YFWGICPFVSENSPSFTVDEENQRY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120
            C+SC   G+   ++S   G SF ++V  +A   G+ +     +       + +  LI L
Sbjct: 60  KCYSCGRSGNVFDYVSEKKGLSFPQAVIEVARNVGIKIDSKYTENTGGHFNENELKLIEL 119

Query: 121 IEVATDFFHHSLKNAR--DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A++ F H L N       L Y L+ER +    I  F+LG+ P           +K  
Sbjct: 120 NKQASEIFTHLLLNTDLSTNALKYLLEERHLSRETIADFQLGFLPSQWSLHDFFEEKKIP 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            E ++     +I   +  + +D F NR++FP++ S G ++ F GRTL K  SVKY+NS E
Sbjct: 180 VETQLESG--IISQYDDGSFHDVFSNRIMFPLKDSYGNIVGFSGRTLDKNNSVKYINSKE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K K LY+F  A    +           S  ++L+EGY+DV++  +AG+   ++S+
Sbjct: 238 TAVFKKSKLLYHFDVAKQAAK----------VSQKLLLLEGYLDVIAAHKAGIDYGIASM 287

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT+ QL+L+ + +P++ + +DGD  G  A ++AI+ +        ++  V +   +D
Sbjct: 288 GTSLTKDQLQLISRNTPKLTIAYDGDSAGQSATWRAIEEIKNFPH--LQLEIVTIPNQKD 345

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD +++  G  A +K    +S  + D  ++   + R+       ++    L N +N   D
Sbjct: 346 PDEYLQQNGPGALKKIFEEDSTSINDFAFEYLKKGRNLENVGNLSDYTNDLLNFLNEHPD 405

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                   + + D+                    K    +  +      +++S  +  L 
Sbjct: 406 PIANDLILKKLSDQFGLSRSVLDQSLKRNDIDVSKRQVGQSSRQNDNPPLKNSRNRNPLI 465

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + ++ E  ++++ I H  +  E  ++ A   + + + Q L+ FL   +  +        
Sbjct: 466 DQEAMIERKIIVSSIYHENVFHEI-EKKAKFTFHDPKNQ-LYYFLIKGYRSKHPGTQSIG 523

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +      E       + +   L S   +    D  +     L    R     +Q ++
Sbjct: 524 INLMKNMTASE-------KDQFNHLISDQIDFYSTDNLEAIDDYLWQLNRRIPFEKQIQQ 576

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           I++QI +     + ++   L   L ++  +  
Sbjct: 577 IKQQIQEAINLNQNDRIKELNVKLVKLMKERA 608


>gi|290890506|ref|ZP_06553581.1| hypothetical protein AWRIB429_0971 [Oenococcus oeni AWRIB429]
 gi|290479902|gb|EFD88551.1| hypothetical protein AWRIB429_0971 [Oenococcus oeni AWRIB429]
          Length = 613

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 141/632 (22%), Positives = 274/632 (43%), Gaps = 33/632 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+  I+++   I I ++IG+ VD  ++        +W  CPF  E +PSF  ++    Y
Sbjct: 5   IPKSTIEEIRNSINIVDVIGKDVDLKKKGK-----YFWGICPFVSENSPSFTVDEENQRY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120
            C+SC   G+   ++S   G SF ++V  +A   G+ +     +       + +  LI L
Sbjct: 60  KCYSCGRSGNVFDYVSEKKGLSFPQAVIEVARNVGIKIDSKYTENTGGHFNENELKLIEL 119

Query: 121 IEVATDFFHHSLKNAR--DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A++ F H L N       L Y L+ER +    I  F+LG+ P           +K  
Sbjct: 120 NKQASEIFTHLLLNTDLSTNALKYLLEERHLSRETIADFQLGFLPSQWSLHDFFEEKKIP 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            E ++     +I   +  + +D F NR++FP++ S G ++ F GRTL K  S KY+NS E
Sbjct: 180 VETQLESG--IISQYDDGSFHDVFSNRIMFPLKDSYGNIVGFSGRTLDKNNSAKYINSKE 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K K LY+F  A    +           S  ++L+EGY+DV++  +AG+   ++S+
Sbjct: 238 TAVFKKSKLLYHFDVAKQAAK----------VSQKLLLLEGYLDVIAAHKAGIDYGIASM 287

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT+ QL+L+ + +P++ + +DGD  G  A ++AI+ +        ++  V +   +D
Sbjct: 288 GTSLTKDQLQLISRNTPKLTIAYDGDSAGQSATWRAIEEIKNFPH--LQLEIVTIPNQKD 345

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD +++  G  A +K    +S  + D  ++   + R+       ++    L N +N   D
Sbjct: 346 PDEYLQQNGPGALKKIFEEDSTSINDFAFEYLKKGRNLENVGNLSDYTNDLLNFLNEHPD 405

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                   + + D+                    K    +  +      +++S  +  L 
Sbjct: 406 PIANDLILKKLSDQFGLSRSVLDQSLKRNDIDVSKRQVGQSSRQNDNPPLKNSRNRNPLI 465

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + ++ E  ++++ I H  +  E  ++ A   + + + Q L+ FL   +  +        
Sbjct: 466 DQEAMIERKIIVSSIYHENVFHEI-EKKAKFTFHDPKNQ-LYYFLIKGYRSKHPGTQSIG 523

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +      E       + +   L S   +    D  +     L    R     +Q ++
Sbjct: 524 INLMKNMTASE-------KDQFNHLISDQIDFYSTDNLEAIDDYLWQLNRRIPFEKQIQQ 576

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           I++QI +     + ++   L   L ++  +  
Sbjct: 577 IKQQIQEAINLNQNDRIKELNVKLVKLMKERA 608


>gi|58698680|ref|ZP_00373571.1| DNA primase [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58534811|gb|EAL58919.1| DNA primase [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 418

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 145/443 (32%), Positives = 223/443 (50%), Gaps = 38/443 (8%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I  +   + +S+++G+ V   +R        +   CPFH+EKTPSF  +++KG YYCF C
Sbjct: 4   IDIIKSKLLLSDIVGKKVRLIKRG-----DSFVGLCPFHNEKTPSFSVSNTKGLYYCFGC 58

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
              GD   F+S   G SF E++++LA++ GV LP      ++  K    L   +++A ++
Sbjct: 59  LASGDAFEFISQTEGLSFKEALEKLASVTGVELPKNLSITKEDNK----LFLALDLAANW 114

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
           F        ++ +  YL +R I    I+ FK+GYAP S   L+E+L   G  +  +I+ G
Sbjct: 115 FAQK-----NQGVVDYLKQRKISPKIIDKFKIGYAPSS--GLKEYLNSSGIEDRILIDIG 167

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247
           L+          D F +RLIFPI+S  G+VI FGGR LS  +  KYLNSPE+ LF K +N
Sbjct: 168 LVNK-----NFRDYFYDRLIFPIQSIAGRVIGFGGRVLSSEQQPKYLNSPESQLFKKREN 222

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           LY    AL+ ++K             I++VEGYMD ++L QAG+ N V+ LGTA++  Q+
Sbjct: 223 LYGLNFALSEIRKK----------QHILVVEGYMDTIALHQAGISNAVAPLGTAISAEQI 272

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR--C 365
           + LW+ +  I +C DGD  G  AA +  +L L  L PG  + FV L   +DP        
Sbjct: 273 KNLWRFAKEISICMDGDSAGRHAATRVAELALPILEPGYTLKFVTLPSNKDPYDICNELE 332

Query: 366 YGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           Y K      +  S  L              +N     P++ + LE      +N I +  +
Sbjct: 333 YKKEDVLTALDHSTKLHSEYLWHHIIDSNLQNYEKLAPEKYSILEHKFMEYVNTISNSSI 392

Query: 421 RYYYSQAIRDRLQQLFQKYITEH 443
           R YY     ++  +L   +  + 
Sbjct: 393 RRYYRDYFYNKASELRSSFKKQI 415


>gi|116491025|ref|YP_810569.1| DNA primase [Oenococcus oeni PSU-1]
 gi|116091750|gb|ABJ56904.1| DNA primase [Oenococcus oeni PSU-1]
          Length = 610

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 142/632 (22%), Positives = 275/632 (43%), Gaps = 33/632 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+  I+++   I I ++IG+ VD  ++        +W  CPF  E +PSF  ++    Y
Sbjct: 2   IPKSTIEEIRNSINIVDVIGKDVDLKKKGK-----YFWGICPFVSENSPSFTVDEENQRY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120
            C+SC   G+   ++S   G SF ++V  +A   G+ +     +       + +  LI L
Sbjct: 57  KCYSCGRSGNVFDYVSEKKGLSFPQAVIEVARNVGIKIDSKYTENTGGHFNENELKLIEL 116

Query: 121 IEVATDFFHHSLKNAR--DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + A++ F H L N       L Y L+ER +    I  F+LG+ P           +K  
Sbjct: 117 NKQASEIFTHLLLNTDLSTNALKYLLEERHLSRETIADFQLGFLPSQWSLHDFFEEKKIP 176

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            E ++     +I   +  + +D F NR++FP++ S G ++ F GRTL K  SVKY+NS E
Sbjct: 177 VETQLESG--IISQYDDGSFHDVFSNRIMFPLKDSYGNIVGFSGRTLDKNNSVKYINSKE 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K K LY+F  A    +           S  ++L+EGY+DV++  +AG+   ++S+
Sbjct: 235 TAVFKKSKLLYHFDVAKQAAK----------VSQKLLLLEGYLDVIAAHKAGIDYGIASM 284

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GT+LT+ QL+L+ + +P++ + +DGD  G  A ++AI+ +        ++  V +   +D
Sbjct: 285 GTSLTKDQLQLISRNTPKLTIAYDGDSAGQSATWRAIEEIKNFPH--LQLEIVTIPNQKD 342

Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           PD +++  G  A +K    +S  + D  ++   + R+       ++    L N +N   D
Sbjct: 343 PDEYLQQNGPGALKKIFEEDSTSINDFAFEYLKKGRNLENVGNLSDYTNDLLNFLNEHPD 402

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                   + + D+                    K    +  +      +++S  +  L 
Sbjct: 403 PIANDLILKKLSDQFGLSRSVLDQSLKRNDIDVSKRQVGQSSRQNDNPPLKNSRNRNPLI 462

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + ++ E  ++++ I H  +  E  ++ A   + + + Q L+ FL   +  +        
Sbjct: 463 DQEAMIERKIIVSSIYHENVFHEI-EKKAKFTFHDPKNQ-LYYFLIKGYRSKHPGTQSIG 520

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +      E       + +   L S   +    D  +     L    R     +Q ++
Sbjct: 521 INLMKNMTASE-------KDQFNHLISDQIDFYSTDNLEAIDDYLWQLNRRIPFEKQIQQ 573

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           I++QI +     + ++   L   L ++  +  
Sbjct: 574 IKQQIQEAINLNQNDRIKELNVKLVKLMKERA 605


>gi|317495392|ref|ZP_07953761.1| DNA primase [Gemella moribillum M424]
 gi|316914451|gb|EFV35928.1| DNA primase [Gemella moribillum M424]
          Length = 596

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 135/633 (21%), Positives = 261/633 (41%), Gaps = 47/633 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              +  I  +  +I I +L+ +Y+  ++R  N     Y   CPFH+EKTPSF  +  K  
Sbjct: 3   KISKQDIDYIFENIDIVSLVSEYIKLEKRGQN-----YLGLCPFHNEKTPSFTVSPDKKI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119
            +CF C   G+   F+S +   ++ +++ +L    G+ L   + K    +       +  
Sbjct: 58  AHCFGCGKGGNIFQFISLIENITYNQAIVKLGTRLGLNLESNERKEVSYDLNNELDSMYY 117

Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              +  D++++  L     +    YL +RG+    I+ F LGYAP          +    
Sbjct: 118 GHLLLADYYNYILLNTKEAEGALKYLLDRGLSIDVIKYFNLGYAPRDNNIALNFFKSNNL 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           + + ++EAGLL   DN+   YD F++R++ PI+ ++ QV+AF GRT+S+ ++  KY N+ 
Sbjct: 178 NLDLMVEAGLLGKNDNND-YYDVFKDRIMIPIKDNKNQVVAFSGRTMSQDKNVPKYYNTH 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +F K   LYNF  A +++ K           + IIL EGYMDV+   Q G++NVV+ 
Sbjct: 237 ETKIFEKRTVLYNFSDARSFIAK----------ENEIILCEGYMDVIKAYQNGIKNVVAL 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT +   +L  +  L  ++ L  D D  G       I++    +   + V  +  S  +
Sbjct: 287 MGTNIDNNKLHEILNLVNKVTLSLDNDVAG---TEAQIEIGNRIIKKTDNVYKLKFSGAK 343

Query: 358 DPDSFIRCYGKT----AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
           D D F+            +  +  +            ++ +    ++R + +  +   I+
Sbjct: 344 DLDEFLTDKNLKNINFDAQSYVTNNKEHFINFKIEYCKDVAKTNIEQRIKFKNEILTNIS 403

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           +++D+ L+Y     + +      Q    E +      KK           + L ++    
Sbjct: 404 YVEDESLKYILLTYLAEEFGIERQVLNRELNQLQTKRKKQTSQWVAPENPKLLFKALNYD 463

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K+ K        L         I  + Y +L   ++     ++L  +L   +     F 
Sbjct: 464 KKMCK--------LFKYFFTSRNIFIDNYSKLEQCQFSQEIFERLVDYLIIYYNNNLEFQ 515

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             +    + +     L   +D    D  +    T   ++D    ++      K+   + +
Sbjct: 516 IYKFIHSIDDEEVARLATYIDE--TDFLIEENPTNEIVIDYIAYFK------KKEISIEK 567

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            KE ++  I ++    + E    L+  L +   
Sbjct: 568 LKELLKVAIQEM----DVEAQKELLEQLKKYKK 596


>gi|237750826|ref|ZP_04581306.1| DNA primase [Helicobacter bilis ATCC 43879]
 gi|229373271|gb|EEO23662.1| DNA primase [Helicobacter bilis ATCC 43879]
          Length = 550

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 157/596 (26%), Positives = 257/596 (43%), Gaps = 61/596 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            +    +  L   I I ++I QY+D  +   N     + A CPFHD+KTPS   +  KG 
Sbjct: 3   RFTEASLAHLYESIDIVDVITQYIDVRKVGAN-----FMALCPFHDDKTPSMSISAIKGL 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+C +C   G+ + F+      SF ++ Q++AA+  V L      +E K+        L+
Sbjct: 58  YHCHACGASGNAIRFVMEYERLSFHDAAQKIAALFNVVLAYEKGYVETKKT------NLL 111

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
                F+H++L    D  +  YL  R I+  +I  F++GY+ +S  +LR    QK   +E
Sbjct: 112 PSLALFYHNNLFKHND--MLQYLFSRAINEDSINEFEIGYSGNSYDTLRFLDEQKLSRKE 169

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
            +    L      +   Y RF NR+IFPI SS G V+ FGGRTLS  ++V KYLNSP++ 
Sbjct: 170 AVEYGVL---TQGNDRDYARFANRIIFPIHSSTGVVVGFGGRTLSADKNVAKYLNSPQSK 226

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F+K K LY +  A   + K             II+ EGY+DV+ L QAG +N V++LGT
Sbjct: 227 VFNKSKILYGYHLAKQMIYKQ----------KSIIVCEGYLDVIMLHQAGFKNAVATLGT 276

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           AL E  L LL K +PRI +C+DGD+ G+ AA+KA   +  +   G     V+L  G DP 
Sbjct: 277 ALNEGHLYLLNKDNPRIYMCYDGDNAGINAAFKAAKFLSQNSKDG---GVVILKDGLDPA 333

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I       F+  +  ++P V+ + +   ++   N P ++       K  ++ +    L
Sbjct: 334 DMIAQNKIELFKDALNNAMPFVEFVLRHIIKDFDINNPMQKQNALKACKEYLHTLT-PFL 392

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y Q     LQ       T++              +                      
Sbjct: 393 QDEYKQKCASLLQISPIYLDTKNQKTNHIEMPKDSTNNF--------------------- 431

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E ++L  ++ H          L    +     +  +  + +   +           +
Sbjct: 432 --AEESILYNMLEHKEHFYLAINFLTKEHFQT--YRHEFQLICNQDYDNDRIYALRFKTK 487

Query: 541 ---LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              L +  F E L+     ++ A         + ++    +QQ  AL++    L R
Sbjct: 488 AKILNDEEFKEQLRIF--LLQYAQDMLPKIAISPIESSLKFQQIKALHENIAKLKR 541


>gi|262068175|ref|ZP_06027787.1| DNA primase [Fusobacterium periodonticum ATCC 33693]
 gi|291378118|gb|EFE85636.1| DNA primase [Fusobacterium periodonticum ATCC 33693]
          Length = 598

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 143/622 (22%), Positives = 259/622 (41%), Gaps = 33/622 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +  + I+ LL  + I  ++G++VD  +  +      Y   CPFH +  PSF     K 
Sbjct: 1   MYFKNEDIEKLLDSLRIEEVVGEFVDLKKSGS-----SYKGLCPFHADTNPSFSVKPEKK 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              CF C   G+ ++F S +    ++E+V+ LA    V +   + K    +  +    ++
Sbjct: 56  ICKCFVCGSGGNAINFYSKIKNIPYMEAVKELAKRYRVNIKEYNAKNTDIDNEK--FYQI 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E + +FF   +     +    YL  RG+D+  I+  +LGYAP     L + L+ K +S+
Sbjct: 114 MEDSHNFFMDKMFAQESRTALNYLANRGLDTDLIKEHRLGYAPAKWSELYDFLKAKNYSD 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPET 239
           E ++  GL I  +     YD FRNR+IFPI S   ++IAFGGR+L K +   KY+NSP+T
Sbjct: 174 EDLLNLGL-IKKNEEGKIYDTFRNRIIFPIFSISNRIIAFGGRSLEKDDAIPKYINSPDT 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGKN+Y    A N   K           ++ IL+EGYMDVLS         ++ LG
Sbjct: 233 PIFKKGKNIYGIERATNIRNK-----------NYSILMEGYMDVLSANIFDFDTSIAPLG 281

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALT  Q +L+ + S  I+LCFD D  G  A  +A          G  +  +     +DP
Sbjct: 282 TALTVEQAQLIKRYSSNILLCFDTDKAGKAATERA---SFILKSQGFNIRVLQFDGAKDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++  G+ AF +++  SL + D L++  +     +    +       K     +    
Sbjct: 339 DEYLKKNGREAFLEVVKNSLEIFDFLYELYSNEYDLSNTIAKQNFIERFKEFFTSLSTDL 398

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y + +  ++               +        +          +   ++ K  K+
Sbjct: 399 EREIYLKNLSQKIDISVDILRKTLIEENK--------KKFIAKDYNEEKKEELEKKEFKE 450

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +  E +++  L+  P   +    E  +    N  L      +  +F  +   L  E   
Sbjct: 451 ANNLELSIIEMLLKKPEYYEFFKDEEFESDMANKTLNFFEEKIKENFNFESNNLMREFEN 510

Query: 540 RLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            + E      + + ++              +  I   +  ++  + L  + +   ++   
Sbjct: 511 YMREDNGHINKSVARIILNYVVDLPQHEKEKKYIKLFKDYFRTKVKLRDKTKDDFQKIVY 570

Query: 598 IEKQIAQVTAKGEAEKTAILIS 619
             K   ++      E+   + +
Sbjct: 571 FSKFKDKIEKSKNVEEFIEIYN 592


>gi|108562437|ref|YP_626753.1| DNA primase [Helicobacter pylori HPAG1]
 gi|107836210|gb|ABF84079.1| DNA primase [Helicobacter pylori HPAG1]
          Length = 559

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 147/600 (24%), Positives = 249/600 (41%), Gaps = 53/600 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+ A    SF+E++++LA    + L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNIVLEY----DKGAYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I  FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   D    +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        + L+  S+  ++ + +R  ++   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIEILKDLLSHSMAFIEFVLRRMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +             +  +         +     
Sbjct: 393 EYKPLIAALLQAPLHVLGVRERASFQPF--------YPKTEKPNLAQKFAHVPNTMGLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNN--ELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            E  ++  L+   ++L      +    + +   E   L                 ++   
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQEFDALCQE---------KLDDPKLVAL 495

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L +         L +   +  L           +++  + +L+  ++   L + ++ I K
Sbjct: 496 LLDANLP-----LKKGGFEKELRLLILRYFERQLKEIPKSSLSFSEKMIYLKKARQAIMK 550


>gi|237740230|ref|ZP_04570711.1| DNA primase [Fusobacterium sp. 2_1_31]
 gi|229422247|gb|EEO37294.1| DNA primase [Fusobacterium sp. 2_1_31]
          Length = 603

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 140/593 (23%), Positives = 255/593 (43%), Gaps = 32/593 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +  + I+ LL  + I  ++G++VD  +  +      Y   CPFH +  PSF     K 
Sbjct: 1   MYFRNEDIEKLLDSLRIEEVVGEFVDLKKSGS-----SYKGLCPFHADTNPSFSVKPEKK 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              CF C   G+ ++F S +    ++E+V+ LA    V +   + K    +  +    ++
Sbjct: 56  ICKCFVCGSGGNAINFYSKIKNIPYMEAVKELAQKYRVNIKEYNAKNTDIDNEK--FYQI 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E + +FF   +     +    YL  RG+D+  I+  +LGYAP     L + L++K +S+
Sbjct: 114 MEDSHNFFMDKMFAQESRTALNYLSNRGLDTDLIKEHRLGYAPAKWSELYDFLKEKNYSD 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
           E ++  GL I  +     YD FRNR+IFPI S   ++IAFGGR+L K ++  KY+NSP+T
Sbjct: 174 EDLLTLGL-IKKNEEGRIYDTFRNRIIFPIYSISNRIIAFGGRSLEKDDTIPKYINSPDT 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGKN+Y    A+N   K           ++ IL+EGYMDVLS         ++ LG
Sbjct: 233 PIFKKGKNIYGIERAVNIRNK-----------NYSILMEGYMDVLSANIFDFDTSIAPLG 281

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALT  Q +L+ + S  I+LCFD D  G  A  +A          G  +  +     +DP
Sbjct: 282 TALTVEQAQLIKRYSSNILLCFDMDKAGKSATERA---SFILKSQGFNIRVLQFDDAKDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +++  G+ AF +++ +SL + D L++  +          +       K    ++    
Sbjct: 339 DEYLKKNGREAFLEVVQKSLEIFDFLYELYSSEYDLTNIIAKQNFIERFKEFFAYLTTDL 398

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y + + +++               +        +         ++    + K  KK
Sbjct: 399 EKEMYLKNLSEKIDISIDILRKTLVEENKK-------KFIVKDYIDEIEEKETEKKEFKK 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +  E +++  L+  P   +    E  +    N  L+     +  +F  +   L  E   
Sbjct: 452 ANNLELSIVEMLLKKPEYYEFFKDEKFESDIANKTLKFFEEKIKENFNFESNNLMREFEN 511

Query: 540 RLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            +        E +     ++    +     +    +  + ++    +  + R 
Sbjct: 512 YIRNDNESHSEYINSNIARIILNYVIDTEVKIEEKNFLKLFKDYFRVKVKLRD 564


>gi|222100015|ref|YP_002534583.1| DNA primase [Thermotoga neapolitana DSM 4359]
 gi|221572405|gb|ACM23217.1| DNA primase [Thermotoga neapolitana DSM 4359]
          Length = 580

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 141/627 (22%), Positives = 257/627 (40%), Gaps = 65/627 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR+ I+++   + I  ++ +YV+  R  +      Y A CPFH E  PSF+ +     Y
Sbjct: 17  IPREVIEEIKEKVDIVEVVSEYVNLTRVGS-----SYRALCPFHAETNPSFYVHPGLKIY 71

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+  + G +F E+++RLA  AGV L                L    E
Sbjct: 72  HCFGCGASGDVIKFIQEMEGITFQEALERLARRAGVDLSAYRSTGSSDYAKYVHLY---E 128

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
                +   LK +   +   YL  RG     +E +  GY P+      E  ++    E++
Sbjct: 129 RVWKRYVDELKRSH--QAKEYLLSRGFTEEEMENYGFGYVPEGSEIAVEVGKELNLKEDE 186

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +++ GL +         DRF  RLI PI++ RGQ++AFGGR L      KYLNSP+T  F
Sbjct: 187 VVKYGLALK--KGNRLVDRFEGRLIVPIKNDRGQIVAFGGRLL-GDGEPKYLNSPDTRYF 243

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K K L+ F  A    +             F ++ EGY D L+  + G+   V+ LG +L
Sbjct: 244 SKKKTLFLFDEAKKVAK----------DVGFFVVTEGYFDALAFRRDGIPTAVAVLGASL 293

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           +   +  +   S  ++LCFD D  GLRA  K+++     L     V        +DPD  
Sbjct: 294 SREAILKISAYSKNVILCFDNDRAGLRATLKSLE---DLLEYEFNVLIATPDPYKDPDEL 350

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            +  G+ + + ++ +S+     L K         +P         LK  +  ++    R 
Sbjct: 351 FQKEGRGSLKDMLKKSVSFEYFLTKAGEVFFDKGSPAGMRSYLSFLKRWVQRMR----RK 406

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + I + ++++        +    +++ +  +      ++        KG        
Sbjct: 407 GYLKNIDNLVKEVSSSTQIPENQILNFFESDRSNNVPVQEAKVQKVYDEGKG-------- 458

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
               L    +N+    +   + L     +++  ++ +  + S                  
Sbjct: 459 ----LAYLFLNYENFRERILE-LDLDVLEDHNAKEFFKRVSSI----------------- 496

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                E ++ L ++++D  ++    E       + +   L+   + R L ++ EEIEK I
Sbjct: 497 -ENINEAIETLPKEMKD-WIFRVLEEVPPPKDPEKFFCDLSERLKTRQLKKRLEEIEKLI 554

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIH 629
            Q     + E+  IL+++  ++  +I 
Sbjct: 555 KQ---SVDEEEKRILLNMKLDLLRKIK 578


>gi|167724584|ref|ZP_02407820.1| DNA primase [Burkholderia pseudomallei DM98]
          Length = 331

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 114/335 (34%), Positives = 165/335 (49%), Gaps = 34/335 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P  F++DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111
           +CF C   G  + FL    G +F E+VQ LA   G+ +P             D       
Sbjct: 57  HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSPMRGGGGSSDGHAPPAA 116

Query: 112 KIQ--TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167
                T L  +++ A D++   L+         YL  RG+       F LGYAPD     
Sbjct: 117 SKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQNL 174

Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
            +  +  R     +  ++      D +  A  YDRFR R++FPIR+ +GQVI FGGR L 
Sbjct: 175 EAAFDDYRHDSLVDAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLD 234

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
            GE  KYLNSPET LF+KG  LY  F A   ++             + ++VEGYMDV++L
Sbjct: 235 GGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVAL 283

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCF 321
            Q G  N V++LGTA T   ++ L + +  +V  F
Sbjct: 284 AQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSF 318


>gi|308183810|ref|YP_003927943.1| DNA primase [Helicobacter pylori SJM180]
 gi|308059730|gb|ADO01626.1| DNA primase [Helicobacter pylori SJM180]
          Length = 559

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 147/595 (24%), Positives = 256/595 (43%), Gaps = 45/595 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YV+  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVELRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+ A    SF+E++++LA    + L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNIVLEY----DKGVYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I+ FKLG   +        +  KG +++K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIKAFKLGLCTNRID---YGIENKGLNKDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   DN   +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKNDNDQKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A  ++ K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G +AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRKAAYKASLMLAKEQRKG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        + L+   +  ++ + +R  ++   + P E+ +    +   + +     L+ 
Sbjct: 334 IANGQIETLKDLLSRPMAFIEFVLRRMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ              + +     + +Q                 +     
Sbjct: 393 EYKPLIATLLQAPLHVLGIRGPASFQPFYPKTENLNQAQK--------FAHVPNTMSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+   ++L      +    + + + +  +  L  + ++    +   +   L 
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                 E+    L+ +   +       S  + +  +   +  +QA+   K+  L+
Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSPLSFSEKMIFLKKARQAIMKLKQGELV 557


>gi|207723753|ref|YP_002254151.1| dna primase protein (partial protein n terminus) [Ralstonia
           solanacearum MolK2]
 gi|206588957|emb|CAQ35919.1| dna primase protein (partial protein n terminus) [Ralstonia
           solanacearum MolK2]
          Length = 361

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 115/320 (35%), Positives = 168/320 (52%), Gaps = 30/320 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-----IEKKEKIQTDL 117
           +CF C   G  + FL    G S++E+++ LA  AG+ +P            +++     L
Sbjct: 57  HCFGCGAHGSAIGFLMEFSGLSYVEAIRDLAQSAGMVVPEERGGLPPGARAERQAKTVAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             ++  A D +   L++        YL  RG+       F LGYAPD   SL        
Sbjct: 117 GDVMARAGDHYRKQLRS--AANAIQYLKGRGLTGEIAGHFGLGYAPDDWQSLEAVFGAYR 174

Query: 178 FSEEKI--IEAGLLIDGDN-----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
                +  IEAGL+I+ +          YDRFR+R++FPIR+++G VI FGGR L +GE 
Sbjct: 175 DDAIAVPLIEAGLVIESEKTDADGRHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF KG  LY  F A N ++             ++++VEGYMDV++L Q G
Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFGYVLVVEGYMDVVALAQLG 283

Query: 291 VQNVVSSLGTALTEYQLRLL 310
             N V++LGTA T   ++ L
Sbjct: 284 FANAVATLGTACTPVHVQKL 303


>gi|32491218|ref|NP_871472.1| hypothetical protein WGLp469 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166425|dbj|BAC24615.1| dnaG [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 582

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 144/601 (23%), Positives = 263/601 (43%), Gaps = 46/601 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
               FI  LL +I I  LI   ++  +   N     Y+A CPFH EKTPSF  +  K F+
Sbjct: 5   ISNLFINRLLENINIIELISSIINLKKSGKN-----YFALCPFHQEKTPSFSVSYEKQFF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLIR 119
           +CF C + G+ + FL      +FIES++ L+ IAG        K     ++ K ++D+ +
Sbjct: 60  HCFGCGIHGNAIDFLMNYNNLTFIESIEELSNIAGFAFKKAQSKKIINNEELKKRSDIYK 119

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+   +  +   L +      + YL+ RG++  +IE F +G++  +      +  ++   
Sbjct: 120 LMNQVSMIYKKILNSKIFIEANDYLNNRGLNIDSIEEFSIGFSSININ--ILNYLKQSLQ 177

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              ++++  +   +      + F+NR++ P++   G VIAFGGR++      KYLNS ET
Sbjct: 178 NFYLLKSSGIFLINEKKKLSNIFKNRIMIPMKDKYGNVIAFGGRSI-NNFFPKYLNSKET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           ++F K   LY  +              R+     I+LVEGY DV+SL Q G+   V+SLG
Sbjct: 237 LIFKKSNYLYGIYE----------IKKRKIKILKILLVEGYFDVISLSQYGIYYSVASLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
                 Q++++++L+ +I+ C+DGD  G R+A+K +   L +L  G  + F+ L   EDP
Sbjct: 287 CTTPF-QIKIIFRLTNKIICCYDGDSAGRRSAWKTLINSLSYLEDGREIFFIFLPNNEDP 345

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DS IR  GK +FE LI ++ P+   L+    +  +    D + +    +   I  I  + 
Sbjct: 346 DSLIRKIGKKSFEILIEDAKPMSSFLFDTLIKKSNLYHLDGKVKFIKLILPIIKKIPGKN 405

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR Y  + I  ++  L    + +         K  +    K                   
Sbjct: 406 LRLYIRKEIGYKIGILEDYQLEKFLSLKEIKYKKNKQIKYKNNIMNT------------- 452

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL--WSFLFSDFVEQKYFLPEEI 537
                  L+  LI +P +  +   +  +I+  N  ++++  +  L             +I
Sbjct: 453 -------LIGLLIQNPKL-SKLISKKNEIKLYNIRIKEIPFFIELIKICKNNTNINTSQI 504

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +    + +   L+ L          +   +  I  +   Y+  L   +   +   + ++
Sbjct: 505 LEHYRGKKYHNHLENLAIWDHMIS-ENLIKQIFIETLSSLYKIILVSRQNILISRARIQD 563

Query: 598 I 598
           +
Sbjct: 564 L 564


>gi|154174744|ref|YP_001409225.1| DNA primase [Campylobacter curvus 525.92]
 gi|112803554|gb|EAU00898.1| DNA primase [Campylobacter curvus 525.92]
          Length = 554

 Score =  274 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 136/627 (21%), Positives = 259/627 (41%), Gaps = 76/627 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I+ L   I I ++I  Y+   +   N     +   CPFHD++ PS   + SK  +
Sbjct: 2   IEPKSIQKLKDQIDIVDIISHYIPVRKMGAN-----FKCVCPFHDDRNPSMSISQSKQIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   GD + F+      +++E+++++A I+   L     +    ++ +  L  +  
Sbjct: 57  HCFACKAGGDAIKFVMDYEKLNYVEAIEKIAQISNFSLEYTSERNFAPKENKHILENVNA 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
                F+ +           Y+  RGI+   IE F+LG+A DS  ++R    +K      
Sbjct: 117 FYRSAFYKN------DEAVRYIYSRGINDAMIERFELGWAGDSAQTIRLLENEKIEP--- 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                + I   N    Y  F +R+ FPI +  G+++ FGGRT+      KY+NSP++ +F
Sbjct: 168 SEALEVGIVKQNERGIYASFISRITFPIYNHTGRLVGFGGRTI-SNNPAKYVNSPQSAVF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K K LY +  A   +               II+ EGY+DV+ L  AG  N V+ LGTAL
Sbjct: 227 DKSKLLYGYHLAKQKI----------FEKKQIIITEGYLDVIMLHFAGFTNAVAVLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE  L LL +    +VLCFDGD  G+ AA K+  L+  + I G   + V+++ G DP   
Sbjct: 277 TEKHLPLLKRDDISVVLCFDGDVAGINAAIKSSHLLSLNEIDG---SVVIIAGGADPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +        E+L    + L +   ++  +N     P ++ +    ++    ++K+  +  
Sbjct: 334 VFAGRIKELEELFASGVELGEFYIRQIAKNYDLTRPVQKQKCLEEIETYTKNLKN-IVAS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  +   L                +    AR ++ +  SQ  +   + + +      +
Sbjct: 393 SYAPLVASLLGID----------MNSFSLGGARAQNPQPNSQNFINRPIARTQK----DI 438

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E ++L +++ +          + +  + +   ++ +  + S+  E              
Sbjct: 439 LEISILKSMLFNENFAAIVLDTIDEKYFLH--HKEGFRAILSNSSESDEI---------- 486

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                 LL++++                I D ++       L  +F       E ++  I
Sbjct: 487 ------LLREIELDESA---------MVIGDEKKLLSAIANLKIKFY------ENLQLHI 525

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIH 629
              +   + EK   + +I++ +  QI 
Sbjct: 526 RSSSDSDKIEKLQKIAAIINNLKFQIR 552


>gi|317010294|gb|ADU84041.1| DNA primase [Helicobacter pylori SouthAfrica7]
          Length = 559

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 148/600 (24%), Positives = 246/600 (41%), Gaps = 53/600 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  LL  I I  +I  YVD  +  +      Y ACCPFH+E++ SF  N  KGFY
Sbjct: 2   ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+ A    SF+E++++LA    V L       +       +   L+E
Sbjct: 57  HCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           + +  +   L N        YL +RG+   +I+ FKLG   +        +  KG + +K
Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSMESIKAFKLGLCTNRID---YGIENKGLNRDK 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +IE G+L   DN   +Y RF +R++FPI S   QV+ FGGRTL K ++ KY+NSP+  LF
Sbjct: 168 LIELGVLGKSDNDQKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   LY +  A   + K             +I+ EGY+DV+ L QAG +N +++LGTAL
Sbjct: 227 DKSSLLYGYHLAKESIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L LL K  P I+L +DGD  G  AAYKA  ++      G     +L     DP   
Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRKG---GVILFENNLDPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        +  +   +  ++ + +    +   + P E+ +    +   + +     L+ 
Sbjct: 334 IANNQIETLKDWLSRPIAFIEFVLRHMASSYVLDDPLEKDKALKEMLGFLKNF-SLLLQS 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   I   LQ        +     + +       +             V    +     
Sbjct: 393 EYKPLIAALLQVPSHVLGIKEHSSFQPFYAKMEKFNHSQK--------FVHVSNTLSLEF 444

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNN--ELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            E  ++  L+   ++L      +    + +   E   L                 ++   
Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQEFDALCQE---------KLDDPKLVAL 495

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L +         L +   +  L           +++  + AL+  ++   L + ++ I K
Sbjct: 496 LLDANLP-----LKQGGFEKELRLLILRYFERQLKEIPKSALSFSEKMIALKKARQSIIK 550


>gi|320104558|ref|YP_004180149.1| DNA primase [Isosphaera pallida ATCC 43644]
 gi|319751840|gb|ADV63600.1| DNA primase [Isosphaera pallida ATCC 43644]
          Length = 707

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 159/678 (23%), Positives = 259/678 (38%), Gaps = 75/678 (11%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69
            +   + I  +IG Y++  +  +N     Y   CPFHD+  PS   + S   + C+SC  
Sbjct: 11  RVKAAVDIVAVIGSYLNLTQVGSN-----YRGLCPFHDDHNPSLIVSPSHQTFKCWSCGA 65

Query: 70  KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV------VDPKIEKKEKIQTDLIRLIEV 123
            GD   F+       F E+++ +A  AG+ L          P        +  ++  +E 
Sbjct: 66  GGDVFEFVRRYERVDFGEALRMVADRAGITLSRSRSAGSPKPGGNAPASARPTVLAALEW 125

Query: 124 ATDFFHHSL---KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           A ++F  +L   + A   +   YL++RGI S ++  F LGYA + R  L    R  GFS 
Sbjct: 126 AANWFAETLTLGRTAGADQAAAYLEQRGITSASVARFTLGYASEERDELIRAARLAGFSL 185

Query: 181 EKIIEAGLLIDGDNSATSYD-RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-------- 231
           + +  AGL+     +      RFR RLIFPI    G+V+AFGGR L   E          
Sbjct: 186 DTLEAAGLVGRSAENPKLVRERFRGRLIFPIHDGLGRVVAFGGRLLPDQERRLKEAGRSA 245

Query: 232 -KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPETI+F K + LY                      + +++VEGY DV++  Q G
Sbjct: 246 AKYLNSPETIVFSKRRVLYGEHL----------ARAAARVRNAVVVVEGYTDVIAAHQVG 295

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           + +VV +LGTAL    L  L +L+  + L FDGD+ G  AA + ++L L H      V  
Sbjct: 296 LTHVVGTLGTALGTEHLGPLRRLADLVYLVFDGDEAGRNAADRTLELFLSH---DLDVRV 352

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT---------PDER 401
           + L  G DP       G   FE+ +  ++  + +   R  E    N           +  
Sbjct: 353 LTLEPGWDPCDLALSRGAAGFEEALGRAVDPLSLAIDRALERYGLNHAPISWSGETVEAG 412

Query: 402 AELEIHLKNCINHIKDQKLRYY------YSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
                 +   +  +     R +          +  RL+          +   R  K    
Sbjct: 413 RRAAEAVVGLLARVPANARRQHGLKLARALDVLSHRLRIPLDDLREALNQARRTAKPRRA 472

Query: 456 HRDQ------KGPSQRLMQSSLVKGKLSKKPSLRE------AALLLTLINHP-AILQEQY 502
            R+Q        P  R + +  V        +  E        L+   + HP ++L    
Sbjct: 473 LREQTAALESSRPVSRTVSTEEVGSTSGLPATGIEQFDVIDRELVTLALEHPASVLPWLS 532

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH-QRLCERGFGELLKQLDRQVRDAG 561
           + +      +  L+ +    +    +  +  PE        E G+  LL +LD   R   
Sbjct: 533 RRVPVSSLRDAPLRTILQACYDQLADGGFLEPETASCSSEREPGWSVLLDRLDEPHRAIA 592

Query: 562 LWSAT--------TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                           +    ++    A+  +     L RQ +++   +AQV      E 
Sbjct: 593 RALLDPIDAGVLPPRVSPAPWQERLAGAMLRWSERDRL-RQIDDLLAALAQVDPLASPED 651

Query: 614 TAILISILHEVHIQIHQI 631
              L   L  + +Q   +
Sbjct: 652 VQGLRLELDRLSLQRSDL 669


>gi|153952420|ref|YP_001398915.1| DNA primase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939866|gb|ABS44607.1| DNA primase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 605

 Score =  273 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 145/644 (22%), Positives = 271/644 (42%), Gaps = 63/644 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L   + I ++I  Y++  ++ +      +   CPFH +K PS H N +KGFY
Sbjct: 2   ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   GD   F+      SF ++V+++A ++   L       ++K++ + +L  ++ 
Sbjct: 57  HCFACKAGGDAFKFVMDYEKLSFADAVEKVANLSNFTLSYT----KEKQENKKELKSILP 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F  +LK    K +  YL +R ++   I  F+LG+A  S  S+R    QK   E+ 
Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    L    D +   Y  F  R+ FPI   +  ++ FGGRTL+     KY+NSP+ ILF
Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y F  A   + K             II+ EGYMD ++  +AG  N V+ LGTAL
Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE+ L L+ +   +++LCFD D+ GL+AA ++  L+  + I G      +L  G+DP   
Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSTFLLSTNKIDGK---VAILQGGKDPAEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +          ++ E + L +   +R     S  +  ++ +    ++    +++   +  
Sbjct: 336 VAKNESAKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  + + L+   +  +   +                 P ++                +
Sbjct: 395 SYTNLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 440

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  L+  L  HP I  +  Q    + + +         L    +E+K +   +I +   
Sbjct: 441 AELELIAFLKQHPEICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFES 493

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +     L         +  L         ++  +     LAL K+   L      I+K +
Sbjct: 494 KNIRKNL------NYNEFLLGICKVNLAFLNNVKIKNSTLALKKQLFTL------IDKNL 541

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
             V      E+    +         +   +++E + + F  +SG
Sbjct: 542 NLVIKNLNTEELNNFLKEYLSF---LKHEKNEEILQQSFRNLSG 582


>gi|154249129|ref|YP_001409954.1| DNA primase [Fervidobacterium nodosum Rt17-B1]
 gi|154153065|gb|ABS60297.1| DNA primase [Fervidobacterium nodosum Rt17-B1]
          Length = 560

 Score =  273 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 123/629 (19%), Positives = 253/629 (40%), Gaps = 74/629 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+D I+ +     I  +I +YV+  +  +N     Y   CPFH E +PSF+ + +K  Y
Sbjct: 2   IPKDIIEKIKEKNDIVEVISEYVNLQKVGSN-----YRGLCPFHLETSPSFYVSPTKNIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + F+  +   S+ E++++L    G+ +        ++++ ++      +
Sbjct: 57  HCFGCGASGDVIKFVQQIENISYTEAIKKLGERVGITV-----NFTEEDETRSLYYSFYK 111

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
                +   L   +   +  YL +RG +   I +++ G++P +    ++  ++   S+E 
Sbjct: 112 QLHQEYIAVL--GKSPNIVDYLKKRGFNEREISLYEFGFSPSNSQLPQKVAQRLQISKEM 169

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           + +              D F  R+I PI+   G+VIAFGGR        KYLNS +T++F
Sbjct: 170 LEK--------FGFGHSDPFSGRVIIPIKDDYGRVIAFGGRV-VGDGVPKYLNSQDTLMF 220

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K   L+    A  Y++             ++I+ EGY DVL+  +AG++N V++LGTAL
Sbjct: 221 KKTSTLFMLDSAKEYIK----------EIDYVIICEGYFDVLAFHRAGIKNAVATLGTAL 270

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T+  +  L K +  ++L FD D  G++A  + I+ +L        V     S+G+D D  
Sbjct: 271 TKSHIYKLKKYTNNVILAFDSDSAGIKATLRNIETLLSEK---FNVVVANFSKGKDADEV 327

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLR 421
              +G     + +  S      +    +     + P+       +L    N  + +    
Sbjct: 328 YFKFGSNGLLEALDNSESSEIFVVNVLSREYDLSNPNGVNTFLRNLAKWKNVFEFNPTAL 387

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             + + I   L    +                +R       S +    +    +   K  
Sbjct: 388 DNFYKRIASLLNSEKEVIK-------------SRFSTITADSGKSTIYNAQIEERKVKIP 434

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             E  L+    N+P + +        + +  +        +      + + + ++++  L
Sbjct: 435 KTEDYLVYIYFNYPDLFKT-------LDFSPD--------ILEGKAREFFLIAKDLNVSL 479

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                 +L K +   V++        E   ++V +   + +    + R + ++  EI++ 
Sbjct: 480 E-----QLSKDMGSFVKECL------EKIDIEVDEKVLENIKKDLQIRKIEKRIAEIDEL 528

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           I +  +  E          L +    I++
Sbjct: 529 IKKSVSTDERNILLNARMELVKQKNMINK 557


>gi|255318857|ref|ZP_05360083.1| DNA primase [Acinetobacter radioresistens SK82]
 gi|262378885|ref|ZP_06072042.1| DNA primase [Acinetobacter radioresistens SH164]
 gi|255304113|gb|EET83304.1| DNA primase [Acinetobacter radioresistens SK82]
 gi|262300170|gb|EEY88082.1| DNA primase [Acinetobacter radioresistens SH164]
          Length = 627

 Score =  273 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 139/681 (20%), Positives = 267/681 (39%), Gaps = 114/681 (16%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+  I  +L    I +LIGQ V   +         Y  CCPFH EK+PSFH    K 
Sbjct: 1   MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKSPSFHVYRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDLI 118
           +Y+CF C   G+ + FL  +   +F++ ++ LA+  G+ LP  +   ++    +    + 
Sbjct: 56  YYHCFGCQANGNAIRFLMDIDSRNFVDVMKDLASQTGIELPKDNQDNKRLSYKREIKKVS 115

Query: 119 RLIEVATDFFHHSLKNARDKRLH------------------------YYLDERGIDSHAI 154
           + ++         +++      +                           +    D    
Sbjct: 116 KPVQAPAAQAKEQIQSPITNTPYTPIDPFAEFQSFDPFEQFENVTDVPVQEGNLYDLLEN 175

Query: 155 EMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS---------------- 198
                        S + + +Q+G S++ +    L    ++                    
Sbjct: 176 IAQFYEQQLPKSQSAQFYFKQRGLSQDTVQFWRLGYAPEDWQHLEKAFPYDIEGLKQLGL 235

Query: 199 ---------YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLY 249
                    +D  R+R+IFPIR S+G+V+ FGGR L+     KY+NSP++ +FHK + LY
Sbjct: 236 IRSSESGRDFDLLRDRVIFPIRDSKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLLY 295

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309
             +                  +   ++VEGYMDV++L Q G+   V++LGTA     L +
Sbjct: 296 GLYEGRK------------QKAQDWLIVEGYMDVIALQQYGISGAVATLGTASNTEHLNI 343

Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
           L++ + RI + FDGD  G +AA + +++ L  L  G  + F +L    DPDS IR  G  
Sbjct: 344 LFRQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPDQHDPDSLIRREGLE 403

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQAI 428
            F++L+ ++  L D ++   T+ R  ++P+ ++++   L+   + +      RY  +Q+ 
Sbjct: 404 NFQRLLEQAPLLSDFVFAHLTQQRDVSSPEGKSQVMGELRELTDLLPKQGSFRYLLTQSF 463

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           +++L    +      +     +    +                            E   +
Sbjct: 464 KEKLGLGKRFTPKLSNDASLSFNIRTKD---------------------------EDFAI 496

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFG 547
             LI HP +    ++ L    + +  L ++ + L   F E        ++  L     + 
Sbjct: 497 AMLIRHPYLYI-HFETLRAFIHPDELLAQILAILDKIFDELPDDQELAVYYVLGACSMYC 555

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             +  + ++     L  A       ++     +  AL  + + L ++ +     I     
Sbjct: 556 HAVADILQRTNIESLIPAP------EMADKLAKEYALGLQEKYLKQKLKSPISLI----- 604

Query: 608 KGEAEKTAILISILHEVHIQI 628
                ++  L   L+E+  +I
Sbjct: 605 -----ESRNLRQQLNELTKKI 620


>gi|262373262|ref|ZP_06066541.1| DNA primase [Acinetobacter junii SH205]
 gi|262313287|gb|EEY94372.1| DNA primase [Acinetobacter junii SH205]
          Length = 627

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 154/668 (23%), Positives = 256/668 (38%), Gaps = 113/668 (16%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+  I  +L    I +LIGQ V   +         Y  CCPFH EK+PSFH    K 
Sbjct: 1   MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKSPSFHVYRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---- 116
           +Y+CF C   G+ + FL  + G +F++ ++ L+   G+ LP  +   +K    ++     
Sbjct: 56  YYHCFGCQANGNAIRFLMDIDGRNFVDVMKELSNKTGIDLPKDNQDNKKLSYKRSSQTIT 115

Query: 117 ------LIRLIEV---ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD--- 164
                           A D +        D+ +     +        E  + G   D   
Sbjct: 116 KTAPTVAKETHTTPPPAVDDYTDGHFVDMDRFIDDPFAQFDQSFAFEENVQEGNLYDLLE 175

Query: 165 -----------SRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS--------------- 198
                      +    + + RQ+G S + I    L    ++                   
Sbjct: 176 NVAQFYERQLPNSQKAQNYFRQRGLSPQTIQFWRLGYAPEDWQHLEKAFPQDIEGLKQLG 235

Query: 199 ----------YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
                     +D  R R+IFPIR  +G+V+ FGGR L+     KY+NSP++ +FHK + L
Sbjct: 236 LIRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLL 295

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           Y  +                  ++  ++VEGYMDV++L Q G+   V++LGTA     L 
Sbjct: 296 YGLYEGRKL------------KANDWLMVEGYMDVIALQQYGINGAVATLGTASNADHLT 343

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
            L+K + RI + FDGD  G +AA + +++ L  L  G  + F +L    DPDS IR  G 
Sbjct: 344 TLFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNEHDPDSLIRREGL 403

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQA 427
             F++L+ +S  L D ++   T     +TP+ ++ +   L+     +      RY  +Q+
Sbjct: 404 ENFQRLLQQSPLLSDFVFAHLTGQHDVSTPEGKSLVMGELRELTELLPKHGSFRYLLTQS 463

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            R++L                        R     S     S  ++ K        E   
Sbjct: 464 FREKLGL--------------------GKRFTPQISHDASLSFNIQTKD-------EDFA 496

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--G 545
           +  L++HP  L   ++EL  +      L K+   + +   +      E     +      
Sbjct: 497 IAILMHHP-FLYIHFEELRAVIDQTELLAKIL-AVLNIVFDDLPDDQELATYYVLGACSN 554

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-----------RLLSRQ 594
           F   +  + ++     L  A  E      ++        Y R            R L +Q
Sbjct: 555 FSHEIADIMQRTNIQSLTQA-PEIADKLAKEYALGLQEKYLRLKLKSPITLIESRNLRQQ 613

Query: 595 KEEIEKQI 602
             E+ KQI
Sbjct: 614 LNELTKQI 621


>gi|157364825|ref|YP_001471592.1| DNA primase [Thermotoga lettingae TMO]
 gi|157315429|gb|ABV34528.1| DNA primase [Thermotoga lettingae TMO]
          Length = 560

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 130/578 (22%), Positives = 236/578 (40%), Gaps = 37/578 (6%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            ++ I+ +   + I  +I QYV   +  +N     Y   CPFH EKTPSFH N +   Y+
Sbjct: 3   SKEQIERIKNSVDIVQVISQYVSLQKVGSN-----YRGLCPFHSEKTPSFHVNPTLKLYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD + F+  +   SF E++Q+L   AG+ +         K++    L R+   
Sbjct: 58  CFGCGASGDVIKFIQEIEHISFQEALQKLGRQAGIEV-KFSSSQSGKDEYVEYLFRVHTE 116

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
               + + L+      +  Y  +RG +   IE ++ GY P       E   +      K 
Sbjct: 117 ----YRNCLRKN--SEVVQYFFDRGFNDREIEEYEFGYCPGGSKIAYEVASKLSLKFSKA 170

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
           I  GL+      +   D F NR+I PI+   G+++AFGGRT       KYLNSPET  F 
Sbjct: 171 IRYGLMRK--VESGYVDTFENRIIIPIKDDFGRIVAFGGRT-VSNREPKYLNSPETPYFS 227

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K   L+ F  A   ++             F+++ EGY D ++  + GV N V++LGT+L+
Sbjct: 228 KRSVLFMFDKAKKAIK----------GVDFVVVTEGYFDAIAFHRIGVTNAVATLGTSLS 277

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           E  L  L  L+  I+LCFD DD G RA    + + L      +    +   + +DPD  +
Sbjct: 278 EIHLMKLKPLTKNIILCFDSDDAGKRATMSTLKIFL----ENDFDVAIAQFKEKDPDEVL 333

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD--QKLR 421
           R  G    +  + ++LP  + + +  ++    +T        + L+     +    +  R
Sbjct: 334 RKSGADMLKDTLKKALPFEEYIVEFYSKQFELSTTSGTERFLMQLRPWTRLMLSLKKIER 393

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Y     I     +L    ++E+       +      +       L+   + +  L ++ S
Sbjct: 394 YENLLRIISSKTRLSTAQLSEYFKSKAIQRTKFVKTNLPSDEDYLIYLYITREDLRREIS 453

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             + +L+           E    L +    +   ++   ++F    +       +I + +
Sbjct: 454 KIDRSLIR------EQTAEILDLLENNLDLSEFDEETRKYIFDVMSKIPPGDSLKIFEDI 507

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
            +    + +++   Q+                +R+  +
Sbjct: 508 KKNFIRKSIEKRLSQIDSKLAICKDERERANLLRERLR 545


>gi|148270472|ref|YP_001244932.1| DNA primase [Thermotoga petrophila RKU-1]
 gi|147736016|gb|ABQ47356.1| DNA primase [Thermotoga petrophila RKU-1]
          Length = 565

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 136/608 (22%), Positives = 238/608 (39%), Gaps = 62/608 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR+ I+++   + I  +I +YV+  R  +      Y A CPFH E  PSF+ +     Y
Sbjct: 2   IPREVIEEIKEKVDIVEVISEYVNLTRVGS-----SYRALCPFHSETNPSFYVHPGLKIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + FL  + G SF E+++RLA  AG+ L +   +   +      L    E
Sbjct: 57  HCFGCGASGDVIKFLQEMEGISFQEALERLAKRAGIDLSLYRTEGTSEYGKYIRLY---E 113

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
                +   L   + K    YL  RG     I  F  GY P       E       + E+
Sbjct: 114 ETWKRYVKEL--EKSKEAKDYLKSRGFSEEDIAKFGFGYVPKRSSISIEVAEGMNITPEE 171

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++     I         DRF  R++ PI++  G ++AFGGR L   E  KYLNSPET  F
Sbjct: 172 LV--RYGIALKKGDRFVDRFEERIVVPIKNDSGHIVAFGGRAL-GNEEPKYLNSPETRYF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K K L+ F  A    +             F ++ EGY D L+  + G+   V+ LG +L
Sbjct: 229 SKKKILFLFDEAKKVAK----------EVGFFVITEGYFDALAFRRDGIPTAVAVLGASL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           +   +  L   S  ++LCFD D  G RA  K+++     L     V     S  +DPD  
Sbjct: 279 SREAILKLSAYSKNVILCFDNDRAGFRATLKSLE---DLLEYEFNVLVATPSPYKDPDEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            +  G+ + +K++  S      L          N+P         LK  +  ++    + 
Sbjct: 336 FQKEGEGSLKKMLKNSRSFEYFLVTAGEVFFDKNSPAGVRSYLSFLKGWVQRMR----KK 391

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + + + +++         +    +++    +            + LV G  S K   
Sbjct: 392 GYLKHVENLVKEASASLQIPENQILNFFESEKSN------------TMLVHGSRSSKVYD 439

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
               L    +N+  +  +  + L     ++   ++ +  +                    
Sbjct: 440 EGRGLAYLFLNYEDLRGKILE-LDLEVLEDENAREFFKRVS------------------S 480

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +    E ++   ++++D    +  +     D  +     L+   + R + R+  EI++ I
Sbjct: 481 DEDLSEAIENFPKELKDWVFETIESIPPPKDPEKFLAD-LSEKLKIRRIERRIAEIDEMI 539

Query: 603 AQVTAKGE 610
            +V+   E
Sbjct: 540 KKVSNDEE 547


>gi|256028768|ref|ZP_05442602.1| DNA primase [Fusobacterium sp. D11]
 gi|289766673|ref|ZP_06526051.1| DNA primase [Fusobacterium sp. D11]
 gi|289718228|gb|EFD82240.1| DNA primase [Fusobacterium sp. D11]
          Length = 414

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 134/433 (30%), Positives = 217/433 (50%), Gaps = 23/433 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y ++ I  LL ++ I  ++G++++  +  +      Y   CPFH +  PSF  N  K 
Sbjct: 1   MYYKQEDIDKLLDNLKIEEVVGEFIELKKVGS-----SYKGLCPFHADTNPSFSVNPEKK 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              CF C   G+ ++F S +   S+ E+++ L+    + +           +      ++
Sbjct: 56  ICKCFVCGSGGNAINFYSKIKNISYTEAIRELSKKYKINIKEYSNTN--INENYEKFYQI 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E + +FF   + +   +    YL  RG+D++ I+  +LGYAP     L E L  KG+++
Sbjct: 114 MENSHNFFMEKIFSQDSRGALEYLSNRGLDTNLIKEHQLGYAPPKWSELYEFLNSKGYND 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239
           E ++  GL I        YD FRNR+IFPI S  G++IAFGGRTL K  S  KY+NSP+T
Sbjct: 174 EDLLALGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRTLEKDNSVPKYINSPDT 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGKN+Y    A+N   K           ++ IL+EGYMDVLS    G    ++ LG
Sbjct: 233 PIFKKGKNVYGIERAINIKNK-----------NYSILMEGYMDVLSANIFGFDTSIAPLG 281

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE Q +L+ + S  I+L FD D  G+ A  +A          G  +  +     +DP
Sbjct: 282 TALTEEQAQLIKRYSSNILLSFDMDKAGISATERA---SFILKSQGFNIRVLQFEGSKDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D F++  GK AF K++  SL + D L+   +     N    +       K+  ++I++  
Sbjct: 339 DEFLKKNGKEAFLKVVENSLEIFDFLYNLYSSEYDLNNIMAKQNFIERFKDFFSNIENDL 398

Query: 420 LRYYYSQAIRDRL 432
            +  Y + + ++L
Sbjct: 399 EKEMYLKKLSEKL 411


>gi|262038192|ref|ZP_06011586.1| DNA primase [Leptotrichia goodfellowii F0264]
 gi|261747773|gb|EEY35218.1| DNA primase [Leptotrichia goodfellowii F0264]
          Length = 602

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 144/626 (23%), Positives = 267/626 (42%), Gaps = 34/626 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y    I+ L+ ++ I  +IG+YV   +   N     Y    PF DEKTPSF  +  K  +
Sbjct: 2   YKDTEIQKLIDNLDIVQVIGEYVTLKKAGVN-----YKGFSPFKDEKTPSFVVSPVKNIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
             FS  + G+ +SF   +   SF E+V+ L+    V +  ++   +  +   T    ++ 
Sbjct: 57  KDFSTGIGGNAISFYMKINNISFYEAVEELSRKYNVSIKKLN-INKNIDNPNTKYYEIMR 115

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  FF +++ N+  +    Y++ RG     I+ F +G++ +S  SL +HL++KG++E  
Sbjct: 116 EAQTFFKNNIINS--EEALKYMENRGYSREEIQKFDIGFSFNSWDSLLKHLKEKGYNESD 173

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETIL 241
           ++E GL I  ++    +D FRNR++FPI +   ++I FGGRT+    +  KYLNSP++ +
Sbjct: 174 LLELGL-IRKNDEGNVFDYFRNRIMFPIYNDTMKLIGFGGRTVENNSDIPKYLNSPDSKI 232

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KGK LY        ++K              IL+EGY+DVL+  + G  N V+SLGTA
Sbjct: 233 FKKGKELYGLSNRGENIKKK----------GLAILMEGYLDVLTAQKNGFINSVASLGTA 282

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            TE Q +LL K +  +++ +D D+ G  A  KA +++         ++     + +DPD 
Sbjct: 283 FTEEQAQLLKKYTNNVIIAYDNDEAGKNAIIKAGNILKKQDFNVRCLSI--EGKEKDPDE 340

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           ++R +G+  F +++  S    D L+   +E+ + N    + E     K   +++ ++  R
Sbjct: 341 YLRKHGRKDFLEILKTSKNYFDFLYDYYSEDLNLNEISGKKEFIQKFKGFFSNVINKTER 400

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y   +   L         E         K     D+    ++  ++   K    +   
Sbjct: 401 NLYINKLSVELGIDKDILSEEFV------MKKKDFSDRNPIRKKRHETVATKKTKEELND 454

Query: 482 LREAALLLTLINHPA----ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           L E   L  ++ +        ++  ++L    + N    ++   L     + K       
Sbjct: 455 LLEKETLEFILRYRENGNSEYRKYCEKLESKNFTNIIYGEILEKLKKIEFDMKNLNNSIF 514

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +   E     +L    + V     +    +                 K+      + + 
Sbjct: 515 EEEETEMITTMILNANTQPVNAEKEYKDHFKGWFDRELNNALDLTD--KKDVSYKTKLQR 572

Query: 598 IEKQIAQVTAKGEAEKTAILISILHE 623
           I+  +       E EK      ++  
Sbjct: 573 IKTDLKSRYDINEIEKEYEEFKLIRR 598


>gi|269121541|ref|YP_003309718.1| DNA primase [Sebaldella termitidis ATCC 33386]
 gi|268615419|gb|ACZ09787.1| DNA primase [Sebaldella termitidis ATCC 33386]
          Length = 591

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 142/613 (23%), Positives = 274/613 (44%), Gaps = 38/613 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y  + I++ +  + I  +I +YV   +   N     Y    PF  E+TPSF  +  K  +
Sbjct: 2   YEDNEIQEFINKLDIVQVISEYVTLKKSGAN-----YKGLSPFKPERTPSFTVSPGKNIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKIQTDLIRLI 121
             FS  + GD ++F   +   +F E+V+ LA    +        K   K+        ++
Sbjct: 57  KDFSSGIGGDVITFYMKINNLTFAEAVEELANKYNIQFNSRFSGKSSNKQNSLQKFHMIL 116

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           + A +F+  ++     K+   YL++RG++ + I+ FKLGYAP++  SL E+ + K +S E
Sbjct: 117 QTALEFYSENIFKN--KKALNYLEKRGLNENDIKRFKLGYAPENWDSLLENFKNKDYSNE 174

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +IE GL I   ++   +D FR+R+IFPI +    ++ FGGR L    + KY+NS E+ +
Sbjct: 175 DLIELGL-IKRASTGNFFDVFRDRIIFPIYNKNQNIVGFGGRALDGESTAKYINSQESKV 233

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+K + +Y        ++K            F+IL+EGYMDVLS  +   +N V+SLGTA
Sbjct: 234 FNKSREVYGLVSRGEKIRKK----------GFVILMEGYMDVLSAHKNDFENAVASLGTA 283

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG-EDPD 360
            T+ Q +LL + +  IV+ +D D+ G  A ++A  +          V  +   +G +DPD
Sbjct: 284 FTDEQAKLLKRYTNNIVISYDNDEAGKNALFRASYI---LKKHEFNVKCLFFPKGIKDPD 340

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            F +   K  F +L+ ES+ + + ++   + +    T + +       K    +++++  
Sbjct: 341 EFFQSNDKKKFVELLKESVDIFEYMFSEFSYDIDIKTVEGKKIFIDRFKEFFANLQNRIE 400

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y   + + L    Q    E         K  + ++ K     +              
Sbjct: 401 IDIYLDKLSEELGISKQNLEAEILKSNTGKYKKTKTKEFKKEEISIKNKL--------NY 452

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS-DFVEQKYFLPEEIHQ 539
            L E + L  ++ +P   +E  ++          L+KL    F+   ++      EE  +
Sbjct: 453 DLLEVSTLKLILKYPEYYKEFAEKEIKSFIIIEILKKLKKIDFNTKILDNSEIDEEE--K 510

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI- 598
           +L  +   E   +++++     +    T+    ++ +   +    Y   + +  + + I 
Sbjct: 511 KLIFKFSREADLEIEKEDEYYKI--LYTDWFNRELEKEIHKKGQNYFYMKQIEHELKNIH 568

Query: 599 -EKQIAQVTAKGE 610
             ++I ++  K +
Sbjct: 569 SLQEIKELYNKFK 581


>gi|154148103|ref|YP_001407133.1| DNA primase [Campylobacter hominis ATCC BAA-381]
 gi|153804112|gb|ABS51119.1| DNA primase [Campylobacter hominis ATCC BAA-381]
          Length = 548

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 137/596 (22%), Positives = 241/596 (40%), Gaps = 50/596 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I  L+    I  +IG Y+D  +   N     + A CPFH++  PS   + +K  Y
Sbjct: 2   IAKESIDKLIQISDIVEVIGHYLDVKKSGAN-----FQAICPFHNDTHPSLMISPTKQIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   G  ++F+       F+E+VQ LA +    L         KEK      +++E
Sbjct: 57  HCFVCEAGGGAINFIMEYEKVGFVEAVQILAKMYNFELSYTSDDFADKEKKDDK--KILE 114

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           +   ++   L +   K+   YL  RG+D   I+ F LG+AP S  ++R    ++      
Sbjct: 115 MLNAYYQSLLYSN--KKAIDYLYSRGLDDKTIQNFGLGWAPGSANTIRALENEQIEP--- 169

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                +     N    Y  F +R+ FPI   R +++ FGGRTL+     KY+NSP++ +F
Sbjct: 170 GEALAVGAIKQNENGFYASFIDRITFPIFDERSRIVGFGGRTLNSENKAKYVNSPDSSVF 229

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           +K K  Y +  A     K           + +I+ EGYMDV+ L +AG+ N V+ LGTAL
Sbjct: 230 NKSKIFYAYDLARKDAVKK----------NELIICEGYMDVIMLHKAGITNAVAVLGTAL 279

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE  L +L ++   I+L FDGD  G+RAA ++ +L    L      + V++  G DP   
Sbjct: 280 TEQHLPILKRMKFHIILSFDGDTAGIRAAVRSAEL---LLKNEINTSVVIIENGADPADM 336

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +         ++  + +   + L ++   N   + P  R E    ++     + D  +  
Sbjct: 337 VFAGKIDELREIYSKGVEGGEFLIRQIASNFDLSKPILRKEALSEIQKLTFSL-DSIVAM 395

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   +   L              G +   N ++     P   LM  +  K        +
Sbjct: 396 GYENLVSAVLNL----------PIGSFSLTNKKNNLSSSPEIPLMPKAHKK-------DI 438

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L T+I       E ++ L      +   +   + +F        +    I + L 
Sbjct: 439 AELEILKTMI-----SDENFKLLGLDELKSKNFRA-HADIFEILKSGVKWQENPILRELM 492

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                +    L    +   +       N   +R         + +   + ++ +E+
Sbjct: 493 IDDSIKESNNLRSFSKAISILKINFCKN-ELLRLARSDEKDKFIKMEQIRQEIKEL 547


>gi|315452551|ref|YP_004072821.1| DNA primase [Helicobacter felis ATCC 49179]
 gi|315131603|emb|CBY82231.1| DNA primase [Helicobacter felis ATCC 49179]
          Length = 560

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 140/602 (23%), Positives = 239/602 (39%), Gaps = 58/602 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ L     I  +   Y++  R         Y A CPFH+EKTPSF  N  +  +
Sbjct: 2   ITQESLEQLKQVADIVAVTQNYLELKRAGN-----LYVAICPFHNEKTPSFTINPMRNNF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ ++F+       F+E+VQ+LA +  + L     + +  ++     + L+E
Sbjct: 57  KCFGCGKYGNAITFVMEYEQLDFVEAVQKLANMFSISLQYTTTQPKHPQE-----LDLLE 111

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
             T  +   LK+ ++ + +    +    S                 ++     +    E 
Sbjct: 112 EMTRCYEGLLKHHKEAQDYLASRDVQAKSVQEFRLGFCVGSRVLEQIQCQRLDRQALLEL 171

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETIL 241
            +              Y RF NRLIFPI +  G+++ FGGR L    +V KY+NSP++ L
Sbjct: 172 GVLGQD-----ERGRIYARFHNRLIFPIHNPNGKIVGFGGRILQPQANVAKYINSPQSAL 226

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+K K LY +F A   + KS +          +IL EGY+DV+ L QAG ++ V++LGTA
Sbjct: 227 FNKSKLLYGYFQARQDIAKSQK----------LILTEGYLDVILLHQAGFKSAVATLGTA 276

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE  L L+ + +P +V+ +DGD  G  AA K   +             VL   G DP  
Sbjct: 277 LTEQHLPLIERFNPDVVVGYDGDKAGRAAALKGAKM---LAQANRLGGVVLFENGLDPAD 333

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            I          L+ + +P  + + +   E      P  + +    + + I  +    L+
Sbjct: 334 MITQGQVEGISALLNKPIPFAEYVIRAIYERIDRLDPLFKQKALQEMLDFIQTL-SPLLQ 392

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y   I   L               +  K     + Q+  S+ +               
Sbjct: 393 ADYRDTIAHLLGIPPTLVSVARHKEAQPSKWTNAPKLQQNESRYVT-------------- 438

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             EA +L  LI+ PA+L+     L    +      K+ +      +  K+  P  +H  L
Sbjct: 439 --EALILKYLISDPALLERVRPFLEMAFF------KVLNNELLALLAGKHQDPRLLHILL 490

Query: 542 CER------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             R      GF E   +              T  + +D ++  Q  + L  + + L  +K
Sbjct: 491 DSRLPMHEHGFKEEFIKFLLVSYKEQRQQINTLYSNLDAKERMQMFIDLGIKIKQLRDRK 550

Query: 596 EE 597
            +
Sbjct: 551 GD 552


>gi|170289133|ref|YP_001739371.1| DNA primase [Thermotoga sp. RQ2]
 gi|170176636|gb|ACB09688.1| DNA primase [Thermotoga sp. RQ2]
          Length = 565

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 136/608 (22%), Positives = 235/608 (38%), Gaps = 62/608 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR+ I+++   + I  +I +YV+  R  +      Y A CPFH E  PSF+ +     Y
Sbjct: 2   IPREVIEEIKEKVDIVEVISEYVNLTRVGS-----SYRALCPFHSETNPSFYVHPGLKIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + FL  + G SF E+++RLA  AG+ L +   +   +      L    E
Sbjct: 57  HCFGCGASGDVIKFLQEMEGISFQEALERLAKRAGIDLSLYRTEGTSEYGKYICLY---E 113

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
                +   L   + K    YL  RG     I  F  GY P       E     G +   
Sbjct: 114 ETWKRYVKEL--EKSKEAKDYLKSRGFSEEDIAKFGFGYVPKRSSISIEVAE--GMNIIP 169

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                  I         DRF  R++ PI++  G ++AFGGR L   E  KYLNSPET  F
Sbjct: 170 EELVRYGIALKKGDRFVDRFEGRIVVPIKNDSGHIVAFGGRAL-GNEEPKYLNSPETRYF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K K L+ F  A    +             F ++ EGY D L+  + G+   V+ LG +L
Sbjct: 229 SKKKILFLFDEAKKVAK----------EVGFFVITEGYFDALAFRRDGIPTAVAVLGASL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           +   +  L   S  ++LCFD D  G RA  K+++     L     V     S  +DPD  
Sbjct: 279 SREAILKLSAYSKNVILCFDNDRAGFRATLKSLE---DLLEYEFNVLVATPSPYKDPDEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            +  G+ + +K++  S      L          N+P         LK  +  ++    + 
Sbjct: 336 FQKEGEGSLKKMLKNSRSFEYFLVTAGEVFFDKNSPAGVRSYLSFLKGWVQRMR----KK 391

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + + + +++         +    +++    +            + LV G  S K   
Sbjct: 392 GYLKHVENLVKEASASLQIPENQILNFFESEKSN------------TMLVHGSRSSKVYD 439

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
               L    +N+  +  +  + L     ++   ++ +  +                    
Sbjct: 440 EGRGLAYLFLNYEDLRGKILE-LDLEVLEDENAKEFFKRVS------------------S 480

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +    E ++   ++++D    +  +     D  +     L+   + R + R+  EI++ I
Sbjct: 481 DEDLSEAIENFPKELKDWVFETIESIPPPKDPEKFLAD-LSEKLKIRRIERRIAEIDEMI 539

Query: 603 AQVTAKGE 610
            +V+   E
Sbjct: 540 KKVSNDEE 547


>gi|283957024|ref|ZP_06374496.1| LOW QUALITY PROTEIN: DNA primase [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791525|gb|EFC30322.1| LOW QUALITY PROTEIN: DNA primase [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 605

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 140/623 (22%), Positives = 270/623 (43%), Gaps = 54/623 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L   + I ++I  Y++  ++ +      +   CPFH +K PS H N +KGFY
Sbjct: 2   ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   GD   F+      SF ++V+++A+++   L       ++K++ + +L  ++ 
Sbjct: 57  HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F  +LK    K +  YL +R ++   I  F+LG+A  S  S+R    QK   E+ 
Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    L    D +   Y  F  R+ FPI   +  ++ FGGRTL+     KY+NSP+ ILF
Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y F  A   + K             II+ EGYMD ++  +AG  N V+ LGTAL
Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE+ L L+ +   +++LCFD D+ GL+AA ++  L+    I G      +L  G+DP   
Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTSKIDGK---VAILQGGKDPAEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +     T    ++ E + L +   +R     S  +  ++ +    ++    +++   +  
Sbjct: 336 VAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  + + L+   +  +   +                 P ++                +
Sbjct: 395 SYTNLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 440

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  L+  L  HP I  +  Q    + + +         L    +E+K +   +I +   
Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFES 493

Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           +       + E L  + + V  A L +   + + + +++     +       + +   EE
Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEE 552

Query: 598 IEKQIAQVTAKGEAEKTAILISI 620
           +   + +  +  + EK   ++  
Sbjct: 553 LNNFLKEYLSFLKYEKNEEILQQ 575


>gi|86152612|ref|ZP_01070817.1| DNA primase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85843497|gb|EAQ60707.1| DNA primase [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 605

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 139/623 (22%), Positives = 270/623 (43%), Gaps = 54/623 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L   + I ++I  Y++  ++ +      +   CPFH +K PS H N +KGFY
Sbjct: 2   ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   GD   F+      SF ++V+++A+++   L       ++K++ + +L  ++ 
Sbjct: 57  HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F  +LK    K +  YL +R ++   I  F+LG+A  S  S+R    QK   E+ 
Sbjct: 113 SLNAYFKDNLK--HHKEILTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    L    D +   Y  F  R+ FPI   +  ++ FGGRTL+     KY+NSP+ ILF
Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNAPAKYVNSPQNILF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y F  A   + K             II+ EGYMD ++  +AG  N V+ LGTAL
Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE+ L L+ +   +++LCFD D+ GL+AA ++  L+  + I G      +L  G+DP   
Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +          ++ E + L +   +R     S  +  ++ +    ++    +++   +  
Sbjct: 336 VAKNESAKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  + + L+   +  +   +                 P ++                +
Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 440

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  L+  L  HP I  +  Q    + + +         L    +E+K +   +I +   
Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFEN 493

Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           +       + E L  + + V  A L +   + + + +++     +       + +   EE
Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEE 552

Query: 598 IEKQIAQVTAKGEAEKTAILISI 620
           +   + +  +  + EK   ++  
Sbjct: 553 LNNFLKEYLSFLKYEKNEEILQQ 575


>gi|86149285|ref|ZP_01067516.1| DNA primase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|218563227|ref|YP_002345007.1| DNA primase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|9910827|sp|Q9PM37|PRIM_CAMJE RecName: Full=DNA primase
 gi|85840067|gb|EAQ57325.1| DNA primase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|112360934|emb|CAL35735.1| DNA primase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926832|gb|ADC29184.1| DNA primase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927612|gb|EFV06943.1| DNA primase [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 605

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 139/623 (22%), Positives = 269/623 (43%), Gaps = 54/623 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L   + I ++I  Y++  ++ +      +   CPFH +K PS H N  KGFY
Sbjct: 2   ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   GD   F+      SF ++V+++A+++   L       ++K++ + +L  ++ 
Sbjct: 57  HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F  +LK    K +  YL +R ++   I  F+LG+A  S  S+R    QK   E+ 
Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    L    D +   Y  F  R+ FPI   +  ++ FGGRTL+     KY+NSP+ ILF
Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y F  A   + K             II+ EGYMD ++  +AG  N V+ LGTAL
Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE+ L L+ +   +++LCFD D+ GL+AA ++  L+  + I G      +L  G+DP   
Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +     T    ++ E + L +   +R     S  +  ++ +    ++    +++   +  
Sbjct: 336 VAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  + + L+   +  +   +                 P ++                +
Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 440

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  L+  L  HP I  +  Q    + + +         L    +E+K +   +I +   
Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFES 493

Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           +       + E L  + + V  A L +   + + + +++     +       + +    E
Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTAE 552

Query: 598 IEKQIAQVTAKGEAEKTAILISI 620
           +   + +  +  + EK   ++  
Sbjct: 553 LNNFLKEYLSFLKYEKNEEILQQ 575


>gi|57238649|ref|YP_179780.1| DNA primase [Campylobacter jejuni RM1221]
 gi|57167453|gb|AAW36232.1| DNA primase [Campylobacter jejuni RM1221]
 gi|315059088|gb|ADT73417.1| DNA primase [Campylobacter jejuni subsp. jejuni S3]
          Length = 605

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 140/623 (22%), Positives = 271/623 (43%), Gaps = 54/623 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L   + I ++I  Y++  ++ +      +   CPFH +K PS H N +KGFY
Sbjct: 2   ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   GD   F+      SF ++V+++A+++   L       ++K++ + +L  ++ 
Sbjct: 57  HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F  +LK    K +  YL +R ++   I  F+LG+A  S  S+R    QK   E+ 
Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLRNQKIPLEDA 170

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    L    D +   Y  F  R+ FPI   +  ++ FGGRTL+     KY+NSP+ ILF
Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y F  A   + K             II+ EGYMD ++  +AG  N V+ LGTAL
Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE+ L L+ +   +++LCFD D+ GL+AA ++  L+  + I G      +L  G+DP   
Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +     T    ++ E + L +   +R     S  +  ++ +    ++    +++   +  
Sbjct: 336 VAKNESTKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALEAIQKFTFNLE-PLVAN 394

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  + + L+   +  +   +                 P ++                +
Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIHTPLISQNKYNFPKEK--------------IHI 440

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  L+  L  HP I  +  Q    + + +         L    +E+K +   +I +   
Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFEN 493

Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           +       + E L  + + V  A L +   + + + +++     +       + +   EE
Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEE 552

Query: 598 IEKQIAQVTAKGEAEKTAILISI 620
           +   + +  +  + EK   ++  
Sbjct: 553 LNNFLKEYLSFLKYEKNEEILQQ 575


>gi|86152212|ref|ZP_01070423.1| DNA primase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85840701|gb|EAQ57952.1| DNA primase [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 605

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 140/623 (22%), Positives = 271/623 (43%), Gaps = 54/623 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L   + I ++I  Y++  ++ +      +   CPFH +K PS H N +KGFY
Sbjct: 2   ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   GD   F+      SF ++V+++A+++   L       ++K++ + +L  ++ 
Sbjct: 57  HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F  +LK    K +  YL +R ++   I  F+LG+A  S  S+R    QK   E+ 
Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLRNQKIPLEDA 170

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    L    D +   Y  F  R+ FPI   +  ++ FGGRTL+     KY+NSP+ ILF
Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y F  A   + K             II+ EGYMD ++  +AG  N V+ LGTAL
Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNSVAVLGTAL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE+ L L+ +   +++LCFD D+ GL+AA ++  L+  + I G      +L  G+DP   
Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +     T    ++ E + L +   +R     S  +  ++ +    ++    +++   +  
Sbjct: 336 VAKNESTKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  + + L+   +  +   +                 P ++                +
Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIHTPLISQNKYNFPKEK--------------IHI 440

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  L+  L  HP I  +  Q    + + +         L    +E+K +   +I +   
Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFEN 493

Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           +       + E L  + + V  A L +   + + + +++     +       + +   EE
Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEE 552

Query: 598 IEKQIAQVTAKGEAEKTAILISI 620
           +   + +  +  + EK   ++  
Sbjct: 553 LNNFLKEYLSFLKYEKNEEILQQ 575


>gi|88596552|ref|ZP_01099789.1| DNA primase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88191393|gb|EAQ95365.1| DNA primase [Campylobacter jejuni subsp. jejuni 84-25]
          Length = 605

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 139/623 (22%), Positives = 269/623 (43%), Gaps = 54/623 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L   + I ++I  Y++  ++ +      +   CPFH +K PS H N  KGFY
Sbjct: 2   ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   GD   F+      SF ++V+++A+++   L       ++K++ + +L  ++ 
Sbjct: 57  HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F  +LK    K +  YL +R ++   I  F+LG+A  S  S+R    QK   E+ 
Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    L    D +   Y  F  R+ FPI   +  ++ FGGRTL+     KY+NSP+ ILF
Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y F  A   + K             II+ EGYMD ++  +AG  N V+ LGTAL
Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE+ L L+ +   +++LCFD D+ GL+AA ++  L+  + I G      +L  G+DP   
Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +     T    ++ E + L +   +R     S  +  ++ +    ++    +++   +  
Sbjct: 336 VAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  + + L+   +  +   +                 P ++                +
Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 440

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  L+  L  HP I  +  Q    + + +         L    +E+K +   +I +   
Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFES 493

Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           +       + E L  + + V  A L +   + + + +++     +       + +    E
Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTAE 552

Query: 598 IEKQIAQVTAKGEAEKTAILISI 620
           +   + +  +  + EK   ++  
Sbjct: 553 LNNFLKEYLSFLKHEKNEEILQQ 575


>gi|167006175|ref|ZP_02271933.1| DNA primase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|315125042|ref|YP_004067046.1| DNA primase [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|315018764|gb|ADT66857.1| DNA primase [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 605

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 140/623 (22%), Positives = 271/623 (43%), Gaps = 54/623 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L   + I ++I  Y++  ++ +      +   CPFH +K PS H N +KGFY
Sbjct: 2   ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   GD   F+      SF ++V+++A+++   L       ++K++ + +L  ++ 
Sbjct: 57  HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F  +LK    K +  YL +R ++   I  F+LG+A  S  S+R    QK   E+ 
Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLRNQKIPLEDA 170

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    L    D +   Y  F  R+ FPI   +  ++ FGGRTL+     KY+NSP+ ILF
Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y F  A   + K             II+ EGYMD ++  +AG  N V+ LGTAL
Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE+ L L+ +   +++LCFD D+ GL+AA ++  L+  + I G      +L  G+DP   
Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +     T    ++ E + L +   +R     S  +  ++ +    ++    +++   +  
Sbjct: 336 VAKNESTKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  + + L+   +  +   +                 P ++                +
Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIHTPLISQNKYNFPKEK--------------IHI 440

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  L+  L  HP I  +  Q    + + +         L    +E+K +   +I +   
Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFEN 493

Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           +       + E L  + + V  A L +   + + + +++     +       + +   EE
Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEE 552

Query: 598 IEKQIAQVTAKGEAEKTAILISI 620
           +   + +  +  + EK   ++  
Sbjct: 553 LNNFLKEYLSFLKYEKNEEILQQ 575


>gi|315928874|gb|EFV08136.1| DNA primase [Campylobacter jejuni subsp. jejuni 305]
          Length = 588

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 132/547 (24%), Positives = 242/547 (44%), Gaps = 48/547 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L   + I ++I  Y++  ++ +      +   CPFH +K PS H N  KGFY
Sbjct: 11  ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPIKGFY 65

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   GD   F+      SF ++V+++A+++   L       ++K++ + +L  ++ 
Sbjct: 66  HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 121

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F  +LK    K +  YL +R ++   I  F+LG+A  S  S+R    QK   E+ 
Sbjct: 122 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 179

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    L    D +   Y  F  R+ FPI   +  ++ FGGRTL+     KY+NSP+ ILF
Sbjct: 180 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 237

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y F  A   + K             II+ EGYMD ++  +AG  N V+ LGTAL
Sbjct: 238 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 287

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE+ L L+ +   +++LCFD D+ GL+AA ++  L+  + I G      +L  G+DP   
Sbjct: 288 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 344

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +     T    ++ E + L +   +R     S  +  ++ +    ++    +++   +  
Sbjct: 345 VAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 403

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  + + L+   +  +   +                 P ++                +
Sbjct: 404 SYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 449

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  L+  L  HP I  +  Q    + + +         L    +E+K +   +I +   
Sbjct: 450 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFES 502

Query: 543 ERGFGEL 549
           +     L
Sbjct: 503 KNIRKNL 509


>gi|317969755|ref|ZP_07971145.1| DNA primase [Synechococcus sp. CB0205]
          Length = 650

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 157/599 (26%), Positives = 262/599 (43%), Gaps = 37/599 (6%)

Query: 53  FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
              + +K FYYCFSC   G+ + FL  L   SF + V  LA    +P+  ++   +++ +
Sbjct: 1   MTVSPAKQFYYCFSCGAGGNSIKFLMELQRQSFSDVVLELARKYQLPVETLEGPQQERLR 60

Query: 113 ----IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD-ERGIDSHAIEMFKLGYAPDSRY 167
                +  L + + +A  +F   L+         YL   RG+D   +E F LGYAP+   
Sbjct: 61  QQLSRRDQLHKALSLAAGWFRSQLRAPEGAAALDYLKTSRGLDEATLEAFGLGYAPERWD 120

Query: 168 SLREHLRQ-KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
            L  HL+Q +G S E +  AGL++        YDRFR+R++ PI   +G++I FGGR+L 
Sbjct: 121 GLLSHLQQVEGLSPELLEAAGLVVPRRGGDGFYDRFRHRVMVPIADRQGRIIGFGGRSLD 180

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
            GE  KYLNSPET +F KGK+L+    A+N ++K+ R           ++VEGY DV++L
Sbjct: 181 GGEP-KYLNSPETEVFEKGKHLFGLDKAVNAIRKADRA----------VVVEGYFDVIAL 229

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344
             AG+ N V++LGTAL+  Q+  L +     R++L FD D  G+RAA +AI  V    + 
Sbjct: 230 HAAGITNAVAALGTALSNQQITQLCRCCDGKRLILNFDADGAGVRAAQRAIGEVEQLALQ 289

Query: 345 G-NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
           G   +  + L  G+DPD F++ +G   +  L+ +S   +D    +       +  D+  +
Sbjct: 290 GQLELRVLHLPSGKDPDEFLKQHGAGDYRSLLDQSPLWLDWQIDQVLHGCDLSKADQFQK 349

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
               L   +  +    +R  Y Q + +RL     +   +     R   K  R   +    
Sbjct: 350 AVTDLVALLGKLPASAVRSRYLQQVAERLSGGQARLALQLEDDLRQQVKGQRWHGRSRRW 409

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWS 520
           ++  ++ L            EA +L   ++ PA       EL       +     ++LW+
Sbjct: 410 EQPGEAGLR--------ERAEAEVLRLYLHCPAYRGPIRAELRRRELDDFAIAHHRQLWA 461

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            + S   +       E   R  E G       L R + D  L +   ++    +      
Sbjct: 462 VISSLEEDNLGVGRLEAINRGSEAGAELADLDLPRLLSDQLLLADDPDSG---LPSELLG 518

Query: 581 ALALYKRFRLLSRQ-KEEIEKQIAQVTAKGEAEKTAILISILHEV--HIQIHQIESQEA 636
            L        + R        Q+   TA  E +++      L +     ++  +E   A
Sbjct: 519 RLTPLLEPSDVQRLSLSNPPLQLRGATAALERQRSMKRARHLLDAWSSQRLETLERCIA 577


>gi|121612785|ref|YP_001001281.1| DNA primase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|121504201|gb|EAQ72538.2| DNA primase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 614

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 140/623 (22%), Positives = 271/623 (43%), Gaps = 54/623 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L   + I ++I  Y++  ++ +      +   CPFH +K PS H N +KGFY
Sbjct: 11  ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 65

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   GD   F+      SF ++V+++A+++   L       ++K++ + +L  ++ 
Sbjct: 66  HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 121

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F  +LK    K +  YL +R ++   I  F+LG+A  S  S+R    QK   E+ 
Sbjct: 122 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLRNQKIPLEDA 179

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    L    D +   Y  F  R+ FPI   +  ++ FGGRTL+     KY+NSP+ ILF
Sbjct: 180 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 237

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y F  A   + K             II+ EGYMD ++  +AG  N V+ LGTAL
Sbjct: 238 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 287

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE+ L L+ +   +++LCFD D+ GL+AA ++  L+  + I G      +L  G+DP   
Sbjct: 288 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 344

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +     T    ++ E + L +   +R     S  +  ++ +    ++    +++   +  
Sbjct: 345 VAKNESTKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 403

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  + + L+   +  +   +                 P ++                +
Sbjct: 404 SYTSLVSNLLKVDEKFIVLSQNSKKTIHTPLISQNKYNFPKEK--------------IHI 449

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  L+  L  HP I  +  Q    + + +         L    +E+K +   +I +   
Sbjct: 450 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFEN 502

Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           +       + E L  + + V  A L +   + + + +++     +       + +   EE
Sbjct: 503 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEE 561

Query: 598 IEKQIAQVTAKGEAEKTAILISI 620
           +   + +  +  + EK   ++  
Sbjct: 562 LNNFLKEYLSFLKYEKNEEILQQ 584


>gi|262369407|ref|ZP_06062735.1| DNA primase [Acinetobacter johnsonii SH046]
 gi|262315475|gb|EEY96514.1| DNA primase [Acinetobacter johnsonii SH046]
          Length = 631

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 148/686 (21%), Positives = 264/686 (38%), Gaps = 119/686 (17%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+  I  +L    I +LIGQ V   +         Y  CCPFH EK+PSFH    K 
Sbjct: 1   MAIPQHTIDQILDRTDIVDLIGQRVKLKKSGR-----TYSGCCPFHQEKSPSFHVYRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115
           +++CF C   G+ + FL  +   SFI+ ++ L++  G+ LP  +   +K    +      
Sbjct: 56  YFHCFGCQANGNAIRFLMDIDSRSFIDVMKDLSSQTGIELPKDNRDSKKLVYKREAKPVQ 115

Query: 116 -------------------DLIRLIEVATDF----FHH---SLKNARDKRLHYYLDERGI 149
                              +     +   +F    +                   +    
Sbjct: 116 KPQVDVAEAKKTEPAPAQHEFQIEHDPFAEFQSMDYQEGYADFDTFEGFNTAPVQEGNLY 175

Query: 150 DSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS----------- 198
           D                 + +++ +Q+G S + I    L    ++               
Sbjct: 176 DLLENIAQYYELQLPHSRAAQQYFKQRGLSRDTIAYWRLGYAPEDWQHLEKAFPQDIEGL 235

Query: 199 --------------YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
                         +D  R+R+IFPIR ++G+V+ FGGR L+     KY+NSP++ +FHK
Sbjct: 236 KLLGLIRTSDNGRDFDLLRDRVIFPIRDAKGRVVGFGGRALNDEIKPKYINSPDSEVFHK 295

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            + LY  +                  +   ++VEGYMDV++L Q G+   V++LGTA   
Sbjct: 296 NQLLYGLYEGRK------------QKAQDWLMVEGYMDVIALQQYGIAGAVATLGTASNT 343

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             L +L+K + RI + FDGD  G +AA + +++ L  L  G  + F +L    DPDS IR
Sbjct: 344 EHLNILFKQNNRITIAFDGDVAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIR 403

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYY 423
             G   F KL+ ++  L D ++   T+N   ++P+ ++++   L+   + +      RY 
Sbjct: 404 REGIENFNKLLQQAPLLSDFVFAHLTQNHDISSPEGKSQVMSELRQLTDLLPKTGSFRYL 463

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +Q+ +++L   F +  T           N R +D                         
Sbjct: 464 LNQSFKEKLG--FGRRWTPQVSNDASLSFNIRTKD------------------------- 496

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E   L  LI+HP  L   ++ L     ++  L  +   L S F +         +  L  
Sbjct: 497 EDFALAVLIHHP-FLYIHFETLRAYLPEDELLGHVLQVLDSIFDDLPDDQELATYYVLGA 555

Query: 544 -RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
              +   +  + ++  +  + + T E              AL    + L ++ +     +
Sbjct: 556 CSRYSNAIADIMQR-TNIEVLTKTPEMA-----DKLASEYALSLEEKYLRQKLKAPLSLL 609

Query: 603 AQVTAKGEAEKTAILISILHEVHIQI 628
                     ++  L   L+E+  +I
Sbjct: 610 ----------ESRNLRQKLNELTKKI 625


>gi|167747160|ref|ZP_02419287.1| hypothetical protein ANACAC_01874 [Anaerostipes caccae DSM 14662]
 gi|167654120|gb|EDR98249.1| hypothetical protein ANACAC_01874 [Anaerostipes caccae DSM 14662]
          Length = 530

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 139/548 (25%), Positives = 247/548 (45%), Gaps = 28/548 (5%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118
            YYCF C   G+  +F+      +F E+V+ LA  AG+ LP      + +++   +  L 
Sbjct: 1   MYYCFGCGAGGNVFTFIMEYENFTFPEAVRYLAERAGMELPEQELSAEAKQQADAKVQLK 60

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            + ++A ++F+  L + R ++   YL +RGI    I+ F LGYA   +  L   L+ KGF
Sbjct: 61  EMNKMAANYFYILLHSKRGEKGLAYLTKRGITGETIKKFGLGYADIYQDDLYRFLKSKGF 120

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S+E++ ++ L+   +    S D+F NR++FPI+    +VI FGGR +    S KYLNS E
Sbjct: 121 SDEELKDSALVTIDEARGGS-DKFWNRVMFPIQDVNSRVIGFGGRVM-GDGSPKYLNSRE 178

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T LF K +NLY    A +                FIIL EGYMDV+S+ QAG  N V++L
Sbjct: 179 TKLFDKSRNLYGLNFARSS------------REKFIILCEGYMDVISMHQAGFTNAVAAL 226

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA TE    LL + +  ++L FD D+ G RA  +AI +       G  V  + L+  +D
Sbjct: 227 GTAFTEGHGMLLKRYTNEVILSFDSDEAGQRAILRAIPI---LKGAGLTVRVLDLTPYKD 283

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD FI+  G    +  I ++               + + P+E+ + +      ++ I++ 
Sbjct: 284 PDEFIKELGSEELKNRIQKARSSFMFQISVAAGKYNQDDPEEKTKFQHEAAKLLSGIREP 343

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y +A+        ++       YG           Q+ P ++  + + VK +  +
Sbjct: 344 LERNNYCEAVSREYFMGVKELKDLVEYYG------TSGYVQEKPKEQERRPAEVKKEEKR 397

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +    +  LL  L+N P + Q+    +    +           LF ++      +P +I 
Sbjct: 398 QEP--QKLLLTWLVNEPVLFQKLAGIIGPDDFIEPIYHGAAMLLFEEYERDGKVMPAKIL 455

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK-EE 597
            +  +    + + +L              +  + D+ +  ++    +K        K +E
Sbjct: 456 NQYTDMEDQKKIAELFNTTLKLKPLPEDNDKALTDIVRKVKEDSIEHKMNESNDIMKWQE 515

Query: 598 IEKQIAQV 605
           + ++  ++
Sbjct: 516 LIQEKGRL 523


>gi|294782674|ref|ZP_06748000.1| DNA primase [Fusobacterium sp. 1_1_41FAA]
 gi|294481315|gb|EFG29090.1| DNA primase [Fusobacterium sp. 1_1_41FAA]
          Length = 601

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 146/598 (24%), Positives = 256/598 (42%), Gaps = 38/598 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +  + I+ LL  + I  ++G++VD  +  +      Y   CPFH +  PSF     K 
Sbjct: 1   MYFRNEDIEKLLDSLKIEEVVGEFVDLKKSGS-----SYKGLCPFHADTNPSFSVKPEKR 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              CF C   G+ ++F S +    ++E+V+ LA    V +   + K    +  +    ++
Sbjct: 56  ICKCFVCGSGGNAINFYSKIKNIPYMEAVKELAQKYRVNIKEHNAKNIDIDNEK--FYQI 113

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E + +FF   +     +    YL  RG+D+  I+  +LGYAP     L E L++K +S+
Sbjct: 114 MEDSHNFFIDKIFAQESRTALNYLANRGLDTDLIKEHRLGYAPAKWSELYEFLKEKNYSD 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPET 239
           E ++  GL I  +     YD FRNR+IFPI S   ++IAFGGRTL K   + KY+NSP+T
Sbjct: 174 EDLLTLGL-IKKNEEGRIYDTFRNRIIFPIYSISNRIIAFGGRTLEKDNSTPKYINSPDT 232

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F KGKN+Y    A+N   K           ++ IL+EGYMDVLS         V+ LG
Sbjct: 233 PIFKKGKNIYGIERAVNIRNK-----------NYSILMEGYMDVLSANIFDFDTSVAPLG 281

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALT  Q +L+ + S  I+LCFD D  G  A  +A          G  +  +     +DP
Sbjct: 282 TALTVEQAQLIKRYSSNILLCFDTDKAGKTATERA---SFILKSQGFNIRVLDFENAKDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D ++R  GK AF +++  SL + + L++  +          +       K     +    
Sbjct: 339 DEYLRKNGKEAFLEVVKNSLEIFEFLYELYSSEYDLTNIIAKQNFIDRFKEFFTCLTTDL 398

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y + + ++++              +       + ++K       +           
Sbjct: 399 EKEVYLKNLSEKIEISADILRKTLIEKNKKKFVINDYTEKKEELLEKKEFKKANN----- 453

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E +++  L   P   +    E  +    N  L+     +  +F  +   L  E  +
Sbjct: 454 ---LELSIVEMLFKKPEYYEFFKNEKLESDIGNKTLKFFEEKIKENFKIESNTLMREFEE 510

Query: 540 RL--CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +    +  + + R + +  +       +    ++ Y +    Y R ++  R K
Sbjct: 511 YIKNDDNCSKDTKEDIARIILNYAV-----NLDEEKEQKKYIELFKSYFRIKIKLRDK 563


>gi|157415858|ref|YP_001483114.1| DNA primase [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386822|gb|ABV53137.1| DNA primase [Campylobacter jejuni subsp. jejuni 81116]
 gi|315931684|gb|EFV10645.1| DNA primase [Campylobacter jejuni subsp. jejuni 327]
          Length = 605

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 139/623 (22%), Positives = 271/623 (43%), Gaps = 54/623 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L   + I ++I  Y++  ++ +      +   CPFH +K PS H N +KGFY
Sbjct: 2   ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   GD   F+      SF ++V+++A+++   L       ++K++ + +L  ++ 
Sbjct: 57  HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F  +LK    K +  YL +R ++   I  F+LG+A  S  S+R    QK   E+ 
Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    L    D +   Y  F  R+ FPI   +  ++ FGGRTL+     KY+NSP+ ILF
Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y F  A   + +             II+ EGYMD ++  +AG  N V+ LGTAL
Sbjct: 229 DKSRIFYAFNIAKENIAQK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE+ L L+ +   +++LCFD D+ GL+AA ++  L+  + I G      +L  G+DP   
Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +     T    ++ E + L +   +R     S  +  ++ +    ++    +++   +  
Sbjct: 336 VAKNESTKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  + + L+   +  +   +                 P ++                +
Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 440

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  L+  L  HP I  +  Q    + + +         L    +E+K +   +I +   
Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFES 493

Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           +       + E L  + + V  A L +   + + + +++     +       + +   EE
Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEE 552

Query: 598 IEKQIAQVTAKGEAEKTAILISI 620
           +   + +  +  + EK   ++  
Sbjct: 553 LNNFLKEYLSFLKYEKNEEILQQ 575


>gi|153803749|ref|ZP_01958335.1| DNA primase [Vibrio cholerae MZO-3]
 gi|124120716|gb|EAY39459.1| DNA primase [Vibrio cholerae MZO-3]
          Length = 271

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/269 (36%), Positives = 142/269 (52%), Gaps = 16/269 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR FI DLL  + I ++I   V   ++  N     Y ACCPFH+EKTPSF  +  K FY
Sbjct: 5   IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113
           +CF C   G+ + F+       F E+++ LA+  G+ +      P           K + 
Sbjct: 60  HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 119

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +  L  L+     F+   LK   +K    YL  RG+    ++ F +GY  D    +R + 
Sbjct: 120 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNF 179

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
            Q+  SE+ ++ AG+LI+ DN    YDRFR R++FPIR  RG+VI FGGR +++  + KY
Sbjct: 180 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 237

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSI 262
           LNSPET +FHKGK LY  +  L   ++  
Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPP 266


>gi|284044560|ref|YP_003394900.1| DNA primase [Conexibacter woesei DSM 14684]
 gi|283948781|gb|ADB51525.1| DNA primase [Conexibacter woesei DSM 14684]
          Length = 641

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 124/452 (27%), Positives = 197/452 (43%), Gaps = 21/452 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            Y  D    ++  + + +L+    +  R   N     Y+  CPFH+E+T SFH    +  
Sbjct: 3   RYTADSKDRVVDAVDMISLVSGKTELRRAGVN----SYFGRCPFHEERTGSFHVRPEEKH 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEKIQTDLIR 119
           Y+CF C   GD   F+    G  F  +++ LA   GV   +   DP  + + + +  L  
Sbjct: 59  YHCFGCQESGDPFDFVMNTEGLDFRGALETLAERFGVTLEVEDEDPLAKARRERRDRLHD 118

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L++ A  ++   L  +        YL  RG+    +  +++GYAP +   +    RQ GF
Sbjct: 119 LLDRAAAYYARYLWESAEAAGARDYLARRGLTEETLRTYRVGYAPSAWDKMLLGSRQAGF 178

Query: 179 SEEKIIEAGL-LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           SEE+++  GL         + YDRFR R++FP+ ++RG+V+ FG R +   +  KYLN+ 
Sbjct: 179 SEEELLATGLAQRSKQRRGSLYDRFRERIMFPLANARGKVVGFGARAMRDNQPPKYLNTS 238

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E  +FHKG  L+                     +  I+L EGY DVL+L QAGVQN V  
Sbjct: 239 EGEVFHKGSQLFGID----------IARRAAARAGSIVLAEGYTDVLALHQAGVQNAVGV 288

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT+LTE Q R L + +  ++L  D D  G  A  +A  +          +  V L  G+
Sbjct: 289 MGTSLTEEQARELERTARTLLLALDADRAGQEAMVRASRIAAGRR---LELRVVGLPEGK 345

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DP   I+  G  A  + +  S+P V     +          + +      L+  +  +  
Sbjct: 346 DPADLIQEEGPDAVRERVARSVPFVAFHVDKILTGSDLGDAEAKDRAIAELRPVLGPVPP 405

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
             LR    + I  RL    Q   T        
Sbjct: 406 SVLREELIRRIAGRLDLSDQLAATLLEQSAEE 437


>gi|241889482|ref|ZP_04776781.1| DNA primase [Gemella haemolysans ATCC 10379]
 gi|241863789|gb|EER68172.1| DNA primase [Gemella haemolysans ATCC 10379]
          Length = 596

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 137/615 (22%), Positives = 253/615 (41%), Gaps = 43/615 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              +  I  +  +I I +L+ +YV  ++R  N     Y   CPFH+EKTPSF  +  K  
Sbjct: 3   KISKQDIDYIFDNIDIVSLVSEYVKLEKRGQN-----YLGLCPFHNEKTPSFTVSSEKKI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119
            +CF C   G+   F+S +   ++ +++ +L    G+ +   + K E  +       +  
Sbjct: 58  AHCFGCGKGGNIFQFVSLIENITYNQAIVKLGTRLGLDIESNNNKEESYDLNNELDIMYY 117

Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              +  D++++  L     +    YL +RG+    I+ F LGYAP               
Sbjct: 118 GHRLLADYYNYILLNTKEAEDALKYLLDRGLSEDVIKHFNLGYAPRDNNIALNFFNSNKI 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237
           + + ++EAGLL   DN    YD F++R++FPI++++ QV+AF GRT+S  ++  KY N+ 
Sbjct: 178 NLDLMVEAGLLGKNDNGD-YYDVFKDRVMFPIKNNQNQVVAFSGRTMSSDKNVPKYYNTH 236

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +F K   LYNF  A  ++ K           + +IL EGYMDV+   Q G++N V+ 
Sbjct: 237 ETKIFEKRTVLYNFSDARLFIAK----------ENEVILCEGYMDVIKAHQNGMKNAVAL 286

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +GT +   +L+ +  L  +I L  D D+ G   +   I++    +   + V  +  S  +
Sbjct: 287 MGTNIDNNKLKEVLSLVKKITLSLDNDEAG---SKAQIEIGNRIIQTTDNVYKLKFSGAK 343

Query: 358 DPDSFIRCYGKT----AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
           D D F+            E  +  +            +N S +  ++R + +  +   I 
Sbjct: 344 DLDEFLTEKNTKNPDFDVENYLRNNKEHFINYKIEFCKNDSKSNIEQRIKYKNEILVNIA 403

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           +++D+ L+Y     + +      Q  + E        KK A         + L +++   
Sbjct: 404 YVEDESLKYILLTNLAEEFGIERQVLLKELGKVNVKRKKAAVEWVVPTNPELLFRTTNYD 463

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K+ K        L        ++  E+Y +L   ++       L  +L   +     F 
Sbjct: 464 KKMCK--------LFKYFFVDRSLFVEKYNDLEKCQFPQEAFVNLMDYLVIYYNNNLEFH 515

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             +    + +     L   +D             E    DV   Y   +    +   L  
Sbjct: 516 IHKFIHSIDDDEVVRLATYIDETD------FLIEENPTADVVGDY--IIYFSNKEMTLKE 567

Query: 594 QKEEIEKQIAQVTAK 608
            K+ +   I ++  +
Sbjct: 568 IKDRLRVAIQEMDTE 582


>gi|332284640|ref|YP_004416551.1| DNA primase [Pusillimonas sp. T7-7]
 gi|330428593|gb|AEC19927.1| DNA primase [Pusillimonas sp. T7-7]
          Length = 622

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 160/643 (24%), Positives = 273/643 (42%), Gaps = 80/643 (12%)

Query: 28  DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIE 87
            +   N +       CPFH+EK+PSF  + +K FY+CF C   G  + FL    G SF E
Sbjct: 2   RKGGANLL-----GLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGSAVGFLMEHTGASFPE 56

Query: 88  SVQRLAAIAGVPLPVV--DPKIEKKEKIQT----DLIRLIEVATDFFHHSLKNARDKRLH 141
           +V+ LAA  G+ +P     P+ +  ++ +        ++++ A   +   LK ++     
Sbjct: 57  AVRSLAATVGMTVPEEPRSPRQQVADRRRKEEVNRHQQILDTAQAHYLRELKGSQSA--I 114

Query: 142 YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDR 201
            YL +RG+       F LG++   R  L        + +  ++E+GL+I+ D+    YDR
Sbjct: 115 RYLKQRGLSGEIAARFGLGWSGTDRRGLAAVF--PQYEDALLVESGLVIEADDGRR-YDR 171

Query: 202 FRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKS 261
           FR R++FPIR++RG +I FGGR + KGE  KYLNSPET LF KG  LY  +     ++  
Sbjct: 172 FRERIMFPIRNARGNLIGFGGRIIGKGEP-KYLNSPETGLFSKGHELYGMWEGRAGIR-- 228

Query: 262 IRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCF 321
                   S  ++++VEGYMDV+ L Q G+ N V++LGTA T + ++ L + S +IV  F
Sbjct: 229 --------SEGYVLVVEGYMDVVGLAQHGLANAVATLGTATTPFHIQKLLRSSNKIVFSF 280

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           DGD  G RAA++A++  L  +     + F+ L    DPDS+I+ YG  AF+    E++PL
Sbjct: 281 DGDKAGRRAAWRALNTCLPLVRDDVSMRFLFLPAEHDPDSYIKEYGAEAFKATAAEAIPL 340

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ-KLRYYYSQAIRDRLQQLFQKYI 440
              +        + N  + RA      K  +  + +   LR    +    +L QL  + +
Sbjct: 341 SRFMLDELASRHALNEAEGRAACAHEAKPLLALLPEGTTLRIQIEREFA-KLVQLTPEEL 399

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV---------------------------- 472
            E           A       P++R+ + S                              
Sbjct: 400 AELMATVPAPAAAATPEPGMPPTERVTRPSQAGGHDEPPGFMDVPVFDDEDYKAYSPGVT 459

Query: 473 ------KGKLSKKPSLREAALLLTL-------INHPAILQEQYQELADIRYDNNELQKLW 519
                 +G  S+  S +  ++           + HP ++     +  +I  ++     L 
Sbjct: 460 VDNSAVRGAPSRGRSSKARSVTPMAKRLLRLLLAHPELVSGLGDQQLEI-LEHGPHLILV 518

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
             L +            + Q          +L  L  ++ D              +R+  
Sbjct: 519 RELIALANMTGARHAGALLQAAEPGSDLETVLATLTPELLDQEDLPHPQIEWNDALRRIE 578

Query: 579 QQALALY--------KRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            +A+            R     ++ +E+ ++IA V +    + 
Sbjct: 579 LEAIKAEQSALVEAGLRDDASRKRYQELTRRIALVNSATSHQM 621


>gi|220915873|ref|YP_002491177.1| DNA primase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953727|gb|ACL64111.1| DNA primase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 617

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 153/627 (24%), Positives = 245/627 (39%), Gaps = 48/627 (7%)

Query: 18  SNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL 77
             +IG++++  R         +   C FH E+TPSFH       + C+ C   GD  +FL
Sbjct: 2   VAVIGRHMELKRSGR-----TWKGNCIFHGERTPSFHVYPEDKHFKCYGCGAYGDVFTFL 56

Query: 78  SALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDLIRLIEVATDFFHHSLK 133
             L G  F E V+ LA   GV +P        +   K K + +++   + A  ++   L 
Sbjct: 57  QRLEGKEFPEVVRALAQEVGVEIPEAAEEDSAEARAKRKERNEVLAASDAAARYWAARLA 116

Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193
           +        YL+ RG+   ++  F+LG A D+   L   L++KG     +  AGL+I+ +
Sbjct: 117 SRFGAPARAYLERRGVTEESVRRFRLGVAADAWNDLAPRLKEKGIGVAALQRAGLVIERE 176

Query: 194 NS-ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFF 252
                +YDRFRNRL+FPI    GQVI FGGR L + +  KY+N+PET L+ K K LY   
Sbjct: 177 RDGGGTYDRFRNRLMFPIAGMDGQVIGFGGRALGEEQGAKYINTPETPLYKKSKVLYGLD 236

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
            A   ++K          +   +LVEGY DV+ L Q GV   V+  GTALT   + LL +
Sbjct: 237 LARETIRK----------TRSAVLVEGYFDVIGLHQVGVTGAVAVCGTALTPEHVELLSR 286

Query: 313 L-SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371
                + + FDGD  GL A  KA   +    + G        +   DPD + R  G+   
Sbjct: 287 CDCREVAVLFDGDVAGLAAPAKAAQALFPAGMAGKVAVLPSAAGKSDPDEYARANGRAGV 346

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTP-----DERAELEIHLKNCINHIKDQKLRYYYSQ 426
           + L+  ++PL + L  R  E    + P     + +      L+  +  + +   R  +  
Sbjct: 347 DALLAAAVPLSEFLVDRAVERACGDRPREAALERKLAAVRELEPFVRMMPEGLARSVFED 406

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            I  RL        TE S   R     A              S         +      A
Sbjct: 407 MIARRLDLDPGALRTELSAERRRPGVPAPAPTGHPERPSGAPSRPAPSAGPARGGPSAHA 466

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLW----------SFLFSDFVEQKYFLPEE 536
            +  L+  P    +    LA         ++            + L  D V     L + 
Sbjct: 467 RVRVLL--PGPAADALALLAAFPDLGPVAEEERLPQLLPPGPLADLARDLVRGPVALDDA 524

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +  RL         ++    V          E    ++R+   +A         L ++  
Sbjct: 525 L-ARLSSGADEATARRFRTLVGPGR---PRPEEAERELRKAAVKAT-----LERLDQEYG 575

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHE 623
           E  +++ +  +   A+   +    L  
Sbjct: 576 EALRRVTKAGSAA-ADGLDVTAQRLIN 601


>gi|332287750|ref|YP_004422651.1| DNA primase [Chlamydophila psittaci 6BC]
 gi|313848321|emb|CBY17324.1| putative DNA primase [Chlamydophila psittaci RD1]
 gi|325506844|gb|ADZ18482.1| DNA primase [Chlamydophila psittaci 6BC]
 gi|328915005|gb|AEB55838.1| DNA primase [Chlamydophila psittaci 6BC]
          Length = 591

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 147/609 (24%), Positives = 254/609 (41%), Gaps = 55/609 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y  + + +L   I I  ++ +++   R       G Y ACCPFH EKTPSF  N +  +Y
Sbjct: 2   YTEESLDNLRHSIDIIEVLSEHLHLKRSG-----GTYKACCPFHVEKTPSFIVNPTGAYY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120
           +CF C   GD +SFL   LG SF E+V  L+    V   + + D +       + +L ++
Sbjct: 57  HCFGCGAHGDAISFLMNHLGYSFSEAVLTLSKKFHVDLVIKIKDTQSPFATGAKDELRQI 116

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A   F   L   A  +    YL  RG     I  F LGYAP+        +R+KG S
Sbjct: 117 NAEAEKLFRFCLYQLAEGREALQYLYRRGFSPDTIGRFHLGYAPEQ-TLFVHAMREKGIS 175

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPE 238
           E+++ +AG + +          F  R+IFPI  S G  + F  R  L      KY+N+PE
Sbjct: 176 EKQLEDAGFIGNKWFL------FSRRIIFPIHDSLGHTLGFSSRKFLENTRGSKYVNTPE 229

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K + L+    +   + K  R          +ILVEG +D L +  +G    +++ 
Sbjct: 230 TMIFKKSRALFGLHLSRRRIAKEKR----------VILVEGQVDCLQMIDSGFNCTLAAQ 279

Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           GT+ TE  ++ L      +  L FDGDD G++AA +  D+       G       L +GE
Sbjct: 280 GTSFTEDHVKELSKLGVLKAYLLFDGDDAGIKAAVRVGDMCQM---AGIAAMVCRLPQGE 336

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF+   G     +L+ +S   +  L  ++       +P E+A +       I    +
Sbjct: 337 DPDSFLMHKGAGVLGELLDQSEDYLTFLISQKMRVYPNFSPREKALVIEETITQIKKWGN 396

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             + Y + + +   +        +                     S  + +  L K    
Sbjct: 397 PIVVYEHLKQLASLMMIPESMVFSLAKLE---------SGIAPAKSSVVNKERLPKIHSD 447

Query: 478 KKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-YF 532
                 E  +L  ++    +H +I          + + + E +KL+S L   + + +   
Sbjct: 448 VII---ETDVLRCMLFCKTHHTSIPHTAKNYFTAMDFKHPECRKLFSHLIEYYEKHQRNL 504

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             +E    L ++   ELL  + R++    L +   ++      + +++      +   LS
Sbjct: 505 PFDEALSLLEDKVIIELL--IKRRMNTDCLETVFVQSLQKLADRQWKE------QRHPLS 556

Query: 593 RQKEEIEKQ 601
           RQ +  +++
Sbjct: 557 RQSKSAQEE 565


>gi|307748494|gb|ADN91764.1| DNA primase [Campylobacter jejuni subsp. jejuni M1]
          Length = 499

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 127/522 (24%), Positives = 235/522 (45%), Gaps = 44/522 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L   + I ++I  Y++  ++ +      +   CPFH +K PS H N +KGFY
Sbjct: 2   ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   GD   F+      SF ++V+++A+++   L       ++K++ + +L  ++ 
Sbjct: 57  HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F  +LK    K +  YL +R ++   I  F+LG+A  S  S+R    QK   E+ 
Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    L    D +   Y  F  R+ FPI   +  ++ FGGRTL+     KY+NSP+ ILF
Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y F  A   + +             II+ EGYMD ++  +AG  N V+ LGTAL
Sbjct: 229 DKSRIFYAFNIAKENIAQK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE+ L L+ +   +++LCFD D+ GL+AA ++  L+  + I G      +L  G+DP   
Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +     T    ++ E + L +   +R     S  +  ++ +    ++    +++   +  
Sbjct: 336 VAKNESTKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  + + L+   +  +   +                 P ++                +
Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 440

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
            E  L+  L  HP I  +  Q    + +   + + L   +  
Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCF---KHKILLDKILE 479


>gi|57168802|ref|ZP_00367933.1| DNA primase, probable CP0919 , putative [Campylobacter coli RM2228]
 gi|57019849|gb|EAL56532.1| DNA primase, probable CP0919 , putative [Campylobacter coli RM2228]
          Length = 608

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 143/625 (22%), Positives = 269/625 (43%), Gaps = 47/625 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L   + I ++I  Y++  ++ +      +   CPFH +K PS H N +KGFY
Sbjct: 2   ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCVCPFHADKNPSMHINPTKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   GD   F+      SF ++V+++A +    L       ++K + + +L  ++ 
Sbjct: 57  HCFACKAGGDAFKFVMDYEKLSFTDAVEKIANLCNFTLSYT----KEKNENKKELRTILP 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F  +LK    K    YL +R ++   I  F+LG+A  S  S+R    +K   E+ 
Sbjct: 113 SLNAYFKSNLK--HHKEALDYLYKRTLNDQDIAKFELGFAGSSEDSIRLFHNEKILLEDA 170

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    L    D +   Y  F  R+ FPI   +  ++ FGGRTL+   + KY+NSP+ ILF
Sbjct: 171 MSVGAL--KKDKNNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVAAKYVNSPQNILF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y F  A   + K             +I+ EGYMD ++  +AG  N V+ LGTAL
Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEMIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE  L L+ +   +++LCFD D+ GL AA ++  L+  H I G      LL  G+DP   
Sbjct: 279 TENHLPLIHRYEAKVILCFDNDEAGLNAATRSAFLLSTHKIDGK---VALLEGGKDPAEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +          L+ + + L +   +R   + S N+  ++ +   +++     ++   +  
Sbjct: 336 VANNQSAKLHTLLEKGMDLGEFYIRRILSSFSLNSALDKQKALENIQKYTFSLE-PLVAS 394

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   +   L    +  +   +              +   +     S       + K  +
Sbjct: 395 SYVGLVSKLLGVDEKLIVLTSNR-------------KPSKTINFNTSFQQTQNHNPKSHI 441

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF----VEQKYFLPEEIH 538
            E  LL  L N+P  + E + +++DIR    + + L   +         + + F  +   
Sbjct: 442 TELELLNYLKNNPN-MHELFIKISDIRCF--KHKVLLEKILEHKSYEDSDIREFESKNFS 498

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           + L +  F   + +++    +    + +  A    +    ++   L  +        E +
Sbjct: 499 KDLSQIEFLWGICKVNLAFLNHINITNSYLALKKQIFTLIEKNFVLLSKNLNDHELVEFL 558

Query: 599 EKQIAQVTAKGEAEKTAILISILHE 623
           ++ +  +  + + EK   L   LH 
Sbjct: 559 KENLFLLKNEKDEEKLEALFKNLHR 583


>gi|163781692|ref|ZP_02176692.1| DNA primase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882912|gb|EDP76416.1| DNA primase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 531

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 157/585 (26%), Positives = 257/585 (43%), Gaps = 75/585 (12%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
              I +L   + I +++ +Y+  +R   N     Y A CPFH +KTPSF+ + S+  + C
Sbjct: 2   PSDIDELRRELDIVDVVSEYIKLERAGNN-----YKANCPFHPDKTPSFYVSPSRQIFKC 56

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C V GD + F+S     S+ E+ + LA   G+ L      ++++   +  L  ++E  
Sbjct: 57  FGCGVGGDAIKFVSLYENVSYFEAAKHLAKRHGIKL-----NLKEESSEKKKLHEIMERV 111

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
            + +H  L+    +R+  YL  RGI+S  I+ F LGYAP S   +R     +G       
Sbjct: 112 AELYHSKLREN--RRVLEYLKSRGIESSTIKRFSLGYAPASGELVRLLKEIRGLEPYLKT 169

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
              L ++        D FRNRL+ PIR + G+V+ FGGR L +GE  KY+NSPE+ LF K
Sbjct: 170 GNLLQVE---EDRYRDLFRNRLVIPIRDASGRVVGFGGRLL-EGEGPKYVNSPESGLFKK 225

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            + LY F+  ++YL+               +LVEGY DV++L Q G +N V++LGT+L  
Sbjct: 226 RELLYGFYEGISYLR----------ELKSALLVEGYFDVIALHQEGFRNTVATLGTSLGR 275

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
              +LL ++  R+ L FDGD+ G +A   A+      L  G  V  V L  G DP  F+ 
Sbjct: 276 EHAQLLSRVVNRVYLLFDGDEAGRKAMRLAV---PHLLRAGLEVFPVFLPEGLDPHDFLL 332

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK + + LI  S+ + D+                  +      +  N +KD     YY
Sbjct: 333 KEGKASLKALIGSSVSVFDL----------------LKKRIESGSDVENSLKDFT---YY 373

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           +  ++DR++      ++E S   R        +  K P          + +   + S  E
Sbjct: 374 ASFLQDRIRAYT--LLSELSRITRIPVDVLSAKMYKAPENS-------EEEDESRLSFTE 424

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              L  L+    +       L +++           +  S   E+ Y +PE++       
Sbjct: 425 KVFLKGLM---ELRPSV--NLDELKLSTKA----REYAQSIINEEYYPVPEDVLNLKVGD 475

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDV---RQGYQQALALYK 586
              E    L      + L     E  I +    R+  ++ +  +K
Sbjct: 476 IEREFEASL------SRLRIDIPEEEISEAVGVRESVREFIRSHK 514


>gi|281412779|ref|YP_003346858.1| DNA primase [Thermotoga naphthophila RKU-10]
 gi|281373882|gb|ADA67444.1| DNA primase [Thermotoga naphthophila RKU-10]
          Length = 565

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 132/608 (21%), Positives = 234/608 (38%), Gaps = 62/608 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            PR+ I+++   + I  ++ +YV+  R  +      Y A CPFH E  PSF+ +     Y
Sbjct: 2   IPREVIEEIKEKVDIVEVVSEYVNLTRVGS-----SYRALCPFHSETNPSFYVHPGLKIY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + FL  + G SF E++++LA   G+ L +   +   +      L    E
Sbjct: 57  HCFGCGASGDVIKFLQEMEGISFQEALEKLAKRVGIDLSIYRAEGTSEYGKYVRLY---E 113

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
                +   L   + K    YL  RG     IE F  GY P+      E       + E+
Sbjct: 114 ETWKRYVKEL--EKSKEAKEYLKSRGFSEEDIEKFGFGYVPERSSISIEVAENMNITPEE 171

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++     I         DRF  R++ PI++  G ++AFGGR+L   E  KYLNSPET  F
Sbjct: 172 LV--RYGIALKKGDRLVDRFEGRIVVPIKNDSGHIVAFGGRSL-GNEEPKYLNSPETRYF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K K L+ F  A    +             F ++ EGY D L+  + G+   V+ LG  L
Sbjct: 229 SKKKTLFLFDEAKKLAK----------EVGFFVITEGYFDALAFRRDGIPTAVAVLGANL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           +   +  L   S  ++LCFD D  G RA  K+++     L     V     S  +DPD  
Sbjct: 279 SREAILKLSAYSKNVILCFDNDRAGFRATLKSLE---DLLEYEFNVLVATPSPYKDPDEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            +  G+ + +K++  S      L          N+P         LK  +  ++    + 
Sbjct: 336 FQKEGEGSLKKMLKNSRSFEYFLVTAGEVFFDKNSPAGVRSYLSFLKGWVQRMR----KK 391

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y + + + +++         +    ++                  +  V    S K   
Sbjct: 392 GYLKHVENLVKEASASLQIPENQILNFF------------ESERSNTMPVHESRSSKIYD 439

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
               L+   +N+    ++  + L     ++   ++ +  + S   E    + E   + L 
Sbjct: 440 EGRGLVYLFLNYEDFREKILE-LDLEVLEDENAKEFFKRVSS--GEDLNEVIENFPKELK 496

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +                  ++ A          + +   L+   + R + ++  EI+  I
Sbjct: 497 D-----------------WIFEAIENIPPPKDPEKFLADLSEKLKIRRIEKRIAEIDDMI 539

Query: 603 AQVTAKGE 610
            + ++  E
Sbjct: 540 RKASSDDE 547


>gi|205355650|ref|ZP_03222420.1| DNA primase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346427|gb|EDZ33060.1| DNA primase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 605

 Score =  267 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 140/623 (22%), Positives = 271/623 (43%), Gaps = 54/623 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L   + I ++I  Y++  ++ +      +   CPFH +K PS H N +KGFY
Sbjct: 2   ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINLTKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   GD   F+      SF ++V+++A+++   L       ++K++ + +L  ++ 
Sbjct: 57  HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F  +LK    K +  YL +R ++   I  F+LG+A  S  S+R    QK   E+ 
Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    L    D +   Y  F  R+ FPI   +  ++ FGGRTL+     KY+NSP+ ILF
Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y F  A   + K             II+ EGYMD ++  +AG  N V+ LGTAL
Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE+ L L+ +   +++LCFD D+ GL+AA ++  L+  + I G      +L  G+DP   
Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +     T    ++ E + L +   +R     S  +  ++ +    ++    +++   +  
Sbjct: 336 VAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  + + L+   +  +   +                 P ++                +
Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 440

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  L+  L  HP I  +  Q    + + +         L    +E+K +   +I +   
Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFES 493

Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           +       + E L  + + V  A L +   + + + +++     +       + +   EE
Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEE 552

Query: 598 IEKQIAQVTAKGEAEKTAILISI 620
           +   + +  +  + EK   ++  
Sbjct: 553 LNNFLKEYLSFLKYEKNEEILQQ 575


>gi|313673329|ref|YP_004051440.1| DNA primase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940085|gb|ADR19277.1| DNA primase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 560

 Score =  267 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 136/611 (22%), Positives = 236/611 (38%), Gaps = 73/611 (11%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
             +L  I I++ I QYVD  R  +      Y   CPFH+EKTPSF    SK  ++CF C 
Sbjct: 6   DAILDRIDIADYISQYVDLKRYGS-----YYKGLCPFHNEKTPSFIVTPSKRLFHCFGCG 60

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
             G+ ++F+      S++++++ LAA AG+     +   +    ++   + +  ++ ++ 
Sbjct: 61  AAGNLITFVMKYNNLSYVDALRMLAAKAGIDFEKTEKLDKSLVFLKQLHLEIHRLSQNY- 119

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
              L     K    Y+  RG     I  F LG  P            K +S + I ++GL
Sbjct: 120 ---LFGEAGKICLEYILRRGFSELEIGEFGLGVIPKGVNLDPIL---KKYSIDVIKKSGL 173

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
               +       +   RL+FPI+   G+VIAF GR L  GE  KY+NSPET +F KG  L
Sbjct: 174 FYYKEGKNIF--KMAGRLLFPIKDQFGEVIAFSGRDL-VGEEPKYINSPETPIFKKGSIL 230

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           YN   A  Y            S   + +VEGY DV+ +   G +NVVSS+GTA T  Q  
Sbjct: 231 YNLDKAKEYA----------LSQKSLFVVEGYFDVIRMWSKGYKNVVSSMGTAFTTEQAM 280

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
           L+ + +   ++ FDGD  G+ AAYK I+                L +GEDP   +    K
Sbjct: 281 LIKRYAENPIVVFDGDQAGINAAYKTIE---PFTAINTIPEVAFLPKGEDP-DSLLLKDK 336

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
             F+  I     L  ++   E  ++   +   RA     L   +++  +  L+  Y   I
Sbjct: 337 EMFDNCISNRKDL--LILMAEIYSKKGGSLSVRASNFKSLIKKLDNFPEANLKNIYLNRI 394

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           ++     F+                                  ++        + E   L
Sbjct: 395 KEIFNLDFEIINENKKIKK------------------------LQNNQKSIKYIYEDDFL 430

Query: 489 LTL--INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
             +  IN   ++    + +    +   + ++++  +  +                 +   
Sbjct: 431 SAIMQINDEEVVSGVIEGIEKEYFLQQDRRRIFEKIVDNLNNSGNID-----ALFNDEEV 485

Query: 547 GELLKQL-----------DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           GELL  L              +    L        +  +R    +      +   + ++ 
Sbjct: 486 GELLSYLVSCKVFEEPYRVAIINKEKLVYNYKSNELRKLRDELSKCADDTLKSLDILKKI 545

Query: 596 EEIEKQIAQVT 606
           +++ K +++  
Sbjct: 546 DKLTKDLSKYN 556


>gi|639846|dbj|BAA03516.1| DNA primase [Lactococcus lactis subsp. lactis]
          Length = 393

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 130/415 (31%), Positives = 198/415 (47%), Gaps = 27/415 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           +   + + DL   + I++LI QYV   R   N     Y   CPFH EKTPSF+ N  KGF
Sbjct: 3   SLDTEVVNDLKSKVNIADLISQYVALSRTGKN-----YIGLCPFHGEKTPSFNVNAEKGF 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y+CF C   GD + FL       F+++V+ LA  AGV L + D + E+K      L  + 
Sbjct: 58  YHCFGCGRSGDAIEFLKEYNQVGFVDAVKELADFAGVTLNISDDR-EEKNNPNAPLFEIN 116

Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
             A   ++  L +    +R   YL+ERGI    I+ F +G AP+    + ++L  K    
Sbjct: 117 NQAARLYNILLMSTELGERARKYLEERGITDDVIKRFNIGLAPEENDFIFKNLSNK---F 173

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238
           ++ I A   +   ++   +D F NR++FPI +  GQ I F GR   + +    KY+N+  
Sbjct: 174 DEEIMAKSGLFHFSNNKVFDAFTNRIMFPITNEYGQTIGFSGRKWQENDDSKAKYINTSA 233

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K   L+N   A   + K             + L+EG+MDV++  +AG+ NVV+S+
Sbjct: 234 TTIFDKSYELWNLDKAKPTISKQ----------HEVYLMEGFMDVIASYKAGINNVVASM 283

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTALTE  +R L +++ + VL +DGD  G  A YKAIDL     I  + V  V +  G D
Sbjct: 284 GTALTEKHVRRLKQMAKKFVLVYDGDSAGQNAIYKAIDL-----IGESAVQIVKVPEGLD 338

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
           PD + + YG      L+                  +      + +    +   I 
Sbjct: 339 PDEYSKNYGLKGLSALMETGRIQPIEFLIDYLRPENLANLQTQLDFIEQISPMIA 393


>gi|329943169|ref|ZP_08291943.1| DNA primase [Chlamydophila psittaci Cal10]
 gi|328814716|gb|EGF84706.1| DNA primase [Chlamydophila psittaci Cal10]
          Length = 591

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 146/609 (23%), Positives = 253/609 (41%), Gaps = 55/609 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y  + + +L   I I  ++ +++   R         Y ACCPFH EKTPSF  N +  +Y
Sbjct: 2   YTEESLDNLRHSIDIIEVLSEHLHLKRSG-----DTYKACCPFHVEKTPSFIVNPTGAYY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120
           +CF C   GD +SFL   LG SF E+V  L+    V   + + D +       + +L ++
Sbjct: 57  HCFGCGAHGDAISFLMNHLGYSFSEAVLTLSKKFHVDLVIKIKDTQSPFATGAKDELRQI 116

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A   F   L   A  +    YL  RG     I  F LGYAP+        +R+KG S
Sbjct: 117 NAEAEKLFRFCLYQLAEGREALQYLYRRGFSPDTIGRFHLGYAPEQ-TLFVHAMREKGIS 175

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPE 238
           E+++ +AG + +          F  R+IFPI  S G  + F  R  L      KY+N+PE
Sbjct: 176 EKQLEDAGFIGNKWFL------FSRRIIFPIHDSLGHTLGFSSRKFLENTRGSKYVNTPE 229

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T++F K + L+    +   + K  R          +ILVEG +D L +  +G    +++ 
Sbjct: 230 TMIFKKSRALFGLHLSRRRIAKEKR----------VILVEGQVDCLQMIDSGFNCTLAAQ 279

Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           GT+ TE  ++ L      +  L FDGDD G++AA +  D+       G       L +GE
Sbjct: 280 GTSFTEDHVKELSKLGVLKAYLLFDGDDAGIKAAVRVGDMCQM---AGIAAMVCRLPQGE 336

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF+   G     +L+ +S   +  L  ++       +P E+A +       I    +
Sbjct: 337 DPDSFLMHKGAGVLGELLDQSEDYLTFLISQKMRVYPNFSPREKALVIEETITQIKKWGN 396

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             + Y + + +   +        +                     S  + +  L K    
Sbjct: 397 PIVVYEHLKQLASLMMIPESMVFSLAKLE---------SGIAPAKSSVVNKERLPKIHSD 447

Query: 478 KKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-YF 532
                 E  +L  ++    +H +I          + + + E +KL+S L   + + +   
Sbjct: 448 VII---ETDVLRCMLFCKTHHTSIPHTAKNYFTAMDFKHPECRKLFSHLIEYYEKHQRNL 504

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             +E    L ++   ELL  + R++    L +   ++      + +++      +   LS
Sbjct: 505 PFDEALSLLEDKVIIELL--IKRRMNTDCLETVFVQSLQKLADRQWKE------QRHPLS 556

Query: 593 RQKEEIEKQ 601
           RQ +  +++
Sbjct: 557 RQSKSAQEE 565


>gi|189485246|ref|YP_001956187.1| DNA primase [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287205|dbj|BAG13726.1| DNA primase [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 588

 Score =  266 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 141/636 (22%), Positives = 279/636 (43%), Gaps = 59/636 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVD-WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M    D I+ + +   I ++I +Y+    R   N     +  CCPFH+EKTPSF  +  K
Sbjct: 1   MVISEDTIEKIRLSNSIDSVIREYLPDLKRAGRN-----WKVCCPFHNEKTPSFIVSPEK 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
           G + CFSC+V GD   F+  L   S+IE+V++LA    + +     +   K    T L  
Sbjct: 56  GIFKCFSCNVAGDVFKFVMFLDNISWIEAVKKLAKKTNIEI-QEAKQGIIKLSENTKLFD 114

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           ++E + +F++  L      ++   Y+ +RGI+  A+  FK+G+AP  +    +   +K +
Sbjct: 115 ILESSANFYNKCLLERASAQKAREYIKKRGINREAVNKFKIGFAPKGQ--FLQWALEKDY 172

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
            ++ +++AGL I        ++    R++FPI   +G+++AFGGRT+     +KYLN+PE
Sbjct: 173 KDDDLLKAGL-ITRTGRGIFFECMSERVVFPIFDVQGRIVAFGGRTI-ADHKIKYLNTPE 230

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++ K  NLY  F  L  L+K  +          II++EGY+D + L Q G+   V++L
Sbjct: 231 TAVYSKSSNLYGLFQTLPELRKERK----------IIVLEGYIDAVILQQFGITGAVATL 280

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T+   +L+ + S  + L FD D+ G  AA +++++    +          L    D
Sbjct: 281 GTAFTQNHAKLVSRYSDSVTLLFDSDNAGRTAAQRSLEI---LVGDSIECRVSALPEHVD 337

Query: 359 PDSFIRCYGKTAFEKLIVE-SLPLVDMLWKR----ETENRSFNTPDERAELEIHLKNCIN 413
            D ++  YGK +F K + + S   +D + +R     + +   ++P+ +A+    L + + 
Sbjct: 338 ADEYLNQYGKESFLKFLEDSSKSAIDFMIERVLGGLSSDGRKSSPEIKAKAVSALLDFVA 397

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
              +  ++  + + I   +    +    E     +   +     D+    Q +      K
Sbjct: 398 RSTNSIIQREWIRDIAQHVDVNEEAVWREFEKKQQLRLRGYLQYDKNSVEQTVKVKKDKK 457

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             +S + +L                ++  ++     +++   +K++              
Sbjct: 458 FSMSLEENLLNLI---------LNNRDYIKKTDSNCFEDARCRKIFEL------------ 496

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                  L   G    L + D+      + +    ++I +      + +   +  R   R
Sbjct: 497 ---TVSGLNTVGILNTLSEEDKNWFAELILNTIEYSDIGEAFGIILRDIDAGRLERERRR 553

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            ++EI      + ++G+ EK   +     ++   + 
Sbjct: 554 LEKEIL-----LVSEGKKEKDKKVFDEYKKLTALLK 584


>gi|88608559|ref|YP_506825.1| DNA primase [Neorickettsia sennetsu str. Miyayama]
 gi|88600728|gb|ABD46196.1| DNA primase [Neorickettsia sennetsu str. Miyayama]
          Length = 579

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 158/636 (24%), Positives = 281/636 (44%), Gaps = 65/636 (10%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           + +I+ +   IP+S ++ + V   R  +          CPFH EKTPSF  ND   F+YC
Sbjct: 3   KKYIELIKERIPVSEVVSRTVKLKRVGS-----RLIGRCPFHQEKTPSFSVNDKGKFFYC 57

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C   GD + F+S        E+V+ LA+  G+ +   +   E   ++     + +E  
Sbjct: 58  FGCGKSGDVIDFVSLTKRLDLSEAVEELASSIGIKIDKKNSGTESFIQV----FQFLEEL 113

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
            D+F  +L +   +   YY+  R  D   I  FKLGY P          + K F    I 
Sbjct: 114 RDWFCSNLNSRVGQEASYYIRNRL-DDDVISEFKLGYCP--SNLTSFINKTKNFPSTVIK 170

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
            +G+L            FR+RL+FPI + +G+VI FG R + +G   KY+NS ET  F K
Sbjct: 171 NSGVLDKLGR-----CYFRDRLVFPIHNIQGKVIGFGSRVVKEGIFPKYINSCETEFFKK 225

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            + LYN               + +NS   IILVEGYMDV+SLCQ G ++V+  LGT++T 
Sbjct: 226 SELLYNIDK------------IPKNSEEPIILVEGYMDVISLCQFGYKSVLGILGTSITS 273

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN--FVLLSRGEDPDSF 362
           + L+LL +L   ++ CFDGD+ G++AA + ++L++   I    +   F  L  G+DPD  
Sbjct: 274 HHLKLLNRLRRNLIFCFDGDNAGIKAAGRVVELIMDEFINSLEIKTTFSFLPIGKDPDDL 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +R     AF++++  +  L D ++      R  ++P++  ELE  L+  + ++KD K+R 
Sbjct: 334 VRSDRA-AFQRVLDGARSLSDTIFFLAKYGRQCSSPEDFIELEKILEKYLINVKDYKIRK 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
           ++    + ++  L +              +           ++L  S+ +          
Sbjct: 393 HFQDFFQQQIFLLKRSLRQR---NFIPAYRGGEDATHFVDVKKLSSSASIHVDKKV---- 445

Query: 483 REAALLLTLINHPAILQ--EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
               LL  +I  P IL+  ++ +  + ++  +    KL S +              +   
Sbjct: 446 ---LLLKIVIKFPEILRNGDREEYFSLLKLSDPRHVKLQSSIVQLLNTSIDISGASLE-- 500

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK--EEI 598
                   LL   + +     L    +      +    ++A  L+ R   L +Q   +E+
Sbjct: 501 ------RALLADSETEASYKLLSDLAS------LPDDIEKATFLWDR---LQKQLWRDEL 545

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++  ++    + +     +     + ++I + E +
Sbjct: 546 REEYRRMIHSSDLD--ENKMEEAQRILVKIREAEKE 579


>gi|187918566|ref|YP_001884129.1| DNA primase [Borrelia hermsii DAH]
 gi|119861414|gb|AAX17209.1| DNA primase [Borrelia hermsii DAH]
          Length = 593

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 140/643 (21%), Positives = 252/643 (39%), Gaps = 63/643 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y +  I  +   + I  LIG+ V   +         Y   CPFH EKTPSF    S+G
Sbjct: 1   MEYAK-VIDLIKQRVDIVGLIGERVRLVKAGA-----SYKGLCPFHAEKTPSFSITPSQG 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV---PLPVVDPKIEKKEKIQ--T 115
            +YCF C   GD + FL  +    + ++V+ L +  G+    +        K +     +
Sbjct: 55  LFYCFGCRRGGDVIKFLMDIEKLDYNDAVKSLCSRIGIAYDEIKKTTGFKNKTQDKALIS 114

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLH--YYLDERGIDSHAIEMFKL---GYAPDSRYSLR 170
            +  L       F   L N +D +    Y L ERGI    I +F +         +    
Sbjct: 115 KIYDLNARLVKTFLFFLNNNQDNQGVLNYILKERGISKEVINLFNIGYLRCDVPGKLGFY 174

Query: 171 EHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
           + L  KG+S+E + ++GL          +     RLIFPIR  +G V+ FGGR L K   
Sbjct: 175 DFLVLKGYSDELLSKSGLFAK---QNRRFSILSGRLIFPIRDFKGNVVGFGGRDLGKNNG 231

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KY+NS ET +F K + LY F+   + ++           S  +IL EGY+DVLS   AG
Sbjct: 232 PKYINSSETEVFKKRELLYGFYEGFSVIR----------ESKSVILTEGYIDVLSFFTAG 281

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           V+  VS+LGT+ +   L L+ + + +I+LCFD D  GL A +KA  + L        V+ 
Sbjct: 282 VKFAVSTLGTSFSREHLALIRRHADKIMLCFDDDAAGLAATFKAYQICLPF---NVDVSV 338

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           + +  G DP   ++  G +  + +I ++    + L ++ +     N   +   +      
Sbjct: 339 IRMKYGADPADVLKNKGASVLKNMINDNCEAFEYLLEKYSAKYDLNKTTDLNGMINLFIT 398

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            I+       R    + +  R+    +                   +D     +R   +S
Sbjct: 399 LISLSSTNTQRDLLLEKLESRVGIKLETLR----------------KDYYSMRERSAIAS 442

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
             K   S + +  E  LL+ L+          + ++D    + ++++++      F   K
Sbjct: 443 YKKNTSSYEINTYERYLLVALLKDFNYFTIIRRNISDSDLYDVDVKRIFVCFEKLFENNK 502

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            F    + + L  +               + ++         +V     + +    + R 
Sbjct: 503 GFSLLNLRELLKNK------------HSVSEVFFENMLRVEFEVDDEMVKQILFAIKKRK 550

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILI---SILHEVHIQIHQ 630
           +  +    ++      +     +   L+        + I +++
Sbjct: 551 VENRILVFKEMSRDNFSIDAKAQIRELMFLNMQRENLRIYLNE 593


>gi|257126629|ref|YP_003164743.1| DNA primase [Leptotrichia buccalis C-1013-b]
 gi|257050568|gb|ACV39752.1| DNA primase [Leptotrichia buccalis C-1013-b]
          Length = 607

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 152/635 (23%), Positives = 271/635 (42%), Gaps = 51/635 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y  + I+ L+ ++ I  +IG+YV+  +  +     DY    PF DEKTPSF  +  K 
Sbjct: 1   MFYSEEEIQKLIDNLDIVEVIGEYVNLKKAGS-----DYKGLSPFKDEKTPSFTVSPVKN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------DPKIEKKEKIQ 114
            +  FS  + G+ +SF   +    F+++V+ L+    +PL           KI +K+   
Sbjct: 56  IFKDFSTQIGGNVISFYMKINDIGFVQAVEELSQKYNIPLKKSGKSQIVSQKISEKQAEN 115

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            +   ++  A  FF ++    + +    Y+  R      ++ FK+G+A   R  L ++L 
Sbjct: 116 KEYFEIMNEAQTFFENN--VEKYEEALEYMKNRDFSLEDMKKFKIGFASSIRDGLFQYLI 173

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKY 233
           +K FSE KI++ GL      +   YD FRNR+IFPI +  G+++AFGGR + K  +  KY
Sbjct: 174 EKNFSENKIMKLGLAKRN-ENGEIYDSFRNRIIFPIYNIEGKIVAFGGRIIEKNSNLPKY 232

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSP++ +F KG+ L+              +        F IL+EGY+DVL+  + G +N
Sbjct: 233 LNSPDSPIFKKGRELFGI----------KYQGGNVKKKGFAILMEGYLDVLTAQKNGFEN 282

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGTA TE Q +LL K + +I++ +D D+ G  A  KA  ++  +      +  VL 
Sbjct: 283 AVASLGTAFTEEQAQLLKKYTDKILIAYDNDEAGRNAVIKAGYILKKYDFDIKCL--VLK 340

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +DPD F+R  GK AF +++ ES  + D L    ++       D   +     K   +
Sbjct: 341 GEEKDPDEFLRKNGKKAFIEVVKESKEIFDFLILEFSKEMDLKDVDNVTKFIRKFKPFFS 400

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           ++ D   +  Y Q +             E                    + +       K
Sbjct: 401 NVTDNLRKNLYLQKLSTEFGIDGFILKEELGNLTPEKSPKKPRISSDENTVKF------K 454

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                     E    +  +      +++ ++L + ++ ++   KL   + +   + +   
Sbjct: 455 KLKEDLYIELEKQTFIYFLKCYDSEKQKCEKLLNKKFSSSIFNKLVEDMKTINFDIRKLD 514

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRLL 591
             +I +              + ++     +SA  +    D+  R+ Y   +   KR    
Sbjct: 515 KIDITKE-------------ESEIIMGLQFSADKDIKDKDIYFREIYFGWI---KREIDE 558

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            RQK + E    +     +       IS + E+  
Sbjct: 559 ERQKSDEENDKIKKLELKKILLKLKNISKIDEIEK 593


>gi|283953744|ref|ZP_06371275.1| LOW QUALITY PROTEIN: DNA primase [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794785|gb|EFC33523.1| LOW QUALITY PROTEIN: DNA primase [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 605

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 132/522 (25%), Positives = 239/522 (45%), Gaps = 44/522 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L   + I ++I  Y++  ++ +      +   CPFH +K PS H N +KGFY
Sbjct: 2   ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPAKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CFSC   GD   F+      SF ++V++ A+++   L       ++K++ + +L  ++ 
Sbjct: 57  HCFSCKAGGDAFKFIMDYEKLSFADAVEKAASLSNFTLSYT----KEKQENKKELKSILP 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F  +LK    K +  YL +R ++   I  F+LG+A  S  S+R    QK   E+ 
Sbjct: 113 SLNAYFKDNLK--HHKEVLIYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    L    D +   Y  F  R+ FPI   +  ++ FGGRTL+     KY+NSP+ +LF
Sbjct: 171 MSVGAL--KKDENNEFYSSFIWRITFPIYDQKDLLVGFGGRTLNPNIPAKYVNSPQNVLF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y F  A   + K             II+ EGYMD ++  +AG  N V+ LGTAL
Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFDNAVAVLGTAL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE+ L L+ +   +++LCFD D+ GL+AA ++  L+  + I G      +L  G+DP   
Sbjct: 279 TEHHLPLIRRYEAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +          ++ + + L +   +R     S N+  ++ +    ++    +++   +  
Sbjct: 336 VAKNESAKLHDILDKGIELGEFYIRRLISAYSINSALDKQKALETIQKYTFNLE-PLVAN 394

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  + + L+   +  I                ++ K P Q  + S        +K  +
Sbjct: 395 SYTNLVSNLLKVDEKFIIL--------------SQNPKKPIQTPLISQNRYNFHKEKIHI 440

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
            E  L+  L  HP I  +  Q    + +   + + L   +  
Sbjct: 441 AELELIAFLKQHPDICSDFKQISDSVCF---KHKILLDKILE 479


>gi|222824479|ref|YP_002576053.1| DNA primase [Campylobacter lari RM2100]
 gi|222539700|gb|ACM64801.1| DNA primase [Campylobacter lari RM2100]
          Length = 595

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 143/636 (22%), Positives = 262/636 (41%), Gaps = 69/636 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I+ LL    I ++I  YV+  ++ +      Y   CPFHD+K PS H N  KGFY
Sbjct: 2   IEQTSIEQLLQKTDIVDIIAHYVEVKKQGS-----SYVCVCPFHDDKNPSMHINSIKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   G+   F+      +F+E+V+++A+     L        +K++ +  +  ++ 
Sbjct: 57  HCFACKAGGNVFKFVMDYEKLNFVEAVEKVASWNNFSLTYTS----QKQENKKSITHILP 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           +   F+  +L  +++K    YL +RG++   I  F+LG+AP S  +LR     K  +  +
Sbjct: 113 ILNAFYKQNL--SKNKEALTYLYKRGLNDEDIRTFELGFAPSSNETLRLL---KNENISE 167

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                      N    Y  F NR+ F I   +  +I FGGRTL +    KY+NSP++ LF
Sbjct: 168 EEALEAGAIKQNENGIYASFINRITFSIYDHKNLLIGFGGRTLDEANMAKYVNSPQSKLF 227

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y    A + + K             +I+ EGYMD ++  +AG +N V+ LGTAL
Sbjct: 228 DKSRIFYALHLAKDEIYKK----------KEMIICEGYMDAIAFHKAGFKNAVAVLGTAL 277

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
            E  + L+ +L  R++LCFD D+ GL AA ++  L+    I G     VL+  G+DP   
Sbjct: 278 GENHIPLIKRLQARVILCFDNDNAGLNAAVRSAHLLSLAKIDGK---VVLIEGGKDPAEL 334

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +  + +      + + + L +   +    +   N+   +      ++    +++   +  
Sbjct: 335 VASHQEKLLFSTLEKGIELGEFYIRNLITHFDLNSALNKQNALEEVQKYTFNLE-PLIAN 393

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   + + L    Q                         + R   + +   K SK  ++
Sbjct: 394 SYINLVANLLGVNIQDIKL-------------------SKNTRKNTNFINPIKQSKINNI 434

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  LL  L  +   +       A   +       L   +    +EQK F    I +   
Sbjct: 435 SELELLKFLYENNETIGLFKLLSAKEYF-------LHQDITKAILEQKNFEDPNIRELYE 487

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ- 601
                  L  L+  +             I  +   Y   L      +   +Q   +  Q 
Sbjct: 488 FENIKN-LSNLEEFLY-----------AICKINLAYFNKLKSLNLKQAFKKQIYNLLNQN 535

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           + ++    + ++    ++ L EV   +H ++ +E++
Sbjct: 536 LEKIKKSYQNDEVF--LNHLLEVLKSVHFLDDEESL 569


>gi|46446324|ref|YP_007689.1| DNA primase [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399965|emb|CAF23414.1| putative DNA primase [Candidatus Protochlamydia amoebophila UWE25]
          Length = 592

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 141/627 (22%), Positives = 246/627 (39%), Gaps = 47/627 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           + ++ +++L   + +  ++  +++  R         Y   CPFHDEK+PSF        Y
Sbjct: 4   FNKESLENLRQRVDLVEVLSSHIELKRSGA-----SYKGLCPFHDEKSPSFIVQKGDSHY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + FL +    SF ESV+ LA    V L +V+ + EKK   +  L   +E
Sbjct: 59  HCFGCGAHGDAIQFLMSHQKLSFAESVESLAQRFQVHLELVEDREEKKGVTKAFLKLALE 118

Query: 123 VATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
            A+ FFH+  L +        YL  RGID   I  F++G AP +    R+ +  KG  ++
Sbjct: 119 TASQFFHYCLLYSEEGHEALNYLYNRGIDLDFICHFQVGLAPKTAGIFRKFMHAKGIKDD 178

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPETI 240
            ++EAGLL   +      + F +R++FPI      VI F GR    +    KY+N+PET 
Sbjct: 179 SLLEAGLL-SVNKDGQVREFFNDRILFPIHHHSQGVIGFSGRKYKEETFGGKYINTPETS 237

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF K + L+    +   + K  +           I+VEG +D L L Q G    V+  GT
Sbjct: 238 LFKKSRVLFGLNYSRRRIAKERKA----------IIVEGQIDALRLIQMGFNLTVAGQGT 287

Query: 301 ALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           A  E  ++ L      ++ L  D D  G  A  K   L       G  V  V L  G DP
Sbjct: 288 AFGEGHVQELINLGVNQVFLALDSDLAGQEATSKIGHL---FQKEGIEVRIVQLPVGGDP 344

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           DSF+R  G  AF +L+  S   ++ L K  +++ + ++P  + EL       I       
Sbjct: 345 DSFLREQGPEAFLELLKNSSDYLNFLIKHLSQDLNLDSPAAKNELVQKATKLIREWDHPL 404

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           + +   + +   ++    + I              +       +    +           
Sbjct: 405 MVHETLRKLAHLMKV--PEEIIGVGKNHLPNIYIKKSASVGAQTIDPDRILETDLLRWLL 462

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +E            +++     L    +     QK++    +++  Q+      +  
Sbjct: 463 LLGQEQT---------KLVEIVRTNLVKEDFRVAICQKIYDIYRNNYENQRSCDLLSLAI 513

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L +     +L  L ++  +                Q   + +        + ++ EEI+
Sbjct: 514 DLDDAEGQLVLSDLLQKKVNK-----------EKAEQLLIETVKKILDRNWMHKR-EEIK 561

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHI 626
            ++       +  +   LI    E+  
Sbjct: 562 IKVQSGHCSDD--EVMELIKQFDELKR 586


>gi|320449788|ref|YP_004201884.1| DNA primase [Thermus scotoductus SA-01]
 gi|320149957|gb|ADW21335.1| DNA primase [Thermus scotoductus SA-01]
          Length = 576

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 146/626 (23%), Positives = 265/626 (42%), Gaps = 67/626 (10%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           ++ +   + +  ++ +YV           G +   CPFH EKTPSF+ ++ KG ++CF C
Sbjct: 7   VEAIKRRLSLKEVVSRYVALKPAGR----GRWKGLCPFHQEKTPSFYVDEEKGLFHCFGC 62

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
              GD  +F+  + G  F+ +++RLA  AGV +P      +++E     L+ +++++ ++
Sbjct: 63  KAGGDLFAFVERIEGLDFMGALERLAEEAGVEIPKAGAPAKRRE-----LLDVLKLSQEY 117

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
           F   LK + + +   YL  RG+   +I  F LGYAP     L  HL + G S E+ ++AG
Sbjct: 118 FLEGLKASLEAQE--YLQRRGLSPESIARFGLGYAPAKGDGLLTHLSRHGISPEEGLKAG 175

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247
           +L + D     YDRFRNR+ FPI+   G+++AF GR L   E+ KYLNSPET LF K + 
Sbjct: 176 VLAEKDG--RFYDRFRNRITFPIKDHLGRIVAFTGRAL-GEETPKYLNSPETPLFRKREV 232

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           L+ +  A   L+               I+VEG  D ++L Q G    V+ LG+ L+E Q 
Sbjct: 233 LFAYPEAKAKLR-----------QGRAIVVEGLFDAIALHQMGFAEAVAVLGSGLSEEQA 281

Query: 308 RLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS-FIRC 365
           RLL  +    + L FD D+ G RA  +++DL L        + + +    +DP    +  
Sbjct: 282 RLLEMQEVREVYLAFDADEAGQRATLQSLDLSLAR----KFLFYAVRLPSKDPGDLLLLP 337

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            G   F+K + E+LP V+  ++  T       P+ + ++   L   +       L     
Sbjct: 338 EGPALFQKALEEALPEVEFRFQEATRGLDLTRPEHKRKVLEALTPRM-------LSPEPF 390

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             + DRL+ L  + +                        R       K +   +  L E 
Sbjct: 391 DPVADRLKALVVERLGLSLRQLE-------DYLASLKRGRRPPPQPPKAEPKNRVLLLEL 443

Query: 486 ALLLTLINHPAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            ++  L++ P   +   + +             L S        +               
Sbjct: 444 DVMALLLSLPE--ERFAEWVHHTALHVWPPEGSLLSEFLELASREPRRD----------- 490

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              ++L + +               +     +  ++ LA  +    L R+  ++++++++
Sbjct: 491 YLRQVLSRKEAGGILLERLMLVPSVDEPRFPEILEKTLARLREAYYLERR-AKLKEELSR 549

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQ 630
                    +  ++  + E+   I  
Sbjct: 550 -------NPSMEILREIQELDQAIEA 568


>gi|257460243|ref|ZP_05625346.1| DNA primase [Campylobacter gracilis RM3268]
 gi|257442308|gb|EEV17448.1| DNA primase [Campylobacter gracilis RM3268]
          Length = 708

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 124/570 (21%), Positives = 215/570 (37%), Gaps = 71/570 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I++LL  + I +++ +YV   R   N     +   CPFHD+  PS   +   G +
Sbjct: 2   IKNESIENLLATVDIVDVVEKYVPLKRSGAN-----FVGVCPFHDDSHPSMSVSSKLGIF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CFSC   G+ + F+      SF E+V++LA +    L     K++++ + +  L  L  
Sbjct: 57  HCFSCKAGGNAIKFIQDYEKISFPEAVEKLAGMYNFALQYTGAKVQERSEEKKVLGILNA 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               ++   L          YL +RG+   +I  F LGYA  S  ++R  L+ +    + 
Sbjct: 117 ----YYQSCLYQNPAA--VKYLHDRGLSDQSIRKFGLGYAGASAQTIR-VLQNEEIPPQD 169

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
            + AG +    N    Y  F  R+ FPI +   +++ FGGRT+      KY+NSP+  LF
Sbjct: 170 ALNAGAVKQ--NERGLYASFIERITFPIYNHASKLVGFGGRTI-SDNPAKYVNSPQCALF 226

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K K  Y F  A                   +I+ EGYMDV+ L QAG+ N V+ LGTAL
Sbjct: 227 DKSKIFYAFDLAKKSAIAK----------KTLIITEGYMDVIMLHQAGIDNAVAVLGTAL 276

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T   L L+ +    +VL FDGD  G+ AA K+  L     +     +  ++  G DP   
Sbjct: 277 TPAHLPLIKRAELNVVLSFDGDAAGINAAIKSARL---LCLNKIDSSVAIIGGGADPADM 333

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I        E++    +   + L +R  +      P ++      +K     +    L  
Sbjct: 334 IAAGKVRELEQIYASGMESGEFLIRRIAKKYDLARPVQKEAALNEIKEFTAALG-PVLAE 392

Query: 423 YYSQAIRDRLQQLFQKYITEHSGY------------------------------------ 446
            Y   +   L      +     G                                     
Sbjct: 393 SYQSLVAQILNVSPGSFNLSSGGKNFGAGFEGRNFNESGSFGSRDFGAYGGHNADGRDGA 452

Query: 447 ----GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                      A++  +   S     S+ +   L ++  + E  ++ +++    + +   
Sbjct: 453 SGSLNGGNFDRAQNTARYESSAPPAASARLGRTLLRRKEIAELQIIKSMLLDGEMAELGL 512

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYF 532
             L    +       ++    +       F
Sbjct: 513 GCLERRDFR--MHGDIFEAFLAFSRSGGNF 540


>gi|207743820|ref|YP_002260212.1| dna primase protein (partial protein n terminus) [Ralstonia
           solanacearum IPO1609]
 gi|206595220|emb|CAQ62147.1| dna primase protein (partial protein n terminus) [Ralstonia
           solanacearum IPO1609]
          Length = 300

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 104/307 (33%), Positives = 155/307 (50%), Gaps = 30/307 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL  + I +++G+YV   +   N     +   CPFH+EK+PSF  + +K FY
Sbjct: 2   IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-----IEKKEKIQTDL 117
           +CF C   G  + FL    G S++E+++ LA  AG+ +P            +++     L
Sbjct: 57  HCFGCGAHGSAIGFLMEFSGLSYVEAIRDLAQSAGMVVPEERGGLPPGARAERQAKTVAL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             ++  A D +   L++        YL  RG+       F LGYAPD   SL        
Sbjct: 117 GDVMARAGDHYRKQLRS--AANAIQYLKGRGLTGEIAGHFGLGYAPDDWQSLEAVFGAYR 174

Query: 178 FSEEKI--IEAGLLIDGDN-----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
                +  IEAGL+I+ +          YDRFR+R++FPIR+++G VI FGGR L +GE 
Sbjct: 175 DDAIAVPLIEAGLVIESEKTDADGRHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LF KG  LY  F A N ++             ++++VEGYM V++L  + 
Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFGYVLVVEGYMAVVALAHSR 283

Query: 291 VQNVVSS 297
                + 
Sbjct: 284 FAIARAL 290


>gi|260910204|ref|ZP_05916881.1| DNA primase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635708|gb|EEX53721.1| DNA primase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 1303

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 116/449 (25%), Positives = 201/449 (44%), Gaps = 27/449 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             + FI  +   + I N++  + +  +   N     Y   CPFH++  PS   +  K   
Sbjct: 2   IDKLFIDKVKSALNIVNVVESFTNLQKAGIN-----YKGICPFHNDSHPSMVVSPVKQTC 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   GD + F+   L  +F E+++  A +A +  P      + E++ +++      
Sbjct: 57  HCFVCGAGGDVIEFVKQHLNLTFPEALRWCANLANIEFPEKEMTSEEEQRYRLRESNFIA 116

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           IE A  F+   L +A D     +L +RG       +   G     + ++           
Sbjct: 117 IEAAAKFYRDHLSHASD-----FLSKRGYKPTDKAIEAFGVGYAPKGNVVMKQLISAGYS 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPET 239
              ++   +I        YD F +RL+FP    +G ++ F GR    +  + KY+N+ ET
Sbjct: 172 SDRLKDVGIIATSTEGYDYDFFNDRLVFPFYDLQGHIVGFSGRMVTPRENAGKYVNTGET 231

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LF KGK+L+  + A   + K            F+ LVEG  DVLSL   GV+NV++  G
Sbjct: 232 ALFTKGKHLFGLYQARKAIGKK----------GFVYLVEGQFDVLSLHAVGVENVIAGSG 281

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T+ Q+RL+ + + ++V+ +D D  G++AA+K  +L    L  G  V  V L +G+DP
Sbjct: 282 TAFTDEQVRLITRFTQQVVMIYDADPAGIKAAFKNCEL---LLKAGVNVKGVRLPKGKDP 338

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D F R       EKL+ +       L+K+    R  N PD   ++   + + + +++D  
Sbjct: 339 DDFARENKAQ-TEKLLKDKTETFPKLFKKLLLPRGENAPDVINDVLNDIASLVANVQDAT 397

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
           LR  Y + +    +        +     R
Sbjct: 398 LRMGYMKELAKDFEMKLDLVDRKVRDLRR 426


>gi|281425079|ref|ZP_06255992.1| DNA primase [Prevotella oris F0302]
 gi|281400923|gb|EFB31754.1| DNA primase [Prevotella oris F0302]
          Length = 1324

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 210/463 (45%), Gaps = 32/463 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             + FI+ +   + I N++  +    +   N     Y   CPFHD+ TPS   + S+  Y
Sbjct: 8   IDKIFIEKVKSALNIVNVVESFTHLRKAGVN-----YKGVCPFHDDHTPSMVVSPSRQTY 62

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   GD +SF+   L  SFIE+++  + +AG+  P     P+ E K K +      
Sbjct: 63  HCFVCGASGDVISFVQNHLNLSFIEALRWCSTLAGLEFPQKQMTPEEEAKYKQKEAQRIA 122

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           IE A  FF  +L                +   A+  F +GYAP    ++ E  +      
Sbjct: 123 IEAAARFFQKNLLQ---AESFLATRGYALTDKALADFGIGYAPAGNIAITELTK---AGY 176

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
            + +   + I G N+   YD+FR+R++FP    +G +I F GR ++  + V KY+N+ ET
Sbjct: 177 SQELLQEVDIIGCNAGRKYDKFRDRVMFPFYDMQGHIIGFSGRIITPKDGVGKYVNTGET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LF KGK+++  + A   + K            F  LVEG  DV+SL + G++NV+   G
Sbjct: 237 PLFTKGKHIFGLYQARKAIGKQ----------GFAYLVEGQFDVMSLHKVGIENVIGGSG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T+ Q++LL + +  IV+ +D D  G++A+ K  +L    L  G +V  + L +G DP
Sbjct: 287 TAFTDEQIKLLLRFTDYIVMIYDADAAGVKASLKNCEL---LLKAGAKVKCIRLPKGTDP 343

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D F +  G   +EKL   + P     +KR          +  +E    + + +  + D  
Sbjct: 344 DDFAKANGNHTYEKLKELTEPFP-KAFKRMLIPYGCKDENIISECLNSICSLVACVGDAG 402

Query: 420 LRYYYSQAIR----DRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           LR  Y ++I      ++  +  K             K      
Sbjct: 403 LRLEYIKSIAADFKSKIGIIDDKVRNIRIKIKEALPKTKTQSG 445


>gi|303235875|ref|ZP_07322478.1| DNA primase [Prevotella disiens FB035-09AN]
 gi|302483748|gb|EFL46740.1| DNA primase [Prevotella disiens FB035-09AN]
          Length = 1307

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 119/466 (25%), Positives = 206/466 (44%), Gaps = 32/466 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++FI+ +   + I +++ ++V   +   N     +   CPFHD+ +PS   + S+  Y
Sbjct: 2   IDKNFIEKVKSALNIVDVVEKFVHLQKTGAN-----FKGVCPFHDDHSPSMVVSPSRQTY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   GD ++F+   L  SFIE+++  A  AG+  P      + E K K +      
Sbjct: 57  HCFVCGASGDVVAFVQEHLNLSFIEALRWCANQAGIDFPKQEMSKEDEDKYKHKEAQRIA 116

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           I+ A   +  SL      +   +L +RG D     +   G       ++  +   K    
Sbjct: 117 IDAAAKLYQKSL-----PQATTFLSQRGYDISDKSLSDFGVGYAPTGNVAMNTLSKDGYS 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPET 239
             I++  + + G+     YDRFR+R++FP    +G ++ F GR    K    KY+N+ ET
Sbjct: 172 LDILQ-EVDVIGNYEGKLYDRFRDRVMFPFYDMQGHIVGFSGRIVTPKDNVGKYVNTGET 230

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LF KGK+++  + A   + K            F+ LVEG  DV+SL + G++NV+   G
Sbjct: 231 PLFTKGKHIFGLYQARKAIGKI----------GFVYLVEGQFDVMSLHKVGIENVIGGSG 280

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T+ Q++LL + +  +V+ +D D+ G++A+ K  +L    L  G +V  + L +  DP
Sbjct: 281 TAFTDDQIKLLLRFTDSVVMIYDSDNAGVKASLKNCEL---LLKAGAKVKCIRLPKDTDP 337

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D F +       EKL           +KR    R        ++    +   I  + D  
Sbjct: 338 DDFAKTNQGKTKEKLKELEESFP-KAFKRMILPRGCKDETIISDTLNSICRLIACVPDAA 396

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
           LR  Y + +       F   +       R  K+  +    K  +Q 
Sbjct: 397 LRLEYIKTVA----VDFSTTMGIVDDKVRKMKREIKDTLPKSQTQS 438


>gi|291279868|ref|YP_003496703.1| DNA primase [Deferribacter desulfuricans SSM1]
 gi|290754570|dbj|BAI80947.1| DNA primase [Deferribacter desulfuricans SSM1]
          Length = 573

 Score =  264 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 148/636 (23%), Positives = 273/636 (42%), Gaps = 67/636 (10%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M      I  LL  I I +LI +YVD  +   N     +   CPFH EKTPSF+ ++ K 
Sbjct: 1   MKISEGSISLLLDQINIVDLISEYVDLKKTGKN-----HRGLCPFHTEKTPSFYVSEEKS 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++CF C   G+ +SF+    G  F+++V  L+    + + + +       KI  DL   
Sbjct: 56  VFHCFGCGASGNAISFVMKYFGYDFVDAVNFLSEKYNISIEISESD----RKISLDLYEF 111

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            +       ++L   +   +  +L  R ++   I  F +GY        +     K + +
Sbjct: 112 HKDIMIAAKNNLITCKKNEVLEFLARRDLNDDLINEFDIGYLD---SLDKLSSILKKYDK 168

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + +  +GL  + D   +   + +NRL+FPI++ R +V+ F GR  +     KY+NSPET 
Sbjct: 169 DIVKSSGLFYEQDGFFSF--KLKNRLLFPIKNLREKVVGFSGRV-TDDSLPKYINSPETQ 225

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K K LYN      +L               + +VEGYMDV+ + Q G++NVVS +GT
Sbjct: 226 IFSKRKILYNLDKTKKHL---------SGEVKVLYVVEGYMDVIRMWQYGIKNVVSPMGT 276

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           ALTE  + LL + +  +VL FDGD+ G  AA +++D+    L        V L++GEDPD
Sbjct: 277 ALTEDHVSLLKRYADEVVLLFDGDEAGKNAAMRSLDV---FLKNSFIPFVVFLNKGEDPD 333

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           SF++ +GK  F K++     L +++ KR  +    N    + +    L++ +  IKD+ L
Sbjct: 334 SFLQKFGKEKFLKILDNKYDLFELIIKRMFKKSINNVN-LKTKYLKILQSKLVLIKDELL 392

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + I        Q +                               ++K   +K  
Sbjct: 393 KESYIEKISKIFGIDPQIFKKGVDFS--------------------TAKRILKRSENKIK 432

Query: 481 SLREAALLLTLI-NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            + E   + +L      ++ E   ++ +  + +  ++K++  +       K      +  
Sbjct: 433 YICEYDFISSLFGLAEDVIDELVHDMKEEFFFDENMKKIFKKIVEFL--NKNVSIHLLVD 490

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              +   GELL ++              +    D          ++  +    +++++ E
Sbjct: 491 ---DSEVGELLSEI-----------LLKDEFHDDYYNALLNKYKIHLNYLKKLKKEKQEE 536

Query: 600 KQIAQVTAKGEA--EKTAILISILHEVHIQIHQIES 633
            + AQ   +  A   +   +I    +   ++ +++S
Sbjct: 537 LKKAQDKPERMALVNEINQIIKKQKDFEKRLLEVQS 572


>gi|16752090|ref|NP_445456.1| DNA primase [Chlamydophila pneumoniae AR39]
 gi|7189832|gb|AAF38704.1| DNA primase, putative [Chlamydophila pneumoniae AR39]
          Length = 594

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 141/626 (22%), Positives = 250/626 (39%), Gaps = 57/626 (9%)

Query: 1   MN---YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           M    Y  + + +L   I I +++ +++   R         Y ACCPFH EKTPSF  N 
Sbjct: 1   MRTAMYTEESLDNLRHSIDIVDVLSEHIHLKRSGA-----TYKACCPFHTEKTPSFIVNP 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQT 115
           +   Y+CF C   GD + FL   LG SF E++  L+    V   L   D      + ++ 
Sbjct: 56  AGAHYHCFGCGAHGDAIGFLMQHLGYSFTEAILVLSKKFQVDLVLQPKDSGYTPPQGLKE 115

Query: 116 DLIRLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
           +L  +   A  FF + L +    +    YL  RG     I+ F LGY P+    L+    
Sbjct: 116 ELRHINSEAETFFRYCLYHLPEARHALQYLYHRGFSPDTIDRFHLGYGPEQSLFLQAMEE 175

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKY 233
           +K   E+              A        R+IFP+  + G  I F  R  L   +  KY
Sbjct: 176 RKISQEQLHTAGFFGNKWFLFAR-------RIIFPVHDALGHTIGFSARKFLENSQGGKY 228

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           +N+PET +F K + L+    +   + K  +          +ILVEG  D L +  +G   
Sbjct: 229 VNTPETPIFKKSRILFGLNFSRRRIAKEKK----------VILVEGQADCLQMIDSGFNC 278

Query: 294 VVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            V++ GTA TE  ++ L      ++ L FD D+ G +AA +  DL          V    
Sbjct: 279 TVAAQGTAFTEEHVKELSKLGVLKVFLLFDSDEAGNKAALRVGDLCQTAQ---MSVFVCK 335

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L +G DPDSF+   G +    L+ +S   +  L   +  +     P E+A L       I
Sbjct: 336 LPQGHDPDSFLMQRGSSGLIALLEQSQDYLTFLISEKMSSYPKFGPREKALLVEEAIRQI 395

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
            H     L Y + + +   +       ++  +       +N   +               
Sbjct: 396 KHWGSPILVYEHLKQLASLMMVPEDMVLSLANPQVTAEPQNIPIKQ-------------- 441

Query: 473 KGKLSKKPSLREAALLLTLI---NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE- 528
           K        + E  +L  ++   ++  IL           + + E +KL++F+ S + + 
Sbjct: 442 KVPKIHPHIVMETDILRCMLFCGSNTKILYTAQFYFVPEDFKHPECRKLFAFMISYYEKY 501

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
           +K    +E  Q L +    +LL +  R++    L +   ++      + +++      + 
Sbjct: 502 RKNVPFDEACQVLSDSQILQLLTK--RRLNTEALDTIFVQSLQKMADRRWREQC----KP 555

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKT 614
             L++  ++ + +I +   +   ++T
Sbjct: 556 LSLNQNIQDKKLEILEDYVQLRKDRT 581


>gi|50085933|ref|YP_047443.1| DNA primase [Acinetobacter sp. ADP1]
 gi|49531909|emb|CAG69621.1| DNA primase [Acinetobacter sp. ADP1]
          Length = 629

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 149/686 (21%), Positives = 267/686 (38%), Gaps = 119/686 (17%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+  I  +L    +  LIGQ V   +         Y  CCPFH EK+PSFH    KG
Sbjct: 1   MAIPQHTIDQILDRTDLVELIGQRVKLKKTGR-----TYSGCCPFHQEKSPSFHVYRDKG 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---- 116
           +Y+CF C   G+ + FL  + G +FI+ +Q L++ +GV LP  + + +K    +      
Sbjct: 56  YYHCFGCQANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKPE 115

Query: 117 -----------------LIRLIE-----VATDFF---HHSLKNARDKRLHYYLDERGIDS 151
                            +    E      A  +F         +         +    D 
Sbjct: 116 PKPVVNTEKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDL 175

Query: 152 HAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS------------- 198
                        +    +++ +Q+G S E I    L    ++                 
Sbjct: 176 LENVAQFYEKQLPNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAFPYDIEGLKQ 235

Query: 199 ------------YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK 246
                       +D  R R+IFPIR  +G+V+ FGGR L+     KY+NSP++ +FHK +
Sbjct: 236 VGLIRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQ 295

Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306
            LY  +       K              ++VEGYMDV++L Q GV   V++LGTA     
Sbjct: 296 LLYGLYEGRKLKAK------------DWLMVEGYMDVIALQQYGVYGAVATLGTASNADH 343

Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
           L  L+K + RI + FDGD  G +AA + +++ L  L  G  + F +L +  DPDS IR  
Sbjct: 344 LNTLFKQNSRITIAFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRRE 403

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYS 425
           G   F++L+ ++  L D ++   T+    +TP+ ++++   L+     +      RY  +
Sbjct: 404 GLEHFQRLLEQAPLLSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRYLLT 463

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           Q+ R++L            G GR W     H      + +                  E 
Sbjct: 464 QSFREKL------------GLGRKWTPQISHDASLSFNIQTKD---------------ED 496

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE--QKYFLPEEIHQRLCE 543
             +  L+ HP +    ++ L    + +   Q+L + + +       +    +E+      
Sbjct: 497 FAVALLMQHPYLYI-HFEALRA--FIDP--QQLLAQILAIIDRVFDELPDDQELATYYVL 551

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
               +   ++   +    + +        D           + +   L  +++ + +++ 
Sbjct: 552 GACNQFSHEIADIIERTDIQTLMNAPETAD----------KHAKEYALGLKEKYLRQKLK 601

Query: 604 QVTAKGEAEKTAILISILHEVHIQIH 629
              +     ++  L   L+E+  QI+
Sbjct: 602 APISL---IESRNLRQQLNELSKQIN 624


>gi|160902265|ref|YP_001567846.1| DNA primase [Petrotoga mobilis SJ95]
 gi|160359909|gb|ABX31523.1| DNA primase [Petrotoga mobilis SJ95]
          Length = 579

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 127/627 (20%), Positives = 263/627 (41%), Gaps = 61/627 (9%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           +  I ++   + I + +  Y+   +R  N     Y A CPFH E TPSF+       ++C
Sbjct: 9   KKVIDEIKNKVDIVDFVNSYLSLSKRGKN-----YTALCPFHAEDTPSFYIFPETQTFHC 63

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C   GD ++FL      SF+++++++A  AG+ L +      +KEK    +    E  
Sbjct: 64  FGCGAHGDVITFLEKYEQISFLDALKKIATYAGIELDIT-----QKEKPVEIIF--NEEV 116

Query: 125 TDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
           +  ++++L N + + ++  YL +R I    +E F+LG+A  S   +++ + +  F ++  
Sbjct: 117 SKLYNYNLLNLSSNHKVWQYLKKREITRELVEEFELGFATGS--EIQKVIEENLFDKDIA 174

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILF 242
              GLLI+G+      + F NRLI PIR++ G+++ F GR + +   + KYLN+PE   F
Sbjct: 175 KNTGLLINGEK-----EFFYNRLIIPIRNNDGELVGFAGRQIEEDTNAPKYLNTPENKFF 229

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K K LY +     +++           + F+ILVEGY DV+S+ +   +NVV  LG+A 
Sbjct: 230 KKSKILYGYHKNKKFIK----------ENDFVILVEGYFDVISMYKLDFKNVVGILGSAF 279

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T+     L K + +++  +D D+ G +A    ID +            V     +DPD  
Sbjct: 280 TKDHAVELLKATNKVITMYDMDESGQKATLSTIDALFAKD----FQIAVSKYPTKDPDEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            + +      +++  S    + +    +E    +      +    +       +D   R 
Sbjct: 336 TKKHDNKYIAEILKNSYKFHEFIVDYYSEKYDLSNEFALEKYLKEMSRWYKKFED-VGRI 394

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y Q+  + + +   K                        S    + +L   K  +    
Sbjct: 395 SYLQSFIENISKKTGKGTEYIQKILERTSALIPVSSASNESNSQTKDTLYVEKDIRYDIA 454

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           +  + L   I +P   +      ++  + +  L++ ++         +      + +   
Sbjct: 455 K--SYLYLWIKYPHYREILKNYFSEEDFSSQLLKEFFTL------TSQSSDIGFLLEN-S 505

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +   EL+ ++         W      N   +    ++++    R   ++ Q EE++K++
Sbjct: 506 SKELSELIVEV---------WKIEYFFNPERILSSLKESI----RRTKINEQIEELKKKL 552

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIH 629
            +     +  +   + S + +++ ++ 
Sbjct: 553 HETK---DLSEKTNITSQIIQLYSKLK 576


>gi|15618851|ref|NP_225137.1| DNA primase [Chlamydophila pneumoniae CWL029]
 gi|15836475|ref|NP_300999.1| DNA primase [Chlamydophila pneumoniae J138]
 gi|33242308|ref|NP_877249.1| DNA primase [Chlamydophila pneumoniae TW-183]
 gi|9910843|sp|Q9Z6W4|PRIM_CHLPN RecName: Full=DNA primase
 gi|4377266|gb|AAD19080.1| DNA Primase [Chlamydophila pneumoniae CWL029]
 gi|8979316|dbj|BAA99150.1| DNA primase [Chlamydophila pneumoniae J138]
 gi|33236819|gb|AAP98906.1| DNA primase [Chlamydophila pneumoniae TW-183]
          Length = 590

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 140/621 (22%), Positives = 249/621 (40%), Gaps = 54/621 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y  + + +L   I I +++ +++   R         Y ACCPFH EKTPSF  N +   Y
Sbjct: 2   YTEESLDNLRHSIDIVDVLSEHIHLKRSGA-----TYKACCPFHTEKTPSFIVNPAGAHY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120
           +CF C   GD + FL   LG SF E++  L+    V   L   D      + ++ +L  +
Sbjct: 57  HCFGCGAHGDAIGFLMQHLGYSFTEAILVLSKKFQVDLVLQPKDSGYTPPQGLKEELRHI 116

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  FF + L +    +    YL  RG     I+ F LGY P+    L+    +K   
Sbjct: 117 NSEAETFFRYCLYHLPEARHALQYLYHRGFSPDTIDRFHLGYGPEQSLFLQAMEERKISQ 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPE 238
           E+              A        R+IFP+  + G  I F  R  L   +  KY+N+PE
Sbjct: 177 EQLHTAGFFGNKWFLFAR-------RIIFPVHDALGHTIGFSARKFLENSQGGKYVNTPE 229

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K + L+    +   + K  +          +ILVEG  D L +  +G    V++ 
Sbjct: 230 TPIFKKSRILFGLNFSRRRIAKEKK----------VILVEGQADCLQMIDSGFNCTVAAQ 279

Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           GTA TE  ++ L      ++ L FD D+ G +AA +  DL          V    L +G 
Sbjct: 280 GTAFTEEHVKELSKLGVLKVFLLFDSDEAGNKAALRVGDLCQTAQ---MSVFVCKLPQGH 336

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF+   G +    L+ +S   +  L   +  +     P E+A L       I H   
Sbjct: 337 DPDSFLMQRGSSGLIALLEQSQDYLTFLISEKMSSYPKFGPREKALLVEEAIRQIKHWGS 396

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             L Y + + +   +       ++  +       +N   +               K    
Sbjct: 397 PILVYEHLKQLASLMMVPEDMVLSLANPQVTAEPQNIPIKQ--------------KVPKI 442

Query: 478 KKPSLREAALLLTLI---NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFL 533
               + E  +L  ++   ++  IL           + + E +KL++F+ S + + +K   
Sbjct: 443 HPHIVMETDILRCMLFCGSNTKILYTAQFYFVPEDFKHPECRKLFAFMISYYEKYRKNVP 502

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            +E  Q L +    +LL +  R++    L +   ++      + +++      +   L++
Sbjct: 503 FDEACQVLSDSQILQLLTK--RRLNTEALDTIFVQSLQKMADRRWREQC----KPLSLNQ 556

Query: 594 QKEEIEKQIAQVTAKGEAEKT 614
             ++ + +I +   +   ++T
Sbjct: 557 NIQDKKLEILEDYVQLRKDRT 577


>gi|89897993|ref|YP_515103.1| DNA primase [Chlamydophila felis Fe/C-56]
 gi|89331365|dbj|BAE80958.1| DNA primase [Chlamydophila felis Fe/C-56]
          Length = 596

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 136/584 (23%), Positives = 241/584 (41%), Gaps = 41/584 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y  + + +L  +I I  ++ +++   R         Y ACCPFH EKTPSF  N +  +Y
Sbjct: 2   YTEESLDNLRHNIDIVEVLSEHLHLKRSGA-----TYKACCPFHVEKTPSFIVNPTCAYY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIRL 120
           +CF C   GD +SFL   LG SF E+V  L+    V L   V D +       + +L ++
Sbjct: 57  HCFGCGAHGDAISFLMNHLGYSFSEAVLTLSKKFHVDLVVEVKDTQTSFPIGAKDELRQI 116

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A + F   L   A  +    YL  RG     I+ F LGYAP+    ++    +    
Sbjct: 117 NHEAENLFRFCLYQLAEGREALQYLYRRGFSPDTIDRFHLGYAPEQTLFVQAMREKNISE 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPE 238
           ++      +       +        R+IFP+  S G  I F  R  L      KY+N+PE
Sbjct: 177 KQLESAGFIGNKWFLFSR-------RIIFPVHDSLGHTIGFSSRKFLENTRGSKYVNTPE 229

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TI+F K + L+    +   + K  R          +ILVEG  D L +  +G    +++ 
Sbjct: 230 TIIFKKSRALFGLHLSRRRIAKEKR----------VILVEGQADCLQMIDSGFNCTLAAQ 279

Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           GT+ TE  ++ L      +  + FDGDD G++AA +  D+       G  V    L +GE
Sbjct: 280 GTSFTEDHVKELSKLGVLKAYVLFDGDDAGIKAAIRVGDMCQ---TVGIAVMVCRLPQGE 336

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF+R  G     +L+ +S   +  L   +       +P E+A +       I    +
Sbjct: 337 DPDSFLRHKGAGPLGELLDQSEDYLTFLISEKIRVYPNFSPREKALVIEETITQIKKWGN 396

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             + Y + + +   L  + +  +   +               K    ++    +++  + 
Sbjct: 397 PIVVYEHLKQLAS-LMMIPESMVFSLAKLESGITPATVLATSKAKLPKIHPDVIIETDVL 455

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP-EE 536
                    +L    ++ ++            + + E +KL+S L   + + +  LP +E
Sbjct: 456 -------RCMLFCKAHNTSLPYTAKNYFTPKDFKHPECRKLFSRLIEYYEKHQSNLPFDE 508

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               L ++   ELL  + R++    L +   ++      + +++
Sbjct: 509 ALSLLEDKVIIELL--IKRRMNTDCLETVFIQSLQKLADRQWKE 550


>gi|119953488|ref|YP_945697.1| DNA primase [Borrelia turicatae 91E135]
 gi|119862259|gb|AAX18027.1| DNA primase [Borrelia turicatae 91E135]
          Length = 591

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 129/639 (20%), Positives = 249/639 (38%), Gaps = 57/639 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y +  I  +   + I  LI + V   +  +      Y   CPFH E+TPSF    ++G
Sbjct: 1   MEYAK-VIDLIKQRVDIVALISERVRLVKSGS-----SYKGLCPFHAERTPSFSITPAQG 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV---PLPVVDPKIEKKEKIQ--T 115
            +YCF C   GD + FL  +    +  +V+ L +  G+    +        K +     +
Sbjct: 55  LFYCFGCRKGGDVIKFLMDIEKLDYNGAVKSLCSRIGIVYDDIKKTTVVKNKTQDKSIIS 114

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDS--HAIEMFKLGYAPDSRYSLREHL 173
            +  L       F   L N +    +                +  L +    +++    L
Sbjct: 115 KIYDLNAKLIKTFEFFLNNNQKVLNYILQMRGISKDVIDLFNIGYLRFDIPGKFNFYNFL 174

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             KG+S+E + ++GL          +     RLIFPIR  +G V+ FGGR L +    KY
Sbjct: 175 ISKGYSDEILSKSGLFSK---RKGIFSILSGRLIFPIRDFKGNVVGFGGRYLGRNNGPKY 231

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           +N  ET +F K + LY F+   + ++           S  +IL EGY+DVLS   AGV+ 
Sbjct: 232 INLSETEVFKKRELLYGFYEGFSVIK----------ESKSVILTEGYIDVLSFFTAGVKI 281

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            VS+LGT+ +     L+ + + +I++CFD D  GL A +KA  + L        V+ + +
Sbjct: 282 AVSTLGTSFSREHFALIKRYANKIIMCFDDDAAGLLATFKAYQICLPF---DIDVSVIRM 338

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP   ++  G    + +I +     + L ++ +     +   +   +     N I+
Sbjct: 339 KYGVDPADVLKNKGAFVLKDMINDGCDAFEYLLEKYSGKYDLSKTTDLNSMVGMFINLIS 398

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  R    + +  ++    +    ++                    +R   +S  +
Sbjct: 399 LSSTNTQRDLLLKKLESKMGIKLETLREDYYSMR----------------ERSAIASYKR 442

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
              S + +  E  LL+ L+          + ++D    + +++K++      F   + F 
Sbjct: 443 NAYSYEINTYERYLLVALLKDFNYFTIIRRNISDSDLYDVDVKKIFMCFEYLFENNESFS 502

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L +  +         +V    +     E +        +Q L   K+ ++ +R
Sbjct: 503 LLNLKELLKDNKYS------VSEVFFENMLRVEFEVDDE----MVKQILFAIKKRKVENR 552

Query: 594 QK--EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               +++ K    + AK +  +   L      + I +++
Sbjct: 553 ILVFKDMSKDNVSIDAKAQIRELMFLNMQRENLRIYLNE 591


>gi|118577332|ref|YP_899572.1| DNA primase [Pelobacter propionicus DSM 2379]
 gi|118504837|gb|ABL01319.1| DNA primase [Pelobacter propionicus DSM 2379]
          Length = 471

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 129/491 (26%), Positives = 212/491 (43%), Gaps = 33/491 (6%)

Query: 1   MNYPRDFIKDLLIHI--PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M  P D  K++L      I  LIG+ +   +  T      Y ACCPFH+EKTPSF  N S
Sbjct: 1   MRIPDDIKKEILDRAGQNIVQLIGEVIPLTKAGT-----TYKACCPFHNEKTPSFTVNPS 55

Query: 59  KGFYYCFS-CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117
           +G ++CF  C+  GD   F     G  F +++  LA   G+ +P  +    K+EK +  +
Sbjct: 56  RGTWHCFGQCNDGGDVAKFFMLRDGIKFPDALALLARRVGITIPQGET---KEEKERKAM 112

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  +  A  FF   L   R+     Y D R           +GYAP    +L ++L + G
Sbjct: 113 LHALAKAQYFFQQGLSENRNG-GRAYADSRLTPYEVE-RHGIGYAPKGGRALVDYLDKSG 170

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
                  +AGL I  + +    D F  R++FPIR  RG+VIAF GR   K +++KY+NSP
Sbjct: 171 VPFWAAEKAGL-IRREENGPYKDCFWGRVMFPIRDDRGRVIAFAGRRTDKIKTLKYVNSP 229

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E+ L+ K   LY    A+  +            +  + +VEGY D +++  AG+ N V++
Sbjct: 230 ESPLYKKEATLYGIDTAIQAI----------QETGEVYVVEGYFDAIAMISAGILNTVAT 279

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
            GTA T+    +L +   R+   FDGD  G +A  KA  L L        V   LL+  +
Sbjct: 280 CGTAFTKEHAAVLRRYCTRVNFMFDGDAAGKKALQKATLLAL---KEEFTVTAYLLTEDQ 336

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF +        + +     L +   +    ++  +  +       ++   I  ++ 
Sbjct: 337 DPDSFFKSGESFNEIRSMTGLDYLKESGAEMSPIHKKLHRLERLERGLFYMAEKIPEVRG 396

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              +    + +           +                R Q+     +   + ++   +
Sbjct: 397 MIAKSGNLEEL------FSPDLLPAIHDVINTPPPPFSPRVQRMIETLVRVKASLELGNT 450

Query: 478 KKPSLREAALL 488
            +P++R A LL
Sbjct: 451 AEPTVRSAMLL 461


>gi|149927881|ref|ZP_01916131.1| DNA primase [Limnobacter sp. MED105]
 gi|149823320|gb|EDM82553.1| DNA primase [Limnobacter sp. MED105]
          Length = 282

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 90/268 (33%), Positives = 136/268 (50%), Gaps = 12/268 (4%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL  + I++++G+YV       N         CPFH+EK+PSF  + SK FY
Sbjct: 2   IPQSFIDDLLYRLDIADVVGRYVQLKAAGANLQ-----GLCPFHNEKSPSFTVSPSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIRL 120
           +CF C   G+ + F+   LG +F E+V+ LA   G+ +P         +    + +L+ L
Sbjct: 57  HCFGCGAHGNAVGFVMEHLGLTFPEAVENLAGNLGIDVPYEKGMDVPAEVRSEREELVEL 116

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A +++   LK +       YL  RG+       + +GYAPD+  +L   +     + 
Sbjct: 117 LTRAANYYKAQLKKS--PVAIDYLKNRGLTGQVAARYGMGYAPDAYQNLESVIENYASNT 174

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           +  +     I   +S   YD FR R++FPIR+++GQVI FGGR L   E  KYLNSPET 
Sbjct: 175 QLDLAGLTKIS--DSNRRYDAFRGRIMFPIRNAKGQVIGFGGRVL-GDEKPKYLNSPETP 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRR 268
           +F KG  +Y  F A   + K     V  
Sbjct: 232 VFSKGHEVYGLFEARQAIHKMGYALVTE 259


>gi|269302732|gb|ACZ32832.1| DNA primase [Chlamydophila pneumoniae LPCoLN]
          Length = 590

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 140/621 (22%), Positives = 249/621 (40%), Gaps = 54/621 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y  + + +L   I I +++ +++   R         Y ACCPFH EKTPSF  N +   Y
Sbjct: 2   YTEESLDNLRHSIDIVDVLSEHIHLKRSGA-----TYKACCPFHTEKTPSFIVNPAGAHY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120
           +CF C   GD + FL   LG SF E++  L+    V   L   D      + ++ +L  +
Sbjct: 57  HCFGCGAHGDAIGFLMQHLGYSFTEAILVLSKKFQVDLVLQPKDSGYTPPQGLKEELRHI 116

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A  FF + L +    +    YL  RG     I+ F LGY P+    L+    +K   
Sbjct: 117 NSEAETFFRYCLYHLPEARHALQYLYHRGFSPDTIDRFHLGYGPEQSLFLQAMEERKISQ 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPE 238
           E+              A        R+IFP+  + G  I F  R  L   +  KY+N+PE
Sbjct: 177 EQLHTAGFFGNKWFLFAR-------RIIFPVHDALGHTIGFSARKFLENSQGGKYVNTPE 229

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F K + L+    +   + K  +          +ILVEG  D L +  +G    V++ 
Sbjct: 230 TPIFKKSRILFGLNFSRRRIAKEKK----------VILVEGQADCLQMIDSGFNCTVAAQ 279

Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           GTA TE  ++ L      ++ L FD D+ G +AA +  DL          V    L +G 
Sbjct: 280 GTAFTEEHVKELSKLGVLKVFLLFDSDEAGNKAALRVGDLCQTAQ---MSVFVCKLPQGH 336

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF+   G +    L+ +S   +  L   +  +     P E+A L       I H   
Sbjct: 337 DPDSFLMQRGSSGLIALLEQSQDYLTFLISEKMSSYPKFGPREKALLVEEAIRQIKHWGS 396

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             L Y + + +   +       ++  +       +N   +               K    
Sbjct: 397 PILVYEHLKQLASLMMVPEDMVLSLANPQVTAEPQNILIKQ--------------KVPKI 442

Query: 478 KKPSLREAALLLTLI---NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFL 533
               + E  +L  ++   ++  IL           + + E +KL++F+ S + + +K   
Sbjct: 443 HPHIVMETDILRCMLFCGSNTKILYTAQFYFVPEDFKHPECRKLFAFMISYYEKYRKNVP 502

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            +E  Q L +    +LL +  R++    L +   ++      + +++      +   L++
Sbjct: 503 FDEACQVLSDSQILQLLTK--RRLNTEALDTIFVQSLQKMADRRWREQC----KPLSLNQ 556

Query: 594 QKEEIEKQIAQVTAKGEAEKT 614
             ++ + +I +   +   ++T
Sbjct: 557 NIQDKKLEILEDYVQLRKDRT 577


>gi|62185402|ref|YP_220187.1| DNA primase [Chlamydophila abortus S26/3]
 gi|62148469|emb|CAH64239.1| putative DNA primase [Chlamydophila abortus S26/3]
          Length = 591

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 141/609 (23%), Positives = 246/609 (40%), Gaps = 55/609 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y  + + +L   I I  ++ +++   R       G Y ACCPFH EKTPSF  N +  +Y
Sbjct: 2   YTEESLDNLRHSIDIIEVLSEHLHLKRSG-----GTYKACCPFHVEKTPSFIVNPTGAYY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120
           +CF C   GD +SFL   LG SF E+V  L+    V   + + D +       + +L ++
Sbjct: 57  HCFGCGAHGDAISFLMNHLGYSFSEAVLTLSKKFHVDLVIKMKDVQSPFATGAKDELRQI 116

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A   F   L   A  +    YL  RG     +  F LGYAP+    +     +    
Sbjct: 117 NAEAEKLFRFCLYQLAEGREALQYLYRRGFSPDTVGCFHLGYAPEQTLFVHAMREKNISE 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPE 238
           ++      +       +        R+IFPI  S G  I F  R  L      KY+N+PE
Sbjct: 177 KQLEDAGFIGNKWFLFSR-------RIIFPIHDSLGHTIGFSSRKFLENTRGSKYVNTPE 229

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TI+F K + L+    +   + K  R          +ILVEG +D L +  +G    +++ 
Sbjct: 230 TIIFKKSRALFGLHLSRRRIAKEKR----------VILVEGQVDCLQMIDSGFNCTLAAQ 279

Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           GT+ TE  ++ L      +  L FDGDD G++AA +  D+       G       L +GE
Sbjct: 280 GTSFTEDHVKELSKLGVLKAYLLFDGDDAGIKAAVRVGDMCQM---AGIAAMVCRLPQGE 336

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF+   G     +L+ +S   +  L  ++       +P E+A +       I    +
Sbjct: 337 DPDSFLMHKGARPLGELLDQSEDYLTFLISQKMRVYPNFSPREKALVIEETITQIKKWGN 396

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             + Y + + +   L  + +  +   +               K    ++    ++     
Sbjct: 397 PIVVYEHLKQLAS-LMMIPESMVFSLAKLESGMTPAKSSLVNKEKLPKIHSDVII----- 450

Query: 478 KKPSLREAALLLTLINHPA----ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                 E  +L  ++        I          + + + E +KL+S L + + + +  L
Sbjct: 451 ------ETDVLRCMLFCKTHQTCIPHTAKHYFTAMDFKHPECRKLFSHLIAYYEKHQSNL 504

Query: 534 P-EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
           P +E    L +R   ELL  + R++    L +   ++      + +++      +   LS
Sbjct: 505 PFDEALSLLEDRVIIELL--IKRRMNTDCLETVFVQSLQKLADRQWKE------QCHPLS 556

Query: 593 RQKEEIEKQ 601
           RQ +   ++
Sbjct: 557 RQSKSAHEE 565


>gi|325268617|ref|ZP_08135247.1| hypothetical protein HMPREF9141_0456 [Prevotella multiformis DSM
           16608]
 gi|324989145|gb|EGC21098.1| hypothetical protein HMPREF9141_0456 [Prevotella multiformis DSM
           16608]
          Length = 1324

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 127/461 (27%), Positives = 212/461 (45%), Gaps = 28/461 (6%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            ++FI+ +   + I N+I  +    +   N     Y   CPFHD+ +PS   + S+  Y+
Sbjct: 3   DKNFIEKVKSALNIVNVIETFTHLHKTGAN-----YKGVCPFHDDHSPSMVVSPSRQTYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLI 121
           CF C   GD +SF+   L  SF+E+++  A  AG+  P   + P+ E   K +      I
Sbjct: 58  CFVCGASGDVISFVQHHLNLSFMEALRWCAVQAGIEFPAKELSPEEEAAYKKKEAQRIAI 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           + A  FF  +L                +   A+  F +GYAP    +L E  +       
Sbjct: 118 DAAAKFFQKNLAQ---AESFLASRGYSLSDKALTDFGVGYAPMGNLALSELSK---AGYS 171

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
           + +   + + G++    YDRFR+RL+FP    +G VI F GR ++  E   KY+N+ ET 
Sbjct: 172 QELLQEVDVLGNSEGRLYDRFRDRLMFPFYDMQGHVIGFSGRIVTPRERTGKYVNTGETP 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KGK+++  + A   + K            F  LVEG  DV+SL + GV+NVV   GT
Sbjct: 232 LFTKGKHIFGLYQARKSIGK----------EGFAYLVEGQFDVMSLHKVGVENVVGGSGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T+ Q++LL + +  IV+ +D D  G++A+ K  +L    L  G +V  + L +G DPD
Sbjct: 282 AFTDDQVKLLLRFTDDIVMIYDADAAGIKASLKNCEL---LLKAGAKVRCIRLEKGMDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            F +  G    +KL   + P     +KR    R         +    + + +  ++D  L
Sbjct: 339 EFAKANGSLTAKKLKGLTEPFP-KAFKRMLLPRGCKDETVITDCLNSICSLVACVQDSVL 397

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
           R  Y ++I +  +        +        K+++   + + 
Sbjct: 398 RLEYVKSIAEDFRSRIGIIDNKVRSIRTRLKESSVQTNTQT 438


>gi|39939113|ref|NP_950879.1| DNA primase [Onion yellows phytoplasma OY-M]
 gi|39722222|dbj|BAD04712.1| DNA primase [Onion yellows phytoplasma OY-M]
          Length = 604

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 137/637 (21%), Positives = 261/637 (40%), Gaps = 45/637 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I  +   +PI +L+ ++V   +   N     Y   CPFHDEKTPSF  +  + 
Sbjct: 1   MQDNKQLIDQINEKMPILDLVQEFVQLKKSGKN-----YMGLCPFHDEKTPSFSVSPERN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              C SC   G+ + F  ++      +++  LA   G+         ++          +
Sbjct: 56  IGVCMSCKKGGNPVFFYKSIKNIPLNQAIFELATRLGIA----TSLPQQGTHQYQKFYNI 111

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           ++ A DF+ H LK   +K++  YL++RG D+  I+ FKLGYAP + +  R  +    F  
Sbjct: 112 MQEAADFYSHQLK--HNKQVLNYLEKRGFDNDIIKHFKLGYAPKASHLSRYLMEGTKFDP 169

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + + +  L+   D +   YD F+NRLIFPI +  GQ++AF  R+L   +  KYLNSPETI
Sbjct: 170 DDLKKLSLINQDDKTGNFYDFFKNRLIFPITNKSGQIVAFSSRSL-DDQMPKYLNSPETI 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F KG+ LY ++     ++K  +          +IL EG+ DV++  +A  +NVV+++GT
Sbjct: 229 IFKKGETLYQYYETQAEIRKKQK----------VILHEGFFDVMASFKAQFKNVVATMGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
            LT    +LL K++ +I++ +DGD  G  A    +++         +V  V      DPD
Sbjct: 279 NLTLDHAKLLKKITDKIIIAYDGDKAGKTAT---LEIGTFLQKNHFKVQIVDFPNNLDPD 335

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +I+  G   ++ L+      +      + +                    +      ++
Sbjct: 336 EYIKTEGPEKYQHLL---TDNLKDFLALKVDLICQQMDSYNKAQTKKELQELFQSSSFEI 392

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + +  +  QL     ++ S           H  Q+    +      +  +L    
Sbjct: 393 KMLYQEYL-QKTYQLTVNLNSQVSINKAPKPPYIAHTKQQLNLTKFDIKIEIIIELLLN- 450

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL---PEEI 537
               A    T   +P       +      +D+ +   L +++ + + +         EEI
Sbjct: 451 ----ADFFKT--QNPKTFATIKKTPG---FDDLQCSCLLNYIKNYYKKNPKQTCIPWEEI 501

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                +    +LL  +++            +     +   Y + L +  +     ++  E
Sbjct: 502 KNTTFKENIDDLLTSIEKHHFFKMEKRPLLQDKEGKIFNNYIKELEIRDKIEQKQQKINE 561

Query: 598 IEKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +  +   I         +K   L     ++  Q+ ++
Sbjct: 562 LNDKLLPIDNTEKNKLQKKKDKLKKERRQLQKQLSEL 598


>gi|325272672|ref|ZP_08139026.1| DNA primase [Pseudomonas sp. TJI-51]
 gi|324102183|gb|EGB99675.1| DNA primase [Pseudomonas sp. TJI-51]
          Length = 427

 Score =  259 bits (662), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 120/424 (28%), Positives = 198/424 (46%), Gaps = 26/424 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            Y  +F+  +     +  LI + +   +   N     + ACCPFH EKTPSF  +  + F
Sbjct: 6   RYSDEFLDRVRQAADLVGLISRDITLKKSGKN-----FSACCPFHKEKTPSFSVSPERNF 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL---I 118
           Y C+ C  KGD ++++       F ++V  +A  +G+ LP         +    +L    
Sbjct: 61  YRCYGCDAKGDAITWMMDHHHLPFPDAVAAVAEFSGIQLPEPCQDTAADQARNAELAAMY 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           R ++ A   +   ++    K   Y   +RG+ S  I  + LG            L  K  
Sbjct: 121 RALKDAQTLYAGGIQRN-AKSYGYLTQQRGLSSETIGKYGLGTVGTG----IADLLLKRH 175

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL--SKGESVKYLNS 236
             + +I+ GL +        +DRFR+R++ PI    G ++ F GR++  S   + KY+NS
Sbjct: 176 DRQILIDCGL-VCEAEDGRLFDRFRSRIMIPIHDHGGALVGFAGRSVIESPDRTPKYINS 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET LFHKG+ LY F  A  +++          +    ++VEG+ DVLSL QAG    V+
Sbjct: 235 PETKLFHKGEELYAFNIARQFIR----------ADRHAVVVEGFFDVLSLHQAGDSRAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            +GT+LT  Q+R L++ +  +   FDGD  G +AA ++  +VL  +  G    F+ L  G
Sbjct: 285 PMGTSLTNVQMRRLFQNADTVTFAFDGDKAGRKAALRSSAVVLEEMCDGKNAQFLFLPEG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPDS +R  G   + +++ ++ PL   L            P+ + +     +  I  I+
Sbjct: 345 TDPDSVLRENGLEYWIEMLNQAQPLSRFLTDFVKHRLDIEIPESQVKAAERGRAVIARIR 404

Query: 417 DQKL 420
           D  L
Sbjct: 405 DAAL 408


>gi|134287889|ref|YP_001110054.1| DNA primase [Burkholderia vietnamiensis G4]
 gi|134132539|gb|ABO60522.1| DNA primase [Burkholderia vietnamiensis G4]
          Length = 426

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 127/424 (29%), Positives = 202/424 (47%), Gaps = 26/424 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            +  +F++ +     +  LI + V   R        D+ ACCPFH+EKTPSF  +  K  
Sbjct: 6   RFSDEFLERIRGETDLPALIERDVKLKRAG-----QDFVACCPFHEEKTPSFRVSADKNT 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           Y C+ C  +GD + ++      SF ++V  LA ++G+PLPV +   ++ +  +     L 
Sbjct: 61  YRCWGCGARGDAIEWMRNKHHLSFQDAVVHLAGVSGIPLPVEERDSDEDKAQRKRLAGLY 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + ++ A   F   L  +   R  Y   +RG+ +  IE F LG        L      +  
Sbjct: 121 QALKEAARVFSRGLAKSPAARA-YLEQKRGLSAETIERFGLGVVAKGVVELLGGSTSREA 179

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL--SKGESVKYLNS 236
                + A       +    YDRFR+R++FPI +  G ++ F GR++     ++ KY+N 
Sbjct: 180 LLGSGLAAQ-----RDDGEIYDRFRHRIMFPIHNESGNLVGFAGRSMIEKPDKTPKYVNC 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +FHKG+ LY    A   ++          S    ++VEGY DV+SL QAG +  V+
Sbjct: 235 PETEIFHKGRELYALHLAKPAIR----------SGRVAVIVEGYFDVISLHQAGDERAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            +GTALT  Q+R L   +  IV  FDGD  G +AA  A  ++L  +  G    F+ L  G
Sbjct: 285 PMGTALTNLQVRRLLVHADTIVFAFDGDAAGRKAALGAAAVLLDEMKDGKTARFLFLPEG 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDSF+R +G  A+     ++ PL   L          + P+ + +     K  +  I+
Sbjct: 345 EDPDSFVRAHGLEAWHAATEQAAPLSAFLADYVAHGLDRDVPESQVKAAEKAKAILARIQ 404

Query: 417 DQKL 420
             +L
Sbjct: 405 HAEL 408


>gi|150020922|ref|YP_001306276.1| DNA primase [Thermosipho melanesiensis BI429]
 gi|149793443|gb|ABR30891.1| DNA primase [Thermosipho melanesiensis BI429]
          Length = 530

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 146/608 (24%), Positives = 253/608 (41%), Gaps = 96/608 (15%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           +P+  I+++   I I   + +YV   +   N     Y   CPFH E TPSF+ N S   Y
Sbjct: 2   FPKQVIEEIKSKIDIVEFVSRYVSLQKVGNN-----YRGLCPFHTETTPSFYVNPSFKTY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + FL  +   SF E+V++LA   G+ +        K    Q    RL E
Sbjct: 57  HCFGCGASGDVIKFLEEIENISFSEAVKKLAKEVGIKV------DVKVSSFQQLYYRLYE 110

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           +  + +   L+         YL +R   +  I  ++ G++P +              ++ 
Sbjct: 111 LIHEEYKKHLQKN--SIAVEYLQKRSFTAEEILKYEFGFSPLNS----------KIPQKV 158

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
               G+ I      ++ D F  RLI PI+   G++IAFGGR L +G+  KYLNS ET  F
Sbjct: 159 AENLGIKILKKFGFSTKDLFEGRLIIPIKDENGRIIAFGGRLLGEGQP-KYLNSFETDFF 217

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K K L+    A + ++           + F I+ EGY D L+  +A + N V++LGTA 
Sbjct: 218 KKSKTLFLLDRAKDQIK----------IADFAIICEGYFDALAFHRADITNAVATLGTAF 267

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T++    L K++  +VL FD D  GL+AA ++I +    ++ G  V     S  +DPD  
Sbjct: 268 TKFHAFKLKKITSNVVLSFDTDAAGLKAALQSIKI---LVLMGFNVMVANKSAEKDPDEI 324

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            R  GK      I E++P    +    ++  +F  P+        +KN  N  K+   R 
Sbjct: 325 YRTNGKEGLYNFIKEAIPAEKFIPIALSKKYNFENPNAIQLFLKEIKNWENLFKNFPKRL 384

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              Q++   +                                 L  + +VK        +
Sbjct: 385 EIFQSVVKEIS-----------------------------GSSLSTTKIVKKSNFSLDDV 415

Query: 483 REAALLLTLINHPAI------------LQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
               ++  LIN+P I              E  + L +  ++N   +KL  ++     + K
Sbjct: 416 ----IIYILINYPEIDLEIDPKILNNRSLEILKHLKNFSFENLS-KKLQEYIKEVLEKMK 470

Query: 531 YF-----LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
           +        EEI +++ E+   + L+++D  ++++         +  + R      + L 
Sbjct: 471 HVEINEEYIEEIKKKIQEKSLEKRLEEIDEYIKNS--------KDPSEKRLLLNTRIELV 522

Query: 586 KRFRLLSR 593
           ++ + + R
Sbjct: 523 RKLKNIRR 530


>gi|322379303|ref|ZP_08053684.1| DNA primase [Helicobacter suis HS1]
 gi|322379959|ref|ZP_08054235.1| DNA primase [Helicobacter suis HS5]
 gi|321147611|gb|EFX42235.1| DNA primase [Helicobacter suis HS5]
 gi|321148274|gb|EFX42793.1| DNA primase [Helicobacter suis HS1]
          Length = 580

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 142/602 (23%), Positives = 247/602 (41%), Gaps = 67/602 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ ++ L     I  ++  Y+D  R  +N     Y A CPFHDEKTPSF  N S+  +
Sbjct: 33  ISQESLEQLKQVADIVEVVQSYIDLKRVGSN-----YRAICPFHDEKTPSFMINPSRNSF 87

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL--IRL 120
            C+ C   G+ ++F+       FI +VQ+LA +  +PL           + +  L    L
Sbjct: 88  KCYGCSKAGNAITFVMEYEKLDFISAVQKLAHMFNLPLQYTT-------EQKQTLPSTDL 140

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E     +   LK      +  YL +RG+   +I+ F LG+          +  +     
Sbjct: 141 LEKIAQCYQIQLKKH--PLVLDYLKQRGLKEESIKAFNLGFCAPQSVLDFINQEKLDRQA 198

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPET 239
                  L + G+    S+ R + RLIFPI +  G+++ FGGR L     + KY+NSP+T
Sbjct: 199 LL----ELGVLGEEDNKSFVRLKQRLIFPIHNPNGKMVGFGGRILQDNSGAAKYINSPQT 254

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           +LF+K K LY +F A   + K          +  IIL EGY+DV+ L QAG +  V++LG
Sbjct: 255 VLFNKSKLLYGYFQAREAIFK----------TKQIILTEGYLDVILLQQAGFKTAVATLG 304

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE  + +L +  P ++L +DGD+ G  AA +A  ++   L  G     VLL+   DP
Sbjct: 305 TALTETHIPILNRGDPSVILLYDGDEAGYLAALRASKILSLELKRG---GVVLLNNALDP 361

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              I        + L+ + +P ++ + K   +  S +   ++ +     +  ++ +  Q 
Sbjct: 362 ADMITQGKSAELKALLQKPIPFIEFVLKGLVKPYSLSDALQKQKAFKEAQTFLHSLP-QV 420

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           L+  Y       L+        + +   +        ++                     
Sbjct: 421 LQEEYRPMAASLLKLPRNALTLKKNPLPQMQAAERLIKNP-------------------- 460

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEI 537
               E  L+  +  HP +L +    +    +++   E   L         E    L  ++
Sbjct: 461 ---LEEILIKYMALHPELLTQAKNYIHPETFEHCAQEFNTLC-----LGEENVQILNIKL 512

Query: 538 HQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             RL      F +  K                E N ++     Q+ L +  ++R   +Q 
Sbjct: 513 DNRLPTLSENFEQDFKAQLLLFIKRHCQRRIEETNHLNKELNPQERLEILVKWRTKLQQI 572

Query: 596 EE 597
            +
Sbjct: 573 NK 574


>gi|299142753|ref|ZP_07035882.1| DNA primase [Prevotella oris C735]
 gi|298575782|gb|EFI47659.1| DNA primase [Prevotella oris C735]
          Length = 1319

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 122/462 (26%), Positives = 205/462 (44%), Gaps = 32/462 (6%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            + FI+ +   + I N++  +    +   N     Y   CPFHD+ TPS   + S+  Y+
Sbjct: 3   DKLFIEKVKSALNIVNVVESFTHLHKAGVN-----YKGVCPFHDDHTPSMVVSPSRQTYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLI 121
           CF C   GD ++F+   L  SFIE+++  A +AG+  P   + P+ E K K +      I
Sbjct: 58  CFVCGASGDVIAFVQHHLNLSFIEALRWCATVAGLEFPQKEMSPEEEAKYKQKEAQRIAI 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E A  FF  +L                +D  A+  F +GYAP    ++          + 
Sbjct: 118 EAAAKFFQKNLSQ---AESFLNNRGYKLDDKALSDFGVGYAPVGNVAMNTLTAAGYSLDR 174

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240
                 + + G      YDRFR+R++FP    +G +I F GR ++  E V KY+N+ ET 
Sbjct: 175 LKE---VDVVGSTEGRFYDRFRDRVMFPFYDMQGHIIGFSGRIITPREGVGKYVNTGETP 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KGK+++  + A   + K            +  LVEG  DV+SL +  V++V+   GT
Sbjct: 232 LFTKGKHIFGLYQARKAIGKK----------GYAYLVEGQFDVMSLHKVDVEHVIGGSGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T+ Q++LL + +  IV+ +D D  G++A+ K  +L    L  G +V  + L +G DPD
Sbjct: 282 AFTDDQIKLLLRFTDSIVMVYDADAAGVKASLKNCEL---LLKAGAKVKCIRLPKGTDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            F +  G  A ++ + E         KR             A+    + + +  ++D  L
Sbjct: 339 EFAKANG-EATQEKLKELTEPFPKALKRMMIPHGCKDETVIADCLNTICSLVACVQDAAL 397

Query: 421 RYYYSQAIR----DRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           R  Y ++I      ++  +  K     +       +      
Sbjct: 398 RLEYIKSIAVDFKSKIGIIDDKVRGLRAKVKEALPQTKTQSG 439


>gi|260890618|ref|ZP_05901881.1| DNA primase [Leptotrichia hofstadii F0254]
 gi|260859663|gb|EEX74163.1| DNA primase [Leptotrichia hofstadii F0254]
          Length = 607

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 155/634 (24%), Positives = 279/634 (44%), Gaps = 49/634 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y    I+ L+ ++ I  +IG+YV+  +  +     DY    PF DEKTPSF  +  K 
Sbjct: 1   MIYSEKEIQKLIDNLDIVQVIGEYVNLKKAGS-----DYKGLSPFKDEKTPSFTVSPVKN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------DPKIEKKEKIQ 114
            +  FS  + G+ +SF   +    F+++V+ L+    +PL         D +IE+K+ + 
Sbjct: 56  IFKDFSTQIGGNVISFYMKINDIGFLQAVEELSRKYNIPLKKSREYRTIDQEIERKKAVN 115

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            +   ++  A  FF  ++   +      Y+ ER      I  F +G+AP  R  L +HL 
Sbjct: 116 REYYEIMNEAQIFFRENI--EKYSEALEYMKERDFSLEEIRRFGIGFAPSFRDDLFQHLV 173

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKY 233
           +K F EEKI+  GL      +   YD FRNR+IFPI +   Q++ FGGR + K  +  KY
Sbjct: 174 KKEFPEEKIMSLGLAKRN-ETGEIYDSFRNRIIFPIYNVNAQIVGFGGRIIEKNTNLPKY 232

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           LNSP++ +F KG  L+        ++K            F +L+EGY+DVL+  + G ++
Sbjct: 233 LNSPDSPIFKKGNELFGIKHQGENIRKK----------GFAMLMEGYLDVLTAQKNGFES 282

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V+SLGTA TE Q +LL K + +I++ +D D+ G  A  KA  ++  +      +  V+ 
Sbjct: 283 AVASLGTAFTEEQAQLLKKYTDKILISYDNDEAGKNAIIKAGYILKKYDFDVKCL--VMD 340

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +DPD F+R  GK AF +++ +S  + D L K  +++   N    + +    LK   +
Sbjct: 341 GNEKDPDEFLRKNGKKAFIEVVKKSEEIFDFLTKEASKDLDLNDISGKRKFIERLKPFFS 400

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           ++     +  Y Q +    +        E     +   +  + +  +    +       K
Sbjct: 401 NVTSNLNKNLYLQRLSANFEIDEFILAEELKNLSKKTSEGKKRKSYENQKVQYK-----K 455

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K      L E  L+  L  + +  ++  + L+   + +    +L   L +   +     
Sbjct: 456 LKKDLYIELEEQTLMYILEFYRSEKEKCMELLSK-GFSHPLFNELIEKLKAVEFDIMQLE 514

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY-KRFRLLS 592
             +I          E++ +L              + +I D +  +++  + + +R     
Sbjct: 515 KIDI-----SEENREIITKLK----------LRADNDIKDKKIYFREIYSGWFEREIDEE 559

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           RQK E E    +     +       I+ + E+  
Sbjct: 560 RQKTEEENDRIKKIELKKLLSKLKNINKISEIEK 593


>gi|307565407|ref|ZP_07627896.1| DNA primase [Prevotella amnii CRIS 21A-A]
 gi|307345857|gb|EFN91205.1| DNA primase [Prevotella amnii CRIS 21A-A]
          Length = 1319

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 123/462 (26%), Positives = 205/462 (44%), Gaps = 32/462 (6%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            + FI+ +   + I N++  +    +   N     Y   CPFHD+ TPS   + S+  Y+
Sbjct: 3   DKLFIEKVKSALNIVNVVESFTHLHKAGVN-----YKGVCPFHDDHTPSMVVSPSRQTYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLI 121
           CF C   GD +SF+   L  SFIE+++  A +AG+  P   + P+ E K K +      I
Sbjct: 58  CFVCGASGDVISFVQHHLNLSFIEALRWCATLAGLEFPQKEMSPEEEAKYKQKEAQRIAI 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E A  FF  +L                +D+ A+  F +GYAP    ++          + 
Sbjct: 118 EAAAKFFQKNLSQ---AESFLNKRGYKLDNKALSDFGVGYAPVGNVAMNTLTTAGYSLDR 174

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETI 240
                 + + G      YDRFR+R++FP    +G +I F GR ++  E   KY+N+ ET 
Sbjct: 175 LKE---VDVVGSTEGRFYDRFRDRVMFPFYDMQGHIIGFSGRIVTPREGLGKYVNTGETP 231

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF KGK+++  + A   + K            +  LVEG  DV+SL + GV++V+   GT
Sbjct: 232 LFTKGKHIFGLYQARKSIGKK----------GYAYLVEGQFDVMSLHKVGVEHVIGGSGT 281

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A T+ Q++LL + +  IV+ +D D  G++A+ K  +L    L  G +V  + L +G DPD
Sbjct: 282 AFTDDQIKLLLRFTDSIVMVYDADAAGVKASLKNCEL---LLKAGAKVKCIRLPKGTDPD 338

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            F +  G  A +  + E         KR             A+    + + +  ++D  L
Sbjct: 339 EFAKANG-EATQDKLKELTEPFPKALKRMMILHGCKDETVIADCLNTICSLVACVQDAAL 397

Query: 421 RYYYSQAIR----DRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           R  Y ++I      ++  +  K     +       +      
Sbjct: 398 RLEYIKSIAVDFKSKIGIIDDKVRGLRAKVKEALPQTKTQSG 439


>gi|167750935|ref|ZP_02423062.1| hypothetical protein EUBSIR_01920 [Eubacterium siraeum DSM 15702]
 gi|167656114|gb|EDS00244.1| hypothetical protein EUBSIR_01920 [Eubacterium siraeum DSM 15702]
          Length = 535

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 120/498 (24%), Positives = 213/498 (42%), Gaps = 20/498 (4%)

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
              +YCF C   GD ++F+       ++ESV+ LA  AG+ +P  +     K   +T   
Sbjct: 3   TQSFYCFGCGAAGDVINFIRLYEHLDYMESVKFLAQRAGIAMPDEEGDNGIK--RRTRAY 60

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            +   A  FFH  L +   K    YL  RG+  H I  + LGYAPD+  SL++H+   G+
Sbjct: 61  EMNREAGRFFHKYLYSPAGKEGLDYLYGRGLTDHTIRTYGLGYAPDTWDSLKKHMNSLGY 120

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S+ ++ EA LL     S   +D F+ R++FP    RG ++ F GR +   ++ KYLN+  
Sbjct: 121 SDSEMEEASLLSKSSKSGNYFDFFKYRVMFPFIDVRGNIVGFSGRVIGGDDNRKYLNTKA 180

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +++K   LY+   A N  +            S +I+ EG +DV+S+ QAG +N V++ 
Sbjct: 181 TAVYNKSTFLYSLNHAKNAGK------------SVLIMCEGNLDVISMYQAGFKNAVATC 228

Query: 299 GTALTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           GTA+T+   R +      +++L +D D  G +A  +A+++       G   N + +   +
Sbjct: 229 GTAITDSHARNIANLGFKKVILAYDSDAAGQKATARAMNI---LDKVGISANVLTMQGAK 285

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPD +I+ +GK AF+ LI  S   +D   K+       + P  ++E        I +I  
Sbjct: 286 DPDEYIKKFGKEAFQLLIDGSQSGMDYELKKIRSETDLSAPGGKSEYLKKAVGFIANINS 345

Query: 418 QKLRYYYSQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
              R  Y   I     + +             R   +   +R               +  
Sbjct: 346 PIDRAVYISTIAQECDVNRANVDIAVNQIIAKRNKTREKDNRRAILNGSVNRDKINPEAS 405

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                +  E  ++  L + P  L++   +++   +     ++L+  L +           
Sbjct: 406 RYPAETQAERGIIAYLFHSPDALKKITDKISSDDFVTEFNKRLFIDLTAMISCGLSNDVS 465

Query: 536 EIHQRLCERGFGELLKQL 553
            +  R        + K +
Sbjct: 466 MLADRYSAEEVASIYKLI 483


>gi|296163487|ref|ZP_06846234.1| DNA primase [Burkholderia sp. Ch1-1]
 gi|295886268|gb|EFG66139.1| DNA primase [Burkholderia sp. Ch1-1]
          Length = 426

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 131/441 (29%), Positives = 207/441 (46%), Gaps = 29/441 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            +  DF+  L     +  LI   V   R           ACCPFH+EKTPSFH +  K  
Sbjct: 6   RFGDDFLDRLRSETDLPALIECDVKLKRAG-----QSLVACCPFHEEKTPSFHVSPDKNT 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           Y C+ C  +GD + ++      SF ++V  LA + G+PLPV D   ++ +  +     L 
Sbjct: 61  YRCWGCGARGDAIEWMRNKHHMSFHDAVVHLAGVCGIPLPVEDRDSDEDKAQRKRLATLY 120

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + ++ A   F   L  +   R  Y  ++R + +  IE F LG                G 
Sbjct: 121 QALKEAARVFSRGLAKSPAARA-YLEEKRALTAETIERFGLGVVAKG-----VVELMTGS 174

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL--SKGESVKYLNS 236
           +    + A  L    +    YDRFR+R++FPI +  G ++ F GR++     ++ KY+N 
Sbjct: 175 TSRDALLASGLAAQRDDGEIYDRFRHRIMFPIHNETGNLVGFAGRSMIEKPDKTPKYINC 234

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +FHKG+ LY    A   ++          S    ++VEGY DV+SL QAG +  V+
Sbjct: 235 PETEIFHKGRELYALHLAKPAIR----------SGRVAVIVEGYFDVISLHQAGDERAVA 284

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            +GTALT  Q+R L   +  IV  FDGD  G +AA  A  ++L  +  G    F+ L   
Sbjct: 285 PMGTALTNLQVRRLLVHADTIVFAFDGDAAGRKAALAAAAVLLDEMKDGKSARFLFLPED 344

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDPDSF+R +G  A+     +++PL   L          N P+ + +     K  +  I+
Sbjct: 345 EDPDSFVRSHGLEAWHAATEQAVPLSAFLADYVAHGLDRNVPESQVKAAEKAKAILARIQ 404

Query: 417 DQKLRYYYSQAIRDRLQQLFQ 437
                  + +A++ +L+++  
Sbjct: 405 HA---ELFGRAMKAKLEEIIG 422


>gi|160947543|ref|ZP_02094710.1| hypothetical protein PEPMIC_01478 [Parvimonas micra ATCC 33270]
 gi|158446677|gb|EDP23672.1| hypothetical protein PEPMIC_01478 [Parvimonas micra ATCC 33270]
          Length = 603

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 140/618 (22%), Positives = 251/618 (40%), Gaps = 41/618 (6%)

Query: 15  IPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
             I +++  YV   +         +   CPFH EKTPSF        ++CF C   GD +
Sbjct: 16  ADIVSVVSDYVSLKKSGR-----YFMGNCPFHSEKTPSFFLYPETDTFHCFGCGKHGDSI 70

Query: 75  SFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKN 134
           SF+  +    ++ ++++LA   GV L   +      +K       + +    F++  +  
Sbjct: 71  SFVMEMESLDYVSTLKKLAEKFGVVLEYDNYFNANNKKSLDKYYEMNKFVAKFYYKKMME 130

Query: 135 ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDN 194
                   YL +RGI+  +I +F +GYA ++  SL   L+ K    +   E GL+I    
Sbjct: 131 NL--VPKQYLSKRGINQKSINLFFIGYADENWKSLYNELKSKNMDIKIAEELGLIIKTKT 188

Query: 195 SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGA 254
                DRFRNR++FPI +   Q+I FGGRT+   +S KYLNSPE+++F KG N+Y     
Sbjct: 189 GD-YIDRFRNRIMFPILNINKQIIGFGGRTI-VDDSAKYLNSPESVVFKKGDNVYAIDKI 246

Query: 255 LNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLS 314
           +    +S            +++VEGYMDV+SL Q G+  VV+ LGTA TE Q RL+ +  
Sbjct: 247 IENNIRSK-----------VLIVEGYMDVISLYQNGINYVVAGLGTAFTENQARLIKRYF 295

Query: 315 -PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
              + LC+DGD+ G+ A  K             + N ++L    DPD +I+ YG   F K
Sbjct: 296 RNNVYLCYDGDNAGISATNKT---NSVFNEISIKPNIIILPDKLDPDDYIKKYGLNGFNK 352

Query: 374 LIVESLPLVDMLWKRETENRSFNTP-DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
           L+ +   +    ++   +++  +    +      ++   +  +    LR  Y   I +  
Sbjct: 353 LLDKPYDINGFNYENLKKSKKNSNSITDNTIFYENILEFLTKVDTNILRDLYISKISNEF 412

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
                    +   + +  K   +  ++   + +     L   K            ++ L+
Sbjct: 413 GLDRNSLKEDFLNFDKNEKVIEKKNEETEVNYKTENLLLNSDKKVLIMG------IILLM 466

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                +     +L +    N+ L  ++ ++ S+       +P  +        F   +  
Sbjct: 467 KCDNNILNISNKLQEFS-KNSNLYDIFCYVKSNAENNTITVPSVLID-----EFKNSIDN 520

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGY-QQALALYKRFRLLSRQKEEIEKQIAQV---TAK 608
           L         ++   + + +D  +      L    R   ++ +K     Q  +       
Sbjct: 521 LKIVEYIVKCYNEKIKLSTLDYIKLLDITILNFEIRKTTINIEKLRQMDQSNEAVISNLN 580

Query: 609 GEAEKTAILISILHEVHI 626
              EK   L   L  +  
Sbjct: 581 FNVEKLMELNRNLKNIEK 598


>gi|304383392|ref|ZP_07365858.1| DNA primase [Prevotella marshii DSM 16973]
 gi|304335560|gb|EFM01824.1| DNA primase [Prevotella marshii DSM 16973]
          Length = 1319

 Score =  256 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 120/463 (25%), Positives = 197/463 (42%), Gaps = 32/463 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             + FI+ +   + I N++  +    +   N     Y   CPFHD+ TPS   + S+  Y
Sbjct: 2   IDKLFIEKVKSALNIVNVVESFTHLHKAGVN-----YKGVCPFHDDHTPSMVVSPSRQTY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120
           +CF C   GD +SF+   L  +FIE+++  A  AG+  P     P+ E + K +      
Sbjct: 57  HCFVCGASGDVISFVQNYLNLTFIEALRWCAGQAGLDFPEKEMSPEEEARYKEREAQHIA 116

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           I+ A  FF  +L                +   A+  F +GYAP                 
Sbjct: 117 IDAAAKFFQKNLSQ---AESFLVSRGYALTDKALADFGVGYAPVGN---LAMNELTKAGY 170

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239
                  + + G N   +YDRFR+RL+FP    +G +I F GR ++  E V KY+N+ ET
Sbjct: 171 SLQRLQEVDVVGSNEGRTYDRFRDRLMFPFYDIQGHIIGFSGRIITPREGVGKYVNTGET 230

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            LF KGK+++  + A   + K            F  LVEG  DV+SL + GV+NV+   G
Sbjct: 231 PLFTKGKHIFGLYQARKAIGKQ----------GFAYLVEGQFDVMSLYKMGVENVIGGSG 280

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TA T+ Q++LL + +  +V+ +D D  G++A+ K  +L    L  G +V  + L +G DP
Sbjct: 281 TAFTDDQVKLLLRFTDYVVMVYDADAAGVKASLKNCEL---LLKAGAKVKCIRLPKGTDP 337

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D F +    +  +  + E         KR             ++    + + +  + D  
Sbjct: 338 DEFAKAN-VSRTQDKLKELTETFPKALKRMLIPHGCKDETTISDGLNTICSLVACVGDAG 396

Query: 420 LRYYYSQ----AIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           LR  Y +      + ++  +  K             K      
Sbjct: 397 LRLEYVKSVAADFKSKIGIVDDKVRNIRLKIQEALPKTKTQAG 439


>gi|300214613|gb|ADJ79029.1| DNA primase [Lactobacillus salivarius CECT 5713]
          Length = 328

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 114/339 (33%), Positives = 191/339 (56%), Gaps = 20/339 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   I++L  ++ I ++I QYV   +   N     ++  CPFH EKTPSF  N+ K  +
Sbjct: 5   IPEATIEELRSNVNILDVISQYVQLHKSGKN-----WFGICPFHSEKTPSFSVNEQKQIF 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120
           +CFSCH  G+   F+  L G SF ESVQR+A +A     + + + + + +      + +L
Sbjct: 60  HCFSCHRGGNVFKFIMELEGLSFPESVQRVAELANYDLGISIDNSENQNETSENGKIRKL 119

Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            +  T  +HH L      +    YL +RGI  + IE F++G+AP++         QK + 
Sbjct: 120 YKETTKLYHHILVNTELGEPALEYLHKRGIKDNLIEEFEIGFAPENNILEAFFKEQKLYD 179

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPE 238
            + + ++GL I+  ++    +RF  R++FPIR + GQ IA+ GR L  + ++ KYLNSPE
Sbjct: 180 YQILRKSGLFIERQST-ELVERFNGRVMFPIRDTSGQTIAYSGRLLEKRDDAPKYLNSPE 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T +F+K K L+NF  A   +++              IL EG+MDV++  ++GV+N ++S+
Sbjct: 239 TAIFNKRKVLFNFDKAKGIIRR----------EKEAILFEGFMDVIAAYRSGVKNGIASM 288

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           GT+LT+ Q++ L +++  +V+C+DGD+ G  A  +A   
Sbjct: 289 GTSLTDEQIQALNRITSHLVICYDGDNAGQNATKRAXRN 327


>gi|32474202|ref|NP_867196.1| DNA primase [Rhodopirellula baltica SH 1]
 gi|32444739|emb|CAD74741.1| DNA primase [Rhodopirellula baltica SH 1]
          Length = 736

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 144/714 (20%), Positives = 253/714 (35%), Gaps = 125/714 (17%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           D  + +     I ++IG  ++   +        + A CPFH++  PS   N  +  + C+
Sbjct: 39  DVKERVRAATDIVDVIGHDLELRPQGR-----HFVARCPFHNDTRPSMTVNQERQSWKCW 93

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTDLIRLIE 122
            C + GD  SF+    G  F  +++ LA  AG+ +P  +            +  L++ ++
Sbjct: 94  VCDIGGDIFSFVMQREGVDFPTALRSLAERAGIEIPEFNRGPKTQPGSPDDKATLMKAVD 153

Query: 123 VATDFFHHSL---KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +    +   L   K+   K    YL  RGID    E+FK+G+APDS       L++  FS
Sbjct: 154 LICRAYFDELACGKSDDAKLARDYLASRGIDDSNRELFKIGFAPDSWDFAVNLLKRNKFS 213

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS------------- 226
           E     AG+ I  D  +  YDRFR RL+FPI +++GQ I+ GGR +              
Sbjct: 214 EAVAQAAGVAIGRDGKSGCYDRFRGRLMFPIDNAQGQAISLGGRIIPAIANRIAEAKGDG 273

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
                KY+N PET+LF K   LY    A + ++          ++  ++++EGY DV++ 
Sbjct: 274 SNGGAKYINGPETMLFRKSNELYGLHLARDAMR----------AADEVLVMEGYTDVVAT 323

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
             AG+ + V+ LGTALT   +R+L +   R+VL  DGDD G R A + ++L    +    
Sbjct: 324 RMAGIDHSVAVLGTALTASHVRVLKRFVNRVVLVLDGDDAGKRRAEEVLEL---FVTADA 380

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
            +  + L  G DP  F+          +  ++   +D    R TE         R    I
Sbjct: 381 DLRILTLPDGLDPADFLAQQSAANLLDMAGKAPDAMDHKLNRLTEGVDVTRDTHRVTTAI 440

Query: 407 HLK------------NCINHIKDQKLR-----YYYSQAIRDRLQQLFQKYITEHSGYGRY 449
                               I    +R         + ++ RL+ + ++         RY
Sbjct: 441 ETMLGVLTKTPTKSDKTELKIDQLLVRMSQTFGLPVERLQRRLETVREETAERERKQARY 500

Query: 450 WKKNAR-----HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL---------------- 488
            K N             P+ +   S              E A +                
Sbjct: 501 RKANTSGGHQDSAQTSAPASQKPASRPPSSASMDDFDPFEQAAMEDAAAFGIDEGFDDYA 560

Query: 489 ------LTLINHP-------------------------AILQEQY----------QELAD 507
                     NHP                          + +             + +  
Sbjct: 561 PSTPSDFGAANHPRRNSPSGPTRPQPPEQGAAITGVDRELFEILIESPEVAAMAVEAIDP 620

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
               +N  + L S      ++ +    + +   L        +  L  ++          
Sbjct: 621 SWLHSNTAKMLLSAYQDLDLQGRDLDVDSVLVLLENDFLKNQIITLQERIEQRA------ 674

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--KTAILIS 619
             +++D       A+    R R    +K    +++   +   + E      L +
Sbjct: 675 -GHVLDEPHLRYTAILTRFREREFDAEKTRQIEKLQSASLPEDEELAMLEQLFA 727


>gi|148927129|ref|ZP_01810758.1| DNA primase [candidate division TM7 genomosp. GTL1]
 gi|147887423|gb|EDK72868.1| DNA primase [candidate division TM7 genomosp. GTL1]
          Length = 370

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 107/391 (27%), Positives = 197/391 (50%), Gaps = 25/391 (6%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           +D  +D+   + I ++I +YV   R   N     +    PF  EKTPSF  +  K  ++ 
Sbjct: 2   QDAKEDVRSRLNIEDVIAEYVPLKRAGRN-----FKGLSPFTQEKTPSFFVSPDKHIWHD 56

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRLIEV 123
           FS +  GD  SF+  + G  F  +++ LA  AGV L        +   K +  L   +++
Sbjct: 57  FSSNKGGDVFSFIMEVEGIDFRAALELLARKAGVDLSLYRSSASQGIAKKKHRLHEALDI 116

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
           A +++  +L   +     Y   +RG+    ++ F++GYAP +  +L + L  +GFS +++
Sbjct: 117 AANYYQQTLVRNQHALE-YVFKKRGLSKKVVQDFRIGYAPSTGDALTQFLLGRGFSAQEL 175

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILF 242
            +AGL           D FR R++ P+   +GQV+ F  R +    ++ KY+N+P+T+L+
Sbjct: 176 QDAGLATRRYR--GLGDMFRGRMMVPLMDGQGQVVGFTARLIDDDPKAPKYINTPQTLLY 233

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            KG+ ++    A   ++          ++ + ++VEG +DV+S  Q  V+ VV++ GTA+
Sbjct: 234 DKGRQVFGLHLAKEAIR----------TNDYAVIVEGNLDVVSSHQVDVRQVVATAGTAM 283

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG-EDPDS 361
           T++ L+ L +LS  + L FD D  GL A  +AI +       G  ++ + L    +DPD 
Sbjct: 284 TQWHLKALRRLSENVRLSFDSDKAGLAATERAIPIAQ---EAGVNLSIITLPDDAKDPDE 340

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETEN 392
            I+      ++  I  + P+VD + ++ +  
Sbjct: 341 LIQ-QSIEKWQGAINTAQPVVDWVLEQYSRR 370


>gi|90411914|ref|ZP_01219922.1| DNA primase [Photobacterium profundum 3TCK]
 gi|90327172|gb|EAS43544.1| DNA primase [Photobacterium profundum 3TCK]
          Length = 518

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 139/553 (25%), Positives = 246/553 (44%), Gaps = 46/553 (8%)

Query: 70  KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRLIEVATDF 127
            G+ L F+       F+E+++ L++  G+ +P  D       +   +  L   + + + F
Sbjct: 2   HGNVLDFVMEFDRLEFVEAIEELSSQLGLEVPREDGGKPSGPRAAEKRSLYDQMGLISQF 61

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
           +   L+    K    YL  RG+    ++ F +GY PD    +R    +   S++ ++  G
Sbjct: 62  YQSQLRTPDGKTAIDYLKNRGLSGEVVQKFGIGYIPDQWDMVRSRFGRDPESQKALVTTG 121

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247
           +LI+ D+    YDRFR R++FPI   RG+VI FGGR L    + KYLNSPET +FHKG+ 
Sbjct: 122 MLIENDSGRR-YDRFRGRVMFPIHDRRGRVIGFGGRVL-GDGTPKYLNSPETPIFHKGRE 179

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           LY  +  L   ++  +          +++VEGYMDV++L Q GV   V+SLGTA T   L
Sbjct: 180 LYGLYEVLQAHREPEK----------LLVVEGYMDVVALAQFGVDYAVASLGTATTSDHL 229

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
           + L++ +  +V C+DGD  G  AA++A++  L  L  G ++ F+ L  GEDPDS IR  G
Sbjct: 230 QTLFRQTSTVVCCYDGDRAGREAAWRAMEQALPFLTDGRQLKFMFLPDGEDPDSCIRAEG 289

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
           K AFE+   +++PL + ++         ++ +  A+L I     I+ +    LR Y  + 
Sbjct: 290 KDAFEERTNQAMPLTEFIFNTLMRQVDTSSKEGMAKLSILAVPLIDKVPGGTLRLYLREL 349

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           +  +L    +  + +                    S++ +++  +     K+  +REA  
Sbjct: 350 LGKKLGLPDEAQLQQL------------------ISKQGIETKKIAAPEIKRTPMREA-- 389

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           +  LI  P  +     E+ D    +     L   +             ++ +        
Sbjct: 390 IALLIQKPNFVNSLEFEMTDFEGIDVPGLNLLLSIVDKCRTNPNITTGQLLEHWRGNKQE 449

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF--RLLSRQKEEIEKQIAQV 605
            ++ +L                   D  Q     L    R   + + +Q E+++ +   V
Sbjct: 450 AMMARLAAWELPLS----------DDEDQTLNVFLDAMDRIIGQCVKQQIEKLQAKSNTV 499

Query: 606 TAKGEAEKTAILI 618
               E ++   L+
Sbjct: 500 GLSVEEKQELQLL 512


>gi|32262749|gb|AAP77796.1| DNA primase [Helicobacter hepaticus ATCC 51449]
          Length = 519

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 134/561 (23%), Positives = 244/561 (43%), Gaps = 53/561 (9%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH+EKTPSF  + +KGFY+C+ C V GD + FL      SF+ESV+++AA+    
Sbjct: 1   MACCPFHNEKTPSFIISPTKGFYHCYGCGVGGDAIKFLMEYEKLSFVESVEKIAAMTNFA 60

Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159
           L   +   +K + I      +++    F+   L +   K    YL  R + + +IE F+L
Sbjct: 61  LEYENTYEKKPDSI------VLDEIMRFYQKQLLSH--KPSLEYLASRQVANASIEKFRL 112

Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219
           GY   S  ++     +    +E +      I G ++   Y RF +R+IFPI S  G+V+ 
Sbjct: 113 GYCGASFETINFLNAKILNKQEALEF---GIIGKDNGREYARFNDRIIFPIHSPNGKVVG 169

Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279
           FGGRT+    + KY+NSP++ +F+K K LY ++ A + + K  +          II+ EG
Sbjct: 170 FGGRTM-SNANAKYINSPQSKIFNKSKLLYGYYLAKDRIYKQKK----------IIVCEG 218

Query: 280 YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVL 339
           Y+DV+ L QAG    V++LGTALT+  L LL K  P+++L +DGD  G+ AA+KA  ++ 
Sbjct: 219 YLDVIMLHQAGFDYAVATLGTALTKEHLPLLRKGEPKVILSYDGDKAGINAAFKAAKILS 278

Query: 340 CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399
              I G     V+   G DP   +         +L    +  ++ +      +     P 
Sbjct: 279 EASIEG---GVVIFENGADPADMVAHKQINELSELFSHPISFIEFVLTHIARSYELENPL 335

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
           ++ +        ++ +    L+  Y   +   L    +   T+H+               
Sbjct: 336 QKEKALAESTQFLHTL-SPLLQEEYKPLLARLLSLPTRLIHTQHNKAHSTQTIFNASMQ- 393

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL- 518
                                   E+ L+ + +  P ++    + +    +   + +K+ 
Sbjct: 394 ---------------------DFAESVLIKSFLEKPNLIDFAIEYIDISLF---KYKKIE 429

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           +  + +   +    L   ++  +        L + L   V  A         +  ++   
Sbjct: 430 FGLVTNQCYDDPRLLAISLNDNIKPLPDLPSLKEHLRLFVTQAYSQLLGQIPHSNEMSLR 489

Query: 578 YQQALALYKRFRLLSRQKEEI 598
            +  +    + ++L+ +K E+
Sbjct: 490 RKSEIIKELKTKILTLKKGEL 510


>gi|124025647|ref|YP_001014763.1| DNA primase [Prochlorococcus marinus str. NATL1A]
 gi|123960715|gb|ABM75498.1| CHC2 zinc finger:Toprim domain [Prochlorococcus marinus str.
           NATL1A]
          Length = 625

 Score =  254 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 152/584 (26%), Positives = 260/584 (44%), Gaps = 39/584 (6%)

Query: 53  FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
                 K FYYCFSC   G+ + FL      SF + V  LA    VP+  ++   +++ K
Sbjct: 1   MSVIPGKQFYYCFSCGAGGNAIKFLMEFQRQSFSDVVLELAKKYQVPIDTIEGPQQERLK 60

Query: 113 ----IQTDLIRLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRY 167
                +  L R+++ AT +F + L +   +    YL ++R +    +  F+LG+APD+  
Sbjct: 61  QQLSRRDTLYRVLKTATGWFRNQLNSPCGENALNYLKNKRNLSDGTLINFELGFAPDNWD 120

Query: 168 SLREHLRQ-KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
           SL ++    +  S E +  AGL++        YDRFRNR+I PI   + +VI FGGR+L 
Sbjct: 121 SLLKYFVDIEKVSVEILESAGLIVPRKGGNGFYDRFRNRIIVPIHDRQKRVIGFGGRSLD 180

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
             E  KYLNSPET +F KGKNL+ F  +   ++K            + ++VEGY DV++L
Sbjct: 181 GSEP-KYLNSPETEIFEKGKNLFGFDKSTLSIRKK----------DYAVVVEGYFDVMAL 229

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344
             +G+ NVV+SLGTAL+  Q+ LL +   S +I+L FD D+ G+RAA +AI  V    I 
Sbjct: 230 HDSGITNVVASLGTALSRNQITLLSRATDSKKILLNFDSDNAGIRAANRAISEVENLAIQ 289

Query: 345 G-NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
           G   +  + L  G+DPD F++    + +E L   S   +D    +  ++   +  D+  E
Sbjct: 290 GQLDLRVLQLPSGKDPDEFLKGNSPSEYEALAARSPLWMDWQIDQSLKDLDLSKSDQFQE 349

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
               L + +  +    +R +Y Q +  RL     ++  +     R      R   +    
Sbjct: 350 AVSSLVSLLGKLPQTAIRTHYLQKVAQRLSGGQGRFALQLEEDLRNQISGQRWHGRSKK- 408

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHP---AILQEQYQELADIRYDNNELQKLWS 520
                  + K +        E+ +L T I+ P   + ++ + +      +  N  + +WS
Sbjct: 409 -------IDKPQEISLRERSESDILFTYIHCPNYRSFIRYELRLRDLDDFAINHHRAIWS 461

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFG----ELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            + +           E   R  +        +L+K+L      +          ++DV +
Sbjct: 462 TISNIEENMFGPETVEKINRFNDSNNILADVDLIKKLLDNFLSSDNEHLPKLTPLLDVNE 521

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQ--IAQVTAKGEAEKTAILI 618
              +   L      +      +EKQ  + +     +A  +  L 
Sbjct: 522 --LRLATLNDPESFIRGAMAALEKQKSLKRCRHLIDAWSSQRLQ 563


>gi|327539654|gb|EGF26262.1| DNA primase [Rhodopirellula baltica WH47]
          Length = 736

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 144/703 (20%), Positives = 260/703 (36%), Gaps = 87/703 (12%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           D  + +     I ++IG  ++   +        + A CPFH++  PS   N  +  + C+
Sbjct: 39  DVKERVRAATDIVDVIGHDLELRPQGR-----HFVARCPFHNDTRPSMTVNQERQSWKCW 93

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTDLIRLIE 122
            C + GD  SF+    G  F  +++ LA  AG+ +P  +            +  L++ ++
Sbjct: 94  VCDIGGDIFSFVMQREGVDFPTALRSLAERAGIEIPEFNRGPKTQPGSPDDKATLMKAVD 153

Query: 123 VATDFFHHSL---KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +    +   L   ++   K    YL  RGID    E+FK+G+APDS       L++  FS
Sbjct: 154 LICRAYFDELASGQSDDAKLARDYLASRGIDDSNRELFKIGFAPDSWDFAVNLLKRNKFS 213

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS------------- 226
           E     AG+ I  D  +  YDRFR RL+FPI +++GQ I+ GGR +              
Sbjct: 214 EAVAQAAGVAIGRDGKSGCYDRFRGRLMFPIDNAQGQAISLGGRIIPAIANRIAEAKGDG 273

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
                KY+N PET+LF K   LY    A + ++          ++  ++++EGY DV++ 
Sbjct: 274 SNGGAKYINGPETMLFRKSNELYGLHLARDAMR----------AADEVLVMEGYTDVVAT 323

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
             AG+ + V+ LGTALT   +R+L +   R++L  DGDD G R A + ++L    +    
Sbjct: 324 RMAGIDHSVAVLGTALTASHVRVLKRFVNRVILVLDGDDAGKRRAEEVLEL---FVTADA 380

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
            +  + L  G DP  F+          +  ++   +D    R TE         R    I
Sbjct: 381 DLRILTLPDGLDPADFLAQQSAANLLDMAGKAPDAMDHKLNRLTEGVDVTRDTHRVTTAI 440

Query: 407 HLK------------NCINHIKDQKLR-----YYYSQAIRDRLQQLFQKYITEHSGYGRY 449
                               I    +R         + ++ RL+ + ++         RY
Sbjct: 441 ETMLGVLTKTPTKSDKTELKIDQLLVRMSQTFGLPVERLQRRLETVREETAERERKQARY 500

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI---LQEQYQELA 506
            K N     Q         S     +     S+ +           A    + E + + A
Sbjct: 501 RKANTSGGHQDSAQTSAPASQKPASRPPSSASMEDFDPFAQAAMEDAAAFGIDEGFDDYA 560

Query: 507 ---DIRY---DNNELQKLWSFLFSDFVEQKY----FLPEEIHQRLCERGFGELLKQLDRQ 556
                 +   ++               EQ         E     +       +  +    
Sbjct: 561 PSTPSDFGAANHPRRNSPSGPPRPQPPEQGAAITGVDRELFEILIESPEVAAMAVEAIDP 620

Query: 557 VRDAGLWSATTEANIVDV----RQGYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEA 611
                  +    +   D+    R     ++ +      L  Q   ++++I  +     + 
Sbjct: 621 SWLHSNTAKMLLSAYQDLDLQGRDLDVDSVLVLLENDFLKNQIITLQERIEQRAGHVLDE 680

Query: 612 E--KTAILISILHEVH------IQIHQIES-------QEAMIE 639
              +   +++   E         QI +++S       + AM+E
Sbjct: 681 PHLRYTAILTRFREREFDAEKTRQIEKLQSASLPEDEELAMLE 723


>gi|288818664|ref|YP_003433012.1| DNA primase [Hydrogenobacter thermophilus TK-6]
 gi|288788064|dbj|BAI69811.1| DNA primase [Hydrogenobacter thermophilus TK-6]
 gi|308752253|gb|ADO45736.1| DNA primase [Hydrogenobacter thermophilus TK-6]
          Length = 514

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 131/579 (22%), Positives = 237/579 (40%), Gaps = 70/579 (12%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           +++L  I I  +I  Y+D  +  +N     Y A CPFH + TPSF  + S+G + CF C 
Sbjct: 5   EEILRKIDIVEVISSYIDLKKVGSN-----YSARCPFHPDDTPSFFVSPSRGIFKCFGCG 59

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
           V GD + F++     S+ E++ +LA   G+PL +      ++++  + +IR++E+  D++
Sbjct: 60  VGGDAIKFVALYENISYSEALIKLAKRYGIPLKI------REDRKDSKVIRILELVADYY 113

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
           H++LK +       YL  RG+ S +I+ F+LG++P S   +    ++      +     +
Sbjct: 114 HNALKKS--PHAVDYLKSRGVSSRSIQKFRLGFSPSSEELVNFLRKEGLIDAYEKTGNLV 171

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
            ID        D F  R++ PIR  RG+ IAFGGR L +G+  KY+NSPE+  F K + +
Sbjct: 172 KID---EGIYRDLFTGRVVIPIRDERGRCIAFGGRVLYEGKP-KYINSPESEFFKKREVM 227

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           +  +    +++             F I+VEGY DV+S+   G +N V+ LGT+  E   +
Sbjct: 228 FGLYEGKEHIK----------DMGFAIIVEGYFDVISMHDEGYKNTVAPLGTSFGEEHAK 277

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
           LL + +  ++L FDGD  G RA  +        L    +V    L  GEDP   +    K
Sbjct: 278 LLSRYTKDVILLFDGDSAGKRAIRQTA---PYLLSQDIKVRVAYLPEGEDP-DTLVKRDK 333

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
                L+  +  + ++  K           + + E    L      +K++  ++   +  
Sbjct: 334 ELLRLLLEGAKDIFELFIKMLR--------EGQKEALKDLVYFAGFVKNKVYQHDILREA 385

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
                        +     R  +                       +  +K +  E   L
Sbjct: 386 SQVSGFALSALYDQLPKVQRKEE----------------------KEEDEKLTYAERIFL 423

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           L L+          +E       +    ++   + S      + +PE +           
Sbjct: 424 LGLMK------LGKEEYLKDVLLSPNAMRIAEHILS---GDYHLVPESVKNAKVYDLESA 474

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
            L   +        +    ++      +  QQ +   KR
Sbjct: 475 FLASCEMLKIGKEEFKEGVKSIKDMREEKSQQVVRFRKR 513


>gi|29840585|ref|NP_829691.1| DNA primase [Chlamydophila caviae GPIC]
 gi|29834935|gb|AAP05569.1| DNA primase [Chlamydophila caviae GPIC]
          Length = 591

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 139/588 (23%), Positives = 241/588 (40%), Gaps = 49/588 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           Y  + + +L   I I  ++ +++   R         Y ACCPFH EKTPSF  N +  +Y
Sbjct: 2   YTEESLDNLRHSIDIIEVLSEHLHLKRSGA-----TYKACCPFHVEKTPSFIINPTGAYY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIRL 120
           +CF C   GD +SFL   LG SF E+V  L+    V L   + D +       + +L ++
Sbjct: 57  HCFGCGAHGDAISFLMNHLGYSFSEAVLTLSKKFHVDLIVKIKDTQSPFSTGAKDELRQI 116

Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              A   F   L   A  +    YL  RG     I+ F LGYAP+    ++    +    
Sbjct: 117 NSEAEKLFRFCLYQLAEGREALQYLYRRGFSPDTIDRFHLGYAPEQTLFIQAMREKDISE 176

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPE 238
           ++      +       +        R+IFP+  + G  I F  R  L      KY+N+PE
Sbjct: 177 KQLEDAGFIGNKWFLFSR-------RIIFPVHDALGHTIGFSSRKFLENTRGSKYVNTPE 229

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           TI+F K + L+    +   + K  R          +ILVEG  D L +  +G    +++ 
Sbjct: 230 TIIFKKSRALFGLHLSRRRIAKEKR----------VILVEGQADCLQMIDSGFNCTLAAQ 279

Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           GT+ TE  ++ L      +  L FDGDD G++AA +  D+       G  V    L +GE
Sbjct: 280 GTSFTEDHVKELSKLGVLKAYLLFDGDDAGVKAAIRVGDMCQ---TAGIAVMVCRLPKGE 336

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DPDSF+   G     +L+ +S   +  L   +       +P E+A +       I    +
Sbjct: 337 DPDSFLMHKGARLLGELLDQSEDYLTFLVSEKIRVYPNFSPREKALVIEETITQIKKWGN 396

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             +       + + L+QL    +   S      K  +     K P     +   +   + 
Sbjct: 397 LIV-------VYEHLKQLASLMMIPESMVFSLAKLESGITPSKAPVANKEKLPKIHSDV- 448

Query: 478 KKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
               + E  +L  ++    ++ +I          + + + E +KL+S L   + +    L
Sbjct: 449 ----IIETDILRCMLFCKPHNISIPHTAKNYFTAMDFKHPECRKLFSHLIEYYEKHHSNL 504

Query: 534 P-EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
           P ++    L ++   ELL  + R++    L +   ++      + +++
Sbjct: 505 PFDKALSLLEDKIIIELL--IKRRINTDCLENVFVQSLQKLADRQWRE 550


>gi|116514980|ref|YP_802609.1| DNA primase [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116256834|gb|ABJ90516.1| DNA primase [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 590

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 140/499 (28%), Positives = 242/499 (48%), Gaps = 40/499 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P++FI +++    I  +I +Y+   +   N     Y   CPFH EKTPSF  N  K F
Sbjct: 8   KIPQEFIHEIIEKTNIIEIINRYITLKKTGNN-----YKTLCPFHYEKTPSFTVNSEKQF 62

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIR 119
           +YCF C + G+ + FL       F+ S+  L ++ G+ +P    + + +KK   +  + +
Sbjct: 63  FYCFGCGIHGNVIDFLMQYEKLDFLSSINELTSLHGIKIPYIQYNSQFKKKFFYKKKIYK 122

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           +++  +  +  +L    ++    YL +RGI S  ++ F LGYA  + Y +   +++K  +
Sbjct: 123 ILKKTSKIYIKNLFKVPNQAY-NYLIKRGITSKIMKNFSLGYALSNNYQITNFIKKKTTN 181

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              II+ GL I   N     DRF+ R+IFPI++  G +  FGGR +++    KYLNSPET
Sbjct: 182 ISTIIDCGLSIYEKNKIK-QDRFKERIIFPIKNKYGIIKGFGGRIINQYNYPKYLNSPET 240

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           I F K KNLY  +             ++      I++VEGY DV+SL Q  +   ++ LG
Sbjct: 241 ITFFKKKNLYGIYE----------LILKNPKPKKILVVEGYFDVISLAQKNINYSIALLG 290

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T +T YQ++ ++++S +I+ CFDGD  G  A++K+++L+L  L     +NF+LL + EDP
Sbjct: 291 TNITTYQIKKIFQISKKIIFCFDGDKAGRIASWKSLNLILPFLYDEYIINFLLLPKNEDP 350

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            S I   GK  FEK I +S       +K+ T   + +  ++  +L       I  I  + 
Sbjct: 351 SSLIIKEGKKKFEKRIKKSESFYSFFFKKVTNKINLSCINDCIKLSRITIPLIKKIPSKI 410

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           ++ Y  + + +++  L    + +   +                     Q    K      
Sbjct: 411 IKIYLRKILGNKIGILDSYQLKKLIQF---------------------QKEKKKKINKPV 449

Query: 480 PSLREAALLLTLINHPAIL 498
                  L+  +I +P ++
Sbjct: 450 KITTMRLLISLIIQYPKLV 468


>gi|332295128|ref|YP_004437051.1| DNA primase [Thermodesulfobium narugense DSM 14796]
 gi|332178231|gb|AEE13920.1| DNA primase [Thermodesulfobium narugense DSM 14796]
          Length = 560

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 134/603 (22%), Positives = 259/603 (42%), Gaps = 51/603 (8%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
             +   I I+++IG YV   +R            CPFH+EKTPSF+ N  KG +YCF C 
Sbjct: 5   DYIKKQISITDVIGHYVHLRQRGN-----SLVGLCPFHNEKTPSFYVNPEKGLFYCFGCK 59

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
           V GD  +FL  L   +F+E+ ++ A+I G     V+   E +   +  ++R++  A  FF
Sbjct: 60  VGGDVFTFLMKLENLTFVEAFKKAASICG-----VEVSSEFESSSKDQVLRVLREAGLFF 114

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
             SL     K    Y+  RG     ++ +++G+ P+    L E L++  FSE+ I ++ +
Sbjct: 115 RESLWKESGKNALEYMRSRGFSDDFLKEYEIGFVPEDASELVERLKKLSFSEDIIYKSAI 174

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILFHKGKN 247
                N      R   R+ FPI++   +++AFGGR +    +S KYLN P+T++F K   
Sbjct: 175 F---LNFKEGVLRLSGRVSFPIKNVESEIVAFGGRLIKNDLDSPKYLNYPDTLVFRKKNT 231

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           L+    A  +++ S R          +ILVEGY+D L + Q G +N V+SLGT L     
Sbjct: 232 LFLIDKAFEHIKSSQR----------VILVEGYLDALMMHQKGFRNTVASLGTTLNPSSF 281

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
           + + KL  R+++ +D DD G  A  + +++          ++   L  G DP   +  Y 
Sbjct: 282 KRIDKLVERLIIMYDSDDAGRIATNRLLNMTDQFS---CNLSVASLPEGLDPHDVLTKYD 338

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
           K+  E+++   +  VD        + S     +R +  + ++   N   ++     + + 
Sbjct: 339 KSVMERILQNYISGVDFRINLIFSDPSNTIESKRQKYRLAIRELQNLGAEEI--EDFVKK 396

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           + ++L     + +++     +      +                               +
Sbjct: 397 VSEKLHVPESRILSDSERMSKRKMSGEKIFYNLVNYFD-------------------RHI 437

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           L T+I  P            + +++ E  +    +F+           ++  +   +   
Sbjct: 438 LRTIIERPDFYFLLKSFDYSMLFNDEEFLQAAEEIFNMDSFDIDENILDLSDKTKAKVSQ 497

Query: 548 ELLKQ---LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
            +L+    +     +  L  A T  N++ +++   +       F  L+++++E+  +IA+
Sbjct: 498 IILEDVPIIPDDQWEEILQLAWTRKNMLLLKENLSKDKDAMVEFLELAKKEKELSSKIAR 557

Query: 605 VTA 607
           +  
Sbjct: 558 IND 560


>gi|320321555|gb|EFW77664.1| DNA primase [Pseudomonas syringae pv. glycinea str. B076]
          Length = 428

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 121/433 (27%), Positives = 193/433 (44%), Gaps = 30/433 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            Y  +F+  +     +  +IG+ +   +         + ACCPFH EKTPSF  +  +  
Sbjct: 6   RYSDEFLARVREDADLVGIIGRDITLKKAGK-----AFKACCPFHGEKTPSFEVSPERNT 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ----TDL 117
           Y C+ C  +GD + ++       F E+V  +A+ +G+ +P        + +++      L
Sbjct: 61  YKCYGCPAQGDAIKWMMEFHKLPFQEAVAAVASDSGIAVPESQVDDSAESQMRRSRLASL 120

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            + ++ A   +   ++ +   R +            I  ++LG            L  K 
Sbjct: 121 TKALQDAARLYAGGIERSPTGRQYLTTTRSL-SEETITSYQLGTVATG----VVELLAKR 175

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL--SKGESVKYLN 235
              E +IE GL I        +DRFRNR++ PI +  G +I F GR++      + KYLN
Sbjct: 176 HDPETLIECGLAIRA-EDGRLFDRFRNRIMIPIYNESGALIGFAGRSMIEKPDRTPKYLN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPET LFHKG  LY    A   ++          S+   I+VEGY DVL+  QAG   VV
Sbjct: 235 SPETELFHKGNELYALNVAKATIR----------SARHAIVVEGYFDVLTAHQAGDCRVV 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           + +GTALT  Q R L+  +  +   FDGD PG  AA +A  +VL  +  G    F+ L  
Sbjct: 285 APMGTALTNTQARRLFSHADTVTFAFDGDKPGRSAALRASAVVLEEIRDGKTAQFLFLPE 344

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G DPD  I  +G  A+   +  + PL   L          + P+ +       +  +  +
Sbjct: 345 GSDPDQLIASHGLDAWNDALATAYPLSRFLADYVKHGLDMDVPESQVRAAEKARKILARV 404

Query: 416 KDQKLRYYYSQAI 428
           ++  L   Y QA+
Sbjct: 405 REATL---YKQAL 414


>gi|218282284|ref|ZP_03488583.1| hypothetical protein EUBIFOR_01165 [Eubacterium biforme DSM 3989]
 gi|218216752|gb|EEC90290.1| hypothetical protein EUBIFOR_01165 [Eubacterium biforme DSM 3989]
          Length = 422

 Score =  250 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 113/443 (25%), Positives = 203/443 (45%), Gaps = 23/443 (5%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M+    + IK +     I +++  Y+  +++  N     Y A CPFHD+  PS   +  K
Sbjct: 1   MSWISEEDIKAIRQQADIVDVMSHYITLEKQGKN-----YKAICPFHDDHDPSLSISTDK 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
             + CF C+  G+  +F+  +   SF+E+V ++A     PL +   K + K      L  
Sbjct: 56  QIFKCFVCNTGGNVFTFVQKIENISFLEAVCKVAEWIHYPLHLDTSKFQVKVDENQPLFD 115

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            I+    F    L++   + +  YL +R I+   I+ F++GYAP+S  S++     K   
Sbjct: 116 CIQSYIRFLTFELESENGESVKRYLSQRKINEDIIKRFEIGYAPESSRSVKYL---KAKG 172

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPE 238
             + I     +   +   +Y  F +RL+ PI    G  + F  R L++  +  KY+N+ E
Sbjct: 173 FNEQILLDTGLIRTHDLNTYAVFDHRLMIPIHDEHGNPVGFTARRLNEDKDIAKYINTSE 232

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           T ++HKG  ++N+  A  + +K+ R           ILVEG MDV++  +A +   ++ L
Sbjct: 233 TKIYHKGNLIFNYHRAKEFAKKNKR----------CILVEGAMDVIAFEKADIHESIACL 282

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA T+ Q+ LL +L+  +V+C+DGD  G  A YK   L +     G   + V  + G+D
Sbjct: 283 GTACTKEQMTLLKRLNVPLVVCYDGDRAGKAATYKFGKLAVD---YGLNFSIVKNTTGKD 339

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD      GK      + +++  V+ L++        +  +++ +    ++  I      
Sbjct: 340 PDEIFNELGKDELYLSVHKTVSFVEFLFEYLPNQYDLDNYEDKKKFTSEMQAFIERTCTD 399

Query: 419 KLRYYYSQAIRDRLQQLFQKYIT 441
             +  Y   IRD          +
Sbjct: 400 FEKADYYSRIRDLTGFDLSNSAS 422


>gi|83754038|pdb|2AU3|A Chain A, Crystal Structure Of The Aquifex Aeolicus Primase (Zinc
           Binding And Rna Polymerase Domains)
          Length = 407

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 133/440 (30%), Positives = 202/440 (45%), Gaps = 37/440 (8%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
             I +L   I I ++I +Y++ ++  +N     Y   CPFH + TPSF+ + SK  + CF
Sbjct: 5   SDIDELRREIDIVDVISEYLNLEKVGSN-----YRTNCPFHPDDTPSFYVSPSKQIFKCF 59

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
            C V GD + F+S     S+ E+   LA   G  L        +K      +   ++   
Sbjct: 60  GCGVGGDAIKFVSLYEDISYFEAALELAKRYGKKL------DLEKISKDEKVYVALDRVC 113

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
           DF+  SL   R+     Y+  RGID      F LGYAP S   ++     K     +   
Sbjct: 114 DFYRESLLKNREASE--YVKSRGIDPKVARKFDLGYAPSSEALVKVL---KENDLLEAYL 168

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
               +         D F  R++ PI+  RG+VI FGGR + + +S KY+NSP++ +F KG
Sbjct: 169 ETKNLLSPTKGVYRDLFLRRVVIPIKDPRGRVIGFGGRRIVEDKSPKYINSPDSRVFKKG 228

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
           +NL+  + A  Y++             F ILVEGY D+L L   G++NVV+ LGTALT+ 
Sbjct: 229 ENLFGLYEAKEYIK----------EEGFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQN 278

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
           Q  LL K + ++ + +DGDD G +A   AI L    L  G  V  V L  G DPD FI+ 
Sbjct: 279 QANLLSKFTKKVYILYDGDDAGRKAMKSAIPL---LLSAGVEVYPVYLPEGYDPDEFIKE 335

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
           +GK    +LI  S  L + L K           +   E     +  +  I D   R+  +
Sbjct: 336 FGKEELRRLINSSGELFETLIKTAR--------ENLEEKTREFRYYLGFISDGVRRFALA 387

Query: 426 QAIRDRLQQLFQKYITEHSG 445
                + +   +  + +   
Sbjct: 388 SEFHTKYKVPMEILLMKIEK 407


>gi|85057388|ref|YP_456304.1| DNA primase [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789493|gb|ABC65225.1| DNA primase [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 604

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 135/613 (22%), Positives = 254/613 (41%), Gaps = 42/613 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I  +   + I +L+ ++V   +   N     Y   CPFHDEKTPSF  +  + 
Sbjct: 1   MKDNKQLINQINEKMTILDLVQEFVQLKKSGKN-----YMGLCPFHDEKTPSFSVSPERN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
              C SC   G+ + F  ++      +++  LA   G+         +K          +
Sbjct: 56  IGVCMSCKKGGNPVFFYKSIKNIHLNQAIFELATRLGI----NTSLRQKNTSQYQKFYNI 111

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           ++ ATDF+ H LKN   K++  YL++RG  +  I+ FKLGYAP + +  R  +    F  
Sbjct: 112 MQEATDFYAHQLKNN--KQVLNYLEQRGFGNEIIKKFKLGYAPKASHLSRYLIEFAKFDP 169

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + + +  L+   D +   YD F+NR+IFPI +  GQ++AF  R+L   +  KYLNSPET+
Sbjct: 170 DDLKKLNLINQNDKTGKFYDFFKNRIIFPITNKSGQIVAFSSRSL-DNKIPKYLNSPETV 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F KG+NLY ++     ++K             +IL EG+ DV++  +A V+NVV+++GT
Sbjct: 229 IFKKGENLYQYYENQAEIRKK----------QTVILHEGFFDVMASFKAQVKNVVATMGT 278

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
            LT    RLL KL+ +I++ +DGD  G  A    +++         +V  ++     DPD
Sbjct: 279 NLTSVHTRLLKKLTDKIIIAYDGDKAGKTAT---LEIGTFLQKNNFQVQILVFPNNLDPD 335

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +I+  G   +++L+      +      + +                    +      ++
Sbjct: 336 EYIKTEGPEKYQRLL---TDDLKDFLALKVDLICQKMDYYNQTQTKKELQKLFKSSSFEI 392

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y + ++ + Q                  K  +        Q+L              
Sbjct: 393 KIIYQEYLQKKYQLTVN------LNSQVSIDKTPKPLYIAQTKQQLNAIKFDIKIEIIIE 446

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL---PEEI 537
            L  AA   T   +P       +      +++ +   L +++ + + +         EEI
Sbjct: 447 LLLNAAFFKT--QNPKTFAIIKKTPG---FNDLQCNCLLNYIKNYYKKNPQQNYIPWEEI 501

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                +    +LL  +++            +     +   Y + L +  +     ++  E
Sbjct: 502 KNTTFKENIDDLLTSIEKHHFFQMQKRPLLKDKEGKIFSNYIKELEIRDKIEQKQQKINE 561

Query: 598 IEKQIAQVTAKGE 610
           +  ++ Q+    +
Sbjct: 562 LNDKLLQIDNTEK 574


>gi|197294658|ref|YP_001799199.1| DNA primase [Candidatus Phytoplasma australiense]
 gi|171853985|emb|CAM11948.1| DNA primase [Candidatus Phytoplasma australiense]
          Length = 582

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 144/618 (23%), Positives = 250/618 (40%), Gaps = 57/618 (9%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           +  I+++     I  L  ++V   +   N     Y   CPFHDEKTPSF  +  K    C
Sbjct: 3   KQLIQEINEKTSIVELAQEFVQLKKSGKN-----YMGLCPFHDEKTPSFSVSPEKNIAVC 57

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
            SC   G+ + F   +   SF E+V +L A  G+         + K+     L  +++ A
Sbjct: 58  MSCKKGGNPVFFYQNIKNISFREAVAQLGARLGIA----SLSFDSKKDKHAHLYEIMKEA 113

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
           T+FF   LK   +++   YL  RG+D   I  FKLGYAP+  Y  R    +  F    + 
Sbjct: 114 TEFFQIQLK--HNEKALQYLKTRGLDEKIITHFKLGYAPNWSYLSRYLTEETKFEYCDLK 171

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
              L+   + +   YD F+NRLIFPI +  GQ+IAF  R+L   +  KYLNSPET+LF K
Sbjct: 172 ALSLVNQNEQTGKFYDFFQNRLIFPITNLNGQIIAFSSRSL-TDQIPKYLNSPETVLFKK 230

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
           G+ LY +F     ++K             IIL EG+ DV+S  + GV+NVV+++GT LT+
Sbjct: 231 GEVLYQYFENQAEIRKK----------ETIILHEGFFDVISSFKVGVKNVVATMGTNLTQ 280

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             L+LL KL+ +I++ +DGD  G ++A   + +          V  +      DPD +I+
Sbjct: 281 NHLKLLSKLAQKIIIAYDGDASGKKSA---LSIGNTLQQKNFDVKILDFPNNLDPDEYIK 337

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             G   + +L+      +      + +           +        +   +D   +  Y
Sbjct: 338 TEGAEKYHQLLTN---HLTDFLTLQIDLICKKISWNNRKKIEKELKMLFQNQDLATKTVY 394

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              +  + Q      + +          +    + K                      +E
Sbjct: 395 QSYLAQKYQLFIDFNVQQQELIIPTLISSQNTINYKK-------------------FDKE 435

Query: 485 AALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI--HQRL 541
             +L+  IN+ +  ++ YQ     + Y +  +      + + +              ++ 
Sbjct: 436 IHILIEFINNRSFFEKNYQINNDALVYSDVNVSYFIEEIKTYYQNNLLKNSIPWNHLEKN 495

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                  L++++         +     +   +  + Y Q     K  + L  +  ++  +
Sbjct: 496 DNESLHPLIEEIKN-----HHFFQAKISLDQNTFEKYIQDFKNAKTIQELKEEINKL--R 548

Query: 602 IAQVTAKGEAEKTAILIS 619
           I     +   EKT  L  
Sbjct: 549 INIKMHEDLKEKTQYLYQ 566


>gi|294155543|ref|YP_003559927.1| DNA primase [Mycoplasma crocodyli MP145]
 gi|291599964|gb|ADE19460.1| DNA primase [Mycoplasma crocodyli MP145]
          Length = 660

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 141/664 (21%), Positives = 267/664 (40%), Gaps = 58/664 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           N P++ I D+L    I  +IG ++   ++       D+   CPFH + TPS + +  K  
Sbjct: 3   NIPQEVIDDILHSSDIVAVIGNFLTLTKKGK-----DFVGLCPFHSDNTPSMNVSSEKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDL 117
           + CFSC+V G+ ++FL       +IE+++ LA +        +           + QT +
Sbjct: 58  FKCFSCNVGGNAIAFLMKFKNFKYIEAIEYLAKLINYDYDFSNILKVSNKPIYNQTQTLI 117

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           I  ++ A   + +++ N  D  +  YLD+RG+ ++ +++F +G+AP         ++   
Sbjct: 118 IDTLKAANLTYKNNIFN--DDEVKKYLDKRGLTTNILDVFNIGFAP------YNGIKHTL 169

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
             E    E  L   G  +  + +  R R+ F I + +G VI F GR++   +  KY+NSP
Sbjct: 170 IKEFAFNEFELKKAGIINNENNEILRKRITFAISNEQGDVIGFSGRSI-GDDKPKYINSP 228

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET +F K   LYN+F A   +          N    II+ EG+MD ++L +  V+NVVS 
Sbjct: 229 ETNVFKKNSILYNYFNAKESI----------NLKKQIIITEGFMDTIALYKCDVKNVVSL 278

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           +G AL+++ L LL      ++L  D D  GL A    I +    +     V  V+ +  +
Sbjct: 279 MGVALSKHHLHLLKN--NEVILFLDNDSAGLNATKSTILM---LIKENINVKVVINNHKK 333

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC--INHI 415
           DPD  +  YG       +      +D ++    ++   +      + +           +
Sbjct: 334 DPDEILNFYGSKTLTDTLNNLTSGIDFIYDLLIKSYGLDKEITSQKAKSFCTEFANYYFL 393

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            D  LR +++  I   L          +  +  +  K   + D    S+  + S+     
Sbjct: 394 LDNDLRGFFANKINKSLGFDINSINHNNEVHNNFDNKINSYIDDVKTSEIFLGSNQYNST 453

Query: 476 LSKKPSLR------EAALLLTLINHPAILQEQYQELAD---IRYDNNELQKLWSFLFSDF 526
              K             ++  L+ +P ++   +        +   N         + S +
Sbjct: 454 KQYKNKNVIYNVHPMNIIVKFLLENPKLVSIYFNNSIKPLGLDLKNKYQFAFIQKIKSIY 513

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD----VRQGYQQAL 582
                   EEI Q+L  +     L+ L  +       +    + I+D        Y Q  
Sbjct: 514 E---LVDNEEIKQKLINKLKIIFLRSLSVEYTVDDFDTDCKNSAIIDNYNFNESDYIQEK 570

Query: 583 ALYKRFRLLSRQKEEIEKQIA-QVTAKGE------AEKTAILISILHEVHIQIHQIESQE 635
             Y     +S   + IE  +     ++G+       + ++ L   L     ++ ++ +Q 
Sbjct: 571 RAYDNITTISIDIDAIENIVKGSQDSEGDNKVKNKKDFSSELEKDLRSKLSKVEKMYNQF 630

Query: 636 AMIE 639
           A+ E
Sbjct: 631 ALKE 634


>gi|203288140|ref|YP_002223155.1| DNA primase [Borrelia recurrentis A1]
 gi|201085360|gb|ACH94934.1| DNA primase [Borrelia recurrentis A1]
          Length = 591

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 130/640 (20%), Positives = 242/640 (37%), Gaps = 59/640 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y +  I  +   + I N+I ++V   +         Y   CPFH E+TPSF    S+G
Sbjct: 1   MEYAK-IIDLIKQRVDIVNIISEHVSLVKSGA-----FYKGLCPFHAERTPSFTITPSQG 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---- 116
            +YCF C   GD + FL  +   ++ ++V  L    G+        +  K KI       
Sbjct: 55  LFYCFGCKKGGDVVKFLMDIEKLNYNDAVDSLCTKIGIEYDSATRSMGIKRKIHDKTLIS 114

Query: 117 -LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDS--HAIEMFKLGYAPDSRYSLREHL 173
            +  L       F   L N +    + + + R          +  L      + S  + L
Sbjct: 115 EIYNLNAKLIKVFVFFLNNNQKILSYIFQERRISREIVDLFNIGYLLCDVVGKSSFYDFL 174

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             KG+S   + ++GL          +     RLIFPI+  +G V+ FGGR L K    KY
Sbjct: 175 VSKGYSSSILSKSGLFASRREK---FSILSGRLIFPIKDFKGNVVGFGGRILGKNNGSKY 231

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           +N  ET +F K + LY F+  L+ ++           +  IIL EGY+DVL+   AG++ 
Sbjct: 232 INLSETRVFKKRELLYGFYEGLSMIK----------ETRSIILTEGYIDVLAFFTAGIKI 281

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            VS+LGT+ +   L L+ + + +I++CFD D  GL A +KA  + L        V+ + +
Sbjct: 282 AVSTLGTSFSTQHLALIKRYADKILICFDDDMAGLVATFKAYQICLPF---NIDVSVIRM 338

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP   ++  G +    ++ +S    + L ++ +     N   +   +     N I 
Sbjct: 339 KYGVDPADVLKNKGVSVLSNMVNDSCDAFEYLLEKYSLKYDLNKTTDLNSMVNLFINLIG 398

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  R      +  +L    +    ++                         +S  K
Sbjct: 399 LSSTNTQRDLLLLKLESKLGVKLETLRKDYYSMREKK----------------AIASYKK 442

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
              S + +  E  LL+ L+          + + D    + +++K++    + F   K F 
Sbjct: 443 NACSYEVNTYERYLLVALLKDFNYFTIIRRNINDSDLYDIDVKKIFVCFENLFDNNKSFS 502

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L             +    + ++         +V     + +    + R +  
Sbjct: 503 LFNLKELLKN-----------KYGSISEIFFENMLRVEFEVDDEMVKQILFAIKKRKVEN 551

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILI---SILHEVHIQIHQ 630
           +    ++ I    +     +   L+        + I +++
Sbjct: 552 RILAFKEMIKNYVSIDAKAQIRELMFLNMQRENLRIYLNE 591


>gi|313158452|gb|EFR57847.1| DNA primase [Alistipes sp. HGB5]
          Length = 1062

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 125/475 (26%), Positives = 218/475 (45%), Gaps = 34/475 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            P   I  +L    I ++IG + V   R   N     Y  CCPFH EKTPSF  +  KG 
Sbjct: 2   IPEYVIDQILSK-DIVSIIGGEGVSLKRAGVN-----YECCCPFHKEKTPSFKVSPVKGI 55

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIR 119
           + CF C  KG+ +SF+  L   +F E+V+ LA    +      + P+ ++    ++ +  
Sbjct: 56  FTCFGCSAKGNAISFVMMLYNMTFPEAVEYLAKKLNIEYKAEELTPEQKEARFRRSRIFE 115

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           + ++A ++F  S K +   + +    ERG     I+   +G+AP  +   RE+  QKG+ 
Sbjct: 116 INQIALEYFRESYKQSLPAQKYAT-KERGFKEETIDNMLIGFAP-YKGGFREYATQKGYK 173

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES---VKYLNS 236
           E+ +I+A L+   +   + YD FR RL+F IR   G ++ F GR + K       KY+N+
Sbjct: 174 EQLLIDADLVRRSERDGSLYDTFRGRLMFTIRDRTGNIVGFSGRLMDKENPKKLPKYINT 233

Query: 237 PETILFHKGKNLYNFFG-ALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
            +T ++ KG++L+ +F  A                   + LVEG  D + + Q GV N V
Sbjct: 234 GDTAVYKKGEHLFAYFESARQAAA-----------VRTMNLVEGNPDAIRMHQIGVDNTV 282

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           + LGTALT  Q+ L+ K++  +++  D DD G +A  K  + +L     G  V  + +  
Sbjct: 283 APLGTALTPKQIELIKKVADTVIIIGDMDDAGQKAVVKNAETML---RAGLAVRVMEIKD 339

Query: 356 G-EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
             +DPD + R Y K   E L   +   +  L     +    N+  E+  +   +   +  
Sbjct: 340 NYKDPDDYFRQYSKGYEELLSNSTTDFIPWLCAH--KMEGKNSQTEQIAVISEVCQLLAL 397

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
            +D+     Y        +   +K  T      +  ++ A+ + ++  S+ ++  
Sbjct: 398 CRDESTVNMYLDMFAREYKN--RKIWTAELQKIQLERERAQRKKEESYSEDMISE 450


>gi|15606650|ref|NP_214030.1| DNA primase [Aquifex aeolicus VF5]
 gi|9910814|sp|O67465|PRIM_AQUAE RecName: Full=DNA primase
 gi|2983878|gb|AAC07430.1| DNA primase [Aquifex aeolicus VF5]
          Length = 498

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 140/522 (26%), Positives = 228/522 (43%), Gaps = 42/522 (8%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
             I +L   I I ++I +Y++ ++  +N     Y   CPFH + TPSF+ + SK  + CF
Sbjct: 3   SDIDELRREIDIVDVISEYLNLEKVGSN-----YRTNCPFHPDDTPSFYVSPSKQIFKCF 57

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
            C V GD + F+S     S+ E+   LA   G  L        +K      +   ++   
Sbjct: 58  GCGVGGDAIKFVSLYEDISYFEAALELAKRYGKKL------DLEKISKDEKVYVALDRVC 111

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
           DF+  SL   R+     Y+  RGID      F LGYAP S   ++     K     +   
Sbjct: 112 DFYRESLLKNREASE--YVKSRGIDPKVARKFDLGYAPSSEALVKVL---KENDLLEAYL 166

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
               +         D F  R++ PI+  RG+VI FGGR + + +S KY+NSP++ +F KG
Sbjct: 167 ETKNLLSPTKGVYRDLFLRRVVIPIKDPRGRVIGFGGRRIVEDKSPKYINSPDSRVFKKG 226

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
           +NL+  + A  Y++             F ILVEGY D+L L   G++NVV+ LGTALT+ 
Sbjct: 227 ENLFGLYEAKEYIK----------EEGFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQN 276

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
           Q  LL K + ++ + +DGDD G +A   AI L    L  G  V  V L  G DPD FI+ 
Sbjct: 277 QANLLSKFTKKVYILYDGDDAGRKAMKSAIPL---LLSAGVEVYPVYLPEGYDPDEFIKE 333

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
           +GK    +LI  S  L + L K           +   E     +  +  I D   R+  +
Sbjct: 334 FGKEELRRLINSSGELFETLIKTAR--------ENLEEKTREFRYYLGFISDGVRRFALA 385

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
                + +   +  + +     +  +     +++      +     +  ++       + 
Sbjct: 386 SEFHTKYKVPMEILLMKIEKNSQEKEIKLSFKEKIFLKGLIELKPKIDLEVLNLSPELKE 445

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             +  L     +L +       + Y  + L+KL++ +  D  
Sbjct: 446 LAVNALNGEEHLLPK-----EVLEYQVDNLEKLFNNILRDLQ 482


>gi|203284606|ref|YP_002222346.1| DNA primase [Borrelia duttonii Ly]
 gi|201084049|gb|ACH93640.1| DNA primase [Borrelia duttonii Ly]
          Length = 591

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 129/640 (20%), Positives = 240/640 (37%), Gaps = 59/640 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y +  I  +   + I N+I ++V   +         Y   CPFH E+TPSF    S+G
Sbjct: 1   MEYAK-IIDLIKQRVDIVNIISEHVSLVKSGA-----FYKGLCPFHAERTPSFTITPSQG 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---- 116
            +YCF C   GD + FL  +   ++ ++V  L    G+        +  K KI       
Sbjct: 55  LFYCFGCKKGGDVVKFLMDIEKLNYNDAVDSLCTKIGIEYDSATRSMGIKRKIHDKTLIS 114

Query: 117 -LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDS--HAIEMFKLGYAPDSRYSLREHL 173
            +  L       F   L N +    +   + R          +  L      + S  + L
Sbjct: 115 EIYNLNAKLIKVFVFFLNNNQKILSYILQERRISREIVDLFNIGYLLCDVVGKSSFYDFL 174

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             KG+S   + ++GL          +     RLIFPI+  +G V+ FGGR L K    KY
Sbjct: 175 VSKGYSSSILSKSGLFASRREK---FSILSGRLIFPIKDFKGNVVGFGGRILGKNNGSKY 231

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
           +N  ET +F K + LY F+  L+ ++           +  IIL EGY+DVL+   A ++ 
Sbjct: 232 INLSETRVFKKRELLYGFYEGLSMIK----------ETRSIILTEGYIDVLAFFTADIKI 281

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            VS+LGT+ +   L L+ + + +I++CFD D  GL A +KA  + L        V+ + +
Sbjct: 282 AVSTLGTSFSTQHLALIKRYADKILICFDDDMAGLVATFKAYQICLPF---NIDVSVIRM 338

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP   ++  G +    ++ +S    + L ++ +     N   +   +     N I 
Sbjct: 339 KYGVDPADVLKNKGVSVLSNMVNDSCDAFEYLLEKYSLKYDLNKTTDLNSMVNLFINLIG 398

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                  R      +  +L    +    ++                         +S  K
Sbjct: 399 LSSTNTQRDLLLSKLESKLGVKLETLRKDYYSMREKK----------------AIASYKK 442

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
              S + +  E  LL+ L+          + + D    + +++K++    + F   K F 
Sbjct: 443 NACSYEVNTYERYLLVALLKDFNYFTIIRRNINDSDLYDIDVKKIFVCFENLFDNNKSFS 502

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L             +    + ++         +V     + +    + R +  
Sbjct: 503 LFNLKELLKN-----------KYGSISEIFFENMLRVEFEVDDEMVKQILFAIKKRKVEN 551

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILI---SILHEVHIQIHQ 630
           +    ++ I    +     +   L+        + I +++
Sbjct: 552 RILAFKEMIKNYVSIDAKAQIRELMFLNMQRENLRIYLNE 591


>gi|218249623|ref|YP_002375210.1| hypothetical protein BbuZS7_0733 [Borrelia burgdorferi ZS7]
 gi|218164811|gb|ACK74872.1| conserved hypothetical protein [Borrelia burgdorferi ZS7]
          Length = 593

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 127/599 (21%), Positives = 236/599 (39%), Gaps = 50/599 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y +  +  +     I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G
Sbjct: 1   MKYLQ-TVASIKSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQG 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQT 115
           ++YCF C   GD + FL  +   ++ ++++ L   +G+      +        + + + +
Sbjct: 55  YFYCFGCKKGGDVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVS 114

Query: 116 DLIRLIEV---ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172
            +  L         FF     +   K L Y L  R I    +++F+LGY P +  +  E 
Sbjct: 115 KIYSLNSRLINTIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLEL 170

Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
                                 +         RLIFPI+  +G V+ FGGR L  G+  K
Sbjct: 171 HDFLVSKGYSSEVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSK 229

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           Y+N  ET +F K + LY F+     ++          S+  +ILVEGY+DVL+   +G++
Sbjct: 230 YINLGETEVFKKRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIK 279

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
             VS+LGTA ++  L L+ + +  I+  FDGDD GL A  KA  + L        V+ V 
Sbjct: 280 RAVSTLGTAFSKEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVR 336

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           +  G DP   ++  G  + +K++       + L    +     N   +   +     N I
Sbjct: 337 MDFGTDPADILKSKGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLI 396

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           N  K    +  +   + ++L       + ++      +  +   R+    +         
Sbjct: 397 NLSKVDTQKKIFLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY----- 451

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
                      E  L++ L+ + +      + + D    N + +K++    + F   K F
Sbjct: 452 -----------ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKVFMCFENLFENNKDF 500

Query: 533 LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              ++ + L +  +      +++     +            +  R+   + L   KR+ 
Sbjct: 501 SLMDLKKNLKDTYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLCKKRYD 559


>gi|299142809|ref|ZP_07035937.1| CHC2 zinc finger protein [Prevotella oris C735]
 gi|298575677|gb|EFI47555.1| CHC2 zinc finger protein [Prevotella oris C735]
          Length = 1106

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 104/470 (22%), Positives = 193/470 (41%), Gaps = 61/470 (12%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I  +   + I +++  YVD  +   N     Y   CPFH + TPSF  + +KG  
Sbjct: 2   ISKQTIDRVFNRVNIVDVVSDYVDLKKSGVN-----YKGLCPFHHDHTPSFVVSPAKGIA 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE----KIQTDLI 118
           +CF C   G+ + F+    G +F E++ +LA    + +     K   +E    + +  + 
Sbjct: 57  HCFVCGGGGNAVKFVMQKEGYTFPEAICKLAKKYNIEVEEDTEKRSDEELRVMQKRESMF 116

Query: 119 RLIEVATDFFHHSLK--NARDKRLHYYLDERGID-----------------SHAIEMFKL 159
            + E  T F+   +K   A+ K    Y++ R                        E+ ++
Sbjct: 117 IIYEAVTQFYREQIKKDTAQAKAAREYVERRWNSRVVVDDKKKKKTFDDEDRDFSEIKQI 176

Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219
           GYAPD+  +L    R KG+  + + EAGL I   +     D +RNR++ PI    G+VIA
Sbjct: 177 GYAPDAWDALVNFARAKGYDLKLMEEAGL-IKVSSKGNLIDFYRNRIMIPITDKYGRVIA 235

Query: 220 FGGRTLSKG-ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278
           F  RT+    ++ KY+N+ ++ ++ KG  L+    A N               + +  VE
Sbjct: 236 FTARTMQDDADTAKYINNKDSFMYSKGSTLFGLDIARNEA----------IQQNKVYCVE 285

Query: 279 GYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR------IVLCFDGDDPGLRA-- 330
           G  D + L    ++N V++LGTA T+   ++L +L  +      +    D D    ++  
Sbjct: 286 GAPDAMKLQSLRIENTVAALGTAWTKAHFQVLRRLFGKSNSNATVCWIPDSDQKAGQSLG 345

Query: 331 --AYKAIDLVLCHLIPGNRVNFVLLSRGE-----DPDSFIRCYGKTAFEKLIVESLPLVD 383
                 +      +  G RV    + + +     D DS+I        + L  +  P+  
Sbjct: 346 PGFLAVMKNGKLAMEEGFRVTVKEIPQEKVGMKADADSYISSKAV--LDDLEEQDFPI-- 401

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             W  E   +  +   ER +    +   +  I D+  +  + + + ++  
Sbjct: 402 --WYAEKVLKKDDNTSERTDKIKEVCAIVILISDEYTQNAFIEKLANKFG 449


>gi|216263403|ref|ZP_03435398.1| conserved hypothetical protein [Borrelia afzelii ACA-1]
 gi|215980247|gb|EEC21068.1| conserved hypothetical protein [Borrelia afzelii ACA-1]
          Length = 593

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 136/608 (22%), Positives = 255/608 (41%), Gaps = 57/608 (9%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +     I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   
Sbjct: 10  IKAKFDIVAIVEQYIKLVKSGS-----TYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKS 64

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV-- 123
           GD + FL  +   ++ ++++ L    GV      +     K  + + I + +  L     
Sbjct: 65  GDVIGFLMDMEKINYNDALKILCEKFGVYYDDLKISRESVKKNENKDIVSKIYSLNSRLI 124

Query: 124 -ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR---QKGFS 179
               FF     N   K L Y L  R I    +++F+LGY P +     E       KG+S
Sbjct: 125 NTIKFF----LNKNKKALDYVLKSRAISKEVVDLFELGYLPLNVKDGLELHGFLVSKGYS 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            E + ++GL    +  A+       RLIFPI+  +G V+ FGGR L  G+  KY+N  ET
Sbjct: 181 SEILKKSGLFSKINPKASI---LSQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLSET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K + LY F+  L+ ++          S+  +ILVEGY+DVL+   +G++  VS+LG
Sbjct: 237 EVFKKKELLYGFYEGLDEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ ++  L L+ + +  I+  FDGDD GL A  KA  + L        V+ V +  G DP
Sbjct: 287 TSFSKEHLVLIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVKMDFGRDP 343

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              ++  G+++ ++++     + D L    +     N   +   +     N IN  K   
Sbjct: 344 ADVLKSEGESSLQEILNNRCDVFDYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDA 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  +   + ++L       +                +D     +R+   +  +   +  
Sbjct: 404 QKNIFLDKLSNKLGIGVTTLL----------------KDYYRIKERVAVDNNKRNLYAHN 447

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  L++ L+ + +      + + D    + + +K++    + F   + F   ++ +
Sbjct: 448 DDSYERYLIVALLKNFSYFSIIRRNIIDSDLIDVDARKIFMCFENLFENNEDFSLMDLKR 507

Query: 540 RLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            L +  +      +++     +    +       +  R+    +  L  + R +      
Sbjct: 508 NLKDNYKISEFFFEEILNSEFEVDDETLVHVLLAIKRRK--LDSRVLLCKKRCIEDSLVN 565

Query: 598 IEKQIAQV 605
            + QI ++
Sbjct: 566 AKIQINEL 573


>gi|15595055|ref|NP_212844.1| DNA primase (dnaG) [Borrelia burgdorferi B31]
 gi|9910812|sp|O51653|PRIM_BORBU RecName: Full=DNA primase
 gi|2688648|gb|AAC67062.1| DNA primase (dnaG) [Borrelia burgdorferi B31]
          Length = 523

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 127/543 (23%), Positives = 230/543 (42%), Gaps = 53/543 (9%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
                I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   G
Sbjct: 11  KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123
           D + FL  +   ++ ++++ L   +G+      +        + + + + +  L      
Sbjct: 66  DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL---REHLRQKGFSE 180
              FF     +   K L Y L  R I    +++F+LGY P +  +     + L  KG+S 
Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E + ++GL    +           RLIFPI+  +G V+ FGGR L  G+  KY+N  ET 
Sbjct: 182 EVLRKSGLFSKTNPK---VSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETE 237

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K + LY F+     ++          S+  +ILVEGY+DVL+   +G++  VS+LGT
Sbjct: 238 VFKKRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGT 287

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A ++  L L+ + +  I+  FDGDD GL A  KA  + L        V+ V +  G DP 
Sbjct: 288 AFSKEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGTDPA 344

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++  G  + +K++       + L    +   + N   +   +     N IN  K    
Sbjct: 345 DVLKSEGVDSLQKILNNRCDAFEYLLDVYSNKYNLNKTVDLNAMINLFLNLINLSKVDTQ 404

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  +   + ++L       + ++      +  +   R+    +                 
Sbjct: 405 KKIFLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY------------- 451

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  L++ L+ + +      + + D    N + +K++    + F   K F   ++ + 
Sbjct: 452 ---ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKVFMCFENLFENNKDFSLMDLKKN 508

Query: 541 LCE 543
           L +
Sbjct: 509 LKD 511


>gi|111115541|ref|YP_710159.1| DNA primase [Borrelia afzelii PKo]
 gi|110890815|gb|ABH01983.1| DNA primase [Borrelia afzelii PKo]
          Length = 593

 Score =  247 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 135/608 (22%), Positives = 254/608 (41%), Gaps = 57/608 (9%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +     I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   
Sbjct: 10  IKAKFDIVAIVEQYIKLVKSGS-----TYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKS 64

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV-- 123
           GD + FL  +   ++ ++++ L    GV      +     K  + + I + +  L     
Sbjct: 65  GDVIGFLMDMEKINYNDALKILCEKFGVYYDDLKISRESVKKNENKDIVSKIYSLNSRLI 124

Query: 124 -ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR---QKGFS 179
               FF     N   K L Y L  R I    +++F+LGY P +     E       KG+S
Sbjct: 125 NTIKFF----LNKNKKALDYVLKSRAISKEVVDLFELGYLPLNVKDGLELHGFLVSKGYS 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            E + ++GL    +  A+       RLIFPI+  +G V+ FGGR L  G+  KY+N  ET
Sbjct: 181 SEILKKSGLFSKINPKASI---LSQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLSET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K + LY F+  L+ ++          S+  +ILVEGY+DVL+   +G++  VS+LG
Sbjct: 237 EVFKKKELLYGFYEGLDEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ ++  L L+ + +  I+  FDGDD GL A  KA  + L        V+ V +  G DP
Sbjct: 287 TSFSKEHLVLIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVKMDFGRDP 343

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              ++  G+++ ++++     + D L    +     N   +   +     N IN  K   
Sbjct: 344 ADVLKSEGESSLQEILNNRCDVFDYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDA 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  +   + ++L       + ++      +  +   R+    +                
Sbjct: 404 QKNIFLDKLSNKLGIGVTTLLKDYYRIKERFAVDNNKRNLYAHNDDSY------------ 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  L++ L+ + +      + + D    + + +K++    + F   + F   ++ +
Sbjct: 452 ----ERYLIVALLKNFSYFSIIRRNIIDSDLIDVDARKIFMCFENLFENNEDFSLMDLKR 507

Query: 540 RLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            L +  +      +++     +    +       +  R+    +  L  + R +      
Sbjct: 508 NLKDNYKISEFFFEEILNSEFEVDDETLVHVLLAIKRRK--LDSRVLLCKKRCVEDSLVN 565

Query: 598 IEKQIAQV 605
            + QI ++
Sbjct: 566 AKIQINEL 573


>gi|224533386|ref|ZP_03673980.1| DNA primase [Borrelia burgdorferi CA-11.2a]
 gi|224513551|gb|EEF83908.1| DNA primase [Borrelia burgdorferi CA-11.2a]
          Length = 593

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 125/588 (21%), Positives = 231/588 (39%), Gaps = 49/588 (8%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
                I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   G
Sbjct: 11  KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123
           D + FL  +   ++ ++++ L   +G+      +        + + + + +  L      
Sbjct: 66  DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
              FF     +   K L Y L  R I    +++F+LGY P +  +  E            
Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
                      +         RLIFPI+  +G V+ FGGR L  G+  KY+N  ET +F 
Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K + LY F+     ++          S+  +ILVEGY+DVL+   +G++  VS+LGTA +
Sbjct: 241 KKEILYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           +  L L+ + +  I+  FDGDD GL A  KA  + L        V+ V +  G DP   +
Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGTDPADIL 347

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +  G  + +K++       + L    +     N   +   +     N IN  K    +  
Sbjct: 348 KSKGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   + ++L       + ++      +  +   R+    +                    
Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  L++ L+ + +      + + D    N + +K++    + F   K F   ++ + L +
Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKIFMCFENLFENNKDFSLMDLKKNLKD 511

Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
             +      +++     +            +  R+   + L   KR+ 
Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLSKKRYD 559


>gi|312149455|gb|ADQ29526.1| DNA primase [Borrelia burgdorferi N40]
          Length = 593

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 125/588 (21%), Positives = 232/588 (39%), Gaps = 49/588 (8%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
                I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   G
Sbjct: 11  KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123
           D + FL  +   ++ ++++ L   +G+      +        + + + + +  L      
Sbjct: 66  DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
              FF     +   K L Y L  R I    +++F+LGY P +  +  E            
Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
                      +         RLIFPI+  +G V+ FGGR L  G+  KY+N  ET +F 
Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K + LY F+     ++          S+  +ILVEGY+DVL+   +G++  VS+LGTA +
Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           +  L L+ + +  I+  FDGDD GL A  KA  + L        V+ V +  G DP   +
Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGSDPADIL 347

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +  G  + +K++       + L    +     N   +   +     N IN  K    +  
Sbjct: 348 KSEGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   + ++L       + ++      +  +   R+    +                    
Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  L++ L+ + +      + + D    N + +K++    + F   K F   ++ ++L +
Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKIFMCFENLFENNKDFSLMDLKKKLKD 511

Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
             +      +++     +            +  R+   + L   KR+ 
Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLCKKRYD 559


>gi|224532357|ref|ZP_03672987.1| DNA primase [Borrelia burgdorferi WI91-23]
 gi|224512664|gb|EEF83035.1| DNA primase [Borrelia burgdorferi WI91-23]
          Length = 593

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 129/632 (20%), Positives = 246/632 (38%), Gaps = 69/632 (10%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
                I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   G
Sbjct: 11  KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123
           D + FL  +   ++ ++++ L   +G+      +        + + + + +  L      
Sbjct: 66  DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
              FF     +   K L Y L  R I    +++F+LGY P +  +  E            
Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
                      +         RLIFPI+  +G V+ FGGR L  G+  KY+N  ET +F 
Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K + LY F+     ++          S+  +ILVEGY+DVL+   +G++ VVS+LGTA +
Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRVVSTLGTAFS 290

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           +  L L+ + +  I+  FDGDD GL A  KA  + L        V+ V +  G DP   +
Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGTDPADIL 347

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +  G  + +K++       + L    +     N   +   +     N IN  K    +  
Sbjct: 348 KSKGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   + ++L       + ++      +  +   R+    +                    
Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  L++ L+ + +      + + D    N + +K++    + F   K F   ++ + L +
Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKIFMCFENLFENNKDFSLMDLKKNLKD 511

Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             +      +++                      +       L      + R+K +    
Sbjct: 512 TYKVSEFFFEEILNS-------------------EFEVDDEMLIHILLAIKRRKLDFRVL 552

Query: 602 IAQVTAKGEAEKTAILI-SILHEVHIQIHQIE 632
           +++    G++   A +  + L  +++Q   ++
Sbjct: 553 LSKKRYDGDSLVNAKIQINELMFLNMQRKNLK 584


>gi|225548888|ref|ZP_03769865.1| DNA primase [Borrelia burgdorferi 94a]
 gi|225370491|gb|EEG99927.1| DNA primase [Borrelia burgdorferi 94a]
          Length = 593

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 125/588 (21%), Positives = 231/588 (39%), Gaps = 49/588 (8%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
                I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   G
Sbjct: 11  KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123
           D + FL  +   ++ ++++ L   +G+      +        + + + + +  L      
Sbjct: 66  DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
              FF     +   K L Y L  R I    +++F+LGY P +  +  E            
Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
                      +         RLIFPI+  +G V+ FGGR L  G+  KY+N  ET +F 
Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K + LY F+     ++          S+  +ILVEGY+DVL+   +G++  VS+LGTA +
Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           +  L L+ + +  I+  FDGDD GL A  KA  + L        V+ V +  G DP   +
Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGTDPADIL 347

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +  G  + +K++       + L    +     N   +   +     N IN  K    +  
Sbjct: 348 KSKGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   + ++L       + ++      +  +   R+    +                    
Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  L++ L+ + +      + + D    N + +K++    + F   K F   ++ + L +
Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKIFMCFENLFENNKDFSLMDLKKNLKD 511

Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
             +      +++     +            +  R+   + L   KR+ 
Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLSKKRYD 559


>gi|262376645|ref|ZP_06069873.1| DNA primase [Acinetobacter lwoffii SH145]
 gi|262308355|gb|EEY89490.1| DNA primase [Acinetobacter lwoffii SH145]
          Length = 640

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 141/685 (20%), Positives = 261/685 (38%), Gaps = 116/685 (16%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P+  I  +L    I ++IGQ+V   +         Y  CCPFH EK+PSFH    K 
Sbjct: 1   MAIPQHTIDQILDRTDIVDVIGQFVKLKKTGR-----TYSGCCPFHQEKSPSFHVYRDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI-- 118
           +++CF C   G+ + FL  +   +F+E ++ L++  G+ LP  +    K +  +      
Sbjct: 56  YFHCFGCQANGNAIRFLMDIGSRNFVEVMKDLSSQTGIELPKDNTDSNKLKYKREAAKPK 115

Query: 119 -------------------RLIEVA--------TDF------FHHSLKNARDKRLHYYLD 145
                                   A         +F      F+     + +      + 
Sbjct: 116 IAPAQAAPQAQPQQNNAPTENNSAASTASFDPFAEFQAVEQDFYGDPFASFEHLPMAEVQ 175

Query: 146 ERGIDSHAIEMFKLGYA--PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR 203
           + G     +E     Y     +  S +++ +Q+G + E I    L    ++       F 
Sbjct: 176 QDGNLYDLLENIAQFYERQLPNSPSAQQYFKQRGLTTETIAYWRLGYAPEDWQHLEKAFP 235

Query: 204 NRL------IFPIRSSRGQ------------VIAFGGRT-------LSKGESVKYLNSPE 238
             +           S  G+            +    GR        L+     KY+NSP+
Sbjct: 236 QDIEGLKLLGLIRTSDSGRDFDLLRERVIFPIRDTKGRVVGFGGRALNDEIKPKYINSPD 295

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           + +FHK + LY  +                  +   ++VEGYMDV++L Q G+   V++L
Sbjct: 296 SEVFHKNQLLYGLYEGRK------------QKAQEWLMVEGYMDVIALQQYGIHGAVATL 343

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
           GTA     L +L+K S R+ + FDGD  G +AA + +D+ L  L  G  + F +L    D
Sbjct: 344 GTASNTDHLNILFKQSNRLTIAFDGDAAGQKAARRTLDIALPLLNDGRELKFFVLPADHD 403

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-D 417
           PDS IR  G   F +L+ ++  + D ++   T+N+   TP+ ++++   LKN    +   
Sbjct: 404 PDSLIRREGIENFRRLLEQAPLMSDFVFAHLTQNQDITTPEGKSQVMGELKNLTELLPKH 463

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              RY   Q  R++L            G+ R W+           S ++           
Sbjct: 464 GSFRYLLQQFFREKL------------GFNRKWQPKVNTDASLSFSTKID---------- 501

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  ++  L+NHP +    ++ L  +  ++  L K+ + + +   +     PE  
Sbjct: 502 -----AEEYVIAILMNHPYLYI-HFEPLRALVAEDQLLFKILN-ILNVIFDDLPDDPELS 554

Query: 538 HQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVR---QGYQQALALYKRFRLLS 592
              +          L+ + +    +   S+  +A+ +      +   Q L    + +  S
Sbjct: 555 IYYVLGACAAHHHELQHILQHANVSDYTSSPEQADKLAADFSTKLQYQCLKNKIKSKKFS 614

Query: 593 --RQKEEIEKQIAQVTAKGEAEKTA 615
              + + ++ QI ++  K       
Sbjct: 615 SIAEMKNLKMQIYEIDRKRSMTLLE 639


>gi|216264439|ref|ZP_03436431.1| conserved hypothetical protein [Borrelia burgdorferi 156a]
 gi|215980912|gb|EEC21719.1| conserved hypothetical protein [Borrelia burgdorferi 156a]
          Length = 593

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 125/588 (21%), Positives = 231/588 (39%), Gaps = 49/588 (8%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
                I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   G
Sbjct: 11  KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123
           D + FL  +   ++ ++++ L   +G+      +        + + + + +  L      
Sbjct: 66  DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
              FF     +   K L Y L  R I    +++F+LGY P +  +  E            
Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
                      +         RLIFPI+  +G V+ FGGR L  G+  KY+N  ET +F 
Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K + LY F+     ++          S+  +ILVEGY+DVL+   +G++  VS+LGTA +
Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           +  L L+ + +  I+  FDGDD GL A  KA  + L        V+ V +  G DP   +
Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGSDPADIL 347

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +  G  + +K++       + L    +     N   +   +     N IN  K    +  
Sbjct: 348 KSKGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   + ++L       + ++      +  +   R+    +                    
Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  L++ L+ + +      + + D    N + +K++    + F   K F   ++ + L +
Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKIFMCFENLFENNKDFSLMDLKKNLKD 511

Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
             +      +++     +            +  R+   + L   KR+ 
Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLCKKRYD 559


>gi|57506128|ref|ZP_00372050.1| DNA primase [Campylobacter upsaliensis RM3195]
 gi|57015612|gb|EAL52404.1| DNA primase [Campylobacter upsaliensis RM3195]
          Length = 595

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 142/612 (23%), Positives = 247/612 (40%), Gaps = 47/612 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I+ L     I ++I  +V   R         Y   CPFH ++ PS H N  K FY
Sbjct: 2   IAKDSIELLSQRADILSIISHFVQVRRSGA-----SYVCVCPFHGDRNPSLHINTQKNFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD   F+      +F E+V+++A ++   L     K E K++I+  L  L  
Sbjct: 57  HCFGCGAGGDVFKFVMDFERVNFAEAVEKVAHLSNFTLTYTKEKEENKKEIKHILPLLNA 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               F+  +L  A+ + +  YL +R +    I+ F+LGYA  S       L+ +  S E 
Sbjct: 117 ----FYKQNL--AKHREVLDYLYQRKLSDEDIKKFELGYAT-SNDESLRLLKNEQISNED 169

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
            +  G  I  D     Y  F +R+ FPI   +G ++ FGGRTL+   + KY+NSP++ LF
Sbjct: 170 ALYVG-AIKKDEKGGFYASFIHRITFPIYDYKGLLVGFGGRTLNANNAAKYVNSPQSPLF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y F  A + + K             +I+ EGYMD ++  +AG  N V+ LGTAL
Sbjct: 229 DKARIFYAFHLAKDSIAKQ----------REMIICEGYMDAIAFHKAGFTNAVAVLGTAL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE+ L L+ +   +++LCFD D+ G +AA+++  L+  + I G     VLL  G+DP   
Sbjct: 279 TEHHLPLIRRYEAKVLLCFDNDEAGRKAAFRSAFLLSVNKIDGK---VVLLEGGKDPAEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +          L+  ++ L +   +        +  D++  L            +  +  
Sbjct: 336 VANDEAKKLHALLERAMELGEFYIRELLRGEIHSALDKQKAL--ESVQKYTFSLEPLVAN 393

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  +   L               +   +  +    +    R+    L      +  S 
Sbjct: 394 SYTNLVSKLLG-----VEKNLIVLSKNTSRPPKTPLLETQKSRVHLGELELLSFLRASSE 448

Query: 483 REAALL----LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             A  L     +   H  + ++    LA+   ++ ++++L                 +  
Sbjct: 449 ARALFLTMSDKSCFKHQKLCEKV---LANFGLEDKDIREL-----ELRNLGTITNLNDFL 500

Query: 539 QRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             LC+        L      +       +  + N   +++   +          LS  K 
Sbjct: 501 CLLCKINLAFFNALTITKPHLGLKKQLLSLLDKNAEKLKKQLDENALFEFYKDALSFIKS 560

Query: 597 EIEKQIAQVTAK 608
           E + QI +   K
Sbjct: 561 EKDTQILETRLK 572


>gi|225551851|ref|ZP_03772794.1| DNA primase [Borrelia sp. SV1]
 gi|225371646|gb|EEH01073.1| DNA primase [Borrelia sp. SV1]
          Length = 593

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 126/588 (21%), Positives = 232/588 (39%), Gaps = 49/588 (8%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
                I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   G
Sbjct: 11  KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123
           D + FL  +   ++ ++++ L   +G+      +        + + + + +  L      
Sbjct: 66  DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
              FF     +   K L Y L  R I    +++F+LGY P +  +  E            
Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
                      +         RLIFPI+  +G V+ FGGR L  G+  KY+N  ET +F 
Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K + LY F+  L  ++          S+  +ILVEGY+DVL+   +G++  VS+LGTA +
Sbjct: 241 KRELLYGFYEGLEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           +  L L+ + +  I+  FDGDD GL A  KA  + L        V+ V +  G DP   +
Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGSDPADVL 347

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +  G    +K++       + L    +     N   +   +     N IN  K    +  
Sbjct: 348 KSEGVDFLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   + ++L       + ++      +  +   R+    +                    
Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  L++ L+ + +      + + D    N + +K++    + F   K F   ++ ++L +
Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKVFMCFENLFENNKDFSLMDLKKKLKD 511

Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
             +      +++     +            +  R+   + L   KR+ 
Sbjct: 512 TYKVSEIFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLCKKRYE 559


>gi|226320453|ref|ZP_03796019.1| DNA primase [Borrelia burgdorferi 29805]
 gi|226234095|gb|EEH32810.1| DNA primase [Borrelia burgdorferi 29805]
          Length = 593

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 125/588 (21%), Positives = 232/588 (39%), Gaps = 49/588 (8%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
                I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   G
Sbjct: 11  KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123
           D + FL  +   ++ ++++ L   +G+      +   +    + + + + +  L      
Sbjct: 66  DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGNENKNENKDMVSKIYSLNSRLIN 125

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
              FF     +   K L Y L  R I    +++F+LGY P +  +  E            
Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
                      +         RLIFPI+  +G V+ FGGR L  G+  KY+N  ET +F 
Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K + LY F+     ++          S+  +ILVEGY+DVL+   +G++  VS+LGTA +
Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           +  L L+ + +  I+  FDGDD GL A  KA  + L        V+ V +  G DP   +
Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGSDPADIL 347

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +  G  + +K++       + L    +     N   +   +     N IN  K    +  
Sbjct: 348 KSKGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   + ++L       + ++      +  +   R+    +                    
Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  L++ L+ + +      + + D    N + +K++    + F   K F   ++ + L +
Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKIFMCFENLFENNKDFSLMDLKKNLKD 511

Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
             +      +++     +            +  R+   + L   KR+ 
Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLCKKRYD 559


>gi|221217978|ref|ZP_03589445.1| DNA primase [Borrelia burgdorferi 72a]
 gi|225549987|ref|ZP_03770948.1| DNA primase [Borrelia burgdorferi 118a]
 gi|226321408|ref|ZP_03796935.1| DNA primase [Borrelia burgdorferi Bol26]
 gi|221192284|gb|EEE18504.1| DNA primase [Borrelia burgdorferi 72a]
 gi|225369446|gb|EEG98898.1| DNA primase [Borrelia burgdorferi 118a]
 gi|226233204|gb|EEH31956.1| DNA primase [Borrelia burgdorferi Bol26]
          Length = 593

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 125/588 (21%), Positives = 231/588 (39%), Gaps = 49/588 (8%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
                I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   G
Sbjct: 11  KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123
           D + FL  +   ++ ++++ L   +G+      +        + + + + +  L      
Sbjct: 66  DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
              FF     +   K L Y L  R I    +++F+LGY P +  +  E            
Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
                      +         RLIFPI+  +G V+ FGGR L  G+  KY+N  ET +F 
Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K + LY F+     ++          S+  +ILVEGY+DVL+   +G++  VS+LGTA +
Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           +  L L+ + +  I+  FDGDD GL A  KA  + L        V+ V +  G DP   +
Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGTDPADIL 347

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +  G  + +K++       + L    +     N   +   +     N IN  K    +  
Sbjct: 348 KSKGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   + ++L       + ++      +  +   R+    +                    
Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  L++ L+ + +      + + D    N + +K++    + F   K F   ++ + L +
Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKVFMCFENLFENNKDFSLMDLKKNLKD 511

Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
             +      +++     +            +  R+   + L   KR+ 
Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLCKKRYD 559


>gi|223889341|ref|ZP_03623927.1| DNA primase [Borrelia burgdorferi 64b]
 gi|223885027|gb|EEF56131.1| DNA primase [Borrelia burgdorferi 64b]
          Length = 593

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 125/588 (21%), Positives = 231/588 (39%), Gaps = 49/588 (8%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
                I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   G
Sbjct: 11  KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123
           D + FL  +   ++ ++++ L   +G+      +        + + + + +  L      
Sbjct: 66  DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
              FF     +   K L Y L  R I    +++F+LGY P +  +  E            
Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
                      +         RLIFPI+  +G V+ FGGR L  G+  KY+N  ET +F 
Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K + LY F+     ++          S+  +ILVEGY+DVL+   +G++  VS+LGTA +
Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           +  L L+ + +  I+  FDGDD GL A  KA  + L        V+ V +  G DP   +
Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGTDPADIL 347

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +  G  + +K++       + L    +     N   +   +     N IN  K    +  
Sbjct: 348 KSEGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   + ++L       + ++      +  +   R+    +                    
Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  L++ L+ + +      + + D    N + +K++    + F   K F   ++ + L +
Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKVFMCFENLFENNKDFSLMDLKKNLKD 511

Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
             +      +++     +            +  R+   + L   KR+ 
Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLCKKRYD 559


>gi|331703465|ref|YP_004400152.1| DNA primase [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802020|emb|CBW54174.1| DNA primase [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 612

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 127/640 (19%), Positives = 252/640 (39%), Gaps = 45/640 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I +++  + I ++I  Y+   ++ +N     Y A CPFH++  PS   +  K  Y
Sbjct: 4   ISNEKINEIISQVSIVDVISSYLHLIKKGSN-----YLAICPFHNDSNPSLTISPEKRIY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRLI 121
            CFSC   G+ ++F+       F+ +++ +   A + L       +  K+     + +L 
Sbjct: 59  TCFSCKASGNVINFVKDFEHVDFLTALKTVCDKANISLDEFKNYNQPIKDLEAETIFKLN 118

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             A + F  +L +    +   YL  R I    I+ F++G+A D    ++  L  K ++  
Sbjct: 119 SEANNIFKTTLFSNLGIQALEYLKSRNISIEQIKKFEIGFASDKTNLVQ-KLLDKNYNSL 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            I +A L I  ++    Y  F NR+IFPI+    QVI F GR+ +K    KYLN+ E  +
Sbjct: 178 DIEKANLGIITNSYTKDY--FINRIIFPIKDENNQVIGFSGRSFTKDNEPKYLNTKENKV 235

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K    YN   AL   +   +          II++EG+MDV+SL +  + N ++ +GT+
Sbjct: 236 FKKSHLAYNITSALKISKSLKK----------IIVLEGFMDVISLSKIDINNTIALMGTS 285

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           L+ Y L L  + +  ++L  DGDDPG++     I +    L     V  +      DPD 
Sbjct: 286 LSNYHLNLFKRHNLDVLLFLDGDDPGIQ---ANIKISHQLLKEKINVLVIDNQTNNDPDE 342

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +        +++I + +  V+ L ++       N P++       + N I  + ++ L 
Sbjct: 343 LVN-NNVEYLKQIINQPIHPVNYLIEKLWNKVDINNPNQIENFIKKVLNFIFDLNNEILV 401

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA-----------RHRDQKGPSQRLMQSS 470
                 + +  +   Q          +  K N            +   Q     +    +
Sbjct: 402 ETTINKLVELTKISEQTIKNNLIELKKQSKPNNSFNKNSTTQVFKTNTQTNKVNKQHSKT 461

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ- 529
                + K+    E  + ++L+     L +    +  +   + +++     L + + ++ 
Sbjct: 462 KPNDFIKKEYINAERRIFISLLISDQFLDKIAANVDKM--IHPDIKHATINLINLYNKKI 519

Query: 530 -KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            +     +    L E       K+ +  + ++ L S         +R+            
Sbjct: 520 YQGNDINKAFDLLKEYNLTGFDKKQEEIINNSLLTSIK-------IRESEIDDAFSKLDS 572

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                +   ++K + +   K E  +    I  L     + 
Sbjct: 573 YHNDTEISNLKKLLVESKNKTERFQIWNGIDTLKNKKKKR 612


>gi|195941529|ref|ZP_03086911.1| DNA primase [Borrelia burgdorferi 80a]
          Length = 593

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 125/588 (21%), Positives = 230/588 (39%), Gaps = 49/588 (8%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
                I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   G
Sbjct: 11  KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123
           D + FL  +   ++ ++++ L   +G+      +        + + + + +  L      
Sbjct: 66  DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
              FF     +   K L Y L  R I    +++F+LGY P +  +  E            
Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
                      +         RLIFPI+  +G V+ FGGR L  G+  KY+N  ET +F 
Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K + LY F+     ++          S+  +ILVEGY+DVL+   +G++  VS+LGTA +
Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           +  L L+ + +  I+  FDGDD GL A  KA  + L        V+ V +  G DP   +
Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGTDPADVL 347

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +  G  + +K++       + L    +     N   +   +     N IN  K    +  
Sbjct: 348 KSEGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNTMINLFLNLINLSKLDTQKKI 407

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   + ++L       + +       +  +   R+    +                    
Sbjct: 408 FLDKLSNKLGIGVTTLLKDCYRIKERFVVDNNKRNLYAHNDDSY---------------- 451

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  L++ L+ + +      + + D    N + +K++    + F   K F   ++ + L +
Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKVFMCFENLFENNKDFSLMDLKKNLKD 511

Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
             +      +++     +            +  R+   + L   KR+ 
Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLCKKRYD 559


>gi|315638036|ref|ZP_07893221.1| DNA primase [Campylobacter upsaliensis JV21]
 gi|315481884|gb|EFU72503.1| DNA primase [Campylobacter upsaliensis JV21]
          Length = 595

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 142/609 (23%), Positives = 251/609 (41%), Gaps = 50/609 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +D I+ L     I ++I  +V   R         Y   CPFHD++ PS H N  K FY
Sbjct: 2   IAKDSIELLSQRADILSIISHFVQVRRSGA-----SYVCVCPFHDDRNPSLHINTQKNFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD   F+      +F E+V+++A ++   L     K E K++I+  L  L  
Sbjct: 57  HCFGCGAGGDVFKFVMDFERVNFAEAVEKVAHLSNFTLTYTKEKEENKKEIKHILPLLNA 116

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               F+  +L  A+ + +  YL +R +    I+ F+LGYA  S       L+ +  S E 
Sbjct: 117 ----FYKQNL--AKHREVLDYLYQRKLSDEDIKKFELGYAA-SNDESLRLLKNEQISNED 169

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
            +  G  I  D     Y  F +R+ FPI   +G ++ FGGRTL+   + KY+NSP++ LF
Sbjct: 170 ALYVG-AIKKDERGGFYASFIHRITFPIYDYKGLLVGFGGRTLNANNAAKYVNSPQSPLF 228

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K +  Y F  A + + K             +I+ EGYMD ++  +AG  N V+ LGTAL
Sbjct: 229 DKARIFYAFHLAKDSIAKQ----------REMIICEGYMDAIAFHKAGFTNAVAVLGTAL 278

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           TE+ L L+ +   +++LCFD D+ G +AA+++  L+  + I G     VLL  G+DP   
Sbjct: 279 TEHHLPLIRRYEAKVLLCFDNDEAGRKAAFRSAFLLSVNKIEGK---VVLLEGGKDPAEL 335

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +          L+  ++ L +   +        +   ++  L            +  +  
Sbjct: 336 VANDEAKKLHALLERAMELGEFYIRELLRGEIHSALAKQKAL--ESVQKYTFSLEPLVAN 393

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  +   L               +   +  +    +    R+    L      +  S 
Sbjct: 394 SYTNLVSKLLG-----VEKNLIVLSKNASRPPKTPLLETQKSRVHLGELELLSFLRASSE 448

Query: 483 REAALLLT----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             A  L         H  + ++    LA+   ++ ++++L   L +            + 
Sbjct: 449 ARALFLTMSDKSCFKHQKLCEKV---LANFGLEDKDIREL--ELRNLGTITNLNDFLCLL 503

Query: 539 QRLCERGFGEL--------LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            ++    F  L        LK+    + D        + +   + + Y++AL+  K  R 
Sbjct: 504 CKINLAFFNALTITKPHLGLKKQLLSLLDKNAEKLKKQLDENALFEFYKEALSFIKSERD 563

Query: 591 LSRQKEEIE 599
               +  ++
Sbjct: 564 TQILETRLK 572


>gi|312148380|gb|ADQ31039.1| DNA primase [Borrelia burgdorferi JD1]
          Length = 593

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 125/588 (21%), Positives = 230/588 (39%), Gaps = 49/588 (8%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
                I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   G
Sbjct: 11  KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123
           D + FL  +   ++ ++++ L   +G+      +        + + + + +  L      
Sbjct: 66  DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
              FF     +   K L Y L  R I    +++F+LGY P +  +  E            
Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
                      +         RLIFPI+  +G V+ FGGR L  G+  KY+N  ET +F 
Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           K + LY F+     ++          S+  +ILVEGY+DVL+   +G++  VS+LGTA +
Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           +  L L+ + +  I+  FDGDD GL A  KA  + L        V+ V +  G DP   +
Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGTDPADVL 347

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +  G  + +K++       + L    +     N   +   +     N IN  K    +  
Sbjct: 348 KSEGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNTMINLFLNLINLSKVDTQKKI 407

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   + ++L       + +       +  +   R+    +                    
Sbjct: 408 FLDKLSNKLGIGVTTLLKDCYRIKERFVVDNNKRNLYAHNDDSY---------------- 451

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  L++ L+ + +      + + D    N + +K++    + F   K F   ++ + L +
Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKVFMCFENLFENNKDFSLMDLKKNLKD 511

Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
             +      +++     +            +  R+   + L   KR+ 
Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLSKKRYD 559


>gi|330984018|gb|EGH82121.1| DNA primase [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 629

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 130/633 (20%), Positives = 233/633 (36%), Gaps = 42/633 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+D I  ++    +S +I +Y+   ++       D+   CPFH E +PSF  +  K FY
Sbjct: 23  IPQDIIDRIVSQTDLSEIISRYIKLKKQGA-----DFIGLCPFHREMSPSFTVSPRKQFY 77

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           YCF C   G+ L F+   L  +FI  +Q L+   G+ +       +K++     + + + 
Sbjct: 78  YCFGCGAGGNTLDFMKEYLNKTFIPVIQELSEEVGIDITPYLKSAQKEQLDFQ-IPQALA 136

Query: 123 VATDFFHHSLKNARDKRLH--YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            A +FF + L            YL  R + +   E F LG+A   + ++           
Sbjct: 137 DAQNFFRNELLRNHTDVAVATEYLASRHVSAELSERFGLGFAGYGKRAIDALTEHHEVLI 196

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E  +        + + + +  FR+RL+ P+R  RG+VI   GRTL      KY NS E+ 
Sbjct: 197 EIGLL-----QRNENGSMFSLFRDRLMMPVRDMRGKVIGVSGRTLDPEVKPKYRNSKESA 251

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           LF +   LY  + ++                  + +VEG  DVL+     +    +++G+
Sbjct: 252 LFSRNSVLYGLYESMQA-------YGNSGKIDRVFVVEGQFDVLANHMLDLA-ACAAMGS 303

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID-LVLCHLIPGNRVNFVLLSRGEDP 359
           +++  QLRLL + + R+   FDGD  G +A  +    L+          + + L  G DP
Sbjct: 304 SVSVQQLRLLLRHARRVSFLFDGDQAGRKALIQVGTLLLENITDHEVIFDVLTLPEGVDP 363

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            + +       +  ++ +S P ++             T   RAE      + I+  +D  
Sbjct: 364 HNMV-TEQPDLYRSMLEQSQPWLEAFMSALANGHDLATDRGRAEYASSALDIIHDTRDPL 422

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSK 478
           LR+   Q +       F                  + ++Q    S RL +    +   + 
Sbjct: 423 LRHQAVQKLAANAGLPFDALEERLKSMPAARSGFLKPQEQLNDASIRLARILWDEPLWAS 482

Query: 479 KPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                +  L            E  Q LA   I   +  L  + S      +E    L  +
Sbjct: 483 HIEETQLWL--------EEGDEIIQTLAAWKIDLFSGALDAMPSAEEQRLIESNADLAAD 534

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I      +G    L +    ++   L  +         R     ALAL+          +
Sbjct: 535 ITLNCRNKGGAAALGRRLSGLQGGRLMESLMRDEPETSRAT-AHALALHITGICAGNGLQ 593

Query: 597 EIEK--QIAQVTAKGEAEKTAILISILHEVHIQ 627
            + K   +  +   G         + L  +  +
Sbjct: 594 SLSKTAALGALDDTG-----REKFNSLMRIRRE 621


>gi|294673681|ref|YP_003574297.1| DNA primase [Prevotella ruminicola 23]
 gi|294472363|gb|ADE81752.1| putative DNA primase [Prevotella ruminicola 23]
          Length = 1064

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 109/482 (22%), Positives = 195/482 (40%), Gaps = 41/482 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + +  +    PI +++  Y+   +   N     Y   CPFH +K PSF  + +KG  
Sbjct: 2   IKPETLDKINDQ-PIVDIVSDYITLKKAGVN-----YKGICPFHADKNPSFMVSPAKGIC 55

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRL 120
           +CF C   G+ + F+      +F E+ + +A    +     DP  E+  +++ +  +  +
Sbjct: 56  HCFVCGKGGNGIHFIMEHEHVNFYEACKIIANKFNIEFEEKDPTPEELAEQQKKESMQVI 115

Query: 121 IEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
                +F+   L     +        +      AIE   LGYAP       + ++  G S
Sbjct: 116 YSRVQEFYVKCLHEDTPEAKAMMAYAKHRWSEEAIEERGLGYAPKGNKRFFDFIKSTGLS 175

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPE 238
            E   EAGL I   +  + Y  FR+RL+ P+R   G VI +  RTLS   +  KYLN  +
Sbjct: 176 WELCKEAGL-IAESDDRSEYAFFRDRLMIPVRDRWGNVINYTARTLSDNKDVQKYLNGRD 234

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           ++LFHK   L+    A+    +               LVEG  DV+ + Q GV N V+ L
Sbjct: 235 SLLFHKSSVLFGLDTAMKVGAR----------EELFYLVEGGPDVMKMQQIGVVNTVAPL 284

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA----IDLVLCHLIPGNRVNFVLLS 354
           GTALT+  L  L +  P++    D D PG++A  K     ++      +           
Sbjct: 285 GTALTKEHLHTLKRFHPKLCFIPDADAPGIKAVIKNGRTAMEEGFRVTVKEIPPKPEEEG 344

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G+            ++ +   +   L +  +     N+ F+  + ++  E  + + +  
Sbjct: 345 GGK--------QDADSYFQNREQVKLLAEEDFVLWYANKLFDDIERKSSTETDISDIVKQ 396

Query: 415 IKDQKL--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           I D  +  +  Y+Q        L    + +H+G+   WK        +   ++   ++  
Sbjct: 397 ICDVLILEKDEYTQK------ALLDALVKQHNGHKGLWKNAVNEAKHRRAEEKAKATTKR 450

Query: 473 KG 474
            G
Sbjct: 451 TG 452


>gi|256384214|gb|ACU78784.1| DNA primase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385046|gb|ACU79615.1| DNA primase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455356|gb|ADH21591.1| DNA primase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 612

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 128/640 (20%), Positives = 252/640 (39%), Gaps = 45/640 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I +++  + I ++I  Y+   ++ +N     Y A CPFH++  PS   +  K  Y
Sbjct: 4   ISNEKINEIISQVSIVDVISSYLHLIKKGSN-----YLAICPFHNDSNPSLTISPEKRIY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRLI 121
            CFSC   G+ ++F+       F+ +++ +   A + L       +  K+     + +L 
Sbjct: 59  TCFSCKASGNVINFVKDFEHVEFLTALKTVCDKANISLDEFKNYNQPIKDLEAETIFKLN 118

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             A + F  +L +    +   YL  R I    I+ F++G+A D    ++  L  K ++  
Sbjct: 119 SEANNIFKTTLFSNLGIQALEYLKSRNITIEQIKKFEIGFASDKTNLVQ-KLLDKNYNSL 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            I +A L I  ++    Y  F NR+IFPI+    QVI F GR+ +K    KYLN+ E  +
Sbjct: 178 DIEKANLGIITNSYTKDY--FINRIIFPIKDENNQVIGFSGRSFTKDNEPKYLNTKENKV 235

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K    YN   AL   +   +          II++EG+MDV+SL +  + N ++ +GT+
Sbjct: 236 FKKSHLAYNIASALKISKSLKK----------IIVLEGFMDVISLSKIDINNTIALMGTS 285

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           L+ Y L L  + +  ++L  DGDDPG++     I +    L     V  +      DPD 
Sbjct: 286 LSNYHLNLFKRHNLDVLLFLDGDDPGIQ---ANIKISHQLLKEKINVLVIDNQTNNDPDE 342

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +        +++I + +  V+ L ++       N P++       + N I  + ++ L 
Sbjct: 343 LVN-NNVEYLKQIINQPIHPVNYLIEKLWNKVDINNPNQIENFIKKVLNFIFDLNNEILV 401

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA-----------RHRDQKGPSQRLMQSS 470
                 + +  +   Q          +  K N            +   Q     +    S
Sbjct: 402 ETTINKLVELTKISEQTIKNNLIELKKQSKPNNSFNKNSTTQVFKTNTQTNKVNKQQSKS 461

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ- 529
                + K+    E  + ++L+     L +    +  +   + +++     L + + ++ 
Sbjct: 462 KPNDFIKKEYINAERRIFISLLISDQFLDKIAANVDKM--IHPDIKHATINLINLYNKKI 519

Query: 530 -KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            +     +    L E       K+ +  + ++ L S         +R+            
Sbjct: 520 YQGNDINKAFDLLKEYNLTGFDKKQEEIINNSLLTSIK-------IRESEIDDAFSKLDS 572

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                +   ++K + +   K E  +    I  L     + 
Sbjct: 573 YHNDTEISNLKKLLVESKNKTERFQIWNGIDTLKNKKKKR 612


>gi|220916245|ref|YP_002491549.1| DNA primase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954099|gb|ACL64483.1| DNA primase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 454

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 118/468 (25%), Positives = 193/468 (41%), Gaps = 29/468 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D I+++        LIG  V   +         Y   CPFH+E+  SF        +
Sbjct: 2   ISPDIIEEVKRLADPVVLIGARVRLWKSG-----IAYAGSCPFHEERQASFRVYPKDKHF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119
            C+ C   GD   F     G +F   V+ LAA  G+ +P   P   ++++    +  L+ 
Sbjct: 57  VCYGCGASGDIFQFFQRADGKAFPTVVRELAASLGIVIPPERPATAQEQRERGERASLLA 116

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             E A   +  +L  +  ++   YL ER +   A   F+LG+A    + L   L     +
Sbjct: 117 ACEAAMSHWQRNLWGSEGEKAREYLAERRVTDEAARAFRLGFARPDWHDLERALGAAKIA 176

Query: 180 EEKIIEAGLLIDGDNSAT---SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
                 AG++   +        +DRFR+R++FPI   +G+V  FG RTL      KYLN 
Sbjct: 177 HAVQHAAGVITSREVPGKGVRYHDRFRDRVVFPIEDIQGRVTGFGARTLGAEPEAKYLNG 236

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET LF K + L+    A + ++ + R           +LVEGY DV++L QAG  + V+
Sbjct: 237 PETPLFKKSRVLFGLRQARDVIRSTGRA----------LLVEGYFDVIALHQAGFTSAVA 286

Query: 297 SLGTALTEYQLRLLW-KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           + GT L+  Q+  L       +VL FDGD+ G  AA +A  ++L   +          S 
Sbjct: 287 ACGTTLSREQVEQLAGAGCMELVLLFDGDEGGALAAARAARVLLQANLSATVARVPTSSH 346

Query: 356 G--EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR-----SFNTPDERAELEIHL 408
           G   DPD  +   G+   E+++  + PL + L     +            + +  +   +
Sbjct: 347 GGQSDPDVLVARSGRRGMEEVLAAAKPLTEFLIDDAVQRHADGIGVQAPVEHKLAVLRAV 406

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
              +    D   R  + +A+  RL         E     R  +  +  
Sbjct: 407 MPFVLATPDGLPRATFERAVARRLGIDIGPLRQELQRAARTERPGSHP 454


>gi|224534601|ref|ZP_03675177.1| DNA primase [Borrelia spielmanii A14S]
 gi|224514278|gb|EEF84596.1| DNA primase [Borrelia spielmanii A14S]
          Length = 593

 Score =  244 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 127/604 (21%), Positives = 236/604 (39%), Gaps = 54/604 (8%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +     I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   
Sbjct: 10  IKTKFDIVAVVEQYIKLVKSGS-----TYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKG 64

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLIEV----- 123
           GD + FL  +   ++  +++ L    G+      +  +  KK + +  ++ +  +     
Sbjct: 65  GDVIGFLMDMEKINYNNALKILCEKFGIYYDDLKISRESLKKNENKDIILEIYSLNSRLV 124

Query: 124 -ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               FF     N   K L Y L  R I    +++F+LGY P +     E           
Sbjct: 125 NTIKFF----LNKNKKALDYILKSRAISKEVVDLFELGYLPLNVKDGLELHGFLVSKGYS 180

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
                       +         RLIFPI+  +G V+ FGGR L  G+  KY+N  ET +F
Sbjct: 181 FEILRKSGLFSKANPKASILSQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLSETEVF 239

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            K + LY F+  L+ ++          S+  IILVEGY+DVL+   +G++  VS+LGT+ 
Sbjct: 240 KKKELLYGFYEGLDEIK----------STKSIILVEGYIDVLAFFTSGIKRAVSTLGTSF 289

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           ++  L L+ + +  ++  FD DD GL A  KA  + L        V+ V +  G DP   
Sbjct: 290 SKEHLALIQRYADEVIFSFDSDDAGLSATLKAYQICLPF---NINVSVVKMDFGRDPADV 346

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++  GK   ++++       D L    +     N   +   +     N IN  K    + 
Sbjct: 347 LKSEGKDFLQEILNNRCDAFDYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKK 406

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            +   + ++L       + ++      +  +   R+    +                   
Sbjct: 407 IFLDKLSNKLGIGVAILLKDYYRIKERFAVDNNKRNLYAHNDDSY--------------- 451

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  L++ L+ + +      + + D    +   +K++      F   + F   ++ + L 
Sbjct: 452 -ERYLIVALLKNFSYFGIIRRNIIDSDLIDVNARKVFMCFEDLFENNEDFSLMDLKRNLK 510

Query: 543 E--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-----LLSRQK 595
           +  +    L +++     +    +       +  R+   + +   KR+          Q 
Sbjct: 511 DTYKVSEILFEEILNSEFEVDDETLIHVLLAIKRRKLDSRVVLCKKRYEGDSLVSAKIQI 570

Query: 596 EEIE 599
            E+ 
Sbjct: 571 NELM 574


>gi|311110031|ref|YP_003982882.1| DNA primase 2 [Achromobacter xylosoxidans A8]
 gi|310764720|gb|ADP20167.1| DNA primase 2 [Achromobacter xylosoxidans A8]
          Length = 591

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 127/530 (23%), Positives = 212/530 (40%), Gaps = 63/530 (11%)

Query: 2   NYPRDFIKDLLIHIP--ISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
             P D ++ + +     +  ++G  VD  +         Y   CPFH E TPSF+   +K
Sbjct: 14  RIPDDVVEQVKLRADENLVEVVGAAVDLRKAGN-----SYVGLCPFHSEGTPSFNVVPAK 68

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL------------------- 100
           GF++C  C  KG  + F     G SF + ++  A   GV +                   
Sbjct: 69  GFFFCHGCGEKGRAVEFQQKYFGMSFPDVIREFAGRFGVRIPGEGGPSPVIQRALEVARR 128

Query: 101 ---PVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNAR--DKRLHYYLDERGIDSHAIE 155
              P  D       + +  L  ++E A   F    +        L  ++ +R +   +I+
Sbjct: 129 PPAPAEDLPAPVSLERRAALSAVLEEALAAFRSPARGPHLQSATLQEWVKKRHLTDKSID 188

Query: 156 MFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRG 215
           +F++G  P   + LRE    + + +  +I+A L+ + D+    +D FR+R+IFP+R + G
Sbjct: 189 LFEIGITPRGWHGLREVFGDR-YDDPLLIDADLVRETDDQKRRFDTFRDRIIFPVRDANG 247

Query: 216 QVIAFGGRTLSKGES----VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271
            ++ FGGR L+  +      KYLN+  T +FHKG  LY    A   +           S 
Sbjct: 248 SLVGFGGRRLNDDKENERTPKYLNTGTTDIFHKGHLLYGLHVAKTEIA----------SR 297

Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAA 331
            + ++VEGYMDV+ L Q G  N V+++GTA     L  L + +  +V  FDGD  G RA 
Sbjct: 298 GYALVVEGYMDVVMLAQHGFPNAVAAMGTAFRGSHLNQLCQHTSEVVYLFDGDAAGERAM 357

Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391
           ++A+                +   G+DPD +IR  G  A +K +     L     +R  E
Sbjct: 358 WRAVR--ESLPYADRVNFRFISLNGQDPDEWIRSVGTDAVQKAVDHGESLASYFLRRVRE 415

Query: 392 NRSFNTPDER------------AELEIHLKNCINHIKD-QKLRYYYSQAIRDRLQQLFQK 438
             + +  +               +  + LK  +  I     LR+Y  + +   L    + 
Sbjct: 416 MVAQDGAESSAPSDVKQRNGGPQDRALELKGMLALIPSRSSLRHYLEREVSRILAPSEES 475

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK--KPSLREAA 486
                S   +        R       R   +  ++  L     P   E A
Sbjct: 476 AQASQSAPSQLDGLPPMKRLAIAAMLRPDLAGQIRPALLALLPPEHPERA 525


>gi|289548926|ref|YP_003473914.1| DNA primase [Thermocrinis albus DSM 14484]
 gi|289182543|gb|ADC89787.1| DNA primase [Thermocrinis albus DSM 14484]
          Length = 508

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 143/583 (24%), Positives = 235/583 (40%), Gaps = 86/583 (14%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           ++  + I ++I  Y+D  R  +N     Y   CPFH + TPS + + SKG + CF C V 
Sbjct: 6   VVSKLDIVDVISSYIDLKRVGSN-----YAGRCPFHPDDTPSLYVSPSKGIWKCFGCGVG 60

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
           GD + F++   G S+ E++  LA    +PL +        ++    L+  +  A+ F+H 
Sbjct: 61  GDAVKFVALYEGVSYTEALMELARKYKIPLKLPS------QRHDDALLEALRQASQFYHE 114

Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190
            LK    ++   YL  RG+   +I+ F+LGY+P S    +     K     ++ E    I
Sbjct: 115 RLKEN--QQALEYLYGRGLSGRSIQRFELGYSPTSHQLCQFL---KEAGLLEVYERSGNI 169

Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250
                 +  D F  RLI PIR  RG V+AFGGRTL   E  KYLNSPE   F K   L+ 
Sbjct: 170 LRLADGSCRDMFAGRLIIPIRDHRGNVVAFGGRTL-TDEKPKYLNSPEKEHFQKRNILFG 228

Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310
           F+    ++++  R          +ILVEGY DV+S+ QAG +  V+ LGT+LT  Q  L+
Sbjct: 229 FYEGKEFIKERRR----------VILVEGYFDVISMHQAGFKETVAPLGTSLTSQQAHLI 278

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
              +  ++L FDGD  G +A  +A+      L     V  + L  GEDPD++++      
Sbjct: 279 ASYADEVILIFDGDSAGRQAVRRAV---PHLLSENLSVKVLYLPEGEDPDTYVKKTDLH- 334

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
                +ESLP +      + +N               L      ++D   R      +  
Sbjct: 335 ---RELESLPDILEDLLSKAKN--------DRNSLETLLYLSGFVRDPVKRGEILLTLAK 383

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
                                           S+++ +    + +  KK +  E  LL  
Sbjct: 384 LTGMPVSLL-----------------------SEKVPRVRGEREEEEKKLTFHEKILLTG 420

Query: 491 LINHPAILQEQYQELADIRYDNNELQKL-----WSFLFSDFVEQKYFLPEEIHQRLCERG 545
           ++ +               + N  L++L      + +     ++   L     +R     
Sbjct: 421 ILRY--------------NFTNVPLEELNLSPYAAQILEAIQKEDLHLVPAEIRRGRISD 466

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                  +             T  ++  +R+  + A  L KR 
Sbjct: 467 ERVFWDAVKALSIKKEDLEEETPKDLSQLRK--RPATRLRKRR 507


>gi|218288617|ref|ZP_03492894.1| DNA primase catalytic core domain protein [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241274|gb|EED08449.1| DNA primase catalytic core domain protein [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 529

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 158/564 (28%), Positives = 257/564 (45%), Gaps = 45/564 (7%)

Query: 78  SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNAR- 136
             + G SF E+V  LA   G+PLP       ++        +  E+A   F+H L N   
Sbjct: 1   MDIEGISFAETVSLLAERCGIPLPDSLHAPAQRSPRLERYRQAYELAAKAFNHILMNTDA 60

Query: 137 DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSA 196
             +  +YL  RGI    +  F+LGYAP S  ++   L+QKGFS E++I  GL +D     
Sbjct: 61  GVQALHYLLSRGISRTTMATFQLGYAPPSGRAMMSFLQQKGFSAEELIACGLAVD--LGG 118

Query: 197 TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALN 256
              DRFR R+I PI   RGQV+AFG R L      KYLNSPE  LFHKG+ L+N   A  
Sbjct: 119 ELVDRFRGRVIIPIADRRGQVVAFGARALDDDTKPKYLNSPEYELFHKGRMLFNVHRARK 178

Query: 257 YLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR 316
            +++  R           +L+EGYMDVL++ QAG++  V++LGT+LTE Q +LL     +
Sbjct: 179 AIRRERRA----------LLLEGYMDVLAVAQAGIECAVATLGTSLTEDQAQLLKADCDK 228

Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376
           +V+ +DGD+ G +A  +AID+       G     + L  G DPD +IR +G  AFE+++ 
Sbjct: 229 VVIAYDGDEAGRKATVRAIDV---LEQAGVTPVVLRLPDGMDPDEYIRAHGGRAFERMLS 285

Query: 377 ESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
           ES    V  L +       + +P  R E    +   +        + Y  + +       
Sbjct: 286 ESTWTAVQFLIEDMRARAEWVSPAGRTEFLRQVLRLLAERASPVEQEYQLRNLSQEFNLS 345

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +    E  G+ +  ++ +  R++  P     +++  K ++S +       +L   +   
Sbjct: 346 VETLKEEMRGFAKPLRRRSPPREEVAPWVNSPRAAKGKDQVSLR-------ILQAALFSQ 398

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
              +   ++       +     L S ++S  +EQ    P     RL +     L   L  
Sbjct: 399 EAAEYLMEK-GVTELAHPLHTALLSHVYSWRLEQPGQPPSAFIDRLEDEELVRLASSL-- 455

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
                 L+    E     +   Y +AL L++    L ++ +E  +   +  A G+ EK+ 
Sbjct: 456 ------LFDEPPEITAE-LVDDYLRALELFR----LEQELKEKVRAWNEAEAAGDQEKS- 503

Query: 616 ILISILHEVHIQIHQIESQEAMIE 639
                  E+ +Q+  I+SQ A ++
Sbjct: 504 ------REIKLQVEWIQSQMATMK 521


>gi|51598963|ref|YP_073151.1| DNA primase [Borrelia garinii PBi]
 gi|51573534|gb|AAU07559.1| DNA primase [Borrelia garinii PBi]
          Length = 593

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 140/619 (22%), Positives = 249/619 (40%), Gaps = 65/619 (10%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +     I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   
Sbjct: 10  IKAKFDIVAIVEQYIKLAKSGS-----TYKGLCPFHAEKTPSFFVNSLQGYFYCFGCKKG 64

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGV---PLPVVDPKIEKKEKIQ--TDLIRLIEV-- 123
           GD + FL  +   ++ ++++ L    G+    L +     +K E     + +  L     
Sbjct: 65  GDVIGFLMDMEKINYNDALKILCEKFGIYYNDLKINRKSEKKSENKDMVSKIYSLNSRLI 124

Query: 124 -ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL---REHLRQKGFS 179
               FF     N   K L Y L  R I    +++F+LGY P S        + L  KG+S
Sbjct: 125 NTIKFF----LNKNKKALDYVLKSRAISKEVVDLFELGYLPFSIKDGLELHDFLVSKGYS 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            E + ++GL    +  A+       RLIFPI+  +G V+ FGGR L  G+  KY+N  ET
Sbjct: 181 SEILRKSGLFSKTNPKASI---LSQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLSET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K + LY F+  LN ++          S+  +ILVEGY+DVL+   +G++  VS+LG
Sbjct: 237 EVFKKKELLYGFYEGLNEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ ++  L L+ + +  ++  FDGDD GL A  KA  + L        V+ V +  G DP
Sbjct: 287 TSFSKEHLALIQRYANEVIFSFDGDDAGLSATLKAYQICLPF---NINVSVVKMDFGLDP 343

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              ++  G+ + +K++       + L    +     N   +   +     N IN  K   
Sbjct: 344 ADLLKDKGEGSLQKILNNKCDAFEYLLDAYSNKYDLNKTVDLNAMINLFLNLINLSKIDT 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  +   + ++L       + ++      +  +   R+    +                
Sbjct: 404 QKKIFLDKLSNKLGVGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY------------ 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  L++ L+ + +      + + D    +   +K++      F   K F   ++ +
Sbjct: 452 ----ERYLIVALLKNFSYFGIIRRNIIDSDLSDINARKIFMCFEDLFENNKDFSLMDLKR 507

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L +                   +     +      +     L   KR R L  +    +
Sbjct: 508 NLKD-----------SYKVSEFFFEEILNSGFEIDDEALIHILIAIKR-RKLDSRVLLCK 555

Query: 600 KQIAQVTAKGEAEKTAILI 618
           K+I   +      +   L+
Sbjct: 556 KKIDGDSLVNAKIQINELM 574


>gi|224531758|ref|ZP_03672390.1| DNA primase [Borrelia valaisiana VS116]
 gi|224511223|gb|EEF81629.1| DNA primase [Borrelia valaisiana VS116]
          Length = 593

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 139/632 (21%), Positives = 253/632 (40%), Gaps = 68/632 (10%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +     I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   
Sbjct: 10  IKAKFDIVAIVEQYIKLIKSGS-----TYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKG 64

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGV---PLPVVDPKIEKKEKIQ--TDLIRLIEV-- 123
           GD + FL  +   ++ ++++ L    G+    L +     +K E     + +  L     
Sbjct: 65  GDVIGFLMDMEKINYNDALKILCEKFGIYYNDLKISLKSEKKNENKDIVSKIYSLNSRLI 124

Query: 124 -ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL---REHLRQKGFS 179
               FF     N   K L Y L  R I    +++F+LGY P +        + L  KG+S
Sbjct: 125 NTIKFF----LNKNKKALDYVLKSRSISKEVVDLFELGYLPFNVKDGLELYDFLVSKGYS 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            E + ++GL    +           RLIFPI+  +G V+ FGGR L  G+  KY+N  ET
Sbjct: 181 FEILRKSGLFSKTNPK---VSILSQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLSET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K + LY F+   + ++          S+  +ILVEGY+DVL+   +G++  VS+LG
Sbjct: 237 EVFKKKELLYGFYEGFDEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ ++  L L+ + +  ++  FDGDD GL A  KA  + L        V+ V +  G DP
Sbjct: 287 TSFSKEHLALIQRYADEVIFSFDGDDAGLSATLKAYQICLPF---NINVSIVKMDFGRDP 343

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              ++  G+ + +K++       D L    +     N   +   +     N IN  K   
Sbjct: 344 ADVLKDEGEVSLQKILNNRCDAFDYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKLDT 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  +   + ++L       + ++      +  +   R+    +                
Sbjct: 404 QKKIFLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY------------ 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  L++ L+ + +      + + D    +  ++K +      F   K F   ++ +
Sbjct: 452 ----ERYLIVALLKNFSYFCIIRRNIIDSDLIDVNVRKTFVCFEDLFENNKDFSLMDLKK 507

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L +         + +           +E  + D  +     L   KR R L  +    +
Sbjct: 508 NLKD---------IYKVSEFFFEEILNSEFEVDD--ETLIHVLLAIKR-RKLDSRVLLCK 555

Query: 600 KQIAQVTAKGEAEKTAILI---SILHEVHIQI 628
           ++  + +      +   L+        + I I
Sbjct: 556 RRCNEDSLVNAKVQINELMFLNMQRKNLKIYI 587


>gi|195953902|ref|YP_002122192.1| DNA primase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933514|gb|ACG58214.1| DNA primase [Hydrogenobaculum sp. Y04AAS1]
          Length = 535

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 132/544 (24%), Positives = 238/544 (43%), Gaps = 59/544 (10%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I+D +  I I   I  Y++  R  +N     Y   CPFHD+ TPS   ++ K  + CF C
Sbjct: 18  IEDAIKKIDIVKEISSYIELKRSGSN-----YLGKCPFHDDSTPSLSVSEQKQIWKCFGC 72

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
              GD + F+S     S++E++ +LA    +P+        K E+    +  ++ + ++F
Sbjct: 73  GKGGDVVKFVSLHENISYMEALSKLAIKYNLPI------NIKSEEKNHKIYEVMSLVSNF 126

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
           +H  L   +  +   YL +R I+   +E++++GY+P+    L     Q        +   
Sbjct: 127 YHEEL--TKSPKAMQYLQKREINPKTVEIYEIGYSPNHYKVL--EFLQNTSEHYLELYKS 182

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGK 246
                 +S +  D F  RL+ PI+++   V+ FGGR L + +S +KYLNSP++ +F K +
Sbjct: 183 TQNLHKSSNSIRDIFEGRLVIPIKNASSNVVGFGGRILYEDKSAIKYLNSPDSFIFKKSQ 242

Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306
            L+    AL Y++              +ILVEGY DV+ L Q GV+NVV+ LGTA TE  
Sbjct: 243 LLFGIDIALPYIK----------EKEEVILVEGYFDVIRLYQIGVRNVVAPLGTAFTEEH 292

Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
            + + K +    + FD D+ G  A+ +A       +  G +  +V +   +DPD F   +
Sbjct: 293 AKTISKYAKTAYIMFDNDNAGKNASLRAA---KYLIAKGIKAFYVEIKDAKDPDEFGMKF 349

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
           GK    +L+  S  ++D+                 ++        ++++K+ +  + YSQ
Sbjct: 350 GKDGVLELLKTSKNIIDLNI--------------ESKNIDTALELVSYLKEPEDIFQYSQ 395

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG----------KL 476
            +   L     K+I +     + + +N    D       +    L+K            L
Sbjct: 396 KL---LAVGLPKHIIDQYVGKKSFVENKEQGDISYEKIPMKDRILLKALKECDIVDINPL 452

Query: 477 SKKPSLREAALLLTLINH-PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                 + + ++   I +   +  E+ + L  + Y   +   L  +L     EQ     E
Sbjct: 453 DIDWLDKNSIIIAEKIKYQQELSDEELKLLESVDYLTKD--ALEKYLLKTAKEQNAVTKE 510

Query: 536 EIHQ 539
           E+  
Sbjct: 511 ELMN 514


>gi|269123265|ref|YP_003305842.1| DNA primase [Streptobacillus moniliformis DSM 12112]
 gi|268314591|gb|ACZ00965.1| DNA primase [Streptobacillus moniliformis DSM 12112]
          Length = 595

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 142/636 (22%), Positives = 269/636 (42%), Gaps = 54/636 (8%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           + ++ +I I +LIGQYVD ++         Y    PF  E TPSF  +  K  +  FS  
Sbjct: 9   EKIINNIDIVDLIGQYVDLNKAG-----VSYKGYSPFKSENTPSFSVHPVKKIFKDFSSG 63

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
             G+ +SF S +   S+ E++  L+   G+ +   + K   K+ I     ++++ A +FF
Sbjct: 64  KGGNVISFYSYIKNISYYEALHELSKKYGINIKKSNSKYLIKDNIG---HKILKDAMEFF 120

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
              L   +      YL  RG + + ++ + +GYA +    L  HL++K   EE I    +
Sbjct: 121 R--LNFEKSSEAKEYLINRGFNLNDLKRYDIGYATNDWNLLYNHLKEKYDVEELIKLGLV 178

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILFHKGKN 247
            +   ++   YD FR R+IFPI +   QV+ FGGR + +   + KYLNS E+ +F K   
Sbjct: 179 TVSSTDTNNIYDTFRKRIIFPIFNIHQQVVGFGGRYIGENVNAPKYLNSTESYVFDKSSE 238

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           LY  F           K +      + IL+EG++DVLS       N V+SLGTA TE Q 
Sbjct: 239 LYGLFN----------KGIEIKEKKYAILMEGFLDVLSSHINTFDNAVASLGTAFTEKQA 288

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG-EDPDSFIRCY 366
           +LL K +  I++ +D D+ G +A    I++          +    L  G +DPD + + Y
Sbjct: 289 KLLKKYTDNIIIMYDKDEAGQKATKSVINI---LNKLEFNIKCSSLPDGVKDPDEYFKKY 345

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
            K  F +++ +S+  +D +++ + ++  F     + E    +K+   ++ +  +      
Sbjct: 346 SKDDFFEILGKSVGALDYIFEMDLKDFDFTQTTSKREAIELMKSYFENVTNDIV------ 399

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
              D +++  +    E       + +N     +   + + +    V  K++K+  L + +
Sbjct: 400 -YSDEIEKFSRLIDVETKYILSKYIRNKNKNFKDLDTIKEVSQDRVNEKINKQEELEKLS 458

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
           ++  L+    + Q  Y  L    + + +  +L   L S                  +   
Sbjct: 459 IVFLLLG-KEVDQILYNILKSFEFQSEKYVELHKKLLS-------------IDYKIDEVS 504

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
             +L + + +                D  +  +  L L  +    S     I ++I +  
Sbjct: 505 YLVLTKDEEEFMIETTCEFKNNYTDEDYIRIIKTWLELLIKKYEASIDILPINEKIDKKI 564

Query: 607 AKGEAEKTAILISILHEV--HIQIHQIESQEAMIEG 640
             G       L++ L  V     + +   +  +++G
Sbjct: 565 HIG------KLLNKLRNVVNINNLEKCYKEIIVLKG 594


>gi|298376726|ref|ZP_06986681.1| CHC2 zinc finger protein [Bacteroides sp. 3_1_19]
 gi|298266604|gb|EFI08262.1| CHC2 zinc finger protein [Bacteroides sp. 3_1_19]
          Length = 573

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 129/654 (19%), Positives = 216/654 (33%), Gaps = 99/654 (15%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D ++ +     I  +   Y+   R        D+ A CPFHDE+ PSF  + ++   
Sbjct: 2   LTDDTLRKVRETARIDEVASGYLTLHRSGK-----DFVALCPFHDERHPSFRVSPARNIG 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CFSC    D +  +  + GC F E+V+ LA    + +           + + D    + 
Sbjct: 57  KCFSCGEAADPIRLVCHMEGCGFEEAVRLLARKYNIEVEET---AAAGRERRRDEREALL 113

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           +A   F   L           +++R         F +G  P                   
Sbjct: 114 LANASFASGLLPGHPVGTARTIEDRHGLEETYCGFGVGLCPPD----------------- 156

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241
                           +  F  RLIFPI ++ GQV  F GR+L+  E   KY+NSP++  
Sbjct: 157 ------------VPQVFRPFLGRLIFPIHTTGGQVAGFAGRSLTPSEKGRKYVNSPDSPA 204

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           +HKG  LY    A+  ++          S   I+L EGY DVL+    G++  V   GTA
Sbjct: 205 YHKGHILYGLHKAVKAVR----------SEGRILLCEGYKDVLAFHACGIRYAVGLCGTA 254

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE  +R + +L+ ++ L  D D  G +   +   ++L     G  V+ + L  G DPD 
Sbjct: 255 LTEEHIRAIRRLAGQVTLSLDPDPAGRQNTVRCAHMLLSE---GCAVSLLPLPDGMDPDE 311

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             R  G     +L  E      + +      ++ + P             I  +      
Sbjct: 312 VYRRKGSDELARLAREGT----LDYLSYRIRQAASRPHTDTAAINETLGEIGLLSSPLAV 367

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Y     +        +    E S                GP    +     +        
Sbjct: 368 YRRIGELSGATGIPIEVLRQEISV-------------ATGPKNVPVPVPKKEAAGLTPAL 414

Query: 482 LREAALLLTLI-NHPAILQE-----------QYQELADIRYD--NNELQKLWSFLFSDFV 527
            RE  LL   + +H  +  +              ELAD      + E  +L   L     
Sbjct: 415 PRERTLLRFCLTHHDRMFYDPDGNGISLPAWVSGELADNELPLEDPEHARLLHLL----A 470

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E K+         + +     L+  L             T     +   G  +   L   
Sbjct: 471 EGKHPDG------IADERLSALVLSLRASA------PQDTGPVPDERLPGETRFQVLLYG 518

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIESQEAMIEG 640
                R+     + +       E  +    +     +  +I  +++SQ  + EG
Sbjct: 519 ESFARRKLARALESVRTAATPEERLRLQATLENHFALSDRIARELQSQSILPEG 572


>gi|193216689|ref|YP_001999931.1| DNA primase [Mycoplasma arthritidis 158L3-1]
 gi|193002012|gb|ACF07227.1| DNA primase [Mycoplasma arthritidis 158L3-1]
          Length = 612

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 139/634 (21%), Positives = 259/634 (40%), Gaps = 49/634 (7%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           +++L    I ++I + V   ++  N     + ACCPFH EKTPSF  +  KG + CF C 
Sbjct: 8   EEVLARTDIVSVISETVTLSKQGKN-----FRACCPFHGEKTPSFMVSPEKGIFKCFGCG 62

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLIRLIEVAT 125
             G+ L FL      S +E+++ LA  A + +        +   K + +  LI + + A 
Sbjct: 63  KSGNALKFLEYSKNISSLEALKMLATKANINIDDYLTKHTQATAKSQEELTLIDITKEAN 122

Query: 126 DFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
           DFF + + KN     L  +L+ R +D+  I+ F++G+AP+          +  F++  I 
Sbjct: 123 DFFQYQMVKNKETPELKKFLESRHLDNKLIKEFEIGFAPE--NISIYSHLKNKFNDFAIS 180

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
            A L+         ++   NR+ FPI++  G V+AF  R ++     KYLNS ET +F K
Sbjct: 181 NASLVSSISFEKNFFN---NRITFPIKNEYGDVVAFSARDITNKLDNKYLNSAETPIFKK 237

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            + L+N++ A  ++          +S+  + LVEG  D ++L +A   N V+S+GT+L++
Sbjct: 238 SEVLFNYYHAKPFI----------SSTKEVYLVEGQFDCIALYKANFPNAVASMGTSLSK 287

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL-IPGNRVNFVLLSRGEDPDSFI 363
             L LL     +I L FD D  G  A  K + ++L         VNF+  +  +D D   
Sbjct: 288 NHLALLRG--TKINLFFDSDAAGKAATEKNLKIILMLSLDFSLEVNFLKNTFNKDADELY 345

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCINHIKDQKLR 421
                   + ++     L + L+    E          +R E+   L   + ++      
Sbjct: 346 NLDDGQTLKTILKRPQDLGEYLYDTFIEPYKNTALNAQKRYEIYSKLFEYLYYLPKPMQL 405

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
            + S+ I + +         E S     +  +      K  S +   SS +    +    
Sbjct: 406 LFKSRLINENILDKETYESFESSFLKPNFPSDPNLARIKITSSKTKNSSEIPKSFTNYY- 464

Query: 482 LREAALLLTLINHPAILQEQYQELADIRY-DNNELQKLWSFLF---SDFVEQKYFLPEEI 537
             E +L    +N P  ++ + ++   I +  + +   +   +                 +
Sbjct: 465 --ENSLSFNDLNFPKQIKPKAKK--SINFGRSGDFAIILKAILMHPDYIKRWPKETYATL 520

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           H    ++    L+  +  +           E    D      + L+L  +   L+     
Sbjct: 521 HAEELQQTKKSLICYIISKNDKMKDKFLLPELIKND------ENLSLETKDEYLN----- 569

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           I  +I  + +    E+    I  L++   ++ QI
Sbjct: 570 ILLEIQNLNSSTSEEEFDSKIKALNQSEPKLKQI 603


>gi|301310030|ref|ZP_07215969.1| putative CHC2 zinc finger protein [Bacteroides sp. 20_3]
 gi|300831604|gb|EFK62235.1| putative CHC2 zinc finger protein [Bacteroides sp. 20_3]
          Length = 573

 Score =  237 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 129/654 (19%), Positives = 216/654 (33%), Gaps = 99/654 (15%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D ++ +     I  +   Y+   R        D+ A CPFHDE+ PSF  + ++   
Sbjct: 2   LTDDTLRKVRETARIDEVASGYLTLHRSGK-----DFVALCPFHDERHPSFRVSPARNIG 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CFSC    D +  +  + GC F E+V+ LA    + +           + + D    + 
Sbjct: 57  KCFSCGEAADPIRLVCHMEGCGFEEAVRLLARKYNIEVEET---AAAGRERRRDEREALL 113

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           +A   F   L           +++R         F +G  P                   
Sbjct: 114 LANASFASGLLPGHPVGTARTIEDRHGLEETYRGFGVGLCPPD----------------- 156

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241
                           +  F  RLIFPI ++ GQV  F GR+L+  E   KY+NSP++  
Sbjct: 157 ------------VPQVFRPFLGRLIFPIHTTGGQVAGFAGRSLTPSEKGRKYVNSPDSPA 204

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           +HKG  LY    A+  ++          S   I+L EGY DVL+    G++  V   GTA
Sbjct: 205 YHKGHILYGLHKAVKAVR----------SEGRILLCEGYKDVLAFHACGIRYAVGLCGTA 254

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE  +R + +L+ ++ L  D D  G +   +   ++L     G  V+ + L  G DPD 
Sbjct: 255 LTEEHIRAIRRLAGQVTLSLDPDPAGRQNTVRCAHMLLSE---GCAVSLLPLPDGMDPDE 311

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             R  G     +L  E      + +      ++ + P             I  +      
Sbjct: 312 VYRRKGSDELARLAREGT----LDYLSYRIRQAASRPHTDTAAINETLGEIGLLSSPLAV 367

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Y     +        +    E S                GP    +     +        
Sbjct: 368 YRRIGELSGATGIPIEVLRQEISV-------------ATGPKNVPVPVPKKEAAGLTPAL 414

Query: 482 LREAALLLTLI-NHPAILQE-----------QYQELADIRYD--NNELQKLWSFLFSDFV 527
            RE  LL   + +H  +  +              ELAD      + E  +L   L     
Sbjct: 415 PRERTLLRFCLTHHDRMFYDPDGNGISLPAWVSGELADNELPLEDPEHARLLHLL----A 470

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E K+         + +     L+  L             T     +   G  +   L   
Sbjct: 471 EGKHPDG------IADERLSALVLSLRASA------PQDTGPVPDERLPGETRFQVLLYG 518

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIESQEAMIEG 640
                R+     + +       E  +    +     +  +I  +++SQ  + EG
Sbjct: 519 ESFARRKLARALESVRTAATPEERLRLQATLENHFALSDRIARELQSQSILPEG 572


>gi|301165750|emb|CBW25322.1| putative DNA primase [Bacteriovorax marinus SJ]
          Length = 641

 Score =  236 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 137/663 (20%), Positives = 259/663 (39%), Gaps = 61/663 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+  +D  + ++  IPIS ++G Y+   ++   A+       CPFHD+  PS +  DS+G
Sbjct: 1   MSL-KDLKERIVNEIPISAIVGNYITVTKKGNTALS-----ICPFHDDHKPSMNVTDSRG 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL--I 118
            Y CF+C   G+ + F+       FIE+++ + +  G+     D   ++K K    L   
Sbjct: 55  RYKCFACEAGGNAIDFVINYKNLDFIEALKEICSNHGIN---FDDYNKQKAKPPKVLMAE 111

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           +++  ++  +    ++   +    ++  RG+     + + LGYAP               
Sbjct: 112 KILTKSSQLYQRIAESGHYEEYTKFIKNRGLSKDIAKTYNLGYAPKDSKLTTYLSSIPDE 171

Query: 179 SEEKIIEAG------LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
            E     +       + +D ++S + YD FR+R+IFPI    GQV+ +  R +   +  K
Sbjct: 172 KERDFALSVAKELGLIRVDKNDSKSHYDTFRDRIIFPIWDQYGQVVGYTSRAVFDYQKAK 231

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           Y+NS E+ +F K   LY    A + ++          S   +ILVEG MD ++L   G  
Sbjct: 232 YMNSLESFIFKKKHILYGLHLAKSSIR----------SKDAVILVEGNMDQIALFNKGFT 281

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           N V   G A+ +  L  L  L+  I L  D D+PG  AA +   +    L  G    F+ 
Sbjct: 282 NSVGIQGIAMGDSSLVKLKALTKNIYLALDNDNPGWNAATR---INTQCLESGITAKFID 338

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L+  +DPD F++  G    +K I  +   +D+  +R    +     D + ++   +   +
Sbjct: 339 LAPHKDPDDFLQAEGSIELQKRIDNAKAFIDVQIERAIPTKVPELLDAQLQILNKVFAIL 398

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           + +KD       +      +  L  +     S Y  +   +        P+       L+
Sbjct: 399 SPLKDALAATERAAQAAKTIG-LKSEASQIISNYKDFLSGDQPPVQHFAPTPSEETEGLI 457

Query: 473 KGK--------------------LSKKPSLREAALLLTLINHPA-ILQEQYQELADIRY- 510
                                   S   S  E   L  +I HP  +  ++  EL  + + 
Sbjct: 458 TESFHEEIPYEELQYLSGEMELVDSPSLSKIETTFLSEIIKHPECLTSDKIGEL--LDFV 515

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            +NE+Q  ++ L   F E       E    +             ++V  + L +    ++
Sbjct: 516 TSNEVQNYFTRLRELFYE---IDESEFVAIVSNFTNNGTFSSELKEVIASALKNYRAISH 572

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
                      +        L  + +E+   + Q +   + E    L+S L     +  +
Sbjct: 573 DDKAISKIIFDVRKKLELTKLDIECDEL--SLKQKSCTTDEEN-NKLMSELLAKKQERAK 629

Query: 631 IES 633
           +++
Sbjct: 630 VKA 632


>gi|313665391|ref|YP_004047262.1| DNA primase [Mycoplasma leachii PG50]
 gi|312949952|gb|ADR24548.1| DNA primase [Mycoplasma leachii PG50]
          Length = 604

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 128/632 (20%), Positives = 260/632 (41%), Gaps = 37/632 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I +++  + I ++I  Y+   ++  N     Y A CPFH++  PS   +  K  Y
Sbjct: 4   ITNEKINEIISRVSIVDIISSYLHLIKKGNN-----YLAICPFHNDSNPSLTISPQKRIY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRLI 121
            CFSC   G+ ++F+       F+ +++ +   + + L    D     K+     + +L 
Sbjct: 59  TCFSCKATGNVINFIKDYEHVDFLTALKTVCQKSNIQLDELKDFHQPIKDLESEMIFKLN 118

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             A D F  +L +        YL  R I    I+ F++G+A D    ++  L  K ++  
Sbjct: 119 SEANDIFKTTLFSNLGTNALEYLKLRNISIEEIKKFEIGFASDKTNLVQ-KLLDKNYNSL 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            I +A L I  ++    Y  F NR+IFPI+     +I F GR+ +K    KYLN+ E  +
Sbjct: 178 DIEKANLGIITNSYNKDY--FTNRIIFPIKDENSHIIGFSGRSYTKDNEPKYLNTKENKV 235

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K    YN   AL   +              II++EG+MDV+SL +  + NV++ +GT+
Sbjct: 236 FKKSHLAYNIANALKISKAL----------KQIIVLEGFMDVISLSRIDINNVIALMGTS 285

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           L+ Y L L  K +  ++L  DGDDPG++     I +    L     V  +      DPD 
Sbjct: 286 LSNYHLELFKKHNLEVLLFLDGDDPGVQ---ANIKISHQLLKQQINVKIIDNQTSYDPDE 342

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            I        +++I + +  ++ L +++      N PD+      ++ N I  + +  L 
Sbjct: 343 LIN-NDIEYLKQIINKPIHPINYLIEKKWIKTDINDPDQIENFIKNVLNFIVDLNNNILV 401

Query: 422 YYYSQAIRDRLQQLFQKYIT---EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
               + + +  +   Q       +        + N     +   + + +   L    + K
Sbjct: 402 ENTIKKLCELTKISEQTIKKTLDDLKIKSNKQQTNKNTIQKLYTTNKPISKKLPVDFIKK 461

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ--KYFLPEE 536
           +    E  + ++L+     L +    +  + + + +   +   L + + ++  +     +
Sbjct: 462 EYINAEQRIFVSLLISDQFLDKIAANVEKMIHPDIKYATI--NLINLYNKKIYQGNDINK 519

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             + L E       K+ +  + ++ +     + +  ++   + +    +K   +L+    
Sbjct: 520 AFELLKEYNLMGFDKKQEEIINNSLITQIAIKES--EIDDAFNKLDLYHKHAEVLN---- 573

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            ++K +A+   K E  +    I  L     + 
Sbjct: 574 -LKKMLAESKNKTERIQIWNGIDTLKNKKKKR 604


>gi|256840172|ref|ZP_05545681.1| DNA primase [Parabacteroides sp. D13]
 gi|256739102|gb|EEU52427.1| DNA primase [Parabacteroides sp. D13]
          Length = 573

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 126/654 (19%), Positives = 216/654 (33%), Gaps = 99/654 (15%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D ++ +     I  +   Y+   R        D+ A CPFHDE+ PSF  + ++   
Sbjct: 2   LTDDTLRKVRETARIDEVASGYLTLHRSGK-----DFVALCPFHDERHPSFRVSPARNIG 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CFSC    D +  +  + GC F E+V+ LA    + +           + + D    + 
Sbjct: 57  KCFSCGEAADPIRLVCHMEGCGFEEAVRLLARKYNIEVEET---AAAGRERRRDEREALL 113

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           +A   F   L           +++R         F +G  P +                 
Sbjct: 114 LANASFASGLLPGHPVGTARTVEDRHGLEETYRGFGVGLCPPN----------------- 156

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241
                           +  F  RLIFPI ++ GQV  F GR+L+  E   KY+NSP++  
Sbjct: 157 ------------VPQVFRPFLGRLIFPIHTTGGQVAGFAGRSLTPSEKGRKYVNSPDSPA 204

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           +HKG  LY    A+  ++          S   I+L EGY DVL+    G++  V   GTA
Sbjct: 205 YHKGHILYGLHKAVKAVR----------SEGRILLCEGYKDVLAFHACGIRYAVGLCGTA 254

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE  +R + +L+ ++ L  D D  G +   +   ++L     G  V+ + L  G DPD 
Sbjct: 255 LTEEHIRAIRRLAGQVTLSLDPDPAGRQNTVRCAHMLLSE---GCAVSLLPLPDGMDPDE 311

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             R  G     +L  E      + +      ++ + P             I  +      
Sbjct: 312 VYRRKGSDELARLAREGT----LDYLSYRIRQAASRPHTDTAAINETLGEIGLLSSPLAV 367

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Y     +        +    E S                GP    +     +        
Sbjct: 368 YRRIGELSGATGIPIEVLRQEISV-------------ATGPKNVPVPVPKKEAAGLTPTL 414

Query: 482 LREAALLLTLINHPA--ILQEQYQELA------------DIRYDNNELQKLWSFLFSDFV 527
            RE  LL   + H           E++            ++  ++ E  +L   L     
Sbjct: 415 PRERTLLRFCLTHHDRMFYDPDGNEISLPAWVSGELADNELPLEDPEHARLLHLL----S 470

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E K+         + +     L+  L             T     +   G  +   L   
Sbjct: 471 EGKHPDG------IADERLSALVLSLRASA------PQDTGPVPDERLPGETRFQVLLYG 518

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIESQEAMIEG 640
                R+     + +       E  +    +     +  +I  +++SQ  + EG
Sbjct: 519 ESFARRKLARTLESVRTAATPEERLRLQATLENHFALSDRIARELQSQSILPEG 572


>gi|302345478|ref|YP_003813831.1| DNA primase [Prevotella melaninogenica ATCC 25845]
 gi|302149959|gb|ADK96221.1| DNA primase [Prevotella melaninogenica ATCC 25845]
          Length = 1043

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 99/464 (21%), Positives = 185/464 (39%), Gaps = 47/464 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+  I+ +L    I +++G+++   +R T      Y A CPFH EKTPSF    ++  +
Sbjct: 9   IPKTIIEKILDAAHIEDVVGEFLPLQKRGTI-----YRALCPFHQEKTPSFTVTPNRSMF 63

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
           YCF CH  G+ ++FL      ++ E+V+ L    G+ +   +  I++K++   +  L+ +
Sbjct: 64  YCFGCHKGGNVITFLMEHENMTYPEAVRWLGRKYGIEVEEREETIDEKQQRLKRESLLIV 123

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
                  +       +  + + Y   R       +  ++G+AP    +L     QK F  
Sbjct: 124 NTAVHKHYREVFLRYKPAQDYAY---RRWGQKYCDEIEIGFAPIDGKALAHLPLQKEF-- 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
                  L   G  +   YD F+NR++ PI+     +I F  R +      KYLNS E++
Sbjct: 179 -------LQELGLINPQGYDFFQNRIVIPIKDRYQHIIGFTARVM-DDSQPKYLNSKESL 230

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           L+ K   ++    A     K          +  + LVEG  D + L   GVQN V+ LG+
Sbjct: 231 LYSKRSTVFGLDVAWRAAGK----------TGQMYLVEGAPDCMRLHAIGVQNAVADLGS 280

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDD----------PGLRAAYKAIDLVLCHLIPGNRVNF 350
           A T  Q +L+ + + ++    D D                    +       +    +  
Sbjct: 281 AWTVEQFQLIKRAANKVCFIPDNDPLKGGADYGTGIEAVMKAGKLATEQHLTVSVKEITT 340

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
               + EDPD++ +       + L         +LW       +    +++++    + +
Sbjct: 341 TEEGKKEDPDTYFKN------QTLFKAVEEEDFILWLAAKLFETSGNTEQKSDAVKRIAH 394

Query: 411 CINHIKDQKLRYYYSQAIRD-RLQQLFQKYITEHSGYGRYWKKN 453
            ++ I D      +  A+      +LF +   E+    R   K 
Sbjct: 395 LLSFIDDDTKLTMFIDALTKYHRGKLFWQKAIENERTRRDSPKE 438


>gi|308189915|ref|YP_003922846.1| DNA primase [Mycoplasma fermentans JER]
 gi|319777142|ref|YP_004136793.1| putative DNA primase [Mycoplasma fermentans M64]
 gi|307624657|gb|ADN68962.1| DNA primase [Mycoplasma fermentans JER]
 gi|318038217|gb|ADV34416.1| Putative DNA primase [Mycoplasma fermentans M64]
          Length = 635

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 128/667 (19%), Positives = 254/667 (38%), Gaps = 78/667 (11%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
             + +  ++    I ++I  +V   ++        +   CPFH +  PS + +  K  + 
Sbjct: 5   NHEIVDSIIASNDIVDVINSFVTLSKKGR-----SFVCICPFHQDTNPSMNVDPKKQIFK 59

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEKIQTDLIRLI 121
           CF C V G+ L+FL      +F ES++ LA  + +   L      I +  +    +I + 
Sbjct: 60  CFVCQVGGNVLTFLMKYKKWTFQESLEYLANRSNINVDLSSFQKSISRYNEEDLKIIEIN 119

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             A   F   L   ++K L  ++ +R + S  I+ F +GY+ +  ++       +   + 
Sbjct: 120 NKANSLFKLELIKRKNKELKDFIHKRALTSEIIQAFDIGYSEEESFNSIFANELENIPDL 179

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +  + +             F+NR+ F I+  +G+++ F  R L      KY+NS ET L
Sbjct: 180 LVKASLINS-----HNKSVAFKNRITFAIKDEQGEIVGFSARALDNDTKPKYINSNETKL 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K   LYN++ A             ++  + II+ EG+ DV++L +A + N V  +GTA
Sbjct: 235 FKKNSLLYNYWQA-----------NSKSEDNSIIITEGFFDVIALFKAEIYNAVGLMGTA 283

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT    RLL     ++V+  DGDD G +A+ K+   +L H         V  +   DPD 
Sbjct: 284 LTNNHFRLLKN--KKVVIFLDGDDAGQKASLKSAKFLLDHR---IDTYIVRNTTKYDPDE 338

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRS--FNTPDERAELEIHLKNCINHIKDQ- 418
               YG     KLI E+   +D +++  ++  +   +  +E   ++    + +N ++ Q 
Sbjct: 339 LFNSYGADILHKLIKEAPAALDFIYENLSKKYNLSVSPNNEIKNVKAFCNDFVNFLEHQE 398

Query: 419 -KLRYYYSQAI-------------------RDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
             ++ +Y   I                    D  +    +   E SG  +  + N     
Sbjct: 399 INVQEFYKNKIQTDYGFSIQVKHNFKLPDPYDSQEIYAPQQFPEDSGEYQLLENNIPPYA 458

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLRE--------AALLLTLINHPAILQEQYQELA---D 507
               +   +            P   E          L   L+NH  +++   +      D
Sbjct: 459 YDEQNYNQVVEYSNNVNNFNHPLNNEVPLSDYWINNLFYLLLNHTELIKLFKEREDTHKD 518

Query: 508 IRYDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           + +      + L   L+  F E K     ++ + + +     +   L++  +        
Sbjct: 519 LMFFGKLNNEDLKKELYQTFRESKSIKVAKLKEYIKDLEQENVDIDLNQFSKKYKEDKII 578

Query: 567 TEANIVDVRQGYQQALALYKRF---RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
            +      R+  +++   Y ++     + +Q   I+K                    L E
Sbjct: 579 KQNFKDVYRRALKESDNAYNKYTSNPEVLKQISSIKK------------MYDEHKEKLRE 626

Query: 624 VHIQIHQ 630
           +  +  +
Sbjct: 627 MQKRKEE 633


>gi|238810061|dbj|BAH69851.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 635

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 128/667 (19%), Positives = 254/667 (38%), Gaps = 78/667 (11%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
             + +  ++    I ++I  +V   ++        +   CPFH +  PS + +  K  + 
Sbjct: 5   NHEIVDSIIASNDIVDVINSFVTLSKKGR-----SFVCICPFHQDTNPSMNVDPKKQIFK 59

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEKIQTDLIRLI 121
           CF C V G+ L+FL      +F ES++ LA  + +   L      I +  +    +I + 
Sbjct: 60  CFVCQVGGNVLTFLMKYKKWTFQESLEYLANRSNINVDLSSFQKSISRYNEEDLKIIEIN 119

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             A   F   L   ++K L  ++ +R + S  I+ F +GY+ +  ++       +   + 
Sbjct: 120 NKANSLFKLELIKRKNKELKDFIHKRALTSEIIQAFDIGYSEEESFNSIFANELENIPDL 179

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            +  + +             F+NR+ F I+  +G+++ F  R L      KY+NS ET L
Sbjct: 180 LVKASLINS-----HNKSVAFKNRITFAIKDEQGEIVGFSARALDNDTKPKYINSNETKL 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K   LYN++ A             ++  + II+ EG+ DV++L +A + N V  +GTA
Sbjct: 235 FKKNSLLYNYWQA-----------NSKSEDNSIIITEGFFDVIALFKAEIYNAVGLMGTA 283

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT    RLL     ++V+  DGDD G +A+ K+   +L H         V  +   DPD 
Sbjct: 284 LTNNHFRLLKN--KKVVIFLDGDDAGQKASLKSAKFLLDHR---IDTYIVRNTTKYDPDE 338

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRS--FNTPDERAELEIHLKNCINHIKDQ- 418
               YG     KLI E+   +D +++  ++  +   +  +E   ++    + +N ++ Q 
Sbjct: 339 LFNSYGADILHKLIKEAPAALDFIYENLSKKYNLSVSPNNEIKNVKAFCNDFVNFLEHQE 398

Query: 419 -KLRYYYSQAI-------------------RDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
             ++ +Y   I                    D  +    +   E SG  +  + N     
Sbjct: 399 INVQEFYKNKIQTDYGFSIQVKHNFKLPDPYDSQEIYAPQQFPEDSGEYQLLENNIPPYA 458

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLRE--------AALLLTLINHPAILQEQYQELA---D 507
               +   +            P   E          L   L+NH  +++   +      D
Sbjct: 459 YDEQNYNQVVEYSNNVNNFNHPLNNEVPLSDYWINNLFYLLLNHTELIKLFKEREDTHKD 518

Query: 508 IRYDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           + +      + L   L+  F E K     ++ + + +     +   L++  +        
Sbjct: 519 LMFFGKLNNEDLKKELYQTFRESKSIKVAKLKEYIKDLEQENVDIDLNQFSKKYKEDKII 578

Query: 567 TEANIVDVRQGYQQALALYKRF---RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
            +      R+  +++   Y ++     + +Q   I+K                    L E
Sbjct: 579 KQNFKDVYRRALKESDNAYNKYTSNPEVLKQISSIKK------------MYDEHKEKLRE 626

Query: 624 VHIQIHQ 630
           +  +  +
Sbjct: 627 MQKRKEK 633


>gi|260591161|ref|ZP_05856619.1| putative CHC2 zinc finger [Prevotella veroralis F0319]
 gi|260537026|gb|EEX19643.1| putative CHC2 zinc finger [Prevotella veroralis F0319]
          Length = 1037

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 100/464 (21%), Positives = 185/464 (39%), Gaps = 47/464 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+  I+ +L    I +++G+++   +R T      Y A CPFH EKTPSF    ++  +
Sbjct: 2   IPKTIIEKILDAAHIEDVVGEFLPLQKRGTV-----YRALCPFHQEKTPSFTVTPNRSMF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
           YCF CH  GD ++FL      ++ E+V+ L    G+ +   +  I++K++   +  L+ +
Sbjct: 57  YCFGCHKGGDVITFLMEHENMTYPEAVKWLGRKYGIEVEEREETIDEKQQRLKRESLLIV 116

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
                  +       +  + + Y           +  ++G+AP    +L     QK F  
Sbjct: 117 NATVHQHYREVFLRYKPPQDYAY---HRWGQKYCDEIEIGFAPIDGKALARLPLQKEF-- 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
                  L   G  +   YD F+NR++ PI+     +I F  R +      KYLNS E++
Sbjct: 172 -------LQELGLTNPQGYDFFQNRIVIPIKDRYQHIIGFTARVM-DDGQPKYLNSKESL 223

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           L+ K   ++    A     K          +  + LVEG  D + L   G+QN V+ LG+
Sbjct: 224 LYSKRSTVFGLDVAWRAAGK----------TGQMYLVEGAPDCMRLHAIGIQNAVADLGS 273

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDP----------GLRAAYKAIDLVLCHLIPGNRVNF 350
           A T  Q +L+ + + ++    D D P                  +      ++    V  
Sbjct: 274 AWTAEQFQLIKRAASKVCFIPDNDPPKGGADYGTGIEAVMKAGKLATEQHLIVSVKEVPT 333

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
               + EDPD++ R       +           +LW       +    +++++    + +
Sbjct: 334 TEEGKKEDPDTYFRN------QTFFKAVEEEDFILWLAAKLFETSGNTEQKSDAVKQIAH 387

Query: 411 CINHIKDQKLRYYYSQAIRD-RLQQLFQKYITEHSGYGRYWKKN 453
            ++ I D      +  A+      +LF +   E+    R   K 
Sbjct: 388 LLSFIDDDTKLTMFIDALTKYHRGKLFWQKAIENERTRRDSPKE 431


>gi|330881701|gb|EGH15850.1| DNA primase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 577

 Score =  233 bits (593), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 148/593 (24%), Positives = 254/593 (42%), Gaps = 71/593 (11%)

Query: 78  SALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135
                  F ++V+ LA  AG+ +P        + ++   + L  L+  A +F+  +LK+ 
Sbjct: 1   MDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPLLTAAAEFYRQALKSH 60

Query: 136 RD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDN 194
              K    YL  RG+       F LG+AP    +L +HL      ++ +I+AGLLI+   
Sbjct: 61  PSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWENLYKHLSSDSLQQKVMIDAGLLIENAE 120

Query: 195 SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGA 254
           +   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET +FHKG+ LY  F A
Sbjct: 121 TGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPETPVFHKGQELYGLFEA 179

Query: 255 LNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLS 314
             + +          +   II+VEGYMDV++L Q G++N V++LGTA +E  L+ L+++ 
Sbjct: 180 RKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLFRVV 229

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK- 373
           P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDPD+ +R  G  AF+  
Sbjct: 230 PNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDPDTLVRSEGTDAFKAR 289

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
           +   + PL D  +++ T+     + + +A +       I+ +    LR    Q + +   
Sbjct: 290 INQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGANLRILMRQRLTEITG 349

Query: 434 QLFQKYIT------------------------------------EHSGYGRYWKKNARHR 457
              +                                        +     +      + +
Sbjct: 350 LTGEAVSQLVQSAPVDAPPSYDPYVDYDAMPDFADYQPQGGYEPQQEWTPKKTGGQNQKK 409

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQEQYQELADIRYDNNE 514
                  +  +    + +  + P+  E    A L TL++HP + ++  +  +    ++  
Sbjct: 410 WDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAEKV-ENASHFAAEDQS 468

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             +L   L     +       ++  R      G LL+ L  +      W    +      
Sbjct: 469 NAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-----WLIEADNLEQQF 523

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                 +L+  +R R L     +  +           E +A     L E+  +
Sbjct: 524 FDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKIQLRELLNR 565


>gi|42561000|ref|NP_975451.1| DNA primase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492497|emb|CAE77093.1| DNA primase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301321444|gb|ADK70087.1| DNA primase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 612

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 125/640 (19%), Positives = 245/640 (38%), Gaps = 45/640 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I +++    I ++I  Y+   ++  N     + A CPFH++  PS   +  K  Y
Sbjct: 4   ISNEKISEIISKANIVDIISSYLHLIKKGRN-----HLAVCPFHNDSNPSLTISPEKRIY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRLI 121
            CFSC   G+ ++F+       F+ +++ +     + L  +    +  K+     + +L 
Sbjct: 59  TCFSCKATGNVINFVKDFEHVDFVTALKIVCDKTNISLDELKNYNQPIKDLESETIFKLN 118

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             A + F  +L +        YL  R I    I+ F++G+A D    ++  L  K ++  
Sbjct: 119 SEANNIFKTTLFSNLGIDALEYLKSRNISIEQIKKFEIGFASDKTNLVQ-KLLDKNYNSL 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            I +A L I  ++    Y  F NR+IFPI+    QVI F GR+ +K    KYLN+ E  +
Sbjct: 178 DIEKANLGIITNSYTKDY--FTNRIIFPIKDENDQVIGFSGRSFTKDNDPKYLNTKENKV 235

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K    YN    L   +   +          II++EG+MDV+SL +  + N ++ +GT+
Sbjct: 236 FKKSHLAYNIASTLKISKSLKK----------IIVLEGFMDVISLSKIDINNTIALMGTS 285

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           L+ Y L L  + +  ++L  DGDDPG++     I +    L     V  +      DPD 
Sbjct: 286 LSNYHLNLFKRHNLDVLLFLDGDDPGIQ---ANIKISHQLLKEKINVLVIDNQTNNDPDE 342

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +        +++I + +  V+ L  +       N P++       + N I  + ++ L 
Sbjct: 343 LVN-NNVEYLKQIINQPIHPVNYLIDKLWNKVDNNDPNQIENFIKKVLNFIFDLNNEILV 401

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS---- 477
                 + +  +   Q          +  K N               +   K        
Sbjct: 402 EATINKLVELTKISEQTIKNNLIELKKQLKLNNSFNKNSTTQVFKTNTQTNKVNKQQFKT 461

Query: 478 -------KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ- 529
                  K+    E  + ++L+     L +    +  +   + +++     L + + ++ 
Sbjct: 462 KPNDFIKKEYINAEKRIFISLLISDQFLDKIAANVEKM--IHPDIKHATINLINLYNKKI 519

Query: 530 -KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            +     +    L E       K+ +  + ++ L S         +R+            
Sbjct: 520 YQGNDINKAFDLLKEYNLTGFDKKQEEIINNSLLTSIK-------IRESEIDDAFSKLDS 572

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                +   ++K +A+   K E  +    I  L     + 
Sbjct: 573 YHNDTEISNLKKLLAESKNKTERFQIWNGIDTLKNKKKKR 612


>gi|219685541|ref|ZP_03540358.1| DNA primase [Borrelia garinii Far04]
 gi|219672940|gb|EED29962.1| DNA primase [Borrelia garinii Far04]
          Length = 593

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 140/619 (22%), Positives = 250/619 (40%), Gaps = 65/619 (10%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +     I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   
Sbjct: 10  IKAKFDIVAIVEQYIKLVKSGS-----TYKGLCPFHAEKTPSFFVNSLQGYFYCFGCKKS 64

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGV---PLPVVDPKIEKKEKIQ--TDLIRLIEV-- 123
           GD + FL  +   ++ ++++ L    G+    L +     +K E     + +  L     
Sbjct: 65  GDVIGFLMDMEKINYNDALKILCEKFGIYYNDLKINRKSEKKSENKDMVSKIYSLNSRLV 124

Query: 124 -ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL---REHLRQKGFS 179
               FF     N   K L Y L  R I    +++F+LGY P +        + L  KG+S
Sbjct: 125 NTIKFF----LNKNQKALDYVLKSRAISKEVVDLFELGYLPFNIKDGLELHDFLVSKGYS 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            E + ++GL    +  A+       RLIFPI+  +G V+ FGGR L  G+  KY+N  ET
Sbjct: 181 SEILRKSGLFSKTNPKASI---LSQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLSET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K + LY F+  LN ++          S+  +ILVEGY+DVL+   +G++  VS+LG
Sbjct: 237 EVFKKKELLYGFYEGLNEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ ++  L L+ + +  I+  FDGDD GL A  KA  + L        V+ V +  G DP
Sbjct: 287 TSFSKEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVKMDFGLDP 343

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              ++  G+ + +K++       + L    +     N   +   +     N IN  K   
Sbjct: 344 ADLLKDKGERSLQKILDNKCDAFEYLLDAYSNKYDLNKTVDLNAMINLFLNLINLSKIDT 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  +   + ++L       + ++      +  +   R+    +                
Sbjct: 404 QKKIFLDKLSNKLGVGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY------------ 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  L++ L+ + +      + + D    + + +K++      F   K F   ++ +
Sbjct: 452 ----ERYLIVALLKNFSYFGIIRRNIIDSDLIDIDARKIFMCFEDLFENNKDFSLMDLKR 507

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L +                   +     +      +     L   KR R L  +    +
Sbjct: 508 NLKD-----------SYKVSEFFFEEILNSGFEVDDEALIHILIAIKR-RKLDSRVLLCK 555

Query: 600 KQIAQVTAKGEAEKTAILI 618
           K+I   +      +   L+
Sbjct: 556 KKIDGDSLVNAKIQINELM 574


>gi|260174582|ref|ZP_05760994.1| DNA primase [Bacteroides sp. D2]
 gi|315922844|ref|ZP_07919084.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696719|gb|EFS33554.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1090

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 106/503 (21%), Positives = 190/503 (37%), Gaps = 55/503 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I  +   + I  ++  YV   ++            CPFH E T SF  N  K  Y
Sbjct: 2   ISETTINKVRD-LDIKEVLEPYVTLTKKG-----VALIGLCPFHSENTASFKVNPQKNLY 55

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE----KIQTDLI 118
           +CF C   GD ++F+      SF+E+V  +A    + +  VD K  + +    K +  L+
Sbjct: 56  HCFGCGRGGDAITFIMEKENLSFMEAVLFIAKKHNIEIEYVDEKQTEDQKAEAKHRESLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLH--YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            +++    FF  +++   +                       +GYAP    +  +  RQK
Sbjct: 116 IVLDHVQRFFQENMRINTNDECRAARDYTYGRWPEEFCATSAIGYAPKDSQAFLDFCRQK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235
             +EE + E GLL        +Y  FR R++ PIR+  G++IA+  R + K  ++ KY+N
Sbjct: 176 ALNEELLFELGLLKRS-EDGRAYAMFRERIMIPIRNRWGRIIAYTARYIGKNSQAPKYIN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  +I++ KG+ L+    A            R+  +++ I+VEG  DVL +   G  N V
Sbjct: 235 SATSIVYSKGETLFGIDRA-----------SRQRGANYFIIVEGAPDVLKMQSIGFDNTV 283

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVL---------------- 339
           +SLGTA TE Q   L K +  +    D D    +      + V+                
Sbjct: 284 ASLGTAWTEEQFEQLKKFTSSVCFVPDSDVALDKFYGPGFEAVMANGASAIKKGFHVTVR 343

Query: 340 -------CHLIPGNRVNFVLLSRGED-PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391
                         +  +      ED P          +F     +   L +  +     
Sbjct: 344 ELPFAQAPMTDEELQNLYADSEVPEDAPRMKPVKNDADSFIHCREDYTSLTEKHFIVWLA 403

Query: 392 NRSFN---TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD---RLQQLFQKYITEHSG 445
            + F    +  E  +    + + + ++KDQ +     + +     +++            
Sbjct: 404 QKRFFVAGSLMEERKCVAEIADLLRYVKDQLVFDQCIEQLAKLHGKVKLWRDAVSQARGE 463

Query: 446 YGRYWKKNARHRDQKGPSQRLMQ 468
             +  +K     DQ+  ++ L Q
Sbjct: 464 ARKRNEKQTGMNDQQREAELLRQ 486


>gi|83319946|ref|YP_424477.1| DNA primase [Mycoplasma capricolum subsp. capricolum ATCC 27343]
 gi|83283832|gb|ABC01764.1| DNA primase [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 604

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 125/632 (19%), Positives = 256/632 (40%), Gaps = 37/632 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I +++    I ++I  Y+   ++  N     Y A CPFH++  PS   +  K  Y
Sbjct: 4   ITNEKINEIISQANIVDIISSYLHLIKKGNN-----YLAICPFHNDSNPSLTISPQKRIY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRLI 121
            CFSC   G+ ++F+       F+ +++ +   + + L    D     K+     +++L 
Sbjct: 59  TCFSCKATGNVINFIKDYEHVDFLTALKTVCEKSNIQLDELKDFHQPIKDLESEMILKLN 118

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             A D F  +L +        YL  R I    I+ F++G+A D    ++  L  K ++  
Sbjct: 119 SEANDIFKTTLFSNLGSNALEYLKSRNISIEEIKKFEIGFASDKTNLVQ-KLLDKNYNSL 177

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            I +A L I  ++    Y  F NR+IFPI+     +I F GR+ +K    KYLN+ E  +
Sbjct: 178 DIEKANLGIITNSYNKDY--FINRIIFPIKDENNHIIGFSGRSYTKDNEPKYLNTKENKV 235

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K    YN   AL   +              II++EG+MDV+SL +  + N ++ +GT+
Sbjct: 236 FKKSHLAYNIASALKISKAL----------KQIIVLEGFMDVISLSRIDINNTIALMGTS 285

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           L+ Y L L  K +  ++L  DGDDPG++     I +    L     V  +      DPD 
Sbjct: 286 LSNYHLELFKKHNLEVLLFLDGDDPGVQ---ANIKISHQLLKQQINVKIIDNQTSYDPDE 342

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            I        +++I + +  ++ L ++       N P++  +    + + I  + +  L 
Sbjct: 343 LIN-NDLEYLKQIINKPIHPINYLIEKNWSKIDINDPNQIEDFIKKVLSFIVDLNNNILI 401

Query: 422 YYYSQAIRDRLQQLFQKYIT---EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
               + + +  +   Q       E        + N     +     + +        + K
Sbjct: 402 ENTIKKLCELTKISEQTIKKTLDELKTKLNKQQFNKNIIKKPYTINKPISKKNPVDFIKK 461

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ--KYFLPEE 536
           +    E  + ++L+     L +    +  + + + +   +   L + + ++  +     +
Sbjct: 462 EYINAEQRIFVSLLISNQFLDKIAANVEKMIHPDIKYATI--NLINLYNKKIYQGNDINK 519

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             + L E       K+ +  + ++ +   T + +  ++   + +    +K   +L+    
Sbjct: 520 AFELLKEYNLTGFDKKQEEIINNSLITQITIKES--EIDDAFNKLDLYHKHAEVLN---- 573

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            ++K + +   K E  +    I  L     + 
Sbjct: 574 -LKKMLVESKNKTERIQIWNGIDTLKNKKKKR 604


>gi|219684222|ref|ZP_03539166.1| DNA primase [Borrelia garinii PBr]
 gi|219672211|gb|EED29264.1| DNA primase [Borrelia garinii PBr]
          Length = 593

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 139/594 (23%), Positives = 247/594 (41%), Gaps = 64/594 (10%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +     I  ++ QY+   +  +      Y   CPFH EKTPSF  N  +G++YCF C   
Sbjct: 10  IKAKFDIVAIVEQYIKLVKSGS-----TYKGLCPFHAEKTPSFFVNSLQGYFYCFGCKKS 64

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGV---PLPVVDPKIEKKEKIQ--TDLIRLIEV-- 123
           GD + FL  +   ++ ++++ L    G+    L +     +K E     + +  L     
Sbjct: 65  GDVIGFLMDIEKINYNDALKILCEKFGIYYNDLKINRKSEKKSENKDMVSKIYSLNSRLV 124

Query: 124 -ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL---REHLRQKGFS 179
               FF     N   K L Y L  R I    +++F+LGY P +        + L  KG+S
Sbjct: 125 NTIKFF----LNKNQKALDYVLKSRAISKEVVDLFELGYLPFNIKDGLELHDFLVSKGYS 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            E + ++GL    +  A+       RLIFPI+  +G V+ FGGR L  G+  KY+N  ET
Sbjct: 181 SEILRKSGLFSKTNPKASI---LSQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLSET 236

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K + LY F+  LN ++          S+  +ILVEGY+DVL+   +G++  VS+LG
Sbjct: 237 EVFKKKELLYGFYEGLNEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLG 286

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ ++  L L+ + +  I+  FDGDD GL A  KA  + L        V+ V +  G DP
Sbjct: 287 TSFSKEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVKMDFGLDP 343

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              ++  G+ + +K++       + L    +     N   +   +     N IN  K   
Sbjct: 344 ADLLKDKGERSLQKILDNKCDAFEYLLDAYSNKYDLNKTVDLNAMINLFLNLINLSKIDT 403

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  +   + ++L       + ++      +  +   R+    +                
Sbjct: 404 QKKIFLDKLSNKLGVGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY------------ 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  L++ L+ + +      + + D    + + +K++    + F   K F   ++ +
Sbjct: 452 ----ERYLIVALLKNFSYFGIIRRNIIDSDLIDIDARKIFMCFENLFENNKDFSLMDLKR 507

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            L +         + +           +   + D  +     L   KR +L SR
Sbjct: 508 NLKD---------IYKVSEFFFEEILNSGFEVDD--EALIHILIAIKRRKLDSR 550


>gi|75761904|ref|ZP_00741829.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74490612|gb|EAO53903.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 235

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 120/237 (50%), Gaps = 9/237 (3%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL  RGI    IE F++GYA  +  +  + L+++G
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASPAWDAATKILQKRG 178

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
            S   + +AGLLI  +   + YDRFR R++FPI + +G+VIAF GR L +     + 
Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRALGEDTPKVFK 235


>gi|254447696|ref|ZP_05061162.1| DNA primase [gamma proteobacterium HTCC5015]
 gi|198263039|gb|EDY87318.1| DNA primase [gamma proteobacterium HTCC5015]
          Length = 506

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 141/524 (26%), Positives = 237/524 (45%), Gaps = 34/524 (6%)

Query: 78  SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIRLIEVATDFFHHSLKNAR 136
                  F E+++ LA   G+ +P  +   +++++ Q  DL  L++ A+  +   LK   
Sbjct: 1   MEYDNLEFPEAIEELARTLGLEVPREESAGQQQQRRQSADLYDLMQQASLHYQSELKRH- 59

Query: 137 DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSA 196
             +   YL +RG+     + + +G+ P+S   L + L +   +++++  AG+LI  D+  
Sbjct: 60  -SQAIDYLKQRGLSGSTAKDYGIGFVPESWDYLIKRLGKNDRTQQQLESAGMLIRNDSG- 117

Query: 197 TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALN 256
             YDRFRNR++FPIR  RG+ IAFGGR + +GE  KYLNSPET +FHKG+ LY  + A  
Sbjct: 118 RIYDRFRNRIMFPIRDPRGKTIAFGGRVMGEGEP-KYLNSPETPIFHKGRELYGLYEAKR 176

Query: 257 YLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR 316
           + +   +          I++VEGYMDV+ L Q GV+  V+SLGTA T   ++ L++L   
Sbjct: 177 HNKTLEK----------IVVVEGYMDVVMLAQHGVRYAVASLGTACTADHIQRLFRLVDD 226

Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF-EKLI 375
           ++ CFDGD  G  AA++A++  L  L  G +V F+ L  GEDPDS ++  GK AF ++L 
Sbjct: 227 VLFCFDGDRAGRDAAWRALNNCLPALQNGKQVRFLFLPEGEDPDSMVQSEGKEAFEQRLA 286

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +S PL + L  R        + D  +      K  +  I+    +   ++ +   +Q+ 
Sbjct: 287 QQSQPLSEYLIDRLKAQCDTQSIDGISRYAALAKPLLEQIQADTFKRLLTEELARAVQRP 346

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
             +   +                         Q    K +LS  P      ++  L+  P
Sbjct: 347 VDQLFGQ-----------GGLNAPPPTQGNTTQKKPPKAQLSITPP---RLVIAALLAQP 392

Query: 496 AILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
           ++ Q    ++LA +   +         LF    +        +  R  +  F   L +L 
Sbjct: 393 SLAQTVTDEDLALVASLDERAVPFILELFQLLQQHPQLNTAALLDRYRDTPFDSALMELA 452

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                A    A       D      +     +R  L+ R    +
Sbjct: 453 SYEFQAADKIA---IEFQDAFSNLLKRARKQRRQTLIQRPLSTL 493


>gi|288925956|ref|ZP_06419885.1| conserved hypothetical protein [Prevotella buccae D17]
 gi|288337176|gb|EFC75533.1| conserved hypothetical protein [Prevotella buccae D17]
          Length = 1037

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 100/464 (21%), Positives = 186/464 (40%), Gaps = 47/464 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+  I+ +L    I  ++G+++   +R        Y A CPFH EKTPSF    ++  +
Sbjct: 2   IPKTIIEKILDAAHIEEVVGEFLSLQKRG-----VIYRALCPFHQEKTPSFTVTPNRSMF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
           YCF CH  G+ ++FL      ++ E+V+ L    G+ +   +  I++K++   +  L+ +
Sbjct: 57  YCFGCHKGGNAITFLMEHENMTYPEAVKWLGRKYGIEVEEREETIDEKQQRLKRESLLIV 116

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
                  +       +  + + Y   R       +  ++G+AP    +L     QK F  
Sbjct: 117 NATVHKHYREVFLRYKPAQDYAY---RRWGQKYCDEIEIGFAPIDGKALARLPLQKEF-- 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
                  L   G  +   YD F+NR++ PI+     +I F  R +      KYLNS E+ 
Sbjct: 172 -------LQELGLINKQGYDFFQNRIVIPIKDRYQHIIGFTARVM-DDSQPKYLNSKESF 223

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           L++K   ++    A     K+ R          + LVEG  D + L   GVQN V+ LG+
Sbjct: 224 LYNKRNTVFGLDVAWRAAGKAGR----------MYLVEGAPDCMRLHAIGVQNAVADLGS 273

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDP----------GLRAAYKAIDLVLCHLIPGNRVNF 350
           A T  Q +L+ + + ++    D D P                  +      ++    +  
Sbjct: 274 AWTAEQFQLIKRAASKVCFIPDNDPPKGGADYGTGIEAVMKAGKLATEQHLIVSVKEIPI 333

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
               + EDPD++ +       + L         +LW       +    +++++    + +
Sbjct: 334 TEEGKKEDPDTYFKN------QTLFKAVEEEDFILWLAAKLFETSGNTEQKSDAVKQIAH 387

Query: 411 CINHIKDQKLRYYYSQAIRD-RLQQLFQKYITEHSGYGRYWKKN 453
            ++ I D      +  A+      +LF +   E+    R   K 
Sbjct: 388 LLSFIDDDTKLTMFIDALTKYHRGKLFWQKAVENERTRRDSPKE 431


>gi|225619916|ref|YP_002721173.1| DNA primase [Brachyspira hyodysenteriae WA1]
 gi|225214735|gb|ACN83469.1| DNA primase [Brachyspira hyodysenteriae WA1]
          Length = 599

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 146/619 (23%), Positives = 269/619 (43%), Gaps = 54/619 (8%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH---DEKTPSFHCNDSKGFY 62
           + + +LL  + + +++        R        Y   CPFH    E  PS   +D+KG Y
Sbjct: 7   EKLNNLLSRVSLIDILRDRYKVIHRG----GSQYTVQCPFHKDGQETNPSMSVDDAKGIY 62

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRLI 121
            CF+C  KG+ +++L      SF E+VQ L     V +      K  +K+KI  +  R+ 
Sbjct: 63  KCFTCGAKGNVITYLKEKENKSFKEAVQYLGNRFSVDVSGFFSAKTTQKDKIYLESRRIN 122

Query: 122 EVATDFFHHSLK------NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            +A +FF  SL       +   K    YL  R I    I+ F++GYAP S  +L   L +
Sbjct: 123 RIACNFFGKSLFLKDKNGDYFYKDAEKYLKSRKIPFSIIKEFRIGYAPPSWNALMNALAE 182

Query: 176 KGFSEEKIIEAGL-LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
              +   +   GL  +  +N    YD F NR++FPI + R +++ FGGR++  G+  KYL
Sbjct: 183 NKITVNNMNILGLVSVSKNNPNHYYDTFVNRIMFPIINEREEIVGFGGRSI-DGKEPKYL 241

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS E+++F K  +LY    A +Y+ K             I+LVEGYMD ++  + G++NV
Sbjct: 242 NSKESLIFKKKSSLYGINIAKSYIMKQ----------DEIMLVEGYMDTIACHKMGIKNV 291

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V +LGTA+TE   + + K +  +VL  D D+ G++AA  A+   +  L    ++  + + 
Sbjct: 292 VGTLGTAITEEHAKEIKKYTKNVVLALDSDEAGIKAAKMAV---ITLLKFDLKLTILSIQ 348

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN-TPDERAELEIHLKNCIN 413
             +D D F   YG++ F+ L    L   D +   E +    + +  E+  +       ++
Sbjct: 349 ETKDLDEFFTVYGRSRFDILYNNKLNWYDFVIDTEIKKDISSLSIAEKLNVINSFYKYLD 408

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +K +  +      +  +L    + +  ++       +  +  +  K            K
Sbjct: 409 AVKSETEKQMIISYVASKLNVDREAFNKDYLNTYNANQYASGIKYDK------------K 456

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K        E +L+  L  +P++++E  +E++      +  ++ +  L +   E     
Sbjct: 457 VKNIDNKFHYENSLIYLLALNPSLIKEAEREISVDLIKKDITREFYIRLLTLNKEASVED 516

Query: 534 PEEIH------------QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
              I             ++L      E L++L  +++   + S   E             
Sbjct: 517 ALNILGNEYIANQILSKKKLYSENIYEKLEELIIKIKSGCIDSEKKELQNNINLDNLDNI 576

Query: 582 LALYKRFRLLSRQKEEIEK 600
               ++  LL++QKE++ +
Sbjct: 577 YEAARKISLLNKQKEKLHQ 595


>gi|261881227|ref|ZP_06007654.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332000|gb|EFA42786.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 1037

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 98/464 (21%), Positives = 185/464 (39%), Gaps = 47/464 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+  I+ +L    I  ++G+++   +R        Y A CPFH EKTPSF    ++  +
Sbjct: 2   IPKAIIEKILDAAHIEEVVGEFLSLQKRG-----IIYRALCPFHQEKTPSFTVTPNRSMF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
           YCF CH  G+ ++FL      ++ E+V+ L    G+ +   +  I++K++   +  L+ +
Sbjct: 57  YCFGCHKGGNAITFLMEHENMTYPEAVKWLGRKYGIEVEEREETIDEKQQRLKRESLLIV 116

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
                  +       +  + + Y   R       +  ++G+AP    +L     QK F  
Sbjct: 117 NATVHKHYREVFLRYKPAQDYAY---RRWGQKYCDEIEIGFAPIDGKALVRLPLQKEF-- 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
                  L   G  +   YD F+NR++ PI+     +I F  R +      KYLNS ++ 
Sbjct: 172 -------LQELGLINKQGYDFFQNRIVIPIKDRYQHIIGFTARVM-DDSQPKYLNSKDSF 223

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           L++K   ++    A     K          +  + LVEG  D + L   GVQN V+ LG+
Sbjct: 224 LYNKRNTVFGLDVAWRAAGK----------AEQMYLVEGAPDCMRLHAIGVQNAVADLGS 273

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDP----------GLRAAYKAIDLVLCHLIPGNRVNF 350
           A T  Q +L+ + + ++    D D P                  +      ++    +  
Sbjct: 274 AWTAEQFQLIKRAASKVCFIPDNDPPKGGADYGTGIEAVMKAGKLATEQNLIVSVKEIPT 333

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
               + EDPD++ +       + L         +LW       +    +++++    + +
Sbjct: 334 SEEGKKEDPDTYFKN------QALFKAVEEEDFILWLAAKLFETSGNTEQKSDAVKQIAH 387

Query: 411 CINHIKDQKLRYYYSQAIRD-RLQQLFQKYITEHSGYGRYWKKN 453
            ++ I D      +  A+      +LF +   E+    R   K 
Sbjct: 388 LLSFIDDDTKLTMFIDALTKYHRGKLFWQKAVENERTRRDSPKE 431


>gi|269114990|ref|YP_003302753.1| DNA primase [Mycoplasma hominis]
 gi|268322615|emb|CAX37350.1| DNA primase [Mycoplasma hominis ATCC 23114]
          Length = 619

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 134/630 (21%), Positives = 248/630 (39%), Gaps = 65/630 (10%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            +  + +   + I ++I  Y+   ++  N     Y ACCPFH EKTPSF  +  K  + C
Sbjct: 4   DNIFEIVKQKLNIVDVISLYISLTKKGKN-----YVACCPFHGEKTPSFVVSQEKQIFKC 58

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA--GVPLPVVDPKIEKKEKIQTDLIRLIE 122
           F C   G+ ++F+      S +ES++ L +     + L      I    K Q DL  + +
Sbjct: 59  FGCSKSGNLITFIELYTKKSPLESIKELVSKFNLNIDLTRFSNSITTTTKEQEDLYNINQ 118

Query: 123 VATDFFH-HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           +A D F    L+  ++++L  +L +R +    I+ F++G+A   +      + +   S  
Sbjct: 119 IANDIFQFEILEINQNEQLKLFLKKRRLTKPLIKEFEIGFADKDKNLCNMLIAKNCSSFN 178

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
               + +           + F +RL+FPI++  G+++AF GR++      KYLNS ETI+
Sbjct: 179 LANSSLIAS-----NNFDNFFNDRLMFPIKNKDGRIVAFSGRSIYNNVEPKYLNSSETIV 233

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K + ++N++ AL+ + K           S + LVEG  D ++L +  ++N V+ LGTA
Sbjct: 234 FKKHEVMFNYYHALDEIIKK----------SSVYLVEGQFDCIALYKINIKNAVALLGTA 283

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI-PGNRVNFVLLSRGEDPD 360
           L+   L  L      IVL FD D  G  A  K + ++L +      +V+FVL    +DPD
Sbjct: 284 LSIQNLESLRNC--NIVLFFDNDFAGKNATKKNLRIILANQKRYNLKVSFVLNEHSKDPD 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKNCINHIKDQK 419
                        +    + L   L+    +     T + R  EL   L   + ++++  
Sbjct: 342 ELYNIDEGKTLSDIACCPVDLFMYLFNEFKQVFQLETNESRKVELNAELFEFVIYLQEPL 401

Query: 420 LRYYYSQAIRDRLQQL-------------------FQKYITEHSGYGRYWKKNARHRDQK 460
           +     + I +++  +                     K   + S    Y KKN       
Sbjct: 402 ILKLKEKLIENKIFSIETWNKYLFLYGKENFPLHPISKNNLKASLDSEYNKKNYSKNSNY 461

Query: 461 GPSQRL---------------MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ-E 504
              + L                +  + + KL    +L    ++ T+I HP  +      +
Sbjct: 462 KKYEDLNFAYSDPSFDRLDFFEEPLIQQPKLITGRNLVFYLIIKTIIKHPQYIANYQLVD 521

Query: 505 LADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAG 561
            A + + N     +    FL +     K          +          KQ+   +    
Sbjct: 522 FARMAFPNGCQNHKMFLCFLINGIKNNKSIDETNFESYIANNIDLENNAKQIYLDLFKEI 581

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLL 591
           +     E    ++ +     +    + + L
Sbjct: 582 MSLKNKEYTKEELDKNLNNWMKETGQSKDL 611


>gi|163785510|ref|ZP_02180095.1| DNA primase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879220|gb|EDP73139.1| DNA primase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 242

 Score =  230 bits (585), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 126/256 (49%), Gaps = 14/256 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + I ++   + + ++I QY+  ++  +      Y A CPFH EKTPSF+ +  K 
Sbjct: 1   MAIAPESIDEIKSQVNVYDVISQYLPLEKVGS-----SYRALCPFHPEKTPSFYVSPQKN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            + CF C   G  ++F+    G SF E++ ++A   G+ L  +      K +      +L
Sbjct: 56  IWKCFGCGKSGSAITFVMEYEGLSFSEALIKIAEKQGIKLKFIGKD---KFQENKKYYQL 112

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+ + F+   L+ +   +   YL ER I    I+ F +GY+P+    ++   +     E
Sbjct: 113 LELVSKFYQQQLRTS--PKARKYLSERNILPSTIDKFNIGYSPEDDSFIKWIEKNNINKE 170

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           + +    +                R+IFPI++ +G+++ FGGR++   +S KYLNSPET 
Sbjct: 171 DLVKIGVISSVESKKDKF----SGRIIFPIKNLQGKIVGFGGRSIEPHKSPKYLNSPETQ 226

Query: 241 LFHKGKNLYNFFGALN 256
           ++ K + LY  + + +
Sbjct: 227 IYKKSEILYGLYESKD 242


>gi|296127159|ref|YP_003634411.1| DNA primase [Brachyspira murdochii DSM 12563]
 gi|296018975|gb|ADG72212.1| DNA primase [Brachyspira murdochii DSM 12563]
          Length = 601

 Score =  229 bits (584), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 145/618 (23%), Positives = 267/618 (43%), Gaps = 54/618 (8%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH---DEKTPSFHCNDSKGFYYC 64
           + +LL  + + +++        R  N     Y   CPFH    E  PS   +D KG Y C
Sbjct: 9   LNNLLSRVSLIDILRDKYKVVSRGGNK----YTVQCPFHKDGQETNPSMSVDDDKGVYKC 64

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKIQTDLIRLIEV 123
           F+C  KG+ +++L      SF E+++ L     V +      K  KK+KI  +  R+  +
Sbjct: 65  FTCGAKGNVITYLKEKENMSFKEAIEYLGKRFSVDVTDFFSAKSSKKDKIYLESRRINRI 124

Query: 124 ATDFFHHSLK------NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           A +FF  +L       N   K    YL +R I    I+ FK+GYAP S  +L + L +  
Sbjct: 125 ACNFFGKTLLLKDKNGNYFYKEAEKYLKKRKIPFSIIKEFKIGYAPPSWNALIDALSENK 184

Query: 178 FSEEKIIEAGL-LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +   +   GL  +  +N    YD F NR++FPI + R +VI FGGR++  G+  KYLNS
Sbjct: 185 ITINNMHILGLASVSKNNPNHYYDTFVNRIMFPIINEREEVIGFGGRSI-DGKEPKYLNS 243

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
            E+++F K  +LY    A +Y+ K             I+LVEGYMD ++  + G++NVV 
Sbjct: 244 KESLIFKKKSSLYGINIAKSYIMKQ----------DEIMLVEGYMDTIACHKMGIKNVVG 293

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA+TE   + + + +  +VL  D D+        A   +L  L    ++  + +   
Sbjct: 294 TLGTAITEEHAKEIKRYTSNVVLALDSDE---AGIKAAKAAILTLLKFDLKLTILSIKET 350

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN-TPDERAELEIHLKNCINHI 415
           +D D F   Y K  F+ L    L   D + + E +    + + +E+  +       ++ +
Sbjct: 351 KDLDEFFTVYDKKRFDILYNNRLHWYDYIIETEVKKEISSLSIEEKLMIINSFYRYLDVV 410

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K +  +      I  +L    +    ++    +     + + ++K               
Sbjct: 411 KSETEKQMIISHIASKLSVDREALNKDYLRTQKTNHNVSYNDNRKIIKNNTDNKFYY--- 467

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E +L+  L  +P++++E  +E++      +  ++ +  L +   E       
Sbjct: 468 --------ENSLIYLLALNPSLIKEAEREISVDLIKKDITREFYIRLLTLNKEASVEDAL 519

Query: 536 EIH--QRLCERGFG----------ELLKQLDRQVRDAGLWSATTEANIVD-VRQGYQQAL 582
            I   + +  +             E L++L  +++   + S   E      +  G++   
Sbjct: 520 NILGNEHIANQILSRKKLYSENIYEKLEELIIKIKSGDIDSKRMEIINNHSLNDGFEAIC 579

Query: 583 ALYKRFRLLSRQKEEIEK 600
              +   LL++QKE++ +
Sbjct: 580 EKAREIHLLNKQKEKLHQ 597


>gi|282877030|ref|ZP_06285875.1| DNA primase [Prevotella buccalis ATCC 35310]
 gi|281300873|gb|EFA93197.1| DNA primase [Prevotella buccalis ATCC 35310]
          Length = 1037

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 98/464 (21%), Positives = 185/464 (39%), Gaps = 47/464 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+  I+ +L    I  ++G+++   +R        Y A CPFH EKTPSF    ++  +
Sbjct: 2   IPKAIIEKVLDATHIEEVVGEFLSLQKRG-----IIYRALCPFHQEKTPSFTVTPNRSMF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120
           YCF CH  G+ ++FL      +++E+V+ L    G+ +   +  I++K++   +  L+ +
Sbjct: 57  YCFGCHKGGNAITFLMEHENMTYLEAVKWLGRKYGIEVEEREETIDEKQQRLKRESLLIV 116

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
                  +       +  + + Y   R       +  ++G+AP    +L     QK F  
Sbjct: 117 NATVHKHYREVFLRYKPAQDYAY---RRWGQKYCDEIEIGFAPIDGKALAHLPLQKEF-- 171

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
                  L   G  +   YD F++R++ PI+     +I F  R +      KYLNS E+ 
Sbjct: 172 -------LQELGLINKQGYDFFQDRIVIPIKDRYQHIIGFTARVM-DDSQPKYLNSKESF 223

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           L++K   ++    A     K          +  + LVEG  D + L   GVQN V+ LG+
Sbjct: 224 LYNKRNTVFGLDVAWRAAGK----------TEQMYLVEGAPDCMRLHAIGVQNTVADLGS 273

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDP----------GLRAAYKAIDLVLCHLIPGNRVNF 350
           A T  Q +L+ +   ++    D D P                  +      ++    +  
Sbjct: 274 AWTAEQFQLIKRAVSKVCFIPDNDPPKGGADYGTGIEAVMKAGKLATEQHLIVSVKEIPI 333

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
               + EDPD++ +       + L         +LW       +    +++++    + +
Sbjct: 334 TKEGKKEDPDTYFKN------QTLFKAVEEEDFILWLAAKLFETSGNTEQKSDAVKQIAH 387

Query: 411 CINHIKDQKLRYYYSQAIRD-RLQQLFQKYITEHSGYGRYWKKN 453
            ++ I D      +  A+      +LF +   E+    R   K 
Sbjct: 388 LLSFIDDDTKLTMFIDALTKYHRGKLFWQKAVENERTRRDSPKE 431


>gi|294502715|ref|YP_003566777.1| DNA primase [Yersinia pestis Z176003]
 gi|294353174|gb|ADE63515.1| DNA primase [Yersinia pestis Z176003]
          Length = 508

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 140/522 (26%), Positives = 242/522 (46%), Gaps = 41/522 (7%)

Query: 78  SALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135
                  F+ES++ LA + G+ +P        + +   +  L +L+E  + F+  SLK  
Sbjct: 1   MNYDRLEFVESIEELATMHGLEVPYEAGSGTTQIERHQRQSLYQLMESLSAFYQQSLKGQ 60

Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195
             K+   YL  RG+    I+ F +G+AP    +  +   + G S   + +AG+L+  +++
Sbjct: 61  NAKQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESRTALNDAGMLV-TNDT 119

Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255
             +YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET +FHKG+ LY  + A 
Sbjct: 120 GRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPETEIFHKGRQLYGLYEA- 177

Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315
                     V   + + +++VEGYMDV++L Q G+   V+SLGTA T   ++LL++ + 
Sbjct: 178 ---------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGTATTAEHIQLLFRATD 228

Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375
            ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDPD+ +R  GK AFE+ +
Sbjct: 229 NVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVRKEGKDAFEQRM 288

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             + PL   L++        ++PD RA+L       I+ +  + LR Y  Q + ++L  L
Sbjct: 289 EAAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGEALRLYLRQQLGNKLGLL 348

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
               + +            +    K  +                       L+  L+ +P
Sbjct: 349 DDSQLDKLMPKQIDNANTYQPPQLKRTTM--------------------RILIGLLVQNP 388

Query: 496 AILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +       Q L   +        L+  L    + Q      ++ +   +  F + L+ L
Sbjct: 389 QLATLIPSLQGLEQAKLAGLP---LFIELVETCLAQPGLTTGQLLELYRDNKFSQQLETL 445

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                +  +     E   VD       ++   ++  L++R +
Sbjct: 446 ATW--NHMIVEDMVEPTFVDTLASLYDSILEQRQETLIARDR 485


>gi|218507281|ref|ZP_03505159.1| DNA primase [Rhizobium etli Brasil 5]
          Length = 202

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 97/193 (50%), Positives = 133/193 (68%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ ++   +PISN+I + V WD+RKTN  +GDYWACCPFH EK+PSFHC D KG
Sbjct: 1   MRFSNTFLDEIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+VQ++A +AGVP+P+ DP +EK+EK +  LI +
Sbjct: 61  RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L+ A   +   YL +RG+    IE F+LGYAPDSR +L+E L  KG S+
Sbjct: 121 MEMATAFFQDQLQTANGAKARAYLRDRGLTGRTIETFRLGYAPDSRNALKEFLAGKGVSK 180

Query: 181 EKIIEAGLLIDGD 193
           E+I   GL++  +
Sbjct: 181 EQIEACGLVVHEN 193


>gi|86159660|ref|YP_466445.1| DNA primase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776171|gb|ABC83008.1| DNA primase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 452

 Score =  229 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 202/470 (42%), Gaps = 33/470 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P   I++L   I    +IG+ ++  +  +      + A CPFH +KTPSF        +
Sbjct: 2   IPGAVIEELRARIDPVEVIGRRLELRKTGS-----SFSASCPFHADKTPSFRVYPDSRRF 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C  +GD   FL    G  F   V+ LAA AGV +     +          + R  E
Sbjct: 57  KCFGCGARGDAFEFLQRFEGKDFKTVVRELAAEAGVAVEDGARRGVA-APTTGAIERACE 115

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A   +   L     +    YL  RG+D    + F+LGYA    + L   L  +G  E+ 
Sbjct: 116 AALAHWTGRLWGPEGEPARKYLASRGVDEPTAKRFRLGYAAREWHDLHSALVAQGIPEDD 175

Query: 183 IIEAGLLIDGDNSATS-YDRFRNRLIFPIRSSRGQVIAFGGRTLSKG----ESVKYLNSP 237
           ++ AGLL +  +     +DRFR R++FP    R + + F GR +       ++ KYLN P
Sbjct: 176 LLRAGLLRESTSKGPLAHDRFRGRVMFPFLDGRRRAVGFAGRIIPATGDGAQAPKYLNGP 235

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           ET LF KG  ++    A   ++ + R           I+VEGY+D ++L QAG Q  V++
Sbjct: 236 ETPLFRKGHLVFGLAEAAAAIRSTRRA----------IVVEGYLDAIALAQAGRQETVAA 285

Query: 298 LGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR- 355
            GTA+TE+QL L+    +  +VL FD D PGL        +    L  G       L   
Sbjct: 286 GGTAVTEHQLSLVQRSGAEELVLLFDTDAPGLE---APAQVAPALLKAGLSTRIARLPGA 342

Query: 356 -GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP------DERAELEIHL 408
              DPDSF+R +G  A E  I  ++PL + L +R   +R+   P      +++  +   L
Sbjct: 343 AAADPDSFLRSHGLRALEAAIDAAVPLTEWLLERAIASRTAKAPTKAISVEQKLLIVRDL 402

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           +  +        R  + Q I  RL+        E +              
Sbjct: 403 RPFVAAAPAGLPRALFEQRIARRLELYIIALRAELARGRGRPAGGESWPR 452


>gi|318604174|emb|CBY25672.1| DNA primase [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 508

 Score =  229 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 139/522 (26%), Positives = 241/522 (46%), Gaps = 41/522 (7%)

Query: 78  SALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135
                  F+ES++ LA + G+ +P        + +   +  L +L+E  + F+  SLK  
Sbjct: 1   MNYDRLEFVESIEELATMHGLEVPYEAGTGTTQLERHQRQSLYQLMESLSAFYQQSLKGQ 60

Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195
              +   YL  RG+    I+ F +G+AP    +  +   + G S   + +AG+L+  +++
Sbjct: 61  NANQAREYLKHRGLSDEIIQHFAIGFAPPGWDNALKRFGRDGESRTALNDAGMLV-TNDT 119

Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255
              YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET +FHKG+ LY  + A 
Sbjct: 120 GRVYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPETEIFHKGRQLYGLYEA- 177

Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315
                     V   + + +++VEGYMDV++L Q G+   V+SLGTA T   ++LL++ + 
Sbjct: 178 ---------QVSHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGTATTAEHIQLLFRATD 228

Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375
            ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDPD+ +R  GK AFE+ +
Sbjct: 229 NVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVRKEGKDAFEQRM 288

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            E+ PL   L++        ++PD RA+L       I+ +  + LR Y  Q + ++L  L
Sbjct: 289 EEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGETLRLYLRQQLGNKLGLL 348

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
               + +            +    K  +                       L+  L+ +P
Sbjct: 349 DDSQLDKLMPKQAENVNTYQPPQLKRTTM--------------------RILIGLLVQNP 388

Query: 496 AILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +       Q +   +        L+  L    + Q      ++ +   +  F + L+ L
Sbjct: 389 QLATLIPSLQGVEQAKLAGLP---LFIELVETCLAQPGLTTGQLLELYRDNKFSQQLETL 445

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                +  +     E   VD       ++   ++  L++R +
Sbjct: 446 ATW--NHMIVEDMVEQTFVDTLTSLYDSILEQRQETLIARDR 485


>gi|260642309|ref|ZP_05415359.2| putative CHC2 zinc finger [Bacteroides finegoldii DSM 17565]
 gi|260622757|gb|EEX45628.1| putative CHC2 zinc finger [Bacteroides finegoldii DSM 17565]
          Length = 1105

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 100/497 (20%), Positives = 195/497 (39%), Gaps = 46/497 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I  +   + I +++  YV   R+ +          CPFH+E+T SF  + +K  +
Sbjct: 2   ISESTISKVRE-LSIEDVLRPYVKLSRKGS-----ALMGLCPFHEERTGSFSVSPAKNLF 55

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK----KEKIQTDLI 118
           +CFSC+  GD ++F+    G SF+++V+ +A    + +     +  +    +EK +  L+
Sbjct: 56  HCFSCNRGGDAITFIMEKEGFSFMDAVRFIAKHHNIQIEYTQEEYNEEQMAEEKHRESLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERG--IDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             ++    +F + L+   +       D            +  +GYAP       ++ +++
Sbjct: 116 VALDHIQAYFLNCLRTTDNIECKQARDYAYGRWPEEFCSVAGIGYAPIDGNLFVDYCQKR 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235
             +EE + E G+L  G++    Y  FR R++ PIR+  G++IA+  R +    ++ KY+N
Sbjct: 176 SLNEEALFELGMLKRGEDGHI-YAMFRQRIMIPIRNRWGRIIAYTARHIGHNPKAPKYIN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  + ++ KG+ L+    A            R+ ++ + I+VEG  DVL +   G  N V
Sbjct: 235 SSTSPVYSKGETLFGIDRA-----------SRQRNADYFIIVEGAPDVLRMQSVGFDNTV 283

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDP---------------GLRAAYKAIDLVLC 340
           ++LGTA T+ Q   L K +  +    D D                 G  A  K   + + 
Sbjct: 284 AALGTAWTDSQFEQLKKYTSSLCFIPDSDVTEGKPYGAGFEAVMANGAMAIRKGFHVTVR 343

Query: 341 HLIPGNRVNFVLLSRGEDPDSF-IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399
            L              ED            +F K   +   L +  +      + F    
Sbjct: 344 ELPFVKASVVGENIPSEDTFQVKFVKNDADSFIKSKEDYTSLAEKHFIIWLAQKRFLVAS 403

Query: 400 ---ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
              E  +    + + + ++KDQ +     + +     ++  K   +     R   +    
Sbjct: 404 SLVEERKCVAEIADLMRYVKDQLVFDQCIEQLAKLHGKV--KLWRDAVAQARGEARKRNE 461

Query: 457 RDQKGPSQRLMQSSLVK 473
           R       +     L +
Sbjct: 462 RLAPMNEMQRDAELLRQ 478


>gi|160884371|ref|ZP_02065374.1| hypothetical protein BACOVA_02349 [Bacteroides ovatus ATCC 8483]
 gi|156110110|gb|EDO11855.1| hypothetical protein BACOVA_02349 [Bacteroides ovatus ATCC 8483]
          Length = 1105

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 100/497 (20%), Positives = 196/497 (39%), Gaps = 46/497 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I  +   + I +++  YV   R+ +          CPFH+E+T SF  + +K  +
Sbjct: 2   ISESTISKVRE-LSIEDVLRPYVKLSRKGS-----ALMGLCPFHEERTGSFSVSPAKNLF 55

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK----KEKIQTDLI 118
           +CFSC+  GD ++F+    G SF+++V+ +A    + +     +  +    +EK +  L+
Sbjct: 56  HCFSCNRGGDAITFIMEKEGFSFMDAVRFIAKHHNIQIEYTQEEYNEEQMAEEKHRESLL 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERG--IDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             ++    +F + L+   +       D            +  +GYAP       ++ +++
Sbjct: 116 VALDHIQAYFLNCLRTTDNIECKQARDYAYGRWPEEFCSVAGIGYAPIDGNLFVDYCQKR 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235
             +EE + E G+L  G++    Y  FR R++ PIR+  G++IA+  R +    ++ KY+N
Sbjct: 176 SLNEEALFELGMLKRGEDGHI-YAMFRQRIMIPIRNRWGRIIAYTARHIGHNPKAPKYIN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  + ++ KG+ L+    A            R+ ++ + I+VEG  DVL +   G  N V
Sbjct: 235 SSTSPVYSKGETLFGIDRA-----------SRQRNADYFIIVEGAPDVLRMQSVGFDNTV 283

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDP---------------GLRAAYKAIDLVLC 340
           ++LGTA T+ Q   L K +  +    D D                 G  A  K   + + 
Sbjct: 284 AALGTAWTDSQFEQLKKYTSSLCFIPDSDVTEGKPYGAGFEAVMANGAMAIRKGFHVTVR 343

Query: 341 HLIPGNRVNFVLLSRGEDPDSF-IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399
            L              ED            +F K   +   L +  +      + F    
Sbjct: 344 ELPFVKASVVGENIPSEDTFQVKFVKNDADSFIKSKEDYTSLAEKHFIIWLAQKRFLVAS 403

Query: 400 ---ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
              E  +    + + + ++KDQ +     + +     ++  K   +     R   +    
Sbjct: 404 SLVEERKCVAEIADLMRYVKDQLVFDQCIEQLAKLHGKV--KLWRDAVAQARGEARKRNE 461

Query: 457 RDQKGPSQRLMQSSLVK 473
           R +     +     L +
Sbjct: 462 RLEPMNEMQRDAELLRQ 478


>gi|325282203|ref|YP_004254745.1| DNA primase [Odoribacter splanchnicus DSM 20712]
 gi|324314012|gb|ADY34565.1| DNA primase [Odoribacter splanchnicus DSM 20712]
          Length = 1075

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 100/485 (20%), Positives = 195/485 (40%), Gaps = 37/485 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I  +   +PI N++  YV+  ++            CPFH E+T SF     K  +
Sbjct: 2   ISESTINKVRN-LPIENVLKPYVELSKKG-----LTLMGLCPFHSERTASFSVTAHKNLF 55

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKIQTDLI 118
           +CFSC+  GD ++F+      SF E+++ +A    + +         +   + + +  L 
Sbjct: 56  HCFSCNRGGDAITFIMEKENLSFGEAIKFIAKNHNILIEYIDEEQTDEQRAETRHKESLF 115

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERG--IDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            +++    +F  +L+           D               +GYAP   +   ++ R K
Sbjct: 116 VILDCVQKYFLENLRTNMGNESRMARDYAYGRWTEEFCSTAGIGYAPKDGHDFIDYCRNK 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLN 235
             +E+ + E GL   G    + Y  FR+R++ PIR+  G++IA+  R + + ++  KY+N
Sbjct: 176 SLNEKALFELGLFKRG-EDGSVYAMFRHRIMIPIRNKWGRIIAYTARYIGENKNTPKYIN 234

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  +IL+ KG+ L+    A            R+  + + I+VEG  DVL + Q G  N V
Sbjct: 235 SATSILYSKGETLFGIDHA-----------YRQRDTDYYIIVEGAPDVLRMQQVGFDNTV 283

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH----LIPGNRVNFV 351
           ++LGT+ +E Q   L   +  +    D D    +      + V+ +    +  G  V   
Sbjct: 284 ATLGTSWSESQFDQLKPYTSSLCFIPDSDVAEGKTFGPGFEAVMTNGAAAIRKGFYVTVR 343

Query: 352 LLSRGEDP--DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD---ERAELEI 406
            L   + P     I      ++ +   +   L +  +      + F   D   E  +   
Sbjct: 344 ELPFAQHPASGEKILKNDADSYIRCREDYTSLKEKHFIVWLAQKRFLVADSLMEERKYVA 403

Query: 407 HLKNCINHIKDQKLRYYYSQAIRD---RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
            + + + +IKDQ +       +     +++      +       +  +K +   D +  +
Sbjct: 404 EIADLLRYIKDQLVFDQCIGQLAKLHGKVKLWRDAVVQARGEAKKKSEKASSMNDLQREA 463

Query: 464 QRLMQ 468
           + L Q
Sbjct: 464 ELLRQ 468


>gi|224023339|ref|ZP_03641705.1| hypothetical protein BACCOPRO_00032 [Bacteroides coprophilus DSM
           18228]
 gi|224016561|gb|EEF74573.1| hypothetical protein BACCOPRO_00032 [Bacteroides coprophilus DSM
           18228]
          Length = 1094

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 89/336 (26%), Positives = 152/336 (45%), Gaps = 25/336 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I  +   +PI  ++GQYV   +             CPFH E TPSF  N +K  Y
Sbjct: 2   ISESTIDKVRE-LPIETIVGQYVKLAKDGR----TSMKGLCPFHSENTPSFSINLNKNLY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTDL 117
           +CF C+  GD +SF+      +F ++V+ LA    + +            + K+  +  L
Sbjct: 57  HCFGCNRGGDGISFIMEKENLNFQQAVRLLAEKFNILMEDEYDEERTDADKAKQAHKDSL 116

Query: 118 IRLIEVATDFFHHSLKNARDKRLHY--YLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
             ++E    FF  +L+ + +    +           +      +GYAP   ++  +  +Q
Sbjct: 117 YAILEKVQTFFTENLRVSANDDSRHAREYAYNRWPENFCAEAGIGYAPRESHTFMDFCKQ 176

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYL 234
           +G +EE +IE G+L         Y  FR R++ PIR+  G++IA+  R + +  ++ KY+
Sbjct: 177 QGLNEEFLIELGMLRKN-EDDKLYPMFRERIMIPIRNKWGRIIAYTARYIGTHPKAPKYI 235

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS  ++L+ KG+ L+    A            R  +++  I+VEG  DVL L   G++N 
Sbjct: 236 NSVTSLLYTKGETLFGIDRAF-----------RLRNAANFIIVEGAPDVLRLQSIGLENT 284

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRA 330
           V++LGTA  E Q  +L   +  +    D D      
Sbjct: 285 VATLGTAWNENQFEILKHYTSSLCFIPDTDLARDSP 320


>gi|300871652|ref|YP_003786525.1| DNA primase [Brachyspira pilosicoli 95/1000]
 gi|300689353|gb|ADK32024.1| DNA primase [Brachyspira pilosicoli 95/1000]
          Length = 604

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 151/620 (24%), Positives = 264/620 (42%), Gaps = 57/620 (9%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH---DEKTPSFHCNDSKGFY 62
           + +  LL ++ + +++        R        Y   CPFH    E  PS   +DSKG Y
Sbjct: 7   EKLNQLLSNVSLIDILRDRYKVISRG----GSQYTVQCPFHKDGQEANPSMSVDDSKGIY 62

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRLI 121
            CF+C  KG+  ++L       F E+V+ L              K + K+++  +  R+ 
Sbjct: 63  KCFTCGAKGNVFTYLKEKEAMDFKEAVKYLGNRFSFDTSNFFSQKNKHKDQVFVESKRIN 122

Query: 122 EVATDFFHHS--LKNARD----KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           ++A +FF  +  LKN       K    YL +R I    I+ FK+GYAP S  +L + L +
Sbjct: 123 KIACNFFGKNLLLKNNNGEYFYKEAIDYLKKRKIPFSIIKEFKIGYAPPSWNALIKALNE 182

Query: 176 KGFSEEKIIEAGL-LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
              S   I   GL  I  +N    YD F NR++FPI + + ++I FGGR++  G+  KYL
Sbjct: 183 NNISTNNINALGLASISKNNPNHFYDTFINRIMFPIINEKEEIIGFGGRSI-DGKEPKYL 241

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS E+++F K   LY    A  ++ K             +ILVEGYMD ++  +  ++NV
Sbjct: 242 NSKESLIFKKKSALYGINIAKTHIMKK----------DEVILVEGYMDTIACHKMNIKNV 291

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V SLGTA+TE   + + K +  +VL  D D+ G +A   AI   L  L    ++  +L+ 
Sbjct: 292 VGSLGTAITEEHAKEIKKYTNNVVLALDNDEAGQKATKMAI---LTLLKFDLKLTILLIE 348

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET-ENRSFNTPDERAELEIHLKNCIN 413
             +D D F        F+ L  + L   D L K  T ++ +  T +E+  +     N ++
Sbjct: 349 TTKDLDEFFTINNANGFDILYNKKLAWYDFLLKTSTNKDIALLTIEEKLYIVKLFYNYLD 408

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +K +  +      I   L               R        R      Q     S ++
Sbjct: 409 VLKSETEKQMIISHISSELSID------------RDAFNRDYLRTLTNKVQNTKVVSALQ 456

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             +       E +L+  L  +P++++E  +E+       +  ++ +  L +   +     
Sbjct: 457 KPIKDNKFYYENSLIYLLALNPSLIKEAEKEIGVDLIKKDITREFYIRLLTLNKDATAED 516

Query: 534 P------EEIHQRLCERG------FGELLKQLDRQVRDAGLWSATTE---ANIVDVRQGY 578
                  E I  ++  +         E L++L  +++   +     E      +   +G+
Sbjct: 517 ALNVLGNEHIANQIRSKEKLYTDNIQEKLEELIVKIKSGDIDYRREEVLKTTTLQSNEGF 576

Query: 579 QQALALYKRFRLLSRQKEEI 598
           +      +   LL++QKE++
Sbjct: 577 EAICNKAREIHLLNKQKEKL 596


>gi|237725542|ref|ZP_04556023.1| DNA primase [Bacteroides sp. D4]
 gi|229436229|gb|EEO46306.1| DNA primase [Bacteroides dorei 5_1_36/D4]
          Length = 1103

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 97/488 (19%), Positives = 189/488 (38%), Gaps = 40/488 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I+ +     I +++  YV   R+ +          CPFH EKT SF    SK  +
Sbjct: 10  ISETTIRKVRELA-IEDVLSPYVRLSRKGS-----TLMGLCPFHSEKTGSFAVTPSKNLF 63

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKIQTDLI 118
           +CFSC+  GD ++F+      SF  +V+ +A    +P+         +   + + +  L+
Sbjct: 64  HCFSCNRGGDSITFIMEKENLSFSAAVEFIARNHNIPVEYIREERSEEQMAEARHRESLL 123

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERG--IDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            +++    FF  +L+    +                      +GYAP    +  +  R K
Sbjct: 124 TVLDTVQTFFLQNLRTTDKEESLDARAYAYGRWHEEFCAFAGIGYAPKDSQTFMDFCRSK 183

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235
             +EE + E G+   G++  T Y  FR R++ P+R+  G++IA+  R +    ++ KY+N
Sbjct: 184 ALNEELLYELGMFKRGEDGNT-YAMFRQRIMIPVRNRWGRIIAYTARYIGDNRKAPKYIN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  ++++ KG+ ++    A            R   + + I+VEG  DVL +   G  N V
Sbjct: 243 SATSMIYSKGETVFGIDRA-----------ARLRDADYYIIVEGAPDVLRMQSIGYDNTV 291

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDP---------GLRAAYKAIDLVLCHLIPGN 346
           +SLGTA ++ Q   L K    +    D D                  A  +     +   
Sbjct: 292 ASLGTAWSDSQFEQLKKYVSSLCFIPDSDIAEGKPYGPGFEAVMTNGAAAIRKGFHVTVR 351

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF---NTPDERAE 403
            + F  +  G + +         ++ +   +   L +  +      + F    +  E  +
Sbjct: 352 ELPFAEIPSGTEGEVQYAKNDADSYIRSREDYTSLPEKHFIIWLAQKRFLVAGSMVEERK 411

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRD---RLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
               + + + +IKDQ +     + +     +++              R   K A   + +
Sbjct: 412 CVAEIADLLRYIKDQLVYDQCIEQLSRLHGKVKLWRDAVTQARGEARRRNDKPAAMNEMQ 471

Query: 461 GPSQRLMQ 468
             ++ L Q
Sbjct: 472 REAELLRQ 479


>gi|150005932|ref|YP_001300676.1| DNA primase [Bacteroides vulgatus ATCC 8482]
 gi|149934356|gb|ABR41054.1| DNA primase [Bacteroides vulgatus ATCC 8482]
          Length = 1096

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 118/505 (23%), Positives = 186/505 (36%), Gaps = 37/505 (7%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
             D +  +   +PI +++  YV   R        +    CPFH EKTPSF  N SK  Y+
Sbjct: 3   SEDTLDKVRE-LPIESIVEPYVKLSRDGR----LNMKGLCPFHSEKTPSFSLNLSKNLYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTDLI 118
           CF C+  GD + F+      SF ++V  LA   G+P+          +   ++K +  L+
Sbjct: 58  CFGCNRGGDGIRFIMEKENLSFTDAVHFLAKQHGIPVDYEKEEEQSGEAIAEQKHKESLL 117

Query: 119 RLIEVATDFFHHSLK---NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
             +++   FF  SL+            Y   R           LGYAP    + R++ +Q
Sbjct: 118 AALDILQTFFVDSLRLATTEDSWNARCYAYNRWP-EDFCSEAGLGYAPKDSNAFRDYCQQ 176

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYL 234
           KG  EE + E G+L       TSY  FR R++ PIR+  G++IA+  R +       KY+
Sbjct: 177 KGLKEELLFELGMLKRK-EDGTSYPMFRERIMIPIRNRWGRIIAYTARYIGANPHAPKYI 235

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS  ++L+ KG+ L+    A            R   +   I+VEG  DVL L   G++N 
Sbjct: 236 NSATSVLYTKGETLFGIDRAF-----------RLRDAENFIIVEGAPDVLRLQSIGLENT 284

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           V+SLGT+  E QL LL +    +    D D             V+       R  F    
Sbjct: 285 VASLGTSWNENQLNLLKRYKSSLCFIPDSDVAPEGQYGPGFKAVMECGTLAIRKGFHATV 344

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLV-------DMLWKRETENRSFNTPDERAELEIH 407
           +   P        +   ++    ++P                  +             + 
Sbjct: 345 KEL-PFGTWEL-TEDELQEKYEGTIPKDAQREVLVKNDADSYILSEEIYRNLREKHFIVW 402

Query: 408 LKNCINHIKDQKLRYYY-SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
           L           LR       I D L+ +  +++ E                +   +Q  
Sbjct: 403 LAEKQFATASSLLREINCVNQIADLLRYVKDQFVYEQCIEQLSKIYGKARLWKDAVTQAR 462

Query: 467 MQSSLVKGKLSKKPSLREAALLLTL 491
            Q+   K          E   L  L
Sbjct: 463 NQAKRAKQPTMMDKQQEETDALRQL 487


>gi|313678637|ref|YP_004056377.1| DNA primase [Mycoplasma bovis PG45]
 gi|312950814|gb|ADR25409.1| DNA primase [Mycoplasma bovis PG45]
          Length = 646

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 121/670 (18%), Positives = 248/670 (37%), Gaps = 81/670 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P +   +++    I +++  +++  ++        Y A CPFH++  PS   +  +  
Sbjct: 3   RVPNEIANNIISANDIVDVLRDFIELRKKG-----QSYVALCPFHNDTNPSMSIDSRRQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT------ 115
           + CF C+  G+ L+FL      S+ ES++ LA  AG+   + D  I + +          
Sbjct: 58  FKCFVCNTGGNALTFLKLFKKWSYAESLKYLADKAGIEFIIPDISINEYQNESKLSETDI 117

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            +   ++ A  F+   L    +  +  +L  R +  +    + +GYAP +R+        
Sbjct: 118 KVYEALDKANSFYKSELVKTDNPVIKAFLKNRNLSYNDCNKYDIGYAPIARFRDVFATEI 177

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +      I  + + ++        + F+NR+ F IR    +++ F  R L      KY+N
Sbjct: 178 ENDLSILINASLVSLNTKE-----EFFKNRITFGIRDEYNKIVGFSARAL-DDSKPKYIN 231

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S E   F K   LYN                   + + II+ EG+ DV++L +  +   +
Sbjct: 232 SSENYYFKKSSILYNLNNIYESA-----------NFNQIIITEGFFDVIALNKCNIPEAI 280

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
             +GTALT+  +  L +   +I+L  DGDD G  + +K I  +L +         V  + 
Sbjct: 281 CLMGTALTKEHVYKL-QKFKKIILFLDGDDAGQESTFKTIKTLLQNNYTNI--YVVKNNS 337

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET--------ENRSFNTPDERAELEIH 407
             DPD  +  +G  A + LI ++   +  ++             N       +  +    
Sbjct: 338 NLDPDELLNTHGPEAVKSLINDASLYIYFIYDYLRIKFGLYDGYNIIEVNEMQFQKFGSE 397

Query: 408 LKNCINHIK-------DQKLRYYYSQAIRDRLQQ--------LFQKYITEHSGYGRYWKK 452
                  +        ++KL+  Y++ I   + +          Q  I  ++    Y   
Sbjct: 398 FYPFWLKLSQNAATVFNEKLKKEYNRDINFIIDKGNSFNNDFSTQDNINLNNYDEFYDIN 457

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE------AALLLTLINHPAILQEQYQELA 506
           +  + D    SQ   +          KP  +E        +LL L+++P + +  Y+  +
Sbjct: 458 SMPYYDDVVDSQNYNRVPNFSNPKLYKPVKQEYKQNWIEKMLLILLHYPNLQEFFYKNHS 517

Query: 507 DIRY-----------DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
              +            + +L+ ++  L +           +I Q+  E G    + +   
Sbjct: 518 KFPFESIELNSNTLEFDKDLKAIYKKLINHTKISPE-EANKIIQKFSEEGKDHFINKFHF 576

Query: 556 QVRD--------AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK-EEIEKQIAQVT 606
             RD        A ++    + ++          L        ++ +  +EI ++  Q  
Sbjct: 577 STRDIVQLEKDFAEIYKRARDDDLKRYNSYIVNDLGANSSGLEINNKIVKEILEKQRQNK 636

Query: 607 AKGEAEKTAI 616
            K + E    
Sbjct: 637 LKMDDEDQNE 646


>gi|212693061|ref|ZP_03301189.1| hypothetical protein BACDOR_02568 [Bacteroides dorei DSM 17855]
 gi|212664347|gb|EEB24919.1| hypothetical protein BACDOR_02568 [Bacteroides dorei DSM 17855]
          Length = 1102

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 98/490 (20%), Positives = 190/490 (38%), Gaps = 39/490 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I+ +     I +++  YV   R+ +          CPFH EKT SF    S+  +
Sbjct: 9   ISETTIQKVRELA-IEDVLSPYVRLSRKGS-----TLMGLCPFHTEKTGSFAVTPSRNLF 62

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKIQTDLI 118
           +CFSC+  GD ++F+      SF  +V+ +A    +P+         +   + + +  L+
Sbjct: 63  HCFSCNRGGDSITFIMEKENLSFSAAVEFIARNHNIPVKYISEERSEEQMSEARHRESLL 122

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERG--IDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            +++    FF  +LK    +                      +GYAP    +  +  R K
Sbjct: 123 TVLDAVQTFFLQNLKATDKEESLDARAYAYGRWHEEFCAFAGIGYAPKDGQAFMDFCRNK 182

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235
             +EE + E G+   G++  T Y  FR R++ P+R+  G++IA+  R +    ++ KY+N
Sbjct: 183 ALNEELLYELGMFKRGEDGNT-YAMFRQRIMIPVRNRWGRIIAYTARYIGDNRKAPKYIN 241

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  ++++ KG+ ++    A            R   + + I+VEG  DVL +   G  N V
Sbjct: 242 SATSMIYSKGETVFGIDRA-----------ARLRDADYYIIVEGAPDVLRMQSIGYDNTV 290

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH----LIPGNRVNFV 351
           +SLGTA ++ Q   L K    +    D D    +      + V+ +    +  G  V   
Sbjct: 291 ASLGTAWSDSQFEQLKKYVSSLCFIPDSDIAEGKPYGPGFEAVMTNGAAAIRKGFHVTVR 350

Query: 352 LLSRGEDPDS-----FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF---NTPDERAE 403
            L   E P               ++ +   +   L +  +      + F   ++  E  +
Sbjct: 351 ELPFAEIPSEAEGEVQYSKNDADSYIRSREDYTSLPEKHFIIWLAQKRFLVASSMVEERK 410

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
               + + + +IKDQ +     + +     ++  K   +     R   +    +      
Sbjct: 411 CVAEIADLLRYIKDQLVYDQCIEQLSRLYGKV--KLWRDAVTQARGEARRRNDKPAAMNE 468

Query: 464 QRLMQSSLVK 473
            +     L +
Sbjct: 469 MQREAELLRQ 478


>gi|148377532|ref|YP_001256408.1| DNA primase [Mycoplasma agalactiae PG2]
 gi|148291578|emb|CAL58964.1| DNA primase [Mycoplasma agalactiae PG2]
          Length = 645

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 120/669 (17%), Positives = 245/669 (36%), Gaps = 80/669 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               +   +++    I +++  +++  ++        Y A CPFH++  PS   +  +  
Sbjct: 3   RVSNEIANNIIASNDIVDVLRDFIELRKKG-----QSYVALCPFHNDTNPSMSIDTRRQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD----- 116
           + CF C+  G+ L+FL      S+IES++ LA  AG+     +   E   + +       
Sbjct: 58  FKCFVCNTGGNALTFLKLFKKWSYIESIKYLANKAGIDFDYSENTYESDNQNKLSQTDIK 117

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           +  +++ A  F+   L  + +  +  +L +R +  +    + +GY P  R   +E    +
Sbjct: 118 VYEVLDKANSFYKSELIKSNNPVIQAFLKKRNLSYNDCNKYDIGYVPVMR--FKEVFASE 175

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
             +E  I+    LI  +N    +    NR+ F IR+ + Q++ F  RTL      KY+NS
Sbjct: 176 IENELSILTNASLISPNNKEEFFK---NRITFGIRNEQNQIVGFSARTL-DDSKPKYINS 231

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
            +   F K   LYN                + ++ + II+ EG+ DV++L +  +   V 
Sbjct: 232 SDNNYFKKSSILYNLN-----------NVYQESNFNQIIITEGFFDVIALNKCNINEAVC 280

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            +GTALT+  +  L +   +I+L  DGD+ G  + +K I  +L +         V  +  
Sbjct: 281 LMGTALTKEHVYKL-QKFKKIILFLDGDNAGQESTFKTIKTLLQNNYTNI--YVVKSNNK 337

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR--------SFNTPDERAELEIHL 408
            DPD  +  YG  A + LI ++   +  ++                     +  +     
Sbjct: 338 LDPDELLNTYGADAVKNLINDASLYIYFVYDYLRLKFGLYDGFNIINVNEMQFQKFGTEF 397

Query: 409 KNCINHIK-------DQKLRYYYSQAIRDRL-------QQLFQKYITEHSGYGRYWKKNA 454
                ++        ++KL+  Y++ I   +                  + Y + +  N 
Sbjct: 398 YPFWAYLSQNAASVFNEKLKKEYNRDINFIIDKGKNFNNDFSTFNNVNLNNYDKPYDYND 457

Query: 455 RHR-------DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                                  L K    +        +LL L+++P + +  Y+  + 
Sbjct: 458 SFYYDGIVDSQSFNEQPSFNSPKLYKPIKQEYKQNWIEKMLLILLHYPNLQEFFYKNYSK 517

Query: 508 IRY-----------DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
             +            N +L+ ++  L +     +      I ++  E G    + +L+  
Sbjct: 518 EPFESIELNSSALEFNKDLKVIYKKLINHIKIDEGESKS-IIKKFTEEGKDLFISKLNFD 576

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRL---------LSRQKEEIEKQIAQVTA 607
            +D               R    +    Y    L           +  +EI ++  Q   
Sbjct: 577 NKDIVQLENDFAEIYKRARDDDLKRYNYYIVNDLGANGSGIFTNDKIVKEILEKQRQNKL 636

Query: 608 KGEAEKTAI 616
           K + E+   
Sbjct: 637 KMDDEEQNE 645


>gi|67809712|gb|AAY81975.1| DNA primase [Wolbachia pipientis]
          Length = 494

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 146/543 (26%), Positives = 239/543 (44%), Gaps = 58/543 (10%)

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C   GD   F+S   G SF E++++LA++ GV LP      ++  K    L   +++A
Sbjct: 1   FGCLASGDAFEFISQTEGLSFKEALEKLASVTGVELPKNLSITKEDNK----LFLALDLA 56

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
            ++F        ++ +  YL +R I    I+ FK+GYAP S   L+E+L   G  +  +I
Sbjct: 57  ANWFAQK-----NQGVVDYLKQRKISPKIIDKFKIGYAPSS--GLKEYLNSSGIEDRILI 109

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
           + GL+          D F +RLIFPI+S  G+VI FGGR LS  +  KYLNSPE+ LF K
Sbjct: 110 DIGLVNKN-----FRDYFYDRLIFPIQSIAGRVIGFGGRVLSSEQQPKYLNSPESQLFKK 164

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            +NLY    AL+ ++K             I++VEGYMD ++L QAG+ N V+ LGTA++ 
Sbjct: 165 RENLYGLNFALSEIRKK----------QHILVVEGYMDTIALHQAGISNAVAPLGTAISA 214

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
            Q++ LW+ +  I +C DGD  G  AA +  +L L  L PG  + FV L   +DP     
Sbjct: 215 EQIKNLWRFAKEISICMDGDSAGRHAATRVAELALPILEPGYTLKFVTLPSNKDPYDICN 274

Query: 365 --CYGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNTPDERAELEIHLKNCINHIKD 417
              Y K      +  S  L              +N     P++ + LE      +N I +
Sbjct: 275 ELEYKKEDVLTALDHSTKLHSEYLWHHIIDSNLQNYEKLAPEKYSILEHKFMEYVNTISN 334

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             +R YY     ++         +E     +    N++ R  KG         L++ + +
Sbjct: 335 SSIRRYYRDYFYNK--------ASELRSSFKKQIFNSKTRATKGEYLHNKSPELIEAEQN 386

Query: 478 KKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                 +A +L   +  P IL     +++ +   + N E+++L   +      +     E
Sbjct: 387 ------QAVILRIAVEFPEILNRPIFFEQFSHFEFTN-EMKRLQQRIIDVISNKNKLDKE 439

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + Q L +            +          ++ N     +     + L K    L +++
Sbjct: 440 ALLQELKQFNVI--------KYAFEKTSVLNSQLNERKSAEIVWNNIVLLKELNALRKER 491

Query: 596 EEI 598
            E 
Sbjct: 492 TEA 494


>gi|262364692|gb|ACY61249.1| DNA primase [Yersinia pestis D182038]
          Length = 413

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 127/423 (30%), Positives = 211/423 (49%), Gaps = 34/423 (8%)

Query: 78  SALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135
                  F+ES++ LA + G+ +P        + +   +  L +L+E  + F+  SLK  
Sbjct: 1   MNYDRLEFVESIEELATMHGLEVPYEAGSGTTQIERHQRQSLYQLMESLSAFYQQSLKGQ 60

Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195
             K+   YL  RG+    I+ F +G+AP    +  +   + G S   + +AG+L+  +++
Sbjct: 61  NAKQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESRTALNDAGMLV-TNDT 119

Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255
             +YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET +FHKG+ LY  + A 
Sbjct: 120 GRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPETEIFHKGRQLYGLYEA- 177

Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315
                     V   + + +++VEGYMDV++L Q G+   V+SLGTA T   ++LL++ + 
Sbjct: 178 ---------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGTATTAEHIQLLFRATD 228

Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375
            ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDPD+ +R  GK AFE+ +
Sbjct: 229 NVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVRKEGKDAFEQRM 288

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             + PL   L++        ++PD RA+L       I+ +  + LR Y  Q + ++L  L
Sbjct: 289 EAAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGEALRLYLRQQLGNKLGLL 348

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
               + +            +    K  +                       L+  L+ +P
Sbjct: 349 DDSQLDKLMPKQIDNANTYQPPQLKRTTM--------------------RILIGLLVQNP 388

Query: 496 AIL 498
            + 
Sbjct: 389 QLA 391


>gi|213026990|ref|ZP_03341437.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 190

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 7/181 (3%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P        + +   + +L +
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
           L+    DF+  SL +   K    YL +RG+ +  I+ F +G+AP    +  +        
Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDK 178

Query: 180 E 180
           +
Sbjct: 179 Q 179


>gi|254881889|ref|ZP_05254599.1| DNA primase [Bacteroides sp. 4_3_47FAA]
 gi|319641109|ref|ZP_07995812.1| hypothetical protein HMPREF9011_01409 [Bacteroides sp. 3_1_40A]
 gi|254834682|gb|EET14991.1| DNA primase [Bacteroides sp. 4_3_47FAA]
 gi|317387240|gb|EFV68116.1| hypothetical protein HMPREF9011_01409 [Bacteroides sp. 3_1_40A]
          Length = 1100

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 100/485 (20%), Positives = 192/485 (39%), Gaps = 43/485 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                I  +     I +++  YV   R+ +          CPFH E+T SF     K  +
Sbjct: 10  ISESTINKVRNLA-IEDILKPYVRLSRKGS-----TLMGLCPFHSERTGSFAVTPGKNLF 63

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118
           +CFSC+  GD ++F+      +F+E+V  +A   G+P+   D     +   + K +  L+
Sbjct: 64  HCFSCNRGGDGITFIMEKENLTFMEAVTFIAKNNGIPIEYSDEERSEEELAEAKHKESLL 123

Query: 119 RLIEVATDFFHHSLK--NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
             ++    FF  +L+     + +                +  +G+AP    +  E+ R K
Sbjct: 124 ITLDHLQRFFVENLRVAMTEENQAAREYAYGRWSEEFCSIAGIGFAPKDGNTFMEYCRTK 183

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLN 235
           G +EE + E G+L       + Y  FR R++ PIR+  G++IA+  R +   E   KY+N
Sbjct: 184 GLNEEFLFELGMLKRN-EDGSIYAMFRQRIMIPIRNRWGRIIAYTARYIGNNEKAPKYIN 242

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S  +I++ KG+ L+    A            R+  + + I+VEG  DVL +   G  N V
Sbjct: 243 SSTSIIYSKGETLFGIDRA-----------SRQRDADYYIIVEGAPDVLRMQSVGFDNTV 291

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID---------LVLCHLIPGN 346
           ++LGTA T+ Q   L K +  +    D D    +      +         +     +   
Sbjct: 292 AALGTAWTDSQFEQLKKFTASLCFIPDSDTAEGKPYGAGFEAVMANGASAIKKGFHVTVR 351

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
            + F   +   D DS+I C      ++          ++W  +       +  E  +   
Sbjct: 352 ELPFAEQNGKNDADSYIHC------KEDYSSLKEKHFIVWLAQKRFCMAGSLMEERKCVA 405

Query: 407 HLKNCINHIKDQKLRYYYSQA---IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
            + + + ++KDQ +     +    +  +++              +     +   + +  +
Sbjct: 406 EIADLLRYVKDQLIFDQCIEQLGKLHGKVKLWRDAVTQARGEAKKKQGHGSSMNEMQREA 465

Query: 464 QRLMQ 468
           + L Q
Sbjct: 466 ELLRQ 470


>gi|308061510|gb|ADO03398.1| DNA primase DNA G [Helicobacter pylori Cuz20]
          Length = 523

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 106/380 (27%), Positives = 169/380 (44%), Gaps = 30/380 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M      +  L   I I  ++  Y+D+ +   N     + ACCPFHDE++ SF  +  K 
Sbjct: 1   MKITN--LAPLKDRIQIMEVLESYIDFHKVGAN-----FKACCPFHDERSASFIVSPEKN 53

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GD L FL      SF+E+V+ +A I   PL         K +    L  +
Sbjct: 54  IYHCFGCGVSGDALKFLQEYKKLSFLEAVEEVAKIYNYPLEYETD---AKIERNNHLKEI 110

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A + F   LKN   K L+Y    R I    IE + LGY           + ++ F+ 
Sbjct: 111 LAYANNLFKERLKNEP-KVLNYLTQTRAISLEMIEAYDLGYCLHGD----LEVLKERFNA 165

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG-----RTLSKGESVKYLN 235
           + +I  GL  + +           R+  P++ S+GQ+ +F       R L    + KYLN
Sbjct: 166 DDLIACGLFSNKNEDKELRSFCNYRITIPLKDSKGQIRSFSARLCIPRLLKANNAPKYLN 225

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
             ET L++K   LYN+  AL  +++             +I+ EG+ DVL+      +N +
Sbjct: 226 GRETSLYNKTFFLYNYHRALETIKQK----------KQVIICEGFFDVLAYEHFYYKNAI 275

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
            + GTA T+  L  L KL+  +   FD D+ G  A  +A+DL L + +    V  +  S 
Sbjct: 276 CTSGTAFTKEHLAFLNKLNVELCFSFDNDNAGTEATIRALDLCLKNHVTNMSVIKIKDSS 335

Query: 356 GEDPDSFIRCYGKTAFEKLI 375
            +D   + +   +    K+ 
Sbjct: 336 VKDLSDYQKLNKRPNLAKIN 355


>gi|332140161|ref|YP_004425899.1| DNA primase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550183|gb|AEA96901.1| DNA primase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 215

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 10/167 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PRDFI DLL    +  ++   V   +   N     Y ACCPFH+EK+PSF  +  K F
Sbjct: 4   KIPRDFIDDLLSRTDVVEVVDSRVKLKKAGKN-----YQACCPFHNEKSPSFTVSQDKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK----IEKKEKIQTDL 117
           ++CF C   G+ +SF+       F+E+++ LA   G+ +P          E+K++ Q D 
Sbjct: 59  FHCFGCGAHGNAISFIMEFDRLEFVEAIEELARYHGLEVPREKGSRPAMSEEKKQQQQDD 118

Query: 118 IRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAP 163
             ++E    FF H L+     K+   YL  RG+    ++ +++GYAP
Sbjct: 119 YAVMEQVARFFQHQLRQNGNSKKAIEYLKNRGLSGDIVKQWEIGYAP 165


>gi|302545595|ref|ZP_07297937.1| DNA primase [Streptomyces hygroscopicus ATCC 53653]
 gi|302463213|gb|EFL26306.1| DNA primase [Streptomyces himastatinicus ATCC 53653]
          Length = 401

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 105/415 (25%), Positives = 179/415 (43%), Gaps = 23/415 (5%)

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRLIEVATDFFH 129
           D + F+  +   SF E+++RLA+ AG+ L          +++  +T L+     A  F+ 
Sbjct: 1   DTVDFVMKIDHLSFSETIERLASQAGITLRYEQGSATPGRQQGERTRLVEAHRAAAQFYV 60

Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL 189
             L     +    +L ERG D  A + F +GY+P     L  +LR +GF++ ++  +GL 
Sbjct: 61  EQLDGPEAEIGRKFLAERGFDQAAAQHFGVGYSPAGWDHLVRYLRGRGFTDRELTLSGLA 120

Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGKNL 248
              D      DRFR RL++PIR   G+V+ FG R L   ++  KYLN+PET L+ K   L
Sbjct: 121 --QDGRRGPIDRFRGRLMWPIRDITGEVVGFGARKLRDDDNGPKYLNTPETPLYKKSHVL 178

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           Y    A   + K+ R           ++VEGY DV++   AGV   +++ GT+     ++
Sbjct: 179 YGIDLAKKDIAKTSRA----------VVVEGYTDVMACHLAGVTTAIATCGTSFGGDHIK 228

Query: 309 LLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           +L +L        +V  FDGD  G +AA +A +               +   G DP    
Sbjct: 229 ILRRLLMDNSGAEVVFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAITPGGMDPCDLR 285

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
             +G  A E L+     L +   ++     + +T   RA         +  IK+  +++ 
Sbjct: 286 LAHGDGAVEALVESRTQLFEFAIRQIVARHNLDTAVGRAAALDEAAPVVAGIKNSSIQHE 345

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            +  +   L  L  +++ +       W ++      + P QR        G    
Sbjct: 346 SAVHLAGLLGILDTQFVVQRVSQLARWARDRGRGGDQRPDQRGRPQHRGAGPGGP 400


>gi|257457791|ref|ZP_05622952.1| DNA primase [Treponema vincentii ATCC 35580]
 gi|257444841|gb|EEV19923.1| DNA primase [Treponema vincentii ATCC 35580]
          Length = 240

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 84/247 (34%), Positives = 125/247 (50%), Gaps = 12/247 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I  +  H  + +L+  Y   ++R       D+W CCPFH+EKTPSFH    K  
Sbjct: 3   KITTETIDAVNNHTDLVSLVENYTHLEKRG-----HDWWGCCPFHNEKTPSFHVIPDKKM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIR 119
           YYCF C   G  + FL  +   SF E+V+ LA  AG+P+           ++ I+  L+ 
Sbjct: 58  YYCFGCGAGGSTVKFLMEMEKLSFTEAVEALAKRAGIPVVYAEGSYSPAPEDSIKETLLE 117

Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           L +  +  FH+  L          YL+ RG+ +  IE F LGYAP  R  L + L+ KG+
Sbjct: 118 LYKRVSGTFHYFLLHVPEGAAALRYLEGRGVSAEMIEQFNLGYAPADRRWLFKFLQTKGY 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           S E + ++GL        + +    NR++FPI +  GQ +AFGGR L +GE  KYLN+ +
Sbjct: 178 SAEFLAKSGLFSKKHPEVSFFS---NRIMFPICNRHGQPVAFGGRIL-EGEGPKYLNTGD 233

Query: 239 TILFHKG 245
              + K 
Sbjct: 234 LPQYKKR 240


>gi|291320190|ref|YP_003515451.1| DNA primase [Mycoplasma agalactiae]
 gi|290752522|emb|CBH40494.1| DNA primase [Mycoplasma agalactiae]
          Length = 645

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 114/669 (17%), Positives = 241/669 (36%), Gaps = 80/669 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               +   +++    I +++  +++  ++        Y A CPFH++  PS   +  +  
Sbjct: 3   RVSNEIANNIIASNDIVDVLRDFIELRKKG-----QSYVALCPFHNDTNPSMSIDTRRQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD----- 116
           + CF C+  G+ L+FL      S+IES++ LA  AG+     +   E   + +       
Sbjct: 58  FKCFVCNTGGNALTFLKLFKKWSYIESLKYLANKAGIDFDYSENTYESDNQDKLSQTDIK 117

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           +   ++ A  F+   L  + +  +  +L +R +  +    + +GYAP  R+        +
Sbjct: 118 VYEALDKANSFYKSELIKSNNPVIQAFLKKRNLSYNDCNKYDIGYAPVMRFKEVFASEIE 177

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
                    + + ++        + F+NR+ F IR+ + Q++ F  R L      KY+NS
Sbjct: 178 HELSILSNASLISLNNKE-----EFFKNRITFGIRNEQNQIVGFSARAL-DDSKPKYINS 231

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
            +   F K   LYN                + ++ + I++ EG+ DV++L +  +   + 
Sbjct: 232 SDNNYFKKSSILYNLN-----------NVYQESNFNQIVITEGFFDVIALNKCNINEAIC 280

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            +GTALT+  +  L +   +I+L  DGD+ G  + +K I  +L +         V  +  
Sbjct: 281 LMGTALTKEHVYKL-QKFKKIILFLDGDNAGQESTFKTIKTLLQNNYTNI--YVVKSNNK 337

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR--------SFNTPDERAELEIHL 408
            DPD  +  YG  A + LI ++   +  ++                     +  +     
Sbjct: 338 LDPDELLNTYGAHAVKNLINDASLYIYFVYDYLRLKFGLYDGFNIINVNEMQFQKFGTEF 397

Query: 409 KNCINHIK-------DQKLRYYYSQAIRDRL-------QQLFQKYITEHSGYGRYWKKNA 454
                ++        ++KL+  Y++ I   +                  + Y   +  N 
Sbjct: 398 YPFWAYLSQNAASVFNEKLKKEYNRDINFIIDKGKNFNNDFSTFNNVNLNNYDEPYDYND 457

Query: 455 RHR-------DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                                  L K    +        +LL L+++P + +  Y+  + 
Sbjct: 458 SFYYDDIVDSQSFNEQPNFSSPKLYKPIKQEYKQNWIEKMLLILLHYPNLQEFFYKNYSK 517

Query: 508 IRY-----------DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
             +            N +L+ ++  L S     +      I ++  E G    +++L+  
Sbjct: 518 EPFESIELNSSALEFNKDLKVIYKKLISRIKIDESESKS-IIKKFTEEGKDLFIRKLNFD 576

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRL---------LSRQKEEIEKQIAQVTA 607
            +D               R    +    Y    L           +  +EI ++  Q   
Sbjct: 577 NKDIVQLENDFAEIYKRARDDDLKRYNYYIVNDLGANGSGIFTNDKIVKEILEKQRQNKL 636

Query: 608 KGEAEKTAI 616
           K + E+   
Sbjct: 637 KMDDEEQNE 645


>gi|144575119|gb|AAZ43863.2| DNA primase [Mycoplasma synoviae 53]
          Length = 612

 Score =  210 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 113/609 (18%), Positives = 231/609 (37%), Gaps = 67/609 (11%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    +    +   + I ++I  ++   ++  N     Y   CPFH++K  S   N++K 
Sbjct: 1   MKIS-ELKDLINQKLNIVSVISNFISLSKKGNN-----YIGLCPFHEDKNASLTTNETKK 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----D 116
            Y CFSC   G  + F+      SF+E+++  A +A +         ++ ++  T     
Sbjct: 55  IYKCFSCGEAGGIVEFIQKFKKISFMEALKIAATMANIDESEFSFLNKEFKQNFTYDQIK 114

Query: 117 LIRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           +  L++    F+  + LK+   +        +       + F +G+A +          +
Sbjct: 115 IYDLLDFTNTFYKTNYLKSELARNYAKE--RKIDSPQIRQRFDIGFADNK--------TK 164

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +   E       L   G  +        NRL F IR+  G+++AF GR L+   S KY+N
Sbjct: 165 EYLIENDYQLNELKNAGIINENFNSIINNRLTFGIRNQDGKIVAFSGRDLTNNSSAKYVN 224

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S E ++F K   LYN+  A + +           +   + +VEG+MDV++  +AG++NV+
Sbjct: 225 STENLVFKKSSILYNYHNAKDEI----------FNKKEVYIVEGFMDVIAFYKAGIENVI 274

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           + +G  L+   + LL     +I L  D D  G  A YK   L+       N V+ +  + 
Sbjct: 275 AIMGVELSSAHINLLKG--VKINLFLDNDQAGKIATYK---LIKKLANHNNVVSVIKNTY 329

Query: 356 GEDPDSFIRCYGKT-AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC--I 412
            +D D  +   GK    + L    +  +D  +    E+ + N   +   +    +     
Sbjct: 330 NKDADEILLSQGKEVLIKMLNENKVSAIDFAFNSLFEDFNLNKQKDFNNINEFCRKIDDT 389

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             +    ++ Y +  I+++L   +     + S   R + +N      K   + L+     
Sbjct: 390 FGLAPPSIKNYLTSLIKEKLNFDY---KFKASFTPRSFSENKPVYKPKINEKNLLIKLKA 446

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY-----DNNELQKLWSFLFSDFV 527
           + +           LL+ L+++P ++   + +            ++        +     
Sbjct: 447 EKRN---------ELLIMLLSNPDMVNYFFDDSLKWELLTQGTSDDFYSHYEKNISIKDK 497

Query: 528 EQKYFLPEEIHQRLCERGFGE-----------LLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            +   +   I   L ++ + E           LL  +   V     +    +   +D   
Sbjct: 498 SKSDQIKAGIVNFLHKKIYSELSKTYLVDEKQLLDLIKNYVDQNWDYWILKDKENIDTIN 557

Query: 577 GYQQALALY 585
             ++   L 
Sbjct: 558 QIRRITRLL 566


>gi|54020012|ref|YP_115576.1| DNA primase [Mycoplasma hyopneumoniae 232]
 gi|53987185|gb|AAV27386.1| DNA primase [Mycoplasma hyopneumoniae 232]
          Length = 614

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 128/651 (19%), Positives = 246/651 (37%), Gaps = 71/651 (10%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           ++ I  ++ +  I +LI + ++   +        +   CPFH++  PS   +  K  + C
Sbjct: 4   QEIITHIIKNTDIYDLISKKINLKPKGR----DSFVGLCPFHEDTNPSLSVSLKKQIFKC 59

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLIE 122
           FSC   G+ ++F+  +   +F+E++Q L     + L         +   K +   +R  E
Sbjct: 60  FSCQKSGNIINFVMLVQNLNFLEALQFLDKEYNLKLKLNYTTKLEKNYSKDELQALRAFE 119

Query: 123 VATDFF-----------HHSLK--NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169
            A   +             +L   N    +L  +L  RGI    IE FK+G+ P +    
Sbjct: 120 NAVSIYLVELIKIFSLGQQNLIIENPIFSQLFNFLKSRGITREIIEKFKIGFVPTNSILK 179

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
           +  +  K F  E ++   LL    N     D F+ RL+FPI +  G+V+ F GR L    
Sbjct: 180 KFLIDSKFFDGEVLMNYSLLTVNGN-----DFFQKRLVFPIENFEGKVVGFSGRCLDDKI 234

Query: 230 -SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
              KYLNS    LF K + LYN+  A+                  II+ EG+ DV++  +
Sbjct: 235 CQPKYLNSSSNSLFSKTEILYNYANAIK------------QKPKEIIITEGFFDVIAFYK 282

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           AG+QN V+ +GT LT+    +L   +  ++L  D D  G+ A+ K+  +           
Sbjct: 283 AGIQNAVALMGTTLTKKHCEML--NNFTVLLALDSDKAGVEASLKSGLI---LGQNRINT 337

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
             +    G+DPD +   +G  A    +   +   D  +     +   N+ +E        
Sbjct: 338 YILTGFEGKDPDEYFNTFGSEALVNKLSNRINSFDFAYDFYKNSIKNNSSEEIKIFIEKF 397

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              +  +  Q L+   +Q    ++++ F                N      K    ++  
Sbjct: 398 SPFLEILYHQNLQ--LAQIFFKKIKEDFGVSQDSFKFRPSVQHYNELENTLKENEDQIKS 455

Query: 469 SSLVKG------KLSKKPSLREAALLLTLINHPAILQEQYQELA-----DIRYDNNELQK 517
             + K              ++E  +L  ++++  IL +  ++         ++ N    K
Sbjct: 456 IHIKKTTNLLCLAKPISTEIQELKILSQVLDN--ILYDDGEKYNRFKGKQFKFLNPLNNK 513

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELL--KQLDRQVRDAGLWSATTEANIVD 573
           L   + + F  +   + E+I  +L E       L+   ++++ + +   W     A+ +D
Sbjct: 514 LMEEI-NIFGYKSPKMREKIKTKLKEVNAELENLIFKGRIEKLINEDLNWKKEKNADDLD 572

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
                 Q     K    + +          Q+  +   E        +  +
Sbjct: 573 NLMELIQKTRGRKDADNIRKL---------QLDKEMNNEFVDKFFKKIRGL 614


>gi|255013384|ref|ZP_05285510.1| DNA primase [Bacteroides sp. 2_1_7]
          Length = 580

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 123/657 (18%), Positives = 213/657 (32%), Gaps = 97/657 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D +  +     I  +   Y+   R        D  A CPFHDE+ PSF  + +    
Sbjct: 2   ITHDTLLRVRETARIDEVAAGYLTLRRSGK-----DLVALCPFHDERHPSFRISPALNIG 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRLI 121
            CFSC    D +  +  + GC F E+V+ LA   G+ +       E  + + +  ++R  
Sbjct: 57  KCFSCGEAADPIRLVRHMEGCGFEEAVRLLARKYGIEVEEERGTEEAGRHEARQAILRGN 116

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E     F  SL            DE G                                E
Sbjct: 117 EA----FARSLLPYDPAEGITGEDENG------------------------EEDLRALRE 148

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG--ESVKYLNSPET 239
                G+ I   ++   + RFR RL+FP+R + GQ+  F GR        + KY+NS ++
Sbjct: 149 TFSHFGVGICPPDAPEGFRRFRRRLVFPVRITGGQIAGFAGRYRGTEGAGTAKYVNSDDS 208

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
             +HKG+ LY  + A+  ++          +   ++L EGY DV++   AG+++     G
Sbjct: 209 EAYHKGRILYGLYEAVRAVR----------AEGDVLLCEGYKDVIAFHAAGIRHAAGLCG 258

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE  +R++ +L+  + L  D D  G  A  ++  L    L  G  V  + L  G DP
Sbjct: 259 TALTEDHVRMIRRLTGHVTLALDPDPAGQAATLRSARL---LLARGCEVGLLPLPGGMDP 315

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D   R  G  A  +L+                  +       A     +   I  +    
Sbjct: 316 DEVFRRQGAEALRRLV---RTEAVDYLSHRIREAAGRKGGPDAGGIRDVLGEIRLVGSPL 372

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             Y   + +             E S                 P + +             
Sbjct: 373 AVYRRMEELSKATGIPLDVLREELSAS---------------PGEPVRTGPAEVATGLPP 417

Query: 480 PSLREAALLLTLI-NHPAILQE-----------QYQELAD--IRYDNNELQKLWSFLFSD 525
             LRE ALL   + NH  +                 EL+   +         L     + 
Sbjct: 418 ARLRERALLRFCLANHDRMFYAGDGSGISLPAWVASELSAGGMPLTEPAHLDL----LAL 473

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
                +         + +     L+  L     + G      E    ++     +     
Sbjct: 474 LSGGGHPDG------ITDESLSALILSLRSSYPEEG----PPERLPDELLPDEAERQLFL 523

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM--IEG 640
                +  + +    ++   T+  E       +     +  +I +    +++  +EG
Sbjct: 524 YAEPFIHDRLQRTAARLRSATSTDERATCLKELRDCFALSDRIGRALGSQSVRRVEG 580


>gi|312601027|gb|ADQ90282.1| DNA primase [Mycoplasma hyopneumoniae 168]
          Length = 613

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 129/648 (19%), Positives = 250/648 (38%), Gaps = 66/648 (10%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           ++ I  ++ +  I +LI + ++   +        +   CPFH++  PS   +  K  + C
Sbjct: 4   QEIITHIIKNTDIYDLISKNINLKPKGR----DSFVGLCPFHEDTNPSLSVSLKKQIFKC 59

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLIE 122
           FSC   G+ ++F+  L   +F+E++Q L     + L         +   K +   +R  E
Sbjct: 60  FSCQKSGNIINFVMLLQNLNFLEALQFLDKEYNLKLKLNYTTKLEKNYSKDELQALRAFE 119

Query: 123 VATDFF-----------HHSLK--NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169
            A   +             +L   N    +L  +L  RGI    IE FK+G+ P +    
Sbjct: 120 NAVSIYLVELIKIFSLGQQNLIIENPIFFQLFNFLKSRGITREIIEKFKIGFVPTNSILK 179

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
           +  +  K F  E ++   LL    N     D F+ RL+FPI +  G+V+ F GR L    
Sbjct: 180 KFLIDSKFFDGEVLMNYSLLTVNGN-----DFFQKRLVFPIENFEGKVVGFSGRCLDDKI 234

Query: 230 -SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
              KYLNS    LF K + LYN+  A+    K             II+ EG+ DV++  +
Sbjct: 235 CQPKYLNSSSNSLFSKTEILYNYANAIKQNPK------------EIIITEGFFDVIAFYK 282

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           AG+QN V+ +GT LT+    +L   +  ++L  D D  G+ A+ K+  +           
Sbjct: 283 AGIQNAVALMGTTLTKKHCEML--NNFTVLLALDSDKAGVEASLKSGLI---LGQNRINT 337

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
             +    G+DPD +   +G  A    +   +   D  +     +   N+ +E        
Sbjct: 338 YILTGFEGKDPDEYFNTFGSEALVNKLSNRINSFDFAYDFYKNSIKNNSSEEIKIFIEKF 397

Query: 409 KNCINHIKDQKLR--YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA-RHRDQKGPSQR 465
              +  +  Q L+    + + I++        +    S       +N  +  + +  S  
Sbjct: 398 SPFLEILYHQNLQLAQIFFKKIKEDFGVSQDSFKFRPSVQYYNELENTLKENEDQIKSIH 457

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA-----DIRYDNNELQKLWS 520
           + +++ +         ++E  +L  ++    IL +  ++         ++ N    KL  
Sbjct: 458 IKKTNNLWLAKPISTEIQELKILSQVL--DDILYDDGEKYNRFKGKQFKFLNPLNNKLME 515

Query: 521 FLFSDFVEQKYFLPEEIHQRLCE--RGFGELL--KQLDRQVRDAGLWSATTEANIVDVRQ 576
            + + F  +   + E+I  +L E       L+   ++++ + +   W     A+ +D   
Sbjct: 516 EI-NIFGYKSPKMREKIKTKLKEVNAELENLIFKDRIEKLINEDLNWKKEKNADDLDNLM 574

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
              Q     K    + +          Q+  +   E        +  +
Sbjct: 575 ELIQKTRGRKDADNIRKL---------QLDKEMNNEFVDKFFKKIRGL 613


>gi|330898882|gb|EGH30301.1| DNA primase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 128

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 7/129 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPL 119

Query: 121 IEVATDFFH 129
           +  A +F+ 
Sbjct: 120 LTAAAEFYR 128


>gi|26553795|ref|NP_757729.1| DNA primase [Mycoplasma penetrans HF-2]
 gi|26453802|dbj|BAC44133.1| DNA primase [Mycoplasma penetrans HF-2]
          Length = 688

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 121/667 (18%), Positives = 254/667 (38%), Gaps = 79/667 (11%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
             ++I DL+    I +++  Y+   ++       DY A CPFH ++ PS   + SK  + 
Sbjct: 7   NNNWISDLVKSYSIVDVVQHYLQLSKKGN-----DYKAICPFHADRNPSLSVSPSKNVFK 61

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP---LPVVDPKIEKKEKIQTDLIRL 120
           CF+C+  GD L F+      ++ E+++    I  +    L        K  +    +   
Sbjct: 62  CFTCNTGGDSLRFIMLYKKITYTEAIKEFKTIFNITDPNLDRYINSTSKVNEEDQKIYNA 121

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            + A+ +++++L    + +   YL +R ID   I+ +++G+AP        +L +   S 
Sbjct: 122 NKKASFYYNNTLYAKENIKCLQYLKDRHIDDELIKFYEIGFAPKLPRDYLLNLFESTKSN 181

Query: 181 EKIIEAGL----LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
             I    L    L+   +     D F +RLI PI++  G +  F GRT+S  E +KY+N+
Sbjct: 182 HNIDNYQLLNAGLVSLTDKNEFIDFFHDRLIIPIKNEFGNIAGFSGRTISPNEKIKYINT 241

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
             T +F K   L+N F               +     I +VEGYMDV +  + G++NV++
Sbjct: 242 KTTTVFQKENILFNLF------------AFDKTKYEEIFIVEGYMDVFAFRRLGIENVIA 289

Query: 297 SLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           S+GTA T  Q+ ++ K     RI+LC D D+ G  A     + +  +      V      
Sbjct: 290 SMGTAFTINQINIIKKYKNIKRIILCLDNDNAGNEATISLYEKLTKNNFDIFLVRP-YSK 348

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR------------------SFN 396
           + +D D   R   K    K+I + +  V+   ++  +                     F 
Sbjct: 349 KFKDVDELSRQLPKEECLKIINDQIGFVEYQIEKLKQMNLSYKDKKIELSSIVDMISDFA 408

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ------------QLFQKYITEHS 444
              +    +  +      I   +L+    +  +  ++                       
Sbjct: 409 YNQKFFTEDKKMICDFFEIDVPELQSLLDEKAKKSIKGTGKNFQNNKNKNFIHFSNELKQ 468

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                          +  +  +   + +K +   K   +E  L L ++    + +  ++ 
Sbjct: 469 AIDSAIDNEVGKGSNRENNLFVEIKNPIKEREITKLKEQEKTLFLNMLFSKELAEMYFKY 528

Query: 505 LADIRYDNNELQ--------KLWSFLFSDFVEQKYFLPEEIHQRLCERG-----FGELLK 551
           L  + + N + +        ++   +  + ++ K +  E+I  ++           +   
Sbjct: 529 LGYLVFINPKNEDAVVYRVHRIVIEILRENLKNKTYDVEDICNQIINSDKLNGTHKDFFN 588

Query: 552 -QLDRQVRDAGLWSATTEANIVDVRQ------GYQQALALY--KRFRLLSRQKEEIEKQI 602
            +L+R ++   L     +A+ +  +          + + L    R     +  E+ + ++
Sbjct: 589 GELNRYLKINNLPDIKRDASSIREKDPSFEEKILSEGITLLTELRNHQFKQIIEDKKIEV 648

Query: 603 AQVTAKG 609
            ++   G
Sbjct: 649 RELKMNG 655


>gi|71893414|ref|YP_278860.1| DNA primase [Mycoplasma hyopneumoniae J]
 gi|71851541|gb|AAZ44149.1| DNA primase [Mycoplasma hyopneumoniae J]
          Length = 613

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 127/623 (20%), Positives = 243/623 (39%), Gaps = 57/623 (9%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           ++ I  ++ +  I +LI + ++   +        +   CPFH++  PS   +  K  + C
Sbjct: 4   QEIITHIIKNTDIYDLISKNINLKPKGR----DSFVGLCPFHEDTNPSLSVSLKKQIFKC 59

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLIE 122
           FSC   G+ ++F+  L   +F+E++Q L     + L         +   K +   +R  E
Sbjct: 60  FSCQKSGNIINFVMLLQNLNFLEALQFLDKEYNLKLKLNYTTKLEKNYSKDELQALRAFE 119

Query: 123 VATDFF-----------HHSLK--NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169
            A   +             +L   N    +L  +L  RGI    IE FK+G+ P +    
Sbjct: 120 NAVSIYLVELIKIFSLGQQNLIIENPIFFQLFNFLKSRGITREIIEKFKIGFVPTNSILK 179

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
           +  +  K F  E ++   LL    N     D F+ RL+FPI +  G+V+ F GR L    
Sbjct: 180 KFLIDSKFFDGEVLMNYSLLTVNGN-----DFFQKRLVFPIENFEGKVVGFSGRCLDDKI 234

Query: 230 -SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
              KYLNS    LF K + LYN+  A+    K             II+ EG+ DV++  +
Sbjct: 235 CQPKYLNSSSNSLFSKTEILYNYANAIKQNPK------------EIIITEGFFDVIAFYK 282

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           AG+QN V+ +GT LT+    +L   +  ++L  D D  G+ A+ K+  +           
Sbjct: 283 AGIQNAVALMGTTLTKKHCEML--NNFTVLLALDSDKAGVEASLKSGLI---LGQNRINT 337

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
             +    G+DPD +   +G  A    +   +   D  +     +   N+ +E        
Sbjct: 338 YILTGFEGKDPDEYFNTFGSEALVNKLSNRINSFDFAYDFYKNSIKNNSSEEIKIFIEKF 397

Query: 409 KNCINHIKDQKLR--YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA-RHRDQKGPSQR 465
              +  +  Q L+    + + I++        +    S       +N  +  + +  S  
Sbjct: 398 SPFLEILYHQNLQLAQIFFKKIKEDFGISQDSFKFRPSVQHYNELENTLKENEDQIKSIH 457

Query: 466 LMQSSLVKGKLSKKPSLREAALLL-----TLINHPAILQEQYQELADIRYDNNELQKLWS 520
           + +++ +         ++E  +L       L +          +    ++ N    KL  
Sbjct: 458 IKKTTNLWLAKPISTEIQELKILSQVLDDILYHDGEKYNRFKGK--QFKFLNPLNNKLME 515

Query: 521 FLFSDFVEQKYFLPEEIHQRLCE--RGFGELL--KQLDRQVRDAGLWSATTEANIVDVRQ 576
            + + F  +   + E+I  +L E       L+   ++++ + +   W     A+ +D   
Sbjct: 516 EI-NIFGYKNPKMREKIKTKLKEVNAELENLIFKDRIEKLINEDLNWKKEKNADDLDNLM 574

Query: 577 GYQQALALYKRFRLLSRQKEEIE 599
              Q     K    + + + + E
Sbjct: 575 ELIQKTRGRKDADNIRKLQLDKE 597


>gi|262381510|ref|ZP_06074648.1| DNA primase [Bacteroides sp. 2_1_33B]
 gi|262296687|gb|EEY84617.1| DNA primase [Bacteroides sp. 2_1_33B]
          Length = 580

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 122/658 (18%), Positives = 213/658 (32%), Gaps = 99/658 (15%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D +  +     I  +   Y+   R        D  A CPFHDE+ PSF  + +    
Sbjct: 2   ITHDTLLRVRETARIDEVAAGYLTLRRSGK-----DLVALCPFHDERHPSFRISPALNIG 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIRLI 121
            CFSC    D +  +  + GC F E+V+ LA   G+ +       E +    +  ++R  
Sbjct: 57  KCFSCGEAADPIRLVRHMEGCGFEEAVRLLARKYGIEVEEERGTEETERHEARQAILRGN 116

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E     F HSL            DE G                                E
Sbjct: 117 EA----FAHSLLPYDPAEGITGEDENG------------------------EEDLRALRE 148

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPET 239
                G+ I   ++   + RFR RL+FP+R++ GQ+  F GR        + KY+NS  +
Sbjct: 149 AFSHFGVGICPPDAPEGFRRFRRRLVFPVRTTGGQIAGFAGRYRGTEGAGTAKYVNSDNS 208

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
             ++KG+ LY  + A+  ++          +   ++L EGY DV++   AG+++     G
Sbjct: 209 EAYNKGRILYGLYEAVRAVR----------TEGDVLLCEGYKDVIAFHAAGIRHAAGLCG 258

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE  +R++ +L+  + L  D D  G  A  ++  L    L  G  V  + L  G DP
Sbjct: 259 TALTEDHVRMIRRLTGHVTLALDPDPAGQAATLRSARL---LLAQGCEVGLLPLPGGMDP 315

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D   R  G  A  +L+                  +       A     +   I  +    
Sbjct: 316 DEVFRRQGAEALRRLV---RTEAVDYLSHRIREAAGRKGGPDAGGIREVLGEIRLVGSPL 372

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             Y   + +             E S                 P + +             
Sbjct: 373 AVYRRMEELSKATGIPLDVLREELSAS---------------PGEPVRTGPAEVATGLPP 417

Query: 480 PSLREAALLLTLINH---------------PAILQEQYQELADIRYDNNELQKLWSFLFS 524
             LRE ALL   + +               PA +  +     ++         L + L  
Sbjct: 418 TRLRERALLRFCLANHDRMFYAGDGSGISLPAWVASELSA-GEMPLTEPAHLDLLALLSG 476

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                           + +     L+  L     + G      E    ++     +    
Sbjct: 477 SGHPDG----------ITDESLSALILSLRSSYPEEG----PPERLPDELLPDEAERQLF 522

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM--IEG 640
                 +  + +    ++   T+  E       +     +  +I +    +++  +EG
Sbjct: 523 LYAEPFIHDRLQRTAARLRSATSTDERATCLGELRDCFALSDRIGRALGSQSVRRVEG 580


>gi|72080401|ref|YP_287459.1| DNA primase [Mycoplasma hyopneumoniae 7448]
 gi|71913525|gb|AAZ53436.1| DNA primase [Mycoplasma hyopneumoniae 7448]
          Length = 613

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 130/650 (20%), Positives = 250/650 (38%), Gaps = 70/650 (10%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           ++ I  ++ +  I +LI + ++   +        +   CPFH++  PS   +  K  + C
Sbjct: 4   QEIITHIIKNTDIYDLISKNINLKPKGR----DSFVGLCPFHEDTNPSLSVSLKKQIFKC 59

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLIE 122
           FSC   G+ ++F+  L   +F+E++Q L     + L         +   K +   +R  E
Sbjct: 60  FSCQKSGNIINFVMLLQNLNFLEALQFLDKEYNLKLKLNYTTKLEKNYSKDELQALRAFE 119

Query: 123 VATDFF-----------HHSLK--NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169
            A   +             +L   N    +L  +L  RGI    IE FK+G+ P +    
Sbjct: 120 NAVSIYLVELIKIFSLGQQNLIIENPIFFQLFNFLKSRGITREIIEKFKIGFVPTNSILK 179

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
           +  +  K F +E ++   LL    N     D F+ RL+FPI +  G+V+ F GR L    
Sbjct: 180 KFLIDSKFFDDEVLMNYSLLTVNGN-----DFFQKRLVFPIENFEGKVVGFSGRCLDDKI 234

Query: 230 -SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
              KYLNS    LF K + LYN+  A+    K             II+ EG+ DV++  +
Sbjct: 235 CQPKYLNSSSNSLFSKTEILYNYANAIKQNPK------------EIIITEGFFDVIAFYK 282

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           AG+QN V+ +GT LT+    +L   +  ++L  D D  G+ A+ K+  +           
Sbjct: 283 AGIQNAVALMGTTLTKKHCEML--NNFTVLLALDSDKAGVEASLKSGLI---LGQNRINT 337

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
             +    G+DPD +   +G  A    +   +   D  +     +   N+ +E        
Sbjct: 338 YILTGFEGKDPDEYFNTFGSEALVNKLSNRINSFDFAYDFYKNSIKNNSSEEIKIFIEKF 397

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA-----RHRDQKGPS 463
              +  +  Q L+   +Q    ++++ F                N      +  D +  S
Sbjct: 398 SPFLEILYHQNLQ--LAQIFFKKIKEDFGVSQDSFKFRPSVQHYNELENTLKENDDQIKS 455

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA-----DIRYDNNELQKL 518
             + +++ +         ++E  +L  ++    IL +  ++         ++ N    KL
Sbjct: 456 IHIKKTNNLWLAKPISTEIQELKILSQVL--DDILYDDGEKYNRFKGKQFKFLNPLNNKL 513

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELL--KQLDRQVRDAGLWSATTEANIVDV 574
              + + F  +   + E+I  +L E       L+   ++++ + +   W     A+ +D 
Sbjct: 514 MEEI-NIFGYKSPKMREKIKTKLKEVNAELENLIFKGRIEKLINEDLNWKKEKNADDLDN 572

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
                Q     K    + +          Q+  +   E        +  +
Sbjct: 573 LMELIQKTRGRKDADNIRKL---------QLDKEMNNEFVDKFFKKIRGL 613


>gi|71894466|ref|YP_278574.1| DNA primase [Mycoplasma synoviae 53]
          Length = 613

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 112/604 (18%), Positives = 230/604 (38%), Gaps = 66/604 (10%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           +    +   + I ++I  ++   ++  N     Y   CPFH++K  S   N++K  Y CF
Sbjct: 6   ELKDLINQKLNIVSVISNFISLSKKGNN-----YIGLCPFHEDKNASLTTNETKKIYKCF 60

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----DLIRLI 121
           SC   G  + F+      SF+E+++  A +A +         ++ ++  T     +  L+
Sbjct: 61  SCGEAGGIVEFIQKFKKISFMEALKIAATMANIDESEFSFLNKEFKQNFTYDQIKIYDLL 120

Query: 122 EVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +    F+  + LK+   +        +       + F +G+A +          ++   E
Sbjct: 121 DFTNTFYKTNYLKSELARNYAKE--RKIDSPQIRQRFDIGFADNK--------TKEYLIE 170

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
                  L   G  +        NRL F IR+  G+++AF GR L+   S KY+NS E +
Sbjct: 171 NDYQLNELKNAGIINENFNSIINNRLTFGIRNQDGKIVAFSGRDLTNNSSAKYVNSTENL 230

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           +F K   LYN+  A + +           +   + +VEG+MDV++  +AG++NV++ +G 
Sbjct: 231 VFKKSSILYNYHNAKDEI----------FNKKEVYIVEGFMDVIAFYKAGIENVIAIMGV 280

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
            L+   + LL     +I L  D D  G  A YK   L+       N V+ +  +  +D D
Sbjct: 281 ELSSAHINLLKG--VKINLFLDNDQAGKIATYK---LIKKLANHNNVVSVIKNTYNKDAD 335

Query: 361 SFIRCYGKT-AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC--INHIKD 417
             +   GK    + L    +  +D  +    E+ + N   +   +    +       +  
Sbjct: 336 EILLSQGKEVLIKMLNENKVSAIDFAFNSLFEDFNLNKQKDFNNINEFCRKIDDTFGLAP 395

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             ++ Y +  I+++L   +     + S   R + +N      K   + L+     + +  
Sbjct: 396 PSIKNYLTSLIKEKLNFDY---KFKASFTPRSFSENKPVYKPKINEKNLLIKLKAEKRN- 451

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRY-----DNNELQKLWSFLFSDFVEQKYF 532
                    LL+ L+++P ++   + +            ++        +      +   
Sbjct: 452 --------ELLIMLLSNPDMVNYFFDDSLKWELLTQGTSDDFYSHYEKNISIKDKSKSDQ 503

Query: 533 LPEEIHQRLCERGFGE-----------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +   I   L ++ + E           LL  +   V     +    +   +D     ++ 
Sbjct: 504 IKAGIVNFLHKKIYSELSKTYLVDEKQLLDLIKNYVDQNWDYWILKDKENIDTINQIRRI 563

Query: 582 LALY 585
             L 
Sbjct: 564 TRLL 567


>gi|150007929|ref|YP_001302672.1| DNA primase [Parabacteroides distasonis ATCC 8503]
 gi|149936353|gb|ABR43050.1| DNA primase [Parabacteroides distasonis ATCC 8503]
          Length = 580

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 125/653 (19%), Positives = 218/653 (33%), Gaps = 89/653 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              D +  +     I  +   Y+   R           A CPFHDE+ PSF  + +    
Sbjct: 2   ITHDTLLRVRETARIDEVAAGYLTLRRSGKGL-----VALCPFHDERHPSFRISPALNIG 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRLI 121
            CFSC    D +  +  + GC F E+V+ LA   G+ +       E  + + +  ++R  
Sbjct: 57  KCFSCGEAADPIRLVRHMEGCGFEEAVRLLARKYGIEVEEERGTEEAGRHEARQAILRGN 116

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           E     F  SL            DE G                           +    E
Sbjct: 117 ED----FARSLLPYDPAEGITGKDENG------------------------EEDRRALRE 148

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG--ESVKYLNSPET 239
                G+ I   ++   + RFR RL+FP+R++ GQ+  F GR        + KY+NS  +
Sbjct: 149 AFSHFGVGICPPDAPEGFRRFRRRLVFPVRTTGGQIAGFAGRYRGTEGAGTAKYVNSDNS 208

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
             ++KG+ LY  + A+  ++          +   ++L EGY DV++   AG+++     G
Sbjct: 209 EAYNKGRILYGLYEAVRAVR----------TEGDVLLCEGYKDVIAFHAAGIRHAAGLCG 258

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE  +R++ +L+  + L  D D  G  A  ++  L    L  G  V  + L  G DP
Sbjct: 259 TALTEDHVRMIRRLTGHVTLALDPDPAGQAATLRSARL---LLAQGCEVGLLPLPGGMDP 315

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D   R  G  A  +L+                  +       A     +   I  +    
Sbjct: 316 DEMFRRQGAEALRRLV---RTEAVDYLSHRIRKAAGRKGGPDAGGIREVLGEIRLVGSPL 372

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             Y   + +             E S                 P + +             
Sbjct: 373 AVYQRVEELSKATGIPLDVLREELSAS---------------PGEPVRTGPAEVVTGLPP 417

Query: 480 PSLREAALLLTLI-NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--- 535
             LRE ALL   + NH  +      + + I           +++ S+       L E   
Sbjct: 418 ARLRERALLRFCLANHDRMF--YAGDGSGISLP--------AWVASELSAGGMPLTEPAH 467

Query: 536 -EIHQRLCERGF-----GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
            ++   L   G       E L  L   +R +       E    ++     +         
Sbjct: 468 LDLLALLSGSGHPDGITDESLSALILSLRSSYPEEGPPERLPDELLPDEAERQLFLYAEP 527

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM--IEG 640
            +  + +     +   T+  E       +     +  +I +    +++  +EG
Sbjct: 528 FIHDRLQRTAAHLRSATSTDERATCLKELRDCFALSDRIGRALGSQSVRRVEG 580


>gi|317177276|dbj|BAJ55065.1| DNA primase [Helicobacter pylori F16]
          Length = 536

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 103/436 (23%), Positives = 169/436 (38%), Gaps = 34/436 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M      ++ L   + I  ++ +Y+D  +         + ACCPFHDEK+ SF  +  K 
Sbjct: 1   MKIKN--LEPLKERVQIMEVLERYLDLYKVG-----LSFKACCPFHDEKSASFMVSPEKN 53

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GD L FL      SFIE+V+ +A I    L         K +    L  +
Sbjct: 54  LYHCFGCGVSGDTLKFLQEYKKLSFIEAVEEVAKIYNYALEYESD---AKTEKNNHLKEI 110

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A   F   +KN   K LHY    R I    IE + LG+           + ++ FS 
Sbjct: 111 LAYANSLFKERIKNEP-KVLHYLTQTRAISLEMIEAYDLGFCLHGD----LEVLKERFSA 165

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG-----RTLSKGESVKYLN 235
           + +I  GL    +           R+  P++ S+GQ+ +F       R L   +  KY+N
Sbjct: 166 QDLIACGLFSKENQERELKSFCNYRITIPLKDSKGQIRSFSACLCIPRLLKTNQVPKYIN 225

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
              T L++K   L+N+  AL  ++              +I+ EG+ DV++      +N +
Sbjct: 226 GRGTSLYNKSFFLFNYNRALESIK----------EKKQVIICEGFFDVIAYEHFNYKNAI 275

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
            + G A T+  L LL KL+  +   FD D  G  A  +A+DL L + I    V  +    
Sbjct: 276 CTSGVAFTKEHLALLNKLNVELCFSFDNDRAGTEATIRALDLCLKNHITNMSVIKIKDPS 335

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            +D   + +   +    K+                        D   +  +         
Sbjct: 336 IKDLSDYQKLNKRPNLSKINR----FKFYCAYLLRAELPTREKDANYKSILKTLEVFEPF 391

Query: 416 KDQKLRYYYSQAIRDR 431
               L    +  +  +
Sbjct: 392 TQADLIKILNSFLVQK 407


>gi|77415065|ref|ZP_00791126.1| DNA primase [Streptococcus agalactiae 515]
 gi|77158885|gb|EAO70135.1| DNA primase [Streptococcus agalactiae 515]
          Length = 218

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 8/224 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + + 
Sbjct: 1   MAIDKEKISEIKNSVNIVDVIGEVVGLTKTGRN-----HLGLCPFHKEKTPSFNVIEDRQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIR 119
           F++CF C   GD   F+      SF++SVQ LA  +G+PL      ++ KK K    L+ 
Sbjct: 56  FFHCFGCGRSGDVFKFVEDYQHISFLDSVQVLAERSGIPLDTNFKGQVPKKPKANQSLLD 115

Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           +  VA+ F+H  L      +R   YL ERG+    I+ F++G +P  +  L   L  K F
Sbjct: 116 IHRVASGFYHAYLMTTNDGERARQYLAERGVTEDLIKHFQIGLSPGGQDFLYRRLA-KEF 174

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222
            E+ ++ +GL    +NS   YD F NR++FP+ +  G+VIAF G
Sbjct: 175 DEKTLMSSGLFNYSENSNQFYDSFNNRIMFPLTNDIGEVIAFSG 218


>gi|153864878|ref|ZP_01997621.1| DNA Primase [Beggiatoa sp. SS]
 gi|152145627|gb|EDN72379.1| DNA Primase [Beggiatoa sp. SS]
          Length = 163

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 77/165 (46%), Gaps = 8/165 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI +L+  + I +LI  YV   +   N     Y ACCPFH EKTPSF  +  K F
Sbjct: 4   RIPRSFIDELMTRVDIVDLIDSYVSLRKTGRN-----YTACCPFHSEKTPSFTVSPEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-LPVVDPKIEKKEKIQTDLIRL 120
           YYCF C+  G  + FL       F+E+V  LA+  G+  +     + E       DL  +
Sbjct: 59  YYCFGCNAHGSAMGFLMEYAHLDFVEAVHELASRVGIEVVYEQGTQTEVSTTDFDDLYPI 118

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
           +  A  ++   L+ ++      YL  RG+       F LGYAP  
Sbjct: 119 MAQAAQYYRQELRQSQAA--IDYLKNRGLTGEIARDFSLGYAPKG 161


>gi|109948092|ref|YP_665320.1| DNA primase DNA G [Helicobacter acinonychis str. Sheeba]
 gi|109715313|emb|CAK00321.1| DNA primase Dna G [Helicobacter acinonychis str. Sheeba]
          Length = 523

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 99/440 (22%), Positives = 170/440 (38%), Gaps = 36/440 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M      I+ L   I I  ++ +Y+D  +   N     + A CPFHDE++ SF  +  K 
Sbjct: 1   MRITN--IEGLKEQINIVEVLEKYLDLSKAGAN-----FKASCPFHDERSASFMVSREKN 53

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y CF C   GD + FL      SF E+V+ +A++    L         K +    L  +
Sbjct: 54  IYKCFGCDASGDAIRFLQEYKKMSFAEAVEEIASLYHYKLEYAKN---PKTERNERLKAV 110

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A   F   LKN      +       +             P         + +  F  
Sbjct: 111 LAYANTLFKERLKNEERALHYLMHTRALLSPMIEAYDLGYCTPKE-----LEILKNRFEH 165

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-----GESVKYLN 235
           E +I +GL  + + +  S+  +  RL  P++ S G + +F  R+          + KYL+
Sbjct: 166 EDLILSGLFNNKEKNLKSFCNY--RLTIPLKDSHGVIRSFAARSFVFLMPASVNAPKYLH 223

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
             ET LF+K   LYN++ A                   II+ EG+ DV++    G  N V
Sbjct: 224 GRETSLFNKSVFLYNYYRAKP----------FVLQKKQIIICEGFFDVMAYEHFGYLNAV 273

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
            +LGTAL++  L  L KL+  + L FD D  GL A  +A++L     I    V  +  + 
Sbjct: 274 CTLGTALSKEHLAFLEKLNVELCLSFDNDHAGLEATIRALELCWKMHITTVSVIAIKDAS 333

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN----C 411
            +D   + +   +    K+         +     +  +      +  +     +      
Sbjct: 334 MKDLGDYQKANQRPCLSKMNGFEFYCAALFRNDLSAQQKDGNYKKILKTLERFEPFMRLF 393

Query: 412 INHIKDQKLRYYYSQAIRDR 431
              I ++ LR      ++++
Sbjct: 394 CTQILNKVLRQKQIAPVKEK 413


>gi|284931434|gb|ADC31372.1| DNA primase [Mycoplasma gallisepticum str. F]
          Length = 662

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 150/668 (22%), Positives = 273/668 (40%), Gaps = 69/668 (10%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           L   I +S++I +Y+D +++ +N     Y + CPFHD+ TPSF  ND+K  + CFSC+  
Sbjct: 12  LRKKISVSSIISKYLDLEKKGSN-----YKSLCPFHDDNTPSFSVNDTKQVWKCFSCNES 66

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-----PKIEKKEKIQTDLIRLIEVAT 125
           G  + F+      +F+E+V+++  + G+ L  +       K +  ++   +  +L +   
Sbjct: 67  GGVIEFVQKKENLNFVEAVKKIVELEGIDLAAIGYSLNFNKQKAVDESDQEFYKLNQFLA 126

Query: 126 DFFHHSLKNARDKRLHYYLD---ERGIDSHAIEMFKLGYAPDSRY--------SLREHLR 174
              H +L+                  I+   +  F++G+ P S           +     
Sbjct: 127 WRAHSNLRLEFSTNPKLNEFLNKRGLINEELLNNFQIGFHPKSYSLNKLVEDLKVFYQKH 186

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
                +++II + L      S  +   F NR+IFPI++S GQV+ F GR + +   +KYL
Sbjct: 187 LNKTYDDQIILSNLRYIKYISEKNVCYFSNRVIFPIKNSDGQVVGFSGRAIDENNEIKYL 246

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+PET  F KG NLYN+                  ++S I L EGYMDV++L Q G++N 
Sbjct: 247 NTPETDYFIKGHNLYNYS-----------SLELDENNSTIYLCEGYMDVIALYQIGIKNA 295

Query: 295 VSSLGTALTEYQLRLLW---KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           V+ +GTALT+ Q+ L+        RIVL  D D+ G +A    I L+    +        
Sbjct: 296 VAIMGTALTDQQIELIKAKLNQIKRIVLALDNDESGKKATITCIKLLTRKRVHNLYQLDY 355

Query: 352 LLSRGEDPDSFIR-CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
              + +D D       G+   ++LI + L         E ++    +     EL      
Sbjct: 356 SDLKQKDLDEIYHSPDGENQLKELIKKQLSTQKEQENVEYDDEKQLSTQLYQELNELKPE 415

Query: 411 CINHIKDQKLRYYYSQA-IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             + +    L  Y     I ++L+   Q  I     Y   +K            + L + 
Sbjct: 416 QDDQVDITTLIDYNLDKRITEQLRNFIQAVIKICRYYLISFKYLTYKDLSNVRLKILSKI 475

Query: 470 SLVKGKLSKKPSLREAAL-------------LLTLINHPAILQEQYQELADIRY------ 510
           +L K       ++ +  L             L  ++      +   +   D+ +      
Sbjct: 476 NLYKPTRYLFNTMLQITLTNQVMKSLTTNEQLEAILFCYNFTKRFLEGFTDLIFRKVNDL 535

Query: 511 ------DNNELQKLWSFL-FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
                  N    ++++ +    F +  Y + + I  RL    F +L  +L   ++ +   
Sbjct: 536 YLLNAKQNTLNDRIYNKIKLKLFDDTVYLMKKHIENRLNLDLFHKLKNELLSHIKYSKYA 595

Query: 564 SATTE--ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL--IS 619
           +   +   N  ++    +   +    F+ L   K   ++Q+ Q  AKGE  K A +  ++
Sbjct: 596 ALAHDQFVNEEELNAYLKSCTSGIDGFKELYDLKT--KEQLVQWLAKGEIFKLAQIKNLN 653

Query: 620 ILHEVHIQ 627
           IL E+  +
Sbjct: 654 ILEELLKR 661


>gi|282851792|ref|ZP_06261155.1| putative DNA primase [Lactobacillus gasseri 224-1]
 gi|282557034|gb|EFB62633.1| putative DNA primase [Lactobacillus gasseri 224-1]
          Length = 333

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 105/326 (32%), Positives = 178/326 (54%), Gaps = 19/326 (5%)

Query: 49  KTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE 108
           KTPSF  ++ K F+ CF C   G+   FL      +F ESV++ A +A + +P    +  
Sbjct: 7   KTPSFTVSEGKQFFKCFGCGKGGNVFKFLMYQDHLTFPESVKKAAELAHLQMPEGYGEAA 66

Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167
           K       +      AT+F+ H L   +  +R   Y  +R +    ++ FK+GYAPD   
Sbjct: 67  KPLSPLKKMY---RQATEFYQHILLTTKVGERALEYARKRELTDDLLKHFKVGYAPDDDK 123

Query: 168 SLREH-LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
            L  +  ++K +++  + E+GL I+  +    +DRFR+RL+FP+    G  + F GR +S
Sbjct: 124 ILLTYLQQKKEYTDNDLRESGLFIESQDG-QLFDRFRDRLMFPLGDESGYTVGFSGRRIS 182

Query: 227 KGESV-KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
             +++ KY+NSPET +F+K K L++F  A    +          S   +IL EGYMDV++
Sbjct: 183 NDKTIAKYMNSPETKIFNKSKLLFHFAEAKKAAR----------SEKHLILYEGYMDVIA 232

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
             +AG+Q+ V+S+GT+LT  Q+ +L +++P I++ +DGD PG+ AA +A  L     + G
Sbjct: 233 AYKAGIQSGVASMGTSLTTEQVYMLRRITPNILVNYDGDPPGIHAAERATKLFG--QVQG 290

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAF 371
             +  ++L    DPD +++   K + 
Sbjct: 291 FNLGIIVLPENLDPDEYVKNMEKKST 316


>gi|229093363|ref|ZP_04224470.1| DNA primase [Bacillus cereus Rock3-42]
 gi|228690019|gb|EEL43820.1| DNA primase [Bacillus cereus Rock3-42]
          Length = 190

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + ++ +     I  +IG+YV   ++  N     Y+  CPFH E +PSF  +  K  
Sbjct: 4   RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118
           ++CF C   G+  SFL  + G +F E+VQ+L    G+ +        ++E I  D   + 
Sbjct: 59  FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118

Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +  E+   ++HH L           YL ERGI    IE F++GYA  +  +  + L+++ 
Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLERGITKEMIEKFEIGYASPAWDAATKILQKEV 178

Query: 178 FSEEKI 183
           +     
Sbjct: 179 YRCLVW 184


>gi|154492308|ref|ZP_02031934.1| hypothetical protein PARMER_01942 [Parabacteroides merdae ATCC
           43184]
 gi|154087533|gb|EDN86578.1| hypothetical protein PARMER_01942 [Parabacteroides merdae ATCC
           43184]
          Length = 403

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 95/451 (21%), Positives = 172/451 (38%), Gaps = 54/451 (11%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           +  I++L   + I  +IG+Y   +R         +   CPFH ++ PS   N+ KG + C
Sbjct: 3   KQEIQELKASLSIREVIGRYTKLNRVGR-----RWMGLCPFHGDRHPSLSVNEEKGSFVC 57

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-VPLPVVDPKIEKKEKIQTDLIRLIEV 123
           ++C  +GD  +F+S +    F+E+  +L+  +G + +   D K  +    +  +      
Sbjct: 58  YACGERGDVFAFVSKIENVGFVEAANKLSIDSGQLAIEGKDNKEARLLPERLAIKEK--- 114

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
                    K   D      ++ +    +   +  L  A      L       G      
Sbjct: 115 ---------KENSDAEQLPVVNSQLSIENEAFLALLLPAGSGCSELTPTWLDFG------ 159

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLNSPETIL 241
               +          +   RNRL+FP+R   G++  F  R LS  +    KY+NS    L
Sbjct: 160 ----VGQSPCLVPERWKAMRNRLVFPVRDEEGRLAGFAARRLSDEDRDKPKYVNSETGGL 215

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           + K + LY  + A   +++             + LVEGY DVL++  AG ++ V+  GTA
Sbjct: 216 YRKSELLYGLYEAREAIRR----------EGSVFLVEGYKDVLAMHAAGFRHTVALCGTA 265

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           L    + LL + +  + +  D D  G +AA   + ++      G     + L  G+DPDS
Sbjct: 266 LCTGHIALLKRYTTSVRVMLDADKAGRKAADAIVPVLAGE---GMEAVRIGLPEGDDPDS 322

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             R  G+ AF   + E+                 +               ++ + + + R
Sbjct: 323 LFRRLGREAFAAYVREA-----------VRQTRPSEEQVLLGRIRKGIGLLSGVAEAEKR 371

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452
               + + D L QL    +         W+ 
Sbjct: 372 ERLLRVLEDCLTQLKGLSVGACRPATMDWRW 402


>gi|305432455|ref|ZP_07401617.1| DNA primase [Campylobacter coli JV20]
 gi|304444494|gb|EFM37145.1| DNA primase [Campylobacter coli JV20]
          Length = 249

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/261 (28%), Positives = 129/261 (49%), Gaps = 13/261 (4%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I++L   + I ++I  Y++  ++ +      +   CPFH +K PS H N +KGFY
Sbjct: 2   ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCVCPFHADKNPSMHINPTKGFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   GD   F+      SF ++V+++A +    L       ++K + + +L  ++ 
Sbjct: 57  HCFACKAGGDAFKFVMDYEKLSFTDAVEKIANLCNFTLSYT----KEKNENKKELRTILP 112

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
               +F  +LK    K    YL +R ++   I  F+LG+A  S  S+R    +K   E+ 
Sbjct: 113 SLNAYFKSNLK--HHKEALDYLYKRTLNDQDIAKFELGFAGSSEDSIRLFHNEKILLEDA 170

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    L    D +   Y  F  R+ FPI   +  ++ FGGRTL+   + KY+NSP+ ILF
Sbjct: 171 MSVGAL--KKDKNNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVAAKYVNSPQNILF 228

Query: 243 HKGKNLYNFFGALNYLQKSIR 263
            K +  Y F  A   + K  +
Sbjct: 229 DKSRIFYAFNIAKENIAKKKK 249


>gi|294660420|ref|NP_853172.2| DNA primase [Mycoplasma gallisepticum str. R(low)]
 gi|284812079|gb|AAP56740.2| DNA primase [Mycoplasma gallisepticum str. R(low)]
 gi|284930654|gb|ADC30593.1| DNA primase [Mycoplasma gallisepticum str. R(high)]
          Length = 662

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 149/668 (22%), Positives = 274/668 (41%), Gaps = 69/668 (10%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           L   I +S++I +Y+D +++ +N     Y + CPFHD+ TPSF  ND+K  + CFSC+  
Sbjct: 12  LRKKISVSSIISKYLDLEKKGSN-----YKSLCPFHDDNTPSFSVNDTKQVWKCFSCNES 66

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-----PKIEKKEKIQTDLIRLIEVAT 125
           G  + F+      +F+E+V+++  + G+ L  +       K +  ++   +  +L +   
Sbjct: 67  GGVIEFVQKKENLNFVEAVKKIVELEGIDLAAIGYSLNFNKQKAVDESDQEFYKLNQFLA 126

Query: 126 DFFHHSLKNARDKRLHYYLD---ERGIDSHAIEMFKLGYAPDSRY--------SLREHLR 174
              H +L+                  I+   +  F++G+ P S           +     
Sbjct: 127 WRAHSNLRLEFSTNPKLNEFLNKRGLINEELLNNFQIGFHPKSYSLNKLVEDLKVFYQKH 186

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
                +++II + L      S  +   F NR+IFPI+++ GQV+ F GR + +   +KYL
Sbjct: 187 LNKTYDDQIILSNLRYIKYISEKNVCYFSNRVIFPIKNADGQVVGFSGRAIDENNEIKYL 246

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+PET  F KG NLYN+                  ++S I L EGYMDV++L Q G++N 
Sbjct: 247 NTPETDYFIKGHNLYNYS-----------SLEFDENNSTIYLCEGYMDVIALYQIGIKNA 295

Query: 295 VSSLGTALTEYQLRLLW---KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           V+ +GTALT+ Q+ L+        RIVL  D D+ G +A    I L+    +        
Sbjct: 296 VAIMGTALTDQQIELIKAKLNQIKRIVLALDNDESGKKATITCIKLLARKRVHNLYQLDY 355

Query: 352 LLSRGEDPDSFIR-CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
              + +D D       G+   ++LI + L         E +++   +     EL      
Sbjct: 356 SDLKQKDLDEIYHSPDGENQLKELIKKQLSTQKEQENVEYDDQKQLSTQLYQELNEIKPE 415

Query: 411 CINHIKDQKLRYYYSQA-IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             + +    L  Y     I ++L+   Q  I     Y   +K            + L + 
Sbjct: 416 QDDQVDITTLIDYNLDKRITEQLRNFIQAVIKICRYYLISFKYLTYKDLSNVRLKILSKI 475

Query: 470 SLVKGKLSKKPSLREAAL-------------LLTLINHPAILQEQYQELADIRY------ 510
           +L K       ++ +  L             L  ++      +   +   D+ +      
Sbjct: 476 NLYKPTRYLFNTMLQITLTNQVMKSLTTNEQLEAILFCYNFTKRFLEGFTDLIFRKVNDL 535

Query: 511 ------DNNELQKLWSFL-FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
                  N    ++++ +    F +  Y + + I  RL    F +L  +L   ++ +   
Sbjct: 536 YLLNAKQNTLNDRIYNKIKLKLFDDTVYLMKKHIENRLNLDLFHKLKNELLSHIKYSKYA 595

Query: 564 SATTE--ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL--IS 619
           +   +   N  ++    +   +    F+ L   K   ++Q+ Q  AKGE  K A +  ++
Sbjct: 596 ALAHDQFVNEEELNAYLKSCTSGIDGFKELYDLKT--KEQLVQWLAKGEIFKLAQIKNLN 653

Query: 620 ILHEVHIQ 627
           IL E+  +
Sbjct: 654 ILEELLKR 661


>gi|307128545|ref|YP_003880575.1| DNA primase [Candidatus Sulcia muelleri CARI]
 gi|306483007|gb|ADM89877.1| DNA primase [Candidatus Sulcia muelleri CARI]
          Length = 566

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 117/639 (18%), Positives = 237/639 (37%), Gaps = 91/639 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             +  I+ +     +  +I  ++   +         Y A  PF++EK PS   +  K  +
Sbjct: 2   INKKIIERIFEISKVEEVISDFICLKKIG-------YKALSPFYNEKHPSLIVSPLKQIW 54

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
             FS    G+ ++FL      +F+ES++ LA    + +             +  L  +  
Sbjct: 55  KDFSSGKGGNVVNFLMEYEKFNFLESIKYLAKKYNIEI---------INSYKESLFIINN 105

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
            A  FF   L   ++      L +R  + + +  F +GYAP ++++              
Sbjct: 106 YAKFFFKKELNLNKNS-----LFKRQFNLNQLNKFDIGYAPYNKFTNS------------ 148

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
            ++ G  +     +   +   NR+IFPI S  G ++ FG          +  ++PE+ ++
Sbjct: 149 ALKKGFKLKLLKKSGLINNNPNRIIFPIHSISGLILGFG-------VGGRSFSTPESEIY 201

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
           HKG NLY  + A  Y+ K           +F  L EGY DV+S+ Q G++NVV+SLGT+L
Sbjct: 202 HKGNNLYGIYQAKKYILKY----------NFCYLTEGYTDVISMYQFGIKNVVASLGTSL 251

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           T  Q+ L+ + +  + + +D D+ G+    + ID+    L     +  + L   EDPDSF
Sbjct: 252 TLNQIFLIKRFTKNLTIIYDSDESGINYCLRLIDI---LLEQDINLKIISLPFKEDPDSF 308

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            +          +  +              +      ++      + N ++ I D  +R 
Sbjct: 309 FKKKNYNKIINYLKINT-------FNFINFKLNFFKKKKFLFIKDIINSLSKISDLIIRD 361

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y +     L       ++E         K                  L + K      +
Sbjct: 362 IYLKYFCILLNINEYIILSEIEYLLLNKFKQKSFHF-----------ILNEYKKFNTLIV 410

Query: 483 REAALLLTLINHPAIL-----------QEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            E  LL   + +  ++            ++   + + R+  N    ++    + +V    
Sbjct: 411 LEEKLLQISLLYGNVIITSNNYIPLKGNKKITIIEEFRFQMNIYNLVFYLEKNKYVFNVI 470

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
             P+ +  ++  +   +L+  +D+              +I  + Q + + L L  +   +
Sbjct: 471 NKPKFVFNKIFYKDIIKLISLIDQY------EFDFFNLDIKKISQYFIETL-LRYKSYYI 523

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           S   +     + +   K         I+ L  +   I++
Sbjct: 524 SNIIKNKFSILNR-EKKFHQNFLLKTIN-LTNIKNNINK 560


>gi|254497835|ref|ZP_05110601.1| DNA primase DnaG [Legionella drancourtii LLAP12]
 gi|254352913|gb|EET11682.1| DNA primase DnaG [Legionella drancourtii LLAP12]
          Length = 503

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 121/543 (22%), Positives = 223/543 (41%), Gaps = 47/543 (8%)

Query: 78  SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARD 137
              L   FI++++ LA   G+ +P       +K     DL +L+   + ++   LK+   
Sbjct: 1   MNYLNQGFIDAIETLATRLGLTVPRD--GQAEKNNASQDLYKLLSAISLYYQKQLKHE-G 57

Query: 138 KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT 197
           +    YL  RG+     ++++LGYA +  ++L    +    ++  +I  G+LI  D    
Sbjct: 58  QLAINYLRGRGLSGDIAKLYQLGYANEGWHNL---EKAFPRNQRDLITTGMLIKNDEG-K 113

Query: 198 SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNY 257
            YDR+RNR++FPI    G++I FGGR LS  +  KYLNSPET++F K + LY        
Sbjct: 114 IYDRYRNRVMFPIHDRHGRIIGFGGRVLSADQKPKYLNSPETVIFQKSRELYGLHQ---- 169

Query: 258 LQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI 317
                    ++ S  +II+VEGYMDV++L Q G+ N V++LGTA + Y ++LL K +  +
Sbjct: 170 ------ILSQKKSPEYIIIVEGYMDVIALAQHGIMNAVATLGTATSTYHIQLLAKHTKAL 223

Query: 318 VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
             CFDGD+ G +AA++ ++  L  L  G   +F+ L  G DPDS +R  GK  F   + +
Sbjct: 224 FFCFDGDNAGRQAAWRGLESSLPQLHQGLDASFMFLPDGHDPDSLVRAEGKENFLNRLKQ 283

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           + PL         ++ +   P  + +L    K  +  I +   +      +         
Sbjct: 284 ATPLHRFFLDTLAKDINLRNPAGKTQLINVTKPLLQKINEGSYKQLLIDDLARMTHIESH 343

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
           +     S               K    R                      +  L+ +P I
Sbjct: 344 RLNQLISDQQVTQAPAVTQEKPKTALTRTPM----------------RIAVALLLQNPEI 387

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
             +  +++     +  E + +   L              + +   +  + E + +L    
Sbjct: 388 YTKSIEQIDLNALNTKEHE-ILLKLLQQLAANPKTNTASLIETWRDHHYFEFINRLAAW- 445

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKR--FRLLSRQKEEIEKQ--IAQVTAKGEAEK 613
                     +    ++ + +   +   ++    L+ RQ  +  +Q  + +       + 
Sbjct: 446 --------NHQVPEQELVKEFIDIIIFLQKQNQELIIRQLIDKSRQQGLTETERLHLQKM 497

Query: 614 TAI 616
              
Sbjct: 498 LQE 500


>gi|329121140|ref|ZP_08249771.1| DNA primase [Dialister micraerophilus DSM 19965]
 gi|327471302|gb|EGF16756.1| DNA primase [Dialister micraerophilus DSM 19965]
          Length = 525

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 128/558 (22%), Positives = 246/558 (44%), Gaps = 39/558 (6%)

Query: 77  LSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFHHSL-K 133
           L  +   +F E++++LA IA + +P      + +KK ++   +  + E+A+ +F++ L K
Sbjct: 2   LKKMDNITFPEAIEKLAEIARIEIPEKEMTYEEKKKAELSKQIYDVTELASIYFYNCLTK 61

Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193
               K  + Y  +R +    I+ FKLG+AP   + L      K     +I++    + G 
Sbjct: 62  TDIGKEGYEYFLKRHLSDEIIKKFKLGFAPPEWHRLYSDFTSKKKISPEILQIA-GLVGY 120

Query: 194 NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFG 253
            +   YD FRNR +FPI + +G+ +AFGGR +      KYLNSPE+++F+K + L+  + 
Sbjct: 121 KNGKHYDIFRNRCMFPILNLKGKTVAFGGRVM-DDSLPKYLNSPESVIFNKRRLLFALYQ 179

Query: 254 ALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKL 313
           AL  ++               I+VEGYMD +SL   G+ NVV+SLGTA T  Q RLL + 
Sbjct: 180 ALPEIR----------EKRQAIMVEGYMDAISLHAHGITNVVASLGTAFTIEQARLLKRY 229

Query: 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
           +  ++  +D D  G  A  +A+++       G ++  V L  G+DPD FI  +G+ A+ +
Sbjct: 230 ADELIFNYDMDAAGQNATKRALEIAG---NVGLKLRVVRLGDGKDPDEFINAHGREAYLE 286

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + ++ P  D L+    +    NT + + ++   + + +    +      +   +  R+Q
Sbjct: 287 SVAQAQPATDYLFSAALKRYDSNTLEGQQKILADMFDVLLAKGNSFYFNSFIVKMARRMQ 346

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
                  +E   Y R  KKN+     +  S+++           K+  L E       + 
Sbjct: 347 MDEGLIRSEALRYAR--KKNSNVFISQKQSEKIKSEDYETKYNMKRQKLLEEGFFRYCLF 404

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
           +  +  E ++ L    + ++  ++L+  +     E      E   ++L  R +   L +L
Sbjct: 405 NNKL-PEGWELLKKYEFADDFHKELFR-ILEKLSETNITEKET--EKLLPREYVPRLAEL 460

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                  G                         +   L R+     +++A++  + + +K
Sbjct: 461 LMNSNSVGNLPMEEYIRP--------------LKKVYLQREYRVHTQRVAEL-LETDPQK 505

Query: 614 TAILISILHEVHIQIHQI 631
                 I  ++  +I  +
Sbjct: 506 AREEQLICIKLSEEIRNL 523


>gi|255521270|ref|ZP_05388507.1| DNA primase [Listeria monocytogenes FSL J1-175]
          Length = 143

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +     I ++IG YV   ++  N     Y   CPFH EKTPSF  +  K  
Sbjct: 3   RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115
           ++CF C   G+  SFL    G +F+ESV+++A ++     + LP       + K+     
Sbjct: 58  FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPEERDTSNLPKETSETA 117

Query: 116 DLIRLIEVATDFFHHSLKNA 135
            ++ + ++    +H+ L   
Sbjct: 118 KMVEMHQLTAKLYHYILMET 137


>gi|284101718|ref|ZP_06386019.1| DNA primase [Candidatus Poribacteria sp. WGA-A3]
 gi|283830346|gb|EFC34575.1| DNA primase [Candidatus Poribacteria sp. WGA-A3]
          Length = 364

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 182/373 (48%), Gaps = 22/373 (5%)

Query: 70  KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRLIEVATDF 127
            GD  +FL    G  F+E+V+ LA  AG+PLP    +     +   +  L  L  +A  +
Sbjct: 2   GGDIFTFLMRKEGLEFLETVKDLAERAGIPLPRNASQGLTPSQTGQRKRLEGLHALADTW 61

Query: 128 FHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEA 186
           F  +L +  + +    YL  RG++   ++ F +GYAP S   L  HL ++G +   +  +
Sbjct: 62  FQQNLHDPSKGRPALAYLTGRGLELETLKEFGMGYAPPSWDGLTNHLTRQGATPSDLEAS 121

Query: 187 GLLIDGD-----NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
           GL+   D       A  YDRFR R++ PI   R  VIAFGGR   +G + KYLNSP+T L
Sbjct: 122 GLVAVKDAQGRSKPARFYDRFRGRVMLPIHDLRANVIAFGGRVFEEG-TPKYLNSPDTAL 180

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KG+ LY    A                   ++LVEGY DVL++ QAG++ V + LGTA
Sbjct: 181 FQKGRVLYALHKARE----------TNPHLDSLMLVEGYFDVLAMHQAGIRQVAAPLGTA 230

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT     LL + +  +VL FDGD  G  A  +A+D+       G  V  V++  G DPDS
Sbjct: 231 LTPEHAVLLRRFANTVVLIFDGDAAGTGAVLRALDV---FRDSGVTVKVVVMPPGHDPDS 287

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           ++R +G   F  L   +L L++    +  E  +  T +ER      +   +  + +   +
Sbjct: 288 YVRAHGAERFLALRDRALTLLEFAVAQRLEGATHATIEERTRRVDDILGILAKVSNPIEK 347

Query: 422 YYYSQAIRDRLQQ 434
               Q + +RL  
Sbjct: 348 NEQVQRVAERLGV 360


>gi|321310209|ref|YP_004192538.1| DNA primase [Mycoplasma haemofelis str. Langford 1]
 gi|319802053|emb|CBY92699.1| DNA primase [Mycoplasma haemofelis str. Langford 1]
          Length = 611

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 133/620 (21%), Positives = 243/620 (39%), Gaps = 55/620 (8%)

Query: 16  PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75
            I  +I  Y+   +R  N     YW+ CPFH + +PS   +  K  + CFSC V GD ++
Sbjct: 10  SILKVIQNYIKTSQRGAN-----YWSICPFHQDSSPSLSISPEKNIFKCFSCGVSGDAIA 64

Query: 76  FLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135
           F+  +  C++++S+ +++ I G+     +  +  KE   + L ++ EV    +H  L N 
Sbjct: 65  FVMKIEKCNYVQSIYKISEILGLD---PNQYLTAKESSNSKLFKINEVVALAYHKFLFNK 121

Query: 136 RDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRY----SLREHLRQKGFSEEKIIEAGLLI 190
            ++    Y  +ERG+    I+ ++LGYAP+               +  S        L I
Sbjct: 122 VNQHHLEYLTNERGLSKEIIQKYQLGYAPEEDILKDVFRSYLSANEKESFGDEEYEKLGI 181

Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250
                  S   F++R+IFPI +  GQ++ F GR + K    KYLN+    +F+K   +YN
Sbjct: 182 FNYGRGASDPFFKDRIIFPIYNRHGQIMGFSGRAI-KNVEPKYLNTKSNSIFNKKYCIYN 240

Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310
                                S + L EG+ DVLS  QAG++N V+ +G++L    L ++
Sbjct: 241 I--------------QNLQEGSPVYLYEGFFDVLSSEQAGIKNGVAVMGSSLDSSILDVI 286

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIRCYGK 368
              S +IV CFD D  G     K  +     ++ G  V  + L     +D D +++    
Sbjct: 287 KNYSKKIVCCFDNDSTGRNFTIKVFEN---LVLNGFSVYVLDLLDTKSKDIDEYLKESSS 343

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH------IKDQKLRY 422
            + ++L   S            +    N    +  +E  L            +K    R 
Sbjct: 344 DSSKRLKEPSHFFEWYRKLYIQDKDISNPLVLQPLIEESLGFLFVSNTSSPVMKGGVDRE 403

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
           Y   ++  ++   F K  ++ S        N +++  K      +  +L    + +KP  
Sbjct: 404 YALDSL--KIIFDFYKLSSDFSDEKHAPIINRKYQSYKQAVTASLIRTLPTRHIPQKPRS 461

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            +   L  L  +  I +        +   N    ++     S   E K FL     +   
Sbjct: 462 VDKFHL-LLTKYSKIFKYIENHGESLGDANEWFFEIPEEYVSASREAKLFLSLLKKKLFG 520

Query: 543 ERGFGELLKQLDRQVRDAG-----------LWSATTEANIVDVRQGYQQALALYKRFRLL 591
                E +  L   + +              + +  E  + ++R  +++   L  + R +
Sbjct: 521 GEESQEEIDNLANLIPEKDKDIPSIEEFFNCYFSLNEGIMEEIRNMWKKNELLDVKERWI 580

Query: 592 SRQKEEIEKQIAQVTAKGEA 611
             +  E++K I     K  +
Sbjct: 581 KTE--ELKKLILDNQQKSSS 598


>gi|47459126|ref|YP_015988.1| DNA primase [Mycoplasma mobile 163K]
 gi|47458455|gb|AAT27777.1| DNA primase [Mycoplasma mobile 163K]
          Length = 614

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 116/575 (20%), Positives = 236/575 (41%), Gaps = 55/575 (9%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           ++   +LL  + I  +I  ++   ++  N     Y A CPFH++  PS   +  K  + C
Sbjct: 4   KNIFDELLSQVDIVTVINNHLSLIKKGKN-----YIAICPFHEDSKPSLTVSVEKQVFKC 58

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRLIE 122
           F+C+V G+ +SF+   L  SF+E+ + +A   G+ L   + K ++    K Q  +I    
Sbjct: 59  FACNVGGNAISFVEKFLKISFLEASKMIAQENGINLEFSEKKQQRVILTKTQEQIIEANN 118

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           +A  F+ +++ + ++K L  +L+ R I+   +  F       S  +L+E + +K  +  +
Sbjct: 119 LALSFYKYNIFDKQNKSLVSFLNSRNINDANLIDF-FELGFASNENLKEKIMKKDSTINE 177

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETIL 241
            I +   +    +   ++   NR+IFPI+     ++ F GR +    +  KYLN+ E  +
Sbjct: 178 AILSVASLINSKNGNFFE---NRMIFPIKDENDFLVGFSGREIVPNSNNVKYLNTSENAI 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+KG  LYNF  A  ++               +I+ EG+MDV++L + G++NV + +GT+
Sbjct: 235 FNKGNVLYNFNKAKEFI----------TYKKELIICEGFMDVIALYKIGIKNVTALMGTS 284

Query: 302 LTEYQLRLLWKLSP-RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
            +   ++L   +   +IV   DGD  G  A  K+I      +     +  +      DPD
Sbjct: 285 FSNNHIKLFNNIKDIKIVFFLDGDLAGKNATIKSI---NKIIKYKFEIEIINNPLKMDPD 341

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN------- 413
             +   G++  E+++     + + L     E  S N  ++  +        +        
Sbjct: 342 EILNRLGQSRLEEIVKSRKNVFEFLLDYFLEINSLNNSEKIIDFCKIYSQYLQHAKQDIK 401

Query: 414 -----------HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                       I  + +  Y++    +   Q +     + +    Y K+N    + +  
Sbjct: 402 IIILDKIKKTEKIPQELIDKYFAFKTNNLENQDYNVLDFDQNYKNTYQKENKYKANYQNN 461

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINH-----PAILQEQYQELADIRYDNNELQK 517
              +      +   S      E  +L    ++       ++     +  D    N  L +
Sbjct: 462 FWNINDFKFWQLNQS------EKVILSLFDSYRKDPKKELIVLFSIKKNDFVLKNLALNE 515

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           +   L +   +++     E+     +     LLKQ
Sbjct: 516 IAEKLVTSLDKKEVIKASELFDSKEKEFIDNLLKQ 550


>gi|185179022|ref|ZP_02964771.1| DNA primase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188024056|ref|ZP_02996807.1| DNA primase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518324|ref|ZP_03003838.1| DNA primase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195867979|ref|ZP_03079976.1| DNA primase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|225550988|ref|ZP_03771934.1| DNA primase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|184209113|gb|EDU06156.1| DNA primase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188019092|gb|EDU57132.1| DNA primase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188998041|gb|EDU67138.1| DNA primase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195660375|gb|EDX53635.1| DNA primase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|225378803|gb|EEH01168.1| DNA primase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
          Length = 648

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 127/641 (19%), Positives = 252/641 (39%), Gaps = 55/641 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               +  + +   + ISN+I  Y+   ++  N     YWA CPFH++   S   +D K  
Sbjct: 3   KITNNVFQAIRDAVNISNVIQNYIKVIKKGNN-----YWAICPFHNDTNESLSISDKKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIR 119
           + CFSC+  GD + F++      ++ + Q +     + L +++   KI  +E  +  L  
Sbjct: 58  FKCFSCNHAGDVIKFVADYKKIPYVLAAQEIIRTMNLDLKLLNHLQKISPEETKKNKLFD 117

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS-------RYSLREH 172
           L +    +F + L N  +K +  YL +R ++   +E FK+GYAP +       + +    
Sbjct: 118 LNKQIQKWFINFLNNKNNKHVLDYLVKRNLNQSDLEYFKIGYAPGNDQLLNLIKSNYDNL 177

Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
           +++    E   +     +  D     +D F +R+IF I      ++ F GR ++  ++ K
Sbjct: 178 VQENDEFELNKLINNSFLVIDKKGDYHDFFNDRIIFSIYDHLNNIVGFSGRIINNEKTPK 237

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLN+  T++F K + LYNF              +  + +  + +VEG+MD ++  ++   
Sbjct: 238 YLNTKTTLVFKKDEILYNFN-----------NVITLDDNHQLFIVEGFMDAITTHKSNKP 286

Query: 293 NVVSSLGTALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           NVV+++G  L+   L  +     + ++LCFD D  G  A  K + L L +L     V   
Sbjct: 287 NVVATMGVELSNKHLETIANYGIKDLILCFDNDHAGFLATKKQV-LKLANLAFNIFVVDH 345

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
             +  +D D +   YG  A  KL+ + L + + L    T     +TP  +   +      
Sbjct: 346 KNNDCKDIDEYANKYGYDATNKLLEQQLHISEFLLLDITNTN-KSTPSLKHSYKQDCFEI 404

Query: 412 INHIKDQKLRYYYSQAIRD-------RLQQLFQKYITEHSGYGRYWKKN------ARHRD 458
           I    D      Y   I          L+++ ++ + +        K+N         + 
Sbjct: 405 IQKYGDIFYIDKYVDFINQTLQMDEVLLKKIIEELLIKKQSKPIQNKENEYSYVYQDKKY 464

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
            K   Q   QS   K     K +     L++ L+ +   L     ++ +    N  L  +
Sbjct: 465 HKTKKQITQQSFNNKKLPLTKINKHFNHLVIILLMNRKFLNRFDSQIRNKFSRNQNL--I 522

Query: 519 WSFLFSDFVEQKYF-----LPEEIHQRLCE--RGFGELLKQLDRQV-----RDAGLWSAT 566
            + +   ++            E   + + +    + E++ Q  + +              
Sbjct: 523 VNIIEDFYLYNFEVNAILKDSEIFIEFINKNYAKYDEIINQFTKIIQVVKYNPKLDNLIA 582

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            E         + +    + +   L+    + ++QIA    
Sbjct: 583 FELAKNSFLYEWYKNEIKHLKLTNLNLDINDNQEQIANNEK 623


>gi|171920681|ref|ZP_02931906.1| DNA primase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|188524321|ref|ZP_03004358.1| DNA primase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|198273289|ref|ZP_03205825.1| DNA primase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554496|ref|YP_002284941.1| DNA primase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225550583|ref|ZP_03771532.1| DNA primase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|171903417|gb|EDT49706.1| DNA primase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|195660149|gb|EDX53529.1| DNA primase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|198249809|gb|EDY74589.1| DNA primase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209541997|gb|ACI60226.1| DNA primase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225379737|gb|EEH02099.1| DNA primase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 648

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 127/641 (19%), Positives = 251/641 (39%), Gaps = 55/641 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               +  + +   + ISN+I  Y+   ++  N     YWA CPFH++   S   +D K  
Sbjct: 3   KITNNVFQAIRDAVNISNVIQNYIKVIKKGNN-----YWAICPFHNDTNESLSISDKKQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIR 119
           + CFSC+  GD + F++      ++ + Q +     + L +++   KI  +E  +  L  
Sbjct: 58  FKCFSCNHAGDVIKFVADYKKIPYVLAAQEIIRTMNLDLKLLNHLQKISPEETKKNKLFD 117

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS-------RYSLREH 172
           L +    +F + L N  +K +  YL +R ++   +E FK+GYAP +       + +    
Sbjct: 118 LNKQIQKWFINFLNNKNNKHVLDYLVKRNLNQSDLEYFKIGYAPGNDQLLNLIKSNYDNL 177

Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
           +++    E   +     +  D     +D F +R+IF I      ++ F GR ++  ++ K
Sbjct: 178 VQENDEFELNKLINNSFLVIDKKGDYHDFFNDRIIFSIYDHLNNIVGFSGRIINNEKTPK 237

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLN+  T++F K + LYNF              +  + +  + +VEG+MD ++  ++   
Sbjct: 238 YLNTKTTLVFKKDEILYNFN-----------NVITLDDNHQLFIVEGFMDAITTHKSNKP 286

Query: 293 NVVSSLGTALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           NVV+++G  L+   L  +     + ++LCFD D  G  A  K + L L +L     V   
Sbjct: 287 NVVATMGVELSNKHLETIANYGIKDLILCFDNDHAGFLATKKQV-LKLANLAFNIFVVDH 345

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
             +  +D D +   YG  A  KL+ + L + + L    T     +TP  +   +      
Sbjct: 346 KNNDCKDIDEYANKYGYDATNKLLEQQLHISEFLLLDITNTN-KSTPSLKHSYKQDCFEI 404

Query: 412 INHIKDQKLRYYYSQAIRD-------RLQQLFQKYITEHSGYGRYWKKN------ARHRD 458
           I    D      Y   I          L+++ ++ + +        K+N         + 
Sbjct: 405 IQKYGDIFYIDKYVDFINQTLQMDEVLLKKIIEELLIKKQSKPIQNKENEYSYVYQDKKY 464

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
            K   Q   QS   K     K +     L++ L+ +   L     ++ +    N  L  +
Sbjct: 465 HKTKKQITQQSFNNKKLPLTKINKHFNHLVIILLMNRKFLNRFDSQIRNKFSRNQNL--I 522

Query: 519 WSFLFSDFVEQKYF-----LPEEIHQRLCE--RGFGELLKQLDRQV-----RDAGLWSAT 566
            + +   ++            E   + + +    + E++ Q  + +              
Sbjct: 523 VNIIEDFYLYNFEVNAILKDSEIFIEFINKNYAKYDEIINQFTKIIQVVKYNPKLDNLIA 582

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            E         +      + +   L+    + ++QIA    
Sbjct: 583 FELAKNSFLYEWYNNEIKHLKLTNLNLDINDNQEQIANNEK 623


>gi|149003981|ref|ZP_01828789.1| DNA primase [Streptococcus pneumoniae SP14-BS69]
 gi|147758040|gb|EDK65046.1| DNA primase [Streptococcus pneumoniae SP14-BS69]
          Length = 169

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 6/155 (3%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG  +   +   N     Y   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+    G +F+E+VQ L    G+ +       +K       L  + E 
Sbjct: 58  CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117

Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMF 157
           A  F+H  L      +    YL +RG+    ++ F
Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHF 152


>gi|330938477|gb|EGH42080.1| DNA primase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 122

 Score =  197 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 7/121 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P+ FI DLL    I +++   V   +   N     Y ACCPFH EKTPSF  +  K FY
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           YCF C   G+ L F+       F ++V+ LA  AG+ +P        + ++   + L  L
Sbjct: 60  YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPL 119

Query: 121 I 121
           +
Sbjct: 120 L 120


>gi|254729571|ref|YP_003084253.1| DNA primase [Cyanophage PSS2]
 gi|254211723|gb|ACT65671.1| DNA primase [Cyanophage PSS2]
 gi|265524919|gb|ACY75811.1| predicted protein [Cyanophage PSS2]
          Length = 524

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 108/529 (20%), Positives = 192/529 (36%), Gaps = 104/529 (19%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M      I  +     I +   Q     R        ++ A CP+HD+K PS   + S  
Sbjct: 1   MRLSNTTIDAVRERASIVDQFNQ-AKLKRTGR-----EFVAQCPWHDDKRPSLTISPSTN 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK----EKIQTD 116
             YCF C    D + +L    G SF +SV RLA   G+ +     + ++K    +  +  
Sbjct: 55  RAYCFVCARGVDSIGWLQDREGLSFSDSVVRLAERYGIQVEADSAEDQEKWRAEQAERQL 114

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           +    E     F   L  +  +        RG+    I  +++G+               
Sbjct: 115 IFSQREKQRTQFVEMLAGSPGEEYL---KGRGLTDETIAEWRIGWNGS------------ 159

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
                                       R++FP+  ++G+ IAF GR L      KY NS
Sbjct: 160 ----------------------------RVMFPLDDAQGRTIAFTGRVL-DDTKPKYKNS 190

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
               L+ K + ++    A N + K+ R          +++ EG MDV+S  Q GV+N+V+
Sbjct: 191 QNDALYQKAELVFGLSRARNEITKTTR----------VVICEGQMDVISCWQEGVRNMVA 240

Query: 297 SLGTALTEYQLRLL--WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVLL 353
             G++LT+  +  +     +  IVLCFDGD  G++AA +A+  +    + G   +  + L
Sbjct: 241 VSGSSLTQEMIDRIIKQTHAKEIVLCFDGDLGGMKAADRALRSLQELALTGDITLKILTL 300

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G DP          A  +LI ++   V   + RE      N P +    E  +K  + 
Sbjct: 301 PEGCDPADLA-----DAMPELIADAPHWVQWWFDREVGQIDLNDPRQIVAAEAGVKRILR 355

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +    LR +  +  ++ L+ +                              +  +++  
Sbjct: 356 VLPTGALREFVRRRAKEVLKAI----------------------------PDVKPATVRT 387

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
            K        E   L   ++           L+D+ Y +  + + W  +
Sbjct: 388 RKEIDACLWAERRALRLYLHDAGSRP----ALSDLNYKDPLMDQAWKLI 432


>gi|331027982|ref|YP_004421532.1| DNA primase [Synechococcus phage S-CBS2]
 gi|294805595|gb|ADF42434.1| DNA primase [Synechococcus phage S-CBS2]
          Length = 534

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 116/534 (21%), Positives = 199/534 (37%), Gaps = 74/534 (13%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M      ++ +    P+S L+        R        ++   C +HD+K PS   ND K
Sbjct: 1   MAVSPATLRAIKA-APLSALVEATGAQLKRVG-----HEFLTQCLWHDDKNPSLTINDDK 54

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTD 116
           GF +C  C   GD + +L    G S+ E+ +  A I GV     D   E   ++   +  
Sbjct: 55  GFCFCHVCRGGGDAIDYLGQRRGLSWREAAEAAADILGVRFETDDEDPEVTARRNAERKA 114

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            I ++E   D +  +L+  +  R+   L  RG+ + A   F +G+A              
Sbjct: 115 AIAILEAEQDAYKANLRAPQAGRIRDLLRARGLTAEAAREFGIGFAAQG----------- 163

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
                                    F  R+  PI + R +++ + GR   + ++ KY N+
Sbjct: 164 ------------------------FFAGRITLPIYNHRNELVGWTGRATKEDQTAKYKNT 199

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
               LF K   +YN   A    +           +  II VEG++DV+S+ QAG++NVV+
Sbjct: 200 ESNDLFDKKTLIYNEVRAKEAAR----------EAGSIIFVEGHLDVVSMWQAGIRNVVA 249

Query: 297 SLGT-ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVLLS 354
             GT A     L+ L +    I+LC+DGD  G +A  + I +     + G    +   L 
Sbjct: 250 MQGTGAPDPLLLQRLTRNIKNIILCYDGDAGGRKATEQFIKVAGPMALEGKVNLSVATLP 309

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G DPD  IR  G       +  +   +D +          +      E+E  L+  I+ 
Sbjct: 310 EGSDPDEVIRSGG--DLYNYLANADSWLDWVIDTWASALDKSDTAMVTEVEQKLRALIDG 367

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           ++ + LR +Y       L         E     + W        +   + R  Q + +  
Sbjct: 368 LRSKALRTHYIDKAARVLTATE----KEAEKLAKEWGNREFFSSEAEWTPRTPQEARLA- 422

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                    E  LL   ++  A+  +    L  +   +  L+ L + L      
Sbjct: 423 --------AERRLLRLFVHRAALRNQLLPLLERV--YHPALRWLSARLVELQEN 466


>gi|7546338|pdb|1D0Q|A Chain A, Structure Of The Zinc-Binding Domain Of Bacillus
           Stearothermophilus Dna Primase
 gi|7546339|pdb|1D0Q|B Chain B, Structure Of The Zinc-Binding Domain Of Bacillus
           Stearothermophilus Dna Primase
          Length = 103

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 5/103 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I+ +   + I ++IG+YV   R+  N     Y+  CPFH EKTPSF  +  K  
Sbjct: 4   RIPEETIEAIRRGVDIVDVIGEYVQLKRQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD 104
           ++CF C   G+  +FL  + G  F+E+ +RLAA AGV L V +
Sbjct: 59  FHCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAKAGVDLSVYE 101


>gi|240047244|ref|YP_002960632.1| DNA primase [Mycoplasma conjunctivae HRC/581]
 gi|239984816|emb|CAT04803.1| DNA primase [Mycoplasma conjunctivae]
          Length = 590

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 129/631 (20%), Positives = 247/631 (39%), Gaps = 63/631 (9%)

Query: 8   IKDLLI----HIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
           I++L      +I I ++I QY++  ++  N     Y   CPFHD+  PS   + ++  + 
Sbjct: 3   IQELRAYIQNNIDIHSVISQYINLSKKGNN-----YLGICPFHDDSKPSLSVSTNRKIFK 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLI 121
           CF+C+  GD + FL      SF E +  L     + L       + +   +++   +  +
Sbjct: 58  CFACNQAGDVIQFLIKYHNWSFNEVINFLNTTYNLQLNTNLVLKETQIYTEVEKQALSAL 117

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             A+  +   L + +D+++  YL +R I    I+ F +G+AP           ++     
Sbjct: 118 SNASKIYFLYLYHNKDEKIKKYLQKRRISEDIIQTFNIGFAPAE-------GIKEKLYNL 170

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
               + L+     +    D F NRL F I + +G ++AF GR+L + E+ KYLNS  + L
Sbjct: 171 GFEHSLLVNYSLINNLDNDFFTNRLTFAISNEKGDIVAFSGRSL-ENENPKYLNSASSSL 229

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F K   LYN+  A                +  II+ EG+MD ++  + G+ NVV+ +GT+
Sbjct: 230 FSKSNILYNYHRAKE----------FEGPNKEIIITEGFMDTIAFYRDGIHNVVALMGTS 279

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LTE  + LL     ++ L  D DD G  A  K+I +    L        +      DPD 
Sbjct: 280 LTENHINLLKN--KQVTLVLDVDDAGNNATLKSIQI---LLKNKITTFVISWEDKMDPDE 334

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           +   YGK + +K I      +D ++    ++ + N+         ++K  +        R
Sbjct: 335 YFEKYGKQSLQKAIRNKKSALDFVYNFFLKSINKNSSQHLENFVKNIKWYLEK-SSLAAR 393

Query: 422 YYYSQAIRDRLQQ-----------LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
             + + I   L             L Q +            +  +H      + R ++S 
Sbjct: 394 EIFLKKIETDLNIPSSAFQFKDDYLKQNFFNSDDYNFDPGYELEKHYYIPPSNHRKVESK 453

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
                    P   E  +LL ++     +    +  +D ++ + + +  +  +     +Q 
Sbjct: 454 GSFNFPPVTPLFFELKILLVVLLDQKFINVLKR--SDYKFIDAKNKNYFESI-EKIHQQP 510

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               + I          +LLK + ++  D      T           +     L K+   
Sbjct: 511 EAHAKMIMDT-----REQLLKMIGKEFYDYWNLDITPVTLEE--FADWIDYANLNKKNH- 562

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                 +I  +I ++    + ++   L+  +
Sbjct: 563 ------DINNKIKRINETTDPKEQEELLLKI 587


>gi|298713213|emb|CBJ33512.1| DNA primase [Ectocarpus siliculosus]
          Length = 1265

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 109/257 (42%), Gaps = 28/257 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + +  +     I+ +IGQ+V+               CCPFH+++TPSF  +DS+G Y
Sbjct: 183 ITDETLDLIRASTSITEVIGQHVEMKPAGRG-----MVGCCPFHEDRTPSFSVDDSRGSY 237

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------------DPKIEKK 110
           +CF C   GD ++FL  + G  F E V  LA  AG+PL                   + +
Sbjct: 238 HCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKAR 297

Query: 111 EKIQTDLIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169
            + +  L  ++++A  F+   L +         ++ ERGI    +  F+LGY+P    S 
Sbjct: 298 REARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQLGYSPADLTSP 357

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYD----------RFRNRLIFPIRSSRGQVIA 219
                 +   E   +    L+   +                RFR RL+ PIR  RG VI 
Sbjct: 358 LIEYLDQEGFEMDTLVDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIG 417

Query: 220 FGGRTLSKGESVKYLNS 236
           FG R LS  ++   + S
Sbjct: 418 FGARDLSDSQAQGSVGS 434



 Score = 80.7 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 64/279 (22%), Positives = 105/279 (37%), Gaps = 29/279 (10%)

Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289
             KYLNSPET LF KGKN++    A   ++          S     +VEGY DV+ L  A
Sbjct: 492 PAKYLNSPETTLFKKGKNVFGLDLAKEAMR----------SEDTAFVVEGYFDVIKLHDA 541

Query: 290 GVQNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDL-----VLCHL 342
           G++  V  LGTA+T  QL+L  + +   R++LC DGD  G RA  +  +      +    
Sbjct: 542 GIRCAVGVLGTAITIDQLQLCARYTKSKRVILCMDGDAAGRRAVERLCESPASSGLDSLS 601

Query: 343 IPGNRVNFVLLSR---GEDPDSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTP 398
             G  V+   +      +DP  F++ +G   F  K++ +++P  D        +  F   
Sbjct: 602 EAGVSVSVATIPEDPGCKDPADFLQAHGAEEFRAKVMGKAVPWSDWYGDSILADHDFAGD 661

Query: 399 DE-RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE-------HSGYGRYW 450
                     L   ++ +     + ++       L    +    +        S   R  
Sbjct: 662 ANAFRRCTDRLTGFMSDLSIPTDQTFHVHRFAKALAGGNEAMRHQLEFDLMNMSNEKRAR 721

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           K   R R            +      ++    RE + L 
Sbjct: 722 KNALRRRSGHYTGSWNAGVNAGSAPPAQGMKKREESRLK 760


>gi|154490348|ref|ZP_02030609.1| hypothetical protein PARMER_00581 [Parabacteroides merdae ATCC
           43184]
 gi|154088959|gb|EDN88003.1| hypothetical protein PARMER_00581 [Parabacteroides merdae ATCC
           43184]
          Length = 427

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 101/388 (26%), Positives = 154/388 (39%), Gaps = 31/388 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M       + +L    I  ++  YV   R         Y   CPFH +K PS H +  K 
Sbjct: 1   MR-GDSLKERILRVATIEEVVAAYVPLQRSGAG-----YVGLCPFHADKHPSLHVHPGKQ 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           F+ CF+C   GD  +F+  + GCSF E++  LA    +            +K +TD    
Sbjct: 55  FFKCFACGEGGDLFAFVQKIEGCSFTEAMGMLAKRYSIDSREWTVDNYAGKKKRTDGKGT 114

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
               T        N         ++ +          +L  +      L+ ++ +     
Sbjct: 115 TGKRTAGSSDKTANENSDDQLSVVNSQLSIRTIGAANRLFASL-----LQPYVPEDEALR 169

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG-RTLSKGESVKYLNSPET 239
           E     G+ I        Y + R+RLIFPIR  +G ++AF   R     E  KY+NSP +
Sbjct: 170 ETYRLFGVGIAPPEVPADYRKMRSRLIFPIRDEKGGLVAFAARRRTDGEEGAKYVNSPAS 229

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            ++ K + LY    A   ++             F+ + EGY D L++  AG  N V+  G
Sbjct: 230 PVYSKSRVLYALDRAGEAIR----------ERRFVFVTEGYKDALAMHAAGFTNTVALCG 279

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC---------HLIPGNRVNF 350
            A T   LRLL   + RIVL  D D  G  +  K + ++ C                V+ 
Sbjct: 280 VAFTAGHLRLLAGYTQRIVLLLDADGAGEASMEKIVAMLSCGTDPEGERLEPACLFEVSR 339

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVES 378
           + L  GEDPDS +   G  +F + I  S
Sbjct: 340 MQLPYGEDPDSLLHGSGFVSFRRQITTS 367


>gi|139436984|ref|ZP_01771144.1| Hypothetical protein COLAER_00118 [Collinsella aerofaciens ATCC
           25986]
 gi|133776631|gb|EBA40451.1| Hypothetical protein COLAER_00118 [Collinsella aerofaciens ATCC
           25986]
          Length = 631

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 115/399 (28%), Positives = 182/399 (45%), Gaps = 17/399 (4%)

Query: 78  SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARD 137
                 SF ES++ LA  AG+ L        ++   +  +  L      F+H  L   +D
Sbjct: 1   MKRENLSFPESIRYLADRAGIEL-HDTGDRRERGTKRARIYDLCAETAQFYHTMLMRGKD 59

Query: 138 KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT 197
            R   Y   RG+       + LG+AP  R +L  HL Q GF+ +++I+A + +       
Sbjct: 60  GRPREYFASRGMGGDVCRRYCLGFAP-GRNALVSHLSQAGFTPQEMIDANVAVSRGRG-Q 117

Query: 198 SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNY 257
             DRF +R++FPI   +G  IAFGGR +      KYLN+ ET +FHK +NLY F  A  +
Sbjct: 118 LADRFYDRVMFPIFDEQGHNIAFGGR-IMGDGQPKYLNTAETSVFHKKRNLYGFNWAKEF 176

Query: 258 LQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI 317
           +           +    I+VEGY D ++  +AG++NVV++LGTALTE+ ++ L + + RI
Sbjct: 177 I----------VAQDTAIVVEGYTDCIACWEAGIKNVVATLGTALTEHHVKTLTRFAKRI 226

Query: 318 VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
           V  FDGD  G +AA +AI            +  V+L  G DP  FI  +G    +  I  
Sbjct: 227 VYMFDGDAAGQKAARRAIQ---FIEQDSMDLRCVVLPDGNDPMEFITAHGGEELQARIDA 283

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           + PL+D +++   E+    TP  RA+        I  ++D  +   Y   I D L    +
Sbjct: 284 AEPLMDFVYRSLQESSDITTPGGRAKALEDALTLIYPLRDSYMIDTYFIQIADLLGLDLE 343

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
                     R   K      ++  +    ++   +   
Sbjct: 344 TVRASSGRVFRDVAKREDAERRREQNYERQRAQAERSGS 382



 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/521 (10%), Positives = 138/521 (26%), Gaps = 35/521 (6%)

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           ++A  F+        D+ +    DE+G +            P    +    +  K  +  
Sbjct: 117 QLADRFY--------DRVMFPIFDEQGHNIAFGGRIMGDGQPKYLNTAETSVFHKKRNLY 168

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
               A   I   ++A   + + + +     +    V+A  G  L++          + I+
Sbjct: 169 GFNWAKEFIVAQDTAIVVEGYTDCIAC-WEAGIKNVVATLGTALTEHHVKTLTRFAKRIV 227

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           +    +      A   +      +        ++L +G   +  +   G + + + +  A
Sbjct: 228 YMFDGDAAGQKAARRAI---QFIEQDSMDLRCVVLPDGNDPMEFITAHGGEELQARIDAA 284

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
                           +    G    L  A   I  +    +       +    G D ++
Sbjct: 285 EPLMDFVYRSLQESSDITTPGGRAKALEDALTLIYPLRDSYMIDTYFIQIADLLGLDLET 344

Query: 362 --------FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
                   F     +   E+   ++        +R        +    A           
Sbjct: 345 VRASSGRVFRDVAKREDAERRREQNYERQRAQAERSGSAGGRASGSRDAGRGAWASGVTP 404

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +        Y     D       + + +           A              + +V 
Sbjct: 405 PVSAPVEEEPYDYVPLDAYGAAPVEVVDDLPPIDVPDGMGAVPAADGL-GAPAAAAPMVL 463

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             L +K    E  LL  L ++P + +     +  I + +   + +   + +         
Sbjct: 464 TDLERKSLAGERELLTMLTSYPDLFRTYADRICSIEWVDPRHESIAWAVLATP---PGTD 520

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P                      +  AG  SAT++             L LY     + R
Sbjct: 521 PAACMDAARSVCPE------AATLVSAGRISATSKHPTETNIVFMLDTLELY----TIKR 570

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +    + ++ Q  +  +  + A+ +    +   Q  +++  
Sbjct: 571 RMRAAQAKLRQDRSLDDEARRALTVQAAQDSQRQ-RELQKS 610


>gi|294669703|ref|ZP_06734770.1| hypothetical protein NEIELOOT_01604 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308616|gb|EFE49859.1| hypothetical protein NEIELOOT_01604 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 146

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 47/114 (41%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI DLL    I ++I + V   +   N     Y ACCPFH EKTPSF  + SK FY
Sbjct: 2   IPSDFIDDLLAKTDIVDIIDERVPLKKSGAN-----YMACCPFHKEKTPSFSVSPSKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116
           +CFSC   G  + FL    G SF ++VQ LA  AG+ +P    ++E  E     
Sbjct: 57  HCFSCGAHGSAIGFLMEQQGMSFPDAVQYLADRAGMTVPHEKGRMEAPEIRAER 110


>gi|150024919|ref|YP_001295745.1| hypothetical protein FP0829 [Flavobacterium psychrophilum JIP02/86]
 gi|149771460|emb|CAL42929.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 1185

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 113/619 (18%), Positives = 222/619 (35%), Gaps = 61/619 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             + FI+ LL    I  +IG+Y+D  R   N       A  PF D+KT S   + +K  +
Sbjct: 4   IKQSFIESLLERAHIDEVIGKYLDLKRSGANL-----KAKSPFTDDKTASLVVSPAKNIW 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--------Q 114
             FS    G+ ++F+     C++ E+++++A+     +     +  +K+K         +
Sbjct: 59  KDFSSGKGGNMVNFIMEKEPCTYPEAIEKIASFYNEVVQYEAVEFSEKKKEQLEKKEVLR 118

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             LI + E+    +                 +R  D   I  + +G+AP++    +    
Sbjct: 119 KTLIAVHELYKQEYKSI--EVEHPAHQEVEIKRDYDQETIIDWGIGFAPENFLYNKLSAS 176

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
            K     +  E GL+I         D++ NR+I+PI  + G +I   GR +S   +    
Sbjct: 177 GK---VFQGEELGLIIRQW------DKYSNRVIYPIHDANGLLIGLAGRDVSAKPNAAKW 227

Query: 235 NSPETI----LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            +P       L++K K  +    A   ++K           +   + EGY DV++  + G
Sbjct: 228 INPNVDEHNILYNKSKVWFGLHKAKFSIRKK----------NEAFITEGYNDVIAWHRYG 277

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           ++N V+S GTA+TE Q+  L KL  +IV C D D+ G+RA  K I L +           
Sbjct: 278 LENTVASCGTAITEQQINELKKLCSKIVFCMDPDESGMRAVLKQIPLFIKQ-----GFRT 332

Query: 351 VLLSRGEDPDSFIRCYG--------KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
            ++    DPD F+R Y                         +L     +   +   +   
Sbjct: 333 EVIVLDYDPDDFVRNYHDVISLSGGLEEMFNTPSIRKDGFSLLVNEYIKKDYWKLEETLE 392

Query: 403 ELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH--RDQ 459
             +  L+  ++  I +       +  I+  L              G+  ++       + 
Sbjct: 393 VEKNILETLVSQDILNANKLKAKANQIKSDLIHSTSLLKETELVSGKKSEQYKSELLTNS 452

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLT-------LINHPAILQEQYQELADIRYDN 512
              +    Q+ L K         ++  ++           +   I +    +       N
Sbjct: 453 TLKANLDKQNHLAKNIQESVELKQQRKVVAIQREKYTSAFDSAEINRANGAKKLCAEIIN 512

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            + + L+    +   ++     + I+  + E      + +      +          N+ 
Sbjct: 513 VQEKALFEIYINWIQKESGISKKAINDWIKELRSENEVDEDYDIEYELPKNVTIPFKNLE 572

Query: 573 DVRQGYQQALALYKRFRLL 591
              + Y   LA  + +  L
Sbjct: 573 KTIKHYGMFLANNQIYMAL 591


>gi|76799607|ref|ZP_00781727.1| DNA primase [Streptococcus agalactiae 18RS21]
 gi|76585042|gb|EAO61680.1| DNA primase [Streptococcus agalactiae 18RS21]
          Length = 238

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 8/211 (3%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              ++ I ++   + I ++IG+ V   +   N     +   CPFH EKTPSF+  + + F
Sbjct: 33  AIDKEKISEIKNSVNIVDVIGEVVGLTKTGRN-----HLGLCPFHKEKTPSFNVIEDRQF 87

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRL 120
           ++CF C   GD   F+      SF++SVQ LA  +G+PL      ++ KK K    L+ +
Sbjct: 88  FHCFGCGRSGDVFKFVEDYQHISFLDSVQVLAERSGIPLDTNFKGQVPKKPKANQSLLDI 147

Query: 121 IEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             VA+ F+H  L      +R   YL ERG+    I+ F++G +P  +  L   L  K F 
Sbjct: 148 HRVASGFYHAYLMTTNDGERARQYLAERGVTEDLIKHFQIGLSPGGQDFLYRRLA-KEFD 206

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPI 210
           E+ ++ +GL    +NS   YD F NR++FP+
Sbjct: 207 EKTLMSSGLXNYSENSNQFYDSFNNRIMFPV 237


>gi|194246699|ref|YP_002004338.1| DNA primase [Candidatus Phytoplasma mali]
 gi|193807056|emb|CAP18492.1| DNA primase [Candidatus Phytoplasma mali]
          Length = 606

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 115/468 (24%), Positives = 201/468 (42%), Gaps = 43/468 (9%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
           ++FI  +   +PI +L+ +  V   +   N     +   CPFH EK  SF  +  K    
Sbjct: 9   KEFINKINTEVPIYDLVQENNVILKKVGKN-----FMGLCPFHSEKNASFSVSPEKNIAV 63

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           C SC   G  +SF   +   SF  +V  LA    +   V   K          L R+IE 
Sbjct: 64  CMSCKKGGRPISFYKEIKKVSFQYAVSELAQRLNI---VDLSKKIFLSNSNNHLYRIIEE 120

Query: 124 ATDFFHHSL--KNARDKRLHYYLDERGIDSHAIEMFKLGYAPD----------------- 164
              FF  +L  +    K   Y  +ER I    I+ FKLGYA                   
Sbjct: 121 TMIFFQSNLYDRTFGKKAFKYLEEERKIKDETIKYFKLGYALSHLEENIFNNKIKNKKEF 180

Query: 165 SRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT 224
           + +S      +K FS   +I+ G++ + + +   Y+ F  RLIFPI    G+ + F GR 
Sbjct: 181 NNFSSLVDYLKKNFSINDLIDLGIIKENEKTGDYYNFFNERLIFPITDHYGKFVGFAGRN 240

Query: 225 LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284
           L+  E +KYL +  T LF+K + LY F+   + + K           + +I+ EG+ +V+
Sbjct: 241 LNNNEPIKYLFNTNTKLFNKQELLYQFYENKSEIIKK----------NQVIIYEGFFEVI 290

Query: 285 SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344
              Q G++N V+++GT L+  Q+++L +L+   +  +D D  G  +      L       
Sbjct: 291 VSFQCGIKNTVATMGTNLSIKQIKILSELTKEFIFAYDNDFAGQES---FFKLGNYLTKE 347

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           G RV  +L   G+DPD + R  G   F+K I+++      +   E   +      +  E 
Sbjct: 348 GFRVKRILFPNGQDPDEYYRQKGTIQFQKFIIDNTEDFLDIKCEELSKKINYFSLDTVEK 407

Query: 405 EIHLKNCINHI--KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
           E       +    +++K++ +Y   + ++     + +  +++   +  
Sbjct: 408 EKIKSELFSLFYKQNEKIKIHYQSILNNKYNIKIKLFFDKNNNIQKSA 455


>gi|126667775|ref|ZP_01738742.1| DNA primase [Marinobacter sp. ELB17]
 gi|126627723|gb|EAZ98353.1| DNA primase [Marinobacter sp. ELB17]
          Length = 610

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 111/451 (24%), Positives = 191/451 (42%), Gaps = 26/451 (5%)

Query: 11  LLIHIPISN-LIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69
           + I + +S  ++   ++  +R       ++   CPFHDE TPSF  ND+KG Y+C  C  
Sbjct: 11  IKIRLSLSTHVLAAGIELKKRGA-----EWVGLCPFHDENTPSFSVNDTKGLYFCRGCRA 65

Query: 70  KGDHLSFLSALLGCSFIESVQRLAAIAGVPL------PVVDPKIEKKEKI---QTDLIRL 120
            GD + F +A+   S  ++++ LA +A + +      P   P + + ++    ++ L+ +
Sbjct: 66  TGDIIEFHAAMNLVSTGQAIKELADLADIKVEPRQYTPRNGPAVRRPQRQAWDRSVLLDI 125

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A   F      A        ++ER I       F LGY P +   L   + +   S+
Sbjct: 126 NVAAQYVFR---GKAEHPDFISVIEERHIPPALAAAFGLGYFPTNLAFLDSMVARPELSD 182

Query: 181 --EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
                +  G    G         F  RLIFPI    G ++ F GRTL +    KY+NSPE
Sbjct: 183 LSRDQVSLGCAELGLTYTGGGSPFTGRLIFPITDPSGAIVGFSGRTLDEASKAKYINSPE 242

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNS---SSFIILVEGYMDVLSLCQAGVQNVV 295
           + LF K + LY        +  S        +      I +VEGY DV++L   G++   
Sbjct: 243 SELFDKSRLLYALTPPRALITASPEAREFWRTLIAQDEIYVVEGYTDVIALAAFGIR-AC 301

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           + +GT  + +Q++LL K + RI   +DGD PG +AA + +  V   +   +R+   LL  
Sbjct: 302 AGMGTGFSSHQVQLLLKHARRIRCLYDGDRPGQQAAQRTMLTVFAEMTDDHRLTAHLLPD 361

Query: 356 GEDPDSFI--RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             DPDSF+        A    +    P          +  + ++  ++  +E    N   
Sbjct: 362 THDPDSFLAANPDDPKAALSGLHVRQPESLWWDHYVGKLSTPSSLADQVVIERAYANRDT 421

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
           + K    +   ++ I+     L +    +  
Sbjct: 422 YPKTPLWQLMIARRIQQISGYLIRYPALQTQ 452


>gi|309800315|ref|ZP_07694487.1| DNA primase [Streptococcus infantis SK1302]
 gi|308116062|gb|EFO53566.1| DNA primase [Streptococcus infantis SK1302]
          Length = 209

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 7/200 (3%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  I+++  +  I  +IG+ +   +   N     +   CPFH EKTPSF+  + K FY+
Sbjct: 3   DKRLIEEIKNNTNIVEIIGEVISLQKSGRN-----FLGLCPFHGEKTPSFNVVEDKQFYH 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD   F+      +F ++V+ LA   G+ +        +      +L  + + 
Sbjct: 58  CFGCGRSGDVFKFIEEYQQVTFADAVRILAERLGIQMAAPVQSSVQPRSPHQNLYDMHDK 117

Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
           A  F+H  L      +    YL +RG+    ++ F +G AP  R  L + L    +SE  
Sbjct: 118 AARFYHAILMTTKMGEEARNYLYKRGLTDDVLKHFMIGLAPAERSYLYQRLAD-DYSEND 176

Query: 183 IIEAGLLIDGDNSATSYDRF 202
           ++++GL    +++       
Sbjct: 177 LLDSGLFYLSESNQFLIPFI 196


>gi|330686122|gb|EGG97743.1| CHC2 zinc finger domain protein [Staphylococcus epidermidis VCU121]
          Length = 181

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 10/183 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   +  I ++     I +L+ +YV  ++R  N     Y   CPFHDEKTPSF  ++ K 
Sbjct: 1   MRIEQSVINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTD 116
             +CF C   G+   F   +   SF E+V+ L     + +            +       
Sbjct: 56  ICHCFGCKKGGNVFQFTQEIKDISFTEAVKELGERVNITVDVGNNEYQNTNTQIASDDLQ 115

Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           +I + E+  +++H++L K    ++   YL ER      I+   +GYAP+S +   + L +
Sbjct: 116 MIEMHELMQEYYHYALMKTVEGEKALTYLKERDFPEQLIKERGIGYAPNSSHFCHDFLEK 175

Query: 176 KGF 178
           KG 
Sbjct: 176 KGM 178


>gi|317969503|ref|ZP_07970893.1| DNA primase [Synechococcus sp. CB0205]
          Length = 564

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 94/449 (20%), Positives = 176/449 (39%), Gaps = 61/449 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                ++ +     +++L G   +  +        ++   CP+HD++ PS   + ++   
Sbjct: 47  LTPAVLESVRERAQVTDLFGP-TELQKSGR-----EFVTRCPWHDDRRPSLSVSPTRNRV 100

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C    D + +L    G SF E+V  LA   GV +   DP+ +++ +         E
Sbjct: 101 HCFVCGKGTDAIGWLQDRQGLSFQEAVLELARRTGVSVAEGDPEAQEQFEQ-----EWRE 155

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
                    L   R ++   +  E                            ++G     
Sbjct: 156 ------RRQLMAKRSEQRAQFHLEL-----------------------VQQLEQGGDGAD 186

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
            ++A  +      A        RL+ P+  + GQ   F GR +   +  KY NS   +LF
Sbjct: 187 YLQARGISAYTARAWHLGFAGGRLVIPLNDASGQTAGFCGRAI-GNQEPKYRNSTNDLLF 245

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
            +   ++    A+  ++K              +LVEG +DV+ L QAG+ N V+ LGT++
Sbjct: 246 QRNGVVFGLDQAVEAIRK----------EGTALLVEGPLDVIQLHQAGLTNAVACLGTSV 295

Query: 303 TEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAID-LVLCHLIPGNRVNFVLLSRGEDPD 360
           +  QL+LL +     +++  DGD  G  A  K ++ L    +  G   + V L  G+D D
Sbjct: 296 SALQLQLLQRQGMKHLLVALDGDRAGQAATDKLLEQLQPQLVAGGLSASVVQLPEGQDAD 355

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETEN----RSFNTPDERAELEIHLKNCINHIK 416
             +R  G +A E L+V +   ++    R            + +    +E   +  +  + 
Sbjct: 356 GLLRSQGASAIEGLLVGAKHWLEWRLDRLLAPLTACTGEASLETLQAVERDGQALVEQLP 415

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
           D  LR    ++   RL+   ++   + SG
Sbjct: 416 DGVLR----RSAEQRLEMALRRSGEQESG 440


>gi|255522086|ref|ZP_05389323.1| DNA primase [Listeria monocytogenes FSL J1-175]
          Length = 452

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 104/447 (23%), Positives = 196/447 (43%), Gaps = 38/447 (8%)

Query: 197 TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALN 256
              DRFRNR++FPI + RGQ+IAF GR   + +  KYLNSPET +F+K + L++F  A  
Sbjct: 25  QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYLNSPETPVFNKRRILFHFSEARQ 84

Query: 257 YLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR 316
            ++K             I L+EG+MDV+S  +AGVQN V+S+GT+LTE    L+ +L+ R
Sbjct: 85  AIRKQ----------EEITLMEGFMDVISAEEAGVQNAVASMGTSLTEEHADLIKRLTNR 134

Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK-LI 375
            ++C+DGD  G+ AAYKA  L++           + L  G+DPD FIR  G   F++   
Sbjct: 135 AIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLPAGKDPDDFIRASGPEKFKEVYK 192

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            + +             R+     ++          I  +     R  Y + + D  +  
Sbjct: 193 QQRMTWTAFKIHYLRRERNLQNETDQIGYIDDCLREIAKLDQAVERELYLKQLADEFELT 252

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPS-------------QRLMQSSLVKGKLSKKPSL 482
            +    +     +  +K+ +      P                ++ S     +     + 
Sbjct: 253 IETLKQQLQQSLKNSQKSRQMASYNEPPIDDSFMGMMPQEETEMLFSFEQPTQKLSAHTT 312

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  L+  ++          Q L D  + ++  + L+++L   F E     P +    + 
Sbjct: 313 SEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYKALYTYLIGYFAEGNDADPTKFMDSVP 372

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +     L+  L+  +                 +  ++  +   KRF+ L ++K+E+E+++
Sbjct: 373 DATMKGLISSLEMVIS-----------PDEQGKTQFEDYIRSLKRFK-LEQKKKELEQEL 420

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIH 629
           A +  + + +    ++  + +++ Q++
Sbjct: 421 ATLNRENDKDNEIRVMLEIVQLNRQLN 447


>gi|269214559|ref|ZP_06158650.1| DNA primase [Neisseria lactamica ATCC 23970]
 gi|269209458|gb|EEZ75913.1| DNA primase [Neisseria lactamica ATCC 23970]
          Length = 131

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 5/109 (4%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL    I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P V  + +  E
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPE 105


>gi|313637826|gb|EFS03164.1| DNA primase [Listeria seeligeri FSL S4-171]
          Length = 454

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 104/447 (23%), Positives = 195/447 (43%), Gaps = 38/447 (8%)

Query: 197 TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALN 256
              DRFRNR++FPI + RGQ+IAF GR   + +  KYLNSPET +F+K + L++F  A  
Sbjct: 27  QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYLNSPETPIFNKRRTLFHFSEARQ 86

Query: 257 YLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR 316
            ++K             I L+EG+MDV+S  +AGVQN V+S+GT+LTE    L+ +L+ R
Sbjct: 87  AIRKQ----------EEITLMEGFMDVISAEEAGVQNAVASMGTSLTEEHADLIKRLTSR 136

Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376
            ++C+DGD  G+ AA+KA  L++           + L  G+DPD FIR  G   F+++  
Sbjct: 137 AIICYDGDRAGIEAAFKAGTLLVERNRLDV--FVLQLPAGKDPDDFIRASGADKFKEIYK 194

Query: 377 -ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            + +             R+     ++          I  +     R  Y + + +  +  
Sbjct: 195 QQRMTWTAFKIHYLRRERNLQNETDQIGYIDDCLREIAKLDQAVERELYLKQLAEEFELT 254

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPS-------------QRLMQSSLVKGKLSKKPSL 482
            +    +     +  +K  +      P                ++ S     +     + 
Sbjct: 255 IETLKQQLQQSIKINQKARQTASYNEPPIDDSLMGLMPQEDTEMLYSFKQPTQKLSAHTT 314

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  L+  ++          Q L + ++ ++  Q L+++L   F E     P +    + 
Sbjct: 315 AEQQLMKAMMESRDSFLLIKQLLGETQFYHDNYQALYTYLIGYFAEGNEADPNKFMDSVG 374

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +     L+  L+  +                 R  ++  +   KRF+ L ++K+E+E+++
Sbjct: 375 DAAMKGLISSLEMVIS-----------PEEQGRIQFEDYIRSLKRFK-LEQKKKELEQEL 422

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIH 629
           A      + E    ++  + +++ Q++
Sbjct: 423 AGYNRDNDKENEIRVMLEIVQLNRQLN 449


>gi|284799938|ref|ZP_06390438.1| DNA primase [Neisseria subflava NJ9703]
 gi|284796406|gb|EFC51753.1| DNA primase [Neisseria subflava NJ9703]
          Length = 131

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 63/120 (52%), Gaps = 10/120 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            P DFI +LL  + I ++I + V   +   N     Y ACCPFH EKTPSF  + +K FY
Sbjct: 2   IPSDFIDELLSKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-----VVDPKIEKKEKIQTDL 117
           +CFSC   G  + F+    G SF E+VQ LA   G+ +P       +P+I  + K    L
Sbjct: 57  HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMTVPKVRGQEDNPEIRAERKKSNKL 116


>gi|47093462|ref|ZP_00231225.1| DNA primase [Listeria monocytogenes str. 4b H7858]
 gi|47018138|gb|EAL08908.1| DNA primase [Listeria monocytogenes str. 4b H7858]
          Length = 123

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P + I  +     I ++IG YV   ++  N     Y   CPFH EKTPSF  +  K  
Sbjct: 3   RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQM 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE 108
           ++CF C   G+  SFL    G +F+ESV+++A ++ + + +  P+  
Sbjct: 58  FHCFGCGKGGNVFSFLMEHDGLNFVESVKKVADMSHLDVAIKLPEER 104


>gi|13358057|ref|NP_078331.1| DNA primase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762415|ref|YP_001752578.1| DNA primase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|9910828|sp|Q9PPZ6|PRIM_UREPA RecName: Full=DNA primase
 gi|11356843|pir||E82884 DNA primase UU494 [imported] - Ureaplasma urealyticum
 gi|6899492|gb|AAF30906.1|AE002147_7 DNA primase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827992|gb|ACA33254.1| DNA primase [Ureaplasma parvum serovar 3 str. ATCC 27815]
          Length = 641

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 113/502 (22%), Positives = 221/502 (44%), Gaps = 39/502 (7%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +   I IS++I  Y+   ++  N     YWA CPFH++   S   ND K  + CF+C+  
Sbjct: 12  IRNAINISDVIQNYIKVIKKGNN-----YWAICPFHNDTNESLSINDKKQIFKCFACNHA 66

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRLIEVATDFF 128
           GD + F++     S+  + Q +  +  + L +++   +   +E  +  +  L +    +F
Sbjct: 67  GDVIKFVAEYKKISYALAAQEIVQLMNLDLNLLNHLQKISPQEIKKNKVFDLNKQIQKWF 126

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS---------RYSLREHLRQKGFS 179
            + L N  +  +  YL +R ++ + +  FK+GYAP++          Y+       +   
Sbjct: 127 INFLNNKNNIHVIDYLTKRNLNKNDLAYFKIGYAPNNDELLNLIKSNYNNLIQENDEFEL 186

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + I  + L+ID + +   +D F +R+IF I      V+ F GR ++  ++ KYLN+  T
Sbjct: 187 NKLIENSFLVIDKNGN--YHDFFNDRIIFSIYDHLNNVVGFSGRIITNEKTPKYLNTKTT 244

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K + LYNF              +   ++  + +VEG+MDV+++ ++   NVV+++G
Sbjct: 245 AVFKKDEVLYNFH-----------NVITIENNHQLFIVEGFMDVITIHKSNKPNVVATMG 293

Query: 300 TALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
             LT   L L+     + ++LCFD D  G  A  K I + L +      +     +  +D
Sbjct: 294 VELTNKHLELIKSYGIKDLILCFDNDQAGFLATKKQI-MKLINSPFNIFIVNHKDNDCKD 352

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            D +   +G +A  KL+ +    +      E  N + +TP  +   +      I    D 
Sbjct: 353 MDEYANKHGYSATSKLLDQ-QLHISEFLLLEISNTNKSTPSLKHSYKQECFTIIKKYGDI 411

Query: 419 KLRYYYSQAIRD-------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
                Y   ++         L+++ ++ +          KKN +   ++      + +S 
Sbjct: 412 FYVDKYVDFMKQTFSIEENLLKKVIEELLINKQCNSIQNKKNIQSYQKQTQLTNKLTTSN 471

Query: 472 VKGKLSKKPSLREAALLLTLIN 493
            K  L+K        +++ L+N
Sbjct: 472 PKVILTKIDKHFNHLVVIILMN 493


>gi|183508588|ref|ZP_02958101.1| DNA primase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|182676042|gb|EDT87947.1| DNA primase [Ureaplasma parvum serovar 14 str. ATCC 33697]
          Length = 639

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 112/502 (22%), Positives = 220/502 (43%), Gaps = 39/502 (7%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +   + IS++I  Y+   ++  N     YWA CPFH++   S   ND K  + CF+C+  
Sbjct: 12  IRNAVNISDVIQNYIKVIKKGNN-----YWAICPFHNDTNESLSINDKKQIFKCFACNHA 66

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRLIEVATDFF 128
           GD + F++     S+  + Q +  +  + L +++   +   +E  +  +  L +    +F
Sbjct: 67  GDVIKFVAEYKKISYTLAAQEIVQLMNLDLNLLNHLQKISPQEIKKNKVFDLNKQIQKWF 126

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS---------RYSLREHLRQKGFS 179
            + L N  +  +  YL +R ++ + +  FK+GYAP++          Y+       +   
Sbjct: 127 INFLNNKNNIHVIDYLTKRNLNKNDLAYFKIGYAPNNDELLNLIKSNYNNLIQENDEFEL 186

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + I  + L+ID + +   +D F +R+IF I      V+ F GR ++  ++ KYLN+  T
Sbjct: 187 NKLIENSFLVIDKNGN--YHDFFNDRIIFSIYDHLNNVVGFSGRIITNEKTPKYLNTKTT 244

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K + LYNF              +   ++  + +VEG+MDV+++ ++   NVV+++G
Sbjct: 245 SVFKKDEVLYNFH-----------NVITIENNHQLFIVEGFMDVITIHKSNKPNVVATMG 293

Query: 300 TALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
             LT   L L+     + ++LCFD D  G  A  K I + L +      +     +  +D
Sbjct: 294 VELTNKHLELIKSYGIKDLILCFDNDQAGFLATKKQI-MKLINSPFNIFIVNHKDNDCKD 352

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            D +   +G  A  KL+ +    +      E  N + +TP  +   +      I    D 
Sbjct: 353 MDEYANKHGYNATSKLLDQ-QLHISEFLLLEISNTNKSTPSLKHSYKQECFTIIKKYGDI 411

Query: 419 KLRYYYSQAIRD-------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
                Y   ++         L+++ ++ +          KKN +   ++      + +S 
Sbjct: 412 FYVDKYVNFMKQTFSIEENLLKKVIEELLINKQCNSIQNKKNIQSYQKQTQLTNKLTTSN 471

Query: 472 VKGKLSKKPSLREAALLLTLIN 493
            K  L+K        +++ L+N
Sbjct: 472 PKVILTKIDKHFNHLVVIMLMN 493


>gi|171920175|ref|ZP_02690565.2| DNA primase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|171902551|gb|EDT48840.1| DNA primase [Ureaplasma parvum serovar 1 str. ATCC 27813]
          Length = 641

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 113/502 (22%), Positives = 221/502 (44%), Gaps = 39/502 (7%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +   I IS++I  Y+   ++  N     YWA CPFH++   S   ND K  + CF+C+  
Sbjct: 12  IRNAINISDVIQNYIKVIKKGNN-----YWAICPFHNDTNESLSINDKKQIFKCFACNHA 66

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRLIEVATDFF 128
           GD + F++     S+  + Q +  +  + L +++   +   +E  +  +  L +    +F
Sbjct: 67  GDVIKFVAEYKKISYTLAAQEIVQLMNLDLNLLNHLQKISPQEIKKNKVFDLNKQIQKWF 126

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS---------RYSLREHLRQKGFS 179
            + L N  +  +  YL +R ++ + +  FK+GYAP++          Y+       +   
Sbjct: 127 INFLNNKNNIHVIDYLTKRNLNKNDLAYFKIGYAPNNDELLNLIKSNYNNLIQENDEFEL 186

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + I  + L+ID + +   +D F +R+IF I      V+ F GR ++  ++ KYLN+  T
Sbjct: 187 NKLIENSFLVIDKNGN--YHDFFNDRIIFSIYDHLNNVVGFSGRIITNEKTPKYLNTKTT 244

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K + LYNF              +   ++  + +VEG+MDV+++ ++   NVV+++G
Sbjct: 245 SVFKKDEVLYNFH-----------NVITIENNHQLFIVEGFMDVITIHKSNKPNVVATMG 293

Query: 300 TALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
             LT   L L+     + ++LCFD D  G  A  K I + L +      +     +  +D
Sbjct: 294 VELTNKHLELIKSYGIKDLILCFDNDQAGFLATKKQI-MKLINSPFNIFIVDHKDNDCKD 352

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            D +   +G +A  KL+ +    +      E  N + +TP  +   +      I    D 
Sbjct: 353 MDEYANKHGYSATSKLLDQ-QLHISEFLLLEISNANKSTPSLKHSYKQECFTIIKKYGDI 411

Query: 419 KLRYYYSQAIRD-------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
                Y   ++         L+++ ++ +          KKN +   ++      + +S 
Sbjct: 412 FYIDKYVDFMKQTFSIEENLLKKIIEELLINKQCNSIQNKKNIQSYQKQTQVTNKLTTSN 471

Query: 472 VKGKLSKKPSLREAALLLTLIN 493
            K  L+K        +++ L+N
Sbjct: 472 PKVILTKIDKHFNHLVVIMLMN 493


>gi|256004391|ref|ZP_05429372.1| DNA primase catalytic core domain protein [Clostridium thermocellum
           DSM 2360]
 gi|255991675|gb|EEU01776.1| DNA primase catalytic core domain protein [Clostridium thermocellum
           DSM 2360]
          Length = 459

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 135/471 (28%), Positives = 214/471 (45%), Gaps = 33/471 (7%)

Query: 144 LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR 203
           + +R +       F LGY+P+   +L  HLR+KG+ +E ++++GL I    +   YDRFR
Sbjct: 1   MTKRKVSGSIARKFGLGYSPEEWDALYNHLRKKGYDDEILLDSGL-ILKGKNGGYYDRFR 59

Query: 204 NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIR 263
            R+IFPI   RG VI FGGR L    + KY+NSPET++++K KNLY    A N  QK   
Sbjct: 60  GRIIFPIFDLRGNVIGFGGRVL-DNSTPKYMNSPETLVYNKRKNLYGLNFAKNSGQK--- 115

Query: 264 KDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDG 323
                     II+VEGYMDV+SL Q G+ N V+SLGTALTE Q R+L K +  I++ +D 
Sbjct: 116 ---------RIIVVEGYMDVISLFQFGIINTVASLGTALTESQGRILKKYAEEIIISYDA 166

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D  G+ A  + +DL       G  V  +++  G+DPD F++  G  AF KL+  +L LV+
Sbjct: 167 DTAGMAATMRGLDL---LNDIGCNVKVLIIPEGKDPDEFVKKNGPEAFNKLVENALSLVE 223

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              K        NT + +        + ++ I +   R  Y + I        +    E 
Sbjct: 224 YKIKALKSTIDTNTTEGKINFLNKAADLLSKIDNNMEREMYIKKISKEYDISQESIYAEI 283

Query: 444 SGYGRY---WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
               +    +K   R    K  + RL      K     K    E  LL  L    ++ + 
Sbjct: 284 LKRIKPKTVYKPLTRTLTAKNDNNRLKIEKNGKKSSYDKIIECERMLLCLLSIDNSLYKV 343

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              ++    + + + +++   +F  F E+K  +P E+   L       +  +L +     
Sbjct: 344 VKDKIIVDEFKDEQNKEIAKIVFKRFEEKKGIVPAELIN-LAGEETSGVFARLIQ----- 397

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
                  E N  D  +     +        L  +++EI +Q++      E 
Sbjct: 398 ------GECNFDDNIKAVMDIIK-KMELYRLEDRQKEILQQLSSGNLSTED 441


>gi|186701806|ref|ZP_02971480.1| DNA primase [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|186701090|gb|EDU19372.1| DNA primase [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 641

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 111/502 (22%), Positives = 220/502 (43%), Gaps = 39/502 (7%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +   + IS++I  Y+   ++  N     YWA CPFH++   S   ND K  + CF+C+  
Sbjct: 12  IRNAVNISDVIQNYIKVIKKGNN-----YWAICPFHNDTNESLSINDKKQIFKCFACNHA 66

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRLIEVATDFF 128
           GD + F++     S+  + Q +  +  + L +++   +   +E  +  +  L +    +F
Sbjct: 67  GDVIKFVAEYKKISYALAAQEIVQLMNLDLNLLNHLQKISPQEIKKNKVFDLNKQIQKWF 126

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS---------RYSLREHLRQKGFS 179
            + L N  +  +  YL +R ++ + +  FK+GYAP++          Y+       +   
Sbjct: 127 INFLNNKNNIHVIDYLTKRNLNKNDLAYFKIGYAPNNDELLNLIKSNYNNLIQENDEFEL 186

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + I  + L+ID + +   +D F +R+IF I      V+ F GR ++  ++ KYLN+  T
Sbjct: 187 NKLIENSFLVIDKNGN--YHDFFNDRIIFSIYDHLNNVVGFSGRIIASEKTPKYLNTKTT 244

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K + LYNF              +   ++  + +VEG+MDV+++ ++   NVV+++G
Sbjct: 245 SVFKKDEVLYNFH-----------NVITIENNHQLFIVEGFMDVITIHKSNKPNVVATMG 293

Query: 300 TALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
             LT   L L+     + ++LCFD D  G  A  K + + L +      +     +  +D
Sbjct: 294 VELTNKHLELIKSYGIKDLILCFDNDQAGFLATKKQV-MKLINSPFNIFIVDHKDNDCKD 352

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            D +   +G +A  KL+ +    +      E  N + +TP  +   +      I    D 
Sbjct: 353 MDEYANKHGYSATSKLLDQ-QLHISEFLLLEISNTNKSTPSLKHSYKQECFTIIKKYGDI 411

Query: 419 KLRYYYSQAIRD-------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
                Y   ++         L+++ ++ +          KKN +   ++        +S 
Sbjct: 412 FYIDKYVNFMKQTFSIEENLLKKVIEELLINKQCNSIENKKNIQSYQKQTQITNKFTTSN 471

Query: 472 VKGKLSKKPSLREAALLLTLIN 493
            K  L+K        +++ L+N
Sbjct: 472 PKVILTKIDKHFNHLVVIMLMN 493


>gi|57506089|ref|ZP_00372011.1| DNA primase, putative [Campylobacter upsaliensis RM3195]
 gi|57015573|gb|EAL52365.1| DNA primase, putative [Campylobacter upsaliensis RM3195]
          Length = 510

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 112/552 (20%), Positives = 213/552 (38%), Gaps = 50/552 (9%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           +++    I I  +I  Y+   +         Y   CPFH EKT SF  N ++G+++CF C
Sbjct: 3   LQEFKSRIDIVRIIENYLILRKEGA-----FYKGNCPFHAEKTASFVINVNRGYWHCFGC 57

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
              GD + FL      SF E+   +A +  + L     +       + +   L E+   F
Sbjct: 58  GKGGDAIKFLQIYKNLSFSEAAAEVAKLENIELSFNSTQ-------KEEFAFLNELGAYF 110

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
                KN  ++    +  +RG+D   +  F+LGY  D    +R    +   +    +   
Sbjct: 111 -----KNNFNEECLAFCKKRGLDESDVGEFELGYTGDLENLVRFLKAKNYIN----LAKK 161

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPETILFHKGK 246
           L    +N    Y  F  RL F I+ S G+V  F  R L   G+  KY+NS  + LF+K  
Sbjct: 162 LGYIKENQNGFYSLFVGRLSFVIKDSFGRVRGFSTRELKAGGKLGKYVNSLNSELFNKSF 221

Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306
            LY+F  A +Y + S +          + + EG+ D ++L +AG ++ V+S GTA T+  
Sbjct: 222 LLYHFDKAKDYARLSKK----------LYICEGFFDAIALQKAGFKSAVASSGTAFTQSH 271

Query: 307 ---LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
              ++ L   +  +V   D D  G  A  KA+ L   +     +V  V   + +D   F+
Sbjct: 272 LSLIKRLNVENLELVFVPDKDKAGYEAVIKALWLCFENEFFNCKV-AVCKEKVKDVGEFM 330

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + Y     + L + +   ++          +    +               I  + +  +
Sbjct: 331 QKY---DIKNLALHTYEGLEFYI-----KFAMQKAENCEAKHALFLKLKKMI--EGVSNF 380

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +   +  ++       +   + +  K      + +    ++++S+L   +  ++    
Sbjct: 381 YLKN--ELYEKAALYLGVDKKEFLKAKKAFKESGENQRQMMQIIKSALNDAEFKERLIYY 438

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNE--LQKLWSFLFSDFVEQKYFLPEEIHQRL 541
               L          + +      +     E   + L +F+ S   +QK    E +  + 
Sbjct: 439 AGEFLDRAFFDDEGKKRELLADESVEIYTKERQNEALKAFVLSHLYKQKESTKEPLRLKE 498

Query: 542 CERGFGELLKQL 553
                 EL  ++
Sbjct: 499 LASKIAELKSEV 510


>gi|50122314|ref|YP_051481.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043]
 gi|49612840|emb|CAG76290.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043]
          Length = 968

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 86/393 (21%), Positives = 151/393 (38%), Gaps = 45/393 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLI---GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
             P   ++ L   + +  ++   G+ V   +R       D+   CPFH E TPS   +  
Sbjct: 3   RIPESELQHLKAAVSLVEVVRGQGRTVV--KRGK-----DWVVLCPFHQENTPSMVISPD 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----KIEKKEKIQ 114
           K  Y+CF C   G  + ++    G S   +V +L    G  +P  +P         E+ +
Sbjct: 56  KNLYHCFGCDAGGSVIDWVMKTEGLSLPHAVDKLRRELG-SVPAAEPLPPVADIADEQER 114

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L   +   T+F+HH+L NA  + + Y    R      +  F+LG+A     +L   L 
Sbjct: 115 QAL---LHRVTEFYHHTLLNAP-EAIAYLEKRRLNHPELVAQFRLGFA---NRTLGYRLP 167

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
            K   +   I A L   G    + ++     L+ P+  S GQV    GR L         
Sbjct: 168 SKKLKDGAAIRAQLQAIGVMRDSGHEHLAGSLVVPVIDSHGQVRELYGRKLCDKLRAGT- 226

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
                      K+LY     L      +  +    +S  +IL E  +D +S   AG +NV
Sbjct: 227 ----------PKHLY-----LPGPHGGVWNEQALVASKSVILCESLIDAMSFWVAGYRNV 271

Query: 295 VSSLGTALTEYQLR--LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            ++ G      ++R   +     ++++ FD D  G   A   + L       G     V+
Sbjct: 272 TAAYGVNGFTDEMRQAFIRHSVKQVLIAFDNDTAGDDGA---VKLASALAADGITPFRVV 328

Query: 353 LSRGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383
              G D + ++      + AF  ++  ++ + +
Sbjct: 329 FPAGMDANEYLCKVSEPEVAFRAVVEGAMAMGE 361


>gi|307069579|ref|YP_003878056.1| DNA primase [Candidatus Zinderia insecticola CARI]
 gi|306482839|gb|ADM89710.1| DNA primase [Candidatus Zinderia insecticola CARI]
          Length = 543

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 204/497 (41%), Gaps = 62/497 (12%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           + +IK +     I N+I +YV   +   N     Y+  CPFH EKTPSF  N  K ++YC
Sbjct: 3   KKYIKLINKKYNILNIIKKYVFLKKIGNN-----YFGLCPFHKEKTPSFCVNLFKKYFYC 57

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C+  GD +SFL       FI  +  L                KK   +  +  + E  
Sbjct: 58  FGCNFGGDMISFLMKYKKEKFINIINILLKK---------NIFFKKNSDEEKIFLIYEKI 108

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
              +   LK     + +  L                                        
Sbjct: 109 NLIYKKELKKNYKAKKYIKLRNINKKIIKKFNLGYSKN------------------INKK 150

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
              +    +    + +  +NR+IFPIR+  G++IAFGGR+++     KY+N+ E  +F K
Sbjct: 151 FKFIKKKYNFIYKNINILKNRIIFPIRNLNGKIIAFGGRSINNNYKNKYINTYENFIFKK 210

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            K  Y  +  L +++K            ++I+VEGY+D+L+L Q G  N +S LGT  T+
Sbjct: 211 KKEFYGLYENLKHIKKK----------KYVIIVEGYIDLLTLFQFGFLNTISILGTNFTK 260

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
           Y  + + K++ +I+  FDGD  G  A  K ++L L   +    ++FV+L    DPD+++R
Sbjct: 261 YHFKKITKITNKIIFIFDGDIAGNLAINKVLNLCLSLSLKNKIISFVILPYKYDPDNYLR 320

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
            YG   F+K I  S+ L ++L  +   N +  T   R  +  + KN +N+I +  +    
Sbjct: 321 KYGILKFKKKIENSISLFNLLINKIINNNNIRTLQGRINILYNFKNIVNNINEDFIILQI 380

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              I   L       I         ++K   +  +                       +E
Sbjct: 381 INLISKILNIKINYIIKFILKKKINYEKRKVYYVKN--------------------INKE 420

Query: 485 AALLLTLINHPAILQEQ 501
             LL  +I  P ++++ 
Sbjct: 421 IILLYNIIKFPFLIKKI 437


>gi|165761277|pdb|3B39|A Chain A, Structure Of The Dnag Primase Catalytic Domain Bound To
           Ssdna
 gi|165761278|pdb|3B39|B Chain B, Structure Of The Dnag Primase Catalytic Domain Bound To
           Ssdna
          Length = 322

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 111/330 (33%), Positives = 181/330 (54%), Gaps = 12/330 (3%)

Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172
            +  L +L++    F+  SL+         YL++RG+    I  F +G+AP    ++ + 
Sbjct: 5   QRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKR 64

Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
                 + + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ K
Sbjct: 65  FGGNPENRQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPK 122

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPET +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+ 
Sbjct: 123 YLNSPETDIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGIN 172

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
             V+SLGT+ T   ++LL++ +  ++ C+DGD  G  AA+ A++  L ++  G ++ F+ 
Sbjct: 173 YAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWCALETALPYMTDGRQLRFMF 232

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  GEDPD+ +R  GK AFE  + +++PL   L+         +TPD RA L       I
Sbjct: 233 LPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLI 292

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
           + +  + LR Y  Q + ++L  L    +  
Sbjct: 293 SQVPGETLRIYLRQELGNKLGILDDSQLER 322


>gi|330898881|gb|EGH30300.1| DNA primase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 528

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 139/543 (25%), Positives = 232/543 (42%), Gaps = 69/543 (12%)

Query: 126 DFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
           DF   +LK+    K    YL  RG+       F LG+AP    +L +HL      ++ +I
Sbjct: 2   DFHSQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQQKVMI 61

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
           +AGLLI+   +   YDRFR+R++FPIR SRG+VIAFGGR L   +  KYLNSPET +FHK
Sbjct: 62  DAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPETPVFHK 120

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
           G+ LY  F A  + +          +   II+VEGYMDV++L Q G++N V++LGTA +E
Sbjct: 121 GQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSE 170

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             L+ L+++ P ++ CFDGD  G  AA++A++  L +L  G R  F+ L  GEDPD+ +R
Sbjct: 171 EHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDPDTLVR 230

Query: 365 CYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
             G  AF+  +   + PL D  +++ T+     + + +A +       I+ +    LR  
Sbjct: 231 SEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGANLRIL 290

Query: 424 YSQAIRDRLQQLFQKYIT------------------------------------EHSGYG 447
             Q + +      +                                        +     
Sbjct: 291 MRQRLTEITGLTGEAVSQLVQSAPAEAPPSYDPYVDYDAMPDFADYQPQGGYEPQQEWTQ 350

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQEQYQE 504
           +      + +       +  +    + +  + P   E    A L TL++HP + ++  + 
Sbjct: 351 KKTGGPNQKKWDNKSWGKKGKRQDFEPRTPRVPPAVEPPMQAALRTLLHHPELAEKV-EN 409

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
            +    ++    +L   L     +       ++  R      G LL+ L  +      W 
Sbjct: 410 ASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-----WL 464

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
              +            +L+  +R R L     +  +           E +A     L E+
Sbjct: 465 IEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKIQLREL 513

Query: 625 HIQ 627
             +
Sbjct: 514 LNR 516


>gi|302518879|ref|ZP_07271221.1| DNA primase [Streptomyces sp. SPB78]
 gi|302427774|gb|EFK99589.1| DNA primase [Streptomyces sp. SPB78]
          Length = 490

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 103/513 (20%), Positives = 196/513 (38%), Gaps = 48/513 (9%)

Query: 148 GIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLI 207
           G D  A   F +GY+P     L  +LR +GF++ ++I +GL           DRFR RL+
Sbjct: 1   GFDQSAAAHFGVGYSPAGWDHLTRYLRGQGFTDRELITSGL-SQESRGGRPIDRFRGRLM 59

Query: 208 FPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDV 266
           +PI+   G ++ FG R L + ++  KYLN+PET ++ K + LY    A   + ++ R   
Sbjct: 60  WPIKDIGGDIVGFGARRLREDDNGPKYLNTPETPVYRKSQVLYGIDLAKKDIARASRA-- 117

Query: 267 RRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP-----RIVLCF 321
                   ++VEGY DV++   +GV   V++ GTA     +++L +L       R++  F
Sbjct: 118 --------VVVEGYTDVMACHLSGVTTAVATCGTAFGTEHIKILRRLLMDNGSARVIFTF 169

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           DGD  G +AA +A +               +     DP       G+ A  +L+   +PL
Sbjct: 170 DGDAAGQKAALRAFEDDQKFAAE---TYIAIAPDNMDPCDLRLAKGEQAVAELVEPRVPL 226

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ------QL 435
            +   ++        TP  RA         +  +K+  LR+  +  +   L       Q 
Sbjct: 227 FEFALRQIVSRYDLETPAGRAAALDEAAPVVASVKNVALRHAVAVQLAGMLGYGPMDQQE 286

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR------EAALLL 489
             + +   + + R  +        +  +     +    G       LR      E  LL 
Sbjct: 287 VVRRVATVARWAREHRGEPLPGGPRRAATATSGAPQRPGNSGPALILRNPAHMTERELLK 346

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
             +  P ++   +       +       +   +      ++                   
Sbjct: 347 LALQRPELVSPAFDAYEIDEFTAEPYAAVRQAIADAGGAEEGVHDAM-----------AY 395

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-----RLLSRQKEEIEKQIAQ 604
           L  +     D  + +  TE  +  +R+     +   ++      R + R+  E++    +
Sbjct: 396 LTAVREAAPDDRVRAMVTELAVEPIRRRVVDEIYASEQLVRVRVRAVQRRVTELQGTFTR 455

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           V+A+G+  + A + S L  +      ++ Q A 
Sbjct: 456 VSAQGDQARAAEVQSELWVLEQYGRALQQQGAA 488


>gi|163791804|ref|ZP_02186178.1| DNA primase [Carnobacterium sp. AT7]
 gi|159872926|gb|EDP67056.1| DNA primase [Carnobacterium sp. AT7]
          Length = 141

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 10/140 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P + +  +     I +++ QYV   ++  N      +  CPFH+E+TPSF   + K 
Sbjct: 3   MMIPEETVNKIRQETNIVDVVSQYVQLKKKGKNL-----FGFCPFHEERTPSFSVTEEKQ 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQT 115
            ++CFSC   G+  +FL  + G SF E+V + A ++   L        D K +  +  + 
Sbjct: 58  IFHCFSCGRGGNVFTFLMEVDGLSFPEAVIKTADLSQFQLDESLVQDHDHKNQPTDSTKE 117

Query: 116 DLIRLIEVATDFFHHSLKNA 135
            LIR+ E + + FHH L N 
Sbjct: 118 KLIRVHEESAELFHHILLNT 137


>gi|7767196|pdb|1DD9|A Chain A, Structure Of The Dnag Catalytic Core
 gi|7767197|pdb|1DDE|A Chain A, Structure Of The Dnag Catalytic Core
          Length = 338

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 111/331 (33%), Positives = 182/331 (54%), Gaps = 12/331 (3%)

Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172
            +  L +L++    F+  SL+         YL++RG+    I  F +G+AP    ++ + 
Sbjct: 17  QRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKR 76

Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
                 + + +I+AG+L+  ++   SYDRFR R++FPIR  RG+VI FGGR L   ++ K
Sbjct: 77  FGGNPENRQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPK 134

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPET +FHKG+ LY  + A     +  R          +++VEGYMDV++L Q G+ 
Sbjct: 135 YLNSPETDIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGIN 184

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
             V+SLGT+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ 
Sbjct: 185 YAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMF 244

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  GEDPD+ +R  GK AFE  + +++PL   L+         +TPD RA L       I
Sbjct: 245 LPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLI 304

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
           + +  + LR Y  Q + ++L  L    +   
Sbjct: 305 SQVPGETLRIYLRQELGNKLGILDDSQLERL 335


>gi|216906077|ref|YP_002333627.1| primase [Abalone shriveling syndrome-associated virus]
 gi|216263170|gb|ACJ71994.1| primase [Abalone shriveling syndrome-associated virus]
          Length = 542

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 104/422 (24%), Positives = 182/422 (43%), Gaps = 40/422 (9%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69
           ++   + IS+++G +V    R      G  +  CPFH+EKTPSF  +D  G +YCF C+ 
Sbjct: 6   EIKQKVKISDVVGGHVRLTER-----SGRLFGLCPFHEEKTPSFIVSDELGKFYCFGCNA 60

Query: 70  KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129
            GD   FLS LLG S  E+++ LA   G           K +       ++     + F 
Sbjct: 61  HGDVFDFLSKLLGISDHEALEYLAKDTG------TIIDSKPDTKTMFFAKV----AEIFM 110

Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL 189
            SL +        YL +RG+D  AI+++ +G+            + K F++    EA   
Sbjct: 111 VSLLDNV--EALNYLKKRGVDQTAIKLWSIGF--------FSLEKLKEFTDNLTSEARES 160

Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILFHKGKNL 248
                  T+ ++  NR+IFPI    G +IAF GR L    ++ KY+N+  T  F KG   
Sbjct: 161 FSDFVQLTALNQLANRIIFPIHDKTGAIIAFSGRNLDIETQTPKYINTKNTESFKKGSCF 220

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           Y        L+K             I +VEG+ DV+ +   G++  ++++GTA+T+  +R
Sbjct: 221 YGLHRCKQTLKK-----------DSIYVVEGFFDVILMDTLGLK-AIATMGTAITDDHVR 268

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
           +L     + V  FDGD  G  A +K     +          + +    E+  + +    +
Sbjct: 269 ILEDRQQKFVFLFDGDSAGQSAIFKLFSKRMIVKYSLFSCYWAVPLSEEEDAASLALQDQ 328

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
             F  ++ + L + + ++           P     +   L++ ++ I  + +R    +  
Sbjct: 329 AKFRDILAQPLDMYEFIYNYVYGTELPENPTRTDHM--RLESMLSLIAQKIVRNSMRERF 386

Query: 429 RD 430
            D
Sbjct: 387 ID 388


>gi|270614375|ref|ZP_06221721.1| DNA primase [Haemophilus influenzae HK1212]
 gi|270317997|gb|EFA29284.1| DNA primase [Haemophilus influenzae HK1212]
          Length = 111

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 5/102 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + PR FI DLL    I ++I   V   +        DY ACCPFH EKTPSF  +  K F
Sbjct: 4   SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV 103
           Y+CF C   G+ +SFL       FIE+++ LAA+AG+ +P  
Sbjct: 59  YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYE 100


>gi|27497172|gb|AAN64202.1| DnaG primase-like [Photorhabdus luminescens]
          Length = 925

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 152/391 (38%), Gaps = 37/391 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P   ++ L   + +  ++ Q      +R       DY   CPFH EKTPS   + +K 
Sbjct: 3   RIPEAELQHLKAAVSLVAVVEQQGRQLFKRGK-----DYVLLCPFHQEKTPSMVISPAKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVVDPKIEKKEKIQTD 116
            Y+CF C   G  L ++    G S   +V+RL    G    +   V   +     + +  
Sbjct: 58  LYHCFGCDAGGSVLDWVMKTEGLSLRHAVERLRGELGENPAIAPLVQPNEPAVLAEDEAG 117

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
              L+    +F+H +L NA  + L Y    R      +  FK G A  +        + K
Sbjct: 118 RQALLNRVVEFYHQTLLNAP-EALAYLEKRRLNHPELVACFKPGLANRTLGYRLPASKYK 176

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
             S    I   L+  G      ++ FR  L+ P+    GQ+    GR + +       N+
Sbjct: 177 AGS---AIRTRLMAAGILRDNGHEHFRGSLVIPVIDRHGQIREIYGRKIGEDLR---KNT 230

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P        ++LY     L      +  +    +S+ +IL E  +D +S   AG +NV +
Sbjct: 231 P--------RHLY-----LPGAHGGVWNEPAMAASASLILCESLIDAMSFWVAGYRNVTA 277

Query: 297 SLG-TALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           + G    T    + L +   R +++ FD D  G  AA   + L       G  V  V+  
Sbjct: 278 AYGVNGFTPDHWQALKQHQVRQVLIAFDNDPAGNDAA---VKLAAELTATGIAVFRVVFP 334

Query: 355 RGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383
            G D + ++      + AF  L+  ++ + D
Sbjct: 335 EGMDANGYLCQVAEPERAFGLLLDSAVSMQD 365


>gi|15828924|ref|NP_326284.1| DNA primase [Mycoplasma pulmonis UAB CTIP]
 gi|18202663|sp|Q98QB3|PRIM_MYCPU RecName: Full=DNA primase
 gi|14089867|emb|CAC13626.1| DNA PRIMASE [Mycoplasma pulmonis]
          Length = 602

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 126/618 (20%), Positives = 243/618 (39%), Gaps = 42/618 (6%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69
            +L    +SNLIG+ +    +        +WA CPFHD+K  S   +D K  + CFSC+V
Sbjct: 10  KILEKTTLSNLIGKLISIKPKGK-----SFWALCPFHDDKNASLSISDQKAMFSCFSCNV 64

Query: 70  KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129
           +G    F S  L  S++E    LA    +       + EK  + +   I +  +A  +F 
Sbjct: 65  RGGLFVFYSKFLNKSYVEVANMLAKEFDLDFHFDQQEKEKYNENEQLFIDVTSIANHYFK 124

Query: 130 HSLKN--ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
            SLK+    + +L  +L  RGI       F++GY           +  K         + 
Sbjct: 125 VSLKSQVHSNSKLVDFLKSRGISRETASEFEIGYD----DGNFWKIPNKEKKNFSFFLSN 180

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247
            LI    +   YD F  R++FPI +S G V+ F GR L +   +KYLNSPE+++F K K 
Sbjct: 181 NLIVKKETNQYYDFFYKRVVFPIHNSFGDVVGFSGRALDENN-IKYLNSPESLVFKKHKI 239

Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           LYN+  A            +      + + EG+MD ++L + G++N ++ +GT L+  QL
Sbjct: 240 LYNWAKAKE----------KAIQEKKLYITEGFMDTIALYKIGIKNAIAIMGTNLSNEQL 289

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
            L+      ++   DGD  G  A Y    ++   +   ++++ +     +DPD  ++  G
Sbjct: 290 ELI-PKDIELIFFLDGDQAGKNAVYN---ILKKIIKMRSKISVIENDSKQDPDELLKQKG 345

Query: 368 KTAFEKLIVESLPLVDMLWKR--ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
               ++LI ++             T   + N  +            ++  ++  +   Y 
Sbjct: 346 ANFLKELIEKNKKPAIDYLYEFLLTSKYNINNSEHLISFVNDFAPLLSS-QNNIVIDKYE 404

Query: 426 QAIRDR---LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
             +      +++       ++    +Y     R  ++    ++      +  K  +   +
Sbjct: 405 NLLMKHSINIRKFLTYQNQKYDRINQYNSLQQRFYEEPKQKKKANSREEILKKQYQNLYV 464

Query: 483 REAALLLTLINHPA--ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +    LL         +     + +   + +N +  KL   L      QK    E   + 
Sbjct: 465 KLLLSLLNSNALLEYFLRHNIEERIIFEQTNNGQESKLKDILRKIIKIQKEKKSETTIED 524

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLL------S 592
           L       L   L +       ++   + ++    + + Y +     K  + L       
Sbjct: 525 LPLEDQEILRWYLQKDSWFKSDYAKEGDLDLLANQISESYLEYEKSQKISKTLEMPSLDE 584

Query: 593 RQKEEIEKQIAQVTAKGE 610
            +++ +++ I Q  +K +
Sbjct: 585 EKQKILKRVILQRRSKND 602


>gi|225551026|ref|ZP_03771972.1| DNA primase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225378841|gb|EEH01206.1| DNA primase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
          Length = 392

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 97/400 (24%), Positives = 184/400 (46%), Gaps = 31/400 (7%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +   + IS++I  Y+   ++  N     YWA CPFH++   S   ND K  + CF+C+  
Sbjct: 12  IRNAVNISDVIQNYIKVIKKGNN-----YWAICPFHNDTNESLSINDKKQIFKCFACNHA 66

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRLIEVATDFF 128
           GD + F++     S+  + Q +  +  + L +++   +   +E  +  +  L +    +F
Sbjct: 67  GDVIKFVAEYKKISYALAAQEILQLMNLDLNLLNHLQKISPQEIKKNKVFDLNKQIQKWF 126

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS---------RYSLREHLRQKGFS 179
            + L N  +  +  YL +R ++   +  FK+GYAP++          Y+       +   
Sbjct: 127 INFLNNKNNIHVIDYLAKRNLNKSDLAYFKIGYAPNNDELLNLIKSNYNNLIQENDEFEL 186

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + I  + L+ID +     +D F +R+IF I      V+ F GR ++  ++ KYLN+  T
Sbjct: 187 NKLIENSFLVIDKNG--NYHDFFNDRIIFSIYDHLNNVVGFSGRIIASEKTPKYLNTKTT 244

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K + LYNF              +   ++  + +VEG+MDV+++ ++   NVV+++G
Sbjct: 245 SVFKKDEILYNFH-----------NVITIENNHQLFIVEGFMDVITIHKSNKPNVVATMG 293

Query: 300 TALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
             LT   L L+     + ++LCFD D  G  A  K I + L +      +     +  +D
Sbjct: 294 VELTNKHLELIKSYGIKDLILCFDNDQAGFLATKKQI-MKLINSPFNIFIVDHKDNDCKD 352

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398
            D +   +G +A  KL+ + L + + L    +        
Sbjct: 353 MDEYANKHGYSATSKLLDQQLHISEFLLLEISNTNKSTPH 392


>gi|50122324|ref|YP_051491.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043]
 gi|49612850|emb|CAG76300.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043]
          Length = 963

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 88/393 (22%), Positives = 149/393 (37%), Gaps = 45/393 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLI---GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
             P   ++ L   + +  ++   G+ V   +R        +   CPFH E TPS   +  
Sbjct: 3   RIPESELQHLKAAVSLVEVVRGQGRKVV--KRGKG-----WVVLCPFHQENTPSCVISPD 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----KIEKKEKIQ 114
           K  Y+CF C   G  L ++    G S   +V +L   AG  +P             E+ +
Sbjct: 56  KNLYHCFGCDAGGSVLDWVMKTEGLSLPHAVDKLRREAG-EMPATAALPPVADIANEQER 114

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L   +   T+F+HH+L NA  + + Y    R      +  F+LG+A     +L   L 
Sbjct: 115 QAL---LHRVTEFYHHTLLNAP-EAVAYLEKRRLHHPELVAQFRLGFA---NRTLGYRLP 167

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
            K   +   I A L   G    + ++     L+ P+    GQV    GR L         
Sbjct: 168 SKKLKDGAAIRAQLQAIGVMRDSGHEHLAGSLVVPVIDINGQVRELYGRKLCDKLRAGT- 226

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
                      K+LY     L      +  +    +S  +IL E  +D +S   AG +NV
Sbjct: 227 ----------PKHLY-----LPGPHGGVWNEQALVASRSVILCESLVDAMSFWVAGYRNV 271

Query: 295 VSSLGTALTEYQLR--LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            ++ G      ++R   +     ++++ FD D  G   A   + L       G     V+
Sbjct: 272 TAAYGVNGFTDEMRQAFIRHGVKQVLIAFDNDTAGDDGA---VKLASALAADGIAPFRVV 328

Query: 353 LSRGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383
              G D + ++      + AF  L+  +LP+ +
Sbjct: 329 FPSGMDANGYLCQVAEPEAAFGLLVDGALPMGE 361


>gi|289811715|ref|ZP_06542344.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 98

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 42/100 (42%), Positives = 55/100 (55%), Gaps = 5/100 (5%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             PR FI DLL    I +LI   V   ++  N     Y ACCPFH+EKTPSF  N  K F
Sbjct: 4   RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
           Y+CF C   G+ + FL       F+E+V+ LAA+  + +P
Sbjct: 59  YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIP 98


>gi|225550889|ref|ZP_03771838.1| DNA primase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225380043|gb|EEH02405.1| DNA primase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 386

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 98/400 (24%), Positives = 184/400 (46%), Gaps = 31/400 (7%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +   + IS++I  Y+   ++  N     YWA CPFH++   S   ND K  + CF+C+  
Sbjct: 6   IRNAVNISDVIQNYIKVIKKGNN-----YWAICPFHNDTNESLSINDKKQIFKCFACNHA 60

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRLIEVATDFF 128
           GD + F++     S+  + Q +  +  + L +++   +   +E  +  +  L +    +F
Sbjct: 61  GDVIKFVAEYKKISYALAAQEILQLMNLDLNLLNHLQKISPQEIKKNKVFDLNKQIQKWF 120

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS---------RYSLREHLRQKGFS 179
            + L N  +  +  YL +R ++   +  FK+GYAP++          Y+       +   
Sbjct: 121 INFLNNKNNIHVIDYLAKRNLNKSDLAYFKIGYAPNNDELLNLIKSNYNNLIQENDEFEL 180

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
            + I  + L+ID +     +D F +R+IF I      V+ F GR ++  ++ KYLNS  T
Sbjct: 181 NKLIENSFLVIDKNG--NYHDFFNDRIIFSIYDHLNNVVGFSGRIIASEKTPKYLNSKTT 238

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
            +F K + LYNF              +   ++  + +VEG+MDV+++ ++   NVV+++G
Sbjct: 239 SVFKKDEILYNFH-----------NVITIENNHQLFIVEGFMDVITIHKSNKPNVVATMG 287

Query: 300 TALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
             LT   L L+     + ++LCFD D  G  A  K I + L +      +     +  +D
Sbjct: 288 VELTNKHLELIKSYGIKDLILCFDNDQAGFLATKKQI-MKLINSPFNIFIVDHKDNDCKD 346

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398
            D +   +G +A  KL+ + L + + L    +        
Sbjct: 347 MDEYANKHGYSATSKLLDQQLHISEFLLLEISNTNKSTPH 386


>gi|261884441|ref|ZP_06008480.1| DNA primase [Campylobacter fetus subsp. venerealis str. Azul-94]
          Length = 124

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + I+++     I   I +YV+  +R  N     ++  CPFH E TPSF  ++ K  
Sbjct: 6   RIAEESIEEIRTKTDIVEFISEYVNLTKRGRN-----WFGLCPFHGENTPSFSVSEDKQI 60

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107
           ++CF C   G+ ++FL  +    F+E+V  L    G+ +       
Sbjct: 61  FHCFGCGAGGNAITFLMDIENIPFVEAVATLKDRIGIHVDAGTQAQ 106


>gi|218512957|ref|ZP_03509797.1| DNA primase [Rhizobium etli 8C-3]
          Length = 117

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/101 (55%), Positives = 74/101 (73%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ ++   +PISN++ + V WD+RKTN  +GDYWACCPFH EK+PSFHC D KG
Sbjct: 1   MRFSNTFLDEIRDRVPISNVVARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
            Y+CF C V GDH  FL+ L G SF E+VQ++A +AGVP+P
Sbjct: 61  RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPMP 101


>gi|50122331|ref|YP_051498.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043]
 gi|50122340|ref|YP_051507.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043]
 gi|49612857|emb|CAG76307.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043]
 gi|49612866|emb|CAG76316.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043]
          Length = 959

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 150/393 (38%), Gaps = 45/393 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLI---GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
             P   ++ L   +P+  ++   G+ V   +R       D+   CPFH E TPS   +  
Sbjct: 3   RIPESELQHLKAAVPLVEVVRAQGRKVV--KRGK-----DFVVLCPFHQENTPSCVISPE 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----KIEKKEKIQ 114
           K  Y+CF C   G  L ++    G S   +V +L    G  +P  +P         E+ +
Sbjct: 56  KNLYHCFGCDAGGSVLDWVMKTEGLSLPHAVDKLRGELG-SVPAAEPLPPVSDIANEQER 114

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L   +   T F+HH+L NA  + + Y    R      +  F+LG+A  +        +
Sbjct: 115 QAL---LHRVTAFYHHTLLNAP-EAIAYLEKRRLNHPELVAQFRLGFANRTLGYRLPSSK 170

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
            K       + + L   G   ++ ++     L+ P+    GQV    GR +         
Sbjct: 171 LKDG---ATVRSQLQAIGVLRSSGHEHLAGSLVVPVIDMSGQVRELYGRKVGDRLRAGTP 227

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N           +LY     L      +  +    +S  +IL E  +D +S   AG +NV
Sbjct: 228 N-----------HLY-----LPGPHGGVWNEQALVASKSVILCESLIDAMSFWVAGYRNV 271

Query: 295 VSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            ++ G      ++R  +      ++++ FD D  G   A   + L    +  G     V+
Sbjct: 272 TAAYGVNGFTDEMRKAFIGHGVKQVLIAFDNDTAGDDGA---VKLASSLVAEGITPFRVV 328

Query: 353 LSRGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383
              G D + ++      + AF  ++  ++ + +
Sbjct: 329 FPSGMDANEYLCKVSEPEQAFRAVVEGAMAMGE 361


>gi|71065816|ref|YP_264543.1| DNA primase [Psychrobacter arcticus 273-4]
 gi|71038801|gb|AAZ19109.1| probable DNA primase [Psychrobacter arcticus 273-4]
          Length = 720

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 5/131 (3%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P   ++ L     + ++IG++    R       G++  CCPFH EK+PSF+ N  K 
Sbjct: 1   MSIPNHILEQLNSQADLVSIIGRHTTLKRAG-----GEFKGCCPFHGEKSPSFYVNPQKN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V G+ +SFL      +FIE+V  L+   G+ +P  + +    ++ +      
Sbjct: 56  IYHCFGCSVGGNAISFLRDYENLTFIEAVNELSKQTGIEVPKEEQQNVSYQRAKPKPKSA 115

Query: 121 IEVATDFFHHS 131
           I+ AT   H  
Sbjct: 116 IKPATSATHLQ 126



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 97/331 (29%), Positives = 157/331 (47%), Gaps = 19/331 (5%)

Query: 104 DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAP 163
                       +L  L+E    F+ H+L  +      +Y   RGI     E F LGYAP
Sbjct: 208 SFDNNNDSNEDGNLYDLLEKIQQFYQHNL--SIHPHAKHYFLSRGISDEIFETFGLGYAP 265

Query: 164 DSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR 223
                L     Q    + + ++A  L+    S   YD  R+R+IFPIR ++G+ I FGGR
Sbjct: 266 FGWQHLEHQFPQ----DIEGLKALGLVRRSESGRDYDLLRDRVIFPIRDNQGRTIGFGGR 321

Query: 224 TLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV 283
            L      KY+NS ++ +FHK   LY ++ +                S+  ++VEGYMDV
Sbjct: 322 ALDDEVKPKYINSSDSPVFHKQHVLYGYYESRQ------------KRSNDWLVVEGYMDV 369

Query: 284 LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343
           ++L Q G+   ++S+GTA+ E Q+  L  L+P + L FDGD  G +AA++ +++ L  L 
Sbjct: 370 IALYQVGIYGAIASMGTAINESQISRLLTLNPTLTLSFDGDSAGQKAAWRTLEVALPVLS 429

Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
               + F+ L    DPD+FI+  G  A  + IV ++PL   ++   +E       + +A+
Sbjct: 430 DEKELRFLTLPNNHDPDTFIKSQGADAMREQIVNAMPLSQYIFAYLSERHDLTLVEGKAK 489

Query: 404 LEIHLKNCINHIK-DQKLRYYYSQAIRDRLQ 433
           L   ++     +      RY  +  I  +L 
Sbjct: 490 LMSQVRALTTALPKGSSFRYLLNNDIYQKLG 520


>gi|256004392|ref|ZP_05429373.1| zinc finger CHC2-family protein [Clostridium thermocellum DSM 2360]
 gi|255991676|gb|EEU01777.1| zinc finger CHC2-family protein [Clostridium thermocellum DSM 2360]
          Length = 129

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 7/122 (5%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           YP + I+++ +   I +++G+YV  +R+  N     Y+  CPFH EKTPSF  + +K  Y
Sbjct: 5   YPEELIEEIRMSNDILSVVGEYVKLERKGKN-----YFGLCPFHSEKTPSFSVDPNKQLY 59

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRL 120
           YCF C   G  + F+  +    +IE+V+ LA  A + LP  D + +    EK +  L  +
Sbjct: 60  YCFGCGKGGSVIQFVMEVENLDYIEAVKMLAERARIQLPEGDNEKKGLLPEKSRNFLELM 119

Query: 121 IE 122
           ++
Sbjct: 120 LK 121


>gi|50123202|ref|YP_052369.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043]
 gi|50123211|ref|YP_052378.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043]
 gi|49613728|emb|CAG77179.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043]
 gi|49613737|emb|CAG77188.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043]
          Length = 972

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 90/393 (22%), Positives = 151/393 (38%), Gaps = 45/393 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLI---GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
             P   ++ L   +P+  ++   G+ V   +R       D+   CPFH EKTPS   +  
Sbjct: 3   RIPESELQHLKAAVPLVEVVRAQGRQVF--KRGK-----DWVVLCPFHQEKTPSCVISLE 55

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----KIEKKEKIQ 114
           K  Y+CF C   G  + ++    G S   +V RL A  G  LP V P         E+ +
Sbjct: 56  KNLYHCFGCDAGGSVIDWVMKTEGLSLHRAVDRLRAELG-ALPAVAPLPPVADIADEQER 114

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L   +    DF+HH+L NA  + + Y           +  F+LG+A     +L   L 
Sbjct: 115 QAL---LTRVIDFYHHTLLNAP-EAIAYLEKRHLNHPELVAQFRLGFA---NRTLAYRLP 167

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
            K   +   I   L   G    + ++     L+ P+    GQV    GR +S        
Sbjct: 168 PKKLKDGAAIRGQLQAIGVMRDSGHEHLAGSLVVPVIDLNGQVRELYGRKVSTELRKGT- 226

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
                               L      +  +    +   +IL E  +D +S   AG +NV
Sbjct: 227 ---------------PLHLYLPGPHGGVWNEQALVAGKTVILCESLIDAMSFWVAGYRNV 271

Query: 295 VSSLGTALTEYQLR--LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            ++ G      ++R   +     ++++ FD D+ G  AA K  +     +  G     V+
Sbjct: 272 TAAYGVNGVTDEMRQAFIRHGVKQVLIAFDNDEAGNTAAVKLAE---SLVTDGITPFRVV 328

Query: 353 LSRGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383
              G D + ++      +TAF  L+  +LP+ +
Sbjct: 329 FPSGMDANGYLCQVAEPETAFGLLVDGALPMGE 361


>gi|120536958|ref|YP_957016.1| DNA primase catalytic core [Marinobacter aquaeolei VT8]
 gi|120326792|gb|ABM21101.1| DNA primase catalytic core, N-terminal domain [Marinobacter
           aquaeolei VT8]
          Length = 666

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 105/451 (23%), Positives = 180/451 (39%), Gaps = 51/451 (11%)

Query: 9   KDLLIHIPISNLIGQY-----VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
           + +  H     ++ +Y     V+  +    A        CPF +EKTPSF  ND KG Y 
Sbjct: 36  EKIKQHY----VLSRYIEDSGVELKQMGREA-----VGLCPFKEEKTPSFSVNDEKGVYL 86

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---------Q 114
           C  C   GD +++++   G S   +++ LA   G  +     +  +K +          +
Sbjct: 87  CRGCGATGDIITYVAESTGVSQGRAIRLLAEKMGYQIRSESDRQGEKGRKASTSINRASR 146

Query: 115 TDLIRLIEVATDFFHHSL---KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS------ 165
           +D+I + +      H  L    +     +  YL +R    + ++ + LG+ P        
Sbjct: 147 SDMIEVHDHTAQVAHAYLLCVLSDPQHPVSRYLKQRAFGPNLVKRYGLGFLPSDSPLWSH 206

Query: 166 -RYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT 224
              S   + +   FS                      F+ RL+FPI +  G+ +AF GR 
Sbjct: 207 ISGSSAYNAQPTSFSAPHWRTLAQESGLLKDRHQVSMFQGRLLFPITNGDGRCVAFSGRV 266

Query: 225 LSKGE------SVKYLNSPETILFHKGKNLYN--FFGALNYLQKSIRKDVRRNSSSFIIL 276
           +   E        KYLNSPE+ +F K + LY    + A    +       R  S++ ++ 
Sbjct: 267 VPGMESTAIMPDRKYLNSPESFIFSKSQTLYGVTPWHATLNHEGVREAWRRIKSANRVVA 326

Query: 277 VEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID 336
           VEG  DVL + +      V+SLGTA+T+  + LL++ +  I +  DGD  G+ A+ +A+ 
Sbjct: 327 VEGVTDVLRIAELD-TWAVASLGTAITQTHIALLFRFADTICMLTDGDSAGIAASERALL 385

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
           +    L  G R     L + EDPD++        F+ ++    P  +  W   +      
Sbjct: 386 IGFSQLSAGKRFVAAHLPQKEDPDTY--------FQGVVQCPNPC-EHFWHLISGLPHAQ 436

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
                 +  I + N    I D  L       
Sbjct: 437 PEQVWFDRVIGMVNSPVSIGDAVLIDQALSE 467


>gi|317009820|gb|ADU80400.1| DNA primase DNA G [Helicobacter pylori India7]
          Length = 263

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 78/268 (29%), Positives = 124/268 (46%), Gaps = 20/268 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M   ++F + L   I I  ++  Y+D  +   N     + ACCPFHDE+  SF  +  K 
Sbjct: 1   MKI-KNF-EGLKDRIQILEVLENYIDLYKIGAN-----FKACCPFHDERNASFIVSPEKN 53

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y CF C V GD L FL      +FIE+V+ +A I    L         K +    L  +
Sbjct: 54  IYKCFGCGVSGDALKFLQEYKKLNFIEAVEEVAQIYHYALEYETD---AKIEQNNHLKEI 110

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +  A + F   LKN   + L Y  ++R I    IE + LG+       L   + ++ FS 
Sbjct: 111 LAFANNLFKERLKNEP-RALEYLTNKRAISLEMIEAYDLGFCLP----LDLEVLKERFSV 165

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT-----LSKGESVKYLN 235
            ++I +GL  + +           R+  P++ S+GQ+ +F  R      L   ++ KY+N
Sbjct: 166 SELISSGLFSNKNEQQELKCFCNYRITIPLKDSKGQIRSFSARLYIPRFLRNDKAPKYIN 225

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIR 263
             ET LF+K   L+N+  AL  +++  R
Sbjct: 226 GRETSLFNKSFFLFNYHRALENIKEKNR 253


>gi|9256898|pdb|1EQN|A Chain A, E.Coli Primase Catalytic Core
 gi|9256899|pdb|1EQN|B Chain B, E.Coli Primase Catalytic Core
 gi|9256900|pdb|1EQN|C Chain C, E.Coli Primase Catalytic Core
 gi|9256901|pdb|1EQN|D Chain D, E.Coli Primase Catalytic Core
 gi|9256902|pdb|1EQN|E Chain E, E.Coli Primase Catalytic Core
          Length = 321

 Score =  173 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 110/330 (33%), Positives = 174/330 (52%), Gaps = 12/330 (3%)

Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172
            +  L +L +    F+  SL+         YL++RG+    I  F +G+AP    ++ + 
Sbjct: 4   QRQTLYQLXDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKR 63

Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
                 + + +I+AG L+  ++   SYDRFR R+ FPIR  RG+VI FGGR L   ++ K
Sbjct: 64  FGGNPENRQSLIDAGXLV-TNDQGRSYDRFRERVXFPIRDKRGRVIGFGGRVL-GNDTPK 121

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPET +FHKG+ LY  + A     +  R          +++VEGY DV++L Q G+ 
Sbjct: 122 YLNSPETDIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYXDVVALAQYGIN 171

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
             V+SLGT+ T   ++LL++ +  ++ C+DGD  G  AA++A++  L +   G ++ F  
Sbjct: 172 YAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYXTDGRQLRFXF 231

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L  GEDPD+ +R  GK AFE    ++ PL   L+         +TPD RA L       I
Sbjct: 232 LPDGEDPDTLVRKEGKEAFEARXEQAXPLSAFLFNSLXPQVDLSTPDGRARLSTLALPLI 291

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
           + +  + LR Y  Q + ++L  L    +  
Sbjct: 292 SQVPGETLRIYLRQELGNKLGILDDSQLER 321


>gi|93005953|ref|YP_580390.1| DNA primase [Psychrobacter cryohalolentis K5]
 gi|92393631|gb|ABE74906.1| DNA primase [Psychrobacter cryohalolentis K5]
          Length = 716

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 5/112 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P   ++ L     + ++IG++    R  +     ++  CCPFH EK+PSF+ N  K 
Sbjct: 1   MSIPNHILEQLNSQADLVSIIGRHTTLKRAGS-----EFKGCCPFHGEKSPSFYVNPQKN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
            Y+CF C V G+ +SFL      +FIE+V  L+   G+ +P  + +    ++
Sbjct: 56  IYHCFGCSVGGNAISFLRDYENLTFIEAVNELSKQTGIEVPKEEQQNVSYQR 107



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 120/541 (22%), Positives = 212/541 (39%), Gaps = 38/541 (7%)

Query: 106 KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
                     +L  L+E    F+ H+L  +      +Y   RGI     E F LGYAP  
Sbjct: 206 NDNSISDKDGNLYELLEQIQQFYQHNL--SIHPHAKHYFLSRGISDEIFETFGLGYAPFG 263

Query: 166 RYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
              L     Q    + + ++A  L+    S   YD  R+R+IFPIR ++G+ I FGGR L
Sbjct: 264 WQHLEHQFPQ----DIEGLKALGLVRQSESGRDYDLLRDRVIFPIRDNQGRTIGFGGRAL 319

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
                 KY+NS ++ +FHK   LY ++ +                +   ++VEGYMDV++
Sbjct: 320 DDEVKPKYINSSDSPVFHKQHVLYGYYESRQ------------KRADNWLVVEGYMDVIA 367

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           L QAG+   ++S+GTA+ E Q+  L  L+P + L FDGD  G +AA++ +++ L  L   
Sbjct: 368 LYQAGIYGAIASMGTAINESQISRLLTLNPTLTLSFDGDSAGQKAAWRTLEVALPVLSDD 427

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             + F+ L    DPD+FI+  G  A  + I  ++PL   ++   +E       + +A+L 
Sbjct: 428 KELRFLTLPNNHDPDTFIKSQGGDAMREQIANAMPLSQYIFAYLSERHDLTLVEGKAKLM 487

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
             ++     +       Y           L    I +  G  R     A+          
Sbjct: 488 SQVRALTMALPKGSSFKY-----------LLNNDIYQKLGGKRSQNVEAKDALLDFDGDM 536

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL-WSFLFS 524
            +   L    L +  +L E  +   +     ++  +       +  N+ L+ + W  L  
Sbjct: 537 TISQQLQLCFLFQPRALLEDPV-EWIWQQSGLINLKLPAHIQKKSANDALRAITWEDLQD 595

Query: 525 DFVEQKYFLPEEIHQRLCERGFGE---LLKQL--DRQVRDAGLWSATTEANIVDVRQGYQ 579
             +       +   + L          +L  L    Q   +  W    +A          
Sbjct: 596 TALLDIVTAIKRCMKHLPIDANAAAHFVLSNLSPMNQATLSNSWGGFYKALTTRNVLSLD 655

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMI 638
             +      +LL R  ++  +++ +     +     +    L   +  Q  +  SQ A +
Sbjct: 656 DLIEELV-SQLLERNIKKKMQELIKNPDHIKQAIVNMQAQHLSNWIRAQRAERSSQMATV 714

Query: 639 E 639
           +
Sbjct: 715 K 715


>gi|330938478|gb|EGH42081.1| DNA primase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 502

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 130/516 (25%), Positives = 222/516 (43%), Gaps = 68/516 (13%)

Query: 152 HAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIR 211
                F LG+AP    +L +HL      ++ +I+AGLLI+   +   YDRFR+R++FPIR
Sbjct: 3   EIARDFGLGFAPPGWDNLYKHLSSDSLQQKVMIDAGLLIENAETGKRYDRFRDRVMFPIR 62

Query: 212 SSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271
            SRG+VIAFGGR L   +  KYLNSPET +FHKG+ LY  F A  + +          + 
Sbjct: 63  DSRGRVIAFGGRVL-GDDKPKYLNSPETPVFHKGQELYGLFEARKFNR----------NL 111

Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAA 331
             II+VEGYMDV++L Q G++N V++LGTA +E  L+ L+++ P ++ CFDGD  G  AA
Sbjct: 112 DEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLFRVVPNVLFCFDGDQAGRNAA 171

Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRET 390
           ++A++  L +L  G R +F+ L  GEDPD+ +R  G  AF+  +   + PL D  +++ T
Sbjct: 172 WRALEATLSNLQDGRRAHFLFLPEGEDPDTLVRSEGTDAFKARINQHAQPLADYFFEQLT 231

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT--------- 441
           +     + + +A +       I+ +    LR    Q + +      +             
Sbjct: 232 KESDPRSLEGKAHMATLAAPLIDKVPGANLRILMRQRLTEITGLTGEAVSQLVQSAPAEA 291

Query: 442 ---------------------------EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                                      +     +      + +       +  +    + 
Sbjct: 292 PPSYDPYVDYDAMPDFADYQPQGGYEPQQEWTQKKTGGPNQKKWDNKSWGKKGKRQDFEP 351

Query: 475 KLSKKPSLRE---AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
           +  + P+  E    A L TL++HP + ++  +  +    ++    +L   L     +   
Sbjct: 352 RTPRVPTAVEPPMQAALRTLLHHPELAEKV-ENASHFAAEDQSNAQLLVALIEARQKNPN 410

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++  R      G LL+ L  +      W    +            +L+  +R R L
Sbjct: 411 LRSLQLIARWHGTEQGRLLRALAEKE-----WLIEADNLEQQFFDTIT-SLSARQRERSL 464

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                +  +           E +A     L E+  +
Sbjct: 465 EHLISKARQ----------TELSAEEKIQLRELLNR 490


>gi|148653372|ref|YP_001280465.1| DNA primase [Psychrobacter sp. PRwf-1]
 gi|148572456|gb|ABQ94515.1| DNA primase [Psychrobacter sp. PRwf-1]
          Length = 705

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P   +  L     +  +IG++    R        ++   CPFH EKTPSF+ N  K 
Sbjct: 1   MSIPNHILDQLNSQADLVGIIGKHTTLKRAGK-----EFKGNCPFHGEKTPSFYVNPQKN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107
            Y CF C V G+ + FL      +F+E+VQ L+   G+ +P  D K 
Sbjct: 56  VYNCFGCGVSGNAIKFLREYENQTFMEAVQELSRQTGIEIPKEDNKD 102



 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 120/521 (23%), Positives = 213/521 (40%), Gaps = 59/521 (11%)

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           +L  L+     F+ ++L+N        Y  ERG+    I  F LGYAP     L E   Q
Sbjct: 211 NLYELLIQIGQFYQNNLRNNL--HAMAYFTERGLTDATINEFGLGYAPTGWQHLEEAFPQ 268

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
               +   ++A  L+        YD  R+R+IFPIR ++G++I F GR L      KY+N
Sbjct: 269 ----DIAGLKALGLVRQSEKGRDYDLLRDRVIFPIRDNQGRIIGFAGRALDNEVKPKYIN 324

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S ++ +FHK   LY ++ +                ++  ++VEGYMDV++L QAG+   V
Sbjct: 325 SSDSPVFHKQHVLYGYYESRQ------------QRANDWLVVEGYMDVIALYQAGIYGAV 372

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           +S+GT++ E Q+  L +++P + LCFDGD  G +AA++ +++ L  L     + F+ L  
Sbjct: 373 ASMGTSINETQIARLLQMNPTLTLCFDGDSAGQKAAWRTLEVALPVLSDDKELRFLTLPG 432

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G DPD++I   G  A  + I  ++PL   ++   +E    +  + +A+L   ++   N++
Sbjct: 433 GHDPDTYIAMQGVEAMREHIKRAMPLSQYIFAYLSERYDLSLAEGKAKLMSQVRQLTNNL 492

Query: 416 K-DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                 +Y  +  I  +L              GR  +KN+ H         +  S  ++ 
Sbjct: 493 PKGSSFKYLLNNDIYQKLG-------------GRKNQKNSAHDVLLDFDSDMTVSRQLEL 539

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELAD---------------IRYDNNELQKLW 519
            L   P L     +  L     +   +  E +                  +++  L +L 
Sbjct: 540 CLLFAPHLLAEDPIKRLWEVSGVADIKIPEKSIGTQQAPVATPPLPSWEDFNSPSLTQLT 599

Query: 520 SFLFS---DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
             +        E        I   L       L  +      +          ++VD   
Sbjct: 600 QTIIGLTPYLPEDTNAAAHFILANLPNGLQQNLATRWHPFWSNLNQRGIIDVDDLVDDLL 659

Query: 577 GYQQALALYKRF---------RLLSRQKEEIEKQIAQVTAK 608
                 AL K+            L+RQ++ +   + +  A+
Sbjct: 660 TQLMLQALSKQMSQSPGLVITSHLNRQRQTLMNWLKKQQAE 700


>gi|13508092|ref|NP_110041.1| DNA primase [Mycoplasma pneumoniae M129]
 gi|2494145|sp|P75426|PRIM_MYCPN RecName: Full=DNA primase
 gi|1674174|gb|AAB96131.1| DNA primase [Mycoplasma pneumoniae M129]
          Length = 620

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 110/649 (16%), Positives = 220/649 (33%), Gaps = 62/649 (9%)

Query: 4   PRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
               +  L   I I+ ++  Y +   ++       D+ A CPFH ++ PS   + +K  +
Sbjct: 3   SPTSLDQLKQQIKIAPIVEHYAIKLKKKGK-----DFVALCPFHADQNPSMTVSVAKNIF 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-LPVVDPKIEKKEKIQTDLIRLI 121
            CFSC V GD ++F+  +    +  ++ +  +I  +     V+  +++ +        L 
Sbjct: 58  KCFSCQVGGDGIAFIQKIDQVDWKTALNKALSILNLDSQYAVNFYLKEVDPKLKRYWDLH 117

Query: 122 EVATDFFHHSLK---NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
               D++   LK     +         +            L +  + +Y L   L     
Sbjct: 118 SALVDYYQTRLKLEPKEQGLTYLTETRKLSPQVIERFQLGLAFTLEDQYFLPSLLNYPWI 177

Query: 179 S--------EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
           S             +    +   N  T Y  F++R++ PI   +G  + F GR L K E 
Sbjct: 178 SPAIEKAELCFATEKFPEALGFFNQQTHYATFKSRIMIPIHDLKGNPVGFSGRALQKTEK 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
           +KY NS E   F K + L+NF        K             + LVEGY DV +L  AG
Sbjct: 238 IKYKNSAEHQWFKKSELLFNFHRIDKNTLK-------------LYLVEGYFDVFALTSAG 284

Query: 291 VQNVVSSLGTALTEYQLRLLWKL---SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           + +VV  +G AL+E  +    +       +VL  D D  G  A +K   L+      G  
Sbjct: 285 IGDVVGLMGLALSESHIIAFQQQLKALETVVLALDNDTAGHDATFK---LLQELNAHGII 341

Query: 348 VNFVLLSR--GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
           V  V  ++   +D D      G  A +     +     +               +     
Sbjct: 342 VEVVDWNQAAYKDWDELFLAEGSDAVK-----AKTHRVLNLVEYLVAYFKTKGFDERITV 396

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
             + + I   +       +S+ +  +LQQL Q    E        +K     ++     +
Sbjct: 397 NKVIDIIAQNQKVTADTSFSRFLCQKLQQLLQYSDVETLFTQLQQQKLKVKVNKTTTFTQ 456

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                     +       E+  +              + L +  +   + +   + +F+ 
Sbjct: 457 RAPIYESVVGVVDNSFRNESQPVAI----------TKEFLVENNWKETKERVFHAEIFAY 506

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE---ANIVDVRQGYQQAL 582
                  L ++    L +    EL   L   + D  L+        A + +       ++
Sbjct: 507 V-----LLDKQFLVELKQSDLDELFASLQTPLFDVALFIDKARLYWAKVQEPDWAVFNSI 561

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
              ++    +    +I++     +   + E     +    ++ ++  ++
Sbjct: 562 LGEQQAMFPTTFLAQIKEFFLNKSLSYDPEDYEEDLQFFRQLIVKQKEL 610


>gi|301633210|gb|ADK86764.1| DNA primase [Mycoplasma pneumoniae FH]
          Length = 620

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 109/649 (16%), Positives = 220/649 (33%), Gaps = 62/649 (9%)

Query: 4   PRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
               +  L   I I+ ++  Y +   ++       D+ A CPFH ++ PS   + +K  +
Sbjct: 3   SPTSLDQLKQQIKIAPIVEHYAIKLKKKGK-----DFVALCPFHADQNPSMTVSVAKNIF 57

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-LPVVDPKIEKKEKIQTDLIRLI 121
            CFSC V G+ ++F+  +    +  ++ +  +I  +     V+  +++ +        L 
Sbjct: 58  KCFSCQVGGNGIAFIQKIDQVDWKTALNKALSILNLDSQYAVNFHLKEVDPKLKRYWDLH 117

Query: 122 EVATDFFHHSLK---NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
               D++   LK     +         +            L +  + +Y L   L     
Sbjct: 118 SALVDYYQTRLKLEPKEQGLTYLTETRKLSPQVIERFQLGLAFTLEDQYFLPSLLNYPWI 177

Query: 179 S--------EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
           S             +    +   N  T Y  F++R++ PI   +G  + F GR L K E 
Sbjct: 178 SPAIEKAELCFATEKFPEALGFFNQQTHYATFKSRIMIPIHDLKGNPVGFSGRALQKTEK 237

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
           +KY NS E   F K + L+NF        K             + LVEGY DV +L  AG
Sbjct: 238 IKYKNSAEHQWFKKSELLFNFHRIDKNTLK-------------LYLVEGYFDVFALTSAG 284

Query: 291 VQNVVSSLGTALTEYQLRLLWKL---SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           + +VV  +G AL+E  +    +       +VL  D D  G  A +K   L+      G  
Sbjct: 285 IGDVVGLMGLALSESHIIAFQQQLKALETVVLALDNDTAGHDATFK---LLQELNAHGII 341

Query: 348 VNFVLLSR--GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
           V  V  ++   +D D      G  A +     +     +               +     
Sbjct: 342 VEVVDWNQAAYKDWDELFLAEGSDAVK-----AKTHRVLNLVEYLVAYFKTKGFDERITV 396

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
             + + I   +       +S+ +  +LQQL Q    E        +K     ++     +
Sbjct: 397 NKVIDIIAQNQKVTADTSFSRFLCQKLQQLLQYSDVETLFTQLQQQKLKVKVNKTTTFTQ 456

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                     +       E+  +              + L +  +   + +   + +F+ 
Sbjct: 457 RAPIYESVVGVVDNSFRNESQPVAI----------TKEFLVENNWKETKERVFHAEIFAY 506

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE---ANIVDVRQGYQQAL 582
                  L ++    L +    EL   L   + D  L+        A + +       ++
Sbjct: 507 V-----LLDKQFLVELKQSDLDELFASLQTPLFDVALFIDKARLYWAKVQEPDWAVFNSI 561

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
              ++    +    +I++     +   + E     +    ++ ++  ++
Sbjct: 562 LGEQQAMFPTTFLAQIKEFFLNKSLSYDPEDYEEDLQFFRQLIVKQKEL 610


>gi|259909795|ref|YP_002650151.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96]
 gi|224965417|emb|CAX56949.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96]
          Length = 926

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 117/681 (17%), Positives = 212/681 (31%), Gaps = 93/681 (13%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
                 ++ L   + ++ ++  Q     +R       D    CPFH+EKTPS   + +K 
Sbjct: 3   RIAETELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVTLCPFHEEKTPSMVISPAKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115
            Y+CF C   G  L +L      S  ++V+RL A  G     VPL          E  + 
Sbjct: 58  LYHCFGCDAGGSVLDWLMHSENLSLRKAVERLRAELGENPALVPLVAQPDAFADDEAGRQ 117

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L   +E  T F+HH+L NA  + L Y    R      +  F+ G+A     +L   L  
Sbjct: 118 AL---LERVTAFYHHTLLNAP-EALAYLEKRRLNHPDLVAQFRPGFA---NRTLAYRLPP 170

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K   +   I + L   G    + ++ F   L+ P+    GQ+    GR + K +      
Sbjct: 171 KKLKDGAAIRSRLQALGIMRESGHEHFTGCLVVPVADLHGQIREVYGRKIDKPQRGM--- 227

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
                      +LY     L      +  +     S  +IL E  +D +S   AG +NV 
Sbjct: 228 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGWRNVT 273

Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           ++ G        R  +      ++++ FD D  G  AA   + L             ++ 
Sbjct: 274 AAYGVNGFTDDHRRAFAQHEIKQVLIAFDNDVAGNAAA---VRLAAELAAMQIDAFRIVF 330

Query: 354 SRGEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI----- 406
            +G D + ++      +  F  L+  + P+ D +                          
Sbjct: 331 PQGMDANGWLCRVAEPEREFGLLVESAQPMRDAVRVETPVAEPEPETLPALAASPSDPGV 390

Query: 407 -------------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
                               ++          +     Q +       F   +   S   
Sbjct: 391 VVERGDAGEVLISLGAQRWRVRGLAQVKPGAAVMKLSLQVLDRESGAAFADSLDLISARS 450

Query: 448 RYWKKNARHRDQKGPSQRLMQS-------------SLVKGKLSKKPSLREAALLLTLINH 494
           R         +       L +S                  + + + +  E A  L L+N 
Sbjct: 451 RGGYVRQAATELGLAEDDLRRSLGKVLLALENLAAQPQPEENAPQLTEAERAEALALLND 510

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
           P +      +LA           L +   +    +       + Q     G   L+  + 
Sbjct: 511 PDLSSRITGDLAACGVVGES-GNLLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMDAVL 569

Query: 555 RQVRDAGLW----------SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
             + +                  E+N+        +   + +    L   + + E  IA 
Sbjct: 570 NLMPEEERMQYSAMTGQSLFYLGESNLQHKILAIAEEEGVRQAAYALKLLQSDGELTIA- 628

Query: 605 VTAKGEAEKTAILISILHEVH 625
             + G+ E T  L++  + V 
Sbjct: 629 --STGKDEATGNLVTKQYRVK 647


>gi|332974185|gb|EGK11119.1| DNA primase [Psychrobacter sp. 1501(2011)]
          Length = 782

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 5/112 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P   +  L     +  +IG++    R        ++   CPFH EKTPSF+ N  K 
Sbjct: 31  MSIPNHILDQLNSQADLVGIIGKHTTLKRAGK-----EFKGNCPFHGEKTPSFYVNPQKN 85

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
            Y CF C V G+ +SFL      +F+E+V  L+   G+ +P  D K  +  K
Sbjct: 86  VYNCFGCGVGGNAISFLRDYENQTFMEAVTELSRQTGIEIPKEDNKDLRYRK 137



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 99/329 (30%), Positives = 172/329 (52%), Gaps = 19/329 (5%)

Query: 106 KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
           +   +     +L  L+   ++F+ H+L+   + R   Y  ERG+  + IE FKLGYAP  
Sbjct: 245 QDNAQNAQDGNLYELLVSISEFYQHNLR--HNSRAMSYFKERGLSDNIIEEFKLGYAPTG 302

Query: 166 RYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
              L +   Q    + + ++A  L+        YD  R+R+IFPIR ++G+VI F GR L
Sbjct: 303 WQHLEQAFPQ----DIEGLKALGLVRQSEKGRDYDLLRDRVIFPIRDNQGRVIGFAGRAL 358

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
                 KY+NS ++ +FHK   LY ++ +  +             ++  ++VEGYMDV++
Sbjct: 359 DNEVKPKYINSSDSPVFHKQHVLYGYYESRQH------------KANDWLVVEGYMDVIA 406

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           L QAG+   V+S+GTA+ E Q+  L +L+P + LCFDGD  G +AA++ +++ L  L   
Sbjct: 407 LYQAGIYGAVASMGTAINESQISRLLQLNPTLTLCFDGDSAGQKAAWRTLEVALPVLSDD 466

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             + F+ L  G DPD++I   G  A  + I +++PL   ++   +E    +  + +A+L 
Sbjct: 467 KELRFLTLPGGHDPDTYIALQGVDAMREQIKKAMPLSQYIFAYLSERYDLSMAEGKAKLM 526

Query: 406 IHLKNCINHIK-DQKLRYYYSQAIRDRLQ 433
             ++   N++      +Y  +  I  +L 
Sbjct: 527 SQVRQLTNNLPKGSSFKYLLNNDIYQKLG 555


>gi|253988430|ref|YP_003039786.1| DNA primase-like protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253988436|ref|YP_003039792.1| DNA primase-like protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253990474|ref|YP_003041830.1| DnaG primase-like protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638958|emb|CAR67573.1| dnag primase-like protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779880|emb|CAQ83041.1| putative DNA primase-like protein [Photorhabdus asymbiotica]
 gi|253779886|emb|CAQ83047.1| putative DNA primase-like protein [Photorhabdus asymbiotica]
 gi|253781924|emb|CAQ85088.1| dnag primase-like [Photorhabdus asymbiotica]
          Length = 922

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 93/392 (23%), Positives = 154/392 (39%), Gaps = 39/392 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P   ++ L   + +  ++ Q      +R       DY   CPFH EKTPS   + +K 
Sbjct: 3   RIPETELQHLKAAVSLVAVVEQQGRQLFKRGK-----DYVLLCPFHQEKTPSMVISPAKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115
            Y+CF C   G  L ++    G S   +V++L  I G     VPL   D      +    
Sbjct: 58  LYHCFGCDAGGSVLDWVMKTKGLSLRRAVEQLRGILGDNPSVVPLVQPDEPAMLADDDAG 117

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
               L+     F+HH+L NA  + L Y    R      +  FKLG+A     +L   L  
Sbjct: 118 R-QALLSRVVGFYHHTLLNAP-EALAYLEKRRLNHPELVAQFKLGFA---NRTLAYRLPI 172

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K       I A L   G    + ++ F   L+ P+    GQ+    GR ++         
Sbjct: 173 KAVQAGAQIRARLRAVGLMRDSGHEHFTGSLVIPVIDPNGQIREIYGRKITDRLRSGT-- 230

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
                      +LY   GA + +      +    SS  +IL E  +D LS   AG ++V 
Sbjct: 231 ---------PLHLY-LPGAHDGI----WNEPALISSGAVILCESLIDALSFWVAGHRHVT 276

Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           ++ G      ++R  ++     ++++ +D D  G  AA   + L       G  V  V+ 
Sbjct: 277 AAYGVNGFTDEMRQAFQRYGVKQVLIAYDNDPAGNEAA---VKLAAELTAVGITVFRVVF 333

Query: 354 SRGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383
             G D + ++      + AF  L+  ++P+ +
Sbjct: 334 PEGMDANGYLCQVAEPERAFGLLLDSAVPMQE 365


>gi|261885074|ref|ZP_06009113.1| DNA primase [Campylobacter fetus subsp. venerealis str. Azul-94]
          Length = 150

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
             I++L   + I++++G Y+   R  +     D+   CPFH++K PS   + SKG ++CF
Sbjct: 5   SSIENLKNIVDIADVVGSYLPLKRSGS-----DFVCVCPFHNDKNPSMRVSPSKGIFHCF 59

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
           SC   GD + F+      S+ E++++LA +    L   D K E     +     ++E   
Sbjct: 60  SCKAGGDSIKFIMDYEKLSYPEAIEKLANMYNFTLNYTDNKNEHHYDKK-----ILENLN 114

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGY 161
            ++   L     +    YL  RGI+   I+  +L +
Sbjct: 115 LYYKSMLYKN--REAINYLYSRGINDAMIKKCELCW 148


>gi|251771802|gb|EES52377.1| DNA primase [Leptospirillum ferrodiazotrophum]
          Length = 189

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 7/142 (4%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            ++++ +     +  +  +YV+  +R        +   CPFH+EK+PSF  +  K  YYC
Sbjct: 3   DEWVESVRRATDLVEVASRYVNLRKRGQK-----WVGLCPFHEEKSPSFQIDPDKQLYYC 57

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F CH  GD    +  L   SF E V+ LA  AG+PLP       ++ + +  L + + +A
Sbjct: 58  FGCHAGGDVFRLVEKLDHKSFGEVVRSLAQEAGIPLPER--GSAEERERRERLRKALLLA 115

Query: 125 TDFFHHSLKNARDKRLHYYLDE 146
            + +  +L + + +    YL E
Sbjct: 116 QELYRKALASPQGEPARRYLRE 137


>gi|226327184|ref|ZP_03802702.1| hypothetical protein PROPEN_01049 [Proteus penneri ATCC 35198]
 gi|225204402|gb|EEG86756.1| hypothetical protein PROPEN_01049 [Proteus penneri ATCC 35198]
          Length = 263

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 90/269 (33%), Positives = 151/269 (56%), Gaps = 14/269 (5%)

Query: 76  FLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRLIEVATDFFHHSLK 133
           FL       F+E+++ LAA+ G+ +P          +  I+ +L +++E    ++ ++L 
Sbjct: 7   FLMNYDRLDFVETIEELAAMHGLEVPYESGTGSSPIERHIRQNLYQVMERLNQYYSNALN 66

Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193
               +    YL  RG+    I  F +G+ P    ++ +   Q   +   ++EAG++I  +
Sbjct: 67  KPDAQEARNYLAHRGLSEEIITRFSIGFVPTGWDNVLKRFGQDADNRALLLEAGMVI-TN 125

Query: 194 NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFG 253
           ++  +YDRFR R++FPIR  RG+VIAFGGR L   +  KYLNSPET +FHKG+ LY  + 
Sbjct: 126 DNGRTYDRFRQRVMFPIRDRRGRVIAFGGRVL-GDDLPKYLNSPETEIFHKGRQLYGLYE 184

Query: 254 ALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKL 313
           A              N+ + +++VEGYMDV++L Q G+   V+SLGT+ T   ++LL++ 
Sbjct: 185 AQQS----------NNNVTKLLVVEGYMDVVALAQFGIDYAVASLGTSTTAEHIQLLFRT 234

Query: 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342
           +  I+ C+DGD  G  AA++A++  L   
Sbjct: 235 TDNIICCYDGDRAGRDAAWRALETALPFF 263


>gi|47092745|ref|ZP_00230531.1| DNA primase [Listeria monocytogenes str. 4b H7858]
 gi|47018933|gb|EAL09680.1| DNA primase [Listeria monocytogenes str. 4b H7858]
          Length = 420

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 106/427 (24%), Positives = 187/427 (43%), Gaps = 27/427 (6%)

Query: 149 IDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208
           +    +  F++G+AP+   ++   L ++G   +    AGLL + D+     DRFRNR++F
Sbjct: 1   MSEQMMTTFQIGFAPNHHATITAFLEKRGMDLQLAGRAGLLSERDDG-QMVDRFRNRIMF 59

Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRR 268
           PI + RGQ+IAF GR   + +  KYLNSPET +F+K + L++F  A   ++K        
Sbjct: 60  PITNDRGQIIAFSGRLFDRDDGPKYLNSPETPVFNKRRILFHFSEARQAIRKQ------- 112

Query: 269 NSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGL 328
                I L+EG+MDV+S  +AGVQN V+S+GT+LTE    L+ +L+ R ++C+DGD  G+
Sbjct: 113 ---EEITLMEGFMDVISAEEAGVQNAVASMGTSLTEEHADLIKRLTNRAIICYDGDRAGI 169

Query: 329 RAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWK 387
            AAYKA  L++           + L  G+DPD FIR  G   F++    + +        
Sbjct: 170 EAAYKAGTLLVERNRLDV--FVLQLPAGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIH 227

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
                R+     ++          I  +     R  Y + + D  +   +    +     
Sbjct: 228 YLRRERNLQNETDQIGYIDDCLREIAKLDQAVERELYLKQLADEFELTIETLKQQLQQSL 287

Query: 448 RYWKKNARHRDQKGPS-------------QRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
           +  +K+ +      P                ++ S     +     +  E  L+  ++  
Sbjct: 288 KNSQKSRQMASYNEPPIDDSFMGMMPQEETEMLFSFEQPTQKLSAHTTSEQQLMKAMMES 347

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
                   Q L D  + ++  + L+++L   F E     P +    + +     L+  L+
Sbjct: 348 RDNFLLIKQLLGDTTFYHDNYKALYTYLIGYFAEGNDADPTKFMDSVPDATMKGLISSLE 407

Query: 555 RQVRDAG 561
             +    
Sbjct: 408 MVISPDE 414


>gi|259909786|ref|YP_002650142.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96]
 gi|224965408|emb|CAX56940.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96]
          Length = 897

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 106/607 (17%), Positives = 193/607 (31%), Gaps = 75/607 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
                 ++ L   + ++ ++  Q     +R       D    CPFH+EKTPS   + +K 
Sbjct: 3   RIAETELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVTLCPFHEEKTPSMVISPAKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115
            Y+CF C   G  L +L      S  ++V+RL A  G     VPL          +    
Sbjct: 58  LYHCFGCDAGGSVLDWLMHSENLSLRKAVERLRAELGENPALVPLVAAAEPDVFADDEAG 117

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
               L+E  T F+H +L NA  + + Y    R      +  FK G+A     +L   L  
Sbjct: 118 R-QALLERVTAFYHQTLLNAP-EAIAYLEKRRLHHPELVAAFKPGFA---NRTLAYRLPP 172

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K   +   I A L   G    + ++ F   L+ P+    G++    GR + K +      
Sbjct: 173 KKLKDGAAIRARLQALGIMRESGHEHFTGCLVVPVADLHGRIREVYGRKIDKPQRGM--- 229

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
                      +LY     L      +  +     S  +IL E  +D +S   AG +NV 
Sbjct: 230 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGWRNVT 275

Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           ++ G        R  +      ++++ FD D  G  AA   + L    +        ++ 
Sbjct: 276 AAYGVNGFTDDHRRAFAQHEIKQVLIAFDNDAAGNGAA---VRLAAELVQMQIDTFRIVF 332

Query: 354 SRGEDPDSFIRC--YGKTAFEKLIVESLPLVD------MLWKRETENRSFNTPDERAELE 405
             G D + ++      +  F  L+  + P+ D      M+        + +  D    +E
Sbjct: 333 PAGMDANGYLCRVAEPEREFGLLVESAQPMRDAVTVPEMVVPETLPALAASPSDPGVVVE 392

Query: 406 I---------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
                            ++          +     Q +       F   +   S   R  
Sbjct: 393 RGEAGEVLIGLGAQRWRVRGLAQVKPGAAVMKLNVQVLDRESGAAFADSLDLISARSRGG 452

Query: 451 KKNARHRDQKGPSQRLMQS-------------SLVKGKLSKKPSLREAALLLTLINHPAI 497
                  +       L +S                  + + + + +E A  L L+  P +
Sbjct: 453 YVRQAAAELGLAEDDLRRSLGKVLLALENLTAQPQPEESAPQLTEQERAAALALLRCPDL 512

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
                 +LA           L +   +    +       + Q     G   L+  +   +
Sbjct: 513 SGRITDDLAACGVVGES-GNLLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMDAVLGLM 571

Query: 558 RDAGLWS 564
            +     
Sbjct: 572 PEEERMQ 578


>gi|293363642|ref|ZP_06610394.1| CHC2 zinc finger domain protein [Mycoplasma alligatoris A21JP2]
 gi|292552798|gb|EFF41556.1| CHC2 zinc finger domain protein [Mycoplasma alligatoris A21JP2]
          Length = 249

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/254 (27%), Positives = 120/254 (47%), Gaps = 20/254 (7%)

Query: 1   MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M   P   I +++    I  LI  +++  ++       D+   CPFH + TPS   +  K
Sbjct: 1   MKNIPEHIINEIIESTDIVALISSFLNLSKKGK-----DFVGLCPFHGDNTPSMSISSEK 55

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKIQT 115
             + CFSC+V G+ L+FL       ++E+++ LA   G             I K  K Q 
Sbjct: 56  QIFKCFSCNVGGNSLNFLMKYKNFKYLEAIKYLADFNGHSFDFSSYETAKNIPKYTKNQE 115

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            +I  ++ A   + +S+   +D +   YL +R +D++ ++ F +G++P+        +++
Sbjct: 116 LIIETLKAANLLYKNSVYENKDAQE--YLKKRMLDTNILDYFNIGFSPE------IGIKE 167

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K  +E       L   G  ++   +  R R+ F I ++ G +IAF GR L      KY+N
Sbjct: 168 KLVNEFNFKNFELNKAGIINSEFNEILRKRITFAITNNLGDIIAFSGRAL-GDLKPKYIN 226

Query: 236 SPETILFHKGKNLY 249
           SPET LF K   LY
Sbjct: 227 SPETELFKK-MLLY 239


>gi|253990480|ref|YP_003041836.1| DnaG primase-like protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638951|emb|CAR67566.1| dnag primase-like protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781930|emb|CAQ85094.1| dnag primase-like protein [Photorhabdus asymbiotica]
          Length = 927

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 147/392 (37%), Gaps = 43/392 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   ++ L   + +  ++ Q      RK      DY   CPFH EKTPS   +  K  
Sbjct: 31  RIPEAELQHLKAAVSLVAVVEQ----QGRKLVKRSKDYVLLCPFHQEKTPSMVLSPEKNL 86

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG--------VPLPVVDPKIEKKEKI 113
           Y+CF C+  G  L ++      S   + +RL A+ G        V         E +   
Sbjct: 87  YHCFGCNEGGSVLDWVMKTESLSLRHAAERLRALLGENPAVKPLVAPSEPALLAEDEAGR 146

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           Q  L R++E    F+HH+L NA  +   Y    R      +  F+LG+A     +L   L
Sbjct: 147 QALLHRVVE----FYHHTLLNAP-EMQAYLTQRRLNHPELVAHFRLGFA---NRTLGYRL 198

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             K       I A L   G    + ++ F   L+ P+ + +GQ+    GR +        
Sbjct: 199 PSKKLKPGAEIRARLRAVGLMRESGHEHFTGSLVVPVINPQGQIQEIYGRKIGDHLRAGT 258

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
                        +LY     L      +  +    ++  +I+ E  +D +S    G +N
Sbjct: 259 -----------PSHLY-----LPGAHGGVWNETALMAAKSLIVCESLIDAMSFWVTGHRN 302

Query: 294 VVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           V ++ G      ++          ++++ FD D  G  AA K  +     L+ G     V
Sbjct: 303 VTAAYGVNGVTADHWQAFERHGIKQVLIAFDNDSAGNEAAVKLAE---ALLVRGITPLRV 359

Query: 352 LLSRGEDPDSFI--RCYGKTAFEKLIVESLPL 381
           +     D + ++      + AF  L+  + P+
Sbjct: 360 MFPPEMDANDYLCQMAEPEAAFALLLESATPM 391


>gi|326570964|gb|EGE20988.1| DNA primase [Moraxella catarrhalis BC7]
          Length = 695

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN P   I+ L     +  +IG++             +Y  CCPFH EKTPSF+ N    
Sbjct: 1   MNIPESIIEQLNSQADLVGIIGKHTTLKAAGR-----EYKGCCPFHGEKTPSFYVNPETN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107
            YYCF CH KG+ ++FL      SFIESV+ L+   G+ LP  D   
Sbjct: 56  LYYCFGCHAKGNPITFLKEFERMSFIESVKFLSEQTGIELPKDDTDQ 102



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 103/432 (23%), Positives = 185/432 (42%), Gaps = 34/432 (7%)

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           DL  L+    D++   L N        Y  +RG+    I+ F LGYAPD    L +    
Sbjct: 191 DLYSLLTAVHDYYQLMLNNF--TFAKQYFLDRGLSEETIQTFGLGYAPDGWQHLEQVF-- 246

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
               E   I   +     ++  ++   R+R+IFPIR ++G+V+ F GR+L   E+ KY+N
Sbjct: 247 PQDIEGLKILGLVRESSKSNGRTFCLLRHRVIFPIRDNQGRVVGFAGRSL-GDENPKYIN 305

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S E+ +F K + LY  + +     K              +LVEGYMDV++L QAG+   V
Sbjct: 306 SSESPVFQKQQILYGLYESRKQKAK------------NYLLVEGYMDVIALYQAGIYGAV 353

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           + +GTA  E Q+  L + + ++ LCFDGD+ G +AA++ +++    L  G  + F+ L  
Sbjct: 354 APMGTAANEKQIERLLRYNNQLTLCFDGDNAGQKAAWRTLEIAAPILNDGRELKFLTLPD 413

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD++++ +G       I  ++ L D ++           P+ +A+    L+     +
Sbjct: 414 HHDPDTYLKSHGAAVMRDAIEGAVSLSDYIYGVLASQYDLTRPESKAQAMATLRQLTELL 473

Query: 416 K-DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                L+++ +  I  +L+ + ++           + ++         +  L+ + ++  
Sbjct: 474 PKGSSLKWWLNSDIYQKLKAIGREGQFSPKVELINYNRHDAADAITEIALHLIHTPILLK 533

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQY---QELADIRYDNNEL---QKLWSFLFSDFVE 528
                        L  +I H  + Q        L        +L       S L  + + 
Sbjct: 534 SDP----------LAFVIEHSGMAQAHLPLSNHLERQEISLPKLPNWASFKSPLLDEIIA 583

Query: 529 QKYFLPEEIHQR 540
               LP EI Q 
Sbjct: 584 TVSTLPNEILQD 595


>gi|296113274|ref|YP_003627212.1| DNA primase [Moraxella catarrhalis RH4]
 gi|295920968|gb|ADG61319.1| DNA primase [Moraxella catarrhalis RH4]
 gi|326565268|gb|EGE15453.1| DNA primase [Moraxella catarrhalis 12P80B1]
 gi|326575840|gb|EGE25763.1| DNA primase [Moraxella catarrhalis CO72]
          Length = 695

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN P   I+ L     +  +IG++             +Y  CCPFH EKTPSF+ N    
Sbjct: 1   MNIPESIIEQLNSQADLVGIIGKHTTLKAAGR-----EYKGCCPFHGEKTPSFYVNPETN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107
            YYCF CH KG+ ++FL      SFIESV+ L+   G+ LP  D   
Sbjct: 56  LYYCFGCHAKGNPITFLKEFERMSFIESVKFLSEQTGIELPKDDTDQ 102



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 103/432 (23%), Positives = 185/432 (42%), Gaps = 34/432 (7%)

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           DL  L+    D++   L N        Y  +RG+    I+ F LGYAPD    L +    
Sbjct: 191 DLYSLLTAVHDYYQLMLNNF--TFAKQYFLDRGLSEETIQTFGLGYAPDGWQHLEQVF-- 246

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
               E   I   +     ++  ++   R+R+IFPIR ++G+V+ F GR+L   E+ KY+N
Sbjct: 247 PQDIEGLKILGLVRESSKSNGRTFCLLRHRVIFPIRDNQGRVVGFAGRSL-GDENPKYIN 305

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S E+ +F K + LY  + +     K              +LVEGYMDV++L QAG+   V
Sbjct: 306 SSESPVFQKQQILYGLYESRKQKAK------------NYLLVEGYMDVIALYQAGIYGAV 353

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           + +GTA  E Q+  L + + ++ LCFDGD+ G +AA++ +++    L  G  + F+ L  
Sbjct: 354 APMGTAANEKQIERLLRYNNQLTLCFDGDNAGQKAAWRTLEIAAPILNDGRELKFLTLPD 413

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD++++ +G       I  ++ L D ++           P+ +A+    L+     +
Sbjct: 414 HHDPDTYLKSHGAAVMRDAIEGAVSLSDYIYGVLASQYDLTRPESKAQAMATLRQLTELL 473

Query: 416 K-DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                L+++ +  I  +L+ + ++           + ++         +  L+ + ++  
Sbjct: 474 PKGSSLKWWLNSDIYQKLKAIGREGQFSPKVELINYNRHDAADAITEIALHLIHTPILLK 533

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQY---QELADIRYDNNEL---QKLWSFLFSDFVE 528
                        L  +I H  + Q        L        +L       S L  + + 
Sbjct: 534 SDP----------LAFVIEHSGMAQAHLPLSNHLERQEISLPKLPNWASFKSPLLDEIIA 583

Query: 529 QKYFLPEEIHQR 540
               LP EI Q 
Sbjct: 584 TVSTLPNEILQD 595


>gi|326576923|gb|EGE26829.1| DNA primase [Moraxella catarrhalis O35E]
          Length = 695

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN P   I+ L     +  +IG++             +Y  CCPFH EKTPSF+ N    
Sbjct: 1   MNIPESIIEQLNSQADLVGIIGKHTTLKAAGR-----EYKGCCPFHGEKTPSFYVNPETN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107
            YYCF CH KG+ ++FL      SFIESV+ L+   G+ LP  D   
Sbjct: 56  LYYCFGCHAKGNPITFLKEFERMSFIESVKFLSEQTGIELPKDDTDQ 102



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 103/432 (23%), Positives = 185/432 (42%), Gaps = 34/432 (7%)

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           DL  L+    D++   L N        Y  +RG+    I+ F LGYAPD    L +    
Sbjct: 191 DLYSLLTAVHDYYQLMLNNF--TFAKQYFLDRGLSEKTIQTFGLGYAPDGWQHLEQVF-- 246

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
               E   I   +     ++  ++   R+R+IFPIR ++G+V+ F GR+L   E+ KY+N
Sbjct: 247 PQDIEGLKILGLVRESSKSNGRTFCLLRHRVIFPIRDNQGRVVGFAGRSL-GDENPKYIN 305

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S E+ +F K + LY  + +     K              +LVEGYMDV++L QAG+   V
Sbjct: 306 SSESPVFQKQQILYGLYESRKQKAK------------NYLLVEGYMDVIALYQAGIYGAV 353

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           + +GTA  E Q+  L + + ++ LCFDGD+ G +AA++ +++    L  G  + F+ L  
Sbjct: 354 APMGTAANEKQIERLLRYNNQLTLCFDGDNAGQKAAWRTLEIAAPILNDGRELKFLTLPD 413

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD++++ +G       I  ++ L D ++           P+ +A+    L+     +
Sbjct: 414 HHDPDTYLKSHGAAVMRDAIEGAVSLSDYIYGVLASQYDLTRPESKAQAMATLRQLTELL 473

Query: 416 K-DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                L+++ +  I  +L+ + ++           + ++         +  L+ + ++  
Sbjct: 474 PKGSSLKWWLNSDIYQKLKAIGREGQFSPKVELINYNRHDAADAITEIALHLIHTPILLK 533

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQY---QELADIRYDNNEL---QKLWSFLFSDFVE 528
                        L  +I H  + Q        L        +L       S L  + + 
Sbjct: 534 SDP----------LAFVIEHSGMAQAHLPLSNHLERQEISLPKLPNWASFKSPLLDEIIA 583

Query: 529 QKYFLPEEIHQR 540
               LP EI Q 
Sbjct: 584 TVSTLPNEILQD 595


>gi|326560263|gb|EGE10651.1| DNA primase [Moraxella catarrhalis 7169]
 gi|326562907|gb|EGE13194.1| DNA primase [Moraxella catarrhalis 46P47B1]
 gi|326566419|gb|EGE16569.1| DNA primase [Moraxella catarrhalis BC1]
          Length = 695

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN P   I+ L     +  +IG++             +Y  CCPFH EKTPSF+ N    
Sbjct: 1   MNIPESIIEQLNSQADLVGIIGKHTTLKAAGR-----EYKGCCPFHGEKTPSFYVNPETN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107
            YYCF CH KG+ ++FL      SFIESV+ L+   G+ LP  D   
Sbjct: 56  LYYCFGCHAKGNPITFLKEFERMSFIESVKFLSEQTGIELPKDDTDQ 102



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 103/432 (23%), Positives = 185/432 (42%), Gaps = 34/432 (7%)

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           DL  L+    D++   L N        Y  +RG+    I+ F LGYAPD    L +    
Sbjct: 191 DLYSLLTAVHDYYQLMLNNF--TFAKQYFLDRGLSEETIQTFGLGYAPDGWQHLEQVF-- 246

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
               E   I   +     ++  ++   R+R+IFPIR ++G+V+ F GR+L   E+ KY+N
Sbjct: 247 PQDIEGLKILGLVRESSKSNGRTFCLLRHRVIFPIRDNQGRVVGFAGRSL-GDENPKYIN 305

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S E+ +F K + LY  + +     K              +LVEGYMDV++L QAG+   V
Sbjct: 306 SSESPVFQKQQILYGLYESRKQKAK------------NYLLVEGYMDVIALYQAGIYGAV 353

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           + +GTA  E Q+  L + + ++ LCFDGD+ G +AA++ +++    L  G  + F+ L  
Sbjct: 354 APMGTAANEKQIERLLRYNNQLTLCFDGDNAGQKAAWRTLEIAAPILNDGRELKFLTLPD 413

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD++++ +G       I  ++ L D ++           P+ +A+    L+     +
Sbjct: 414 HHDPDTYLKSHGAAVMRDAIEGAVSLSDYIYGVLASQYDLTRPESKAQAMATLRQLTELL 473

Query: 416 K-DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                L+++ +  I  +L+ + ++           + ++         +  L+ + ++  
Sbjct: 474 PKGSSLKWWLNSDIYQKLKAIGREGQFSPKVELINYNRHDAADAITEIALHLIHTPILLK 533

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQY---QELADIRYDNNEL---QKLWSFLFSDFVE 528
                        L  +I H  + Q        L        +L       S L  + + 
Sbjct: 534 SDP----------LAFVIEHSGMAQAHLPLSNHLERQEISLPKLPNWASFKSPLLDEIIA 583

Query: 529 QKYFLPEEIHQR 540
               LP EI Q 
Sbjct: 584 TVSTLPNEILQD 595


>gi|326570227|gb|EGE20272.1| DNA primase [Moraxella catarrhalis BC8]
          Length = 695

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN P   I+ L     +  +IG++             +Y  CCPFH EKTPSF+ N    
Sbjct: 1   MNIPESIIEQLNSQADLVGIIGKHTTLKAAGR-----EYKGCCPFHGEKTPSFYVNPETN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107
            YYCF CH KG+ ++FL      SFIESV+ L+   G+ LP  D   
Sbjct: 56  LYYCFGCHAKGNPITFLKEFERMSFIESVKFLSEQTGIELPKDDTDQ 102



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 103/432 (23%), Positives = 185/432 (42%), Gaps = 34/432 (7%)

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           DL  L+    D++   L N        Y  +RG+    I+ F LGYAPD    L +    
Sbjct: 191 DLYSLLTAVHDYYQLMLNNF--TFAKQYFLDRGLSEETIQTFGLGYAPDGWQHLEQVF-- 246

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
               E   I   +     ++  ++   R+R+IFPIR ++G+V+ F GR+L   E+ KY+N
Sbjct: 247 PQDIEGLKILGLVRESSKSNGRTFCLLRHRVIFPIRDNQGRVVGFAGRSL-GDENPKYIN 305

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S E+ +F K + LY  + +     K              +LVEGYMDV++L QAG+   V
Sbjct: 306 SSESPVFQKQQILYGLYESRKQKAK------------NYLLVEGYMDVIALYQAGIYGAV 353

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           + +GTA  E Q+  L + + ++ LCFDGD+ G +AA++ +++    L  G  + F+ L  
Sbjct: 354 APMGTAANEKQIERLLRYNNQLTLCFDGDNAGQKAAWRTLEIAAPILNDGRELKFLTLPD 413

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD++++ +G       I  ++ L D ++           P+ +A+    L+     +
Sbjct: 414 HHDPDTYLKSHGAAVMRDAIEGAVSLSDYIYGVLASQYDLTRPESKAQAMATLRQLTELL 473

Query: 416 K-DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                L+++ +  I  +L+ + ++           + ++         +  L+ + ++  
Sbjct: 474 PKGSSLKWWLNSDIYQKLKAIGREGQFSPKVELINYNRHDAADAITEIALHLIHTPILLK 533

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQY---QELADIRYDNNEL---QKLWSFLFSDFVE 528
                        L  +I H  + Q        L        +L       S L  + + 
Sbjct: 534 SDP----------LAFVIEHSGMAQAHLPLSNHLERQEISLPKLPNWASFKSPLLDEIIA 583

Query: 529 QKYFLPEEIHQR 540
               LP EI Q 
Sbjct: 584 TVSTLPNEILQD 595


>gi|326563652|gb|EGE13904.1| DNA primase [Moraxella catarrhalis 103P14B1]
 gi|326573260|gb|EGE23228.1| DNA primase [Moraxella catarrhalis 101P30B1]
          Length = 695

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN P   I+ L     +  +IG++             +Y  CCPFH EKTPSF+ N    
Sbjct: 1   MNIPESIIEQLNSQADLVGIIGKHTTLKAAGR-----EYKGCCPFHGEKTPSFYVNPETN 55

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107
            YYCF CH KG+ ++FL      SFIESV+ L+   G+ LP  D   
Sbjct: 56  LYYCFGCHAKGNPITFLKEFERMSFIESVKFLSEQTGIELPKDDTDQ 102



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 103/432 (23%), Positives = 185/432 (42%), Gaps = 34/432 (7%)

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           DL  L+    D++   L N        Y  +RG+    I+ F LGYAPD    L +    
Sbjct: 191 DLYSLLTAVHDYYQLMLNNF--TFAKQYFLDRGLSEETIQTFGLGYAPDGWQHLEQVF-- 246

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
               E   I   +     ++  ++   R+R+IFPIR ++G+V+ F GR+L   E+ KY+N
Sbjct: 247 PQDIEGLKILGLVRESSKSNGRTFCLLRHRVIFPIRDNQGRVVGFAGRSL-GDENPKYIN 305

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           S E+ +F K + LY  + +     K              +LVEGYMDV++L QAG+   V
Sbjct: 306 SSESPVFQKQQILYGLYESRKQKAK------------NYLLVEGYMDVIALYQAGIYGAV 353

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           + +GTA  E Q+  L + + ++ LCFDGD+ G +AA++ +++    L  G  + F+ L  
Sbjct: 354 APMGTAANEKQIERLLRYNNQLTLCFDGDNAGQKAAWRTLEIAAPILNDGRELKFLTLPD 413

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DPD++++ +G       I  ++ L D ++           P+ +A+    L+     +
Sbjct: 414 HHDPDTYLKSHGAAVMRDAIEGAVSLSDYIYGVLASQYDLTRPESKAQAMATLRQLTELL 473

Query: 416 K-DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                L+++ +  I  +L+ + ++           + ++         +  L+ + ++  
Sbjct: 474 PKGSSLKWWLNSDIYQKLKAIGREGQFSPKVELINYNRHDAADAITEIALHLIHTPILLK 533

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQY---QELADIRYDNNEL---QKLWSFLFSDFVE 528
                        L  +I H  + Q        L        +L       S L  + + 
Sbjct: 534 SDP----------LAFVIEHSGMAQAHLPLSNHLERQEISLPKLPNWASFKSPLLDEIIA 583

Query: 529 QKYFLPEEIHQR 540
               LP EI Q 
Sbjct: 584 TVSTLPNEILQD 595


>gi|253988422|ref|YP_003039778.1| DNA primase-like protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253988444|ref|YP_003039800.1| DnaG primase-like protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779872|emb|CAQ83033.1| putative DNA primase-like protein [Photorhabdus asymbiotica]
 gi|253779894|emb|CAQ83055.1| dnag primase-like protein [Photorhabdus asymbiotica]
          Length = 899

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 147/392 (37%), Gaps = 43/392 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
             P   ++ L   + +  ++ Q      RK      DY   CPFH EKTPS   +  K  
Sbjct: 3   RIPEAELQHLKAAVSLVAVVEQ----QGRKLVKRSKDYVLLCPFHQEKTPSMVLSPEKNL 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG--------VPLPVVDPKIEKKEKI 113
           Y+CF C+  G  L ++      S   + +RL A+ G        V         E +   
Sbjct: 59  YHCFGCNEGGSVLDWVMKTESLSLRHAAERLRALLGENPAVKPLVAPSEPALLAEDEAGR 118

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           Q  L R++E    F+HH+L NA  +   Y    R      +  F+LG+A     +L   L
Sbjct: 119 QALLHRVVE----FYHHTLLNAP-EMQAYLTQRRLNHPELVAHFRLGFA---NRTLGYRL 170

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             K       I A L   G    + ++ F   L+ P+ + +GQ+    GR +        
Sbjct: 171 PSKKLKPGAEIRARLRAVGLMRESGHEHFTGSLVVPVINPQGQIQEIYGRKIGDHLRAGT 230

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
                        +LY     L      +  +    ++  +I+ E  +D +S    G +N
Sbjct: 231 -----------PSHLY-----LPGAHGGVWNETALMAAKSLIVCESLIDAMSFWVTGHRN 274

Query: 294 VVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           V ++ G      ++          ++++ FD D  G  AA K  +     L+ G     V
Sbjct: 275 VTAAYGVNGVTADHWQAFERHGIKQVLIAFDNDSAGNEAAVKLAE---ALLVRGITPLRV 331

Query: 352 LLSRGEDPDSFI--RCYGKTAFEKLIVESLPL 381
           +     D + ++      + AF  L+  + P+
Sbjct: 332 MFPPEMDANDYLCQMAEPEAAFALLLESATPM 363


>gi|229093362|ref|ZP_04224469.1| DNA primase [Bacillus cereus Rock3-42]
 gi|228690018|gb|EEL43819.1| DNA primase [Bacillus cereus Rock3-42]
          Length = 391

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 97/421 (23%), Positives = 170/421 (40%), Gaps = 31/421 (7%)

Query: 207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDV 266
           +FPI + +G+VIAF GR L   ++ KYLNSPET +FHK K LYNF  A  +++K      
Sbjct: 1   MFPIYTLQGKVIAFSGRAL-GDDTPKYLNSPETPIFHKSKLLYNFHQARPFIRK------ 53

Query: 267 RRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDP 326
                  ++L EGY DVL+  ++GV+  V+++GTALTE Q +LL +    +VLC+DGD  
Sbjct: 54  ----RGQVVLFEGYADVLAAVKSGVEEAVATMGTALTEEQAKLLRRNVETVVLCYDGDKA 109

Query: 327 GLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLW 386
           G  A  KA  L    L  G +V    L    DPD +++ YG TAFE L+  S+  V    
Sbjct: 110 GREATMKAGQL---LLNVGCQVKVTSLPDKLDPDEYVQQYGTTAFENLVKSSISFVGFKI 166

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
                 ++      + E    +   ++ ++D      Y +++        +  + +   Y
Sbjct: 167 NYLRLGKNLQDESGKEEYVKSVLKELSLLQDAMQAESYLKSLSQEFSYSMETLLNQLHQY 226

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
            +  K   +   Q     +++Q+              E  ++  ++  P +       + 
Sbjct: 227 RKEQKVQQKQVKQVSKPSQIVQT----KPKLTGFERAEREIIYHMLQSPEVAVRMESHIE 282

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
              +   E + +   L++ + +            L +     ++  +      +      
Sbjct: 283 --DFHTEEHKGILYELYAYYEKGNEPSVGTFLSWLSDEKLKNIITDI------STDEFIN 334

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            E           Q      R      +K EI  +I Q+      E     ++ L     
Sbjct: 335 PEYTEE-----VLQGHLETLRRHQEKLEKMEIIFKIKQMEKTDPVEAAKYYVAYLQNQKA 389

Query: 627 Q 627
           +
Sbjct: 390 R 390


>gi|325973629|ref|YP_004250693.1| DNA primase [Mycoplasma suis str. Illinois]
 gi|325990081|ref|YP_004249780.1| DNA primase [Mycoplasma suis KI3806]
 gi|323575166|emb|CBZ40828.1| DNA primase [Mycoplasma suis]
 gi|323652231|gb|ADX98313.1| DNA primase [Mycoplasma suis str. Illinois]
          Length = 649

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 116/610 (19%), Positives = 217/610 (35%), Gaps = 49/610 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           + ++        +  +I  Y+  ++R  N     +WA CPFHD+   S   ++ K  + C
Sbjct: 4   KSYLD--RKKYKVKEVIQNYLSLEKRGRN-----FWAICPFHDDTRASLSVSEEKNIFKC 56

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRLIE 122
           FSC V GD +SF+       F E+V +   +   P+  +       K    +  LI+   
Sbjct: 57  FSCGVTGDAISFVMKKENIPFNEAVFKAHTLLKFPIEQLSSIKFNSKDYLFKQQLIKFNN 116

Query: 123 VATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
             ++FF +SL +        YL +ER +    I+ FK+G++P     +    + +  SEE
Sbjct: 117 FVSEFFINSLNSEEGGEALQYLKEERKLSDFLIQKFKIGFSPAGEKLMNSIEQIRKISEE 176

Query: 182 KIIEAG--------LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SV 231
               +                S   +  F+NR++FPI S   ++I F  R L        
Sbjct: 177 FKFISDEFLLKTGIFSKSSGTSEKIFPIFQNRIVFPIFSQNQEIIGFTSRRLGNSNLSEA 236

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           KY++S ET+LF K   LYN                R +  SFI L EG  D+LS      
Sbjct: 237 KYIHSRETLLFKKANLLYNLPE-----------INRVSEDSFIYLFEGIFDLLSFQLISP 285

Query: 292 QNVV-SSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
           +++  + LG+ +++   RLL    S ++V+  D D  G  AA K    +L      + + 
Sbjct: 286 ESICFALLGSEMSDNGFRLLTKLPSKKLVIIMDNDQAGRNAALKLFQKMLK-YELNSHIL 344

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
            +     +D               LI    P+  + W +      +   ++     I + 
Sbjct: 345 PIDYGNNKDLSELYCSGS------LIQLPKPVDYIEWIQGNWRDLWKKEEKYITDIISVN 398

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             ++ + D   +             +   +             +      +       + 
Sbjct: 399 QIVHFLLDGLFQRDQRTQKIFLFSDIKYDFAFLQLSRIFSLYDSIEKTQFESEIIERAKQ 458

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
             ++    K    +E ++         I   + +          E  K+   +       
Sbjct: 459 KYIEAINVKAILPQEDSI------EIEIASLRRELSTPKDLTG-EFSKIVEIIQKLRESN 511

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    + I Q+L +     L +  +                + +V   ++  L + K   
Sbjct: 512 R--DLQLISQKLSDWETPFLFQYFENYQLGFSEKEIPFFLELKEVIANFRSDLIVQKTKY 569

Query: 590 LLSRQKEEIE 599
           L  ++ EEIE
Sbjct: 570 LSLQEGEEIE 579


>gi|296162694|ref|ZP_06845480.1| zinc finger CHC2-family protein [Burkholderia sp. Ch1-1]
 gi|295887082|gb|EFG66914.1| zinc finger CHC2-family protein [Burkholderia sp. Ch1-1]
          Length = 1005

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 141/380 (37%), Gaps = 44/380 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P   ++ L   + +  L+  + ++  +        D+   CPFH++ TPS     SK 
Sbjct: 3   RIPDAELERLKAEVSVEQLVRAHGIELVKSGR-----DWRGRCPFHEDGTPSLVVTPSKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQR-------LAAIAGVPLPVVDPKI-EKKEK 112
            ++CF C + G  + +     G SF  +V+        LAA AG        +  E    
Sbjct: 58  LWHCFGCGLGGGPVDWAMKANGISFRHAVELLREGIPALAAKAG---ERTTVRALESPVS 114

Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172
           ++ D   L++   D++H SLK++       YL++RGI +      +      +  +L   
Sbjct: 115 VEVDDAALLDQVVDYYHQSLKSS--PEALAYLEKRGIAAAV----EPFRLGFANRTLGLR 168

Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
           L +K     + I   L   G    + ++     ++F  R   G V    GR + + ++  
Sbjct: 169 LPEKNRVAGEAIRTRLQRIGVIRESGHEHLNGCIVFGWRDEAGHVAGLYGRKIVENQAR- 227

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
                     +  K+LY     L    + +           +I+ E  +D L+   AG  
Sbjct: 228 ----------NLPKHLY-----LPGPHRGVFNADGVRGQREVIVCESVIDALTFWCAGCT 272

Query: 293 NVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           NV ++ G          L++     R+++ +D D  G   A K   L     + G     
Sbjct: 273 NVTAAFGADGFTEDHLALFRAQGVERVIIAYDRDAAGDAGAQK---LAQRLTVEGIGCYR 329

Query: 351 VLLSRGEDPDSFIRCYGKTA 370
           V    G D + +       A
Sbjct: 330 VQFPHGLDANEYALKVTPAA 349


>gi|219109991|ref|XP_002176748.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411283|gb|EEC51211.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1192

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 128/612 (20%), Positives = 217/612 (35%), Gaps = 118/612 (19%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
               + + ++   I I ++I  Y + DR +  +      A CPFHD++ PS   + ++  
Sbjct: 79  RIDFNQLSEMKESIDIISVIESY-NLDRFERKSDDRA-TALCPFHDDENPSLSIDRTRKM 136

Query: 62  YYCFSCHVKGDHLSFLSAL-----LGCSFIESVQRLAAIAG---VP-----LPVVDPKIE 108
           Y CFSC   GD   F+           SF E+V  ++   G   V      +    P++ 
Sbjct: 137 YKCFSCGAGGDAFRFVREYSKLKGQQMSFYEAVLEVSTKFGDGHVEGIGKSVQAESPELR 196

Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS 168
           ++++    L      A  +    L          YL +RG+   A+  F LG+APD  Y 
Sbjct: 197 QRKER--TLYANAVAAAFY-ATCLTKPSAGGARQYLRQRGLTPEAVRTFALGFAPDFYYG 253

Query: 169 LREHLRQKGFSEEKIIEAGLL--------------------------------------- 189
                ++ G          L                                        
Sbjct: 254 ANRSRKKWGEDSLVQHMQSLNFTVDELLEAGLATETKTTEEPVQKFSFGEDPLLEGAFTS 313

Query: 190 ---IDGDNSATSYDRFRNRLIFPIRSSRG-QVIAFGGRTLSK-------GESVKYLNSPE 238
                     +  DRFR R++ PI    G  V+ FGGR L             KYLNSPE
Sbjct: 314 KPTSTSCPFDSIIDRFRFRIVVPIMDKAGANVLGFGGRILPSIVEMPNAYNPPKYLNSPE 373

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
           +++F K   L+    A   + K  +K      ++ +ILVEGYMDV+SL   GV+NVV+++
Sbjct: 374 SLVFKKKCILFGHSLAKETV-KQPKKSEHEQLANTLILVEGYMDVMSLWTIGVRNVVAAM 432

Query: 299 GTALTEYQLRLL--WKLSPRIVLCFDGDDPGLRAAYKAID---LVLCHLIPGNRVNFVLL 353
           GTA+T  QL +      +  +VLC D D  GL A  +      L       G  ++  LL
Sbjct: 433 GTAVTMDQLAIAAKSIRNGNLVLCLDNDSAGLLALERLCSNGLLSRIVSKYGTEISIALL 492

Query: 354 SRG-EDPDSFIRCYGKTAF--------EKLIVESLPLVDMLWKRETENR----------- 393
             G +DP  FI    + A          +++ +S   +D   ++  E+            
Sbjct: 493 PSGIKDPGEFIESKAEAASTTIADAFQTEVLSKSQDWIDWYLQQLLESYDSKAGRGRAGS 552

Query: 394 --------------SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
                         +    D          +      ++    + S A++++L+      
Sbjct: 553 FGDVFERVANFLANNMGPADRTKHACEIAVSLAKTTANEMGSDHASSAVQNQLESDLIDL 612

Query: 440 ITEHSGYGRYWKKNA----------RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            +  +   R  ++              +D      R    S  +       + + + LL 
Sbjct: 613 SSRLAEKKRAIQRRTELVNSDGNVGSQKDALFALTRGSGPSADESDKLSSSASKGSDLLS 672

Query: 490 TLINHPAILQEQ 501
             +N   +L + 
Sbjct: 673 VALNDVDLLDKF 684


>gi|218671696|ref|ZP_03521365.1| DNA primase [Rhizobium etli GR56]
          Length = 287

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 139/282 (49%), Positives = 180/282 (63%), Gaps = 2/282 (0%)

Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218
               P      +  L  KG ++E+I   GL++  +N   SYDRFR+R++FPI SSR +VI
Sbjct: 7   ASLCPRQPQCAQGILAGKGVTKEQIEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVI 65

Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS-SFIILV 277
           AFGGR +S     KYLNS ET LFHKG  LYNF  A   +Q   R D + +++   II V
Sbjct: 66  AFGGRAMSADAPAKYLNSNETELFHKGNVLYNFARARRAIQGPGRGDQQDDNASGTIIAV 125

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           EGYMDV++L QAGV+N V+ LGTALTE QL LLWK+ P+ VLCFDGD  G+RAA +A +L
Sbjct: 126 EGYMDVIALHQAGVENAVAPLGTALTENQLELLWKMVPQPVLCFDGDGAGIRAANRAAEL 185

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397
            L HL PG  V F LL  G+DPD  +R  G+  F+K++ ++ PL +MLW RE     F+T
Sbjct: 186 ALPHLKPGRSVRFALLPDGKDPDDLVRDEGRAPFDKVMSQAKPLSEMLWSREINTGKFDT 245

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
           P+ RAELE  LK  +  I D+ +R +Y Q IRDRL   FQ  
Sbjct: 246 PEARAELEARLKQLVAVIADENVRRHYQQDIRDRLNAFFQPQ 287


>gi|259909811|ref|YP_002650167.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96]
 gi|224965433|emb|CAX56965.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96]
          Length = 920

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 118/676 (17%), Positives = 206/676 (30%), Gaps = 89/676 (13%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P   ++ L   + ++ ++  Q     +R       D    CPFHDEKTPS   + +K 
Sbjct: 3   RIPEAELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVTLCPFHDEKTPSCVISPAKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115
            Y+CF C   G  L +L      S  ++V+RL A  G     VPL          E  + 
Sbjct: 58  LYHCFGCDAGGSVLDWLMHSENLSLRKAVERLRAELGENPALVPLVAQPDVFADDEAGRQ 117

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L   +E  T F+H +L NA  + + Y    R      +  F+ G+A     +L   L  
Sbjct: 118 AL---LERVTAFYHQTLLNAP-EAIAYLEKRRLNHPDLVAQFRPGFA---NRTLAYRLPP 170

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K   +   I A L   G    + ++ F   L+ P+    GQ+    GR + K +      
Sbjct: 171 KKLKDGAAIRARLQALGIMRESGHEHFTGCLVVPVADLHGQIREVYGRKIDKPQRGM--- 227

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
                      +LY     L      +  +     S  +IL E  +D +S   AG +NV 
Sbjct: 228 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGQRNVT 273

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ G        R  +     I       D        A+ L             ++  +
Sbjct: 274 AAYGVNGFTGDHRHAFARH-EIKQVLIAFDNDAAGNAAAVRLATELAAMQIDAFRIVFPQ 332

Query: 356 GEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFN--------TPDERAELE 405
           G D + ++      +  F  L   + P+ D +     E               D    +E
Sbjct: 333 GMDANGYLCRVAEPEREFGLLAGSAQPMRDAVTVPVAETVVPETLPSLAVGPSDPGVVVE 392

Query: 406 I---------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
                            ++          +     Q +       F   +   S   R  
Sbjct: 393 RGEAGEVLIGLGAQRWRVRGLAQVKPGAAVMKLSLQVLDRESGAAFADSLDLISARSRSG 452

Query: 451 KKNARHRDQKGPSQRLMQS-----------SLVKGKLSKKPSLREAALLLTLINHPAILQ 499
                  +       L +S           +         P L EA     L+N P +  
Sbjct: 453 YVRQAAAELGLAEDGLRRSLGKVLLALENLAAQPEAQESGPELTEAL---ALLNDPDLSS 509

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
               +LA           L +   +    +       + Q     G   L+  +   + +
Sbjct: 510 RITGDLAACGVVGES-GNLLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMDAVLNLMPE 568

Query: 560 AGLW----------SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
                             E+N+        +   + +    L   + + E  IA   + G
Sbjct: 569 EERMQYSAMTGQSLFYLGESNLQHKILAIAEEEGVRQAAYALKLLQSDGELTIA---STG 625

Query: 610 EAEKTAILISILHEVH 625
           + + T  L++  + V 
Sbjct: 626 KDDATGNLVTKQYRVK 641


>gi|259909802|ref|YP_002650158.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96]
 gi|224965424|emb|CAX56956.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96]
          Length = 928

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 112/679 (16%), Positives = 203/679 (29%), Gaps = 87/679 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P   ++ L   + ++ ++  Q     +R       D    CPFHDEKTPS   + +K 
Sbjct: 3   RIPEAELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVTLCPFHDEKTPSCVISPAKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115
            Y+CF C   G  L +L      S  ++V+RL A  G     VPL          +    
Sbjct: 58  LYHCFGCDAGGSVLDWLMHSENLSLRKAVERLRAELGENPALVPLVAAAEPDVFADDEAG 117

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
               L+E  T F+H +L NA  + L Y    R      +  F+ G+A     +L   L  
Sbjct: 118 R-QALLERVTAFYHQTLLNAP-EALAYLEKRRLNHPELVAQFRPGFA---NRTLAYRLPP 172

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K   +   I A L   G    + ++ F   L+ P+    G++    GR + K +      
Sbjct: 173 KKLKDGAAIRARLQALGIMRESGHEHFTGCLVVPVADLHGRIREVYGRKIDKPQRGM--- 229

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
                      +LY     L      +  +     S  +IL E  +D +S   AG +NV 
Sbjct: 230 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGQRNVT 275

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ G        R  +       +     D        A+ L             ++  +
Sbjct: 276 AAYGVNGFTGDHRHAFAQHGTKQVLI-AFDNDAAGNAAAVRLAAELAAMQIDAFRIVFPQ 334

Query: 356 GEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI------- 406
           G D + ++      +  F  L+  + P+ D +                            
Sbjct: 335 GMDANGWLCRVAEPEREFGLLVESAQPMRDAVRVETPVAEPEPETLPALAASPSDPGVIV 394

Query: 407 -----------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
                             ++          +     Q +       F   +   S   R 
Sbjct: 395 ERGEAGEVTIGLGAQRWRVRGLAQVKPGAAVMKLNVQVLDRESGAAFADSLDLISARSRS 454

Query: 450 WKKNARHRDQKGPSQRLMQS-------------SLVKGKLSKKPSLREAALLLTLINHPA 496
                   +       L +S                  +   + +  E A  L L+N P 
Sbjct: 455 GYVRQAAAELGLAEDDLRRSLGKVLLALENLAAQPEAQESGPELTEAERAEALALLNDPR 514

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           +      +LA           L +   +    +       + Q     G   L+  +   
Sbjct: 515 LSGRITDDLAACGVVGES-GNLLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMDAVLGL 573

Query: 557 VRDAGLW----------SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
           + +                  E+N+        +   + +    L   + + E  IA   
Sbjct: 574 MPEEERMQYSAMTGQSLFYLGESNLQHKILAIAEEEGVRQAAYALKLLQSDGELTIA--- 630

Query: 607 AKGEAEKTAILISILHEVH 625
           + G+ + T  L++  + V 
Sbjct: 631 STGKDDATGNLVTKQYRVK 649


>gi|310764969|gb|ADP09919.1| Dnag primase-like protein [Erwinia sp. Ejp617]
          Length = 941

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 148/392 (37%), Gaps = 42/392 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
                 ++ L   + ++ ++  Q     +R       D    CPFHDEKTPS     +K 
Sbjct: 3   RIAEAELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVTLCPFHDEKTPSCVITPAKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115
            Y+CF C   G  L +L      S  ++V+RL A  G     VPL          E  + 
Sbjct: 58  LYHCFGCDAGGSVLDWLMQSENLSLRKAVERLRAELGENPALVPLVAQPDAFADDEAGRQ 117

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L   +E  T F+H +L NA  + + Y    R      +  F+LG+A     +L   L  
Sbjct: 118 AL---LERVTAFYHQTLLNAP-EAIAYLEKRRLNHPDLVAQFRLGFA---NRTLAYRLPP 170

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K       I + L   G    + ++ F   L+ P+    GQ+    GR + K +      
Sbjct: 171 KKLKGGAAIRSRLQALGIMRESGHEHFTGCLVVPVVDLHGQIREVYGRKIDKPQRGM--- 227

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
                      +LY     L      +  +     S  +IL E  +D +S   AG++NV 
Sbjct: 228 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGLRNVT 273

Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           ++ G        R  +      ++++ FD D  G  AA   + L    +        ++ 
Sbjct: 274 AAYGVNGFTDDHRNAFAQHGTKQVLIAFDNDATGNVAA---VRLAAELVQMQIDTFRIVF 330

Query: 354 SRGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383
            +G D + ++      +  F  L+  + P+ D
Sbjct: 331 PQGMDANGYLCRVAEPEREFGLLVESAQPMRD 362


>gi|282890659|ref|ZP_06299182.1| hypothetical protein pah_c022o284 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499656|gb|EFB41952.1| hypothetical protein pah_c022o284 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 147

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           + ++ ++ L   I + +++  ++D  R         Y + CPFHDEK+ SF        Y
Sbjct: 4   FTKESLETLRQRIDLVDVLSAHLDLKRAGA-----SYKSLCPFHDEKSASFVVQKGDSHY 58

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF C   GD + FL   L  SF+E+V+ LA    V L  V+   E K   +  L   + 
Sbjct: 59  HCFGCGAHGDAIHFLMNHLKMSFLEAVEYLANRFHVHLDQVENGEETKTINKARLREALA 118

Query: 123 VATDFFHHSLKNAR 136
           +A +F+H +L +  
Sbjct: 119 LAAEFYHFALLHTP 132


>gi|12045104|ref|NP_072915.1| DNA primase [Mycoplasma genitalium G37]
 gi|255660252|ref|ZP_05405661.1| DNA primase [Mycoplasma genitalium G37]
 gi|1346796|sp|P47492|PRIM_MYCGE RecName: Full=DNA primase
 gi|3844848|gb|AAC71470.1| DNA primase [Mycoplasma genitalium G37]
 gi|166078931|gb|ABY79549.1| DNA primase [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 607

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 98/648 (15%), Positives = 214/648 (33%), Gaps = 75/648 (11%)

Query: 8   IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
           + +LL  I I+ +I  Y V    +          A CPFHD+K PS   + SK  + C++
Sbjct: 8   LDELLKQIKITEIIQHYGVKIQTKGN-----SLLALCPFHDDKNPSMSISSSKNIFKCWA 62

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRLIEVAT 125
           C+  G+ ++F+       +  ++++   I G+ L       + K +  Q     +     
Sbjct: 63  CNAAGNGIAFIQKHDQLDWKTALKKAIEICGIKLENWNSNLLTKVDPKQKRYWEINNALI 122

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMF-----------KLGYAPDSRYSLREHLR 174
            ++   LK   +     YL E+   +  +              K       RY       
Sbjct: 123 TYYQTRLKRETNPNGMNYLVEKRKLNKTLIEQFQLGLAFHNEDKYLCESMERYPFINPKI 182

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           +              +   +  T    F+N+++ PI    G  + F  R++     +KY 
Sbjct: 183 KPSELYLFSKTNQQGLGFFDFNTKKATFQNQIMIPIHDFNGNPVGFSARSVDNINKLKYK 242

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           NS +   F KG+ L+NF                  + + + +VEGY DV +L  +  +  
Sbjct: 243 NSADHEFFKKGELLFNFHR-------------LNKNLNQLFIVEGYFDVFTLTNSKFE-A 288

Query: 295 VSSLGTALTEYQLRLLWKLSPR---IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           V+ +G AL + Q++ +         +VL  D D  G  A +  I+ +  +      V   
Sbjct: 289 VALMGLALNDVQIKAIKAHFKELQTLVLALDNDASGQNAVFSLIEKLNNNNFIVEIVQ-- 346

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
                +D D      G         +   L++       + +  +      ++   L   
Sbjct: 347 WEHNYKDWDELYLNKGSEQVILQANKRQNLIEY-LVSFFKKQQLDQRVITNKIIAFLTKN 405

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
              + D     +  + +   L+   +K + E     +    +    ++   +        
Sbjct: 406 QTILNDHSFLIFLIKNLVKLLEYSDEKTLYETVLKHKEKLVSKFDNNRFYINTSGHAQP- 464

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                                  P  LQ+    L    ++    +     +F+       
Sbjct: 465 -----------------------PQELQKTTAALVQTAFEEAVNELWKPEIFAFA----- 496

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN-IVDVRQGYQQALALYKRFRL 590
            + +     L +    E+ K+ +  + D  L+          +    +    ++  +  L
Sbjct: 497 LIDKRFLVELKQSHLDEVFKECNFNLFDVELFIEKARIYWSENQTANWVGFESVLDQNYL 556

Query: 591 LSRQKEEIEKQ---IAQVT--AKGEAEKTAILISILHEVHIQIHQIES 633
           L+ +   +E +   + ++T     + +        L  +  Q  ++++
Sbjct: 557 LNNKARLLEIKDIFLDELTCYQANDFQNYLKTFQTL--LKQQKQRLKN 602


>gi|325678014|ref|ZP_08157653.1| putative DNA primase [Ruminococcus albus 8]
 gi|324110294|gb|EGC04471.1| putative DNA primase [Ruminococcus albus 8]
          Length = 434

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 106/418 (25%), Positives = 182/418 (43%), Gaps = 39/418 (9%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
            +   I  +I    +  +         Y   CPF       F+  + +  ++CF+C   G
Sbjct: 48  KMKNKILKIISIKTNLKQVG----DRLYRGKCPFCG--AVQFYVFEGENCFHCFNCGSNG 101

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHS 131
           D   F        +  +V              D  + KK      + ++   A +FF+ +
Sbjct: 102 DQADF-MHKYNVHYKNAV-------------GDRNVAKKPYNLQKIYKMNYDAANFFYKN 147

Query: 132 LKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190
           L + +D     Y +++R +    I  F++GYA  + +SL+E++ + G++ E++++  L I
Sbjct: 148 LFSKKDTACLDYLINKRKLTVKTICNFRMGYADKNYFSLKEYMLKLGYTIEELLQGSL-I 206

Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250
               +    D F NR +FP     G +I FGGR L    + KYLNS  T  + K   L++
Sbjct: 207 TVSKNDEIIDFFNNRAVFPFIDLNGNIIGFGGRKLDGDNNFKYLNSKNTPCYSKNNYLFS 266

Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310
              A+  +                IL EG +DV+SL QAG +  ++S GT+LTE Q  LL
Sbjct: 267 LNFAMKKI----------CCGETPILCEGNLDVISLHQAGFRTAIASCGTSLTENQAALL 316

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
            K S ++++C+D D+ G  AA KAID+       G     V +S  +DPD +I+ +G   
Sbjct: 317 KKYSDKVIICYDNDEAGKNAADKAIDI---LEKAGLETYIVFMSEAKDPDEYIKEFGSQK 373

Query: 371 FEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCI---NHIKDQKLRYYY 424
           F +LI  S    +     R  +       D +      +       N+  ++ +R  +
Sbjct: 374 FYELIKNSTKDPIYFRMSRIADKYDLTDYDAQRCFLKEVTELSLRKNYDPERTIRETF 431


>gi|310764976|gb|ADP09926.1| Dnag primase-like protein [Erwinia sp. Ejp617]
          Length = 920

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 146/392 (37%), Gaps = 42/392 (10%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
                 ++ L   + ++ ++  Q     +R       D    CPFHDEKTPS     +K 
Sbjct: 3   RIAEAELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVTLCPFHDEKTPSCVITPAKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115
            Y+CF C   G  L +L      S  ++V+RL A  G     VPL          E  + 
Sbjct: 58  LYHCFGCDAGGSVLDWLMQSENLSLRKAVERLRAELGENPALVPLVAQPDAFADDEAGRQ 117

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L   +E  T F+H +L NA  + + Y    R      +  F+LG+A     +L   L  
Sbjct: 118 AL---LERVTAFYHQTLLNAP-EAIAYLEKRRLNHPDLVAQFRLGFA---NRTLAYRLPP 170

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K       I + L   G    + ++ F   L+ P+    GQ+    GR + K +      
Sbjct: 171 KKLKGGAAIRSRLQALGIMRESGHEHFTGCLVVPVVDLHGQIREVYGRKIDKPQRGM--- 227

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
                      +LY     L      +  +     S  +IL E  +D +S   AG++NV 
Sbjct: 228 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGLRNVT 273

Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           ++ G        R  +      ++++ FD D  G  AA   + L    +        ++ 
Sbjct: 274 AAYGVNGFTDDHRNAFAQHGTKQVLIAFDNDATGNVAA---VRLAAELVQMQIDTFRIVF 330

Query: 354 SRGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383
             G D + ++      +  F  L   + P+ D
Sbjct: 331 PAGMDANGYLCRVAEPEREFGLLAGSAQPMRD 362


>gi|262360744|gb|ACY57465.1| DNA primase [Yersinia pestis D106004]
          Length = 396

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 111/401 (27%), Positives = 185/401 (46%), Gaps = 38/401 (9%)

Query: 197 TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALN 256
            +YDRFR R++FPIR  RG+VIAFGGR L      KYLNSPET +FHKG+ LY  + A  
Sbjct: 9   RTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPETEIFHKGRQLYGLYEA-- 65

Query: 257 YLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR 316
                    V   + + +++VEGYMDV++L Q G+   V+SLGTA T   ++LL++ +  
Sbjct: 66  --------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGTATTAEHIQLLFRATDN 117

Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376
           ++ C+DGD  G  AA++A++  L +L  G ++ F+ L  GEDPD+ +R  GK AFE+ + 
Sbjct: 118 VICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVRKEGKDAFEQRME 177

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            + PL   L++        ++PD RA+L       I+ +  + LR Y  Q + ++L  L 
Sbjct: 178 AAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGEALRLYLRQQLGNKLGLLD 237

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
              + +            +    K  +                       L+  L+ +P 
Sbjct: 238 DSQLDKLMPKQIDNANTYQPPQLKRTTM--------------------RILIGLLVQNPQ 277

Query: 497 ILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
           +       Q L   +        L+  L    + Q      ++ +   +  F + L+ L 
Sbjct: 278 LATLIPSLQGLEQAKLAGLP---LFIELVETCLAQPGLTTGQLLELYRDNKFSQQLETLA 334

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
               +  +     E   VD       ++   ++  L++R +
Sbjct: 335 TW--NHMIVEDMVEPTFVDTLASLYDSILEQRQETLIARDR 373


>gi|213027803|ref|ZP_03342250.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 377

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 105/424 (24%), Positives = 185/424 (43%), Gaps = 50/424 (11%)

Query: 207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDV 266
           +FPIR  RG+VI FGGR L   ++ KYLNSPET +FHKG+ LY  + A  Y  +  R   
Sbjct: 1   MFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPETDIFHKGRQLYGLYEAQQYSAEPQR--- 56

Query: 267 RRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDP 326
                  +++VEGYMDV++L Q  +   V+SLGT+ T   + +L++ +  ++ C+DGD  
Sbjct: 57  -------LLVVEGYMDVVALAQYDINYAVASLGTSTTADHMHMLFRATNNVICCYDGDRA 109

Query: 327 GLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLW 386
           G  AA++A++  + ++  G +V F+ L  GEDPD+ +R  GK AFE  + ++ PL   L+
Sbjct: 110 GRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVRKEGKAAFEARMEQAQPLSTFLF 169

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
                    ++PD   +L       IN +     R    Q +  +L       +      
Sbjct: 170 NSLLPQVDLSSPDGSTQLAALALPLINQVPGDTHRIQLRQTLGLKLGIFDDSQLDRLV-- 227

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ--YQE 504
                          P+ +L ++++               L+  L+ +P +         
Sbjct: 228 -----PKQAESGVSRPAPQLKRTTM-------------RILIGLLVQNPDLAPLVPPLDA 269

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
           L   +     L  L+  L    + Q      ++ +          L++L        +W 
Sbjct: 270 LDQNKL--PGLG-LFKELVKTCLAQPGLTTGQLLELYRGTNDAATLEKL-------SMWD 319

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG-EAEKTAILISILHE 623
              +  I    + +  +L  +    LL  ++EE+   IA+    G  +E+   L ++  E
Sbjct: 320 DIADKAI--AEKTFTDSLN-HMFDSLLQLRQEEL---IARDRTHGLSSEERRELWTLNQE 373

Query: 624 VHIQ 627
           +  +
Sbjct: 374 LARK 377


>gi|330686106|gb|EGG97727.1| toprim domain protein [Staphylococcus epidermidis VCU121]
          Length = 354

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 87/377 (23%), Positives = 150/377 (39%), Gaps = 23/377 (6%)

Query: 207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDV 266
           +FP+++++G+++ +  RT    +  KYLNSPET +F K K LYN   A   ++K      
Sbjct: 1   MFPLKNAQGRIVGYSART-YTNQEPKYLNSPETPIFQKRKLLYNLDKARKSIRK------ 53

Query: 267 RRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDP 326
               +  IIL+EG+MDV+    AG++ VV+S+GT L+   +  + KL+  I L FDGD  
Sbjct: 54  ----NDEIILLEGFMDVIKSDHAGLKTVVASMGTQLSNEHVTFIKKLTSNITLMFDGDFA 109

Query: 327 GLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLW 386
           G  A  K        L  G  V  V L    DPD +IR YG  AF + + +      M  
Sbjct: 110 GREATLKTGQ---ALLEQGLNVFVVQLPSDMDPDEYIRKYGNDAFIEFVQKDKKSFVMFK 166

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
               ++   N      +    +   I  +    L+    Q + +  +  F+    E  G 
Sbjct: 167 VNTHKDEIQNNDLAYEKYLKEVTQDIAAMTSPILQKKVLQDVAELFKVSFETLDYEV-GL 225

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
            +  + N         +       +++     +    E ALL   +         +Q++ 
Sbjct: 226 RQQSQGNVPSYPDYAYAYEGQPQQVIQFNQLTRHEKAERALLKHFLQDKDTFLNYHQQIE 285

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
              + N   +++++ L   +     +    + Q +      E L  LD  V +       
Sbjct: 286 VDDFTNAYFKRIFNILHDYYSNNDTYQLSSMIQYIDSDDLREALISLDSHVLN------- 338

Query: 567 TEANIVDVRQGYQQALA 583
            E       + Y   L 
Sbjct: 339 -EEPFEHELEDYINILK 354


>gi|269214558|ref|ZP_06158649.1| DNA primase [Neisseria lactamica ATCC 23970]
 gi|269209457|gb|EEZ75912.1| DNA primase [Neisseria lactamica ATCC 23970]
          Length = 431

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 130/454 (28%), Positives = 218/454 (48%), Gaps = 31/454 (6%)

Query: 144 LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR 203
           +D+RG+ +  I  + LGYAPD    L +    + +    +++ G++ID       YDRFR
Sbjct: 1   MDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--QPYPNTALVDTGMVIDN--EGRHYDRFR 56

Query: 204 NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIR 263
           +R++FPIR+ RGQVI FGGR L      KYLNSP+T LF KGKNLY  +     ++++ R
Sbjct: 57  HRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNSPDTPLFDKGKNLYGLYEGRAAVKEAGR 115

Query: 264 KDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDG 323
                     I++VEGYMDV++L Q GV   V++LGTA T   +++L + +  I  CFDG
Sbjct: 116 ----------ILVVEGYMDVVALAQFGVGYGVAALGTATTAEHVKILMRQADSIYFCFDG 165

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK-LIVESLPLV 382
           D  G +AA++A++  L  L     ++F+ L    DPDS+IR YGKT FE  L+ +S PL 
Sbjct: 166 DSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRAYGKTQFEDALLNQSKPLS 225

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
           +  W+  +++ + NT + +AEL       +  I    L Y   Q + + +          
Sbjct: 226 EYFWEHLSDDLNLNTQEGKAELVKTSSPLLVQITAPALGYLLKQRLSELVGIDPDNLAQL 285

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                   K++ + ++ K P   + Q  +        P+L +  +   LIN P       
Sbjct: 286 LGQ--EVPKRHVKQKNYKLPPISVKQPVM--------PTLVQRQIRSLLIN-PDWAAYI- 333

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
            +L D    + +   L +   +           +I + +    + E + ++ R    +  
Sbjct: 334 -DLPDYLALDGDFACLANLAETIKNHPSVPATAQILEHMRGSPYEETINRIFRSALQSEE 392

Query: 563 WSATTEANIVDVRQGYQQALALYK--RFRLLSRQ 594
                E +  + + G ++ L   K  +   L ++
Sbjct: 393 MEGGGEEDCENFQIGIKKLLNELKYSQIEALKQK 426


>gi|259907779|ref|YP_002648135.1| DnaG primase-like protein [Erwinia pyrifoliae Ep1/96]
 gi|259909772|ref|YP_002650128.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96]
 gi|259909779|ref|YP_002650135.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96]
 gi|224963401|emb|CAX54889.1| DnaG primase-like protein [Erwinia pyrifoliae Ep1/96]
 gi|224965394|emb|CAX56926.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96]
 gi|224965401|emb|CAX56933.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96]
          Length = 894

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 116/674 (17%), Positives = 210/674 (31%), Gaps = 84/674 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
                 ++ L   + ++ ++  Q     +R       D  A CPFHDEKTPS   + +K 
Sbjct: 3   RIAETELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVALCPFHDEKTPSCVISPAKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115
            Y+CF C   G  L +L      S  ++V+RL A  G     VPL          E  + 
Sbjct: 58  LYHCFGCDAGGSVLDWLMHSENLSLRKAVERLRAELGENPALVPLVAQPDVFADDEAGRQ 117

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L   +E  T F+H +L NA  + L Y    R      +  F+ G+A     +L   L  
Sbjct: 118 AL---LERVTAFYHQTLLNAP-EALAYLEKRRLNYPELVAQFRPGFA---NRTLAYRLPP 170

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K   +   I A L   G    + ++ F   L+ P+    G++    GR + K +      
Sbjct: 171 KKLKDGAAIRARLQALGIMRESGHEHFTGCLVVPVADLHGRIREVYGRKIDKPQRGM--- 227

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
                      +LY     L      +  +     S  +IL E  +D +S   AG +NV 
Sbjct: 228 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGQRNVT 273

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ G        R  +     I       D        A+ L             ++   
Sbjct: 274 AAYGVNGFTDDHRRAFAQH-EIKQVLIAFDNDAAGNAAAVRLAAELAAMQIDTFRIVFPA 332

Query: 356 GEDPDSFIRC--YGKTAFEKLIVESLPLVD------MLWKRETENRSFNTPDERAELEI- 406
           G D + ++      +  F  L   + P+ D      M+        + +  D    +E  
Sbjct: 333 GMDANGYLCRVAEPEQEFGLLAGSAQPMRDAVTVPEMVVPETLPALAASPSDPGVIVERG 392

Query: 407 --------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452
                          ++          +     Q +       F   +   S   R    
Sbjct: 393 EAGEVTIGLGAQRWRVRGLAQVKPGAAVMKLSLQVLDRESGAAFADSLDLISARSRGGYV 452

Query: 453 NARHRDQKGPSQRLMQS-----------SLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
                +       + +S           +    + + + +  E A  L L+N P +    
Sbjct: 453 RQAATELGLAEDDVRRSLGKVLLALENLAPQPEETAPELTEAERAAALALLNDPDLSGRI 512

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +LA           L +   +    +       + Q     G   L+  +   + +  
Sbjct: 513 TDDLAACGVVGESTN-LLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMDAVLGLMPEEE 571

Query: 562 LW----------SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
                           E+N+        +   + +    L   + + E  IA   + G+ 
Sbjct: 572 RMQYSAMTGQSLFYLGESNLQHKILAIAEEEGVRQAAYALKLLQSDGELTIA---STGKD 628

Query: 612 EKTAILISILHEVH 625
           + T  L++  + V 
Sbjct: 629 DATGNLVTKQYRVK 642


>gi|300723779|ref|YP_003713086.1| DnaG primase-like [Xenorhabdus nematophila ATCC 19061]
 gi|297630303|emb|CBJ90957.1| DnaG primase-like [Xenorhabdus nematophila ATCC 19061]
          Length = 920

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 95/388 (24%), Positives = 151/388 (38%), Gaps = 36/388 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P   ++ L   +P+  +I Q    W +R  +         CPFH E+TPS     SK 
Sbjct: 3   RIPDAELQHLKAAVPLVTIIEQQGRQWFKRGKDMTV-----LCPFHQEQTPSMVITPSKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL--I 118
            Y+CF C   G  L ++    G S   +V+RL A+ G   P  +P +   E     +   
Sbjct: 58  LYHCFGCGAGGSVLDWVMKTEGLSLRHAVERLRAVLG-NNPSGEPLVAPAELAGEAVGQQ 116

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            L+    +F+HH+L  A + +  Y    R      +  FKLG+A     +L   L  K  
Sbjct: 117 ALLSRVVEFYHHTLLQAPEAQD-YLAKRRLNHPELVAQFKLGFA---NRTLGYRLPPKKV 172

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
                I   L   G      ++  R  L+ P+   +GQV    GR +S   S        
Sbjct: 173 KAGAEIRRRLQAAGVLRENGHEHLRGSLVIPVIDHQGQVHELYGRKISNDLSRGT----- 227

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
                  K+LY     L      +      ++S  +IL E  +D LS   +G +NV ++ 
Sbjct: 228 ------AKHLY-----LPGQHAGVWNAAALSASKTLILCESLIDALSFWVSGHRNVTAAY 276

Query: 299 GTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           G           ++     +I++ FD D+ G  AA   + L       G     V     
Sbjct: 277 GVNGVTDDHWQAFEQHGIQQILIAFDNDNAGNDAA---VKLAAALTAKGIAPLRVEFPPD 333

Query: 357 EDPDSFIRC--YGKTAFEKLIVESLPLV 382
            D +S++      +TAF  LI  ++P+ 
Sbjct: 334 RDANSYLCQVAEPETAFSLLIEGAVPMQ 361


>gi|330723943|gb|AEC46313.1| DNA primase [Mycoplasma hyorhinis MCLD]
          Length = 595

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 131/643 (20%), Positives = 255/643 (39%), Gaps = 73/643 (11%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I+ ++  + I  +I  +++  ++       D+   CPFH++ +PS   + SK  + CFSC
Sbjct: 6   IETIINQVNIFEVISNFINLSKKGN-----DFLGLCPFHEDSSPSLSVSVSKKIFKCFSC 60

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVAT 125
           +V G+   F+  L   + +++++       + L        +++    +   ++ +E A 
Sbjct: 61  NVGGNVYYFVKRLNNWNDLKTLEYFEKTFNLNLNSSLIAKNVKEFTPNEEKALKALEDAF 120

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
            FF   LK      L  YL +R +    I+ F LGY P S   ++E L +KG  E  ++ 
Sbjct: 121 LFFSLELKQNSPDYLKKYLLQRNLTKEIIDYFSLGYCPKS--GIKEKLLKKGHDEAILLN 178

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPETILFHK 244
             LL   + +       ++R+IF I++S GQ++ F  R  L      KY+NS    LF K
Sbjct: 179 YSLLSFENKTDIF----QDRIIFTIKNSEGQIVGFSARKILDSTLGPKYINSSANSLFVK 234

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            + LYN+  A+ Y           N+S  +I+ EG+MDV++  +  V+NVV+ +GTALT+
Sbjct: 235 SQILYNYSNAIQYA----------NASKTLIICEGFMDVIAFFRDEVKNVVALMGTALTK 284

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             +  L      I+L  D D  G+ A+ K+I L    L     +  +     +DPD +  
Sbjct: 285 DHISYLKPF--EIILILDSDQAGIDASLKSISL---LLENKISIKVLKRKLEKDPDQYFV 339

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNT--------PDERAELEIHLKNCINHIK 416
             GK + +  +  +   +  ++K+ +E    N          D    L+ +  N  N+  
Sbjct: 340 TNGKGSLKLELDNTQDAIHWVYKKLSEKIVKNDLKTLDTFIYDFSKYLQHYSINFQNNFI 399

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL--MQSSLVKG 474
           +Q  + +       +L   +      +         N          + L       +  
Sbjct: 400 EQAEKDFSIPKASWKLVNRWSSNSRYYYPETTTNNDNLSLIPTSNDLETLGVEPKHPLFQ 459

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K     S  E  LL +L++ P  L+       + ++  +  Q  +S L +          
Sbjct: 460 KKVFNISQSEKILLFSLLHKPEFLKII--TFFNYQFQTSIFQSYYSELVATNFN------ 511

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                          L  + +   +    S      +    +     + +  +   + +Q
Sbjct: 512 ---------------LDVIKKVYYNLNASSTIKGKTLK--IETSADKIEMLIKTLNIEKQ 554

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           K++I      +  K  +E          E+   I + + + ++
Sbjct: 555 KQKIATLSKLLKNKTSSE---------QEIKRSISETQKENSL 588


>gi|310766359|gb|ADP11309.1| Dnag primase-like protein [Erwinia sp. Ejp617]
          Length = 900

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 106/609 (17%), Positives = 187/609 (30%), Gaps = 76/609 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
                 ++ L   + ++ ++  Q     +R       D  A CPFHDEKTPS   + +K 
Sbjct: 3   RIAETELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVALCPFHDEKTPSCVISPAKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE-----KIQT 115
            Y+CF C   G  L +L      S  ++V+RL A  G   P V P +   E       + 
Sbjct: 58  LYHCFGCDAGGSVLDWLMHSENLSLRKAVERLRAELG-DNPAVAPLVTAAEPDVFADDEA 116

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
               L+E  T F+H +L NA  + L Y    R      +  F+ G+A     +L   L  
Sbjct: 117 GRQALLERVTAFYHQTLLNAP-EALAYLEKRRLNHPELVAQFRPGFA---NRTLAYRLPP 172

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K   +   I + L   G    + ++ F   L+ P+    GQ+    GR + K +      
Sbjct: 173 KKLKDGAAIRSRLQALGIMRESGHEHFTGCLVVPVADLHGQIREVYGRKIDKPQRGM--- 229

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
                      +LY     L      +  +     S  +IL E  +D +S   AG +NV 
Sbjct: 230 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGQRNVT 275

Query: 296 SSLGTA-LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           ++ G    T    R   +   + VL     D        A+ L             ++  
Sbjct: 276 AAYGVHGFTGDHRRAFAQHEIKQVLIA--FDNDAAGNAAAVRLAAELAAMQIDAFRIVFP 333

Query: 355 RGEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI------ 406
           +G D + ++      +  F  L+  + P+ D +                           
Sbjct: 334 QGMDANGYLCRVAEPEREFGLLVESAQPMRDAVRVETPVAEPEPETLPALAASPSDPGVV 393

Query: 407 ------------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
                              ++          +     Q +       F   +   S   R
Sbjct: 394 VERGEAGEVLIGLGAQRWRVRGLAQVKPGAAVMKLNVQVLDRESGAAFADSLDLISARSR 453

Query: 449 YWKKNARHRDQKGPSQRLMQS-------------SLVKGKLSKKPSLREAALLLTLINHP 495
                    +       L +S                  + + + + +E A  L L+N P
Sbjct: 454 SGYVRQAAAELGLAEDDLRRSLGKVLLALENLAAQPQPEENAPQLTEQERAEALALLNDP 513

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            +      +LA           L +   +    +       + Q     G   L+  +  
Sbjct: 514 RLGSRITDDLAACGVVGES-GNLLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMDAVLG 572

Query: 556 QVRDAGLWS 564
            + +     
Sbjct: 573 LMPEEERMQ 581


>gi|290580719|ref|YP_003485111.1| putative DNA primase [Streptococcus mutans NN2025]
 gi|254997618|dbj|BAH88219.1| putative DNA primase [Streptococcus mutans NN2025]
          Length = 465

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 109/500 (21%), Positives = 199/500 (39%), Gaps = 42/500 (8%)

Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193
               +    YL ERG+    I  FK+G AP+    L + + +K       I    L +  
Sbjct: 4   TKVGETARQYLYERGLTDELITYFKIGLAPNEYDYLYQAMLKKYDE--DTIINSGLFNLS 61

Query: 194 NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK----YLNSPETILFHKGKNLY 249
           +S + YD FRNR++FP+    G +I F GR  ++ ++ K    Y N+  TI+F+K   LY
Sbjct: 62  DSNSIYDAFRNRIMFPLTDEFGHIIGFSGRIWTEEDTSKKLAKYKNTRSTIIFNKSYELY 121

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309
           +                       + L+EG+MDV++  +AG+ N V+S+GTALT   ++ 
Sbjct: 122 HLDK----------AKAAAKKEHELYLMEGFMDVIAAYRAGIPNAVASMGTALTSEHVKH 171

Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
           L K + +++L +DGD  G  A  K++DL+         V  V +    DPD FI+   + 
Sbjct: 172 LRKFTKKVILTYDGDKAGQNAIAKSLDLL-----SNMAVEIVRIPGQMDPDEFIKENSEE 226

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             EKL+ ++       W    +  + +      +    +   I        +  Y   + 
Sbjct: 227 ELEKLLKQARISSAEFWIEHLKPENIDNLQAEIDYVEKIAKVIAASPSITAQNTYINKVA 286

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           + L       + +     R   ++     +    Q L+   L   K     +  E+ L  
Sbjct: 287 EFLPDFDYLQVEQAVNNERLQTRSQISEQESANQQVLID--LPVTKQLTALTKAESQLFH 344

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            L++H  +L E     A  ++   ELQ+L+  +     E   +   ++  +L E  +  L
Sbjct: 345 RLLHHDYLLNEFRNR-AHFKFTTPELQELYQ-ILKTNGEINAYDLSQLSDQLQETYYRVL 402

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            + L              E    ++RQ   Q     +R     ++  +  K I + +  G
Sbjct: 403 EENL------------PEEIAEDEIRQIEDQIDKCLQR-----QEMRKQSKAIRESSNHG 445

Query: 610 EAEKTAILISILHEVHIQIH 629
           + +     ++ L      + 
Sbjct: 446 DVDTAVEGLAALIAQKRNME 465


>gi|304373197|ref|YP_003856406.1| DNA primase [Mycoplasma hyorhinis HUB-1]
 gi|304309388|gb|ADM21868.1| DNA primase [Mycoplasma hyorhinis HUB-1]
          Length = 595

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 131/643 (20%), Positives = 255/643 (39%), Gaps = 73/643 (11%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I+ ++  + I  +I  +++  ++       D+   CPFH++ +PS   + SK  + CFSC
Sbjct: 6   IETIINQVNIFEVISNFINLSKKGN-----DFLGLCPFHEDSSPSLSVSVSKKIFKCFSC 60

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVAT 125
           +V G+   F+  L   + +++++       + L        +++    +   ++ +E A 
Sbjct: 61  NVGGNVYYFVKRLNNWNDLKTLEYFERTFNLNLNSSLIAKNVKEFTPNEEKALKALEDAF 120

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
            FF   LK      L  YL +R +    I+ F LGY P S   ++E L +KG  E  ++ 
Sbjct: 121 LFFSLELKQNSPDYLKKYLLQRNLTKEIIDYFSLGYCPKS--GIKEKLLKKGHDEAILLN 178

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPETILFHK 244
             LL   + +       ++R+IF I++S GQ++ F  R  L      KY+NS    LF K
Sbjct: 179 YSLLSFENKTDIF----QDRIIFTIKNSEGQIVGFSARKILDSTLGPKYINSSANSLFVK 234

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            + LYN+  A+ Y           N+S  +I+ EG+MDV++  +  V+NVV+ +GTALT+
Sbjct: 235 SQILYNYSNAIQYA----------NASKTLIICEGFMDVIAFFRDEVKNVVALMGTALTK 284

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             +  L      I+L  D D  G+ A+ K+I L    L     +  +     +DPD +  
Sbjct: 285 DHISYLKPF--EIILILDSDQAGIDASLKSISL---LLENKISIKVLKRKLEKDPDQYFV 339

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNT--------PDERAELEIHLKNCINHIK 416
             GK + +  +  +   +  ++K+ +E    N          D    L+ +  N  N+  
Sbjct: 340 TNGKGSLKLELDNTQDAIHWVYKKLSEKIVKNDLKTLDTFIYDFSKYLQHYSINFQNNFI 399

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL--MQSSLVKG 474
           +Q  + +       +L   +      +         N          + L       +  
Sbjct: 400 EQAEKDFSIPKASWKLVNRWSSNSRYYYPETTTNNDNLSLIPTSNDLETLGVEPKHPLFQ 459

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K     S  E  LL +L++ P  L+       + ++  +  Q  +S L +          
Sbjct: 460 KKVFNISQSEKILLFSLLHKPEFLKII--TFFNYQFQTSIFQSYYSELVATNFN------ 511

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                          L  + +   +    S      +    +     + +  +   + +Q
Sbjct: 512 ---------------LDVIKKVYYNLNASSTIKGKTLK--IETSADKIEMLIKTLNIEKQ 554

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           K++I      +  K  +E          E+   I + + + ++
Sbjct: 555 KQKIATLSKLLKNKTSSE---------QEIKRSISETQKENSL 588


>gi|284799937|ref|ZP_06390437.1| DNA primase [Neisseria subflava NJ9703]
 gi|284796405|gb|EFC51752.1| DNA primase [Neisseria subflava NJ9703]
          Length = 459

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 134/490 (27%), Positives = 225/490 (45%), Gaps = 35/490 (7%)

Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195
            +     YLD+RG+ +  I  + LGYAPD    L +    + +    +++ G++ID    
Sbjct: 3   FNPVAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--QPYPNTALVDTGMVIDN--E 58

Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255
              YDRFR+R++FPIR+ RGQVI FGGR L      KYLNSP+T LF KGKNLY  +   
Sbjct: 59  GKHYDRFRHRVMFPIRNPRGQVIGFGGRVL-DDSKPKYLNSPDTPLFDKGKNLYGLYEGR 117

Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315
             ++++ R          I++VEGYMDV++L Q GV   V++LGTA T   +++L + + 
Sbjct: 118 AAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVAALGTATTAEHVKILMRQAD 167

Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK-L 374
            I  CFDGD  G +AA++A++  L  L     ++F+ L    DPDS+IR YGK  FE  L
Sbjct: 168 SIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRAYGKAQFEDAL 227

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           + +S PL +  W+  ++  + NT + +AEL       +  I    L Y   Q + + +  
Sbjct: 228 LNQSKPLSEYFWEHLSDGLNLNTQEGKAELVKTSSPLLAQITAPALGYLLKQKLSELVGI 287

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
                           K++ + +  K P   + Q +++        +L +  +   LIN 
Sbjct: 288 DPDNLAQLLGQEA--PKRHVKQKSYKLPPISVKQPTML--------TLVQRQIRSLLIN- 336

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
           PA       +L D    + +   L +   +           ++ + +    + E + Q+ 
Sbjct: 337 PAWASYI--DLPDYLALSGDFACLANLAETIKHHDTTPATAQVFEYMRGSPYEETVNQIF 394

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ-IAQVTAKGEAEK 613
                +       E +    + G ++ L   K       Q E ++++ I     + E   
Sbjct: 395 LSTLHSEEMEGDNEEDCESFQIGMKKLLNELK-----YSQIETLKQKSIQTGLTENEKRL 449

Query: 614 TAILISILHE 623
              L++    
Sbjct: 450 LLSLLTAKQN 459


>gi|312142472|ref|YP_003993918.1| DNA primase catalytic core domain [Halanaerobium sp. 'sapolanicus']
 gi|311903123|gb|ADQ13564.1| DNA primase catalytic core domain [Halanaerobium sp. 'sapolanicus']
          Length = 1042

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 105/497 (21%), Positives = 192/497 (38%), Gaps = 50/497 (10%)

Query: 8   IKDLLIHIPISNLIGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPS-----FHCNDSKGF 61
           IK++  +  I  +I + V    +  TN   G       FH  K  S        N  KG 
Sbjct: 10  IKEISNNANIKEIIEEDVGSLKKESTNNYSG-------FHKNKHASESKTSLKVNTDKGV 62

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKIQTDL 117
           YYCF+C   G+ +++L A     F+E+ Q LAA   V +         KI+K  + +  +
Sbjct: 63  YYCFNCGEGGNAITWLMANRSMGFLEAAQYLAARYDVDIGDLSEEELEKIKKFHQEKEMI 122

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
             +  +A + ++  L+      L       GI     +   +GYAP     L   L +KG
Sbjct: 123 YEIFTIAAEIYNSQLREEHYHLLKNKW---GITKETADSINIGYAPSDGNFLLRKLLKKG 179

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
           +S++ + + GL I        YD F+ R+IFP      +V+ F GR        K+    
Sbjct: 180 YSQKDLKKTGLFIKK------YDFFQGRIIFP-YQKNHKVVFFIGRKTKHTPDKKWERGK 232

Query: 238 ETILF-HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
              L  H  K  Y      N     +      +++  +I+ EG  D ++  QAG    +S
Sbjct: 233 YKKLLTHSDKRKYISSVVKNEH---LFGVDSLSNTEALIITEGITDAITTIQAGYS-CIS 288

Query: 297 SLGTALTEYQLRLLWKLSPRI--VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
            +     +   + L  ++ +   +   + ++        A++        G++V  V L 
Sbjct: 289 PVTVQFRKKDYKKLESIAEKAKKIYIVNDNEESGAGRKGALETARYLHKKGHKVYIVELP 348

Query: 355 RGE-----DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
           + E     D   + + + K  FEKL+ ES  L+D+  K+  +     + DE+      + 
Sbjct: 349 KPEEVSKIDLADYWKDHNKDDFEKLLRESNNLMDLGIKKIKQ----ASYDEKITAAESVY 404

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
                + D   +  Y + I++      +          R       ++ +K  +   ++S
Sbjct: 405 PLFAGLGD-IEKDRYIKKIKEAFGNDVR------IKTIRGKINEVINKKEKKENTNDIKS 457

Query: 470 SLVKGKLSKKPSLREAA 486
                  S  P +RE++
Sbjct: 458 EESTSNTSPIPRIRESS 474


>gi|169836355|ref|ZP_02869543.1| DNA primase, putative [candidate division TM7 single-cell isolate
           TM7a]
          Length = 153

 Score =  156 bits (395), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 6/125 (4%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           +D  +++   + I ++IG+Y++  R   N     +    PF  EKTPSF  +  K  ++ 
Sbjct: 27  QDAKEEVRGRLAIEDIIGEYIELKRAGRN-----FKGLSPFTAEKTPSFFVSPEKNIWHD 81

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRLIEV 123
           FS +  GD  SF+  + G  F E+++ LA  A V L      K     K +  L  + + 
Sbjct: 82  FSSNKGGDIFSFIMEVEGLGFREALELLARKANVDLSLYKTDKHRDIAKKKQRLFEINKW 141

Query: 124 ATDFF 128
               F
Sbjct: 142 VCKIF 146


>gi|294669704|ref|ZP_06734771.1| hypothetical protein NEIELOOT_01605 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308617|gb|EFE49860.1| hypothetical protein NEIELOOT_01605 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 433

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 122/452 (26%), Positives = 203/452 (44%), Gaps = 35/452 (7%)

Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218
           +GYAPD    L +    + +    + E G +I  +     YDRFR+R++FPIR  +G+VI
Sbjct: 1   MGYAPDGWQPLAQVF--QPYPNNALTECGQVIHNEEQNRYYDRFRHRIMFPIRDQQGRVI 58

Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278
            FGGR L      KYLNSP+T LF KG+NLY  + A N ++ + R          I++VE
Sbjct: 59  GFGGRVL-DDSKPKYLNSPDTPLFDKGRNLYGLYEARNAVRDAGR----------ILVVE 107

Query: 279 GYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLV 338
           GYMDV++L Q G+   V+SLGT+ T   +++L + S  I  CFDGD  G +AA++A++  
Sbjct: 108 GYMDVVALAQFGIPYAVASLGTSTTGEHIKILMRQSDEIYFCFDGDAAGRKAAWRALENA 167

Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNT 397
           L  L  G  +NF+ L    DPDS+IR +GKT FE  LI +S PL +  W+  ++  +  T
Sbjct: 168 LPQLKDGKSLNFLFLPPEHDPDSYIRAHGKTQFEDALIHQSKPLSEYFWQALSDGLNLAT 227

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            + ++ L       +  I    L +   Q + + +                  +  A+  
Sbjct: 228 QEGKSRLLKTAAPLLAQITAPALGFLLKQRLAELVGIDPADLAVLLGQETPPRRVQAKSY 287

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYDNNELQ 516
                ++R               +L +  +  +L+++PA        E   +  D   L 
Sbjct: 288 KLPRETRR----------QPAMLTLAQRQI-RSLLSNPAWAVHVRLPEYVVLEGDTACLA 336

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIVD- 573
            +  F+ S            I +       G +L+Q+     + D        E    D 
Sbjct: 337 NIADFILSGST---PPDHARIWEHFRGTDTGNVLQQIYQAGGLDDGEDGGEENETAFSDG 393

Query: 574 ---VRQGYQQALALYKRFRLLSRQKEEIEKQI 602
              + + ++ A     + + +     + EK++
Sbjct: 394 MGKLIKEFRHAQLEALKRKTVEGGLNDAEKKL 425


>gi|257453788|ref|ZP_05619066.1| DNA primase [Enhydrobacter aerosaccus SK60]
 gi|257448715|gb|EEV23680.1| DNA primase [Enhydrobacter aerosaccus SK60]
          Length = 739

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 6/103 (5%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+     I  ++ +  I  +IG++V+  R        ++  CCPFH EKTPSF  N  KG
Sbjct: 1   MS-NNAIIDQIIANADIVKIIGKHVELKRSGN-----EFKGCCPFHGEKTPSFFVNPQKG 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV 103
            Y CF C V G+ L+FL      +  E+++ L+   G+ LP  
Sbjct: 55  LYNCFGCGVAGNALTFLKEYENLTAGEALKELSRQTGIELPKE 97



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 132/557 (23%), Positives = 228/557 (40%), Gaps = 77/557 (13%)

Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159
           LP  D      +   + L  L+     F+ H L+     +  +YL +RG+  H IE F L
Sbjct: 188 LPFDDMGNNSPQDSSSSLYDLLTQICQFYQHQLQQNSFAQ--HYLLKRGLTPHTIEEFAL 245

Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219
           G+AP+    L E   Q    + + ++   L+    +   +D  RNR+IFPIR  +G+VI 
Sbjct: 246 GFAPNGWQHLEEAFPQ----DIEGLKILGLVRTSQNGRDFDLLRNRVIFPIRDQQGRVIG 301

Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279
           F GRTLS  E  KY+NS ++ +FHK   LY  F       K              ++VEG
Sbjct: 302 FAGRTLSDDEQPKYINSSDSPVFHKQAVLYGLFEGRKAKAKD------------WLVVEG 349

Query: 280 YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVL 339
           YMDV+SL QAGV   V+S+GTAL + Q+  L + +P + L FDGD  G +AA++A+++ L
Sbjct: 350 YMDVISLHQAGVYGAVASMGTALAQSQIERLLQFNPILTLSFDGDSAGQKAAWRAMEVGL 409

Query: 340 CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399
             L  G  ++F+ L    DPDS+++ +G  A  + I +++PL   L+   T     NTP+
Sbjct: 410 PALTDGKELHFLTLPDNHDPDSYVKAHGLLAMRQQIAQAVPLSAYLYSSLTRQYPTNTPE 469

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ------------------------- 434
            R+++   L      +      +   + I++++                           
Sbjct: 470 NRSKILQQLSALTQKLPKGSYGWLLREDIKNKMGLGRKNQARQAQDALLNFDSELTVQLH 529

Query: 435 -----LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL-- 487
                LFQ  +       R  +   R   Q+  +  + +      K +    L E     
Sbjct: 530 LQLCFLFQPELLGSLEDNRISQSVIRDIYQRSEAANVFKPRPPSTKPTAPIRLDENLTGD 589

Query: 488 ---LLTLINHPAILQEQYQE--LADIRYDNNELQKLWSFLFSDFVEQKYFL--------- 533
              +   ++ P   +   +   L      + EL KL +++ +     + F          
Sbjct: 590 TEGITHAMDTP--CKNYDESCCLTWQAIADEELLKLITWIQTIQSRLQDFDNPNWSTYER 647

Query: 534 ----PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                  I   L      +L+K   R  ++    +        D        L +     
Sbjct: 648 INAKAHFILAGLTSEQQNKLIKHWARFFKELSQRNI-------DDISDLVTELVVQLMLE 700

Query: 590 LLSRQKEEIEKQIAQVT 606
            L R+++ ++  +  ++
Sbjct: 701 TLQREQKTLKADLKALS 717


>gi|312793724|ref|YP_004026647.1| DnaB domain-containing protein helicase domain-containing protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180864|gb|ADQ41034.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 608

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 137/412 (33%), Gaps = 77/412 (18%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           +D IK +   I I + IG+Y+   +         Y A CPFH +K PSF    S+ F++C
Sbjct: 4   QDIIKAIKNKIDIVDYIGRYLSLQKEGN-----SYKAICPFHADKNPSFSIKPSEQFFHC 58

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C V GD ++F        F E+V+ LA   G+ +     +   ++K            
Sbjct: 59  FGCGVSGDVITFAMKYHNVDFKEAVKMLAEEIGLSIDDKQAENNTQDKK----------- 107

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
                                         ++            L  +   +G S + I 
Sbjct: 108 --------------------------LSLDQIVAYVEMCSQYAKLTNYFADRGISPDIIK 141

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
           +  L          YD   N +I PI    GQ++++  R L                  +
Sbjct: 142 KYKLG---------YDVENNTVILPIVQE-GQIVSYVRRNL-----------------DE 174

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            K  Y F      +       ++ +  + + + EG  D L++  A  Q  ++  G    +
Sbjct: 175 NKTRYEFPKGHKAI-PFNLDILKDDLQTNVFITEGIFDALTIEAAIGQPAIALNGCENQK 233

Query: 305 YQLRLL---WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
             L++L        +  + FD D+ G +AA +  D +         +     +  +D + 
Sbjct: 234 EFLQVLNQIKPKGKKFYILFDNDEAGCKAAKQLFDKMKNQYE--VAICKWEGAPYKDINE 291

Query: 362 FIRCYGKTAFEKLIVE--SLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           F +         L+ +  +      L     +   F   ++   +    K  
Sbjct: 292 FWQNSQSEVINFLLWQLKAAFYPYALINFAAQYVDFIKSEKFKAISTGFKQL 343


>gi|84685252|ref|ZP_01013151.1| DNA primase (DnaG) [Maritimibacter alkaliphilus HTCC2654]
 gi|84666984|gb|EAQ13455.1| DNA primase (DnaG) [Rhodobacterales bacterium HTCC2654]
          Length = 352

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/128 (41%), Positives = 80/128 (62%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M+ P  ++  L  +I ++++  ++V WD RK+N  KGDYWA CPFH+E T SFH +D KG
Sbjct: 1   MSLPPGYLDRLRDNISLTDVTSRWVRWDMRKSNPEKGDYWAPCPFHEETTASFHVDDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           FYYCF CH KGD +SFL    G SF+++V++LA I G+   +     E       +L++L
Sbjct: 61  FYYCFGCHAKGDVVSFLKEKRGISFMQAVRQLAFICGMDDELASNDDESHSAEPLNLLQL 120

Query: 121 IEVATDFF 128
            ++  + F
Sbjct: 121 KDLIVENF 128


>gi|283479896|emb|CAY75812.1| DNA primase [Erwinia pyrifoliae DSM 12163]
          Length = 928

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 102/608 (16%), Positives = 180/608 (29%), Gaps = 74/608 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P   ++ L   + ++ ++  Q     +R       D    CPFHDEKTPS   + +K 
Sbjct: 3   RIPEAELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVXLCPFHDEKTPSCVISPAKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115
            Y+CF C   G  L +L      S  ++V+RL A  G     VPL          +    
Sbjct: 58  LYHCFGCDAGGSVLDWLMHSEXLSLRKAVERLRAELGENPALVPLVAAAEPDVFADDEAG 117

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
               L+E  T F+H +L NA  + L Y    R      +  F+ G+A     +L   L  
Sbjct: 118 R-QALLERVTAFYHQTLLNAP-EALAYLEKRRLNXPXLVAQFRPGFA---NRTLAYRLPP 172

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K   +   I A L   G    + ++ F   L+ P+    G++    GR + K +      
Sbjct: 173 KKLKDGAAIRARLQALGIMRESGHEHFTGXLVVPVADLHGRIREVYGRKIDKPQRGM--- 229

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
                      +LY     L      +  +     S  +IL E  +D +S   AG +NV 
Sbjct: 230 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGQRNVT 275

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ G        R  +       +     D        A+ L             ++  +
Sbjct: 276 AAYGVXGFTGDHRHAFAQHGTKQVLI-AFDNDAAGNAAAVRLAAELAAMQIDAFRIVFPQ 334

Query: 356 GEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI------- 406
           G D + ++      +  F  L+  + P+ D +                            
Sbjct: 335 GMDANGWLCRVAEPEREFGLLVESAQPMRDAVRVETPVAEPEPETLPALAASPSDPGVIV 394

Query: 407 -----------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
                             ++          +     Q +       F   +   S   R 
Sbjct: 395 ERGEAGEVTIGLGAQRWRVRGLAQVKPGAAVMKLNVQVLXRESGAAFADSLDLISARSRS 454

Query: 450 WKKNARHRDQKGPSQRLMQS-------------SLVKGKLSKKPSLREAALLLTLINHPA 496
                   +       L +S                  +   + +  E A  L L+N P 
Sbjct: 455 GYVRQAAAELGLAEDDLRRSLGKVLLALENLAAQPEAQESGPELTEAERAEALALLNDPR 514

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           +      +LA           L +   +    +       + Q     G   L+  +   
Sbjct: 515 LSGRITDDLAACGVVGES-GNLLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMXAVLGL 573

Query: 557 VRDAGLWS 564
           + +     
Sbjct: 574 MPEEERMQ 581


>gi|318040132|ref|ZP_07972088.1| DNA primase [Synechococcus sp. CB0101]
          Length = 280

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 119/299 (39%), Gaps = 63/299 (21%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                ++ +     + +L G   +  +        D+ A CP+HD++ PS   + ++   
Sbjct: 39  LTPTVLESVRERAQVMDLFGPS-ELKKAGR-----DFVARCPWHDDRHPSLTVSTTRNRV 92

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK-EKIQTDLIRLI 121
           +CF C    D + +L    G SF E+V  LA   GV +   DP+ +++ E+   +   L+
Sbjct: 93  HCFVCGKGTDAIGWLQDRQGLSFQEAVLELARRTGVSVAEGDPEAQERFEQEWRERRALM 152

Query: 122 EVATDF---FHHSL--KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
              T+    FH +L  +  +      YL  RGI +     ++LG+A              
Sbjct: 153 AKRTEQRTQFHQALVQQLEQGGDGADYLQARGISADTARAWQLGFAG------------- 199

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
                                       RL+ P+  + GQ + F GR  +  +  KY NS
Sbjct: 200 ---------------------------GRLVIPLNDASGQTVGFCGRA-TGNQEPKYRNS 231

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           P  +LF +   ++    A + ++K              +LVEG +DV+ L QAG  N V
Sbjct: 232 PNDLLFQRNGLVFGLDQAADAVRK----------EGTALLVEGPLDVIQLHQAGFTNAV 280


>gi|317134068|ref|YP_004089979.1| DNA primase catalytic core domain [Ruminococcus albus 7]
 gi|315450530|gb|ADU24093.1| DNA primase catalytic core domain [Ruminococcus albus 7]
          Length = 389

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 105/402 (26%), Positives = 170/402 (42%), Gaps = 40/402 (9%)

Query: 16  PISNLIGQYVDWDRRKTNAVKGDYWACCPFH---DEKTPSFHCNDSKGFYYCFSCHVKGD 72
            I  +I               G Y   CPF           +  + +  Y+CF+C   GD
Sbjct: 5   SILKIISVKTSLKHIGN----GLYRGKCPFCGAIQ-----LYVFEKENCYHCFNCGKNGD 55

Query: 73  HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSL 132
              F        + ++V        V        I  K +       L   A  FF   L
Sbjct: 56  QARF-MNENKIHYKDAV---GKKNHV--------IHTKPRDLKTFYELNYEAAKFFFERL 103

Query: 133 KNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191
            + ++     Y +++RG+ +  I  F++GYA  +  SL+EH+   G++ E+++++ L + 
Sbjct: 104 FSKKENVCLDYLINKRGLTTETICNFRMGYADGNFTSLKEHMLGLGYTIEQLLQSSL-VT 162

Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNF 251
              +    D F NR IFP     G +I FGGR L    + KYLN+  T  + K   L++ 
Sbjct: 163 VSKNDEIIDFFNNRAIFPFIDINGNIIGFGGRKLDGDNNFKYLNTKNTPCYTKNNFLFSL 222

Query: 252 FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLW 311
             A+  + K              IL EG +DV+S+ QAG +  V+S GTALT  Q  LL 
Sbjct: 223 NYAVKNISK----------GETPILCEGNLDVISMHQAGFRTAVASCGTALTTKQALLLK 272

Query: 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371
           + S  I++C+D DD G+ A  KAID+       G  V  + +   +DPD FI+ +G   F
Sbjct: 273 RYSDEIIICYDNDDAGIAATEKAIDI---LESVGFTVYVISIRDAKDPDEFIKKFGAKQF 329

Query: 372 EKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
            +LI       +    ++ ++       D ++     +    
Sbjct: 330 YQLIRNDLKNSIFYRIEQLSQKYDLTDLDAQSYFIKDVTELS 371


>gi|312174393|emb|CBX82640.1| DnaG primase-like protein [Erwinia amylovora ATCC BAA-2158]
          Length = 1011

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 73/392 (18%), Positives = 131/392 (33%), Gaps = 27/392 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P+  +  L   + ++ L   Q     ++       D    CPFH E+TPS   +  K 
Sbjct: 3   RIPQKELDQLKRRVSLAALAESQGHKLRKQGR-----DLVLLCPFHQEQTPSCVISPEKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++CF C   G  + ++    G S   +V RL A AG                +  L  L
Sbjct: 58  LWHCFGCGAAGSVVDWMMKTEGFSLPRAVLRLRAFAGSGSSSAAAVPVPSPSARQTLTDL 117

Query: 121 IE-------VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
            +         TD++HH+L N+ +                              +     
Sbjct: 118 NDDGQALLRQVTDWYHHNLLNSPEALAWLEKRGLNHPGLVSHFRLGFAGAHGVAAALPSP 177

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             K     +     L +  +++   + R    +     +  G   A  GR L        
Sbjct: 178 HGKEGKALRSRLTALGVVRESTRQDHFRGCLVVPVTGWAESGN-AAQRGRVLQLYGRRTL 236

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            +S         K+LY     L    + +  +    +SS  IL E  +D ++   AG +N
Sbjct: 237 TDSQIKKG--SAKHLY-----LPAPLRGVWNEQALAASSEAILCEALIDAMTFWCAGYRN 289

Query: 294 VVSSLG-TALTEYQLRLLW-KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
            +++ G    T   L  L      R+++ +D D+ G R A             G     V
Sbjct: 290 AIAAFGVNGFTADHLAALRCHGVKRVLIAYDRDEAGDRGAEVVA---SELQQSGIEAWRV 346

Query: 352 LLSRGEDPDSF-IRCYGKTAFEKLIVESLPLV 382
              +G D +++ ++     +   L +ES   +
Sbjct: 347 RFPQGLDANAYALKSGNPESALALALESASRM 378


>gi|42869|emb|CAA23636.1| unnamed protein product [Escherichia coli]
          Length = 81

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 2  NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            PR FI DLL    I +LI   V   ++  N     + ACCPFH+EKTPSF  N  K F
Sbjct: 4  RIPRVFINDLLARTDIVDLINARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58

Query: 62 YYCFSCHVKGDHLSFLSALLGCS 84
          Y+CF C   G+ + FL       
Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLE 81


>gi|310766354|gb|ADP11304.1| Dnag primase-like protein [Erwinia sp. Ejp617]
          Length = 947

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 83/389 (21%), Positives = 139/389 (35%), Gaps = 34/389 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
                 ++ L   + ++ ++  Q     +R       D  A CPFHDEKTPS   + +K 
Sbjct: 3   RIAETELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVALCPFHDEKTPSCVISPAKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVVDPKIEKKEKIQTD 116
            Y+CF C   G  L +L      S   +V+RL A  G    V   V   + +     +  
Sbjct: 58  LYHCFGCDAGGSVLDWLMQSENLSLRRAVERLRAELGDNPAVTPLVATAEPDVFADDEAG 117

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
              L+E  T F+H +L NA  + + Y    R      +  F+LG+A     +L   L  K
Sbjct: 118 RQALLERVTAFYHQTLLNAP-EAIAYLEKRRLNHPDLVAQFRLGFA---NRTLAYRLPPK 173

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
                  I A L   G    + ++ F   L+ P+    GQ+    GR + K +       
Sbjct: 174 KLKGGAAIRARLQALGIMRESGHEHFTGCLVVPVADLHGQIREVYGRKIDKPQRGM---- 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
                     +LY     L      +  +     S+ +IL E  +D +S   A  +NV +
Sbjct: 230 --------PAHLY-----LPGQHGGVWNEQALIGSTSVILCESLIDAMSFWVARQRNVTA 276

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           + G        R  +       +     D        A+ L    +        ++   G
Sbjct: 277 AYGVNGFTDDHRRAFAQHGTKQVLI-AFDNDAAGNAAAVRLAAELVQMQIDTFRIVFPAG 335

Query: 357 EDPDSFIRC--YGKTAFEKLIVESLPLVD 383
            D + ++      +  F  L   + P+ D
Sbjct: 336 MDANGYLCRVAEPEREFGLLAGSAQPMRD 364


>gi|310768309|gb|ADP13259.1| Dnag primase-like protein [Erwinia sp. Ejp617]
          Length = 390

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 83/389 (21%), Positives = 139/389 (35%), Gaps = 34/389 (8%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
                 ++ L   + ++ ++  Q     +R       D  A CPFHDEKTPS   + +K 
Sbjct: 3   RIAETELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVALCPFHDEKTPSCVISPAKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVVDPKIEKKEKIQTD 116
            Y+CF C   G  L +L      S   +V+RL A  G    V   V   + +     +  
Sbjct: 58  LYHCFGCDAGGSVLDWLMQSENLSLRRAVERLRAELGDNPAVTPLVATAEPDVFADDEAG 117

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
              L+E  T F+H +L NA  + + Y    R      +  F+LG+A     +L   L  K
Sbjct: 118 RQALLERVTAFYHQTLLNAP-EAIAYLEKRRLNHPDLVAQFRLGFA---NRTLAYRLPPK 173

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
                  I A L   G    + ++ F   L+ P+    GQ+    GR + K +       
Sbjct: 174 KLKGGAAIRARLQALGIMRESGHEHFTGCLVVPVADLHGQIREVYGRKIDKPQRGM---- 229

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
                     +LY     L      +  +     S+ +IL E  +D +S   A  +NV +
Sbjct: 230 --------PAHLY-----LPGQHGGVWNEQALIGSTSVILCESLIDAMSFWVARQRNVTA 276

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           + G        R  +       +     D        A+ L    +        ++   G
Sbjct: 277 AYGVNGFTDDHRRAFAQHGTKQVLI-AFDNDAAGNAAAVRLAAELVQMQIDTFRIVFPAG 335

Query: 357 EDPDSFIRC--YGKTAFEKLIVESLPLVD 383
            D + ++      +  F  L   + P+ D
Sbjct: 336 MDANGYLCRVAEPEREFGLLAGSAQPMRD 364


>gi|283477641|emb|CAY73557.1| DNA primase [Erwinia pyrifoliae DSM 12163]
          Length = 905

 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 115/674 (17%), Positives = 209/674 (31%), Gaps = 84/674 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
                 ++ L   + ++ ++  Q     +R       D    CPFHDEKTPS   + +K 
Sbjct: 14  RIAETELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVXLCPFHDEKTPSCVISPAKN 68

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115
            Y+CF C   G  L +L      S  ++V+RL A  G     VPL          E  + 
Sbjct: 69  LYHCFGCDAGGSVLDWLMHSEXLSLRKAVERLRAELGENPALVPLVAQPDVFADDEAGRQ 128

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L   +E  T F+H +L NA  + L Y    R      +  F+ G+A     +L   L  
Sbjct: 129 AL---LERVTAFYHQTLLNAP-EALAYLEKRRLNYPELVAQFRPGFA---NRTLAYRLPP 181

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K   +   I A L   G    + ++ F   L+ P+    G++    GR + K +      
Sbjct: 182 KKLKDGAAIRARLQALGIMRESGHEHFTGCLVVPVADLHGRIREVYGRKIDKPQRGM--- 238

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
                      +LY     L      +  +     S  +IL E  +D +S   AG +NV 
Sbjct: 239 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGQRNVT 284

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ G        R  +     I       D        A+ L             ++   
Sbjct: 285 AAYGVNGFTDDHRRAFAQH-EIKQVLIAFDNDAAGNAAAVRLAAELAAMQIDTFRIVFPA 343

Query: 356 GEDPDSFIRC--YGKTAFEKLIVESLPLVD------MLWKRETENRSFNTPDERAELEI- 406
           G D + ++      +  F  L   + P+ D      M+        + +  D    +E  
Sbjct: 344 GMDANGYLCRVAEPEQEFGLLAGSAQPMRDAVTVPEMVVPETLPALAASPSDPGVIVERG 403

Query: 407 --------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452
                          ++          +     Q +       F   +   S   R    
Sbjct: 404 EAGEVTIGLGAQRWRVRGLAQVKPGAAVMKLSLQVLDRESGAAFADSLDLISARSRGGYV 463

Query: 453 NARHRDQKGPSQRLMQS-----------SLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
                +       + +S           +    + + + +  E A  L L+N P +    
Sbjct: 464 RQAATELGLAEDDVRRSLGKVLLALENLAPQPEETAPELTEAERAAALALLNDPDLSGRI 523

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +LA           L +   +    +       + Q     G   L+  +   + +  
Sbjct: 524 TDDLAACGVVGESTN-LLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMDAVLGLMPEEE 582

Query: 562 LW----------SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
                           E+N+        +   + +    L   + + E  IA   + G+ 
Sbjct: 583 RMQYSAMTGQSLFYLGESNLQHKILAIAEEEGVRQAAYALKLLQSDGELTIA---STGKD 639

Query: 612 EKTAILISILHEVH 625
           + T  L++  + V 
Sbjct: 640 DATGNLVTKQYRVK 653


>gi|312621869|ref|YP_004023482.1| DnaB domain-containing protein helicase domain-containing protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202336|gb|ADQ45663.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 605

 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 71/412 (17%), Positives = 140/412 (33%), Gaps = 77/412 (18%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           ++ +K++   I I + IG+Y+  ++  +      Y A CPFH +K PSF+   S+ F++C
Sbjct: 4   QEIVKEIKSKIDIIDYIGRYLQLEKEGS-----SYKALCPFHPDKNPSFYIKPSEQFFHC 58

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C V GD ++F        F E+V+ LA   G+       +   +E+            
Sbjct: 59  FGCGVGGDVITFAMKYYNVDFKEAVKMLAEEIGLSTGSKQTEENTQEEK----------- 107

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
                  L   +         +    +       +  +   +Y +               
Sbjct: 108 -------LSIDQIIAYVETCHQYASLTSYFADRGIPTSLIDKYKM--------------- 145

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
                         +D   N ++ PI    GQ+I++  R L   +               
Sbjct: 146 -------------GFDVENNAIVLPIFQD-GQIISYVRRNLDDNKPR------------- 178

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
               Y F    N +       ++ +    + + EG  D L++  A  Q  ++  G    +
Sbjct: 179 ----YEFPKGSNAI-PFNVDLLKDDQQRNVFIAEGIFDALTIEAAIGQPAIALNGCENQK 233

Query: 305 YQLRLL---WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
             L++L      S +  + FD D+ G +AA +  D +         +     +  +D + 
Sbjct: 234 EFLQVLNLIKPKSKKFYILFDNDEAGSKAAKQLFDKMKNQYE--VAICRWEGAPYKDINE 291

Query: 362 FIRCYGKT--AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           F++        F K  +++      L     +   F   D+   +    K  
Sbjct: 292 FLQNSQDECIKFLKWQLKAAFYPYALINFAAQYVDFLKSDKFKAISTGFKQL 343


>gi|283479864|emb|CAY75780.1| DNA primase [Erwinia pyrifoliae DSM 12163]
 gi|283479873|emb|CAY75789.1| DNA primase [Erwinia pyrifoliae DSM 12163]
          Length = 894

 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 115/674 (17%), Positives = 209/674 (31%), Gaps = 84/674 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
                 ++ L   + ++ ++  Q     +R       D    CPFHDEKTPS   + +K 
Sbjct: 3   RIAETELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVXLCPFHDEKTPSCVISPAKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115
            Y+CF C   G  L +L      S  ++V+RL A  G     VPL          E  + 
Sbjct: 58  LYHCFGCDAGGSVLDWLMHSEXLSLRKAVERLRAELGENPALVPLVAQPDVFADDEAGRQ 117

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L   +E  T F+H +L NA  + L Y    R      +  F+ G+A     +L   L  
Sbjct: 118 AL---LERVTAFYHQTLLNAP-EALAYLEKRRLNYPELVAQFRPGFA---NRTLAYRLPP 170

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K   +   I A L   G    + ++ F   L+ P+    G++    GR + K +      
Sbjct: 171 KKLKDGAAIRARLQALGIMRESGHEHFTGCLVVPVADLHGRIREVYGRKIDKPQRGM--- 227

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
                      +LY     L      +  +     S  +IL E  +D +S   AG +NV 
Sbjct: 228 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGQRNVT 273

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ G        R  +     I       D        A+ L             ++   
Sbjct: 274 AAYGVNGFTDDHRRAFAQH-EIKQVLIAFDNDAAGNAAAVRLAAELAAMQIDTFRIVFPA 332

Query: 356 GEDPDSFIRC--YGKTAFEKLIVESLPLVD------MLWKRETENRSFNTPDERAELEI- 406
           G D + ++      +  F  L   + P+ D      M+        + +  D    +E  
Sbjct: 333 GMDANGYLCRVAEPEQEFGLLAGSAQPMRDAVTVPEMVVPETLPALAASPSDPGVIVERG 392

Query: 407 --------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452
                          ++          +     Q +       F   +   S   R    
Sbjct: 393 EAGEVTIGLGAQRWRVRGLAQVKPGAAVMKLSLQVLDRESGAAFADSLDLISARSRGGYV 452

Query: 453 NARHRDQKGPSQRLMQS-----------SLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
                +       + +S           +    + + + +  E A  L L+N P +    
Sbjct: 453 RQAATELGLAEDDVRRSLGKVLLALENLAPQPEETAPELTEAERAAALALLNDPDLSGRI 512

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +LA           L +   +    +       + Q     G   L+  +   + +  
Sbjct: 513 TDDLAACGVVGESTN-LLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMDAVLGLMPEEE 571

Query: 562 LW----------SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
                           E+N+        +   + +    L   + + E  IA   + G+ 
Sbjct: 572 RMQYSAMTGQSLFYLGESNLQHKILAIAEEEGVRQAAYALKLLQSDGELTIA---STGKD 628

Query: 612 EKTAILISILHEVH 625
           + T  L++  + V 
Sbjct: 629 DATGNLVTKQYRVK 642


>gi|312876878|ref|ZP_07736855.1| zinc finger CHC2-family protein [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796393|gb|EFR12745.1| zinc finger CHC2-family protein [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 607

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 127/376 (33%), Gaps = 75/376 (19%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           +  +K++   + I   IG+Y+   +         Y A CPFH +K PSF    S+ F++C
Sbjct: 2   QKIVKEIKNTLDIVEYIGRYLSLQKEGN-----SYKAVCPFHADKNPSFSIKPSEQFFHC 56

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C V GD ++F        F E+V+ LA   G+ +     K  ++   +  L       
Sbjct: 57  FGCGVSGDIITFAMKYHNVDFREAVKMLAEEIGLSI---GSKQTEENAQKEKL------- 106

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
                                         ++           SL      +G     + 
Sbjct: 107 ---------------------------SIDQIIAYIETCHQYTSLTSCFTDRGIPNWLVN 139

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
           +  L  D D +A     F++          GQ + +  R L+  E    +    T++   
Sbjct: 140 KYKLGFDVDKTAIVLPIFKD----------GQPVLYINRFLNDSERKYDVPKSATLI--- 186

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
               +N     + L             + + + EG  D L++  A  Q  ++  G    +
Sbjct: 187 ---PFNLDILRDDL------------QTNVFITEGIFDALTIEAAIGQPAIALNGCQNQK 231

Query: 305 YQLRLL---WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
             L++L        +  + FD D+ G +AA +  D +         +     +  +D + 
Sbjct: 232 EFLQVLEQIKPKGKKFYILFDNDEAGSKAAKQLFDKMKNQYE--VAICKWEAAPYKDINE 289

Query: 362 FIRCYGKTAFEKLIVE 377
           F +       + L  +
Sbjct: 290 FWQNSQDECIKFLKWQ 305


>gi|295111804|emb|CBL28554.1| DNA primase (bacterial type) [Synergistetes bacterium SGP1]
          Length = 82

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 5  RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           D ++ +   + I +++G  V   R        D+   CPFH+EKTPSFH +  +  Y+C
Sbjct: 3  NDDVQLVKEKLDIVDIVGDRVRLRRAGR-----DFVGLCPFHNEKTPSFHVSQERQNYHC 57

Query: 65 FSCHVKGDHLSFLSALLGCSFI 86
          F C   GD  +F+    G  F 
Sbjct: 58 FGCGKGGDVFTFVMETEGLDFP 79


>gi|283479905|emb|CAY75821.1| DNA primase [Erwinia pyrifoliae DSM 12163]
          Length = 920

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/390 (21%), Positives = 138/390 (35%), Gaps = 38/390 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P   ++ L   + ++ ++  Q     +R       D    CPFHDEKTPS   + +K 
Sbjct: 3   RIPEAELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVXLCPFHDEKTPSCVISPAKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115
            Y+CF C   G  L +L      S  ++V+RL A  G     VPL          E  + 
Sbjct: 58  LYHCFGCDAGGSVLDWLMHSEXLSLRKAVERLRAELGENPALVPLVAQPDVFADDEAGRQ 117

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            L   +E  T F+H +L NA  +   Y    R      +  F+ G+A     +L   L  
Sbjct: 118 AL---LERVTAFYHQTLLNAP-EAXAYLEKRRLNHPDLVAQFRPGFA---NRTLAYRLPP 170

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           K   +   I A L   G    + ++ F   L+ P+    G +    GR + K +      
Sbjct: 171 KKLKDGAAIRARLQALGIMRESGHEHFTGXLVVPVADLHGXIREVYGRKIDKPQRGM--- 227

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
                      +LY     L      +  +     S  +IL E  +D +S   AG +NV 
Sbjct: 228 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGQRNVT 273

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           ++ G        R  +     I       D        A+ L             ++  +
Sbjct: 274 AAXGVNGFTGDHRHAFARH-EIKQVLIAFDNDAAGNAAAVRLAXELAAMQIDAFRIVFPQ 332

Query: 356 GEDPDSFIRC--YGKTAFEKLIVESLPLVD 383
           G D + ++      +  F  L   + P+ D
Sbjct: 333 GMDANGYLCRVAEPEXEFGLLAGSAQPMRD 362


>gi|259909521|ref|YP_002649877.1| DnaG primase-like protein [Erwinia pyrifoliae Ep1/96]
 gi|224965143|emb|CAX56675.1| DnaG primase-like protein [Erwinia pyrifoliae Ep1/96]
          Length = 1021

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/393 (18%), Positives = 132/393 (33%), Gaps = 28/393 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P+  + +L   + ++ L   Q     ++  + V       CPFH EKTPS   +  K 
Sbjct: 3   RIPQKELDELKRSVSLAALAESQGHRLRQQGRDRVL-----LCPFHQEKTPSLVISPEKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C   G  + ++      S   +V RL   +G   P     +      +  L  L
Sbjct: 58  LYHCFGCGAAGSVVDWMMKTENFSLPRAVLRLPEFSG-QNPSSSAAVPASPPARQTLTDL 116

Query: 121 IEVATDF-------FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
            +            +HH+L N+ +                               L   +
Sbjct: 117 DDDGQALLGQVVNGYHHNLLNSPEALAWLEKRGLNHPELVSHFKLGFAGAHGVAGLLPSV 176

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             K     +     L +  + +   + R    +     +  G V A  GR L        
Sbjct: 177 SSKEGKRLRDRLTLLGVLRETTRQDHFRGCLVVPVVGWAESGHV-AQRGRVLQLYGRRTL 235

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            +S         ++LY     L      +  +    +SS +IL E  +D ++   AG +N
Sbjct: 236 TDSQIKKG--SARHLY-----LPAPLVGVWNEQALKASSEVILCEALIDAMTFWCAGYRN 288

Query: 294 VVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           V+++ G      ++   L W    R+++ FD D+ G R A             G     V
Sbjct: 289 VIAAFGANSFTADHLAALRWHGVKRVLIAFDRDEAGDRGAEAVA---GELQQAGIDAWRV 345

Query: 352 LLSRGEDPDSF-IRCYGKTAFEKLIVESLPLVD 383
               G D +++ ++     +   L +ES   + 
Sbjct: 346 RFPLGLDANAYALKSGNPESAFALALESASRMH 378


>gi|118197643|ref|YP_874036.1| DNA primase bacterial DnaG type [Thermus phage phiYS40]
 gi|116266334|gb|ABJ91417.1| DNA primase bacterial DnaG type [Thermus phage phiYS40]
          Length = 558

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 93/501 (18%), Positives = 182/501 (36%), Gaps = 48/501 (9%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +   +    +  +Y +   R      G Y+  CP H E TPSFH + + G +YCF C+  
Sbjct: 3   IEHRLDFFEIASKYTNLRHRG----GGKYYGLCPLHPEDTPSFHIDTNLGVFYCFGCNTG 58

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
           G+   F+S +      +  + L    G+ +       +K E       + +++ + +   
Sbjct: 59  GNIYQFISLVEHVPINQVGEILREKFGIDV--KTKGEKKYEDDHDLFSKFLKLLSKY--- 113

Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190
              N  +    + + + G+         + Y P+ R     +  ++    E++I  G+  
Sbjct: 114 ---NDTETVDDFNIKKLGLKPKYP----MFYVPNERLLDFTNEVKEKLDIERLITLGIFS 166

Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250
                     R+ +R+I PI S   +++   GR+L+     KYLN+     F K ++L  
Sbjct: 167 RD-EEGKLKFRYMSRIIIPIYSRVNRIVGLVGRSLNDMNLPKYLNTK----FSKTEHLPF 221

Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310
              A+   +K         + + I +VEG  D L+L +  +    S LG   T  Q+  L
Sbjct: 222 LNEAVKIAKKK--------NLNTIYIVEGPYDALALIERDIP-AASLLGIHFTVEQIN-L 271

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
                 +   FD DD G  A +     ++    P     FV     ED D  ++      
Sbjct: 272 LNSFSVVYFVFDNDDAGTSAYFNVAKTIIKTNRPSFSTMFVFYKDKEDIDEILKKKSFEE 331

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
           F K   ++  + D+       N   + P +  EL          I+++ ++         
Sbjct: 332 FIK-TADTKDVYDVFIDAHLRNIVKDLPIKNKEL----------IREELIKRLMKLFFNY 380

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL-MQSSLVKGKLSKKPSLREAALLL 489
           R  +     +       +Y       R     ++ L      ++         +E  LL 
Sbjct: 381 RENEHVYNLMLRICERSKYPFDALIRRVDYVINKGLSKAKKDIESVEIDYIPPKERKLLR 440

Query: 490 TLI-----NHPAILQEQYQEL 505
            ++     +H  ++  + + L
Sbjct: 441 GVLYLVNGHHDKLMTLKRELL 461


>gi|310766558|gb|ADP11508.1| DNA primase [Erwinia sp. Ejp617]
          Length = 1002

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 126/380 (33%), Gaps = 42/380 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P+  + +L   + ++ L   Q      +  + V       CPFH EKTPS   +  K 
Sbjct: 3   RIPQKELDELKRSVSLAALAESQGHRLRLQGRDRVL-----LCPFHQEKTPSCVISPDKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C   G  + ++    G S  ++V RL   AG         +      +  L  L
Sbjct: 58  LYHCFGCGAAGSVVDWMMKTEGFSLPKAVLRLREFAGHNPSSSAAAVPASPPARQTLTDL 117

Query: 121 IEVATDF-------FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
            +            +H +L N+ +                               L   +
Sbjct: 118 DDDGQALLGQVVNGYHRNLLNSPEALAWLEKRGLNHPELVSHFKLGFAGAHGVAGLLPSV 177

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS--------RGQVIAFGGRTL 225
             K     +     L +  + +    D FR  L+ P+           RG+V+   GR  
Sbjct: 178 SSKEGKRLRDRLTLLGVLRETTRQ--DHFRGCLVVPVVGWSESGNAAQRGRVLQLYGRRT 235

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
                +K             ++LY     L      +  +    +S+ IIL E  +D ++
Sbjct: 236 LSDNQIKK---------GSARHLY-----LPAPLAGVWNEQALKASADIILCEALIDAMT 281

Query: 286 LCQAGVQNVVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343
              AG +N +++ G      ++   L W    R+++ FD D+ G R A            
Sbjct: 282 FWCAGYRNAIAAFGANGFTADHLAALRWHGVKRVLIAFDRDEAGDRGAEAVA---GELQQ 338

Query: 344 PGNRVNFVLLSRGEDPDSFI 363
            G     V    G D +++ 
Sbjct: 339 AGIDAWRVRFPLGLDANAYA 358


>gi|262193947|ref|YP_003265156.1| DNA primase catalytic core domain protein [Haliangium ochraceum DSM
           14365]
 gi|262077294|gb|ACY13263.1| DNA primase catalytic core domain protein [Haliangium ochraceum DSM
           14365]
          Length = 1026

 Score =  150 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 87/465 (18%), Positives = 167/465 (35%), Gaps = 35/465 (7%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           R  I+ +     + +L+G+ +      +      +    P+  + TPS         +  
Sbjct: 7   RSLIEQVRERTDLVSLVGETISLAPSGSV-----FKGSSPWTRDATPSLVVWPHTRTWRD 61

Query: 65  FSCH--VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118
           FS    + GD   +L    G  F+ ++Q+LA  +GV +P  D         +   +  + 
Sbjct: 62  FSAGGSLGGDCFDWLQQRDGVPFLGALQQLAVRSGVEVPGGDAPALDAEIARIAERRRVE 121

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            L+  A  ++H  L      R  +Y +  G     ++   LG+A  +       +   G 
Sbjct: 122 ALLTAAASYYHSVL--PTKIRSAWYRERYGFTDATVDDLLLGWA--NGQLYEHFVDLFGV 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           ++E+ +  GL I    +    D F++RL+FP     G+V+ F GR         +  +  
Sbjct: 178 TQEEALATGLFIR-CKTGRIVDFFQDRLVFPYWK-HGRVVYFIGRATELTGDEPWEQAKY 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN--VVS 296
             L  + +   + + + +   ++   +    +   +++ EG  D +S  QAGV     V+
Sbjct: 236 KKLLTRSER--HPYVSQHIANETFYNEDAARARDTLMITEGVTDCISAMQAGVPCISPVT 293

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS-- 354
                    +L  L +    I++C D +D G+  A  AI+        G  V    +   
Sbjct: 294 VRFRKSDHDKLIALTERCGEIIICNDAEDSGVGEA-GAIETAHALQRAGRDVVLARIPRP 352

Query: 355 ---RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
                 D +  +   G  A   ++  + PL   L           T   +  L   L   
Sbjct: 353 PGTEKIDVNEVVTRQGPEALRTILGAAKPLPLYLL------EGIPTETPKTALRKQLGPT 406

Query: 412 INHIK--DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
           +  ++  D   R   S  +R R +              +  K NA
Sbjct: 407 LEALQNADPLTREACSDELRTRFRLKAATINALLRQAEQTAKPNA 451


>gi|312135658|ref|YP_004002996.1| DnaB domain-containing protein helicase domain-containing protein
           [Caldicellulosiruptor owensensis OL]
 gi|311775709|gb|ADQ05196.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor
           owensensis OL]
          Length = 607

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 131/376 (34%), Gaps = 72/376 (19%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           +D +K +   I I + IG+++   +  +      Y A CPFH ++ PSF+   ++ F++C
Sbjct: 4   KDIVKAIKEKIDIVDYIGRFLSLQKEGS-----SYKAICPFHPDRNPSFYIKPNEQFFHC 58

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F C   GD + F       SF E+V+ LAA  G+ +     +  KK+  +    +LI   
Sbjct: 59  FGCGTGGDIIRFAQLYHNISFGEAVKMLAAEIGLSISDDKQEENKKQTEKIPYEQLITYV 118

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
                     A       Y   RGI    +E + +G                        
Sbjct: 119 EK------CQANASLAKSYFASRGISEKFMEKYNVG------------------------ 148

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
                         +D   N ++FPI    G+VI +  R L+  +     + P+      
Sbjct: 149 --------------FDVENNAVVFPIVQD-GKVICWTRRNLNNPDRKY--DFPQG----Y 187

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
               +N     +            +  + + + EG  D L++ +A  Q  ++       +
Sbjct: 188 NAIPFNLDVLKD------------DKQTNVFITEGVFDALTIEEAIGQPAIALNSCTNQQ 235

Query: 305 YQLRLL---WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
             L+ L        +  + FD D  G   A K  D +          N+      +D + 
Sbjct: 236 NFLQELNRIKPQGKKFFILFDNDHDGKEQAKKLFDKMKKVYDVAL-CNWNNNLPYKDVNE 294

Query: 362 FIRCYGKTAFEKLIVE 377
           F         + L+ +
Sbjct: 295 FWIADPANCTKFLLWQ 310


>gi|310765755|gb|ADP10705.1| DnaG primase-like protein [Erwinia sp. Ejp617]
          Length = 1018

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 128/380 (33%), Gaps = 43/380 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P+  + +L   + ++ L   Q     ++  + V       CPFH EK+PS   +  K 
Sbjct: 3   RIPQKELDELKRSVSLAALAESQGHRLRQQGRDRVL-----LCPFHQEKSPSCVISPEKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C   G  + ++      S   +V RL   +G   P     +      +  L  L
Sbjct: 58  LYHCFGCGAAGSVVDWMMKTENVSLPRAVLRLREFSG-QNPSSSAAVPASPPARQTLTDL 116

Query: 121 IEVATDF-------FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
            +            +HH+L N+ +                               L   +
Sbjct: 117 DDDGQALLGQVVNGYHHNLLNSPEALAWLEKRGLNHPELVSHFKLGFAVAHGVAGLLPSV 176

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS--------RGQVIAFGGRTL 225
             K     +     L +  + +    D FR  L+ P+           RG+V+   GR  
Sbjct: 177 SSKAGKRLRDRLTLLGVLRETTRQ--DHFRGCLVVPVVGWSESGHAAQRGRVLQLYGRRT 234

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
                +K             ++LY     L      +  +    +S+ IIL E  +D ++
Sbjct: 235 LSDNQIKK---------GSARHLY-----LPAPLAGVWNEQALKASADIILCEALIDAMT 280

Query: 286 LCQAGVQNVVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343
              AG +NV+++ G      ++   L W    R+++ FD D+ G R A            
Sbjct: 281 FWCAGYRNVIAAFGANGFTADHLAALRWHGVKRVLIAFDRDEAGDRGAEAVA---GELQQ 337

Query: 344 PGNRVNFVLLSRGEDPDSFI 363
            G     V    G D +++ 
Sbjct: 338 AGIDAWRVRFPLGLDANAYA 357


>gi|253990785|ref|YP_003042141.1| DNA primase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211639115|emb|CAR67727.1| DnaG primase-like [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211639121|emb|CAR67733.1| DnaG primase-like [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782235|emb|CAQ85399.1| putative dna primase [Photorhabdus asymbiotica]
          Length = 1104

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/392 (19%), Positives = 131/392 (33%), Gaps = 53/392 (13%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSK 59
             P   +  L   + +  L        ++         DY   CPFH+EKTPS   + +K
Sbjct: 3   RVPDTDLAHLKQSVSLLGLA------RKQGRPMKKRGEDYVLRCPFHNEKTPSMVISPAK 56

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP----------LPVVDPKIEK 109
             Y+CF C   G  L ++    G +   +++RL  +AG+P               P+ + 
Sbjct: 57  NLYHCFGCGAAGSVLDWVIQTEGVTLKIAIRRLRELAGLPDMDNAVVAASSLAAQPESQA 116

Query: 110 KEKIQTDLIR-------LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162
               +  L         L+    DF+H +L  + + +                       
Sbjct: 117 APLPRPKLADLDDDGQALLRQVIDFYHQNLLASPEAKEWLERRGLNHPELVSHFKLGYAG 176

Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD-RFRNRLIFPIRSS-------- 213
                     L  K   E + +   L   G    T+    FR  ++ P+           
Sbjct: 177 HHGIGGSAGLLPSKSSQEGQQLRDKLSGLGVLRTTTRQDHFRGCVVVPVIGWAESASVAS 236

Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273
           RG+V+   GR       V              K+LY     L      +  +    ++S 
Sbjct: 237 RGRVLQLYGRRTQPDYKVLK---------DSPKHLY-----LPSPLAGVWNEEAMKAASE 282

Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLG-TALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAA 331
           IIL E  +D ++   AG +NV+++ G        L  L      R+++ FD D+ G R A
Sbjct: 283 IILCEALIDAMTFWCAGFRNVIAAYGVNGFNRDHLDALQYHGVKRVLIAFDRDEAGDRGA 342

Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
                +    L  G     V    G D + + 
Sbjct: 343 ---ASVAADLLESGIEAWRVQFPPGMDVNDYA 371


>gi|262194072|ref|YP_003265281.1| DNA primase catalytic core domain protein [Haliangium ochraceum DSM
           14365]
 gi|262077419|gb|ACY13388.1| DNA primase catalytic core domain protein [Haliangium ochraceum DSM
           14365]
          Length = 1026

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/465 (18%), Positives = 166/465 (35%), Gaps = 35/465 (7%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           R  I+ +     + +L+G+ +      +      +    P+  + TPS         +  
Sbjct: 7   RSLIEQVRERTDLVSLVGETIALAPSGSV-----FKGSSPWTRDATPSLVVWPHTRTWRD 61

Query: 65  FSCH--VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118
           FS    + GD   +L    G  F+ ++Q+LA  +GV +P  D         +   +  + 
Sbjct: 62  FSAGGSLGGDCFDWLQQRDGVPFLGALQQLAVRSGVEVPGGDAPALDAEIARIAERRRVE 121

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
            L+  A  ++H  L      R  +Y +  G     ++   LG+A  +       +   G 
Sbjct: 122 ALLTAAASYYHSVL--PTKIRSAWYRERYGFADATVDDLLLGWA--NGQLYEHFVDLFGV 177

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           ++E+ +  GL I    +    D F++RL+FP     G+V+ F GR         +  +  
Sbjct: 178 TQEEALATGLFIR-CKTGRIVDFFQDRLVFPYWK-HGRVVYFIGRATELTGDEPWEQAKY 235

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN--VVS 296
             L  + +   + + + +   ++   +    +   +++ EG  D +S  QAGV     V+
Sbjct: 236 KKLLTRSER--HPYVSQHIANETFYNEDAARARDTLMITEGVTDCISAMQAGVPCISPVT 293

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS-- 354
                    +L  L +    I++C D +D G   A  AI+        G  V    +   
Sbjct: 294 VRFRKSDHDKLIALTERCGEIIICNDAEDSGAGEA-GAIETAHALQRAGRDVVLARIPRP 352

Query: 355 ---RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
                 D +  +   G  A   ++  + PL   L           T   +  L   L   
Sbjct: 353 PGTEKIDVNEVVTRQGPEALRTILGAAKPLPLYLL------EGIPTETPKTALRKQLGPT 406

Query: 412 INHIK--DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
           +  ++  D   R   S  +R R +              +  K NA
Sbjct: 407 LEALQRADPLTREACSDELRTRFRLKAATINALLRQAEQTTKPNA 451


>gi|283479603|emb|CAY75519.1| DNA primase [Erwinia pyrifoliae DSM 12163]
          Length = 1021

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 72/393 (18%), Positives = 130/393 (33%), Gaps = 28/393 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P+  + +L   + ++ L   Q     ++  + V       CPFH EKTP    +  K 
Sbjct: 3   RIPQKELDELKRSVSLAALAESQGHRLRQQGRDRVL-----LCPFHQEKTPXLVISPEKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C   G  + ++      S   +V RL   +G   P     +      +  L  L
Sbjct: 58  LYHCFGCGAAGSVVDWMMKTENFSLPRAVLRLPEFSG-QNPSSSAAVPASPPARQTLTDL 116

Query: 121 IEVATDF-------FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
            +            +HH+L N+ +                               L   +
Sbjct: 117 DDDGQALLGQVVNGYHHNLLNSPEALAWLEKRGLNHPELVSHFKLGFAGAHGVAGLLPSV 176

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             K     +     L +    +   + R    +     +  G V A  GR L        
Sbjct: 177 SSKEGKRLRDRLTLLGVLRXTTRQDHFRGCLVVPVVGWAESGHV-AQRGRVLQLYGRRTL 235

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            +S         ++LY     L      +  +    +SS +IL E  +D ++   AG +N
Sbjct: 236 TDSQIKKG--SARHLY-----LPAPLVGVWNEQALKASSEVILCEALIDAMTFWCAGYRN 288

Query: 294 VVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           V+++ G      ++   L W    R+++ FD D+ G R A             G     V
Sbjct: 289 VIAAFGANSFTADHLAALRWHGVKRVLIAFDRDEAGDRGAEAVA---GELQQAGIDAWRV 345

Query: 352 LLSRGEDPDSF-IRCYGKTAFEKLIVESLPLVD 383
               G D +++ ++     +   L +ES   + 
Sbjct: 346 RFPLGLDANAYALKSGNPESAFALALESASRMH 378


>gi|156564217|ref|YP_001429727.1| dnaG primase [Bacillus phage 0305phi8-36]
 gi|154622914|gb|ABS83794.1| dnaG primase [Bacillus phage 0305phi8-36]
          Length = 424

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 170/470 (36%), Gaps = 85/470 (18%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE-KTPSFHCNDSKG 60
               D I+ +L    +  +  +Y             +  A CPFH++ +  + H  + K 
Sbjct: 5   KITDDHIRQILEENDLREVAKEY------GVVFNSSN-KATCPFHNDGEHGNLHIFEKKD 57

Query: 61  ---FYYCFS--CHVK-------------------------G-DHLSFLSALLGCSFIESV 89
               Y+CFS  C                            G + + F+  +   SF E+ 
Sbjct: 58  EDPSYFCFSRKCSAGRKWADEKKTKPNILTLPDGHKIEDGGPNVIGFVMNMERVSFPEAC 117

Query: 90  QRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGI 149
             L   AG+  P  +   + ++  +       ++  ++  + L N   K +  Y+  RGI
Sbjct: 118 MILMERAGITPPKANVNYKLEQAKKKT----HKLNYEYCRNLLAN---KAVMEYVYSRGI 170

Query: 150 DSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFP 209
              +I+ F++GY  +   S     ++                              +   
Sbjct: 171 TKQSIKKFRMGYISEDDNSNPLFGQKVAG---------------------RLVFGLVEEG 209

Query: 210 IRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRN 269
                 + IA   RTL K E  KYLN   +  + K   LY    A   ++          
Sbjct: 210 FNLKTSKTIAMAYRTL-KDEQPKYLNDYTSEAYEKRHYLYGLTHARKAIR---------- 258

Query: 270 SSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLR 329
           S  + ++ EGY DV+   QAG++N +++ GTA T  Q+  L +++  +V  +DGD  G  
Sbjct: 259 SRGYAMVFEGYTDVIIAHQAGLENSIATCGTAFTREQMEKLKRITSNLVFWYDGDSAGFD 318

Query: 330 AAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA---FEKLIVESLPLVDMLW 386
           A  ++I+     L  G RV  V +S G DP   +    +        +   + P + ++ 
Sbjct: 319 AMMESIE---DLLEFGFRVKIV-VSPGMDPAEVMNKLKQDEASILNFIKGNAKPALQVVA 374

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           ++   +      D + E    L   +  I++   +  +   +  RL    
Sbjct: 375 EQTLSDFDRKMQDAQMEALDELLPILESIQNPSEKVVFKSMVEKRLGVSL 424


>gi|310766565|gb|ADP11515.1| DNA primase [Erwinia sp. Ejp617]
          Length = 1011

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 74/380 (19%), Positives = 127/380 (33%), Gaps = 43/380 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P+  + +L   + ++ L   Q      +  + V       CPFH EKTPS   +  K 
Sbjct: 3   RIPQKELDELKRSVSLAALAESQGHRLRLQGRDRVL-----LCPFHQEKTPSCVISPDKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C   G  + ++    G S  ++V RL   AG   P            +  L  L
Sbjct: 58  LYHCFGCGAAGSVVDWMMKTEGFSLPKAVLRLREFAGHN-PSSSAAAVPAAPPRQTLTDL 116

Query: 121 IEVATDF-------FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
            +            +H +L N+ +                               L   +
Sbjct: 117 DDDGQALLGQVVNGYHRNLLNSPEALTWLEKRGLNHPELVSHFKLGFAGAHGVAGLLPSV 176

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS--------RGQVIAFGGRTL 225
             K     +     L +  + +    D FR  L+ P+           RG+V+   GR  
Sbjct: 177 SSKEGKRLRDRLTLLGVLRETTRQ--DHFRGCLVVPVVGWSESGHAAQRGRVLQLYGRRT 234

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
                +K             ++LY     L      +  +    +S+ IIL E  +D ++
Sbjct: 235 LGDNQIKK---------GSARHLY-----LPAPLAGVWNEQALKASAEIILCEALIDAMT 280

Query: 286 LCQAGVQNVVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343
              AG +NV+++ G      ++   L W    R+++ FD D+ G R A            
Sbjct: 281 FWCAGYRNVIAAFGANSFTADHLAALRWHGVKRVLIAFDRDEAGDRGAEAVA---GELQQ 337

Query: 344 PGNRVNFVLLSRGEDPDSFI 363
            G     V    G D +++ 
Sbjct: 338 AGIDAWRVRFPLGLDANAYA 357


>gi|297248756|ref|ZP_06932474.1| DNA primase [Brucella abortus bv. 5 str. B3196]
 gi|297175925|gb|EFH35272.1| DNA primase [Brucella abortus bv. 5 str. B3196]
          Length = 198

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 106/200 (53%), Gaps = 10/200 (5%)

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELAD 507
           +       +   S  L +S+LVKG          LRE A++LTL+NHP +++E ++ LA 
Sbjct: 1   RGGPAGSGRLAISDSLARSTLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAA 60

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
           +   ++ L+ L   +       +      + + L + G G+L+K L++ V+ A LW+ATT
Sbjct: 61  LDLGHDALKTLHLAMLDVLAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATT 120

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            A   D R+  +QAL L++R R L ++   +E  +       E ++T  L + L ++  Q
Sbjct: 121 LAAEDDAREALRQALHLHQRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQ 173

Query: 628 IHQIESQEAMIEGFGKMSGR 647
           I + ++ EA+I+GFG  SGR
Sbjct: 174 ILKADATEALIDGFGLSSGR 193


>gi|37525094|ref|NP_928438.1| hypothetical protein plu1126 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|37527553|ref|NP_930897.1| hypothetical protein plu3689 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784520|emb|CAE13420.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786988|emb|CAE16062.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 1104

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 130/392 (33%), Gaps = 53/392 (13%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSK 59
             P   +  L   + +  L        ++         DY   CPFH+EKTPS   + +K
Sbjct: 3   RVPDTDLARLKQTVSLLGLA------RKQGRPMKKRGEDYVLRCPFHNEKTPSMVISPAK 56

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-------------LPVVDPK 106
             Y+CF C   G  L ++    G +   +++RL  +AG+P              P     
Sbjct: 57  NLYHCFGCGAAGSVLDWVIQTEGVTLKIAIRRLRELAGLPDMDNAVVAASSLAAPPESQA 116

Query: 107 IEKKEKIQTDL----IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162
                    DL      L+    DF+H  L  + + +                       
Sbjct: 117 APLPRPKLADLDDDGQALLHQVIDFYHQHLLASPEAKAWLARRGLNHPELVSHFRLGYAG 176

Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD-RFRNRLIFPIRSS-------- 213
                     L  K   E + +   L   G    T+    FR  ++ PI           
Sbjct: 177 HHGISGSAGLLPSKDSQEGQQLRGKLSGLGVLRTTTRQDHFRGCVVVPIIGWAESASVAS 236

Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273
           RG+V+   GR       V              K+LY     L+     +  +    +++ 
Sbjct: 237 RGRVLQLYGRRTQPDYKVLK---------DSPKHLY-----LSSPLAGVWNEAAMKAAAE 282

Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLG-TALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAA 331
           IIL E  +D ++   AG +NV+++ G        L  L      R+++ FD D+ G R A
Sbjct: 283 IILCEALIDAMTFWCAGFRNVIAAFGVNGFNREHLEALQYHGVKRVLIAFDRDEAGDRGA 342

Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
               ++    L  G     V    G D + + 
Sbjct: 343 ---ANVAADLLEAGIEAWRVQFPPGMDANDYA 371


>gi|37525113|ref|NP_928457.1| hypothetical protein plu1145 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784539|emb|CAE13439.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 603

 Score =  146 bits (369), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 130/392 (33%), Gaps = 53/392 (13%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSK 59
             P   +  L   + +  L        ++         DY   CPFH+EKTPS   + +K
Sbjct: 3   RVPDTDLARLKQTVSLLGLA------RKQGRPMKKRGEDYVLRCPFHNEKTPSMVISPAK 56

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-------------LPVVDPK 106
             Y+CF C   G  L ++    G +   +++RL  +AG+P              P     
Sbjct: 57  NLYHCFGCGAAGSVLDWVIQTEGVTLKIAIRRLRELAGLPDMDNAVVAASSLAAPPGSQA 116

Query: 107 IEKKEKIQTDL----IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162
                    DL      L+    DF+H  L  + + +                       
Sbjct: 117 APLPRPKLADLDDDGQALLHQVIDFYHQHLLASPEAKAWLERRGLNHPELVSHFKLGYAG 176

Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD-RFRNRLIFPIRSS-------- 213
                     L  K   E + +   L   G    T+    FR  ++ PI           
Sbjct: 177 HHGISGSAGLLPSKDSQEGQQLRGKLSGLGVLRTTTRQDHFRGCVVVPIIGWAESASVAS 236

Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273
           RG+V+   GR       V              K+LY     L+     +  +    +++ 
Sbjct: 237 RGRVLQLYGRRTQPDYKVLK---------DSPKHLY-----LSSPLAGVWNEAAMKAAAE 282

Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLG-TALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAA 331
           IIL E  +D ++   AG +NV+++ G        L  L      R+++ FD D+ G R A
Sbjct: 283 IILCEALIDAMTFWCAGFRNVIAAFGVNGFNREHLEALQYHGVKRVLIAFDRDEAGDRGA 342

Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
               ++    L  G     V    G D + + 
Sbjct: 343 ---ANVAADLLEAGIEAWRVQFPPGMDANDYA 371


>gi|37524550|ref|NP_927894.1| hypothetical protein plu0544 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|37525104|ref|NP_928448.1| hypothetical protein plu1136 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783974|emb|CAE12839.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784530|emb|CAE13430.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 1104

 Score =  146 bits (369), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 130/392 (33%), Gaps = 53/392 (13%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSK 59
             P   +  L   + +  L        ++         DY   CPFH+EKTPS   + +K
Sbjct: 3   RVPDTDLARLKQTVSLLGLA------RKQGRPMKKRGEDYVLRCPFHNEKTPSMVISPAK 56

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-------------LPVVDPK 106
             Y+CF C   G  L ++    G +   +++RL  +AG+P              P     
Sbjct: 57  NLYHCFGCGAAGSVLDWVIQTEGVTLKIAIRRLRELAGLPDMDNAVVAASSLAAPPGSQA 116

Query: 107 IEKKEKIQTDL----IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162
                    DL      L+    DF+H  L  + + +                       
Sbjct: 117 APLPRPKLADLDDDGQALLHQVIDFYHQHLLASPEAKAWLERRGLNHPELVSHFKLGYAG 176

Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD-RFRNRLIFPIRSS-------- 213
                     L  K   E + +   L   G    T+    FR  ++ PI           
Sbjct: 177 HHGISGSAGLLPSKDSQEGQQLRGKLSGLGVLRTTTRQDHFRGCVVVPIIGWAESASVAS 236

Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273
           RG+V+   GR       V              K+LY     L+     +  +    +++ 
Sbjct: 237 RGRVLQLYGRRTQPDYKVLK---------DSPKHLY-----LSSPLAGVWNEAAMKAAAE 282

Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLG-TALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAA 331
           IIL E  +D ++   AG +NV+++ G        L  L      R+++ FD D+ G R A
Sbjct: 283 IILCEALIDAMTFWCAGFRNVIAAFGVNGFNREHLEALQYHGVKRVLIAFDRDEAGDRGA 342

Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
               ++    L  G     V    G D + + 
Sbjct: 343 ---ANVAADLLEAGIEAWRVQFPPGMDANDYA 371


>gi|153874053|ref|ZP_02002415.1| truncated DNA primase [Beggiatoa sp. PS]
 gi|152069483|gb|EDN67585.1| truncated DNA primase [Beggiatoa sp. PS]
          Length = 384

 Score =  146 bits (369), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 107/396 (27%), Positives = 165/396 (41%), Gaps = 28/396 (7%)

Query: 207 IFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKD 265
           +FPI   RG+VIAFGGR L   E   KYLNSPET LF K + LY ++ A           
Sbjct: 1   MFPILDVRGRVIAFGGRKLGTSEHEPKYLNSPETPLFQKSRELYGWYFAGKI-------- 52

Query: 266 VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDD 325
               S   II+VEGYMDV++L Q G+ NVV++LGTA T   L  L++  P I+  FDGD 
Sbjct: 53  ---RSLQKIIVVEGYMDVVALMQYGITNVVATLGTATTHQHLTQLFRRVPEIIFGFDGDQ 109

Query: 326 PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDML 385
            G +AA++A++  L  L  G +V FV L +G DPD+ IR  G   F   +V ++PL + L
Sbjct: 110 AGQKAAWRALETALSLLKEGRQVRFVFLPQGSDPDTLIRQEGTENFNTRLVNAMPLSNFL 169

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
           +    +     + D RA L    K  +  +          Q + +          T    
Sbjct: 170 FDTLMQQIDMTSIDGRARLVELAKPLLKQLPPGPYCDLMWQKLSELTGIHLGNLATLIQ- 228

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
                        ++   ++    +  K    K+ SL   A+   L++ P + Q      
Sbjct: 229 -------------KETIPKQPTIKTSQKVTNLKELSLAHKAI-ACLLHKPVLSQSIDYPN 274

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
             + +      KL   L              I +      + ++L QL  +       S 
Sbjct: 275 KKLSFFKQLDIKLLLELIEFTRHNPQLNLGAICEHWRGTEYEQILNQLAVKNTHLTDNSV 334

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             +    D      +  A  +R   L+++   +  +
Sbjct: 335 DIDKEFFDAINRLYKEYA-TQRLVFLTQKITNLTAE 369


>gi|28199480|ref|NP_779794.1| hypothetical protein PD1601 [Xylella fastidiosa Temecula1]
 gi|182682212|ref|YP_001830372.1| zinc finger CHC2-family protein [Xylella fastidiosa M23]
 gi|28057595|gb|AAO29443.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|182632322|gb|ACB93098.1| zinc finger CHC2-family protein [Xylella fastidiosa M23]
 gi|307578483|gb|ADN62452.1| zinc finger CHC2-family protein [Xylella fastidiosa subsp.
          fastidiosa GB514]
          Length = 351

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 9  KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
          + L   I +  ++G+YV   R        +Y   CPFHDE TPSF     KGF +CF C 
Sbjct: 7  QALRARIDLVEVVGRYVTLQRTGA-----EYTGLCPFHDEHTPSFTVIPHKGFVHCFGCG 61

Query: 69 VKGDHLSFLSALLGCSFIESVQRL 92
             D + F+   L   F E+V++L
Sbjct: 62 AHHDAIGFVMRYLNVDFREAVRQL 85


>gi|283479610|emb|CAY75526.1| DNA primase [Erwinia pyrifoliae DSM 12163]
          Length = 1021

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/393 (18%), Positives = 127/393 (32%), Gaps = 28/393 (7%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
             P+  + +L   + ++ L   Q     ++  + V       CPFH EKTP    +  K 
Sbjct: 3   RIPQKELDELKRSVSLAALAESQGHRLRQQGRDRVL-----LCPFHQEKTPXLVISPEKN 57

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C   G  + ++      S   +V RL   AG   P            +  L  L
Sbjct: 58  LYHCFGCGAAGSVVDWMMKTENFSLPRAVLRLREFAGHN-PSSSAAAVPASPPRQTLTDL 116

Query: 121 IEVATDF-------FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
            +            +H +L N+ +                               L   +
Sbjct: 117 DDDGQALLGQVVNGYHRNLLNSPEALAWLEKRGLNHPELVSHFKLGFAGAHGVAGLLPSV 176

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             K     +     L +    +   + R    +     S  G   A  GR L        
Sbjct: 177 SSKEGKRLRDRLTLLGVLRXTTRQDHFRGCLVVPVVGWSESGN-AAQRGRVLQLYGRRTL 235

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            +S         ++LY     L      +  +    +SS +IL E  +D ++   AG +N
Sbjct: 236 TDSQIKKG--SARHLY-----LPAPLVGVWNEQALKASSEVILCEALIDAMTFWCAGYRN 288

Query: 294 VVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           V+++ G      ++   L W    R+++ FD D+ G R A             G     V
Sbjct: 289 VIAAFGANSFTADHLAALRWHGVKRVLIAFDRDEAGDRGAEAVA---GELQQAGIDAWRV 345

Query: 352 LLSRGEDPDSF-IRCYGKTAFEKLIVESLPLVD 383
               G D +++ ++     +   L +ES   + 
Sbjct: 346 RFPLGLDANAYALKSGNPESAFALALESASRMH 378


>gi|37527577|ref|NP_930921.1| hypothetical protein plu3714 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787012|emb|CAE16086.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 1105

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 130/392 (33%), Gaps = 53/392 (13%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSK 59
             P   +  L   + +  L        ++         DY   CPFH+EKTPS   + +K
Sbjct: 3   RVPDTDLVHLKQTVSLLGLA------RKQGRPMKKRGEDYVLRCPFHNEKTPSMVISPAK 56

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-------------LPVVDPK 106
             Y+CF C   G  L ++    G +   +++RL  +AG+P              P     
Sbjct: 57  NLYHCFGCGAAGSVLDWVIQTEGVTLKIAIRRLRELAGLPDMDNAVVAASSLAAPPESQA 116

Query: 107 IEKKEKIQTDL----IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162
                    DL      L+    DF+H  L  + + +                       
Sbjct: 117 APLPRPKLADLDDDGQALLHQVIDFYHQHLLASPEAKAWLARRGLNHPELVSHFRLGYAG 176

Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD-RFRNRLIFPIRSS-------- 213
                     L  K   E + +   L   G    T+    FR  ++ PI           
Sbjct: 177 HHGISGSAGLLPSKDSQEGQQLRGKLSGLGVLRTTTRQDHFRGCVVVPIIGWAESTSVAS 236

Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273
           RG+V+   GR       V              K+LY     L+     +  +    +++ 
Sbjct: 237 RGRVLQLYGRRTQPDYKVLK---------DSPKHLY-----LSSPLAGVWNEAAMKAAAE 282

Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLG-TALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAA 331
           IIL E  +D ++   AG +NV+++ G        L  L      R+++ FD D+ G R A
Sbjct: 283 IILCEALIDAMTFWCAGFRNVIAAFGVNGFNREHLEALQYHGVKRVLIAFDRDEAGDRGA 342

Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
               ++    L  G     V    G D + + 
Sbjct: 343 ---ANVAADLLEAGIEAWRVQFPPGMDANDYA 371


>gi|226327183|ref|ZP_03802701.1| hypothetical protein PROPEN_01048 [Proteus penneri ATCC 35198]
 gi|225204401|gb|EEG86755.1| hypothetical protein PROPEN_01048 [Proteus penneri ATCC 35198]
          Length = 105

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 2  NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            PR FI DLL    I +LI   V   ++  N       ACCPFH+EKTPSF  N  K F
Sbjct: 23 RIPRSFINDLLARTDIIDLIDARVPLKKQGKNHS-----ACCPFHNEKTPSFTVNSDKQF 77

Query: 62 YYCFSCHVKGDHLSF 76
          Y+CF C   G+ + F
Sbjct: 78 YHCFGCGAHGNAIDF 92


>gi|71898026|ref|ZP_00680231.1| Zn-finger, CHC2 type [Xylella fastidiosa Ann-1]
 gi|71732270|gb|EAO34325.1| Zn-finger, CHC2 type [Xylella fastidiosa Ann-1]
          Length = 351

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 9  KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
          + L   I +  ++G+YV   R        +Y   CPFH E+TPSF     KGF +CF C 
Sbjct: 7  QALRARIDLVEVVGRYVTLRRTGA-----EYTGLCPFHHERTPSFTVIPHKGFVHCFGCG 61

Query: 69 VKGDHLSFLSALLGCSFIESVQRL 92
             D + F+   L   F E+V++L
Sbjct: 62 AHHDAIGFVMRYLNVDFREAVRQL 85


>gi|253990781|ref|YP_003042137.1| DNA primase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782231|emb|CAQ85395.1| putative dna primase [Photorhabdus asymbiotica]
          Length = 1096

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 75/366 (20%), Positives = 125/366 (34%), Gaps = 47/366 (12%)

Query: 28  DRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSF 85
            ++         DY   CPFH+EKTPS   + +K  Y+CF C   G  L ++    G + 
Sbjct: 15  RKQGRPMKKRGEDYVLRCPFHNEKTPSMVISPAKNLYHCFGCGAAGSVLDWVIQTEGVTL 74

Query: 86  IESVQRLAAIAGVP----------LPVVDPKIEKKEKIQTDLIR-------LIEVATDFF 128
             +++RL  +AG+P               P+ +     +  L         L+    DF+
Sbjct: 75  KIAIRRLRELAGLPDMDNAVVAASSLAAQPESQAAPLPRPKLADLDDDGQALLRQVIDFY 134

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
           H +L  + + +                                 L  K   E + +   L
Sbjct: 135 HQNLLASPEAKEWLERRGLNHPELVSHFKLGYAGHHGIGGSAGLLPSKSSQEGQQLRDKL 194

Query: 189 LIDGDNSATSYD-RFRNRLIFPIRSS--------RGQVIAFGGRTLSKGESVKYLNSPET 239
              G    T+    FR  ++ P+           RG+V+   GR       V        
Sbjct: 195 SGLGVLRTTTRQDHFRGCVVVPVIGWAESASVASRGRVLQLYGRRTQPDYKVLK------ 248

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
                 K+LY     L      +  +    ++S IIL E  +D ++   AG +NV+++ G
Sbjct: 249 ---DSPKHLY-----LPSPLAGVWNEEAMKAASEIILCEALIDAMTFWCAGFRNVIAAYG 300

Query: 300 -TALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
                   L  L      R+++ FD D+ G R A     +    L  G     V    G 
Sbjct: 301 VNGFNRDHLDALQYHGVKRVLIAFDRDEAGDRGA---ASVAADLLESGIEAWRVQFPPGM 357

Query: 358 DPDSFI 363
           D + + 
Sbjct: 358 DVNDYA 363


>gi|15837107|ref|NP_297795.1| hypothetical protein XF0505 [Xylella fastidiosa 9a5c]
 gi|15838713|ref|NP_299401.1| hypothetical protein XF2122 [Xylella fastidiosa 9a5c]
 gi|9105358|gb|AAF83315.1|AE003899_7 hypothetical protein XF_0505 [Xylella fastidiosa 9a5c]
 gi|9107252|gb|AAF84921.1|AE004027_3 hypothetical protein XF_2122 [Xylella fastidiosa 9a5c]
          Length = 350

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           + L   I +  L+G+ V   R        +Y   CPFHDE TPSF     KGF +CF C 
Sbjct: 7   QALRARIDLVELVGRSVTLRRTGA-----EYTGLCPFHDEHTPSFTVIPHKGFVHCFGCG 61

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114
              D + F+   L   F E+V++L   A   LP  + +  ++    
Sbjct: 62  AHHDAIGFVMRYLNVDFREAVRQLDRGA---LPQAEQQAPRQRPKY 104


>gi|160331765|ref|XP_001712589.1| dnaG [Hemiselmis andersenii]
 gi|159766038|gb|ABW98264.1| dnaG [Hemiselmis andersenii]
          Length = 722

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 105/461 (22%), Positives = 189/461 (40%), Gaps = 50/461 (10%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           R+FI  ++  +    +I   +  +++          A CPFH EK+PSF  ND KG Y+C
Sbjct: 49  RNFINLIISRLSKL-IIENGIKLEKKGK-----YMVAQCPFHFEKSPSFFVNDKKGVYHC 102

Query: 65  FSCHVKGDHLSF---LSAL---LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL- 117
           F C   G+  SF   L         +   S ++L           +    K     + + 
Sbjct: 103 FGCGASGNLFSFQKHLKETTIFKNKNNANSEKKLNNEKFFKAYQKNLLDFKSSDNFSLIS 162

Query: 118 ---IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
                L++++++FF   LK +   +    L  R I     ++F++GY+P  +  L E+L 
Sbjct: 163 FQEFFLLQLSSEFFLSLLKKSYKPKTL--LQLRNISFGTAKIFQIGYSPPRKKYLFEYLS 220

Query: 175 QKGFS---------------EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219
              F                  +  +         +   +D F++R I PIR+ +G VI 
Sbjct: 221 DLRFPRKKLIKSGIFFFKKKPIEYEKFQKRKSKKLNYYYFDMFQDRFIIPIRNQKGLVIG 280

Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279
           FGGR +SK    KYLNS E+ LF K ++++          + +  +  +N    ++LVEG
Sbjct: 281 FGGRLISKTNFPKYLNSSESQLFKKNQSIF---------SQIMIINSLKNPPKILLLVEG 331

Query: 280 YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKAIDL 337
           YMD ++L Q G++   +SLGT+ + +Q+           IV+CFD D+ G    +  +  
Sbjct: 332 YMDTMALFQNGLRFSAASLGTSFSFFQINKCRNLCSMKHIVVCFDSDNAGKNGIFLLLKK 391

Query: 338 VLCHLIPGNRVNFVLLSR------GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391
              + I  N+ +   +S        +DPD F++  G   F  +I+ +     + ++    
Sbjct: 392 NFFNPIIQNKTSQFSISEIPSNFFSKDPDDFLQKEGCFNFSNIILNNSIPPMVWFENFLF 451

Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
             S         +   +            +      I ++ 
Sbjct: 452 LDSRENIFFLNNIFSQINYIKKKFLPLTKKENQYSQIFEKF 492


>gi|71276656|ref|ZP_00652927.1| Zn-finger, CHC2 type [Xylella fastidiosa Dixon]
 gi|71899153|ref|ZP_00681316.1| Zn-finger, CHC2 type [Xylella fastidiosa Ann-1]
 gi|71162528|gb|EAO12259.1| Zn-finger, CHC2 type [Xylella fastidiosa Dixon]
 gi|71731011|gb|EAO33079.1| Zn-finger, CHC2 type [Xylella fastidiosa Ann-1]
          Length = 351

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           + L   I +  ++G+YV   R        +Y   CPFH E TPSF     KGF +CF C 
Sbjct: 7   QALRARIDLVEVVGRYVTLQRTGA-----EYTGLCPFHHEHTPSFTVISHKGFVHCFGCG 61

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114
              D + F+   L   F E+V++L + A   LP  + + +++    
Sbjct: 62  AHHDAIGFVMRYLNVDFREAVRQLDSGA---LPQAEQQTQRQRPEY 104


>gi|329121141|ref|ZP_08249772.1| DNA primase [Dialister micraerophilus DSM 19965]
 gi|327471303|gb|EGF16757.1| DNA primase [Dialister micraerophilus DSM 19965]
          Length = 77

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 6/80 (7%)

Query: 1  MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          M  +  +FI+ +   +PI  +IG YV   ++        +WACCPFH EKTPSF  +  K
Sbjct: 1  MKNFDNNFIQRIKDSLPIEQVIGAYVPLKKKGR-----SFWACCPFHQEKTPSFSVSPDK 55

Query: 60 GFYYCFSCHVKGDHLSFLSA 79
          GFY+CF C+  GD +SF+  
Sbjct: 56 GFYHCFGCNESGDIVSFVEK 75


>gi|28628139|gb|AAO34622.1| unknown [Erwinia chrysanthemi]
          Length = 508

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 136/387 (35%), Gaps = 49/387 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
                 ++ L   + +  +   Q     ++  ++V       CPFH E TPS     SK 
Sbjct: 3   RLTPAELEQLKRGVSLRAVAQSQGHRLKKQGADSV----VCRCPFHQENTPSCVITPSKN 58

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----------VPLPVVDPKIEKK 110
            Y+CF C   G  L +L      ++ +++ RL  +AG          +  P   P  +K 
Sbjct: 59  LYHCFGCGASGSVLDWLQHTERLTYPQTLLRLRELAGSASFLAAAPELSSPPASPPRQKL 118

Query: 111 EKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD----SR 166
             +  D   L+    DF+H SL  + + +  +           +  F+LG+A        
Sbjct: 119 ADLDDDGQALLHQVIDFYHQSLLASPEAQQ-WLAGRGLTHPELVSHFRLGFAGHHGIGGS 177

Query: 167 YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS--------RGQVI 218
             L      +     +   AGL +    +    D FR  ++ P+           RG+V+
Sbjct: 178 AGLLPSSSSQEGKRLREKLAGLGVLRATTRQ--DHFRGCVVMPVIGWAESANVAQRGRVM 235

Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278
              GR +     +    SP        K+LY     L      +  +    +SS +IL E
Sbjct: 236 QLYGRRVQPDHKI-LKGSP--------KHLY-----LPSPLAGVWNEEALKASSDLILCE 281

Query: 279 GYMDVLSLCQAGVQN-VVSSLGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAID 336
             +D ++   AG +N   +      T   L  L      R+ + +D D  G R A     
Sbjct: 282 SLIDAMTFWCAGFRNVTTAYGANGFTADHLAALQYHGVKRVQIAYDRDAAGDRGAESVA- 340

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFI 363
                L  G     V    G D +++ 
Sbjct: 341 --AELLEAGIEAWRVRFPPGLDANAYA 365


>gi|71898850|ref|ZP_00681018.1| Zn-finger, CHC2 type [Xylella fastidiosa Ann-1]
 gi|71731436|gb|EAO33499.1| Zn-finger, CHC2 type [Xylella fastidiosa Ann-1]
          Length = 174

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           + L   I +  ++G+YV   R        +Y   CPFH E TPSF     KGF +CF C 
Sbjct: 19  QALRARIDLVEVVGRYVTLQRTGA-----EYTGLCPFHHEHTPSFTVIPHKGFVHCFGCG 73

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114
              D + F+   L   F E+V++  + A   LP  + + +++    
Sbjct: 74  AHHDAIGFVMRYLNVDFREAVRQFDSGA---LPQAEQQTQRQRPEY 116


>gi|37527449|ref|NP_930793.1| hypothetical protein plu3580 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|37527458|ref|NP_930802.1| hypothetical protein plu3589 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786884|emb|CAE15953.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786893|emb|CAE15962.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 1104

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 131/392 (33%), Gaps = 53/392 (13%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSK 59
             P   +  L   + +  L        ++         DY   CPFH+EKTPS   + +K
Sbjct: 3   RIPDTDLAHLKQTVSLLGLA------RKQGRTMKKRGEDYVLRCPFHNEKTPSMVISPAK 56

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP----------LPVVDPKIEK 109
             Y+CF C   G  L ++    G +    ++RL  +AG+P               P+++ 
Sbjct: 57  NLYHCFGCGAAGSVLDWVIQTEGVTLKIGIRRLRELAGLPDMDNAVVAASSLAAQPELQA 116

Query: 110 KEKIQTDLIR-------LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162
               +  L         L+    DF+H  L  + + +                       
Sbjct: 117 APLPRPKLADLDDDGQALLHQVIDFYHQHLLASPEAKAWLERRGLNHPELVSHFKLGYAG 176

Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD-RFRNRLIFPIR--------SS 213
                     L  K   E + +   L   G    T+    FR  ++ P+         +S
Sbjct: 177 HHGIGGSAGLLPSKSSQEGQQLRDKLSGLGVLRTTTRQDHFRGCVVVPVIGWTESVNVTS 236

Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273
           RG+V+   GR       V              K+LY     L      +  +    +S+ 
Sbjct: 237 RGRVLQLYGRRTQPDYKVLK---------DSPKHLY-----LPSPLAGVWNESAMQASNE 282

Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLG-TALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAA 331
           IIL E  +D ++   AG +NV+++ G        L  L      R+++ FD D+ G R A
Sbjct: 283 IILCEALIDAMTFWCAGFRNVIAAFGVNGFNREHLEALQYHGVKRVLIAFDRDEAGDRGA 342

Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
                     L  G     V    G D + + 
Sbjct: 343 TSVA---ADLLEAGIEAWRVQFPPGMDANDYA 371


>gi|37527561|ref|NP_930905.1| hypothetical protein plu3697 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786996|emb|CAE16070.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 1104

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 131/394 (33%), Gaps = 57/394 (14%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSK 59
             P   +  L   + +  L        ++         DY   CPFH+EKTPS   + +K
Sbjct: 3   RVPDTDLARLKQTVSLLGLA------RKQGRPMKKRGEDYVLRCPFHNEKTPSMVISPAK 56

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP----------LPVVDPKIEK 109
             Y+CF C   G  L ++    G +   +++RL  +AG+P               P+ + 
Sbjct: 57  NLYHCFGCGAAGSVLDWVIQTEGVTLKIAIRRLRELAGLPDMDNAVVAASSLAALPESQA 116

Query: 110 KEKIQTDLIR-------LIEVATDFFHHSL-----------KNARDKRLHYYLDERGIDS 151
               +  L         L+    DF+H  L           +   +        + G   
Sbjct: 117 APLPRPKLADLDDDGQALLHQVIDFYHQHLLASPEAKAWLARRGLNHPELVNHFKLGYAG 176

Query: 152 HAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIR 211
           H       G  P       +HLR K  S   ++      D                  + 
Sbjct: 177 HHGIGGSAGLLPSKSSQEGQHLRDK-LSGLGVLRTTTRQDHFRGCVVVPVIGWAESASV- 234

Query: 212 SSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271
           +SRG+V+   GR       V              K+LY     L      +  +    ++
Sbjct: 235 ASRGRVLQLYGRRTQPDYKVLK---------DSPKHLY-----LPSPLAGVWNEAAMKAA 280

Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLG-TALTEYQLRLLWKL-SPRIVLCFDGDDPGLR 329
           + IIL E  +D ++   AG +NV+++ G        L  L      R+++ FD D+ G R
Sbjct: 281 AEIILCEALIDAMTFWCAGFRNVIAAFGVNGFNREHLDALQYHGVKRVLIAFDRDEAGDR 340

Query: 330 AAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
                 ++    L  G     V    G D + + 
Sbjct: 341 G---VANVAADLLEAGIEAWRVQFPPGMDANDYA 371


>gi|251789525|ref|YP_003004246.1| zinc finger CHC2-family protein [Dickeya zeae Ech1591]
 gi|247538146|gb|ACT06767.1| zinc finger CHC2-family protein [Dickeya zeae Ech1591]
          Length = 1084

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/393 (19%), Positives = 132/393 (33%), Gaps = 48/393 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
                 ++ L   + +  +   Q     ++        Y   CPFH E TPS     SK 
Sbjct: 3   RLTPAELEQLKRGVSLRAVAQSQGHTLKKQGA----DSYVCRCPFHQENTPSCVITPSKN 58

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLI 118
            Y+CF C   G  L +L      ++ +++ RL  +AG    +             +  L 
Sbjct: 59  LYHCFGCGASGSVLDWLQHTERLTYPQTLLRLRELAGTASSLAAAPALSSPPVPPRQKLA 118

Query: 119 R-------LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD----SRY 167
                   L+     F+H SL ++ + +  +           +  F+LG+A         
Sbjct: 119 DLDDDGQALLNQVIHFYHQSLLDSPEAQQ-WLAGRGLSHPELVSHFRLGFAGHHGIGGSA 177

Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS--------RGQVIA 219
            +      +     +   AGL +    +    D FR  ++ P+           RG+V+ 
Sbjct: 178 GVLPSSSSQEGKRLREKLAGLGVLRAATRQ--DHFRGCVVMPVIGWSESASVAQRGRVMQ 235

Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279
             GR +     +    SP        K+LY     L      +  +    +SS +IL E 
Sbjct: 236 LYGRRVQPDHKI-LKGSP--------KHLY-----LPSPLAGVWNEEALKASSDLILCES 281

Query: 280 YMDVLSLCQAGVQN-VVSSLGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAIDL 337
            +D ++   AG +N   +      T   L  L      R+ + +D D+ G R A      
Sbjct: 282 LIDAMTFWCAGFRNVTTAYGANGFTADHLAALQYHGVKRVQIAYDRDEAGDRGAESVA-- 339

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
               L  G     V    G D +++    G   
Sbjct: 340 -AELLEAGIEAWRVRFPPGLDANAYALKSGHPE 371


>gi|293376955|ref|ZP_06623170.1| DNA primase family protein [Turicibacter sanguinis PC909]
 gi|292644436|gb|EFF62531.1| DNA primase family protein [Turicibacter sanguinis PC909]
          Length = 413

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
                 +  L  + I  +I  YV  ++   N     Y   CPFHDEKTPSF  +  K  Y
Sbjct: 282 ISPHLTRHYLSQLDIVEVISDYVKLEKSGKN-----YKGICPFHDEKTPSFVVSKEKQIY 336

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            CF C   G+ ++F++ +   SF +++  L     +    V      KE ++T L    E
Sbjct: 337 KCFGCGEGGNAINFIANIENISFKQALFLLKDKYNLKEYEV-----VKEPLKTRLDNASE 391

Query: 123 VATD 126
               
Sbjct: 392 KTKR 395



 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 136/319 (42%), Gaps = 32/319 (10%)

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           + +L++ A + +  SL N   K    YL ERGI   +I+ F++G+   S       L+ K
Sbjct: 1   MKKLLDEANNIYQKSLLNN--KEQLEYLMERGITLESIKEFEIGF---SDSFCLNELKAK 55

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
                      L   G  +    +R  NR++FPIR  +G++  F GRT+     VKYL S
Sbjct: 56  HQD-------DLKALGLLNDRGGERNWNRIMFPIRDCKGEICGFNGRTVDVNNDVKYLLS 108

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PE++ F K K LYN   A  Y++            + + +VEG +DV++  Q G++NVV 
Sbjct: 109 PESMGFSKTKTLYNLDRAKKYIK----------EKNEVHIVEGILDVVAYHQNGIKNVVC 158

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV----- 351
           +LGTALT+  + +L   + + +  +DGD  G +A+      +   +              
Sbjct: 159 TLGTALTKEHIDMLKPHAEKFIFGYDGDYAGFKASITNARFLSSVMREEVENYKATENIK 218

Query: 352 --LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
             +     DP   ++        K+I +          +   N  +    E+ + +  + 
Sbjct: 219 FSMFPENSDPCDCLKFE--DQLLKIINDPKDYYTYCRTKCELNSIYEKVFEKVDRKEKIT 276

Query: 410 NCINHIKDQKLRYYYSQAI 428
             I  I    L  +Y   +
Sbjct: 277 EEIKEI-SPHLTRHYLSQL 294


>gi|118588969|ref|ZP_01546376.1| DNA primase [Stappia aggregata IAM 12614]
 gi|118438298|gb|EAV44932.1| DNA primase [Stappia aggregata IAM 12614]
          Length = 421

 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/127 (36%), Positives = 67/127 (52%), Gaps = 2/127 (1%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            Y     + +  + PIS +IG++V WDR KT+A  GD+WACCPFH E +PSFHC D +  
Sbjct: 22  RYSEAEKERVKSNNPISTIIGRHVTWDRAKTSANAGDFWACCPFHAENSPSFHCVDREHR 81

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIR 119
           Y CF C   GD  +FL  + G SF+E+++RL   A      P    + + + + +     
Sbjct: 82  YKCFGCGATGDQFTFLQNVEGLSFVEAMERLGGNAEAEPLSPEKIAEDKARAEDKRREQE 141

Query: 120 LIEVATD 126
               A  
Sbjct: 142 AFAEARR 148


>gi|37527569|ref|NP_930913.1| hypothetical protein plu3705 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787004|emb|CAE16078.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 1104

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 131/394 (33%), Gaps = 57/394 (14%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSK 59
             P   +  L   + +  L        ++         DY   CPFH+EKTPS   + +K
Sbjct: 3   RVPDTDLVHLKQTVSLLGLA------RKQGRPMKKRGEDYVLRCPFHNEKTPSMVISPAK 56

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP----------LPVVDPKIEK 109
             Y+CF C   G  L ++    G +   +++RL  +AG+P               P+ + 
Sbjct: 57  NLYHCFGCGAAGSVLDWVIQTEGVTLKIAIRRLRELAGLPDMDNAVVAASSLAALPESQA 116

Query: 110 KEKIQTDLIR-------LIEVATDFFHHSL-----------KNARDKRLHYYLDERGIDS 151
               +  L         L+    DF+H  L           +   +        + G   
Sbjct: 117 APLPRPKLADLDDDGQALLHQVIDFYHQHLLASPEAKAWLARRGLNHPELVNHFKLGYAG 176

Query: 152 HAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIR 211
           H       G  P       +HLR K  S   ++      D                  + 
Sbjct: 177 HHGIGGSAGLLPSKSSQEGQHLRDK-LSGLGVLRTTTRQDHFRGCVVVPVIGWAESASV- 234

Query: 212 SSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271
           +SRG+V+   GR       V              K+LY     L      +  +    ++
Sbjct: 235 ASRGRVLQLYGRRTQPDYKVLK---------DSPKHLY-----LPSPLAGVWNEAAMKAA 280

Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLG-TALTEYQLRLLWKL-SPRIVLCFDGDDPGLR 329
           + IIL E  +D ++   AG +NV+++ G        L  L      R+++ FD D+ G R
Sbjct: 281 AEIILCEALIDAMTFWCAGFRNVIAAFGVNGFNREHLDALQYHGVKRVLIAFDRDEAGDR 340

Query: 330 AAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
                 ++    L  G     V    G D + + 
Sbjct: 341 G---VANVAADLLEAGIEAWRVQFPPGMDANDYA 371


>gi|218265562|ref|ZP_03478826.1| hypothetical protein PRABACTJOHN_04537 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221454|gb|EEC94104.1| hypothetical protein PRABACTJOHN_04537 [Parabacteroides johnsonii
           DSM 18315]
          Length = 350

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 131/329 (39%), Gaps = 46/329 (13%)

Query: 51  PSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK 110
           PS   N+ KG + C++C  +GD  +F+S +    F E+ +RL     + +      IE+K
Sbjct: 1   PSLSVNEEKGSFVCYACGERGDVFAFVSKIEKVGFAEAAKRLTKE--LTIENGQLTIERK 58

Query: 111 EKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLR 170
           +                      +A        + +  +         +         L 
Sbjct: 59  DNK--------------------DAGALPERLSVVDSRLSVENEVFLAM---------LL 89

Query: 171 EHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
                        ++ G+          +   RNRL+FP+R   G+++ F  R LS  + 
Sbjct: 90  PAGSGCPELTPTWLDFGVGQSPFLVPERWKAMRNRLVFPVRDEEGRLVGFAARRLSDEDR 149

Query: 231 --VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
              KY+NS    L+ K + LY  + A   +++             + LVEGY DVL++  
Sbjct: 150 DKPKYINSETGELYRKSELLYGLYEAREAIRR----------EGSVFLVEGYKDVLAMHA 199

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           AG ++ V+  GTAL    + LL + +  + +  D D  G +A      +V   +  G  V
Sbjct: 200 AGFRHTVALCGTALCTGHIALLKRYTTSVRVMLDADKAGRKATDA---IVPTLVGEGMEV 256

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
             + L  G+DPDS  R  GK AF   + E
Sbjct: 257 VRIGLPEGDDPDSLFRRLGKEAFAAYVRE 285


>gi|242237764|ref|YP_002985945.1| zinc finger CHC2-family protein [Dickeya dadantii Ech703]
 gi|242239428|ref|YP_002987609.1| zinc finger CHC2-family protein [Dickeya dadantii Ech703]
 gi|242129821|gb|ACS84123.1| zinc finger CHC2-family protein [Dickeya dadantii Ech703]
 gi|242131485|gb|ACS85787.1| zinc finger CHC2-family protein [Dickeya dadantii Ech703]
          Length = 1086

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 107/704 (15%), Positives = 205/704 (29%), Gaps = 114/704 (16%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
                 ++ L   + +  +   Q     ++        Y   CPFH E TPS     SK 
Sbjct: 3   RMTPAELEQLKRGVSLRAVAQSQGHTLKKQGA----DSYVCRCPFHQENTPSCVITPSKN 58

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA--IAGVPLPVVDPKIEKKEKIQTDLI 118
            Y+CF C   G  L +L      ++ +++ RL     +   L             +  L 
Sbjct: 59  LYHCFGCGASGSVLDWLQHTERLTYPQTLLRLRELAGSASSLAAAPALSSPPAPPRQKLA 118

Query: 119 R-------LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD----SRY 167
                   L+     F+H SL  +  +   +           +  F+LG+A         
Sbjct: 119 DLDDDGQALLNQVIQFYHQSLLAS-AEAQQWLAGRGLAHPELVSHFRLGFAGHHGIGGSA 177

Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS--------RGQVIA 219
            L      +     +   AGL +    +    D FR  ++ P+           RG+V+ 
Sbjct: 178 GLLPSSSSQEGKRLREKLAGLGVLRSATRQ--DHFRGCVVMPVIGWSESASVAQRGRVMQ 235

Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279
             GR +     +    SP        K+LY     L      +  +    +SS +IL E 
Sbjct: 236 LYGRRVQPDHKI-LKGSP--------KHLY-----LPSPLAGVWNEDALKASSEVILCES 281

Query: 280 YMDVLSLCQAGVQN-VVSSLGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAIDL 337
            +D ++   AG +N   +      T   L  L      R+ + +D D+ G R A     +
Sbjct: 282 LIDAMTFWCAGYRNVTTAYGANGFTADHLAALQYHGVKRVQIAYDRDEAGDRGA---ASV 338

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSF-IRCYGKTAFEKLIVESLPLVDM------------ 384
               L  G     V    G D +++ +      +   L +E    +              
Sbjct: 339 AAELLEAGIEAWRVRFPPGLDANAYALNSGSPESALGLALEQAQWMGNGSGPGVVFSHET 398

Query: 385 ------------------------------LWKRETENRSFNTPDERAELEIHLKNCINH 414
                                                 R +     +      +      
Sbjct: 399 VVTDGREPSSLAAPAGVPAPMVAGELTASGDLLLTHGPRVWRVRGWQKNTVAEVMKVNVQ 458

Query: 415 IKDQKLRYYYSQAI-----RDR---LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
           ++D+     Y  ++     R R   +     +   E S   R   +     +QK    R 
Sbjct: 459 VRDESTGALYVDSLDLYSSRQRQGYVSAAAAELGCEASVIKRECGRVLLMLEQKQDDVRQ 518

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
                 +       +  EA  L  L+  P +      +LA           L +   +  
Sbjct: 519 AAEQAERAPAVTVSAEEEADALA-LLKSPDLAARIVDDLAACGVVGESTN-LLTGYLAAT 576

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT----------EANIVDVRQ 576
             +       + Q     G   L++ +   + +      +           E ++     
Sbjct: 577 SRKLDKPLAVLIQSSSAAGKSSLMEAVLGMMPEEERIQYSAMTGQSLYYLGETSLQHKIL 636

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
              +   + +    L   + + E +IA   + G+ E++  L++ 
Sbjct: 637 AIAEEEGVRQAAYALKLLQSDGELKIA---STGKNEQSGELVTR 677


>gi|76799604|ref|ZP_00781724.1| DNA primase [Streptococcus agalactiae 18RS21]
 gi|76585039|gb|EAO61677.1| DNA primase [Streptococcus agalactiae 18RS21]
          Length = 383

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 159/414 (38%), Gaps = 36/414 (8%)

Query: 216 QVIAFGGRTLSKGE----SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271
           +  AF GR  ++ +      KY NS  T +F+K   LY+   A   + K          +
Sbjct: 2   KSFAFSGRVWTQEDIDRNQAKYKNSRATPIFNKSYELYHLDKARAVINK----------A 51

Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAA 331
             + L+EG+MDV++  +AG++NVV+S+GTALT   +R L + + ++VL +DGD  G  A 
Sbjct: 52  HEVYLMEGFMDVIAAYRAGIENVVASMGTALTNEHVRHLKRFTKKVVLTYDGDRAGQNAI 111

Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391
            K+++L+         V+ V +    DPD F++      F++L+          +    +
Sbjct: 112 DKSLELL-----SDMTVDIVRIPNKMDPDEFLQANSAEDFKQLLENGRISNTEFYIHYLK 166

Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
             + +           +   I        +  Y   + + L       + +     R   
Sbjct: 167 PENTDNLQSEIAYVEKIAKLIAKSPSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHH 226

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
           ++ +       +   +Q  L +       +  E  L   L+NHP +L E      +  +D
Sbjct: 227 RSQQQASSSVQTSATVQ--LPQTGKLSAITKTEMQLFHRLLNHPYLLNEFRNR-DNFYFD 283

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
             E+Q L+  L                  +      +   +++R            E +I
Sbjct: 284 TTEIQVLYELLKESGE-------------ITSYDLSQESDKVNRTYYIILEEQLPVEVSI 330

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
            ++ +  ++A     + R L +Q + I +   Q   +G       LI+    + 
Sbjct: 331 GEI-EAVEKARDRLLKERDLRKQSQLIRQSSNQGDEEGALAALENLIAQKRNME 383


>gi|157695026|gb|ABV66102.1| DNA primase [Rickettsiella melolonthae]
          Length = 192

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/195 (36%), Positives = 101/195 (51%), Gaps = 7/195 (3%)

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
           V G+  SFL      SF+E+V  LA   G+ +P      E   K  ++L  L+E    F+
Sbjct: 2   VGGNAFSFLMEYEKLSFVEAVNSLAEQIGMEVPQHSKNQEIYYKASSNLYGLLEEVAQFY 61

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
              L+   +     YL +RG+     + F LGYAP +  +L +         E +  AGL
Sbjct: 62  AKELR--HNTLAINYLKQRGLSGEIAKRFNLGYAPAAWDTLLKTFN----DTENLFAAGL 115

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
           L+        YDRFR+R++FPIR  RG+VI FGGR L++ +  KYLNSPET LFHKGK L
Sbjct: 116 LVKKSEGQGYYDRFRDRILFPIRDRRGRVIGFGGRVLTQ-QEPKYLNSPETTLFHKGKEL 174

Query: 249 YNFFGALNYLQKSIR 263
           Y  +      ++  R
Sbjct: 175 YGLYETFQANRQVER 189


>gi|126640890|ref|YP_001083874.1| DNA primase [Acinetobacter baumannii ATCC 17978]
 gi|126386774|gb|ABO11272.1| DNA primase [Acinetobacter baumannii ATCC 17978]
          Length = 451

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 121/492 (24%), Positives = 212/492 (43%), Gaps = 60/492 (12%)

Query: 138 KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT 197
           K+L  Y  +RG+    I+ ++LGYAP+       HL +    + + ++   LI   +S  
Sbjct: 13  KKLKNYFKQRGLSDQTIQFWRLGYAPEDWQ----HLEKAFPYDIEGLKQLGLIRSSDSGR 68

Query: 198 SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNY 257
            +D  R+R+IFPIR  +G+V+ FGGR L+     KY+NSP++ +FHK + LY  +     
Sbjct: 69  DFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLLYGLYEGRKL 128

Query: 258 LQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI 317
                        ++  ++VEGYMDV++L Q G+   V++LGTA     L +L+K + RI
Sbjct: 129 ------------KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHLNILFKQNNRI 176

Query: 318 VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            + FDGD  G +AA + ++L L  L  G  + F +L    DPDS IR  G   F+KL+ +
Sbjct: 177 TIAFDGDVAGQKAARRTLELALPLLNDGRELKFFVLPNDHDPDSLIRREGVENFQKLLQQ 236

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQAIRDRLQQLF 436
           +  L D ++   T     +TP+ ++ +   L+     +      RY  +Q+ R++L    
Sbjct: 237 APLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLTQSFREKLGL-- 294

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                               R     S     S  ++ K        E   +  L++HP 
Sbjct: 295 ------------------GKRFTPQISHDASLSFNIQTKD-------EDFAIAILMHHP- 328

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            L   ++ L      +  L K+ + L   F E      +E+              ++   
Sbjct: 329 FLYIHFEGLRAYIPQDELLAKILAILNRIFDELP--DDQELATYYVLGACSSYCHEIADI 386

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           ++   + +        +V     +  AL  + R L ++ +     +          ++  
Sbjct: 387 MQRTNIQAL---TQAPEVADKLAKEYALGLQERYLRQKLKSKISLV----------ESRN 433

Query: 617 LISILHEVHIQI 628
           L   L+E+  QI
Sbjct: 434 LRQQLNELTKQI 445


>gi|325914964|ref|ZP_08177296.1| DNA primase [Xanthomonas vesicatoria ATCC 35937]
 gi|325914983|ref|ZP_08177315.1| DNA primase [Xanthomonas vesicatoria ATCC 35937]
 gi|325538857|gb|EGD10521.1| DNA primase [Xanthomonas vesicatoria ATCC 35937]
 gi|325538876|gb|EGD10540.1| DNA primase [Xanthomonas vesicatoria ATCC 35937]
          Length = 352

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1  MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
          M + +  ++ L   + +  ++ +YV   R        ++   CPFH+E +PSF    SKG
Sbjct: 1  MTHNKIDVEQLKAAVDLVAVVERYVQLRRTGK-----EHAGLCPFHNESSPSFTVIPSKG 55

Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAI 95
          F +CF C    D + FL A+ GC F E+  +L A 
Sbjct: 56 FVHCFGCGAHFDVIGFLMAITGCDFHEACVQLGAQ 90


>gi|251789531|ref|YP_003004252.1| zinc finger CHC2-family protein [Dickeya zeae Ech1591]
 gi|247538152|gb|ACT06773.1| zinc finger CHC2-family protein [Dickeya zeae Ech1591]
          Length = 1118

 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 131/386 (33%), Gaps = 48/386 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
                 ++ L   + +  +   Q     ++        Y   CPFH E TPS     SK 
Sbjct: 3   RMTPAELEQLKRGVSLRAVAQSQGHTLKKQGA----DSYVCRCPFHQENTPSCVITPSKN 58

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLI 118
            Y+CF C   G  L +L      ++ +++ RL  +AG    +             +  L 
Sbjct: 59  LYHCFGCGASGSVLDWLQHTERLTYPQTLLRLRELAGSASSLAAAPALSSPPVPPRQKLA 118

Query: 119 R-------LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD----SRY 167
                   L+     F+H SL  + + +  +           +  F+LG+A         
Sbjct: 119 DLDDDGQALLNQVIGFYHQSLLASPEAQQ-WLAGRGLNHPELVSHFRLGFAGHHGIGGSA 177

Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS--------RGQVIA 219
            L      +     +   AGL +    +    D FR  ++ P+           RG+V+ 
Sbjct: 178 GLLPSSSSQEGKRLREKLAGLGVLRAATKQ--DHFRGCVVMPVIGWAESASVAQRGRVMQ 235

Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279
             GR +     +    SP        K+LY     L      +  +    +SS +IL E 
Sbjct: 236 LYGRRVQPDHKI-LKGSP--------KHLY-----LPSPLAGVWNEEALKASSDLILCES 281

Query: 280 YMDVLSLCQAGVQN-VVSSLGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAIDL 337
            +D ++   AG +N   +      T   L  L      R+ + +D D+ G R A     +
Sbjct: 282 LIDAMTFWCAGFRNVTTAYGANGFTADHLAALQYHGVKRVQIAYDRDEAGDRGA---ASV 338

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFI 363
               L  G     V    G D +++ 
Sbjct: 339 AAELLEAGIEAWRVRFPPGLDANAYA 364


>gi|304393959|ref|ZP_07375883.1| virulence-associated protein E [Ahrensia sp. R2A130]
 gi|303293934|gb|EFL88310.1| virulence-associated protein E [Ahrensia sp. R2A130]
          Length = 358

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS-KG 60
                 +  L    PIS +IG++V++  +K+   KGD+WA C FH EK+PS H  D  K 
Sbjct: 3   RIDAHELARLKADTPISEIIGRHVNFCPKKSQPAKGDFWANCVFHGEKSPSLHVVDQGKN 62

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111
           F++CFSC  KGD ++FL   LG SF+++ + L    G          EK+ 
Sbjct: 63  FFHCFSCGAKGDAITFLQEHLGLSFMDAAKEL----GADPDRELTDDEKRA 109


>gi|217077378|ref|YP_002335096.1| DNA primase [Thermosipho africanus TCF52B]
 gi|217037233|gb|ACJ75755.1| DNA primase [Thermosipho africanus TCF52B]
          Length = 457

 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 102/546 (18%), Positives = 216/546 (39%), Gaps = 91/546 (16%)

Query: 86  IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145
           +E++++LA  AGV +        +            +     +   L +   K    YL 
Sbjct: 1   MEALKKLANEAGVKIEYSSSNSFQ-----QLYFNFYKEIHKEYMEKLFDE--KIALDYLF 53

Query: 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR 205
            RG     I+ ++ G++P +    ++  ++            +        +++D+F  R
Sbjct: 54  SRGFSEEEIKEYEFGFSPINSKIPQKIAQK----------LDIKSLKKFGFSTHDQFEGR 103

Query: 206 LIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKD 265
           LI PI++    VIAFGGR L +G+  KYLNS ET  F K K L+    A + ++      
Sbjct: 104 LIIPIKNEYSNVIAFGGRLLGEGQP-KYLNSYETDFFKKSKTLFLLDIAKDKIK------ 156

Query: 266 VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDD 325
               ++ F I+ EGY D ++  +A  +N V++LGT+ T++    + KL+  ++L FD D 
Sbjct: 157 ----TADFAIICEGYFDAIAFHRADFKNAVATLGTSFTKFHAFSIKKLTQNVILAFDTDS 212

Query: 326 PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDML 385
            G++AA ++I +++        V     ++ +DPD   +  G +     + E++P  + +
Sbjct: 213 AGIKAALQSIKILISMQ---FNVMVAGKTKEKDPDEIYKTQGSSGLYSFLKEAIPAEEFI 269

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
               ++N   N  +        +KN     ++   +    +   +++             
Sbjct: 270 PYVLSKNYDLNNSNAIPLYTREIKNWEKIFENFPEKLETFRKTAEKI------------- 316

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
                            S+  +  S+ K K        +  ++  L+N+P +        
Sbjct: 317 -----------------SKTSITVSVPKPKQKTNLPTLDEMVIYLLLNNPQV-------- 351

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            DI  +     +L           K F  E++ + L  +    +L ++++          
Sbjct: 352 -DIEINPKIFNELTQEFIKSLKNLKNFSFEKLSKDLQ-KYIENILNKMEKF--------- 400

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
                  ++ + Y   +      + L ++ EEI+K +   T     E+  +L+    E+ 
Sbjct: 401 -------EINEDYINTVKKKIEEKTLEKRIEEIDKYLNSAT----EEEKRVLLQTRMELV 449

Query: 626 IQIHQI 631
            ++ ++
Sbjct: 450 RKLKKL 455


>gi|124515194|gb|EAY56705.1| DNA primase [Leptospirillum rubarum]
          Length = 461

 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 114/496 (22%), Positives = 187/496 (37%), Gaps = 43/496 (8%)

Query: 94  AIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSH 152
             AG+PLP  +      +  +    ++       +  SL ++  ++   YL E R +   
Sbjct: 3   DQAGIPLPSGNG-----QDRRKACFQIFRETESIYRKSLSSSGAEQARKYLHETRRLKPV 57

Query: 153 AIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRS 212
            +E F LG++          L +      K       +       S + FRNR++ PIR 
Sbjct: 58  TMERFGLGWSMPGS------LLKSMAPSRKKEAEEYGLLKQGPGGSREFFRNRIMVPIRI 111

Query: 213 SRGQVIAFGGRTLSKG-ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271
             G  +AFGGR L    +  KYLNSPE   F K + L+    A   ++K  R        
Sbjct: 112 ENGATVAFGGRVLPGNAQGPKYLNSPEHPFFRKKEILFGLDQAGPAIEKKRR-------- 163

Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAA 331
             +++VEGY DV++L +AGV+ VV+ LGTALT+  L  L +L+  +V+ FDGD  G  A 
Sbjct: 164 --VLVVEGYFDVMALSEAGVEAVVAPLGTALTQAHLIHLSRLADEVVVVFDGDRAGQTAI 221

Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391
            +  D  +        +    L  G+DPD +IR  G+  F + I +++PL D +      
Sbjct: 222 ARLADRFVLDSR--ISIRAFSLPEGKDPDEWIREVGRDFFLESIEKAIPLADFVVDLFDI 279

Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
                    R  L     +    I D +   ++        +                  
Sbjct: 280 QLKSADATTRNHLLESFYDLAKRIPDPEAIDHFLSRGASVFRINKDLLAQGLFREESLSP 339

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN--HPAILQEQYQELADIR 509
           +    ++ +  S                  L E  L+L L+     ++       L+   
Sbjct: 340 REIPRQNSRETSSNR--------------HLMERNLVLELVRLWTDSLDPHPSDRLSPGD 385

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ--LDRQVRDAGLWSATT 567
           +D      L +F+   +   K          L E    E+  Q  LDR+ R   L     
Sbjct: 386 FDFLSSGSLLTFVRDLWKNGKTNPETVRDMILKEPLLAEVWMQLPLDRETRPRRLEDLVF 445

Query: 568 EANIVDVRQGYQQALA 583
             + +  R+    AL 
Sbjct: 446 RVSRMSKRERLSAALK 461


>gi|206603676|gb|EDZ40156.1| DNA primase [Leptospirillum sp. Group II '5-way CG']
          Length = 461

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 117/496 (23%), Positives = 193/496 (38%), Gaps = 43/496 (8%)

Query: 94  AIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSH 152
             AG+PLP  +         +    ++   A   F  SL ++  ++   YL E R +   
Sbjct: 3   DQAGIPLPSGNGHD-----RRKACFQICREAESIFRKSLSSSGAEQARKYLHETRRLKPV 57

Query: 153 AIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRS 212
            +E F LG++            ++             +         + FRNR++ PIR 
Sbjct: 58  TVERFGLGWSMPGALLKSMPYLKQK------EAIEYGLLKQVPGGPREFFRNRIMVPIRI 111

Query: 213 SRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271
             G  +AFGGR L       KYLNSPE   F K + L+    A   ++K  R        
Sbjct: 112 ENGASVAFGGRVLPGNSQGPKYLNSPEHPFFRKKEILFGLDQAGPAIEKKRR-------- 163

Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAA 331
             +++VEGY DV++L +AGV+ VV+ LGTALT+  L  L +L+  +V+ FDGD  G  A 
Sbjct: 164 --VLVVEGYFDVMALSEAGVEAVVAPLGTALTQSHLIHLSRLADEVVVVFDGDKAGQTAI 221

Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391
            +  D  +        +    L  G+DPD +IR  G+  F + I +++PL D +      
Sbjct: 222 ARLADRFVLDSR--ISIRAFSLPEGKDPDEWIREVGRDFFMESIEKAIPLADFVVDLFDI 279

Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
                    R  L     +    I D +   ++             +   +    G + +
Sbjct: 280 QLKTADTTTRNHLLESFYDLAKRIPDPEAIDHFLSR-----GASVFRLNKDLLAQGLFRE 334

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN--HPAILQEQYQELADIR 509
           ++   R+  G   R         ++S    L E  L+L L+     ++     + L+   
Sbjct: 335 ESLSPRETPGQKSR---------EMSSNRDLMERNLVLELVRLWTDSLDPHPSERLSPGD 385

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ--LDRQVRDAGLWSATT 567
           +D      L +F+   +   K          L E    E+  Q  LDR+ R   L     
Sbjct: 386 FDFLSSGSLLTFVRELWRNGKTNPDIVQDMILKEPLLAEVWMQLPLDRETRPRRLEDLVF 445

Query: 568 EANIVDVRQGYQQALA 583
             + +  R+    AL 
Sbjct: 446 RVSRMSKRERLSAALK 461


>gi|317126225|ref|YP_004100337.1| DNA primase catalytic core domain [Intrasporangium calvum DSM
           43043]
 gi|315590313|gb|ADU49610.1| DNA primase catalytic core domain [Intrasporangium calvum DSM
           43043]
          Length = 499

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 127/386 (32%), Gaps = 53/386 (13%)

Query: 5   RDFIK--DLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
              +    +    PI+ ++    VD   R        +  CCPFHD+ +PS   +     
Sbjct: 4   PSTVDFARIRSEHPIAEVVAASGVDLQPRG-----HGWVGCCPFHDDSSPSMTVDAIPDR 58

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL---- 117
           ++CF C   GD + F+  + G    ++V  L    GV      P      + +  L    
Sbjct: 59  FHCFGCGATGDVVDFVGRMHGLGVRDAVAFL-DTGGV------PTAAPAARPRLRLVRDH 111

Query: 118 ----------IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK------LGY 161
                       +  +A +     L +                     +         GY
Sbjct: 112 DRPPVTPDRAFEINALAWNH----LGSPTAGWFASKFLWHARGIDLTALRAETGVELAGY 167

Query: 162 APDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFG 221
           A     SL + LR  G S+++++   L        +  D  R RLIFPI    G++  F 
Sbjct: 168 ASHDWTSLTDRLRADGVSDDELLALDLSQRARTG-SLIDTLRGRLIFPITEPDGRIRGFI 226

Query: 222 GR-TLSKGESVKYLNSPETILFHKGKNLY---NFFGALNYLQKSIRKDVRRNSSSFIILV 277
           GR T     + KY N   T +  KG  LY   +   A +     +   +   + +     
Sbjct: 227 GRDTTGNPPAPKYRNPTRTPVHDKGDVLYRATHHRLAADGHVVVVEGVLDALALTAAAAE 286

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           EG  D ++        V +S  T  +    ++L        +  DGD  G     +   L
Sbjct: 287 EGLTDRIAA-------VTASGVTVSSAQAEQVLALSDNPPRIALDGDQAGRDGTDR--WL 337

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFI 363
               L          L  G DP  ++
Sbjct: 338 TALSLDRDRPTLVTTLPEGTDPAEWL 363


>gi|330040533|ref|XP_003239946.1| DNA primase [Cryptomonas paramecium]
 gi|327206872|gb|AEA39048.1| DNA primase [Cryptomonas paramecium]
          Length = 675

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 139/380 (36%), Gaps = 40/380 (10%)

Query: 25  VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL---L 81
           V   ++        Y   CPFH EKTPSFH    KG YYCF C   G+  +F+  +    
Sbjct: 51  VKIKKKGK----TSYVTLCPFHQEKTPSFHIEQEKGLYYCFGCGESGNLYTFVKKINQKK 106

Query: 82  GCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT------DLIRLI--EVATDFFHHSLK 133
              F    ++   +    L   +   +K  KI            +   +   DF+     
Sbjct: 107 HTRF----EK--DLIHDVLYYFNQTKKKFSKINRNNSHLVSYQSVFFIKTECDFYEKFFH 160

Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193
                 L+            +      Y               G +   +I        +
Sbjct: 161 RDMKLTLYTETRGLSNSILKLYKIGYSYVFKKNDLNIYGF---GLNTSNLISETNYRSIN 217

Query: 194 NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPETILFHKGKNLYNFF 252
               S     N+++ PI + +G  I FG R+     +  KY+NS ++ +F K + +Y+ +
Sbjct: 218 LLEKSVQ---NKVVMPIFNEKGIAIGFGKRSTENLTKISKYINSQDSPIFKKQRCIYSSY 274

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
                 +   +           ILVEGYMD  +L Q G++  ++SLGT +    ++ L+ 
Sbjct: 275 HFKIVNKFKPKIG---------ILVEGYMDFTNLTQNGIRFCMASLGTNVNNSHIQKLFS 325

Query: 313 LSPR--IVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
            +    I++ FD D PGL +    I +L         + +F   +  +DPD  +   G  
Sbjct: 326 FNKNKHIIISFDCDRPGLASTRTIISNLFYFIKNYQFKTSFSYFNVHKDPDELVYFKGGN 385

Query: 370 AFEKLIVESLPLVDMLWKRE 389
            F    +  +    +  +  
Sbjct: 386 FFTTFTLNYIKPGLIWIETL 405


>gi|126640891|ref|YP_001083875.1| DNA primase [Acinetobacter baumannii ATCC 17978]
 gi|126386775|gb|ABO11273.1| DNA primase [Acinetobacter baumannii ATCC 17978]
          Length = 165

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 25  VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS 84
           +   +         Y  CCPFH EKTPSFH    K +Y+CF C   G+ + FL  +   +
Sbjct: 1   MKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQYYHCFGCQANGNAIRFLMDIDNRN 55

Query: 85  FIESVQRLAAIAGVPLPVVDPKIEKKEKIQT 115
           FI+ ++ L++  GV LP  +   +K    + 
Sbjct: 56  FIDVMKELSSNTGVELPKDNTDNKKLSYTRQ 86


>gi|23013685|ref|ZP_00053553.1| COG0358: DNA primase (bacterial type) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 314

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 111/299 (37%), Gaps = 13/299 (4%)

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
           ++     L PG  + F  L   EDPDS I+  G  A   ++  +  +V++ W+   ENR 
Sbjct: 12  LERAFPILKPGLSLRFAALPSPEDPDSLIKARGPAAMATVLDSAQAMVEVAWRLALENRP 71

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
            +TP+ RA L+  L      I D+ +R+ Y    R + +  F+           + K + 
Sbjct: 72  LDTPEARALLDKDLAEKAFSIADEAVRFQYLATFRQKAKDHFRPKWEPRKSGSGFGKPSG 131

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSL----REAALLLTLINHPAILQEQYQELADIRY 510
           R         +     L      + P      +E  +L  +++HP ++    + L +  +
Sbjct: 132 RFGGPPQAPLKGPDGLLPGAGRPRPPQPNSGAQEWMMLALVLDHPRLMDSIGERLGETTF 191

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            +  L  L   +       +    + +   L   G+ E+L        +  L +   + +
Sbjct: 192 TDKTLDNLRRGILKHLGAARDLDADGLATHLRTDGYSEILDHFL-DTNERRLRALRGDLS 250

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             + R  ++    LY R        +++   +++  A+     TA   S    V  Q  
Sbjct: 251 TEEARTHWEHVYNLYTR--------KDLLADVSEANAELAQGPTAASWSRFEAVKKQQQ 301


>gi|282890658|ref|ZP_06299181.1| hypothetical protein pah_c022o283 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499655|gb|EFB41951.1| hypothetical protein pah_c022o283 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 463

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 107/492 (21%), Positives = 193/492 (39%), Gaps = 48/492 (9%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
             YL +RGID   I+ FK+G+AP     LR+ L  +  S++ ++EAGL+I+        D
Sbjct: 1   MQYLYKRGIDLAFIQHFKIGFAPP-FGMLRKVLHARSISDDAMLEAGLIIETKEGKKK-D 58

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETILFHKGKNLYNFFGALNYLQ 259
            F +R++FPI    G VI F GR   +     KY+N+ ET LF K + L+        + 
Sbjct: 59  FFYDRILFPIHHPTGGVIGFSGRKFKEETFGGKYVNTAETPLFKKSRVLFGLNYCRKRIA 118

Query: 260 KSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVL 319
           K  R           I+VEG +D L L  +G    V+  GTA  E  ++ L +L  ++V 
Sbjct: 119 KERRA----------IIVEGQVDALRLIYSGFNMTVAGQGTAFGEGHVKELMQLGVQVVY 168

Query: 320 CF-DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES 378
              D D  G  AA     +       G  V  V L  G DPD F+R  G  +F+ L+ +S
Sbjct: 169 LALDPDGAGQEAA---AKIGNLFQKEGVDVKIVALPLGMDPDIFLREKGPESFQILLQKS 225

Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438
           +  +  L    ++  +  +P  ++EL   +   I       + +   + +   +Q    +
Sbjct: 226 VDYLSFLVTHLSKKFNSASPAGKSELVQTVTEQIQKWNHPVMVHESLRQLAHLMQV--PE 283

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI----NH 494
            +       R      +     G + ++               + E  LL  ++     H
Sbjct: 284 NMVNQGVLPRSSHAFMKKGASIGTAAQVDPD-----------RILECDLLRWMLLMGETH 332

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
           P  ++     L    + +    +L++     +  QK      +   + +     L+ ++ 
Sbjct: 333 PHFIEMVCLNLKVEDFYHLVCGRLFTAFLEGYKNQKVPDLLSLAIAIDDEEGQTLISEIL 392

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            +  +             D  +GY +        R   + +EEI+ +I   + +   ++ 
Sbjct: 393 EKKINK------------DKAEGYFKETVQRILDRNWMKMREEIKMKIQ--SGQLSDDEA 438

Query: 615 AILISILHEVHI 626
             L     E+  
Sbjct: 439 LDLAKRFDELKR 450


>gi|225629744|ref|ZP_03787698.1| DNA primase [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591402|gb|EEH12488.1| DNA primase [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 295

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 81/317 (25%), Positives = 134/317 (42%), Gaps = 34/317 (10%)

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
           SPE+ LF KG+NLY    AL+ ++K             I +VEGYMDV++L QA + N V
Sbjct: 1   SPESQLFKKGENLYGLNFALSEIRKK----------QHIFVVEGYMDVIALHQAEISNTV 50

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           + LGTA++  Q++ LWK +  I +C DGD  G  AA +  +L L  L PG  + FV L  
Sbjct: 51  APLGTAISAEQIKNLWKFAKEISICMDGDSAGRHAATRVAELALLILEPGYTLKFVTLPS 110

Query: 356 GEDPDSFIR--CYGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNTPDERAELEIHL 408
            +DP        Y K      +  S  L              +N     P++ + LE   
Sbjct: 111 NKDPYDICNELEYKKEDVLTALDHSTKLHSEYLWHHMIDSNLQNYEKLAPEKYSILEHKF 170

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              +N I +  +R YY     ++         +E     +    N++    KG       
Sbjct: 171 MEYVNTISNSSIRRYYRDYFYNK--------SSELRSSFKKQIFNSKTGATKGEYLHNKS 222

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDF 526
             L++ + +      +A +L   +  P IL     +++ +   + N E+++L   +    
Sbjct: 223 PELIEAEQN------QAVILRIAVEFPEILNRPIFFEQFSHFEFTN-EMKRLQQRVIDVI 275

Query: 527 VEQKYFLPEEIHQRLCE 543
             +     E + Q L +
Sbjct: 276 SNKSKLDIEALLQVLKQ 292


>gi|260892593|ref|YP_003238690.1| zinc finger CHC2-family protein [Ammonifex degensii KC4]
 gi|260864734|gb|ACX51840.1| zinc finger CHC2-family protein [Ammonifex degensii KC4]
          Length = 407

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 117/356 (32%), Gaps = 28/356 (7%)

Query: 10  DLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS-KGF-YYCFS 66
           +L   + + ++   Y V+  +   N     ++  CP H EKTPSF   ++ +G  + CF 
Sbjct: 11  ELAREVSLLDVARAYGVELKKVGKN-----WFGLCPLHHEKTPSFTVYETPRGLRWKCFG 65

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRL-AA-IAGVPLPVVDPKIEKKEKIQTDLIRL--IE 122
           C   GD +  ++ L   S +E+ ++L A    G   P   P    +E+ Q   + +  +E
Sbjct: 66  CGEGGDVIDLVAKLEALSPLEAARKLVADYRYGWT-PAPAPASRPREEKQATELGVAPLE 124

Query: 123 VATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           V    +   L       R    L  RG+   AIE       P  R + +   R       
Sbjct: 125 VRDAVYRELLDALDLLPRHRENLKARGLSDAAIERNMYRSLPSPREARQVAARLAKN--- 181

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
               AG+     +  +         + P+R   G+V     R           N  + + 
Sbjct: 182 -YDLAGVPGFYRDGDSWTFTTCRGFLIPVRDVAGKVQGLQVRLDEP------KNGGKYVW 234

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F          GA                   + L EG +      +      ++  G +
Sbjct: 235 FSSAGKPSGT-GARTAAH-VATPLSGSFPRRRLWLTEGPLKADVAAEYLGVRFLAVPGVS 292

Query: 302 LTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAYKAID-LVLCHLIPGNRVNFVLLSR 355
           +    + ++       +VL FD D        +A++ L       G  +       
Sbjct: 293 VWRDAVEVVKALRPREVVLAFDADQATNEGVARAVEGLAAVLRDAGLELRRASWPP 348


>gi|167010406|ref|ZP_02275337.1| DNA primase [Francisella tularensis subsp. holarctica FSC200]
          Length = 435

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 97/398 (24%), Positives = 175/398 (43%), Gaps = 22/398 (5%)

Query: 197 TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALN 256
             YDRFR R++FPIR+ +G VIA+GGR     + VKY+NSPET++F K   LY  +    
Sbjct: 26  NLYDRFRGRVMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPETLVFQKNNILYGLYEYRE 85

Query: 257 YLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR 316
             +K    D+   S   +++VEGYMDV+ L Q G    V++LGTA +    ++L++ +  
Sbjct: 86  --RKKQYPDLINQS---LVVVEGYMDVVGLAQHGFYAAVATLGTAFSPNHAKILFRETSS 140

Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376
           ++LCFDGD+ G +AA + I ++L  L    ++  + L   +DPD +I+ YG   F   + 
Sbjct: 141 VILCFDGDEAGQKAALRTIKILLPMLDGNKKLKILTLPDKDDPDDYIKKYGLERFLTALD 200

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            SL + D +     + +     + +AE+  +LKN +  ++D       +  I D++    
Sbjct: 201 NSLAVADFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDNIYSESITATIADKIGIKV 260

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           +++                 + +K  +  + +   ++ K   K  L E  +L  L  + A
Sbjct: 261 EQFKNLL-------------KIRKQTTLNVNRQQNIQQKKLAKNLLLEEFVLAELFVNIA 307

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE--IHQRLCER--GFGELLKQ 552
             +          +  ++   + +       E      E   + Q L E    + E L +
Sbjct: 308 DFRILQHTNDFEIFATSKNLDILAKSLKILKEDSSNQIEAVILIQLLAEDYPDYREYLFE 367

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
           L              +     +    ++      + RL
Sbjct: 368 LLSYGIRNTQKKYAEDKYQEQMFVMLKRVENSSVKKRL 405


>gi|121583525|ref|YP_973951.1| zinc finger, CHC2-family protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120596775|gb|ABM40209.1| zinc finger, CHC2-family protein [Polaromonas naphthalenivorans
           CJ2]
          Length = 2510

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 143/393 (36%), Gaps = 52/393 (13%)

Query: 8   IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG----FY 62
           I DLL  +P+  ++ +  ++ +RR          A CPFH +  PS +   + G     Y
Sbjct: 6   IGDLLAKVPLEEVVTRLGIETERRGGVT-----RALCPFHQDTRPSLNLYSADGNSPAHY 60

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +CF+C   G  +  +  + G  F+ +VQ LA    +        I  +   +       E
Sbjct: 61  HCFACGAHGIAIDLVKQVEGLEFLPAVQWLARQFSIRP------IRNQASRRAGRAGASE 114

Query: 123 VATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDS-------------RYS 168
            A +F         D ++   + DERG D   +    L                   R  
Sbjct: 115 TAQEFAQRIFNARHDVEQFQSWCDERGFDPAFLHGQGLRCITRGVLVESLQAEPVGERAG 174

Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRG-----QVIAFGGR 223
           L + L+  G  +     +       +    +    +     I   RG     +V+ F GR
Sbjct: 175 LIDELQSLGLIKRLRSYSPAAQGKLDLLDQFQDCFHDGRVVIPIRRGEAKRTEVVGFAGR 234

Query: 224 TLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV 283
            L             T  F K + L+N   A   + ++++     N S+ + LVEG++D 
Sbjct: 235 ALQSAPPEGVPKYLLTPGFEKSEYLFNEPEAFRAVAQALKN----NESARLYLVEGFLDA 290

Query: 284 LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI--------VLCFDGDDPGLRAAYKAI 335
           L L   G    V+ +G +L + Q   L KLS ++         +  D D  G   A +  
Sbjct: 291 LRLQSLGQP-AVALMGISLGKGQFERLTKLSQKMPGTAPLAYCIFLDNDPAGFGGADRLA 349

Query: 336 DLVLCHLIPGNRVNFVLLSR----GEDPDSFIR 364
             +L       R   +        G+DPDS +R
Sbjct: 350 RGLLGLTGVDMRWVGMPWRTEPSLGKDPDSSLR 382


>gi|218670804|ref|ZP_03520475.1| DNA primase [Rhizobium etli GR56]
          Length = 163

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/157 (45%), Positives = 104/157 (66%), Gaps = 2/157 (1%)

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ--KYFLPEEIHQRLCERGFGELLK 551
           HPA++ + Y E+A I YD+ ELQ+LWS +          +   + + +RL   GFG L+K
Sbjct: 1   HPALMIDDYDEIAAIEYDSRELQRLWSAVLGAAAAVAGPHLTRDYLTERLEFEGFGPLIK 60

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            LD+QVR+A LW+AT EA + D R+GY+QALA +KR + L RQK E+E++IA  T  G+ 
Sbjct: 61  SLDQQVRNARLWTATEEAAMEDAREGYRQALAFHKRAKALRRQKMELEREIALATEAGDG 120

Query: 612 EKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           E    LI    EVH++  ++E+QEA+I+GFG +SGR+
Sbjct: 121 EAIVQLIRAQQEVHLEGVRLENQEAIIDGFGVLSGRV 157


>gi|262067817|ref|ZP_06027429.1| putative toprim domain protein [Fusobacterium periodonticum ATCC
           33693]
 gi|291378541|gb|EFE86059.1| putative toprim domain protein [Fusobacterium periodonticum ATCC
           33693]
          Length = 807

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 87/500 (17%), Positives = 177/500 (35%), Gaps = 45/500 (9%)

Query: 41  ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC-----SFI-ESVQRLAA 94
              P H++  PS H  +    +YCFSC+   D       L         FI E+V  LA 
Sbjct: 34  CLNPEHEDHNPSMHFWEENNIFYCFSCNYTCDIFDLAHLLENKPICGPDFIEENVFYLAR 93

Query: 95  IAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAI 154
             G P   +  ++  +E  +  + R+++  +D+   +           +L++R I     
Sbjct: 94  KYGFPYEHLQKELTAEEIKKHTMYRIMKSFSDYITKN-------ANKNFLEKRNITEETA 146

Query: 155 EMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR 214
           +   +G   +     +  L     +  + I   + I      T +    N+LIF I+   
Sbjct: 147 KELNIGSVVNFEDCKKYLLNNFKLNNIEEILKEVGI------TKFKVNENKLIFIIKDKF 200

Query: 215 GQVIAFGGRTLSK-GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273
           G+  +F  R ++    + KY+N  ET +++K +  + +               + N    
Sbjct: 201 GRPCSFVSREMNDVVNNPKYINGAETEIYNKSEIFFGWSDIKK----------KFNPLGI 250

Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL--WKLSPRIVLCFDGDDPGLRAA 331
           I++VEGY+D ++  Q G +NVV+    + T+  +  L   K   +I +  D D  G +  
Sbjct: 251 ILIVEGYIDFVTAYQKGFRNVVALGSASFTDEHIAFLEKNKNINKIAIALDNDKTGNKRT 310

Query: 332 YKAIDLVLCHL-IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390
              I+            V    +S+ +D D  +           I +   L +   K+  
Sbjct: 311 DSLIERFKNKKLNKDYVVAINKMSQYKDLDEILNNSEDDLTLIDIYDIYNLFEYELKKLK 370

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLR-------YYYSQAIRDRLQQLFQKYITEH 443
           E     +      + I  ++    +++++ R        Y  + I ++++   +     +
Sbjct: 371 EGPFEESIIFDKFVSIIAQSKSPKLREEQARILSKYLNEYSYKTILEQIEYTLESKNELY 430

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
               +     A    ++ P   L     +K          E        +      E  +
Sbjct: 431 KQEVKKLIDYASKNVERNPDNLLTIIEAIKEDYEDINKKFEKKKTDIFESGLEFFDEFER 490

Query: 504 -----ELADIRYDNNELQKL 518
                +L +I +    L  L
Sbjct: 491 NKSIYDLFNIDFQIPWLDDL 510


>gi|237750982|ref|ZP_04581462.1| DNA primase [Helicobacter bilis ATCC 43879]
 gi|229373427|gb|EEO23818.1| DNA primase [Helicobacter bilis ATCC 43879]
          Length = 113

 Score =  118 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 7/95 (7%)

Query: 3   YPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            P++ I+++     + N+  +  ++  +   N     Y A CPFH E   SF  N  K  
Sbjct: 25  IPKERIQEVKDK-DLVNVCERLGIELQKNGRN-----YVAICPFHIENKASFTINTQKNL 78

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
           +YCF C   GD +     +   +F++++  L+ +A
Sbjct: 79  WYCFGCGEGGDTIKLYMKMKNVNFVKAIDELSTLA 113


>gi|309783308|ref|ZP_07678019.1| DNA primase [Ralstonia sp. 5_7_47FAA]
 gi|308917940|gb|EFP63626.1| DNA primase [Ralstonia sp. 5_7_47FAA]
          Length = 328

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 109/314 (34%), Positives = 155/314 (49%), Gaps = 16/314 (5%)

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           LI  +  A  F+   L+ A   R   YL  RG+       + LGYAP    +LRE     
Sbjct: 5   LIDHLTQAASFYRGQLRAAH--RAVAYLKARGLRGDIAARYGLGYAPAGFQALREAF--P 60

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +++  + +AGL +  ++    YDRFR+R++FPI    G VI FGGR L      KYLNS
Sbjct: 61  NYNDRALEKAGL-VAVNDGGRRYDRFRDRIMFPILDDAGSVIGFGGRVLEGD-GPKYLNS 118

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F KG+ L+    A   +           ++    +VEGY+DV+SL Q GVQN V+
Sbjct: 119 PETEVFQKGRVLFGLTQAAEAIA----------ATGTAYVVEGYLDVVSLAQHGVQNAVA 168

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +  L  L+ R++ CFDGDD G RAA +A+D+ L H+     V+F+ L R 
Sbjct: 169 TLGTATTGQHVERLLGLAKRVIFCFDGDDAGRRAAVRALDVCLPHVTDAADVSFLFLPRD 228

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPDS++R  G  AF  L +E+  L         +       + RA L       +  I 
Sbjct: 229 HDPDSYVRAKGGDAFNDLALEASSLEGFFLASAMQGCQLEYAEGRARLVATAAPRLQQIN 288

Query: 417 DQKLRYYYSQAIRD 430
              +      AI  
Sbjct: 289 APAMLCRILTAIAG 302


>gi|75761905|ref|ZP_00741830.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74490613|gb|EAO53904.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 335

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 130/354 (36%), Gaps = 20/354 (5%)

Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYK 333
           ++L EGY DVL+  ++GV+  V+++GTALTE Q +LL +    +VLC+DGD  G  A  K
Sbjct: 1   MVLFEGYADVLAAVKSGVEEAVATMGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMK 60

Query: 334 AIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR 393
           A  L    L  G +V    L    DPD +++ YG TAFE L+  S+  V          +
Sbjct: 61  AGQL---LLKVGCQVKVTSLPDKLDPDEYVQQYGTTAFENLVKSSVSFVGFKINYLRLGK 117

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
           +      + E    +   ++ ++D      Y +++        +  + +   Y +  K  
Sbjct: 118 NLQDESGKEEYVKSVLKELSLLQDAMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQ 177

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
            +   Q     +++Q+              E  ++  ++    +       +    +   
Sbjct: 178 QKQIKQVAKPSQVVQT----KPKLTGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTE 231

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           E + +   L++ + +            L +     ++  +      +       E     
Sbjct: 232 EHKGILYELYAYYEKGNEPSVGTFLSWLSDEKLKNIITDI------STDEFINPEYTEE- 284

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                 Q      R      +K EI  ++ Q+      E     ++ L     +
Sbjct: 285 ----VLQGHLETLRRHQEKLEKMEIIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 334


>gi|283479881|emb|CAY75797.1| DNA primase [Erwinia pyrifoliae DSM 12163]
          Length = 848

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 93/555 (16%), Positives = 169/555 (30%), Gaps = 69/555 (12%)

Query: 53  FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKI 107
              + +K  Y+CF C   G  L +L      S  ++V+RL A  G     VPL       
Sbjct: 1   MVISPAKNLYHCFGCDAGGSVLDWLMHSEXLSLRKAVERLRAELGENPALVPLVAAAEPD 60

Query: 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167
              +        L+E  T F+H +L NA  +   Y    R      +  FK G+A     
Sbjct: 61  VFADDEAGR-QALLERVTAFYHQTLLNAP-EAXAYLEKRRLHHPELVAAFKPGFA---NR 115

Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
           +L   L  K   +   I A L   G    + ++ F   L+ P+    G++    GR + K
Sbjct: 116 TLAYRLPPKKLKDGAAIRARLQALGIMRESGHEHFTGXLVVPVADLHGRIREVYGRKIDK 175

Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
            +                 +LY     L      +  +     S  +IL E  +D +S  
Sbjct: 176 PQRGM------------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFW 218

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
            AG +NV ++ G        R  +      ++++ FD D  G  AA   + L    +   
Sbjct: 219 VAGWRNVTAAYGVNGFTDDHRRAFAQHEXKQVLIAFDNDAAGNXAA---VRLAAELVQMQ 275

Query: 346 NRVNFVLLSRGEDPDSFIRC--YGKTAFEKLIVESLPLVD------MLWKRETENRSFNT 397
                ++   G D + ++      +  F  L+  + P+ D      M+        + + 
Sbjct: 276 IDTFRIVFPAGMDANGYLCRVAEPEREFGLLVESAQPMRDAVTVPEMVVPETLPALAASP 335

Query: 398 PDERAELEI---------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D    +E                 ++          +     Q +       F   +  
Sbjct: 336 SDPGVVVERGEAGEVLIGLGAQRWRVRGLAQVKPGAAVMKLNVQVLXRESGAAFADSLDL 395

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQS-------------SLVKGKLSKKPSLREAALLL 489
            S   R                 L +S                  + + + + +E A  L
Sbjct: 396 ISARSRGGXVRQAAAXLGLAEDDLRRSLGKVLLALENLTAQPQPEESAPQLTEQERAAAL 455

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            L+  P +      +LA           L +   +    +       + Q     G   L
Sbjct: 456 ALLRCPDLSGRITDDLAACGVVGES-GNLLAAYLAATSRRLERPLAVLIQSSSAAGKSSL 514

Query: 550 LKQLDRQVRDAGLWS 564
           +  +   + +     
Sbjct: 515 MXAVLGLMPEEERMQ 529


>gi|58699734|ref|ZP_00374388.1| DNA primase [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533750|gb|EAL58095.1| DNA primase [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 337

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 141/361 (39%), Gaps = 39/361 (10%)

Query: 281 MDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340
           MD ++L QAG+ N V+ LGTA++  Q++ LW+ +  I +C DGD  G  AA +  +L L 
Sbjct: 1   MDTIALHQAGISNAVAPLGTAISAEQIKNLWRFAKEISICMDGDSAGRHAATRVAELALP 60

Query: 341 HLIPGNRVNFVLLSRGEDPDSFIR--CYGKTAFEKLIVESLPLVDMLWKRE-----TENR 393
            L PG  + FV L   +DP        Y K      +  S  L              +N 
Sbjct: 61  ILEPGYTLKFVTLPSNKDPYDICNELEYKKEDVLTALDHSTKLHSEYLWHHIIDSNLQNY 120

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
               P++ + LE      +N I +  +R YY     ++         +E     +    N
Sbjct: 121 EKLAPEKYSILEHKFMEYVNTISNSSIRRYYRDYFYNK--------ASELRSSFKKQIFN 172

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE--QYQELADIRYD 511
           ++ R  KG         L++ + +      +A +L   +  P IL     +++ +   + 
Sbjct: 173 SKTRATKGEYLHNKSPELIEAEQN------QAVILRIAVEFPEILNRPIFFEQFSHFEFT 226

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
           N E+++L   +      +     E + Q L +                  +     + ++
Sbjct: 227 N-EMKRLQQRIIDVISNKNKLDKEALLQELKQFNV---------------IKYVFEKTSV 270

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           ++ +   +++  +     +L ++   + K+  +    G  +    LI  + ++   I ++
Sbjct: 271 LNSQLNERKSAEIVWNNIVLLKELNALRKERTEARLSGNLDLEERLIEQIEQIESSIQEM 330

Query: 632 E 632
           +
Sbjct: 331 Q 331


>gi|310830396|ref|YP_003965497.1| DNA primase [Paenibacillus polymyxa SC2]
 gi|309249863|gb|ADO59429.1| DNA primase [Paenibacillus polymyxa SC2]
          Length = 486

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/492 (13%), Positives = 150/492 (30%), Gaps = 53/492 (10%)

Query: 6   DFIKDLLIH---IPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKT-PSFHCNDSKGF 61
            FI+ L+     IP+S ++G  +   R+ +      Y   CPFH+ K   SF  +D K  
Sbjct: 5   QFIEQLIDQARSIPMSTVVGSRMSLIRKGS-----SYKGLCPFHNGKKIGSFDVSDRKQI 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV-------PLP----VVDPKIEKK 110
           + CFSC V GD + F+S   G  ++ +  R+A   G+                   +EK 
Sbjct: 60  WKCFSCGVGGDTIKFVSLYDGIDYLAAAFRVALECGIISSWEYDEFYANRRYRKHDVEKI 119

Query: 111 EKIQTDL-----------IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159
           ++    L              ++     F  S   +   + H   +    +    +    
Sbjct: 120 QRRYEALDKEKFQTNIADNETLDQVFRIFIKSCDLSEAHKNHLLKERGLTEEEISKGLYF 179

Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR-------LIFPIRS 212
            +      S      +  F   + + + +       +  +   +         +   I++
Sbjct: 180 TFPTRKVLSKFCKNIRSAFDGSEEVLSTIPGFFRQESKKFPGQKMYSFAKHVGIGIGIKN 239

Query: 213 SRGQVIAFGGRT--LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS 270
           ++GQV+    R       +      S    +         +    +             +
Sbjct: 240 AKGQVVGIQIRHDAKGDKDVRYVWFSSAFAMNDDK-----YDSGTSSGSPVDVVYPEVIT 294

Query: 271 SSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR--IVLCFDGDDPGL 328
           +  +++ EG      L ++     +S  G       +  L ++     +   ++GD    
Sbjct: 295 NRTVLITEGRFKAQHLAKSTGSITISVQGVTSWRGIVSELDEIPNSLAVKKRYNGDYNVH 354

Query: 329 RAAY-KAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
                   D+     +                 ++   + +   + +    L       K
Sbjct: 355 CLCIAFDADMNYKWQVAEQLKKMADQLEAHGYFTYYLNWNEKDGKGVDDIILAGKQATIK 414

Query: 388 RETENRSFNTPDERAELEIHLKNC--INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
           R  +     + ++  E  +  +    +  + +  ++ Y+   +R +          E SG
Sbjct: 415 RYDKELWDKSYEKMCESILKNEPYTKMADVPEHVVKKYFEIYVRSK---TLPLEKGELSG 471

Query: 446 YGRYWKKNARHR 457
             +    + + R
Sbjct: 472 VHQRGINSKKTR 483


>gi|256818700|ref|YP_003135767.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8802]
 gi|256592440|gb|ACV03310.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8802]
          Length = 1172

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 92/478 (19%), Positives = 149/478 (31%), Gaps = 63/478 (13%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKG 60
            YP  F  D                  R      +       PF + K+  SF      G
Sbjct: 23  RYPHQFFDD------------------RSGKLRGRP------PFRESKSGTSFTVFPDNG 58

Query: 61  FYYCFSCHVKGDHLSFL--SAL------LGCSFIESVQRLAAIAGVPLPVV--DPKIEKK 110
           FY        G    +L    +       G  F+E+V+ L  IA +  P     P+  +K
Sbjct: 59  FY-DAGDGFSGSAADYLHSMNIGRWERAKGRDFVEAVRELCTIASIEFPEQELTPEQIEK 117

Query: 111 EKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD-ERGIDSHAIEMFKLGYAPDSRYSL 169
                    +I  A  F    L          YL+ ERG+    I+  +LGY  + R  +
Sbjct: 118 AAHWERRRGIIGSAIAFCEQVLWTDIGLEARRYLNEERGLSDQDIKTLQLGYFANYREVV 177

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
           +  L+Q+GFS+E+I  AGL            ++   + +P    +G+ +   GR   K  
Sbjct: 178 K-ILKQRGFSQEEIKAAGLAS---------PKWNGYITYPWHDDQGRPLTIYGRYHQKHP 227

Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289
                 +         ++                  V  N     I VEG  D   L   
Sbjct: 228 PEGLPKTLALPGGSTKRSPLYLDK------------VLANHHREAIFVEGVNDAAVLQTR 275

Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
           G   V+S +  + +  Q+ +L +     +    GD  G        +L    L   +   
Sbjct: 276 GETRVLSGVAASFSNEQIEILKRRGITKIY-HLGDPDGGGVGGTNSNLQRLTLAGISVFV 334

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
              L  G DPD F+  YG  AF +LI  S        K+       ++     ++     
Sbjct: 335 PPQLPDGLDPDEFVIKYGLEAFHQLISNSEHGFRWKAKQIIATHGTDSDAAIKKVLEEAI 394

Query: 410 NCINHIK---DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
                I    +  L+ +Y   I+  +         E     +              S+
Sbjct: 395 AWSRLIPKEQESDLKAFYWVEIQQAIGSTDTSQFVEQLQTIKTQASPVEGIPNWKASE 452


>gi|301063317|ref|ZP_07203862.1| putative DNA primase [delta proteobacterium NaphS2]
 gi|300442614|gb|EFK06834.1| putative DNA primase [delta proteobacterium NaphS2]
          Length = 933

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 152/438 (34%), Gaps = 41/438 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    DF K +   I I + I        +   +   D    CPF       F    SKG
Sbjct: 1   MQTNEDF-KAVKYRIDIVSEIRSRTGQPTKSIGSDCIDLK-ECPFCKGHD-CFRITPSKG 57

Query: 61  FYYCFSC---HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQ 114
            YYC  C      GD  +F++ L  CS +E+++ LAA  G  +        K + ++K +
Sbjct: 58  VYYCHECPGGGKGGDIFNFVANLDNCSRLEALEDLAASCGYEMAPATKGTNKEDPRQKER 117

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L  +     +++H ++   ++  L Y   +R      ++ F++GY   S   L EHL 
Sbjct: 118 ETLQDVRNATAEYYHKNMFKDQNA-LRYQTQDRKHSHDVLKAFQVGY---SDGRLHEHLA 173

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
             GF +E  +++GL    +     Y   +   I+P R   GQ+  F  +        +  
Sbjct: 174 GHGFPQELRLKSGLTNIHEGRERDYFT-KGLYIYPHRGRSGQIEHFTQKDPRGKMKYQLP 232

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N  +        + YN                   S+  +ILVEG  D+L++   G    
Sbjct: 233 NDFKDP----ECHFYNMP--------------ALKSNGPLILVEGENDLLTVVDRGEFQN 274

Query: 295 VSSLGTALTEYQLRLL--WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           V +    L++ QL  L  W     + +C D D  G               +P        
Sbjct: 275 VIAGIGRLSKTQLDYLAKWAPGKTLFVCSDNDKGGENYREDVRKAFQALCMPPRLAKISN 334

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
                 P + ++          I + L       +   +    +  ++       + +  
Sbjct: 335 E-----PVTTLKFMRFDPEHNDIDDYLRSRKDAKRALIK--CLDQAEQILMPLKSVMHAY 387

Query: 413 NHIKDQKLRYYYSQAIRD 430
             + D + R      I +
Sbjct: 388 RTLCDDQERKRNGDEIGE 405


>gi|218203882|ref|YP_002364737.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8801]
 gi|218169669|gb|ACK68405.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8801]
          Length = 1172

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 86/436 (19%), Positives = 143/436 (32%), Gaps = 39/436 (8%)

Query: 44  PFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHLSFL--SAL------LGCSFIESVQRLAA 94
           PF + K   SF      GF+        G    +L    +       G  F+E+V+ L  
Sbjct: 41  PFRESKNGTSFTVFPDNGFF-DAGDGFSGSAADYLHSMKIGRWERAKGRDFVEAVRELCQ 99

Query: 95  IAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD-ERGIDS 151
           +A +P P     P+  +K         +I  A  F    L          YL+ ERG+  
Sbjct: 100 LARIPFPEQELSPEQIEKAAHWERRRGIIGSAIAFCEQVLWTDIGLEARRYLNEERGLSD 159

Query: 152 HAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIR 211
             I+  +LGY  + R  ++  L+Q+GFS+E+I  AGL            ++   + +P  
Sbjct: 160 QDIKTLQLGYFANYREVVK-ILKQRGFSQEEIKAAGLAS---------PKWNGYITYPWH 209

Query: 212 SSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271
             +G+ +   GR   K        +         ++                  V  N  
Sbjct: 210 DDQGRPLTIYGRYHQKHPPEGLPKTLALPGGSTKRSPLYLDK------------VLANHH 257

Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAA 331
              I VEG  D   L   G   V+S +  + +  Q+ +L +     +    GD  G    
Sbjct: 258 REAIFVEGVNDAAVLQTRGETRVLSGVAASFSNEQIEILKRRGITKIY-HLGDPDGGGVG 316

Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391
               +L    L   +      L  G DPD F+  YG  AF +LI  S        K+   
Sbjct: 317 GTNSNLQRLTLAGISVFVPPQLPDGLDPDEFVIKYGLEAFHQLISNSEHGFRWKAKQIIA 376

Query: 392 NRSFNTPDERAELEIHLKNCINHIK---DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
               ++     ++          I    +  L+ +Y   I+  +         E     +
Sbjct: 377 THGTDSDAAIKKVLEEAIAWSRLIPKEQESDLKAFYWVEIQQAIGSTDTSQFVEQLQTIK 436

Query: 449 YWKKNARHRDQKGPSQ 464
                         S+
Sbjct: 437 TQASLVEGIPNWKASE 452


>gi|124010376|ref|ZP_01695022.1| CHC2 zinc finger domain protein [Microscilla marina ATCC 23134]
 gi|123983543|gb|EAY24008.1| CHC2 zinc finger domain protein [Microscilla marina ATCC 23134]
          Length = 876

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 70/378 (18%), Positives = 126/378 (33%), Gaps = 68/378 (17%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I+ +  ++ I+ ++  Y        N +      CCPFH++  PS          +CFS
Sbjct: 2   TIQQIKQNLSITTVLAHY-GLSVNGNNRM------CCPFHNDTKPSMEVFPKSDTVFCFS 54

Query: 67  --CHVKG---DHLSFLSALLGCSFIESVQR----LAAIAGVPLPVVDPKIEKKEKIQTDL 117
             C V G   D + F+      S  E++ +    L A  GV  P       +    +   
Sbjct: 55  SNCEVHGKPIDVIDFVMHQEKLSKHEAILKCKSLLGATGGVGAPSPSLVQAQPAISEKVR 114

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           ++ +  A   F  +   ++  + +                     P              
Sbjct: 115 VKTMTAAFAHFQKAFAQSKAAQAYMQSRGLEGIQEVGFHDGKLSKP-------------- 160

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
                     L    D    S    R  +IFP++++ G +++F GR++S     ++  S 
Sbjct: 161 ----------LRAGLDTLGISSAWGRGCIIFPLKNAEGDIVSFYGRSISNEGDQRHFYS- 209

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL-CQAGVQNVVS 296
                 + + LY  +                 S+ +++L E  +D  S         V++
Sbjct: 210 -----TQRQGLYPGYP-------------DAQSTKYLVLTESVIDAASFPVDDDATAVLA 251

Query: 297 SLGTALTEYQLRLL---WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-----NRV 348
             GT       + L         I L FDGDD G +A     D +    + G       +
Sbjct: 252 LYGTNGLTPAHKQLVVQMPHLEEIYLFFDGDDAGRKALKTRADELWKVWLHGASATTQTI 311

Query: 349 NFVLLSRGEDPDSFIRCY 366
           + V    GED +S +  Y
Sbjct: 312 SSVPTPEGEDVNSLLVAY 329


>gi|218507669|ref|ZP_03505547.1| DNA primase [Rhizobium etli Brasil 5]
          Length = 132

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 57/125 (45%), Positives = 84/125 (67%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           +  V   +   + + +RL   GFG L+K LD+QVR+A LW+AT EA + D R+GY+QALA
Sbjct: 2   AAAVAGPHLTRDYLTERLEFEGFGSLIKSLDQQVRNARLWTATEEAAMEDAREGYRQALA 61

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
            +KR + L RQK E+E++IA  T  G+ E    LI    EVH++  ++E+QEA+I+GFG 
Sbjct: 62  FHKRAKALRRQKMELEREIALATEAGDGEAIVQLIRAQQEVHLEGVRLENQEAIIDGFGV 121

Query: 644 MSGRL 648
           +SGR+
Sbjct: 122 LSGRV 126


>gi|325103632|ref|YP_004273286.1| hypothetical protein Pedsa_0892 [Pedobacter saltans DSM 12145]
 gi|324972480|gb|ADY51464.1| hypothetical protein Pedsa_0892 [Pedobacter saltans DSM 12145]
          Length = 324

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 12/166 (7%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +     I  ++   +    +         +  CPFH EK+ S      KG + CF C   
Sbjct: 9   IKEKADILQVVKSLIPLTAKG--------YGKCPFHTEKSGSLKVESKKGIFKCFGCGAS 60

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
           GD + F+      ++ E+   +A    +       K    E  +   + L  +  + F  
Sbjct: 61  GDVIDFVMKYKSITYKEAFTWIADFYRIGDFKDQAKDFVPEPAKELPVSL--IPKNIFIR 118

Query: 131 SLKNARDKRLHYYLDERGIDSH--AIEMFKLGYAPDSRYSLREHLR 174
           S+++      + +L+                  +     +     +
Sbjct: 119 SIRHYFHNNFYEWLNRHFAPESCFHAANQYFIGSSKHWNNATVFWQ 164


>gi|124010517|ref|ZP_01695149.1| CHC2 zinc finger domain protein [Microscilla marina ATCC 23134]
 gi|123982319|gb|EAY23874.1| CHC2 zinc finger domain protein [Microscilla marina ATCC 23134]
          Length = 819

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 124/376 (32%), Gaps = 66/376 (17%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I D+  ++ I+ ++  Y        N +      CCPFHD+K PS          +CFS
Sbjct: 2   TISDIKQNLSITTVLAHY-GLSVNGNNRM------CCPFHDDKKPSMEVFPKSDTVFCFS 54

Query: 67  --CHVKG---DHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIR 119
             C V G   D + F+      S  E++ +  ++ G    +        +    +   I+
Sbjct: 55  SNCEVHGKPIDVIDFVMHQEKLSKHEAILKCKSLLGATGGVGASAVAQAQPVVSEKSRIK 114

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            +      F  S   ++  + +                     P                
Sbjct: 115 TMTAVFAHFQKSFAQSKAAQAYMQNRGLERIQEVGFHDGTLSKP---------------- 158

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
                   L    +    +    R  +IFP+++++G++++F GR++S     ++  S + 
Sbjct: 159 --------LRAGLEALGITSAWGRGCVIFPLKNAQGEIVSFYGRSISNNGDQRHFYSKDR 210

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV-SSL 298
                       + A   L            + +++L E  +D  S         V +  
Sbjct: 211 K---------GLYPAYPDL----------QGTKYLVLTESVIDAASFPVDDAATAVLALY 251

Query: 299 GTALTEYQLRLL---WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-----NRVNF 350
           GT       + L         I L FDGDD G +A     D +    + G       ++ 
Sbjct: 252 GTNGLTPAHKQLVVQMPHLEEIYLFFDGDDAGRKALKSRADELWKVWMHGSSATTQTISS 311

Query: 351 VLLSRGEDPDSFIRCY 366
           V    GED +S +  Y
Sbjct: 312 VPTPEGEDVNSLLVAY 327


>gi|269928748|ref|YP_003321069.1| zinc finger CHC2-family protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269788105|gb|ACZ40247.1| zinc finger CHC2-family protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 214

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCND-SKG 60
           + R+ I+ +    PI  +IG  V             Y   CPFHD K+  S        G
Sbjct: 79  FERETIERIKTAWPIEAVIGLDVPLRPVGRG-----YRGKCPFHDGKSDNSLSVKPGVDG 133

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQT 115
            +YCF C   GD L+++ A   C F E+++RLA +AG+P+P    P+   K  ++ 
Sbjct: 134 AFYCFGCRFGGDVLAWIMAFHRCEFSEALRRLAHMAGLPIPMRRRPQPPSKGPVRE 189


>gi|224010754|ref|XP_002294334.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969829|gb|EED88168.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 80

 Score =  111 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 2  NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            P + I  +   I + ++I  Y +     T        ACCPFHD+  PS   +D++G 
Sbjct: 1  RIPTEQINQIKSTISLVDVIETY-NL-PSFTRTNSHIAKACCPFHDDNNPSMSIDDNRGL 58

Query: 62 YYCFSCHVKGDHLSFLSALLGC 83
          Y CF+C   GD  +F+      
Sbjct: 59 YKCFACGAGGDVFNFIREYDAL 80


>gi|257457792|ref|ZP_05622953.1| DNA primase [Treponema vincentii ATCC 35580]
 gi|257444842|gb|EEV19924.1| DNA primase [Treponema vincentii ATCC 35580]
          Length = 330

 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 135/357 (37%), Gaps = 31/357 (8%)

Query: 281 MDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340
           MDV++  QAG+ N V+ LGTALTE Q+RL+   +  I+L FD D  G +A YKAI L   
Sbjct: 1   MDVIAFHQAGITNAVAPLGTALTEEQVRLIQSFADTIILSFDSDFAGQQATYKAIKLCRA 60

Query: 341 HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE 400
                 +V  +++  G+DP   +   G  +  +L+  ++   D L +         +P+ 
Sbjct: 61  GH---LQVRVLMIKEGKDPAEILVRKGAESLTELVKHAILDSDYLIQIAVGRFDVVSPEG 117

Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
           +A+    L   I  ++    +          L    +   T++  Y +  ++    R  +
Sbjct: 118 KAQAAAFLFPYIEVLESDIQKESTIHKFSADLGISSKALFTDYIQYDQRQERVPPTRKSE 177

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                         K +      E  ++L    +P + ++   EL    +++   + L+ 
Sbjct: 178 TQ------------KRTALKMTAELRIVLAAAANPYLFKKMRAELTSDDFEDPAAKDLFI 225

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            L   +                   +  LL     +     + SA  +    +       
Sbjct: 226 VLEECYRADANT-------------YDSLLAHCPSETLKNAVSSAIIKGEFAENPDKLVH 272

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---LISILHEVHIQIHQIESQ 634
               Y +   L RQKE I +++  V   G+ ++      L+S    +   + +++  
Sbjct: 273 DGIYYIKQNALQRQKELIIRKLQAVRESGDIDEIRHTNDLLSEKLHIDRMLAELKET 329


>gi|283851755|ref|ZP_06369033.1| zinc finger CHC2-family protein [Desulfovibrio sp. FW1012B]
 gi|283572875|gb|EFC20857.1| zinc finger CHC2-family protein [Desulfovibrio sp. FW1012B]
          Length = 345

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 127/375 (33%), Gaps = 49/375 (13%)

Query: 8   IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
           I D+   IPI  +  +  +     K N   G        HD KTPS      K  ++CF 
Sbjct: 5   INDIKS-IPIKEVALKLGIKVKGNKANCFGG--------HDNKTPSLSFTPGKNLWHCFG 55

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-----IEKKEKIQTDLIRLI 121
           C + G+++  +   L C+F +S+Q  A   G+ +             +K  ++  + +  
Sbjct: 56  CGLGGNNIDLVEKSLRCTFKQSLQWFATNFGINIFNFRKTHDKLYNRQKVAVRQGIKKAT 115

Query: 122 EVATDFFHHSL--------KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
               D +   L        K         YL ERG+    I  FKL           E +
Sbjct: 116 AEV-DTYKADLELYEWIIKKLELSPEGENYLRERGLKEETISYFKLCDIVSPNKLFMEAV 174

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
           +  G     + +AGL     N   S+  + + +I P   S G V     R L +G     
Sbjct: 175 KAWGLER--LHKAGLTRINRNKTHSFIWWGHNIIIP-FMSNGHVTYIQARRLEQGGPKYI 231

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
                  + +  K ++N                     S + + EG  D +   Q  + N
Sbjct: 232 N------ISNIQKPMFNLDILRK-----------LKPGSRVYICEGVFDCIVGWQFKL-N 273

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            V  LG    + +   L+     IV+  D D+ G       + +          +  V L
Sbjct: 274 TVGILGVGSFKDEWVDLFANF-NIVIIPDADEAGEAF---GLKVQKVFAKMAKVIQIVKL 329

Query: 354 SRGEDPDSFIRCYGK 368
             G D + F+    +
Sbjct: 330 PNGSDLNDFLTEKHR 344


>gi|23006857|ref|ZP_00048985.1| hypothetical protein Magn03002268 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 249

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 89/237 (37%), Gaps = 20/237 (8%)

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS-- 463
             L+  +  I+D+ +R +Y   I +RL+ L        +       +      ++     
Sbjct: 5   RTLREAVAGIRDETVRRFYRDDIEERLRGLSGGRPERATARSTAPAQRGAPFARRPRPGD 64

Query: 464 -----------QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
                        L++++        + + REA ++++L+ HP +L  + + LA +   N
Sbjct: 65  PPPSPRITTGFSPLLKAAAPVPVRGGRAAKREAMIVMSLLAHPELLGIEEEALAALELVN 124

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            +   L + L     E     PE +  RL   G  E   +L   V     W     A+  
Sbjct: 125 PDASALRTLLLDRAAEAGTPEPELLESRLRRAGLEEAHGRLAALVNPGDRWMLDPNADPQ 184

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +     QA+ L+++   L  +  + E+ +A+       + +    + L +V  Q+ 
Sbjct: 185 RLEHTLHQAVILHRQSGALHSELHQAERALAE-------DGSEANFAWLCDVQQQLA 234


>gi|169834708|ref|YP_001693278.1| DNA primase [Clostridium botulinum B1 str. Okra]
 gi|169834993|ref|YP_001715818.1| DNA primase [Clostridium botulinum A3 str. Loch Maree]
 gi|169123256|gb|ACA47091.1| DNA primase [Clostridium botulinum B1 str. Okra]
 gi|169409100|gb|ACA57510.1| DNA primase [Clostridium botulinum A3 str. Loch Maree]
          Length = 474

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/472 (13%), Positives = 134/472 (28%), Gaps = 63/472 (13%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE-KTPSFHCNDSKGFYY 63
            + I+ +   I +  +IG  +   R+        Y   CPFH++ K  SF    SKG + 
Sbjct: 8   EELIEKIKS-ISLEIIIGTRIQLIRKG-----MYYMGICPFHNDHKIGSFIVTPSKGIWK 61

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEK-------IQ 114
           CF+C+V GD + F+S     +++E+   +     +   +       ++K K        +
Sbjct: 62  CFTCNVGGDAIQFISLHDKVNYVEAAFNIGLEFNLISSVEYEQYFSKRKYKAKEIKNIQK 121

Query: 115 TDLIRLIEVAT------------DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162
             +++     +            + F           +H     +         +     
Sbjct: 122 KYMVKTNNEKSIKANSYTLNKVYEIFTSCCDIYSAHYIHLLTKRQIAPQRINRDYFTFPT 181

Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222
                   + L + G++E+ +                      +   IR+++G+++    
Sbjct: 182 RKIWNQFVDKLNKCGYNEKILKNIPGFYFDIKRNQYTFAQYKGIGIKIRNTKGEIVGIQI 241

Query: 223 R---TLSKGESVKYLNSPETILFHKGKNLYNF-FGALNYLQKSIRKDVRRNSSSFIILVE 278
           R     +K +      S       + K+ Y    GA + +   +    +  ++  + + E
Sbjct: 242 RKDKKRNKQDQRYIWFSSSFANLEENKDKYKLGTGAGSPI--DVVYPSQITNNPTLAITE 299

Query: 279 GYMDVLSLCQAGVQNVVSSLGTALTEY------------------------QLRLLWKLS 314
           G      L + GV  +     T   +                         Q + +    
Sbjct: 300 GRFKAEKLAERGVIAISVQGVTTWRKIIEVIGEIKRLQQYKEAINKFHLYCQYKGIKNKK 359

Query: 315 PRIVLCFDGDDPGLRAAYKAID-----LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
             I +CFD D  G    Y         +                  G+  D  I      
Sbjct: 360 IPIYICFDADMIGNFQVYTQGKKMSDAIEKRFHEYKIIYLQWNEKYGKGIDDLIINNQTN 419

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
              +   E+L  +                         +K     I  Q  R
Sbjct: 420 KARRFKKETLDYIYGSLILNILKEYHEYEGPNKIPNELIKKEFYTIISQNER 471


>gi|58697685|ref|ZP_00372848.1| DNA primase [Wolbachia endosymbiont of Drosophila simulans]
 gi|58535810|gb|EAL59634.1| DNA primase [Wolbachia endosymbiont of Drosophila simulans]
          Length = 245

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 111/252 (44%), Gaps = 17/252 (6%)

Query: 225 LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284
           LS  +  KYLNSPE+ LF K +NLY    AL+ ++K             I++VEGYMD +
Sbjct: 2   LSSEQQPKYLNSPESQLFKKRENLYGLNFALSEIRKK----------QHILVVEGYMDTI 51

Query: 285 SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344
           +L QAG+ N V+ LGTA++  Q++ LW+ +  I +C DGD  G  AA +  +L L  L P
Sbjct: 52  ALHQAGISNAVAPLGTAISAEQIKNLWRFAKEISICMDGDSAGRHAATRVAELALPILEP 111

Query: 345 GNRVNFVLLSRGEDPDSFIR--CYGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNT 397
           G  + FV L   +DP        Y K      +  S  L              +N     
Sbjct: 112 GYTLKFVTLPSNKDPYDICNELEYKKEDVLTALDHSTKLHSEYLWHHIIDSNLQNYEKLA 171

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
           P++ + LE      +N I +  +R YY     ++  +L   +  +         K     
Sbjct: 172 PEKYSILEHKFMEYVNTISNSSIRRYYRDYFYNKASELRSSFKKQIFNSKTRATKGEYLH 231

Query: 458 DQKGPSQRLMQS 469
           ++        Q+
Sbjct: 232 NKSPELIEAEQN 243


>gi|119357507|ref|YP_912151.1| zinc finger, CHC2-family protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119354856|gb|ABL65727.1| zinc finger, CHC2-family protein [Chlorobium phaeobacteroides DSM
           266]
          Length = 350

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/369 (15%), Positives = 112/369 (30%), Gaps = 39/369 (10%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           +  +  +   IPI  +  + +  + R T A+   +      HD+ +PS   + +   + C
Sbjct: 4   KSDLSPIKQ-IPIIEV-AKRLGIEVRGTKAM--CFMG----HDKASPSLSFSINYNTWRC 55

Query: 65  FS-CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIRL 120
           F  C   GD ++ +    G  F  +++  +      +        K+    K    ++  
Sbjct: 56  FGACGKHGDAINLVMEKEGLDFNAALEWFSNNFNADVKRQFSGQRKRTCSIKQNNAMVAP 115

Query: 121 IEVATDFFHHS-----LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           ++  ++FF  S       N      +             ++    +      S     R 
Sbjct: 116 VQKQSEFFSDSELYTWFVNKCAFVSNPVGVNYLESHGISDVAASRFNLRQMSSPARAFRM 175

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRG-QVIAFGGRTLSKGESVKYL 234
                 +       I                          ++     R   K    K+L
Sbjct: 176 LLQQWGEDRVFRSGIAWGRDGKPISLIWGSYALLFPFYDEVKITYIQARMFEKEPKAKFL 235

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N          K L+N                   +   + L EG  DV+SL   G+  +
Sbjct: 236 NLRG-----ITKPLFNADRLK-----------SLPAGQTVHLCEGVPDVVSLESKGLIAL 279

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
                T+     +    K   ++V+  DGD+ G + A    D+    +  G  V  + L 
Sbjct: 280 GVLGATSFRTEWVDRFLKF--KVVVLGDGDEGGAKFAK---DISKYFIDRGKPVQCMTLP 334

Query: 355 RGEDPDSFI 363
           +G+D    +
Sbjct: 335 KGKDVSDVL 343


>gi|229587390|ref|YP_002860428.1| DNA primase [Clostridium botulinum Ba4 str. 657]
 gi|229260225|gb|ACQ51262.1| DNA primase [Clostridium botulinum Ba4 str. 657]
          Length = 474

 Score =  108 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 61/473 (12%), Positives = 136/473 (28%), Gaps = 65/473 (13%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE-KTPSFHCNDSKGFYY 63
            + I+ +   I +  +IG  +   R+        Y   CPFH++ K  SF    SKG + 
Sbjct: 8   EELIEKIKS-ISLEIIIGTRIQLIRKG-----MHYMGICPFHNDHKIGSFIVTPSKGIWK 61

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEK-------IQ 114
           CF+C V GD + F++     +++E+   +     +   +       ++K K        +
Sbjct: 62  CFTCTVGGDAIQFIALYDKVNYVEAAFNIGLEFNLISSVEYEQYFSKRKYKAKEIKNMQK 121

Query: 115 TDLIRLIEVAT------------DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162
             +++     +            + F           +H     +         +     
Sbjct: 122 KYMVKTNNEKSIKANSYTLNKVYEIFTSCCDIYSAHYIHLLTKRQIAPHRINRDYFTFPT 181

Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222
                   + L + G++E+ +                      +   IR+++G+++    
Sbjct: 182 RKIWNQFVDKLNKCGYNEKILESIPGFYFDIKRNQYTFAQYKGIGIKIRNTKGEIVGIQI 241

Query: 223 R----TLSKGESVKYLNSPETIL-FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILV 277
           R       + +   + +S    L  ++ K  +   GA + +   +    +  ++  + + 
Sbjct: 242 RKDKKRNKQDQRYIWFSSSFANLEENEDKYKFGT-GAGSPI--DVVYPSQIINNPTLSIT 298

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEY------------------------QLRLLWKL 313
           EG      L + GV  +     T   +                         Q + +   
Sbjct: 299 EGRFKAEKLAERGVIAISVQGVTTWRKIIEVIEEIKRLQQYKEAINKFHLYCQYKGIKNK 358

Query: 314 SPRIVLCFDGDDPGLRAAYKAID-----LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
              I +CFD D  G    Y         +                  G+  D  I     
Sbjct: 359 KIPIYICFDADMIGNLQVYTQGKKMSNAIEKKFPEYKIIYLQWNEKYGKGIDDLIINNQT 418

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
               +   E+L  +                         +K     I ++  +
Sbjct: 419 DKARRFKKETLDYIYESLISNILKEYHEYEGPNKIPNELIKKEFYTIINKNEK 471


>gi|269838258|ref|YP_003320486.1| zinc finger CHC2-family protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269787521|gb|ACZ39664.1| zinc finger CHC2-family protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 198

 Score =  108 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 14/105 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPS-----FHCND 57
           + R  I+ +   +PI  +IG  V+   R            CPFH   +PS          
Sbjct: 83  FARSEIERIRTALPIEAVIGLDVELKPRGK-----SLRGRCPFH---SPSKSGMSLAVRP 134

Query: 58  SK-GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
              G +YCF C V GD L+++ A   C F E+++RLA +AG P+P
Sbjct: 135 GHDGKWYCFGCGVGGDVLTWIMAFNHCEFTEALRRLAVMAGEPIP 179


>gi|124010293|ref|ZP_01694945.1| DNA primase, putative [Microscilla marina ATCC 23134]
 gi|123983627|gb|EAY24072.1| DNA primase, putative [Microscilla marina ATCC 23134]
          Length = 319

 Score =  108 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 114/350 (32%), Gaps = 61/350 (17%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I D+  ++ I+ ++  Y        N +      CCPFHD+K PS          +CFS
Sbjct: 2   TISDIKQNLSITTVLAHY-GLSVNGNNRM------CCPFHDDKKPSMEVFPKSDTVFCFS 54

Query: 67  --CHVKG---DHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIR 119
             C V G   D + F+      S  E++ +  ++ G    +        +    +   I+
Sbjct: 55  SNCEVHGKPIDVIDFVMHQEKLSKHEAILKCKSLLGATGGVGASAVAQAQPVVSEKSRIK 114

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            +      F  S   ++  + +                     P                
Sbjct: 115 TMTAVFAHFQKSFAQSKAAQAYMQNRGLERIQEVGFHDGTLSKP---------------- 158

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
                   L    +    +    R  +IFP+++++G++++F GR++S     ++  S + 
Sbjct: 159 --------LRAGLEALGITSAWGRGCVIFPLKNAQGEIVSFYGRSISNNGDQRHFYSKDR 210

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV-SSL 298
                       + A   L            + +++L E  +D  S         V +  
Sbjct: 211 K---------GLYPAYPDL----------QGTKYLVLTESVIDAASFPVDDAATAVLALY 251

Query: 299 GTALTEYQLRLL---WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           GT       + L         I L FDGDD G +A     D +    + G
Sbjct: 252 GTNGLTPAHKQLVVQMPHLEEIYLFFDGDDAGRKALKSRADELWKVWMHG 301


>gi|330827380|ref|YP_004390618.1| DNA primase catalytic core domain-containing protein
           [Alicycliphilus denitrificans K601]
 gi|329312688|gb|AEB87102.1| DNA primase catalytic core domain protein [Alicycliphilus
           denitrificans K601]
          Length = 328

 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 155/314 (49%), Gaps = 16/314 (5%)

Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           LI  +  A  F+   L+ +   R   YL  RG+       + LGYAP    +LRE     
Sbjct: 5   LIDHLTQAASFYRGQLRASH--RAVAYLKARGLRGDIAARYGLGYAPAGFQALREAF--P 60

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +++  + +AGL +  ++    YDRFR+R++FPI    G VI FGGR L      KYLNS
Sbjct: 61  NYNDRALEKAGL-VAVNDGGRRYDRFRDRIMFPILDDAGSVIGFGGRVLEGD-GPKYLNS 118

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           PET +F KG+ L+    A   +           ++    +VEGY+DV+SL Q GVQN V+
Sbjct: 119 PETEVFQKGRVLFGLTQAAEAIA----------ATGTAYVVEGYLDVVSLAQHGVQNAVA 168

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
           +LGTA T   +  L  L+ R++ CFDGDD G RAA +A+D+ L H+     V+F+ L R 
Sbjct: 169 TLGTATTGQHVERLLGLAKRVIFCFDGDDAGRRAAARALDVCLPHVTDAADVSFLFLPRD 228

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPDS++R  G  AF  L +E+  L         +       + RA L       +  I 
Sbjct: 229 HDPDSYVRAKGGDAFNDLALEASSLEGFFLASAMQGCQLEYAEGRARLVAMAAPRLQQIN 288

Query: 417 DQKLRYYYSQAIRD 430
              +      AI  
Sbjct: 289 APAMLCRILTAIAG 302


>gi|162606482|ref|XP_001713271.1| DNA primase [Guillardia theta]
 gi|12580737|emb|CAC27055.1| DNA primase [Guillardia theta]
          Length = 651

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 81/403 (20%), Positives = 149/403 (36%), Gaps = 59/403 (14%)

Query: 28  DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD------HLS------ 75
           +++  N     ++A CPFH EKTPSF  N +K  +YCF C + G+               
Sbjct: 67  EKKGEN-----FFAICPFHSEKTPSFCLNLNKNLFYCFGCGISGNYSKLVYLFKNKIDTH 121

Query: 76  -----FL--SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
                F   +     +F         I  + +                L   ++    F+
Sbjct: 122 ELNDFFYTNTKSDNSNF--------NINNIEMSEFQTLN---------LYFKLD---KFY 161

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
           H +LK  +   L+ + +   +    + +           + +E+       + K ++  +
Sbjct: 162 HKNLKETKFYMLYKFRNLSNLTMKILNLGYSNKKISQIINCQENHEYLRLLKTKTMKYVV 221

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
               +      D F  RL+ PIR+     + FG RT++  +  KYLNS E   F K K L
Sbjct: 222 FDKINKKVVIRDIFNERLVIPIRNIYCLTLGFGARTINSKKIPKYLNSKENKFFKKKKIL 281

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL- 307
           +              K      S   ++ EGY+D ++L Q G++  V+SLG +   +Q+ 
Sbjct: 282 F----------SEEIKSNISLKSKCCLICEGYLDSITLFQNGIRFSVASLGGSSNNFQIF 331

Query: 308 -RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG---EDPDSFI 363
              L       +L FD D+ G    ++ I   L        ++ + LS     +DPD ++
Sbjct: 332 KSFLISDYFHTMLFFDFDNAGKLFTFRLIKYFLKLGKNDYILSAISLSDLDYIKDPDEYL 391

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
             Y        ++ +   +       +   +F+      E+  
Sbjct: 392 TEYKSQKLVNCLLNNFIPIYYWIYLNSRYTTFSNNLIYNEILK 434


>gi|312885823|ref|ZP_07745455.1| zinc finger CHC2-family protein [Mucilaginibacter paludis DSM
          18603]
 gi|311301630|gb|EFQ78667.1| zinc finger CHC2-family protein [Mucilaginibacter paludis DSM
          18603]
          Length = 89

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 3  YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              F+ ++     I+ L  ++ +   +  +         CP H     +F  +  K  Y
Sbjct: 2  ISPAFVDNVTAKTDIAELAAEFTELIPKGNSLA-----GPCPLHGGTGATFTVSPDKQVY 56

Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAI 95
           CF     G+ +  +  +  CSF E+V  LA  
Sbjct: 57 KCFKGGSGGNAIKLVMNVQKCSFPEAVVFLAKR 89


>gi|283479889|emb|CAY75805.1| DNA primase [Erwinia pyrifoliae DSM 12163]
          Length = 877

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 73/340 (21%), Positives = 123/340 (36%), Gaps = 36/340 (10%)

Query: 53  FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKI 107
              + +K  Y+CF C   G  L +L      S  ++V+RL A  G     VPL       
Sbjct: 1   MVISPAKNLYHCFGCDAGGSVLDWLMHSEXLSLRKAVERLRAELGENPALVPLVAQPDXF 60

Query: 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167
              E  +  L   +E  T F+HH+L NA  + L Y    R      +  F+ G A     
Sbjct: 61  ADDEAGRQAL---LERVTAFYHHTLLNAP-EALAYLEKRRLNHPDLVAQFRPGXA---NR 113

Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
           +L   L  K   +   I + L   G    + ++ F   L+ P+    G +    GR + K
Sbjct: 114 TLAYRLPPKKLKDGAAIRSRLQALGIMRESGHEHFTGXLVVPVAXLHGXIREVYGRKIDK 173

Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
            +                 +LY     L      +  +     S  +IL E  +  +S  
Sbjct: 174 PQRGM------------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIXAMSFW 216

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
            AG +NV ++ G        R  +      ++++ FD D  G  AA   + L        
Sbjct: 217 VAGWRNVTAAYGVXGFTDDHRRAFAQHEIXQVLIAFDNDXAGNAAA---VRLAAELAAMQ 273

Query: 346 NRVNFVLLSRGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383
                ++  +G D + ++      +  F  L+  + P+ D
Sbjct: 274 IDAFRIVFPQGMDANGWLCRVAEPEREFGLLVESAQPMRD 313


>gi|294672894|ref|YP_003573510.1| DNA-binding protein [Prevotella ruminicola 23]
 gi|294472179|gb|ADE81568.1| putative DNA-binding protein [Prevotella ruminicola 23]
          Length = 341

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 1  MNYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          M Y    ++ +   +PI ++  +  +    +     +      C  H++K PS H N  K
Sbjct: 1  MKYNELDLQKIRE-MPIFDVCSKLGITLKGKGKITKRT----LCWHHNDKHPSMHINKDK 55

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
            Y CF C   GD +  +       F+E+   L     V
Sbjct: 56 NIYKCFVCGEGGDVIKLVQEYENLDFLEACDWLVKEFDV 94


>gi|33322563|gb|AAQ07012.1|AF496332_1 DNA primase [Lactobacillus delbrueckii subsp. lactis]
          Length = 261

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 79/251 (31%), Positives = 137/251 (54%), Gaps = 15/251 (5%)

Query: 115 TDLIRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
                + + A DF+   L      +R   Y  +RG++   ++ FK+GYAP     L  +L
Sbjct: 8   ESFDAMHKEAADFYQKVLMTTKIGERGLEYARKRGLNDDLLKHFKIGYAPGKSDLLLTYL 67

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVK 232
           R +G++++++ E+GL +   +    +DRFR+RL+FP+    G  +AF GR +S   E  K
Sbjct: 68  RGEGYTDDQLAESGLFVKSQDG-RLFDRFRDRLMFPMSDESGHPVAFSGRRISDDPEEPK 126

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           YLNSPET +F+K   L++F  A  + +K             ++L EG+MDV+S  +AGV+
Sbjct: 127 YLNSPETSIFNKSDLLFHFSEAKKHARK----------EGHLVLFEGHMDVISAYKAGVK 176

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
             ++S+GT+LT+ Q+ ++ +++ ++V+ +DGDD G  A  + + L             V 
Sbjct: 177 TGIASMGTSLTQQQVYMIRRITKQVVINYDGDDXGQHATERXVGLFKQAGNFDLGX--VX 234

Query: 353 LSRGEDPDSFI 363
           L    DPD ++
Sbjct: 235 LPDKLDPDEYV 245


>gi|327400620|ref|YP_004341459.1| DNA primase catalytic core domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327316128|gb|AEA46744.1| DNA primase catalytic core domain protein [Archaeoglobus veneficus
           SNP6]
          Length = 1117

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 68/406 (16%), Positives = 136/406 (33%), Gaps = 33/406 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPS-FHCNDSK 59
           M   +  ++++   + + +LI             + G+Y    P H   T +    N   
Sbjct: 1   MVDKKALLEEIRSKLRLEDLID------LTGFKLIGGEYRGPHPVHGSTTGTNLAVNLDN 54

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCS-----------FIESVQRLAAIAGVPLPV--VDPK 106
             +YCF C   GD L++L+   G             F E ++      G+       D +
Sbjct: 55  QVWYCFRCQSGGDALAWLAVQEGLIDCSEADDIAHVFPEVLRIACERLGIDFNTTPEDRR 114

Query: 107 IEKKEKIQTDLIRLI-EVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPD 164
             +K + +  L+  + + A  FF   L++  D +           +   +E F +GY P 
Sbjct: 115 AWRKLREEEQLLEAMFKEALAFFREQLEDCPDVKEWIREKYGLSWNDELLEKFGIGYCPP 174

Query: 165 SRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT 224
               L +HL  K      +    ++          D F  R++FP    RG+   F  R 
Sbjct: 175 DGDRLAKHLITKFGEVNALKTGLII---PTKDGYRDFFAGRVVFP-YFVRGKPAYFIARQ 230

Query: 225 LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284
                      + E     + K   N     + +++ I        +  +++ EG  D +
Sbjct: 231 TPWTPDG---PTKEAKYLKQLKKSDNHQYVSSLVEEPIYGIDSLRGAKEVVITEGIADAI 287

Query: 285 SLCQAGVQNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHL 342
           +    G    +S + T      +  L K      I +  D ++ G         L     
Sbjct: 288 TAIANGFP-AISPVTTRFKAEHVPDLQKYVRGRTIYIVNDNEESGAGLRGALAILRSIEG 346

Query: 343 IPGNRVNFVLLSRGE-DPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
                +        + D + + +      F +L+ +++P  + L +
Sbjct: 347 DARLVILPRPEGIEKIDVNDYFKALTAEEFRELLDKAVPKEEALLR 392


>gi|167957178|ref|ZP_02544252.1| DNA primase [candidate division TM7 single-cell isolate TM7c]
          Length = 350

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 153/396 (38%), Gaps = 47/396 (11%)

Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
             + KYLN+P+T+L+ K  +++    A   ++             + ++VEG +DV+S  
Sbjct: 1   PNAPKYLNTPQTLLYDKSWHVFGLAQAKESIR----------QHDYAVIVEGNIDVVSSH 50

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           QAG+  VV++ GTA+T + L+++ + S  I L FD D  GL A  +AI +       G  
Sbjct: 51  QAGINYVVATAGTAMTIHHLKIIGRFSKNIRLAFDSDKAGLAATERAISIAQ---EAGID 107

Query: 348 VNFVLLSRG-EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
           ++ + L    +DPD  I+      ++  I    P VD + ++  +N   +T   +     
Sbjct: 108 LSVISLPDYAKDPDELIQ-RDPKLWQGAIDAYEPAVDWILRQYYKNNDISTAAGKRAYTT 166

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
                I++++D   R +Y + + ++++   +    +                    + R 
Sbjct: 167 AGLAVIHNLQDPVERDHYLRKMAEKIETDIEVLRAKMKN-----------NSDTEIAHRK 215

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
           +     + K ++     E  LL   I +  +      E  +I +  +    L + L ++ 
Sbjct: 216 VVKVNPQNKSTQSEFELEDNLLALGITNKYVCDLILNEPIEI-FRGDNQYNLVNSLKNNL 274

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           ++ +                  LL + D +           EA+           L    
Sbjct: 275 LDLQNP----------PEYVKILLLRADARYAGWSDQDCRNEASR----------LIRRI 314

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
           +     ++KE +   +      G+  KT  L+  + 
Sbjct: 315 KDEYKKQKKELLTAALRDAEDVGDDAKTRELLKKIQ 350


>gi|225350721|ref|YP_002720706.1| DNA primase-like protein [Brachyspira hyodysenteriae WA1]
 gi|225216405|gb|ACN85138.1| DNA primase-like protein [Brachyspira hyodysenteriae WA1]
          Length = 403

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 153/436 (35%), Gaps = 43/436 (9%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           + I D+  +  I ++        R      + +  A CPFH++  PS   N    +Y+CF
Sbjct: 2   NKIDDIKRYYSIIDIA------KRLGFEIDRNN-KAICPFHNDTNPSLSFNIKDNYYHCF 54

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
           SC   GD++  +  +L CSF E++  +    G     ++    KKE              
Sbjct: 55  SCGASGDNIKLVQEVLHCSFNEAINFI---TGNNYQYINKSNIKKEITNDKFKIDYSNIY 111

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ--KGFSEEKI 183
             F   L N   +    YL++R I  + +   K+   P  +      +++  + ++E+ +
Sbjct: 112 KTFVDLLNN---EEAFQYLEKRCITKNQVIEHKIKNIPKDKKEQFLIIKKLLEVYNEKDL 168

Query: 184 IEAGLLIDGDNSATSY-DRFRNRLIFPIRSSRGQ-VIAFGGRTLSKGESVKYLNSPETIL 241
           I +G++         Y   +++RLI P  +  G+ + +  GRT+ +              
Sbjct: 169 INSGIISKSKEYNNLYLFHYKHRLIIPYFNIDGETINSIQGRTIDEDI------------ 216

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
             K K L+N          SI    +      II+ EG +D LSL + G   +  S  T 
Sbjct: 217 --KPKYLFN-----KNANDSIYNIDKIGDIKDIIICEGVIDCLSLERLGYNAIALSGATK 269

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           +   +   + +    I    D D  G +      +            NF      +D + 
Sbjct: 270 INILRDYPILEKY-NIYSFSDNDKAGKKLIKDIYNFNNYKGTF-LISNFSDDKEVKDINE 327

Query: 362 FIRCYGKTAF--EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +       F    +  + L L +                +  +     +  +  + + K
Sbjct: 328 LLIKSQVKKFNINNIEYKYLELKNDKICILDYYIFTKNELKYIKKSNDFERTLYLLTEDK 387

Query: 420 LR---YYYSQAIRDRL 432
            +     Y +   + +
Sbjct: 388 KKLTEEEYIKKYGELI 403


>gi|58699769|ref|ZP_00374410.1| DNA primase [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533714|gb|EAL58072.1| DNA primase [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 225

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 66/213 (30%), Positives = 99/213 (46%), Gaps = 17/213 (7%)

Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289
            V   NSPE+ LF K +NLY    AL+ ++K             I++VEGYMD ++L QA
Sbjct: 23  QVTITNSPESQLFKKRENLYGLNFALSEIRKK----------QHILVVEGYMDTIALHQA 72

Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
           G+ N V+ LGTA++  Q++ LW+ +  I +C DGD  G  AA +  +L L  L PG  + 
Sbjct: 73  GISNAVAPLGTAISAEQIKNLWRFAKEISICMDGDSAGRHAATRVAELALPILEPGYTLK 132

Query: 350 FVLLSRGEDPDSFIR--CYGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNTPDERA 402
           FV L   +DP        Y K      +  S  L              +N     P++ +
Sbjct: 133 FVTLPSNKDPYDICNELEYKKEDVLTALDHSTKLHSEYLWHHIIDSNLQNYEKLAPEKYS 192

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            LE      +N I +  +R YY     ++  +L
Sbjct: 193 ILEHKFMEYVNTISNSSIRRYYRDYFYNKASEL 225


>gi|168184390|ref|ZP_02619054.1| DNA primase [Clostridium botulinum Bf]
 gi|182672551|gb|EDT84512.1| DNA primase [Clostridium botulinum Bf]
          Length = 253

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 80/241 (33%), Gaps = 28/241 (11%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE-KTPSFHCNDSKGFYY 63
            + I+ +   I +  +IG  +   R+        Y   CPFH++ K  SF    SKG + 
Sbjct: 8   EELIEKIKS-ISLEIIIGTRIQLIRKG-----MHYMGICPFHNDHKIGSFIVTPSKGIWK 61

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEK-------IQ 114
           CF+C V GD + F++     +++E+   +     +   +       ++K K        +
Sbjct: 62  CFTCTVGGDAIQFIALYDKVNYVEAAFNIGLEFNLISSVEYEQYFSKRKYKAKEIKNMQK 121

Query: 115 TDLIRLIEVAT------------DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162
             +++     +            + F           +H     +         +     
Sbjct: 122 KYMVKTNNEKSIKANSYTLNKVYEIFTSCCDIYSAHYIHLLTKRQIAPHRINRDYFTFPT 181

Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222
                   + L + G++E+ +                      +   IR+++G+++    
Sbjct: 182 RKIWNQFVDKLNKCGYNEKILESIPGFYFDIKRNQYTFAQYKGIGIKIRNTKGEIVGIQI 241

Query: 223 R 223
           R
Sbjct: 242 R 242


>gi|158320328|ref|YP_001512835.1| zinc finger CHC2-family protein [Alkaliphilus oremlandii OhILAs]
 gi|158140527|gb|ABW18839.1| zinc finger CHC2-family protein [Alkaliphilus oremlandii OhILAs]
          Length = 891

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 80/502 (15%), Positives = 139/502 (27%), Gaps = 83/502 (16%)

Query: 29  RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88
           ++       +    CPFH++K PSF  N   G Y C +C  KG+ ++FLS     S  E+
Sbjct: 27  KKGK-ISGDNLVGLCPFHNDKKPSFGANLKTGVYNCLACGEKGNAITFLSKTQNISNKEA 85

Query: 89  VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148
            + L   AG+     D    K +                               Y     
Sbjct: 86  YKILLKEAGL---YEDKTNSKTQNS----------------------------TYSTNSI 114

Query: 149 IDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208
              ++              S +     K   E+   E  L +    S    +     +  
Sbjct: 115 NPINSTNPVDSTKLIKLTNSNKYTKPTKYTVEDYCKEKRLDVGFIRSLGIRNGRLG-ITI 173

Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRR 268
           P     G+VI+   R      +         +      NLY              K  + 
Sbjct: 174 PYMDEAGKVISNRQRYQKDHPTRFSWARGSKV------NLYGL-----------WKLNKV 216

Query: 269 NSSSFIILVEGYMDVLSLCQAGVQNVVS-SLGTALTEYQLRLLW------KLSPRIVLCF 321
              + +ILVEG  D  +L   G++  +            +             P I +  
Sbjct: 217 REVNRVILVEGESDCHTLWCHGIEEALGVPGAITFHLDWVDKFKFSSEEGSTFPHIYIHH 276

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG-EDPDSFIRCYG---KTAFEKLIVE 377
           +GD        K  + ++     G        S G +DP              ++ ++ E
Sbjct: 277 EGDAGADAFVDKICNALVKKDFKGRIYKISCSSLGAKDPSELHILDPDSFSEKWKVILNE 336

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELE--------IHLKNCINHIKDQKLRYYYSQAIR 429
           +  +    +  E +N   N P    + E        I + N    I     R      I 
Sbjct: 337 AEEIDIKSFSLEIDNLIPNAPVRLKQPEGFRVSENGIEMINYKTGIPQLICRTPIL--IS 394

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           +RL+ L          + R  K +     +    Q      L    ++            
Sbjct: 395 NRLKSLDSYDEKIEITFYRDKKWHRVTEQRSVIFQARTIIKLADVGVTVTSENA------ 448

Query: 490 TLINHPAILQEQYQELADIRYD 511
                   L +  ++L    +D
Sbjct: 449 ------KFLVKFLEKLEAENFD 464


>gi|71899658|ref|ZP_00681812.1| TOPRIM [Xylella fastidiosa Ann-1]
 gi|71730610|gb|EAO32687.1| TOPRIM [Xylella fastidiosa Ann-1]
          Length = 340

 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 73/366 (19%), Positives = 143/366 (39%), Gaps = 39/366 (10%)

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            + LY  +      Q   R          +I+VEGYMDV+SL Q G+   V++LGTA T 
Sbjct: 1   SRELYGLWQVRQAHQNIER----------LIVVEGYMDVISLFQFGITQAVATLGTATTV 50

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
               LL++ +P +  CFDGD+ G +A ++A++ +L  +  G +  F+ L  GEDPD+ +R
Sbjct: 51  EHAELLFRNTPDVYFCFDGDNAGRKAGWRALESILPRMKEGRQAFFLFLPDGEDPDTIVR 110

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AF + + +++PL    +   + + + +T D +A L    +  +  I +       
Sbjct: 111 KEGKNAFNERLKQAIPLSQFFFDALSSDIALHTLDGKARLAERARPLLMKIPEGAFNDLM 170

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            Q +                             +   P      +S    +L  +     
Sbjct: 171 RQRLAHLTGV-----------------------NIAHPGPAPAATSRPATRLPAQKRNLI 207

Query: 485 AALLLTLINHPAILQEQYQ--ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
              +  ++  P++         LA        +      L     ++       + +   
Sbjct: 208 HTTIAIILQQPSLAMTLNTPYPLAINDLKQPGIAL-LLELLDLIHQRPEITTGALLEHFT 266

Query: 543 ERGFGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           ER    LL+ L  Q        W+   +  +  +++   Q        + L++  ++I+K
Sbjct: 267 EREEYVLLQTLATQTMPGDTATWTQELQGAMTQMQKQLLQQRLNALHTKQLTQPLDDIDK 326

Query: 601 -QIAQV 605
            ++ ++
Sbjct: 327 YELREL 332


>gi|168236494|ref|ZP_02661552.1| DNA primase [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. SL480]
 gi|197290333|gb|EDY29689.1| DNA primase [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. SL480]
          Length = 132

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 15 IPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
            I  +I  +V  +R+  N     Y   CPFH EKTPSF  + S+  + C  C   GD  
Sbjct: 2  TDILEIIRPHVHLERQGKN-----YVGLCPFHQEKTPSFTVDPSEQTFCCLGCGAHGDAG 56

Query: 75 SF--LSALLG 82
           F  L  + G
Sbjct: 57 EFAKLMLMKG 66


>gi|256423768|ref|YP_003124421.1| zinc finger CHC2-family protein [Chitinophaga pinensis DSM 2588]
 gi|256038676|gb|ACU62220.1| zinc finger CHC2-family protein [Chitinophaga pinensis DSM 2588]
          Length = 899

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 125/386 (32%), Gaps = 52/386 (13%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS- 66
           I  +   + +S ++  Y      K   +       CPFHD+KTPS          YCFS 
Sbjct: 4   IAAIKQQLTLSQVLMHY-GLKPDKHLRLH------CPFHDDKTPSLQVYYKTQTCYCFSS 56

Query: 67  -CHVKG---DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
            C   G   D + F+    G S  E++ +   + G         +      ++    ++ 
Sbjct: 57  NCKTHGKSLDVIDFVMHKDGISKREAILKCKELIG----GSTSAVAAVPVSRSG---ILN 109

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDS-HAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
               +F +++ N++  + +       I            +    R               
Sbjct: 110 YMFTYFKNAIHNSKPAQAYLQSRGLDITRLEVGYNTAQFHHGARRDEALI----SACVSV 165

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241
            ++ A      + +       +  + F +R S G++     R+       ++    +   
Sbjct: 166 GLLSAWGSNTREGTQAYKPFGKYCIAFALRDSGGEISGMYFRSTVNDSDQRHYYLKD--- 222

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG-----VQNVVS 296
                            +K +     +++ + +IL E  +D  +L Q          +  
Sbjct: 223 -----------------RKGLYPGYPKSAITRLILTESVIDAATLLQHHEIGKGYGILAC 265

Query: 297 SLGTALTEYQLRLL--WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
                LT      +        I+  FDGD+ G R A +     L   +P  +++ ++L 
Sbjct: 266 YGTNGLTSEHEAAIVGLGQLQEIIFAFDGDEAG-RKAVEKYSSSLKERLPYVQLSSIVLP 324

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLP 380
            GED +S    +    F +L+     
Sbjct: 325 DGEDINSMGVSHTAEVFTELLQSRTS 350


>gi|218442614|ref|YP_002380934.1| P4 family phage/plasmid primase [Cyanothece sp. PCC 7424]
 gi|218174972|gb|ACK73704.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7424]
          Length = 1145

 Score =  101 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 86/564 (15%), Positives = 162/564 (28%), Gaps = 60/564 (10%)

Query: 32  TNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHLSFL--SAL------LG 82
            +   G      PF + K+  SF      GF+        G    ++    +        
Sbjct: 44  KSDATGKLRGIPPFRESKSGTSFTVFPDGGFF-DAGDGFAGSPADYIHSMRVGRWERARK 102

Query: 83  CSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRLIEVATDFFHHSLKNARDKRL 140
             F+ +V+ L  +  +P P  DP   + EK   +     ++          L +   +  
Sbjct: 103 ADFVAAVRELCELGSIPFPERDPSPSEIEKAVKEETRRAILRETIKICSDLLWSEFGREA 162

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
             YL      +              R  L ++L+ K FS  +I  A +            
Sbjct: 163 RQYLITERGLTEQQIKDFNLGYYRKRADLVDYLKHKKFSASEIKGAAVA---------LT 213

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260
            +   +I P     G+V+   GR   K        +         +       A+    +
Sbjct: 214 SWEGYIIIPWLDENGRVLTLYGRYSQKTAPEGRPKTLALPGISTKRAPLYLDRAIASNHR 273

Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320
                        +I VEG  D L L   G    VS +  + +  Q+  L +     V  
Sbjct: 274 ------------EVIFVEGVFDALLLQALGETRAVSGVAASFSNEQIECLKRNRIEKVYH 321

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL-SRGEDPDSFIRCYGKTAFEKLIVESL 379
               DP           ++     G  V          DPD F+   G TA ++L+ +S 
Sbjct: 322 L--GDPDGGGIGGTNSNLMRLTRSGISVYVPPTLPDVLDPDEFVLRKGITALKQLLEQSE 379

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
                  K+       ++ +   ++          I        Y            +  
Sbjct: 380 HGYRWKAKQIVAEHGNDSDEAIEKIFSIAVAYSRTIPS-----QYKLEEETFFWATIRNS 434

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS--LREAALLLTLINHPAI 497
           + E        K  AR+ D      +  Q   V        +  L E      L+     
Sbjct: 435 LGELDPEAFRAKLKARYGDTPSIPTKSGQDLKVPDWAQSSIAKWLAERY--RPLLAFNTD 492

Query: 498 LQEQYQ--ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--------GFG 547
           ++E ++   + +  +  +    +W  + ++          +IH++L E+        GF 
Sbjct: 493 IEEWFRYSAINEGIWTKDPKYYIWQIIITELE-----TLADIHEQLHEKKKRPKYGSGFI 547

Query: 548 ELLKQLDRQVRDAGLWSATTEANI 571
             ++ L +       W        
Sbjct: 548 SGIEMLLKAYLPVRGWDEQPGLLP 571


>gi|167036519|ref|YP_001664097.1| zinc finger, CHC2-family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320114950|ref|YP_004185109.1| zinc finger, CHC2-family protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855353|gb|ABY93761.1| zinc finger, CHC2-family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928041|gb|ADV78726.1| zinc finger, CHC2-family protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 203

 Score =   99 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           +   IP+   I +Y      K       +W  CPFH++K PS    +    +YCF C   
Sbjct: 12  IKDSIPLVQAI-EYYGLHPIKR---GRYHWIKCPFHNDKNPSLAIYEES--FYCFGCGAH 65

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
           GD + F++       +E+V RLA    VPLP      ++++K     IR  +     ++ 
Sbjct: 66  GDVIDFVARYFNLEPLEAVYRLAEDFNVPLPEERRLTKEEKKKIQQRIRQKQEEDKLYND 125

Query: 131 SLK 133
            LK
Sbjct: 126 FLK 128


>gi|319788811|ref|YP_004090126.1| DNA primase [Ruminococcus albus 7]
 gi|315450678|gb|ADU24240.1| DNA primase [Ruminococcus albus 7]
          Length = 207

 Score =   99 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 6  DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          +  +D+   I + +L+  Y        N  +G + ACCPFH+E+ PSF   +    Y+CF
Sbjct: 3  NIFQDIKDRIDLKDLVRYY------GLNVDRGGF-ACCPFHNERNPSFKVYEDH--YHCF 53

Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
           C   GDH  F+  L G S IE+ ++++   G+
Sbjct: 54 GCGAHGDHTDFVEKLYGVSNIEAAKKISHDFGL 86


>gi|228983124|ref|ZP_04143383.1| DNA primase [Bacillus thuringiensis Bt407]
 gi|228777307|gb|EEM25615.1| DNA primase [Bacillus thuringiensis Bt407]
          Length = 482

 Score =   99 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 72/490 (14%), Positives = 146/490 (29%), Gaps = 80/490 (16%)

Query: 5   RDFIKDLLIHI---PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE-KTPSFHCNDSKG 60
            +FI++++  +   PIS+++   +D  RR        + A CPFH++ K  SF  ++ KG
Sbjct: 6   EEFIEEVIAKVKQLPISSVMETRIDVVRRG-----HSFQAKCPFHNDNKLGSFSISNKKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------------- 107
            + CFSC   GD + F++     SF  S  ++A   G+       +              
Sbjct: 61  IFKCFSCDEGGDAVKFIAKYDKISFGASAIKIALEFGLITNEEYKEAFGDKAEVDVAETV 120

Query: 108 ----------EKKEKIQTDLIRLIEVATDFFHH-SLKNARDK---RLHYYLDERGIDSHA 153
                        E+ + D+  L  V + F    SL    DK       YL  RG+    
Sbjct: 121 RKTYIASMDKVDYEEERADIEVLHNVFSVFSKGISLCEGHDKLTEEHKAYLKGRGLSDKD 180

Query: 154 IEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRF----------- 202
           IE       P    +   +     + E       L        T   +            
Sbjct: 181 IEEDGYFSFPGRHSAFLTNFYNTMYEEFGYTPEILKDIPGFFCTENCKMDFQTKDGEITV 240

Query: 203 -------RNRLIFPIRSSRGQVIAFGGR---TLSKGESVKYLNSPETILFHKGKNLYNFF 252
                  +  +  P+++++GQ+     R            + +S       +     N  
Sbjct: 241 PIYAYRRQEGICIPMKNAKGQIAGIQIRLDEVKDSSRRYIWFSSTFADAEDRSNMYINGT 300

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
           GA   L         +   + + + EG      +        +S  G        + +  
Sbjct: 301 GAGAPL---DVVYPEKIKHTTLFITEGRFKARKIASTYGCIAISVQGIGNWRNIEKEIKD 357

Query: 313 LSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
           +  R       I + +D D       Y     +   L               D + ++  
Sbjct: 358 IEERTGYDIKHICIAYDADMSYNINVYNQFKKMTDKLKEEF-----------DKNIYVCM 406

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE--IHLKNCINHIKDQKLRYY 423
           +     + +          +  +  + +  +   +  ++      K          L+ Y
Sbjct: 407 WATELGKGIDDILENDKGNMIDKMEKTQFDSYYAQYVKMVTDKEGKKAFKEKPKPLLKAY 466

Query: 424 YSQAIRDRLQ 433
           + + +  +  
Sbjct: 467 FDREVLPKFN 476


>gi|154500297|ref|ZP_02038335.1| hypothetical protein BACCAP_03964 [Bacteroides capillosus ATCC
           29799]
 gi|150271029|gb|EDM98303.1| hypothetical protein BACCAP_03964 [Bacteroides capillosus ATCC
           29799]
          Length = 156

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 18/133 (13%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
               + +   + + +    Y ++ +R           ACCPFHD+K PS   N+   ++Y
Sbjct: 3   ESVFEAVKQSVTVRDAAQIYGIEVNRSG--------MACCPFHDDKNPSMKLNEE--YFY 52

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD + F + L   S  E+ ++LA   G+      P   +  + +++  +  E 
Sbjct: 53  CFGCGATGDVIDFTARLYNLSPKEAAEKLAQDFGLAYDSQAPPRRRYIRQKSEAQKFKED 112

Query: 124 -------ATDFFH 129
                    D+FH
Sbjct: 113 RDHTFRVLADYFH 125


>gi|260891954|ref|YP_003238051.1| zinc finger CHC2-family protein [Ammonifex degensii KC4]
 gi|260864095|gb|ACX51201.1| zinc finger CHC2-family protein [Ammonifex degensii KC4]
          Length = 200

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 10 DLLIHIPISNLIGQY---VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
           L   + +  +I  +   ++  R+       +  ACCPFH ++ PSF+ N +K  ++CF 
Sbjct: 12 QLAREVSLLEVIRHFAPGLELTRKGR-----ELVACCPFHPDREPSFYVNPAKNVFFCFG 66

Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
          C   GD + F++  LG   +E+ + +    G+
Sbjct: 67 CGAGGDGVEFVARTLGLGRLEAARAIVQEFGL 98


>gi|33595198|ref|NP_882841.1| putative DNA primase [Bordetella parapertussis 12822]
 gi|33565275|emb|CAE36074.1| putative DNA primase [Bordetella parapertussis]
          Length = 356

 Score = 99.2 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 106/382 (27%), Gaps = 68/382 (17%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF--HDEKTPSFHCNDSKG 60
                +  L   +PI+++    V    R          A C F  HD  TPSF  + ++ 
Sbjct: 16  LSDQALARLRE-LPIADVASA-VGITLRGN-------KAMC-FNGHDTATPSFTVSKARN 65

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV---PLPV----------VDPK- 106
            + CF C   GD ++ +  + G  F+++   L    G+    +P             PK 
Sbjct: 66  TWRCFGCGEYGDAITLVQKIHGLRFMDACNWLCHHFGIIGGDVPYGLRAHSLSRVTSPKP 125

Query: 107 -----IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGY 161
                         +L   +         SL          YL   GI       F +  
Sbjct: 126 VNPLPSAPSTSPDFELYTWLVARCGPVKASLGTT-------YLQTHGITPDLALRFGVVE 178

Query: 162 APDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFG 221
             D   + RE  R  G    +           + +     F                   
Sbjct: 179 LIDPVRAYRELERHWGPDRIRSAGLSGSRRALSWSGYALIFP-------FKFDAITQYLQ 231

Query: 222 GRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM 281
            R L        L+     +F+  +                    +    S + + EG  
Sbjct: 232 VRCLQISRKFLGLSGIPKPMFNSQRL------------------SQLRPGSLLHICEGVP 273

Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
           D +S+  +G+  V     T+     +  L      +V   DGD  G +       L    
Sbjct: 274 DAISMEGSGLAAVAVLGATSFRSEWVEELLPF--DLVGVPDGDAAGEKFMKC---LANEF 328

Query: 342 LIPGNRVNFVLLSRGEDPDSFI 363
                 + FV+   G D    I
Sbjct: 329 RARSKSIRFVVPPEGMDASDVI 350


>gi|256751908|ref|ZP_05492779.1| zinc finger CHC2-family protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749213|gb|EEU62246.1| zinc finger CHC2-family protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 203

 Score = 98.4 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 9/130 (6%)

Query: 7   FIKD---LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            I     +   IP+   I +Y      K       +W  CPFH++K PS    +    Y+
Sbjct: 5   TIDKFTLIKDSIPLMQAI-EYYGLHPIKK---GKYHWIRCPFHNDKNPSMVIYEE--AYH 58

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD + F++       +E+V RLA    + LP      ++++K     I+  + 
Sbjct: 59  CFGCGAHGDVIDFVAEYFNLEPLEAVYRLARDFNIFLPEEKRLTKEEKKKIQQCIQQKQE 118

Query: 124 ATDFFHHSLK 133
               ++  LK
Sbjct: 119 EDKLYNDFLK 128


>gi|322420475|ref|YP_004199698.1| DNA primase catalytic core domain-containing protein [Geobacter sp.
           M18]
 gi|320126862|gb|ADW14422.1| DNA primase catalytic core domain protein [Geobacter sp. M18]
          Length = 1100

 Score = 98.4 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 140/445 (31%), Gaps = 35/445 (7%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH 68
            L+  + I ++  + +    R T          CP H  ++  S H    K  +YCF C 
Sbjct: 14  RLVTEMDIGDVARELLP--GRITQETGQRLMCDCPNHQSQSRLSLHVMLDKQGWYCFGCG 71

Query: 69  VKGDHLSFLSALL------GCSFI------ESVQRLAAIAGVPL-------PVVDPKIEK 109
           V GD L  +  +       G S        ++   LA  AG+P             + E 
Sbjct: 72  VGGDVLQLVEFIQTGSVTAGQSGPMPDSHRQARDYLAKKAGLPPLSRFGLSQERLAQTEA 131

Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169
               +  +   +      +H  LK +  + L +   +  +    I+   +GYA ++  ++
Sbjct: 132 DRAFELRVKDALTALARLYHARLKESP-EVLDWLKSKYALSEETIDDLLIGYADNASGAV 190

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
            +    +G   ++ + A       +       F  R++FP   SRG+V+   GR      
Sbjct: 191 AQLTEGEGGFSKRELAATGAFRPTSQDGLTPFFERRIVFPYW-SRGRVVFMIGRKTPWTP 249

Query: 230 SVKYLNS--PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
            V +      +  +  + +  Y      N L     +D        +I+ EG  D L+L 
Sbjct: 250 DVGWEQGKYKKLPVHDEHQRPYVADFINNAL--LFNEDCLLAKPGKVIITEGVTDCLALM 307

Query: 288 QAGVQNVVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
           Q G+  V             RL+        V     ++        A+           
Sbjct: 308 QLGLPTVSPVTVRIRAADWERLIPKLRGVETVYICQDNELSQAGLKGALQTARTLAEHKI 367

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
               V L     P S  +   +    +    +  +      +    R          L  
Sbjct: 368 DTRLVTL-----PLSETQISARQELTERFSLAASVGPKELAKLLSGRPAEEIQAAEALLA 422

Query: 407 HLK-NCINHIKDQKLRYYYSQAIRD 430
             K +  ++I     R  + + + +
Sbjct: 423 TAKIDVNDYIAAGHTREDFERLLAE 447


>gi|255316548|ref|ZP_05358131.1| DNA primase [Clostridium difficile QCD-76w55]
          Length = 457

 Score = 98.4 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 66/462 (14%), Positives = 135/462 (29%), Gaps = 58/462 (12%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKT-PSFHCNDSKGFYY 63
           ++ I+ +   + I   I   +D                CPFH++K   SF  + +K  + 
Sbjct: 8   KEIIELVREVVGIDE-IESRMDLKNG---------KGLCPFHNDKRIGSFSVSKNKKIFK 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESV--------------------QRLAAIAGVPLPVV 103
           CFSC   GD + F+S     +++ES                     ++L+    + +   
Sbjct: 58  CFSCGTGGDIIKFVSLFENITYVESAFKIALEKRLISEEKYKQILSKKLSESENLKIEKT 117

Query: 104 DPKI-----EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMF 157
             K      + K+     L ++  +    F +  KN  ++    +L ++RG+    IE  
Sbjct: 118 YIKQNLIEHQSKKADNETLNKIYSLFIKGFDYLGKNRLNEEDIKHLKNKRGLTDKEIEDT 177

Query: 158 KLGYAPD----SRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS 213
                P+      +           S    I        +N        R  +  PIR+ 
Sbjct: 178 GYFSFPNRYILKPFLTDLEKNNIKLSTLNNIPGFFYNKKNNRYDFTTIKRGGIAIPIRNE 237

Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273
             Q+I    R               +    + +    +    +                 
Sbjct: 238 FKQIIGIQIRKNVVNSHESRYIWFSSAFAQENE---GYKFGTSAGVSVDVIYPEELKVKT 294

Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLS--------PRIVLCFDGDD 325
           I + EG+     + +      +S  G       + ++  +         P I + FD D 
Sbjct: 295 IFITEGHFKAKKIAKEYNSIAISIQGVCAWGNIIEVIKNIQKLYSEVELPYIYVAFDADM 354

Query: 326 PGL----RAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
                  + A K  + +                 G+  D  I    K   +K+  + +  
Sbjct: 355 GYNLAVYKQALKLGEALQKIENKKIFYVLWDSDFGKGIDDLIDNGKKDMVDKISFDEMNT 414

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
               +     +       +  +     K     I  ++L+ Y
Sbjct: 415 YYNKYIEILISLFGPDEKKYPKEAK--KELYEQIILRQLKKY 454


>gi|289812425|ref|ZP_06543054.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 169

 Score = 98.0 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 93/166 (56%), Gaps = 2/166 (1%)

Query: 98  VPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMF 157
           +P        + +   + +L +L+    DF+  SL +   K    YL +RG+ +  I+ F
Sbjct: 1   MPYEAGTGLSQIERHQRQNLYQLMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRF 60

Query: 158 KLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217
            +G+AP    +  +       ++  +++AG+L+  +   ++YDRFRNR++FPIR  RG+V
Sbjct: 61  AIGFAPPGWDNALKRFGNNSDNKALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRV 119

Query: 218 IAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIR 263
           I FGGR L   ++ KYLNSPET +FHKG+ LY  + A  Y  +  R
Sbjct: 120 IGFGGRVL-GNDTPKYLNSPETDIFHKGRQLYGLYEAQQYSAEPQR 164


>gi|295099472|emb|CBK88561.1| DNA primase (bacterial type) [Eubacterium cylindroides T2-87]
          Length = 1133

 Score = 97.7 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFHD+K PS   +     ++CF C   GD + F + L   S  E+ ++LA   G+ 
Sbjct: 31  MACCPFHDDKNPSMKVD---QRFHCFGCGADGDVIDFTAKLFNLSPKEAAEKLAQDFGLI 87

Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129
                P   +  + +T+  +  E     + 
Sbjct: 88  YDSQAPPRRRYVRQKTEAQKFREDRQRCYR 117


>gi|313623756|gb|EFR93896.1| DNA primase [Listeria innocua FSL J1-023]
          Length = 222

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 82/232 (35%), Gaps = 25/232 (10%)

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463
            +     R  Y + + D  +   +    +     +   K  +++    P           
Sbjct: 1   KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNTHKERQNQSYNEPPIDDSFMGMIP 60

Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                ++ S     +     +  E  L+  ++ +        Q L D  + ++  Q L++
Sbjct: 61  QEDSEMLFSFEQPTQKLSAHTTAEQQLMKAMMENRDSFLLIKQLLGDTEFYHDNYQALYT 120

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
           +L   F E     P +    + + G   L+  L+  +                 +  ++ 
Sbjct: 121 YLIGYFAEGNDADPHKFMDSVPDAGMKGLISSLEMVIS-----------PDEQGKTQFED 169

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +   KRF+ L + K+E+E+Q+A    + + E    ++  + +++ +++  +
Sbjct: 170 YIKSLKRFK-LEQAKKELEQQLAAFNRENDKENEIRVMLEIVQLNRKLNNGQ 220


>gi|332653621|ref|ZP_08419365.1| putative CHC2 zinc finger containing protein [Ruminococcaceae
           bacterium D16]
 gi|332516707|gb|EGJ46312.1| putative CHC2 zinc finger containing protein [Ruminococcaceae
           bacterium D16]
          Length = 1016

 Score = 96.5 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 25/136 (18%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  + +   +   +    Y ++  R           ACCPFHD+K PS   +     ++
Sbjct: 3   ENVFEAVKQSVSTRDAAAFYGIEVKRNG--------MACCPFHDDKNPSMKVD---QRFH 51

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----------KIEKKEKI 113
           CF C   GD + F + L   S  E+ ++LA   G+      P          + ++  + 
Sbjct: 52  CFGCGEDGDVIDFTAKLFDLSPKEAAEKLAQDFGLIYDSQAPPRRRYVRQKTEAQQFRED 111

Query: 114 QTDLIRLIEVATDFFH 129
           +    R++   +D++H
Sbjct: 112 RQRCYRVL---SDYYH 124


>gi|160914083|ref|ZP_02076310.1| hypothetical protein EUBDOL_00096 [Eubacterium dolichum DSM 3991]
 gi|158434016|gb|EDP12305.1| hypothetical protein EUBDOL_00096 [Eubacterium dolichum DSM 3991]
          Length = 1133

 Score = 96.5 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  + +   +   +    Y ++  R           ACCPFHD+K PS   +     ++
Sbjct: 3   ENVFEAVKQSVSTRDAAAFYGIEVKRNG--------MACCPFHDDKNPSMKVD---QRFH 51

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD + F + L   S  E+ ++LA   G+      P   +  + + +  +  E 
Sbjct: 52  CFGCGEDGDVIDFTAKLFDLSSKEAAEKLAQDFGLIYDSQAPPRRRYVRQKNEAQKFRED 111

Query: 124 ATDFFH 129
               + 
Sbjct: 112 RQRCYR 117


>gi|282600626|ref|ZP_05979268.2| putative CHC2 zinc finger protein [Subdoligranulum variabile DSM
           15176]
 gi|282571644|gb|EFB77179.1| putative CHC2 zinc finger protein [Subdoligranulum variabile DSM
           15176]
          Length = 1094

 Score = 96.5 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 25/136 (18%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  + +   +        Y +   R           ACCPFHD+K PS   +     ++
Sbjct: 3   ENVFEAVKQSVSTREAAELYGIKVKRNG--------MACCPFHDDKNPSMKVD---QRFH 51

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----------KIEKKEKI 113
           CF C   GD + F + L   S  E+ ++LA   G+      P          + +K  + 
Sbjct: 52  CFGCGEDGDVIDFTAKLFDLSSKEAAEKLAQDFGLIYDSQAPPRRRYVRQKTEAQKFRED 111

Query: 114 QTDLIRLIEVATDFFH 129
           +    R++   +D++H
Sbjct: 112 RQRCYRVL---SDYYH 124


>gi|307591304|ref|YP_003900103.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7822]
 gi|306986158|gb|ADN18037.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7822]
          Length = 999

 Score = 96.5 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 85/535 (15%), Positives = 156/535 (29%), Gaps = 49/535 (9%)

Query: 32  TNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHLSFLSALL--------G 82
                G      PF   K+  SF      GF+        G    ++ ++         G
Sbjct: 44  RPDATGKLRGVPPFRHSKSGTSFTVFPDGGFF-DAGDGFAGCAADYIHSINRGGWERARG 102

Query: 83  CSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRL 140
             F+ +V+ L  +A +P P     P+  +K       ++++          L +      
Sbjct: 103 RDFLNAVKELCELATIPFPEKTLSPQEIEKAHKWETKLQILAATNKICSDVLSSELGIVA 162

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
             YL      +              R  + ++L+ KGF+  +I EAG+            
Sbjct: 163 REYLINERGLTEQQIKDFNLGYYRKRSDVVDYLKHKGFTATEIKEAGVAQQK-------- 214

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260
            +   +  P    RG+ +   GR   K        +         ++      AL    +
Sbjct: 215 -WEGYITIPWLDERGRPLTLYGRYHKKVAPEGLPKTLALPGTSTKRSPLYLDRALAAGHR 273

Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320
                        +I VEG  D L L   G   VVS +  + +  Q+  L +     V  
Sbjct: 274 ------------EVIFVEGVFDALLLQALGETRVVSGVAASFSNEQIETLKRNRIEKVY- 320

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380
             GD  G        +L+       +      L  G DPD F+   G  A + LI +S  
Sbjct: 321 HLGDPDGGGIGGTNSNLMRLSREGISVYVPPTLPDGLDPDEFVNLQGIDALKSLIDQSEH 380

Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                 K+       N+     ++          I       +Y            + ++
Sbjct: 381 GYRWKAKQIINEYGTNSDAAIEKILTEAVAYSKTIP-----AHYKLEAETFFWNTIRGHL 435

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLSKKPSLREAALLLTLINHPAILQ 499
            E +   R   +         P+       L      +    L E      ++     ++
Sbjct: 436 GEDAEAFRASLEMKYGNSSLIPNDEKDNLGLPVWAASNIAVWLAERY--RCVLAWNTQIE 493

Query: 500 EQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           E Y+  A     +       +W  + ++          +I Q+L E+        
Sbjct: 494 EWYRYAAQSEGVWSKEPKYYIWQIIITELE-----TLADIRQQLDEKNQRPTYSS 543


>gi|269926865|ref|YP_003323488.1| zinc finger CHC2-family protein [Thermobaculum terrenum ATCC
          BAA-798]
 gi|269790525|gb|ACZ42666.1| zinc finger CHC2-family protein [Thermobaculum terrenum ATCC
          BAA-798]
          Length = 654

 Score = 96.5 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 4  PRDFIKDLLIHIPISNLIGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
          P   I+ +   + +++L+ ++  +  R       G   A CPFH EKTPS     S+  +
Sbjct: 29 PTTDIRQIKSKLDLASLVERHAGELRREG-----GYLKALCPFHKEKTPSLAIYPSRQRW 83

Query: 63 YCFSCHVKGDHLSFL 77
           CF C  KGD + FL
Sbjct: 84 QCFGCDRKGDVIDFL 98


>gi|144138|gb|AAA73233.1| DNA primase [Buchnera aphidicola]
          Length = 319

 Score = 96.5 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 62/324 (19%), Positives = 139/324 (42%), Gaps = 27/324 (8%)

Query: 275 ILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA 334
           ++VEGY+DV+ L Q  ++ VVSSLGT++T+  +++L++ +  ++ C+DGDD G  A+++ 
Sbjct: 1   LVVEGYIDVIMLTQYNIEYVVSSLGTSITKEHIQILFRHTNTVIYCYDGDDAGRNASWRT 60

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
           + + L ++     + F++L   EDPD+ I+  G+  F+  I  +L +    +K   +N  
Sbjct: 61  LKIALPYISDKKNIKFIILPNNEDPDTIIKKEGQKKFQLRIDNALTMSKFFFKNILKNVD 120

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
            ++ D++  L +     IN I    +R Y  Q +   +  +      +        KK+ 
Sbjct: 121 LSSDDDKFHLSVRALPLINCISSDTIRIYLRQILARTIGIVDDYQFEKFLYEKERKKKSL 180

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
           + + +  P                        L+  LI +P + +      +  +++N +
Sbjct: 181 QFQIKHTPM---------------------RTLIGLLIQNPNLARLVP---STKKFENEK 216

Query: 515 LQKL--WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
           +Q L  +  +     +   F   ++ +         +LK L +      +        + 
Sbjct: 217 IQGLPIFLEILKTCSDNPNFNTGQLLEFYRYSKIINILKILSKWDHMI-IKEKIQNMFLD 275

Query: 573 DVRQGYQQALALYKRFRLLSRQKE 596
            ++  Y + L   +   +   + +
Sbjct: 276 LLKNTYSKILEKRQEKLIAKERIQ 299


>gi|166033470|ref|ZP_02236299.1| hypothetical protein DORFOR_03196 [Dorea formicigenerans ATCC
           27755]
 gi|166026655|gb|EDR45412.1| hypothetical protein DORFOR_03196 [Dorea formicigenerans ATCC
           27755]
          Length = 1094

 Score = 96.5 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  + +   +        Y ++  R           ACCPFHD+K PS   +     ++
Sbjct: 3   ENVFEAVKQSVSTREAAEFYGIEVKRNG--------MACCPFHDDKNPSMKVD---QRFH 51

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD + F + L   S  E+ ++LA   G+      P   +  + +T+  +  E 
Sbjct: 52  CFGCGADGDVIDFTAKLFNLSPKEAAEKLAQDFGLIYDSQAPPRRRYVRQKTEAQKFREN 111

Query: 124 ATDFFH 129
               + 
Sbjct: 112 RQRCYR 117


>gi|302343260|ref|YP_003807789.1| DNA primase catalytic core domain protein [Desulfarculus baarsii
           DSM 2075]
 gi|301639873|gb|ADK85195.1| DNA primase catalytic core domain protein [Desulfarculus baarsii
           DSM 2075]
          Length = 1104

 Score = 96.5 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 140/445 (31%), Gaps = 35/445 (7%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH 68
            L+  I I ++  + +    R T          CP H  ++  S H    K  +YCF C 
Sbjct: 14  RLVTEIDIGDVARELLP--GRITQETGQRLMCDCPNHQSQSRLSLHVMLDKQGWYCFGCG 71

Query: 69  VKGDHLSFLSALL------GCSFI------ESVQRLAAIAGVPL-------PVVDPKIEK 109
           V GD L  +  +       G S        ++   LA  AG+P             + E 
Sbjct: 72  VGGDVLQLVEFIQTGSVTAGQSGPMPDSHRQARDYLAKKAGLPPLSRYGLSQERLAQTEA 131

Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169
               +  +   +      +H  LK +  + L +   +  +    I+   +GYA ++  ++
Sbjct: 132 DRAFELRVKDALTALARLYHARLKESP-EVLDWLKSKYALSEETIDDLLIGYADNASGAV 190

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
            +  R +    ++ + A       +       F  R++FP   SRG+V+   GR      
Sbjct: 191 AQLTRGEDGFSKRELAATGAFRPTSQDGLTPFFERRIVFPYW-SRGRVVFMIGRKTPWTP 249

Query: 230 SVKYLNS--PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
            V +      +  +  + +  Y      N L     +D        +I+ EG  D L+L 
Sbjct: 250 DVGWEQGKYKKLPVHDEHQRPYVADFINNAL--LFNEDCLLARPGKVIITEGVTDCLALM 307

Query: 288 QAGVQNVVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
           Q G+  V             RL+        V     ++        A+           
Sbjct: 308 QLGLPTVSPVTVRIRAADWERLIPKLRGVETVYICQDNELSQAGLKGALQTARTLAEHKI 367

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
               V L     P S  +   +    K    +  +      +    R          L  
Sbjct: 368 DTRLVTL-----PLSETQISARQELTKRFGLTASVGPKELAKLLAGRPAEEIQAAEALLA 422

Query: 407 HLK-NCINHIKDQKLRYYYSQAIRD 430
             K +  ++I     R  + + + +
Sbjct: 423 TAKIDVNDYIAAGHTREDFERLLAE 447


>gi|313618910|gb|EFR90771.1| DNA primase [Listeria innocua FSL S4-378]
          Length = 222

 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 80/225 (35%), Gaps = 25/225 (11%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS-------------Q 464
              R  Y + + D  +   +    +     +   K  +++    P               
Sbjct: 5   AVERELYLKQLADEFELTIETLKQQLQQSLKNTHKERQNQSYNEPPIDDSFMGMIPQEDS 64

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
            ++ S     +     +  E  L+  ++ +        Q L D  + ++  Q L+++L  
Sbjct: 65  EMLFSFEQPTQKLSAHTTAEQQLMKAMMGNRDSFLLIKQLLGDTEFYHDNYQALYTYLIG 124

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
            F E     P +    + + G   L+  L+  +                 +  ++  +  
Sbjct: 125 YFAEGNDADPHKFMDSVPDAGMKGLISSLEMVIS-----------PDEQGKTQFEDYIKS 173

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            KRF+ L + K+E+E+Q+A    + + E    ++  + +++ +++
Sbjct: 174 LKRFK-LEQAKKELEQQLAAFNRENDKENEIRVMLEIVQLNRKLN 217


>gi|31442394|ref|NP_852618.1| putative DNA primase [Peanut witches'-broom phytoplasma]
 gi|31335129|gb|AAP44294.1| putative DNA primase [Peanut witches'-broom phytoplasma]
          Length = 379

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 126/367 (34%), Gaps = 49/367 (13%)

Query: 43  CPFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG---- 97
           CPFHD K+  S   N     + C+SC    D ++    + G  F +S+  L         
Sbjct: 32  CPFHDSKSGLSADINRQNKIW-CWSCGKAFDTMTVYQKITGKDFAQSLTDLTNFYQSTEY 90

Query: 98  --VPLPVVDPKIEKKEKIQT---------------DLIRLIEVATDFFHHSLKNARDKRL 140
             +           K                     ++ + +  + F+   L        
Sbjct: 91  QELTASAFTGNESFKLSNNENKALNNFANSNLHLDTILAIWDEISHFYQKQLWATPAALD 150

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
            Y L +R ++   I+ F++G+A  +  +L  +L  +           LL        SYD
Sbjct: 151 -YLLKKRQLNPLLIKKFQIGFANKNNQNLLNYLENQQADLTPYYAVDLLRKNPKF--SYD 207

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSK------GESVKYLNSPETILFHKGKNLYNFFGA 254
              N  + P+    G++I +  R           +     N     +F      Y F  A
Sbjct: 208 GCLNCWLIPVFDENGKIIHYY-RFHYPAELPYRPKYQALRNLTNQTIFS---IPYGFHYA 263

Query: 255 LNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL--RLLWK 312
              +            +   IL EG+ DVL   Q  ++NV+  +  +            K
Sbjct: 264 KKAI----------LDTQTAILHEGFFDVLQSYQNQIENVIGLITVSNNFSPFILDFFKK 313

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFE 372
              +++L  D D+ GL+ A++    +    I    +  +     +D D  +R YG   ++
Sbjct: 314 YQIKVILGLDNDETGLKTAFRLSQQLKRLNIEN-YIKTIPHYDCKDADELLRKYGLKTYQ 372

Query: 373 KLIVESL 379
           K+ +ES 
Sbjct: 373 KIYLESK 379


>gi|223985011|ref|ZP_03635109.1| hypothetical protein HOLDEFILI_02413 [Holdemania filiformis DSM
           12042]
 gi|223962983|gb|EEF67397.1| hypothetical protein HOLDEFILI_02413 [Holdemania filiformis DSM
           12042]
          Length = 1016

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  + +   +        Y ++  R           ACCPFHD+K PS   +     ++
Sbjct: 3   ENVFEAVKQSVSTREAAAFYGIEVKRNG--------MACCPFHDDKNPSMKVD---QRFH 51

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD + F + L   S  E+ ++LA   G+      P   +  + +T+  +  E 
Sbjct: 52  CFGCGADGDVIDFTAKLFDLSPKEAAEKLAQDFGLIYDSQAPPRRRYVRQKTEAQKFRED 111

Query: 124 ATDFFH 129
               + 
Sbjct: 112 RQQCYR 117


>gi|326390616|ref|ZP_08212171.1| DNA primase [Thermoanaerobacter ethanolicus JW 200]
 gi|325993294|gb|EGD51731.1| DNA primase [Thermoanaerobacter ethanolicus JW 200]
          Length = 198

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 11  LLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69
           +  +I +   I  Y     R+        YW  CPFH EK PSF  N     + CF C V
Sbjct: 12  VKENIDLMEAIEYYGFQPIRKGR-----YYWLLCPFHSEKHPSFCIN--GNTFKCFGCGV 64

Query: 70  KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            GD ++F+S L     I++V RL    G+ LP      +   K + +   +
Sbjct: 65  HGDVINFVSLLFNLKPIDAVYRLVTDFGIDLPYAKKIDKIYCKAKQNYEDI 115


>gi|308271319|emb|CBX27927.1| hypothetical protein N47_G32510 [uncultured Desulfobacterium sp.]
          Length = 612

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 89/528 (16%), Positives = 165/528 (31%), Gaps = 85/528 (16%)

Query: 34  AVKGDYWACCPFHDEKTPSFHCN---DSKGFYYCFS-CHVKGDHLSFLSALLGCSFIESV 89
                Y A CPFH +   SF        +  ++CF  CH   D    +     C F E+ 
Sbjct: 35  TGDKRYSAYCPFHSDNKDSFRVYVNGKDEVRFHCFGACHSDWDIYEIIMLRNKCGFKEAQ 94

Query: 90  QRLAAIAGVP-----------LPVVDPKIEKKE-------KIQTDLIRLIEVATDFFHHS 131
           +  +   G+            +P  D + E  +       ++  ++I  ++   +F++  
Sbjct: 95  KVWSEYLGIKDFSPFNGKSSHIPEPDTEHEPDDDVSFAEPEVDNEIITALDEGANFYNKL 154

Query: 132 LKNARDKRLHYYLD--ERGIDSHAIEMFKLGYAPDSRYSLRE------------------ 171
           L +  +K    +     RG+    I  F +GYAP     L E                  
Sbjct: 155 LLSNEEKFKDIFAYLLRRGVGKELISKFNIGYAPPYSDELYEGRALIYNFLSRFEDDYKT 214

Query: 172 -------------HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218
                        +            +         S ++ D F  ++IFPI +  G + 
Sbjct: 215 FNPFFKASLVRLLNDETSKAYFYYRSQIDFSKKDMFSNSNGDYFAGKIIFPIYNIDGSIA 274

Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278
              GR       ++++ +           LY    A  Y++              +ILVE
Sbjct: 275 GIIGRR-PDNRGMRWMKTKTDTSMSTKSWLYGIDKASRYIK----------QYRAVILVE 323

Query: 279 GYMDVLSLCQ----AGVQNVVSSLGTALTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAYK 333
           G  D  +            V+S+LG+ LT+  L +L        V+ +DGD+ G +   K
Sbjct: 324 GIFDYFAFYNILQDQEKPIVLSTLGSHLTKEALNILKSLGVKHFVVAYDGDEAGRKGILK 383

Query: 334 AIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC-------YGKTAFEKLIVESLPLVDMLW 386
               V      G       L  G+DP   ++        +          +     D   
Sbjct: 384 IASEV-----EGKVYFLGGLKEGQDPYDMLKHAVNAINGFSLDRLMTSASKMQEKTDKPV 438

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE--HS 444
                +R  +   +         N  + +K +     +   + D L  L   +  +    
Sbjct: 439 NIHIMSRGSSKRSDVVFEATDTGNTYDFLKGKSDAKEFIYDVNDFLPLLAYDHSNKVMLD 498

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
              +   K    R +K  S+++    +   K      L +A +L   +
Sbjct: 499 ENLQQIIKLLEARPEKPKSEKVFTIPVNFLKTEGYDDLGQALILWIRL 546


>gi|332655440|ref|ZP_08421178.1| putative CHC2 zinc finger containing protein [Ruminococcaceae
           bacterium D16]
 gi|332515627|gb|EGJ45239.1| putative CHC2 zinc finger containing protein [Ruminococcaceae
           bacterium D16]
          Length = 1122

 Score = 95.3 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFHD+K PS   +     ++CF C   GD + F + L   S  E+ ++LA   G+ 
Sbjct: 31  MACCPFHDDKNPSMKVD---QRFHCFGCGADGDVIDFTAKLFDLSPKEAAEKLAQDFGLI 87

Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129
                P  ++  + +T+  +  E     + 
Sbjct: 88  YDSQAPPRKRYVRQKTEAQKFREDRQRCYR 117


>gi|297618194|ref|YP_003703353.1| DnaB domain protein helicase [Syntrophothermus lipocalidus DSM
           12680]
 gi|297146031|gb|ADI02788.1| DnaB domain protein helicase domain protein [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 800

 Score = 95.3 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 101/502 (20%), Positives = 163/502 (32%), Gaps = 73/502 (14%)

Query: 31  KTNAVKGDYWACCP--FHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88
                   Y A CP   H++K PSF+    + + +CF+C  K      L    G    + 
Sbjct: 26  GFKRSGSGYIARCPCETHEDKHPSFYMPAGRPYGFCFACGFKQSWWDVL-ESRGLRGWQV 84

Query: 89  VQRLAAIAGV---------PLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKR 139
           V+ LA +AGV          +     +++   + + D       A               
Sbjct: 85  VEELAKMAGVAPPPRSHSGEVEGEAGEVKDDGREREDWWETRRRAV-------WEPEGAD 137

Query: 140 LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSY 199
           +  YL  RG     I+   +G  P S   +   L+  G  E                   
Sbjct: 138 VLDYLRSRGYSDDLIQRMDVGARPVSEAGVPAGLKLPGGPEY------------------ 179

Query: 200 DRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQ 259
                RL+ P RS  G+++A  GR L  GE  +Y+  P       G+ L           
Sbjct: 180 -----RLLVPFRSRGGRLVAVAGRRLDGGEP-RYMYPPGM-----GRALLGQHVLRRDA- 227

Query: 260 KSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVL 319
                          ++VEG MD + L  AGVQ VV+  G   +  Q+ +L +   R+VL
Sbjct: 228 -------------VPVVVEGLMDAIVLEAAGVQGVVALGGAQASGGQIEVLRQ-YQRVVL 273

Query: 320 CFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG-EDPDSFIRCYGKTAFEKLIVES 378
             D DD G     +   LV   +  G +        G +DPD   R  G +   + I  +
Sbjct: 274 ALDADDAGRAGTER---LVRALVRSGVKTYVAEWVGGAKDPDELFRTAGASPIREAIENA 330

Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNC-INHIKDQKLRYYYSQAIRDRLQQLFQ 437
                 L +R          +    LE  L  C +   +         + +    +   +
Sbjct: 331 TAGHKWLIRRLAPGPGATDQERDESLEKALDFCEVLARRSPAAAEDAVREMAAVYRLTVE 390

Query: 438 KYITEHSGYGRYW---KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-AALLLTLIN 493
               E     R     ++  R +D    +QR +    ++        + E   +LL +  
Sbjct: 391 ALGEEVQRLARKRAEEEEKKRWQDALLAAQRAVVEGKIEKAREMVRKVEETRPVLLPIPA 450

Query: 494 HPAILQEQYQELADIRYDNNEL 515
            P  L     E      D    
Sbjct: 451 DPEFLLRAAAE-TKDGLDTPWY 471


>gi|265763837|ref|ZP_06092405.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256445|gb|EEZ27791.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 1017

 Score = 95.3 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 14/109 (12%)

Query: 1   MNYPRDFIKDLLIHIP--ISNLIGQYVDWDRRKTNAVKGDYWACCPFHD--EKTPSFHCN 56
           M +  D I+ +       + ++   + +  R   N     Y   CP     +K      +
Sbjct: 1   MYFNDDEIRRIKDAATGHLLDVAQDFHELKRSGVN-----YNCDCPRCKAAKK---LSIS 52

Query: 57  DSKGFYYCFSCH--VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV 103
            +K  + CF C+    GD +SFL +  G +F ++++ LA    V L   
Sbjct: 53  PAKQIFKCFGCNELKGGDSVSFLMSAEGMTFNDALEYLAKKFNVILDQR 101


>gi|289804469|ref|ZP_06535098.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 193

 Score = 95.3 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 89/189 (47%)

Query: 270 SSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLR 329
               +++VEGYMDV++L Q  +   V+SLGT+ T   + +L++ +  ++ C+DGD  G  
Sbjct: 5   EPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTADHMHMLFRATNNVICCYDGDRAGRD 64

Query: 330 AAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRE 389
           AA++A++  + ++  G +V F+ L  GEDPD+ +R  GK AFE  + ++ PL   L+   
Sbjct: 65  AAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVRKEGKAAFEARMEQAQPLSTFLFNSL 124

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
                 ++PD   +L       IN +     R    Q +  +L       +         
Sbjct: 125 LPQVDLSSPDGSTQLAALALPLINQVPGDTHRIQLRQTLGLKLGIFDDSQLDRLVPKQAE 184

Query: 450 WKKNARHRD 458
              +     
Sbjct: 185 SGVSRPAPQ 193


>gi|218442838|ref|YP_002381158.1| DNA primase [Cyanothece sp. PCC 7424]
 gi|218175196|gb|ACK73928.1| DNA primase catalytic core domain protein [Cyanothece sp. PCC 7424]
          Length = 1117

 Score = 95.3 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 85/513 (16%), Positives = 156/513 (30%), Gaps = 58/513 (11%)

Query: 32  TNAVKGDYWACCPFHDEKT-PSFHCNDSKGFYYCFSCHVKGDHLSFLSALL--------G 82
            +   G      PF + K+  SF      GF+        G    ++ +L         G
Sbjct: 44  KSDATGKLRGIPPFRESKSETSFTVFPDGGFF-DAGDGFGGYAPDYIHSLKIGRWERARG 102

Query: 83  CSFIESVQRL---------AAIAGVPLPVVD--PKIEKKEKIQTDLIRLIEVATDFFHHS 131
             F+ +V+ L         A  AG+P P +       +K +   +   ++         +
Sbjct: 103 RDFVAAVRELCALAKPDPQADRAGIPFPELSLSQSEIEKAQKSENRRGILACLIKLGQDT 162

Query: 132 LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191
           L +        YL      +              R  + ++L+ KG++  +I EAG+ + 
Sbjct: 163 LWSEFGTAARDYLINERGLTEQQIKDFHLGYYRKRSDVVDYLKHKGYTATEIKEAGVALK 222

Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI-LFHKGKNLYN 250
                     +   +I P     G+ +   GR   K        +     +  K   LY 
Sbjct: 223 K---------WEGYIIIPWLDEGGRPLTLYGRYHQKTAPEGLPKTLALPGIGTKRSPLY- 272

Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310
              A+    K             +I VEG  D L L   G    +S +  + +  Q+  L
Sbjct: 273 LDRAIAAGHK------------EVIFVEGVFDALLLQALGETRAISGVAASFSNEQIETL 320

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
            +     V    GD  G        +L        +     +L    DPD F+  +G  A
Sbjct: 321 KRNRIEKVY-HLGDPDGGGIGGTNSNLTRLLKACISVYVPPMLPDSLDPDEFVIRHGIEA 379

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ-----------K 419
            ++LI  S   +     +       +T   +  +        N +  Q           +
Sbjct: 380 LKELIERSHHGLRWKAAQIVNKCGLDTDAAKERVLREALEVANSVPSQYKLELETFFWGE 439

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           +R        D  ++L ++ I   +        +A   D   P+    Q         K+
Sbjct: 440 IRATMGDMDIDEFRELLERQINNDAQTLS--DSSADIPDSFSPNSEYTQQVYNVLYRDKR 497

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDN 512
               E  L     NH    ++  ++     + N
Sbjct: 498 WICVEGKLYYWETNHYEHSKDVVEKKRIRDFLN 530


>gi|300088766|ref|YP_003759288.1| DNA primase catalytic core domain-containing protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528499|gb|ADJ26967.1| DNA primase catalytic core domain protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 1104

 Score = 95.3 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 139/445 (31%), Gaps = 35/445 (7%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH 68
            L+  + I ++  + +    R T          CP H  ++  S H    K  +YCF C 
Sbjct: 14  RLVTEMDIGDVARELLP--GRITQETGQRLMCDCPNHQSQSRLSLHVMLDKQGWYCFGCG 71

Query: 69  VKGDHLSFLSALL------GCSFI------ESVQRLAAIAGVPL-------PVVDPKIEK 109
           V GD L  +  +       G S        ++   LA  AG+P             + E 
Sbjct: 72  VGGDVLQLVEFIQTGSVTAGQSGPMPDSHRQARDYLAKKAGLPPLSRYGLSQERLAQTEA 131

Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169
               +  +   +      +H  LK +  + L +   +  +    I+   +GYA ++  S+
Sbjct: 132 DRAFELRVKDALTALARLYHARLKESP-EVLDWLKSKYALSEETIDDLLIGYADNASGSV 190

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
            +    +    ++ + A       +       F  R++FP   SRG+V+   GR      
Sbjct: 191 AQLTEGEDGFSKRELAATGAFRPTSQDGLTPFFERRIVFPYW-SRGRVVFMIGRKTPWTP 249

Query: 230 SVKYLNS--PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
            V +      +  +  + +  Y      N L     +D        +I+ EG  D L+L 
Sbjct: 250 DVGWEQGKYKKLPVHDEHQRPYVADFINNAL--LFNEDCLLARPGKVIITEGVTDCLALM 307

Query: 288 QAGVQNVVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
           Q G+  V             RL+        V     ++        A+           
Sbjct: 308 QLGLPTVSPVTVRIRAADWERLIPKLRGVETVYICQDNELSQAGLKGALQTARTLAEHKI 367

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
               V L     P S  +   +    +    +  +      +    R          L  
Sbjct: 368 DTRLVTL-----PLSETQISARQELTERFGLTASVGPKELAKLLAGRPAEEIQAAEALLA 422

Query: 407 HLK-NCINHIKDQKLRYYYSQAIRD 430
             K +  ++I     R  + + + +
Sbjct: 423 TAKIDVNDYIAAGHTREDFERLLAE 447


>gi|154502926|ref|ZP_02039986.1| hypothetical protein RUMGNA_00747 [Ruminococcus gnavus ATCC 29149]
 gi|153796465|gb|EDN78885.1| hypothetical protein RUMGNA_00747 [Ruminococcus gnavus ATCC 29149]
          Length = 1201

 Score = 95.3 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 12/126 (9%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  + +   +        Y ++  R           ACCPFHD+K PS   +     ++
Sbjct: 3   ENVFEAVKQSVSTREAAAFYGIEVKRNG--------MACCPFHDDKNPSMKVD---QRFH 51

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD +   + L   S  E+ ++LA   G+      P   K  + +T+  +  E 
Sbjct: 52  CFGCGADGDVIDLTAQLYNLSPKEAAEKLAQDFGLIYDSQAPPRRKYVRQKTEAQKFRED 111

Query: 124 ATDFFH 129
               + 
Sbjct: 112 RQRCYR 117


>gi|217973530|ref|YP_002358281.1| P4 family phage/plasmid primase [Shewanella baltica OS223]
 gi|217498665|gb|ACK46858.1| phage/plasmid primase, P4 family [Shewanella baltica OS223]
          Length = 900

 Score = 95.0 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 138/397 (34%), Gaps = 70/397 (17%)

Query: 2   NYPRDFIKDL-----LIHIPISNLIGQYVDWDRRKTNAVKGDYWAC----CPF------- 45
            +  + + ++          +  LI + VD    K      DY       CPF       
Sbjct: 11  RFNHETLNEIGLEGVKALYDLPELIAKLVD---NKIKPTSSDYCQLEDDVCPFCGHAGCF 67

Query: 46  ---HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL--GCSFIESVQRLAAIA-GVP 99
              HD+         +   Y+C+SC   GD  SFL+        +  + + LA    G+ 
Sbjct: 68  KIYHDD--------PADQNYHCYSCAEHGDIYSFLTCYDLADNPYDAANKLLAGEIEGIS 119

Query: 100 LPVVDPKIEKKEKIQTDL--------IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDS 151
           +    PK +K +  + +L          L++ A + +   +   + K     +++R    
Sbjct: 120 I-NTQPKSKKVKPEKLELTEEQFLRRQDLMDAACEHYLEPMIADKSKPFAALMEKRKFSP 178

Query: 152 HAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIR 211
             +    +GY   S+  L   L  +GFS  ++  +GL+ +G ++ + +   R+  IFP  
Sbjct: 179 EVLFDNDIGY---SQGQLWCALEAQGFSRNEMYASGLVKEGQSNPSDFFP-RDVYIFPHY 234

Query: 212 SSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271
              G +  F  +   K +                   Y                   N +
Sbjct: 235 DEDGNLCRFTFKDPKKEKQ------------------YQMPKQFWLNDIQFYGQHLINDA 276

Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLR 329
             + +VEG  D L+L     +  V +    L++ QL  + +     +++  FD D  G +
Sbjct: 277 GAVAIVEGEHDFLALLSHKWEGPVLATNGQLSQEQLAWIKQNLQERKVITFFDSDAAGDK 336

Query: 330 AAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
                 +      +       +   +G+D D ++R  
Sbjct: 337 YR----ETFAGLGLASLIQVSLPEGQGKDIDDYLRHK 369


>gi|168187843|ref|ZP_02622478.1| CHC2 zinc finger domain protein [Clostridium botulinum C str.
           Eklund]
 gi|169294309|gb|EDS76442.1| CHC2 zinc finger domain protein [Clostridium botulinum C str.
           Eklund]
          Length = 731

 Score = 95.0 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 70/233 (30%), Gaps = 35/233 (15%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS-KGFYYCFS 66
           +++L        +I         K N +      CCPFH EKTPSF   +  K  + CF 
Sbjct: 3   LEELKR------VIETETGLKFDKNNKI------CCPFHKEKTPSFSIFEDGKPKFKCFG 50

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAI----AGVPLPVVDPKIEKKEKIQT----DLI 118
           C   GD + F        +IE+V+ L         + +P V+     + ++         
Sbjct: 51  CGENGDIIDFTRKYKNLDYIEAVRYLNNEGYSINSIDIPYVNIISYIQWQLNHLSDMKDF 110

Query: 119 RLIEVAT--------DFFHHSLKNARDKRLHYY------LDERGIDSHAIEMFKLGYAPD 164
           +L+E+           +     K    K+  YY      +  +                 
Sbjct: 111 KLMEIYNFKDYKGKFKYCKAKFKINDRKQCRYYSIINDKVQCKRNGEELPYNLYRLVKSK 170

Query: 165 SRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217
           S         +   +  K+    + +        + RF       +     + 
Sbjct: 171 SNKVYITEGEKDANTLCKMGYLAVSLKNFKYDKFHCRFFKNKNIIVIPDNDRP 223


>gi|160914388|ref|ZP_02076603.1| hypothetical protein EUBDOL_00392 [Eubacterium dolichum DSM 3991]
 gi|158433546|gb|EDP11835.1| hypothetical protein EUBDOL_00392 [Eubacterium dolichum DSM 3991]
          Length = 1122

 Score = 95.0 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFHD+K PS   +     ++CF C   GD + F + L   S  E+ ++LA   G+ 
Sbjct: 31  MACCPFHDDKNPSMKVD---QRFHCFGCGADGDVIDFTAKLFDLSPKEAAEKLAQDFGLI 87

Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129
                P   +  + +T+  +  E     + 
Sbjct: 88  YDSQAPPRRRYVRQKTEAQKFREDRQRCYR 117


>gi|168181372|ref|ZP_02616036.1| CHC2 zinc finger domain protein [Clostridium botulinum Bf]
 gi|182675377|gb|EDT87338.1| CHC2 zinc finger domain protein [Clostridium botulinum Bf]
          Length = 863

 Score = 95.0 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 31/158 (19%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC--NDS--KGFYYCFSC 67
           L  I + +LI              K  Y   CPFH EKTPS     N    K F+ CF C
Sbjct: 3   LQDIDLRDLIEN-----ETGEKFNKQGYI-KCPFHSEKTPSLRVKFNPDTNKDFFKCFGC 56

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK------------KEKIQT 115
              GD + F+      ++ E+ + L    G+ +   + ++++            K +   
Sbjct: 57  SECGDAIDFIIKYKNLNYTEAREYL----GIEVEKTEKELQEEKVKDYVDWELSKFRQNQ 112

Query: 116 DLIRLIEVATD-----FFHHSLKNARDKRLHYYLDERG 148
            L+ + +   +     +F     N   K+   Y    G
Sbjct: 113 KLLGIFKFVNERDEIVYFKAKFANGEGKKQLSYYHLEG 150


>gi|239624275|ref|ZP_04667306.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520661|gb|EEQ60527.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1123

 Score = 94.6 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 24/136 (17%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  + +   +   +    Y ++  R           ACCPFHD+K PS   N+   ++Y
Sbjct: 3   ENVFEAVKQSVSTRDAAAFYGIEVKRNG--------MACCPFHDDKNPSMKLNEE--YFY 52

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----------KIEKKEKI 113
           CF C   GD + F + L   S  E+ ++LA   G+      P          + ++  + 
Sbjct: 53  CFGCGATGDVIDFTAKLFDLSPKEAAEKLAQDFGLIYDSQAPPRRRYVRQKTEAQQFRED 112

Query: 114 QTDLIRLIEVATDFFH 129
           +    R++   +D++H
Sbjct: 113 RQRCYRVL---SDYYH 125


>gi|116751207|ref|YP_847894.1| DNA primase catalytic core [Syntrophobacter fumaroxidans MPOB]
 gi|116700271|gb|ABK19459.1| DNA primase catalytic core, N-terminal domain [Syntrophobacter
           fumaroxidans MPOB]
          Length = 1103

 Score = 94.2 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 139/445 (31%), Gaps = 35/445 (7%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH 68
            L+  + I ++  + +    R T          CP H  ++  S H    K  +YCF C 
Sbjct: 14  RLVTEMDIGDVARELLP--GRITQETGQRLMCDCPNHQSQSRLSLHVMLDKQGWYCFGCG 71

Query: 69  VKGDHLSFLSALL------GCSFI------ESVQRLAAIAGVPL-------PVVDPKIEK 109
           V GD L  +  +       G S        ++   LA  AG+P             + E 
Sbjct: 72  VGGDVLQLVEFIQTGSVTAGQSGPMPDSHRQARDYLAKKAGLPPLSRYGLSQERLAQTEA 131

Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169
               +  +   +      +H  LK +  + L +   +  +    I+   +GYA ++  ++
Sbjct: 132 DRAFELRVKDALTALARLYHARLKESP-EVLDWLKSKYALSEKTIDDLLIGYADNASGAV 190

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
            +    +    ++ + A       +       F  R++FP   SRG+V+   GR      
Sbjct: 191 AQLTGGEDGFSKRELAATGAFRPTSQDGLTPFFERRIVFPYW-SRGRVVFMIGRKTPWTP 249

Query: 230 SVKYLNS--PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
            V +      +  +  + +  Y      N L     +D        +I+ EG  D L+L 
Sbjct: 250 DVGWEQGKYKKLPVHDEHQRPYVADFINNAL--LFNEDCLLARPGKVIITEGVTDCLALM 307

Query: 288 QAGVQNVVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
           Q G+  V             RL+        V     ++        A+           
Sbjct: 308 QLGLPTVSPVTVRIRAADWERLIPKLRGVETVYICQDNELSQAGLKGALQTARTLAEHKI 367

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
               V L     P S  +   +    +    +  +      +    R          L  
Sbjct: 368 DTRLVTL-----PLSETQISARQELTERFGLTASVGPKELAKLLAGRPAEEIQAAEALLA 422

Query: 407 HLK-NCINHIKDQKLRYYYSQAIRD 430
             K +  ++I     R  + + + +
Sbjct: 423 TAKIDVNDYIAAGHTREDFERLLAE 447


>gi|225376796|ref|ZP_03754017.1| hypothetical protein ROSEINA2194_02438 [Roseburia inulinivorans DSM
           16841]
 gi|225211422|gb|EEG93776.1| hypothetical protein ROSEINA2194_02438 [Roseburia inulinivorans DSM
           16841]
 gi|291524352|emb|CBK89939.1| DNA primase (bacterial type) [Eubacterium rectale DSM 17629]
          Length = 1094

 Score = 94.2 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 12/126 (9%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  + +   +        Y +   R           ACCPFHD+K PS   +     ++
Sbjct: 3   ENVFEAIKQSVSTREAAEFYGIKVRRNG--------MACCPFHDDKNPSMKVD---QRFH 51

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD + F + L   S  E+ ++LA   G+      P   +  + + +  +  E 
Sbjct: 52  CFGCGEDGDVIDFTAKLFDLSPKEAAEKLAQDFGLIYDSQAPPRRRYVRQKNEAQKFRED 111

Query: 124 ATDFFH 129
               + 
Sbjct: 112 RQRCYR 117


>gi|254367580|ref|ZP_04983603.1| DNA primase [Francisella tularensis subsp. holarctica 257]
 gi|134253393|gb|EBA52487.1| DNA primase [Francisella tularensis subsp. holarctica 257]
          Length = 203

 Score = 94.2 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 108/197 (54%), Gaps = 7/197 (3%)

Query: 104 DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYA 162
             +  +KE++    I  +  A  ++  +L N+  K +   YL +RGIDS   + F +GY+
Sbjct: 5   SQEDIQKEQLYNKCISFLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYS 64

Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222
            +   ++ E  +     EE +++ GL I  D     YDRFR R++FPIR+ +G VIA+GG
Sbjct: 65  SEGWNNITELAKSINIPEEILVDTGLAIKNDKG-NLYDRFRGRVMFPIRNIQGNVIAYGG 123

Query: 223 RTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD 282
           R     + VKY+NSPET++F K   LY  +      +K    D+   S   +++VEGYMD
Sbjct: 124 RVTEDSDGVKYINSPETLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMD 178

Query: 283 VLSLCQAGVQNVVSSLG 299
           V+ L Q G    V++LG
Sbjct: 179 VVGLAQHGFYAAVATLG 195


>gi|266624133|ref|ZP_06117068.1| putative CHC2 zinc finger [Clostridium hathewayi DSM 13479]
 gi|288864039|gb|EFC96337.1| putative CHC2 zinc finger [Clostridium hathewayi DSM 13479]
          Length = 1122

 Score = 93.8 bits (231), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 18/129 (13%)

Query: 9   KDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           + +   + +     +Y ++  R           ACCPFHD+K PS   N+   ++YCF C
Sbjct: 7   ETVKQSVTVREAAERYGIEVKRGG--------MACCPFHDDKNPSMKLNEE--YFYCFGC 56

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVD--PKIEKKEKIQTDLIRL 120
              GD +   + L   S  E+ ++LA   G+       P  +   +  + +K + +    
Sbjct: 57  GATGDVIDLTARLYNLSPKEAAEKLAQDFGLIYDSQAPPRRNYVRQKTEAQKFRENRDHA 116

Query: 121 IEVATDFFH 129
             V  D+FH
Sbjct: 117 FRVLADYFH 125


>gi|291524647|emb|CBK90234.1| DNA primase (bacterial type) [Eubacterium rectale DSM 17629]
          Length = 212

 Score = 93.8 bits (231), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 7/117 (5%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
            ++   +    ++      +R      + +    CPFH +KT S     +   Y+CF C 
Sbjct: 5   DEVKERVTAREVM------ERAGIVFNRNN-MCRCPFHQDKTASMKVKPTDKKYFCFGCG 57

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
            KGD + F++     S  E+  ++A   G+          K  + +   ++++E   
Sbjct: 58  EKGDAIDFVAKYYNRSPREAAMQIADEFGIIYDSSVRSPPKPVRREKSPMQILEETK 114


>gi|167947492|ref|ZP_02534566.1| DNA primase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 152

 Score = 93.8 bits (231), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 63/146 (43%), Positives = 87/146 (59%), Gaps = 10/146 (6%)

Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
            KYLNSPET LFHKG+ LY  F A   L+K             +++VEGYMDV++L Q G
Sbjct: 16  PKYLNSPETPLFHKGRELYGLFEASQALRKI----------DSLLVVEGYMDVVALAQFG 65

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           ++NVV++LGTA T+  L L++++ P ++ CFDGD  G  AA+KA+   L  +  G  V F
Sbjct: 66  IRNVVATLGTATTKEHLELIFRICPEVIFCFDGDRAGRDAAWKALQTSLPVMREGREVRF 125

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIV 376
           + L  GEDPD+ +R  G   F     
Sbjct: 126 LFLPDGEDPDTLVRKEGVEQFSDRAK 151


>gi|291530977|emb|CBK96562.1| DNA primase (bacterial type) [Eubacterium siraeum 70/3]
 gi|295104168|emb|CBL01712.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii SL3/3]
 gi|295115230|emb|CBL36077.1| DNA primase (bacterial type) [butyrate-producing bacterium SM4/1]
          Length = 1123

 Score = 93.8 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 11/126 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  + +   +   +    Y ++  R           ACCPFHD+K PS   N+   ++Y
Sbjct: 3   ENVFEAVKQSVSTRDAAAFYGIEVKRNG--------MACCPFHDDKNPSMKLNEE--YFY 52

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD + F + L   S  E+ ++LA   G+      P   +  + +T+  +  E 
Sbjct: 53  CFGCGATGDVIDFTAKLFDLSPKEAAEKLAQDFGLIYDSQAPPRRRYVRQKTEAQQFRED 112

Query: 124 ATDFFH 129
               + 
Sbjct: 113 RQRCYR 118


>gi|160939440|ref|ZP_02086790.1| hypothetical protein CLOBOL_04333 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437650|gb|EDP15412.1| hypothetical protein CLOBOL_04333 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1133

 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  + +   +        Y ++  R           ACCPFHD+K PS   +     ++
Sbjct: 3   ENVFEAVKQSVSTREAAAFYGIEVKRNG--------MACCPFHDDKNPSMKVD---QRFH 51

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD + F + L   S  E+ ++LA   G+      P   +  + +T+  +  E 
Sbjct: 52  CFGCGADGDVIDFTARLFDLSPKEAAEKLAQDFGLIYDSQAPPRRRYVRQKTEAQKFRED 111

Query: 124 ATDFFH 129
               + 
Sbjct: 112 RRRCYR 117


>gi|325263021|ref|ZP_08129756.1| putative CHC2 zinc finger [Clostridium sp. D5]
 gi|324031414|gb|EGB92694.1| putative CHC2 zinc finger [Clostridium sp. D5]
          Length = 1094

 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 18/129 (13%)

Query: 9   KDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           + +   + +     +Y ++  R           ACCPFHD+K PS   N+   ++YCF C
Sbjct: 7   ETVKQSVTVREAAERYGIEVKRGG--------MACCPFHDDKNPSMKLNEE--YFYCFGC 56

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVD--PKIEKKEKIQTDLIRL 120
              GD +   + L   S  E+ ++LA   G+       P  +   +  + +K + +    
Sbjct: 57  GATGDVIDLTARLYNLSPKEAAEKLAQDFGLIYDSQAPPRRNYVRQKTEAQKFRENRDHA 116

Query: 121 IEVATDFFH 129
             V  D+FH
Sbjct: 117 FRVLADYFH 125


>gi|261884440|ref|ZP_06008479.1| DNA primase [Campylobacter fetus subsp. venerealis str. Azul-94]
          Length = 143

 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/143 (36%), Positives = 85/143 (59%), Gaps = 1/143 (0%)

Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           + ++A +F+HH L N    +    YL +RG     IE + +G++  +  SL   L++ G+
Sbjct: 1   MHKIAANFYHHLLLNTVEGENALSYLKKRGFSRELIEKYGIGWSLPNWDSLSLLLKRNGY 60

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
             E+  ++GL+I  ++   ++DRFR R++FP+    G+VI F GR +   +  KYLNSPE
Sbjct: 61  GMEEAEKSGLVILREDGEGAFDRFRGRVMFPLHDDHGKVIGFSGRIIDAQDEPKYLNSPE 120

Query: 239 TILFHKGKNLYNFFGALNYLQKS 261
           T +F+KGK LYN   A   ++KS
Sbjct: 121 TPIFNKGKLLYNLHRARVQIRKS 143


>gi|317498262|ref|ZP_07956561.1| CHC2 zinc finger protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894471|gb|EFV16654.1| CHC2 zinc finger protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 909

 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 107/362 (29%), Gaps = 82/362 (22%)

Query: 13  IHIPISNLIGQYVDWDR--RKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
             + I NLI    ++ R  +K +        CCPFH++++ SF  N   G ++CF+  + 
Sbjct: 3   AEVNIDNLIDYKTEYSRVIKKAHITGDQMTGCCPFHEDRSSSFSVNLKTGMWHCFTEDIG 62

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
           G++L F + + G    E+ +++    G        + +++++ +     + + A   F  
Sbjct: 63  GNYLDFYARMNGIDTKEAYKQILEQNG-----YSEEDQQEQERRAKCYSVAQYA---FEK 114

Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190
            L     K       ER   +    M       D R                        
Sbjct: 115 RLPEDWLKTDCRITTERDRKTKITYMKIPYMNEDGRELTFRKRYAHKD------------ 162

Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250
                            F  +   G+ +   G                         L+ 
Sbjct: 163 -----------------FRWKYGAGKTMCLYG-------------------------LWK 180

Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310
                                 +++LVEG  D  S+    +  +     T   +  ++ L
Sbjct: 181 LHQIKQS--------------GYVVLVEGESDSQSMWMMSISCLGVPGATMFRQDWVKHL 226

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL--LSRGEDPDSFIRCYGK 368
                ++ +  + D  G     K I  +      G+   F    +   +DP      +GK
Sbjct: 227 --QDLKVYIHQEQDHGGEVMIKKVITTLKDAGFMGDVYKFTCGNIPECKDPSDVYVKFGK 284

Query: 369 TA 370
             
Sbjct: 285 DD 286


>gi|266621533|ref|ZP_06114468.1| DNA primase [Clostridium hathewayi DSM 13479]
 gi|288866796|gb|EFC99094.1| DNA primase [Clostridium hathewayi DSM 13479]
          Length = 121

 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 21/128 (16%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  + +   I I     +Y ++  R            CCPFHD+K PS   N  K ++Y
Sbjct: 2   DNLFETVKQSITIREAAERYGIEVKRGG--------MVCCPFHDDKNPSMKLN--KEYFY 51

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVD-----PKIEKKEKI 113
           CF C   GD +   S L   S  E+ ++LA   G+       P  +      + ++  + 
Sbjct: 52  CFGCGATGDVIDLASRLYNLSPKEAAEKLAQDFGLIYDSQAPPRRNYVRQKTETQQFRED 111

Query: 114 QTDLIRLI 121
           +    R++
Sbjct: 112 RQRCYRIL 119


>gi|149927882|ref|ZP_01916132.1| DNA primase [Limnobacter sp. MED105]
 gi|149823321|gb|EDM82554.1| DNA primase [Limnobacter sp. MED105]
          Length = 356

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 137/368 (37%), Gaps = 29/368 (7%)

Query: 281 MDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340
           MDV++L Q G +N V++LGTA+T   +  L+K + R+V  FDGD  G +AA++A+   L 
Sbjct: 1   MDVVALAQWGFENAVATLGTAVTPDHVLKLFKQTDRLVFAFDGDGAGQKAAWRALQACLP 60

Query: 341 HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE 400
           H+    R +F+ L    DPDSFIR  G   FE ++ ++  L + L +    N      + 
Sbjct: 61  HVSENKRADFIFLPAEHDPDSFIRTEGPDGFEAMVAQAASLSEFLARYLERNYPLQQIEG 120

Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
            A     LK  I  ++    R    +A+ + L     +         R    +      K
Sbjct: 121 SAAAISFLKPLIVQMQPTVYRSSLLRALANLLGATPMELSRHLGLKSRESGGDYFSPKNK 180

Query: 461 GPSQRLMQSSLVKGKLSKKPSLRE-------------AALLLTLINHPAILQEQYQELAD 507
           G   +  +    K          +              +L   +I  P  +Q     L  
Sbjct: 181 GQQGQFPEKKFGKRFGKFNDEPLQNNWGPRPTAKSPLLSLAARVIRAPQHVQLCNSLLEL 240

Query: 508 IRYDNNELQKLWS--FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
              + N   ++ S   L          L   +     +      +  + ++ R       
Sbjct: 241 YEREQNPAAEVHSFVHLLEKVRNDPNLLEARLQHAFNDEVHQNWVNSVLKEARGLDDSLD 300

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-TAILISILHEV 624
                  ++R G  Q   L+ +         E+E+  A++  +GE  +     +    E+
Sbjct: 301 FE----TELRSGVYQCSELWFK--------AELERLTAEMPTQGEQLRWYHECMQRFQEL 348

Query: 625 H-IQIHQI 631
              +++Q+
Sbjct: 349 KQKRVNQL 356


>gi|309776202|ref|ZP_07671193.1| putative CHC2 zinc finger [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916153|gb|EFP61902.1| putative CHC2 zinc finger [Erysipelotrichaceae bacterium 3_1_53]
          Length = 1095

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 11/126 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  + +   +   +    Y ++  R           ACCPFHD+K PS   N+   ++Y
Sbjct: 3   ENVFEAVKQSVSTRDAAAFYGIEVKRNG--------MACCPFHDDKNPSMKLNEE--YFY 52

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD + F + L   S  E+ ++LA   G+      P   +  + +T+  +  E 
Sbjct: 53  CFGCGATGDVIDFTAKLFDLSPKEAAEKLAQDFGLIYDSQAPPRRRYVRQKTEAQKFRED 112

Query: 124 ATDFFH 129
               + 
Sbjct: 113 RQRCYR 118


>gi|254229774|ref|ZP_04923182.1| hypothetical protein VEx25_0260 [Vibrio sp. Ex25]
 gi|151937741|gb|EDN56591.1| hypothetical protein VEx25_0260 [Vibrio sp. Ex25]
          Length = 257

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 99/284 (34%), Gaps = 32/284 (11%)

Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
             G ++ F+ L  GEDPDS+IR  GK AFE+ +  ++PL + ++   T+    +T +  A
Sbjct: 6   TDGRQLKFMFLPDGEDPDSYIRQNGKQAFEQQVSNAMPLSEFMFSLLTQQVDMSTKEGMA 65

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
           +L       I+ +    LR Y  + +  RL  + ++ + +         K  +   +   
Sbjct: 66  KLSTLAVPLIDKVPGGTLRLYLRELLGRRLGLVDERQLQQLISKQGKEDKRPQPHKEIKR 125

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           +                       ++  LI +P  +       +        L  L+  +
Sbjct: 126 TPM-------------------REVIALLIQNPQYVSMVPDLTSVRDLPIPGL-SLFVDV 165

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                   +    ++ +         LL +L              E  +  + +   Q +
Sbjct: 166 LDKCQAHPHINTGQLLEHWRNSQNETLLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV 224

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
                     +Q E ++ +   V     AE+   L++++ ++  
Sbjct: 225 ---------EKQIENLQAKARSVGLS--AEEKRELLALMLDLKA 257


>gi|317153304|ref|YP_004121352.1| DNA primase catalytic core domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943555|gb|ADU62606.1| DNA primase catalytic core domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 1104

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 71/447 (15%), Positives = 134/447 (29%), Gaps = 37/447 (8%)

Query: 16  PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHL 74
            I ++  + +    R T          CP H  ++  S H    K  +YCF C V GD L
Sbjct: 20  DIGDVARELLP--GRITQETGQRLMCDCPNHQSQSRLSLHVMLDKQGWYCFGCGVGGDVL 77

Query: 75  SFLSALL------GCSFI------ESVQRLAAIAGVPL-------PVVDPKIEKKEKIQT 115
             +  +       G S        ++   LA  AG+P             + E     + 
Sbjct: 78  QLVEFIQTGSVTAGQSGPMPDSHRQARDYLAKKAGLPPLSRYGLSQERLAQTEADRAFEL 137

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            +   +      +H  LK +  + L +   +  +    I+   +GYA ++  ++ +    
Sbjct: 138 RVKDALTSLARLYHARLKESP-EVLDWLKSKYALSEETIDDLLIGYADNASGAVAQLTGG 196

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
           +    ++ + A       +       F  R++FP   SRG+V+   GR       V +  
Sbjct: 197 EDGFSKRELAATGAFRPTSQDGLTPFFERRIVFPYW-SRGRVVFMIGRKTPWTPDVGWEQ 255

Query: 236 S--PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
               +  +  + +  Y      N L     +D        +I+ EG  D L+L Q G+  
Sbjct: 256 GKYKKLPVHDEHQRPYVADFINNAL--LFNEDCLLARPGKVIITEGVTDCLALMQLGLPT 313

Query: 294 VVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           V             RL+        V     ++        A+               V 
Sbjct: 314 VSPVTVRIRAADWERLIPKLRGVETVYICQDNELSQAGLKGALQTAHTLAEHKIDTRLVT 373

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           L     P S  +   +    +    +  +      +          +E    E  L    
Sbjct: 374 L-----PLSETQLSARQELTERFGLTASVGPKELAKLLAG---RPAEEIQAAEALLAIAK 425

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKY 439
             + D     +  +     L +     
Sbjct: 426 IDVNDYIAAGHTLEDFERLLAEASTPI 452


>gi|154498728|ref|ZP_02037106.1| hypothetical protein BACCAP_02719 [Bacteroides capillosus ATCC
           29799]
 gi|150272268|gb|EDM99466.1| hypothetical protein BACCAP_02719 [Bacteroides capillosus ATCC
           29799]
          Length = 980

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFHD+K PS   N+   ++YCF C   GD + F + L   S  E+ ++LA   G+ 
Sbjct: 31  MACCPFHDDKNPSMKLNEE--YFYCFGCGATGDVIDFTARLYNLSPKEAAEKLAQDFGLA 88

Query: 100 LPVVDPKIEKKEKIQTDLIRLIEV-------ATDFFH 129
                P   +  + +++  +  E          D+FH
Sbjct: 89  YDSQAPPRRRYVRQKSEAQKFKEDRDHTFRVLADYFH 125


>gi|170761722|ref|YP_001787280.1| DNA primase related protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408711|gb|ACA57122.1| DNA primase related protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 863

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 25/127 (19%)

Query: 43  CPFHDEKTPSFHC--NDS--KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
           CPFH EKTPS     N    K F+ CF C   GD + F+      ++ E+ + L    G+
Sbjct: 28  CPFHSEKTPSLRVKFNPDTNKDFFKCFGCSECGDAIDFIIKYKNLNYTEAREYL----GI 83

Query: 99  PLPVVDPKIEK------------KEKIQTDLIRLIEVATD-----FFHHSLKNARDKRLH 141
            +   + ++++            K +    L+ + +   +     +F     N   K+  
Sbjct: 84  EVEKTEKELQEEKVKDYVDWELSKFRQGQKLLGIFKFVNERDEIVYFKAKFANGEGKKQL 143

Query: 142 YYLDERG 148
            Y    G
Sbjct: 144 SYYHLEG 150


>gi|295090446|emb|CBK76553.1| DNA primase (bacterial type) [Clostridium cf. saccharolyticum K10]
          Length = 111

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102
           CPFH+++TPS   +     ++CF C   GD + F+S + G S +E+ Q++A+  G+   V
Sbjct: 32  CPFHNDRTPSMKVD---NRFHCFGCGADGDVIDFVSRIFGISSLEAAQKIASDFGISYDV 88

Query: 103 VDPKIEKKE 111
                + K+
Sbjct: 89  KSAVTKPKK 97


>gi|160894307|ref|ZP_02075084.1| hypothetical protein CLOL250_01860 [Clostridium sp. L2-50]
 gi|225375482|ref|ZP_03752703.1| hypothetical protein ROSEINA2194_01107 [Roseburia inulinivorans DSM
           16841]
 gi|257414265|ref|ZP_04745803.2| DNA primase [Roseburia intestinalis L1-82]
 gi|156864008|gb|EDO57439.1| hypothetical protein CLOL250_01860 [Clostridium sp. L2-50]
 gi|225212679|gb|EEG95033.1| hypothetical protein ROSEINA2194_01107 [Roseburia inulinivorans DSM
           16841]
 gi|257200633|gb|EEU98917.1| DNA primase [Roseburia intestinalis L1-82]
 gi|295091786|emb|CBK77893.1| DNA primase (bacterial type) [Clostridium cf. saccharolyticum K10]
          Length = 225

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 29  RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88
           R   N         CPFH +K PS   +     ++CF C   GD + F+S L   S  E+
Sbjct: 35  RVGRNG-----MCVCPFHADKNPSMKVDR---RFHCFGCQADGDVIDFVSRLEAVSPKEA 86

Query: 89  VQRLAAIAGVPLPVVDPKIEKKEKIQTD 116
              LA    +P    +P   +K K + +
Sbjct: 87  ALMLAQEFSIPYEDREPPGRRKPKPRQE 114


>gi|291548617|emb|CBL24879.1| DNA primase (bacterial type) [Ruminococcus torques L2-14]
          Length = 989

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFHD+K PS   +     ++CF C   GD + F + L   S  E+ ++LA   G+ 
Sbjct: 31  MACCPFHDDKNPSMKVD---QRFHCFGCGEDGDVIDFTAKLFDLSSKEAAEKLAQDFGLI 87

Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129
                P   +  + +T+  +  E     + 
Sbjct: 88  YDSQAPPRRRYVRQKTEAQKFREDRQSCYR 117


>gi|317501824|ref|ZP_07960009.1| LOW QUALITY PROTEIN: DNA primase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896714|gb|EFV18800.1| LOW QUALITY PROTEIN: DNA primase [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 207

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 29  RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88
           R   N +      CCPFH+++TPS   +     +YCF C   GD + F + L G    E+
Sbjct: 23  RVGRNGMV-----CCPFHNDRTPSMKVDS---RFYCFGCGASGDVIDFAALLHGLGKREA 74

Query: 89  VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
             RLA   GV             K         + A   F  
Sbjct: 75  AVRLAEDFGVS-YEKSGNAPPDRKRHNRSQPRQKSAEQRFQE 115


>gi|78355954|ref|YP_387403.1| Zn-finger, CHC2 type [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218359|gb|ABB37708.1| Zn-finger, CHC2 type [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 1098

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 116/344 (33%), Gaps = 32/344 (9%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH 68
            L+  + I ++         R T   +      CP H  ++  S H    K  +YCF C 
Sbjct: 12  RLITELDIGDVARD--LLAGRITQESRQRLQCDCPHHQSQSRRSLHVMLDKQGWYCFGCG 69

Query: 69  VKGDH---LSFLSA---LLGCSFI------ESVQRLAAIAGVPL-------PVVDPKIEK 109
           V GD    + F+ +     G S        ++   LA  AG+P             + E 
Sbjct: 70  VGGDVLQLVEFVQSGTVTAGQSGPMPDSHRQARDFLAGKAGMPPLSRYGLTQERLEQTEN 129

Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169
               +  +   +     ++H  LK  + + L +  ++  I    I+   +G+A +    +
Sbjct: 130 DRSFEIRVKDALTELARYYHQRLKENQ-EALTWLKEKYAISDETIDDLLIGFADNESGVI 188

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
                 +    ++ + A       +       F  R+IFP   SRG+V+   GR      
Sbjct: 189 AALRSGEHGFSKRELSATGAFRPTSQDGLNPFFEKRIIFPYW-SRGRVVFMIGRKTPWTP 247

Query: 230 SVKYLNS--PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
            V +      +  +  + +  Y      N +     +D        II+ EG  D ++L 
Sbjct: 248 DVNWEQGKYKKLPVHDEHQRPYVARFINNAV--LFNEDCLLGKPDHIIITEGVTDCIALM 305

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSP---RIVLCFDGDDPGL 328
           Q G    +S +   +       L         + +C D +    
Sbjct: 306 QQGFP-ALSPVTVRIRAADWERLVPKMRGLKTVYICQDNEISEA 348


>gi|295101706|emb|CBK99251.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii L2-6]
          Length = 206

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 11/106 (10%)

Query: 10  DLLIHIPISNLIGQYVDWD-RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
            + + + +     +Y   + +R +         CCPFH+++TPS   N+   ++YCF C 
Sbjct: 6   QVKMAVSVKE-AAEYYGLEVKRGS-------MVCCPFHNDRTPSMKLNED--YFYCFGCG 55

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114
             GD +  ++ L   S  ++ ++LA   G+           ++   
Sbjct: 56  ATGDVIDLVAKLFNLSSYDAAKKLADDFGIDPDKPPAAAALRKTKY 101


>gi|266625761|ref|ZP_06118696.1| DNA primase [Clostridium hathewayi DSM 13479]
 gi|288862337|gb|EFC94635.1| DNA primase [Clostridium hathewayi DSM 13479]
          Length = 258

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            +  + +   +        Y ++  R           ACCPFHD+K PS   +     ++
Sbjct: 3   ENVFEAVKQSVSTREAAEFYGIEVKRNG--------MACCPFHDDKNPSMKVD---QRFH 51

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           CF C   GD + F + L   S  E+ ++LA   G+      P   K  + +T+  +  E 
Sbjct: 52  CFGCGADGDVIDFTAKLFDLSSKEAAEKLAQDFGLIYDSQAPPRRKYVRQKTEAQKFRED 111

Query: 124 ATDFFH 129
               + 
Sbjct: 112 RQRCYR 117


>gi|119716477|ref|YP_923442.1| DNA primase catalytic core [Nocardioides sp. JS614]
 gi|119537138|gb|ABL81755.1| DNA primase catalytic core, N-terminal domain [Nocardioides sp.
            JS614]
          Length = 1976

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 91/398 (22%), Positives = 155/398 (38%), Gaps = 39/398 (9%)

Query: 114  QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
            +  ++ + ++A  FF     ++  +         GID    E F+ G AP    +L +HL
Sbjct: 1519 RERMLEINDMAQAFFEARFTDSWGRDYL--TGRFGIDLAGDERFRPGQAPAGWTNLVDHL 1576

Query: 174  RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-----KG 228
            R +G S+ +++  G+ I+  ++    DRFR+R++FP+   +G+V+ F GR          
Sbjct: 1577 RGRGVSDAEMVATGVAIEA-STGRLIDRFRDRVMFPVIH-QGEVLGFVGRRRPDLTDADK 1634

Query: 229  ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS--L 286
               KYLN+ +T LFHKG  L+               D      +  ++VEG +D ++  L
Sbjct: 1635 GGPKYLNTADTPLFHKGAQLFG------------VVDELLAEGAVPVIVEGPIDAVAVTL 1682

Query: 287  CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
              AG+   V+ LGT+LT+ Q   L  +    ++  D D  G  AA +   ++  H   G 
Sbjct: 1683 ASAGLYLGVAPLGTSLTDEQAAQLAAVGRDPIVATDADLAGQVAAERDFWMLTPH---GL 1739

Query: 347  RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRETENRSFNTPDERA 402
               F     G DP   +   G  A    +    P      D L     +N +       A
Sbjct: 1740 DPGFARFPDGLDPADLLAQRGPAALTAALASGQPAFRSLGDQLLTERLDNLAPEQAQMAA 1799

Query: 403  ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
               I  +                  +R RLQ    +   +     + W  + R       
Sbjct: 1800 MRVISARPSRAWEPGA-------NQVRARLQLSQLQARRDLRDAIKTWDADPRKAALAEL 1852

Query: 463  SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
             +     + +     K P+ R A L   L   P +L++
Sbjct: 1853 HKSSEVRARLSAAAEKTPAERWAPLAREL--DPRLLEQ 1888


>gi|293115670|ref|ZP_06604562.1| DNA primase [Butyrivibrio crossotus DSM 2876]
 gi|292808731|gb|EFF67936.1| DNA primase [Butyrivibrio crossotus DSM 2876]
          Length = 214

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 10/130 (7%)

Query: 29  RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88
           R   N         CPFHD+K PS   +     ++CF C   GD + F+S L   S  E+
Sbjct: 23  RVGRNG-----MCVCPFHDDKNPSMKVDR---RFHCFGCQADGDVIDFVSRLENVSPKEA 74

Query: 89  VQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDE 146
              LA    +P    +P  +  +    Q    +  +    +    L +  +    +  D 
Sbjct: 75  ALMLAQDFSIPYEDKEPPGRSRRPHPRQETPEQQFKRMERYCFRVLSDYHNLLRRWKRDY 134

Query: 147 RGIDSHAIEM 156
                     
Sbjct: 135 APKTPDEEWH 144


>gi|160894277|ref|ZP_02075054.1| hypothetical protein CLOL250_01830 [Clostridium sp. L2-50]
 gi|156863978|gb|EDO57409.1| hypothetical protein CLOL250_01830 [Clostridium sp. L2-50]
          Length = 211

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 12/156 (7%)

Query: 11  LLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69
           +  ++    +  QY +  +R           ACCPFH +KTPS   +     YYCF C  
Sbjct: 7   VKENVTARQVAMQYGIKINRSG--------LACCPFHKDKTPSMKIDK---RYYCFGCGD 55

Query: 70  KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129
            GD + F++   G +  E+  ++A+  G+     +    KK   +    ++++       
Sbjct: 56  TGDAIDFVAKYFGLAPKEAAMKIASDFGLNYDATNRAPPKKMAPKKTPEQILDEEQKQCF 115

Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
             L +       +  +                A  +
Sbjct: 116 CVLSDYYHLLRKWKTEYALKSMDEEWHPCFVEALQN 151


>gi|153815824|ref|ZP_01968492.1| hypothetical protein RUMTOR_02069 [Ruminococcus torques ATCC 27756]
 gi|145846849|gb|EDK23767.1| hypothetical protein RUMTOR_02069 [Ruminococcus torques ATCC 27756]
          Length = 161

 Score = 91.9 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 21/160 (13%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           +++     + +++G+Y           +  +  CCPFH EKT S         YYCF C 
Sbjct: 4   EEIKKTYSMRDILGRY------GMQPNRAGFI-CCPFHKEKTASMKIYQDS--YYCFGCG 54

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIA---------GVPLPVVDPKIEKKEKIQTDLIR 119
             GD   F+S +   +F E+   L              +       + E +++ + +L  
Sbjct: 55  AHGDIFDFVSQMEDITFREAFFNLGGTYEQKKETFGERMSRYHARKEWEMQQRQKENLEE 114

Query: 120 ---LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEM 156
              +     D +   L         +      +       
Sbjct: 115 RRKVNSELIDIYRDCLILTVPLSDLWTESYNKLQYQLYLH 154


>gi|257439527|ref|ZP_05615282.1| DNA primase [Faecalibacterium prausnitzii A2-165]
 gi|257198054|gb|EEU96338.1| DNA primase [Faecalibacterium prausnitzii A2-165]
          Length = 214

 Score = 91.9 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 10/130 (7%)

Query: 29  RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88
           R   N         CPFH++K PS   +     ++CF C   GD + F+S L   S  E+
Sbjct: 23  RVGRNG-----MCACPFHNDKNPSMKVDR---RFHCFGCQADGDVIDFVSRLENISPREA 74

Query: 89  VQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDE 146
              LA    +P    +P  +  + +  Q    +            L +  +    + LD 
Sbjct: 75  ALMLAQDFSIPYEDKEPPSRSRRPQPRQESPEQQFRRMERHCFRVLSDYHNLLHRWKLDY 134

Query: 147 RGIDSHAIEM 156
                     
Sbjct: 135 APKTPDEEWH 144


>gi|158079345|ref|YP_001504158.1| putative primase [Enterococcus phage phiEF24C]
 gi|157890189|dbj|BAF81317.1| putative primase [Enterococcus phage phiEF24C]
          Length = 352

 Score = 91.9 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 120/379 (31%), Gaps = 83/379 (21%)

Query: 33  NAVKGDYWACCPFHD-EKTPSFHC-----NDSKGFYYCFSCHVKGDHLSFLSALLGCSFI 86
                DY   CPF D +    F+      +     ++CF C   G+ +SF+      SF 
Sbjct: 14  KYAVRDYRYNCPFCDYDTKYKFYVRVEEGHPKNNLWHCFKCGSSGNPVSFVMKYYNVSFK 73

Query: 87  ESVQRLAAIAGVP------LPVVD-----------------PKIEKKEKIQTDLIRLIEV 123
           E+++ L    G        +P  D                 PK E K+  +  +   +  
Sbjct: 74  EALEIL-EEYGYRFNNKNYVPKSDKLTDEEYLLLLLGSLGKPKEETKQAKKELVAPPLPD 132

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
                  +L+         Y ++RG   + I M  +GY  DS                  
Sbjct: 133 GFKLLSQNLREPEAYPFLLYCNKRGFTLNDIYMHNIGYVKDSW----------------- 175

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
                            R ++ L+F      G+   +  R +     +K LN+P     H
Sbjct: 176 --------VPLENGKSVRLKDHLVFLTHGKDGKYQYWNTRAI-GESFIKSLNAPSKEGEH 226

Query: 244 KGK-NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
             K  ++N   A              + +  I++ EG  D L++ ++     V + G  +
Sbjct: 227 SKKDTIFNINRA--------------SQTPQIVITEGVPDALTVGES----GVGTFGKQV 268

Query: 303 TEYQLRLLW---KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T+ Q+ L+        +I +  D D        +   L        N    V+    +D 
Sbjct: 269 TDEQVELILDSVNEEQKIFIYLDKDAK-----KEIKKLAEKLYKRHNETYVVISPTTQDA 323

Query: 360 DSFIRCYGKTAFEKLIVES 378
           +S  R           V++
Sbjct: 324 NSLGREEAWNIINNYSVKA 342


>gi|218779953|ref|YP_002431271.1| DNA primase catalytic core domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761337|gb|ACL03803.1| DNA primase catalytic core domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 921

 Score = 91.9 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 73/401 (18%), Positives = 131/401 (32%), Gaps = 62/401 (15%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVD-----WDRR---KTNAVKGDYWACCPFHDEKTPSFHC 55
                  L   IP+ +    Y+        +      N     +      H++       
Sbjct: 2   DNSLFDRLKQAIPLED----YLTAENQCLIKPVGDGINRANPCFACG---HND---CLTL 51

Query: 56  NDSKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAAIAGVP-----LPVVDPKIEK 109
                 ++CFSC + GD ++    + G  S  E+ +RLA    +       P    K E 
Sbjct: 52  YSD-NTFHCFSCTITGDVINAEQIIHGHESPGEAARRLAEKYNIDAKTSKPPSRPSKAEN 110

Query: 110 KEK------IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAP 163
           K+        Q     +  +A +F+H  L N    +  Y   +R   +  ++  ++GYA 
Sbjct: 111 KKDSTIPKLEQARAFEIRRMAAEFYHAQLLNDPKAQE-YLTSKRKHSAEILKGCQVGYAS 169

Query: 164 DSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR 223
            +   L +H +  G++ E +   GL+   DN           +        G+V     R
Sbjct: 170 GN---LIKHAKSLGYTVEDLKGVGLVKPKDNGVRLVIPQGAYVFP--HFGNGEV-----R 219

Query: 224 TLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV 283
             +  +    LN             Y                    S   +++VEG  D 
Sbjct: 220 FFTFKDPTGNLN-------------YQLNKEFKDPGYVCLGQDCLTSKGPVVIVEGENDY 266

Query: 284 LSLCQA-GVQNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLC 340
           LS+        V+++ G A T    + + +        L FD D  G +   +       
Sbjct: 267 LSVVDKGKWPRVIATNGNANTTAPSKHIKENCQGWTFYLAFDNDQAGDKYTRRFA--AAI 324

Query: 341 HLIPGNRVNFVLLSRGEDPDSFIR--CYGKTAFEKLIVESL 379
           H   G      + S  +D D ++R     + AF+ LI  + 
Sbjct: 325 HAANGQAFKLEIPSPHKDIDEYLRSSENPEDAFQCLIDSAK 365


>gi|49234752|ref|YP_025461.1| putative DNA primase [Beet leafhopper transmitted virescence
           phytoplasma]
 gi|40288356|gb|AAR84211.1| putative DNA primase [Beet leafhopper transmitted virescence
           phytoplasma]
          Length = 382

 Score = 91.9 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 130/376 (34%), Gaps = 54/376 (14%)

Query: 35  VKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLA 93
               Y   C FH+  +  S   N  K   YC++C    D +         SF E+V+ L 
Sbjct: 25  AGISYRFPCLFHESTSGLSASVN-KKNRVYCWACEKPFDTIDIYQKKCSVSFYEAVKELG 83

Query: 94  AIAGV-------------PLPVVDPK---------------IEKKEKIQTDLIRLIEVAT 125
                              +     +               I++K+ I      L+   T
Sbjct: 84  LFYNNDEYLEMKNQPINPQIETRTKQLLKNSQPIITDNQEIIKQKQNILQKYSPLLNQIT 143

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
           +F+H  L N +    +     +      I+ FKLGY+  +   L +   +      ++  
Sbjct: 144 NFYHQQLLNNQGMLNYLLEIRKLN-LDIIKKFKLGYSDANNNKLLKVFSKDKDLLLELDL 202

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR----TLSKGESVKYLNSPETIL 241
                  +     YD   N L+ P+      +  +       T    +     N   T +
Sbjct: 203 IRFNNKYNFH---YDTLENCLVIPVLHENQTMHFYKNNFGVVTTFNPKYKALKNFSNTPI 259

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F+     + F  A   ++K+ +          +I+ EG+ DV++  Q  ++N +  +   
Sbjct: 260 FYYP---FGFSFAKEEIKKARK----------VIIHEGFYDVINTHQHNIKNTIGLITIK 306

Query: 302 LT--EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
                  +  L K + ++++  D DD GL  + + + + L      N +  + L   +D 
Sbjct: 307 SYLSNPIITFLTKNNIKVIIGLDNDDAGLNNSQR-LKMQLDSENIENEIKTIQLKDCKDA 365

Query: 360 DSFIRCYGKTAFEKLI 375
           D  ++ Y    ++++ 
Sbjct: 366 DDILKKYNVELYKQIY 381


>gi|119952351|ref|YP_949952.1| DNA primase [Arthrobacter aurescens TC1]
 gi|119951481|gb|ABM10391.1| DNA primase [Arthrobacter aurescens TC1]
          Length = 363

 Score = 91.9 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 81/333 (24%), Positives = 129/333 (38%), Gaps = 29/333 (8%)

Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGI-DSHAIEMFKLGYAPDSRYS 168
           +   +  LI   E A +F+   L          YL +RG         + +G+AP +   
Sbjct: 3   RAPSRDQLIAANEDAAEFYRRHLLGPDGAGPRRYLTQRGFATLLNDTPWTVGHAPATWTP 62

Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
           L +HL + G+S+E  + AGL           DRFR+R+ F IR  + Q++ F  RT   G
Sbjct: 63  LHDHLSELGYSDEAQLGAGLTSISRRGH-MIDRFRDRITFGIRDQQDQLVGFTARTGPVG 121

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
              KYLN+P T LF K   L+    A             R+ +   +LVEG +D +++  
Sbjct: 122 RDPKYLNTPRTDLFDKSAELFGLGEA------------TRSPAQTCVLVEGPLDAIAVTI 169

Query: 289 AGVQN-VVSSLGTALTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
           A       +  GTALT+   RLL      +++L FDGD  G R    A  ++        
Sbjct: 170 AEPATAAQALCGTALTDKHARLLRSASHEQLILAFDGDPAGARGLDNAASVMCDDRA--- 226

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP--DERAEL 404
                +    +DP  F+   G  A    +  + P  ++L +             +     
Sbjct: 227 ---VAVRRPQQDPAGFLANEGPLALSAALSSARPAAEVLLEAHLAKWPDRLDSAEAAIGC 283

Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
                  I  I+   +      A+  RL    +
Sbjct: 284 LREAATMIARIRPADVA-----ALATRLSHETR 311


>gi|60681803|ref|YP_211947.1| putative DNA primase [Bacteroides fragilis NCTC 9343]
 gi|60493237|emb|CAH08019.1| putative DNA primase [Bacteroides fragilis NCTC 9343]
          Length = 1017

 Score = 91.5 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 14/104 (13%)

Query: 1  MNYPRDFIKDLLIHIP--ISNLIGQYVDWDRRKTNAVKGDYWACCPFHD--EKTPSFHCN 56
          M +  D I+ +       + ++   + +  R   N     Y   CP     +K      +
Sbjct: 1  MYFNDDEIRRIKDAATGHLLDVAQDFHELKRSGVN-----YNCDCPRCKAAKK---LSIS 52

Query: 57 DSKGFYYCFSCH--VKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
           +K  + CF C+    GD +SFL +  G +F +++  LA    V
Sbjct: 53 PAKQIFKCFGCNELKGGDSVSFLMSAEGMTFNDALDYLAKKFNV 96


>gi|315650019|ref|ZP_07903099.1| DNA primase [Eubacterium saburreum DSM 3986]
 gi|315487789|gb|EFU78092.1| DNA primase [Eubacterium saburreum DSM 3986]
          Length = 182

 Score = 91.5 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 12/108 (11%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           +++     +S ++ QY           +  +  CCPFH EKTPS         +YCF C 
Sbjct: 4   EEIKEKYSMSEILEQY------GFKPNRAGFI-CCPFHKEKTPSMKIYAKS--FYCFGCG 54

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116
             GD   F++ +  C+F E+ + L    GV       K  +  + +  
Sbjct: 55  RHGDIFDFVAGMENCNFSEAYRSLG---GVEDNSRKAKFAEYRRRKAR 99


>gi|254884976|ref|ZP_05257686.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837769|gb|EET18078.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 1019

 Score = 91.5 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 16/123 (13%)

Query: 1   MNYPRDFIKDLLIHIP--ISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPS---FHC 55
           M +  + I  +       + +++  + +  +        DY   CP    K  S   F  
Sbjct: 1   MYFNENEISRIKSASDGRLLDVVQDFRELRKSGK-----DYVCECP----KCRSAKKFTV 51

Query: 56  NDSKGFYYCFSCHVKG-DHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKI 113
           +  K  + CFSC + G   +S+L  + G  + ++++ LA    V L P  D    K  + 
Sbjct: 52  SPGKNLFKCFSCQIGGEGAVSYLMNIEGYGYTDALEYLAKKFCVLLDPHPDKPAGKPVQK 111

Query: 114 QTD 116
              
Sbjct: 112 MKK 114


>gi|86741052|ref|YP_481452.1| DNA primase catalytic core-like protein [Frankia sp. CcI3]
 gi|86567914|gb|ABD11723.1| DNA primase catalytic core-like [Frankia sp. CcI3]
          Length = 641

 Score = 91.5 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 85/354 (24%), Positives = 136/354 (38%), Gaps = 31/354 (8%)

Query: 105 PKIEKKEKIQTDLIRLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAP 163
           P   +       L   I  A  ++   L   A         +    D  +   + +GYAP
Sbjct: 225 PPPRQASAEHARLYDAIRAAARWYTLHLTGAADGPAGRMLAERGLADVASDPRWMVGYAP 284

Query: 164 DSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR 223
                L + L   GF+E+++++AGL        T  DRFR+RL+F +R   G+++ F GR
Sbjct: 285 PGWTGLVDQLHALGFTEQELLDAGLAARTRRG-TLVDRFRHRLLFGLRDPDGRIVGFIGR 343

Query: 224 TLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV 283
            L  G++ KYLNSP T+LF K + L+      + L    R           ++VEG  DV
Sbjct: 344 AL-DGQTPKYLNSPTTVLFDKSRLLFGLAEQRDLLAAGARP----------VVVEGPTDV 392

Query: 284 LSLCQAGVQN-----VVSSLGTALTEYQLRLL---WKLSPRIVLCFDGDDPGLRAAYKAI 335
           L++  A  Q       V++ GTA T    R+L         I +  D D  GLRAA +A 
Sbjct: 393 LAVAVAARQTGRALAAVAACGTAFTADHARVLGSATPGRDGITVAHDPDPAGLRAAARAY 452

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES---LPLVDMLWKR---E 389
            ++        R++   L  G DP   +   G  A    + +     PL   +  +    
Sbjct: 453 QVLRDL---DTRLHHADLPAGADPAGLLATAGPDALRAALSDPARLRPLAAAVIDQRLAW 509

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
            ++      + +      +   I   +D  L          R+       I   
Sbjct: 510 LDDDHRRFLEHQFTALRAVAPIIAT-EDPALVGGLVSYTAGRIGLDASDVIGAV 562


>gi|163816297|ref|ZP_02207664.1| hypothetical protein COPEUT_02485 [Coprococcus eutactus ATCC 27759]
 gi|238925940|ref|YP_002939458.1| DNA primase [Eubacterium rectale ATCC 33656]
 gi|158448492|gb|EDP25487.1| hypothetical protein COPEUT_02485 [Coprococcus eutactus ATCC 27759]
 gi|238877617|gb|ACR77324.1| DNA primase [Eubacterium rectale ATCC 33656]
 gi|295093150|emb|CBK82241.1| DNA primase (bacterial type) [Coprococcus sp. ART55/1]
          Length = 211

 Score = 91.1 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 18/154 (11%)

Query: 11  LLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69
           +  ++    +  QY +  +R           ACCPFH +KTPS   +     YYCF C  
Sbjct: 7   VKENVTARQVAMQYGIKINRSG--------LACCPFHKDKTPSMKIDK---RYYCFGCGD 55

Query: 70  KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129
            GD + F++   G +  E+  ++A+  G+     +    KK   +    ++++       
Sbjct: 56  TGDAIDFVAKYFGLAPKEAAMKIASDFGLNYDATNRAPPKKMAPKKTPEQILDE------ 109

Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAP 163
              +       +Y+L  +    +A +     + P
Sbjct: 110 EQKQCFCVLSDYYHLLRKWKTEYAPKSMDEEWHP 143


>gi|295103872|emb|CBL01416.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii SL3/3]
          Length = 218

 Score = 91.1 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
           CCPFH+++TPS   +     +YCF C   GD + F + L G    E+  RLA   GV   
Sbjct: 3   CCPFHNDRTPSMKVDS---RFYCFGCGASGDVIDFAALLHGLGKREAAVRLAEDFGVS-Y 58

Query: 102 VVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
                     K         + A   F  
Sbjct: 59  EKSGNAPPDRKRHNRSQPRQKSAEQRFQE 87


>gi|283796264|ref|ZP_06345417.1| putative DNA primase [Clostridium sp. M62/1]
 gi|291076200|gb|EFE13564.1| putative DNA primase [Clostridium sp. M62/1]
          Length = 211

 Score = 91.1 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 10/164 (6%)

Query: 29  RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88
           R   N         CPFH +K PS   +     ++CF C   GD + F+S L   S  E+
Sbjct: 23  RVGRNG-----MCVCPFHADKNPSMKVDR---RFHCFGCQADGDVIDFVSRLEAVSPKEA 74

Query: 89  VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148
              LA      +P  D +  +  K + +         + +   +       L  +  +  
Sbjct: 75  ALMLAQEF--SIPYEDKEPPRHRKPRQETPEQRFRRMERYCFRVLCDYRNLLRRWKRDYA 132

Query: 149 IDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDG 192
             +   +   L      +    ++L     S +    A L+ID 
Sbjct: 133 PKTPDEDFHPLFVEALQKQDYVDYLLDVLLSPDMEERAALIIDC 176


>gi|160945890|ref|ZP_02093116.1| hypothetical protein FAEPRAM212_03423 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443621|gb|EDP20626.1| hypothetical protein FAEPRAM212_03423 [Faecalibacterium prausnitzii
           M21/2]
          Length = 930

 Score = 91.1 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 18/129 (13%)

Query: 9   KDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           + +   + +      Y ++  R           ACCPFHD+K PS   N+   ++YCF C
Sbjct: 7   ETVKQAVTVKEAAQLYGIEVKRGG--------MACCPFHDDKNPSMKLNED--YFYCFGC 56

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVD--PKIEKKEKIQTDLIRL 120
              GD +   +     S  E+ ++LA   G+       P  +   +  +++K + D    
Sbjct: 57  GASGDVIDLTARFYNLSPKEAAEKLAQDFGLIYDSQAPPRRNYVRQKTQRQKFKEDRDHT 116

Query: 121 IEVATDFFH 129
             V  D+FH
Sbjct: 117 FRVLADYFH 125


>gi|78356964|ref|YP_388413.1| DNA primase-like [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78219369|gb|ABB38718.1| DNA primase-like protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 1103

 Score = 91.1 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 138/447 (30%), Gaps = 39/447 (8%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPS---FHCNDSKGFYYCFS 66
            L+  + I ++  + +    R T          CP H   + S    H    K  +YCF 
Sbjct: 14  RLVTEMDIGDVARELLP--GRITQETGQRLMCDCPNHQ--SQSRLALHVMLDKQGWYCFG 69

Query: 67  CHVKGDHLSFLSALL------GCSFI------ESVQRLAAIAGVPL-------PVVDPKI 107
           C V GD L  +  +       G S        ++   LA  AG+P             + 
Sbjct: 70  CGVGGDVLQLVEFIQTGSVTAGQSGPMPDSHRQARDYLAKKAGLPPLSRYGLSQERLAQT 129

Query: 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167
           E     +  +   +      +H  LK +  + L +   +  +    I+   +GYA ++  
Sbjct: 130 EADRAFELRVKDALTSLARLYHARLKESP-EVLDWLKSKYALSEETIDDLLIGYADNASG 188

Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
           ++ +    +    ++ + A       +       F  R++FP   SRG+V+   GR    
Sbjct: 189 AVAQLTGGEDGFSKRELAATGAFRPTSQDGLTPFFERRIVFPYW-SRGRVVFMIGRKTPW 247

Query: 228 GESVKYLNS--PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
              V +      +  +  + +  Y      N L     +D        +I+ EG  D L+
Sbjct: 248 TPDVGWEQGKYKKLPVHDEHQRPYVADFINNAL--LFNEDCLLARPGKVIITEGVTDCLA 305

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344
           L Q G+  V             RL+        V     ++        A+         
Sbjct: 306 LMQLGLPTVSPVTVRIRAADWERLIPKLRGVETVYICQDNELSQAGLKGALQTARTLAEH 365

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
                 V L     P S  +   +    +    +  +      +    R          L
Sbjct: 366 KIDTRLVTL-----PLSETQISARQELTERFSLTASVGPKELAKLLAGRPAEEIQAAEAL 420

Query: 405 EIHLK-NCINHIKDQKLRYYYSQAIRD 430
               K +  ++I     R  + + + +
Sbjct: 421 LATAKIDVNDYIAAGHTREDFERLLAE 447


>gi|39939035|ref|NP_950801.1| DNA primase [Onion yellows phytoplasma OY-M]
 gi|39722144|dbj|BAD04634.1| DNA primase [Onion yellows phytoplasma OY-M]
          Length = 441

 Score = 90.7 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 91/430 (21%), Positives = 165/430 (38%), Gaps = 76/430 (17%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVK--GDYWACCPFHDEKTPSF-HCND 57
           MNY +D I  +  + P+       V   +           Y   CP H    P+  H   
Sbjct: 1   MNY-QDKINHIKTNFPMI------VLLKKLNIIPPNFNTKYRFPCPIHQGNNPTCCHLTS 53

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAA---------------------- 94
                +C+ C    D +     + G  +F  +++++                        
Sbjct: 54  DNKI-HCWKCCKDYDIIDVYMEIRGIKTFNNALEKINNFMKTQEFKNLIQQQTSTPNISY 112

Query: 95  ---IAGVPLPVVDPKIEKKE------KIQTDLIRLIEVATDFFHHSLKNARDKRLH---- 141
                      ++  I++KE      ++  ++  L     D++H+ L   R+   H    
Sbjct: 113 KPFKYQFQPNKINNPIDEKEINTTKTQLFKEISPLFNQIRDYYHYLLTTNRNNESHLGLE 172

Query: 142 YYLDERGIDSHAIEMFKLGYAPDS----RYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT 197
           Y   +R +    I+ FKLGYAP S     + L  + ++K  + ++++E G + +  N   
Sbjct: 173 YLTQKRKLTLETIKEFKLGYAPLSDKPLSFRLVNYFKKKNINIDQLLEYGFIKEKTNQQN 232

Query: 198 ---SYDRFRNRLIFPIRSSRGQVIAFGGR-----TLSKGESVKYLNSPETILFHKGKNLY 249
               +D F   +I PI +   +   F        T  + +     N  +T  FH     Y
Sbjct: 233 KKYYHDTFHGSIIIPIENGYNKTFHFYQNHFRDTTYFQPKYQSLNNFSQTPTFHFS---Y 289

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQL 307
            FF AL Y++K          +  II+ EG+ DV+S  Q G++NVV  +  A  L++ Q+
Sbjct: 290 RFFEALPYIKK----------TKTIIIHEGFFDVISCWQHGIKNVVGLICVAQLLSQTQM 339

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIRC 365
            +L K   +++   D D+ G +      + +    IP      +       +D D  +R 
Sbjct: 340 DILKKEKIKVITALDNDETGRKRNAALGEQLKEQQIPYEIRRILSPYDKTCKDVDDLLRQ 399

Query: 366 YGKTAFEKLI 375
           YGK A++K  
Sbjct: 400 YGKEAYQKCF 409


>gi|85057499|ref|YP_456415.1| DNA primase [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789604|gb|ABC65336.1| DNA primase [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 441

 Score = 90.7 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 88/426 (20%), Positives = 156/426 (36%), Gaps = 75/426 (17%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGD--YWACCPFHDEKTPSF-HCNDSKGF 61
           ++ IK +  + P+       V   + K      +  Y   CP H  + P+  H ND    
Sbjct: 4   QNKIKHIKTNFPMI------VLLKKLKILPTNFNIKYRFPCPIHQGQNPTCCHINDHNQI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGC-SFIESVQRLA-----AIAG--------VPLPVVDPKI 107
            +C+ C    D +     +    SF E++QR+                  +     +P  
Sbjct: 58  -HCWKCGRDYDIIDVYREIRQIKSFSEAIQRIGHFMKNQEFNNLIQQEKEITTTSSNPFQ 116

Query: 108 EKKEK---------------IQTDLIR---LIEVATDFFHHSLKNARDKRLHY----YLD 145
            + +                    L     L     D++H+ L    +            
Sbjct: 117 HQYQTKQSQNPIDEHQIQLIKNQLLKETSPLFNQIRDYYHYLLITNHNNESSMGLEYLTQ 176

Query: 146 ERGIDSHAIEMFKLGYAP----DSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT---S 198
           +R +    I+ FKLGYAP       + L   L++K     K++E G + +  N       
Sbjct: 177 KRKLTLETIKEFKLGYAPLLNKPLSFRLSNFLKKKNIDTTKLVEYGFIKEKTNQKGTKYY 236

Query: 199 YDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLNSPETILFHKGKNLYNFFG 253
           +D F   +I PI +   +   F           + +     N  +   FH     Y FF 
Sbjct: 237 HDTFHGSIIIPIENGYNKTFHFYQNNFREVSYFQSKYQSINNFSQIPTFHFS---YRFFE 293

Query: 254 ALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQLRLLW 311
           AL Y++K          +  II+ EG+ DV+S  Q G++NVV  +  A  L++ Q+ +L 
Sbjct: 294 ALPYIKK----------TKTIIIHEGFFDVISCWQHGIKNVVGLICVAQLLSQTQMDILK 343

Query: 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIRCYGKT 369
           K + ++++  D D+ G +      + +    IP      +       +D D  +R YGK 
Sbjct: 344 KEAIKVIIALDNDETGRKRNEALGEQLKEQQIPYEIRRILPPYDKTCKDVDDLLRQYGKE 403

Query: 370 AFEKLI 375
            ++K  
Sbjct: 404 VYQKCF 409


>gi|197294439|ref|YP_001798980.1| DNA primase [Candidatus Phytoplasma australiense]
 gi|171853766|emb|CAM11695.1| DNA primase [Candidatus Phytoplasma australiense]
          Length = 598

 Score = 90.3 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 81/437 (18%), Positives = 159/437 (36%), Gaps = 65/437 (14%)

Query: 36  KGDYWACCPFHDEKTPSF-HCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL-- 92
              Y   CP H  K P+     +     +CF C  + D +       G  F ES++R+  
Sbjct: 31  NRKYRFPCPIHQGKNPTCCRITEDNAI-HCFKCTKRYDIVDVYQRTRGLDFNESIRRILS 89

Query: 93  -------------------------AAIAGVPLPVVDPKIEKKEKIQTDLIRL---IEVA 124
                                                 + + K   +  L  +       
Sbjct: 90  FMKSQEFKTLLQEEQQITKLTKSPFKQQYHSKSAYPTDETQLKTAKRKLLKEVSPLFNQI 149

Query: 125 TDFFHHSLKNARDKRLH----YYLDERGIDSHAIEMFKLGYAPDS----RYSLREHLRQK 176
            D++H+ L   ++   H    Y  ++R +    I+ F LG+AP S     +    + ++K
Sbjct: 150 RDYYHYLLTANQNNESHQGIKYLTEKRKLTPATIKEFSLGFAPLSDKPLSFRFFNYCQKK 209

Query: 177 GFSEEKIIEAGLLIDGDNSAT---SYDRFRNRLIFPIRSSRGQVIAFGGRT-----LSKG 228
             +  K+IE G + +  +       +D F   +I PI + R     F         + K 
Sbjct: 210 NINIHKLIEYGFIKEKTSKKGSKYYHDAFNGSVIIPIENGRQHTFHFYQNNFQNTGIFKP 269

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
           +     N  +T  F+     Y FF AL Y++           +  +I+ EG+ DV+S  Q
Sbjct: 270 KYQSLTNFSQTPTFYFS---YRFFEALPYIK----------QAKTVIIHEGFFDVISCWQ 316

Query: 289 AGVQNVVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
            G++NVV  +  A  L++ Q+ +  K   ++++  D D+ GL    +    +  + +   
Sbjct: 317 RGIKNVVGLICIAQQLSQAQIDIFKKEQIKVIIALDNDETGLNRNKELAAQLKSNQVDCE 376

Query: 347 RVNFVLLSR--GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
               +       +D D  +R +G  A++K  +++             + + N   +    
Sbjct: 377 IRRILPPYSKTCKDVDDLLRNHGYQAYKKCFLDNSDPYAGYEGYPPYDFAVNLFGKNTVE 436

Query: 405 EIHLKNCINHIKDQKLR 421
            ++ K  +N  +   L+
Sbjct: 437 IVNSKRSLNSKESPTLQ 453


>gi|295090195|emb|CBK76302.1| DNA primase (bacterial type) [Clostridium cf. saccharolyticum K10]
          Length = 1043

 Score = 90.3 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 74/602 (12%), Positives = 171/602 (28%), Gaps = 57/602 (9%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFHD++ PS   +     ++CF C   GD + F + L   S  E+ ++LA   G  
Sbjct: 31  MACCPFHDDRHPSMKVDA---RFHCFGCGADGDVIDFTARLYDLSPKEAAEKLAQDFG-- 85

Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159
           L   +    ++  ++                 ++  + +     L +     H +  ++ 
Sbjct: 86  LSYDNKAPPRRSYVRQKS-----------EAQVRKEKREHGWRVLTDY---YHLLRKWEA 131

Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219
            Y+P            +   ++  +   L    D+S    D++       I +  G+V  
Sbjct: 132 DYSPKMPDEDPHPRFLEAIQKKDYMGYLLDTFLDSSTEEQDQWIAEHTAEISAIEGRVNI 191

Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279
              +  ++    +     E  +    K L+     + YL    R      +++ +I ++ 
Sbjct: 192 MADKPTNRERLQQITAGIEQGI----KELFESEKYMRYLSVMSRFHRYSVNNTMLIYMQK 247

Query: 280 YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVL 339
               L       +N               +      + +     D           +   
Sbjct: 248 PDATLVAGYNKWKNQFERHVKRGEHGITIIAPTPFKKKIEEQKLDPDTKAP-ILDAEGKA 306

Query: 340 CHLIPGNRVNFVLLSRGEDPDSF-------------IRCYGKTAFEKLIVESLPLVDMLW 386
                   +      +  D                        AF + +  S P+   + 
Sbjct: 307 VMEEREVEIPMFRPVKVFDVSQTDGKPLPELASTLSGNVQNYEAFMEALRRSAPVPLSVE 366

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
                   + +PD++        + +  +            I          Y       
Sbjct: 367 PMAANMDGYFSPDQQRIAIRAGMSEVQTVSAAV------HEIA---HSKLHNYAKAQEEA 417

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
            R   K    +  +   +   +S              E +     I + +  +E  +  A
Sbjct: 418 ARAGDKEPPKKKDRNTEEVEAESISYAVCQYYGIQTGENSF--GYIANWSQGKELPELRA 475

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            +   N    +L + +   +         ++            L  +++   D   +S  
Sbjct: 476 SLETINKTAGELINDIDRHYKVICKERGIDL-----TAAPEPQLDPIEQLAADIDQFSFD 530

Query: 567 TEA----NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
            +     + VD R+   + L    R    S  ++ +++   +        K A L+  L 
Sbjct: 531 YDTYEYRDQVDNREDALRELTATLRSGDASGVRDWLQEFADENEPGEAVTKAAELLDRLD 590

Query: 623 EV 624
           ++
Sbjct: 591 QL 592


>gi|261366489|ref|ZP_05979372.1| putative CHC2 zinc finger protein [Subdoligranulum variabile DSM
           15176]
 gi|282571761|gb|EFB77296.1| putative CHC2 zinc finger protein [Subdoligranulum variabile DSM
           15176]
          Length = 1043

 Score = 89.2 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 74/602 (12%), Positives = 170/602 (28%), Gaps = 57/602 (9%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFHD++ PS   +     ++CF C   GD + F + L   S  E+ ++LA   G  
Sbjct: 31  MACCPFHDDRHPSMKVDA---RFHCFGCGADGDVIDFTARLYDLSPKEAAEKLAQDFG-- 85

Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159
           L   +    ++  ++                 ++  + +     L +     H +  ++ 
Sbjct: 86  LSYDNKAPPRRSYVRQKS-----------EAQVRKEKREHGWRVLTDY---YHLLRKWEA 131

Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219
            Y+P            +   ++  +   L    D+S    D++       I +  G+V  
Sbjct: 132 DYSPKMPDEDPHPRFLEAIQKKDYMGYLLDTFLDSSTEEQDQWIAEHTAEISAIEGRVNI 191

Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279
              +  ++    +     E  +    K L+     + YL    R      +++ +I ++ 
Sbjct: 192 MADKPTNRERLQQITAGIEQGI----KELFESEKYMRYLSVMSRFHRYSVNNTMLIYMQK 247

Query: 280 YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVL 339
               L       +N               +      + +     D           +   
Sbjct: 248 PDATLVAGYNKWKNQFERHVKRGEHGITIIAPTPFKKKIEEQKLDPDTKAP-ILDAEGKA 306

Query: 340 CHLIPGNRVNFVLLSRGEDPDSF-------------IRCYGKTAFEKLIVESLPLVDMLW 386
                   +      +  D                        AF + +  S P+   + 
Sbjct: 307 VMEEREVEIPMFRPVKVFDVSQTDGKPLPELASTLSGNVQNYEAFMEALRRSAPVPLSVE 366

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
                   + +PD +        + +  +            I          Y       
Sbjct: 367 PMAANMDGYFSPDRQRIAIRAGMSEVQTVSAAV------HEIA---HSKLHNYAKAQEEA 417

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
            R   K    +  +   +   +S              E +     I + +  +E  +  A
Sbjct: 418 VRAGDKEPPKKKDRNTEEVEAESISYAVCQYYGIQTGENSF--GYIANWSQGKELPELRA 475

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            +   N    +L + +   +         ++            L  +++   D   +S  
Sbjct: 476 SLETINKTAGELINDIDRHYKVICKERGIDL-----TAAPEPQLDPIEQLAADIDQFSFD 530

Query: 567 TEA----NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
            +     + VD R+   + L    R    S  ++ +++   +        K A L+  L 
Sbjct: 531 YDTYEYRDQVDNREDALRELTATLRSGDASGVRDWLQEFADENEPGEAVTKAAELLDRLD 590

Query: 623 EV 624
           ++
Sbjct: 591 QL 592


>gi|329898804|ref|ZP_08272473.1| DNA primase [gamma proteobacterium IMCC3088]
 gi|328920739|gb|EGG28204.1| DNA primase [gamma proteobacterium IMCC3088]
          Length = 284

 Score = 89.2 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 104/296 (35%), Gaps = 15/296 (5%)

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397
           +L  L  G +  F+ L  GEDPD+ +R  G  AFE LI ++ P+   L+    E  +  +
Sbjct: 1   MLPLLEDGRQAKFLFLDEGEDPDTLVRKLGTQAFESLIKDARPVEQFLFDMAAEGLNQES 60

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            + +A         +  +     +    QA+ DR                   K      
Sbjct: 61  LEGKASFSKRAVPLVQQLPSGVFKQLMWQALADRTGVDLASLTELAQIQTPKPKPILAQD 120

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
            +      L    + + + +  PS      +  L+  P +  +   E  DI   N+  + 
Sbjct: 121 LEPNSPNSLAPKPIQRHEKNSGPSKLALTCISLLLQRPDVATQVENE--DIAILNDSGES 178

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L S L +   +Q +     +         GELL +L  +                 +   
Sbjct: 179 LLSELLTLLRKQPHSNTAMLLGHWYGTAEGELLARLAGEESII---------PFDGLPVQ 229

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++  L    +      + + ++++I  ++ +G    +    S L E+  ++  +ES
Sbjct: 230 FKDCLRRLTK----HPKLKVLQERINDLSKRGIGSLSDTEKSELKELLAELRALES 281


>gi|260589349|ref|ZP_05855262.1| putative CHC2 zinc finger protein [Blautia hansenii DSM 20583]
 gi|260540430|gb|EEX20999.1| putative CHC2 zinc finger protein [Blautia hansenii DSM 20583]
          Length = 229

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 12/121 (9%)

Query: 15  IPISNLIGQYVDWDRR----KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           + I  ++ + V   +          K     CCPFHD++ PS      KGF  CF+C  K
Sbjct: 26  LNIFQVVKENVTARQAAEQYGLKVNKNGMV-CCPFHDDRHPSMKV--DKGFC-CFACGAK 81

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK----IEKKEKIQTDLIRLIEVATD 126
           GD ++F++     + +E+ ++LA    +P+     K     ++KEK +  L +  +   +
Sbjct: 82  GDVITFVADFFHLTPLEAAKKLAEDFRIPIFTDSSKKRNTGKEKEKPKRTLYQTEKKFEE 141

Query: 127 F 127
           +
Sbjct: 142 W 142


>gi|239622968|ref|ZP_04665999.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522620|gb|EEQ62486.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 210

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 11/107 (10%)

Query: 9   KDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           + +   +P+      Y +  +R           ACCPFH+++ PS   N+   ++YCF C
Sbjct: 5   ETIKAAVPVRQAAEHYGLRVNRNG--------MACCPFHNDRNPSLKLNEE--YFYCFGC 54

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114
             KGD + F++ L   S  E+ QRLAA  G+            +  +
Sbjct: 55  GAKGDVIDFVARLFDLSNYEAAQRLAADFGISTEPGQAVAVPHKTKR 101


>gi|182418565|ref|ZP_02949846.1| CHC2 zinc finger domain protein [Clostridium butyricum 5521]
 gi|237667978|ref|ZP_04527962.1| DNA primase related protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
 gi|182377568|gb|EDT75119.1| CHC2 zinc finger domain protein [Clostridium butyricum 5521]
 gi|237656326|gb|EEP53882.1| DNA primase related protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
          Length = 856

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 14/89 (15%)

Query: 8  IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC----NDSKGFYY 63
          + ++ + + I   IG+            +  Y   CPFH EKTPS       N +K  Y 
Sbjct: 4  LNEIDLKVLIEQEIGE---------KFNRDGYI-KCPFHSEKTPSMSVKFFPNANKQRYK 53

Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          C+ C  KGD + F+       + E+ + L
Sbjct: 54 CWGCECKGDAIDFIMNYKNMKYNEAREYL 82


>gi|323451887|gb|EGB07763.1| hypothetical protein AURANDRAFT_9441 [Aureococcus
          anophagefferens]
          Length = 56

 Score = 88.4 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 15 IPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDH 73
            I  +     ++ + R         WA CPFHDE+T SF  N  +G Y CF C   GD 
Sbjct: 1  TDIVAVAEHLGLELETRGAAT-----WALCPFHDERTASFSLNSERGLYKCFGCGAGGDV 55

Query: 74 L 74
          +
Sbjct: 56 I 56


>gi|39939055|ref|NP_950821.1| DNA primase [Onion yellows phytoplasma OY-M]
 gi|39722164|dbj|BAD04654.1| DNA primase [Onion yellows phytoplasma OY-M]
          Length = 441

 Score = 88.4 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 91/430 (21%), Positives = 164/430 (38%), Gaps = 76/430 (17%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVK--GDYWACCPFHDEKTPSF-HCND 57
           MNY +D I  +  + P+       V   +           Y   CP H    P+  H   
Sbjct: 1   MNY-QDKINHIKTNFPMI------VLLKKLNIIPPNFNTKYRFPCPIHQGNNPTCCHLTS 53

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAA---------------------- 94
                +C+ C    D +     + G  +F  +++++                        
Sbjct: 54  DNKI-HCWKCCKDYDIIDVYMEIRGIKTFNNALEKINNFMKTQEFKNLIQQQTATPNISY 112

Query: 95  ---IAGVPLPVVDPKIEKKE------KIQTDLIRLIEVATDFFHHSLKNARDKRLH---- 141
                      ++  I++KE      ++  ++  L     D++H+ L   R+   H    
Sbjct: 113 KPFKYQFQPNKINNPIDEKEINTTKTQLFKEISPLFNQIRDYYHYLLTTNRNNESHLGLE 172

Query: 142 YYLDERGIDSHAIEMFKLGYAPDS----RYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT 197
           Y   +R +    I+ FKLGYAP S     + L  + +++     K++E G + +  N   
Sbjct: 173 YLTQKRKLTLETIKEFKLGYAPLSDKPLSFRLVNYCKKQNIDTTKLVEYGFVKEKTNQQN 232

Query: 198 ---SYDRFRNRLIFPIRSSRGQVIAFGGR-----TLSKGESVKYLNSPETILFHKGKNLY 249
               +D F   +I PI +   +   F        T  + +     N  +T  FH     Y
Sbjct: 233 KKYYHDTFHGSIIIPIENGYNKTFHFYQNHFRDTTYFQPKYQSLNNFSQTPTFHFS---Y 289

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQL 307
            FF AL Y++K          +  II+ EG+ DV+S  Q G++NVV  +  A  L++ Q+
Sbjct: 290 RFFEALPYIKK----------TKTIIIHEGFFDVISCLQHGIKNVVGLICVAQLLSQTQM 339

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIRC 365
            +L K   ++++  D D+ G +      + +    IP      +       +D D  +R 
Sbjct: 340 DILKKEKIKVIIALDNDETGRKRNAALGEQLKEQQIPYEIRRILSPYDKTCKDVDDLLRQ 399

Query: 366 YGKTAFEKLI 375
           YGK A++K  
Sbjct: 400 YGKEAYQKCF 409


>gi|119714237|ref|YP_919379.1| DNA primase catalytic core [Nocardioides sp. JS614]
 gi|119526146|gb|ABL79516.1| DNA primase catalytic core, N-terminal domain [Nocardioides sp.
            JS614]
          Length = 1980

 Score = 88.4 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 84/415 (20%), Positives = 138/415 (33%), Gaps = 39/415 (9%)

Query: 99   PLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158
             +   +   +  +     +  L + A  +F      +            G D      + 
Sbjct: 1559 EVTAENAFPDPNQIPAERIHELNQQALAYFESCYPRSWAPDYLRERM--GTDLTDQPNYA 1616

Query: 159  LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS---YDRFRNRLIFPIRSSRG 215
            LGYAP    SL  HL  +G + +++ +AGL+   +    +    D FR+RL+ PIR    
Sbjct: 1617 LGYAPGGGRSLMRHLTDQGATLDELTQAGLVSQRERDDGTTYCRDFFRDRLVLPIRDPHD 1676

Query: 216  ----QVIAFGGRTLSKGES-----VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDV 266
                 ++ F GR             KYLN+  T +F KG+ L+ +  A   L        
Sbjct: 1677 PTSEAILGFVGRRNPTKTDDDFAGPKYLNTRNTSIFTKGEALFGYAEARELLANGALP-- 1734

Query: 267  RRNSSSFIILVEGYMDVLS--LCQAGVQNVVSSLGTALTEYQLRLLWKL------SPRIV 318
                    ++VEG MD L+  L   G    ++ +GTALT  Q++LL           RI 
Sbjct: 1735 --------VIVEGPMDALAITLGSNGAAVGLAPMGTALTINQIKLLRANIEMVNGRDRIA 1786

Query: 319  LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES 378
            +  D D  G ++A KA                + L  G DP       G  A    I   
Sbjct: 1787 VATDSDPAGWKSAQKAF---WHLTAADLDPTQLELPDGLDPAKLFETEGADAIAAAIENR 1843

Query: 379  LPLVDMLWKRETENR-SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
             PL D +          ++  D R +L       +     +     + + +R +L     
Sbjct: 1844 SPLGDAMIDHLLRTAGHWSETDVRQKLIHQAARILGSRGSESWLDGF-ERLRHKLHLAPG 1902

Query: 438  KYITEHSGYGRYWKKNARHRDQKGPSQ--RLMQSSLVKGKLSKKPSLREAALLLT 490
                +         +N     Q    +     +    K     +    E  L   
Sbjct: 1903 ILEHQTVTESMERDRNRPAYAQARIDEINAEERKRTAKADPQSRRRAAEQRLAAA 1957


>gi|327404127|ref|YP_004344965.1| CHC2-family protein [Fluviicola taffensis DSM 16823]
 gi|327319635|gb|AEA44127.1| zinc finger, CHC2-family protein [Fluviicola taffensis DSM 16823]
          Length = 335

 Score = 88.4 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 127/376 (33%), Gaps = 48/376 (12%)

Query: 1   MNYPRDFIKDLLIHIPISNL-IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M +    +  L   + I+ + I   ++  R+            C  H+E TPS   ++ K
Sbjct: 1   MKFD---LNRLRE-LSITEVAIKLGIEVKRK---------KVLCFMHEENTPSLEFDEKK 47

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQR-----LAAIAGVPLPVVDPKIEKKEKIQ 114
           G ++C  C+  GD ++ +    G +F+ S        L   A +      P ++K+   +
Sbjct: 48  GMFFCHGCNQGGDVITLVEKYSGSNFLSSCSWLENAFLGGTANIQ-QFSSPSLKKRVIPK 106

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            ++        ++          K    YL  RG     IE  ++        S+     
Sbjct: 107 IEIH-ANSEIYEWLIS--HATISKSGIDYLKNRGFKESIIEQMQIRDL--QHPSIFFEDL 161

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           +K + +++++  GL  + D    +   +   ++FP      +V     R ++  E     
Sbjct: 162 RKKWGDDQLLNCGLAKNHDKYGITSIWWDPVILFPFIDPVSRVNYIQARRINNKEPKYLN 221

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
                 L     NL                         + + EG  D LS+ Q G   +
Sbjct: 222 L---IGLIKPTYNLSCLQQMK--------------LGDHLFICEGIPDTLSMIQLGYYCI 264

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
                ++  +  +  L  +   I++  D DD G R   K   L       G  +    L 
Sbjct: 265 GVLGASSFDKSLIPAL--MDFEIIVIPDRDDAGERFFQK---LRSEFNSVGKSIAKRQLP 319

Query: 355 RG-EDPDSFIRCYGKT 369
              +D + ++R   + 
Sbjct: 320 NNFKDVNEYLRSNSRN 335


>gi|307592387|ref|YP_003899978.1| primase 2 [Cyanothece sp. PCC 7822]
 gi|306986032|gb|ADN17912.1| Primase 2 [Cyanothece sp. PCC 7822]
          Length = 1087

 Score = 88.4 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
                 I+ L   + + ++IG+Y+    R  N     Y   CP H+ K P+      K  
Sbjct: 239 KIDGSIIERLHKKVDLLSVIGEYIPLYERGKN-----YVGHCPVHESKAPNLMVYPDKKM 293

Query: 62  YYCFSCHVKGDHLSFLS 78
           + C  C + G+  +FL 
Sbjct: 294 FTCHDCGIGGNIFNFLQ 310


>gi|124008858|ref|ZP_01693545.1| DNA primase [Microscilla marina ATCC 23134]
 gi|123985546|gb|EAY25438.1| DNA primase [Microscilla marina ATCC 23134]
          Length = 174

 Score = 88.0 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 12/90 (13%)

Query: 7  FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
           I D+  ++ I+ ++  Y       +N +      CCPFHD+K PS          +CFS
Sbjct: 14 TISDIKQNLSITTVLAHY-GLSVNGSNRL------CCPFHDDKKPSMEMFPKSDTVFCFS 66

Query: 67 --CHVKG---DHLSFLSALLGCSFIESVQR 91
            C V G   D + F+      S  E++ +
Sbjct: 67 SNCKVHGKPIDVIDFVMHQEKLSKHEAILK 96


>gi|160944425|ref|ZP_02091653.1| hypothetical protein FAEPRAM212_01935 [Faecalibacterium prausnitzii
           M21/2]
 gi|166033496|ref|ZP_02236325.1| hypothetical protein DORFOR_03222 [Dorea formicigenerans ATCC
           27755]
 gi|226325442|ref|ZP_03800960.1| hypothetical protein COPCOM_03247 [Coprococcus comes ATCC 27758]
 gi|282601123|ref|ZP_05980798.2| DNA primase [Subdoligranulum variabile DSM 15176]
 gi|293115434|ref|ZP_06604509.1| DNA primase [Butyrivibrio crossotus DSM 2876]
 gi|158444207|gb|EDP21211.1| hypothetical protein FAEPRAM212_01935 [Faecalibacterium prausnitzii
           M21/2]
 gi|166026681|gb|EDR45438.1| hypothetical protein DORFOR_03222 [Dorea formicigenerans ATCC
           27755]
 gi|225206185|gb|EEG88539.1| hypothetical protein COPCOM_03247 [Coprococcus comes ATCC 27758]
 gi|282570728|gb|EFB76263.1| DNA primase [Subdoligranulum variabile DSM 15176]
 gi|292810003|gb|EFF69208.1| DNA primase [Butyrivibrio crossotus DSM 2876]
          Length = 227

 Score = 88.0 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 5/119 (4%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH++KTPS   +     ++CF C   GD + F++AL G    E+  +LA+  G+ 
Sbjct: 42  MACCPFHNDKTPSMKLDK---RFHCFGCGADGDVIDFVAALYGLGKKEAAAQLASDFGLA 98

Query: 100 LPVVDP--KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEM 156
                P  +  K +  Q         A       L +       +  D           
Sbjct: 99  YEDWKPPGRARKPKPRQKSPEEQFREAKAHCFRVLADYLHLLRVWKTDYAPHSPEEAFH 157


>gi|291086761|ref|ZP_06344373.2| DNA primase [Clostridium sp. M62/1]
 gi|291076865|gb|EFE14229.1| DNA primase [Clostridium sp. M62/1]
          Length = 227

 Score = 88.0 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 5/119 (4%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH++KTPS   +     ++CF C   GD + F++AL G    E+  +LA+  G+ 
Sbjct: 42  MACCPFHNDKTPSMKLDK---RFHCFGCGADGDVIDFVAALYGLGKKEAAAQLASDFGLA 98

Query: 100 LPVVDP--KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEM 156
                P  +  K +  Q         A       L +       +  D           
Sbjct: 99  YEDWKPPGRARKPKPRQKSPEEQFREAKAHCFRVLADYLHLLRVWKTDYAPHSPEEAFH 157


>gi|291537750|emb|CBL10861.1| DNA primase (bacterial type) [Roseburia intestinalis XB6B4]
          Length = 96

 Score = 88.0 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
           A CPFH+++ PS +  D    +YCF+C   GD + F +        E+ QRLAA  GV 
Sbjct: 29 KALCPFHNDRHPSLYVADDH--FYCFACGAHGDVIDFAANFFDLPLYEAAQRLAADFGVD 86


>gi|325263239|ref|ZP_08129974.1| DNA primase [Clostridium sp. D5]
 gi|324031632|gb|EGB92912.1| DNA primase [Clostridium sp. D5]
          Length = 227

 Score = 87.6 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 7/164 (4%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH +KTPS   +     YYCF C   GD + F+S+L G    ++ ++L    G+ 
Sbjct: 29  MACCPFHPDKTPSMKVD---QRYYCFGCGETGDVIDFVSSLFGLGKKDAAEKLILDFGI- 84

Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159
             + D +  +K   +    +  E  +  +   L+   ++ + +           +  +K 
Sbjct: 85  --LYDNEQFQKNGKKRKQTKQAERGSPKYTE-LEERLEEMVEHSFGVLCDYMLWLRSWKE 141

Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR 203
            YAP         L  +  +    I   L I           + 
Sbjct: 142 EYAPKPDDENWHPLFVEALAMITYINYQLDILQYGLFEEKAMWM 185


>gi|119714105|ref|YP_919247.1| DNA primase catalytic core [Nocardioides sp. JS614]
 gi|119526014|gb|ABL79384.1| DNA primase catalytic core, N-terminal domain [Nocardioides sp.
            JS614]
          Length = 1967

 Score = 87.6 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 88/398 (22%), Positives = 152/398 (38%), Gaps = 39/398 (9%)

Query: 114  QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
            +  +I + E+   FF     ++  +         GID    E F+ G AP    +L +HL
Sbjct: 1510 RERMIEINEITQTFFESRFTDSWGRDYL--TGRFGIDLAGHEHFRPGQAPAGWTNLVDHL 1567

Query: 174  RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK------ 227
            R +G S  +++  G+     ++    DRFR+R++FP+    G+V+ F GR   +      
Sbjct: 1568 RHRGVSGAEMLATGVAT-TASTGRLIDRFRDRVMFPVVH-NGEVLGFVGRRRPELTDADQ 1625

Query: 228  ---GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284
                   KYLN+ +T LFHKG  LY               D      +  ++VEG MD +
Sbjct: 1626 ANGRGGPKYLNTADTPLFHKGAQLYG------------VVDELLAEGAVPVIVEGPMDAI 1673

Query: 285  S--LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342
            +  L  A     V+ LGT+LT+ Q   L  +    ++  D D  G  AA +   ++  H 
Sbjct: 1674 AVTLASAARYVGVAPLGTSLTDEQASQLGGIGRDPIVATDADLAGEVAAERDFWMLTPH- 1732

Query: 343  IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
              G    +     G DP   +   G  A    +     L D L     +N +       A
Sbjct: 1733 --GLDPGYARFPEGLDPADLLAQRGPAALTASLASGQTLGDQLLSERLDNLAPEQARVAA 1790

Query: 403  ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
               +  +          L       +R RL+    +   +     + W  + R   +   
Sbjct: 1791 MRVLAARPSRAWAPGTNL-------VRARLKLSQLQSRRDLRDAIKAWDADPRRAARAEL 1843

Query: 463  SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
            +      + ++   +K P+ R A L   +   P + ++
Sbjct: 1844 NSSSEVRARLEAAAAKSPAERWAPLAREV--DPRLAEQ 1879


>gi|317055406|ref|YP_004103873.1| DNA primase [Ruminococcus albus 7]
 gi|315447675|gb|ADU21239.1| DNA primase [Ruminococcus albus 7]
          Length = 197

 Score = 87.6 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 20/149 (13%)

Query: 3   YPRDFI-KDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           +P+  + ++    + +  +   Y +  +R             CPFH EKTPS        
Sbjct: 2   FPKITVFEEARQAVDMKTVALGYGLHINRSG--------MCLCPFHAEKTPSAKVYP--Q 51

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFI-ESVQRLAAIAGVPLP-------VVDPKIEKKEK 112
             +CF C    D +SF   + G +   ++V++L +  G+ +            +  K+ +
Sbjct: 52  RLHCFGCGESADVISFTQKMFGLAKPIDAVKKLNSDFGLNISIGQAPTAKEASEYVKRAE 111

Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLH 141
            +    +  + A    +  L   RD + +
Sbjct: 112 ERRAYEQWEKQAWRTLNDYLWLMRDWQEY 140


>gi|257438315|ref|ZP_05614070.1| DNA primase [Faecalibacterium prausnitzii A2-165]
 gi|257199277|gb|EEU97561.1| DNA primase [Faecalibacterium prausnitzii A2-165]
          Length = 88

 Score = 87.2 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 31  KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQ 90
             N       ACCPFH++KTPS   +     Y+CF C   GD + F +AL G    E+  
Sbjct: 25  GRNG-----MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLGKKEAAV 76

Query: 91  RLAAIAGVPLP 101
           +LA   G+   
Sbjct: 77  QLANDFGLSYE 87


>gi|148245108|ref|YP_001219801.1| DNA primase related protein [Clostridium kluyveri DSM 555]
 gi|219684068|ref|YP_002470450.1| hypothetical protein CKR_P40 [Clostridium kluyveri NBRC 12016]
 gi|146336988|gb|ABQ23599.1| DNA primase related protein [Clostridium kluyveri DSM 555]
 gi|219570576|dbj|BAH08559.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 868

 Score = 87.2 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 8/76 (10%)

Query: 43  CPFHDEKTPSFHC----NDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
           C FH +K PS       N++K  + CF C   GD + F+       +IE+ + L    G+
Sbjct: 30  CMFHPDKNPSLSIKFDGNNNKFKFKCFGCGEGGDAIDFIMKYRNMDYIEAREFL----GL 85

Query: 99  PLPVVDPKIEKKEKIQ 114
           P+   + + + +   +
Sbjct: 86  PVEKTESENQMERIEK 101


>gi|319902214|ref|YP_004161942.1| DNA primase [Bacteroides helcogenes P 36-108]
 gi|319417245|gb|ADV44356.1| putative DNA primase [Bacteroides helcogenes P 36-108]
          Length = 1033

 Score = 87.2 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 59/172 (34%), Gaps = 15/172 (8%)

Query: 1   MNYPRDFIKDLLIHI--PISNLIGQYVDWDRRKTNAVKGDYWACCPFH--DEKTPSFHCN 56
           M + ++ IK +       + ++IG + +  +R +     +Y   CP     EK    H +
Sbjct: 17  MYFTQNDIKRIKEASKGRLLDVIGDFHELRKRGS-----EYKCECPKCHGQEK---LHIS 68

Query: 57  DSKGFYYCFSC-HVKGD-HLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKI 113
            +K  + CFSC  +KG   L +L       F+E+   LA    V L P  + K  K  K+
Sbjct: 69  PAKQIFKCFSCPDIKGTEPLDYLQRAEDMQFLEACDYLARKFNVLLDPKPEKKTPKAAKM 128

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
           +           D F   +                       +F+       
Sbjct: 129 KKRSKEAKGENVDTFCARMLAGSGLTYQDVTAHIFKKGDTQSIFEAKTFRPG 180


>gi|299783171|gb|ADJ41169.1| DNA primase [Lactobacillus fermentum CECT 5716]
          Length = 277

 Score = 87.2 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 96/275 (34%), Gaps = 21/275 (7%)

Query: 281 MDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340
           MDV+S   AGV++ ++S+GT+ T+ Q+ ++ + + ++ +C+DGD  G  A  +A+ +   
Sbjct: 1   MDVISAFGAGVRSGIASMGTSFTDEQVAVIARTTDKLTICYDGDAAGQNAINRALTM--- 57

Query: 341 HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPD 399
                  +  V L  G DPD +++  G+  F++ +  +             +  +     
Sbjct: 58  LAASRLTLRVVQLPAGMDPDEYVQANGQAKFQEYLAHAEETPTAFRLHFLKQGLNLANQS 117

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIR--------------DRLQQLFQKYITEHSG 445
           E           +  + D   R  Y Q +                 L             
Sbjct: 118 ELLHYVEAALREVAKVTDPVERDLYIQQLAKDYHLNPATLTGQVQELAATAAPRPAYPEX 177

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             R  ++    R Q  P       S     L  K  L +  LL  + ++PA ++     +
Sbjct: 178 SPRQPRQAGTRRYQSTPPTTTTAPSTQAPPLLGKVELAQQRLLREMFHNPA-VRSHVGAI 236

Query: 506 ADIRYDNNELQKLWSFLFSDFVE--QKYFLPEEIH 538
            +  + +   Q L +                 ++ 
Sbjct: 237 ENFHFVDRPYQLLDAAAKEQLQRTGADEVDVAQLM 271


>gi|77414850|ref|ZP_00790964.1| DNA primase [Streptococcus agalactiae 515]
 gi|77159100|gb|EAO70297.1| DNA primase [Streptococcus agalactiae 515]
          Length = 283

 Score = 86.9 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 99/305 (32%), Gaps = 22/305 (7%)

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380
           +DGD  G  A  K+++L+         V+ V +    DPD F++      F++L+     
Sbjct: 1   YDGDRAGQNAIDKSLELL-----SDMTVDIVRIPNKMDPDEFLQANSAEDFKQLLENGRI 55

Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                +    +  + +           +   I        +  Y   + + L       +
Sbjct: 56  SNTEFYIHYLKPENTDNLQSEIAYVEKIAKLIAKSPSITAQNSYITKVAELLPDFDYFQV 115

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
            +     R   ++ +       +   +Q  L +       +  E  L   L+NHP +L E
Sbjct: 116 EQSVNNERLHHRSQQQASSSVQTSATVQ--LPQTGKLSAITKTEMQLFHRLLNHPYLLNE 173

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
                 +  +D  E+Q L+  L                  +      +   +++R     
Sbjct: 174 FRNR-DNFYFDTTEIQVLYELLKESGE-------------ITSYDLSQESDKVNRTYYII 219

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
                  E +I ++ +  ++A     + R L +Q + I +   Q   +G       LI+ 
Sbjct: 220 LEEQLPVEVSIGEI-EAVEKARDRLLKERDLRKQSQLIRQSSNQGDEEGALAALENLIAQ 278

Query: 621 LHEVH 625
              + 
Sbjct: 279 KRNME 283


>gi|257414234|ref|ZP_05591948.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257200738|gb|EEU99022.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
          Length = 277

 Score = 86.9 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 81/272 (29%), Gaps = 10/272 (3%)

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           +   +DPD FI+  G   ++K I  +        +   +    + P+ + +    +   +
Sbjct: 1   MKPYKDPDEFIKALGAEEYQKRIDTAENSFMFEIRILEQQYDMHDPESKTKFYNAVAEKL 60

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
               ++  R  Y  A+ D+     +      + YG      A           L +    
Sbjct: 61  CTFGEKLERDNYIAAVADKYMIGIEDLRRLVNQYGAKIGMAAGGAPPVRERSELRREQGS 120

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           + K        +  LL  LI H  +  +  + ++   +      K    L+  +      
Sbjct: 121 EKKKENGMIQSQKLLLTWLIEHTGLFPKIEKYISPEDFTEEIYHKAAEILYEQYRNTGTV 180

Query: 533 LPEEIHQRLCERGFGELLKQL----------DRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            P +I            +  L          +    + G    T E  + +     +Q  
Sbjct: 181 NPAKIVSMFQNEEEQREIAGLFHATIRGVETEGDKENGGYSKETFEKALKETIVRVKQNS 240

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
             Y    +       +++ +A   A  E EK 
Sbjct: 241 IEYHLKNMAPTDMAALQRSVADKKALEELEKV 272


>gi|240145189|ref|ZP_04743790.1| putative DNA primase [Roseburia intestinalis L1-82]
 gi|257202745|gb|EEV01030.1| putative DNA primase [Roseburia intestinalis L1-82]
 gi|291537613|emb|CBL10725.1| DNA primase (bacterial type) [Roseburia intestinalis M50/1]
          Length = 161

 Score = 86.9 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 12/102 (11%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            A CPFH+++ PS +  D    +YCF+C   GD + F +        E+ QRLAA  GV 
Sbjct: 29  KALCPFHNDRHPSLYVADDH--FYCFACGAHGDVIDFAANFFDLPLYEAAQRLAADFGVD 86

Query: 100 ---------LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSL 132
                    L     K E  ++   +    ++ A +++   L
Sbjct: 87  ANQPPTKEVLEKRRQKAEAPDERFEEACHKLDEA-EYYLDIL 127


>gi|317056911|ref|YP_004105378.1| DNA primase [Ruminococcus albus 7]
 gi|319788915|ref|YP_004090230.1| DNA primase [Ruminococcus albus 7]
 gi|315449180|gb|ADU22744.1| DNA primase [Ruminococcus albus 7]
 gi|315450782|gb|ADU24344.1| DNA primase [Ruminococcus albus 7]
          Length = 204

 Score = 86.9 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 18/198 (9%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
            ++   + +      Y           +G+  A CPFH E+ PS    D    YYCF C 
Sbjct: 5   DEVKELVDVPTAARSY------GVEVHRGN-MALCPFHRERHPSCKLYDDH--YYCFGCQ 55

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
             GD +  +  L G S IE+V++L +   + L V  P   +K   +     + E   +  
Sbjct: 56  AHGDVIKLVQELFGLSSIEAVKQLNSDFALGLDVDKPPDMEKVNRRRR--EIAERKAE-- 111

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
                 AR + ++  L          +M  +  +PD     R     +     + +    
Sbjct: 112 -----KARAEHMYDVLLRYFTLLDKYKMLYVPTSPDDETDRRFVYALQNIGYAEYMLETF 166

Query: 189 LIDGDNSATSYDRFRNRL 206
                          +R+
Sbjct: 167 NRFDKEQQEEIKTEVDRI 184


>gi|291086756|ref|ZP_06344357.2| putative CHC2 zinc finger protein [Clostridium sp. M62/1]
 gi|291076847|gb|EFE14211.1| putative CHC2 zinc finger protein [Clostridium sp. M62/1]
          Length = 1097

 Score = 86.9 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 20/130 (15%)

Query: 9   KDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           + +   +PI      Y ++  R           ACCPFHD+K PS   N+   ++YCF C
Sbjct: 6   ETVKQSVPIKEAAQMYGIEVKRGG--------MACCPFHDDKHPSMKLNED--YFYCFGC 55

Query: 68  HVKGDHLSFLSALLGCSFI-ESVQRLAAIAGVPLPVVDP-------KIEKKEKIQTDLIR 119
              GD +   + L    F  E+ ++LA   G+      P       +  + +K +     
Sbjct: 56  GATGDVIELTARLYNL-FPKEAAEKLAQDFGLIYDSQAPPRRYYVRQKSEAQKFKESRDH 114

Query: 120 LIEVATDFFH 129
              V  D+FH
Sbjct: 115 AFRVLADYFH 124


>gi|20808421|ref|NP_623592.1| DNA primase [Thermoanaerobacter tengcongensis MB4]
 gi|20517037|gb|AAM25196.1| DNA primase (bacterial type) [Thermoanaerobacter tengcongensis MB4]
          Length = 358

 Score = 86.9 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 100/333 (30%), Gaps = 39/333 (11%)

Query: 15  IPISNLIGQYVDWDRRK----TNAVKGDYWACCPFHDE--KTPS---FHCNDSKGFYYCF 65
           + I ++        R        A   +Y A CPF  +  K P     + N SK  YYC 
Sbjct: 5   LDILDVA------KRLGIRILRRASNEEYIARCPFCGDSKKDPEHGHLYLNVSKNVYYCV 58

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL--IEV 123
            C   GD +   + L   S  E+ +R+           +P  +++   +     +  IE 
Sbjct: 59  RCGEGGDAVDLYAKLENISRKEAYKRIKEEN----YPTNPAAKERADKRIKYNSVAPIET 114

Query: 124 ATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ--KGFSE 180
               +   L K   +      L +RG+             P+      E  ++  K    
Sbjct: 115 RDKVYRAFLDKLVLEPEHRKKLLKRGLSWEETVKNLYKSLPEEPQQRWEICKELIKEGYN 174

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
            K I      + D             + P++  +G++  F  R   +             
Sbjct: 175 LKGIPGFYQREKDGERYWDFVDYKGFLIPVKDVQGRIQGFQIRLDEEEFGKYVW------ 228

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
            F     L               + V    S  +I+ EG +             VS  G 
Sbjct: 229 -FSSRNKLNGTP-------AHAWQGVHGEPSKVVIVTEGPLKADVAHYLSRFTFVSVPGV 280

Query: 301 ALTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAY 332
              +    +L +  + +I + FD D    +A  
Sbjct: 281 TAIKGIEVVLKQLGAEKIYIAFDMDSLTNKAVQ 313


>gi|283795091|ref|ZP_06344244.1| DNA primase [Clostridium sp. M62/1]
 gi|291076733|gb|EFE14097.1| DNA primase [Clostridium sp. M62/1]
          Length = 209

 Score = 86.5 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 6/111 (5%)

Query: 16  PISNLIGQYVDWDRRKT--NAVKGDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72
            I  ++ + V+              Y  A CPFH+++ PS +  D    YYCF+C   GD
Sbjct: 2   RIFEIVKENVNLREAAELYGIDVNRYGKALCPFHNDRNPSLYVADDH--YYCFACGEHGD 59

Query: 73  HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIRLIE 122
            + F+  L   S  ++ ++L A   +             K  +T+  +L+E
Sbjct: 60  VIDFVGKLFQLSPYDAARKLMADFHLSPDKPPSAAALHAKRIRTEAQQLME 110


>gi|119383200|ref|YP_914256.1| zinc finger, CHC2-family protein [Paracoccus denitrificans PD1222]
 gi|119372967|gb|ABL68560.1| zinc finger, CHC2-family protein [Paracoccus denitrificans PD1222]
          Length = 345

 Score = 86.5 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 102/350 (29%), Gaps = 49/350 (14%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACC--PFHDEKTPSFHCND 57
           M+  R  ++ +   IPI+ +          R T          C  P H ++ PSF    
Sbjct: 1   MSRKRYDLERIKA-IPIATVAADLGFALSPRGT--------GRCRLPGHPDQRPSFSLRS 51

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117
               + CF C   G  +  + A+    F+ + + L       +        +   IQ  L
Sbjct: 52  ISNGFSCFGCQRSGSVIDLVMAMDNLDFLAACRWLDDNYLNSISAQPRSRRRPSTIQQTL 111

Query: 118 -----IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171
                     +A + +   L ++        YL  R   +  I  F++G   D     R 
Sbjct: 112 PVPVQSSSHGMAPEVYGWILDQSPLSASGRAYLQRRAFSAETIAHFRVGQIGDRTSLFRR 171

Query: 172 HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
            L   G    +     +               +  +       G V     R        
Sbjct: 172 ALSAFGMPRLEEAGLVM----QGRYGPLLCLPSNYLLFPFLQDGTVTYLQAR-------- 219

Query: 232 KYLNSPETILFHKGKNL---YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
           +  +  E   F   K L   YN                     S I + EG  DVLS  +
Sbjct: 220 RADDGKEYRWFCPAKLLPPPYNLD-------------ALAKPGSTITICEGITDVLSAHE 266

Query: 289 AGVQNVVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDL 337
            G+  +   L  A+      ++   +   + +  D D  G   A +  D 
Sbjct: 267 LGMLPI--GLLGAMRNLGTDIIDRLIGRNVAIFADADRSGRSLAKRLSDR 314


>gi|323484963|ref|ZP_08090317.1| hypothetical protein HMPREF9474_02068 [Clostridium symbiosum
           WAL-14163]
 gi|323401705|gb|EGA94049.1| hypothetical protein HMPREF9474_02068 [Clostridium symbiosum
           WAL-14163]
          Length = 214

 Score = 86.5 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH++KTPS   +     Y+CF C   GD + F +AL G    E+  +LA   G+ 
Sbjct: 29  MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFTAALYGLGKKEAAVQLAQDFGLS 85

Query: 100 LP--VVDPKIEKKEKIQTDLIRLIEVATDFFHHSL 132
                   K +K +  Q       + A +     L
Sbjct: 86  YEDWKPTGKAKKPKPRQKSPEEQFQEAKNRCFRIL 120


>gi|317057152|ref|YP_004105619.1| DNA primase [Ruminococcus albus 7]
 gi|315449421|gb|ADU22985.1| DNA primase [Ruminococcus albus 7]
          Length = 195

 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 19/134 (14%)

Query: 9   KDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           + +   I +  +   Y ++  R           A CPFH+E+TPS          +CF C
Sbjct: 5   EQVKSAIDMRTVAEGYGLEISRGG--------MALCPFHNERTPSAKIYPD--ALHCFGC 54

Query: 68  HVKGDHLSFLSALLGCSFI-ESVQRLAAIAGVPLP-------VVDPKIEKKEKIQTDLIR 119
               D + F   + G     ++V++L    G+ +            + +K+ + +     
Sbjct: 55  GTHVDVIGFTQKMFGLDKPIDAVKKLNEDFGLNIEIGKAPAAKEVSEYQKRVQEKRAYEE 114

Query: 120 LIEVATDFFHHSLK 133
             + A    +  L 
Sbjct: 115 WEKSAWRTLNDYLW 128


>gi|283796850|ref|ZP_06346003.1| putative CHC2 zinc finger protein [Clostridium sp. M62/1]
 gi|291075256|gb|EFE12620.1| putative CHC2 zinc finger protein [Clostridium sp. M62/1]
          Length = 916

 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/525 (11%), Positives = 147/525 (28%), Gaps = 18/525 (3%)

Query: 13  IHIPISNLIG---QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69
             + +  L+    +Y    ++       +    CPFHD++  SF  +   G ++CF+   
Sbjct: 5   AEVDLDRLVDYKTEYCSVIKK-HKITGDNLTGLCPFHDDRANSFSVDLKTGMWHCFAEDE 63

Query: 70  KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129
            G+ ++F + L G    E+ +++    G        + ++K K +   +    V+   F 
Sbjct: 64  GGNFVTFYAKLNGLDTKEAYKQILEKYG-----ALNEPQEKPKEKKPGLDHYTVSQYSFE 118

Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL 189
             L     K       ++  +           A  +    R+    K F  E      L 
Sbjct: 119 KRLPEDWLKEQCCLQTKKDRNGVQYLYIPYFDAEKNLALHRKRYGGKQFRWEYGKTDRLC 178

Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLY 249
           + G     +        +    S    +   G  TL    +       +     +   LY
Sbjct: 179 MYGLWQIEAIRNIGYAALVEGESDSQSMWYMGISTLGIPGASMMR--ADWAGVLQDLKLY 236

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309
                    +  + K  R       +         +L       V    G      ++R 
Sbjct: 237 IHVEPDKGGEAFLAKVTRALREGKFVGEVYKWSCRTLGCKDPSEVYMKYGKEEASEKIRK 296

Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
               + +I +  D     +  A   +      +     ++ +   +             T
Sbjct: 297 AISNAEQIDIEEDNIPEAVEGAPVNLRQPEGWIYSEKGISVIDEKKYAPVMVCRTPIIIT 356

Query: 370 AFEKLIVESLPLVDMLWKR---ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
              + +      +++ +KR     +     +    +     L +    +  +  + +  +
Sbjct: 357 QRLRSMETGEEKIEVAFKRDGQWHKAIYPRSTIFTSRAITALADLGCTVTSENAK-HIVK 415

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL-REA 485
            +     +         S     W+   R          L      +G  +        A
Sbjct: 416 FLAALEAENIDIIKKADSTSTFGWQSGKRFVPGHDKDIVLDIDPSQRGMAAAYCQNGTMA 475

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
             L  +   P   +++++ +    +    L+ +   +F  +    
Sbjct: 476 DWLKMI--KPHRSRDKFRFILAASFTAPLLRIIKQRIFFVYNWGG 518


>gi|295094133|emb|CBK83224.1| DNA primase (bacterial type) [Coprococcus sp. ART55/1]
          Length = 206

 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 16  PISNLIGQYVDWDRR----KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
            +   +   V   +          +GD   CCPFHD++ PS   N    ++YCF C   G
Sbjct: 2   NLFETVKSAVTVKQAAEYYGCKVNRGDMI-CCPFHDDRHPSMKLNRD--YFYCFGCGATG 58

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGVPLPVV 103
           D + F++ L G S  E+ ++LA   G+     
Sbjct: 59  DVIDFVARLFGLSSYEAAKKLAYDFGIDPDKP 90


>gi|295104069|emb|CBL01613.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii SL3/3]
          Length = 206

 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 16  PISNLIGQYVDWDRR----KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
            +   +   V   +          +GD   CCPFHD++ PS   N    ++YCF C   G
Sbjct: 2   NLFETVKSAVTVKQAAEYYGCKVNRGDMI-CCPFHDDRHPSMKLNRD--YFYCFGCGATG 58

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGVPLPVV 103
           D + F++ L G S  E+ ++LA   G+     
Sbjct: 59  DVIDFVARLFGLSSYEAAKKLAYDFGIDPDKP 90


>gi|210612416|ref|ZP_03289304.1| hypothetical protein CLONEX_01505 [Clostridium nexile DSM 1787]
 gi|210151586|gb|EEA82593.1| hypothetical protein CLONEX_01505 [Clostridium nexile DSM 1787]
          Length = 214

 Score = 85.7 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 31  KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQ 90
             N       ACCPFH++KTPS   +     Y+CF C   GD + F +AL G    E+  
Sbjct: 25  GRNG-----MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFTAALYGLGKKEAAV 76

Query: 91  RLAAIAGVPLPV-VDPKIEKKEKIQTD 116
           +LA   G+       P   KK K +  
Sbjct: 77  QLAQDFGLSYEDWKSPGKAKKPKPRQK 103


>gi|210613280|ref|ZP_03289645.1| hypothetical protein CLONEX_01852 [Clostridium nexile DSM 1787]
 gi|210151241|gb|EEA82249.1| hypothetical protein CLONEX_01852 [Clostridium nexile DSM 1787]
          Length = 227

 Score = 85.7 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 30  RKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESV 89
              N       ACCPFH++KTPS   +     Y+CF C   GD + F +AL G    E+ 
Sbjct: 37  AGRNG-----MACCPFHNDKTPSMKLD---QRYHCFGCGADGDVIDFTAALYGLGKKEAA 88

Query: 90  QRLAAIAGVPLP 101
            +LA   G+   
Sbjct: 89  VQLAQDFGLSYE 100


>gi|302534591|ref|ZP_07286933.1| predicted protein [Streptomyces sp. C]
 gi|302443486|gb|EFL15302.1| predicted protein [Streptomyces sp. C]
          Length = 139

 Score = 85.3 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA 94
          CPFH++ TPSF  N  +  + C SC   GD  + +    G  F+ + + LAA
Sbjct: 42 CPFHEDDTPSFSWNTDRQLWKCHSCGKGGDSFNLIMEKEGTDFVGA-RALAA 92


>gi|153812928|ref|ZP_01965596.1| hypothetical protein RUMOBE_03335 [Ruminococcus obeum ATCC 29174]
 gi|149831006|gb|EDM86096.1| hypothetical protein RUMOBE_03335 [Ruminococcus obeum ATCC 29174]
          Length = 206

 Score = 85.3 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 14/109 (12%)

Query: 29  RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88
           +   N +      CCPFH++  PS   N +  +YYCF C   GD + F++ L G S  E+
Sbjct: 23  KIGRNNMI-----CCPFHNDHYPSMKLNTT--YYYCFGCGATGDVIQFVANLFGLSNYEA 75

Query: 89  VQRLAAIAGVPLPVV-------DPKIEKKEKIQTDLIRLIEVATDFFHH 130
            +++A   G+             P+  + +  Q +L    ++  ++ H 
Sbjct: 76  AKKIAVDFGITPDNPPVIAALKKPEYMETKSRQKELHECQKMVCEYLHR 124


>gi|119715816|ref|YP_922781.1| DNA primase catalytic core [Nocardioides sp. JS614]
 gi|119536477|gb|ABL81094.1| DNA primase catalytic core, N-terminal domain [Nocardioides sp.
            JS614]
          Length = 1797

 Score = 85.3 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 94/354 (26%), Positives = 140/354 (39%), Gaps = 29/354 (8%)

Query: 115  TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
              +I L   A D +      +         D  G D      +++GYAP    SL +HL 
Sbjct: 1412 ERIIELNHWALDHYSAMYPKSWAPDYL--RDRLGNDLTDDPRYQVGYAPPGPTSLIQHLA 1469

Query: 175  QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES---- 230
             +G SEE++++AGL    +      D FR+RL+FPI S    V   G R  +K +     
Sbjct: 1470 TRGTSEEELLDAGLARRTERGH-LVDAFRDRLVFPIYSGSDLVGFIGRRNPTKPDGEFSG 1528

Query: 231  VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS--LCQ 288
             KYLN+  T +F KG+ L+    A              ++ S  +LVEG MD ++  L  
Sbjct: 1529 PKYLNTRSTAVFAKGEALFGLTEA----------TADLDAGSTPVLVEGPMDAIAVTLAS 1578

Query: 289  AGVQNVVSSLGTALTEYQLRLLWKL----SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344
             G    ++ LGTA TE Q   L          IV+  D D  G ++A +A   +      
Sbjct: 1579 GGEYVGIAPLGTAFTETQAATLKPHLREAPSNIVIATDPDSAGWQSAQRAFWRLAALRAA 1638

Query: 345  GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
                  + L  G DP   +R +GK A    + +S     +L  R  ++    T D+    
Sbjct: 1639 ---PRHLTLPEGVDPADALRKHGKAALRTGLADSRDFALVLVDRVLDD-RLATHDDAFAR 1694

Query: 405  EIHLKNCINHIK--DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
              H +     I          Y+Q   +RL    Q  I E    G  W  + R 
Sbjct: 1695 VDHCREAARTIGTLAPDRWLAYAQHASERLDLPLQAVIDEVLEAGAEWTDDPRA 1748


>gi|39939010|ref|NP_950776.1| DNA primase [Onion yellows phytoplasma OY-M]
 gi|39722119|dbj|BAD04609.1| DNA primase [Onion yellows phytoplasma OY-M]
          Length = 441

 Score = 85.3 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 89/438 (20%), Positives = 164/438 (37%), Gaps = 80/438 (18%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVK--GDYWACCPFHDEKTPS-FHCNDSKG 60
            +  I  +  + P+S      V   +           Y   CP H  + P+  H N++  
Sbjct: 3   NQTKINHIKTNFPMS------VLLKKLNILPPNFNDKYRFPCPIHQGQNPTTCHINENNN 56

Query: 61  FYYCFSCHVKGDHLSFLSAL-LGCSFIESVQRLAAIAGV-------PLPVVDPKIEK--- 109
             +C+ C    D +     +    +F E V R+              L   + +  K   
Sbjct: 57  I-HCWKCGRDYDVIDVYQEVRRNKNFPEVVNRI---YHFMKTQEFKTLNQQEKESNKITT 112

Query: 110 -----------------------KEKIQTDLIRLIEVATDFFHHSLKNARDKRLH----Y 142
                                  K ++  ++  L     D++H+ L + R+   H    Y
Sbjct: 113 NPFKKPYQSQTSHPIDETQIQLIKNQLFKEISPLFNQIRDYYHYLLTSNRNNESHLGIEY 172

Query: 143 YLDERGIDSHAIEMFKLGYAPDSRY----SLREHLRQKGFSEEKIIEAGLLIDGDNSAT- 197
              +R +    I+ FKLGYAP S           L++K  + +K++E G + +  N    
Sbjct: 173 LTQKRKLTLETIKEFKLGYAPLSNKPLSFRFINFLKKKNINIDKLLEYGFIKEKTNHQGT 232

Query: 198 --SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK-----YLNSPETILFHKGKNLYN 250
              +D F   +I PI +   Q   F      +    +       N  +T  F+     Y 
Sbjct: 233 KYYHDTFHGSIIIPIENGYHQTFHFYQNHFRETSYFQPKYQSLTNFSQTPTFYFS---YR 289

Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQLR 308
           FF AL Y++           +  II+ EG+ DV+S  Q G++NVV  +     L++ Q+ 
Sbjct: 290 FFEALPYIK----------QTKTIIIHEGFFDVISCYQYGIKNVVGLICVTQLLSQVQIE 339

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIRCY 366
           +L   + ++++  D D+ G + +      +  + IP      +       +D D  +R Y
Sbjct: 340 ILKTENIKVIIALDNDETGRKRSEVLGKQLKLNQIPYEIRRILPPYDETCKDVDDLLRQY 399

Query: 367 GKTAFEKLIVESLPLVDM 384
           GKTA++K  ++     + 
Sbjct: 400 GKTAYQKCFLDPYITYEE 417


>gi|225573548|ref|ZP_03782303.1| hypothetical protein RUMHYD_01741 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039090|gb|EEG49336.1| hypothetical protein RUMHYD_01741 [Blautia hydrogenotrophica DSM
           10507]
          Length = 161

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 24/168 (14%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYYCFSC 67
           +++     +  +I +Y           +  + + CPFH  ++  S    D    ++CF C
Sbjct: 4   EEIKERYSMREIIARY------GLYPNRSGFIS-CPFHKGDREASMKIYDKD--FHCFGC 54

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIA-------GVPLPVVDPKIEKKEKIQ-----T 115
              GD  SF+  +   SF E+ Q L            + +     + E ++K +      
Sbjct: 55  GANGDIFSFVQRMEDISFREAFQSLGGTYQSPTFSSQLAIYRAKKRQEMRQKKKEREAQE 114

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAP 163
            L+ + ++    F   LK  +     +      +        +L   P
Sbjct: 115 RLLNIKKIGA--FQEQLKKLQPLSEEWCECYNALQYQLYVHGELNGIP 160


>gi|284989333|ref|YP_003407887.1| TrwC relaxase [Geodermatophilus obscurus DSM 43160]
 gi|284062578|gb|ADB73516.1| TrwC relaxase [Geodermatophilus obscurus DSM 43160]
          Length = 1836

 Score = 84.9 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 95/373 (25%), Positives = 137/373 (36%), Gaps = 30/373 (8%)

Query: 114  QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
            +  LI L   A  FF      +         +  G D  A   F  GYAP    +L +HL
Sbjct: 1460 RDRLIALNTQAAAFFTDRYVTSWAPGYL--RERLGTDLTADPRFSPGYAPAGWTALVDHL 1517

Query: 174  RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--- 230
            R  G +E++++ AGL      +    DRFR+RL FPI   +G V+ F  R          
Sbjct: 1518 RGLGATEDELLAAGLA-QCARTGALIDRFRDRLTFPIHDLQGTVVGFIARRNPTAPHDGP 1576

Query: 231  --VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD--VLSL 286
               KYLN+P T L+ KG++L+    A   L                 LVEG +D   L+L
Sbjct: 1577 AGPKYLNTPGTDLYRKGEHLFGLHEARAALTADATPA----------LVEGPLDALALAL 1626

Query: 287  CQAGVQNVVSSLGTALTEYQLRLLWKLS-----PRIVLCFDGDDPGLRAAYKAIDLVLCH 341
              AG    V++LGTALT+ Q  LL         P I++  D D PG +AA +   +    
Sbjct: 1627 AGAGQTVGVATLGTALTDRQADLLRPYIRGGDGPGILVATDNDPPGRQAAER---IYWQL 1683

Query: 342  LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK-RETENRSFNTPDE 400
               G+    + L  G DP   +   G TA    +  S  L D L   R T      +P +
Sbjct: 1684 TTRGDDPRRLALPDGLDPADLLHRDGPTALRTAVDTSSSLADSLLDARLTPAAHDRSPSD 1743

Query: 401  RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
                       I  +   +   +    + + L                            
Sbjct: 1744 IHTALRDAAAVIVALPPGRWLAH-IDRVTEVLGVPPGTVHRAVLDTEPITAAPRGATTGP 1802

Query: 461  GPSQRLMQSSLVK 473
              + RL   S  +
Sbjct: 1803 QRTSRLTPPSEDR 1815


>gi|291529692|emb|CBK95278.1| DNA primase (bacterial type) [Eubacterium rectale M104/1]
          Length = 490

 Score = 84.9 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 65/457 (14%), Positives = 125/457 (27%), Gaps = 53/457 (11%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKT-PSFHCNDSKGFY 62
           RD  +++   + +S ++  + V  +         +  A CPFH + T  SF  ND KG  
Sbjct: 23  RDIAEEVRG-LRLSEVLEHHGVHIE----IDTGSEKKALCPFHMDNTIGSFSINDDKGIC 77

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLA----------------AIA------GVPL 100
            CF+C   GD +  +  L   S+ +++ +LA                         G+  
Sbjct: 78  KCFACGGGGDAIHSMMQLNNMSYKDALLQLAADEQIISKEKFKELSQREYSDEFIKGMEG 137

Query: 101 PVVDPKIEKK--------EKIQTDLIRLIEVATDF---FHHSLKNARDKRLHYYLDERGI 149
           P       KK        +K +  + ++I+            L+  R         +   
Sbjct: 138 PAEKMFSVKKSKVIESGEQKRRNAVYQIIKDVCGLKKEHEKYLREKRALSDARIKKDYFS 197

Query: 150 DSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFP 209
            S+      +    +      + L+        I       +       Y    + +   
Sbjct: 198 ISNGKLTKVIKAVREQCPEYLDDLQTLPGFFTNIDYEFRGNEKVKKEKLYWSVSDGIGIL 257

Query: 210 IRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRN 269
           IR +   + A   R     E         +       N Y   G        +    R  
Sbjct: 258 IRDAYDNIKAIQIRRDHIEEDEFRYVWFSSAFAMARGNKYTKGGGAVGAPIDVLFPQREK 317

Query: 270 SSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK-------LSPRIVLCFD 322
            ++ + + EG      L Q G    +S  G          +             I + +D
Sbjct: 318 PNTTLCVAEGRFKTEILSQWG-NVALSVQGVGNYSGIDDDIKNVIDVTGKKFDNIFVFYD 376

Query: 323 GDDPGLRAAYKAI-----DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            D     A +         L         +        G+  D           +    +
Sbjct: 377 ADMLRNSAVFAQAMKLGQYLNQTMPELTVKYCIWPEYLGKGIDDMYLSNPDNVSQIRTFD 436

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              L+D+  K   E  +       A+ +   +    +
Sbjct: 437 EKYLMDIWSKEVLEIFAKLGIQSVAKTDKETREKFAN 473


>gi|240145576|ref|ZP_04744177.1| DNA primase [Roseburia intestinalis L1-82]
 gi|257202390|gb|EEV00675.1| DNA primase [Roseburia intestinalis L1-82]
          Length = 166

 Score = 84.9 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 20/147 (13%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYYCF 65
            + ++     + +++  Y        +  +  +   CPFH  + T S         Y CF
Sbjct: 2   TVDEIKQSHSMCDIVESY------GFHPNRAGFV-PCPFHTGDHTASMKIYKDS--YNCF 52

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIA-------GVPLPVVDPKIEKKEKIQTDL- 117
            C   GD  SF+  +  C F  +   L            + +  +    EK+++ +  L 
Sbjct: 53  GCGANGDIFSFVQGMEHCDFKTAFYSLGGTYEKPTKASEMTIYHMQKAKEKRKREEESLK 112

Query: 118 --IRLIEVATDFFHHSLKNARDKRLHY 142
             I L       +   LK +      +
Sbjct: 113 RKIDLNNQLIGIYVTWLKKSEPLSDVW 139


>gi|186471868|ref|YP_001863186.1| zinc finger CHC2-family protein [Burkholderia phymatum STM815]
 gi|184198177|gb|ACC76140.1| zinc finger CHC2-family protein [Burkholderia phymatum STM815]
          Length = 71

 Score = 84.9 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 14 HIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEK--TPSFHCNDSKGFYYCFSCHVKG 71
             I  ++ Q+V   +         YW  CPFHDE+  T  F  N++   +YCF C   G
Sbjct: 2  ASDIIAVVSQFVSLQK-----GLRAYWGRCPFHDERGMT-HFSVNEATQRFYCFGCGRGG 55

Query: 72 DHLSFLSALL 81
              FL  + 
Sbjct: 56 SVDDFLRYIE 65


>gi|212702854|ref|ZP_03310982.1| hypothetical protein DESPIG_00886 [Desulfovibrio piger ATCC 29098]
 gi|212673716|gb|EEB34199.1| hypothetical protein DESPIG_00886 [Desulfovibrio piger ATCC 29098]
          Length = 496

 Score = 84.9 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 107/373 (28%), Gaps = 55/373 (14%)

Query: 17  ISNLIGQYVDWDRRK-TNAVKGDYWACCPFHDEKTPSFHCND---SKGFYYCFSCHVKGD 72
           I +LI         K      G++   CP    K   F         G +YC  C   GD
Sbjct: 13  IESLIQDR-GLKAVKVAGTHGGEWACPCPACGGKD-RFRFWPAQGEGGTWYCRQCDKGGD 70

Query: 73  HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR-----------LI 121
            + FL    G S+ E+ +RL    GV        I  +   +                  
Sbjct: 71  SIQFLREFEGLSYTEACRRL----GVERAAAPTSIMPRADKEERPWEPSPTPADPGPVWQ 126

Query: 122 EVATD---FFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
           E A     + H  L    D+    +L  RGI   A+E F+LG+ P        H  +  +
Sbjct: 127 EHAAKLLDYAHAKLLADEDR--MMWLAMRGIFPDAVERFRLGWLPGENGKDCYHRDRGAW 184

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
                  A                   L+ P  +  G V     R   +           
Sbjct: 185 GLPPETNARGRKKS-------LWIPAGLVVPALTEDGAVRRLRIRRTDEARERFGAEMKY 237

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
            ++                   S+R  + R  +   ++VE  +D ++   A +   +   
Sbjct: 238 VVV----------------PGSSMRPLLLRPEARAFVVVEAELDAMACVAAAMDAGLDVG 281

Query: 299 GTALTEYQLRL------LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
             A      R       + + +  I++  D D P  +        +              
Sbjct: 282 AFAAGTNMGRPDAAAHAVLRRALCILVALDFDQPDEKGQRAGAKGMPFWARTYRTARRWP 341

Query: 353 LSRGEDPDSFIRC 365
           + +G+DP    R 
Sbjct: 342 VPKGKDPGDAFRE 354


>gi|218132802|ref|ZP_03461606.1| hypothetical protein BACPEC_00663 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992528|gb|EEC58531.1| hypothetical protein BACPEC_00663 [Bacteroides pectinophilus ATCC
           43243]
          Length = 233

 Score = 84.9 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 18/154 (11%)

Query: 31  KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQ 90
             N       ACCPFHD+K PS   +     ++CF C   GD + F + L G S  E+  
Sbjct: 44  GRNG-----MACCPFHDDKHPSMKIDR---RFHCFGCQADGDVIDFTARLFGLSSKEAAL 95

Query: 91  RLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGID 150
           +LA    V          ++  ++  +   +      +  +     +++    L +    
Sbjct: 96  KLAEDFSVSYDAKGHDPPRRRPVKRKISEELR-----YRQA-----EQKCFRVLCDYLHL 145

Query: 151 SHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
               E       PD  ++       +  S  + +
Sbjct: 146 LEHWEQEYAPQNPDEAWNPLFVEALQKKSYTEYL 179


>gi|253580540|ref|ZP_04857805.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848270|gb|EES76235.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
 gi|295108930|emb|CBL22883.1| DNA primase (bacterial type) [Ruminococcus obeum A2-162]
          Length = 234

 Score = 84.6 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 12/149 (8%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            A CPFH +K PS   +     ++CF C   GD + F + L      E+ ++LA    + 
Sbjct: 29  MAVCPFHRDKNPSMKVDR---RFHCFGCQADGDVIDFTAHLYNLKPKEAAEKLARDFSIH 85

Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159
              +     ++++I+  L +               A ++      D   +     E    
Sbjct: 86  YENMGHSPPQRKQIKRQLTQ---------EQRYLQAENRYFRALADYLHLLKQWKEECAP 136

Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
               D  + L     +K    E +++  L
Sbjct: 137 KQVEDVWHPLFMEALEKISETEYLLDTLL 165


>gi|218132427|ref|ZP_03461231.1| hypothetical protein BACPEC_00286 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992765|gb|EEC58767.1| hypothetical protein BACPEC_00286 [Bacteroides pectinophilus ATCC
           43243]
          Length = 253

 Score = 84.6 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 11  LLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69
           +   I +      Y +  +R           ACCPFH+++ PS   N+   +++CF C  
Sbjct: 13  IKAAISVKQAAEHYGLKVNRNG--------MACCPFHNDRHPSLKLNED--YFFCFGCGA 62

Query: 70  KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI 113
           KGD +  ++ L   S  E+ Q+LA+  G+           K K 
Sbjct: 63  KGDVIDLVARLFNMSSYEAAQKLASDFGLDPKPPTAAAMAKPKR 106


>gi|295092259|emb|CBK78366.1| DNA primase (bacterial type) [Clostridium cf. saccharolyticum K10]
          Length = 206

 Score = 84.6 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 7/92 (7%)

Query: 16  PISNLIGQYVDWDRR----KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
            +   +   V   +          +GD   CCPFHD++ PS   N    ++YCF C V G
Sbjct: 2   NLFETVKSAVTVKQAAEYYGCKVNRGDMI-CCPFHDDRHPSMKLNRD--YFYCFGCGVTG 58

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGVPLPVV 103
           D + F++ L G S  E+ ++LA   G+     
Sbjct: 59  DVIDFVARLFGLSSYEAAKKLAYDFGIDPDKP 90


>gi|119952478|ref|YP_949958.1| TOPRIM domain-containing protein [Arthrobacter aurescens TC1]
 gi|119951608|gb|ABM10518.1| Toprim domain [Arthrobacter aurescens TC1]
          Length = 2109

 Score = 84.6 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 76/321 (23%), Positives = 120/321 (37%), Gaps = 36/321 (11%)

Query: 115  TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
              +  L + A  +F      +         +  G D      + +GYAP    SL  HL 
Sbjct: 1704 ERIHELNKQALAYFESCYPRSWAPGYL--RERLGTDLTDYPAYSVGYAPGGGRSLLRHLT 1761

Query: 175  QKGFSEEKIIEAGLLIDGDNSAT---SYDRFRNRLIFPIRSSRG----QVIAFGGRTLSK 227
             +G + +++ +AGL+   + +       D FR+RL+ PIR         ++ F GR    
Sbjct: 1762 DQGATLDELEQAGLISKRERNDGTSYYRDFFRDRLVMPIRDPHDPTGEAILGFVGRRNPT 1821

Query: 228  GES-----VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD 282
                     KYLN+  T +F KG+ L+ +  A   L             +  ++VEG MD
Sbjct: 1822 KTDDDYAGPKYLNTRTTPIFTKGEALFGYTEARELLA----------GGALPVIVEGPMD 1871

Query: 283  VLS--LCQAGVQNVVSSLGTALTEYQLRLLWKL------SPRIVLCFDGDDPGLRAAYKA 334
             L+  L   G    ++ +GTALT  Q++LL           RI +  D D  G  +A KA
Sbjct: 1872 ALAITLGSNGAAVGIAPMGTALTVNQIKLLRSHIDLVNGRDRIAVATDSDPAGWNSAQKA 1931

Query: 335  IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR- 393
                            + L  G DP + +   G  A    I    PL D +         
Sbjct: 1932 F---WHLTAADLDPTHLDLPDGLDPANLLETQGADAIAAAIENRSPLGDAMIDHLLRTAG 1988

Query: 394  SFNTPDERAELEIHLKNCINH 414
             ++  D R +L       +  
Sbjct: 1989 HWSDTDVRQKLIHQTARILGS 2009


>gi|119952294|ref|YP_949965.1| TOPRIM domain-containing protein [Arthrobacter aurescens TC1]
 gi|119951424|gb|ABM10334.1| Toprim domain protein [Arthrobacter aurescens TC1]
          Length = 1708

 Score = 84.6 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 76/321 (23%), Positives = 120/321 (37%), Gaps = 36/321 (11%)

Query: 115  TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
              +  L + A  +F      +         +  G D      + +GYAP    SL  HL 
Sbjct: 1303 ERIHELNKQALAYFESCYPRSWAPGYL--RERLGTDLTDYPAYSVGYAPGGGRSLLRHLT 1360

Query: 175  QKGFSEEKIIEAGLLIDGDNSAT---SYDRFRNRLIFPIRSSRG----QVIAFGGRTLSK 227
             +G + +++ +AGL+   + +       D FR+RL+ PIR         ++ F GR    
Sbjct: 1361 DQGATLDELEQAGLISKRERNDGTSYYRDFFRDRLVMPIRDPHDPTGEAILGFVGRRNPT 1420

Query: 228  GES-----VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD 282
                     KYLN+  T +F KG+ L+ +  A   L             +  ++VEG MD
Sbjct: 1421 KTDDDYAGPKYLNTRTTPIFTKGEALFGYTEARELLA----------GGALPVIVEGPMD 1470

Query: 283  VLS--LCQAGVQNVVSSLGTALTEYQLRLLWKL------SPRIVLCFDGDDPGLRAAYKA 334
             L+  L   G    ++ +GTALT  Q++LL           RI +  D D  G  +A KA
Sbjct: 1471 ALAITLGSNGAAVGIAPMGTALTVNQIKLLRSHIDLVNGRDRIAVATDSDPAGWNSAQKA 1530

Query: 335  IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR- 393
                            + L  G DP + +   G  A    I    PL D +         
Sbjct: 1531 F---WHLTAADLDPTHLDLPDGLDPANLLETQGADAIAAAIENRSPLGDAMIDHLLRTAG 1587

Query: 394  SFNTPDERAELEIHLKNCINH 414
             ++  D R +L       +  
Sbjct: 1588 HWSDTDVRQKLIHQTARILGS 1608


>gi|42558837|gb|AAS20177.1| TraA-like protein [Arthrobacter aurescens]
          Length = 1554

 Score = 84.6 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 76/321 (23%), Positives = 120/321 (37%), Gaps = 36/321 (11%)

Query: 115  TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
              +  L + A  +F      +         +  G D      + +GYAP    SL  HL 
Sbjct: 1149 ERIHELNKQALAYFESCYPRSWAPGYL--RERLGTDLTDYPAYSVGYAPGGGRSLLRHLT 1206

Query: 175  QKGFSEEKIIEAGLLIDGDNSAT---SYDRFRNRLIFPIRSSRG----QVIAFGGRTLSK 227
             +G + +++ +AGL+   + +       D FR+RL+ PIR         ++ F GR    
Sbjct: 1207 DQGATLDELEQAGLISKRERNDGTSYYRDFFRDRLVMPIRDPHDPTGEAILGFVGRRNPT 1266

Query: 228  GES-----VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD 282
                     KYLN+  T +F KG+ L+ +  A   L             +  ++VEG MD
Sbjct: 1267 KTDDDYAGPKYLNTRTTPIFTKGEALFGYTEARELLA----------GGALPVIVEGPMD 1316

Query: 283  VLS--LCQAGVQNVVSSLGTALTEYQLRLLWKL------SPRIVLCFDGDDPGLRAAYKA 334
             L+  L   G    ++ +GTALT  Q++LL           RI +  D D  G  +A KA
Sbjct: 1317 ALAITLGSNGAAVGIAPMGTALTVNQIKLLRSHIDLVNGRDRIAVATDSDPAGWNSAQKA 1376

Query: 335  IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR- 393
                            + L  G DP + +   G  A    I    PL D +         
Sbjct: 1377 F---WHLTAADLDPTHLDLPDGLDPANLLETQGADAIAAAIENRSPLGDAMIDHLLRTAG 1433

Query: 394  SFNTPDERAELEIHLKNCINH 414
             ++  D R +L       +  
Sbjct: 1434 HWSDTDVRQKLIHQTARILGS 1454


>gi|255524775|ref|ZP_05391726.1| zinc finger CHC2-family protein [Clostridium carboxidivorans P7]
 gi|296185004|ref|ZP_06853415.1| CHC2 zinc finger domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255511548|gb|EET87837.1| zinc finger CHC2-family protein [Clostridium carboxidivorans P7]
 gi|296050786|gb|EFG90209.1| CHC2 zinc finger domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 203

 Score = 84.6 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 11/126 (8%)

Query: 6   DFIKDLLIHIPISNLIGQYVD--WDR-RKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ +  ++ I   + +Y      + R            CPFH EKT SF  +     +
Sbjct: 2   QLVEQIKDNLDILTALQKYTTADLSKLRGKKGNI-----LCPFHHEKTGSFLVDTINNTW 56

Query: 63  YCFS-CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           +CF  C   GD ++  +   G S  +S++ LA+  G  L   + K+ KK KI     +  
Sbjct: 57  HCFGSCATGGDVITLYAFSNGISNKDSIKLLASDLG--LKQENKKLSKKVKIDFIKKKTE 114

Query: 122 EVATDF 127
           + A +F
Sbjct: 115 KEALNF 120


>gi|291517916|emb|CBK73137.1| DNA primase (bacterial type) [Butyrivibrio fibrisolvens 16/4]
          Length = 140

 Score = 84.6 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 8/120 (6%)

Query: 11  LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
           L   + +      Y           K     CC FH++K PS   N  K ++YCFSC   
Sbjct: 7   LKQAVSLEEAASFY------GIFYDKRSKKCCCLFHNDKHPSMKLN--KEYFYCFSCGAH 58

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
           GD ++ +  + G S IES Q++     +       K     K +   I   +     FH 
Sbjct: 59  GDVINLVQQIYGLSAIESAQKICNDFNLNGSTDTCKSPSIIKQRQQEIEHRKALERAFHQ 118


>gi|85057565|ref|YP_456481.1| DNA primase [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789670|gb|ABC65402.1| DNA primase [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 441

 Score = 84.2 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 85/440 (19%), Positives = 163/440 (37%), Gaps = 78/440 (17%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVK--GDYWACCPFHDEKTPSF-HCND 57
           MNY ++ IK +  + P++      V   +           Y   CP H  + P+  H   
Sbjct: 1   MNY-QEKIKHIQTNFPMT------VLLKKLNIIPTNFNTKYRFPCPIHQGQNPTCCHLTS 53

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRL------------------------ 92
                +C+ C    D +     + G  +F  +++++                        
Sbjct: 54  DNKI-HCWKCCKDYDIIDVYMEIRGIKTFNNALEKINNFMKNQEFKNLIQQQTSTPNISC 112

Query: 93  --------AAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLH--- 141
                         P+   +     K ++  ++  L     D++H+ L   R+   H   
Sbjct: 113 EPFKYQFHHNKINNPIDEKEINAT-KTQLFKEISPLFNQIRDYYHYLLTTNRNNESHLGL 171

Query: 142 -YYLDERGIDSHAIEMFKLGYAPDS----RYSLREHLRQKGFSEEKIIEAGLLIDGDNSA 196
            Y   +R +    I+ FKLGYAP S     + L  + +++     K+IE G + D  N  
Sbjct: 172 EYLTQKRKLTLETIKEFKLGYAPLSDKPLSFRLVNYCKKQNIDTTKLIEYGFIKDKTNQQ 231

Query: 197 T---SYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLNSPETILFHKGKNL 248
                +D F   +I PI +   +   F           + +     N  +T  FH     
Sbjct: 232 NKTYYHDTFHGSIIIPIENGYNKTFHFYQNNFREVSYFQPKYKSLNNFSQTPTFHFS--- 288

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQ 306
           Y FF AL  ++           +  II+ EG+ DV+S  Q  ++NVV  +     L++ Q
Sbjct: 289 YRFFEALPSIK----------QTKTIIIHEGFFDVISCWQNNIKNVVGLICVTQLLSKSQ 338

Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIR 364
           + +L K + ++++  D D+ G + +    + +    I       +       +D D  +R
Sbjct: 339 IEILKKENIKVIIALDNDETGQKRSEALGEQLKEENIIYEIRRILPPYDKTCKDVDDLLR 398

Query: 365 CYGKTAFEKLIVESLPLVDM 384
            +GK A++K  ++     + 
Sbjct: 399 QFGKEAYQKCFLDPYITYEE 418


>gi|167771871|ref|ZP_02443924.1| hypothetical protein ANACOL_03244 [Anaerotruncus colihominis DSM
           17241]
 gi|167665669|gb|EDS09799.1| hypothetical protein ANACOL_03244 [Anaerotruncus colihominis DSM
           17241]
          Length = 209

 Score = 84.2 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 16  PISNLIGQYVDWDRRKT--NAVKGDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72
            I  ++ + V+              Y  A CPFH+++ PS +  D    YYCF+C   GD
Sbjct: 2   RIFEIVKENVNLREAAELYEIDVNRYGKALCPFHNDRHPSLYVADDH--YYCFACGEHGD 59

Query: 73  HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIRLIE 122
            + F+  L   S  ++ ++L A   +           + K  +T+  +L+E
Sbjct: 60  VIDFVGRLFQLSPYDAARKLMADFHLAPDKPPSAAAIQAKRIRTEAQQLME 110


>gi|207743819|ref|YP_002260211.1| dna primase protein (partial sequence c terminus) [Ralstonia
           solanacearum IPO1609]
 gi|206595219|emb|CAQ62146.1| dna primase protein (partial sequence c terminus) [Ralstonia
           solanacearum IPO1609]
          Length = 320

 Score = 84.2 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 128/343 (37%), Gaps = 29/343 (8%)

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
             N V++LGTA T   ++ L +    ++  FDGD  G RAA +A++  L H+     V F
Sbjct: 1   FANAVATLGTACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKVVKF 60

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           + L    DPD+FIR  G  AF   +  ++PL   L +  +E+     P+ RA  +   K 
Sbjct: 61  LFLPPEHDPDTFIREEGTEAFAAEVRNAMPLSRFLLQAVSEDLDLRQPEGRARAQYEAKP 120

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +    LR    + + +         I    G      +  R   ++    R   ++
Sbjct: 121 LLSAMPPGGLRLQIVRGLAEMTG-TTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTA 179

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFV 527
           L            E  +L  L+ +PA+           +    EL   + L   L     
Sbjct: 180 L------------EQKVLRLLMRYPALAAR-LDADTRAQLTAPELPQGEVLSGLLTECDA 226

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                      +RL +  + E    L   V D  +     E    +     Q+ LA    
Sbjct: 227 VGPEMHFGAFVERLGQTPYAEAFAGLRVAVLDDDIEL---EPATQEFDAAVQKMLA---- 279

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629
              L R+ + +++++ +     +A+K    +  L  E+  +  
Sbjct: 280 -EPLRRELDMLQRKM-EGGHASDADK--ERLRWLVSEISRRRR 318


>gi|302876362|ref|YP_003844995.1| Sigma 54 interacting domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302579219|gb|ADL53231.1| Sigma 54 interacting domain protein [Clostridium cellulovorans
           743B]
          Length = 868

 Score = 84.2 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 14/104 (13%)

Query: 15  IPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC----NDSKGFYYCFSCHVK 70
           I + +LI              +  +   CPFH EKTPS       + +K  + C+ C  +
Sbjct: 6   IDLKDLIE-----KETGERFNREGFT-KCPFHKEKTPSLSVKFFPDKNKQKFKCWGCEEQ 59

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114
           GD + F++ L    + E+ + L    G+     + ++++    +
Sbjct: 60  GDAIDFITKLKNLGYKEAREYL----GMENIKTEKELQEDNIKK 99


>gi|295105017|emb|CBL02561.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii SL3/3]
          Length = 205

 Score = 83.8 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
           CCPFHD++ PS   N+   ++YCF C  KGD + F++ LL  S  E+ QRLAA  G+  P
Sbjct: 31  CCPFHDDRHPSLKLNED--YFYCFGCGAKGDVIDFVARLLDLSAYEAAQRLAADFGLDRP 88

Query: 102 VVDPKIEKKEKIQ 114
                  KK + +
Sbjct: 89  PSVVAQVKKYRPR 101


>gi|322374451|ref|ZP_08048965.1| DNA primase [Streptococcus sp. C300]
 gi|321279951|gb|EFX56990.1| DNA primase [Streptococcus sp. C300]
          Length = 250

 Score = 83.8 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 89/273 (32%), Gaps = 23/273 (8%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            DPD +++         L+ ++       +  + +  + +    + E    +   I   K
Sbjct: 1   MDPDEYLQKNSAEDLAYLLTKTRISPIEFYIHQLKPENSDNLQAQIEFIEKIAPLIAKEK 60

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               +  Y   + D L     + + +     R  ++  R ++++ P+      SL   + 
Sbjct: 61  SITAQNSYIHILADNLPSFDYQQVEQIVNESRIVQRQERVKEEQPPA----AISLPVTRQ 116

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  EA LL  +  +P +L +  +   D  +D  E Q L+  L              
Sbjct: 117 LTAVMRAEAHLLYRMAENPVVLNDY-RLREDFFFDTPEFQILYELLSEQGE--------- 166

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
               +          +++             E +  ++ +     +   +   LLS+   
Sbjct: 167 ----IGSEELSHQTPEVENAWYHVLSLDLPAEMSPQELAE-----VEATRNRALLSKDNL 217

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            I+K++ + +  G+ +     +  L     ++ 
Sbjct: 218 RIKKKVQEASHVGDTDTALEELQRLISQKRRME 250


>gi|39939058|ref|NP_950824.1| DNA primase [Onion yellows phytoplasma OY-M]
 gi|39722167|dbj|BAD04657.1| DNA primase [Onion yellows phytoplasma OY-M]
          Length = 441

 Score = 83.8 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 93/429 (21%), Positives = 157/429 (36%), Gaps = 74/429 (17%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVK--GDYWACCPFHDEKTPSFHCNDS 58
           MNY +D IK +  H P+S      V   +           Y   CP H    P+     S
Sbjct: 1   MNY-QDKIKHIQTHFPMS------VLLKKLNIIPSNFNPKYRFPCPLHQGNNPTCCHFTS 53

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQR------------LAAI---------- 95
               +C+ C    D +     +    SF E++QR            L+            
Sbjct: 54  TNKIHCWKCVRDYDIIDVYMTIRQIKSFYEAIQRIEGFMNSFEFKTLSQQEKEITKIITN 113

Query: 96  -----AGVPLPVVDPKIEKKEKIQTDLIR----LIEVATDFFHHSLKNARDKRLH----Y 142
                     P      ++    +  L +    L     D++H+ L + R+        Y
Sbjct: 114 PFPQPYHPMKPKQPVDEQEINIKKKQLFKDISPLFNQIRDYYHYLLISNRNNESQPGLTY 173

Query: 143 YLDERGIDSHAIEMFKLGYAPDS----RYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT- 197
              +R +    I+ F+LGYAP S     + L  + ++K     K++E G + +  N    
Sbjct: 174 LTQKRKLTLETIKEFQLGYAPLSDKPLSFRLVNYCQKKNIDTTKLVEYGFIKEKTNQQNK 233

Query: 198 --SYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLNSPETILFHKGKNLYN 250
              +D F   +I PI +   Q   F           + +     N  +T  FH     Y 
Sbjct: 234 KYYHDTFHGSIIIPIENGYHQTFHFYQNHFREVSYFQPKYQALTNFSQTPTFHFS---YR 290

Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQLR 308
           FF AL Y++           +  II+ EG+ DV+S  Q  ++NVV  +     L++ QL 
Sbjct: 291 FFEALPYIK----------QTKTIIIHEGFFDVISCWQNNIKNVVGLICVTQLLSQSQLE 340

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAID--LVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
           +L K   ++++  D D+ G + +    +       L     +        +D D  +R Y
Sbjct: 341 ILKKEKIKVIIALDNDETGRKRSEALGEQLKETNILYEIRHILPPYNQTCKDVDDLLRQY 400

Query: 367 GKTAFEKLI 375
           GK A++K  
Sbjct: 401 GKEAYQKCF 409


>gi|293400201|ref|ZP_06644347.1| DNA primase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306601|gb|EFE47844.1| DNA primase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 209

 Score = 83.8 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            A CPFH+++ PS +  D    YYCF+C   GD + F + L G    E+ QRLAA   + 
Sbjct: 29  MALCPFHNDRHPSLYVADDH--YYCFACGEHGDVIDFAARLFGLPLYEAAQRLAADFHLT 86

Query: 100 LPVVDPKIEKKEKI 113
                       K 
Sbjct: 87  PDKPPSAAALHAKR 100


>gi|325954494|ref|YP_004238154.1| TOPRIM domain-containing protein [Weeksella virosa DSM 16922]
 gi|323437112|gb|ADX67576.1| TOPRIM domain-containing protein [Weeksella virosa DSM 16922]
          Length = 381

 Score = 83.8 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 53/368 (14%), Positives = 113/368 (30%), Gaps = 50/368 (13%)

Query: 33  NAVKGDYWAC---------CPFHDEKTPSFHCNDSKGFYYCFS--C---HVKGDHLSFLS 78
           N  +  Y+           CPFH++KTPS          YCFS  C       D + F+ 
Sbjct: 37  NGKRTHYYGLKTDKQSRISCPFHEDKTPSMQVYYKTQTAYCFSSNCKTNGKSMDVIDFIM 96

Query: 79  ALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDK 138
                +  +++ +   I G   P    + + +   +  L  + +     +  +  +    
Sbjct: 97  HKENSTKAQAINKAKEIVGYQKPDSKERYQPELTREQFLGNMYQ-----YFKNAVSNSKP 151

Query: 139 RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS 198
              Y              +  G            + Q       I +  L   G+ +   
Sbjct: 152 AKDYLQQRNLDFKKTEIGYNAGQFHHGARKDENVIAQCLEYGLLIDKNILGRTGEKAYGV 211

Query: 199 YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYL 258
           + ++   + F +++   +V     R+         LN  E+  F+               
Sbjct: 212 FGKW--CICFALKNKENEVTGLYFRS--------TLNDKESKHFYLKN------------ 249

Query: 259 QKSIRKDVRRNSSSFIILVEGYMDVLSL-----CQAGVQNVVSSLGTALTEYQLRLLW-- 311
           ++ +  +    ++  +IL E  +D  SL            +       LTE   + +   
Sbjct: 250 RQGLYPNYPDKNTKKLILTESIIDGASLLQIKEIADNYSVLACYGTNGLTEEHQQAIKDL 309

Query: 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371
                I+  FD D  G  A  K   ++              +   +D +  ++ + ++ F
Sbjct: 310 PQLEEIIFFFDNDTAGKEAVKKYGAMLKAEYPKLKLTTAEPI--NKDINETLQGHDESIF 367

Query: 372 EKLIVESL 379
            +L+    
Sbjct: 368 IELLNNRT 375


>gi|302873087|ref|YP_003841720.1| Sigma 54 interacting domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307688755|ref|ZP_07631201.1| Sigma 54 interacting domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302575944|gb|ADL49956.1| Sigma 54 interacting domain protein [Clostridium cellulovorans
           743B]
          Length = 852

 Score = 83.8 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 42  CCPFHDEKTPSFHC----NDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97
           CCPFH EKTPS       + +K  + C+ C  +GD L F+       +  + + L    G
Sbjct: 27  CCPFHKEKTPSLSVKFFPDRNKQRFMCWGCTEQGDALDFIMKYRNLDYKAARKYL----G 82

Query: 98  VPLPVVDPKIEKK 110
           +     + +++++
Sbjct: 83  MENKKSENQLQEE 95


>gi|325662742|ref|ZP_08151336.1| hypothetical protein HMPREF0490_02076 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470979|gb|EGC74207.1| hypothetical protein HMPREF0490_02076 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 217

 Score = 83.4 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
           CCPFHD++ PS      KGF  CF+C  KGD ++F++       +E+ ++LA    +P+ 
Sbjct: 31  CCPFHDDRHPSMKV--DKGFC-CFACGAKGDVITFVADFFHIVPLEAAKKLAEDFRIPIF 87

Query: 102 VVDPK----IEKKEKIQTDLIRLIEVATDF 127
               K     +KKEK +  L +  +   ++
Sbjct: 88  TDSSKKRNTSKKKEKPKRTLYQTEKKFEEW 117


>gi|320104081|ref|YP_004179672.1| hypothetical protein Isop_2552 [Isosphaera pallida ATCC 43644]
 gi|319751363|gb|ADV63123.1| hypothetical protein Isop_2552 [Isosphaera pallida ATCC 43644]
          Length = 631

 Score = 83.4 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/407 (13%), Positives = 119/407 (29%), Gaps = 52/407 (12%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHD---EKTPSFHCNDSKGF 61
           R+ +++    +    ++ + +    R +          CP       +TP       +  
Sbjct: 10  RERLEEWKTRLD-CRVVARSLGLAGRGSRWF-------CPSCQPGGGRTPDLAAEAER-- 59

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV----------------DP 105
           + CF C   GD ++ +    G  F ++V+ L      PL                     
Sbjct: 60  FRCFKCGAGGDVIALVRLATGLDFAQAVEWLEQRFAAPLERERNGPKGTRSLTRPTIRTN 119

Query: 106 KIEKKEKIQTDLIRLIEVAT-----DFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKL 159
           +   +E+ + +    ++++      + F    ++         +L ER I   A    ++
Sbjct: 120 RPSLRERARAEASNAVDLSARAMVFERFRAGCRDPRPGDPAWTFLVERSIHPEAFRRLRV 179

Query: 160 GYAPDSRY-SLREHLRQKGFSEEKIIEAGLLIDGDNS--------ATSYDRFRNRLIFPI 210
           G+  +    +       + + E  +I AGL   G              Y      ++   
Sbjct: 180 GWLANGGELADLMARLTREWDEPTLIRAGLWRLGRTRTPRTGGPVFRPYGHLDRPILVLP 239

Query: 211 RSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS 270
               G+++    R L      +    P         ++   + A       +R+      
Sbjct: 240 YPWNGRLVHLKVRALIDSSEAEAQGIP--RFLSAAGSIPCPYHA----DALVREPTEETR 293

Query: 271 SSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRA 330
              + + EG  D L+    G + +     +      +  +      + L  DGD+ G R 
Sbjct: 294 RGTLWICEGETDTLAALSRGWRAIGVPGWSGFKAGWIARIKGTFRAVRLAMDGDEAGARG 353

Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
           A                   +    G D    +R     A   L+  
Sbjct: 354 AADIAAKFRR--AGAPAPRLLPPRPGHDLGDRLRAPNAEALRALLDR 398


>gi|237749745|ref|ZP_04580225.1| predicted protein [Helicobacter bilis ATCC 43879]
 gi|229374674|gb|EEO25065.1| predicted protein [Helicobacter bilis ATCC 43879]
          Length = 60

 Score = 83.4 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 45 FHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
          FH E   SF  N  K  +YCF C   GD +     +   +FI+++  L+ +A
Sbjct: 9  FHVENKASFTINPQKNLWYCFGCGNGGDTIKLYMKIKDVNFIKAIDELSRLA 60


>gi|160914404|ref|ZP_02076619.1| hypothetical protein EUBDOL_00408 [Eubacterium dolichum DSM 3991]
 gi|158433562|gb|EDP11851.1| hypothetical protein EUBDOL_00408 [Eubacterium dolichum DSM 3991]
          Length = 179

 Score = 83.4 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 16/94 (17%)

Query: 16  PISNLIGQYVDWDRR--------KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
            +  ++ Q V   +           N       ACCPFH +KTPS   +     Y+CF C
Sbjct: 2   NVFEVVKQSVTTRQAAEHYGIHAGRNG-----MACCPFHHDKTPSMKLDR---RYHCFGC 53

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
              GD + F +AL G    E+  +LA   G+   
Sbjct: 54  GADGDVIDFAAALYGLGKKEAAVQLAQDFGISYE 87


>gi|291530655|emb|CBK96240.1| DNA primase (bacterial type) [Eubacterium siraeum 70/3]
          Length = 227

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH++KTPS   +     ++CF C    D + F++AL G    E+  +LA+  G+ 
Sbjct: 42  MACCPFHNDKTPSMKLDK---RFHCFGCGADADVIDFVAALYGLGKKEAAAQLASDFGLA 98

Query: 100 LPVVDP--KIEKKEKIQTDLIRLIEVATDFFHHSL 132
                P  +  K +  Q         A       L
Sbjct: 99  YEDWKPPGRARKPKPRQKSPEEQFREAKAHCFRVL 133


>gi|261414853|ref|YP_003248536.1| zinc finger CHC2-family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371309|gb|ACX74054.1| zinc finger CHC2-family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325858|gb|ADL25059.1| putative DNA primase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 627

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 78/535 (14%), Positives = 164/535 (30%), Gaps = 73/535 (13%)

Query: 25  VDWDRRKTNAVKGDYWACCPFHD-EKTPSFHCNDSKGF--YYCFSCHVKGDHLSFLSA-- 79
           +   R   N       ACCPFH  E+T S    D+ G+  Y C  C  +GD + FL    
Sbjct: 22  IPLSRWGRNL-----IACCPFHAPEET-SLFFYDALGYWRYRCLQCGAEGDLVDFLMKSR 75

Query: 80  LLGCS----FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135
             G        E+ + L A+    +   D +    +++  +  +++E    + H      
Sbjct: 76  FNGVDEQTARSEAFEFLGALDKDLVNNQDSEHPWVKEVGGEKSKVLECFVRYCH--WAAC 133

Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195
           +      +L+ RG      +++ LGY          +    G    +I      ++  + 
Sbjct: 134 KSPSSAKFLEARGWSIGQAQLYGLGYYSGDPEPFISYCMLSGIERHQISFYLDNLEAYHE 193

Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255
                     +  P R+S+G + +  GR +   E      +  +         +N     
Sbjct: 194 PR--------ITIPARNSKGFIHSVYGRLIDDNEKSHTYITYASG---PTVIPFNI---- 238

Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315
                       +  S   I+V+G+ D L+   AG+  VVS++   L    L  L     
Sbjct: 239 ------------QADSENPIIVQGFFDALTADLAGIPGVVSTMFQELNVNHLYKLKACGA 286

Query: 316 R---IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED-------PDSFIRC 365
               ++L  + D        +    +   +    +   +      D        D  I  
Sbjct: 287 ESFTVILRREEDRRNQELKIQKYLKLAEQMHMSLKSIVLPKDESVDTFVRKNGADQLIDL 346

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK------ 419
              T  + +      ++    K   +      PD+    ++     +    D        
Sbjct: 347 IANTEVDTIHSHRRSMLLQDIKENFDTAMACPPDQSVGYKLSTFPKLTKEIDGVQSGCFF 406

Query: 420 -------LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
                  L+ +   ++   L +        +  Y    ++           + ++     
Sbjct: 407 VSSQPFGLKTFLLSSLTLDLIESNPNLKVIYVAYETPRRQIFDRFVSMLIGESILNVRKQ 466

Query: 473 KGKLSKKPSLRE--AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                    + E    L+  + N+     E + ++  + + N+ L+ L   L   
Sbjct: 467 NADNEINKKITEATRDLMAYVRNN---RLEIWDDMPSLDF-NDLLKTLSQELKDH 517


>gi|148257831|ref|YP_001242416.1| putative DNA primase [Bradyrhizobium sp. BTAi1]
 gi|146410004|gb|ABQ38510.1| putative DNA primase [Bradyrhizobium sp. BTAi1]
          Length = 437

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 53/176 (30%), Gaps = 58/176 (32%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP---S---FHCN 56
            P   +  L    P+  + G++V   R         Y   CP   E  P   S   F CN
Sbjct: 18  IPDHELLALKERNPVHEIAGRWVKLRRNGRKG----YIGPCPMCSE-NPQGRSATKFECN 72

Query: 57  DSKGFYYCFS-CHVKGDHLSFLSALLGCSFIESVQR------------LAAIAGV----- 98
             K  + C   C   GD +  +    G  F  +++R            LA +AG+     
Sbjct: 73  SVK--WVCAGQCQDGGDVIKLVQKREGVDFRAAIERLGGVRDEKPTPALARMAGLRAYQA 130

Query: 99  -----PLP----------------------VVDPKIEKKEKIQTDLIRLIEVATDF 127
                 +P                        D ++  +E+ +  L    +  + +
Sbjct: 131 GEPLGEVPAPFGDDPDLRMAWVRGWGDGRKRADYEVFARERERKRLYDFWQAGSRW 186


>gi|291556151|emb|CBL33268.1| DNA primase (bacterial type) [Eubacterium siraeum V10Sc8a]
          Length = 212

 Score = 82.6 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           + +   I +      Y          V  +  ACCPFH+++ PS   N+   +++CF C 
Sbjct: 11  ETIKAAISVKQAAEHY-GLK------VSHNGMACCPFHNDRHPSLKLNED--YFFCFGCG 61

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI 113
            KGD +  ++ L   S  E+ Q+LAA  G+           K K 
Sbjct: 62  AKGDVIDLVARLFDLSSYEAAQKLAADFGLDPKPPTAAAMVKPKR 106


>gi|295115815|emb|CBL36662.1| DNA primase (bacterial type) [butyrate-producing bacterium SM4/1]
          Length = 186

 Score = 82.6 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFHD+K PS   +     ++CF C   GD + F + L G +  E+  +LA    V 
Sbjct: 1   MACCPFHDDKHPSMKVDR---RFHCFGCQADGDVIDFTARLFGLNKKEAALKLAEDFSVS 57

Query: 100 LPVVDPKIEKKEKIQTDLIR 119
                    ++  ++  +  
Sbjct: 58  FDAKGHDPPRRRPVKRKISE 77


>gi|257879418|ref|ZP_05659071.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257813646|gb|EEV42404.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
          Length = 214

 Score = 82.6 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 24/113 (21%)

Query: 30  RKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESV 89
              N       ACCPFH +KTPS   +     Y+CF C   GD + F +AL G    E+ 
Sbjct: 24  AGRNG-----MACCPFHHDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLGKKEAA 75

Query: 90  QRLAAIAGVPLP-------------VVDPKIEKKEKIQTDLIRLIEVATDFFH 129
            +LA   G+                      E+ ++ +    R++    D+FH
Sbjct: 76  VQLAQDFGLSYEDWKPPGKAKKPKPRQKSPEEQFQEAKNRCFRIL---ADYFH 125


>gi|218673939|ref|ZP_03523608.1| DNA primase [Rhizobium etli GR56]
          Length = 48

 Score = 82.6 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/48 (52%), Positives = 34/48 (70%)

Query: 1  MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE 48
          M +   F+ ++   +PISN+I + V WD+RKTN  +GDYWACCPFH E
Sbjct: 1  MRFSNTFLDEIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGE 48


>gi|52697314|gb|AAU86394.1| primase [Shigella boydii]
          Length = 169

 Score = 82.6 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 2   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 62  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGETLRIYL 121

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163


>gi|85057458|ref|YP_456374.1| DNA primase [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789563|gb|ABC65295.1| DNA primase [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 441

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 88/440 (20%), Positives = 166/440 (37%), Gaps = 78/440 (17%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVK--GDYWACCPFHDEKTPSF-HCND 57
           MN+ ++ IK++ I+ P+S      V   +      K    Y   CP H  + P+  H   
Sbjct: 1   MNF-QEKIKNIQINFPMS------VLLKKLNIIPPKFNPKYRFPCPIHQGQNPTCCHLTS 53

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRL------------------------ 92
                +C+ C    D +     + G  +F  +++++                        
Sbjct: 54  DNKI-HCWKCCKDYDIIDVYMEIRGIKTFNNALEKINNFMKTQEFKNLIQQQTSTPNISY 112

Query: 93  --------AAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLH--- 141
                         P+   +     K ++  ++  L     D++H+ L   R+   H   
Sbjct: 113 EPFKYQYHHNKINNPIDEKEINAT-KTQLFKEISPLFNQIRDYYHYLLTTNRNNESHLGL 171

Query: 142 -YYLDERGIDSHAIEMFKLGYAPDS----RYSLREHLRQKGFSEEKIIEAGLLIDGDNSA 196
            Y   +R +    I+ FKLGYAP S     + L  + +++     K+IE G + D  N  
Sbjct: 172 EYLTQKRKLTIETIKEFKLGYAPLSDKPLSFRLLNYCKKQNIDTIKLIEYGFIKDKTNQQ 231

Query: 197 T---SYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLNSPETILFHKGKNL 248
                +D F   +I PI +   +   F           + +     N  +T  FH     
Sbjct: 232 NKTYYHDTFHGSIIIPIENGYNKTFHFYQNNFREVSYFQPKYKSLNNFSQTPTFHFS--- 288

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQ 306
           Y FF AL Y++              II+ EG+ DV+S  Q  ++NVV  +     L++ Q
Sbjct: 289 YRFFEALPYIK----------QMKTIIIHEGFFDVISCWQNNIKNVVGLICVTQLLSKSQ 338

Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIR 364
           + +L K + ++++  D D+ G + +    + +    I       +       +D D  +R
Sbjct: 339 IEILKKENIKVIIALDNDETGQKRSEALGEQLKEENIIYEIRRILPPYDKTCKDVDDLLR 398

Query: 365 CYGKTAFEKLIVESLPLVDM 384
            +GK A++K  ++     + 
Sbjct: 399 QFGKEAYQKCFLDPYITYEE 418


>gi|52697312|gb|AAU86393.1| primase [Shigella boydii]
          Length = 168

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 2   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 62  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGETLRIYL 121

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163


>gi|160939408|ref|ZP_02086758.1| hypothetical protein CLOBOL_04301 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437618|gb|EDP15380.1| hypothetical protein CLOBOL_04301 [Clostridium bolteae ATCC
           BAA-613]
          Length = 206

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
              CPFH+++ PS   N+   ++YCF C   GD + F++ L G +  E+ Q+LA   G+ 
Sbjct: 29  MCSCPFHEDQHPSMKLNER--YFYCFGCGATGDVIDFVARLFGLNSYEAAQKLAQDFGID 86

Query: 100 LPVVDPKIEKKEKIQTDLIRLIEV 123
            P   P      K +  L++    
Sbjct: 87  -PDKPPAAIALPKPERPLLKAYRQ 109


>gi|52697298|gb|AAU86386.1| primase [Shigella boydii]
          Length = 166

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 2   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 62  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGETLRIYL 121

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163


>gi|52697326|gb|AAU86400.1| primase [Shigella dysenteriae]
          Length = 167

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 1   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 61  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGETLRIYL 120

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162


>gi|283796097|ref|ZP_06345250.1| DNA primase [Clostridium sp. M62/1]
 gi|291076310|gb|EFE13674.1| DNA primase [Clostridium sp. M62/1]
          Length = 217

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 13/120 (10%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M     F + +   +P       Y V   +           ACCPFHD+K PS   +   
Sbjct: 1   MRKSNVF-EAVKQSVPTRQAAEYYGVQIGKNG--------MACCPFHDDKHPSMKVDR-- 49

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
             ++CF C   GD + F + L   S  E+  +LA    V          ++  ++  +  
Sbjct: 50  -RFHCFGCQADGDVIDFTARLFSLSSKEAALKLAEDFSVRYDAKGHDPPRRRPVKRKISE 108


>gi|160944095|ref|ZP_02091325.1| hypothetical protein FAEPRAM212_01597 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444771|gb|EDP21775.1| hypothetical protein FAEPRAM212_01597 [Faecalibacterium prausnitzii
           M21/2]
          Length = 864

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 71/557 (12%), Positives = 155/557 (27%), Gaps = 42/557 (7%)

Query: 13  IHIPISNLI---GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69
             + I  L+    +Y  + ++          + CPFHD++ PSF  +   G + CF+C  
Sbjct: 7   DKVNIDELVNYKEEYTKFVQKP-EFKHDRMVSLCPFHDDRKPSFSVDLKTGKFVCFACGK 65

Query: 70  KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129
            G+++SF + L G S  ++ +++    GV          KKE  +     + + A +   
Sbjct: 66  AGNYVSFRAELDGTSNADAYKKILREHGVD-------ETKKEPAKPKSYTVEDYAAE--- 115

Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL 189
             L       +     ++  D                   R+ +    F         ++
Sbjct: 116 KKLPAEWLHMVCSLESKQEQDGTPYVKIPYFNIESKVQVTRKRMGNHSFKWGYGSAGKMI 175

Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE-TILFHKGKNL 248
             G       +     ++    S    +   G   L    +  +   PE        + L
Sbjct: 176 PYGLWRKEGMEVAGYTILVEGESDSQTLWFLGYPALGIPGASTFK--PEWVEDLKSIETL 233

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           Y         +       +   +      +G +   S   AG ++  +       +    
Sbjct: 234 YIH---KEPDRGGQTFFEKVTEALKNAGYKGEVKTFSCADAGEKDPSALYIKLGKDAAQD 290

Query: 309 LLWKLSPRI-VLCFDGDDPGLRAAYKAIDLVLCHLIPGNR--VNFVLLSRGEDPDSFIRC 365
            L +L     V+  D     + AA +     L               +    D    +  
Sbjct: 291 KLDELLENAKVVDLDHLADDVPAAIEGAPKNLRQPPGWQYGEFGISRIDEKTDQLVCVCR 350

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
                 ++L         +    + +    +    R+ +           K   +    +
Sbjct: 351 TPIILTKRLKRTDTGEEKIEVAWKRDGEWHDAIFPRSMIFQSRSITALADKGCTVTSENA 410

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP----------SQRLMQSSLVKGK 475
           + +   L  L Q+ I              + R +  P             + + +    K
Sbjct: 411 KQVVRFLGALEQENIDALGLQESTSTFGWQSRHRFLPGHAPDMVLDIEPSMTRWATAYLK 470

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--L 533
                + RE     T+  H    + +++ +    +    L  +   +F  +         
Sbjct: 471 NGTLDAWRE-----TMTQHRN--RYRFRFILASSFAAPLLAIIKQRIFFVYNWGGSRGGK 523

Query: 534 PEEIHQRLCERGFGELL 550
              +   L   G  E L
Sbjct: 524 TAALKAALSAWGDPERL 540


>gi|52697284|gb|AAU86379.1| primase [Escherichia coli]
 gi|52697320|gb|AAU86397.1| primase [Shigella dysenteriae]
 gi|52697324|gb|AAU86399.1| primase [Shigella dysenteriae]
 gi|52697332|gb|AAU86403.1| primase [Shigella dysenteriae]
 gi|52697364|gb|AAU86419.1| primase [Shigella flexneri 2a]
          Length = 169

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 2   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 62  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163


>gi|52697296|gb|AAU86385.1| primase [Shigella flexneri]
 gi|52697334|gb|AAU86404.1| primase [Shigella dysenteriae]
 gi|52697346|gb|AAU86410.1| primase [Escherichia coli]
 gi|52697768|gb|AAU86621.1| primase [Escherichia coli]
          Length = 168

 Score = 82.2 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 1   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 61  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162


>gi|210613345|ref|ZP_03289665.1| hypothetical protein CLONEX_01872 [Clostridium nexile DSM 1787]
 gi|210151187|gb|EEA82195.1| hypothetical protein CLONEX_01872 [Clostridium nexile DSM 1787]
          Length = 228

 Score = 82.2 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFHD++ PS   +     ++CF+C   GD + F S L G S  E+  +LA    + 
Sbjct: 43  MACCPFHDDRHPSMKVDR---RFHCFACQADGDVIDFTSRLFGLSSKEAALKLAEDFSIS 99

Query: 100 LPVVDPKIEKKEKIQTDLIRLIE 122
                    +K  I+  +   + 
Sbjct: 100 FDRKGHDPPQKRVIKRKISEEMR 122


>gi|291562405|emb|CBL41221.1| DNA primase (bacterial type) [butyrate-producing bacterium SS3/4]
          Length = 206

 Score = 82.2 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 9/105 (8%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           + +   I +      Y          V  +  ACCPFH+++ PS   N+   +++CF C 
Sbjct: 5   ETIKAAISVKQAAEHY-GLK------VSHNGMACCPFHNDRHPSLKLNED--YFFCFGCG 55

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI 113
            KGD +  ++ L   S  E+ Q+LA   G+           K K 
Sbjct: 56  AKGDVIDLVARLFNLSSYEAAQKLALDFGLDPKPPTAAAMVKPKR 100


>gi|310825843|ref|YP_003958200.1| hypothetical protein ELI_0217 [Eubacterium limosum KIST612]
 gi|308737577|gb|ADO35237.1| hypothetical protein ELI_0217 [Eubacterium limosum KIST612]
          Length = 228

 Score = 82.2 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFHD++ PS   +     ++CF+C   GD + F S L G S  E+  +LA    + 
Sbjct: 43  MACCPFHDDRHPSMKVDR---RFHCFACQADGDVIDFTSRLFGLSSKEAALKLAEDFSIS 99

Query: 100 LPVVDPKIEKKEKIQTDLIRLIE 122
                    +K  I+  +   + 
Sbjct: 100 FDRKGHDPPQKRVIKRKISEEMR 122


>gi|224024339|ref|ZP_03642705.1| hypothetical protein BACCOPRO_01063 [Bacteroides coprophilus DSM
           18228]
 gi|224017561|gb|EEF75573.1| hypothetical protein BACCOPRO_01063 [Bacteroides coprophilus DSM
           18228]
          Length = 292

 Score = 82.2 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I  +   IP+++ + +  +    R        + W   P+ +E+TPSF  N  K  +Y F
Sbjct: 6   IDAMRQ-IPLADFLARLGHEPIRRSGN-----ELWYRAPYRNERTPSFRVNVKKQLWYDF 59

Query: 66  SCHVKGDHLSFLSALLGC-SFIESVQRLAAIAGVPLPVVD 104
                GD  +     +G   F+E V+ +A  A +P+PV +
Sbjct: 60  GTGRGGDIFTLAGEFIGSGDFMEQVKFIAETANIPMPVPE 99


>gi|238923195|ref|YP_002936710.1| DNA primase [Eubacterium rectale ATCC 33656]
 gi|238925053|ref|YP_002938569.1| DNA primase [Eubacterium rectale ATCC 33656]
 gi|238874869|gb|ACR74576.1| DNA primase [Eubacterium rectale ATCC 33656]
 gi|238876728|gb|ACR76435.1| DNA primase [Eubacterium rectale ATCC 33656]
          Length = 214

 Score = 82.2 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 30  RKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESV 89
              N       ACCPFH +KTPS   +     Y+CF C   GD + F +AL G    E+ 
Sbjct: 24  AGRNG-----MACCPFHHDKTPSMKLD---QRYHCFGCGADGDVIDFAAALYGLGKKEAA 75

Query: 90  QRLAAIAGVPLP 101
            +LA   G+   
Sbjct: 76  VQLAQDFGLSYE 87


>gi|223985976|ref|ZP_03636008.1| hypothetical protein HOLDEFILI_03314 [Holdemania filiformis DSM
           12042]
 gi|223962032|gb|EEF66512.1| hypothetical protein HOLDEFILI_03314 [Holdemania filiformis DSM
           12042]
          Length = 222

 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 31  KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQ 90
             N       ACCPFH++KTPS   +     Y+CF C   GD + F +AL G    E+  
Sbjct: 35  GRNG-----MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFTAALYGLGKKEAAV 86

Query: 91  RLAAIAGVPLP 101
           +LA   G+   
Sbjct: 87  QLAQDFGLSYE 97


>gi|323693688|ref|ZP_08107887.1| DNA primase [Clostridium symbiosum WAL-14673]
 gi|323502302|gb|EGB18165.1| DNA primase [Clostridium symbiosum WAL-14673]
          Length = 214

 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 29  RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88
           R   N       ACCPFH++KTPS   +     Y+CF C   GD + F +AL G    E+
Sbjct: 23  RVGRNG-----MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLGKKEA 74

Query: 89  VQRLAAIAGVPLP 101
             +LA   G+   
Sbjct: 75  AVQLAQDFGLSYE 87


>gi|301309569|ref|ZP_07215511.1| putative mobilizable transposon, excision protein [Bacteroides sp.
           20_3]
 gi|300832658|gb|EFK63286.1| putative mobilizable transposon, excision protein [Bacteroides sp.
           20_3]
          Length = 292

 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 9/100 (9%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I  +   IP+++ + +  +    R        + W   P+ +E+TPSF  N +K  +Y F
Sbjct: 6   IDAMRH-IPLADFLARLGHEPVRRSGN-----ELWYRAPYRNERTPSFRVNVAKQLWYDF 59

Query: 66  SCHVKGDHLSFLSALLG-CSFIESVQRLAAIAGVPLPVVD 104
                GD  +     +G   F+E V+ +A  A +P+PV +
Sbjct: 60  GTGKGGDIFTLAGEFIGSNDFMEQVKFIAETANMPMPVPE 99


>gi|52697304|gb|AAU86389.1| primase [Shigella boydii]
          Length = 163

 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 1   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 61  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGETLRIYL 120

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162


>gi|52697300|gb|AAU86387.1| primase [Shigella sonnei]
 gi|52697338|gb|AAU86406.1| primase [Escherichia coli]
          Length = 168

 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 2   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 62  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163


>gi|149003982|ref|ZP_01828790.1| DNA primase [Streptococcus pneumoniae SP14-BS69]
 gi|147758041|gb|EDK65047.1| DNA primase [Streptococcus pneumoniae SP14-BS69]
          Length = 187

 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 17/178 (9%)

Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFG 253
               D F NR++FP+ + +G+VIAF GR   K +S   KY NS  T +F+K   LY+   
Sbjct: 22  NQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTAIFNKSYELYHMDR 81

Query: 254 ALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKL 313
           A     K          +S I L+EG+MDV++  +AG++N V+S+GTAL+   +  L +L
Sbjct: 82  AKKSSGK----------TSEIYLMEGFMDVIAAYRAGIENAVASMGTALSREHVEHLKRL 131

Query: 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371
           + ++VL +DGD  G  A  KA+D      I    V  V +    DPD +++   +  +
Sbjct: 132 TKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPDEYLQKMVQKTW 184


>gi|52697354|gb|AAU86414.1| primase [Escherichia coli]
 gi|52697766|gb|AAU86620.1| primase [Escherichia coli]
          Length = 167

 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 2   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 62  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163


>gi|52697306|gb|AAU86390.1| primase [Shigella boydii]
 gi|52697348|gb|AAU86411.1| primase [Escherichia coli]
 gi|52697380|gb|AAU86427.1| primase [Escherichia coli]
 gi|52697776|gb|AAU86625.1| primase [Escherichia coli]
 gi|52697780|gb|AAU86627.1| primase [Escherichia coli]
          Length = 167

 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 1   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 61  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162


>gi|52697292|gb|AAU86383.1| primase [Shigella flexneri]
 gi|52697310|gb|AAU86392.1| primase [Shigella sonnei]
 gi|52697330|gb|AAU86402.1| primase [Shigella flexneri 2a]
 gi|52697350|gb|AAU86412.1| primase [Escherichia coli]
 gi|52697762|gb|AAU86618.1| primase [Escherichia coli]
 gi|52697764|gb|AAU86619.1| primase [Escherichia coli]
          Length = 166

 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 2   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 62  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163


>gi|52697318|gb|AAU86396.1| primase [Shigella dysenteriae]
 gi|52697368|gb|AAU86421.1| primase [Shigella flexneri]
 gi|52697370|gb|AAU86422.1| primase [Shigella flexneri]
 gi|52697782|gb|AAU86628.1| primase [Escherichia coli]
          Length = 166

 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 1   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 61  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162


>gi|52697240|gb|AAU86357.1| primase [Escherichia albertii]
 gi|52697242|gb|AAU86358.1| primase [Shigella boydii]
 gi|52697244|gb|AAU86359.1| primase [Shigella boydii]
          Length = 169

 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 2   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 62  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 163


>gi|52697302|gb|AAU86388.1| primase [Shigella sonnei]
 gi|52697772|gb|AAU86623.1| primase [Escherichia coli]
 gi|52697774|gb|AAU86624.1| primase [Escherichia coli]
 gi|52697790|gb|AAU86632.1| primase [Escherichia coli]
          Length = 165

 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 1   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 61  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162


>gi|331088121|ref|ZP_08337042.1| hypothetical protein HMPREF1025_00625 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330409077|gb|EGG88536.1| hypothetical protein HMPREF1025_00625 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 187

 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFHD+K PS   +     ++CF C   GD + F + L G S  E+  +LA    V 
Sbjct: 1   MACCPFHDDKHPSMKVDR---RFHCFGCQADGDVIDFTARLFGLSGKEAALKLAEDFSVR 57

Query: 100 LPVVDPKIEKKEKIQTDLIR 119
                    ++  ++  +  
Sbjct: 58  YDAKGHDPPRRRPVKRKISE 77


>gi|160934589|ref|ZP_02081975.1| hypothetical protein CLOLEP_03462 [Clostridium leptum DSM 753]
 gi|156866042|gb|EDO59414.1| hypothetical protein CLOLEP_03462 [Clostridium leptum DSM 753]
          Length = 214

 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 19/103 (18%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH +KTPS   +     Y+CF C   GD + F +AL G    E+  +LA   G+ 
Sbjct: 29  MACCPFHHDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLS 85

Query: 100 LP-------------VVDPKIEKKEKIQTDLIRLIEVATDFFH 129
                                E+ ++ +    R++    D+FH
Sbjct: 86  YEDWKPPGKAKKPKPRQKSPEEQFQEAKNRCFRIL---ADYFH 125


>gi|332661927|ref|YP_004451396.1| hypothetical protein Halhy_6708 [Haliscomenobacter hydrossis DSM
           1100]
 gi|332337424|gb|AEE54523.1| hypothetical protein Halhy_6708 [Haliscomenobacter hydrossis DSM
           1100]
          Length = 348

 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M  P         +IP+ +L+ + +     +      D W   PF  EKTPSFH +  + 
Sbjct: 40  MTVPEA------KNIPLVDLLAR-LGHQPAEVRQGGNDVWYLSPFRQEKTPSFHIHQGRN 92

Query: 61  FYYCFSCH--VKGDHLSFLSALLGCSFIESVQRLAAIAG 97
            +Y F       G+ + F+     CSF  ++  L  + G
Sbjct: 93  VWYDFGDGSSEGGNLIDFVMRQQQCSFARAMAFLEKLYG 131


>gi|291535048|emb|CBL08160.1| DNA primase (bacterial type) [Roseburia intestinalis M50/1]
          Length = 234

 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 13/145 (8%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFHD+K PS   +     ++CF C   GD + F + L G S  E+  +LA    V 
Sbjct: 49  MACCPFHDDKHPSMKIDR---RFHCFGCQADGDVIDFTARLFGLSNKEAALKLAEDFSVR 105

Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159
                    ++  ++  +   +      +  +     +++    L +        E    
Sbjct: 106 YDAKGHDPPRRRPVKRKISEELR-----YRQA-----EQKCFRVLCDYLHLLEQWEQEYS 155

Query: 160 GYAPDSRYSLREHLRQKGFSEEKII 184
              P+  ++       +     + +
Sbjct: 156 PQTPEEAWNPLFVEALQKKPYTEYL 180


>gi|52697282|gb|AAU86378.1| primase [Escherichia coli]
 gi|52697786|gb|AAU86630.1| primase [Escherichia coli]
          Length = 163

 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 1   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 61  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162


>gi|55420478|gb|AAV52093.1| putative TraA conjugation protein [Nocardioides sp. JS614]
          Length = 1818

 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 124/318 (38%), Gaps = 30/318 (9%)

Query: 114  QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
            +  +I + E+   FF     ++  +         GID    E F+ G AP    +L +HL
Sbjct: 1516 RERMIEINEITQTFFESRFTDSWGRDYL--TGRFGIDLAGHEHFRPGQAPAGWTNLVDHL 1573

Query: 174  RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK------ 227
            R +G S  +++  G+     ++    DRFR+R++FP+    G+V+ F GR   +      
Sbjct: 1574 RHRGVSGAEMLATGVAT-TASTGRLIDRFRDRVMFPVVH-NGEVLGFVGRRRPELTDADQ 1631

Query: 228  ---GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284
                   KYLN+ +T LFHKG  LY               D      +  ++VEG MD +
Sbjct: 1632 ANGRGGPKYLNTADTPLFHKGAQLYG------------VVDELLAEGAVPVIVEGPMDAI 1679

Query: 285  S--LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342
            +  L  A     V+ LGT+LT+ Q   L  +    ++  D D  G  AA +   ++  H 
Sbjct: 1680 AVTLASAARYVGVAPLGTSLTDEQASQLGGIGRDPIVATDADLAGEVAAERDFWMLTPH- 1738

Query: 343  IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
              G    +     G DP   +   G  A    +     L D L     +N +       A
Sbjct: 1739 --GLDPGYARFPEGLDPADLLAQRGPAALTASLASGQTLGDQLLSERLDNLAPEQARVAA 1796

Query: 403  ELEIHLKNCINHIKDQKL 420
               +  +      +    
Sbjct: 1797 MRVLAARPSRAWRRAPTW 1814


>gi|52697784|gb|AAU86629.1| primase [Escherichia coli]
          Length = 162

 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 1   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 61  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162


>gi|52697770|gb|AAU86622.1| primase [Escherichia coli]
          Length = 164

 Score = 81.5 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 1   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 61  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162


>gi|296450780|ref|ZP_06892532.1| DNA primase [Clostridium difficile NAP08]
 gi|296260402|gb|EFH07245.1| DNA primase [Clostridium difficile NAP08]
          Length = 177

 Score = 81.5 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 17/101 (16%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            A CPFH++K PS   +     ++CF+C   GD + F+S L G    E+  +LA   G+ 
Sbjct: 1   MAVCPFHNDKNPSMKVDK---RFHCFACQADGDVIDFVSRLCGLPCKEAAMKLADDFGIS 57

Query: 100 ----------LPVVDPKIEK-KEKIQTDLIRLIEVATDFFH 129
                       + +P  E+  +K +    R++   TD+FH
Sbjct: 58  YDSRHKPTVRPHIREPTAEQLYQKEEARCYRVL---TDYFH 95


>gi|52697236|gb|AAU86355.1| primase [Escherichia albertii]
 gi|52697238|gb|AAU86356.1| primase [Shigella boydii]
 gi|52697246|gb|AAU86360.1| primase [Escherichia albertii]
 gi|52697248|gb|AAU86361.1| primase [Escherichia albertii]
 gi|52697254|gb|AAU86364.1| primase [Shigella boydii]
 gi|52697256|gb|AAU86365.1| primase [Shigella boydii]
 gi|52697258|gb|AAU86366.1| primase [Shigella boydii]
 gi|52697260|gb|AAU86367.1| primase [Shigella boydii]
          Length = 168

 Score = 81.5 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 2   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 62  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 163


>gi|52697316|gb|AAU86395.1| primase [Shigella dysenteriae]
 gi|52697778|gb|AAU86626.1| primase [Escherichia coli]
 gi|52697788|gb|AAU86631.1| primase [Escherichia coli]
          Length = 161

 Score = 81.5 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 77/161 (47%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 1   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 61  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
            Q + ++L  L    +            +      K  + R
Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMR 161


>gi|52697252|gb|AAU86363.1| primase [Shigella boydii]
          Length = 166

 Score = 81.5 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 2   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 62  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 163


>gi|52697262|gb|AAU86368.1| primase [Shigella boydii]
 gi|52697382|gb|AAU86428.1| primase [Shigella boydii]
          Length = 167

 Score = 81.5 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 1   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 61  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 162


>gi|189459508|ref|ZP_03008293.1| hypothetical protein BACCOP_00132 [Bacteroides coprocola DSM 17136]
 gi|189433760|gb|EDV02745.1| hypothetical protein BACCOP_00132 [Bacteroides coprocola DSM 17136]
          Length = 303

 Score = 81.5 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 5/105 (4%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
              I  +   +PI + + +                W   P+ +EKTPSF  N  K  +Y 
Sbjct: 2   ETEIDRMK-KMPIEDFLAR---LGHHPVQRRANAVWYRSPYREEKTPSFKVNPEKNLWYD 57

Query: 65  FSCHVKGDHLSFLSALLGC-SFIESVQRLAAIAGVPLPVVDPKIE 108
           F     G+  +     +    F+  V+ +A ++G+PLP  +P+  
Sbjct: 58  FGEGKGGNIFALAGEFIRTDDFLAQVKYVAEMSGMPLPEHEPRQS 102


>gi|52697264|gb|AAU86369.1| primase [Shigella boydii]
          Length = 166

 Score = 81.5 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 1   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 61  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 162


>gi|120599012|ref|YP_963586.1| P4 family phage/plasmid primase [Shewanella sp. W3-18-1]
 gi|120559105|gb|ABM25032.1| phage / plasmid primase, P4 family [Shewanella sp. W3-18-1]
          Length = 906

 Score = 81.5 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 68/356 (19%), Positives = 124/356 (34%), Gaps = 52/356 (14%)

Query: 43  CPFHDEKTPSFHCN---DSKGFYYCFSCHVKGDHLSFLSALLG-CSFIESVQRL------ 92
           CPF   K   F  +        Y+C+SC V+GD  +FL          ++  +L      
Sbjct: 58  CPFCGHK-GCFKLHCEESENEHYFCYSCGVRGDIFNFLVHFDQAKHSRDAAIKLINGELD 116

Query: 93  ---------AAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYY 143
                    A    V    ++   E+    +  L      A +++   + +     L   
Sbjct: 117 GVTILPAPRANRTKVEAERIELTAEQ-FARRQALYLA---AWEYYFEQMIDGESTPLQSL 172

Query: 144 LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR 203
           +D+R +  + +  +++GY   SR +L  +L    F+ E++  +GL+ +   S       +
Sbjct: 173 MDKRKLSQNVLIDYEVGY---SRGALWRYLIDSEFTLEEMYASGLVKESPQSP-YDFFPK 228

Query: 204 NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIR 263
              IFP     G +                   PE       K  Y              
Sbjct: 229 GVYIFPHYDETGAIC------------RFTFKDPE------KKVAYQLSKLFWLNNIQFY 270

Query: 264 KDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK--LSPRIVLCF 321
                N    + +VEG  D+L+L   G Q  V +    +++ QL  + +      +V  F
Sbjct: 271 GQHTMNRQGTVAVVEGEFDLLALMDHGWQGPVIATNGQISQAQLAWIKENLHDRNVVTFF 330

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
           D D  G +   K + L L           +   +G+D D ++R     + E L+ +
Sbjct: 331 DSDPAGDKYREKLVQLGLPA----LVQVTLPEGQGKDIDDYLRQDNALSIEVLVEQ 382


>gi|157325072|ref|YP_001468497.1| gp117 [Listeria phage A511]
 gi|66733080|gb|AAY52898.1| gp117 [Listeria phage A511]
          Length = 353

 Score = 81.5 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 116/361 (32%), Gaps = 50/361 (13%)

Query: 33  NAVKGDYWACCPFHDEKTPSFHC----NDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88
             +  +   CCPF  E    F+     + ++G ++C  C+ KG+ ++F+   L  +F ++
Sbjct: 14  KDIGHELRFCCPFCGEDDYKFYVKVSGDKTEGLWHCKKCNEKGNPVTFVMKYLNINFKDA 73

Query: 89  VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148
           +  L  +    +             + + + ++          LK + +       +E  
Sbjct: 74  LDIL-EVYDYEIDENSLSSRDVGVTEEEFLLIL----------LKKSSEPEEVETSEEMT 122

Query: 149 IDSHAIEMFKLGYAPDSRY----SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR- 203
           +    +       A +           +   +G + +++    +    +      D    
Sbjct: 123 LTPPRLPTNFKRLADNMNNPEALPFLNYAHSRGITLDQLFLHNIGYVIEGQVEKVDGNMM 182

Query: 204 ---NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260
              N L+F    + GQ   +  R ++      +    +   + K   ++N   A      
Sbjct: 183 TLRNHLVFLTHGNDGQYQYWNTRAITPTGIKAFNAPSKQDEYSKRTTVFNLNIAK----- 237

Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR---I 317
                    ++ ++I+ EG +D L++ ++     V++ G  +T  Q+ LL         I
Sbjct: 238 ---------NTPYVIVHEGVIDALTMGES----GVATFGKQITREQIELLLNNVREDQPI 284

Query: 318 VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            L  D +     A      +             V+    ED +               V 
Sbjct: 285 YLFLDTE-----AYEVTTKIASSLYEKHKETYIVIHGD-EDANDMGYEKSWDCLRNNSVR 338

Query: 378 S 378
           +
Sbjct: 339 A 339


>gi|254977003|ref|ZP_05273475.1| DNA primase [Clostridium difficile QCD-66c26]
 gi|255651922|ref|ZP_05398824.1| DNA primase [Clostridium difficile QCD-37x79]
          Length = 217

 Score = 81.5 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 20/121 (16%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M     F + +   +P       Y +   R            CCPFHD+K PS   +   
Sbjct: 1   MRKSNVF-EAVKQAVPTRQAAESYGIQLGRNG--------MTCCPFHDDKHPSMKVDR-- 49

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA-------GVPLPVVDPKIEKKEK 112
             ++CF C   GD + F + L G +  ++  +LA          G   P   P   K  +
Sbjct: 50  -RFHCFGCQADGDVIDFTARLFGLNKKDAALKLAEDFSVGFDAKGHDPPRRKPGKRKISE 108

Query: 113 I 113
            
Sbjct: 109 E 109


>gi|326569162|gb|EGE19224.1| CHC2 zinc finger family protein [Moraxella catarrhalis BC1]
          Length = 185

 Score = 81.5 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 12/88 (13%)

Query: 12  LIHIPISNL---IGQY----VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
                ++ L   I  Y    +               A CPFHD++ PS   N   G Y C
Sbjct: 99  RQRADLARLPSPIDFYHTYGLTLKGGGVWR-----MAVCPFHDDRHPSLSINTDHGGYIC 153

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRL 92
             C   GD + F  A  G  F+++ + L
Sbjct: 154 HVCGASGDMVGFYMARFGVDFVQACKEL 181


>gi|296113715|ref|YP_003627653.1| CHC2 zinc finger family protein [Moraxella catarrhalis RH4]
 gi|295921409|gb|ADG61760.1| CHC2 zinc finger family protein [Moraxella catarrhalis RH4]
          Length = 185

 Score = 81.5 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 12/88 (13%)

Query: 12  LIHIPISNL---IGQY----VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
                ++ L   I  Y    +               A CPFHD++ PS   N   G Y C
Sbjct: 99  RQRADLARLPSPIDFYHTYGLTLKGGGVWR-----MAVCPFHDDRHPSLSINTDHGGYIC 153

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRL 92
             C   GD + F  A  G  F+++ + L
Sbjct: 154 HVCGASGDMVGFYMARFGVDFVQACKEL 181


>gi|52697250|gb|AAU86362.1| primase [Shigella boydii]
          Length = 165

 Score = 81.5 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 2   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 62  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 163


>gi|52697266|gb|AAU86370.1| primase [Escherichia albertii]
          Length = 163

 Score = 81.5 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 1   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 61  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 162


>gi|66732761|gb|AAY53352.1| gp49 [Listeria phage P100]
          Length = 353

 Score = 81.5 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 116/361 (32%), Gaps = 50/361 (13%)

Query: 33  NAVKGDYWACCPFHDEKTPSFHC----NDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88
             +  +   CCPF  E    F+     + ++G ++C  C+ KG+ ++F+   L  +F ++
Sbjct: 14  KDIGHELRFCCPFCGEDDYKFYVKVSGDKTEGLWHCKKCNEKGNPVTFVMKYLNINFKDA 73

Query: 89  VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148
           +  L  +    +             + + + ++          LK + +       +E  
Sbjct: 74  LDIL-EVYDYEIDENSLSSRDVGVTEEEFLLIL----------LKKSSEPEEVEISEEVT 122

Query: 149 IDSHAIEMFKLGYAPDSRY----SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR- 203
           +    +       A +           +   +G + +++    +    +      D    
Sbjct: 123 LTPPRLPTNFKRLADNMNNPEALPFLNYAHSRGITLDQLFLHNIGYVIEGQVEKVDGNMM 182

Query: 204 ---NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260
              N L+F    + GQ   +  R ++      +    +   + K   ++N   A      
Sbjct: 183 TLRNHLVFLTHGNDGQYQYWNTRAITPMGIKAFNAPSKQDEYSKRTTVFNLNIAK----- 237

Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR---I 317
                    ++ ++I+ EG +D L++ ++     V++ G  +T  Q+ LL         I
Sbjct: 238 ---------NTPYVIVHEGVIDALTMGES----GVATFGKQITREQIELLLNNVREDQPI 284

Query: 318 VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            L  D +     A      +             V+    ED +               V 
Sbjct: 285 YLFLDTE-----AYEVTTKIASSLYEKHKETYIVIHGD-EDANDMGYEKSWDCLRNNSVR 338

Query: 378 S 378
           +
Sbjct: 339 A 339


>gi|52697268|gb|AAU86371.1| primase [Shigella boydii]
 gi|52697270|gb|AAU86372.1| primase [Shigella boydii]
 gi|52697276|gb|AAU86375.1| primase [Shigella boydii]
 gi|52697322|gb|AAU86398.1| primase [Shigella boydii]
 gi|52697358|gb|AAU86416.1| primase [Escherichia coli]
 gi|52697366|gb|AAU86420.1| primase [Shigella flexneri]
          Length = 165

 Score = 81.1 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 78/161 (48%)

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
            ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R 
Sbjct: 1   HIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRK 60

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y  
Sbjct: 61  EGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLR 120

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
           Q + ++L  L    +            +      K  + R+
Sbjct: 121 QELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 161


>gi|52697274|gb|AAU86374.1| primase [Shigella boydii]
 gi|52697792|gb|AAU86633.1| primase [Escherichia coli]
          Length = 164

 Score = 81.1 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 78/161 (48%)

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
            ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R 
Sbjct: 1   HIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRK 60

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y  
Sbjct: 61  EGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLR 120

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
           Q + ++L  L    +            +      K  + R+
Sbjct: 121 QELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 161


>gi|326562838|gb|EGE13128.1| CHC2 zinc finger family protein [Moraxella catarrhalis 46P47B1]
          Length = 185

 Score = 81.1 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
            A CPFHD++ PS   N   G Y C  C   GD + F  A  G  F+++ + L
Sbjct: 129 MAVCPFHDDRHPSLSINTDHGGYICHVCGASGDMVGFYMARFGVDFVQACKEL 181


>gi|52697342|gb|AAU86408.1| primase [Escherichia coli]
          Length = 163

 Score = 81.1 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 78/160 (48%)

Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
           ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  
Sbjct: 1   IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 60

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
           GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q
Sbjct: 61  GKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQ 120

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            + ++L  L    +            +      K  + R+
Sbjct: 121 ELGNKLGILDDSQLERLIPKAAESGVSRPVPQLKRTTMRI 160


>gi|281422162|ref|ZP_06253161.1| putative DNA primase [Prevotella copri DSM 18205]
 gi|281403667|gb|EFB34347.1| putative DNA primase [Prevotella copri DSM 18205]
          Length = 356

 Score = 80.7 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/364 (12%), Positives = 96/364 (26%), Gaps = 40/364 (10%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             + +I+ L   + I  +                 +  A C  HD+  PS   N  K   
Sbjct: 2   IDKMYIQKLRE-LDIMKVADA--------LGMGIRNKRALCIHHDDHHPSLAFNPRKNSC 52

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +C+SC    D +  +      +F+++ + LA    V +        ++ K    L+   +
Sbjct: 53  HCYSCGFSADTIGLVMERFQMNFLDACKWLANQFDVYI-----GDTEQYKSHNQLVTASQ 107

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLR---EHLRQKGFS 179
              D           +  H       +D    E             L    + +      
Sbjct: 108 RRLDSIRSICAQRMVEHGHVDATCSRVDVEYFERLFAQMHLTESGELFLLEKRMLSPEVV 167

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
           E   I +                   LIFP  +  G++++   R L + +          
Sbjct: 168 ERCHIVSTETKVCMGRVGQGTFDAPSLIFPYFNQEGKLVSVQSRYLGEEKEKSRFKFAPG 227

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
                 + +Y       Y +              +++ EG  D  +    G   +     
Sbjct: 228 ----SHRMVYGLERLKEYPK-----------QEPLLITEGPSDCWTALTLGFHAIAIPSA 272

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T       + L +    + +  D D+ G    ++                       +D 
Sbjct: 273 TLFDS-HCQPLLE-GRNLHMFPDQDEAGFNLYFELKKSFPQLKYHQL------PDGCKDL 324

Query: 360 DSFI 363
               
Sbjct: 325 SEHY 328


>gi|52697308|gb|AAU86391.1| primase [Shigella boydii]
          Length = 159

 Score = 80.7 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 77/159 (48%)

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
           +LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  G
Sbjct: 1   QLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEG 60

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
           K AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q 
Sbjct: 61  KEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGETLRIYLRQE 120

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
           + ++L  L    +            +      K  + R+
Sbjct: 121 LGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 159


>gi|332877361|ref|ZP_08445109.1| CHC2 zinc finger domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332684744|gb|EGJ57593.1| CHC2 zinc finger domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 290

 Score = 80.7 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 34  AVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA-LLGCSFIESVQRL 92
               + W   P+ +E+TPSF  N +K  +Y F     GD  +     +    F+E V+ +
Sbjct: 28  RSGNELWYRAPYRNERTPSFRVNVAKQLWYDFGTGKGGDIFTLAGEFIRSGDFMEQVKFI 87

Query: 93  AAIAGVPLPVVD-PKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYY 143
           A  A +P+PV +  +   + K        +E A   FH  L +   +R   Y
Sbjct: 88  AETANMPMPVPEVSRPTFQPKPSEPAFEGVE-AAPLFHSPLTDYLAERGIPY 138


>gi|294645853|ref|ZP_06723533.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CC 2a]
 gi|294805773|ref|ZP_06764651.1| CHC2 zinc finger domain protein [Bacteroides xylanisolvens SD CC
           1b]
 gi|292638804|gb|EFF57142.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CC 2a]
 gi|294447024|gb|EFG15613.1| CHC2 zinc finger domain protein [Bacteroides xylanisolvens SD CC
           1b]
          Length = 290

 Score = 80.7 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 34  AVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA-LLGCSFIESVQRL 92
               + W   P+ +E+TPSF  N +K  +Y F     GD  +     +    F+E V+ +
Sbjct: 28  RSGNELWYRAPYRNERTPSFRVNVAKQLWYDFGTGKGGDIFTLAGEFIRSGDFMEQVKFI 87

Query: 93  AAIAGVPLPVVD-PKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYY 143
           A  A +P+PV +  +   + K        +E A   FH  L +   +R   Y
Sbjct: 88  AETANMPMPVPEVSRPTFQPKPSEPAFEGVE-AAPLFHSPLTDYLAERGIPY 138


>gi|52697272|gb|AAU86373.1| primase [Shigella boydii]
          Length = 165

 Score = 80.7 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 78/161 (48%)

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
            ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R 
Sbjct: 1   HIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRK 60

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y  
Sbjct: 61  EGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLR 120

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
           Q + ++L  L    +            +      K  + R+
Sbjct: 121 QELGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 161


>gi|52697294|gb|AAU86384.1| primase [Shigella boydii]
 gi|52697796|gb|AAU86635.1| primase [Escherichia coli]
          Length = 164

 Score = 80.7 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 78/160 (48%)

Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
           ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  
Sbjct: 1   IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 60

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
           GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q
Sbjct: 61  GKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQ 120

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            + ++L  L    +            +      K  + R+
Sbjct: 121 ELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 160


>gi|52697344|gb|AAU86409.1| primase [Escherichia coli]
 gi|52697376|gb|AAU86425.1| primase [Escherichia coli]
 gi|52697794|gb|AAU86634.1| primase [Escherichia coli]
          Length = 163

 Score = 80.7 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 78/160 (48%)

Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
           ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  
Sbjct: 1   IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 60

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
           GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q
Sbjct: 61  GKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQ 120

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            + ++L  L    +            +      K  + R+
Sbjct: 121 ELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 160


>gi|52697336|gb|AAU86405.1| primase [Escherichia coli]
          Length = 162

 Score = 80.7 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 77/159 (48%)

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
           +LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  G
Sbjct: 1   QLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEG 60

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
           K AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q 
Sbjct: 61  KEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQE 120

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
           + ++L  L    +            +      K  + R+
Sbjct: 121 LGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 159


>gi|310826737|ref|YP_003959094.1| DNA primase [Eubacterium limosum KIST612]
 gi|308738471|gb|ADO36131.1| DNA primase [Eubacterium limosum KIST612]
          Length = 203

 Score = 80.7 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 2/95 (2%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            A CPFH+++ PS +  D    Y+CF+C   GD +   + L      ++ ++LA+   + 
Sbjct: 29  MALCPFHNDRHPSLYVLDDH--YHCFACGEHGDVIDLTAKLFDLRLYDAARKLASDFHLA 86

Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKN 134
                P+  +++       + +          L  
Sbjct: 87  PDKPLPEAIRRKMQHKTKAQQLRENERLCFSVLNE 121


>gi|309778118|ref|ZP_07673055.1| DNA primase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914124|gb|EFP59927.1| DNA primase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 214

 Score = 80.7 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH++KTPS   +     Y+CF C   GD + F +A+ G +  E+  +LA   G+ 
Sbjct: 29  MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFAAAMYGLAKKEAAVQLANDFGLS 85

Query: 100 LP 101
             
Sbjct: 86  YE 87


>gi|154502942|ref|ZP_02040002.1| hypothetical protein RUMGNA_00763 [Ruminococcus gnavus ATCC 29149]
 gi|153796481|gb|EDN78901.1| hypothetical protein RUMGNA_00763 [Ruminococcus gnavus ATCC 29149]
          Length = 214

 Score = 80.7 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH++KTPS   +     Y+CF C   GD + F +AL G    E+  +LA   G+ 
Sbjct: 29  MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLS 85

Query: 100 LP 101
             
Sbjct: 86  YE 87


>gi|294775591|ref|ZP_06741100.1| CHC2 zinc finger domain protein [Bacteroides vulgatus PC510]
 gi|294450533|gb|EFG19024.1| CHC2 zinc finger domain protein [Bacteroides vulgatus PC510]
          Length = 290

 Score = 80.7 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 34  AVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLG-CSFIESVQRL 92
               + W   P+ +E+TPSF  N +K  +Y F     GD  +     +G   F+E V+ +
Sbjct: 28  RSGNELWYRAPYRNERTPSFRVNVAKQLWYDFGTGKGGDIFTLAGEFIGSNDFMEQVKFI 87

Query: 93  AAIAGVPLPVVD 104
           A  A +P+PV +
Sbjct: 88  AETANMPMPVPE 99


>gi|46242777|gb|AAS83482.1| TraP [Bacteroides fragilis]
          Length = 292

 Score = 80.7 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 34  AVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLG-CSFIESVQRL 92
               + W   P+ +E+TPSF  N +K  +Y F     GD  +     +G   F+E V+ +
Sbjct: 28  RSGNELWYRAPYRNERTPSFRVNVAKQLWYDFGTGKGGDIFTLAGEFIGSNDFMEQVKFI 87

Query: 93  AAIAGVPLPVVD 104
           A  A +P+PV +
Sbjct: 88  AETANMPMPVPE 99


>gi|52697378|gb|AAU86426.1| primase [Escherichia coli]
          Length = 161

 Score = 80.7 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 78/160 (48%)

Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
           ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  
Sbjct: 1   IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 60

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
           GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q
Sbjct: 61  GKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQ 120

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            + ++L  L    +            +      K  + R+
Sbjct: 121 ELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 160


>gi|52697372|gb|AAU86423.1| primase [Escherichia coli]
 gi|52697374|gb|AAU86424.1| primase [Escherichia coli]
          Length = 165

 Score = 80.3 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 78/161 (48%)

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
            ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R 
Sbjct: 1   HIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRK 60

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y  
Sbjct: 61  EGKQAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLR 120

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
           Q + ++L  L    +            +      K  + R+
Sbjct: 121 QELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 161


>gi|52697280|gb|AAU86377.1| primase [Shigella boydii]
 gi|57996852|emb|CAI45874.1| negative response regulator [Escherichia coli]
          Length = 159

 Score = 80.3 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 75/157 (47%)

Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
           L++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  GK 
Sbjct: 2   LFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKE 61

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
           AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q + 
Sbjct: 62  AFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELG 121

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
           ++L  L    +            +      K  + R+
Sbjct: 122 NKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 158


>gi|52697278|gb|AAU86376.1| primase [Shigella boydii]
          Length = 163

 Score = 80.3 bits (196), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 77/159 (48%)

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
           +LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  G
Sbjct: 1   QLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEG 60

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
           K AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q 
Sbjct: 61  KEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQE 120

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
           + ++L  L    +            +      K  + R+
Sbjct: 121 LGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 159


>gi|52697798|gb|AAU86636.1| primase [Escherichia coli]
          Length = 158

 Score = 80.3 bits (196), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 75/157 (47%)

Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
           L++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  GK 
Sbjct: 2   LFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKE 61

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
           AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q + 
Sbjct: 62  AFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELG 121

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
           ++L  L    +            +      K  + R+
Sbjct: 122 NKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 158


>gi|52697800|gb|AAU86637.1| primase [Escherichia coli]
          Length = 158

 Score = 80.3 bits (196), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 75/157 (47%)

Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
           L++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  GK 
Sbjct: 1   LFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKE 60

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
           AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q + 
Sbjct: 61  AFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELG 120

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
           ++L  L    +            +      K  + R+
Sbjct: 121 NKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 157


>gi|52697352|gb|AAU86413.1| primase [Escherichia coli]
          Length = 168

 Score = 80.3 bits (196), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 2   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 62  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRLVPQLKRTTMRI 163


>gi|52697356|gb|AAU86415.1| primase [Escherichia coli]
          Length = 166

 Score = 80.3 bits (196), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 78/162 (48%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R
Sbjct: 2   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 62  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRLVPQLKRTTMRI 163


>gi|251780062|ref|ZP_04822982.1| DNA primase related protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084377|gb|EES50267.1| DNA primase related protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 879

 Score = 80.3 bits (196), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 43  CPFHDEKTPSFHC----NDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
           CPFH EKTPSF      N +K  Y C+ C   GD + F+  +    + ++ + L    G+
Sbjct: 29  CPFHSEKTPSFSIKFIPNANKYRYRCWGCDATGDAIDFIMNIKNVDYKKAREIL----GI 84

Query: 99  PLPVVDPK 106
                + +
Sbjct: 85  QGEKTERE 92


>gi|288926511|ref|ZP_06420430.1| mobilizable transposon, excision protein [Prevotella buccae D17]
 gi|288336723|gb|EFC75090.1| mobilizable transposon, excision protein [Prevotella buccae D17]
          Length = 296

 Score = 80.3 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 75/231 (32%), Gaps = 19/231 (8%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I+ +   IPI++ + Q  Y     +        YW C P  +E TPSF  N  +  +Y F
Sbjct: 3   IQHIKQ-IPITDYLQQQCYTPTRVQG-----IHYWYCSPLRNEGTPSFKVNTERNQWYDF 56

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
                GD +  +  L  C+  E+++ L     +         E+K          +E+ +
Sbjct: 57  GTGEHGDIIDLVCTLQHCTMNEAIELLIDSKQIVHQDFSFGGERKTSKHK-----LEIIS 111

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
                SL N     L  Y+ ERGI       F      ++       +     +    I 
Sbjct: 112 ---VQSLTNPY---LLRYIVERGISLSIANRFCSEIRYNNTNRTYYAIGFANDAGGWEIR 165

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
           +                +   +  I       +++    LS       LNS
Sbjct: 166 SPYFKGCIAPKAITTISKGTDVLQIFEGFMDFLSWQTLNLSSICDTIVLNS 216


>gi|293400255|ref|ZP_06644401.1| DNA primase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306655|gb|EFE47898.1| DNA primase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 208

 Score = 80.3 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFHD+K PS   +     ++CF C   GD + F + L G +  ++  +LA    V 
Sbjct: 23  MACCPFHDDKHPSMKVDR---RFHCFGCQADGDVIDFTARLFGLNKKDAALKLAEDFSVG 79

Query: 100 LPVVDPKIEKKEKIQTDLIR 119
                    +++ ++  +  
Sbjct: 80  FDAKGHDPPRRKPVKRKISE 99


>gi|260588276|ref|ZP_05854189.1| DNA primase [Blautia hansenii DSM 20583]
 gi|260541414|gb|EEX21983.1| DNA primase [Blautia hansenii DSM 20583]
          Length = 208

 Score = 80.3 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH++KTPS   +     Y+CF C   GD + F +AL G    E+  +LA   G+ 
Sbjct: 23  MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLS 79

Query: 100 LP 101
             
Sbjct: 80  YE 81


>gi|281420593|ref|ZP_06251592.1| putative DNA primase [Prevotella copri DSM 18205]
 gi|281405366|gb|EFB36046.1| putative DNA primase [Prevotella copri DSM 18205]
          Length = 364

 Score = 80.3 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/369 (14%), Positives = 92/369 (24%), Gaps = 48/369 (13%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I+ L   +PI  +  +               + A CPFHD+   S   N +K    C+ C
Sbjct: 7   IQKLRE-LPIEKVAKE--------MGMKVEHHKALCPFHDDHHASLTFNKTKNSCRCYVC 57

Query: 68  HVK--GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
                G  +      LG  F  + + LA    + L       +      +          
Sbjct: 58  MRSSIGT-IDLAMRYLGKDFPSACRWLAEEHQIQLEEDSSSGKSSSFGGSSG-------- 108

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFSEEKII 184
                +   +         D       A    +    P    + R     ++      + 
Sbjct: 109 ---RGASSGSSSDGSSSGDDSGKSSFDASRYARFFEHPWLNQAARRFLFEERKIDWRVVN 165

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-------------KGESV 231
              L    D          N L  P   + G++I    R L                   
Sbjct: 166 WCRLTSWTDKKGI------NWLQIPYFDTDGRLIGIQNRNLDYTKKKSSSGGCSSDENVS 219

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
                P              +GA   +        R      + + EG  D  ++  AG 
Sbjct: 220 SEEKRPGEEKEQDAPRFRFPYGARCSIYNL-PVVKRLKPGERLFITEGCSDCWAMLSAGH 278

Query: 292 QNVVSSLGTALTEYQLRLL----WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           + +     T L     +LL            +  D D PG     +  +++   +     
Sbjct: 279 KAIAIPSATLLKPEDKQLLTDIGKLYQVEFHMFPDQDVPGESLFMQLREMLPQLVHHQLP 338

Query: 348 VNFVLLSRG 356
                 S  
Sbjct: 339 PGCKDFSEY 347


>gi|52697360|gb|AAU86417.1| primase [Escherichia coli]
          Length = 169

 Score = 79.9 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 77/162 (47%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L   EDPD+ +R
Sbjct: 2   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDDEDPDTLVR 61

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 62  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163


>gi|52697288|gb|AAU86381.1| primase [Escherichia coli]
          Length = 168

 Score = 79.9 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 77/162 (47%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L   EDPD+ +R
Sbjct: 2   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDDEDPDTLVR 61

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 62  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163


>gi|153810252|ref|ZP_01962920.1| hypothetical protein RUMOBE_00633 [Ruminococcus obeum ATCC 29174]
 gi|253578305|ref|ZP_04855577.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|149833431|gb|EDM88512.1| hypothetical protein RUMOBE_00633 [Ruminococcus obeum ATCC 29174]
 gi|251850623|gb|EES78581.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 227

 Score = 79.9 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH +KTPS   +     Y+CF C   GD + F +AL G    E+  +LA   G+ 
Sbjct: 42  MACCPFHHDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLS 98

Query: 100 LP 101
             
Sbjct: 99  YE 100


>gi|325270572|ref|ZP_08137172.1| DNA primase [Prevotella multiformis DSM 16608]
 gi|324987148|gb|EGC19131.1| DNA primase [Prevotella multiformis DSM 16608]
          Length = 296

 Score = 79.9 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 74/232 (31%), Gaps = 21/232 (9%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I+++   I I++         ++           +W C P  +E TPSF  N  +  +Y 
Sbjct: 3   IQNIKQ-ISITDY------LQQQGYSPARVQGIHFWYCSPLRNENTPSFKVNTERNQWYD 55

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           F     GD +  + AL  C+  ++++ L  I  V         E+K          +E+ 
Sbjct: 56  FGTGEHGDIIDLVCALQHCTISKAIELLGDIKQVAHRDFSFGGERKTSKHK-----LEII 110

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
           +     SL N     L  Y+ ERGI              ++       +     +    I
Sbjct: 111 S---VQSLTNPY---LLRYIAERGISLSIANRLCSEIRYNNTNRTYYAIGFSNDAGGWEI 164

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
            +                +   +  I       +++    LS       LNS
Sbjct: 165 RSPYFKGCIAPKAITTISKGTDVLQIFEGFMDFLSWQTLNLSSTCDTIVLNS 216


>gi|52697340|gb|AAU86407.1| primase [Escherichia coli]
          Length = 167

 Score = 79.9 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 77/162 (47%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L   EDPD+ +R
Sbjct: 1   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDDEDPDTLVR 60

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 61  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162


>gi|52697290|gb|AAU86382.1| primase [Escherichia coli]
          Length = 166

 Score = 79.9 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 77/162 (47%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L   EDPD+ +R
Sbjct: 1   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDDEDPDTLVR 60

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 61  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162


>gi|52697362|gb|AAU86418.1| primase [Escherichia coli]
          Length = 165

 Score = 79.9 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 77/162 (47%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L   EDPD+ +R
Sbjct: 1   DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDDEDPDTLVR 60

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y 
Sbjct: 61  KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q + ++L  L    +            +      K  + R+
Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162


>gi|225377312|ref|ZP_03754533.1| hypothetical protein ROSEINA2194_02959 [Roseburia inulinivorans DSM
           16841]
 gi|225210843|gb|EEG93197.1| hypothetical protein ROSEINA2194_02959 [Roseburia inulinivorans DSM
           16841]
          Length = 214

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH++KTPS   +     Y+CF C   GD + F +AL G +  E+  +LA   G+ 
Sbjct: 29  MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLAKKEAAVQLANDFGLS 85

Query: 100 LP 101
             
Sbjct: 86  YE 87


>gi|160890228|ref|ZP_02071231.1| hypothetical protein BACUNI_02668 [Bacteroides uniformis ATCC
          8492]
 gi|317480211|ref|ZP_07939318.1| DNA primase [Bacteroides sp. 4_1_36]
 gi|156859960|gb|EDO53391.1| hypothetical protein BACUNI_02668 [Bacteroides uniformis ATCC
          8492]
 gi|316903593|gb|EFV25440.1| DNA primase [Bacteroides sp. 4_1_36]
          Length = 1017

 Score = 79.5 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 18/106 (16%)

Query: 1  MNYPRDFIKDLLIHI--PISNLIGQYVDWDRRKTNAVKGDYWACCPFH--DEKTPSFHCN 56
          M + +D IK +       + ++IG + +  +R       +Y   CP     EK    H +
Sbjct: 1  MYFTQDDIKRIKEASKGRLLDVIGDFHELRKRGA-----EYKCECPKCHGQEK---LHIS 52

Query: 57 DSKGFYYCFSC----HVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
           +K  + CFSC        + L +L       F+E+   LA    V
Sbjct: 53 PAKQIFKCFSCPDIKGK--EPLDYLQRAEDMQFLEACDYLARKFNV 96


>gi|325680135|ref|ZP_08159701.1| CHC2 zinc finger domain protein [Ruminococcus albus 8]
 gi|324108210|gb|EGC02460.1| CHC2 zinc finger domain protein [Ruminococcus albus 8]
          Length = 198

 Score = 79.5 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           +++   + +      Y           +G+  A CPFH E+ PS    +    YYCF C 
Sbjct: 5   EEVKELVDVPTAARSY------GVEVHRGN-MALCPFHRERHPSCKLYEDH--YYCFGCQ 55

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIA--GVPLPVVDPKIEKKEKIQTDL 117
             GD +  +  L G S IE+V+++ +    G+ L    P  +  +K + ++
Sbjct: 56  AHGDVIKLVQELFGLSAIEAVKQINSDFALGLDLDKP-PDNKAIQKRRREI 105


>gi|160943487|ref|ZP_02090720.1| hypothetical protein FAEPRAM212_00978 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445166|gb|EDP22169.1| hypothetical protein FAEPRAM212_00978 [Faecalibacterium prausnitzii
           M21/2]
          Length = 151

 Score = 79.5 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
           CCPFH +K PS   +     ++CF+C   GD + F+  L   S  ++V++L    G+ L 
Sbjct: 3   CCPFHGDKHPSMKVDS---RFHCFACQADGDVIDFVGRLFQLSPYKAVEKLKNDFGMELA 59

Query: 102 VVDPKIEKKEKI--QTDLIRLIEVATDF 127
               ++  +     +  L+        +
Sbjct: 60  DGKVRLAPRRPPTVRQQLLDYYRCLQRW 87


>gi|109392511|ref|YP_655640.1| gp61 [Mycobacterium phage Che12]
 gi|91980661|gb|ABE67380.1| gp61 [Mycobacterium phage Che12]
          Length = 129

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
              CPFH E+TPS   +     + CF+C V+GD +S +      SF E+V+ +A   G+ 
Sbjct: 28  KCLCPFHGEETPSAAVSYDNQGFNCFACSVRGDVISIIRHEEEVSFAEAVR-IAE--GIS 84

Query: 100 LPVVDPKIEKKEKI 113
           +    P   K  + 
Sbjct: 85  VGSNVPLQRKPPRK 98


>gi|325860513|ref|ZP_08173621.1| CHC2 zinc finger domain protein [Prevotella denticola CRIS 18C-A]
 gi|325481977|gb|EGC85002.1| CHC2 zinc finger domain protein [Prevotella denticola CRIS 18C-A]
          Length = 225

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 10/88 (11%)

Query: 8  IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
          I+++     IS  I +Y    ++           +W C P  +E TPSF  N  +  +Y 
Sbjct: 3  IQNIKQ---IS--ITEY--LQQQGYSPARVQGIHFWYCSPLRNESTPSFKVNTERNQWYD 55

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRL 92
          F     GD +  + AL  C+  E+++ L
Sbjct: 56 FGTGEHGDIIDLVCALQHCTMNEAIELL 83


>gi|305432456|ref|ZP_07401618.1| DNA primase [Campylobacter coli JV20]
 gi|304444495|gb|EFM37146.1| DNA primase [Campylobacter coli JV20]
          Length = 359

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 141/354 (39%), Gaps = 24/354 (6%)

Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYK 333
           +I+ EGYMD ++  +AG  N V+ LGTALTE  L L+ +   +++LCFD D+ GL AA +
Sbjct: 1   MIVCEGYMDAIAFHKAGFNNAVAVLGTALTENHLPLIHRYEAKVILCFDNDEAGLNAATR 60

Query: 334 AIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR 393
           +  L+  H I G      LL  G+DP   +          L+ + + L +   +R   + 
Sbjct: 61  SAFLLSTHKIDGK---VALLEGGKDPAELVANNQSAKLHTLLEKGMDLGEFYIRRILSSF 117

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
           S N+  ++ +   +++     ++   +   Y   +   L    +  +   +         
Sbjct: 118 SLNSALDKQKALENIQKYTFSLE-PLVASSYVGLVSKLLGVDEKLIVLTSNR-------- 168

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
                +   +     S       + K  + E  LL  L N+P  + E + +++DIR    
Sbjct: 169 -----KPSKTINFNTSFQQTQNHNPKSHITELELLNYLKNNPN-MHELFIKISDIRCF-- 220

Query: 514 ELQKLWSFLFSDF----VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
           + + L   +         + + F  +   + L +  F   + +++    +    + +  A
Sbjct: 221 KHKVLLEKILEHKSYEDSDIREFESKNFSKDLSQIEFLWGICKVNLAFLNHINITNSYLA 280

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
               +    ++   L  +        E +++ +  +  + + EK   L   LH 
Sbjct: 281 LKKQIFTLIEKNFVLLSKNLNDHELVEFLKENLFLLKNEKDEEKLEALFKNLHR 334


>gi|288871616|ref|ZP_06118254.2| putative DNA primase [Clostridium hathewayi DSM 13479]
 gi|288862782|gb|EFC95080.1| putative DNA primase [Clostridium hathewayi DSM 13479]
          Length = 161

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 12/150 (8%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYYCFSC 67
           +++     + +++ +Y           +  +   CPFH  ++  S    D    ++C +C
Sbjct: 2   EEIKAAYSMRDIVERY------GFRPTRAGFI-PCPFHSGDRQASLKVYDRD--FHCHAC 52

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
              GD + F+  +    F  + Q L      P       + + +K +    ++ E     
Sbjct: 53  GAHGDIIDFVMMMDDVDFKTAYQSLGGEYQKPTFSSRLAVYEAQKQREMRHKMQERIAA- 111

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMF 157
               L N        Y++     S      
Sbjct: 112 -QKDLNNTLLTVYRTYMERSEPLSDIWTDC 140


>gi|291460782|ref|ZP_06600172.1| DNA primase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291416741|gb|EFE90460.1| DNA primase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 203

 Score = 78.8 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 23/125 (18%)

Query: 29  RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88
           +   N +       CPFHD++ PS   +     + CF C  KGD + F+S L      ++
Sbjct: 25  KVGRNGMMK-----CPFHDDRNPSMKVD---QNFICFGCQEKGDVIRFVSKLFDLPPYDA 76

Query: 89  VQRLAAIAGVPLPVVD---------PKIEKKEKIQTDLIR----LIEVATDFFHHSLKNA 135
             +L    G+ +   +          K +++   +    +    +  V  D+F   L N 
Sbjct: 77  AVKLTEDMGLTVTAENRPGVQPGIRKKAKRERTERQQFEQSVDRVYGVYCDYFR--LLNQ 134

Query: 136 RDKRL 140
             +  
Sbjct: 135 WAEEY 139


>gi|332654349|ref|ZP_08420093.1| DNA primase [Ruminococcaceae bacterium D16]
 gi|332517435|gb|EGJ47040.1| DNA primase [Ruminococcaceae bacterium D16]
          Length = 208

 Score = 78.8 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH +KTPS   +     Y+CF C   GD + F +AL G    E+  +LA   G+ 
Sbjct: 23  MACCPFHHDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLGKKEAAIQLANDFGLS 79

Query: 100 LP 101
             
Sbjct: 80  YE 81


>gi|52697286|gb|AAU86380.1| primase [Escherichia coli]
          Length = 163

 Score = 78.8 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 77/160 (48%)

Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
           ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L   EDPD+ +R  
Sbjct: 1   IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDDEDPDTLVRKE 60

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
           GK AFE  + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q
Sbjct: 61  GKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQ 120

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            + ++L  L    +            +      K  + R+
Sbjct: 121 ELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 160


>gi|317501741|ref|ZP_07959928.1| hypothetical protein HMPREF1026_01872 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896863|gb|EFV18947.1| hypothetical protein HMPREF1026_01872 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 224

 Score = 78.8 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 11/95 (11%)

Query: 25  VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS 84
           +   R           ACCPFH ++ PS     +   Y+CF+C V GD + F + L G S
Sbjct: 22  IKVKRNG--------MACCPFHKDRHPSM---KADKIYHCFACGVGGDAIDFTARLFGIS 70

Query: 85  FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
             E+ ++L    G+ + V +    ++      +++
Sbjct: 71  QYEAAKKLVEDFGLDIKVGNRSKYERTPRNRAILK 105


>gi|225377670|ref|ZP_03754891.1| hypothetical protein ROSEINA2194_03321 [Roseburia inulinivorans
          DSM 16841]
 gi|225210534|gb|EEG92888.1| hypothetical protein ROSEINA2194_03321 [Roseburia inulinivorans
          DSM 16841]
          Length = 206

 Score = 78.4 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
             CPFH+++ PS   N+   ++YCF C   GD +  ++ L   S  E+ Q+LA   G+
Sbjct: 29 MCSCPFHEDRHPSMKLNER--YFYCFGCGATGDVIDLVAKLFDLSSYEAAQKLAQDFGI 85


>gi|149003983|ref|ZP_01828791.1| DNA primase [Streptococcus pneumoniae SP14-BS69]
 gi|147758042|gb|EDK65048.1| DNA primase [Streptococcus pneumoniae SP14-BS69]
          Length = 236

 Score = 78.4 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 79/259 (30%), Gaps = 23/259 (8%)

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
              L+ ++       +  + +  +      + E    +   I   K    +  Y   + D
Sbjct: 1   MAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAAQNSYIHILAD 60

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            L       I +     R  ++  R      P+       +   K        EA LL  
Sbjct: 61  SLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAIMRAEAHLLYR 116

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           ++  P ++   Y+   D  +   E Q L+  L                  L      E  
Sbjct: 117 MMESP-LVLNDYRLREDFAFATPEFQVLYDLLGQYGN-------------LPPEVLAEQT 162

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           ++++R            E +  ++ +     + + +   LL++    I+K++ + +  G+
Sbjct: 163 EEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKKKVQEASHVGD 217

Query: 611 AEKTAILISILHEVHIQIH 629
            +     +  L     ++ 
Sbjct: 218 TDTALEELERLISQKRRME 236


>gi|255690379|ref|ZP_05414054.1| putative mobilizable transposon, excision protein [Bacteroides
           finegoldii DSM 17565]
 gi|260624060|gb|EEX46931.1| putative mobilizable transposon, excision protein [Bacteroides
           finegoldii DSM 17565]
          Length = 292

 Score = 78.4 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 10  DLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           D++ HIP+++ + +  +    R        + W   P+ +E+TPSF  N +K  +Y F  
Sbjct: 7   DVMRHIPLADFLARLGHEPVRRSGN-----ELWYRAPYRNERTPSFRVNVAKQLWYDFGL 61

Query: 68  HVKGDHLSFLSA-LLGCSFIESVQRLAAIAGVPLPVVDPK 106
              GD  +     +    F+E V+ +A    +P+PV +  
Sbjct: 62  GKGGDIFTLAGEFIRSNDFMEQVKFIAETVNMPMPVPEGS 101


>gi|327198048|ref|YP_004306415.1| gp3 [Burkholderia phage KL3]
 gi|310657182|gb|ADP02296.1| gp3 [Burkholderia phage KL3]
          Length = 931

 Score = 78.0 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 8/116 (6%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63
           I +L   I + +L    +   R      +  Y    P HD+K+PS          G  + 
Sbjct: 4   IDELKQRIDLHDL-ADRLGLKR-GRGGDRALYH--SPQHDDKSPSLSIYVNHPKHGTGWR 59

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
             S  V G  +  +    G +  ++V+ L    G+PL    P   +++     +  
Sbjct: 60  DHSADVGGSCIDLVIHTRGGTVADAVRYLHDAYGIPLDRQAPAERREKTKFEYIAD 115


>gi|167770082|ref|ZP_02442135.1| hypothetical protein ANACOL_01424 [Anaerotruncus colihominis DSM
           17241]
 gi|167667714|gb|EDS11844.1| hypothetical protein ANACOL_01424 [Anaerotruncus colihominis DSM
           17241]
          Length = 637

 Score = 78.0 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/390 (14%), Positives = 98/390 (25%), Gaps = 83/390 (21%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDR-----RKTNAVKGDYWACCPFHDEKTPSFHC 55
           M +   F+ +L   +P      +Y+   R     R    +        P H ++TPS   
Sbjct: 4   MQWDERFLNELRALLP------EYMAQKRIVVGTRGKKLIH----CINPEHRDRTPSMSY 53

Query: 56  NDSKGFYYCFSCHVKGDHLSFL-SALLGC-SFIESVQRLAAIAGVPLPVVDPKIEKKEKI 113
           +      +CF C    D    +      C SF   V++   +  +PLP   P  +   + 
Sbjct: 54  HPQSRRLHCFGCGANYDLFDVIAMDYPDCDSFPRQVKKACELFCIPLPDNAPASKPGVR- 112

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
                 +   A       L       +   + E G                         
Sbjct: 113 -----AVRRAAAQ--PARLTADYTDMVRAAVAEHGAGGSYFTARG--------------- 150

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
                           I                 +      G+   +  R  S   + +Y
Sbjct: 151 ----------------IPRALCERYSLYEAGGRAWMPVFLDGKCTCYCARATSDNITPRY 194

Query: 234 LNSPE-TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL----CQ 288
            NSP    +F+ G                            + + E  +D LS+     +
Sbjct: 195 KNSPGAMDIFNAGYL------------------TGEGKGGALFIAEAILDALSIEACGYR 236

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           A      +++G  L+             +V   D D  G R      +        G   
Sbjct: 237 AVALCGAANVGKFLSLCAAHPAAAAGYTLVAAGDMDAAGERMNRSLKE---GLEALGLSC 293

Query: 349 NFVLLSRG-EDPDSFIRCYGKTAFEKLIVE 377
             + L  G +D +  +          L   
Sbjct: 294 AVLQLPGGAKDANELLLSDRAALARALAES 323


>gi|74315212|gb|ABA02284.1| DNA primase [Tomato big bud phytoplasma]
          Length = 551

 Score = 78.0 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 98/311 (31%), Gaps = 52/311 (16%)

Query: 43  CPFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
           CPFHD K+  S   N     + C+SC    D ++    + G  F +S   L         
Sbjct: 33  CPFHDSKSGLSADINRQNKIW-CWSCGKAFDTITVYQKITGKDFAQSFTDLTNFYQSAEY 91

Query: 102 VVDPKIEKKEK-------------------------IQTDLIRLIEVATDFFHHSLKNAR 136
               + +                                 ++ + +  + F+   L    
Sbjct: 92  QELTQAKSASAFTCNESFKLSNNENKALNNFANNNLHLDTILAIWDEISHFYQKQLWATP 151

Query: 137 DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSA 196
                Y L +R ++   I+ F++G+A  +  +L  +L  +           LL       
Sbjct: 152 AALD-YLLRKRQLNPLLIKEFQIGFANKNNQNLLNYLENQQADLMPYYAVDLLRKNPKF- 209

Query: 197 TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK------GESVKYLNSPETILFHKGKNLYN 250
            SYD   N  + P+    GQ+I +  R           +     N     +F      Y 
Sbjct: 210 -SYDGCLNCWLIPVFDENGQIIHYY-RHHYPAELPYRPKYQALRNLTNQTIFS---IPYG 264

Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL--R 308
           F  A   +            +   IL EG+ DVL   Q  ++NV+  +  +         
Sbjct: 265 FHYAKKAI----------LDTKTAILHEGFFDVLQSYQNQIKNVIGLITVSNNFSPFILD 314

Query: 309 LLWKLSPRIVL 319
              K   +++L
Sbjct: 315 FFKKYQIKVIL 325


>gi|313112557|ref|ZP_07798220.1| CHC2 zinc finger protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310625123|gb|EFQ08415.1| CHC2 zinc finger protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 151

 Score = 78.0 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
           CCPFH +K PS   +     ++CF+C   GD + F+  L   S  ++V++L    G+ L 
Sbjct: 3   CCPFHGDKHPSMKVDS---RFHCFACQADGDVIDFVGRLFQLSPYKAVEKLKNDFGMALA 59

Query: 102 VVDPKIEKKEKI--QTDLIRLIEVATDF 127
               ++  +     +  L+        +
Sbjct: 60  DGKVRLAPRRPPTVRQQLLDYYRCLQRW 87


>gi|769797|emb|CAA60112.1| dnaE [Enterococcus faecalis]
          Length = 264

 Score = 78.0 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 84/264 (31%), Gaps = 19/264 (7%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
                 +           R+ N   E+ +    L   + +++    R  Y   I    Q 
Sbjct: 7   NHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELLRELTNVQSPLERDRYLNQIAQEFQL 66

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQK----------GPSQRLMQSSLVKGKLSKKPSLRE 484
                  + +   +  +   R   Q+                 ++ +       +    E
Sbjct: 67  SVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPPPMEEPVFEENHVQNKLPLTQVQKAE 126

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            +LL  L+N   + Q   Q+L D  + ++E Q+L+  L S     + F   +    L + 
Sbjct: 127 RSLLFRLMNEQGVRQTV-QQLPDFSFAHDEYQELYFLLESYATLHQSFDIADFINFLQDN 185

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              +L  ++         +   +E +           +AL      + ++K + ++    
Sbjct: 186 QTKQLAIEIA--------YQNLSEESSEREVADLLHVIALSSIAEAIEQKKIQQQEAKRV 237

Query: 605 VTAKGEAEKTAILISILHEVHIQI 628
              + EAE T  +I +  ++  Q 
Sbjct: 238 GNQQLEAELTMEIIQLARQLKAQR 261


>gi|257437683|ref|ZP_05613438.1| DNA primase [Faecalibacterium prausnitzii A2-165]
 gi|257199990|gb|EEU98274.1| DNA primase [Faecalibacterium prausnitzii A2-165]
          Length = 151

 Score = 78.0 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
           CCPFH +K PS   +     ++CF+C   GD + F+  L   S  ++V++L    G+ L 
Sbjct: 3   CCPFHGDKHPSMKVDS---RFHCFACQADGDVIDFVGRLFQLSPYKAVEKLKNDFGMALA 59

Query: 102 VVDPKIEKKE--KIQTDLIRLIEVATDF-FHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158
               ++  +    ++  L+        +   ++ ++  ++    +L+             
Sbjct: 60  DGKVRLAPRRPPSVRQQLLDYYRCLQRWRIRYAPQSPTEELHPCFLEAIKNLDIVEYYLD 119

Query: 159 LGYAPD 164
               PD
Sbjct: 120 CSVLPD 125


>gi|9630442|ref|NP_046874.1| gp58 [Mycobacterium phage D29]
 gi|6136229|sp|O64249|VG58_BPMD2 RecName: Full=Gene 58 protein; AltName: Full=Gp58
 gi|3172306|gb|AAC18499.1| putative DNA primase [Mycobacterium phage D29]
          Length = 129

 Score = 77.6 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 8/101 (7%)

Query: 17  ISNLIGQYVD-WDRRKTNAVKGDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
           I+ +I +Y   WD         ++    CPFH ++TPS   +     + C +C V+GD +
Sbjct: 6   IAEVIQRYYPDWDP---PPDHYEWNKCLCPFHGDETPSAAVSYDLQGFNCLACGVRGDVI 62

Query: 75  SFLSALLGCSFIESVQRLAA--IAGVPLPVVDPKIEKKEKI 113
           S +      SF E+V+ +A     G  +PV      K  + 
Sbjct: 63  SIIRHEEEVSFAEAVR-IAEGLSVGGNIPVQRKPARKPSRR 102


>gi|294855367|gb|ADF44621.1| DNA primase [Escherichia sp. TW09276]
 gi|294855369|gb|ADF44622.1| DNA primase [Escherichia sp. TW09254]
 gi|294855371|gb|ADF44623.1| DNA primase [Escherichia sp. TW09266]
 gi|294855373|gb|ADF44624.1| DNA primase [Escherichia sp. TA04]
 gi|294855375|gb|ADF44625.1| DNA primase [Escherichia sp. B685]
 gi|294855381|gb|ADF44628.1| DNA primase [Escherichia sp. H605]
 gi|294855383|gb|ADF44629.1| DNA primase [Escherichia sp. B49]
 gi|294855385|gb|ADF44630.1| DNA primase [Escherichia sp. TW09308]
 gi|294855387|gb|ADF44631.1| DNA primase [Escherichia sp. B1225]
 gi|294855389|gb|ADF44632.1| DNA primase [Escherichia sp. B646]
 gi|294855391|gb|ADF44633.1| DNA primase [Escherichia sp. E1118]
 gi|294855393|gb|ADF44634.1| DNA primase [Escherichia sp. E1195]
 gi|294855395|gb|ADF44635.1| DNA primase [Escherichia sp. E1196]
 gi|294855397|gb|ADF44636.1| DNA primase [Escherichia sp. E471]
 gi|294855399|gb|ADF44637.1| DNA primase [Escherichia sp. E472]
 gi|294855401|gb|ADF44638.1| DNA primase [Escherichia sp. E620]
 gi|294855403|gb|ADF44639.1| DNA primase [Escherichia sp. M1108]
 gi|294855405|gb|ADF44640.1| DNA primase [Escherichia sp. TA290]
 gi|294855417|gb|ADF44646.1| DNA primase [Escherichia sp. RL325/96]
 gi|294855419|gb|ADF44647.1| DNA primase [Escherichia sp. Z205]
          Length = 148

 Score = 77.6 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 68/147 (46%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  GK AFE  
Sbjct: 2   NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q + ++L  
Sbjct: 62  MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461
           L    +            +      K 
Sbjct: 122 LDDSQLERLMPKAAENGVSRPVPQLKR 148


>gi|52697328|gb|AAU86401.1| primase [Shigella flexneri]
          Length = 153

 Score = 77.6 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 69/149 (46%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  GK AFE  
Sbjct: 4   NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 63

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q + ++L  
Sbjct: 64  MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 123

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           L    +            +      K  +
Sbjct: 124 LDDSQLERLMPKAAESGVSRPVPQLKRTT 152


>gi|268610078|ref|ZP_06143805.1| DNA primase [Ruminococcus flavefaciens FD-1]
          Length = 197

 Score = 77.6 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 9/108 (8%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
            D+   + +      Y           +G+  A CPFH E+ PS         YYCF C 
Sbjct: 5   DDIKELVDVPTAARSY------GVEVHRGN-MALCPFHRERHPSCKLYADH--YYCFGCQ 55

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116
             GD +  +  L G   IE+V++L +   + L +  P   +K   +  
Sbjct: 56  AHGDVIRLVQELFGLRAIEAVKQLNSDFALGLDLDKPPDMEKINRRRR 103


>gi|237726509|ref|ZP_04556990.1| TraP [Bacteroides sp. D4]
 gi|229435035|gb|EEO45112.1| TraP [Bacteroides dorei 5_1_36/D4]
          Length = 292

 Score = 77.6 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 10  DLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           D++  +PI+  + +  +    R        + W   P+  E+TPSF  N +K  +Y F  
Sbjct: 7   DIIRQMPIAVFLARLGHEPVRRSGN-----ELWYIAPYRGERTPSFRVNVAKQLWYDFGL 61

Query: 68  HVKGDHLSFLSALLG-CSFIESVQRLAAIAGVPLPVVD 104
              GD  +     +G   F+E V+ +A  A +P+PV +
Sbjct: 62  GKGGDIFTLAGEFIGSNDFMEQVKFIAETANMPMPVPE 99


>gi|168207054|ref|ZP_02633059.1| CHC2 zinc finger domain protein [Clostridium perfringens E str.
           JGS1987]
 gi|170661571|gb|EDT14254.1| CHC2 zinc finger domain protein [Clostridium perfringens E str.
           JGS1987]
          Length = 625

 Score = 77.6 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 8   IKDLLIHIPISNLIGQ-YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
           +  +   IP+ ++  +  V+   +            C    EKTPS   N  K ++Y F 
Sbjct: 277 LDKIKE-IPLEDVCNRLRVNTSSKGKKLW-------CNIRGEKTPSCCINIDKNYWYDFG 328

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
               GD + F+S +   +  E++ +LA + G+   
Sbjct: 329 TSKGGDVIKFVSEVEKINSKEAIYKLADMFGIEPE 363


>gi|160943406|ref|ZP_02090640.1| hypothetical protein FAEPRAM212_00897 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445266|gb|EDP22269.1| hypothetical protein FAEPRAM212_00897 [Faecalibacterium prausnitzii
           M21/2]
          Length = 202

 Score = 77.6 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
           CCPFH +  PS   ND+  +YYCF C   GD +   + L   +  ++ ++LA+  G+   
Sbjct: 33  CCPFHSDSDPSMKLNDT--YYYCFGCGANGDAIDLTAKLFDLNPRQAAEKLASDFGLDPD 90

Query: 102 VVDPKIEKKEKIQTDLIR 119
                       +  L  
Sbjct: 91  KPPANAIALPPPKRGLTD 108


>gi|293373483|ref|ZP_06619838.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CMC 3f]
 gi|292631621|gb|EFF50244.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CMC 3f]
          Length = 297

 Score = 77.6 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 15/99 (15%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I+ +   IP+++ + +  +    R        + W   P+  E+TPSF  N +K F+Y F
Sbjct: 3   IEAIRT-IPLADFLARLGHEPVRRSGN-----ELWYIAPYRGERTPSFRVNVAKQFWYDF 56

Query: 66  SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100
                GD  +    FL       F+E  + +A  A + +
Sbjct: 57  GLGKGGDIFTLAGEFLQ---SNDFMEQAKFIAEAANITV 92


>gi|34540614|ref|NP_905093.1| mobilizable transposon, excision protein [Porphyromonas gingivalis
           W83]
 gi|34396927|gb|AAQ65992.1| mobilizable transposon, excision protein, putative [Porphyromonas
           gingivalis W83]
          Length = 297

 Score = 77.6 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 74/217 (34%), Gaps = 15/217 (6%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           + D+   + I +         +           +YW C P   E TPSF  N  +  +Y 
Sbjct: 3   LHDIKQ-VSIVDY------LAQAGFEAKLIKGVNYWYCSPLRSELTPSFKVNAERNQWYD 55

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVD-PKIEKKEKIQTDLIRLIE 122
           F+    GD +  +  L  CS  E+++RL+A+ GV L P      I      ++ +  +  
Sbjct: 56  FATGDHGDIIDLVCTLQHCSTAEAMKRLSALKGVRLAPSFSFGGITPVSLQRSSMELISV 115

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS-RYSLREHLRQKGFSEE 181
            A       L  +              + +     K  +A      +    LR   F   
Sbjct: 116 QAVKHPKLLLYLSERGLQPSDASPFLSEVYYKVSRKCFFALGFPNDAGGWELRNPYFKGC 175

Query: 182 KIIEAGLLIDGDNSAT--SYDRFRNRLIFPIRSSRGQ 216
              +A   I G +S     ++ F + L +      GQ
Sbjct: 176 FAPKAITTIKGTDSHKLLLFEGFMDFLSWRKLHPEGQ 212


>gi|168983697|dbj|BAG11727.1| DNA primase [Escherichia coli O55:H7]
 gi|168983699|dbj|BAG11728.1| DNA primase [Escherichia coli O55:H7]
 gi|168983701|dbj|BAG11729.1| DNA primase [Escherichia coli O55:H7]
 gi|168983703|dbj|BAG11730.1| DNA primase [Escherichia coli O55:H7]
 gi|168983705|dbj|BAG11731.1| DNA primase [Escherichia coli O55:H7]
 gi|168986105|dbj|BAG11734.1| DNA primase [Escherichia coli O55:H6]
 gi|168986107|dbj|BAG11735.1| DNA primase [Escherichia coli O55:H6]
 gi|168986109|dbj|BAG11736.1| DNA primase [Escherichia coli O55:H6]
 gi|258642957|gb|ACV86042.1| DNA primase [Shigella flexneri]
 gi|294855365|gb|ADF44620.1| DNA primase [Escherichia sp. TW09231]
 gi|294855377|gb|ADF44626.1| DNA primase [Escherichia sp. TW14182]
 gi|294855379|gb|ADF44627.1| DNA primase [Escherichia albertii TW11588]
 gi|294855407|gb|ADF44641.1| DNA primase [Escherichia sp. TW14263]
 gi|294855409|gb|ADF44642.1| DNA primase [Escherichia sp. TW14264]
 gi|294855411|gb|ADF44643.1| DNA primase [Escherichia sp. TW14265]
 gi|294855413|gb|ADF44644.1| DNA primase [Escherichia sp. TW14266]
 gi|294855415|gb|ADF44645.1| DNA primase [Escherichia sp. TW14267]
 gi|294855437|gb|ADF44656.1| DNA primase [Escherichia coli]
 gi|294855439|gb|ADF44657.1| DNA primase [Escherichia fergusonii]
          Length = 148

 Score = 77.2 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 68/147 (46%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  GK AFE  
Sbjct: 2   NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q + ++L  
Sbjct: 62  MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461
           L    +            +      K 
Sbjct: 122 LDDSQLERLMPKAAESGVSRPVPQLKR 148


>gi|295108029|emb|CBL21982.1| DNA primase (bacterial type) [Ruminococcus obeum A2-162]
          Length = 206

 Score = 77.2 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 9/105 (8%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           + +   I +      Y          V  +  ACCPFH+++ PS   N+   +++CF C 
Sbjct: 5   ETIKAAISVKQAAEHY-GLK------VSHNGMACCPFHNDRHPSLKLNED--YFFCFGCG 55

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI 113
            KGD +  ++ L   S  E+ Q+L A  G+           K K 
Sbjct: 56  AKGDVIDLVARLFDLSSYEAAQKLDADFGLDPKPPTAAAMVKPKR 100


>gi|282877487|ref|ZP_06286306.1| CHC2 zinc finger containing protein [Prevotella buccalis ATCC
          35310]
 gi|281300373|gb|EFA92723.1| CHC2 zinc finger containing protein [Prevotella buccalis ATCC
          35310]
          Length = 296

 Score = 77.2 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 10/88 (11%)

Query: 8  IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
          I+++   I I++         ++    T      +W C P  +E TPSF  N  +  +Y 
Sbjct: 3  IQNIKQ-ISITDY------LQQQGYSPTRIQGIHFWYCSPLRNESTPSFKVNTERNQWYD 55

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRL 92
          F     GD +  +  L  C+  E+++ L
Sbjct: 56 FGTGEHGDIIDLVRTLQHCTMYEAIELL 83


>gi|294855347|gb|ADF44611.1| DNA primase [Escherichia sp. B827]
 gi|294855353|gb|ADF44614.1| DNA primase [Escherichia sp. H442]
 gi|294855357|gb|ADF44616.1| DNA primase [Escherichia sp. TW10509]
 gi|294855359|gb|ADF44617.1| DNA primase [Escherichia sp. TW11930]
 gi|294855361|gb|ADF44618.1| DNA primase [Escherichia sp. TW11966]
 gi|294855443|gb|ADF44659.1| DNA primase [Escherichia fergusonii]
          Length = 148

 Score = 77.2 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 68/147 (46%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  GK AFE  
Sbjct: 2   NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q + ++L  
Sbjct: 62  MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461
           L    +            +      K 
Sbjct: 122 LDDSQLERLMPKAAESSVSRPVPQLKR 148


>gi|294855349|gb|ADF44612.1| DNA primase [Escherichia sp. E1492]
 gi|294855351|gb|ADF44613.1| DNA primase [Escherichia sp. E807]
          Length = 148

 Score = 77.2 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 68/147 (46%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  GK AFE  
Sbjct: 2   NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q + ++L  
Sbjct: 62  MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461
           L    +            +      K 
Sbjct: 122 LDDSQLERLMPKATESSVSRPVPQLKR 148


>gi|224010756|ref|XP_002294335.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969830|gb|EED88169.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 910

 Score = 77.2 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 126/319 (39%), Gaps = 39/319 (12%)

Query: 199 YDRFRNRLIFPIRSSRGQ-VIAFGGRTLSKGE---------SVKYLNSPETILFHKGKNL 248
            DRFR+RL+ PI    GQ VI FGGR L               KY+NSP++ +F K   L
Sbjct: 1   MDRFRSRLMIPILDKSGQHVIGFGGRHLESNHGDEEEKSFTPAKYINSPDSPVFTKKFIL 60

Query: 249 YNFFGALNYLQKSIRKDVRRNSSS-----------FIILVEGYMDVLSLCQAGVQNVVSS 297
           +N   A   + +  ++                    +++VEGY D ++L   GV++VV+S
Sbjct: 61  FNEHKAKVAIGEKSKRTSVEREGDPSLLKALDKTPPVVIVEGYFDAIALSNVGVKSVVAS 120

Query: 298 LGTALTEYQLRLLWKLSP----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL- 352
           +GTAL   QL++   ++     RI+LC DGDD G  A  +     +    P    N +  
Sbjct: 121 MGTALPVEQLKIASDMADIPGGRIILCMDGDDAGKNAVERICSSNILTKTPELNRNEIYV 180

Query: 353 ---LSRGEDPDSFIR-----CYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPD---- 399
                  +DP  F+         K  F+ +++  + P  D   +R     + +  D    
Sbjct: 181 ATLPDEVKDPSDFVDYAGGGSKAKERFDIEVMDTAQPWDDWYVERILSRYNADAKDGADG 240

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
             + L   + + +    +   R      I + L  L  K    +S      +        
Sbjct: 241 SFSTLCDEVSSFLATFTNPADRTRRVYNIAEMLVDLIVKDSDRNSSSLGMMRVQMESDIL 300

Query: 460 KGPSQRLMQSSLVKGKLSK 478
              S++      ++ ++ +
Sbjct: 301 NMASRKASVRESMERRIEQ 319


>gi|331091851|ref|ZP_08340683.1| hypothetical protein HMPREF9477_01326 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402750|gb|EGG82317.1| hypothetical protein HMPREF9477_01326 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 224

 Score = 77.2 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 18/99 (18%)

Query: 25  VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS 84
           +   R           ACCPFH ++ PS     +   Y+CF+C V GD + F + L G S
Sbjct: 22  IKVKRNG--------MACCPFHKDRHPSM---KADKIYHCFACGVGGDAIDFTARLFGIS 70

Query: 85  FIESVQRLAAIAGVPL-------PVVDPKIEKKEKIQTD 116
             E+ ++L    G+ +           P+     K +  
Sbjct: 71  QYEAAKKLVEDFGLDIKVGNRSKYERTPRSRASLKQKQS 109


>gi|260687126|ref|YP_003218260.1| hypothetical protein CDR20291_1769 [Clostridium difficile R20291]
 gi|306521672|ref|ZP_07408019.1| hypothetical protein CdifQ_19545 [Clostridium difficile QCD-32g58]
 gi|260213143|emb|CBE04576.1| putative uncharacterized protein [Clostridium difficile R20291]
          Length = 186

 Score = 77.2 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 10/79 (12%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA----- 96
           CCPFHD+K PS   +     ++CF C   GD + F + L G +  ++  +LA        
Sbjct: 3   CCPFHDDKHPSMKVDR---RFHCFGCQADGDVIDFTARLFGLNKKDAALKLAEDFSVGFD 59

Query: 97  --GVPLPVVDPKIEKKEKI 113
             G   P   P   K  + 
Sbjct: 60  AKGHDPPRRKPGKRKISEE 78


>gi|182624879|ref|ZP_02952658.1| CHC2 zinc finger domain protein [Clostridium perfringens D str.
           JGS1721]
 gi|177909885|gb|EDT72295.1| CHC2 zinc finger domain protein [Clostridium perfringens D str.
           JGS1721]
          Length = 543

 Score = 77.2 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 10/104 (9%)

Query: 8   IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
           +  +   IP+ ++  +  V    +            C    EKTPS   N  K ++Y F 
Sbjct: 195 LDKIKE-IPLEDVCNRLGVHTSPKGKKLW-------CDIRGEKTPSCCINTDKNYWYDFG 246

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK 110
               GD + F+S +   +  E++ RLA + G+  P  + + + K
Sbjct: 247 SSTGGDVIKFVSEVEKINAKEAIYRLADMFGIE-PENNIENQNK 289


>gi|294855423|gb|ADF44649.1| DNA primase [Escherichia albertii]
          Length = 148

 Score = 77.2 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 68/147 (46%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  GK AFE  
Sbjct: 2   NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q + ++L  
Sbjct: 62  MEQAMPLSAFLFNSLIPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461
           L    +            +      K 
Sbjct: 122 LDDSQLERLMPKAAESVVSRPVPQLKR 148


>gi|301057719|ref|ZP_07198792.1| zinc-binding domain of primase-helicase [delta proteobacterium
           NaphS2]
 gi|300448180|gb|EFK11872.1| zinc-binding domain of primase-helicase [delta proteobacterium
           NaphS2]
          Length = 363

 Score = 77.2 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 59/395 (14%), Positives = 111/395 (28%), Gaps = 61/395 (15%)

Query: 16  PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK----GFYYCFSCHVKG 71
            + +LI +Y +  +   +   G+Y + CP    K   FH    +    G ++C  C   G
Sbjct: 3   KVIDLIRKYHEPTKV-ASTNGGEYHSPCPGCGGKD-RFHVWPEENQGEGSWWCRQCGKGG 60

Query: 72  DHLSFLSALLGCSFIESVQRLA----AIAGVPLPVVDPKIEKKEKIQTDLIR-------L 120
           D + FL    G +F E+ +RL      I+    P V    +K E++              
Sbjct: 61  DAIQFLRDFEGLTFREACERLGKTPREISNHENPWVHKDQKKPEEVWRPDPEQGPPPEIW 120

Query: 121 IEVATDF----FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            + A  F    F + +     + +   L  RGI+   I+ F LG+ P +        R+ 
Sbjct: 121 RKKARKFVNWAFENLILMDSGEGIKARLFRRGINEWVIKHFGLGWNPGNEGKDLFRPRES 180

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
                ++   G        +                   ++     R  +       L  
Sbjct: 181 WGLPTELKPDGHKKKLWIPSGLVIP---------HLVGKEIHRIRIRRENGDPKYYVLPG 231

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL-------CQA 289
                  +                 + +      S   +LVE  +D + +        + 
Sbjct: 232 SSMNCLVEDC--------------GVPQLQWPLGSRCYVLVEAELDAMMIRYWANRGHEM 277

Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
                + +            L   +  I+   D D  G R      +          +  
Sbjct: 278 TGVVALGNSSRKPDAKTTDFLKNAAL-ILNALDFDPAGARQIKWWRENFP-------QSK 329

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
              +  G+DP            +  I    P    
Sbjct: 330 RWPVPIGKDPGEAFEQGVP--IQNWIKAGQPKGWF 362


>gi|294855421|gb|ADF44648.1| DNA primase [Escherichia albertii]
 gi|294855425|gb|ADF44650.1| DNA primase [Escherichia albertii]
 gi|294855427|gb|ADF44651.1| DNA primase [Escherichia albertii]
 gi|294855429|gb|ADF44652.1| DNA primase [Escherichia albertii]
 gi|294855431|gb|ADF44653.1| DNA primase [Escherichia albertii]
 gi|294855433|gb|ADF44654.1| DNA primase [Escherichia albertii]
          Length = 148

 Score = 76.8 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 68/147 (46%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  GK AFE  
Sbjct: 2   NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q + ++L  
Sbjct: 62  MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461
           L    +            +      K 
Sbjct: 122 LDDSQLERLMPKAAESVVSRPVPQLKR 148


>gi|294855355|gb|ADF44615.1| DNA primase [Escherichia sp. M863]
          Length = 148

 Score = 76.8 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 68/147 (46%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  GK AFE  
Sbjct: 2   NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q + ++L  
Sbjct: 62  MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461
           L    +            +      K 
Sbjct: 122 LDDSQLERLMPKTAESSVSRPVPQLKR 148


>gi|319644360|ref|ZP_07998833.1| TraP protein [Bacteroides sp. 3_1_40A]
 gi|317384157|gb|EFV65131.1| TraP protein [Bacteroides sp. 3_1_40A]
          Length = 300

 Score = 76.8 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           +  I  +   IP+++ + +  +    R        + W   P+  E+TPSF  N +K  +
Sbjct: 3   QTEIDAIRQ-IPLADFLARLGHEPVRRSGN-----ELWYRAPYRSERTPSFRVNVAKQLW 56

Query: 63  YCFSCHVKGDHLSFLSAL-LGCSFIESVQRLAAIAGVPLPV 102
           Y F     GD  +          F+E  + +A  A + +  
Sbjct: 57  YDFGLGKGGDIFTLAGEFAQSVDFMEQARFIAKAANMVVDR 97


>gi|294855435|gb|ADF44655.1| DNA primase [Escherichia coli]
          Length = 148

 Score = 76.8 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 67/147 (45%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  GK AFE  
Sbjct: 2   NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           +  ++PL   L+         +TPD RA L       I+ +  + LR Y  Q + ++L  
Sbjct: 62  MERAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461
           L    +            +      K 
Sbjct: 122 LDDSQLERLMPKAAESGVSRPVPQLKR 148


>gi|295090425|emb|CBK76532.1| DNA primase (bacterial type) [Clostridium cf. saccharolyticum K10]
          Length = 215

 Score = 76.8 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFHD+  PS   +     YYCF+C VKGD + F S L G S  E+ Q+L    G+P
Sbjct: 29  MACCPFHDDHHPSMKID---QNYYCFACGVKGDVIDFTSRLFGISQFEAAQKLITDFGLP 85

Query: 100 LPVVDPKIEKKEKIQTD 116
           +     K    +    +
Sbjct: 86  IRSEKRKHAPGKSRNRE 102


>gi|258642959|gb|ACV86043.1| DNA primase [Shigella flexneri]
          Length = 148

 Score = 76.8 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 67/147 (45%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  GK AFE  
Sbjct: 2   NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q + ++L  
Sbjct: 62  MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461
           L                 +      K 
Sbjct: 122 LDDXQXERLMPKAAESGVSRPVPQLKR 148


>gi|168210936|ref|ZP_02636561.1| CHC2 zinc finger domain protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|170710977|gb|EDT23159.1| CHC2 zinc finger domain protein [Clostridium perfringens B str.
           ATCC 3626]
          Length = 625

 Score = 76.8 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 12/119 (10%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           +  +   IP+ ++        R   N         C    EKTPS   N  K ++Y F  
Sbjct: 277 LDKIKE-IPLEDVCN------RLGVNTSSKGKKLWCNIRGEKTPSCCINIDKNYWYDFGT 329

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126
              GD + F+S +   +  E++ RLA + G+     DP+     K + +L         
Sbjct: 330 STGGDVIKFVSEVEKINTKEAIYRLADMFGI-----DPENNIPNKNKFNLYISNSDYRK 383


>gi|238026043|ref|YP_002910274.1| Zinc finger protein, CHC2-type [Burkholderia glumae BGR1]
 gi|237875237|gb|ACR27570.1| Zinc finger protein, CHC2-type [Burkholderia glumae BGR1]
          Length = 931

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 8/108 (7%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63
           I +L   I + +L    +   R      +  Y    P HD+K+PS          G  + 
Sbjct: 4   IDELKQRIDLHDL-ADRLGLKR-GRGGDRALYH--SPQHDDKSPSLSIYVNHPKHGTGWR 59

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111
             S    G  +  +    G +  ++V+ L    G+PL    P   +++
Sbjct: 60  DHSADAGGSCIDLVIHARGGTVADAVRYLHDTYGIPLDRQAPAERREK 107


>gi|171316505|ref|ZP_02905722.1| zinc finger CHC2-family protein [Burkholderia ambifaria MEX-5]
 gi|171098339|gb|EDT43144.1| zinc finger CHC2-family protein [Burkholderia ambifaria MEX-5]
          Length = 931

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63
           I +L   I + +L    +   R      +  Y    P HD+K+PS          G  + 
Sbjct: 4   IDELKQRIDLHDL-ADRLGLKR-GRGGDRALYH--SPQHDDKSPSLSIYVNHPKHGTGWR 59

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111
             S  V G  +  +    G +  ++V+ L    G+PL    P   +++
Sbjct: 60  DHSADVGGSCIDLVIHTRGGTVADAVRYLHDAYGIPLDRQGPAERREK 107


>gi|166033475|ref|ZP_02236304.1| hypothetical protein DORFOR_03201 [Dorea formicigenerans ATCC
           27755]
 gi|166026660|gb|EDR45417.1| hypothetical protein DORFOR_03201 [Dorea formicigenerans ATCC
           27755]
          Length = 212

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 19/123 (15%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH +K+PS   ++    YYCF C   GD +   + L G    E+  +LA   G+ 
Sbjct: 29  MACCPFHSDKSPSMKLDE---RYYCFGCGATGDAVDLTAKLFGIGLREAAVKLAEDFGLN 85

Query: 100 LPVVDP-----------KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148
                              +K +K +    +++   TD+FH  L    +K+      +  
Sbjct: 86  YDSRQKPSVRPRIREPTPEQKYQKEENHCYKVL---TDYFH--LLREWEKKYAPKQPDEE 140

Query: 149 IDS 151
            + 
Sbjct: 141 WNP 143


>gi|168206962|ref|ZP_02632967.1| CHC2 zinc finger domain protein [Clostridium perfringens E str.
           JGS1987]
 gi|170661629|gb|EDT14312.1| CHC2 zinc finger domain protein [Clostridium perfringens E str.
           JGS1987]
          Length = 625

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           +  +   IP+ ++        R   N         C    EKTPS   N  K ++Y F  
Sbjct: 277 LDKIKE-IPLEDVCN------RLGVNTSFKGKKLWCNIRGEKTPSCCINIDKNYWYDFGT 329

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
              GD + F+S +   +  E++ +LA + G+   
Sbjct: 330 SKGGDVIKFVSEVEKINSKEAIYKLADMFGIEPE 363


>gi|254445996|ref|ZP_05059472.1| CHC2 zinc finger, putative [Verrucomicrobiae bacterium DG1235]
 gi|198260304|gb|EDY84612.1| CHC2 zinc finger, putative [Verrucomicrobiae bacterium DG1235]
          Length = 119

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 9/111 (8%)

Query: 1   MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCND 57
           M     +  I+ L   + + +L+ + +   R         Y A  PF     P +   N 
Sbjct: 1   MKKIIKKSSIEALKRQVSLLDLLSEDMQLTRVG-----DYYVAPSPFVP-TNPVTLCVNC 54

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE 108
               + C +    GD + +L       FI +V+ LA   G  L    P   
Sbjct: 55  HVNRWRCTATGKHGDAIEYLKLAYRLPFIAAVEWLAKRYGFRLEYEGPTGA 105


>gi|281426344|ref|ZP_06257257.1| putative mobilizable transposon, excision protein [Prevotella oris
           F0302]
 gi|281399522|gb|EFB30353.1| putative mobilizable transposon, excision protein [Prevotella oris
           F0302]
          Length = 296

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 62/215 (28%), Gaps = 19/215 (8%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I+++   I I++         ++           +W C P  +E TPSF  N  +  +Y 
Sbjct: 3   IQNIKQ-ISITDY------LLQQGYSPARVQGIHFWYCSPLRNESTPSFKVNTERNQWYD 55

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT-DLIRLIEV 123
           F     GD +  +  L  C+  E+++ L     +         E+K      ++I +  +
Sbjct: 56  FGTGEHGDIIDLVRTLQHCTMYEAIELLIGSKQIVHQDFSFGGERKTSKHKLEIISVQSL 115

Query: 124 ATDF---FHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              +   +                       +            D       + +     
Sbjct: 116 TNPYLLRYIAERGVPLSIANRFCSQIRYNNTNRTYYAIGFANDADGWEIRSPYFKG---- 171

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR 214
                    +  G +    ++ F + L +   +  
Sbjct: 172 CIAPKAITTISKGTDVLQIFEGFMDFLSWQTLNPS 206


>gi|294855441|gb|ADF44658.1| DNA primase [Escherichia fergusonii]
          Length = 148

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 68/147 (46%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  GK AFE  
Sbjct: 2   NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           + +S+PL   L+         +TPD RA L       I+ +  + LR Y  Q + ++L  
Sbjct: 62  MEQSMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461
           L    +            +      K 
Sbjct: 122 LDDSQLERLMPKAAESSVSRPVPQLKR 148


>gi|118579553|ref|YP_900803.1| zinc finger, CHC2-family protein [Pelobacter propionicus DSM
          2379]
 gi|118502263|gb|ABK98745.1| zinc finger, CHC2-family protein [Pelobacter propionicus DSM
          2379]
          Length = 277

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 8/100 (8%)

Query: 1  MNYPRDFIKDLLIHIPISNLIGQYVD-WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          M   +   + +L    I  L+ + +       T+ V  +    C +HD+  PS     S 
Sbjct: 1  MGLDK---EKILASTDIPTLVRELLPEMKPVGTDQVLVN----CVYHDDSNPSMSVQLST 53

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
          G + C  C   G     +    G  F  +   +A  AG+ 
Sbjct: 54 GLHNCRGCGTTGTLFDLVMKCRGLDFAAACAWMAERAGLK 93


>gi|221214611|ref|ZP_03587581.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
 gi|221165501|gb|EED97977.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
          Length = 931

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63
           I +L   I + +L    +   R      K  Y    P H++K PS          G  + 
Sbjct: 4   IDELKQRIDLHDL-ADRLGLKR-GRGGNKALYH--SPQHEDKNPSLSIYVNHPKHGTGWR 59

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111
             S  V G  +  +  + G +  ++V+ L    G+PL    P   +++
Sbjct: 60  DHSAGVGGSCIDLVIYVRGGTVADAVRYLHDAYGIPLDRSAPTERREK 107


>gi|226322835|ref|ZP_03798353.1| hypothetical protein COPCOM_00607 [Coprococcus comes ATCC 27758]
 gi|225208816|gb|EEG91170.1| hypothetical protein COPCOM_00607 [Coprococcus comes ATCC 27758]
          Length = 212

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 19/123 (15%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH +K+PS   ++    YYCF C   GD +   + L G    E+  +LA   G+ 
Sbjct: 29  MACCPFHSDKSPSMKLDE---RYYCFGCGATGDAVDLTAKLFGIGLREAAVKLAEDFGLN 85

Query: 100 LPVVDP-----------KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148
                              +K +K +    +++   TD+FH  L    +K+      +  
Sbjct: 86  YDSRQKPSIRPRIREPTPEQKYQKEENHCYKVL---TDYFH--LLREWEKKYAPKQPDEE 140

Query: 149 IDS 151
            + 
Sbjct: 141 WNP 143


>gi|257438341|ref|ZP_05614096.1| DNA primase [Faecalibacterium prausnitzii A2-165]
 gi|257199172|gb|EEU97456.1| DNA primase [Faecalibacterium prausnitzii A2-165]
          Length = 212

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 19/123 (15%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH +K+PS   ++    YYCF C   GD +   + L G    E+  +LA   G+ 
Sbjct: 29  MACCPFHSDKSPSMKLDE---RYYCFGCGATGDAVDLTAKLFGIGLREAAVKLAKDFGLN 85

Query: 100 LPVVDP-----------KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148
                              +K +K +    +++   TD+FH  L    +K+      +  
Sbjct: 86  YDSRQKPSVRPRIREPTPEQKYQKEENHCYKVL---TDYFH--LLREWEKKYAPKQPDEE 140

Query: 149 IDS 151
            + 
Sbjct: 141 WNP 143


>gi|167813644|ref|ZP_02445324.1| hypothetical protein Bpse9_00814 [Burkholderia pseudomallei 91]
          Length = 930

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 8/111 (7%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF- 61
             I +L   I + +L    +   R      K  Y    P H++K+PS          G  
Sbjct: 2   ATIDELKQRIDLHDL-ADRLGLKR-GRGGDKALYH--SPQHEDKSPSLSIYVNHPKHGTG 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
           +   S    G  +  +    G +  ++V+ L    G+PL    P   +++ 
Sbjct: 58  WRDHSADAGGSCIDLVIHARGGTVADAVRYLHDAYGIPLDRPAPAERREKS 108


>gi|134288779|ref|YP_001111042.1| gp11, conserved hypothetical protein [Burkholderia phage phiE202]
 gi|134131992|gb|ABO60740.1| gp11, conserved hypothetical protein [Burkholderia phage phiE202]
          Length = 930

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 8/111 (7%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF- 61
             I +L   I + +L    +   R      K  Y    P H++K+PS          G  
Sbjct: 2   ATIDELKQRIDLHDL-ADRLGLKR-GRGGDKALYH--SPQHEDKSPSLSIYVNHPKHGTG 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
           +   S    G  +  +    G +  ++V+ L    G+PL    P   +++ 
Sbjct: 58  WRDHSADAGGSCIDLVIHARGGTVADAVRYLHDAYGIPLDRPAPAERREKS 108


>gi|53717771|ref|YP_106757.1| hypothetical protein BPSL0130 [Burkholderia pseudomallei K96243]
 gi|52208185|emb|CAH34116.1| conserved hypothetical phage protein [Burkholderia pseudomallei
           K96243]
          Length = 930

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 8/111 (7%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF- 61
             I +L   I + +L    +   R      K  Y    P H++K+PS          G  
Sbjct: 2   ATIDELKQRIDLHDL-ADRLGLKR-GRGGDKALYH--SPQHEDKSPSLSIYVNHPKHGTG 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
           +   S    G  +  +    G +  ++V+ L    G+PL    P   +++ 
Sbjct: 58  WRDHSADAGGSCIDLVIHARGGTVADAVRYLHDAYGIPLDRPAPAERREKS 108


>gi|254197111|ref|ZP_04903534.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
 gi|169653853|gb|EDS86546.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
          Length = 930

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 8/111 (7%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF- 61
             I +L   I + +L    +   R      K  Y    P H++K+PS          G  
Sbjct: 2   ATIDELKQRIDLHDL-ADRLGLKR-GRGGDKALYH--SPQHEDKSPSLSIYVNHPKHGTG 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
           +   S    G  +  +    G +  ++V+ L    G+PL    P   +++ 
Sbjct: 58  WRDHSADAGGSCIDLVIHARGGTVADAVRYLHDAYGIPLDRPAPAERREKS 108


>gi|72537680|ref|YP_293710.1| hypothetical protein BPSphi5223_0004 [Burkholderia phage phi52237]
 gi|72398370|gb|AAZ72605.1| conserved hypothetical phage protein [Burkholderia phage phi52237]
          Length = 930

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 8/111 (7%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF- 61
             I +L   I + +L    +   R      K  Y    P H++K+PS          G  
Sbjct: 2   ATIDELKQRIDLHDL-ADRLGLKR-GRGGDKALYH--SPQHEDKSPSLSIYVNHPKHGTG 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
           +   S    G  +  +    G +  ++V+ L    G+PL    P   +++ 
Sbjct: 58  WRDHSADAGGSCIDLVIHARGGTVADAVRYLHDAYGIPLDRPAPAERREKS 108


>gi|310829517|ref|YP_003961874.1| DNA primase [Eubacterium limosum KIST612]
 gi|308741251|gb|ADO38911.1| DNA primase [Eubacterium limosum KIST612]
          Length = 237

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
           R     +     I      Y +  DR           A CPFH +  PS    D    + 
Sbjct: 6   RSIFDVVREETNIVTAARFYGMAVDRHGR--------ALCPFHSDHHPSLSFKD--NRFT 55

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111
           CF+C  +G  +  +  +   S +E+  +L     + + V     +  +
Sbjct: 56  CFACGARGSVIDLVMQIFHISPLEAAVKLQEDFNLKVEVRGQSHKAND 103


>gi|300214612|gb|ADJ79028.1| DNA primase [Lactobacillus salivarius CECT 5713]
          Length = 210

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 73/219 (33%), Gaps = 16/219 (7%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGKL 476
             +  Y   +  R     +   ++          ++  +  +Q   +Q++ ++ + K ++
Sbjct: 1   MEQDLYLNRLAQRFNVAKENLDSQLRQIREKIFAQRAEKQEEQSYQAQQIPRTVIQKNEV 60

Query: 477 S--KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
               K    E  LL  +++   +       + D  + +   Q +++   + F     +  
Sbjct: 61  QHFSKAEKAERLLLYRMLHDKNVWLRI-NGIPDFNFIHENYQVIYNLSEAYFDTHDEYEV 119

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            +    + E G  +++  L+             +       Q     L+L      L  +
Sbjct: 120 ADFLDFINEDGLRQVVVTLEM-----------GDYADEVSEQEINDCLSLIMSQTPLEDK 168

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            ++++ ++ +   + +  K   L   L  +  +    +S
Sbjct: 169 IKKVQTEMLEAKRQNDTAKITKLTMDLISLLKEQQNAKS 207


>gi|167561041|ref|ZP_02353957.1| hypothetical protein BoklE_00679 [Burkholderia oklahomensis EO147]
          Length = 110

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 8/111 (7%)

Query: 6   DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF- 61
             I +L   I + +L    +   R      +  Y    P H++K+PS          G  
Sbjct: 2   ATIDELKQRIDLHDL-ADRLGLKR-GRGGDRALYH--SPQHEDKSPSLSIYVNHPKHGTG 57

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
           +   S    G  +  +    G +  ++V+ L    G+PL    P   +++ 
Sbjct: 58  WRDHSADAGGSCIDLVIHARGGTVADAVRYLHDAYGIPLDRPAPAERREKS 108


>gi|294855363|gb|ADF44619.1| DNA primase [Escherichia sp. B1147]
          Length = 148

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 67/147 (45%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             ++  +DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +R  GK AFE  
Sbjct: 2   NNVICWYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q + ++L  
Sbjct: 62  MEQAMPLSAFLFNTLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461
           L    +            +      K 
Sbjct: 122 LDDSQLERLMPKAAESGVSRPVPQLKR 148


>gi|312136013|ref|YP_004003351.1| toprim domain-containing protein [Caldicellulosiruptor owensensis
           OL]
 gi|311776064|gb|ADQ05551.1| TOPRIM domain-containing protein [Caldicellulosiruptor owensensis
           OL]
          Length = 367

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 62/404 (15%), Positives = 135/404 (33%), Gaps = 53/404 (13%)

Query: 3   YPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPS---FHCNDS 58
             +   + ++ +  +  L+    V + R             CPFH  +  +      N  
Sbjct: 2   ISKRIERTVIRNTNVVELLENLDVSYKRYGDEVRIV-----CPFH--RNANGYNLSINVK 54

Query: 59  KGFYYCF--SCHVKG-DHLSFLSALLGCSFIE-SVQRLAAIAGVPLPVVDPKIEKKEKIQ 114
           K  + CF   C   G + +  +  ++     E +V+ +A++A + + ++   I K     
Sbjct: 55  KRVFCCFSNGCEKNGYNLVDLVMRIMKTDDRERTVRYMASLANLEIDLLCRNIMKYSYKN 114

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
                            L + +D  L +  + R ++     +          ++     +
Sbjct: 115 KK--------------GLLSFKDSTLSFIREFRTVEEEGEYVVYQESQIREWHNALLESK 160

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
                  +  +       +         ++ +IFP+ S+ G++ A   RTLS+ ++  + 
Sbjct: 161 YPLRYLTEERKLTEWDIENFYLGFDPEEKD-IIFPVYSTEGKLKAVVRRTLSEEKAEYF- 218

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
                ++  K + LY  + A                 + IILVEG  D ++L + G   V
Sbjct: 219 -GKYKVIGAKSECLYGLYEAQGA----------DYDLNKIILVEGVFDAIALHRMGYTAV 267

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGD----DPGLRAAYKAIDLVLCHLIPGNR--- 347
                +        L       I+LC D D    D         + ++      G     
Sbjct: 268 ALLGTSISKYQLKMLYELSPAEIILCLDNDSCKGDDENSGKNGVLRIINQFSKAGFNLDE 327

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391
           ++ + L   +DPD       +  F ++    +P +D    ++  
Sbjct: 328 ISVIQLDGYQDPDEV----PEKEFRRIYENRMPAIDFYLTQQIR 367


>gi|218281845|ref|ZP_03488184.1| hypothetical protein EUBIFOR_00752 [Eubacterium biforme DSM 3989]
 gi|283795126|ref|ZP_06344279.1| DNA primase [Clostridium sp. M62/1]
 gi|218217134|gb|EEC90672.1| hypothetical protein EUBIFOR_00752 [Eubacterium biforme DSM 3989]
 gi|291076770|gb|EFE14134.1| DNA primase [Clostridium sp. M62/1]
          Length = 212

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH +K+PS   ++    YYCF C   GD +   + L G    E+  +LA   G+ 
Sbjct: 29  MACCPFHSDKSPSMKLDE---RYYCFGCGATGDAVDLTAKLFGIGLREAAVKLAEDFGLN 85

Query: 100 LPVVDPKIEKKE 111
                    +  
Sbjct: 86  YDSRQKPSVRPR 97


>gi|210613633|ref|ZP_03289792.1| hypothetical protein CLONEX_01999 [Clostridium nexile DSM 1787]
 gi|210151063|gb|EEA82071.1| hypothetical protein CLONEX_01999 [Clostridium nexile DSM 1787]
          Length = 208

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 19/123 (15%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            A CPFH++K PS   +     ++CF C   GD + F+S L G    E+  ++A   G+ 
Sbjct: 29  MAVCPFHNDKNPSMKLDR---RFHCFGCQADGDAVDFVSRLFGLPSKEAAMKIADDFGIS 85

Query: 100 LPVVDP-----------KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148
                              +K ++ +    +++   +D+FH  L    +K+      +  
Sbjct: 86  YDSRQKPSIRPKIREPTPEQKYQQEENHCYKVL---SDYFH--LLRKWEKQYAPQRTDEV 140

Query: 149 IDS 151
              
Sbjct: 141 WHP 143


>gi|282858524|ref|ZP_06267696.1| CHC2 zinc finger domain protein [Prevotella bivia JCVIHMP010]
 gi|282588709|gb|EFB93842.1| CHC2 zinc finger domain protein [Prevotella bivia JCVIHMP010]
          Length = 296

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 61/215 (28%), Gaps = 19/215 (8%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I+++   I I++         ++           +W C P  +E TPSF  N  +  +Y 
Sbjct: 3   IQNIKQ-ISITDY------LQQQGYSPARIQGIHFWYCSPLRNESTPSFKVNTERNQWYD 55

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT-DLIRLIEV 123
           F     GD +  +  L  C+  E++  L     +         E+K      ++I +  +
Sbjct: 56  FGTGEHGDIIDLVRTLQHCTMYEAIDFLIGSKQIVHQDFSFGGERKTSKHKLEIISVQSL 115

Query: 124 AT----DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
                  +      +                +            D       + +     
Sbjct: 116 TNPYLLRYIAERGISLSIANRFCSEIRYNNTNRTYYAIGFANDADGWEIRSPYFKG---- 171

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR 214
                    +  G +    ++ F + L +   +  
Sbjct: 172 CIAPKAITTISKGTDVLQIFEGFMDFLSWQTLNPS 206


>gi|323527811|ref|YP_004229964.1| Toprim sub domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323384813|gb|ADX56904.1| Toprim sub domain-containing protein [Burkholderia sp. CCGE1001]
          Length = 930

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63
           I++L   I + +L    +   R      K  Y    P H++K+PS          G  + 
Sbjct: 4   IEELKQRIDLHDL-ADRLGLKR-GRGGDKALYH--SPQHEDKSPSLSVYVNHPKHGTGWR 59

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
             S    G  +  +    G +  ++++ L    G+PL   +P   +++ 
Sbjct: 60  DHSADKGGSCIDLVIHARGGTVADALRYLHDAYGIPLDRPEPAERREKS 108


>gi|48696464|ref|YP_024506.1| putative primase [Staphylococcus phage K]
 gi|66394975|ref|YP_240942.1| ORF026 [Staphylococcus phage G1]
 gi|37729158|gb|AAO47525.1| ORF76 [Staphylococcus phage K]
 gi|62636997|gb|AAX92108.1| ORF026 [Staphylococcus phage G1]
 gi|119658112|gb|ABL87147.1| putative primase [Staphylococcus phage 812]
 gi|182627936|gb|ACB89098.1| gp ORF105 [Staphylococcus phage A5W]
          Length = 355

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 113/352 (32%), Gaps = 42/352 (11%)

Query: 32  TNAVKGDYWACCPFHDEKTPSFHC----NDSKGFYYCFSCHVKGDHLSFLSALLGCSFIE 87
                G+   CCPF  EK+  F+     + S G Y+C  C   G+ ++F+      +  +
Sbjct: 15  KENTIGELRYCCPFCGEKSYKFYVKQALDSSNGQYHCKKCDESGNPITFMKTYYNITGKQ 74

Query: 88  SVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145
           +   L +   + +          K       LI ++        H  K     +     +
Sbjct: 75  AFDLLESK-NIDIERAPLLTTNNKDLTESEKLILMLRGV-----HQDKGNTSIKPPRLPE 128

Query: 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR 205
              +    +   ++             L Q   +    +  G     D  +      RN 
Sbjct: 129 GYKLLKDNLNNKEIIPFLKYLKGRGITLEQIINNNIGYVINGSFYKVDGESK--VSLRNS 186

Query: 206 LIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK-NLYNFFGALNYLQKSIRK 264
           +IF    + G    +  R++ K   +K +N+P        K  ++N   A          
Sbjct: 187 IIFFTYDNDGNYQYWNTRSIEKNPYIKSINAPAKQDEVGRKDVIFNLNIARK-------- 238

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKL---SPRIVLCF 321
                   F+++ EG  D L+      +  V++LG  +TE Q++ +         I +  
Sbjct: 239 ------KKFLVITEGVFDALTFH----EYGVATLGKQVTENQIKKIIDYVSIDTSIYIML 288

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
           D D          IDL        N+V FV     ED +           ++
Sbjct: 289 DTDALDNN-----IDLAYKLKTHFNKVYFVPHGD-EDANDMGTRKAFELLKQ 334


>gi|265751714|ref|ZP_06087507.1| TraP protein [Bacteroides sp. 3_1_33FAA]
 gi|263236506|gb|EEZ21976.1| TraP protein [Bacteroides sp. 3_1_33FAA]
          Length = 292

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 10  DLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           D++  +PI+  + +  +    R        + W   P+  E+TPSF  N +K  +Y F  
Sbjct: 7   DIIRQMPIAVFLARLGHEPVRRSGN-----ELWYIAPYRGERTPSFRVNVAKQLWYDFGL 61

Query: 68  HVKGDHLSFLSALLGC-SFIESVQRLAAIAGVPLPVVD 104
              GD  +          F+E V+ +A  A +P+PV +
Sbjct: 62  GKGGDIFTLAGEFARSGDFMEQVKFIAGTANIPMPVPE 99


>gi|237742426|ref|ZP_04572907.1| predicted protein [Fusobacterium sp. 4_1_13]
 gi|229430074|gb|EEO40286.1| predicted protein [Fusobacterium sp. 4_1_13]
          Length = 574

 Score = 75.3 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/359 (11%), Positives = 93/359 (25%), Gaps = 36/359 (10%)

Query: 27  WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL-SALLGCSF 85
             ++  N  K  +    P H++K PS      K    CF+C    D    +       +F
Sbjct: 238 LQKKGIN-TKELFRCISPDHEDKNPSMSFYTKKNKCTCFACGKNYDIFDLVKMEYGLKTF 296

Query: 86  IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145
            E +++        +       +  E     +      + +     L +  +K       
Sbjct: 297 PEQLKK--------VEEFMKNPDLIEDANKTIYSKKNTSIE-----LGSNIEKNKSTSNK 343

Query: 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR 205
           +  +D +     +        Y        K             I  +        F+  
Sbjct: 344 KSVLDPNNPNDIE-RIIKYQNYIKYCMSNLKECDYLTKRGISEKIQKEYHIGYDPNFKYA 402

Query: 206 LIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKD 265
                            R +      +        +FH  +                   
Sbjct: 403 SFNKAIIIPTYYGCLTARNIDDNSKDRLRKLGNAQIFHYDRI------------------ 444

Query: 266 VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDD 325
            + N      +VEG +D LS+ + G + +       +     +L         +    +D
Sbjct: 445 -KENPGKEFYIVEGEIDALSVAEVGKKAIALGSVNEINLLVNKLKKDKFKNKFILMLDND 503

Query: 326 PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
              + A + + + L  +         +L + +DP+ F+    +        +    +  
Sbjct: 504 EIGKKAQEILYIRLKEIGINVE-KSNILGKYKDPNEFLMKDREKFLALFQKKERENLWQ 561


>gi|319654116|ref|ZP_08008206.1| hypothetical protein HMPREF1013_04826 [Bacillus sp. 2_A_57_CT2]
 gi|317394201|gb|EFV74949.1| hypothetical protein HMPREF1013_04826 [Bacillus sp. 2_A_57_CT2]
          Length = 463

 Score = 75.3 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 93/296 (31%), Gaps = 38/296 (12%)

Query: 2   NYPRDFIKDLLIHIPIS---NLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
                 I+ +   + +     ++G     ++   +              E TPS   N +
Sbjct: 3   RISEVTIQKVKE-VDLVFLAEMLGD--PLNKVGHSYFTYRNEG------ENTPSLAINPT 53

Query: 59  KGFYYCFSCHVKG-DHLS-FLSAL-------LGCSFIESVQRLAAIAGVPLPVVDPKIEK 109
           KG +  F+    G D +S F   +        G  FIE+V+++  + G+ +   D +  +
Sbjct: 54  KGIWKDFAGTAGGRDAISYFYYRVKQSNSYPKGMDFIETVEKICELCGITIEYEDGQSRE 113

Query: 110 ----KEKIQTDLIRLIEVA-----TDFFHHSLK--NARDKRLHYYLDERGIDSHAIEMFK 158
               + K +  ++R  + A      + +   LK  +       +  + R I +   ++ +
Sbjct: 114 FKQVEYKPREVIVRASDKAPIERLHEVYSSILKELSLHKSHYMHLKEVRKITAPYAKIRE 173

Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218
                  +       +    +   +       +       Y     R    I     +  
Sbjct: 174 YRSFVQDKKERYLKTKAIKRAAGSLEGIPGFAEMKGQYGLYWSMIGRAGMLIPFRNIRNQ 233

Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFI 274
             G + +            +  +F K       + + + ++KS  + +  ++   +
Sbjct: 234 IAGFQVMYDERPELVTAEGDLRVFMKD------YHSFSIIRKSTGEIIGESNRDQL 283


>gi|169839328|ref|ZP_02872516.1| DNA primase [candidate division TM7 single-cell isolate TM7a]
          Length = 255

 Score = 75.3 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 105/256 (41%), Gaps = 16/256 (6%)

Query: 264 KDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDG 323
                    + ++VEG +DV+S  QAG+  VV++ GTA+T + L+++ + S  I L FD 
Sbjct: 1   AKESIRQHDYAVIVEGNIDVVSSHQAGINYVVATAGTAMTIHHLKIIGRFSKNIRLAFDS 60

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG-EDPDSFIRCYGKTAFEKLIVESLPLV 382
           D  GL A  +AI +       G  ++ + L    +DPD  I+      ++  I    P V
Sbjct: 61  DKAGLAATERAISIAQ---EAGIDLSVISLPDYAKDPDELIQ-RDPKLWQGAIDAYEPAV 116

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
           D + ++  +N   +T   +          I++++D   R +Y + + ++++   +    +
Sbjct: 117 DWILRQYYKNNDISTAAGKRAYTTAGLAVIHNLQDPVERDHYLRKMAEKIETDIEVLRAK 176

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                               + R +     + K ++     E  LL   I +  +     
Sbjct: 177 MKN-----------NSDTEIAHRKVVKVNPQNKSTQSEFELEDNLLALGITNKYVCDLIL 225

Query: 503 QELADIRYDNNELQKL 518
            E  +I   +N+   +
Sbjct: 226 NEPIEIFRGDNQYNLV 241


>gi|168983707|dbj|BAG11732.1| DNA primase [Escherichia coli O55:H7]
 gi|168986103|dbj|BAG11733.1| DNA primase [Escherichia coli O55:H7]
          Length = 148

 Score = 75.3 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 67/147 (45%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             ++ C+DGD  G  AA++A++  L ++  G ++ F+ L   EDPD+ +R  GK AFE  
Sbjct: 2   NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDDEDPDTLVRKEGKEAFEAR 61

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           + +++PL   L+         +TPD RA L       I+ +  + LR Y  Q + ++L  
Sbjct: 62  MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461
           L    +            +      K 
Sbjct: 122 LDDSQLERLMPKAAESGVSRPVPQLKR 148


>gi|315650308|ref|ZP_07903380.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487419|gb|EFU77729.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 901

 Score = 75.3 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 65/222 (29%), Gaps = 16/222 (7%)

Query: 1   MNYPRDFIKDLLI-HIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M      I  L+      S +I +Y        N         CPFHD+K  SF  +   
Sbjct: 1   MRVDEVDIDHLVDYKTEYSRIIPKY---KISGDNLT-----GLCPFHDDKNNSFSVDLKT 52

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
           G + C +    G+  SF + L G    E+ + +    G        K E+ +K +  L+ 
Sbjct: 53  GCWKCHAEDRGGNFTSFYAELNGIDTKEAYKAILKKYG------AYKAEEDKKPEGSLLS 106

Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              VA       L     K       ++                    + R+    K F 
Sbjct: 107 -YSVAQYVLEKRLPEEFLKEQCCLQTKKDKQGIQYLYIPYFNENSDEVTYRKRYGNKQFR 165

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFG 221
            +      + + G+            ++    S    +   G
Sbjct: 166 WKYGAGKDICMYGEWKLEQIRTAGYVVLVEGESDSQSMWYMG 207


>gi|295108179|emb|CBL22132.1| DNA primase (bacterial type) [Ruminococcus obeum A2-162]
          Length = 212

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH +K+PS   ++    YYCF C   GD +   + L G    E+  +LA   G+ 
Sbjct: 29  IACCPFHSDKSPSMKLDE---RYYCFGCGATGDAVDLTAKLFGIGLREAAVKLAEDFGLN 85

Query: 100 LPVVDPKIEKKE 111
                    +  
Sbjct: 86  YDSRQKPSVRPR 97


>gi|313145958|ref|ZP_07808151.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134725|gb|EFR52085.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 297

 Score = 74.9 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I  +   I +++ + + +  +  + N  +  Y A  P+ +E+TPSF  N +K  +Y F  
Sbjct: 10  IDTMRQ-ISLADFLAR-LGHEPVRRNGNELWYRA--PYRNERTPSFRVNVAKQLWYDFGL 65

Query: 68  HVKGDHLSFLSA-LLGCSFIESVQRLAAIAGVPLPV 102
              GD  +     +    F+E V+ +A  A + +  
Sbjct: 66  GKGGDIFTLAGEFIRSGDFMEQVRFIANAANMTVDR 101


>gi|255008239|ref|ZP_05280365.1| hypothetical protein Bfra3_03806 [Bacteroides fragilis 3_1_12]
          Length = 293

 Score = 74.9 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I  +   I +++ + + +  +  + N  +  Y A  P+ +E+TPSF  N +K  +Y F  
Sbjct: 6   IDTMRQ-ISLADFLAR-LGHEPVRRNGNELWYRA--PYRNERTPSFRVNVAKQLWYDFGL 61

Query: 68  HVKGDHLSFLSA-LLGCSFIESVQRLAAIAGVPLPV 102
              GD  +     +    F+E V+ +A  A + +  
Sbjct: 62  GKGGDIFTLAGEFIRSGDFMEQVRFIANAANMTVDR 97


>gi|161521410|ref|YP_001584837.1| zinc finger CHC2-family protein [Burkholderia multivorans ATCC
           17616]
 gi|189352422|ref|YP_001948049.1| probable bacteriophage protein [Burkholderia multivorans ATCC
           17616]
 gi|327198000|ref|YP_004306368.1| gp2 [Burkholderia phage KS5]
 gi|160345460|gb|ABX18545.1| zinc finger CHC2-family protein [Burkholderia multivorans ATCC
           17616]
 gi|189336444|dbj|BAG45513.1| probable bacteriophage protein [Burkholderia multivorans ATCC
           17616]
 gi|310657134|gb|ADP02249.1| gp2 [Burkholderia phage KS5]
          Length = 931

 Score = 74.9 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63
           I +L   I + +L    +   R      K  Y    P H++++PS          G  + 
Sbjct: 4   IDELKQRIDLHDL-ADRLGLKR-GRGGDKALYH--SPQHEDRSPSLSIYVNHPKHGTGWR 59

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111
             S  V G  +  +    G +  ++V+ L    G+PL    P   +++
Sbjct: 60  DHSAGVGGSCIDLVIHARGGTVADAVRYLHDAYGIPLDRPAPAERREK 107


>gi|167724583|ref|ZP_02407819.1| DNA primase [Burkholderia pseudomallei DM98]
          Length = 298

 Score = 74.9 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 104/312 (33%), Gaps = 31/312 (9%)

Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390
           A +A++  L H      + F+ L    DPDS++R +G  AF + +  ++PL   L    T
Sbjct: 2   ARRALEACLPHAADNRTIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEAT 61

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
             +  + P+ RA+     K  +  +    LR        DRLQ  F +         R  
Sbjct: 62  AGKELDQPEGRAKALFDAKPLLQALPANALRAQIMHMFADRLQIPFDEVAALAEVDARIA 121

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
                                      ++ +  E   L  L+ HP I      E      
Sbjct: 122 A---------------PARQAPARNERRRVTESEKRALRNLVMHPRIAAAIDDESVATLR 166

Query: 511 DNNELQKLWSFLFSDFVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGL 562
               + +L+  +               L + +        + E+ +++   D  VRD   
Sbjct: 167 ALPRIGELFDEVIGHARALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQ 226

Query: 563 WSATTEANIVDVRQGYQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
            +  ++A    +R+  +      QA  L  R+     +   + K+     +  E  +   
Sbjct: 227 QNPESDAAQEGLRERERIAGEELQAAVLKMRYDACCDRLNSLSKR--SAPSSEELAEIKD 284

Query: 617 LISILHEVHIQI 628
           L   L ++  ++
Sbjct: 285 LHQNLADMKRRL 296


>gi|255505538|ref|ZP_05346726.3| putative CHC2 zinc finger [Bryantella formatexigens DSM 14469]
 gi|255267119|gb|EET60324.1| putative CHC2 zinc finger [Bryantella formatexigens DSM 14469]
          Length = 916

 Score = 74.9 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%)

Query: 15  IPISNLI------GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           + I  L+        Y+    +K           CPFHD+K  SF  +   G +YCF+  
Sbjct: 5   VNIDQLVDYQTEYSSYI----KKHKITGDRLTGLCPFHDDKNNSFSADLKTGQWYCFAEG 60

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
             G+  +F + L G S  E+ +++    G  L   +P  +K++    +   L E A   F
Sbjct: 61  RGGNFTTFYAELNGISTDEAYKQILDKYG-ALRAPEPPQKKEKTPGPESYSLEEYA---F 116

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
           +  L     K +      +  D  +           +    R+    K F         L
Sbjct: 117 NKRLPVEFLKEVCGASTGKDKDKKSFLKLPYFNEEKTDPIFRKRYAHKEFRWSWGSSGKL 176

Query: 189 LIDGDNS 195
           ++ GD  
Sbjct: 177 ILYGDWR 183


>gi|170731521|ref|YP_001763468.1| zinc finger CHC2-family protein [Burkholderia cenocepacia MC0-3]
 gi|169814763|gb|ACA89346.1| zinc finger CHC2-family protein [Burkholderia cenocepacia MC0-3]
          Length = 930

 Score = 74.9 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63
           I +L   I + +L    +   R      +  Y    P HD+K+PS          G  + 
Sbjct: 4   IDELKQRIDLHDL-ADRLGLKR-GRGGDRALYH--SPQHDDKSPSLSIYVNHPKHGTGWR 59

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111
             S  V G  +  +    G +  ++V+ L    G+PL    P   +++
Sbjct: 60  DHSADVGGSCIDLVIHARGGTVADAVRYLHDAYGIPLDRQAPAERREK 107


>gi|9625488|ref|NP_039722.1| predicted 14.5Kd protein [Mycobacterium phage L5]
 gi|465296|sp|Q05271|VG58_BPML5 RecName: Full=Gene 58 protein; AltName: Full=Gp58
 gi|15914|emb|CAA79434.1| gene 58 [Mycobacterium phage L5]
          Length = 130

 Score = 74.9 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAI--AG 97
              CPFH ++TPS   +     Y C +C V+GD +S +      +F E+ +R+A     G
Sbjct: 28  KCLCPFHGDETPSAAVSYDLQGYNCMACGVRGDVISIIRHEEEVTFAEA-KRIAENLSVG 86

Query: 98  VPLPVVDPKIEKKEKI 113
             +PV      K  + 
Sbjct: 87  GNVPVQRKPARKPSRR 102


>gi|238909187|ref|YP_002939654.1| DNA primase [Eubacterium eligens ATCC 27750]
 gi|238873424|gb|ACR73133.1| DNA primase [Eubacterium eligens ATCC 27750]
          Length = 341

 Score = 74.5 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 125/378 (33%), Gaps = 78/378 (20%)

Query: 14  HIPISNLIGQ-----YVDWDRRK----TNAVKGDYWACCPFH---DEKTPSF------HC 55
             PI   + Q      +                D    CPFH    E  PS         
Sbjct: 6   KTPIVATVEQVLKDLKLQLYGAGLLKEIKNTGSDLMCTCPFHANGKEHNPSCGVLLQQKV 65

Query: 56  NDSK----GFYYCFSCHVKGDHLSFLSALLGCSFI-ESVQRLAAIAGVPLPVVDPKIEKK 110
              K    G  +C++C    D   F++ LLG S   E  + L           +      
Sbjct: 66  TKDKTYEAGTVHCYTCGYTADLPQFVADLLGLSSPVEGFKWLVNQYNYQTEERELPDLDM 125

Query: 111 EKIQTDLIRLIEVA-TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169
            +       ++E +    +  +L   + +    YL +R I +  +E ++LG+ P+ +   
Sbjct: 126 YRGSIAKSSVLEESLVKQYTQNLL--QSEEACRYLHKRRIANWVLEAYELGFDPEDKT-- 181

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
                                               ++FP+R   G+VI + GR+++   
Sbjct: 182 ------------------------------------VLFPVRGMDGKVIFYKGRSIAGK- 204

Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289
              + N+ E     K   ++        +          +    + + E  +D LSL   
Sbjct: 205 --HFYNAKEV---DKTSVVFGL----WEILNGSFSWGTADQIEEVWITESEIDALSLISY 255

Query: 290 GVQNVVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           GV   V+ +G+ ++E Q + L      R VL  D DD G + A +   L+         +
Sbjct: 256 GVP-AVAIMGSHISEEQCKELERTPFRRFVLATDNDDAGRKGASQIKRLL--IPKGFRFI 312

Query: 349 NFVLLSRGEDPDSFIRCY 366
           N    +  +D +  ++ Y
Sbjct: 313 NLKWHTSLKDINDLVKEY 330


>gi|295102579|emb|CBL00124.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii L2-6]
          Length = 182

 Score = 74.5 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
           CCPFH +  PS   ND+  +YYCF C   GD +   + L   +  ++ ++L    G+   
Sbjct: 13  CCPFHSDNHPSMMLNDT--YYYCFGCGANGDAIDLTAKLFDLNPRQAAEKLIHDFGIDPD 70

Query: 102 VVDPKIEKKEKIQTDLIR 119
                       +  L  
Sbjct: 71  KPPANAIALPPPKRGLTD 88


>gi|254304164|ref|ZP_04971522.1| possible primase/helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324356|gb|EDK89606.1| possible primase/helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 922

 Score = 74.5 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 33/181 (18%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I++L         +G+Y+       N     +    P H++K PS           CF+
Sbjct: 6   TIEELKN------FLGEYLVLK--GINTSSV-FRCFSPTHEDKHPSMSFYKKGNICNCFA 56

Query: 67  CHVKGDHLSFL-SALLGCSFIESVQRLAAIA---------GVPLP-------VVDPKIEK 109
           C  K +  S +        F E  +++  +           V +         ++   +K
Sbjct: 57  CGEKYNIFSLVGMEYNLKGFKEQKEKVIELYKNKELIQDINVTIYSKKNTKVELESAPQK 116

Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169
           KEK +     L     D+++   K    +    YL  RGI     + + +GY P+ + + 
Sbjct: 117 KEKKERKYPEL-----DYYYLECKKRISETD--YLQRRGISIEVQDRYNIGYDPNFKNNT 169

Query: 170 R 170
            
Sbjct: 170 W 170


>gi|295101832|emb|CBK99377.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii L2-6]
          Length = 182

 Score = 74.2 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
           CCPFH +  PS   ND+  +YYCF+C   GD +   + L   +  ++ ++LA+  G+   
Sbjct: 13  CCPFHSDNDPSMKLNDT--YYYCFACGANGDAIDLTAKLFDLNPRQAAEKLASDFGLDPD 70

Query: 102 VVDPKIEKKEKIQTDLIR 119
                       +  L  
Sbjct: 71  KPPANAIALPPPKRGLTD 88


>gi|282879955|ref|ZP_06288679.1| mobilizable transposon, excision family protein [Prevotella
          timonensis CRIS 5C-B1]
 gi|281306197|gb|EFA98233.1| mobilizable transposon, excision family protein [Prevotella
          timonensis CRIS 5C-B1]
          Length = 228

 Score = 74.2 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 8  IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
          I+++   I I++         ++           +W C P  +E TPSF  N  +  +Y 
Sbjct: 3  IQNIKQ-ISITDY------LQQQGYSPARVQGIHFWYCSPLRNESTPSFKVNTERNQWYD 55

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRL 92
          F     GD +  +  L  C+  E++  L
Sbjct: 56 FGTGEYGDIIDLVRTLQHCTMYEAIDFL 83


>gi|329955471|ref|ZP_08296379.1| hypothetical protein HMPREF9445_01226 [Bacteroides clarus YIT
           12056]
 gi|328525874|gb|EGF52898.1| hypothetical protein HMPREF9445_01226 [Bacteroides clarus YIT
           12056]
          Length = 286

 Score = 74.2 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 96/284 (33%), Gaps = 19/284 (6%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           ++ +   I +   +    ++   R+  +      W   PF +E+T SF  +  +  ++ F
Sbjct: 3   LEQVR-RISLVGFLEDLGHMPVSRKGNDV-----WFRSPFRNERTASFKVDTQRNVWFDF 56

Query: 66  SCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
                GD       L G + F+E ++ L+  +G+ LP+   +  KK    +    +    
Sbjct: 57  GLGKGGDIFHLAGELTGSTGFMEQLEFLSGKSGI-LPLRPLQERKKIPRVSGFEDV--KV 113

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
           T+  H +LK+   +R      +  I     +    G      +++    R  G+     +
Sbjct: 114 TELSHEALKSYLKERGI----DPAIAGRFCKEVAYGIRGKRYFAIGFMNRSGGYELRNPM 169

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
             G +   D S  S    +  +          + A   RT  K E    LNS    L   
Sbjct: 170 FKGCISPKDISCVSLSGKKQDMCCVFEGFVDFLSALVLRT-VKDEDCLVLNSVSN-LERS 227

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
              L  +     +L +  R  +    +  I       D   L  
Sbjct: 228 YAVLEGYGKIRCFLDR-DRAGITALETLNIHFGNKVTDCSGLYD 270


>gi|207723754|ref|YP_002254152.1| dna primase protein (partial sequence c terminus) [Ralstonia
           solanacearum MolK2]
 gi|206588958|emb|CAQ35920.1| dna primase protein (partial sequence c terminus) [Ralstonia
           solanacearum MolK2]
          Length = 318

 Score = 74.2 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 64/327 (19%), Positives = 117/327 (35%), Gaps = 29/327 (8%)

Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
            R   +    ++  FDGD  G RAA +A++  L H+     V F+ L    DPD+FIR  
Sbjct: 15  CRSSLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKVVKFLFLPPEHDPDTFIREE 74

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
           G  AF   +  ++PL   L +  +E+     P+ RA  +   K  ++ +    LR    +
Sbjct: 75  GTEAFAAEVRNAMPLSRFLLQAVSEDLDLRQPEGRARAQYEAKPLLSAMPPGGLRLQIVR 134

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + +         I    G      +  R   ++    R   ++L            E  
Sbjct: 135 GLAEMTG-TTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTAL------------EQK 181

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +L  L+ +PA+           +    EL   + L   L                +RL +
Sbjct: 182 VLRLLMRYPALAAR-LDADTRAQLTAPELPQGEVLSGLLTECDAVGPEMHFGAFVERLGQ 240

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
             + E    L   V D  +     E    +     Q+ LA       L R+ + +++++ 
Sbjct: 241 TPYAEAFAGLRVAVLDDDIEL---EPATQEFDVAVQKMLA-----EPLRRELDMLQRKM- 291

Query: 604 QVTAKGEAEKTAILISILH-EVHIQIH 629
           +     +A+K    +  L  E+  +  
Sbjct: 292 EGGHASDADK--ERLRWLVSEISRRRR 316


>gi|327197754|ref|YP_004301452.1| gp119 [Brochothrix phage A9]
 gi|299810354|gb|ADJ53153.1| gp119 [Brochothrix phage A9]
          Length = 351

 Score = 73.8 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 106/331 (32%), Gaps = 42/331 (12%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102
           CPF  +     + +     ++CF C   G+ +SF   +   S+ ++++ L          
Sbjct: 24  CPFCADDKRRLYLDTESNVWHCFHCDKAGNSVSFTKEVFEVSYRDALEIL--------KT 75

Query: 103 VD-PKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGY 161
            D     +     +     +  A   F    +N  ++     +          +     +
Sbjct: 76  FDCEPGREHVAYFSKYGDSLTDAEKLFLAMHENDEEEETVEVVKTCPAFPVGYKPIIPNF 135

Query: 162 APDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD----RFRNRLIFPIRSSRGQV 217
                    E+L  +  S E +    +    + +           RN ++FP  +  G  
Sbjct: 136 NEPEARPFIEYLANRNVSYEDVERHMMCYVVEGTVQRVGKTPLNLRNHIVFPTFNDDGSA 195

Query: 218 IAFGGRTLSKGESVKYLNSPETIL-FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIIL 276
             +  R++     VK  N+P     + K  +++N   A                +  +I+
Sbjct: 196 RYWNTRSIEPDAYVKAYNAPSEPHEYGKRDSIFNINQA--------------QYTDKLII 241

Query: 277 VEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVLCFDGDDPGLRAA 331
            EG  D L+       + +++ G  +T+ Q+ L+        + ++ +  D D       
Sbjct: 242 CEGVFDALTCG----PSGIATFGKQVTDEQVLLIEQAIAKNPTLKVYIFLDRDAVEQGD- 296

Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
                L    L     V  V  + G D +  
Sbjct: 297 ----KLAKQLLNTTQNVYLVNNTMGGDANDL 323


>gi|288801431|ref|ZP_06406884.1| mobilizable transposon, excision protein [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288331642|gb|EFC70127.1| mobilizable transposon, excision protein [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 294

 Score = 73.8 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 10/111 (9%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I+ +         I  Y+   ++           YW   P  +E TPSF  N  +  +Y 
Sbjct: 3   IQHIKQIA-----ITDYMQ--QQGYAPARVQGIHYWYYSPLRNESTPSFKVNTERNQWYD 55

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT 115
           F     GD +  + AL  C+  E+++ L+    V         ++K   + 
Sbjct: 56  FGSGEHGDIIDLVCALHRCTISEAIRLLSGAKQVAHQEFSFGGKRKFSERK 106


>gi|192824234|ref|YP_001994875.1| gp58 [Mycobacterium phage Pukovnik]
 gi|190610464|gb|ACE79984.1| gp58 [Mycobacterium phage Pukovnik]
          Length = 133

 Score = 73.8 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 16  PISNLIGQYVD-WDRRKTNAVKGDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDH 73
           PI+ +I +Y   W+         ++    CPFH ++TPS   +     + C +C+V+GD 
Sbjct: 9   PIAQVINRYYPDWE---APPDHQEWNKCLCPFHGDETPSAAVSYDLDGFNCMACNVRGDV 65

Query: 74  LSFLSALLGCSFIESVQRLAAI--AGVPLPVVDPKIEKKEKI 113
           +S +    G +F+ + +R+A     G+ +P+      K  + 
Sbjct: 66  ISIIRHEEGVNFVTA-KRIAEEISVGLNVPLQGKPQRKPSRR 106


>gi|66391278|ref|YP_238591.1| ORF023 [Staphylococcus phage Twort]
 gi|62637208|gb|AAX92319.1| ORF023 [Staphylococcus phage Twort]
          Length = 353

 Score = 73.8 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 120/356 (33%), Gaps = 41/356 (11%)

Query: 33  NAVKGDYWACCPFHDEKTPSFHCND----SKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88
               G+Y  CCPF  E+   F+  D      G Y+C  C   G+ ++F+      S  ++
Sbjct: 15  KINNGEYQYCCPFCGEQKYKFYVKDSLQSDNGLYHCKKCDATGNPITFMKGYYSVSAKQA 74

Query: 89  VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148
           +  L     +    + P      ++      ++ +         +  +  RL        
Sbjct: 75  IDLLETK-NITF-EISPLDNYSNELSESDKLILHLRKKNHKQETRPTKPPRLPIGFKYLK 132

Query: 149 IDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208
            +    E +   Y   +R    + + +        I          +       RN +IF
Sbjct: 133 DNLQNKESYPFLYYLKNRGITLDQIIEHN------IAYVTDGYFYKTNGEKASLRNSVIF 186

Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL-FHKGKNLYNFFGALNYLQKSIRKDVR 267
               + G+   +  R++     +K +N+P     + +   ++NF  A             
Sbjct: 187 FTYDNNGKYKYWNTRSIEPNPYLKSINAPSKEQEYARKNCIFNFNVAR------------ 234

Query: 268 RNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR---IVLCFDGD 324
             +   +I+ EG  D L+  ++     V++ G  +T+ QL  + + + +   I +  D D
Sbjct: 235 --NERVMIITEGVFDALTFGKS----GVATFGKQVTQSQLDQIIQHTNKDTIIYIMLDSD 288

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380
                       + L   +  +   FV+    ED +   +       ++  + + P
Sbjct: 289 ALTNN-------IKLARRLHEHFTTFVVPHGVEDANDMGKEKAVKVLKENRILATP 337


>gi|298383622|ref|ZP_06993183.1| mobilizable transposon, excision protein [Bacteroides sp. 1_1_14]
 gi|298263226|gb|EFI06089.1| mobilizable transposon, excision protein [Bacteroides sp. 1_1_14]
          Length = 300

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 15/99 (15%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I  +   +P+++ + +  +    R        + W   P+  E+TPSF  N +K  +Y F
Sbjct: 6   IDAVR-RMPLADFLARLGHEPVRRSGN-----ELWYLAPYRGERTPSFRVNVAKQLWYDF 59

Query: 66  SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100
                GD  +    FL       F++  + +A  A + +
Sbjct: 60  GLGKGGDIFTLAGEFLQ---SDDFMKQAKFIAEAANMTV 95


>gi|78098686|gb|ABB20644.1| DnaG [Bifidobacterium choerinum]
          Length = 123

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R         F  GYAP    +L  HL  KG++++++++AGL   G      YD
Sbjct: 3   RQLLGGRDFSREDCARFGCGYAPQGWDNLVRHLSGKGYTQQEMLDAGLARQGQR--GVYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R  +PIR S G+ + FG R L   + +  KY+N+P+T L+HK + LY    A + +
Sbjct: 61  YFRGRATWPIRDSTGRTLGFGARKLYDDDQIGAKYINTPDTQLYHKNQVLYGIDLAKDAI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|328952266|ref|YP_004369600.1| P4 alpha zinc-binding domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328452590|gb|AEB08419.1| P4 alpha zinc-binding domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 354

 Score = 73.4 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 102/363 (28%), Gaps = 68/363 (18%)

Query: 26  DWDRRKTNAVKGDYWACCPFH--DEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC 83
           +  +        +Y   CP+   +++   F      G Y+C  C  KGD + +L    G 
Sbjct: 12  ELKKV-ATTKGVEYAGACPWCGGNDR---FRVWPETGRYWCRGCGKKGDVIQYLRDKRGL 67

Query: 84  SFIESVQ------RL-AAIAGVPLPVVDPKIEKK--------EKIQTDL--IRLIEVATD 126
           SF ++ +      +L    AG   P    +   +        +   + L   +  E A  
Sbjct: 68  SFPDACRVAGREDKLNGGRAGGRGPSTGARSAARPTEGPGPWKPKTSSLPGEQWQEQAGK 127

Query: 127 FFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEA 186
              ++     +     YL+ RG+    I+  +LG  P  +Y  R                
Sbjct: 128 LVEYA-AGKLNSDTWAYLNGRGLADDTIQARRLGLLPAEKYVKRGPWG------------ 174

Query: 187 GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK 246
            L           D +    +       G+V     R     E   +  S   +      
Sbjct: 175 -LPKQLTQHDREKDLWLPAGVVIPYFIGGKVARVRIRRQEAVEDRYWNVSGSYMG----- 228

Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN---VVSSLGTALT 303
                              V       II+VE  +D   L Q        V      +  
Sbjct: 229 -----------------PMVLGPEGDVIIVVESELDGFLLAQDCGDMAGVVALGNAQSKP 271

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           +     +   S  I++  D D  G  A+++                      G+DP    
Sbjct: 272 DTGSAAILAKSKLILVALDADQAGAVASWQWWLKTFTQ------ARRWPPVGGKDPGEMW 325

Query: 364 RCY 366
           + +
Sbjct: 326 QAW 328


>gi|251778782|ref|ZP_04821702.1| DNA primase related protein [Clostridium botulinum E1 str. 'BoNT
          E Beluga']
 gi|243083097|gb|EES48987.1| DNA primase related protein [Clostridium botulinum E1 str. 'BoNT
          E Beluga']
          Length = 866

 Score = 73.4 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC--NDSKGFYY--CFSC 67
          L  I +  LI Q            K  Y   CPFH+EKTPS        +  Y   C+ C
Sbjct: 4  LQDIDLKELIEQ-----ETGEKFNKEGYI-KCPFHNEKTPSMSIKFFPDRNKYKFMCWGC 57

Query: 68 HVKGDHLSFLSALLGCSFIESVQRL 92
          + +GD L F++     ++  + + L
Sbjct: 58 NEQGDALDFVTKFKRLNYKSAREYL 82


>gi|78098688|gb|ABB20645.1| DnaG [Bifidobacterium merycicum]
          Length = 123

 Score = 73.4 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R       E F  GYAP    +L  HL  +GF+++++++AGL   G      YD
Sbjct: 3   RKLLGGRIFTQADCERFGCGYAPQGWDNLVRHLASQGFTQQEMLDAGLARQGQR--GVYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L + + +  KY+N+P+T L+HK + LY    A   +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINTPDTQLYHKNQVLYGIDLAKQAI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|325300217|ref|YP_004260134.1| hypothetical protein Bacsa_3133 [Bacteroides salanitronis DSM
           18170]
 gi|324319770|gb|ADY37661.1| hypothetical protein Bacsa_3133 [Bacteroides salanitronis DSM
           18170]
          Length = 286

 Score = 73.4 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 65/209 (31%), Gaps = 17/209 (8%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           ++ +   I +   +    ++   R+  +      W   PF +E+T SF  +  +  ++ F
Sbjct: 3   LEQIR-RISLVGFLEDLGHMPVSRKGNDV-----WFRSPFRNERTASFKVDTQRNVWFDF 56

Query: 66  SCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL---- 120
                GD       L G + F+E ++ L+  +G+ LP+   +  KK    +    +    
Sbjct: 57  GLGKGGDIFHLAGELTGSTGFMEQLEFLSGKSGI-LPLRPLQERKKIPRVSGFEDVKVTE 115

Query: 121 --IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E    +      +             GI                        +    
Sbjct: 116 LNHEALKAYLKERGIDPAIAGRFCKEVAYGIRGKRYFAIGFMNRSGGYELRNPMFKGC-I 174

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLI 207
           S + I    L     ++   ++ F + L 
Sbjct: 175 SPKDISCVSLSGKKQDTCCVFEGFIDFLS 203


>gi|39939171|ref|NP_950937.1| DNA primase [Onion yellows phytoplasma OY-M]
 gi|39722280|dbj|BAD04770.1| DNA primase [Onion yellows phytoplasma OY-M]
          Length = 441

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 87/439 (19%), Positives = 165/439 (37%), Gaps = 76/439 (17%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRK--TNAVKGDYWACCPFHDEKTPS-FHCND 57
           MNY ++ IK +    P+S      V   +    +      Y   CP H  + P+      
Sbjct: 1   MNY-QNKIKHIQTQFPMS------VLLKKLNIISPNFNIKYRFPCPIHQGQNPTCCQITS 53

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQR------------LAAIAGVPL---- 100
                +C+ C    D +     + G  +F  +++R            L     +      
Sbjct: 54  DNKI-HCWKCCCDFDIIDVYMEIRGIKTFNLALERINNFMQTQEFKTLIEQQNLTPNSLT 112

Query: 101 --------------PVVDPK-IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLH---- 141
                         P  + +   KK ++  ++  L     D++++ L + R+   H    
Sbjct: 113 NPFKYQYHPKNASNPTDEKEINAKKTQLFKEISPLFNQIRDYYNYLLTSNRNNESHLGLE 172

Query: 142 YYLDERGIDSHAIEMFKLGYAPDS----RYSLREHLRQKGFSEEKIIEAGLLIDGDNS-- 195
           Y   +R ++   I+ FKLGYAP S     + L  + ++K     K++E G + +  N   
Sbjct: 173 YLTQKRKLNLKTIQEFKLGYAPLSDKPLSFRLINYCKKKNIDITKLVEYGFIKEKINQKD 232

Query: 196 -ATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLNSPETILFHKGKNLY 249
               +D F   +I PI +   +   F           + +     N  +T  FH     Y
Sbjct: 233 AKYYHDTFHGSVIIPIENGYKKTFHFYQNNFREVSYFQPKYKSLNNFSQTNTFHFS---Y 289

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQL 307
            FF AL Y++           +  II+ EG+ DV+S  Q  ++NV   +     L++ QL
Sbjct: 290 RFFEALPYIK----------QTKTIIIHEGFFDVISCYQNNIKNVAGLICVTQLLSQSQL 339

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIRC 365
            +L K + ++++  D D+ G + +      +    I       +       +D D  +R 
Sbjct: 340 EILKKENIKVIIALDNDETGQKRSEALGIQLKEANIIYEIRRILPPYDKTCKDVDDLLRQ 399

Query: 366 YGKTAFEKLIVESLPLVDM 384
           +GK A++K  ++     + 
Sbjct: 400 FGKQAYQKCFLDPYITYEE 418


>gi|301058401|ref|ZP_07199422.1| zinc-binding domain of primase-helicase [delta proteobacterium
           NaphS2]
 gi|300447457|gb|EFK11201.1| zinc-binding domain of primase-helicase [delta proteobacterium
           NaphS2]
          Length = 358

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 62/373 (16%), Positives = 111/373 (29%), Gaps = 58/373 (15%)

Query: 16  PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS----KGFYYCFSCHVKG 71
            + NL+ +Y +  +  ++   G+Y + CP     T  FH         G ++C  C   G
Sbjct: 3   NVLNLVRKYCEPKKV-SSTKGGEYHSPCPGCGG-TDRFHVWPEQNEGNGSWWCRQCGRGG 60

Query: 72  DHLSFLSALLGCSFIESVQRL--AAIAGVPLPVVDPKIEKKEKIQTDLIR---------- 119
           D++ FL    G  + E+ +RL  +  A V       K + +   +    +          
Sbjct: 61  DNIQFLREFEGLGYREACERLDISPRA-VDTSYTPLKPQMQRTERKQTWKPDPASPPPSE 119

Query: 120 -LIEVATDF----FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             +  A  F    F + +    D+ +  +L  RGID   I+ F +G+ P          R
Sbjct: 120 VWLRKAATFSIWAFENLMNMDPDEGIKGWLARRGIDEFVIKHFGIGWNPGKGGKDLFRPR 179

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
                       GL  +              LI P+ S          R   + +  +Y 
Sbjct: 180 ---------ESWGLPTEFKEDLKKKLWIPMGLIIPMLSDDVPPKVHRIRFRREKDDPRYY 230

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
             P +        +     AL   +               ++VE  +D + +  A  +  
Sbjct: 231 VLPGSS-------MDCLVEALPGARA-------------YVVVESELDAMMIFFAAKKAR 270

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL- 353
           +     AL           +    L  D         Y             N    +   
Sbjct: 271 LPVGVVALGNASR---KPEAKTARLLRDVPVILNALDYDKAGRNQNEWWAENFPRTIRWP 327

Query: 354 -SRGEDPDSFIRC 365
              G+DP    + 
Sbjct: 328 VPVGKDPGEAFQK 340


>gi|198275478|ref|ZP_03208009.1| hypothetical protein BACPLE_01643 [Bacteroides plebeius DSM 17135]
 gi|198271107|gb|EDY95377.1| hypothetical protein BACPLE_01643 [Bacteroides plebeius DSM 17135]
          Length = 286

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 65/209 (31%), Gaps = 17/209 (8%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           ++ +   I +   +    ++   R+  +      W   PF +E+T SF  +  +  ++ F
Sbjct: 3   LEQIR-RISLVGFLEDLGHMPVSRKGNDV-----WFRSPFRNERTASFKVDTQRNVWFDF 56

Query: 66  SCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL---- 120
                GD       L G + F+E ++ L+  +G+ LP+   +  KK    +    +    
Sbjct: 57  GLGKGGDIFHLAGELTGSTGFMEQLEFLSGKSGI-LPLRPLQERKKIPRVSGFEDVKVTE 115

Query: 121 --IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E    +      +             GI                        +    
Sbjct: 116 LSHEALKGYLKERGIDPAIAGRFCKEVAYGIRGKRYFAIGFMNRSGGYELRNPMFKGC-I 174

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLI 207
           S + I    L     ++   ++ F + L 
Sbjct: 175 SPKDISCVSLSGKKQDTCCVFEGFVDFLS 203


>gi|237727371|ref|ZP_04557852.1| TraP [Bacteroides sp. D4]
 gi|255008823|ref|ZP_05280949.1| hypothetical protein Bfra3_06772 [Bacteroides fragilis 3_1_12]
 gi|313146567|ref|ZP_07808760.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|229434227|gb|EEO44304.1| TraP [Bacteroides dorei 5_1_36/D4]
 gi|313135334|gb|EFR52694.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 286

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 94/284 (33%), Gaps = 19/284 (6%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           ++ +   I +   +    +V   R+  +      W   PF +E+T SF  +  +  ++ F
Sbjct: 3   LEQIRQ-ISLVGFLEGMGHVPVSRKGNDV-----WFRSPFRNERTASFKVDTQRNVWFDF 56

Query: 66  SCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
                GD       L G + F+E ++ L+  +G+ LP+   +  KK    +    +    
Sbjct: 57  GIGKGGDIFHLAGELTGSTGFMEQLEFLSGKSGI-LPLRPLQERKKIPRVSGFEDV--KV 113

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
           T+  H +LK    +R      +  I     +    G      +++    R  G+     +
Sbjct: 114 TELSHEALKGYLKERGI----DPAIAGRFCKEVAYGIRGKRYFAIGFMNRSGGYELRNPM 169

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
             G +   D S  S    +             + A   RT  + E    LNS    L   
Sbjct: 170 FKGCISPKDISCVSLSGKKQDTCCVFEGFIDFLSALVLRT-VEDEDCLVLNSVSN-LERS 227

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
              L  +     +L +  R  +    +  I       D   L  
Sbjct: 228 YAVLEGYGKIRCFLDR-DRAGITALETLTIHFGNKVTDCSGLYD 270


>gi|255969572|gb|ACU45417.1| DNA primase [Peanut witches'-broom phytoplasma]
          Length = 426

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 85/405 (20%), Positives = 145/405 (35%), Gaps = 67/405 (16%)

Query: 25  VDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLG 82
           V   + K        ++   CP H  + P+     S    +C+ C    D +    A+  
Sbjct: 3   VLLKKLKILPQNFNINHRFPCPLHQGQNPTCCHFTSTNKIHCWKCGKDYDIVDVYLAIRQ 62

Query: 83  C-SFIESVQRLAAIAG--------------------------VPLPVVDPKIEKK-EKIQ 114
             SF E++QR+                                PL    P  E+K    +
Sbjct: 63  IKSFHEAIQRIERFMNSREFKTLIHQEKAITKTTPNPWQQPSHPLKPKQPIDEQKINNKK 122

Query: 115 TDLIR----LIEVATDFFHHSLKNARDKRLH----YYLDERGIDSHAIEMFKLGY----- 161
             L +    L     D++H+ L   R+        Y   +R +    I+ FKLGY     
Sbjct: 123 QQLFKEISPLFNQIRDYYHYLLTANRNNESQPGLTYLTQKRKLTLETIKEFKLGYAPLSD 182

Query: 162 APDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDR--FRNRLIFPIRSSRGQVIA 219
            P S   L    +QK   ++ +    +          Y    F   +I PI +   Q   
Sbjct: 183 KPLSFRFLNYCQKQKINLDQLLEYGLIKAKTSRQGKKYVHDTFHGSIIIPIENGYQQTFH 242

Query: 220 FGGRTL-----SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFI 274
           F           + +     N  +T  FH     Y FF AL Y++K+            +
Sbjct: 243 FYQNHFREVSYFQPKYQALTNFSQTPTFHFS---YRFFAALPYIKKTKI----------L 289

Query: 275 ILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAY 332
           I+ EG+ DV+S  Q  ++NVV  +  A  L++ QL ++ K   ++++  D D+ G + + 
Sbjct: 290 IIHEGFFDVISCWQNNIKNVVGLICVAQLLSQSQLEIIKKEKIKVIIALDNDETGQKRSE 349

Query: 333 KAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIRCYGKTAFEKLI 375
              + +    IP      +       +D D  +R YGK  ++K  
Sbjct: 350 VFGEQLTSQQIPYEIRRILPPYDRTCKDVDDLLRQYGKAVYQKCF 394


>gi|270295274|ref|ZP_06201475.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|282877626|ref|ZP_06286441.1| CHC2 zinc finger containing protein [Prevotella buccalis ATCC
           35310]
 gi|270274521|gb|EFA20382.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|281300198|gb|EFA92552.1| CHC2 zinc finger containing protein [Prevotella buccalis ATCC
           35310]
          Length = 289

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 15/99 (15%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I  +   +P+++ + +  +    R        + W   P+  E+TPSF  N +K  +Y F
Sbjct: 6   IDAVR-RMPLADFLARLGHEPVRRSGN-----ELWYLAPYRGERTPSFRVNVAKQLWYDF 59

Query: 66  SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100
                GD  +    FL       F    + +A  A + +
Sbjct: 60  GLGKGGDIFTLAGEFLQ---SDDFRTQAKFIAEAANMTV 95


>gi|298385939|ref|ZP_06995496.1| mobilizable transposon, excision protein [Bacteroides sp. 1_1_14]
 gi|298261167|gb|EFI04034.1| mobilizable transposon, excision protein [Bacteroides sp. 1_1_14]
          Length = 277

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I+++   I IS+ +    Y   +++        +W   P H E+T SF  + +K  +Y 
Sbjct: 2  TIQEVKT-IQISDFLADKGYKPINKKG-----YKWWYLSPLHTEQTASFKVDLNKNLWYD 55

Query: 65 FSCHVKGDHLSFLS---ALLGCS 84
          F     G+ +            S
Sbjct: 56 FGLGKGGNIIDLAMALFHTQNIS 78


>gi|78098680|gb|ABB20641.1| DnaG [Bifidobacterium dentium]
          Length = 123

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              LD R       + F  GYAP    +L  HL  KGF+++++++AGL   G      YD
Sbjct: 3   RKLLDGRNFSQADCQRFGCGYAPQGWDNLVRHLAGKGFTQKEMLDAGLARQG--QHGVYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L + +  + KY+N+P+T L+ K + LY    A + +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARKLYEDDAINAKYINTPDTQLYRKNQVLYGIDMAKSAI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|269127674|ref|YP_003301044.1| DNA primase catalytic core domain-containing protein
           [Thermomonospora curvata DSM 43183]
 gi|268312632|gb|ACY99006.1| DNA primase catalytic core domain protein [Thermomonospora curvata
           DSM 43183]
          Length = 555

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 82/261 (31%), Positives = 115/261 (44%), Gaps = 27/261 (10%)

Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195
               +  +L ERG+   A+E +++GYAP S  +L  HL   G   E I+ AGL   G N 
Sbjct: 231 PGSWVPAHLAERGLGPDALERWQIGYAPASWRALTGHLLSSGHRPEAIVAAGLARRGRNG 290

Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255
           A  YD FR+R +F IR   G +  F GR        KYLNSPE+ LF KG+ LY      
Sbjct: 291 A-LYDLFRDRAMFAIRDGDGAIAGFIGRLREGAAGPKYLNSPESPLFRKGRLLYGLQEVR 349

Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN-VVSSLGTALTEYQLRLLWKLS 314
             L+   R           +LVEG  D L++  A   +  V++ G+A+T+ Q+R L K+ 
Sbjct: 350 GRLEAGARP----------VLVEGPFDALAVNTASPAHAAVATCGSAVTQAQVRALLKVW 399

Query: 315 PRI---------VLCFDGDDPGLRAAYKAIDLVLC------HLIPGNRVNFVLLSRGEDP 359
           PR+             DG    +     A                G  V+ VLL+ G DP
Sbjct: 400 PRVSGPPAAGGLRQGADGPGVLVMPDGDAAGRAAALRAWEVLAKVGAPVDAVLLAEGGDP 459

Query: 360 DSFIRCYGKTAFEKLIVESLP 380
              +R  G  A    +  + P
Sbjct: 460 ADVLRRRGPAALRGALASAHP 480


>gi|189423346|ref|YP_001950523.1| zinc finger CHC2-family protein [Geobacter lovleyi SZ]
 gi|189419605|gb|ACD94003.1| zinc finger CHC2-family protein [Geobacter lovleyi SZ]
          Length = 170

 Score = 72.2 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 15/90 (16%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I       PI+++I              KG Y  CCPFH ++ PS    D     
Sbjct: 95  ITPEMIDQARQ-YPITSIID-----------FSKGRYR-CCPFHKDRNPSMALYD--NHV 139

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
           +CF C+   D +S    L G +F E+V  L
Sbjct: 140 HCFVCNRSWDSISATMELDGVNFREAVLAL 169


>gi|281423787|ref|ZP_06254700.1| putative mobilizable transposon, excision protein [Prevotella oris
           F0302]
 gi|282881681|ref|ZP_06290344.1| CHC2 zinc finger containing protein [Prevotella timonensis CRIS
           5C-B1]
 gi|281304440|gb|EFA96537.1| CHC2 zinc finger containing protein [Prevotella timonensis CRIS
           5C-B1]
 gi|281402104|gb|EFB32935.1| putative mobilizable transposon, excision protein [Prevotella oris
           F0302]
          Length = 300

 Score = 72.2 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 15/99 (15%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I  +   +P+++ + +  +    R        + W   P+  E+TPSF  N +K  +Y F
Sbjct: 6   IDAIR-RMPLADFLARLGHEPVRRSGN-----ELWYIAPYRGERTPSFRVNVAKQLWYDF 59

Query: 66  SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100
                GD  +    FL       F++  + +A  A + +
Sbjct: 60  GLGKGGDIFTLAGEFLQ---SDDFMKQAKFIAEAANMTV 95


>gi|299148720|ref|ZP_07041782.1| putative mobilizable transposon, excision protein [Bacteroides sp.
           3_1_23]
 gi|298513481|gb|EFI37368.1| putative mobilizable transposon, excision protein [Bacteroides sp.
           3_1_23]
          Length = 294

 Score = 72.2 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 15/99 (15%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I  +   +P+++ + +  +    R        + W   P+  E+TPSF  N +K  +Y F
Sbjct: 6   IDAVR-RMPLADFLARLGHEPVRRSGN-----ELWYIAPYRGERTPSFRVNVAKQLWYDF 59

Query: 66  SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100
                GD  +    FL       F+   + +A  A + +
Sbjct: 60  GLGKGGDIFTLAGEFLQ---SGDFMAQAKFIAETANMTV 95


>gi|39939130|ref|NP_950896.1| DNA primase [Onion yellows phytoplasma OY-M]
 gi|39722239|dbj|BAD04729.1| DNA primase [Onion yellows phytoplasma OY-M]
          Length = 410

 Score = 71.8 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 124/353 (35%), Gaps = 62/353 (17%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQR--------- 91
            CP H  K P+     S    +C+ C    D +     +    SF E++QR         
Sbjct: 37  PCPIHQGKNPTCCHFTSNNKIHCWKCGKDYDLIDVYMVIRQIKSFSEAIQRIEGFMNSFE 96

Query: 92  ------------------LAAIAGVPLPVVDPKIEKKEKIQTDLIR----LIEVATDFFH 129
                             L  +     P      ++    +  L +    L     D++H
Sbjct: 97  FKTLSQQEKETTKITINPLKQLYHSMKPKQPVDEQEINIKKKQLFQKISPLFNQIRDYYH 156

Query: 130 HSLKNARDKRLH----YYLDERGIDSHAIEMFKLGYAPDSRYSLRE----HLRQKGFSEE 181
           + L   R+        Y   +R +    I+ FKLGYAP S  SL      + +++     
Sbjct: 157 YLLTTNRNNESQPGLTYLTKKRKLTLETIKEFKLGYAPLSDKSLSFRLVNYCKKQNIDTT 216

Query: 182 KIIEAGL---LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKY 233
           K++E G     I        +D F   +I P+ +   +   F           + +    
Sbjct: 217 KLVEYGFIKEKISQQGKKYFHDTFHGSIIIPVENGYNKTFHFYQNHFREVSYFQPKYQAL 276

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            N  +T  FH     +            ++     N       ++ + DV+S  Q  ++N
Sbjct: 277 TNFSQTPTFHFSYRFF------------LKLYHILNKQKPSSFMKVFFDVISCWQNNIKN 324

Query: 294 VVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344
           VV  +  A  L++ QL +L K + ++++  D D+ G + +    + +  H IP
Sbjct: 325 VVGLICVAQLLSQSQLTILKKENIKVIIALDNDETGQKRSEALGEQLTSHQIP 377


>gi|317475415|ref|ZP_07934679.1| hypothetical protein HMPREF1016_01661 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316908443|gb|EFV30133.1| hypothetical protein HMPREF1016_01661 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 300

 Score = 71.8 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 15/99 (15%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I  +   +P+++ + +  +    R        + W   P+  E+TPSF  N +K  +Y F
Sbjct: 6   IDAVRQ-MPLADFLARLGHEPVRRSGN-----ELWYLAPYRGERTPSFRVNVAKQLWYDF 59

Query: 66  SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100
                GD  +    FL       F++  + +A  A + +
Sbjct: 60  GLGKGGDIFTLAGEFLQ---SDDFMKQAKFIAEAANMTV 95


>gi|114567768|ref|YP_754922.1| DNA primase-like protein [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338703|gb|ABI69551.1| DNA primase-like protein [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 922

 Score = 71.8 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 88/563 (15%), Positives = 172/563 (30%), Gaps = 82/563 (14%)

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHS 131
           D +     +     +E++  LA    + LP    +  +  +++           +  H  
Sbjct: 65  DPIQVTQRIREVDEMEAIMALANDFQITLPTDWHQQLEAHRLRQRRNEAWTDFAEECHEL 124

Query: 132 LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191
           L +        Y   RG+    I   K+GY P    S+   L  KGF+ +++   GL + 
Sbjct: 125 LTD----EHRQYWRSRGLTDELINSIKIGYCP-GNGSIITTLISKGFTRQELWNFGLSVG 179

Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNF 251
             +              P    + +VI   GR      ++       +    + K LYN 
Sbjct: 180 DGSRE---FLTVGYYTLPNWDGK-KVIDVQGRRSIDDLTLTTPRYKNSSG--EVKALYN- 232

Query: 252 FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLW 311
                          R      + L EG  D LSL Q G  N   S G    + +   L+
Sbjct: 233 --------------PRALQEDTVFLAEGVPDTLSLIQMGF-NACGSYGVGGVKDEWIPLF 277

Query: 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371
           + S  + + FD DD G   +YK           G+    +LL   +D + F+  +G    
Sbjct: 278 RKSHEVFIAFDNDDAGKTQSYKRAR------EIGDNTRIILLPDVKDVNEFLVKHGIEQG 331

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           + L+ E         + + +     +     +L   +   I ++     + +Y   IR  
Sbjct: 332 QTLMRELAENAKTALEMDIDALPTESGKVDEDLLKDIIARIFNLP-PLRQNHYRDLIRHH 390

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
                +        Y     +N+     K       Q                      L
Sbjct: 391 FGMTKKDIEQFFRHYHNLKVRNSDTLGIKREDIDTPQV--------------------LL 430

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           I  P+ ++     + D      E Q L +       E + +    IH    +     L +
Sbjct: 431 IEDPSYVRLAQSFVLDKVLYAQEFQALGN------NEGESYRKRSIHIVTSDHELLPLPE 484

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           ++ +   +  +W    +                     LL R      ++ ++       
Sbjct: 485 KVTKDPNEIMIWKLAED-------------------QLLLRRPLNSATRRWSKTGTPYSI 525

Query: 612 EKT---AILISILHEVHIQIHQI 631
           +K          + +++ +I ++
Sbjct: 526 DKFLKGEEEQVSIKDLYQRIERM 548


>gi|284794829|gb|ADB93755.1| gp62 [Mycobacterium phage RedRock]
          Length = 130

 Score = 71.8 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 13  IHIPISNLIGQYVD-WDRRKTNAVKGDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
              PI+ +I +Y   W+         ++    CPFH + TPS   +     + C +C V+
Sbjct: 3   AESPITKVILRYYPDWEP---PPDHNEWNKCLCPFHGDGTPSAAVSYDLQGFNCLACGVR 59

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIA-GVPLPVVDPKIEKKEKI 113
           GD +S +      SF E+ +  A ++ G  +PV      K  + 
Sbjct: 60  GDAISIIRHEEEVSFAEADRIAAELSMGSHVPVSRKPARKPSRR 103


>gi|302345841|ref|YP_003814194.1| hypothetical protein HMPREF0659_A6128 [Prevotella melaninogenica
           ATCC 25845]
 gi|302149526|gb|ADK95788.1| conserved hypothetical protein [Prevotella melaninogenica ATCC
           25845]
          Length = 296

 Score = 71.8 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 5/114 (4%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I ++   I I + +G  +    +K     G Y    PF +E TPSF  + ++  +Y F+
Sbjct: 2   TIDEIKA-ISIKDYLGS-MSIYPKKNYGYYGMYK--SPFRNEHTPSFKVDYNQNLWYDFA 57

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
               G  +  +  L   S I++++       + LP +     +        I +
Sbjct: 58  LDEGGSLIDLVMKLHNFSLIQAIELFNGKQNI-LPKLSIANSETNSPSQSRIEI 110


>gi|78098666|gb|ABB20634.1| DnaG [Bifidobacterium indicum]
 gi|78098670|gb|ABB20636.1| DnaG [Bifidobacterium gallicum DSM 20093]
 gi|78098674|gb|ABB20638.1| DnaG [Bifidobacterium cuniculi]
 gi|78098676|gb|ABB20639.1| DnaG [Bifidobacterium psychraerophilum]
          Length = 123

 Score = 71.8 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R       E F  GYAP    +L  HL  KGF+++++++AGL   G      YD
Sbjct: 3   RKMLGGRNFSQADCERFGCGYAPRGWDNLVRHLAGKGFTQQEMLDAGLARQGQR--GIYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK--YLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L   ++++  Y+N+P+T L+ K + LY    A   +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARKLYDDDTIQAKYINTPDTQLYRKTQVLYGIDLAKPSI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|78098678|gb|ABB20640.1| DnaG [Bifidobacterium animalis subsp. animalis ATCC 25527]
 gi|78098696|gb|ABB20649.1| DnaG [Bifidobacterium animalis subsp. lactis]
          Length = 123

 Score = 71.8 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R         F  GYAP    +L  HL  KGF+++++++AGL   G  +   YD
Sbjct: 3   RKLLAGRNFSQQDCARFGCGYAPQGWDNLVRHLADKGFTQQEMLDAGLARQG--ARGIYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R  +PIR S G+ + FG R L   +S+  KY+N+P+T L+HK + LY    A   +
Sbjct: 61  YFRGRATWPIRDSTGRTLGFGARKLYDDDSIAAKYINTPDTQLYHKNQVLYGIDLAKPQI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|295104710|emb|CBL02254.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii SL3/3]
          Length = 202

 Score = 71.8 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
           CCPFH +  PS   ND+  +YYCF C   GD +   + L   +  ++ ++L    G+   
Sbjct: 33  CCPFHSDSDPSMKLNDT--YYYCFGCGANGDAIDLTAKLFDLNPRQAAEKLIHDFGLDPD 90

Query: 102 VVDPKIEKKEKIQTDLIR 119
                       + DL  
Sbjct: 91  KPPANAIALLPPKRDLTD 108


>gi|78098690|gb|ABB20646.1| DnaG [Bifidobacterium minimum]
          Length = 123

 Score = 71.8 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 4/120 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R   +     F  GYAP    +L  +L +KGF+ +++++AGL   G      YD
Sbjct: 3   RAMLSGRNFSARDYAYFGCGYAPRGWDNLVRYLAEKGFTHKEMLDAGLARQGQR--GIYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L   +    KY+N+P+T L+ K + LY    A   +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARRLYDDDAIEAKYINTPDTALYRKTQVLYGLDLAKKAI 120


>gi|317476931|ref|ZP_07936174.1| hypothetical protein HMPREF1016_03158 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907106|gb|EFV28817.1| hypothetical protein HMPREF1016_03158 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 286

 Score = 71.8 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 65/209 (31%), Gaps = 17/209 (8%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           ++ +   I +   +    ++   R+  +      W   PF +E+T SF  +  +  ++ F
Sbjct: 3   LEQIRQ-ISLVGFLEDLGHIPVSRKGNDV-----WFRSPFRNERTASFKVDTQRNVWFDF 56

Query: 66  SCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL---- 120
                GD       L G + F+E ++ L+  +G+ LP+   +  KK         +    
Sbjct: 57  GLGKGGDIFHLAGELTGSTGFMEQLEFLSGKSGI-LPLRPLQERKKIPRVFGFEDVKVTE 115

Query: 121 --IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
              E    +      +           + GI                        +    
Sbjct: 116 LSHEALKGYLKERGIDPAIAGRFCKEVKYGIRGKRYFAIGFMNRSGGYELRNPMFKGC-I 174

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLI 207
           S + I    L     ++   ++ F + L 
Sbjct: 175 SPKDISCVSLSEKKQDTCCVFEGFVDFLS 203


>gi|78098662|gb|ABB20632.1| DnaG [Bifidobacterium adolescentis]
          Length = 123

 Score = 71.8 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              LD R       + F  GYAP    +L  HL  KGF+++++++AGL   G      YD
Sbjct: 3   RKLLDGRNFSQADCQRFGCGYAPQGWDNLVRHLAGKGFTQQEMLDAGLARQGQR--GVYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L + +  + KY+N+P+T L+ K + LY    A + +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARKLYEDDTINAKYINTPDTQLYRKTQVLYGIDLAKSAI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|78098700|gb|ABB20651.1| DnaG [Bifidobacterium ruminantium]
          Length = 123

 Score = 71.8 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              LD R       + F  GYAP    +L  HL  KGF+++++++AGL   G      YD
Sbjct: 3   RKLLDGRNFSQADCQRFGCGYAPQGWDNLVRHLAGKGFTQQEMLDAGLARQGQR--GVYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L + +  + KY+N+P+T L+ K + LY    A + +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARKLYEDDAINAKYINTPDTQLYRKTQVLYGIDLAKSAI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|299141855|ref|ZP_07034990.1| mobilizable transposon protein, excision protein [Prevotella oris
           C735]
 gi|298576706|gb|EFI48577.1| mobilizable transposon protein, excision protein [Prevotella oris
           C735]
          Length = 295

 Score = 71.5 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 7/152 (4%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I ++   I I + +G  +     K  +  G Y    PF +E TPSF  + ++  +Y F+
Sbjct: 2   TIDEIKA-ISIKDYLGS-MSIYPTKNYSYYGMYK--SPFRNEHTPSFKVDYNQNLWYDFA 57

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126
               G  +  +  L  CS +++++ L       LP +    E K    T +  +   AT+
Sbjct: 58  LDEGGSLIDLVMKLHNCSLVQAIEAL-NNNKYKLPAITSISETKTLTLTRIEII--EATE 114

Query: 127 FFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158
             + +L      R       +           
Sbjct: 115 LCNPNLIKYLAARAVNLNTAKKYCKEIHYRVG 146


>gi|212550268|ref|YP_002308589.1| hypothetical protein CFPG_P2-9 [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549401|dbj|BAG84067.1| hypothetical protein [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 895

 Score = 71.5 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 21  IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC---NDSK-GFYYCFSCHVKGDHLSF 76
           I +Y           K  Y A  PF +EK PSF     ND+K   ++CFS  + G+   F
Sbjct: 29  ILKYYRVKLNAVKNQKYKYDALTPFKNEKVPSFKVFPPNDTKYARFHCFSTGMTGNVYDF 88

Query: 77  LSALLGCSFIESVQRLAAIAGVPL 100
           +  +  C    + +++  I GVP+
Sbjct: 89  VMKMEHCDKDAATKKILEILGVPI 112


>gi|229825964|ref|ZP_04452033.1| hypothetical protein GCWU000182_01328 [Abiotrophia defectiva ATCC
           49176]
 gi|229789706|gb|EEP25820.1| hypothetical protein GCWU000182_01328 [Abiotrophia defectiva ATCC
           49176]
          Length = 151

 Score = 71.5 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
           CCPFH +K PS      K  Y+CF+C + GD + ++S + G +  ++ ++L     + + 
Sbjct: 23  CCPFHRDKHPSMKI--DKN-YHCFACGIGGDAIDYVSRMFGLTQYQAAKKLIDDFSLMVE 79

Query: 102 ---------VVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
                        KI +  +    +IR+ +    +   
Sbjct: 80  HGRKMALSAKEKEKIIRARQENERIIRIKKRFGRWCSE 117


>gi|289762510|ref|ZP_06521888.1| DNA primase dnaG [Mycobacterium tuberculosis GM 1503]
 gi|289710016|gb|EFD74032.1| DNA primase dnaG [Mycobacterium tuberculosis GM 1503]
          Length = 156

 Score = 71.5 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 15/151 (9%), Positives = 49/151 (32%), Gaps = 6/151 (3%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +   L + + +PA+    +  L    + + E   + + + +           +    + +
Sbjct: 4   QREALKSALQYPALAGPVFDALTVEGFTHPEYAAVRAAIDTAGGTSAGLSGAQWLDMVRQ 63

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +    +   L  ++    +          D    Y   +    +   L RQ  E++ ++ 
Sbjct: 64  QTTSTVTSALISELGVEAIQV------DDDKLPRYIAGVLARLQEVWLGRQIAEVKSKLQ 117

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +++   + ++   L   L  +      +  Q
Sbjct: 118 RMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 148


>gi|78098702|gb|ABB20652.1| DnaG [Bifidobacterium thermacidophilum subsp. porcinum]
          Length = 123

 Score = 71.1 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R       E F  GYAP    +L  HL  KGF+++++++AGL   G      YD
Sbjct: 3   RKLLAGRNFSQADCERFGCGYAPQGWDNLVRHLSTKGFTQQEMLDAGLARQGQR--GVYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L + +  + KY+N+P+T L+ K + LY    A + +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARKLYEDDGINAKYINTPDTQLYRKNQVLYGIDLAKDAI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|86741993|ref|YP_482393.1| CHC2-type zinc finger-containing protein [Frankia sp. CcI3]
 gi|86568855|gb|ABD12664.1| zinc finger, CHC2-type [Frankia sp. CcI3]
          Length = 389

 Score = 71.1 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/388 (13%), Positives = 107/388 (27%), Gaps = 73/388 (18%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG---FYYCF 65
             +L    ++ L  + +  + +        +    P H ++ PS            + C 
Sbjct: 7   DAVLDATDLTALATE-ICGEPQGRGRA-ARWHCPNPAHPDEHPSMGIYQGHHGRWRWKCH 64

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--------------PVVDPKIEKKE 111
           +C   G  +  L    G +  E++  LA  AG+                P   P  E+  
Sbjct: 65  ACGDGGTAIDLLMTGTGMTVREALLDLADRAGITPAQHHTPHRPRSTAHPTPTPPAEQLT 124

Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171
            +   +  L+  A D     L          YL  RG+    +   ++G+ P  R+  R 
Sbjct: 125 PVDPAIGTLVTAAADL----LWRPIGSGARRYLHNRGLTDRLLAANRVGFDPGPRHLPRP 180

Query: 172 HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
               +                             +   +  +  + + +  R L+     
Sbjct: 181 DGLPRAGP------------------------GIVFPVLHPTDRRPVYYQLRYLNPELRR 216

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           +Y    +                    + +     R    +  ++ EG+ D L+   +G+
Sbjct: 217 RY----DQPAHDLA----------PNPKLAHLTTDRPAHPNLTVVCEGFPDALTAAHSGL 262

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPR------IVLCFDGDDPGLR-----AAYKAIDLVLC 340
             V        +      L +           ++CFD D              A  L   
Sbjct: 263 AAVALLGTAHASPASAPTLARRLTEERPGSAFIICFDDDTAHDPGKLPAGQNAAARLADE 322

Query: 341 HLIPGNRVNFVLLSRG-EDPDSFIRCYG 367
                  V  +    G +D +++ +   
Sbjct: 323 LAQHQRLVLNIQTPAGIKDLNAWWQQDP 350


>gi|258648659|ref|ZP_05736128.1| putative mobilizable transposon, excision protein [Prevotella
           tannerae ATCC 51259]
 gi|260851453|gb|EEX71322.1| putative mobilizable transposon, excision protein [Prevotella
           tannerae ATCC 51259]
          Length = 294

 Score = 71.1 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 11/102 (10%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I  +   IP+++ + +              + W   P+  E+TPSF  N +K  +Y F  
Sbjct: 6   IDAIRQ-IPLADFLAR---LGHEPARRSGNELWYIAPYRGERTPSFRVNVAKQLWYDFGL 61

Query: 68  HVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPLPVVDP 105
              GD  +    FL       F    + +A  A + +   + 
Sbjct: 62  GKGGDIFTLAGEFLQ---SGDFRTQAKFIAETANMTVAEWEK 100


>gi|218128972|ref|ZP_03457776.1| hypothetical protein BACEGG_00545 [Bacteroides eggerthii DSM 20697]
 gi|217988935|gb|EEC55252.1| hypothetical protein BACEGG_00545 [Bacteroides eggerthii DSM 20697]
          Length = 304

 Score = 71.1 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 15  IPISNLIGQYVDWDRRKTNAVK--GDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
           IP+ +++  Y        N  +  G Y     PF  + +PSF     +  +Y F     G
Sbjct: 9   IPLEDILSYY------GHNPSRHFGGYDMYSSPFRRDSSPSFKVFKDENRWYDFGEGTHG 62

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117
             +  +  +  CSF E+++R+  + G+         +   + +  L
Sbjct: 63  RAVDLVMRIENCSFPEAMRRIGEM-GLTGQAGATSGQTSVREKKAL 107


>gi|291514836|emb|CBK64046.1| DNA primase (bacterial type) [Alistipes shahii WAL 8301]
          Length = 294

 Score = 71.1 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 45/166 (27%), Gaps = 8/166 (4%)

Query: 18  SNLIGQYVDWDRRKTNAVKGDY---WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
           S+ IG      RR  +  +          P  +E+TPSF     KG +Y F     G  L
Sbjct: 5   SDCIGIREYLLRRGLHPHRETATHGMFLSPLREERTPSFSVRYDKGLWYDFGLDEGGTLL 64

Query: 75  SFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL----IEVATDFFH 129
             +  L GC   E+++ L   A   +P    P    +E     ++ +          +  
Sbjct: 65  QLVMRLEGCGMAEAIRHLRKEAANEVPFQPLPTASPREDSPLRILSVGTIRHPALIGYLR 124

Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
               +              +                        + 
Sbjct: 125 ERGIDPTVAGALCREVHYAVGERRFFAIGFRNDAGGWELRSPQFKG 170


>gi|300777222|ref|ZP_07087080.1| DNA primase [Chryseobacterium gleum ATCC 35910]
 gi|300502732|gb|EFK33872.1| DNA primase [Chryseobacterium gleum ATCC 35910]
          Length = 286

 Score = 71.1 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 99/292 (33%), Gaps = 15/292 (5%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           +++   I I  ++  +  +   K N     Y+A     +EKTPS   +  K   + F   
Sbjct: 4   EEIKQKIDIRTVLEMFGRF-PVKENKRSAFYFAL--DREEKTPSLSVDFIKNKAFDFGTG 60

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE-----KIQTDLIRLIEV 123
              D +S +  +  CS  E+++ L +         +P  ++K+     K    ++ + E+
Sbjct: 61  KSYDVISIVQQIKKCSVSEALKYLCSS---DFSYQNPIHKEKKGEIRLKDNYKILEIKEI 117

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS-LREHLRQKGFSEEK 182
                   LK+       + + E   +      F +G+  DS    +R    +     + 
Sbjct: 118 IHPALIRYLKSRNVLEQKHLVQEVHYERQDKTYFGIGFQNDSGDFEIRNPYSKICLGSKD 177

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           +    +  +  N    ++ F + L F   S+           L    +     + E +  
Sbjct: 178 VSWIKVRSNSKNEVAVFEGFFDYLTFRNLSNEDHPNCDC---LILNSTAMLFKAKEKLKD 234

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           +    L+    A     +SI +   +N     ++   Y D+        +  
Sbjct: 235 YNKIILFLDNDANGKSVRSIIEKEYKNVEDSSLMYADYKDLNQWFCVQKEVP 286


>gi|253572812|ref|ZP_04850212.1| TraP [Bacteroides sp. 1_1_6]
 gi|251837712|gb|EES65803.1| TraP [Bacteroides sp. 1_1_6]
          Length = 300

 Score = 71.1 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 11/97 (11%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I  +   +P+++ + +              + W   P+  E+TPSF  N +K  +Y F  
Sbjct: 6   IDAVR-RMPLTDFLAR---LGHEPVRRSSNELWYLAPYRGERTPSFRVNVAKQLWYDFGL 61

Query: 68  HVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100
              GD  +    FL       F++  + +A  A + +
Sbjct: 62  GKGGDIFTLAGEFLQ---SDDFMKQAKFIAEAANMTV 95


>gi|78098672|gb|ABB20637.1| DnaG [Bifidobacterium longum subsp. suis]
 gi|78098684|gb|ABB20643.1| DnaG [Bifidobacterium longum subsp. infantis]
          Length = 123

 Score = 71.1 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R       E F  GYAP    +L  HL  KGF++++I++AGL   G      YD
Sbjct: 3   RKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGFTQKEILDAGLARQGQR--GIYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L + + +  KY+N+P+T L+ K + LY    A + +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINTPDTQLYRKTQVLYGIDLAKSAI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|78098698|gb|ABB20650.1| DnaG [Bifidobacterium pullorum]
          Length = 123

 Score = 71.1 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R       E F  GYAP    +L  HL  KGF+++++++AGL   G      YD
Sbjct: 3   RKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLAGKGFTQQEMLDAGLARRGQR--GVYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L   +++  KY+N+P+T L+ K + LY    A   +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARKLYDDDAIAAKYINTPDTQLYRKNQVLYGIDLAKAAI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|78098692|gb|ABB20647.1| DnaG [Bifidobacterium saeculare]
          Length = 123

 Score = 71.1 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R       E F  GYAP    +L  HL  KGF+++++++AGL   G      YD
Sbjct: 3   RKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGFTQQEMLDAGLARRGQR--GVYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L + +  + KY+N+P+T L+ K + LY    A   +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARKLYEDDAITAKYINTPDTQLYRKTQVLYGIDLAKAAI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|78098660|gb|ABB20631.1| DnaG [Bifidobacterium magnum]
          Length = 123

 Score = 71.1 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
           H  LD R    +    F  GYAP    +L  HL +KGF+++++++AGL   G+N  T YD
Sbjct: 3   HKMLDGRNFSWNDAMHFGCGYAPKGWDNLVRHLSEKGFTQQEMMDAGLARRGNNG-TVYD 61

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETILFHKGKNLYNFFGALNYLQ 259
            FR R  +PIR + G  + FG R L   ++  KYLN+P+T L+ K + LY    A N +Q
Sbjct: 62  YFRGRATWPIRDTAGNTLGFGARKLFDDDNAGKYLNTPDTALYRKSQVLYGLDLAKNSIQ 121

Query: 260 KS 261
           K 
Sbjct: 122 KK 123


>gi|78098694|gb|ABB20648.1| DnaG [Bifidobacterium gallinarum]
          Length = 123

 Score = 71.1 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R       E F  GYAP    +L  HL  KGF+++++++AGL   G      YD
Sbjct: 3   RKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGFTQQEMLDAGLARRGQR--GVYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L + +++  KY+N+P+T L+ K + LY    A   +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARKLYEDDAIAAKYINTPDTQLYRKTQVLYGIDLAKAAI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|80159745|ref|YP_398489.1| putative DNA primase [Clostridium phage c-st]
 gi|78675335|dbj|BAE47757.1| putative DNA primase [Clostridium phage c-st]
          Length = 325

 Score = 71.1 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 91/307 (29%), Gaps = 36/307 (11%)

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
           GD  + +  +    F ++V+ L  I G+   + + +  KKE+ +  L  + + A      
Sbjct: 52  GDIFTLVMEIKKYEFPQAVKYLHEILGLK-YIFNIQDIKKEEKKDIL-DVFKKA------ 103

Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190
                  K+      +     +     ++   P           ++G          +  
Sbjct: 104 -----MQKKHFNNDIDELKIYNEDICREIIQIP------YIGWIREGIMPFTQERFNIGY 152

Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP-ETILFHKGKNLY 249
             D +  +                 + +   GRTL K   +  +        F K  NLY
Sbjct: 153 SRDKNRIAIPHRFWC------GKENEYVGVMGRTLVKNYDLLDIPKYFPLKAFPKSMNLY 206

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309
                  Y+QK          ++ II+ E    VL       +  V+  G  L   Q+R+
Sbjct: 207 GLQENYKYIQK----------ANKIIVFEAEKSVLKAHSFLCRLGVALGGHELCPEQIRI 256

Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
           L  L   I+   D D     +      +            + LL   + P        K 
Sbjct: 257 LLGLDVEIIFAMDNDMDEQLSINMCNQVKSFRRTSYIYDKWGLLGEKDSPVDKGMKVFKA 316

Query: 370 AFEKLIV 376
            +   I 
Sbjct: 317 LYNNRIK 323


>gi|154506634|ref|ZP_02043091.1| hypothetical protein RUMGNA_03901 [Ruminococcus gnavus ATCC 29149]
 gi|260588760|ref|ZP_05854673.1| DNA primase [Blautia hansenii DSM 20583]
 gi|153793348|gb|EDN75771.1| hypothetical protein RUMGNA_03901 [Ruminococcus gnavus ATCC 29149]
 gi|260540843|gb|EEX21412.1| DNA primase [Blautia hansenii DSM 20583]
          Length = 212

 Score = 70.7 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
            ACCPFH + +PS   ++    YYCF C   GD +   + L G    E+  +LA   G+ 
Sbjct: 29  MACCPFHSDMSPSMKLDE---RYYCFGCGATGDAVDLTAKLFGIGLREAAVKLAEDFGLN 85

Query: 100 LPVVDPKIEKKE 111
                    +  
Sbjct: 86  YDSRQKPSVRPR 97


>gi|237743677|ref|ZP_04574158.1| predicted protein [Fusobacterium sp. 7_1]
 gi|229432708|gb|EEO42920.1| predicted protein [Fusobacterium sp. 7_1]
          Length = 586

 Score = 70.7 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 77/607 (12%), Positives = 185/607 (30%), Gaps = 65/607 (10%)

Query: 23  QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL-SALL 81
           +Y++      N  K         H++K PS           CF+C    +    +     
Sbjct: 25  EYLNLK--GVNTNKF-MRCFSKTHEDKHPSMSFYRRANICKCFACGKTYNIFELVGQEYG 81

Query: 82  GCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLH 141
             +F E V++                E+    +  +  +  +    +     +A      
Sbjct: 82  LKTFKEQVEK---------------AEELYNNRGLIKDINVI----YSQKGTSAELDYAR 122

Query: 142 YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDR 201
               E+ + +   +     Y    R    ++L ++G S++ I    +  D          
Sbjct: 123 EKKVEKDLINIHGKKAFYFYECKKRMGNCDYLEKRGISKKVIDYHNIGYDSSFKEGKMKF 182

Query: 202 FRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKS 261
               +IFP   +      +  R +++  + +Y+   E  +F+                  
Sbjct: 183 PIQAIIFPTSKTS-----YTARNVNEKSNFRYIKVGEASMFN------------------ 219

Query: 262 IRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCF 321
              ++ +N      +VEG +D LSL +   + +       +  +  +L            
Sbjct: 220 -YWELEKNKKVPFYIVEGEIDALSLAEVNRKAISLGSINDINIFVNKLEKDSPENKFYLM 278

Query: 322 -DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG-EDPDSFIRCYGKTAFEKLIV--- 376
            D D  G  A     +L+      G       +    +D + F+    ++  +KL     
Sbjct: 279 LDNDIRGQEAQK---ELLAALNKIGINCVSTNILENFKDVNEFLVKDKESLIKKLEELEK 335

Query: 377 -ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY---SQAIRDRL 432
            E+  + +      + +       +              I   K+R       +  +D +
Sbjct: 336 VENKNIKEKGGTNMSSDVKILDFIKGRIEANTDGINYTTISQDKIRETLGMSKEEFKDGM 395

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
             LF           +  K N+         +++   +  K          E        
Sbjct: 396 ATLFYSKRIFFHRE-KEEKINSSDGTVSLIDKKVRLFTDEKAFKDFSNEWTEREKAKEDK 454

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           N  A + E  ++   ++  +   QK+++ +     E K F      ++  +  F ++   
Sbjct: 455 NKKAEIAEIKEKDKKVKKLSENAQKIYNKIKEINKEDKVFAKVNDIRKELDIEFKDMQSA 514

Query: 553 LDRQVRDA---GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           L     +      + +  + +  +++  Y   +   K+   +  +KE I++++     K 
Sbjct: 515 LKELTSNKISYARFISYKDKDTEEIKNDYV--VTNSKKVFAIISEKEAIKEKMFSNDEKA 572

Query: 610 EAEKTAI 616
             +K   
Sbjct: 573 IPQKVKK 579


>gi|226377773|ref|YP_002790822.1| putative DNA primase [Lactobacillus phage Lb338-1]
 gi|225921551|gb|ACO37064.1| putative DNA primase [Lactobacillus phage Lb338-1]
          Length = 351

 Score = 70.7 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 106/369 (28%), Gaps = 62/369 (16%)

Query: 43  CPFHDEKTPSFHCNDSK-----GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA--- 94
           CPF       F+ N+ +     G + C++C   G+  S    +   SF +     A    
Sbjct: 25  CPFCGSPKQKFYINNDETSNKFGLWICYNCEEHGNLASLYMRIKKVSFKQ-----AQDDM 79

Query: 95  -IAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHA 153
             AG+ +  V    E        L             +L      + H     +      
Sbjct: 80  FNAGISMDSVPYNNELTNNENIML-------------TLGKPMQAKEHSIEANKLSPPAL 126

Query: 154 IEMFKL-----GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208
               K               L      K     +           +S       +  ++F
Sbjct: 127 PYGLKYFNGNSPSEIPYWNYLERRGFSKELILSQGFGYVESGYAISSRGKRIPIQKHVVF 186

Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETI---LFHKGKNLYNFFGALNYLQKSIRKD 265
               S+G    +  R++      K +N+P+        +   ++    A           
Sbjct: 187 FSYDSKGNYTYWNTRSI-TNSIPKSINAPQNESGTAITREDVVFGLNYASK--------- 236

Query: 266 VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL---WKLSPRIVLCFD 322
                   II+ EG  D L+L        V + G  +T+ Q++L+    +   +I++  D
Sbjct: 237 -----QPVIIITEGVPDALTLY----PYGVGTFGKQVTDRQIKLIIDSIQEKQKILVMLD 287

Query: 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382
            D          + L             V    G+D +S  R       ++  + + P+ 
Sbjct: 288 MDASD-----LLVKLGRKLYDKHKETYLVYNPTGKDANSLGRDKAFEVIKRHTMRADPVS 342

Query: 383 DMLWKRETE 391
             L+    +
Sbjct: 343 SNLFLLHKQ 351


>gi|78098668|gb|ABB20635.1| DnaG [Bifidobacterium pseudolongum subsp. globosum]
 gi|78098704|gb|ABB20653.1| DnaG [Bifidobacterium pseudocatenulatum DSM 20438]
          Length = 123

 Score = 70.7 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 4/120 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R         F  GYAP    +L  HL  KGF+++++++AGL   G      YD
Sbjct: 3   RKLLAGRDFSQADCARFGCGYAPRGWDNLVRHLANKGFTQQEMLDAGLARQGQR--GVYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L   + +  KY+N+P+T L+HK + LY    A   +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARKLYDDDQINAKYINTPDTQLYHKNQVLYGIDLAKKQI 120


>gi|153951941|ref|YP_001397989.1| putative DNA primase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939387|gb|ABS44128.1| putative DNA primase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 388

 Score = 70.7 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 61/414 (14%), Positives = 131/414 (31%), Gaps = 71/414 (17%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF----H--DEKTPSFH 54
           M Y    I+ L  +IPI ++       +     + K      C F    H  ++   S  
Sbjct: 1   MKYD---IERL-NNIPIMDV------LESLGAISGKNKRIIHC-FNITAHKNNDHNASLG 49

Query: 55  CNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-------------- 100
             +S    +CF+C + G+ ++ +  +   +F E+ + L +   +P               
Sbjct: 50  IYESTNTCHCFACGIGGNPVNVVKTMFNGNFKEACEYLHSQFNIPFLDGIQATYKKVFER 109

Query: 101 PVVDPKIEKKEKIQTDLIRL------------IEVATDF-------FHHSLKNARDKRLH 141
           P    K           + +            +  A          +  SL   +  +  
Sbjct: 110 PKPKAKDYVFFDPNKKYVEVEKLVPFVQNYSTLTKAQKLKLVYTTIYRFSLSTEQKAKNL 169

Query: 142 YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDR 201
           YYL     D   +E        + +    E+L ++ F  E +IE  +  +   +      
Sbjct: 170 YYLKRGIKDLSLVEKIGFLNFNNIKK--LENLLKEYFPIEDLIEFKIFSEEKQAWKYAFN 227

Query: 202 FRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKS 261
                 F +     +V+ F  R +         N  + +    G  ++     L      
Sbjct: 228 VALVPNFDLY--SNRVVGFSLRVIDS-----TYNGAKEVNISCGNIVFAMPFGLE----- 275

Query: 262 IRKDVRRNSSSFIILVEGYMDVLSL--CQAGVQNVVSSLGTALTEYQLRLLWKLS-PRIV 318
              +        I++ EG++D LS           +         ++  +L      R++
Sbjct: 276 ---NKSLKECEKIVITEGHIDCLSARNYYKQDSKTLFVSFAGTFSFREEILTVFKGKRVM 332

Query: 319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFE 372
           LCFD D+ G+       + +    I    + +  ++ G+D +  +      + +
Sbjct: 333 LCFDKDEAGINGEKSLSEKLSLLNIKNYSLTW-DVADGKDLNDLLLADKMNSIK 385


>gi|303236523|ref|ZP_07323108.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|302483271|gb|EFL46281.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
          Length = 296

 Score = 70.7 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 5/114 (4%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I ++   I I + +G  +     K     G Y    PF +E TPSF  + ++  +Y F+
Sbjct: 2   TIDEIKA-ISIKDYLGS-MSIYPTKNYGYYGMYK--SPFRNEHTPSFKVDYNQNLWYDFA 57

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
               G  +  +  L  CS +++++         LP       K        I +
Sbjct: 58  LDEGGSLIDLVMKLHNCSLVQAIELFNGKQN-NLPKFSIANSKTISPNQSRIEV 110


>gi|261886285|ref|ZP_06010324.1| DNA primase [Campylobacter fetus subsp. venerealis str. Azul-94]
          Length = 293

 Score = 70.7 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 125/352 (35%), Gaps = 59/352 (16%)

Query: 281 MDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340
           MD + L  AG+ N V+ LGTALTE  + LL +   +++L FD D+ G+ AA+K+  L+  
Sbjct: 1   MDCIMLHLAGISNAVAVLGTALTEKHIPLLKRSDIKVILSFDNDEAGVNAAFKSAKLLAS 60

Query: 341 HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE 400
               G     VL+S G+DP   +           +   + L +   +   ++ +  TP E
Sbjct: 61  SECDG---RVVLISGGKDPAELVASGRANELRNSLEGGVELGEFYIRHLIKSSNPKTPLE 117

Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
            A+    ++     +K + +   Y   +   L  L     +      RY  K    ++ K
Sbjct: 118 VAKTLESVQEFTKGLK-EIVANSYVPLVSSLLS-LAPNSFSLCGNGFRYSPKKQMAKETK 175

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
              +                 L E  +L  ++ +   L+    +     +      +++ 
Sbjct: 176 SAKK----------------DLLELEILKNMLLNKDYLEVVKSDCGSDMFVT--HNEIYK 217

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +                  + +      +++L                ++ D  + Y  
Sbjct: 218 AV-----------------TISQNPNNPHIREL----------------SLNDNFELYDS 244

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
              L K   +L  +    +K I  + +  +  K   + + L  +  Q+  I+
Sbjct: 245 LDRLKKALNIL--KINFCDKTIVLLASSNDKSKFEKI-AQLQNIKKQLKGIQ 293


>gi|302858570|gb|ADL71316.1| gp56 [Mycobacterium phage Eagle]
          Length = 137

 Score = 70.7 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 17  ISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF 76
           I   I +Y        +  K      CPFH E+ PS   +  +  + C +C VKGD L  
Sbjct: 9   IVQAIHRYHPDWEPPKDTGKDWIKCLCPFHAEEVPSAAVSFVRQAFNCLACGVKGDVLGL 68

Query: 77  LSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116
           +      S+ E+ +R+A      L     +    +  +  
Sbjct: 69  IKKQEEVSYAEA-ERIAE----ELSPGGNRAVPAKSERQS 103


>gi|190571861|ref|YP_001966868.1| DNA primase [Tomato big bud phytoplasma]
 gi|74315216|gb|ABA02287.1| DNA primase [Tomato big bud phytoplasma]
          Length = 331

 Score = 70.7 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 100/273 (36%), Gaps = 26/273 (9%)

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             ++ + +  + F+   L         Y L +R ++   I+ F++G+A  +  +L  +L 
Sbjct: 77  DTILAIWDEISHFYQKQLWATPAALD-YLLRKRQLNPLLIKEFQIGFANKNNQNLLNYLE 135

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK------G 228
            +           LL        SYD   N  + P+    GQ+I +  R           
Sbjct: 136 NQQADLMPYYAVDLLRKNPKF--SYDGCLNCWLIPVFDENGQIIHYY-RHHYPAELPYRP 192

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
           +     N     +F      Y F  A   +            +   IL EG+ DVL   Q
Sbjct: 193 KYQALRNLTNQTIFS---IPYGFHYAKKAI----------LDTKTAILHEGFFDVLQSYQ 239

Query: 289 AGVQNVVSSLGTALTEYQL--RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
             ++NV+  +  +            K   +++L  D D+ GL+ A++    +    I   
Sbjct: 240 NQIKNVIGLITVSNNFSPFILDFFKKYQIKVILGLDNDETGLKTAHRLSQQLKRLNIEN- 298

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESL 379
            +  +     +D D  +R YG   ++K+ +ES 
Sbjct: 299 YIKTIPNHDCKDADELLRKYGLKTYQKIYLESK 331


>gi|46580593|ref|YP_011401.1| primase [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450012|gb|AAS96661.1| primase, putative [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234328|gb|ADP87182.1| phage/plasmid primase, P4 family [Desulfovibrio vulgaris RCH1]
          Length = 830

 Score = 70.7 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 101/358 (28%), Gaps = 47/358 (13%)

Query: 41  ACCPFHDEKTPSFHCNDSKGFYYCF-SCHVKGDHLSFLSALLGCS------FIESVQRLA 93
             CP HD++  SF  N  +  ++CF  C   GD +     + G        F    +  A
Sbjct: 33  GLCPLHDDQNQSFSYNVDEDVFHCFRQCVEDGDLVDLYCHVRGLPLRSGEGFKAFRREFA 92

Query: 94  AIAGV-PLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSH 152
           A AGV       P   +K           E A+          +            I   
Sbjct: 93  ADAGVGQPARRTPGETRK----------HEAASQ---------KGAAKRSPRQNLEIPEA 133

Query: 153 AIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR----NRLIF 208
             E            +     R             LL      +  Y  F     +R++ 
Sbjct: 134 VYEAMTPV--TPDWAARLYTQRGWTPEVMTTYGVRLLSHFRKKSDLYAVFPLKTIDRVVI 191

Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRR 268
           P+R ++G +                 ++       + K    +     +    +      
Sbjct: 192 PVRDAQGVLRNLRC-----------YHALGKPPGDQPKI---YSWGRGHGASMLFPPASM 237

Query: 269 NSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGL 328
                ++L EG  D L     GV+N ++  G      +          +V+ +D D  G 
Sbjct: 238 LRPGGVLLCEGEGDCLCAFSHGVRNAITQTGKPNEWPEDHAEALAGRDVVIAYDADQAGQ 297

Query: 329 RAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLW 386
           + A  A   ++        + +       +  S+   +G+   +  +     L D + 
Sbjct: 298 KYAEAAAKNLVRKGCAVRIIRWPAFMGLREDGSWPEDHGQDLTDFFVRHRKTLSDFML 355


>gi|78098682|gb|ABB20642.1| DnaG [Bifidobacterium thermophilum]
 gi|78098708|gb|ABB20655.1| DnaG [Bifidobacterium pseudolongum subsp. pseudolongum]
          Length = 123

 Score = 70.7 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 4/120 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R         F  GYAP    +L  HL  KGF+++++++AGL   G      YD
Sbjct: 3   RKLLAGRDFSQVDCARFGCGYAPRGWDNLVRHLADKGFTQQEMLDAGLARQGQR--GVYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L   + +  KY+N+P+T L+HK + LY    A   +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARKLYDDDQINAKYINTPDTQLYHKNQVLYGIDLAKKQI 120


>gi|78098714|gb|ABB20658.1| DnaG [Bifidobacterium breve UCC2003]
          Length = 123

 Score = 70.3 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R       E F  GYAP    +L  HL  KGF++++I +AGL   G      YD
Sbjct: 3   RKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGFTQKEIFDAGLARQGQR--GIYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L + + +  KY+N+P+T L+ K + LY    A + +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINTPDTQLYRKTQVLYGIDLAKSAI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|78098712|gb|ABB20657.1| DnaG [Bifidobacterium scardovii]
          Length = 123

 Score = 70.3 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 45/123 (36%), Positives = 67/123 (54%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
           H  LD R       E F  GYAP    +L  HL  KGF+++++++AGL   G      YD
Sbjct: 3   HKLLDGRNFSQADCERFGCGYAPQGWDNLVRHLASKGFTQQEMLDAGLARQGQR--GIYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L + +  + KY+N+P+T L+ K + LY    A + +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARKLFEDDAINAKYINTPDTQLYRKTQVLYGIDLAKSAI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|78098664|gb|ABB20633.1| DnaG [Bifidobacterium catenulatum]
          Length = 124

 Score = 70.3 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 4/120 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R         F  GYAP    +L  HL  KGF+++++++AGL   G      YD
Sbjct: 3   RKLLAGRDFSQVDCARFGCGYAPRGWDNLVRHLADKGFTQQEMLDAGLARQGQR--GVYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L   + +  KY+N+P+T L+HK + LY    A   +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARKLYDDDQINAKYINTPDTQLYHKNQVLYGIDLAKKQI 120


>gi|78098706|gb|ABB20654.1| DnaG [Bifidobacterium boum]
          Length = 123

 Score = 70.3 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R       E F  GYAP    +L  HL  KGF+++++++AGL   G      YD
Sbjct: 3   RKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLADKGFTQQEMLDAGLARRG--QHGIYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R  +PIR S G+ + FG R L   +++  KY+N+P+T L+ K + LY    A + +
Sbjct: 61  YFRGRATWPIRDSTGRTLGFGARKLYDDDTIAAKYINTPDTQLYRKTQVLYGIDLAKSSI 120

Query: 259 QK 260
            K
Sbjct: 121 VK 122


>gi|116689346|ref|YP_834969.1| zinc finger, CHC2-family protein [Burkholderia cenocepacia HI2424]
 gi|116647435|gb|ABK08076.1| zinc finger, CHC2-family protein [Burkholderia cenocepacia HI2424]
          Length = 119

 Score = 70.3 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 16  PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH-VKGDHL 74
           P+  ++ + +     K N         CP H E   S   +  +G + CF+C    GD L
Sbjct: 21  PVVEVLAR-LQLQPSKPNGAGYAQV-RCPIHGENHASLSIHFERGNWRCFACGEAGGDAL 78

Query: 75  SFLSALLGCSFIESVQR---LAAIAGV 98
                  G SF ++ +    LA +A +
Sbjct: 79  ELYRRARGLSFAQAARELDALATVANI 105


>gi|107022398|ref|YP_620725.1| Zinc finger, CHC2-type [Burkholderia cenocepacia AU 1054]
 gi|105892587|gb|ABF75752.1| Zinc finger, CHC2-type [Burkholderia cenocepacia AU 1054]
          Length = 111

 Score = 70.3 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 16 PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH-VKGDHL 74
          P+  ++ + +     K N         CP H E   S   +  +G + CF+C    GD L
Sbjct: 13 PVVEVLAR-LQLQPSKPNGAGYAQV-RCPIHGENHASLSIHFERGNWRCFACGEAGGDAL 70

Query: 75 SFLSALLGCSFIESVQR---LAAIAGV 98
                 G SF ++ +    LA +A +
Sbjct: 71 ELYRRARGLSFAQAARELDALATVANI 97


>gi|313157418|gb|EFR56840.1| mobilizable transposon, excision family protein [Alistipes sp.
           HGB5]
          Length = 294

 Score = 70.3 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL----AAIAG 97
             P   E+TPSF     KG +Y F     G  L  +  L GC   E+++RL    A    
Sbjct: 32  LSPLRKERTPSFSVRYDKGLWYDFGLGEGGTLLQLVMRLEGCGMAEAIRRLRKGAADEVS 91

Query: 98  VP-LPVVDPKI 107
              LP   P+ 
Sbjct: 92  FQPLPTASPRE 102


>gi|261414703|ref|YP_003248386.1| zinc finger CHC2-family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371159|gb|ACX73904.1| zinc finger CHC2-family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 390

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 14/112 (12%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF-----HDEKTPSFHCNDSK 59
            + +K     + I+ +    +D        V+G     C F     H ++TPS   ++ +
Sbjct: 3   EEELKQFKAALSITTVA---MDL---GLPVVRGR--CRCFFPTRHAHGDRTPSVSFSEER 54

Query: 60  GFYYCFSCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK 110
           G + C+ C  V+GD +S +  +  CSF+E++  L    G  L    P+++ +
Sbjct: 55  GTFRCWVCDDVRGDVISLVQFVKNCSFLEALNWLKETYGFLLRGAKPQVQNR 106


>gi|160889336|ref|ZP_02070339.1| hypothetical protein BACUNI_01759 [Bacteroides uniformis ATCC 8492]
 gi|237713376|ref|ZP_04543857.1| TraP [Bacteroides sp. D1]
 gi|262406752|ref|ZP_06083301.1| TraP [Bacteroides sp. 2_1_22]
 gi|293371472|ref|ZP_06617894.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CMC 3f]
 gi|298378064|ref|ZP_06988011.1| mobilizable transposon [Bacteroides sp. 3_1_19]
 gi|156861343|gb|EDO54774.1| hypothetical protein BACUNI_01759 [Bacteroides uniformis ATCC 8492]
 gi|229446615|gb|EEO52406.1| TraP [Bacteroides sp. D1]
 gi|262355455|gb|EEZ04546.1| TraP [Bacteroides sp. 2_1_22]
 gi|292633546|gb|EFF52107.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CMC 3f]
 gi|298265025|gb|EFI06691.1| mobilizable transposon [Bacteroides sp. 3_1_19]
          Length = 299

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I+++   IPI++ + +  +    R        + W   P+  E+TPSF  N +K  +Y F
Sbjct: 6   IENMRQ-IPIADFLARLGHEPVRRSGN-----ELWYRAPYRSERTPSFRVNVAKQLWYDF 59

Query: 66  SCHVKGDHLSFLSALLGC-SFIESVQRLAAIAGVPL 100
                GD  + +        F+   + +A  A +PL
Sbjct: 60  GLGKGGDIFTLVGEFTRSGDFMAQARFIAETARMPL 95


>gi|282598661|ref|YP_003358758.1| gp55 [Mycobacterium phage Peaches]
 gi|255928188|gb|ACU41806.1| gp55 [Mycobacterium phage Peaches]
          Length = 137

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 17  ISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF 76
           I   I +Y        +  K      CPFH E+ PS   +  +  + C +C VKGD L  
Sbjct: 9   IVQAIHRYHPDWEPPKDTGKDWIKCLCPFHAEEVPSAAVSFVRQAFNCLACGVKGDVLGL 68

Query: 77  LSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116
           +      S+ E+ +R+A      L     +    +  +  
Sbjct: 69  IKKQEEVSYAEA-ERIAE----ELSPGGNRTIPAKSERQS 103


>gi|168205265|ref|ZP_02631270.1| DNA primase [Clostridium perfringens E str. JGS1987]
 gi|170663075|gb|EDT15758.1| DNA primase [Clostridium perfringens E str. JGS1987]
          Length = 373

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/339 (15%), Positives = 100/339 (29%), Gaps = 30/339 (8%)

Query: 32  TNAVKGDYWACCPFHDE--KTPSFHCNDS------KGFYYCFSCHVKGDHLSFLSALLGC 83
                G + A CPF +   K  S     +         Y CF C   G+ +   + L G 
Sbjct: 32  KPNGHGTFNAECPFCESSSKKLSLVVEANINGKTYTNSYRCFKCGEYGNAIGLYARLKGI 91

Query: 84  SFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL-----IEVATDFFHHSLKNARDK 138
               +++ LA    V       K     K     +       ++     F   L     +
Sbjct: 92  DKQTAIKELANDINVSKNKEVEKKIIDSKEHPSCLETADINSLDKVYRAFLDLL--PLYE 149

Query: 139 RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS 198
                L ERG+    I + K    P S         +       +           +  +
Sbjct: 150 SSLKNLRERGLTDDYIRLKKYRSLPRSYKERYAITDKLIEMGFNLEGIAGFYKDKYNHWT 209

Query: 199 YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYL 258
           +   +  L  PI++   ++ +F  R   K   ++YL    +      K L          
Sbjct: 210 FSNSQGFL-IPIKTIDNKICSFQIRLDEKIGKMRYLYFTSSKYESGAKAL---------- 258

Query: 259 QKSIRKDVRRNSSSFIILVEG-YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK-LSPR 316
             +       N++  I + EG     ++   +    +      +  +  + +L       
Sbjct: 259 --ACPSISYGNNTDTIYITEGVLKGDVATFFSNDTFISVPGVNSAIDILIDMLKTLNPIN 316

Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
            V+C+D D        KA+  ++  L   N    + L  
Sbjct: 317 TVICYDMDMYENDDVKKALIKLINILNENNIYCELKLWD 355


>gi|119383732|ref|YP_914788.1| hypothetical protein Pden_0981 [Paracoccus denitrificans PD1222]
 gi|119373499|gb|ABL69092.1| hypothetical protein Pden_0981 [Paracoccus denitrificans PD1222]
          Length = 380

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 14/119 (11%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M      + +    +PI++++ +    +        G+    CP    +   F  N   G
Sbjct: 1   MTRDDHRLDEAKA-MPIADVVAR---LELSGLVRTGGELVGPCPQCGGRD-RFGVNLKTG 55

Query: 61  FYYCFS-CH--VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116
            + C   C    KGD ++ +   LG  F  +++ L        P       ++ + +  
Sbjct: 56  LFQCRKECGPHAKGDQIALVQHTLGMDFRAALEWLCG------PAQGLSDAERAERRRT 108


>gi|188994787|ref|YP_001929039.1| putative DNA primase [Porphyromonas gingivalis ATCC 33277]
 gi|188594467|dbj|BAG33442.1| putative DNA primase [Porphyromonas gingivalis ATCC 33277]
          Length = 295

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 47/116 (40%), Gaps = 2/116 (1%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102
            PF +E +PSF  +     +Y F     G  +  +  L GC+  +++  L     +    
Sbjct: 34  SPFREESSPSFKVDYRVNLWYDFGSGEGGSIIDLVMKLHGCTLSQAIGLLENRVEISPLT 93

Query: 103 VDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158
            +    + E  +   +++IE  +    + L+  +++++   + +R       ++  
Sbjct: 94  QNDFDRQAESGEE--MKIIEAVSLHHPNLLRYLQNRKIDCSVAKRYCREVHYQVKG 147


>gi|163845880|ref|YP_001633924.1| zinc finger CHC2-family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523597|ref|YP_002568067.1| zinc finger CHC2-family protein [Chloroflexus sp. Y-400-fl]
 gi|163667169|gb|ABY33535.1| zinc finger CHC2-family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447476|gb|ACM51742.1| zinc finger CHC2-family protein [Chloroflexus sp. Y-400-fl]
          Length = 341

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 117/381 (30%), Gaps = 79/381 (20%)

Query: 15  IPISNLIGQY-VDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKG---FYYCFS--C 67
           I +  LI +  V   R         Y   CP H  +   +F    S+     ++CFS  C
Sbjct: 9   IDLPALIERLGVRLHRYGR-----SYRCACPLHAGDNELAFSIYQSRSGQWRWHCFSGDC 63

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK----------KEKIQTDL 117
              GD ++F+    G  + E+ Q L    GV  P   P   +            + Q  +
Sbjct: 64  GD-GDAIAFVRRYYGVGYREACQML----GVT-PASAPSGPRSPQPPPVEPPSAQWQHTV 117

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            RL++ A      +L +   +    YL +RG+    I    LGY P              
Sbjct: 118 GRLVDQAV----QALWSPAGQAARAYLYQRGLTDALIRRAGLGYHP-------------- 159

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
                     +  +          +   ++ P     G +     R LS  E        
Sbjct: 160 ------AATRIRAETLGLDGDNPYYPAGIVIPYW-VEGDLWRVQVRRLSNTEPRYL---- 208

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
                    +L    GA               S+  ++L EG +DVL++ QA    V + 
Sbjct: 209 ---------SLAGSSGA------PPYLIAPITSAKPLVLAEGPVDVLAIMQAAGDLVTAI 253

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG- 356
              A     +R + + +   ++           A +A D    +     +          
Sbjct: 254 GTGATGCRAVRWIARCAVAPLVLA------AHDADEAGDAAAAYWCDALQPRCTRWRPTL 307

Query: 357 EDPDSFIRCYGKTAFEKLIVE 377
            DP   ++  G     + I +
Sbjct: 308 HDPAEMLQLGGLALVRQWIEQ 328


>gi|260591246|ref|ZP_05856704.1| putative mobilizable transposon, excision protein [Prevotella
           veroralis F0319]
 gi|260537111|gb|EEX19728.1| putative mobilizable transposon, excision protein [Prevotella
           veroralis F0319]
          Length = 296

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 6/152 (3%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I ++   I I + +G  +     K     G Y    PF +E TPSF  + ++  +Y F+
Sbjct: 2   TINEIKA-ISIKDYLGS-MSIYPTKNYGYYGMYK--SPFRNEHTPSFKVDYNQNLWYDFA 57

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126
               G  +  +  L  CS +++++         LP +     K        I +I  +T+
Sbjct: 58  LDEGGSLIDLVMKLHNCSLVQAIELFNGKQN-NLPKLSIANSKTNSPSQSRIEIIS-STN 115

Query: 127 FFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158
             H +L      R       +           
Sbjct: 116 LCHPNLMEYFTHRGINLNIAKKYCREIHYRIG 147


>gi|212694184|ref|ZP_03302312.1| hypothetical protein BACDOR_03710 [Bacteroides dorei DSM 17855]
 gi|224026242|ref|ZP_03644608.1| hypothetical protein BACCOPRO_02998 [Bacteroides coprophilus DSM
           18228]
 gi|253572724|ref|ZP_04850124.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254882545|ref|ZP_05255255.1| DNA primase [Bacteroides sp. 4_3_47FAA]
 gi|317480884|ref|ZP_07939965.1| CHC2 zinc finger protein [Bacteroides sp. 4_1_36]
 gi|329965179|ref|ZP_08302110.1| CHC2 zinc finger domain protein [Bacteroides fluxus YIT 12057]
 gi|212663250|gb|EEB23824.1| hypothetical protein BACDOR_03710 [Bacteroides dorei DSM 17855]
 gi|224019478|gb|EEF77476.1| hypothetical protein BACCOPRO_02998 [Bacteroides coprophilus DSM
           18228]
 gi|251837624|gb|EES65715.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254835338|gb|EET15647.1| DNA primase [Bacteroides sp. 4_3_47FAA]
 gi|316902969|gb|EFV24842.1| CHC2 zinc finger protein [Bacteroides sp. 4_1_36]
 gi|328523542|gb|EGF50639.1| CHC2 zinc finger domain protein [Bacteroides fluxus YIT 12057]
          Length = 299

 Score = 69.5 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 74/217 (34%), Gaps = 19/217 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           MN  +         + I + +  + V   ++K NA    YW   PF DEKT SF  +  +
Sbjct: 1   MNIEQS------KKLSIIDFLDKENVTLKKKKGNA----YWYLSPFRDEKTASFKVSKKE 50

Query: 60  GFYYCFSCHVKGDHLSFLSA-LLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDL 117
             +Y ++    GD +  +       S  +++  LA+ +   +    +  I  KE   T +
Sbjct: 51  NLWYDYAIKEGGDLVELVKRMYNKQSVSDALAYLASKSIATVDKAIETAIAAKEYTTTKM 110

Query: 118 IRL------IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171
             +            +F     +    R++       ++         G   +       
Sbjct: 111 NDVKLLPLSNHSLLSYFSSRRIDITIGRMYCREIHYKVEQKHYYGIAFGNLSEGHEVRNP 170

Query: 172 HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208
           + +     ++  + A    +  N    ++ F + L +
Sbjct: 171 YFKGCIGHKDITLLAHTFNEWQNGCLVFEGFMDFLAY 207


>gi|78098658|gb|ABB20630.1| DnaG [Bifidobacterium asteroides]
          Length = 123

 Score = 69.5 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R         F  GYAP    +L  HL  KGF+++++++AGL   G      YD
Sbjct: 3   RKLLAGRTFSQADSAHFGCGYAPRGWDNLVRHLSTKGFTQQEMLDAGLARQGQR--GVYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L + +  + KY+N+P+T L+ K + LY    A + +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARKLYEDDGINAKYINTPDTQLYRKNQVLYGIDLAKDAI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|288920041|ref|ZP_06414361.1| TOPRIM domain protein [Frankia sp. EUN1f]
 gi|288348605|gb|EFC82862.1| TOPRIM domain protein [Frankia sp. EUN1f]
          Length = 407

 Score = 69.5 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 9  KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND-SKG--FYYCF 65
            +L    ++ L  +      + +   +  +    P H ++ PS       +G   + C 
Sbjct: 7  DAILDATDLATLATEKCG-TPQGSGR-RARWHCPNPAHPDEHPSMGIYQNQRGQWRWKCL 64

Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
          +C   G  +  +     C+ +E++  LA   G+
Sbjct: 65 ACGEGGTAIDLVMITESCTVLEALHNLADRTGL 97


>gi|194246806|ref|YP_002004445.1| DNA primase [Candidatus Phytoplasma mali]
 gi|193807163|emb|CAP18602.1| DNA primase [Candidatus Phytoplasma mali]
          Length = 390

 Score = 69.5 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 124/348 (35%), Gaps = 36/348 (10%)

Query: 55  CNDSKGFYYCFSCH--VKGDHLSFLSALLGCSFIESVQRLAAIAG-VPLPVVDPKIEKKE 111
            N S+  Y CF C      D       L   +F  + Q L      + L  +     +  
Sbjct: 43  VNHSQNMYKCFKCDNRFH-DIFDLYQELYQVNFNTAFQALINELDEIKLSPLIQNPHQFS 101

Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLH---YYLDERGIDSHAIEMFKLGYAPDSRYS 168
            +     +++  + +++H+ LKN          Y  ++R ++   I  FKLG AP +  +
Sbjct: 102 HLNKTKFKILTTSANYYHYLLKNYVPFNELALNYLQNQRQLNLTTINEFKLGLAPQTNSN 161

Query: 169 LREHLR------QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222
            +          +  F  + +    L I   N        ++     I   +  +I    
Sbjct: 162 YQFINILVNYLTKNNFDLDLVQFLNLAISTKNPHLKNFGLKDAFYNAIIIPKTALINQKI 221

Query: 223 RTLSKG--------ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFI 274
           + +S           + KYL      L      LY  F  L ++          N+   +
Sbjct: 222 QVISLKANLLKRQLNTPKYLEMKSNDLIKPRDYLYRLFEHLPFI----------NAKKQV 271

Query: 275 ILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKL---SPRIVLCFDGDDPGLRAA 331
           I+VE   DV+   Q  ++NV+S  G   T  QL+ +++    +  I++  D D  G   A
Sbjct: 272 IIVESEFDVIKSYQHQLKNVISICGKDFTNMQLKQIFQYIPKNYEILIILDHDYGGKIQA 331

Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESL 379
            K    +         V  ++L + +  D F+  Y     + ++ ++ 
Sbjct: 332 LKLY--LKLIQANYLVVKVIILPQYKSLDEFLDHYNLIELQLILNDAK 377


>gi|145708121|ref|YP_001165296.1| hypothetical protein RPRSA1_gp47 [Ralstonia phage phiRSA1]
 gi|139003910|dbj|BAF52424.1| conserved hypothetical phage protein [Ralstonia phage phiRSA1]
          Length = 934

 Score = 69.5 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 8   IKDLLIHIPISNLIGQYVDWD------RRKTNAVKGDYWACCPFHDEKTPSFHC---NDS 58
           I++L   I + +L  + +         +R     +  Y    P H +K PS      + +
Sbjct: 4   IEELKKRIDLHDL-AERLGIKRGPGAIKRGAGGDQALYH--SPLHADKNPSLSIFVNHPT 60

Query: 59  KGF-YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117
            G  +   S    G  +  +    G    ++V+ L     +P      + E++EK + + 
Sbjct: 61  HGTGWKEHSTGDGGSCIDLVILARGGDASDAVKWLHEAYAIPFDKPAGQPERREKSKAEY 120

Query: 118 I 118
           I
Sbjct: 121 I 121


>gi|78098656|gb|ABB20629.1| DnaG [Bifidobacterium subtile]
          Length = 123

 Score = 69.5 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R       E F  GYAP    +L  +L  KGF+++++++AGL   G      YD
Sbjct: 3   RKLLGGRNFSQADCERFGCGYAPQGWDNLVRYLAAKGFTQQEMLDAGLARQGQR--GVYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R  +PIR S G+ + FG R L   +++  KY+N+P+T L+ K + LY    A + +
Sbjct: 61  YFRGRATWPIRDSTGRTLGFGARKLYDDDTIGAKYINTPDTQLYRKTQVLYGIDLAKSAI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|78098710|gb|ABB20656.1| DnaG [Bifidobacterium coryneforme]
          Length = 123

 Score = 69.5 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R         F  GYAP    +L  HL  KGF+++++++AGL   G      YD
Sbjct: 3   RKLLAGRTFTQADSTHFGCGYAPRGWDNLVRHLSTKGFTQQEMLDAGLARQGQR--GIYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R+ +PIR S G+ + FG R L + +S+  KY+N+P+T L+ K + LY    A + +
Sbjct: 61  YFRGRVTWPIRDSTGRTLGFGARKLFEDDSIGAKYINTPDTQLYRKNQVLYGIDLAKDAI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|78098654|gb|ABB20628.1| DnaG [Bifidobacterium bifidum]
          Length = 123

 Score = 69.5 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200
              L  R       E F  GYAP    +L  +L  KGF+++++++AGL   G      YD
Sbjct: 3   RKLLGGRNFSRADCERFGCGYAPQGWDNLVRYLASKGFTQQEMLDAGLARQGQR--GVYD 60

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258
            FR R  +PIR S G+ + FG R L   + +  KY+N+P+T L+ K + LY    A + +
Sbjct: 61  YFRGRATWPIRDSTGRTLGFGARKLYDDDQIAAKYINTPDTQLYRKTQVLYGIDLAKSSI 120

Query: 259 QKS 261
            K 
Sbjct: 121 VKK 123


>gi|218131550|ref|ZP_03460354.1| hypothetical protein BACEGG_03170 [Bacteroides eggerthii DSM
          20697]
 gi|217986482|gb|EEC52819.1| hypothetical protein BACEGG_03170 [Bacteroides eggerthii DSM
          20697]
          Length = 287

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 11/83 (13%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I+++   I ISN +    Y   +R+        +W   P H EKT SF  + +K  +Y 
Sbjct: 2  TIQEIKA-IQISNFLASKGYEPINRKGNK-----WWYLSPLHTEKTASFKVDLTKNVWYD 55

Query: 65 FSCHVKGDHLSFLS---ALLGCS 84
          F+    G+ +            S
Sbjct: 56 FALGKGGNIIDLAMQLYHTQNIS 78


>gi|31983522|ref|NP_858133.1| putative DNA binding protein [Lactobacillus delbrueckii subsp.
           lactis]
 gi|18077756|emb|CAD15748.1| putative DNA binding protein [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 614

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/401 (13%), Positives = 104/401 (25%), Gaps = 61/401 (15%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK-GFYYCFSCH 68
           DL   + +   I   V  D +        +    P H +  PS   + +   + +CFSC 
Sbjct: 10  DLKGLVSLPEYIASVVSMDSKG------FFSCLNPNHPDNHPSMCLDPNHPQYVHCFSCG 63

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
           V  D                     A+    +         KEK   +   +     D +
Sbjct: 64  VSYDLFD----------------CWALINDGVTETKKNSAGKEKPVYNFNAVASEIADHY 107

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
            ++L                                +  + RE L     +  +      
Sbjct: 108 GYALIGDPAND--------LYSVEPPLPEPPAEPAQTSTNFREQLEDWHANLNQTDYLQK 159

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
                 +A  ++   + L   I    GQ   +  R L               +  + +  
Sbjct: 160 RGITQTTAEIFNLGYSPLTNSIIIPYGQDGYYVQRAL-------------NPIEKRDRYR 206

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT--EYQ 306
           +    A                   + +VEG  D LS+ Q      V++  +        
Sbjct: 207 FPIGQAR------AYNIEALAKCKTVFIVEGQFDALSIMQESDVGAVATSTSQTRLIVKA 260

Query: 307 LRLLWKL----SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS-RGEDPDS 361
           L+   +     +P I+L  D D  G +A      L       G       ++   +D + 
Sbjct: 261 LQKFKEQDPTINPTIILSMDNDRAGQKANRA---LQRDLEALGFTCYVNPVNGDYKDANE 317

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
           F+    +  F + +   +   D        +          
Sbjct: 318 FL-VKDREGFRQKLQHVINQPDNWLDNYYADIKKRHDYPDN 357


>gi|315607464|ref|ZP_07882460.1| DNA primase [Prevotella buccae ATCC 33574]
 gi|315250896|gb|EFU30889.1| DNA primase [Prevotella buccae ATCC 33574]
          Length = 296

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 12/177 (6%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I  +   I I + +G  +     K     G Y    PF +E TPSF  + ++  +Y F+
Sbjct: 2   TIDKIKA-ISIKDYLGS-MSIYPIKNYGYYGMYK--SPFRNEHTPSFKVDYNQNLWYDFA 57

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL------ 120
               G  +  +  L  CS I++++       + L        K        I +      
Sbjct: 58  LDEGGSIIDLVMKLHNCSLIQAIELFNGKQNI-LQKFSIANSKTNSPSQSHIEVVGSTNL 116

Query: 121 -IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
                 ++F H   N    + +       I   +                  + +  
Sbjct: 117 CHPNLIEYFTHRGINLNIAKKYCREIHYRIGDRSFYAIGFPNNSYGYTLRNPYFKGC 173


>gi|253682887|ref|ZP_04863675.1| putative DNA primase [Clostridium phage D-1873]
 gi|253560901|gb|EES90362.1| putative DNA primase [Clostridium phage D-1873]
          Length = 341

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 90/307 (29%), Gaps = 36/307 (11%)

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
           GD  + +  +    F ++V+ L  I G  L  +      K++ + D++ + + A      
Sbjct: 68  GDIFTLVMEIKKYEFPQAVKYLHEILG--LKYIFNIQYIKKEEKKDILDVFKKA------ 119

Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190
                  K+      +     +     ++   P           ++G          +  
Sbjct: 120 -----MQKKHFNNDIDELKIYNEDICREIIQIP------YIGWIREGIMPFTQERFNIGY 168

Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP-ETILFHKGKNLY 249
             D +  +                 + +   GRTL K   +  +        F K  NLY
Sbjct: 169 SRDKNRIAIPHRFWC------GKENEYVGVMGRTLVKNYDLLDIPKYFPLKAFPKSMNLY 222

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309
                  Y+QK          ++ II+ E    VL       +  V+  G  L   Q+R+
Sbjct: 223 GLQENYKYIQK----------ANKIIVFEAEKSVLKAHSFLCRLGVALGGHELCPEQIRI 272

Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
           L  L   I+   D D     +      +            + LL   + P        K 
Sbjct: 273 LLGLDVEIIFAMDNDMDEQLSINMCNQVKSFRRTSYIYDKWGLLGEKDSPVDKGMKVFKA 332

Query: 370 AFEKLIV 376
            +   I 
Sbjct: 333 LYNNRIK 339


>gi|238025787|ref|YP_002910018.1| Zinc finger, CHC2-type [Burkholderia glumae BGR1]
 gi|237874981|gb|ACR27314.1| Zinc finger, CHC2-type [Burkholderia glumae BGR1]
          Length = 931

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 8/115 (6%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC---NDSKGF-YY 63
           I +L   I + +L  +     +R     +  Y    P H++K+PS      +   G  + 
Sbjct: 4   IDELKQRIDLHDLADRLGM--KRGRGGDRALYH--SPQHEDKSPSLSIFVNHPKHGTGWR 59

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
             S    G  +  +    G S  ++V+ L    G+P        E++EK + D I
Sbjct: 60  DHSADTGGSCVDLVMYARGGSVADAVRYLHDAYGIPTTAPAAAGERREKSKIDYI 114


>gi|10956542|ref|NP_039667.1| primase-helicase [Lactobacillus delbrueckii subsp. bulgaricus]
 gi|7385176|gb|AAF61724.1|AF236060_1 primase-helicase [Lactobacillus delbrueckii subsp. bulgaricus]
          Length = 688

 Score = 68.8 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/401 (13%), Positives = 109/401 (27%), Gaps = 60/401 (14%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK-GFYYCFSCH 68
           DL   + +   I   V  D +        +    P H +K PS   + +   + +CFSC 
Sbjct: 10  DLKSLVSLPEYIASVVSMDSKG------FFSCLNPNHPDKHPSMCVDRNHPQYVHCFSCG 63

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
           V  D                 + +  +  +           KEK   +   +     D +
Sbjct: 64  VSYD-----------------RLIVGLLLMTAQRPRKNSTGKEKPVYNFNAVASEIADHY 106

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
            ++L       L+                       +  + R+ L     +  +      
Sbjct: 107 GYALIGDPANDLYSVEPPLPEPPAEPAQ------TQTSTNFRDQLEAWHANLNQTDYLQK 160

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
                 +A  ++   + L   I    GQ   +  R L               +    +N 
Sbjct: 161 RGITQTTAEIFNLGYSPLTNSIIIPYGQDGYYVQRAL-------------NPIEKHDRNR 207

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT--EYQ 306
           +    A                   + +VEG  D LS+ Q      V++  +        
Sbjct: 208 FPIGQAR------AYNIEALAKCKTVFIVEGQFDALSIMQESGVGAVATSTSQTRLIVKT 261

Query: 307 LRLLWKL----SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS-RGEDPDS 361
           L+   +     +P I+L  D D  G +A      L       G       ++   +D + 
Sbjct: 262 LQKFKEQDPTINPTIILSMDNDRAGQKANRA---LQRDLEALGFTCYVNPVNGDYKDANE 318

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
           F+    +  F + +   +   D    +   +          
Sbjct: 319 FL-VKDREGFRQKLQHVINQPDNWLDKYYADIKQRHDYPDN 358


>gi|256840915|ref|ZP_05546423.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738187|gb|EEU51513.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 300

 Score = 68.8 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 15/99 (15%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I  +   +P+++ + +  Y             + W   P+  E+TPSF  N +K  +Y F
Sbjct: 6   IDAVRQ-MPLADFLARLGYEPVRSSGN-----ELWYIAPYRGERTPSFRVNVAKQLWYDF 59

Query: 66  SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100
                GD  +    FL       F++  + +A  A + +
Sbjct: 60  GLGKGGDIFTLAGEFLQ---SDDFMKQAKFIAEAANMTV 95


>gi|319641676|ref|ZP_07996359.1| DNA primase [Bacteroides sp. 3_1_40A]
 gi|317386650|gb|EFV67546.1| DNA primase [Bacteroides sp. 3_1_40A]
          Length = 314

 Score = 68.8 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 7  FIKDLLIHIPISNLIGQYVDWDRRKTNAV---KGDYWACCPFHDEKTPSFHCNDSKGFYY 63
           I ++   + I          +          +G+YW   PF  E +PSF+ + +K  + 
Sbjct: 2  TIDEIKS-VSIVQF------LETEGYQYAYIHRGNYWYLSPFRAESSPSFNVSPTKNLWN 54

Query: 64 CFSCHVKGDHLSFLSAL 80
           F  +  G+ ++ +  +
Sbjct: 55 DFGANSGGNIINLVQKM 71


>gi|254885336|ref|ZP_05258046.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254838129|gb|EET18438.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 171

 Score = 68.8 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 13 IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72
            IP+ +++  Y  ++  +       Y    PF  + +PSF     +  +Y F     G 
Sbjct: 7  NSIPLGDILSHY-GYEPSRRYGGYDMYR--SPFRSDTSPSFKVFREENRWYDFGDGTYGR 63

Query: 73 HLSFLSALLGCSFIESVQRLAAI 95
           +  +  +  CSF ++++ L  +
Sbjct: 64 AVDLVMRVENCSFPQAMKELGRM 86


>gi|302326135|gb|ADL25336.1| DNA primase domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 371

 Score = 68.8 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 40  WACCPF-----HDEKTPSFHCNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIESVQRLA 93
              C F     H ++TPS   ++ +G + C+ C  V+GD +S +  +  CSF+E++  L 
Sbjct: 11  RCRCFFPTRHAHGDRTPSVSFSEERGTFRCWVCDDVRGDVISLVQFVKNCSFLEALNWLK 70

Query: 94  AIAGVPLPVVDPKIEKK 110
              G  L    P+++ +
Sbjct: 71  ETYGFLLRGAKPQVQNR 87


>gi|332142973|ref|YP_004428711.1| DNA primase [Alteromonas macleodii str. 'Deep ecotype']
 gi|332142982|ref|YP_004428720.1| DNA primase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552995|gb|AEA99713.1| DNA primase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553004|gb|AEA99722.1| DNA primase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 131

 Score = 68.8 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 78  SALLGCSFIESVQRLAAIAGVPLPVVDPK----IEKKEKIQTDLIRLIEVATDFFHHSLK 133
                  F+E+++ LA   G+ +P          E+K++ Q D   ++E    FF H L+
Sbjct: 1   MEFDRLEFVEAIEELARYHGLEVPREKGSRPAMSEEKKQQQQDDYAVMEQVARFFQHQLR 60

Query: 134 NA-RDKRLHYYLDERGIDSHAIEMFKLGYAPD 164
                K+   YL  RG+    ++ +++GYAPD
Sbjct: 61  QNGNSKKAIEYLKNRGLSGDIVKQWEIGYAPD 92


>gi|254994147|ref|ZP_05276337.1| DNA primase [Listeria monocytogenes FSL J2-064]
          Length = 115

 Score = 68.8 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 53/120 (44%), Gaps = 12/120 (10%)

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
           + ++  + L+++L   F E     P +    + +     L+  L+  +            
Sbjct: 3   FYHDNYKALYTYLIGYFAEGNDADPTKFMDSVPDATMKGLISSLEMVIS----------- 51

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                +  ++  +   KRF+ L ++K+E+E+++A +  + + +    ++  + +++ Q++
Sbjct: 52  PDEQGKTQFEDYIRSLKRFK-LEQKKKELEQELATLNRENDKDNEIRVMLEIVQLNRQLN 110


>gi|291280739|ref|YP_003497573.1| hypothetical protein DEFDS_P197 [Deferribacter desulfuricans SSM1]
 gi|290755441|dbj|BAI81817.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 447

 Score = 68.8 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 10/111 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDR---RKTNAVKGDYWACCPFHDEKTPSFHCND 57
           M Y +  +  L   I   + + ++        R +      Y    PF +EKTPSF  + 
Sbjct: 1   MKYNKKLLDYLKTEINFKDFLIEFGYISPQDIRNSYLNSESYMCRTPFGNEKTPSFAISK 60

Query: 58  SKG---FYYCFS----CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
                  +Y FS     H  G  + F+      S  ES+  L    G  +P
Sbjct: 61  KSDGVWVWYDFSVNGITHEGGTIIDFIQKYHNYSLSESINFLVEKLGNRIP 111


>gi|260592929|ref|ZP_05858387.1| putative mobilizable transposon, excision protein [Prevotella
          veroralis F0319]
 gi|260535129|gb|EEX17746.1| putative mobilizable transposon, excision protein [Prevotella
          veroralis F0319]
          Length = 296

 Score = 68.8 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 8  IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
          I+++   I I++         ++           +W C P  +E TPSF  N  +  +Y 
Sbjct: 3  IQNIKQ-ISITDY------LQQQGYSPARVQGIHFWYCSPLRNESTPSFKVNTERNQWYD 55

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRL 92
          F     GD +  + AL  C+  E++  L
Sbjct: 56 FRTGEHGDIIDLVCALHRCTISEAIGLL 83


>gi|189461210|ref|ZP_03009995.1| hypothetical protein BACCOP_01857 [Bacteroides coprocola DSM 17136]
 gi|189432124|gb|EDV01109.1| hypothetical protein BACCOP_01857 [Bacteroides coprocola DSM 17136]
          Length = 300

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 15/99 (15%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I  +   +P+++ + +  +    R        + W   P+  E+T SF  N +K  +Y F
Sbjct: 6   IDAVR-RMPLADFLARLGHEPVRRSGN-----ELWYLAPYRGERTSSFRVNVAKQLWYDF 59

Query: 66  SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100
                GD  +    FL       F++  + +A  A + +
Sbjct: 60  GLGKGGDIFTLAGEFLQ---SDDFMKQAKFIAEAANMTV 95


>gi|53711405|ref|YP_097397.1| hypothetical protein BF0114 [Bacteroides fragilis YCH46]
 gi|154490897|ref|ZP_02030838.1| hypothetical protein PARMER_00814 [Parabacteroides merdae ATCC
           43184]
 gi|167762719|ref|ZP_02434846.1| hypothetical protein BACSTE_01077 [Bacteroides stercoris ATCC
           43183]
 gi|189464450|ref|ZP_03013235.1| hypothetical protein BACINT_00792 [Bacteroides intestinalis DSM
           17393]
 gi|198277359|ref|ZP_03209890.1| hypothetical protein BACPLE_03571 [Bacteroides plebeius DSM 17135]
 gi|212692161|ref|ZP_03300289.1| hypothetical protein BACDOR_01656 [Bacteroides dorei DSM 17855]
 gi|218131469|ref|ZP_03460273.1| hypothetical protein BACEGG_03087 [Bacteroides eggerthii DSM 20697]
 gi|265766678|ref|ZP_06094507.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|294647712|ref|ZP_06725274.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CC 2a]
 gi|294805912|ref|ZP_06764780.1| CHC2 zinc finger domain protein [Bacteroides xylanisolvens SD CC
           1b]
 gi|298377056|ref|ZP_06987010.1| mobilizable transposon [Bacteroides sp. 3_1_19]
 gi|298483577|ref|ZP_07001753.1| mobilizable transposon excision protein [Bacteroides sp. D22]
 gi|301309299|ref|ZP_07215242.1| putative mobilizable transposon, excision protein [Bacteroides sp.
           20_3]
 gi|313149951|ref|ZP_07812144.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|325299654|ref|YP_004259571.1| hypothetical protein Bacsa_2561 [Bacteroides salanitronis DSM
           18170]
 gi|52214270|dbj|BAD46863.1| TraP [Bacteroides fragilis YCH46]
 gi|154088645|gb|EDN87689.1| hypothetical protein PARMER_00814 [Parabacteroides merdae ATCC
           43184]
 gi|167699059|gb|EDS15638.1| hypothetical protein BACSTE_01077 [Bacteroides stercoris ATCC
           43183]
 gi|189438240|gb|EDV07225.1| hypothetical protein BACINT_00792 [Bacteroides intestinalis DSM
           17393]
 gi|198269857|gb|EDY94127.1| hypothetical protein BACPLE_03571 [Bacteroides plebeius DSM 17135]
 gi|212665282|gb|EEB25854.1| hypothetical protein BACDOR_01656 [Bacteroides dorei DSM 17855]
 gi|217986401|gb|EEC52738.1| hypothetical protein BACEGG_03087 [Bacteroides eggerthii DSM 20697]
 gi|263253055|gb|EEZ24531.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|292636955|gb|EFF55411.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CC 2a]
 gi|294446885|gb|EFG15484.1| CHC2 zinc finger domain protein [Bacteroides xylanisolvens SD CC
           1b]
 gi|298266040|gb|EFI07699.1| mobilizable transposon [Bacteroides sp. 3_1_19]
 gi|298270334|gb|EFI11919.1| mobilizable transposon excision protein [Bacteroides sp. D22]
 gi|300832744|gb|EFK63371.1| putative mobilizable transposon, excision protein [Bacteroides sp.
           20_3]
 gi|313138718|gb|EFR56078.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313158589|gb|EFR57983.1| CHC2 zinc finger domain protein [Alistipes sp. HGB5]
 gi|324319207|gb|ADY37098.1| hypothetical protein Bacsa_2561 [Bacteroides salanitronis DSM
           18170]
          Length = 300

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 15/99 (15%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I  +   +P+++ + +  +    R        + W   P+  E+T SF  N +K  +Y F
Sbjct: 6   IDAVR-RMPLADFLARLGHEPVRRSGN-----ELWYLAPYRGERTSSFRVNVAKQLWYDF 59

Query: 66  SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100
                GD  +    FL       F++  + +A  A + +
Sbjct: 60  GLGKGGDIFTLAGEFLQ---SDDFMKQAKFIAEAANMTV 95


>gi|256845762|ref|ZP_05551220.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|256719321|gb|EEU32876.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
          Length = 561

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 109/361 (30%), Gaps = 50/361 (13%)

Query: 27  WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL-SALLGCSF 85
             R+  N  K  +    P H++K PS      K    CF+C    D    +       +F
Sbjct: 235 LQRKGIN-TKELFRCVSPEHEDKNPSMSFYKKKNKCTCFACGKNYDIFDLVKMEYGLKTF 293

Query: 86  IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145
            E +++        +       E  E     +               K   + RL+  + 
Sbjct: 294 PEQLKK--------VEEFMKNPELIEDANKTIYS-------------KKNIEIRLNSTIQ 332

Query: 146 ERGIDSH--AIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR 203
           E+ ++ +    E +        R S  ++L+++G S+E   +  +  D D          
Sbjct: 333 EKKVEENKIYPEFYYYYRDCKKRISETDYLQKRGISKEVQDKYNIGYDTDFKEGKMKFPI 392

Query: 204 NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIR 263
             +I PI         +  R ++     +Y    E  +F+                    
Sbjct: 393 QAIIIPISKDS-----YTVRNINSASKFRYTKVGEAAIFN-------------------Y 428

Query: 264 KDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDG 323
            ++ +N      +VEG +D LS+ +AG +  ++          +  L +           
Sbjct: 429 WELEQNRKDTFYIVEGEIDALSIIEAGRK-SIALGSVNEVNLLVNKLKEDKFNNKFILML 487

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D+      ++ I       I  N      L + +D + F+    +               
Sbjct: 488 DNDEKGKMWQEILYTKLKEIGINVEKSNALGKYKDANEFLIKDREKFLALFQEIEKENPW 547

Query: 384 M 384
            
Sbjct: 548 K 548


>gi|237710792|ref|ZP_04541273.1| TraP [Bacteroides sp. 9_1_42FAA]
 gi|317474117|ref|ZP_07933394.1| hypothetical protein HMPREF1016_00373 [Bacteroides eggerthii
           1_2_48FAA]
 gi|229455514|gb|EEO61235.1| TraP [Bacteroides sp. 9_1_42FAA]
 gi|316909688|gb|EFV31365.1| hypothetical protein HMPREF1016_00373 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 299

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 71/216 (32%), Gaps = 13/216 (6%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I+ +    PI + + +  +    RR   A    Y + C   +E TPSF  N  K  ++ F
Sbjct: 5   IEAMK-RFPIEDFLARLGHHPVQRR---ANAVWYRSPC--REEHTPSFKVNPEKNLWFDF 58

Query: 66  SCHVKGDHLSFLSA-LLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----DLIRL 120
                G+  +     +    F+   + +A +AG+P+   +P+             + + +
Sbjct: 59  GEGKGGNIFALAGEFIKSSDFLTQAKYVAEVAGMPVQDYEPRNIVDTHRSDGHSFEDVEV 118

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           + +      H L+           + + I            A  +     E         
Sbjct: 119 LPLQNRALLHYLQERGIPSAVAIANCKEIHYTTHGKRYFAVAFGNEGGGYEIRNPFFKGC 178

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQ 216
               +  LL  G ++   Y+ F + L        G+
Sbjct: 179 VPPKDVTLLSVGSDACNVYEGFMDYLSARALGIGGR 214


>gi|150003486|ref|YP_001298230.1| putative DNA primase [Bacteroides vulgatus ATCC 8482]
 gi|149931910|gb|ABR38608.1| putative DNA primase [Bacteroides vulgatus ATCC 8482]
          Length = 305

 Score = 68.4 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 13 IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72
            IP+ +++  Y  ++  +       Y    PF  + +PSF     +  +Y F     G 
Sbjct: 7  NSIPLGDILSHY-GYEPSRRYGGYDMYR--SPFRSDTSPSFKVFREENRWYDFGDGTYGR 63

Query: 73 HLSFLSALLGCSFIESVQRLAAI 95
           +  +  +  CSF ++++ L  +
Sbjct: 64 AVDLVMRVENCSFPQAMKELGRM 86


>gi|118578659|ref|YP_899909.1| zinc finger, CHC2-family protein [Pelobacter propionicus DSM 2379]
 gi|118501369|gb|ABK97851.1| zinc finger, CHC2-family protein [Pelobacter propionicus DSM 2379]
          Length = 171

 Score = 68.4 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 15/90 (16%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I       PI+++I              KG Y  CCPFH+++ PS    +     
Sbjct: 95  ISPEMIDQARQ-YPITSIIE-----------FSKGRYR-CCPFHEDRNPSMALYE--NHV 139

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
           +CF C+   D +S   AL G +F E+V  L
Sbjct: 140 HCFVCNRTWDSISATMALDGVTFREAVLAL 169


>gi|262360745|gb|ACY57466.1| DNA primase [Yersinia pestis D106004]
          Length = 100

 Score = 68.4 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 78  SALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135
                  F+ES++ LA + G+ +P        + +   +  L +L+E  + F+  SLK  
Sbjct: 1   MNYDRLEFVESIEELATMHGLEVPYEAGSGTTQIERHQRQSLYQLMESLSAFYQQSLKGQ 60

Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPD 164
             K+   YL  RG+       F   +   
Sbjct: 61  NAKQAREYLKHRGLSRRNHPTFCYRFCAP 89


>gi|300779292|ref|ZP_07089150.1| DNA primase [Chryseobacterium gleum ATCC 35910]
 gi|300504802|gb|EFK35942.1| DNA primase [Chryseobacterium gleum ATCC 35910]
          Length = 277

 Score = 68.0 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 96/285 (33%), Gaps = 16/285 (5%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
           +++   I I  ++  + +    K N     Y+A     +E+TPS   +  K   + F   
Sbjct: 4   EEIKQKIGIRTVLESF-NLFPSKENRRTAFYFAI--DREERTPSLSVDFVKNRAFDFGTG 60

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL-IRLIEVA-TD 126
              D +S +  +  CS  ++++ LA   G  +        +K     +L   +++ +   
Sbjct: 61  KSYDVISIVQQINQCSVSDALKYLA-RFGFSV----QNDIQKVDSNQELEYEILKTSEIR 115

Query: 127 FFH--HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
            F     L + R       + E     +  + F +G+  DS     E   +         
Sbjct: 116 HFALVQYLTSRRVYEQKDLVREIHYKMNGKKYFGIGFLNDS--GGFEIRNKYSKICLSKK 173

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
           +  L+   +N+      F     +    +  +  +     +    S+ +    E   ++K
Sbjct: 174 DVTLIKTQNNNFDEIAIFEGFFDYLTYRNMEKEQSSDY-LILNSTSMLFKVENELKKYNK 232

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289
              L+    +     KS  +   +N     ++ E Y D+      
Sbjct: 233 IS-LFLDNDSNGKSVKSKIEKRYKNVEDCSVIYESYNDLNEWYCN 276


>gi|293370759|ref|ZP_06617305.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CMC 3f]
 gi|292634119|gb|EFF52662.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CMC 3f]
          Length = 230

 Score = 68.0 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 7  FIKDLLIHIPISNLIGQYVDWDRRKTNAV---KGDYWACCPFHDEKTPSFHCNDSKGFYY 63
           I ++   + I          +          +G+YW   PF  E +PSF+ + +K  + 
Sbjct: 2  TIDEIKS-VSIVQF------LETEGFQYAYIHRGNYWYLSPFRAESSPSFNVSPTKNLWN 54

Query: 64 CFSCHVKGDHLSFLSAL 80
           F  +  G+ ++ +  +
Sbjct: 55 DFGANSGGNIINLVQKM 71


>gi|237726719|ref|ZP_04557200.1| DNA primase [Bacteroides sp. D4]
 gi|229435245|gb|EEO45322.1| DNA primase [Bacteroides dorei 5_1_36/D4]
          Length = 306

 Score = 68.0 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 13 IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72
            IP+ +++  Y  ++  +       Y    PF  + +PSF     +  +Y F     G 
Sbjct: 7  NSIPLGDILSHY-GYEPSRRYGGYDMYR--SPFRSDTSPSFKVFKQENRWYDFGDGTYGR 63

Query: 73 HLSFLSALLGCSFIESVQRLAAI 95
           +  +  +  CSF ++++ L  +
Sbjct: 64 AVDLVMRVENCSFPQAMKELGRM 86


>gi|229142499|ref|ZP_04270987.1| Zinc finger, CHC2-like protein [Bacillus cereus BDRD-ST26]
 gi|228640945|gb|EEK97288.1| Zinc finger, CHC2-like protein [Bacillus cereus BDRD-ST26]
          Length = 199

 Score = 68.0 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 10/124 (8%)

Query: 9   KDLLIHIPISNLIGQY--VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF- 65
             +   +PI + + +Y      ++  N     Y   CPFHD+K  S   N S    +C+ 
Sbjct: 5   DLIKSKLPIIDFLERYCGTTVRKKGKN-----YMCRCPFHDDKEDSMVVNISSDNCWCYA 59

Query: 66  SCHVKG--DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
            C      DH S L  L G +  E+   L     + + +    ++K+   Q  + + ++ 
Sbjct: 60  GCGDGKQIDHFSGLMLLHGWTHTEAQNYLLKELNLNVTLNRKTMQKEIAKQKAIHKKMQQ 119

Query: 124 ATDF 127
             D 
Sbjct: 120 IKDL 123


>gi|295105109|emb|CBL02653.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii SL3/3]
          Length = 202

 Score = 68.0 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
           CC FH +  PS   ND+  +YYCF C   GD +   + L   +  ++ ++L    G+   
Sbjct: 33  CCLFHSDNHPSMKLNDT--YYYCFGCGANGDAIDLTAKLFDLTPRQAAEKLIHDFGLDPD 90

Query: 102 VV 103
             
Sbjct: 91  KP 92


>gi|237713495|ref|ZP_04543976.1| DNA primase [Bacteroides sp. D1]
 gi|262407280|ref|ZP_06083828.1| DNA primase [Bacteroides sp. 2_1_22]
 gi|229446477|gb|EEO52268.1| DNA primase [Bacteroides sp. D1]
 gi|262354088|gb|EEZ03180.1| DNA primase [Bacteroides sp. 2_1_22]
          Length = 318

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 85/265 (32%), Gaps = 22/265 (8%)

Query: 17  ISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
           I++ + +  Y+   ++  N     +W   P H+E T SF  N  K  +Y F     G   
Sbjct: 41  IADFLAEKGYLPISKKGAN-----WWYLSPLHNENTASFKVNVDKNVWYDFGLGKGGGLA 95

Query: 75  SFLSALLGC-----SFIESVQRLAAIAGVPLPVVD-PKIEKKEKIQTDLIRLIEVATDFF 128
           + +           +F +    L  ++G+       PK  ++       + +  +A    
Sbjct: 96  TLV----NLLYHPNNFQD---YLHHLSGIRTSFPSTPKTTREGSETFSNVEVKSLANSAL 148

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
              L      +       + +     +         +R    E             +  +
Sbjct: 149 LKYLGKRGIAQQVASQYCKEVHYQNRDKSYFAVGFPNRSGGYEIRNAYFKGCISPKDISV 208

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
           +  G+     ++ F + L + +       I      ++  +S+ YLN  +T+  H   + 
Sbjct: 209 ISKGNKDCHVFEGFIDFLSYVVLHGDCDAIVLNS-VINVPKSIDYLNRYDTVYCHLDNDK 267

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSF 273
                A   ++   + +V   S  +
Sbjct: 268 AGHD-ATEQIRILCKGNVIDASEEY 291


>gi|254884673|ref|ZP_05257383.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837466|gb|EET17775.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 172

 Score = 67.6 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 13 IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72
            IP+ +++  Y  ++  +       Y    PF  + +PSF     +  +Y F     G 
Sbjct: 7  NSIPLGDILSHY-GYEPSRRYGGYDMYR--SPFRSDTSPSFKVFKQENRWYDFGDGTYGR 63

Query: 73 HLSFLSALLGCSFIESVQRLAAI 95
           +  +  +  CSF ++++ L  +
Sbjct: 64 AVDLVMRVENCSFPQAMKELGRM 86


>gi|29566077|ref|NP_817647.1| gp58 [Mycobacterium phage Bxz2]
 gi|29424802|gb|AAN01812.1| gp58 [Mycobacterium phage Bxz2]
          Length = 135

 Score = 67.6 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 17 ISNLIGQYVD-WD--RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDH 73
          I  +I +Y   W+  R+  N         CPFH ++TPS   +     + CF+C VKG  
Sbjct: 7  IVKVIHRYHPEWEPPRQGRNDW---MKTRCPFHGDETPSASISFKHNAFRCFACPVKGSA 63

Query: 74 LSFLSALLGCSFIESVQRLAAI 95
          ++ +      S+ E+ +R+A  
Sbjct: 64 VAIIKEQEEVSYAEA-KRIAEE 84


>gi|218778126|ref|YP_002429444.1| P4 alpha zinc-binding domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759510|gb|ACL01976.1| P4 alpha zinc-binding domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 333

 Score = 67.6 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 63/192 (32%), Gaps = 28/192 (14%)

Query: 27  WDRRKTNAVKGDYWACCPFH--DEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS 84
             +   +   G++   CP    +++   F     +G Y+C  C   GD + +L    G +
Sbjct: 17  LKKV-ASTHGGEFAGPCPSCGGEDR---FRVWPEQGRYWCRGCARSGDAIQYLWDFKGIA 72

Query: 85  FIESVQRLAA-------IAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF---HHSLKN 134
           ++E+   L            +  PV  PK               E A+ F       L  
Sbjct: 73  YMEACFALGQEPKATTGRLKLK-PVWAPKDAGIPNP-----SWHEKASAFLVWTQEQLWT 126

Query: 135 ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL------RQKGFSEEKIIEAGL 188
                   +L  RGI    I+   LG+ P   Y  RE        ++ G  +   +  GL
Sbjct: 127 DEGGEARAFLHNRGIQDATIKKAGLGWNPTDAYRDREAWGLEPEIKENGRPKGLWLPKGL 186

Query: 189 LIDGDNSATSYD 200
           +I    +     
Sbjct: 187 VIPCRINEKPIR 198


>gi|39997265|ref|NP_953216.1| CHC2 zinc finger domain-containing protein [Geobacter
           sulfurreducens PCA]
 gi|39984155|gb|AAR35543.1| CHC2 zinc finger domain protein [Geobacter sulfurreducens PCA]
          Length = 171

 Score = 67.6 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 15/90 (16%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
             ++ I       PI+++I              KG Y  CCPFH+++ PS    +     
Sbjct: 95  ITQEMIDQARQ-YPITSIIE-----------FSKGRYR-CCPFHEDRNPSMALYE--NHV 139

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
           +CF C+   D +S   AL G +F E+V  L
Sbjct: 140 HCFVCNRTWDSISATMALDGVTFREAVLAL 169


>gi|288801537|ref|ZP_06406986.1| mobilizable transposon, excision protein [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288331525|gb|EFC70014.1| mobilizable transposon, excision protein [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 330

 Score = 67.6 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 8/115 (6%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            + +  +    PI   + +       +       Y    PF ++  PSF  +  K  +  
Sbjct: 3   EEDLSRIK-RYPIVEYLERK-GIKPVRRTPAYALYR--SPFREDTHPSFKVDTEKNLWID 58

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA----GVPLPVVDPKIEKKEKIQT 115
           ++    G  +     L GC+  E+++ L   A     VP         K+E I+ 
Sbjct: 59  YAEGKGGSIIDLCMRLKGCTLSEAIRILGQNAPDITHVPRRESVQGSSKQESIRQ 113


>gi|255014539|ref|ZP_05286665.1| DNA primase [Bacteroides sp. 2_1_7]
          Length = 314

 Score = 67.6 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 7  FIKDLLIHIPISNLIGQYVDWDRRKTNAV---KGDYWACCPFHDEKTPSFHCNDSKGFYY 63
           I ++   + I          +          +G+YW   PF  E +PSF+ + +K  + 
Sbjct: 2  TIDEIKS-VSIVQF------LETEGYQYAYIHRGNYWYLSPFRAESSPSFNVSPTKNLWN 54

Query: 64 CFSCHVKGDHLSFLSAL 80
           F     G+ ++ +  +
Sbjct: 55 DFGASSGGNIINLVQKM 71


>gi|330815080|ref|YP_004358785.1| zinc finger CHC2-family protein [Burkholderia gladioli BSR3]
 gi|327367473|gb|AEA58829.1| zinc finger CHC2-family protein [Burkholderia gladioli BSR3]
          Length = 930

 Score = 67.2 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63
           I +L   I +  L  + +   R      +  Y    P H++++PS          G  + 
Sbjct: 4   IDELKQRIDLHEL-AERLGLKR-GRGGERALYH--SPHHEDRSPSLSIYVDHPKHGTGWR 59

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117
             S    G  +  +    G S  ++++ L    G+           + + ++ L
Sbjct: 60  DHSADAGGSCVDLVMHARGGSLADALRYLHDSYGI---AATRPATAERRPKSTL 110


>gi|323126206|gb|ADX30671.1| gp58 [Mycobacterium phage Wonder]
          Length = 135

 Score = 67.2 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 17 ISNLIGQYVD-WD--RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDH 73
          I  +I +Y   W+  R+  N         CPFH ++TPS   +     + CF+C VKG  
Sbjct: 7  IVKVIHRYHPEWEPPRQGRNDW---MKTRCPFHGDETPSASISFKHNAFRCFACPVKGSA 63

Query: 74 LSFLSALLGCSFIESVQRLAAI 95
          ++ +      S+ E+ +R+A  
Sbjct: 64 VAIIKEQEEVSYAEA-KRIAEE 84


>gi|288801891|ref|ZP_06407333.1| mobilizable transposon, excision protein [Prevotella
          melaninogenica D18]
 gi|288335933|gb|EFC74366.1| mobilizable transposon, excision protein [Prevotella
          melaninogenica D18]
          Length = 326

 Score = 67.2 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 4/95 (4%)

Query: 5  RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           + +  +    PI   + +       +       Y    P  +E  PSF  +  K  +  
Sbjct: 3  EEDLSRIK-RYPIVEYLERK-GIKPVRKTPTYAMYR--SPLREETHPSFKVDTEKNLWID 58

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
          +     G  +     + GC+  E+++RL   A + 
Sbjct: 59 YGEGRGGSIIDLCMRMEGCTLSEAIRRLGQNASLD 93


>gi|323344386|ref|ZP_08084611.1| DNA primase [Prevotella oralis ATCC 33269]
 gi|323094513|gb|EFZ37089.1| DNA primase [Prevotella oralis ATCC 33269]
          Length = 296

 Score = 66.8 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 12/166 (7%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I ++   I I + +G  +     K     G Y    PF +E TPSF  + ++  +Y F+
Sbjct: 2   TIDEIKA-ISIKDYLGS-MSIYPIKNYGYYGMYK--SPFRNEHTPSFKVDYNQNLWYDFA 57

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL------ 120
               G  +  +  L  CS I++++       + LP +     +        I +      
Sbjct: 58  LDEGGSLIDLVKKLHNCSLIQAIELFNGKQNI-LPKLSIANSETNSPSQSRIEIIGSTFL 116

Query: 121 -IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
                 ++F H   N    + +       I   +            
Sbjct: 117 CHPNLIEYFTHRGINLNIAKKYCKEIHYRIGDRSFYAIGFPNNSYG 162


>gi|269838276|ref|YP_003320504.1| P4 alpha zinc-binding domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787539|gb|ACZ39682.1| P4 alpha zinc-binding domain protein [Sphaerobacter thermophilus
           DSM 20745]
          Length = 220

 Score = 66.8 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 16/122 (13%)

Query: 10  DLLIHIPISNLI--GQYVDWDRRK--TNAVKGDYWACCPFHDEKTPSFHCND--SKGFYY 63
           ++     I  ++    ++ +  R         ++   CP+   +   F        G++ 
Sbjct: 96  EVRERADIVQVLTESGHMVYSTRGYSKRREAEEWAGPCPWCGGRD-RFRVWRGRDSGYW- 153

Query: 64  CFSCHVKGDHLSFLSALLGC-----SFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
           C  C + GD ++ +            F  +V  LA + G+PLP       ++ + +  + 
Sbjct: 154 CRQCGMAGDVIALVR---NLVPGCEDFYPAVGYLARMLGLPLPTTQNAQARRSRKRRPVT 210

Query: 119 RL 120
           R+
Sbjct: 211 RI 212


>gi|312144663|ref|YP_003996109.1| DnaB domain protein helicase domain protein [Halanaerobium sp.
           'sapolanicus']
 gi|311905314|gb|ADQ15755.1| DnaB domain protein helicase domain protein [Halanaerobium sp.
           'sapolanicus']
          Length = 462

 Score = 66.8 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 63/172 (36%), Gaps = 4/172 (2%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
             +K +   + S +E  LL  L+ +P  + E    L    + + + Q ++  L   + + 
Sbjct: 6   RSIKAQEEDRYSKKEYQLLGILLQYPDKIDEVADVLETKHFLDPQAQIIFDLLLKQYQQD 65

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 ++   L  +      +++  ++             I  +++ YQ+  +L  R  
Sbjct: 66  NKISRTKLLIDLQGQNAVAKPEEIIERLTSGFNTVDELSPTIDLIKKDYQR--SLLNRAS 123

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
              ++  + +            E      S  +++   I+ +E  EA++E F
Sbjct: 124 SKIKELTQADDLSIDDYQAKAQEIIFQATSESNDLQKHIYNME--EALMESF 173


>gi|303245320|ref|ZP_07331604.1| P4 alpha zinc-binding domain protein [Desulfovibrio fructosovorans
           JJ]
 gi|302493169|gb|EFL53031.1| P4 alpha zinc-binding domain protein [Desulfovibrio fructosovorans
           JJ]
          Length = 549

 Score = 66.8 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 101/361 (27%), Gaps = 59/361 (16%)

Query: 32  TNAVKGDYWACCPFH--DEKTPSFHCNDS----KGFYYCFSCHVKGDHLSFLSALLGCSF 85
                G++ A CP    +++        +    +G Y+C  C   GD + FL    G S+
Sbjct: 17  KKKTGGEWAAPCPACGGEDR---CMIKPADHEGRGGYWCRQCGAYGDAIQFLRDYEGMSY 73

Query: 86  IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA----------------TDFFH 129
           +E+ + L    G+           +    +      E A                  + H
Sbjct: 74  VEACRHL----GIEAARATASSLPRPPKPSAGQGTFEAAPSVPPAELWTQKATDFAAWAH 129

Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL 189
             L  +   +   +L  RG+   A++ ++LG+ P  +        +  +    +      
Sbjct: 130 QQLLAS--PKELAWLAARGLPLEAVQRYRLGWNPGEKGRSCLIRPRARWGLPPVEGKPDK 187

Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVI-AFGGRTLSKGESVKYLNSPETI--LFHKGK 246
                   ++              RG VI  F G       +   +  PE     F    
Sbjct: 188 SGKPTLKKTF-----------WIPRGLVIPHFAGTAPDSPVARLRIRRPEADRREFRAET 236

Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306
             Y   G+        R       +   ++VE  +D L L         +      +  +
Sbjct: 237 KYYVIPGSNMDAMILGR------DARAFVVVESELDALMLHHVAGDLAGAVSVMTASVRK 290

Query: 307 LR----LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
           +          +  I++  D +      A      +              +  G+DP   
Sbjct: 291 IEAGVLETLHDALAILVALDAEGKDGAGAKGCARWMASFPR----AKRWPVPVGKDPGEA 346

Query: 363 I 363
            
Sbjct: 347 F 347


>gi|190571837|ref|YP_001966529.1| putative primase-helicase [Lactobacillus delbrueckii subsp.
           bulgaricus]
 gi|312984530|ref|YP_004035052.1| Putative primase-helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|123967151|gb|ABM79765.1| putative primase-helicase [Lactobacillus delbrueckii subsp.
           bulgaricus]
 gi|123967160|gb|ABM79773.1| putative primase-helicase [Shuttle cloning vector pDOJ4]
 gi|312281357|gb|ADQ62075.1| Putative primase-helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 688

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/401 (13%), Positives = 106/401 (26%), Gaps = 59/401 (14%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK-GFYYCFSCH 68
           DL   I +   I   V  D +        +    P H +K PS   + +   + +CFSC 
Sbjct: 9   DLKSLISLPEYIASVVSMDSKG------FFSCVNPNHPDKHPSMCVDQNHPQYVHCFSCQ 62

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
              D                     A+    +         KEK   +   +     D +
Sbjct: 63  ASYDLFD----------------CWALINDGVTETRKNSAGKEKPVYNFNAVAIEIADHY 106

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
            ++L       L            A           +  ++R  L     S  +      
Sbjct: 107 GYTLIGDPANNLPEPPLPEPEPEPAQTQ------TSNDSNIRAQLEAWHASLNQTDYLQK 160

Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
                 +A  ++   + L   I    GQ   +  R +               +    +  
Sbjct: 161 RGITQTTAEIFNLGYSALTNSIIIPYGQDGYYVQRAI-------------NPIEKHDRYR 207

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT--EYQ 306
           +            +           + +VEG  D LS+ Q      V++  +        
Sbjct: 208 FPIGQVR------VYNAEALKECKTVFIVEGQFDALSIMQESGVGAVATSTSQTRLIVKT 261

Query: 307 LRLLWKL----SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS-RGEDPDS 361
           L+   +     +P I+L  D D  G +A      L       G       ++   +D + 
Sbjct: 262 LQKFKEQDPTINPTIILSMDNDRAGQKANRA---LQRDLEAHGFTCYVNPVNGDYKDANE 318

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
           F+    +  F + +   +   D    +   +          
Sbjct: 319 FL-VKDREGFRQKLQHVINQPDNWLDKYYADIKNRHDYPDN 358


>gi|294776399|ref|ZP_06741877.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|294449725|gb|EFG18247.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 296

 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 18/111 (16%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I+++   IP+++ + +  +    R         Y A  P+ +E+TPSF  N +K  +Y F
Sbjct: 6   IENMR-RIPLADFLARLGHEPVRRSGNEQW---YRA--PYRNERTPSFRVNVAKQLWYDF 59

Query: 66  SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVP---LPVVDPKIEK 109
                GD  +    F+       F+   + ++  A +P   LP  +PK  +
Sbjct: 60  GLGKGGDIFTLAGEFVR---SGDFMVQARFISEAAHMPLTALPAFEPKPPE 107


>gi|256026906|ref|ZP_05440740.1| hypothetical protein PrD11_02731 [Fusobacterium sp. D11]
          Length = 340

 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 10/93 (10%)

Query: 27  WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL-SALLGCSF 85
             ++  N  K  +    P H++K PS      K    CF+C    D    +       +F
Sbjct: 231 LQKKGIN-TKELFRCISPEHEDKNPSMSFYKKKNKCTCFACGKNYDIFDLVKMEYGLKTF 289

Query: 86  IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
            E +++        +       +  E     + 
Sbjct: 290 PEQLKK--------VEEFMKNPKLIEDANKTIY 314


>gi|317481330|ref|ZP_07940399.1| hypothetical protein HMPREF1007_03518 [Bacteroides sp. 4_1_36]
 gi|316902540|gb|EFV24425.1| hypothetical protein HMPREF1007_03518 [Bacteroides sp. 4_1_36]
          Length = 296

 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 12/108 (11%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I+++   IP+++ + +  +    R        + W   P+ +E+TPSF  N +K  +Y F
Sbjct: 6   IENMK-RIPLADFLARLGHEPVRRSGN-----ELWYRAPYRNERTPSFRVNVAKQLWYDF 59

Query: 66  SCHVKGDHLSFLSAL-LGCSFIESVQRLAAIAGVP---LPVVDPKIEK 109
                GD  +          F+   + ++  A +P   LP  +PK  +
Sbjct: 60  GLGKGGDIFTLAGEFVRSGDFMVQARFISEAAHIPLTALPAFEPKPPE 107


>gi|167752681|ref|ZP_02424808.1| hypothetical protein ALIPUT_00938 [Alistipes putredinis DSM
          17216]
 gi|167659750|gb|EDS03880.1| hypothetical protein ALIPUT_00938 [Alistipes putredinis DSM
          17216]
          Length = 50

 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 47 DEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESV 89
          +E+TPSF  +  K  ++ F     G  +  +  + GC+  E+V
Sbjct: 8  EERTPSFSVSYDKNLWHDFGTGEGGSIIDLVPRMEGCAEGEAV 50


>gi|313158906|gb|EFR58285.1| mobilizable transposon, excision family protein [Alistipes sp.
          HGB5]
          Length = 285

 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 13 IHIPISNLIGQYVDWDRRKTNAV--KGDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69
            I I +          R       +  Y     P  +E+TPSF  +  +  +Y F    
Sbjct: 8  NRISIRDF------LAWRGIQPKYERNGYGMYLSPLREERTPSFKVDYVQNLWYDFGLGE 61

Query: 70 KGDHLSFLSALLGCSFIESVQRL 92
           G  L+ +  L  C   E+V+RL
Sbjct: 62 GGTLLTLVMRLERCDSREAVRRL 84


>gi|291513570|emb|CBK62780.1| DNA primase (bacterial type) [Alistipes shahii WAL 8301]
          Length = 285

 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 13 IHIPISNLIGQYVDWDRRKTNAV--KGDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69
            I I +          R       +  Y     P  +E+TPSF  +  +  +Y F    
Sbjct: 8  NRISIRDF------LAWRGIQPKYERNGYGMYLSPLREERTPSFKVDYVQNLWYDFGLGE 61

Query: 70 KGDHLSFLSALLGCSFIESVQRL 92
           G  L+ +  L  C   E+V+RL
Sbjct: 62 GGTLLTLVMRLERCDSREAVRRL 84


>gi|322384411|ref|ZP_08058097.1| hypothetical protein PL1_0943 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150769|gb|EFX44229.1| hypothetical protein PL1_0943 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 319

 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/380 (14%), Positives = 101/380 (26%), Gaps = 83/380 (21%)

Query: 19  NLIGQYVDWDRRKTNAVKGDYWACCPF-HDEKTPSFHC-----NDSKGFYYCFSCH---- 68
           +++ +   +D R        + A  PF  D+ TPSF       +D  G ++ F       
Sbjct: 7   DVLYELEQFDWRNVRPAVDSFIASSPFRTDDDTPSFFVDLREDSDYYGCWHDFG-GTDPE 65

Query: 69  -VKGD---HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
              G+    LSFL      S+ E+ + L           D + E     +  L       
Sbjct: 66  WTSGNFTKLLSFLMD---VSYREADEYLRRKY-----ENDEQQETPVLRRVRL------- 110

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
                        +R    +   G+                                   
Sbjct: 111 -----------SAERPRKPVLHVGLLEEYRHDH----------------------PYLAS 137

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
                       T Y   +N +  P     GQ++    R+++  +               
Sbjct: 138 RCITAGVQREMQTGYCPSKNAVTIPWFGPNGQLLNIKYRSVTGKKFWYVKGGR-----PI 192

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            + +Y                + R+      +VE  +D L+L  AGV  V +  G    E
Sbjct: 193 KELVYGID------------YIYRHRCRRAAIVEAEIDALTLMSAGVPAVAAGGGVINKE 240

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
               ++      I +  D DD G     + I ++   L  G           +D +   +
Sbjct: 241 KAAVIIRSPIEEIFVMSDHDDVGQALKREVIRMLGGDLRVGVAGFPKRY---KDVNEVAQ 297

Query: 365 CYGKTAFEKLIVESLPLVDM 384
             G     +           
Sbjct: 298 AEGLQKLREYFERRKLCKKF 317


>gi|313608767|gb|EFR84583.1| DNA primase [Listeria monocytogenes FSL F2-208]
          Length = 113

 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 53/120 (44%), Gaps = 12/120 (10%)

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
           + ++  + L+++L   F E     P +    + +     L+  L+  +            
Sbjct: 1   FYHDNYKALYTYLIGYFAEGNDADPTKFMDSVPDATMKGLISSLEMVIS----------- 49

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                +  ++  +   KRF+ L ++K+E+E+++A  + + + E    ++  + +++ Q++
Sbjct: 50  PDEQGKPQFEDYIRSLKRFK-LEQKKKELEQELAAFSRENDKENEIRVMLEIVQLNRQLN 108


>gi|285018629|ref|YP_003376340.1| hypothetical protein XALc_1859 [Xanthomonas albilineans GPE PC73]
 gi|283473847|emb|CBA16349.1| conserved hypothetical protein [Xanthomonas albilineans]
          Length = 120

 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 13/101 (12%)

Query: 2   NYPRDFIKDLLIHI-PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC---ND 57
             P ++       +   ++   Q+V   +       G      PF DE+ PSF     N 
Sbjct: 27  RLPDNW----RDRLPDPADYYRQHVA--KLGRPNGSGWAQGVSPFRDEREPSFSVCQSNP 80

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
            +G +  F+    GD +SF   L G  F E+V  L  +AGV
Sbjct: 81  -RGPWRDFATGETGDLVSFHMRLTGKPFKEAVADL--LAGV 118


>gi|226325743|ref|ZP_03801261.1| hypothetical protein COPCOM_03556 [Coprococcus comes ATCC 27758]
 gi|225205867|gb|EEG88221.1| hypothetical protein COPCOM_03556 [Coprococcus comes ATCC 27758]
          Length = 304

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 73/221 (33%), Gaps = 10/221 (4%)

Query: 17  ISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF 76
           I +++ Q +   +R+ N         CPF  E     + N  K  + C  C   G  L  
Sbjct: 12  ILDVV-QVLHLRKRRGNYYD------CPFCGETHGKLNINVEKNVFRCNRCDASGGMLKL 64

Query: 77  LSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRLIEVATDFFHHSL-K 133
            + L   +  E+ Q++    G      D       +E+  T  +  IE     +   L  
Sbjct: 65  YADLHNVTLSEANQQIREALGKGEYRTDYIKATPVQEEKATAELAPIEEIHRTYQRMLSM 124

Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193
              +++    L  RG+    IE  +    P            +     K +         
Sbjct: 125 LTLNRKHQEDLQRRGLKPEQIEAQRYRSVPLFGMKKLVKRLAEEGYMVKGVPGFYRDTDG 184

Query: 194 NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           N   ++    + ++ PI S  G +  F  R     ++ KY+
Sbjct: 185 NWTINFKAENSGILIPIVSLDGFIQGFQIRVDHVTDTKKYI 225


>gi|295090304|emb|CBK76411.1| CHC2 zinc finger. [Clostridium cf. saccharolyticum K10]
          Length = 404

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/350 (12%), Positives = 91/350 (26%), Gaps = 31/350 (8%)

Query: 16  PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75
            I+++    +   +R+ N         CPF  +     + N +K  + C  C   G  L 
Sbjct: 10  DITDV-ANLLRLHKRRGNYYD------CPFCGDTKGRLNINPAKNVFRCNRCDKSGGMLQ 62

Query: 76  FLSALLGCSFIESVQRLAAIAG---VPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSL 132
             + L   ++ E+ + +                  E+KE+     +  ++     +   L
Sbjct: 63  LYADLHNLTYREANEEIREALNKGEYRQVRQAKVQEEKEEPVQSKLAPLDERHRTYTELL 122

Query: 133 -KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191
            +          L  RG+    I+  +    P           Q+     + +       
Sbjct: 123 DRLPLYSVHRENLRSRGLTIEQIKERRYRSVPMYGLHKIAETLQESGCVLEGVPGFYRDP 182

Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK--GESVKYLNSPETILFHKGKNLY 249
            +    ++    +  + P+ S  G++ A   R           + +S             
Sbjct: 183 EERWTLNFKTKNSGFLVPVESMDGKIQACQIRLDHPRDNNKYLWFSSAGYPHGVSS---- 238

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309
                      S    +    +  + L EG +             +   G  +      +
Sbjct: 239 ----------GSPVHVIGDLDAENVYLTEGGLKGSIAHYLSGHTFICLAGVNMYRSLRPV 288

Query: 310 LWKLSPR----IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           L +   R    +   FD D        K           G   N      
Sbjct: 289 LEEFQQRKMKFLFEAFDMDKKLKTDCDKHYHKCSVCSEKGTPENCPYKVE 338


>gi|167589039|ref|ZP_02381427.1| zinc finger CHC2-family protein [Burkholderia ubonensis Bu]
          Length = 930

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63
           I  L  HI + +L G+ +   R      +  Y    P H++++PS          G  + 
Sbjct: 4   IDQLKRHIDLHDLAGR-LGLKR-GRGGDRALYH--SPRHEDRSPSLSIYVNHPKHGTGWR 59

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
             S    G  +  +    G +  ++V+ L    G+P     P   +++ 
Sbjct: 60  DHSADAGGSCIDLVIHARGGTVADAVRYLHDAYGLPPERPAPAERREKS 108


>gi|309390326|gb|ADO78206.1| DnaB domain protein helicase domain protein [Halanaerobium
           praevalens DSM 2228]
          Length = 460

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 64/174 (36%), Gaps = 4/174 (2%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           ++ +   + + + +  E  LL  L+ +P  + E    L    + + + Q ++  L   + 
Sbjct: 2   ETEVENRENNDRYNKNEYQLLGILLQYPDKIDEVADLLEVKHFLDPQAQIIFDQLLKQYQ 61

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           +       ++   L  +   +  +Q+  ++          +  I  +++ YQ+  +L  R
Sbjct: 62  QDNQISRTKLLIDLQSQNAVDKAEQIIERLTSGFNTIDELKPTIDLIKKDYQR--SLLSR 119

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
                ++  E              E      +  +++   I+ +E  E ++E F
Sbjct: 120 ASAKLKELTEANDLTIDDYQARAQEIIFQATNESNDLEKHIYNME--EVLMESF 171


>gi|119383106|ref|YP_914162.1| hypothetical protein Pden_0352 [Paracoccus denitrificans PD1222]
 gi|119372873|gb|ABL68466.1| hypothetical protein Pden_0352 [Paracoccus denitrificans PD1222]
          Length = 380

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 9/130 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M      + +    +PI++++ +    +        G+    CP    +   F  N   G
Sbjct: 1   MTQDDHRLDEAKA-MPIADVVAR---LELSGLVRTGGELVGPCPQCGGRD-RFGVNLKDG 55

Query: 61  FYYCFS-CH--VKGDHLSFLSALLGCSFIESVQRLAAIA-GVPLPVVDPKIEKKEKIQTD 116
            + C   C    +GD ++ +  +LG  F  +++ L   A G+       +  K E  +  
Sbjct: 56  VFTCRKECGPHARGDQIALVQHVLGLDFRGALEWLCGPAQGLSDAERAERRRKAEANRRK 115

Query: 117 LIRLIEVATD 126
              +   A +
Sbjct: 116 QADIARRARE 125


>gi|167463684|ref|ZP_02328773.1| DNA primase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 316

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/380 (15%), Positives = 102/380 (26%), Gaps = 83/380 (21%)

Query: 19  NLIGQYVDWDRRKTNAVKGDYWACCPF-HDEKTPSFHC-----NDSKGFYYCFSCH---- 68
           +++ +   +D R        + A  PF  D+ TPSF       +D  G ++ F       
Sbjct: 4   DVLYELEQFDWRNVRPAVDSFIASSPFRTDDDTPSFFVDLREDSDYYGCWHDFG-GTDPE 62

Query: 69  -VKGD---HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
              G+    LSFL      S+ E+ + L           D + E     +  L       
Sbjct: 63  WTSGNFTKLLSFLMD---VSYREADEYLRRKY-----ENDEQQETPVLRRVRL------- 107

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
                        +R    +   G+                                   
Sbjct: 108 -----------SAERPRKPVLHVGLLEEYRHDH----------------------PYLAS 134

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
                       T Y   +N +  P     GQ++    R+++  +               
Sbjct: 135 RCITAGVQREMQTGYCPSKNAVTIPWFGPNGQLLNIKYRSVTGKKFWYVKGGR-----PI 189

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            + +Y                + R+      +VE  +D L+L  AGV  V +  G    E
Sbjct: 190 KELVYGID------------YIYRHRCRRAAIVEAEIDALTLMSAGVPAVAAGGGVINKE 237

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
               ++      I +  D DD G     + I ++   L  G         R +D +   +
Sbjct: 238 KAAVIIRSPIEEIFVMSDHDDVGQALKREVIRMLGGDLRVGVAG---FPKRYKDVNEVAQ 294

Query: 365 CYGKTAFEKLIVESLPLVDM 384
             G     +           
Sbjct: 295 AEGLQKLREYFERRKLCKKF 314


>gi|260593282|ref|ZP_05858740.1| putative mobilizable transposon, excision protein [Prevotella
          veroralis F0319]
 gi|260534839|gb|EEX17456.1| putative mobilizable transposon, excision protein [Prevotella
          veroralis F0319]
          Length = 326

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 4/95 (4%)

Query: 5  RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           + +  +     I   + +       +  A    Y  C P  +E  PSF  +  K  +  
Sbjct: 3  EEDLSRIK-RYSIVEYLERK-GVKPVRRTAAYALY--CSPLREETQPSFKVDTEKNLWID 58

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
          +     G  +     + GC+  E+++RL   A + 
Sbjct: 59 YGEGRGGSIIDLCMRMEGCTLSEAIRRLGQNASLD 93


>gi|75758760|ref|ZP_00738875.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|228904173|ref|ZP_04068268.1| DNA primase [Bacillus thuringiensis IBL 4222]
 gi|228931146|ref|ZP_04094082.1| DNA primase [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|74493770|gb|EAO56871.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|228828428|gb|EEM74128.1| DNA primase [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228855258|gb|EEM99822.1| DNA primase [Bacillus thuringiensis IBL 4222]
          Length = 190

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 11/80 (13%)

Query: 29  RRKTNAVKGDYWACCPFHDEKTPSFHCNDSK-----GFYYCFSCHVKGDHLSF------L 77
           + K  +   D    CPFHD+   S      K       ++CF C   GD + F      +
Sbjct: 34  KYKKTSFTKDKLCICPFHDDNDASLGLFRDKHDKEVKIFHCFGCGAGGDIVQFHRRLINI 93

Query: 78  SALLGCSFIESVQRLAAIAG 97
           +     S   + + +A + G
Sbjct: 94  TEHRNISLEVASKEVANLYG 113


>gi|288801499|ref|ZP_06406951.1| mobilizable transposon, excision protein [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288331580|gb|EFC70066.1| mobilizable transposon, excision protein [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 296

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 12/166 (7%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I ++   I I + +G  +     K     G Y    PF +E TPSF  + ++  +Y F+
Sbjct: 2   TIYEIKA-ISIKDYLGS-MSIYPIKNYGYYGMYK--SPFRNEHTPSFKVDYNQNLWYDFA 57

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL------ 120
               G  +  +  L  CS I++++       + LP +     K        I +      
Sbjct: 58  LDEGGSLIDLIMRLHNCSLIQAIELFNGKQNI-LPKLSIANSKTNSPSQSRIEVIGSTNL 116

Query: 121 -IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
             +   ++F H   N    + +       I   +            
Sbjct: 117 CHQNLIEYFTHRGINLNIAKRYCKEIHYRIGDRSFYAIGFPNNSYG 162


>gi|307564449|ref|ZP_07626990.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307346809|gb|EFN92105.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 324

 Score = 65.3 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 5  RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           + +  +    PI   + +       +       Y    P  +E  PSF  +  K  +  
Sbjct: 3  EEDLSRIK-RYPIVEYLERK-GIKPVRKTPTYAMYR--SPLREETHPSFKVDTEKNLWID 58

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
          +     G  +     + GC+  E+++ L   A
Sbjct: 59 YGEGRGGSIIDLCMRMEGCTLSEAIRHLGQNA 90


>gi|330858429|ref|YP_004414782.1| Gp32 [Propionibacterium phage PAD20]
 gi|260066547|gb|ACX30826.1| Gp32 [Propionibacterium phage PAD20]
          Length = 133

 Score = 65.3 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 32 TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
          +N  + +    CPFHD+  PS   N  KG +YC +C V G
Sbjct: 26 SNPSRNEQHILCPFHDDHQPSMSINLDKGVWYCHTCGVGG 65


>gi|218263917|ref|ZP_03477865.1| hypothetical protein PRABACTJOHN_03555 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222428|gb|EEC95078.1| hypothetical protein PRABACTJOHN_03555 [Parabacteroides johnsonii
           DSM 18315]
          Length = 294

 Score = 65.3 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 64/227 (28%), Gaps = 16/227 (7%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           MN            I I + +                 YW   P+ +E++ SF  ND   
Sbjct: 1   MNISEA------KRIRIVDFLQS---LGYAPVRVCNHQYWYLSPYREEQSASFKVNDWLN 51

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFI-ESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
            +Y F     G  +  +  L   S + E+++ + +   V LPV          I+  +  
Sbjct: 52  EWYDFGLSEGGGIIELVMQLYRLSTVHEALRTIESRLSVSLPVHTRMPRFDTDIEEAMKD 111

Query: 120 L------IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           +            + H    +    R +       +                      + 
Sbjct: 112 VRVLDLNHHALLSYLHSRSIDTDIARKYCKEIHYELRKRHYFSIAFENVSGGYEIRNPYY 171

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220
           +    +++      +  +       Y+ F + L F     +G  +A 
Sbjct: 172 KGCIRNKDISFIGHIAEERQKHVCVYEGFMDFLSFLTLQRKGDTVAC 218


>gi|239948287|ref|ZP_04700040.1| MobA/MobL family protein [Rickettsia endosymbiont of Ixodes
            scapularis]
 gi|239922563|gb|EER22587.1| MobA/MobL family protein [Rickettsia endosymbiont of Ixodes
            scapularis]
          Length = 1380

 Score = 65.3 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 104/317 (32%), Gaps = 25/317 (7%)

Query: 60   GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
            G ++ FS    GD  + +     CSFI++ + L  + G+        +   +   T L  
Sbjct: 921  GIWHDFSNDTGGDLFTLVQRENNCSFIQAKEYLQDMVGM--------VNNYQNKATWLKD 972

Query: 120  LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
            L   A +F+  +    + ++       +       +   + Y+P +  + +     +   
Sbjct: 973  L--AADEFYQKAKTRDQKEQYVEEAKIKYAQDLYDKSNSIKYSPPNNITRKYLSEHRSIE 1030

Query: 180  EEKIIEA--GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
                       L        +  +    LI   R + G++       L K  + K   + 
Sbjct: 1031 TILTKYQLRQDLRTNMMWDNTSKQHYPALIAFARDTEGKITGGQSIYLHKETAAKADIAV 1090

Query: 238  ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
                F K       F A+              +++  I+ EG    LSL +AG++  +  
Sbjct: 1091 NKRSFGKIT---GSFVAVQ--------QSNEQNNNITIIAEGVETALSLQEAGLKGNILC 1139

Query: 298  LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
                      +   K + RI++  D D     +     +        G  V+ ++     
Sbjct: 1140 SLGVSNIKNYQP--KANERIIIAADNDGQEAPSLKAVNNAKKTLEQQGAIVSMIMPKEHG 1197

Query: 358  DPDSFIRCYGKTAFEKL 374
            D +  ++  GK A  +L
Sbjct: 1198 DFNDVLKTQGKEAVREL 1214


>gi|256842498|ref|ZP_05548000.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298374917|ref|ZP_06984874.1| mobilizable transposon excision protein [Bacteroides sp. 3_1_19]
 gi|301307991|ref|ZP_07213945.1| putative mobilizable transposon, excision protein [Bacteroides
          sp. 20_3]
 gi|256735854|gb|EEU49186.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267417|gb|EFI09073.1| mobilizable transposon excision protein [Bacteroides sp. 3_1_19]
 gi|300833461|gb|EFK64077.1| putative mobilizable transposon, excision protein [Bacteroides
          sp. 20_3]
          Length = 288

 Score = 65.3 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I+++   IPI+  + +  Y    RR       +YW   P+ +E+T SF  N  K  ++ 
Sbjct: 2  TIEEIKA-IPIAAFLARMGYEPARRRG-----DEYWYLAPYREERTASFQVNVRKEIWHD 55

Query: 65 FSCHVKGDHLS 75
          F     GD  +
Sbjct: 56 FGTGQGGDIFN 66


>gi|298373363|ref|ZP_06983352.1| mobilizable transposon [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274415|gb|EFI15967.1| mobilizable transposon [Bacteroidetes oral taxon 274 str. F0058]
          Length = 324

 Score = 64.9 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 1  MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
          M    + +  +    PI   + +       +       Y  C P  +E  PSF  +  K 
Sbjct: 1  MK--EEDLSRIK-RYPIVEYLERK-GVKPVRRIPSYALY--CSPLREETHPSFKVDTQKN 54

Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
           +  ++    G  +     L GC+  E+++RL   A
Sbjct: 55 LWIDYAEGRGGSIIDLCMRLEGCTLSEAIRRLGQNA 90


>gi|317485316|ref|ZP_07944196.1| hypothetical protein HMPREF0179_01549 [Bilophila wadsworthia 3_1_6]
 gi|316923442|gb|EFV44648.1| hypothetical protein HMPREF0179_01549 [Bilophila wadsworthia 3_1_6]
          Length = 516

 Score = 64.9 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/367 (13%), Positives = 98/367 (26%), Gaps = 63/367 (17%)

Query: 33  NAVKGDYWACCPFHDE---KTPSFHCNDSK--------------GFYYCFSCHVKGDHLS 75
            A    +   CP       K+  F     +              G  YC  C   GD + 
Sbjct: 17  KAQGNGFNGPCPLCGGEPGKSDRFIIWPDREHDLGHTCAVNHIPGVCYCRQCRFTGDSIK 76

Query: 76  FLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135
           +L  + G SF E+   L    G+           + + +         +  F        
Sbjct: 77  YLMEIEGLSFREACAEL----GI------SNAPVRLRHRPAPREPRAESCTF-------- 118

Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195
              +      E+ +        +      +     + L  +G +EE +    L      +
Sbjct: 119 -TPQAWELPTEKWVAYATKLQAEAEQEIWNHPEALKWLAARGITEEAVRTYRLGYLVGEN 177

Query: 196 ATSYDR-FRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGA 254
             +     R+ L    +   G+ +               L + +  L +      N   A
Sbjct: 178 GKAGRYRSRSALGLAPKEQDGKAMTM---LFIPRGITIPLFAEDGRLINLRIRKPNADLA 234

Query: 255 LNYLQK---------------SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
               +K                +R +  R   S  ++VEG +D +    A    + +   
Sbjct: 235 KEEGRKCLKYIELEGSCRRPLLLRPEAERARLSVYVIVEGELDAVLCHYATGGGIGALAV 294

Query: 300 TALTEYQL---RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            + T         L + + R+++  D +D     A     +                  G
Sbjct: 295 RSNTRKPDAEAHSLLEGAVRLLVALDYEDSLNGVAGLKWWMDTYPHA-----RRWPTPEG 349

Query: 357 EDPDSFI 363
           +DP    
Sbjct: 350 KDPGEAY 356


>gi|32455757|ref|NP_862216.1| primase-helicase [Lactobacillus delbrueckii subsp. lactis]
 gi|6469511|gb|AAF13312.1|AF109691_5 primase-helicase [Lactobacillus delbrueckii subsp. lactis]
          Length = 572

 Score = 64.9 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/404 (12%), Positives = 104/404 (25%), Gaps = 67/404 (16%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK-GFYYCFS-- 66
           DL   + +   I   V  D +        +    P H +K PS   + +   + +CFS  
Sbjct: 10  DLKSLVSLPEYIASVVSMDSKG------FFSCLNPNHPDKHPSMCVDRNHPQYVHCFSAT 63

Query: 67  CHVKGDHLS-FLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
           C    D    +                 A+    +         KEK   +   +     
Sbjct: 64  CQASYDLFDCW-----------------ALINDGVTETRKNSTGKEKPVYNFNAVASEIA 106

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
           D + ++L       L            A          ++ ++             +   
Sbjct: 107 DHYGYTLIGDPANNLPEPPLPEPEPEPAQTSTNFRDQLEAWHANL----------NQTDY 156

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
                    +A  ++   + L   I    GQ   +  R L               +    
Sbjct: 157 LQKRGITQTTAEIFNLGYSPLTNSIIIPYGQDGYYVQRAL-------------NPIEKHD 203

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS------LG 299
           +  +            +           + +VEG  D LS+ Q      V++      L 
Sbjct: 204 RYRFPIGQVR------VYNAEALKECKTVFIVEGQFDALSIMQESGVGAVATSASQTQLI 257

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS-RGED 358
               +        ++P I+L  D D  G +A      L       G       ++   +D
Sbjct: 258 VKTLQKFKEQDPTINPTIILSMDNDRAGQKANRA---LQRDLEAHGFTCYVNPVNGDYKD 314

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
            + F+    +  F + +   +   D    +   +          
Sbjct: 315 ANEFL-VKDREGFRQKLQHVINQPDNWLDKYYADIKQRHDYPDN 357


>gi|285018574|ref|YP_003376285.1| hypothetical protein XALc_1801 [Xanthomonas albilineans GPE PC73]
 gi|283473792|emb|CBA16295.1| conserved hypothetical protein [Xanthomonas albilineans]
          Length = 128

 Score = 64.9 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 12  LIHI-PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC---NDSKGFYYCFSC 67
              +   ++   Q+V   +   +   G      PF DE+ PSF     N  +G +  F+ 
Sbjct: 41  RDRLPDPADYYRQHVA--KLGRSNGSGWAQGVSPFRDEREPSFSVCQSNP-RGPWRDFAT 97

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
              GD +SF   L G  F E+V  L  +AGV
Sbjct: 98  GETGDLVSFHMRLTGKPFKEAVADL--LAGV 126


>gi|255015053|ref|ZP_05287179.1| putative DNA primase involved in conjugation TraP [Bacteroides
          sp. 2_1_7]
          Length = 288

 Score = 64.9 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I+++   IPI+  + +  Y    RR       +YW   P+ +E+T SF  N  K  ++ 
Sbjct: 2  TIEEIKA-IPIAAFLARMGYEPARRRG-----DEYWYLAPYREERTASFQVNVRKEIWHD 55

Query: 65 FSCHVKGDHLS 75
          F     GD  +
Sbjct: 56 FGTGQGGDIFN 66


>gi|285018408|ref|YP_003376119.1| hypothetical protein XALc_1630 [Xanthomonas albilineans GPE PC73]
 gi|283473626|emb|CBA16129.1| conserved hypothetical protein [Xanthomonas albilineans]
          Length = 128

 Score = 64.5 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 12  LIHI-PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC---NDSKGFYYCFSC 67
              +   ++   Q+V   +       G      PF DE+ PSF     N  +G +  F+ 
Sbjct: 41  RDRLPDPADYYRQHVA--KLGRPNGSGWAQGVSPFRDEREPSFSVCQTNP-RGPWRDFAT 97

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
              GD +SF   L G  F E+V  L  +AGV
Sbjct: 98  GETGDLVSFHMRLTGKPFKEAVADL--LAGV 126


>gi|167945314|ref|ZP_02532388.1| hypothetical protein Epers_01835 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 131

 Score = 64.5 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC- 67
           ++L   I + +L  + +  +R      +G+Y    P H +K+PS         +   SC 
Sbjct: 5   EELKQRIDLYDLAAK-LGLER---PQSRGNYK--SPRHPDKSPSLSIFADGTRWKDHSCD 58

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK 109
              G  +  +  +      E+++RL  I G+PL   D    +
Sbjct: 59  DAAGTCIDLVMYVEESPVDEAIRRLHEIYGIPLDRPDAPRRE 100


>gi|59897254|gb|AAX12049.1| DNA primase [Enterobacteria phage T5]
          Length = 296

 Score = 64.5 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 98/332 (29%), Gaps = 87/332 (26%)

Query: 41  ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL 100
              P HD+K PS   +   G  +C SC              G           +I     
Sbjct: 26  CLNPDHDDKHPSLRIDPETGIMHCLSCGFG----------KGIP---------SIYHYFN 66

Query: 101 PVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLG 160
                +  +  +++  +  +   +T     +L         +  D RGI S  ++ +   
Sbjct: 67  ETQYRQSPRLSQVRKKISEIRNGST-----NLAIPESA-YLFEGDFRGISSKTLKKYFAF 120

Query: 161 YAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220
                                                       R++FPI  + G+ I F
Sbjct: 121 QHQADWE------------------------------------GRIVFPITDAVGRNILF 144

Query: 221 GGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGY 280
            GR+++     KYL  P+ +        YN                    +  +ILVEG 
Sbjct: 145 LGRSINSSAPPKYLVKPKQVSPPIFPVRYN--------------------TPVLILVEGI 184

Query: 281 MDVLSLCQAGVQNVVSSLGTA------LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA 334
            D+L+L   G+       GT       + +     +      +V+  D D  G +AA   
Sbjct: 185 FDMLNLEDNGIDYASCCFGTHQFTSDNIADKFSPYIIAGVKVVVILLDNDASGNKAAQAL 244

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
             L+         V   LL  G+DP    +  
Sbjct: 245 AQLIRTKTRLTPVVANFLLPEGKDPGDLNKEE 276


>gi|220933146|ref|YP_002510054.1| DnaB domain protein helicase domain protein [Halothermothrix orenii
           H 168]
 gi|219994456|gb|ACL71059.1| DnaB domain protein helicase domain protein [Halothermothrix orenii
           H 168]
          Length = 460

 Score = 64.5 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 63/171 (36%), Gaps = 13/171 (7%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +       +E  LL  L+ +P  + E    L    + + + Q ++  L + F        
Sbjct: 9   QQFNNVQEQEFQLLGILLQYPQKIDEIADSLEVKHFQDPQAQLIYEILLNQFQRDNQISR 68

Query: 535 EEIHQRLCERGF----GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            ++  RL + G      E +++L      +G  +       +D+ +   Q   L K  R 
Sbjct: 69  TKLFLRLKQDGVIKKPEETIERL-----TSGFSTVDELKPTIDLIKQNYQRRLLVKAARK 123

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           + ++    +  I    A+   E      +   ++   I  +E  EA+++ F
Sbjct: 124 I-QELAAKDLDIDDFQARA-QELIFEATNETTDLEKHIFTME--EALMKSF 170


>gi|298385236|ref|ZP_06994795.1| mobilizable transposon, excision protein [Bacteroides sp. 1_1_14]
 gi|298262380|gb|EFI05245.1| mobilizable transposon, excision protein [Bacteroides sp. 1_1_14]
          Length = 301

 Score = 64.5 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 5/181 (2%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA-LLGCSFIESVQRLAAIAGV 98
           W   P+ +E TPSF  N  K  ++ F     G+  +     +    F+   + +A +A +
Sbjct: 35  WYRSPYREEHTPSFKVNPEKNLWFDFGEGKGGNIFALAGEFIQSGDFLTQARYVAEVADM 94

Query: 99  PL----PVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAI 154
           PL        P++ +      + + ++ + +    H L+           + + +     
Sbjct: 95  PLQDYEQRRTPEVRQPAGHSFEDVEVLPLQSRALLHYLQERGIPSAIAIANCKEMRYSTH 154

Query: 155 EMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR 214
                  A  +     E             +  LL  G      Y+ F + L        
Sbjct: 155 GKRYFAVAFGNCGGGYEIRNPFFKGCVPPKDVTLLPSGSAVCNVYEGFVDYLSARALGIG 214

Query: 215 G 215
           G
Sbjct: 215 G 215


>gi|169825429|ref|YP_001695604.1| DNA primase [Lysinibacillus sphaericus C3-41]
 gi|168994706|gb|ACA42245.1| DNA primase (bacterial type) [Lysinibacillus sphaericus C3-41]
          Length = 459

 Score = 64.5 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 46/210 (21%)

Query: 2   NYPRDFIKDLLIHIPISN---LIGQYVDWDRRKTNAVKGDYWACCP--FHDEKTPSFHCN 56
              ++ I  +L  +PI +   ++G      R+        Y   CP   H EK      +
Sbjct: 3   RISQETIDAVLS-VPIIDLANVMGD--KLIRKGKQ-----YTIPCPDPNHTEK-----VS 49

Query: 57  ------DSKGFYYCFSCHVKGD------HLSFLSALL-GCSFIESVQRLAAIAGVPLPVV 103
                  +K  + CFSC V G+       +           F+ SV+ +A + G+ +   
Sbjct: 50  DNAYIEPNKNVFKCFSCMVGGNSAVAYYAIKTYGTYDSKKHFLPSVRAVAELMGIQIKNE 109

Query: 104 D-----PKIEKKEKIQTDLIR-------LIEVATDFFHHSLKNARDKRLHYYLDERGIDS 151
           D     P   + ++     +        +++V    F  +L   R   L+ ++++R    
Sbjct: 110 DGTISLPGATEPQRRFVKAVELEPKEPKILDVVYRAF-LNLCPIRQNHLNEWINKRRYSK 168

Query: 152 HAIEMFKLGYAP--DSRYSLREHLRQKGFS 179
           + I+   L   P  D   S+ + L   G+ 
Sbjct: 169 NEIQTMMLKSVPTSDEWKSIYQTLHDLGYP 198


>gi|222529017|ref|YP_002572899.1| hypothetical protein Athe_1025 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455864|gb|ACM60126.1| protein of unknown function DUF927 [Caldicellulosiruptor bescii DSM
           6725]
          Length = 842

 Score = 64.5 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 23/191 (12%)

Query: 22  GQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC-FSCHVKGDHLSFLSA 79
            +Y+ +  +  T+ +     A CPFHD++  SF      G + C   C   G+ ++FL  
Sbjct: 21  SRYLSNMKKTGTDKIS----AQCPFHDDQHNSFWFRIQNGCWKCEAGCG-NGNAITFLER 75

Query: 80  LLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKR 139
           +   S  E+ + L   AG+         EKKEK       L++   D +    K   +  
Sbjct: 76  IEKISRKEAYKILLKEAGL-----LKDDEKKEK-------LMKYTLDDYSKEKKLPIEFL 123

Query: 140 LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSY 199
                 ++           +             +R++ +   K   A +          +
Sbjct: 124 TKICEMKQ----EDYNKRYVSIYYKDDQGNTAGIRKRYYPSSKKRFAWVQGARVVPYGLW 179

Query: 200 DRFRNRLIFPI 210
                   + I
Sbjct: 180 RLSEFNKDYII 190


>gi|237725733|ref|ZP_04556214.1| TraP [Bacteroides sp. D4]
 gi|229435541|gb|EEO45618.1| TraP [Bacteroides dorei 5_1_36/D4]
          Length = 297

 Score = 64.5 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 5/181 (2%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA-LLGCSFIESVQRLAAIAGV 98
           W   P+ +E TPSF  N  K  ++ F     G+  +     +    F+   + +A +A +
Sbjct: 31  WYRSPYREEHTPSFKVNPEKNLWFDFGEGKGGNIFALAGEFIQSGDFLTQARYVAEVADM 90

Query: 99  PL----PVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAI 154
           PL        P++ +      + + ++ + +    H L+           + + +     
Sbjct: 91  PLQDYEQRRTPEVRQPAGHSFEDVEVLPLQSRALLHYLQERGIPSAIAIANCKEMRYSTH 150

Query: 155 EMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR 214
                  A  +     E             +  LL  G      Y+ F + L        
Sbjct: 151 GKRYFAVAFGNCGGGYEIRNPFFKGCVPPKDVTLLPSGSAVCNVYEGFVDYLSARALGIG 210

Query: 215 G 215
           G
Sbjct: 211 G 211


>gi|91205236|ref|YP_537591.1| conjugal transfer protein TraA [Rickettsia bellii RML369-C]
 gi|157827425|ref|YP_001496489.1| conjugal transfer protein TraA [Rickettsia bellii OSU 85-389]
 gi|91068780|gb|ABE04502.1| Conjugal transfer protein TraA [Rickettsia bellii RML369-C]
 gi|157802729|gb|ABV79452.1| Conjugal transfer protein TraA [Rickettsia bellii OSU 85-389]
          Length = 1383

 Score = 64.5 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 101/331 (30%), Gaps = 21/331 (6%)

Query: 53   FHCNDSK-GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111
               N SK G +Y FS    GD  + +     C F+E+ + L  + G+       + + KE
Sbjct: 886  MKINGSKAGRWYDFSKGEGGDLFTLVQREKNCDFVEAKKYLQDMVGISNNSKLLEDKIKE 945

Query: 112  KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171
            +    +    +     +    K  R + L+   D     +      K          +  
Sbjct: 946  QFDQKVK--NQDQQAKYAEISKIKRAEELYEKSDSIIYTTPNNIAKKYLLEHRGIKKILT 1003

Query: 172  HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
              +        ++          +  ++ R ++          G +       L+K  + 
Sbjct: 1004 GYQLNNDLRTNMMWDSNSKQYYPALIAFARNKD----------GNITGGQSIYLNKETNN 1053

Query: 232  KYLNSPETILFHKGKNLY------NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
            K         F + +  +      N    +        KD   + S+  I+ EG    LS
Sbjct: 1054 KADIEVNKRSFGRIRGSFVEINKTNEQQNVQSRNVQSSKDGNNSVSNITIIAEGVETALS 1113

Query: 286  LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
            + +AG++  +              +     RI++  D D     +    I      +  G
Sbjct: 1114 IREAGIKGKILCSLGVSNIRNYEPIKG--ERIIIAADNDGKDAVSVNTVIKAQEELIRQG 1171

Query: 346  NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376
              V  +      D +  ++  G  +  KLI 
Sbjct: 1172 ATVAIIRPPEKGDFNDMLKSQGAESINKLIE 1202


>gi|282851793|ref|ZP_06261156.1| conserved domain protein [Lactobacillus gasseri 224-1]
 gi|282557035|gb|EFB62634.1| conserved domain protein [Lactobacillus gasseri 224-1]
          Length = 211

 Score = 64.1 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/224 (8%), Positives = 54/224 (24%), Gaps = 22/224 (9%)

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS------- 463
            I  + D      Y   +  +     +          R  ++   H+     S       
Sbjct: 1   MIAGLNDPVAADLYLDKLARQTGVTRESLKVTFVRERRKLQRARNHQQAYQASTLMENIG 60

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           +         G  S+  +     LL   I+                + +    KL  F  
Sbjct: 61  ETAEPKEAQAGTDSETRNPALDRLLYLFIHSDEARDYLLSR--QFLFPDERYAKLAEFWL 118

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                      +     + E        +L   + +  + +   + +  ++    +    
Sbjct: 119 KYHQTHDEAEVKGFIDFIPE--------ELQGIIINMEMITMPPDYSKRELDDQLRALEK 170

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                  +  Q  ++  Q+ +   K +      +   +  +  +
Sbjct: 171 SK-----IDEQLNDLLNQLKEAQRKQDNSLELEIAQKVIALRRK 209


>gi|303247555|ref|ZP_07333826.1| zinc finger CHC2-family protein [Desulfovibrio fructosovorans JJ]
 gi|302491035|gb|EFL50929.1| zinc finger CHC2-family protein [Desulfovibrio fructosovorans JJ]
          Length = 511

 Score = 64.1 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 97/319 (30%), Gaps = 49/319 (15%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRL----AAIAG---------VPLPVVDPKI 107
            Y+C  C   GD + FL       + E+   L    AA +G         V         
Sbjct: 51  RYFCRGCGRSGDAIQFLRDFQNLGYGEACHELGLTPAAPSGARTPVCQPVVEPTAPAWTP 110

Query: 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167
           +  E+         +    +  H L+N+ D  L +   ERG+ +     F +G+ P+  Y
Sbjct: 111 KTSERPNAKWQAQAQKLIRWAEHQLQNSPD-VLAWLAAERGLKATTAARFHVGWLPEDLY 169

Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
             R                       N         + L+ P+    G+      R    
Sbjct: 170 RDRTAWGLPQE------------FKPNGKRRMLWLPHGLVLPVLDDAGRPARIKFRRP-- 215

Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
                      +   ++ K LY     L    K+    V   +++  I+VE  +D L L 
Sbjct: 216 -----------SPRENEPKYLY-----LPSEPKNTAPLVITGTAAAWIVVESELDGLLLA 259

Query: 288 QA--GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           Q    + NV++    +L           S   +L          A  KA         P 
Sbjct: 260 QEAGDMVNVLALGSASLRPDAEAHARLESAPFILVA---LDADDAGDKAAWTWWATHYPP 316

Query: 346 NRVNFVLLSRGEDPDSFIR 364
            ++    +  G+DP    R
Sbjct: 317 EKIRVWPVPEGKDPTDAWR 335


>gi|166032166|ref|ZP_02234995.1| hypothetical protein DORFOR_01869 [Dorea formicigenerans ATCC
           27755]
 gi|166027889|gb|EDR46646.1| hypothetical protein DORFOR_01869 [Dorea formicigenerans ATCC
           27755]
          Length = 406

 Score = 64.1 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 73/221 (33%), Gaps = 10/221 (4%)

Query: 17  ISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF 76
           I +++ Q +   +R+ N         CPF  E     + N  K  + C  C   G  L  
Sbjct: 12  ILDVV-QVLHLRKRRGNYYD------CPFCGETHGKLNINVEKNVFRCNRCDASGGMLKL 64

Query: 77  LSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRLIEVATDFFHHSL-K 133
            + L   +  E+ Q++    G      D       +E+  T  +  IE     +   L  
Sbjct: 65  YADLHNVTLSEANQQIREALGKGEYRTDYIKATPVQEEKATAELAPIEEIHRTYQRMLSM 124

Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193
              +++    L  RG+    IE  +    P            +     K +         
Sbjct: 125 LTLNRKHQEDLQRRGLKPEQIEAQRYRSVPLFGMKKLVKRLAEEGYMVKGVPGFYRDTDG 184

Query: 194 NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
           N   ++    + ++ PI S  G +  F  R     ++ KY+
Sbjct: 185 NWTINFKAENSGILIPIVSLDGFIQGFQIRVDHVTDTKKYI 225


>gi|73541885|ref|YP_296405.1| hypothetical protein Reut_A2198 [Ralstonia eutropha JMP134]
 gi|72119298|gb|AAZ61561.1| conserved hypothetical protein [Ralstonia eutropha JMP134]
          Length = 934

 Score = 64.1 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/390 (13%), Positives = 107/390 (27%), Gaps = 65/390 (16%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           R +   L   I + +L    +D  R              P H +  PS    D+   +  
Sbjct: 10  RSWFDQLKRDIDLHDL-AVRLDLRRSGAKGNYH-----SPHHADSNPSLSIFDNGRAWKD 63

Query: 65  FSCHVKGDHLSFLSAL--LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122
           +S    G  +  +          +++ + L    G+P+P  +P+    +K         E
Sbjct: 64  WSTETGGSCIDLVRHCLPEVAGPLDAAKLLGDWYGMPMPDREPRSLPTKKSTE------E 117

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
              +      +   D                +    +        +     +        
Sbjct: 118 YIAE------RVRVDPAPAVAYLASRGIDETVTRRAIKAGTVGWNT-WHSQKVPAGEGGH 170

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
              A   I  +                  +  G+V+A   R          LN       
Sbjct: 171 GGAAAAFIVRE------------------AGTGRVVAVDLRYADPA-----LNGNVKTQC 207

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA- 301
           H  K  Y +              +R   +  + +VE  ++ LS+    + +  ++     
Sbjct: 208 HGEKLEYGW----------TADAMRLRRAHTVYIVESPINALSVESCNLPDGCAAFAIRG 257

Query: 302 -LTEYQLRLLWKLSPRIVLCFD---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
                ++   +    R+++  D         G   GL AA+   + +    I    V+  
Sbjct: 258 IANADKIDWAFLHGKRVLIALDHTDAVNERTGQRAGLAAAWTLSEALTAADIGSMFVDMQ 317

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
               GED +  ++ +G     K +      
Sbjct: 318 DWEEGEDINDVLQQHGADELTKRLKRLESW 347


>gi|326633005|ref|YP_004306594.1| putative DNA replication primase [Enterobacteria phage SPC35]
 gi|321272199|gb|ADW80091.1| putative DNA replication primase [Enterobacteria phage SPC35]
          Length = 296

 Score = 64.1 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 98/332 (29%), Gaps = 87/332 (26%)

Query: 41  ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL 100
              P HD+K PS   +   G  +C SC              G           +I     
Sbjct: 26  CLNPDHDDKHPSLRIDPETGIMHCLSCGFG----------KGIP---------SIYHYFN 66

Query: 101 PVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLG 160
                +  +  +++  +  +   +T     +L         +  D RGI S  ++ +   
Sbjct: 67  ETQYRQSPRLSQVRKKISEIRNGST-----NLAIPESA-YLFEGDFRGISSKTLKKYFAF 120

Query: 161 YAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220
                                                       R++FPI  + G+ I F
Sbjct: 121 QHQADWE------------------------------------GRIVFPITDAVGRNILF 144

Query: 221 GGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGY 280
            GR+++     KYL  P+ +        YN                    +  +ILVEG 
Sbjct: 145 LGRSINSSAPPKYLVKPKQVSPPIFPVRYN--------------------TPVLILVEGI 184

Query: 281 MDVLSLCQAGVQNVVSSLGTA------LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA 334
            D+L+L   G+       GT       + +     +      +V+  D D  G +AA   
Sbjct: 185 FDMLNLEDNGIDYASCCFGTHQFTSDNIADKFSPYIIAGVKVVVILLDNDASGNKAAQAL 244

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
             L+         V   LL  G+DP    +  
Sbjct: 245 AKLIRTKTRLTPVVANFLLPEGKDPGDLNKDE 276


>gi|157803711|ref|YP_001492260.1| conjugal transfer protein TraA [Rickettsia canadensis str. McKiel]
 gi|157784974|gb|ABV73475.1| Conjugal transfer protein TraA [Rickettsia canadensis str. McKiel]
          Length = 288

 Score = 64.1 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 97/298 (32%), Gaps = 22/298 (7%)

Query: 53  FHCNDSK-GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111
              N +K G ++ FS    GD  + +     C F+E+ + L  + G+             
Sbjct: 1   MKINGNKAGIWHDFSTGNGGDLFTLVQRETNCDFVEAKKYLQDMVGIS-----------S 49

Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDER---GIDSHAIEMFKLGYAPDSRYS 168
             ++  I +   A    +  +K    +       +R     +      + +      RY 
Sbjct: 50  TNKSKDIAVNLAANK--NQQIKTPAAQGDKIVKIKRAEILYEKSDALKYVMPSHVAKRYL 107

Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
                 ++  +  ++  +  L       +   ++   LI   R+  G + A     L+K 
Sbjct: 108 SEHCEIKEVLTRYQL--SFDLSTNMMWDSHSKQYYPVLIAFARNKDGNITAGQSIYLNKD 165

Query: 229 ESVKYLNSPETILFHKGKNLYN-FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
            + K         F + +  +             I KD   ++++  I+ EG    LS+ 
Sbjct: 166 TNNKADIDVNKRSFGRIRGSFVEINKNNEQQNVQISKDGSNSTNNVTIIAEGLETALSIV 225

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           +AG++  +            + L     RI++  D D     + Y  I      +  G
Sbjct: 226 EAGIKGKILCSLGVSNIRNYKPLKG--ERIIIAADNDAKEAVSVYTIIKAQDELISKG 281


>gi|301058240|ref|ZP_07199286.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300447657|gb|EFK11376.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 340

 Score = 64.1 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 62/315 (19%), Positives = 102/315 (32%), Gaps = 46/315 (14%)

Query: 31  KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84
           K +    + W   PF H+EK  S H + S+  +  FS    G  + F     L      +
Sbjct: 32  KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 90

Query: 85  FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144
             E  + +    G+      PK   K+K +                 L+    +      
Sbjct: 91  MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR--- 145

Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204
             RGI +        G+ P                      + L                
Sbjct: 146 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 189

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            L   I +  G+ ++       +  + KY + P    F K   +YN    L         
Sbjct: 190 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 236

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319
            + + +   +IL EG+ DV  L +AG +N V+ +G A++  Q+  L         PRI+L
Sbjct: 237 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 296

Query: 320 CFDGDDPGLRAAYKA 334
             D D  G   A + 
Sbjct: 297 FLDRDPAGKTGALQY 311


>gi|46401857|ref|YP_006949.1| putative DNA replication primase [Enterobacteria phage T5]
 gi|45775035|gb|AAS77167.1| putative DNA replication primase [Enterobacteria phage T5]
          Length = 296

 Score = 64.1 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 98/332 (29%), Gaps = 87/332 (26%)

Query: 41  ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL 100
              P HD+K PS   +   G  +C SC              G           +I     
Sbjct: 26  CLNPDHDDKHPSLRIDPETGIMHCLSCGFG----------KGIP---------SIYHYFN 66

Query: 101 PVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLG 160
                +  +  +++  +  +   +T     +L         +  D RGI S  ++ +   
Sbjct: 67  ETQYRQSPRLSQVRKKISEIRNGST-----NLAIPESA-YLFEGDFRGISSKTLKKYFAF 120

Query: 161 YAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220
                                                       R++FPI  + G+ I F
Sbjct: 121 QHQADWE------------------------------------GRIVFPITDAVGRNILF 144

Query: 221 GGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGY 280
            GR+++     KYL  P+ +        YN                    +  +ILVEG 
Sbjct: 145 LGRSINSSAPPKYLVKPKQVSPPIFPVRYN--------------------TPVLILVEGI 184

Query: 281 MDVLSLCQAGVQNVVSSLGTA------LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA 334
            D+L+L   G+       GT       + +     +      +V+  D D  G +AA   
Sbjct: 185 FDMLNLEDNGIDYASCCFGTHQFTSDNIADKFSPYIIAGVKVVVILLDNDASGNKAAQAL 244

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
             L+         V   LL  G+DP    +  
Sbjct: 245 AKLIRTKTRLTPVVANFLLPEGKDPGDLNKEE 276


>gi|297618091|ref|YP_003703250.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
 gi|297145928|gb|ADI02685.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
          Length = 692

 Score = 63.8 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 66/501 (13%), Positives = 134/501 (26%), Gaps = 76/501 (15%)

Query: 46  HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP 105
           H +K PS   N   G Y+C  C        FL+ +LG    E+   L       L   D 
Sbjct: 64  HGDKKPSAAVNVKSGVYHCSVCG-SFSPFRFLTEILGLPKDEASFTL-DQYRFELRFEDK 121

Query: 106 KIEKKEKIQTDLIRL-----IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLG 160
              +K    +    +      E A++     + +   + +  YL  RGI+   +  ++ G
Sbjct: 122 PAFEKVDNYSSAFVIPPKGFNEYASE--AAKMLSPDLEIVQEYLAARGINYELLTRYRWG 179

Query: 161 YAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220
           Y P+                                  +   +   I       GQV+  
Sbjct: 180 YVPEG---------------------------------FVPGQEECIVVPFIVNGQVVGI 206

Query: 221 GGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGY 280
            GR     +                             +  +            ++VEG 
Sbjct: 207 RGRARDGRKGGA-----------------------KGSRFVLWNLGALEGHDQAVIVEGE 243

Query: 281 MDVL----SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPG-LRAAYKAI 335
            D L    +L   G+   V S+  A    +    ++    + L    DDP        A+
Sbjct: 244 SDALRTIQALESCGIDVPVLSVPGATFRREWEREFQGIHTVYLIPQADDPSWNNFVANAV 303

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI-VESLPLVDMLWKRETENRS 394
            ++  +     ++ +     G+D   ++R +      +LI            +   E   
Sbjct: 304 KVLGDYRCVVVKLPWKRGEAGKDVCDWLRLHSDAELAELIPWRKTRSFFTTHEEMLELAE 363

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
              P     L       +     + ++ ++   +                   R  K   
Sbjct: 364 QEIPWLINGLIARGDKVLVGGPQKAMKTFFILNLIRAAASGEDFLEYPGWSVHRPCKVLC 423

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD---IRYD 511
              +    +       L+               +   +++P  + +  +   D       
Sbjct: 424 VEEEGSPVAFARRIKRLLSDIPPASVRWVHRQGVK--LDNPYWVDKLIEACEDYQPDLII 481

Query: 512 NNELQKLWSFLFSDFVEQKYF 532
            + LQ++ S +     E    
Sbjct: 482 FDPLQRIHSKVEDRAWEMGEV 502


>gi|218263510|ref|ZP_03477591.1| hypothetical protein PRABACTJOHN_03277 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222633|gb|EEC95283.1| hypothetical protein PRABACTJOHN_03277 [Parabacteroides johnsonii
           DSM 18315]
          Length = 297

 Score = 63.8 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA-LLGCSFIESVQRLAAIAGV 98
           W   P+ +E TPSF  N  K  ++ F     G+  +     +    F+   + +A +A +
Sbjct: 31  WYRSPYREEHTPSFKVNPEKNLWFDFGEGKGGNIFALAGEFIQSGDFLTQARYVAEVADM 90

Query: 99  PLPVVDPK 106
           PL   +P+
Sbjct: 91  PLRDYEPR 98


>gi|10444280|gb|AAG17841.1|AF289050_16 TraP [Bacteroides thetaiotaomicron]
          Length = 288

 Score = 63.8 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 47  DEKTPSFHCNDSKGFYYCFSCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100
            E+TPSF  N +K  +Y F     GD  +    FL       F+   + +A  A + +
Sbjct: 35  GERTPSFRVNVAKQLWYDFGLGKGGDIFTLAGEFLQ---SGDFMAQAKFIAETANMTV 89


>gi|226327185|ref|ZP_03802703.1| hypothetical protein PROPEN_01050 [Proteus penneri ATCC 35198]
 gi|225204403|gb|EEG86757.1| hypothetical protein PROPEN_01050 [Proteus penneri ATCC 35198]
          Length = 245

 Score = 63.8 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 98/282 (34%), Gaps = 39/282 (13%)

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           + L  G+DPDS +R  GK +FEK + ++  L + L+         +T +   +L    + 
Sbjct: 1   MFLPEGDDPDSLVRREGKESFEKRMEQAHSLSEFLFDSLVPQVDLSTQEGNGKLYSLARP 60

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            I+ I  + LR Y  + +             +     R + +   + +      +L  + 
Sbjct: 61  LIDKIPSETLRLYLLRELGSLTG------NPDIEQMDRLFGRTPVNHELSYQPTKLRTTP 114

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVE 528
           +               L+  LI +P   +     + L+  +        L+  L S    
Sbjct: 115 M-------------RILIALLIQNPEFSKLVPPLEGLSTEKIAG---LSLFIELVSVCQA 158

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
           Q      +I +   E  FG+ L++L              + +I ++ +        +   
Sbjct: 159 QPGLNTGQIIELYRENKFGKQLEKLAMW----------NDIDIDEIAEKTFTDTLDHIFL 208

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             +  +   +   IA+   +G  +     + ++  +  ++ +
Sbjct: 209 TAMDERLNTL---IAKERTEGLTQDEREEVQLI--IQARVKK 245


>gi|51512059|gb|AAU05258.1| DNA primase-like protein [Enterobacteria phage T5]
          Length = 296

 Score = 63.8 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 98/332 (29%), Gaps = 87/332 (26%)

Query: 41  ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL 100
              P HD+K PS   +   G  +C SC              G           +I     
Sbjct: 26  CLNPDHDDKHPSLRIDPETGIMHCLSCGFG----------KGIP---------SIYHYFN 66

Query: 101 PVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLG 160
                +  +  +++  +  +   +T     +L         +  D RGI S  ++ +   
Sbjct: 67  ETQYRQSPRLSQVRKKISEIRNGST-----NLAIPESA-YLFEGDFRGISSKTLKKYFAF 120

Query: 161 YAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220
                                                       R++FPI  + G+ I F
Sbjct: 121 QHQADWE------------------------------------GRIVFPITDAVGRNILF 144

Query: 221 GGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGY 280
            GR+++     KYL  P+ +        YN                    +  +ILVEG 
Sbjct: 145 LGRSINSSAPPKYLVKPKQVSPPIFPVRYN--------------------TPVLILVEGI 184

Query: 281 MDVLSLCQAGVQNVVSSLGTA------LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA 334
            D+L+L   G+       GT       + +     +      +V+  D D  G +AA   
Sbjct: 185 FDMLNLEDNGIDYASCCFGTHQFTSDNIADKFSPYIIAGVKIVVILLDNDASGNKAAQAL 244

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
             L+         V   LL  G+DP    +  
Sbjct: 245 AKLIRTKTRLTPVVANFLLPEGKDPGDLNKEE 276


>gi|51245424|ref|YP_065308.1| hypothetical protein DP1572 [Desulfotalea psychrophila LSv54]
 gi|50876461|emb|CAG36301.1| unknown protein [Desulfotalea psychrophila LSv54]
          Length = 534

 Score = 63.8 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 47/380 (12%), Positives = 107/380 (28%), Gaps = 58/380 (15%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPS--FHCNDSKGFYYCFSC 67
           +++    I   I       ++        +   CP       S  F      G + C++C
Sbjct: 5   EIMNTESIVRKIAAEHGLRKKGN-----RFTGPCPECGGSKTSDKFSILLDGG-FKCYAC 58

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAI-----------AGVPLPVVDPKIEKKE----- 111
           + +GD +++L      +  ++    A             A   L        K+      
Sbjct: 59  NFRGDIITWLRKRESMNCPDAHDY-AGRDCRQKDSCPAAAHCRLGNGSAPATKRRPAYRR 117

Query: 112 ----KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167
               + + ++ + + +    +  ++  +    L     E+ +++     +    A     
Sbjct: 118 PSRPRQEEEVQQTLPMVEPQYPKAVWVSWADALVQKAHEKLLETPEQLAY---LASRGID 174

Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRF-RNRLIFPIRSSRGQVIAFGGRTLS 226
           +        G+   +       I           +    L+ PI    G +     R   
Sbjct: 175 AEAVDRFSLGWLSHQQQVLKNKIGLPVDEGKDKLWVPEGLLIPIFDQSGSLHRIRIRR-- 232

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS- 285
                    SPE          YN+   +          V        ++VE  +D ++ 
Sbjct: 233 ---------SPEARAKFLPNLKYNW---MRGAGNMPMALVPEGKIRGAVIVEAELDAMAV 280

Query: 286 --LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343
                      V SLG+ +     + L + +P +++  D +D   + A            
Sbjct: 281 ASAHVDVAAIAVGSLGSGVDPELDQ-LLEQAPVVLVALDAEDKAEKVAD-------MWKE 332

Query: 344 PGNRVNFVLLSRGEDPDSFI 363
                 +   + G+DP    
Sbjct: 333 KYRHAKYYKTTIGKDPGEMF 352


>gi|303326921|ref|ZP_07357363.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862909|gb|EFL85841.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
          Length = 558

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/399 (13%), Positives = 109/399 (27%), Gaps = 93/399 (23%)

Query: 28  DRRKTNAVKGDYWACCPFHDE---KTPSFHCNDSK--------------GFYYCFSCHVK 70
            R+        +   CP       K+  F     +              G + C  C   
Sbjct: 16  KRQGNG-----WNGPCPLCGGEPGKSDRFMVWPDRSESLGETCASHNITGIWSCRRCGAS 70

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF--- 127
           GD +++L  + G  F  ++  L    G P+        +  ++        + A+ +   
Sbjct: 71  GDTIAYLMKIDGLDFKAALAELGIEGGRPVHRRRRAPAEPHRV--------DAASAWTPR 122

Query: 128 -----------FHHSLKNARDKRLH------YYLDERGIDSHAIEMFKLGYAPDSRYSLR 170
                      +   L +  ++R+        +L  RGID  A+  +++GY P       
Sbjct: 123 EWPEPSDVWCAYAAKLLSEAEERIWKQPAALNWLAARGIDEEAVRAYRIGYLPAEGTRYP 182

Query: 171 EHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-- 228
              R +              +              ++ P  ++ G+V+    R   +   
Sbjct: 183 GRYRARSALGLAPRTDDDGREHTKLFIPR-----GIVIPTVAANGRVLNLRFRRHKEDLA 237

Query: 229 ----ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284
               + ++   S +  LF +                      R    S   + E  +D +
Sbjct: 238 PRAAKYMELEGSCKAPLFLRS--------------------SRPAPMSAYFVTEAELDAM 277

Query: 285 SLCQAG--VQNVVSSLGTALTEYQLRLLW-KLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
            +  A   V   ++                + + R+ +  D D+PG              
Sbjct: 278 LIHHATGGVIGAMAVRTNRGKPDMASHARLREAVRVCIALDYDEPGADGVDFWERTYP-- 335

Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380
                         G+DP             + +  +LP
Sbjct: 336 -----ASLRWPTPEGKDPGEAYGMGV--DIREWVAAALP 367


>gi|242309823|ref|ZP_04808978.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523824|gb|EEQ63690.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 386

 Score = 63.4 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/383 (14%), Positives = 118/383 (30%), Gaps = 53/383 (13%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHD--EKTPSFHCNDSKGFYYCF 65
           ++ L   IPI  ++      + +       +Y A    H+  +  PS +  +      CF
Sbjct: 6   LEALKN-IPILEVLSALGSKELKGKFTTCLNYAA----HNNNDGKPSMYVYEKSNVCKCF 60

Query: 66  SCHVKGDHLSFLSALL-GCSFIESVQRLAAIAGVP-----------LPVVDPKIEK---- 109
           +C++ G+ +  ++       FI++ + L A   +P           +P  +    +    
Sbjct: 61  ACNLGGNTIE-VAKFAFNGDFIKACEFLHAHWNIPFLDDSNFTSVNVPRFEAPKREITYM 119

Query: 110 ---KEKIQTDLIRLIEVATDFFHH----SLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162
              KEK      ++ E+   +        LK        + L             +    
Sbjct: 120 EFSKEKEYQS-FKVNELIAGYGLESEEGKLKIVYSFIYRFSLMTEQSKKENYYKGRGINI 178

Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGL-----LIDGDNSATSYDRFRNRLIFPIRSSRGQ- 216
           P  +     +   K   +  +    L         + +   ++   +  I P        
Sbjct: 179 PLDKIGFLSYGDIKSLEKSLLRYFPLEDLVRFKVFNKNRAGWNYSYDVAIVPFFDLYSDL 238

Query: 217 VIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIIL 276
           +  F  R L+         + E  +F  G  +Y                       +I +
Sbjct: 239 ITGFSVRVLNPNN----KGAKELNVF-CGDIIYPMPF--------GLTYQTLKDKEWIWI 285

Query: 277 VEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKA 334
            EG++D LS   +  ++ VS +  A        L     S  +V+CFD D  G ++  + 
Sbjct: 286 CEGHIDALSGIASSKKDNVSFISFAGVYTYKDSLLGLLKSKNVVICFDKDTAGEKSGSEL 345

Query: 335 IDLVLCHLIPGNRVNFVLLSRGE 357
            + +    I     N+       
Sbjct: 346 GEKLRKLGINTFIANWESQYNDL 368


>gi|255012110|ref|ZP_05284236.1| hypothetical protein Bfra3_23422 [Bacteroides fragilis 3_1_12]
          Length = 289

 Score = 63.4 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 34  AVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS----FLSALLGCSFIESV 89
               + W   P+  E+T SF  N +K  +Y F     GD  +    FL       F++  
Sbjct: 17  RSGNELWYLAPYRGERTSSFRVNVAKQLWYDFGLGKGGDIFTLAGEFLQ---SDDFMKQA 73

Query: 90  QRLAAIAGVPL 100
           + +A  A + +
Sbjct: 74  KFIAEAANMTV 84


>gi|301057548|ref|ZP_07198632.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300448356|gb|EFK12037.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 414

 Score = 63.4 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 105/322 (32%), Gaps = 46/322 (14%)

Query: 31  KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84
           K +    + W   PF H+EK  S H + S+  +  FS    G  + F     L      +
Sbjct: 81  KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 139

Query: 85  FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144
             E  + +    G+      PK   K+K +                 L+    +      
Sbjct: 140 MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR--- 194

Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204
             RGI +        G+ P                      + L                
Sbjct: 195 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 238

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            L   I +  G+ ++       +  + KY + P    F K   +YN    L         
Sbjct: 239 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 285

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319
            + + +   +IL EG+ DV  L +AG +N V+ +G A++  Q+  L         PRI+L
Sbjct: 286 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 345

Query: 320 CFDGDDPGLRAAYKAIDLVLCH 341
             D D  G   A +  + +  H
Sbjct: 346 FLDRDPAGKTGALQVRERLFHH 367


>gi|60680973|ref|YP_211117.1| putative DNA primase [Bacteroides fragilis NCTC 9343]
 gi|60492407|emb|CAH07177.1| putative DNA primase [Bacteroides fragilis NCTC 9343]
          Length = 303

 Score = 63.4 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 13 IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72
            IP+ +++ +Y  ++  +       Y    PF  + +PSF    ++  +Y F     G 
Sbjct: 9  NSIPLEDILSRY-GYEPSRRYGGYDMYR--SPFRCDSSPSFKVFRNENRWYDFGDSSHGR 65

Query: 73 HLSFLSALLGCSFIESVQRL 92
           +  +  +  CSF ++++ +
Sbjct: 66 VVDLVMRIQNCSFPQAMKEI 85


>gi|312792360|ref|YP_004025283.1| DnaB domain-containing protein helicase domain-containing protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179500|gb|ADQ39670.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 272

 Score = 63.4 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 58/145 (40%), Gaps = 10/145 (6%)

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E A++  ++    ++ +  + L    +   +L++++  + + F E K      + ++
Sbjct: 11  QEAEEAVIGAMLLSHEVISDVVEILTVEDFATPQLKEIFVAIINLFEENKPVDIITVSEK 70

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L E+G       +   V  +   +             Y   +    + + +SR+  +  K
Sbjct: 71  LREKG-------ILDAVGGSEYLTNLIINTPTTANATYYAKI---VKEKSISRKATKKTK 120

Query: 601 QIAQVTAKGEAEKTAILISILHEVH 625
           ++     KGE +K   L++ L+ ++
Sbjct: 121 ELLAAFEKGELQKAQQLLTELNNIN 145


>gi|31983516|ref|NP_858128.1| putative replication protein [Lactobacillus delbrueckii subsp.
           lactis]
 gi|18077750|emb|CAD13353.1| putative replication protein [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 614

 Score = 63.4 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/403 (12%), Positives = 103/403 (25%), Gaps = 65/403 (16%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK-GFYYCFS-- 66
           DL   + +   I   V  D +        +    P H +K PS   + +   + +CFS  
Sbjct: 10  DLKSLVSLPEYIASVVSMDSKG------FFSCLNPNHPDKHPSMCVDRNHPQYVHCFSAT 63

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126
           C    D                     A+    +         KEK   +   +     D
Sbjct: 64  CQASYDLFD----------------CWALINDGVTETRKNSTGKEKPVYNFNAVASEIAD 107

Query: 127 FFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEA 186
            + ++L       L            A          ++ ++             +    
Sbjct: 108 HYGYTLIGDPANNLPEPPLPEPEPEPAQTSTNFRDQLEAWHANL----------NQTDYL 157

Query: 187 GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK 246
                   +A  ++   + L   I    GQ   +  R L               +    +
Sbjct: 158 QKRGITQTTAEIFNLGYSPLTNSIIIPYGQDGYYVQRAL-------------NPIEKHDR 204

Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS------LGT 300
             +            +           + +VEG  D LS+ Q      V++      L  
Sbjct: 205 YRFPIGQVR------VYNAEALKECKTVFIVEGQFDALSIMQESGVGAVATSASQTQLIV 258

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS-RGEDP 359
              +        ++P I+L  D D  G +A      L       G       ++   +D 
Sbjct: 259 KTLQKFKEQDPTINPTIILSMDNDRAGQKANRA---LQRDLEAHGFTCYVNPVNGDYKDA 315

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
           + F+    +  F + +   +   D    +   +          
Sbjct: 316 NEFL-VKDREGFRQKLQHVINQPDNWLDKYYADIKQRHDYPDN 357


>gi|255016418|ref|ZP_05288544.1| hypothetical protein B2_21136 [Bacteroides sp. 2_1_7]
          Length = 291

 Score = 63.4 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 52/137 (37%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I  +   I +++ + +  +    R        + W   P+ +E+TPSF  N +K  +Y F
Sbjct: 6   IDTMRQ-ISLADFLARLGHEPVRRSGN-----ELWYLAPYRNERTPSFRVNVAKRLWYDF 59

Query: 66  SCHVKGDHLS----------------FLSALLGCSF-------------------IESV- 89
                GD  +                F++      F                   +E+V 
Sbjct: 60  GLGKGGDIFTLAGEFARSGDFMAQARFIAETARMPFVASEKPLFLPEPSEPAFEGVEAVP 119

Query: 90  -------QRLAAIAGVP 99
                  + LA   G+P
Sbjct: 120 LLRSPLTEYLAER-GIP 135


>gi|53712526|ref|YP_098518.1| DNA primase [Bacteroides fragilis YCH46]
 gi|52215391|dbj|BAD47984.1| DNA primase [Bacteroides fragilis YCH46]
          Length = 301

 Score = 63.4 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 28 DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS 84
           ++  N      W    F +E  PSF  N ++  +Y F     G+ + F+    G  
Sbjct: 24 KKQGNNV-----WYFSSFRNESEPSFKVNLARNLWYDFGLGKGGNLIEFIMEQHGID 75


>gi|206558487|ref|YP_002229247.1| hypothetical protein BCAL0083 [Burkholderia cenocepacia J2315]
 gi|198034524|emb|CAR50389.1| hypothetical phage protein [Burkholderia cenocepacia J2315]
          Length = 930

 Score = 63.4 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63
           I +L  HI + +L  + +   R      +  Y    P H +++PS          G  + 
Sbjct: 4   IDELKRHIDLHDLASR-LGLKR-GRGGDRALYH--SPQHADRSPSLSIYANHPKYGTGWR 59

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
             S    G  +  +    G +  ++V+ L    G+P     P   +++ 
Sbjct: 60  DHSADAGGSCIDLVIHARGGTVADAVRYLHDAYGLPSERPAPLERREKS 108


>gi|317505398|ref|ZP_07963322.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315663488|gb|EFV03231.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 190

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + +  +    PI   + +       ++      Y    PF ++  PSF  +  K 
Sbjct: 1   MK--EEDLSRIK-RYPIVEYLERK-GIKPVRSTPAYALYR--SPFREDTHPSFKVDTEKN 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLI 118
            +  ++    G  +     L GC+ +E+++ L        P       ++E  +  + L 
Sbjct: 55  LWIDYAESKGGSIIDLCMRLEGCTLLEAIRHLGRNT----PDYTACSPQRECVQETSKLE 110

Query: 119 RLIEVAT 125
            + + A+
Sbjct: 111 SIRQAAS 117


>gi|182682933|ref|YP_001837057.1| putative DNA replication primase [Enterobacteria phage EPS7]
 gi|182630645|gb|ACB97577.1| putative DNA replication primase [Enterobacteria phage EPS7]
          Length = 296

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 98/332 (29%), Gaps = 87/332 (26%)

Query: 41  ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL 100
              P HD+K PS   +   G  +C SC              G           +I     
Sbjct: 26  CLNPDHDDKHPSLRIDPESGIMHCLSCGFG----------RGIP---------SIYHYFN 66

Query: 101 PVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLG 160
                +  +  +++  +  +   +T     +L         +  D RGI S  ++ +   
Sbjct: 67  ETQYRQSPRLSQVRKKISEIRNGST-----NLAIPESA-YLFEGDFRGISSKTLKKYFAF 120

Query: 161 YAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220
                                                       R++FPI  + G+ I F
Sbjct: 121 QHQADWE------------------------------------GRIVFPITDAVGRNILF 144

Query: 221 GGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGY 280
            GR+++     KYL  P+ +        YN                    +  +ILVEG 
Sbjct: 145 LGRSINSSAPPKYLVKPKQVSPPIFPVRYN--------------------TPVLILVEGI 184

Query: 281 MDVLSLCQAGVQNVVSSLGTA------LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA 334
            D+L+L   GV       GT       + +     +      +V+  D D  G +AA   
Sbjct: 185 FDMLNLEDNGVDYASCCFGTHQFTSDNIADKFSPYIIAGVRVVVILLDNDASGNKAAQAL 244

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
             L+         +   LL  G+DP    +  
Sbjct: 245 AKLIRTKTRLTPVIGNFLLPEGKDPGDLNKEE 276


>gi|325281913|ref|YP_004254455.1| hypothetical protein Odosp_3316 [Odoribacter splanchnicus DSM
          20712]
 gi|324313722|gb|ADY34275.1| hypothetical protein Odosp_3316 [Odoribacter splanchnicus DSM
          20712]
          Length = 322

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 5  RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           + +  +     I   + +       +       Y    P  +E  PSF  +  K  +  
Sbjct: 3  EEDLSAIK-RYSIVEYLERK-GIKPVRKTPTYAMYR--SPLREETRPSFKVDTEKNLWID 58

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
          ++    G  +     L G +F E++ RL   A
Sbjct: 59 YAEGRGGSIIDLCMRLEGYTFSEAICRLGQNA 90


>gi|256839497|ref|ZP_05545006.1| DNA primase [Parabacteroides sp. D13]
 gi|256738427|gb|EEU51752.1| DNA primase [Parabacteroides sp. D13]
          Length = 341

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 12 LIHIPISNL----IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
             + I+++    I  Y+            G+ W   PF  E  PSF  N     +Y F 
Sbjct: 14 KKRMTITDVKQIRISDYLHSLGYNPVKQQGGNLWYKSPFRQESEPSFKVNTELNLWYDFG 73

Query: 67 CHVKGDHLSFLSA 79
              G+ ++    
Sbjct: 74 AGKGGNIIALAQE 86


>gi|295135260|ref|YP_003585936.1| DNA primase [Zunongwangia profunda SM-A87]
 gi|294983275|gb|ADF53740.1| DNA primase [Zunongwangia profunda SM-A87]
          Length = 299

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 32  TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91
           +     DYW   P  +EKTPSF  N     +Y       G+ + F  A  GCS  E + +
Sbjct: 30  SKIRNNDYWYRSPLREEKTPSFKVNRKLNRWYDHGLGKGGNMIDFGIAHYGCSVGEFLNK 89

Query: 92  LAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120
           L   +    P+     +  + E     L  +
Sbjct: 90  LNGRSSFQAPLKSIPKRENEPEHQLKILKEV 120


>gi|312889576|ref|ZP_07749126.1| zinc finger CHC2-family protein [Mucilaginibacter paludis DSM
           18603]
 gi|311297924|gb|EFQ75043.1| zinc finger CHC2-family protein [Mucilaginibacter paludis DSM
           18603]
          Length = 318

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 67/214 (31%), Gaps = 19/214 (8%)

Query: 10  DLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           ++   + ++ L+ +  Y          +            +  PS   ND  G +Y    
Sbjct: 9   EIREQVSLAGLLTRLGYYPVRASGKEHLYISMLRDS----DTNPSLAVNDDLGVWYDHGL 64

Query: 68  HVKGDHLSF-LSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL----IRL-- 120
              G+ + F L+     SF E ++++ A++ +PL    P  E   + +  L     ++  
Sbjct: 65  GKGGNVIDFSLAYWPNLSFKEVLEKIVAVSNLPLTGQKPDAEPNTRRKHALKVPHYQIED 124

Query: 121 -----IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
                   A   +                    ++    +  +   A          +R 
Sbjct: 125 IKELGNNPAITAYLQQRGVWEAAEGRLKEIYYYVEDEKKQRKQFFAAGWQNEVQGWEVRN 184

Query: 176 KGFSEEKIIEAGLLIDGDNSA-TSYDRFRNRLIF 208
           K F      +   LI G+N     ++ + N L +
Sbjct: 185 KYFKGCLGHKGLTLIPGENDRLAVFEGYINYLSW 218


>gi|283851926|ref|ZP_06369202.1| P4 alpha zinc-binding domain protein [Desulfovibrio sp. FW1012B]
 gi|283572650|gb|EFC20634.1| P4 alpha zinc-binding domain protein [Desulfovibrio sp. FW1012B]
          Length = 426

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 17/78 (21%)

Query: 23 QYVDWDRRKTNAVKGDYWACCPFH--DEKTPSFHCNDSK------GFYYCFSCHVKGDHL 74
          +YV       NA        CP+   +++   F            G + C  C  +GD +
Sbjct: 12 KYVSGTSGGENA------GPCPWCGGEDR---FRVWPDHPSGATGGRFLCRGCGRQGDGI 62

Query: 75 SFLSALLGCSFIESVQRL 92
          +FL    G S+ ++ +RL
Sbjct: 63 AFLMEREGLSYPDACKRL 80


>gi|295092381|emb|CBK78488.1| DNA primase (bacterial type) [Clostridium cf. saccharolyticum
          K10]
          Length = 126

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSF 85
             CPFHD+ TPS +  +     YCFSC    D+L F+   L   F
Sbjct: 34 RCSCPFHDDHTPSMYLYNDSNLAYCFSCQKSWDNLEFIGEKLDLDF 79


>gi|209972945|ref|YP_002300392.1| gp21.95 [Bacillus phage SPO1]
 gi|209871265|gb|ACI91021.1| gp21.95 [Bacillus phage SPO1]
          Length = 344

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 101/339 (29%), Gaps = 42/339 (12%)

Query: 32  TNAVKGDYWA-CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQ 90
           +   +  Y    C   ++     + +  K  Y C +C  KG  +  LS +   S+ E+++
Sbjct: 19  SKGDQYSYKCRLC---NDWKDRLYVSFDKQVYKCHNCEAKGTVVGLLSDVNHISYSEALK 75

Query: 91  RLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGID 150
                 G       P+  + E     ++   +         L+  +             D
Sbjct: 76  IFREYEG---ERRLPEDIEIEVYNRLIVGTTDE--------LEVPKTAFDLPEEFILLED 124

Query: 151 SHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPI 210
           +      K      SR    +   Q      +  +    I   +       +     + +
Sbjct: 125 AKGEAGRKAVRYIKSRGISLKTAEQNYLGYCEHGQYKNRIIMPDFEKGDLVYWQARTW-L 183

Query: 211 RSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS 270
              + ++     R +      +        ++HK + + N                    
Sbjct: 184 PKPKDRIKKKFYRKVLNPSLSEEDKERGLNVYHKSEIISNIDN--------------VLD 229

Query: 271 SSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL---WKLSPRIVLCFDGDDPG 327
           S   I+ EG MD L +            G ++++ Q   L         IV+  DGD   
Sbjct: 230 SGMAIICEGKMDSLKIG----PLGACIHGKSMSDTQFIKLVKNKDKIHTIVVMLDGD--- 282

Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
             A  +A+D+        + V  V+L + +DP    R  
Sbjct: 283 --ALQQALDICERLSKHFSDVYIVVLPKDKDPGDLSRSE 319


>gi|301061119|ref|ZP_07201913.1| conserved domain protein [delta proteobacterium NaphS2]
 gi|300444788|gb|EFK08759.1| conserved domain protein [delta proteobacterium NaphS2]
          Length = 522

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 105/322 (32%), Gaps = 46/322 (14%)

Query: 31  KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84
           K +    + W   PF H+EK  S H + S+  +  FS    G  + F     L      +
Sbjct: 189 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 247

Query: 85  FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144
             E  + +    G+      PK   K+K +                 L+    +      
Sbjct: 248 MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR--- 302

Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204
             RGI +        G+ P                      + L                
Sbjct: 303 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 346

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            L   I +  G+ ++       +  + KY + P    F K   +YN    L         
Sbjct: 347 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 393

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319
            + + +   +IL EG+ DV  L +AG +N V+ +G A++  Q+  L         PRI+L
Sbjct: 394 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 453

Query: 320 CFDGDDPGLRAAYKAIDLVLCH 341
             D D  G   A +  + +  H
Sbjct: 454 FLDRDPAGKTGALQVRERLFHH 475


>gi|303246617|ref|ZP_07332895.1| P4 alpha zinc-binding domain protein [Desulfovibrio
          fructosovorans JJ]
 gi|302491957|gb|EFL51835.1| P4 alpha zinc-binding domain protein [Desulfovibrio
          fructosovorans JJ]
          Length = 418

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 32 TNAVKGDYWACCPFHDEKTPSFHCNDS---KGFYYCFSCHVKGDHLSFLSALLGCSFIES 88
          +    G+Y   CP+    T  F    +    G + C  C  +GD + FL  + G S+ ++
Sbjct: 17 SATSGGEYAGPCPWCSG-TDRFRLWPAEGATGRWMCRGCGRQGDGIQFLRDMEGLSYPDA 75

Query: 89 VQRL 92
           +RL
Sbjct: 76 CKRL 79


>gi|255038912|ref|YP_003089533.1| DNA primase [Dyadobacter fermentans DSM 18053]
 gi|254951668|gb|ACT96368.1| DNA primase [Dyadobacter fermentans DSM 18053]
          Length = 311

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 18/41 (43%)

Query: 35 VKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75
             D+W   PF DEKTPSF  N     YY       GD + 
Sbjct: 26 RGQDHWYLSPFRDEKTPSFKVNARLNVYYDHGSGQGGDIID 66


>gi|301061547|ref|ZP_07202309.1| integrase core domain protein [delta proteobacterium NaphS2]
 gi|301062092|ref|ZP_07202793.1| integrase core domain protein [delta proteobacterium NaphS2]
 gi|300443818|gb|EFK07882.1| integrase core domain protein [delta proteobacterium NaphS2]
 gi|300444355|gb|EFK08358.1| integrase core domain protein [delta proteobacterium NaphS2]
          Length = 893

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 105/322 (32%), Gaps = 46/322 (14%)

Query: 31  KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84
           K +    + W   PF H+EK  S H + S+  +  FS    G  + F     L      +
Sbjct: 560 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 618

Query: 85  FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144
             E  + +    G+      PK   K+K +                 L+    +      
Sbjct: 619 MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR--- 673

Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204
             RGI +        G+ P                      + L                
Sbjct: 674 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 717

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            L   I +  G+ ++       +  + KY + P    F K   +YN    L         
Sbjct: 718 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 764

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319
            + + +   +IL EG+ DV  L +AG +N V+ +G A++  Q+  L         PRI+L
Sbjct: 765 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 824

Query: 320 CFDGDDPGLRAAYKAIDLVLCH 341
             D D  G   A +  + +  H
Sbjct: 825 FLDRDPAGKTGALQVRERLFHH 846


>gi|301062668|ref|ZP_07203290.1| integrase core domain protein [delta proteobacterium NaphS2]
 gi|300443227|gb|EFK07370.1| integrase core domain protein [delta proteobacterium NaphS2]
          Length = 828

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 105/322 (32%), Gaps = 46/322 (14%)

Query: 31  KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84
           K +    + W   PF H+EK  S H + S+  +  FS    G  + F     L      +
Sbjct: 495 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 553

Query: 85  FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144
             E  + +    G+      PK   K+K +                 L+    +      
Sbjct: 554 MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR--- 608

Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204
             RGI +        G+ P                      + L                
Sbjct: 609 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 652

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            L   I +  G+ ++       +  + KY + P    F K   +YN    L         
Sbjct: 653 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 699

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319
            + + +   +IL EG+ DV  L +AG +N V+ +G A++  Q+  L         PRI+L
Sbjct: 700 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 759

Query: 320 CFDGDDPGLRAAYKAIDLVLCH 341
             D D  G   A +  + +  H
Sbjct: 760 FLDRDPAGKTGALQVRERLFHH 781


>gi|301057704|ref|ZP_07198777.1| integrase core domain protein [delta proteobacterium NaphS2]
 gi|300448165|gb|EFK11857.1| integrase core domain protein [delta proteobacterium NaphS2]
          Length = 894

 Score = 62.2 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 105/322 (32%), Gaps = 46/322 (14%)

Query: 31  KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84
           K +    + W   PF H+EK  S H + S+  +  FS    G  + F     L      +
Sbjct: 561 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 619

Query: 85  FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144
             E  + +    G+      PK   K+K +                 L+    +      
Sbjct: 620 MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR--- 674

Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204
             RGI +        G+ P                      + L                
Sbjct: 675 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 718

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            L   I +  G+ ++       +  + KY + P    F K   +YN    L         
Sbjct: 719 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 765

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319
            + + +   +IL EG+ DV  L +AG +N V+ +G A++  Q+  L         PRI+L
Sbjct: 766 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 825

Query: 320 CFDGDDPGLRAAYKAIDLVLCH 341
             D D  G   A +  + +  H
Sbjct: 826 FLDRDPAGKTGALQVRERLFHH 847


>gi|301060282|ref|ZP_07201147.1| integrase core domain protein [delta proteobacterium NaphS2]
 gi|300445595|gb|EFK09495.1| integrase core domain protein [delta proteobacterium NaphS2]
          Length = 894

 Score = 62.2 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 105/322 (32%), Gaps = 46/322 (14%)

Query: 31  KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84
           K +    + W   PF H+EK  S H + S+  +  FS    G  + F     L      +
Sbjct: 561 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 619

Query: 85  FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144
             E  + +    G+      PK   K+K +                 L+    +      
Sbjct: 620 MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR--- 674

Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204
             RGI +        G+ P                      + L                
Sbjct: 675 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 718

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            L   I +  G+ ++       +  + KY + P    F K   +YN    L         
Sbjct: 719 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 765

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319
            + + +   +IL EG+ DV  L +AG +N V+ +G A++  Q+  L         PRI+L
Sbjct: 766 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 825

Query: 320 CFDGDDPGLRAAYKAIDLVLCH 341
             D D  G   A +  + +  H
Sbjct: 826 FLDRDPAGKTGALQVRERLFHH 847


>gi|301057820|ref|ZP_07198889.1| integrase core domain protein [delta proteobacterium NaphS2]
 gi|301063010|ref|ZP_07203575.1| integrase core domain protein [delta proteobacterium NaphS2]
 gi|300442891|gb|EFK07091.1| integrase core domain protein [delta proteobacterium NaphS2]
 gi|300448131|gb|EFK11827.1| integrase core domain protein [delta proteobacterium NaphS2]
          Length = 894

 Score = 62.2 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 105/322 (32%), Gaps = 46/322 (14%)

Query: 31  KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84
           K +    + W   PF H+EK  S H + S+  +  FS    G  + F     L      +
Sbjct: 561 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 619

Query: 85  FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144
             E  + +    G+      PK   K+K +                 L+    +      
Sbjct: 620 MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR--- 674

Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204
             RGI +        G+ P                      + L                
Sbjct: 675 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 718

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            L   I +  G+ ++       +  + KY + P    F K   +YN    L         
Sbjct: 719 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 765

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319
            + + +   +IL EG+ DV  L +AG +N V+ +G A++  Q+  L         PRI+L
Sbjct: 766 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 825

Query: 320 CFDGDDPGLRAAYKAIDLVLCH 341
             D D  G   A +  + +  H
Sbjct: 826 FLDRDPAGKTGALQVRERLFHH 847


>gi|301059052|ref|ZP_07200011.1| integrase core domain protein [delta proteobacterium NaphS2]
 gi|300446848|gb|EFK10654.1| integrase core domain protein [delta proteobacterium NaphS2]
          Length = 894

 Score = 62.2 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 105/322 (32%), Gaps = 46/322 (14%)

Query: 31  KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84
           K +    + W   PF H+EK  S H + S+  +  FS    G  + F     L      +
Sbjct: 561 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 619

Query: 85  FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144
             E  + +    G+      PK   K+K +                 L+    +      
Sbjct: 620 MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANAGTNPAIKIDLRRYLRTDHPELCR--- 674

Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204
             RGI +        G+ P                      + L                
Sbjct: 675 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 718

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            L   I +  G+ ++       +  + KY + P    F K   +YN    L         
Sbjct: 719 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 765

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319
            + + +   +IL EG+ DV  L +AG +N V+ +G A++  Q+  L         PRI+L
Sbjct: 766 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 825

Query: 320 CFDGDDPGLRAAYKAIDLVLCH 341
             D D  G   A +  + +  H
Sbjct: 826 FLDRDPAGKTGALQVRERLFHH 847


>gi|325855339|ref|ZP_08171826.1| hypothetical protein HMPREF9303_1660 [Prevotella denticola CRIS
           18C-A]
 gi|325483844|gb|EGC86795.1| hypothetical protein HMPREF9303_1660 [Prevotella denticola CRIS
           18C-A]
          Length = 328

 Score = 62.2 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 8/119 (6%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + +  +    PI   + +       +       Y    P  +E  PSF  +  + 
Sbjct: 1   MTMKEEDLSRIK-RYPIVEYLERK-GIKPMRRTPAYALYR--SPLREETHPSFKVDTEQN 56

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA----GVPLPVVDPKIEKKEKIQT 115
            +  ++    G  +     L GC+  E+++ L   A     VP         K+E I+ 
Sbjct: 57  LWIDYAEGRGGSIIDLCMRLEGCTLSEAIRILGQNAPDITHVPRRESLQGTSKQESIRQ 115


>gi|237711273|ref|ZP_04541754.1| TraP [Bacteroides sp. 9_1_42FAA]
 gi|229455117|gb|EEO60838.1| TraP [Bacteroides sp. 9_1_42FAA]
          Length = 299

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 56/196 (28%), Gaps = 26/196 (13%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
             +   +PI + + +            + D W   P+ +E+TPSF  N  +  ++ F   
Sbjct: 4   DRIRG-LPIEDFLAR---LGYSPVWRKRNDLWYNAPYREERTPSFKVNTDRNVWFDFGLG 59

Query: 69  VKGDHLSFLSALLG-CSFIESVQRLAAIAG---VPLP-------VVDPKIEKKEKIQTDL 117
             GD  +    L G   F+   + ++ +AG   V LP              ++ + +T L
Sbjct: 60  RGGDIFTLAGELAGSTDFLTQAKYISEVAGGDFVSLPTPRPAKVRASEPAFQEVEQRTLL 119

Query: 118 IRLI-----------EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSR 166
             ++           EVA             K       +       +           +
Sbjct: 120 YDVLKGYLSERGIPSEVAARHCRQVSYRVHGKPYFAIGFQNVSGGWELRSRLFKGGIPPK 179

Query: 167 YSLREHLRQKGFSEEK 182
                  +        
Sbjct: 180 DISLVSRQGTPTDACD 195


>gi|78101045|pdb|1Z8S|A Chain A, Dnab Binding Domain Of Dnag (P16) From Bacillus
           Stearothermophilus (Residues 452-597)
          Length = 146

 Score = 61.8 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 52/157 (33%), Gaps = 14/157 (8%)

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
           +  KL       E  LL  ++    +     + +   R++  E + L +++++ + E   
Sbjct: 1   MAKKLLPAFQNAERLLLAHMMRSRDVALVVQERIGG-RFNIEEHRALAAYIYAFYEEGHE 59

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
             P  +  R+          +L     +  L     + +  ++    +  L   K     
Sbjct: 60  ADPGALISRIPG--------ELQPLASELSLLLIADDVSEQELEDYIRHVLNRPKWL--- 108

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
               +  E++  +   + +    A +   + E+   +
Sbjct: 109 --MLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKML 143


>gi|315607637|ref|ZP_07882632.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315250820|gb|EFU30814.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 333

 Score = 61.8 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 5  RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
          ++ +  +    PI   + +       +       Y    P  +E  PSF  +  K  +  
Sbjct: 2  KEDLSLIK-RYPIVEYLERK-GIKPVRRTPAYALYR--SPLREETHPSFKVDTEKNLWID 57

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
          ++    G  +     +  CS  E+++ L   A
Sbjct: 58 YAEGRGGSIIDLCMRMERCSLSEAIRLLGRNA 89


>gi|257451828|ref|ZP_05617127.1| primase-helicase [Fusobacterium sp. 3_1_5R]
 gi|317058383|ref|ZP_07922868.1| predicted protein [Fusobacterium sp. 3_1_5R]
 gi|313684059|gb|EFS20894.1| predicted protein [Fusobacterium sp. 3_1_5R]
          Length = 337

 Score = 61.8 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 17/157 (10%)

Query: 27  WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL-SALLGCSF 85
            +++  N     +    P H++K PS   +       C +C  K D   F+       +F
Sbjct: 15  LEKKGINTKTA-FRCVSPQHEDKHPSMLYSKKYKKCTCLACGEKYDIFKFVGMEYNLPTF 73

Query: 86  IESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRLIEVA----------TDFFHHSLK 133
            E ++++      P  +  ++  +  K+  +  L ++ E              +F    K
Sbjct: 74  KEQLKKIQEFMKNPELIENINKTVYSKKNTEVSLHKVEEKIVPVEKKYPPLAYYFRDCKK 133

Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLR 170
           N            RGI     + + +GY P  +    
Sbjct: 134 NILKTDYLIN---RGISREIQDKYNIGYDPQFKNGTW 167


>gi|148727114|ref|YP_001285608.1| gp32 [Propionibacterium phage PA6]
 gi|91982938|gb|ABE68601.1| gp32 [Propionibacterium phage PA6]
          Length = 133

 Score = 61.8 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
          N  + +    CPFHD+  PS   N  KG +YC +C + G
Sbjct: 27 NPSRNEQHILCPFHDDHQPSMSINLDKGVWYCHTCGIGG 65


>gi|260593171|ref|ZP_05858629.1| putative mobilizable transposon, excision protein [Prevotella
          veroralis F0319]
 gi|260534879|gb|EEX17496.1| putative mobilizable transposon, excision protein [Prevotella
          veroralis F0319]
          Length = 333

 Score = 61.8 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 5  RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
          ++ +  +    PI   + +       +       Y    P  +E  PSF  +  K  +  
Sbjct: 2  KEDLSLIK-RYPIVEYLERK-GIKPVRRTPAYALYR--SPLREETHPSFKVDTEKNLWID 57

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
          ++    G  +     +  CS  E+++ L   A
Sbjct: 58 YAEGRGGSIIDLCMRMERCSLSEAIRLLGRNA 89


>gi|213962117|ref|ZP_03390381.1| type III restriction enzyme, res subunit family [Capnocytophaga
           sputigena Capno]
 gi|213955123|gb|EEB66441.1| type III restriction enzyme, res subunit family [Capnocytophaga
           sputigena Capno]
          Length = 2020

 Score = 61.4 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 16/177 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKT----NAVKGDYWACCPFHDEKTPSFHCNDS 58
           +    I++++ +  I +    +   +R+           DY+      +EK   F   D 
Sbjct: 4   FSPQDIENIVNNTSIVDY---FFYLERQGRVKFDRQRGHDYYFL--TDNEK---FSV-DE 54

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
           KG YY F     G     +  L   ++ E+V+ L   +   +     K +K E  +    
Sbjct: 55  KG-YYDFKAGKGGQIFKAVMELEKKTWKEAVEFLKDFSNTTIS-QSVKNQKTENKRPTPT 112

Query: 119 RLI-EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
           +   E A       +    + +L  Y   RGI    ++ +       +    + +  
Sbjct: 113 QHYTEKAPSTKITQVTIPNNDKLLEYFAGRGISKEILQQYAQQVHYRNNSDGKNYFG 169


>gi|157964606|ref|YP_001499430.1| conjugal transfer protein TraA [Rickettsia massiliae MTU5]
 gi|157844382|gb|ABV84883.1| Conjugal transfer protein TraA [Rickettsia massiliae MTU5]
          Length = 1378

 Score = 61.4 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 100/318 (31%), Gaps = 15/318 (4%)

Query: 60   GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
            G +Y FS    GD  + +     C F+E+ + L  + GV       + + KE+    +  
Sbjct: 894  GRWYDFSKGEGGDLFTLVQREKNCDFVEAKKYLQNMVGVSNNSKLLEDKIKEQFDQKVKN 953

Query: 120  LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              + A             +           +     ++        RY       +K  +
Sbjct: 954  QDQQAK----------YTEISKIKRAISLYEKSDSIIYMTPNNIAKRYLSEHRGIKKILT 1003

Query: 180  EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              ++     L       ++  ++   LI   R+  G +       L+K  + K       
Sbjct: 1004 GYQL--NNDLRTNMMWDSNSKQYYPALIAFARNKDGNITGGQSIYLNKDTNNKADIEVNK 1061

Query: 240  ILFHKGKNLYN-FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
              F + +  +               KD   ++S+  I+ EG    LS+ +AG++  +   
Sbjct: 1062 RSFGRIRGSFVEISKNNEQQNVQSSKDGNNSASNVTIIAEGLETTLSIAEAGIKGKILCS 1121

Query: 299  GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
                       +     RI++  D D     + +  +      +  G  V+ +      D
Sbjct: 1122 LGVSNIRNYEPIKG--ERIIITADNDGKDAVSVHTVMKAQEELISKGAVVSIIRPPEEGD 1179

Query: 359  PDSFIRCYGKTAFEKLIV 376
             +  ++  G  +   LI 
Sbjct: 1180 FNDMLKSQGAESINNLIE 1197


>gi|284036884|ref|YP_003386814.1| hypothetical protein Slin_1970 [Spirosoma linguale DSM 74]
 gi|283816177|gb|ADB38015.1| hypothetical protein Slin_1970 [Spirosoma linguale DSM 74]
          Length = 306

 Score = 61.4 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 13 IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72
            IPI+ ++       R+ ++     +    P  +EKT SFH N     ++ F   + GD
Sbjct: 11 NTIPIAEIL---TKLGRKPSHTNNHKHRYLSPLRNEKTASFHLNTKTNRWHDFGEGIGGD 67

Query: 73 HLSFLSALLGCSF-----IESVQRLAAIA 96
           ++F+ A L  +       ++++ +  +A
Sbjct: 68 TVNFVRAYLKATKEADTTSDALRWINNMA 96


>gi|325860417|ref|ZP_08173529.1| hypothetical protein HMPREF9303_0161 [Prevotella denticola CRIS
           18C-A]
 gi|325482075|gb|EGC85096.1| hypothetical protein HMPREF9303_0161 [Prevotella denticola CRIS
           18C-A]
          Length = 355

 Score = 61.4 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 14/97 (14%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRK-----TNAVKGDYWACCPFHDEKTPSFHCNDSK 59
            + +  +     I +        +R+             Y    PF +E  PSF  +  K
Sbjct: 36  EEDLSAIK-RYSIVDY------LERKGIRPVLRTPAYAMYR--SPFREETHPSFKVDREK 86

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
             +  ++    G  +     L GC+  E++ RL   A
Sbjct: 87  NLWIDYAEGRGGSIIDLYMCLEGCTLSEAICRLGQNA 123


>gi|120602099|ref|YP_966499.1| plasmid/phage primase [Desulfovibrio vulgaris DP4]
 gi|120562328|gb|ABM28072.1| plasmid/phage primase, P4 family [Desulfovibrio vulgaris DP4]
          Length = 828

 Score = 61.4 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 101/353 (28%), Gaps = 50/353 (14%)

Query: 41  ACCPFHDEKTPSFHCNDSKGFYYCF-SCHVKGDHLSFLSALLGCS------FIESVQRLA 93
             CP HD++  SF  N  +  ++CF  C   GD +     + G        F    +  A
Sbjct: 33  GLCPLHDDQNQSFSYNVDEDVFHCFRQCVEDGDLVDLYCNVRGLPLRSGEGFKAFRREFA 92

Query: 94  AIAGV-PLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSH 152
           A AGV       P   +K           EVA+D      K+   +     L+       
Sbjct: 93  ADAGVGQPARRTPGEARKR----------EVASD------KSEAKREPRQNLEIPEAVYE 136

Query: 153 AIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR----NRLIF 208
           A+                 HLR             LL      +  Y  F      R++ 
Sbjct: 137 AMTPV-----TPDWGLRLLHLRGWSRETIDGYGVRLLSHFRRKSDLYSVFPLKSIERVVI 191

Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRR 268
           P+R ++G +                 ++       + K    F     +    +      
Sbjct: 192 PVRDAQGVLRNLRC-----------YHALGKPQGDQPKI---FSWGRGHGASMLFPPASM 237

Query: 269 NSSSFIILVEGYMDVL-SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPG 327
                ++L EG  D L +L +       +       E     L     ++ + +D D  G
Sbjct: 238 LRPGSVLLCEGEGDCLCALSRGLNAITQTGKPNEWPEDHANALAG--RKVTIAYDADQAG 295

Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380
            + A  A   +         + +       D  ++   +G+   +  +     
Sbjct: 296 QKYALAAAKNLARKGCAVTIIKWPAFMGLRDDGTWPEDHGQDLTDYFVKHGKD 348


>gi|312792348|ref|YP_004025271.1| hypothetical protein Calkr_0081 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179488|gb|ADQ39658.1| protein of unknown function DUF927 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 838

 Score = 61.4 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 41  ACCPFHDEKTPSFHCNDSKGFYYC-FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
           A CPFHD++  SF    S G + C   C   G+ ++FL+ + G +  E+ + L   AG+ 
Sbjct: 36  AQCPFHDDQHNSFWFRVSNGCWKCEAGCG-GGNAVTFLARIEGITQKEAYRHLLKEAGL- 93

Query: 100 LPVVDPKIEKKEKIQTDLIR 119
                 + ++K K++  L  
Sbjct: 94  ----LDENKEKGKMKYTLED 109


>gi|256838532|ref|ZP_05544042.1| conjugal transfer protein TraP [Parabacteroides sp. D13]
 gi|256739451|gb|EEU52775.1| conjugal transfer protein TraP [Parabacteroides sp. D13]
          Length = 294

 Score = 61.4 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 1   MNYPRDF-IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           M       I  +   I +++ + +  +    R        + W   P+ +E+TPSF  N 
Sbjct: 2   MRRMERTDIDTMRQ-ISLADFLARLGHEPVRRSGN-----ELWYRAPYRNERTPSFRVNV 55

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAAIAGVPL 100
           +K  +Y F     GD  +          F+   + +A  A +PL
Sbjct: 56  AKRLWYDFGLGRGGDIFTLAGEFARSGDFMAQARFIAETARMPL 99


>gi|312794921|ref|YP_004027843.1| hypothetical protein RBRH_00858 [Burkholderia rhizoxinica HKI 454]
 gi|312166696|emb|CBW73699.1| unnamed protein product [Burkholderia rhizoxinica HKI 454]
          Length = 931

 Score = 61.4 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFH--CNDSK-GF-YY 63
           + +L   I + +L    +   R      K  Y    P H++K PS     N +K G  + 
Sbjct: 4   LDELKRLIDLHDL-ANRLGLKR-GHGGDKALYH--SPLHEDKNPSLSIYVNHAKYGTGWR 59

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
             S +V G  +  +    G S  ++++ L     +P+        +++ 
Sbjct: 60  DHSANVGGSCVDLVMHARGGSVADAIRYLHDAYAIPIERPAQLERREKS 108


>gi|288817846|ref|YP_003432193.1| hypothetical protein HTH_0529 [Hydrogenobacter thermophilus TK-6]
 gi|288787245|dbj|BAI68992.1| hypothetical protein HTH_0529 [Hydrogenobacter thermophilus TK-6]
 gi|308751443|gb|ADO44926.1| hypothetical protein Hydth_0526 [Hydrogenobacter thermophilus TK-6]
          Length = 650

 Score = 61.4 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDY--WACCPFHD-EKTPSFHCNDSKGFYY--- 63
            +     I   I + + +           Y     CPFH  ++TPSF        Y+   
Sbjct: 233 KIKNIEEIVREIKKRIKFKDLGLEGEDYGYYERISCPFHPPDRTPSFV------IYHNGD 286

Query: 64  -----CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
                 F      D +     L    FI +V+ LA  AG+ + V+  + +KK + +  L 
Sbjct: 287 GDVGVDFHTGEAHDIIGIYQKLYEKDFITAVRELAQRAGIKV-VLSSEEKKKLQKEQALA 345

Query: 119 R 119
            
Sbjct: 346 D 346


>gi|88704446|ref|ZP_01102160.1| replicative DNA helicase [Congregibacter litoralis KT71]
 gi|88701497|gb|EAQ98602.1| replicative DNA helicase [Congregibacter litoralis KT71]
          Length = 479

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 59/183 (32%), Gaps = 10/183 (5%)

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
              + +     Q+  S R     + + KL  +    E +++  L+          + ++ 
Sbjct: 5   SPQQSSYPRGSQQSQSNRPYDGDVARIKLQPQSIEAEQSVIGGLMISQDAWDSVAEMVSP 64

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
             +   + + ++  +       +      +  +L      +L  +LD     A L     
Sbjct: 65  EDFYRPDHRLIFRQIRHLAEAAQPVDVVTLADQL------QLSGELDAAGGHAYLSELAE 118

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                   + Y Q +    R R   R   E  ++IA      E   +A LI     + +Q
Sbjct: 119 NTPSASNIRAYAQVV----RERSALRSLIEAAQEIADSGFTPEGRTSAELIDEAERLIMQ 174

Query: 628 IHQ 630
           I +
Sbjct: 175 IGE 177


>gi|282879672|ref|ZP_06288402.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
 gi|281306341|gb|EFA98371.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
          Length = 330

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 5  RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
          ++ +  +    PI   + +  D    +  A    Y  C P  +E  PSF  +  K  +  
Sbjct: 3  KEDLSRIK-RYPIVEYLERK-DIKPVRRTAAYALY--CSPLREETHPSFKVDTEKNLWID 58

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
          +     G  +     + GC   E+++RL   A
Sbjct: 59 YGEGRGGSIIDLCIRMEGCMLSEAIRRLGQNA 90


>gi|309800317|ref|ZP_07694489.1| DNA primase [Streptococcus infantis SK1302]
 gi|308116064|gb|EFO53568.1| DNA primase [Streptococcus infantis SK1302]
          Length = 140

 Score = 61.1 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 55/156 (35%), Gaps = 19/156 (12%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K        EA +L  ++ HP ++   Y+   D  ++  E Q L+  L           
Sbjct: 4   TKQLTAVMRAEAHILYRMMEHP-LVLNDYRLREDFIFETPEFQTLYGLLID--------- 53

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
               +  +         ++++             E +  ++ +     +   ++  LL++
Sbjct: 54  ----NGSISSEDLAHQTREVESAWYQVLALDLPPEMSPHELAE-----VEESRKRALLNQ 104

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +  +I+K++ + +  G+ +     +  L     ++ 
Sbjct: 105 ENLQIKKKVQEASHVGDTDTALEELERLIAQKRRME 140


>gi|237741457|ref|ZP_04571938.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|229429105|gb|EEO39317.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
          Length = 354

 Score = 61.1 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/358 (12%), Positives = 98/358 (27%), Gaps = 49/358 (13%)

Query: 22  GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81
           G+Y++                   H+++ PS           CF+C  K D    +    
Sbjct: 26  GEYLELK---GIDTSKLMRCFSKEHEDRNPSMSYFAPGKICKCFACGEKYDIFKLV---- 78

Query: 82  GCSFIESVQRLAAIAGVP-LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRL 140
                          G+        K+E+    +  +    +            ++    
Sbjct: 79  -----------GEEYGIEDFKERAKKVEELYNNRELIKDANKTI---------YSKKNTF 118

Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS-Y 199
                  G   +  E   L Y      +  +         + + + G+           Y
Sbjct: 119 IELSKNEGYVENNKERKNLIYLIPRYEAYIKKCIDNLKDCDYLTKRGISKKVQEKYHIGY 178

Query: 200 DRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQ 259
           D    +  +        +  F  R + K    K     +T +F       N +       
Sbjct: 179 DPNFKKGEWKAIIIPTFLCCFTARNIDKNAKDKIRKVGDTQIF-------NLWELRE--- 228

Query: 260 KSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVL 319
                  + N +    +VEG +D LS+ + G +++       +     +    +    + 
Sbjct: 229 -------KENINKDFYIVEGEIDALSIIETGRKSLALGSIQNIQLLIKKFEEDIPKNKIY 281

Query: 320 CF-DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376
              D D  G +A  +   L+    +     N +     +DP+ ++    K   + L  
Sbjct: 282 LMLDNDKRGQKAQKELYKLLKEIGVNCISTNILWKY--KDPNEYLVKDRKGFMDSLKN 337


>gi|300727846|ref|ZP_07061226.1| putative mobilizable transposon, excision protein [Prevotella
          bryantii B14]
 gi|299774894|gb|EFI71506.1| putative mobilizable transposon, excision protein [Prevotella
          bryantii B14]
          Length = 297

 Score = 61.1 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 15/85 (17%)

Query: 1  MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTN---AVKGDYWACCPFHDEKTPSFHCND 57
          MN            I I +        +++  +        YW C P+ +E TPSF  + 
Sbjct: 1  MNISEA------KQIDIVDF------LEKKGIHYHHRKGNKYWYCSPYRNENTPSFKIDK 48

Query: 58 SKGFYYCFSCHVKGDHLSFLSALLG 82
           +  +Y +     GD +     L  
Sbjct: 49 VRNDWYDYGAGEGGDLIDLCKKLYN 73


>gi|313204054|ref|YP_004042711.1| transposoN-related/mobilization protein [Paludibacter
          propionicigenes WB4]
 gi|312443370|gb|ADQ79726.1| putative transposon-related/mobilization protein [Paludibacter
          propionicigenes WB4]
          Length = 291

 Score = 61.1 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          CPF ++  PS   +  K  ++     + G  +  +  L  CS  +++  L
Sbjct: 34 CPFREDNNPSMKVDYVKNIWFDHGTGMGGTLIDLVMKLEQCSEYDAIMAL 83


>gi|237745149|ref|ZP_04575630.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229432378|gb|EEO42590.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 354

 Score = 61.1 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 99/357 (27%), Gaps = 47/357 (13%)

Query: 22  GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81
           G+Y++                   H++K PS           CF+C  K D    +    
Sbjct: 26  GEYLELK---GIDTSKLMRCFSKEHEDKNPSMSYFVPGKICKCFACGEKYDIFKLV---- 78

Query: 82  GCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLH 141
                          G+         +++ K   +L    E+  D   +    ++     
Sbjct: 79  -----------GEEYGIE------DFKERAKKVDELYNHRELIED--ANKTIYSKKNTFI 119

Query: 142 YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS-YD 200
                 G   +  E   L Y      +  +         + + + G+           YD
Sbjct: 120 ELSKNEGYVENNKERKNLIYLIPRYEAYIKKCIDNLKDCDYLTKRGISKKVQEKYHIGYD 179

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260
               +  +        +  F  R + K    K     +T +F       N +        
Sbjct: 180 PNFKKGEWKAIIIPTFLCCFTARNIDKNAKDKIRKVGDTQIF-------NLWELRE---- 228

Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320
                 + N +    +VEG +D LS+ +   + +       +     +    +    +  
Sbjct: 229 ------KENINKDFYIVEGEIDALSIIETDRKALALGSIQNIQLLIRKFEEDIPKNKIYL 282

Query: 321 F-DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376
             D D  G +A  +   L+    +     N +     +DP+ ++    K   + L  
Sbjct: 283 MLDNDKRGQKAQKELYKLLKEIGVNCISTNILWKY--KDPNEYLVKDRKGFMDSLKN 337


>gi|15081515|ref|NP_150028.1| hypothetical protein PCP35 [Clostridium perfringens str. 13]
 gi|15076748|dbj|BAB62473.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 453

 Score = 61.1 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 8   IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
           I  L   IPI ++  +  +D  +R            C    EKT S   N  K ++Y F 
Sbjct: 103 INKLKE-IPIGDIADKLGIDTVKRGNKLW-------CNLRGEKTASCCINIDKNYFYDFG 154

Query: 67  CH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
                GD + F+S   G S  +S+ RLA + G+   
Sbjct: 155 GQPEGGDGIKFVSKAEGISAKDSIYRLADMFGIEPE 190


>gi|154483273|ref|ZP_02025721.1| hypothetical protein EUBVEN_00974 [Eubacterium ventriosum ATCC
           27560]
 gi|149735783|gb|EDM51669.1| hypothetical protein EUBVEN_00974 [Eubacterium ventriosum ATCC
           27560]
          Length = 205

 Score = 60.7 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            +YCF C   GD + F + L G    E+  RLA   GV             K        
Sbjct: 6   RFYCFGCGASGDVIDFAALLHGLGKREAAVRLAEDFGVS-YEKSGNAPPDRKRHNRSQPR 64

Query: 121 IEVATDFFHH 130
            + A   F  
Sbjct: 65  QKSAEQRFQE 74


>gi|323344122|ref|ZP_08084348.1| hypothetical protein HMPREF0663_10884 [Prevotella oralis ATCC
          33269]
 gi|323094851|gb|EFZ37426.1| hypothetical protein HMPREF0663_10884 [Prevotella oralis ATCC
          33269]
          Length = 128

 Score = 60.7 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 4/94 (4%)

Query: 1  MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
          M    + +  +    PI   + +   +   +       Y    PF  E  PSF  +  K 
Sbjct: 1  MKMKEEDLSLIK-RYPIVAYLERK-GFKPVRRTPTYAMYR--SPFRAEIHPSFKVDTQKN 56

Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA 94
           +  ++    G  +     L  C+  E++ RL  
Sbjct: 57 LWIDYAEGRGGSIIDLCMRLENCTLSEAIYRLGQ 90


>gi|163815812|ref|ZP_02207183.1| hypothetical protein COPEUT_01992 [Coprococcus eutactus ATCC 27759]
 gi|158448953|gb|EDP25948.1| hypothetical protein COPEUT_01992 [Coprococcus eutactus ATCC 27759]
          Length = 205

 Score = 60.7 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            +YCF C   GD + F + L G    E+  RLA   GV             K        
Sbjct: 6   RFYCFGCGASGDVIDFAALLHGLGKREAAVRLAEDFGVS-YEKSGNAPPDRKRHNRSQPR 64

Query: 121 IEVATDFFHH 130
            + A   F  
Sbjct: 65  QKSAEQRFQE 74


>gi|266624087|ref|ZP_06117022.1| DNA primase [Clostridium hathewayi DSM 13479]
 gi|288864083|gb|EFC96381.1| DNA primase [Clostridium hathewayi DSM 13479]
          Length = 430

 Score = 60.7 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 53/426 (12%), Positives = 100/426 (23%), Gaps = 61/426 (14%)

Query: 16  PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK-----GFYYCFSCHVK 70
            IS++     +    K       +   CPF  +     +    K       Y+CF C   
Sbjct: 3   NISDVA----NLLGIKRLTEGNSFNVVCPFCGDTRGKMNFRIVKDGELANTYHCFKCGAH 58

Query: 71  GDHLSF---LS-----ALLGCSFIESVQRLAAIAG---------------VPLPVVDPKI 107
           G+ L+    L           ++ E    L   AG               +        +
Sbjct: 59  GNMLTLYADLMGICGVDRYKIAYREIKTALHEGAGCRNSYDSSFTGTMTQIE-EEETASL 117

Query: 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167
           EK+ +I   LI ++ +              +     L +RG+ S+ IE F     P    
Sbjct: 118 EKRSQIYQRLIEMLSL-------------SETHRRKLMDRGLTSNQIEAFHFRSTPVHGT 164

Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-S 226
                   K       I    +    N   +  R    ++ P  S  G++  F  R    
Sbjct: 165 EGLARRLIKEGYSLAGIPGFYMNQNQNWDIALYRNNQGILCPAYSVSGKIEGFQIRLDAP 224

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
             +      S                       KS    +       + + EG +  +  
Sbjct: 225 HDDKKYLWLSST-------------NKKRGAGSKSPVSFIGNPFDKTVRVTEGILKPIVA 271

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
                 + + + G    +   + L  L    +          +               G 
Sbjct: 272 HALSGYSFLGTPGVNQYKSLEKALAVLKENGLEMVMEYFDMDKFMDIGCYGDYKSSTCGK 331

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
             N       +      R                   +  K   +          A  + 
Sbjct: 332 CQNKERYYGRK-ICEEKRKKRDQIRAGCCRLYESCDRLKLKCIRKTWDQREDGIWAGNDK 390

Query: 407 HLKNCI 412
            + +  
Sbjct: 391 GIDDYW 396


>gi|210616395|ref|ZP_03291080.1| hypothetical protein CLONEX_03301 [Clostridium nexile DSM 1787]
 gi|210149814|gb|EEA80823.1| hypothetical protein CLONEX_03301 [Clostridium nexile DSM 1787]
          Length = 205

 Score = 60.7 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            +YCF C   GD + F + L G    E+  RLA   GV             K        
Sbjct: 6   RFYCFGCGASGDVIDFAALLHGLGKREAAVRLAEDFGVS-YEKSGNAPPDRKRHNRSQPR 64

Query: 121 IEVATDFFHH 130
            + A   F  
Sbjct: 65  QKSAEQRFQE 74


>gi|169344608|ref|ZP_02865574.1| conserved hypothetical protein [Clostridium perfringens C str.
           JGS1495]
 gi|169297218|gb|EDS79330.1| conserved hypothetical protein [Clostridium perfringens C str.
           JGS1495]
          Length = 936

 Score = 60.7 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 8   IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
           I  L   IPI ++  +  +D  +R            C    EKT S   N  K ++Y F 
Sbjct: 586 INKLKE-IPIGDIADKLGIDTVKRGNKLW-------CNLRGEKTASCCINIDKNYFYDFG 637

Query: 67  CH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
                GD + F+S   G S  +S+ RLA + G+   
Sbjct: 638 GQPEGGDGIKFVSKAEGISAKDSIYRLADMFGIEPE 673


>gi|239947394|ref|ZP_04699147.1| conjugal transfer protein TraA [Rickettsia endosymbiont of Ixodes
            scapularis]
 gi|239921670|gb|EER21694.1| conjugal transfer protein TraA [Rickettsia endosymbiont of Ixodes
            scapularis]
          Length = 1382

 Score = 60.7 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 46/325 (14%), Positives = 91/325 (28%), Gaps = 25/325 (7%)

Query: 60   GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
            G +Y FS    GD  + +     C F+E+ + L  + G+                     
Sbjct: 894  GRWYDFSKGEGGDLFTLVQREKNCDFVEAKKYLQDMVGMSTNGGKDLAA----------- 942

Query: 120  LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
               +A D                 +          +  K     +         R     
Sbjct: 943  --NLAADKNQQIKTQTEQYAEIAKIKRAIGLYEKSDSIKYVMPNNVAKRYLSEHRGIKEV 1000

Query: 180  EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              +   +  L       ++  ++   LI  +R+  G +   GG+ +   +      S E 
Sbjct: 1001 LTRYQLSNDLRTNMXWDSNSKQYYPALIAFVRNKDGNI--TGGQAIYLNKETGAKASIEV 1058

Query: 240  ILFHKGKNL--------YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
                 G+           N    +        KD   + S+  I+ EG    LS+ +AG+
Sbjct: 1059 NKXSFGRIRGSFVEINKNNEQQNVQSRNVQSSKDGNNSVSNITIIAEGVETALSIGEAGI 1118

Query: 292  QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
            +  +              +     RI++  D D     +    I      +  G  V  +
Sbjct: 1119 KGKILCSLGVNNIRNYEPIKG--ERIIIAADNDGKDAVSVRTIIKAQDELISKGAAVAII 1176

Query: 352  LLSRGEDPDSFIRCYGKTAFEKLIV 376
                  D +  ++  G  +   L+ 
Sbjct: 1177 RPLETGDFNDVLKSQGAESIRNLLE 1201


>gi|260593586|ref|ZP_05859044.1| putative mobilizable transposon, excision protein [Prevotella
          veroralis F0319]
 gi|260534469|gb|EEX17086.1| putative mobilizable transposon, excision protein [Prevotella
          veroralis F0319]
          Length = 324

 Score = 60.3 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 5  RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           + +  +    PI   + +       +  A    Y    P  +E  PSF  +  K  +  
Sbjct: 3  EEDLSLIK-RYPIVEYLERK-GIKPVRRTAAYTLYR--SPLREETHPSFKVDTEKNLWID 58

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAA 94
          ++    G  +     + GC+  E+++RL  
Sbjct: 59 YAEGRGGSIIDLCMRMEGCTLSEAIRRLGQ 88


>gi|329954623|ref|ZP_08295683.1| toprim domain protein [Bacteroides clarus YIT 12056]
 gi|328527164|gb|EGF54168.1| toprim domain protein [Bacteroides clarus YIT 12056]
          Length = 684

 Score = 60.3 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 61/419 (14%), Positives = 110/419 (26%), Gaps = 61/419 (14%)

Query: 32  TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF--SCHVKGDHLSFLSALLGCSFIESV 89
              V  ++ A CP   +K      +   G Y+CF   C   G    F          ++V
Sbjct: 28  RRNVGKNFVAECPKCGKKH--LSISRETGLYHCFYAGCDFHGRLKDFWEER-----RDTV 80

Query: 90  QRLAAIAGVPLPVVDPKIEKKEKIQ--------------TDLIRLIEVATDFFHHSLKNA 135
           +   + AG P         K+   +                   +  +  D+    L   
Sbjct: 81  R---SDAGHPYSAGASPAAKRSFGKGEPGGMASASVGGGNAAFEVSMIPEDY--KRLSPE 135

Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSR------YSLREHLRQKGFSEEKIIEAGLL 189
              ++    DE           +   A           +    L  + F  +        
Sbjct: 136 IISKIKPLTDEPETSDPEQLAARRYLADMGISLKTAVDARIGCLMHRCFGGKDGKSGKGE 195

Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY----LNSPETILFHKG 245
            D  +   +     + + +      GQ +    R+     S         SP T      
Sbjct: 196 KDEKDEKNAVGMMYHCIAYVNY-INGQPVNVKYRSCDVSASGYTKCWSQESPTTPC---- 250

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV-----SSLGT 300
              YN       +       +   +   +I+ EG  DVL+L +AG   V+     ++   
Sbjct: 251 -PPYN-------IDCINPLRIAEENVPRLIVTEGERDVLTLHEAGYPYVISVPNGAASDL 302

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           +      R        +V+C D D PG        D           +  VL    +D  
Sbjct: 303 SKGFEAFRPWLDRVRELVICGDCDLPGRTLVKHLADYFGT-----RCLFTVLPGGCKDIS 357

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             +  YG     ++I  + P         +E             +         + D  
Sbjct: 358 DVLVMYGAGVVREIIDSACPHHTSDIITVSERADEIMNVLSGNYDHGYDVGYGPLTDHV 416


>gi|237717738|ref|ZP_04548219.1| TraP [Bacteroides sp. 2_2_4]
 gi|229452967|gb|EEO58758.1| TraP [Bacteroides sp. 2_2_4]
          Length = 288

 Score = 60.3 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I+++   IPI+  + +  Y    RR       +YW   P+ +E+T SF  N  K  ++ 
Sbjct: 2  TIEEIRD-IPIAVFLARMGYEPARRRG-----DEYWYLAPYREERTASFQLNVRKDIWHD 55

Query: 65 FSCHVKGDHLS 75
          F     GD  +
Sbjct: 56 FGTGQGGDIFT 66


>gi|226323472|ref|ZP_03798990.1| hypothetical protein COPCOM_01247 [Coprococcus comes ATCC 27758]
 gi|225208156|gb|EEG90510.1| hypothetical protein COPCOM_01247 [Coprococcus comes ATCC 27758]
          Length = 205

 Score = 60.3 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            +YCF C   GD + F + L G    E+  RLA   GV             K        
Sbjct: 6   RFYCFGCGASGDVIDFAALLHGLGKREAAVRLAEDFGVS-YEKSGNAPPDRKRHNRSQPR 64

Query: 121 IEVATDFFHH 130
            + A   F  
Sbjct: 65  QKSAEQRFKE 74


>gi|288561652|ref|YP_003429058.1| DNA primase [Bacillus pseudofirmus OF4]
 gi|288548284|gb|ADC52166.1| DNA primase [Bacillus pseudofirmus OF4]
          Length = 350

 Score = 60.3 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 48/321 (14%), Positives = 89/321 (27%), Gaps = 51/321 (15%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDW----DRRKTNAVKGDYWACCPFHD-EKTPSFHCN 56
              ++ I+++L  + I + I +         R          +   P H  E+TP  +  
Sbjct: 11  RISQETIQEVLD-VSILD-ISE--QLGHSPRRSGKQYAI---FCPSPNHGSERTPDTYIE 63

Query: 57  DSKGFYYCF----------SCHVKGDHLSFLSALLG------CSFIESVQRLAAIAGVPL 100
             K  + CF          S       +++ S            F+ SV+ +AA+ G+ L
Sbjct: 64  PYKNIFKCFGGGGCGCGGNSS------IAYYSWTENGEYDPKKHFLSSVKGVAALMGISL 117

Query: 101 PVVDPKIEKKEK---IQTDLIRLIE-------VATDFFHHSL-KNARDKRLHYYLDERGI 149
              D   EK       +T + +  E            +   L         +     RG 
Sbjct: 118 KYTDGSSEKATIAPVKRTKVYKPKETEPRDDGECDRLYRSFLSLCPIRAHHYEEWKSRGY 177

Query: 150 DSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR-----N 204
            +  I++F L   P+                +     G       SA            +
Sbjct: 178 SNEEIKLFGLRSVPNKEELQDILQSLHQQGFDLKHIPGFSQRASKSAEGLVWEWSINATD 237

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
               P+R+  GQ      R  +      + +S +         +Y            +  
Sbjct: 238 GYFIPVRNEIGQWYRMRIRRDAGKPKYIWFSSYDNSD-DTSCEVYLLRRYGASSGAPLNI 296

Query: 265 DVRRNSSSFIILVEGYMDVLS 285
            V  N      + +   D  S
Sbjct: 297 TVPTNVVQNWHVGDSIQDYFS 317


>gi|330995161|ref|ZP_08319077.1| hypothetical protein HMPREF9442_00132 [Paraprevotella xylaniphila
          YIT 11841]
 gi|329576572|gb|EGG58078.1| hypothetical protein HMPREF9442_00132 [Paraprevotella xylaniphila
          YIT 11841]
          Length = 69

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I  +   +P+++ + +  +    R        + W   P+  E+T SF  N +K  +Y F
Sbjct: 6  IDAVR-RMPLADFLARLGHEPVRRSGN-----ELWYLAPYRGERTSSFRVNVAKQLWYDF 59

Query: 66 SCHVKGDHLS 75
               GD  +
Sbjct: 60 GLGKGGDIFT 69


>gi|253570909|ref|ZP_04848317.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839858|gb|EES67941.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 288

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I+++   IPI+  + +  Y    RR       +YW   P+ +E+T SF  N  K  ++ 
Sbjct: 2  TIEEIRD-IPIAVFLARMGYEPARRRG-----DEYWYLAPYREERTASFQLNVRKDIWHD 55

Query: 65 FSCHVKGDHLS 75
          F     GD  +
Sbjct: 56 FGTGQGGDIFT 66


>gi|320352350|ref|YP_004193689.1| P4 alpha zinc-binding domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320120852|gb|ADW16398.1| P4 alpha zinc-binding domain protein [Desulfobulbus propionicus DSM
           2032]
          Length = 480

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 71/495 (14%), Positives = 133/495 (26%), Gaps = 73/495 (14%)

Query: 21  IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPS--FHCNDSKGFYYCFSCHVKGDHLSFLS 78
           I       +         +   CP       S  F      G + CF+C  KGD + +L 
Sbjct: 8   IAAKHGLRKSGN-----RHTGPCPKCGGSKDSDKFVLFTDGG-FRCFACGFKGDRIKWLR 61

Query: 79  ALLGCSFIESVQRLAA--------------IAGVPLPVVDPKIEKKEKIQ----TDLIRL 120
            + G S  E+    A                 G P+      +  +   +     +L   
Sbjct: 62  EMDGMSCREAHD--AEGKDCSPSCPNYGPCRNGEPVKRRPRSVRPQVGGRPDGLAELTAA 119

Query: 121 I------EVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
                    A      + +   R+     +L+ RGI +  ++ ++LG+        R  L
Sbjct: 120 HPGSAWSAWAGKLVEKARQALTREPEEIRWLESRGIGTAQVDQYQLGWLAHDLRVDRREL 179

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
                  ++ +                     L+ PI    G++     R          
Sbjct: 180 GLPLEEGKERLWVP----------------GGLVIPIFDGHGELHRLRIRRTPAAREKFL 223

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            +                +  +              S    ++VE  +D +++  A  + 
Sbjct: 224 SDRK--------------YVWIKGSGNLPMVLRPSGSIRGAVIVEAELDAMAVAAAHGEV 269

Query: 294 VVSSLGTALT--EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           +V +LGT     +  LR   +  P I++  D D             V        +  F 
Sbjct: 270 LVVALGTVAGGIDAGLRAELEECPVILVALDADPARDGKLGAGPAAVKRWRRSFRQARFW 329

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
            +  G+DP  F+R +G     + +   LP V                    E        
Sbjct: 330 PMPAGKDPGDFVRDHGGD-LRQWVESGLPPVVAC-----PPPICQDRSLSPEQRSPGNGG 383

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
            +      L     +A  + L+          + +G    +  R  D      R  Q + 
Sbjct: 384 GDFFPSSALPLDDIEAFAELLRTESGAVWYGRAPHGELVVRFRRDADTLDAFMRRGQITR 443

Query: 472 VKGKLSKKPSLREAA 486
           +           E  
Sbjct: 444 IMYGGGAVADFLERL 458


>gi|307566194|ref|ZP_07628646.1| conserved domain protein [Prevotella amnii CRIS 21A-A]
 gi|307345104|gb|EFN90489.1| conserved domain protein [Prevotella amnii CRIS 21A-A]
          Length = 170

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 18/117 (15%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGD-----YWACCPFHDEKTPSFHCNDSK 59
            + +  +     I          +R+  N V+       Y    P  +E  PSF  +  K
Sbjct: 3   EEDLSRIK-RYSIVEY------LERKGINPVRRTPAYALYR--SPLREETHPSFKVDTEK 53

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116
             +  ++    G  +     L  C+  E+V  L   A    P       ++EK+Q  
Sbjct: 54  NLWIDYAEGRGGSIIDLCMRLESCTLSEAVHILGRNA----PDDTAHSPQREKVQDT 106


>gi|60677309|ref|YP_209667.1| hypothetical protein PBCN09 [Clostridium perfringens]
 gi|60417944|dbj|BAD90611.1| conserved hyothetical protein [Clostridium perfringens]
          Length = 932

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 8   IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
           I  L   IPI ++  +  +D  +R            C    EKT S   N  K ++Y F 
Sbjct: 582 INKLKE-IPIGDIADKLGIDTVKRGNKLW-------CNLRGEKTASCCINIDKNYFYDFG 633

Query: 67  CH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
                GD + F+S   G S  +S+ RLA + G+   
Sbjct: 634 GQPEGGDGIKFVSKAEGISAKDSIYRLADMFGIEPE 669


>gi|255034709|ref|YP_003085330.1| DNA primase [Dyadobacter fermentans DSM 18053]
 gi|254947465|gb|ACT92165.1| DNA primase [Dyadobacter fermentans DSM 18053]
          Length = 298

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 7  FIKDLLIHIPISNLIGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           +  +     I +    Y+ +   +  N    D+W   PF +E+T SF  N     +Y  
Sbjct: 13 TLAKIKE-FDIVD----YLFELGFKPVNIRNVDHWYLSPFRNERTASFKVNRQLNRWYDH 67

Query: 66 SCHVKGDHLSFLSALLGCSFIESVQR 91
             + G+ + F      CS  E V+ 
Sbjct: 68 GIGLGGNLVDFAVTFYQCSVREVVRI 93


>gi|312878072|ref|ZP_07738008.1| zinc finger CHC2-family protein [Caldicellulosiruptor
          lactoaceticus 6A]
 gi|311795151|gb|EFR11544.1| zinc finger CHC2-family protein [Caldicellulosiruptor
          lactoaceticus 6A]
          Length = 120

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 41 ACCPFHDEKTPSFHCNDSKGFYYC-FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
          A CPFHD++  SF    S G + C   C   G+ ++FL+ + G S  E+ ++L   A
Sbjct: 36 AQCPFHDDQHNSFWFRISNGCWKCEAGCG-GGNIITFLAKIEGLSTREAYKKLLKEA 91


>gi|253565329|ref|ZP_04842784.1| DNA primase [Bacteroides sp. 3_2_5]
 gi|251945608|gb|EES86015.1| DNA primase [Bacteroides sp. 3_2_5]
          Length = 322

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL--- 80
          Y    ++         W   PF +E+ PSF  N  +  +Y FS    G+ ++    L   
Sbjct: 20 YDPVRKQG-----DSLWYKSPFRNEREPSFKVNTERNLWYDFSAGRGGNIIALAQELYAS 74

Query: 81 LGCSFIESVQRLAAIA 96
              ++  ++R+A  A
Sbjct: 75 DSLPYL--LERIAEQA 88


>gi|237724600|ref|ZP_04555081.1| DNA primase [Bacteroides sp. D4]
 gi|229437159|gb|EEO47236.1| DNA primase [Bacteroides dorei 5_1_36/D4]
          Length = 325

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 17 ISNL----IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
          I+++    I  Y+            G+ W   PF  E  PSF  N     +Y F     G
Sbjct: 3  ITDVKQIRISDYLHSLGYNPVKQQGGNLWYKSPFRQESEPSFKVNTELNLWYDFGAGKGG 62

Query: 72 DHLSFLSA 79
          + ++    
Sbjct: 63 NIIALAQE 70


>gi|300726808|ref|ZP_07060238.1| putative mobilizable transposon, excision protein [Prevotella
          bryantii B14]
 gi|299775921|gb|EFI72501.1| putative mobilizable transposon, excision protein [Prevotella
          bryantii B14]
          Length = 334

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 5  RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           + +  +     I   + +       +       Y    P   E  PSF  +  K  +  
Sbjct: 3  EEDLSAIK-RYSIVEYLERK-GIKPVRRTPAYALYR--SPLRAETHPSFKVDTEKNLWID 58

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
          ++    G  +     L GC+ +E+++RL   A
Sbjct: 59 YAEGRGGSIIDLCMRLEGCTLLEAIRRLGQNA 90


>gi|301312374|ref|ZP_07218290.1| DNA primase [Bacteroides sp. 20_3]
 gi|300829557|gb|EFK60211.1| DNA primase [Bacteroides sp. 20_3]
          Length = 291

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 76/250 (30%), Gaps = 21/250 (8%)

Query: 16  PISNL----IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
            I+++    I  Y+               W   P  +E   SF  N  +  +Y F     
Sbjct: 2   NIADVKQISIADYLHSLGYSPVKRQGNGLWYKSPLREEHEASFKVNTDRNLWYDFGAGKG 61

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130
           G+ ++    L    F +S+  L        P V P      + +T+          F H 
Sbjct: 62  GNIIALAKELY---FSDSLPYLLKRIEEQTPNVHPVSFSFPQHRTEP--------SFQHL 110

Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190
            +++     L  YL  RGI+    +         +        +    S    +   +  
Sbjct: 111 EVRDLTHPALLRYLQGRGINIELAKRECKELHFTNNGRPFFASKYSINS----LVYWVTY 166

Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH-KGKNLY 249
             +   + Y       I   +   G ++     T    +   +  +P   + +   +  Y
Sbjct: 167 VHNVVYSFYRSMIYCYINSTQRCAGSIVIDIIPTNGADKRKFFPFAPYFPVTNVIKRYFY 226

Query: 250 NFFGALNYLQ 259
            +F A+  ++
Sbjct: 227 PYFPAIIGIK 236


>gi|260495413|ref|ZP_05815539.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|260196950|gb|EEW94471.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
          Length = 354

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 101/357 (28%), Gaps = 47/357 (13%)

Query: 22  GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81
           G+Y++                   H+++ PS           CF+C  K D    +    
Sbjct: 26  GEYLELK---GIDTSKLMRCFSKEHEDRNPSMSYFAPGKICKCFACGEKYDIFKLV---- 78

Query: 82  GCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLH 141
                          G+         +++ K   +L    E+  D   +    ++     
Sbjct: 79  -----------GEEYGIE------DFKERAKKVDELYNHRELIED--ANKTIYSKKNTFI 119

Query: 142 YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS-YD 200
                 G   +  E   L Y      +  +         + + + G+           YD
Sbjct: 120 ELSKNEGYVENNKERKNLIYLIPRYEAYIKKCIDNLKDCDYLTKRGISKKVQEKYHIGYD 179

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260
               +  +        +  F  R + K    K     +T +F       N +        
Sbjct: 180 PNFKKGEWKAIIIPTFLCCFTARNIDKNAKDKIRKVGDTQIF-------NLWELRE---- 228

Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320
                 + N +    +VEG +D LS+ + G +++       +     +    +    +  
Sbjct: 229 ------KENINKDFYIVEGEIDALSIIETGRKSLALGSIQNIQLLIKKFEEDIPKNKIYL 282

Query: 321 F-DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376
             D D  G +A  +   L+    +     N +     +DP+ ++    K   + L  
Sbjct: 283 MLDNDKRGQKAQKELYKLLKEIGVNCISTNILWKY--KDPNEYLVKDRKGFMDSLKN 337


>gi|312794219|ref|YP_004027142.1| hypothetical protein Calkr_2060 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181359|gb|ADQ41529.1| hypothetical protein Calkr_2060 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 361

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/379 (14%), Positives = 110/379 (29%), Gaps = 64/379 (16%)

Query: 1   MNYPRDFIK----DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE---KTPSF 53
           M   R+ I     D+L  + +           +R            CP+ DE   +    
Sbjct: 1   MR--RELIDITMEDVLDRVRL-------TVLKQRGNELN-----CLCPYCDEPHRREGHL 46

Query: 54  HCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAI--------AGVP--LPVV 103
           + N  K  + C  C  +G+ L   + L G    E+ + LA            +   L   
Sbjct: 47  YINVVKDTFICHKCGRQGNALQLYALLTGQDTKEAYKELAQEISSGLRRLHHIQYKLQYT 106

Query: 104 DPK-----IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158
             +      E++ K+  + ++L+E++ +     L+             RG+   AI +  
Sbjct: 107 SQQKNIATPEERNKVYREFLKLLELSEEHKQDLLR-------------RGLSEIAIRVKG 153

Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218
                  +    E  R        +          ++             P+R+  GQ++
Sbjct: 154 YKTLFVGKEKRLEICRTLQEKGLSLEGIPGFFKHKSTWEWDFIPYRGYAIPVRNLNGQIV 213

Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278
               R      S     S             N                 R     + + E
Sbjct: 214 GLQVRMDEPAFSKYRWFSSANSGDVGTPAEANLH------------VTSRPDDGVVYVTE 261

Query: 279 GYMDV-LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAID 336
           G +   ++    G   +      +  +  + +L ++ P+ IVL FD D    +     ++
Sbjct: 262 GVLKADIASYLLGKTFIGLPGVGSCHKQLVEVLKQIQPKLIVLAFDMDYREKKEVAFNLE 321

Query: 337 -LVLCHLIPGNRVNFVLLS 354
            +       G +   +   
Sbjct: 322 KIKKMLAENGFKFKQITWD 340


>gi|297627280|ref|YP_003689043.1| DNA primase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296923045|emb|CBL57628.1| DNA primase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 287

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 99/295 (33%), Gaps = 37/295 (12%)

Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLNSPETILFHKG 245
           +   ++    DRFR+RL  PI    G ++ F  R            KYLN+P T ++ KG
Sbjct: 7   VKPASTGRLIDRFRDRLTLPITDQDGHILGFVARANPTIPADQAGPKYLNTPTTPIYSKG 66

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS--LCQAGVQNVVSSLGTALT 303
              Y    A                +S  ++VEG +D ++  L  AG    ++ LGT+LT
Sbjct: 67  DQFYGHPTA----------------TSTPVIVEGPLDAIAITLATAGRYTGLAPLGTSLT 110

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           + Q   L     R+VL  D D  G  AA K    +  H           L +G DP   +
Sbjct: 111 DQQAA-LLADQERVVLATDNDTAGNTAANKDHFKLAVHRTDTL---RAELPQGSDPAELL 166

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
             +G  A  + +  + P +D +     ++ + +                           
Sbjct: 167 ITHGPAALTQSLHNATPTIDRIVSYANDDAAVDLALSAIAAAH-----------PSAWQS 215

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             + + ++ +   ++           W  + R        Q+             
Sbjct: 216 GLEELSEQTKLPQEQLQARLVPLVEAWNDDPREAAAGAAPQQRGPFQRAATSARP 270


>gi|295086845|emb|CBK68368.1| DNA primase (bacterial type) [Bacteroides xylanisolvens XB1A]
          Length = 303

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 25/107 (23%)

Query: 1   MNYPRDF-IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           M       I  +   I +++ + +  +    R        + W   P+ +E+TPSF  N 
Sbjct: 1   MRRMERTDIDTMRQ-ISLADFLARLGHEPVRRSGN-----ELWYHAPYRNERTPSFRVNV 54

Query: 58  SKGFYYCFSCHVKGDHLS----------------FLSALLGCSFIES 88
           +K  +Y F     GD  +                F++  +   F+ +
Sbjct: 55  AKRLWYDFGLGKGGDIFTLAGEFARSGDFMAQAGFIAETVRMPFVSA 101


>gi|289548579|ref|YP_003473567.1| replicative DNA helicase [Thermocrinis albus DSM 14484]
 gi|289182196|gb|ADC89440.1| replicative DNA helicase [Thermocrinis albus DSM 14484]
          Length = 464

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 67/177 (37%), Gaps = 17/177 (9%)

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEE 536
                 E A+L  +I  P  +    + L +  +   + + L+S L   + E  K +    
Sbjct: 8   PHDDTAERAILGAMIKDPESIPLVLESLREEDFYVEDHRLLFSVLSKIWEEKGKDWDDIV 67

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + + L + G   LL++L   +       A   A + +  +  ++   L +   L     +
Sbjct: 68  LREYLRKAG---LLERLSMDLVYQLAEEAAEGALLEEAVRIVKEKSGLRQLLELSLNTIK 124

Query: 597 EIEK-----QIAQVTAKGEAEKTAIL----ISILHEVHIQ----IHQIESQEAMIEG 640
           EI++     +I +   +   E +          + +V  +    I++ + ++ +I G
Sbjct: 125 EIKEEPDFARIVEAITQRVYEISEKHTTTQYFHIKDVVREVLEIINRRKREDRIITG 181


>gi|307329986|ref|ZP_07609138.1| replicative DNA helicase [Streptomyces violaceusniger Tu 4113]
 gi|306884362|gb|EFN15396.1| replicative DNA helicase [Streptomyces violaceusniger Tu 4113]
          Length = 493

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 63/188 (33%), Gaps = 26/188 (13%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++  +    E ++L  ++     + +  + L    +     + ++  +   + + +   P
Sbjct: 56  RVPPQDLDAEQSVLGGMLLSKDAIADVVEVLKGNDFYRPAHETVYQAILDLYAKGEPADP 115

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L +RG      ++ R    + L +           + Y + +      R + R+
Sbjct: 116 ITVAAELTKRG------EIARVGGASYLHTLVQSVPTAANAEYYAEIVH----ERAVLRR 165

Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638
             E   +I Q+    +    E      + ++ V  Q                ++  EA+ 
Sbjct: 166 LVEAGTRITQMGYAADGDVDEIVNNAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIG 225

Query: 639 EGFGKMSG 646
              G+MSG
Sbjct: 226 SRSGQMSG 233


>gi|325269927|ref|ZP_08136537.1| DNA primase [Prevotella multiformis DSM 16608]
 gi|324987900|gb|EGC19873.1| DNA primase [Prevotella multiformis DSM 16608]
          Length = 289

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 52/137 (37%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I  +   I +++ + +  +    R        + W   P+  E+TPSF  N +K  +Y F
Sbjct: 6   IDTMRQ-ISLADFLARLGHEPVRRSGN-----ELWYRAPYRSERTPSFRVNVAKRLWYDF 59

Query: 66  SCHVKGDHLS----------------FLSALLGCSF-------------------IESV- 89
                GD  +                F++      F                   +E+V 
Sbjct: 60  GLGKGGDIFTLAGEFARSGDFMAQARFIAETARMPFVASEKPLYLPEPSEPAFEGVEAVP 119

Query: 90  -------QRLAAIAGVP 99
                  + LA   G+P
Sbjct: 120 LLRSPLTEYLAER-GIP 135


>gi|239947454|ref|ZP_04699207.1| conjugal transfer protein TraA [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921730|gb|EER21754.1| conjugal transfer protein TraA [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 687

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 95/326 (29%), Gaps = 17/326 (5%)

Query: 53  FHCNDSK-GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111
              N SK G +Y FS    GD  + +     C F+E+ + L  +  +   V +       
Sbjct: 196 MKINGSKVGIWYDFSKEEGGDLFTLVQREKNCDFVEAKKYLQDMVSISTKVDEALAVNLS 255

Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171
             +   I+                  +     +    I     +  K     +       
Sbjct: 256 TNKKRQIK-------------TQTEQESEMAKIKRAEILYEKSDSIKYSMPNNVATRYLS 302

Query: 172 HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
             R           +  L       ++  ++   LI   R+  G +       L+K  + 
Sbjct: 303 EHRGIEKILTGYQLSNDLRTNMMWDSNSKQYYPALIAFARNKDGNITGGQSIYLNKDTNN 362

Query: 232 KYLNSPETILFHKGKNLYN-FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
           K         F + +  +               KD   + S+  I+ EG    LS+ +AG
Sbjct: 363 KANIEVNKRSFGRIRGSFVEINKNNEQQNVQSSKDGNNSVSNITIIAEGVETALSIAEAG 422

Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
           ++  +              +     RI++  D D     +    I      +  G  V  
Sbjct: 423 IKGKILCSLGVSNIRNYEPIKG--ERIIIAADNDGKDAVSVNTVIKAQEELIRQGATVAI 480

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIV 376
           +      D +  ++  G  + +KLI 
Sbjct: 481 IRPPEKGDFNDMLKSQGVESIDKLIE 506


>gi|331088922|ref|ZP_08337831.1| hypothetical protein HMPREF1025_01414 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330406520|gb|EGG86028.1| hypothetical protein HMPREF1025_01414 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 341

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 122/352 (34%), Gaps = 73/352 (20%)

Query: 33  NAVKGDYWACCPFHD---EKTPSFHC----------NDSKGFYYCFSCHVKGDHLSFLSA 79
           N    D    CPFH    E  PS             +   G  +C++C    D   F++ 
Sbjct: 34  NNTGSDLMVTCPFHKGGKENKPSCGVLLKEKKVNGKSYEAGTVHCYTCGYTADLPQFVAD 93

Query: 80  LLGCSFIES-VQRLAAIAGVPLPVVDPKI---EKKEKIQTDLIRLIEVATDFFHHSLKNA 135
           +LG     +  + L           +P      + +  +   +   E   + +H +L  +
Sbjct: 94  VLGLGNSLAGYKWLVGKYNYSTAEREPLELNLYRGQAQKASYMD--EDLVERYHRALLES 151

Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195
             +    YL +R + +  +E +K+G+ P+                               
Sbjct: 152 --EVACEYLHKRKLANWVLEAYKVGFDPEDAT---------------------------- 181

Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255
                     ++FP+R   G+V+ + GR++      ++ N+ +     K   ++      
Sbjct: 182 ----------VLFPVRGLDGKVVFYKGRSIIGK---RFYNAKD---IDKSSVVFGL---- 221

Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-WKLS 314
             L      +    +   I + E  +D LSL   G +  V+ +G+ ++E Q R L     
Sbjct: 222 WELCNGRFSNGVATAEDLIWITESEIDALSLISYG-EYAVAIMGSHISEEQCRDLERSPF 280

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
            R V+  D D+ G + A +   L+          N    +  +D +  I+ Y
Sbjct: 281 RRYVIATDNDEAGRKGASQIKRLL--IPKGFRFTNLRWDTELKDINDLIKQY 330


>gi|307566283|ref|ZP_07628726.1| mobilizable transposon, excision family protein [Prevotella amnii
          CRIS 21A-A]
 gi|307345009|gb|EFN90403.1| mobilizable transposon, excision family protein [Prevotella amnii
          CRIS 21A-A]
          Length = 328

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 5  RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           + +  +    PI   + +       +       Y    P  ++  PSF  +  K  +  
Sbjct: 3  EEDLSRIK-RYPIVEYLERK-GIKPVRRIPAYALYH--SPLREDTHPSFKVDTEKNLWID 58

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
          ++    G  +     L GC+  E+++ L   A
Sbjct: 59 YAEGRGGSIIDLCMRLDGCTLSEAIRILGRNA 90


>gi|298243702|ref|ZP_06967509.1| zinc finger CHC2-family protein [Ktedonobacter racemifer DSM 44963]
 gi|297556756|gb|EFH90620.1| zinc finger CHC2-family protein [Ktedonobacter racemifer DSM 44963]
          Length = 415

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 18/91 (19%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF---HD---EKTPSFHCN-DSK 59
            I+       + ++IG+YV  DR            CCPF   H    +  PS   +  SK
Sbjct: 322 TIQQWCAQQDVMDVIGRYVALDRSG--------LGCCPFGWHHSDGKDTHPSLWVHEPSK 373

Query: 60  ---GFYYCFSCHVKGDHLSFLSALLGCSFIE 87
                +YC +    G    FL    G    E
Sbjct: 374 PGGACWYCHTWKQGGSVFDFLRLYYGVEARE 404


>gi|325958884|ref|YP_004290350.1| hypothetical protein Metbo_1134 [Methanobacterium sp. AL-21]
 gi|325330316|gb|ADZ09378.1| hypothetical protein Metbo_1134 [Methanobacterium sp. AL-21]
          Length = 360

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 43  CPFHD--EKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79
           CPFHD  +K PSF  N  KG YYC+ C  KG++  FL  
Sbjct: 321 CPFHDHEDKKPSFRVN-KKG-YYCYGCGRKGNYWDFLKK 357


>gi|329964839|ref|ZP_08301847.1| hypothetical protein HMPREF9446_03464 [Bacteroides fluxus YIT
          12057]
 gi|328524480|gb|EGF51548.1| hypothetical protein HMPREF9446_03464 [Bacteroides fluxus YIT
          12057]
          Length = 322

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 34 AVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL---LGCSFIESVQ 90
                W   PF DE+ PSF  N  +  +Y F     G+ ++    L       ++  ++
Sbjct: 25 RQGNSLWYKSPFRDEQEPSFKVNTERNLWYDFGAGKGGNIIALARELYASDSLPYL--LE 82

Query: 91 RLAAIA 96
          R+A  A
Sbjct: 83 RIAEQA 88


>gi|212692855|ref|ZP_03300983.1| hypothetical protein BACDOR_02355 [Bacteroides dorei DSM 17855]
 gi|212664644|gb|EEB25216.1| hypothetical protein BACDOR_02355 [Bacteroides dorei DSM 17855]
          Length = 321

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I+D+   IPI++ +    Y    R+         W   P  +E  PSF  N  +  +Y F
Sbjct: 3  IEDVKQ-IPIADYLHSLGYSPVKRQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56

Query: 66 SCHVKGDHL 74
               G+ +
Sbjct: 57 GAGKGGNII 65


>gi|254885010|ref|ZP_05257720.1| DNA primase [Bacteroides sp. 4_3_47FAA]
 gi|254837803|gb|EET18112.1| DNA primase [Bacteroides sp. 4_3_47FAA]
          Length = 321

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I+D+   IPI + +    Y    ++         W   P  +E  PSF  N  +  +Y F
Sbjct: 3  IEDVKQ-IPIVDYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56

Query: 66 SCHVKGDHL 74
               G+ +
Sbjct: 57 GAGKGGNII 65


>gi|239948043|ref|ZP_04699796.1| MobA/MobL family protein [Rickettsia endosymbiont of Ixodes
            scapularis]
 gi|239922319|gb|EER22343.1| MobA/MobL family protein [Rickettsia endosymbiont of Ixodes
            scapularis]
          Length = 1377

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 93/318 (29%), Gaps = 15/318 (4%)

Query: 60   GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
            G +Y FS    GD  + +     C F+E+ + L  + G+     D     K       ++
Sbjct: 894  GIWYDFSKDEGGDLFTLVQREKNCDFVEAKKYLQNMVGMSTNSKDLVTNLKLNKNKQ-VK 952

Query: 120  LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
              +    +                +          +  K     +         R     
Sbjct: 953  TNDQKEQY-----------DEIAKIKRAIGLYEKSDSVKYVMPNNVAKRYLSEHRGIKEV 1001

Query: 180  EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              +   +  L       ++  ++   LI   R++ G +       L+K  + K       
Sbjct: 1002 LTRYQLSNDLRTDMMWDSNSKQYYPALIAFARNTDGNITGGQSIYLNKDTNNKADIEVNK 1061

Query: 240  ILFHKGKNLYN-FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
              F K K  +               KD   ++S+  I+ EG    LS+ +AG++  +   
Sbjct: 1062 RSFGKIKGSFVEISKNNEQQNVQSSKDGNNSASNVTIIAEGLETALSIREAGIKGKILCS 1121

Query: 299  GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
                       +     RI++  D D     +    I      +  G  V  +      D
Sbjct: 1122 LGVSNIRNYEPIKG--ERIIIAADNDGKEAVSVNTVIKAQEELISKGAAVAIIRPLETGD 1179

Query: 359  PDSFIRCYGKTAFEKLIV 376
             +  ++  G  +   L+ 
Sbjct: 1180 FNDVLKSQGAESIRNLLE 1197


>gi|153801497|ref|ZP_01956083.1| DNA primase [Vibrio cholerae MZO-3]
 gi|124122988|gb|EAY41731.1| DNA primase [Vibrio cholerae MZO-3]
          Length = 231

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 85/264 (32%), Gaps = 42/264 (15%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCINHIKDQKL 420
           +R YGK  FE+ +  + PL   L++   E    N  + + ++ L       I+ I D  L
Sbjct: 1   MRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPLIDKIPDPFL 60

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    + + +R     Q             KK  +  ++  P + + ++ +         
Sbjct: 61  QEVLEKLLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM--------- 101

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                 ++  LI +P+  +      +        L   +S +     +  +    ++ + 
Sbjct: 102 ----RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPHITTGQLLEH 156

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             +     LL +L        +     E  +  + +   Q +          +Q E ++ 
Sbjct: 157 WRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV---------EKQIENLQA 206

Query: 601 QIAQVTAKGEAEKTAILISILHEV 624
           +      +     +      L ++
Sbjct: 207 K------ERSVGLSTEEKRELQDL 224


>gi|110666929|ref|YP_659583.1| putative deoxyribonuclease [Clostridium difficile 630]
 gi|109689089|emb|CAJ66420.1| putative enzyme, helicase family [Clostridium difficile 630]
          Length = 869

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 76/272 (27%), Gaps = 26/272 (9%)

Query: 1   MNYP-RDFIKDLLIHIPISNL----IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC 55
           M    +  I  +     I  L    IG  VD  ++            CP H  K  +F  
Sbjct: 1   MKIDIKQLIDIIKN-ANIDELYLRDIG--VDTTQKGNVP--------CPIHGGKDKNFQF 49

Query: 56  NDSKGFYYCFS--CHVKGDHLSFLSALLGCSFI-ESVQRLAAIAGVPLPVVDPKIEKKEK 112
           + +K  Y C+S  C V  D +             E++  LA    VPLP    K   K+ 
Sbjct: 50  DLNKRIYTCYSHNCVVGADIIELCRTYEHFEKPIEAILFLANKYNVPLPFTKNKTNTKKI 109

Query: 113 IQ--TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLR 170
                ++    +    F     + A          E    +   +            S+ 
Sbjct: 110 NNAPKNIYIKKKDINSFIEEKKQEAFKNNDIELAFEFECMTDKDKRKYYLDNNIKIKSML 169

Query: 171 EHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR----NRLIFPIRSSRGQVIAFGGRTLS 226
           E      +  + II+    I  +                ++    +  G+  +       
Sbjct: 170 EKQNYSSYRADSIIDVDKYISENLKGIRQAIECTTEGENVLMVAPTGSGKTYSIINTLKE 229

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYL 258
                 ++      +  +    YN  GA + +
Sbjct: 230 LDIKALFIFPNSANV-QQAIVEYNIAGAYDKI 260


>gi|281417135|ref|ZP_06248155.1| hypothetical protein Cther_1800 [Clostridium thermocellum JW20]
 gi|281408537|gb|EFB38795.1| hypothetical protein Cther_1800 [Clostridium thermocellum JW20]
          Length = 649

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 43  CPFHDEKTPSFHCN---DSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
           C  H++  PS H     D    Y CF C  KG   + + A+  C+  ++++ +  +  + 
Sbjct: 319 CVLHNDSNPSAHIITLKDGTQVYKCFGCGFKGTITTLVEAIARCTKKQAIKFIQKVYNIE 378

Query: 100 LPVVDPKIEKKEKIQTDL 117
           +   + +++ KE +Q ++
Sbjct: 379 IVESEKQVQAKELLQENI 396


>gi|297158759|gb|ADI08471.1| replicative DNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 491

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 63/188 (33%), Gaps = 26/188 (13%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++  +    E ++L  ++     + +  + L    +     + ++  +   + + +   P
Sbjct: 54  RVPPQDLDAEQSVLGGMLLSKDAIADVVEVLKGNDFYRPAHETVYQAILDLYAKGEPADP 113

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L +RG      ++ R    + L +           + Y + +      R + R+
Sbjct: 114 ITVAAELTKRG------EIARVGGASYLHTLVQSVPTAANAEYYAEIVH----ERAVLRR 163

Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638
             E   +I Q+    +    E      + ++ V  Q                ++  EA+ 
Sbjct: 164 LVEAGTRITQMGYAADGDVDEIVNNAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIG 223

Query: 639 EGFGKMSG 646
              G+MSG
Sbjct: 224 SRSGQMSG 231


>gi|254884120|ref|ZP_05256830.1| DNA primase [Bacteroides sp. 4_3_47FAA]
 gi|255013635|ref|ZP_05285761.1| DNA primase [Bacteroides sp. 2_1_7]
 gi|254836913|gb|EET17222.1| DNA primase [Bacteroides sp. 4_3_47FAA]
          Length = 295

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 18/213 (8%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I +    + I + +        R        YW   P   E TPSF  ND    +Y F 
Sbjct: 2   TIDEAK-RVRIVDFLA---QLGHRAQYMKSEQYWYLSPLRKEVTPSFKVNDRLNEWYDFG 57

Query: 67  CHVKGDHL---SFLSALLGCSFIESVQRLAAIA--GVPLPVVD---PKIEKKEKIQTDLI 118
               GD +    +L      S  E++  +      GV LP            E    +LI
Sbjct: 58  EATGGDLVELGKYLCETKSVS--EALAYI-ERHVNGVSLPKTRTLPTTFRPVEADMKNLI 114

Query: 119 RL---IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            +         + H  + ++   R+        +          G           + + 
Sbjct: 115 IVPLRHHALFSYLHSRMIDSDIGRMFCKEVHYELRQRRYFALAFGNISGGYEVRNPYYKG 174

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208
              +++  +      +  +    ++ F + L +
Sbjct: 175 CIKNKDISLILQSRGETQSRVCLFEGFMDFLSY 207


>gi|228472174|ref|ZP_04056940.1| hypothetical protein CAPGI0001_0492 [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276377|gb|EEK15101.1| hypothetical protein CAPGI0001_0492 [Capnocytophaga gingivalis ATCC
           33624]
          Length = 945

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 110/336 (32%), Gaps = 28/336 (8%)

Query: 47  DEKTPSFHCND---SKG----FYYCFS-CHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
           ++KT S H N     KG     +  F   +   + + ++     C+F E++++L +  GV
Sbjct: 46  EDKTGSCHINQKTSDKGPAPYTFTDFGVENKGMNAIDYVVKRDHCTFWEALKKLCSQYGV 105

Query: 99  PLPVVDPKIEKKE-----KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHA 153
           PLP  +      E     +      ++   ++ + +  L           L +  +    
Sbjct: 106 PLPEGNKVTPTVEFSSNVEEDEGFWKVN-FSSSYKNKKLLQRLFPFYTEELLKEYVFKEI 164

Query: 154 IEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS 213
                +G         +  +    F      +   +      A   D F ++  F    S
Sbjct: 165 ESYQTVGVNEKGNKYKKTTIANADFPIFGYDKGDYVKIYQPYAPKGDAFIHKHSFVGDKS 224

Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNY-LQKSIRKDVRRNSSS 272
             ++I    R              +       + + +   A N   +K +   +      
Sbjct: 225 GKRIIYGWDRLFE-----------KVEYETIKQVIKDLKTARNSETKKDLLAQLDALKLE 273

Query: 273 FIILVEGYMDVLSLCQAGVQNVVSSLGTA-LTEYQLRLLWKLSPRIVLCFDGDDPGLRAA 331
            +I+  G  D +++   G   +  +  T  +   +   L +++  I    D D+ G++ A
Sbjct: 274 TVIIATGGTDGINIASLGYDVIWFNSETEVINSQEYYELSQIAKNIYYIPDLDETGVKQA 333

Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
            +  D  L   +       +  S+ +D   ++R   
Sbjct: 334 VQIADSFLDIKLVWL-PKDLKYSKKKDFADWLRREK 368


>gi|282159350|gb|ADA78741.1| Replicative DNA helicase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 462

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           K   +      E A+L  ++ +   ++     L    + +   + ++  + +       F
Sbjct: 6   KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 65

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               + + L   G       L++   +A +         +   + Y   +    + R L 
Sbjct: 66  DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKNKAKLRSLQ 119

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637
               +I ++I    +K   E      S + +V  +   + +  E++
Sbjct: 120 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 165


>gi|254874947|ref|ZP_05247657.1| replicative DNA helicase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254840946|gb|EET19382.1| replicative DNA helicase [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 464

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           K   +      E A+L  ++ +   ++     L    + +   + ++  + +       F
Sbjct: 8   KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 67

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               + + L   G       L++   +A +         +   + Y   +    + R L 
Sbjct: 68  DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKNKAKLRSLQ 121

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637
               +I ++I    +K   E      S + +V  +   + +  E++
Sbjct: 122 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 167


>gi|56708144|ref|YP_170040.1| replicative DNA helicase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670615|ref|YP_667172.1| replicative DNA helicase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457240|ref|ZP_03665713.1| replicative DNA helicase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604636|emb|CAG45692.1| Replicative DNA helicase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320948|emb|CAL09075.1| Replicative DNA helicase [Francisella tularensis subsp. tularensis
           FSC198]
          Length = 465

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           K   +      E A+L  ++ +   ++     L    + +   + ++  + +       F
Sbjct: 9   KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 68

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               + + L   G       L++   +A +         +   + Y   +    + R L 
Sbjct: 69  DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKNKAKLRSLQ 122

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637
               +I ++I    +K   E      S + +V  +   + +  E++
Sbjct: 123 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 168


>gi|195536236|ref|ZP_03079243.1| replicative DNA helicase [Francisella tularensis subsp. novicida
           FTE]
 gi|194372713|gb|EDX27424.1| replicative DNA helicase [Francisella tularensis subsp. novicida
           FTE]
          Length = 462

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           K   +      E A+L  ++ +   ++     L    + +   + ++  + +       F
Sbjct: 6   KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 65

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               + + L   G       L++   +A +         +   + Y   +    + R L 
Sbjct: 66  DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 119

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637
               +I ++I    +K   E      S + +V  +   + +  E++
Sbjct: 120 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 165


>gi|332678239|gb|AEE87368.1| Replicative DNA helicase [Francisella cf. novicida Fx1]
          Length = 462

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           K   +      E A+L  ++ +   ++     L    + +   + ++  + +       F
Sbjct: 6   KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 65

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               + + L   G       L++   +A +         +   + Y   +    + R L 
Sbjct: 66  DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 119

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637
               +I ++I    +K   E      S + +V  +   + +  E++
Sbjct: 120 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 165


>gi|208779339|ref|ZP_03246685.1| replicative DNA helicase [Francisella novicida FTG]
 gi|254369340|ref|ZP_04985352.1| hypothetical protein FTAG_00310 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254372901|ref|ZP_04988390.1| replicative DNA helicase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254374355|ref|ZP_04989837.1| hypothetical protein FTDG_00522 [Francisella novicida GA99-3548]
 gi|151570628|gb|EDN36282.1| replicative DNA helicase [Francisella novicida GA99-3549]
 gi|151572075|gb|EDN37729.1| hypothetical protein FTDG_00522 [Francisella novicida GA99-3548]
 gi|157122290|gb|EDO66430.1| hypothetical protein FTAG_00310 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|208745139|gb|EDZ91437.1| replicative DNA helicase [Francisella novicida FTG]
          Length = 464

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           K   +      E A+L  ++ +   ++     L    + +   + ++  + +       F
Sbjct: 8   KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 67

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               + + L   G       L++   +A +         +   + Y   +    + R L 
Sbjct: 68  DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 121

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637
               +I ++I    +K   E      S + +V  +   + +  E++
Sbjct: 122 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 167


>gi|189502320|ref|YP_001958037.1| hypothetical protein Aasi_0948 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497761|gb|ACE06308.1| hypothetical protein Aasi_0948 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 509

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 16/204 (7%)

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
            RH D      RL+ S+    K+  +    E ++L  L+     L E    L    +   
Sbjct: 8   PRHLDSAATPSRLLPSTEPHAKMPPQAIELEQSILGALMLEKDALTEVIDILKPNSFYEE 67

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL------LKQLDRQVRDAGLWSATT 567
             Q+++  +   F          +  +L + G  E       L  L  +V  A       
Sbjct: 68  SHQEIYKAIIELFNNSAPVDLRTVVNQLRKNGKLEFVGGSYYLASLTARVSSAANIEYHA 127

Query: 568 EANIVDV--RQGYQQALALYKRFR-------LLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
            A I     RQ  Q A +++K          +L    E+   ++ +   +        L+
Sbjct: 128 RAVIEYAIKRQLIQVATSIHKHAYEDTTDVFMLLDHAEQALFEVTESNIRKNYTDMRSLL 187

Query: 619 -SILHEVHIQIHQIESQEAMIEGF 641
              + E+  +    +    +  GF
Sbjct: 188 GDAIKELEAKRGHKDGLTGIASGF 211


>gi|118497540|ref|YP_898590.1| replicative DNA helicase [Francisella tularensis subsp. novicida
           U112]
 gi|118423446|gb|ABK89836.1| replicative DNA helicase [Francisella novicida U112]
          Length = 465

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           K   +      E A+L  ++ +   ++     L    + +   + ++  + +       F
Sbjct: 9   KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 68

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               + + L   G       L++   +A +         +   + Y   +    + R L 
Sbjct: 69  DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 122

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637
               +I ++I    +K   E      S + +V  +   + +  E++
Sbjct: 123 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 168


>gi|134301957|ref|YP_001121926.1| replicative DNA helicase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049734|gb|ABO46805.1| replicative DNA helicase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 464

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           K   +      E A+L  ++ +   ++     L    + +   + ++  + +       F
Sbjct: 8   KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 67

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               + + L   G       L++   +A +         +   + Y   +    + R L 
Sbjct: 68  DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 121

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637
               +I ++I    +K   E      S + +V  +   + +  E++
Sbjct: 122 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 167


>gi|187931626|ref|YP_001891610.1| replicative DNA helicase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712535|gb|ACD30832.1| replicative DNA helicase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 465

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           K   +      E A+L  ++ +   ++     L    + +   + ++  + +       F
Sbjct: 9   KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 68

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               + + L   G       L++   +A +         +   + Y   +    + R L 
Sbjct: 69  DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 122

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637
               +I ++I    +K   E      S + +V  +   + +  E++
Sbjct: 123 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 168


>gi|167010711|ref|ZP_02275642.1| replicative DNA helicase [Francisella tularensis subsp. holarctica
           FSC200]
          Length = 462

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           K   +      E A+L  ++ +   ++     L    + +   + ++  + +       F
Sbjct: 6   KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 65

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               + + L   G       L++   +A +         +   + Y   +    + R L 
Sbjct: 66  DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 119

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637
               +I ++I    +K   E      S + +V  +   + +  E++
Sbjct: 120 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 165


>gi|89256366|ref|YP_513728.1| replicative DNA helicase [Francisella tularensis subsp. holarctica
           LVS]
 gi|89144197|emb|CAJ79466.1| Replicative DNA helicase [Francisella tularensis subsp. holarctica
           LVS]
          Length = 464

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           K   +      E A+L  ++ +   ++     L    + +   + ++  + +       F
Sbjct: 8   KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 67

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               + + L   G       L++   +A +         +   + Y   +    + R L 
Sbjct: 68  DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 121

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637
               +I ++I    +K   E      S + +V  +   + +  E++
Sbjct: 122 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 167


>gi|114765605|ref|ZP_01444706.1| hypothetical protein 1100011001288_R2601_22911 [Pelagibaca
           bermudensis HTCC2601]
 gi|114542054|gb|EAU45087.1| hypothetical protein R2601_22911 [Roseovarius sp. HTCC2601]
          Length = 372

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M    D + +    IPI  +  +  +   R        +    CP     T  F  N  K
Sbjct: 1   MR-SDDRLHEA-QAIPIDEVATRLGLTLRR----ISAVEKCGPCPACGG-TDRFSINTQK 53

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
             Y C SC   GD +  ++  LGC F +++  L   A V + 
Sbjct: 54  QVYNCRSCG-GGDGIKLVTVALGCDFPQALDFLVGAADVEID 94


>gi|302543996|ref|ZP_07296338.1| replicative DNA helicase [Streptomyces hygroscopicus ATCC 53653]
 gi|302461614|gb|EFL24707.1| replicative DNA helicase [Streptomyces himastatinicus ATCC 53653]
          Length = 495

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 63/188 (33%), Gaps = 26/188 (13%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++  +    E ++L  ++     + +  + L    +     + ++  +   + + +   P
Sbjct: 58  RVPPQDLDAEQSVLGGMLLSKDAIADVVEVLQGNDFYRPAHETVYQAILDLYAKGEPADP 117

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L +RG      ++ +    + L +           + Y + +      R + R+
Sbjct: 118 ITVAAELTKRG------EIAKVGGASYLHTLVQSVPTAANAEYYAEIVH----ERAVLRR 167

Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638
             E   +I Q+    +    E      + ++ V  Q                ++  EA+ 
Sbjct: 168 LVEAGTRITQMGYAADGDVDEIVNNAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIG 227

Query: 639 EGFGKMSG 646
              G+MSG
Sbjct: 228 SRSGQMSG 235


>gi|115314811|ref|YP_763534.1| replicative DNA helicase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|169656609|ref|YP_001428516.2| replicative DNA helicase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|254367702|ref|ZP_04983723.1| replicative DNA helicase [Francisella tularensis subsp. holarctica
           257]
 gi|290954059|ref|ZP_06558680.1| replicative DNA helicase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312552|ref|ZP_06803312.1| replicative DNA helicase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|115129710|gb|ABI82897.1| replicative DNA helicase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253513|gb|EBA52607.1| replicative DNA helicase [Francisella tularensis subsp. holarctica
           257]
 gi|164551677|gb|ABU61560.2| replicative DNA helicase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 465

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           K   +      E A+L  ++ +   ++     L    + +   + ++  + +       F
Sbjct: 9   KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 68

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               + + L   G       L++   +A +         +   + Y   +    + R L 
Sbjct: 69  DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 122

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637
               +I ++I    +K   E      S + +V  +   + +  E++
Sbjct: 123 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 168


>gi|256840378|ref|ZP_05545886.1| DNA primase [Parabacteroides sp. D13]
 gi|256737650|gb|EEU50976.1| DNA primase [Parabacteroides sp. D13]
          Length = 295

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 18/213 (8%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I +    + I + +        R        YW   P   E TPSF  ND    +Y F 
Sbjct: 2   TIDEAK-RVRIVDFLA---QLGHRAQYMKSEQYWYLSPLRKEVTPSFKVNDRLNEWYDFG 57

Query: 67  CHVKGDHL---SFLSALLGCSFIESVQRLAAIA--GVPLPVVD---PKIEKKEKIQTDLI 118
               GD +    +L      S  E++  +      GV LP            E    +LI
Sbjct: 58  EATGGDLVELGKYLCGTKSVS--EALAYI-KRYVNGVSLPRPRALPATSRPVEADMKNLI 114

Query: 119 RL---IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            +         + H  + ++   R+        +          G           + + 
Sbjct: 115 IVPLRHHALLSYLHSRMIDSDIGRMFCKEVHYELRQKRYFALAFGNISGGYEVRNPYYKG 174

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208
              +++  +      +  +    ++ F + L +
Sbjct: 175 CIKNKDISLIPQSRGEAQSRVCLFEGFMDFLSY 207


>gi|224026997|ref|ZP_03645363.1| hypothetical protein BACCOPRO_03756 [Bacteroides coprophilus DSM
           18228]
 gi|224020233|gb|EEF78231.1| hypothetical protein BACCOPRO_03756 [Bacteroides coprophilus DSM
           18228]
          Length = 295

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 18/213 (8%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I +    + I + +        R        YW   P   E TPSF  ND    +Y F 
Sbjct: 2   TIDEAK-RVRIVDFLA---QLGHRAQYMKSEQYWYLSPLRKEVTPSFKVNDRLNEWYDFG 57

Query: 67  CHVKGDHL---SFLSALLGCSFIESVQRLAAIA--GVPLPVVD---PKIEKKEKIQTDLI 118
               GD +    +L      S  E++  +      GV LP            E    +LI
Sbjct: 58  EATGGDLVELGKYLCGTKSVS--EALAYI-KRYVNGVSLPRTRALPATSRPVEADMKNLI 114

Query: 119 RL---IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            +         + H  + ++   R+        +          G           + + 
Sbjct: 115 IVPLRHHALLSYLHSRMIDSDIGRMFCKEVHYELRQRRYFALAFGNISGGYEVRNPYYKG 174

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208
              +++  +      +  +    ++ F + L +
Sbjct: 175 CIKNKDISLIPQSRGEAQSRVCLFEGFMDFLSY 207


>gi|160881113|ref|YP_001560081.1| zinc finger CHC2-family protein [Clostridium phytofermentans
          ISDg]
 gi|160429779|gb|ABX43342.1| zinc finger CHC2-family protein [Clostridium phytofermentans
          ISDg]
          Length = 166

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 11/61 (18%)

Query: 25 VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS 84
          V   RR           CC FH EK PS       G   CF C    +    +  L GC 
Sbjct: 28 VKVKRR---------MCCCIFHQEKNPSMKVFKD-GV-QCFVCGQNWNVFDVVMQLTGCD 76

Query: 85 F 85
          F
Sbjct: 77 F 77


>gi|86130634|ref|ZP_01049234.1| DNA primase [Dokdonia donghaensis MED134]
 gi|85819309|gb|EAQ40468.1| DNA primase [Dokdonia donghaensis MED134]
          Length = 291

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 4/82 (4%)

Query: 32  TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91
            +    +YW   PF  E  PSF        +Y     V G  +  +  L   +F +++  
Sbjct: 24  KSIKNSNYWYLSPFRHELRPSFKVCLRLNRWYDHGEGVGGSIIDLIMRLHKINFHDAIIA 83

Query: 92  LAAI----AGVPLPVVDPKIEK 109
           L+        V       +  K
Sbjct: 84  LSKDEFKTYNVSQKKKSTQSSK 105


>gi|53714084|ref|YP_100076.1| DNA primase [Bacteroides fragilis YCH46]
 gi|253567390|ref|ZP_04844839.1| DNA primase [Bacteroides sp. 3_2_5]
 gi|255009166|ref|ZP_05281292.1| DNA primase [Bacteroides fragilis 3_1_12]
 gi|265763635|ref|ZP_06092203.1| DNA primase [Bacteroides sp. 2_1_16]
 gi|293371338|ref|ZP_06617775.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|294645309|ref|ZP_06723025.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294808770|ref|ZP_06767503.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|313146913|ref|ZP_07809106.1| DNA primase [Bacteroides fragilis 3_1_12]
 gi|52216949|dbj|BAD49542.1| DNA primase [Bacteroides fragilis YCH46]
 gi|251943959|gb|EES84487.1| DNA primase [Bacteroides sp. 3_2_5]
 gi|263256243|gb|EEZ27589.1| DNA primase [Bacteroides sp. 2_1_16]
 gi|292633698|gb|EFF52253.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292639388|gb|EFF57690.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294444067|gb|EFG12801.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|313135680|gb|EFR53040.1| DNA primase [Bacteroides fragilis 3_1_12]
          Length = 295

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 18/213 (8%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I +    + I + +        R        YW   P   E TPSF  ND    +Y F 
Sbjct: 2   TIDEAK-RVRIVDFLA---QLGHRAQYMKSEQYWYLSPLRKEVTPSFKVNDRLNEWYDFG 57

Query: 67  CHVKGDHL---SFLSALLGCSFIESVQRLAAIA--GVPLPVVD---PKIEKKEKIQTDLI 118
               GD +    +L      S  E++  +      GV LP            E    +LI
Sbjct: 58  EATGGDLVELGKYLCGTKSVS--EALAYI-KRYVNGVSLPKTRALPATSRPVEADMKNLI 114

Query: 119 RL---IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            +         + H  + ++   R+        +          G           + + 
Sbjct: 115 IVPLRHHALLSYLHSRMIDSDIGRMFCKEVHYELRQRRYFALAFGNISGGYEVRNPYYKG 174

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208
              +++  +      +  +    ++ F + L +
Sbjct: 175 CIKNKDISLIPQSRGEAQSRVCLFEGFMDFLSY 207


>gi|312888685|ref|ZP_07748253.1| DNA primase [Mucilaginibacter paludis DSM 18603]
 gi|311298852|gb|EFQ75953.1| DNA primase [Mucilaginibacter paludis DSM 18603]
          Length = 305

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 7  FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
           + ++   + + + +   + ++  K +    DY+   P  +E   SFH N +K  ++   
Sbjct: 9  TLDEIRA-LDMVDYLA-TIGFEPAKPSRNGVDYYYLSPLRNEDDASFHVNRTKNKWFDHG 66

Query: 67 CHVKGDHLSF 76
              G+ + F
Sbjct: 67 DGKGGNLIDF 76


>gi|329965373|ref|ZP_08302297.1| hypothetical protein HMPREF9446_03914 [Bacteroides fluxus YIT
          12057]
 gi|328522165|gb|EGF49279.1| hypothetical protein HMPREF9446_03914 [Bacteroides fluxus YIT
          12057]
          Length = 286

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 10/70 (14%)

Query: 8  IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
          I+ L   +P+ +L        R           D W   P  +E+T SF  N  +  ++ 
Sbjct: 3  IEQLRQ-VPLVDL------LTRLGFAPAYRRGQDVWYRSPLREERTASFKVNTDRNVWFD 55

Query: 65 FSCHVKGDHL 74
          F     GD  
Sbjct: 56 FGLGKGGDIF 65


>gi|237719973|ref|ZP_04550454.1| DNA primase [Bacteroides sp. 2_2_4]
 gi|229450525|gb|EEO56316.1| DNA primase [Bacteroides sp. 2_2_4]
          Length = 295

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 18/213 (8%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I +    + I + +        R        YW   P   E TPSF  ND    +Y F 
Sbjct: 2   TIDEAK-RVRIVDFLA---QLGHRAQYMKSEQYWYLSPLRKEVTPSFKVNDRLNEWYDFG 57

Query: 67  CHVKGDHL---SFLSALLGCSFIESVQRLAAIA--GVPLPVVD---PKIEKKEKIQTDLI 118
               GD +    +L      S  E++  +      GV LP            E    +LI
Sbjct: 58  EATGGDLVELGKYLCGTKSVS--EALAYI-KRYVNGVSLPKTRALPATSRPVEADMKNLI 114

Query: 119 RL---IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            +         + H  + ++   R+        +          G           + + 
Sbjct: 115 IVPLRHHALLSYLHSRMIDSDIGRMFCKEVHYELRQRRYFALAFGNISGGYEVRNPYYKG 174

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208
              +++  +      +  +    ++ F + L +
Sbjct: 175 CIKNKDISLIPQSRGEAQSRVCLFEGFMDFLSY 207


>gi|327198271|ref|YP_004306846.1| gp2 [Burkholderia phage KS14]
 gi|310657234|gb|ADP02347.1| gp2 [Burkholderia phage KS14]
          Length = 923

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 8/117 (6%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND---SKGF-YY 63
           I +L   + +  L  +     ++     K +Y    P   +K PS         KG  + 
Sbjct: 4   ITELKRRVDLHELADRLGI--KKGKGGEKANYH--SPHTTDKVPSLSIFPALPEKGEGWK 59

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
             S    G  +  +  + GC   E+++ L    G+P   +D   E+           
Sbjct: 60  DHSTGKGGSCIDLVMYVQGCDVSEAMRYLHEAFGIPFDTIDKPAEQTRTKTAIDYIA 116


>gi|240047300|ref|YP_002960688.1| Replicative DNA helicase [Mycoplasma conjunctivae HRC/581]
 gi|239984872|emb|CAT04865.1| Replicative DNA helicase [Mycoplasma conjunctivae]
          Length = 452

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 1/115 (0%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  +L   +  P  +      L++  + + +L  ++  +         F  E + + L  
Sbjct: 12  ERVILTYFLRRPDKVHRYINLLSEEDFSDKQLSIIFLAIKELMNNNGSFSVELLIEHLRS 71

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            G  EL+  L   + +        +  I    +   +  AL    +LL    + I
Sbjct: 72  YGKLELIGGL-PTIANLSESFLVFDNTIEQYIKIVTEKTALRNLKKLLEESLKNI 125


>gi|332184102|gb|AEE26356.1| Replicative DNA helicase [Francisella cf. novicida 3523]
          Length = 464

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           K   +      E A+L  ++ +   ++     L    + +   + ++  + +       F
Sbjct: 8   KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYRQIVTLNQANTPF 67

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               + + L   G       L+    +A +    T    +   + Y   +    + R L 
Sbjct: 68  DVLILSEYLATEGL------LEEAGGEAYIIDLATNTPSISNIKTYANIVKDKAKLRSLQ 121

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637
               +I ++I    +K   E      S + +V  +   + +  E++
Sbjct: 122 ASVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 167


>gi|293370333|ref|ZP_06616890.1| mobilizable transposon, excision family protein [Bacteroides
          ovatus SD CMC 3f]
 gi|292634628|gb|EFF53160.1| mobilizable transposon, excision family protein [Bacteroides
          ovatus SD CMC 3f]
          Length = 288

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I+++   IPI+  + +  Y    RR       +YW   P+ +E+T SF  N  K  ++ 
Sbjct: 2  TIEEIRD-IPIAVFLARMGYEPARRRG-----DEYWYPAPYREERTASFQLNVRKDIWHD 55

Query: 65 FSCHVKGDHLS 75
          F     GD  +
Sbjct: 56 FGTGQGGDIFT 66


>gi|297200907|ref|ZP_06918304.1| replicative DNA helicase [Streptomyces sviceus ATCC 29083]
 gi|197716405|gb|EDY60439.1| replicative DNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 492

 Score = 58.4 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 64/188 (34%), Gaps = 26/188 (13%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++  +    E ++L  ++     + +  + +    +     + ++  +   + + +   P
Sbjct: 55  RVPPQDLDAEQSVLGGMLLSKDAIADVVEVIKGHDFYKPAHETIFQAILDVYAKGEPADP 114

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I   L +RG      ++++    + L +           + Y + +      R + R+
Sbjct: 115 ITIAAELTKRG------EINKVGGASYLHTLVQTVPTAANAEYYAEIVH----ERAVLRR 164

Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638
             E   +I Q+    +    E      + ++ V  Q                ++  EA+ 
Sbjct: 165 LVEAGTRITQMGYAADDDVDEIVNRAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIG 224

Query: 639 EGFGKMSG 646
              G+M+G
Sbjct: 225 SRSGEMTG 232


>gi|167465250|ref|ZP_02330339.1| DNA primase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 316

 Score = 58.4 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 101/375 (26%), Gaps = 83/375 (22%)

Query: 19  NLIGQYVDWDRRKTNAVKGDYWACCPF-HDEKTPSFHC-----NDSKGFYYCFSCH---- 68
           +++ +   +D R        + A  PF  D+ TPSF       +D  G ++ F       
Sbjct: 4   DVLYELEQFDWRNVRPAADSFIASSPFRTDDDTPSFFVDLREDSDYYGCWHDFG-GTDPE 62

Query: 69  -VKGD---HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
              G+    LSFL      S+ E+   L           D + E     +  L      A
Sbjct: 63  WTSGNFTKLLSFLMD---VSYREADDYLRRKY-----ENDEQQETPVLRRVRL-----SA 109

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
                 +L     K+  +                                          
Sbjct: 110 ERPKKPALNAELLKQYRH-----------------------------------DHPYLPS 134

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
                       T Y   +N +  P     GQ++    R++   +               
Sbjct: 135 RCISAEVQREMQTGYCPRKNAVTIPWFGPNGQLLNIKYRSVFGKKFWYAKGGR-----PI 189

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            + +Y                + R+      +VE  +D L+L  AGV  V +  G    E
Sbjct: 190 KELVYGID------------YIYRHRCRRAAIVEAEIDALTLMSAGVPAVAAGGGVINEE 237

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
               ++      I +  D DD G     + I ++   L  G     +     +D +   +
Sbjct: 238 KAAVIIRSPIEEIFVMADHDDVGQALKREVIRMLGGDLRVGVGGFPIRY---KDVNEAAQ 294

Query: 365 CYGKTAFEKLIVESL 379
             G     +      
Sbjct: 295 AEGLRKLREYFERRK 309


>gi|288927993|ref|ZP_06421840.1| mobilizable transposon, excision protein [Prevotella sp. oral
          taxon 317 str. F0108]
 gi|288330827|gb|EFC69411.1| mobilizable transposon, excision protein [Prevotella sp. oral
          taxon 317 str. F0108]
          Length = 320

 Score = 58.4 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 27 WDRRK-----TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81
           +R+             Y    P  +E  PSF  +  K  +  ++    G  +     L 
Sbjct: 4  LERKGIKPVRRTPSYALYR--SPLREETHPSFKVDTEKNLWIDYAEGRGGSIIDLFMRLE 61

Query: 82 GCSFIESVQRLAAIA 96
           C+  E+++RL   A
Sbjct: 62 NCTLSEAIRRLGQTA 76


>gi|270296179|ref|ZP_06202379.1| DNA primase [Bacteroides sp. D20]
 gi|270273583|gb|EFA19445.1| DNA primase [Bacteroides sp. D20]
          Length = 322

 Score = 58.4 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 21 IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79
          I +Y+            G  W   PF DE  PSF  N  +  +Y F     G+ ++    
Sbjct: 11 IEEYLHSLGYSPARQQGGSLWYKSPFRDECEPSFKVNTERNLWYDFGAGRGGNIIALAQE 70

Query: 80 L---LGCSFIESVQRLAAIA 96
          L       ++  ++R+A  A
Sbjct: 71 LYASDSLPYL--LERIAEQA 88


>gi|51247081|ref|YP_066963.1| related to DNA primase PrmN1 (partial length) [Desulfotalea
          psychrophila LSv54]
 gi|50878118|emb|CAG37855.1| related to DNA primase PrmN1 (partial length) [Desulfotalea
          psychrophila LSv54]
          Length = 88

 Score = 58.4 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
              PF +EKTPSF  +  K  ++       G+ L F+     CS  +++  L
Sbjct: 33 KYFSPFREEKTPSFDYSPLKNAWFDHGTGEGGNTLDFIIGFQKCSVSQALNFL 85


>gi|119943979|ref|YP_941659.1| replicative DNA helicase DnaB [Psychromonas ingrahamii 37]
 gi|119862583|gb|ABM02060.1| primary replicative DNA helicase [Psychromonas ingrahamii 37]
          Length = 466

 Score = 58.4 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 51/159 (32%), Gaps = 10/159 (6%)

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
           K P  +         K        E A++  L+ +     +  + + +  + +   ++++
Sbjct: 4   KPPFSQQKPKINTPIKTVPHSFEAEQAIIGGLLLNNEAWNDVAERVVERDFYHRAHRQIF 63

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
           + +     E        + + L  +      K+L+     A L               Y 
Sbjct: 64  AMIERLSSEDIPVDLVTLSEHLENK------KELEGVGGIAYLAELLQNTPSAANINNYS 117

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
             +    R R + R+   +  +IA+   + E   +  L+
Sbjct: 118 DIV----RERAIVRELIGVANEIAEAGYETEGRDSNELL 152


>gi|319641586|ref|ZP_07996273.1| hypothetical protein HMPREF9011_01871 [Bacteroides sp. 3_1_40A]
 gi|317386786|gb|EFV67678.1| hypothetical protein HMPREF9011_01871 [Bacteroides sp. 3_1_40A]
          Length = 295

 Score = 58.4 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 84/252 (33%), Gaps = 12/252 (4%)

Query: 33  NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF---LSALLGCSFIESV 89
           N     YW   P  +E+TPSF  ND+   +Y F     GD +     L      S +  +
Sbjct: 24  NTRGCQYWYLSPLREERTPSFKVNDNLNEWYDFGLSAGGDIIELGKHLYRTGNVSVV--L 81

Query: 90  QRLAAIA-GVPLPVVDPKIEKKEKIQTDL--IRLIEVATDFFHHSLKNARDKRLHYYLDE 146
            R++  A GVP   +  +  +   I+ ++  + + E++       L++         L  
Sbjct: 82  LRISENAIGVPFQQLQSRSVRPGPIEEEMENVEVRELSHHALLSYLRSRYISENIGRLYC 141

Query: 147 RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDG----DNSATSYDRF 202
           + I     +      A +++    E          K+ +  ++        N    ++ F
Sbjct: 142 KEIHYELRKRHYFAIAFENKTGGYEVRNPYYKGCIKVKDISVIRYNKDIIQNHVCVFEGF 201

Query: 203 RNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSI 262
            + L +     +G       R           N  + ++  +   + + +   +   +  
Sbjct: 202 MDFLSYQELHRKGDYHVCIDRPTDFLVMNSVSNLKKCLVELERYTVIHCYLDNDLAGRKT 261

Query: 263 RKDVRRNSSSFI 274
            + +     + +
Sbjct: 262 VETIAGLCGNRV 273


>gi|152990087|ref|YP_001355809.1| replicative DNA helicase [Nitratiruptor sp. SB155-2]
 gi|151421948|dbj|BAF69452.1| replicative DNA helicase DnaB [Nitratiruptor sp. SB155-2]
          Length = 471

 Score = 58.4 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 60/158 (37%), Gaps = 8/158 (5%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC- 542
           E ++L +++  PAI ++    L    + +   + L++ +     E +    E + ++L  
Sbjct: 11  ERSVLSSILFDPAIFEDVAARLTPNDFYHPFHKNLFAAMEELAREDQPIDEEFLKEKLEL 70

Query: 543 --ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-----LLSRQK 595
             +      L+ L      A + +   E     V++         K+        +    
Sbjct: 71  KKQFDEAAFLEVLAANPLSANVSAYVEEIKEKAVKRDLVHLTTEIKKITVEQDLPVEDVI 130

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +EI+ ++ ++T +  ++       ++ +    + +++ 
Sbjct: 131 DEIQSKLYKITTQTSSQDFKDSTQVMKDTLQHLLKMKE 168


>gi|294785930|ref|ZP_06751218.1| toprim domain-containing protein [Fusobacterium sp. 3_1_27]
 gi|294487644|gb|EFG35006.1| toprim domain-containing protein [Fusobacterium sp. 3_1_27]
          Length = 354

 Score = 58.4 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 57/184 (30%), Gaps = 31/184 (16%)

Query: 22  GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81
           G+Y++                   H++K PS           CF+C  K D    +    
Sbjct: 26  GEYLELK---GIDTSKLMRCFSKEHEDKNPSMSYFAPGKICKCFACGEKYDIFKLVGEEY 82

Query: 82  GC-SFIESVQRLAAIAG-------------------VPLPVVDPKIEKKEKIQTDLIRL- 120
           G   F E  +++  +                     + L   +  +E  ++ +  +  + 
Sbjct: 83  GIEDFKEKAKKVDELYNHRELIEDANKTIYSKKNTFIELSKNEGDVENNKERKNLIYLIP 142

Query: 121 -IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179
             E        +LK+        YL +RGI     E + +GY P+ +    + +    F 
Sbjct: 143 RYERYIKRCMDNLKD------CDYLTKRGISKEVQEKYHIGYDPNFKKGEWKAIIIPTFL 196

Query: 180 EEKI 183
               
Sbjct: 197 CCFT 200


>gi|304382850|ref|ZP_07365333.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304336035|gb|EFM02282.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 310

 Score = 58.4 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 8  IKDLLIHIPISNLIGQYV--DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          ++++   IPI++ +  Y      +  + A+        P+ ++   S   + ++  +Y F
Sbjct: 8  LQNIKN-IPIADYLHAYGMQPVKKYGSYALYNA-----PYREDHNASMKVDFARNLWYDF 61

Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
               G  +  +  L GC   E++  LA  A
Sbjct: 62 GLGKGGSIIDLVMLLQGCDAHEAMTHLAGNA 92


>gi|298528849|ref|ZP_07016252.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
          ASO3-1]
 gi|298529856|ref|ZP_07017258.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
          ASO3-1]
 gi|298529883|ref|ZP_07017285.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
          ASO3-1]
 gi|298531204|ref|ZP_07018604.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
          ASO3-1]
 gi|298531270|ref|ZP_07018670.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
          ASO3-1]
 gi|298531277|ref|ZP_07018677.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
          ASO3-1]
 gi|298508814|gb|EFI32720.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
          ASO3-1]
 gi|298508880|gb|EFI32786.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
          ASO3-1]
 gi|298508887|gb|EFI32793.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
          ASO3-1]
 gi|298509230|gb|EFI33134.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
          ASO3-1]
 gi|298509257|gb|EFI33161.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
          ASO3-1]
 gi|298510285|gb|EFI34188.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
          ASO3-1]
          Length = 98

 Score = 58.4 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 9/96 (9%)

Query: 2  NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSF--HCNDSK 59
           Y R+ ++ L   + ++++I   V      +    G     CP   E    F   CN   
Sbjct: 4  RYSREELQRLRNKVLVNDVI---VHILDMPSKVRDGYLRFLCPLCSE----FLTACNPRT 56

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAI 95
              CF C    + +  +  + G +F E+V+ L  +
Sbjct: 57 NLARCFRCERNFNPIDLVMVVKGLNFREAVEFLQDM 92


>gi|329938671|ref|ZP_08288067.1| replicative DNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329302162|gb|EGG46054.1| replicative DNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 492

 Score = 58.4 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 63/226 (27%), Gaps = 26/226 (11%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
              +      G         +  +G             ++  +    E ++L  ++    
Sbjct: 17  SDRLPASRRRGEGGGPARDEQHDRGRDGGAWDGGSAFERVPPQDLDAEQSVLGGMLLSKE 76

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            + +  + L    +     + ++  +   +   +   P  I   L +RG    + ++   
Sbjct: 77  AIADVVEILKGHDFYKPAHETIYQAILDVYARGEPSDPITIAAELTKRG---EITKVGGA 133

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEK 613
                L      A   +               R + R+  E   +I Q+    +    E 
Sbjct: 134 AYLHALVQTVPTAANAEYYAEIVHE-------RAVLRRLVEAGTRITQMGYAADDDVDEI 186

Query: 614 TAILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646
                + ++ V  Q                ++  EA+    G+M+G
Sbjct: 187 VNRAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 232


>gi|300866564|ref|ZP_07111253.1| hypothetical protein OSCI_3010017 [Oscillatoria sp. PCC 6506]
 gi|300335428|emb|CBN56413.1| hypothetical protein OSCI_3010017 [Oscillatoria sp. PCC 6506]
          Length = 1319

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/350 (13%), Positives = 99/350 (28%), Gaps = 57/350 (16%)

Query: 33  NAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHLSFLS-------AL-LGC 83
                 +    PF + K+  SF    S   +Y       G+ +S++            G 
Sbjct: 46  QISSDRWRGGSPFRESKSGTSFAVWPSTLRFYDSGMGFAGNPISYVHSLKVGRWEHPKGK 105

Query: 84  SFIESVQRLAAIAG----VPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKR 139
            ++E+++ L+ +AG     P      +  ++ +   +   +           L +     
Sbjct: 106 DWVEALRALSHLAGAFDNFPTREPSREQIERAQKWEERRSIFSAVYITCAQHLWSDLGSD 165

Query: 140 LHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS 198
              + ++ERG     +     G  P           Q+           L          
Sbjct: 166 ALNHLIEERGFTESELRDLGAGLYPTLEIVQGAITEQQFNISLAEQCGVLTRK------- 218

Query: 199 YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP---ETILFHKGKNLYNFFGAL 255
              +   ++FP  +  G+ +   G   +    +    +    +       +       A 
Sbjct: 219 ---WEGYVVFPWHNPYGEPLTLYGHWPASKGDIPLKKNHVGWKKEHDTARRAWNKLSEAQ 275

Query: 256 NY--------LQKSIRKDVRRNSSS---------------------FIILVEGYMDVLSL 286
                     + K       ++ S                        +LVEG  D    
Sbjct: 276 KVAQPWTDAQIPKKYACWNPKDESGSWLATKESPLYFDKVVKANHHEAVLVEGVTDAAIA 335

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLS-PRIVLCFDGDDPGLRAAYKAI 335
              G   V++ +  +L+  Q++ L +    R+ +C D D  G +     I
Sbjct: 336 QVKGDSRVMACVAASLSGEQVQTLKRHRVQRVNVCLDPDSAGEKGIISCI 385


>gi|325855559|ref|ZP_08171870.1| hypothetical protein HMPREF9303_1233 [Prevotella denticola CRIS
          18C-A]
 gi|325483773|gb|EGC86733.1| hypothetical protein HMPREF9303_1233 [Prevotella denticola CRIS
          18C-A]
          Length = 328

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 5  RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           + +  +    PI   + +       +       Y    P  ++  PSF  +  K  +  
Sbjct: 3  EEDLSRIK-RYPIVEYLERK-GIKPVRRTPAYALYR--SPLREDTHPSFKVDTEKNLWID 58

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
          ++    G  +     L GC+  E+++ L   A
Sbjct: 59 YAEGRGGSIIDLCMWLEGCTLSEAIRLLGRNA 90


>gi|304381998|ref|ZP_07364552.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304336833|gb|EFM03055.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 310

 Score = 58.0 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/383 (13%), Positives = 96/383 (25%), Gaps = 80/383 (20%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + +  +     I   +    D    +       Y    P  +E  PSF  +  K 
Sbjct: 1   MK--EEDLSAIK-RYSIVEYLESK-DIKPVRKTPTYAMYH--SPLREETHPSFKVDTEKN 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            +  ++    G  +     L GC+  E++ RL            P               
Sbjct: 55  LWIDYAEGRGGSIIDLCMRLEGCTLSEAICRL--------EQNTPDNT------------ 94

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
                                         S++     +  +P+ R ++     ++  S 
Sbjct: 95  ----------------------------THSYSFTNRGISISPNQRENVTASGTRRLISI 126

Query: 181 EKIIEAGLL-IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239
              +   L          + ++    L       RG+     G   S G      N    
Sbjct: 127 SDTLSPHLQEYFKKERCINLEKATPFLKCISYEVRGRRYEAIGFANSSGGYELRDN---- 182

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
                             +       +  +    + L EG+MD LS      +     L 
Sbjct: 183 ------------NTFKGTIAPKGITPIFEDMEQPVCLFEGFMDFLSFLSMKEKVTNQCLV 230

Query: 300 TALTEYQLRLLWKLSPRIVL----CFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
                   R +  L+ R +       D DD G +A  + ++              V    
Sbjct: 231 MNSVSNVARSIRYLNERSITSIRAFLDNDDAGRKAVQEFVNTGFK-----VEDMAVYYRD 285

Query: 356 GEDPDSFIRCYGKTAFEKLIVES 378
            +D + F     +   +KL    
Sbjct: 286 FKDLNDFHTSRVREQQKKLEKTP 308


>gi|302381202|ref|YP_003817025.1| zinc finger CHC2-family protein [Brevundimonas subvibrioides ATCC
          15264]
 gi|302191830|gb|ADK99401.1| zinc finger CHC2-family protein [Brevundimonas subvibrioides ATCC
          15264]
          Length = 402

 Score = 58.0 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 1  MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE---KTPS--FHC 55
          M+  R   +D    + I +L+   V   R  +      +   CP       K+P+  F  
Sbjct: 1  MS-DRKLFEDARSRVEIQDLVKDLVV--RAGSQ-----WRGQCPLCKASKAKSPTGQFAI 52

Query: 56 NDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
             KG + CF+C   GD +     L G + +E+  RL
Sbjct: 53 KPDKGTWRCFACGQFGDVVDLERELSGGTAVEAAHRL 89


>gi|224367766|ref|YP_002601929.1| DnaG1 [Desulfobacterium autotrophicum HRM2]
 gi|224367854|ref|YP_002602017.1| DnaG2 [Desulfobacterium autotrophicum HRM2]
 gi|224367915|ref|YP_002602078.1| DnaG3 [Desulfobacterium autotrophicum HRM2]
 gi|224368064|ref|YP_002602227.1| DnaG4 [Desulfobacterium autotrophicum HRM2]
 gi|224369170|ref|YP_002603334.1| DnaG10 [Desulfobacterium autotrophicum HRM2]
 gi|224369480|ref|YP_002603644.1| DnaG7 [Desulfobacterium autotrophicum HRM2]
 gi|224370510|ref|YP_002604674.1| DnaG5 [Desulfobacterium autotrophicum HRM2]
 gi|223690482|gb|ACN13765.1| DnaG1 [Desulfobacterium autotrophicum HRM2]
 gi|223690570|gb|ACN13853.1| DnaG2 [Desulfobacterium autotrophicum HRM2]
 gi|223690631|gb|ACN13914.1| DnaG3 [Desulfobacterium autotrophicum HRM2]
 gi|223690780|gb|ACN14063.1| DnaG4 [Desulfobacterium autotrophicum HRM2]
 gi|223691887|gb|ACN15170.1| DnaG10 [Desulfobacterium autotrophicum HRM2]
 gi|223692197|gb|ACN15480.1| DnaG7 [Desulfobacterium autotrophicum HRM2]
 gi|223693227|gb|ACN16510.1| DnaG5 [Desulfobacterium autotrophicum HRM2]
          Length = 123

 Score = 58.0 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFH--CNDSK 59
            +    + +L   IP+  LI + ++     +   +G +   CP  +E    F    N + 
Sbjct: 4   KFSSQELFELRNFIPVEMLIREQLEM---PSKISEGFFRFLCPICNE----FQTAINPAT 56

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK 109
               CF C    + +  +  +    F ESV  L     V +P  +    +
Sbjct: 57  NLARCFRCEKNFNTIDLVMTVQRIGFKESVLFL-KRLMVKVPNQNKDARQ 105


>gi|253572863|ref|ZP_04850262.1| TraP [Bacteroides sp. 1_1_6]
 gi|251837595|gb|EES65687.1| TraP [Bacteroides sp. 1_1_6]
          Length = 292

 Score = 58.0 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 23/93 (24%)

Query: 14 HIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
           I +++ + +  +    R        + W   P+ +E+TPSF  N +K  +Y F     G
Sbjct: 3  QISLADFLARLGHEPVRRSGN-----ELWYHAPYRNERTPSFRVNVAKRLWYDFGLGKGG 57

Query: 72 DHLS----------------FLSALLGCSFIES 88
          D  +                F++  +   F+ +
Sbjct: 58 DIFTLAGEFARSGDFMAQAGFIAETVRMPFVSA 90


>gi|225848306|ref|YP_002728469.1| replicative DNA helicase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644399|gb|ACN99449.1| replicative DNA helicase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 467

 Score = 58.0 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 74/180 (41%), Gaps = 14/180 (7%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             +     + E A+L +L+ +P I+     +L    + N   +++++ + + F + K   
Sbjct: 7   SPVLPYDEVTERAVLGSLLVYPEIVDIVVTKLKPYDFFNQRHREVFNAIVALFNDSKPIE 66

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-----ANIVDVRQGYQQALALYKRF 588
           P  + + L ++G  +L+  L   + +  L +   E      +I+  +   +  +   ++ 
Sbjct: 67  PILVKEYLEKKGTLDLVGGL-HFLTELALEAVPPETVYQLIDILKEKSTLRSLIESAQKI 125

Query: 589 --------RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
                     ++   EE E  I QVT   E      L  +L E    I+++  +E ++ G
Sbjct: 126 ITKAKSPSTDINTLLEEAESIIFQVTESKETIYYYSLGEVLKETLRIINELAKKETVVTG 185


>gi|270293797|ref|ZP_06199999.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275264|gb|EFA21124.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 295

 Score = 58.0 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75
          N     YW   P  +E+TPSF  ND+   +Y F     GD + 
Sbjct: 24 NVKGYQYWYLSPLREERTPSFKVNDNLNEWYDFGLSAGGDIID 66


>gi|303236909|ref|ZP_07323488.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|302483077|gb|EFL46093.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
          Length = 330

 Score = 58.0 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 4/92 (4%)

Query: 5  RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           + +  +     I   + +       +       Y    P  +E  PSF  +  K  +  
Sbjct: 3  EEDLSLIK-RYSIVEYLERK-GIKPVRRTPSYALYR--SPLREETHPSFKVDTQKNLWID 58

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
          ++    G  +     +   +  E+++RL   A
Sbjct: 59 YAEGRGGSIIDLCMRMESSTLSEAIRRLGQNA 90


>gi|288926544|ref|ZP_06420462.1| mobilizable transposon, excision protein [Prevotella buccae D17]
 gi|288336686|gb|EFC75054.1| mobilizable transposon, excision protein [Prevotella buccae D17]
          Length = 326

 Score = 58.0 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 6/94 (6%)

Query: 1  MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
          M    + +  +    PI   + +       +       Y    P  DE  PSF  +  K 
Sbjct: 1  MK--EEDLSLIK-RYPIVAYLERK-GIKPVRRTPTYALYR--SPLRDETHPSFKVDTEKN 54

Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA 94
           +  ++    G  +     L   +  E++ RL  
Sbjct: 55 LWIDYAEGRGGSIIDLCMRLENYTLSEAICRLGQ 88


>gi|21222318|ref|NP_628097.1| replicative DNA helicase [Streptomyces coelicolor A3(2)]
 gi|256786582|ref|ZP_05525013.1| replicative DNA helicase [Streptomyces lividans TK24]
 gi|289770473|ref|ZP_06529851.1| replicative DNA helicase [Streptomyces lividans TK24]
 gi|4808407|emb|CAB42739.1| putative replicative DNA helicase [Streptomyces coelicolor A3(2)]
 gi|289700672|gb|EFD68101.1| replicative DNA helicase [Streptomyces lividans TK24]
          Length = 491

 Score = 58.0 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/206 (12%), Positives = 68/206 (33%), Gaps = 26/206 (12%)

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
           + ++GP            ++  +    E ++L  ++     + +  + L    +     +
Sbjct: 36  QHERGPDSGWDGGGAAFERVPPQDLDAEQSVLGGMLLSKDAIADVVEILKGHDFYKPAHE 95

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            ++  +   + + +   P  I   L +RG      ++++    + L +            
Sbjct: 96  TVYQAILDVYAKGEPADPITIAAELTKRG------EINKVGGASYLHTLVQTVPTAANAA 149

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI----- 628
            Y + +      R + R+  E   +I Q+    +    E      + ++ V  Q      
Sbjct: 150 YYAEIVH----ERAVLRRLVEAGTRITQMGYAADDDVDEIVNRAQAEIYAVTEQRTSEDY 205

Query: 629 --------HQIESQEAMIEGFGKMSG 646
                     ++  EA+    G+M+G
Sbjct: 206 LPLGDIMEGALDEIEAIGSRSGEMTG 231


>gi|19068107|gb|AAL29918.1| DNA primase [Bacteroides fragilis]
          Length = 321

 Score = 58.0 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I+D+   IPI++ +    Y    ++         W   P  +E  PSF  N  +  +Y F
Sbjct: 3  IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56

Query: 66 SCHVKGDHL 74
               G+ +
Sbjct: 57 GAGKGGNII 65


>gi|282878638|ref|ZP_06287408.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
 gi|281299237|gb|EFA91636.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
          Length = 376

 Score = 58.0 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           ++ +  +    PI   + +       +   V   Y    P   E  PSF  +  K  +  
Sbjct: 45  KEDLSRIK-RYPIVEYLERK-GIKPVRRTPVYALYR--SPLRAETHPSFKVDTEKNLWID 100

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
           ++    G  +     L  C+  E++ RL   A
Sbjct: 101 YAEGRGGSIIDLCMRLESCTLSEAIHRLGQNA 132


>gi|290959035|ref|YP_003490217.1| replicative DNA helicase [Streptomyces scabiei 87.22]
 gi|260648561|emb|CBG71672.1| putative replicative DNA helicase [Streptomyces scabiei 87.22]
          Length = 486

 Score = 58.0 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 70/230 (30%), Gaps = 30/230 (13%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
            +L         G     +++ R RD             V  +        E ++L  ++
Sbjct: 12  DRLPPSRRRPDDGGRGREERHDRGRDNGEWDGGGSAFERVPPQDLD----AEQSVLGGML 67

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                + +  + L    +     + ++  +   + + +   P  I   L +RG      +
Sbjct: 68  LSKDAIADVVEILKGPDFYKPAHETIYQAILDIYAKGEPADPITIAAELTKRG------E 121

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE-- 610
           + +    + L +           + Y + +      R + R+  E   +I Q+    +  
Sbjct: 122 ITKVGGASYLHTLVQTVPTAANAEYYAEIVH----ERAVLRRLVEAGTRITQMGYAADDD 177

Query: 611 -AEKTAILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646
             E      + +  V  Q                ++  EA+    G+M+G
Sbjct: 178 VDEIVNRAQAEIFAVTEQRTTEDYLPLGDIMEGALDEIEAIGSRSGEMTG 227


>gi|255284335|ref|ZP_05348890.1| toprim [Bryantella formatexigens DSM 14469]
 gi|255265131|gb|EET58336.1| toprim [Bryantella formatexigens DSM 14469]
          Length = 400

 Score = 58.0 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 108/348 (31%), Gaps = 32/348 (9%)

Query: 16  PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75
            I +++ + ++   R+ N     Y   CPF + +T   + N  K  + C  C+ +G  L 
Sbjct: 10  DIRDVV-RVLNLRIRRKN--SYSYDVDCPFCNFETGKMNINIQKDVFRCNYCNEQGGMLD 66

Query: 76  FLSALLGCSFIESVQRLAAIAGV-------PLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
             + L   +  E+ +++     +        +P    ++ + E  +     +++     +
Sbjct: 67  LYAKLYHLTKSEANRQIREALNLGQYRDDYKVPEKKKELPEMENSERASDEVLDHT---Y 123

Query: 129 HHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPD-SRYSLREHLRQKGFSEEKIIEA 186
              L      ++    L  RG+    IE  +    P      +   L +K  + + +   
Sbjct: 124 AEMLSMLPLSQKHREDLLGRGLTREQIEEQRYRSVPAFGMKEMTRWLLEKECTVQGVPGF 183

Query: 187 GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK 246
            L  DG+ +     R    ++ PI S  G++  F  R     +S KY+            
Sbjct: 184 YLDSDGNWTVNLNARKSG-ILIPILSMEGKIQGFQIRLDQVTDSRKYI------WLSSTN 236

Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ-AGVQNVVSSLGT---AL 302
             Y           S    +       + + EG +        +G   + +        +
Sbjct: 237 YPYG------TSSGSPVHVIGNLDDEEVYVTEGALKGTIAHYLSGNTFLCAPGVNQHRGI 290

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
                 LL +    +   +D D                  + G     
Sbjct: 291 APVLEALLKRNLRFVREAYDMDKKMRINCDHHSSHCAQCTLTGQPEYC 338


>gi|260593545|ref|ZP_05859003.1| putative mobilizable transposon, excision protein [Prevotella
           veroralis F0319]
 gi|260534533|gb|EEX17150.1| putative mobilizable transposon, excision protein [Prevotella
           veroralis F0319]
          Length = 326

 Score = 57.6 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 19/125 (15%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            + +  +     I   + +       +       Y    P   E  PSF  +  K  +  
Sbjct: 3   EEDLSLIK-RYSIVEYLERK-GIKPVRRTPAYALYR--SPLRAETHPSFKVDTEKNLWID 58

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           ++    G  +     L  C+ +E+++ L   A        P                + A
Sbjct: 59  YAEGRGGSIIDLCMRLESCTLLEAIRHLGRNA--------PDDSAYSSR-------NDFA 103

Query: 125 TDFFH 129
           +++F 
Sbjct: 104 SNYFQ 108


>gi|218260316|ref|ZP_03475688.1| hypothetical protein PRABACTJOHN_01350 [Parabacteroides johnsonii
          DSM 18315]
 gi|218224601|gb|EEC97251.1| hypothetical protein PRABACTJOHN_01350 [Parabacteroides johnsonii
          DSM 18315]
          Length = 321

 Score = 57.6 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I+D+   IPI++ +    Y    ++         W   P  +E  PSF  N  +  +Y F
Sbjct: 3  IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56

Query: 66 SCHVKGDHL 74
               G+ +
Sbjct: 57 GAGKGGNII 65


>gi|298483951|ref|ZP_07002121.1| DNA primase [Bacteroides sp. D22]
 gi|298269860|gb|EFI11451.1| DNA primase [Bacteroides sp. D22]
          Length = 295

 Score = 57.6 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 18/213 (8%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I +    + I + +        R        YW   P   E TPSF  ND    +Y F 
Sbjct: 2   TIDEAK-RVRIVDFLA---QLGHRAQYMKSEQYWYLSPLRKEVTPSFKVNDRLNEWYDFG 57

Query: 67  CHVKGDHL---SFLSALLGCSFIESVQRLAAIA--GVPLPVVD---PKIEKKEKIQTDLI 118
               GD +    +L      S  E++  +      GV LP            E    +LI
Sbjct: 58  EATGGDLVELGKYLCGTKSVS--EALAYI-KRYVNGVSLPSPRALPATSRPVETDMKNLI 114

Query: 119 RL---IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
            +         + H  + ++   R+        +          G           + + 
Sbjct: 115 IVPLRHHALLSYLHSRMIDSDIGRMFCKEVHYELRQRRYFALAFGNISGGYEVRNPYYKG 174

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208
              +++  +      +  +    ++ F + L +
Sbjct: 175 CIKNKDISLIPQSRGEAQSRVCLFEGFMDFLSY 207


>gi|262382830|ref|ZP_06075967.1| DNA primase [Bacteroides sp. 2_1_33B]
 gi|262295708|gb|EEY83639.1| DNA primase [Bacteroides sp. 2_1_33B]
          Length = 321

 Score = 57.6 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I+D+   IPI++ +    Y    ++         W   P  +E  PSF  N  +  +Y F
Sbjct: 3  IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56

Query: 66 SCHVKGDHL 74
               G+ +
Sbjct: 57 GAGKGGNII 65


>gi|240047492|ref|YP_002960880.1| Replicative DNA helicase [Mycoplasma conjunctivae HRC/581]
 gi|239985064|emb|CAT05057.1| Replicative DNA helicase [Mycoplasma conjunctivae]
          Length = 461

 Score = 57.6 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 1/134 (0%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L            E  +L   +  P  +      L++  + + +L  ++  +  
Sbjct: 2   ETKFKPLKMSNHRYNAPDIERIILTYFLRRPDKVHRYINLLSEEDFSDKQLSIIFLAIKK 61

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                  F  E + + L   G  EL+  L   + +        +  I    +   +  AL
Sbjct: 62  LMNNNGSFSVELLIEHLRSYGKLELIGGL-PTIANLSKSFLVFDNTIEQYIKIVTEKTAL 120

Query: 585 YKRFRLLSRQKEEI 598
               +LL    + I
Sbjct: 121 RNLKKLLEESLKNI 134


>gi|224371932|ref|YP_002606098.1| hypothetical protein HRM2_48860 [Desulfobacterium autotrophicum
           HRM2]
 gi|223694651|gb|ACN17934.1| hypothetical protein HRM2_48860 [Desulfobacterium autotrophicum
           HRM2]
          Length = 118

 Score = 57.6 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 12/102 (11%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFH--CNDSK 59
            +    +  L  +IP+  LI  ++      +    G +   CP  +E    F    N + 
Sbjct: 4   RFSSRELFKLRNNIPVDILIRDHLQI---PSKIRDGFFRFLCPLCNE----FQTAVNPAT 56

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
               CF C    + +  +  +    F +SV  L     +P+P
Sbjct: 57  NLARCFRCEKNFNTIDLVMVVRKYGFRDSVLYLQE---LPVP 95


>gi|253563403|ref|ZP_04840860.1| DNA primase [Bacteroides sp. 3_2_5]
 gi|251947179|gb|EES87461.1| DNA primase [Bacteroides sp. 3_2_5]
          Length = 323

 Score = 57.6 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 21 IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79
          I +Y+            G  W   PF DE+ PSF  N  +  +Y F     G+ ++    
Sbjct: 12 IEEYLHSLGYSPVRQQGGSLWYNSPFRDEQEPSFKVNTERNLWYDFGAGKGGNIIALAQE 71


>gi|53712571|ref|YP_098563.1| DNA primase [Bacteroides fragilis YCH46]
 gi|52215436|dbj|BAD48029.1| DNA primase [Bacteroides fragilis YCH46]
          Length = 322

 Score = 57.6 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 21 IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79
          I +Y+            G  W   PF DE+ PSF  N  +  +Y F     G+ ++    
Sbjct: 11 IEEYLHSLGYSPVRQQGGSLWYNSPFRDEQEPSFKVNTERNLWYDFGAGKGGNIIALAQE 70


>gi|182437462|ref|YP_001825181.1| putative replicative DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326778117|ref|ZP_08237382.1| replicative DNA helicase [Streptomyces cf. griseus XylebKG-1]
 gi|178465978|dbj|BAG20498.1| putative replicative DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326658450|gb|EGE43296.1| replicative DNA helicase [Streptomyces cf. griseus XylebKG-1]
          Length = 491

 Score = 57.6 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 72/223 (32%), Gaps = 26/223 (11%)

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
               S   R  +K    R  +GP +     S    ++  +    E ++L  ++     + 
Sbjct: 19  RLPVSRQRRGDRKGREDRHDRGPDEAWEVGSPGFERVPPQDLDAEQSVLGGMLLSKDAIA 78

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +  + +    +     + +++ +   + + +   P  +   L +RG      ++ +    
Sbjct: 79  DVVEIIKGHDFYRPAHETVYTAILDLYAKGEPADPITVAAELVKRG------EITKVGGA 132

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTAI 616
             L +             Y + +      R + R+  E   +I Q+    +    E    
Sbjct: 133 PYLHTLVQSVPTAANASYYAEIVH----ERAVLRRLVEAGTKITQMGYAADGDVDEIVNS 188

Query: 617 LISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646
             + ++ V  Q                ++  EA+    G+M+G
Sbjct: 189 AQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 231


>gi|153807825|ref|ZP_01960493.1| hypothetical protein BACCAC_02109 [Bacteroides caccae ATCC 43185]
 gi|149129434|gb|EDM20648.1| hypothetical protein BACCAC_02109 [Bacteroides caccae ATCC 43185]
          Length = 323

 Score = 57.6 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 21 IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79
          I +Y+            G  W   PF DE+ PSF  N  +  +Y F     G+ ++    
Sbjct: 12 IEEYLHSLGYSPVRQQGGSLWYNSPFRDEQEPSFKVNTERNLWYDFGAGKGGNIIALAQE 71


>gi|298386122|ref|ZP_06995679.1| DNA primase [Bacteroides sp. 1_1_14]
 gi|298261350|gb|EFI04217.1| DNA primase [Bacteroides sp. 1_1_14]
          Length = 321

 Score = 57.6 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I+D+   IPI++ +    Y    ++         W   P  +E  PSF  N  +  +Y F
Sbjct: 3  IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56

Query: 66 SCHVKGDHL 74
               G+ +
Sbjct: 57 GAGKGGNII 65


>gi|116625067|ref|YP_827223.1| hypothetical protein Acid_5997 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228229|gb|ABJ86938.1| hypothetical protein Acid_5997 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 218

 Score = 57.6 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 46/171 (26%), Gaps = 34/171 (19%)

Query: 10  DLLIHIPISNL---IGQYVDWD-RRKTN--AVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
           +++  + IS +   +G       RR          Y            S   +D KG ++
Sbjct: 6   EIISSVRISEVWAALGGG-PLRHRRGRAFWRNGDGY------------SVSLSDEKGVWH 52

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
            F     G  L  +  + G   ++++Q +A +AG+ L        +  K +         
Sbjct: 53  DFVSGAGGGVLDLIQHVRGGRRVDALQYVAELAGLTL-----GSRQFSKREKRAHAAHVR 107

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
                                  RG            Y      +L    R
Sbjct: 108 QAKHLAQQ----------CAWWVRGYAQALERAKASAYEHGDWDALAWSGR 148


>gi|257440736|ref|ZP_05616491.1| conserved hypothetical protein [Faecalibacterium prausnitzii
           A2-165]
 gi|257196831|gb|EEU95115.1| conserved hypothetical protein [Faecalibacterium prausnitzii
           A2-165]
          Length = 205

 Score = 57.6 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            +YCF C   GD +   + L G    E+  RLA   GV             K        
Sbjct: 6   RFYCFGCGASGDVIDLAALLHGLGKREAAVRLAEDFGVS-YEKSGNAPPDRKRHNRSQPR 64

Query: 121 IEVATDFFHH 130
            + A   F  
Sbjct: 65  QKSAEQRFQE 74


>gi|150005000|ref|YP_001299744.1| DNA primase [Bacteroides vulgatus ATCC 8482]
 gi|149933424|gb|ABR40122.1| DNA primase [Bacteroides vulgatus ATCC 8482]
          Length = 323

 Score = 57.6 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 21 IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79
          I +Y+            G  W   PF DE+ PSF  N  +  +Y F     G+ ++    
Sbjct: 12 IEEYLHSLGYSPVRQQGGSLWYNSPFRDEQEPSFKVNTERNLWYDFGAGKGGNIIALAQE 71


>gi|239980819|ref|ZP_04703343.1| replicative DNA helicase [Streptomyces albus J1074]
 gi|291452679|ref|ZP_06592069.1| replicative DNA helicase [Streptomyces albus J1074]
 gi|291355628|gb|EFE82530.1| replicative DNA helicase [Streptomyces albus J1074]
          Length = 489

 Score = 57.6 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 67/226 (29%), Gaps = 26/226 (11%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                +     R   K       +         +    ++  +    E ++L  ++    
Sbjct: 14  DAGPGDRLPASRRRGKGNDGGRDRDGDNWEGGGATAFERVPPQDLDAEQSVLGGMLLSKD 73

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            + +  + L    +     + ++  +   + + +   P  +   L +RG      ++ + 
Sbjct: 74  AIADVVEILKGNDFYRPAHETIYQAILDLYAKGEPADPITVAAELTKRG------EITKV 127

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEK 613
                L +           + Y + +      R + R+  E   +I Q+    +    E 
Sbjct: 128 GGAPYLHTVVQTVPTAANAEYYAEIVH----ERAVLRRLVEAGTKITQMGYAADGDVDEI 183

Query: 614 TAILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646
                + ++ V  Q                ++  EA+    G+M+G
Sbjct: 184 VNSAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 229


>gi|258512882|ref|YP_003186316.1| replicative DNA helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479608|gb|ACV59927.1| replicative DNA helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 459

 Score = 57.6 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 57/167 (34%), Gaps = 10/167 (5%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           + +    ++       E A+L  ++  P  + E  + L    +  +  Q ++  +   + 
Sbjct: 11  REAEAALRMPPHNLEAEQAVLGAMLISPDAVVEAMEILEADDFYRSAHQAIYRAIREVYE 70

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                    +  RL    +G++L  +      A L +    A             A   R
Sbjct: 71  AGDPVDIITVASRLRT--YGDVLDAVGGPEYLADLAAMMPTAL------HVVHY-AEIVR 121

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            + L R+      +IA+   + +A     +++    + +++ Q +  
Sbjct: 122 EKALLRRIISAGTRIAEAAYEPDA-SAMEVLADAERLVLELSQHQRT 167


>gi|163815093|ref|ZP_02206478.1| hypothetical protein COPEUT_01249 [Coprococcus eutactus ATCC 27759]
 gi|158449613|gb|EDP26608.1| hypothetical protein COPEUT_01249 [Coprococcus eutactus ATCC 27759]
          Length = 205

 Score = 57.6 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            +YCF C   GD + F + L G    E+  RLA   GV             K        
Sbjct: 6   RFYCFGCRASGDVIDFAALLHGLGKREAAVRLAEDFGVS-YEKSGNAPPDRKRNNRSQPR 64

Query: 121 IEVATDFFHH 130
            + A   F  
Sbjct: 65  QKSAEQRFQE 74


>gi|288925968|ref|ZP_06419897.1| mobilizable transposon, excision protein [Prevotella buccae D17]
 gi|288337188|gb|EFC75545.1| mobilizable transposon, excision protein [Prevotella buccae D17]
          Length = 320

 Score = 57.2 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 5  RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           + +  +    PI   + +       +       Y    P  +E  PSF  +  K  +  
Sbjct: 3  EEDLSLIK-RYPIVEYLERR-GIRPVRKTPAYAMYR--SPLREETRPSFKVDREKNLWID 58

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
          ++    G  +     L GC+  E++ RL   A
Sbjct: 59 YAEGRGGSIIDLCMRLEGCTLSEAICRLGQNA 90


>gi|117923574|ref|YP_864191.1| primary replicative DNA helicase [Magnetococcus sp. MC-1]
 gi|117607330|gb|ABK42785.1| primary replicative DNA helicase [Magnetococcus sp. MC-1]
          Length = 460

 Score = 57.2 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 48/169 (28%), Gaps = 12/169 (7%)

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
           +       L Q      K +      E ++L  ++    ++      L    +     +K
Sbjct: 2   EPLNSGSPLGQDPDAPKKRATWSREAEQSVLGAILLDNHVMDSVADALDVDDFYMGAHRK 61

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATT 567
           ++  +       +   P  I Q L                ELL  +              
Sbjct: 62  IYQAMLDLLERGEPLDPVVIRQYLERSDELDSVGGPVYLAELLNTVPTAANAKAYARMVR 121

Query: 568 EANIVDVRQGYQQAL--ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +  ++         +    +     + +  EE E++I Q+    ++ ++
Sbjct: 122 DKALLRGLAQTATEVVERCHTSEAPVDQILEEAEQKIFQLGESKDSRRS 170


>gi|317480756|ref|ZP_07939842.1| DNA primase [Bacteroides sp. 4_1_36]
 gi|319644229|ref|ZP_07998742.1| DNA primase [Bacteroides sp. 3_1_40A]
 gi|316903097|gb|EFV24965.1| DNA primase [Bacteroides sp. 4_1_36]
 gi|317384220|gb|EFV65192.1| DNA primase [Bacteroides sp. 3_1_40A]
          Length = 322

 Score = 57.2 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 77/286 (26%), Gaps = 25/286 (8%)

Query: 14  HIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
            I I   +    Y    R+         W   PF DE  PSF  N  +  +Y F     G
Sbjct: 8   RIRIEEYLHSLGYSPVRRQGN-----SLWYKSPFRDECEPSFKVNTERNLWYDFGASKGG 62

Query: 72  DHLSFLSAL---LGCSFIESVQRLAAIA-GVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
           + ++    L       ++  ++++A  A  V         +   K     +  + +++  
Sbjct: 63  NIIALAQELYASDSLPYL--LEKIAEQAPNVRPVSFSFGGQPFSKPSFRQLEAVPLSSPA 120

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
               L+           +   +               +R    E   +         +  
Sbjct: 121 LFSYLRQRGINTELAKRECCEVRYQTDGKPYFAVGFPNRSGGYEIRNKFFKGCIAPKDIT 180

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS---------PE 238
            +       T Y            +   ++    GR    G+    LNS         P 
Sbjct: 181 HIRQEQTKETCYLFEGFMDYLSFLTL--RLERCPGRPELDGQDYIVLNSTASLSKAIHPL 238

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284
               H    L N   A     + +R++          +  GY D+ 
Sbjct: 239 GDYEHIHCFLDN-DKAGMEAVQELREEYGMRIRDASHIYGGYNDLN 283


>gi|154489828|ref|ZP_02030089.1| hypothetical protein PARMER_00056 [Parabacteroides merdae ATCC
           43184]
 gi|329960368|ref|ZP_08298793.1| hypothetical protein HMPREF9446_00352 [Bacteroides fluxus YIT
           12057]
 gi|154089270|gb|EDN88314.1| hypothetical protein PARMER_00056 [Parabacteroides merdae ATCC
           43184]
 gi|328532806|gb|EGF59588.1| hypothetical protein HMPREF9446_00352 [Bacteroides fluxus YIT
           12057]
          Length = 321

 Score = 57.2 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 15/101 (14%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I+D+   IPI++ +    Y    R+         W   P  +E   SF  N  +  +Y F
Sbjct: 3   IEDVKQ-IPIADYLHSLGYSPVKRQGNGL-----WYKSPLREEHEASFKVNTDRNLWYDF 56

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK 106
                G+ ++    L    F +S+  L       +    P 
Sbjct: 57  GAGKGGNIIALAKELY---FSDSLPYLLKR----IEEQTPN 90


>gi|160886771|ref|ZP_02067774.1| hypothetical protein BACOVA_04784 [Bacteroides ovatus ATCC 8483]
 gi|298383595|ref|ZP_06993156.1| mobilizable transposon, excision protein [Bacteroides sp. 1_1_14]
 gi|156107182|gb|EDO08927.1| hypothetical protein BACOVA_04784 [Bacteroides ovatus ATCC 8483]
 gi|298263199|gb|EFI06062.1| mobilizable transposon, excision protein [Bacteroides sp. 1_1_14]
          Length = 295

 Score = 57.2 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 69/225 (30%), Gaps = 26/225 (11%)

Query: 7   FIKDLLIHIPISNLI---GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            I +    + I + +   G +    +         YW   P  +E+TPSF  ND    +Y
Sbjct: 2   TIAEAKQ-VRIVDFLARLGHHTQHIKSG------QYWYLSPLRNERTPSFKVNDRINEWY 54

Query: 64  CFSCHVKGDHL---SFLSALLGCSFIES---VQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117
            F     GD +    ++      S  E+   ++RL    G  LP           ++ ++
Sbjct: 55  DFGEATGGDLVELAKYICRTDCVS--EALAYIERLVN--GASLPRTRMLTAPPRPVEAEM 110

Query: 118 IRL------IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171
             +            +    L +A   R++       +          G           
Sbjct: 111 KDVIVIPLRHHALFSYLQSRLIDADISRMYCKEVHYELRGRHYFALAFGNISGGYEVRNA 170

Query: 172 HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQ 216
           + +    +++  +   L  +   +   ++ F + L +      G 
Sbjct: 171 YYKGCLNNKDISLIRHLTEETQENVCVFEGFMDFLSYMTLKLAGD 215


>gi|189465350|ref|ZP_03014135.1| hypothetical protein BACINT_01699 [Bacteroides intestinalis DSM
          17393]
 gi|189437624|gb|EDV06609.1| hypothetical protein BACINT_01699 [Bacteroides intestinalis DSM
          17393]
          Length = 307

 Score = 57.2 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I+D+   IPI++ +    Y    ++         W   P  +E  PSF  N  +  +Y F
Sbjct: 3  IEDVKQ-IPIADYLHSLGYPPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56

Query: 66 SCHVKGDHL 74
               G+ +
Sbjct: 57 GAGKGGNII 65


>gi|29830827|ref|NP_825461.1| replicative DNA helicase [Streptomyces avermitilis MA-4680]
 gi|29607940|dbj|BAC71996.1| putative replicative DNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 491

 Score = 57.2 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 62/188 (32%), Gaps = 26/188 (13%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++  +    E ++L  ++     + +  + L    +     + ++  +   + + +   P
Sbjct: 55  RVPPQDLDAEQSVLGGMLLSKDAIADVVEVLKGHDFYKPAHETIYQAILDIYAKGEPADP 114

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I   L +RG      ++ +    + L +           + Y + +      R + R+
Sbjct: 115 ITIAAELTKRG------EITKVGGASYLHTLVQTVPTAANAEYYAEIVH----ERAVLRR 164

Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638
             E   +I Q+    +    E      + +  V  Q                ++  EA+ 
Sbjct: 165 LVEAGTRITQMGYAADDDVDEIVNRAQAEIFAVTEQRTTEDYLPLGDIMEGALDEIEAIG 224

Query: 639 EGFGKMSG 646
              G+M+G
Sbjct: 225 SRSGEMTG 232


>gi|317503740|ref|ZP_07961754.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315665147|gb|EFV04800.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 192

 Score = 57.2 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 1  MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
          M    + +  +    PI   + +       +       Y    P  ++  PSF  +  K 
Sbjct: 1  MK--EEDLSLIK-RYPIVEYLERK-GIKSVRRTPSYALYR--SPLREDMHPSFKVDTEKN 54

Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA 94
           +  ++    G  +     L GC+  E+++ L  
Sbjct: 55 LWIDYAEGKGGSIIDLCMRLEGCTLSEAIRHLGR 88


>gi|160944667|ref|ZP_02091894.1| hypothetical protein FAEPRAM212_02181 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443851|gb|EDP20855.1| hypothetical protein FAEPRAM212_02181 [Faecalibacterium prausnitzii
           M21/2]
          Length = 149

 Score = 57.2 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-----LPVVDPKIEKKEKIQT 115
            ++CF C   GD + F + L   S  ++ ++LAA  G+       P+    +EK    + 
Sbjct: 6   RFHCFGCGADGDVIDFTAKLFQLSLRQAAEKLAADFGLSATDNFQPLPCKPVEKPLSPKE 65

Query: 116 DLIRLI 121
              +++
Sbjct: 66  QFYKIL 71


>gi|294630305|ref|ZP_06708865.1| replicative DNA helicase [Streptomyces sp. e14]
 gi|292833638|gb|EFF91987.1| replicative DNA helicase [Streptomyces sp. e14]
          Length = 492

 Score = 57.2 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 63/188 (33%), Gaps = 26/188 (13%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++  +    E ++L  ++     + +  + L    +     + ++  +   + + +   P
Sbjct: 55  RVPPQDLDAEQSVLGGMLLSKDAIADVVEILKGHDFYKPAHETIYQAILDVYAKGEPADP 114

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I   L +RG      ++++    + L +             Y + +      R + R+
Sbjct: 115 ITIAAELTKRG------EINKVGGASYLHTLVQTVPTAANAAYYAEIVH----ERAVLRR 164

Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638
             E   +I Q+    +    E      + ++ V  Q                ++  EA+ 
Sbjct: 165 LVEAGTRITQMGYAADDDVDEIVNRAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIG 224

Query: 639 EGFGKMSG 646
              G+M+G
Sbjct: 225 SRSGEMTG 232


>gi|42561472|ref|NP_975923.1| replicative DNA helicase DnaC [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|42492971|emb|CAE77565.1| replicative DNA helicase DnaC [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
          Length = 438

 Score = 57.2 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 60/167 (35%), Gaps = 14/167 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L   ++    L +    L    +     + ++  +     + K   P  +  RL 
Sbjct: 13  AERFVLGVAMSFSNALADIVSVLKVDDFSIPANKYIYQAIIDLNNKNKSISPISVINRL- 71

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                E + +L++   D  ++    E       + Y   +      R L    +E+E  I
Sbjct: 72  -----EAINKLEQVGGDVVVYEIAAENYTDQGLEEYIDIIHKAGVIRKLDIVIKELE--I 124

Query: 603 AQVTAKGEAEKTAILIS-ILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            +  +  + ++   +    L ++ + I + E     IE  G+++ R+
Sbjct: 125 KRNNSNTDVDELLKVAQTKLLDIDLSIKRFE-----IEPIGEVANRV 166


>gi|291514252|emb|CBK63462.1| DNA primase (bacterial type) [Alistipes shahii WAL 8301]
          Length = 321

 Score = 57.2 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I+D+   IPI++ +    Y    ++         W   P  +E  PSF  N  +  +Y F
Sbjct: 3  IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56

Query: 66 SCHVKGDHL 74
               G+ +
Sbjct: 57 GAGKGGNII 65


>gi|189467404|ref|ZP_03016189.1| hypothetical protein BACINT_03792 [Bacteroides intestinalis DSM
           17393]
 gi|189435668|gb|EDV04653.1| hypothetical protein BACINT_03792 [Bacteroides intestinalis DSM
           17393]
          Length = 321

 Score = 57.2 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 14/116 (12%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I+D+   IPI++ +    Y    ++         W   P  +E  PSF  N  +  +Y F
Sbjct: 3   IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56

Query: 66  SCHVKGDHLSFLSAL---LGCSFIESVQRLAAIA-GVPLPVVDPKIEKKEKIQTDL 117
                G+ ++    L       ++  + R+A     +          +KE     L
Sbjct: 57  GAGKGGNIIALAKELYCSDSLPYL--LNRIAEQTPHIRPVSFSFPQRRKEPSFQHL 110


>gi|296876472|ref|ZP_06900523.1| probable primase/helicase [Streptococcus parasanguinis ATCC 15912]
 gi|296432465|gb|EFH18261.1| probable primase/helicase [Streptococcus parasanguinis ATCC 15912]
          Length = 643

 Score = 57.2 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 116/387 (29%), Gaps = 59/387 (15%)

Query: 32  TNAVKGDYWA-CCPFHDE----KTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS-F 85
               KG Y    C  H      +T +FH  D    + CFSC   GD    +  + G   F
Sbjct: 21  RKGGKGAYICPLC--HSGEGRNRTGAFHIYDETQ-WKCFSCDRGGDIFDLIGYIEGIDKF 77

Query: 86  IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145
            + ++R+  +  +       K ++ E                         +       +
Sbjct: 78  KDQLKRVRELFNLSTECDGFKNQRTE---------------------FLNYNAVFPLKGE 116

Query: 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR 205
           E+  +  +     + +  ++ Y L+   R   F   +  + G +    +   +       
Sbjct: 117 EKKDNYSSFYNEAIKHLCETDYFLK---RGLSFPTVQQFKVGYVKKWKHPHVTNPNVPET 173

Query: 206 LIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKD 265
               I  S     A   R +      +   + + +      N               + +
Sbjct: 174 PRLIIPLSESCYFARDTREIVPE--PQLNYTKQKVGGSDIFN---------------KSE 216

Query: 266 VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL---WKLSPRIVLCFD 322
           + + S+  I +VEG +D +S+    V      LG+     +L  L    K+    +L  D
Sbjct: 217 LFKKSADPIFIVEGEIDAMSI--VEVGGKAVGLGSIGNIKKLINLVSDLKIDRTFILSLD 274

Query: 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG---KTAFEKLIVESL 379
            D+ G  A  K  +    +         + +   +DP+  +           E  I ++ 
Sbjct: 275 QDEKGREAELKLAE-QFRNKKIKFISFKLTIDDVKDPNDMLVKNKGVFNKMVEYAINQTK 333

Query: 380 PLVDMLWKRETENRSFNTPDERAELEI 406
              +   +  T N      ++      
Sbjct: 334 SEKERYLEYSTANHLPKFFNDITNGSN 360


>gi|282858309|ref|ZP_06267494.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010]
 gi|303236463|ref|ZP_07323050.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|282588940|gb|EFB94060.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010]
 gi|302483314|gb|EFL46322.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
          Length = 334

 Score = 57.2 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 4/113 (3%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
            + +  +     I   + +       +       Y    P  +E  PSF  +  K  +  
Sbjct: 3   EEDLSLIK-RYSIVEYLERK-GIKPLRRTPSYALYR--SPLREETHPSFKVDTQKNLWID 58

Query: 65  FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117
           ++    G  +     L GC+  E++ RL   A   +     K   +  +Q  +
Sbjct: 59  YAEGRGGSIIDLCMRLEGCTLSEAICRLGQNATDNITYSSHKDFSQNNLQPTM 111


>gi|301321483|gb|ADK70126.1| replicative DNA helicase [Mycoplasma mycoides subsp. mycoides SC
           str. Gladysdale]
          Length = 438

 Score = 57.2 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 60/167 (35%), Gaps = 14/167 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L   ++    L +    L    +     + ++  +     + K   P  +  RL 
Sbjct: 13  AERFVLGVAMSFSNALADIVSVLKVDDFSIPANKYIYQAIIDLNNKNKSISPISVINRL- 71

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                E + +L++   D  ++    E       + Y   +      R L    +E+E  I
Sbjct: 72  -----EAINKLEQVGGDVVVYEIAAENYTDQGLEEYIDIIHKAGVIRKLDIVIKELE--I 124

Query: 603 AQVTAKGEAEKTAILIS-ILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            +  +  + ++   +    L ++ + I + E     IE  G+++ R+
Sbjct: 125 KRNNSNTDVDELLKVAQTKLLDIDLSIKRFE-----IEPIGEVANRV 166


>gi|317480477|ref|ZP_07939571.1| DNA primase [Bacteroides sp. 4_1_36]
 gi|316903371|gb|EFV25231.1| DNA primase [Bacteroides sp. 4_1_36]
          Length = 70

 Score = 57.2 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 21 IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
          I +Y+            G  W   PF DE+ PSF  N  +  +Y F     G+ +
Sbjct: 12 IEEYLHSLGYSPVRQQGGSLWYNSPFRDEQEPSFKVNTERNLWYDFGAGKGGNII 66


>gi|304383271|ref|ZP_07365739.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304335607|gb|EFM01869.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 308

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 1  MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
          M    + +  +    PI   + +               Y    P  +E  PSF  +  K 
Sbjct: 1  MK--EEDLSLIK-RYPIVEYLERR-GIRPVHKTPTYAMYR--SPLREETRPSFKVDREKN 54

Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
           +  ++    G  +     L GC+  E++ RL   A
Sbjct: 55 LWIDYAEGRGGSIIDLCMRLEGCTLSEAICRLGQNA 90


>gi|160940710|ref|ZP_02088053.1| hypothetical protein CLOBOL_05604 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436445|gb|EDP14212.1| hypothetical protein CLOBOL_05604 [Clostridium bolteae ATCC
           BAA-613]
          Length = 407

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 65/227 (28%), Gaps = 13/227 (5%)

Query: 15  IPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
             ++ L+G  +   RR +      + A CPF  ++    + N  K  + C  C   G  L
Sbjct: 2   ADVAGLVG--LQIKRRGS----ISWEAYCPFCQDEKGKMNLNLKKNVFRCNRCGESGGML 55

Query: 75  SFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT------DFF 128
                L       +   +  + G        KI+ K+  Q         A         +
Sbjct: 56  DLYGKLYHVDHGTACSEIKELLGRETEKKPYKIQAKKVEQKIPEIPQAEAAGIEACNKTY 115

Query: 129 HHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187
              L+     +     L ERG     IE           Y        K     + +   
Sbjct: 116 TRMLEMLPLAESHRTNLLERGFSEEKIEENGYKSTLVFGYRKLAERLLKAGCTLQGVPGF 175

Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
                     ++       + P+R+  G + A   R     +  KY+
Sbjct: 176 YQDKEGRWTVNFSAKNAGFLVPVRNMDGLITAMQIRLDHPYDGRKYV 222


>gi|326430610|gb|EGD76180.1| hypothetical protein PTSG_00886 [Salpingoeca sp. ATCC 50818]
          Length = 1612

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 87/256 (33%), Gaps = 38/256 (14%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    Q     L+        + S      K        K      +++ L     + + 
Sbjct: 751  REKMLQEKVGDLEASEAALRDQLSAAEEKVKALETELQAKTDELDAIRAELESVSANMRA 810

Query: 481  SLREAALLLTLIN-----HPAILQEQYQELADIRYDNNELQKLWS---FLFSDFVEQKYF 532
            +      L  ++N     H A +     E++D++    E +++      +  +  EQ   
Sbjct: 811  AAEAGLSLTEMLNKLKEEHAAKVAALEAEISDLKKKVAEYERILQGVKEMLENQGEQGDA 870

Query: 533  LPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------- 582
               +I  +L +R      L  +L+R +R+     A  ++ +  +RQ  +Q          
Sbjct: 871  DAGDIIAQLKKRLEMSDALQAELERSLREMEEELAAKDSELAQLRQDLEQLQLRKSQLEE 930

Query: 583  ---ALYKRFRLLSRQKEEIEKQIAQVTAKGEA-----------------EKTAILISILH 622
                L +++  L  Q  ++E  +A     G+                  E+   L+  L 
Sbjct: 931  RLADLQQQYDELDAQYRKLEALLASAGGHGDDREEELVQEGAAADMSMGERLQKLLQELR 990

Query: 623  EVHIQIHQIESQEAMI 638
            E   +I ++++ EA +
Sbjct: 991  EQAEEIARLKAAEASL 1006



 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 11/218 (5%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + +    Q L  +     +      +   R +  +     L  S             + 
Sbjct: 721 KEEVARVTQALRDEEDARAAQAEELEQTQRREKMLQEKVGDLEASEAALRDQLSAAEEKV 780

Query: 485 AAL---LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            AL   L    +    ++ + + ++       E     + + +   E+       +   +
Sbjct: 781 KALETELQAKTDELDAIRAELESVSANMRAAAEAGLSLTEMLNKLKEEHAAKVAALEAEI 840

Query: 542 CERGFGELLKQLDRQVR-DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            +    + + + +R ++    +     E    D      Q   L KR  +    + E+E+
Sbjct: 841 SD--LKKKVAEYERILQGVKEMLENQGEQGDADAGDIIAQ---LKKRLEMSDALQAELER 895

Query: 601 QIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQEA 636
            + ++  +   +  + A L   L ++ ++  Q+E + A
Sbjct: 896 SLREMEEELAAKDSELAQLRQDLEQLQLRKSQLEERLA 933



 Score = 37.2 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 70/215 (32%), Gaps = 15/215 (6%)

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                  +   L+++ ++   + S   +  +   + + +K   +  +     +        
Sbjct: 887  DALQAELERSLREMEEELAAKDSELAQLRQDLEQLQLRKSQLEERLADLQQQYDELDAQY 946

Query: 482  LREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             +  ALL +   H    +E    +  A        LQKL   L     E           
Sbjct: 947  RKLEALLASAGGHGDDREEELVQEGAAADMSMGERLQKLLQELREQAEEIARLKAA---- 1002

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLSRQKEEI 598
               E      ++QL++   +A        A++ D     QQA    + +      +  E+
Sbjct: 1003 ---EASLRSQVEQLEKDKAEAQDTI----ADLEDQVAALQQAREEVEGKLERAMERIHEL 1055

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            E +IA++ A+ E  KT      L  +      IE 
Sbjct: 1056 ELEIARLKAQLEKLKTLTATQRL-ALEQHKEVIEK 1089


>gi|227548527|ref|ZP_03978576.1| replicative DNA helicase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079356|gb|EEI17319.1| replicative DNA helicase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 498

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 65/198 (32%), Gaps = 12/198 (6%)

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
              E         +    R + G +    +  L + +        E  ++  ++  P  +
Sbjct: 18  IPPEPEDEPAGSPRGGSSRYRGGSNFNRSRDDLREYRQPPHDERAERGVIGAMLLSPDTI 77

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            E   EL    +     Q +++ +   F          +  +L        L QL+R   
Sbjct: 78  IEVSNELRAEDFYFPAHQLIFTAILQLFSGGANIDVLIVAGQLDR------LNQLERVGG 131

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
              L +  +E       + Y + +A     + L RQ       + Q+  +G  E+   + 
Sbjct: 132 APYLHTLISEVPTAANARYYAEIVA----EKSLLRQLVNAGTNVVQLGYEG--EEGMEVE 185

Query: 619 SILHEVHIQIHQIESQEA 636
           +++     +I  +  +EA
Sbjct: 186 ALVDRAQQEIFNVSRKEA 203


>gi|218291256|ref|ZP_03495240.1| replicative DNA helicase [Alicyclobacillus acidocaldarius LAA1]
 gi|218238858|gb|EED06069.1| replicative DNA helicase [Alicyclobacillus acidocaldarius LAA1]
          Length = 459

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 10/167 (5%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           Q +    ++       E A+L  ++  P  + E  + L    +  +  Q ++  +   + 
Sbjct: 11  QGAEAALRMPPHNLEAEQAVLGAMLISPDAVVEALEILEADDFYRSAHQAIYRAIREVYE 70

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                    +  RL    +G++L  +      A L +    A             A   R
Sbjct: 71  AGDPVDIITVASRLRT--YGDVLDAVGGPEYLADLAAMMPTAL------HVVHY-AEIVR 121

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            + L R+      +IA+   + +A     +++    + +++ Q +  
Sbjct: 122 EKALLRRIISAGTRIAEAAYEPDA-SAMEVLADAERMVLELSQHQRT 167


>gi|237714823|ref|ZP_04545304.1| DNA primase [Bacteroides sp. D1]
 gi|262406904|ref|ZP_06083453.1| DNA primase [Bacteroides sp. 2_1_22]
 gi|294646184|ref|ZP_06723839.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294810605|ref|ZP_06769256.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC
          1b]
 gi|229445148|gb|EEO50939.1| DNA primase [Bacteroides sp. D1]
 gi|262355607|gb|EEZ04698.1| DNA primase [Bacteroides sp. 2_1_22]
 gi|292638479|gb|EFF56842.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294442198|gb|EFG11014.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC
          1b]
          Length = 321

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I+D+   IPI++ +    Y    ++         W   P  +E  PSF  N  +  +Y F
Sbjct: 3  IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56

Query: 66 SCHVKGDHL 74
               G+ +
Sbjct: 57 GAGKGGNII 65


>gi|303235422|ref|ZP_07322037.1| conserved domain protein [Prevotella disiens FB035-09AN]
 gi|302484370|gb|EFL47350.1| conserved domain protein [Prevotella disiens FB035-09AN]
          Length = 153

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 5  RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           + +  +     I   + +       +       Y    P  +E  PSF  +  K  +  
Sbjct: 3  EEDLSLIK-RYSIVEYLERK-GIKPLRRTPSYALYR--SPLREETHPSFKVDTQKNLWID 58

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
          ++    G  +     L GC+  E++ RL   A
Sbjct: 59 YAEGRGGSIIDLCMRLEGCTLSEAICRLGQNA 90


>gi|242279615|ref|YP_002991744.1| P4 family phage/plasmid primase [Desulfovibrio salexigens DSM 2638]
 gi|242122509|gb|ACS80205.1| phage/plasmid primase, P4 family [Desulfovibrio salexigens DSM
           2638]
          Length = 788

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 103/346 (29%), Gaps = 59/346 (17%)

Query: 41  ACCPFHDEKTPSFHCNDSKGFYYCF-SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
             CPFH +  PSF  N  + ++ C   C   GD +     +      E  +      G  
Sbjct: 33  GKCPFHADDNPSFGYNFEEDYFNCLAGCTDCGDLIKLYGLVNNLPNDEGFKSFKDKYGQG 92

Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159
           +       +  ++ + +                   +        +            ++
Sbjct: 93  VKDAPKPRKTVQQKRKE------------------GKGGSTPVIPESVWG--------RM 126

Query: 160 GYAPDSRYSLREHLRQKG---FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQ 216
              PD  + +   +R           +       D D +    +    R+  PIR ++GQ
Sbjct: 127 ALLPDDWFEVFRKVRGWSPEVIKRHDLRMQMCYRDRDENIRPINGAPMRVAIPIRDAQGQ 186

Query: 217 VIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIIL 276
           +     R +            + I + +G      F AL  + KS            I+L
Sbjct: 187 L-----RNIRLYRKPGTNLKSKIISWGRGYGNARLFPALPMIAKS----------GPIVL 231

Query: 277 VEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAI 335
            EG  D  +LC        ++  +   ++    L     R ++L +D D PG   A KAI
Sbjct: 232 CEGEPD--TLCGESFGFNTATQTSKTVKWSQDHLEPFVGRDVILAYDADQPGQAHAEKAI 289

Query: 336 D-----------LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
                       +     +            G D   F   +GKTA
Sbjct: 290 RALLPVVRSLRIIEWPDFMGREPDGSWPEKDGHDLTDFFMKFGKTA 335


>gi|331703855|ref|YP_004400542.1| Replicative DNA helicase DnaC [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|256384335|gb|ACU78905.1| replicative DNA helicase [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256385168|gb|ACU79737.1| replicative DNA helicase [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455521|gb|ADH21756.1| replicative DNA helicase [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
 gi|328802410|emb|CBW54565.1| Replicative DNA helicase DnaC [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 438

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 60/167 (35%), Gaps = 14/167 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L   ++    L +    L    +     + ++  +     + K   P  +  RL 
Sbjct: 13  AERFVLGVAMSFSNALADIVSVLKVDDFSIPANKYIYQAIIDLNNKNKSISPISVINRL- 71

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                E + +L++   D  ++    E       + Y   +      R L    +E+E  I
Sbjct: 72  -----EAINKLEQVGGDVVVYEIAAENYTDQGLEEYIDIIHKAGVIRKLDIVIKELE--I 124

Query: 603 AQVTAKGEAEKTAILIS-ILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            +  +  + ++   +    L ++ + I + E     IE  G+++ R+
Sbjct: 125 KRNNSNTDVDELLKVAQTKLLDIDLSIKRFE-----IEPIGEVAKRV 166


>gi|225850833|ref|YP_002731067.1| replicative DNA helicase [Persephonella marina EX-H1]
 gi|225646403|gb|ACO04589.1| replicative DNA helicase [Persephonella marina EX-H1]
          Length = 483

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 64/176 (36%), Gaps = 11/176 (6%)

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E A+L +L+  P+++      L    + N++ + ++  +     + K     
Sbjct: 7   PLPHDEESERAILGSLMIEPSVVDLVLNILRPSDFFNSKHRIIYQAIIDISEKGKVPDIL 66

Query: 536 EIHQRLCERGFGELL-----------KQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
            +   L  +G  + +           +     V ++       ++    + Q  Q  +  
Sbjct: 67  VVRNHLKSKGKLKQIGGSSYLGLIVNEACPPNVVESVARQIKEKSIARGLIQVSQNIIQK 126

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            K ++ ++   EE E +I ++  +        +  ++ E    I+++  +E +I G
Sbjct: 127 AKDYKDVNELVEEAESEIFKLNEERAVTHYYEIKDVVKETLNIINELSKKETVITG 182


>gi|237713428|ref|ZP_04543909.1| DNA primase [Bacteroides sp. D1]
 gi|262407215|ref|ZP_06083763.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446410|gb|EEO52201.1| DNA primase [Bacteroides sp. D1]
 gi|262354023|gb|EEZ03115.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 295

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 8  IKDLLIHIPISN---LIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
          I +    I +     +IG          NA    YW   P  +E+TPSF  ND+   +Y 
Sbjct: 3  INEAKQ-IRLVEYLRIIGH------SPVNARGCQYWYLSPLREERTPSFKVNDNLNEWYD 55

Query: 65 FSCHVKGDHL 74
          F     GD +
Sbjct: 56 FGLSAGGDII 65


>gi|50364899|ref|YP_053324.1| DNA replication priming helicase [Mesoplasma florum L1]
 gi|50363455|gb|AAT75440.1| DNA replication priming helicase [Mesoplasma florum L1]
          Length = 448

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/177 (10%), Positives = 61/177 (34%), Gaps = 12/177 (6%)

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E  +L   ++ P  L +    L    + ++  + ++  +     + K     
Sbjct: 7   SENNLHSVEKMVLAIAMHSPNALPDIMTGLVADDFLDSTHKIIFQGIIELHSQSKEVTIS 66

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN--IVDV---------RQGYQQALAL 584
            +  ++ ++G  E +  + R    A  + +       I D+             ++   L
Sbjct: 67  SVANQIEKKGNLESIGGIQRLQDIALDFFSDEGIENFIEDIFYASSSRKFDAALRRVQNL 126

Query: 585 YKRFRL-LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +  ++ +     EI+K++ ++    +      + +    +  +I ++E +   + G
Sbjct: 127 RREEQMDIESSINEIQKELLKIDLNAQKNDVQSIHASTESLIKKIQELEKRSETLTG 183


>gi|312621802|ref|YP_004023415.1| hypothetical protein Calkro_0705 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202269|gb|ADQ45596.1| hypothetical protein Calkro_0705 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 370

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 85/304 (27%), Gaps = 19/304 (6%)

Query: 53  FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS----FIESVQRL--AAIAGVPLPVVDPK 106
            + N  K  +YC  C V G+ L   + L        + E VQ L  A  A   +      
Sbjct: 46  LYINVYKNTFYCHKCGVGGNALQLYAWLNNLDTKEAYREIVQELKGAKRARKAVAEPTAT 105

Query: 107 IEKKEKIQTDLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
                    +L  + E     +   L     D     +L  RG+     +          
Sbjct: 106 YNVNVVKTENLAPV-EQRDLVYREFLNLLDLDDEHREHLLGRGLTDTFTKFKMYKSLNIK 164

Query: 166 RYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
               R+ + +K   +   +E        ++        N    P+R   G++     R +
Sbjct: 165 DEKSRKEICKKLIEKGLTLEGVPGFFRHSNGDWDFIPYNGFCIPVRDLEGRIQGLQVRIV 224

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
                    N  +   F  G       GA N++      +  R    FII      D+ S
Sbjct: 225 GDT------NGGKYRWFSSGNIPTGT-GAKNFVHVVGTFNEERYKRVFIIEGALKADICS 277

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLW----KLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
               G   +         +  + ++     K    + +  D D    +    + + +   
Sbjct: 278 YLMDGEMFIGIPGIANSHDQVVEVVKKLGLKYEGEVYVVVDNDYYDKKEVKNSFERIKKK 337

Query: 342 LIPG 345
               
Sbjct: 338 FNDN 341


>gi|224371487|ref|YP_002605651.1| hypothetical protein HRM2_44310 [Desulfobacterium autotrophicum
           HRM2]
 gi|223694204|gb|ACN17487.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 123

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFH--CNDSK 59
            +    + +L   IP+  LI + ++     +   +G +   CP  +E    F    N + 
Sbjct: 4   KFSSQELFELRNFIPVEMLIREQLEM---PSKISEGFFRFLCPICNE----FQTAINPAT 56

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK 109
               CF C    + +  +  +    F ESV  L     V +P  +    +
Sbjct: 57  NLARCFRCERNFNTIDLVMTVQRIGFKESVLFL-KRLMVKVPNQNKDARQ 105


>gi|17545686|ref|NP_519088.1| hypothetical protein RSc0967 [Ralstonia solanacearum GMI1000]
 gi|17427980|emb|CAD14669.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
          Length = 933

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 8/119 (6%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
             L   I + +L  + +D  R              P H +++ S    +    +  +S  
Sbjct: 14  DQLKRDIDLHDL-AERLDLRRSGAKGNYH-----SPHHTDRSASLSIFERGRAWKDWSTE 67

Query: 69  VKGDHLSFLSAL--LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
             G  +  +        + +E+ + L    G+P+P          K   + I     A 
Sbjct: 68  AGGSCIDLVQHCMPDVATPMEAAKLLGQWYGIPMPAAPASALLARKSTEEYIAERAQAN 126


>gi|291087422|ref|ZP_06571938.1| hypothetical protein CLOM621_07251 [Clostridium sp. M62/1]
 gi|291075111|gb|EFE12475.1| hypothetical protein CLOM621_07251 [Clostridium sp. M62/1]
          Length = 2511

 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 106/338 (31%), Gaps = 44/338 (13%)

Query: 53  FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
            +  +     YCFSC    D+L F+   L   F   +          +    P++ K++K
Sbjct: 1   MYLYNDSNLAYCFSCQKSWDNLEFIGEKLDLDFQGRLSW--------MEKHFPELLKQKK 52

Query: 113 -----IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167
                 Q  L    ++A   +  ++ +   + L  +   RG +    E   +  A  ++ 
Sbjct: 53  TFPVFPQKTLQSGYDIAFQAY-SNMSDKEQRLLKEFCGHRGFEEPFFEKQSIFCAAKNKL 111

Query: 168 SLREHLRQKGFSEEKI-------IEAGLLIDGDNSAT------SYDRFRNRLIFPIRSSR 214
           S      +                +  L+I             S    R+ +I P+R S 
Sbjct: 112 SSLYCRSENSTDANLTIEERLKLEDCKLVIKLPWQERQTAPRYSDHFSRDGIIIPLRDSS 171

Query: 215 GQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFI 274
           G++  F  R L   +      S       K   LY          K      + N  + I
Sbjct: 172 GKLAGFAQRALDGTQPKYLF-SKNLP---KKTLLYGID-----SLKKRLSAAKANQKTDI 222

Query: 275 ILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL-------LWKLSPRIVLCFDGDDPG 327
            +VEG  D L +     +N+ +         + +               I +C D D  G
Sbjct: 223 FIVEGIFDALRIESLEKKNISALAVLGNRLTKTQAGELQNVLSGSSGLSIHICMDADRAG 282

Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRG-EDPDSFIR 364
                + +  +  +           +  G +DPD+ I+
Sbjct: 283 RTGNLETLKSLWAYSDFMKYYIDFWVPLGEKDPDAAIQ 320


>gi|113478315|ref|YP_724376.1| hypothetical protein Tery_4989 [Trichodesmium erythraeum IMS101]
 gi|110169363|gb|ABG53903.1| NB-ARC [Trichodesmium erythraeum IMS101]
          Length = 1243

 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 75/255 (29%), Gaps = 18/255 (7%)

Query: 399  DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
            ++  EL         HI+D+  R     A+ D+  +L  + +           +      
Sbjct: 835  EKLPELLPEALAAARHIQDEYYRALVLSALADKFPELLPEALAAARHIQSERGRAHVLSA 894

Query: 459  QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
                   L+  +L   +  +    R   L       P +L E     A     +   +  
Sbjct: 895  LAEKFPELLPEALAAARHIQDEYYRAQVLSALAEKFPELLPEALA--AARHIQDEYYRA- 951

Query: 519  WSFLFSDFVEQKYFLPEEIHQ--RLCERGFG-ELLKQLDRQVRDAGLWSATT---EANIV 572
               L +   +    LPE +     + +  +  ++L  L  ++    L  A          
Sbjct: 952  -QVLSALAEKFPELLPEALAAARHIQDEYYRAQVLSALAEKLPAELLPEALAAARHIQSE 1010

Query: 573  DVRQGYQQALALYKRFRLL--------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
              R     ALA      LL          Q EE   ++    A+   E     ++    +
Sbjct: 1011 HFRAHVLSALAEKLPAELLPEALAAARHIQFEEARAKVLSALAEKLPELLPEALAAARHI 1070

Query: 625  HIQIHQIESQEAMIE 639
              +  + +   A+ E
Sbjct: 1071 QSEWDRAQVLSALAE 1085



 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 79/259 (30%), Gaps = 17/259 (6%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF-QKYITEHSGYGRYWKKNARHR 457
           D+  EL         HI+D+  R     A+ D+  +L  +         G   +      
Sbjct: 710 DKFPELLPEALAAARHIQDKYDRAQVLSALADKFPELLPEALAAARHIQGETHRAQVLSA 769

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
             K  +  L+  +L   +  +    R   L       P +L E     A     +   + 
Sbjct: 770 LAKKLTPELLPEALAAARHIQHDKYRAQVLSALAEKFPELLPEALA--AARHIQSERGRA 827

Query: 518 LWSFLFSDFVEQKYFLPEEIHQ--RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           L   L +   +    LPE +     + +  +  L+           L  A   A  +   
Sbjct: 828 L--VLSALAEKLPELLPEALAAARHIQDEYYRALVLSALADKFPELLPEALAAARHIQSE 885

Query: 576 QGYQQAL--------ALYKRFRLLSRQKEEI--EKQIAQVTAKGEAEKTAILISILHEVH 625
           +G    L         L       +R  ++     Q+    A+   E     ++    + 
Sbjct: 886 RGRAHVLSALAEKFPELLPEALAAARHIQDEYYRAQVLSALAEKFPELLPEALAAARHIQ 945

Query: 626 IQIHQIESQEAMIEGFGKM 644
            + ++ +   A+ E F ++
Sbjct: 946 DEYYRAQVLSALAEKFPEL 964



 Score = 44.1 bits (102), Expect = 0.067,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 78/262 (29%), Gaps = 29/262 (11%)

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
            EL         HI+D+  R     A+ D+  +L  + +         + +         
Sbjct: 682 PELLPEALAAARHIQDKYDRAQVLSALADKFPELLPEALAAARHIQDKYDRAQVLSALAD 741

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTL-----------------INHPAILQEQYQE 504
               L+  +L   +  +  + R   L                     I H     +    
Sbjct: 742 KFPELLPEALAAARHIQGETHRAQVLSALAKKLTPELLPEALAAARHIQHDKYRAQVLSA 801

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL--LKQLDRQVRDAGL 562
           LA+ ++     + L +         +  +   + ++L E     L   + +  +   A +
Sbjct: 802 LAE-KFPELLPEALAAARHIQSERGRALVLSALAEKLPELLPEALAAARHIQDEYYRALV 860

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
            SA  +     + +    A  +        R +  +   +A+       E     ++   
Sbjct: 861 LSALADKFPELLPEALAAARHIQS-----ERGRAHVLSALAEKFP----ELLPEALAAAR 911

Query: 623 EVHIQIHQIESQEAMIEGFGKM 644
            +  + ++ +   A+ E F ++
Sbjct: 912 HIQDEYYRAQVLSALAEKFPEL 933



 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 80/286 (27%), Gaps = 42/286 (14%)

Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRL--QQLFQKYITEHSGYGRYWKKNARHRD 458
             EL          I+D+  R +   A+ D+L  + L +             + +A    
Sbjct: 617 MPELLPEALAAARQIQDEDDRAHALSALADKLTPELLPEALAAARQIQDEDDRAHALSAL 676

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE-------------L 505
               +  L+  +L   +  +    R   L       P +L E                 L
Sbjct: 677 ADKLTPELLPEALAAARHIQDKYDRAQVLSALADKFPELLPEALAAARHIQDKYDRAQVL 736

Query: 506 ADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL---KQLDRQVRDA 560
           + +     EL  + L +         +  +   + ++L      E L   + +      A
Sbjct: 737 SALADKFPELLPEALAAARHIQGETHRAQVLSALAKKLTPELLPEALAAARHIQHDKYRA 796

Query: 561 GLWSATTEANIVDVRQGYQQALALYKR------FRLLSRQKEEIE-KQIAQVTAKGEA-- 611
            + SA  E     + +    A  +            L+ +  E+  + +A      +   
Sbjct: 797 QVLSALAEKFPELLPEALAAARHIQSERGRALVLSALAEKLPELLPEALAAARHIQDEYY 856

Query: 612 -------------EKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
                        E     ++    +  +  +     A+ E F ++
Sbjct: 857 RALVLSALADKFPELLPEALAAARHIQSERGRAHVLSALAEKFPEL 902



 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 79/275 (28%), Gaps = 30/275 (10%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
                       ++  EL         HI+D+  R     A+ ++  +L  + +       
Sbjct: 917  YYRAQVLSALAEKFPELLPEALAAARHIQDEYYRAQVLSALAEKFPELLPEALAAARHIQ 976

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP--AILQEQYQEL 505
              + +              +    +      +     A +L  L       +L E     
Sbjct: 977  DEYYRAQVLSALAEKLPAELLPEALAAARHIQSEHFRAHVLSALAEKLPAELLPEALAAA 1036

Query: 506  ADIRYDNNELQ---KLWSFLFSDFVE--------QKYFLPEEIHQRLCERGFGELL---- 550
              I+++    +    L   L     E        Q  +   ++   L E+   ELL    
Sbjct: 1037 RHIQFEEARAKVLSALAEKLPELLPEALAAARHIQSEWDRAQVLSALAEKLPAELLPEAL 1096

Query: 551  ---KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR------FRLLSRQKEEIE-K 600
               + +  +   A + SA  E     + +    A  +            L+ +  E+  +
Sbjct: 1097 AAARHIQSEWDRAKVLSALAEKLPELLPEALAAARHIQSEWGRAQVLSALAEKLPELLPQ 1156

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             +       + E  A +I  L +   ++ Q+   E
Sbjct: 1157 ALTIAQGIKDKESRAQVIVALAD---KLTQMPKTE 1188


>gi|315186482|gb|EFU20242.1| primary replicative DNA helicase [Spirochaeta thermophila DSM 6578]
          Length = 455

 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 59/187 (31%), Gaps = 18/187 (9%)

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
              P       S+ KG +       E A L  L+ +P  L      L    +     + +
Sbjct: 2   SSDPVIDRALPSVGKGFVPPHDETAEKATLGALLLNPEALPVVLPYLRPEDFYRRAHRNI 61

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           +  +   F   +      + + L      +LLK+       A L S       V+     
Sbjct: 62  YQAVLDLFDRGEAIDILTVTEELKA---RDLLKESGGAAYIASLTSEVPTTANVEYYARI 118

Query: 579 QQALALYKRFRLLSRQ---------------KEEIEKQIAQVTAKGEAEKTAILISILHE 623
            Q  ++ +R   +++Q                EE E+QI ++T  G          +L E
Sbjct: 119 VQDRSIRRRLITVAQQAVADAYDEGKEIRLTIEEAERQIFELTELGTTSTVKHTRELLTE 178

Query: 624 VHIQIHQ 630
               I +
Sbjct: 179 TINIIER 185


>gi|60682751|ref|YP_212895.1| putative transposon-related/mobilisation protein [Bacteroides
          fragilis NCTC 9343]
 gi|60494185|emb|CAH08978.1| putative transposon-related/mobilisation protein [Bacteroides
          fragilis NCTC 9343]
          Length = 344

 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 3/69 (4%)

Query: 27 WDRRKTNAVKGDY---WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC 83
                      Y       PF  + TPSF  +     +  F     G  +  +    G 
Sbjct: 15 LKSLGILPAVDKYYYGMYHSPFRQDDTPSFKVDYGVNLWCDFGTGEGGSLIDLVMKQHGY 74

Query: 84 SFIESVQRL 92
          +  +++ RL
Sbjct: 75 NAYDAICRL 83


>gi|299145439|ref|ZP_07038507.1| DNA primase [Bacteroides sp. 3_1_23]
 gi|298515930|gb|EFI39811.1| DNA primase [Bacteroides sp. 3_1_23]
          Length = 322

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 34 AVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL---LGCSFIESVQ 90
                W   PF DE+ PSF  N  +  +Y F     G+ ++    L       ++  ++
Sbjct: 25 RQGDSLWYKSPFRDEQEPSFKVNMERNLWYDFGAGRGGNIIALARELYASDSLPYL--LE 82

Query: 91 RLAAIA 96
          R+A  A
Sbjct: 83 RIAEQA 88


>gi|297627226|ref|YP_003688989.1| Replicative DNA helicase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922991|emb|CBL57573.1| Replicative DNA helicase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 451

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 56/173 (32%), Gaps = 12/173 (6%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E ++L  ++     + +  +E+    +     + ++  +   +   +      +   L 
Sbjct: 25  AEQSVLGAMLMSKDAIADVIEEVRPQDFYRPAHETIYEAIIDLYGRGEPADAVTVAAELD 84

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ- 601
           +RG    L+++  +V    L  + + A             A  +R    S +  ++  Q 
Sbjct: 85  KRG---ELERVGGRVGLVDLMQSISIAANAGYYAQIVHDKATLRRLVDASMKIAQLGYQG 141

Query: 602 ------IAQVTAKGEAEKTA-ILISILHEVHIQIH-QIESQEAMIEGFGKMSG 646
                 I     +   E +          +   +   I+  EA+    G MSG
Sbjct: 142 AGDVPDIVDAAQQTIYEVSEGKTSEDYKSLKELLEPTIDEMEAIESHTGVMSG 194


>gi|281424811|ref|ZP_06255724.1| putative mobilizable transposon, excision protein [Prevotella
          oris F0302]
 gi|299142389|ref|ZP_07035521.1| mobilizable transposon protein [Prevotella oris C735]
 gi|281401181|gb|EFB32012.1| putative mobilizable transposon, excision protein [Prevotella
          oris F0302]
 gi|298576111|gb|EFI47985.1| mobilizable transposon protein [Prevotella oris C735]
          Length = 320

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 9/89 (10%)

Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDY---WACCPFHDEKTPSFHCNDSKGFYYCFSC 67
          L+    I          +++    V+          P  +E  PSF  +  K  +  ++ 
Sbjct: 8  LIKRYSIVEY------LEKKGIRPVRRTPAYAMYRSPLREETRPSFKVDREKNLWIDYAE 61

Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIA 96
             G  +     L GC+  E++ RL   A
Sbjct: 62 GRGGSIIDLCMRLEGCTLSEAICRLGQNA 90


>gi|311897274|dbj|BAJ29682.1| putative replicative DNA helicase [Kitasatospora setae KM-6054]
          Length = 956

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 26/224 (11%)

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
              +    G  +      RD+ G  +          ++  +    E ++L  ++     +
Sbjct: 76  QRRDGGKGGDRFPGKGERRDRDGDREGGFGGGEGFERVPPQDLAAEQSVLGGMLLSKDAI 135

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            +  + L    Y     + +   +   +   +   P  +   L +RG      +L R   
Sbjct: 136 ADVVEVLKPADYYRPAHELIHGAILDLYARGEPADPITVAGELTKRG------ELARVGG 189

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV--TAKGE-AEKTA 615
            + L +           + Y + +      R + R+  E   +IA +   A+G+  +   
Sbjct: 190 ASYLHTLVNSVPTAANAEYYAEIVH----ERAVLRRLVEAGTRIAGMGYAAEGDVDDIVN 245

Query: 616 ILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646
              + ++ V  Q                ++  EA+    G+MSG
Sbjct: 246 AAQAEIYAVTEQRTNEDYAPLADIMEGALDEIEAIGSRSGQMSG 289


>gi|213427115|ref|ZP_03359865.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
          Length = 72

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 18/49 (36%)

Query: 87  ESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135
           E+VQ L    G+ +       +K       L  + E A  F+H  L   
Sbjct: 20  EAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHEDAAKFYHAILMTT 68


>gi|302559696|ref|ZP_07312038.1| replicative DNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302477314|gb|EFL40407.1| replicative DNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 492

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 64/188 (34%), Gaps = 26/188 (13%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++  +    E ++L  ++     + +  + L    +     + +++ +   + + +   P
Sbjct: 55  RVPPQDLEAEQSVLGGMLLSKDAIADVVEILKGHDFYKPAHETVYTAILDVYAKGEPADP 114

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I   L +RG      ++++    + L +             Y + +      R + R+
Sbjct: 115 ITIAAELTKRG------EINKVGGASYLHTLVQTVPTAANAAYYAEIVH----ERAVLRR 164

Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638
             E   +I Q+    +    E      + ++ V  Q                ++  EA+ 
Sbjct: 165 LVEAGTRITQMGYAADDDVDEIVNRAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIG 224

Query: 639 EGFGKMSG 646
              G+M+G
Sbjct: 225 SRSGEMTG 232


>gi|320109232|ref|YP_004184822.1| replicative DNA helicase [Terriglobus saanensis SP1PR4]
 gi|319927753|gb|ADV84828.1| replicative DNA helicase [Terriglobus saanensis SP1PR4]
          Length = 463

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/161 (9%), Positives = 55/161 (34%), Gaps = 14/161 (8%)

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
           +++          E  +L  ++  P  + +   +L    +  +  ++++  +        
Sbjct: 7   ILEKDGLPASLHTERVILGAMLTDPVAVVDATAKLHPEDFSVDSHRRIYIVILELVELGY 66

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 +   L  +      K+L+     + L S           + Y Q +      R 
Sbjct: 67  AIDAVTVADALKTK------KELEAVGNPSYLASLQEGLPRHLAIENYVQIVKDKSILRN 120

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +    +  E+ + +      A+++   + +L+++  ++ +I
Sbjct: 121 V---MKVCEEGLNRA-----ADQSEQSLGLLNDLESRLLEI 153


>gi|225017890|ref|ZP_03707082.1| hypothetical protein CLOSTMETH_01824 [Clostridium methylpentosum
          DSM 5476]
 gi|224949402|gb|EEG30611.1| hypothetical protein CLOSTMETH_01824 [Clostridium methylpentosum
          DSM 5476]
          Length = 635

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 27 WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL 77
             +  +  K  +    P H+++ PS   + ++   +CF+C    D    +
Sbjct: 18 LQNKGIDLNKP-FRCLNPQHEDRHPSMRFDPARNKAHCFACGADYDIYDLI 67


>gi|298244940|ref|ZP_06968746.1| zinc finger CHC2-family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552421|gb|EFH86286.1| zinc finger CHC2-family protein [Ktedonobacter racemifer DSM 44963]
          Length = 385

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 18/91 (19%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF---HD---EKTPSFHCN-DSK 59
            I++         +IG+YV  DR            CCPF   H    +  PS   +  SK
Sbjct: 292 TIQEWCAQQDALGVIGRYVALDRSG--------LGCCPFGWHHSDGKDTHPSLWVHEPSK 343

Query: 60  ---GFYYCFSCHVKGDHLSFLSALLGCSFIE 87
                +YC +    G    FL    G    E
Sbjct: 344 PGGACWYCHTWKQGGSVFDFLRLYYGLEARE 374


>gi|307565777|ref|ZP_07628245.1| conserved domain protein [Prevotella amnii CRIS 21A-A]
 gi|307345516|gb|EFN90885.1| conserved domain protein [Prevotella amnii CRIS 21A-A]
          Length = 167

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 10/119 (8%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    + +  +    PI     +       +       Y    P  +E  PSF  +  K 
Sbjct: 1   MK--EEDLSLIK-RYPIVEYFERK-GIKPVRRTPSYALYR--SPLREETHPSFKVDTQKN 54

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA----IAGVPLPVVDPKIEKKEKIQT 115
            +  +     G  +     L GC+  E ++ L      I  VP         K+E I+ 
Sbjct: 55  LWIDYVEGRGGSIIDLCMRLEGCTLSEVIRILGQNSPDITHVPRRESVQGTSKQESIRQ 113


>gi|307718996|ref|YP_003874528.1| hypothetical protein STHERM_c13140 [Spirochaeta thermophila DSM
           6192]
 gi|306532721|gb|ADN02255.1| hypothetical protein STHERM_c13140 [Spirochaeta thermophila DSM
           6192]
          Length = 455

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 58/187 (31%), Gaps = 18/187 (9%)

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
              P       S  KG +       E A L  L+ +P  L      L    +     + +
Sbjct: 2   SSDPVIDRALPSTGKGFVPPHDEAAEKATLGALLLNPETLPVVLPYLRPEDFYRRAHRNI 61

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           +  +   F   +      + + L      +LLK+       A L S       V+     
Sbjct: 62  YQAVLDLFDRGEAIDILTVTEELKA---RDLLKESGGAAYIASLTSEVPTTANVEYYARI 118

Query: 579 QQALALYKRFRLLSRQ---------------KEEIEKQIAQVTAKGEAEKTAILISILHE 623
            Q  ++ +R   +++Q                EE E+QI ++T  G          +L E
Sbjct: 119 VQDRSIRRRLITVAQQAVADAYDEGKEIRLTIEEAERQIFELTELGTTSTVKHTRELLTE 178

Query: 624 VHIQIHQ 630
               I +
Sbjct: 179 TINIIER 185


>gi|227487716|ref|ZP_03918032.1| replicative DNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227541422|ref|ZP_03971471.1| replicative DNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227092337|gb|EEI27649.1| replicative DNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227182810|gb|EEI63782.1| replicative DNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 487

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 67/191 (35%), Gaps = 25/191 (13%)

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
             +   ++ +   +   G+L       E  +L  +++ P +L +  + L    +     +
Sbjct: 16  PSEPPAAEDMPAPAFEAGRLPPHDIEAEQGVLGAILSSPYVLTDVLEVLKPDDFYRPMHR 75

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQR------LCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            ++S +   F E +      +  R      L   G    L  L   V  A   +A   AN
Sbjct: 76  IIYSTIIDLFSENQEIDSLILASRLERDNNLERAGGAPYLHTLVHSVPTAA--NARYYAN 133

Query: 571 IVDVRQGYQQALALYKRFRLL----------SRQKEEIEKQIAQVTAKGEAEKTAIL--- 617
           IV  +  ++Q +A   R   L           +  +  ++ + +V  +G  E   IL   
Sbjct: 134 IVAEKATFRQLVAAGTRVVQLGHQSESGIDADQAVDLAQQAVFEVQREGAQEDYQILADL 193

Query: 618 ----ISILHEV 624
               +  L E+
Sbjct: 194 LGPTMEELDEI 204


>gi|160286059|pdb|2R6A|C Chain C, Crystal Form Bh1
 gi|190016191|pdb|2R6C|G Chain G, Crystal Form Bh2
 gi|190016192|pdb|2R6C|H Chain H, Crystal Form Bh2
 gi|190016193|pdb|2R6C|I Chain I, Crystal Form Bh2
          Length = 143

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 50/154 (32%), Gaps = 14/154 (9%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           KL       E  LL        +     + +   R++  E + L +++++ + E     P
Sbjct: 1   KLLPAFQNAERLLLAHXXRSRDVALVVQERIGG-RFNIEEHRALAAYIYAFYEEGHEADP 59

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +  R+          +L     +  L     + +  ++    +  L    R + L  +
Sbjct: 60  GALISRIPG--------ELQPLASELSLLLIADDVSEQELEDYIRHVLN---RPKWLXLK 108

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            +E EK   +   + +    A +     E    +
Sbjct: 109 VKEQEK--TEAERRKDFLTAARIAKEXIEXKKXL 140


>gi|212693495|ref|ZP_03301623.1| hypothetical protein BACDOR_03012 [Bacteroides dorei DSM 17855]
 gi|237726791|ref|ZP_04557272.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|254883937|ref|ZP_05256647.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641429|ref|ZP_07996121.1| DNA primase [Bacteroides sp. 3_1_40A]
 gi|212663934|gb|EEB24508.1| hypothetical protein BACDOR_03012 [Bacteroides dorei DSM 17855]
 gi|229435317|gb|EEO45394.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|254836730|gb|EET17039.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317386948|gb|EFV67835.1| DNA primase [Bacteroides sp. 3_1_40A]
          Length = 302

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
           PF +E+TPSF  N     +  F     G     +  L  C F  +++R+
Sbjct: 34 SPFRNEETPSFMVNLHTNKWKDFGEDSSGGVADLVMRLERCDFHSAMRRI 83


>gi|265755633|ref|ZP_06090254.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234239|gb|EEZ19832.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 302

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
           PF +E+TPSF  N     +  F     G     +  L  C F  +++R+
Sbjct: 34 SPFRNEETPSFMVNLHTNKWKDFGEDSSGGVADLVMRLERCDFHSAMRRI 83


>gi|307154014|ref|YP_003889398.1| ATP-dependent chaperone ClpB [Cyanothece sp. PCC 7822]
 gi|306984242|gb|ADN16123.1| ATP-dependent chaperone ClpB [Cyanothece sp. PCC 7822]
          Length = 872

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 76/203 (37%), Gaps = 6/203 (2%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R ++           +  +++    + ++     + + AL+   +   
Sbjct: 321 YRKYIEKDAALERRFQSVYVDEPNVVDTISILRGLKERYEVHHGVKIADTALVAAAVLSN 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI---HQRLCERGFGELLKQ 552
             + +++     I   +    KL   + S   E      + +    +RL  +   + L +
Sbjct: 381 RYISDRFLPDKAIDLVDEAAAKLKMEITSKPEELDEVDRKILQLEMERLSLQKEDDPLSR 440

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
                 +  L     E    + +  +Q    L  + R + ++ E++  +I Q     +  
Sbjct: 441 ERLGRLEKELADLKEEQTQYNAQ--WQAEKELIDKLRTVKKEIEQVNVEIQQAERDYDYN 498

Query: 613 KTAIL-ISILHEVHIQIHQIESQ 634
           K A L    L ++  QI ++ESQ
Sbjct: 499 KAAELRYGKLTDLQRQIKELESQ 521


>gi|255657764|ref|ZP_05403173.1| DNA primase catalytic core domain protein [Mitsuokella multacida
           DSM 20544]
 gi|260849954|gb|EEX69961.1| DNA primase catalytic core domain protein [Mitsuokella multacida
           DSM 20544]
          Length = 596

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 75/237 (31%), Gaps = 25/237 (10%)

Query: 199 YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI-LFHKGKNLYNFFGALNY 257
           Y      L  P+R   G+ +AF  R        KY NS     LF KG+ LY     +  
Sbjct: 66  YSTKNQVLSIPMRDEFGRCVAFLYR--HFDGGAKYKNSKNVPGLFVKGEFLYGINETIKN 123

Query: 258 LQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ---AGVQNVVSSLGTALTEYQLRLLWKLS 314
           L+          ++  I+L EG +D  S  Q     +     S+  +  +    +L  + 
Sbjct: 124 LR----------NTKSIVLCEGSLDAASATQQGLCCMAYCGISITRSHADKVTEILRPIK 173

Query: 315 P-RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
             +++L  D D    +   +A ++   +         V+    +D +  +          
Sbjct: 174 GGKVILVPDNDGKASKFVLRAREIFRKYHPQTVVKVAVIPDGNKDLNDMLVNG------- 226

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
            +  +                     +    E  +   +  + +  +R   ++ +  
Sbjct: 227 -LDIAENCTYESLDYYCAKEVIKGESDPEVQEKLIVEYMKSVSNPVVRADIAEYLAK 282


>gi|86143476|ref|ZP_01061861.1| DNA primase [Leeuwenhoekiella blandensis MED217]
 gi|85829923|gb|EAQ48384.1| DNA primase [Leeuwenhoekiella blandensis MED217]
          Length = 284

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 32 TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91
           N  K  ++   P   E   SF  + S   +Y       G+ +  +  L   +  E++  
Sbjct: 29 RNTEKEAWF-LSPLRSETQASFKVSKSLNCWYDHGLGKGGNCIDLICELQNIAVREALAI 87

Query: 92 LAA 94
          LA 
Sbjct: 88 LAQ 90


>gi|282851791|ref|ZP_06261154.1| hypothetical protein HMPREF9209_0806 [Lactobacillus gasseri
          224-1]
 gi|282557033|gb|EFB62632.1| hypothetical protein HMPREF9209_0806 [Lactobacillus gasseri
          224-1]
          Length = 37

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 2  NYPRDFIKDLLIHIPISNLIGQYVDWDRR 30
            P  FI ++   + I ++I QYV  +++
Sbjct: 5  RIPEQFIDEVRNSVDIVDVISQYVSLEKK 33


>gi|331019567|gb|EGH99623.1| hypothetical protein PLA106_26312 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 966

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 10  DLLIHI--PISNLIGQYVDWDRRKTNAVKG-DYWACCPFHDEKTP-SFHCNDSKGFYYCF 65
            +       I  ++   V W         G +Y A  P   +K   S   + SKG +  F
Sbjct: 14  QVKAAALRNIDKVL---VQWLPNGKRVDGGKEYTAPNPTRTDKRAGSLKISISKGTWSDF 70

Query: 66  SCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
           +     GD +  +  + G + +E+  +LA + GV 
Sbjct: 71  ATGDKGGDLIDLVRYIDGGTDVEACNKLAELLGVT 105


>gi|330941277|gb|EGH44138.1| hypothetical protein PSYPI_17797 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 656

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 10  DLLIHI--PISNLIGQYVDWDRRKTNAVKG-DYWACCPFHDEKTP-SFHCNDSKGFYYCF 65
            +       I  ++   V W         G +Y A  P   +K   S   + SKG +  F
Sbjct: 14  QVKAAALRNIDKVL---VQWLPNGKRVDGGKEYTAPNPTRTDKRAGSLKISISKGTWSDF 70

Query: 66  SCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
           +     GD +  +  + G + +E+  +LA + GV 
Sbjct: 71  ATGDKGGDLIDLVRYIDGGTDVEACNKLAELLGVT 105


>gi|323142810|ref|ZP_08077523.1| toprim domain [Succinatimonas hippei YIT 12066]
 gi|322417455|gb|EFY08076.1| toprim domain [Succinatimonas hippei YIT 12066]
          Length = 643

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 5/59 (8%)

Query: 27 WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSF 85
             +  N     +    P H +  PS   N      +CFSC+   D    +    G  F
Sbjct: 21 LRNKGININAP-FHCLNPNHHDIHPSMSYNHQNQTVHCFSCNATYDIFGII----GLDF 74


>gi|237722689|ref|ZP_04553170.1| DNA primase [Bacteroides sp. 2_2_4]
 gi|229448499|gb|EEO54290.1| DNA primase [Bacteroides sp. 2_2_4]
          Length = 295

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
          NA    YW   P  +E+TPSF  ND+   +Y F     GD +
Sbjct: 24 NARGCQYWYLSPLREERTPSFKVNDNLNEWYDFGLSAGGDII 65


>gi|224369709|ref|YP_002603873.1| DnaG8 [Desulfobacterium autotrophicum HRM2]
 gi|224371055|ref|YP_002605219.1| DnaG11 [Desulfobacterium autotrophicum HRM2]
 gi|224371690|ref|YP_002605854.1| DnaG6 [Desulfobacterium autotrophicum HRM2]
 gi|223692426|gb|ACN15709.1| DnaG8 [Desulfobacterium autotrophicum HRM2]
 gi|223693772|gb|ACN17055.1| DnaG11 [Desulfobacterium autotrophicum HRM2]
 gi|223694407|gb|ACN17690.1| DnaG6 [Desulfobacterium autotrophicum HRM2]
          Length = 123

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 10/110 (9%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFH--CNDSK 59
            +    + +L   IP+  LI + ++     +   +G +   CP  +E    F    N + 
Sbjct: 4   KFSSQELFELRNFIPVEMLIREQLEM---PSKISEGFFRFLCPICNE----FQTAINPAT 56

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK 109
               CF C    + +  +  +    F ESV  L  + G  +P  +    +
Sbjct: 57  NLARCFRCERNFNTIDLVMTVQRIGFKESVLFLKRLMG-KVPDQNKDARQ 105


>gi|296446075|ref|ZP_06888024.1| zinc finger CHC2-family protein [Methylosinus trichosporium OB3b]
 gi|296256434|gb|EFH03512.1| zinc finger CHC2-family protein [Methylosinus trichosporium OB3b]
          Length = 384

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 18/107 (16%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDE-KTP-SFHCND 57
           M      I D+   + +  L  +      ++            CP     ++   F    
Sbjct: 1   MRLNDAQIADVKARVDLGALARELGAGLRKQGRKL-----IGSCPICGGGRSAQRFEV-Q 54

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL--------AAIA 96
             G + C  C   GD +  L    GC F  +V+RL        A  A
Sbjct: 55  GDG-WVCAVCQDGGDAIRLLQRATGCDFRAAVERLGGARELSDAERA 100


>gi|304383200|ref|ZP_07365673.1| DNA primase [Prevotella marshii DSM 16973]
 gi|304335671|gb|EFM01928.1| DNA primase [Prevotella marshii DSM 16973]
          Length = 309

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I+++   I + + +    ++   ++         W   PF  E   SF  N +   +Y F
Sbjct: 3  IQEIKT-IKLQDFLASLGHIPIKQQGNKL-----WYLSPFRTEHHASFKVNTNLNQWYDF 56

Query: 66 SCHVKGDHL 74
               G+ +
Sbjct: 57 GIGKGGNII 65


>gi|256833727|ref|YP_003162454.1| replicative DNA helicase [Jonesia denitrificans DSM 20603]
 gi|256687258|gb|ACV10151.1| replicative DNA helicase [Jonesia denitrificans DSM 20603]
          Length = 457

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/178 (8%), Positives = 55/178 (30%), Gaps = 15/178 (8%)

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
             +         +  + +   +    E ++L  ++     + +    +  + +     + 
Sbjct: 5   AAEATYPPSEGPTRARDRTPPQDIAAEQSVLGGMLISKDAIADVIAHIKGVDFYRPAHEA 64

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           ++  +   +   +      +   L +RG    L ++        L ++   A        
Sbjct: 65  IFDAVIDLYGHGEPADAITVVAELNKRGS---LDRIGGAPYIHDLIASVPTAAN------ 115

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK----TAILISILHEV-HIQIHQ 630
                A   R R + R+  E   +I Q+    + ++         + ++ +   ++ +
Sbjct: 116 -AGYYAKIVRERAIMRRLVEAGTRIVQLGYATDGDEVDDVVNNAQAEIYNITENRLSE 172


>gi|198284523|ref|YP_002220844.1| replicative DNA helicase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218665389|ref|YP_002427189.1| replicative DNA helicase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198249044|gb|ACH84637.1| replicative DNA helicase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218517602|gb|ACK78188.1| replicative DNA helicase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 457

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 55/168 (32%), Gaps = 14/168 (8%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K        E +++  L+  P   ++  + +    +     ++++  + +     +    
Sbjct: 12  KAPPHSIEAEQSVIGALLIDPETAEQVTEAVTAEDFYERRHRQIFQAISAMLGAGRAVDA 71

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L +    E L  +        L + T  A  V       +  A  +    + R+
Sbjct: 72  ITVSEWLQDH---EQLADVGGVQYLLMLANETPSAANVLAYARIVRERATLRDLIRVGRE 128

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAMIEGF 641
             E+         +G         ++L E   ++  + E Q+   EGF
Sbjct: 129 IAEL-----AYRPEG-----RQAQALLDEAESRVFHLAEGQQRAGEGF 166


>gi|255011573|ref|ZP_05283699.1| DNA primase [Bacteroides fragilis 3_1_12]
 gi|313149401|ref|ZP_07811594.1| DNA primase [Bacteroides fragilis 3_1_12]
 gi|313138168|gb|EFR55528.1| DNA primase [Bacteroides fragilis 3_1_12]
          Length = 321

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 15/101 (14%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I+D+   IPI++ +    Y    ++         W   P  +E   SF  N  +  +Y F
Sbjct: 3   IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEASFKVNTDRNLWYDF 56

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK 106
                G+ ++    L    F +S+  L       +    P 
Sbjct: 57  GAGKGGNIIALAKELY---FSDSLPYLLKR----IEEQTPN 90


>gi|197105006|ref|YP_002130383.1| replicative DNA helicase [Phenylobacterium zucineum HLK1]
 gi|196478426|gb|ACG77954.1| replicative DNA helicase [Phenylobacterium zucineum HLK1]
          Length = 496

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 18/180 (10%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S+      +      E ALL  L+   A  +     L    +     Q+L++ + +   +
Sbjct: 13  SNDAAIPHAPANIEAEQALLGALLYDNAAFERLGDNLQARHFFEPFHQRLYAAIETHIRK 72

Query: 529 QKYFLPEEIHQRL-CERGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +   P  + ++   +  F EL  ++ L   V  A   +   +         Y +A+   
Sbjct: 73  GQLAEPILLAEQFARDPAFEELGGVRYLADLVERAPPAANAPD---------YARAIYDL 123

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
                L R    I   IA     G+AE  A     + +   Q++Q+     + +GF   S
Sbjct: 124 ----ALRRDLIRIGGDIAAQAQAGDAELDAR--EQIEQAEQQLYQLAETGGVSQGFVPFS 177


>gi|288800241|ref|ZP_06405699.1| mobilizable transposon, excision protein [Prevotella sp. oral
          taxon 299 str. F0039]
 gi|288332454|gb|EFC70934.1| mobilizable transposon, excision protein [Prevotella sp. oral
          taxon 299 str. F0039]
          Length = 310

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 27 WDRRKTNAVKGDY---WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC 83
           +R+    V+          P  +E  PSF  +  K  +  ++    G  +     + GC
Sbjct: 4  LERKGIRPVRKTPTYAMYRSPLREETHPSFKVDTEKNLWIDYAEGRGGSIIDLCMRMEGC 63

Query: 84 SFIESVQRLAAIA 96
          +  E+++ L   A
Sbjct: 64 TLSEAIRCLGQNA 76


>gi|212693489|ref|ZP_03301617.1| hypothetical protein BACDOR_03006 [Bacteroides dorei DSM 17855]
 gi|212664002|gb|EEB24576.1| hypothetical protein BACDOR_03006 [Bacteroides dorei DSM 17855]
          Length = 290

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I++    IPI++ + +  +    R+       ++W   P+ +E+TPSF  N  K  +  F
Sbjct: 3  IEETR-RIPITDFLARMGHEPTSRKGN-----EWWYSAPYREERTPSFRVNILKNVWQDF 56

Query: 66 SCHVKGDHLSFLSALLGCS-FIE 87
               GD  S      G S F E
Sbjct: 57 GIGRGGDIFSLAGEFTGSSDFKE 79


>gi|313677590|ref|YP_004055586.1| DNA primase [Marivirga tractuosa DSM 4126]
 gi|312944288|gb|ADR23478.1| DNA primase [Marivirga tractuosa DSM 4126]
          Length = 323

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 74/272 (27%), Gaps = 21/272 (7%)

Query: 27  WDRRKTNAV---KGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC 83
              +  +     +  +    P  +E TPSF  +  K  +        G  +   + L   
Sbjct: 46  LKNKGIDPAEKLRNRFRYYSPIRNENTPSFDVSLEKNVWIDRGTGEGGTLVDLCTRLENL 105

Query: 84  SFIESVQRLAA------IAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARD 137
           S  E V++            +  P +D     K   +  L    +   D+     +  + 
Sbjct: 106 SVSEVVKKFNNDSFSFHQLNIAKPKIDKTSSFKILSKELLKE--KRLCDYLEE--RAIKL 161

Query: 138 KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT 197
                 ++E     ++   F +G       +++  +  +    +  +    +     +  
Sbjct: 162 PVAKRMVNEYHYSLNSRNYFGIGI-----DNVKGGVELRNKYFKGTLGPKAISYFKGNNN 216

Query: 198 SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNY 257
               F   +      S  +        +    +   L + E +L          F   + 
Sbjct: 217 KILVFEGFIDLLSHFSYSKKEQTSSHIIILNSTNNTLAAKEQVLQLPKNMEVFLFLDRDE 276

Query: 258 LQKSIRKDVRRNSS---SFIILVEGYMDVLSL 286
             K   +  +           + +GY D   +
Sbjct: 277 AGKRSGQVFQNLDRKIFDMSYIYKGYNDYNVM 308


>gi|326383845|ref|ZP_08205529.1| replicative DNA helicase [Gordonia neofelifaecis NRRL B-59395]
 gi|326197304|gb|EGD54494.1| replicative DNA helicase [Gordonia neofelifaecis NRRL B-59395]
          Length = 737

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/174 (10%), Positives = 53/174 (30%), Gaps = 15/174 (8%)

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
           + P       +   G+   +    E ++L  ++     + +  + +    +     Q ++
Sbjct: 9   REPDLPPEPPTEEFGRQPPQDQQAEQSVLGGMMLSKDAIADVLERIRPGDFYKPAHQAVY 68

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             +   +   +      +   L  +G      +L +      L +  +          Y 
Sbjct: 69  DAILELYGRGEPADAVTVAAELERKG------ELRKVGGAPYLHTLISTVPTAANAGYYA 122

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628
           + +      + + R+  E   +I Q        +  AE      + ++EV  + 
Sbjct: 123 EIVG----EKSILRRLVEAGTRIVQYGYAGADGQDVAEVVDRAQAEIYEVTERR 172


>gi|239942702|ref|ZP_04694639.1| putative replicative DNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239989161|ref|ZP_04709825.1| putative replicative DNA helicase [Streptomyces roseosporus NRRL
           11379]
 gi|291446168|ref|ZP_06585558.1| replicative DNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291349115|gb|EFE76019.1| replicative DNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 491

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 71/223 (31%), Gaps = 26/223 (11%)

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
               S   R  +K    R  +G  +     +    ++  +    E ++L  ++     + 
Sbjct: 19  RLPVSRQRRGDRKGREDRHDRGSDEAWDSGAPSFERVPPQDVDAEQSVLGGMLLSKDAIA 78

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           E  + +    +     + +++ +   + + +   P  +   L +RG      ++ +    
Sbjct: 79  EVVEVIKGHDFYRPAHETVFTAILDLYAKGEPADPITVAAELVKRG------EITKVGGA 132

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTAI 616
             L +             Y + +      R + R+  E   +I Q+    +    E    
Sbjct: 133 PYLHTLVQSVPTAANASYYAEIVH----ERAVLRRLVEAGTKITQMGYAADGDVDEIVNS 188

Query: 617 LISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646
             + ++ V  Q                ++  EA+    G+M+G
Sbjct: 189 AQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 231


>gi|332653218|ref|ZP_08418963.1| toprim domain protein [Ruminococcaceae bacterium D16]
 gi|332518364|gb|EGJ47967.1| toprim domain protein [Ruminococcaceae bacterium D16]
          Length = 310

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 5/119 (4%)

Query: 68  HVKGDHLSFLSALLGCSFIESVQRL---AAIAGVPLPVVDPKIEKKEKIQT--DLIRLIE 122
            + GD ++FL      SF E+V+ L      A    PV  P+  K+++ +    L     
Sbjct: 63  GIGGDAITFLQRFYNKSFPEAVEYLLTWHGRARDSPPVSTPRQTKEKEEKVPFTLPPANV 122

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
                F +  K     ++     E G+     +     +    +        Q+G  + 
Sbjct: 123 DYRRVFAYLRKRGIAPQVIRGFVEAGLLYEDAQHHNCVFVGRDQSGAPVFANQRGTYDW 181


>gi|325264189|ref|ZP_08130921.1| toprim domain protein [Clostridium sp. D5]
 gi|324030673|gb|EGB91956.1| toprim domain protein [Clostridium sp. D5]
          Length = 327

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 46  HDEKTPSFHCNDSKGFYYCFSCHVKG-DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD 104
           HD    S   ++ K  +  +S  + G   L +L  + G SF+E+V+ +A  A +  PV  
Sbjct: 45  HD----SLKISNGKWMW--WSRGIGGRSALDYLIKVEGYSFMEAVEIIAGQAAITPPVYV 98

Query: 105 PKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD 164
           P+ E++ K +  L  L +       + L    D+ +  +    G      +     +   
Sbjct: 99  PQKEEQRKKKLLLPELSQYPEQVIQYLLNRGIDREIIDFCINTGRICETRQYHNAVFIGK 158

Query: 165 SR 166
             
Sbjct: 159 DS 160


>gi|160943745|ref|ZP_02090976.1| hypothetical protein FAEPRAM212_01240 [Faecalibacterium
          prausnitzii M21/2]
 gi|158444919|gb|EDP21922.1| hypothetical protein FAEPRAM212_01240 [Faecalibacterium
          prausnitzii M21/2]
          Length = 633

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 15/93 (16%)

Query: 1  MNYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          M Y ++ I        + + + GQ     R                HD    S     +K
Sbjct: 1  MYYTQEQIDRA-NQADLVSFLQGQGEQLTRAGNEYRWKR-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
            +Y  S    G  + F+    G SF E+V+ L
Sbjct: 49 --WYRHSQSKGGTPIDFVMEFYGKSFTEAVEML 79


>gi|300859447|ref|YP_003784430.1| replicative DNA helicase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686901|gb|ADK29823.1| Replicative DNA helicase [Corynebacterium pseudotuberculosis FRC41]
 gi|302207126|gb|ADL11468.1| Replicative DNA helicase [Corynebacterium pseudotuberculosis C231]
 gi|302331686|gb|ADL21880.1| Replicative DNA helicase [Corynebacterium pseudotuberculosis 1002]
 gi|308277379|gb|ADO27278.1| Replicative DNA helicase [Corynebacterium pseudotuberculosis I19]
          Length = 492

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 58/197 (29%), Gaps = 21/197 (10%)

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
           Y  +      +    +R   S   + +        E  +L  ++  P  + E  + L   
Sbjct: 29  YAPRTPNREGRSYSPRRQESSPTSEFRQPPHDVEAEQGVLGAMLLSPQTVIEIVEVLTPE 88

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLKQLDRQVR 558
            +     Q ++S +   F + K   P  +  RL                 L+  +     
Sbjct: 89  DFYRPAHQLIYSAMIDLFSDNKEIDPVIVAARLDRNNDLERVGGAPYLHTLISSVPTAAN 148

Query: 559 DAGLWSATTEANIV----DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                    E  ++    D      Q          +    +  ++++ +V  KG AE  
Sbjct: 149 ARYYAEIVAEKALLRQLVDAGTRVVQLGYEGTEGAEIESVIDLAQQEVFKVNKKGSAEDY 208

Query: 615 AIL-------ISILHEV 624
           A+L       +  L ++
Sbjct: 209 AVLGDIIGPTMEELDDI 225


>gi|330901330|gb|EGH32749.1| hypothetical protein PSYJA_28831 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 819

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 10  DLLIHI--PISNLIGQYVDWDRRKTNAVKG-DYWACCPFHDEKTP-SFHCNDSKGFYYCF 65
            +       I  ++   V W         G +Y A  P   +K   S   + SKG +  F
Sbjct: 14  QVKSAALRNIDKVL---VQWLPNGKRVDGGKEYTAPNPTRTDKRAGSLKISISKGTWSDF 70

Query: 66  SCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
           +     GD +  +  + G + +E+  +LA + GV 
Sbjct: 71  ATGDKGGDLIDLVRYIDGGTDVEACNKLADLLGVT 105


>gi|299830337|ref|YP_003734552.1| DNA replication helicase [Kryptoperidinium foliaceum]
 gi|297385039|gb|ADI40337.1| DNA replication helicase [Kryptoperidinium foliaceum]
          Length = 461

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 52/176 (29%), Gaps = 19/176 (10%)

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
             S  +         L E  +L  LI +   L+   Q L    +     QKL+  L    
Sbjct: 7   TSSKTLIQNSLPHNFLAEKQILSCLIRNGETLELVKQNLIVEAFYFKNHQKLYQSLLDME 66

Query: 527 VEQKYFLPEEIHQRLCERGFGEL---LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                     +   L  RG       +K L   V  +  +S  TE   +   +  ++ L 
Sbjct: 67  ENNFPIDILTVAGFLQNRGIISKIGGIKVLLDLVNQSITFSYLTEYIQIVKEKFLKRCLI 126

Query: 584 ----------------LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
                           L      + R+  ++  +I  V     A+    L + L E
Sbjct: 127 KFGYKVIHSGYITSGSLETNLTKMERELFQLTNEIRTVPTANTAQVLNDLFAELKE 182


>gi|239930207|ref|ZP_04687160.1| replicative DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291438552|ref|ZP_06577942.1| replicative DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291341447|gb|EFE68403.1| replicative DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 491

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 64/188 (34%), Gaps = 26/188 (13%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++  +    E ++L  ++     + +  + L    +     + +++ +   + + +   P
Sbjct: 54  RMPPQDLEAEQSVLGGMLLSKDAIADVVEILKGHDFYKPAHETVYTAILDVYAKGEPADP 113

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I   L +RG      ++++    + L +             Y + +      R + R+
Sbjct: 114 ITIASELTKRG------EINKVGGASYLHTLVQTVPTAANAAYYAEIVH----ERAVLRR 163

Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638
             E   +I Q+    +    E      + ++ V  Q                ++  EA+ 
Sbjct: 164 LVEAGTRITQMGYAADDDVDEIVNRAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIG 223

Query: 639 EGFGKMSG 646
              G+M+G
Sbjct: 224 SRSGEMTG 231


>gi|268796567|ref|YP_003310962.1| DnaB domain protein helicase [Sebaldella termitidis ATCC 33386]
 gi|268616665|gb|ACZ11031.1| DnaB domain protein helicase domain protein [Sebaldella termitidis
           ATCC 33386]
          Length = 673

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 68/563 (12%), Positives = 154/563 (27%), Gaps = 66/563 (11%)

Query: 52  SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA---GVPLPVVDPKIE 108
           SF  N     + CFS    G+  + L  L   S  E++  L        + +       E
Sbjct: 52  SFSINTKTNLFKCFSTGKTGNIYNLLLELKH-SHDEAIDLLNEFLEQKNIQIKKSGQSDE 110

Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS 168
           +    +                                  +    +          ++ +
Sbjct: 111 RGSPEEESKKD----------------------NEGIPVKMSFKPLYDEGAREISKNKKN 148

Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
           L          +EK     +         +Y             +   +  +    +   
Sbjct: 149 LFTSRGISREVQEKYKLGYISKGFKEIVKAYKNQYGEKSPFAEKASKNLDNYKY-LIPVS 207

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
           +   +L S  + +  K   L  +        K   +      +  I + EG  D LSL +
Sbjct: 208 DDYFFLRSDNSDVKPKEHKLTGY------ASKLFNERYLNMKNEIIFICEGIFDSLSLEE 261

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
            G +    S+       Q +L+ +L  + +     D+     A     L          V
Sbjct: 262 LGYK----SISLGGVTNQNKLIERLHEKNIFVLAFDNDDSGKAATKSLLEKIQSKGQISV 317

Query: 349 NFVLLSRGEDPDSFIRCYGK----------TAFEKLIVESLPLVDMLWKRETENRSFNTP 398
            F    + +D + ++    K           + +    +       +++ E   +   T 
Sbjct: 318 IFEFDEKYKDINEYLIADRKGLENKLSEFINSLDDYTEKLKKPDLTIYRLEEYLKELETN 377

Query: 399 DERAELEIHLKNCINHIKDQKLRYYY-SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            E+  ++ +     +++        Y   A+    +  F   +T+      Y        
Sbjct: 378 KEKPAIKTNFGPLDDYLSGGLHTGLYVIGAVSSLGKTTFVNQLTDDIAKNGYDVLFFSLE 437

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
             +        S  +  K   K     A           I   ++  +AD      EL  
Sbjct: 438 MGRNEIISKSLSREMFRKAKDKSLPLSAL---------EIQNLRFHGIADQMKKQKEL-- 486

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L   +       K+         + E GF   + ++  ++ +    + T    ++D  Q 
Sbjct: 487 LREAIKEYGNSAKHVS-------IIEGGFDTGVNEIKEKIENYISMNETKPIVVIDYLQI 539

Query: 578 YQQALALYKRFRLLSRQKEEIEK 600
            +Q+   +   + +     +++K
Sbjct: 540 LKQSSNFFSDKQAVDHNITQLKK 562


>gi|300780224|ref|ZP_07090080.1| replicative DNA helicase DnaB [Corynebacterium genitalium ATCC
           33030]
 gi|300534334|gb|EFK55393.1| replicative DNA helicase DnaB [Corynebacterium genitalium ATCC
           33030]
          Length = 490

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 55/174 (31%), Gaps = 12/174 (6%)

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
             R   + G      +  L + +        E  ++  ++  P  + +  +EL +  +  
Sbjct: 31  GYRSNRRNGRGFTSEREDLSEYRQPPHDRKAEQGVIGAMLLSPNTVTDVIEELREEDFYF 90

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
              Q ++  +   + +        +  RL   G      QL+R      L +  +E    
Sbjct: 91  PAHQLIYQAILDLYSQGSQIDVLIVSGRLDRMG------QLERAGGAPYLHTLISEVPTS 144

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI--SILHEV 624
              + Y   +A     +   RQ  +   ++AQ+   G        +      E+
Sbjct: 145 ANARYYADIVA----EKSTLRQLVDAGTRVAQLGYDGGEGMEIEALVDRAQQEI 194


>gi|291297673|ref|YP_003508951.1| replicative DNA helicase [Stackebrandtia nassauensis DSM 44728]
 gi|290566893|gb|ADD39858.1| replicative DNA helicase [Stackebrandtia nassauensis DSM 44728]
          Length = 474

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 60/220 (27%), Gaps = 28/220 (12%)

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             R                   +      +   +  + E ++L  ++     + +  + L
Sbjct: 7   ANRKGGAQQSRAGDYPDEPPPEEGGHEFERTPPQDVMAERSVLGGMLLSKDAIADVVEIL 66

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLKQLDR 555
               +       ++  +   +   +      +   L + G             L+  +  
Sbjct: 67  KTNDFYKPAHATIFDVICDKYARGEPADAVTMVAALNDLGELGKVGGAPYLHTLISSVPT 126

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL--------SRQKEEIEKQIAQVTA 607
               A      +E      R   ++ +    R   L         R  +++     Q   
Sbjct: 127 AANAAYYARIVSE------RAILRRLIEAGTRIVQLGYGTAAGGGRDVDDLVDLAQQAVY 180

Query: 608 KGEAEKTAILISILHEVHIQIH-QIESQEAMIEGFGKMSG 646
                + +   ++L E+   +   ++  EA+ E  G M+G
Sbjct: 181 DVTERRVSEDFAVLSEL---LQPTLDEIEAVGESAGAMTG 217


>gi|241664693|ref|YP_002983053.1| hypothetical protein Rpic12D_3114 [Ralstonia pickettii 12D]
 gi|240866720|gb|ACS64381.1| conserved hypothetical protein [Ralstonia pickettii 12D]
          Length = 933

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/413 (12%), Positives = 117/413 (28%), Gaps = 53/413 (12%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M    D+   L   I + +L  + +D  R   N          P H + +PS      KG
Sbjct: 9   MR---DWFDQLKGGIDLHDL-AERLDLRRTAANGNYH-----SPHHADSSPSLSIF-EKG 58

Query: 61  F-YYCFSCHVKGDHLSFLS----ALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEKI 113
             +  +S  V G  +  +      +   + +E+ + L    G+  P+P       +K   
Sbjct: 59  RAWKDWSQDVGGSCIDLVLHCRPEVE--TPLEAAKLLGEWYGIPAPVPAQSSLPARKSTE 116

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS-RYSLREH 172
                       ++     +   +  + Y       ++ +    + G    +   S +  
Sbjct: 117 ------------EYIAERCRANPEPAVAYLASRGIAEAVSRRAIQTGALGWNTWNSNKVP 164

Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR------GQVIAFGGRTLS 226
             + G                       R+ +  +     ++      G       R L 
Sbjct: 165 AGEPGHGGPAAAFVVRAAASAAVVAVDLRYADATLNGNVKTQCQGEKLGHGWTSDWRRLQ 224

Query: 227 KGESVKYLNSPETILFHKGKNLY--NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284
           +  +V  + SP   L  +  +L       A+       + D        +++   + D +
Sbjct: 225 RARTVYIVESPINALSVECCHLPEGCAAFAIRGTANVDKIDWSFLRDKRVLIALDHTDAV 284

Query: 285 -----------SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYK 333
                      +  +       + +G+ L + Q     +    ++     D+  +R  + 
Sbjct: 285 NERTGQRPGLAAAWKLSEVLTAAGIGSVLVDMQDWEEGEDINDVLKARGADELTVRMKHI 344

Query: 334 AIDLVLCHLIPGNRVN--FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
              L+      G R      +     D   + R   K  F   + +     D 
Sbjct: 345 EPWLIPGMPGDGERQKGTRRIFLPAHDFSVYWRFRVKEDFTHYVQKYKDQEDD 397


>gi|282721335|gb|ADA83784.1| gp60 [Mycobacterium phage SkiPole]
          Length = 171

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
            C  H+E  PS   +     + C +C  +G+ ++ L      ++  +V+R+
Sbjct: 32 CLCWAHEESRPSAAVSYQLNAFNCLACSARGNAITLLMTYEEVNYQTAVERV 83


>gi|302552662|ref|ZP_07305004.1| replicative DNA helicase [Streptomyces viridochromogenes DSM 40736]
 gi|302470280|gb|EFL33373.1| replicative DNA helicase [Streptomyces viridochromogenes DSM 40736]
          Length = 492

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 64/193 (33%), Gaps = 26/193 (13%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           S    ++  +    E ++L  ++     + +  + L    +     + ++  +   + + 
Sbjct: 50  SPAFERVPPQDIDAEQSVLGGMLLSKDAIADVVEILKGHDFYKPAHETIYQAVLDVYAKG 109

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +   P  I   L +RG      ++++    + L +             Y + +      R
Sbjct: 110 EPADPITIAAELTKRG------EINKVGGASYLHTLVQTVPTAANAAYYAEIVH----ER 159

Query: 590 LLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIES 633
            + R+  E   +I Q+    +    E      + ++ V  Q                ++ 
Sbjct: 160 AVLRRLVEAGTRITQMGYAADDDVDEIVNRAQAEVYAVTEQRTSEDYLPLGDIMEGALDE 219

Query: 634 QEAMIEGFGKMSG 646
            EA+    G+M+G
Sbjct: 220 IEAIGSRSGEMTG 232


>gi|119718874|ref|YP_925839.1| DnaB domain-containing protein [Nocardioides sp. JS614]
 gi|119539535|gb|ABL84152.1| DnaB domain protein helicase, C-terminal domain protein
           [Nocardioides sp. JS614]
          Length = 824

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 60/195 (30%), Gaps = 13/195 (6%)

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
            +TE    G          D         + +    +   +    E ++L +++     +
Sbjct: 2   SVTEQGPRGLPEPPIDDWGDGPAAYAPGERPTSPGDRTPPQDMAAEQSVLGSMLISKDAI 61

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            +  + L  + +     + +   +   +   +      +   L  RG      +L R   
Sbjct: 62  ADVAEVLRGVDFYRPSHETIHDAIIDLYGRGEPVDMVTVAAELQRRG------ELQRIGG 115

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTA 615
              L + +    I      Y + +    R + + R+  +   +I Q+   GE    +   
Sbjct: 116 APYLHTLSANVPIAANAGYYAEIV----REKAILRRLVDAGTKIVQIGYAGEGQVDDIVD 171

Query: 616 ILISILHEVHIQIHQ 630
              + ++++  +   
Sbjct: 172 TAQAEVYKITDRRAA 186


>gi|312115501|ref|YP_004013097.1| hypothetical protein Rvan_2789 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220630|gb|ADP71998.1| protein of unknown function DUF927 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 1019

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 20/124 (16%)

Query: 23  QYVDWDRRKTNAVKGDYWAC------------CPF--HDEKTPSFHCNDSKGFYYCFSCH 68
           + V  D          +               CPF  HD+K PS+  +  K  ++C  C 
Sbjct: 36  ESVKADLAGRELDILRWIGIAWPPARRQTHIHCPFPGHDDKNPSWRWDTRKKAWFCSQCG 95

Query: 69  VKGDHLSFLSALLGCSFIESV-----QRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
             GD L  +  + G SF +++     + L      P P    +   +++     ++    
Sbjct: 96  -GGDILHAVERMKGLSFQKALDLIETELLGRAYEAPKPERKTRRISQQQPAERALQNRAE 154

Query: 124 ATDF 127
           A  F
Sbjct: 155 AEAF 158


>gi|312113828|ref|YP_004011424.1| hypothetical protein Rvan_1051 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218957|gb|ADP70325.1| protein of unknown function DUF927 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 1019

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 20/124 (16%)

Query: 23  QYVDWDRRKTNAVKGDYWAC------------CPF--HDEKTPSFHCNDSKGFYYCFSCH 68
           + V  D          +               CPF  HD+K PS+  +  K  ++C  C 
Sbjct: 36  ESVKADLAGRELDILRWIGIAWPPARRQTHIHCPFPGHDDKNPSWRWDTRKKAWFCSQCG 95

Query: 69  VKGDHLSFLSALLGCSFIESV-----QRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
             GD L  +  + G SF +++     + L      P P    +   +++     ++    
Sbjct: 96  -GGDILHAVERMKGLSFQKALDLIETELLGRAYEAPKPERKTRRISQQQPAERALQNRAE 154

Query: 124 ATDF 127
           A  F
Sbjct: 155 AEAF 158


>gi|253573108|ref|ZP_04850498.1| DNA primase [Bacteroides sp. 1_1_6]
 gi|256842097|ref|ZP_05547602.1| DNA primase [Parabacteroides sp. D13]
 gi|251837302|gb|EES65403.1| DNA primase [Bacteroides sp. 1_1_6]
 gi|256736413|gb|EEU49742.1| DNA primase [Parabacteroides sp. D13]
          Length = 321

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I+D+   IPI++ +    Y    ++         W   P  +E  PSF  N  +  +Y F
Sbjct: 3  IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56

Query: 66 SCHVKGDHL 74
               G+ +
Sbjct: 57 GAGKGGNLI 65


>gi|301308737|ref|ZP_07214689.1| DNA primase [Bacteroides sp. 20_3]
 gi|300833261|gb|EFK63879.1| DNA primase [Bacteroides sp. 20_3]
          Length = 321

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I+D+   IPI++ +    Y    ++         W   P  +E  PSF  N  +  +Y F
Sbjct: 3  IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56

Query: 66 SCHVKGDHL 74
               G+ +
Sbjct: 57 GAGKGGNLI 65


>gi|228471375|ref|ZP_04056176.1| putative mobilizable transposon, excision protein [Porphyromonas
           uenonis 60-3]
 gi|228306876|gb|EEK15989.1| putative mobilizable transposon, excision protein [Porphyromonas
           uenonis 60-3]
          Length = 314

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 48/136 (35%), Gaps = 12/136 (8%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           ++ L   IPI++ +      +  K       Y A  P+ ++   S   +  +  ++ +  
Sbjct: 8   LQHLKA-IPIADYLHTTYGIEPAKRYNGYALYHA--PYREDFNASMKVDFWENLWHDYGT 64

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAI---------AGVPLPVVDPKIEKKEKIQTDLI 118
              G  +  +  + GCS  E+++ LA                 +   + E++   +  ++
Sbjct: 65  GQGGSIIDLVMRMQGCSAYEAMKHLAGKRETVIAPSSFHREDHIEHRRDEQRANNRRHIL 124

Query: 119 RLIEVATDFFHHSLKN 134
            + +         L+ 
Sbjct: 125 SISDELPSHLQRYLRE 140


>gi|315224430|ref|ZP_07866260.1| replicative DNA helicase DnaB [Capnocytophaga ochracea F0287]
 gi|314945633|gb|EFS97652.1| replicative DNA helicase DnaB [Capnocytophaga ochracea F0287]
          Length = 525

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 67/202 (33%), Gaps = 30/202 (14%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
              Q SL +GKL  +    E A+L  ++     + +    L    +   + Q ++  +F 
Sbjct: 20  SRTQVSLERGKLPPQDLNLEEAILGAMLIDKKGVDDVIDILNPEVFYKKQHQLIYQAIFE 79

Query: 525 DFVEQKYFLPEEIHQRLCERG----------FGELLKQL---------DRQVRDAGLWSA 565
            F E +      + ++L + G             L +++          R +    +   
Sbjct: 80  LFNESEAIDLLTVAEQLRKNGNLEAVGGEFYLINLTQRVSSSANVEFHARIILQKFIKRK 139

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
             E +   +   Y     ++       ++  E+ +   + +++   +     +  + ++ 
Sbjct: 140 LIEISSEIIEDAYDDTRDVFDSLDSAEQKLYEVTQGNLKRSSEAAGDLVIKALKKIQDLS 199

Query: 626 IQIHQIESQEAMIEGF-GKMSG 646
            +           +GF G  SG
Sbjct: 200 NK----------KDGFSGVPSG 211


>gi|282855408|ref|ZP_06264730.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
 gi|282586756|gb|EFB92002.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
          Length = 819

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 22/97 (22%)

Query: 21  IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79
           +G  V    R        +   C P   E  PSF  +  KG ++    +  G        
Sbjct: 17  VGPRVGKLRRS-----DDELLMCSPLRKEHNPSFTVSLEKGCWHDLGTNEGGT------- 64

Query: 80  LLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116
                    +  LA   GVP P          + + D
Sbjct: 65  ---------LTELAGRLGVPAPEYAGGGASSSRKEQD 92


>gi|150004005|ref|YP_001298749.1| DNA primase [Bacteroides vulgatus ATCC 8482]
 gi|149932429|gb|ABR39127.1| DNA primase [Bacteroides vulgatus ATCC 8482]
          Length = 318

 Score = 54.9 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I++    I I++ +    Y    ++  N      W   PF +E   SF  N  +  +Y 
Sbjct: 2  TIEEAK-RIRIADYLHSLGYSPVKQQGVNL-----WYKSPFREESEASFKVNTEREQWYD 55

Query: 65 FSCHVKGDHLSF---LSALLGCSFIESVQRLAAI 95
          F     G+ ++    L A     +I  ++R+A  
Sbjct: 56 FGLGKGGNIIALAAHLYATDHVPYI--LKRIAEQ 87


>gi|312126681|ref|YP_003991555.1| zinc finger chc2-family protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776700|gb|ADQ06186.1| zinc finger CHC2-family protein [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 361

 Score = 54.9 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 99/361 (27%), Gaps = 45/361 (12%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE---KTPSFHCNDSKGFYYCF 65
           +D+L  + I           +R            CP+ DE   +    + N +K  + C 
Sbjct: 10  QDVLDRVRI-------TVLKQRGNELN-----CLCPYCDEPHRREGHLYINIAKDTFICH 57

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAI--------AGVPLPVVDPKIEKKEKIQTDL 117
            C  +G+ L   + L      E+ + LA            +   +   + + K       
Sbjct: 58  KCGRQGNALQLYALLTNQDTKEAYKELAQEIASGSQRLHHIQYKLQTREAQPK------Y 111

Query: 118 IRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
           I   EV    +   LK    +++    L  RG+   AI +         +    E  R  
Sbjct: 112 IAPPEVRDKVYREFLKLLTLNEKHKADLLRRGLSETAIRVKGYKTLFVEKEKRLEICRTL 171

Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
                 +           +             P+++  GQ+I    R      S     S
Sbjct: 172 QTKGYSLEGIPGFFKHKTTGEWDFIPYQGYAIPVKNLNGQIIGLQVRMDEPCLSKYRWFS 231

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM--DVLSLCQAGVQNV 294
             +          N                   S   + + EG +  DV +     +   
Sbjct: 232 SSSSKDVGTPAEANLH------------VTGSCSDDVVYITEGVLKADVAAYLSGKMFIG 279

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID-LVLCHLIPGNRVNFVLL 353
           +  + +   +    L       ++L FD D    +     ++ +       G +   +  
Sbjct: 280 LPGVSSCHKQLIQTLQQLQPKLVILAFDMDYREKKEVAYNLEKIKSMLAENGFKFKQIEW 339

Query: 354 S 354
            
Sbjct: 340 D 340


>gi|294813707|ref|ZP_06772350.1| Replicative DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294326306|gb|EFG07949.1| Replicative DNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 497

 Score = 54.9 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 68/225 (30%), Gaps = 28/225 (12%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
               +  G  R  + +   R +             +          E ++L  ++     
Sbjct: 25  PVSRQRRGDQRSGRDDQHDRGRDSEGWDGGSPGFERVPPQDLD--AEQSVLGGMLLSKDA 82

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           + +  + L    +     + +++ +   + + +   P  +   L +RG      ++ R  
Sbjct: 83  IADVVEVLKGHDFYRPAHETVYTAILDLYAKGEPADPITVAAELVKRG------EITRVG 136

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKT 614
             + L +             Y + +      R + R+  E   +I Q+    +    E  
Sbjct: 137 GASYLHTLVQSVPTAANASYYAEIVH----ERAVLRRLVEAGTKITQMGYAADGDVDEIV 192

Query: 615 AILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646
               + ++ V  Q                ++  EA+    G+M+G
Sbjct: 193 NSAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 237


>gi|254391462|ref|ZP_05006664.1| replicative DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|326442130|ref|ZP_08216864.1| replicative DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197705151|gb|EDY50963.1| replicative DNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 494

 Score = 54.9 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 68/225 (30%), Gaps = 28/225 (12%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
               +  G  R  + +   R +             +          E ++L  ++     
Sbjct: 22  PVSRQRRGDQRSGRDDQHDRGRDSEGWDGGSPGFERVPPQDLD--AEQSVLGGMLLSKDA 79

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           + +  + L    +     + +++ +   + + +   P  +   L +RG      ++ R  
Sbjct: 80  IADVVEVLKGHDFYRPAHETVYTAILDLYAKGEPADPITVAAELVKRG------EITRVG 133

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKT 614
             + L +             Y + +      R + R+  E   +I Q+    +    E  
Sbjct: 134 GASYLHTLVQSVPTAANASYYAEIVH----ERAVLRRLVEAGTKITQMGYAADGDVDEIV 189

Query: 615 AILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646
               + ++ V  Q                ++  EA+    G+M+G
Sbjct: 190 NSAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 234


>gi|192823958|ref|YP_001994604.1| gp57 [Mycobacterium phage Jasper]
 gi|190610553|gb|ACE80072.1| gp57 [Mycobacterium phage Jasper]
          Length = 180

 Score = 54.9 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91
            C  H+E  PS   +     + C +C  +G+ ++ L      ++  +V+R
Sbjct: 32 CLCWAHEESRPSAAVSYQLNAFNCLACSARGNAITLLMTYEEVNYQTAVER 82


>gi|332661855|ref|YP_004451325.1| hypothetical protein Halhy_6636 [Haliscomenobacter hydrossis DSM
           1100]
 gi|332337352|gb|AEE54452.1| hypothetical protein Halhy_6636 [Haliscomenobacter hydrossis DSM
           1100]
          Length = 300

 Score = 54.9 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 34  AVKGDYWACCPFHDEKTPSFHCN--DSKGFYYCFSCHVKGDHLSFLSALLGCSFI-ESVQ 90
               +YW   PF  E   SFH +    K  +  F     G  + F+    G   + E++Q
Sbjct: 27  KGGKEYWYLSPFRQEMIASFHTSFLGGKWIWNDFG-DTGGTVIDFVMRYKGYHHVQEALQ 85

Query: 91  RLAA--IAGVPLPVVDPKIEKKEKIQTDLIR 119
            L A   AG+         ++++  Q  L  
Sbjct: 86  FLEAIFKAGMAP----SAAQEEKSPQGALFD 112


>gi|224373110|ref|YP_002607482.1| replicative DNA helicase [Nautilia profundicola AmH]
 gi|223589599|gb|ACM93335.1| replicative DNA helicase [Nautilia profundicola AmH]
          Length = 466

 Score = 54.9 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 55/158 (34%), Gaps = 11/158 (6%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL-- 541
           E  +L  ++    I ++    L  + +     Q L++ +   + +        +   L  
Sbjct: 9   ERGILSAILFDGKIYEDVAAILKPLDFYLPFHQNLFAAMEDLYKKDYPIDEIFLKDHLVK 68

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--FRLLSRQKEEIE 599
             +   EL  ++        + +   E   + V++         K+       +  EE+E
Sbjct: 69  QNKFDEELFLEILGTAPIEAVEAYAREIKDLAVKRELIHLSNEIKKTVLEDDKKAIEEVE 128

Query: 600 K------QIAQVTAKGEAEKTAILISILHE-VHIQIHQ 630
           +       IA     G+ +++  +I+   E +  QI +
Sbjct: 129 EIQGKLFSIATSNLAGDFKESEAIINDTLEYIKTQISK 166


>gi|86141541|ref|ZP_01060087.1| DNA primase [Leeuwenhoekiella blandensis MED217]
 gi|85832100|gb|EAQ50555.1| DNA primase [Leeuwenhoekiella blandensis MED217]
          Length = 284

 Score = 54.9 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 32 TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91
           N  K  ++   P   E   SF  +     +Y       G+ +  +  L   +  E++  
Sbjct: 29 RNTEKEAWF-LSPLRSETQASFKVSKKLNCWYDHGLGKGGNCIDLICELQNIAVREALAI 87

Query: 92 LAA 94
          LA 
Sbjct: 88 LAQ 90


>gi|303236692|ref|ZP_07323273.1| mobilizable transposon, excision family protein [Prevotella disiens
           FB035-09AN]
 gi|302483196|gb|EFL46210.1| mobilizable transposon, excision family protein [Prevotella disiens
           FB035-09AN]
          Length = 327

 Score = 54.9 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 88/309 (28%), Gaps = 37/309 (11%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I+++   I + + +    +    ++         W   PF  E+  SF  N     +Y F
Sbjct: 21  IQEIKT-IKLQDFLASLGHTPIKQQGNKL-----WYLSPFRTERQASFKVNTEINQWYDF 74

Query: 66  SCHVKGDHLSF---LSALLGCSFIESVQRLAAIA-----GVPLPVVDPKIEKKEKIQTDL 117
                G+ ++    L      S++  ++++          +P+P    + ++  +   +L
Sbjct: 75  GVGKGGNIIALAEVLYKSSDISYL--IRQIERNVPSCVHSLPIPYTKKESQQHAQSFENL 132

Query: 118 IRL---IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
             L         + H    +               +           +           +
Sbjct: 133 KILPLTHPALIRYLHERCIDMEVATAVCNELHYDSNGKHYFGIGFPNSAGGYEIRNPFFK 192

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
                ++  I      +       ++ F + L F        +     RT    +    L
Sbjct: 193 GSIAPKD--ISVFYANEPKKICFLFEGFMDFLSFMTLRKLKNLQ----RTGLSQQDYIVL 246

Query: 235 NSPETILFHKGKNLYNFFG---------ALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285
           NS    +    + L ++           A     K + K++ R+      L   + D+  
Sbjct: 247 NSVSN-IHKVTEKLSHYDSIQCYLDNDDAGRNAYKQLSKELSRSVLDSSSLYSDFKDLND 305

Query: 286 LCQAGVQNV 294
              A  ++ 
Sbjct: 306 YLCAEFKHS 314


>gi|254384808|ref|ZP_05000145.1| replicative DNA helicase [Streptomyces sp. Mg1]
 gi|194343690|gb|EDX24656.1| replicative DNA helicase [Streptomyces sp. Mg1]
          Length = 491

 Score = 54.9 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 62/223 (27%), Gaps = 20/223 (8%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            +        G    +    +D+               ++  +    E ++L  ++    
Sbjct: 16  DRLPARPRRNGEGRGRGDDQQDRGREGGSWDGGGGGFERVPPQDLDAEQSVLGGMLLSKD 75

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            + +  + L    +     + ++  +   + + +   P  +   L  RG    + ++   
Sbjct: 76  AIADVVEVLKGHDFYRPSHETIYQAILDLYAKGEPADPITVGAELTRRG---EISKVGGA 132

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                L  +   A   +         A+ +R      +      Q+         E    
Sbjct: 133 SYLHTLVQSVPTAANAEYYAEIVHERAVLRRLVAAGTKIT----QMGYAADGDVDEIVNS 188

Query: 617 LISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646
             + ++ V  Q                ++  EA+    G+MSG
Sbjct: 189 AQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGQMSG 231


>gi|330890160|gb|EGH22821.1| hypothetical protein PSYMO_15566 [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 966

 Score = 54.9 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 10  DLLIHI--PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFS 66
            +       I  ++  ++     K      +Y A  P   +K   S   + SKG +  F+
Sbjct: 14  QVKSAALRNIDKVLAHWLP--NGKRVDGGKEYTAPNPTRTDKRAGSLKISISKGTWSDFA 71

Query: 67  CH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
                GD +  +  + G + +E+ ++LA + GV 
Sbjct: 72  TGDKGGDLIDLVRYIDGGTDVEACKKLADLLGVT 105


>gi|123470155|ref|XP_001318285.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121901040|gb|EAY06062.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2416

 Score = 54.9 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 83/263 (31%), Gaps = 7/263 (2%)

Query: 373  KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
            +     L       + E         +E   L+  ++     IK           ++++L
Sbjct: 801  EQTENELTQQIEEIEEEKSEELKKKNEEIERLQNEIEELNKEIKSLTEE---IDDLQEKL 857

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK-PSLREAALLLTL 491
            +   ++         +  + + +  D+     RL   + V    +K     +EAA    L
Sbjct: 858  ENAKKEIQELQEYAEKSQENDKQTIDELKEKLRLANETKVTDSDTKVLVESKEAAEQKVL 917

Query: 492  INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
            +    I   + +        + E +     + +   E +    E     L +       +
Sbjct: 918  LLEKEISDLKIEIEDLKSVIDEENE---QKVSNTEAENRIHELESEISELKKELDQNNNQ 974

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            Q D ++          ++ I +  +          R   L  +  E++K++ Q   +   
Sbjct: 975  QNDEKIEKLQKEIEDLKSVIDEENEQKVSNTEAENRIHELESEISELKKELDQNNNQQND 1034

Query: 612  EKTAILISILHEVHIQIHQIESQ 634
            EK   L   + ++  ++   +++
Sbjct: 1035 EKIEKLQKEIEDLKNELESSKAE 1057



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 84/266 (31%), Gaps = 20/266 (7%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            +       +E+ E +      I  +KD+  R      + + L +   +   E+      
Sbjct: 710 LKTEYLKLIEEKRETDEKYNKEIEELKDRINRGEGGDEVVEELAKENDELSKENEELKEK 769

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---------------LLTLINH 494
            K      + +  + ++ +      +  ++    E  L                      
Sbjct: 770 LKDIKSSEEIEELTNQIEELEKELNEKKEQLEQTENELTQQIEEIEEEKSEELKKKNEEI 829

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             +  E  +   +I+    E+  L   L +   E +         +  ++   + LK+  
Sbjct: 830 ERLQNEIEELNKEIKSLTEEIDDLQEKLENAKKEIQELQEYAEKSQENDKQTIDELKEKL 889

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK-----G 609
           R   +  +  + T+  +       Q+ L L K    L  + E+++  I +   +      
Sbjct: 890 RLANETKVTDSDTKVLVESKEAAEQKVLLLEKEISDLKIEIEDLKSVIDEENEQKVSNTE 949

Query: 610 EAEKTAILISILHEVHIQIHQIESQE 635
              +   L S + E+  ++ Q  +Q+
Sbjct: 950 AENRIHELESEISELKKELDQNNNQQ 975



 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 65/224 (29%), Gaps = 22/224 (9%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y +   +++QQL               K        +  ++   +       L  +  
Sbjct: 656 ENYKKVTNEKIQQLENTKRQLQEQINNQPKPEGNLAMLQKENEEYQRQINELKDLKTEYL 715

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                   T   +   ++E    +      +  +++L         E      EE+ ++L
Sbjct: 716 KLIEEKRETDEKYNKEIEELKDRINRGEGGDEVVEELAKENDELSKEN-----EELKEKL 770

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ------------ALALYKRFR 589
            +    E +++L  Q+ +        +  +        Q                 +   
Sbjct: 771 KDIKSSEEIEELTNQIEELEKELNEKKEQLEQTENELTQQIEEIEEEKSEELKKKNEEIE 830

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            L  + EE+ K+I  +T     E+   L   L     +I +++ 
Sbjct: 831 RLQNEIEELNKEIKSLT-----EEIDDLQEKLENAKKEIQELQE 869


>gi|163784037|ref|ZP_02178994.1| replicative DNA helicase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880694|gb|EDP74241.1| replicative DNA helicase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 486

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 65/185 (35%), Gaps = 27/185 (14%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                    E A+L +++  P+++      L    + N + + L+  +     E     P
Sbjct: 7   SPLPHDDEAERAVLGSILIDPSVVDTVINILKPDDFYNIKNKVLYEGIIELVQEGVVPEP 66

Query: 535 EEIHQR-------------------LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
             +                      + +     +L+++  Q+++  +          ++ 
Sbjct: 67  IVLRHHLEKKGKLKLLGNENYITFVMSDAAPQNVLEKIANQLKEKSI--------ARNLI 118

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           Q  +  L   K  + ++   EE E QI +++ +        L  IL +    I+++  +E
Sbjct: 119 QIAKNILIKSKEVKDVNELIEEAENQIFKLSEEKNISDYYPLGEILKQTLKIINELSKKE 178

Query: 636 AMIEG 640
            ++ G
Sbjct: 179 TIVTG 183


>gi|302535604|ref|ZP_07287946.1| replicative DNA helicase [Streptomyces sp. C]
 gi|302444499|gb|EFL16315.1| replicative DNA helicase [Streptomyces sp. C]
          Length = 493

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 62/223 (27%), Gaps = 20/223 (8%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            +        G    +    +D+               ++  +    E ++L  ++    
Sbjct: 18  DRLPARSRRGGEGRGRGDDQQDRGREGGSWDGGGGGFERVPPQDLDAEQSVLGGMLLSKD 77

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            + +  + L    +     + ++  +   + + +   P  +   L  RG    + ++   
Sbjct: 78  AIADVVEVLKGHDFYRPSHETIYQAILDLYAKGEPADPITVGAELTRRG---EISKVGGA 134

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                L  +   A   +         A+ +R      +      Q+         E    
Sbjct: 135 SYLHTLVQSVPTAANAEYYAEIVHERAVLRRLVAAGTKIT----QMGYAADGDVDEIVNS 190

Query: 617 LISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646
             + ++ V  Q                ++  EA+    G+MSG
Sbjct: 191 AQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGQMSG 233


>gi|213966499|ref|ZP_03394670.1| replicative DNA helicase [Corynebacterium amycolatum SK46]
 gi|213950865|gb|EEB62276.1| replicative DNA helicase [Corynebacterium amycolatum SK46]
          Length = 530

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 11/151 (7%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +        E ++L  ++ +  ++ + Y++L    +     Q ++S +   + E     P
Sbjct: 88  RTPPHNIEAEQSVLGAMLLNSEVVADVYEQLTPEDFYRPAHQTIYSAILHLYGESSEIDP 147

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +  RL   G    L+++   +    L S    A          Q  A     +   R+
Sbjct: 148 ILLAGRLDRTGD---LERIGGPLYLHTLASLVPTAAN-------AQFYARIVAEKATIRR 197

Query: 595 KEEIEKQIAQVTAKGEAE-KTAILISILHEV 624
             E   +IAQ+   G  + +   L+    ++
Sbjct: 198 LVEAGTKIAQIGYAGAEDTEPEQLVDEAQQL 228


>gi|83590641|ref|YP_430650.1| hypothetical protein Moth_1807 [Moorella thermoacetica ATCC 39073]
 gi|83573555|gb|ABC20107.1| hypothetical protein Moth_1807 [Moorella thermoacetica ATCC 39073]
          Length = 690

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 33  NAVKGDYW-ACCPFHDEKTPSFHCNDSKGFYYCF-SCHVKGDHLSFLSALLGCSFIESVQ 90
           N     +   CCP HD+  PSF  N   G++ C   C      L FL A+ G    ++++
Sbjct: 35  NERDDGWMDGCCPLHDDTRPSFSFNRWSGYWLCRAGCGAGW-PLDFLEAVAGLDGDDALE 93

Query: 91  RLAAIAG 97
            +  + G
Sbjct: 94  EIRELCG 100


>gi|253571802|ref|ZP_04849208.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839010|gb|EES67095.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 291

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I+D+   IPI++ + +  +    R+       ++W   P+ +E+TPSF  N  K  +  F
Sbjct: 3   IEDIR-KIPITDFLARMGHEPTARKGN-----EWWYSAPYREERTPSFRVNILKNVWQDF 56

Query: 66  SCHVKGDHLSFLSALLGC-SFIESVQRLAAIAGVPLPVVDPKIEKK 110
                GD  S    ++G   F    + ++   G  +P +  + ++K
Sbjct: 57  GIGRGGDIFSLAGEIIGSGDFKSQAKFISESLGGIVPEIVFRPKEK 102


>gi|325853907|ref|ZP_08171423.1| hypothetical protein HMPREF9303_1984 [Prevotella denticola CRIS
          18C-A]
 gi|325484244|gb|EGC87174.1| hypothetical protein HMPREF9303_1984 [Prevotella denticola CRIS
          18C-A]
          Length = 255

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75
          P+  E+TPSF  + +K  ++ F     GD   
Sbjct: 6  PYRTERTPSFKVDTTKNVWFDFGTGKGGDIFD 37


>gi|301161312|emb|CBW20852.1| putative conjugative transposon protein traP [Bacteroides
          fragilis 638R]
          Length = 292

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75
          P+  E+TPSF  + +K  ++ F     GD   
Sbjct: 35 PYRTERTPSFKVDTAKNIWFDFGTGKGGDIFD 66


>gi|297616291|ref|YP_003701450.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
 gi|297144128|gb|ADI00885.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
          Length = 675

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 54/393 (13%), Positives = 90/393 (22%), Gaps = 66/393 (16%)

Query: 38  DYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97
                   HD++ PS   N   GFY C  C        FL  +               AG
Sbjct: 42  SLKCLN--HDDRKPSATVNVKSGFYVCHVCG-SFSPYRFLVEI---------------AG 83

Query: 98  VPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMF 157
           +                 +L    E    + H                +       I+  
Sbjct: 84  IAPEDASYF---INDYLRELYVKDERTGRYIHAFPHYDPSHTYIPTPGQEEEFEEFIKEA 140

Query: 158 KLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217
           K    P+          +    E         +  D  A   +             RG++
Sbjct: 141 KARLRPELPIVQEYITARGIKYEMLERFEWGYVPHDEDAGQVECL-----VVPFRVRGKI 195

Query: 218 IAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILV 277
            A  GR                             GA+   + S+         S  ++V
Sbjct: 196 RAIRGRAYD-----------------------GRKGAVKNSRFSLWNLDSLEGKSQAVIV 232

Query: 278 EGYMDVL----SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYK 333
           EG  D L    +L   GV   V S+       + +  ++    I L    DD        
Sbjct: 233 EGESDALRTIQALEACGVDIPVVSVPGNNFRKEWKREFEGIRTIYLIPQDDDASANFVRS 292

Query: 334 AIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR 393
           A+ ++         + +     G+D   ++                   D          
Sbjct: 293 ALAVLGEERCKVVELPWKRGDVGKDICEWLTRN-------------DHTDQELVELIPLE 339

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                  R      L        D  +R   ++
Sbjct: 340 EHQDRFSRYYRVEELLKREPAEPDWLVRGMIAR 372


>gi|325297657|ref|YP_004257574.1| DNA primase [Bacteroides salanitronis DSM 18170]
 gi|324317210|gb|ADY35101.1| DNA primase [Bacteroides salanitronis DSM 18170]
          Length = 295

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 26/80 (32%), Gaps = 21/80 (26%)

Query: 1  MNYPRDFIKDLLIHIPISNLIGQ------YVDWDRRKTNAVKGDYWACCPFHDEKTPSFH 54
          MN            I I + + Q      YV             YW   PF  E TPSF 
Sbjct: 1  MNISEA------KQIRIVDFLAQLGHHAQYVK---------SKQYWYLSPFRQEDTPSFK 45

Query: 55 CNDSKGFYYCFSCHVKGDHL 74
           ND    +Y F     GD +
Sbjct: 46 VNDRLNEWYDFGAATGGDLV 65


>gi|320009719|gb|ADW04569.1| replicative DNA helicase [Streptomyces flavogriseus ATCC 33331]
          Length = 491

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 70/226 (30%), Gaps = 26/226 (11%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                  S   R   K    + ++G        S    ++  +    E ++L  ++    
Sbjct: 16  PSDRLPVSRQRRGEGKGREEQHERGRESGWDGGSSGFERVPPQDLDAEQSVLGGMLLSKD 75

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            + +  + +    +     + +++ +   + + +   P  +   L +RG      ++ + 
Sbjct: 76  AIADVVEIIKGHDFYRPAHETVYTAILDLYAKGEPADPITVAAELVKRG------EITKV 129

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEK 613
                L +             Y + +      R + R+  E   +I Q+    +    E 
Sbjct: 130 GGAPYLHTLVQSVPTAANASYYAEIVH----ERAVLRRLVEAGTKITQMGYAADGDVDEI 185

Query: 614 TAILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646
                + ++ V  Q                ++  EA+    G+M+G
Sbjct: 186 VNSAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 231


>gi|257063560|ref|YP_003143232.1| hypothetical protein Shel_08280 [Slackia heliotrinireducens DSM
           20476]
 gi|256791213|gb|ACV21883.1| hypothetical protein Shel_08280 [Slackia heliotrinireducens DSM
           20476]
          Length = 335

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 60/382 (15%), Positives = 112/382 (29%), Gaps = 74/382 (19%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
              + I  L   +P  +++  Y          +  ++  C  + +++ PS          
Sbjct: 2   ISAENIATLKAAMP--DVLHHY------GVANLGRNF--CSLWREDRDPSCRFYADSNLV 51

Query: 63  YCFSCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKKEKIQ------- 114
             +   V  D    +  + G S F + V+ ++ I G  L        K +  +       
Sbjct: 52  TDYGEGVTVDVFGLVGKVEGVSGFADQVRIVSQIVGHDLDECADYAPKAKAERPPFEPPA 111

Query: 115 TDLIRLIE-VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
               ++      +     L     K    YL  RG     I    LGY        R   
Sbjct: 112 KTGFKVNVLETVEKCLCDLYEPEGKPALGYLYGRGFSDADIVRCGLGYVAKPSDLNRCFT 171

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRG--QVIAFGGRTLSKGESV 231
            ++                             +  P    RG  QV     R +   +  
Sbjct: 172 LRERVKV----------------------NGYVCIPYPHDRGFSQVRYCMLRAVPAEQ-- 207

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSI--RKDVRRNSSSFIILVEGYMDVLSLCQA 289
                PE                    +KS   R+ +       + LVEG +D ++L + 
Sbjct: 208 ----PPEHK------------EIRPTGKKSPLFREYLLAEGLPVVYLVEGLLDAIALERV 251

Query: 290 GVQN--VVSSLGTALTEYQLRLLWK-----LSPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342
             +   VV+  GT L +   ++L          ++V+  D D+ G +AA     +     
Sbjct: 252 STRPVSVVALGGTGLKKRIGQVLCYTPAELRPRKVVVAMDEDEAGDKAAKT---IAADLK 308

Query: 343 IPGNRVNFVLLSRG-EDPDSFI 363
             G   + +    G +D    +
Sbjct: 309 KIGVPYSLMSWPDGCKDACDVL 330


>gi|312867591|ref|ZP_07727798.1| DnaB-like helicase C-terminal domain protein [Streptococcus
           parasanguinis F0405]
 gi|311096888|gb|EFQ55125.1| DnaB-like helicase C-terminal domain protein [Streptococcus
           parasanguinis F0405]
          Length = 643

 Score = 54.5 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 22/115 (19%)

Query: 32  TNAVKGDYWA-CCPFHDE----KTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS-F 85
               KG Y    C  H      +T +FH  D    + CFSC   GD    +  + G   F
Sbjct: 21  RKGGKGAYICPLC--HSGEGRNRTGAFHIYDEIQ-WKCFSCDRGGDIFDLIGYVEGIDKF 77

Query: 86  IESVQRLAAIAGVPLPVVDPKIE-------------KKEKIQTDLIRLIEVATDF 127
            + ++R+  +  +     + K +             K+E+ + + +     AT  
Sbjct: 78  KDQLKRVRELFNLSTECDELKNQRTEYLNSNAVFPLKEEEKKDNYLSFYNEATKH 132


>gi|203463445|ref|YP_002223995.1| gp54 [Mycobacterium phage Solon]
 gi|197312632|gb|ACH62986.1| gp54 [Mycobacterium phage Solon]
          Length = 171

 Score = 54.5 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91
            C  H+E  PS   +     + C +C  +G+ ++ L      ++  +V+R
Sbjct: 32 CLCWHHEESRPSAAVSYQLNAFNCLACSARGNAITLLMTYEEVNYQTAVER 82


>gi|192823868|ref|YP_001994786.1| gp55 [Mycobacterium phage DD5]
 gi|192824140|ref|YP_001994695.1| gp54 [Mycobacterium phage Lockley]
 gi|190610370|gb|ACE79891.1| gp54 [Mycobacterium phage Lockley]
 gi|190610646|gb|ACE80164.1| gp55 [Mycobacterium phage DD5]
          Length = 180

 Score = 54.5 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91
            C  H+E  PS   +     + C +C  +G+ ++ L      ++  +V+R
Sbjct: 32 CLCWHHEESRPSAAVSYQLNAFNCLACSARGNAITLLMTYEEVNYQTAVER 82


>gi|12657905|ref|NP_075318.1| gp51 [Mycobacterium phage Bxb1]
 gi|157786448|ref|YP_001491625.1| Putative DNA primase [Mycobacterium phage U2]
 gi|12584046|gb|AAG59756.1| gp51 [Mycobacterium phage Bxb1]
 gi|40769368|gb|AAR89694.1| gp54 [Mycobacterium phage U2]
          Length = 171

 Score = 54.5 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91
            C  H+E  PS   +     + C +C  +G+ ++ L      ++  +V+R
Sbjct: 32 CLCWHHEESRPSAAVSYQLNAFNCLACSARGNAITLLMTYEEVNYQTAVER 82


>gi|51102928|gb|AAT96077.1| putative inner membrane protein [Pseudomonas viridiflava]
          Length = 964

 Score = 54.5 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 5/121 (4%)

Query: 31  KTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIES 88
           K      +Y A  P   +K   S   N +KG +  F+     GD +  +  L G + +E+
Sbjct: 37  KRVDGGKEYTAPNPTRSDKRAGSLKVNLAKGTWADFATGDKGGDLIDLVRYLDGGTDVEA 96

Query: 89  VQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145
            ++LA    V         P  + K      L  + + A        +        +   
Sbjct: 97  CRKLAEFLNVVADNSQSATPASKSKTPEWVALQPIPDEAMKKCPAKHRQHGTPSKVWVYR 156

Query: 146 E 146
           E
Sbjct: 157 E 157


>gi|163785130|ref|ZP_02179831.1| hypothetical protein HG1285_07799 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879602|gb|EDP73405.1| hypothetical protein HG1285_07799 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 441

 Score = 54.5 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 42/125 (33%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF--- 61
           R+ I ++   + I ++    ++  +         +   CP H E+ PSF   ++      
Sbjct: 248 REAIDEIKRRLRIVDIF--KLEGTKSGN-----RWDCICPIHPERNPSFKVFENLETGDI 300

Query: 62  ---YYCFSCHVK------G-------------------DHLSFLSALLGCSFIESVQRLA 93
              Y+             G                   D +     L   SF E+V  L 
Sbjct: 301 AVDYH----GRSHVSKITGELTEIPDWVRETKDGLPYFDIIDLYRILKNKSFKEAVYELG 356

Query: 94  AIAGV 98
            IAGV
Sbjct: 357 QIAGV 361


>gi|332982989|ref|YP_004464430.1| DNA primase [Mahella australiensis 50-1 BON]
 gi|332700667|gb|AEE97608.1| DNA primase [Mahella australiensis 50-1 BON]
          Length = 365

 Score = 54.5 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 98/363 (26%), Gaps = 46/363 (12%)

Query: 10  DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPS------FHCNDSKGFYY 63
           D+   I I ++    +    +     + +Y A CP   +           +  + K  YY
Sbjct: 3   DIKE-IHILDV-ADRLGLTPQPK--TRTEYVARCPICGDSNDKRHKHLYLNIVEDK--YY 56

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA-----GVPLPVVDPKIEKKEKIQTDLI 118
           C  C + G  +   +   G    E+ + L   A      V   VV+       K + +  
Sbjct: 57  CTRCGIGGYAIGLYAKATGIDTKEAYRELINDAPVSHTAVKPSVVNVPDTADIKTRDETY 116

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
             +    + + +             L  RG+    I        P    + +   R    
Sbjct: 117 TALLKKLELYIN---------HTADLRRRGLTVKEIISRGYRSVPQEAAARQSICRALIQ 167

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK--GESVKYLNS 236
           +   +         DN    +      L  P+R   G++     R  S   G   ++ + 
Sbjct: 168 TGHMLKGVPGFYTDDNGNWDFYGSAGYL-IPVRDVEGRIQGMQVRLDSPGIGGKYRWFSM 226

Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
           P+                 N +               + + EG +             + 
Sbjct: 227 PDKD---------------NSVSAKSWVHTSYGIDDEVWITEGPLKADVASFLTGHTFIG 271

Query: 297 SLGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVLLS 354
             G   T+     L ++     V+ FD D        +AI  L       G +       
Sbjct: 272 VAGVNATKGLAEQLKQMGIKEAVVAFDMDFVRNEHVEEAIKHLHASLKKAGIKTATACWH 331

Query: 355 RGE 357
            G 
Sbjct: 332 PGM 334


>gi|320333454|ref|YP_004170165.1| Bifunctional DNA primase/polymerase [Deinococcus maricopensis DSM
           21211]
 gi|319754743|gb|ADV66500.1| Bifunctional DNA primase/polymerase [Deinococcus maricopensis DSM
           21211]
          Length = 630

 Score = 54.5 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 63/376 (16%), Positives = 113/376 (30%), Gaps = 42/376 (11%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACC--PFHDEKTPSFHCNDSKGFYYCFS--C 67
             H+ +  ++ +Y   D              C  P H +   S H         CF   C
Sbjct: 253 RQHVNLCEIMARYRAVDSSGQ--------CKCTHPDHPDAQGSMHVWRDHAT--CFGTKC 302

Query: 68  HVK-G-----DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRL 120
               G     D +S      G +F+E+V   A + G  LP  +    +  E ++ + +  
Sbjct: 303 RRNDGRRHTEDAISVTMRFEGLTFLEAV---AHLNGGNLPTEEQLPTEWDEPVREEALD- 358

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
              A    +          L        +D  + +  ++     SR    E +       
Sbjct: 359 ---AARVRNAQ---TDWTALVDAAHRALLDQGSDQALQVMDYLYSRGFTDETILAAKLGV 412

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
                   L+  ++       +R RL+ P     G  +   GRT+         +S +  
Sbjct: 413 VDTSVPDSLLPLNSKGAPSRTWRGRLVIPNLRPDGTAMDVAGRTMQPKP----TDSRKAR 468

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
            + K                     + + S   +++VEG +D LS+ QA   + V  +  
Sbjct: 469 WYRKYAI-----PTRPGGYGVPPYGLAQLSRRPVLVVEGQLDALSVRQALPTSNVLGIAG 523

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL--SRGED 358
                   +      R  L  D D         A   +      G  V  V    S  +D
Sbjct: 524 IGNLNPEHVSGLAGHRAYLLLDPDTDHDAGGAAARSAIDALHAAGAEVYLVPKLVSTTDD 583

Query: 359 PDSFIRCYGKTAFEKL 374
            +  +   G+  F +L
Sbjct: 584 LNDCLVGMGQDDFAEL 599


>gi|75812792|ref|YP_320409.1| ATPase [Anabaena variabilis ATCC 29413]
 gi|75705548|gb|ABA25220.1| ATPase [Anabaena variabilis ATCC 29413]
          Length = 873

 Score = 54.5 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 77/214 (35%), Gaps = 2/214 (0%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R +++    +     +  +++    + +L     + ++AL+       
Sbjct: 322 YRKYIEKDAALERRFQQVYVDQPSVEDTISILRGLKERYELHHGVKISDSALVAAATLSA 381

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      + +   +      +      R
Sbjct: 382 RYISDRFLPDKAIDLVDEAAAKLKMEITSKPEELDEIDRKILQLEMERLSLQKETDSASR 441

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +  +             D      QA   +  R R + ++ E +  +I Q     +  + 
Sbjct: 442 ERLERLERELAELKERQDALNAQWQAEKQIIDRIRQIRQEIERVNVEIQQAERDYDLNRA 501

Query: 615 AIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
           A L  S L E+  Q+ + E++ A I+  GK   R
Sbjct: 502 AELKYSKLTELQRQLEEAEARLAQIQTSGKSLLR 535


>gi|317133723|ref|YP_004089634.1| hypothetical protein Rumal_3285 [Ruminococcus albus 7]
 gi|315450185|gb|ADU23748.1| hypothetical protein Rumal_3285 [Ruminococcus albus 7]
          Length = 264

 Score = 54.5 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 11/107 (10%)

Query: 8   IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFH-----DEKTPSFHCNDSKGF 61
           ++D+     + +L  +  +D  R  ++         CP H     D    + +   +   
Sbjct: 7   LEDIKDACNLVDLARELDIDMQRSGSHWAIR-----CPNHRGGQYDRHIGNCYITKNHKN 61

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE 108
           + C SC  KGD L+ +    GCSF+E+V+ L+    +    ++   E
Sbjct: 62  FICKSCGNKGDALTLVQQATGCSFLEAVKFLSNFVEIEPSYIEEGKE 108


>gi|255020462|ref|ZP_05292527.1| Replicative DNA helicase [Acidithiobacillus caldus ATCC 51756]
 gi|254970072|gb|EET27569.1| Replicative DNA helicase [Acidithiobacillus caldus ATCC 51756]
          Length = 457

 Score = 54.5 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 55/163 (33%), Gaps = 10/163 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K        E +++  L+  P         L+   +     Q L+  +    +EQK    
Sbjct: 14  KALPYSLEAEQSVIGGLLIDPESWDRIADLLSPEDFYQKRHQVLYRCIGQMLLEQKPLDA 73

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L +    ELL +         L +AT  A  V       +  A+ +      R+
Sbjct: 74  ITLAEYLQDH---ELLAEAGGVAYVVELANATPSAANVPAYASIVRDRAILRALIHAGRE 130

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
             ++         +G   +T  L+        ++ Q + ++A+
Sbjct: 131 IADL-----AYRPEGRDAQT--LLEEAERRIFELAQGQKRDAV 166


>gi|332654697|ref|ZP_08420440.1| toprim domain protein [Ruminococcaceae bacterium D16]
 gi|332516661|gb|EGJ46267.1| toprim domain protein [Ruminococcaceae bacterium D16]
          Length = 633

 Score = 54.5 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 44/144 (30%), Gaps = 30/144 (20%)

Query: 1   MNYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M Y ++ I        + + + G+     R                HD    S     +K
Sbjct: 1   MYYTQEQIDRA-NQADLVSFLQGRGEQLTRAGQEYRWKR-------HD----SLTVRGNK 48

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL---------------AAIAGVPLPVVD 104
             +Y  S    G  + F+    G SF E+V+ L               A+ +   LP   
Sbjct: 49  --WYRHSQSKGGAPIDFVMEFYGKSFTEAVELLTGEKGAAPPPDRPTPASFSDFRLPPRS 106

Query: 105 PKIEKKEKIQTDLIRLIEVATDFF 128
           P         T   R+ E  T FF
Sbjct: 107 PDNRTARNYLTAARRIDEDVTGFF 130


>gi|188997594|ref|YP_001931845.1| replicative DNA helicase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932661|gb|ACD67291.1| replicative DNA helicase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 470

 Score = 54.5 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 11/144 (7%)

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E A+L +LI +P I      +L    +   + + ++  +   F + K      +   
Sbjct: 14  EDAERAILGSLIVYPEITDSVLTKLKIDDFYLQKHKIIYETIIDLFNQGKPLEIIILKDG 73

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L ++G  E +  +   +      S   +           Q + + K   +L    E  +K
Sbjct: 74  LEKKGKLEFVGGI-SYLYQLSEESVPPDIAF--------QIVDIIKEKSVLRSLIESAQK 124

Query: 601 QIAQVTAKGEAEKTAILISILHEV 624
            IA+   K        L+     +
Sbjct: 125 IIAKAKNKESD--INSLLEEAESI 146


>gi|298245918|ref|ZP_06969724.1| zinc finger CHC2-family protein [Ktedonobacter racemifer DSM 44963]
 gi|297553399|gb|EFH87264.1| zinc finger CHC2-family protein [Ktedonobacter racemifer DSM 44963]
          Length = 416

 Score = 54.5 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 29/91 (31%), Gaps = 18/91 (19%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF---HD---EKTPSFHCN---- 56
            I++         +IG+YV  DR            CCPF   H    +  PS   +    
Sbjct: 323 TIQEWCAQQDALGVIGRYVVLDRSG--------LGCCPFGWHHSDGKDTHPSLWVHEPSR 374

Query: 57  DSKGFYYCFSCHVKGDHLSFLSALLGCSFIE 87
                +YC +    G    FL    G    E
Sbjct: 375 PGGACWYCHTWKQGGSVFDFLRLYYGLEARE 405


>gi|330752044|emb|CBL80555.1| Replicative DNA helicase [uncultured Flavobacteria bacterium]
          Length = 510

 Score = 54.5 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 61/207 (29%), Gaps = 15/207 (7%)

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
              +      +Q    +    G++  +    E A+L  L+     L +    L    +  
Sbjct: 4   PQYNNASAPKNQGRSANLTAGGRVPPQAIDLEEAVLGALLIDKNALSKIIDILHPDAFYK 63

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCE------RGFGELLKQLDRQVRDAGLWSAT 566
           ++ + ++  +   F + +      +   L +       G    L QL ++V         
Sbjct: 64  DQHKHIFKIITHLFGDNQPVDILTVAAELRKDGSMKKAGGESFLAQLSQKVSSGAHIEYH 123

Query: 567 TEANIVDVR---------QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
               +             +  + A         L  Q E+   ++AQ   K   E    L
Sbjct: 124 ARIVLQKHIQRELVRISSEIIESAFDETTDVLELLDQAEQKLFEVAQGNLKRNYESAEEL 183

Query: 618 ISILHEVHIQIHQIESQEAMIEGFGKM 644
           I    +    I + E    +  GF  +
Sbjct: 184 IRKAIDKIETISKQEGLSGVPSGFAAL 210


>gi|147678499|ref|YP_001212714.1| DNA primase [Pelotomaculum thermopropionicum SI]
 gi|146274596|dbj|BAF60345.1| DNA primase [Pelotomaculum thermopropionicum SI]
          Length = 315

 Score = 54.5 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 45/339 (13%), Positives = 81/339 (23%), Gaps = 69/339 (20%)

Query: 35  VKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH----VKGDHLSFLSALLGCSFIESVQ 90
                 AC PF  E+ PSF      G +           KG+ +  L+ L   ++ E+  
Sbjct: 28  TGDKLHACSPFRHERHPSFAVRLDNGVWIDSGSDDEGWRKGNIIKLLAFLRNETYQETAD 87

Query: 91  RLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGID 150
            L    G       P     + ++                 L                  
Sbjct: 88  YLLEEYG-------PFAGDPDHLRLTY-------------DLTPRTAPVSLDPAVLDEFK 127

Query: 151 SHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPI 210
                + +     +                                  YDR    + FP 
Sbjct: 128 YRHPYLTERRGIEEKWQRAFRVG-------------------------YDRKHRAVTFPW 162

Query: 211 RSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS 270
              +G+++    R  S  +   +       +      L   + A   L            
Sbjct: 163 YDRQGRLVNVKFR--SVTDKRFWFYGDGQPVGDHVYALNFIYKAGKRL------------ 208

Query: 271 SSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRA 330
                +VE  +D ++L QAG   V           +  ++      +V+  D D  G R 
Sbjct: 209 ---AYVVESEIDAITLWQAGFPAVALGGANLSPRQRELIIQSPLECLVVATDNDKAGRRI 265

Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
           A      +              +   +D +   R     
Sbjct: 266 ARTIAGQLGGFKAVQAIDLPGHV---KDVNDLTREELLE 301


>gi|237757028|ref|ZP_04585480.1| replicative DNA helicase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237690808|gb|EEP59964.1| replicative DNA helicase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 461

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 11/144 (7%)

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E A+L +LI +P I+     +L    +   + + ++  +   F + K      +   
Sbjct: 5   EDAERAILGSLIVYPEIIDSVLTKLKIDDFYLQKHKIIYETIIDLFNQGKPLGLIILKDG 64

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L ++G  E +  +   +      S   +           Q + + K   +L    E  +K
Sbjct: 65  LEKKGKLEFVGGI-SYLYQLAEESVPPDIAF--------QIVDIIKEKSILRSLIESAQK 115

Query: 601 QIAQVTAKGEAEKTAILISILHEV 624
            IA+   K        L+     +
Sbjct: 116 IIAKAKNKESD--INSLLEEAESI 137


>gi|256819036|ref|YP_003140315.1| replicative DNA helicase [Capnocytophaga ochracea DSM 7271]
 gi|256580619|gb|ACU91754.1| replicative DNA helicase [Capnocytophaga ochracea DSM 7271]
          Length = 525

 Score = 54.1 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 67/202 (33%), Gaps = 30/202 (14%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
              Q SL +GKL  +    E A+L  ++     + +    L    +   + Q ++  +F 
Sbjct: 20  SRTQVSLERGKLPPQDLNLEEAILGAMLIDKKGVDDVIDILNPEVFYKKQHQLIYQAIFE 79

Query: 525 DFVEQKYFLPEEIHQRLCERG----------FGELLKQL---------DRQVRDAGLWSA 565
            F E +      + ++L + G             L +++          R +    +   
Sbjct: 80  LFNESEAIDLLTVAEQLRKNGNLEAVGGEFYLINLTQRVSSSANVEFHARIILQKFIKRK 139

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
             E +   +   Y     ++       ++  E+ +   + +++   +     +  + ++ 
Sbjct: 140 LIEISSEIIEDAYDDTRDVFDSLDSAEQKLYEVTQGNLKRSSEAAGDLVIKALKKIQDLS 199

Query: 626 IQIHQIESQEAMIEGF-GKMSG 646
            +           +GF G  SG
Sbjct: 200 NK----------TDGFSGVPSG 211


>gi|297617318|ref|YP_003702477.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
 gi|297145155|gb|ADI01912.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
          Length = 675

 Score = 54.1 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 54/393 (13%), Positives = 90/393 (22%), Gaps = 66/393 (16%)

Query: 38  DYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97
                   HD++ PS   N   GFY C  C        FL  +               AG
Sbjct: 42  SLKCLN--HDDRKPSATVNVKSGFYVCHVCG-SFSPYRFLVEI---------------AG 83

Query: 98  VPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMF 157
           +                 +L    E    + H                +       I+  
Sbjct: 84  IAPEDASYF---INDYLRELYVKDERTGRYIHAFPHYDPSHTYIPTPGQEEEFEEFIKEA 140

Query: 158 KLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217
           K    P+          +    E         +  D  A   +             RG++
Sbjct: 141 KARLRPELPIVQEYITARGIKYEMLERFEWGYVPHDEDAGQVECL-----VVPFRVRGKI 195

Query: 218 IAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILV 277
            A  GR                             GA+   + S+         S  ++V
Sbjct: 196 RAIRGRAYD-----------------------GRKGAVKNSRFSLWNLDSLEGKSQAVIV 232

Query: 278 EGYMDVL----SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYK 333
           EG  D L    +L   GV   V S+       + +  ++    I L    DD        
Sbjct: 233 EGESDALRTIQALEACGVDIPVVSVPGNNFRKEWKREFEGIRTIYLIPQDDDASANFVRS 292

Query: 334 AIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR 393
           A+ ++         + +     G+D   ++                   D          
Sbjct: 293 ALAVLGEERCKVVELPWKRGDVGKDICEWLTRNN-------------HTDQELVELIPLE 339

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                  R      L        D  +R   ++
Sbjct: 340 EHQDRFSRYYRVEELLKREPAEPDWLVRGMIAR 372


>gi|313665037|ref|YP_004046908.1| replicative DNA helicase [Mycoplasma leachii PG50]
 gi|312949610|gb|ADR24206.1| replicative DNA helicase [Mycoplasma leachii PG50]
          Length = 442

 Score = 54.1 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 14/167 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L   ++    L +    L    +     + ++  +     + K   P  +  RL 
Sbjct: 13  AERFVLGVAMSFSNALADIISVLKVDDFSIEANKYIYQAIIDLNNKNKSVSPISVINRL- 71

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                E + +LD+   D  ++    E       + Y   +      R L    +E+E  +
Sbjct: 72  -----EAINKLDKVGGDIVVYEIAAENYTDQGLEEYIDVIHKSGVVRKLDAVIKELE--L 124

Query: 603 AQVTAKGEAEKTAILIS-ILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            +     + ++   +    L ++ + I + E     IE  G ++ R+
Sbjct: 125 KRNNGNTDVDELLKVAQTKLLDIDLSIKRFE-----IEAVGDVAKRV 166


>gi|282863350|ref|ZP_06272409.1| replicative DNA helicase [Streptomyces sp. ACTE]
 gi|282561685|gb|EFB67228.1| replicative DNA helicase [Streptomyces sp. ACTE]
          Length = 491

 Score = 54.1 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 69/226 (30%), Gaps = 26/226 (11%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                  S   R   K    + ++G             ++  +    E ++L  ++    
Sbjct: 16  PSDRLPVSRQRRGEGKGRDEQHERGRDSGWDNGQSGFERVPPQDLDAEQSVLGGMLLSKD 75

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            + +  + +    +     + +++ +   + + +   P  +   L +RG      ++ + 
Sbjct: 76  AIADVVEIIKGHDFYRPAHETVYTAILDLYAKGEPADPITVAAELVKRG------EITKV 129

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEK 613
                L +             Y + +      R + R+  E   +I Q+    +    E 
Sbjct: 130 GGAPYLHTLVQSVPTAANASYYAEIVH----ERAVLRRLVEAGTKITQMGYAADGDVDEI 185

Query: 614 TAILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646
                + ++ V  Q                ++  EA+    G+M+G
Sbjct: 186 VNSAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 231


>gi|291278467|ref|YP_003495302.1| replicative DNA helicase DnaB [Deferribacter desulfuricans SSM1]
 gi|290753169|dbj|BAI79546.1| replicative DNA helicase DnaB [Deferribacter desulfuricans SSM1]
          Length = 443

 Score = 54.1 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 20/187 (10%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +        E  +L +++     L +    L    + +   + ++S L     E K    
Sbjct: 7   RTPPHNLEAEQGVLASILIDEKALDKVIHLLNADDFYHPAHKLIFSTLIKLAQENKPLDI 66

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE----ANIVDVRQGYQQALAL------ 584
             +  +L +    E    +D       +          A IV  +   +  + +      
Sbjct: 67  VTLISKLTDENKIEEAGGIDYISSLTDIIPNAANVGYYATIVKDKALLRNLIEISGKISS 126

Query: 585 --YKRFRLLSRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             Y+    ++   +E EK+I   A+   KG+    + LIS   E+   +   E +E +I 
Sbjct: 127 KAYEFSGDITELLDETEKEIFKLAEYKLKGDIRPLSELISESFELLQNL--YEKKEDII- 183

Query: 640 GFGKMSG 646
             G  SG
Sbjct: 184 --GIPSG 188


>gi|296131505|ref|YP_003638755.1| replicative DNA helicase [Cellulomonas flavigena DSM 20109]
 gi|296023320|gb|ADG76556.1| replicative DNA helicase [Cellulomonas flavigena DSM 20109]
          Length = 1118

 Score = 54.1 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 53/173 (30%), Gaps = 14/173 (8%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P      S     +   +    E ++L  ++     + +  +++    +     + ++ 
Sbjct: 10  APPDSGHSSGGGFDRTPPQDLDAERSVLGGMMISKDAIADVIEQIKGTDFYRPAHEAIYD 69

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +   +   +      +   L +RG      ++ R    A L +             Y +
Sbjct: 70  AILDLYGRGEPADAITVADELTKRG------EMGRVGGAAYLHTLIASVPTAANAGFYAR 123

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGE----AEKTAILISILHEVHIQIH 629
            +    R R + R+  E   +I Q+    +     E      + ++ V  +  
Sbjct: 124 IV----RERSILRKLVEAGTRIVQLGYATDGGDVDELVNNAQAEVYAVTERRA 172


>gi|1145806|gb|AAA84992.1| DNA-primase [Anabaena variabilis]
          Length = 106

 Score = 54.1 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 2/106 (1%)

Query: 124 ATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFSEE 181
           A  F+ H+L+ ++ +R   YL  +R  +   I+ F LGYAP    +L  + +  K +   
Sbjct: 1   AASFYQHALRQSQGQRAMQYLLSDRQFNEVTIQQFGLGYAPAGWETLHRYLVEDKHYPVH 60

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
            + +AGL+      A  YD FR+RL+ PIR  +G+VI FGGRTL+ 
Sbjct: 61  LVEKAGLIKPRKEGAGYYDVFRDRLMIPIRDIQGRVIGFGGRTLTD 106


>gi|163783025|ref|ZP_02178020.1| replicative DNA helicase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881705|gb|EDP75214.1| replicative DNA helicase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 466

 Score = 54.1 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 11/176 (6%)

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLP 534
                   E ++L T++  P  +    + L +  +   E + L++ +   + E    +  
Sbjct: 7   KPPHDEAAERSVLGTMLADPDNIPVVLEYLNEEDFYIEEHRLLFNIILKLWQEHGNNWDE 66

Query: 535 EEIHQRLCERGFGELLK---QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
             +   + + G  + L     L      A L +  T   IV  + G +  L L       
Sbjct: 67  VVLRDYIRKEGLEDRLPFDWILGIYEEAAPLSTLETACRIVKEKSGLRAVLDLSMNLIKD 126

Query: 592 SRQKEE-------IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            ++ ++        + +I +++ K        +  +  EV   I Q    E ++ G
Sbjct: 127 VKELQDFNTIIEVAQSKIFEISEKTTVTHYYHIKDVAREVIDMIDQFRKTERLVTG 182


>gi|186683260|ref|YP_001866456.1| ATPase [Nostoc punctiforme PCC 73102]
 gi|186465712|gb|ACC81513.1| ATPase AAA-2 domain protein [Nostoc punctiforme PCC 73102]
          Length = 880

 Score = 54.1 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 77/214 (35%), Gaps = 2/214 (0%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R +++    +     +  +++    + +L     + ++AL+       
Sbjct: 329 YRKYIEKDAALERRFQQVYVDQPSVEDTISILRGLKERYELHHGVKISDSALVAAATLSA 388

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      + +   +      +      R
Sbjct: 389 RYISDRFLPDKAIDLVDEAAAKLKMEITSKPEELDEIDRKILQLEMERLSLQKETDSASR 448

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +  +             D      QA   +  R R + ++ E +  +I Q     +  + 
Sbjct: 449 ERLERLERELAELKERQDALNAQWQAEKQIIDRIRQIRQEIERVNVEIQQAERDYDLNRA 508

Query: 615 AIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
           A L  S L E+  Q+ + E++ A I+  GK   R
Sbjct: 509 AELKYSKLTELQRQLKEAEARLAQIQTSGKSLLR 542


>gi|237742741|ref|ZP_04573222.1| primase-helicase [Fusobacterium sp. 4_1_13]
 gi|229430389|gb|EEO40601.1| primase-helicase [Fusobacterium sp. 4_1_13]
          Length = 358

 Score = 54.1 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 99/356 (27%), Gaps = 46/356 (12%)

Query: 23  QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL-SALL 81
           +Y++      N  K         H++K PS +         CF+C  K D    +     
Sbjct: 15  EYLELK--GIN-TKKFMRCFSLEHEDKNPSMNYFAPGKICKCFACGEKYDIFKLVGQEYN 71

Query: 82  GCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLH 141
             +F + ++++  +                  +  +    E    +         +    
Sbjct: 72  LTNFHDQIEKVYELY---------------TNKELIKNANETI--YSKKGTNIDLETSNR 114

Query: 142 YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDR 201
              +        + +  L          + +L Q  +   + I   L            +
Sbjct: 115 TLKENTTNSLENMSVEFLKKYRLYIEKCQNNLSQTDYLTNRGISKELQKKRGIGYDPEFK 174

Query: 202 FRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKS 261
                   I +  G   +F  R   K  + +     +  +++                  
Sbjct: 175 NGEWKALIIPTWYG---SFTARNTDKNSNDRLRKVGKMEIYN------------------ 213

Query: 262 IRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCF 321
               ++ N      +VEG +D LSL + G   +      ++     R             
Sbjct: 214 -YWQLQENPKKNFYIVEGEIDALSLEEVGKNAIALGSIASINLLIKRFQNDKPTNTFYLM 272

Query: 322 -DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376
            D D  G++A  +  + +    +        LL + +DP+ ++     +  + L  
Sbjct: 273 LDNDKQGIKAQEELYNKMKGLGL--KVEKTNLLGKYKDPNDYLVEDRNSFTKTLNH 326


>gi|259909531|ref|YP_002649887.1| DnaG primase-like protein [Erwinia pyrifoliae Ep1/96]
 gi|224965153|emb|CAX56685.1| DnaG primase-like protein [Erwinia pyrifoliae Ep1/96]
          Length = 947

 Score = 54.1 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 94/316 (29%), Gaps = 22/316 (6%)

Query: 78  SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF-------FHH 130
                 S   +V RL   AG   P            +  L  L +            +H 
Sbjct: 1   MKTENFSLPRAVLRLREFAGHN-PSSSAAAVPASPPRQTLTDLDDDGQALLGQVVNGYHR 59

Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190
           +L N+ +                               L   +  K     +     L +
Sbjct: 60  NLLNSPEALAWLEKRGLNHPELVSHFKLGFAGAHGVAGLLPSVSSKEGKRLRDRLTLLGV 119

Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250
               +   + R    +     S  G   A  GR L         +S         ++LY 
Sbjct: 120 LRGTTRQDHFRGCLVVPVVGWSESGN-AAQRGRVLQLYGRRTLTDSQIKKG--SARHLY- 175

Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQLR 308
               L      +  +    +SS +IL E  +D ++   AG +NV+++ G      ++   
Sbjct: 176 ----LPAPLVGVWNEQALKASSEVILCEALIDAMTFWCAGYRNVIAAFGANSFTADHLAA 231

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF-IRCYG 367
           L W    R+++ FD D+ G R A             G     V    G D +++ ++   
Sbjct: 232 LRWHGVKRVLIAFDRDEAGDRGAEAVA---GELQQAGIDAWRVRFPLGLDANAYALKSGN 288

Query: 368 KTAFEKLIVESLPLVD 383
             +   L +ES   + 
Sbjct: 289 PESAFALALESASRMH 304


>gi|307591335|ref|YP_003900134.1| DnaB domain-containing protein helicase domain-containing protein
           [Cyanothece sp. PCC 7822]
 gi|306986189|gb|ADN18068.1| DnaB domain protein helicase domain protein [Cyanothece sp. PCC
           7822]
          Length = 735

 Score = 54.1 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 43/146 (29%), Gaps = 12/146 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  ++  P  +      L+   +       ++      + E        +  RL 
Sbjct: 20  AEELILGGILFDPRAIARVADILSPEHFYVRAHATIYQTALEMYREGLPIDLMTVKHRLE 79

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           E+G  E +  + R         +    ++               R     R+ + +  +I
Sbjct: 80  EKGLLEQVGGICRLATLIERTVSAANIDV---------YAKNIVRKHWEKREIQALSHKI 130

Query: 603 AQVTAKGE---AEKTAILISILHEVH 625
            +         A+   ++++    ++
Sbjct: 131 NEWVEDPNYSPADIQELIVNQAQAIN 156


>gi|304373033|ref|YP_003856242.1| Replicative helicase DnaB [Mycoplasma hyorhinis HUB-1]
 gi|304309224|gb|ADM21704.1| Replicative helicase DnaB [Mycoplasma hyorhinis HUB-1]
 gi|330723353|gb|AEC45723.1| Replicative helicase DnaB [Mycoplasma hyorhinis MCLD]
          Length = 457

 Score = 54.1 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 54/145 (37%), Gaps = 3/145 (2%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  ++ +P         L+   + + +L+ +++ L       K F    +   L 
Sbjct: 12  LEEKIISYILYYPNEWINIVNYLSIEDFTSAKLRIIFNALSDLMESTKTFDINLLINELS 71

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                +     ++ +    L     EA I++  +   +A  L K   +  + K+EI +  
Sbjct: 72  RTNKLQQAGG-EQYILSLSLDEYVVEAEIIEYIKKISEATKLRKILEIFEQSKKEISQ-- 128

Query: 603 AQVTAKGEAEKTAILISILHEVHIQ 627
            +  +    ++    ++ +  ++ +
Sbjct: 129 GKKLSDDIIDEFQEKMNQIISINAK 153


>gi|188993921|ref|YP_001928173.1| probable conserved protein found in conjugate transposon TraP
          [Porphyromonas gingivalis ATCC 33277]
 gi|188995148|ref|YP_001929400.1| putative DNA primase involved in conjugation TraP [Porphyromonas
          gingivalis ATCC 33277]
 gi|188593601|dbj|BAG32576.1| probable conserved protein found in conjugate transposon TraP
          [Porphyromonas gingivalis ATCC 33277]
 gi|188594828|dbj|BAG33803.1| putative DNA primase involved in conjugation TraP [Porphyromonas
          gingivalis ATCC 33277]
          Length = 284

 Score = 54.1 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75
          P+  E+TPSF  + +K  ++ F     GD   
Sbjct: 35 PYRTERTPSFKVDTAKNVWFDFGTGKGGDIFD 66


>gi|296118478|ref|ZP_06837056.1| replicative DNA helicase [Corynebacterium ammoniagenes DSM 20306]
 gi|295968377|gb|EFG81624.1| replicative DNA helicase [Corynebacterium ammoniagenes DSM 20306]
          Length = 500

 Score = 53.7 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 74/203 (36%), Gaps = 14/203 (6%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL---REAALLLTLIN 493
            +      G G+ + ++     ++   +R    +  +    ++P      E  +L  ++ 
Sbjct: 22  PEPPESFDGPGQSFPRDNYGGGRRKYGKRDELENPQRYGEFRQPPSDKDAEQGVLGAMLL 81

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            P+ + E   E+    +     Q ++S +   + +     P  +  RL  +   + L+++
Sbjct: 82  SPSSVIEVIDEVDPEDFYYPAHQLIYSAMLDLYSDGTDIDPVIVSSRLDRQ---QNLERI 138

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE- 612
              V    L +    A          +  A     + L R+  +   ++ Q+   G+ + 
Sbjct: 139 GGAVYLHTLLATVPTAAN-------ARYYAEIVAEKALLRKLVDAGTRVVQLGFNGDEDA 191

Query: 613 KTAILISILHEVHIQIHQIESQE 635
           +   ++ +  +   ++ Q ++ E
Sbjct: 192 EIDAVLDLAQQEVFKVAQKKTTE 214


>gi|294778043|ref|ZP_06743477.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|294448101|gb|EFG16667.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 318

 Score = 53.7 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I++    I I++ +    Y    ++  N      W   PF +E   SF  N  +  +Y 
Sbjct: 2  TIEEAKS-IRIADYLHSLGYSPVKQQGINL-----WYKSPFREESEASFKVNTEREQWYD 55

Query: 65 FSCHVKGDHLSF---LSALLGCSFIESVQRLAAI 95
          F     G+ ++    L A     +I  ++R+A  
Sbjct: 56 FGLGKGGNIIALAAHLYATDHVPYI--LKRIAEQ 87


>gi|229489904|ref|ZP_04383759.1| replicative DNA helicase [Rhodococcus erythropolis SK121]
 gi|229323200|gb|EEN88966.1| replicative DNA helicase [Rhodococcus erythropolis SK121]
          Length = 745

 Score = 53.7 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 56/183 (30%), Gaps = 15/183 (8%)

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
           +  +       P     +     G+   +    E ++L  ++     + +  + L    +
Sbjct: 7   RGPSDFSGPDYPGPPEAEPDQEFGRQPPQDMTAEQSVLGGMLLSKDAIADVLEVLRPGDF 66

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
                Q ++  +   +   +   P  +   L  RG      +L R    A L + T    
Sbjct: 67  YRPAHQSVYDVILDLYSRGEPADPVTVSAELDRRG------ELRRIGGAAYLVTLTQTVP 120

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVH 625
                  Y + +A     + + R+  +   +I Q        +  AE      + + EV 
Sbjct: 121 TAANAAFYAEIVA----EKSVLRRLVDAGTRIVQYGYAGTEGQDVAEVVDRAQAEIFEVT 176

Query: 626 IQI 628
            + 
Sbjct: 177 ERR 179


>gi|226309314|ref|YP_002769274.1| replicative DNA helicase [Rhodococcus erythropolis PR4]
 gi|226188431|dbj|BAH36535.1| replicative DNA helicase [Rhodococcus erythropolis PR4]
          Length = 468

 Score = 53.7 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 56/183 (30%), Gaps = 15/183 (8%)

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
           +  +       P     +     G+   +    E ++L  ++     + +  + L    +
Sbjct: 7   RGPSDFSGPDYPGPPEAEPDQEFGRQPPQDMTAEQSVLGGMLLSKDAIADVLEVLRPGDF 66

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
                Q ++  +   +   +   P  +   L  RG      +L R    A L + T    
Sbjct: 67  YRPAHQSVYDVILDLYSRGEPADPVTVSAELDRRG------ELRRIGGAAYLVTLTQTVP 120

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVH 625
                  Y + +A     + + R+  +   +I Q        +  AE      + + EV 
Sbjct: 121 TAANAAFYAEIVA----EKSVLRRLVDAGTRIVQYGYAGTEGQDVAEVVDRAQAEIFEVT 176

Query: 626 IQI 628
            + 
Sbjct: 177 ERR 179


>gi|168700158|ref|ZP_02732435.1| replicative DNA helicase [Gemmata obscuriglobus UQM 2246]
          Length = 460

 Score = 53.7 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 7/160 (4%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
            S  +  +L  +    E  +L  ++  P  L    Q +    +  +  QK++  +     
Sbjct: 2   SSDPLTDRLPPQNRDAERGVLGGILRDPDTLSTVQQHIIADNFYFDAHQKIYQAMSDLAT 61

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E +      ++ +L +    + ++ +  +     LW A       +      +  A+   
Sbjct: 62  ENQPIDLVILYDKLRKN---KQIEDIGGKEYLVDLWEAVPTGANAEYHAKLVKDTAM--- 115

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            R L     EI +     T  G+ E  +     + EV  Q
Sbjct: 116 VRGLIHASNEILRDAYDRTQSGD-ELVSQAERKIMEVAKQ 154


>gi|325299575|ref|YP_004259492.1| DNA primase [Bacteroides salanitronis DSM 18170]
 gi|324319128|gb|ADY37019.1| DNA primase [Bacteroides salanitronis DSM 18170]
          Length = 309

 Score = 53.7 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 13/94 (13%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I++    IPI++ +    Y    ++  N      W   P  +E   SF  N  +  +Y F
Sbjct: 3  IEEAK-KIPITDYLHSLGYSPVKQQGANL-----WYKSPLREEHEASFKVNTEREQWYDF 56

Query: 66 SCHVKGDHLSFLSAL---LGCSFIESVQRLAAIA 96
               G+ ++    L       ++  + R+A  A
Sbjct: 57 GAGKGGNIIALAQELYCSDHLPYL--LNRIAEQA 88


>gi|261879033|ref|ZP_06005460.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270334366|gb|EFA45152.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 326

 Score = 53.7 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 47/136 (34%), Gaps = 12/136 (8%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           ++ L   IPI++ +      +  K       Y A  P+ ++   S   +  +   + +  
Sbjct: 20  LQHLKA-IPIADYLHTAYGIEPAKRYNGYALYHA--PYREDFNASMKVDFRENLCHDYGT 76

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAI---------AGVPLPVVDPKIEKKEKIQTDLI 118
              G  +  +  + GCS  E+++ LA                 +   + E++   +  ++
Sbjct: 77  GQGGSIIDLVMRMQGCSAYEAMKHLAGKRETIVAPSTFHREDHIEHRRDEQRANNRRHIL 136

Query: 119 RLIEVATDFFHHSLKN 134
            + +         L+ 
Sbjct: 137 SISDELPSHLQRYLRE 152


>gi|154503554|ref|ZP_02040614.1| hypothetical protein RUMGNA_01378 [Ruminococcus gnavus ATCC 29149]
 gi|260589933|ref|ZP_05855846.1| DNA primase [Blautia hansenii DSM 20583]
 gi|153795654|gb|EDN78074.1| hypothetical protein RUMGNA_01378 [Ruminococcus gnavus ATCC 29149]
 gi|260539740|gb|EEX20309.1| DNA primase [Blautia hansenii DSM 20583]
          Length = 367

 Score = 53.7 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 6/197 (3%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102
           CPF  E     + N  K  + C  C   G  L     L G S  E+ +++    G     
Sbjct: 5   CPFCGETKGKMNVNLQKNVFRCNRCDASGGMLELYGRLHGVSSAEANRQIREALGKGEYR 64

Query: 103 VDPKIEKKEKI----QTDLIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMF 157
            D ++  KE+       +L    +V    +   L     + +    L +RG+    IE+ 
Sbjct: 65  TDYQVVHKEEPVEIFNAELADA-DVIDRTYQEMLSLLTLNDKHQEDLKKRGLTKEQIEIQ 123

Query: 158 KLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217
           +    P            +     K +             ++    + ++ PIRS  G++
Sbjct: 124 RYRSVPLFGIKNMVQKLLESGQTVKGVPGFYEDQDGKWTINFTSKNSGILIPIRSVEGKI 183

Query: 218 IAFGGRTLSKGESVKYL 234
             F  R     E  KY+
Sbjct: 184 QGFQIRLDQVMEGRKYI 200


>gi|319639757|ref|ZP_07994487.1| DNA primase [Bacteroides sp. 3_1_40A]
 gi|317388574|gb|EFV69423.1| DNA primase [Bacteroides sp. 3_1_40A]
          Length = 318

 Score = 53.7 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I++    I I++ +    Y    ++  N      W   PF +E   SF  N  +  +Y 
Sbjct: 2  TIEEAKS-IRIADYLHSLGYSPVKQQGINL-----WYKSPFREESEASFKVNTEREQWYD 55

Query: 65 FSCHVKGDHLSF---LSALLGCSFIESVQRLAAI 95
          F     G+ ++    L A     +I  ++R+A  
Sbjct: 56 FGLGKGGNIIALAAHLYATDHVPYI--LKRIAEQ 87


>gi|237724861|ref|ZP_04555342.1| DNA primase PrmN1 [Bacteroides sp. D4]
 gi|229436599|gb|EEO46676.1| DNA primase PrmN1 [Bacteroides dorei 5_1_36/D4]
          Length = 318

 Score = 53.7 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I++    I I++ +    Y    ++  N      W   PF +E   SF  N  +  +Y 
Sbjct: 2  TIEEAKS-IRIADYLHSLGYSPVKQQGINL-----WYKSPFREESEASFKVNTEREQWYD 55

Query: 65 FSCHVKGDHLSF---LSALLGCSFIESVQRLAAI 95
          F     G+ ++    L A     +I  ++R+A  
Sbjct: 56 FGLGKGGNIIALAAHLYATDHVPYI--LKRIAEQ 87


>gi|208429910|ref|YP_002265463.1| hypothetical protein 39-O_gp55 [Clostridium phage 39-O]
 gi|190683393|gb|ACE82037.1| hypothetical protein [Clostridium phage 39-O]
 gi|327492249|gb|AEA86270.1| CHC2 zinc finger protein [Clostridium phage CP26F]
          Length = 322

 Score = 53.7 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHD-EKTPSFHCNDSKGF 61
           Y  + +  L+  I + + I +++  +      +  +Y   C  H  +   +   ND KG 
Sbjct: 217 YKEECLNRLISSISLKDFIQKHLGGE---FKYMNDNYIGRCVLHGGDNKGALVINDDKGI 273

Query: 62  YYCFS-CHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVV 103
           Y CF+ C   G+ +S    + G + F +    LA    + +P  
Sbjct: 274 YTCFTHCG-TGNLISVAKKVYGITNFSKIAFMLAQEYNLNIPEE 316


>gi|300776501|ref|ZP_07086359.1| conserved hypothetical protein [Chryseobacterium gleum ATCC
          35910]
 gi|300502011|gb|EFK33151.1| conserved hypothetical protein [Chryseobacterium gleum ATCC
          35910]
          Length = 278

 Score = 53.7 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 9  KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
          + +  ++ I  ++  Y      K N     Y+A      EKT S   +  K   + F   
Sbjct: 4  EQIKQNVSIRTVMESY-GLFPVKENKRTAFYFAL--DRQEKTASLSVDFIKNTAFDFGTG 60

Query: 69 VKGDHLSFLSALLGCSFIESVQRL 92
             D +S + A+  C+   +++ L
Sbjct: 61 KIYDVISIVQAINKCNVSTALEYL 84


>gi|303239067|ref|ZP_07325597.1| ATP-dependent chaperone ClpB [Acetivibrio cellulolyticus CD2]
 gi|302593405|gb|EFL63123.1| ATP-dependent chaperone ClpB [Acetivibrio cellulolyticus CD2]
          Length = 863

 Score = 53.7 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/207 (12%), Positives = 79/207 (38%), Gaps = 2/207 (0%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R ++     +     +  +++    + ++     + ++A++   +   
Sbjct: 321 YRKYIEKDAALERRFQPIVVDQPTVEDTISILRGLKERFEIHHGVRITDSAIIACSVLSN 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +     + + + S   E        +   +  +   +   +  R
Sbjct: 381 RYISDRFLPDKAIDLMDEAAAMIRTEIDSMPTELDEIQRRIMQLEIERQALKKEEDEASR 440

Query: 556 QVRDAGLWSATTEANIVD-VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +         ++     D ++  ++      KR + L  Q EE+++QI +     + +K 
Sbjct: 441 ERLSTLEKEISSLKEKSDGMKAQWEMEKENIKREKELKEQIEEVKRQIEEAERSYDLDKL 500

Query: 615 AIL-ISILHEVHIQIHQIESQEAMIEG 640
           A+L    L E+   + + + ++   EG
Sbjct: 501 AVLKHGRLPELQRSLEEEKQRKKSNEG 527


>gi|301165046|emb|CBW24614.1| putative transposon-related/mobilisation protein [Bacteroides
          fragilis 638R]
          Length = 318

 Score = 53.7 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I++    I I++ +    Y    ++  N      W   PF +E   SF  N  +  +Y 
Sbjct: 2  TIEEAKS-IRIADYLHSLGYSPVKQQGINL-----WYKSPFREESEASFKVNTEREQWYD 55

Query: 65 FSCHVKGDHLSF---LSALLGCSFIESVQRLAAI 95
          F     G+ ++    L A     +I  ++R+A  
Sbjct: 56 FGLGKGGNIIALAAHLYATDHVPYI--LKRIAEQ 87


>gi|58616337|ref|YP_195467.1| hypothetical protein p1B257 [Azoarcus sp. EbN1]
 gi|56315799|emb|CAI10443.1| hypothetical protein p1B257 [Aromatoleum aromaticum EbN1]
          Length = 457

 Score = 53.7 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 49/165 (29%), Gaps = 10/165 (6%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           S++     +  G L       E  L+  L+            +    + +   + ++  +
Sbjct: 2   SRKDNTPPVQPGVLPPHSIPAEQGLIGGLLLDNQFFDRVIDVVKVQHFYDQAHRLIYQAM 61

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
           F  + + K      +   L  +G       L++    A L      A        Y + +
Sbjct: 62  FDLYAQNKAVDLITVADSLAAKG------TLEQAGGFAYLAEVANGAISTAAISSYAKII 115

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
               R + + R       +I Q       +K   ++     + ++
Sbjct: 116 ----RSKAVLRHLGAACNRILQTIHDPGTKKAEEILDEAEALMLR 156


>gi|254420566|ref|ZP_05034290.1| hypothetical protein BBAL3_2876 [Brevundimonas sp. BAL3]
 gi|196186743|gb|EDX81719.1| hypothetical protein BBAL3_2876 [Brevundimonas sp. BAL3]
          Length = 406

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 17/111 (15%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-----S-FHCNDSKGFY--Y 63
              + +  + G+YV       N         CP+   K       S F    +K  +  Y
Sbjct: 10  KREVSLDAVAGRYVKLRGPDNNRRGA-----CPWCFPKRALAGGGSTFQAKLTKRTWRTY 64

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114
           C  C   GD +     +   + +E+V+ LA      LP   P+ +     +
Sbjct: 65  C--CGKFGDVVDLYCEMERKTPVEAVRDLAGST--ALPAPRPRAQPASPEK 111


>gi|196047978|ref|ZP_03115156.1| replicative DNA helicase [Bacillus cereus 03BB108]
 gi|196021234|gb|EDX59963.1| replicative DNA helicase [Bacillus cereus 03BB108]
          Length = 445

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 51/154 (33%), Gaps = 12/154 (7%)

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP--- 534
                 E  +L +++    ++++  + L    + +   Q ++  + S F E         
Sbjct: 9   PNYIEAEKMILGSILQEQELIEKVQEVLVVKDFYHINHQYIYEIMLSLFEENNPIDIISV 68

Query: 535 ------EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA--LYK 586
                 + +   +      ELL  +      +   +   E+          Q++A   Y 
Sbjct: 69  TGQVQDKNLIDNIPPSYLAELLDTVHSTNGISYYINLVKESAGKRNLHRIAQSIANDAYN 128

Query: 587 RFRLLSRQKEEIEKQIAQ-VTAKGEAEKTAILIS 619
             + L +   +  + +A+   ++G  ++    + 
Sbjct: 129 SDKDLDKIINQAGEDLAKVSDSQGRDDRMRSAME 162


>gi|270294843|ref|ZP_06201044.1| DNA primase [Bacteroides sp. D20]
 gi|270274090|gb|EFA19951.1| DNA primase [Bacteroides sp. D20]
          Length = 318

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I++    I I++ +    Y    ++  N      W   PF +E   SF  N  +  +Y 
Sbjct: 2  TIEEAKS-IRIADYLHSLGYSPVKQQGINL-----WYKSPFREESEASFKVNTEREQWYD 55

Query: 65 FSCHVKGDHLSF---LSALLGCSFIESVQRLAAI 95
          F     G+ ++    L A     +I  ++R+A  
Sbjct: 56 FGLGKGGNIIALAAHLYATDHVPYI--LKRIAEQ 87


>gi|71906859|ref|YP_284446.1| primary replicative DNA helicase [Dechloromonas aromatica RCB]
 gi|71846480|gb|AAZ45976.1| primary replicative DNA helicase [Dechloromonas aromatica RCB]
          Length = 469

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 6/157 (3%)

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
           +Q+    R+  S+L   ++       E ++L  L+            L D  +  +E ++
Sbjct: 2   NQRPQKPRIPDSTLDHLRVPPHSIEAEQSILGGLLLDNQAWDRMGDMLTDADFYRDEHRR 61

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL------LKQLDRQVRDAGLWSATTEANI 571
           ++  + +   + K      + + L   G GE       L +L      A       E   
Sbjct: 62  IFRQIRNLLEKAKPADVVTVAEALDAAGEGEQTGGLAYLGELAANTPSAANIKRYAEIVR 121

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    A A       L+    + E  + +  +K
Sbjct: 122 ERSVLRQLVATADEIAADALNPLGRDAETLLDEAESK 158


>gi|227502167|ref|ZP_03932216.1| replicative DNA helicase [Corynebacterium accolens ATCC 49725]
 gi|306834724|ref|ZP_07467791.1| replicative DNA helicase DnaB [Corynebacterium accolens ATCC 49726]
 gi|227076991|gb|EEI14954.1| replicative DNA helicase [Corynebacterium accolens ATCC 49725]
 gi|304569395|gb|EFM44893.1| replicative DNA helicase DnaB [Corynebacterium accolens ATCC 49726]
          Length = 477

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 56/183 (30%), Gaps = 13/183 (7%)

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
           E          NA  R  +    +  +    +   S +    E  +L  ++  P  + E 
Sbjct: 9   EQLPPEPPAPDNAVARRPRYQQDQPQRYEEYRQPPSDRE--AEQGVLGAMLLSPNTVMEV 66

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
            +EL    +       ++  +   +   +   P  +  RL           L+R      
Sbjct: 67  IEELEPDDFYYPAHALIYGAMLDLYAAGQDIDPLILSSRLDR------FNNLERVGGAPY 120

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG-EAEKTAILISI 620
           L +           + Y + +A     + + R+  +   ++ Q+   G E  +   +I  
Sbjct: 121 LHTLLATVPTAANARYYAEIVA----EKAVLRRLVDAGTRVVQLGFSGTEDAEIESVIDR 176

Query: 621 LHE 623
             +
Sbjct: 177 AQQ 179


>gi|46199013|ref|YP_004680.1| hypothetical protein TTC0705 [Thermus thermophilus HB27]
 gi|46196637|gb|AAS81053.1| conserved hypothetical protein [Thermus thermophilus HB27]
          Length = 411

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 12/212 (5%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK--PSL 482
              I  RL+ L  +         R   +  R + +    +  ++ +  +    +K   +L
Sbjct: 55  LAQISQRLKNLLGEKAALEKEIARLEAERRRLKQETARLKEEVRQTEARIAKLEKDLEAL 114

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           RE    L +  H          L    + +     + +        Q   L + +   L 
Sbjct: 115 RERLQALMVSLHRERAGRYLPLLRAESFTD---LAVRARWVGYISRQDTALVKTLQATLK 171

Query: 543 E-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
             R     L+ L + +       A T+  +   R+G +  LA  +R     +    +  +
Sbjct: 172 ALREEKARLELLVQSLTAKEAELAETQQALEAKRRGLEAVLAELRREEAGKKALLRDALE 231

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           + AQ+ +     + A L   L E   ++  ++
Sbjct: 232 ERAQLQS-----RLAELQKRLLEERQRLKALQ 258


>gi|52842291|ref|YP_096090.1| hypothetical protein lpg2077 [Legionella pneumophila subsp.
            pneumophila str. Philadelphia 1]
 gi|52629402|gb|AAU28143.1| TraI [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 1981

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/415 (11%), Positives = 119/415 (28%), Gaps = 34/415 (8%)

Query: 58   SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV-PLPVVDPKIEKKEKIQTD 116
             KG ++ FS  + G  +  + A    SF E++ + A++ G+  L  +   I+     + +
Sbjct: 1589 DKGLWHDFSDGIGGAPIQAIIARDKLSFKEALSQAASMVGINQLENLSIFIKAPISSKNE 1648

Query: 117  LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            L +L ++      + + +A+       L +  +    ++  +   + D           +
Sbjct: 1649 LQKLNDLEKK---NKVISAKSIWDGSILAKGTLAEKYLKQHRGIESIDKMDIRFWPTGSQ 1705

Query: 177  GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
              +  +       ++                  I +   +    G + +   +     N 
Sbjct: 1706 WKNCNEQGLLEDKVNKIP------------ALIIAARNEKNELTGVQRIYLDKQTASKN- 1752

Query: 237  PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
                     K + N   +   +  S     +    S + + EG+    S+  A  +  V 
Sbjct: 1753 ---------KFMDNPKLSKGIIDGSCGVIQKGMQGSRLYIAEGFETGASIALADSKATVL 1803

Query: 297  SLGTALTEYQLRLL--WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
                      L  +     S  +V+  D D    ++       +            V   
Sbjct: 1804 CSFGVSNMKNLSPIIKKFHSKEVVIAGDNDGEFAKSQQAIEKTINAFKQDNLSARAVFPD 1863

Query: 355  R--GE---DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
               G+   D +      G    +K L+ + +  +  +  +  E         + +     
Sbjct: 1864 GLQGKAKTDWNDIHLSKGIAEIQKQLMRKDIGAISSIVDKPIELPKTIADFVQIKSMKLS 1923

Query: 409  KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
             + I  I+D        + +   +    +             +K    + +    
Sbjct: 1924 GSQIISIRDNAATIDNKRDLNQLVAAYNKSQQALEKSGSFTPEKTLPTKTRSEIE 1978


>gi|189220414|ref|YP_001941054.1| Replicative DNA helicase [Methylacidiphilum infernorum V4]
 gi|189187272|gb|ACD84457.1| Replicative DNA helicase [Methylacidiphilum infernorum V4]
          Length = 472

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 23/179 (12%)

Query: 483 REAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            E A+L   + +P +      + +A   +     + L+  L     +        +HQ L
Sbjct: 25  AEKAILGLALTNPELVFDRIRERIAADDFYVPSHRLLFEVLCDMHSKSIPIDLTTVHQYL 84

Query: 542 CERGFGE-------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-----ALALYKRFR 589
            +    E       L   +        L S         V +   Q       ++Y+   
Sbjct: 85  IDHHLEEKMGGAVLLADLVASFATHLNLESYIKILKDKSVLRKLHQVALNIVQSIYENSH 144

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            + +  ++ EK+I ++T   +   T   +    E+   I        +I+ F K  GRL
Sbjct: 145 SVIQVLDQAEKEIFEIT---DLTITRSTVKASIEIEKAIE-------LIDCFHKRKGRL 193


>gi|74180977|dbj|BAE27768.1| unnamed protein product [Mus musculus]
          Length = 2031

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 103/287 (35%), Gaps = 22/287 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                   +   EKL ++     +     E E        ++ ELE    +    +++++ 
Sbjct: 941  EMETMQSQLMAEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEE 1000

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R  Y QA + ++QQ  Q+   +        +K    +       + ++   +  +     
Sbjct: 1001 RCQYLQAEKKKMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCK 1060

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFVE------QKY 531
              +E  LL         + E    L +    +  L KL      + +D  E      ++ 
Sbjct: 1061 LAKEKKLLE------DRVAEFTTNLMEEEEKSKSLAKLKNKHEAMITDLEERLRREEKQR 1114

Query: 532  FLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
               E+  ++L        + + +L  Q+ +  +  A  E    +++    +      +  
Sbjct: 1115 QELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKE---EELQAALARVEEEAAQKN 1171

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
            +  ++  E+E QI+++    E+E+ +   +     ++  ++  ++++
Sbjct: 1172 MALKKIRELETQISELQEDLESERASRNKAEKQKRDLGEELEALKTE 1218



 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 70/227 (30%), Gaps = 15/227 (6%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            + ++ +    + +R+   +L  +            K     +D +       ++     K
Sbjct: 1650 QSEEKKKQLVRQVREMEAELEDERKQRSMAMAARKKLEMDLKDLEAHIDTANKNREEAIK 1709

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +K   +    +  L         + + LA  + +  +L+ + + +     E       
Sbjct: 1710 QLRKLQAQMKDCMREL---DDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERA 1766

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +   +   EL  ++        L           + Q  ++         L++ + 
Sbjct: 1767 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELINDRL 1823

Query: 596  EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIES 633
            ++   QI Q+      E++           L     E+  ++ ++ES
Sbjct: 1824 KKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKAKLQEMES 1870


>gi|297544923|ref|YP_003677225.1| regulatory protein DeoR [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842698|gb|ADH61214.1| regulatory protein DeoR [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 675

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/388 (13%), Positives = 89/388 (22%), Gaps = 64/388 (16%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102
           C +HD++ PS   N   GFY C  C        FL  +                G+    
Sbjct: 45  CLYHDDRKPSATVNIKSGFYVCHVCG-SFSPYRFLVEI---------------VGIAPED 88

Query: 103 VDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162
                        +L    E    + H                +       I+  K    
Sbjct: 89  ASYF---INDYLRELYVKDERTGRYIHAFPHYDPSHTYIPTPGQEEEFEEFIKEAKARLR 145

Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222
           P+          +    E         +  D      +             RG++ A  G
Sbjct: 146 PELPIVQEYITARGIKYEMLERFEWGYVPHDEETGQVECL-----VVPFRVRGKIRAIRG 200

Query: 223 RTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD 282
           R                             GA+   + S+         S  ++VEG  D
Sbjct: 201 RAYD-----------------------GRKGAVKNSRFSLWNLDSLEGKSQAVIVEGESD 237

Query: 283 VL----SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLV 338
            L    +L   GV   V S+       + +  +     + L    DD        AI ++
Sbjct: 238 ALRTIQALEACGVDIPVVSVPGNNFRKEWKREFDGIRTVYLIPQDDDASANFVRSAIAVL 297

Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398
                    + +     G+D   ++                   D               
Sbjct: 298 GEERCKVVELPWKRGDVGKDICEWLTRNN-------------HTDQELVELIPLEEHQDR 344

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQ 426
             R      L        D  +R   ++
Sbjct: 345 FSRYYRVEELLKREPAEPDWLVRGMIAR 372


>gi|54307153|ref|YP_133704.1| PrmN1 [Bacteroides uniformis]
 gi|160887899|ref|ZP_02068902.1| hypothetical protein BACUNI_00303 [Bacteroides uniformis ATCC
          8492]
 gi|218131380|ref|ZP_03460184.1| hypothetical protein BACEGG_02995 [Bacteroides eggerthii DSM
          20697]
 gi|237717335|ref|ZP_04547816.1| DNA primase [Bacteroides sp. D1]
 gi|262406100|ref|ZP_06082650.1| PrmN1 [Bacteroides sp. 2_1_22]
 gi|8308028|gb|AAF74445.1|AF238307_9 PrmN1 [Bacteroides uniformis]
 gi|156862585|gb|EDO56016.1| hypothetical protein BACUNI_00303 [Bacteroides uniformis ATCC
          8492]
 gi|217986312|gb|EEC52649.1| hypothetical protein BACEGG_02995 [Bacteroides eggerthii DSM
          20697]
 gi|229443318|gb|EEO49109.1| DNA primase [Bacteroides sp. D1]
 gi|262356975|gb|EEZ06065.1| PrmN1 [Bacteroides sp. 2_1_22]
          Length = 318

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I++    I I++ +    Y    ++  N      W   PF +E   SF  N  +  +Y 
Sbjct: 2  TIEEAKS-IRIADYLHSLGYSPVKQQGINL-----WYKSPFREESEASFKVNTEREQWYD 55

Query: 65 FSCHVKGDHLSF---LSALLGCSFIESVQRLAAI 95
          F     G+ ++    L A     +I  ++R+A  
Sbjct: 56 FGLGKGGNIIALAAHLYATDHVPYI--LKRIAEQ 87


>gi|70732302|ref|YP_262058.1| hypothetical protein PFL_4979 [Pseudomonas fluorescens Pf-5]
 gi|68346601|gb|AAY94207.1| conserved domain protein [Pseudomonas fluorescens Pf-5]
          Length = 991

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 10  DLLIHI--PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEK-TPSFHCNDSKGFYYCFS 66
           D+       I  ++  ++     K      +Y A  P   +K T S   N SKG +  F+
Sbjct: 43  DVKSAALKDIDRVLAHWLP--NGKRVDGGKEYTAPNPTRTDKRTGSLKVNLSKGTWADFA 100

Query: 67  CH-VKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
                GD +  +  L G + +E+  +LA +  V
Sbjct: 101 TGDKGGDLIDLVRYLDGGTDVEACNKLADLLSV 133


>gi|55981039|ref|YP_144336.1| hypothetical protein TTHA1070 [Thermus thermophilus HB8]
 gi|55772452|dbj|BAD70893.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 411

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 12/212 (5%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK--PSL 482
              I  RL+ L  +         R   +  R + +    +  ++ +  +    +K   +L
Sbjct: 55  LAQISQRLKNLLGEKAALEKEIARLEAERRRLKQETARLKEEVRQTEARIAKLEKDLEAL 114

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           RE    L +  H          L    + +     + +        Q   L + +   L 
Sbjct: 115 RERLQALMVSLHRERAGRYLPLLRAESFTD---LAVRARWVGYISRQDTALVKTLQATLK 171

Query: 543 E-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
             R     L+ L + +       A T+  +   R+G +  LA  +R     +    +  +
Sbjct: 172 ALREEKARLELLVQSLTAKEAELAETQRALEAKRRGLEAVLAELRREEAGKKALLRDALE 231

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           + AQ+ +     + A L   L E   ++  ++
Sbjct: 232 ERAQLQS-----RLAELQKRLLEERQRLKALQ 258


>gi|296411052|ref|XP_002835249.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295628024|emb|CAZ79370.1| unnamed protein product [Tuber melanosporum]
          Length = 2201

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 88/253 (34%), Gaps = 17/253 (6%)

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
           M+ +R  +           +L + +K  +             + I+     +  +     
Sbjct: 715 MIIQRNLQVYLDLCESPWWKLFMKMKPLLGATHSSSEVKKRDEMIQKMEAHMQAEAENRQ 774

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAILQE 500
                  K +A     +   +     +L K ++ K+   REA L   L   ++   +L++
Sbjct: 775 RLEEERRKADAELHKVQKTLESERALALDKEEIFKRMQQREAELSEKLAGALDDQDVLED 834

Query: 501 QYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           Q  EL +  +  + + +     L             ++  +L +    E+  +L+   R+
Sbjct: 835 QIDELMSAKKKADEQAEAWRKELEQA---------GDLIAKLEDEKH-EMAARLEFLDRE 884

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLL-SRQKEEIEKQIAQVTAKGEAEKTAILI 618
               +    A   D     +Q + L K    L  R+  + E+ + +   + + + +   +
Sbjct: 885 LEA-AEKQRAERGDAEDRLEQEVHLLKSHLALKERKIHDYEEALRKSDHELDEKLSQTNL 943

Query: 619 SILHEVHIQIHQI 631
           S L E   QI ++
Sbjct: 944 S-LQEGQKQIREL 955


>gi|241680853|ref|XP_002411576.1| transcription initiation factor TFII-D subunit 4B, putative [Ixodes
           scapularis]
 gi|215504312|gb|EEC13806.1| transcription initiation factor TFII-D subunit 4B, putative [Ixodes
           scapularis]
          Length = 453

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 53/139 (38%), Gaps = 8/139 (5%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +  + N   +++ S      +E+       +     +     L+++L   V +  L + 
Sbjct: 244 ENFLFTNPLQRRITSVAVKYGIEEIPSDVVALISHATQERLKSLVQKL-GIVAEHRLENI 302

Query: 566 TTEANIV-----DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +++          +  + + L   ++ R    Q+ EI  + A+  +K E  +   L   
Sbjct: 303 KSDSRYEVTQDVKAQLKFLEELDRLEKKRH-EEQEREILLRAAKSRSKMEDPEQLKLKQK 361

Query: 621 LHEVHI-QIHQIESQEAMI 638
             E+   ++ ++  +EA +
Sbjct: 362 AKEMQKAEMEEMRQREANM 380


>gi|288925609|ref|ZP_06419541.1| mobilizable transposon, excision protein [Prevotella buccae D17]
 gi|288337547|gb|EFC75901.1| mobilizable transposon, excision protein [Prevotella buccae D17]
          Length = 281

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75
          P+  E+TPSF  + +K  ++ F     GD   
Sbjct: 35 PYRTERTPSFKVDTAKNVWFDFGTGKGGDIFD 66


>gi|229822649|ref|YP_002884175.1| replicative DNA helicase [Beutenbergia cavernae DSM 12333]
 gi|229568562|gb|ACQ82413.1| replicative DNA helicase [Beutenbergia cavernae DSM 12333]
          Length = 457

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 47/157 (29%), Gaps = 10/157 (6%)

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
            +      +   +    E + L  ++     + +  + L    +     + ++  +   +
Sbjct: 6   AEPRSDFDRTPPQDVAAEQSALGGMLLSKDAIADVVEVLRAQDFYRPAHEMVYEAILDLY 65

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
              +      +   L +RG   LL ++        L SA   A             A   
Sbjct: 66  GRGQPTDAITVSDELTKRG---LLARVGGSAYLHTLISAVPTAAN-------AGYYARIV 115

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
           R R + R+  E   +I Q+    +      L++    
Sbjct: 116 RERSVLRKLVEAGTRIVQLGYATDGGDVDELVNTAQA 152


>gi|332668584|ref|YP_004451591.1| replicative DNA helicase [Cellulomonas fimi ATCC 484]
 gi|332337621|gb|AEE44204.1| replicative DNA helicase [Cellulomonas fimi ATCC 484]
          Length = 459

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/173 (10%), Positives = 52/173 (30%), Gaps = 14/173 (8%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P       +    +   +    E ++L  ++     + +  +++    +     + ++ 
Sbjct: 10  APPDSGRGGNGGFDRTPPQDLEAERSVLGGMMISKDAIADVIEQIKGTDFYRPAHEAVYD 69

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +   +   +      +   L +RG    + ++        L S+   A           
Sbjct: 70  AILDLYGRGEPADAITVADELTKRG---EIGRIGGAPYLHTLISSVPTAAN-------AG 119

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGE----AEKTAILISILHEVHIQIH 629
             A   R R + R+  E   +I Q+    +     E      + ++ V  +  
Sbjct: 120 YYARIVRERAILRKLVEAGTRIVQLGYGTDGGDVDEIVNNAQAEVYAVTERRA 172


>gi|212702691|ref|ZP_03310819.1| hypothetical protein DESPIG_00719 [Desulfovibrio piger ATCC
          29098]
 gi|212673851|gb|EEB34334.1| hypothetical protein DESPIG_00719 [Desulfovibrio piger ATCC
          29098]
          Length = 551

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 21/84 (25%)

Query: 33 NAVKGDYWACCPFHDE---KTPSFHCNDS--------------KGFYYCFSCHVKGDHLS 75
              G +   CP       K+  F                   KG + C  C   GD ++
Sbjct: 16 KRQGGAWNGPCPLCGGEPGKSDRFMIWPDRAENLGEVCAQNGLKGIWSCRQCGASGDTIA 75

Query: 76 FLSALLGCSFIESVQRLAAIAGVP 99
          +L+ + G  F  ++  L    G+ 
Sbjct: 76 YLTKVEGMDFKTALAEL----GIE 95


>gi|302339365|ref|YP_003804571.1| replicative DNA helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301636550|gb|ADK81977.1| replicative DNA helicase [Spirochaeta smaragdinae DSM 11293]
          Length = 444

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 7/157 (4%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
            S  +K K+    S  EAA L  ++  P  +    + L    + +   + ++S + S F 
Sbjct: 2   NSPSLKDKVPPHNSEAEAATLGAMLLDPEAVGIVLRHLRPEDFYSGYNRNIYSAILSLFN 61

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           + +      +   L   G      +L+     +   + T+        + Y + +     
Sbjct: 62  KGQEVDLITLTDELRATG------KLEASGGASYATTLTSVVPTSANVEYYAKIVKDSSI 115

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            R L +   E+  Q +   +    E        + ++
Sbjct: 116 RRSLLKIAAELTSQ-SHDESIDSRELIEEAERKIFDI 151


>gi|297193327|ref|ZP_06910725.1| replicative DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197718355|gb|EDY62263.1| replicative DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 492

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 66/230 (28%), Gaps = 30/230 (13%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
                              ++ R R+  G          V  +        E ++L  ++
Sbjct: 17  GDRLPASRQRRHEGRGREDQHDRGRESGGWDGGSPGFERVPPQDLD----AEQSVLGGML 72

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                + +  + +    +     + ++  +   + + +   P  +   L +RG      +
Sbjct: 73  LSKDAIADVVEIIKGHDFYRPAHETVYQAILDLYAKGEPADPITVAAELVKRG------E 126

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE-- 610
           + R      L +             Y + +      R + R+  E   +I Q+    +  
Sbjct: 127 ITRVGGAPYLHTLVQSVPTAANASYYAEIVH----ERAVLRRLVEAGTKITQMGYAADGD 182

Query: 611 -AEKTAILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646
             E      + ++ V  Q                ++  EA+    G+M+G
Sbjct: 183 VDEIVNSAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 232


>gi|160934644|ref|ZP_02082030.1| hypothetical protein CLOLEP_03517 [Clostridium leptum DSM 753]
 gi|156866097|gb|EDO59469.1| hypothetical protein CLOLEP_03517 [Clostridium leptum DSM 753]
          Length = 386

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 98/356 (27%), Gaps = 32/356 (8%)

Query: 41  ACCPFHDEKTPSFHCN--DSKGFYYCFSCHVKGDHLSFLSALL----GCSFIESVQRLAA 94
           A CP+  +     + +    K  ++C +C   G+ ++  +         +  E+   L  
Sbjct: 34  ARCPYCGDYKYRMYLSRQPEKSTFWCHNCGTGGNAVTLYADFNPGGRRLTTKEAYLEL-- 91

Query: 95  IAGVPLPVVDPKIEKKEKIQ---TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDS 151
              +  P V       E  +     +  L E +  +         +++    L  RG+  
Sbjct: 92  ---LDHPQVHTGESPYEHDRYIPEPIRPLHERSQIYLELLSLLTLEEKHRQNLLRRGLSD 148

Query: 152 HAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIR 211
             I        P +    R+ +  +  S   +         +          + ++ P+ 
Sbjct: 149 EIIRGNMYRSIPTNWKQRRQAVE-QLASRYDLSGMPGFYTRNFRWDLSSCRYSGILIPVC 207

Query: 212 SSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271
               ++     R L +           T    KG+             K   ++    SS
Sbjct: 208 DKDSRIQGLQLR-LDEPPPKTITLPDGTKATKKGERFRWLSTGGMSNGKKFYENGTGISS 266

Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSL------------GTALTEYQLRLLWKLSPRIVL 319
              ++ +   D L + +  ++  ++S                    +  +      RI+ 
Sbjct: 267 YIHVVGDLSCDTLHITEGAMKADIASFLSGGELFIGLTGVQNTRYLEDVVRQLKPKRILE 326

Query: 320 CFDGD----DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371
           C D D        RA  K   +            + +  +G D         +   
Sbjct: 327 CVDMDCRTNPHVQRAQAKIRAICTPLCEEYRLFTWPVEQKGIDDYLLFEKLKREHL 382


>gi|306778879|ref|ZP_07417216.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu002]
 gi|306787034|ref|ZP_07425356.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu004]
 gi|306791592|ref|ZP_07429894.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu005]
 gi|308328208|gb|EFP17059.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu002]
 gi|308336326|gb|EFP25177.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu004]
 gi|308339929|gb|EFP28780.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu005]
          Length = 874

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P       S   G+   +    E ++L  ++     + +  + L    +     Q ++ 
Sbjct: 8   APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +   +   +      +   L  RG   LL+++        L S    A           
Sbjct: 68  AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630
             A     + L R+  E   ++ Q           AE      + +++V   ++ +
Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173


>gi|289760156|ref|ZP_06519534.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis T85]
 gi|289715720|gb|EFD79732.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis T85]
          Length = 461

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P       S   G+   +    E ++L  ++     + +  + L    +     Q ++ 
Sbjct: 8   APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +   +   +      +   L  RG   LL+++        L S    A           
Sbjct: 68  AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630
             A     + L R+  E   ++ Q           AE      + +++V   ++ +
Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173


>gi|289747827|ref|ZP_06507205.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis 02_1987]
 gi|289688355|gb|EFD55843.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis 02_1987]
          Length = 347

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P       S   G+   +    E ++L  ++     + +  + L    +     Q ++ 
Sbjct: 8   APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +   +   +      +   L  RG   LL+++        L S    A           
Sbjct: 68  AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630
             A     + L R+  E   ++ Q           AE      + +++V   ++ +
Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173


>gi|289552307|ref|ZP_06441517.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis KZN 605]
 gi|289436939|gb|EFD19432.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis KZN 605]
          Length = 360

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P       S   G+   +    E ++L  ++     + +  + L    +     Q ++ 
Sbjct: 8   APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +   +   +      +   L  RG   LL+++        L S    A           
Sbjct: 68  AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630
             A     + L R+  E   ++ Q           AE      + +++V   ++ +
Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173


>gi|289445584|ref|ZP_06435328.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis CPHL_A]
 gi|289418542|gb|EFD15743.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis CPHL_A]
          Length = 772

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P       S   G+   +    E ++L  ++     + +  + L    +     Q ++ 
Sbjct: 8   APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +   +   +      +   L  RG   LL+++        L S    A           
Sbjct: 68  AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630
             A     + L R+  E   ++ Q           AE      + +++V   ++ +
Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173


>gi|288962768|ref|YP_003453062.1| replicative DNA helicase [Azospirillum sp. B510]
 gi|288915034|dbj|BAI76518.1| replicative DNA helicase [Azospirillum sp. B510]
          Length = 501

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 54/179 (30%), Gaps = 24/179 (13%)

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
           + +      P          + +        E ALL  ++ +    ++  + L    + +
Sbjct: 2   SNQTSSLFDPRPSSAVKPTAEYRTPPNNEEAEQALLGAILVNNKAYEKVGEFLRPEHFYD 61

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQ------RLCERGFGELLKQLD------------ 554
              Q++++ +       +   P  +         L   G    L +L             
Sbjct: 62  PAHQRIFAAINKMIDRGQIANPVTLKSLFDNDPELAVEGGSAYLAELAANVVTVVNAADY 121

Query: 555 -RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
            + + D  +     E     V + Y+  L +         Q  E EKQ+  + + G+ +
Sbjct: 122 GKTIHDLFIRRQLIEVGTDMVNEAYRHDLDV-----TALDQIGEAEKQLFDLASTGDVQ 175


>gi|288572894|ref|ZP_06391251.1| replicative DNA helicase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568635|gb|EFC90192.1| replicative DNA helicase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 451

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 50/158 (31%), Gaps = 18/158 (11%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S  +  ++  +    E A++ + +    +L +  + L+   + +   Q  +  L     +
Sbjct: 2   SPSIYDRVPPQNLEAERAVIGSCLMDKDVLIQISEILSPEDFRDKNYQVAFDVLTDMVHQ 61

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            +        + L  RG  E    L  Q     +  +   A   +      +  A+ +R 
Sbjct: 62  DRPVDSLTFLEELSRRGLSE---SLGGQAFIVAVMDSVPTAANAEYHAKIVRDKAVLRRL 118

Query: 589 ---------------RLLSRQKEEIEKQIAQVTAKGEA 611
                          R +    EE E+ I +V+     
Sbjct: 119 ISTGTSIARMGYSEDREIDELLEEAERAIFEVSRHRNE 156


>gi|215432966|ref|ZP_03430885.1| replicative DNA helicase [Mycobacterium tuberculosis EAS054]
 gi|289756117|ref|ZP_06515495.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis EAS054]
 gi|289696704|gb|EFD64133.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis EAS054]
          Length = 268

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P       S   G+   +    E ++L  ++     + +  + L    +     Q ++ 
Sbjct: 8   APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +   +   +      +   L  RG   LL+++        L S    A           
Sbjct: 68  AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630
             A     + L R+  E   ++ Q           AE      + +++V   ++ +
Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173


>gi|189095961|pdb|2R5U|A Chain A, Crystal Structure Of The N-Terminal Domain Of Dnab
           Helicase From Mycobacterium Tuberculosis
 gi|189095962|pdb|2R5U|B Chain B, Crystal Structure Of The N-Terminal Domain Of Dnab
           Helicase From Mycobacterium Tuberculosis
 gi|189095963|pdb|2R5U|C Chain C, Crystal Structure Of The N-Terminal Domain Of Dnab
           Helicase From Mycobacterium Tuberculosis
 gi|189095964|pdb|2R5U|D Chain D, Crystal Structure Of The N-Terminal Domain Of Dnab
           Helicase From Mycobacterium Tuberculosis
 gi|189095965|pdb|2R5U|E Chain E, Crystal Structure Of The N-Terminal Domain Of Dnab
           Helicase From Mycobacterium Tuberculosis
 gi|189095966|pdb|2R5U|F Chain F, Crystal Structure Of The N-Terminal Domain Of Dnab
           Helicase From Mycobacterium Tuberculosis
          Length = 200

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P       S   G+   +    E ++L  ++     + +  + L    +     Q ++ 
Sbjct: 11  APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 70

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +   +   +      +   L  RG   LL+++        L S    A           
Sbjct: 71  AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 120

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630
             A     + L R+  E   ++ Q           AE      + +++V   ++ +
Sbjct: 121 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 176


>gi|254366516|ref|ZP_04982560.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis str.
           Haarlem]
 gi|134152028|gb|EBA44073.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis str.
           Haarlem]
          Length = 874

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P       S   G+   +    E ++L  ++     + +  + L    +     Q ++ 
Sbjct: 8   APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +   +   +      +   L  RG   LL+++        L S    A           
Sbjct: 68  AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630
             A     + L R+  E   ++ Q           AE      + +++V   ++ +
Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173


>gi|83319407|ref|YP_424099.1| replicative DNA helicase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|83283293|gb|ABC01225.1| replicative DNA helicase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 442

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 59/167 (35%), Gaps = 14/167 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L   ++    L +    L    +     + ++  +     + K   P  +  RL 
Sbjct: 13  AERFVLGVAMSFSNALADIISVLKVDDFSIEANKYIYQAIIDLNSKNKSVSPISVINRL- 71

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                E + +LDR   D  ++    E       + Y   +      R L    +E+E  +
Sbjct: 72  -----EAINKLDRVGGDVVVYEIAAENYTDQGLEEYIDVIHKSGVIRKLDAVIKELE--L 124

Query: 603 AQVTAKGEAEKTAILIS-ILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            + +   + ++   +    L ++ + I + E     IE  G ++ R+
Sbjct: 125 KRNSGNTDIDELLKVAQTKLLDIDLSIKRFE-----IEAVGDVAKRV 166


>gi|15607200|ref|NP_214572.1| replicative DNA helicase [Mycobacterium tuberculosis H37Rv]
 gi|148659818|ref|YP_001281341.1| replicative DNA helicase [Mycobacterium tuberculosis H37Ra]
 gi|167970584|ref|ZP_02552861.1| replicative DNA helicase [Mycobacterium tuberculosis H37Ra]
 gi|306974469|ref|ZP_07487130.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu010]
 gi|307082177|ref|ZP_07491347.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu011]
 gi|307082517|ref|ZP_07491630.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu012]
 gi|3915677|sp|P71715|DNAB_MYCTU RecName: Full=Replicative DNA helicase; Contains: RecName:
           Full=Endonuclease PI-MtuHIP; AltName: Full=Mtu dnaB
           intein
 gi|3250719|emb|CAB02519.1| PROBABLE REPLICATIVE DNA HELICASE DNAB [Mycobacterium tuberculosis
           H37Rv]
 gi|148503970|gb|ABQ71779.1| replicative DNA helicase [Mycobacterium tuberculosis H37Ra]
 gi|308356253|gb|EFP45104.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu010]
 gi|308360243|gb|EFP49094.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu011]
 gi|308367743|gb|EFP56594.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu012]
          Length = 874

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P       S   G+   +    E ++L  ++     + +  + L    +     Q ++ 
Sbjct: 8   APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +   +   +      +   L  RG   LL+++        L S    A           
Sbjct: 68  AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630
             A     + L R+  E   ++ Q           AE      + +++V   ++ +
Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173


>gi|15839435|ref|NP_334472.1| replicative DNA helicase [Mycobacterium tuberculosis CDC1551]
 gi|31791235|ref|NP_853728.1| replicative DNA helicase [Mycobacterium bovis AF2122/97]
 gi|121635968|ref|YP_976191.1| replicative DNA helicase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148821248|ref|YP_001286002.1| replicative DNA helicase [Mycobacterium tuberculosis F11]
 gi|224988441|ref|YP_002643108.1| replicative DNA helicase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253796973|ref|YP_003029974.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis KZN 1435]
 gi|254233457|ref|ZP_04926783.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis C]
 gi|297632528|ref|ZP_06950308.1| replicative DNA helicase [Mycobacterium tuberculosis KZN 4207]
 gi|297729499|ref|ZP_06958617.1| replicative DNA helicase [Mycobacterium tuberculosis KZN R506]
 gi|306782668|ref|ZP_07420990.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu003]
 gi|306801630|ref|ZP_07438298.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu008]
 gi|306805839|ref|ZP_07442507.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu007]
 gi|306970236|ref|ZP_07482897.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu009]
 gi|313656828|ref|ZP_07813708.1| replicative DNA helicase [Mycobacterium tuberculosis KZN V2475]
 gi|38257379|sp|P59966|DNAB_MYCBO RecName: Full=Replicative DNA helicase; Contains: RecName:
           Full=Endonuclease PI-MboHIP; AltName: Full=Mbo dnaB
           intein
 gi|13879107|gb|AAK44286.1| replicative DNA helicase, intein-containing [Mycobacterium
           tuberculosis CDC1551]
 gi|31616820|emb|CAD92921.1| PROBABLE REPLICATIVE DNA HELICASE DNAB [Mycobacterium bovis
           AF2122/97]
 gi|121491615|emb|CAL70073.1| Probable replicative dna helicase dnaB [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124603250|gb|EAY61525.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis C]
 gi|148719775|gb|ABR04400.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis F11]
 gi|224771554|dbj|BAH24360.1| replicative DNA helicase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253318476|gb|ACT23079.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis KZN 1435]
 gi|308332515|gb|EFP21366.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu003]
 gi|308347729|gb|EFP36580.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu007]
 gi|308351646|gb|EFP40497.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu008]
 gi|308352353|gb|EFP41204.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu009]
 gi|323717397|gb|EGB26602.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis CDC1551A]
 gi|326905818|gb|EGE52751.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis W-148]
 gi|328456763|gb|AEB02186.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis KZN 4207]
          Length = 874

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P       S   G+   +    E ++L  ++     + +  + L    +     Q ++ 
Sbjct: 8   APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +   +   +      +   L  RG   LL+++        L S    A           
Sbjct: 68  AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630
             A     + L R+  E   ++ Q           AE      + +++V   ++ +
Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173


>gi|227506316|ref|ZP_03936365.1| replicative DNA helicase [Corynebacterium striatum ATCC 6940]
 gi|227197128|gb|EEI77176.1| replicative DNA helicase [Corynebacterium striatum ATCC 6940]
          Length = 478

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 53/201 (26%), Gaps = 7/201 (3%)

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
            A+       +++ +     + +        E  +L  ++  P  + E  +EL    +  
Sbjct: 20  PAQEERPYRRNRQDVSKRYGEFRQPPSDREAEQGVLGAMLLSPNTVMEVIEELEPDDFYY 79

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE-------LLKQLDRQVRDAGLWSA 565
                ++  +   +          +  RL      E       L   L      A     
Sbjct: 80  PAHALIYQAMVDLYAAGTDIDAVIVASRLDRYNNLERVGGAPYLHTLLATVPTAANARYY 139

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
                   V +    A     +      +  EIE  + +   +  A            + 
Sbjct: 140 AEIVAEKAVLRKLVDAGTRVVQLGFEGAEDAEIESVLDRAQQEVFAVAQKKTTEDYQVLG 199

Query: 626 IQIHQIESQEAMIEGFGKMSG 646
             I     + AM++  G  +G
Sbjct: 200 KLIDPTIDELAMLQQNGIEAG 220


>gi|218296446|ref|ZP_03497189.1| SMC domain protein [Thermus aquaticus Y51MC23]
 gi|218243240|gb|EED09771.1| SMC domain protein [Thermus aquaticus Y51MC23]
          Length = 962

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 73/227 (32%), Gaps = 27/227 (11%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            +  R+  L  K               AR    +  ++ L     ++ K     + R   
Sbjct: 238 ELLRRMALLEAKRERLTKEASEMENLRARLALSEEAARALPLWEDLRRKEGALAATRAR- 296

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
               L      ++   + L  + +D   LQ+    L      Q     E + +R+     
Sbjct: 297 ----LKEAEGAVKGLEEALKALAFDEGALQEARDALLKA---QGLRALEALLRRVG--PL 347

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
                +LD +  +A L     EA +  +  G  Q     +R +    Q EE  +++A+  
Sbjct: 348 DHPAPRLDPERLEAVLE---EEAKLERLLSGLSQLEEARRRLKAKEDQLEEARQRLAKTE 404

Query: 607 AKGEAEKTA--------------ILISILHEVHIQIHQIESQEAMIE 639
             G  ++                 L   L  +  ++  +E +EA ++
Sbjct: 405 EAGREKRKEVEDLKVRLQGAEAHRLQERLKALEEELRSLEKEEAGLK 451



 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 75/234 (32%), Gaps = 20/234 (8%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              +  R  +L +       G        AR   +K  +            L K     E
Sbjct: 495 LPDLEARRWELEEALR-RVQGRRGEVLGEARSLKEKLDTLAAEPVPGDPEALKKALEEAE 553

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-----------FSDFVEQKYFL 533
            AL      +  I  E    + ++     E ++L +                  E+K  L
Sbjct: 554 EALQALRDTYKEIGGEIKGLVEEVNQLRQEEERLRAQAGEASLGEVEEGLRRLREEKAAL 613

Query: 534 PEEIHQRLCER----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              + Q + ER    G    LK+L+ +VR               +    Q+  AL  +  
Sbjct: 614 GAGLRQHIQERTEGLGVAAYLKRLEARVRALEAQEREYRRLRDRMADLAQKVSALKAQEA 673

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ----IESQEAMIE 639
             ++   E E+++  +  + EA   A+       +  +I +    ++  EA+++
Sbjct: 674 EQAKALAEAEERVKGLMPEAEARAHALSPEEREALETRIRRHENELKDVEALLK 727


>gi|303258306|ref|ZP_07344312.1| replicative DNA helicase [Burkholderiales bacterium 1_1_47]
 gi|331000188|ref|ZP_08323877.1| replicative DNA helicase [Parasutterella excrementihominis YIT
           11859]
 gi|302858925|gb|EFL82010.1| replicative DNA helicase [Burkholderiales bacterium 1_1_47]
 gi|329572611|gb|EGG54250.1| replicative DNA helicase [Parasutterella excrementihominis YIT
           11859]
          Length = 454

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 6/159 (3%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           +    +    L       E ALL  L+ +P         L    + N   + ++  +FS 
Sbjct: 1   MSAPIIDSLPLPPHSPEAEHALLGALLANPESFHLIEPPLEPSDFYNYANRLIYQAIFSL 60

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
             + K      +   L E G  +    L+   R       T           Y + +   
Sbjct: 61  ASQGKPADVLTVSDLLREIGNEKETGGLEYLNR------LTESYASAANLSEYARIVKDK 114

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
              R L  +  ++E ++         +    + S   ++
Sbjct: 115 ALKRNLISKLAQLEAEVNSDRGASSEDLLDRVQSEFLKM 153


>gi|91200197|emb|CAJ73241.1| hypothetical zinc finger containing protein [Candidatus Kuenenia
          stuttgartiensis]
 gi|91200350|emb|CAJ73396.1| hypothetical zinc finger containing protein [Candidatus Kuenenia
          stuttgartiensis]
 gi|91201279|emb|CAJ74339.1| hypothetical zinc finger containing protein [Candidatus Kuenenia
          stuttgartiensis]
 gi|91201371|emb|CAJ74431.1| hypothetical zinc finger containing protein [Candidatus Kuenenia
          stuttgartiensis]
 gi|91202009|emb|CAJ75069.1| hypothetical zinc finger containing protein [Candidatus Kuenenia
          stuttgartiensis]
 gi|91202191|emb|CAJ75251.1| hypothetical zinc finger containing protein [Candidatus Kuenenia
          stuttgartiensis]
          Length = 100

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 3  YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
          +    ++ L   IPI  LI   +    +     +G +   CP   E   S   N +    
Sbjct: 5  FSPQLLRSLRNDIPIDRLIADVLSIPHK---YSEGYFRFLCPLCSEFN-SAT-NPNTNLA 59

Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
           CF C    + +  +      SF ++V  L
Sbjct: 60 RCFRCKKNFNTIDIVMVDSNSSFPDAVYLL 89


>gi|331090538|ref|ZP_08339391.1| ATP-dependent protease La [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405881|gb|EGG85409.1| ATP-dependent protease La [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 773

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 97/286 (33%), Gaps = 42/286 (14%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               R     A +K + E    + +L ++  E  +    D      +     I  +  + 
Sbjct: 26  FDVSREKSLEAVQKAMAEEQ-QIFLLTQKCIETENVTQDDLYEMGVVASVKQIVKMPKKI 84

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR       R +L +L Q      +      +      +                K    
Sbjct: 85  LRVLVEGEQRAKLNELVQTEPYLEAEITVLEEYPFVEEEP--------------VKQEAM 130

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               +   L   +  P + +E  +++A I     EL++L   +         F  E+  +
Sbjct: 131 IRTLQELFLQYAVKTPKLTKETVEQIAGID----ELKRLVDEI----SANVPFRYEDTQK 182

Query: 540 RLCERG----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            L E      +  L+++L+ +++ + +          ++++  +  +  +++  LL  + 
Sbjct: 183 LLEETDALKRYFLLVEKLENEIQVSKIK--------EELQEKVKARVDKHQKEYLLREEL 234

Query: 596 EEIEKQIAQVTAKGEAEKTAILISIL-------HEVHIQIHQIESQ 634
             I++++   +   +A++ A  +  L        ++  +I +  + 
Sbjct: 235 RVIQEELGDDSTISDADEFAKAVKELDAPEEVKEKLRKEIRRFRNT 280


>gi|218128831|ref|ZP_03457635.1| hypothetical protein BACEGG_00403 [Bacteroides eggerthii DSM
          20697]
 gi|217989059|gb|EEC55375.1| hypothetical protein BACEGG_00403 [Bacteroides eggerthii DSM
          20697]
          Length = 287

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I++    I + + +    Y    +R  +      W   PF  EK  SF  +  K  +Y F
Sbjct: 3  IQEAKN-IRLVDFLAGFGYEPVIQRGNSV-----WYKSPFRTEKEASFKVDLHKELWYDF 56

Query: 66 SCHVKGDHLSFLSAL 80
               GD ++    +
Sbjct: 57 GLGKGGDIITLAKEI 71


>gi|329769508|ref|ZP_08260918.1| replicative DNA helicase [Gemella sanguinis M325]
 gi|328838723|gb|EGF88321.1| replicative DNA helicase [Gemella sanguinis M325]
          Length = 453

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 10/158 (6%)

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
               L E +LL  L+  P  L E    +    + + + + +++ +      +       I
Sbjct: 6   DSVILAEQSLLGALMQEPEKLVEVKAAVDVEDFYDEKNKDIYNAILRLDEAEIIPDTTTI 65

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            + +   G     K +D  +    L+  T         +       L KR   + R+   
Sbjct: 66  FEEINNSG---AFKSMDASLYIVELYDITPST------RNIMHYANLVKR-YSIYREIRS 115

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                 +   +G A+  ++  ++  +V   + + ++ +
Sbjct: 116 ALLSSTEEMNQGNADIDSLTATLFDQVERAMERAKTSQ 153


>gi|17227397|ref|NP_478448.1| hypothetical protein all8023 [Nostoc sp. PCC 7120]
 gi|17134796|dbj|BAB77353.1| all8023 [Nostoc sp. PCC 7120]
          Length = 1010

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 104/352 (29%), Gaps = 23/352 (6%)

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
               L +    I    D  +        A  L    L         +       D+ I  
Sbjct: 56  DWINLKEALATIREIQDESNRAHALIALADKLPPDLLSEALTSAREIQDEYLCADALIAL 115

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             K   + L        ++  +    +      ++   +          I+D+  R    
Sbjct: 116 ARKLPPDLLSEALATAREIQDEYFRTSTLIELAEKLPSVLSEALAAAREIQDEYFRASTL 175

Query: 426 QAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            A+ ++L   L +           Y++ +A     +     L+  +L   +  +   LR 
Sbjct: 176 IALAEKLPSVLSEALAAAREIQDEYFRADALRELAQKLPPDLLSEALAAVREIQPEYLRA 235

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE- 543
            AL+  +   P++L E    + +I   +  L      L     +    L  E+     E 
Sbjct: 236 DALIALVEKLPSVLSEALAAIREI--QDEYLHA--DALRELVQKLPPDLLGEVLAAATEI 291

Query: 544 -------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK- 595
                      EL ++L   +    L +A  E      R    + LA      LLS    
Sbjct: 292 RGGYPHTNPLRELAEKLPPDLLSEALAAAR-EIQDESNRAHALRELAEKLPPDLLSEALT 350

Query: 596 --EEIEKQ------IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              EI+ +      +  +  K   +  +  ++   E+  + ++  +   + E
Sbjct: 351 ATREIQSEYHRASTLRALAQKLPPDLLSEALAAAREIQDESNRASTLRELAE 402



 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 74/238 (31%), Gaps = 23/238 (9%)

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
            +L          I+D+  R    + + ++L  +  + +           +         
Sbjct: 374 PDLLSEALAAAREIQDESNRASTLRELAEKLPSVLPEALAAVRKIRHKSNRAYGLIALAE 433

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINH--PAILQEQYQELADIRYDNNELQKLW 519
               ++  +L      +    R A+ L  L     P +L E    +++I+  +N    L 
Sbjct: 434 KLPSVLPEALAAATEIEPEYHR-ASTLRELAEKLPPDLLSEALTAISEIQPKSNRADALI 492

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
           +              E++   L        ++++  +   A    A  E    D+     
Sbjct: 493 AL------------AEKLPPDLLSEALAA-IREIQDESNRAHALIALAEKLPPDLLSEAL 539

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            A+   +     +     + +++         +  +  ++   E+  + +++ +  A+
Sbjct: 540 AAIREIQDESNRAHALIALAQKLP-------PDLLSEALAATREIQSKSNRVHALIAL 590



 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 76/233 (32%), Gaps = 20/233 (8%)

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
                   I+D+  R    + + ++L       ++E     R  +  +          + 
Sbjct: 600 EALAAATEIQDESNRASTLRELAEKL---PPDLLSEALAAIREIQPKSNRVHALIALAQK 656

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
           + S L +   + +    E        +    L+E  ++L      +  L  +       +
Sbjct: 657 LPSVLPEALAAIREIHHEY-------HRDNALRELAEKLPP-NLLSEALAVIREI---HY 705

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
              +      + ++L      E L  + +    +    A  E     +     +ALA  +
Sbjct: 706 ESNRTNALIALAKKLPS-VLPEALAAVRKIRDKSNRIYALRELA-DKLPSVLPEALATAR 763

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                   + +  K++A+       +  +  ++ + E+H + ++ ++  A+ E
Sbjct: 764 EIHD-ESYRADALKELAEKLP---PDLLSEALTAIREIHDESYRADALIALAE 812


>gi|319644097|ref|ZP_07998646.1| hypothetical protein HMPREF9011_04249 [Bacteroides sp. 3_1_40A]
 gi|317384339|gb|EFV65308.1| hypothetical protein HMPREF9011_04249 [Bacteroides sp. 3_1_40A]
          Length = 295

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 66/222 (29%), Gaps = 20/222 (9%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I +    + I + +           +     YW   P  +E+TPSF  ND    +Y F 
Sbjct: 2   TIAEAKQ-VRIVDFLA---QLGHHAQHIKSEQYWYFSPLRNERTPSFKVNDRINEWYDFG 57

Query: 67  CHVKGDHLSF---LSALLGCSFIES---VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
               GD +     +      S  E+   ++RL    G  LP           ++ ++  +
Sbjct: 58  EATGGDLVELTKNICRTDSVS--EALAYIERLVN--GASLPRTRMPTAPPRPVEAEMKDV 113

Query: 121 ------IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
                       +    L +A   R++       +          G           + +
Sbjct: 114 IVIPLRHHALFSYLQSRLIDADIGRMYCKEVHYELRGRHYFALAFGNISGGYEVRNAYYK 173

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQ 216
               +++  +   L  +   +   ++ F + L +      G 
Sbjct: 174 GCLNNKDISLIRHLTEETQENVCVFEGFMDFLSYMTLKLAGD 215


>gi|301311609|ref|ZP_07217536.1| DNA primase [Bacteroides sp. 20_3]
 gi|300830695|gb|EFK61338.1| DNA primase [Bacteroides sp. 20_3]
          Length = 287

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I++    I + + +    Y    +R  +      W   PF  EK  SF  +  K  +Y F
Sbjct: 3  IQEAKN-IRLVDFLAGFGYEPVIQRGNSV-----WYKSPFRTEKEASFKVDLHKELWYDF 56

Query: 66 SCHVKGDHLSFLSAL 80
               GD ++    +
Sbjct: 57 GLGKGGDIITLAKEI 71


>gi|169823787|ref|YP_001691398.1| replicative DNA helicase [Finegoldia magna ATCC 29328]
 gi|302379848|ref|ZP_07268331.1| replicative DNA helicase [Finegoldia magna ACS-171-V-Col3]
 gi|303235375|ref|ZP_07321992.1| replicative DNA helicase [Finegoldia magna BVS033A4]
 gi|167830592|dbj|BAG07508.1| replicative DNA helicase [Finegoldia magna ATCC 29328]
 gi|302312326|gb|EFK94324.1| replicative DNA helicase [Finegoldia magna ACS-171-V-Col3]
 gi|302493496|gb|EFL53285.1| replicative DNA helicase [Finegoldia magna BVS033A4]
          Length = 445

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 57/160 (35%), Gaps = 11/160 (6%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E +++  +I     + +  + +  + + + + Q+++  +     E+K      +  +L 
Sbjct: 14  AERSIIGAMIIDERAVDDAAEIVEPVDFYSTKYQEIYKAILQVIDEKKPVDYITLEDQLK 73

Query: 543 ERGFGELLKQLDRQVRDAGL-----------WSATTEANIVDVRQGYQQALALYKRFRLL 591
                E++  +D  +  +                 ++A I ++ +  Q  + +      +
Sbjct: 74  SNNMYEIIGGIDELISISEAVGSAVNVKYYSEIVKSKAIIRNLMRVSQDVIDMSIANNSV 133

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
               E  E  I +++     +    +  +L     +I ++
Sbjct: 134 GEVLEYAESNIFKISQNRNHQDLVKIQEMLEPTLARIGEM 173


>gi|282855816|ref|ZP_06265118.1| replicative DNA helicase [Pyramidobacter piscolens W5455]
 gi|282586330|gb|EFB91596.1| replicative DNA helicase [Pyramidobacter piscolens W5455]
          Length = 448

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 52/161 (32%), Gaps = 14/161 (8%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L       E A+L   +     L +  + L+   + +   + +++ +       +    
Sbjct: 8   RLPPSNLDAERAVLGACLLDREALVDVTEFLSPDDFYDLNYRDVFNVIMDMVKSSRPVDM 67

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF------ 588
             +   L  RG   LL++L  Q   A +  +   A          +  A+++R       
Sbjct: 68  LTLSAELQNRG---LLEKLGGQAFLAAVIDSVPTAANAAYHARIVRDKAIHRRLISAGNA 124

Query: 589 -----RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
                   S+   E+ +   +   +   ++       L +V
Sbjct: 125 IVRMGYDESKDLSELLEDAERFVFEVSRQRNEANFKSLRDV 165


>gi|167627913|ref|YP_001678413.1| replicative DNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597914|gb|ABZ87912.1| replicative DNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 464

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 7/156 (4%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L  ++ +   ++     L    + +   + ++  +         F    + + L 
Sbjct: 18  AEKAILGNILLNNDNIELVEDFLLIDDFFDKRHKIIYKQITVLNQSNTPFDVLILSEYLA 77

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
             G       L     ++ +    T    V   + Y   +    + R L     +I ++I
Sbjct: 78  TEGL------LSEAGGESYIIDLATNTPAVSNIKTYANIVKDKAKLRSLQASVNDIVQKI 131

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637
               +K   E      S + +V  +   + +  E++
Sbjct: 132 YSSDSKNPDEVIDYAESRILDVAKERETLVKGPESI 167


>gi|212691123|ref|ZP_03299251.1| hypothetical protein BACDOR_00613 [Bacteroides dorei DSM 17855]
 gi|212666355|gb|EEB26927.1| hypothetical protein BACDOR_00613 [Bacteroides dorei DSM 17855]
          Length = 321

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 58/201 (28%), Gaps = 18/201 (8%)

Query: 8   IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           I+D    I I++ +    Y    R+         W   P  +E   SF  N  +  +Y +
Sbjct: 3   IEDAK-KISIADYLHSLGYSPVKRQGNGL-----WYKSPLREEHEASFKVNTDRNLWYDY 56

Query: 66  SCHVKGDHLSFLSAL---LGCSFIESVQRLAAIA-GVPLPVVDPKIEKKEKIQTDLIRLI 121
                G+ ++    L       ++  + R+A     V          + E     L  + 
Sbjct: 57  GAGKGGNIITLAKELYCSDHVPYL--LDRIAEQTPHVRPVSFSFPQRRTEPSFQHL-EIH 113

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
           ++A       L   + + ++  L +R             Y      ++      +    +
Sbjct: 114 DLAH---PALLHYLQGRGINIELAKRECKELHFTHNGKPYFAIGFPNMAGGYEVRNSFFK 170

Query: 182 KIIEAGLLIDGDNSATSYDRF 202
             I    +          ++ 
Sbjct: 171 GCIAPKDITHIRQQGEPREKC 191


>gi|254876999|ref|ZP_05249709.1| replicative DNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843020|gb|EET21434.1| replicative DNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 464

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 7/156 (4%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L  ++ +   ++     L    + +   + ++  +         F    + + L 
Sbjct: 18  AEKAILGNILLNNDNIELVEDFLLIDDFFDKRHKIIYKQITVLNQSNTPFDVLILSEYLA 77

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
             G       L     ++ +    T    V   + Y   +    + R L     +I ++I
Sbjct: 78  TEGL------LSEAGGESYIIDLATNTPAVSNIKTYANIVKDKAKLRSLQASVNDIVQKI 131

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637
               +K   E      S + +V  +   + +  E++
Sbjct: 132 YSSDSKNPDEVIDYAESRILDVAKERETLVKGPESI 167


>gi|125973671|ref|YP_001037581.1| zinc finger, CHC2-type [Clostridium thermocellum ATCC 27405]
 gi|125713896|gb|ABN52388.1| zinc finger, CHC2-type [Clostridium thermocellum ATCC 27405]
          Length = 687

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 16  PISNLIGQYV---DWD----RRKTNAVKGDYWACCPFHDE-KTP-SFHCNDSKGFYYCFS 66
            I  LI Q +           +     KG +   CPFH     P S   ND+K  ++C +
Sbjct: 27  DIEPLIQQSLTAAKLKDFYGLKGK-YSKGRFV--CPFHHGADNPTSLSMNDNKRCFHCNA 83

Query: 67  CHVKGDHLSFLSALLGCS 84
           C   G +L F+  +   S
Sbjct: 84  CGKSGTYLEFIMYMQNIS 101


>gi|323697618|ref|ZP_08109530.1| DnaB domain protein helicase domain protein [Desulfovibrio sp.
           ND132]
 gi|323457550|gb|EGB13415.1| DnaB domain protein helicase domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 453

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 65/189 (34%), Gaps = 17/189 (8%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            SL  GK+     L E A+L  ++ + AI  E    L    + + +   +++ + + +  
Sbjct: 6   ESLAHGKIPPFDLLAEHAVLEGVLRNNAIFHEIIDLLNRQSFYHPDHGAIFAAMTTCYDN 65

Query: 529 QKYFLPEEIHQRLCERG----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
            +      +   +          E L     +            A  V  +   +  + L
Sbjct: 66  NEPIDANTVQTAVEAENRNICLREYLHTCTPEGGSLSPRDIVKYAEQVRDKATLRSLIQL 125

Query: 585 YKR-----------FRLLSRQKEEIEKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIE 632
             +              L+  ++E+  ++ + T   +    + +++S+L  ++ +  Q  
Sbjct: 126 GNKIATMAYNSQAPLVTLNEAEKEL-FELKRKTKTFDKPAASEVIMSVLDTINSKFKQGN 184

Query: 633 SQEAMIEGF 641
           +   +  GF
Sbjct: 185 AGPGLKTGF 193


>gi|241668465|ref|ZP_04756043.1| replicative DNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 465

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 7/156 (4%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L  ++ +   ++     L    + +   + ++  +         F    + + L 
Sbjct: 19  AEKAILGNILLNNDNIELVEDFLLIDDFFDKRHKIIYKQITVLNQSNTPFDVLILSEYLA 78

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
             G       L     ++ +    T    V   + Y   +    + R L     +I ++I
Sbjct: 79  TEGL------LSEAGGESYIIDLATNTPAVSNIKTYANIVKDKAKLRSLQASVNDIVQKI 132

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637
               +K   E      S + +V  +   + +  E++
Sbjct: 133 YSSDSKNPDEVIDYAESRILDVAKERETLVKGPESI 168


>gi|258655460|ref|YP_003204616.1| replicative DNA helicase [Nakamurella multipartita DSM 44233]
 gi|258558685|gb|ACV81627.1| replicative DNA helicase [Nakamurella multipartita DSM 44233]
          Length = 832

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 50/180 (27%), Gaps = 19/180 (10%)

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
            +               +   +    E ++L  ++     + +  + L    +       
Sbjct: 6   QRWSEGPVRTPPPPGFDRQPPQDQAAEQSVLGGMLMSKDAVADVLEALTSADFYRPAHAL 65

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           ++  +   +   +      +   L + G    L ++   V    L +    A        
Sbjct: 66  IFDAILDLYSRGEPADTVTVAAELDKSGS---LGRIGGAVYLHTLMATVPTAA---NAAF 119

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQV---------TAKGEAEKTAILISILHEVHIQI 628
           Y Q +A     + + R+  E   +I Q+               E      + L++V  + 
Sbjct: 120 YAQIVA----EKAILRRLVEAGTRIVQLGYGGNDGEMGGGEVDEIVDRAQAELYDVTERR 175


>gi|310826868|ref|YP_003959225.1| DNA primase [Eubacterium limosum KIST612]
 gi|308738602|gb|ADO36262.1| DNA primase [Eubacterium limosum KIST612]
          Length = 187

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 13/130 (10%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF-YY 63
           ++    +   + +  ++G Y         +    +   CP HD K  +F   D   F + 
Sbjct: 4   KEKADLIKATLTMREILGMY------GLGSNARHHRIPCPIHDGKDRNFSFTD---FGFR 54

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPV-VDPKIEKKEKIQTDLIRL 120
           CF C  +G  + F+    G SF  +++ +     +    P     +  + +  +    R 
Sbjct: 55  CFVCGAEGGLVHFVELYRGLSFEAALEEINGRFRLWEDYPELESVESSRNQHKKDSAFRS 114

Query: 121 IEVATDFFHH 130
                   H 
Sbjct: 115 RRAIAKLRHE 124


>gi|319941484|ref|ZP_08015812.1| replicative DNA helicase [Sutterella wadsworthensis 3_1_45B]
 gi|319805104|gb|EFW01934.1| replicative DNA helicase [Sutterella wadsworthensis 3_1_45B]
          Length = 465

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/199 (11%), Positives = 65/199 (32%), Gaps = 15/199 (7%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           ++  +  +    +      L E A+L  L+   + L      +    +   + + ++  +
Sbjct: 2   AEENIDEAAQAVRRPPSSVLSEQAILAGLMIDNSALDSVVDIIRPEDFYRRDHRIIFEEI 61

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFG----------ELLKQLDRQVRDAGLWSATTEANIV 572
                E        + + L  +G            EL+                 + +++
Sbjct: 62  VQLLQEGHPADYLTVFESLKSKGIENDAGGLPYLTELVGSSPSAANIRRYAEIVHDKSVL 121

Query: 573 DVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQ 627
                    +   AL    R      +E EK++  +  +    +     L++++ +V  +
Sbjct: 122 RQLITVGDRIVTNALAPEGRETREILDEAEKEVLAINERNARTQRGFQPLVTLVRDVSAR 181

Query: 628 IHQIESQEAMIEGFGKMSG 646
           + ++ + ++  E  G  SG
Sbjct: 182 VIELYNTKSTSEVTGVSSG 200


>gi|296167062|ref|ZP_06849474.1| replicative DNA helicase DnaB [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295897619|gb|EFG77213.1| replicative DNA helicase DnaB [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 458

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 53/173 (30%), Gaps = 15/173 (8%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P       S   G+   +    E A+L  ++     + +  + L    +     Q ++ 
Sbjct: 8   APGMDSPAPSEDFGRQPPQDLAAEQAVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +   +   +      +   L  RG   +L+++        L S    A       GY  
Sbjct: 68  AILDLYGRGEPADAVTVAAELDRRG---MLRRIGGAPYLHTLISTVPTA----ANAGYYA 120

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628
            +      + L R+  E   ++ Q           AE      + ++EV  + 
Sbjct: 121 TIVA---EKALLRRLVEAGTRVVQYGYAGAEGADVAEIVDRAQAEIYEVADRR 170


>gi|284049288|ref|YP_003399627.1| ATP-dependent chaperone ClpB [Acidaminococcus fermentans DSM 20731]
 gi|283953509|gb|ADB48312.1| ATP-dependent chaperone ClpB [Acidaminococcus fermentans DSM 20731]
          Length = 847

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 73/202 (36%), Gaps = 2/202 (0%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + S   R ++           +  +++    + ++     ++++AL+       
Sbjct: 311 YRKYIEKDSALERRFQPVLVKEPSVEDTISILRGLKERYEVHHGVRIKDSALVAAATLSN 370

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-GELLKQLD 554
             + +++     I   +    +L   + S   E        +  ++ E+    E      
Sbjct: 371 RYINDRFLPDKAIDLVDEAAARLRVEIDSMPTELDESRRRMLQLQIEEQALSKEEDDASK 430

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            ++       A  ++    +   ++       + R + +  + ++K++ +     +  + 
Sbjct: 431 ARLEKIKEELAKLKSENDKLMDQWKAEKGGIAKIRQVKKDMDNVKKEMEEAERSYDLNRL 490

Query: 615 AIL-ISILHEVHIQIHQIESQE 635
           A L    L E+  Q+  +E +E
Sbjct: 491 AELKYGKLPELQKQLAALEKEE 512


>gi|255103008|ref|ZP_05331985.1| putative deoxyribonuclease [Clostridium difficile QCD-63q42]
          Length = 249

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 66/251 (26%), Gaps = 17/251 (6%)

Query: 1   MNYP-RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M    +  I  +     I  L            +  +      CP H  K  +F  + +K
Sbjct: 1   MKIDIKQLIDIIKN-ANIDEL-----YLRDIGVDTTQKRNV-PCPIHGGKDKNFQFDLNK 53

Query: 60  GFYYCFS--CHVKGDHLSFLSALLGCSFI-ESVQRLAAIAGVPLPVVDPKIEKKEKIQ-- 114
             Y C+S  C V  D +             E++  LA    + LP+   K   K+     
Sbjct: 54  RIYTCYSHNCVVGADIIELCRTYERFERPIEAILFLANKYNISLPINKSKTNIKKTNNTI 113

Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
            ++    +    F     + A          E    +   +            S+ E   
Sbjct: 114 KNIYIKKKDINSFIEEKKQEAFKNNDIELAFEFECMTDKDKRKYYLDNNIKIKSMLEKQN 173

Query: 175 QKGFSEEKIIEAGLLI----DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
              +  + II     I     G   +  +      ++    +  G+  +           
Sbjct: 174 YSSYKADSIINIDKYISENLKGIRESIKHATEGKNVLMVAPTGSGKTYSIINTLKELDIK 233

Query: 231 VKYLNSPETIL 241
             ++      +
Sbjct: 234 ALFIFPNSANV 244


>gi|329896994|ref|ZP_08271787.1| Replicative DNA helicase [gamma proteobacterium IMCC3088]
 gi|328921502|gb|EGG28887.1| Replicative DNA helicase [gamma proteobacterium IMCC3088]
          Length = 474

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 53/164 (32%), Gaps = 10/164 (6%)

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
               L + K++      E ++L  L+          + +    +  ++ + ++  +    
Sbjct: 23  PDRELSRIKMAPHSIEAERSVLGGLLIANDAWDSVAEAVTAADFYRHDHRLIFRQIAKLA 82

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
            E        +  RL   G      +LD     A +     +       + Y + +    
Sbjct: 83  NESDPIDVITLSDRLAAAG------ELDSVGGLAYITELAADTPSASNIRAYAKVV---- 132

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           R R L R+  E  + IA+     E   +  LI       +QI +
Sbjct: 133 RERSLLRRLIETAQDIAEAGFNPEGRSSEELIDEAEHKIMQISE 176


>gi|327314484|ref|YP_004329921.1| hypothetical protein HMPREF9137_2272 [Prevotella denticola F0289]
 gi|326944562|gb|AEA20447.1| conserved hypothetical protein [Prevotella denticola F0289]
          Length = 316

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 6/93 (6%)

Query: 5  RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
           + +  +     I   + +  +   RR        Y    P  +E  PSF  +  K  + 
Sbjct: 3  EEDLSLIK-RYSIMEYLERKGIRLVRR--TPAYAMYR--SPLREETRPSFKVDTEKNLWI 57

Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
           ++    G  +     L  C+  E++ RL   A
Sbjct: 58 DYAEGRGGSIIDLYMRLEDCTLSEAICRLGQNA 90


>gi|328883735|emb|CCA56974.1| Replicative DNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 494

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 63/188 (33%), Gaps = 26/188 (13%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++  +    E ++L  ++     + +  + +    +     + +++ +   + + +   P
Sbjct: 57  RVPPQDLDAEQSVLGGMLLSKDAIADVVEIIKGHDFYKPAHETVYAAILDLYAKGEPADP 116

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L +RG      ++ R    + L +             Y + +      R + R+
Sbjct: 117 ITVGAELTKRG------EITRVGGASYLHTLVQSVPTAANASYYAEIVH----ERAVLRR 166

Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638
             E   +I Q+    +    E      + ++ V  Q                ++  EA+ 
Sbjct: 167 LVEAGTKITQMGYAADGDVDEIVNSAQAEIYAVTEQRTTEDYLPLGDIMEGALDEIEAIG 226

Query: 639 EGFGKMSG 646
              G+M+G
Sbjct: 227 SRSGEMTG 234


>gi|257067517|ref|YP_003153772.1| primary replicative DNA helicase [Brachybacterium faecium DSM 4810]
 gi|256558335|gb|ACU84182.1| primary replicative DNA helicase [Brachybacterium faecium DSM 4810]
          Length = 480

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 51/182 (28%), Gaps = 12/182 (6%)

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS--LREAALLLTLINHPAILQEQ 501
               R   +          S    ++   +G     P     E  +L  ++     + + 
Sbjct: 6   RRPDREHSRRRSSYTGPVTSTEAFEAGPDRGLERTPPQDLAAERGVLGGMMLSKDAIADV 65

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
            + +    +     + ++  +   +   +      +   L +RG    L ++      A 
Sbjct: 66  VETVRGHDFYRPAHEMIYEAIIDLYGRGEPADLVTVSDELSKRG---ELARVGGGAYLAD 122

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
           L      A        Y + +    +     R+  E   +I Q+    +  +   +I+  
Sbjct: 123 LIDMVPTAA---NAGYYAEIVVERAQL----RRLVEAGTRIVQLGYAADGGEVDEVINEA 175

Query: 622 HE 623
             
Sbjct: 176 QA 177


>gi|253744718|gb|EET00875.1| Protein 21.1 [Giardia intestinalis ATCC 50581]
          Length = 681

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 71/205 (34%), Gaps = 25/205 (12%)

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
           +N R +  K   + L   +++    +   +L+E      L +   IL+E  + L+D+   
Sbjct: 248 RNLRKQYNKVVRENLEMRNVMDELSTTLENLKENN--AQLTSDRDILKETNKHLSDMD-- 303

Query: 512 NNELQKLWSFLFSDFVEQKYFL-PEEIHQ------RLCERGFGELLKQLDRQVRDAGLWS 564
               ++L   + +   E        E+        +  E     +   LD+ + ++ + S
Sbjct: 304 ----RRLKQ-VINHTGEGDVVDCVNELVNTMREQVKAREEDLRNVSNALDQVISESRVMS 358

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA---------EKTA 615
           +       D  +       L ++     R+  E+E ++     + E          E   
Sbjct: 359 SEASDLKKDRARLLSDVKDLRQKLYDKERELRELEIKLETSNREAEQLVYERQEVEETLT 418

Query: 616 ILISILHEVHIQIHQIESQEAMIEG 640
            L + L      +  I+   A IEG
Sbjct: 419 RLTNELQSAKTLLQTIKQGAASIEG 443


>gi|220908358|ref|YP_002483669.1| ATP-dependent chaperone ClpB [Cyanothece sp. PCC 7425]
 gi|219864969|gb|ACL45308.1| ATP-dependent chaperone ClpB [Cyanothece sp. PCC 7425]
          Length = 872

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 71/204 (34%), Gaps = 4/204 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R +++    +     +  +++    + ++     + + AL+       
Sbjct: 321 YRKYIEKDAALERRFQQVYIDQPSVEDTISILRGLKERYEVHHGVKISDNALVAAASLSS 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      + +   +      +       
Sbjct: 381 RYISDRFLPDKAIDLVDEAAAKLKMEITSKPEELDEIDRKILQLEMERLSLEKE-SSAAS 439

Query: 556 QVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           + R   L     +       +   +Q    +  + + +  + E++  QI Q     +  K
Sbjct: 440 RERLERLEKELADLKQEQTSLNAQWQGEKQIIDQLQAIKEEIEQLNVQIQQAERDFDYNK 499

Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636
            A L    L ++  ++ + E+Q A
Sbjct: 500 AAKLKFGQLTDLQRRLEETETQLA 523


>gi|39938873|ref|NP_950639.1| hypothetical protein PAM_387 [Onion yellows phytoplasma OY-M]
 gi|39721982|dbj|BAD04472.1| hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 292

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 81/256 (31%), Gaps = 48/256 (18%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQR--------- 91
            CP H  K P+     S    +C+ C    D +     +    SF E++QR         
Sbjct: 37  PCPIHQGKNPTCCHFTSNNKIHCWKCGKDYDLIDVYMVIRQIKSFSEAIQRIEGFMNSFE 96

Query: 92  ------------------LAAIAGVPLPVVDPKIEKKEKIQTDLIR----LIEVATDFFH 129
                             L  +     P      ++    +  L +    L     D++H
Sbjct: 97  FKTLSQQEKETTKITINPLKQLYHSMKPKQPVDEQEINIKKKQLFQKISPLFNQIRDYYH 156

Query: 130 HSLKNARDKRLH----YYLDERGIDSHAIEMFKLGYAPDSRYSLRE----HLRQKGFSEE 181
           + L   R+        Y   +R +    I+ FKLGYAP S  SL      + +++     
Sbjct: 157 YLLTTNRNNESQPGLTYLTKKRKLTLETIKEFKLGYAPLSDKSLSFRLVNYCKKQNIDTT 216

Query: 182 KIIEAGL---LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKY 233
           K++E G     I        +D F   +I P+ +   +   F           + +    
Sbjct: 217 KLVEYGFIKEKISQQGKKYFHDTFHGSIIIPVENGYNKTFHFYQNHFREVSYFQPKYQAL 276

Query: 234 LNSPETILFHKGKNLY 249
            N  +T   H     +
Sbjct: 277 TNFSQTPTLHFSYRFF 292


>gi|78185726|ref|YP_378160.1| ATPase [Synechococcus sp. CC9902]
 gi|78170020|gb|ABB27117.1| ATPase [Synechococcus sp. CC9902]
          Length = 941

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 8/128 (6%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    +L   + S     K  + EE    L       L  +   +     L    
Sbjct: 466 AIDLIDEAAAQLKMEVTS-----KPQVVEEAEADLRRVELAVLAAEQAPEAERIQLQRNR 520

Query: 567 TE--ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHE 623
            +  A + D+R+ +Q+          L RQ EE+   IA+    G+ E+ A L    LH 
Sbjct: 521 LDGAARLDDLRRRWQEERNQLDELGQLLRQDEELRHAIAEAERDGDLEEAARLQYDQLHT 580

Query: 624 VHIQIHQI 631
           +  +  ++
Sbjct: 581 LQQRREEL 588


>gi|268611940|ref|ZP_06145667.1| hypothetical protein RflaF_20836 [Ruminococcus flavefaciens FD-1]
          Length = 3221

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 23/100 (23%)

Query: 1  MNYPRDFIKDLLIHIPISNL----IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN 56
          M        +        NL    +    D  +     V  D       HD    S H N
Sbjct: 1  MRIT----DEQKERAAFVNLPQFLMAHGFDLKKVGREYVWKD-------HD----SLHIN 45

Query: 57 D----SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          D     +G ++ FS    GD++ FL   +G SF+++V+ L
Sbjct: 46 DNGPGERGAWFRFSEDKGGDNIGFLREYMGMSFVDAVEAL 85


>gi|17978023|emb|CAC85955.1| nonmuscle heavy chain myosin II-A [Mus musculus]
          Length = 1960

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 103/287 (35%), Gaps = 22/287 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                   +   EKL ++     +     E E        ++ ELE    +    +++++ 
Sbjct: 870  EMETMQSQLMAEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEE 929

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R  Y QA + ++QQ  Q+   +        +K    +       + ++   +  +     
Sbjct: 930  RCQYLQAEKKKMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCK 989

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFVE------QKY 531
              +E  LL         + E    L +    +  L KL      + +D  E      ++ 
Sbjct: 990  LAKEKKLLE------DRVAEFTTNLMEEEEKSKSLAKLKNKHEAMITDLEERLRREEKQR 1043

Query: 532  FLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
               E+  ++L        + + +L  Q+ +  +  A  E    +++    +      +  
Sbjct: 1044 QELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKE---EELQAALARVEEEAAQKN 1100

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
            +  ++  E+E QI+++    E+E+ +   +     ++  ++  ++++
Sbjct: 1101 MALKKIRELETQISELQEDLESERASRNKAEKQKRDLGEELEALKTE 1147



 Score = 37.6 bits (85), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 69/227 (30%), Gaps = 15/227 (6%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            + ++ +    + +R+   +L  +            K     +D +       ++     K
Sbjct: 1579 QSEEKKKQLVRQVREMEAELEDERKQRSMAMAARKKLEMDLKDLEAHIDTANKNREEAIK 1638

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +K   +    +  L         + + LA  + +  +L+ + + +     E       
Sbjct: 1639 QLRKLQAQMKDCMREL---DDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERA 1695

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +   +   EL  ++        L           +    ++         L++ + 
Sbjct: 1696 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIALLEEELEEEQGNTELINDRL 1752

Query: 596  EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIES 633
            ++   QI Q+      E++           L     E+  ++ ++ES
Sbjct: 1753 KKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKAKLQEMES 1799


>gi|333025751|ref|ZP_08453815.1| putative replicative DNA helicase [Streptomyces sp. Tu6071]
 gi|332745603|gb|EGJ76044.1| putative replicative DNA helicase [Streptomyces sp. Tu6071]
          Length = 508

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/193 (11%), Positives = 61/193 (31%), Gaps = 26/193 (13%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                ++  +    E ++L  ++     + +  + L    +     + ++  +   + + 
Sbjct: 66  PAAFERVPPQDLDAEQSVLGGMLLSKDAIADVVEILKGSDFYRPAHEVVYQAILDLYAKG 125

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +   P  +   L  RG      ++ +      L +           + Y + +      R
Sbjct: 126 EPADPITVAAELTRRG------EITKVGGAPYLHTLVQTVPTAANAEYYAEIVH----ER 175

Query: 590 LLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIES 633
            + R+  E   +I Q+    +    E      + + +V  Q                ++ 
Sbjct: 176 AVLRRLVEAGTRITQMGYAADGDVDEIVNNAQAEVFKVTEQRTSEDYLPLGDIMEGALDE 235

Query: 634 QEAMIEGFGKMSG 646
            EA+    G+M+G
Sbjct: 236 IEAIGSRSGEMTG 248


>gi|253571048|ref|ZP_04848456.1| DNA primase [Bacteroides sp. 1_1_6]
 gi|251839997|gb|EES68080.1| DNA primase [Bacteroides sp. 1_1_6]
 gi|313157107|gb|EFR56537.1| mobilizable transposon, excision family protein [Alistipes sp.
           HGB5]
          Length = 295

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            I +    + I + +           +     YW   P  +E+TPSF  ND    +Y F 
Sbjct: 2   TIAEAKQ-VRIVDFLA---QLGHHAQHIKSEQYWYFSPLRNERTPSFKVNDRINEWYDFG 57

Query: 67  CHVKGDHL---SFLSALLGCSFIES---VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
               GD +    ++      S  E+   ++RL    G  LP           ++ ++  +
Sbjct: 58  EATGGDLVELAKYICRTDCVS--EALAYIERLVN--GASLPRTRMPTAPPRPVEAEMKDV 113

Query: 121 ------IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174
                       +    L +A   R++       +          G           + +
Sbjct: 114 IVIPLRHHALFSYLQSRLIDADIGRMYCKEVHYELRGRHYFALAFGNTSGGYEVRNAYYK 173

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQ 216
               +++  +   L  +   +   ++ F + L +      G 
Sbjct: 174 GCLNNKDISLIRHLTEETQENVCVFEGFMDFLSYMTLKLAGD 215


>gi|319957754|ref|YP_004169017.1| primary replicative DNA helicase [Nitratifractor salsuginis DSM
           16511]
 gi|319420158|gb|ADV47268.1| primary replicative DNA helicase [Nitratifractor salsuginis DSM
           16511]
          Length = 478

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 22/161 (13%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A+L  +I  P I +E    L    +     Q L+  +    + +K    E + + L  
Sbjct: 10  ERAVLSAIIFDPEIFEEIAARLKPEDFYLPFHQHLFRAMEQLSLAEKPIDEEFLRKELER 69

Query: 544 RGF------------------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            G                      ++++        L +  TE   + V +  +    + 
Sbjct: 70  VGKFDEAEMVEVLSANPITDTKAYVEEIKALATKRSLVTLATEIKKLTVEENLEATEVMD 129

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           +    + ++  EI ++      +   E T  ++  +  +  
Sbjct: 130 R----VEQKLYEITQESVSEDFRPSDEITLSMMQEIERLKA 166


>gi|168004061|ref|XP_001754730.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693834|gb|EDQ80184.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 806

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/268 (10%), Positives = 89/268 (33%), Gaps = 23/268 (8%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
                   +  +        +      ++D K R   +  +  RL++ ++K   +     
Sbjct: 390 YHVRGELDDERERVKAKAEAVAKMARALEDTKSRAAEAHDLEKRLEEEYKKSEGKTEDQR 449

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA-------ILQE 500
           R  ++    R +   +  L +    + K+S++       +   L +  +       + + 
Sbjct: 450 RLREELESVRSRANEADSLSERLEREIKISEERQETVQKITRELEDARSKASDAHSLSKR 509

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE---------LLK 551
             +E+        + ++L   L     +        + + L +              L++
Sbjct: 510 LEEEIKKSEGKTEDQRRLRKELEDARRKADEADS--LSKALEDEQNKNEAIRDSERKLIE 567

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK---RFRLLSRQKEEIEKQIAQVTAK 608
            L++    A      +     + R+  ++   L K   R   L+++ + + K+  +   +
Sbjct: 568 DLEKMKDKARDADNLSRKLSEEERKVSEKDSNLTKQSERLSELNKKLKNLRKERDEARKE 627

Query: 609 GEA--EKTAILISILHEVHIQIHQIESQ 634
                ++     S + E+  +I ++E +
Sbjct: 628 ARKQNDRAESNESRIKELESRIKELEEE 655


>gi|114326446|ref|NP_071855.2| myosin-9 isoform 1 [Mus musculus]
 gi|205371802|sp|Q8VDD5|MYH9_MOUSE RecName: Full=Myosin-9; AltName: Full=Cellular myosin heavy chain,
            type A; AltName: Full=Myosin heavy chain 9; AltName:
            Full=Myosin heavy chain, non-muscle IIa; AltName:
            Full=Non-muscle myosin heavy chain A; Short=NMMHC-A;
            AltName: Full=Non-muscle myosin heavy chain IIa;
            Short=NMMHC II-a; Short=NMMHC-IIA
 gi|74180962|dbj|BAE27761.1| unnamed protein product [Mus musculus]
 gi|74180967|dbj|BAE27763.1| unnamed protein product [Mus musculus]
 gi|74180971|dbj|BAE27765.1| unnamed protein product [Mus musculus]
 gi|74180973|dbj|BAE27766.1| unnamed protein product [Mus musculus]
 gi|74180975|dbj|BAE27767.1| unnamed protein product [Mus musculus]
 gi|74180985|dbj|BAE27772.1| unnamed protein product [Mus musculus]
 gi|74180987|dbj|BAE27773.1| unnamed protein product [Mus musculus]
 gi|74180995|dbj|BAE27776.1| unnamed protein product [Mus musculus]
 gi|74180997|dbj|BAE27777.1| unnamed protein product [Mus musculus]
 gi|74180999|dbj|BAE27778.1| unnamed protein product [Mus musculus]
 gi|74181014|dbj|BAE27783.1| unnamed protein product [Mus musculus]
 gi|74181018|dbj|BAE27785.1| unnamed protein product [Mus musculus]
 gi|74181123|dbj|BAE27829.1| unnamed protein product [Mus musculus]
 gi|74184545|dbj|BAE27894.1| unnamed protein product [Mus musculus]
 gi|74184580|dbj|BAE27906.1| unnamed protein product [Mus musculus]
 gi|123233477|emb|CAM23428.1| myosin, heavy polypeptide 9, non-muscle [Mus musculus]
 gi|148697703|gb|EDL29650.1| myosin, heavy polypeptide 9, non-muscle [Mus musculus]
          Length = 1960

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 103/287 (35%), Gaps = 22/287 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                   +   EKL ++     +     E E        ++ ELE    +    +++++ 
Sbjct: 870  EMETMQSQLMAEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEE 929

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R  Y QA + ++QQ  Q+   +        +K    +       + ++   +  +     
Sbjct: 930  RCQYLQAEKKKMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCK 989

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFVE------QKY 531
              +E  LL         + E    L +    +  L KL      + +D  E      ++ 
Sbjct: 990  LAKEKKLLE------DRVAEFTTNLMEEEEKSKSLAKLKNKHEAMITDLEERLRREEKQR 1043

Query: 532  FLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
               E+  ++L        + + +L  Q+ +  +  A  E    +++    +      +  
Sbjct: 1044 QELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKE---EELQAALARVEEEAAQKN 1100

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
            +  ++  E+E QI+++    E+E+ +   +     ++  ++  ++++
Sbjct: 1101 MALKKIRELETQISELQEDLESERASRNKAEKQKRDLGEELEALKTE 1147



 Score = 37.9 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 70/227 (30%), Gaps = 15/227 (6%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            + ++ +    + +R+   +L  +            K     +D +       ++     K
Sbjct: 1579 QSEEKKKQLVRQVREMEAELEDERKQRSMAMAARKKLEMDLKDLEAHIDTANKNREEAIK 1638

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +K   +    +  L         + + LA  + +  +L+ + + +     E       
Sbjct: 1639 QLRKLQAQMKDCMREL---DDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERA 1695

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +   +   EL  ++        L           + Q  ++         L++ + 
Sbjct: 1696 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELINDRL 1752

Query: 596  EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIES 633
            ++   QI Q+      E++           L     E+  ++ ++ES
Sbjct: 1753 KKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKAKLQEMES 1799


>gi|326427620|gb|EGD73190.1| WD repeat-containing protein 65 [Salpingoeca sp. ATCC 50818]
          Length = 1196

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/290 (10%), Positives = 103/290 (35%), Gaps = 19/290 (6%)

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
                ED    ++       ++    +  +  +  ++  E +       +  +  + K  
Sbjct: 688 FTQEKEDLKRQLQSVKAEKEKEENRHNEEIASLNDRQLQEIQELEHQHNQKLMTEYEKYQ 747

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +   K Q+++  Y + + +R+    ++ + + + Y     +      +        Q   
Sbjct: 748 MLQKKSQEMQSDYEEQL-ERMASSKEQALKDLAEYWESKLREKTAMLEAANEAARDQQRE 806

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            +  + +     +  +L   +N+   L+E+ +   +++ +N  L K +  L  +  E+++
Sbjct: 807 HEEIVRQIELDADKEILAMRLNYEKALKEEKEHGLEVKGENGILLKKFKALQREIEEEQH 866

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              +       +    +L   +    R+        +     ++   ++   L K+ + L
Sbjct: 867 KRADM------QAEQKKLHAHIKALEREIVSGKKEIDERDETIQDKERRIYDLKKKNQEL 920

Query: 592 SR-------QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +       + +E++KQI     + + +    +   + E+ +++ +    
Sbjct: 921 EKFKFVLDYKIKELKKQI-----EPKDQDIRAMKQQISEMDVELERYHKT 965


>gi|189427032|ref|YP_001950131.1| DNA primase [Ralstonia phage RSL1]
 gi|189233344|dbj|BAG41701.1| DNA primase [Ralstonia phage RSL1]
          Length = 345

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 5/44 (11%)

Query: 32 TNAVKGDYWACCPFHDEKTPS-F-HCNDSK---GFYYCFSCHVK 70
                     CPFH E TPS F    D K   G +YCF+C   
Sbjct: 26 KKETGHRMMILCPFHSENTPSAFVTVGDGKYSPGSFYCFACEKG 69


>gi|318059001|ref|ZP_07977724.1| replicative DNA helicase [Streptomyces sp. SA3_actG]
 gi|318075527|ref|ZP_07982859.1| replicative DNA helicase [Streptomyces sp. SA3_actF]
          Length = 514

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/193 (11%), Positives = 61/193 (31%), Gaps = 26/193 (13%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                ++  +    E ++L  ++     + +  + L    +     + ++  +   + + 
Sbjct: 72  PAAFERVPPQDLDAEQSVLGGMLLSKDAIADVVEILKGSDFYRPAHEVVYQAILDLYAKG 131

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +   P  +   L  RG      ++ +      L +           + Y + +      R
Sbjct: 132 EPADPITVAAELTRRG------EITKVGGAPYLHTLVQTVPTAANAEYYAEIVH----ER 181

Query: 590 LLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIES 633
            + R+  E   +I Q+    +    E      + + +V  Q                ++ 
Sbjct: 182 AVLRRLVEAGTRITQMGYAADGDVDEIVNNAQAEVFKVTEQRTSEDYLPLGDIMEGALDE 241

Query: 634 QEAMIEGFGKMSG 646
            EA+    G+M+G
Sbjct: 242 IEAIGSRSGEMTG 254


>gi|85373630|ref|YP_457692.1| hypothetical protein ELI_04015 [Erythrobacter litoralis HTCC2594]
 gi|84786713|gb|ABC62895.1| hypothetical protein ELI_04015 [Erythrobacter litoralis HTCC2594]
          Length = 302

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 30 RKTNAVKGDYWACCPFHDEKTPSFHCNDSKG--FYYCF-SC 67
          R          ACCP HD++TPS   +  +    ++CF  C
Sbjct: 24 RGGKWSGTKGMACCPAHDDRTPSLGVSLGRQAILFHCFAGC 64


>gi|227834259|ref|YP_002835966.1| Replicative DNA helicase [Corynebacterium aurimucosum ATCC 700975]
 gi|262182992|ref|ZP_06042413.1| replicative DNA helicase [Corynebacterium aurimucosum ATCC 700975]
 gi|227455275|gb|ACP34028.1| Replicative DNA helicase [Corynebacterium aurimucosum ATCC 700975]
          Length = 474

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 49/194 (25%), Gaps = 7/194 (3%)

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
           +   ++       + +        E  +L  ++  P  + E  +EL    +       ++
Sbjct: 23  RRSYRQEEPKRYGEFRQPPADREAEQGVLGAMLLSPNTVMEVIEELEPEDFYYPAHTLIY 82

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGE-------LLKQLDRQVRDAGLWSATTEANIV 572
             +   +          +  RL      E       L   L      A            
Sbjct: 83  QAMIDLYAAGTDIDAVIVAARLDRYNNLERVGGAPYLHTLLATVPTAANARYYAEIVAEK 142

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            V +    A     +      +  EIE  + +   +  A            +   I    
Sbjct: 143 AVLRKLVDAGTRVVQLGFQGSEDMEIESVLDRAQQEVFAVAQKKTTEDYRALSDLIDPTI 202

Query: 633 SQEAMIEGFGKMSG 646
            + A ++  G  SG
Sbjct: 203 DELAALQQNGVESG 216


>gi|25029372|ref|NP_739426.1| replicative DNA helicase [Corynebacterium efficiens YS-314]
 gi|259508446|ref|ZP_05751346.1| replicative DNA helicase [Corynebacterium efficiens YS-314]
 gi|23494660|dbj|BAC19626.1| putative replicative DNA helicase [Corynebacterium efficiens
           YS-314]
 gi|259164000|gb|EEW48554.1| replicative DNA helicase [Corynebacterium efficiens YS-314]
          Length = 527

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 63/208 (30%), Gaps = 14/208 (6%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
              +   G GR  +   R   + G  +          +     +  E  +L  ++  P  
Sbjct: 53  NRGSRDGGAGRDGRSFNRGPGRGGRDRETGSREYRDFRSPPYDNDAEMGVLGAMLLSPNT 112

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC----------ERGFG 547
           + +    L    +     Q ++  +   F + K   P  +  RL                
Sbjct: 113 VIDILDVLTPDDFYRPAHQLIFQAIIDLFSDNKDIDPVIVSGRLDRTNDLERVGGGAYLH 172

Query: 548 ELLKQLDRQVRDAGLWSATTEANIV----DVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            L++ +             +E  ++    D      Q          +    +  ++++ 
Sbjct: 173 TLIQSVPTAANARYYAEIVSEKAVLRRLVDAGTRVVQLGYEGDDGAEIDAVIDRAQQEVF 232

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI 631
            V+ K + E  A+L  IL +   ++ Q+
Sbjct: 233 AVSQKNQTEDYAVLADILGDTMEELEQL 260


>gi|332528193|ref|ZP_08404221.1| ATP-dependent chaperone ClpB [Rubrivivax benzoatilyticus JA2]
 gi|332112761|gb|EGJ12554.1| ATP-dependent chaperone ClpB [Rubrivivax benzoatilyticus JA2]
          Length = 864

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 75/204 (36%), Gaps = 4/204 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++KY+ + +   R ++K          +  +++    K ++     + + A++    ++H
Sbjct: 318 YRKYVEKDAALERRFQKVLVDEPSVEATVAILRGLQEKYEVHHGVEITDPAIVAAAELSH 377

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL- 553
             I      +   I   +    K+   + S            I  ++      +   +  
Sbjct: 378 RYITDRFLPD-KAIDLIDEAAAKIKIEIDSKPEAMDRLDRRMIQLKIEREAVKKEQDEAS 436

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            R++          +    D+ + +    A  +    +  + + I+ QI ++  KG+  +
Sbjct: 437 QRRLGLIEEELLKLQREYNDLEEIWTAEKAQAQGSAQVKEEIDRIKFQIEELKRKGDFNR 496

Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636
            A L    L E+  ++ + +++EA
Sbjct: 497 VAELQYGKLPELEKRLKEAQAKEA 520


>gi|39938561|ref|NP_950327.1| hypothetical protein PAM_075 [Onion yellows phytoplasma OY-M]
 gi|39721670|dbj|BAD04160.1| hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 292

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 81/256 (31%), Gaps = 48/256 (18%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQR--------- 91
            CP H  K P+     S    +C+ C    D +     +    SF E++QR         
Sbjct: 37  PCPIHQGKNPTCCHFTSNNKIHCWKCGKDYDLIDVYMVIRQIKSFSEAIQRIEGFMNSFE 96

Query: 92  ------------------LAAIAGVPLPVVDPKIEKKEKIQTDLIR----LIEVATDFFH 129
                             L  +     P      ++    +  L +    L     D++H
Sbjct: 97  FKTLSQQEKETTKITINPLKQLYHSMKPKQPVDEQEINIKKKQLFQKISPLFNQIRDYYH 156

Query: 130 HSLKNARDKRLH----YYLDERGIDSHAIEMFKLGYAPDSRYSLRE----HLRQKGFSEE 181
           + L   R+        Y   +R +    I+ FKLGYAP S  SL      + +++     
Sbjct: 157 YLLTTNRNNESQPGLTYLTKKRKLTLETIKEFKLGYAPLSDKSLSFRLVNYCKKQNIDTT 216

Query: 182 KIIEAGL---LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKY 233
           K++E G     I        +D F   +I P+ +   +   F           + +    
Sbjct: 217 KLVEYGFIKEKISQQGKKYFHDTFHGSIIIPVENGYNKTFHFYQNHFREVSYFQPKYQAL 276

Query: 234 LNSPETILFHKGKNLY 249
            N  +T   H     +
Sbjct: 277 TNFSQTPTLHFSYRFF 292


>gi|328912210|gb|AEB63806.1| SPBc2 prophage-derived uncharacterized protein yorJ [Bacillus
           amyloliquefaciens LL3]
          Length = 378

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/341 (12%), Positives = 100/341 (29%), Gaps = 66/341 (19%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGD------YWACCPFHDEKTPSF- 53
           M Y +     +   + + ++   +       +   + D      Y   C  H+  + S+ 
Sbjct: 1   MKYDK---DRIKESLTLEDI---HKILKELGSENNQWDQQGNPIYRTVC--HNASSGSYK 52

Query: 54  --HCNDSKGFYYCFS-CHVKGDHLSFL-----SALLGCSFIESVQRLAAIAGVPLPVVDP 105
             + +++K  ++C++ C    D    +        +  SF ++++ +A +AG        
Sbjct: 53  LYYYHEAKQ-FHCYTECGDTFDVFELVIRAKRQKGINISFNQAIEYVARLAG----RTFG 107

Query: 106 KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
              ++     DLI   E    F                   + I        +       
Sbjct: 108 FGNRETFTNNDLIDDWEWMGKF----------------KKRKKIGIELPSFNETVLD--- 148

Query: 166 RYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
                  +            +   ++       +  +   +  P R    ++I    R+L
Sbjct: 149 -----VFMPYPHQMWLDEGISMQTLNDFEIGYYFRSYTEGITIPHRDLNNRLIGIRRRSL 203

Query: 226 SKGE-SVKYLNSP---ETILFHKG--KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279
            K E    Y   P   E  L++     NLY      + +++  +  +  +  S +   + 
Sbjct: 204 IKEEVDAGYKYMPLKVENTLYNHQTMMNLYGLHKTKDSIERFKKALIFESEKSVLKCQDF 263

Query: 280 YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320
           Y +             +     ++ +   +L  L    V  
Sbjct: 264 YGEAN--------FTCAVCSNNISNFHRDILLSLGVEEVFI 296


>gi|302520482|ref|ZP_07272824.1| replicative DNA helicase [Streptomyces sp. SPB78]
 gi|302429377|gb|EFL01193.1| replicative DNA helicase [Streptomyces sp. SPB78]
          Length = 496

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/193 (11%), Positives = 61/193 (31%), Gaps = 26/193 (13%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                ++  +    E ++L  ++     + +  + L    +     + ++  +   + + 
Sbjct: 54  PAAFERVPPQDLDAEQSVLGGMLLSKDAIADVVEILKGSDFYRPAHEVVYQAILDLYAKG 113

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +   P  +   L  RG      ++ +      L +           + Y + +      R
Sbjct: 114 EPADPITVAAELTRRG------EITKVGGAPYLHTLVQTVPTAANAEYYAEIVH----ER 163

Query: 590 LLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIES 633
            + R+  E   +I Q+    +    E      + + +V  Q                ++ 
Sbjct: 164 AVLRRLVEAGTRITQMGYAADGDVDEIVNNAQAEVFKVTEQRTSEDYLPLGDIMEGALDE 223

Query: 634 QEAMIEGFGKMSG 646
            EA+    G+M+G
Sbjct: 224 IEAIGSRSGEMTG 236


>gi|147668726|ref|YP_001213544.1| hypothetical protein DehaBAV1_0074 [Dehalococcoides sp. BAV1]
 gi|146269674|gb|ABQ16666.1| hypothetical protein DehaBAV1_0074 [Dehalococcoides sp. BAV1]
          Length = 867

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 19/72 (26%)

Query: 1  MNYP--RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
          M     +  I D+L  +              +        + ACCP H++K PS   ++ 
Sbjct: 1  MTIATRKYTIDDILAKL--------------QGVKKNGSGFMACCPAHEDKNPSLSISEK 46

Query: 59 KG--FYYCF-SC 67
           G     CF  C
Sbjct: 47 DGKVLLKCFAGC 58


>gi|315607180|ref|ZP_07882184.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315251234|gb|EFU31219.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 330

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 5  RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           + +  +    PI   +         +  +V   Y    P   E  PSF  +  K  +  
Sbjct: 3  EEDLSRIKQ-YPIVEYLESK-GIKPVRRTSVYALYR--SPLRAETHPSFKVDTEKNLWID 58

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
          ++    G  +     L GC+  E++  L   A
Sbjct: 59 YAECRGGSIIDLCMRLEGCTLSEAIHHLGQNA 90


>gi|146296474|ref|YP_001180245.1| hypothetical protein Csac_1454 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410050|gb|ABP67054.1| hypothetical protein Csac_1454 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 372

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 93/306 (30%), Gaps = 24/306 (7%)

Query: 53  FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
            + N  K  ++C  C + G+ L   + L      E+ + L  I    L     +  K   
Sbjct: 48  LYINVHKNTFFCHRCGIGGNALQLYAWLNNIDTKEAYKELVQI----LTKGTKRARKAVA 103

Query: 113 IQTDLIRLIEVATD----------FFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGY 161
             T    +    T+           +H  LK    D++   +L  RG+    I+      
Sbjct: 104 EPTATYDVNATQTENLAPVEQRDLVYHEFLKLLDLDEKYREHLLSRGVTDTFIKFKGYRS 163

Query: 162 APDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFG 221
                   R+ + +    +   +EA       ++        N    P+ S  G +    
Sbjct: 164 LNVKDERKRKEICKTLIEKGLTLEAVPGFFKHSNGEWDFVPYNGFCIPVVSLEGMIQGLQ 223

Query: 222 GRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM 281
            R +    S KY       +            A N++      +  +    FII      
Sbjct: 224 VRIVGDTNSGKYRWFSSGNISTGTS-------AKNFVHVVGTFNEEKYKRVFIIEGALKA 276

Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKAIDLVL 339
           D+ S    G   V      +  +  ++++ K  L   + + FD D    +   +A + + 
Sbjct: 277 DICSYLMDGELFVALPGVNSSHDEAVQIVKKLGLKNEVFIVFDNDIIEKKEVQEAYERLK 336

Query: 340 CHLIPG 345
                 
Sbjct: 337 RKFKNE 342


>gi|323341117|ref|ZP_08081365.1| replicative DNA helicase DnaB [Lactobacillus ruminis ATCC 25644]
 gi|323091538|gb|EFZ34162.1| replicative DNA helicase DnaB [Lactobacillus ruminis ATCC 25644]
          Length = 465

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 71/190 (37%), Gaps = 16/190 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
             + + L+ G +  +    E A+L  +  +   L +  +++    + + + Q L+  +  
Sbjct: 2   NSLDNDLLAGNMPPQDISAEKAILGAIFLNHEALADVMEQVEPDDFYSRQHQILFQSMIE 61

Query: 525 DFVEQKYFLPEEI------HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                +      +        +L + G    L +L   V  A   +A   A IV  +   
Sbjct: 62  LNDADQPIDVLTMKSSLETKNQLDDAGGVAYLAELANSVPSA--RNAAYYAKIVSAKSRL 119

Query: 579 QQALA--------LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +Q +           K+   +    +E E+QI  V+ +        +  ++ EV+  ++ 
Sbjct: 120 RQLIRTSTDIIALAQKQDDDVENILDEAERQIMDVSERRNKAGFKPIREVVDEVYNHLYD 179

Query: 631 IESQEAMIEG 640
           + + ++ I G
Sbjct: 180 LSNNKSDITG 189


>gi|241999020|ref|XP_002434153.1| myosin heavy chain, putative [Ixodes scapularis]
 gi|215495912|gb|EEC05553.1| myosin heavy chain, putative [Ixodes scapularis]
          Length = 1129

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 70/211 (33%), Gaps = 8/211 (3%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             +L    Q        +     +  R + +           + + +  ++   RE   L
Sbjct: 449 AQKLAAELQDLKLLVEEHMARNAELERKQRRFDGELSTASEGMRQERAQREKVQREKEAL 508

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD-FVEQKYFLPEEIH---QRLC-- 542
                  ++ QE     +++   +++L  L   +    F         ++    Q L   
Sbjct: 509 YA--EKLSLEQELSAVRSELDSQHDKLGSLRREMDELSFSSHGEEEVAKLKRGKQELERK 566

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            R   E L+ L  QV+         E  +   RQ Y++ ++L +     +R     + + 
Sbjct: 567 SREQEEELEDLAGQVQLLEQAKLRLEMALEKQRQEYKREISLREEEMDEARAAASKKLRN 626

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +   + E E+   L     E+  ++ ++ +
Sbjct: 627 LESLLESEQEERQALSRQRQELERRLGELSA 657


>gi|239946610|ref|ZP_04698364.1| MobA/MobL family protein [Rickettsia endosymbiont of Ixodes
            scapularis]
 gi|239920886|gb|EER20911.1| MobA/MobL family protein [Rickettsia endosymbiont of Ixodes
            scapularis]
          Length = 2464

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 66/469 (14%), Positives = 140/469 (29%), Gaps = 65/469 (13%)

Query: 52   SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111
            S   N SKG +   S    G+   F+      S  +S++ +A +AG+             
Sbjct: 1627 SLSMNLSKGTWIRHSSGQGGNIFGFVQEGASVSKRQSLEIVAELAGIRAESSSYD----- 1681

Query: 112  KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171
                            +H  L ++R  +       +   +    + +        +  ++
Sbjct: 1682 ----------------YHAHLASSRANKEQAVEQAKQRLASGWLVAQDKINNADIFDPKK 1725

Query: 172  HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
            HL+                                ++  + +  +++ +  R +SK +  
Sbjct: 1726 HLKGMMQHNIL----------------------EAVYAYKDANDKLLGYVVRFVSKEDGK 1763

Query: 232  KYLNSPETILFHKGKNLYNF---FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
            K    P T  ++  K  Y++     +    +     +    SS  I++VEG    ++  +
Sbjct: 1764 K-QTLPVTYCYNAAKEEYSWRLKGFSDKGDKPIFGIEKAICSSKPILIVEGEKAAIAAAK 1822

Query: 289  A-GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
                  VVS +G +    ++         +++  D D PG +AA    D           
Sbjct: 1823 ILPDHEVVSWMGGSNAADKVNWGQLQWRDVIIWSDNDQPGFKAAEVIKD------KLNKV 1876

Query: 348  VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
             + +      DP            + L  E   L D L +  T        +      + 
Sbjct: 1877 NDHIAFVSVVDPTQLKFNGSVH--KDLFPEKWDLADRLPEGMTIANVKEAIENVRAAHLD 1934

Query: 408  LKNCINHIKDQK---------LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
            L    + I++            R  + +  + ++    +      + Y      ++   +
Sbjct: 1935 LNQIQSVIQNTNSPHVSQRLFERNIWQEVFKGKIVDAERIKSFSANEYKAASFFSSEESN 1994

Query: 459  QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                         V     K  SL    +L +L  H   L E  +EL +
Sbjct: 1995 NYVKYLEATGKGGVVHDYLKYDSLMYQDILTSLATHDERLSENIKELGN 2043


>gi|240168789|ref|ZP_04747448.1| replicative DNA helicase [Mycobacterium kansasii ATCC 12478]
          Length = 603

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/175 (12%), Positives = 54/175 (30%), Gaps = 16/175 (9%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
           P       +   G+   +    E ++L  ++     + +  + L    +     Q ++  
Sbjct: 10  PGMDAPPPTEDFGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDA 69

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +   +   +      +   L  RG   LL+++        L S    A            
Sbjct: 70  ILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AGY 119

Query: 582 LALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630
            A     + + R+  E   ++ Q           AE      + +++V + ++ +
Sbjct: 120 YASIVAEKAVLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVANRRLSE 174


>gi|257415016|ref|ZP_05592026.1| DNA primase [Roseburia intestinalis L1-82]
 gi|257200194|gb|EEU98478.1| DNA primase [Roseburia intestinalis L1-82]
          Length = 145

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 2/102 (1%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            Y+CF C   GD + F +AL G    E+  +LA   G+         K +K +  Q    
Sbjct: 6   RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLSYEDWKPPGKAKKPKPRQKSPE 65

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLG 160
              + A      +L +     + + +D            +  
Sbjct: 66  EQFQEAKSRCFRTLADYLHLLMAWRMDYAPHSPEEAFHHRFV 107


>gi|158320948|ref|YP_001513455.1| zinc finger CHC2-family protein [Alkaliphilus oremlandii OhILAs]
 gi|158141147|gb|ABW19459.1| zinc finger CHC2-family protein [Alkaliphilus oremlandii OhILAs]
          Length = 409

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 2  NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           +  + I     +I +     Q  D  +   N+ K +               H N     
Sbjct: 7  RFTEEQI-QFANNINLLEYAKQSFDVKKVGINSYKIEGHGG----------LHINPETNR 55

Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQR 91
          + CFS    G  + F+      S++E+V++
Sbjct: 56 WNCFSQSKGGGPIQFVMFTENKSWVEAVKK 85


>gi|225850311|ref|YP_002730545.1| ClpB [Persephonella marina EX-H1]
 gi|225645726|gb|ACO03912.1| ClpB [Persephonella marina EX-H1]
          Length = 995

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 68/214 (31%), Gaps = 17/214 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
               R  +++           Y                  RL +   VK   S   +   
Sbjct: 451 IDEYRKHIEKDPALERRFQPVYVEEPDVETTIEILNALKPRLEKHHGVKIDPSAIEAAA- 509

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWS--FLFSDFVEQKYFLPEEIHQRLC 542
             L    +    +  +    L        +L+ +++   +     + K    + +   L 
Sbjct: 510 -KLTHRYVTDRKLPDKAIDALDQ-ACARKKLKLVYAPPEVIEIERKIKMLDEQIVQASLE 567

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                E   ++++   +  L    ++++              + +   L +Q EE+E++I
Sbjct: 568 GDYEKEAQLKIEKAKLEKELKEVMSKSDSE------------HLKLDQLKKQLEELERRI 615

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +   KG+ EK   L     ++  QI ++E + A
Sbjct: 616 IETAEKGDYEKETELKIEKAKLEKQIKELELKIA 649



 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 78/263 (29%), Gaps = 47/263 (17%)

Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
           +      ++   LE   +       D +       A++ RL             +G    
Sbjct: 452 DEYRKHIEKDPALERRFQPVYVEEPDVETTIEILNALKPRL----------EKHHGVKID 501

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
            +A     K   + +    L    +           L  +   P ++ E  +++  +   
Sbjct: 502 PSAIEAAAKLTHRYVTDRKLPDKAIDALDQACARKKLKLVYAPPEVI-EIERKIKMLD-- 558

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
                     +    +E  Y    ++  ++ +    + LK++  +     L     +  +
Sbjct: 559 --------EQIVQASLEGDYEKEAQL--KIEKAKLEKELKEVMSKSDSEHLKLDQLKKQL 608

Query: 572 VDVRQ---------GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE---------- 612
            ++ +          Y++   L      L +Q +E+E +IA+ T   E +          
Sbjct: 609 EELERRIIETAEKGDYEKETELKIEKAKLEKQIKELELKIAEKTVVSEDDVAEVISDWTG 668

Query: 613 -----KTAILISILHEVHIQIHQ 630
                     +  L  +  ++H+
Sbjct: 669 IPISRLKEEEMQRLLRLEEELHK 691



 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            +     K    + +   L  +    L+K L+++  D        ++ + D+     +++
Sbjct: 21  IAQKQGDKLVDTDHLLLALISKKDSPLIKILEKRGIDTEDLVNKIDSYLKDLYSQINRSV 80

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             Y  +       +++++Q+ +V        E+   + +   E+  ++     + +   G
Sbjct: 81  TEYINY------IKDLQRQLTKVRNDLINIQEELKRVSAEKRELENELR--YEESSFWGG 132

Query: 641 FGKM 644
           FG  
Sbjct: 133 FGSS 136


>gi|312962933|ref|ZP_07777420.1| hypothetical protein PFWH6_4856 [Pseudomonas fluorescens WH6]
 gi|311282960|gb|EFQ61554.1| hypothetical protein PFWH6_4856 [Pseudomonas fluorescens WH6]
          Length = 962

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 31  KTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIES 88
           K      +Y A  P   +K   S   N SKG +  F+     GD +  +  + G + +E+
Sbjct: 37  KRVDGGKEYTAPNPTRTDKRAGSLKVNLSKGTWADFATGDKGGDLIDLVRYIDGGTDVEA 96

Query: 89  VQRLAAIAGV 98
            ++LA +  V
Sbjct: 97  CKKLADLLSV 106


>gi|145296969|ref|YP_001139790.1| replicative DNA helicase [Corynebacterium glutamicum R]
 gi|140846889|dbj|BAF55888.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 510

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 70/221 (31%), Gaps = 17/221 (7%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL--- 482
            +  D           E     + + +  R  D +G  +R  +    + +  ++P     
Sbjct: 22  DSFADDAHVDVPAPAFEDFSPAQAFGQGTRGGDSQGFKKRGRKDESREYRDFRQPPYDND 81

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  ++  P  + +    L    +     Q ++  +   F + +   P  +  RL 
Sbjct: 82  AEMGVLGAMLLSPTTVIDILDILTPEDFYRPSHQLIFQAIIDLFSDNRDIDPVIVSGRLD 141

Query: 543 ----------ERGFGELLKQLDRQVRDAGLWSATTEANIV----DVRQGYQQALALYKRF 588
                          +L++ +             +E  ++    D      Q        
Sbjct: 142 RTNDLDRVGGGAYLHDLIQSVPTAANARYYAEIVSEKAVLRRLVDAGTRVVQLGYEGDEG 201

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             +    +  ++++  V+ K ++E  A+L  IL E   ++ 
Sbjct: 202 AEIDAVIDRAQQEVFAVSQKNQSEDYAVLADILDETMAELE 242


>gi|19554173|ref|NP_602175.1| replicative DNA helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62391827|ref|YP_227229.1| replicative DNA helicase [Corynebacterium glutamicum ATCC 13032]
 gi|21325753|dbj|BAC00374.1| Replicative DNA helicase [Corynebacterium glutamicum ATCC 13032]
 gi|41222974|emb|CAF18919.1| PUTATIVE REPLICATIVE DNA HELICASE [Corynebacterium glutamicum ATCC
           13032]
          Length = 510

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 70/221 (31%), Gaps = 17/221 (7%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL--- 482
            +  D           E     + + +  R  D +G  +R  +    + +  ++P     
Sbjct: 22  DSFADDAHVDVPAPAFEDFSPAQAFGQGTRGGDSQGFKKRGRKDESREYRDFRQPPYDND 81

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  ++  P  + +    L    +     Q ++  +   F + +   P  +  RL 
Sbjct: 82  AEMGVLGAMLLSPTTVIDILDILTPEDFYRPSHQLIFQAIIDLFSDNRDIDPVIVSGRLD 141

Query: 543 ----------ERGFGELLKQLDRQVRDAGLWSATTEANIV----DVRQGYQQALALYKRF 588
                          +L++ +             +E  ++    D      Q        
Sbjct: 142 RTNDLDRVGGGAYLHDLIQSVPTAANARYYAEIVSEKAVLRRLVDAGTRVVQLGYEGDEG 201

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             +    +  ++++  V+ K ++E  A+L  IL E   ++ 
Sbjct: 202 AEIDAVIDRAQQEVFAVSQKNQSEDYAVLADILDETMAELE 242


>gi|330858382|ref|YP_004414736.1| Gp32 [Propionibacterium phage PAS50]
 gi|260066593|gb|ACX30871.1| Gp32 [Propionibacterium phage PAS50]
          Length = 133

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
          N  + +    CP  D+  PS   N  KG +YC +C V G
Sbjct: 27 NPSRNEQHILCPLDDDHQPSMSINLDKGVWYCHTCGVGG 65


>gi|300724453|ref|YP_003713774.1| replicative DNA helicase; chromosome replication; chain elongation
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630991|emb|CBJ91673.1| replicative DNA helicase; chromosome replication; chain elongation
           [Xenorhabdus nematophila ATCC 19061]
          Length = 458

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 56/184 (30%), Gaps = 26/184 (14%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            + +   +  E  +L  L+          Q L    +     + ++  +     +   F 
Sbjct: 12  SEEAPSYAYAEVGVLGGLVLENERWDSVVQLLVADDFYFPAHRIIFQAIAELSEKNCPFD 71

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +  RL +RG       +DR    A +   +         + Y + +A   R R L  
Sbjct: 72  LITLTDRLTQRGH------IDRAGGFAYVAEVSKNTPSAANIEEYARIVAEKSRLRQLMA 125

Query: 594 ------------------QKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIES 633
                               E+ E+Q+  +  KG   +     L+     +   + +I+ 
Sbjct: 126 LGKSLSADVFQPNIQSDTLIEQAERQLFTLAEKGSTRQHQEMTLLQGADSLIAHLERIQG 185

Query: 634 QEAM 637
            + +
Sbjct: 186 SQGI 189


>gi|108756869|ref|YP_633238.1| replicative DNA helicase [Myxococcus xanthus DK 1622]
 gi|108460749|gb|ABF85934.1| replicative DNA helicase [Myxococcus xanthus DK 1622]
          Length = 456

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/189 (9%), Positives = 60/189 (31%), Gaps = 24/189 (12%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              +G+   +    E A+L  ++    ++    + +    + +    +++  +     + 
Sbjct: 6   EFREGRKVHEDLAAERAVLGAVLADNTLIAAVGEVVHPEDFSSPAHAQIFEAMLKLDGQS 65

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +      + + L   G    L  +        L      A+         +  A+ +R  
Sbjct: 66  RQVDHLTLAEELKVLGH---LVSVGGPAYLMRLDQVVPIASNAVQYAQIVKDQAIRRRLA 122

Query: 590 LLSRQKEEIEKQ------------------IAQVTAKGEAEKTAILISILHEVHIQIHQI 631
              R+ +++  Q                  +A+   +G+    + L+    ++   + ++
Sbjct: 123 QAGREIQDLASQETGELEVLLDEAERKVFLLAEKKREGDLRPVSELMEHTLDL---LDKM 179

Query: 632 ESQEAMIEG 640
           ++    I G
Sbjct: 180 KAAATGITG 188


>gi|307592486|ref|YP_003900077.1| DnaB domain-containing protein helicase domain-containing protein
           [Cyanothece sp. PCC 7822]
 gi|306986131|gb|ADN18011.1| DnaB domain protein helicase domain protein [Cyanothece sp. PCC
           7822]
          Length = 1156

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 7/148 (4%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  ++  P  + +    L    +     QK++    S     +      +  RL 
Sbjct: 18  AETLILGGILFDPRAIAKVADILTPDNFYAPAHQKIYRVALSLHRSGQPVDLMLVGARLE 77

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           + G       L++    + L +             Y   +  +   R L      I + I
Sbjct: 78  DEGL------LEQVGGVSYLATLIERTVSAANIDRYAAIVVGHGERRELRSLLLTINELI 131

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQ 630
                    E    LI     +   + Q
Sbjct: 132 NDRNYSPS-ELQEKLIEKATALKATVRQ 158


>gi|313115412|ref|ZP_07800882.1| CHC2 zinc finger protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|295103651|emb|CBL01195.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii SL3/3]
 gi|310622253|gb|EFQ05738.1| CHC2 zinc finger protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 173

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 2/109 (1%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            Y+CF C   GD + F +AL G    E+  +LA   G+         K +K +  Q    
Sbjct: 6   RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLSYEDWKPPGKAKKPKPRQKSPE 65

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167
              + A +     L +     + +  D            +   A   + 
Sbjct: 66  EQFQEAKNRCFRILTDYLHLLMAWRTDYAPHSPEEAFHPRFVEALQKQD 114


>gi|224369025|ref|YP_002603189.1| putative DNA primase [Desulfobacterium autotrophicum HRM2]
 gi|224372009|ref|YP_002606174.1| hypothetical protein HRM2_p00160 [Desulfobacterium autotrophicum
           HRM2]
 gi|223691742|gb|ACN15025.1| putative DNA primase [Desulfobacterium autotrophicum HRM2]
 gi|223694728|gb|ACN18010.1| hypothetical protein HRM2_p00160 [Desulfobacterium autotrophicum
           HRM2]
          Length = 178

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 32  TNAVKGDYWACCPFHDEKTPSFH--CNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESV 89
           +   +G Y   CP  +     F+   N       CF+C    + +  +  +   SFI+SV
Sbjct: 31  SKTQEGCYRFQCPVCNG----FNTGINPKTNLARCFNCQKNYNTIDLVMTVKELSFIDSV 86

Query: 90  QRL-AAIAGVPLPVVDPKIEKKEKIQTD 116
             L A    +P+P  +         ++ 
Sbjct: 87  AYLEALKMTIPVPSREAHSPPPTPNRSR 114


>gi|295837788|ref|ZP_06824721.1| replicative DNA helicase [Streptomyces sp. SPB74]
 gi|295826670|gb|EFG64971.1| replicative DNA helicase [Streptomyces sp. SPB74]
          Length = 515

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/193 (11%), Positives = 61/193 (31%), Gaps = 26/193 (13%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                ++  +    E ++L  ++     + +  + L    +     + ++  +   + + 
Sbjct: 73  PAAFERVPPQDLDAEQSVLGGMLLSKDAIADVVEILKGSDFYRPAHEVVYQAILDLYAKG 132

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +   P  +   L  RG      ++ +      L +           + Y + +      R
Sbjct: 133 EPADPITVAAELTRRG------EITKVGGAPYLHTLVQTVPTAANAEYYAEIVH----ER 182

Query: 590 LLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIES 633
            + R+  E   +I Q+    +    E      + + +V  Q                ++ 
Sbjct: 183 AVLRRLVEAGTRITQMGYAADGDVDEIVNNAQAEVFKVTEQRTSEDYLPLGDIMEGALDE 242

Query: 634 QEAMIEGFGKMSG 646
            EA+    G+M+G
Sbjct: 243 IEAIGSRSGEMTG 255


>gi|255324075|ref|ZP_05365200.1| replicative DNA helicase [Corynebacterium tuberculostearicum SK141]
 gi|311740297|ref|ZP_07714128.1| replicative DNA helicase DnaB [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|255298932|gb|EET78224.1| replicative DNA helicase [Corynebacterium tuberculostearicum SK141]
 gi|311304680|gb|EFQ80752.1| replicative DNA helicase DnaB [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 476

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 50/161 (31%), Gaps = 11/161 (6%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           Q+       + +        E  +L  ++  P  + E  +EL    +       ++  + 
Sbjct: 28  QQEEPKRYGEFRQPPADREAEQGVLGAMLLSPHTVMEVIEELEPEDFYYPAHTLIYRAML 87

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
             + E K      +  +L           L+R      L +           + Y + +A
Sbjct: 88  DLYSEGKDVDAVILASQLDR------FNNLERVGGAPYLHTLLATVPTAANARYYAEIVA 141

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKG-EAEKTAILISILHE 623
                + + R+  +   ++ Q+   G E  +   ++    +
Sbjct: 142 ----EKAVLRKLVDAGTRVVQLGFSGTEDAEIESVLDRAQQ 178


>gi|301057462|ref|ZP_07198560.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300448433|gb|EFK12100.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 108

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 2  NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC--NDSK 59
           + ++ + +L  HIPI+ LI   +   +  +   +G +   CP   E    FH   N   
Sbjct: 3  RFTQNELFELRNHIPINALIENRL---KIPSKISEGQFRFLCPLCGE----FHTATNPKT 55

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
              CF C    + +  +      SF+E+V  L
Sbjct: 56 NLARCFRCERNFNTIDMVMTCESTSFVETVHTL 88


>gi|195952509|ref|YP_002120799.1| replicative DNA helicase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932121|gb|ACG56821.1| replicative DNA helicase [Hydrogenobaculum sp. Y04AAS1]
          Length = 485

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 63/195 (32%), Gaps = 25/195 (12%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
             +  L+  + +      +    E ++L +++     +    + L +  +       L+ 
Sbjct: 2   NNTDTLLNKNSILDIDLPRDEAAERSVLGSMLYDLENIPVVAEVLKEDDFFEPIHSTLFK 61

Query: 521 FLFSDFVEQKYFLPEE---IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
            L   + E       +   +   + ++     +  +     +A +  A T+  I      
Sbjct: 62  LLLEYYFENANLNTIDRVLLKDFIEKKK----ITDIAEDFLEALVLEAVTDIEI------ 111

Query: 578 YQQALALYKRFRLLSRQKEEI-EKQIAQVTAKGEAEKTAILIS-ILHEVHI--------Q 627
             Q++    + + + R    +  K I +     ++      I   L  +          +
Sbjct: 112 -LQSVIKIIKEKAIQRAIINLGIKIIRETKQTQDSNILIETIQSELINIASDNVNVGYFE 170

Query: 628 IHQ-IESQEAMIEGF 641
           +   +E+  ++IE F
Sbjct: 171 LKDILENVISIIEKF 185


>gi|269958180|ref|YP_003327968.1| hypothetical protein Xcel_3411 [Xylanimonas cellulosilytica DSM
          15894]
 gi|269306861|gb|ACZ32410.1| hypothetical protein Xcel_3411 [Xylanimonas cellulosilytica DSM
          15894]
          Length = 1776

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 15/77 (19%)

Query: 4  PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG--- 60
          PR  +  +   I                       + A CP H +KTPS H +  +G   
Sbjct: 17 PRSSLDRVRQTID---------SLGLAVREVRADGFMAACPAHGDKTPSLHVSWVRGQRG 67

Query: 61 ---FYYCFSCHVKGDHL 74
              ++C +     D +
Sbjct: 68 GSVLFHCHASCETQDVI 84


>gi|167770911|ref|ZP_02442964.1| hypothetical protein ANACOL_02264 [Anaerotruncus colihominis DSM
           17241]
 gi|167666951|gb|EDS11081.1| hypothetical protein ANACOL_02264 [Anaerotruncus colihominis DSM
           17241]
          Length = 174

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 2/109 (1%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118
            Y+CF C   GD + F +AL G    E+  +LA   G+         K +K +  Q    
Sbjct: 6   RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLSYEDWKPPGKAKKPKSRQKSPE 65

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167
              + A +     L +       +  +        I   +   A   + 
Sbjct: 66  EQFQEAKNHCFRILADYLHLLRVWRKEYAPHSPEEIFHPRFVEALQKQD 114


>gi|145517734|ref|XP_001444750.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412172|emb|CAK77353.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1023

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 94/252 (37%), Gaps = 12/252 (4%)

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF---------QKYITEHSGYGR 448
            DE ++ +  + N  + + D  ++    +  +D++ QL           + +      G 
Sbjct: 142 HDELSQAKQTIANYEDQLADLAIKDQVIKEQKDKINQLLVEIEFWKKRYQQLDTDRIKGI 201

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
              K +    +      L +S  ++ +  +         L  L      L++   +L   
Sbjct: 202 EEFKKSSETLRNSQFNELRRSGSMQAQGYQNELKNLRVQLERLQQENNELKDNIHQLESS 261

Query: 509 -RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
               N++ +++ + L S   E K      + +    +     +K+L+RQV +  +     
Sbjct: 262 KNGQNSQFKEVNTKLESSTKEIKRLNDILLQRGQQNKQLELRIKELERQVSEKNILKEEI 321

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +     +    +Q    + +   L+ +  E+E+ + +  +K   EK   L + + ++   
Sbjct: 322 DKLKQQLNDKNKQLQEQHNQITQLNNRIAELERLLQE--SKQYKEKIQQLQTEIAQLKAI 379

Query: 628 IHQIESQEAMIE 639
           I   + + A+++
Sbjct: 380 IQGKDEEIAILK 391


>gi|184201980|ref|YP_001856187.1| replicative DNA helicase [Kocuria rhizophila DC2201]
 gi|183582210|dbj|BAG30681.1| replicative DNA helicase [Kocuria rhizophila DC2201]
          Length = 450

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 61/190 (32%), Gaps = 22/190 (11%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S    G+     +  E ++L  ++     + +  + L  + +     + ++  + S +  
Sbjct: 8   SREDYGRTMPHDNQAEQSVLGGMMLSKDAIADVVEVLRGVDFYKPAHENIYDAVVSLYGR 67

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            +      +   L + G    ++++        L ++   A             A   R 
Sbjct: 68  GEPADAITVGDELTKNG---EIERIGGIAYLHSLIASVPTAAN-------AGFYAEIVRE 117

Query: 589 RLLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIHQ---------IESQEA 636
           R + R+  E   +I Q+    +    +        +++V  +            +E+   
Sbjct: 118 RAVLRRLVEAGTKIVQLGYAQDGEVDDIVNEAQGEIYQVAERRTAEDYVPLKDVMEATVD 177

Query: 637 MIEGFGKMSG 646
            IE  G  SG
Sbjct: 178 EIEAAGSRSG 187


>gi|121610528|ref|YP_998335.1| ATPase [Verminephrobacter eiseniae EF01-2]
 gi|121555168|gb|ABM59317.1| ATPase AAA-2 domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 867

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 74/207 (35%), Gaps = 2/207 (0%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R ++K          S  +++    K ++     + + A++       
Sbjct: 317 YRKYIEKDAALERRFQKILVDEPTVEASIAILRGLQEKYEVHHGVDITDPAIVAAAELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL-D 554
             + +++     I   +    K+   + S            I  ++          +   
Sbjct: 377 RYITDRFLPDKAIDLIDEAASKIKIEMDSKPEVMDKLDRRLIQVQIEREAVRREKDEASQ 436

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +++          +  I D  + +Q   A  +    L    +++  QI + T KG+  K 
Sbjct: 437 KRLALIEEEITRLQKEIADYDEIWQAEKAQAQGSAQLREAIDKLRFQIEEFTRKGDFNKV 496

Query: 615 AIL-ISILHEVHIQIHQIESQEAMIEG 640
           A L    L  +  Q+ Q ++QEA  +G
Sbjct: 497 AELQYGQLPALEKQLRQAQAQEAGKDG 523


>gi|301064178|ref|ZP_07204623.1| conserved domain protein [delta proteobacterium NaphS2]
 gi|300441719|gb|EFK06039.1| conserved domain protein [delta proteobacterium NaphS2]
          Length = 297

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 55/299 (18%), Positives = 94/299 (31%), Gaps = 44/299 (14%)

Query: 53  FHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107
            H + S+  +  FS    G  + F     L      +  E  + +    G+      PK 
Sbjct: 1   MHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMTMSEVARWMVKE-GIA-TANHPKS 58

Query: 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167
             K+K +                 L+    +        RGI +        G+ P    
Sbjct: 59  LVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR-----RGISATTCRYLGCGFLPRRS- 112

Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
                             + L                 L   I +  G+ ++       +
Sbjct: 113 -------------WAKTGSPLNSRLVFQVRGVRENGQGLQPVILTHTGRALSME----QE 155

Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
             + KY + P    F K   +YN    L          + + +   +IL EG+ DV  L 
Sbjct: 156 ELNGKYWSYP----FKKAWEIYNQDNIL-----LDEAALGQTNMFGLILTEGFFDVAKLV 206

Query: 288 QAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
           +AG +N V+ +G A++  Q+  L         PRI+L  D D  G   A +  + +  H
Sbjct: 207 EAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILLFLDRDPAGKTGALQVRERLFHH 265


>gi|183980111|ref|YP_001848402.1| replicative DNA helicase DnaB [Mycobacterium marinum M]
 gi|183173437|gb|ACC38547.1| replicative DNA helicase DnaB [Mycobacterium marinum M]
          Length = 460

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 3/122 (2%)

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
              S   G+   +    E ++L  ++     + +  + L    +     Q ++  +   +
Sbjct: 16  PPPSEDFGRQPPQDLAAEQSVLGGMLLSKDAVADVLERLRPGDFYRPAHQNIYDAILDLY 75

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
              +      +   L  RG   LL+++        L S    A       G     AL +
Sbjct: 76  GRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAANAGYYAGIVGEKALLR 132

Query: 587 RF 588
           R 
Sbjct: 133 RL 134


>gi|150010464|ref|YP_001305207.1| DNA primase [Parabacteroides distasonis ATCC 8503]
 gi|237708337|ref|ZP_04538818.1| DNA primase [Bacteroides sp. 9_1_42FAA]
 gi|149938888|gb|ABR45585.1| DNA primase [Parabacteroides distasonis ATCC 8503]
 gi|229457558|gb|EEO63279.1| DNA primase [Bacteroides sp. 9_1_42FAA]
          Length = 295

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I++    I + + +    +    +R  +      W   PF  EK  SF  +  K  +Y F
Sbjct: 3  IQEAKN-IRLVDFLAGFGHEPVIQRGNSV-----WYKSPFRTEKEASFKVDLHKELWYDF 56

Query: 66 SCHVKGDHLSFLSAL 80
               GD ++    +
Sbjct: 57 GLGKGGDIITLAKEI 71


>gi|238926663|ref|ZP_04658423.1| DNA replication protein DnaC [Selenomonas flueggei ATCC 43531]
 gi|238885609|gb|EEQ49247.1| DNA replication protein DnaC [Selenomonas flueggei ATCC 43531]
          Length = 448

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/151 (10%), Positives = 51/151 (33%), Gaps = 10/151 (6%)

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
            ++ + +G++  +    E ++L  ++  P  + +  + L    +     + ++  +    
Sbjct: 6   KENDMPEGRVPPQSIEAELSVLGAMMLKPQAVSQAVELLHADDFYRQAHRAVFEAMEELL 65

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
              +      + + L + G       LD+    + L + T           Y + +    
Sbjct: 66  RNGEPVDIVTVTESLKKSGL------LDQVGGISFLANLTNTVPSTANLAHYAKIV---- 115

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
           + + + R   +   +IA    +   +    L
Sbjct: 116 KEKAVLRALIDASTEIAGAAYEASEDIAEQL 146


>gi|118615987|ref|YP_904319.1| replicative DNA helicase DnaB [Mycobacterium ulcerans Agy99]
 gi|118568097|gb|ABL02848.1| replicative DNA helicase DnaB [Mycobacterium ulcerans Agy99]
          Length = 460

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 3/122 (2%)

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
              S   G+   +    E ++L  ++     + +  + L    +     Q ++  +   +
Sbjct: 16  PPPSEDFGRQPPQDLAAEQSVLGGMLLSKDAVADVLERLRPGDFYRPAHQNIYDAILDLY 75

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
              +      +   L  RG   LL+++        L S    A       G     AL +
Sbjct: 76  GRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAANAGYYAGIVGEKALLR 132

Query: 587 RF 588
           R 
Sbjct: 133 RL 134


>gi|118092662|ref|XP_421604.2| PREDICTED: similar to KIAA0583 protein [Gallus gallus]
          Length = 1850

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/269 (10%), Positives = 86/269 (31%), Gaps = 18/269 (6%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           +           +    +  + + +   + +      ++    + +   +    Q   +R
Sbjct: 249 QAEEENRRLQKQIDMLMKQRDTAIHFQQQYSSSLRRFESVQQELSNATAQNKELQREMER 308

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           LQ    ++ T      +  +K    RD      RL+ S   +          E  L  + 
Sbjct: 309 LQSEVTRFKTMQLKAAKDSEKYKEERDSVFNEYRLIMSERDQVIKEVDKLQTELELAESK 368

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGEL 549
           + + +         ++ R  + E++ L         +      E  ++ +    + +  +
Sbjct: 369 LKNTS---------SEKRVASEEMEALRQ-----IQDSATLDIERANKEIEMLRKQYEAM 414

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            ++L   V++A +     +    +  +   +  ++      L R+++     +A+     
Sbjct: 415 SQELKEAVQEAEVAKCRRDWAFQERDKIVAERESIRTLCDNLRRERDRAVSDLAEALRNL 474

Query: 610 EAEKTAIL--ISILHEVHIQIHQIESQEA 636
           +  +      +  L E+  ++     +EA
Sbjct: 475 DDMRKQKNDAMRELKELKEKMENQLEKEA 503


>gi|254796909|ref|YP_003081746.1| replicative DNA helicase [Neorickettsia risticii str. Illinois]
 gi|254590145|gb|ACT69507.1| replicative DNA helicase [Neorickettsia risticii str. Illinois]
          Length = 494

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 58/182 (31%), Gaps = 20/182 (10%)

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
            ++              E  +L  L+ +     E  + ++   +     +K++  L    
Sbjct: 23  QKALSNSSAELPNNIEAEQLILGALLTNNDACDEIEELISSSSFYAPVHRKIFEVLLHLR 82

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
            ++    P  +   L        L  +  Q     +    +    V       Q L + +
Sbjct: 83  SKELVANPVTLKNYLES---SNELSAIGGQEYLLNIIEKASIVVDVSSLARVIQELYIRR 139

Query: 587 RFRLL-----------------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +  +L                 S Q EE E  + Q+ + GE + + + IS   E+ ++  
Sbjct: 140 QLIVLAQKIISGATGEQSNTTTSEQIEEAEHSLFQLASSGELDPSCLHISKPIEIAVERA 199

Query: 630 QI 631
           +I
Sbjct: 200 KI 201


>gi|317496119|ref|ZP_07954479.1| replicative DNA helicase [Gemella moribillum M424]
 gi|316913694|gb|EFV35180.1| replicative DNA helicase [Gemella moribillum M424]
          Length = 453

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 10/155 (6%)

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
               L E +LL  L+  P  L E    +    + + + + ++S +              I
Sbjct: 6   DSVLLAEQSLLGALMQEPEKLIEVKATVDPEDFYDEKNKDIYSAILRLDEAGILPDTTTI 65

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            + +   G     K +D  +    ++  T  A      +       L KR   + R+   
Sbjct: 66  FEEINNSG---AFKNVDASLYIVDVYDVTPSA------RNIMHYANLVKR-YSIYREIRG 115

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
                 +   +G A+  A+  ++  +V   + + +
Sbjct: 116 ALLSSTEEMNQGNADIDALTSTLFDQVERAMERAK 150


>gi|332232530|ref|XP_003265457.1| PREDICTED: leucine zipper putative tumor suppressor 1 [Nomascus
           leucogenys]
          Length = 596

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 85/250 (34%), Gaps = 29/250 (11%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  R +  + +   L    +         G   K  ++ +     SQR  Q   ++    
Sbjct: 279 KLQRSFEEKELASSLAYEERPRRCRDELEGPEPKGGSKLKQASQKSQRAQQVLHLQVLQL 338

Query: 478 KKPSLREAALLLTLINHPAILQEQYQ-----------ELADIRYDNNELQKLWSFLFSDF 526
           ++   +    L +L+    +L+ + +            L + +++    + L S +    
Sbjct: 339 QQEKRQLRQELESLMKEQDLLETKLRSYEREKTSFGPALEETQWEVRPRRALISVIHQQL 398

Query: 527 VE------QKYFLPEEIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
            E       K      +  +L +      G     + L+  +R  GL     E    +++
Sbjct: 399 KESQTEVNAKASEILGLKAQLKDTRGKLEGLELRTQDLEGALRTKGLELEVCE---NELQ 455

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIH-QI 631
           +   +A  L ++  LL ++ +E+  Q A     G     E    L   L  +  ++  + 
Sbjct: 456 RKKNEAELLREKVNLLEQELQELRAQAALARDMGPPTFPEDVPALQRELERLRAELREER 515

Query: 632 ESQEAMIEGF 641
           +  + M  GF
Sbjct: 516 QGHDQMSSGF 525


>gi|116174728|ref|NP_001070680.1| dynactin 1a [Danio rerio]
 gi|75914611|gb|ABA29740.1| dynactin 1a [Danio rerio]
          Length = 1218

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 104/316 (32%), Gaps = 31/316 (9%)

Query: 333 KAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETEN 392
           K ++     L         +  +  D    ++   K A E L  +   + +M    +   
Sbjct: 195 KEMEKYKIQLEQLQEWRSKMQEQQNDLQKQLKEAKKEAREALEAKDRYMEEMADTADAIE 254

Query: 393 RSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452
            +    +   E    L+     +K++           + L    +    E    G     
Sbjct: 255 MATLDKEMAEERAESLQQETESLKEKL----------EELTMDMEILKHEIEEKGSDGAA 304

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPAILQEQYQEL-AD 507
           ++ H  Q       ++ +LV+ +       +E   L   +         L+ Q ++L  +
Sbjct: 305 SSYHVKQLEEQNARLKEALVRMRDLSSSEKQEHVKLQKQMEKKNSELETLRSQKEKLQEE 364

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSA 565
           ++   + + +L   + +          EE+ + L ER     E +++L   V D    + 
Sbjct: 365 MKLAEDTIDELKEQVDAALGA------EEMVETLTERNLDLEEKVRELRETVSDLESINE 418

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA-----EKTAILISI 620
             +    + R+     L L ++  L   +  E +K++               K   L + 
Sbjct: 419 MNDELQENARET---ELELREQLDLAGARVREAQKRVEAAQETLADYQQTINKYRELTTH 475

Query: 621 LHEVHIQIHQIESQEA 636
           L EV+ ++   +S  A
Sbjct: 476 LQEVNRELTNQQSSSA 491



 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 80/242 (33%), Gaps = 20/242 (8%)

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
                  +++ LR    + + ++L+ L  K   + +      K   +    +    ++ +
Sbjct: 158 APATPSKEEESLRAQ-LKDLEEKLETLRMKRSEDKAKLKEMEKYKIQLEQLQEWRSKMQE 216

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                 K  K+        L     +   + +    +     D          +  +  E
Sbjct: 217 QQNDLQKQLKEAKKEAREALEAKDRYMEEMADTADAIEMATLD--------KEMAEERAE 268

Query: 529 QKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                 E + ++L E     E+LK    +    G  S+     + +     ++AL   + 
Sbjct: 269 SLQQETESLKEKLEELTMDMEILKHEIEEKGSDGAASSYHVKQLEEQNARLKEALVRMRD 328

Query: 588 FRLLSRQKE-EIEKQIAQVTAKGE-----AEKTAILISI----LHEVHIQIHQIESQEAM 637
                +Q+  +++KQ+ +  ++ E      EK    + +    + E+  Q+      E M
Sbjct: 329 LSSSEKQEHVKLQKQMEKKNSELETLRSQKEKLQEEMKLAEDTIDELKEQVDAALGAEEM 388

Query: 638 IE 639
           +E
Sbjct: 389 VE 390


>gi|319950612|ref|ZP_08024519.1| replicative DNA helicase [Dietzia cinnamea P4]
 gi|319435720|gb|EFV90933.1| replicative DNA helicase [Dietzia cinnamea P4]
          Length = 607

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 49/160 (30%), Gaps = 15/160 (9%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           G+   +    E ++L  ++     + +  +E+    +     Q ++  +   +   +   
Sbjct: 25  GRTPPQDLTAEQSVLGGMLLSKDAIADVVEEIQPGDFYKPAHQAIYDVILDLYARGEPAD 84

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +   L  RG       L R      L +  +          Y Q +A     + + R
Sbjct: 85  AVTVAAELDRRG------DLRRAGGAPYLHTLISTVPTAANAGYYAQIVA----EKAVLR 134

Query: 594 QKEEIEKQIAQVTAKGEA-----EKTAILISILHEVHIQI 628
           +  +   +I Q    G       E      + + EV  + 
Sbjct: 135 RLVDAGTRIVQYGYSGSEGSDVAEVVDRAQAEIFEVTERR 174


>gi|300724355|ref|YP_003713673.1| replicative DNA helicase [Xenorhabdus nematophila ATCC 19061]
 gi|297630890|emb|CBJ91567.1| replicative DNA helicase [Xenorhabdus nematophila ATCC 19061]
          Length = 458

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 55/184 (29%), Gaps = 26/184 (14%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            + +   +  E  +L  LI            L    +     + L+  +     +   F 
Sbjct: 12  SEEAPSYAYAEVGVLGGLILENDRWDSVELLLVADDFYFPAHRILFQAIAELSEQNCPFD 71

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +  RL +RG       +DR    A +   +         + Y + +A   R R L  
Sbjct: 72  LITLTDRLTQRGH------IDRAGGFAYVAEVSKNTPSAANIEEYARIVAEKSRLRQLMA 125

Query: 594 ------------------QKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIES 633
                               E+ E+Q+  +  KG   +     L+     +   + +I+ 
Sbjct: 126 LGKSLSADVFQPNIQSDTLIEQAERQLFTLAEKGSTRQHQEMTLLQGADSLIAHLERIQG 185

Query: 634 QEAM 637
            + +
Sbjct: 186 SQGI 189


>gi|194396803|ref|YP_002037974.1| Tn5253 hypothetical protein [Streptococcus pneumoniae G54]
 gi|194356470|gb|ACF54918.1| Tn5253 conserved hypothetical protein [Streptococcus pneumoniae
           G54]
          Length = 361

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 18/125 (14%)

Query: 8   IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
           I++    I I ++  +  + + +  ++  +       P HD    SF    +   +  FS
Sbjct: 3   IEECK-KISILDVASRLGISFKQVSSSVYEH------PEHD----SFRIFSTTNTFKWFS 51

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ---TDLIRLIEV 123
             ++GD + F+  + G SF E++  L+     P      + +++         +      
Sbjct: 52  RDIQGDVIDFVRLVKGISFKEALAFLSEE---PFQKETVQEKRERPFYYPLKRIEDSHCS 108

Query: 124 ATDFF 128
              ++
Sbjct: 109 LARYY 113


>gi|167764640|ref|ZP_02436761.1| hypothetical protein BACSTE_03030 [Bacteroides stercoris ATCC
          43183]
 gi|167697309|gb|EDS13888.1| hypothetical protein BACSTE_03030 [Bacteroides stercoris ATCC
          43183]
          Length = 295

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I++    I + + +    +    +R  +      W   PF  EK  SF  +  K  +Y F
Sbjct: 3  IQEAKN-IRLVDFLAGFGHEPVIQRGNSV-----WYKSPFRTEKEASFKVDLHKELWYDF 56

Query: 66 SCHVKGDHLSFLSAL 80
               GD ++    +
Sbjct: 57 GLGKGGDIITLAKEI 71


>gi|319763932|ref|YP_004127869.1| ATP-dependent chaperone clpb [Alicycliphilus denitrificans BC]
 gi|330823804|ref|YP_004387107.1| ATP-dependent chaperone ClpB [Alicycliphilus denitrificans K601]
 gi|317118493|gb|ADV00982.1| ATP-dependent chaperone ClpB [Alicycliphilus denitrificans BC]
 gi|329309176|gb|AEB83591.1| ATP-dependent chaperone ClpB [Alicycliphilus denitrificans K601]
          Length = 867

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 74/204 (36%), Gaps = 4/204 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++KYI + +   R ++K          +  +++   V+ +      + + A++    ++H
Sbjct: 317 YRKYIEKDAALERRFQKVLVEEPSVEDTIAILRGLQVRYEAHHGVDITDPAIVAAAELSH 376

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQL 553
             I      +   I   +    ++   + S            I  ++       E  +  
Sbjct: 377 RYITDRFLPD-KAIDLIDEAAARIKIEIDSKPEALDKLERRMIQLKIEREAMKKETDEAS 435

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            ++++      A  E    D+ + ++   A  +    + +  + I  QI  +  KG+  +
Sbjct: 436 QKRLQLIEEELANAEREYADLEEVWKAEKASAQGSEQIRKDIDAIRIQIEDLKRKGDYNR 495

Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636
            A L    L E+  ++ + +  EA
Sbjct: 496 VAELQYGKLPELEKRLKEAQDSEA 519


>gi|298385218|ref|ZP_06994777.1| mobilization protein [Bacteroides sp. 1_1_14]
 gi|298262362|gb|EFI05227.1| mobilization protein [Bacteroides sp. 1_1_14]
          Length = 333

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA------ 96
            P   + TPSF  +     +  F     G  +  +    GC+   ++ RL          
Sbjct: 34  SPLRQDDTPSFKVDYGVNLWCDFGTGEGGSLIDLVMKQYGCNAYGAISRLEQDYYSANTF 93

Query: 97  ---GVPLPVVDPKIEKKEK 112
              G  +P  +P  E++++
Sbjct: 94  SFQGKNIPEKNPAREERKR 112


>gi|257438054|ref|ZP_05613809.1| DNA primase [Faecalibacterium prausnitzii A2-165]
 gi|257199714|gb|EEU97998.1| DNA primase [Faecalibacterium prausnitzii A2-165]
          Length = 173

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
            Y+CF C   GD + F +AL G    E+  +LA   G+   
Sbjct: 6   RYHCFGCGADGDVIDFTAALYGLGKKEAAVQLAQDFGLSYE 46


>gi|150010083|ref|YP_001304826.1| DNA primase [Parabacteroides distasonis ATCC 8503]
 gi|149938507|gb|ABR45204.1| DNA primase [Parabacteroides distasonis ATCC 8503]
          Length = 312

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I++    I I++ +    Y    ++         W   PF +E   SF  N  +  ++ +
Sbjct: 3  IQEAKQ-IRIADYLQSLGYTPVKQQGN-----SLWYKSPFREETEASFKVNTDRNLWFDY 56

Query: 66 SCHVKGDHL 74
               G+ +
Sbjct: 57 GLGKGGNII 65


>gi|256005292|ref|ZP_05430258.1| Helix-turn-helix type 11 domain protein [Clostridium thermocellum
           DSM 2360]
 gi|255990728|gb|EEU00844.1| Helix-turn-helix type 11 domain protein [Clostridium thermocellum
           DSM 2360]
 gi|316939537|gb|ADU73571.1| regulatory protein DeoR [Clostridium thermocellum DSM 1313]
          Length = 675

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 53/388 (13%), Positives = 91/388 (23%), Gaps = 64/388 (16%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102
           C +HD++ PS   N   GFY C  C        FL  +               AG+    
Sbjct: 45  CLYHDDRKPSATVNVKSGFYVCHVCG-SFSPYRFLVEI---------------AGIAPED 88

Query: 103 VDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162
                        +L    E    +                  +       I+  K    
Sbjct: 89  ASYF---INDYLRELYVKDERTGSYLRAFPHYDPSHTYIPTPGQEEEFEEFIKEAKARLR 145

Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222
           P+          +    E         +  D  A   +             RG++ A  G
Sbjct: 146 PELPIVQEYITARGIKYEMLERFEWGYVPHDEEAGQVECL-----VVPFRVRGKIRAIRG 200

Query: 223 RTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD 282
           R                             GA+   + S+         S  ++VEG  D
Sbjct: 201 RAYD-----------------------GRKGAVKNSRFSLWNLDSLEGKSQAVIVEGESD 237

Query: 283 VL----SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLV 338
            L    +L   GV   V S+       + +  ++    I L    DD        A+ ++
Sbjct: 238 ALRTIQALEACGVDIPVVSVPGNNFRKEWKREFEGIRTIYLIPQDDDASANFVRSALAVL 297

Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398
                    + +     G+D   ++                   D               
Sbjct: 298 GEERCKVVELPWKRGDVGKDICEWLTRNN-------------HTDQELVELIPLEEHQDR 344

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQ 426
             R      L        D  ++   ++
Sbjct: 345 FSRYYRVEELLKREPAEPDWLVKGMIAR 372


>gi|111020417|ref|YP_703389.1| replicative DNA helicase [Rhodococcus jostii RHA1]
 gi|110819947|gb|ABG95231.1| replicative DNA helicase [Rhodococcus jostii RHA1]
          Length = 469

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 54/178 (30%), Gaps = 15/178 (8%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
               + P     +     G+   +    E ++L  ++     + +  + L    +     
Sbjct: 13  RGRSEYPGPPDAEPGEEFGRQPPQDMAAEQSVLGGMLLSKDAIADVLEVLRPGDFYRPAH 72

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           Q ++  +   +   +   P  +   L  RG      +L R      L + T         
Sbjct: 73  QSVYDVILDLYSRGEPADPVTVSAELDRRG------ELRRIGGAPYLVTLTQTVPTAANA 126

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628
             Y + +A     + + R+  +   +I Q        +  AE      + + EV  + 
Sbjct: 127 GYYAEIVA----EKAILRRLVDAGTRIVQYGYTGADGQDVAEVVDRAQAEIFEVTERR 180


>gi|78043236|ref|YP_358913.1| replicative DNA helicase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995351|gb|ABB14250.1| replicative DNA helicase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 443

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 50/131 (38%), Gaps = 8/131 (6%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L T++++   L +  + L    +     + L+  +     + +      + + L 
Sbjct: 14  AEQAVLGTILSNGESLYKVIEILKPEDFYRESHKLLYQVMLELNEKGEPITILTVTEALK 73

Query: 543 ERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           ++G  E       +  L          +  + A I++ +   +  + L ++ + LS  ++
Sbjct: 74  QKGDLERAGGVSYIASLLAMAVPEA--TLESHAEIIEEKAVLRHLIDLSEKIKRLSYTEK 131

Query: 597 EIEKQIAQVTA 607
           + E  + +   
Sbjct: 132 DAESILEEAER 142


>gi|301311831|ref|ZP_07217753.1| putative transposon-related/mobilization protein [Bacteroides sp.
           20_3]
 gi|300829933|gb|EFK60581.1| putative transposon-related/mobilization protein [Bacteroides sp.
           20_3]
          Length = 333

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA------ 96
            P   + TPSF  +     +  F     G  +  +    GC+   ++ RL          
Sbjct: 34  SPLRQDDTPSFKVDYGVNLWCDFGTGEGGSLIDLVMKQYGCNAYGAISRLEQDYYSANTF 93

Query: 97  ---GVPLPVVDPKIEKKEK 112
              G  +P  +P  E++++
Sbjct: 94  SFQGKNIPEKNPAREERKR 112


>gi|290474581|ref|YP_003467461.1| replicative DNA helicase [Xenorhabdus bovienii SS-2004]
 gi|289173894|emb|CBJ80681.1| replicative DNA helicase [Xenorhabdus bovienii SS-2004]
          Length = 459

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 58/172 (33%), Gaps = 13/172 (7%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            + +   +  E  +L  L+          Q L    +     + ++  +     +   F 
Sbjct: 12  SEEAPSYAYAEVGVLGGLVLENERWDSVVQLLVADDFYFPAHRIIFQAIAELSEKNCPFD 71

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +  RL +RG      Q+DR    A +             + Y + +A   R R L  
Sbjct: 72  LITLTDRLTQRG------QIDRACGFAYVAEVCKNTPSAANIEEYARIVAEKSRLRQLLA 125

Query: 594 QKEEIEKQIAQVTAKGE---AEKTAILISILHE----VHIQIHQIESQEAMI 638
             + +   + Q   + +    +  + L ++  +     H ++  ++  +++I
Sbjct: 126 LGKSLSADVFQPNIQSDTLIEQAESQLFNLAEKGSTRQHQEMTLLQGADSLI 177


>gi|290476348|ref|YP_003469252.1| replicative DNA helicase; chromosome replication; chain elongation
           [Xenorhabdus bovienii SS-2004]
 gi|289175685|emb|CBJ82488.1| replicative DNA helicase; chromosome replication; chain elongation
           [Xenorhabdus bovienii SS-2004]
          Length = 458

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 58/172 (33%), Gaps = 13/172 (7%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            + +   +  E  +L  L+          Q L    +     + ++  +     +   F 
Sbjct: 12  SEEAPSYAYAEVGVLGGLVLENERWDSVVQLLVADDFYFPAHRIIFQAIAELSEKNCPFD 71

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +  RL +RG      Q+DR    A +             + Y + +A   R R L  
Sbjct: 72  LITLTDRLTQRG------QIDRACGFAYVAEVCKNTPSAANIEEYARIVAEKSRLRQLLA 125

Query: 594 QKEEIEKQIAQVTAKGE---AEKTAILISILHE----VHIQIHQIESQEAMI 638
             + +   + Q   + +    +  + L ++  +     H ++  ++  +++I
Sbjct: 126 LGKSLSADVFQPNIQSDTLIEQAESQLFNLAEKGSTRQHQEMTLLQGADSLI 177


>gi|254773124|ref|ZP_05214640.1| replicative DNA helicase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 785

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 50/166 (30%), Gaps = 15/166 (9%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             S   G+   +    E A+L  ++     + +  + L    +     Q ++  +   + 
Sbjct: 5   SPSEDFGRQPPQDLAAEQAVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYG 64

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
             +      +   L       LL+++        L S    A       GY   +     
Sbjct: 65  RGEPADAVTVAAELDR---RNLLRRIGGAPYLHTLISTVPTA----ANAGYYATIVA--- 114

Query: 588 FRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628
            + L R+  E   ++ Q           AE      + ++EV  + 
Sbjct: 115 EKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYEVAERR 160


>gi|149066032|gb|EDM15905.1| myosin, heavy polypeptide 9, non-muscle [Rattus norvegicus]
          Length = 1960

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 102/287 (35%), Gaps = 22/287 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                   +   EKL ++     +     E E        ++ ELE    +    +++++ 
Sbjct: 870  EMETMQSQLMAEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEE 929

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R  Y QA + ++QQ  Q+   +        +K    +       + ++   +  +     
Sbjct: 930  RCQYLQAEKKKMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCK 989

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFVE------QKY 531
              +E  LL         + E    L +    +  L KL      + +D  E      ++ 
Sbjct: 990  LAKEKKLLE------DRVAEFTTNLMEEEEKSKSLAKLKNKHEAMITDLEERLRREEKQR 1043

Query: 532  FLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
               E+  ++L        + + +L  Q+ +  +  A  E    +++    +      +  
Sbjct: 1044 QELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKE---EELQAALARVEEEAAQKN 1100

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
            +  ++  E+E QI+++    E+E+     +     ++  ++  ++++
Sbjct: 1101 MALKKIRELETQISELQEDLESERACRNKAEKQKRDLGEELEALKTE 1147



 Score = 38.3 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 70/227 (30%), Gaps = 15/227 (6%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            + ++ +    + +R+   +L  +            K     +D +       ++     K
Sbjct: 1579 QSEEKKKQLVRQVREMEAELEDERKQRSIAMAARKKLEMDLKDLEAHIDTANKNREEAIK 1638

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +K   +    +  L         + + LA  + +  +L+ + + +     E       
Sbjct: 1639 QLRKLQAQMKDCMREL---DDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERA 1695

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +   +   EL  ++        L           + Q  ++         L++ + 
Sbjct: 1696 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELINDRL 1752

Query: 596  EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIES 633
            ++   QI Q+      E++           L     E+  ++ ++ES
Sbjct: 1753 KKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKAKLQEMES 1799


>gi|118463867|ref|YP_879378.1| replicative DNA helicase [Mycobacterium avium 104]
 gi|12958160|gb|AAK09265.1| DnaB precursor [Mycobacterium avium]
 gi|118165154|gb|ABK66051.1| replicative DNA helicase [Mycobacterium avium 104]
          Length = 795

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 50/166 (30%), Gaps = 15/166 (9%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             S   G+   +    E A+L  ++     + +  + L    +     Q ++  +   + 
Sbjct: 15  SPSEDFGRQPPQDLAAEQAVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYG 74

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
             +      +   L       LL+++        L S    A       GY   +     
Sbjct: 75  RGEPADAVTVAAELDR---RNLLRRIGGAPYLHTLISTVPTA----ANAGYYATIVA--- 124

Query: 588 FRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628
            + L R+  E   ++ Q           AE      + ++EV  + 
Sbjct: 125 EKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYEVAERR 170


>gi|41406169|ref|NP_959005.1| hypothetical protein MAP0071 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394517|gb|AAS02388.1| DnaB [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 875

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 50/166 (30%), Gaps = 15/166 (9%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             S   G+   +    E A+L  ++     + +  + L    +     Q ++  +   + 
Sbjct: 15  SPSEDFGRQPPQDLAAEQAVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYG 74

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
             +      +   L       LL+++        L S    A       GY   +     
Sbjct: 75  RGEPADAVTVAAELDR---RNLLRRIGGAPYLHTLISTVPTA----ANAGYYATIVA--- 124

Query: 588 FRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628
            + L R+  E   ++ Q           AE      + ++EV  + 
Sbjct: 125 EKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYEVAERR 170


>gi|6981236|ref|NP_037326.1| myosin-9 [Rattus norvegicus]
 gi|13431671|sp|Q62812|MYH9_RAT RecName: Full=Myosin-9; AltName: Full=Cellular myosin heavy chain,
            type A; AltName: Full=Myosin heavy chain 9; AltName:
            Full=Myosin heavy chain, non-muscle IIa; AltName:
            Full=Non-muscle myosin heavy chain A; Short=NMMHC-A;
            AltName: Full=Non-muscle myosin heavy chain IIa;
            Short=NMMHC II-a; Short=NMMHC-IIA
 gi|967249|gb|AAA74950.1| nonmuscle myosin heavy chain-A [Rattus norvegicus]
          Length = 1961

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 102/287 (35%), Gaps = 22/287 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                   +   EKL ++           E E        ++ ELE    +    +++++ 
Sbjct: 870  EMETMQSQLMAEKLQLQEQLQAKTELCAEAEELRARLTAKKQELEEICHDLEARVEEEEE 929

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R  Y QA + ++QQ  Q+   +        +K    +       + ++   +  +     
Sbjct: 930  RCQYLQAEKKKMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCK 989

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFVE------QKY 531
              +E  LL         + E   +L +    +  L KL      + +D  E      ++ 
Sbjct: 990  LAKEKKLLE------DRVAEFTTDLMEEEEKSKSLAKLKNKHEAMITDLEERLRREEKQR 1043

Query: 532  FLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
               E+  ++L        + + +L  Q+ +  +  A  E    +++    +      +  
Sbjct: 1044 QELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKE---EELQAALARVEEEAAQKN 1100

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
            +  ++  E+E QI+++    E+E+     +     ++  ++  ++++
Sbjct: 1101 MALKKIRELETQISELQEDLESERACRNKAEKQKRDLGEELEALKTE 1147


>gi|312880251|ref|ZP_07740051.1| ATP-dependent chaperone ClpB [Aminomonas paucivorans DSM 12260]
 gi|310783542|gb|EFQ23940.1| ATP-dependent chaperone ClpB [Aminomonas paucivorans DSM 12260]
          Length = 872

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/199 (11%), Positives = 73/199 (36%), Gaps = 2/199 (1%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++ +I + +   R ++           +  +++    + ++     +++ AL+   + 
Sbjct: 322 EEYRTHIEKDAALERRFQPVLVEPPDVEDTVSILRGLKDRFQVHHGVRIQDNALVAAAVL 381

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +    ++ + + S   E    L   +   + E   G+   + 
Sbjct: 382 SQRYISDRFLPDKAIDLVDEACAQIRTEIDSMPAELDAALRRVMQLEIEEAALGKESDKA 441

Query: 554 DRQ-VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
            R+ +       A   +   +++  Y++        R L ++ EE  ++I Q     +  
Sbjct: 442 SRERLGQIRRELADQRSVADELQAQYEREKQAIAEVRALRKEIEETRRRIEQAERVYDLN 501

Query: 613 KTAIL-ISILHEVHIQIHQ 630
             A L    L E+  ++ +
Sbjct: 502 LAAQLRHGELPELEKKLRE 520


>gi|223985944|ref|ZP_03635980.1| hypothetical protein HOLDEFILI_03286 [Holdemania filiformis DSM
           12042]
 gi|223962131|gb|EEF66607.1| hypothetical protein HOLDEFILI_03286 [Holdemania filiformis DSM
           12042]
          Length = 633

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 42/144 (29%), Gaps = 30/144 (20%)

Query: 1   MNYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M Y ++ I        + + +  Q     R                H+    S     +K
Sbjct: 1   MYYTQEQIDRA-NQADLVSFLQSQGEQLIRAGNEYRWKR-------HN----SLTVRGNK 48

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL---------------AAIAGVPLPVVD 104
             +Y  S    G  + F+    G SF E+V+ L               A+ +   LP   
Sbjct: 49  --WYRHSQSKGGAPIDFVMEFYGKSFTEAVEMLTGEKGAAPPPDRPIPASFSDFRLPPRS 106

Query: 105 PKIEKKEKIQTDLIRLIEVATDFF 128
                     T   R+ E  + FF
Sbjct: 107 TDNRTARNYLTAARRIDEDVSGFF 130


>gi|75812657|ref|YP_320275.1| DnaB helicase [Anabaena variabilis ATCC 29413]
 gi|75705413|gb|ABA25086.1| DnaB helicase [Anabaena variabilis ATCC 29413]
          Length = 449

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 50/154 (32%), Gaps = 12/154 (7%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            KL  +    E A+L  ++  P  +      L    +  +  + ++        + K   
Sbjct: 11  NKLPPQNIEAEEAILGGILLDPDAISRVSDRLVPEAFYISAHKDIYQAAVRLHAQDKPTD 70

Query: 534 PEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANI-VDVRQGYQQAL 582
              +   L +R              L+ +    V    L     E  +  ++ +   + +
Sbjct: 71  LLSVTSWLTDRDLLFRIGGRNKLATLVDRTVSAVNIDALAVLVMEKYLRRELIKAGNEIV 130

Query: 583 AL-YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            L + +   +++Q E  E +I ++     A  + 
Sbjct: 131 HLAHDQEEEIAKQLETAESKILEINNSAIASTSQ 164


>gi|302669056|ref|YP_003832881.1| hypothetical protein bpr_II362 [Butyrivibrio proteoclasticus
          B316]
 gi|302397396|gb|ADL36299.1| hypothetical protein bpr_II362 [Butyrivibrio proteoclasticus
          B316]
          Length = 255

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 6  DFIKDLLIHIPISN---LIGQYVDWDRRKTNAVKGDYWACCPFHDEKT-PSFHCNDSKGF 61
          ++ +++   +PI +   ++G  +++ R+ +           P H+++   S       G 
Sbjct: 5  EWKEEIKE-VPIEDCCEMLG--IEYRRQGSLLSIL---CPNPAHNDQHYGSCFI--KNGR 56

Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
          Y C++C   GD++  +  +   S+ E+   +A  A +P
Sbjct: 57 YTCYACGDHGDNIKLVQNVKMMSYQEATHMIARYANIP 94


>gi|308373875|ref|ZP_07433957.2| replicative DNA helicase [Mycobacterium tuberculosis SUMu006]
 gi|308343945|gb|EFP32796.1| replicative DNA helicase [Mycobacterium tuberculosis SUMu006]
          Length = 864

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 52/169 (30%), Gaps = 16/169 (9%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             S   G+   +    E ++L  ++     + +  + L    +     Q ++  +   + 
Sbjct: 5   PPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYG 64

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
             +      +   L  RG   LL+++        L S    A             A    
Sbjct: 65  RGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AGYYASIVA 114

Query: 588 FRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630
            + L R+  E   ++ Q           AE      + +++V   ++ +
Sbjct: 115 EKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 163


>gi|294995674|ref|ZP_06801365.1| replicative DNA helicase [Mycobacterium tuberculosis 210]
          Length = 534

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 52/169 (30%), Gaps = 16/169 (9%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             S   G+   +    E ++L  ++     + +  + L    +     Q ++  +   + 
Sbjct: 5   PPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYG 64

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
             +      +   L  RG   LL+++        L S    A             A    
Sbjct: 65  RGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AGYYASIVA 114

Query: 588 FRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630
            + L R+  E   ++ Q           AE      + +++V   ++ +
Sbjct: 115 EKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 163


>gi|170288201|ref|YP_001738439.1| hypothetical protein TRQ2_0400 [Thermotoga sp. RQ2]
 gi|170175704|gb|ACB08756.1| conserved hypothetical protein [Thermotoga sp. RQ2]
          Length = 758

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 89/265 (33%), Gaps = 17/265 (6%)

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-QAIRDRLQQ 434
               P     +    E         +  L+  L +  + I +         + +   L +
Sbjct: 55  ENYRPWFSNRFGGYLETSEGRVEFGQGRLDPELFSFTSFISEGVDNTLNGSKKVASFLME 114

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
            ++               N         ++ L        +  +    +  +LLL L   
Sbjct: 115 SYRNRPEAVELERIL---NEDFSVLMKKTKELEAEISNLKERVEAWKEKRRSLLLVLKRK 171

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             + ++  ++           ++L       F  +K      I  R+ E      L +++
Sbjct: 172 KELSRDLQEK-----------RRLLEEEIDRFESEKSERLSSIEARINE--MKAELLRVE 218

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +++ +    +A +E  + +  +  Q+   L +R + L ++ E +E++      + +    
Sbjct: 219 KELEEIERKTAVSEEKVREAIEIAQKLDYLRERGKELEKEIESLEEKSKDTEERLKTIMK 278

Query: 615 AILISILHEVHIQIHQIESQEAMIE 639
              +S L E+ +++  ++ Q  ++E
Sbjct: 279 DFSVSSLEELKLKLENMKLQIELVE 303



 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 72/207 (34%), Gaps = 16/207 (7%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            +R +L +L  + +   +      ++  +   +   +  +     ++  L  +   +   
Sbjct: 398 RLRRKLFELESELMNLSTQKRSLIERKNQIVSKLKETAGVDNIEELEKFLRDQIVKKVFE 457

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--RLCER 544
            +  L  + +  ++  + + +      EL  L S +    +  K    EE+ +  R  E 
Sbjct: 458 RIPFLSKYGSEPRKAVENVEEQM---RELLILKSSV-EASLSAKKKNLEELQEYSREQEE 513

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                LK++             +E  +  +R   ++   L K    L ++     K+  +
Sbjct: 514 VLKNTLKEI----------GVDSEDELKVLRDLLERRANLRKTRDSLEKEIANFMKEKEE 563

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQI 631
           + +     +   L   + ++  ++ ++
Sbjct: 564 IESSRSNARIEELKREVEQIESELEKL 590


>gi|269122498|ref|YP_003310675.1| TOPRIM domain protein [Sebaldella termitidis ATCC 33386]
 gi|268616376|gb|ACZ10744.1| TOPRIM domain protein [Sebaldella termitidis ATCC 33386]
          Length = 607

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 64/403 (15%), Positives = 123/403 (30%), Gaps = 94/403 (23%)

Query: 16  PISNLIGQYV-DWDRRKTNAVKGDYWACCPFHD-EKTPSFHCNDSKGFYYCF--SCHVKG 71
            I + I +++ ++  +   AV       CPF   +K   F+ N   G Y CF  SC  KG
Sbjct: 2   NIEDFIKEHLGEYRIKGKEAVIR----ICPFCGRDKN-KFYMNIETGLYNCFSGSCGEKG 56

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHS 131
                            ++ L    G+   V    +EK E   T+ I L           
Sbjct: 57  T----------------IETLMKHLGINQKVKKKPVEKSEIRNTEKIELNRE-------- 92

Query: 132 LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191
                               +   +  L           E L  +G S E   E  + + 
Sbjct: 93  --------------------NYSSIGVLKENKIISKKQAEFLENRGISWETAAEMDVWVR 132

Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNF 251
                       +  +  I  ++ +V+A   R ++K +     +     LF+  +     
Sbjct: 133 R----------SDGWLTFIYRNKKRVLAVKYRDINKKDFRLTKSEDINPLFNIHRV---- 178

Query: 252 FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL---- 307
                             +   +I+ EG MDVL+  + G+++   S+             
Sbjct: 179 ------------------TGESVIICEGEMDVLACAEVGMKDKAVSVPNGTNNLGWIEYN 220

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
               +    I+L FD D  G +A  + +  +        +  ++ +   +D +  +   G
Sbjct: 221 WDFLESKKEIILAFDNDTAGEKAIKEVLKRLDI-----TKCRYLDMKGEKDLNDILINLG 275

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
           K     ++   L       +  T  +      E    E+   +
Sbjct: 276 KVELLNILNNPLEFEIEGLQDITNEKMDTGSTEAIFFEMESLD 318


>gi|301312478|ref|ZP_07218392.1| DNA primase [Bacteroides sp. 20_3]
 gi|300829544|gb|EFK60200.1| DNA primase [Bacteroides sp. 20_3]
          Length = 287

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80
          W   PF  EK  SF  +  K  +Y F     GD ++    +
Sbjct: 31 WYKSPFRTEKEASFKVDLHKELWYDFGLGKGGDIITLAKEI 71


>gi|256086973|ref|XP_002579656.1| myosin heavy chain [Schistosoma mansoni]
 gi|238665124|emb|CAZ35895.1| myosin heavy chain, putative [Schistosoma mansoni]
          Length = 1193

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 29/258 (11%)

Query: 400  ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
            +R ++E  +K     + D++ +      ++ ++    ++   +        +K  + +  
Sbjct: 888  QRGDMEQRIKELEERLADEEDQAANLTEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 947

Query: 460  KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
            K    R +QS + +         ++   L          +   + L       N L KL 
Sbjct: 948  KDNQIRTLQSEMAQQDEMIGKLNKDKKNLE------EQNKRTQEALQAEEDKVNHLNKLK 1001

Query: 520  SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568
            + L S   E +             E+  ++L    +   E +  L+R  RD        E
Sbjct: 1002 AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQLRRKE 1061

Query: 569  ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT---------AILIS 619
            A I  +   ++    L  +   L R+ +E++ +I ++    EAE+            L S
Sbjct: 1062 AEIGGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 1118

Query: 620  ILHEVHIQIHQIESQEAM 637
             L EV  ++ + +   A 
Sbjct: 1119 ELEEVVDRLEEQDGATAA 1136


>gi|301062051|ref|ZP_07202757.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300443846|gb|EFK07905.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 312

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 55/299 (18%), Positives = 94/299 (31%), Gaps = 44/299 (14%)

Query: 53  FHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107
            H + S+  +  FS    G  + F     L      +  E  + +    G+      PK 
Sbjct: 1   MHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMTMSEVARWMVKE-GIA-TANHPKS 58

Query: 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167
             K+K +                 L+    +        RGI +        G+ P    
Sbjct: 59  LVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR-----RGISATTCRYLGCGFLPRRS- 112

Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
                             + L                 L   I +  G+ ++       +
Sbjct: 113 -------------WAKTGSPLNSRLVFQVRGVRENGQGLQPVILTHTGRALSME----QE 155

Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
             + KY + P    F K   +YN    L          + + +   +IL EG+ DV  L 
Sbjct: 156 ELNGKYWSYP----FKKAWEIYNQDNIL-----LDEAALGQTNMFGLILTEGFFDVAKLV 206

Query: 288 QAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
           +AG +N V+ +G A++  Q+  L         PRI+L  D D  G   A +  + +  H
Sbjct: 207 EAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILLFLDRDPAGKTGALQVRERLFHH 265


>gi|229587750|ref|YP_002869869.1| hypothetical protein PFLU0174 [Pseudomonas fluorescens SBW25]
 gi|229359616|emb|CAY46458.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 962

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 10  DLLIHI--PISNLIGQYVDWDRRKTNAVKG-DYWACCPFHDEKTP-SFHCNDSKGFYYCF 65
           D+       I  ++  ++           G +Y A  P   +K   S   N SKG +  F
Sbjct: 16  DVKSAALKNIDRVLAHWLP---NGKLVDGGKEYTAPNPTRSDKRAGSLKINLSKGTWADF 72

Query: 66  SCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
           +     GD +  +  + G + +E+ ++LA +  V
Sbjct: 73  ATGDKGGDLIDLVRYIDGGTDVEACKKLADLLSV 106


>gi|225389811|ref|ZP_03759535.1| hypothetical protein CLOSTASPAR_03559 [Clostridium asparagiforme
           DSM 15981]
 gi|225044121|gb|EEG54367.1| hypothetical protein CLOSTASPAR_03559 [Clostridium asparagiforme
           DSM 15981]
          Length = 592

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 55/487 (11%), Positives = 124/487 (25%), Gaps = 61/487 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQ-YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           +YP +F         I +++   ++   R+++N+V  D    CPF  ++    + N  K 
Sbjct: 3   SYPDEF------PFNIMDVVELLHLRIRRQQSNSVYVD----CPFCGDRRGKMNVNFVKN 52

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA-----------IAGVPLPV------- 102
            + C  C   G  L   + L   +  ++   +A             +G   P        
Sbjct: 53  VWRCNYCGEHGGMLGLYARLNNTTTSDAYWEIAEALCDNCHEEHIRSGNEAPKLTVSTGS 112

Query: 103 -------------VDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGI 149
                           +    +  +     + +  +            +       +RG+
Sbjct: 113 SLSGARADAGCHSTSERKTVPQSEKASPAEIHQTLSLLLAQLTLRPAHREHLRS-PKRGL 171

Query: 150 DSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS-YDRFRNRLIF 208
               IE       P          R      +     G   D     T  + +  + ++ 
Sbjct: 172 SDEQIESLGFKSTPPPFLCRSITARLIKMGCKVEGVPGFYRDDCGYWTMAFYKKTSGILI 231

Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALN-YLQKSIRKDVR 267
           P     G++  F  + +         + PE          ++     +     S    V 
Sbjct: 232 PAVGFDGRLQGF--QIMLDVPLKDKDDPPEKAG--AKYIWFSSSSKRDGASSGSPVHLVG 287

Query: 268 RNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLW-----KLSPRIVLCFD 322
             S+  + ++EG +              +++  A     L  L+       +  I+   D
Sbjct: 288 DPSARVVYVIEGLLKADISHCLT-GRTFAAIAGANNTSPLDPLFALLAQSGTEEIIEAHD 346

Query: 323 GDDPGLRAAYKAI-DLVLCHLIPGNRVNFVLLSRG----EDPDSFIRCYGKTAFEKLIVE 377
            D    +        + L     G     +  +      +D    +R   +   E     
Sbjct: 347 MDKYNNQMTMAGASKIYLTARKYGMNCRRLTWNPNYKGFDDWQLALRRENQRRKELERKT 406

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
                   W             +              +  +     + +  R+ L  L +
Sbjct: 407 FKEQYLNGWCELAHIEDCTEQWQHRAESNIGLTEYLGLTRE-EHETFLRHGREALGVLLE 465

Query: 438 KYITEHS 444
                  
Sbjct: 466 PQRRSQR 472


>gi|215448333|ref|ZP_03435085.1| replicative DNA helicase [Mycobacterium tuberculosis T85]
          Length = 451

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 52/169 (30%), Gaps = 16/169 (9%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             S   G+   +    E ++L  ++     + +  + L    +     Q ++  +   + 
Sbjct: 5   PPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYG 64

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
             +      +   L  RG   LL+++        L S    A             A    
Sbjct: 65  RGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AGYYASIVA 114

Query: 588 FRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630
            + L R+  E   ++ Q           AE      + +++V   ++ +
Sbjct: 115 EKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 163


>gi|83745772|ref|ZP_00942829.1| hypothetical protein RRSL_04435 [Ralstonia solanacearum UW551]
 gi|207743687|ref|YP_002260079.1| hypothetical protein RSIPO_01871 [Ralstonia solanacearum IPO1609]
 gi|83727462|gb|EAP74583.1| hypothetical protein RRSL_04435 [Ralstonia solanacearum UW551]
 gi|206595086|emb|CAQ62013.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 932

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/397 (11%), Positives = 102/397 (25%), Gaps = 34/397 (8%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
             L   I + +L    ++  R              P H ++  S    +    +  +S  
Sbjct: 14  DQLKRDIDLHDL-ADRLNLRRSGAKGNYH-----SPHHTDRGASLSIFERGRAWKDWSAE 67

Query: 69  VKGDHLSFLSAL--LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI----RLIE 122
             G  +  +        + +E+ + L    G+P+P          K   + I    +   
Sbjct: 68  AGGSCIDLVQHCLPDVATPMEAAKLLGHWYGIPMPAAPASALLARKSTEEYIAERAQANP 127

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182
                +  S +   +      +    +  +A    K+                +     +
Sbjct: 128 EPAVAYLAS-RGIDEAVSRRAIQAGTLGWNAWNSPKVPAGEAGHGGPAAAFIVRAMDSAR 186

Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242
           ++   L         +                G       R L    +V  + SP   L 
Sbjct: 187 VVAVDLRYADPALNGNVKTQCQG------DKLGHGWTSDARRLRHAHTVYIVESPINALS 240

Query: 243 HKGKNLYN--FFGALNYLQKSIRKDVRRNSSSFIILVEGYMD-----------VLSLCQA 289
            +  +L N     AL  +    + D        +++   + D           + +  + 
Sbjct: 241 VECCHLPNGVAVFALRGIANVDKIDWSFLRGKRVVIALDHTDPVNERTGQRPGLAAAWKL 300

Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG--NR 347
                 + +G+ L + Q     +    ++      +   R       L+      G    
Sbjct: 301 SEALTAADIGSMLVDMQDWEEGEDINDVLQTHGAGELTARMRRLEAWLIPGMPGGGERLA 360

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
               +     D   + R   K  F + + +     D 
Sbjct: 361 GTRRVFLPPHDFGIYWRFRVKEDFTQYVQKFKDADDE 397


>gi|159026800|emb|CAO86645.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 692

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 83/221 (37%), Gaps = 16/221 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R +++          +  +++    + ++     + + AL+   +   
Sbjct: 141 YRKYIEKDAALERRFQEVLVDEPNVVDTISILRGLKERYEVHHGVKIADNALVAAALLSN 200

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI---HQRLC-----ERGFG 547
             + +++     I   +    KL   + S   E      + +    +RL      +    
Sbjct: 201 RYISDRFLPDKAIDLVDEAAAKLKMEITSKPEELDEIDRKILQLEMERLSLQREYDPASR 260

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E L++L++++ +     +        +   +Q    +  + R +    E++  +I Q   
Sbjct: 261 ERLEKLEKELANLKEEQSG-------LNAQWQGEKEIIDKVRGVKEAIEQVNLEIQQAER 313

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
             +  + A L    L ++  Q+  +E+Q A  +  GK   R
Sbjct: 314 DYDYNRAAELKFGKLTDLQRQMSALETQLADKQTTGKSLLR 354


>gi|154147933|ref|YP_001405763.1| hypothetical protein CHAB381_0154 [Campylobacter hominis ATCC
           BAA-381]
 gi|153803942|gb|ABS50949.1| hypothetical protein CHAB381_0154 [Campylobacter hominis ATCC
           BAA-381]
          Length = 335

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 89/324 (27%), Gaps = 46/324 (14%)

Query: 47  DEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK 106
           DE TPS   N   G    F     GD + FL         ++ ++++++  +        
Sbjct: 29  DEHTPSASINPKDGKIKDFGSGWYGDIVDFLVEFHNYQQKDAFRKISSMLNLNTDNSFTN 88

Query: 107 IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSR 166
            +  E I+ +                    +  + +Y+ +  ID+   E  +        
Sbjct: 89  FKSYENIKKE--------------------NSSMPHYISQSIIDNFQKERKENFSRFWEL 128

Query: 167 YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
            S       K    E   +  +          Y +  +RLI PI+   G  + F      
Sbjct: 129 LSQTMPTANKEQKREIAKKYEIG---------YSKKADRLIMPIKDENGNCLTF----WK 175

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV-LS 285
              +       +  +    K +++       L      +    ++  I ++EG  D   +
Sbjct: 176 YNPTPTPFIGSDGGVIQLPKVMFSKNRQR-TLFDIKNLEKFSKNNEPIFILEGEKDCLNA 234

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDG-----------DDPGLRAAYKA 334
           L        + S    +    L         I   FD            D  G+    + 
Sbjct: 235 LANGFNAITLGSATQNIDNKFLNYFKDKYVVIAYDFDESGKNGSKILEKDLKGITKKTEI 294

Query: 335 IDLVLCHLIPGNRVNFVLLSRGED 358
           ID        G            D
Sbjct: 295 IDWEKIAKKLGFTDKLKKGFDFTD 318


>gi|67920334|ref|ZP_00513854.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501]
 gi|67857818|gb|EAM53057.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501]
          Length = 941

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 62/187 (33%), Gaps = 15/187 (8%)

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
           +   L  +    E ++L  ++  P  +      ++   +     ++++      + + + 
Sbjct: 3   ISQALPPQNIEAEESILGGILLDPEAMGRVVDLISPEAFYVQSHKEIYQAALRLYGQGEP 62

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN-----------IVDVRQGYQQ 580
                +   L +    E +  L++  +      +    +              +     +
Sbjct: 63  TDFLTVKSTLEDYNLLEQVGGLNKLTQLLDRTVSAVNIDRYAALVMDKYLRRQLISAGHE 122

Query: 581 ALAL-YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            + L ++  + L    +E EK+I  +T K   E    L   + +   ++ ++  Q  +  
Sbjct: 123 IVDLGFETSQQLEIVLDESEKKIFALTQKRPQEGLIPLSDTIIKTFNELEKLHEQTTLP- 181

Query: 640 GFGKMSG 646
             G  SG
Sbjct: 182 --GIESG 186


>gi|206890471|ref|YP_002248184.1| replicative DNA helicase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742409|gb|ACI21466.1| replicative DNA helicase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 460

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 63/184 (34%), Gaps = 14/184 (7%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L  +    E A+L  +I     + +  + ++   + +   +K++  +   F + +    
Sbjct: 13  RLPPQSLEAEQAVLGAIILEGESITKAIEIISPEDFYSERHRKIYQAMLELFDKNEPIDL 72

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-----R 589
             + + L ++G  E    L      A +   +            +  L    R       
Sbjct: 73  ITLTEHLKDKGELEETGGLGYLSNLATVVPTSANIRYHAKLIREKALLRSVIRACTEIVT 132

Query: 590 LLSRQKEEIEKQIAQVTA---KGEAEKTAILISILHEVHIQ----IHQIESQEAMIEGFG 642
            +  + E+ E+ I        +   ++T      + +V  Q    I  +  ++A+I   G
Sbjct: 133 KVYEEPEDAEEMIDYAERLIFEISEKRTNTSFYNMKDVVKQTFKIIESMYEKKAVIT--G 190

Query: 643 KMSG 646
             SG
Sbjct: 191 VSSG 194


>gi|15602277|ref|NP_245349.1| replicative DNA helicase [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|20137939|sp|Q9CNL6|DNAB_PASMU RecName: Full=Replicative DNA helicase
 gi|12720663|gb|AAK02496.1| DnaB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 467

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 45/128 (35%), Gaps = 8/128 (6%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
             + ++    L +G +       E ++L  ++ HPA        L    +     + ++ 
Sbjct: 3   KKNAQIPSKPLEQGIVPPHSLEAEQSVLGGILIHPAHWDSISDMLIADDFYLAAHRVIFQ 62

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDV 574
            + +   + K      +++ L E+   E       L +L +      + +  + A IV  
Sbjct: 63  EMENLLRQGKPIDLINLYEFLREKNLSEDVGGFAYLAELSK--NTPSVSNIVSYAAIVRD 120

Query: 575 RQGYQQAL 582
           R   +  +
Sbjct: 121 RAILRDLI 128


>gi|318057454|ref|ZP_07976177.1| AAA ATPase [Streptomyces sp. SA3_actG]
 gi|318076909|ref|ZP_07984241.1| AAA ATPase [Streptomyces sp. SA3_actF]
          Length = 504

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 13/140 (9%)

Query: 484 EAALLLTLIN--HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           E ALL   I+  H     E    +    +       LW  L     +Q+   P+ +   L
Sbjct: 30  ERALLAACIHDKHRREYDEAAAIITRDDFTVPAYAALWDVLGDQIRDQRPTDPDTLRVEL 89

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             RG      +L       G      ++      + + +A+    R R L     ++  +
Sbjct: 90  DRRG------ELRPFGPGGGHLHEIADSYSGGSAEYFAEAIRRTSRLRNLD----DLTTR 139

Query: 602 IAQVTAKG-EAEKTAILISI 620
           I      G + E+   LI+ 
Sbjct: 140 IKAGIHTGRDLEELEALITR 159


>gi|256389562|ref|YP_003111126.1| replicative DNA helicase [Catenulispora acidiphila DSM 44928]
 gi|256355788|gb|ACU69285.1| replicative DNA helicase [Catenulispora acidiphila DSM 44928]
          Length = 460

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 50/149 (33%), Gaps = 10/149 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +   +    E ++L  ++     + E  + +  I +     + ++  +   +   +   P
Sbjct: 20  RTPPQDIPAEQSVLGGMLLSKDAIAEVIEVIKAIDFYKPAHEAVFGAILELYGRGEPADP 79

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L ++G    + ++        L ++   A       GY   +    + R + R+
Sbjct: 80  VTVAALLTKKGD---INRIGGAPYLHTLINSVPTA----ANAGYYAEI---VKERAVLRR 129

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHE 623
             E   +I Q+    +      ++    +
Sbjct: 130 LVEAGTRIVQMGYSTDGSDVEQIVDAAQQ 158


>gi|330501638|ref|YP_004378507.1| replicative DNA helicase [Pseudomonas mendocina NK-01]
 gi|328915924|gb|AEB56755.1| replicative DNA helicase [Pseudomonas mendocina NK-01]
          Length = 464

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 54/156 (34%), Gaps = 10/156 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K+       E A+L  L+      +     ++D+ +  ++ + ++  +F      + F  
Sbjct: 18  KVPPHSIEAEQAVLGGLMLDNNAWERVLDGVSDVDFYRHDHRLIFRAIFKLAERNEPFDV 77

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + ++L + G      QL +    A L         V   + Y Q +    R R   R+
Sbjct: 78  VTLSEQLDKEG------QLSQVGGLAYLAELAKNTPSVANIKAYAQII----RERATLRK 127

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
              I  +IA      E      ++     +  QI +
Sbjct: 128 LISISNEIADSAYAPEGRTGEEILDEAERLIFQIAE 163


>gi|321156869|emb|CBW38856.1| putative uncharacterized protein [Streptococcus pneumoniae]
          Length = 361

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 45/112 (40%), Gaps = 18/112 (16%)

Query: 8   IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
           I++    I I ++  +  + + +  ++  +       P HD    SF    +   +  FS
Sbjct: 3   IEECKQ-ISILDVASRLGISFKQVSSSVYEH------PEHD----SFRIFSTTNTFKWFS 51

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
             ++GD + F+  + G SF E++  L+            +  ++++ +    
Sbjct: 52  RDIQGDVIDFVRLVKGISFKEALVFLSE------EPFQKEAVQEKRERPFYY 97


>gi|325192663|emb|CCA27084.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 1064

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 74/234 (31%), Gaps = 32/234 (13%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           R+ L    ++   +              R+++   ++L+ +   K +      + E  LL
Sbjct: 388 REGLLAGTRQTWADQGNNLEEKMGIVGRREEEAMPRQLITAEEGKDQHGNGMRILEDRLL 447

Query: 489 LTLINHPAILQEQYQ-ELADIR---YDNNELQKLWSFLFSDFVEQKYFLPEEIHQR-LCE 543
             +  +  + +E  + +LA          +L+KL         E +    + + ++   +
Sbjct: 448 GIMNQNERLRRENEKFQLAMEESTQLTQTQLEKLRQHYLEVMEETQELNRKLVIEKDYFQ 507

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE---- 599
                L  +LD   R   + +A  E    +  +  QQ + L  +   L+++ +++     
Sbjct: 508 NKLEILAGELDEACRRNEIGTAKLEETHANAEEIIQQNVELTTKNTYLTQEVDDLRDDLD 567

Query: 600 -----------------------KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
                                  + I +   +        L   L  V  + + 
Sbjct: 568 TATKALESHAELAEKEGDLRKKSEAIQESLERENIAIRDELTKELESVKKEKNA 621



 Score = 45.6 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 81/245 (33%), Gaps = 8/245 (3%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           D   +             D + +    Q   +R     +  +T+     +  K     R 
Sbjct: 567 DTATKALESHAELAEKEGDLRKKSEAIQESLERENIAIRDELTKELESVKKEKNATITRF 626

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE---- 514
           Q+  +    + + V  +  +     EA L  +L    A++QE    L++I     E    
Sbjct: 627 QQERNAVTEKLNEVSIQNEEHRWRSEA-LQTSLSKSDALVQELEAHLSEISVAKAEVETQ 685

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
           L +    L            E +           +++   R+   A       EAN+  +
Sbjct: 686 LSETKKSLSEKLAFATRLQTEHMGIAGKHAEQAAIIENALREAATANNAKRDAEANLEVL 745

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+   +   L+ R   L RQK + E ++  +  +   +   +       +  +  +++ +
Sbjct: 746 RETMNEV--LHDRDEAL-RQKRQAEDEMEALKRRLSDQLIEVAQQHQIAMENEKKKMQIE 802

Query: 635 EAMIE 639
            A IE
Sbjct: 803 IARIE 807


>gi|34496096|ref|NP_900311.1| hypothetical protein CV_0641 [Chromobacterium violaceum ATCC 12472]
 gi|34101950|gb|AAQ58317.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 933

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 13/113 (11%)

Query: 9   KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
             L   I + +L  + +D  R+             P H + + S         +  +S  
Sbjct: 30  DQLKDSIDLYDLAAR-LDLKRQGKGNYH------SPHHPDSSASLSIFADGRGWKDWSGD 82

Query: 69  VKGDHLSFLS----ALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117
             G  +  L      L   + + + + L    G+P P    K       ++ L
Sbjct: 83  AGGSCIDLLRYCRPELD--TPLAAARLLGDWYGMPQPKPAMKERAAPARKSTL 133


>gi|74203133|dbj|BAE26252.1| unnamed protein product [Mus musculus]
          Length = 737

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 81/227 (35%), Gaps = 15/227 (6%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             +  +  +++R     A+   L +  +     H    +  +           S++  Q 
Sbjct: 509 PHLQSMPSEQIRNQ-LTAMSSVLAKALEVIRPAHILQEKEEQHQLAVNAYLKNSRKEHQR 567

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF-VE 528
            L + +  ++   R  +L               +E  ++     ELQK+          E
Sbjct: 568 ILARRQTIEERKERLESL------------NIQREKEELEQREAELQKVRKAEEERLRQE 615

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            K    E I Q   +     + ++L++  +      A  + +I D+ +       + K+ 
Sbjct: 616 AKEREKERILQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEE-LDPDFIMAKQV 674

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             L ++K+E+++++     K +  + A     L E   ++ ++E  E
Sbjct: 675 EQLEKEKKELQERLKNQEKKIDYFERAKREEELREYQERVKKLEEVE 721



 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    +R A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIRPAHILQEKEEQHQLAVNAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|154492814|ref|ZP_02032440.1| hypothetical protein PARMER_02453 [Parabacteroides merdae ATCC
          43184]
 gi|154087119|gb|EDN86164.1| hypothetical protein PARMER_02453 [Parabacteroides merdae ATCC
          43184]
          Length = 314

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 21 IGQYVD---WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL 77
          IG Y+     +  K       Y A  P+ ++   S   +  +  ++ +  +  G  +  +
Sbjct: 16 IGDYLHACGIEPAKRYNGYALYHA--PYREDHNASLKVDFRQNLWHDYGTNQGGSIIDLV 73

Query: 78 SALLGCSFIESVQRLAAI 95
            + GCS  +++  LA  
Sbjct: 74 MRMQGCSAYKAMAHLAER 91


>gi|260893964|ref|YP_003240061.1| replicative DNA helicase [Ammonifex degensii KC4]
 gi|260866105|gb|ACX53211.1| replicative DNA helicase [Ammonifex degensii KC4]
          Length = 441

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 45/151 (29%), Gaps = 9/151 (5%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
               +    E ALL ++   P  L      +    +     + ++  +     +      
Sbjct: 2   AQLPQNVSAEQALLGSIFLDPDQLARVEGLVRPEDFYEEAHRAIYEAMLELEDQGLPIDL 61

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L   G    L++       A L      A   +      +  AL +    ++ +
Sbjct: 62  ITVTEHLRREGK---LEKAGGAAYVASLVDVVPTAAHAEHYAKLVRDKALLRSLVEVATR 118

Query: 595 KEEIEKQIAQVTAKGEA-EKTAILISILHEV 624
             ++      +   G+A +  +     L E+
Sbjct: 119 IRDL-----GLEEAGDARQLLSEAERWLSEL 144


>gi|256086975|ref|XP_002579657.1| myosin heavy chain [Schistosoma mansoni]
 gi|238665125|emb|CAZ35896.1| myosin heavy chain [Schistosoma mansoni]
          Length = 1095

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 29/258 (11%)

Query: 400  ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
            +R ++E  +K     + D++ +      ++ ++    ++   +        +K  + +  
Sbjct: 790  QRGDMEQRIKELEERLADEEDQAANLTEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 849

Query: 460  KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
            K    R +QS + +         ++        N     +   + L       N L KL 
Sbjct: 850  KDNQIRTLQSEMAQQDEMIGKLNKDKK------NLEEQNKRTQEALQAEEDKVNHLNKLK 903

Query: 520  SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568
            + L S   E +             E+  ++L    +   E +  L+R  RD        E
Sbjct: 904  AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQLRRKE 963

Query: 569  ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT---------AILIS 619
            A I  +   ++    L  +   L R+ +E++ +I ++    EAE+            L S
Sbjct: 964  AEIGGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 1020

Query: 620  ILHEVHIQIHQIESQEAM 637
             L EV  ++ + +   A 
Sbjct: 1021 ELEEVVDRLEEQDGATAA 1038


>gi|289579508|ref|YP_003478135.1| replicative DNA helicase [Thermoanaerobacter italicus Ab9]
 gi|297545631|ref|YP_003677933.1| replicative DNA helicase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289529221|gb|ADD03573.1| replicative DNA helicase [Thermoanaerobacter italicus Ab9]
 gi|296843406|gb|ADH61922.1| replicative DNA helicase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 442

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 52/149 (34%), Gaps = 10/149 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K+  +    E ++L +++     + +  + L    +     +KL+  +   F +     
Sbjct: 4   SKIPPQNIEAEQSVLGSMLLSRDAIIDVSEILKAEDFYKESHKKLFDVMMEMFEKDIPVD 63

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +   L +R   E +  +D     +     T   +            A   + +   R
Sbjct: 64  LVTVVDELRKRNMLEAIGGIDYIASLSSNVITTANVS----------YYAKLIKEKATLR 113

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILH 622
           +  E   +I +++ +G+  +T + I+   
Sbjct: 114 RLIEASSEIMELSYEGDDVETVLDIAEQK 142


>gi|281411756|ref|YP_003345835.1| hypothetical protein Tnap_0317 [Thermotoga naphthophila RKU-10]
 gi|281372859|gb|ADA66421.1| conserved hypothetical protein [Thermotoga naphthophila RKU-10]
          Length = 758

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 90/265 (33%), Gaps = 17/265 (6%)

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-QAIRDRLQQ 434
               P     +    E         +  L+  L +  + I +         + +   L +
Sbjct: 55  ENYRPWFSNRFGGYLETSEGRVEFGQGRLDPELFSFTSFISEGVDNTLNGSKKVASFLME 114

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
            ++               N         ++ L        +  +    +  +LLL L   
Sbjct: 115 SYRNRPEAVELERIL---NEDFSVLMKKTKELEAEISNLKERVEAWKEKRRSLLLVLKRK 171

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             + ++  ++           ++L     + F  +K      I  R+ E      L +++
Sbjct: 172 KELSRDLQEK-----------RRLLEEEINRFESEKSERLSSIEARINE--MKAELLRVE 218

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +++ +    +A +E  + +  +  Q+   L +R + L ++ E +E++      + +    
Sbjct: 219 KELEEIERKTAVSEEKVREAIEIAQKLDYLRERGKELEKEIESLEEKSKDTEERLKTIMK 278

Query: 615 AILISILHEVHIQIHQIESQEAMIE 639
              +S L E+ +++  ++ Q  ++E
Sbjct: 279 DFSVSSLEELKLKLENMKLQIELVE 303



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 72/207 (34%), Gaps = 16/207 (7%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            +R +L +L  + +   +      ++  +   +   +  +     ++  L  +   +   
Sbjct: 398 RLRRKLFELESELMNLSTQKRSLIERKNQIVSKLKETAGVDNIEELEKFLRDQIVKKVFE 457

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--RLCER 544
            +  L  + +  ++  + + +      EL  L S +    +  K    EE+ +  R  E 
Sbjct: 458 RIPFLSKYGSEPRKAVENVEEQM---RELLILRSSV-EASLSAKKKNLEELQEYSREQEE 513

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                LK++             +E  +  +R   ++   L K    L ++     K+  +
Sbjct: 514 VLKNTLKEI----------GVDSEDELKVLRDLLERRANLRKTRDSLEKEIANFMKEKEE 563

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQI 631
           + +     +   L   + ++  ++ ++
Sbjct: 564 IESSRSNARIEELKREVEQIESELEKL 590


>gi|148269526|ref|YP_001243986.1| hypothetical protein Tpet_0384 [Thermotoga petrophila RKU-1]
 gi|147735070|gb|ABQ46410.1| hypothetical protein Tpet_0384 [Thermotoga petrophila RKU-1]
          Length = 758

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 90/265 (33%), Gaps = 17/265 (6%)

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-QAIRDRLQQ 434
               P     +    E         +  L+  L +  + I +         + +   L +
Sbjct: 55  ENYRPWFSNRFGGYLETSEGRVEFGQGRLDPELFSFTSFISEGVDNTLNGSKKVASFLME 114

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
            ++               N         ++ L        +  +    +  +LLL L   
Sbjct: 115 SYRNRPEAVELERIL---NEDFSVLMKKTKELEAEISNLKERVEAWKEKRRSLLLVLKRK 171

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             + ++  ++           ++L     + F  +K      I  R+ E      L +++
Sbjct: 172 KELSRDLQEK-----------RRLLEEEINRFESEKSERLSSIEARINE--MKAELLRVE 218

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +++ +    +A +E  + +  +  Q+   L +R + L ++ E +E++      + +    
Sbjct: 219 KELEEIERKTAVSEEKVREAIEIAQKLDYLRERGKELEKEIESLEEKSKDTEERLKTIMK 278

Query: 615 AILISILHEVHIQIHQIESQEAMIE 639
              +S L E+ +++  ++ Q  ++E
Sbjct: 279 DFSVSSLEELKLKLENMKLQIELVE 303



 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 72/207 (34%), Gaps = 16/207 (7%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            +R +L +L  + +   +      ++  +   +   +  +     ++  L  +   +   
Sbjct: 398 RLRRKLFELESELMNLSTQKRSLIERKNQIVSKLKETAGVDNIEELEKFLRDQIVKKVFE 457

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--RLCER 544
            +  L  + +  ++  + + +      EL  L S +    +  K    EE+ +  R  E 
Sbjct: 458 RIPFLSKYGSEPRKAVENVEEQM---RELLILKSSV-EASLSAKKKNLEELQEYSREQEE 513

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                LK++             +E  +  +R   ++   L K    L ++     K+  +
Sbjct: 514 VLKNTLKEI----------GVDSEDELKVLRDLLERRANLRKTRDSLEKEIANFMKEKEE 563

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQI 631
           + +     +   L   + ++  ++ ++
Sbjct: 564 IESSRSNARIEELKREVEQIESELEKL 590


>gi|121595501|ref|YP_987397.1| ATPase [Acidovorax sp. JS42]
 gi|120607581|gb|ABM43321.1| ATPase AAA-2 domain protein [Acidovorax sp. JS42]
          Length = 867

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 73/204 (35%), Gaps = 4/204 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++KYI + +   R ++K          +  +++   V+ +      + + A++    ++H
Sbjct: 317 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLQVRYEAHHGVDITDPAIVAAAELSH 376

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQL 553
             I      +   I   +    K+   + S            I  ++       E  +  
Sbjct: 377 RYITDRFLPD-KAIDLIDEAAAKIKIEIDSKPESMDKLERRMIQLKIEREAMKKETDEAS 435

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            ++++         E    D+ + ++   A  +    + +  + I  QI  +  KG+  K
Sbjct: 436 QKRLQLIEEELGNVEREYADLEEVWKAEKASAQGSEQIRKDIDAIRTQIDDLKRKGDFNK 495

Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636
            A L    L E+  ++ + +  EA
Sbjct: 496 VAELQYGTLPELEKRLKEAQDSEA 519


>gi|54027550|ref|YP_121792.1| replicative DNA helicase [Nocardia farcinica IFM 10152]
 gi|54019058|dbj|BAD60428.1| putative replicative DNA helicase [Nocardia farcinica IFM 10152]
          Length = 885

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 51/169 (30%), Gaps = 15/169 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                    G+        E ++L  ++     + +  + +    +     Q ++  +  
Sbjct: 13  PPEPPGEDFGRQPPHDMAAEQSVLGGMLLSKDAIADVVEVIRPGDFYRPAHQAIYDTILD 72

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
            +   +   P  +   L  RG      +L R      L + T           Y + +A 
Sbjct: 73  LYGRGEPADPVTVAAGLDRRG------ELKRIGGAPYLVTLTQTVPTAANAGYYAEIVA- 125

Query: 585 YKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628
               + + R+  E   +I Q        +  AE      + ++EV  + 
Sbjct: 126 ---EKAILRRLVEAGTRIVQYGYAGADGQDIAEVVDRAQAEVYEVTERR 171


>gi|330850830|ref|YP_004376580.1| DNA replication helicase [Fistulifera sp. JPCC DA0580]
 gi|328835650|dbj|BAK18946.1| DNA replication helicase [Fistulifera sp. JPCC DA0580]
          Length = 450

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 48/168 (28%), Gaps = 19/168 (11%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                   L E  +L +L+ +  +++     L+   +     Q+++  +           
Sbjct: 14  NNSLPNNFLAEQIILSSLLTNQDVIEATTSLLSVEAFYFKNHQEIYRAIIFMNKNNFPID 73

Query: 534 PEEIHQRLCERGFGE-------------------LLKQLDRQVRDAGLWSATTEANIVDV 574
              +   L   G  E                    L++    V D  L  +  +     V
Sbjct: 74  IITLINFLQTNGLLEKTGGSKVLIDLVSQRPNVTHLREYINLVNDKFLRRSIIKIGYEIV 133

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
              Y  ++ L +    L  +  + + Q+    +    E    + + L 
Sbjct: 134 NSSYTTSIPLTQILNELEEKIVDFKNQLLLSQSLDNVELLNSIFANLK 181


>gi|329960379|ref|ZP_08298804.1| hypothetical protein HMPREF9446_00363 [Bacteroides fluxus YIT
          12057]
 gi|328532817|gb|EGF59599.1| hypothetical protein HMPREF9446_00363 [Bacteroides fluxus YIT
          12057]
          Length = 316

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
          Y    ++  N      W   PF +E  PSF  N  +  ++ F     G+ +
Sbjct: 20 YSPVKQQGVNL-----WYKSPFREENEPSFKVNTEREQWFDFGLGKGGNII 65


>gi|326936457|ref|XP_003214270.1| PREDICTED: LOW QUALITY PROTEIN: myosin-XVIIIa-like [Meleagris
            gallopavo]
          Length = 1902

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 97/297 (32%), Gaps = 6/297 (2%)

Query: 346  NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
              +    L+   D D     +       +    +       ++E E++       + +LE
Sbjct: 1276 RLIRAAELNGELDDDDSGGEWRLKYERAVRE--IDFTKKRLQQELEDKLEVEQQGKRQLE 1333

Query: 406  IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              L +     ++ +      +    RL    Q       G         + + +      
Sbjct: 1334 RRLADLQADGEESQRALQQLKKKCQRLAAELQDTKLHLEGQQGRNHDLEKKQRRFDGELS 1393

Query: 466  LMQSSLVKGKLSKKPSLREAALL-LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                   + +L ++   RE  +L   + +   +L+++  ++A +      L+     + S
Sbjct: 1394 QAHEEAQRERLQREKLSREKDVLVAEVFSLKQLLEDKDADIAGLTQRAEALEAELQDI-S 1452

Query: 525  DFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +      ++  +L +      +  ++LD Q     +     ++    ++Q   Q  
Sbjct: 1453 CQESKDEASLAKVKXQLRDLEAKAKDQEEELDEQAGTIQMLEQIRQSCQKKLKQMEMQLE 1512

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              Y+  + + R+K E+E +++ V  +           +  ++      +   + M++
Sbjct: 1513 EEYEDKQKVLREKRELESKLSAVNDQANQRDFETEKRLRRDLKRTKALLADAQIMLD 1569



 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 73/187 (39%), Gaps = 21/187 (11%)

Query: 456  HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
             + +    ++L +    K ++  +    +  +   +  H A + +  ++LA +       
Sbjct: 1620 SKAKAALEEQLSRLQREKNEVQSRLEEDQEDMNELMKKHKAAVAQASRDLAQMN------ 1673

Query: 516  QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
              L + L     E      +E+ ++L   G    L+ L++ + D  L S   EA I ++ 
Sbjct: 1674 -DLQAQLEEVSKE-----KQELQEKLQ--GLQSQLEFLEQSMVDKSLVSRQ-EAKIRELE 1724

Query: 576  QGYQQALALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIH 629
               +      KR   L+ + +E  +++ +           E E+   L   L +V  ++ 
Sbjct: 1725 TRLEFERTQVKRLESLATRLKENMEKLTEERDQRAAAENREKEQNKRLQRQLRDVKEEMG 1784

Query: 630  QIESQEA 636
            ++  +EA
Sbjct: 1785 ELAKKEA 1791


>gi|302877963|ref|YP_003846527.1| hypothetical protein Galf_0724 [Gallionella capsiferriformans ES-2]
 gi|302580752|gb|ADL54763.1| hypothetical protein Galf_0724 [Gallionella capsiferriformans ES-2]
          Length = 115

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 22  GQYVDWD-RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV-KGDHLSFLSA 79
              +    ++          A C FHD+   S   N   G ++C +C    GD L+    
Sbjct: 43  SHGIQLKAKKGWA------MAKCTFHDDTHASLGINTESGGFFCHACGAKGGDVLAAHQL 96

Query: 80  LLGCSFIESVQRL 92
           + GC F+ S + L
Sbjct: 97  ITGCDFVTSAKVL 109


>gi|189184042|ref|YP_001937827.1| putative conjugative transfer protein TraI [Orientia tsutsugamushi
           str. Ikeda]
 gi|189184741|ref|YP_001938526.1| putative conjugative transfer protein TraI [Orientia tsutsugamushi
           str. Ikeda]
 gi|189180813|dbj|BAG40593.1| putative conjugative transfer protein TraI [Orientia tsutsugamushi
           str. Ikeda]
 gi|189181512|dbj|BAG41292.1| putative conjugative transfer protein TraI [Orientia tsutsugamushi
           str. Ikeda]
          Length = 890

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 105/356 (29%), Gaps = 31/356 (8%)

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-LPVVDPKIEKKEKIQTDLI 118
           G +Y FS    GD  S +    G SF ++ + L ++ G+  +     +  +    Q    
Sbjct: 338 GKWYDFSAGEGGDLFSLVQRERGYSFFDAKEYLKSVVGMSNISQRYQRQPRTNDSQQ--- 394

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
                    +    ++ +   +    +                   ++     +L  +G 
Sbjct: 395 ---------YIQQPESIKIANVQNLYERSSKIHGYEIDKNPHAEVVNK-----YLENRGI 440

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           + +K   +  L       T             R+++G++       L+     K   S  
Sbjct: 441 TFDKSTASSDLKASILFDTQTRENYPAFTAFARNAKGEITGVQAVYLNPETGYKADVSIN 500

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
              F K        G+   + K        N  +  I+ EG    LSL QAG++  + + 
Sbjct: 501 RRSFGK------ISGSFITIAKRN-----VNDPNITIIAEGAETALSLQQAGIKGNIIAS 549

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
                            +I++  D D          I       +       V      D
Sbjct: 550 AGISNLTNYSPF--PGEKIIIAADNDGKNSLTNNTVIKFAKILEMKEAITCIVKPQENGD 607

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            ++ ++  G  +   +I   +  +    +     ++ N   E+     ++K   N 
Sbjct: 608 FNNLLQTCGAQSIRDIIEPEITKLTKAVEATKLTQTENNSIEKQNDITNVKELYNK 663


>gi|255012232|ref|ZP_05284358.1| DNA primase [Bacteroides fragilis 3_1_12]
 gi|313150073|ref|ZP_07812266.1| DNA primase [Bacteroides fragilis 3_1_12]
 gi|313138841|gb|EFR56200.1| DNA primase [Bacteroides fragilis 3_1_12]
          Length = 321

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 21 IGQYVD-WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79
          I  Y+            G  W   PF  E   SF  N  +  ++ +     G+ ++    
Sbjct: 11 IADYLQSLGYSPVKQQSGSLWYKSPFRRETEASFKVNTDRNLWFDYGLGRGGNIITLAQE 70

Query: 80 LLGCSFI 86
          L G  ++
Sbjct: 71 LYGSDYV 77


>gi|331270937|ref|YP_004385648.1| putative DNA primase [Clostridium botulinum BKT015925]
 gi|329127329|gb|AEB77273.1| putative DNA primase [Clostridium botulinum BKT015925]
          Length = 357

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 90/281 (32%), Gaps = 40/281 (14%)

Query: 70  KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129
            GD  + +  L  C   E+++      G+    +    +  +  +         A   F+
Sbjct: 73  SGDVFTLIMELKQCKLSEAMKICCNAIGIKYYNIKTNPQNNKPKRK--------AFGGFY 124

Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL 189
           +S+K   +K       +   ++        G    ++ ++   ++ +       I   ++
Sbjct: 125 NSIKKQTNKLTSTIQLKAHNENILSNFINKGNLMFAKDNINYEIQTEFDIMYDFITDRIV 184

Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN-SPETIL----FHK 244
           +   +                    G++I   GR  S  E     N S    L    F K
Sbjct: 185 VPWRHHW-----------------TGEIIGIMGRYNSSAEYCTQHNISKWLPLKDLEFPK 227

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            + +Y  +    Y+ +  R          I + E    VL     GV+N  S     +++
Sbjct: 228 SQTIYGLYQNYKYILQQGR----------IYIGESEKFVLQAGSYGVRNTGSIGSHDISD 277

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
            Q  +L  L   IV C D D P      +   L+    + G
Sbjct: 278 VQREILLSLGVDIVTCMDNDIPDSFNTEQCKKLLTTSSLLG 318


>gi|222111721|ref|YP_002553985.1| ATP-dependent chaperone clpb [Acidovorax ebreus TPSY]
 gi|221731165|gb|ACM33985.1| ATP-dependent chaperone ClpB [Acidovorax ebreus TPSY]
          Length = 867

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 73/204 (35%), Gaps = 4/204 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++KYI + +   R ++K          +  +++   V+ +      + + A++    ++H
Sbjct: 317 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLQVRYEAHHGVDITDPAIVAAAELSH 376

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQL 553
             I      +   I   +    K+   + S            I  ++       E  +  
Sbjct: 377 RYITDRFLPD-KAIDLIDEAAAKIKIEIDSKPESMDKLERRMIQLKIEREAMKKETDEAS 435

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            ++++         E    D+ + ++   A  +    + +  + I  QI  +  KG+  K
Sbjct: 436 QKRLQLIEEELGNVEREYADLEEVWKAEKASAQGSEQIRKDIDAIRTQIDDLKRKGDFNK 495

Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636
            A L    L E+  ++ + +  EA
Sbjct: 496 VAELQYGTLPELEKRLKEAQDSEA 519


>gi|166368925|ref|YP_001661198.1| ClpB protein [Microcystis aeruginosa NIES-843]
 gi|166091298|dbj|BAG06006.1| ClpB protein [Microcystis aeruginosa NIES-843]
          Length = 872

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 83/221 (37%), Gaps = 16/221 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R +++          +  +++    + ++     + + AL+   +   
Sbjct: 321 YRKYIEKDAALERRFQEVLVDEPNVVDTISILRGLKERYEVHHGVKIADNALVAAALLSN 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI---HQRLC-----ERGFG 547
             + +++     I   +    KL   + S   E      + +    +RL      +    
Sbjct: 381 RYISDRFLPDKAIDLVDEAAAKLKMEITSKPEELDEIDRKILQLEMERLSLQREYDPASR 440

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E L++L++++ +     +        +   +Q    +  + R +    E++  +I Q   
Sbjct: 441 ERLEKLEKELANLKEEQSG-------LNAQWQGEKEIIDKVRGVKEAIEQVNLEIQQAER 493

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
             +  + A L    L ++  Q+  +E+Q A  +  GK   R
Sbjct: 494 DYDYNRAAELKFGKLTDLQRQMSALETQLADKQTTGKSLLR 534


>gi|326204916|ref|ZP_08194769.1| hypothetical protein Cpap_0175 [Clostridium papyrosolvens DSM 2782]
 gi|325984965|gb|EGD45808.1| hypothetical protein Cpap_0175 [Clostridium papyrosolvens DSM 2782]
          Length = 310

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 38/119 (31%), Gaps = 2/119 (1%)

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIES-VQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
             ++  S    G  + F+    G  F E+ V  L    G+        ++++E+ +  L 
Sbjct: 51  NRWFDHSTEKGGLAIDFVQKFYGLPFQEAVVLLLGGEKGIEFKQTGKSVDEQERNRFVLP 110

Query: 119 RLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
                    F + +K    D+ +  Y     +     +     +       +  H  ++
Sbjct: 111 EANSDMRRVFAYLIKQRFIDRNVLVYFAREKLLFEDAKYHNAVFVGLDENGVARHAHKR 169


>gi|145226771|gb|ABP48137.1| putative ATP-dependent Clp protease [Rhodococcus sp. DK17]
          Length = 877

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 74/218 (33%), Gaps = 16/218 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++K+I   +   R ++           +  +++    + ++     +++ AL+  + ++H
Sbjct: 326 YRKHIESDAALERRFQTVLVDEPSAEDAISILRGLRERLEVFHGVKIQDGALVAAVTLSH 385

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +    +L + + S   E      +     + E    +      
Sbjct: 386 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDELTRKVTRLEIEEAALSKETD--- 441

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                A L     E   +      + A   ++  R   R+ +E+  ++ ++  + E  + 
Sbjct: 442 -AASKARLEELRKELADLRAEADARHAQ--WEAERQAIRRVQELRGELERLRHEAEEAER 498

Query: 615 AILIS--------ILHEVHIQIHQIESQEAMIEGFGKM 644
              ++         + E+  ++   E Q A  +G   +
Sbjct: 499 NYDLNRAAELRYGEITELERRLEAAEEQLATRQGRNPL 536


>gi|295394874|ref|ZP_06805087.1| replicative DNA helicase DnaB [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972207|gb|EFG48069.1| replicative DNA helicase DnaB [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 458

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 51/171 (29%), Gaps = 18/171 (10%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +   +    E ++L +++     + +  + L    +     + ++  +   +   +    
Sbjct: 22  RTPPQDLDAETSVLGSMMLSKDAIADVVENLRGEDFYKPAHETIYDVILDLYASGEPADA 81

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL--- 591
             +   L + G    L ++        L  +   +          + LAL +R       
Sbjct: 82  VTVSNALSKSGD---LARIGGAAYLHTLIQSVPTSANAIFYAEIVRELALLRRLVTAGTR 138

Query: 592 ------------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
                              + +I QVT +  +E    L  +L     +I +
Sbjct: 139 IVQMGYDAQGDTDDLINRAQSEIYQVTERRSSEDYVRLSEVLQPTVEEIER 189


>gi|212691631|ref|ZP_03299759.1| hypothetical protein BACDOR_01126 [Bacteroides dorei DSM 17855]
 gi|212665820|gb|EEB26392.1| hypothetical protein BACDOR_01126 [Bacteroides dorei DSM 17855]
          Length = 287

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I++    I + + +    Y    +R  +      W   PF  EK  SF  +  K  +Y F
Sbjct: 3  IQEAKN-IRLVDFLAGFGYKPVIQRGNSV-----WYKSPFRTEKESSFKVDLHKELWYDF 56

Query: 66 SCHVKGDHLSFLSAL 80
               GD ++    +
Sbjct: 57 GLGKGGDIITLAKEI 71


>gi|118473168|ref|YP_891092.1| replicative DNA helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118174455|gb|ABK75351.1| replicative DNA helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 1024

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 3/122 (2%)

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
              S   G+   +    E A+L  ++     + +  + L    +     Q ++  +   +
Sbjct: 16  PPPSGDFGRQPPQDMAAEQAVLGGMLLSKDAIADVLERLRPGDFYRPAHQSVYDAILDLY 75

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
              +      +   L  RG   LL+++        L S    A       G     AL +
Sbjct: 76  GRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAANAGFYAGIVAEKALLR 132

Query: 587 RF 588
           R 
Sbjct: 133 RL 134


>gi|124005694|ref|ZP_01690533.1| replicative DNA helicase [Microscilla marina ATCC 23134]
 gi|123988762|gb|EAY28368.1| replicative DNA helicase [Microscilla marina ATCC 23134]
          Length = 455

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 14/147 (9%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  LL TLIN P  + E    L    +   E Q ++  +F  +   +      +  +L  
Sbjct: 15  EQTLLGTLINEPVTMVEVIDILEVESFYRTEHQVIYEAIFELYAAGENIDLITLSHQLRA 74

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   +L+       L   + E ++      Y + L    +   + RQ   +  Q+ 
Sbjct: 75  T------SKLEMIGSAKYLIFLSREVSLALNTVKYARIL----QEMQIRRQMIALGNQL- 123

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQ 630
              +K   + T  +  +L +   Q+ +
Sbjct: 124 ---SKSAQDITHDVFDLLSDTQHQLQK 147


>gi|295101820|emb|CBK99365.1| hypothetical protein FP2_19600 [Faecalibacterium prausnitzii L2-6]
          Length = 631

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 1   MNYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M Y ++ I        + + +  Q     R                HD    S     +K
Sbjct: 1   MYYTQEQIDHA-NQADLVSFLQSQGEQLTRAGQEYRWKR-------HD----SLTVRGNK 48

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-------------VPLPVVDPK 106
             +Y  S    G  + F+    G SF E+V+ L    G               LP   P 
Sbjct: 49  --WYRHSQSKGGGPVDFVMEFFGKSFTEAVELLTGEKGAAPPPDSPAPLSDFRLPPRSPT 106

Query: 107 IEKKEKIQTDLIRLIEVATDFF 128
            E+ ++  T+  R+ E  T FF
Sbjct: 107 AEQVKRYLTEARRIDEDVTGFF 128


>gi|153813931|ref|ZP_01966599.1| hypothetical protein RUMTOR_00138 [Ruminococcus torques ATCC 27756]
 gi|317501428|ref|ZP_07959627.1| hypothetical protein HMPREF1026_01571 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145848327|gb|EDK25245.1| hypothetical protein RUMTOR_00138 [Ruminococcus torques ATCC 27756]
 gi|316897172|gb|EFV19244.1| hypothetical protein HMPREF1026_01571 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 174

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119
            ++CF C   GD + F + L G S  E+  +LA    V          ++  ++  +  
Sbjct: 6   RFHCFGCQADGDVIDFTARLFGLSGKEAALKLAEDFSVRYDAKGHDPPRRRPVKRKISE 64


>gi|198421268|ref|XP_002122655.1| PREDICTED: similar to zonadhesin, partial [Ciona intestinalis]
          Length = 2534

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 81/221 (36%), Gaps = 6/221 (2%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            +Y   +       Q  ++     +   +  +++A+  +         ++   K    ++ 
Sbjct: 1928 KYELKEKHYQEYAQTVRELAPSVAQSAQQAEQSAQRLESTKQRLEQERAEAEKKFAQERL 1987

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRY-DNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             L E       +      ++  +E    +      LQ L         +++  + EEI +
Sbjct: 1988 ELEEEGKRRIAMEMEDFEKQLAEETKAEKLKAEKTLQTLEKRKEKMLKDKREKMKEEIDR 2047

Query: 540  RLCERGFGELLKQ-LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                    E  ++ L++  RD   ++   +   + ++   ++ L   ++ ++   +K +I
Sbjct: 2048 AAAAGASEEEQRKILEQHERDVEKFTNKMDRERLRMQSQLEERLKKRRKEKM-QAKKGDI 2106

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            E+Q  + T K   +K    +  + E   QI  ++    +IE
Sbjct: 2107 EQQ-QETTRKEMDDKQKAELQQVQE--KQIQAMQETSKLIE 2144



 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/325 (11%), Positives = 92/325 (28%), Gaps = 50/325 (15%)

Query: 353  LSRGEDPDSFIRCYGKTA-FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
            +    D +   R        ++L+      +D L +   + ++      R  L       
Sbjct: 1703 MKDKHDAEIRARTDLTDEQMQQLMAAHQQELDELDRGLEKQQNKQRAALRDRLAARRAKK 1762

Query: 412  INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
             + +++++      + I  R +    K  +          +  +    +   + + +   
Sbjct: 1763 TSLLRNKQETDAKKEEIEQRKEMSQVKAKSAKEAEKAAIIEGIQQNGAESSHKVIQRVLE 1822

Query: 472  VKGKLSKKPSLREAAL--------------------LLTLINH--------------PAI 497
             +     K    E AL                    +  ++N               P +
Sbjct: 1823 QRQNQEMKDLEAEFALKKKIILDECLQDIRDQFRKKMDAMLNRHESELEQLENEGLSPDL 1882

Query: 498  LQEQYQEL-----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
            L+ + +EL      +IR      +K    +             +    L E+ + E  + 
Sbjct: 1883 LEARREELFGRQKDEIRSLEQNHKKECKEIEEHATAGWNLDFAKAKYELKEKHYQEYAQT 1942

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
            +          +   E +   +              + L +++ E EK+ AQ   + E E
Sbjct: 1943 VRELAPSVAQSAQQAEQSAQRLEST----------KQRLEQERAEAEKKFAQERLELEEE 1992

Query: 613  KTAILISILHEVHIQIHQIESQEAM 637
                +   + +   Q+ +    E +
Sbjct: 1993 GKRRIAMEMEDFEKQLAEETKAEKL 2017


>gi|296392719|ref|YP_003657603.1| replicative DNA helicase [Segniliparus rotundus DSM 44985]
 gi|296179866|gb|ADG96772.1| replicative DNA helicase [Segniliparus rotundus DSM 44985]
          Length = 485

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/204 (9%), Positives = 58/204 (28%), Gaps = 15/204 (7%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           + +  ++     +                             G+   + ++ E ++L  +
Sbjct: 5   VGESRERVGLVRAEDAPREDHGLGSAVASRDRGPSSDGPYDAGRQPPQDAVAEQSVLGGM 64

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           +     + +  + +    +     Q ++  +   F   +      +   L  +G    L 
Sbjct: 65  LLSKDAIADVLEHVQGKDFYRPAHQLVFDAILELFGRGEPADAVLVAAELERKGH---LG 121

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ-----VT 606
           ++        L S+   A        Y + +A     + + R+  E   +I Q       
Sbjct: 122 RIGGAPYLHTLISSVPTAA---NASYYAEIVA----EKAIMRRLVEAGTRIVQYGYGGAD 174

Query: 607 AKGEAEKTAILISILHEVHIQIHQ 630
            +  AE      + + +V  +   
Sbjct: 175 GQDAAEVVDRAQAEIFDVTQRKRA 198


>gi|16758964|ref|NP_445762.1| homer protein homolog 3 [Rattus norvegicus]
 gi|38604639|sp|Q9Z2X5|HOME3_RAT RecName: Full=Homer protein homolog 3; Short=Homer-3; AltName:
           Full=VASP/Ena-related gene up-regulated during seizure
           and LTP 3; Short=Vesl-3
 gi|5103675|dbj|BAA35110.2| Vesl-3 [Rattus norvegicus]
 gi|149036003|gb|EDL90669.1| homer homolog 3 (Drosophila), isoform CRA_b [Rattus norvegicus]
          Length = 358

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 68/227 (29%), Gaps = 24/227 (10%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWK--------KNARHRDQKGPSQRLMQSSLVK 473
                   ++ Q++ +             +         + +       S    +  L +
Sbjct: 96  EQQLTQFAEKFQEVKEAARLAREKSQDGGELTSTALAMASHQVPPSPLVSTNGPEEKLFR 155

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            + +  P   E   L  +++  ++ + Q++        +   Q+L   L         + 
Sbjct: 156 SQSADAPGPTERERLKKMLSEGSVGEVQWEA-EFFALQD-SNQRLAGALREANAAATQWR 213

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            +   QR       + + +L+ QV    + +   EA    V Q       L  R +   +
Sbjct: 214 QQLEVQRAEAEHLRQRVAELEAQVAAEPVRAGEKEATSQSVEQ-------LEARVQTKDQ 266

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILH-------EVHIQIHQIES 633
           + + ++ Q        +  +       +        E+  Q+  +ES
Sbjct: 267 EIQTLKNQSTGPREAPDTAEREETQQQVQDLETRNAELEQQLRAMES 313


>gi|218440748|ref|YP_002379077.1| chromosome segregation ATPase [Cyanothece sp. PCC 7424]
 gi|218173476|gb|ACK72209.1| Chromosome segregation ATPase-like protein [Cyanothece sp. PCC
           7424]
          Length = 785

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 80/252 (31%), Gaps = 24/252 (9%)

Query: 403 ELEIHLKNCINHIKDQKLRY-YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
           E    L+  + + KD   +     +    +++        +      + +K    ++  G
Sbjct: 334 ETIRELEQKLQNFKDTVAKDAEALREFEQKVETFKNTVAQDAEALREFEQKVESFKNTVG 393

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTL---INHPAILQEQYQELADI-RYDNNELQK 517
              + +Q    K +  ++  +RE      L   +    +L    QEL D+   +N ++++
Sbjct: 394 QDAQALQELQQKIQDFQEIVVREGERFRALDFNLQDVQVLNLDRQELKDLITLNNQDVER 453

Query: 518 L---------WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD---RQVRDAGLWSA 565
                        + +     +      I  R    G  E +++L    + +        
Sbjct: 454 FPPQQEINAEIEQVVTRLDNLEQLEDNLISSRERLEGAREQIQELQDLRQDIITLNTQDI 513

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSR-------QKEEIEKQIAQVTAKGEAEKTAILI 618
                  ++    Q  +        L +       + E+  +QI ++ A  ++E    L 
Sbjct: 514 ERLGTRQELEAKLQNIVTRIDNLEQLEQDLISSRERLEQASQQIQELRALQDSESLQKLD 573

Query: 619 SILHEVHIQIHQ 630
           + +      + Q
Sbjct: 574 TEIQNAKAVLDQ 585


>gi|268318011|ref|YP_003291730.1| ATP-dependent chaperone ClpB [Rhodothermus marinus DSM 4252]
 gi|262335545|gb|ACY49342.1| ATP-dependent chaperone ClpB [Rhodothermus marinus DSM 4252]
          Length = 880

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 75/213 (35%), Gaps = 12/213 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++KYI +     R ++           +  +++    + ++     + + AL+    ++H
Sbjct: 320 YRKYIEKDKALERRFQPVLVEEPSVEDTISILRGIKDRYEVHHGVRITDGALIAAAELSH 379

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +    +L   + S   E      +     +          Q  
Sbjct: 380 RYITDRHLPD-KAIDLIDEAAARLRIEIDSMPEELDQLERQIRQLEIEREAVKRDNDQ-- 436

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            +++      A  E     +R  +QQ   L +R R +  + E++  +  Q+  +GE  + 
Sbjct: 437 EKLKAINEQLANLEEQRRALRARWQQEKELIQRIRSIKEEIEQLRIESEQLERQGEYGRV 496

Query: 615 AI--------LISILHEVHIQIHQIESQEAMIE 639
           A         L   L E   Q+ +++   A+++
Sbjct: 497 AEIRYGRIPELEKQLKEAQQQLEEVQKDGALLK 529



 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 64/218 (29%), Gaps = 19/218 (8%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y     +RL+ + ++          +  +             +  ++++K  L++     
Sbjct: 252 YRGEFEERLKAVVREAAASEGQVILFIDELHTVVGAGAAEGAVDAANILKPALARG---- 307

Query: 484 EAALLLT--------LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           E  ++           I     L+ ++Q +        +   +   +   +         
Sbjct: 308 EIRVIGATTLDEYRKYIEKDKALERRFQPVLVEEPSVEDTISILRGIKDRYEVHHGV--- 364

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
               R+ +       +   R + D  L     +       +   +  ++ +    L RQ 
Sbjct: 365 ----RITDGALIAAAELSHRYITDRHLPDKAIDLIDEAAARLRIEIDSMPEELDQLERQI 420

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            ++E +   V    + EK   +   L  +  Q   + +
Sbjct: 421 RQLEIEREAVKRDNDQEKLKAINEQLANLEEQRRALRA 458


>gi|224535168|ref|ZP_03675707.1| hypothetical protein BACCELL_00029 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523218|gb|EEF92323.1| hypothetical protein BACCELL_00029 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 976

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 54/450 (12%), Positives = 124/450 (27%), Gaps = 52/450 (11%)

Query: 78  SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH-------H 130
               G SF E++ +LA+   V    ++  + K +  +       +  + FF         
Sbjct: 79  MYEEGISFSEAIFKLASRYNVT-NELNKSVNKPDIRKRPAKADEKEGSRFFELEKTFTAD 137

Query: 131 SLKNARDKRLHYYLDERGI----DSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEA 186
            LK    +    ++D            ++  ++     +             S     + 
Sbjct: 138 QLKIMGPRVKQEHIDRLNWYVAKSISYVKNREVTTKYTTPTYPIFMRECIVQSSNDPEKV 197

Query: 187 GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK 246
                         ++R          +  +           +  +  N+ E  LF +  
Sbjct: 198 VKFYKIYEPLNPDKQWRFSYTPDGVKPKEFINGLE----ELKKLYREYNAKEEALFKQD- 252

Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL-GTALTEY 305
                        K+  K  +        +  G  D L +   G   +  +     ++  
Sbjct: 253 ------------PKNEDKPYKEKKLEEAFICSGERDSLCVASLGYSPLWFNSETYKVSPE 300

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
           +++ ++K   ++    D D  G+R A    +L L ++          L+  +D     R 
Sbjct: 301 EIKEIYKYVEKLYNIPDIDSTGIRKAT---ELALKYMDILTVWLPSWLTTYKD----WRG 353

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             +  F   +       D  ++   +        E  + E   K       D     +Y 
Sbjct: 354 KPRKDFRDFMELRQKNED--FRNLLKMAMPARFWEITQNEKTGKKQYEIDADCL---HYF 408

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             +       F     E+S   +Y +   R       S    +      +   +    + 
Sbjct: 409 LKLNG-----FHALRDENSANTQYVRVVGRI-----VSSIKGKDIRTFLRQFARERYLDR 458

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNEL 515
            +   ++N P +     + L +I  D    
Sbjct: 459 NIRNLILNSPRMSDGALENLDEITLDFTSY 488


>gi|260203198|ref|ZP_05770689.1| replicative DNA helicase [Mycobacterium tuberculosis K85]
 gi|289572634|ref|ZP_06452861.1| replicative DNA helicase [Mycobacterium tuberculosis K85]
 gi|289537065|gb|EFD41643.1| replicative DNA helicase [Mycobacterium tuberculosis K85]
          Length = 123

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 26/86 (30%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P       S   G+   +    E ++L  ++     + +  + L    +     Q ++ 
Sbjct: 8   APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGF 546
            +   +   +      +   L  RG 
Sbjct: 68  AILDLYGRGEPADAVTVAAELDRRGL 93


>gi|229025759|ref|ZP_04182159.1| DNA primase [Bacillus cereus AH1272]
 gi|228735542|gb|EEL86137.1| DNA primase [Bacillus cereus AH1272]
          Length = 176

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/188 (9%), Positives = 50/188 (26%), Gaps = 13/188 (6%)

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
           +         ++K  + + ++          +            E  ++  ++    +  
Sbjct: 1   METLLNQLHQYRKEQKVQQKQIKQVSKPSQIVQTKPKLTGFERAEREIIYHMLQSAEVAV 60

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
                +    +   E + +   L++ + +            L +     ++  +      
Sbjct: 61  RMEPHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTFLSWLSDEKLKNIITDI------ 112

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
               S     N     +  Q  L   KR      +K EI  ++ Q+      E     ++
Sbjct: 113 ----STDEFINPEYTEEVLQGHLETLKR-HQEKLEKMEIIFKVKQMEKTDPVEAAKYYVA 167

Query: 620 ILHEVHIQ 627
            L     +
Sbjct: 168 YLQNQKAR 175


>gi|86604906|ref|YP_473669.1| ATP-dependent chaperone protein ClpB [Synechococcus sp. JA-3-3Ab]
 gi|86553448|gb|ABC98406.1| ATP-dependent chaperone protein ClpB [Synechococcus sp. JA-3-3Ab]
          Length = 880

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 85/215 (39%), Gaps = 12/215 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++K+I + +   R ++     +     +  +++    + +L     + ++AL+   +   
Sbjct: 321 YRKHIEKDAALERRFQPVYVDQPSVEDTISILRGLKERYELHHGVKISDSALVAAAVLSN 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLD 554
             + E++     I   +    KL   + S     K    +EI +R+ +    EL LK+ D
Sbjct: 381 RYISERFLPDKAIDLVDEAAAKLKMEITS-----KPVELDEIDRRIMQLQMEELSLKKED 435

Query: 555 RQVRDAGLWSATTEAN-----IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
                  L     E         ++   +Q      +R + L  +++ ++ QI Q   K 
Sbjct: 436 DPASKERLGKIEQELANLMERQRELSARWQMEKEAIERLQNLKAERDAVKLQIEQAEQKY 495

Query: 610 EAEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGK 643
           +  + A L    L E+  QI + E+  A ++  G+
Sbjct: 496 DLNRAAELKYGKLMELERQIQEQEAHLAKLQANGE 530


>gi|332800519|ref|YP_004462018.1| replicative DNA helicase [Tepidanaerobacter sp. Re1]
 gi|332698254|gb|AEE92711.1| replicative DNA helicase [Tepidanaerobacter sp. Re1]
          Length = 446

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 61/182 (33%), Gaps = 20/182 (10%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K+       E ++L +++     +    ++L    +     +K++  +   + +++    
Sbjct: 5   KIPPYNLEAEQSVLGSMLLSKDAITVAAEQLRVQDFYKESHKKIFEVIVRLYEDREPVDL 64

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN----IVDVRQGYQQALA------- 583
             + + L      E +           +       +    IV+ +   ++ +        
Sbjct: 65  ITVTEALRSAKILEQIGGATYLTALTEIVPTAANISYYCKIVEEKALIRRLINTTSEILS 124

Query: 584 -LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH----IQIHQIESQEAMI 638
             Y +   +    +E E++I ++  K    +       + E+      +I Q+ + E  I
Sbjct: 125 MAYDQQNEVEDLLDEAERRIFEIAQK----RRVENFHHIKEILFDTFERIEQLYNSEGGI 180

Query: 639 EG 640
            G
Sbjct: 181 TG 182


>gi|58616222|ref|YP_195351.1| hypothetical protein p1B110 [Azoarcus sp. EbN1]
 gi|56315683|emb|CAI10327.1| hypothetical protein p1B110 [Aromatoleum aromaticum EbN1]
          Length = 336

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 10/103 (9%)

Query: 9   KDLLIHIPISN----LIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG-FYY 63
           +++   +P+S+    ++G+ V+  R         +      HD +  +      KG F+ 
Sbjct: 3   EEVRKQVPLSSFLASILGEPVE-TRTGPRWSSCPHCGPS-EHDSRKTTLS---GKGEFFR 57

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK 106
           CF+C   GD +   +    CS  E+  +LA  A V +P    +
Sbjct: 58  CFACGSHGDVIEAAALYHRCSHKEAAAKLAGDARVVVPFRHSR 100


>gi|255281156|ref|ZP_05345711.1| toprim domain protein [Bryantella formatexigens DSM 14469]
 gi|255268113|gb|EET61318.1| toprim domain protein [Bryantella formatexigens DSM 14469]
          Length = 625

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 46/144 (31%), Gaps = 30/144 (20%)

Query: 1   MNYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M Y ++ I        + + + GQ     R                HD    S     +K
Sbjct: 1   MYYTQEQIDRA-NQADLVSFLQGQGEQLTRAGQEYRWKR-------HD----SLTIRGNK 48

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL---------------AAIAGVPLPVVD 104
             +Y  S    G  + F+    G SF E+V+ L               A+ +   LP  +
Sbjct: 49  --WYRHSQSKGGAPIDFVMEFFGKSFTEAVELLTGEKGAAPPPDRPSPASFSDFRLPPRN 106

Query: 105 PKIEKKEKIQTDLIRLIEVATDFF 128
           P         T + R+ E  + FF
Sbjct: 107 PDNRIVRNYLTAVRRIDEDVSGFF 130


>gi|226362635|ref|YP_002780413.1| replicative DNA helicase [Rhodococcus opacus B4]
 gi|226241120|dbj|BAH51468.1| replicative DNA helicase [Rhodococcus opacus B4]
          Length = 717

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 54/178 (30%), Gaps = 15/178 (8%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
               + P     +     G+   +    E ++L  ++     + +  + L    +     
Sbjct: 7   RGHSEYPGPPDAEPGEEFGRQPPQDMAAEQSVLGGMLLSKDAIADVLEVLRPGDFYRPAH 66

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           Q ++  +   +   +   P  +   L  RG      +L R      L + T         
Sbjct: 67  QSVYDVILDLYSRGEPADPVTVSAELDRRG------ELRRIGGAPYLVTLTQTVPTAANA 120

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQV-----TAKGEAEKTAILISILHEVHIQI 628
             Y + +A     + + R+  +   +I Q        +  AE      + + EV  + 
Sbjct: 121 GYYAEIVA----EKAILRRLVDAGTRIVQYGYTGGEGQDVAEVVDRAQAEIFEVTERR 174


>gi|325280649|ref|YP_004253191.1| putative transposon-related/mobilization protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324312458|gb|ADY33011.1| putative transposon-related/mobilization protein [Odoribacter
           splanchnicus DSM 20712]
          Length = 363

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 83/254 (32%), Gaps = 13/254 (5%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA-------I 95
            P  ++ TPSF  + +   +  +     G  +  +    GC+   ++ RL          
Sbjct: 71  SPLREDNTPSFKVDYNVNLWCDYGTGEGGTLIDLVMKQHGCNAYGAICRLEQGNTASFSF 130

Query: 96  AGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIE 155
            G  LP  D K +    I+   I+ ++      +   +         Y+ E         
Sbjct: 131 HGKDLPERDTKRQAASPIEIRRIQPLQNPALIRYLQERGISPGTASPYVQEMYYRIGGKP 190

Query: 156 MFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF-PIRSSR 214
            F L +  DS      + R KG + + I       +  ++   ++ F + L F  IR  +
Sbjct: 191 YFALAFKNDSGGYELRNPRFKGSTSKDITHIRQQGEPRDTCFVFEGFLDFLSFLTIRQQK 250

Query: 215 GQVIAFG----GRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS 270
              +          L+   +      P     H    L N   A     ++IR++ +   
Sbjct: 251 SPDMPCTDWQDYVILNSTANTDKALYPLADYGHIHCMLDN-DEAGRKAVEAIRQEYKWRV 309

Query: 271 SSFIILVEGYMDVL 284
                L  G+ D+ 
Sbjct: 310 RDASHLYSGHNDLN 323


>gi|126734686|ref|ZP_01750432.1| hypothetical protein RCCS2_12454 [Roseobacter sp. CCS2]
 gi|126715241|gb|EBA12106.1| hypothetical protein RCCS2_12454 [Roseobacter sp. CCS2]
          Length = 883

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 70/213 (32%), Gaps = 22/213 (10%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           ++ FQ +        R    +  +  +     R +         ++   LR   ++  L 
Sbjct: 397 RRFFQPFARAVIEQRRDLMWSKANAPRVNQILRAVSHRPEGLFSNETTYLRLRTIIRRL- 455

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER-------- 544
                         D+   +    ++   L+   V+ +     +  +RL           
Sbjct: 456 ----------DNFDDVGLTDEVQAEIVEALWDLAVQLEDGRLADARERLRRAQERLSEAM 505

Query: 545 ---GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                 E + +L +++R+A        A   +   G  QA +  +  +L   + + +  +
Sbjct: 506 RNGASDEEIAELMQELREATDDYLRMLAEEAEPNDGTDQADSGQQSEQLGMDELQALMDR 565

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           I ++  +G   +   L+  L+++   +   + +
Sbjct: 566 IQELMEEGRMAEAQELMEQLNQMMENLRVTQGE 598



 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 9/119 (7%)

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
           + +      +   L       L       ++++LD           T E     V   + 
Sbjct: 425 NQILRAVSHRPEGLFSNETTYLR---LRTIIRRLDNF----DDVGLTDEVQAEIVEALWD 477

Query: 580 QALALYK-RFRLLSRQKEEIEKQIAQVTAKG-EAEKTAILISILHEVHIQIHQIESQEA 636
            A+ L   R      +    ++++++    G   E+ A L+  L E      ++ ++EA
Sbjct: 478 LAVQLEDGRLADARERLRRAQERLSEAMRNGASDEEIAELMQELREATDDYLRMLAEEA 536


>gi|317473779|ref|ZP_07933060.1| DNA primase [Bacteroides eggerthii 1_2_48FAA]
 gi|316910036|gb|EFV31709.1| DNA primase [Bacteroides eggerthii 1_2_48FAA]
          Length = 287

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL--- 80
          Y    ++         W   P  +E   SF  N     ++ F     G+ ++  + L   
Sbjct: 20 YTPVKQQGK-----SLWYKSPLRNETDASFKVNTELNQWHDFGIGKGGNIIALAAELYHS 74

Query: 81 LGCSFIESVQRLAAI 95
             +++  ++R+A  
Sbjct: 75 ENVAYL--LERIAER 87


>gi|224165828|ref|XP_002338860.1| predicted protein [Populus trichocarpa]
 gi|222873715|gb|EEF10846.1| predicted protein [Populus trichocarpa]
          Length = 320

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 64/185 (34%), Gaps = 21/185 (11%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
               ++     K   +    E + L +++ +  +L E    L +  +  +  +K++  + 
Sbjct: 2   SPGGKTRAQILKNLPQSLEAEKSFLGSILLNNEVLTEIGDALKEDDFSLDAHRKIYMTMR 61

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGEL------LKQL-------------DRQVRDAGLWS 564
               ++       +   L ++G+  L      +++L                +++ G++ 
Sbjct: 62  EMSEKRVPVDSVTLADALNKKGWSGLTGGPTYIEELSLIVPTAANAKHYANLLKEKGIYR 121

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI--EKQIAQVTAKGEAEKTAILISILH 622
               +     R+GY+++  +     L  R+  EI   +        G+ +        L 
Sbjct: 122 KLILSAEEIARKGYEESEDIEVLLDLAERKILEIGSNRTTRGFVKVGDVQYIEAQYKRLE 181

Query: 623 EVHIQ 627
           E+  +
Sbjct: 182 ELRAR 186


>gi|149175309|ref|ZP_01853931.1| hypothetical protein PM8797T_20958 [Planctomyces maris DSM 8797]
 gi|148845918|gb|EDL60259.1| hypothetical protein PM8797T_20958 [Planctomyces maris DSM 8797]
          Length = 1247

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 82/247 (33%), Gaps = 13/247 (5%)

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDR-LQQLFQKYITEHSGYGRYWKKNARHRD 458
           +  +    +      I+ Q      ++ +  + + + F K   +              + 
Sbjct: 754 QWQQTRDLVSELDEQIQQQADIQNQTEKLARKTITKTFGKLKLQEQADLEKLAHRQEQQA 813

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREA--ALLLTLINH--PAILQEQYQELADIRYDNNE 514
            +  + R +  +L   +     S R+     +  L  +  P ++++    +   +     
Sbjct: 814 DQFKAFRNLLDTLNDQEQEIAHSERQRNQEAIDFLRKNSIPEVMKQTADRIKQNQVGQAL 873

Query: 515 LQKL-----WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
            ++         L + F  Q      E+  +L +      L  + ++  +        E 
Sbjct: 874 QEQQQLQESMQKLKNIFENQPVNSTAELLNQLIKSEQE--LNLIKQKQEEILQKLKKAEN 931

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
              D  +   +   L K+ + L +Q +++E ++ +++    A+          ++   + 
Sbjct: 932 AP-DSEEKEAELQKLRKQEQELKQQMQQLELKLQRLSLNKAADSMQRSGRRTSQIDNALQ 990

Query: 630 QIESQEA 636
           Q  ++EA
Sbjct: 991 QGNTEEA 997


>gi|91788074|ref|YP_549026.1| ATPase [Polaromonas sp. JS666]
 gi|91697299|gb|ABE44128.1| ATPase AAA-2 [Polaromonas sp. JS666]
          Length = 866

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 74/207 (35%), Gaps = 4/207 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++KYI + +   R ++K          +  +++    K ++     + + A++    ++H
Sbjct: 317 YRKYIEKDAALERRFQKILVDEPTVEATIAILRGLQEKYEVHHGVQITDPAIVAAAELSH 376

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL- 553
             I      +   I   +    K+   + S            I  ++          +  
Sbjct: 377 RYITDRFLPD-KAIDLIDEAAAKIKIEMDSKPEVMDRLDRRLIQLQIEREAVRREKDEAS 435

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            ++     +  A  +  I D+ + +Q   A     + +  + + I  QI + T KG+  K
Sbjct: 436 QKRFGLIEVEIAKLQKEISDLDEIWQAEKAQALGSKDVMEEIDRIRFQIEEFTRKGDFNK 495

Query: 614 TAIL-ISILHEVHIQIHQIESQEAMIE 639
            A L    L E+  ++   +  EA  E
Sbjct: 496 VAELQYGKLPELEKRLKAAQDTEAQKE 522


>gi|325268695|ref|ZP_08135324.1| hypothetical protein HMPREF9141_0533 [Prevotella multiformis DSM
          16608]
 gi|324988939|gb|EGC20893.1| hypothetical protein HMPREF9141_0533 [Prevotella multiformis DSM
          16608]
          Length = 310

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%)

Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLA 93
          P+ ++   S   + ++  +Y F     G  +  +  L GC   +++  LA
Sbjct: 40 PYREDHNASMKVDFARNLWYDFGLGKGGSIIDLVMLLQGCDAHKAMSLLA 89


>gi|260590823|ref|ZP_05856281.1| putative mobilizable transposon, excision protein [Prevotella
          veroralis F0319]
 gi|260537309|gb|EEX19926.1| putative mobilizable transposon, excision protein [Prevotella
          veroralis F0319]
          Length = 307

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%)

Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLA 93
          P+ ++   S   + ++  +Y F     G  +  +  L GC   +++  LA
Sbjct: 40 PYREDHNASMKVDFARNLWYDFGLGKGGSIIDLVMLLQGCDAHKAMSLLA 89


>gi|126665190|ref|ZP_01736173.1| replicative DNA helicase [Marinobacter sp. ELB17]
 gi|126630560|gb|EBA01175.1| replicative DNA helicase [Marinobacter sp. ELB17]
          Length = 468

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 55/186 (29%), Gaps = 14/186 (7%)

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
            +             + K+       E A+L  L+       E  + ++ + +   + + 
Sbjct: 2   AKPNLKPANSDPETSRIKVPPHSLEAEQAVLGGLMLDNRRFDEISEMISAVDFYRQDHRL 61

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           ++  +     E +      + + L   G       ++     + L     +       + 
Sbjct: 62  IFGAVERLASENEPLDVVTLAEFLERAG------DIEHAGGLSYLAELAEKTPGAANIRA 115

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Y   +    R R + RQ  E   +I+          ++ ++        QI +      +
Sbjct: 116 YADIV----RERSILRQLVEASGKISDSAFNPLGRNSSEILDEAERTVFQIAEAR----V 167

Query: 638 IEGFGK 643
            EG G 
Sbjct: 168 KEGSGP 173


>gi|222530364|ref|YP_002574246.1| hypothetical protein Athe_2405 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222457211|gb|ACM61473.1| conserved hypothetical protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 361

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 107/369 (28%), Gaps = 49/369 (13%)

Query: 5   RDFIK----DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE---KTPSFHCND 57
           ++ I     D+L  + I           +R            CP+ DE   +    + N 
Sbjct: 2   KELIDITMQDVLDRVRI-------TVLKQRGNELN-----CLCPYCDEPHRREGHLYINI 49

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIES----VQRLA----AIAGVPLPVVDPKIEK 109
           +K  + C  C  +G+ L   + L      E+    VQ +A     +  +   +   +I+ 
Sbjct: 50  AKDTFICHKCGRQGNALQLYALLTNQDTKEAYRELVQEIASGSRRLHHIQYKLQHKEIQP 109

Query: 110 KEKIQTDLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS 168
           +       I   E     +   LK    D+     L  RG+   AI++         +  
Sbjct: 110 R------YIAPPEARDKVYREFLKLLTLDETHKSDLLRRGLSETAIKIKGYKSLNVEKER 163

Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
                R        +       +   +             P+R+ +GQ++    R     
Sbjct: 164 RLLICRVMQEKGLNLAGIPGFYEHKTTGEWDFIPYQGYAIPVRNFKGQIVGLQVRMNEPA 223

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL-SLC 287
            S     S                  +    ++    V       + + EG +    +  
Sbjct: 224 LSKYRWFSSSN------------SKDVGTPAEASLHAVGSMEEGIVYVTEGALKADVASY 271

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAID-LVLCHLIPG 345
            +G   +     ++  +  +  L ++ P+ ++L FD D          ++ +       G
Sbjct: 272 LSGQMFIGLPGVSSCHKQLIETLKQIQPKVVILAFDMDCEEKVEVRLNVEKVKKLLTENG 331

Query: 346 NRVNFVLLS 354
                +   
Sbjct: 332 FEFKQITWD 340


>gi|331700353|ref|YP_004336592.1| replicative DNA helicase [Pseudonocardia dioxanivorans CB1190]
 gi|326955042|gb|AEA28739.1| replicative DNA helicase [Pseudonocardia dioxanivorans CB1190]
          Length = 469

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 49/180 (27%), Gaps = 15/180 (8%)

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
                 +         S     +   +    E ++L  ++     + +  + L    +  
Sbjct: 10  GRPRAVRTDEGAPGGDSPSPFDRQPPQDLTAEQSVLGGMLLSKDAIADVVEILRPDDFYR 69

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
              Q ++  +   +   +      +   L  RG      +L R      L +        
Sbjct: 70  PAHQTVYDCILDLYGRGEPADAVTVSAELQRRG------ELIRLGGAPYLHTLIATVPTA 123

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQ 627
                Y + +A     + + R+  E   +I Q            E      + ++EV  +
Sbjct: 124 ANAAYYAEIVA----EKAILRRLVEAGTRIVQLGYHGADGSDVDEVVDRAQAAIYEVTER 179


>gi|322376307|ref|ZP_08050800.1| hypothetical protein HMPREF0851_00093 [Streptococcus sp. M334]
 gi|321282114|gb|EFX59121.1| hypothetical protein HMPREF0851_00093 [Streptococcus sp. M334]
          Length = 361

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 54/163 (33%), Gaps = 34/163 (20%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
           I++    I I ++            N +   +          P HD    SF    +   
Sbjct: 3   IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ------T 115
           +  FS  ++GD + F+  + G SF E++  L+            +  ++++ +       
Sbjct: 47  FKWFSRDIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAVQEKRERPFYYPLK 100

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158
            +         ++    +   ++ +   + +  I   + +  +
Sbjct: 101 RIEDSNCSLARYYLTECRGISEEIVRRMIQQGLIAQASWKTNE 143


>gi|886302|gb|AAB53118.1| helicase [Mycobacterium leprae]
          Length = 257

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 3/121 (2%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             S   G+   +    E ++L  ++     + +  + L    +     Q ++  +   + 
Sbjct: 16  PPSEDFGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRSGDFYRPAHQNVYDAILDLYG 75

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
             +      +   L  RG   LL+++        L S    A       G     AL +R
Sbjct: 76  RGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAANAGYYAGIVAEKALLRR 132

Query: 588 F 588
            
Sbjct: 133 L 133


>gi|15828446|ref|NP_302709.1| replicative DNA helicase [Mycobacterium leprae TN]
 gi|221230923|ref|YP_002504339.1| replicative DNA helicase [Mycobacterium leprae Br4923]
 gi|13432150|sp|P46394|DNAB_MYCLE RecName: Full=Replicative DNA helicase; Contains: RecName: Full=Mle
           dnaB intein
 gi|2959407|emb|CAA17948.1| replicative DNA helicase DnaB [Mycobacterium leprae]
 gi|13093876|emb|CAC32212.1| replicative DNA helicase [Mycobacterium leprae]
 gi|219934030|emb|CAR72780.1| replicative DNA helicase [Mycobacterium leprae Br4923]
          Length = 604

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 3/121 (2%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             S   G+   +    E ++L  ++     + +  + L    +     Q ++  +   + 
Sbjct: 16  PPSEDFGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRSGDFYRPAHQNVYDAILDLYG 75

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
             +      +   L  RG   LL+++        L S    A       G     AL +R
Sbjct: 76  RGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAANAGYYAGIVAEKALLRR 132

Query: 588 F 588
            
Sbjct: 133 L 133


>gi|309811418|ref|ZP_07705205.1| replicative DNA helicase [Dermacoccus sp. Ellin185]
 gi|308434725|gb|EFP58570.1| replicative DNA helicase [Dermacoccus sp. Ellin185]
          Length = 463

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
             +          SS+  GKL  +    E +++  ++     + +   E+  I +     
Sbjct: 6   PYEAPPEFDGAGSSSMPPGKLPPQDLQAEQSVIGGMMLSKDAIADVIAEVKGIDFYRPAH 65

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           + ++  +   +   +      +   L +RG    L ++  Q     + ++   A      
Sbjct: 66  ETIFDAITDLYGRGEPADAITVADELTKRG---ELARIGGQAYLHQIIASVPTAA---NA 119

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             Y Q +A     R + R+  +   +I Q+
Sbjct: 120 GYYAQIVA----ERAVLRRLVDAGTRIVQM 145


>gi|283780440|ref|YP_003371195.1| replicative DNA helicase [Pirellula staleyi DSM 6068]
 gi|283438893|gb|ADB17335.1| replicative DNA helicase [Pirellula staleyi DSM 6068]
          Length = 485

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 76/203 (37%), Gaps = 12/203 (5%)

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKP--SLREAALLLTLINHPAILQEQYQELADIRYD 511
           A++R + G ++RL +    +    + P     E  LL +++  P +L +    +    + 
Sbjct: 2   AKNRREDGAARRLFEQPAEQVGDRQPPFDRQAEIGLLGSIVLLPDVLDDVVMIVRSEDFY 61

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL------LKQLDRQVRDAGLWSA 565
           ++  +KL+S + +     K   P  +  RL   G  E       L ++   V +A   + 
Sbjct: 62  DDAHRKLFSHMCALHEGNKKIDPTLLIDRLKTAGDFEAVGGTAYLSKIINSVPNAAHATY 121

Query: 566 TTEA--NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
             E        R   Q +  + +     S++ + +  Q  Q        +    +  L +
Sbjct: 122 YAEIVRTKSTFRSLIQASTEILRDAYDESQEAKHLLSQAEQKIFSILDVRGDNTVQSLKD 181

Query: 624 VHIQIHQIESQEAMIEGFGKMSG 646
           V  +   ++  EA + G    SG
Sbjct: 182 VLQK--SMDRLEARMSGTLDTSG 202


>gi|213031134|emb|CAR31471.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 361

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 54/163 (33%), Gaps = 34/163 (20%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
           I++    I I ++            N +   +          P HD    SF    +   
Sbjct: 3   IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ------T 115
           +  FS  ++GD + F+  + G SF E++  L+            +  ++++ +       
Sbjct: 47  FKWFSRDIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAVQEKRERPFYYPLK 100

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158
            +         ++    +   ++ +   + +  +   + +  +
Sbjct: 101 RIEDSNCSLARYYLTECRGISEEIIQKMIQQGLMSQASWKTNE 143


>gi|60360228|dbj|BAD90358.1| mKIAA4047 protein [Mus musculus]
          Length = 1506

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 100/284 (35%), Gaps = 20/284 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + E + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 103 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 162

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q   ++        ++  ++   +   +          KL +     +   L T +   
Sbjct: 163 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQT--LQTALEKT 220

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +     +E++ + + L   +   E      E + ++L        L 
Sbjct: 221 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 280

Query: 552 QLDRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
              ++               +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 281 SQIQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 340

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q+    +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 341 QLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 384


>gi|76363508|sp|P53564|CUX1_MOUSE RecName: Full=Homeobox protein cut-like 1; AltName: Full=CCAAT
           displacement protein; Short=CDP; AltName: Full=Homeobox
           protein cux-1
          Length = 1515

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 100/284 (35%), Gaps = 20/284 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + E + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 90  DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 149

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q   ++        ++  ++   +   +          KL +     +   L T +   
Sbjct: 150 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQT--LQTALEKT 207

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +     +E++ + + L   +   E      E + ++L        L 
Sbjct: 208 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 267

Query: 552 QLDRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
              ++               +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 268 SQIQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 327

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q+    +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 328 QLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 371


>gi|308159338|gb|EFO61872.1| Protein 21.1 [Giardia lamblia P15]
          Length = 681

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 71/205 (34%), Gaps = 25/205 (12%)

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
           +N R +  K   + L   S++    +   +L+E      L +   IL+E  + L+D+   
Sbjct: 248 RNLRKQYNKVVRENLEMRSVMDELSATLENLKENN--AQLTSDRDILRETNKHLSDMD-- 303

Query: 512 NNELQKLWSFLFSDFVEQKYFL-PEEIHQ------RLCERGFGELLKQLDRQVRDAGLWS 564
               ++L   + +   E        E+        +  E     +   LD+ + ++ + S
Sbjct: 304 ----RRLKQ-VINHTGEGDVVDCVNELVNTMREQVKAREEDLRNVSNALDQVISESRVMS 358

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA---------EKTA 615
           +       D  +       L ++     R+  E+E ++     + E          E   
Sbjct: 359 SEASDLKKDRARLLNDVKDLRQKLYDKEREHRELEIKLETSNREAEQLVYERQEVEETLT 418

Query: 616 ILISILHEVHIQIHQIESQEAMIEG 640
            L + L      +  I+   A IEG
Sbjct: 419 RLTNELQSAKTLLQAIKQGAASIEG 443


>gi|325115989|emb|CBZ51543.1| putative plectin [Neospora caninum Liverpool]
          Length = 2378

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 87/293 (29%), Gaps = 23/293 (7%)

Query: 362  FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                    + +  +  +   V    +           +  A ++   +  +  ++D+  +
Sbjct: 1353 HALQARLESVQAELASARESVRRAGEDAHRTAESLRLEVEARMQQECQRAVATLRDELAQ 1412

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                +          +  + E            RH   K    R  +   ++  +     
Sbjct: 1413 LQAEREAARAAHASEKAQLVEAQQQAENAFTLFRHDAAKRDGAREEEIRQLREMVKTAED 1472

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL----------FSDFVEQKY 531
             + A        H    ++  QEL   R +  +L++    L                 + 
Sbjct: 1473 AQSAL-------HAEETKKLEQELDGAREETEKLRRETQELVGASEELRRQLEAARADQQ 1525

Query: 532  FLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                   +RL     G  E      R+V +A   +  +       R    Q  A   R  
Sbjct: 1526 HAAAAFEERLRRAVEGEKEAFSAERRRVEEAHAVALES-LRTELTRDLQGQTAAQRSRAA 1584

Query: 590  LLSRQKEEIEKQIAQVTAK-GEAEKT--AILISILHEVHIQIHQIESQEAMIE 639
             L +Q +E E+Q+ +  A+  +A K     L         +  +++++EA I+
Sbjct: 1585 ELEQQLKEAERQLQRERAEKADAAKAWQEDLAQAKRRHEAREEEMKNKEAEID 1637


>gi|305681605|ref|ZP_07404411.1| replicative DNA helicase [Corynebacterium matruchotii ATCC 14266]
 gi|305658765|gb|EFM48266.1| replicative DNA helicase [Corynebacterium matruchotii ATCC 14266]
          Length = 500

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 3/108 (2%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  ++  P ++ +  + L    +     Q +++ +   F   K   P  +  RL 
Sbjct: 70  AEQGVLGAMLLSPTLVVDIIETLVPDDFYRPAHQLIYNAIIDLFSNNKEIDPLIVAGRLD 129

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                  L+++        L SA   A             A+ +R   
Sbjct: 130 R---DNNLERIGGSTYLHTLVSAVPTAANARYYAEIVAEKAVLRRLVA 174


>gi|294955720|ref|XP_002788646.1| hypothetical protein Pmar_PMAR010183 [Perkinsus marinus ATCC 50983]
 gi|239904187|gb|EER20442.1| hypothetical protein Pmar_PMAR010183 [Perkinsus marinus ATCC 50983]
          Length = 1850

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/250 (11%), Positives = 82/250 (32%), Gaps = 36/250 (14%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              +++ ++ L  +     +G  R  ++ +         Q+  +    +     +   RE
Sbjct: 301 VHDLQEHVEDLTARLREAEAGRERSLQELSEATLTLKDQQKGAEEGRARADEEAESLRRE 360

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLPEEIHQRL 541
                  + +  +L++  +    +     EL  + +   +      E+   L E++ Q +
Sbjct: 361 LEAKE--LTYNNLLRQVEEMREHMEEQAKELVAMATEKAAASIKSEEEVAHLKEQLQQAI 418

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEK 600
                 + L++     + A   +   E+ + +  +  +  LA        L  +   +++
Sbjct: 419 GRSNLADGLEEELSDAQMALTEAQDRESALEEAAEKAKNELAQASSELNELREEVTTLQE 478

Query: 601 QIAQVTAK------------GEAEKTAILIS------------------ILHEVHIQIHQ 630
            +A    +             +A+K    +S                   + E   Q+ +
Sbjct: 479 TLAASRREVMEYKESLESLQADADKLKEELSEAEEQREAERLRADRSEHEVEETKRQLAE 538

Query: 631 IESQEAMIEG 640
           +++ EA  +G
Sbjct: 539 LKAGEASKDG 548


>gi|298485641|ref|ZP_07003720.1| Conserved domain protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298159667|gb|EFI00709.1| Conserved domain protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 966

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 31  KTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIES 88
           K      +Y A  P   +K   S   + SKG +  F+     GD +  +  + G + +E+
Sbjct: 35  KRVDGGKEYTAANPTRADKRAGSLKISISKGTWSDFATGDKGGDLIDLVRYIDGGTDVEA 94

Query: 89  VQRLAAIAGVPLPVVDPKIEKKEKI 113
             +LA + GV       K E  +  
Sbjct: 95  CNKLADLLGVTADSAPTKPEPAKSK 119


>gi|282896326|ref|ZP_06304348.1| Chaperone protein clpB 2 [Raphidiopsis brookii D9]
 gi|281198822|gb|EFA73701.1| Chaperone protein clpB 2 [Raphidiopsis brookii D9]
          Length = 871

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 77/215 (35%), Gaps = 4/215 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R +++    +     +  +++    + ++     + +++L+       
Sbjct: 321 YRKYIEKDAALERRFQQVYVDQPDVPDTISILRGLKERYEVHHGVRISDSSLVAAATLSS 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S   E      + +   + +    +    L  
Sbjct: 381 RYISDRFLPDKAIDLVDEAAARLKMEITSKPEELDEIDRKILQLEMEKLSLQKE-SDLAS 439

Query: 556 QVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           + R   L     +        R  +Q    +  + + +    ++I  +I Q       E+
Sbjct: 440 RERLERLEKELADLKEEQAVLRVQWQSEKDIITKIQSIKEDIDKINLEIQQAQRITNYER 499

Query: 614 TAIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
            + L    L E+  Q+  IE++ A  +  GK   R
Sbjct: 500 ASELIYGKLPELQEQLENIETELANTQRTGKSLLR 534


>gi|254818589|ref|ZP_05223590.1| replicative DNA helicase DnaB [Mycobacterium intracellulare ATCC
           13950]
          Length = 458

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 50/166 (30%), Gaps = 15/166 (9%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             S   G+   +    E A+L  ++     + +  + L    +     Q ++  +   + 
Sbjct: 15  SPSEDFGRQPPQDMAAEQAVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYG 74

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
             +      +   L       LL+++        L S    A       GY   +     
Sbjct: 75  RGEPADAVTVAAELDR---RNLLRRIGGAPYLHTLISTVPTA----ANAGYYATIVA--- 124

Query: 588 FRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628
            + L R+  E   ++ Q           AE      + ++EV  + 
Sbjct: 125 EKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYEVADRR 170


>gi|266619985|ref|ZP_06112920.1| DNA primase [Clostridium hathewayi DSM 13479]
 gi|288868449|gb|EFD00748.1| DNA primase [Clostridium hathewayi DSM 13479]
          Length = 594

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 65/517 (12%), Positives = 142/517 (27%), Gaps = 57/517 (11%)

Query: 17  ISNLIGQYVDWDRR--KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
           I ++  + +   RR    N++  D    CPF  ++    + N  K  + C  C  +G  L
Sbjct: 12  ILDV-AELLHLQRRRPGPNSIYTD----CPFCGDRRGKMNLNYVKNVWRCNYCGEQGGML 66

Query: 75  SFLSALLGCSFIESVQRLAAIAGVP--LPVVDPK-------------------------- 106
           S  + L   +  E+ + +     +   +    P                           
Sbjct: 67  SLYARLNHITNSEANREIREALRIENTVYSSSPAINARGRAADSDSGEPTPVALPENAMV 126

Query: 107 ------IEKKEKIQTDLIRLIEVATDFF-HHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159
                  E  +  +  +  + +  +  F   +L+      L    D+RG+    I++   
Sbjct: 127 QAGRRLEETPQSPRASIQEIHQTLSLLFGMLTLRTPHRLHLRS--DKRGLTDEQIDILGF 184

Query: 160 GYAPDSRY--SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217
              P      SL + + Q+G +  + +    L + +     ++R  + ++ P     G +
Sbjct: 185 KSTPPPSQCRSLTDRIIQQGCT-VQGVPGFYLDEDNRWTVKFNRRSSGILIPAVGIDGFI 243

Query: 218 IAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILV 277
                  +     +K  N P      K   L +    +     S    +    +  + + 
Sbjct: 244 RGAQ---ILLDIPMKDKNDPPDKAGTKYIWLSSSNKNMGVTSGSPVHFIGNPCARTVYIT 300

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR-----IVLCFDGDDPGLRAAY 332
           EG +          ++ V+    A     L  L+    R     IV   D D        
Sbjct: 301 EGLLKADIAHMLMDRSFVAV-AGANNVGPLDPLFAALARNGTELIVEANDMDKFNNNMTS 359

Query: 333 KAI-DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391
           K    + L     G     +  +         +   +   + +           +     
Sbjct: 360 KGASKIYLMARRYGMDCRPLTWNPNYKGIDDWQLALRRKEKLVQENPKSSFKASYLFGKC 419

Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
           +                K           +  Y    R+   +L     ++   +     
Sbjct: 420 SFEAIGSYIADWQTDQKKGISLQEYLGLAKAEYELYTRNEASELECLLNSQRHCWKFRIY 479

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           +     +QK      M    +      +P   E  L+
Sbjct: 480 QLDFDGEQKTIPFAFMGIEALYKANYTQPPAVEYRLM 516


>gi|315497368|ref|YP_004086172.1| hypothetical protein Astex_0323 [Asticcacaulis excentricus CB 48]
 gi|315415380|gb|ADU12021.1| hypothetical protein Astex_0323 [Asticcacaulis excentricus CB 48]
          Length = 389

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 21/77 (27%), Gaps = 16/77 (20%)

Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH---DEKTPS--FHCNDSKGFYYCFS 66
               I  + G  V                 CP      +K  S  F  N  K  + C+ 
Sbjct: 13 KELASIEEVAG--VKLVGGGVKR-----RGPCPLCGQGQKKKSSYAFEVNVRKKTFNCYV 65

Query: 67 CHVKGDHLSFLSALLGC 83
          C+  GD +     L   
Sbjct: 66 CNAHGDVI----ELERL 78


>gi|154500933|ref|ZP_02038971.1| hypothetical protein BACCAP_04618 [Bacteroides capillosus ATCC
           29799]
 gi|150270263|gb|EDM97598.1| hypothetical protein BACCAP_04618 [Bacteroides capillosus ATCC
           29799]
          Length = 173

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
            Y+CF C   GD + F +AL G    E+  +LA   G+   
Sbjct: 6   RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLSYE 46


>gi|157786531|ref|YP_001491707.1| Putative DNA primase [Mycobacterium phage Bethlehem]
 gi|40769470|gb|AAR89776.1| gp55 [Mycobacterium phage Bethlehem]
          Length = 136

 Score = 51.0 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 10/95 (10%)

Query: 1  MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
          M   +  I  ++       L   +V  +              C  H +  PS   +    
Sbjct: 1  MEPSQTLIAKVIER-----LAPDWVPPEDTGRVWTP----CLCWAHADTRPSAAVSYKLN 51

Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAI 95
           + C  C  KG  +S L      S   +++ LA  
Sbjct: 52 AFACLGCGTKGSAISLLMKREEVSHHRALE-LAQE 85


>gi|332292441|ref|YP_004431050.1| replicative DNA helicase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170527|gb|AEE19782.1| replicative DNA helicase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 518

 Score = 51.0 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 64/194 (32%), Gaps = 12/194 (6%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
                  + +    SL KGK+  +    E  +L  L+     + E    L+   +  ++ 
Sbjct: 5   KPKPAYNTSKGQVISLEKGKIPPQALDLEVVVLGALMIDKKGVDEVIDILSPEVFYKDQH 64

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSA 565
           + ++  +   F E +      + ++L + G            +L +++            
Sbjct: 65  RHIFEAIRVLFEEGQPVDLLTVSEQLKKMGKLDVAGGDYYLIQLTQKVASSAHIEYHARI 124

Query: 566 TTEANIVDVRQGYQQAL--ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
             +  I          +    Y     +    +  E ++ +VT       +    +++ +
Sbjct: 125 ILQKFIQRSLIKISNEIIEEAYDETTDVFDLLDTAETKLYEVTQGNVKRSSESAQNLVIQ 184

Query: 624 VHIQIHQIESQEAM 637
              +I +I +QE +
Sbjct: 185 AKKRIEEIANQEGL 198


>gi|271970513|ref|YP_003344709.1| replicative DNA helicase [Streptosporangium roseum DSM 43021]
 gi|270513688|gb|ACZ91966.1| replicative DNA helicase [Streptosporangium roseum DSM 43021]
          Length = 451

 Score = 51.0 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 43/149 (28%), Gaps = 10/149 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +        E ++L  ++     + +  + L    +     Q ++  +   +        
Sbjct: 15  RTPPNNIEAEQSVLGGMLLSKDAIADVVEILRSDDFYRPAHQIIYDIITDLYGRGDPADA 74

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I   L +RG    + ++        L +    A             A   R + + R+
Sbjct: 75  VTIFDELQKRG---EVARVGGGAYLHTLTAVVPTAAN-------AGYYARIVREQAILRR 124

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHE 623
             E   +I      G+ E+   L+     
Sbjct: 125 LIEAGTRIVSFGYGGQDEEVDDLVDRAQA 153


>gi|152993709|ref|YP_001359430.1| replicative DNA helicase DnaB, intein-containing [Sulfurovum sp.
           NBC37-1]
 gi|151425570|dbj|BAF73073.1| replicative DNA helicase DnaB, intein-containing [Sulfurovum sp.
           NBC37-1]
          Length = 822

 Score = 51.0 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 53/157 (33%), Gaps = 7/157 (4%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A+L  +I  P I +E   +L    +     Q ++  +     E+K    E +  +L  
Sbjct: 10  ERAVLSAIIFDPEIYEEIAAKLHPHDFYLPFHQHVFLAMEELSREEKPIDEEFLRSKLVS 69

Query: 544 RGFGELLKQLDRQVRD-----AGLWSATTEANIVDVRQGYQQALALYKRFRLL--SRQKE 596
            G  + +  L+    +     A   S     +           +        L       
Sbjct: 70  MGKFDEVAMLELLSANPISNTAAYLSEIKAKSSKRALATLATEIKKVTIEDDLPAEEVMN 129

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +EK++ ++T     E       I   +  +I+++++
Sbjct: 130 LVEKKLYEITQNNTNEDFRESKEITLAMMDEINRLKA 166


>gi|294777886|ref|ZP_06743330.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|294448340|gb|EFG16896.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 288

 Score = 51.0 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I++    I + + +    Y    +R  +      W   PF  EK  SF  +  K  +Y F
Sbjct: 3  IQEAKN-IRLIDFLSGLGYNPVIQRGNDV-----WYKSPFRTEKEASFKVDLHKEVWYDF 56

Query: 66 SCHVKGDHLSFLSAL 80
               GD ++    +
Sbjct: 57 GLGRGGDIITLAKEI 71


>gi|167771754|ref|ZP_02443807.1| hypothetical protein ANACOL_03126 [Anaerotruncus colihominis DSM
           17241]
 gi|167666394|gb|EDS10524.1| hypothetical protein ANACOL_03126 [Anaerotruncus colihominis DSM
           17241]
          Length = 173

 Score = 51.0 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
            Y+CF C   GD + F +AL G    E+  +LA   G+   
Sbjct: 6   RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLSYE 46


>gi|26990598|ref|NP_746023.1| phage DNA helicase, putative [Pseudomonas putida KT2440]
 gi|24985581|gb|AAN69487.1|AE016583_11 phage DNA helicase, putative [Pseudomonas putida KT2440]
          Length = 465

 Score = 51.0 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 53/150 (35%), Gaps = 9/150 (6%)

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP---EEI 537
              E  ++ +L++ P++++    +++ + +   +  +L+S + +     +   P    +I
Sbjct: 10  EEAEFGVIGSLMHQPSLIETIGAKISPMHFHQQDAAELFSMILAARSAGRPADPVSLADI 69

Query: 538 HQRLCERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-----ALALYKRFRLL 591
              L       +   ++ R        +      +   +           + L  + R +
Sbjct: 70  RPTLSNGEMTLVRAAEIMRNTVSVANANEYARIVVERSKARVVNDLGQTIINLASQARPI 129

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
           ++   E+++    + ++ +      L   L
Sbjct: 130 AQIIAEVQEAALSLNSEDDEPDVITLAEAL 159


>gi|154500255|ref|ZP_02038293.1| hypothetical protein BACCAP_03921 [Bacteroides capillosus ATCC
           29799]
 gi|150270987|gb|EDM98261.1| hypothetical protein BACCAP_03921 [Bacteroides capillosus ATCC
           29799]
          Length = 310

 Score = 51.0 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 5/119 (4%)

Query: 68  HVKGDHLSFLSALLGCSFIESVQRL---AAIAGVPLPVVDPKIEKKEKIQT--DLIRLIE 122
            + GD ++FL      SF+E+V+ L      A    PV  P+  K+++ +    L     
Sbjct: 63  GIGGDAITFLQRFYNKSFLEAVEYLLTWHGRARDSPPVSTPRQTKEKEEKVPFTLPPANV 122

Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
                F +  K     ++     E G+     +     +    +        Q+G  + 
Sbjct: 123 DHRRVFAYLRKRGIAPQVIQGFVEAGLLYEDAQHHNCVFVGRDQSGAPVFANQRGTYDW 181


>gi|297587963|ref|ZP_06946607.1| replicative DNA helicase DnaB [Finegoldia magna ATCC 53516]
 gi|297574652|gb|EFH93372.1| replicative DNA helicase DnaB [Finegoldia magna ATCC 53516]
          Length = 445

 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E +++  +I     + +  + +  I + + + Q+++  +     E+K      +  +L 
Sbjct: 14  AERSVIGAMIIDERAVDDAAEIVEPIDFYSTKYQEIYKAILQVIDEKKPVDYITLEDKLK 73

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                E++  +D  +  +    +          + Y   +      R L R  +++    
Sbjct: 74  SNNMYEIIGGIDELISISEAVGSAVNV------KYYADIIKSKAIIRNLMRVSQDVIDMS 127

Query: 603 AQVTAKGEAEKTAI 616
               + GE  + A 
Sbjct: 128 IANNSVGEVLEYAE 141


>gi|206602881|gb|EDZ39362.1| DnaB helicase [Leptospirillum sp. Group II '5-way CG']
          Length = 463

 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 64/185 (34%), Gaps = 21/185 (11%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
               ++     K   +    E + L +++ +  +L E    L +  +  +  +K++  + 
Sbjct: 2   SPGGKTRAQILKNLPQSLEAEKSFLGSILLNNEVLTEIGDALKEDDFSLDAHRKIYMTMR 61

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGEL------LKQL-------------DRQVRDAGLWS 564
               ++       +   L ++G+  L      +++L                +++ G++ 
Sbjct: 62  EMSEKRVPVDSVTLADALNKKGWSGLTGGPTYIEELSLIVPTAANAKHYANLLKEKGIYR 121

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI--EKQIAQVTAKGEAEKTAILISILH 622
               +     R+GY+++  +     L  R+  EI   +        G+ +        L 
Sbjct: 122 KLILSAEEIARKGYEESEDIEVLLDLAERKILEIGSNRTTRGFVKVGDVQYIEAQYKRLE 181

Query: 623 EVHIQ 627
           E+  +
Sbjct: 182 ELRAR 186


>gi|148687362|gb|EDL19309.1| cut-like 1 (Drosophila), isoform CRA_b [Mus musculus]
          Length = 1519

 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 100/284 (35%), Gaps = 20/284 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + E + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 94  DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 153

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q   ++        ++  ++   +   +          KL +     +   L T +   
Sbjct: 154 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQT--LQTALEKT 211

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +     +E++ + + L   +   E      E + ++L        L 
Sbjct: 212 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 271

Query: 552 QLDRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
              ++               +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 272 SQIQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 331

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q+    +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 332 QLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 375


>gi|17228074|ref|NP_484622.1| replicative DNA helicase [Nostoc sp. PCC 7120]
 gi|21759099|sp|Q8YZA1|DNAB_ANASP RecName: Full=Replicative DNA helicase; Contains: RecName:
           Full=Endonuclease PI-AspHIP; AltName: Full=Asp dnaB
           intein
 gi|17129923|dbj|BAB72536.1| replicative DNA helicase [Nostoc sp. PCC 7120]
          Length = 879

 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 10/140 (7%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +L  +    E A+L  ++  P  +    + L    +  +  + ++        + K   
Sbjct: 13  NRLPPQNIEAEEAILGGILLDPEAIGRVSEVLITEAFYISAHRDIYQAALRLHAQGKPTD 72

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +   L +    ELL ++  + + A L   T  A  +D   G           + L R
Sbjct: 73  LLSVTSWLTDN---ELLTRIGGRNKLATLVDRTVSAVNIDALAGLVME-------KYLRR 122

Query: 594 QKEEIEKQIAQVTAKGEAEK 613
           Q  +   +I  +  + E E 
Sbjct: 123 QLIKAGNEIVHLGYETEKEL 142


>gi|332995423|gb|AEF05478.1| replicative DNA helicase [Alteromonas sp. SN2]
          Length = 461

 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 49/142 (34%), Gaps = 10/142 (7%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           S     +++ K K+       E ++L +++  P    +  + + D  + N   Q ++S +
Sbjct: 3   SPPKGDNNVEKLKVPPHSIEAEQSVLGSMLIDPESWDKVAELVTDTDFYNRSHQTIYSAI 62

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                         + + L +        +L+     A L               Y Q +
Sbjct: 63  TRLLNRSAPVDLITVSEELEKH------DELENAGGFAYLGELAKNTPSSANVVSYAQII 116

Query: 583 ALYKRFRLLSRQKEEIEKQIAQ 604
           +     R ++R+   +  +IA+
Sbjct: 117 S----ERAITRELIGVAHEIAE 134


>gi|256751484|ref|ZP_05492362.1| replicative DNA helicase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749703|gb|EEU62729.1| replicative DNA helicase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 444

 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 52/149 (34%), Gaps = 10/149 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K+  +    E ++L +++     + +  + +    +     +KL+  +   F +     
Sbjct: 4   SKIPPQNIEAEQSVLGSMLLSRDAIIDVSEIIKADDFYKESHKKLFDVMMEMFEKDIPVD 63

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +   L +R   E +  +D     +     T   +            A   + +   R
Sbjct: 64  LVTVVDELRKRNMLEAVGGIDYIASLSSNVITTANVS----------YYAKLIKEKATLR 113

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILH 622
           +  E   +I +++ +G+  +T + I+   
Sbjct: 114 RLIEASSEIMELSYEGDDVETVLDIAEQK 142


>gi|307265467|ref|ZP_07547023.1| replicative DNA helicase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326391785|ref|ZP_08213304.1| replicative DNA helicase [Thermoanaerobacter ethanolicus JW 200]
 gi|306919581|gb|EFN49799.1| replicative DNA helicase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325992173|gb|EGD50646.1| replicative DNA helicase [Thermoanaerobacter ethanolicus JW 200]
          Length = 442

 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 52/149 (34%), Gaps = 10/149 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K+  +    E ++L +++     + +  + +    +     +KL+  +   F +     
Sbjct: 4   SKIPPQNIEAEQSVLGSMLLSRDAIIDVSEIIKADDFYKESHKKLFDVMMEMFEKDIPVD 63

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +   L +R   E +  +D     +     T   +            A   + +   R
Sbjct: 64  LVTVVDELRKRNMLEAVGGIDYIASLSSNVITTANVS----------YYAKLIKEKATLR 113

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILH 622
           +  E   +I +++ +G+  +T + I+   
Sbjct: 114 RLIEASSEIMELSYEGDDVETVLDIAEQK 142


>gi|226228183|ref|YP_002762289.1| ATP-dependent Lon protease [Gemmatimonas aurantiaca T-27]
 gi|226091374|dbj|BAH39819.1| ATP-dependent Lon protease [Gemmatimonas aurantiaca T-27]
          Length = 847

 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 5/140 (3%)

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKY---FLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +E+  +   +   + L         E         E +HQ L           L     +
Sbjct: 112 EEMMPLDLKDPAFEALHKEARERAAELGEKRGLPEEVVHQVLDSVEDAGRFADLVAGYIE 171

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
             +         + V +  ++ L   +R   L   +E+I+ Q+ +    GE ++   L  
Sbjct: 172 LTVPEKQGLLETLSVEERLRRVLVHVQRQIGLLEAQEDIKSQVQE--ELGERQREMFLRE 229

Query: 620 ILHEVHIQIHQIESQEAMIE 639
            L  +  ++   +S + +IE
Sbjct: 230 QLKAIQKELGDDDSSKEIIE 249


>gi|326796488|ref|YP_004314308.1| replicative DNA helicase [Marinomonas mediterranea MMB-1]
 gi|326547252|gb|ADZ92472.1| replicative DNA helicase [Marinomonas mediterranea MMB-1]
          Length = 457

 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 3/130 (2%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             S+   KL       E +++  L+  P       + +    +   E  +++S +     
Sbjct: 4   DDSVASIKLPPYSIEAERSVVGGLMLDPEAWDRVSELVVADDFYRPEHNRIFSVIAKLAD 63

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E +      I +RL +RG    L+ +        +  AT  A  +       +  AL +R
Sbjct: 64  EVEPIDVVTIGERLDKRG---ELEDVGGMAYLIEMVEATPSAANIASYADIVRERALLRR 120

Query: 588 FRLLSRQKEE 597
               + +  +
Sbjct: 121 LISTTNEITD 130


>gi|325279892|ref|YP_004252434.1| DNA primase [Odoribacter splanchnicus DSM 20712]
 gi|324311701|gb|ADY32254.1| DNA primase [Odoribacter splanchnicus DSM 20712]
          Length = 328

 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 17/47 (36%)

Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79
                 W   P  +E+ PSF  N  +  +Y F     G+ L+    
Sbjct: 24 KQQGNSLWYKSPLREEQEPSFKVNTDRNLWYDFGAGKGGNILALAQE 70


>gi|225020023|ref|ZP_03709215.1| hypothetical protein CORMATOL_00019 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224947158|gb|EEG28367.1| hypothetical protein CORMATOL_00019 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 473

 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 3/116 (2%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +        E  +L  ++  P ++ +  + L    +     Q +++ +   F   K   P
Sbjct: 35  RQPPHDIDAEQGVLGAMLLSPTLVVDIIETLVPDDFYRPAHQLIYNAIIDLFSNNKEIDP 94

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             +  RL        L+++        L SA   A             A+ +R   
Sbjct: 95  LIVAGRLDR---DNNLERIGGSTYLHTLVSAVPTAANARYYAEIVAEKAVLRRLVA 147


>gi|288817930|ref|YP_003432277.1| replicative DNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|288787329|dbj|BAI69076.1| replicative DNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|308751528|gb|ADO45011.1| replicative DNA helicase [Hydrogenobacter thermophilus TK-6]
          Length = 466

 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 51/146 (34%), Gaps = 11/146 (7%)

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLP 534
                 L E A+L  +I  P  + +  + L +  +     + L+S L+  + +  K +  
Sbjct: 7   EPPHDELAERAVLGAMILDPETIPQVLEYLREEDFYLEHHRLLFSLLYKLWEDKGKDWDD 66

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + +   G  + +         A +++   EA    + +   +A+ L K    L   
Sbjct: 67  IVLREYIKRYGLSDKID-------MAFVYALVEEAAKGALLE---EAINLVKEKSGLRNL 116

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISI 620
            +     +  +  + +  +    +  
Sbjct: 117 LDLSLNALKGIKEEPDFNRLLEFMLH 142


>gi|126660356|ref|ZP_01731469.1| DnaB helicase [Cyanothece sp. CCY0110]
 gi|126618387|gb|EAZ89143.1| DnaB helicase [Cyanothece sp. CCY0110]
          Length = 445

 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 63/185 (34%), Gaps = 15/185 (8%)

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
           +   L  +    E ++L  ++  P  +      +    +     ++++      + + + 
Sbjct: 3   INQTLPPQNIEAEESILGGILLDPEAMGRVVDLMNPEAFYVQSHKEIYQAALKLYGQGQP 62

Query: 532 FLPEEIHQRLCER-------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                +   L +        G  +L + LDR V    +    T      +R+    A   
Sbjct: 63  TDFLTVKSTLDDHHLLEQVGGLNKLTQLLDRTVSAVNIDRYATLVMDKYLRRQLIAAGHE 122

Query: 585 YKRF-----RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM-- 637
                    + L    +E EK+I  +T K   E    +   + +   ++ ++  Q A+  
Sbjct: 123 IVDLGFETTQALEIVLDESEKKIFALTQKRPQEGLIPISDTIIKTFNELEKLHEQTALPG 182

Query: 638 IE-GF 641
           IE GF
Sbjct: 183 IETGF 187


>gi|152997464|ref|YP_001342299.1| replicative DNA helicase [Marinomonas sp. MWYL1]
 gi|150838388|gb|ABR72364.1| replicative DNA helicase [Marinomonas sp. MWYL1]
          Length = 458

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 3/124 (2%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
           +L  S +   KL       E +++  L+  P   ++  + +    +   E + +++ +  
Sbjct: 2   QLNDSEVASIKLPPYSIEAERSVVGGLMLDPQAWEKVSELVIADDFYRPEHKAIFTVIAR 61

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
              E +      I +RL +RG    L+ +        +  AT  A+ +       +  ++
Sbjct: 62  LADESEPIDVVTIGERLDKRGD---LESIGGMAYLIEVAEATPSASNIASYADIVRERSI 118

Query: 585 YKRF 588
            +R 
Sbjct: 119 LRRL 122


>gi|167040998|ref|YP_001663983.1| replicative DNA helicase [Thermoanaerobacter sp. X514]
 gi|300913792|ref|ZP_07131109.1| replicative DNA helicase [Thermoanaerobacter sp. X561]
 gi|307725522|ref|YP_003905273.1| replicative DNA helicase [Thermoanaerobacter sp. X513]
 gi|166855238|gb|ABY93647.1| replicative DNA helicase [Thermoanaerobacter sp. X514]
 gi|300890477|gb|EFK85622.1| replicative DNA helicase [Thermoanaerobacter sp. X561]
 gi|307582583|gb|ADN55982.1| replicative DNA helicase [Thermoanaerobacter sp. X513]
          Length = 442

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 52/149 (34%), Gaps = 10/149 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K+  +    E ++L +++     + +  + +    +     +KL+  +   F +     
Sbjct: 4   SKIPPQNIEAEQSVLGSMLLSRDAIIDVSEIIKADDFYKESHKKLFDVMMEMFEKDIPVD 63

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +   L +R   E +  +D     +     T   +            A   + +   R
Sbjct: 64  LVTVVDELRKRNMLEAVGGIDYIASLSSNVITTANVS----------YYAKLIKEKATLR 113

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILH 622
           +  E   +I +++ +G+  +T + I+   
Sbjct: 114 RLIEASSEIMELSYEGDDVETVLDIAEQK 142


>gi|32451885|gb|AAH54565.1| LOC407638 protein [Danio rerio]
          Length = 910

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 104/316 (32%), Gaps = 31/316 (9%)

Query: 333 KAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETEN 392
           K ++     L         +  +  D    ++   K A E L  +   + +M    +   
Sbjct: 195 KEMEKYKIQLEQLQEWRSKMQEQQNDLQKQLKEAKKEAREALEAKDRYMEEMADTADAIE 254

Query: 393 RSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452
            +    +   E    L+     +K++           + L    +    E    G     
Sbjct: 255 MATLDKEMAEERAESLQQETESLKEKL----------EELTMDMEILKHEIEEKGSDGAA 304

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPAILQEQYQEL-AD 507
           ++ H  Q       ++ +LV+ +       +E   L   +         L+ Q ++L  +
Sbjct: 305 SSYHVKQLEEQNARLKEALVRMRDLSSSEKQEHVKLQKQMEKKNSELETLRSQKEKLQEE 364

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSA 565
           ++   + + +L   + +          EE+ + L ER     E +++L   V D    + 
Sbjct: 365 MKLAEDTIDELKEQVDAALGA------EEMVETLTERNLDLEEKVRELRETVSDLESINE 418

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA-----EKTAILISI 620
             +    + R+     L L ++  L   +  E +K++               K   L + 
Sbjct: 419 MNDELQENARET---ELELREQLDLAGARVREAQKRVEAAQETLADYQQTINKYRELTTH 475

Query: 621 LHEVHIQIHQIESQEA 636
           L EV+ ++   +S  A
Sbjct: 476 LQEVNRELTNQQSSSA 491



 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 80/242 (33%), Gaps = 20/242 (8%)

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
                  +++ LR    + + ++L+ L  K   + +      K   +    +    ++ +
Sbjct: 158 APATPSKEEESLRAQ-LKDLEEKLETLRMKRSEDKAKLKEMEKYKIQLEQLQEWRSKMQE 216

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                 K  K+        L     +   + +    +     D          +  +  E
Sbjct: 217 QQNDLQKQLKEAKKEAREALEAKDRYMEEMADTADAIEMATLD--------KEMAEERAE 268

Query: 529 QKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                 E + ++L E     E+LK    +    G  S+     + +     ++AL   + 
Sbjct: 269 SLQQETESLKEKLEELTMDMEILKHEIEEKGSDGAASSYHVKQLEEQNARLKEALVRMRD 328

Query: 588 FRLLSRQKE-EIEKQIAQVTAKGE-----AEKTAILISI----LHEVHIQIHQIESQEAM 637
                +Q+  +++KQ+ +  ++ E      EK    + +    + E+  Q+      E M
Sbjct: 329 LSSSEKQEHVKLQKQMEKKNSELETLRSQKEKLQEEMKLAEDTIDELKEQVDAALGAEEM 388

Query: 638 IE 639
           +E
Sbjct: 389 VE 390


>gi|58700258|ref|ZP_00374733.1| DNA primase [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533225|gb|EAL57749.1| DNA primase [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 132

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 16/147 (10%)

Query: 90  QRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGI 149
           ++LA++ GV LP      ++  K    L   +++A ++F        ++ +  YL +R I
Sbjct: 2   EKLASVTGVELPKNLSITKEDNK----LFLALDLAANWFAQK-----NQGVVDYLKQRKI 52

Query: 150 DSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFP 209
               I+ FK+GYAP S   L+E+L   G  +  +I+ GL+          D F +RLIFP
Sbjct: 53  SPKIIDKFKIGYAPSS--GLKEYLNSSGIEDRILIDIGLVNKN-----FRDYFYDRLIFP 105

Query: 210 IRSSRGQVIAFGGRTLSKGESVKYLNS 236
           I+S  G+VI FGGR LS  +  KYLN 
Sbjct: 106 IQSIAGRVIGFGGRVLSSEQQPKYLNM 132


>gi|281426088|ref|ZP_06257001.1| putative mobilizable transposon, excision protein [Prevotella
          oris F0302]
 gi|281399812|gb|EFB30643.1| putative mobilizable transposon, excision protein [Prevotella
          oris F0302]
          Length = 303

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 4/68 (5%)

Query: 8  IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
          I  +   I + + +      D +       +     P   EK  SF  N     +Y F  
Sbjct: 3  IDQIK-KIKLQDFLA---TIDCKPVKQYGVNLMYLSPLRTEKHASFKVNTELNLWYDFGI 58

Query: 68 HVKGDHLS 75
             G+ + 
Sbjct: 59 GRGGNIID 66


>gi|303242894|ref|ZP_07329355.1| ATP-dependent chaperone ClpB [Acetivibrio cellulolyticus CD2]
 gi|302589569|gb|EFL59356.1| ATP-dependent chaperone ClpB [Acetivibrio cellulolyticus CD2]
          Length = 864

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/207 (12%), Positives = 77/207 (37%), Gaps = 6/207 (2%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R ++     +     +  +++    + ++     + + A++   +   
Sbjct: 321 YRKYIEKDAALERRFQPILVDQPTVEDTISILRGLKERFEIHHGVRITDNAIIACAVLSN 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +     + + + S   E        +   +  +   +      +
Sbjct: 381 RYISDRFLPDKAIDLMDEAAAMIRTEIDSMPTELDEISRRIMQLEIERQALRKEEDISSK 440

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +          +  +  D  +   +      KR + L +Q E+I++QI +     + +K 
Sbjct: 441 ERLGVLEKEIASLKDRADTMKAQWELEKQNIKREKDLKQQIEDIKRQIEEAERNYDLDKL 500

Query: 615 AIL----ISIL-HEVHIQIHQIESQEA 636
           A+L    +  L  ++  +  +I+S EA
Sbjct: 501 AVLKHGKMPDLEKQLESEKQRIKSSEA 527


>gi|167038647|ref|YP_001666225.1| replicative DNA helicase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320117039|ref|YP_004187198.1| replicative DNA helicase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166857481|gb|ABY95889.1| replicative DNA helicase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319930130|gb|ADV80815.1| replicative DNA helicase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 442

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 52/149 (34%), Gaps = 10/149 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K+  +    E ++L +++     + +  + +    +     +KL+  +   F +     
Sbjct: 4   SKIPPQNIEAEQSVLGSMLLSRDAIIDVSEIIKADDFYKESHKKLFDVMMEMFEKDIPVD 63

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +   L +R   E +  +D     +     T   +            A   + +   R
Sbjct: 64  LVTVVDELRKRNMLEAVGGIDYIASLSSNVITTANVS----------YYAKLIKEKATLR 113

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILH 622
           +  E   +I +++ +G+  +T + I+   
Sbjct: 114 RLIEASSEIMELSYEGDDVETVLDIAEQK 142


>gi|269129125|ref|YP_003302495.1| replicative DNA helicase [Thermomonospora curvata DSM 43183]
 gi|268314083|gb|ACZ00458.1| replicative DNA helicase [Thermomonospora curvata DSM 43183]
          Length = 939

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 45/149 (30%), Gaps = 10/149 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +        E ++L  ++     + E  + L    +     Q L+  +   +   +    
Sbjct: 13  RTPPHDLAAEQSVLGGMLLSANAIAEVVEILRPSDFYRPAHQILFDTILELYGRGEPADA 72

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L  RG      +++R      L +             Y + +    R R + R+
Sbjct: 73  VTVVAELTRRG------EINRVGGAPYLHTLMATVPTAANAAYYAKIV----RERAVLRK 122

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHE 623
             E+  +I Q+    +      ++     
Sbjct: 123 LVEVGTRIVQLGYSSDGADADEILDRAQA 151


>gi|157875983|ref|XP_001686356.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68129430|emb|CAJ07973.1| hypothetical protein LMJF_34_2530 [Leishmania major strain Friedlin]
          Length = 4395

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 92/289 (31%), Gaps = 23/289 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            D   R +G          +             +      ++    E  L+     +KD K
Sbjct: 3976 DEACRLFGDADAVSAEGVAKLEAFAEVLAAARDTEKAAMEQLEAKESELEELRTALKDAK 4035

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +     + + D ++QL ++     +  G   K+    R     ++        +      
Sbjct: 4036 VWEEMRENLEDEVKQLQKEKEITETELGALQKEMNDLRYDLRAAEDRAAEKARE------ 4089

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                E   L       ++       L ++    ++  ++   L      Q +   +E+ Q
Sbjct: 4090 ---VERMTLDL----DSLNNRIQDLLEELEEKTDQYNQVIKDLDDFANNQSHETEKELLQ 4142

Query: 540  RLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----RFRLLSR 593
            RL   E+   EL +    +  +        +  I  +R    Q   L+         L +
Sbjct: 4143 RLAACEQELFELQEARRGENDEHEKQVGVLQDQINRLRNQTDQDNTLHNGLQDELARLRK 4202

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
               + E  +   +A+ EA     + +++ E   Q+ ++E +   +EG G
Sbjct: 4203 LLLDAEAALRDKSAENEA-LKDDMENMIDEHEAQMREMEQE---LEGKG 4247


>gi|317152938|ref|YP_004120986.1| replicative DNA helicase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943189|gb|ADU62240.1| replicative DNA helicase [Desulfovibrio aespoeensis Aspo-2]
          Length = 481

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 49/187 (26%), Gaps = 14/187 (7%)

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
           +  +  A   D          SS +  KL  +    E A++  +     +  E    +  
Sbjct: 8   KQQRPRAGQYDSHSEEALERASSDLLRKLPPQNLEAEQAVIGGVFQSNTMFHELVDIIDA 67

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLKQLDRQV 557
             + +   + ++      +  QK      +  +L   G            EL   +    
Sbjct: 68  DDFYSPAHRTIFQAFIELYNRQKPIDLVTVKDQLETSGTLETIGGPVYLFELADSVFSAA 127

Query: 558 RDAGLWSATTEANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQ---IAQVTAKGEAEK 613
                     +  I+  +       +        +     E EKQ   IAQ         
Sbjct: 128 NAMHHAKIVRDKAILRRLIDASSTIITNCYEAGDVDELLGESEKQIFNIAQSKGNANQID 187

Query: 614 TAILISI 620
           +  L+  
Sbjct: 188 SKRLLDR 194


>gi|242279496|ref|YP_002991625.1| replicative DNA helicase [Desulfovibrio salexigens DSM 2638]
 gi|242122390|gb|ACS80086.1| replicative DNA helicase [Desulfovibrio salexigens DSM 2638]
          Length = 475

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/205 (10%), Positives = 57/205 (27%), Gaps = 11/205 (5%)

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
            +   K     D          SS +  K+       E A+L  +     I  +    + 
Sbjct: 2   QKKQLKRKLGSDYNSGGASNDASSDLLRKVPPHNLEAEQAVLGGVFLSNTIFNDLVDIVK 61

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLKQLDRQ 556
              + +   Q+++      +          + + L  +             EL   +   
Sbjct: 62  SDDFYSPAHQEIFRAFEDLYGRNAPIDLITVSEYLTAKDKIDSVGGPVYLAELANSVVSS 121

Query: 557 VRDAGLWSATTEANIVD-VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
                      E +I   +       +      + +    +  E+ I  +T   +     
Sbjct: 122 ANALHHAEIVAEKSIQRSLIDTAANIINESFEAQDVKELLDHSEQAIFDITDNKKNTTIK 181

Query: 616 ILISILHEVHIQIHQIESQEAMIEG 640
              +++ EV   +    +Q++++ G
Sbjct: 182 GSKALIQEVFQDLENRVAQKSLVTG 206


>gi|192824052|ref|YP_001994514.1| gp56 [Mycobacterium phage KBG]
 gi|190610282|gb|ACE79804.1| gp56 [Mycobacterium phage KBG]
          Length = 136

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAI 95
            C  H +  PS   +     + C  C  KG  +S L      S   +++ LA  
Sbjct: 32 CLCWAHADTRPSAAVSYKLNAFACLGCGTKGSAISLLMKREEVSHHRALE-LAQE 85


>gi|309776771|ref|ZP_07671745.1| replicative DNA helicase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915519|gb|EFP61285.1| replicative DNA helicase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 448

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 54/163 (33%), Gaps = 14/163 (8%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWSFLFSDFVEQKYF 532
            +     +  E ++L  ++ +P++    Y + L    +  +  Q+++S +       K  
Sbjct: 2   SRELPHSTEAEQSILGAMMIYPSVTSVVYDQGLDARDFYLDIHQRIFSAMMDITDSGKPV 61

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               +  RL +      ++QL   V  A      ++  I      Y        + R   
Sbjct: 62  DVTTLIARLQD------IEQL-NLVGGADYIIKLSDTAISSANSVY---YIEMIKSRAHL 111

Query: 593 RQKEEIEKQIAQV--TAKGEAEKTA-ILISILHEVHIQIHQIE 632
           R+  E  +QIA+       + ++        +  V       +
Sbjct: 112 RRLIEAAEQIAEDGFDTANDLDEIMDKAERDILNVTRSRRATD 154


>gi|295103822|emb|CBL01366.1| CHC2 zinc finger. [Faecalibacterium prausnitzii SL3/3]
          Length = 138

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLI 118
            ++CF+C   GD + F+  L   S  ++V++L    G+ L     ++  +     +  L+
Sbjct: 6   RFHCFACQADGDVIDFVGRLFQLSPYKAVEKLKEDFGMALADGKVRLAPRRPPTVRQQLL 65

Query: 119 RLIEVATDF 127
                   +
Sbjct: 66  DYYRCLQRW 74


>gi|21230001|ref|NP_635918.1| hypothetical protein XCC0526 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766877|ref|YP_241639.1| hypothetical protein XC_0538 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21111518|gb|AAM39842.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572209|gb|AAY47619.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 903

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 99/337 (29%), Gaps = 29/337 (8%)

Query: 316 RIVLCFDGDDPGLRA---AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFE 372
           RIVL  DGD  G R+   A          L         L S  +     ++        
Sbjct: 281 RIVLRRDGDLAGERSGPLAQIHDVFRNFALANDKDGRGALRSDTK---IQVKLNKDGQAM 337

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI----NHIKDQKLRYYYSQAI 428
            +  +    +  + +    + S        +   +           I     +  Y   +
Sbjct: 338 AVAWDKRSGLTTIEEHTGSDWSPVPEQIDDDYVRNRFPVTVLSQKQIYALAEQRGYLLEL 397

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            DR     Q  + +     R+     R    +  +++L      +  L  +    E  L 
Sbjct: 398 LDR-----QPQVDKAQWQRRFDAMRQRFLGLRAQARQLAPDLSQRPALEAELRDTERKLK 452

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              ++H A   + YQ           L   W                ++ +R+   GF +
Sbjct: 453 ALELSHHASSLQAYQRARRQLSAQQNLLAQWQSDLESMR--PVVEDSDLFRRIEFEGFDQ 510

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA----------LALYKRFRLLSRQKEEI 598
                   +       +    +   +R    Q            A  +    +++ + + 
Sbjct: 511 ATGDEAEFIGLVEQVESELRGHYEQIRTAVSQIEATLATTPARFAALRLQVAITQAQADY 570

Query: 599 EKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIES 633
           +  + ++ ++G    ++ A L++   E+  ++ ++++
Sbjct: 571 QALLERLKSQGVESPDQYAALVARRDELQKELKRLDA 607


>gi|71897355|ref|NP_001026538.1| dynactin subunit 1 [Gallus gallus]
 gi|14916981|sp|P35458|DCTN1_CHICK RecName: Full=Dynactin subunit 1; AltName: Full=150 kDa
           dynein-associated polypeptide; AltName: Full=DAP-150;
           Short=DP-150; AltName: Full=p150-glued
 gi|6065857|emb|CAA44617.2| dynactin [Gallus gallus]
          Length = 1224

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 96/301 (31%), Gaps = 18/301 (5%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D       Y +   +      +  +D     E         D   E   +L   + 
Sbjct: 274 KEAKDALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVDSLKEKVEYLTMDLE 333

Query: 414 HIKDQKLRY--------YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQ 464
            +K +            Y  + + ++  +L +  +           +     +  +  + 
Sbjct: 334 ILKHEIEEKGSDGAASSYQVKQLEEQNARLKEALVRMRDLSASEKQEHVKLQKQMEKKNT 393

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSF 521
            L      + KL ++    E  +        A L  +E  + L +   D  E +++L   
Sbjct: 394 ELESLRQQREKLQEEVKQAEKTVDELKEQVDAALGAEEMVETLTERNLDLEEKVRELRET 453

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +       +     + + R  E    E L     +VR+A       +  + D +Q  ++ 
Sbjct: 454 VGDLEAMNEMNDELQENARETELELREQLDLAAARVREAEKRVEAAQETVADYQQTIKKY 513

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQE 635
             L    + ++R+    ++  A+   +   E      K A   +    + +++ Q+E Q+
Sbjct: 514 RELTAHLQDVNRELMSQQEASAEKQQQPPPEIFDFKIKFAETKAHAKAIEMELRQMEVQQ 573

Query: 636 A 636
           A
Sbjct: 574 A 574



 Score = 37.9 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 74/239 (30%), Gaps = 28/239 (11%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +++ LR    + + ++L+ L  K   + +      K   +    +    ++ +      +
Sbjct: 209 EEENLRSQ-VRDLEEKLETLKIKRNEDKAKLKELEKYKIQLEQVQEWKSKMQEQQADLQR 267

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQ 529
             K+        L     +   + +    +     D        + L   +    + VE 
Sbjct: 268 RLKEAKKEAKDALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVDSLKEKVEY 327

Query: 530 KYFLPEEIHQRLCERGFG---------ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
                E +   + E+G           +L +Q  R           + +   +  +  +Q
Sbjct: 328 LTMDLEILKHEIEEKGSDGAASSYQVKQLEEQNARLKEALVRMRDLSASEKQEHVKLQKQ 387

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                     L +Q+E++++++ Q     +            E+  Q+      E M+E
Sbjct: 388 MEKKNTELESLRQQREKLQEEVKQAEKTVD------------ELKEQVDAALGAEEMVE 434


>gi|262382294|ref|ZP_06075431.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295172|gb|EEY83103.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 326

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 81/255 (31%), Gaps = 15/255 (5%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA-------I 95
            P  ++ TPSF  + +   +  +     G  +  +    GC+   ++ RL          
Sbjct: 34  SPLREDNTPSFKVDYNANLWCDYGTGEGGTLIDLVMKQNGCNAYGAICRLEQGDITSFSF 93

Query: 96  AGVPLPVVDPKIEKKEK-IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAI 154
            G  LP  D K +         +  L   A   +    +         Y+ E        
Sbjct: 94  HGKDLPERDTKRQAASPIEIRRIQPLHNPALMRYLQE-RGISPGTAAPYVQEMYYRIGGK 152

Query: 155 EMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF-PIRSS 213
             F L +  DS      + R KG + + I       +  ++   ++ F + L F  IR  
Sbjct: 153 PYFALAFKNDSGGYELRNPRFKGSTSKDITHIRQKGEPRDTCFVFEGFMDFLSFLTIRQQ 212

Query: 214 RGQVIAFG----GRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRN 269
           +   +          L+   +V     P     H    L N   A     ++IR++ +  
Sbjct: 213 KSPGMPCTDWQDYVILNSTANVDKALYPLAGYGHIHCMLDN-DEAGRKAVEAIRQEYKWR 271

Query: 270 SSSFIILVEGYMDVL 284
                 L  G+ D+ 
Sbjct: 272 VRDASHLYSGHNDLN 286


>gi|307127279|ref|YP_003879310.1| PcfD [Streptococcus pneumoniae 670-6B]
 gi|306484341|gb|ADM91210.1| PcfD [Streptococcus pneumoniae 670-6B]
          Length = 361

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 28/117 (23%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
           I++    I I ++            N +   +          P HD    SF    +   
Sbjct: 3   IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
           +  FS  ++GD + F+  + G SF E++  L+            +  ++ + +    
Sbjct: 47  FKWFSRDIQGDVIDFVQLVKGISFKEALAFLSK------EPFQKEAVQENRERPFYY 97


>gi|224089235|ref|XP_002191550.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 987

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 91/299 (30%), Gaps = 13/299 (4%)

Query: 340 CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399
                 +           +P   +        E        + +   K++         +
Sbjct: 625 QQWHVAHTQLLCAPEDHPEPRETLEYKAALELEMWKEMQEDIFENQLKKKEMVHMQALAE 684

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
           E  + E   ++ +   K         + ++  L+ L ++     S      +     +  
Sbjct: 685 EWKKREKERESLVK--KKVAEYNVLEEKLQKTLRDLDKRERQLFSAESEVQRVKKELQAD 742

Query: 460 KGPSQRLMQSSLVKGKLSKKPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
              + +++Q S+ + +      L  E + +  L      L++   +L +    +  LQK 
Sbjct: 743 HERNLQVLQDSMRRVREECAHQLELERSKIKQLEEDKHYLRQ---QLYEAENKHKTLQKE 799

Query: 519 WSFLFSDFVEQKYFLPEEIHQ--RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
           +         +     +       L +      L+   +               +  ++Q
Sbjct: 800 FQQYKEQQSSKPEIQLQSEINLLTLEKVELERKLESATKSKLHYKQQWTRALKELARLKQ 859

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             Q+    +     L RQ++E++    +  A  E E        L ++  ++++++ QE
Sbjct: 860 QEQENAMAH-----LKRQQQELKHMRLRYLAAEEKELGKTDRQELEDIRNELNRLKQQE 913


>gi|322798732|gb|EFZ20330.1| hypothetical protein SINV_15114 [Solenopsis invicta]
          Length = 501

 Score = 50.7 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 8/131 (6%)

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
               Q++     S  +E+       +     +     L+++L   V              
Sbjct: 298 TPLQQRIKQIASSHGLEEPNQEVAALISHAVQERLKNLVEKLA--VITEHRIDLIKVDPR 355

Query: 572 VDVRQGYQQALALYKRFRLLSRQK-----EEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            +V Q  +  L   +    L R+K      E+  + A+  AK E  + A L +   E+  
Sbjct: 356 YEVTQDVRGQLKFLEDLDRLERRKHEEQERELLLRAAKSRAKTEDPEQAKLKAKAKEMQR 415

Query: 627 -QIHQIESQEA 636
            ++ ++  +EA
Sbjct: 416 IEMEELRKKEA 426


>gi|328781544|ref|XP_001121819.2| PREDICTED: myosin-XVIIIa [Apis mellifera]
          Length = 2049

 Score = 50.7 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 92/275 (33%), Gaps = 15/275 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
            +++    ++  ++   ++  +    +        +   K   +  ++ + +       + 
Sbjct: 1459 YKQRYEHAVRELEFTKRKMAQQHEDDLEQLVGLKKQLEKKLADAYEEVEEQRQVVGQWKR 1518

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS---SLVKGKLSKKPSLREAAL 487
            R+Q+L  +             +N     ++       Q+    L + K  ++   RE  +
Sbjct: 1519 RVQKLNGEMHDLRLLLEEQTARNNLLEKKQRKFDSETQNLMNDLRQEKAQRERLAREKEI 1578

Query: 488  LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV----EQKYFLPEEIHQRLCE 543
               +     I Q       +I      L+ L   L         E++    ++    L +
Sbjct: 1579 --AIAEKFTIEQNLSDARLEIELKEERLRTLSQELEELTFGGKTEEEVAQLKKAKHELEK 1636

Query: 544  --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
              +   E L  L  QV+         E +I   R+  ++ +   +R   L   +    K+
Sbjct: 1637 RVKDQEEELDDLAGQVQLLEQAKLRLEMSIEQQRKEIRKEM--QQRDEELEDVRGNALKK 1694

Query: 602  IAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQ 634
            +  + ++ E E      L+   HE+  ++  IE Q
Sbjct: 1695 VKALESQLENEHEERTILLREKHELERRLVAIEEQ 1729



 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 91/251 (36%), Gaps = 31/251 (12%)

Query: 407  HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             + +    +++Q  R    +  + +     Q  + +        ++ AR ++     +  
Sbjct: 1526 EMHDLRLLLEEQTARNNLLEKKQRKFDSETQNLMNDLRQEKAQRERLAREKEIAIAEKFT 1585

Query: 467  MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS-----F 521
            ++ +L   +L     L+E  L           +   QEL ++ +     +++        
Sbjct: 1586 IEQNLSDARLE--IELKEERL-----------RTLSQELEELTFGGKTEEEVAQLKKAKH 1632

Query: 522  LFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVR---- 575
                 V+ +    +++  ++   E+    L   +++Q ++        +  + DVR    
Sbjct: 1633 ELEKRVKDQEEELDDLAGQVQLLEQAKLRLEMSIEQQRKEIRKEMQQRDEELEDVRGNAL 1692

Query: 576  ----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---LISILHEVHIQI 628
                    Q    ++   +L R+K E+E+++  +  +  AE+ A    +  +  ++    
Sbjct: 1693 KKVKALESQLENEHEERTILLREKHELERRLVAIEEQDRAERAAEAETMHRLKRDLKRTK 1752

Query: 629  HQIESQEAMIE 639
              +   + M+E
Sbjct: 1753 ALLRDAQTMLE 1763


>gi|166365309|ref|YP_001657582.1| replicative DNA helicase [Microcystis aeruginosa NIES-843]
 gi|166087682|dbj|BAG02390.1| replicative DNA helicase [Microcystis aeruginosa NIES-843]
          Length = 585

 Score = 50.7 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 12/173 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             L  +    E ++L  ++  P  L      L    +     Q ++    +   + K   
Sbjct: 5   QSLPPQNIEAEESILGGILLDPKALGRISDFLIPEAFYVKTHQDIYRAALALQGKGKPTD 64

Query: 534 PEEIHQRLCERGFGE-------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ---ALA 583
              +   L +    E       LL+ ++R V  A +           +R+        + 
Sbjct: 65  LMTVSSWLQDNYLLEEIGGMPRLLQLIERTVSAANIDRYAELVMDKYMRRQLISTGGEII 124

Query: 584 LYKRFRLLSRQK--EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              R   L  +   +E E++I ++T K   E    L   L E   +I +++  
Sbjct: 125 ELARDTTLELENVFDESEQKIFRLTQKRPQEGLIFLGDTLIETFNEIEKMQET 177


>gi|330959765|gb|EGH60025.1| putative DNA primase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 462

 Score = 50.7 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 59/370 (15%), Positives = 105/370 (28%), Gaps = 29/370 (7%)

Query: 81  LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----DLIRLIEVATDFFHHSLKNAR 136
            G S  + V+ L   AGV  P  +   E K+K +             A       L    
Sbjct: 82  NGMSNGDIVKALCESAGVEPP-DNRDNEAKQKARAANGGRPPLTTGQAIILVTQQLAQRN 140

Query: 137 DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSA 196
              L  +   RG  +  +   +LG   ++   L     Q    E+      +  D +N +
Sbjct: 141 KGILEEFQQSRGYTNEVMASLRLGVFTNNDEVLSLLQAQGITREQARSIGIVSFDDENPS 200

Query: 197 TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALN 256
           + +     R+I       G+   + GR             P      +    Y F     
Sbjct: 201 SVWSGMEGRVIGYWPHPDGEARIW-GRI------------PSGQGEARTNPKYRFS---P 244

Query: 257 YLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-WKLSP 315
              K I    ++   + ++ VEG +D  +L    V    +    ++   Q   L  +   
Sbjct: 245 KSSKDIPYLFKQRQKTILVCVEGTLDAWALQLIKV-WGCAIGQASINSAQAAYLASQGIT 303

Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375
                 DGD  G   A  +I         G  ++ + L RG D    +R  G+    K +
Sbjct: 304 EAAHMVDGDHAGYEGALSSIREAE---AVGITMSIIALGRGMDDADAMRTAGREEALKSL 360

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
           + S         R   +               ++     +     R +        L   
Sbjct: 361 INSRMNAGEYMARYCASLLDQPL-PDLRRIAKIRAIAYGLTSASKRKWL--DFSQSLGIA 417

Query: 436 FQKYITEHSG 445
             +       
Sbjct: 418 ADEESDALRA 427


>gi|327438189|dbj|BAK14554.1| replicative DNA helicase [Solibacillus silvestris StLB046]
          Length = 450

 Score = 50.7 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 61/178 (34%), Gaps = 12/178 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++    S  E +++  +   P  L    + +    + +   QK++  + +   + K    
Sbjct: 8   RVPPHNSEAEQSVIGAVFLEPQALITASEIVIADDFYHIAHQKIFQTMLNLSDQGKAIDL 67

Query: 535 EEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
             + + L  +             EL   +      A       E  I+         +A 
Sbjct: 68  VTVTEELSAKKELEDIGGLSYITELASAVPTAANIAHYAKIVEEKAILRRLIRVASKIAD 127

Query: 585 --YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             Y R   +     E EK++ +V+ +  A     +  +L +    I Q++S+E  + G
Sbjct: 128 DGYTREDEVEILLAEAEKKMLEVSNRKNAGDFKHVKDVLVQTFDNIEQLQSREGDVTG 185


>gi|319641223|ref|ZP_07995923.1| hypothetical protein HMPREF9011_01520 [Bacteroides sp. 3_1_40A]
 gi|317387156|gb|EFV68035.1| hypothetical protein HMPREF9011_01520 [Bacteroides sp. 3_1_40A]
          Length = 295

 Score = 50.7 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 19/87 (21%)

Query: 7  FIKDLLIHIPISNLIGQ------YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           I++    + I + + Q      YV             YW   P  DE++PSF  ND   
Sbjct: 2  TIEEAKQ-VRIVDFLAQLGHHAQYVK---------SDQYWYLSPLRDEQSPSFKVNDRLN 51

Query: 61 FYYCFSCHVKGDHL---SFLSALLGCS 84
           +Y F     GD +    +L      S
Sbjct: 52 EWYDFGAATGGDLVELGKYLYQTESVS 78


>gi|293370969|ref|ZP_06617511.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292633899|gb|EFF52446.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 319

 Score = 50.7 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
          Y    R+  N      W   PF +E   SF  N  +  +Y F+    G+ +
Sbjct: 20 YSPVKRQGINL-----WYKSPFREETEASFKVNTERNQWYDFALGKGGNII 65


>gi|163857364|ref|YP_001631662.1| replicative DNA helicase [Bordetella petrii DSM 12804]
 gi|163261092|emb|CAP43394.1| dnaB [Bordetella petrii]
          Length = 457

 Score = 50.7 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 62/197 (31%), Gaps = 15/197 (7%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
               S L   ++       E ++L  L+   +        L +  +  ++ + +W  +  
Sbjct: 3   NPADSQLDYLRVPPHSIEAEQSVLGGLLLDNSAWDRIADVLGEEDFYRHDHRLIWHHIAR 62

Query: 525 DFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDV---- 574
                +      +++ L   G  E       L  L      A       E          
Sbjct: 63  LVGLARPADVITVNESLVSAGKAEETGGLAYLNALAHNTPSAANIRRYAEIVRERAMLRK 122

Query: 575 ---RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIH 629
                    + AL  + +   +  +E E ++ ++  +GE        +  +L +V  +I 
Sbjct: 123 LVTIADEISSAALNPQGKEARQLLDEAESKVFKIAQEGEKGSVGFQEIQPLLTQVVERID 182

Query: 630 QIESQEAMIEGFGKMSG 646
           ++  +E   +  G  +G
Sbjct: 183 ELYHREGDSDVTGVPTG 199


>gi|221232049|ref|YP_002511201.1| hypothetical protein SPN23F_12670 [Streptococcus pneumoniae ATCC
           700669]
 gi|220674509|emb|CAR69070.1| putative uncharacterized protein [Streptococcus pneumoniae ATCC
           700669]
          Length = 361

 Score = 50.7 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 54/163 (33%), Gaps = 34/163 (20%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
           I++    I I ++            N +   +          P HD    SF    +   
Sbjct: 3   IEECK-KISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ------T 115
           +  FS  ++GD + F+  + G SF E++  L+            +  ++++ +       
Sbjct: 47  FKWFSRDIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAVQEKRERPFYYPLK 100

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158
            +         ++    +   ++ +   + +  +   + +  +
Sbjct: 101 RIEDSNCSLARYYLTECRGISEEIIQKMIQQGLMSQASWKTNE 143


>gi|4006911|emb|CAB16841.1| trichohyalin like protein [Arabidopsis thaliana]
 gi|7270600|emb|CAB80318.1| trichohyalin like protein [Arabidopsis thaliana]
          Length = 1432

 Score = 50.7 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 34/342 (9%), Positives = 103/342 (30%), Gaps = 15/342 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
               LL     ++               +    +    +          +  E    + +
Sbjct: 528 KHRNLLKPEENKLFTEKPAKQKKELLCEEKTKRIQNQQLDKKTHQKAAETNQECVYDWEQ 587

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K         +L +   L     +    +  + +    +        IK+ +LR   
Sbjct: 588 NARKLREALGNESTLEVSVELNGNGKKMEMRSQSETKLNEPLKRMEEETRIKEARLREEN 647

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +   +R+     +            +K  + ++ +  ++   ++   + K  ++  ++E
Sbjct: 648 DRR--ERVAVEKAENEKRLKAALEQEEKERKIKEAREKAENERRAVEAREKAEQERKMKE 705

Query: 485 AALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVE-------QKYFLP 534
              L   +      +++ +          +  + +++      +  E       +K  L 
Sbjct: 706 QQELELQLK--EAFEKEEENRRMREAFALEQEKERRIKEAREKEENERRIKEAREKAELE 763

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           + +   L +      +K+   +  +        E    + +          +R    +R+
Sbjct: 764 QRLKATLEQEEKERQIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETRE 823

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ-IESQE 635
           KEE +K++ +     E EK  I      E+  ++ + +E +E
Sbjct: 824 KEENKKKLREAIELEEKEKRLIEAFERAEIERRLKEDLEQEE 865


>gi|300791103|ref|YP_003771394.1| replicative DNA helicase [Amycolatopsis mediterranei U32]
 gi|299800617|gb|ADJ50992.1| replicative DNA helicase [Amycolatopsis mediterranei U32]
          Length = 469

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/71 (11%), Positives = 24/71 (33%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +   +    E ++L  ++     + +  + L    +     Q ++  +   +   +   P
Sbjct: 30  RQPPQDIAAEQSVLGGMLLSKDAVADVIEALGPDDFYRPAHQAIYDCILDLYGRGEPADP 89

Query: 535 EEIHQRLCERG 545
             +   L  RG
Sbjct: 90  ITVSAELERRG 100


>gi|256086971|ref|XP_002579655.1| myosin heavy chain [Schistosoma mansoni]
 gi|238665123|emb|CAZ35894.1| myosin heavy chain, putative [Schistosoma mansoni]
          Length = 1591

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 29/258 (11%)

Query: 400  ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
            +R ++E  +K     + D++ +      ++ ++    ++   +        +K  + +  
Sbjct: 888  QRGDMEQRIKELEERLADEEDQAANLTEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 947

Query: 460  KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
            K    R +QS + +         ++   L          +   + L       N L KL 
Sbjct: 948  KDNQIRTLQSEMAQQDEMIGKLNKDKKNLE------EQNKRTQEALQAEEDKVNHLNKLK 1001

Query: 520  SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568
            + L S   E +             E+  ++L    +   E +  L+R  RD        E
Sbjct: 1002 AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQLRRKE 1061

Query: 569  ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT---------AILIS 619
            A I  +   ++    L  +   L R+ +E++ +I ++    EAE+            L S
Sbjct: 1062 AEIGGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 1118

Query: 620  ILHEVHIQIHQIESQEAM 637
             L EV  ++ + +   A 
Sbjct: 1119 ELEEVVDRLEEQDGATAA 1136



 Score = 41.0 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 79/264 (29%), Gaps = 32/264 (12%)

Query: 402  AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
                  L+  I  +++       +++  ++ +Q  +  + E           A       
Sbjct: 1082 QRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLESELEEVVDRLEEQD-GATAAQSDL 1140

Query: 462  PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
              +R  +   +K  L       E A+          + E   +L        + +K  S 
Sbjct: 1141 TKKREAELMKLKRDLEDTRLQNEQAIATMRKKQSDAINELADQLDQANKAKAKAEKERSQ 1200

Query: 522  LFSDFVEQKYFLPEEIHQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVD 573
              ++  +    +   +  +L              E+  +LD   R+    ++T   +  +
Sbjct: 1201 FKAELDDAHNQVDSIMKAKLNSEKTVKALESQLQEVSVKLDEATRNLNEQASTKARSSQE 1260

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--------------------- 612
            V +  +Q      +   L++ K+++  Q+ +     E E                     
Sbjct: 1261 VSELQRQLEEAESQLSQLNKIKQQLSAQLEEARHSLEDESRMKAKLNGEVRNLTSDLDSL 1320

Query: 613  --KTAILISILHEVHIQIHQIESQ 634
                    S   ++  Q+ +++ +
Sbjct: 1321 RETLEEEQSAKGDLQRQLQKLQGE 1344


>gi|298249899|ref|ZP_06973703.1| zinc finger CHC2-family protein [Ktedonobacter racemifer DSM 44963]
 gi|297547903|gb|EFH81770.1| zinc finger CHC2-family protein [Ktedonobacter racemifer DSM 44963]
          Length = 416

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 18/91 (19%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF---HDE---KTPSFHCNDSKG 60
            I+         ++IG+YVD + +            CPF   H +      S      KG
Sbjct: 323 TIQQWCAQQDSVSIIGRYVDLNAKG--------LGFCPFGWHHSDGKDTRRSLWVYQPKG 374

Query: 61  F----YYCFSCHVKGDHLSFLSALLGCSFIE 87
                +YC +    G    FL    G    E
Sbjct: 375 SDLCCWYCHAWQRGGSVFDFLRLYHGLEARE 405


>gi|150004070|ref|YP_001298814.1| DNA primase [Bacteroides vulgatus ATCC 8482]
 gi|154491558|ref|ZP_02031184.1| hypothetical protein PARMER_01169 [Parabacteroides merdae ATCC
          43184]
 gi|149932494|gb|ABR39192.1| DNA primase [Bacteroides vulgatus ATCC 8482]
 gi|154088359|gb|EDN87404.1| hypothetical protein PARMER_01169 [Parabacteroides merdae ATCC
          43184]
          Length = 287

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80
          W   PF  EK  SF  +  K  +Y F     GD ++    +
Sbjct: 31 WYKSPFRTEKEASFKVDLHKELWYDFGLGRGGDIITLAKEI 71


>gi|134301130|ref|YP_001114626.1| replicative DNA helicase [Desulfotomaculum reducens MI-1]
 gi|134053830|gb|ABO51801.1| primary replicative DNA helicase [Desulfotomaculum reducens MI-1]
          Length = 440

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 57/174 (32%), Gaps = 18/174 (10%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++  +    E ++L  ++     +    + L    +  +  + ++  +       +    
Sbjct: 4   RVPPQNLEAEQSVLGAMLLERDAIFRVMEFLKPEDFYRDSHRIIYEVILELAEAGRPVDL 63

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L +RG  E +  +      A L      A      + Y + +      + LSR 
Sbjct: 64  ITVSDILRDRGDLEKIGGVTYVATLANLVPTAANA------EYYARIVE----EKALSRA 113

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ-------EAMIEGF 641
              +  +I+    +G  E    L+       +++ Q  S        E +I+ F
Sbjct: 114 LISVTTRISSRGYEG-TESPEELLEDAERSILELGQRRSTDSFTPIKEILIKAF 166


>gi|167771721|ref|ZP_02443774.1| hypothetical protein ANACOL_03093 [Anaerotruncus colihominis DSM
          17241]
 gi|167666361|gb|EDS10491.1| hypothetical protein ANACOL_03093 [Anaerotruncus colihominis DSM
          17241]
          Length = 623

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 15/98 (15%)

Query: 1  MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          M Y +  I  L   + + + +  Q     +        +       HD    S     +K
Sbjct: 1  MQYTQAQID-LANAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97
           F +  S    G  + F+    G SF E+VQ L    G
Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQMLTGENG 84


>gi|86606214|ref|YP_474977.1| replicative DNA helicase [Synechococcus sp. JA-3-3Ab]
 gi|86554756|gb|ABC99714.1| replicative DNA helicase [Synechococcus sp. JA-3-3Ab]
          Length = 591

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 58/177 (32%), Gaps = 12/177 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L  +    E  +L  ++  P  +    + L    +  +  Q+++      + + +    
Sbjct: 12  RLPPQNIEAEEEILGGILLDPEAMARVAELLRPEMFYLSAHQEIYRAALQLYSQGQPTDL 71

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSR 593
             +   L +         L+R    A +     +         Y +  +  Y R RL+  
Sbjct: 72  TTVSAWLADHQL------LERVGGTAAIRRLVEQTVSSVNIDQYARLVVDKYMRRRLI-- 123

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE---SQEAMIEGFGKMSGR 647
           Q      ++A  T++   +        +  +  +  Q     + E ++  F ++  R
Sbjct: 124 QVSNTLARLAYDTSQPLPQLLDRAEQEVFSLTQERVQRSLVPASEVLVNIFSELEER 180


>gi|217977702|ref|YP_002361849.1| hypothetical protein Msil_1537 [Methylocella silvestris BL2]
 gi|217503078|gb|ACK50487.1| conserved hypothetical protein [Methylocella silvestris BL2]
          Length = 103

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 34  AVKGDYWACCPFHDEKT-PSFHCNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIESVQR 91
               ++ A  P   ++   SF  N + G +  FS     GD +S  + L G S +E+ ++
Sbjct: 33  REGHEWVAHNPTRQDRRRGSFKVNLNTGRWSDFSTGDAGGDLVSLAAYLFGLSQVEAARK 92

Query: 92  LAAIAGVPLPV 102
           +A + GV L  
Sbjct: 93  VADMLGVDLFE 103


>gi|91204549|emb|CAJ70777.1| strongly similar to replicative DNA helicase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 447

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 58/178 (32%), Gaps = 12/178 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +   +    E +++  ++    ++      L    +     Q ++  +   + + +    
Sbjct: 9   RTLPQSLDAEMSVIGAMLLDNEVINVVVPILNKQSFYKTAHQSIYQAIIDLYDKGQAIDL 68

Query: 535 EEIHQRLCERGF------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             + + L +R         E L +L+  V   G           +  +     +A   + 
Sbjct: 69  VLLREELKKRSLLENVGGAEYLVELEEAVPTIGNVEYYANIVRENAIKRNLIEVAANIQK 128

Query: 589 RLLSR------QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           +            +  E+ I ++T K     +  L  IL E   +I  +  +E+ + G
Sbjct: 129 QAFEGAVDTGFLLDSSERAIFEITQKKFNASSIKLNEILKETFSRIENLHDRESRLTG 186


>gi|224025014|ref|ZP_03643380.1| hypothetical protein BACCOPRO_01748 [Bacteroides coprophilus DSM
          18228]
 gi|224018250|gb|EEF76248.1| hypothetical protein BACCOPRO_01748 [Bacteroides coprophilus DSM
          18228]
          Length = 298

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 9/82 (10%)

Query: 1  MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
          MN            I + + +             +   YW   P+ +EKT SF  ND   
Sbjct: 1  MNISDA------KQIRLVDFL---CKLGFSPVKRLNYQYWYIAPYREEKTASFKVNDQLN 51

Query: 61 FYYCFSCHVKGDHLSFLSALLG 82
           +Y F     G  +     +  
Sbjct: 52 EWYDFGISEGGSIIELGMKIYN 73


>gi|325672817|ref|ZP_08152511.1| replicative DNA helicase DnaB [Rhodococcus equi ATCC 33707]
 gi|325556070|gb|EGD25738.1| replicative DNA helicase DnaB [Rhodococcus equi ATCC 33707]
          Length = 462

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 15/160 (9%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           G+      + E ++L  ++     + +  + L    +     Q ++  +   +   +   
Sbjct: 24  GRQPPHDMVAEQSVLGGMLLSKDAIADVLEVLRPGDFYRPAHQSVYDAILDLYSRGEPAD 83

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  +   L  RG      +L R      L + T           Y + +A     + + R
Sbjct: 84  PVTVSAELDRRG------ELRRIGGAPYLVTLTQTVPTAANAAYYAEIVA----EKSILR 133

Query: 594 QKEEIEKQIAQVTAKGE-----AEKTAILISILHEVHIQI 628
           +  +   +I Q    G      AE      + + EV  + 
Sbjct: 134 RLVDAGTRIVQYGYAGSDGQDVAEVVDRAQAEIFEVTERR 173


>gi|225873016|ref|YP_002754475.1| replicative DNA helicase [Acidobacterium capsulatum ATCC 51196]
 gi|225791594|gb|ACO31684.1| replicative DNA helicase [Acidobacterium capsulatum ATCC 51196]
          Length = 467

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 16/166 (9%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  ++       E  ++++   +  +  Q++++ +       +      + + L 
Sbjct: 19  AERTILGAVLLDNNAYNEAAEKISADDFAQSAHQRIFARMAELIDSGRPVDIVTLAEELA 78

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-Q 601
            R      K+++     A + S T           Y + +    + + L RQ   I    
Sbjct: 79  RR------KEIETIGGVAYIASLTEGLPRSLAIDEYVRIV----KDKSLLRQIITISSNA 128

Query: 602 IAQVTAKGEAEKTAILISI---LHEVHIQIHQIESQ--EAMIEGFG 642
           I +   + E     +  +    L      I Q  +   E + + FG
Sbjct: 129 ITRAADQSEDALDVLNAAEGALLQVTERSISQGFASIPEIVRDSFG 174


>gi|12958158|gb|AAK09264.1| DnaB [Mycobacterium intracellulare]
          Length = 459

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 49/166 (29%), Gaps = 15/166 (9%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             S   G+   +    E A+L  ++     +    + L    +     Q ++  +   + 
Sbjct: 15  SPSEDFGRQPPQDMAAEQAVLGGMLLSKDAIANVLERLRPGDFYRPAHQNVYDAILDLYG 74

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
             +      +   L       LL+++        L S    A       GY   +     
Sbjct: 75  RGEPADAVTVAAELDR---RNLLRRIGGAPYLHTLISTVPTA----ANAGYYATIVA--- 124

Query: 588 FRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628
            + L R+  E   ++ Q           AE      + ++EV  + 
Sbjct: 125 EKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYEVADRR 170


>gi|224024740|ref|ZP_03643106.1| hypothetical protein BACCOPRO_01468 [Bacteroides coprophilus DSM
          18228]
 gi|224017962|gb|EEF75974.1| hypothetical protein BACCOPRO_01468 [Bacteroides coprophilus DSM
          18228]
          Length = 323

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 8/70 (11%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I+D+   I +++ +    Y    ++  N      W   P  +E   SF  N     +Y 
Sbjct: 2  TIQDVKQ-IKLADYLQSLGYTPVKQQGRNL-----WYKSPLREETDASFKVNTELEKWYD 55

Query: 65 FSCHVKGDHL 74
          F     G+ +
Sbjct: 56 FGIGKGGNII 65


>gi|256751052|ref|ZP_05491935.1| conserved hypothetical protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750162|gb|EEU63183.1| conserved hypothetical protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 628

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 43  CPFHDEKTPSFHCNDSKG---FYYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAAIAGV 98
           C FHD+K PS     ++     Y CF+C+V  + +  +  L    + +++   +  +  +
Sbjct: 277 CIFHDDKNPSAGIFRNENDDWIYNCFACNVSYNIIGVIERLGNFKTRVDTYDFIKKMLNI 336

Query: 99  PLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158
            +   + + ++K  +   L  L     +F  +  +  ++ R      ++ I      ++ 
Sbjct: 337 EITETEFQQKQKAILLETLQALYSE--EFLKYCPQTNKNIRTIREYLQQLILIAMDNIYD 394


>gi|257437552|ref|ZP_05613307.1| toprim domain protein [Faecalibacterium prausnitzii A2-165]
 gi|257199859|gb|EEU98143.1| toprim domain protein [Faecalibacterium prausnitzii A2-165]
          Length = 625

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 15/93 (16%)

Query: 1  MNYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          M Y ++ I        + + + GQ     R                HD    S     +K
Sbjct: 1  MYYTQEQIDRA-NQADLVSFLQGQGEQLIRAGNEYRWKR-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
            +Y  S    G  + F+    G SF E+V+ L
Sbjct: 49 --WYRHSQSKGGAPIDFVMEFFGKSFTEAVEML 79


>gi|256841205|ref|ZP_05546712.1| DNA primase [Parabacteroides sp. D13]
 gi|256737048|gb|EEU50375.1| DNA primase [Parabacteroides sp. D13]
          Length = 323

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 8/70 (11%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I+D+   I +++ +    Y    ++  N      W   P  +E   SF  N     +Y 
Sbjct: 2  TIQDVKQ-IKLADYLQSLGYTPVKQQGRNL-----WYKSPLREETDASFKVNTELEKWYD 55

Query: 65 FSCHVKGDHL 74
          F     G+ +
Sbjct: 56 FGIGKGGNII 65


>gi|195579744|ref|XP_002079721.1| GD24107 [Drosophila simulans]
 gi|194191730|gb|EDX05306.1| GD24107 [Drosophila simulans]
          Length = 1106

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 89/242 (36%), Gaps = 20/242 (8%)

Query: 405 EIHLKNCINHIKDQKLR-YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
              ++     IKD  ++     + + ++LQ    +  ++ + + +  +   + ++ +G  
Sbjct: 719 LQQVQEANGDIKDSLVKVEELVKVLEEKLQAATSQLESQQATHKKLQELLVKSQENEG-- 776

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLW 519
             L   SL   +   +       L   L      L+E   +L +    +        ++ 
Sbjct: 777 -NLQGESLAVTEKLHQLEQANGELKEALCQKENGLKELEGKLEESNTLLESQKKSHNEIQ 835

Query: 520 SFLFSDFVEQKYFLPE--EIHQRLCE--RGFGELLKQLDR--QVRDAGLWSATTEANIVD 573
             L     +++    E  ++ ++L +  +   EL K L +   + + G    T  A    
Sbjct: 836 DKLEQAQQKERNLQEETSKLAEQLSQLKQANEELQKSLQQKQLLLEKGNEFDTQLAEYQK 895

Query: 574 VRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           V      A ++       L ++  E+E  + Q     +A+KTA L     E+  Q+  +E
Sbjct: 896 VIDEMDDAASVKSTLLEQLQKRVAELEAALRQAN---DAQKTAYL--EAQELRRQLESLE 950

Query: 633 SQ 634
            +
Sbjct: 951 LE 952


>gi|89897775|ref|YP_521262.1| hypothetical protein DSY5029 [Desulfitobacterium hafniense Y51]
 gi|219670924|ref|YP_002461359.1| replicative DNA helicase [Desulfitobacterium hafniense DCB-2]
 gi|89337223|dbj|BAE86818.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219541184|gb|ACL22923.1| replicative DNA helicase [Desulfitobacterium hafniense DCB-2]
          Length = 444

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 60/168 (35%), Gaps = 15/168 (8%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K+       E ++L  L+  P +    ++ +    +  +  ++++  L   F +     
Sbjct: 4   TKVPPHNLEAEQSVLGALMLDPEVGSSVFEVVQPEDFYRDNHRQIFLALRDLFEKGDPID 63

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L + G  E +  +    + A    +          + Y + +A     + L R
Sbjct: 64  LVSVAESLRQSGRLEQIGGIATISQIARSVPSAVNC------EYYARIVA----EKSLLR 113

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           Q      QIA+   +   E    L+    ++ + + Q +    + +GF
Sbjct: 114 QLIRSSGQIAEKGYEP-GEAATSLLEEAEKMIMDLSQRQ----VKDGF 156


>gi|229496269|ref|ZP_04389989.1| putative mobilizable transposon, excision protein [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316847|gb|EEN82760.1| putative mobilizable transposon, excision protein [Porphyromonas
           endodontalis ATCC 35406]
          Length = 314

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 22/130 (16%)

Query: 21  IGQYVD---WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL 77
           I  Y+        K       Y A  P+ ++   S   +  +  ++ +     G  +  +
Sbjct: 16  IADYLHACGIKPAKRYNGYALYHA--PYREDPNASLKVDFRQNLWHDYGTSQGGSIIDLV 73

Query: 78  SALLGCSFIESVQRLAA-------------IAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
             + GCS   ++  LA               A +       + E++      ++ + E  
Sbjct: 74  MKMRGCSAYGAIAHLAEGKATTLAPSSFHREAHI----GQRRDEQRPNNTRRILSINEAL 129

Query: 125 TDFFHHSLKN 134
                  L+ 
Sbjct: 130 PLHLQSYLRE 139


>gi|220905500|ref|YP_002480812.1| hypothetical protein Ddes_2238 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869799|gb|ACL50134.1| hypothetical protein Ddes_2238 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 198

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCF--SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL 100
           CPF +    SF          C    C+  GD + F +     S  E+ + LA    +  
Sbjct: 27  CPFCN--KLSFKIYPD-QLAKCHNNVCNWYGDVIQFYTDFKKISRSEAFKELAGRLDLKK 83

Query: 101 PVVDPKIEKKEKIQTDLIRLIEV 123
            +V+ K +  ++ +  L   +E 
Sbjct: 84  SIVEIKEQTFDEARMALAEDLEF 106


>gi|325115434|emb|CBZ50989.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 2242

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 86/282 (30%), Gaps = 16/282 (5%)

Query: 369  TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN-HIKDQ------KLR 421
             +   L  +  P  D    RE E+ S     + A +           I+D         R
Sbjct: 1300 DSSLGLPEQEGPNGDRKRAREGEDTSEAGVSKDAAILPEGCEEERGKIEDPRCSEAFVQR 1359

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                +      + + +K   E  G   +W +  +  +  G  + L + +       ++  
Sbjct: 1360 ALAMRDFSYLAEAVLEKRAREKDGGDEHWSRARKTVEPAGTLEALAEKAREDQTALERLE 1419

Query: 482  ---LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD----FVEQKYFLP 534
               L     + +L    A   E+   L        E +               +      
Sbjct: 1420 AECLSARTAIASLKADLARTTEEKDALRKESEKKEEERVRKEQALEQRKRELEDAFEKER 1479

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
              + +RL  RG      +  ++             +  +  +  Q A  L   +  L+R+
Sbjct: 1480 AALEERLR-RGVEAERAKRRQETEGKAQEKREAHDDSAEKEKLRQHAQTLAAAYGALARK 1538

Query: 595  KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              E+E+ +     K + E+   L+  L +   ++ Q E + A
Sbjct: 1539 V-ELEEALRGQAMKKKEEEMRNLLDHLKQQEARLRQREEENA 1579



 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 14/127 (11%)

Query: 527  VEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                    E++ Q        +G L ++++ +    G      E  + ++    +Q  A 
Sbjct: 1511 AHDDSAEKEKLRQHAQTLAAAYGALARKVELEEALRGQAMKKKEEEMRNLLDHLKQQEAR 1570

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKGEAE------------KTAILISILHEVHIQIHQIE 632
             ++    + Q     + +     K E E            +T  L   L +   ++ + +
Sbjct: 1571 LRQREEENAQLHAQLQALRTHAQKSEDERQRNLDTPPQARETEALRRQLQDATQELTRQQ 1630

Query: 633  SQEAMIE 639
             +  ++E
Sbjct: 1631 QKIRLLE 1637


>gi|149923442|ref|ZP_01911846.1| replicative DNA helicase [Plesiocystis pacifica SIR-1]
 gi|149815694|gb|EDM75221.1| replicative DNA helicase [Plesiocystis pacifica SIR-1]
          Length = 514

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 64/211 (30%), Gaps = 12/211 (5%)

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQE 500
                     + A  R            ++   +        E A++   L+     L E
Sbjct: 4   RVEDPSTSTPRRAPERADLATGLPAPPPAMNAPRTLPHRPEAENAVIGGILLRGRDALGE 63

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
             + + +  +     Q ++  +       +      +  +L   G  EL+  ++   R  
Sbjct: 64  VLELITEDDFYQPRTQAVFRAMRILEERGEPIDVITLEAQLGRTGELELVGGIEGLARFD 123

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEI----------EKQIAQVTAKG 609
              +A       ++ +       L    R ++ +  EE+          E++I +V  +G
Sbjct: 124 RYATAHNIKAHAELVRESAMVRNLVVATREIAEEGMEELEDVKAYVDTAEQRILKVNERG 183

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIEG 640
                     ++ EV   I + + Q   I G
Sbjct: 184 RKSSYRSSRELMLEVFQNITERQRQTDPITG 214


>gi|255531955|ref|YP_003092327.1| replicative DNA helicase [Pedobacter heparinus DSM 2366]
 gi|255344939|gb|ACU04265.1| replicative DNA helicase [Pedobacter heparinus DSM 2366]
          Length = 522

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 60/198 (30%), Gaps = 21/198 (10%)

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
             +     +      RL  +    G++  +    E A+L  L+     L      L    
Sbjct: 5   QPQGQDKANFSARKTRLSNTMSTMGRIPPQAIDLEEAILGALMLEKDALSTVIDILKPEM 64

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-------------------L 550
           + +   +K++  +   F + K      +   L   G  E+                   +
Sbjct: 65  FYHEAHKKIFEAIQGLFQKSKPVDILTVTAELRTLGLLEMIGGAYYITNLTNRVASAANI 124

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI-EKQIAQVTAKG 609
           +   R V    +       +   ++  Y+    ++       +   +I +  + + T K 
Sbjct: 125 EFHARIVSQKYIQRELIRISSEIIQNAYEDTTDIFDLLDHAEKNLFDIAQNNLRRDTQKM 184

Query: 610 EAEKTAILISILHEVHIQ 627
           + E     ++ L E+  +
Sbjct: 185 D-EIVKQSLATLEELRSK 201


>gi|156938172|ref|YP_001435968.1| SMC domain-containing protein [Ignicoccus hospitalis KIN4/I]
 gi|156567156|gb|ABU82561.1| SMC domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 878

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 76/235 (32%), Gaps = 13/235 (5%)

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
                        + R    +   + + +  +K     +   R   +      +    +R
Sbjct: 433 RDSCPVCGSPLPPERRESLIRRYAEEVAKFEEKLTELKAREKRLETEARLLESRLEKLKR 492

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
            +  +  + +      L   AL L L +      E  ++L+  R       KL   +  +
Sbjct: 493 ALDKARARLESLGFEDL--DALGLYLADLKKRFNELKEQLSRTRASVEHYDKLVKEVKEE 550

Query: 526 FVEQKYFLPEEIHQRLCERGFGE-LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                      +  +L E    E +L+Q++ Q+ +     A+ E  +       ++ L +
Sbjct: 551 L--------SAVTAQLEELKRKEGMLRQIEHQLEELRGVDASKEEEVEKRLSEIKKELEV 602

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                 L R+  E+E+  ++      A +         E+  ++  +   EA +E
Sbjct: 603 LGSPEELERRIAELERLASKKKELSAAAELKR--REEAELKRELASLGFDEASLE 655



 Score = 43.7 bits (101), Expect = 0.087,   Method: Composition-based stats.
 Identities = 29/263 (11%), Positives = 92/263 (34%), Gaps = 14/263 (5%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           E+     + + + T +   N      + +  L + +N IK+ + +    +     ++   
Sbjct: 169 EASLREIINYYKGTASNLVNVQRTYEKYKKELNSEMNRIKELQEKLPLLKEELRMVEDKL 228

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
               +E +       K  + + Q    Q  +++ + + +        E  LL + +    
Sbjct: 229 NDLRSELNELKEKKAKYQKVKAQLMKVQEELRTLIGELEALSDLDEAELNLLRSKLVKVK 288

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            L    + L +        ++L +   +   E +     E  +    +   E+L++    
Sbjct: 289 DLSLIKERLENELKAIKSKKELLAKREAVKSELRKLKDLERRRDELSKKLDEMLERRQLL 348

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           V   G      E    ++++  +  + L +    L+    ++E+++ ++           
Sbjct: 349 VMKLGTLEKEVEEIEKEIKRIEKNYVVLERELDGLT--ISDLEQRVTELE---------- 396

Query: 617 LISILHEVHIQIHQIESQEAMIE 639
              +   V  ++ ++ ++  ++E
Sbjct: 397 --KMYENVKKELEEVTNERRLVE 417


>gi|315925588|ref|ZP_07921798.1| replicative DNA helicase DnaB [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621129|gb|EFV01100.1| replicative DNA helicase DnaB [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 452

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 63/196 (32%), Gaps = 28/196 (14%)

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
               +     +  EA++L  LI +   L    + L    + +   Q+++  + +     +
Sbjct: 2   PTNPRQLPHSAEAEASVLGGLIMNAEKLMVAEEHLRAEDFYDPRNQQIYQNILAMREAGQ 61

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 + QRL +    +L++++      A L       +  +      Q  AL +R   
Sbjct: 62  PLDLVTLTQRLTDV---DLIEKIGGPAYLAALVQQVPMLSNFENYCVIVQDQALLRRLVQ 118

Query: 591 LSRQK---------------EEIEKQI---AQVTAKGEA----EKTAILISILHEVHIQI 628
            S                  E  E++I    +   KG+     +     I  + EV    
Sbjct: 119 ASSDILDDCYGEYESVADVVEAAERKIFQVGEGQIKGDFAAIGDVVGETIQHIEEVRTHR 178

Query: 629 HQIESQEAMIEGFGKM 644
            +      +  GF ++
Sbjct: 179 GE---TTGLATGFKEL 191


>gi|229491315|ref|ZP_04385140.1| ATP-dependent chaperone protein ClpB [Rhodococcus erythropolis
           SK121]
 gi|229321772|gb|EEN87568.1| ATP-dependent chaperone protein ClpB [Rhodococcus erythropolis
           SK121]
          Length = 877

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 16/218 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++K+I   +   R ++           +  +++    + ++     +++ AL+  + ++H
Sbjct: 326 YRKHIESDAALERRFQTVLVDEPSAEDAISILRGLRERLEVFHGVKIQDGALVAAVTLSH 385

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +    +L + + S   E      +     + E    +      
Sbjct: 386 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDELTRKVTRLEIEEAALSKETD--- 441

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                A L     E   +      + A   ++  R   R+ +E+  ++ ++  + E  + 
Sbjct: 442 -AASKARLEELRKELADLRAEADARHAQ--WEAERQAIRRVQELRGELERLRHEAEEAER 498

Query: 615 AILIS--------ILHEVHIQIHQIESQEAMIEGFGKM 644
              ++         +  +  ++   E Q A  +G   +
Sbjct: 499 NYDLNRAAELRYGEITALERRLEAAEEQLATRQGRNPL 536


>gi|159028917|emb|CAO90722.1| dnaB [Microcystis aeruginosa PCC 7806]
          Length = 585

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 12/173 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             L  +    E ++L  ++  P  L      L    +     Q ++    +   + K   
Sbjct: 5   QSLPPQNIEAEESILGGILLDPKALGRISDFLIPEAFYVKTHQDIYRAALALQGKGKPTD 64

Query: 534 PEEIHQRLCER-------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ---ALA 583
              +   L +        G   LL+ ++R V  A +           +R+        + 
Sbjct: 65  LMTVSSWLQDNHLLEEIGGMPRLLQLIERTVSAANIDRYAELVMDKYMRRQLISTGGEII 124

Query: 584 LYKRFRLLSRQK--EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              R   L  +   +E E++I ++T K   E    L   L E   +I +++  
Sbjct: 125 ELARDTTLELENVFDESEQKIFRLTQKRPQEGLIFLGDTLIETFNEIEKMQET 177


>gi|111023664|ref|YP_706636.1| ATP-binding subunit of heat shock protein ClpB [Rhodococcus jostii
           RHA1]
 gi|110823194|gb|ABG98478.1| ATP-binding subunit of heat shock protein ClpB [Rhodococcus jostii
           RHA1]
          Length = 789

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 16/218 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++K+I   +   R ++           +  +++    + ++     +++ AL+  + ++H
Sbjct: 326 YRKHIESDAALERRFQTVLVDEPSAEDAISILRGLRERLEVFHGVKIQDGALVAAVTLSH 385

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +    +L + + S   E      +     + E    +      
Sbjct: 386 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDELTRKVTRLEIEEAALSKETD--- 441

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                A L     E   +      + A   ++  R   R+ +E+  ++ ++  + E  + 
Sbjct: 442 -AASKARLEELRKELADLRAEADARHAQ--WEAERQAIRRVQELRGELERLRHEAEEAER 498

Query: 615 AILIS--------ILHEVHIQIHQIESQEAMIEGFGKM 644
              ++         +  +  ++   E Q A  +G   +
Sbjct: 499 NYDLNRAAELRYGEITALERRLEAAEEQLATRQGRNPL 536


>gi|14346042|gb|AAK59986.1| CCAAT displacement protein CDP [Mus musculus]
          Length = 1517

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 100/286 (34%), Gaps = 22/286 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + E + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 90  DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 149

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q   ++        ++  ++   +   +          KL +     +   L T +   
Sbjct: 150 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQT--LQTALEKT 207

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +     +E++ + + L   +   E      E + ++L        L 
Sbjct: 208 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 267

Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598
              ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++
Sbjct: 268 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 327

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           E+Q+    +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 328 EQQLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 373


>gi|321468531|gb|EFX79515.1| hypothetical protein DAPPUDRAFT_304474 [Daphnia pulex]
          Length = 541

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 51/139 (36%), Gaps = 8/139 (5%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +  +     +++      + +         +     +     LL++L   V        
Sbjct: 338 ENFLFTGPLQRRIQQIASRNGLGDPSPEVVSLISHATQERLKTLLEKLA--VTAEHRMEV 395

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQK-EEIEKQI----AQVTAKGEAEKTAILISI 620
                  +V+Q  +  L   +    L R++  EI++++    A+  +K E  + A L + 
Sbjct: 396 VKTDARYEVQQDVKGQLKFLEELDKLERRRHSEIQREMLLKAAKSRSKAEDPEQAKLKAK 455

Query: 621 LHEVHI-QIHQIESQEAMI 638
             E+   ++ ++  +EA +
Sbjct: 456 AKEMQRAEMEELRQREANM 474


>gi|154149142|ref|YP_001406556.1| replicative DNA helicase [Campylobacter hominis ATCC BAA-381]
 gi|153805151|gb|ABS52158.1| replicative DNA helicase [Campylobacter hominis ATCC BAA-381]
          Length = 485

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/98 (11%), Positives = 33/98 (33%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E ++L ++  +     E +  + D  +       ++  + S +   +      + +RL  
Sbjct: 16  ERSILSSIFFNEDAFSEVFGIIDDKDFYLKAHADIFKAMMSCYSHDEPIDIGFVKKRLEN 75

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
               E+L ++        +     E     +R+   + 
Sbjct: 76  NYNEEILSEILSLSALVDVEKYARELKDKSIRRNLLKI 113


>gi|307127267|ref|YP_003879298.1| hypothetical protein SP670_1135 [Streptococcus pneumoniae 670-6B]
 gi|306484329|gb|ADM91198.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B]
 gi|327474316|gb|EGF19723.1| zinc finger protein [Streptococcus sanguinis SK408]
          Length = 361

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 28/117 (23%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
           I++    I I ++            N +   +          P HD    SF    +   
Sbjct: 3   IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
           +  FS  ++GD + F+  + G SF E++  L+            +  ++++ +    
Sbjct: 47  FKWFSRDIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAIQEKRERPFYY 97


>gi|119510465|ref|ZP_01629598.1| DnaB helicase [Nodularia spumigena CCY9414]
 gi|119464887|gb|EAW45791.1| DnaB helicase [Nodularia spumigena CCY9414]
          Length = 451

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 10/139 (7%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L  +    E A+L  ++  P  +      L  I +  +  + ++        + K    
Sbjct: 14  RLPPQNIEAEEAILGGILLDPEAIGRVSDRLLPIAFYISAHKDIYQAALRLHAQGKPTDL 73

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L +    ++L ++  + + A L   T  A  +D   G           + L RQ
Sbjct: 74  LSVTSWLADN---DILARIGGRNKLATLVDRTVSAVNIDALAGLVME-------KYLRRQ 123

Query: 595 KEEIEKQIAQVTAKGEAEK 613
             +   +I  +  + E E 
Sbjct: 124 LIKAGNEIVHLGYETEQEL 142


>gi|16552142|dbj|BAB71249.1| unnamed protein product [Homo sapiens]
          Length = 883

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 99/265 (37%), Gaps = 21/265 (7%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
            +R+ +    N  + + E E    N          +   +  ++ RL++   +       
Sbjct: 626 LQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEE 685

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA-ALLLTLINHP----AILQE 500
             +   +  +H+ +    Q  +     +   +K+   RE  AL+  L+        +L  
Sbjct: 686 LFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIA 745

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           + ++   +R    EL  L   L  +         +++ ++  +     L + ++   ++ 
Sbjct: 746 KEEQEDLLRKRERELTALKGALKEEVSSH-DQEMDKLKEQY-DAELQALRESVEEATKNV 803

Query: 561 GLWSATTEANIVD-------VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            + ++ +  +  D       V+   ++   L  R   L R+  ++++QI  +  KG+  K
Sbjct: 804 EVLASRSNTSEQDQAGTEMRVKLLQEENENLQGRSEELERRVAQLQRQIEDL--KGDEAK 861

Query: 614 TAILISILHEVHIQIHQIESQEAMI 638
                  L +   +I Q+E  EA++
Sbjct: 862 AKET---LKKFEGEIRQLE--EALV 881



 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 86/249 (34%), Gaps = 12/249 (4%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           +++++L I +      ++ +       +  R+R++   ++  ++H+          +  +
Sbjct: 614 EQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLE 673

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +     R     L + K+ ++    E   L        + +   +  +  R ++ E   L
Sbjct: 674 ESEGELRKNLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSAKRSEDREKGAL 728

Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
              L     + +  L  +  Q    R  ER    L   L  +V          +      
Sbjct: 729 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 788

Query: 575 RQGYQQALALYKRFRLLSRQKE---EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            Q  ++++    +   +   +    E ++   ++  K   E+   L     E+  ++ Q+
Sbjct: 789 LQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENENLQGRSEELERRVAQL 848

Query: 632 ESQEAMIEG 640
           + Q   ++G
Sbjct: 849 QRQIEDLKG 857


>gi|256086969|ref|XP_002579654.1| myosin heavy chain [Schistosoma mansoni]
 gi|238665122|emb|CAZ35893.1| myosin heavy chain [Schistosoma mansoni]
          Length = 1493

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 29/258 (11%)

Query: 400  ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
            +R ++E  +K     + D++ +      ++ ++    ++   +        +K  + +  
Sbjct: 790  QRGDMEQRIKELEERLADEEDQAANLTEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 849

Query: 460  KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
            K    R +QS + +         ++   L          +   + L       N L KL 
Sbjct: 850  KDNQIRTLQSEMAQQDEMIGKLNKDKKNLE------EQNKRTQEALQAEEDKVNHLNKLK 903

Query: 520  SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568
            + L S   E +             E+  ++L    +   E +  L+R  RD        E
Sbjct: 904  AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQLRRKE 963

Query: 569  ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT---------AILIS 619
            A I  +   ++    L  +   L R+ +E++ +I ++    EAE+            L S
Sbjct: 964  AEIGGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 1020

Query: 620  ILHEVHIQIHQIESQEAM 637
             L EV  ++ + +   A 
Sbjct: 1021 ELEEVVDRLEEQDGATAA 1038



 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 79/264 (29%), Gaps = 32/264 (12%)

Query: 402  AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
                  L+  I  +++       +++  ++ +Q  +  + E           A       
Sbjct: 984  QRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLESELEEVVDRLEEQD-GATAAQSDL 1042

Query: 462  PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
              +R  +   +K  L       E A+          + E   +L        + +K  S 
Sbjct: 1043 TKKREAELMKLKRDLEDTRLQNEQAIATMRKKQSDAINELADQLDQANKAKAKAEKERSQ 1102

Query: 522  LFSDFVEQKYFLPEEIHQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVD 573
              ++  +    +   +  +L              E+  +LD   R+    ++T   +  +
Sbjct: 1103 FKAELDDAHNQVDSIMKAKLNSEKTVKALESQLQEVSVKLDEATRNLNEQASTKARSSQE 1162

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--------------------- 612
            V +  +Q      +   L++ K+++  Q+ +     E E                     
Sbjct: 1163 VSELQRQLEEAESQLSQLNKIKQQLSAQLEEARHSLEDESRMKAKLNGEVRNLTSDLDSL 1222

Query: 613  --KTAILISILHEVHIQIHQIESQ 634
                    S   ++  Q+ +++ +
Sbjct: 1223 RETLEEEQSAKGDLQRQLQKLQGE 1246


>gi|114773239|ref|ZP_01450474.1| replicative DNA helicase [alpha proteobacterium HTCC2255]
 gi|114546358|gb|EAU49267.1| replicative DNA helicase [alpha proteobacterium HTCC2255]
          Length = 470

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 47/132 (35%), Gaps = 8/132 (6%)

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
           +      Q+     + + K+       E +++ +++  P    +  + + +  + N   Q
Sbjct: 6   QADNEKKQKYNDEKVDRLKIPPHSIEAEQSVIGSMLISPDSWDKVAEIVIESDFYNRSHQ 65

Query: 517 KLWSFLFSDFVEQKYFLPE------EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            ++  +       +           E+H +L E G    L +L +    A   +  + A 
Sbjct: 66  VIYQSILKLLANNQPVDVITTSEHLELHDKLDEAGGFAYLAELAKNTPSAA--NVVSYAK 123

Query: 571 IVDVRQGYQQAL 582
           I+  R   ++ +
Sbjct: 124 IIKERAIIRELI 135


>gi|885934|gb|AAB09631.1| ClpB [Synechococcus elongatus PCC 7942]
          Length = 883

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 71/204 (34%), Gaps = 4/204 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI + +   R +++    +     +  +++    + ++     + + AL+   +   
Sbjct: 330 YRQYIEKDAALERRFQQVFVDQPTVEDTISILRGLKERYEVHHGVRISDNALVAAAVLST 389

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S   E      + +   +      +    L  
Sbjct: 390 RYISDRFLPDKAIDLVDESAARLKMEITSKPEELDEIDRKILQLEMERLSLQKE-SDLAS 448

Query: 556 QVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           Q R   L     +       +   +Q    +    + +  + +++   I Q     +  K
Sbjct: 449 QERLQRLEKELADLKEEQRSLSSQWQAEKDVITDIQSVKEEIDQVNLLIQQAERDYDLNK 508

Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636
            A L    L E+  +++++E   A
Sbjct: 509 AAELKYGKLTELQRKLNEMEGGLA 532


>gi|257463122|ref|ZP_05627523.1| replicative DNA helicase [Fusobacterium sp. D12]
 gi|317060718|ref|ZP_07925203.1| replicative DNA helicase [Fusobacterium sp. D12]
 gi|313686394|gb|EFS23229.1| replicative DNA helicase [Fusobacterium sp. D12]
          Length = 446

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 57/170 (33%), Gaps = 11/170 (6%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            SL +          E A+L  +   P + +E  + ++   +  N    ++  +   + E
Sbjct: 2   KSLEEISKVPHSLEAEQAILGGIFVEPDLFEEVLEIVSPEDFYKNIYSLIFRSMLEVYRE 61

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                   I  +L +            Q  +  +    +            +  A   + 
Sbjct: 62  SNEIDMVLIKNKLLQ----------MHQFTEEQIHEELSNILENSFSAVNLKEYARLVKE 111

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           + + R+  E  ++I ++  + + +    ++     + +++ Q +  + +I
Sbjct: 112 KAILRRLGEAGRKITEIAYRDDRD-AEDILDEAESIVLKVDQQKKGKEII 160


>gi|126739844|ref|ZP_01755535.1| hypothetical protein RSK20926_14189 [Roseobacter sp. SK209-2-6]
 gi|126719076|gb|EBA15787.1| hypothetical protein RSK20926_14189 [Roseobacter sp. SK209-2-6]
          Length = 791

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 95/264 (35%), Gaps = 13/264 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
                        + +LE  L          + R   ++ +   L Q+     +  +   
Sbjct: 277 TLLAAAEQARIQLQTQLEDALSTLEAAKAQSQERDELAERLTRILSQMQVTQSSAQARVT 336

Query: 448 RYWKKNARHRDQKGPSQRLMQSSL--VKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
               +  R RD+   ++  + ++L   + + ++  +  +A L      +     +  +EL
Sbjct: 337 ALEAEMTRLRDEHTATRERLAANLEAARQQATQSQAALQAELARQRAANVETRSQYQEEL 396

Query: 506 ADIRYDNNEL-QKLWSFLFSDFVEQKYFLPEEIHQRLC---------ERGFGELLKQLDR 555
           A ++  + E  Q L   L +   E +    E + QRL          + G    L+Q + 
Sbjct: 397 ARLQNTHAEAEQALKQQLQAAKAEAETVRRE-LEQRLAAATADAVDIQAGLETRLQQAEA 455

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            +  A   ++++E +   V     QAL   ++ +  +  +  +++++    A  +  K  
Sbjct: 456 DLAAARTVASSSEEDRASVEMRLLQALEQLEQAQAAADDQAVLQQRLLAALADRDQAKDR 515

Query: 616 ILISILHEVHIQIHQIESQEAMIE 639
                      +   +++++A+ E
Sbjct: 516 AQEQQSLAQKREALLLQARQALSE 539


>gi|209693984|ref|YP_002261912.1| replicative DNA helicase [Aliivibrio salmonicida LFI1238]
 gi|208007935|emb|CAQ78067.1| replicative DNA helicase [Aliivibrio salmonicida LFI1238]
          Length = 465

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/139 (10%), Positives = 43/139 (30%), Gaps = 3/139 (2%)

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                R   + +   K+       E ++L  L+          +++  + + +   + ++
Sbjct: 4   NRNQNRKYDAQVDALKVPPHSLEAEQSVLGGLLLDNERWDTVAEKVVAVDFYSRPHRLIF 63

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             + S   +        + + L      E L  +      A L   T  A  ++      
Sbjct: 64  ESVKSILEDSMPLDLITLSEHLERH---EKLDSVGGFAYLADLVKNTPSAANINAYADIV 120

Query: 580 QALALYKRFRLLSRQKEEI 598
           +  A+ +    ++ +  + 
Sbjct: 121 RERAMVRNLISVANEIADA 139


>gi|182684270|ref|YP_001836017.1| hypothetical protein SPCG_1300 [Streptococcus pneumoniae CGSP14]
 gi|182629604|gb|ACB90552.1| hypothetical protein SPCG_1300 [Streptococcus pneumoniae CGSP14]
          Length = 361

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 28/117 (23%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
           I++    I I ++            N +   +          P HD    SF    +   
Sbjct: 3   IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
           +  FS  ++GD + F+  + G SF E++  L+            +  ++++ +    
Sbjct: 47  FKWFSRDIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAVQEKRERPFYY 97


>gi|255320907|ref|ZP_05362081.1| DNA primase TraC [Acinetobacter radioresistens SK82]
 gi|255302076|gb|EET81319.1| DNA primase TraC [Acinetobacter radioresistens SK82]
          Length = 318

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/349 (14%), Positives = 92/349 (26%), Gaps = 60/349 (17%)

Query: 1   MNYPRDFIKDLLIHIPIS--NLIGQY----VDWDRRKTNAVKGDYWACCPFHDEKTPSFH 54
           M+ PR  + D+         ++I       V + +             CP     T  F 
Sbjct: 1   MSKPRFQLDDVKQKASGLWQDVIFPRFNIDVRFKK----------KTPCPACGG-TDRFR 49

Query: 55  CNDSKGF--YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
            +D KG   Y C  C   GD  + +S + G SF E +  +A+I G  L       ++   
Sbjct: 50  YDDKKGSGDYICQHCGP-GDGFNLISKVTGLSFPEVLSEVASIVG--LDATSNITDEDRA 106

Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172
                    E                                E  ++      + + +  
Sbjct: 107 RWKKEQEWREK-------------------------------ERLEMELKRQDQIARKAE 135

Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
              +G    +          D            ++ P   + G++     +T+       
Sbjct: 136 GIWRGAYLGEESPYLKAKQVDKDPKVKITHDGNVLIPAYDASGKMWNL--QTIESDGHKY 193

Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
           ++   E      G   Y                     +  I + EGY   +S+  A   
Sbjct: 194 FITGTENA---DGSVEYGGGRTGGCFFIIGEIQPDLYDNHIICIAEGYATGMSIHMATGH 250

Query: 293 NVVSSLGTALTEYQLRLLWKLSPR--IVLCFDGDDPGLRAAYKAIDLVL 339
            V  +            L +  P+  +V C D D        K  +   
Sbjct: 251 PVALAFVANNIPKVGIALKQKYPKSTLVYCADDDSAKQDTGLKCANQAH 299


>gi|50843678|ref|YP_056905.1| replicative DNA helicase [Propionibacterium acnes KPA171202]
 gi|289425889|ref|ZP_06427641.1| replicative DNA helicase [Propionibacterium acnes SK187]
 gi|289428161|ref|ZP_06429860.1| replicative DNA helicase [Propionibacterium acnes J165]
 gi|295131768|ref|YP_003582431.1| replicative DNA helicase [Propionibacterium acnes SK137]
 gi|50841280|gb|AAT83947.1| replicative DNA helicase [Propionibacterium acnes KPA171202]
 gi|289153665|gb|EFD02374.1| replicative DNA helicase [Propionibacterium acnes SK187]
 gi|289158641|gb|EFD06845.1| replicative DNA helicase [Propionibacterium acnes J165]
 gi|291375265|gb|ADD99119.1| replicative DNA helicase [Propionibacterium acnes SK137]
 gi|313765146|gb|EFS36510.1| replicative DNA helicase [Propionibacterium acnes HL013PA1]
 gi|313771585|gb|EFS37551.1| replicative DNA helicase [Propionibacterium acnes HL074PA1]
 gi|313794125|gb|EFS42145.1| replicative DNA helicase [Propionibacterium acnes HL110PA1]
 gi|313803246|gb|EFS44442.1| replicative DNA helicase [Propionibacterium acnes HL110PA2]
 gi|313811983|gb|EFS49697.1| replicative DNA helicase [Propionibacterium acnes HL083PA1]
 gi|313813934|gb|EFS51648.1| replicative DNA helicase [Propionibacterium acnes HL025PA1]
 gi|313817129|gb|EFS54843.1| replicative DNA helicase [Propionibacterium acnes HL059PA1]
 gi|313819075|gb|EFS56789.1| replicative DNA helicase [Propionibacterium acnes HL046PA2]
 gi|313821647|gb|EFS59361.1| replicative DNA helicase [Propionibacterium acnes HL036PA1]
 gi|313823783|gb|EFS61497.1| replicative DNA helicase [Propionibacterium acnes HL036PA2]
 gi|313826887|gb|EFS64601.1| replicative DNA helicase [Propionibacterium acnes HL063PA1]
 gi|313829257|gb|EFS66971.1| replicative DNA helicase [Propionibacterium acnes HL063PA2]
 gi|313832417|gb|EFS70131.1| replicative DNA helicase [Propionibacterium acnes HL007PA1]
 gi|313834152|gb|EFS71866.1| replicative DNA helicase [Propionibacterium acnes HL056PA1]
 gi|313839220|gb|EFS76934.1| replicative DNA helicase [Propionibacterium acnes HL086PA1]
 gi|314916848|gb|EFS80679.1| replicative DNA helicase [Propionibacterium acnes HL005PA4]
 gi|314919026|gb|EFS82857.1| replicative DNA helicase [Propionibacterium acnes HL050PA1]
 gi|314921144|gb|EFS84975.1| replicative DNA helicase [Propionibacterium acnes HL050PA3]
 gi|314926123|gb|EFS89954.1| replicative DNA helicase [Propionibacterium acnes HL036PA3]
 gi|314932510|gb|EFS96341.1| replicative DNA helicase [Propionibacterium acnes HL067PA1]
 gi|314956261|gb|EFT00633.1| replicative DNA helicase [Propionibacterium acnes HL027PA1]
 gi|314958759|gb|EFT02861.1| replicative DNA helicase [Propionibacterium acnes HL002PA1]
 gi|314960963|gb|EFT05064.1| replicative DNA helicase [Propionibacterium acnes HL002PA2]
 gi|314964021|gb|EFT08121.1| replicative DNA helicase [Propionibacterium acnes HL082PA1]
 gi|314968785|gb|EFT12883.1| replicative DNA helicase [Propionibacterium acnes HL037PA1]
 gi|314975082|gb|EFT19177.1| replicative DNA helicase [Propionibacterium acnes HL053PA1]
 gi|314977493|gb|EFT21588.1| replicative DNA helicase [Propionibacterium acnes HL045PA1]
 gi|314979081|gb|EFT23175.1| replicative DNA helicase [Propionibacterium acnes HL072PA2]
 gi|314985871|gb|EFT29963.1| replicative DNA helicase [Propionibacterium acnes HL005PA1]
 gi|314985938|gb|EFT30030.1| replicative DNA helicase [Propionibacterium acnes HL005PA2]
 gi|314989247|gb|EFT33338.1| replicative DNA helicase [Propionibacterium acnes HL005PA3]
 gi|315078268|gb|EFT50307.1| replicative DNA helicase [Propionibacterium acnes HL053PA2]
 gi|315081425|gb|EFT53401.1| replicative DNA helicase [Propionibacterium acnes HL078PA1]
 gi|315084932|gb|EFT56908.1| replicative DNA helicase [Propionibacterium acnes HL027PA2]
 gi|315087463|gb|EFT59439.1| replicative DNA helicase [Propionibacterium acnes HL002PA3]
 gi|315089627|gb|EFT61603.1| replicative DNA helicase [Propionibacterium acnes HL072PA1]
 gi|315096877|gb|EFT68853.1| replicative DNA helicase [Propionibacterium acnes HL038PA1]
 gi|315100063|gb|EFT72039.1| replicative DNA helicase [Propionibacterium acnes HL059PA2]
 gi|315102776|gb|EFT74752.1| replicative DNA helicase [Propionibacterium acnes HL046PA1]
 gi|315107329|gb|EFT79305.1| replicative DNA helicase [Propionibacterium acnes HL030PA1]
 gi|315110521|gb|EFT82497.1| replicative DNA helicase [Propionibacterium acnes HL030PA2]
 gi|327333011|gb|EGE74743.1| replicative DNA helicase [Propionibacterium acnes HL096PA2]
 gi|327334004|gb|EGE75719.1| replicative DNA helicase [Propionibacterium acnes HL096PA3]
 gi|327334422|gb|EGE76133.1| replicative DNA helicase [Propionibacterium acnes HL097PA1]
 gi|327448718|gb|EGE95372.1| replicative DNA helicase [Propionibacterium acnes HL043PA1]
 gi|327449087|gb|EGE95741.1| replicative DNA helicase [Propionibacterium acnes HL043PA2]
 gi|327450377|gb|EGE97031.1| replicative DNA helicase [Propionibacterium acnes HL013PA2]
 gi|327455536|gb|EGF02191.1| replicative DNA helicase [Propionibacterium acnes HL087PA3]
 gi|327456193|gb|EGF02848.1| replicative DNA helicase [Propionibacterium acnes HL083PA2]
 gi|327457558|gb|EGF04213.1| replicative DNA helicase [Propionibacterium acnes HL092PA1]
 gi|328756799|gb|EGF70415.1| replicative DNA helicase [Propionibacterium acnes HL087PA1]
 gi|328757688|gb|EGF71304.1| replicative DNA helicase [Propionibacterium acnes HL020PA1]
 gi|328759082|gb|EGF72698.1| replicative DNA helicase [Propionibacterium acnes HL025PA2]
 gi|328762191|gb|EGF75687.1| replicative DNA helicase [Propionibacterium acnes HL099PA1]
 gi|332676632|gb|AEE73448.1| replicative DNA helicase [Propionibacterium acnes 266]
          Length = 448

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           S    +      +   +    E ++L  +++    + +  +E+  + +     + +++ +
Sbjct: 2   SSAPAEPGPSLDRNPPQDIDAEKSVLGAMLSSKDAIADVVEEIKGVDFYRPGHELIFNTI 61

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
              +              L  RG      +L+R      L    T   +      Y + +
Sbjct: 62  TDLYGRGDPADTVTTADELDRRG------ELERAGGRLYLAELLTNVTVTANAAYYAKIV 115

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           A     + + R+  E   +IAQ+  +G+ E
Sbjct: 116 A----EKAVLRRLVEASIRIAQMGYQGQGE 141


>gi|3834613|gb|AAC71025.1| homer-3 [Mus musculus]
          Length = 358

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 66/211 (31%), Gaps = 16/211 (7%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             RL +   +   E +  G     +         +    +  L + + +  P   E   L
Sbjct: 111 AARLAREKSQDGGEFTSTGLALASHQVPPSPLVSTNGPGEEKLFRSQSADTPGPTERERL 170

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +++  ++ + Q++        +   Q+L   L         +  +   QR       +
Sbjct: 171 KKMLSEGSVGEVQWEA-EFFALQD-SNQRLAGALREANAAATQWRQQLEVQRAEAELLRQ 228

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            + +L+ QV    + +   EA    V Q       L  R +   ++ + ++ Q       
Sbjct: 229 RVAELEAQVAVEPVRAGEKEATSQSVEQ-------LEARVQTKDQEIQTLKNQSTGTREA 281

Query: 609 GEAEKTAILISILH-------EVHIQIHQIE 632
            +  +       +        E+  Q+  +E
Sbjct: 282 PDTAEREETQQQVQDLETRNAELEQQLRAME 312


>gi|302039499|ref|YP_003799821.1| replicative DNA helicase [Candidatus Nitrospira defluvii]
 gi|300607563|emb|CBK43896.1| Replicative DNA helicase [Candidatus Nitrospira defluvii]
          Length = 445

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 61/182 (33%), Gaps = 21/182 (11%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           +  +++    +       E A+L  ++  PA+L    + + +  + ++  Q ++S +   
Sbjct: 1   MTMTTIEHPTMPPHDLDAERAILGAILLCPAVLATVGELVQETDFYDSHHQGIFSAMCRL 60

Query: 526 FVEQKYFLPEEIHQRLCERGF------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
                      + + L  RG          + +L   V  A   +          R+   
Sbjct: 61  ENAGGAIDHIVVAEELKRRGLLEKVGGSAAVAELIETVATAANVTTHCRVVQEKARRRAV 120

Query: 580 Q--ALALYKR----FRLLSRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +  A  L+ R       L    ++ E+ I     +        TA L++       ++H 
Sbjct: 121 RQMAFDLFTRSTDEQETLDALIDQAEQTIFGGQDLGQASSRITTAQLVNE------RLHH 174

Query: 631 IE 632
           +E
Sbjct: 175 LE 176


>gi|253565840|ref|ZP_04843294.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251944944|gb|EES85382.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 326

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 94/286 (32%), Gaps = 16/286 (5%)

Query: 12  LIHIPISNLIGQYVDWDRRKTNAVKGDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70
                IS  I  Y+++   +    KG Y     P  ++ TPSF  + +   +  +     
Sbjct: 4   KEANNIS--IKDYLNFLGIQPVTEKGSYGMYRSPLREDNTPSFKVDYNANLWCDYGTGEG 61

Query: 71  GDHLSFLSALLGCSFIESVQRLAA-------IAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           G  +  +     C+   ++ RL           G  LP  D K +    I+   I+ ++ 
Sbjct: 62  GTLIDLVMKQHQCNAYGAICRLEQGNTASFSFHGKDLPERDTKRQATSPIEIRRIQPLQN 121

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
                +   +         Y+ E          F L +  DS      + R KG + + I
Sbjct: 122 PALMRYLQERGISPGTAAPYVQEMYYRIGGKPYFALAFKNDSGGYELRNPRFKGSTSKDI 181

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIF-PIRSSRGQVIAFG----GRTLSKGESVKYLNSPE 238
                  +  ++   ++ F + L F  IR  +   ++         L+   +      P 
Sbjct: 182 THIRQQGEPRDTCFVFEGFLDFLSFLTIRQQKSPNMSCTDWQDYVILNSTANTDKALYPL 241

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284
               H    L N   A     ++IR++ +        L  G+ D+ 
Sbjct: 242 AGYGHIHCMLDN-DEAGRKAVEAIRQEYKWRVRDASYLYSGHNDLN 286


>gi|225026719|ref|ZP_03715911.1| hypothetical protein EUBHAL_00971 [Eubacterium hallii DSM 3353]
 gi|224955980|gb|EEG37189.1| hypothetical protein EUBHAL_00971 [Eubacterium hallii DSM 3353]
          Length = 863

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 69/201 (34%), Gaps = 2/201 (0%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI + +   R ++           +  +++    + ++     + ++AL+   +   
Sbjct: 318 YRQYIEKDAALERRFQPVMVDEPTVEDTISILRGLKDRYEVYHGVKIADSALVSAAVLSN 377

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD- 554
             + +++     I   +     + + L S   +      + +   + E    +   +L  
Sbjct: 378 RYITDRFLPDKAIDLVDEACAMIKTELDSLPADLDEVQRKIMQLEIEEAALKKETDRLSV 437

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            ++ +     A         +  + Q  +  +R   L  + E +  +I       +  K 
Sbjct: 438 ERLENLQKELAELREEFKSKKASWDQEKSAVERVSKLKEEIESLNNEIQIAQRNYDLNKA 497

Query: 615 AIL-ISILHEVHIQIHQIESQ 634
           A L    L E+  Q+ + E  
Sbjct: 498 AELQYGKLPELQRQLEEAEES 518


>gi|220909682|ref|YP_002484993.1| hypothetical protein Cyan7425_4322 [Cyanothece sp. PCC 7425]
 gi|219866293|gb|ACL46632.1| hypothetical protein Cyan7425_4322 [Cyanothece sp. PCC 7425]
          Length = 811

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 23/103 (22%)

Query: 41  ACCPFHDEKTP-SFHCNDSKGFY--YCFSCHVKGDHLSFLSALLGCS----------FIE 87
            CCP+HD ++  +F+ ++  G +   C +C++ GD +++       +          F E
Sbjct: 277 GCCPWHDSQSGTAFYVDEVDGIWLWRCPACNIGGDPVAY---RDRLNSGDGHPTGKAFTE 333

Query: 88  SVQRLAAIAGVPL-------PVVDPKIEKKEKIQTDLIRLIEV 123
            V+ LA  AG+ L         +  K   K++  +      E 
Sbjct: 334 IVEELARKAGLSLLHEAQSKTKISAKNPGKKERVSKRYSANEF 376


>gi|17229128|ref|NP_485676.1| regulatory protein [Nostoc sp. PCC 7120]
 gi|17135456|dbj|BAB78002.1| regulatory protein [Nostoc sp. PCC 7120]
          Length = 1381

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 70/225 (31%), Gaps = 6/225 (2%)

Query: 402  AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
             EL          I+D+K R     ++ D+L +L  + +           +N        
Sbjct: 819  PELLSEALAVAREIEDEKYRAEALSSLADKLPELLPEALAAAREIEDEKYRNDALSSLAN 878

Query: 462  PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
                 + S  V  +  K    R   L       P +L E      +I+++++  Q L S 
Sbjct: 879  KLPPELLSEAVAVREIKDEKYRAYILSSLAAKLPELLPEALAAAREIQFESSRAQALRSL 938

Query: 522  LFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
                       L   I   + +  +  + L+ L  ++    L      A   ++  G  +
Sbjct: 939  ADKFPELLPEALAAAI--EIQDEEYRAQALRSLADKLPPELLPEVV--AATREIEYGEFR 994

Query: 581  ALALYKRFRLLSRQKEEIEKQIAQVT-AKGEAEKTAILISILHEV 624
            A  L      L     E      ++      ++  + L +   EV
Sbjct: 995  ASILGSLAVQLPELLPEAVAAAREIEYDAFHSDALSNLANKFPEV 1039



 Score = 40.3 bits (92), Expect = 0.94,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 84/259 (32%), Gaps = 34/259 (13%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI---TEHS 444
                    +  D+  EL          I+D+  R    +++ D+L +L  + +    E  
Sbjct: 1086 YYRAYVLISLADKFPELLPEAVAAARGIQDEYPRSLALRSLADKLPELLPEALAATREIQ 1145

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH--PAILQEQY 502
              G     N      K P + L ++     ++  +     A  L +L +   P +L E  
Sbjct: 1146 DDGHNRAYNLSDLADKLPPELLPKALAAAREIQDEYYRANA--LSSLADKLPPELLPEAL 1203

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
               A     + E +     L +   +    LPE +             +++  +   A +
Sbjct: 1204 A--AAREIQDEEYRA--DVLSNLADKLPELLPEAVAA----------ARKIQDEEYRADV 1249

Query: 563  WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             S   +     + +    A           R+ ++ E +   ++   +   E     ++ 
Sbjct: 1250 LSNLADKLPELLPEAVAAA-----------RKIQDEEYRADVLSNLADKLPELLPEAVAA 1298

Query: 621  LHEVHIQIHQIESQEAMIE 639
               +  + H+ +   ++++
Sbjct: 1299 ARGIQDEKHRAQVLSSLVD 1317



 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/257 (10%), Positives = 78/257 (30%), Gaps = 27/257 (10%)

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
            EL          I+D++ R     ++ D+L +L  + +          ++         
Sbjct: 599 PELLPEALVAAREIQDEEFRAQVLGSLADKLPELLPEALATARKTEDESRRARILSSLAV 658

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINH-PAILQEQYQELADIRYDNNELQKLW- 519
                +    V      +       +L  L++  P +L E      +I    N    L  
Sbjct: 659 KLPPELLPEAVAAAREIQDEDSRVFVLSILVDKLPELLPEALAAAREIENSYNRRDALIS 718

Query: 520 -----------SFLFSDFVEQKYFLPEEIHQRLCERGFGEL------LKQLDRQVRDAGL 562
                        + +    Q      E+   L ++    L       ++++ +   A +
Sbjct: 719 LANKLPPELLPEAVAAAREIQDEANRAEVLGSLSDKLPELLPEALAAAREIEFESSRAYI 778

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
            S+  +     + +       +   +      + +I   +A        E  +  +++  
Sbjct: 779 LSSLADKLPELLPEALAATREIQNGYN-----RADILSSLADKLP---PELLSEALAVAR 830

Query: 623 EVHIQIHQIESQEAMIE 639
           E+  + ++ E+  ++ +
Sbjct: 831 EIEDEKYRAEALSSLAD 847


>gi|295980942|emb|CBJ57190.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 361

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 28/117 (23%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
           I++    I I ++            N +   +          P HD    SF    +   
Sbjct: 3   IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
           +  FS  ++GD + F+  + G SF E++  L+            +  ++++ +    
Sbjct: 47  FKWFSRDIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAIQEKRERPFYY 97


>gi|124514288|gb|EAY55802.1| DnaB helicase [Leptospirillum rubarum]
          Length = 463

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 64/185 (34%), Gaps = 21/185 (11%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
               ++     K   +    E + L +++ +  ++ E    L +  +  +  +K++  + 
Sbjct: 2   SPGGKTRAQILKNLPQSLEAEKSFLGSILLNNEVMTEIGDALKEDDFSLDAHRKIYMTMR 61

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGEL------LKQL-------------DRQVRDAGLWS 564
               ++       +   L ++G+  L      +++L                +++ G++ 
Sbjct: 62  EMSEKRVPVDSVTLADALNKKGWSGLTGGPTYIEELSLIVPTAANAKHYANLLKEKGIYR 121

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI--EKQIAQVTAKGEAEKTAILISILH 622
               +     R+GY+++  +     L  R+  EI   +        G+ +        L 
Sbjct: 122 KLILSAEEIARKGYEESEDVEVLLDLAERKILEIGANRTTRGFVKVGDVQYIEAQYKRLE 181

Query: 623 EVHIQ 627
           E+  +
Sbjct: 182 ELRAR 186


>gi|81300134|ref|YP_400342.1| primary replicative DNA helicase [Synechococcus elongatus PCC 7942]
 gi|81169015|gb|ABB57355.1| primary replicative DNA helicase [Synechococcus elongatus PCC 7942]
          Length = 454

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           Q L    L       +    E A+L +++  P  +      L+   + N+  + ++    
Sbjct: 3   QELRFDILPDRHEPPQNVEAEEAILGSILLDPEAIGRIADVLSPEAFYNSNHRDIYRAAV 62

Query: 524 SDFVEQKYFLPEEIHQRLCER-------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
               + +      +   L +        G   L K +DR V  A +           +R+
Sbjct: 63  QLHSQGQPTDLTSLTTSLQDAGQLDKVGGQSRLAKLVDRVVTTANVEQYAQLVIDKFLRR 122

Query: 577 GYQQALALYKRF-----RLLSRQKEEIEKQI 602
              QA     +      + L    ++ E+++
Sbjct: 123 QLIQAGNSVIQLGYDTTKPLEAVLDQAEQKV 153


>gi|56750237|ref|YP_170938.1| replicative DNA helicase [Synechococcus elongatus PCC 6301]
 gi|56685196|dbj|BAD78418.1| replicative DNA helicase [Synechococcus elongatus PCC 6301]
          Length = 453

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           Q L    L       +    E A+L +++  P  +      L+   + N+  + ++    
Sbjct: 2   QELRFDILPDRHEPPQNVEAEEAILGSILLDPEAIGRIADVLSPEAFYNSNHRDIYRAAV 61

Query: 524 SDFVEQKYFLPEEIHQRLCER-------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
               + +      +   L +        G   L K +DR V  A +           +R+
Sbjct: 62  QLHSQGQPTDLTSLTTSLQDAGQLDKVGGQSRLAKLVDRVVTTANVEQYAQLVIDKFLRR 121

Query: 577 GYQQALALYKRF-----RLLSRQKEEIEKQI 602
              QA     +      + L    ++ E+++
Sbjct: 122 QLIQAGNSVIQLGYDTTKPLEAVLDQAEQKV 152


>gi|221501947|gb|EEE27698.1| regulator of chromosome condensation domain-containing protein,
            putative [Toxoplasma gondii VEG]
          Length = 1819

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 78/236 (33%), Gaps = 29/236 (12%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV---KGKLSKKPS 481
             Q +++ L +  Q+   + +   +      + R +   S    Q +L    K K S++  
Sbjct: 1188 IQTLQEELDEEAQQSHKDLTQVLQKLSFAEQERAKLAHSLATAQEALQTFQKNKSSQERL 1247

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             REA+ L   +       EQ  +L        E +   + L    VE +     E+++R 
Sbjct: 1248 EREASALRQQLKSQK--SEQAHQLRQAEEAIGEWRDAHAKLQEALVETEEHRKSEVNER- 1304

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             +     L KQ+ +   +        +       +  +Q      R      + +E+E  
Sbjct: 1305 -QAEVDHLKKQVRQLEEELQQVKDQVDMTSQSTIEAERQ------RRVAAEERVDELEAA 1357

Query: 602  IAQVTAKG----------------EAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
            + ++ A                    E+    +  + E+  ++ +   +    E F
Sbjct: 1358 LNELAADFAASKRASTRQKRDLDSMTEEKQRALQEIEELREELQKARDEIGQGEIF 1413



 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 35/342 (10%), Positives = 97/342 (28%), Gaps = 10/342 (2%)

Query: 285  SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344
            S   A  Q             +           +     D    + A +   +++  L  
Sbjct: 1480 SAHPAPTQACSECKNLTAELLRSAEHRDTMNSQIEALQSDLTAHQNAARDQQVLIHELQM 1539

Query: 345  GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
               V     +      +   C   T                              +    
Sbjct: 1540 ELGVYKQRQAAELKVVTEQVCAVHTYRIDCSEGLQNFFRWEICYLYRCAVPVEARDGGIG 1599

Query: 405  EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
              +L      +    ++  Y +     L++  ++   +            +  ++    +
Sbjct: 1600 FRNLAEVSKWLLSGFVQKNYLEKKVHDLKEAKEESDEKLFSLQEKLTSLKKEEEEHRIRE 1659

Query: 465  RLMQSSLVKGKLSKKPSLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLF 523
            RL+ + + + +           L   L +H  + +      L D    +   +     + 
Sbjct: 1660 RLVTAQVREKQCGPLCHTV-DQLFQVLRHHVDLKVSASEDALTDSSGSDGSSEH---AVL 1715

Query: 524  SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
            ++      +  E +H  +CE+    LL   +       L+  T + N  +++    +A  
Sbjct: 1716 AESKAISVWSFEAVHA-ICEKWNIALLVDTELHKLRDRLFDLTRKEN--ELKHQLVEAAD 1772

Query: 584  LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
              +      ++ EE+E+++ +   + +AE+   ++    +V 
Sbjct: 1773 HQQTALQARQKLEELEEKLRRT--QMDAERNEKMMQEAQQVR 1812


>gi|237844347|ref|XP_002371471.1| regulator of chromosome condensation domain-containing protein
            [Toxoplasma gondii ME49]
 gi|211969135|gb|EEB04331.1| regulator of chromosome condensation domain-containing protein
            [Toxoplasma gondii ME49]
 gi|221481252|gb|EEE19649.1| regulator of chromosome condensation domain-containing protein,
            putative [Toxoplasma gondii GT1]
          Length = 1858

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 78/236 (33%), Gaps = 29/236 (12%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL---VKGKLSKKPS 481
             Q +++ L +  Q+   + +   +      + R +   S    Q +L    K K S++  
Sbjct: 1188 IQTLQEELDEEAQQSHKDLTQVLQKLSFAEQERAKLAHSLATAQEALHTFQKNKSSQERL 1247

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             REA+ L   +       EQ  +L        E +   + L    VE +     E+++R 
Sbjct: 1248 EREASALRQQLKSQK--SEQAHQLRQAEEAIGEWRDAHAKLQEALVETEEHRKSEVNER- 1304

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             +     L KQ+ +   +        +       +  +Q      R      + +E+E  
Sbjct: 1305 -QAEVDHLKKQVRQLEEELQQVKDQVDMTSQSTIEAERQ------RRVAAEERVDELEAA 1357

Query: 602  IAQVTAKG----------------EAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
            + ++ A                    E+    +  + E+  ++ +   +    E F
Sbjct: 1358 LNELAADFAASKRASTRQKRDLDSMTEEKQRALQEIEELREELQKARDEIGQGEIF 1413


>gi|81299898|ref|YP_400106.1| ATPase [Synechococcus elongatus PCC 7942]
 gi|81168779|gb|ABB57119.1| ATPase [Synechococcus elongatus PCC 7942]
          Length = 883

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 71/204 (34%), Gaps = 4/204 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI + +   R +++    +     +  +++    + ++     + + AL+   +   
Sbjct: 330 YRQYIEKDAALERRFQQVFVDQPTVEDTISILRGLKERYEVHHGVRISDNALVAAAVLST 389

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S   E      + +   +      +    L  
Sbjct: 390 RYISDRFLPDKAIDLVDESAARLKMEITSKPEELDEIDRKILQLEMERLSLQKE-SDLAS 448

Query: 556 QVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           Q R   L     +       +   +Q    +    + +  + +++   I Q     +  K
Sbjct: 449 QERLQRLEKELADLKEEQRSLSSQWQAEKDVITDIQSVKEEIDQVNLLIQQAERDYDLNK 508

Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636
            A L    L E+  +++++E   A
Sbjct: 509 AAELKYGKLTELQRKLNEMEGGLA 532


>gi|317474283|ref|ZP_07933559.1| hypothetical protein HMPREF1016_00538 [Bacteroides eggerthii
          1_2_48FAA]
 gi|316909593|gb|EFV31271.1| hypothetical protein HMPREF1016_00538 [Bacteroides eggerthii
          1_2_48FAA]
          Length = 659

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 32 TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF--SCHVKGDHLSFLSA 79
             V  +Y A CP   +K      +   GFY+CF   C   G    F   
Sbjct: 13 RKNVGKNYLALCPKCGKKH--LSISRETGFYHCFYAGCDFHGRLKDFWEE 60


>gi|218130758|ref|ZP_03459562.1| hypothetical protein BACEGG_02349 [Bacteroides eggerthii DSM
          20697]
 gi|217987102|gb|EEC53433.1| hypothetical protein BACEGG_02349 [Bacteroides eggerthii DSM
          20697]
          Length = 659

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 32 TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF--SCHVKGDHLSFLSA 79
             V  +Y A CP   +K      +   GFY+CF   C   G    F   
Sbjct: 13 RKNVGKNYLALCPKCGKKH--LSISRETGFYHCFYAGCDFHGRLKDFWEE 60


>gi|156555121|ref|XP_001604740.1| PREDICTED: similar to CG31045-PA [Nasonia vitripennis]
          Length = 2157

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 89/275 (32%), Gaps = 15/275 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
            +++    ++  +D   ++  +    +        +   K   +  ++ + +       + 
Sbjct: 1477 YKQRYQHAMRELDFTKRKMAQQHEDDLEQLVGLKKQLEKKLADAYEEVEEQRQVVGQWKR 1536

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ---SSLVKGKLSKKPSLREAAL 487
            R+Q+L  +             +N     ++       Q     L + K  ++   RE  +
Sbjct: 1537 RVQKLNGEMHDLRLLLEEQTARNNLLEKKQRKFDSETQNLMDDLRQEKAQRERLAREKEI 1596

Query: 488  LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV----EQKYFLPEEIHQRLCE 543
               +     I Q       +I      L  L   L         E++    ++    L +
Sbjct: 1597 --AIAEKFTIEQNLSDARLEIELKEERLHTLSQELEELTFGGKTEEEVAQLKKAKHELEK 1654

Query: 544  R--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +     E L  L  QV+         E +I   R+  ++ +   +R   L   +    K+
Sbjct: 1655 KLKDQEEELDDLAGQVQLLEQAKLRLEMSIEQQRKEMRKEM--QQRDEELEDVRGSAMKK 1712

Query: 602  IAQVTAKGEAEKTAIL--ISILHEVHIQIHQIESQ 634
            +  + A+ E E       +   HE+  ++  +E Q
Sbjct: 1713 VKALEAQLENEHEERTIVLREKHELERRLVALEDQ 1747



 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 87/251 (34%), Gaps = 31/251 (12%)

Query: 407  HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             + +    +++Q  R    +  + +     Q  + +        ++ AR ++     +  
Sbjct: 1544 EMHDLRLLLEEQTARNNLLEKKQRKFDSETQNLMDDLRQEKAQRERLAREKEIAIAEKFT 1603

Query: 467  MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN------ELQKLWS 520
            ++ +L   +L     L+E  L               QEL ++ +         +L+K   
Sbjct: 1604 IEQNLSDARLE--IELKEERL-----------HTLSQELEELTFGGKTEEEVAQLKKAKH 1650

Query: 521  FLFSDFVEQKY-FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR---- 575
             L     +Q+          +L E+    L   +++Q ++        +  + DVR    
Sbjct: 1651 ELEKKLKDQEEELDDLAGQVQLLEQAKLRLEMSIEQQRKEMRKEMQQRDEELEDVRGSAM 1710

Query: 576  ----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---LISILHEVHIQI 628
                    Q    ++   ++ R+K E+E+++  +  +   E+ A       +  ++    
Sbjct: 1711 KKVKALEAQLENEHEERTIVLREKHELERRLVALEDQDRTERAAEAETTQRLKRDLKRTR 1770

Query: 629  HQIESQEAMIE 639
              +   + M+E
Sbjct: 1771 ALLRDAQTMLE 1781


>gi|240256182|ref|NP_195370.5| heat shock protein binding [Arabidopsis thaliana]
 gi|332661266|gb|AEE86666.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]
          Length = 1422

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/342 (9%), Positives = 103/342 (30%), Gaps = 15/342 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
               LL     ++               +    +    +          +  E    + +
Sbjct: 528 KHRNLLKPEENKLFTEKPAKQKKELLCEEKTKRIQNQQLDKKTHQKAAETNQECVYDWEQ 587

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K         +L +   L     +    +  + +    +        IK+ +LR   
Sbjct: 588 NARKLREALGNESTLEVSVELNGNGKKMEMRSQSETKLNEPLKRMEEETRIKEARLREEN 647

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +   +R+     +            +K  + ++ +  ++   ++   + K  ++  ++E
Sbjct: 648 DRR--ERVAVEKAENEKRLKAALEQEEKERKIKEAREKAENERRAVEAREKAEQERKMKE 705

Query: 485 AALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVE-------QKYFLP 534
              L   +      +++ +          +  + +++      +  E       +K  L 
Sbjct: 706 QQELELQLK--EAFEKEEENRRMREAFALEQEKERRIKEAREKEENERRIKEAREKAELE 763

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           + +   L +      +K+   +  +        E    + +          +R    +R+
Sbjct: 764 QRLKATLEQEEKERQIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETRE 823

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ-IESQE 635
           KEE +K++ +     E EK  I      E+  ++ + +E +E
Sbjct: 824 KEENKKKLREAIELEEKEKRLIEAFERAEIERRLKEDLEQEE 865


>gi|218281866|ref|ZP_03488205.1| hypothetical protein EUBIFOR_00773 [Eubacterium biforme DSM 3989]
 gi|218217155|gb|EEC90693.1| hypothetical protein EUBIFOR_00773 [Eubacterium biforme DSM 3989]
 gi|291540554|emb|CBL13665.1| KaiC [Roseburia intestinalis XB6B4]
 gi|295110770|emb|CBL24723.1| KaiC. [Ruminococcus obeum A2-162]
          Length = 638

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 52/185 (28%), Gaps = 32/185 (17%)

Query: 1   MNYPRDFIKDLLI-HIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           M Y  + I  +      + + +  Q     +                HD          S
Sbjct: 4   MQYTEEQI--IRANQTDLVSFLSAQGEQLGKSGKEYRWKK-------HD------SVTVS 48

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG------VPLPVVDPKIEKKEK 112
              +Y  S    G  + F+      +F E+V+ L    G       P P  D ++ +KE+
Sbjct: 49  GNRWYRHSQGRGGYPVDFVMEFYNATFPEAVKMLTGEEGEGRNSTCPAPSPDFRLPEKEE 108

Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172
               +IR +               +K +       G      +   + +       +  +
Sbjct: 109 NNDRIIRYLTE---------NRGIEKNMVEEWIGSGDIYEEKKHHNVVFVGRDADGIPRY 159

Query: 173 LRQKG 177
              +G
Sbjct: 160 AHCRG 164


>gi|124515128|gb|EAY56639.1| probable DNA helicase [Leptospirillum rubarum]
 gi|206603709|gb|EDZ40189.1| Probable DNA helicase [Leptospirillum sp. Group II '5-way CG']
          Length = 455

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 48/139 (34%), Gaps = 17/139 (12%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  L+  L+  P +L++     +   +     +++   +     ++    P  +  RL +
Sbjct: 23  EKNLIWCLLREPGLLRDDSLSFSVEDFHFAPHRRIIRAIIDLDRDEITVDPGMVRNRLED 82

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEIEKQI 602
                 L  L        +W++ + A          +  A   R   + R+   + + ++
Sbjct: 83  PSDRAYLDSL-----IDDMWASPSNA----------KFYAEKLREVAVRRRALFDAD-RL 126

Query: 603 AQVTAKGEAEKTAILISIL 621
            +  + G  E  A +   L
Sbjct: 127 TRAASSGVPEDIAKVYGEL 145


>gi|187478660|ref|YP_786684.1| replicative DNA helicase [Bordetella avium 197N]
 gi|115423246|emb|CAJ49779.1| replicative DNA helicase [Bordetella avium 197N]
          Length = 457

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 62/196 (31%), Gaps = 15/196 (7%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
              S L   ++       E ++L  L+   A        L +  +  ++ + +W  +   
Sbjct: 4   PADSQLEYLRVPPHSIEAEQSVLGGLLLDNAAWDRIADVLGEEDFYRHDHRIIWQHIARL 63

Query: 526 FVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDV----- 574
               +      +++ L   G  E       L  L      A       E           
Sbjct: 64  IGLARPADVITVNESLVSAGKSEEVGGLAYLNALAHNTPSAANIRRYAEIVAERATLRKL 123

Query: 575 --RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQ 630
                   A AL  + +   +  +E E ++ ++  +G         +  +L +V  +I +
Sbjct: 124 VTIADEISAAALNPQGKEARQLLDEAESKVFKIAQEGARGSGGFQEIQPLLTQVVERIDE 183

Query: 631 IESQEAMIEGFGKMSG 646
           +  +E+  +  G  +G
Sbjct: 184 LYHRESESDVTGVPTG 199


>gi|313115259|ref|ZP_07800738.1| conserved domain protein [Faecalibacterium cf. prausnitzii
          KLE1255]
 gi|310622428|gb|EFQ05904.1| conserved domain protein [Faecalibacterium cf. prausnitzii
          KLE1255]
          Length = 623

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 15/98 (15%)

Query: 1  MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          MNY +  I      + + + +  Q     +        +       HD    S     +K
Sbjct: 1  MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97
           F +  S    G  + F+    G SF E+VQ L    G
Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQMLTGENG 84


>gi|283796494|ref|ZP_06345647.1| toprim domain protein [Clostridium sp. M62/1]
 gi|291075908|gb|EFE13272.1| toprim domain protein [Clostridium sp. M62/1]
          Length = 623

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 15/98 (15%)

Query: 1  MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          MNY +  I      + + + +  Q     +        +       HD    S     +K
Sbjct: 1  MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97
           F +  S    G  + F+    G SF E+VQ L    G
Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQMLTGENG 84


>gi|153810265|ref|ZP_01962933.1| hypothetical protein RUMOBE_00646 [Ruminococcus obeum ATCC 29174]
 gi|153813917|ref|ZP_01966585.1| hypothetical protein RUMTOR_00124 [Ruminococcus torques ATCC
          27756]
 gi|145848313|gb|EDK25231.1| hypothetical protein RUMTOR_00124 [Ruminococcus torques ATCC
          27756]
 gi|149833444|gb|EDM88525.1| hypothetical protein RUMOBE_00646 [Ruminococcus obeum ATCC 29174]
          Length = 623

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 15/98 (15%)

Query: 1  MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          MNY +  I      + + + +  Q     +        +       HD    S     +K
Sbjct: 1  MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97
           F +  S    G  + F+    G SF E+VQ L    G
Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQMLTGENG 84


>gi|298705512|emb|CBJ28779.1| Cellulose synthase (UDP-forming), family GT2 [Ectocarpus
           siliculosus]
          Length = 2018

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/363 (11%), Positives = 100/363 (27%), Gaps = 28/363 (7%)

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           A      + L   L     R    +   +    +        A     +V          
Sbjct: 64  AHHDEARAVLAKKLQVENARTGRVIKTNLGKYANPKLAQGAKAAVLASVVEYLNGEEFVR 123

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
                   + PD       ++   ++                              E   
Sbjct: 124 IVAAPLNYQSPDFVRAMEAESGVMEISFSPTNARQRSMASLPVGAPDYDSKMALLQEQKA 183

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
                 ++++ LR    Q + +R  +   +     +          R  + +      ++
Sbjct: 184 IEQQQRMEEEALR---RQEMLERENKAAMEQDAADALAMANAANQRRLEEMQRQQDEELE 240

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR------------YDNNELQ 516
               +    ++   REA L    + H   L     E+   R                EL+
Sbjct: 241 EQRRQLDEHQEHLRREAELAR--MRHKEELDLHRAEMEREREAVEARQAEAKRLQEEELE 298

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEAN---- 570
           K    +     E      +E+ +   E  R   EL K  +    + G+ ++ +++     
Sbjct: 299 KQRQEMRRKHEEDMELQRQELARHAEEVARHKAELAKHNEGVGLENGVLTSQSDSPGVVH 358

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE---KTAILISILHEVHIQ 627
                +  ++AL   +R    +  +E+  +++ +  AK + E   +   + + L  + ++
Sbjct: 359 HQQEARLEKEALEEMRRRE--NEAEEDERRRLQEAVAKHQEETRLEAERVKAELEALKLE 416

Query: 628 IHQ 630
              
Sbjct: 417 REA 419



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 69/242 (28%), Gaps = 15/242 (6%)

Query: 411 CINHIKDQKLR-YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
                 D+  +  +  + ++    +       +         +  +    K  + +L Q 
Sbjct: 44  LNAKHLDEIKKAEHLKKKLKAHHDEARAVLAKKLQVENARTGRVIKTNLGKYANPKLAQG 103

Query: 470 SLVKGKLSKKPSLREAALLLTL---INH--PAILQEQYQELADIRYDNNELQKLWSFLFS 524
           +      S    L     +  +   +N+  P  ++    E   +    +        + S
Sbjct: 104 AKAAVLASVVEYLNGEEFVRIVAAPLNYQSPDFVRAMEAESGVMEISFSPTNARQRSMAS 163

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
             V    +  +     L E+   E  ++++ +               ++       A+A 
Sbjct: 164 LPVGAPDYDSK--MALLQEQKAIEQQQRMEEEALRRQEMLERENKAAMEQDAADALAMAN 221

Query: 585 YKRFRLLSR-------QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
               R L         + EE  +Q+ +       E     +    E+ +   ++E +   
Sbjct: 222 AANQRRLEEMQRQQDEELEEQRRQLDEHQEHLRREAELARMRHKEELDLHRAEMEREREA 281

Query: 638 IE 639
           +E
Sbjct: 282 VE 283



 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/98 (10%), Positives = 30/98 (30%), Gaps = 3/98 (3%)

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            QR  +    E  +QLD         +        +          + +    +  ++ E
Sbjct: 231 MQRQQDEELEEQRRQLDEHQEHLRREAELARMRHKEELD--LHRAEMEREREAVEARQAE 288

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            + ++ +   + + ++         E+  Q     ++E
Sbjct: 289 AK-RLQEEELEKQRQEMRRKHEEDMELQRQELARHAEE 325


>gi|116334960|ref|YP_802455.1| putative DNA primase [Candidatus Carsonella ruddii PV]
 gi|116235241|dbj|BAF35089.1| putative DNA primase [Candidatus Carsonella ruddii PV]
          Length = 257

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGD-HLSFL 77
          CPFH++   S        FY C+ C  +G+    FL
Sbjct: 5  CPFHNDTNASLSI--KNNFYICYGCKKRGNTTFKFL 38


>gi|33593747|ref|NP_881391.1| replicative DNA helicase [Bordetella pertussis Tohama I]
 gi|33597060|ref|NP_884703.1| replicative DNA helicase [Bordetella parapertussis 12822]
 gi|33600904|ref|NP_888464.1| replicative DNA helicase [Bordetella bronchiseptica RB50]
 gi|33563820|emb|CAE43064.1| DNA helicase [Bordetella pertussis Tohama I]
 gi|33566511|emb|CAE37767.1| DNA helicase [Bordetella parapertussis]
 gi|33568504|emb|CAE32416.1| DNA helicase [Bordetella bronchiseptica RB50]
 gi|332383149|gb|AEE67996.1| replicative DNA helicase [Bordetella pertussis CS]
          Length = 457

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 63/196 (32%), Gaps = 15/196 (7%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                L   ++       E ++L  L+   A        L +  +  ++ + +W  +   
Sbjct: 4   PADPQLEYLRVPPHSIEAEQSVLGGLLLDNAAWDRIADVLVEEDFYRHDHRLIWHHIARL 63

Query: 526 FVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDV----- 574
               +      +++ L   G  E       L  L      A       E           
Sbjct: 64  IGLARPADVITVNESLASAGKSEEVGGLAYLNALAHNTPSAANIRRYAEIVRERAMLRKL 123

Query: 575 --RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQ 630
                   A AL  + +   +  +E E ++ ++  +GE  +     +  +L +V  +I +
Sbjct: 124 VSIADEISAAALNPQGKEARQLLDEAESKVFKIAQEGERGSAGFQEIQPLLTQVVERIDE 183

Query: 631 IESQEAMIEGFGKMSG 646
           +  +E+  +  G  +G
Sbjct: 184 LYHRESESDVTGVPTG 199


>gi|268680215|ref|YP_003304646.1| replicative DNA helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618246|gb|ACZ12611.1| replicative DNA helicase [Sulfurospirillum deleyianum DSM 6946]
          Length = 476

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 61/158 (38%), Gaps = 14/158 (8%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E ++L +++ +PA  ++    ++   +     + ++  + +   E      E I ++L +
Sbjct: 10  ERSVLSSILFNPATFEDVAALISAKDFYLPSHRYIFEAMEACQREDLPIDEEFIKKKLNQ 69

Query: 544 R---GFGELLKQLD-----------RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +       +L+ L             ++++  +     +          ++ L   +   
Sbjct: 70  QSRFDEDAMLEILSTNPLPTTKAYVEEIKEKAIKRELVQLTSDIKEIAVEKDLPSTEVID 129

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           L+ ++  +I ++ +    +   E T   I+ +HE+  +
Sbjct: 130 LVQQKLYQITQENSSREFRESPEMTHATIAHIHEMKKR 167


>gi|93141242|sp|P53533|CLPB1_SYNE7 RecName: Full=Chaperone protein ClpB 1
          Length = 874

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 71/204 (34%), Gaps = 4/204 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI + +   R +++    +     +  +++    + ++     + + AL+   +   
Sbjct: 321 YRQYIEKDAALERRFQQVFVDQPTVEDTISILRGLKERYEVHHGVRISDNALVAAAVLST 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S   E      + +   +      +    L  
Sbjct: 381 RYISDRFLPDKAIDLVDESAARLKMEITSKPEELDEIDRKILQLEMERLSLQKE-SDLAS 439

Query: 556 QVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           Q R   L     +       +   +Q    +    + +  + +++   I Q     +  K
Sbjct: 440 QERLQRLEKELADLKEEQRSLSSQWQAEKDVITDIQSVKEEIDQVNLLIQQAERDYDLNK 499

Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636
            A L    L E+  +++++E   A
Sbjct: 500 AAELKYGKLTELQRKLNEMEGGLA 523


>gi|307720262|ref|YP_003891402.1| primary replicative DNA helicase [Sulfurimonas autotrophica DSM
           16294]
 gi|306978355|gb|ADN08390.1| primary replicative DNA helicase [Sulfurimonas autotrophica DSM
           16294]
          Length = 481

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 54/158 (34%), Gaps = 14/158 (8%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E ++L +++  P+   E   EL+   +     Q ++  + +   + +    E I + L +
Sbjct: 11  ERSVLSSIVFEPSQFDELSVELSKDDFYLPAHQDIFQAMLTLLQKDQPIDEEFIKKELIK 70

Query: 544 RGF--GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR------------FR 589
                 ++L ++      +   +   E     +++         KR              
Sbjct: 71  AKKFDEQVLLEILSANPISNTKAYVDEIKDKSLKRHLLTLTTEIKRVTVEEELPSAEVVD 130

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           ++ ++  EI +       K   + T   +  + E+  +
Sbjct: 131 IVEKKLYEITQDNQTSDFKDSPKMTFDTMEYIKEMKAR 168


>gi|330991477|ref|ZP_08315428.1| Chaperone protein ClpB [Gluconacetobacter sp. SXCC-1]
 gi|329761496|gb|EGG77989.1| Chaperone protein ClpB [Gluconacetobacter sp. SXCC-1]
          Length = 867

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 72/214 (33%), Gaps = 5/214 (2%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R ++           +  +++    K +L     + + AL+       
Sbjct: 320 YRKYIEKDAALARRFQPVYVGEPTVADTISILRGIKEKYELHHGIRISDGALVAAATLSN 379

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S   E        I  ++      +      R
Sbjct: 380 RYITDRFLPDKAIDLVDEAASRLRMQIDSKPEELDELDRRLIQLKIEREAIRKEDDAASR 439

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIAQVTAKGEAEKT 614
           +         +      D       A          L  + ++I   I     KG+  + 
Sbjct: 440 ERLVKLEAELSELQEKSDALTAAWHAEKDRVNAVQKLQEEMDQIRSDIEIAQRKGDLARA 499

Query: 615 AILI-SILHEVHIQIHQIESQEA--MIEGFGKMS 645
           + L+ S L ++  QI + + +EA  + +G G +S
Sbjct: 500 SELMYSRLPQLQAQIAKAQ-EEADQISKGDGMVS 532


>gi|25011390|ref|NP_735785.1| hypothetical protein gbs1348 [Streptococcus agalactiae NEM316]
 gi|24412928|emb|CAD47007.1| unknown [Streptococcus agalactiae NEM316]
          Length = 361

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 8  IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
          I+++     I ++  +               Y    P HD    SF        +  FS 
Sbjct: 4  IEEVKQTA-ILDVAAR---LGYSFRRLSGQIYEH--PEHD----SFRIFADTNTFKWFSR 53

Query: 68 HVKGDHLSFLSALLGCSFIESVQRL 92
           ++GD + F+  + G SF E++  L
Sbjct: 54 DIQGDVIDFVQLVAGVSFKEALSYL 78


>gi|302877147|ref|YP_003845780.1| replicative DNA helicase [Clostridium cellulovorans 743B]
 gi|307687842|ref|ZP_07630288.1| replicative DNA helicase [Clostridium cellulovorans 743B]
 gi|302580004|gb|ADL54016.1| replicative DNA helicase [Clostridium cellulovorans 743B]
          Length = 443

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 50/161 (31%), Gaps = 15/161 (9%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +   +    E ++L ++IN      E  QEL+   +     + +++ +   F        
Sbjct: 6   RTLPQNIEAEQSVLASMINDKEATAEAAQELSAEDFYRESHKVIFTGIVELFFRDIPIDM 65

Query: 535 EEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-- 582
             + + L                 L   +              +  ++         +  
Sbjct: 66  ITLIEHLKSTDKLEASGGISYISTLSTSIASTANVHSYIKIVKDKAVLRRLIKVANEITE 125

Query: 583 ALYKRFRLLSRQKEEIEKQ---IAQVTAKGEAEKTAILISI 620
             Y +   +++  +  EK+   IAQ   + + E  A ++S 
Sbjct: 126 DSYTKQNDVAKVMDSAEKKIFDIAQNKTRNDYEPIASVLSR 166


>gi|254881367|ref|ZP_05254077.1| DNA primase [Bacteroides sp. 4_3_47FAA]
 gi|254834160|gb|EET14469.1| DNA primase [Bacteroides sp. 4_3_47FAA]
          Length = 295

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 35 VKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
              YW   P  +E+TPSF  ND    +Y F     GD +
Sbjct: 26 TSKQYWYLSPLRNERTPSFKVNDRLNEWYDFGAATGGDLV 65


>gi|153811442|ref|ZP_01964110.1| hypothetical protein RUMOBE_01834 [Ruminococcus obeum ATCC 29174]
 gi|149832569|gb|EDM87653.1| hypothetical protein RUMOBE_01834 [Ruminococcus obeum ATCC 29174]
          Length = 421

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 62/406 (15%), Positives = 112/406 (27%), Gaps = 54/406 (13%)

Query: 43  CPFHDEKTP--SFHCNDS---KGFYYCFSCHVKGDHLSFLSALLGC----SFIESVQRLA 93
           CPF  +     SF  + +   K  Y+C+ C   G+ L+  + L G      + E+ + + 
Sbjct: 33  CPFCGDLRGKCSFCIHKNGELKNVYHCYHCGASGNMLTLYAELSGIYGRNRYKEAYREIK 92

Query: 94  AIAGVPLPVVDPKIEKKE--------KIQTDLIR--------LIEVATDFFHHSLKNARD 137
                       +   +         K +  L          + +    F    LK    
Sbjct: 93  QALSFSGTDKSQQSTTRNGFVSIVPKKKRISLTEEEWDYRDHVYKEMLTF--LKLKETHR 150

Query: 138 KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT 197
           + L              E   L    ++  ++   L +KGF  + +    +  DGD  A 
Sbjct: 151 RNLLLRGLTLNEVRQMEERGFLSTDEENSVAIARKLLKKGFRLDGVPGFFINRDGDWEAA 210

Query: 198 SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNY 257
            Y +    L  P+R  + ++I F  R     +  KYL    + L                
Sbjct: 211 FYKKNNGYL-CPVRDGKERIIGFQIRLDVPLKERKYLWFTSSGLE------------KGT 257

Query: 258 LQKSIRKDVRRNSSSFIILVEGYMD---VLSLCQAGVQNVVSSLGTALTEYQLRLLWKLS 314
              S      +     + + EG +               V         E  LR L +  
Sbjct: 258 SSGSPAGMFGKIKDGTVYVTEGILKAEIAWMCTGNPYIGVPGVSNHKGLETVLRKLKEQG 317

Query: 315 -PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD-----SFIRCYGK 368
             R+  C+D D     +              G  +       GE P        IR    
Sbjct: 318 LKRVYECYDMDKMMELSCKHDEKSACRQCEHGIYLYH-----GECPKKRRKRDMIRKGCI 372

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
             +E     ++    + W  +             +  +  +   N 
Sbjct: 373 KLYEICEELNVSCKRVTWDTDASGTWMEHYKGVDDWILRKEEKGNW 418


>gi|37525016|ref|NP_928360.1| hypothetical protein plu1031 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784442|emb|CAE13326.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 459

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 49/162 (30%), Gaps = 8/162 (4%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L  L+       E    +    +     ++++  + + F          + + L 
Sbjct: 19  AEQAVLGGLMLDNDRWDEIVPLIHADDFFLPAHRRIYGAVATMFAANLPVDVLTLSEILE 78

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +    E LKQ+      A L   T     +       QA +  ++  +L  +  +     
Sbjct: 79  Q---KEQLKQVGGFAYLAELGKNTPSTANIVAYAEIVQAKSRLRQLIMLGNEMSD----- 130

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
                + +      +         +   +    ++ EG G +
Sbjct: 131 QAGHPRADFTDITEMAEQRLYTLSEQKAVRQDISLKEGLGLL 172


>gi|119026482|ref|YP_910327.1| chaperone clpB [Bifidobacterium adolescentis ATCC 15703]
 gi|118766066|dbj|BAF40245.1| chaperone clpB [Bifidobacterium adolescentis ATCC 15703]
          Length = 905

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 55/143 (38%), Gaps = 2/143 (1%)

Query: 496 AILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
            ++ E    L  ++     E+ +L   +    +E+ Y L    + +  E+   EL     
Sbjct: 394 DLVDEAAAHLRMELDSSPEEIDELRRQVDRLKMEKSYLLGNPKNDKATEKAEAELDDSAK 453

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            ++ D     A     +  ++  +      + R   L ++ +E+  Q  +   +G+  K+
Sbjct: 454 DRLADLNQEIADKSEKLNGLKARWDAEKNGHNRIGDLRKKLDELRTQAEKYEREGDLAKS 513

Query: 615 AIL-ISILHEVHIQIHQIESQEA 636
           + +    +  +  +I Q E  EA
Sbjct: 514 SAINYGEIPAIQKEIAQAEKNEA 536


>gi|323703286|ref|ZP_08114937.1| replicative DNA helicase [Desulfotomaculum nigrificans DSM 574]
 gi|323531751|gb|EGB21639.1| replicative DNA helicase [Desulfotomaculum nigrificans DSM 574]
          Length = 440

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 51/160 (31%), Gaps = 11/160 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++  +    E ++L  ++     + +  + L    +     + ++  +            
Sbjct: 4   RVPPQNIDAEQSVLGAMLLEREAIFKVMEFLKPDDFYKESHRIIYEAILELAESGSPVDL 63

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L ++G  E +  +      A L      A      + Y + +      + L+R 
Sbjct: 64  ITVTDLLRDKGDLEKVGGITYVATLANLVPTAANA------EYYARIVE----EKALTRA 113

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              +  +IA    +G  E    L+       +++ Q  S 
Sbjct: 114 LISVSTRIASRGYEG-VESPEELLDEAERSILELSQRRST 152


>gi|322385345|ref|ZP_08058990.1| hypothetical protein HMPREF9422_0355 [Streptococcus cristatus ATCC
           51100]
 gi|321270604|gb|EFX53519.1| hypothetical protein HMPREF9422_0355 [Streptococcus cristatus ATCC
           51100]
          Length = 361

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 28/117 (23%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
           I++    I I ++            N +   +          P HD    SF    +   
Sbjct: 3   IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
           +  FS  ++GD + F+  + G SF E++  L+            +  ++++ +    
Sbjct: 47  FKWFSRDIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAVQEKRERPFYY 97


>gi|110835729|ref|NP_034116.3| protein CASP isoform a [Mus musculus]
          Length = 1426

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 100/286 (34%), Gaps = 22/286 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + E + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 101 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q   ++        ++  ++   +   +          KL +     +   L T +   
Sbjct: 161 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQT--LQTALEKT 218

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +     +E++ + + L   +   E      E + ++L        L 
Sbjct: 219 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 278

Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598
              ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++
Sbjct: 279 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 338

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           E+Q+    +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 339 EQQLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 384


>gi|217077421|ref|YP_002335139.1| replicative DNA helicase [Thermosipho africanus TCF52B]
 gi|217037276|gb|ACJ75798.1| replicative DNA helicase [Thermosipho africanus TCF52B]
          Length = 445

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 44/148 (29%), Gaps = 9/148 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K +      E A+L +++  P  ++     ++   + +    +++  +   + E      
Sbjct: 2   KNAPHSIEAEQAILGSILIDPETIENIISIVSSRDFFDPRHAEIFKAIEELYDEGIPIDV 61

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I  RL  +G      +L+    +  +             + Y Q +      R L   
Sbjct: 62  ISICDRLKTKG------KLEMVGGEIYVAQLADIVPTSAHAEMYAQIVRDKSVLRAL--- 112

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILH 622
                K +    +  + +        + 
Sbjct: 113 INAASKVVEDAMSDRDVDDILDNAERVI 140


>gi|149922004|ref|ZP_01910446.1| hypothetical protein PPSIR1_18307 [Plesiocystis pacifica SIR-1]
 gi|149817169|gb|EDM76649.1| hypothetical protein PPSIR1_18307 [Plesiocystis pacifica SIR-1]
          Length = 640

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 20/154 (12%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           EA L   L   P +L E  +ELA+   +++ +Q++   L     E+     +E+ +R   
Sbjct: 259 EAQLESELEEDPWLLSEGMRELAEDLREHDIMQEVAEALAKSDAEEVEKELQELMERAEA 318

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI- 602
            G                      E     +R+  +      +      +  E+ E+++ 
Sbjct: 319 EGGD------------------LKEELDEALREMERSLSRTARENTGTEKAMEQAEREMK 360

Query: 603 -AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             +     + E+    +    E   ++ +   +E
Sbjct: 361 RQEKNPAEDPEEQEREMQRKKERLEELRRQHERE 394


>gi|60688551|gb|AAH90847.1| Cut-like homeobox 1 [Mus musculus]
          Length = 1426

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 100/286 (34%), Gaps = 22/286 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + E + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 101 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q   ++        ++  ++   +   +          KL +     +   L T +   
Sbjct: 161 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQT--LQTALEKT 218

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +     +E++ + + L   +   E      E + ++L        L 
Sbjct: 219 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 278

Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598
              ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++
Sbjct: 279 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 338

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           E+Q+    +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 339 EQQLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 384


>gi|289706685|ref|ZP_06503033.1| replicative DNA helicase [Micrococcus luteus SK58]
 gi|289556605|gb|EFD49948.1| replicative DNA helicase [Micrococcus luteus SK58]
          Length = 463

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 54/176 (30%), Gaps = 22/176 (12%)

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP- 534
           L  +    E ++L  ++     + +  + L    +     + ++  +   +   +     
Sbjct: 21  LPPQDLEAERSVLGGMMLSKDAIADVVELLRGHDFYRPSHEMIYEAIIDLYGRGEPADAV 80

Query: 535 --EEIH---QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              ++    Q L   G   +L +L + V  A   S   E          ++ +    +  
Sbjct: 81  TVADLLNKRQELSRVGGPAVLHELIQSVPTAANASFYAEIVAEKA--VLRRLVTAGTKIT 138

Query: 590 LL--------SRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            L             E + +I   A+     +  + A ++    +   +I    +Q
Sbjct: 139 QLGYQGDGEVEEIVNEAQSEIYKVAENRQSEDYVRLAEIMEHAVD---EIEAAGNQ 191


>gi|229495814|ref|ZP_04389542.1| putative mobilizable transposon, excision protein [Porphyromonas
          endodontalis ATCC 35406]
 gi|229317388|gb|EEN83293.1| putative mobilizable transposon, excision protein [Porphyromonas
          endodontalis ATCC 35406]
          Length = 281

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 15 IPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
          IPI++ +   +     K       Y A  P+  E+TPSF  + +K  ++ F     GD  
Sbjct: 9  IPIADFLSA-MGIHPTKQKGNALWYSA--PYRTERTPSFKVDTAKNVWFDFGTGKVGDIF 65

Query: 75 S 75
           
Sbjct: 66 D 66


>gi|86609958|ref|YP_478720.1| ATP-dependent chaperone protein ClpB [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558500|gb|ABD03457.1| ATP-dependent chaperone protein ClpB [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 880

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 81/208 (38%), Gaps = 12/208 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++K+I + +   R ++     +     +  +++    + +L     + ++AL+   +   
Sbjct: 321 YRKHIEKDAALERRFQPVYVDQPSVEDTISILRGLKERYELHHGVKISDSALVAAAVLSN 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLD 554
             + E++     I   +    KL   + S     K    +EI +R+ +    EL LK+ D
Sbjct: 381 RYISERFLPDKAIDLVDEAAAKLKMEITS-----KPVELDEIDRRIMQLQMEELSLKKED 435

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQAL-----ALYKRFRLLSRQKEEIEKQIAQVTAKG 609
                  L     E   +  RQ    A         +R + L  +++ ++ QI Q   K 
Sbjct: 436 DAASRDRLSKIEQELANLTERQRELNARWQFEKEAIERLQSLKAERDAVKLQIEQAEQKY 495

Query: 610 EAEKTAIL-ISILHEVHIQIHQIESQEA 636
           +  + A L    L E+  QI + E+  A
Sbjct: 496 DLNRAAELKYGKLMELERQIQEQEAHLA 523


>gi|307566068|ref|ZP_07628526.1| mobilizable transposon, excision family protein [Prevotella amnii
          CRIS 21A-A]
 gi|307345256|gb|EFN90635.1| mobilizable transposon, excision family protein [Prevotella amnii
          CRIS 21A-A]
          Length = 303

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 13/43 (30%)

Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75
               +     P   E+  SF  N     +Y F     G+ + 
Sbjct: 24 KQYGVNLMYLSPLRTERHASFKVNTELNLWYDFGIGKGGNIID 66


>gi|260905016|ref|ZP_05913338.1| primary replicative DNA helicase [Brevibacterium linens BL2]
          Length = 445

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 56/156 (35%), Gaps = 13/156 (8%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +   +    E ++L  ++     + +  + +    +     + ++  +   +   +    
Sbjct: 11  RTPPQDVEAEQSVLGAMLLSKDAIADCVESMTGDDFYKPAHETIYEAVLDLYSRGEPADS 70

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L + G    L ++        L S+   A       GY  A+    R + + R+
Sbjct: 71  VTVANYLTKTGD---LSRVGGAAYLHTLISSVPTA----ANAGYYAAI---VREQAVLRR 120

Query: 595 KEEIEKQIAQV--TAKGEAEK-TAILISILHEVHIQ 627
             E   +I Q+   A+G+ ++      + +++V  +
Sbjct: 121 LVEAGTRIVQMGYDAEGDTDEVVNSAQAEIYQVTER 156


>gi|56477755|ref|YP_159344.1| replicative DNA helicase protein [Aromatoleum aromaticum EbN1]
 gi|56313798|emb|CAI08443.1| replicative DNA helicase protein [Aromatoleum aromaticum EbN1]
          Length = 466

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 51/160 (31%), Gaps = 12/160 (7%)

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
            ++  S       +   KL       E +L+  ++   A  +     + ++ +  ++ ++
Sbjct: 4   SKRRFSDSSSDPQISAIKLPPHSLEAEQSLIGGILLDNAAWERIADLVNEVDFYRDDHRR 63

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           ++  +       K      + + L + G  E    L      A     T  A  +     
Sbjct: 64  IYRHISRLIDLGKPADVVTVFESLEKNGETEQAGGLAYLAEVAN---NTPSAANIRRYAE 120

Query: 578 YQQALALYKRFRLLSRQK---------EEIEKQIAQVTAK 608
             +  A+ ++   +  +          ++ +  + +  AK
Sbjct: 121 IVRERAILRKMVAVGDEIAASALSASGKDAKTLLDEAEAK 160


>gi|319792779|ref|YP_004154419.1| ATP-dependent chaperone clpb [Variovorax paradoxus EPS]
 gi|315595242|gb|ADU36308.1| ATP-dependent chaperone ClpB [Variovorax paradoxus EPS]
          Length = 873

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 72/203 (35%), Gaps = 2/203 (0%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R ++K          +  +++    K ++     + + A++       
Sbjct: 317 YRKYIEKDAALERRFQKIIVGEPSVEATIAILRGLQEKYEVHHGVQITDPAIVAAAELSD 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL-D 554
             + +++     I   +    K+   + S            I  ++          +   
Sbjct: 377 RYITDRFLPDKAIDLIDEAAAKIKIEMDSKPEVMDRLDRRLIQLQIEREAVRREKDEASQ 436

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           ++        A  +  I D  + +Q   A  +    +  + E+++ +I +   KG+  K 
Sbjct: 437 KRFGLIEDEIAKLQKEIADYDEIWQAEKAQAQGSAHIREEIEKLKTEIKEWERKGDFNKL 496

Query: 615 AIL-ISILHEVHIQIHQIESQEA 636
           A L    L  +  ++ + E+ EA
Sbjct: 497 AELQYGQLPALEKRLKEAEASEA 519


>gi|294788992|ref|ZP_06754232.1| replicative DNA helicase [Simonsiella muelleri ATCC 29453]
 gi|294483094|gb|EFG30781.1| replicative DNA helicase [Simonsiella muelleri ATCC 29453]
          Length = 467

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 58/174 (33%), Gaps = 12/174 (6%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
              +            E +++  LI   +        ++D  +  +E + ++  +     
Sbjct: 9   DPEIRALSTPPHSLEAEQSVIGGLILENSAWDRIADVVSDDDFYRHEHRLIFRAIAILIN 68

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E +      + ++L +        +L++    + L +           + Y + +    R
Sbjct: 69  ENRPADVVTVQEQLAQN------DKLEQVGGFSYLVTLVQNTPSAANIRRYAEIV----R 118

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
            R + RQ  E+  QIA+     + +    L+        QI   ES     +GF
Sbjct: 119 ERSIIRQLAEVGTQIARNAYNPQGKTAEQLLDEAENQVFQIA--ESTAKSKQGF 170


>gi|226940649|ref|YP_002795723.1| inner membrane protein [Laribacter hongkongensis HLHK9]
 gi|226715576|gb|ACO74714.1| inner membrane protein [Laribacter hongkongensis HLHK9]
          Length = 595

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 52 SFHCNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
          SF  N + G +  F+     GD +S ++ L G    E+ + LA    +
Sbjct: 49 SFSVNANTGVWQDFATDDKGGDVVSLVAYLQGIGNGEACKLLAERYRM 96


>gi|203454751|ref|YP_002225067.1| gp188 [Mycobacterium phage Myrna]
 gi|197311799|gb|ACH62157.1| gp188 [Mycobacterium phage Myrna]
          Length = 381

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 110/377 (29%), Gaps = 73/377 (19%)

Query: 44  PFH--DEKTPSFHCNDSKGFYYCFS-----CHVKG-DHLSFLSALLGCSFIESVQRLAAI 95
           P H   ++ PS  CN +K  + C+S      +  G D L  +  + G             
Sbjct: 60  PHHANGDQNPSAACNLNKKTWVCYSYVDPETNKSGYDMLHLIMKMEG------------- 106

Query: 96  AGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIE 155
                         KE        ++++   F                   +        
Sbjct: 107 -------------AKEPR-----DVMDLVRGFLE------GGTAEPNQFMAKLSALVVAP 142

Query: 156 MFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRG 215
             +    P  R     +L Q G++   I+E G+ +D  +            I       G
Sbjct: 143 ESEKTGPPVVRGLSERNLAQWGYTHPYIVERGIDLDTASRLQIGYDPDENRITIPHFWNG 202

Query: 216 QVIAFGGRTLS------KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRN 269
           +++ +  R +        G          +  F K + LY    A               
Sbjct: 203 RLVGWQKRAIPNRPGEWPGTVPAVPKYRSSPGFPKSETLYRLAEAR-------------- 248

Query: 270 SSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLR 329
            S  +++VE    V+     GV  V ++ G  +T++QL LL  +   +V   D D     
Sbjct: 249 VSGRVVVVESPFSVIKAEALGVPGVTATFGAKITDHQLDLLKGVDDLVVWMDDDDAGRAA 308

Query: 330 AAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRE 389
                 +L        + V  V    G+D   +      +     I ++ P  D L + +
Sbjct: 309 ERRLVANLYRH-----SGVRVVTPDDGKDLGDYT---SASDILTKIDQATPGYDKLVQYD 360

Query: 390 TENRSFNTPDERAELEI 406
            E   +      +    
Sbjct: 361 REKAEWARRSRVSAPSR 377


>gi|160945798|ref|ZP_02093024.1| hypothetical protein FAEPRAM212_03331 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443529|gb|EDP20534.1| hypothetical protein FAEPRAM212_03331 [Faecalibacterium prausnitzii
           M21/2]
          Length = 173

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
            Y+CF C   GD + F +AL G    ++  +LA   G+   
Sbjct: 6   RYHCFGCGADGDVIDFAAALYGLGKKDAAVQLAQDFGLSYE 46


>gi|118101974|ref|XP_417909.2| PREDICTED: similar to centrosomal protein 164kDa [Gallus gallus]
          Length = 1131

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 92/299 (30%), Gaps = 43/299 (14%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                   +  +E L V     ++   +   E       + + +           I+ +K
Sbjct: 419 QELALQKLREEWESLQVMEKGSMERKKQLALEKMKLEMEEAQQK---------ETIRLKK 469

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  + + +++RL+   +K   E         +  +        +    S L+  K  + 
Sbjct: 470 EKEQFLRELKERLEMEKKKAAEELEKQFATELQQLKSA---AEEKHRKLSELMSEKRHEV 526

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEE 536
               E  +      H  +L     +  +      +  +L+  L    +   ++     + 
Sbjct: 527 EKDHERKMARMKEEHQEVLARIQDQYEEEE--RKQRAELFEGLRGELALLRQRHEVEVKA 584

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKRFRLLSRQK 595
           +   L ER     L  L  +  +       +E  +    +    +++ L  +   L R+K
Sbjct: 585 LQAELDER-----LTALQHRHGEKERRLQDSENELEIRAKNIKARSVQLLSQEESLRRKK 639

Query: 596 EEIEKQIAQVTAKGEA-----------------EKTAILISI---LHEVHIQIHQIESQ 634
           +++  +  +   + +                  +    +  +   L E+  Q  ++E+Q
Sbjct: 640 QQLLDEDRRTERERDEAALASQLRLEENRKEHSDLLESIWQLRKALEELQDQKAELEAQ 698


>gi|332076320|gb|EGI86786.1| DNA primase [Streptococcus pneumoniae GA41301]
          Length = 361

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 28/117 (23%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
           I++    I I ++            N +   +          P HD    SF    +   
Sbjct: 3   IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
           +  FS  ++GD + F+  + G SF E++  L+            +  ++++ +    
Sbjct: 47  FKWFSRDIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAIQEKRERPFYY 97


>gi|229541402|ref|ZP_04430462.1| ATP-dependent chaperone ClpB [Bacillus coagulans 36D1]
 gi|229325822|gb|EEN91497.1| ATP-dependent chaperone ClpB [Bacillus coagulans 36D1]
          Length = 861

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 73/215 (33%), Gaps = 6/215 (2%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI + +   R +++          +  +++    + ++     + + AL+       
Sbjct: 318 YRQYIEKDAALERRFQQVLVQEPDVEDTISILRGLRERFEIHHGVRIHDKALVAAATLSN 377

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +     +   + S   E        +   + E    +   +  +
Sbjct: 378 RYITDRFLPDKAIDLVDEACANIRVEMDSMPTELDEVTRRVMQLEIEEAALQKETDEASK 437

Query: 556 QVRDAGLWSATT-EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                        +     +R  +Q   A  ++ +      E+  + + +   + +  K 
Sbjct: 438 ARLGILQKELANLKEEANRMRAKWQAEKAELQKVQEKRELLEKYRRDLEEAENRYDLNKA 497

Query: 615 AIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           A L    +  V  ++ Q+E Q A  EG    SGR+
Sbjct: 498 AELRHGRIPAVEKELKQLEQQMAEKEG----SGRI 528


>gi|323484977|ref|ZP_08090331.1| TnpY protein [Clostridium symbiosum WAL-14163]
 gi|323401719|gb|EGA94063.1| TnpY protein [Clostridium symbiosum WAL-14163]
          Length = 623

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 15/98 (15%)

Query: 1  MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          MNY +  I      + + + +  Q     +        +       HD    S     +K
Sbjct: 1  MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97
           F +  S    G  + F+    G SF E+VQ L   +G
Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84


>gi|295115236|emb|CBL36083.1| DNA primase (bacterial type) [butyrate-producing bacterium SM4/1]
          Length = 596

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 15/98 (15%)

Query: 1  MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          MNY +  I      + + + +  Q     +        +       HD    S     +K
Sbjct: 1  MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97
           F +  S    G  + F+    G SF E+VQ L   +G
Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84


>gi|291562190|emb|CBL41006.1| DNA primase (bacterial type) [butyrate-producing bacterium SS3/4]
          Length = 623

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 15/98 (15%)

Query: 1  MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          MNY +  I      + + + +  Q     +        +       HD    S     +K
Sbjct: 1  MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97
           F +  S    G  + F+    G SF E+VQ L   +G
Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84


>gi|291549011|emb|CBL25273.1| hypothetical protein RTO_05210 [Ruminococcus torques L2-14]
          Length = 623

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 15/98 (15%)

Query: 1  MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          MNY +  I      + + + +  Q     +        +       HD    S     +K
Sbjct: 1  MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97
           F +  S    G  + F+    G SF E+VQ L   +G
Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84


>gi|291545588|emb|CBL18696.1| DNA primase (bacterial type) [Ruminococcus sp. SR1/5]
          Length = 623

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 15/98 (15%)

Query: 1  MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          MNY +  I      + + + +  Q     +        +       HD    S     +K
Sbjct: 1  MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97
           F +  S    G  + F+    G SF E+VQ L   +G
Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84


>gi|291535039|emb|CBL08151.1| DNA primase (bacterial type) [Roseburia intestinalis M50/1]
          Length = 623

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 15/98 (15%)

Query: 1  MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          MNY +  I      + + + +  Q     +        +       HD    S     +K
Sbjct: 1  MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97
           F +  S    G  + F+    G SF E+VQ L   +G
Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84


>gi|33323572|gb|AAQ07542.1|AF503408_66 Ban [Enterobacteria phage P7]
          Length = 454

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 10/136 (7%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L  L+       E    +    +  +  ++++S +       K      + + L 
Sbjct: 15  AEQAILGGLMLDNCRWDEVADRIVADDFYTSAHREIFSEMERLLSHGKPIDLITLAEALE 74

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           + G      +L+R    A L   +           Y   +    R R + R+   +  +I
Sbjct: 75  QNG------KLERAGGFAYLAEMSKNTPSAANICAYADIV----RERAVVREMISVANEI 124

Query: 603 AQVTAKGEAEKTAILI 618
           A+     +   +  L+
Sbjct: 125 AEAGYAQDGRGSNELL 140


>gi|218262155|ref|ZP_03476714.1| hypothetical protein PRABACTJOHN_02387 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223561|gb|EEC96211.1| hypothetical protein PRABACTJOHN_02387 [Parabacteroides johnsonii
           DSM 18315]
          Length = 326

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 82/254 (32%), Gaps = 13/254 (5%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA-------I 95
            P  ++ TPSF  + +   +  +     G  +  +     C+   ++ RL          
Sbjct: 34  SPLREDNTPSFKVDYNANLWCDYGTGEGGTLIDLVMKQHQCNAYGAICRLEQGNTASFSF 93

Query: 96  AGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIE 155
            G  LP  D K +    I+   I+ ++      +   +         Y+ E         
Sbjct: 94  HGKDLPERDTKRQAASPIEIRRIQPLQNPALMRYLQERGISPGTAAPYVQEMYYRIGGKP 153

Query: 156 MFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF-PIRSSR 214
            F L +  DS      + R KG + + I       +  ++   ++ F + L F  IR  +
Sbjct: 154 YFALAFRNDSGGYELRNPRFKGSTSKDITHIRQQGEPRDTCFVFEGFLDFLSFLTIRQQK 213

Query: 215 GQVIAFG----GRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS 270
              +          L+   +      P     H    L N   A     ++IR++ +   
Sbjct: 214 SPDMPCTDWQDYVILNSTANTDKALYPLAGYGHIHCMLDN-DEAGRKAVEAIRQEYKWRV 272

Query: 271 SSFIILVEGYMDVL 284
                L  G+ D+ 
Sbjct: 273 RDASYLYSGHNDLN 286


>gi|92115928|ref|YP_575657.1| hypothetical protein Nham_0301 [Nitrobacter hamburgensis X14]
 gi|91798822|gb|ABE61197.1| hypothetical protein Nham_0301 [Nitrobacter hamburgensis X14]
          Length = 216

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 20/101 (19%)

Query: 7  FIK--DLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHD-EKTPSFHCNDSKGFY 62
          F+   ++   + I +      V W               CP H  E+  S     +KG +
Sbjct: 3  FVDFAEIRERLSIEDAAEMLPVKWKSEGQQLRAD-----CPVHGGER--SLIITPAKGLF 55

Query: 63 YCFSC---HVKGDHLSF---LSALLGCSFIESVQRLAAIAG 97
           C +       GD ++    +         E+ Q LA   G
Sbjct: 56 VCKATTDAKKGGDCIALCAHVMQTTNF---EAGQYLAQQIG 93


>gi|322435638|ref|YP_004217850.1| hypothetical protein AciX9_2025 [Acidobacterium sp. MP5ACTX9]
 gi|321163365|gb|ADW69070.1| hypothetical protein AciX9_2025 [Acidobacterium sp. MP5ACTX9]
          Length = 407

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 43  CPFHDEKTPSFHCN-DSKGFYYCFSCHVKGDHLSFLS-----ALLGCSFIESVQRL 92
           CP H++  PS   + +  G + C +C   G  ++F            S  +++ RL
Sbjct: 151 CPVHNDSRPSLTVDLNDHGTWKCHACDRGGKLIAFEQWVAKSKGEDLSTKDALPRL 206


>gi|37528187|ref|NP_931532.1| replicative DNA helicase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787624|emb|CAE16731.1| replicative DNA helicase [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 469

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 47/165 (28%), Gaps = 10/165 (6%)

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
           A  +             +   KL       E ++L  L+          + +    + + 
Sbjct: 2   AGKKSTHNKMAEPKDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVTSNDFFSR 61

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
             +++++ +              + + L + G      +L+     A L   +       
Sbjct: 62  PHRRIFAEMQRLLEMGNPIDLITLSESLEQSG------ELNNVGGFAYLAELSKNTPSAA 115

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
               Y   +    R R + R+   +  +IA      +   +  L+
Sbjct: 116 NINAYADIV----RERAVVREMIAVANEIADAGYDPQGRSSEELL 156


>gi|332828409|gb|EGK01118.1| chaperone ClpB [Dysgonomonas gadei ATCC BAA-286]
          Length = 863

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 74/212 (34%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++        +  +  +++    K +   K  +++ A++  +    
Sbjct: 318 YQKYFEKDKALERRFQTVMVDEPSEADAISILRGLKEKYENHHKVRIKDEAIIAAVQLSS 377

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E            +          +L  
Sbjct: 378 RYISDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEKSRRIKQLEIEREAIRRENDKLKE 437

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           Q     +     E    D++  +Q    +  + +    + E  + +  +   +G+  K A
Sbjct: 438 QELSKEISRLKDEE--KDLKAKWQSEREVINKIQQNKIEIENTKFEAEKAEREGDYGKVA 495

Query: 616 IL----ISILHE----VHIQIHQIESQEAMIE 639
            L    +  L +    +  Q+H+++  +AMI+
Sbjct: 496 ELRYGKLKELEDGIGKLQGQLHEMQGNQAMIK 527


>gi|160942807|ref|ZP_02090047.1| hypothetical protein FAEPRAM212_00284 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445859|gb|EDP22862.1| hypothetical protein FAEPRAM212_00284 [Faecalibacterium prausnitzii
           M21/2]
          Length = 173

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
            Y+CF C   GD + F +AL G    E+  +LA   G+   
Sbjct: 6   RYHCFGCGADGDVIDFAAALYGLRKKEAAVQLAQDFGLSYE 46


>gi|302385521|ref|YP_003821343.1| hypothetical protein Closa_1104 [Clostridium saccharolyticum WM1]
 gi|302196149|gb|ADL03720.1| hypothetical protein Closa_1104 [Clostridium saccharolyticum WM1]
          Length = 595

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 63/450 (14%), Positives = 131/450 (29%), Gaps = 61/450 (13%)

Query: 2   NYPRDF---IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
           +YP+DF   I      + +  L+  ++   RR+ N+V  D    CPF +++    + N  
Sbjct: 3   SYPQDFPFGI------MDVVELL--HLHIRRRQANSVYVD----CPFCNDRRGKMNVNYV 50

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA------------------------ 94
           K  + C  C   G  L+  +++   +  ++ + +                          
Sbjct: 51  KNVWRCNYCGEHGGMLALYASVNNTTNSDAYREICDILQTDPPWGYEAEKKYFGCAGASN 110

Query: 95  ---IAGVPLPVVDPK------IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145
                G   P    +       E  +  +     + +  +      L      R H    
Sbjct: 111 GEPRIGSSYPDRAQETSAEVLEEVPQSKRASDQEIHQTYSLLL-EMLSLTDRHRRHLRSP 169

Query: 146 ERGIDSHAIEMFKLGYAPDSR--YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR 203
           +RG+    I+       P      SL E L  KG +  + +     ++  N +  +++  
Sbjct: 170 KRGLTDEQIDSLGYKSTPPVFLCRSLTERLTAKGCT-VQGVPGFYQLEDGNWSVKFNKRT 228

Query: 204 NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIR 263
             ++ P +   G +       +     ++  N P   +  K     +    +     S  
Sbjct: 229 AGILIPAKGLDGLIHGIQ---ILLDVPLRNENDPPDKVGAKYIWFSSSTKYMGTTSGSPV 285

Query: 264 KDVRRNSSSFIILVEGYM--DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR--IVL 319
             V    +  + + EG +  D+  L        ++          L  L   +    IV 
Sbjct: 286 HFVGNPFARTVYVTEGLLKADIAHLLMNRSFVAIAGANNVSRLDLLFTLLAQNGTELIVE 345

Query: 320 CFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFV-LLSRGEDPDSFIRCYGKTAFEKLIVE 377
             D D     A  +    + L     G     +      +  D +     +   +K    
Sbjct: 346 AHDMDKYSNEAISQGASKIYLMARKHGMDCRRLTWNPNYKGVDDWQLALRRKEIQKKEEA 405

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIH 407
           S+           E    N   E  +    
Sbjct: 406 SMNFKARYLSGLCEMDDINRSVETWQRNQE 435


>gi|303246078|ref|ZP_07332359.1| hypothetical protein DesfrDRAFT_0834 [Desulfovibrio fructosovorans
           JJ]
 gi|302492474|gb|EFL52345.1| hypothetical protein DesfrDRAFT_0834 [Desulfovibrio fructosovorans
           JJ]
          Length = 231

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 68/223 (30%), Gaps = 20/223 (8%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK--GFY 62
           ++ I  +     + + +      D        G+Y   CP       SF   +    G  
Sbjct: 7   KNLIDKINSKYSLIDYLSD---LD-TGIKNKSGNYT--CPLCGHD--SFSVFEDTTVGLC 58

Query: 63  YCFS----CHVKGDHLS-FLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117
           +C S    C  KGD  S +L+      F ++++  ++   +   + + ++ K  K Q D 
Sbjct: 59  HCKSGSCTCSFKGDIFSLYLAKNPKKKFTDAIKYFSSKVNID-YIEELELTKNLKWQLDY 117

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +        F+  +L  +   +    ++    D              +  S       K 
Sbjct: 118 LAKCRQYLAFY--NLNASDIMKNFTSINCENEDFAVNSKRFYSVLKGNIESYSMMY--KV 173

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220
            +  +       ++        + + N  +      R  + A 
Sbjct: 174 VTILRTEITDEKLERYEKDRIRNDYHNDQVNQYYKERNTINAI 216


>gi|218129446|ref|ZP_03458250.1| hypothetical protein BACEGG_01023 [Bacteroides eggerthii DSM
          20697]
 gi|255008149|ref|ZP_05280275.1| DNA primase [Bacteroides fragilis 3_1_12]
 gi|313145868|ref|ZP_07808061.1| DNA primase [Bacteroides fragilis 3_1_12]
 gi|217988176|gb|EEC54499.1| hypothetical protein BACEGG_01023 [Bacteroides eggerthii DSM
          20697]
 gi|313134635|gb|EFR51995.1| DNA primase [Bacteroides fragilis 3_1_12]
          Length = 295

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 35 VKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
              YW   P  +E+TPSF  ND    +Y F     GD +
Sbjct: 26 TSKQYWYLSPLRNERTPSFKVNDRLNEWYDFGAATGGDLV 65


>gi|126314484|ref|XP_001378627.1| PREDICTED: similar to Homeobox protein cut-like 1 (CCAAT
           displacement protein) (CDP) [Monodelphis domestica]
          Length = 1696

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 102/286 (35%), Gaps = 22/286 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 313 DPVPALDLGQQLQLKVQRMHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 372

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q    +        ++  ++   +   +          KL +     +   L T +   
Sbjct: 373 EQTLKNQAENIALEKEQKLQNDFAEKERKLQETQMSTASKLEEAEQKVQT--LQTALEKT 430

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +     +E++ + + L   +   E      E + ++L        L 
Sbjct: 431 RTELFDLKSKYDEETAAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANKSLQLA 490

Query: 552 -------QLDRQV-----RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598
                   +++ +         +  A  E  I  + +  Q+  A   + R  S  Q  ++
Sbjct: 491 TQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 550

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           E+Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 551 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 596


>gi|220927541|ref|YP_002504450.1| replicative DNA helicase [Clostridium cellulolyticum H10]
 gi|219997869|gb|ACL74470.1| replicative DNA helicase [Clostridium cellulolyticum H10]
          Length = 446

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 10/161 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           G++  +    E ++L +++    ++    + L    +   + ++++  +   F   +   
Sbjct: 7   GRIPPQSLEAEQSVLGSMLIDKEVVPVVMEVLKSEDFYRPDHKEIYDVIIELFDRAQPID 66

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + +RL   G  EL+  L+       L +  TE       + Y + +      + L R
Sbjct: 67  LITVSERLKLHGKLELVGGLE------YLTNIATEVPTTANVKHYAKIVE----EKALLR 116

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +  +    I  +      E T IL      +   + +  SQ
Sbjct: 117 KLIKASSDIVDLGYNASEEVTYILDRAEQNIFDILQKRSSQ 157


>gi|187478914|ref|YP_786938.1| ATP-dependent protease ATPase subunit [Bordetella avium 197N]
 gi|115423500|emb|CAJ50034.1| ATP-dependent protease, ATPase subunit (chaperone) [Bordetella
           avium 197N]
          Length = 867

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 55/158 (34%), Gaps = 3/158 (1%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELL 550
           ++H  I      +   I   +    ++   + S            I  ++       E  
Sbjct: 375 LSHRYITDRFLPD-KAIDLIDEAASRIRMEIDSKPEVMDKLDRRIIQLKIEREAVKKETD 433

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
               R++          +    D  + ++   A  +  + +  + + +  ++A++  KG+
Sbjct: 434 DASLRRLAAIEEELERLQREYNDYEEVWKAEKAAVQGAQSIKEEIDRVRAEMAELQRKGQ 493

Query: 611 AEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
            +K A L    L E+  ++   +  E+ IE     SG+
Sbjct: 494 FDKLAELQYGKLPELEARLKAADMAESDIERAEAKSGK 531


>gi|307565705|ref|ZP_07628174.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307345531|gb|EFN90899.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 289

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
           P  +E  PSF  +  K  +  ++    G  +     L GC+  E++ RL   A
Sbjct: 4  SPLREETHPSFKVDTEKNLWIDYAEGRGGSIIDLCIRLEGCTLSEAICRLGQNA 57


>gi|239918774|ref|YP_002958332.1| primary replicative DNA helicase [Micrococcus luteus NCTC 2665]
 gi|281415000|ref|ZP_06246742.1| replicative DNA helicase [Micrococcus luteus NCTC 2665]
 gi|239839981|gb|ACS31778.1| primary replicative DNA helicase [Micrococcus luteus NCTC 2665]
          Length = 462

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 54/176 (30%), Gaps = 22/176 (12%)

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP- 534
           L  +    E ++L  ++     + +  + L    +     + ++  +   +   +     
Sbjct: 21  LPPQDLEAERSVLGGMMLSKDAIADVVELLRGHDFYRPSHEMIYEAIIDLYGRGEPADAV 80

Query: 535 --EEIH---QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              ++    Q L   G   +L +L + V  A   S   E          ++ +    +  
Sbjct: 81  TVADLLNKRQELSRVGGPAVLHELIQSVPTAANASFYAEIVAEKA--VLRRLVTAGTKIT 138

Query: 590 LL--------SRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            L             E + +I   A+     +  + A ++    +   +I    +Q
Sbjct: 139 QLGYQGDGEVEEIVNEAQSEIYKVAENRQSEDYVRLAEIMEHAVD---EIEAAGNQ 191


>gi|57234331|ref|YP_181612.1| DNA primase domain-containing protein [Dehalococcoides
          ethenogenes 195]
 gi|57234919|ref|YP_181024.1| DNA primase domain-containing protein [Dehalococcoides
          ethenogenes 195]
 gi|57234958|ref|YP_181001.1| DNA primase domain-containing protein [Dehalococcoides
          ethenogenes 195]
 gi|57224779|gb|AAW39836.1| DNA primase domain protein [Dehalococcoides ethenogenes 195]
 gi|57225367|gb|AAW40424.1| DNA primase domain protein [Dehalococcoides ethenogenes 195]
 gi|57225406|gb|AAW40463.1| DNA primase domain protein [Dehalococcoides ethenogenes 195]
          Length = 868

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 17/64 (26%)

Query: 7  FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG--FYYC 64
           I D+L  +              +        + ACCP H +K PS    +  G     C
Sbjct: 9  TIDDILAKL--------------QGVKKNGSGWMACCPAHADKNPSLSVCEKSGKILIKC 54

Query: 65 F-SC 67
          F  C
Sbjct: 55 FAGC 58


>gi|333027429|ref|ZP_08455493.1| putative DnaB domain protein helicase domain protein [Streptomyces
           sp. Tu6071]
 gi|332747281|gb|EGJ77722.1| putative DnaB domain protein helicase domain protein [Streptomyces
           sp. Tu6071]
          Length = 550

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 13/148 (8%)

Query: 476 LSKKPSLREAALLLTLIN--HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                   E ALL   I+  H     E    +    +       LW  L     +Q+   
Sbjct: 68  PPPGDPASERALLAACIHDKHHREYDEAAAIITRDDFTVPAYAVLWDVLGDQIRDQRPTD 127

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P+ +   L  RG      +L       G      +A      + + +A+    R R L  
Sbjct: 128 PDTLRVELDRRG------ELRPFGPGGGHLHEIADAYSGGSAEYFAEAIRRTSRLRDLD- 180

Query: 594 QKEEIEKQIAQVTAKG-EAEKTAILISI 620
              ++  +I      G + E+   LI+ 
Sbjct: 181 ---DLTTRIKAGIHTGRDLEELEGLITR 205


>gi|307595308|ref|YP_003901625.1| SMC domain-containing protein [Vulcanisaeta distributa DSM 14429]
 gi|307550509|gb|ADN50574.1| SMC domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 826

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 84/253 (33%), Gaps = 32/253 (12%)

Query: 405 EIHLKNCINHIKDQKLRY-YYSQAIRDRLQQLFQKYITEHSG-YGRYWKKNARHRDQKGP 462
                  +  +KD+ +    Y   +R+ L+   +           R  ++ +R R+ +  
Sbjct: 330 IYKAFEELAKLKDKLVEDREYLSNVRNDLEIQSESLKASLRELEARLSQEESRVREYRAL 389

Query: 463 SQRLMQSSLVKGKLSKKPSLRE--------AALLLTLINHPAILQEQYQE--LADIRYDN 512
             +  +   V+  + +  S  E           LL ++ +  IL    +   + +     
Sbjct: 390 VSKYGEPIKVRKDIEELRSRLEKLSSEESFRISLLNVLQY--ILSNHEERCPVCNRPLSE 447

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            + + +   +  +  + +    EEI  +L E      L+++   +          EA + 
Sbjct: 448 EDYENIKRRI-EELSKGRNDEIEEIRNKLNE------LEKVLTNMETLLPIVNDYEATVE 500

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-----------ILISIL 621
             R    +  A+  +   + R   +I+++I  +T   +  +                  L
Sbjct: 501 RARDVRSRFEAVVSKLETIERSIRDIDRRIQALTRFVDEFRAEIDDIDRAISYLRKYREL 560

Query: 622 HEVHIQIHQIESQ 634
           + +  Q  ++  Q
Sbjct: 561 NSLKQQEEELRQQ 573



 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 68/240 (28%), Gaps = 27/240 (11%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                 +R RL  + +              +      ++   +   +   +    +    
Sbjct: 181 EELINRLRQRLASVKELPEIIVKYGSIEKAREKVRELREEIDKLRKEEEELSNTYNDLLK 240

Query: 482 LREAAL-------------LLTLINHPAILQEQYQELADIRYDNN----ELQKLWSFLFS 524
            RE  L             +   I     L+++ + +     +       L++L   L  
Sbjct: 241 RREEILKNFKGVEEVYSNYIAIRIRR-ENLEQELERVGVKEVNETSIRLRLERLRDSLIE 299

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
              E       +   +L       L +  +   +     +   +  + D          L
Sbjct: 300 KLEEYALVKEADEVSKLVITN-DNLAEAAENIYKAFEELAKLKDKLVEDREYLSNVRNDL 358

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAK--------GEAEKTAILISILHEVHIQIHQIESQEA 636
             +   L     E+E +++Q  ++         +  +   +   + E+  ++ ++ S+E+
Sbjct: 359 EIQSESLKASLRELEARLSQEESRVREYRALVSKYGEPIKVRKDIEELRSRLEKLSSEES 418


>gi|290476882|ref|YP_003469793.1| replicative DNA helicase; chromosome replication; chain elongation
           [Xenorhabdus bovienii SS-2004]
 gi|289176226|emb|CBJ83031.1| replicative DNA helicase; chromosome replication; chain elongation
           [Xenorhabdus bovienii SS-2004]
          Length = 459

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/133 (9%), Positives = 42/133 (31%), Gaps = 3/133 (2%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                +   KL       E ++L  L+          + ++   + +   +++++ +   
Sbjct: 4   PKDRQVEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVSSNDFFSRPHRRIFAEMQRL 63

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
               +      + + L + G    L  +      A L   T  A  ++      +  A+ 
Sbjct: 64  LERGQPIDLITLSESLEQNG---ELDSVGGFAYLAELSKNTPSAANINAYADIVRERAVV 120

Query: 586 KRFRLLSRQKEEI 598
           +    ++ +  + 
Sbjct: 121 RDMIAVAHEIADA 133


>gi|146297060|ref|YP_001180831.1| ATPase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410636|gb|ABP67640.1| ATPase AAA-2 domain protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 864

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 72/205 (35%), Gaps = 10/205 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI + +   R ++    +      +  +++    + ++     + + AL+       
Sbjct: 321 YRRYIEKDAALERRFQPVLVNPPSVEDTISILRGLKERFEIHHGVRITDDALIAAAKLSD 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +     L + + S   E      + +  R+       +L++ + 
Sbjct: 381 RYITDRFLPDKAIDLIDEAAALLRTEIDSMPTELDEITRKIMQLRIE----KNVLQKEEN 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQAL-----ALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                 L     E   ++ R     A       L K  R +  + E+++ +I +     +
Sbjct: 437 PSTKQRLEEIDKEIAELNDRANQLSAQWEYEKELIKEVRKIKEEIEDVKIKIEEAERNYD 496

Query: 611 AEKTAIL-ISILHEVHIQIHQIESQ 634
             K + L    L E+  ++ Q   +
Sbjct: 497 LNKLSELKYGRLLELQKRLEQKRQE 521


>gi|325115846|emb|CBZ51401.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 1244

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 78/228 (34%), Gaps = 12/228 (5%)

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +    D+ L+ + +Q +     Q+F     E +          + +            + 
Sbjct: 668 MRKSSDETLKLHLAQQLAS--FQIFSAQKVETTAMLEKQCALLQDQLSSLSHLFEASQAE 725

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
           +   L +     +  L  TL  H A  +E  + L + + +  E             E+  
Sbjct: 726 MARHLEETKEKHQETLEKTLAVHQAEAEEVLKRLGEEQREIEERHSSEKEELKHKAEKAE 785

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              E +      R     LK+L R   +             +V    +Q         LL
Sbjct: 786 Q--ELLLTTGRNRTLEAELKELQRLYEEVRSQVGRAVGRCGEVEDREKQEREGR---CLL 840

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++ EE+++++ ++      E+     ++L E    + +++SQ+A ++
Sbjct: 841 EQRTEELKEELTRLR-----ERDTSHSALLKERETLLAELQSQKAALQ 883


>gi|313900381|ref|ZP_07833875.1| replicative DNA helicase [Clostridium sp. HGF2]
 gi|312954930|gb|EFR36604.1| replicative DNA helicase [Clostridium sp. HGF2]
          Length = 448

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 13/145 (8%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWSFLFSDFVEQKYF 532
            +     +  E ++L  ++ +P++    Y + L    +  +  Q+++S +       K  
Sbjct: 2   SRELPHSTEAEQSILGAMMIYPSVTSVVYDQGLDVRDFYLDIHQRIFSAMMDITDSGKPV 61

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               +  RL +      ++QL   V  A      ++  I      Y        + R   
Sbjct: 62  DVTTLIARLQD------IEQL-NLVGGADYIIKLSDTAISSANSVY---YIEMIKSRAHL 111

Query: 593 RQKEEIEKQIAQV--TAKGEAEKTA 615
           R+  E  +QIA+       + ++  
Sbjct: 112 RRLIEAAEQIAEDGFDTANDLDEIM 136


>gi|257793091|ref|YP_003186489.1| ParB domain protein nuclease [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479783|gb|ACV60100.1| ParB domain protein nuclease [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 457

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 70/212 (33%), Gaps = 19/212 (8%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL-- 487
           +R  +                    RH + +  SQ       V   + +  +  +  L  
Sbjct: 104 ERRGEDNDPMRKARRAKFLKEYWGIRHGNNQRTSQIEKSYRDVAQAIGESVATTQRLLKL 163

Query: 488 ------LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                 L  L++   +     ++LA         + L+  L  +   + +   +E+ +RL
Sbjct: 164 NDLIPELQALVSSGKLGTSAAEQLA--YLSPEIQRSLYEALGEEIANRTFAETKELRRRL 221

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            E    +         R     +   E    + RQ  +Q     +  +  S +   +E++
Sbjct: 222 EEAELRD-----QETARLQAELAELREQGREEDRQKIEQLERRIRDLQAQSWRVVTLEQE 276

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++ +  +G  E        + E+  +I ++++
Sbjct: 277 LSALRERGRKEDRE----RIAELEREIEELKN 304


>gi|330917663|ref|XP_003297906.1| hypothetical protein PTT_08462 [Pyrenophora teres f. teres 0-1]
 gi|311329207|gb|EFQ94037.1| hypothetical protein PTT_08462 [Pyrenophora teres f. teres 0-1]
          Length = 2507

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 87/260 (33%), Gaps = 30/260 (11%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL---RYYYSQAIRDRLQQLFQKYI 440
             + +R  +       +    L   +K  +   +       R    Q + +++QQ   + +
Sbjct: 900  RIIQRNFQVYLDLQSNPWWRLFARMKPMLGATRQAAEVKKRDEMIQQLEEKMQQ---EAV 956

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAI 497
                      +     +  +   +     +L K ++ K+  LREA L   L   I     
Sbjct: 957  ERQRVEDERRRAEMDIQRIQKTLESERALALDKEEIFKRLQLREAELSEKLAGAIEDQDQ 1016

Query: 498  LQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLD 554
            L++Q   L    +    E + L   L             +I  +L        +  ++LD
Sbjct: 1017 LEDQLDALMEAKKKTEEEAEHLRRELEQA---------GQIISKLEGETQELEQQARRLD 1067

Query: 555  RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-SRQKEEIEKQIAQVTAKGEAEK 613
             Q+++  +  +          +   Q + +      L  R+ +++E ++     K + + 
Sbjct: 1068 EQLKELEVIRSQ----RSQAEEKLSQEIKMLTSHLALKERKLQDLEAKL----LKTDQDL 1119

Query: 614  TAILISILHEVHIQIHQIES 633
               L + + EV     QI+ 
Sbjct: 1120 DIKLAASVKEVQASKKQIKE 1139



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 82/280 (29%), Gaps = 17/280 (6%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
              +K +   L         + E+   +    R + +  L +    I  ++      +   
Sbjct: 1997 QAKKRLQNELEDYRSQHAHDVEDSETSLEQTRKKYQSELASLTQEIDQERENVILVREEN 2056

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             RL++  ++   +          +   +++      L   S  + + +   +  ++ ++ 
Sbjct: 2057 GRLREEIEELRNKWDDEL--LNSSTWAKEKSRLEMTLQTISNSRDEAANAHNEAQSKIVS 2114

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
             L     +        A+      E ++L S L             E         +   
Sbjct: 2115 LLSQVRTLRTNVDDLAAERDSAIEEKKRLESRLQEAADALDDLSRSESPAMRNAAAYDRD 2174

Query: 550  LKQL-----------DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            L +L              V       A  +    D+    +  + L+K    + +  +++
Sbjct: 2175 LLELKSGLAQQEDITAAAVGKMRRAEALAQELQKDIVAEREANVKLHKDKAAVEKALKDL 2234

Query: 599  EKQIAQVTAKGEAEKTAI----LISILHEVHIQIHQIESQ 634
            + ++  +  KG +         L   + E+   +   ES 
Sbjct: 2235 QLRLVDLETKGYSGSAGKDVRFLNGRIQELEKALENSEST 2274


>gi|312958300|ref|ZP_07772821.1| hypothetical protein PFWH6_0197 [Pseudomonas fluorescens WH6]
 gi|311287364|gb|EFQ65924.1| hypothetical protein PFWH6_0197 [Pseudomonas fluorescens WH6]
          Length = 962

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 31  KTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIES 88
           K      +Y A  P   +K   S   N SKG +  F+     GD +  +  + G + +++
Sbjct: 37  KRVDGGKEYTAPNPTRTDKRAGSLKVNLSKGTWADFATGDKGGDLIDLVRYIEGGTDVKA 96

Query: 89  VQRLAAIAGV 98
            ++LA +  V
Sbjct: 97  CKKLADLLSV 106


>gi|257470270|ref|ZP_05634361.1| replicative DNA helicase [Fusobacterium ulcerans ATCC 49185]
 gi|317064481|ref|ZP_07928966.1| replicative DNA helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313690157|gb|EFS26992.1| replicative DNA helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 437

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 52/164 (31%), Gaps = 12/164 (7%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           + K     +  E A++  +      L +  + L+   + N +L+ +++ +   + E K  
Sbjct: 5   EIKKIPYNTEAEKAVIGGIFLKQNALTDIAEFLSPDDFYNKDLKIIYAAILELYNENKAI 64

Query: 533 LPEEIHQR---LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-- 587
            P  I ++   +    F E+++ +              +   +   Q     +       
Sbjct: 65  DPILILEKNKNIKNDTFYEVIESVQTAANVIEYAHIVMDKAKLRNLQDSATKIVEMTSDE 124

Query: 588 ---FRLLSRQKEEIEKQIAQVTAKGE----AEKTAILISILHEV 624
                 +  + E +  +IA+           +      + L  V
Sbjct: 125 EETTEDIIDRSEALIFKIAENNNTRNVISIKDMMNSEFTRLQNV 168


>gi|170052018|ref|XP_001862031.1| PFTAIRE-interacting factor 1A [Culex quinquefasciatus]
 gi|167872987|gb|EDS36370.1| PFTAIRE-interacting factor 1A [Culex quinquefasciatus]
          Length = 859

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/300 (14%), Positives = 92/300 (30%), Gaps = 24/300 (8%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +  +   + A  K    ++  +        E+ + +      EL    K    +I +  
Sbjct: 477 YNSWQLQEQMAATKRQFNAINYIPPEHIEYYESANGDLQMRLNELMTREKELTQNIAE-- 534

Query: 420 LRYYYSQAI--RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           L   Y++ +   D L    +K   +        + N + +  +   +RL + S    +  
Sbjct: 535 LNRAYNETLENADNLWAQMEKEYKDKISKCETVETNLKSKISQL-EERLSKDSEYAHERI 593

Query: 478 KKPSLREAALL----LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                 E +L          +  ++ +    L +      E +KL ++L     E     
Sbjct: 594 SHLEEAENSLKNRVSKLNKENKELIAKHATLLEEYSTLKEEYRKLQNYLRGPAAENLEKE 653

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR---- 589
             +I           L ++L    R       +  + +  +R     A            
Sbjct: 654 KRKIL---------TLEEELSHSTRQLKEVEDSHRSELGHLRGQLMCASKELNHIEVTNS 704

Query: 590 LLSRQKEEIEKQIAQVT--AKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
            L  + E +E +I ++      + E+   L   L     QI  ++   +   G G   GR
Sbjct: 705 ELREEVETLEGRIRELLTLRNADDERIKHLAEELQAKQAQIQHMQHSGSTKVGGGAGYGR 764


>gi|302390762|ref|YP_003826583.1| primary replicative DNA helicase [Thermosediminibacter oceani DSM
           16646]
 gi|302201390|gb|ADL08960.1| primary replicative DNA helicase [Thermosediminibacter oceani DSM
           16646]
          Length = 451

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 59/183 (32%), Gaps = 12/183 (6%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +L+  K+       E ++L +++     +    + L    +     ++++  +      +
Sbjct: 2   NLMPPKVPPHNMEAEQSVLGSMLLSREAIYVALERLKSEDFYIEAHRRIFDIIAELHENR 61

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN----IVDVRQGYQQALALY 585
                  + + L  R   E +  +        +            IV+ +   ++ +   
Sbjct: 62  DPVDLITVTEALRSRKMLEEVGGVTYLTNLTEVVPTPANIAQYCKIVEEKALLRRLIETA 121

Query: 586 KRFRLL--------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            +   L            +E E++I  +  K   +    +  +L     +I Q+ + +  
Sbjct: 122 SKILSLAYEPKDDVEELLDEAERRIFGIVQKRRVDNFHHIKDVLLATFERIEQLYNSKGG 181

Query: 638 IEG 640
           I G
Sbjct: 182 ITG 184


>gi|172041661|ref|YP_001801375.1| replicative DNA helicase [Corynebacterium urealyticum DSM 7109]
 gi|171852965|emb|CAQ05941.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 506

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 59/184 (32%), Gaps = 20/184 (10%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           G+   +    E  +L  ++ +   + E  + L    +     Q ++  +   + E K   
Sbjct: 67  GREMPQNVAAEQGVLGGMLMNKDAISEVVEVLVMDDFYRPAHQTIFDVIVRLYGEGKEVD 126

Query: 534 PEEIHQR------LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           P  +  R      L + G    L+ +  +   +                  ++ +    R
Sbjct: 127 PVIVAGRLDRDGKLEQIGGAPYLQSIMSKTPTSANVGYYANLVKEKA--TLRRLVTAGTR 184

Query: 588 FRLL----------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI-QIHQIESQEA 636
              L              +  ++++  +T    +E    +   L +  + +I ++ESQ  
Sbjct: 185 IVQLGYSGIEGAEVESVVDNAQQEMFALTNSATSEDY-EVFERLLDPTLDEIDELESQGG 243

Query: 637 MIEG 640
             +G
Sbjct: 244 TAKG 247


>gi|327286849|ref|XP_003228142.1| PREDICTED: dynactin subunit 1-like [Anolis carolinensis]
          Length = 1255

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 93/287 (32%), Gaps = 10/287 (3%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +             L  E         ++E ++          +LEI          D  
Sbjct: 276 EEMADTADAIEMATLDKEMAEERAESLQQEVDSLKEKVEYLTMDLEILKHEIEEKGSDGA 335

Query: 420 LRYYYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              Y+ + + ++  +L +  +           +     +  +  +  L      K KL +
Sbjct: 336 ASSYHVKQLEEQNARLKEALVRMRDLSASEKQEHVKLQKHMEKKNTELESLRQQKEKLQE 395

Query: 479 KPSLREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPE 535
           +    E  +        A L  +E  + L +   D  E +++L   +       +     
Sbjct: 396 ELKQAERTVDELKEQVDAALGAEEMVETLTERNLDLEEKVRELRETVGDLEAMNEMNDEL 455

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           + + R  E    E L     +VR+A       +  + D +Q  ++   L    + ++R+ 
Sbjct: 456 QENARETELELREQLDMATARVREAEKRVEAAQETVADYQQTIKKYRELTAHLQDVNREL 515

Query: 596 EEIEKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA 636
              ++  A+   +   E      K A   +    + +++ Q+E Q+A
Sbjct: 516 MSQQEASAEKQQQPPPEMFDFKIKFAETKAHAKAIEMELRQMEVQQA 562


>gi|325187875|emb|CCA22419.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 1249

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 95/280 (33%), Gaps = 13/280 (4%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              ++ Y     ++L+ +   +     ++  EN          E           + D   
Sbjct: 878  DELKQYLLDEHDRLVQKQARIEAEHKQKLLENEKNRIKVLEEEWAKKEVERNTIVHD--T 935

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            +  Y + +  +L+    +   +   +     ++ R    +     L++  L   + + + 
Sbjct: 936  QKEYLK-LERQLRASLTELEAKKRQFDTEKAEHERKCQSERNEIDLLRKQLYVERQNAES 994

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              ++  +         + ++     A +     + ++L +       +Q      ++ + 
Sbjct: 995  LDKQRTM--------TLKKQIASLNAQLSASEKKNKRLEAEFVEFQEQQCNITKAKLREE 1046

Query: 541  LCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L   RG  + L++  + + +A   +      +        + L + ++ +  ++  +E+E
Sbjct: 1047 LFSLRGTIQALEKEKKFMSEAHNTTKLKLTAMQKQLDNLVKLLEV-EKIKSQTKALDELE 1105

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                  TAK E    A     L ++  Q+ QI    AM +
Sbjct: 1106 NMKLSCTAKEEKAVLAYEGEELRDIKSQLEQIRQVAAMRK 1145


>gi|256821803|ref|YP_003145766.1| replicative DNA helicase [Kangiella koreensis DSM 16069]
 gi|256795342|gb|ACV25998.1| replicative DNA helicase [Kangiella koreensis DSM 16069]
          Length = 461

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 56/168 (33%), Gaps = 18/168 (10%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K+       E ++L  ++    + +   + L    +     ++++  +       K    
Sbjct: 15  KIPPHSIEAEQSVLGGVMLDNEVWEMVSEMLLSTDFYVKNHREIFKAMEELANTAKPMDV 74

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L  +G        D  +  A L         +   + Y + +    R + + RQ
Sbjct: 75  ITLSEHLEHKG--------DTDISMAFLGDLAQNTPSIANIRAYAEIV----REKAIMRQ 122

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEV-HIQIHQI-ESQEAMIEG 640
                 +IA              ++ L ++   ++  I +++EA  EG
Sbjct: 123 LISASNEIADA----SFNPKGRGLAELMDMAERKVFAISQAREASGEG 166


>gi|210633965|ref|ZP_03297936.1| hypothetical protein COLSTE_01854 [Collinsella stercoris DSM 13279]
 gi|210159009|gb|EEA89980.1| hypothetical protein COLSTE_01854 [Collinsella stercoris DSM 13279]
          Length = 229

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 62/169 (36%), Gaps = 15/169 (8%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             L ++  + E  LL  L  +P   +   + + ++ + +   + +   + +         
Sbjct: 73  TDLERRQLMCERELLTMLTTYPDSFRPFAERITEVEWVDARNETIAWAVLATPEGTGAAE 132

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                + +C             ++  AG+ S+T++             L LY       R
Sbjct: 133 VMAAARAVCPE---------AAELVSAGMISSTSKHPTETNIGFLLDTLELY----TARR 179

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE-SQEAMIEGF 641
           + +  + ++   ++ G  E+ A+ I    +   +I ++E + E + + F
Sbjct: 180 RMKAAQGRLRSDSSLGSDERRALAIQATQDA-ARIRELERAVEGIADPF 227


>gi|198276328|ref|ZP_03208859.1| hypothetical protein BACPLE_02523 [Bacteroides plebeius DSM
          17135]
 gi|198270770|gb|EDY95040.1| hypothetical protein BACPLE_02523 [Bacteroides plebeius DSM
          17135]
          Length = 295

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 35 VKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
              YW   P  +E+TPSF  ND    +Y F     GD +
Sbjct: 26 TSKQYWYLSPLRNERTPSFKVNDRLNEWYDFGAATGGDLV 65


>gi|149758398|ref|XP_001497462.1| PREDICTED: similar to Hook homolog 1 (h-hook1) (hHK1) [Equus
           caballus]
          Length = 835

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/343 (11%), Positives = 105/343 (30%), Gaps = 28/343 (8%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           DG                   +   +     L   +D         +    +    +   
Sbjct: 340 DGSFDDPNTMVAKKYFHAQLQLEQLQEENFRLEAAKDDYRVHCEELEKQLIEFQHRN--- 396

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
            ++    E      +  D             + ++  + +      +R +++ L +  + 
Sbjct: 397 DELTSLAEETRALKDEIDVLRATSDKASKLESTVEVYRQKLQDLNDLRKQVKTLQETNMM 456

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPAI 497
                    ++  +    +   +   +            S R   L   +      H A+
Sbjct: 457 YMHNTVSLEEELKKANAARTQLETYKRQVQDLHSKLSSESKRADTLAFEMKRLEEKHEAL 516

Query: 498 LQE---QYQELADIRYDNNELQ--KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           L+E     ++   ++  N EL+  ++     +          E +   +    + E+  +
Sbjct: 517 LKEKERLIEQRDALKETNEELRCSQVQQDHLNQADASATKSYENLAAEIMPVEYREVFIR 576

Query: 553 LDRQVRDAGLWSA-TTEANIVDVRQGYQQALA-----------LYKRFRLLSRQKEEIEK 600
           L  + +   L    T    I ++++  +Q                +R R L +Q E+++K
Sbjct: 577 LQHENKMLRLQQEGTENERIEELQEQLEQKHRRMNELETEQRLSKERIRELQQQIEDLQK 636

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQEAMIE 639
            + +  AK E E ++ L   L     ++     +++ ++ +IE
Sbjct: 637 SLQEHGAKPEGESSSKLKQKLEAHMEKLTEVHEELQKKQELIE 679


>gi|297155310|gb|ADI05022.1| ATP-dependent Clp protease [Streptomyces bingchenggensis BCW-1]
          Length = 874

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 74/216 (34%), Gaps = 16/216 (7%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
           Q ++K+I + +   R +++          +  +++    + ++     +++ AL+    +
Sbjct: 322 QEYRKHIEKDAALERRFQQVLVDEPSVEDTISVLRGLRERLEVFHGVKIQDTALVSAATL 381

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           +H  I      +   I   +    +L + + S   E            + +    +    
Sbjct: 382 SHRYISDRFLPD-KAIDLVDEACARLRTEIDSMPAELDEITRRVTRLEIEDAALAKETD- 439

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------AQV 605
                 +  L     E   +      ++A    +R  +  R+ +E+ K++        + 
Sbjct: 440 ---PASEQRLAELRRELADLRAEADAKRAQWEAERQSI--RRVQELRKELEEVRRDAEEA 494

Query: 606 TAKGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEG 640
               +  + A L    L E+  ++   E Q A  +G
Sbjct: 495 ERVYDLNRAAELRYGRLQELERRLAAQEEQLAAKQG 530


>gi|269958118|ref|YP_003327907.1| replicative DNA helicase [Xylanimonas cellulosilytica DSM 15894]
 gi|269306799|gb|ACZ32349.1| replicative DNA helicase [Xylanimonas cellulosilytica DSM 15894]
          Length = 453

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 52/169 (30%), Gaps = 14/169 (8%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           +    ++    +   +    E ++L  ++     + +  + +    +     + ++  + 
Sbjct: 7   ESSYSATPAFDRTPPQDVNAEMSVLGGMLISKDAIADVVETIRGNDFYRPAHETVYDSII 66

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
             +   +      +   L  RG      +LDR    A L               Y + + 
Sbjct: 67  DLYGRGEPADAITVADELRRRG------ELDRIGGAAFLADLVAGVPTAANAGYYARIV- 119

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGE----AEKTAILISILHEVHIQI 628
              R R + R+  E   +I Q+    E     +      + ++ V  + 
Sbjct: 120 ---RERAVLRRLVEAGTRIVQLGYAREGGDVDDIVNNAQAEIYAVTERR 165


>gi|189461058|ref|ZP_03009843.1| hypothetical protein BACCOP_01705 [Bacteroides coprocola DSM
          17136]
 gi|265753993|ref|ZP_06089348.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|189432148|gb|EDV01133.1| hypothetical protein BACCOP_01705 [Bacteroides coprocola DSM
          17136]
 gi|263235707|gb|EEZ21231.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 295

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 18/39 (46%)

Query: 36 KGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
             YW   P  DE+TPSF  ND    +Y F     GD +
Sbjct: 27 SKQYWYLSPLRDERTPSFKVNDRLNEWYDFGAATGGDLV 65


>gi|75906555|ref|YP_320851.1| DnaB helicase [Anabaena variabilis ATCC 29413]
 gi|75700280|gb|ABA19956.1| primary replicative DNA helicase [Anabaena variabilis ATCC 29413]
          Length = 450

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 10/140 (7%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +L  +    E A+L  ++  P  +    + L    +  +  + ++        + K   
Sbjct: 13  NRLPPQNIEAEEAILGGILLDPEAIGRVSEVLITEAFYISAHRDIYQAALRLHGQGKPTD 72

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +   L +    +LL ++  + + A L   T  A  +D   G           + L R
Sbjct: 73  LLSVTSWLTDN---DLLTRIGGRNKLATLVDRTVSAVNIDALAGLVME-------KYLRR 122

Query: 594 QKEEIEKQIAQVTAKGEAEK 613
           Q  +   +I  +  + E E 
Sbjct: 123 QLIKAGNEIVHLGYETEKEL 142


>gi|317476183|ref|ZP_07935434.1| DNA primase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907594|gb|EFV29297.1| DNA primase [Bacteroides eggerthii 1_2_48FAA]
          Length = 295

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 35 VKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
              YW   P  +E+TPSF  ND    +Y F     GD +
Sbjct: 26 TSKQYWYLSPLRNERTPSFKVNDRLNEWYDFGAATGGDLV 65


>gi|220931195|ref|YP_002508103.1| hypothetical protein Hore_03470 [Halothermothrix orenii H 168]
 gi|219992505|gb|ACL69108.1| hypothetical protein Hore_03470 [Halothermothrix orenii H 168]
          Length = 815

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 65/449 (14%), Positives = 134/449 (29%), Gaps = 38/449 (8%)

Query: 144 LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE-EKIIEAGLLIDGDNSATSYDRF 202
              R                D++ +   H    G      +      I  D+      + 
Sbjct: 25  WQARCPAHEDKVESLSVSRGDNKINFHCHAGCSGKDILRAMGLNWSDIYFDDEPGKKKKS 84

Query: 203 RNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSI 262
           +    +  R   G+ +    RT +K    K         +  GK  +   G    L K  
Sbjct: 85  KVVKEYIYRDENGRPLHKTLRTANKDFLQKR--------YENGKWKWGLKGVRTVLYKLE 136

Query: 263 RKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD 322
                 N++  + LVEG  D  +L + G+    + LG A              R+V+  D
Sbjct: 137 EVKEAINNNDVVYLVEGEKDADNLHKIGLTGTCNPLG-AGKWKPGYTETLKGARVVILPD 195

Query: 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382
            D PG + A      +         +    L + ED   ++   G       +V+  P  
Sbjct: 196 NDKPGKKHARNIAKELHGKAKLVKILELPGLDKKEDVSDWLDKGGTKEKLLQLVKDCPEW 255

Query: 383 DMLWKRETENRSFNTPDERA--------ELEIHLKNCINHIKDQKLRYYYS------QAI 428
                   +   FN  D +          L     N     +                A+
Sbjct: 256 KPGINNWPDPLPFNNFDVKPIPVNILPNWLSDFAINLAEFTQTPIDMSIMLIISALGTAL 315

Query: 429 RDRLQQLFQKYITEHSG------YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            ++     +K  TE              +K+   +    P     +    + +  ++ +L
Sbjct: 316 ANKGVVQIRKGYTEPLNIWTCTVLPAGNRKSPVFKKIMKPILDYEERKREEIEPERRHAL 375

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           +E ++L   +       +Q +++A    D  + +++   +F+   E +      + + + 
Sbjct: 376 KEKSILEDQL-------KQKEKIAGNAKDQAKRKQIMQEIFNLDDEIQEMEIPTLPRLVA 428

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANI 571
                E L +L     +  +   + E +I
Sbjct: 429 SDVTTEKLAKLMED-NNGRIAILSPEGDI 456


>gi|147794011|emb|CAN64468.1| hypothetical protein VITISV_036942 [Vitis vinifera]
          Length = 1539

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 63/560 (11%), Positives = 163/560 (29%), Gaps = 39/560 (6%)

Query: 109  KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS 168
            + ++++  L  L   A + F    K     R    +      S       L      +++
Sbjct: 599  EHDRLRESLGNLKSSAREQFKKLQKEISGIRGSSPMRRINSSSEVGLCGILQEKASEKWT 658

Query: 169  LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
              +       +    +   +      S  S   +     F        VI    R+L + 
Sbjct: 659  DVDKTIDTLMTTLDTVYEQVNNIVYLSKASVSEWLQDWEFQ-GEIEAMVIEHSIRSLREE 717

Query: 229  ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
               +  N  +   F    ++Y         +     D         +L       L    
Sbjct: 718  FEERSWN--QNAHFCGNGSVYWPEKTKEISRLRQELDAISK-----MLSTSEFGQLISHG 770

Query: 289  AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
            +       +       +  ++L          ++G+     +     + +    +  +  
Sbjct: 771  SCEIGEEWNNTKGTDHFHRKVLSNHVSPATSVWEGNGKHEESKTSMPENLESSSLLKHMS 830

Query: 349  NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
               L +  +   + +R   ++  +++  + + L     K    +       E   +   +
Sbjct: 831  KEELFNHFKTEMTKMRRNHESQVQEMAEQYISLKGKFLKERGSSLPLRKDKEFDAMRKKI 890

Query: 409  KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
               I  + D  +      A  +  + L        +      +      D+K   + L  
Sbjct: 891  PEVILKLDDILVENEKLPAFSNNAESLGSLKDRLDTLLSENHQLRDSLTDRKKEVRYLST 950

Query: 469  SSLVKGKLSKKPSLREAALLLTL------INHPAILQEQYQEL----------------A 506
               V  +   + SL EA LL  +      I    I     +++                 
Sbjct: 951  QLSVAAEKMSQHSLAEAKLLKIIGNLKSAIEDAKIEASISEDVNKCILSEVTNQIKCDTE 1010

Query: 507  DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSA 565
            +   ++  +Q+++  +  +  +      +E+ +    +     +    + + R +     
Sbjct: 1011 ESNMESTLMQQIYEVILREAAQNAETTSKEVMKDAEAKLNIMNVKYDCENEARVSIEIKV 1070

Query: 566  TTEANIV----DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
              +   +    D ++  +Q + L +   L  +++  +E   A V  K + E  +  ++ L
Sbjct: 1071 VEKEKALRLEFDEKERLKQEIILLE-ASLEEKERSALEIADALVKEKEQFELASQELNNL 1129

Query: 622  HEVHIQIHQI---ESQEAMI 638
             E   Q  ++    S+EA I
Sbjct: 1130 REHTNQQQKLISESSREADI 1149


>gi|47847498|dbj|BAD21421.1| mFLJ00279 protein [Mus musculus]
          Length = 1335

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 103/287 (35%), Gaps = 22/287 (7%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                  +   EKL ++     +     E E        ++ ELE    +    +++++ 
Sbjct: 245 EMETMQSQLMAEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEE 304

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y QA + ++QQ  Q+   +        +K    +       + ++   +  +     
Sbjct: 305 RCQYLQAEKKKMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCK 364

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFVE------QKY 531
             +E  LL         + E    L +    +  L KL      + +D  E      ++ 
Sbjct: 365 LAKEKKLLE------DRVAEFTTNLMEEEEKSKSLAKLKNKHEAMITDLEERLRREEKQR 418

Query: 532 FLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              E+  ++L        + + +L  Q+ +  +  A  E    +++    +      +  
Sbjct: 419 QELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKE---EELQAALARVEEEAAQKN 475

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
           +  ++  E+E QI+++    E+E+ +   +     ++  ++  ++++
Sbjct: 476 MALKKIRELETQISELQEDLESERASRNKAEKQKRDLGEELEALKTE 522


>gi|57504956|ref|ZP_00370909.1| TnpY [Campylobacter coli RM2228]
 gi|57019292|gb|EAL55995.1| TnpY [Campylobacter coli RM2228]
          Length = 623

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 15/98 (15%)

Query: 1  MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          M Y +  I      + + + +  Q     +        +       HD    S     +K
Sbjct: 1  MQYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97
           F +  S    G  + F+    G SF E+VQ L   +G
Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84


>gi|73667187|ref|YP_303203.1| replicative DNA helicase [Ehrlichia canis str. Jake]
 gi|72394328|gb|AAZ68605.1| DnaB-like helicase,N-terminal:DnaB-likehelicase, C-terminal
           [Ehrlichia canis str. Jake]
          Length = 488

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/173 (9%), Positives = 57/173 (32%), Gaps = 15/173 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ---KYFLPEEIHQ 539
            E  LL +++    I       +    + +   ++++  +               +    
Sbjct: 24  AEQILLGSMLRDNRICDAVEDIITSDVFFDTLHRRIFEQIVKINKRGLVANEVSLKMFFD 83

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-----------F 588
              +      ++ L +    A +         + V    ++ L  + +            
Sbjct: 84  NDEDLIQSGGVEYLAKIAAKASIVFDIKNVANIVVDAYLRRCLISFGQDLISGAYNYDVD 143

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEG 640
                Q E   +++  + ++G+++KT    ++L   +  +I   ++ E +++G
Sbjct: 144 NSAIYQIENAAQKLFLLGSQGKSDKTYHQFALLVANIKKKIEFAKNNEGVLQG 196


>gi|54295882|ref|YP_122194.1| hypothetical protein plpp0039 [Legionella pneumophila str. Paris]
 gi|53755714|emb|CAH17216.1| hypothetical protein plpp0039 [Legionella pneumophila str. Paris]
          Length = 1955

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 54/190 (28%), Gaps = 22/190 (11%)

Query: 52   SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKK 110
            S   +   G ++ F     G+    +    G S F E+++  A      +P  + K  +K
Sbjct: 1575 SLKIDLDSGLWHHFETGESGNLFHLIEREKGLSGFKETLEHAAQYIHY-IPEYERKAPQK 1633

Query: 111  EKIQTDLIRLIE----VATDFFHHS-----------LKNARDKRLHYY----LDERGIDS 151
               + +   + E    +A   F  S           L   R    + +            
Sbjct: 1634 LNEKKE-REVKEGKRQLAQKLFQQSQPIQGTIAEKYLIIHRGLAHYDHADLRFCRSVYTK 1692

Query: 152  HAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIR 211
               E   +          + ++     ++ +   A      ++   ++    N  +    
Sbjct: 1693 TQDEQKHVPALLAFSKDEQGNIHHVQITKLEPHSANKDKSCESVKQTFGSISNYFVNLNH 1752

Query: 212  SSRGQVIAFG 221
              +G +  F 
Sbjct: 1753 HGKGDIAYFT 1762


>gi|284005930|ref|YP_003391748.1| hypothetical protein Slin_7006 [Spirosoma linguale DSM 74]
 gi|283821114|gb|ADB42949.1| hypothetical protein Slin_7006 [Spirosoma linguale DSM 74]
          Length = 323

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 8/73 (10%)

Query: 27 WDRRKTNAV-----KGDYWACCPFHDEKTPSFHCN--DSKGFYYCFSCHVKGDHLSFLSA 79
            +             + W C PF +E  PSFH +    K  +  F     G+ L F+  
Sbjct: 15 LTKLGHQPARTLKAGKELWYCSPFRNELEPSFHTSFLGGKWIWNDFG-DTGGNVLEFVMR 73

Query: 80 LLGCSFIESVQRL 92
                  ++ +L
Sbjct: 74 YYNTDVSGALAQL 86


>gi|56750469|ref|YP_171170.1| ClpB protein [Synechococcus elongatus PCC 6301]
 gi|56685428|dbj|BAD78650.1| ClpB protein [Synechococcus elongatus PCC 6301]
          Length = 883

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/204 (10%), Positives = 71/204 (34%), Gaps = 4/204 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI + +   R +++    +     +  +++    + ++     + + AL+   +   
Sbjct: 330 YRQYIEKDAALERRFQQVFVDQPTVEDTISILRGLKERYEVHHGVRISDNALVAAAVLST 389

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S   E      + +   +      +    L  
Sbjct: 390 RYISDRFLPDKAIDLVDESAARLKMEITSKPEELDEIDRKILQLEMERLSLQKE-SDLAS 448

Query: 556 QVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           Q R   L     +       +   +Q    +    + +  + +++   + Q     +  K
Sbjct: 449 QERLQRLEKELADLKEEQRSLSSQWQAEKDVITDIQSVKEEIDQVNLLMQQAERDYDLNK 508

Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636
            A L    L E+  +++++E   A
Sbjct: 509 AAELKYGKLTELQRKLNEMEGGLA 532


>gi|149030735|gb|EDL85772.1| rCG51904, isoform CRA_b [Rattus norvegicus]
          Length = 766

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 74/207 (35%), Gaps = 9/207 (4%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           Q+ +  +           K +  +D     + L +    K ++ ++  LRE  L      
Sbjct: 438 QVKELQLKLKHSQNLDPGKESLLKDLLETRELLEELLEGKQRVEEQLRLRERELTALKGA 497

Query: 494 HPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
               +    QE+  +R     + ++L   +     +      E   ++       EL K+
Sbjct: 498 LKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAAVEAE---RQKMSSLVRELQKE 554

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR----QKEEIEKQIAQVTAK 608
           L+    + G W    + N  ++R   Q+ L L      +      + E +++ + Q  A 
Sbjct: 555 LEETSEETGHWQNMFQKNKEELRAAKQELLQLRMEKEEIEEELGEKMEILQRDLEQARAS 614

Query: 609 -GEAEKTAILISILHEVHIQIHQIESQ 634
             + ++   L   L     ++ +++++
Sbjct: 615 TRDTQQVEELKKELQRTQGELKELQAE 641


>gi|85859724|ref|YP_461926.1| replicative DNA helicase [Syntrophus aciditrophicus SB]
 gi|85722815|gb|ABC77758.1| replicative DNA helicase [Syntrophus aciditrophicus SB]
          Length = 454

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 63/186 (33%), Gaps = 12/186 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++  +    E ++L  ++     L    + L    + +   ++++S +   +   +    
Sbjct: 12  RIPPQNREAEQSILGGILLDNESLHSVLEILQIPDFYSEAHRRIFSAILDLYDRNEPCDL 71

Query: 535 EEIHQRLCER------GFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQALALYK 586
             +   L ++      G    L  L   V  +   +   +       +R     A  +  
Sbjct: 72  ITLSNILNDKSQLDNVGGMAYLASLVDNVPSSANITYYAKIVKEKSVLRSLIGTATEILS 131

Query: 587 RFR----LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           R       +    ++ E+ I +++        + +  I+ +    I Q+  +++MI G  
Sbjct: 132 RSYDPVNDVEEVLDQAEQAIFEISQHKIKPAFSPMREIIKDSFKTIEQLYERKSMITGVP 191

Query: 643 KMSGRL 648
               R+
Sbjct: 192 TGFERI 197


>gi|242037103|ref|XP_002465946.1| hypothetical protein SORBIDRAFT_01g048700 [Sorghum bicolor]
 gi|241919800|gb|EER92944.1| hypothetical protein SORBIDRAFT_01g048700 [Sorghum bicolor]
          Length = 883

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 78/222 (35%), Gaps = 16/222 (7%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           ++LR   S +  D+ + L      +          N   +         + +S      +
Sbjct: 258 EELRETTSSSYLDQTKSLRSALEEKQKQIDSLSTSNTELQKSVKDLDERLSASKQSRDDA 317

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            +    + A++  L     + +E+     +    +     L S L     E +  + ++ 
Sbjct: 318 DEIISSQKAIICEL--EGQLSEERNLRREE---RDKAAHDLKSALHKVQAEAQEEIKKQA 372

Query: 538 HQRL-CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
              L  +R   E++ +L    ++  L      + + D R      +   K+ R L  Q +
Sbjct: 373 ESYLRQQREQKEVISKLQESEKETRLLVEILRSKLEDARDNL---VTSEKKTRELEAQLQ 429

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES--QEA 636
           +      Q+ +    +K+  L + L ++  ++   ++  +EA
Sbjct: 430 D-----EQLVSANNRKKSENLETELRKLKKELENEKAAREEA 466


>gi|38234823|ref|NP_940590.1| replicative DNA helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38201087|emb|CAE50811.1| Replicative DNA helicase [Corynebacterium diphtheriae]
          Length = 506

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 59/169 (34%), Gaps = 11/169 (6%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
            R+++G  +R    +  + +     +  E  +L  ++  P  + +  + L    +     
Sbjct: 49  QRERRGYKRREAAMASTEFRQPPHDAEAEQGVLGAMLLSPQTVIDTVELLVAEDFYRPAH 108

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           Q ++  +   F + K   P  +  RL           L+R      L +  +        
Sbjct: 109 QLIFEAIVGLFSDNKEIDPVIVAARLDRN------NDLERVGGAPYLHTLISSVPTAANA 162

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG-EAEKTAILISILHE 623
           + Y + +A     + L RQ      ++ Q+  +G E  +   +I    +
Sbjct: 163 RYYAEIVA----EKSLLRQLVNAGTRVVQLGYEGTEGAEVESVIDRAQQ 207


>gi|71409302|ref|XP_807004.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70870905|gb|EAN85153.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1129

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/257 (11%), Positives = 87/257 (33%), Gaps = 7/257 (2%)

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
               + ++ E       +++ + +  +   +   K++  +       RD+    ++  + 
Sbjct: 438 QQKTFAKKQEEYHKQQIEKKIKNQQEMSRQLQQSKEEVKQLQQQDKKRDKENHGYKTQLE 497

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE--AALLLTLINHPAILQ 499
           +            +   +    +      L +     +  L E  A +    + +  +  
Sbjct: 498 KMEEQMEEINNKNKTLKKSIEQKNQEIIELYEHAKDLQLQLEEMHAEIEQLRVENEELRA 557

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           E   +   ++  + + + L   L     E +    E   +    +   E  + L RQ+ +
Sbjct: 558 EDEHKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEE 617

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAIL 617
               +    A   D  +G Q+     ++   L RQ EE+  +  ++ A+ E +      +
Sbjct: 618 LRAENEELRAEHEDKTRGLQEV---SEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEV 674

Query: 618 ISILHEVHIQIHQIESQ 634
                ++  Q+ ++ ++
Sbjct: 675 SEQAEDLQRQLEELRAE 691



 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 95/273 (34%), Gaps = 5/273 (1%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +   +    + + +S   V  L +++ +    N   +    ++  +    + K++ L+  
Sbjct: 457 KIKNQQEMSRQLQQSKEEVKQLQQQDKKRDKENHGYKTQLEKMEEQMEEINNKNKTLKKS 516

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             Q  ++ ++        +      + +      + +         +    ++S++    
Sbjct: 517 IEQKNQEIIELYEHAKDLQLQLEEMHAEIEQLRVENEELRAEDEHKTRGLQEVSEQAEDL 576

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  L      +  +  E   +   ++  + + + L   L     E +    E   +    
Sbjct: 577 QRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGL 636

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E  + L RQ+ +    +    A   D  +G Q+     ++   L RQ EE+  +  
Sbjct: 637 QEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEV---SEQAEDLQRQLEELRAENE 693

Query: 604 QVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634
           ++ A+ E +      +     ++  Q+ ++ ++
Sbjct: 694 ELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAE 726



 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 63/163 (38%), Gaps = 5/163 (3%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            ++S++    +  L      +  +  E   +   ++  + + + L   L     E +   
Sbjct: 672 QEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELR 731

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            E+ ++    +   E  + L RQ+ +    +    A   D  +G Q+     ++   L R
Sbjct: 732 AEDENKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEV---SEQAEDLQR 788

Query: 594 QKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634
           Q EE+  +  ++ A+ E +      +     ++  Q+ ++ ++
Sbjct: 789 QLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAE 831



 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 88/259 (33%), Gaps = 17/259 (6%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            + +      E  EL    ++    +++   +    Q   + L+   ++   E     R 
Sbjct: 681 LQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEDENKTRG 740

Query: 450 WKKNARHRDQKGPSQRLMQSSLVK------------GKLSKKPSLREAALLLTLINHPAI 497
            ++ +   +        +++   +             ++S++    +  L      +  +
Sbjct: 741 LQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEEL 800

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
             E   +   ++  + + + L   L     E +    E   +    +   E  + L RQ+
Sbjct: 801 RAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQL 860

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TA 615
            +    +    A   D  +G Q+     ++   L RQ EE+  +  ++ A+ E +     
Sbjct: 861 EELRAENEELRAEHEDKTRGLQEV---SEQAEDLQRQLEELRAENEELRAEHEDKTRGLQ 917

Query: 616 ILISILHEVHIQIHQIESQ 634
            +     ++  Q+ ++ ++
Sbjct: 918 EVSEQAEDLQRQLEELRAE 936



 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 474  GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             ++S++    +  L      +  +  E   +   ++  + + + L   L     E +   
Sbjct: 917  QEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELR 976

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             E        RG  E+ +Q +   R      A  E    +     +    + ++   L R
Sbjct: 977  AE---DEHKTRGLQEVSEQAEDLQRQLEELRAENEELRGEHEDKTRGLQEVSEQAEDLQR 1033

Query: 594  QKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634
            Q EE+  +  ++ A+ E +      +     ++  Q+ ++ ++
Sbjct: 1034 QLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAE 1076



 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/259 (11%), Positives = 87/259 (33%), Gaps = 17/259 (6%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            + +      E  EL    ++    +++   +    Q   + L+   ++   EH    R 
Sbjct: 646 LQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRG 705

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR------------EAALLLTLINHPAI 497
            ++ +   +        +++   + +   +   R            +  L      +  +
Sbjct: 706 LQEVSEQAEDLQRQLEELRAENEELRAEDENKTRGLQEVSEQAEDLQRQLEELRAENEEL 765

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
             E   +   ++  + + + L   L     E +    E   +    +   E  + L RQ+
Sbjct: 766 RAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQL 825

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TA 615
            +    +    A   D  +G Q+     ++   L RQ EE+  +  ++ A+ E +     
Sbjct: 826 EELRAENEELRAEHEDKTRGLQEV---SEQAEDLQRQLEELRAENEELRAEHEDKTRGLQ 882

Query: 616 ILISILHEVHIQIHQIESQ 634
            +     ++  Q+ ++ ++
Sbjct: 883 EVSEQAEDLQRQLEELRAE 901



 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 61/163 (37%), Gaps = 5/163 (3%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            ++S++    +  L      +  +  E   +   ++  + + + L   L     E +   
Sbjct: 812 QEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELR 871

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            E   +    +   E  + L RQ+ +    +    A   D  +G Q+     ++   L R
Sbjct: 872 AEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEV---SEQAEDLQR 928

Query: 594 QKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634
           Q EE+  +  ++ A+ E +      +     ++  Q+ ++ ++
Sbjct: 929 QLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAE 971



 Score = 44.9 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 41/415 (9%), Positives = 129/415 (31%), Gaps = 21/415 (5%)

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
           E  + ++ +       +   +++  ++D +R+  +     +       + +   +N    
Sbjct: 455 EKKIKNQQEMSRQLQQSKEEVKQLQQQDKKRDKENHGYKTQLEKMEEQMEEINNKNKTLK 514

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
                   ++  L++ +  + L  +     +       + +        R    +  + E
Sbjct: 515 KSIEQKNQEIIELYEHAKDLQLQLEEMHAEIEQLRVENEELRAEDEHKTRGLQEVSEQAE 574

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK----NCIN 413
           D    +        E           +    E         +E       L+    +   
Sbjct: 575 DLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTR 634

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +++   +    Q   + L+   ++   EH    R  ++ +   +        +++   +
Sbjct: 635 GLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEE 694

Query: 474 ------------GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
                        ++S++    +  L      +  +  E   +   ++  + + + L   
Sbjct: 695 LRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEDENKTRGLQEVSEQAEDLQRQ 754

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L     E +    E   +    +   E  + L RQ+ +    +    A   D  +G Q+ 
Sbjct: 755 LEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEV 814

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634
               ++   L RQ EE+  +  ++ A+ E +      +     ++  Q+ ++ ++
Sbjct: 815 ---SEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAE 866



 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 61/163 (37%), Gaps = 5/163 (3%)

Query: 474  GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             ++S++    +  L      +  +  E   +   ++  + + + L   L     E +   
Sbjct: 952  QEVSEQAEDLQRQLEELRAENEELRAEDEHKTRGLQEVSEQAEDLQRQLEELRAENEELR 1011

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             E   +    +   E  + L RQ+ +    +    A   D  +G Q+     ++   L R
Sbjct: 1012 GEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEV---SEQAEDLQR 1068

Query: 594  QKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634
            Q EE+  +  ++ A+ E +      +     ++  Q+ ++ ++
Sbjct: 1069 QLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAE 1111



 Score = 37.6 bits (85), Expect = 6.4,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 77/234 (32%), Gaps = 15/234 (6%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
             + +      E  EL    ++    +++   +    Q   + L+   ++   EH    R 
Sbjct: 891  LQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRG 950

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR------------EAALLLTLINHPAI 497
             ++ +   +        +++   + +   +   R            +  L      +  +
Sbjct: 951  LQEVSEQAEDLQRQLEELRAENEELRAEDEHKTRGLQEVSEQAEDLQRQLEELRAENEEL 1010

Query: 498  LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
              E   +   ++  + + + L   L     E +    E   +    +   E  + L RQ+
Sbjct: 1011 RGEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQL 1070

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
             +    +    A   D  +G Q+     ++   L RQ EE+  +  ++ A+ E 
Sbjct: 1071 EELRAENEELRAEHEDKTRGLQEV---SEQAEDLQRQLEELRAENEELRAEHED 1121


>gi|189188632|ref|XP_001930655.1| myosin type-2 heavy chain 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972261|gb|EDU39760.1| myosin type-2 heavy chain 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 2305

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 86/260 (33%), Gaps = 30/260 (11%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL---RYYYSQAIRDRLQQLFQKYI 440
             + +R  +       +    L   +K  +   +       R    Q + +++QQ   +  
Sbjct: 776  RIIQRNFQVYLDLQSNPWWRLFARMKPMLGATRQAAEVKKRDEMIQQLEEKMQQ---EAA 832

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAI 497
                      +     +  +   +     +L K ++ K+  LREA L   L   I     
Sbjct: 833  ERQRVEDERRRAEMDIQRIQKTLESERALALDKEEIFKRLQLREAELSEKLAGAIEDQDQ 892

Query: 498  LQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLD 554
            L++Q   L    +    E + L   L             +I  +L        E  ++LD
Sbjct: 893  LEDQLDALMEAKKKTEEEAEHLRRELEQA---------GQIISKLEGETQELEEQARRLD 943

Query: 555  RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-SRQKEEIEKQIAQVTAKGEAEK 613
             Q+++  +  +          +   Q + +      L  R+ +++E ++     K + + 
Sbjct: 944  EQLKELEVIKSQ----RSQAEEKLGQEIKMLTSHLALKERKLQDLEAKL----LKTDQDL 995

Query: 614  TAILISILHEVHIQIHQIES 633
               L + + EV     QI+ 
Sbjct: 996  DIKLAASVKEVQASKKQIKE 1015



 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 40/374 (10%), Positives = 109/374 (29%), Gaps = 20/374 (5%)

Query: 284  LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343
            +++ +A      +       E     +      +    +     ++   + ++ +   L 
Sbjct: 1810 IAVLRASRAEQFAKSQAREAEETCAAIMAERKEMDSMVEDLQRTVQRYDERVEDLSTDLE 1869

Query: 344  PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT------ 397
               +    L +  ED       +     E  + ++           T+            
Sbjct: 1870 TALQAKKRLQNELED-YRSQHAHDVEDSETSLEQTRKKYQSELASLTQEIDQERENVILV 1928

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
             +E   L   ++   N   D+ L        + RL+   Q              +     
Sbjct: 1929 REENGRLREEIEELRNKWDDELLNSSTWAKEKSRLEMTLQTISDSRDEAANAHNEAQSKI 1988

Query: 458  DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP-AILQEQYQELADIRYDNNELQ 516
                   R +++++      +  ++ E   L + +      L +  +  +    +     
Sbjct: 1989 VSLLSQVRTLRTNVDDLAAERDSAIEEKKRLESRLQEAADALDDLSRSESPAMRNAAAYD 2048

Query: 517  KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            +    L S   +Q+      + +        + L++     R+A +     +A +    +
Sbjct: 2049 RDLLELKSGLAQQEDITAAAVGKMRRAEALAQELQKDIVAEREANVKLHKDKAAVEKALK 2108

Query: 577  GYQQALALY----------KRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEV 624
              Q  L             K  R L+ + +E+EK +    +   +E      +   + ++
Sbjct: 2109 DLQLRLVDLETKGYSGSAGKDVRFLNGRIQELEKALENSESTRLSESRSVRNVDRTVRDL 2168

Query: 625  HIQIHQIESQEAMI 638
              QI + + Q A +
Sbjct: 2169 QTQIERRDKQNAAV 2182


>gi|15643303|ref|NP_228347.1| hypothetical protein TM0537 [Thermotoga maritima MSB8]
 gi|4981051|gb|AAD35622.1|AE001729_2 hypothetical protein TM_0537 [Thermotoga maritima MSB8]
          Length = 758

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 87/265 (32%), Gaps = 17/265 (6%)

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-QAIRDRLQQ 434
               P     +    E         +  L+  L +  + I +         + +   L +
Sbjct: 55  ENYRPWFSNRFGGYLETSEGRVEFGQGRLDPELFSFTSFISEGVDNTLNGSKKVASFLME 114

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
            ++               N         ++ L        +  +    +  +LLL L   
Sbjct: 115 SYRNRPEAVELERIL---NEDFSVLMKKTKELEAEISNLKERVEAWKEKRRSLLLVLKRK 171

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             + ++  ++           ++L       F  +K      I  R+ E      L +++
Sbjct: 172 KELSRDLQEK-----------RRLLEEEIDRFESEKSERLSSIEARINE--VKAELLRVE 218

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +++ +    +A  E  + +  +  Q+   L +R   L R+ E +E++      + +    
Sbjct: 219 KELEEIERETAVPEEKVREAIELAQKLDYLRERGEELKREIESLEEKSKDTEERLKTIMK 278

Query: 615 AILISILHEVHIQIHQIESQEAMIE 639
              +S L E+ +++  ++ Q  ++E
Sbjct: 279 DFSVSSLEELKLKLENMKLQIELVE 303



 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/205 (9%), Positives = 77/205 (37%), Gaps = 12/205 (5%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            +R +L +L  +++   +      ++  +   +   +  +     ++  L  +   +   
Sbjct: 398 RLRKKLFELESEFMNLSTQKRSLIERKNQIVSKLKETAGVDNIEELEKFLRDQIVKKVFE 457

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +  L  + +  ++  + +        ++++L   +    VE      ++  + L E   
Sbjct: 458 RIPFLSKYGSEPRKAVENVE------EQMRELL--ILKSSVEASLSDKKKNLEELQE-YS 508

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            E  + L   +++ G+    +E  +  +R   ++   L K    L ++   + K+  ++ 
Sbjct: 509 REQEEVLKNTLKEIGV---DSEDKLKVLRDLLERRANLRKTRDSLEKEIANLMKEKEEIE 565

Query: 607 AKGEAEKTAILISILHEVHIQIHQI 631
           +     +   L   + ++  ++ ++
Sbjct: 566 SSRSNARIEELKREVEQIESELEKL 590


>gi|89897283|ref|YP_520770.1| hypothetical protein DSY4537 [Desulfitobacterium hafniense Y51]
 gi|89336731|dbj|BAE86326.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 482

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 50/185 (27%), Gaps = 21/185 (11%)

Query: 6   DFIKDLLIHIPISNLIG----QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            F  +        +L+     Q     R         Y            S     S+ F
Sbjct: 5   HFTDEQKQRANSVDLVDFLQRQGEQLTRSGREWRWQRYD-----------SVTVRGSQWF 53

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESV-QRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            +  S    G  + F+    G SF E+V   L    GV             K    L   
Sbjct: 54  RH--SRKEGGHAIDFIQEFYGLSFPEAVTLLLGGEFGVEWNQSSKSAPPARKAFA-LPEA 110

Query: 121 IEVATDFFHHSLKNAR--DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
                  F + +K      + L ++  E+ +         +    D R   R   ++  +
Sbjct: 111 NSDMRRVFAYLIKQRFISPEVLSHFAHEKLLYEDKTYHNAIFVGLDERSIARHAHKRGTY 170

Query: 179 SEEKI 183
           ++ + 
Sbjct: 171 TQGEP 175


>gi|124007892|ref|ZP_01692593.1| replicative DNA helicase [Microscilla marina ATCC 23134]
 gi|123986654|gb|EAY26444.1| replicative DNA helicase [Microscilla marina ATCC 23134]
          Length = 514

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 57/183 (31%), Gaps = 16/183 (8%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           GK+  +    E A+L  L+     L +    L    +     Q+++  +F  F E +   
Sbjct: 2   GKVPPQVIELEEAVLGALMIEKDALTDIIDVLKPNSFYKPAHQEIYQAIFELFSESQPVD 61

Query: 534 PEEIHQRLCERGFGEL------LKQLDRQVRDAGLWSATTEANIVDVR---------QGY 578
              + Q+L +    E+      + +L   V  A                        +  
Sbjct: 62  MLTVTQQLRKMAKLEMVGGPSYIMKLTSMVNSAANIEYHARIITEQAIKRDLIAISSEIQ 121

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI-LHEVHIQIHQIESQEAM 637
           ++A         L  + E+    I++   +        ++   + E+  +  Q +    +
Sbjct: 122 KEAFEDSSDVFTLLDKAEQALFDISENNIRKNYADMRTIMQDAIKELEERRDQKDGLTGI 181

Query: 638 IEG 640
             G
Sbjct: 182 PTG 184


>gi|58617318|ref|YP_196517.1| replicative DNA helicase [Ehrlichia ruminantium str. Gardel]
 gi|58416930|emb|CAI28043.1| Replicative DNA helicase [Ehrlichia ruminantium str. Gardel]
          Length = 486

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/173 (10%), Positives = 56/173 (32%), Gaps = 15/173 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ---KYFLPEEIHQ 539
            E  LL  ++    +       +    + +   ++++  +F              +    
Sbjct: 22  AEQILLGAMLRDNRVCDAVGDLITSEVFFDPLHRRIFEQIFKINKRGLIANELSLKMFFD 81

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-------FRLLS 592
                     ++ L +    A +         + V    ++ L  + +          + 
Sbjct: 82  NDEALTESGGVEYLAKIATKASIIFDIKNIANIVVDAYLRRCLISFGQDMITNAYNYDID 141

Query: 593 R----QKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEG 640
                Q E   +++  ++ +G+++ T   ++ L E +  +I   +S E  ++G
Sbjct: 142 NPAVYQIENAAQKLFLLSNQGKSDNTYNKLAFLIENITKRIEFAKSNEGTLQG 194


>gi|57239298|ref|YP_180434.1| replicative DNA helicase [Ehrlichia ruminantium str. Welgevonden]
 gi|58579264|ref|YP_197476.1| replicative DNA helicase [Ehrlichia ruminantium str. Welgevonden]
 gi|57161377|emb|CAH58301.1| replicative DNA helicase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417890|emb|CAI27094.1| Replicative DNA helicase [Ehrlichia ruminantium str. Welgevonden]
          Length = 486

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/173 (10%), Positives = 56/173 (32%), Gaps = 15/173 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ---KYFLPEEIHQ 539
            E  LL  ++    +       +    + +   ++++  +F              +    
Sbjct: 22  AEQILLGAMLRDNRVCDAVGDLITSEVFFDPLHRRIFEQIFKINKRGLIANELSLKMFFD 81

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-------FRLLS 592
                     ++ L +    A +         + V    ++ L  + +          + 
Sbjct: 82  NDEALTESGGVEYLAKIATKASIIFDIKNIANIVVDAYLRRCLISFGQDMITNAYNYDID 141

Query: 593 R----QKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEG 640
                Q E   +++  ++ +G+++ T   ++ L E +  +I   +S E  ++G
Sbjct: 142 NPAVYQIENAAQKLFLLSNQGKSDNTYNKLAFLIENITKRIEFAKSNEGTLQG 194


>gi|322367864|ref|ZP_08042434.1| Patched family protein [Haladaptatus paucihalophilus DX253]
 gi|320552571|gb|EFW94215.1| Patched family protein [Haladaptatus paucihalophilus DX253]
          Length = 1255

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 77/236 (32%), Gaps = 30/236 (12%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK-NARHRDQKGPSQRLMQSSLVKGKLSKK 479
           R    Q   D L +   +   +        K+ N      +  S+ L Q +    +   +
Sbjct: 223 RGQTLQQRSDELNESKAQLQAKGQELQAQAKQLNESKAQLRNQSEELKQRAQELNESRAE 282

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              R+A L +        L +  +ELA     N  LQ+  + +            E    
Sbjct: 283 LEQRQANLEVRA----QELNQTQRELAA---RNESLQERRATIEEAHQNGTINDTEY--- 332

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              E+    L ++      D    +  + A   D ++    A  L +R   L   K E+E
Sbjct: 333 ---EQRLDSLREEQAELKADQAQLANESAALQQDRQELEVDAQQLEQRAAELESDKAELE 389

Query: 600 K---QIAQVTAKGEAEKTA-------------ILISILHEVHIQIHQIESQEAMIE 639
           +   Q+ +   + +AE+                L     E+     +++ ++A +E
Sbjct: 390 QQSEQLQESAGQLQAERAELEQRSAELQQEGKELQQAFSELQQDKKELQEKQAALE 445



 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/265 (10%), Positives = 84/265 (31%), Gaps = 17/265 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           ++         ++         ++  EL+   +       + + R    +     L Q  
Sbjct: 242 QAKGQELQAQAKQLNESKAQLRNQSEELKQRAQELNESRAELEQRQANLEVRAQELNQTQ 301

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           ++    +                   +    +  L   +  +     + A L    N  A
Sbjct: 302 RELAARNESLQERRATIEEAHQNGTINDTEYEQRLDSLREEQAELKADQAQLA---NESA 358

Query: 497 ILQEQYQELADIRYDNNELQKL--WSFLFSDFVEQKYFLPEEIHQ-----RLCERGFGEL 549
            LQ+  QEL        + Q+L   +        +     E++ +     +       + 
Sbjct: 359 ALQQDRQELEV------DAQQLEQRAAELESDKAELEQQSEQLQESAGQLQAERAELEQR 412

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
             +L ++ ++     +  + +  ++++      A  ++ +    Q +E  +++ + + + 
Sbjct: 413 SAELQQEGKELQQAFSELQQDKKELQEKQAALEADSQQLKERGAQLKEDSQRLQEDSQEL 472

Query: 610 EAEKTAILISILHEVHIQIHQIESQ 634
             E  A L +   ++  +  Q++ Q
Sbjct: 473 -KEAQAELENDSEQLKEEGQQLQEQ 496



 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 92/281 (32%), Gaps = 15/281 (5%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +D         +   E                E++ +      E       L      ++
Sbjct: 204 QDLQQRGEELKEEGQELKQRGQTLQQRSDELNESKAQLQAKGQELQAQAKQLNESKAQLR 263

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +Q           +  +   ++         +   +  R    +  S +  ++++ +   
Sbjct: 264 NQSEELKQRAQELNESRAELEQRQANLEVRAQELNQTQRELAARNESLQERRATIEEAHQ 323

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           +   +  E         +   L    +E A+++ D  +L    S       ++     ++
Sbjct: 324 NGTINDTE---------YEQRLDSLREEQAELKADQAQLAN-ESAALQQDRQELEVDAQQ 373

Query: 537 IHQRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           + QR  E      EL +Q ++    AG   A          +  Q+   L + F  L + 
Sbjct: 374 LEQRAAELESDKAELEQQSEQLQESAGQLQAERAELEQRSAELQQEGKELQQAFSELQQD 433

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           K+E++++  Q   + ++++     + L E   ++ + +SQE
Sbjct: 434 KKELQEK--QAALEADSQQLKERGAQLKEDSQRLQE-DSQE 471


>gi|146344100|ref|YP_001201956.1| putative DNA primase [Pseudomonas fluorescens SBW25]
 gi|146187912|emb|CAM96241.1| putative DNA primase [Pseudomonas fluorescens SBW25]
          Length = 462

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 57/371 (15%), Positives = 103/371 (27%), Gaps = 31/371 (8%)

Query: 81  LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-----QTDLIRLIEVATDFFHHSLKNA 135
            G S  + V+ L   AGV  P       K++       +  L      A       L   
Sbjct: 82  NGMSNGDIVKTLCESAGVEPPDNRDNEAKQQSRAANGGRPPL--TTGQAIILVTQQLAQR 139

Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195
               L  +   RG  +  +   +LG   ++   L          E+      +  + +  
Sbjct: 140 NKGILDEFQQSRGYTNEVMATLRLGVFTNNDEVLSLLQAHGITREQARSIGIVSFEDETP 199

Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255
           ++ +     R+I       G+   + GR             P      +    Y F    
Sbjct: 200 SSVWSGMEGRVIGYWPHPDGEARIW-GRI------------PSGQGEARSNPKYRFS--- 243

Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-WKLS 314
               K I    ++   S ++ VEG +D  +L    V    +    ++   Q   L  +  
Sbjct: 244 PKSSKDIPYLFKQRQKSILVCVEGTLDAWALQLIKV-WGCAIGQASINSAQAAYLASQGI 302

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
                  DGD  G   A  +I         G  ++ + L RG D    +R  G+    K 
Sbjct: 303 TEAAHMVDGDHAGYEGALSSIREAE---AVGITLSIIALGRGMDDADAMRTAGREDALKA 359

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           ++ S         R   +               ++   N +     R +        L  
Sbjct: 360 LINSRMNAGEYMARYCASLLDQPL-PDLRRVAKIRAIANGLTTASKRKWL--DFSQSLGI 416

Query: 435 LFQKYITEHSG 445
              +       
Sbjct: 417 AADEESDALRA 427


>gi|269797037|ref|YP_003316492.1| primary replicative DNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269099222|gb|ACZ23658.1| primary replicative DNA helicase [Sanguibacter keddieii DSM 10542]
          Length = 461

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 45/149 (30%), Gaps = 10/149 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +   +    E ++L  ++     + +  ++L    +     + ++  +   +   +    
Sbjct: 26  RTPPQDIAAEQSVLGGMLISKDAIADVIEQLKGTDFYRPAHEAIYDTILDLYGRGEPADA 85

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L + G    + ++        L S    A             A   R R + R+
Sbjct: 86  ITVVAELTKHG---EMGRIGGAPYIHTLISMVPTAAN-------AGYYARIVRERAVLRR 135

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHE 623
             +   +I Q+    +      L++    
Sbjct: 136 LVQAGTRIVQLGYATDGGDVDELVNNAQA 164


>gi|258655293|ref|YP_003204449.1| ATP-dependent chaperone ClpB [Nakamurella multipartita DSM 44233]
 gi|258558518|gb|ACV81460.1| ATP-dependent chaperone ClpB [Nakamurella multipartita DSM 44233]
          Length = 874

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/205 (10%), Positives = 71/205 (34%), Gaps = 3/205 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++++I +     R +++          +  +++    + +      + ++AL+       
Sbjct: 322 YREHIEKDPALERRFQQVFVGEPSVEDTIGILRGIKERYEAHHGVRIADSALVSAATLSD 381

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             +  ++     I   +    +L   + S  VE           ++ E    + L    +
Sbjct: 382 RYITSRFLPDKAIDLIDEAASRLRMEIDSRPVEIDELQRAVDRLKMEELALEKELDAASQ 441

Query: 556 QVRDAGLWSATTEANIVDV-RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                        +  +    + +++  +   R   L ++ +E+  Q  +   +G+  K 
Sbjct: 442 DRLTRLRRDLADRSEQLTAMNERWEREKSGLNRVGELKKELDELRMQADRFQREGDLAKA 501

Query: 615 AILI-SILHEVHIQI-HQIESQEAM 637
           + L+ + +  +  ++   I + EA 
Sbjct: 502 SELLYARIPALERELSQAISADEAA 526


>gi|87200224|ref|YP_497481.1| genomic island protein [Novosphingobium aromaticivorans DSM
          12444]
 gi|87135905|gb|ABD26647.1| conserved hypothetical genomic island protein [Novosphingobium
          aromaticivorans DSM 12444]
          Length = 312

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 40 WACCPFHDEKTPSFHCNDSKG--FYYCF-SC 67
            CCP HD++TPS      +    ++CF  C
Sbjct: 45 MCCCPAHDDRTPSLSVTLGRKAILFHCFAGC 75


>gi|103485935|ref|YP_615496.1| virulence-associated protein E [Sphingopyxis alaskensis RB2256]
 gi|98976012|gb|ABF52163.1| virulence-associated protein E [Sphingopyxis alaskensis RB2256]
          Length = 309

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 40 WACCPFHDEKTPSFHCNDSKG--FYYCF-SC 67
            CCP HD++TPS      +    ++CF  C
Sbjct: 31 MCCCPAHDDRTPSLSVTLGRKAILFHCFAGC 61


>gi|313836451|gb|EFS74165.1| replicative DNA helicase [Propionibacterium acnes HL037PA2]
 gi|314929064|gb|EFS92895.1| replicative DNA helicase [Propionibacterium acnes HL044PA1]
 gi|314970989|gb|EFT15087.1| replicative DNA helicase [Propionibacterium acnes HL037PA3]
 gi|328906648|gb|EGG26423.1| replicative DNA helicase [Propionibacterium sp. P08]
          Length = 448

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 54/153 (35%), Gaps = 10/153 (6%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           S   ++      +   +    E ++L  +++    + +  +E+  + +     + +++ +
Sbjct: 2   SSAPVEPGPSLDRNPPQDIDAEKSVLGAMLSSKDAIADVVEEIKGVDFYRPGHELIFNTI 61

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
              +              L  RG      +L+R      L    T   +      Y + +
Sbjct: 62  TDLYGRGDPADTVTTADELDRRG------ELERAGGRLYLAELLTNVTVTANAAYYAKIV 115

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           A     + + R+  E   +IAQ+  +G+ E + 
Sbjct: 116 AD----KAVLRRLVEASIRIAQMGYQGQGEVSD 144


>gi|194041277|ref|XP_001924306.1| PREDICTED: TATA element modulatory factor [Sus scrofa]
          Length = 1016

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 85/281 (30%), Gaps = 20/281 (7%)

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
             ED    I+   +    +L       +      +             +   +       
Sbjct: 443 EKEDVCKEIKSMKEELATRLNSSETSDLLKEKDEQIRGLMEEGEKLSKQQLHNSNIIKKL 502

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
               K        +  ++++L ++            +   +HRD                
Sbjct: 503 RAKDKENENIIAKLNKKVKELEEELQHLKQVLDGKEEVEKQHRDNIK------------- 549

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           KL+     +E  L    ++   + ++     A +     EL  L      +  +      
Sbjct: 550 KLNSVVERQEKDLGRLQLDMNELEEKNRSIQAALDSAYKELTDLHKA---NAAKDSEAQE 606

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSR 593
             + + +  +   EL   L++   +A     T    + D+R   Q+A  A  ++   L  
Sbjct: 607 AALSREMRAK--EELSAALEKAQEEARQQQETLAIQVGDLRLALQRAEQAAARKEDYLRH 664

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +  E+++++ +   +   E +  + S    +  QI  +++ 
Sbjct: 665 EISELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 704


>gi|291303700|ref|YP_003514978.1| replicative DNA helicase [Stackebrandtia nassauensis DSM 44728]
 gi|290572920|gb|ADD45885.1| replicative DNA helicase [Stackebrandtia nassauensis DSM 44728]
          Length = 441

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 9/141 (6%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           SS     +     L E ++L  ++    ++ E   EL    + + + Q +++ +   F  
Sbjct: 3   SSEPIEAVPPHEQLAEQSVLGAMLYSANVIAELVPELTGHDFYDPKHQLVFAAICDMFAA 62

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                   I   L +R       +L R      + +    A           AL +  + 
Sbjct: 63  GTPVDAVSIVDELNKR------DELRRVGGAPYIHTLLRAAASAGSASY--HALRI-VKP 113

Query: 589 RLLSRQKEEIEKQIAQVTAKG 609
           + L R+  E   +I Q+  +G
Sbjct: 114 KALQRRLIEAGIRIQQLGYRG 134


>gi|68172019|ref|ZP_00545312.1| DnaB-like helicase, N-terminal [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998556|gb|EAM85316.1| DnaB-like helicase, N-terminal [Ehrlichia chaffeensis str. Sapulpa]
          Length = 239

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/173 (9%), Positives = 55/173 (31%), Gaps = 15/173 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ---KYFLPEEIHQ 539
            E  LL +++    I       +    + ++  ++++  +               +    
Sbjct: 24  AEQILLGSMLRDNRICDAVEDIITSDVFFDSLHRRIFEQIVKINKRGLVANEVSLKMFFD 83

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-----------F 588
              +      +  L +    A +         + V    ++ L  + +            
Sbjct: 84  NDEDLIESGGVDYLAKIAAKASIIFDIKNVANIVVDTYLRRCLISFGQDLISGAYNYDVD 143

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEG 640
                Q E   +++  +  +G+++KT    ++L   +  +I   ++ E  ++G
Sbjct: 144 NSAVYQIESAAQKLFLLGNQGKSDKTYHQFALLVANIKKRIEFAKNNEGTLQG 196


>gi|172038318|ref|YP_001804819.1| replicative DNA helicase [Cyanothece sp. ATCC 51142]
 gi|171699772|gb|ACB52753.1| replicative DNA helicase [Cyanothece sp. ATCC 51142]
          Length = 447

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 61/185 (32%), Gaps = 15/185 (8%)

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
           V   L  +    E ++L  ++  P  +      +    +     + ++        + + 
Sbjct: 5   VNQTLPPQNIEAEESILGGILLDPEAMGRVVDLITPEAFYIQSHKDIYHAALKLHGQGQP 64

Query: 532 FLPEEIHQRLCER-------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                +   L +        G  +L + LDR V    +    T      +R+    A   
Sbjct: 65  TDFLTVKSTLEDHHLLEKIGGLNKLTQLLDRTVSAVNIDRYATLVMDKYLRRQLIAAGHE 124

Query: 585 YKRF-----RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM-- 637
                    + L    +E EK+I  +T K   E    +   + +   ++ ++  Q A+  
Sbjct: 125 IVDLGFETTQELEIVLDESEKKIFALTQKRPQEGLIPISDTIIKTFNELEKLHEQTALPG 184

Query: 638 IE-GF 641
           IE GF
Sbjct: 185 IETGF 189


>gi|296133562|ref|YP_003640809.1| chromosome segregation protein SMC [Thermincola sp. JR]
 gi|296032140|gb|ADG82908.1| chromosome segregation protein SMC [Thermincola potens JR]
          Length = 1189

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 78/245 (31%), Gaps = 14/245 (5%)

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
            +       +   +  ++          + +++  L ++       Y  Y ++  +    
Sbjct: 170 YKNRKLQAARKLEDTEQNMVRINDIIAELENQVGPL-EEQANRAKTYIGYKEELDKLEIN 228

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
               Q   Q   ++    ++  LR+  ++           E  +    +   N ++  L 
Sbjct: 229 LAVHQLTDQKDRLETLTGEEAKLRQ-DIIALETEVRKTDSEIEELKHHLHLTNEDINNLQ 287

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             +F      +    +        +   E  ++L  ++ +     A   A     R   +
Sbjct: 288 QDIFEKSSAIEKLEADIRINGERNKNLKERQERLQAEINELSGKQA---AIREQSRGEME 344

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKG-----EAE----KTAILISILHEVHIQIHQ 630
               L    R +  +  E+E Q+ ++ A       + E    +    ++    ++ ++H 
Sbjct: 345 SYEKLVHNIRTMETELAELEAQLRELEADNRSKIDDIEQAKGEIIDTLNETAALNNRLHA 404

Query: 631 IESQE 635
           +E++E
Sbjct: 405 LEAEE 409



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 32/234 (13%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-RDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              I     +  +  I E +G  +Y  +  +  R  +   Q +++ + +  +L  +    
Sbjct: 146 IDEILSSKSEDRRLIIEEAAGIVKYKNRKLQAARKLEDTEQNMVRINDIIAELENQVGPL 205

Query: 484 EAAL--LLTLINHPAILQEQYQELADIRYDNNELQ---------KLWSFLFSDFVEQKYF 532
           E       T I +   L +    LA  +  + + +         KL   + +   E +  
Sbjct: 206 EEQANRAKTYIGYKEELDKLEINLAVHQLTDQKDRLETLTGEEAKLRQDIIALETEVRKT 265

Query: 533 L--PEEIHQRL--CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
               EE+   L         L + +  +        A    N    +        L +R 
Sbjct: 266 DSEIEELKHHLHLTNEDINNLQQDIFEKSSAIEKLEADIRINGERNK-------NLKERQ 318

Query: 589 RLLSRQKEEI--EKQIAQVTAKGEAEKTAILIS-------ILHEVHIQIHQIES 633
             L  +  E+  ++   +  ++GE E    L+         L E+  Q+ ++E+
Sbjct: 319 ERLQAEINELSGKQAAIREQSRGEMESYEKLVHNIRTMETELAELEAQLRELEA 372


>gi|298674540|ref|YP_003726290.1| ATP-dependent chaperone ClpB [Methanohalobium evestigatum Z-7303]
 gi|298287528|gb|ADI73494.1| ATP-dependent chaperone ClpB [Methanohalobium evestigatum Z-7303]
          Length = 880

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 76/220 (34%), Gaps = 23/220 (10%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++K I + +   R +            +  +++    + ++     ++++AL+   +   
Sbjct: 321 YRKNIEKDAALERRFMPVMVGEPDVEDTISILRGLKERYEVHHGVRIKDSALVEAAVLSD 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-------- 547
             + E++     I   +     + + + S   +      +     +              
Sbjct: 381 RYISERFLPDKAIDLVDEAAANVRTQIDSKPTQLDEVDRKITQLEIEREALKKETDPASK 440

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E L+ L++++ +    S T       +R+ +Q+   +    R    Q E+ + Q+ +   
Sbjct: 441 ERLESLEKELSNIREQSKT-------LREQWQKEKEIISELRSFKEQIEDTKTQLERAEN 493

Query: 608 KGEAEKTAIL--------ISILHEVHIQIHQIESQEAMIE 639
             + E  + L             E   ++HQ++ +  + E
Sbjct: 494 DNDFELASRLKYGTLIPLQRQYEEKEEELHQMQDEMLLRE 533


>gi|115378658|ref|ZP_01465808.1| replicative DNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|310823081|ref|YP_003955439.1| replicative DNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115364324|gb|EAU63409.1| replicative DNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309396153|gb|ADO73612.1| Replicative DNA helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 459

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 63/179 (35%), Gaps = 31/179 (17%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           +G+   +    E A+L  ++   +++    + +A   + +     +++ +      Q+  
Sbjct: 9   EGRRVHEDLAAERAVLGAVLADNSLIASVAEVVASDDFSSPAHSAIFAAMLKLDGSQRSV 68

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL---ALYKRFR 589
               + + L       +L QL      A L +      +      Y + +   A+ +R  
Sbjct: 69  DHLTLSEELK------VLGQLAAVGGPAYLMTLDQVVPLASNAVQYAKIVSDQAIRRRLA 122

Query: 590 LLSRQKEEIEKQ------------------IAQVTAKGE----AEKTAILISILHEVHI 626
           ++ R+  E+  Q                  +A+   +G+    ++     +++L ++  
Sbjct: 123 VVGREILEMASQETGDVEVVVDEAARKMFLLAEKRREGDLLPVSDLMEQTLNLLDKMKA 181


>gi|331006890|ref|ZP_08330139.1| putative transposon-like/mobilization protein [gamma
           proteobacterium IMCC1989]
 gi|330419306|gb|EGG93723.1| putative transposon-like/mobilization protein [gamma
           proteobacterium IMCC1989]
          Length = 322

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 17/113 (15%)

Query: 13  IHIPISNLIGQYVDWDRRKTNAVKGDYWA------CCPFHD-EKTPSFHCNDSKGFYYCF 65
             I I +          +     +  Y          P  D +KTPSF  N  K  ++  
Sbjct: 7   ETISIVDY------LSYKGIYPTEKRYKGGSEIRYYSPIRDSDKTPSFDVNIEKNVWFDL 60

Query: 66  SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
              V G  +  +  + G S  ++++ +    G+       +     + +  L 
Sbjct: 61  GASVGGGLVRGVQEMYGFSVSQALEDI-ERTGL---YKQGQTYSPSEPEKILY 109


>gi|323342376|ref|ZP_08082608.1| replicative DNA helicase DnaB [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463488|gb|EFY08682.1| replicative DNA helicase DnaB [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 456

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 59/179 (32%), Gaps = 13/179 (7%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           +        E ALL TL+  P  +    + ++    + N E QK++S +       +   
Sbjct: 2   RKLPYSQDAEMALLGTLLVFPESVAVVEEYDMQVDDFYNTEHQKIFSHMLEIIERGRVLD 61

Query: 534 PEEIHQRLCE----------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
              +  RL +               L +                E   +       Q++A
Sbjct: 62  ATTLITRLKDQHEIDSVGGVEYLFALTENSATPASVKHYIEVVQEKAQMRRLIDVGQSIA 121

Query: 584 L--YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
              +     L+   +E E++I +VT      +      +++EV   +++I      I G
Sbjct: 122 EKGFDSTTELTALLDEAEQRILEVTRVRRTTEMQRSREVVNEVMENLNRIRDNHDRITG 180


>gi|314965964|gb|EFT10063.1| replicative DNA helicase [Propionibacterium acnes HL082PA2]
 gi|315095192|gb|EFT67168.1| replicative DNA helicase [Propionibacterium acnes HL060PA1]
 gi|327328820|gb|EGE70580.1| replicative DNA helicase [Propionibacterium acnes HL103PA1]
          Length = 448

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 51/147 (34%), Gaps = 10/147 (6%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
             +      +   +    E ++L  +++    + +  +E+  + +     + +++ +   
Sbjct: 5   PAEPGPSLDRNPPQDIDAEKSVLGAMLSSKDAIADVVEEIKGVDFYRPGHELIFNTITDL 64

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
           +              L  RG      +L+R      L    T   +      Y + +A  
Sbjct: 65  YGRGDPADTVTTADELDRRG------ELERAGGRLYLAELLTNVTVTANAAYYAKIVA-- 116

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAE 612
              + + R+  E   +IAQ+  +G+ E
Sbjct: 117 --EKAVLRRLVEASIRIAQMGYQGQGE 141


>gi|310765425|gb|ADP10375.1| hypothetical protein EJP617_06940 [Erwinia sp. Ejp617]
          Length = 457

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/172 (10%), Positives = 60/172 (34%), Gaps = 14/172 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+       +    ++   +  +  + ++  +       +      + + + 
Sbjct: 19  AEQCVIGGLMLDNDSWDDVAMLISAEDFSYSVHRVIFHEMTRLVSAGRPIDLVTLAESIE 78

Query: 543 ERGFGEL--------LKQLDRQVRDAGLWSATTEA----NIVDVRQGYQQALALYKRFR- 589
            RG  +L        L +L + +  A      +E     +           +    +   
Sbjct: 79  SRGKDKLDQIGGFAYLAELSKNIPSAANIVPYSEIVAKYSRARQLAAIGTEITDSVKAPG 138

Query: 590 -LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             +++  EE E++I ++  + E ++   ++  L ++ I++ +  +    I G
Sbjct: 139 ADIAQVMEEAEQKITRLAERAEPQQAVTIVDGLEKLFIELERRCNTPDGITG 190


>gi|300712816|ref|YP_003738628.1| Kinetochore-Ndc80 complex, subunit Spc25 [Halalkalicoccus jeotgali
           B3]
 gi|299126500|gb|ADJ16837.1| Kinetochore-Ndc80 complex, subunit Spc25 [Halalkalicoccus jeotgali
           B3]
          Length = 640

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 55/158 (34%), Gaps = 13/158 (8%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + QE+ +   ++     EL        S   E+                  + + +L+ 
Sbjct: 353 DLRQEKVERRNELSRKLEELTAQRKEYTSTRDERAELERALETAETELADRTDRISELEA 412

Query: 556 QVRDAGLWSA------TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           +  +    +         + +  D+    ++   L  +   L R++  + + I  + ++ 
Sbjct: 413 RREELLAETEDLESAVEADEDDEDLLAAQKEVTQLELKRDRLERKQNALAEDIESLESQL 472

Query: 610 EAEKT-----AILISILHEVHIQIHQIESQEAMIEGFG 642
           + ++        + + L E+  +I +IE +   IE F 
Sbjct: 473 DEQEQLEARREEINTELEELRTRIERIERE--AIEAFN 508


>gi|269792687|ref|YP_003317591.1| ATP-dependent chaperone ClpB [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100322|gb|ACZ19309.1| ATP-dependent chaperone ClpB [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 871

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 71/201 (35%), Gaps = 2/201 (0%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI +     R ++           +  +++    + ++     +++ AL+   +   
Sbjct: 324 YRKYIEKDPALERRFQPVLVEAPDVEDTVSILRGLKERFEVHHGVRIQDGALVAAAVLSN 383

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-GELLKQLD 554
             + ++Y     I   +     + + + S   E    +   +   + E     E      
Sbjct: 384 RYITDRYLPDKAIDLVDEACAHIRTEIDSMPAELDQAVRRVMQLEIEEAALSKETDPASA 443

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +++       A        +R  Y++  +     R +  + EE +++I +     +    
Sbjct: 444 KRLEALRRELAEARNEADALRAQYEREKSAIGEIRAIRERIEETKRRIEEAERTYDLNLA 503

Query: 615 AIL-ISILHEVHIQIHQIESQ 634
           A L    L ++  ++ Q E++
Sbjct: 504 AQLKHGELPKLTRELAQKEAE 524


>gi|241766421|ref|ZP_04764297.1| ATP-dependent chaperone ClpB [Acidovorax delafieldii 2AN]
 gi|241363400|gb|EER58901.1| ATP-dependent chaperone ClpB [Acidovorax delafieldii 2AN]
          Length = 868

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++KYI + +   R ++K          +  +++    K ++     + + A++    ++H
Sbjct: 317 YRKYIEKDAALERRFQKILVGEPTVEATIAILRGLQEKYEVHHGVEITDPAIVAAAELSH 376

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL- 553
             I      +   I   +    K+   + S            I  ++          +  
Sbjct: 377 RYITDRFLPD-KAIDLIDEAASKIKIEIDSKPEVMDRLDRRLIQLQIEREAVRREKDEAS 435

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            ++        A+ +  I D+ + +Q   A  +  + +  Q E++++QI ++  KG+  K
Sbjct: 436 QKRFGLIEEEIASLQKEIADLDEIWQSEKAQAQGSQQVREQVEQVKQQIEELKRKGDFNK 495

Query: 614 TAIL-ISILHEVHIQIHQIESQEAMIEG 640
            A L    L ++  Q+ + +++E   +G
Sbjct: 496 VAELQYGKLPDLEKQLKEAQAKEEGKDG 523


>gi|154488139|ref|ZP_02029256.1| hypothetical protein BIFADO_01710 [Bifidobacterium adolescentis
           L2-32]
 gi|154083612|gb|EDN82657.1| hypothetical protein BIFADO_01710 [Bifidobacterium adolescentis
           L2-32]
          Length = 909

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 55/143 (38%), Gaps = 2/143 (1%)

Query: 496 AILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
            ++ E    L  ++     E+ +L   +    +E+ Y L    + +  E+   EL     
Sbjct: 398 DLVDEAAAHLRMELDSSPEEIDELRRQVDRLKMEKSYLLGNPKNDKAAEKAEAELDDSAK 457

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            ++ D     A     +  ++  +      + R   L ++ +E+  Q  +   +G+  K+
Sbjct: 458 DRLADLNQEIADKSEKLNGLKARWDAEKNGHNRIGDLRKKLDELRTQAEKYEREGDLAKS 517

Query: 615 AIL-ISILHEVHIQIHQIESQEA 636
           + +    +  +  +I Q E  EA
Sbjct: 518 SAINYGEIPAIQKEIAQAEKNEA 540


>gi|282854526|ref|ZP_06263862.1| replicative DNA helicase [Propionibacterium acnes J139]
 gi|282582387|gb|EFB87768.1| replicative DNA helicase [Propionibacterium acnes J139]
 gi|315105310|gb|EFT77286.1| replicative DNA helicase [Propionibacterium acnes HL050PA2]
          Length = 448

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 51/147 (34%), Gaps = 10/147 (6%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
             +      +   +    E ++L  +++    + +  +E+  + +     + +++ +   
Sbjct: 5   PAEPGPSLDRNPPQDIDAEKSVLGAMLSSKDAIADVVEEIKGVDFYRPGHELIFNTITDL 64

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
           +              L  RG      +L+R      L    T   +      Y + +A  
Sbjct: 65  YGRGDPADTVTTADELDRRG------ELERAGGRLYLAELLTNVTVTANAAYYAKIVA-- 116

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAE 612
              + + R+  E   +IAQ+  +G+ E
Sbjct: 117 --EKAVLRRLVEASIRIAQMGYQGQGE 141


>gi|317501420|ref|ZP_07959619.1| TnpY protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897164|gb|EFV19236.1| TnpY protein [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 623

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 15/93 (16%)

Query: 1  MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          MNY +  I      + + + +  Q     +        +       HD    S     +K
Sbjct: 1  MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
           F +  S    G  + F+    G SF E+VQ L
Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLL 79


>gi|312885883|ref|ZP_07745515.1| conserved hypothetical protein [Mucilaginibacter paludis DSM
          18603]
 gi|311301690|gb|EFQ78727.1| conserved hypothetical protein [Mucilaginibacter paludis DSM
          18603]
          Length = 302

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFI-----ESVQRLAA 94
          W   P   EKT SF        ++ +   V GD +  +   L  S +     ++++ L  
Sbjct: 31 WYLSPRRIEKTASFQVCYKTNRWHDWGDGVHGDGIDLVRFHLNQSGVNDTVADALRWLGN 90

Query: 95 IAG 97
          + G
Sbjct: 91 MIG 93


>gi|283768423|ref|ZP_06341335.1| replicative DNA helicase [Bulleidia extructa W1219]
 gi|283104815|gb|EFC06187.1| replicative DNA helicase [Bulleidia extructa W1219]
          Length = 454

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 51/169 (30%), Gaps = 12/169 (7%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +        E + L T++ +P    +    L +  +     Q ++  L     +     
Sbjct: 2   ARKLPTVPDIEKSFLGTILLYPEGNHQVLDSLEEQDFFEERHQYVFRILKKLREKGIPSE 61

Query: 534 PEEIHQRLCERGFGELL----------KQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
              +   L +    +L+          +      +         E  I        +A+A
Sbjct: 62  IPSVQSALEDEKLLDLVGGFHYLLELQESAISYNKPEQFVPTLKEKRIQREMIQASEAIA 121

Query: 584 L--YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
              Y+    L     E E+ I ++    EA     +I  + E+  ++ +
Sbjct: 122 EKGYEGVSDLGEYLSEAEEYILRIARSREAGGFKDMIQTMDELKNELKR 170


>gi|326803886|ref|YP_004321704.1| chromosome segregation protein SMC [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650714|gb|AEA00897.1| chromosome segregation protein SMC [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 1186

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 83/232 (35%), Gaps = 24/232 (10%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +  ++    + +R +LQ + Q+     S      K+ A  + +    +  ++S+  +   
Sbjct: 289 NYVVKLQAVEKLRSQLQMMEQEQRFIQSNRQSQEKEQANLQAKIEKMKTDLKSNQAQLDK 348

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADI-RYDNNELQKLWSFLFSDFVEQKYFLPE 535
            +K    +A             Q    +LA +  Y   +L+ L +   +   E+      
Sbjct: 349 YQKTYQSQA----------DSYQSLKDQLAALSDYSQEDLEDLRNQYIAYLQEE-----S 393

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALALYKRFRLLSRQ 594
            +  ++ +        Q +++     +  +  E A + D ++G  Q ++  ++ + L   
Sbjct: 394 HLSNQIQQTEKDIQQGQKNQEKYAERIRISQKEQAKLEDQQEGLDQEIS--QKEQALKNL 451

Query: 595 KEEIEKQIAQVTAKGEA-----EKTAILISILHEVHIQIHQIESQEAMIEGF 641
            +E + Q   +    +           L   L     Q+  +++ E   EGF
Sbjct: 452 LQEYQIQAQSLQQAQDQVQKATNANQTLYQKLLRKQAQLDSLKNLEDNHEGF 503


>gi|270308657|ref|YP_003330715.1| hypothetical protein DhcVS_1287 [Dehalococcoides sp. VS]
 gi|289433174|ref|YP_003463047.1| hypothetical protein DehalGT_1232 [Dehalococcoides sp. GT]
 gi|270154549|gb|ACZ62387.1| hypothetical protein DhcVS_1287 [Dehalococcoides sp. VS]
 gi|288946894|gb|ADC74591.1| hypothetical protein DehalGT_1232 [Dehalococcoides sp. GT]
          Length = 701

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 22/128 (17%)

Query: 27  WDRRKTNAVKGDYWACCPFHDE-KTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSF 85
            ++       G Y + CPFH++  TP+       GFY C +C  KG              
Sbjct: 12  LEKVSGPDKNGWYTSLCPFHNDQTTPNLRFT-ENGFY-CLACGEKG-------------- 55

Query: 86  IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD-FFHHSLKNARDKRLHYYL 144
             S+ +LA   GV             K  + +    +  +   F       +     +  
Sbjct: 56  --SLSKLANKLGVSFYPDSSTSH--NKKISSIYDYRDENSKLLFQVVRYTPKAFNQRHPN 111

Query: 145 DERGIDSH 152
            + G   +
Sbjct: 112 GKGGWIYN 119


>gi|239994127|ref|ZP_04714651.1| replicative DNA helicase [Alteromonas macleodii ATCC 27126]
          Length = 461

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 48/143 (33%), Gaps = 10/143 (6%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
            S      ++ K K+       E ++L +++  P    +  + + D  + N   Q ++  
Sbjct: 2   ASASKNDKNVEKLKVPPHSIEAEQSVLGSMLIDPESWDKVAELVTDNDFYNRSHQIIFRA 61

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +       +      + + L +        +L+     A L               Y Q 
Sbjct: 62  ITRLLNSSQPIDLITVSEELEKH------DELEDAGGFAYLGELAKNTPSSANVVSYAQI 115

Query: 582 LALYKRFRLLSRQKEEIEKQIAQ 604
           ++     R ++R+   +  +IA+
Sbjct: 116 IS----ERAITRELIGVAHEIAE 134


>gi|221635912|ref|YP_002523788.1| von Willebrand factor type A [Thermomicrobium roseum DSM 5159]
 gi|221157714|gb|ACM06832.1| von Willebrand factor type A [Thermomicrobium roseum DSM 5159]
          Length = 699

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 74/235 (31%), Gaps = 39/235 (16%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D  L+    +  + +L  L Q                    + +   Q L+ S   +   
Sbjct: 149 DPALQRLLERMAQQKLAFLDQLPADPAGRIRALSDYEFMDPEARRKFQELLASLQRQVLE 208

Query: 477 SKKPSLREAALLLTLINH--PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                L++A      I +  P  L+E  Q L D+           + L  +  +      
Sbjct: 209 QTFQGLQQA------IQNVTPEALRELRQMLRDL-----------NELLREHAQGGQPDL 251

Query: 535 EEIHQRLC---ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
           E    R      R F  + + LD   R      +  ++   ++RQ  +QAL    R   L
Sbjct: 252 ERFKHRWGHYFGRDFNSVDELLDHLARQMAAVQSLLDSLPPEMRQQLEQALEAALRDPEL 311

Query: 592 SRQKEEIEKQIAQVTAK----------GEAE-------KTAILISILHEVHIQIH 629
            ++  ++ + + Q+  +          G  E       +    +  + ++  Q+ 
Sbjct: 312 QQELRQLGRLLGQLMPENPYRQAQPFSGSEELTLSQALRLMEQLREMQDIEEQLE 366



 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 68/232 (29%), Gaps = 25/232 (10%)

Query: 425 SQAIRDRLQQLFQ------KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +  RL ++ Q      +   +         +       +   +   QS+  +     
Sbjct: 87  LDDLNQRLDEVIQTERAGIERRVQEGRERLARARERVAPVSEAGEEGQTQSNEGETGDDA 146

Query: 479 KPSLREAALLLTLINHPAILQE--------QYQELADIRYDNNELQKLWSFLFSDFV--- 527
                   LL  +        +        + + L+D  + + E ++ +  L +      
Sbjct: 147 PTDPALQRLLERMAQQKLAFLDQLPADPAGRIRALSDYEFMDPEARRKFQELLASLQRQV 206

Query: 528 -EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
            EQ +   ++  Q +      EL + L          +   + ++   +  +        
Sbjct: 207 LEQTFQGLQQAIQNVTPEALRELRQMLRDLNELLREHAQGGQPDLERFKHRWGHYFGRDF 266

Query: 587 R-----FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQI 631
                    L+RQ   ++  +  +  +   +    L + L   E+  ++ Q+
Sbjct: 267 NSVDELLDHLARQMAAVQSLLDSLPPEMRQQLEQALEAALRDPELQQELRQL 318


>gi|317484321|ref|ZP_07943242.1| replicative DNA helicase [Bilophila wadsworthia 3_1_6]
 gi|316924399|gb|EFV45564.1| replicative DNA helicase [Bilophila wadsworthia 3_1_6]
          Length = 449

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 10/136 (7%)

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
             ++ +  ++       E A+L  LI  P+ + +    L    +     Q L++      
Sbjct: 7   TATTDLARRVPPHSVEAERAVLAGLILRPSAMGQIAPMLHPEDFYLPAHQTLYAAALGLH 66

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
            + +      + + L ++G       L++    A +     +     V     +  A   
Sbjct: 67  TDNRPVDLVTLAEHLRDQG------SLEQAGGAAYI----ADLAQSHVSAANAEYYAKLV 116

Query: 587 RFRLLSRQKEEIEKQI 602
           R + + R   E   +I
Sbjct: 117 RDKSIQRGLIEAGAKI 132


>gi|313808581|gb|EFS47041.1| replicative DNA helicase [Propionibacterium acnes HL087PA2]
          Length = 448

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/188 (10%), Positives = 54/188 (28%), Gaps = 19/188 (10%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           S    +      +   +    E ++L  +++    + +  +E+  + +     + +++ +
Sbjct: 2   SSAPAEPGPSLDRNPPQDIDAEKSVLGAMLSSKDAIADVVEEIKGVDFYRPGHELIFNTI 61

Query: 523 FSDFVEQKYFLPEEIHQRLCERG----------FGELLKQL---------DRQVRDAGLW 563
              +              L  RG            ELL  +          + V +  + 
Sbjct: 62  TDLYGRGDPADTVTTADELDRRGELGRAGGRLYLAELLTNVTVTANAAYYAKIVAEKAVL 121

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
               EA+I   + GYQ    +        +   ++  +         +E        L  
Sbjct: 122 RRLVEASIRIAQMGYQGQGEVADIVDAAQQTLYDVSTRKTSEEYHPLSELFESTFDELEA 181

Query: 624 VHIQIHQI 631
           +  +   +
Sbjct: 182 IEARGDAM 189


>gi|314980713|gb|EFT24807.1| replicative DNA helicase [Propionibacterium acnes HL110PA3]
 gi|315090968|gb|EFT62944.1| replicative DNA helicase [Propionibacterium acnes HL110PA4]
          Length = 448

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 51/147 (34%), Gaps = 10/147 (6%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
             +      +   +    E ++L  +++    + +  +E+  + +     + +++ +   
Sbjct: 5   PAEPGPSLDRNPPQDIDAEKSVLGAMLSSKDAIADVVEEIKGVDFYRPGHELIFNTITDL 64

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
           +              L  RG      +L+R      L    T   +      Y + +A  
Sbjct: 65  YGRGDPADTVTTADELDRRG------ELERAGGRLYLAELLTNVTVTANAAYYAKIVA-- 116

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAE 612
              + + R+  E   +IAQ+  +G+ E
Sbjct: 117 --EKAVLRRLVEASIRIAQMGYQGQGE 141


>gi|332529046|ref|ZP_08405011.1| ATPase [Hylemonella gracilis ATCC 19624]
 gi|332041490|gb|EGI77851.1| ATPase [Hylemonella gracilis ATCC 19624]
          Length = 874

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 77/200 (38%), Gaps = 4/200 (2%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++KYI + +   R ++K          +  +++    K ++     + + A++    ++H
Sbjct: 318 YRKYIEKDAALERRFQKVLVEEPTVEQTIAILRGLQEKYEVHHGVDITDPAIVAAAELSH 377

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQL 553
             I      +   I   +    K+   + S            I  ++       E  +  
Sbjct: 378 RYITDRFLPD-KAIDLIDEAAAKIKIEIDSKPEVMDKLDRRMIQLKIEREAMKKETDEAS 436

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            +++          +    D+ + ++   A  +  + L  + E+++ QI ++T KG+  +
Sbjct: 437 QKRLALIEEEIGKLQKEAADLEEIWKLEKAQAQGGQHLREEIEKLKGQIEELTRKGDFNR 496

Query: 614 TAIL-ISILHEVHIQIHQIE 632
            A L    L E+  ++++++
Sbjct: 497 VAELQYGKLPELEKRLNEVQ 516


>gi|313127260|ref|YP_004037530.1| condensin subunit smc [Halogeometricum borinquense DSM 11551]
 gi|312293625|gb|ADQ68085.1| condensin subunit Smc [Halogeometricum borinquense DSM 11551]
          Length = 1198

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 82/229 (35%), Gaps = 9/229 (3%)

Query: 407 HLKNCINHIKD-QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
            L+     I D +  R    Q IRD   QL      E +       ++      +     
Sbjct: 696 RLERLAVEISDLEDDRREIEQEIRDIESQLDDA--REKASDAADRVRSVEADIDRAEEDV 753

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFS 524
             + + ++    +   LRE      +      L      L ADI    +E+ +L S L  
Sbjct: 754 EEKKAEIEQLEDRIEELREKR--AEVDEEMQSLDTDIDALTADIDDVQSEIDELESELAD 811

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
             + +     +EI   + E+     + +LD ++ +  L     E  I D+ +  + A   
Sbjct: 812 SKIPELTAQADEIRAEIEEKEDR--MDELDGRLNELQLEKEYAEDAIEDLNETVESAQDR 869

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
               R + R+KE+  ++  +   + + E  + L + L E+  +   +  
Sbjct: 870 KADARDVIREKEQAIEE-KEAVLEEKREAVSDLEAELKELKAERSDLRE 917



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 52/141 (36%), Gaps = 7/141 (4%)

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
           E++D+    ++ +++   +     +      +        R     + + +  V +    
Sbjct: 703 EISDLE---DDRREIEQEIRDIESQLDDAREKASDAADRVRSVEADIDRAEEDVEEKKAE 759

Query: 564 SATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
               E  I ++R+   +     +        L+   ++++ +I ++ ++    K   L +
Sbjct: 760 IEQLEDRIEELREKRAEVDEEMQSLDTDIDALTADIDDVQSEIDELESELADSKIPELTA 819

Query: 620 ILHEVHIQIHQIESQEAMIEG 640
              E+  +I + E +   ++G
Sbjct: 820 QADEIRAEIEEKEDRMDELDG 840



 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 76/243 (31%), Gaps = 28/243 (11%)

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            L++    I++  LR    +    RL QL  +  T         ++       K      
Sbjct: 202 ELESVEERIEEADLR---IEEKESRLDQLEDERETALKYQSLREEREEYEGYLKAAELED 258

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
            ++ L + +   +    +   L         L  +   ++ +     EL +L   +    
Sbjct: 259 KRADLERTESKAETKAEKLESLR------EELDTRQGRVSRLE---AELDELSKEIERKG 309

Query: 527 VEQKYFLPEEI------HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +++  +  EI        RL          ++D    +        +     +      
Sbjct: 310 EDEQLRIKSEIESVKGEIDRLENA-IEAAEDRIDEAETERRKAFVELDRKQEMIDDVEDD 368

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGE---------AEKTAILISILHEVHIQIHQI 631
             A+      +  + +  E ++A+V A+ +          ++ A   S L E+  + + +
Sbjct: 369 IRAVKVEKASVKSEIKTKETELAEVEAEIDSVDTEFDELKDELAAKKSQLEELKTERNDL 428

Query: 632 ESQ 634
           + +
Sbjct: 429 QRE 431


>gi|157878986|ref|XP_001687323.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|321438238|emb|CBZ11990.1| hypothetical protein LMJF_03_0270 [Leishmania major strain Friedlin]
          Length = 2354

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/333 (12%), Positives = 100/333 (30%), Gaps = 20/333 (6%)

Query: 319  LCFDGDDPGLRAAYKAIDLVLCH-----LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
            L  DGD+   + A  A +L                    L+   D             ++
Sbjct: 1234 LAADGDEARQQLAANAEELQQRLDTATQQRAELEAQLARLAADRDEARQQLAANAEELQQ 1293

Query: 374  LIVESLPLV---DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  +       +    R   N            +   +      +    R    Q +  
Sbjct: 1294 RLDTATQQRAELEAQVARLAANAEELQQRLDTATQQRAELEARVARLAADRDEARQQLAA 1353

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
              ++L Q+  T          + AR    +  +++ + ++  + +     + ++ A L  
Sbjct: 1354 NAEELQQRLDTATQQRAELEARVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEA 1413

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                  +     +    +     +  +L     +     +    +++          + L
Sbjct: 1414 --QVARLAANAEELQQRLDTATQQRAEL-EARVARLAADRDEARQQLAA--NAEELQQRL 1468

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
                +Q  +     A   A+  + RQ     A  L +R    ++Q+ E+E ++A++ A G
Sbjct: 1469 DTATQQRAELEAQVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEARVARLAADG 1528

Query: 610  EAEK------TAILISILHEVHIQIHQIESQEA 636
            +  +         L   L     Q  ++E+Q A
Sbjct: 1529 DEARQQLAANAEELQQRLDTATQQRAELEAQLA 1561



 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 77/281 (27%), Gaps = 17/281 (6%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     A    +               E           +             D      
Sbjct: 253 QRAELEARVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQVARLAADGDEARQ 312

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              A  + LQQ       + +       + A  RD+           L +   +      
Sbjct: 313 QLAANAEELQQRLDTATQQRAELEARVARLAADRDEARQQLAANAEELQQRLDTATQQRA 372

Query: 484 EAAL-LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           E    L  L        E  Q+LA         ++L   L +   ++     +       
Sbjct: 373 ELEAQLARLAAD---RDEARQQLAA------NAEELQQRLDTATQQRAELEAQVARLAAN 423

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQ 601
                + L    +Q  +     A   A+  + RQ     A  L +R    ++Q+ E+E +
Sbjct: 424 AEELQQRLDTATQQRAELEARVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAR 483

Query: 602 IAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
           +A++ A G+  +         L   L     Q  ++E+Q A
Sbjct: 484 VARLAADGDEARQQLAANAEELQQRLDTATQQRAELEAQVA 524



 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 7/218 (3%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            ++ ++ RL    Q+     +   R        R Q   +   +Q  L      +     E
Sbjct: 937  AEELQQRLDTATQQRAELEAQLARLAADRDEARQQLAANAEELQQRLDTATQQRAE--LE 994

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--C 542
            A L     +     Q+      +++   +   +  + L +          +E  Q+L   
Sbjct: 995  AQLARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQVARL-AADRDEARQQLAAN 1053

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQ 601
                 + L    +Q  +     A   A+  + RQ     A  L +R    ++Q+ E+E Q
Sbjct: 1054 AEELQQRLDTATQQRAELEARVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQ 1113

Query: 602  IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +A++ A G+  +   L +   E+  ++     Q A +E
Sbjct: 1114 VARLAADGDEAR-QQLAANAEELQQRLDTATQQRAELE 1150



 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 82/284 (28%), Gaps = 12/284 (4%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +     A    +               E           +             D+     
Sbjct: 989  QRAELEAQLARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQVARLAADRDEARQ 1048

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               A  + LQQ       + +       + A  RD+           L +   +      
Sbjct: 1049 QLAANAEELQQRLDTATQQRAELEARVARLAADRDEARQQLAANAEELQQRLDTATQQRA 1108

Query: 484  E--AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            E  A +     +     Q+      +++   +   +  + L    V +     +E  Q+L
Sbjct: 1109 ELEAQVARLAADGDEARQQLAANAEELQQRLDTATQQRAEL-EARVARLAADRDEARQQL 1167

Query: 542  --CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEI 598
                    + L    +Q  +     A   A+  + RQ     A  L +R    ++Q+ E+
Sbjct: 1168 AANAEELQQRLDTATQQRAELEAQLARLAADRDEARQQLAANAEELQQRLDTATQQRAEL 1227

Query: 599  EKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
            E Q+A++ A G+  +         L   L     Q  ++E+Q A
Sbjct: 1228 EAQVARLAADGDEARQQLAANAEELQQRLDTATQQRAELEAQLA 1271



 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 82/286 (28%), Gaps = 12/286 (4%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +     A    +               E           +             D      
Sbjct: 1474 QRAELEAQVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEARVARLAADGDEARQ 1533

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               A  + LQQ       + +       + A  RD+           L +   +      
Sbjct: 1534 QLAANAEELQQRLDTATQQRAELEAQLARLAADRDEARQQLAANAEELQQRLDTATQQRA 1593

Query: 484  E--AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            E  A +     +     Q+      +++   +   +  + L    V +     +E  Q+L
Sbjct: 1594 ELEARVARLAADGDEARQQLAANAEELQQRLDTATQQRAEL-EARVARLAADRDEARQQL 1652

Query: 542  --CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEI 598
                    + L    +Q  +     A   A+  + RQ     A  L +R    ++Q+ E+
Sbjct: 1653 AANAEELQQRLDTATQQRAELEAQLARLAADRDEARQQLAANAEELQQRLDTATQQRAEL 1712

Query: 599  EKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEAMI 638
            E Q+A++ A G+  +         L   L     Q  ++E + A++
Sbjct: 1713 EAQLARLAADGDEARQQLAANAEELQQRLDTATQQRAELEVEMAVL 1758



 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 12/221 (5%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           ++ ++ RL    Q+     +   R        R Q   +   +Q  L      +     E
Sbjct: 597 AEELQQRLDTATQQRAELEARVARLAVDRDEARQQLAANAEELQQRLDTATQQRAE--LE 654

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--C 542
           A +     +     Q+      +++   +   +  + L +          +E  Q+L   
Sbjct: 655 AQVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQLARL-AADRDEARQQLAAN 713

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQ 601
                + L    +Q  +     A   A+  + RQ     A  L +R    ++Q+ E+E Q
Sbjct: 714 AEELQQRLDTATQQRAELEAQVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQ 773

Query: 602 IAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
           +A++ A  +  +         L   L     Q  ++E+Q A
Sbjct: 774 LARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQVA 814



 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 12/221 (5%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            ++ ++ RL    Q+     +   R        R Q   +   +Q  L      +     E
Sbjct: 1093 AEELQQRLDTATQQRAELEAQVARLAADGDEARQQLAANAEELQQRLDTATQQRAE--LE 1150

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--C 542
            A +     +     Q+      +++   +   +  + L +          +E  Q+L   
Sbjct: 1151 ARVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQLARL-AADRDEARQQLAAN 1209

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQ 601
                 + L    +Q  +     A   A+  + RQ     A  L +R    ++Q+ E+E Q
Sbjct: 1210 AEELQQRLDTATQQRAELEAQVARLAADGDEARQQLAANAEELQQRLDTATQQRAELEAQ 1269

Query: 602  IAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
            +A++ A  +  +         L   L     Q  ++E+Q A
Sbjct: 1270 LARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQVA 1310



 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 12/221 (5%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           ++ ++ RL    Q+     +   R        R Q   +   +Q  L      +     E
Sbjct: 675 AEELQQRLDTATQQRAELEAQLARLAADRDEARQQLAANAEELQQRLDTATQQRAE--LE 732

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--C 542
           A +     +     Q+      +++   +   +  + L +          +E  Q+L   
Sbjct: 733 AQVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQLARL-AADRDEARQQLAAN 791

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQ 601
                + L    +Q  +     A   A+  + RQ     A  L +R    ++Q+ E+E Q
Sbjct: 792 AEELQQRLDTATQQRAELEAQVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQ 851

Query: 602 IAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
           +A++ A  +  +         L   L     Q  ++E+Q A
Sbjct: 852 VARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQVA 892



 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 98/337 (29%), Gaps = 31/337 (9%)

Query: 319 LCFDGDDPGLRAAYKAIDLVLCH-----LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
           L  D D+   + A  A +L                    L+   D             ++
Sbjct: 448 LAADRDEARQQLAANAEELQQRLDTATQQRAELEARVARLAADGDEARQQLAANAEELQQ 507

Query: 374 LIVESLPLV---DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
            +  +       +    R   N            +   +      +    R    Q +  
Sbjct: 508 RLDTATQQRAELEAQVARLAANAEELQQRLDTATQQRAELEARVARLAADRDEARQQLAA 567

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             ++L Q+  T          + AR        Q+ + ++  +          EA +   
Sbjct: 568 NAEELQQRLDTATQQRAELEAQVARLAANAEELQQRLDTATQQRAE------LEARVARL 621

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--CERGFGE 548
            ++     Q+      +++   +   +  + L +          +E  Q+L        +
Sbjct: 622 AVDRDEARQQLAANAEELQQRLDTATQQRAELEAQVARL-AADRDEARQQLAANAEELQQ 680

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTA 607
            L    +Q  +     A   A+  + RQ     A  L +R    ++Q+ E+E Q+A++ A
Sbjct: 681 RLDTATQQRAELEAQLARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQVARLAA 740

Query: 608 KGEAEK------TAILISILH-------EVHIQIHQI 631
             +  +         L   L        E+  Q+ ++
Sbjct: 741 DRDEARQQLAANAEELQQRLDTATQQRAELEAQLARL 777



 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 4/120 (3%)

Query: 523 FSDFVEQKYFLPEEIHQRL--CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ- 579
               V +     +E  Q+L        + L    +Q  +     A   A+  + RQ    
Sbjct: 218 LEARVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEARVARLAADRDEARQQLAA 277

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            A  L +R    ++Q+ E+E Q+A++ A G+  +   L +   E+  ++     Q A +E
Sbjct: 278 NAEELQQRLDTATQQRAELEAQVARLAADGDEAR-QQLAANAEELQQRLDTATQQRAELE 336



 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 76/225 (33%), Gaps = 16/225 (7%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    Q +    ++L Q+  T          + AR        Q+ + ++  +       
Sbjct: 1383 RDEARQQLAANAEELQQRLDTATQQRAELEAQVARLAANAEELQQRLDTATQQRAE---- 1438

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
               EA +     +     Q+      +++   +   +  + L +          +E  Q+
Sbjct: 1439 --LEARVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQVARL-AADRDEARQQ 1495

Query: 541  L--CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597
            L        + L    +Q  +     A   A+  + RQ     A  L +R    ++Q+ E
Sbjct: 1496 LAANAEELQQRLDTATQQRAELEARVARLAADGDEARQQLAANAEELQQRLDTATQQRAE 1555

Query: 598  IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
            +E Q+A++ A  +  +         L   L     Q  ++E++ A
Sbjct: 1556 LEAQLARLAADRDEARQQLAANAEELQQRLDTATQQRAELEARVA 1600


>gi|284993406|ref|YP_003411961.1| replicative DNA helicase [Geodermatophilus obscurus DSM 43160]
 gi|284066652|gb|ADB77590.1| replicative DNA helicase [Geodermatophilus obscurus DSM 43160]
          Length = 871

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 58/174 (33%), Gaps = 17/174 (9%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
            R   ++    +   +    E ++L  ++     + +  + LA + +     Q ++  + 
Sbjct: 8   SRPTPTAPQYDRQPPQDVAAEQSVLGGMLLSKDAIADVVEVLAGLDFYRPAHQVIFDCIL 67

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
             +   +      +   L      + L ++   V    L  +T  A       GY  A+ 
Sbjct: 68  DLYGRGEPADAITVAAELNRT---DQLSKMGGAVYLHTLIQSTPTA----ANAGYYAAIV 120

Query: 584 LYKRFRLLSRQKEEIEKQIAQ-----VTAKGE-AEKTAILISILHEV-HIQIHQ 630
                + + R+  E   ++ Q        KG+  +        +++V   ++ +
Sbjct: 121 A---EQAVLRRLVEAGTRVVQLGYGAAGGKGDVDDIVDRAQQEIYDVTEKRMSE 171


>gi|226312493|ref|YP_002772387.1| replicative DNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226314973|ref|YP_002774869.1| replicative DNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226095441|dbj|BAH43883.1| probable replicative DNA helicase [Brevibacillus brevis NBRC
           100599]
 gi|226097923|dbj|BAH46365.1| probable replicative DNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 459

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 7/150 (4%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +        E A+L  +   P ++ +   EL  + +     Q L+  +   + +      
Sbjct: 5   QEMPHSEEAEKAVLGAIFCKPPVITKVIDELTAMDFYRTRHQILYQGMADLYEKGDPIDL 64

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSR 593
             I   L E+      K LD       +    +     +    Y    L   +R +L+  
Sbjct: 65  VTITSHLQEK------KALDNVGGVPYITELVSYTPTAENIDYYAGIVLHKARRRKLIEI 118

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHE 623
             +  +  +          ++  L + + E
Sbjct: 119 NYQVYKDSLNNENVDEVLAQSEKLAAEIRE 148


>gi|312141930|ref|YP_004009266.1| replicative DNA helicase dnab [Rhodococcus equi 103S]
 gi|311891269|emb|CBH50590.1| replicative DNA helicase DnaB [Rhodococcus equi 103S]
          Length = 432

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 15/151 (9%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E ++L  ++     + +  + L    +     Q ++  +   +   +   P  +   L 
Sbjct: 3   AEQSVLGGMLLSKDAIADVLEVLRPGDFYRPAHQSVYDAILDLYSRGEPADPVTVSAELD 62

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            RG      +L R      L + T           Y + +A     + + R+  +   +I
Sbjct: 63  RRG------ELRRIGGAPYLVTLTQTVPTAANAAYYAEIVA----EKSILRRLVDAGTRI 112

Query: 603 AQVTAKGE-----AEKTAILISILHEVHIQI 628
            Q    G      AE      + + EV  + 
Sbjct: 113 VQYGYAGSDGQDVAEVVDRAQAEIFEVTERR 143


>gi|302668683|ref|YP_003833131.1| hypothetical protein bpr_IV185 [Butyrivibrio proteoclasticus B316]
 gi|302397647|gb|ADL36549.1| hypothetical protein bpr_IV185 [Butyrivibrio proteoclasticus B316]
          Length = 393

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 102/337 (30%), Gaps = 28/337 (8%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102
           CPF   K   F  N  KG  +CF+C    D  S+ +A  G S  ++   +     +P   
Sbjct: 31  CPFCGGKR--FGMNIKKGIGHCFNCCETADSASYYAAHTGLSLNDARNDIRKRLNIPDEK 88

Query: 103 VDPKIE--KKEKIQTDL--IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158
            +       KE+ Q +L  I + +     F   L     ++ +  L  RG     I    
Sbjct: 89  GNLPERMVYKEETQEELAPIEVRDRTYRAFLEELI--LSQKNYDNLRARGFTDDDIVAKG 146

Query: 159 LGYAPDSRYSLREH-LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217
               P +  +  E   R+       +           +  ++ R    +I P      Q+
Sbjct: 147 YKTFPSAENTSFEDLCRRLLNKGCTLAGVPGFYKNTKNEWTFVRLTPGIIIPQIGIHNQI 206

Query: 218 IAFGGRTLSK---------GESVKYLNSPETILFHKGKNLYNFFGALNYL-QKSIRKDVR 267
             F  R                + + +S                 A +++  +  ++   
Sbjct: 207 EGFQIRKDDDLRREYDGELEAKIVWFSSKGKSHGTGPHV--TVHIATDFIYYRDKKQYEP 264

Query: 268 RNSSSFIILVEGYMDVLSLCQ-----AGVQNVVSSLGTALTEYQLRLLWKLSPR-IVLCF 321
               + + L EG M            A +  V         +  L  L     + + + F
Sbjct: 265 VLHGNKVTLTEGGMKADLCACLLDNHASLIAVQGVHALNPLKEALIALKPFGLKTVNVAF 324

Query: 322 DGDDPGLRAAYKAIDLVLCHLIP-GNRVNFVLLSRGE 357
           D D    +   +A++ V   +   G     ++    +
Sbjct: 325 DMDYLTNKNVKEAMEKVTALIKELGLEYENLMNWEYK 361


>gi|298245092|ref|ZP_06968898.1| replicative DNA helicase [Ktedonobacter racemifer DSM 44963]
 gi|297552573|gb|EFH86438.1| replicative DNA helicase [Ktedonobacter racemifer DSM 44963]
          Length = 448

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 10/147 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L       EAALL +LI  P  +      L+   +       ++  + + + +Q+    
Sbjct: 4   RLPPSNLEAEAALLGSLIIDPEAVGLIADVLSPDDFYRQAHSMIYEAILTLYEQQEPADL 63

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L  RG      +LD    D  + S           + Y + +A   +     R+
Sbjct: 64  VTLSDELIRRG------KLDEVGGDDYITSLVNTVPTSGNVEYYGRIVARTAQA----RR 113

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISIL 621
                 QIA    + + + T     ++
Sbjct: 114 LIHAAGQIAATAYEDDEQATEKAEQLI 140


>gi|17561652|ref|NP_505094.1| MYOsin heavy chain structural genes family member (myo-5)
            [Caenorhabditis elegans]
 gi|10864419|gb|AAG24132.1| Hypothetical protein F58G4.1 [Caenorhabditis elegans]
          Length = 1974

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 93/245 (37%), Gaps = 22/245 (8%)

Query: 400  ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
            ++A+LE  + N  + + D++ +       + +++Q  +      S      KK    +  
Sbjct: 921  QKADLEKQMANMNDQLCDEEEKNAALTKQKKKIEQDNEGLKKTVSDLETTIKKQESEKQA 980

Query: 460  KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
            K    R +Q  +           +E        +   + ++  +++       N L K  
Sbjct: 981  KDHQIRSLQDEIQSQDEVISKLNKEKK------HQEEVNRKLLEDIQAEEDKVNHLNKTK 1034

Query: 520  SFLFSDFVEQKY---------FLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTE 568
            + L S   E +             E+  +++        EL+++L+R   +        +
Sbjct: 1035 AKLESTLDELEDTLEREKRGRQDCEKQRRKVEGELKIAQELIEELNRHKHEQEQVIKKKD 1094

Query: 569  ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI--LHEVHI 626
              +  ++   +   +L  +   L RQ +E+  +I ++  + +AE+ +   +    +E+ +
Sbjct: 1095 IELSSIQSRLEDEQSLVAK---LQRQIKELLARIQELEEELDAERNSRSKAEKARNEMQM 1151

Query: 627  QIHQI 631
            ++ ++
Sbjct: 1152 ELEEL 1156



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 68/231 (29%), Gaps = 9/231 (3%)

Query: 407  HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
                  +      LR  ++ A+ +   QL      +        +KN + R+     Q  
Sbjct: 1189 EDAAINSETSMAALRKKHNDAVAELSDQLDT---IQKMRGKLEREKNDKQREVDELQQSA 1245

Query: 467  MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
               +  +    +     EA L    +      +   +        +NE Q L   L    
Sbjct: 1246 DVEAKQRQNCERMAKQLEAQLTDMTLKSDEQARLIQELTMGKNKVHNENQDLNRQLEDAE 1305

Query: 527  VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             +       +  Q          L Q  R+ +      +  +      R+  ++      
Sbjct: 1306 AQLCALNRIKQQQHSQLEELKRTLDQETRERQSLHSQVSNYQLECEQFRESLEEEQDA-- 1363

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIESQ 634
                + RQ  +   +I Q  AK E E   +   L     ++  ++ +++ Q
Sbjct: 1364 -KTDVQRQLSKANSEIQQWRAKFEGEGVSRAEELEETRRKLTHKVQEMQEQ 1413


>gi|72383410|ref|YP_292765.1| ATPase [Prochlorococcus marinus str. NATL2A]
 gi|72003260|gb|AAZ59062.1| ATPase [Prochlorococcus marinus str. NATL2A]
          Length = 931

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 63/189 (33%), Gaps = 13/189 (6%)

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL--LTLINHPAILQEQYQELA---- 506
           N R +        L  S  +   L +   +    ++    LI    +      +      
Sbjct: 389 NRRFQQVSIKEPSLDLSLEILKGLKENYEVHHGVIITDEALITANRLAYRYISDRCLPDK 448

Query: 507 DIRYDNNELQKLW--SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
            I   +    ++   S L    +E+K      +   +        L+ ++       L  
Sbjct: 449 AIDLIDEASAQVRIESALKPKIIEEKESQVNHLESSIINADKDTTLETINNLQEKKELLL 508

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHE 623
                 + +++Q +Q  +      + L    +E++  I +V   G+ E+   L    L++
Sbjct: 509 F----ELAEIKQKWQDQIDKSAELQELKISLKELKNLIREVEISGDMEEVERLKYDQLYQ 564

Query: 624 VHIQIHQIE 632
           +  +I +IE
Sbjct: 565 LQERIEEIE 573


>gi|53803929|ref|YP_114174.1| replicative DNA helicase [Methylococcus capsulatus str. Bath]
 gi|53757690|gb|AAU91981.1| replicative DNA helicase [Methylococcus capsulatus str. Bath]
          Length = 461

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 6/166 (3%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
           R +   +   K+       E A+L  L+            + +  +   + + ++  +  
Sbjct: 6   RSIDKRVEALKIPPHSIQAEQAVLGGLLLDNQTWDVVADRIVEEDFYRRDHRLIFRAIRQ 65

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
               Q  F    + + L + G      +L+     A L     E         Y   +  
Sbjct: 66  LSERQAPFDVVTLSEVLEKTG------ELEEAGGLAYLAVLARETPSAANIAAYADIVRE 119

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               R L     EI     Q   +G ++        + ++  Q  +
Sbjct: 120 RAVLRQLIHVGTEIADSAYQPEGRGMSDLLEQAEQRVFQIADQRQR 165


>gi|326202844|ref|ZP_08192711.1| replicative DNA helicase [Clostridium papyrosolvens DSM 2782]
 gi|325986921|gb|EGD47750.1| replicative DNA helicase [Clostridium papyrosolvens DSM 2782]
          Length = 446

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 58/161 (36%), Gaps = 10/161 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           G++  +    E ++L +++    ++    + L    +   + ++++  +   F   +   
Sbjct: 7   GRIPPQSLEAEQSVLGSMLIDKEVVPVVMEILKPEDFYRPDHKEIYDVIIELFDRAQPID 66

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + +RL   G  EL+  L+       L +  TE       + Y + +      + L R
Sbjct: 67  LITVSERLKLHGKLELVGGLE------YLTNIATEVPTTANVKHYAKIVE----EKALLR 116

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +  +    I  +      E + IL      +   + +  SQ
Sbjct: 117 KLIKASTDIVDLGYNASEEVSYILDKAEQNIFDILQKRSSQ 157


>gi|297564960|ref|YP_003683932.1| phage/plasmid primase, P4 family [Meiothermus silvanus DSM 9946]
 gi|296849409|gb|ADH62424.1| phage/plasmid primase, P4 family [Meiothermus silvanus DSM 9946]
          Length = 882

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 47  DEKTPSFHCNDSKG--FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-VPLPVV 103
            +  PS     ++G  F+        G+    L    G S  E+ + L A AG V LP  
Sbjct: 42  GDTHPSLSLFQARGMWFWKDHGSGESGNAFHLLLRA-GMSKEEAAELLKARAGEVALPEA 100

Query: 104 DPKIEKKE 111
             +  +++
Sbjct: 101 YFRQAERD 108


>gi|291412099|ref|XP_002722322.1| PREDICTED: periplakin, partial [Oryctolagus cuniculus]
          Length = 1693

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 47/132 (35%), Gaps = 10/132 (7%)

Query: 513  NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE---- 568
             E++ L + L  +  +Q     E   Q    R   E L Q+  +V    +     E    
Sbjct: 1243 EEVESLRAKLSEEQKKQVDLDRERAAQEEKIRQKEEELSQVTERVVQQEVVQYEEEPGLR 1302

Query: 569  ----ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
                A    +    +Q   L    R L +++ E+E+Q+ ++    E +           +
Sbjct: 1303 AEVSAFTESIDAELRQIDKLRAELRRLQQRRGELERQLQELER--ERQARREAEQEAQRL 1360

Query: 625  HIQIHQIESQEA 636
              ++  +E + A
Sbjct: 1361 QQRLAVLEREAA 1372


>gi|332259764|ref|XP_003278953.1| PREDICTED: rootletin-like [Nomascus leucogenys]
          Length = 802

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 72/221 (32%), Gaps = 11/221 (4%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  R   S+ +  R ++  ++   E        +       ++  + +      +     
Sbjct: 213 ETERSLLSEELS-RARRALERVRQEAQSQQERAQATISATTEELKALQAQFEDAITAHQR 271

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPE 535
              +L E +L         + +E  +  A +      L  L   L    +  E  +   +
Sbjct: 272 DTTALHE-SLRDLAAERGDVEREAERLRAQLTVAQEGLAALRQELQGVEESREGLHREAQ 330

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN--IVDVRQGYQQALALYKRFRLLSR 593
           E  Q L +    + +  L      A +  A  E         +  Q+ L L +    L +
Sbjct: 331 EARQALSDEAREKDVLLLFNSELRATICRAEQEKASFKRSKEEKEQKLLVLEEAQAALQQ 390

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +   +  ++ ++    E  +       L E+H Q+  ++++
Sbjct: 391 EASALRARLWELEQAREDAR-----QELRELHRQVRTLKAE 426


>gi|317146977|ref|XP_001821797.2| dynactin [Aspergillus oryzae RIB40]
          Length = 1356

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 77/233 (33%), Gaps = 15/233 (6%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R   S A+   L++L  K            ++  +  +     +   +S + K +   +P
Sbjct: 299 RQAQSTALSRELEELKTKLRV-MEKKRTEDREKLKALETLQQERDKFESIIQKLQAKYQP 357

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E + L   +       E+ + +        E+  L   +  +  +      E +  R
Sbjct: 358 QQLEISDLRKKLRESEAQLEEIERIQAEHDSILEMATLDREMAEETADAFRHEVETLKLR 417

Query: 541 LCE--------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-YKRFRLL 591
           + E        R   E L Q       +       E     +R+   +   +  ++   L
Sbjct: 418 VEELQLEAEVLREENEELGQTMSPEEKSSHGWLQMERTNERLREALIRLRDMTQQQESEL 477

Query: 592 SRQKEEIEKQIAQVTA-----KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             Q +E+++ + +  +     +   EK  +  + + ++  Q+      E MIE
Sbjct: 478 KDQIKELQQDLEEYESIKSQYESTKEKLLVAENNVEDLKQQLETALGAEEMIE 530


>gi|303249182|ref|ZP_07335420.1| replicative DNA helicase [Desulfovibrio fructosovorans JJ]
 gi|302489405|gb|EFL49354.1| replicative DNA helicase [Desulfovibrio fructosovorans JJ]
          Length = 484

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/213 (9%), Positives = 58/213 (27%), Gaps = 31/213 (14%)

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVK------GKLSKKPSLREAALLLTLINHPAILQEQ 501
           R   ++ +     G  + L   +L +       K+  +    E A+L  ++   ++L   
Sbjct: 5   RKKPRSQKSSGLAGSGEPLTGQALERVSADVLKKIPPQNLEAEQAVLGGVLLKNSVLYNL 64

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLK 551
              + +  + +   + ++  +     +        + + L   G            EL  
Sbjct: 65  VDLVGEDDFYSPAHRLIFQSILGLSAKNAPIDLVSLAEALRAAGKLEEVGGPTYLAELTA 124

Query: 552 QLDRQVRDAGLWSATTEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
                           E  +             +     +    L  + E+    IA   
Sbjct: 125 STVSAANALHHAGIVREKAVQRKLITTALDIITRCYDGGQETETLLDESEQAIFSIADAR 184

Query: 607 AK----GEAEKTAILISILHEVHIQIHQIESQE 635
           +        +    +   + +      ++E++E
Sbjct: 185 STRGLHSSKDLVTRVFEQIEK------RMENKE 211


>gi|238798494|ref|ZP_04641973.1| Replicative DNA helicase [Yersinia mollaretii ATCC 43969]
 gi|238717656|gb|EEQ09493.1| Replicative DNA helicase [Yersinia mollaretii ATCC 43969]
          Length = 468

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
            +             +   KL       E ++L  L+          + +A   + +   
Sbjct: 3   AKKPTNKMTEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASNDFFSRPH 62

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           +++++ +       K      + + L ++G    L  +      A L   T  A  +   
Sbjct: 63  RRIFTEMQRLLENSKPIDLITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAY 119

Query: 576 QGYQQALALYKRFRLLSRQKEEI 598
               +  A+ +    ++ +  + 
Sbjct: 120 ADIVRERAVVREMISVANEIADA 142


>gi|221505145|gb|EEE30799.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 3076

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 93/272 (34%), Gaps = 17/272 (6%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI--NHIKDQKLRYYYSQA 427
                 +            RE +       ++    E+     +  N  K +  R  ++Q 
Sbjct: 1902 QLRVRVWREKFWTLKRLDREKDRVIGEQVEQLRASEVLFLQMVGENETKLEHEREVHAQE 1961

Query: 428  IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            +     +L      +        +++A   +        +  +  +   + +    E A 
Sbjct: 1962 LARIAAELAG---LQTVCERERAERDAERAEVDVQHSAQLAEARARLADALREKAEEGAA 2018

Query: 488  LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
            L   +        + QE           + L +       E      E + + L E+   
Sbjct: 2019 LRRALQEAEANLRRQQEREAEA-RRKHAEGLAAE--RGHREAARDETERLRKELEEKC-A 2074

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             LL++++ +  +     +  +    +  +  +Q   L +  +   R+ EE+E+++A    
Sbjct: 2075 ALLREVEERGEERRRRESERDVERAEHAEKQRQICELRENEKKRQREVEELERRVA---- 2130

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                E+ A   ++L ++  Q  Q+++Q++++E
Sbjct: 2131 ----EQRAREAALLRQIENQEDQLQNQQSLLE 2158


>gi|261419034|ref|YP_003252716.1| ATP-dependent chaperone ClpB [Geobacillus sp. Y412MC61]
 gi|319765851|ref|YP_004131352.1| ATP-dependent chaperone ClpB [Geobacillus sp. Y412MC52]
 gi|261375491|gb|ACX78234.1| ATP-dependent chaperone ClpB [Geobacillus sp. Y412MC61]
 gi|317110717|gb|ADU93209.1| ATP-dependent chaperone ClpB [Geobacillus sp. Y412MC52]
          Length = 864

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 77/205 (37%), Gaps = 10/205 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI +     R +++          +  +++    + ++     + + AL+   +   
Sbjct: 319 YRQYIEKDPALERRFQQVLVQEPSVEDTISILRGLKERYEVHHGVKIHDRALVAAAVLSD 378

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +     + + + S   E    +   +   + E    +   +  R
Sbjct: 379 RYISDRFLPDKAIDLVDEACATIRTEMESMPSELDEVMRRVMQLEIEEAALSKETDEASR 438

Query: 556 Q---VRDAGLWSATTEANIVDVR-QGYQQALALYKRFR-LLSRQKEEIEKQIAQVTAKGE 610
           +        L     +AN +  + Q  ++AL   +R R  L R K E+E    +   + +
Sbjct: 439 ERLVALQKELADLREKANAMKAQWQKEKEALDRVRRLREALERAKRELE----EAENEYD 494

Query: 611 AEKTAIL-ISILHEVHIQIHQIESQ 634
             K A L    + ++  Q+ Q+E +
Sbjct: 495 LNKAAELRHGRIPQLEKQLKQLEQE 519


>gi|183217337|gb|ACC59256.1| unknown [Streptococcus pneumoniae]
          Length = 361

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 47/117 (40%), Gaps = 18/117 (15%)

Query: 8   IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
           I++    I I ++  +  + + +  ++  +       P HD    SF    +   +  FS
Sbjct: 3   IEECKQ-ISILDVASRLGISFKQVSSSVYEH------PEHD----SFRIFSNTNTFKWFS 51

Query: 67  CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
             ++GD + F+  + G SF +++  L+            +  ++++ +     L  +
Sbjct: 52  RDIQGDVIDFVRLVKGISFKKALAFLSE------EPFQKEAVQEKRERPFYYPLNRI 102


>gi|294673591|ref|YP_003574207.1| hypothetical protein PRU_0854 [Prevotella ruminicola 23]
 gi|294472290|gb|ADE81679.1| conserved domain protein [Prevotella ruminicola 23]
          Length = 922

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 54/395 (13%), Positives = 112/395 (28%), Gaps = 49/395 (12%)

Query: 47  DEKTPSFHCNDSKG---FYY--CFSCHVK-G--DHLSFLSALLGCS---FIESVQRLAAI 95
           +E TPS       G   +++   F      G    +       G +   F  +VQ LA  
Sbjct: 42  NEHTPSACVYPPTGNVAYWHVKDFGMGEGEGYFSPIDLYMWDRGYTQAQFAIAVQELAEQ 101

Query: 96  AGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIE 155
            GV   +     + +   +  L                     +        G  +  + 
Sbjct: 102 YGVQDELKQGANKPEVIKRPAL----------------PCEIGKPVRVTYGDGFTAADLS 145

Query: 156 MFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRG 215
           ++      +                     +           +Y  +    ++      G
Sbjct: 146 VWGPCVKAE-----HLMELGWRTVAAITRTSDGTTTIKKPTDTYPIYAQVCMYQ--DDDG 198

Query: 216 QVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFII 275
            + +F      K  +  +  S   I       L+          +   ++        ++
Sbjct: 199 NMQSFIKVYEPKNFNKSFRFS--IIGHKPQHYLFGL-----AALRRKYEERGEVKLDEVV 251

Query: 276 LVEGYMDVLSLCQAGVQNVVSSLGTALTEY-QLRLLWKLSPRIVLCFDGDDPGLRAAYKA 334
           +V G  D  +    G Q V  S  T   +   L+LL K + R+V   D DD G++A  + 
Sbjct: 252 IVSGGSDAANCLSLGYQPVWLSSETETLQESDLKLLMKYAKRVVNIPDIDDTGMKAGRRL 311

Query: 335 IDLVLCHLIPGNRVNFVLLSRG------EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKR 388
              +          + + L         +D   +I+     A  + ++          +R
Sbjct: 312 ALSLPTIHTAWMTASDMHLLHDNRGRYRKDLKDYIQLNPHRAAMRRLISRAQCAQYWIER 371

Query: 389 ETENRSFNTPDERAELEIHLK-NCINHIKDQKLRY 422
             ++ + +     A L  +L  N    +KD   + 
Sbjct: 372 HDKDGNISYSISAARLNYYLALNGYYTLKDDAHKD 406


>gi|39938499|ref|NP_950265.1| replicative DNA helicase [Onion yellows phytoplasma OY-M]
 gi|39721608|dbj|BAD04098.1| replicative DNA helicase [Onion yellows phytoplasma OY-M]
          Length = 447

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 10/131 (7%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K +      E ALL  L+ +P  +      +A+  + ++  Q ++  + +     K   
Sbjct: 5   SKNTPSSPEAERALLGALLLNPEKIAFTLDMIAETDFYSSHHQHIFRAMKTLHETNKQID 64

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +   L      + +  +D     + L  +T         + Y   +    +   L R
Sbjct: 65  YSSVSAILDNEKLLQQIGNIDYLNELSDLMPST------QHIETYIDLI----KETALKR 114

Query: 594 QKEEIEKQIAQ 604
           +  E    +AQ
Sbjct: 115 EIIETVTSLAQ 125


>gi|222053891|ref|YP_002536253.1| ATP-dependent chaperone ClpB [Geobacter sp. FRC-32]
 gi|221563180|gb|ACM19152.1| ATP-dependent chaperone ClpB [Geobacter sp. FRC-32]
          Length = 866

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 73/201 (36%), Gaps = 2/201 (0%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++K+I + +   R +++          +  +++    + +      ++++A++       
Sbjct: 321 YRKHIEKDAALERRFQQVYAGEPSVEDTIAILRGLKERYENYHSVRIKDSAIIAAATLSD 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-GELLKQLD 554
             + +++     I   +    +L   + S   E      + I   + ++    E      
Sbjct: 381 RYITDRFLPDKAIDLIDEAASRLRIEIDSMPTEIDEVERKVIQLEIEKQALLREQDPHAK 440

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            ++R          ++   ++  +QQ  +L      L +Q EE ++Q  +   +G+   T
Sbjct: 441 ERLRKISDELEELRSSSATLKSQWQQEKSLLTSISDLKKQLEEKKEQAKKSEREGDLALT 500

Query: 615 AIL-ISILHEVHIQIHQIESQ 634
           A L    +  +   I    ++
Sbjct: 501 AKLRYGEIPAIEKDIADKSNE 521


>gi|188995072|ref|YP_001929324.1| ClpB protein [Porphyromonas gingivalis ATCC 33277]
 gi|188594752|dbj|BAG33727.1| ClpB protein [Porphyromonas gingivalis ATCC 33277]
          Length = 863

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 73/213 (34%), Gaps = 12/213 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++KY  +     R ++        +  S  +++    K +   K  +++ A++  + ++H
Sbjct: 317 YRKYFEKDKALERRFQMVMVDEPDELSSISILRGLKEKYENHHKVRIKDDAIIAAVKLSH 376

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I +    +   I   +    +L   + S   E            +          +  
Sbjct: 377 RYITERFLPD-KAIDLMDEAAARLRMEVDSLPEELDEISRRIKQLEIEREAIKRENDEEK 435

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            Q  D  +     +      +  +Q       + + L    EE++ Q  +   +G+  + 
Sbjct: 436 VQFLDREIAELKEKEASEKAQ--WQNEKDRINQIQQLKIDIEELKFQADRAEREGDYGRV 493

Query: 615 AILI--------SILHEVHIQIHQIESQEAMIE 639
           A +         + +  +  Q+H+++   +MI+
Sbjct: 494 AEIRYGLIKQKETEIDTIQQQLHELQRGGSMIK 526



 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 21/291 (7%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            R       E L  + +  +DM              +    +   +      I       
Sbjct: 219 YRIVRGDVPENLRNKQIFSLDMGALIAGAKYKGEFEERLKAVVNEVTGAEGEI------I 272

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            +   I   +     +   + +   +        R     +    +    K K       
Sbjct: 273 LFIDEIHTLVGAGKSEGAMDAANILKPALARGELRAIGATTLDEYRKYFEKDKA------ 326

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLW---SFLFSDFVEQKYFLPEEIHQ 539
            E    + +++ P  L      L  ++       K+      + +       ++ E    
Sbjct: 327 LERRFQMVMVDEPDELSSI-SILRGLKEKYENHHKVRIKDDAIIAAVKLSHRYITERFLP 385

Query: 540 RLCERGFGELLKQLDRQV--RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                   E   +L  +V      L   +     +++ +   +     ++ + L R+  E
Sbjct: 386 DKAIDLMDEAAARLRMEVDSLPEELDEISRRIKQLEIEREAIKRENDEEKVQFLDREIAE 445

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           ++++  + + K + +     I+ + ++ I I +++ Q    E  G   GR+
Sbjct: 446 LKEK--EASEKAQWQNEKDRINQIQQLKIDIEELKFQADRAEREGDY-GRV 493


>gi|148243496|ref|YP_001228653.1| replicative DNA helicase [Synechococcus sp. RCC307]
 gi|147851806|emb|CAK29300.1| Replicative DNA helicase [Synechococcus sp. RCC307]
          Length = 474

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/202 (9%), Positives = 58/202 (28%), Gaps = 16/202 (7%)

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
           E                ++   +          ++  +    E  +L  ++  P  +   
Sbjct: 4   ERRNGAMVSVPLNEPERERTRRKDAELFEATPEQIPPQNLEAEEMILGGILLDPDAIGRV 63

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL---KQLDRQVR 558
              L    +     ++++        + K      +   L + G  E +    +L   V 
Sbjct: 64  ADVLQPEAFYTGAHREIFRTALMLHGQGKPTDLTAMVAWLADTGQLEKVGGSSRLSELVD 123

Query: 559 DAGLWSATTEANIVDVRQGYQQALAL---------YKRFRLLSRQKEEIEKQI----AQV 605
                ++  E   + + +  ++ L           + + + + +  +E E++I       
Sbjct: 124 RTLSTASIEEVAKLVMDKHLRRQLIRSGNEVIGLGFDQSKPMDQVLDEAEQKIFAISQSK 183

Query: 606 TAKGEAEKTAILISILHEVHIQ 627
            + G      IL     E+  +
Sbjct: 184 PSLGLTPTAEILTRTFEEIETR 205


>gi|159044916|ref|YP_001533710.1| replicative DNA helicase [Dinoroseobacter shibae DFL 12]
 gi|157912676|gb|ABV94109.1| replicative DNA helicase [Dinoroseobacter shibae DFL 12]
          Length = 506

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 48/168 (28%), Gaps = 12/168 (7%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                +    E  LL  ++ +  +       +    + +   ++++    +   +     
Sbjct: 23  SPGLPQNIEAEQQLLGAILTNNDVFDRVSMIIQPEHFFDPVHRRIYEVAATRIQKNALAS 82

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  +   L +         L      A L      A      + Y Q +        + R
Sbjct: 83  PVTLKAFLEDDPG------LAELGGPAYLVRLAGAAISAFAAKDYAQMIYDL----AIRR 132

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           +  E+ ++I    A+ +          + E    ++ +  Q     GF
Sbjct: 133 ELIELGQEIVSKAAQVDVASEPK--EQIVEAEQALYALGEQGKSDSGF 178


>gi|109465234|ref|XP_227472.4| PREDICTED: cingulin [Rattus norvegicus]
 gi|109467175|ref|XP_001059265.1| PREDICTED: cingulin [Rattus norvegicus]
          Length = 1335

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 74/207 (35%), Gaps = 9/207 (4%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           Q+ +  +           K +  +D     + L +    K ++ ++  LRE  L      
Sbjct: 576 QVKELQLKLKHSQNLDPGKESLLKDLLETRELLEELLEGKQRVEEQLRLRERELTALKGA 635

Query: 494 HPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
               +    QE+  +R     + ++L   +     +      E   ++       EL K+
Sbjct: 636 LKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAAVEAE---RQKMSSLVRELQKE 692

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR----QKEEIEKQIAQVTAK 608
           L+    + G W    + N  ++R   Q+ L L      +      + E +++ + Q  A 
Sbjct: 693 LEETSEETGHWQNMFQKNKEELRAAKQELLQLRMEKEEIEEELGEKMEILQRDLEQARAS 752

Query: 609 -GEAEKTAILISILHEVHIQIHQIESQ 634
             + ++   L   L     ++ +++++
Sbjct: 753 TRDTQQVEELKKELQRTQGELKELQAE 779



 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 100/291 (34%), Gaps = 25/291 (8%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             S +  Y + A +++        D   + E  +   +   +  +            +D  
Sbjct: 1005 QSQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTA 1064

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                  + +  RLQ L Q+   +        ++     ++    +  +       +L   
Sbjct: 1065 RLD--KELLAQRLQGLEQEAENKKRSQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTD 1122

Query: 480  PSLREA----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDF 526
               R       L   L+   +  Q+   +   +   N +L+ +L S          FS  
Sbjct: 1123 RVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGLQKPSASFSQL 1182

Query: 527  VEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
              Q   L E +     E+       ++L+R+V++  +       ++ D +        L 
Sbjct: 1183 ESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQ------LT 1236

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
             R + L RQ +E E++I ++ +  +       +   HEV+ Q+  +I+S E
Sbjct: 1237 LRVKALKRQVDEAEEEIERLDSLRKKA--QRELEEQHEVNEQLQARIKSLE 1285


>gi|34540850|ref|NP_905329.1| clpB protein [Porphyromonas gingivalis W83]
 gi|54035793|sp|Q7MVE7|CLPB_PORGI RecName: Full=Chaperone protein ClpB
 gi|34397164|gb|AAQ66228.1| clpB protein [Porphyromonas gingivalis W83]
          Length = 863

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 73/213 (34%), Gaps = 12/213 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++KY  +     R ++        +  S  +++    K +   K  +++ A++  + ++H
Sbjct: 317 YRKYFEKDKALERRFQMVMVDEPDELSSISILRGLKEKYENHHKVRIKDDAIIAAVKLSH 376

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I +    +   I   +    +L   + S   E            +          +  
Sbjct: 377 RYITERFLPD-KAIDLMDEAAARLRMEVDSLPEELDEISRRIKQLEIEREAIKRENDEEK 435

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            Q  D  +     +      +  +Q       + + L    EE++ Q  +   +G+  + 
Sbjct: 436 VQFLDREIAELKEKEASEKAQ--WQNEKDRINQIQQLKIDIEELKFQADRAEREGDYGRV 493

Query: 615 AILI--------SILHEVHIQIHQIESQEAMIE 639
           A +         + +  +  Q+H+++   +MI+
Sbjct: 494 AEIRYGLIKQKETEIDTIQQQLHELQRGGSMIK 526



 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 21/291 (7%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            R       E L  + +  +DM              +    +   +      I       
Sbjct: 219 YRIVRGDVPENLRNKQIFSLDMGALIAGAKYKGEFEERLKAVVNEVTGAEGEI------I 272

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            +   I   +     +   + +   +        R     +    +    K K       
Sbjct: 273 LFIDEIHTLVGAGKSEGAMDAANILKPALARGELRAIGATTLDEYRKYFEKDKA------ 326

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLW---SFLFSDFVEQKYFLPEEIHQ 539
            E    + +++ P  L      L  ++       K+      + +       ++ E    
Sbjct: 327 LERRFQMVMVDEPDELSSI-SILRGLKEKYENHHKVRIKDDAIIAAVKLSHRYITERFLP 385

Query: 540 RLCERGFGELLKQLDRQV--RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                   E   +L  +V      L   +     +++ +   +     ++ + L R+  E
Sbjct: 386 DKAIDLMDEAAARLRMEVDSLPEELDEISRRIKQLEIEREAIKRENDEEKVQFLDREIAE 445

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           ++++  + + K + +     I+ + ++ I I +++ Q    E  G   GR+
Sbjct: 446 LKEK--EASEKAQWQNEKDRINQIQQLKIDIEELKFQADRAEREGDY-GRV 493


>gi|172036856|ref|YP_001803357.1| ATP-dependent Clp protease ATP-binding subunit [Cyanothece sp. ATCC
           51142]
 gi|171698310|gb|ACB51291.1| ATP-dependent Clp protease, ATP-binding subunit [Cyanothece sp.
           ATCC 51142]
          Length = 872

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 77/206 (37%), Gaps = 14/206 (6%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R +++   +      +  +++    + ++     + + AL+   +   
Sbjct: 321 YRKYIEKDAALERRFQEVLVNEPNVVDTISILRGLKERYEVHHGVKIADTALVAAAMLSN 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      + +   +      +   Q+ R
Sbjct: 381 RYISDRFLPDKAIDLVDESAAKLKMEITSKPEELDEVDRKILQLEMERLSLQKEEDQVSR 440

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------QIAQVTAK 608
           +           E  + D+++   Q  A ++  + +  Q  E+++       +I Q    
Sbjct: 441 E------RLEKLEKELADLKEEQSQLNAQWQAEKEVIDQIRELKETIDQVNLEIQQAERD 494

Query: 609 GEAEKTAIL-ISILHEVHIQIHQIES 633
            +  K A L    L ++  Q+ ++ES
Sbjct: 495 YDLNKAAELRYGKLTDLQRQVKELES 520


>gi|301613667|ref|XP_002936330.1| PREDICTED: dynactin subunit 1 [Xenopus (Silurana) tropicalis]
          Length = 1420

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 118/361 (32%), Gaps = 36/361 (9%)

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFD---GDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            V+ L       +   L      +    +         +A  K ++     L        
Sbjct: 343 PVAPLPGPGPTKEEENLRAQVKDLDEKLETLKMKRAEDKAKLKELEKSKLQLEQLQEWKS 402

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +  +  D    ++   K A E L  +   + +M    +    +    +   E    L+ 
Sbjct: 403 KMQEQQADVQRQLKEAKKEAKEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQ 462

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +KD+           + L+   + +  E    G     ++    Q       ++ +
Sbjct: 463 EVDTLKDKV----------EELKIDLEIFKHEIEEKGSDGAASSYQVKQLEEQNARLKEA 512

Query: 471 LVKGKLSKKPSLREAALLLTLIN----HPAILQEQYQEL-ADIRYDNNELQKLWSFLFSD 525
           LV+ +       +E   +   +         L++Q ++L  +       + +L   + + 
Sbjct: 513 LVRMRDLSASEKQEHVKVQKQMEKKNTELDTLRQQKEKLQEEASLMEKTIDELKEQVDAA 572

Query: 526 FVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                    EE+ + L ER     E +++L   V D    +   +    + R+     L 
Sbjct: 573 LGA------EEMVETLTERNLDLEEKVRELRETVSDLEAINEMNDELQENARET---ELE 623

Query: 584 LYKRFRLLSRQKEEIEKQIAQV-TAKGEAE----KTAILISILHEVHIQIHQIESQEAMI 638
           L ++  +   +  E EK++        + +    K   L + L EV+ ++     QEA +
Sbjct: 624 LREQLDMAGARVREAEKRVEAAQETVADYQQTIKKYRDLTAHLQEVNRELR--NQQEASV 681

Query: 639 E 639
           E
Sbjct: 682 E 682


>gi|238496759|ref|XP_002379615.1| dynactin, putative [Aspergillus flavus NRRL3357]
 gi|220694495|gb|EED50839.1| dynactin, putative [Aspergillus flavus NRRL3357]
          Length = 1356

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 77/233 (33%), Gaps = 15/233 (6%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R   S A+   L++L  K            ++  +  +     +   +S + K +   +P
Sbjct: 299 RQAQSTALSRELEELKTKLRV-MEKKRTEDREKLKALETLQQERDKFESIIQKLQAKYQP 357

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E + L   +       E+ + +        E+  L   +  +  +      E +  R
Sbjct: 358 QQLEISDLRKKLRESEAQLEEIERIQAEHDSILEMATLDREMAEETADAFRHEVETLKLR 417

Query: 541 LCE--------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-YKRFRLL 591
           + E        R   E L Q       +       E     +R+   +   +  ++   L
Sbjct: 418 VEELQLEAEVLREENEELGQTMSPEEKSSHGWLQMERTNERLREALIRLRDMTQQQESEL 477

Query: 592 SRQKEEIEKQIAQVTA-----KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             Q +E+++ + +  +     +   EK  +  + + ++  Q+      E MIE
Sbjct: 478 KDQIKELQQDLEEYESIKSQYESTKEKLLVAENNVEDLKQQLETALGAEEMIE 530


>gi|297204729|ref|ZP_06922126.1| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083]
 gi|197710804|gb|EDY54838.1| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083]
          Length = 879

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/214 (11%), Positives = 72/214 (33%), Gaps = 16/214 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++K+I + +   R +++          +  +++    + ++     +++ +L+    ++H
Sbjct: 324 YRKHIEKDAALERRFQQVLVDEPSVEDTISILRGLRERLEVFHGVKIQDTSLVAAATLSH 383

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +    +L + + S   E            + +    +      
Sbjct: 384 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDEITRRVTRLEIEDAALSKETD--- 439

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------AQVTA 607
                A L     E   +      + A   ++  R   R+ +E+ +++        +   
Sbjct: 440 -PASKARLEELRRELADLRGEADAKHAQ--WEAERQAIRRVQELRQELEQVRHEAEEAER 496

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEG 640
             +  + A L    L ++  ++   E Q A  +G
Sbjct: 497 TYDLNRAAELRYGRLQDLERRLAAEEEQLASKQG 530


>gi|257469139|ref|ZP_05633233.1| replicative DNA helicase [Fusobacterium ulcerans ATCC 49185]
 gi|317063386|ref|ZP_07927871.1| replicative DNA helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313689062|gb|EFS25897.1| replicative DNA helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 446

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 51/149 (34%), Gaps = 10/149 (6%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
             +   +        E ++L  +     +  +  + L+   +  N  + ++  +   + +
Sbjct: 2   PEIENLRKIPSDLEAERSVLGGIFLKQDVFGDIIEILSPDDFYKNAHKIIYETMREIYNK 61

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            +   P  +  RL +       ++ D    +   +    E         Y + +    + 
Sbjct: 62  GEPLDPLVVMNRLRKS------EKFDEVGGEQIFYDIVEEVPTAANITAYAKIV----KE 111

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
           + + R+  ++  +I ++T  G  E   IL
Sbjct: 112 KAILRRLGDVGTKIVEMTYSGYEEAENIL 140


>gi|326332085|ref|ZP_08198370.1| ATP-dependent protease La [Nocardioidaceae bacterium Broad-1]
 gi|325950223|gb|EGD42278.1| ATP-dependent protease La [Nocardioidaceae bacterium Broad-1]
          Length = 774

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 67/210 (31%), Gaps = 17/210 (8%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-AALL 488
           +R+ +                K  +            ++ +        K    E   L+
Sbjct: 63  ERVGRFRGGEPAAVLRAVGRAKIGSGVTGPGAALWVEVEPATETTTEHAKELAEEYKRLV 122

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           + ++           ++  +   +         +        Y   E   + L      E
Sbjct: 123 VAVLQRREAWP-VIDQVNRLTEPSE--------IADTAGYAPYLDDEAKRELLETPDVEE 173

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L+++    +D    S  ++    DVR+G ++     +R  LL +Q   I K++ +   +
Sbjct: 174 RLEKVIAWAKDHIAESEVSDKIAEDVREGMEKT----QREFLLRQQLAAIRKELGEGEPE 229

Query: 609 GEAE-KTAILISILHEVHIQ--IHQIESQE 635
           G  + +  +  + L E   +  + +++  E
Sbjct: 230 GSEDYRARVEAADLPEAVREAALREVDKLE 259


>gi|225028180|ref|ZP_03717372.1| hypothetical protein EUBHAL_02452 [Eubacterium hallii DSM 3353]
 gi|224954492|gb|EEG35701.1| hypothetical protein EUBHAL_02452 [Eubacterium hallii DSM 3353]
          Length = 449

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 29/89 (32%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                    ++       E ++L +++     + E    L    +   +   ++  +   
Sbjct: 2   PTVDENFVKRIQPHSEEAERSVLGSMLMDRDAIVEAEDILTKEDFYQRQYGIVFEAMVEL 61

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLD 554
           + E K      +  +L E+   E L  LD
Sbjct: 62  YREGKAVDLITLQNKLKEKEVPEELMSLD 90


>gi|301762642|ref|XP_002916757.1| PREDICTED: coiled-coil domain-containing protein 88B-like [Ailuropoda
            melanoleuca]
          Length = 2139

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 79/237 (33%), Gaps = 24/237 (10%)

Query: 399  DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG-RYWKKNARHR 457
            +E   +    +      +   LR +      + L QL ++   E  G   R+    A  R
Sbjct: 934  EEEVRVARQCQEETRGQQQALLRDH------EALAQLQRRQEAELEGLLVRHRDLKANMR 987

Query: 458  DQKGPSQRLMQSSLVKGKLSKKPSLREAALLL---TLINHPAILQEQYQELADIRYDNNE 514
              +   + L                +E ALL     L+      +   +EL  ++ +++ 
Sbjct: 988  ALELAHRELQGRHEQLQAQRASVEAQEMALLAERERLMQDGHRQRGLEEELRRLQSEHDR 1047

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             QKL + +  +  E +                GEL  +L R   +       ++      
Sbjct: 1048 AQKLLAEVSRERGELQG-------------ERGELRGRLARLELERAQLEVQSQRLRESN 1094

Query: 575  RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            +Q    A  L  +   LSR+  E+ ++  +       E+    +  L+ +  +  ++
Sbjct: 1095 QQLDLSACRLTTQCEALSRENRELLERSLESRDHLHREQ-REYLDQLNALRREKQKL 1150



 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 71/220 (32%), Gaps = 23/220 (10%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            +    + ++ R  QL ++ +    G      +        G         L++ + S   
Sbjct: 814  KEEALRELKTRALQLEEELVQLRQGPDGLGSEGHLEPRTPGAQS----GRLIEVERSNAT 869

Query: 481  SLREAALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             + E   L   + H    L        ++   +   Q+                 E+   
Sbjct: 870  LVAEKVALQGQLQHLEGQLGSLQGRAQELLLQSQRAQEF----------SSRLQAEKSVL 919

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             L  +   + L  L+ +VR A      T      + +   +ALA  +R     RQ+ E+E
Sbjct: 920  ELQGQELHKKLGVLEEEVRVARQCQEETRGQQQALLRD-HEALAQLQR-----RQEAELE 973

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              + +        +   L     E+  +  Q+++Q A +E
Sbjct: 974  GLLVRHRDLKANMRALELAH--RELQGRHEQLQAQRASVE 1011


>gi|118474379|ref|YP_892150.1| replicative DNA helicase [Campylobacter fetus subsp. fetus 82-40]
 gi|118413605|gb|ABK82025.1| replicative DNA helicase [Campylobacter fetus subsp. fetus 82-40]
          Length = 466

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/154 (9%), Positives = 45/154 (29%), Gaps = 4/154 (2%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E ++L  ++     L E Y  +    +       ++  +       +      + +RL  
Sbjct: 15  ERSILSAILFSEDNLGEIYDLINPSDFYLKGHADVYGAMIECLNHDEPVDMAFVKKRLAN 74

Query: 544 RGFGELLKQLDRQVRDAGLW---SATTEANIVDVRQGYQQALALYKRFRLLSRQK-EEIE 599
                +  ++        +    +   E +I          +         SR   ++I 
Sbjct: 75  NFDDTVFTEIITTNSILDIKKYATELKEKSIKRSLINVAHKIPNKVNEDKASRDMVDDIS 134

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +I  +              I+ +V  ++ + ++
Sbjct: 135 GEIYSLVDNSNNGIIKESKEIITDVIKELEKQKN 168


>gi|291524660|emb|CBK90247.1| RecA-family ATPase [Eubacterium rectale DSM 17629]
          Length = 633

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 35/114 (30%), Gaps = 13/114 (11%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M Y ++ I        IS L  Q     R                HD    S     +K 
Sbjct: 1   MYYTQEQIDRANQADLISFLQSQGEQLTRAGNEYRWKR-------HD----SLTIRGNK- 48

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114
            +Y  S    G  + F+    G SF E+V+ L    G   P   P +      +
Sbjct: 49  -WYRHSQSKGGGPVDFVMEFFGKSFTEAVELLTGEKGAAPPPDRPSLAPLSDFR 101


>gi|225903404|ref|NP_001139625.1| homer protein homolog 3 isoform 1 [Mus musculus]
 gi|148696860|gb|EDL28807.1| homer homolog 3 (Drosophila), isoform CRA_b [Mus musculus]
          Length = 359

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 66/211 (31%), Gaps = 16/211 (7%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             RL +   +   E +  G     +         +    +  L + + +  P   E   L
Sbjct: 112 AARLAREKSQDGGEFTSTGLALASHQVPPSPLVSTNGPGEEKLFRSQSADTPGPTERERL 171

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +++  ++ + Q++        +   Q+L   L         +  +   QR       +
Sbjct: 172 KKMLSEGSVGEVQWEA-EFFALQD-SNQRLAGALREANAAATQWRQQLEVQRAEAELLRQ 229

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            + +L+ QV    + +   EA    V Q       L  R +   ++ + ++ Q       
Sbjct: 230 RVAELEAQVAVEPVRAGEKEATSQSVEQ-------LEARVQTKDQEIQTLKNQSTGTREA 282

Query: 609 GEAEKTAILISILH-------EVHIQIHQIE 632
            +  +       +        E+  Q+  +E
Sbjct: 283 PDTAEREETQQQVQDLETRNAELEQQLRSME 313


>gi|257452710|ref|ZP_05618009.1| replicative DNA helicase [Fusobacterium sp. 3_1_5R]
 gi|257466571|ref|ZP_05630882.1| replicative DNA helicase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917726|ref|ZP_07913966.1| replicative DNA helicase [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059251|ref|ZP_07923736.1| replicative DNA helicase [Fusobacterium sp. 3_1_5R]
 gi|313684927|gb|EFS21762.1| replicative DNA helicase [Fusobacterium sp. 3_1_5R]
 gi|313691601|gb|EFS28436.1| replicative DNA helicase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 446

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 57/170 (33%), Gaps = 11/170 (6%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            +L +          E A+L  +   P + +E  + ++   +  N    ++  +   + E
Sbjct: 2   KTLEEISKIPHSLEAEQAILGGIFVEPDLFEEVLEIVSPEDFYKNMYSVIFRSMLEVYRE 61

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                   I  +L +            Q  +  +    +            +  A   + 
Sbjct: 62  SNEIDMVLIKNKLLQ----------VHQFTEEQINEELSNILENSFSAVNLKEYARLVKE 111

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           + + R+  E  ++I ++  + + +    ++     + +++ Q +  + +I
Sbjct: 112 KAILRRLGEAGRKITEIAYRDDRD-AEDILDEAESIVLKVDQQKKGKEII 160


>gi|167628738|ref|YP_001679237.1| hypothetical protein HM1_0621 [Heliobacterium modesticaldum Ice1]
 gi|167591478|gb|ABZ83226.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 501

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 63/463 (13%), Positives = 115/463 (24%), Gaps = 91/463 (19%)

Query: 7   FIKDLLIH---IPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           F  +       I I++ + +      R   +            HD              +
Sbjct: 7   FTDEQKRRANSIDIADFLRRQGEQLTRAGRDWRWKR-------HD------SVTIRGNQW 53

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESV-QRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y  S    G  + F+    G SF E+V   L    GV             K    L  + 
Sbjct: 54  YRHSREEGGLAIDFVREFYGLSFPEAVTLLLGGEGGVEWNQTHKSAPAPRKPFA-LPEMN 112

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
                 + + +K                                R  +    + K   E 
Sbjct: 113 SDMRRVYAYLIKQRF---------------------------IDRDVIAHFAKSKMLYES 145

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPETI 240
               A    +               +F      G       R L   G S +        
Sbjct: 146 CERSADKTKEYH-----------NAVFVGYDENGVPRHAHKRGLYTVGGSYRGNVEGSDP 194

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS---LCQAGVQNVVSS 297
            +                           ++  + + E  +D+LS   L     +     
Sbjct: 195 AYSFHHI---------------------GANDTLYVFEAPIDMLSFITLYPEDWKQNSYV 233

Query: 298 LGTALTEYQLRL---LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
               + E+ L     L     ++VLC D D+ G+ AA +  ++       G R   V   
Sbjct: 234 ALDGVAEHALLRQLELNPRLQKVVLCLDHDEAGIEAAGRLAEI---LNARGCRKVPVRQP 290

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS---FNTPDERAELEIHLKNC 411
             +D +  ++     A                            +T +  A L  H +  
Sbjct: 291 EYKDWNEDLKAKNGVAPIPAQGHPKLEALPEICAGLYETCKSLISTHNPYAMLLEHYEKL 350

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
              I + KL    + A+ + L+ +    +       R  ++ A
Sbjct: 351 KPLIANGKLPQGKAPAVTEHLRVMAAAALLAAQRQYRQMEQPA 393


>gi|291164858|gb|ADD80888.1| gp102 [Rhodococcus phage ReqiDocB7]
          Length = 620

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 39/131 (29%), Gaps = 15/131 (11%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF--HDEKTPSFHCNDSKGF 61
               + DL+  I  +    ++V   R             CP   H +  PS   N  +  
Sbjct: 41  SDKALDDLIDRISFAEAYDKWVGKKREPEGFKDESIMISCPIPGHVDNNPSAWYNRIEKL 100

Query: 62  YYCFSCHVKGDHLSFLSALLGC--------SFIESVQRLAAIAGVPLPVVDP-----KIE 108
           ++C +C   GD  +  S             SF +  + +    G      +        E
Sbjct: 101 WHCMACGKGGDIWTIASYHFNIPDYQTNPQSFHDLRREIGKSYGWSFENENGYLVGYSPE 160

Query: 109 KKEKIQTDLIR 119
           ++     +L  
Sbjct: 161 ERATRAKELEE 171


>gi|61098173|ref|NP_848801.2| centrosomal protein of 120 kDa [Mus musculus]
 gi|81886139|sp|Q7TSG1|CE120_MOUSE RecName: Full=Centrosomal protein of 120 kDa; Short=Cep120;
           AltName: Full=Coiled-coil domain-containing protein 100
 gi|31418418|gb|AAH53439.1| Centrosomal protein 120 [Mus musculus]
          Length = 988

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 91/278 (32%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 648 PRETLEYKAALELEMWKEMQEDIFESQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 705

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L +L  +     S      ++    + ++  + + +Q S+ + +   
Sbjct: 706 AEYSILEGKLQKALTELETREQQLASAEAELQRERKELQLERERNLQELQDSVRRARDDC 765

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   L  L      LQ+Q  +  +       L+K +         +     +  
Sbjct: 766 VYQVELERLKLKQLEEDKQRLQQQLNDAGN---KYKTLEKEFQQFKDQQNNKPEIRLQSE 822

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 823 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 879

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+   +  A  E E        L ++  +++++  QE
Sbjct: 880 LEQMRLRYLAAEEKETVRTEQQELLDIRNELNRLRQQE 917


>gi|332831350|ref|XP_520008.3| PREDICTED: LOW QUALITY PROTEIN: plectin [Pan troglodytes]
          Length = 4684

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 98/286 (34%), Gaps = 20/286 (6%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH---IKD 417
               +       ++L  E+        + E +  S     E            N    ++D
Sbjct: 2336 DHQKNLLDEELQRLKAEATEAARQRSQVEEQLFSVRVQMEELSKLKARIEAENRALILRD 2395

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +     + Q   ++++Q+ ++            +      +     + L +  L +   +
Sbjct: 2396 KDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQA 2455

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             + + R  A    L     + QEQ + L + +      +++   L     E + F     
Sbjct: 2456 VQEATRLKAEAELLQQQKELAQEQARRLQEDK------EQMAQQL---AEETQGFQRTLE 2506

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             +R  +       ++L  +V +     A  E +    R+  ++      R  L +++K  
Sbjct: 2507 AERQRQLEMSAEAERLKLRVAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVT 2566

Query: 598  IEK--QIAQVTAKGEAEKTAILISIL------HEVHIQIHQIESQE 635
            + +  +I +  +  +AE+    I+ L       +   ++ Q++S+E
Sbjct: 2567 LVQTLEIQRQQSDHDAERLREAIAELEHEKEKLQQEAKLLQLKSEE 2612



 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 83/274 (30%), Gaps = 19/274 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       +RE    +    +  AEL          +  + 
Sbjct: 1850 QELIRLRAETEQGEQQRQLLEEELARLQREAAAATQKRQELEAELAKVRAEMEVLLASKA 1909

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1910 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1969

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------FLFSDFVEQKYFL 533
              L E   L  +     +  E    L +   +N  L++L            +   Q    
Sbjct: 1970 RVLAEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKAD 2027

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             EE   +L +    EL                  E  +   RQ  ++ LAL   F   + 
Sbjct: 2028 IEERLAQLRKASDSEL-----------ERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 2076

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             K E+E ++ ++ +  E    +   + L     +
Sbjct: 2077 GKAELELELGRIRSNAEDTLRSKEQAELEAARQR 2110



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/193 (10%), Positives = 55/193 (28%), Gaps = 23/193 (11%)

Query: 457  RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
            R ++     + +      +  ++ +  E  L    +          +        + ELQ
Sbjct: 2295 RQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ-------LEETDHQKNLLDEELQ 2347

Query: 517  KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT--------- 567
            +L +       ++     +    R+      +L  +++ + R   L              
Sbjct: 2348 RLKAEATEAARQRSQVEEQLFSVRVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEA 2407

Query: 568  ----EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
                +      R       A   R      L++Q+   EK + +     +        + 
Sbjct: 2408 EKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAE 2467

Query: 621  LHEVHIQIHQIES 633
            L +   ++ Q ++
Sbjct: 2468 LLQQQKELAQEQA 2480



 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1815 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1874

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1875 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1912



 Score = 37.6 bits (85), Expect = 6.2,   Method: Composition-based stats.
 Identities = 28/271 (10%), Positives = 80/271 (29%), Gaps = 29/271 (10%)

Query: 392  NRSFNTPDERAELEIHLKNCINHIK------DQKLRYYYSQA--IRDRLQQLFQKYITEH 443
                 + D         +     I+       Q +R    Q   + + + +   + + E 
Sbjct: 1347 RYYRESADPLGAWLRDARRRQEQIQAMPLADSQAVREQLRQEQALLEEI-ERHGERVEEC 1405

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
              + + +    +  + +  + +     +       K      +++     +  +     +
Sbjct: 1406 QSFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRYSE 1462

Query: 504  ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
                    +  ++ +   L     E++    +   +R         L++  +        
Sbjct: 1463 L---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQA 1519

Query: 564  SATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAE---------- 612
             A  E    +++Q  Q+ +   +       +QK  I++++ Q+    EAE          
Sbjct: 1520 KAQAEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQAEA 1579

Query: 613  ---KTAILISILHEVHIQIHQIESQEAMIEG 640
                   +   +  V +Q+   E Q    EG
Sbjct: 1580 AERSRLRIEEEIRVVRLQLEATERQRGGAEG 1610



 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 64/212 (30%), Gaps = 19/212 (8%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
               LQQ  Q+ +          ++  R   ++    R    + ++ K  +     E + L
Sbjct: 1527 AKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQA-EAAERSRL 1585

Query: 489  LTLINHPAILQEQYQELADIRY----DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                     ++    +L            ELQ L +       +++    E   +RL  +
Sbjct: 1586 RI----EEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEA--ERLRRQ 1639

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E  ++   +   A    A  EA     R          +    L  Q EE E+++ Q
Sbjct: 1640 VQDESQRKRQAEAELASRVKAEAEAAREKQRA--------LQALEELRLQAEEAERRLRQ 1691

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +   +    L +       ++    +  A
Sbjct: 1692 AEVERARQVQVALETAQRSAEAELQSKRASFA 1723


>gi|324998554|ref|ZP_08119666.1| replicative DNA helicase [Pseudonocardia sp. P1]
          Length = 470

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 44/150 (29%), Gaps = 11/150 (7%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +   +    E ++L  ++     + +  + L    +     Q ++  +   +   +    
Sbjct: 33  RQPPQDLTAEQSVLGGMLLSKDAIADVVEVLRPEDFYRPAHQTVYETILDLYGRGEPADA 92

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L  RG      +L R      L +             Y + +      + + R+
Sbjct: 93  VTVSAELQRRG------ELVRLGGAPYLHTLIATVPTAANAAYYAEIVG----EKAILRR 142

Query: 595 KEEIEKQIAQVTAKGEA-EKTAILISILHE 623
             E   +I Q+   G    +   ++     
Sbjct: 143 LVEAGTRIVQLGYHGNEGGEVEEVVDRAQA 172


>gi|325299324|ref|YP_004259241.1| DNA primase [Bacteroides salanitronis DSM 18170]
 gi|324318877|gb|ADY36768.1| DNA primase [Bacteroides salanitronis DSM 18170]
          Length = 316

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
          Y    ++  N      W   PF +E  PSF  N  +  ++ F     G+ +
Sbjct: 20 YFPVKQQGVNL-----WYKSPFREENEPSFKVNTEREQWFDFGLEKGGNII 65


>gi|148677957|gb|EDL09904.1| expressed sequence AU016693, isoform CRA_c [Mus musculus]
          Length = 1001

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 91/278 (32%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 661 PRETLEYKAALELEMWKEMQEDIFESQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 718

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L +L  +     S      ++    + ++  + + +Q S+ + +   
Sbjct: 719 AEYSILEGKLQKALTELETREQQLASAEAELQRERKELQLERERNLQELQDSVRRARDDC 778

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   L  L      LQ+Q  +  +       L+K +         +     +  
Sbjct: 779 VYQVELERLKLKQLEEDKQRLQQQLNDAGN---KYKTLEKEFQQFKDQQNNKPEIRLQSE 835

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 836 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 892

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+   +  A  E E        L ++  +++++  QE
Sbjct: 893 LEQMRLRYLAAEEKETVRTEQQELLDIRNELNRLRQQE 930


>gi|312890210|ref|ZP_07749751.1| DNA primase [Mucilaginibacter paludis DSM 18603]
 gi|311297322|gb|EFQ74450.1| DNA primase [Mucilaginibacter paludis DSM 18603]
          Length = 338

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 27/103 (26%), Gaps = 21/103 (20%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           N   D IK++L  +   +++                D+W   P   E T SF  N  K  
Sbjct: 10  NIGPDEIKEILNRVRDMDMVSYLSKLGYEPVKVSGNDHWYLSPLRSESTASFKVNRLKNQ 69

Query: 62  YYCFSCHV--------------------KGDHLSFLSALLGCS 84
           +  F                         G  + F       +
Sbjct: 70  WIDFG-GRPTPEALAKAQKYNRKPPEFNGGTLVDFAMQHNNWT 111


>gi|302531306|ref|ZP_07283648.1| replicative DNA helicase [Streptomyces sp. AA4]
 gi|302440201|gb|EFL12017.1| replicative DNA helicase [Streptomyces sp. AA4]
          Length = 465

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/71 (11%), Positives = 24/71 (33%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +   +    E ++L  ++     + +  + L    +     Q ++  +   +   +   P
Sbjct: 26  RQPPQDIAAEQSVLGGMLLSKDAVADVIEALGPGDFYRPAHQAVYDCILDLYGRGEPADP 85

Query: 535 EEIHQRLCERG 545
             +   L  RG
Sbjct: 86  ITVAAELERRG 96


>gi|319763792|ref|YP_004127729.1| replicative DNA helicase [Alicycliphilus denitrificans BC]
 gi|330823944|ref|YP_004387247.1| replicative DNA helicase [Alicycliphilus denitrificans K601]
 gi|317118353|gb|ADV00842.1| replicative DNA helicase [Alicycliphilus denitrificans BC]
 gi|329309316|gb|AEB83731.1| replicative DNA helicase [Alicycliphilus denitrificans K601]
          Length = 492

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 61/181 (33%), Gaps = 15/181 (8%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                + + ++       E+++L  L+            L D  +  +E Q+++S + + 
Sbjct: 37  PPDREVAQLRVPPHSIEAESSVLGGLLLDNMAWDRVGDLLVDGDFYRHEHQQIYSAIGAL 96

Query: 526 FVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVR---- 575
               K      +++ L   G  E       L  L + V  A       E           
Sbjct: 97  INASKPADVITVYEHLQGLGKAEETGGLAYLNSLAQYVPSASNIRRYAEIVRERAILRKL 156

Query: 576 ---QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQ 630
                     A   + R + R  +E E++I  +  +G    +    L S++ ++  ++ +
Sbjct: 157 VTASDEIATNAFNPQGRPVERILDEAEQKIFAIGEEGSRMKQGFQSLDSLVIDLLDRVQE 216

Query: 631 I 631
           +
Sbjct: 217 M 217


>gi|88658191|ref|YP_507269.1| replicative DNA helicase [Ehrlichia chaffeensis str. Arkansas]
 gi|88599648|gb|ABD45117.1| replicative DNA helicase [Ehrlichia chaffeensis str. Arkansas]
          Length = 488

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/173 (9%), Positives = 55/173 (31%), Gaps = 15/173 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ---KYFLPEEIHQ 539
            E  LL +++    I       +    + ++  ++++  +               +    
Sbjct: 24  AEQILLGSMLRDNRICDAVEDIITSDVFFDSLHRRIFEQIVKINKRGLVANEVSLKMFFD 83

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-----------F 588
              +      +  L +    A +         + V    ++ L  + +            
Sbjct: 84  NDEDLIESGGVDYLAKIAAKASIIFDIKNVANIVVDTYLRRCLISFGQDLISGAYNYDVD 143

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEG 640
                Q E   +++  +  +G+++KT    ++L   +  +I   ++ E  ++G
Sbjct: 144 NSAVYQIESAAQKLFLLGNQGKSDKTYHQFALLVANIKKRIEFAKNNEGTLQG 196


>gi|327280089|ref|XP_003224786.1| PREDICTED: periplakin-like [Anolis carolinensis]
          Length = 1756

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 91/267 (34%), Gaps = 21/267 (7%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     ++   R              E     +N +  ++++  +    + I++ ++   
Sbjct: 1181 DPQTENEVANLRLELVEQERRYRGGEEQLKSCQNELAALRNRGPQVEVQEVIKEVIKYKT 1240

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                 +     R    +     ++   +       ++     KP ++   ++  ++ +  
Sbjct: 1241 DPETEQELQNLRDEIVDRTRAIERADLEIYQLKQEIQMLKEAKPQVQMKEVVQEVLQYRE 1300

Query: 497  ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
              Q + +            + L + L  +  +      E   Q    R   E L Q+  +
Sbjct: 1301 DPQTREEV-----------ESLRAQLAEEQKKHMDLERERQIQEERIREKEEELSQVKEK 1349

Query: 557  VRDAGLWSATTEANI--------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            V    +     +  +         ++     Q  +L    R L R++ E+E+Q+ ++  +
Sbjct: 1350 VVQQEVVKLEQDPALKAEISCFSQNIESELHQIDSLRNEMRKLQRRRSELERQLDELEKE 1409

Query: 609  GEAEKTAILISILHEVHIQIHQIESQE 635
             +A + A L   +  + I++ ++E QE
Sbjct: 1410 RQARREAEL--EVQRLKIRLSELEEQE 1434



 Score = 37.9 bits (86), Expect = 4.7,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 99/278 (35%), Gaps = 11/278 (3%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
             +     A  +  +++L     L K++ + +      + +  E  L+      K+ +   
Sbjct: 844  AKFTEVNAVNRQRLQNLEFAQNLLKQQPDVQLMQESVQSSRSERPLEEIWKLRKELEDES 903

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
               Q + + ++ + +  +              +   +K P  +L  S     +   +   
Sbjct: 904  QRRQQLEEEIKVIQENILL-LQNQKPQESLVTKEVVKKVPDPQLEDSFYKMQQNFAEEQR 962

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            +   L     N    L+ + + L   + +  +   +   L  +  + +     ++ + L 
Sbjct: 963  KNQELQ----NELEALKLKLRTLEHEKREGAQEYVVKEVLRIEPDKAQAEEILKLKEELE 1018

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +    E  +Q D  +    + + + E N    +   ++ L L +    L  + +++++  
Sbjct: 1019 DLRRQEGSRQNDMLLLRRQIATLSDEKNKEQEKVTEKEVLKL-QNDPQLESEYQQLQESK 1077

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             + ++  + ++       L  +  ++ Q+E +  M EG
Sbjct: 1078 QRESSLRQQQE-----EELRFLQAKLKQLEKERVMAEG 1110


>gi|299141193|ref|ZP_07034330.1| mobilizable transposon protein [Prevotella oris C735]
 gi|298577153|gb|EFI49022.1| mobilizable transposon protein [Prevotella oris C735]
          Length = 314

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
           P  ++  PSF     K  +  ++    G  +     L GC+ +E++  L   A
Sbjct: 23 SPLREDMHPSFKVETEKNLWIDYAEGRGGSIIDLCMRLEGCTLLEAIHLLGRNA 76


>gi|291460484|ref|ZP_06599874.1| replicative DNA helicase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291416856|gb|EFE90575.1| replicative DNA helicase [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 449

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/167 (9%), Positives = 56/167 (33%), Gaps = 10/167 (5%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S  +  ++       E +++ +++     +    + L++  +   +   L+  +   + E
Sbjct: 5   SEKLIQRVIPHSQEAEQSVIGSMLRDKEAVAAATELLSEEDFYQRQYAILFRVMRELYNE 64

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            K      + ++L  +     L ++              E           ++     + 
Sbjct: 65  AKPVDLVTVQEKLRGKDIPPELSEIA----------FLKEVMQSVATSVNVRSYCSIVKE 114

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           + + R      ++IA++   G  E   +L     ++   + +  ++E
Sbjct: 115 KSVLRALIRANEEIAELCYSGGEELEEVLSIAEKKIFDLLQKRSARE 161


>gi|298491669|ref|YP_003721846.1| replicative DNA helicase ['Nostoc azollae' 0708]
 gi|298233587|gb|ADI64723.1| replicative DNA helicase ['Nostoc azollae' 0708]
          Length = 602

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 10/140 (7%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +L  +    E A+L  ++  P  +      L    +  N  + ++    +   + K   
Sbjct: 13  NRLPPQNIEVEEAILGGILLDPEAISRIRDRLVLEAFYINAHKDIYQAALTLHAQNKPTD 72

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +   L +      L ++  + + A L   T  A  +D   G           + L R
Sbjct: 73  LLSLTNWLTDNDK---LTRIGGRNKLATLVDRTVSAVNIDALAGLVME-------KYLRR 122

Query: 594 QKEEIEKQIAQVTAKGEAEK 613
           Q  +   +I Q+  + E E 
Sbjct: 123 QLIKAGNEIVQLGYETETEL 142


>gi|161044|gb|AAA29905.1| myosin heavy chain [Schistosoma mansoni]
          Length = 1940

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 29/258 (11%)

Query: 400  ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
            +R ++E  +K     + D++ +      ++ ++    ++   +        +K  + +  
Sbjct: 897  QRGDMEQRIKELEERLADEEDQAANLTEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 956

Query: 460  KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
            K    R +QS + +         ++   L          +   + L       N L KL 
Sbjct: 957  KDNQIRTLQSEMAQQDEMIGKLNKDKKNLE------EQNKRTQEALQAEEDKVNHLNKLK 1010

Query: 520  SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568
            + L S   E +             E+  ++L    +   E +  L+R  RD        E
Sbjct: 1011 AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQLRRKE 1070

Query: 569  ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT---------AILIS 619
            A I  +   ++    L  +   L R+ +E++ +I ++    EAE+            L S
Sbjct: 1071 AEIGGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 1127

Query: 620  ILHEVHIQIHQIESQEAM 637
             L EV  ++ + +   A 
Sbjct: 1128 ELEEVVDRLEEQDGATAA 1145



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 91/294 (30%), Gaps = 14/294 (4%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              + + Y  +  E    +             + +     ++   L    KN  + I D  
Sbjct: 1440 AEWQKKYADSQAELENAQRDARGQSTEIFRLKAQLEEVHEQMEGLRRENKNLSDEIHDLT 1499

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--SSLVKGKLS 477
             +          + +  ++   E        ++     +Q+    +  Q   S ++ ++ 
Sbjct: 1500 EQLGEGGRSVHEIDKNRRRLEMEKEELQAALEEAESALEQEEAKVQRAQLEMSQIRQEID 1559

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            ++ + +E     T  NH   ++ Q   L        E  ++   L  D  E +  L    
Sbjct: 1560 RRLAEKEEEFEATRKNHQRAMESQQASLEAEGKGKAEAMRVKKKLEQDINELEVSLDGAN 1619

Query: 538  HQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKR 587
              R  +            EL  QL+   R         +A         G    L +   
Sbjct: 1620 RARAEQEENVKKFQQQVRELQSQLEDDQRQRDDLREQFQAAERRATVLAGELDELRIALD 1679

Query: 588  FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
                SR+  E E+  A   A   + +TA L +   ++   +  +++  +EA  E
Sbjct: 1680 QAERSRKIAEAERAEASDRATEMSTQTASLAAQKRKLEADLAAMQADLEEAANE 1733



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 79/264 (29%), Gaps = 32/264 (12%)

Query: 402  AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
                  L+  I  +++       +++  ++ +Q  +  + E           A       
Sbjct: 1091 QRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLESELEEVVDRLEEQD-GATAAQSDL 1149

Query: 462  PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
              +R  +   +K  L       E A+          + E   +L        + +K  S 
Sbjct: 1150 TKKREAELMKLKRDLEDTRLQNEQAIATMRKKQSDAINELADQLDQANKAKAKAEKERSQ 1209

Query: 522  LFSDFVEQKYFLPEEIHQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVD 573
              ++  +    +   +  +L              E+  +LD   R+    ++T   +  +
Sbjct: 1210 FKAELDDAHNQVDSIMKAKLNSEKTVKALESQLQEVSVKLDEATRNLNEQASTKARSSQE 1269

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--------------------- 612
            V +  +Q      +   L++ K+++  Q+ +     E E                     
Sbjct: 1270 VSELQRQLEEAESQLSQLNKIKQQLSAQLEEARHSLEDESRMKAKLNGEVRNLTSDLDSL 1329

Query: 613  --KTAILISILHEVHIQIHQIESQ 634
                    S   ++  Q+ +++ +
Sbjct: 1330 RETLEEEQSAKGDLQRQLQKLQGE 1353


>gi|224824989|ref|ZP_03698095.1| replicative DNA helicase [Lutiella nitroferrum 2002]
 gi|224602660|gb|EEG08837.1| replicative DNA helicase [Lutiella nitroferrum 2002]
          Length = 471

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 48/158 (30%), Gaps = 10/158 (6%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           S     S+    +   +    E ++L  L+   +   +    + +  +  ++ + ++  +
Sbjct: 7   STEYFDSATAAVRTPPQSIEAEQSVLGGLLLDNSAWDKIADVVGEADFYRHDHRLIYKHI 66

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                  +      + + L + G    +  L      A    +              +  
Sbjct: 67  AKLVEHSRPADVVTVLESLDKSGESGAVGGLAYLATLAQNTPSAANI----------RRY 116

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
           A   R R + RQ  ++  +IA+          A L+  
Sbjct: 117 AEIVRERSIMRQLAQVGTEIAEAAYAPMGRDAAQLLDE 154


>gi|332143164|ref|YP_004428902.1| replicative DNA helicase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553186|gb|AEA99904.1| replicative DNA helicase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 414

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 49/143 (34%), Gaps = 10/143 (6%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
            S     +++ K K+       E ++L +++  P    +  + + D  + N   Q ++  
Sbjct: 2   ASASKNDNNVEKLKVPPHSIEAEQSVLGSMLIDPESWDKVAELVTDNDFYNRSHQIIFRA 61

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +       +      + + L +        +L+     A L               Y Q 
Sbjct: 62  ITRLLNSSQPIDLITVSEELEKH------DELEDAGGFAYLGELAKNTPSSANVVSYAQI 115

Query: 582 LALYKRFRLLSRQKEEIEKQIAQ 604
           ++     R ++R+   +  +IA+
Sbjct: 116 IS----ERAITRELIGVAHEIAE 134


>gi|325829858|ref|ZP_08163316.1| efflux ABC transporter, permease protein [Eggerthella sp. HGA1]
 gi|325488025|gb|EGC90462.1| efflux ABC transporter, permease protein [Eggerthella sp. HGA1]
          Length = 1177

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 68/229 (29%), Gaps = 21/229 (9%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRY-------WKKNARHRDQKGPSQRLMQSSLVKGKL 476
               + DR++ L  +         +         K+    R++     +L  +       
Sbjct: 252 LVDEVADRIKALAPEREQARVDQLKSDAQKELDEKRADYERERADAQSQLDDAKRQLDDA 311

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           +   +  E  L      + +   E     A         Q+L        + +     + 
Sbjct: 312 AATIAASEQELADGQAAYDSGASELASRRASAE------QQLADA--ERQIAEGQAQLDA 363

Query: 537 IHQRLCERGFGELLKQL------DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
              +L +        ++      D      G W   ++     + +              
Sbjct: 364 QRPQLDDAAGQLQAARVQWQQGADALAAAWGDWQRQSDELDAGITRAQAGVADAAAGVDR 423

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + +  + +E+QI Q+    +A+K A L +    +  Q   + +Q A+++
Sbjct: 424 IQKGIDALEEQIKQLDPDKDAQKIAELRAEQDALKAQQQDLRAQMALVQ 472


>gi|314922008|gb|EFS85839.1| replicative DNA helicase [Propionibacterium acnes HL001PA1]
          Length = 448

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 50/147 (34%), Gaps = 10/147 (6%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
             +      +   +    E ++L  ++     + +  +E+  + +     + +++ +   
Sbjct: 5   PAEPGPSLDRNPPQDIDAEKSVLGAMLFSKDAIADVVEEIKGVDFYRPGHELIFNTITDL 64

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
           +              L  RG      +L+R      L    T   +      Y + +A  
Sbjct: 65  YGRGDPADTVTTADELDRRG------ELERAGGRLYLAELLTNVTVTANAAYYAKIVA-- 116

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAE 612
              + + R+  E   +IAQ+  +G+ E
Sbjct: 117 --EKAVLRRLVEASIRIAQMGYQGQGE 141


>gi|301118911|ref|XP_002907183.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262105695|gb|EEY63747.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 2213

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 108/339 (31%), Gaps = 18/339 (5%)

Query: 310  LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
            L ++  +    F+        A +     L  L          ++ G           + 
Sbjct: 1382 LQEVMRQATDQFETQKHSAAMATEDGRTQLQKLTAQLVQRDAQMTEGH----QQLRRMQE 1437

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
                L  +           + +N   N   +    E      +       LR    + + 
Sbjct: 1438 MVRSLEEKLRTQQYESESLQMKNDQLNGQLDALRNEKRGLEHVMRRHTSTLRDGLEEDLS 1497

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             RL++L +              +     D K  S +L  SS  + KL ++ +  +  L +
Sbjct: 1498 QRLERLARDMERRVQEESEKTAQLQSVLDSKLDS-QLQHSSEERTKLEQENARLQRELEM 1556

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIHQRLC-ERG 545
                    L++   EL  ++ +  E ++L S L    + + E +          +  +  
Sbjct: 1557 YAAE----LEKMDAELLQLQREREEQERLLSDLQQTIATYEEDQRTRNNANDDFIRLDAV 1612

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
              EL    ++  +D        E  + +++    +  +   + + ++R   +      Q 
Sbjct: 1613 HSELKTTHEQFKQDLVAQLREKEKEVAELQDEMTELQSKLDQEKEMTRHLMDRSHADKQQ 1672

Query: 606  TAKGEAEKTAILISILHEVHIQIHQIE-----SQEAMIE 639
             AK  +E     ++   E+   + +++     +++A ++
Sbjct: 1673 HAKELSEAEEKQLNRAKEMEASMKELQHKLRANEQAAVD 1711



 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 41/386 (10%), Positives = 106/386 (27%), Gaps = 46/386 (11%)

Query: 291  VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
             +     L       +   L     + +  ++ D      A    D  +      + +  
Sbjct: 1562 EKMDAELLQLQREREEQERLLSDLQQTIATYEEDQRTRNNAN---DDFIRLDAVHSELKT 1618

Query: 351  VLLSRGEDPDSFIRCYGKT--AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
                  +D  + +R   K     +  + E    +D   +        +  D++   +   
Sbjct: 1619 THEQFKQDLVAQLREKEKEVAELQDEMTELQSKLDQEKEMTRHLMDRSHADKQQHAKELS 1678

Query: 409  KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
            +     +   K      + ++ +L+   Q  +       +  + + +  +++    +   
Sbjct: 1679 EAEEKQLNRAKEMEASMKELQHKLRANEQAAVDREHMRVKELEASVKRLERELQVSQQSM 1738

Query: 469  SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            +   +  + +K   RE         +  +  E    +  +     E++ L   +     E
Sbjct: 1739 TGKEQSAMHEKLQ-REREHRALQTRYDTLDAENAANVHKMDTKVEEIEHLHGEIDQLHEE 1797

Query: 529  QKYFLPE---------EIHQRLCERG-----FGELLKQLDRQVRDAGLWSATTEANIV-- 572
             +    E              L           EL  +L  +  +A    A   A     
Sbjct: 1798 IERLNEEVRDNTAEMDNARNHLHVSEQLTMKLEELQDELAAREDEARRRDADLAAKEEKL 1857

Query: 573  ----DVRQGYQQALALYKRFRL-----LSRQKEEIEKQIAQVTAK----GEAEKTAILIS 619
                DV +  ++ L    R        L +Q  ++ +Q+ +         +       + 
Sbjct: 1858 QLARDVEEELKRQLRDNVRRNEDEAASLKQQNAKLREQLKRAAQAKLSVEDDAARETAMK 1917

Query: 620  IL-----------HEVHIQIHQIESQ 634
             L            E+  Q+ Q+E  
Sbjct: 1918 NLEKAYDDSVQREQELTSQLAQLEDS 1943



 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/298 (10%), Positives = 90/298 (30%), Gaps = 18/298 (6%)

Query: 344  PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
              +          +  +         A  + + + L      ++   +          A+
Sbjct: 983  QEHVDRMAQEHEKQLAEQHKYRGEVEAERQRLTQVLQQESTRFQNLRKEAGEARAQIEAQ 1042

Query: 404  LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
                +K     + D+K R    + ++ +  ++ ++ I   +        N R   + G  
Sbjct: 1043 AMAAMKQREQQLLDEKARVE--EELQLQFSKINEENIELRATVDNLKDINRRKSTEIGRL 1100

Query: 464  QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                Q +  + +   + + +   L   +      ++   + LA     ++E  KL S  F
Sbjct: 1101 MATSQEAEQQIQSRMQEAQKMQQLTEEVARAKQQMETLSKTLAAKESAHDEAMKLQSAEF 1160

Query: 524  SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
             +         E     + +    +L   ++   +   ++         ++ +   +   
Sbjct: 1161 ENQYNDFVSQVEGQFNEMTQEN-EQLRSDIEEAAKKLTMYEGQVTVGGEELNKWRSECEK 1219

Query: 584  LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
            L  +    +R+ E +++++                  L E+  +  +     A IE F
Sbjct: 1220 LQHQLHEGARENESLKRELE---------------HRLQELEQRHKENAELNARIEQF 1262


>gi|296125263|ref|YP_003632515.1| replicative DNA helicase [Brachyspira murdochii DSM 12563]
 gi|296017079|gb|ADG70316.1| replicative DNA helicase [Brachyspira murdochii DSM 12563]
          Length = 467

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 4/146 (2%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E +LL  ++ +   +     ++    + +   + L+  +            E   + L 
Sbjct: 10  AEESLLGAMLQNSQAISAALSKIKSTDFYSERNRLLYESIIEMNNRGIAVNAETTLRYLK 69

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           E G  E + Q D    +A L             + Y + +A     R L    ++I+K  
Sbjct: 70  ENGLFEKIIQND----EAYLMRIIDGTPFHQNAKYYAEIIAEKSLLRDLITAAQDIQKSA 125

Query: 603 AQVTAKGEAEKTAILISILHEVHIQI 628
            +       E        + EV  + 
Sbjct: 126 YEAKDAETKEIADFAEKKIFEVTQRR 151


>gi|331655767|ref|ZP_08356756.1| replicative DNA helicase [Escherichia coli M718]
 gi|331046541|gb|EGI18630.1| replicative DNA helicase [Escherichia coli M718]
          Length = 456

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 10/136 (7%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L  L+       E    +    +  +  ++++S +       K      + + L 
Sbjct: 17  AEQAVLGGLMLDNCRWDEVADRIVADDFYTSAHREIFSEMERLLSHGKPIDLITLAEALE 76

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           + G      +L+R    A L   +           Y   +    R R + R+   +  +I
Sbjct: 77  QNG------KLERAGGFAYLAEMSKNTPSAANICAYADIV----RERAVVREMISVANEI 126

Query: 603 AQVTAKGEAEKTAILI 618
           A+     +   +  L+
Sbjct: 127 AEAGYAQDGRGSNELL 142


>gi|224046178|ref|XP_002195468.1| PREDICTED: similar to TBP associated factor [Taeniopygia guttata]
          Length = 745

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 14/158 (8%)

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK----YFLPEEIHQRLCER 544
             L  +  ++       AD  + +  L+ L S + +                      + 
Sbjct: 512 YILATNSELIGTVIHSCADEPFLS--LEALQSKIMNIGKRHDIMELNSDVVNFISHATQE 569

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ--- 601
               LL++L    +        ++  I  V    +  L   ++   L +Q+++ E++   
Sbjct: 570 RLRGLLEKLTVIAQHRVSTHKGSDKYI--VCSDTRAQLRFLEKLDHLEKQRKDEEEREML 627

Query: 602 IAQVTAKGEAE--KTAILISILHEVHI-QIHQIESQEA 636
           +    ++   E  +   L     E+   ++ Q++ +EA
Sbjct: 628 LRAAKSRSNKEDPEQLRLKQKAKEMQQLELAQMQQREA 665


>gi|94501360|ref|ZP_01307880.1| replicative DNA helicase [Oceanobacter sp. RED65]
 gi|94426473|gb|EAT11461.1| replicative DNA helicase [Oceanobacter sp. RED65]
          Length = 457

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 10/130 (7%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K+       E ++L  L+      +   + L    +   + +++++ +     E+K F  
Sbjct: 9   KMPPNSVDAERSVLGGLMLDNRAFETVSERLIPADFFRTQHRQIYTIIGKLAEEEKPFDV 68

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L E    + L ++      + L  +T  A        Y   +    + + L R+
Sbjct: 69  LTLSDELQE---IDALAEVGGLEYLSELVESTPSAA---NIAAYADIV----KEKSLLRR 118

Query: 595 KEEIEKQIAQ 604
             E    IA+
Sbjct: 119 LAEAATDIAE 128


>gi|260871197|ref|YP_003237977.1| replicative DNA helicases [Escherichia coli O111:H- str. 11128]
 gi|257767776|dbj|BAI39269.1| replicative DNA helicases [Escherichia coli O111:H- str. 11128]
          Length = 454

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 10/136 (7%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L  L+       E    +    +  +  ++++S +       K      + + L 
Sbjct: 15  AEQAVLGGLMLDNCRWDEVADRIVADDFYTSAHREIFSEMERLLSHGKPIDLITLAEALE 74

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           + G      +L+R    A L   +           Y   +    R R + R+   +  +I
Sbjct: 75  QNG------KLERAGGFAYLAEMSKNTPSAANICAYADIV----RERAVVREMISVANEI 124

Query: 603 AQVTAKGEAEKTAILI 618
           A+     +   +  L+
Sbjct: 125 AEAGYAQDGRGSNELL 140


>gi|307945027|ref|ZP_07660363.1| putative replicative DNA helicase [Roseibium sp. TrichSKD4]
 gi|307770900|gb|EFO30125.1| putative replicative DNA helicase [Roseibium sp. TrichSKD4]
          Length = 466

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 50/133 (37%), Gaps = 6/133 (4%)

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
           +       +  + E ++L +L+++P+   E  + L    +     Q+++  + S     K
Sbjct: 1   MQNNDKVHQTIMAERSVLGSLLDNPSAYFEVLETLKAEHFIRPINQRIYEAMGSILSAGK 60

Query: 531 YFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                 +  R+ +    +       L  L   +R++      +  + VD+     +A AL
Sbjct: 61  KASLNLLVARIGDEYEEDGRDGLLTLNYLTALLRESQSGETVSPMDFVDIIVDAWRARAL 120

Query: 585 YKRFRLLSRQKEE 597
            +    + ++  +
Sbjct: 121 DETANWVKKELAK 133


>gi|331649917|ref|ZP_08350993.1| replicative DNA helicase [Escherichia coli M605]
 gi|331041174|gb|EGI13328.1| replicative DNA helicase [Escherichia coli M605]
          Length = 456

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 10/136 (7%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L  L+       E    +    +  +  ++++S +       K      + + L 
Sbjct: 17  AEQAVLGGLMLDNCRWDEVADRIVADDFYTSAHREIFSEMERLLSHGKPIDLITLAEALE 76

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           + G      +L+R    A L   +           Y   +    R R + R+   +  +I
Sbjct: 77  QNG------KLERAGGFAYLAEMSKNTPSAANICAYADIV----RERAVVREMISVANEI 126

Query: 603 AQVTAKGEAEKTAILI 618
           A+     +   +  L+
Sbjct: 127 AEAGYAQDGRGSNELL 142


>gi|237723469|ref|ZP_04553950.1| DNA primase PrmN1 [Bacteroides sp. D4]
 gi|299146541|ref|ZP_07039609.1| DNA primase [Bacteroides sp. 3_1_23]
 gi|229438159|gb|EEO48236.1| DNA primase PrmN1 [Bacteroides dorei 5_1_36/D4]
 gi|298517032|gb|EFI40913.1| DNA primase [Bacteroides sp. 3_1_23]
          Length = 319

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79
          Y    ++  N      W   P  +E  PSF  N  +  +Y F+    G+ ++    
Sbjct: 20 YSPVKQQGINL-----WYKSPLREETEPSFKVNTERNQWYDFAIGKGGNIIALAQE 70


>gi|323969238|gb|EGB64540.1| replicative DNA helicase [Escherichia coli TA007]
          Length = 456

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 10/136 (7%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L  L+       E    +    +  N  ++++S +       K      + + L 
Sbjct: 17  AEQAVLGGLMLDNCRWDEVADRIVADDFYTNAHREIFSEMERLLSHGKPIDLITLAEALE 76

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           + G      +L+R    A L   +           Y   +    R R + R+   +  +I
Sbjct: 77  QNG------KLERAGGFAYLAEMSKNTPSAANICAYADIV----RERAVVREMISVANEI 126

Query: 603 AQVTAKGEAEKTAILI 618
           A+     +   +  L+
Sbjct: 127 AEAGYAQDGRGSNELL 142


>gi|311251075|ref|XP_003124440.1| PREDICTED: homeobox protein cut-like 1-like [Sus scrofa]
          Length = 1158

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 102/286 (35%), Gaps = 22/286 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +      +  N    + K +    +A+++++++ 
Sbjct: 8   DPVPALDLGQQLQLKVQRLHDIETENQKLRETLDEYNKEFAEVKNQEVTIKALKEKIREY 67

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q    +        ++  ++   +   +          KL +     +   L T +   
Sbjct: 68  EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQT--LQTALEKT 125

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +I    +E++ + + L   +   E      E + ++L        L 
Sbjct: 126 RTELFDLKTKYDEEITAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 185

Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598
              ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++
Sbjct: 186 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 245

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           E+Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 246 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 291


>gi|145553100|ref|XP_001462225.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124430063|emb|CAK94852.1| unnamed protein product [Paramecium tetraurelia]
          Length = 739

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 59/146 (40%), Gaps = 9/146 (6%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            +  +  +E+  +R    + + L   L     E      E++ + L ++       +L +
Sbjct: 200 KLGDDPNKEVDKLRKQQKDQEDLKKKLADALKE-----IEQLKKLLNDKTAE--CNRLGQ 252

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--K 613
           QV      +   +  I ++ +  QQ   L  R   L ++ + +++Q+     + E +   
Sbjct: 253 QVAQLTQDNQAKDQRIQELERYAQQYQELQIRVNKLEQELDNLQRQLKDKNQQLEDKTRL 312

Query: 614 TAILISILHEVHIQIHQIESQEAMIE 639
              L   + ++  ++ +++ Q A +E
Sbjct: 313 IDNLNREIQQLKAELQRLKDQIANLE 338


>gi|321467016|gb|EFX78008.1| hypothetical protein DAPPUDRAFT_105663 [Daphnia pulex]
          Length = 4511

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 97/295 (32%), Gaps = 14/295 (4%)

Query: 336  DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
            +          +      +  +D         +   +++  ES     +  + E ++R  
Sbjct: 2311 EKRRIQKESEEKDRLQKEAEEKD----RLLKEEEEKQRIQKESEEKDRLQKEAEEKDRLL 2366

Query: 396  NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
               +E+  ++   +      K+ + +    +   ++  Q  QK   E     +  ++  R
Sbjct: 2367 KEEEEKQRIQKESEEKDRLQKEAEEKDRLLKEEEEK--QRIQKESEEKDRLQKEAEEKDR 2424

Query: 456  HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
               ++   QR+ + S  K +L K+   ++      L+      Q   +E  +      E 
Sbjct: 2425 LLKEEEEKQRIQKESEEKDRLQKETEEKDR-----LLKEKEEKQRMQKESEEKDRLQKEA 2479

Query: 516  QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
            ++    L  +  E++    E   +   ++   E  + L  +     +   + E + +   
Sbjct: 2480 EE-KDRLLKEEEEKRRIQKESEEKDRLQKETEEKDRLLKEEEEKQRMQKESEEKDRLQKE 2538

Query: 576  QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               +    L K      R ++E+E++        E ++          +  ++ +
Sbjct: 2539 AEEKD--RLLKEEEEKQRIQKELEEKNRLQKETEEKDRLLKEEEEKQRIQKELEE 2591



 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 36/321 (11%), Positives = 102/321 (31%), Gaps = 20/321 (6%)

Query: 319  LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES 378
            +  DGD    R      +                     D     R       ++L  E 
Sbjct: 2096 ISGDGDKAERRKTEGE-EKKSVQKEVNVAEQKKKEGEEND----RRLEASEEKQRLQKEV 2150

Query: 379  LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438
                  L +     R     +E+  ++   +     +++ + + +  Q   ++     QK
Sbjct: 2151 EEKDQFLREEVNRQRLQEEAEEKDRIQKEAEENERLLRESEEKQH-LQMEAEK--DRLQK 2207

Query: 439  YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
               E     +   +  R + + G   RL + +  K +L K+   ++   +         L
Sbjct: 2208 EAEEKDRLLKEEDEKQRIQKESGEKDRLQKETEEKDRLLKEEEEKQR--IQIESEEKDRL 2265

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            Q++ +E   +  +  E +++         + +     E   RL +    +  +++ ++  
Sbjct: 2266 QKEAEEKDRLLKEEEEKRRIQK---ESEEKDRLQKEAEEKDRLLKEEEEK--RRIQKESE 2320

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
            +        E     + +  ++   + K      R ++E E++   +  + E ++     
Sbjct: 2321 EKDRLQKEAE-EKDRLLKEEEEKQRIQKESEEKDRLQKEAEEKDRLLKEEEEKQRIQKES 2379

Query: 619  SILHEVHIQIHQ----IESQE 635
                 +  +  +    ++ +E
Sbjct: 2380 EEKDRLQKEAEEKDRLLKEEE 2400



 Score = 37.2 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 101/269 (37%), Gaps = 10/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +           ++L  E+     +L + E + R     +E+  L+   +     +K+++
Sbjct: 2401 EKQRIQKESEEKDRLQKEAEEKDRLLKEEEEKQRIQKESEEKDRLQKETEEKDRLLKEKE 2460

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             +    +   ++     QK   E     +  ++  R + +     RL + +  K +L K+
Sbjct: 2461 EKQRMQKESEEK--DRLQKEAEEKDRLLKEEEEKRRIQKESEEKDRLQKETEEKDRLLKE 2518

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE--I 537
               ++   +         LQ++ +E   +  +  E Q++   L      QK    ++  +
Sbjct: 2519 EEEKQR--MQKESEEKDRLQKEAEEKDRLLKEEEEKQRIQKELEEKNRLQKETEEKDRLL 2576

Query: 538  HQRLCERGFGELLKQ---LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   ++   + L++   L +++ +        E   + +++  ++      +   +   
Sbjct: 2577 KEEEEKQRIQKELEEKDCLQKELEEKERLQKEAEEKDLLLKEAEEKQ-HFLTKTDEIEGT 2635

Query: 595  KEEIEKQIAQVTAKGEAEKTAILISILHE 623
            KE+IE +   +T     ++  +   +L E
Sbjct: 2636 KEDIEAEEKDLTKNETQKEVEVTKRLLKE 2664


>gi|159131497|gb|EDP56610.1| intracellular protein transport protein (UsoA), putative
           [Aspergillus fumigatus A1163]
          Length = 1061

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 57/159 (35%), Gaps = 19/159 (11%)

Query: 495 PAILQEQYQELADIRYDNNELQKL----WSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           P  +  Q+       + +          +S L      +       I   +      EL+
Sbjct: 620 PQTVGGQFDAGLPDIFFDRTFIDFIKDNFSRLIRAIDREPGLEISVITNGIQRGVSRELV 679

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-------RQKEE-----I 598
             L  ++ +        E++++++R   +Q    +++F+ LS       RQ  E      
Sbjct: 680 DSLRAELEERSQAVQKLESDLLNLRNQLEQEQLEHRKFKDLSISEASKIRQINESLQRNH 739

Query: 599 EKQIAQVTAKGEAEKTAILISI---LHEVHIQIHQIESQ 634
           E+++A++  +    K  +L      L  +  Q+ +  ++
Sbjct: 740 EQELARLEEQHNYAKNELLKQHGDQLRAIDNQLKETSAE 778


>gi|229827071|ref|ZP_04453140.1| hypothetical protein GCWU000182_02455 [Abiotrophia defectiva ATCC
          49176]
 gi|229788689|gb|EEP24803.1| hypothetical protein GCWU000182_02455 [Abiotrophia defectiva ATCC
          49176]
          Length = 329

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 53 FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
             N  K  ++CFS    G  + FL  + G ++ +SV+ L
Sbjct: 42 LFFNSDKNKWHCFSNSSGGGVIQFLMNVEGKTWKDSVKYL 81


>gi|304405925|ref|ZP_07387583.1| replicative DNA helicase [Paenibacillus curdlanolyticus YK9]
 gi|304345168|gb|EFM11004.1| replicative DNA helicase [Paenibacillus curdlanolyticus YK9]
          Length = 454

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 60/182 (32%), Gaps = 12/182 (6%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
            +    L   ++  +    E A+L  ++     L    + +    + ++  Q+++  +  
Sbjct: 2   SMNPDQLTFDRVPPQNLEAEQAILGAVLLQAEALITAMERVKSDDFYSSAHQRIYEAMVE 61

Query: 525 DFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVD--VRQ 576
                +      +   L +R   E       L +L   V  A       +       +R+
Sbjct: 62  LGENNQPIDLVTLTAYLQDRQLLEEAGGITYLAKLANSVPTAANVEYYAQIVEEKSMLRR 121

Query: 577 GYQQALALYKRFRLLSRQ----KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             + A  +                E E++I +++ +  +     +  +L EV  ++  + 
Sbjct: 122 LIRTATQIVSNGYAAEEDVGALLGEAEQKILEISNRRSSSGFVSIRDVLMEVFERVEMLY 181

Query: 633 SQ 634
           SQ
Sbjct: 182 SQ 183


>gi|291277437|ref|YP_003517209.1| replicative DNA helicase [Helicobacter mustelae 12198]
 gi|290964631|emb|CBG40485.1| replicative DNA helicase [Helicobacter mustelae 12198]
          Length = 496

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +  E  +L +++  P+  +    +L    +     + ++    S   ++     + +  
Sbjct: 7   YANLERTILSSILFDPSNFENILDDLQPKDFAYPAHRNIFEVCVSLHKQKNPLDEDFVRN 66

Query: 540 RLCERGF-GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           R+ +R    E   ++      A + +   E   + +++    +LA   R + L+ + +  
Sbjct: 67  RVDKRLVSDEEFVKILATNPIANIEAYIKELKNISLKREL-HSLANTLREQSLNEELDSA 125

Query: 599 E 599
           E
Sbjct: 126 E 126


>gi|218263852|ref|ZP_03477821.1| hypothetical protein PRABACTJOHN_03511 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222451|gb|EEC95101.1| hypothetical protein PRABACTJOHN_03511 [Parabacteroides johnsonii
           DSM 18315]
          Length = 666

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/316 (11%), Positives = 96/316 (30%), Gaps = 36/316 (11%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI---NHI 415
           P    + +   A +   +    +     +   EN        + +              +
Sbjct: 149 PQELSQYFLFDAMQSSELLKKNVFAQTIRDNFENVLGFKKYLQLKRAAEKLQQEWAQQRL 208

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           + +K    Y++    +  +L     T  +     +K  A    +   ++   Q +    K
Sbjct: 209 EAEKEAQEYNELCAQK-DKLTADLNTCIAEQDTKYKYLASVEVEYKRAKDGAQEASALNK 267

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
             ++ + +   ++     +   L+     +    +       L   + +    ++    E
Sbjct: 268 KIQELASKIDDIVKRAATYAEDLKAFVDNIEIDLFLPKLASNLAQEINNILHIKEQLQKE 327

Query: 536 EI----HQRLCE---------RGFGELLKQLDRQVRDAGLWSATTEANIVD----VRQGY 578
                  + L +         +      + +D +   + + +     N  D    + +  
Sbjct: 328 NTGAYPLETLKDVTNKIITYLKDLSLCSESVDEEQVVSHIVAIQNSTNKEDPFGYLDEAE 387

Query: 579 QQALALYKRFR------LLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHE 623
             AL+   +         L RQ++E+E Q++ +      ++T           LI     
Sbjct: 388 VTALSNLVKRTGSNQFIALDRQRQELEIQLSTLDNLRSQKQTLEQTQAGGNEYLIQNYEA 447

Query: 624 VHIQIHQIESQEAMIE 639
              QI +++ QEA ++
Sbjct: 448 AQKQIEKLKGQEAALK 463


>gi|85057287|ref|YP_456203.1| replicative DNA helicase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789392|gb|ABC65124.1| replicative DNA helicase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 447

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 45/150 (30%), Gaps = 11/150 (7%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K +      E ALL  L+ +P  +      + +  + +   Q ++  + +     K   
Sbjct: 5   SKNTPSSPEAERALLGVLLLNPEKITFTLDMIEETDFYSPHHQHIFRAMKTLHETNKQID 64

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +   L      + +  +D     + L  +            Y   +    +   L R
Sbjct: 65  YSSVSAILDNEKLLKKIGNIDYLKELSDLMPSIQHIG------TYIDLI----KETALKR 114

Query: 594 QKEEIEKQIAQVTAKG-EAEKTAILISILH 622
           +  E    +AQ   +  + ++   L     
Sbjct: 115 EIIETVTSLAQKGYENIDVQEYLDLSEEKI 144


>gi|212704073|ref|ZP_03312201.1| hypothetical protein DESPIG_02128 [Desulfovibrio piger ATCC
          29098]
 gi|212672433|gb|EEB32916.1| hypothetical protein DESPIG_02128 [Desulfovibrio piger ATCC
          29098]
          Length = 398

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 28 DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK---GFYYCFSCHVKGDHLSFLSALLGCS 84
           R+       +    CP    +   F     +   G Y C  C  +GD + FL      S
Sbjct: 15 KRKG----PHELAGPCPACGGRD-RFLVWPDRPRGGAYLCRQCGARGDGIQFLRDFCRLS 69

Query: 85 FIESVQRL 92
          + ++ + L
Sbjct: 70 YADACRTL 77


>gi|238782923|ref|ZP_04626951.1| Replicative DNA helicase [Yersinia bercovieri ATCC 43970]
 gi|238794661|ref|ZP_04638267.1| Replicative DNA helicase [Yersinia intermedia ATCC 29909]
 gi|238716126|gb|EEQ08110.1| Replicative DNA helicase [Yersinia bercovieri ATCC 43970]
 gi|238726050|gb|EEQ17598.1| Replicative DNA helicase [Yersinia intermedia ATCC 29909]
          Length = 468

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
            +             +   KL       E ++L  L+          + +A   + +   
Sbjct: 3   AKKPTNNMTEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASNDFFSRPH 62

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           +++++ +       K      + + L ++G    L  +      A L   T  A  +   
Sbjct: 63  RRIFTEMQRLLENSKPIDLITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAY 119

Query: 576 QGYQQALALYKRFRLLSRQKEEI 598
               +  A+ +    ++ +  + 
Sbjct: 120 ADIVRERAVVREMISVANEIADA 142


>gi|303232314|ref|ZP_07319009.1| replicative DNA helicase [Atopobium vaginae PB189-T1-4]
 gi|302481571|gb|EFL44636.1| replicative DNA helicase [Atopobium vaginae PB189-T1-4]
          Length = 477

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 57/187 (30%), Gaps = 16/187 (8%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
           P      ++  K     +    E +LL  +I    ILQ     L +  +     + ++  
Sbjct: 21  PPVNPDGTTQGKALQLPQDVEAEKSLLAAMILSDDILQNCITALKEDDFYLTRHKIIFRA 80

Query: 522 LFSDFVEQKYFLPEEIHQRLCER------GFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           + +   + +   P  +   L         G    L +L         W    E    D  
Sbjct: 81  ILALADKGQTVDPVSLADWLKTTNELDRIGGSATLVELSENSFSLVSWEHHIEILHRDA- 139

Query: 576 QGYQQALALYKRFRLL--------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
              +  +      + L            +  E  + +VT K  A   + L  ++  ++  
Sbjct: 140 -CLRSLILASFNIQKLAFDAPEDTKEVIDSAENMLLEVTNKEVASNYSPLSEVMSSLYTD 198

Query: 628 IHQIESQ 634
           + ++++ 
Sbjct: 199 LTEMQAS 205


>gi|32491248|ref|NP_871502.1| hypothetical protein WGLp499 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166455|dbj|BAC24645.1| dnaB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 465

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 48/141 (34%), Gaps = 3/141 (2%)

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
           +  K    +  + +L K K+       E ++L  L+ +          +    + N   Q
Sbjct: 3   KYTKNNIYKSSKFNLSKFKIPPHSLEAEQSILGGLMLNNNHWDNISDRIDFNDFFNRSHQ 62

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            ++  ++  F   K      + + L ++G    LK +      A +         +    
Sbjct: 63  LIFKEMYKLFEIGKPIDLITVSESLEQKG---QLKLIGGFAYLAEISKNVPSTTNIFAYS 119

Query: 577 GYQQALALYKRFRLLSRQKEE 597
              +  +L ++   +S++  +
Sbjct: 120 EIVRERSLIRKIIEVSQEISD 140


>gi|295402338|ref|ZP_06812293.1| DnaB domain protein helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975611|gb|EFG51234.1| DnaB domain protein helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 430

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 50/146 (34%), Gaps = 13/146 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  ++  P++++E    L    + +    +++  +       +      +   + 
Sbjct: 9   AERLVLACILKDPSLIEETM--LRPGHFIDPRNHEIFRLMLEAKERNEKPDVVTLLMMVG 66

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
              F     +L      + L +   + ++ D  Q + +      R R +  +  E     
Sbjct: 67  GDAF-----RLGGNDYLSDLMNTVVDVSLFDKYQRWVKDFNTIDRARTIVGKFME----- 116

Query: 603 AQVTAKGEAEKTAILISILHEVHIQI 628
            +  +K +      ++  L ++  +I
Sbjct: 117 -ETKSKADIHGLQKMMDELTKLETEI 141


>gi|221483859|gb|EEE22163.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 3093

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 92/272 (33%), Gaps = 17/272 (6%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI--NHIKDQKLRYYYSQA 427
                 +            RE +       ++    E+     +  N  K +  R  ++Q 
Sbjct: 1907 QLRVRVWREKFWTLKRLDREKDRVIGEQVEQLRASEVLFLQMVGENETKLEHEREVHAQE 1966

Query: 428  IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            +     +L      +        +++A   +        +  +  +   + +    E A 
Sbjct: 1967 LARIAAELAG---LQTVCERERAERDAERAEVDVQHSAQLAEARARLADALREKAEEGAA 2023

Query: 488  LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
            L   +        + QE           + L +       E      E + + L E    
Sbjct: 2024 LRRALQEAEANLRRQQEREAEA-RRKHAEGLAAE--RGHREAARDETERLRKELEETC-A 2079

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             LL++++ +  +     +  +    +  +  +Q   L +  +   R+ EE+E+++A    
Sbjct: 2080 ALLREVEERGEERRRRESERDVERAEHAEKQRQICELRENEKKRQREVEELERRVA---- 2135

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                E+ A   ++L ++  Q  Q+++Q++++E
Sbjct: 2136 ----EQRAREAALLRQIENQEDQLQNQQSLLE 2163


>gi|222475326|ref|YP_002563743.1| replicative DNA helicase (dnaB) [Anaplasma marginale str. Florida]
 gi|222419464|gb|ACM49487.1| replicative DNA helicase (dnaB) [Anaplasma marginale str. Florida]
          Length = 492

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 60/192 (31%), Gaps = 21/192 (10%)

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
             S+L            E  L+  ++    I       ++   + +    +++  +    
Sbjct: 12  ESSTLGAIGGLPSNIEAEQMLIGAMLRDNRICDALEDIISADVFFDPLHGRIFDQVLKIN 71

Query: 527 VEQKYFLPEEIH------QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
                     +       + L E G  E L ++  +        +  +A         ++
Sbjct: 72  RRGLAANEISLKMFFDNDEALIECGGAEYLAKIAAKASVVFDIRSVAQAVFD---AHLRR 128

Query: 581 ALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQI 628
            L             Y       +Q E+  +++  + ++G++++     S+L E V  +I
Sbjct: 129 CLIAFGNDVVGNAYDYDSDNPAEQQIEDAAQRLFVLGSRGKSDRNYHKFSVLVEDVRKKI 188

Query: 629 HQIESQEAMIEG 640
              +     ++G
Sbjct: 189 EAAKGGANALQG 200


>gi|170593755|ref|XP_001901629.1| Myosin tail family protein [Brugia malayi]
 gi|158590573|gb|EDP29188.1| Myosin tail family protein [Brugia malayi]
          Length = 1985

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 90/275 (32%), Gaps = 24/275 (8%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            +     E E R     + +A++E  L+   + + + + R       + + +Q       +
Sbjct: 921  EKSHSAEAEGRIQKLNEIKADMERQLEELNDRVAEMEDRNETLNRAKKKSEQEVSDLKRK 980

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
            +       +K    +  +  + RL+Q  +     +     +E            + ++  
Sbjct: 981  NQELEMALRKAESEKQSREQNIRLLQGEMASQDEAVARVNKEKK------QQEEMNRKLM 1034

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--------ERGFGELLKQLD 554
            ++L       N +++L + +     + +  L  E   RL         E       + +D
Sbjct: 1035 EDLQVEEDKVNHMERLKTKIEQQLDDMEEKLEREKRMRLDLEKAKRKVEGELKVAQENMD 1094

Query: 555  RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
               +              D+     +          L +Q +++E +IA++    E E+ 
Sbjct: 1095 EITKQKHDIEQILRRKDADLIATVGKLDGEQSAVNKLQKQIKDLEGRIAELEEDLEQERQ 1154

Query: 615  AI---------LISILHEVHIQI-HQIESQEAMIE 639
            +          L   L E+  ++  Q  +  A IE
Sbjct: 1155 SRGKLDRAKGDLQRELDEITQRLDEQGGATAAQIE 1189


>gi|154502511|ref|ZP_02039571.1| hypothetical protein RUMGNA_00324 [Ruminococcus gnavus ATCC 29149]
 gi|153796907|gb|EDN79327.1| hypothetical protein RUMGNA_00324 [Ruminococcus gnavus ATCC 29149]
          Length = 592

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/449 (9%), Positives = 109/449 (24%), Gaps = 33/449 (7%)

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL- 117
           K  +Y FS +  G  + F+    G SF E+V+ L    G  +   + +  K++  +  + 
Sbjct: 4   KNEWYRFSQNKGGHAIDFMKEFYGLSFAEAVKELLGEEG--VGETNRRTAKEDAGRQKVC 61

Query: 118 ------------IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
                           E+A  +          ++L   +  +G    +     + +    
Sbjct: 62  PIPLPGLELPERNESCEIARKYLIEQ--RKLSEQLVDQMIAKGDIYESKNYHNVVFVGRD 119

Query: 166 RYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
           +     +   +G  E +        +               +F                +
Sbjct: 120 KEQNPRYAAMRGTDEHRYRGEAKGSEKAYGFGHIGTDEKLFVFESPID----FLSYITAV 175

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS--SSFIILVEGYMDV 283
            +        S   +     K +Y     +  +   +  D   N     F+ ++     V
Sbjct: 176 PEEWEKHSYISLGGLSEKAMKQVYMEHKNIRSIYLCLDNDEPGNERCRQFVSMIPEEFCV 235

Query: 284 LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343
             L  A        +     +   + +     R  L        +               
Sbjct: 236 FRLEPAKKDWNECLVAGLHVKEMAKQICLRDNRENLIPVTKMSEVEETVVQWLWYPFIPF 295

Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
               +      +G+        +   A          L + L     E  +         
Sbjct: 296 GKVTLIQGNPGKGK-------TWLAMAIAAYCTNGKELPNALP---IEPFNVLYQTAEDG 345

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           +   +K  +        R  +      +L     +                  +   G +
Sbjct: 346 IADTIKPRLAKCGADMTRVRFINEDEKQLSMTDDRIEKAIRQNNVRLMIMDPIQAYLGAN 405

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLI 492
             + +++ ++       ++ E      ++
Sbjct: 406 VDMNRANEIRPLFRHLSTIAERTGCAIVL 434


>gi|83769660|dbj|BAE59795.1| unnamed protein product [Aspergillus oryzae]
          Length = 1320

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 77/233 (33%), Gaps = 15/233 (6%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R   S A+   L++L  K            ++  +  +     +   +S + K +   +P
Sbjct: 263 RQAQSTALSRELEELKTKLRV-MEKKRTEDREKLKALETLQQERDKFESIIQKLQAKYQP 321

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E + L   +       E+ + +        E+  L   +  +  +      E +  R
Sbjct: 322 QQLEISDLRKKLRESEAQLEEIERIQAEHDSILEMATLDREMAEETADAFRHEVETLKLR 381

Query: 541 LCE--------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-YKRFRLL 591
           + E        R   E L Q       +       E     +R+   +   +  ++   L
Sbjct: 382 VEELQLEAEVLREENEELGQTMSPEEKSSHGWLQMERTNERLREALIRLRDMTQQQESEL 441

Query: 592 SRQKEEIEKQIAQVTA-----KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             Q +E+++ + +  +     +   EK  +  + + ++  Q+      E MIE
Sbjct: 442 KDQIKELQQDLEEYESIKSQYESTKEKLLVAENNVEDLKQQLETALGAEEMIE 494


>gi|295980953|emb|CBJ57201.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 178

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 28/117 (23%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
           I++    I I ++            N +   +          P HD    SF    +   
Sbjct: 3   IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
           +  FS  ++GD + F+  + G SF E++  L+            +  ++ + +    
Sbjct: 47  FKWFSRDIQGDVIDFVQLVKGISFKEALAFLSK------EPFQKEAVQENRERPFYY 97


>gi|238764112|ref|ZP_04625066.1| Replicative DNA helicase [Yersinia kristensenii ATCC 33638]
 gi|238697649|gb|EEP90412.1| Replicative DNA helicase [Yersinia kristensenii ATCC 33638]
          Length = 468

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
            +             +   KL       E ++L  L+          + +A   + +   
Sbjct: 3   AKKPTNNMTEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASNDFFSRPH 62

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           +++++ +       K      + + L ++G    L  +      A L   T  A  +   
Sbjct: 63  RRIFTEMQRLLENSKPIDLITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAY 119

Query: 576 QGYQQALALYKRFRLLSRQKEEI 598
               +  A+ +    ++ +  + 
Sbjct: 120 ADIVRERAVVREMISVANEIADA 142


>gi|195401098|ref|XP_002059151.1| GJ16188 [Drosophila virilis]
 gi|194156025|gb|EDW71209.1| GJ16188 [Drosophila virilis]
          Length = 1916

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 85/286 (29%), Gaps = 27/286 (9%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +K +     +      +            +A     +       K +         + +
Sbjct: 1377 AQKELSTQQDVGSAKILKLERELEETRQQLQATQASQVSESAAREKLKAEAGESESKLLE 1436

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             ++QL  +     +   +   +N +   +      +  + L   +   +   ++ A L T
Sbjct: 1437 HVKQLQDQLARAQAEQQQKSSENEQAIKELLERLDITNAELQHKEQLAREDAQKIADLKT 1496

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWS----------FLFSDFVEQKYFLPEEIHQR 540
            L+    +              N EL  +             +F  F  +     E + ++
Sbjct: 1497 LVEAIQVANANISA------TNAELSTVLEVLQAEKSETAHIFELFEMEADMNAERLIEK 1550

Query: 541  LC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            L   ++   E   QLD Q+          +            A+   ++ R L + K E+
Sbjct: 1551 LQGMKQELQETHSQLDSQLSSNKALEQKLQELQQSEESLQGTAVEAAEQLRQLQQAKAEL 1610

Query: 599  EKQIAQVTAK---------GEAEKTAILISILHEVHIQIHQIESQE 635
            +  + Q  AK             +  +  S + E+  Q+ +++  E
Sbjct: 1611 QDALQQSQAKLAETQQQLQANQSQFELQQSSIQELQQQLQRVKQSE 1656



 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 49/130 (37%), Gaps = 7/130 (5%)

Query: 514  ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            +   L +   +   + +    E +  R       E LKQL+ ++       A+ E+    
Sbjct: 1085 QHAALLAKCETQQQQAQTVQAELLAARAGAAQLQETLKQLNDELLAKQQSYASLESASSG 1144

Query: 574  VRQGYQQALALYKRFRL-LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI---- 628
             R        L ++    L R+ +++++ + ++ A+ E ++T +       +   +    
Sbjct: 1145 QRLELASDNELLQQTNARLERELKDLQQSLDKLRAEAEQKQTQLGELEQLAIERDLALGD 1204

Query: 629  --HQIESQEA 636
               Q E  EA
Sbjct: 1205 AGRQREQLEA 1214


>gi|307171899|gb|EFN63541.1| Transcription initiation factor TFIID subunit 4 [Camponotus
           floridanus]
          Length = 953

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 8/131 (6%)

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
               Q++     S  +E+       +     +     L+++L   V              
Sbjct: 747 TPLQQRIKQIASSHNLEEPNQEVAALISHAVQERLKNLVEKLA--VIAEHRIDLIKVDPR 804

Query: 572 VDVRQGYQQALALYKRFRLLSRQK-----EEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            +V Q  +  L   +    + R+K      E+  + A+  AK E  + A L +   E+  
Sbjct: 805 YEVTQDVRAQLKFLEDLDKVERRKHEEQERELLLRAAKSRAKTEDPEQAKLKAKAKEMQR 864

Query: 627 -QIHQIESQEA 636
            ++ ++  +EA
Sbjct: 865 AEMEELRQREA 875


>gi|304391336|ref|ZP_07373280.1| DNA primase [Ahrensia sp. R2A130]
 gi|303296692|gb|EFL91048.1| DNA primase [Ahrensia sp. R2A130]
          Length = 62

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
           ++ R R L+   + +E+  A+   +         +  L  +  ++      EA+IEGFG 
Sbjct: 1   MHNRARSLAAGLKAVERTFAENWDE-------ESLQRLMALKQELASETGTEALIEGFGL 53

Query: 644 MSGR 647
            SGR
Sbjct: 54  SSGR 57


>gi|297572318|ref|YP_003698092.1| replicative DNA helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932665|gb|ADH93473.1| replicative DNA helicase [Arcanobacterium haemolyticum DSM 20595]
          Length = 451

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 46/151 (30%), Gaps = 7/151 (4%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S+    +        E ++L  ++     L +  + L    +       +++ + S F  
Sbjct: 5   SNSQFERTPPHDIDAERSVLGGMMLSKDALADVSEMLDAQDFYRPAHATIFTVVISLFGA 64

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            +      +   L  +G    L+Q+  +     L S+   A             A+ +R 
Sbjct: 65  GQPADAITVAAELQRQGK---LEQVGGRAVLHDLVSSVPTAANASYYATIVHEQAMLRRL 121

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
                +      Q+   T  G+  +   L  
Sbjct: 122 VETGTRIA----QLGYTTDGGDVAELLNLAQ 148


>gi|152984717|ref|YP_001345758.1| virulence-associated protein E [Pseudomonas aeruginosa PA7]
 gi|150959875|gb|ABR81900.1| virulence-associated protein E [Pseudomonas aeruginosa PA7]
          Length = 127

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 15 IPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND-SKGFY--YCF-SCHV 69
           PI  ++G+     R K N  K  + ACCP HD+K+PS    +   G     C+  C  
Sbjct: 2  TPIDKVLGRLDKVKRVKVN-GKHRWKACCPAHDDKSPSLDVTEAEDGTVLLKCWVGCSA 59


>gi|304390458|ref|ZP_07372411.1| replicative DNA helicase DnaB [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315657666|ref|ZP_07910548.1| replicative DNA helicase DnaB [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304326214|gb|EFL93459.1| replicative DNA helicase DnaB [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492138|gb|EFU81747.1| replicative DNA helicase DnaB [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 458

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 13/177 (7%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            +    ++     L E  +L  +I     + + Y+ L    + ++  + +++ +   +  
Sbjct: 5   DAPPLDRIPPHNILAEQCVLGAMILSKNAIADTYKLLLPSDFYDSRHEIIFNTILDLYAA 64

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN----IVDVRQGYQQALAL 584
                P  +   L +RG    +  LD              A     IV  +   +  +  
Sbjct: 65  GAASDPVTVPAELEKRGQLSRIGGLDYIHTVVHSVPTAANAAYYAQIVRDQATLRGLVEA 124

Query: 585 YKRFRLL---------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             R   L                  ++ +V+ K  +E   +L  +L  V  +I Q +
Sbjct: 125 GTRITQLGYAIDTTDADELINTAHAELDRVSEKRTSEDYRLLSELLTPVLDEIQQTD 181


>gi|296271502|ref|YP_003654134.1| replicative DNA helicase [Thermobispora bispora DSM 43833]
 gi|296094289|gb|ADG90241.1| replicative DNA helicase [Thermobispora bispora DSM 43833]
          Length = 454

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 26/80 (32%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
              S+ +  +        E ++L  ++     + +  + L    +     Q ++  +   
Sbjct: 10  PGGSNSIFERTPPHNIEAEQSVLGGMLLSKDAIADVIEVLRSEDFYRPAHQIIYDVIIDL 69

Query: 526 FVEQKYFLPEEIHQRLCERG 545
           +   +      +   L +RG
Sbjct: 70  YGRGEPADSVTVFDELQKRG 89


>gi|322487917|emb|CBZ23161.1| hypothetical protein LMXM_03_0270 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1372

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 84/228 (36%), Gaps = 12/228 (5%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R    Q +     +L Q+             + AR    +  +++ + ++    +     
Sbjct: 424 RDEARQELAANADELQQRVHAATQQRAELEAQVARLAADRDEARQELAANADDLQQRLHA 483

Query: 481 SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           + ++ A L   +   A    E  QELA     ++  Q+L +        +         +
Sbjct: 484 ATQQRAELEAQVARLAADRDEARQELAAN--ADDLQQRLHAATQQRAELEAQVARLAADR 541

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV---RQGYQQALA-----LYKRFRLL 591
               +       +L +++  A    A  EA +  +   R   +Q LA     L +R    
Sbjct: 542 DEARQELAANADELQQRLHAATQQRAELEAQVARLAADRDEARQELAANADDLQQRLHAA 601

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           ++Q+ E+E Q+A++ A  +  +   L +   E+  ++H    Q A +E
Sbjct: 602 TQQRAELEAQVARLAADRDEAR-QELAANADELQQRLHAATQQRAELE 648



 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 13/221 (5%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           +  ++ RL    Q+     +   R        R +   +   +Q  L      +     E
Sbjct: 357 ADDLQQRLHAATQQRAELEAQVARLAADRDEARQELAANADDLQQRLHAATQQRAE--LE 414

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL------FSDFVEQKYFLPEEIH 538
           A +     +     QE      +++   +   +  + L       +   ++         
Sbjct: 415 AQVARLAADRDEARQELAANADELQQRVHAATQQRAELEAQVARLAADRDEARQELAANA 474

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +R      ++ + + + A L +   EA           A  L +R    ++Q+ E+
Sbjct: 475 DDLQQRLHAATQQRAELEAQVARLAADRDEARQELA----ANADDLQQRLHAATQQRAEL 530

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           E Q+A++ A  +  +   L +   E+  ++H    Q A +E
Sbjct: 531 EAQVARLAADRDEAR-QELAANADELQQRLHAATQQRAELE 570



 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 79/227 (34%), Gaps = 17/227 (7%)

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS--SLVKGKLSKKP 480
           +  QA+   LQ          +   +      +   ++  + +       L     +++ 
Sbjct: 156 HALQAVIQALQHALNAEQATAATAAQSAATELQTSKEENATLKTTLHHLKLNMDAATQQR 215

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +  EA +     +     QE      D++      Q+L +        +         + 
Sbjct: 216 AELEAQVARLAADRDEARQELAANADDLQ------QRLHAATQQRAELEAQVARLAADRD 269

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDV---RQGYQQALA-----LYKRFRLLS 592
              +       +L +++  A    A  EA +  +   R   +Q LA     L +R    +
Sbjct: 270 EARQELAANADELQQRLHAATQQRAELEAQVARLAADRDEARQELAANADDLQQRLHAAT 329

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +Q+ E+E Q+A++ A  +  +   L +   ++  ++H    Q A +E
Sbjct: 330 QQRAELEAQVARLAADRDEAR-QELAANADDLQQRLHAATQQRAELE 375



 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 5/117 (4%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            +   ++           L +R      ++ + + + A L +   EA           A 
Sbjct: 303 LAADRDEARQELAANADDLQQRLHAATQQRAELEAQVARLAADRDEARQELA----ANAD 358

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            L +R    ++Q+ E+E Q+A++ A  +  +   L +   ++  ++H    Q A +E
Sbjct: 359 DLQQRLHAATQQRAELEAQVARLAADRDEAR-QELAANADDLQQRLHAATQQRAELE 414



 Score = 37.2 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 24/210 (11%), Positives = 70/210 (33%), Gaps = 9/210 (4%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R    Q +      L Q+             + AR    +  +++ + ++  + +     
Sbjct: 580 RDEARQELAANADDLQQRLHAATQQRAELEAQVARLAADRDEARQELAANADELQQRLHA 639

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIH 538
           + ++ A L        +  ++ + +     D  ELQ     +  +  E ++     E   
Sbjct: 640 ATQQRAELEA--QVARLAADRDEAVEQKTMDAEELQLFREIVAQERDEAEHWRLDQEAEV 697

Query: 539 QRL--CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +RL        ++L +  R V       A   A +        +     +    ++ ++ 
Sbjct: 698 ERLAAEGEAMRKMLVKEARVVEHGTSALAQRGAELEAQVAVLLRERDEARAQAAVAAEQL 757

Query: 597 EIEKQI-AQVTAKGEAEK--TAILISILHE 623
           +++++I  +     + ++      ++ L E
Sbjct: 758 QLQREIMKKAQESFDKDRACLESRMAQLME 787


>gi|262204257|ref|YP_003275465.1| ATP-dependent chaperone ClpB [Gordonia bronchialis DSM 43247]
 gi|262087604|gb|ACY23572.1| ATP-dependent chaperone ClpB [Gordonia bronchialis DSM 43247]
          Length = 876

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 72/218 (33%), Gaps = 16/218 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++K+I   +   R ++           +  +++    + ++     +++ AL+  + ++H
Sbjct: 326 YRKHIESDAALERRFQTVLVDEPSIEDAISILRGLRERLEVFHGVKIQDGALVAAVTLSH 385

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +    +L + + S   E      +     + E    +      
Sbjct: 386 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDELTRKVTRLEIEEAALSKETD--- 441

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                  L     E   +      + A   ++  R   R+ +E+  ++ ++  + E  + 
Sbjct: 442 -AASKTRLEELRRELADLRAEADARHAQ--WEAERQAIRRVQELRGELERLRHEAEEAER 498

Query: 615 AILIS--------ILHEVHIQIHQIESQEAMIEGFGKM 644
              ++         +  +  ++   E Q A  +G   +
Sbjct: 499 NYDLNRAAELRYGEITALERRLEAAEEQLATRQGRNPL 536


>gi|71733128|gb|AAZ40189.1| nonmuscle myosin II [Aplysia californica]
          Length = 1902

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 76/261 (29%), Gaps = 18/261 (6%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
                     +   +L    K     + + +    Y + +   ++QL Q+         R 
Sbjct: 1332 KRQYEKQMQEISQKLIEVKKKADEDMANNEALEEYKKKVAREMEQLQQQLEESRIQSDRL 1391

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
             K     R  +     +      +         ++      L    ++ +    E     
Sbjct: 1392 EK---SKRKLQAEVDDMTVELESQRSNVSNMDKKQRKFDQMLAEEKSVSERLGLERDTAE 1448

Query: 510  YDNNE-------LQKLWSFL------FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
             ++ E       LQ+L   L           +Q+    E++     +   G+ +  L++ 
Sbjct: 1449 KESREKETKILNLQRLLDELQERADQLDRAKQQQARELEDLIS--SKDDVGKNVHDLEKS 1506

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
             R      A     I D+    Q A     R  +  +      ++ A      E E    
Sbjct: 1507 KRSLDATVAEQRQQIEDLEDELQAAEDAKLRLEVNMQALRAQFERDAAGREDQEEEARKS 1566

Query: 617  LISILHEVHIQIHQIESQEAM 637
            L+  L E+  ++     Q+A+
Sbjct: 1567 LLKQLREMEAELEDERKQKAI 1587



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/318 (12%), Positives = 104/318 (32%), Gaps = 14/318 (4%)

Query: 323  GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382
             D+   +A        L   + G      + ++ +D    ++ Y + A +    +     
Sbjct: 1579 EDERKQKAIAVNARNKLQGDLSGLEQQVEMANKVKD--DAVKQYKRLAAQLKDFQRELDD 1636

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
              + + E      +   +   LE  L      +   +     +++ RD +        + 
Sbjct: 1637 SRISREEMAGAMKDNEKKVKNLEAELLRLQEELASAERAKRNAESERDEMADEIGSSSSS 1696

Query: 443  HSGYGRYWKK-NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
                    ++  AR  + +   +    ++ +    ++K  L+   +   L +  ++ Q+ 
Sbjct: 1697 KQALLDEKRRLEARISELEDELEDEHTNTELMNDKARKAQLQAEQMAAELASERSVSQKL 1756

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--------CERGFGELLKQL 553
              +   +   N E+++  S L      +       +  ++         E      L + 
Sbjct: 1757 ENQRLALERQNKEMKEKLSELEGQSRARTKATIAALEGKIANLEEQLDQEAKERSSLARA 1816

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
            +R++       A    +       Y+  L     R + L RQ +E E+++ +    G+  
Sbjct: 1817 NRKMEKRSKELALQVEDERRSADQYKDQLDKSNNRVKALKRQLDEAEEEVTRAN--GQKR 1874

Query: 613  KTAILISILHEVHIQIHQ 630
            K    +    EV+  + +
Sbjct: 1875 KLQRDLDEQMEVNEXMTR 1892


>gi|332362024|gb|EGJ39826.1| putative zinc finger protein [Streptococcus sanguinis SK49]
          Length = 361

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 16/111 (14%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I++    I I ++  +               Y    P HD    SF    +   +  FS 
Sbjct: 3   IEECKQ-ISILDVANR---LGISCKQVSSRVYEH--PEHD----SFRIFSTTNTFKWFSR 52

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
            ++GD + F+  + G SF E++  L+            +  ++++ +    
Sbjct: 53  DIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAVQEKRERPFYY 97


>gi|256086967|ref|XP_002579653.1| myosin heavy chain [Schistosoma mansoni]
 gi|238665121|emb|CAZ35892.1| myosin heavy chain, putative [Schistosoma mansoni]
          Length = 1937

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 29/258 (11%)

Query: 400  ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
            +R ++E  +K     + D++ +      ++ ++    ++   +        +K  + +  
Sbjct: 888  QRGDMEQRIKELEERLADEEDQAANLTEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 947

Query: 460  KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
            K    R +QS + +         ++   L          +   + L       N L KL 
Sbjct: 948  KDNQIRTLQSEMAQQDEMIGKLNKDKKNLE------EQNKRTQEALQAEEDKVNHLNKLK 1001

Query: 520  SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568
            + L S   E +             E+  ++L    +   E +  L+R  RD        E
Sbjct: 1002 AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQLRRKE 1061

Query: 569  ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT---------AILIS 619
            A I  +   ++    L  +   L R+ +E++ +I ++    EAE+            L S
Sbjct: 1062 AEIGGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 1118

Query: 620  ILHEVHIQIHQIESQEAM 637
             L EV  ++ + +   A 
Sbjct: 1119 ELEEVVDRLEEQDGATAA 1136



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 91/294 (30%), Gaps = 14/294 (4%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              + + Y  +  E    +             + +     ++   L    KN  + I D  
Sbjct: 1431 AEWQKKYADSQAELENAQRDARGQSTEIFRLKAQLEEVHEQMEGLRRENKNLSDEIHDLT 1490

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--SSLVKGKLS 477
             +          + +  ++   E        ++     +Q+    +  Q   S ++ ++ 
Sbjct: 1491 EQLGEGGRSVHEIDKNRRRLEMEKEELQAALEEAESALEQEEAKVQRAQLEMSQIRQEID 1550

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            ++ + +E     T  NH   ++ Q   L        E  ++   L  D  E +  L    
Sbjct: 1551 RRLAEKEEEFEATRKNHQRAMESQQASLEAEAKGKAEAMRVKKKLEQDINELEVSLDGAN 1610

Query: 538  HQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKR 587
              R  +            EL  QL+   R         +A         G    L +   
Sbjct: 1611 RARAEQEKNVKKFQQQVRELQSQLEDDQRQRDDLREQFQAAERRATVLAGELDELRIALD 1670

Query: 588  FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
                SR+  E E+  A   A   + +TA L +   ++   +  +++  +EA  E
Sbjct: 1671 QAERSRKIAEAERAEASDRATEMSTQTASLAAQKRKLEADLAAMQADLEEAANE 1724



 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 79/264 (29%), Gaps = 32/264 (12%)

Query: 402  AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
                  L+  I  +++       +++  ++ +Q  +  + E           A       
Sbjct: 1082 QRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLESELEEVVDRLEEQD-GATAAQSDL 1140

Query: 462  PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
              +R  +   +K  L       E A+          + E   +L        + +K  S 
Sbjct: 1141 TKKREAELMKLKRDLEDTRLQNEQAIATMRKKQSDAINELADQLDQANKAKAKAEKERSQ 1200

Query: 522  LFSDFVEQKYFLPEEIHQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVD 573
              ++  +    +   +  +L              E+  +LD   R+    ++T   +  +
Sbjct: 1201 FKAELDDAHNQVDSIMKAKLNSEKTVKALESQLQEVSVKLDEATRNLNEQASTKARSSQE 1260

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--------------------- 612
            V +  +Q      +   L++ K+++  Q+ +     E E                     
Sbjct: 1261 VSELQRQLEEAESQLSQLNKIKQQLSAQLEEARHSLEDESRMKAKLNGEVRNLTSDLDSL 1320

Query: 613  --KTAILISILHEVHIQIHQIESQ 634
                    S   ++  Q+ +++ +
Sbjct: 1321 RETLEEEQSAKGDLQRQLQKLQGE 1344



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 71/279 (25%), Gaps = 16/279 (5%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                 +  + +    +D     + E       + +  +E    +     K +       +
Sbjct: 1534 KVQRAQLEMSQIRQEIDRRLAEKEEEFEATRKNHQRAMESQQASLEAEAKGKAEAMRVKK 1593

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-SQRLMQSSLVKGKLSKKPSLREA 485
             +   + +L       +       K   + + Q      +L      +  L ++    E 
Sbjct: 1594 KLEQDINELEVSLDGANRARAEQEKNVKKFQQQVRELQSQLEDDQRQRDDLREQFQAAER 1653

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-EIHQRLCER 544
               +        L E    L          +   +       E           +R  E 
Sbjct: 1654 RATVLA----GELDELRIALDQAERSRKIAEAERAEASDRATEMSTQTASLAAQKRKLEA 1709

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEE 597
                +   L+    +A       +  +        ++RQ  +    + K  + L  Q +E
Sbjct: 1710 DLAAMQADLEEAANEAKQADERAKKAMADSARVFEEIRQEQEHTQHVEKARKQLEIQVKE 1769

Query: 598  IEKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIES 633
            +  ++    +            L   + E+  ++   + 
Sbjct: 1770 LMARLEDSESGAMKNGRKAMGKLEQRVRELETELEAEQR 1808


>gi|225856818|ref|YP_002738329.1| DNA primase [Streptococcus pneumoniae P1031]
 gi|225725777|gb|ACO21629.1| DNA primase [Streptococcus pneumoniae P1031]
          Length = 361

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 28/117 (23%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
           I++    I I ++            N +   +          P HD    SF    +   
Sbjct: 3   IEECKQ-ISILDV-----------ANRLGISFKQVSSRVYEHPEHD----SFRIFSTTNT 46

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
           +  FS  ++GD + F+  + G SF +++  L+            +  ++++ +    
Sbjct: 47  FKWFSRDIQGDVIDFVRLVKGISFKDALAFLSE------EPFQKEAVQEKRERPFYY 97


>gi|167467150|ref|ZP_02331854.1| replicative DNA helicase [Yersinia pestis FV-1]
          Length = 412

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
            +             +   KL       E ++L  L+          + +A   + +   
Sbjct: 3   AKKPTNKMTEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASKDFFSRPH 62

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           +++++ +       K      + + L ++G    L  +      A L   T  A  +   
Sbjct: 63  RRIFTEMQRLLENSKPIDLITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAY 119

Query: 576 QGYQQALALYKRFRLLSRQKEEI 598
               +  A+ +    ++ +  + 
Sbjct: 120 ADIVRERAVVREMISVANEIADA 142


>gi|302556316|ref|ZP_07308658.1| ATP-dependent chaperone ClpB [Streptomyces viridochromogenes DSM
           40736]
 gi|302473934|gb|EFL37027.1| ATP-dependent chaperone ClpB [Streptomyces viridochromogenes DSM
           40736]
          Length = 879

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 71/214 (33%), Gaps = 16/214 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++K+I + +   R +++          +  +++    + ++     +++ AL+    ++H
Sbjct: 324 YRKHIEKDAALERRFQQVLVDEPSVEDTISILRGLRERLEIFHGVKIQDTALVSAATLSH 383

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +    +L + + S   E            + E    +      
Sbjct: 384 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDEITRRVTRLEIEEAALSKETD--- 439

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------AQVTA 607
                  L     E   +      + A   ++  R   R+ +E+ +++        +   
Sbjct: 440 -PASKTRLEELRKELADLRSEADAKHAQ--WEAERQAIRRVQELRQELEQVRHEAEEAER 496

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEG 640
             +  + A L    L ++  ++   E Q A  +G
Sbjct: 497 AYDLNRAAELRYGRLQDLERRLAAEEEQLAAKQG 530


>gi|323651100|ref|YP_004243527.1| hypothetical protein pls20_p040 [Bacillus subtilis subsp. natto]
 gi|323461523|dbj|BAJ76940.1| conserved hypothetical protein [Bacillus subtilis subsp. natto]
          Length = 459

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 52  SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111
           S   +  K  +  FS    G+ + F+    G SF ++V  L             K  K++
Sbjct: 43  SLMIDKEKNSFQWFSQGKNGNSIDFVRTFYGKSFRDAVSMLTEK-----DYKHTKEVKEQ 97

Query: 112 KIQTDLIRL 120
             +  +  +
Sbjct: 98  PQKEFVYDI 106


>gi|237843561|ref|XP_002371078.1| plectin, putative [Toxoplasma gondii ME49]
 gi|211968742|gb|EEB03938.1| plectin, putative [Toxoplasma gondii ME49]
          Length = 3686

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 83/280 (29%), Gaps = 23/280 (8%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK--DQKL 420
             +     A E  +  +L   +               +  A          + ++   ++ 
Sbjct: 3200 AQAQQFAASEATLQAALSEAEKKSLACEARMREELQNHVAAASRIKAEEESRMQFVLEQE 3259

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            +   +    ++L++ F++   E S       +    +  +       ++   KG+  ++ 
Sbjct: 3260 KKKVAAEEAEKLRKTFERLWDEESAKMLQAYEAVARQLAEAQ-----RAMHAKGEELEEV 3314

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              REA      ++      E  +    +   + EL +L S       E       +    
Sbjct: 3315 KKREAEARRAALDATQEASEVQELREKLAARDAELSELRSANKEQTEELATVRANQ---- 3370

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIE 599
                       +L  +              +   R+  + Q      R R  +RQ EE E
Sbjct: 3371 ----------TRLAEEAARQREALEKQRDTLEKEREVLRGQVEDAKDRERERARQTEEQE 3420

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              + +  A+ E E     +  L  +  ++   + + A  E
Sbjct: 3421 SCLRRALAEREDEARQKTL-RLQVLEEELETEKHRNASAE 3459



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/355 (10%), Positives = 109/355 (30%), Gaps = 30/355 (8%)

Query: 287  CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
                     ++      E +++ L     ++    D          K ++L L       
Sbjct: 2791 HAFATFRQDAARREEEREQEIQQLRDAMKKVEE--DQRGSLQPEKAKQLELELDAARAET 2848

Query: 347  RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
                       D    +R            ++    +   +R  +        ER  +E 
Sbjct: 2849 DSLRREALELRDAAECLRMQ-LETARADQQQAAAAFEDRLRRAVDEEKEAYFAERRRVEA 2907

Query: 407  HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
                 +  ++ +  R    +A  ++L +  +      +       +  +    +   + L
Sbjct: 2908 THAEALTSLRAELSREQADRAAHEKLAEELKACKCALARE-----RGEKEEAARAWQEEL 2962

Query: 467  MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FS 524
              ++  + +  ++   ++A +         +L     EL        +L++L S     S
Sbjct: 2963 TLATRRQEEQEEEMKNKQAEI--------DVLNAMQDEL------QEQLEELRSRCSQLS 3008

Query: 525  DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
               E+     ++    +      +L + ++ + R A   +   E       +  +Q   L
Sbjct: 3009 AKEEEAPRGRDDEMAYMQ----RQLAETVEEKGRLASELATVREVYAQQSEEQKKQLEDL 3064

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ--IESQEAM 637
                +   R+  ++++++  VT   E ++       L  + ++  +   ++ EA 
Sbjct: 3065 ALSLQASEREVADLQRRLEAVTLDVERQQQEAKAEHLRALEVKQSECMRKAGEAA 3119


>gi|184200066|ref|YP_001854273.1| chaperone ClpB [Kocuria rhizophila DC2201]
 gi|183580296|dbj|BAG28767.1| chaperone ClpB [Kocuria rhizophila DC2201]
          Length = 887

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 66/204 (32%), Gaps = 6/204 (2%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++ I + +   R +++          +  +++    + +   K  + ++AL+       
Sbjct: 319 YRENIEKDAALERRFQQVYVGEPSVEDTVAILRGLKERYEAHHKVQIADSALVAAAQLSA 378

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG---ELLKQ 552
             +  +      I   +    +L   + S   E           RL         E    
Sbjct: 379 RYIPSRQLPDKAIDLIDEAASRLRMEIDSAPEEIDELRRA--VDRLTMEELALEGETDPA 436

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA- 611
              ++       A  EA +  +   ++   A   +   L  + +++  Q  +    G+  
Sbjct: 437 SVERLAALRQDKADKEAELDALNARWEAEKAGLNQVGELKARIDDLRSQAERAQRNGDLG 496

Query: 612 EKTAILISILHEVHIQIHQIESQE 635
           E + +L   +     Q+   ++QE
Sbjct: 497 EASRLLYGEIPNAQKQLDAAQAQE 520


>gi|85713927|ref|ZP_01044916.1| hypothetical protein NB311A_07223 [Nitrobacter sp. Nb-311A]
 gi|85699053|gb|EAQ36921.1| hypothetical protein NB311A_07223 [Nitrobacter sp. Nb-311A]
          Length = 921

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 13  IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH-VK 70
             + +++L+  ++   RR       ++ +  P      P SF  N S G +  F+     
Sbjct: 23  ARVALTSLVQDWLPDGRR----EGSEWISRNPTRGNTRPGSFKINLSTGVWSDFATGEAG 78

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGVP 99
           GD +  L+ L   S +++ + +A   GV 
Sbjct: 79  GDAIDLLAYLNRTSKLDAAREIAQRLGVT 107


>gi|327287208|ref|XP_003228321.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein cut-like 1-like
           [Anolis carolinensis]
          Length = 1662

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 103/286 (36%), Gaps = 22/286 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           +  P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 239 DPSPALDLGQQLQLKVQRMHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 298

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        +K  + ++     +R++Q + +      + +  +   L T +   
Sbjct: 299 EQTLKNQAENLA--LEKEQKLQNDFAERERMLQETQISTASKLEEAEHKMQALQTALEKT 356

Query: 496 --AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +    ++E++ + + L   +   E      E + ++L        L 
Sbjct: 357 QAELFDLKTKYDEETTAKSDEIEMIMTDLERANQRAEVAQREAEALREQLSSANKSLQLA 416

Query: 552 -------QLDRQVRDAGLWSATTEAN--IVDVRQGYQQALALYKRFRLLSR----QKEEI 598
                   +++ +      S   E      ++ Q  +    L      L      Q  ++
Sbjct: 417 TQIQKAPDVEQAIEVLTRSSLEAELAAKEREIAQLVEDVQRLQGNLSKLRENSTSQISQL 476

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           E+Q+    +  +  E+   + +   EV  +++ ++S E A+ +  G
Sbjct: 477 EQQLTAKNSTLKQLEEKLKVQADYDEVKKELNILKSMEFALSDSSG 522


>gi|323344344|ref|ZP_08084569.1| hypothetical protein HMPREF0663_11105 [Prevotella oralis ATCC
          33269]
 gi|323094471|gb|EFZ37047.1| hypothetical protein HMPREF0663_11105 [Prevotella oralis ATCC
          33269]
          Length = 313

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 8  IKDLLIHIPISNLIGQYVD---WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
          ++ +   IPI++    Y+     +  K       Y A  P+ ++   S   +  +  ++ 
Sbjct: 8  LQHIKA-IPIAD----YLHACGIEPAKRYNGYALYHA--PYREDPNASLKVDFRQNLWHD 60

Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAA 94
          +  +  G  +  +  + G S  E++  LA 
Sbjct: 61 YGTNQGGSIIDLVMQMQGSSAYEAMAHLAE 90


>gi|197103210|ref|YP_002128588.1| ATP-dependent protease LA [Phenylobacterium zucineum HLK1]
 gi|196480486|gb|ACG80013.1| ATP-dependent protease LA [Phenylobacterium zucineum HLK1]
          Length = 792

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 54/159 (33%), Gaps = 7/159 (4%)

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQK----LWSFLFSDFVEQKYFLPEEIHQR 540
             +   L  +P  +  + + + +   D  E++     L S             P E+   
Sbjct: 104 FEITEWLEGYP-FIAARGRRITESEADGPEIEARFLHLRSQALEALQLLPQSPPAELVSA 162

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +        L  L     D            VD++    +      +   + R   EI +
Sbjct: 163 VEGASSAATLADLVAAYLDLQPPEKQEILETVDLQARLDRVSTFLAKRLEVLRLTSEIAQ 222

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +  +  + GE ++ A+L   +  +  ++ + + +E ++E
Sbjct: 223 RTRE--SLGERQRQALLREQMAAIQRELGETDDREELVE 259


>gi|291524638|emb|CBK90225.1| DNA primase (bacterial type) [Eubacterium rectale DSM 17629]
          Length = 623

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 15/98 (15%)

Query: 1  MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          MNY +  I      + + + +  Q     +        +       HD    S     +K
Sbjct: 1  MNYTQPQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97
           F +  S    G  + F+    G SF E+VQ L   +G
Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84


>gi|255003309|ref|ZP_05278273.1| replicative DNA helicase [Anaplasma marginale str. Puerto Rico]
          Length = 486

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 60/192 (31%), Gaps = 21/192 (10%)

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
             S+L            E  L+  ++    I       ++   + +    +++  +    
Sbjct: 6   ESSTLGAIGGLPSNIEAEQMLIGAMLRDNRICDALEDIISADVFFDPLHGRIFDQVLKIN 65

Query: 527 VEQKYFLPEEIH------QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
                     +       + L E G  E L ++  +        +  +A         ++
Sbjct: 66  RRGLAANEISLKMFFDNDEALIECGGAEYLAKIAAKASVVFDIRSVAQAVFD---AHLRR 122

Query: 581 ALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQI 628
            L             Y       +Q E+  +++  + ++G++++     S+L E V  +I
Sbjct: 123 CLIAFGNDVVGNAYDYDSDNPAEQQIEDAAQRLFVLGSRGKSDRNYHKFSVLVEDVRKKI 182

Query: 629 HQIESQEAMIEG 640
              +     ++G
Sbjct: 183 EAAKGGANALQG 194


>gi|253575675|ref|ZP_04853011.1| ATP-dependent protease La [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251845013|gb|EES73025.1| ATP-dependent protease La [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 778

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 56/167 (33%), Gaps = 5/167 (2%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            L  G +       E A ++  +++    +   +E  +    + E+  L   + + F   
Sbjct: 82  KLPNGTIRVLVEGMERAEIIEYLDNDEYYEVIAEERPEEETVDPEVDALMRTVLTQFEHY 141

Query: 530 KYFLPE---EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                +   E    + +      L  +        +         +DVR+  ++ L +  
Sbjct: 142 INLSKKVTPETLAAVSDIEEAGRLADVITSHLSLKIKDKQEILETIDVRKRLEKLLDILN 201

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             R +   + +I +++ +   K + E    L   +  +  ++ + E 
Sbjct: 202 NEREVLELERKINQRVKKQMEKTQKEYY--LREQMKAIQKELGEKEG 246


>gi|313669590|ref|YP_004050015.1| DnaB domain-containing protein [Sulfuricurvum kujiense DSM 16994]
 gi|313156787|gb|ADR35462.1| DnaB domain protein helicase domain protein [Sulfuricurvum kujiense
           DSM 16994]
          Length = 407

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 11/145 (7%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E ++L ++I +P+       +L+   +     Q +++ + +     K    E +   L  
Sbjct: 13  ERSILSSIIFNPSDFTYISNQLSREYFYLVAHQNIYTAMINLTAMDKPIDEEFLRSELNR 72

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            G             D  +      AN +     Y Q LA YK  R L     + +K   
Sbjct: 73  IGQ-----------FDERVMIEVLTANPIASITPYIQELAKYKDRRTLLGLSTQFKKAAQ 121

Query: 604 QVTAKGEAEKTAILISILHEVHIQI 628
                  A++  + +     +  ++
Sbjct: 122 AEDPINAAKELIVALEEGMSIDRRL 146


>gi|284929018|ref|YP_003421540.1| primary replicative DNA helicase [cyanobacterium UCYN-A]
 gi|284809477|gb|ADB95182.1| primary replicative DNA helicase [cyanobacterium UCYN-A]
          Length = 444

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 58/187 (31%), Gaps = 21/187 (11%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
              +  +    E ++L  ++  P  +      +    +     Q+++        + K  
Sbjct: 3   NNNIPPQNIEAEESILGGILLDPEAMGRIVDLITPESFYVRAHQEIYEAALKLHSQGKPT 62

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF---- 588
               +   L +    E +  +D+  +      +       D          L ++     
Sbjct: 63  DFLTVKSVLEDHLLLEKIGGIDKLTQLLDRTVSAVNI---DRYAALIMDKYLRRQLISSG 119

Query: 589 -----------RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
                      R L    +E EK+I  +T K        +   + +   ++ ++ +Q A+
Sbjct: 120 HEIVSLGFETTRDLEIVLDESEKKIFGLTQKRPQGGLVPISDTIIQTFNELEKLHNQTAL 179

Query: 638 --IE-GF 641
             IE GF
Sbjct: 180 PGIETGF 186


>gi|315654412|ref|ZP_07907320.1| replicative DNA helicase DnaB [Mobiluncus curtisii ATCC 51333]
 gi|315491447|gb|EFU81064.1| replicative DNA helicase DnaB [Mobiluncus curtisii ATCC 51333]
          Length = 458

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 13/177 (7%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            +    ++     L E  +L  +I     + + Y+ L    + ++  + +++ +   +  
Sbjct: 5   DAPPLDRIPPHNILAEQCVLGAMILSKNAIADTYKLLLPSDFYDSRHEIIFNTILDLYAA 64

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN----IVDVRQGYQQALAL 584
                P  +   L +RG    +  LD              A     IV  +   +  +  
Sbjct: 65  GAASDPVTVPAELEKRGQLSRIGGLDYIHTVVHSVPTAANAAYYAQIVRDQATLRGLVEA 124

Query: 585 YKRFRLL---------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             R   L                  ++ +V+ K  +E   +L  +L  V  +I Q +
Sbjct: 125 GTRITQLGYAIDTTDADELINTAHAELDRVSEKRTSEDYRLLSELLTPVLDEIQQTD 181


>gi|308051536|ref|YP_003915110.1| putative conjugative transfer protein TraI [Legionella longbeachae
            NSW150]
 gi|288859961|emb|CBJ13946.1| putative conjugative transfer protein TraI [Legionella longbeachae
            NSW150]
          Length = 1956

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 55/420 (13%), Positives = 109/420 (25%), Gaps = 61/420 (14%)

Query: 52   SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKK 110
            S   +   G ++ F     G+    +    G S F E++Q  A      +P  + K  +K
Sbjct: 1576 SLKIDLDSGLWHHFETGESGNLFHLIEREKGLSGFKETLQHAAQYIHY-IPEYERKTPQK 1634

Query: 111  EKIQTDLIRLIE----VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSR 166
               + +   + E    +A   F  S          Y +  RG+  +     +       R
Sbjct: 1635 LNEKKE-REVKEGKRQLAQKLFQQSQPIQGTIAEKYLIIHRGLAHYENADLRFC-----R 1688

Query: 167  YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
                +    K      +  +                        +  +G +       L 
Sbjct: 1689 SVYTKTQDGKKHVPALLAFS------------------------KDQQGNIHHVQITKLD 1724

Query: 227  KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
               + K  +          K  +        +         +         EG    LS+
Sbjct: 1725 SYSANKDKSC------DSVKQTFGL------INNYFVNLNHQGKGDIAYFTEGVETGLSI 1772

Query: 287  CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPG------LRAAYKAIDLVLC 340
             QA     V ++        +         +V+C D D                I     
Sbjct: 1773 LQANEHARVYAVLGKANFSNIDP-KDSPKHVVICLDNDGKDTYKYAKNEQTNTIIKAAEK 1831

Query: 341  HLIPGNRVN-FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399
                G +V+  +      D +  +   G+   +KL+   +           +  +    +
Sbjct: 1832 LHDSGIQVSLMIPKKENTDLNDVLVKEGREELKKLLSRLMS-----LDEFKKQCALENKE 1886

Query: 400  ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
               +     KN  + IK+ +     +     RL Q   K I E        ++N      
Sbjct: 1887 PVLKKINQDKNIQSLIKNDRKLNTQNDNEFKRLNQGLIKGIKERVHQRELVERNRTFNKP 1946


>gi|198275329|ref|ZP_03207860.1| hypothetical protein BACPLE_01490 [Bacteroides plebeius DSM
          17135]
 gi|255007930|ref|ZP_05280056.1| DNA primase [Bacteroides fragilis 3_1_12]
 gi|256838363|ref|ZP_05543873.1| DNA primase [Parabacteroides sp. D13]
 gi|298383994|ref|ZP_06993555.1| DNA primase [Bacteroides sp. 1_1_14]
 gi|301311555|ref|ZP_07217482.1| DNA primase [Bacteroides sp. 20_3]
 gi|313145642|ref|ZP_07807835.1| DNA primase [Bacteroides fragilis 3_1_12]
 gi|198271912|gb|EDY96182.1| hypothetical protein BACPLE_01490 [Bacteroides plebeius DSM
          17135]
 gi|256739282|gb|EEU52606.1| DNA primase [Parabacteroides sp. D13]
 gi|298263598|gb|EFI06461.1| DNA primase [Bacteroides sp. 1_1_14]
 gi|300830641|gb|EFK61284.1| DNA primase [Bacteroides sp. 20_3]
 gi|313134409|gb|EFR51769.1| DNA primase [Bacteroides fragilis 3_1_12]
 gi|313158704|gb|EFR58092.1| conserved hypothetical protein [Alistipes sp. HGB5]
          Length = 312

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I++    I I++ +    Y    ++         W   PF  E   SF  N  +  ++ +
Sbjct: 3  IQEAKQ-IKIADYLQSLGYSPVKQQGN-----CLWYKSPFRQETEASFKVNTDRNLWFDY 56

Query: 66 SCHVKGDHL 74
               G+ +
Sbjct: 57 GLGRGGNII 65


>gi|166033512|ref|ZP_02236341.1| hypothetical protein DORFOR_03238 [Dorea formicigenerans ATCC
          27755]
 gi|166026697|gb|EDR45454.1| hypothetical protein DORFOR_03238 [Dorea formicigenerans ATCC
          27755]
          Length = 623

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 15/98 (15%)

Query: 1  MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          MNY +  I      + + + +  Q     +        +       HD    S     +K
Sbjct: 1  MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTIRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97
           F +  S    G  + F+    G SF E+VQ L   +G
Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84


>gi|74025020|ref|XP_829076.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70834462|gb|EAN79964.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 865

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 19/293 (6%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI-K 416
           DP+           ++     + +++ +           +  +  E     +     + K
Sbjct: 446 DPEDRTMVKSI-RMKQHKASVISILEQVRNEYCSLCCAVSLPDLVEAFRRKRQVNIEVAK 504

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              +R    +    RL +  ++ +   +   +  ++  R  + +    + M    V+ K 
Sbjct: 505 SAMIRDALEKQ--KRLFECAERKLEVEANRAKNLQERERLIELRNERLQEMMMEKVRRKR 562

Query: 477 SKKPSLREAALLLTLIN-------HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            +    ++ A     +             +E  + L          Q     L      +
Sbjct: 563 EEDLIAQQNAAARIKLQQERNAEREKEYQRELQERLERAEERTARQQAARDHLLEQRRIR 622

Query: 530 KYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
           +    EE   R+       E   ++ R+  +             + +Q   Q L   +  
Sbjct: 623 RKKNAEERQARIERMAEMQEQQSEILRRKYEERDAKVQLVQEERERKQREAQELLAARAA 682

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI--ESQEAMIE 639
           +      +E+ +Q  Q     E E     +    EV  ++ Q+  + +E + E
Sbjct: 683 KS-----QELREQARQRALLREEEVRQAALGQQQEVENRLRQLTKQREEEVAE 730


>gi|253579813|ref|ZP_04857081.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848812|gb|EES76774.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 770

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 51/154 (33%), Gaps = 30/154 (19%)

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV------RDAGLWSATTE 568
            + L        +E      E + Q L      EL++Q+   +      +   L + T E
Sbjct: 130 HRSLKELFHRYCMENGKVSKELVAQILNIDNVEELVEQIAVNIPLSYQNKQKILEALTLE 189

Query: 569 ANIV-----------------DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
                                D+++  +  +   +R  +L  Q + I +++ +     +A
Sbjct: 190 ERYEVLGAILGNEIEIMQIGRDLQKKVKARIDKNQREYILREQLKLIREELGEDNTADDA 249

Query: 612 EKTAILISILHE-------VHIQIHQIESQEAMI 638
           E+    +  L         +  +I + ++  + +
Sbjct: 250 EEFKKKLQELQAGDEVKEKISKEIERFKNTNSNV 283


>gi|258568786|ref|XP_002585137.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237906583|gb|EEP80984.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 813

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 95/298 (31%), Gaps = 26/298 (8%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             ++            V+          R  E        E+ E     +       D+ 
Sbjct: 84  GDWLVASQIRLVTSWFVQLTAWTLWNPDRLREKMPEQKDTEQTEW--RCEELGY---DRD 138

Query: 420 LRYYYS---QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            R YY      +  R                    + A    ++         S  + ++
Sbjct: 139 ERLYYILDDNRLYRRTNPPIPTPKPAKPKVNSKRGRAAARAAKRRKQAESDVKSEDEEQV 198

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           +     +   + +TL ++ A++++  +            + L   L  + +     L E 
Sbjct: 199 NGDLEYKWECIAVTLADYQALIEKFRKTKDADE------KILRDRLIEEVLPTIEKLEEA 252

Query: 537 IHQRLCERGFGEL-LKQLDRQVRDAGL-----WSATTEANIVDVRQGYQQALALYKRFRL 590
             + +  R    L L+++    R + L           A   ++++   + +A  K+   
Sbjct: 253 QQKEIQRREKELLNLQKMATAKRSSRLADKQERERQELAAAEELKKREAERIAA-KKEHQ 311

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE-GFGKMSGR 647
           L  + E  ++++ ++  + +  K       L E    + ++E+Q  M+E G  ++S R
Sbjct: 312 LKEKIE--KERLYRLMTREQRLKDREEKRRLQE--QHLAEMEAQAKMLETGEARLSER 365


>gi|256827564|ref|YP_003151523.1| primary replicative DNA helicase [Cryptobacterium curtum DSM 15641]
 gi|256583707|gb|ACU94841.1| primary replicative DNA helicase [Cryptobacterium curtum DSM 15641]
          Length = 473

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 39/144 (27%), Gaps = 4/144 (2%)

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
                 +     +    S+    K        E ++L   + +   + E   +L    + 
Sbjct: 2   PQFNTGENGNTLRDPKTSAQASNKQIPHNIEAERSVLAACMLNQDAIDEVAAKLVPENFF 61

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ----LDRQVRDAGLWSATT 567
               Q ++  +              + + L   G  E +      ++       L +  T
Sbjct: 62  RPAHQIIFRSMLDLHARSLPIDQISLAENLRAVGQLEAIGDKSYLVELADNTFALTNWIT 121

Query: 568 EANIVDVRQGYQQALALYKRFRLL 591
            A+IV      +  +    +   L
Sbjct: 122 HADIVKRTSILRDLIYASAQITAL 145


>gi|237836825|ref|XP_002367710.1| hypothetical protein TGME49_004380 [Toxoplasma gondii ME49]
 gi|211965374|gb|EEB00570.1| hypothetical protein TGME49_004380 [Toxoplasma gondii ME49]
          Length = 3085

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 93/272 (34%), Gaps = 17/272 (6%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI--NHIKDQKLRYYYSQA 427
                 +            RE +       ++    E+     +  N  K +  R  ++Q 
Sbjct: 1899 QLRVRVWREKFWTLKRLDREKDRVIGEQVEQLRASEVLFLQMVGENETKLEHEREVHAQE 1958

Query: 428  IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            +     +L      +        +++A   +        +  +  +   + +    E A 
Sbjct: 1959 LARIAAELAG---LQTVCERERAERDAERAEVDVQHSAQLAEARARLADALREKAEEGAA 2015

Query: 488  LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
            L   +        + QE           + L +       E      E + + L E+   
Sbjct: 2016 LRRALQEAEANLRRQQEREAEA-RRKHAEGLAAE--RGHREAARDETERLRKELEEKC-A 2071

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             LL++++ +  +     +  +    +  +  +Q   L +  +   R+ EE+E+++     
Sbjct: 2072 ALLREVEERGEERRRRESERDVERAEHAEKQRQICELRENEKKRQREVEELERRV----- 2126

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               +E+ A   ++L ++  Q  Q+++Q++++E
Sbjct: 2127 ---SEQRAREAALLRQIENQEDQLQNQQSLLE 2155


>gi|332827724|gb|EGK00459.1| hypothetical protein HMPREF9455_03102 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 1174

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/124 (11%), Positives = 39/124 (31%), Gaps = 4/124 (3%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           E       +     E +             +     L+ +   + D           I  
Sbjct: 44  EYAAAAKQMKETRKELERLTKAGKEDSDEFKELEATLESVSSDMTDYKRKMVENTKAIEQ 103

Query: 574 VRQGYQQALALYKRFRL----LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            R+  ++ +   +   +    L ++ +E++ Q+ +       E+   L   L  V  ++ 
Sbjct: 104 NRKTVEEMVKTLRIEDMTMDQLKKRAKELQTQLDKTAEATHPEQYNALDKELKAVKSRMS 163

Query: 630 QIES 633
           +++S
Sbjct: 164 ELDS 167


>gi|332291760|ref|YP_004430369.1| DNA primase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169846|gb|AEE19101.1| DNA primase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 285

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 15 IPISN---LIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71
          I I     ++G +           + + W   PF  E   SF  + S   +Y     + G
Sbjct: 14 ISIVEMLAVLGHF------PKRQSEREAWYLSPFRSETEASFKVSLSLNRWYDHGEGIGG 67

Query: 72 DHLSFLSALLGCSFIESVQRL 92
          + +  +  +  CS   ++  L
Sbjct: 68 NCIDLVCKIKECSVGTALYFL 88


>gi|148658380|ref|YP_001278585.1| ATPase [Roseiflexus sp. RS-1]
 gi|148570490|gb|ABQ92635.1| ATPase AAA-2 domain protein [Roseiflexus sp. RS-1]
          Length = 871

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 83/213 (38%), Gaps = 9/213 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++K+I + +   R ++           +  +++    + +      + +AA++   +   
Sbjct: 321 YRKHIEKDAALERRFQPVMVDPPSVEDTISILRGLKERYETHHGVRITDAAIVAAAVLSD 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLD 554
             + +++     I   +    +L   + S          +++ +R+ +     E LK+  
Sbjct: 381 RYISDRFLPDKAIDLIDEAAARLRMEITS-----DPQELDDLKRRIMQLEIEREALKKEK 435

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            +     L     E    ++++  +   A  +R R    + +++++QI Q   + E  + 
Sbjct: 436 DKASKERLEKLEQELA--NLQEQRRAVEAQLQREREQLARVQQLKEQIDQTRIEIERAQR 493

Query: 615 AILISILHEVH-IQIHQIESQEAMIEGFGKMSG 646
               +   E+   +++ +E Q A IE   + SG
Sbjct: 494 VYDYNKAAELQYGRLNTLERQLAEIEEHMRASG 526


>gi|307320178|ref|ZP_07599598.1| P4 alpha zinc-binding domain protein [Sinorhizobium meliloti AK83]
 gi|306894224|gb|EFN24990.1| P4 alpha zinc-binding domain protein [Sinorhizobium meliloti AK83]
          Length = 409

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 18/120 (15%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
           FI++        +++              KG++   CP    K   F  +  KG + C S
Sbjct: 8   FIEEARG----VSVVDAAFSLGLVG-PTFKGNHAGPCPVCQGKD-RFAISSIKGAWNCRS 61

Query: 67  CHVKG-DHLSFLSALLGCS------FIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDL 117
           C + G D +S ++            F+ +    A + G PLP    +  + +  + +  +
Sbjct: 62  CGIGGKDGISLVAHAGHIDLRSRAGFLTAC---AEVLGKPLPNEAERETEDQIAERRQRI 118


>gi|238760290|ref|ZP_04621433.1| Replicative DNA helicase [Yersinia aldovae ATCC 35236]
 gi|238701492|gb|EEP94066.1| Replicative DNA helicase [Yersinia aldovae ATCC 35236]
          Length = 468

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
            +             +   KL       E ++L  L+          + +A   + +   
Sbjct: 3   AKKPTNNMTAPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASNDFFSRPH 62

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           +++++ +       K      + + L ++G    L  +      A L   T  A  +   
Sbjct: 63  RRIFTEMQRLLENSKPIDLITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAY 119

Query: 576 QGYQQALALYKRFRLLSRQKEEI 598
               +  A+ +    ++ +  + 
Sbjct: 120 ADIVRERAVVREMISVANEIADA 142


>gi|297490519|ref|XP_002698244.1| PREDICTED: cut-like homeobox 1 [Bos taurus]
 gi|296473075|gb|DAA15190.1| cut-like homeobox 1 [Bos taurus]
          Length = 1532

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 99/286 (34%), Gaps = 22/286 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 99  DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 158

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q    +        ++  ++   +   +          KL +     +   L T +   
Sbjct: 159 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQT--LQTALEKT 216

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +I    +E++ + + L   +   E      E + ++L        L 
Sbjct: 217 RTELFDLKTKYDEEITAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 276

Query: 552 Q-------LDRQVRDAGLWSATTEAN--IVDVRQGYQQALALYKRFRLLSR----QKEEI 598
                   +++ +      S   E      ++ Q  +    L      L      Q  ++
Sbjct: 277 SQIQKAPDVEQAIEVLTRSSLEAELAAKEREIAQLVEDVQRLQANLSKLRENSASQISQL 336

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           E+Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 337 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPAEGAG 382


>gi|224026869|ref|ZP_03645235.1| hypothetical protein BACCOPRO_03628 [Bacteroides coprophilus DSM
          18228]
 gi|224020105|gb|EEF78103.1| hypothetical protein BACCOPRO_03628 [Bacteroides coprophilus DSM
          18228]
          Length = 312

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I++    I I++ +    Y    ++         W   PF  E   SF  N  +  ++ +
Sbjct: 3  IQEAKQ-IKIADYLQSLGYSPVKQQGN-----CLWYKSPFRQETEASFKVNTDRNLWFDY 56

Query: 66 SCHVKGDHL 74
               G+ +
Sbjct: 57 GLGRGGNII 65


>gi|257053797|ref|YP_003131630.1| chromosome segregation protein SMC [Halorhabdus utahensis DSM
           12940]
 gi|256692560|gb|ACV12897.1| chromosome segregation protein SMC [Halorhabdus utahensis DSM
           12940]
          Length = 1188

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 13/151 (8%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           + + ++L D R    E Q+L          +K    E+    L      E + +L+  + 
Sbjct: 219 ETRLEQLEDERETALEYQELRDEKEEYEAYRKAAELEDKRDDL--AAVREEIAELEETLE 276

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRF-----RLLSRQKEEIEKQIAQVTAKGEAEK 613
           D        E  +V +     +  A  +R        L R+ EEI+ +IA++    E+ +
Sbjct: 277 DRQRELDEREGKVVRLEDELAELNAEIERKGEDEQLALKREIEEIKGEIARLEDAIESAE 336

Query: 614 TAILISILH------EVHIQIHQIESQEAMI 638
                +         E+  +   I+  EA I
Sbjct: 337 EKRDEAEARRREAFVEIDRKQETIDDLEADI 367



 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 14/221 (6%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  R  Y + +   +++  +      S      ++     +++   +   +  + + +  
Sbjct: 705 EDERQEYREELSG-VEERLEDARDRKSEAADQVREIQAEIERREREREETEERIEQRREE 763

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E   +         + E   ++  +  +  +L+   + L +D  + +     + 
Sbjct: 764 LAEIEDEREAVS------EEMDEIEADIEAVESEIADLEAEIADLEADIEDSQLPELTDE 817

Query: 538 HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + L        + L  LD  + +  L     E  I D+    + A            + 
Sbjct: 818 AESLEGEIDEREDELDDLDAALNELQLEKQYAEDAIDDLHDQIETAQNRKAEQGD---RI 874

Query: 596 EEIEKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQ 634
           EE+   +A   +K   + E  A L + L ++      +  +
Sbjct: 875 EELNGNVADEESKLADKQEAVAELEAELADLKGDREDLREE 915



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/258 (10%), Positives = 80/258 (31%), Gaps = 12/258 (4%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
            +++L  E           E E++  +    R E+    +   +  ++   R      + 
Sbjct: 234 EYQELRDEKEEYEAYRKAAELEDKRDDLAAVREEIAELEETLEDRQRELDEREGKVVRLE 293

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           D L +L  +   +        K+       +         S  + +   +   REA +  
Sbjct: 294 DELAELNAEIERKGEDEQLALKREIEEIKGEIARLEDAIESAEEKRDEAEARRREAFV-- 351

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                   +  + + + D+  D  E +   S + ++  +        + + + E G    
Sbjct: 352 -------EIDRKQETIDDLEADIRETKVEKSSVKAEI-DDLEVDLAAVQEEIEEVGAE-- 401

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            +++  ++          +    D+++   + L   +R     R  E   + + +   + 
Sbjct: 402 FEEVRDELETKKASLEDAKERRNDLQREQDRLLDEARRRSNQQRDLESTIEDLQESIPEL 461

Query: 610 EAEKTAILISILHEVHIQ 627
           +AE   +          +
Sbjct: 462 DAEIADLEEERRKAEQNR 479



 Score = 38.3 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 54/155 (34%), Gaps = 24/155 (15%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           +E   E+A +   +   QK         V +      ++     E    +L  + +  + 
Sbjct: 178 REIIDEIAGVAEFD---QKKAQAFEELEVVEDRIDEADLRIEEKETRLEQLEDERETALE 234

Query: 559 DAGLWSATTE-------ANIVDVRQGY----QQALALYKRFRLLSRQKEE-------IEK 600
              L     E       A + D R       ++   L +      R+ +E       +E 
Sbjct: 235 YQELRDEKEEYEAYRKAAELEDKRDDLAAVREEIAELEETLEDRQRELDEREGKVVRLED 294

Query: 601 QIAQVTAKGE---AEKTAILISILHEVHIQIHQIE 632
           ++A++ A+ E    ++   L   + E+  +I ++E
Sbjct: 295 ELAELNAEIERKGEDEQLALKREIEEIKGEIARLE 329


>gi|169833409|ref|YP_001694581.1| DNA primase [Streptococcus pneumoniae Hungary19A-6]
 gi|168995911|gb|ACA36523.1| DNA primase [Streptococcus pneumoniae Hungary19A-6]
          Length = 361

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 16/111 (14%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
           I++    I I ++  +               Y      H E   SF    +   +  FS 
Sbjct: 3   IEECKQ-ISILDVANR---LGISFKQVSSSVY-----EHHEHD-SFRIFSTTNTFKWFSR 52

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
            ++GD + F+  + G SF E++  L+            +  ++++ +    
Sbjct: 53  DIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAVQEKRERPFYY 97


>gi|22124491|ref|NP_667914.1| replicative DNA helicase [Yersinia pestis KIM 10]
 gi|45440329|ref|NP_991868.1| replicative DNA helicase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51594729|ref|YP_068920.1| replicative DNA helicase [Yersinia pseudotuberculosis IP 32953]
 gi|108809955|ref|YP_653871.1| replicative DNA helicase [Yersinia pestis Antiqua]
 gi|108813510|ref|YP_649277.1| replicative DNA helicase [Yersinia pestis Nepal516]
 gi|145600899|ref|YP_001164975.1| replicative DNA helicase [Yersinia pestis Pestoides F]
 gi|150260634|ref|ZP_01917362.1| replicative DNA helicase [Yersinia pestis CA88-4125]
 gi|153948576|ref|YP_001402719.1| replicative DNA helicase [Yersinia pseudotuberculosis IP 31758]
 gi|162421877|ref|YP_001605331.1| replicative DNA helicase [Yersinia pestis Angola]
 gi|165926684|ref|ZP_02222516.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936488|ref|ZP_02225056.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010424|ref|ZP_02231322.1| replicative DNA helicase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213911|ref|ZP_02239946.1| replicative DNA helicase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167402462|ref|ZP_02307919.1| replicative DNA helicase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419167|ref|ZP_02310920.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426133|ref|ZP_02317886.1| replicative DNA helicase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218927525|ref|YP_002345400.1| replicative DNA helicase [Yersinia pestis CO92]
 gi|229836577|ref|ZP_04456743.1| replicative DNA helicase [Yersinia pestis Pestoides A]
 gi|229840185|ref|ZP_04460344.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842267|ref|ZP_04462422.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229903995|ref|ZP_04519108.1| replicative DNA helicase [Yersinia pestis Nepal516]
 gi|294502385|ref|YP_003566447.1| replicative DNA helicase [Yersinia pestis Z176003]
 gi|21957283|gb|AAM84165.1|AE013659_9 replicative DNA helicase [Yersinia pestis KIM 10]
 gi|45435185|gb|AAS60745.1| replicative DNA helicase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51588011|emb|CAH19615.1| replicative DNA helicase [Yersinia pseudotuberculosis IP 32953]
 gi|108777158|gb|ABG19677.1| primary replicative DNA helicase [Yersinia pestis Nepal516]
 gi|108781868|gb|ABG15926.1| primary replicative DNA helicase [Yersinia pestis Antiqua]
 gi|115346136|emb|CAL19004.1| replicative DNA helicase [Yersinia pestis CO92]
 gi|145212595|gb|ABP42002.1| primary replicative DNA helicase [Yersinia pestis Pestoides F]
 gi|149290042|gb|EDM40119.1| replicative DNA helicase [Yersinia pestis CA88-4125]
 gi|152960071|gb|ABS47532.1| replicative DNA helicase [Yersinia pseudotuberculosis IP 31758]
 gi|162354692|gb|ABX88640.1| replicative DNA helicase [Yersinia pestis Angola]
 gi|165915604|gb|EDR34213.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921307|gb|EDR38531.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990514|gb|EDR42815.1| replicative DNA helicase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166204886|gb|EDR49366.1| replicative DNA helicase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166963161|gb|EDR59182.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048150|gb|EDR59558.1| replicative DNA helicase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054844|gb|EDR64646.1| replicative DNA helicase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679765|gb|EEO75868.1| replicative DNA helicase [Yersinia pestis Nepal516]
 gi|229690577|gb|EEO82631.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696551|gb|EEO86598.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229706261|gb|EEO92269.1| replicative DNA helicase [Yersinia pestis Pestoides A]
 gi|262360468|gb|ACY57189.1| replicative DNA helicase [Yersinia pestis D106004]
 gi|262364414|gb|ACY60971.1| replicative DNA helicase [Yersinia pestis D182038]
 gi|294352844|gb|ADE63185.1| replicative DNA helicase [Yersinia pestis Z176003]
 gi|320013816|gb|ADV97387.1| replicative DNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 468

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
            +             +   KL       E ++L  L+          + +A   + +   
Sbjct: 3   AKKPTNKMTEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASKDFFSRPH 62

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           +++++ +       K      + + L ++G    L  +      A L   T  A  +   
Sbjct: 63  RRIFTEMQRLLENSKPIDLITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAY 119

Query: 576 QGYQQALALYKRFRLLSRQKEEI 598
               +  A+ +    ++ +  + 
Sbjct: 120 ADIVRERAVVREMISVANEIADA 142


>gi|256086965|ref|XP_002579652.1| myosin heavy chain [Schistosoma mansoni]
 gi|238665120|emb|CAZ35891.1| myosin heavy chain [Schistosoma mansoni]
          Length = 1839

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 29/258 (11%)

Query: 400  ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
            +R ++E  +K     + D++ +      ++ ++    ++   +        +K  + +  
Sbjct: 790  QRGDMEQRIKELEERLADEEDQAANLTEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 849

Query: 460  KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
            K    R +QS + +         ++   L          +   + L       N L KL 
Sbjct: 850  KDNQIRTLQSEMAQQDEMIGKLNKDKKNLE------EQNKRTQEALQAEEDKVNHLNKLK 903

Query: 520  SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568
            + L S   E +             E+  ++L    +   E +  L+R  RD        E
Sbjct: 904  AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQLRRKE 963

Query: 569  ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT---------AILIS 619
            A I  +   ++    L  +   L R+ +E++ +I ++    EAE+            L S
Sbjct: 964  AEIGGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 1020

Query: 620  ILHEVHIQIHQIESQEAM 637
             L EV  ++ + +   A 
Sbjct: 1021 ELEEVVDRLEEQDGATAA 1038



 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 91/294 (30%), Gaps = 14/294 (4%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              + + Y  +  E    +             + +     ++   L    KN  + I D  
Sbjct: 1333 AEWQKKYADSQAELENAQRDARGQSTEIFRLKAQLEEVHEQMEGLRRENKNLSDEIHDLT 1392

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--SSLVKGKLS 477
             +          + +  ++   E        ++     +Q+    +  Q   S ++ ++ 
Sbjct: 1393 EQLGEGGRSVHEIDKNRRRLEMEKEELQAALEEAESALEQEEAKVQRAQLEMSQIRQEID 1452

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            ++ + +E     T  NH   ++ Q   L        E  ++   L  D  E +  L    
Sbjct: 1453 RRLAEKEEEFEATRKNHQRAMESQQASLEAEAKGKAEAMRVKKKLEQDINELEVSLDGAN 1512

Query: 538  HQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKR 587
              R  +            EL  QL+   R         +A         G    L +   
Sbjct: 1513 RARAEQEKNVKKFQQQVRELQSQLEDDQRQRDDLREQFQAAERRATVLAGELDELRIALD 1572

Query: 588  FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
                SR+  E E+  A   A   + +TA L +   ++   +  +++  +EA  E
Sbjct: 1573 QAERSRKIAEAERAEASDRATEMSTQTASLAAQKRKLEADLAAMQADLEEAANE 1626



 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 79/264 (29%), Gaps = 32/264 (12%)

Query: 402  AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
                  L+  I  +++       +++  ++ +Q  +  + E           A       
Sbjct: 984  QRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLESELEEVVDRLEEQD-GATAAQSDL 1042

Query: 462  PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
              +R  +   +K  L       E A+          + E   +L        + +K  S 
Sbjct: 1043 TKKREAELMKLKRDLEDTRLQNEQAIATMRKKQSDAINELADQLDQANKAKAKAEKERSQ 1102

Query: 522  LFSDFVEQKYFLPEEIHQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVD 573
              ++  +    +   +  +L              E+  +LD   R+    ++T   +  +
Sbjct: 1103 FKAELDDAHNQVDSIMKAKLNSEKTVKALESQLQEVSVKLDEATRNLNEQASTKARSSQE 1162

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--------------------- 612
            V +  +Q      +   L++ K+++  Q+ +     E E                     
Sbjct: 1163 VSELQRQLEEAESQLSQLNKIKQQLSAQLEEARHSLEDESRMKAKLNGEVRNLTSDLDSL 1222

Query: 613  --KTAILISILHEVHIQIHQIESQ 634
                    S   ++  Q+ +++ +
Sbjct: 1223 RETLEEEQSAKGDLQRQLQKLQGE 1246



 Score = 37.2 bits (84), Expect = 8.9,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 71/279 (25%), Gaps = 16/279 (5%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                 +  + +    +D     + E       + +  +E    +     K +       +
Sbjct: 1436 KVQRAQLEMSQIRQEIDRRLAEKEEEFEATRKNHQRAMESQQASLEAEAKGKAEAMRVKK 1495

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-SQRLMQSSLVKGKLSKKPSLREA 485
             +   + +L       +       K   + + Q      +L      +  L ++    E 
Sbjct: 1496 KLEQDINELEVSLDGANRARAEQEKNVKKFQQQVRELQSQLEDDQRQRDDLREQFQAAER 1555

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-EIHQRLCER 544
               +        L E    L          +   +       E           +R  E 
Sbjct: 1556 RATVLA----GELDELRIALDQAERSRKIAEAERAEASDRATEMSTQTASLAAQKRKLEA 1611

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEE 597
                +   L+    +A       +  +        ++RQ  +    + K  + L  Q +E
Sbjct: 1612 DLAAMQADLEEAANEAKQADERAKKAMADSARVFEEIRQEQEHTQHVEKARKQLEIQVKE 1671

Query: 598  IEKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIES 633
            +  ++    +            L   + E+  ++   + 
Sbjct: 1672 LMARLEDSESGAMKNGRKAMGKLEQRVRELETELEAEQR 1710


>gi|153852780|ref|ZP_01994217.1| hypothetical protein DORLON_00199 [Dorea longicatena DSM 13814]
 gi|149754422|gb|EDM64353.1| hypothetical protein DORLON_00199 [Dorea longicatena DSM 13814]
          Length = 623

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 15/93 (16%)

Query: 1  MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          M Y +  I        + + +  Q     +        +       HD    S     +K
Sbjct: 1  MQYTQAQIDRA-NAASLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
           F +  S    G  + F+    G SF E+VQ L
Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLL 79


>gi|149608333|ref|XP_001510226.1| PREDICTED: similar to A kinase (PRKA) anchor protein (yotiao) 9,
           partial [Ornithorhynchus anatinus]
          Length = 1089

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/304 (9%), Positives = 91/304 (29%), Gaps = 33/304 (10%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R   + A  +++   L   +     E ++       +  +L   +      +   +L   
Sbjct: 607 RELEREAALEVLKARLAEGEERHSTELKDHGLAREKQLEDLREQMARRDREVASARLELA 666

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            ++    +  +  ++ +       +          +       +++ L +    +   ++
Sbjct: 667 QARQRERQSSEEVRRLMGSVEELQKRQHAGGWAEQEAQRRLEQLRAELEETHGQQIVQMK 726

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNN--ELQKLWSFLFSDFVEQKYFLPEEIHQR- 540
           +   L  L    A+      EL      +    + +L + L     ++     + + +R 
Sbjct: 727 KELTLQHLAQTEALRARHQAELERAAARDPVPPIDELRARLHEALAQRDGLSRDLVRERE 786

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL------------------ 582
           +       L ++L     +  L          D+ +   +AL                  
Sbjct: 787 VASAEKSTLERRLGELQAELDLARERGRQAGADLERRLAEALGAAEDLKAQAATAAEVTR 846

Query: 583 -----------ALYKRFRLLSRQKEEIEKQIAQV-TAKGEAEKTAILISILHEVHIQIHQ 630
                          +  +L R+K+ +  ++A+   A  ++ +T +L     E+      
Sbjct: 847 ELQAKHEAEVTNYRIKLEMLEREKDAVLDRMAEAQEADLDSLRTQLLFRHEEELSRLRED 906

Query: 631 IESQ 634
           +E +
Sbjct: 907 LEGE 910



 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/303 (10%), Positives = 79/303 (26%), Gaps = 28/303 (9%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
                           + E+     +  K+E   +     +                +D 
Sbjct: 698 WAEQEAQRRLEQLRAELEETHGQQIVQMKKELTLQHLAQTEALRARHQAELERAAA-RDP 756

Query: 419 K-----LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                 LR    +A+  R   L +  + E            R   +      L +    +
Sbjct: 757 VPPIDELRARLHEALAQR-DGLSRDLVREREVASAEKSTLERRLGELQAELDLARERGRQ 815

Query: 474 GKLSKKPSLREA---------ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                +  L EA                    +  +   E+ + R     L++    +  
Sbjct: 816 AGADLERRLAEALGAAEDLKAQAATAAEVTRELQAKHEAEVTNYRIKLEMLEREKDAVLD 875

Query: 525 DFVEQKYFLPEEIHQRL---CERGFGELLKQLD-----RQVRDAGLWSATTEANIVDVRQ 576
              E +    + +  +L    E     L + L+        R         E  +  +R 
Sbjct: 876 RMAEAQEADLDSLRTQLLFRHEEELSRLREDLEGEHRANVARLKESLGLRYEQQLEGLRA 935

Query: 577 GYQQALALYK--RFRLLSRQKEEIEK--QIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             ++ +   +  +  L++RQ + + +   +  V       +       L E+  ++  + 
Sbjct: 936 ETRRQVEALQMEKDGLVTRQNQLLLELSALRDVQQSPGTSEAEETARRLRELQKEVEGLR 995

Query: 633 SQE 635
             E
Sbjct: 996 RGE 998


>gi|145301310|ref|YP_001144150.1| hypothetical protein ASA_P4G102 [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|142856087|gb|ABO92402.1| hypothetical protein ASA_P4G102 [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 102

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 15/93 (16%)

Query: 1  MNYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          M Y ++ I        + + +  Q     R                HD    S     +K
Sbjct: 1  MYYTQEQIDRA-NQADLVSFLQSQGEQLTRAGNEYRWKR-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
            +Y  S    G  + F+    G SF E+V+ +
Sbjct: 49 --WYRHSQSKGGAPIDFVMEFFGKSFTEAVELI 79


>gi|73953673|ref|XP_546179.2| PREDICTED: similar to Discs, large homolog 5 (Placenta and prostate
           DLG) (Discs large protein P-dlg) [Canis familiaris]
          Length = 1885

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/331 (10%), Positives = 91/331 (27%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +L       +     
Sbjct: 267 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNSDLSRLEQLEEENQRLLKQTEMLTQQRDTA 326

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E                      
Sbjct: 327 IQLQHQCALSLRRFEAIH--HELNKATAQNKDLQWEMELLQSEMTELRTMQAKMAKESEK 384

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
               +D      Y   + +R Q + +    +        K  +   ++K  S+ +     
Sbjct: 385 YKEERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAASEEMEALRQ 443

Query: 472 VK--GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +K    +    + +EA LL                         + + L   L     E 
Sbjct: 444 IKDTVTMDAGRANKEAELLR-----------------------KQCKALCQELKEALQEA 480

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 481 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 537

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+   +   +  +   L++ 
Sbjct: 538 DVSRELKELKEQME--SQLEKEARFRQLMAH 566


>gi|196248040|ref|ZP_03146742.1| ATP-dependent chaperone ClpB [Geobacillus sp. G11MC16]
 gi|196212824|gb|EDY07581.1| ATP-dependent chaperone ClpB [Geobacillus sp. G11MC16]
          Length = 861

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 78/218 (35%), Gaps = 17/218 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI +     R +++          +  +++    + ++     + + AL+   +   
Sbjct: 319 YRQYIEKDPALERRFQQVLVEEPSVEDTISILRGLKERYEVHHGVKIHDRALVAAAVLSD 378

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL------ 549
             + +++     I   +     + + + S   E    +   +   + E    +       
Sbjct: 379 RYISDRFLPDKAIDLVDEACATIRTEMESMPSELDEVMRRVMQLEIEEAALSKETDEASR 438

Query: 550 --LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             L+ L  ++ +    +   +A     ++   +   + +      R+ EE E        
Sbjct: 439 TRLEALQNELANLRERANAMKAKWQQEKEALDRVRRVREELERAKRELEEAE-------N 491

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGKM 644
             +  K A L    + ++  Q+ Q+E QEA  +G GK+
Sbjct: 492 DYDLNKAAELRHGRIPQLEKQLKQLE-QEASGQGEGKL 528


>gi|194217372|ref|XP_001504251.2| PREDICTED: myosin XVIIIA isoform 4 [Equus caballus]
          Length = 2002

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 85/276 (30%), Gaps = 15/276 (5%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             +      ++  VD   KR  +        E+       +   +   D        Q ++
Sbjct: 1370 EWRLKYERAVREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADSDESQRALQQLK 1429

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNA---RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             + Q+L  +             +N    + + +             + KL ++   RE  
Sbjct: 1430 KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEEAQREKLQREKLQREKD 1489

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +L         L E +     +   + ++      + S   E +    +E          
Sbjct: 1490 ML---------LAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKV 1540

Query: 547  GELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
             + L+ L+ +V+D           I     ++Q   Q    Y+  + + R+K E+E ++ 
Sbjct: 1541 KKQLRDLEAKVKDQEEELDEQAGTIQMLEQLKQMEVQLEEEYEDKQKVLREKRELESKLT 1600

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             ++ +           +  ++      +   + M++
Sbjct: 1601 TLSDQVNQRDFESEKRLRKDLKRTKALLADAQIMLD 1636



 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/286 (10%), Positives = 79/286 (27%), Gaps = 16/286 (5%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R   +    +   + L       K++ E +  +      ++        +    + 
Sbjct: 1472 EEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQES 1531

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                    ++ +L+ L  K   +                 K    +L +    K K+ ++
Sbjct: 1532 KDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQLKQMEVQLEEEYEDKQKVLRE 1591

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEI 537
                E+ L            E  + L         L      +               ++
Sbjct: 1592 KRELESKLTTLSDQVNQRDFESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQL 1651

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +L E  F          V+         E   + +    +   AL ++   L R+K E
Sbjct: 1652 KNQLEESEFT-----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNE 1706

Query: 598  IEKQIAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQ 634
            I+ ++ +                 + +  ++ ++++  Q+ +   +
Sbjct: 1707 IQNRLEEDQEDMNELMKKHKAAVAQASRDLAQMNDLQAQLEEANKE 1752



 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1742 LQAQLEEANKEKQELQEKLQT--LQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFER 1798

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1799 TQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1858


>gi|119498127|ref|XP_001265821.1| cell polarity protein (Tea1), putative [Neosartorya fischeri NRRL
            181]
 gi|119413985|gb|EAW23924.1| cell polarity protein (Tea1), putative [Neosartorya fischeri NRRL
            181]
          Length = 1496

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 78/240 (32%), Gaps = 29/240 (12%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-- 483
            + ++ +L+   ++       +       A        S+R  +      +       R  
Sbjct: 1105 RELKSKLENQQREAGALAIQHATLKDLLAERGVSYTDSRRSPRLESPGSRFGTPEQTRLR 1164

Query: 484  --EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS------DFVEQKYFLPE 535
              E  L  +L  H  +        +  +  +   ++    L +       +V+    + +
Sbjct: 1165 ELEQQLSASLKAHEELRASFE---SREQEADRAYREKLEQLENDYQSAVHYVKGTEKMLK 1221

Query: 536  EIHQRL-----CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             +   L             L+   R +  A    +   A     R   QQ+++  ++   
Sbjct: 1222 RMKDELTRYKAQNAKIQADLEAAQRSISQASALGSEAPAEWESERSKLQQSISDLQQDTA 1281

Query: 591  -----LSRQKEEIEKQIAQVTAKGEAEKTA------ILISILHEVHIQIHQIESQEAMIE 639
                 L  Q  ++++ ++   A+ +  ++        LI+   +   ++ Q++ + A++E
Sbjct: 1282 SSIANLESQIAKLKEDLSAAEAEKDKSRSEYESVKQELIAAAEKNRAELEQLKQENALLE 1341


>gi|225619574|ref|YP_002720831.1| DNA helicase, DnaB type [Brachyspira hyodysenteriae WA1]
 gi|225214393|gb|ACN83127.1| DNA helicase, DnaB type [Brachyspira hyodysenteriae WA1]
          Length = 466

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 4/146 (2%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E +LL  ++ +   +     ++    + +   + L+  +            E   + L 
Sbjct: 10  AEESLLGAMLQNSQAVSVAISKIKSTDFYSERNRMLYESILEMHNRGIAINAETTLRYLK 69

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           E G  E + Q D    +A L             + Y + +A     R L    ++I+K  
Sbjct: 70  ENGLFEKIIQND----EAYLIRIIDGTPFHQNAKYYAEIIAEKSLLRDLITVSQDIQKSA 125

Query: 603 AQVTAKGEAEKTAILISILHEVHIQI 628
            +       E        + EV  + 
Sbjct: 126 YEAKDAETKEIADFAEKKIFEVTQRR 151


>gi|188989952|ref|YP_001901962.1| hypothetical protein xccb100_0556 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167731712|emb|CAP49890.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris]
          Length = 942

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 72/227 (31%), Gaps = 19/227 (8%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +  Y   + DR     Q  + +     R+     R    +  +++L      +  L  
Sbjct: 427 AEQRGYLLELLDR-----QPQVDKAQWQRRFDAMRQRFLGLRAQARQLAPDLSQRPALEA 481

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +    E  L    ++H A   + YQ           L   W                ++ 
Sbjct: 482 ELRDTERKLKALELSHHASSLQAYQRARRQLSAQQNLLAQWQSDLESMR--PVVEDSDLF 539

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA----------LALYKRF 588
           +R+   GF +        +       +    +   +R    Q            A  +  
Sbjct: 540 RRIEFEGFDQATGDEAEFIGLVEQVESELRGHYEQIRTAVSQIEATLATTPARFAALRLQ 599

Query: 589 RLLSRQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIES 633
             +++ + + +  + ++ ++G    ++ A L++   E+  ++ ++++
Sbjct: 600 VAITQAQADYQALLERLKSQGVESPDQYAALVARSDELQKELKRLDA 646


>gi|126656761|ref|ZP_01727975.1| ClpB protein [Cyanothece sp. CCY0110]
 gi|126621981|gb|EAZ92689.1| ClpB protein [Cyanothece sp. CCY0110]
          Length = 872

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 76/206 (36%), Gaps = 14/206 (6%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R +++   +      +  +++    + ++     + + AL+   +   
Sbjct: 321 YRKYIEKDAALERRFQEVLVNEPNVVDTISILRGLKERYEVHHGVKIADTALVAAAMLSN 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      + +   +      +   ++ R
Sbjct: 381 RYISDRFLPDKAIDLVDESAAKLKMEITSKPEELDEVDRKILQLEMERLSLQKEEDEVSR 440

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------QIAQVTAK 608
           +           E  + D+++   Q  A ++  + +  Q  E+++       +I Q    
Sbjct: 441 E------RLEKLEKELADLKEEQSQLNAQWQAEKEVIDQIRELKETIDQVNLEIQQAERD 494

Query: 609 GEAEKTAIL-ISILHEVHIQIHQIES 633
            +  K A L    L ++  Q+  +ES
Sbjct: 495 YDLNKAAELRYGKLTDLQRQVKDLES 520


>gi|114319748|ref|YP_741431.1| XRE family transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226142|gb|ABI55941.1| transcriptional regulator, XRE family [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 1381

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 45/166 (27%), Gaps = 6/166 (3%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
                  ++    K+       E A+L  L+       +    + +  +   + + +W  
Sbjct: 2   AQTESSSAATDALKVPPHSIEAEQAVLGGLMLDNNAWDQVADRVTEEDFYRRDHRLIWRA 61

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           + +   E +      I + L           L+       L +  ++       + Y   
Sbjct: 62  IATLADEGQPVDAVTISEWLKNHEL------LEAAGGMGYLGALASDTPSAANIKAYADI 115

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +      R L R   ++     Q   +            + ++  Q
Sbjct: 116 VRERSVMRQLIRVGTDVVDSAFQPEGRDSKTLLDEAERRIFQIAEQ 161


>gi|281337674|gb|EFB13258.1| hypothetical protein PANDA_015425 [Ailuropoda melanoleuca]
          Length = 1113

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 99/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 1   DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 60

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 61  EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 120

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +I    +E++ + + L   +   E      E + ++L        L   
Sbjct: 121 ELFDLKTKYDEEITAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 180

Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 181 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 240

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 241 QLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 284


>gi|238752149|ref|ZP_04613631.1| Replicative DNA helicase [Yersinia rohdei ATCC 43380]
 gi|238709622|gb|EEQ01858.1| Replicative DNA helicase [Yersinia rohdei ATCC 43380]
          Length = 468

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
            +             +   KL       E ++L  L+          + +A   + +   
Sbjct: 3   AKKPTNNMTEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASKDFFSRPH 62

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           ++++S +       K      + + L ++G    L  +      A L   T  A  +   
Sbjct: 63  RRIFSEMQRLLENSKPIDLITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAY 119

Query: 576 QGYQQALALYKRFRLLSRQKEEI 598
               +  A+ +    ++ +  + 
Sbjct: 120 ADIVRERAVVREMISVANEIADA 142


>gi|221633248|ref|YP_002522473.1| RecF/RecN/SMC N terminal domain-containing protein [Thermomicrobium
           roseum DSM 5159]
 gi|221155751|gb|ACM04878.1| RecF/RecN/SMC N terminal domain protein [Thermomicrobium roseum DSM
           5159]
          Length = 850

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 88/254 (34%), Gaps = 21/254 (8%)

Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
           +      ++              ++DQ  R      A R +L QL ++         R  
Sbjct: 183 HDERTRSEQMLAALREQAAQAPALRDQVTRLENALDAQRAQLAQLREQLKLRQERLYRLQ 242

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
            +  R+R++      L++    + +   +   R A     L   P  ++ + QEL  ++ 
Sbjct: 243 LEVERYRERSARHAELVRECAKRHEEKDRLEQRLATQQAILQRAPE-IERRAQELDAVQR 301

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
           + +EL ++ +              + I Q L +R      K+ +R VR   L +   E  
Sbjct: 302 ELDELGRIAAE------------RQRIQQELLQRERDLESKRRERAVRKQALETRIKETE 349

Query: 571 IV-----DVRQGYQQALALYKRFRLLSRQKEEIEKQI--AQVTAKGEAEKTAILISILHE 623
                  +++    Q      R   L  ++ E++ Q    +            L   + E
Sbjct: 350 QALAQRPELQARLVQIDEELARLATLRERQAELDNQKVQREARRGELRALANQLRQQMKE 409

Query: 624 VHIQIHQIESQEAM 637
           +  Q+ Q+ + +A+
Sbjct: 410 LQEQLQQLSAIDAV 423



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 66/214 (30%), Gaps = 14/214 (6%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
           + +T      +  +   R    +          L   K  ++   R   L   L     +
Sbjct: 429 RPLTPEERARQEAQVRERGAQLRSTFDASRNEDLQLAKELEEIQQRRRELDAELRREGDL 488

Query: 498 LQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             E      +L  +     EL +L   L       + F PE        +   + L  L 
Sbjct: 489 QAEGGKIRGDLEKLARQERELAQLRREL-EQLSRSEEFDPEYRSLADEVQKLRQQLTALV 547

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG-EAEK 613
               +           +  VRQ   Q        + L+ +  E+E++IA +  +    E 
Sbjct: 548 -FDPERREALERRRRELEPVRQELLQLRDARTAVQHLAERLSELEREIATLETERVSLEA 606

Query: 614 TAILI----SILHEVHIQIHQI----ESQEAMIE 639
                      L  VH ++ Q+    +S+E +IE
Sbjct: 607 ELAAWSPPERELETVHSELEQLKQREQSEEELIE 640


>gi|289622727|emb|CBI50996.1| unnamed protein product [Sordaria macrospora]
          Length = 1436

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 83/274 (30%), Gaps = 6/274 (2%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++       +     +    +   +    +      + + +++    +   +  D     
Sbjct: 460 LKTKFAQEQQDGDDGATEAHEKAIQELKASHESAIAELQKKIDELSSSQAANDADATKLE 519

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                I +   +L        S       K A     +     +        + + K + 
Sbjct: 520 ALESQIAELKAKLEASEQNAESAKAELESKVASFASLEAKVADMETELSAAKEEASKAAA 579

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
             A L   +       + Q   +A ++ +    ++L   +     E   +  E    +L 
Sbjct: 580 THAELQKRIDELTEETKSQEAIIAKLKKETASAEELQKRIEQLTEENTTY--EATLAKLK 637

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           E       + L +++++    +   EA I  ++     +  L KR   LS   ++ E  I
Sbjct: 638 EETSAA--EDLQKRIQELEAEAKDKEATIAQLKDTTTGSDELQKRIDELSNDSKDNEATI 695

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            Q+  K E      L   + E+  +    E+  A
Sbjct: 696 TQL--KEEVAAAEELQKRIQELTEEAKTKEATIA 727


>gi|313679014|ref|YP_004056753.1| metal dependent phosphohydrolase [Oceanithermus profundus DSM
           14977]
 gi|313151729|gb|ADR35580.1| metal dependent phosphohydrolase [Oceanithermus profundus DSM
           14977]
          Length = 583

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 75/214 (35%), Gaps = 23/214 (10%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           ++  R RL+   ++ + E        +++AR    +   Q   +    + +  +     E
Sbjct: 45  AEEERSRLEAERRRLVEETQREVEQLRQSAREEAARLSEQARRELEEARAEARQLRERAE 104

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-RLCE 543
           A           +  E  + LA+              L +D    +  +  ++   R   
Sbjct: 105 AEADRL---RAKLEAEMKERLAEE----------RQRLEADLARDRERIERDLEAIRRER 151

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                  ++L R+       +A  +     +    +Q +   +R   L R++ EIE ++ 
Sbjct: 152 EELKRQDERLARRGEQLDARAARLDELEEKLNAEERQLV---QRAEALDRREREIELKLE 208

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           ++      E    L++ L E      ++E ++A+
Sbjct: 209 EIAGLTREEARRQLLARLDE------ELEEEKAI 236


>gi|283850179|ref|ZP_06367468.1| replicative DNA helicase [Desulfovibrio sp. FW1012B]
 gi|283574205|gb|EFC22176.1| replicative DNA helicase [Desulfovibrio sp. FW1012B]
          Length = 485

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 56/213 (26%), Gaps = 31/213 (14%)

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVK------GKLSKKPSLREAALLLTLINHPAILQEQ 501
           R   +NA+     G    L    L +       K+  +    E A+L  ++   ++L   
Sbjct: 5   RKKPRNAKSSGPAGSGTTLTGQDLERVSSDVLRKVPPQNLEAEQAVLGGILLKNSVLFNL 64

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLK 551
              + +  + +   + ++  +     +        + + L   G            EL  
Sbjct: 65  VDLVGEDDFYSPAHRLVFQAILELSRKNAPIDLVSLAEALRTAGRLEEVGGPAYLAELTS 124

Query: 552 QLDRQVRDAGLWSATTEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
                           E  +             +     +    L  + E+    IA   
Sbjct: 125 STVSAANALHHAGIVREKAVQRKLISAAVDIITKCYEGGQETENLLDESEQAIFAIADSR 184

Query: 607 AK----GEAEKTAILISILHEVHIQIHQIESQE 635
                    +    +   + +      ++E++E
Sbjct: 185 TTKGLHSSKDLVTRVFEQIEK------RMENKE 211


>gi|282600728|ref|ZP_05979595.2| conserved hypothetical protein [Subdoligranulum variabile DSM
           15176]
 gi|282571539|gb|EFB77074.1| conserved hypothetical protein [Subdoligranulum variabile DSM
           15176]
          Length = 171

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 19/51 (37%)

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111
            YYCF C   GD +   + L G    E+  +LA   G+          +  
Sbjct: 6   RYYCFGCGATGDAVDLTAKLFGIGLREAAVKLAEDFGLNYDSRQKPSVRPR 56


>gi|259909530|ref|YP_002649886.1| DnaG primase-like protein, probable fragment [Erwinia pyrifoliae
          Ep1/96]
 gi|224965152|emb|CAX56684.1| DnaG primase-like protein, probable fragment [Erwinia pyrifoliae
          Ep1/96]
          Length = 48

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 2  NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTP 51
            P+  + +L   + ++ L   Q     ++  + V       CPFH EKTP
Sbjct: 3  RIPQKELDELKRSVSLAALAESQGHRLRQQGRDRVL-----LCPFHQEKTP 48


>gi|319428192|gb|ADV56266.1| conserved hypothetical protein [Shewanella putrefaciens 200]
          Length = 393

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 24/147 (16%)

Query: 41  ACCPFHDEK-TPSFHC---NDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
             CP+H+ K   SF      +  G   CF+C V  D    L      SF E+V+ + +  
Sbjct: 49  CGCPYHNSKSNDSFRLLKRAEEVGSAGCFTCGVWNDGFELLMHDRSISFSEAVKLVGSEV 108

Query: 97  G-------------VPLPV-----VDPKIEKKEKIQTDLIRLIEVATDFFHHS--LKNAR 136
           G             +            + E+  K +   +R+++  +D ++    L+   
Sbjct: 109 GYYDLSGQASEAAKIEADKAQARWEKKREEQAVKDKQTKVRMLKRLSDIWNECFDLEAPE 168

Query: 137 DKRLHYYLDERGIDSHAIEMFKLGYAP 163
            +    Y   RG+ +      ++ + P
Sbjct: 169 SEPARLYFQNRGLGNVGNLNSEVVFHP 195


>gi|270001439|gb|EEZ97886.1| hypothetical protein TcasGA2_TC000268 [Tribolium castaneum]
          Length = 766

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
              QK+   +    +++             +     L+++L   +    L     +    
Sbjct: 563 PLQQKIRQIVMKHGLDEPSADVAACISHAAQERLKNLIEKLA-IITGHRLDIVKKDLRYE 621

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQI----AQVTAKGEAEKTAILISILHEVHI-Q 627
                  Q   L +  R   ++ EE+E+++    A+  +K E  + A L +   E+   +
Sbjct: 622 VTNDVKGQLKFLEEVDRAERKRHEELEREMLLRAAKSRSKTEDPEQAKLKAKAREMQRVE 681

Query: 628 IHQIESQEA 636
           + ++  +EA
Sbjct: 682 MEELRQREA 690


>gi|119917099|ref|XP_601985.3| PREDICTED: cut-like homeobox 1 [Bos taurus]
          Length = 1532

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 99/286 (34%), Gaps = 22/286 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 99  DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 158

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q    +        ++  ++   +   +          KL +     +   L T +   
Sbjct: 159 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQT--LQTALEKT 216

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +I    +E++ + + L   +   E      E + ++L        L 
Sbjct: 217 RTELFDLKTKYDEEITAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 276

Query: 552 Q-------LDRQVRDAGLWSATTEAN--IVDVRQGYQQALALYKRFRLLSR----QKEEI 598
                   +++ +      S   E      ++ Q  +    L      L      Q  ++
Sbjct: 277 SQIQKAPDVEQAIEVLTRSSLEAELAAKEREIAQLVEDVQRLQANLSKLRENSASQISQL 336

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           E+Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 337 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPAEGAG 382


>gi|91077942|ref|XP_966532.1| PREDICTED: similar to transcription initiation factor [Tribolium
           castaneum]
          Length = 731

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
              QK+   +    +++             +     L+++L   +    L     +    
Sbjct: 528 PLQQKIRQIVMKHGLDEPSADVAACISHAAQERLKNLIEKLA-IITGHRLDIVKKDLRYE 586

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQI----AQVTAKGEAEKTAILISILHEVHI-Q 627
                  Q   L +  R   ++ EE+E+++    A+  +K E  + A L +   E+   +
Sbjct: 587 VTNDVKGQLKFLEEVDRAERKRHEELEREMLLRAAKSRSKTEDPEQAKLKAKAREMQRVE 646

Query: 628 IHQIESQEA 636
           + ++  +EA
Sbjct: 647 MEELRQREA 655


>gi|152968159|ref|YP_001363943.1| ATPase AAA [Kineococcus radiotolerans SRS30216]
 gi|151362676|gb|ABS05679.1| ATPase AAA-2 domain protein [Kineococcus radiotolerans SRS30216]
          Length = 878

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 72/207 (34%), Gaps = 12/207 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++ I +     R +++          +  +++    + +   K ++ +AAL+       
Sbjct: 319 YRERIEKDPALERRFQQVFVGEPSVPDTIGILRGLRERYEAHHKVAISDAALVAAATLSD 378

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLD 554
             +  +      I   +    +L   +     +      +E+ + +      EL L + +
Sbjct: 379 RYISGRQLPDKAIDLVDEAASRLRMEI-----DSSPVEIDELRRAVDRMRMEELALSKEE 433

Query: 555 RQVRDAGLWSATTEANIVDVR-----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
                  L +   +      +       ++Q  A   R   L  Q +E+  Q  ++  +G
Sbjct: 434 DAASRNRLETLRAQLADKQEQLTALTARWEQEKAGLNRVGDLKHQVDELRSQAERLQREG 493

Query: 610 EAEKTAI-LISILHEVHIQIHQIESQE 635
           +  + +  L   +  +  ++ Q ++ E
Sbjct: 494 DLGRASEILYGRIPALEAELRQAQAAE 520


>gi|212704874|ref|ZP_03313002.1| hypothetical protein DESPIG_02941 [Desulfovibrio piger ATCC 29098]
 gi|212671716|gb|EEB32199.1| hypothetical protein DESPIG_02941 [Desulfovibrio piger ATCC 29098]
          Length = 503

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 7/141 (4%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR-HRDQKGPSQRLMQSSLVKGKLSKKPSL 482
           + Q    R +++                + +   R  +   +     + +  ++      
Sbjct: 3   FRQQNSSRTREIIMASNEPFGSASSPSPRQSGAPRTSEANDRARTAENDLLRRVPPHSPE 62

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL----PEEI- 537
            E A+L  ++  P ++      +AD  +       ++      + +          E++ 
Sbjct: 63  AEQAVLGGILMRPQLMHVIVDLIADTDFYLPAHATIFRAFLDLYRKSAPIDLISTAEQLK 122

Query: 538 -HQRLCERGFGELLKQLDRQV 557
            +  L E G    L  L + V
Sbjct: 123 SNNALEEAGGAVYLADLAQAV 143


>gi|126723390|ref|NP_597732.1| ankyrin repeat domain-containing protein 24 [Homo sapiens]
 gi|182627626|sp|Q8TF21|ANR24_HUMAN RecName: Full=Ankyrin repeat domain-containing protein 24
          Length = 1146

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/198 (11%), Positives = 66/198 (33%), Gaps = 3/198 (1%)

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
             +  ++ +   S + R  ++    R +    ++ + ++  +    +    RE    + L 
Sbjct: 906  SEALRQSVVPASEHRRLQEEALELRGRAASLEQEVVATGKEAARLRAELERERVCSVALS 965

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
             H  I+      +A +     EL +          E      E +  +         L  
Sbjct: 966  EHERIVGTLQANVAQLEGQLEELGRRHEK---TSAEVFQVQREALFMKSERHAAEAQLAT 1022

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
             ++Q+R     +          ++   +A    K+   LS++   +++ + +  A     
Sbjct: 1023 AEQQLRGLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALKEQPAALATP 1082

Query: 613  KTAILISILHEVHIQIHQ 630
            +   L   + ++  Q+ +
Sbjct: 1083 EVEALRDQVKDLQQQLQE 1100


>gi|253991386|ref|YP_003042742.1| replicative DNA helicase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782836|emb|CAQ86001.1| replicative dna helicase [Photorhabdus asymbiotica]
          Length = 469

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 45/165 (27%), Gaps = 10/165 (6%)

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
           A  +     +       +   KL       E ++L  L+          + +    + + 
Sbjct: 2   AGKKSTHNKAVEPKDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVTSNDFFSR 61

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
             ++++S +              + + L + G       L      A L   +       
Sbjct: 62  PHRRIFSEMQRLLEMGNPIDLITLSESLEQSG------DLGNVGGFAYLAELSKNTPSAA 115

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
               Y   +    R R + R    +  +IA      +   +  L+
Sbjct: 116 NINAYADIV----RERAVVRDMIAVANEIADAGYDPQGRSSEELL 156


>gi|330752220|emb|CBL87178.1| DNA helicase, DnaB type [uncultured Sphingobacteria bacterium]
          Length = 515

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 70/203 (34%), Gaps = 12/203 (5%)

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
            K  ++  +    S     ++L  GK+  +    E A+L +++     L    + L    
Sbjct: 5   KKSASKFGNLTRVSYEKNLANLSYGKVQPQALPLEEAVLGSIMLDKDGLPSVIEILRPDS 64

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL---KQLDRQVRDAGLWSAT 566
           +     QK++  +   F + +      +H+ L +  + + +     L          +  
Sbjct: 65  FYKQGHQKIFEIMVGLFAKSQPIDLLTVHEALKKADYLDEVGGVNYLMELTNKVASAANI 124

Query: 567 TEANIVDVRQGYQQALA---------LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
                +  ++  Q+ L           ++  + +    +E E+ +  +T          L
Sbjct: 125 EYHARIIAQKYIQRELIRVSTMIISDSFEDNKDVLELLDEAERNLYDITDSNLNTGYESL 184

Query: 618 ISILHEVHIQIHQIESQEAMIEG 640
            S++ +   QI +   + A + G
Sbjct: 185 SSLVVKAQKQIEETSKKGAEMTG 207


>gi|159118026|ref|XP_001709232.1| Hypothetical protein GL50803_17283 [Giardia lamblia ATCC 50803]
 gi|157437348|gb|EDO81558.1| hypothetical protein GL50803_17283 [Giardia lamblia ATCC 50803]
          Length = 1523

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 84/217 (38%), Gaps = 20/217 (9%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
            +  + + DR    F +      G  R   ++A  +  +  ++     S ++   ++  +
Sbjct: 227 DHAVKDVTDR----FNEEKKRIDGKHRAELQSAETQTARLATEIDALKSRLEQAEAEADA 282

Query: 482 LR---EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           LR   E  +      +   ++    ++A +     E  +  S +F   +  +     ++ 
Sbjct: 283 LRTRCEEDVDKQKAYYDDQIEYLNSQVASLT----EAARSASGMFEGELAARDRDITKLS 338

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEE 597
             L +         L+R+    G+ +     +  ++ Q  +Q +  L  +   L  + +E
Sbjct: 339 AELRD--------SLEREDYLKGMMNQLKREHKEELDQLRKQNVKDLDAQKADLMEKVKE 390

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            E+ +A++ AK    + A L++ L E   +  ++E Q
Sbjct: 391 AERTLAEMLAKNTDGQIADLMAKLQEQEQRNERLEKQ 427


>gi|329118802|ref|ZP_08247499.1| replicative DNA helicase DnaB [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465089|gb|EGF11377.1| replicative DNA helicase DnaB [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 505

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 59/207 (28%), Gaps = 12/207 (5%)

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
           L  +  +   G  +    +          +    S      L       E ++L  L+  
Sbjct: 15  LLNRPFSHRKGRLKNMNDSMNDYTSDDYPEYEESSPAANLPLPPHSVEAEQSVLGGLLLE 74

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
            +        +    +  +E + ++  + +   E +      + + L      E     +
Sbjct: 75  NSAWDRIADVVVGEDFYRHEHRIIFRTITALINENRPADVITVQEFLERSDETEAAGGFN 134

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
             +  A    +              +  A   R R + R+  E+  +IA+     E    
Sbjct: 135 YLISLAQNTPSAANI----------RRYAEIVRERAIMRRLAEVGTEIARNAYNPEGRDA 184

Query: 615 AILISILHEVHIQIHQIESQEAMIEGF 641
           A L+        QI   ES     +GF
Sbjct: 185 AQLLDEAENKVFQIA--ESTAKSKQGF 209


>gi|296141829|ref|YP_003649072.1| replicative DNA helicase [Tsukamurella paurometabola DSM 20162]
 gi|296029963|gb|ADG80733.1| replicative DNA helicase [Tsukamurella paurometabola DSM 20162]
          Length = 469

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/163 (9%), Positives = 47/163 (28%), Gaps = 10/163 (6%)

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
             +      ++          +   G+   +    E ++L  ++     + +  + +   
Sbjct: 6   EQEFTPGPANRTDVPASDAPPAEDFGRQPPQDIAAEQSVLGAMMLSKDAIADVLEVVRPG 65

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
            +     Q ++  +   +   +      +   L  +G      +L R      L +  + 
Sbjct: 66  DFYRPAHQSVYDAILDLYGAGEPADAVTVSATLDRKG------ELKRVGGAPYLHTLIST 119

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
                    Y + +A     + + R+  E   +I Q    G  
Sbjct: 120 VPTAANAGYYAEIVA----EKAILRRLVEAGTRIVQYGYSGSE 158


>gi|326955333|gb|AEA29026.1| replicative DNA helicase [Pseudonocardia dioxanivorans CB1190]
          Length = 458

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 42/139 (30%), Gaps = 10/139 (7%)

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
              +    +   +    E ++L  ++     + +  + L    +     Q ++  +   +
Sbjct: 9   PAVAAPDYRQPPQDLTAEQSVLGGMLLSKDAIADVVEILRPDDFYRPAHQTVYDCILDLY 68

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
              +      +   L  RG      +L R      L +             Y + +A   
Sbjct: 69  GRGEPADAVTVSAELQRRG------ELIRLGGAPYLHTLIATVPTAANAAYYAEIVA--- 119

Query: 587 RFRLLSRQKEEIEKQIAQV 605
             + + R+  E   +I Q+
Sbjct: 120 -EKAILRRLVEAGTRIVQL 137


>gi|311105038|ref|YP_003977891.1| replicative DNA helicase [Achromobacter xylosoxidans A8]
 gi|310759727|gb|ADP15176.1| replicative DNA helicase [Achromobacter xylosoxidans A8]
          Length = 460

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 59/196 (30%), Gaps = 15/196 (7%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
              S L   ++       E ++L  L+   +        L +  +  ++ + +W  +   
Sbjct: 4   PADSQLEYLRVPPHSIEAEQSVLGGLLLDNSAWDRIADVLVEEDFYRHDHRLIWHHIARL 63

Query: 526 FVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
               +      +++ L   G  E       L  L      A       E           
Sbjct: 64  IGLARPADVITVNESLISAGKAEDAGGLAYLNALAHNTPSAANIRRYGEIVRERAMLRKL 123

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAK---------GEAEKTAILISILHEVHIQIHQ 630
             +A       L+ Q +E  + + +  +K           A     +  +L +V  +I +
Sbjct: 124 VTIADEISSAALNPQGKEARQLLDEAESKVFKIAQEGARGAAGFQEIQPLLTQVVERIDE 183

Query: 631 IESQEAMIEGFGKMSG 646
           +  +E   +  G  +G
Sbjct: 184 LYHREGSSDVTGVPTG 199


>gi|226291337|gb|EEH46765.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 2429

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/433 (9%), Positives = 125/433 (28%), Gaps = 39/433 (9%)

Query: 234  LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
             N+P+  +      L+     L             +      L      + S       +
Sbjct: 1393 FNTPQPEMEKSSGELFGGGPRLIPSYAIRSNAPSPSPQGSRPLFANVPKIDSAFGGPAHH 1452

Query: 294  VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV-- 351
            ++S   +++++    +    +P I    D D     +  +   L          VN +  
Sbjct: 1453 ILSPQRSSISDSNSPIRHLNNPEIEHVSDWD--DAISVGEDAKLRQRSRFFDRHVNEIVG 1510

Query: 352  -LLSRGEDPDSFIRCYGKTAFEKLIVESLPL--VDMLWKRETENRSFNTPDERAELEIHL 408
             ++    DP        + + + +    +     +   +R       ++  +  + E   
Sbjct: 1511 GIIEDRLDPLERTLGVIQQSIDIIAANQVLNQSHNQNTRRSASAGVEHSDADDEDDEEDD 1570

Query: 409  KNCINHIKDQKLRY-----YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
            +      +    R         QA+ + L     +   E          +          
Sbjct: 1571 EALRYRSRSPLNRRGRHVNSIKQAVAEALASHVPRI--EVPAPPPAPVVDLTEIHVALAE 1628

Query: 464  QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY-----QELADIRYDNNELQKL 518
             + + +      + + P   +  ++  +  HP +            +  ++     LQ +
Sbjct: 1629 LKTLAAPKPVEPVPEPPINLKQVIIDAISEHPRLNAPVESVSHTDNIEALKMQVEGLQAM 1688

Query: 519  WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
               +  +  E++Y +  +    +       LL+  +            TE    D+++  
Sbjct: 1689 LR-VADERAEKEYQIRRDAQDSV--AQCQRLLRIAEEDAAYHRELVMKTEEAFRDLKERT 1745

Query: 579  QQALALYKRFRLLSRQKEE---------------IEKQIAQVTAKGEAEKTAILI--SIL 621
                   +R   L ++++E               +E+ + +     +  ++ + +     
Sbjct: 1746 IPETERIERQSRLLQEQQESLQLTLSELSGKNISLEETLDEYRVSADQWRSQLEMVKREN 1805

Query: 622  HEVHIQIHQIESQ 634
             ++ + I+ ++ Q
Sbjct: 1806 KDLKLTINHMKEQ 1818


>gi|153814782|ref|ZP_01967450.1| hypothetical protein RUMTOR_00997 [Ruminococcus torques ATCC 27756]
 gi|145847813|gb|EDK24731.1| hypothetical protein RUMTOR_00997 [Ruminococcus torques ATCC 27756]
          Length = 635

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            ++ ++ L     ++L   YV    R         +Y         +  S   N  K  +
Sbjct: 2   EEYTREQLQRADDTDL---YVFLSGRGEQFKRCGKEYRWL------RHDSVMIN--KNEW 50

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116
           Y FS +  G  + F+    G SF E+V+ L    G  +   + +  K++  +  
Sbjct: 51  YRFSQNKGGHAIDFMKEFYGLSFAEAVKELLGEEG--VGETNRRTAKEDAGRQK 102


>gi|138894350|ref|YP_001124803.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265863|gb|ABO66058.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Geobacillus
           thermodenitrificans NG80-2]
          Length = 861

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 78/218 (35%), Gaps = 17/218 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI +     R +++          +  +++    + ++     + + AL+   +   
Sbjct: 319 YRQYIEKDPALERRFQQVLVEEPSVEDTISILRGLKERYEVHHGVKIHDRALVAAAVLSD 378

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL------ 549
             + +++     I   +     + + + S   E    +   +   + E    +       
Sbjct: 379 RYISDRFLPDKAIDLVDEACATIRTEMESMPSELDEVMRRVMQLEIEEAALSKETDEASR 438

Query: 550 --LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             L+ L  ++ +    +   +A     ++   +   + +      R+ EE E        
Sbjct: 439 TRLEALQNELANLRERANAMKAKWQQEKETLDRVRRVREELERAKRELEEAE-------N 491

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGKM 644
             +  K A L    + ++  Q+ Q+E QEA  +G GK+
Sbjct: 492 DYDLNKAAELRHGRIPQLEKQLKQLE-QEASGQGEGKL 528


>gi|324111161|gb|EGC05146.1| replicative DNA helicase [Escherichia fergusonii B253]
          Length = 454

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 10/136 (7%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L  L+       E    +    +  +  ++++S +       K      + + L 
Sbjct: 15  AEQAVLGGLMLDNCRWDEVADRIVADDFYTSVHREIFSEMERLLSHGKPIDLITLAEALE 74

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           + G      +L+R    A L   +           Y   +    R R + R+   +  +I
Sbjct: 75  QNG------KLERAGGFAYLAEMSKNTPSAANICAYADIV----RERAVVREMISVANEI 124

Query: 603 AQVTAKGEAEKTAILI 618
           A+     +   +  L+
Sbjct: 125 AEAGYAQDGRGSNELL 140


>gi|317029425|ref|XP_001391561.2| myosin type II heavy chain [Aspergillus niger CBS 513.88]
          Length = 2405

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 86/262 (32%), Gaps = 12/262 (4%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
               +       + +A LE   K           +    + +   L+ L      +     
Sbjct: 1045 EIIQRFENEKHEMQARLEELEKKLAEAESSSLEKEAKIKELGQELKMLQSHLSLKERKLQ 1104

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                K  +               L + K   K  + E  ++   I   +     Y+E   
Sbjct: 1105 DLETKLLKTDQDLEVKLSKTSRDLEESKKHIKELIEENRVIRQQITDLSSTSTGYEE--M 1162

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            +R   +E+  L +       E++Y   E++          E L++L  +V          
Sbjct: 1163 LRRKESEMAVLRNDAKKHEEEKRYLESEKVSLTTRHDSMQERLRELQAEVDAMRSEKVQL 1222

Query: 568  EANIVDVRQGYQQAL----ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA----ILIS 619
            E    DV++  +  +       +  +LL +Q +E++ Q+ +  A    E+ +     +++
Sbjct: 1223 EREAADVKKLLEAKISEDAEAGESRKLLEQQIQELKNQLFKAQADLSRERQSRDDVQMLA 1282

Query: 620  I--LHEVHIQIHQIESQEAMIE 639
               L E+  +   +   + +IE
Sbjct: 1283 EHNLAELKDKYTSLNESKIIIE 1304


>gi|301780872|ref|XP_002925852.1| PREDICTED: homeobox protein cut-like 1-like [Ailuropoda
           melanoleuca]
          Length = 1292

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 99/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 90  DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 149

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 150 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 209

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +I    +E++ + + L   +   E      E + ++L        L   
Sbjct: 210 ELFDLKTKYDEEITAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 269

Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 270 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 329

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 330 QLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 373


>gi|291387249|ref|XP_002710199.1| PREDICTED: coiled-coil domain containing 100 [Oryctolagus
           cuniculus]
          Length = 986

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 91/278 (32%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 645 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 702

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++     S      ++    + ++  + + +Q S+ + K   
Sbjct: 703 AEYSILEGKLQKTLIDLEKREQQLASAESELQREKKEVQLERERNLQELQDSIRRAKEDC 762

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E + +  L           Q+L+D       L+K +         +     +  
Sbjct: 763 AHQVELERSKIKQLEEDK---HRLQQQLSDSENKYKILEKEFQQFKDQQSSKPEIRLQSE 819

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 820 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 876

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+   +  A  E +        L ++  +++++  QE
Sbjct: 877 LEQMRLRYLAAEEKDTVKTEQQELLDIRNELNRLRQQE 914


>gi|242022382|ref|XP_002431619.1| transcription initiation factor TFIID subunit, putative [Pediculus
           humanus corporis]
 gi|212516927|gb|EEB18881.1| transcription initiation factor TFIID subunit, putative [Pediculus
           humanus corporis]
          Length = 921

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 57/149 (38%), Gaps = 10/149 (6%)

Query: 496 AILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
             +  Q + + D  + +      K+   + +  +++       +    C+     L+++L
Sbjct: 699 QFVGTQIRSVKDEIFLHSIPLQNKIRQIVSNHGLDEPSSEVASLVSHACQERLKTLIEKL 758

Query: 554 DRQVRDAGLWSATTEANIVDVRQG-----YQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
              + +  +     ++    V+       + + L   +R R    Q+ E+  + A+  +K
Sbjct: 759 A-CIAEHRIDVIKLDSRYEVVQDVKGQLKFLEELDRVERKRH-EEQERELLLRAAKSRSK 816

Query: 609 GEAEKTAILISILHEVHI-QIHQIESQEA 636
            E  +   L +   E+   ++ ++  +EA
Sbjct: 817 SEDPEQVKLKAKAKEMQRAEMEELRQREA 845


>gi|307149748|ref|YP_003890791.1| DnaB/helicase domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306986548|gb|ADN18426.1| DnaB domain protein helicase domain protein [Cyanothece sp. PCC
           7822]
          Length = 744

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 60/192 (31%), Gaps = 22/192 (11%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
            + +   + K    P   E  +L  ++     + +    L+   +       ++      
Sbjct: 2   TVANKPTEPKFLANPE-AEELILGGILFDSRAIAKVENILSPEHFYVRSHATIYQTALEL 60

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
           +          +   L E+G  E +  + R      +    + ANI    +   +     
Sbjct: 61  YRSGLPTDLMTVSHHLEEKGVLEQIGGISRLAT--LIERTVSAANIDSYARNIVRKHWEK 118

Query: 586 KRFRLLSRQKEE------------IEKQIAQVTA----KGEAEKTAILISILHEVHI--Q 627
           +  + LS +  E             E  I Q  +     G+    +  I+ + ++     
Sbjct: 119 RELQSLSYKITEWVEDPNYSPAQIAELIIHQAQSLTIASGDKSLLSRAIAQIKQILKIPD 178

Query: 628 IHQIESQEAMIE 639
           + +++ Q A +E
Sbjct: 179 LSELQ-QNAKLE 189


>gi|134076038|emb|CAK39397.1| unnamed protein product [Aspergillus niger]
          Length = 2406

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 86/262 (32%), Gaps = 12/262 (4%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
               +       + +A LE   K           +    + +   L+ L      +     
Sbjct: 1045 EIIQRFENEKHEMQARLEELEKKLAEAESSSLEKEAKIKELGQELKMLQSHLSLKERKLQ 1104

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                K  +               L + K   K  + E  ++   I   +     Y+E   
Sbjct: 1105 DLETKLLKTDQDLEVKLSKTSRDLEESKKHIKELIEENRVIRQQITDLSSTSTGYEE--M 1162

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            +R   +E+  L +       E++Y   E++          E L++L  +V          
Sbjct: 1163 LRRKESEMAVLRNDAKKHEEEKRYLESEKVSLTTRHDSMQERLRELQAEVDAMRSEKVQL 1222

Query: 568  EANIVDVRQGYQQAL----ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA----ILIS 619
            E    DV++  +  +       +  +LL +Q +E++ Q+ +  A    E+ +     +++
Sbjct: 1223 EREAADVKKLLEAKISEDAEAGESRKLLEQQIQELKNQLFKAQADLSRERQSRDDVQMLA 1282

Query: 620  I--LHEVHIQIHQIESQEAMIE 639
               L E+  +   +   + +IE
Sbjct: 1283 EHNLAELKDKYTSLNESKIIIE 1304


>gi|260469742|ref|ZP_05813901.1| conserved hypothetical protein [Mesorhizobium opportunistum
          WSM2075]
 gi|259028474|gb|EEW29791.1| conserved hypothetical protein [Mesorhizobium opportunistum
          WSM2075]
          Length = 434

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 16/95 (16%)

Query: 3  YPRDFIKDLLIHIPISNLI-----GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           P + +      + I ++       +    D R            CP    +   F  + 
Sbjct: 2  IPAEIVSRARD-MSIVDVALALGAAEGCKIDERGV---------PCPCCGGRD-RFSLDK 50

Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
           K  + C +    GD ++ +  +  CSF E++++L
Sbjct: 51 GKNVFLCRASSAGGDPIALVQHVHQCSFAEAIEQL 85


>gi|242310327|ref|ZP_04809482.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239522725|gb|EEQ62591.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 340

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 97/352 (27%), Gaps = 49/352 (13%)

Query: 53  FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP----------LPV 102
            + N  +    CF+C++ G+ +          F ++ + L +   +P             
Sbjct: 1   MYVNMKQNTCKCFACNLGGNGIEIAKFAFNGDFKKACEFLHSQFNIPFLDDSIITSGFTA 60

Query: 103 VDPKIEKKE---------KIQTDLIRLIEVATDFFHH----SLKNARDKRLHYYLDERGI 149
              K  KKE         K    L ++ E+   +        LK        Y L     
Sbjct: 61  PSFKAPKKEVQYMNFIRDKQYQSL-KVAELMPKYKQEDRLGKLKILYSFVYRYSLMTNQA 119

Query: 150 DSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL------LIDGDNSATSYDRFR 203
                   +   AP  +     +   K   +  I    L       I   N       + 
Sbjct: 120 KKEEYYKNRGIQAPLDKIGFLSYADVKSLEKSLISFFPLEDLTSFKIFNKNRVGWNYGYD 179

Query: 204 NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIR 263
             ++         +  F  R+L+         + E  +F     +Y              
Sbjct: 180 IAIVPCFDLYSDLITGFSVRSLNPNN----RGAKELNVFCSD-IVYPMPF--------NL 226

Query: 264 KDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK--LSPRIVLCF 321
            +    +  FI + EG++D LS   +  +  V  +  A        +        +++CF
Sbjct: 227 TNENLRNKDFIWICEGHIDALSGISSSKREDVCFISFAGVYTYKDEILGLLRGKNVMICF 286

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE-DPDSFIRCYGKTAFE 372
           D D  G +     ++L       G             D +  ++       +
Sbjct: 287 DNDTAGKQG---GMELGDKLKKLGVNTFIASWDNNYNDLNDLLKANALADIK 335


>gi|114328881|ref|YP_746038.1| replicative DNA helicase [Granulibacter bethesdensis CGDNIH1]
 gi|114317055|gb|ABI63115.1| replicative DNA helicase [Granulibacter bethesdensis CGDNIH1]
          Length = 507

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 47/167 (28%), Gaps = 10/167 (5%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           S        +  +L       E ALL  L+ +    +   + LA   + +    +L+  +
Sbjct: 8   SPSEPALLGLSQRLPPSNHQAEQALLGALLTNNKAYERVSEFLAPEHFADPIHGRLYHSI 67

Query: 523 FSDFVEQKYFLPEEIHQRLCERGF------GELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
                  +      +       G          L +L   +           A    +  
Sbjct: 68  ARRIETGQLADAITLKAEYEHSGLLDPVGGSAYLGKLMSAMVGIINAGEYGRA----IHD 123

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
            + +   +     +++R     +     ++A+ + E     +  L E
Sbjct: 124 AWLRRQLIDLGEHVVNRAFGAADDAAQALSAREQLETAEQTLFDLAE 170


>gi|328702403|ref|XP_001952092.2| PREDICTED: myosin heavy chain, muscle isoform 1 [Acyrthosiphon pisum]
          Length = 1969

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/260 (11%), Positives = 83/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1579 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1638

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L + S  +    ++  + E           A+  E 
Sbjct: 1639 NKANAEAQKNIKRYQQQLKDVQTALEEESRAREDAREQLGISER-------RANALQNEV 1691

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE----IHQRLCERGFGELLKQLDRQV 557
             +    +   +   +++   L     +      +       +R  E     L   LD  +
Sbjct: 1692 EESRTLLEQSDRGRRQVEQELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELL 1751

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E QI ++  + +  +   L
Sbjct: 1752 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQVRLDEAENNAL 1811

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1812 KGGKKAIQKLEQRVRELENE 1831



 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 71/222 (31%), Gaps = 15/222 (6%)

Query: 428  IRDRLQQLFQKYITEHSGYGRYWKKNARH--RDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            I +R     Q  + E         +  R   ++     ++L + S     +S      E 
Sbjct: 1679 ISERRANALQNEVEESRTLLEQSDRGRRQVEQELADAHEQLNELSAQATSISAAKRKLEG 1738

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L     +   +L E        +    +  +L   L     +      E++ + L  + 
Sbjct: 1739 ELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADEL--RAEQDHAQTQEKLRKALETQ- 1795

Query: 546  FGELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              EL  +LD    +A        +     VR+   +     +R     +   + E++I +
Sbjct: 1796 IKELQVRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKSERRIKE 1855

Query: 605  VTAKGEAEK---------TAILISILHEVHIQIHQIESQEAM 637
            ++ +G+ ++            L   +     QI + E   A+
Sbjct: 1856 LSFQGDEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL 1897


>gi|327273287|ref|XP_003221412.1| PREDICTED: ras and EF-hand domain-containing protein-like [Anolis
           carolinensis]
          Length = 693

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 80/225 (35%), Gaps = 16/225 (7%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           Q +  +   + +    E     +   + +     +      +   L    + K+ +  E 
Sbjct: 89  QFLLGKKGSISEMQGHEPENLYQPQWEESNTDIDEEDQFSDLMERLGASNVFKEENDVEK 148

Query: 486 ALLLTLINHPAILQ-------EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             L    N P +L        + + +L ++ Y+ N L+       + + E+   L EE+ 
Sbjct: 149 LWLHLKKNEPHLLSSFEVFLAKVFSQLQEVNYEKNALESALQKKIAAYDEEIQHLYEEME 208

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           Q++       LLK   R    +       E    ++ Q  Q+   L  +++ L   K+E 
Sbjct: 209 QQIKNEKEAFLLKDTARFQSRSQDLEHKLEVKEQELEQLAQKQKRLEGQYKDLHNDKQET 268

Query: 599 E-----KQIAQVTAKGEAEKTAILI----SILHEVHIQIHQIESQ 634
           +      ++     + E E+T+  +      L  +  +  +++ +
Sbjct: 269 KVENTKLRLTNQELQNELERTSQALAIAQQQLQVLQDEAKELQEE 313


>gi|225017376|ref|ZP_03706568.1| hypothetical protein CLOSTMETH_01302 [Clostridium methylpentosum
           DSM 5476]
 gi|224949786|gb|EEG30995.1| hypothetical protein CLOSTMETH_01302 [Clostridium methylpentosum
           DSM 5476]
          Length = 352

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 71/243 (29%), Gaps = 40/243 (16%)

Query: 9   KDLL--IHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
            ++     + I +L   Y  + ++    AV   +              +       +  F
Sbjct: 14  DEIRKANSVDILSLARGYGYEPEKAGRKAVHMKHSGG----------LYIFPENNRF--F 61

Query: 66  S-----CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK----KEKIQTD 116
                   VKG  + F+      SF E+V +L            P +++    +EK +  
Sbjct: 62  QWTGPDDGVKGGAIDFVMREENLSFPEAVGKLIGK------EFSPSVKQVVPYEEKEREP 115

Query: 117 LI-----RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171
           L+       ++ A  ++  S++    K + ++++ + I         +    D+  + R 
Sbjct: 116 LVLPEKADNMKRAY-WYLVSVRGISPKIVSHFMNRKMIYQEKKYGNCVFVGYDAEGTARY 174

Query: 172 HL----RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
                 R     +     +       +   +           + S       F GR   +
Sbjct: 175 CSMRAARDNSSFKMDATGSDKSYPFFHEGKTDLLIVTEAPIDLMSHASIAADFYGRDWMQ 234

Query: 228 GES 230
              
Sbjct: 235 DHR 237


>gi|217978349|ref|YP_002362496.1| putative DNA primase [Methylocella silvestris BL2]
 gi|217503725|gb|ACK51134.1| putative DNA primase [Methylocella silvestris BL2]
          Length = 388

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 77/261 (29%), Gaps = 23/261 (8%)

Query: 53  FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112
           F  N  K  +YC +  + GD ++    + G SF+ +V+ +    G  LP     +E  E 
Sbjct: 18  FAVNLRKNVWYCRASGIGGDAIALAQHIDGSSFLVAVETI---LG-ELPPGLGPVEYDEA 73

Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172
            +T    L     D+          K   ++ +     +  + +     A  +  +  + 
Sbjct: 74  KRTRENGLASARADWRREQ---DGAKTEQHFRERERRAARRLWIEAAPIAGTTGEAYLKL 130

Query: 173 LR---QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
                  G        A L     +           LI  I  + G+        +   +
Sbjct: 131 RGVESPPGARLRFHANAQLWDRPKDQGGKIVHSGPALIAAIEGASGRFSGVQRTWIDLAQ 190

Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQ---------KSIRKDVRRNSSSFIILVEGY 280
                     I+  +   +     A   ++         ++      R     + L EG 
Sbjct: 191 PK----GKALIIHPETGEVLPSKKARGSIKGGTVLLRRPETAEFPGDRQICRRLFLGEGI 246

Query: 281 MDVLSLCQAGVQNVVSSLGTA 301
             VLS+  A  +     L  A
Sbjct: 247 ETVLSVHAAMREANDPLLEGA 267


>gi|39938862|ref|NP_950628.1| hypothetical protein PAM_376 [Onion yellows phytoplasma OY-M]
 gi|39721971|dbj|BAD04461.1| hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 130

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 21/133 (15%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDY----WACCPFHDEKTPSF-HC 55
           MNY ++ IK +  H P+S      V   +   N +  ++       CP H  K P+  H 
Sbjct: 1   MNY-QEKIKHIQTHFPMS------VLLKK--LNIIPPNFNINHRFPCPIHQGKNPTCCHF 51

Query: 56  NDSKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAAIAG-VPLPVVDPKIEKKEKI 113
                  +C+ C    D +    A+    SF E++Q++A          ++ + ++  KI
Sbjct: 52  TSDNKI-HCWKCCKDYDIIDVYMAIRQIKSFHEAIQKIAGFMNSFEFKALNKQEKEITKI 110

Query: 114 Q----TDLIRLIE 122
                  L + ++
Sbjct: 111 TINPLKQLYQPMK 123


>gi|312886996|ref|ZP_07746600.1| mobilizable transposon, excision protein, putative
          [Mucilaginibacter paludis DSM 18603]
 gi|311300308|gb|EFQ77373.1| mobilizable transposon, excision protein, putative
          [Mucilaginibacter paludis DSM 18603]
          Length = 319

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 11 LLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
          +   + I+ L+ +  Y    +  T +V           D K PS   ND+ G +Y     
Sbjct: 10 IREQVSITALLARLGYQPAHKSGTESVYRSVLRQ----DGKKPSLCVNDTLGVWYDKGTG 65

Query: 69 VKGDHLSF 76
            G+ + F
Sbjct: 66 KGGNVIDF 73


>gi|260592920|ref|ZP_05858378.1| toprim domain protein [Prevotella veroralis F0319]
 gi|260535120|gb|EEX17737.1| toprim domain protein [Prevotella veroralis F0319]
          Length = 686

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 90/333 (27%), Gaps = 51/333 (15%)

Query: 43  CPFHDEKTPSFHCNDSKGF----YYCFS-CHVKGDHLSFLSALLGC----SFIESVQRLA 93
            PF+D+K  S H    +      +Y        GD   F++ + G     SF E ++ + 
Sbjct: 34  SPFYDDKRASCHIFYDRKSSSYKFYDHGDTTYSGDCFWFVATMRGLNLKTSFPEVLETIV 93

Query: 94  AIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHA 153
              G                                  L +  D   H     +      
Sbjct: 94  QELG----------------------------------LYSLCDGEQHSKHITQSYKKTI 119

Query: 154 IEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS 213
               +      +         Q          A   I  D       R   R  +   S+
Sbjct: 120 GFSPETDMPKHTVERPYSFEIQPFDDGLLNYWAHYGIHEDALRRFRVRSLKR--YESISA 177

Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILF--HKGKNLYNFFGALNYLQKSIRKDVRRNSS 271
            G+     G          Y+ +    ++  H  K  +  +G           +      
Sbjct: 178 EGRKFELYG--SPTEPMFAYIGNGYVKIYRPHSPKIRF-LYGGRMPATYCFGMEQIPAKG 234

Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRA 330
             + +  G  DVLSL   G   +  +     +    +  L      I+L +D D+ G+R 
Sbjct: 235 DMLFITGGEKDVLSLYAHGFNAICFNSETAQIPTSIIESLQLRFRHIILLYDADETGVRE 294

Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           +++  + +  + +    +        +D   F 
Sbjct: 295 SHRQAEHLAEYKVLNLSLPLSGTKSEKDISDFF 327


>gi|222083246|ref|YP_002542649.1| hypothetical protein Avi_9158 [Agrobacterium vitis S4]
 gi|221738626|gb|ACM39464.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 320

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD 104
            KGD  S +  + G SF++++ R+A++ GV L   +
Sbjct: 61  AKGDVFSLIQHMEGFSFLDALNRVASLVGVDLQEPE 96


>gi|123444027|ref|YP_001007997.1| replicative DNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332163186|ref|YP_004299763.1| replicative DNA helicase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122090988|emb|CAL13871.1| replicative DNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318603929|emb|CBY25427.1| replicative DNA helicase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667416|gb|ADZ44060.1| replicative DNA helicase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861936|emb|CBX72105.1| replicative DNA helicase [Yersinia enterocolitica W22703]
          Length = 468

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 44/143 (30%), Gaps = 3/143 (2%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
            +             +   KL       E ++L  L+          + +A   + +   
Sbjct: 3   AKKPTNNMTEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASKDFFSRPH 62

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           +++++ +       K      + + L ++G    L+ +      A L   T  A  +   
Sbjct: 63  RRIFTEMQRLLENSKPIDLITLSESLEQKGD---LESVGGFAYLAELSKNTPSAANIGAY 119

Query: 576 QGYQQALALYKRFRLLSRQKEEI 598
               +  A+ +    ++ +  + 
Sbjct: 120 ADIVRERAVVREMISVANEIADA 142


>gi|84684073|ref|ZP_01011975.1| hypothetical protein 1099457000262_RB2654_16531 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667826|gb|EAQ14294.1| hypothetical protein RB2654_16531 [Rhodobacterales bacterium
           HTCC2654]
          Length = 405

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 13/93 (13%)

Query: 5   RDFIKDLLIH---IPISNLIGQYVD---WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58
              I+D       +PI  L+ + +      R+      G+    CP     T  F  N +
Sbjct: 26  NAVIEDRKAQAKALPIGELV-ERLQIPNLKRQ-----SGELVGPCPACGG-TDRFAINAA 78

Query: 59  KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91
           KG + C SC   G  ++ +  +L C F  ++  
Sbjct: 79  KGVFNCRSCGANGGGVNLVRHVLACDFGAAIDW 111


>gi|317500286|ref|ZP_07958513.1| toprim domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898329|gb|EFV20373.1| toprim domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 635

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            ++ ++ L     ++L   YV    R         +Y         +  S   N  K  +
Sbjct: 2   EEYTREQLQRADDTDL---YVFLSGRGEQFKRCGKEYRWL------RHDSVMIN--KNEW 50

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116
           Y FS +  G  + F+    G SF E+V+ L    G  +   + +  K++  +  
Sbjct: 51  YRFSQNKGGHAIDFMKEFYGLSFAEAVKELLGEEG--VGETNRRTAKEDAGRQK 102


>gi|212530168|ref|XP_002145241.1| dynactin, putative [Penicillium marneffei ATCC 18224]
 gi|210074639|gb|EEA28726.1| dynactin, putative [Penicillium marneffei ATCC 18224]
          Length = 1340

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 67/221 (30%), Gaps = 6/221 (2%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + ++ +L+ + +K   +        +  A     +G  Q+L      +         + 
Sbjct: 294 LEDLKTKLKVMEKKRAEDRERLKSLERLQAERDKYEGIIQKLQAKYQPQQIELTDLKKKI 353

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                 L     I  E    L     D    ++      ++  + K  L E   +    R
Sbjct: 354 RETEAKLEQAERIQAEHESILEVAALDREMAEETAEAFKAECQDYKIRLEELQLELEVLR 413

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIA 603
              E L  +      +       E     +R+   +   + ++    L  Q +E++  + 
Sbjct: 414 DENEELSNVMSPEDKSSQGWLQMEKTNERLREALIRLRDMTQQTEAELRDQIKELQDDLE 473

Query: 604 Q-----VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +        +   EK     + + E+  Q+      E MIE
Sbjct: 474 EYTTVKAEYESIKEKLLASETNVDELKQQLETALGAEEMIE 514


>gi|119502822|ref|ZP_01624907.1| replicative DNA helicase [marine gamma proteobacterium HTCC2080]
 gi|119461168|gb|EAW42258.1| replicative DNA helicase [marine gamma proteobacterium HTCC2080]
          Length = 444

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 54/169 (31%), Gaps = 14/169 (8%)

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +    E +++  L+  P       + +    +   E + ++  +       +      
Sbjct: 2   QPQSVEAERSVIGGLLISPEGWDAIAEVVVSEDFYRPEHRAIFRQIAKLVDLGQPVDVIT 61

Query: 537 IHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-- 584
           +  RL   G            EL +            +A  E  ++    G  Q +A   
Sbjct: 62  VADRLLATGELDAAGGHTYLAELAETTPTAANIRAYATAVHERAVLRKLIGAAQDIASTG 121

Query: 585 -YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS-ILHEVHIQIHQI 631
            +   R      +E E++I Q++ +G     A  +  +L     +I ++
Sbjct: 122 FHPEGRSAEELLDEAERRIMQISEEGPKTGGARAMEPLLQGALERIEEL 170


>gi|238789908|ref|ZP_04633688.1| Replicative DNA helicase [Yersinia frederiksenii ATCC 33641]
 gi|238721981|gb|EEQ13641.1| Replicative DNA helicase [Yersinia frederiksenii ATCC 33641]
          Length = 468

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 44/143 (30%), Gaps = 3/143 (2%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
            +             +   KL       E ++L  L+          + +A   + +   
Sbjct: 3   AKKPTNNMTEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASKDFFSRPH 62

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           +++++ +       K      + + L ++G    L+ +      A L   T  A  +   
Sbjct: 63  RRIFTEMQRLLENSKPIDLITLSESLEQKGD---LESVGGFAYLAELSKNTPSAANIGAY 119

Query: 576 QGYQQALALYKRFRLLSRQKEEI 598
               +  A+ +    ++ +  + 
Sbjct: 120 ADIVRERAVVREMISVANEIADA 142


>gi|304437861|ref|ZP_07397809.1| replicative DNA helicase DnaB [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369161|gb|EFM22838.1| replicative DNA helicase DnaB [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 439

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 47/147 (31%), Gaps = 10/147 (6%)

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
           + +G++  +    E ++L +++  PA + +  + L    +     + ++  +       +
Sbjct: 1   MPEGRVPPQSIEAELSVLGSMMLKPAAVSQAVELLHAEDFYRQAHRAVFEAMELLLRNGE 60

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 + + L + G  E +  +           +T                A   + + 
Sbjct: 61  PVDIVTVTESLKKSGLLEQVGGISFLANLTNTVPSTANLAH----------YAKIVKEKA 110

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAIL 617
           + R   +   +IA    +   +    L
Sbjct: 111 VLRALIDASTEIAGAAYEASEDIAEQL 137


>gi|281207953|gb|EFA82132.1| hypothetical protein PPL_05037 [Polysphondylium pallidum PN500]
          Length = 1191

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 66/201 (32%), Gaps = 8/201 (3%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            + +          +K  +   ++    R     L K +        E   L   +    
Sbjct: 241 DRLLKLLDQEREQHQKALKAAQEQEQRDRQFAEKLQKEQEEAAKLEAERTALKQALQ--- 297

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
              +   E   +     + +     +    +++K     E  +R+ E+   EL++Q    
Sbjct: 298 ---KHESERKKLEEQAEQAKAQKEKI-DLEMKKKQEEEIEKQKRIFEKQQKELIEQ-QIA 352

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           +             ++ +    Q+ L   K    L ++ +  E+ + +   + + +    
Sbjct: 353 LEAKRQKELEHNKELLRLHDSDQRQLEELKNKLDLLQRNQSEEEMMKKHEIELKRQNELE 412

Query: 617 LISILHEVHIQIHQIESQEAM 637
           L+  + E+  Q  +++  +A+
Sbjct: 413 LVKHIEELERQKVELQKLQAL 433



 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 36/317 (11%), Positives = 104/317 (32%), Gaps = 49/317 (15%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P    +       + ++ E  P+                 +    +            D+
Sbjct: 86  PMLSDKRQVYKEIKNIVGEIDPMQQSAIFDVYTATGGKIQETAQIVHSWTT-------DE 138

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L     + + + +++  +          R  ++  + +      +R  + +L + +L  
Sbjct: 139 ALEEQ--KRVMEIMEKERESLRLAKEEQLRRHQQMIQQQKIAAEKERAERDALEQKRLDL 196

Query: 479 KP---SLREAALLLTLINHPAILQEQ---------------YQELADIRYDNNELQKLWS 520
           +      RE   L+ L+    +++++                ++   ++  + E ++   
Sbjct: 197 QRVEQERREKERLVLLMREQELIKQEEEKQRQEQERKRREQVEQDRLLKLLDQE-REQHQ 255

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
                  EQ+     +  ++L +    E   +L+ +           E+    + +  +Q
Sbjct: 256 KALKAAQEQEQRDR-QFAEKLQKE--QEEAAKLEAERTALKQALQKHESERKKLEEQAEQ 312

Query: 581 ALALYKRFRLL-----------------SRQKEEIEKQIA-QVTAKGEAEKTAILISILH 622
           A A  ++  L                   +QKE IE+QIA +   + E E    L+ +  
Sbjct: 313 AKAQKEKIDLEMKKKQEEEIEKQKRIFEKQQKELIEQQIALEAKRQKELEHNKELLRLHD 372

Query: 623 EVHIQIHQIESQEAMIE 639
               Q+ +++++  +++
Sbjct: 373 SDQRQLEELKNKLDLLQ 389


>gi|255103323|ref|ZP_05332300.1| hypothetical protein CdifQCD-6_21095 [Clostridium difficile
           QCD-63q42]
          Length = 353

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/396 (10%), Positives = 99/396 (25%), Gaps = 67/396 (16%)

Query: 10  DLLIHIPISNLIG--QYV--DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
           ++        +I   +Y+  D   +  +         C  H+  +           ++C+
Sbjct: 2   EIKDLTN-EQVINFMEYLGSDLSPKSNDRQLIFNTCLC--HNGDSYKLFYYTESKTFHCY 58

Query: 66  S-CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
           S C   G  +  L  +    F +++  +    G+    +  K  + +K    +  + ++ 
Sbjct: 59  SSCGHIGSLIDLLIHINKYEFKDAINEIKDFFGISNQPMLRKGFRIKKKVEQIHDIKDIQ 118

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
            +     L     K   Y   ++                 +          +        
Sbjct: 119 IE-----LLPTPKKPYVYKTFQQVPIEEWENENISFEVLKTYQVYYNLYENQIVIPHFC- 172

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY------LNSPE 238
                                        R + +    R L + ++  +           
Sbjct: 173 --------------------------WHDRARPVGIRVRNLDEDKAKSFGKYIPLWYDNR 206

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC-QAGVQNVVSS 297
                   NLY                    +S  +I+ EG   VL +         V+ 
Sbjct: 207 CYNHRLSLNLYGLN----------VNKKSIKNSKKVIVFEGEKSVLQMATMYKNNPSVAI 256

Query: 298 LGTALTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            G+  +  Q ++L       +++ FD            I     +          L+   
Sbjct: 257 CGSNFSREQKKILIDLGIEELIIAFDRQFKVKDDEEYVIWRDKIYK---------LVQDI 307

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETEN 392
           +D  +    + K                ++++  +N
Sbjct: 308 KDVVNISVIWDKYNLLGYKDSPSDKGKTIFEKLLKN 343


>gi|40062771|gb|AAR37665.1| replicative DNA helicase [uncultured marine bacterium 439]
          Length = 480

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 59/173 (34%), Gaps = 14/173 (8%)

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
           +   KL       E ++L  L+ H          ++   +     + ++  + +     K
Sbjct: 3   IENTKLPPNSIDSEQSVLGGLLLHNDSWDRVVNIISTNDFYQASHRIIYDAIVTLLEHDK 62

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 + +++ +    + +       + A      +            ++ A + R   
Sbjct: 63  PADILTVKEQVIKTHDEDSIGGFAYLAQIADNTPTVSNI----------ESYAKHVRELS 112

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILI----SILHEVHIQIHQIESQEAMIE 639
           + RQ  +I ++IA+   + +  +   L+      + E+  Q+ + + +   I+
Sbjct: 113 VYRQLIKIGREIAETAFQPKDIEVNELLDLSEKKIFEIAEQVSRNKKEITNIK 165


>gi|307152513|ref|YP_003887897.1| replicative DNA helicase [Cyanothece sp. PCC 7822]
 gi|306982741|gb|ADN14622.1| replicative DNA helicase [Cyanothece sp. PCC 7822]
          Length = 1004

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 63/191 (32%), Gaps = 15/191 (7%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           +S +    L  +    E  +L  ++  P  +      L+   +       ++    +   
Sbjct: 5   KSQISDHSLPPQNVEAEELILGGILFDPRAISRVADLLSAEVFYAQAHGDIYQAALTLHQ 64

Query: 528 EQKYFLPEEIHQRLCER-------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-- 578
           + K      +   L ++       G   L + ++R V  A +           +R+    
Sbjct: 65  QGKPTDLMTVSAYLEDQHLLEKVGGVNRLAQLIERTVSAANIDRYAAIIIDKYLRRQLIN 124

Query: 579 --QQALAL-YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             Q  + L +     L    EE EK+I  +T K   E    +   L     ++ +++ + 
Sbjct: 125 AGQDIVTLGHDTTTELETVFEESEKKIFNLTQKRPQEGLVQIAQPLMNAFTEMEKMQQKL 184

Query: 636 AMIEGFGKMSG 646
            +    G  SG
Sbjct: 185 LLP---GISSG 192


>gi|332363086|gb|EGJ40873.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis SK355]
          Length = 641

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 17/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +   +         +    L +
Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELYETGSTLYLGDYDYYLEK 541

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++   Q             +    ++  ++   L +R   L  Q E+++ QI+
Sbjct: 542 KAEQEALREETEQASPD---KPAPTNDYQLQKENQKEQRRLARRLEQLEAQIEDLDSQIS 598

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
           Q+    EA   A   + L E   QI Q+ +  +EAM+E
Sbjct: 599 QLQEAMEATNDA---AELMESQQQIDQLTAAQEEAMLE 633


>gi|320546524|ref|ZP_08040839.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus equinus ATCC 9812]
 gi|320448909|gb|EFW89637.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus equinus ATCC 9812]
          Length = 639

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 20/161 (12%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +     E       +    L +
Sbjct: 472 NHLDIDSKEVLEDALIDFDGTLLFVSHDRYFINRVATKVLEISEEGSTLYLGDYDYYLEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L +L  +           +A   D    YQ   A  K  R L+R+  EIE Q+ 
Sbjct: 532 KAELEELARLKAEEAQEKTTVVVEKAPAND----YQAQKANQKELRKLTRRITEIENQLE 587

Query: 604 QVTAKGEAEKTAILIS-----ILHEVHIQIHQI-ESQEAMI 638
           ++ A+ E E +  +++      L ++  ++ ++ E QE ++
Sbjct: 588 KIEAR-EEEISQAMLATNEASELIDLQKELDELTEQQETLM 627


>gi|229825746|ref|ZP_04451815.1| hypothetical protein GCWU000182_01109 [Abiotrophia defectiva ATCC
           49176]
 gi|229790309|gb|EEP26423.1| hypothetical protein GCWU000182_01109 [Abiotrophia defectiva ATCC
           49176]
          Length = 446

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 54/164 (32%), Gaps = 12/164 (7%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K        E +++ ++I  P  +    + L    + +     ++S +     E K   
Sbjct: 8   KKTPPHSKSAEQSVIGSMILDPETVITVAEILEAEDFYDKRYGLIFSAITGLEKEGKPID 67

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              I  R+  +   + L  ++  V    + + +T  N+    +          +  LL +
Sbjct: 68  IITIENRI--KEMNQPLGAIEMNVLGELVMAVSTSVNVAHHAEIVY-------KNSLLRK 118

Query: 594 QKEEIEK-QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             +  EK  +     +   E    L     E+   + + +  +A
Sbjct: 119 LIKVAEKISLNCYAGESNLEDILQLTE--KEIFDLLQKRQVSDA 160


>gi|114762696|ref|ZP_01442130.1| HlyD family secretion protein [Pelagibaca bermudensis HTCC2601]
 gi|114544606|gb|EAU47612.1| HlyD family secretion protein [Roseovarius sp. HTCC2601]
          Length = 431

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 5/120 (4%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
               + Q+      +  +L      E L  L+R         +   A      +  Q+  
Sbjct: 158 VKARIAQRTSDIAAVGDQLP--LIAEELAMLERSQSVTEDLRSRNLATQQQADEQMQRLD 215

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKG---EAEKTAILISILHEVHIQIHQIESQEAMIE 639
            L  R + L  ++E   + I ++ A     + +  A   S + E   Q+  ++++EA +E
Sbjct: 216 GLRLRQQELRGERERATQNIEELEATLRRIDLDAVAEARSRIAEAQAQLRGLKAREAALE 275


>gi|73967058|ref|XP_868305.1| PREDICTED: similar to myosin 18A isoform b isoform 4 [Canis
            familiaris]
          Length = 2002

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 82/273 (30%), Gaps = 9/273 (3%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             +      ++  VD   KR  +        E+       +   +   D        Q ++
Sbjct: 1370 EWRLKYERAMREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADIDESQRALQQLK 1429

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             + Q+L  +             +N          QR   S L +     +    +   L 
Sbjct: 1430 KKCQRLTAELQDTKLHLEGQQVRNHEL----EKKQRRFDSELSQAHEEAQREKLQREKLQ 1485

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                   +L E +     +   + ++      + S   E +    +E           + 
Sbjct: 1486 R--EKDTLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQ 1543

Query: 550  LKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            L+ L+ +V+D           I     ++Q   Q    Y+  + + R+K E+E ++  ++
Sbjct: 1544 LRDLEAKVKDQEEELDEQAGTIQMLEQLKQMEVQLEEEYEDKQKVLREKRELESKLTTLS 1603

Query: 607  AKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             +           +  ++      +   + M++
Sbjct: 1604 EQVSQRDLESEKRLRKDLKRTKALLADAQIMLD 1636



 Score = 44.5 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 31/300 (10%), Positives = 77/300 (25%), Gaps = 30/300 (10%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R   +    +   ++L       K++ E +  +      ++        +    + 
Sbjct: 1472 EEAQREKLQREKLQREKDTLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQES 1531

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                    ++ +L+ L  K   +                 K    +L +    K K+ ++
Sbjct: 1532 KDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQLKQMEVQLEEEYEDKQKVLRE 1591

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEI 537
                E+ L            E  + L         L      +               ++
Sbjct: 1592 KRELESKLTTLSEQVSQRDLESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQL 1651

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +L E  F          V+         E   + +    +   AL ++   L R+K E
Sbjct: 1652 KNQLEESEFT-----CAAAVKARKAMEVEMEDLHLQIDDIAKAKTALEEQLSRLQREKNE 1706

Query: 598  IEKQIAQVTAKGE-----------------------AEKTAILISILHEVHIQIHQIESQ 634
            I+ ++ +                               +         E+  ++  ++SQ
Sbjct: 1707 IQSRLEEDQEDMNELMKKHKAAVAQASRDLAQMNDLQAQLEEANKEKQELQEKLQALQSQ 1766



 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1742 LQAQLEEANKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFER 1798

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1799 TQVKRLESLASRLKENMEKLTEERDQRTAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1858


>gi|187932546|ref|YP_001885129.1| replicative DNA helicase [Clostridium botulinum B str. Eklund 17B]
 gi|187720699|gb|ACD21920.1| replicative DNA helicase [Clostridium botulinum B str. Eklund 17B]
          Length = 438

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/135 (6%), Positives = 43/135 (31%), Gaps = 4/135 (2%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +        E  ++  +  +P+I  E  +++    +   + + +++ + S F E +    
Sbjct: 5   QALPSSIRTEQEIIGAIFYNPSIAAEVIEKVITEDFYRTDHKLIYNAICSLFAEGEDINL 64

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +  ++ +      +  +        L             +  +      +  + +++ 
Sbjct: 65  TMLINKIGKEK----ISDIGGVTYLTELQLGGMPIRPNSYIKILKDKSYRRQAIKSMTKA 120

Query: 595 KEEIEKQIAQVTAKG 609
             ++  +  +    G
Sbjct: 121 ISKLHNETTKAYEIG 135


>gi|325965239|ref|YP_004243145.1| primary replicative DNA helicase [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323471326|gb|ADX75011.1| primary replicative DNA helicase [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 460

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/161 (8%), Positives = 45/161 (27%), Gaps = 13/161 (8%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
             +   +    E ++L  ++     + +  + L    +     + ++  +   +   +  
Sbjct: 17  ASRKPPQDIPAEQSVLGGMMLSKDAIADVVEILRGQDFYRPAHETIYEAIIDLYGRGEPA 76

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               +   L +      + ++        L      A       GY   +      R + 
Sbjct: 77  DAVTVSDELTK---RAEINRIGGPAYLHELIQTVPTA----ANAGYYAEIVA---ERAVL 126

Query: 593 RQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIHQ 630
           R+      +I Q+    +    +      + ++ V  +   
Sbjct: 127 RRLVNAGTKIVQLGYGSDGEVEDLVNQAQAEVYAVAERRTA 167


>gi|229822131|ref|YP_002883657.1| ATP-dependent chaperone ClpB [Beutenbergia cavernae DSM 12333]
 gi|229568044|gb|ACQ81895.1| ATP-dependent chaperone ClpB [Beutenbergia cavernae DSM 12333]
          Length = 868

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 74/212 (34%), Gaps = 14/212 (6%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F+++I +     R +++          +  +++    + +   K ++ ++AL+       
Sbjct: 319 FREHIEKDPALERRFQQVFVGEPSVEDTIAILRGIAPRYEAHHKVTIADSALVAAATLSD 378

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             +  +      I   +    +L   L S  +E           RL        L++ D 
Sbjct: 379 RYITGRQLPDKAIDLIDESASRLRMELDSSPIEVDELQRA--VDRLTMEELA--LERADD 434

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT-------AK 608
                 L     +    D R+      A ++  +    +  +++ ++ ++T        +
Sbjct: 435 PSSAERLEKLRADLA--DRREELAGLTARWEAEKAGHNRVGDLKARLDELTTAAERAMRE 492

Query: 609 GEAEKTAIL-ISILHEVHIQIHQIESQEAMIE 639
           G+  + + +    + EV  ++   E  EA I+
Sbjct: 493 GDLARASEIRYGEIPEVERELVSAERDEAAID 524


>gi|47228073|emb|CAF97702.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 750

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 44/119 (36%), Gaps = 1/119 (0%)

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            L        +E++    ++  ++  +    +  ++L  +        A  +        
Sbjct: 163 ALQRAEMERALERERIEKQQAIEKEEQEKARQRERELALERERQERELALVKEREEQELA 222

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             ++     +R R L RQ+ E ++++ +   + + E     +    E+  Q  ++E QE
Sbjct: 223 LARERALELERKRELERQELERQRELERQELERQRELERQELERQRELERQ-RELERQE 280



 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 86/233 (36%), Gaps = 20/233 (8%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           +++  +  ++ +    E     +  +K  + + ++   +  ++    + +L+      E 
Sbjct: 160 KSLALQRAEMERALERERIEKQQAIEKEEQEKARQRERELALERERQERELALVKEREEQ 219

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            L   L    A+  E+ +EL        EL++       +   Q+    +E+ ++     
Sbjct: 220 EL--ALARERALELERKRELER-----QELERQRELERQELERQRELERQELERQRELER 272

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----------LYKRFRLLSRQK 595
             EL +Q   + R+        +  +   R+  +Q L             +R R L +++
Sbjct: 273 QRELERQELERQRELERQKLEMQKELERQRELERQELEKAAAREAKAQEQERERALEQER 332

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHI---QIHQIESQEAMIEGFGKMS 645
            E E+ +     + E       I     +     ++ +IE ++A +E  G+ S
Sbjct: 333 LEKERAMEAARIEKEVALERERIEKEKALKEKCLEMERIEEEKAQLERLGRES 385


>gi|300176688|emb|CBK24353.2| unnamed protein product [Blastocystis hominis]
          Length = 287

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 74/228 (32%), Gaps = 14/228 (6%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           + LR  ++  +     +L      E +   R        +  +     L         L 
Sbjct: 36  ETLRTQHAAELAQLRSEL-----AELNEELRTRISETEMKRIQSILLTLQVGLSPPFSLQ 90

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E       +  P +      ++  +   N+ L+  ++ +++ +++ +      +
Sbjct: 91  SVGIPVEFTA-SAELPVPDLQAVLLDKIRHLETSNSSLRSTFNEIYNKYMQSEN-DRHAL 148

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            ++L +    E +K+++ Q+ +       ++             + L  +     R+ +E
Sbjct: 149 EEKLRDD--EEAMKRMETQIAELEQRVIGSDGATAVTGFSSNVEVILKDQRDRYKRRVDE 206

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +     +     +      L  +++++  Q+   +      + FG  S
Sbjct: 207 L-----EAERSRDKASLDSLYDVINQLKAQLSSEKGASRTYDRFGSTS 249


>gi|296272472|ref|YP_003655103.1| replicative DNA helicase [Arcobacter nitrofigilis DSM 7299]
 gi|296096646|gb|ADG92596.1| replicative DNA helicase [Arcobacter nitrofigilis DSM 7299]
          Length = 479

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 3/143 (2%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A+L +++ +P  +++    L    +     QK+++ +     E      E I +R+  
Sbjct: 10  ERAVLSSILFNPDEIEDVLGVLKPKDFYLPAHQKIFAVMEKLHNEDMPIDEEFIRRRVNS 69

Query: 544 RGF-GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +    ++L ++          + T E     V++     LA   +   +        + +
Sbjct: 70  KDVDDDILIEILSANPITNTLAYTREIKDASVKRELA-TLATTIKKVAIEDDIA-ATEAV 127

Query: 603 AQVTAKGEAEKTAILISILHEVH 625
             V        T    + L ++H
Sbjct: 128 DTVQNALYKITTDSASTELKDIH 150


>gi|159128802|gb|EDP53916.1| cell polarity protein (Tea1), putative [Aspergillus fumigatus A1163]
          Length = 1496

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/287 (10%), Positives = 81/287 (28%), Gaps = 24/287 (8%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R  G  A+++        +    +   +    +  + R                      
Sbjct: 1068 RIAGLEAYQEQASREGLQLRRQLQAIMKESQAHAAENRELKSKLENQQREAGALAIQHAA 1127

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                + +R         +                  +   Q+L  S     +L      R
Sbjct: 1128 LKDLLAERGVSYTDSRRSPRLESPGSRFGTPEQTRLRELEQQLSASLKAHEELKASFETR 1187

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E              +E+ ++L +      + Q    ++       K    E    +   
Sbjct: 1188 EQEA-------DRAYREKLEQLEN------DYQSAVHYVKGTEKMLKRMKDELTRYKAQN 1234

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-----LSRQKEEI 598
                  L+   R +  A    +   A     R   QQ+++  ++        L  Q  ++
Sbjct: 1235 AKIQADLEAAQRSISQASGLGSEPPAEWESERSKLQQSISDLQQDTASSIANLESQIAKL 1294

Query: 599  EKQIAQVTAKGEAEKTA------ILISILHEVHIQIHQIESQEAMIE 639
            ++ ++   A+ +  ++        LI+   +   ++ Q++ + A++E
Sbjct: 1295 KEDLSAAEAEKDKSRSEYESVKQELIAAAEKNRAELEQLKQENALLE 1341


>gi|70989075|ref|XP_749387.1| cell polarity protein (Tea1) [Aspergillus fumigatus Af293]
 gi|66847018|gb|EAL87349.1| cell polarity protein (Tea1), putative [Aspergillus fumigatus Af293]
          Length = 1496

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/287 (10%), Positives = 81/287 (28%), Gaps = 24/287 (8%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R  G  A+++        +    +   +    +  + R                      
Sbjct: 1068 RIAGLEAYQEQASREGLQLRRQLQAIMKESQAHAAENRELKSKLENQQREAGALAIQHAA 1127

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                + +R         +                  +   Q+L  S     +L      R
Sbjct: 1128 LKDLLAERGVSYTDSRRSPRLESPGSRFGTPEQTRLRELEQQLSASLKAHEELKASFETR 1187

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E              +E+ ++L +      + Q    ++       K    E    +   
Sbjct: 1188 EQEA-------DRAYREKLEQLEN------DYQSAVHYVKGTEKMLKRMKDELTRYKAQN 1234

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-----LSRQKEEI 598
                  L+   R +  A    +   A     R   QQ+++  ++        L  Q  ++
Sbjct: 1235 AKIQADLEAAQRSISQASGLGSEPPAEWESERSKLQQSISDLQQDTASSIANLESQIAKL 1294

Query: 599  EKQIAQVTAKGEAEKTA------ILISILHEVHIQIHQIESQEAMIE 639
            ++ ++   A+ +  ++        LI+   +   ++ Q++ + A++E
Sbjct: 1295 KEDLSAAEAEKDKSRSEYESVKQELIAAAEKNRAELEQLKQENALLE 1341


>gi|2198820|gb|AAD12485.1| Cux/CDP(1B1) [Mus musculus]
          Length = 1293

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 87/256 (33%), Gaps = 22/256 (8%)

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
                      +K+   +    +A+++++++  Q   ++        ++  ++   +   
Sbjct: 1   TLEEYNKEFAEVKN---QEVTIKALKEKIREYEQTLKSQAETIALEKEQKLQNDFAEKER 57

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLIN--HPAILQEQYQELADIRYDNNELQKLWSF 521
           +          KL +     +   L T +      +   + +   +     +E++ + + 
Sbjct: 58  KLQETQMSTTSKLEEAEHKLQT--LQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTD 115

Query: 522 LF--SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV----------RDAGLWSATTEA 569
           L   +   E      E + ++L        L    ++               +  A  E 
Sbjct: 116 LERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVAIEVLTRSSLEVELAAKER 175

Query: 570 NIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQIAQVTAKGEA-EKTAILISILHEVHIQ 627
            I  + +  Q+  A   + R  S  Q  ++E+Q+    +  +  E+     +   EV  +
Sbjct: 176 EIAQLVEDVQRLQASLTKLRENSASQISQLEQQLNAKNSTLKQLEEKLKGQADYEEVKKE 235

Query: 628 IHQIESQE-AMIEGFG 642
           ++ ++S E A  EG G
Sbjct: 236 LNTLKSMEFAPSEGAG 251


>gi|89094153|ref|ZP_01167096.1| replicative DNA helicase [Oceanospirillum sp. MED92]
 gi|89081628|gb|EAR60857.1| replicative DNA helicase [Oceanospirillum sp. MED92]
          Length = 464

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 10/179 (5%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           +    L K K+       E ++L  L+          + + D  +   E ++++  +   
Sbjct: 6   ISDEDLAKIKVPPHSMEAEQSVLGGLMLDNNAWDTVSEIVVDDNFYRQEHRQIYRTMRKL 65

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
             +        + + L          +L+       L             + Y + +   
Sbjct: 66  VNDGNPLDVVTLSEELDRT------AELESAGGLDYLIELAKNTPSASNIRAYSEIV--- 116

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
            R R L RQ      +IA      E   +  L++   +   QI +    +   EG  ++
Sbjct: 117 -RDRALLRQMISAANEIADGAFNPEGRSSEELLNSAEQKIFQIAENRPNQGGPEGVNEL 174


>gi|291562184|emb|CBL41000.1| RecA-family ATPase [butyrate-producing bacterium SS3/4]
          Length = 633

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 30/144 (20%)

Query: 1   MNYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
           M Y ++ I        + + + GQ     R                HD    S     +K
Sbjct: 1   MYYTQEQID-CANQADLVSFLQGQGEQLTRAGQEYRWKR-------HD----SLTIRGNK 48

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL---------------AAIAGVPLPVVD 104
             +Y  S    G  + F+    G SF E+++ L               A+ +   LP  +
Sbjct: 49  --WYRHSQSKGGAPIDFVMEFFGKSFTEAIELLTGEKGAAQPPDRPSPASFSDFRLPPRN 106

Query: 105 PKIEKKEKIQTDLIRLIEVATDFF 128
           P         T   R+ E  + FF
Sbjct: 107 PDNRIARNYLTAARRIDEDVSGFF 130


>gi|134095343|ref|YP_001100418.1| replicative DNA helicase [Herminiimonas arsenicoxydans]
 gi|133739246|emb|CAL62295.1| Replicative DNA helicase [Herminiimonas arsenicoxydans]
          Length = 461

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/199 (11%), Positives = 67/199 (33%), Gaps = 19/199 (9%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 +   ++       E ++L  L+   A        +    +   + + ++  +  
Sbjct: 3   NRADPQVDSLRVPPHSIEAEQSVLGGLLLDNAAWDRIADFVHQDDFYRYDHRIIFQHIVR 62

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                +      + + L   G  E +  +     +A   +  + ANI    +  +    L
Sbjct: 63  LINGSRPADVITVFEALTNSGKAEEVGGV--SYLNALAQNTPSAANIRRYAEIVRDRGIL 120

Query: 585 YK---------------RFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQ 627
            K               + + + +  +E E +I  +  +G   A+    +  +L +V  +
Sbjct: 121 RKLITVSDEISGQAFNPQGKEVKQMLDEAESKIFAIAEEGSRGAQGFQEIQPLLTQVVER 180

Query: 628 IHQIESQEAMIEGFGKMSG 646
           I ++ ++++  +  G  +G
Sbjct: 181 IDELYNRDSTSDITGVPTG 199


>gi|92113020|ref|YP_572948.1| replicative DNA helicase [Chromohalobacter salexigens DSM 3043]
 gi|91796110|gb|ABE58249.1| primary replicative DNA helicase [Chromohalobacter salexigens DSM
           3043]
          Length = 462

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 47/161 (29%), Gaps = 10/161 (6%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                K+       E ++L  L+   +      + L+   +   E + +++ +       
Sbjct: 10  ETAALKVPPHSLEAEQSVLGGLMLENSAWDTVSERLSADDFYRYEHRLIFNAMAQLADAG 69

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                  + + L  R   E +  L      A    + +            +A     R R
Sbjct: 70  HPLDVVTLSEALENRDQLESVGGLAYLAELARNTPSASNI----------RAYTDIVRER 119

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
              R+  +   QIA      +      L++    +  QI +
Sbjct: 120 ATLRKLIQAAHQIADGAFAPQGRPADELVNEAERLVFQISE 160


>gi|159116528|ref|XP_001708485.1| Protein 21.1 [Giardia lamblia ATCC 50803]
 gi|157436597|gb|EDO80811.1| Protein 21.1 [Giardia lamblia ATCC 50803]
          Length = 681

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 71/205 (34%), Gaps = 25/205 (12%)

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
           +N R +  K   + L   +++    +   +L+E      L +   IL+E  + L+D+   
Sbjct: 248 RNLRKQYNKVVRENLEMRNVMDELSTTLENLKENN--AQLTSDRDILKETNKHLSDMD-- 303

Query: 512 NNELQKLWSFLFSDFVEQKYFL-PEEIHQ------RLCERGFGELLKQLDRQVRDAGLWS 564
               ++L   + +   E        E+        +  E     +   LD+ + ++ + S
Sbjct: 304 ----RRLKQ-VINHTGEGDVVECVSELVNTMREQVKAREEDLRNVSNALDQVISESRVMS 358

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA---------EKTA 615
           +       D  +       L ++     R+  E+E ++     + E          E   
Sbjct: 359 SEASDLKKDRARLLNDVKDLRQKLYDKEREHRELEIKLETSNREAEQLVYERQEVEETLT 418

Query: 616 ILISILHEVHIQIHQIESQEAMIEG 640
            L + L      +  I+   A IEG
Sbjct: 419 RLTNELQSAKTLLQIIKQGAASIEG 443


>gi|270160281|ref|ZP_06188936.1| conjugative transfer relaxase protein TraI [Legionella longbeachae
            D-4968]
 gi|269987203|gb|EEZ93459.1| conjugative transfer relaxase protein TraI [Legionella longbeachae
            D-4968]
          Length = 1956

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 20/189 (10%)

Query: 52   SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKK 110
            S   +   G ++ F     G+    +    G S F E++Q  A      +P  + K+ +K
Sbjct: 1576 SLKIDLDSGLWHHFETGESGNLFHLIEREKGLSGFKETLQHAAQYIHY-IPEYERKVPQK 1634

Query: 111  --EKIQTDLIR-LIEVATDFFHHS--LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
              EK + ++     ++A   F  S  ++    ++            HA   F       +
Sbjct: 1635 LNEKKKREVKEGKRQLAQKLFQQSQPIQGTIAEKYLIIHRGLAHYEHADLRFCRSVYTKT 1694

Query: 166  RYSLRE-------------HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRS 212
            +   +              ++     ++     A      D+   ++    N  +   R 
Sbjct: 1695 QDGQKHVPALLAFSKDEQGNIHHVQITKLDPNSANKDKSCDSVKQTFGLINNYFVNLNRQ 1754

Query: 213  SRGQVIAFG 221
             +G +  F 
Sbjct: 1755 GKGDIAYFT 1763


>gi|260914152|ref|ZP_05920625.1| replicative DNA helicase DnaB [Pasteurella dagmatis ATCC 43325]
 gi|260631785|gb|EEX49963.1| replicative DNA helicase DnaB [Pasteurella dagmatis ATCC 43325]
          Length = 467

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 44/128 (34%), Gaps = 8/128 (6%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
             + R    SL +  +       E ++L  ++ HPA        L    +     + ++ 
Sbjct: 3   KNTSRNTPQSLEQIVVPPHSLEAEQSVLGGILIHPAHWDSISDMLIPDDFYLAGHRVIFQ 62

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDV 574
            + +   + K      I++ L E+   +       L +L +      + +  + A IV  
Sbjct: 63  EMENLVRQGKPIDLINIYEFLREKNLSDEVGGFAYLAELSK--NTPSVSNIVSYAAIVRD 120

Query: 575 RQGYQQAL 582
           R   +  +
Sbjct: 121 RAILRDLI 128


>gi|160946185|ref|ZP_02093396.1| hypothetical protein PEPMIC_00147 [Parvimonas micra ATCC 33270]
 gi|158447708|gb|EDP24703.1| hypothetical protein PEPMIC_00147 [Parvimonas micra ATCC 33270]
          Length = 442

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 56/170 (32%), Gaps = 16/170 (9%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  +I  P   +  +++L    +     + ++S +     E     P  +  ++ 
Sbjct: 9   AEKCVLSIMITEPNKRELVFEKLKRKDFYLGWHKDIFSAILELSRENTNVDPITVINKME 68

Query: 543 ERGFG-----------ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRL 590
             GF            E++  +              + +          ++     +   
Sbjct: 69  AMGFDTESNNGIVGVVEIVNAVAFPSNIENYCKIVKDKSDTRNLLFILDSIKDRAYKNED 128

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             +  E IE QI ++       ++   ++ + +   ++ ++  + + I+G
Sbjct: 129 YDKVLESIEGQIFEL----SQNESRTGLTHIKDTLKEVIELLDERSKIKG 174


>gi|56205922|emb|CAI24424.1| myosin XVIIIa [Mus musculus]
          Length = 1998

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 86/276 (31%), Gaps = 15/276 (5%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             +      ++  VD   KR  +        E+       +   +   D        Q ++
Sbjct: 1366 EWRLKYERAVREVDFTKKRLQQELEDKMEVEQQSRRQLERRLGDLQADSDESQRALQQLK 1425

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNA---RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             + Q+L  +             +N    + + +             + KL ++   RE  
Sbjct: 1426 KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEETQREKLQREKLQREKD 1485

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +L         L E +     +   + ++      + S   E +    +E          
Sbjct: 1486 ML---------LAEAFSLKQQMEEKDLDIAGFTQKVVSLEAELQDISSQESKDEASLAKV 1536

Query: 547  GELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
             + L+ L+ +V+D          +I     ++Q   Q    Y+  +   R+K E+E +++
Sbjct: 1537 KKQLRDLEAKVKDQEEELDEQAGSIQMLEQLKQMEVQLEEEYEDKQKALREKRELESKLS 1596

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             ++ +           +  ++      +   + M++
Sbjct: 1597 TLSDQVNQRDFESEKRLRKDLKRTKALLADAQIMLD 1632



 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/297 (9%), Positives = 76/297 (25%), Gaps = 34/297 (11%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY---- 422
             +   ++  ++    + +      + +      + A     + +    ++D   +     
Sbjct: 1471 QREKLQREKLQREKDMLLAEAFSLKQQMEEKDLDIAGFTQKVVSLEAELQDISSQESKDE 1530

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                 ++ +L+ L  K   +                 K    +L +    K K  ++   
Sbjct: 1531 ASLAKVKKQLRDLEAKVKDQEEELDEQAGSIQMLEQLKQMEVQLEEEYEDKQKALREKRE 1590

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQR 540
             E+ L            E  + L         L      +               ++  +
Sbjct: 1591 LESKLSTLSDQVNQRDFESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQLKNQ 1650

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            L E  F          V+         E   + +    +   AL ++   L R+K EI+ 
Sbjct: 1651 LEESEFT-----CAAAVKARKAMEVEMEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQN 1705

Query: 601  QIAQVTAKGE-----------------------AEKTAILISILHEVHIQIHQIESQ 634
            ++ +                               +         E+  ++  ++SQ
Sbjct: 1706 RLEEDQEDMNELMKKHKAAVAQASRDMAQMNDLQAQIEESNKEKQELQEKLQALQSQ 1762



 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1738 LQAQIEESNKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFEK 1794

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1795 TQVKRLENLASRLKETMEKLTEERDQRAAAENREKEQNKRLQRQLRDTKEEMSELARKEA 1854


>gi|332290607|ref|YP_004421451.1| hypothetical protein pRAM32_18 [Candidatus Rickettsia amblyommii
           AaR/SC]
 gi|330723996|gb|AEC46365.1| hypothetical protein pRAM32_18 [Candidatus Rickettsia amblyommii
           AaR/SC]
          Length = 710

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 53/390 (13%), Positives = 101/390 (25%), Gaps = 67/390 (17%)

Query: 52  SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK----- 106
           S   N S+G +   S     +   F+      S  +S++ +A +AG+             
Sbjct: 170 SLSMNLSEGTWIRHSSGASDNIFGFVQEGASVSKRQSLEIVAELAGIRAESSSYDYRTYV 229

Query: 107 -IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
              +  K Q  L    E    +      +       +  ++           +  Y+   
Sbjct: 230 ATSRANKEQAKLQVANEWVAAY------DKITNAESFDPNKHLKGMMQHNTLEAVYSYKD 283

Query: 166 RYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
                     +  S+E   +  L +    +AT  +       F  +              
Sbjct: 284 AEGKLLGYVVRCVSKEDSKKQTLPVTYCYNATKQEYNWRLKGFTDKG------------- 330

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM-DVL 284
                               K ++    A               SS  I++VEG    V 
Sbjct: 331 -------------------DKPIFGLEKA-------------VCSSKPILIVEGEKAAVS 358

Query: 285 SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344
           +       +VVS +G +    ++         +++  D D PG +AA    D        
Sbjct: 359 AAKILPDYDVVSWMGGSNAADKVNWNQLEWCDVIIWPDNDQPGFKAAGIIKD------KI 412

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTA---FEKLIVESLPLVDMLWKRETENRSFNTPDER 401
               + +      DP               EK  +       M  +   E          
Sbjct: 413 NKANDHIGFVSVVDPTKLQFNGSIHKDLLPEKWDLADRLPDSMTIENIKEAIENVRSAHL 472

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
              +I         K  +   + SQ + +R
Sbjct: 473 DLNQIQSVIQGMTHKAPQEVSHVSQQLLER 502


>gi|317402868|gb|EFV83410.1| DnaB protein [Achromobacter xylosoxidans C54]
          Length = 460

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 64/199 (32%), Gaps = 21/199 (10%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
              S L   ++       E ++L  L+   A        L +  +  ++ + +W  +   
Sbjct: 4   PADSQLEYLRVPPHSIEAEQSVLGGLLLDNAAWDRIADVLVEEDFYRHDHRLIWHHIARL 63

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
               +      +H+ L   G  E    L        L   T  A  +       +  A+ 
Sbjct: 64  IGLARPADVITVHESLVSAGKAEDAGGLAYLN---ALAHNTPSAANIRRYGEIVRERAML 120

Query: 586 KRFRLLSRQK---------EEIEKQIAQVTAK---------GEAEKTAILISILHEVHIQ 627
           ++   ++ +          +E  + + +  +K           A     +  +L +V  +
Sbjct: 121 RKLVSIADEISSAAMNPQGKEARQLLDEAESKVFQIAQEGARGAAGFQEIQPLLTQVVER 180

Query: 628 IHQIESQEAMIEGFGKMSG 646
           I ++  +E+  +  G  +G
Sbjct: 181 IDELYHRESTSDVTGVPTG 199


>gi|302834834|ref|XP_002948979.1| hypothetical protein VOLCADRAFT_89403 [Volvox carteri f.
           nagariensis]
 gi|300265724|gb|EFJ49914.1| hypothetical protein VOLCADRAFT_89403 [Volvox carteri f.
           nagariensis]
          Length = 2628

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 72/232 (31%), Gaps = 19/232 (8%)

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                +  ++ ++ +L +K     +   R+  +    R +    + L +S +        
Sbjct: 751 EAKSLADTMQAQVNELREKLAAATAESARHAGRADDWRQRCTAMESLRESEMAMRNALAA 810

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF-------LFSDFVEQKYF 532
              +   LL T  +   + Q   +EL        E Q +             D       
Sbjct: 811 EKAQLTTLLATAQHKAEVAQRGLEELQSQVRSRTEHQVVLEARMSAQTTALEDARSALAM 870

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL- 591
              E ++ L +    E L+        A +     E    ++     +    ++R + L 
Sbjct: 871 AEAERNRALADAKVAEQLR--ANSEATAAMRERELERRTANLESDLARLRGDHERQQTLF 928

Query: 592 -------SRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634
                  + Q  E+ ++   +    +  +         + E+  +I ++++Q
Sbjct: 929 HHSVEAATAQLREVREEANDMRRARDEAERSLEEARGQVSELRGRIVELQAQ 980



 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/288 (9%), Positives = 74/288 (25%), Gaps = 17/288 (5%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   +   +       +++               S        +         +  + + 
Sbjct: 743  EELSQTRQEAKSLADTMQAQVNELREKLAAATAESARHAGRADDWRQRCTAMESLRESEM 802

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGY--GRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                   A+     QL     T        +   +  + + +     +++  + +  + +
Sbjct: 803  ---AMRNALAAEKAQLTTLLATAQHKAEVAQRGLEELQSQVRSRTEHQVVLEARMSAQTT 859

Query: 478  KKPSLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                 R A  +     + A+   +  ++L     ++     +                  
Sbjct: 860  ALEDARSALAMAEAERNRALADAKVAEQLRA---NSEATAAMRERELERRTANLESDLAR 916

Query: 537  IH------QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            +       Q L          QL     +A       +     + +   Q   L  R   
Sbjct: 917  LRGDHERQQTLFHHSVEAATAQLREVREEANDMRRARDEAERSLEEARGQVSELRGRIVE 976

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAILI--SILHEVHIQIHQIESQEA 636
            L  Q  E+  Q+A     G     + L+    L +   Q+ + +++ A
Sbjct: 977  LQAQVSELNSQLAAARGVGGGAAVSDLVEGQKLRDAEAQLRETQAELA 1024


>gi|289614420|emb|CBI58814.1| putative MEI5 protein [Sordaria macrospora]
          Length = 880

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 54/148 (36%), Gaps = 8/148 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQ- 552
            ++ + + +   ++  N  L      +  ++   +    ++  +RL +   G  ++++  
Sbjct: 94  KLVADVFGQFIMLKEKNERLSISHREVLDEYHRYRS-ELDDWKKRLEKEKEGLEDVIQSK 152

Query: 553 ----LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               L    + A L     ++              L +      R+ +E+ K   +  A 
Sbjct: 153 VQEVLQLHAQRASLQGNLEDSAKRAAAAVENGERELMRLKEEKERELQELRKDKERELAA 212

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636
            + +K   L+++  +   ++ ++   +A
Sbjct: 213 LKEDKEKELVALKEDKEQELTKLREDQA 240


>gi|253582125|ref|ZP_04859349.1| replicative DNA helicase [Fusobacterium varium ATCC 27725]
 gi|251836474|gb|EES65011.1| replicative DNA helicase [Fusobacterium varium ATCC 27725]
          Length = 446

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/144 (9%), Positives = 49/144 (34%), Gaps = 10/144 (6%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
             +   +        E ++L  +     +  +  + L+   +  N  + ++  +   + +
Sbjct: 2   PEIENLRKIPSDLEAERSVLGGIFLKQDVFGDIIEILSPDDFYKNAHKIIYETMREIYNK 61

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            +   P  +  RL +       ++ +    +   +    E         Y + +    + 
Sbjct: 62  GEVLDPLVVMNRLRKN------EKFEEVGGEQIFYDIVEEVPTAANITAYAKIV----KE 111

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAE 612
           + + R+  ++  +I ++T  G  E
Sbjct: 112 KAILRRLGDVGTKIVEMTYSGYEE 135


>gi|321156804|emb|CBW38788.1| putative uncharacterized protein [Streptococcus pneumoniae]
          Length = 361

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 28/122 (22%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
           I++    I I ++            N +   +          P HD    SF    +   
Sbjct: 3   IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           +  FS  ++GD + F+  + G SF +++  L+            +  ++++ +     L 
Sbjct: 47  FKWFSRDIQGDVIDFVRLVKGISFKKALAFLSE------EPFQKEAVQEKRERPFYYPLN 100

Query: 122 EV 123
            +
Sbjct: 101 RI 102


>gi|319412027|emb|CBY91960.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 361

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 28/122 (22%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
           I++    I I ++            N +   +          P HD    SF    +   
Sbjct: 3   IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           +  FS  ++GD + F+  + G SF +++  L+            +  ++++ +     L 
Sbjct: 47  FKWFSRDIQGDVIDFVRLVKGISFKKALAFLSE------EPFQKEAVQEKRERPFYYPLN 100

Query: 122 EV 123
            +
Sbjct: 101 RI 102


>gi|317126691|ref|YP_004100803.1| replicative DNA helicase [Intrasporangium calvum DSM 43043]
 gi|315590779|gb|ADU50076.1| replicative DNA helicase [Intrasporangium calvum DSM 43043]
          Length = 609

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 65/195 (33%), Gaps = 20/195 (10%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           + +  +      +L  +    E ++L  ++     + +  ++L    +     + ++  +
Sbjct: 12  ATKAREGGPPDDRLPPQDVGAEQSVLGGMLLSKDAIADCVEQLKGTDFYRPAHELIYDAV 71

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
              +   +      +   L +RG    L ++  Q     L ++   A        Y Q +
Sbjct: 72  LDLYGRGEPADAITVADELTKRGD---LTRVGGQAYLHQLIASVPTAA---NAGYYAQIV 125

Query: 583 ALYKRFRLLSRQKEEIEKQIAQ---VTAKGE-AEKTAILISILHEVHIQIHQIES----- 633
           A     R + R+  E   +I Q       G+  +      + ++ V  +    +      
Sbjct: 126 A----ERAVLRRLVEAGTRIVQLGYAQGGGDVEDIVNAAQAEVYSVADRRGGEDYHAIGD 181

Query: 634 -QEAMIEGFGKMSGR 647
             EA ++     SGR
Sbjct: 182 ILEATVDEIEVASGR 196


>gi|269792269|ref|YP_003317173.1| replicative DNA helicase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099904|gb|ACZ18891.1| replicative DNA helicase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 447

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 49/149 (32%), Gaps = 10/149 (6%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S +   ++       E + L   +     +    + L+ + + +   + ++  +     +
Sbjct: 2   SEVTFDRVPPHNLEAERSALGACLLDREAMLAVTELLSPLDFYDQRHRLIFELIQDMARK 61

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            K             +G       +  ++  +   +A  ++        Y   +    + 
Sbjct: 62  DKVVDALTFLDEAQNKG-------MLERMGGSAFVAALADSVTTTANAEYHARI---VKD 111

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
           + + R+  ++   IA++  + +  K  IL
Sbjct: 112 KAIHRRLIQVGGDIARLGYQEDRPKEEIL 140


>gi|257057884|ref|YP_003135716.1| primary replicative DNA helicase [Saccharomonospora viridis DSM
           43017]
 gi|256587756|gb|ACU98889.1| primary replicative DNA helicase [Saccharomonospora viridis DSM
           43017]
          Length = 459

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 8/71 (11%), Positives = 25/71 (35%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +   + +  E ++L  ++     + +  + L    +     Q ++  +   +   +   P
Sbjct: 20  RQPPQDTAAEQSVLGGMLLSKDAIADVVEVLRPGDFYRPAHQAIYDCILDLYGRGEPADP 79

Query: 535 EEIHQRLCERG 545
             +   L  RG
Sbjct: 80  ITVSAELERRG 90


>gi|119484327|ref|ZP_01618944.1| replicative DNA helicase [Lyngbya sp. PCC 8106]
 gi|119457801|gb|EAW38924.1| replicative DNA helicase [Lyngbya sp. PCC 8106]
          Length = 638

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 56/180 (31%), Gaps = 16/180 (8%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           +      L   +LS +    E A+L  ++  P  +    + L    +     Q ++    
Sbjct: 2   KNRSNFQLPSDRLSPQNIEAEEAILGGILLDPEAISRVAELLDPSCFAIQAHQAIYRTTL 61

Query: 524 SDFVEQKYFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVD 573
           +  ++ K      +   L +              +L+ +    V          E  +  
Sbjct: 62  NLHLQGKPTDLMTVTTWLADHDQLEKVGGQMKLAQLVDRTVSAVNIDQYALLVIEKAMRR 121

Query: 574 -VRQGYQQALAL-YKRFRLLSRQKEEIEKQIAQVTAKGEAEKT----AILISILHEVHIQ 627
            + Q   + + L Y     +    ++ E+QI  +T     +        LI+   ++  +
Sbjct: 122 NLIQAGHETINLGYDTAVDIEEVLDQAEQQIFNITQVRPQQNLVSIAETLINTFQDIEDR 181


>gi|15639052|ref|NP_218498.1| replicative DNA helicase (dnaB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025292|ref|YP_001933064.1| replicative DNA helicase DnaB [Treponema pallidum subsp. pallidum
           SS14]
 gi|6014984|sp|O83097|DNAB_TREPA RecName: Full=Replicative DNA helicase
 gi|3322317|gb|AAC65054.1| replicative DNA helicase (dnaB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017867|gb|ACD70485.1| replicative DNA helicase DnaB [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059474|gb|ADD72209.1| replicative DNA helicase [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 438

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 44/130 (33%), Gaps = 3/130 (2%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
              +  +KGK+       E A+L  ++   + L    ++L+   + +   Q+++  L   
Sbjct: 5   PNPTQELKGKIPPHNLEAERAVLGAVLLDDSALSTATEQLSASSFYSAAHQRIFQALVEL 64

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
               +      + + L      E L  +      A L  A   A  V+         A+ 
Sbjct: 65  SDLGQRPDILVLSEHLRSC---EALDFVGGSAYVASLTDAVPSAANVEYYTRIVCDAAMR 121

Query: 586 KRFRLLSRQK 595
           +    ++R  
Sbjct: 122 RSLLKVARII 131


>gi|293400281|ref|ZP_06644427.1| replicative DNA helicase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306681|gb|EFE47924.1| replicative DNA helicase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 448

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 12/162 (7%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWSFLFSDFVEQKYF 532
            +     +  E A+L  ++ +P++    Y + L    +  +  Q+++S +       K  
Sbjct: 2   SRELPHSNEAEQAILGGMMVYPSVSGVVYDQGLEPSDFYLDIHQRIFSAMMDITNSGKPV 61

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               +  RL +      ++QL   V  A      ++  I      Y   + + K    L 
Sbjct: 62  DVTTLIARLQD------IEQL-HLVGGADYIIKLSDTAISAANSMY--YIEIIKSRAHLR 112

Query: 593 RQKEEIEKQIAQ--VTAKGEAEKTAILISILHEVHIQIHQIE 632
           R  E  ++   +   TA    +        +  V       +
Sbjct: 113 RLIETAQEIAEEGFDTASSLDDIMDKAERDILNVTRDRKATD 154


>gi|225075190|ref|ZP_03718389.1| hypothetical protein NEIFLAOT_00190 [Neisseria flavescens
           NRL30031/H210]
 gi|224953365|gb|EEG34574.1| hypothetical protein NEIFLAOT_00190 [Neisseria flavescens
           NRL30031/H210]
          Length = 471

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 56/177 (31%), Gaps = 12/177 (6%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 +    L    +  E ++L  L+   +        ++   +  +E + ++  + +
Sbjct: 11  PPEDREISALSLPPHSTEAEQSVLGGLMLENSAWDRIADVVSGEDFYRHEHRLIFRAIAN 70

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
              E +      + + L         ++L+       L +           + Y + +  
Sbjct: 71  LINESRPADVITVQESLERN------EELEVAGGFNYLITLAQNTPSAANIRRYAEIV-- 122

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
             R R + RQ  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 123 --RERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 175


>gi|167751166|ref|ZP_02423293.1| hypothetical protein EUBSIR_02152 [Eubacterium siraeum DSM 15702]
 gi|167655881|gb|EDS00011.1| hypothetical protein EUBSIR_02152 [Eubacterium siraeum DSM 15702]
          Length = 399

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 53/399 (13%), Positives = 106/399 (26%), Gaps = 49/399 (12%)

Query: 5   RDFIKDLLIHIPISNLIGQY--VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           ++ I+     + +   + +       +             C  HD    S    + +  +
Sbjct: 14  KEQIERARN-VDMVEFLERTEGFSVKKSGNGYR-------CDVHD----SLFITNDRKGW 61

Query: 63  YCFSCHVKGD-HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           Y  S    G+  ++F   + G SF E+V+ L     +      PK   K+K   + I   
Sbjct: 62  YWNSRDEGGNNAIAFCMKIYGQSFTEAVKSLCGDIQME---YSPKYNTKKKSSEEKIEAH 118

Query: 122 EVA--TDFFHHSLKNARDKRLHYYLDERGIDSHAIEM---------------FKLGYAPD 164
            +         + +      + Y    RG++ + +                  +L     
Sbjct: 119 RLILPEQDHKENGQRNYSNVIAYLCKTRGLEYNIVNQLIYDRKLYQGIGYSGLQLVGYDS 178

Query: 165 SRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT 224
           S             +  + +   L               +    P    RG    +    
Sbjct: 179 SNTPFYRFKNDIPTNAPEYVTIELQAQKQKGEKYICEGFSGEHIPELIERGITKKYVNMI 238

Query: 225 LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284
              G+ +    +    +       Y          K     +   + + + + E  +D+L
Sbjct: 239 AVNGDGIMSRYAFCRSVSDSST--YRVDL--PGSDKKYSFSLLGTNKNKLYVFESVIDML 294

Query: 285 SL---------CQAGVQNVVSSLGTALTEYQLRLLWKLSP-RIVLCFDGDDPGLRAAYKA 334
           S            A  Q  + SLG          L       I  C D DD G  A  + 
Sbjct: 295 SYASFYAINNGQDAWQQLTMLSLGGKSDVALDEFLKNKPIAEITFCLDNDDAGKHATEQL 354

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
            D         ++   +     +D  +F     K   + 
Sbjct: 355 SDKYALKGYAVSKDIPLNKDFNDDLKAFRALNEKNTVQA 393


>gi|56419728|ref|YP_147046.1| chromosome segregation ATPase [Geobacillus kaustophilus HTA426]
 gi|56379570|dbj|BAD75478.1| chromosome segregation ATPase (SMC) [Geobacillus kaustophilus
           HTA426]
          Length = 1187

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    E +  +L E    E + +L+R V       A  EA    +++         +R +
Sbjct: 675 RNRELETLSAKLQE--MDETIARLERAVAAKRHELAEQEAQADALQEEVAALREALQRQK 732

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              R+ E  +K+I +  A  + EK       + E++ ++  I+ Q
Sbjct: 733 DEQRELEWQKKRIDERLALYDEEKANHE-REMAELNRRLGAIDRQ 776



 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 87/290 (30%), Gaps = 30/290 (10%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
             +         L  E     +                        L   +  I D   R 
Sbjct: 740  WQKKRIDERLALYDEEKANHEREMAEL-----NRRLGAIDRQLEQLAEKLQAIDDDISRL 794

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
               +      ++  Q  ITE        K+  +H  +K        +  ++G    +   
Sbjct: 795  QAQKQTEQTTKEALQAAITEQKIALAETKERVKHARRKVEEWEAELAETIRGLKEAE--- 851

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            RE A L   +  P   +E+ ++L   + ++ + + L   L +   EQ+    +   + L 
Sbjct: 852  RERAALDAEMEAPEWNEEEIEQLRKQKLEDKQ-KTL--ELIASRREQR-LDFQRRLEHLE 907

Query: 543  ER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-----------FR 589
            +         KQL   V+D  +     +  + ++    ++   L                
Sbjct: 908  QEWKETKRQHKQLADVVKDEEVKLNRLDVELENLLVRLREEYGLSFEAARSAYPLEIGAD 967

Query: 590  LLSRQKEEIEKQIAQVTAKG-----EAEKTAILISILHEVHIQIHQIESQ 634
               ++ + I++ + ++         E E+ +     L E    + + ++ 
Sbjct: 968  EARKRVKLIKRAMEELGTVNLGAIDEYERVSERHRFLSEQKTDLEEAKAT 1017


>gi|299541792|ref|ZP_07052115.1| replicative DNA helicase [Lysinibacillus fusiformis ZC1]
 gi|298725530|gb|EFI66171.1| replicative DNA helicase [Lysinibacillus fusiformis ZC1]
          Length = 453

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 12/184 (6%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S  +  ++       E +++  +   P  L    + L    +  N  +K++  +     +
Sbjct: 2   SEPMMDRVPPHNREAEQSVIGAIFLEPQALITASEILLADDFYLNAHKKIFETMLRLSDQ 61

Query: 529 QKYFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
            K      + + L  +             EL   +      A       E  ++      
Sbjct: 62  GKAIDVVTVTEELSAKKEIEDVGGLSYLLELANAVPTAANVAHYAKIVEEKALLRRLIRV 121

Query: 579 QQALAL--YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +    Y R   +     E EK++ +V  +  A     +  +L E    I Q++SQ+ 
Sbjct: 122 ATKIVEDGYTREDEVEALLGEAEKKMMEVANRKNAGDFKHVKDVLVETFDNIEQLQSQKG 181

Query: 637 MIEG 640
            + G
Sbjct: 182 EVTG 185


>gi|73950719|ref|XP_848596.1| PREDICTED: similar to ciliary rootlet coiled-coil, rootletin [Canis
           familiaris]
          Length = 797

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/329 (10%), Positives = 89/329 (27%), Gaps = 9/329 (2%)

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED-PDSFIRCYGKT 369
            +    ++   +G    L    ++++  L     G           +D   S  R    +
Sbjct: 418 KRRLKEVLDASEGRTIKLELQRRSLEGELQRSRLGLSDREAQAQALQDRVASLQRQVADS 477

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             +   ++           + E       D+   L   L      +   + +  + Q   
Sbjct: 478 EVKAGTLQLTVERLSGALVKVEESEGLLRDKVQGLTEALAQNSASLTSSQDKNLHLQKAL 537

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
              +   Q          +   +  +     G   + M+  L   +L +  +  +   L 
Sbjct: 538 TACEHDRQVLQERLEAARQALSEARKQSSSLGEQVQTMRGELADLELQRAEAEGQLQQLQ 597

Query: 490 TLINHPA-----ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            ++          L    +   + R     L  L   L     E++      +       
Sbjct: 598 EVLRQRQEGEAAALHTVQKLRDERRLLQERLDSLQGALAQREAEKREVERSALRLEKDRV 657

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               +L +++R+   +   +    A    + +    A           RQ + +E Q+  
Sbjct: 658 ALKRMLDKVEREKLRSHEDTVRLNAERGRLDRTLTGA---ELELAEAQRQIQLLEAQVVA 714

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIES 633
           +       +         E+  ++ ++ S
Sbjct: 715 LEQDQSPGRLEADEQRQLELQQEVERLRS 743


>gi|167524847|ref|XP_001746759.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775029|gb|EDQ88655.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1045

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 88/291 (30%), Gaps = 12/291 (4%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IK 416
           D            +  LI E    +D       + R  +     A+L  H +  ++  I+
Sbjct: 77  DDAESQIHTMSEQYRHLIEEKQAEIDTYKTVAEQMRQEHASTALADLAQHSQYKVDEDIR 136

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           + + R    +     +    Q+ + +            + R Q+  +    QS  V  + 
Sbjct: 137 EWRTRVEDLEEQLRLVGDQHQEDMVQLQQQHASQLAQMKSRLQEFETNSAKQSPSVSNRD 196

Query: 477 SKK----PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
             +        +   L   +       ++  +   +        KL   +     E    
Sbjct: 197 GDRATQDVHSDQVDALRLELEAERERGQRLDQ--QLTLMKGANHKLREQIAEVEDELATA 254

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLL 591
           L          +       +L   V    +    ++  I  +    +Q    ++   R L
Sbjct: 255 LEAGAANT-KTKDSDHAHAELQATVDALHMELQASQQKISQLSATLKQDTLRHQSTEREL 313

Query: 592 SRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             + +E+E             +A+ T  L + L +   Q+ +++ Q A++E
Sbjct: 314 RARLQELELNGSDSQTQAGSTDADVTQQLQTRLADAEQQLAEMDEQLAVVE 364


>gi|168029891|ref|XP_001767458.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681354|gb|EDQ67782.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 2578

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 70/231 (30%), Gaps = 26/231 (11%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             + Q    ++  L ++            K N     +    Q   ++ +   +  K  +
Sbjct: 607 EAFRQETSQKVNDLQEEKAKLMQDVAELEKLNEETEQEISMKQSAWEAQVGVLESEKSEA 666

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           + ++  L   +      +E    +      N  +Q+L   +     E           +L
Sbjct: 667 VSKSEDLEQRLQ--VFREEIKNLMEKEEKSNQLIQELRKEILRLRSE---------IDKL 715

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK-----E 596
            E    +  ++L+        W       + D        L   K  R   R       +
Sbjct: 716 EEVKERQEGERLELAAELQAAWDQI--QAVRDSEATLTTELRDLKDQRNEERLITDGLVQ 773

Query: 597 EIEKQIAQVTAKGEAE--KTAILISILHEVHIQIH------QIESQEAMIE 639
           E+ +Q+ ++  K      K   L   L E+  +        ++ ++ AM+E
Sbjct: 774 ELRRQLLELEEKKSEAATKVEELSKQLKELRKEQELQDENERLTAEIAMLE 824


>gi|119387174|ref|YP_918229.1| replicative DNA helicase [Paracoccus denitrificans PD1222]
 gi|119377769|gb|ABL72533.1| replicative DNA helicase [Paracoccus denitrificans PD1222]
          Length = 499

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 45/150 (30%), Gaps = 14/150 (9%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  LL  L+ +  +     + +    + +   ++++              P  I   + 
Sbjct: 30  AEQQLLGALLTNNEVYDHVSRIIQARHFYDPVHRRIYEICAERIARNALASPVTIKAFME 89

Query: 543 -ERGFGEL-----LKQLDRQVRDAGLWSATTEANIVDVRQGYQ----QALALYKRFRLL- 591
            + G  EL     L +L      +       +       +       Q +A       + 
Sbjct: 90  HDAGLKELGGPAYLARLAGAAISSHAARDYAQMIREFALRRELIGLGQDIAARASTVSVS 149

Query: 592 ---SRQKEEIEKQIAQVTAKGEAEKTAILI 618
                Q +E E+ + ++  +G AE+     
Sbjct: 150 DSAEEQIKEAEQVLYKLGEQGVAERGFQSF 179


>gi|150008751|ref|YP_001303494.1| DNA primase [Parabacteroides distasonis ATCC 8503]
 gi|149937175|gb|ABR43872.1| DNA primase [Parabacteroides distasonis ATCC 8503]
          Length = 323

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I+D+   I +++ +    Y    ++  N      W   P  +E   SF  N     +Y 
Sbjct: 2  TIQDVKQ-IKLADYLQSLGYTPVKQQGKNL-----WYKSPLREETDASFKVNTELEKWYD 55

Query: 65 FSCHVKGDH 73
          F     G+ 
Sbjct: 56 FGIGKGGNI 64


>gi|295133074|ref|YP_003583750.1| chaperone ClpB [Zunongwangia profunda SM-A87]
 gi|294981089|gb|ADF51554.1| chaperone ClpB [Zunongwangia profunda SM-A87]
          Length = 868

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 69/200 (34%), Gaps = 3/200 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++K          +  +++    K +   K  +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQKVMVEEPDTESAISILRGIKDKYEQHHKVRIKDEAIIAAVELSQ 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             +  ++     I   +    KL   + S   E      + +   +          +   
Sbjct: 377 RYITNRFLPDKAIDLMDEAASKLRMEINSKPEELDVLDRKIMQLEIEIEAIKREKDEAKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           +   A L +   E N  ++   ++    +    +    + EE + +  +   +G+  K A
Sbjct: 437 KSLRADLANLKEERN--EIHAQWKNEKEVVDNIQGAKAEIEEYKLEAERAEREGDYGKVA 494

Query: 616 IL-ISILHEVHIQIHQIESQ 634
            L    + E   ++ +++ +
Sbjct: 495 ELRYGKIKEAQEKLERLQKE 514


>gi|254444598|ref|ZP_05058074.1| replicative DNA helicase [Verrucomicrobiae bacterium DG1235]
 gi|198258906|gb|EDY83214.1| replicative DNA helicase [Verrucomicrobiae bacterium DG1235]
          Length = 469

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 73/213 (34%), Gaps = 28/213 (13%)

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSL-REAALLLTLINHPA--ILQEQYQELADIR 509
           N      +   +++  S +    L+   SL  E  LL   +  PA  I +    +L    
Sbjct: 3   NKPFSGSRSSDKKISPSPISLAGLAPPHSLEAEKGLLAACLLDPAEIISRCLASKLPQEA 62

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
           + +   Q ++      F  +     + + + L   G  E +  L            T  A
Sbjct: 63  FYHPAHQVVYQTCCDLFENKSMLDAQVLAEELRSLGKLEEVGGLVYVADLTSHIETTAHA 122

Query: 570 N--IVDVRQGYQQALALYKRFRLLSR-----------QKEEIEKQIAQVTAKGEAEKT-- 614
           N  +  VR+ Y +   +    R + R             +EIEK+I  ++    A+ +  
Sbjct: 123 NYFLDKVREHYTKRRLIASASRSIERCYTADDSGIESLVDEIEKEIYAISDAQVADTSHP 182

Query: 615 -AILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
               +     +  +         M+EG G++SG
Sbjct: 183 IRESVGEAVSLIKK---------MLEGRGELSG 206


>gi|149209961|ref|XP_001522355.1| hypothetical protein MGCH7_ch7g462 [Magnaporthe oryzae 70-15]
 gi|86196417|gb|EAQ71055.1| hypothetical protein MGCH7_ch7g462 [Magnaporthe oryzae 70-15]
          Length = 2412

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/315 (12%), Positives = 94/315 (29%), Gaps = 14/315 (4%)

Query: 328  LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
                 + +++    +        V   R  D +  ++     A ++          +   
Sbjct: 1669 AAEFQRNLEMAETKIEVEIMNRSVYDQRVHDLEERLKHQEVKAEQEASARRTAEDRLAEN 1728

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            +     S        E     +  I  I++ K +         RL  L            
Sbjct: 1729 QRLLRISSEEETRLREALEEKEQKIKSIEESKGKTTM------RLALLEASQTNNQQSQA 1782

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                K      +   +++  ++   + +     + ++ + L  +      L++    L  
Sbjct: 1783 DIQNKMNATETELREARQDARTWKAEAERVNNIARQQGSDLAQVNEQNKHLKKIIDTLGT 1842

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR--LCERGFGELLKQ---LDRQVRDAGL 562
               +N  +++ W   F            +I +      +   ELL +   LD +++    
Sbjct: 1843 QLEENERIRETWRGKFVSLQNDMTDAAAKITEESAHRIKKEQELLARQEVLDAKLQAEAR 1902

Query: 563  WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILIS 619
                 E+ +  +  G +Q +      + L     E++    Q+ Q + + + E      S
Sbjct: 1903 TRERLESELERLEAGERQGIRAVNECKRLDTLLAELKTENHQLQQSSMRYQIEFQEARDS 1962

Query: 620  ILHEVHIQIHQIESQ 634
               EV      ++SQ
Sbjct: 1963 AAREVQRTRDAMQSQ 1977


>gi|152979846|ref|YP_001352995.1| replicative DNA helicase [Janthinobacterium sp. Marseille]
 gi|151279923|gb|ABR88333.1| replicative DNA helicase [Janthinobacterium sp. Marseille]
          Length = 461

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 67/198 (33%), Gaps = 19/198 (9%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                L   ++       E ++L  L+   A        +    +   + + ++  +   
Sbjct: 4   RADPQLESLRVPPHSIEAEQSVLGGLLLDNAAWDRIADFVNHDDFYRYDHRIIFQHIVKL 63

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
               +      + + L   G  E +  +     +A   +  + ANI    +  +    L 
Sbjct: 64  INNARPADVITVFEALTNSGKAEEVGGVA--YLNALAQNTPSAANIRRYAEIVRDRGVLR 121

Query: 586 K---------------RFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQI 628
           K               + + + +  +E E +I  +  +G   A+    +  +L +V  +I
Sbjct: 122 KLITVSDEISGNAFNPQGKEVKQMLDEAESKIFAIAEEGARGAQGFQEIQPLLTQVVERI 181

Query: 629 HQIESQEAMIEGFGKMSG 646
            ++ ++++  +  G  +G
Sbjct: 182 DELYNRDSTSDITGVPTG 199


>gi|73957802|ref|XP_546939.2| PREDICTED: similar to CCAAT displacement protein isoform a [Canis
           familiaris]
          Length = 1411

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 102/286 (35%), Gaps = 22/286 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 222 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 281

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q    +        ++  ++   +   +          KL +     ++  L T +   
Sbjct: 282 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS--LQTALEKT 339

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +I    +E++ + + L   +   E      E + ++L        L 
Sbjct: 340 RTELFDLKTKYDEEITAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 399

Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598
              ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++
Sbjct: 400 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 459

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           E+Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 460 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGTG 505


>gi|56416960|ref|YP_154034.1| replicative DNA helicase [Anaplasma marginale str. St. Maries]
 gi|56388192|gb|AAV86779.1| replicative DNA helicase [Anaplasma marginale str. St. Maries]
          Length = 491

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 61/187 (32%), Gaps = 15/187 (8%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S+L            E  L+  ++    I       ++   + +    +++  +      
Sbjct: 13  STLGAIGGLPSNIEAEQMLIGAMLRDNRICDALEDIISADVFFDPLHGRIFDQVLKINRR 72

Query: 529 QKYFLPEEIH------QRLCERGFGELLKQLDRQVRD----AGLWSATTEANIVDVRQGY 578
                   +       + L E G  E L ++  +         +     +A++      +
Sbjct: 73  GLAANEISLKMFFDNDEALIECGGAEYLAKIAAKASVVFDIRSVAQVVFDAHLRRCLIAF 132

Query: 579 QQAL----ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIES 633
              +      Y       +Q E+  +++  + ++G++++     S+L E V  +I   + 
Sbjct: 133 GNDVVGNAYDYDSDNPAEQQIEDAAQRLFVLGSRGKSDRNYHKFSVLVEDVRKKIEAAKG 192

Query: 634 QEAMIEG 640
               ++G
Sbjct: 193 GANALQG 199


>gi|332703043|ref|ZP_08423131.1| hypothetical protein Desaf_1907 [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553192|gb|EGJ50236.1| hypothetical protein Desaf_1907 [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 477

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 101/357 (28%), Gaps = 43/357 (12%)

Query: 41  ACCPFHDEKT--PSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
           A CPFH E+T   +F  +  +    C SC   GD L   + + G    +         GV
Sbjct: 40  AFCPFHAERTEGGAFFYDFEEDHCMCHSCGEHGDLLHIYNRIHGRD-GD------DKDGV 92

Query: 99  ----PLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAI 154
                    D +  ++E  +         A+       +      +     ER       
Sbjct: 93  REFKECYAPDAESPRREHRRE------AKASAPARRDYRPTEKGDVPDVWAERANSFIEH 146

Query: 155 EMFKLGYAPD------SRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208
              +L  +P+       RY + E +              + +         D++R     
Sbjct: 147 SRERLRESPEIFAEQLGRYGITEEVADLSRLGWNERFKQVPVTRWGLPYEDDQYRPGKER 206

Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRR 268
            IR   G VI +  R+ +     +  +  E   +      Y           SI      
Sbjct: 207 MIRLYHGLVIPYYLRSRAVKVKFRRADPGEGARYMPA---YG--------GMSIMSVYGN 255

Query: 269 NSSSFIILVEGYMDVLSLCQAGVQNVV---SSLGTALTEYQLRLLWKLSPRIVLCFDGDD 325
            +    ++VE   D +   QAG +  +   S+   +                +    G+ 
Sbjct: 256 PAWKLWLVVETERDGVLGWQAGRKFQIGFVSTCSASWRPDPRTHGILGEAEFI----GNA 311

Query: 326 PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382
                A            P      V    G+D     +  G+    + I+ +LP  
Sbjct: 312 LDTDQAGAKNRFFWQETYPQQVRTPVPAKYGKDLGDLGKAGGEHLVREFILSALPSH 368


>gi|302849310|ref|XP_002956185.1| hypothetical protein VOLCADRAFT_119310 [Volvox carteri f.
           nagariensis]
 gi|300258488|gb|EFJ42724.1| hypothetical protein VOLCADRAFT_119310 [Volvox carteri f.
           nagariensis]
          Length = 2956

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 85/278 (30%), Gaps = 17/278 (6%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              +   +   V +L       + +         + + E+E      +  +    LR   
Sbjct: 349 HGKEEEHDSQRVAALQQQVSELQAKLAEYRSYLEENQEEIERMQVTELQALA---LRAQ- 404

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            Q   +R  ++ +++        +  ++       +  SQ     +  + ++++  S   
Sbjct: 405 -QQAAEREAEVVRQHEATLDTLRQQLEQRKDAELAELASQHAAAMAEAQSRVAELISQHS 463

Query: 485 AALLLTLINHPAILQEQYQELADIR-----YDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             L         +  +  + L ++            Q L        V +      E+ Q
Sbjct: 464 RQLADLEAQSARMASQHVETLGELHAQLAKLTGQHAQALAER--EAAVTKLQQREAELQQ 521

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              +    E L+  +     A   +A       +  + +   +A       L   + +IE
Sbjct: 522 HHTDALAKEKLRLAEALTAQAVELAARHAEERREAEERWGVEVAAK-----LQELQAQIE 576

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           ++  +     +AE        L E   Q+ ++ +++A 
Sbjct: 577 QRFREQQTTRDAEARRKHAERLAEQVAQLARLHAEQAA 614


>gi|186683111|ref|YP_001866307.1| replicative DNA helicase [Nostoc punctiforme PCC 73102]
 gi|186465563|gb|ACC81364.1| replicative DNA helicase [Nostoc punctiforme PCC 73102]
          Length = 876

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 10/139 (7%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L  +    E A+L  ++  P  +      L    +  +  + ++        + K    
Sbjct: 14  RLPPQNIEAEEAILGGILLDPEAISRVSDRLLPEAFYISAHKDIYQAAVRLHTQGKPTDL 73

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L +    E+L ++  + + A L   T  A  +D   G           + L RQ
Sbjct: 74  LSVTSWLTDH---EMLTRIGGRNKLATLVDRTVSAVNIDALAGLVME-------KYLRRQ 123

Query: 595 KEEIEKQIAQVTAKGEAEK 613
             +   +I  +  + E E 
Sbjct: 124 LIKAGNEIVHLGYETETEL 142


>gi|327458637|gb|EGF04985.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis SK1057]
          Length = 641

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 541

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++   Q        A    +    ++  ++   L +R   L  Q E+++ QI+
Sbjct: 542 KAEQEALREETEQASPDKPVPAN---DYQLQKENQKEQRRLARRLEQLEAQIEDLDSQIS 598

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI--ESQEAMIE 639
           ++       +     + L E   QI Q+  + +EAM+E
Sbjct: 599 RLQEAM---QATNDAAELMESQQQIDQLTADQEEAMLE 633


>gi|319744468|gb|EFV96825.1| hypothetical protein HMPREF9171_1673 [Streptococcus agalactiae
          ATCC 13813]
          Length = 362

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 22/91 (24%)

Query: 8  IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
          I+ +     I ++              +   +          P HD    SF        
Sbjct: 4  IEKVKQKA-ILDVAES-----------LGYSFKRLSGQVYEHPEHD----SFRIFADTNT 47

Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          +  FS  ++GD + F+  ++G SF E++  L
Sbjct: 48 FKWFSRDIQGDVIDFVQLVIGVSFKEALCYL 78


>gi|195046790|ref|XP_001992219.1| GH24633 [Drosophila grimshawi]
 gi|193893060|gb|EDV91926.1| GH24633 [Drosophila grimshawi]
          Length = 987

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 66/260 (25%), Gaps = 13/260 (5%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
             +       +     +++     +        L+  +  + D + +   +Q   +RL +
Sbjct: 247 DWDKQSSSSEISVACLQDKIIQMEETHYSTNEELQATLQELADLQTQLSDTQTENERLSE 306

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
                            ++                           + RE  LL      
Sbjct: 307 EKDVLFQSLCRQTEKLNESRTQISTLQELLLRDTKQPAAAAAEVITTEREKKLL------ 360

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             ++Q   +E         EL      L      +     E+  QR           QLD
Sbjct: 361 -DLIQTSQEEREVFMLKQEELNA---ELAELRQSRDAVQLEQQRQRERNALLD---SQLD 413

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
               +     A       ++ Q   +   L         + EE+E  +A+      ++  
Sbjct: 414 AANAERKQIDAQLAVAKEEISQRAIEISRLSTLLENARSKIEELEADLARGDKTDLSDVL 473

Query: 615 AILISILHEVHIQIHQIESQ 634
                    +  ++ +++ Q
Sbjct: 474 DASRREKDALEERLAELQDQ 493


>gi|15193244|gb|AAK91740.1|AF400249_1 axoneme-associated protein GASP-180 [Giardia intestinalis]
          Length = 1627

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 111/307 (36%), Gaps = 30/307 (9%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-RYYYSQAI 428
           AFE  +     ++D    R  E        + A     L+  +  ++   L +    +A+
Sbjct: 401 AFEDELAGLRSMLDERDARIAELEQAAASQDEAYATQILEEEVESLRQALLAKDGELEAL 460

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL- 487
           + RL++   +             KN+     +    R   +     +  K+ +  EA + 
Sbjct: 461 QSRLEETLARGGEAADFDAIIAAKNSEIARLQDLVMRAESAQRSSAEGDKRVAQLEAQIA 520

Query: 488 -LLTLINH-----PAILQEQYQELADIRYD-----------NNELQKLWSFLFS------ 524
            L  L+          ++E  +++AD++++           ++E++ L   +        
Sbjct: 521 GLERLLADAQGGDDERVKELNEQIADLQFELANAKQDIDERDDEIELLRDRIQEEMKNSA 580

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
              E+   L  +  +      +   +++L +QV++    S    A+   +R   ++  AL
Sbjct: 581 ALQERVDALEADATRGADAAEYLARIEELQQQVKELSGRSRDAPADETAIRALEEKIRAL 640

Query: 585 YKRFRLLSRQKEEIEKQIAQVTA---KGEAEKTAILISILHEVHIQIHQI-ESQEAMIE- 639
                    Q  E+++ +    A   + +  +   L      +  ++  + ++ EA+ + 
Sbjct: 641 TDEIEARDNQIAELKELVDGAPAQPVEADPAQLTALEEENGRLKDELQALNDALEALRKS 700

Query: 640 GFGKMSG 646
           G  + SG
Sbjct: 701 GADEASG 707



 Score = 44.1 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 29/288 (10%), Positives = 88/288 (30%), Gaps = 13/288 (4%)

Query: 358  DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
            DP+   +      F+  +V+ +  +  L    T        +  A +   +      +++
Sbjct: 961  DPEEQAKVSSILDFDDGLVQKVDELQALVNALTGENDHYKGEH-ARIMAEMDALKEDLRN 1019

Query: 418  QKLRYYYSQAIRDRL-------QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
             KLR    +  ++RL         L +    +        +  A  ++      R+ + +
Sbjct: 1020 GKLRSDSLEGDKERLMKQVRDLTDLVESLRKDLGAPQDQGEVAALRQEVADLRSRVDELT 1079

Query: 471  LVKGKLSKKPSLREAA--LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                   +     E    ++   + +   L E   E+   +    E +++   L +    
Sbjct: 1080 DAARGKDETIEQLEKELAIVRASVENTERLSELLAEVEGYKTKLGESKEMVDSLLAQLAS 1139

Query: 529  QKYFLPEE---IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +   L      +     + G      ++     +         A + ++   ++  +   
Sbjct: 1140 KDAELAGATTGLRAVTDDDGAELAKARVASLENEVAELRGQLSAKLAEIDAVHKNLVDSD 1199

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                 L  +   +  Q+       + E+  +L   L +   ++ ++ +
Sbjct: 1200 AEAARLREELGGLRVQLETAQVPEDTERVRMLEDQLQDARKELAELRA 1247



 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/251 (8%), Positives = 69/251 (27%), Gaps = 37/251 (14%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--SSLVKGKLSKKPSLRE 484
             + ++L+                  K     D +     L +    L K     K  + E
Sbjct: 1269 ELANKLEASEATVRELRESAEALQDKLHALSDSRAADGDLQKLVEQLEKDLSGAKELVAE 1328

Query: 485  AAL----LLTLINHPAILQEQYQELADIRYD-----------NNELQKLWSFLFS----- 524
                   L   +       +  + +A++  +           + E+ +L   L +     
Sbjct: 1329 RDATIDELKQRLRDTEEYDDLKERIAELDDEIAVLNDGLKDKDAEIAELREQLEAQPTAT 1388

Query: 525  --DFVEQKYFLPEEIHQRLCERGF---------GELLKQLDRQVRDAGLWSATTEANIVD 573
                   +        + + +              L+ +L  ++       +  +  ++ 
Sbjct: 1389 TVYPESGEEVGDAAALREVQDENAALKDELEAKRSLIDELQDEIDGLKQQCSDLKDEMIK 1448

Query: 574  VRQGYQQALALYKRFRLLSR-QKEEIEKQ---IAQVTAKGEAEKTAILISILHEVHIQIH 629
            +       +   +     SR Q  +++++   +       +      L   L ++  ++ 
Sbjct: 1449 LDSANNDKITALQCSLDESRKQIADLQEEVEVLKNTANDIDPAVVESLQEELRKLQEELD 1508

Query: 630  QIESQEAMIEG 640
              E+    ++G
Sbjct: 1509 DRENTITELQG 1519



 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 1/129 (0%)

Query: 511  DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            D   ++ L   L     E          + +   G    L   D ++ +    S  T   
Sbjct: 1224 DTERVRMLEDQLQDARKELAELRAALEAKEMETEGLRAELATADPELANKLEASEATVRE 1283

Query: 571  IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            + +  +  Q  L      R      +++ +Q+ +    G  E  A   + + E+  ++  
Sbjct: 1284 LRESAEALQDKLHALSDSRAADGDLQKLVEQL-EKDLSGAKELVAERDATIDELKQRLRD 1342

Query: 631  IESQEAMIE 639
             E  + + E
Sbjct: 1343 TEEYDDLKE 1351



 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 67/206 (32%), Gaps = 27/206 (13%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
              RL++       +                +        + + ++  L  K    E    
Sbjct: 1202 AARLREELGGLRVQLETAQVPEDTERVRMLEDQLQDARKELAELRAALEAKEMETEGLRA 1261

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                  P +  +    L        EL++    L                 R  +    +
Sbjct: 1262 ELATADPELANK----LEASEATVRELRESAEALQDKLHALSD-------SRAADGDLQK 1310

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L++QL++ +  A    A  +A I +++Q  +            + + ++++++IA++   
Sbjct: 1311 LVEQLEKDLSGAKELVAERDATIDELKQRLRD-----------TEEYDDLKERIAELD-- 1357

Query: 609  GEAEKTAILISILHEVHIQIHQIESQ 634
               ++ A+L   L +   +I ++  Q
Sbjct: 1358 ---DEIAVLNDGLKDKDAEIAELREQ 1380


>gi|152968276|ref|YP_001364060.1| replicative DNA helicase [Kineococcus radiotolerans SRS30216]
 gi|151362793|gb|ABS05796.1| replicative DNA helicase [Kineococcus radiotolerans SRS30216]
          Length = 903

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 43/136 (31%), Gaps = 10/136 (7%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++  +    E  +L  ++     + +  + L    +     + ++  +   +   +   P
Sbjct: 40  RMPPQDIAAEQGVLGGMMLSKDAIADVVEVLKGNDFYRPAHELVYEAILDLYSRGEPADP 99

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L  +G      +L R      L    +          Y + +    R R + R+
Sbjct: 100 VTVSAELTNKG------ELTRIGGTPYLHDLISTVPTAANAAFYARIV----RERAVLRR 149

Query: 595 KEEIEKQIAQVTAKGE 610
             E   +I Q+    +
Sbjct: 150 LVEAGTRIVQMGYGAD 165


>gi|320164484|gb|EFW41383.1| Ser-Thr protein kinase PK428 [Capsaspora owczarzaki ATCC 30864]
          Length = 1729

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/290 (9%), Positives = 78/290 (26%), Gaps = 30/290 (10%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                 K   +                  +T +     +          + Q  R    +
Sbjct: 661 EAEDARKKAEQLALHRQEALAAAEAQALTSTSELDKAKQRQTSADEELARLQTERDDLRK 720

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + +  Q L  +             +  +   +    ++  +      +     S  +A 
Sbjct: 721 KLAESTQSLTDQLAAAQQEARDVQAELEQVEQELDAERKKEKQKDRARRGLSTISSADAL 780

Query: 487 LLLTLINHPAI---LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRL 541
           +         +     E    +  +  +   ++KL + L    +E +      E + Q+L
Sbjct: 781 VAQLSACRTQLQDARDEHDLTIQQLEAEQQTVRKLRAELEELRLENQRLVSQTELLQQQL 840

Query: 542 CE-----------------------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
            +                       +   +  ++L R   +    +   EA     ++  
Sbjct: 841 TDTKSSRETATSQITESETRLRALEKQASDAQEELSRVSAERDRLAERAEAQSQAAKESR 900

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
               +   +   L  +  + E++  +  ++ EAE+       L ++  Q+
Sbjct: 901 NSQRSAQDQASALRVELSQAEEERKRALSELEAER--KAHKELRDLKAQL 948



 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 33/292 (11%), Positives = 85/292 (29%), Gaps = 12/292 (4%)

Query: 346  NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
                   L    D         +   + +      L ++  + +          ++    
Sbjct: 784  LSACRTQLQDARDEHDLTIQQLEAEQQTVRKLRAELEELRLENQRLVSQTELLQQQLTDT 843

Query: 406  IHLKNC-INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
               +    + I + + R    +      Q+   +   E        +  ++   +   SQ
Sbjct: 844  KSSRETATSQITESETRLRALEKQASDAQEELSRVSAERDRLAERAEAQSQAAKESRNSQ 903

Query: 465  RLMQS--SLVKGKLSKKPSLREAALLLTLIN---HPAILQEQYQELADIRYDNNELQKLW 519
            R  Q   S ++ +LS+    R+ AL         H  +   + Q   ++   + + +K  
Sbjct: 904  RSAQDQASALRVELSQAEEERKRALSELEAERKAHKELRDLKAQLSLEVERVSTDARKAQ 963

Query: 520  SFL-FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
            S L        +   P ++  ++            ++    + L       +  D     
Sbjct: 964  SKLDAEIARAARSPNPADLVSKIDSLTREIATAAKEQTKAQSDLEHLKARLS-EDKEAFE 1022

Query: 579  QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            ++   L ++     RQ  + E +      +   E    L   + E+  Q+ +
Sbjct: 1023 REKADLTQQLVAKQRQVNQTEAR----QDRQNKEDMRRLQQQITEMKSQLEK 1070


>gi|88707050|ref|ZP_01104746.1| Chaperone clpB [Congregibacter litoralis KT71]
 gi|88698700|gb|EAQ95823.1| Chaperone clpB [Congregibacter litoralis KT71]
          Length = 862

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 2/131 (1%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    ++   + S            I  ++      +   +   +         T
Sbjct: 388 AIDLIDEAASRIRMEIDSKPEALDRLERRLIQLKIEREAVRKDEDESATKQLALLDEQIT 447

Query: 567 T-EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHEV 624
             E    D+ + ++   A  +    +    E+++  +      G+  + + L    L E+
Sbjct: 448 AIEKEFADLEEIWKAEKASLQGAASVKSDIEQLKLDLETARRAGDLTRMSELQYGKLPEL 507

Query: 625 HIQIHQIESQE 635
             Q+ Q ++ E
Sbjct: 508 EKQLAQAQAAE 518


>gi|55378409|ref|YP_136259.1| chromosome segregation protein [Haloarcula marismortui ATCC 43049]
 gi|55231134|gb|AAV46553.1| chromosome segregation protein [Haloarcula marismortui ATCC 43049]
          Length = 1195

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 74/240 (30%), Gaps = 29/240 (12%)

Query: 425 SQAIRDRLQQLFQKYIT--------EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + +  R+ +L  +           E        +++      +     + +        
Sbjct: 695 LERVATRINELEDERADVRDDLRDVEERLDDARDRESDATEQVRDIETSIERKQTALEDT 754

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            ++    EA L         +  +  +  ADI     E+  L   +     E +     +
Sbjct: 755 RERIEQLEADLEEIADEREDVADQMDELEADIEAKTEEIDALQRDIDELEAEVEDSELPD 814

Query: 537 IHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
           +  +            +   +LD ++ +  L     E  I D+    + A     R    
Sbjct: 815 LTDQRESIKDDIDALEDRQGELDAELNEHQLEKQYAEEAIEDLHDDIEAAQN---RKADH 871

Query: 592 SRQKEEIEKQIAQV-TAKGEAEKTAI-LISILHEVHIQIHQIES-----------QEAMI 638
             + +++E  +A+    KGE E+    L   L E+  +   +++           Q+A +
Sbjct: 872 EERIDDLEATVAEKQELKGEKEQAVADLEEELAELKSEREDLKADLQEAKEARDEQQAAV 931



 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 53/158 (33%), Gaps = 19/158 (12%)

Query: 498 LQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
           + E   E+ D    +  ++ + +   + +    Q     E    +L ++   E ++ L  
Sbjct: 800 IDELEAEVEDSELPDLTDQRESIKDDIDALEDRQGELDAELNEHQLEKQYAEEAIEDLHD 859

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALY-----------KRFRLLSRQKEEIEKQIAQ 604
            +  A    A  E  I D+     +   L            +    L  ++E+++  + +
Sbjct: 860 DIEAAQNRKADHEERIDDLEATVAEKQELKGEKEQAVADLEEELAELKSEREDLKADLQE 919

Query: 605 VTAKGEAE-----KTAILISILHEVHIQIH-QIESQEA 636
                + +     +    +    E   ++  +I+  EA
Sbjct: 920 AKEARDEQQAAVSEIERDLESEQETQERLEWEIDELEA 957



 Score = 37.2 bits (84), Expect = 9.0,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 11/148 (7%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQK------YFLPEEIHQRLCERGFGELL- 550
           L+++ +EL  +    +EL+   + L ++  E++           E++Q +  +G  E L 
Sbjct: 255 LEDKREELTAVEESIDELESELTELQAELDERQGAVIRLEDELHELNQEIERKGEDEQLA 314

Query: 551 --KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT-- 606
             ++++    D        E+    V     +    + +        +++E  I +    
Sbjct: 315 IKREIEEIKGDISRLEDKIESAEETVEAAENERRQAFVQIDRKQETIDDLESDIRETKVA 374

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
                   A   S L EV  +I ++  +
Sbjct: 375 KSNVKADIAEKESELAEVQQRIDEVGEE 402


>gi|145610094|ref|XP_366640.2| hypothetical protein MGG_02716 [Magnaporthe oryzae 70-15]
 gi|145017477|gb|EDK01840.1| hypothetical protein MGG_02716 [Magnaporthe oryzae 70-15]
          Length = 2396

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/315 (12%), Positives = 94/315 (29%), Gaps = 14/315 (4%)

Query: 328  LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
                 + +++    +        V   R  D +  ++     A ++          +   
Sbjct: 1653 AAEFQRNLEMAETKIEVEIMNRSVYDQRVHDLEERLKHQEVKAEQEASARRTAEDRLAEN 1712

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            +     S        E     +  I  I++ K +         RL  L            
Sbjct: 1713 QRLLRISSEEETRLREALEEKEQKIKSIEESKGKTTM------RLALLEASQTNNQQSQA 1766

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                K      +   +++  ++   + +     + ++ + L  +      L++    L  
Sbjct: 1767 DIQNKMNATETELREARQDARTWKAEAERVNNIARQQGSDLAQVNEQNKHLKKIIDTLGT 1826

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR--LCERGFGELLKQ---LDRQVRDAGL 562
               +N  +++ W   F            +I +      +   ELL +   LD +++    
Sbjct: 1827 QLEENERIRETWRGKFVSLQNDMTDAAAKITEESAHRIKKEQELLARQEVLDAKLQAEAR 1886

Query: 563  WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILIS 619
                 E+ +  +  G +Q +      + L     E++    Q+ Q + + + E      S
Sbjct: 1887 TRERLESELERLEAGERQGIRAVNECKRLDTLLAELKTENHQLQQSSMRYQIEFQEARDS 1946

Query: 620  ILHEVHIQIHQIESQ 634
               EV      ++SQ
Sbjct: 1947 AAREVQRTRDAMQSQ 1961


>gi|257783837|ref|YP_003179054.1| replicative DNA helicase [Atopobium parvulum DSM 20469]
 gi|257472344|gb|ACV50463.1| replicative DNA helicase [Atopobium parvulum DSM 20469]
          Length = 479

 Score = 47.6 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 52/178 (29%), Gaps = 19/178 (10%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
              Q + ++     + S  E ++L  +I    I  E    L+   +     Q ++  + S
Sbjct: 9   NPTQLTALENASMPQDSDAEFSILSAMILSEEIRGECLIRLSSEDFYIPSNQIIFEAIKS 68

Query: 525 DFVEQKYFLPEEIHQRLCERGFGE----LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            F   K      +   L   G  E     ++  +       +      A ++      ++
Sbjct: 69  LFDNNKPVDVISLADHLKSNGKFERAGGAVRLAELGNNPLAMVGWENHAVMLHRDTTLRK 128

Query: 581 ALALYKRFRLL---------------SRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
            ++   +   L                +   ++  +  Q + +   +    L   L +
Sbjct: 129 MISASAKISALAYNAPEDTKQVVDQAEKLIFDVTNRDVQQSEQNIEDIMTNLFDELQQ 186


>gi|111305480|gb|AAI21232.1| dctn1 protein [Xenopus (Silurana) tropicalis]
          Length = 925

 Score = 47.6 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 118/361 (32%), Gaps = 36/361 (9%)

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFD---GDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            V+ L       +   L      +    +         +A  K ++     L        
Sbjct: 168 PVAPLPGPGPTKEEENLRAQVKDLDEKLETLKMKRAEDKAKLKELEKSKLQLEQLQEWKS 227

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +  +  D    ++   K A E L  +   + +M    +    +    +   E    L+ 
Sbjct: 228 KMQEQQADVQRQLKEAKKEAKEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQ 287

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +KD+           + L+   + +  E    G     ++    Q       ++ +
Sbjct: 288 EVDTLKDKV----------EELKIDLEIFKHEIEEKGSDGAASSYQVKQLEEQNARLKEA 337

Query: 471 LVKGKLSKKPSLREAALLLTLIN----HPAILQEQYQEL-ADIRYDNNELQKLWSFLFSD 525
           LV+ +       +E   +   +         L++Q ++L  +       + +L   + + 
Sbjct: 338 LVRMRDLSASEKQEHVKVQKQMEKKNTELDTLRQQKEKLQEEASLMEKTIDELKEQVDAA 397

Query: 526 FVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                    EE+ + L ER     E +++L   V D    +   +    + R+     L 
Sbjct: 398 LGA------EEMVETLTERNLDLEEKVRELRETVSDLEAINEMNDELQENARET---ELE 448

Query: 584 LYKRFRLLSRQKEEIEKQIAQV-TAKGEAE----KTAILISILHEVHIQIHQIESQEAMI 638
           L ++  +   +  E EK++        + +    K   L + L EV+ ++     QEA +
Sbjct: 449 LREQLDMAGARVREAEKRVEAAQETVADYQQTIKKYRDLTAHLQEVNRELR--NQQEASV 506

Query: 639 E 639
           E
Sbjct: 507 E 507


>gi|3986196|dbj|BAA34955.1| myosin heavy chain [Dugesia japonica]
          Length = 1743

 Score = 47.6 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 92/250 (36%), Gaps = 8/250 (3%)

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
           ++A++E  +K   + + +++      +  + +L    ++   +        +K  + +  
Sbjct: 702 QKADMEGRIKELEDQLSEEENSATTLEEAKKKLNGEIEELKKDVESLESSLQKAEQEKAA 761

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH-PAILQEQYQELADIRYDNNELQKL 518
           K    + +  ++ + +       +E      L       L+ + ++++++     +L++ 
Sbjct: 762 KDQQIKTLNDNVREKEEQITKMQKEKKAADELQKKTEESLRAEEEKVSNLNKAKAKLEQA 821

Query: 519 WSFLFSDFVEQKYF--LPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDV 574
              +  +   ++      E+  +++        E+L  L+R   +        E  +   
Sbjct: 822 VDEMEENLSREQKVRADVEKAKRKVEGELKQNQEMLNDLERVKSELEEQLKRKEMELNGA 881

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               +    L      L R+ +E++ +I ++    EAE+ A   +   +  ++    E  
Sbjct: 882 NSKIEDENNL---VATLQRKIKELQARIQELEEDLEAERQARAKAEKAKHQLEAEIEEVT 938

Query: 635 EAMIEGFGKM 644
           E + E  G  
Sbjct: 939 ERLEEQGGAT 948



 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 82/246 (33%), Gaps = 22/246 (8%)

Query: 396  NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
               + + ++   ++      +  K +    + ++ RLQ   +  + +         +  +
Sbjct: 1176 EMEEFKRKMNARIQELEEESESNKSKCSQLEKVKSRLQGEIEDLLIDVERANGLASQLEK 1235

Query: 456  HRDQKGPSQRLMQSSLVKGKLSKKPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNE 514
             +          Q    + +   + SLRE   +   +    ++L+    ++  ++ +N  
Sbjct: 1236 KQKGVDKLIGEWQKKYSESQQELEVSLRESRTVSAEVFKLKSVLENSQDQIESLKRENKN 1295

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
            L      L     E                     + ++++  +   +     +  + + 
Sbjct: 1296 LSDEIHDLTEQLGEGGRN-----------------VHEIEKARKRIEIERDELQHALEEA 1338

Query: 575  RQGYQQALALYKRFRL-LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ--I 631
                +Q  A  +R +L +S+ ++E E++IA+   + E  +       L  +   +     
Sbjct: 1339 ESALEQEEAKSQRAQLEISQARQEAERRIAEKEEEFEVTRKNH-QRSLESMQASLEAEVR 1397

Query: 632  ESQEAM 637
               EAM
Sbjct: 1398 GRTEAM 1403


>gi|284799760|ref|ZP_05984780.2| replicative DNA helicase [Neisseria subflava NJ9703]
 gi|284797058|gb|EFC52405.1| replicative DNA helicase [Neisseria subflava NJ9703]
          Length = 471

 Score = 47.6 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 56/177 (31%), Gaps = 12/177 (6%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 +    L    +  E ++L  L+   +        ++   +  +E + ++  + +
Sbjct: 11  PSEDREISALSLPPHSTEAEQSVLGGLMLENSAWDRIADVVSGEDFYRHEHRLIFRAIAN 70

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
              E +      + + L         ++L+       L +           + Y + +  
Sbjct: 71  LINESRPADVITVQESLERN------EELEAAGGFNYLITLAQNTPSAANIRRYAEIV-- 122

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
             R R + RQ  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 123 --RERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 175


>gi|194218881|ref|XP_001916140.1| PREDICTED: cut-like homeobox 1 [Equus caballus]
          Length = 1327

 Score = 47.6 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 101/286 (35%), Gaps = 22/286 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +++  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 178 DPVPALELGQQLQVKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 237

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q    +        ++  ++   +   +          KL +     +   L T +   
Sbjct: 238 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQT--LQTALEKT 295

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +I    +E++ + + L   +   E      E + ++L        L 
Sbjct: 296 RTELFDLKTKYDEEITAKADEMEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 355

Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598
              ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++
Sbjct: 356 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLSKLRENSASQISQL 415

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           E+Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 416 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 461


>gi|325298296|ref|YP_004258213.1| DNA primase [Bacteroides salanitronis DSM 18170]
 gi|330995853|ref|ZP_08319749.1| hypothetical protein HMPREF9442_00821 [Paraprevotella xylaniphila
          YIT 11841]
 gi|324317849|gb|ADY35740.1| DNA primase [Bacteroides salanitronis DSM 18170]
 gi|329574384|gb|EGG55955.1| hypothetical protein HMPREF9442_00821 [Paraprevotella xylaniphila
          YIT 11841]
          Length = 323

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I+D+   I +++ +    Y    ++  N      W   P  +E   SF  N     +Y 
Sbjct: 2  TIQDVKQ-IKLADYLQSLGYTPVKQQGRNL-----WYKSPLREETDASFKVNTELEKWYD 55

Query: 65 FSCHVKGDH 73
          F     G+ 
Sbjct: 56 FGIGKGGNI 64


>gi|332265086|ref|XP_003281557.1| PREDICTED: myosin-11 [Nomascus leucogenys]
          Length = 1358

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 90/271 (33%), Gaps = 22/271 (8%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     +     E E        ++ ELE  L      +++++ R    QA R ++ Q  
Sbjct: 873  QEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQM 932

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                 +        +K    +       + ++  ++          +E  LL        
Sbjct: 933  LDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKLSKERKLLE------E 986

Query: 497  ILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKYFLPEEIHQRLCER--G 545
             + +    LA+       L KL      + S+        E+     E++ ++L      
Sbjct: 987  RISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLEGEASD 1046

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
            F E +  L  Q+ +  +  A  E  +          +A   +     ++  E+E  I+ +
Sbjct: 1047 FHEQIADLQAQIAELKMQLAKKEEELQAALARLDDEIA---QKNNALKKIRELEGHISDL 1103

Query: 606  TAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                ++E+ A   +     ++  ++  ++++
Sbjct: 1104 QEDLDSERAARNKAEKQKRDLGEELEALKTE 1134



 Score = 37.2 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 77/249 (30%), Gaps = 12/249 (4%)

Query: 387  KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
             +  E+    T + + + E  LK                Q   ++LQ   + Y       
Sbjct: 834  MQAKEDELQKTKERQQKAENELKELEQKHSQLTEEKNLLQ---EQLQAETELYAEAEEMR 890

Query: 447  GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
             R   K     +     +  ++    +G+  +    + A  +L L       +   Q+L 
Sbjct: 891  VRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQ 950

Query: 507  DIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
              +      ++KL   +     +      E              L + + + ++      
Sbjct: 951  LEKVTAEAKIKKLEDEILVMDDQNNKLSKERKLLEERISDLTTNLAEEEEKAKNLTKLKN 1010

Query: 566  TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
              E+ I ++    ++     +    L R+         +  A    E+ A L + + E+ 
Sbjct: 1011 KHESMISELEVRLKKEEKSRQELEKLKRKL--------EGEASDFHEQIADLQAQIAELK 1062

Query: 626  IQIHQIESQ 634
            +Q+ + E +
Sbjct: 1063 MQLAKKEEE 1071


>gi|308159909|gb|EFO62425.1| Hypothetical protein GLP15_358 [Giardia lamblia P15]
          Length = 1522

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 80/203 (39%), Gaps = 16/203 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR---EAALLLTLI 492
           F +      G  R   ++A  +  +  ++     S ++   ++  +LR   E  +     
Sbjct: 237 FNEEKKRIDGKHRAELQSAETQTARLATEIDALKSRLEQAEAEADALRTRCEEDVDKQKA 296

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
            +   ++    ++A +     E  +  S +F   +  +     ++   L +         
Sbjct: 297 YYDDQIEYLNSQVASLT----EAARSASGMFEGEIAARDRDITKLSAELRD--------S 344

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           L+R+    GL +     +  ++ Q  +Q +  L  +   L+ + +E E+ +A++ AK   
Sbjct: 345 LEREDYLKGLMNQLKREHKDELDQLRKQNVKDLDAQKADLTEKIKEAERTLAEMLAKNTD 404

Query: 612 EKTAILISILHEVHIQIHQIESQ 634
            + A LI+ L E   +  ++E Q
Sbjct: 405 GQIADLIAKLQEQEQRNERLEKQ 427


>gi|170587802|ref|XP_001898663.1| hypothetical protein Bm1_36080 [Brugia malayi]
 gi|158593933|gb|EDP32527.1| hypothetical protein Bm1_36080 [Brugia malayi]
          Length = 790

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 79/255 (30%), Gaps = 19/255 (7%)

Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPS 463
                      K    +        ++ Q     ++ +                 +  PS
Sbjct: 238 WHRTSEKKAQRKSHTAQKILPAIFNEKTQDGIYAHVKKVGNNVEKINTVLLETSLENQPS 297

Query: 464 QRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAILQEQ-------YQELADIRYDNN 513
             +     ++   + + S+ E  L   L  LI H  + +E         +E+ D   +  
Sbjct: 298 GHIPGRKKMQQNEAVESSVTERNLAKQLRDLIVHVDLAKEYRHHEYKRLEEIFDQALEEK 357

Query: 514 EL-----QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
           E       +L  ++     +++        ++  E+     +++L R+           +
Sbjct: 358 EYFRQQVNELKKYIAQLEEDKQARQENLAVRKETEKICNADIERLRRENVVLNRKQKQND 417

Query: 569 ANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHEVH 625
            +   +    ++ +  L    R   RQ+ E++ QI +     K + E    L      + 
Sbjct: 418 GSDSALVNTLKEQISDLRIMVRDFDRQRSELKMQIRKSNTALKEKNEIIEQLKGEKTRLE 477

Query: 626 IQIHQIESQEAMIEG 640
            +I  I   +A + G
Sbjct: 478 KRIAIITKNKAALRG 492


>gi|320160812|ref|YP_004174036.1| chaperone ClpB [Anaerolinea thermophila UNI-1]
 gi|319994665|dbj|BAJ63436.1| chaperone ClpB [Anaerolinea thermophila UNI-1]
          Length = 861

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/142 (10%), Positives = 46/142 (32%), Gaps = 9/142 (6%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-GELLKQLDRQVRDAGLWSA 565
            I   +    +L + + S          + +   +  +    E  K    ++       A
Sbjct: 388 AIDLIDEAAARLRTEIDSKPQAIDEVDRQILQLEIERQALQKERDKASQERLSKLEQELA 447

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA--------IL 617
             +     +   ++         R +  Q ++  + I +   +   E+ A         L
Sbjct: 448 NLKEKSASLHARWKLEKEAIANLRQVKEQIDQTYRDIERAERENNLEEAARLRYGVLHEL 507

Query: 618 ISILHEVHIQIHQIESQEAMIE 639
            + + E   ++ +I+ + A+++
Sbjct: 508 QNKVKEAEKRLAEIQQEGALLK 529



 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 87/275 (31%), Gaps = 40/275 (14%)

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
            +    T +      ++   LE   +  +      +      + ++ R +      IT+ 
Sbjct: 307 HMIGATTLDEYRKHIEKDPALERRFQPILVEEPSVEDTISILRGLKSRYEVHHGVRITDA 366

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           +        +    D+  P + +        +L  +   +           P  + E  +
Sbjct: 367 AVITAATLSHRYIPDRHLPDKAIDLIDEAAARLRTEIDSK-----------PQAIDEVDR 415

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR---------LCERG---FGELLK 551
           ++  +  +   LQK       + + +       + ++         L +       ++ +
Sbjct: 416 QILQLEIERQALQKERDKASQERLSKLEQELANLKEKSASLHARWKLEKEAIANLRQVKE 475

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           Q+D+  RD    +          R  Y     L  + +   ++  EI+++ A +  + +A
Sbjct: 476 QIDQTYRDIE-RAERENNLEEAARLRYGVLHELQNKVKEAEKRLAEIQQEGALLKEEVDA 534

Query: 612 EKTAIL----------------ISILHEVHIQIHQ 630
           E+ A +                +  L E+  ++HQ
Sbjct: 535 EEIAEIVSRWTGIPVSRLLEGEMKKLLEMEERLHQ 569


>gi|241758861|ref|ZP_04756974.1| replicative DNA helicase [Neisseria flavescens SK114]
 gi|241321069|gb|EER57282.1| replicative DNA helicase [Neisseria flavescens SK114]
          Length = 468

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 56/177 (31%), Gaps = 12/177 (6%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 +    L    +  E ++L  L+   +        ++   +  +E + ++  + +
Sbjct: 8   PSEDREISALSLPPHSTEAEQSVLGGLMLENSAWDRIADVVSGEDFYRHEHRLIFRAIAN 67

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
              E +      + + L         ++L+       L +           + Y + +  
Sbjct: 68  LINESRPADVITVQESLERN------EELEAAGGFNYLITLAQNTPSAANIRRYAEIV-- 119

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
             R R + RQ  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 120 --RERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 172


>gi|145480257|ref|XP_001426151.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393224|emb|CAK58753.1| unnamed protein product [Paramecium tetraurelia]
          Length = 981

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 94/269 (34%), Gaps = 20/269 (7%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
                R  E+      D  A+ +  L    N + + + +    + +  +L+   +    E
Sbjct: 477 QESIIRRLESDLQRAEDIIAQKDQELNRLANDLSNAESKIRELEFLIQQLRDQIEDQRKE 536

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE----AALLLTLINHPAIL 498
                +  +      D            + + +        E          ++    +L
Sbjct: 537 IERLQQLIQDRDHSLDMAEKDLEEADRKIHQLENENATLNEELKDYRQNYDQVLKDNELL 596

Query: 499 QEQYQELAD-IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           +++  +L     +   E+ +L   L     E++    E++  ++ +      +  L+ QV
Sbjct: 597 EKKIGDLESKTVFLAQEIDRLKLIL-----EKRNKEIEDLKAQILK--LKAEISTLETQV 649

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE-----AE 612
           +D          +  D+ +   + +   ++   L+ Q   + +Q+ Q+ +  E      +
Sbjct: 650 KDFQQKLDEKLKDYDDLNKKLIERVLEVQQ---LNSQIIILNQQLVQLQSVNEKCRNQED 706

Query: 613 KTAILISILHEVHIQIHQIESQEAMIEGF 641
           +    +  L E+  Q+++ + +  M++GF
Sbjct: 707 QIKDYLRQLDELTRQLNKAQQEINMLQGF 735


>gi|46199425|ref|YP_005092.1| endopeptidase Clp ATP-binding chain B, clpB [Thermus thermophilus
           HB27]
 gi|54035771|sp|Q72IK9|CLPB_THET2 RecName: Full=Chaperone protein ClpB
 gi|46197050|gb|AAS81465.1| endopeptidase clp ATP-binding chain B, clpB [Thermus thermophilus
           HB27]
          Length = 854

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 68/204 (33%), Gaps = 18/204 (8%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INHPA 496
           + I +     R ++           +  +++    K ++     + ++A++    ++H  
Sbjct: 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRY 371

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG--------E 548
           I + +  +   I   +    +L   L S   E      +++   +              E
Sbjct: 372 ITERRLPD-KAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQE 430

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            LK ++ ++       A   A     R+  ++      R   + R+ E  E+Q       
Sbjct: 431 RLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQ------- 483

Query: 609 GEAEKTAIL-ISILHEVHIQIHQI 631
            +  + A L    L ++  ++  +
Sbjct: 484 YDLNRAAELRYGELPKLEAEVEAL 507


>gi|121595515|ref|YP_987411.1| primary replicative DNA helicase [Acidovorax sp. JS42]
 gi|222111736|ref|YP_002554000.1| replicative DNA helicase [Acidovorax ebreus TPSY]
 gi|120607595|gb|ABM43335.1| primary replicative DNA helicase [Acidovorax sp. JS42]
 gi|221731180|gb|ACM34000.1| replicative DNA helicase [Acidovorax ebreus TPSY]
          Length = 472

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 67/182 (36%), Gaps = 15/182 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
             +   + + ++       E+++L  L+            L D  +  +E Q++++ + +
Sbjct: 15  PSLDREVAQLRVPPHSIEAESSVLGGLLLDNMAWDRVGDLLVDGDFYRHEHQQIYAAIGA 74

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE----ANIVDVRQGYQQ 580
                K      +++ L   G  E +  L      A    + +     A IV  R   ++
Sbjct: 75  LINASKPADVITVYEHLQGMGKAEEIGGLAYLNSLAQYVPSASNIRRYAEIVRERAILRK 134

Query: 581 ALAL---------YKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIH 629
            +             + R + R  +E E++I  +  +G    +    L S++ ++  ++ 
Sbjct: 135 LVTASDDIATNAFNPQGRPVERILDEAEQKIFAIGEEGSRMKQGFQSLDSLVIDLLDRVQ 194

Query: 630 QI 631
           ++
Sbjct: 195 EM 196


>gi|288575596|ref|ZP_06393826.1| replicative DNA helicase [Neisseria mucosa ATCC 25996]
 gi|288567301|gb|EFC88861.1| replicative DNA helicase [Neisseria mucosa ATCC 25996]
          Length = 556

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 55/180 (30%), Gaps = 12/180 (6%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
           P        +    L       E ++L  L+   +        +    +  +E + ++  
Sbjct: 93  PDTSSEDREVSALSLPPHSMEAEQSVLGGLLLENSAWDRIADVVTGEDFYRHEHRLIFRA 152

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           + +   E +      + + L         ++L+       L +           + Y + 
Sbjct: 153 IANLINESRPADVITVQESLERN------EELEAAGGFNYLITLAQNTPSAANIRRYAEI 206

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           +    R R + RQ  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 207 V----RERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 260


>gi|319638415|ref|ZP_07993177.1| replicative DNA helicase [Neisseria mucosa C102]
 gi|317400164|gb|EFV80823.1| replicative DNA helicase [Neisseria mucosa C102]
          Length = 471

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 56/177 (31%), Gaps = 12/177 (6%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 +    L    +  E ++L  L+   +        ++   +  +E + ++  + +
Sbjct: 11  PSEDREISALSLPPHSTEAEQSVLGGLMLENSAWDRIADVVSGEDFYRHEHRLIFRAIAN 70

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
              E +      + + L         ++L+       L +           + Y + +  
Sbjct: 71  LINESRPADVITVQESLERN------EELEAAGGFNYLITLAQNTPSAANIRRYAEIV-- 122

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
             R R + RQ  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 123 --RERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 175


>gi|297288071|ref|XP_001114534.2| PREDICTED: cut-like 1 [Macaca mulatta]
          Length = 1514

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 101/286 (35%), Gaps = 22/286 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 90  DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 149

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q    +        ++  ++   +   +          KL +     ++  L T +   
Sbjct: 150 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS--LQTALEKT 207

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +     +E++ + + L   +   E      E + ++L        L 
Sbjct: 208 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 267

Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598
              ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++
Sbjct: 268 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 327

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           E+Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 328 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 373


>gi|134114219|ref|XP_774357.1| hypothetical protein CNBG3380 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256992|gb|EAL19710.1| hypothetical protein CNBG3380 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1056

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 80/242 (33%), Gaps = 28/242 (11%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R   +  + +   +L  K   E S   +         D +    R     L +     + 
Sbjct: 593 RDQQALQLEEARAELRDKDDREKSRLIKASHPEENEEDGEVEKMRKEMKELQRKVGEMEG 652

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-----LPE 535
              E   L         L+E ++EL +++   +E+Q L + L S   +   +       +
Sbjct: 653 KEEEVQALR------QELEEVHRELEEVKDQGSEVQALRTELSSAHHQLDEYELMKADVD 706

Query: 536 EIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            + + L +     +   ++    + ++       A  E    DV         L +    
Sbjct: 707 ALQKELADLRHHVQELKQVKAADEEEIETLLDQVAKLEVESRDVEDLKYHFDQLKQVKTA 766

Query: 591 LSRQKEEIEKQIAQVTAKGEAE-----KTAILISI-------LHEVHIQIHQIESQEAMI 638
              + E + +QI ++ A+   E     K   L             V +++ ++ S+E  +
Sbjct: 767 NEEEIENLLRQIEKLKAERRQEDEWKSKVEELSKRVDMEGMRRQNVELELEEVRSREIKL 826

Query: 639 EG 640
           EG
Sbjct: 827 EG 828



 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 40/120 (33%), Gaps = 11/120 (9%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           +   E +                   L+++        L      A + D     +  L 
Sbjct: 560 AAQSEARDLEIRLAKALADAAATSRQLEEVKNSRDQQALQLEEARAELRDKDDREKSRLI 619

Query: 584 ---------LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                           + ++ +E+++++ ++   G+ E+   L   L EVH ++ +++ Q
Sbjct: 620 KASHPEENEEDGEVEKMRKEMKELQRKVGEME--GKEEEVQALRQELEEVHRELEEVKDQ 677


>gi|260588425|ref|ZP_05854338.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
 gi|260541299|gb|EEX21868.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
          Length = 370

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 41/324 (12%), Positives = 91/324 (28%), Gaps = 54/324 (16%)

Query: 61  FYYCFSCHVKGDHLSFLSALLG-----CSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT 115
            ++C++C    D    +           SF ++V+ +A I+                   
Sbjct: 66  IFHCYTCTDTYDVYELVIRARRKQGITISFPQAVKYVANISN------------------ 107

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
                      F+        +K   +    R   S       +    +    + E    
Sbjct: 108 ---------NVFYKKDHVIQEEKIDDWNWINRLKSSQN--KKSIPQLSEINEHILEVFCP 156

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
                      G         + +   +N++I P R   G++I   GR L++ +      
Sbjct: 157 YPHEVWLEEGIGKDSMKKYQISYWG-EQNKIIIPHRDIDGRLIGIRGRALNQSDLEAKRK 215

Query: 236 SPETIL------FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL--C 287
                +         G NLY        +++  +          II+ E    VL     
Sbjct: 216 YMPITIQGKVLKHTLGNNLYGLCQNEEAIKRMGK----------IIIFESEKSVLLCDTY 265

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
                  V+  G+ +T+ Q R++       +++ FD +    ++            +   
Sbjct: 266 YQQNNFSVAVCGSNITDTQCRMIRSLGVSEVMIAFDKEYENAKSKLAEAYYNKLLKLAYK 325

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTA 370
              +  +    D +  ++     A
Sbjct: 326 LTPYCTVYLLMDTEDLLKQKDSPA 349


>gi|156363665|ref|XP_001626162.1| predicted protein [Nematostella vectensis]
 gi|156213028|gb|EDO34062.1| predicted protein [Nematostella vectensis]
          Length = 1604

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 78/226 (34%), Gaps = 21/226 (9%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA- 485
            I D L +L ++         + ++   ++   K   + L   +             EA 
Sbjct: 305 EIFDELNKLEERLQDLEDLQAQRFELQKKYDSLKEKYETLRAENDDFVGQINAYVDLEAK 364

Query: 486 ---ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
                      +  ++ E  +   +         +L   +     +      +++ + L 
Sbjct: 365 GREQFARLQAKYDELVAENAELAENCDLLEKNEARLKKEIDDLRAQ--LADNDDLEKNLD 422

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +      +++L+ +     +     E  I+ +R+   +   L      L R+ ++ +K +
Sbjct: 423 D------MRKLESKYELVIIEKEKLEREIIVLREVETKYKLLVIEKEGLERKLKDEQKVV 476

Query: 603 AQVTAKGE---------AEKTAILISILHEVHIQIHQIESQEAMIE 639
           +++  K E          EK     + + E+  ++ ++E ++ ++E
Sbjct: 477 SELKIKLERFSEDGTELEEKIRSQRNRITELERRVKELEKEKNLLE 522


>gi|293604278|ref|ZP_06686685.1| replicative DNA helicase DnaB [Achromobacter piechaudii ATCC 43553]
 gi|292817155|gb|EFF76229.1| replicative DNA helicase DnaB [Achromobacter piechaudii ATCC 43553]
          Length = 460

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 58/196 (29%), Gaps = 15/196 (7%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                L   ++       E ++L  L+            L +  +  ++ + +W  +   
Sbjct: 4   PADPQLEYLRVPPHSIEAEQSVLGGLLLDNTAWDRIADVLVEEDFYRHDHRLIWHHIARL 63

Query: 526 FVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
               +      +++ L   G  E       L  L      A       E           
Sbjct: 64  IGLARPADVITVNESLISAGKAEDSGGLAYLNALAHNTPSAANIRRYAEIVRERAMLRKL 123

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAK---------GEAEKTAILISILHEVHIQIHQ 630
            ++A       L+ Q +E  + + +  +K           A     +  +L +V  +I +
Sbjct: 124 VSIADEISSAALNPQGKEARQLLDEAESKVFKIAQEGSRGAAGFQEIQPLLTQVVERIDE 183

Query: 631 IESQEAMIEGFGKMSG 646
           +  +E   +  G  +G
Sbjct: 184 LYHREGSSDVTGVPTG 199


>gi|148277064|ref|NP_853530.2| protein CASP isoform a [Homo sapiens]
 gi|296439379|sp|P39880|CUX1_HUMAN RecName: Full=Homeobox protein cut-like 1; AltName: Full=CCAAT
           displacement protein; Short=CDP; AltName: Full=Homeobox
           protein cux-1
          Length = 1505

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 101/286 (35%), Gaps = 22/286 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 90  DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 149

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q    +        ++  ++   +   +          KL +     ++  L T +   
Sbjct: 150 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS--LQTALEKT 207

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +     +E++ + + L   +   E      E + ++L        L 
Sbjct: 208 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 267

Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598
              ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++
Sbjct: 268 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 327

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           E+Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 328 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 373


>gi|300300|gb|AAB26579.1| CCAAT displacement protein, CDP [human, Peptide, 1505 aa]
          Length = 1505

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 101/286 (35%), Gaps = 22/286 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 90  DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 149

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q    +        ++  ++   +   +          KL +     ++  L T +   
Sbjct: 150 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS--LQTALEKT 207

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +     +E++ + + L   +   E      E + ++L        L 
Sbjct: 208 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 267

Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598
              ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++
Sbjct: 268 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 327

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           E+Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 328 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 373


>gi|38492937|pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
 gi|38492938|pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
 gi|38492939|pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
 gi|5231279|dbj|BAA81745.1| ClpB [Thermus thermophilus]
 gi|8051691|dbj|BAA96085.1| ClpB [Thermus thermophilus]
          Length = 854

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 68/204 (33%), Gaps = 18/204 (8%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INHPA 496
           + I +     R ++           +  +++    K ++     + ++A++    ++H  
Sbjct: 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRY 371

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG--------E 548
           I + +  +   I   +    +L   L S   E      +++   +              E
Sbjct: 372 ITERRLPD-KAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQE 430

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            LK ++ ++       A   A     R+  ++      R   + R+ E  E+Q       
Sbjct: 431 RLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQ------- 483

Query: 609 GEAEKTAIL-ISILHEVHIQIHQI 631
            +  + A L    L ++  ++  +
Sbjct: 484 YDLNRAAELRYGELPKLEAEVEAL 507


>gi|29833783|ref|NP_828417.1| ATP-dependent Clp protease [Streptomyces avermitilis MA-4680]
 gi|54035822|sp|Q826F2|CLPB2_STRAW RecName: Full=Chaperone protein ClpB 2
 gi|29610907|dbj|BAC74952.1| putative ATP-dependent Clp protease [Streptomyces avermitilis
           MA-4680]
          Length = 879

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 71/214 (33%), Gaps = 16/214 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++K+I + +   R +++          +  +++    + ++     +++ AL+    ++H
Sbjct: 324 YRKHIEKDAALERRFQQVLVDEPSVEDTISILRGLRERLEVFHGVKIQDTALVSAATLSH 383

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +    +L + + S   E            + E    +      
Sbjct: 384 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDEITRRVTRLEIEEAALSKESD--- 439

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------AQVTA 607
                  L     E   +      + A   ++  R   R+ +E+ +++        +   
Sbjct: 440 -PASKTRLEELRRELADLRGEADAKHAQ--WEAERQAIRRVQELRQELEQVRHEAEEAER 496

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEG 640
             +  + A L    L ++  ++   E Q A  +G
Sbjct: 497 AYDLNRAAELRYGRLQDLERRLAAEEEQLAAKQG 530


>gi|315224003|ref|ZP_07865844.1| conserved hypothetical protein [Capnocytophaga ochracea F0287]
 gi|314945974|gb|EFS97982.1| conserved hypothetical protein [Capnocytophaga ochracea F0287]
          Length = 692

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 90/340 (26%), Gaps = 46/340 (13%)

Query: 30  RKTNAVKGDYWACCPFHDEKTPSFHCNDSKG-FYY--CFSCH-VKGDHLSFLSALLGCSF 85
           +    V  ++    PF+D+K  S +    K   Y    F      GD   FL        
Sbjct: 23  QGNWRVGKNFK--NPFYDDKNASCNVYKDKQGIYKMKDFGNDTFSGDCF-FL-------- 71

Query: 86  IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145
              V  L       L   +             I ++++     H  L+ +        + 
Sbjct: 72  ---VGYL-----YQLDCRNASD---------FIEILKIINRDLHLGLEESTS------II 108

Query: 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR 205
            +          +       +    +  ++    EE        I  +            
Sbjct: 109 TQKPQIPPTITIESTQVETKKSISYQFTQKPFIQEELAYWQKYGITQEILNRYNVISLQS 168

Query: 206 LIFPIRSSRGQVIAFGGRTLSKGESVKYL-NSPETILFHKGKNLYNFFGALNYLQKSIRK 264
                +   G+  +          +  +  +      F K + LY              +
Sbjct: 169 YSNTNKD--GRPYSIASTYNEWMFAYLFKKHLKIYRPFSKLRFLYGGNPE----NYCFGE 222

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKLSPRIVLCFDG 323
                    +    G  DV+SL   G   +  +     +   +L+ L      +VL FD 
Sbjct: 223 SQLPLQGDILFFTAGEKDVMSLASRGFSAICFNSETAHIPLQKLQKLKMRFRHLVLLFDS 282

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
           D+ G RA+ +    +    +    +      + +D   + 
Sbjct: 283 DETGKRASLEQQAQLAPLEVFRLVLPLSGTKKDKDISDYF 322


>gi|225679604|gb|EEH17888.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 2430

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 41/433 (9%), Positives = 125/433 (28%), Gaps = 39/433 (9%)

Query: 234  LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
             N+P+  +      L+     L             +      L      + S       +
Sbjct: 1394 FNTPQPEMEKSSGELFGGGPRLIPSYAIRSNAPSPSPQGSRPLFANVPKIDSAFGGPAHH 1453

Query: 294  VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV-- 351
            ++S   +++++    +    +P I    D D     +  +   L          VN +  
Sbjct: 1454 ILSPQRSSISDSNSPIRHLNNPEIEHVSDWD--DAISVGEDAKLRQRSRFFDRHVNEIVG 1511

Query: 352  -LLSRGEDPDSFIRCYGKTAFEKLIVESLPL--VDMLWKRETENRSFNTPDERAELEIHL 408
             ++    DP        + + + +    +     +   +R       ++  +  + E   
Sbjct: 1512 GIIEDRLDPLERTLGVIQQSIDIIAANQVLNQSHNQNTRRSASAGVEHSDADDEDDEEDD 1571

Query: 409  KNCINHIKDQKLRY-----YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
            +      +    R         QA+ + L     +   E          +          
Sbjct: 1572 EALRYRSRSPLNRRGRHVNSIKQAVAEALASHVPRI--EVPAPPPAPVVDLTEIHVALAE 1629

Query: 464  QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY-----QELADIRYDNNELQKL 518
             + + +      + + P   +  ++  +  HP +            +  ++     LQ +
Sbjct: 1630 LKTLAAPKPVEPVPEPPIDLKQVIIDAISEHPRLNAPVESVSHTDNIEALKMQVEGLQAM 1689

Query: 519  WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
               +  +  E++Y +  +    +       LL+  +            TE    D+++  
Sbjct: 1690 LR-VADERAEKEYQIRRDAQDSV--AQCQRLLRIAEEDAAYHRELVMKTEEAFRDLKERT 1746

Query: 579  QQALALYKRFRLLSRQKEE---------------IEKQIAQVTAKGEAEKTAILI--SIL 621
                   +R   L ++++E               +E+ + +     +  ++ + +     
Sbjct: 1747 IPETERIERQSRLLQEQQESLQLTLSELSGKNISLEETLDEYRVSADQWRSQLEMVKREN 1806

Query: 622  HEVHIQIHQIESQ 634
             ++ + I+ ++ Q
Sbjct: 1807 KDLKLTINHMKEQ 1819


>gi|55981456|ref|YP_144753.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Thermus
           thermophilus HB8]
 gi|66774200|sp|Q9RA63|CLPB_THET8 RecName: Full=Chaperone protein ClpB
 gi|55772869|dbj|BAD71310.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Thermus
           thermophilus HB8]
          Length = 854

 Score = 47.2 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 68/204 (33%), Gaps = 18/204 (8%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INHPA 496
           + I +     R ++           +  +++    K ++     + ++A++    ++H  
Sbjct: 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRY 371

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG--------E 548
           I + +  +   I   +    +L   L S   E      +++   +              E
Sbjct: 372 ITERRLPD-KAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQE 430

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            LK ++ ++       A   A     R+  ++      R   + R+ E  E+Q       
Sbjct: 431 RLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQ------- 483

Query: 609 GEAEKTAIL-ISILHEVHIQIHQI 631
            +  + A L    L ++  ++  +
Sbjct: 484 YDLNRAAELRYGELPKLEAEVEAL 507


>gi|328702392|ref|XP_001952666.2| PREDICTED: hypothetical protein LOC100159915 [Acyrthosiphon pisum]
          Length = 930

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 51/143 (35%), Gaps = 8/143 (5%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            N  + K+   +  + +E        +          +LL++    V +  L     +  
Sbjct: 724 QNPLVAKIKQIVNREGLEDAAADVPALVSHAVAERLKDLLEKFA-VVAEHRLDFNKADKR 782

Query: 571 IVDVRQGYQQALALYKRFRLLSRQK-----EEIEKQIAQVTAKGEAEKTAILISILHEVH 625
              + +  +  +   +    + R+K      E+  + A+  +K E  + A L +   E+ 
Sbjct: 783 YE-ITRNIRGQIKCLEEIDKVERKKQDEMERELLLRAAKSRSKNEDPEQAKLKAKAKEMQ 841

Query: 626 I-QIHQIESQEAMIEGFGKMSGR 647
             ++ ++  +EA +     +  R
Sbjct: 842 RVEMEELRQREANLTALNAIGPR 864


>gi|224118916|ref|XP_002317937.1| predicted protein [Populus trichocarpa]
 gi|222858610|gb|EEE96157.1| predicted protein [Populus trichocarpa]
          Length = 689

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 74/197 (37%), Gaps = 21/197 (10%)

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI-- 508
           ++  R  + +  SQ+  +      +  KK S  E   L       ++L+   +E+ ++  
Sbjct: 40  EQGLRIAENQENSQKNRRKLAESTRDFKKASSDEKLGL-----FNSLLKGFQEEVDNLTK 94

Query: 509 --RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
             ++  N    ++  L+          P      + E+     L +L+ + R   +    
Sbjct: 95  RAKFGENAFLNIYQKLYEA------PDPYPALASISEQDLK--LSELESESRKMKVELEE 146

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE--- 623
                  ++        L +R R L +Q EE  K+I ++  +  AE+    + +L E   
Sbjct: 147 FRTEAAHLKNQQATIRRLEERNRQLEQQMEEKVKEIVEMKQRSLAEENQKTLEVLKEREQ 206

Query: 624 -VHIQIHQIESQEAMIE 639
            +  Q+ Q +   A I+
Sbjct: 207 SLQDQLRQAKDSVATIQ 223


>gi|320104316|ref|YP_004179907.1| hypothetical protein Isop_2792 [Isosphaera pallida ATCC 43644]
 gi|319751598|gb|ADV63358.1| MJ0042 family finger-like protein [Isosphaera pallida ATCC 43644]
          Length = 652

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 71/222 (31%), Gaps = 10/222 (4%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R    +      +      I   +         A+       +  L   S+ +   +   
Sbjct: 64  RKASCKFCSHPFKLDIALQIPPTAQDAAVTSAAAQSPPFSPSAAALEPRSVPEPVSTVAA 123

Query: 481 SLREAALLLTLINHPAILQEQYQ---ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 ++        +  E  +   +LA++     E  +L     +   + +    E  
Sbjct: 124 DELNRRVIELAQERDRLRAEAEEARRQLAELAALKAERDRLEREAHNSRAQSEALRQEAE 183

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK-- 595
             R        +  + DR   +     +T EA   +  +     L L  +  L+ +Q+  
Sbjct: 184 RARAQLTELEAIRAERDRLRDEVLDLGSTLEALRDETDR--LDQLRLEHQAALVEKQRVE 241

Query: 596 ---EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              + +E+++A++    + E+   L +   E+  Q+ +  SQ
Sbjct: 242 AQAQALERRLAELPEGFDPERVLALRAERDELAAQLDRTRSQ 283



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/202 (9%), Positives = 60/202 (29%), Gaps = 13/202 (6%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
             + + E +      +  A    ++      +++   + +     S  ++  L       
Sbjct: 126 LNRRVIELAQERDRLRAEAEEARRQLAELAALKAERDRLEREAHNSRAQSEALR------ 179

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-LPEEIHQRLCERGFGELLK--- 551
              +    +L ++     E  +L   +       +      +   +L       L++   
Sbjct: 180 QEAERARAQLTELEAIRAERDRLRDEVLDLGSTLEALRDETDRLDQLRLEHQAALVEKQR 239

Query: 552 -QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            +   Q  +  L       +   V     +   L  +      Q +E++ +I +      
Sbjct: 240 VEAQAQALERRLAELPEGFDPERVLALRAERDELAAQLDRTRSQVDELKDEIQRAGRL-- 297

Query: 611 AEKTAILISILHEVHIQIHQIE 632
            E    L +   ++  ++ Q++
Sbjct: 298 VEMYETLRAERDDLVNRLEQLQ 319


>gi|256841353|ref|ZP_05546860.1| DNA primase [Parabacteroides sp. D13]
 gi|256737196|gb|EEU50523.1| DNA primase [Parabacteroides sp. D13]
          Length = 316

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 8/70 (11%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I++    I I++ +    +    ++  N      W   P  +E   SF  N +   ++ F
Sbjct: 3  IQEAKQ-IKIADYLQSLGHCPVKQQGANL-----WYKSPLRNESEASFKVNTTMNSWFDF 56

Query: 66 SCHVKGDHLS 75
               G+ ++
Sbjct: 57 GVGKGGNIIT 66


>gi|300794608|ref|NP_001178626.1| centrosomal protein of 120 kDa [Rattus norvegicus]
 gi|109507323|ref|XP_001055603.1| PREDICTED: centrosomal protein 120-like [Rattus norvegicus]
          Length = 989

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 648 PRETLEYKAALELEMWKEMQEDIFESQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 705

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L +L  +     +      ++    + ++  + + +Q S+ + +   
Sbjct: 706 AEYSILEGKLQQALTELESREQQLVTAETELQRERKELQLERERNLQELQDSVRRARDDC 765

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   L  L           Q+L D       L+K +         +     +  
Sbjct: 766 VHQVELERLKLKQLEEDK---HRLQQQLNDAENKYKILEKDFQQFKDQQNNKPEIRLQSE 822

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 823 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 879

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+   +  A  E +        L ++  +++++  QE
Sbjct: 880 LEQMRLRYLAAEEKDTVKTEQQELLDIRNELNRLRQQE 917


>gi|119718576|ref|YP_925541.1| ATPase [Nocardioides sp. JS614]
 gi|119539237|gb|ABL83854.1| ATPase AAA-2 domain protein [Nocardioides sp. JS614]
          Length = 866

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 82/263 (31%), Gaps = 44/263 (16%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGY-----------GRYWKKNARHRDQKGPSQRLMQSSLV 472
           Y     +RL+ + ++                   G     ++           L +  L 
Sbjct: 255 YRGEFEERLKAVLEEIKAAGGQVITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELH 314

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
               +     RE      +   PA+ + ++Q++        +  ++   +   +      
Sbjct: 315 MIGATTLDEYRER-----IEKDPAL-ERRFQQVFVGEPSVEDTIQILRGIQEKYEAHHGV 368

Query: 533 --LPEEIHQR--LCERGF------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA- 581
                 +     L +R         + +  +D       +   ++   I  +R+  ++  
Sbjct: 369 RITDAALVAAATLSDRYISGRQLPDKAIDLIDEAASRLRMEIESSPEEIDRLRRAVERLK 428

Query: 582 -----------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-----ILISILHEVH 625
                       A  +R   L +   + E+++  + A+ E EK+       L   L ++ 
Sbjct: 429 MEEFALAKESDEASKERLANLRQDLADHEEELRALEARWEREKSTLEGEGELRRQLDQLR 488

Query: 626 IQIHQIESQEAMIEGFGKMSGRL 648
           ++  +++ +  + +    + GR+
Sbjct: 489 MEADRLQREGDLGKASELLYGRI 511



 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/202 (10%), Positives = 71/202 (35%), Gaps = 2/202 (0%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++ I +     R +++          + ++++    K +      + +AAL+       
Sbjct: 324 YRERIEKDPALERRFQQVFVGEPSVEDTIQILRGIQEKYEAHHGVRITDAALVAAATLSD 383

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             +  +      I   +    +L   + S   E           ++ E    +   +  +
Sbjct: 384 RYISGRQLPDKAIDLIDEAASRLRMEIESSPEEIDRLRRAVERLKMEEFALAKESDEASK 443

Query: 556 Q-VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           + + +     A  E  +  +   +++  +  +    L RQ +++  +  ++  +G+  K 
Sbjct: 444 ERLANLRQDLADHEEELRALEARWEREKSTLEGEGELRRQLDQLRMEADRLQREGDLGKA 503

Query: 615 AILI-SILHEVHIQIHQIESQE 635
           + L+   +  +  QI    + E
Sbjct: 504 SELLYGRIPALEQQIEAAGAAE 525


>gi|148677958|gb|EDL09905.1| expressed sequence AU016693, isoform CRA_d [Mus musculus]
          Length = 987

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 96/290 (33%), Gaps = 19/290 (6%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 633 PRETLEYKAALELEMWKEMQEDIFESQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 690

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L +L  +     S      ++    + ++  + + +Q S+ + +   
Sbjct: 691 AEYSILEGKLQKALTELETREQQLASAEAELQRERKELQLERERNLQELQDSVRRARDDC 750

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   L  L      LQ+Q  +  +       L+K +         +     +  
Sbjct: 751 VYQVELERLKLKQLEEDKQRLQQQLNDAGN---KYKTLEKEFQQFKDQQNNKPEIRLQSE 807

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWS-----ATTEANIVDVRQGYQQALALYKRFRL-- 590
              L      EL ++L+   +    +      A  E   +   +G +Q L+  + FR   
Sbjct: 808 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQVRGREQTLSSLRSFREQE 866

Query: 591 -----LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                L +Q+EE+E+   +  A  E E        L ++  +++++  QE
Sbjct: 867 SQMARLKKQQEELEQMRLRYLAAEEKETVRTEQQELLDIRNELNRLRQQE 916


>gi|297703133|ref|XP_002828505.1| PREDICTED: ankyrin repeat domain-containing protein 24-like,
           partial [Pongo abelii]
          Length = 742

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/198 (11%), Positives = 66/198 (33%), Gaps = 3/198 (1%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
            +  ++ +   S + R  ++    R +    ++ + ++  +    +    RE    + L 
Sbjct: 502 SEALRQSVVPASEHRRLQEEALELRGRAASLEQEVVATGKEAARLRAELERERVCSVALS 561

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
            H  I+      +A +     EL +          E      E +  +         L  
Sbjct: 562 EHERIVGTLQANVAQLEGQLEELGRRHE---KTSAEVFQVQREALFMKSERHAAEAQLAT 618

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
            ++Q+R     +          ++   +A    K+   LS++   +++ + +  A     
Sbjct: 619 AEQQLRGLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALKEQPASLATP 678

Query: 613 KTAILISILHEVHIQIHQ 630
           +   L   + ++  Q+ +
Sbjct: 679 EVEALRDQVKDLQQQLQE 696


>gi|313206151|ref|YP_004045328.1| primary replicative DNA helicase [Riemerella anatipestifer DSM
           15868]
 gi|312445467|gb|ADQ81822.1| primary replicative DNA helicase [Riemerella anatipestifer DSM
           15868]
 gi|315023165|gb|EFT36178.1| Replicative DNA helicase [Riemerella anatipestifer RA-YM]
 gi|325336403|gb|ADZ12677.1| Replicative DNA helicase [Riemerella anatipestifer RA-GD]
          Length = 523

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           S+ +GK+       E  ++   +     L   Y  L    + +   Q+++  +   F + 
Sbjct: 20  SISQGKMPPNAVDLERLVIGAFLIDKKALDNTYDLLTPEVFYDPRHQEIYRIIIKLFGDN 79

Query: 530 KYFLPEEIHQRLCE------RGFGELLKQLDRQVRDAGLWSATTEANIVD-----VRQGY 578
                  + Q L +       G    +  L   +  +          +       +    
Sbjct: 80  TPIDILTVIQELKKQEKLNLAGGDAYIIDLTTGISSSAHIEYHARVILEKYILRSLINVS 139

Query: 579 QQAL-ALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              +   YK    +    +  E+   +I   T K   +  + L+S   E    +   E  
Sbjct: 140 ANVIDNSYKESTDVFELLDRAEQSFFEITNGTIKKGFDTASSLVSEAIEKIKSLKDKEGL 199

Query: 635 EAMIEGF 641
             +  GF
Sbjct: 200 SGIPSGF 206


>gi|240146492|ref|ZP_04745093.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257201397|gb|EEU99681.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
          Length = 126

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 15/93 (16%)

Query: 1  MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          MNY +  I      + + + +  Q     +        +       HD    S     +K
Sbjct: 1  MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
           F +  S    G  + F+    G SF E+VQ L
Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQML 79


>gi|218888835|ref|YP_002437699.1| putative ClpA/B-type chaperone [Pseudomonas aeruginosa LESB58]
 gi|218769058|emb|CAW24818.1| probable ClpA/B-type chaperone [Pseudomonas aeruginosa LESB58]
          Length = 902

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 43/141 (30%), Gaps = 26/141 (18%)

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L      +       +   + +      ++ L+ ++      SA   A     R      
Sbjct: 424 LLDTACARTAISLHAVPAEVDDS--RRRIEALETELAIIRRESAIGVATAERQRNAETLL 481

Query: 582 LALYKRFRLLSRQKEEIEKQ------------------------IAQVTAKGEAEKTAIL 617
               +R   L ++  E ++                         + +  A+ + E+   L
Sbjct: 482 AEERERLSALEQRWAEEKRLVDELLETRARLRAAAEAVDAGGVPLGEGEARLDEEQRQAL 541

Query: 618 ISILHEVHIQIHQIESQEAMI 638
            + L E+  Q+  ++ +E +I
Sbjct: 542 HARLAELQAQLSALQGEEPLI 562


>gi|297196720|ref|ZP_06914118.1| replicative DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197720081|gb|EDY63989.1| replicative DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 475

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/141 (9%), Positives = 42/141 (29%), Gaps = 10/141 (7%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  ++     + +    L    +       +++ +   +   +   P  +  RL 
Sbjct: 18  AEKGVLRAMLLSKDAIADIVDTLHGHDFYRPAHDLIYTTILDLYGRGETTDPLAVAARLT 77

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           ++G       L++    A + +     +         Q  A   +   + R+ +     I
Sbjct: 78  QQG------SLEKAGGSAYITALVNGPSS----ARSWQTNADRVQNAAMLRRTKIAAIHI 127

Query: 603 AQVTAKGEAEKTAILISILHE 623
             + +  + +    +      
Sbjct: 128 ENLASDADLDAVDRIADQAQA 148


>gi|167762587|ref|ZP_02434714.1| hypothetical protein BACSTE_00943 [Bacteroides stercoris ATCC
           43183]
 gi|167699693|gb|EDS16272.1| hypothetical protein BACSTE_00943 [Bacteroides stercoris ATCC
           43183]
          Length = 864

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 70/212 (33%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++    +      +  +++    + +      +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVMVNEPDTLSTISILRGLKERYENHHHVRIKDDAIIAAVELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      +     +          +L  
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDRLKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           +     L     +      +  +Q    L  + +    + E ++ +  +   +G+  K  
Sbjct: 437 EQIGKELAELKEQEKSYKAK--WQNEKTLVNKIQQNKVEIENLKFEADKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L   + E   ++H+++  +AMI+
Sbjct: 495 EIRYGKLQALNQEIEETQQKLHEMQGDQAMIK 526



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 70/264 (26%), Gaps = 34/264 (12%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + +  +DM              +    +   +K     I        
Sbjct: 220 RILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERLKAVVNEVKKSEGDI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E    + ++N P  L                   +   L   +    +        R+ +
Sbjct: 328 ERRFQIVMVNEPDTLSTI---------------SILRGLKERYENHHHV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + D  L     +       +   +  ++ +    +SR+ +++E +  
Sbjct: 366 DAIIAAVELSNRYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIERE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQ 627
            +  + +  K   +   L E+  Q
Sbjct: 426 AIKRENDRLKLEQIGKELAELKEQ 449


>gi|160931710|ref|ZP_02079104.1| hypothetical protein CLOLEP_00542 [Clostridium leptum DSM 753]
 gi|156869355|gb|EDO62727.1| hypothetical protein CLOLEP_00542 [Clostridium leptum DSM 753]
          Length = 820

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 47/143 (32%), Gaps = 7/143 (4%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           I   A L+ ++Q +        E   +   L   +             ++ +      ++
Sbjct: 331 IEKDAALERRFQPVMVGEPTVQEAAAILKGLRDRYEAHHKV-------KITDEAIEAAVE 383

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
              R + D  L     +       +   +   +    + L  + +E+E++ A      + 
Sbjct: 384 LSSRYISDRYLPDKAIDLIDEAASRVRLRCYTVPDDLQQLEEKSKELEQEKAAAVNSQDF 443

Query: 612 EKTAILISILHEVHIQIHQIESQ 634
           E+ A L   +  +  Q+ +  +Q
Sbjct: 444 ERAASLRDEVRHLKQQLEEQRNQ 466


>gi|300871877|ref|YP_003786750.1| replicative DNA helicase [Brachyspira pilosicoli 95/1000]
 gi|300689578|gb|ADK32249.1| replicative DNA helicase [Brachyspira pilosicoli 95/1000]
          Length = 465

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 44/146 (30%), Gaps = 4/146 (2%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E +LL  ++ +   +     ++    + +   + L+  +            E   + L 
Sbjct: 10  AEESLLGAMLQNSQAISAAISKIVSKDFYSERNRLLYECILEMHNRGIAVNAETTLRYLK 69

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           E G  + + Q D       +      +      + Y + +A     R L    ++I+   
Sbjct: 70  ENGLFDKIIQNDEVYLTKII----DGSPFHQNAKYYAEIIAEKSLLRDLITATQDIQNSA 125

Query: 603 AQVTAKGEAEKTAILISILHEVHIQI 628
            +       E        + EV  + 
Sbjct: 126 YEAKDSETKEIADFAEKRIFEVTQRR 151


>gi|307214547|gb|EFN89532.1| Myosin heavy chain, non-muscle [Harpegnathos saltator]
          Length = 1830

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 357  EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
                 + R Y +   EK ++      ++    E E         + ELE  L +    I+
Sbjct: 731  HSAQEYERKYQQAIEEKTMLAEQLQAEVELCAEAEEMRARLAARKQELEEILHDLEARIE 790

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            +++ R       + +LQ        +        +K    + Q     + ++  L   + 
Sbjct: 791  EEEERSAALNQEKKKLQLNISDLEEQLEEEEAARQKLQLEKVQCDAKIKKLEEDLALSED 850

Query: 477  SKKPSLREAALLLTLINHPAILQEQYQE----LADIRYDNNE-LQKLWSFLFSDFVEQKY 531
            + +  L+E  +L    N  +    + +E    L+ ++  +   +  L   L  D  +++ 
Sbjct: 851  TNQKLLKEKKILEERANDLSQTLAEEEEKAKHLSKLKAKHEATIADLEERLLKDHQQRQE 910

Query: 532  FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                +           E L +   QV +  L     E  +  V     +  A   + +  
Sbjct: 911  VDRSKRKVETEVSDLKEQLAERKTQVEELQLQLGKREEELNQVMAKMDEEGAAKAQAQKA 970

Query: 592  SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             R+ E    ++ +   + E         +  +++ ++  ++++
Sbjct: 971  LRELESQLAELQE-DLEAEKAARGKAEKLRRDLNEELEALKNE 1012



 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 32/335 (9%), Positives = 97/335 (28%), Gaps = 36/335 (10%)

Query: 329  RAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKR 388
            R     ++               + +  +D +  +  + K   + L         +    
Sbjct: 1457 RDFEAELEDERKQRAAAVAQRKKMEADYKDIEQQLEMHNKVKEDALKQLKKLQAQIKDCT 1516

Query: 389  ETENRSFNTPDERAELEIHLKNCINHIKD-------------------QKLRYYYSQAI- 428
                 +    DE A      +  +  ++                    +  R    + + 
Sbjct: 1517 RETEEARAARDELAAASKETERKVKSLEADLMQLTEDFASSERARRTAENERDELQEEVN 1576

Query: 429  --RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
               ++   +  +     +      ++    +          +   +  +        E +
Sbjct: 1577 NNANKGTLMLDEKRRLEARIATLEEELEEEQSNAEIVMDRARKGQIMIEQLTTDLATERS 1636

Query: 487  LLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                L +H  +L+ Q +EL       +  +  K  + +     +      +   +     
Sbjct: 1637 TTQKLESHKTLLERQNKELKAKLTELETAQRAKTKATIQQLESKINSLDEQLEIEAKERF 1696

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               ++ ++L+++++D  L       N    ++   QA  +  R + L RQ +E E++I++
Sbjct: 1697 AQQKINRKLEKKLKDLSLQLEEERRNSDQYKE---QAEKVNARMKALKRQLDEAEEEISR 1753

Query: 605  -------VTAKGEA--EKTAILISILHEVHIQIHQ 630
                      + +   E    L   L  +  ++ +
Sbjct: 1754 HKTMKRKAQREMDDMIESHEELTRELTHLKNKLRR 1788


>gi|114615146|ref|XP_527845.2| PREDICTED: CCAAT displacement protein [Pan troglodytes]
          Length = 1515

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 101/286 (35%), Gaps = 22/286 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 101 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q    +        ++  ++   +   +          KL +     ++  L T +   
Sbjct: 161 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS--LQTALEKT 218

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +     +E++ + + L   +   E      E + ++L        L 
Sbjct: 219 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 278

Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598
              ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++
Sbjct: 279 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 338

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           E+Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 339 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 384


>gi|217076913|ref|YP_002334629.1| replicative DNA helicase [Thermosipho africanus TCF52B]
 gi|217036766|gb|ACJ75288.1| replicative DNA helicase [Thermosipho africanus TCF52B]
          Length = 447

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 44/140 (31%), Gaps = 9/140 (6%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A++ +++  P  ++     +    + +N   +++  +   + E        I  RL 
Sbjct: 10  AEQAVIGSILIDPEAIENVISIVRSEDFYDNRHVEIFKAIEELYDENIPIDVISICDRLK 69

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +G      +LD    +  +             + Y Q +      R L        + +
Sbjct: 70  TKG------KLDMVGGELYVAQLADGVPTSAHAETYAQIVRDKSILRSL---ISAASRVV 120

Query: 603 AQVTAKGEAEKTAILISILH 622
            +  +  + ++       + 
Sbjct: 121 EEAMSDNDVDEILDNAERVI 140


>gi|321400107|ref|NP_001189472.1| protein CASP isoform d [Homo sapiens]
 gi|42793995|gb|AAH66592.1| CUX1 protein [Homo sapiens]
 gi|119570613|gb|EAW50228.1| cut-like 1, CCAAT displacement protein (Drosophila), isoform CRA_b
           [Homo sapiens]
          Length = 1516

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 101/286 (35%), Gaps = 22/286 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 101 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q    +        ++  ++   +   +          KL +     ++  L T +   
Sbjct: 161 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS--LQTALEKT 218

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +     +E++ + + L   +   E      E + ++L        L 
Sbjct: 219 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 278

Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598
              ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++
Sbjct: 279 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 338

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           E+Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 339 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 384


>gi|47213005|emb|CAF95397.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2594

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 59/196 (30%), Gaps = 4/196 (2%)

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
             S      + ++ H  Q     ++      + + S +   +E  +   L     +   +
Sbjct: 498 RASQAAGDHQTSSHHYSQLQNVPQVPSEQEDRKERSFQTQPQEQEVQAHLRAEQELQAHR 557

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD--RQVRD 559
            +EL        ELQ     L +   ++     +E+     +       ++L   RQ   
Sbjct: 558 QEELQAH--RQQELQAHRQELQAHRQQELQAHRQELQAHRQQELQAHRQQELQAHRQEEL 615

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
                   +A+     Q ++Q      R   L   ++E++    Q       ++      
Sbjct: 616 QAHRQQELQAHRQQELQAHRQEELQAHRQEELQAHRQELQAHRQQELQAHRQQELQAHRQ 675

Query: 620 ILHEVHIQIHQIESQE 635
            L     ++     QE
Sbjct: 676 ELQAHRQELQAHRQQE 691


>gi|302343981|ref|YP_003808510.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075]
 gi|301640594|gb|ADK85916.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075]
          Length = 744

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 13/87 (14%)

Query: 28  DRRKTNAVKGDYWACCPFHDEKTP--SFHCNDSKGFYYCFSCHV-KGDHLSFLSALLGCS 84
            R+    V GD            P  SF CN   G +  F+     GD +S ++A     
Sbjct: 33  KRQGREMVAGDIHG--------NPGKSFSCNTETGVWSDFATGESGGDVISLVAAQEELG 84

Query: 85  FIESVQRLAAIAGVPLPVVDPKIEKKE 111
             ++ + +A   G+    V PK ++K+
Sbjct: 85  QAKAARMIAEEIGLAP--VTPKPKRKD 109


>gi|291531754|emb|CBK97339.1| hypothetical protein EUS_23620 [Eubacterium siraeum 70/3]
          Length = 400

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 25/132 (18%)

Query: 1   MNYPRD------FIKDL-LIH-IPISNLIGQY--VDWDRRKTNAVKGDYWACCPFHDEKT 50
           M++ +         + +     + +   + +       +         Y        +K 
Sbjct: 1   MSFSKSKPSNYVTKEQIERARNVDMVEFLERTEGFSVKKSGNG-----YRC------DKH 49

Query: 51  PSFHCNDSKGFYYCFSCHVKGD-HLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPK 106
            S    + +  +Y  S    G+  ++F   + G SF E+V+ L     +      +    
Sbjct: 50  DSLFITNDRRGWYWNSRDEGGNNAIAFCMKIYGQSFTEAVKSLCGDIQIEYTPNKITSKP 109

Query: 107 IEKKEKIQTDLI 118
              K+K    LI
Sbjct: 110 SVSKDKESNRLI 121


>gi|194212722|ref|XP_001502736.2| PREDICTED: similar to centrosomal protein 164kDa [Equus caballus]
          Length = 1404

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/317 (10%), Positives = 98/317 (30%), Gaps = 47/317 (14%)

Query: 365  CYGKTAFEKLIVESLP-LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
                 A EK    +L    +   ++  E       +  A LE   +  +  +       +
Sbjct: 714  KEEMEASEKREQAALNAEKEKALQQLREQLEGERKEAVAALEKEHRAELERLSSSLEAKH 773

Query: 424  --YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                 +++ ++++  QK   +        ++ A+ +  +        S L++ K  +   
Sbjct: 774  RQVVSSLQKKMEEAQQKEEAQLQESLGRAEQRAQQKVHQVLEYEQELSGLLREKRQEVER 833

Query: 482  LREAALLLTLINHPAILQEQYQELADIR-------YDN-----NELQKLWSFLFSDFVEQ 529
              E  L      H  ++ E  ++              +       L++          + 
Sbjct: 834  EHERKLDKMKEEHRQVVAEAREQYEAEERKQRAELLGHLTGELERLRRAHERELETMRQD 893

Query: 530  KYFLPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
            +    E++ +R  E+     +L  +L+ + +D        +      R+  QQ L + ++
Sbjct: 894  QDRQLEDLRRRHREQERKLQDLEVELETRTKDVKATLTKLDIQEETARKEKQQLLDVQRK 953

Query: 588  ----------------------------FRLLSRQKEEIEKQIAQVTAKGE--AEKTAIL 617
                                         R L R  +E++ +  ++ ++ +    ++  L
Sbjct: 954  VALESEEAAATHQHLEEAKKEHTHLLESNRQLRRILDELQARKLELESQVDLLQTQSQRL 1013

Query: 618  ISILHEVHIQIHQIESQ 634
               + ++  +  +    
Sbjct: 1014 QKRVSDLEAEAQRKRDT 1030



 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 82/226 (36%), Gaps = 26/226 (11%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +    Q +R+ L+ L +          R  +   + +++   S++  Q++L   K   
Sbjct: 678 AEQEASLQRLREELESLQKAERASLEQRNR--QMLEQLKEEMEASEKREQAALNAEKEKA 735

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI- 537
              LRE            +  E+ + +A +     E +     L S    +   +   + 
Sbjct: 736 LQQLRE-----------QLEGERKEAVAALE---KEHRAELERLSSSLEAKHRQVVSSLQ 781

Query: 538 -----HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                 Q+  E    E L + +++ +         E  +  + +  +Q +   +  R L 
Sbjct: 782 KKMEEAQQKEEAQLQESLGRAEQRAQQKVHQVLEYEQELSGLLREKRQEVE-REHERKLD 840

Query: 593 RQKEEIEKQIAQVTAKGEAEKT---AILISILHEVHIQIHQIESQE 635
           + KEE  + +A+   + EAE+    A L+  L     ++ +   +E
Sbjct: 841 KMKEEHRQVVAEAREQYEAEERKQRAELLGHLTGELERLRRAHERE 886


>gi|329913485|ref|ZP_08275954.1| Replicative DNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545343|gb|EGF30578.1| Replicative DNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 483

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 66/209 (31%), Gaps = 22/209 (10%)

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS---LREAALLLTLINHPAILQEQ 501
                   N+  R    P  R      ++    + P      E ++L  L+   A     
Sbjct: 2   NKRERSDSNSESRSDSRPDFRSDSRPDIQLDALRVPPHSIEAEQSVLGGLLLDNAAWDRI 61

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
              +    +   + + ++  +       K      + + L   G  E +  L     +A 
Sbjct: 62  ADFVHQDDFYRYDHRLIFQHIVKLINGSKPADVITVFESLTSTGKAEEVGGL--SYLNAL 119

Query: 562 LWSATTEANIVDVRQGYQQALALYK---------------RFRLLSRQKEEIEKQIAQVT 606
             +  + ANI    +  +    L K               + + + +  +E E +I  + 
Sbjct: 120 AQNTPSAANIRRYAEIVRDRGVLRKLITVADEISGQAFNPQGKEVKQMLDEAESKIFAIA 179

Query: 607 AKGE--AEKTAILISILHEVHIQIHQIES 633
            +G   A+    +  +L +V  +I ++ +
Sbjct: 180 EEGSRGAQGFQEIQPLLTQVVERIDELYN 208


>gi|258517413|ref|YP_003193635.1| replicative DNA helicase [Desulfotomaculum acetoxidans DSM 771]
 gi|257781118|gb|ACV65012.1| replicative DNA helicase [Desulfotomaculum acetoxidans DSM 771]
          Length = 441

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 54/162 (33%), Gaps = 11/162 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K+  +    E +++ ++      + +  + ++   + +   + ++  +            
Sbjct: 4   KIPPQNMEAEQSVIGSVFLDKEAIYKVMRIISPDDFYSESHKLIYEVILDLNDNSAAIDL 63

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L +RG    L ++      A L      +          +  A     + L R 
Sbjct: 64  LTVTESLRQRGH---LDKIGGVTYIASLPGMVPTSAN-------VEYYAKIVEEKSLLRT 113

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +  +IA ++ +G  E    L+     + +++    S  A
Sbjct: 114 LISLASRIANMSYEGS-ENAQRLMDEAERMILELSSRRSASA 154


>gi|170742232|ref|YP_001770887.1| DnaB domain-containing protein [Methylobacterium sp. 4-46]
 gi|168196506|gb|ACA18453.1| DnaB domain protein helicase domain protein [Methylobacterium sp.
           4-46]
          Length = 482

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 11/122 (9%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E ALL  ++N+   L      +A   +   E   ++  + +         P  +   L +
Sbjct: 24  EQALLGAILNNNDALSLVTALVAPEHFFVPEHATIFQQIAAMVGAGLQASPITLKPYLGD 83

Query: 544 RGFGELL--KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
              G L   + L R   +A   S            GY Q +      R L R    ++++
Sbjct: 84  ADLGGLTVGEYLARLAAEATTVSGAP---------GYAQIIRSLATRRDLIRAAHRLQER 134

Query: 602 IA 603
             
Sbjct: 135 AR 136


>gi|124002875|ref|ZP_01687726.1| replicative DNA helicase [Microscilla marina ATCC 23134]
 gi|123991525|gb|EAY30933.1| replicative DNA helicase [Microscilla marina ATCC 23134]
          Length = 195

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 11/130 (8%)

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
             +   + EA L   LI  PA + +    L    +     ++++  +   F +       
Sbjct: 13  PPQAIDIEEAVLGAILIEQPAFM-QVIDLLQPDYFYKPAHKEVYQAILELFAQANPVDML 71

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + Q+L + G      +L+       +   T+  N     + +   L      + + R+ 
Sbjct: 72  TVTQQLRQTG------KLEMAGGPTFVMKLTSMVNSSANIEYHAHILV----EQAIKRRL 121

Query: 596 EEIEKQIAQV 605
            EI  +I + 
Sbjct: 122 IEISSKIRKA 131


>gi|58269356|ref|XP_571834.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57228070|gb|AAW44527.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1057

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 80/242 (33%), Gaps = 28/242 (11%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R   +  + +   +L  K   E S   +         D +    R     L +     + 
Sbjct: 594 RDQQALQLEEARAELRDKDDREKSRLIKASHPEENEEDGEVEKMRKEMKELQRKVGEMEG 653

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-----LPE 535
              E   L         L+E ++EL +++   +E+Q L + L S   +   +       +
Sbjct: 654 KEEEVQALR------QELEEVHRELEEVKDQGSEVQALRTELSSAHHQLDEYELMKADVD 707

Query: 536 EIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            + + L +     +   ++    + ++       A  E    DV         L +    
Sbjct: 708 ALQKELADLRHHVQELKQVKAADEEEIETLLDQVAKLEVESRDVEDLKYHFDQLKQVKTA 767

Query: 591 LSRQKEEIEKQIAQVTAKGEAE-----KTAILISI-------LHEVHIQIHQIESQEAMI 638
              + E + +QI ++ A+   E     K   L             V +++ ++ S+E  +
Sbjct: 768 NEEEIENLLRQIEKLKAERRQEDEWKSKVEELSKRVDMEGMRRQNVELELEEVRSREIKL 827

Query: 639 EG 640
           EG
Sbjct: 828 EG 829



 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 40/120 (33%), Gaps = 11/120 (9%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           +   E +                   L+++        L      A + D     +  L 
Sbjct: 561 AAQSEARDLEIRLAKALADAAATSRQLEEVKNSRDQQALQLEEARAELRDKDDREKSRLI 620

Query: 584 ---------LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                           + ++ +E+++++ ++   G+ E+   L   L EVH ++ +++ Q
Sbjct: 621 KASHPEENEEDGEVEKMRKEMKELQRKVGEME--GKEEEVQALRQELEEVHRELEEVKDQ 678


>gi|15606635|ref|NP_214015.1| replicative DNA helicase [Aquifex aeolicus VF5]
 gi|2983861|gb|AAC07414.1| replicative DNA helicase [Aquifex aeolicus VF5]
          Length = 468

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 8/119 (6%)

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQ 539
              E A+L +++  P  +    + L +  +  +E + L+  L + + E         I  
Sbjct: 11  ESAERAVLGSMLEDPENIPLVLEYLKEEDFCIDEHKLLFRVLTNLWSEYGNKLDFVLIKD 70

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            L ++        L +++    L     EA   D  +   + +      R + +   E+
Sbjct: 71  HLEKKN-------LLQKIPIDWLEELYEEAVSPDTLEEVCKIVKQRSAQRAIIQLGIEL 122


>gi|87119504|ref|ZP_01075401.1| DnaB helicase [Marinomonas sp. MED121]
 gi|86164980|gb|EAQ66248.1| DnaB helicase [Marinomonas sp. MED121]
          Length = 458

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 69/192 (35%), Gaps = 20/192 (10%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           +  S +   KL       E +++  L+  P    +  + +    +   E +++++ +   
Sbjct: 1   MENSDVSAIKLPPYSVEAERSVVGGLMLDPNAWDKVSELVMADDFYRPEHKQIFAVIAKL 60

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
             E +      I ++L +RG    L+ +        +  AT  +  +       +  ++ 
Sbjct: 61  ADESEPIDVVTIGEKLDKRG---ELEDVGGMTYLIEMAEATPSSANIASYADIVRERSVL 117

Query: 586 KRFRLLSRQK----------------EEIEKQIAQVTAKGEAEKTAILISILHEVH-IQI 628
           +R    + +                 +E E++I Q+   G+ +    + S +      +I
Sbjct: 118 RRLITTTNEISTRAFHPEGLTAAEVLDEAERKIFQIAEGGDKKGGPRIASDILSATVDKI 177

Query: 629 HQIESQEAMIEG 640
            ++  QE  I G
Sbjct: 178 DELYHQEGAITG 189


>gi|326955267|gb|AEA28962.1| DnaB domain protein helicase domain protein [Pseudonocardia
           dioxanivorans CB1190]
          Length = 431

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 54/214 (25%), Gaps = 3/214 (1%)

Query: 425 SQAIRDRLQQLF--QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Q +  R+      +  ITE         +  +  + +                S +   
Sbjct: 175 LQRLEGRVATSHAGRVSITEALSGAPPVAELPQRGEPRTSVTAPAALKTAAVPSSAEAER 234

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A +   +  P +     + L    + + +  + W  +              +   + 
Sbjct: 235 AERAFIGACLVAPEVRSAATEWLRPEDFASPDAAQTWRVVLDMTQRGDPVDFVLVAVEVE 294

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                     L+    D        E           + +      R+  R + E++  +
Sbjct: 295 TARAVAHAAGLELVGYDPSTLHRLAERGDQLGGHRAAEVIRRAALQRITHRARTELD-AV 353

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           A+  A G           + E      ++  Q A
Sbjct: 354 AENRAFGSRALLQNAQQTVSEAQQTSGRLSGQSA 387



 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 58/172 (33%), Gaps = 24/172 (13%)

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH----------QRLCE 543
            P  +++    L    +++   + ++  L     + +  + +++             +  
Sbjct: 26  EPGRIRDVSDWLESADFEHWAHRAIYQTLTGLIADGRPVVLQDLPGILARGEYHDAHVDS 85

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF---RLLSRQKEEI-- 598
            G G L            +  AT +    D     +     Y R      + RQ   +  
Sbjct: 86  TGSGPL--SAPALHTLLSMTPATPDRAHRDQGGTARSEHVRYARIVLDNSVRRQVAAVGA 143

Query: 599 -EKQIAQVTAKGEAEKTAILIS-ILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             +Q+ +  A+ + + +A  +   L EV   + ++E + A        +GR+
Sbjct: 144 RIEQLGRTAAQHDDQHSADPMGPALAEVRAALQRLEGRVAT-----SHAGRV 190


>gi|300724711|ref|YP_003714036.1| replicative DNA helicase; chromosome replication; chain elongation
           [Xenorhabdus nematophila ATCC 19061]
 gi|297631253|emb|CBJ91948.1| replicative DNA helicase; chromosome replication; chain elongation
           [Xenorhabdus nematophila ATCC 19061]
          Length = 459

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 45/154 (29%), Gaps = 10/154 (6%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 +   KL       E ++L  L+          + +    + +   ++++S +  
Sbjct: 3   EPKDRQVEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVTGNDFFSRPHRRIFSEMQR 62

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                K      + + L      EL  +LD     A L   +           Y   +  
Sbjct: 63  LLETGKPIDLITLSESL------ELNGELDNVGGFAYLAELSKNTPSAANINAYADIV-- 114

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
             R R + R    +  +IA      +   +  L+
Sbjct: 115 --RERAVVRDMIAVANEIADAGYDPQGRTSEELL 146


>gi|260586979|ref|ZP_05852892.1| putative toprim domain protein [Blautia hansenii DSM 20583]
 gi|260542663|gb|EEX23232.1| putative toprim domain protein [Blautia hansenii DSM 20583]
          Length = 635

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 15/114 (13%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            ++ ++ +     ++L   YV    R         +Y         +  S   N  K  +
Sbjct: 2   EEYTREQIQRADDTDL---YVFLSGRGEQFKRCGKEYRWL------RHDSVMIN--KNEW 50

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116
           Y FS +  G  + F+    G SF E+V+ L    G  +   + + +K++  +  
Sbjct: 51  YRFSQNKGGHAIDFMKEFYGLSFAEAVKELLGEEG--VGETNRRTDKEDAGRQK 102


>gi|225459089|ref|XP_002283825.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1293

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGEL 549
           + + ++ ++   EL ++   + +L++  + +          L     ++L E  +    L
Sbjct: 546 LEYTSLQEKFDMELKEL---DKKLEQKEAEMKRFASADTSVLKLHYEKKLLELEQEKKAL 602

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            K+++    D    S+T++     +++ Y Q L + ++     ++K++ + Q+ +   K 
Sbjct: 603 QKEIEELRHDLASISSTSDDGAQKLKEDYLQKLNVLEKQVSELKKKQDAQSQLLRQKQKS 662

Query: 610 EAEKTAILISILHEVHIQIHQIE 632
           + E    L   +  +  Q  Q++
Sbjct: 663 D-EAAKRLQDEIQRIKSQKVQLQ 684


>gi|213405729|ref|XP_002173636.1| myosin type-2 heavy chain 2 [Schizosaccharomyces japonicus yFS275]
 gi|212001683|gb|EEB07343.1| myosin type-2 heavy chain 2 [Schizosaccharomyces japonicus yFS275]
          Length = 1892

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 76/211 (36%), Gaps = 17/211 (8%)

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
             QK ++  +G+     +              MQ      +  +  +  E   +  L+ + 
Sbjct: 1452 LQKSLSLGAGFQHKNARARNGYQSIKAGVDPMQYKKELERSLQAMAKAER--IQNLVRNQ 1509

Query: 496  AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLKQL 553
              L++  + L + +    + Q+L+    +   E +      + +   L  +   +LL Q+
Sbjct: 1510 --LEDTEESLRENQKVCAKYQQLYLAAEAKLREVEDVIEEKDSLMAELQRQR-DKLLHQV 1566

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK--------EEIEKQIAQV 605
            +             E    ++ + YQ+ LAL KR   + R+K          + K+  ++
Sbjct: 1567 EDFYSTRTQDLEDREKQEQNIYERYQKELALLKRQAEVEREKNLELRNESRLLNKEFGEL 1626

Query: 606  TAKGEAEKTAI--LISILHEVHIQIHQIESQ 634
              K +    +   L+    E+  +I ++  Q
Sbjct: 1627 RVKMDEAVLSRSNLMRENTELQKEIKRLSRQ 1657


>gi|149692354|ref|XP_001500608.1| PREDICTED: similar to Cingulin-like protein 1 (Paracingulin)
            (Junction-associated coiled-coil protein) [Equus
            caballus]
          Length = 1297

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 88/279 (31%), Gaps = 12/279 (4%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y +    +L      L +   + E    +     +   L           +D+ 
Sbjct: 967  QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEA 1026

Query: 420  L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L  R    Q ++D   +L  K   +        +   +    +   +    +S +  +  
Sbjct: 1027 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEMELEEERSNSDLLSERI 1086

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-------QK 530
             +   +   +   L+   A+ Q+   +   +   N +L+     L   +         Q 
Sbjct: 1087 ARSREQMEQIRNELLQERAVRQDLECDKISLERQNKDLKSRIVHLEGSYRSSKEGLVVQM 1146

Query: 531  YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 E+  RL          QL  +  +  +     + +   +     Q   L  R + 
Sbjct: 1147 EARIAELEDRLESEERDRASLQLSNRRLERKVKELVMQVDDEHLSLT-DQKDQLSLRLKA 1205

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            + RQ EE E++I ++ +    +K    +    +V+ Q+ 
Sbjct: 1206 MKRQVEEAEEEIDRLESS--KKKLQRELEEQMDVNEQLQ 1242



 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 53/150 (35%), Gaps = 13/150 (8%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            E    L        E+ +L   L  +   Q+    E   +   +    EL  Q D +V 
Sbjct: 602 SEVKDLLEQKNKLTTEVAELQRQLQLEVKNQQNIKEE---RERMKANLEELQSQHDTKVE 658

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK----- 613
           +  +     E +  ++R+  ++   +         +  +++ Q++++  + ++ K     
Sbjct: 659 ENSVLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDR 718

Query: 614 -----TAILISILHEVHIQIHQIESQEAMI 638
                   L+    ++   +   E QE ++
Sbjct: 719 EKGVLIEELLQAKQDLQDLLIAKEEQEDLL 748



 Score = 37.9 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 39/331 (11%), Positives = 100/331 (30%), Gaps = 13/331 (3%)

Query: 306  QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
            ++R L      +    D            +   L       +   +     ED     R 
Sbjct: 694  EIRDLQDQLSEMHDELDSAKRSEDREKGVLIEELLQAKQDLQDLLIAKEEQEDLLR-KRE 752

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK--NCINHIKDQKLRYY 423
               TA +  + E +   D    +  E         R  +E   K    +    +   +  
Sbjct: 753  RELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQTQ 812

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                +R +  Q   + + +  G         + +             L+K   ++   L 
Sbjct: 813  VEAKVRMKALQEENERLRKSLGELECSVARLQRQIADAKGDEAKAKELLKKCEAEMQQLE 872

Query: 484  EAAL------LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            EA +         +     +  E      ++     E ++L   L  +  +++     + 
Sbjct: 873  EALVHARKEEKEAMSARRTLESELEDAQRNLSRATQEQKQLSEKLKDESEQKEQLRRLKN 932

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                      + +++L +++ D    S T+   + +    Y++     +    + RQ +E
Sbjct: 933  EMENERWHLDKTIEKLQKEMADIVEVSRTSTLELQNQLDEYKE--KNRRELAEMQRQLKE 990

Query: 598  --IEKQIAQVTAKGEAEKTAILISILHEVHI 626
              +E + +++TA    ++  ++   L +   
Sbjct: 991  KTLEAEKSRLTAMKMQDEMRLMEEELRDYQR 1021


>gi|46205184|ref|ZP_00048890.2| hypothetical protein Magn03002143 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 261

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 41  ACCPFHDEKTPSFHCNDS--KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
             CP    KT  F  +D   +G + C  C   GD       +LG  F E    LA   G 
Sbjct: 33  GPCPICGGKT-RFRYDDKEGRGTWICNHCGA-GDGADLAMKVLGIDFKE----LAERVGP 86

Query: 99  PLPVVDPKIEKKEKIQTD 116
            +  V P   KK++   D
Sbjct: 87  LIGEVKPTAPKKDRSHDD 104


>gi|116053810|ref|YP_788247.1| putative ClpA/B-type chaperone [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296386574|ref|ZP_06876073.1| putative ClpA/B-type chaperone [Pseudomonas aeruginosa PAb1]
 gi|115589031|gb|ABJ15046.1| putative ClpA/B-type chaperone [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 902

 Score = 47.2 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 43/141 (30%), Gaps = 26/141 (18%)

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L      +       +   + +      ++ L+ ++      SA   A     R      
Sbjct: 424 LLDTACARTAISLHAVPAEVDDS--RRRIEALETELAIIRRESAIGVATAERQRNAETLL 481

Query: 582 LALYKRFRLLSRQKEEIEKQ------------------------IAQVTAKGEAEKTAIL 617
               +R   L ++  E ++                         + +  A+ + E+   L
Sbjct: 482 AEERERLAALEQRWAEEKRLVDELLETRARLRAAAEAVDAGGAPLGEGEARLDEEQRQAL 541

Query: 618 ISILHEVHIQIHQIESQEAMI 638
            + L E+  Q+  ++ +E +I
Sbjct: 542 HARLAELQAQLSALQGEEPLI 562


>gi|145479823|ref|XP_001425934.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393006|emb|CAK58536.1| unnamed protein product [Paramecium tetraurelia]
          Length = 590

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/268 (8%), Positives = 85/268 (31%), Gaps = 14/268 (5%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
              S+        +E +         + E     +           +  Y + ++ + + 
Sbjct: 157 TNASMKSQYQSIMKENKRCQQQLGTSQNEFYKLSEKFNQFESMYHSKIKYYEELQKQFEL 216

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
             Q+   ++    R          Q     ++ Q    +     +    +  L       
Sbjct: 217 EQQREKFQYQELVRELHLLENENQQLYKQLQITQFEKEEKDKKIQDEQNQLKL------- 269

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG--FGELLKQ 552
              L +   E   +   +  L+     ++ +           + Q L ++     ++ ++
Sbjct: 270 --ELNKIQDENKILEKSHRTLKIEKKVIYDN-QNHIKQKINRLEQELNQKEQIIKQMEQE 326

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE-- 610
           L  ++                  +G +       +++ L ++ +++E+QIA++    +  
Sbjct: 327 LQEKILIINQLENIAYGLKQSAEEGKENTNQTLLQYKDLMKECDQLEQQIARLEQDNDIV 386

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMI 638
            ++   ++  L ++  +  Q++ + A++
Sbjct: 387 KKEYEQILYELKDLQQENRQLQERNALL 414


>gi|158520023|ref|YP_001527893.1| replicative DNA helicase [Desulfococcus oleovorans Hxd3]
 gi|158508849|gb|ABW65816.1| replicative DNA helicase [Desulfococcus oleovorans Hxd3]
          Length = 471

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 56/185 (30%), Gaps = 16/185 (8%)

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQELA 506
                 +    K  +   + S  +  +L  +    E ++L T++  P    L +  + LA
Sbjct: 2   EKAAPKKKGRPKAGAAGAVPSDPLLHRLPPQNIEAEESILSTILIDPDPSTLFDVLEVLA 61

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
              +  +  QK+++ +     + +      +   L E        +L+     A L    
Sbjct: 62  PEDFYKSAHQKIFAAIVRLVEKNEPVDLVTVKNTLAES------DELEPIGGAAYLAGLV 115

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISIL 621
             A      + Y   +   K    L R  E   +   +        +G  +     I  +
Sbjct: 116 DSAPYAANARHYADII---KNKASLRRMIENANEISRRCFDNPSDVEGVIDFAERAILEV 172

Query: 622 HEVHI 626
            E   
Sbjct: 173 AEQKA 177


>gi|268567159|ref|XP_002639906.1| Hypothetical protein CBG08234 [Caenorhabditis briggsae]
 gi|187032804|emb|CAP28100.1| hypothetical protein CBG_08234 [Caenorhabditis briggsae AF16]
          Length = 2147

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/189 (10%), Positives = 57/189 (30%), Gaps = 17/189 (8%)

Query: 454  ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
                    P      S+ +  K  K+    E  ++  L        E  +        ++
Sbjct: 1691 PNVPVPNVPDAHSDGSTQIDHKELKQMWDLERQVIRHLKRENITFDEFIE--------SD 1742

Query: 514  ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ-LDRQVRDAGLWSATTEANIV 572
            + + +  FL   F          I ++  +    +  ++ L  +           E+   
Sbjct: 1743 DARNMHQFLVDTFKNMDLQYFAFILEKAIQETHEQSWQETLQLRQAAEEARLLLEESRKQ 1802

Query: 573  DVRQ--GYQQALALYKRFRLLS------RQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             +R+    ++ +    RF           + + ++++I Q+    E      +      +
Sbjct: 1803 HLREYGELRERMETISRFEAFEVQVACDSRIKSLKERITQLNEDRELLLREEVKEERARL 1862

Query: 625  HIQIHQIES 633
              Q+ +++ 
Sbjct: 1863 QRQLKEMKE 1871


>gi|326335376|ref|ZP_08201564.1| DNA primase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692441|gb|EGD34392.1| DNA primase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 291

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 9/198 (4%)

Query: 13  IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKG 71
             I I N++  +      K N+    Y+A   F  +EK PS   N  K   + F    K 
Sbjct: 8   TQISIRNVLESF-SLFPSKGNSKTAFYFA---FDREEKAPSLLVNFIKNIAFDFGTGKKY 63

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHS 131
           D +S +  +  CS  E+++ L+             + K E     L  + EV  +     
Sbjct: 64  DIVSLVQGIKLCSVSEALEYLSQ-FDFSFNEQICNVTKDENKYEIL-SISEVKHNALIQY 121

Query: 132 LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191
           LK  R +   + L E        + F +G+   +     E   +         +   + +
Sbjct: 122 LKERRIENNIHLLKEIHYKISDKKYFGIGF--KNDTGGYEVRNKYSKICIGRKDITTIKN 179

Query: 192 GDNSATSYDRFRNRLIFP 209
             N+   ++ F + L F 
Sbjct: 180 KSNNLRIFEGFMDYLSFI 197


>gi|312863336|ref|ZP_07723574.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
 gi|311100872|gb|EFQ59077.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
          Length = 362

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 8  IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
          I+ +     I ++ G                Y    P HD    SF        +  FS 
Sbjct: 4  IEAVKHKA-ILDVAGS---LGYSFRRLSGQVYEH--PEHD----SFKIFADTNTFKWFSR 53

Query: 68 HVKGDHLSFLSALLGCSFIESVQRL 92
           ++GD + F+  + G SF E++  L
Sbjct: 54 DIQGDVIDFVQLVAGVSFKEALSYL 78


>gi|296193859|ref|XP_002744704.1| PREDICTED: centrosomal protein of 120 kDa isoform 1 [Callithrix
           jacchus]
          Length = 986

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 645 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 702

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++     S      ++    + ++  + + +Q S+ + K   
Sbjct: 703 AEYTILEGKLQKTLIDLEKREQQLASAESELQREKKELQSERQRNLQELQDSIRRAKEDC 762

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   +  L           Q+L D       L+K +         +     +  
Sbjct: 763 IHQVELERLKIKQLEEDK---HRLQQQLNDAETKYKILEKEFQQFKDQQSNKPEIRLQSE 819

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 820 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 876

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+   +  A  E +        L ++  +++++  QE
Sbjct: 877 LEQMRLRYLAAEEKDTVKTEQQELLDIRNELNRLRQQE 914


>gi|161505147|ref|YP_001572259.1| hypothetical protein SARI_03284 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866494|gb|ABX23117.1| hypothetical protein SARI_03284 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 1100

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 72/220 (32%), Gaps = 19/220 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
                 E     +  ++    +  +      +QS+L   +  K    R       + N P
Sbjct: 10  LAATAPEVKQITQELEQAKAAKPPQPEVVEALQSALNALEERKGSLERAKQYQYVIDNFP 69

Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +   L+ Q   L D           + L   +     +      E   ++   R   + 
Sbjct: 70  KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERAREIADS 129

Query: 550 LKQLDRQVRDAGLWSATTE----ANIVDVRQGYQQALALYKRFRLLSRQKEEIE------ 599
           L QL +Q  DA       E    A          Q L++      L    +E+E      
Sbjct: 130 LSQLPQQQNDARRQLNVIERRLGAAGGSASLSLAQNLSMQAESAKLKALVDELELAQLSA 189

Query: 600 ---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +++A++ ++   +++  L + L  +  Q++ +  +EA
Sbjct: 190 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 229


>gi|153971637|ref|YP_001393155.1| putative conjugative transfer protein TraI [Vibrio vulnificus]
 gi|152955138|emb|CAL25489.1| putative conjugative transfer protein TraI [Vibrio vulnificus]
          Length = 1924

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/363 (11%), Positives = 93/363 (25%), Gaps = 23/363 (6%)

Query: 59   KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
            +G++  ++   KG  ++ + +  G S+ E++      A   L   +    ++      L 
Sbjct: 1585 RGYFKDYTTGEKGSLINLMMSHNGMSYKEAM----NEAHKMLNEPEKYKLEENSKHEKL- 1639

Query: 119  RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
                         L         +    +   S +  +               ++     
Sbjct: 1640 -------------LSTTPRHIAKFEERAKEYISQSQPINNTLAQTYLNNLGINNIENDNV 1686

Query: 179  SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
                 + +        +  +    +      I  +          TL          S +
Sbjct: 1687 KFHPSVYSSEDKAYHPAMLTNIHNKQGETKAIEVTYLDSQGNRDNTLDINPRTLGTKSKQ 1746

Query: 239  TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
               FH+G+NL N       ++ S     +      II V    D+ ++    ++  +  +
Sbjct: 1747 LTNFHQGENL-NTTIISTSIENSFLIRDQTQGQIDIINVNHKNDIQNINIDELRQNIIIV 1805

Query: 299  GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
                             +I+  F+G D    +     + +   +    R N V      D
Sbjct: 1806 LNQGNHDLNP---NNIEKIIENFNGRDIQFMSDDNLKEDIKSCIEKLERDNSVHDIELSD 1862

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
              S  +            +       L   ET+  S          E         I  +
Sbjct: 1863 THSTHQESELD-TLNFDEKKETDSQSLEHFETKEYSPQQEMNFEHQEKESDWEDREIDRE 1921

Query: 419  KLR 421
              R
Sbjct: 1922 LER 1924


>gi|254243199|ref|ZP_04936521.1| hypothetical protein PA2G_04002 [Pseudomonas aeruginosa 2192]
 gi|126196577|gb|EAZ60640.1| hypothetical protein PA2G_04002 [Pseudomonas aeruginosa 2192]
          Length = 902

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 43/141 (30%), Gaps = 26/141 (18%)

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L      +       +   + +      ++ L+ ++      SA   A     R      
Sbjct: 424 LLDTACARTAISLHAVPAEVDDS--RRRIEALETELAIIRRESAIGVATAERQRNAETLL 481

Query: 582 LALYKRFRLLSRQKEEIEKQ------------------------IAQVTAKGEAEKTAIL 617
               +R   L ++  E ++                         + +  A+ + E+   L
Sbjct: 482 AEERERLAALEQRWAEEKRLVDELLETRARLRAAAEAVDAGGVPLGEGEARLDEEQRQAL 541

Query: 618 ISILHEVHIQIHQIESQEAMI 638
            + L E+  Q+  ++ +E +I
Sbjct: 542 HARLAELQAQLSALQGEEPLI 562


>gi|326917541|ref|XP_003205057.1| PREDICTED: transcription initiation factor TFIID subunit 4B-like
           [Meleagris gallopavo]
          Length = 750

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 55/157 (35%), Gaps = 14/157 (8%)

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK----YFLPEEIHQRLCERG 545
            L  +  ++    +  AD  +  +E   L   + +                +     +  
Sbjct: 517 ILATNSELIGTVIRSCADEPFLFSE--ALQKKILNIGKRHDIMELNSDVVNLISHATQER 574

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ---I 602
              LL++L    +        ++  I  V    +  L   ++   L +++++ E++   +
Sbjct: 575 LRGLLEKLTVIAQHRVSTHKGSDTYI--VSSDTRAQLKFLEKLDHLEKRRKDEEEREMLL 632

Query: 603 AQVTAKGEAE--KTAILISILHEVHI-QIHQIESQEA 636
               ++   E  +   L   + E+   ++ Q++ +EA
Sbjct: 633 RAAKSRSNKEDPEHLRLKQKVKEMQQLELAQMQQREA 669


>gi|322437298|ref|YP_004219510.1| replicative DNA helicase [Acidobacterium sp. MP5ACTX9]
 gi|321165025|gb|ADW70730.1| replicative DNA helicase [Acidobacterium sp. MP5ACTX9]
          Length = 462

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 60/175 (34%), Gaps = 15/175 (8%)

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
             +          E  +L  ++  P  + +    L    +  +  +K++  +        
Sbjct: 9   NPEDDSRPASLHAEQTILGAMLVEPLAIVDATMLLKADDFSLDSHRKIYEVMIHLSEVGY 68

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 + + L +R      KQLD       L   +         + Y + +    R + 
Sbjct: 69  AVDIVTVSEELSKR------KQLDSVGSRPYLAGLSEGLPRKLSIESYVRIV----RDKS 118

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           L RQ       +        ++++   I +L++V  ++ +I S+ A+  GF  +S
Sbjct: 119 LMRQLMS----VCDAGMMEASDQSLEAIDVLNQVESRLMEI-SEHAITGGFSGIS 168


>gi|238918280|ref|YP_002931794.1| replicative DNA helicase, [Edwardsiella ictaluri 93-146]
 gi|238867848|gb|ACR67559.1| replicative DNA helicase, putative [Edwardsiella ictaluri 93-146]
          Length = 456

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 6/115 (5%)

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E A+L  L+       E    LA   +     + ++  +   F          +
Sbjct: 7   PHSAEAEQAVLGGLMLDNDRWDEVVLLLAPDDFFVGWHRAIYRAMAELFGASLPLDLITL 66

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             R+   G   LL+++      A L   T  A        Y   +A   R R L 
Sbjct: 67  SDRMENAG---LLERVGGFAYLAELSKNTPSAA---NILAYAGVVAEKSRLRKLQ 115


>gi|220914616|ref|YP_002489925.1| replicative DNA helicase [Arthrobacter chlorophenolicus A6]
 gi|219861494|gb|ACL41836.1| replicative DNA helicase [Arthrobacter chlorophenolicus A6]
          Length = 461

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/161 (8%), Positives = 45/161 (27%), Gaps = 13/161 (8%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
             +   +    E ++L  ++     + +  + L    +     + ++  +   +   +  
Sbjct: 17  ASRKPPQDIPAEQSVLGGMMLSKDAIADVVEILRGQDFYRPAHETIYEAIIDLYGRGEPA 76

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               +   L +      + ++        L      A       GY   +      R + 
Sbjct: 77  DAVTVSDELTK---RAEINRIGGPAYLHELIQTVPTA----ANAGYYAEIVA---ERAVL 126

Query: 593 RQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIHQ 630
           R+      +I Q+    +    +      + ++ V  +   
Sbjct: 127 RRLVNAGTKIVQLGYGSDGEVEDLVNQAQAEVYAVAERRTA 167


>gi|27468396|ref|NP_765033.1| LtrC-like protein [Staphylococcus epidermidis ATCC 12228]
 gi|27315943|gb|AAO05077.1|AE016749_23 LtrC-like protein [Staphylococcus epidermidis ATCC 12228]
          Length = 778

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 15/92 (16%)

Query: 3   YPRDFIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
              + +++      I ++  +  Y  + +     +  +       HD    S   N +K 
Sbjct: 457 ISEEQLENAKNK-SILDVASECGY-SFRKSGKYYIGNE-------HD----SLVLNANKN 503

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
            Y  +S    G+ ++F+    G  FI++V+ L
Sbjct: 504 TYNWYSKQEYGNTINFIQNEKGLDFIDAVKYL 535



 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 46/431 (10%), Positives = 111/431 (25%), Gaps = 82/431 (19%)

Query: 9   KDLL--IHIPISNL-IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
            ++     I I  L I +  +  +   N             D        N  K  YY  
Sbjct: 360 DEIKKASQIDIVKLAIHEGYNPKKVGKNFYIDK--------DNHH--LTFNSEKNTYYD- 408

Query: 66  SCHV---KGDHLSFLSALLGCSFIESVQRL------AAIAGVPLPVVDPKIEKKEKIQTD 116
                   G+ + F       SF+ +V+ L      A    + +      I +++     
Sbjct: 409 --KENKLGGNPIVFFRNQKNTSFVSTVKYLNELSEDATFNNIEVEQNKLPISEEQLENAK 466

Query: 117 LIRLIEVAT----------DFF----HHSLKNARDKRLHYYLDERGI------------- 149
              +++VA+           ++    H SL    +K  + +  ++               
Sbjct: 467 NKSILDVASECGYSFRKSGKYYIGNEHDSLVLNANKNTYNWYSKQEYGNTINFIQNEKGL 526

Query: 150 ---------DSHAIEMFKLGYAPDSRYSLREHLRQKGFS--------EEKIIEAGLLIDG 192
                    ++   ++           S +   ++K            ++++   L+   
Sbjct: 527 DFIDAVKYLNNEEFQVANFKEEKVVYDSSKYKYKEKEDMAVSRDYLINKRMLNEDLVNQL 586

Query: 193 DNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFF 252
                  +     + F  ++  G+++    R   K          +       K+ +NF 
Sbjct: 587 IEQDYIKEDKMKNVCFQWKNQDGEIVGSDKRGTGKTPFRGIDKGSD------IKHAFNFS 640

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
                  K I        +     +    D + +   G++        A    +      
Sbjct: 641 TTEKP--KDIYIFEAPIDALSYRTLNQDKDGIYMSMNGLKQDAVRYQIAFYMKRYE---T 695

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCH--LIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
               + LC D D+ G +       L+                    +D +  +  +    
Sbjct: 696 DPESVHLCVDNDEAGNKFINNFQGLISNQSGKEINIVPEQPKEDGCKDWNDVLVNHVYKE 755

Query: 371 FEKLIVESLPL 381
            ++        
Sbjct: 756 KDRNFNAKKTN 766


>gi|313112352|ref|ZP_07798116.1| putative ClpA/B-type chaperone [Pseudomonas aeruginosa 39016]
 gi|310884618|gb|EFQ43212.1| putative ClpA/B-type chaperone [Pseudomonas aeruginosa 39016]
          Length = 902

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 43/141 (30%), Gaps = 26/141 (18%)

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L      +       +   + +      ++ L+ ++      SA   A     R      
Sbjct: 424 LLDTACARTAISLHAVPAEVDDS--RRRIEALETELAIIRRESAIGVATAERQRNAETLL 481

Query: 582 LALYKRFRLLSRQKEEIEKQ------------------------IAQVTAKGEAEKTAIL 617
               +R   L ++  E ++                         + +  A+ + E+   L
Sbjct: 482 AEERERLAALEQRWAEEKRLVDELLETRARLRAAAEAVDAGGAPLGEGEARLDEEQRQAL 541

Query: 618 ISILHEVHIQIHQIESQEAMI 638
            + L E+  Q+  ++ +E +I
Sbjct: 542 HARLAELQAQLSALQGEEPLI 562


>gi|305433109|ref|ZP_07402265.1| replicative DNA helicase DnaB [Campylobacter coli JV20]
 gi|304443810|gb|EFM36467.1| replicative DNA helicase DnaB [Campylobacter coli JV20]
          Length = 457

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 50/158 (31%), Gaps = 9/158 (5%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L + I           ++    +     Q ++  + +     +      + +   
Sbjct: 10  LERAILSSCIMSEDAYSSIAGDIEPKDFSLKAHQDVFKAIIACVNAGEPISISFLKKH-- 67

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           ++   ++L ++        L +   E     +++       L       +R   EI  +I
Sbjct: 68  KKIDEQILTEIIATPSIIDLPAYVNELREKSIKRQLLSFAHLLPTRINDNRAVSEISDEI 127

Query: 603 AQV-------TAKGEAEKTAILISILHEVHIQIHQIES 633
            +            + +   I++S L E   +   +E+
Sbjct: 128 GKEIFNITNRVNTNDIKDIEIVLSELLEEFKKQKSLEN 165


>gi|302142065|emb|CBI19268.3| unnamed protein product [Vitis vinifera]
          Length = 1279

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGEL 549
           + + ++ ++   EL ++   + +L++  + +          L     ++L E  +    L
Sbjct: 569 LEYTSLQEKFDMELKEL---DKKLEQKEAEMKRFASADTSVLKLHYEKKLLELEQEKKAL 625

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            K+++    D    S+T++     +++ Y Q L + ++     ++K++ + Q+ +   K 
Sbjct: 626 QKEIEELRHDLASISSTSDDGAQKLKEDYLQKLNVLEKQVSELKKKQDAQSQLLRQKQKS 685

Query: 610 EAEKTAILISILHEVHIQIHQIE 632
           + E    L   +  +  Q  Q++
Sbjct: 686 D-EAAKRLQDEIQRIKSQKVQLQ 707


>gi|260599491|ref|YP_003212062.1| putative mechanosensitive channel protein [Cronobacter turicensis
           z3032]
 gi|260218668|emb|CBA34008.1| Uncharacterized mscS family protein yjeP [Cronobacter turicensis
           z3032]
          Length = 1110

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 80/221 (36%), Gaps = 26/221 (11%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            +             KN   + Q   + +  Q++L + K S + + +   ++    N P 
Sbjct: 24  DEKQIAQELEQAKAAKNQPDQAQVVEALQSAQNALEERKASLERAKQYQQVID---NFPK 80

Query: 497 ILQEQYQELADIRYDNNELQ--------KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           + Q   Q+L ++   +   +         L   +     +      E   ++   R   +
Sbjct: 81  LSQSLRQQLNNL--RDEPRRVPTGLTTDALNQEILQVSSQLLEKSREAQQEQDRAREIAD 138

Query: 549 LLKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI- 598
            L QL +Q  DA       E         + +   +   QQA +   + R+   +  ++ 
Sbjct: 139 SLSQLPQQQTDARRQLNDMERRAGAPTGSSALGAAQLLSQQAESAQLKARVDELELAQLS 198

Query: 599 ---EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +++A++ A+   +++  L + L  +  Q++    QEA
Sbjct: 199 ASNRQELARLRAELAQKQSEQLDAYLQALRNQLNSQRQQEA 239


>gi|322385174|ref|ZP_08058821.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus cristatus ATCC 51100]
 gi|321270798|gb|EFX53711.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus cristatus ATCC 51100]
          Length = 631

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+L++   Q        A    +    ++  ++   L +R   L  Q E+++ QI 
Sbjct: 532 KAEQEILREEAEQASPDNPAPAN---DYQLQKENQKEQRRLARRLEQLEAQIEDLDSQIN 588

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
           Q+       +     + L E   QI Q+ +  +EAM+E
Sbjct: 589 QLQEAM---QATNDAAELMESQQQIDQLTAAQEEAMLE 623


>gi|237729095|ref|ZP_04559576.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908824|gb|EEH94742.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 1104

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 75/219 (34%), Gaps = 20/219 (9%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
                   + +      K     + +   + +   ++L + K S + + +   ++    N
Sbjct: 19  AATAPDAKQLTQELEQAKAAKPAQPETVEALQSALNALEERKGSLERAQQYQQVID---N 75

Query: 494 HPAILQEQYQELADIRYDNNEL-------QKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            P +      +L+++R D             L   +     +      +   ++   R  
Sbjct: 76  FPKLSATLRAQLSNLR-DEPRNVPTGLTTDALNQEILQVSSQLLEKSRQAQQEQDRAREI 134

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE------- 599
            + L QL +Q  DA       E  I        Q  A+      L  Q +E+E       
Sbjct: 135 ADSLSQLPQQQTDARRQLNELERRIGTANGNSAQNQAMQAESAKLKAQVDELELAQLSAN 194

Query: 600 --KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             +++A++ ++   +++  L + L  +  Q++    +EA
Sbjct: 195 NRQELARMRSELAEKQSQQLDAYLQALRNQLNSQRQREA 233


>gi|323650981|ref|YP_004243624.1| bacteriophage related protein [Bacillus subtilis subsp. natto]
 gi|323461621|dbj|BAJ77037.1| bacteriophage related protein [Bacillus subtilis subsp. natto]
          Length = 346

 Score = 46.8 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 104/363 (28%), Gaps = 57/363 (15%)

Query: 28  DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS-CHVKGDHLSFLSALLGCSFI 86
             + +N +       C  H+  +       +   +YCF+ C    D    +  + G +F 
Sbjct: 27  KLKGSNIIC---KTIC--HNGHSHKLTYYSNSHSFYCFTECG-HMDLYGLIGKIKGLTFF 80

Query: 87  ESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDE 146
           ES + +    G+          K    + D+         FF       +D      L +
Sbjct: 81  ESFKFVCQRFGL-----SYGNSKYGSDKVDM--------SFFEK--FEPKDMAAEIKLLD 125

Query: 147 RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRL 206
           + I     + +   +  D+                                 Y    N++
Sbjct: 126 KKILDSYYDYYHKSWIEDNIS---------------------PKTMKKFNIKYSVLDNQI 164

Query: 207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDV 266
           I P    +G ++    R L++             +F+K + L +  GA   L        
Sbjct: 165 IIPHYDLQGNLVGVRARNLNQELVNSGKKY--MPVFYKNRFLKHPTGA--CLYGLNFNLE 220

Query: 267 RRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLS---PRIVLCFDG 323
           +      IIL E    V+ +        ++   +  T    +L         R+++  D 
Sbjct: 221 QITDYGAIILCESEKSVMQIDTMFPDMSIAVALSGSTLTDTQLEIINDLGIERVIIALDK 280

Query: 324 DDPGLRAAYKAIDLVL----CHLIPGNRVNFVLLSRGE---DPDSFIRCYGKTAFEKLIV 376
           +   + +  +   +           G+R    ++   E   D        G   F KL  
Sbjct: 281 EFTEVGSIEEKYYIEKINSVFINKLGSRFETSVMWDVEGLLDLKDSPSDKGPETFMKLFH 340

Query: 377 ESL 379
             +
Sbjct: 341 NRI 343


>gi|301059184|ref|ZP_07200123.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300446713|gb|EFK10539.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 345

 Score = 46.8 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 31  KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80
           K +    + W   PF H+EK  S H + S+  +  FS    G  + F   +
Sbjct: 123 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREM 172


>gi|269127176|ref|YP_003300546.1| ATPase AAA-2 domain-containing protein [Thermomonospora curvata DSM
           43183]
 gi|268312134|gb|ACY98508.1| ATPase AAA-2 domain protein [Thermomonospora curvata DSM 43183]
          Length = 842

 Score = 46.8 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 62/213 (29%), Gaps = 16/213 (7%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y     +RL++L  +          +  +        G    +   +++K  L++     
Sbjct: 280 YRGDFEERLRKLIDEIRDNSEHLVIFIDELHTAVTAGGGEGAMTAGNMLKPPLARG---- 335

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRL 541
           E  ++         + E  + +      +   ++ +  +      VE    +   +  R 
Sbjct: 336 ELHVIGA-----TTIDEYRKHIEK----DPAFERRFQPILVPEPSVEDSVEILRGLRDRY 386

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSRQKEEIEK 600
                     +      +      T              A   +  R R   R   ++++
Sbjct: 387 EAHHQVRFSDEALVAAVELADRYLTDRFLPDKAIDLIDHAGARVRLRTRTPGRDVRDLDR 446

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           QI QV  + +            ++  Q++++E 
Sbjct: 447 QIEQVRREKDQAVAEENYDRAKKLREQLNELER 479


>gi|303232394|ref|ZP_07319086.1| ATP-dependent chaperone protein ClpB [Atopobium vaginae PB189-T1-4]
 gi|302481478|gb|EFL44546.1| ATP-dependent chaperone protein ClpB [Atopobium vaginae PB189-T1-4]
          Length = 974

 Score = 46.8 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 50/135 (37%), Gaps = 4/135 (2%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-GELLKQLDRQVRDAGLWSA 565
            I   +    +L   L S   +      +    ++ E+    E       ++       A
Sbjct: 433 AIDLVDEAASQLRMELDSMPADIDAQTRQLTQMQIEEQALMKEDDAASKERLAALQQEIA 492

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHEV 624
            T+  +   R  +Q         + L R  E+ + Q+ + T +G+ +  + L  + + E+
Sbjct: 493 QTKEKLDAARATWQNEKRAIDAVQELKRAVEDAKAQMEKATREGDLQTASELRYAKIPEL 552

Query: 625 HIQIHQIESQEAMIE 639
             +     +++A++E
Sbjct: 553 QKKYQA--AEDALVE 565


>gi|302842080|ref|XP_002952584.1| hypothetical protein VOLCADRAFT_105563 [Volvox carteri f.
           nagariensis]
 gi|300262223|gb|EFJ46431.1| hypothetical protein VOLCADRAFT_105563 [Volvox carteri f.
           nagariensis]
          Length = 1048

 Score = 46.8 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 87/271 (32%), Gaps = 17/271 (6%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           E ++ + L   +  W+R     S              +   N  +  +      +   D 
Sbjct: 597 ESVLAQKLRQAEACWQRLVALYSKQKARLGRRCTEMQRMQENQARQAEQFRLQLRRQADE 656

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           LQ L            R  ++ AR R+Q      L Q +  K  L ++ +  E  +    
Sbjct: 657 LQALQAAVALAEEAQTRSQEEVARQREQ---VSELQQVAAAKAALEQRAAAAEQEV---- 709

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
                + ++      +++      ++L   +     E +    +E  +    +   + L+
Sbjct: 710 ---DWLRRQLAATKQELQQSEEARRRLKQEMLDQAEEFQQRQAQERSEA--RQRHEQELQ 764

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           Q +   +         EA      Q  QQA A  +R     ++ ++ E    +   + + 
Sbjct: 765 QAEAARQRHEQELQQAEAARQRHEQELQQAEAARQRH---EQELQQAEAARQRHEQELQQ 821

Query: 612 EKT--AILISILHEVHIQIHQIESQEAMIEG 640
            +      +  L E+  Q+     + A + G
Sbjct: 822 AEALRRRHVQELQEIARQLEDARREVADLRG 852


>gi|171678847|ref|XP_001904372.1| hypothetical protein [Podospora anserina S mat+]
 gi|170937494|emb|CAP62151.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1520

 Score = 46.8 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/342 (9%), Positives = 86/342 (25%), Gaps = 40/342 (11%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           D D          +   +   +                    +       + L   +   
Sbjct: 514 DEDAHDREEELIYLREQMEEYVTEIERLRNENLN----REAEKRKMAELIKTLGERAGER 569

Query: 382 VDMLWKR-ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
           +     R E  +   +  ++              ++D+  R    Q +  ++        
Sbjct: 570 MGENLGRQEEADVWKDLLEQETARREQSDEDNRRLRDEVFR--LKQEMAQQMGLPTSSSS 627

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
           + H          A        S + M ++            RE+  L     +  + +E
Sbjct: 628 SFHHSRRHAPFSPAARPPTASFSSQDMDNATTVSVTLVDDLRRESEQLRH--ENAELRRE 685

Query: 501 QYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
              + + +   N E ++L+  +        +    P  I   L        + +      
Sbjct: 686 VGAQTSMLTSRNREKERLYQEIEDLKMAQRRGGPAPSTIDSLLERSASRAGVHERSHSRI 745

Query: 559 DAGLWSATTEANIVDVRQGYQQAL----ALYKRFRLLSRQK-----------------EE 597
             G  +   + +  ++ +   +       L  + + L R+                  EE
Sbjct: 746 SGGATTVLDDLDRDELEEKLAELRDKNNELKLQNQDLQRELDACMEDFETAVEAKKQAEE 805

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +   + +             ++ L  +  +  +   + A +E
Sbjct: 806 LVAALQED--------IDAAMNDLMALQAERDEALQEHANLE 839


>gi|121998001|ref|YP_001002788.1| Fis family transcriptional regulator [Halorhodospira halophila SL1]
 gi|121589406|gb|ABM61986.1| transcriptional regulator, Fis family [Halorhodospira halophila
           SL1]
          Length = 382

 Score = 46.8 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 76/239 (31%), Gaps = 25/239 (10%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           +R ++  +    +          +   RD+   +   ++  + +     +    E A   
Sbjct: 29  EREREQLEALRDDLEAIQEDLAADRAARDEVEEALSQLERQVSEATRELERLRAERAEAR 88

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
             +    + ++  +E   +       + L   + + +V         +  +    G   L
Sbjct: 89  GRVA--ELREDYAEEAERLG---RHRETLAEQIVAAYVSGGDDPLRLLLNQQDPAGAQRL 143

Query: 550 L------------------KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
           L                   +L+                        ++  +L ++    
Sbjct: 144 LVYHDYFNEARAGHIEAAMAELESLAALREELREELAELERLEEATREERESLAEQRAER 203

Query: 592 SRQKEEIEKQIAQ--VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             ++EE+E +IA+    A+    + A   ++L ++  ++  +  + A +E FG+  G L
Sbjct: 204 DARREELEARIAERDAEAESLEAEVAEQEALLEDLRQRLADVPDEAAEVEAFGESRGNL 262


>gi|301765984|ref|XP_002918412.1| PREDICTED: disks large homolog 5-like [Ailuropoda melanoleuca]
 gi|281340310|gb|EFB15894.1| hypothetical protein PANDA_006865 [Ailuropoda melanoleuca]
          Length = 1917

 Score = 46.8 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/331 (10%), Positives = 92/331 (27%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +L       +     
Sbjct: 303 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNSDLSRLEQLEEENRRLLKQTEMLTQQRDTA 362

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  RC       +L   +    D+ W+ E                      
Sbjct: 363 IQLQHQCALSLRRCEAIH--HELNKATAQNKDLQWEMELLQSELTELRTAQAKMAKESEK 420

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
               +D      Y   + +R Q + +    +        K  +   ++K  S+ +     
Sbjct: 421 YKEERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAASEEMEALRQ 479

Query: 472 VK--GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +K    +    + +EA LL                         + + L   L     E 
Sbjct: 480 IKDTVTMDAGRANKEAELLR-----------------------KQCKALCQELKEALQEA 516

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 517 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 573

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+   +   +  +   L++ 
Sbjct: 574 DVSRELKELKEQME--SQLEKEARFRQLMAH 602


>gi|255717242|ref|XP_002554902.1| KLTH0F16500p [Lachancea thermotolerans]
 gi|238936285|emb|CAR24465.1| KLTH0F16500p [Lachancea thermotolerans]
          Length = 838

 Score = 46.8 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 86/303 (28%), Gaps = 21/303 (6%)

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
           +L   +     + +        D +   R   K     L  +     + + + +    S 
Sbjct: 172 ELKKAYRSLQLKFDQSEHKDQADLEQDARSNEKE-MRSLQKKLQEYQEQVTQSKKLVESL 230

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYY---YSQAIRDRLQQLFQKYITEHSGYGRYWKK 452
                 +             K   L+         +  + ++L        +      K 
Sbjct: 231 ENKLGNSASGSKEIKEQFEHKSSLLQERIDKLESELAAKDKELEINRNEIKNLQNDLQKA 290

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
           N           +     +       K ++RE      L+                    
Sbjct: 291 NHDSSSLADQKLQTRSKEIENLNNRLKSAVREREAAEHLLKE----------------SQ 334

Query: 513 NELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
           N L+ L + L +   E  +      + +   ER   E L++   Q       + + E N 
Sbjct: 335 NALRSLRAELSTLRQESDRKLDDLSVAKEKSERVLKERLEERTSQSERLQQRANSLEQNA 394

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            ++    Q      K     +R+ +++ ++I  +    ++EK       L  +  +I +I
Sbjct: 395 AELSSRLQLRDQRIKALEDEARELQKMNQRIQDLNDGKDSEKLQAQNQKLDGLRSEIERI 454

Query: 632 ESQ 634
           +++
Sbjct: 455 KNE 457


>gi|168064385|ref|XP_001784143.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664343|gb|EDQ51067.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1042

 Score = 46.8 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/287 (12%), Positives = 92/287 (32%), Gaps = 25/287 (8%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            +   +     A +  I++              ++      E +E     +  +N  + +
Sbjct: 518 VNDAKKSSESAATQHAIMQKRITTLEERHTTITSQMDEIKKEASEWRSKYEQLLNEHRME 577

Query: 419 KLRYYYSQAI-RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           + R      +  +R      +            ++    R +    +   ++++ +  +S
Sbjct: 578 QERSAAENKLVLNRCTISETRLAAMREQLEASKEEATEWRHKYETVEADTKAAIERANVS 637

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           K  +L++A L        A+  +     A +   + E++ L S       E+       +
Sbjct: 638 KDRALKQAQL-----REDALRADFA---AAVALKDGEIKDLHSK-----FERGERQIAIL 684

Query: 538 HQRLCERG--FGELLKQLDRQVRDAGLWSATTEAN-------IVDVRQGYQQALALYKRF 588
             RL E+       +++L     +        E           D+    Q  +   +R 
Sbjct: 685 SSRLHEQEVKLTGQIEELMTLKTELQHSHTELETKTSTIVTLQKDLETACQDKVHAEQRM 744

Query: 589 RLLSRQKEEIEK--QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             + ++ EE E+  +IA+   K  +E      + L  +  +  + + 
Sbjct: 745 AEVMKRMEETERLWKIAEKREKYASEAVEKARNELSAIQREKSESQR 791


>gi|121997450|ref|YP_001002237.1| DnaB domain-containing protein [Halorhodospira halophila SL1]
 gi|121588855|gb|ABM61435.1| DnaB domain protein helicase, C-terminal domain protein
           [Halorhodospira halophila SL1]
          Length = 1098

 Score = 46.8 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 46/160 (28%), Gaps = 6/160 (3%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
            S     K+       E A+L  L+   A   +    L +  +   E + ++  +     
Sbjct: 7   ASDSEALKVPPHDLEAEQAVLGGLMLDNAAWDQVADRLHEEDFYRREHRLVYRAMGELAE 66

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                    +   L ++G      +L+     + L     E       + Y   +     
Sbjct: 67  GNHPMDVVTLSGWLRQQG------KLEEAGGLSYLGGIARETPSAANIRAYADIVRERSV 120

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            R L R   ++ +   +   +   +        + ++  Q
Sbjct: 121 LRQLIRAGSDVAEAAFRPQGRNSEDLLDYAEQTIFQIAEQ 160


>gi|148679034|gb|EDL10981.1| hook homolog 2 (Drosophila), isoform CRA_b [Mus musculus]
          Length = 666

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + R RL +L +          R      R R  +   +R            ++    +
Sbjct: 349 LNSCRRRLGELQELRRQVRQLEERNAGHAERTRQLEEELRRAGSLRAQLEAQRRQVQELQ 408

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                  +     L E             E       L ++    +    E    +L  R
Sbjct: 409 GQWQEEAMKAEKWLFECRNLEEKCDLVTKE----KERLLTERDSLREANEELRCAQLQPR 464

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF----RLLSRQKEEIEK 600
           G  +    L      +GL +   E    ++R+   +     KR          ++EE+++
Sbjct: 465 GLAQ--ADLSLDPTPSGLENLAAEILPAELRETLVRLQLENKRLCQQEAADRERQEELQR 522

Query: 601 QIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
            + +      G   +  +    L E+  Q+ +++   A+ E  GK 
Sbjct: 523 HLEEANRARHGLEAQQRLNQQQLSELRAQVEELQK--ALQEQGGKT 566



 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA-KGE 610
           +L+    D  L     E  + +++Q  Q   +L +  + L  + +E+ +   +    +  
Sbjct: 289 RLESSREDDRLRCLELEREVAELQQRNQALTSLSQEAQALKDEMDELRQSSERARQLETT 348

Query: 611 AEKTAILISILHEVHIQIHQIESQEA 636
                  +  L E+  Q+ Q+E + A
Sbjct: 349 LNSCRRRLGELQELRRQVRQLEERNA 374


>gi|124008271|ref|ZP_01692967.1| replicative DNA helicase [Microscilla marina ATCC 23134]
 gi|123986220|gb|EAY26049.1| replicative DNA helicase [Microscilla marina ATCC 23134]
          Length = 496

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 65/171 (38%), Gaps = 18/171 (10%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           GK+  +    E  +L  L+    ++      L    +     Q+++  +F  + E     
Sbjct: 13  GKVPPQALELEEIVLGALMIDRNVISSVVSILKPKDFYKPAHQEIYQTIFDLYAESNPVD 72

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + Q L ++       +LD     + +   T   N     + + + +A       + R
Sbjct: 73  ILTVSQLLRKKV------KLDMVGGASYITKLTDIVNSGANVEYHARIIAEL----SIKR 122

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ----IESQEAMIEG 640
              EI  +I     K   ++++  + +L ++  + H+    + ++EA+I G
Sbjct: 123 TLIEITAEIQ----KEAFQESSDALELLDQIQHKTHEATKHLFNKEALIIG 169


>gi|123455564|ref|XP_001315525.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121898204|gb|EAY03302.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2207

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 90/287 (31%), Gaps = 39/287 (13%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++        +L      + +   + E    + ++  ++ + +      I +I D   
Sbjct: 718 DSLQQQIDEKQRQLDELIKAIEERKNQSEQNKENNDSLQQQIDEKQRQLEAIKNIPDNS- 776

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                + ++++LQ L + +  +        K+     D K              +  KK 
Sbjct: 777 -----EELKNQLQILEKAFNDKMEQNAANNKQLQDAIDSKKKELENTPEVQDNSEELKKQ 831

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                            L +  +++   + DN EL+     L     EQK    E     
Sbjct: 832 -----------------LDDINEQIEKRKNDNKELEDKLEELSKAINEQKLADEETAK-- 872

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                  + +K  + +          TE     +    +Q     ++      + +++E+
Sbjct: 873 -KNEELEKQIKDKEAEKNSLVPVEDKTEELARKLADLEKQIAEQLEKQNETDGKNKDLEQ 931

Query: 601 QIAQVTAKGE-------------AEKTAILISILHEVHIQIHQIESQ 634
           QI +   K +               +   L+  L+++  +I++I+ Q
Sbjct: 932 QIKEKQEKLDELKNNFIEDTKEKENEIEELLQELNDLDSKINEIQDQ 978


>gi|118363547|ref|XP_001014998.1| hypothetical protein TTHERM_00672210 [Tetrahymena thermophila]
 gi|89296765|gb|EAR94753.1| hypothetical protein TTHERM_00672210 [Tetrahymena thermophila SB210]
          Length = 3482

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 83/281 (29%), Gaps = 15/281 (5%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
                    L  E L L +    +  +           E E  +   +  IK   L     
Sbjct: 2869 QEMKKIIDLNKEQLELKENKILQLKQTYDKEKEAILRETEHQINEKLEEIKAYTLE---I 2925

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            +  RD L  L +K + E      Y++   +        Q+  Q  ++     +    ++ 
Sbjct: 2926 EKFRDEL-VLTKKQLMEEKNRADYFQDQFKIYMGNQEHQKFQQEQIIMNTCLENKRSQQD 2984

Query: 486  ALLLTLINH-PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             +    +N    +  +       +         L   L     E +  L E+        
Sbjct: 2985 KI--HFLNEIEDLKNKNIAVTDKLDQMIAVNDNLTEVLKEKSQEIQELLIEKDKLLYERE 3042

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                 L+++   +               DV +   +    ++      +Q E+++ QI Q
Sbjct: 3043 QEQIQLERIQNNLHQLEEERENFLKETQDVYE--LKEKVSHQETNRYKQQIEDLKLQIQQ 3100

Query: 605  VTAKGEAE------KTAILISILHEVHIQIHQIESQEAMIE 639
               +   +      +       + ++  QI+++  Q + I+
Sbjct: 3101 KEFETNEQFQKNLNQLEQSQQEIIQLKDQINKLNYQISQIQ 3141



 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 90/291 (30%), Gaps = 35/291 (12%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY--YYSQA 427
              + L+ E+  L +    +  +  +     ++ +           IKD++L       Q 
Sbjct: 2815 KIKSLLEENKSLQE----KVAKQNAIEWYADQLKTTKETIEENQMIKDRQLIENKELIQE 2870

Query: 428  IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ---KGPSQRLMQSSLVKGKLSKKPSLRE 484
            ++  +    ++   + +   +  +   + ++    +   Q   +   +K    +    R+
Sbjct: 2871 MKKIIDLNKEQLELKENKILQLKQTYDKEKEAILRETEHQINEKLEEIKAYTLEIEKFRD 2930

Query: 485  AALL--LTLINHPAILQEQYQELADIRYDNNELQKLWSF--LFSDFVEQK--YFLPEEIH 538
              +L    L+           +   I   N E QK      + +  +E K          
Sbjct: 2931 ELVLTKKQLMEEKNRADYFQDQF-KIYMGNQEHQKFQQEQIIMNTCLENKRSQQDKIHFL 2989

Query: 539  QRLCERGFGELL--KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
              + +     +    +LD+ +      +   +    ++++   +   L         Q E
Sbjct: 2990 NEIEDLKNKNIAVTDKLDQMIAVNDNLTEVLKEKSQEIQELLIEKDKLLYEREQEQIQLE 3049

Query: 597  EIEKQIAQVTAKGEA-----------------EKTAILISILHEVHIQIHQ 630
             I+  + Q+  + E                  ++T      + ++ +QI Q
Sbjct: 3050 RIQNNLHQLEEERENFLKETQDVYELKEKVSHQETNRYKQQIEDLKLQIQQ 3100



 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 38/325 (11%), Positives = 106/325 (32%), Gaps = 22/325 (6%)

Query: 328  LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
             +      +++            +   + ED           +   L+       D   +
Sbjct: 3114 NQLEQSQQEIIQLKDQINKLNYQISQIQSEDRLKIQERVHFDST--LLELQKINEDNQIE 3171

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY---YSQAIRDRLQQLFQKYITEHS 444
                       + + +      +      D K R     Y   I   L   +++ + E  
Sbjct: 3172 IANLKDKLLKLENQRDKLQRQLSEEKEENDLKFRKSEQNYENQIAS-LDTKYKRLLDEFK 3230

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLV--KGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 ++   +  +Q       + + +   K +L+K    +E  L +  I +    ++  
Sbjct: 3231 YLSESYEHKKQELNQFKEELPQIANKIKNEKIELTKSIEEKEKQLDILSIQNKVSNEKIL 3290

Query: 503  QELADIRYDNNELQKLWSFLFSD-----FVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
               + +    N+ +++ +   +       +E KY    +  Q+L ++        L   +
Sbjct: 3291 DLESQVNIMINKNEQIQNTYLALQTQYQVLENKYTQQHKKIQQLEKQN-DNTKSHLTISL 3349

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR----QKEEIE----KQIAQVTAKG 609
            + A    + T+  I+++    ++ +    R   L +    Q E++E    K++ +V  + 
Sbjct: 3350 QQAETQLSQTKMQIIELETKNKRLIDDISRANHLKQLMKDQMEDLEINFKKEMDEVREES 3409

Query: 610  EAEKTAILISILHEVHIQIHQIESQ 634
              +          E++ +I ++ +Q
Sbjct: 3410 IKDLNNKFEREKRELNFKIQKLGNQ 3434



 Score = 37.2 bits (84), Expect = 9.0,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 112/339 (33%), Gaps = 16/339 (4%)

Query: 305  YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             + +LL  ++ + +   D      + A   I  +   +    ++NF      +D      
Sbjct: 2604 DRSQLLKMIATKQLEIDDLKQKNNQEAI-LIQRIDKLVEENEQLNFQNQKLAQDYQQLNE 2662

Query: 365  CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
               +          L   +     +TE           ++ I        +K  + +   
Sbjct: 2663 RVNQNLKYMKEYNLLNEENQSLCEKTEEYQELLDKLEIKITILSNENNTLLKMMEEKQEQ 2722

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNA--RHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
             + ++ R ++  Q   +         KKN   +  +++    +     L    + ++   
Sbjct: 2723 IELLKQREEEHSQSQNSMTKFQDLLEKKNQLIKQLEKQLREAQEQNKVLNNEIIFQQEQF 2782

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
             E  L      + A+     ++   I   + E       + S   E K    E++ ++  
Sbjct: 2783 TEDKL------NEAVSNIVSEKNTLIEQISAENSNFKIKIKSLLEENKSLQ-EKVAKQNA 2835

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
               + + LK     + +  +          ++ Q  ++ + L K    L       E +I
Sbjct: 2836 IEWYADQLKTTKETIEENQMIKDRQLIENKELIQEMKKIIDLNKEQLELK------ENKI 2889

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
             Q+    + EK AIL    H+++ ++ +I++    IE F
Sbjct: 2890 LQLKQTYDKEKEAILRETEHQINEKLEEIKAYTLEIEKF 2928


>gi|268572101|ref|XP_002641234.1| Hypothetical protein CBG09100 [Caenorhabditis briggsae]
          Length = 1136

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/324 (10%), Positives = 102/324 (31%), Gaps = 8/324 (2%)

Query: 319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES 378
           +  +             + +   L        V   + +D    +        ++   + 
Sbjct: 413 MTPEYTVRYNGQTMTENEFLNQLLHIVQHQKSVSERQQQDKFERMEQERIR--QEKEEKL 470

Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438
             +       E E       D +A +    +      + +  R    +  R+  +   ++
Sbjct: 471 REMERRRQLAEAEKARQAEIDRQAAIYAEQERMAMERERELERIQQEERKREMERIRQEE 530

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
              E S      +      +++  ++R+ Q      K       R+  +   +     I 
Sbjct: 531 IAMEISRMRELERLQM---ERQQKNERVRQELEAARKQKILEEERQRKIKEQMREMEKIR 587

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           +EQ +          E +        +   ++    E + Q+  ER   +L  + + + +
Sbjct: 588 KEQEEAREIEMRRLEEERAREMERVREEEMERQQQIERLRQQEEERKRKKLEMEKEERKK 647

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT---A 615
                    +    ++ +  Q  L   ++ ++L ++ EE +  I +   + +AE+     
Sbjct: 648 ALIEEERKRKVLEKELEERRQAILEEERKRKILEKEMEERQTAIYEEQQRRKAEEERRKQ 707

Query: 616 ILISILHEVHIQIHQIESQEAMIE 639
             +    ++  Q+ ++  + + +E
Sbjct: 708 KEMEERKQIQEQMRKVSEERSRLE 731


>gi|87310387|ref|ZP_01092517.1| DNA primase domain protein [Blastopirellula marina DSM 3645]
 gi|87286886|gb|EAQ78790.1| DNA primase domain protein [Blastopirellula marina DSM 3645]
          Length = 778

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)

Query: 34 AVKGDYWACCPFHDEKTPSFHCN---DSKGFYYCF-SC 67
               + ACCP HD+ TPS   +   D K    CF  C
Sbjct: 16 RQGSGWMACCPAHDDHTPSLSISEGDDGKVLMKCFAGC 53


>gi|196015781|ref|XP_002117746.1| hypothetical protein TRIADDRAFT_61800 [Trichoplax adhaerens]
 gi|190579631|gb|EDV19722.1| hypothetical protein TRIADDRAFT_61800 [Trichoplax adhaerens]
          Length = 1160

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 95/288 (32%), Gaps = 34/288 (11%)

Query: 350  FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
            F+     +D  ++     +    K   + L        +E E        +         
Sbjct: 817  FIAAIESDDDGAWKASSHRRHTNKREEKKLSKEYEKMLKEREKEKQKMKKDAELRRKRGD 876

Query: 410  NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
               +  +D ++       +++ ++   Q    E     +  ++  R  D +     + + 
Sbjct: 877  ISNSKPEDNEV-------LQNEIKDPIQDADAEIRKKTKEQREAKRLADAERRRLEVQRK 929

Query: 470  SLVKGKLSKKPSLREAALLLTLINHPAILQEQY---QELADIRYDNNELQKLWSFLFSDF 526
               + +L  + +  E  ++     +  I++E+    Q L D+     E ++    +  + 
Sbjct: 930  RAERKELEARQAEEEKRVIEEREENERIMKEKLAEMQRLKDLERRQREEKEKMDAVIKER 989

Query: 527  VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
              ++    E + Q+L E     LL+   +Q                       Q    Y 
Sbjct: 990  QLEQEREAEALKQKLAEEEIQRLLRARLQQ-----------------------QKEEEYL 1026

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            R  + +R+ +E E++I +   K + E    +   +     + ++++ Q
Sbjct: 1027 RKEMENRKLQEEEQRIKEAEEKNQRELENKI-RQVQAAKKRENEMKDQ 1073


>gi|298243587|ref|ZP_06967394.1| replicative DNA helicase [Ktedonobacter racemifer DSM 44963]
 gi|297556641|gb|EFH90505.1| replicative DNA helicase [Ktedonobacter racemifer DSM 44963]
          Length = 448

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 9/148 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           KL  +    E  +L ++I  P  + +    L    +  +  + ++  +   + + +    
Sbjct: 3   KLLPQNVEAECGVLGSIIIDPEAIVQVADFLRAEDFYRDAHRVIFEVIVQLYEQHEPADF 62

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I   L ++G      +L+       + S           + Y   ++   R  +L R 
Sbjct: 63  ITICDELEQQG------KLEEVGGADYITSLVNLVPTSANVEHYGHIVS---RTAILRRL 113

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILH 622
                +  A    +G+A+        L 
Sbjct: 114 IHAAGQIAAVAYDEGDADVALDKAEQLI 141


>gi|330469727|ref|YP_004407470.1| DnaB domain-containing protein helicase domain-containing protein
           [Verrucosispora maris AB-18-032]
 gi|328812698|gb|AEB46870.1| DnaB domain-containing protein helicase domain-containing protein
           [Verrucosispora maris AB-18-032]
          Length = 651

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 10/136 (7%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +        E A++   + +P+++ +    LA   +      +LW  L +     +   
Sbjct: 2   TRPPAHDHAAEQAVIGAALLNPSVVADLAPTLAPADFHRPAHGRLWETLCAMHATGEPLD 61

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  +   L   G       L +    + L +      I      Y + +  + R     R
Sbjct: 62  PIALAAHLAATG------DLAKVGGASYLHTLIAAVPITANAGHYARIVTDHAR----RR 111

Query: 594 QKEEIEKQIAQVTAKG 609
           Q  ++    A+   +G
Sbjct: 112 QVADLGTYFAEKADQG 127


>gi|297294945|ref|XP_001093376.2| PREDICTED: centrosomal protein of 120 kDa-like [Macaca mulatta]
          Length = 986

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 90/278 (32%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 645 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 702

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++     S      ++    + ++  + + +Q S+ + K   
Sbjct: 703 AEYTILEGKLQKTLIDLEKREQQLASAESELQREKKELQSERQRNLQELQDSIRRAKEDC 762

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   +  L           Q+L D       L+K +         +     +  
Sbjct: 763 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 819

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L  +   EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 820 INLLTWKKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 876

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+   +  A  E +        L ++  +++++  QE
Sbjct: 877 LEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 914


>gi|291336915|gb|ADD96444.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426]
          Length = 278

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/142 (11%), Positives = 50/142 (35%), Gaps = 7/142 (4%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++  L+ HP +  E  Q + +  + +   + ++    ++ +  +      + ++  
Sbjct: 11  LEKDVIYGLLKHPEVFLENQQLVKEDAFTHPTHKIIFQVFKNNILNAEPVDVVTLSRKCK 70

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           + G  +       +  +  L++A +E        G  + +        L  Q  +  +  
Sbjct: 71  KEGLEDKDGVPVFEYLENSLYAAISE-------DGLLELIRDLHWLSYLRFQWRKCYEAA 123

Query: 603 AQVTAKGEAEKTAILISILHEV 624
           A           + +IS + E+
Sbjct: 124 AVAMKSKNTSNKSSVISQIDEI 145


>gi|253569514|ref|ZP_04846924.1| PrmN1 [Bacteroides sp. 1_1_6]
 gi|251841533|gb|EES69614.1| PrmN1 [Bacteroides sp. 1_1_6]
          Length = 316

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
          Y    ++  N      W   P  +E  PSF  N  +  ++ F     G+ +
Sbjct: 20 YSPVKQQGVNL-----WYKSPLREENEPSFKVNTEREQWFDFGLGKGGNII 65


>gi|168215888|ref|ZP_02641513.1| replicative DNA helicase [Clostridium perfringens NCTC 8239]
 gi|182382366|gb|EDT79845.1| replicative DNA helicase [Clostridium perfringens NCTC 8239]
          Length = 433

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 64/170 (37%), Gaps = 8/170 (4%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A+L T+  +   + +   EL D  + N++ Q ++  + + +     F    + ++L  
Sbjct: 12  EEAILGTITANNKYMLKVIGELEDKDFYNSKNQMIYRAMCNLYKNSIPFDVVVLSEKLSN 71

Query: 544 R--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR----FRLLSRQKEE 597
                   L  +  +       + ++   IV  +   ++ +   KR       ++ +   
Sbjct: 72  EVKNGAITLTDIAEKTSHIDYGTLSSHVKIVKEKSRERKLINACKRVISSEGNVNSKINY 131

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF--GKMS 645
           ++ ++ +V      +    +  ++ +    I    + E  + GF  G +S
Sbjct: 132 LQNELLEVNQVNRKDSIKNMSDVMFDTLEGIENTYNNEMGVRGFKTGILS 181


>gi|261335024|emb|CBH18018.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 865

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 61/214 (28%), Gaps = 16/214 (7%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            +R + L ++         R  +       +K     + Q +       ++    E    
Sbjct: 530 ANRAKNLQERERLIELRNERLQEMMMEKVRRKREEDLIAQQNAAARIKLQQERNAERE-- 587

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFG 547
                     +E  + L          Q     L      ++    EE   R+       
Sbjct: 588 ------KEYQRELQERLERAEERTARQQAARDHLLEQRRIRRKKNAEERQARIERMAEMQ 641

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E   ++ R+  +             + +Q   Q L   +  +      +E+ +Q  Q   
Sbjct: 642 EQQSEILRRKYEERDAKVQLVQEERERKQREAQELLAARAAKS-----QELREQARQRAL 696

Query: 608 KGEAEKTAILISILHEVHIQIHQI--ESQEAMIE 639
             E E     +    EV  ++ Q+  + +E + E
Sbjct: 697 LREEEVRQAALGQQQEVENRLRQLTKQREEEVAE 730


>gi|152989614|ref|YP_001345558.1| type VI secretion ATPase [Pseudomonas aeruginosa PA7]
 gi|150964772|gb|ABR86797.1| type VI secretion ATPase, ClpV1 family [Pseudomonas aeruginosa PA7]
          Length = 902

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 68/225 (30%), Gaps = 31/225 (13%)

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQE 500
            +     W +  +H ++     R  Q   V      K  L    +  T+  H    IL E
Sbjct: 340 RTVAATTWAEYKKHIEKDPALTRRFQVVQVDEPSEHKAILMMRGVASTMEQHHQVQILDE 399

Query: 501 QYQELADIRYDNNELQKLWSF---LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
             +    + +     ++L      L      +       +   + +      ++ L+ ++
Sbjct: 400 ALEAAVRLSHRYIPARQLPDKSVSLLDTACARTAISLHAVPAEVDDS--RRRIEALETEL 457

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ---------------- 601
                 SA   A     R          +R   L R+  E ++                 
Sbjct: 458 AIIRRESAIGVATGERQRNAETLLAEERERLAGLERRWAEEKRLVDELLETRARLRAAAE 517

Query: 602 --------IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
                   + +  A+ + E+   L + L E+  Q+  ++ +E +I
Sbjct: 518 AVDAGGTPLGEGEARLDEEQRQALHARLAELQAQLSALQGEEPLI 562


>gi|20089515|ref|NP_615590.1| antigen [Methanosarcina acetivorans C2A]
 gi|19914425|gb|AAM04070.1| antigen [Methanosarcina acetivorans C2A]
          Length = 656

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 31/77 (40%)

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           ++L +  +         +A    + Q  ++ +   ++     ++  ++E ++ +   + E
Sbjct: 322 EKLSQLEKQQMEKEKQAKAERERLAQLERERIEAERQAEAERKRLAQLESELQEARRQEE 381

Query: 611 AEKTAILISILHEVHIQ 627
            E+   L   L EV  Q
Sbjct: 382 TERVTRLEKELKEVQAQ 398



 Score = 44.5 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 47/111 (42%), Gaps = 1/111 (0%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E +     E  + +  R   E L+ L     +        +       +  ++ LA  +R
Sbjct: 291 ETERTDVVETDEEIRVRQERERLEGLRGTQEEKLSQLEKQQMEKEKQAKAERERLAQLER 350

Query: 588 FRLLSRQKEEIEK-QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            R+ + ++ E E+ ++AQ+ ++ +  +       +  +  ++ ++++QE +
Sbjct: 351 ERIEAERQAEAERKRLAQLESELQEARRQEETERVTRLEKELKEVQAQEEI 401


>gi|332221574|ref|XP_003259938.1| PREDICTED: centrosomal protein of 120 kDa isoform 1 [Nomascus
           leucogenys]
          Length = 987

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 90/278 (32%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 645 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 702

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++     S      ++    + ++  + + +Q+S+ + K   
Sbjct: 703 AEYTILEGKLQKTLIDLEKREQQLASAESELQREKKELQSERQRNLQELQASIRRAKEDC 762

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   +  L           Q+L D       L+K +         +     +  
Sbjct: 763 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 819

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 820 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 876

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+   +  A  E +        L ++  +++++  QE
Sbjct: 877 LEQMRLRYLATEEKDTVKTEQQELLDIRNELNRLRQQE 914


>gi|311252430|ref|XP_003125094.1| PREDICTED: LOW QUALITY PROTEIN: c-type lectin domain family 4
           member F-like [Sus scrofa]
          Length = 604

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 77/226 (34%), Gaps = 17/226 (7%)

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             K   + +K+   + +  +   D +  L  +Y    S       +  R +     +  L
Sbjct: 243 QAKMANSSLKNVDAQIHVLRGSLDGINDLRTQYQVLRSXLEGATAEMQRLKGSLQNANAL 302

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
              +    K S   +  E  +L     H      +   L     +    Q     + +  
Sbjct: 303 SAQTQTFLKGSLDNTSAEIQVLRG---HLEKASSEIHLLKR-DLETVTAQT---QIANSH 355

Query: 527 VEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
           +EQ           L         ++ L+  +R+A          I  +++G + A AL 
Sbjct: 356 LEQTDAQMHVFKTDLESTTALKAKIQMLNDLLRNASQ-------EIQTLKRGLKDATALN 408

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            + R+L R  +E   +I ++  KG+ E T  L + + E   ++  +
Sbjct: 409 SKARVLERNLQEARAEIQKL--KGDLENTKTLATRIQEEQRRLEAL 452


>gi|312879781|ref|ZP_07739581.1| primary replicative DNA helicase [Aminomonas paucivorans DSM 12260]
 gi|310783072|gb|EFQ23470.1| primary replicative DNA helicase [Aminomonas paucivorans DSM 12260]
          Length = 450

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 47/143 (32%), Gaps = 10/143 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++       E A+L   +     L      L+   + +   +  +  +     + +    
Sbjct: 8   RVPPHNLEAERAVLGACLLDRDALLAVTDLLSPGDFYDQRHRMAYELVQEMARKDRAVDA 67

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                    +G   LL++L  Q   AGL  A T     +             R + + R+
Sbjct: 68  LTFWDEGERKG---LLERLGGQPFIAGLVDAVTTTANAEHHARLV-------RDKAVHRR 117

Query: 595 KEEIEKQIAQVTAKGEAEKTAIL 617
             ++  +IA++    E ++   L
Sbjct: 118 LIQVGAEIARLGYAEERDREETL 140


>gi|261881018|ref|ZP_06007445.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332247|gb|EFA43033.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 301

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 4/68 (5%)

Query: 8  IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67
          I  +   I +   +      D +       +     P   EK  SF  N     +Y F  
Sbjct: 3  IDQIK-KIKLQEFLA---TIDCKPVKQYGVNLMYLSPLRTEKHASFKVNTELNLWYDFGI 58

Query: 68 HVKGDHLS 75
             G+ + 
Sbjct: 59 SRGGNIID 66


>gi|291570797|dbj|BAI93069.1| replicative DNA helicase [Arthrospira platensis NIES-39]
          Length = 587

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 10/162 (6%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           ++ L  S L   +   +    E A+L  ++  P  +      L    +  +  Q ++   
Sbjct: 2   AESLPISPLSNDRNPPQNIEAEEAILGGILLDPEAISRVADILKPEHFAISAHQSIYRAT 61

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            +  ++ K      +   L +            Q+  AG      E     +        
Sbjct: 62  LTLHLQGKPTDLMTVTTWLADH----------NQLDAAGGQMKLAELVDRTISAVNIDQY 111

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           +L    + L RQ  +  +++AQ+  +   E   +L      +
Sbjct: 112 SLLVIDKFLRRQLIQAGQEVAQLGYQTNMELEKVLDQAEQRI 153


>gi|145516020|ref|XP_001443904.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124411304|emb|CAK76507.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1636

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 96/261 (36%), Gaps = 20/261 (7%)

Query: 379  LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438
                D  ++   E       +     E  ++N  + ++DQ  +  Y+  I+      +  
Sbjct: 963  KEKSDKKFQAAQEEFYHKLRETEQNYEEEIENLKDDLRDQVQQ--YTNTIQQ-----YDH 1015

Query: 439  YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
             I         ++K+ +   ++  S +   ++ ++ +++   + R      +LI    +L
Sbjct: 1016 EIALKQQTIEIFEKHIKETKEQLISLQNNNNATLEQQMNSFTTER-----KSLIQKIDVL 1070

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
              Q   L        E   L      D +E +    E+  ++  +    E  +QL+R   
Sbjct: 1071 SSQLNNL------QKEHMALQQK--KDLLENEKSRKEQQFEQSRKEWQEEKKEQLERLEE 1122

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
                     +  +    +  ++   + ++   L ++ E++++Q+    ++ + +      
Sbjct: 1123 TKLRLQKMNDEFLEKKIEYGRETALIQQQNEFLQKKIEDLQRQLDTQQSRFDEKLKQQKN 1182

Query: 619  SILHEVHIQIHQIESQEAMIE 639
              L E+  ++ + + ++  IE
Sbjct: 1183 EYLVELEQKLERAQEEKTAIE 1203


>gi|331674511|ref|ZP_08375271.1| replicative DNA helicase [Escherichia coli TA280]
 gi|331068605|gb|EGI40000.1| replicative DNA helicase [Escherichia coli TA280]
          Length = 491

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 41/156 (26%), Gaps = 7/156 (4%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L  L+       E    L+   +     + ++  +    V  +      + + L 
Sbjct: 48  AEQAVLGGLMLENERWDEVVLMLSPDDFYVAPHRAIFRAMSELAVNGQPLDLITLSEHLE 107

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +G      +LD     A L   +           Y   +      R L      +   +
Sbjct: 108 HQG------RLDVLGGFAYLAELSKNTPSAANIMAYAGIVVEKSVLRQLQATGNTLIADV 161

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           A        +        L  +       E  EA +
Sbjct: 162 A-APNATSRDVLDAAERRLFALAQNRTLRERTEASL 196


>gi|301059858|ref|ZP_07200750.1| integrase core domain protein [delta proteobacterium NaphS2]
 gi|300446070|gb|EFK09943.1| integrase core domain protein [delta proteobacterium NaphS2]
          Length = 789

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 31  KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80
           K +    + W   PF H+EK  S H + S+  +  FS    G  + F   +
Sbjct: 560 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREM 609


>gi|224026167|ref|ZP_03644533.1| hypothetical protein BACCOPRO_02923 [Bacteroides coprophilus DSM
           18228]
 gi|224019403|gb|EEF77401.1| hypothetical protein BACCOPRO_02923 [Bacteroides coprophilus DSM
           18228]
          Length = 862

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 75/272 (27%), Gaps = 41/272 (15%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + L  +DM              +    +   +     +I        
Sbjct: 220 RILRGDVPENLKNKQLYSLDMGALVAGAKYKGEFEERLKSVINEVTKSDGNI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      ++N P                      +   L   +             R+ +
Sbjct: 328 ERRFQTVMVNEPDTASSI---------------SILRGLKERYENHHQV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + +        +  I  + +    A  L      L  + +EIE+++ 
Sbjct: 366 EAIIAAVELSNRYITER----FLPDKAIDLMDEA---AAKLRMERDSLPEELDEIERRLK 418

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           Q+  + EA K     + L +++ +I +++ QE
Sbjct: 419 QLEIEREAIKREKDEAKLAQLNKEIAELKEQE 450



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 75/205 (36%), Gaps = 10/205 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++    +      S  +++    + +   +  +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQTVMVNEPDTASSISILRGLKERYENHHQVRIKDEAIIAAVELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + E++     I   +    KL         +      +EI +RL +        + ++
Sbjct: 377 RYITERFLPDKAIDLMDEAAAKLRME-----RDSLPEELDEIERRLKQLEIEREAIKREK 431

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
                          I ++++      A ++  + L  + +E +K+I Q+  + +  +  
Sbjct: 432 DEAKLAQL----NKEIAELKEQETSYKAKWQSEKQLVNKIQENKKEIEQLKFEADKAERE 487

Query: 616 ILISILHEVH-IQIHQIESQEAMIE 639
                + E+   ++  +E++   I+
Sbjct: 488 GDYGRVAEIRYGKLQALENEIKSIQ 512


>gi|237843203|ref|XP_002370899.1| trichohyalin, putative [Toxoplasma gondii ME49]
 gi|211968563|gb|EEB03759.1| trichohyalin, putative [Toxoplasma gondii ME49]
 gi|221481903|gb|EEE20273.1| trichohyalin, putative [Toxoplasma gondii GT1]
 gi|221502400|gb|EEE28133.1| trichohyalin, putative [Toxoplasma gondii VEG]
          Length = 1427

 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 5/120 (4%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            ELQ L   L     E +    ++  ++  ++   E L +LD +++ A            
Sbjct: 170 EELQVLRDELEHKIRENEQLHVQQFEEKQRQQMQQERLARLDEELQQAHHAYQQLRKEQA 229

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI--LHEVHIQIHQ 630
           +  +  Q   ALY+  R   RQ EE   +  ++  + + + T +      L      + +
Sbjct: 230 ETEKRVQTCEALYQEEREEKRQIEE---RFRELKRETDLQLTRLSEQKDVLQHQQAHLRR 286


>gi|332221576|ref|XP_003259939.1| PREDICTED: centrosomal protein of 120 kDa isoform 2 [Nomascus
           leucogenys]
          Length = 961

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 90/278 (32%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 619 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 676

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++     S      ++    + ++  + + +Q+S+ + K   
Sbjct: 677 AEYTILEGKLQKTLIDLEKREQQLASAESELQREKKELQSERQRNLQELQASIRRAKEDC 736

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   +  L           Q+L D       L+K +         +     +  
Sbjct: 737 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 793

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 794 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 850

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+   +  A  E +        L ++  +++++  QE
Sbjct: 851 LEQMRLRYLATEEKDTVKTEQQELLDIRNELNRLRQQE 888


>gi|254380625|ref|ZP_04995991.1| chaperone protein clpB [Streptomyces sp. Mg1]
 gi|194339536|gb|EDX20502.1| chaperone protein clpB [Streptomyces sp. Mg1]
          Length = 879

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 74/214 (34%), Gaps = 16/214 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++K+I + +   R +++          +  +++    + ++     +++ AL+    ++H
Sbjct: 324 YRKHIEKDAALERRFQQVLVEEPSVEDTISILRGLRERLEVFHGVKIQDTALVSAATLSH 383

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +    +L + + S   E            + +    +      
Sbjct: 384 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDEITRRVTRLEIEDAALSKETD--- 439

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                  L     E   +      + A   ++  R   R+ +E+ +++ QV  + E  + 
Sbjct: 440 -PASKTRLEELRRELADLRGEADAKHAQ--WEAERQAIRRVQELRQELEQVRHEAEEAER 496

Query: 615 AILISI--------LHEVHIQIHQIESQEAMIEG 640
           A  ++         L ++  ++   E Q A  +G
Sbjct: 497 AYDLNRAAELRYGSLQDLERRLAAEEEQLAAKQG 530


>gi|71908307|ref|YP_285894.1| hypothetical protein Daro_2694 [Dechloromonas aromatica RCB]
 gi|71847928|gb|AAZ47424.1| conserved hypothetical protein [Dechloromonas aromatica RCB]
          Length = 309

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 13/83 (15%)

Query: 41  ACCPFH--DEKTPSFHCNDS--KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96
             CP    +++   F  +D   +G YYC  C   GD +  + A+ G  F  + + +   A
Sbjct: 32  CSCPICGGNDR---FRFDDKEGRGTYYCR-CGA-GDGIKLVMAVKGWDFKTAAREIEQAA 86

Query: 97  GV----PLPVVDPKIEKKEKIQT 115
           GV    P+     + EK EK++ 
Sbjct: 87  GVVQAGPIHSPQGEAEKVEKLRR 109


>gi|328544466|ref|YP_004304575.1| toxin/protease secretion system [polymorphum gilvum SL003B-26A1]
 gi|326414208|gb|ADZ71271.1| Putative toxin/protease secretion system [Polymorphum gilvum
           SL003B-26A1]
          Length = 444

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 19/136 (13%)

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            L       +    +++ +++ +  F + ++ L+ Q    G      +  + D+     +
Sbjct: 155 ELLEARRASRTGRKKQLEEQIRQ--FDKQVEGLEAQRLAKGREIELIDDELADLIGLLDK 212

Query: 581 ALALYKRFRLLSRQKEEIE-------KQIAQVTAKG----------EAEKTAILISILHE 623
            L    R   L R K  +E        QIAQ               + E  A ++  L +
Sbjct: 213 KLVARNRVTALQRDKARLEGDYGSLIAQIAQSREAISERRLLILQIDDEARAEVLEQLQD 272

Query: 624 VHIQIHQIESQEAMIE 639
           V  ++ ++E Q    E
Sbjct: 273 VRGRLARLEEQRIAAE 288


>gi|118364916|ref|XP_001015679.1| hypothetical protein TTHERM_00077380 [Tetrahymena thermophila]
 gi|89297446|gb|EAR95434.1| hypothetical protein TTHERM_00077380 [Tetrahymena thermophila SB210]
          Length = 1286

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/295 (10%), Positives = 104/295 (35%), Gaps = 32/295 (10%)

Query: 368  KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
            +    +L      + D L   + ++  + +   + +    +++    +++++++  +S+ 
Sbjct: 725  QDEIARLNKLLKSVKDELGFYQAQHIEYVSRFNQEKTNKLVRHYDELLENEQIKNMFSKD 784

Query: 428  IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            ++D L     +   +     +  +      + +            +G +SK   L +  +
Sbjct: 785  MQDSLAATVNEQEKQIEELQKQIQNIKEEYETREKQLIEFNEQQNEGLVSKNVELEQDLI 844

Query: 488  ------------LLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFLFSDFVEQKY 531
                        +  L      ++++Y E+     ++  +NNEL++    L     +   
Sbjct: 845  RVQNQAREQADQIAYLEQEVQQIKQRYIEIEMKKDNLILENNELKERIDQLEETRNQNLE 904

Query: 532  FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----- 586
               + I          ELL+Q ++++          +A   ++ +   +     +     
Sbjct: 905  IKEDAIKHI---TELQELLEQKNQEIERLNQQRDLIQAEYDELLKSLTEMENNLQVVQHN 961

Query: 587  ------RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                  +   L R+ +E++  + Q       E+   +   + E+  +++  + +E
Sbjct: 962  FSLSKNQHEQLKRETQELKSILVQKGPG--DEEHDEIQQSIQELKKELNIQDEEE 1014


>gi|73970960|ref|XP_531888.2| PREDICTED: similar to CG6014-PA [Canis familiaris]
          Length = 1236

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 90/280 (32%), Gaps = 13/280 (4%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P   +        E        + +   +++         +E  + +   ++ +   K  
Sbjct: 895  PRETLEYKAALELEMWKEMQEDIFENQLRQKELAHMQALAEEWKKRDRERESLVK--KKV 952

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                     ++  L  L ++            ++    + ++  + + +Q S+ + K   
Sbjct: 953  AEYTVLEGKLQKTLIDLEKREQQLVLAESEVQRERKELKSERERNLQELQDSIRRAKEDC 1012

Query: 479  KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
               +  E   +  L      LQ+Q  +  +      + + L         +Q       +
Sbjct: 1013 VHQVELERLKMRQLEEDKHRLQQQLNDAEN------KYKILEKEFHQFKDQQSNKPEIRL 1066

Query: 538  HQRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
               +        EL ++L+   +    +       + ++ +  Q+      +   L +Q+
Sbjct: 1067 QSEINLLTLEKVELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQ 1124

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            EE+E+   +  A  E +        L ++  +++++  QE
Sbjct: 1125 EELEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 1164


>gi|302531949|ref|ZP_07284291.1| predicted protein [Streptomyces sp. AA4]
 gi|302440844|gb|EFL12660.1| predicted protein [Streptomyces sp. AA4]
          Length = 417

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 26/92 (28%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
                          +  H     P     +   V         L E ALL  L++ PA 
Sbjct: 2   TVPAPRVAGRAGPPADVGHAPPPAPVTTGARRDAVASPPGGATRLAERALLGALLHRPAR 61

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           L +    L    + + EL  ++S +       
Sbjct: 62  LADVQGWLRPHDFADPELGAVYSAMQDLHGRG 93


>gi|302344019|ref|YP_003808548.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075]
 gi|301640632|gb|ADK85954.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075]
          Length = 749

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 28  DRRKTNAVKGDYWACCPFHDEKTP--SFHCNDSKGFYYCFSCHV-KGDHLSFLSALLGCS 84
            R+    V GD            P  SF CN   G +  F+     GD +S ++A     
Sbjct: 33  KRQGRELVAGDIHG--------NPGKSFSCNTETGVWSDFATGESGGDVISLVAAQEELG 84

Query: 85  FIESVQRLAAIAGVPLPVVDPK 106
             ++ + +A   G+      PK
Sbjct: 85  QAKAARMIAEELGLAPVTPKPK 106


>gi|297530994|ref|YP_003672269.1| ATP-dependent chaperone ClpB [Geobacillus sp. C56-T3]
 gi|297254246|gb|ADI27692.1| ATP-dependent chaperone ClpB [Geobacillus sp. C56-T3]
          Length = 864

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 72/208 (34%), Gaps = 16/208 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI +     R +++          +  +++    + ++     + + AL+   +   
Sbjct: 319 YRQYIEKDPALERRFQQVLVQEPSVEDTISILRGLKERYEVHHGVKIHDRALVAAAVLSD 378

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF--------G 547
             + +++     I   +     + + + S   E    +   +   + E            
Sbjct: 379 RYISDRFLPDKAIDLVDEACATIRTEMESMPSELDEVMRRVMQLEIEEAALSKETDEASR 438

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E L  L +++ D    +   +A     ++   +   L +      R+ EE E +      
Sbjct: 439 ERLAALQKELADLREKANAMKAQWQKEKEALDRVRRLREALERAKRELEEAENE------ 492

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQ 634
             +  K A L    + ++  Q+ Q+E +
Sbjct: 493 -YDLNKAAELRHGRIPQLEKQLKQLEQE 519


>gi|162454183|ref|YP_001616550.1| putative exported glycine/glutamine-rich protein [Sorangium
           cellulosum 'So ce 56']
 gi|161164765|emb|CAN96070.1| putative exported glycine/glutamine-rich protein [Sorangium
           cellulosum 'So ce 56']
          Length = 646

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 80/221 (36%), Gaps = 11/221 (4%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +LF+          +  +  +         + +    L + +  ++    E  LL     
Sbjct: 192 ELFKDAAKALDRQDQSPEMKSAVERFNQLIEDIANKRLDRTEAFRRMEALERELLKGAEA 251

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELL 550
               L+E  +E       ++  + +   L    +E+     +E+ ++L ++        +
Sbjct: 252 DLKALEEALKETGLDLKKSDLAKGVGESLEKKDLEKAKKDLKELAEKLRDKKQKFDKAEI 311

Query: 551 KQLDRQVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK- 608
           ++L + + +A        A I + R +  +Q L   ++     +Q+ E E+ + +   + 
Sbjct: 312 ERLRKALAEAASRRKEALAAINEKRAEAREQLLKQKQKASANDQQRSEQERLLKKKEREL 371

Query: 609 ----GEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
                EAE+       L  +  ++   ++ E ++   G  +
Sbjct: 372 ERLDREAEQKERTGRQLDRLDRELA--KAAEDLMRDLGMSA 410


>gi|71656402|ref|XP_816749.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70881897|gb|EAN94898.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1238

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 64/163 (39%), Gaps = 5/163 (3%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            ++S++    +  L    + +  +  E   +   ++  + + + L   L     E +   
Sbjct: 332 QEVSEQAEDLQRQLEELRVENEELRAEHENKTRGLQEVSEQAEDLQRQLEELRAENEELR 391

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            E+ H+    +   E  + L R++ +    +    A      +G Q+   L ++   L R
Sbjct: 392 AEDEHKTRGLQEVSEQAEDLQRRLEELRAENEELRAEDEHKTRGLQE---LSEQAEDLQR 448

Query: 594 QKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634
           Q EE+  +  ++ A+ E +      +     ++  Q+ ++ ++
Sbjct: 449 QLEELRAENEELRAEDENKTRGLREVSEQAEDLQRQLEELRAE 491



 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 63/163 (38%), Gaps = 5/163 (3%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            ++S++    +  L      +  +  E   +   ++  + + + L   L     E +   
Sbjct: 367 QEVSEQAEDLQRQLEELRAENEELRAEDEHKTRGLQEVSEQAEDLQRRLEELRAENEELR 426

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            E+ H+    +   E  + L RQ+ +    +    A   +  +G ++     ++   L R
Sbjct: 427 AEDEHKTRGLQELSEQAEDLQRQLEELRAENEELRAEDENKTRGLREV---SEQAEDLQR 483

Query: 594 QKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634
           Q EE+  +  ++ A+ E +      +     ++  Q+ ++ ++
Sbjct: 484 QLEELRAENEELRAEHEHKTRGLQEVSEQAEDLQRQLEELRAE 526



 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 77/219 (35%), Gaps = 12/219 (5%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           ++++LR  Y    R   +   Q    +        +      + +  ++ L        +
Sbjct: 141 ENEELRGEYEDKTRGLQEVSEQAEDLQRQLEELRAENEELRGEHEDKTRGL-------QE 193

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           +S++    +  L      +  +  E   +   ++  + + + L   L     E +    E
Sbjct: 194 VSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRGE 253

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           + ++    +   E  + L RQ+ +  + +    A       G Q+   L ++   L RQ 
Sbjct: 254 DENKTRGLQEVSEQAEDLQRQLEELRVENEELRAEDEGKACGLQE---LSEQAEDLQRQL 310

Query: 596 EEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIE 632
           EE+  +  ++  + E +      +     ++  Q+ ++ 
Sbjct: 311 EELRAENEELRGEHEHKTRGLQEVSEQAEDLQRQLEELR 349



 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            ++S++    +  L      +  +  E   +   +R  + + + L   L     E +   
Sbjct: 507 QEVSEQAEDLQRQLEELRAENEELRGEHEHKTRGLREVSEQAEDLQRRLEELRAENEELR 566

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            E        RG  E+ +Q +   R      A  E    +     +    + ++   L R
Sbjct: 567 AE---DEHKTRGLREVSEQAEDLQRQLEELRAENEELRGEHEHKTRGLREVSEQAEDLQR 623

Query: 594 QKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634
           Q EE+  +  ++ A+ E +      +     ++  Q+ ++ ++
Sbjct: 624 QLEELRAENEELRAEDEHKTRGLREVSEQAEDLQRQLEELRAE 666



 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 83/254 (32%), Gaps = 10/254 (3%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ---KYITEHS 444
            E    +     E       L+      +D + R    +A  + L+   +   + + E S
Sbjct: 381 EELRAENEELRAEDEHKTRGLQEVSEQAEDLQRRLEELRAENEELRAEDEHKTRGLQELS 440

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKG--KLSKKPSLREAALLLTLINHPAILQEQY 502
                 ++       +    R    +  +G  ++S++    +  L      +  +  E  
Sbjct: 441 EQAEDLQRQLEELRAENEELRAEDENKTRGLREVSEQAEDLQRQLEELRAENEELRAEHE 500

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
            +   ++  + + + L   L     E +    E        RG  E+ +Q +   R    
Sbjct: 501 HKTRGLQEVSEQAEDLQRQLEELRAENEELRGEH---EHKTRGLREVSEQAEDLQRRLEE 557

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISI 620
             A  E    +     +    + ++   L RQ EE+  +  ++  + E +      +   
Sbjct: 558 LRAENEELRAEDEHKTRGLREVSEQAEDLQRQLEELRAENEELRGEHEHKTRGLREVSEQ 617

Query: 621 LHEVHIQIHQIESQ 634
             ++  Q+ ++ ++
Sbjct: 618 AEDLQRQLEELRAE 631



 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 87/256 (33%), Gaps = 19/256 (7%)

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             ++    +++   +    Q   + L+   ++   EH    R  ++ +   +        
Sbjct: 43  EHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEE 102

Query: 467 MQSSLVKGKLSKKPSLR------------EAALLLTLINHPAILQEQYQELADIRYDNNE 514
           +++   + +   +   R            +  L      +  +  E   +   ++  + +
Sbjct: 103 LRAENEELRAEDEHKTRGLQEVSEQAEDLQRQLEELRAENEELRGEYEDKTRGLQEVSEQ 162

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
            + L   L     E +    E   +    +   E  + L RQ+ +    +    A   D 
Sbjct: 163 AEDLQRQLEELRAENEELRGEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDK 222

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQI- 631
            +G Q+     ++   L RQ EE+  +  ++  + E +      +     ++  Q+ ++ 
Sbjct: 223 TRGLQEV---SEQAEDLQRQLEELRAENEELRGEDENKTRGLQEVSEQAEDLQRQLEELR 279

Query: 632 -ESQEAMIEGFGKMSG 646
            E++E   E  GK  G
Sbjct: 280 VENEELRAEDEGKACG 295



 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 86/257 (33%), Gaps = 17/257 (6%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            + +      E  EL    ++    +++   +    Q   + L+   ++   EH    R 
Sbjct: 481 LQRQLEELRAENEELRAEHEHKTRGLQEVSEQAEDLQRQLEELRAENEELRGEHEHKTRG 540

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR------------EAALLLTLINHPAI 497
            ++ +   +        +++   + +   +   R            +  L      +  +
Sbjct: 541 LREVSEQAEDLQRRLEELRAENEELRAEDEHKTRGLREVSEQAEDLQRQLEELRAENEEL 600

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
             E   +   +R  + + + L   L     E +    E+ H+    R   E  + L RQ+
Sbjct: 601 RGEHEHKTRGLREVSEQAEDLQRQLEELRAENEELRAEDEHKTRGLREVSEQAEDLQRQL 660

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TA 615
            +    +    A      +G Q+     ++   L R+ EE+  +  ++ A+ E +     
Sbjct: 661 EELRAENEELRAEDEHKTRGLQEV---SEQAEDLQRRLEELRAENEELRAEDEHKTRGLQ 717

Query: 616 ILISILHEVHIQIHQIE 632
            +     ++  Q+ ++ 
Sbjct: 718 EVSEQAEDLQRQLEELR 734



 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 61/163 (37%), Gaps = 5/163 (3%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            ++S++    +  L      +  +  E   +   +R  + + + L   L     E +   
Sbjct: 542 REVSEQAEDLQRRLEELRAENEELRAEDEHKTRGLREVSEQAEDLQRQLEELRAENEELR 601

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            E  H+    R   E  + L RQ+ +    +    A      +G ++     ++   L R
Sbjct: 602 GEHEHKTRGLREVSEQAEDLQRQLEELRAENEELRAEDEHKTRGLREV---SEQAEDLQR 658

Query: 594 QKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634
           Q EE+  +  ++ A+ E +      +     ++  ++ ++ ++
Sbjct: 659 QLEELRAENEELRAEDEHKTRGLQEVSEQAEDLQRRLEELRAE 701



 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 82/242 (33%), Gaps = 17/242 (7%)

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             ++    +++   +    Q   + L+   ++   EH    R  ++ +   +        
Sbjct: 148 EYEDKTRGLQEVSEQAEDLQRQLEELRAENEELRGEHEDKTRGLQEVSEQAEDLQRQLEE 207

Query: 467 MQSSLVK------------GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
           +++   +             ++S++    +  L      +  +  E   +   ++  + +
Sbjct: 208 LRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRGEDENKTRGLQEVSEQ 267

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
            + L   L    VE +    E+  +    +   E  + L RQ+ +    +          
Sbjct: 268 AEDLQRQLEELRVENEELRAEDEGKACGLQELSEQAEDLQRQLEELRAENEELRGEHEHK 327

Query: 575 RQGYQQALALYKRFRLLSRQKEEI--EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +G Q+     ++   L RQ EE+  E +  +   + +      +     ++  Q+ ++ 
Sbjct: 328 TRGLQEV---SEQAEDLQRQLEELRVENEELRAEHENKTRGLQEVSEQAEDLQRQLEELR 384

Query: 633 SQ 634
           ++
Sbjct: 385 AE 386


>gi|326336693|ref|ZP_08202861.1| chaperone protein ClpB [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691163|gb|EGD33134.1| chaperone protein ClpB [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 860

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/280 (8%), Positives = 77/280 (27%), Gaps = 38/280 (13%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  +++  +DM              +    +   + +   +I        
Sbjct: 220 RIVNGDVPENLKDKTIYSLDMGALIAGAKYKGEFEERLKSVVKEVTSSDGNI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGGGEGAMDAANILKPALARGELRAIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      ++  P                      +   +   +             R+ +
Sbjct: 328 ERRFQKVMVEEPD---------------TESAISILRGIKEKYEAHHKV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + +  L     +       +   +  +  +   +L R+  ++E +I 
Sbjct: 366 DAIIAAVELSERYIPNRYLPDKAIDLMDEAAAKLRMEINSKPEELDVLDRKIMQLEIEIE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI----ESQEAMIE 639
            +  + + EK  +L + L  +  + + +    + ++ +++
Sbjct: 426 AIKRENDEEKLRLLNAELANLKEERNALFSKWQGEKTLVD 465


>gi|330823064|ref|YP_004386367.1| hypothetical protein Alide2_0429 [Alicycliphilus denitrificans
          K601]
 gi|329308436|gb|AEB82851.1| hypothetical protein Alide2_0429 [Alicycliphilus denitrificans
          K601]
          Length = 154

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 28 DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF-SCHV-KGDHLSFLSALLGCSF 85
          +R+            C FH   T S   N   G + C   C    GD L++  A  G  F
Sbjct: 24 ERKGKWRTTA-----CNFHG-STDSLRINTDSGSFVCMTGCGARGGDVLAYHQAAHGLGF 77

Query: 86 IESVQRL 92
          I++ + L
Sbjct: 78 IDAAKEL 84


>gi|322489715|emb|CBZ24975.1| putative kinesin K39 [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 2663

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/372 (10%), Positives = 105/372 (28%), Gaps = 34/372 (9%)

Query: 280  YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVL 339
            + +  +          S+        +  ++ +  PR +     D+  L    +   +  
Sbjct: 793  FDERWAFPDLKDATTTSTHTKVFPHAEWNIVLQNKPRELDRIFRDEAALACRVRPRHITH 852

Query: 340  CHLIPG-----NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
                 G       V   +    +D ++ ++ Y   A + L        D L     EN  
Sbjct: 853  LCFDLGSLRATFTVEHSINISDKDIENRLQHYTFRAMQDLYDHRYSPPDGLDALAFENAR 912

Query: 395  FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR------LQQLFQKYITEHSGYGR 448
                 +  + +I   N          R      + ++       ++       +      
Sbjct: 913  LRQDRDNDQCDILAAN--------AERERLQSELEEKGSEADAAKEDIDALRGQLEEANA 964

Query: 449  YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
              ++     ++KG      +      +   + +  E   L           E  ++ ++ 
Sbjct: 965  ERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ---------SELEEKGSEA 1015

Query: 509  RYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
                 +   L   L     E    Q     +       +     L  QL+    +     
Sbjct: 1016 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1075

Query: 565  ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILH 622
            +  E    +     +   AL  +    + ++E ++ ++ +  ++ +   E    L   L 
Sbjct: 1076 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLE 1135

Query: 623  EVHIQIHQIESQ 634
            E + +  +++S+
Sbjct: 1136 EANAERERLQSE 1147



 Score = 43.7 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 71/219 (32%), Gaps = 13/219 (5%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            R+RLQ   ++  +E               ++    +  +QS L +       +  +   L
Sbjct: 1947 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 2006

Query: 489  LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE------EI 537
               +         +  E  ++ ++      +   L   L     E++    E      E 
Sbjct: 2007 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 2066

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                 +     L  QL+    +     +  E    +     +   AL  +    + ++E 
Sbjct: 2067 DAAKEDNDDDALRGQLEEANAERERLQSELEEKGSEADAAKEDIDALRGQLEEANAERER 2126

Query: 598  IEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
            ++ ++ +  ++ +   E    L   L E + +  +++S+
Sbjct: 2127 LQSELEEKGSEADAAKEDIDALRGQLEEANAERERLQSE 2165



 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            R+RLQ   ++  +E               ++    +  +QS L +       +  +   L
Sbjct: 1597 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1656

Query: 489  LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539
               +         +  E  ++ ++      +   L   L     E    Q     +    
Sbjct: 1657 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1716

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +     L  QL+    +     +  E    +     +   AL  +    + ++E ++
Sbjct: 1717 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDIDALRGQLEEANAERERLQ 1776

Query: 600  KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
             ++ +  ++ +   E    L   L E + +  +++S+
Sbjct: 1777 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1813



 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            R+RLQ   ++  +E               ++    +  +QS L +       +  +   L
Sbjct: 1562 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1621

Query: 489  LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539
               +         +  E  ++ ++      +   L   L     E    Q     +    
Sbjct: 1622 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1681

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +     L  QL+    +     +  E    +     +   AL  +    + ++E ++
Sbjct: 1682 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1741

Query: 600  KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
             ++ +  ++ +   E    L   L E + +  +++S+
Sbjct: 1742 SELEEKGSEADAAKEDIDALRGQLEEANAERERLQSE 1778



 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            R+RLQ   ++  +E               ++    +  +QS L +       +  +   L
Sbjct: 1632 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1691

Query: 489  LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539
               +         +  E  ++ ++      +   L   L     E    Q     +    
Sbjct: 1692 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1751

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +     L  QL+    +     +  E    +     +   AL  +    + ++E ++
Sbjct: 1752 DAAKEDIDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1811

Query: 600  KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
             ++ +  ++ +   E    L   L E + +  +++S+
Sbjct: 1812 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1848



 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 64/212 (30%), Gaps = 15/212 (7%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             D  ++       +        ++     ++KG      +  +   +   + +  E   L
Sbjct: 2103 ADAAKEDIDALRGQLEEANAERERLQSELEEKGSEADAAKEDIDALRGQLEEANAERERL 2162

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQRLCER 544
                       E  ++ ++      +   L   L     E    Q     +       + 
Sbjct: 2163 Q---------SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKE 2213

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                L  QL+    +     +  E    +     +   AL  +    + ++E ++ ++ +
Sbjct: 2214 DNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEE 2273

Query: 605  VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
              ++ +   E    L   L E + +  +++S+
Sbjct: 2274 KGSEADAAKEDNDALRGQLEEANAERERLQSE 2305



 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 30/279 (10%), Positives = 84/279 (30%), Gaps = 18/279 (6%)

Query: 362  FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
              + +    +  ++      +D +++ E        P     L   L +       +   
Sbjct: 1372 HTKVFPHAEWNIVLQNKPRELDRIFRDEAALACRVRPRHITHLCFDLGSLRATFTVEHSI 1431

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                + I +RLQ    + + +             +  +  P   L   +    +L +   
Sbjct: 1432 NISDKDIENRLQHYTFRAMQDL------------YDHRYSPPDGLDALAFENARLRQDRD 1479

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEI 537
              +  +L        +  E  ++ ++      +   L   L     E    Q     +  
Sbjct: 1480 NDQCDILAANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGS 1539

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                 +     L  QL+    +     +  E    +     +   AL  +    + ++E 
Sbjct: 1540 EADAAKEDIDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERER 1599

Query: 598  IEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
            ++ ++ +  ++ +   E    L   L E + +  +++S+
Sbjct: 1600 LQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1638



 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 63/212 (29%), Gaps = 15/212 (7%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             D  ++       +        ++     ++KG      +      +   + +  E   L
Sbjct: 1751 ADAAKEDIDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERL 1810

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQRLCER 544
                       E  ++ ++      +   L   L     E    Q     +       + 
Sbjct: 1811 Q---------SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKE 1861

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                L  QL+    +     +  E    +     +   AL  +    + ++E ++ ++ +
Sbjct: 1862 DNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEE 1921

Query: 605  VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
              ++ +   E    L   L E + +  +++S+
Sbjct: 1922 KGSEADAAKEDNDALRGQLEEANAERERLQSE 1953



 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 63/212 (29%), Gaps = 15/212 (7%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             D  ++       +        ++     ++KG      +      +   + +  E   L
Sbjct: 2138 ADAAKEDIDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERL 2197

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQRLCER 544
                       E  ++ ++      +   L   L     E    Q     +       + 
Sbjct: 2198 Q---------SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKE 2248

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                L  QL+    +     +  E    +     +   AL  +    + ++E ++ ++ +
Sbjct: 2249 DNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEE 2308

Query: 605  VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
              ++ +   E    L   L E + +  +++S+
Sbjct: 2309 KGSEADAAKEDNDALRGQLEEANAERERLQSE 2340



 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            R+RLQ   ++  +E               ++    +  +QS L +       +  +   L
Sbjct: 1001 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1060

Query: 489  LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539
               +         +  E  ++ ++      +   L   L     E    Q     +    
Sbjct: 1061 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1120

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +     L  QL+    +     +  E    +     +   AL  +    + ++E ++
Sbjct: 1121 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1180

Query: 600  KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
             ++ +  ++ +   E    L   L E + +  +++S+
Sbjct: 1181 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1217



 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            R+RLQ   ++  +E               ++    +  +QS L +       +  +   L
Sbjct: 1036 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1095

Query: 489  LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539
               +         +  E  ++ ++      +   L   L     E    Q     +    
Sbjct: 1096 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1155

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +     L  QL+    +     +  E    +     +   AL  +    + ++E ++
Sbjct: 1156 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1215

Query: 600  KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
             ++ +  ++ +   E    L   L E + +  +++S+
Sbjct: 1216 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1252



 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            R+RLQ   ++  +E               ++    +  +QS L +       +  +   L
Sbjct: 1071 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1130

Query: 489  LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539
               +         +  E  ++ ++      +   L   L     E    Q     +    
Sbjct: 1131 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1190

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +     L  QL+    +     +  E    +     +   AL  +    + ++E ++
Sbjct: 1191 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1250

Query: 600  KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
             ++ +  ++ +   E    L   L E + +  +++S+
Sbjct: 1251 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1287



 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            R+RLQ   ++  +E               ++    +  +QS L +       +  +   L
Sbjct: 1106 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1165

Query: 489  LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539
               +         +  E  ++ ++      +   L   L     E    Q     +    
Sbjct: 1166 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1225

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +     L  QL+    +     +  E    +     +   AL  +    + ++E ++
Sbjct: 1226 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1285

Query: 600  KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
             ++ +  ++ +   E    L   L E + +  +++S+
Sbjct: 1286 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1322



 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            R+RLQ   ++  +E               ++    +  +QS L +       +  +   L
Sbjct: 1141 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1200

Query: 489  LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539
               +         +  E  ++ ++      +   L   L     E    Q     +    
Sbjct: 1201 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1260

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +     L  QL+    +     +  E    +     +   AL  +    + ++E ++
Sbjct: 1261 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1320

Query: 600  KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
             ++ +  ++ +   E    L   L E + +  +++S+
Sbjct: 1321 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1357



 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            R+RLQ   ++  +E               ++    +  +QS L +       +  +   L
Sbjct: 2159 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 2218

Query: 489  LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539
               +         +  E  ++ ++      +   L   L     E    Q     +    
Sbjct: 2219 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 2278

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +     L  QL+    +     +  E    +     +   AL  +    + ++E ++
Sbjct: 2279 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 2338

Query: 600  KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
             ++ +  ++ +   E    L   L E + +  +++S+
Sbjct: 2339 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 2375



 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            R+RLQ   ++  +E               ++    +  +QS L +       +  +   L
Sbjct: 2194 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 2253

Query: 489  LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539
               +         +  E  ++ ++      +   L   L     E    Q     +    
Sbjct: 2254 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 2313

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +     L  QL+    +     +  E    +     +   AL  +    + ++E ++
Sbjct: 2314 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 2373

Query: 600  KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
             ++ +  ++ +   E    L   L E + +  +++S+
Sbjct: 2374 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 2410



 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            R+RLQ   ++  +E               ++    +  +QS L +       +  +   L
Sbjct: 2229 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 2288

Query: 489  LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539
               +         +  E  ++ ++      +   L   L     E    Q     +    
Sbjct: 2289 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 2348

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +     L  QL+    +     +  E    +     +   AL  +    + ++E ++
Sbjct: 2349 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 2408

Query: 600  KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
             ++ +  ++ +   E    L   L E + +  +++S+
Sbjct: 2409 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 2445



 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            R+RLQ   ++  +E               ++    +  +QS L +       +  +   L
Sbjct: 1702 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDIDAL 1761

Query: 489  LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539
               +         +  E  ++ ++      +   L   L     E    Q     +    
Sbjct: 1762 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1821

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +     L  QL+    +     +  E    +     +   AL  +    + ++E ++
Sbjct: 1822 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1881

Query: 600  KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
             ++ +  ++ +   E    L   L E + +  +++S+
Sbjct: 1882 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1918



 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 70/217 (32%), Gaps = 11/217 (5%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            R+RLQ   ++  +E               ++    +  +QS L +       +  +   L
Sbjct: 1667 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1726

Query: 489  LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539
               +         +  E  ++ ++      ++  L   L     E    Q     +    
Sbjct: 1727 RGQLEEANAERERLQSELEEKGSEADAAKEDIDALRGQLEEANAERERLQSELEEKGSEA 1786

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +     L  QL+    +     +  E    +     +   AL  +    + ++E ++
Sbjct: 1787 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1846

Query: 600  KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
             ++ +  ++ +   E    L   L E + +  +++S+
Sbjct: 1847 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1883



 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/212 (9%), Positives = 63/212 (29%), Gaps = 15/212 (7%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
              +          +        ++     ++KG      +  +   +   + +  E   L
Sbjct: 2068 AAKEDNDDDALRGQLEEANAERERLQSELEEKGSEADAAKEDIDALRGQLEEANAERERL 2127

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQRLCER 544
                       E  ++ ++      ++  L   L     E    Q     +       + 
Sbjct: 2128 Q---------SELEEKGSEADAAKEDIDALRGQLEEANAERERLQSELEEKGSEADAAKE 2178

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                L  QL+    +     +  E    +     +   AL  +    + ++E ++ ++ +
Sbjct: 2179 DNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEE 2238

Query: 605  VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
              ++ +   E    L   L E + +  +++S+
Sbjct: 2239 KGSEADAAKEDNDALRGQLEEANAERERLQSE 2270



 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 69/222 (31%), Gaps = 7/222 (3%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              R      + ++  +         +  G+  + NA     +   +     +    + + 
Sbjct: 2015 AERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDND 2074

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLP 534
              +LR   L         +  E  ++ ++      ++  L   L     E    Q     
Sbjct: 2075 DDALR-GQLEEANAERERLQSELEEKGSEADAAKEDIDALRGQLEEANAERERLQSELEE 2133

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            +       +     L  QL+    +     +  E    +     +   AL  +    + +
Sbjct: 2134 KGSEADAAKEDIDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAE 2193

Query: 595  KEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
            +E ++ ++ +  ++ +   E    L   L E + +  +++S+
Sbjct: 2194 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 2235



 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 66/212 (31%), Gaps = 13/212 (6%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             D  ++       +        ++     ++KG      +      +   + +  E   L
Sbjct: 1996 ADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERL 2055

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQRLCER 544
             +      + ++  +  A     +N+   L   L     E    Q     +       + 
Sbjct: 2056 QS-----ELEEKGSEADAAKE--DNDDDALRGQLEEANAERERLQSELEEKGSEADAAKE 2108

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                L  QL+    +     +  E    +     +   AL  +    + ++E ++ ++ +
Sbjct: 2109 DIDALRGQLEEANAERERLQSELEEKGSEADAAKEDIDALRGQLEEANAERERLQSELEE 2168

Query: 605  VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
              ++ +   E    L   L E + +  +++S+
Sbjct: 2169 KGSEADAAKEDNDALRGQLEEANAERERLQSE 2200


>gi|300712756|ref|YP_003738569.1| Kinetochore-Ndc80 complex, subunit Spc25 [Halalkalicoccus jeotgali
           B3]
 gi|299126440|gb|ADJ16778.1| Kinetochore-Ndc80 complex, subunit Spc25 [Halalkalicoccus jeotgali
           B3]
          Length = 647

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 17/160 (10%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP--EEIHQRLCERG--FGELLK 551
            + QE+ +   ++  +  EL        S   E+       E     L +R     EL  
Sbjct: 360 DLRQEKVERRNELTRELEELTAQRKEYTSTRDERAELERALETAVAELTDRTDRISELEA 419

Query: 552 QLDRQVRDAGLWS--ATTEANIVDVRQGYQQALALYKRFRLLSRQ-------KEEIEKQI 602
           + +  V            + +  D+    ++   L  +   L R+        E +E+Q+
Sbjct: 420 RREELVEKIEDLESAVEADEDDEDLLAAQKEVTQLELKRDRLERKQNALAEDIENLEEQL 479

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           A+        +   + + L E+  +I +IE +   IE F 
Sbjct: 480 AERDQL--EARREEINAELEELRTRIERIERE--AIEAFN 515


>gi|238686656|sp|A5DHL9|EIF3A_PICGU RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 110 kDa subunit homolog; Short=eIF3
           p110; AltName: Full=Translation initiation factor eIF3,
           p110 subunit homolog
 gi|190346559|gb|EDK38672.2| hypothetical protein PGUG_02770 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 891

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 87/297 (29%), Gaps = 19/297 (6%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +R   +     L      +     +R   +R        A +    +   N +K  
Sbjct: 524 PAELVRSQLQKFAYTLSKTVDTIDPENARRLEASREAAVKRAVAGISEEQEEIANRVKVM 583

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R       + +  +   +  +E     +  ++     +Q+  S   ++      +  +
Sbjct: 584 DERKRVIDVAKRKQDEEAARLKSERLSAEQKAEQERMLAEQERRSLEKLEREKHLIRERE 643

Query: 479 KPSLREAA----LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K  + E      ++   +++   L      +  I   N + + L   L +   +  +   
Sbjct: 644 KRKIAEEINAKGIIKIDLDNLENLDTDKLRIMQIEQLNKDKKNLEEKLRALSKKTDHTER 703

Query: 535 E---EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY------ 585
                  Q L +    ++ ++            A  + +  +     ++   L       
Sbjct: 704 AFRRYELQYLEKDAEAQIEQEAKNYELVKANKIAKAKKDFEEAHALKERFTRLVPDYSEF 763

Query: 586 ------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 K    L + + E + Q+ +   +   +     I  L +   +  Q E +EA
Sbjct: 764 KSEINAKNKDKLKQLQAEAKAQLERAKQERIEQIKRERIEELAQRKREQIQAEQEEA 820


>gi|13272546|gb|AAK17202.1|AF335500_1 major plasmodial myosin heavy chain [Physarum polycephalum]
          Length = 2148

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 90/284 (31%), Gaps = 11/284 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                        +KL+   L  V      E + R      +R++LE  L +     ++  
Sbjct: 1291 QEQKTKQQLEKAKKLLETELHAVQGQLDDEKKGRDIVDR-KRSDLESELADLREDFEEAL 1349

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                     + +LQ  +++            +K               QS +   + + +
Sbjct: 1350 SARKVIGDAKSKLQSDYEELKKIAESDAAARQKAQEQVKILELQNADSQSLVQDAEAAAE 1409

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRY------DNNELQKLWSFLFSDFVEQKYFL 533
               R+   L   +      +   ++ A +R+       + EL++    +           
Sbjct: 1410 KIERQRRTLEADLQDVQE-KLDEEQKARVRFQKQLAKTDEELRQAKLKIDDLTNATSDQY 1468

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                  +         L+ LD +           E  + D++   ++A++   +   + +
Sbjct: 1469 IALKRLQEENSNQHRELEALDEKTAQWNRLRKQAEVQLEDLKAQLEEAISAKLK---VEK 1525

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            QK ++E ++  + +  +     +    L +   ++ +++ Q A 
Sbjct: 1526 QKRDLENKVEDLESAADVNSANVHPDELRKKQQEVDELKKQLAA 1569


>gi|296100767|ref|YP_003610913.1| putative DNA helicase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295055226|gb|ADF59964.1| putative DNA helicase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 430

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 45/151 (29%), Gaps = 10/151 (6%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           +       E    L+   +     + ++  +       K      + + +  RG  + L+
Sbjct: 1   MLDNDRWDEVALRLSADDFFQKVHKVIYQEMTRLVAAGKPLDLITLSESIESRG-KDALE 59

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV--TAKG 609
           QL      A L   T  A        Y   +A   R     RQ   I  +I +   T   
Sbjct: 60  QLGGFAYLAELSKNTPSAA---NIVAYCDIVARTSRA----RQLASIGAEITESVRTPGT 112

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           + ++             +  + E    ++EG
Sbjct: 113 DIDRVMETAEQKITRLAERAEPEQGVTLLEG 143


>gi|293392261|ref|ZP_06636595.1| replicative DNA helicase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952795|gb|EFE02914.1| replicative DNA helicase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 468

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 54/162 (33%), Gaps = 10/162 (6%)

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
               S    + +     +       E A+L +++ +     +  + +    +   E + +
Sbjct: 2   ASKNSPPAKEKNTTNLNIPPHSIEAEQAVLGSILLNNFYWDDVAENVVKEDFYRFEHRLI 61

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           +  +     +Q       + Q L      E+++Q+      A L + T  A         
Sbjct: 62  FEEMEKLIAQQAPVDLITLEQALKS---REVIEQVGGFAYLAELSNNTPSAAN------- 111

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
             A A   R + + R+   +  +IAQ +   + +    L+  
Sbjct: 112 VVAYANVVREKAIMRELISVGNKIAQNSYSPKGQDVKHLLDE 153


>gi|149748805|ref|XP_001490094.1| PREDICTED: CDC42 binding protein kinase alpha (DMPK-like) isoform 1
           [Equus caballus]
          Length = 1719

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 50/124 (40%), Gaps = 15/124 (12%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQ 579
                        +    L  +   E +++L +QVR++       E       ++   ++
Sbjct: 472 LQYSTADGPLTASK---DLEIKNLKEEIEKLRKQVRESSHLEQQLEEANSVRRELDDAFR 528

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQ 630
           Q  A  K+ + L +++E++ K++ Q + + + +   +          +    E++ ++ +
Sbjct: 529 QIKAYEKQIKALQQEREDLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTE 588

Query: 631 IESQ 634
           + +Q
Sbjct: 589 LHAQ 592


>gi|261867672|ref|YP_003255594.1| replicative DNA helicase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413004|gb|ACX82375.1| replicative DNA helicase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 468

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 54/162 (33%), Gaps = 10/162 (6%)

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
               S    + +     +       E A+L +++ +     +  + +    +   E + +
Sbjct: 2   ASKNSPPAKEKNTTNLNIPPHSIEAEQAVLGSILLNNFYWDDVAENVVKEDFYRFEHRLI 61

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           +  +     +Q       + Q L      E+++Q+      A L + T  A         
Sbjct: 62  FEEMEKLIAQQAPVDLITLEQALKS---REVIEQVGGFAYLAELSNNTPSAAN------- 111

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
             A A   R + + R+   +  +IAQ +   + +    L+  
Sbjct: 112 VVAYANVVREKAIMRELISVGNKIAQNSYSPKGQDVKHLLDE 153


>gi|170061198|ref|XP_001866132.1| myosin heavy chain [Culex quinquefasciatus]
 gi|167879533|gb|EDS42916.1| myosin heavy chain [Culex quinquefasciatus]
          Length = 1871

 Score = 46.8 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 87/257 (33%), Gaps = 6/257 (2%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            ++    E E         + ELE  +++    I++++ R       + +LQ   Q    +
Sbjct: 808  EIELCAEAEEGRARLAARKQELEELMQDLEARIEEEEERVNALSNEKKKLQINIQDLEEQ 867

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                    +K    + Q     + M+  +   +   +  L+E  ++    N  +    + 
Sbjct: 868  LEEEEAARQKLHLEKVQLDAKLKKMEEEVALTEDQNQKLLKEKKIIEERANDLSQTLAEE 927

Query: 503  QE----LADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
            +E    LA ++  +   + +L   L  D  +++     +           E + +   QV
Sbjct: 928  EEKAKHLAKLKAKHESTIAELEERLLKDHQQRQETDRSKRKIETEVADLKEQINERRIQV 987

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +        E  +        +  A     + + R+ E    +I +     +  ++   
Sbjct: 988  EEMQQQLIKREEELAQTLVRIDEESAAKAAAQKVQRELESQLAEIQEDLEAEKLARSKAE 1047

Query: 618  ISILHEVHIQIHQIESQ 634
                 +++ ++  ++++
Sbjct: 1048 -KQKRDLNEELEALKNE 1063


>gi|322789355|gb|EFZ14667.1| hypothetical protein SINV_10357 [Solenopsis invicta]
          Length = 1714

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 93/283 (32%), Gaps = 6/283 (2%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
                + R Y +   EK ++      ++    E E         + ELE  L +    I+
Sbjct: 642 HSAQEYERKYQQAMAEKTVLAEQLQAEVELCAEAEEMRVRLVARKQELEEILHDLEARIE 701

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +++ R       + +LQ        +        +K    + Q     + ++  L     
Sbjct: 702 EEEERSAALTQEKKKLQLNISDLEEQLEEEEAARQKLQLEKVQCDAKIKKLEEDLALSDD 761

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQE----LADIRYDNNE-LQKLWSFLFSDFVEQKY 531
           + +  L+E  +L    N  +    + +E    L+ ++  +   +  L   L  D  +++ 
Sbjct: 762 TNQKLLKEKKILEERANDLSQTLAEEEEKAKHLSKLKAKHEATIADLEERLLKDHQQRQE 821

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               +           + L +   QV +  L     E  +  V     +  A   + +  
Sbjct: 822 VDRSKRKVETEVSDLKDQLAERKTQVEEMQLQLGKREEELNQVMAKMDEEGAAKAQAQKA 881

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            R+ E    ++ +   + E            +++ ++  ++++
Sbjct: 882 LRELESQLAELQE-DLEAEKAARGKAEKQKRDLNEELEALKNE 923



 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 74/226 (32%), Gaps = 17/226 (7%)

Query: 418  QKLRYYYSQAI---RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
            +  R    + +    ++   +  +     +      ++    +          +   +  
Sbjct: 1476 ENERDELQEEVNNNANKGTLMLDEKRRLEARIATLEEELEEEQSNAEIVMDRARKGQIVI 1535

Query: 475  KLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDFVEQKYF 532
            +        E +    L +H  +L+ Q +EL       +  +  K  + +     +    
Sbjct: 1536 EQLTTDLATERSTTQKLESHKMLLERQNKELKAKLTELETAQRAKTKATIQQLESKINNL 1595

Query: 533  LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +   +        ++ ++L++++++  L       N    ++   QA  +  R + L 
Sbjct: 1596 DEQLETEAKERFAQQKINRKLEKKLKELSLQLEDERRNSDQYKE---QAEKVNARMKALK 1652

Query: 593  RQKEEIEKQIAQ-------VTAKGEA--EKTAILISILHEVHIQIH 629
            RQ +E E++I++          + +   E    L   L  +  ++ 
Sbjct: 1653 RQLDEAEEEISRHKTMKRKAQREMDDMIESHEELTRELTHLKNKLR 1698


>gi|307269285|ref|ZP_07550638.1| CHC2 zinc finger protein [Enterococcus faecalis TX4248]
 gi|306514382|gb|EFM82944.1| CHC2 zinc finger protein [Enterococcus faecalis TX4248]
          Length = 399

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 48/141 (34%), Gaps = 21/141 (14%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
            Y  + + +L     I ++ G   +   R   N    +       HD    SF  N  K 
Sbjct: 3   KYNPNRLVELAKQKSILDVAGMLGMQLKRVGRNYQWAE-------HD----SFVINPDKN 51

Query: 61  FYYCFSCHV---KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117
           ++  FS        D +  +  +   SF E++  L     +   V    I K  K +  +
Sbjct: 52  YFSWFSRGNEYLGKDVIEMVKVVNNVSFKEALHFL-----LEAEVGTFDITKVPKSKPFV 106

Query: 118 IRLIE-VATDFFHHSLKNARD 137
            ++ E    D+    LK  R 
Sbjct: 107 YKVKETKTFDYARKYLKEERG 127


>gi|284051735|ref|ZP_06381945.1| replicative DNA helicase [Arthrospira platensis str. Paraca]
          Length = 412

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 10/162 (6%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           ++ L  S L   +   +    E A+L  ++  P  +      L    +  +  Q ++   
Sbjct: 2   AESLPISPLSNDRNPPQNIEAEEAILGGILLDPEAISRVADILKPEHFAISAHQSIYRAT 61

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            +  ++ K      +   L +            Q+  AG      E     +        
Sbjct: 62  LTLHLQGKPTDLMTVTTWLADH----------NQLDAAGGQMKLAELVDRTISAVNIDQY 111

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           +L    + L RQ  +  +++AQ+  +   E   +L      +
Sbjct: 112 SLLVIDKFLRRQLIQAGQEVAQLGYQTNMELEKVLDQAEQRI 153


>gi|154503460|ref|ZP_02040520.1| hypothetical protein RUMGNA_01284 [Ruminococcus gnavus ATCC 29149]
 gi|153795560|gb|EDN77980.1| hypothetical protein RUMGNA_01284 [Ruminococcus gnavus ATCC 29149]
          Length = 447

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/153 (10%), Positives = 45/153 (29%), Gaps = 12/153 (7%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            ++    +  E A++  ++     +    + L    +  +    L+  +   F   K   
Sbjct: 6   KRILPHSTEAEQAVVGAMLMDKDAIMVAAEMLTGEDFYQSAYGMLFDAMVELFQAGKPVD 65

Query: 534 PEEIHQRLCERGFGELLKQLD----------RQVRDAGLWSATTEANIVDVRQGYQQAL- 582
              + + L E+     +  L+                       E   +       + + 
Sbjct: 66  LITLQEHLKEKNAPPEISGLEFARELLVNAQTSANIKYYAEIVREKATLRKMIKINEEIA 125

Query: 583 -ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
              Y   + L    +  EK+I ++   G +++ 
Sbjct: 126 NNCYLENQPLDVIMDAAEKRIFELAQHGNSQEY 158


>gi|149003766|ref|ZP_01828598.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|147758212|gb|EDK65214.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP14-BS69]
          Length = 320

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 60/160 (37%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 159 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSALYLGDYDYYIEK 218

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q++    +     A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 219 KVEVEM-SQIEEASTNNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 277

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 278 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 312


>gi|78045358|ref|YP_361608.1| replicative DNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78033862|emb|CAJ19861.1| DnaB-like helicase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 461

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 6/142 (4%)

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
           +D     QR     + + K+       E ++L  L+  P  L      L +  +   + +
Sbjct: 2   QDGGTKRQRGADGDVARLKIPPHSVEAEQSVLGGLMLAPETLDIVKDLLVEEDFYRRDHR 61

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            ++  +     + + +    +     E+G      QL+     A +    +         
Sbjct: 62  LIYRSICELDEKGQPYDAVTMGTWFEEQG------QLELVGNGAYMIELASTVPSAANIA 115

Query: 577 GYQQALALYKRFRLLSRQKEEI 598
           GY + +    R R L     EI
Sbjct: 116 GYAKIVRDRARLRELIEHGTEI 137


>gi|255080776|ref|XP_002503961.1| kinesin heavy chain [Micromonas sp. RCC299]
 gi|226519228|gb|ACO65219.1| kinesin heavy chain [Micromonas sp. RCC299]
          Length = 956

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 63/196 (32%), Gaps = 9/196 (4%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + ++  L +  +     +         N      +  S    + S++   L    S R  
Sbjct: 288 ERVKKTLSEGIRFSEATNINTSLLAFGNVMQALAEKRSHVPYRDSMLTKILESSLSGRSR 347

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             LL  +  P +     +    + + +  ++   + +         F P ++ + L E  
Sbjct: 348 TALLVCLA-PELEHSH-ETTTSLEFASRAMR--VTTVPVVHSANVEFDPADLTRELAEAA 403

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-----LSRQKEEIEK 600
               L+++  +V  +       +A   +        +   +  R      L R+  E E 
Sbjct: 404 SNSALQKMGEEVLSSRQMLDREKAERAEKEDHLCDLITRERAERADVEEKLRRRLAEAEA 463

Query: 601 QIAQVTAKGEAEKTAI 616
           +IA ++ K    KT  
Sbjct: 464 EIASLSIKLSDAKTEA 479


>gi|10440566|ref|NP_066300.1| leucine zipper putative tumor suppressor 1 [Homo sapiens]
 gi|46396556|sp|Q9Y250|LZTS1_HUMAN RecName: Full=Leucine zipper putative tumor suppressor 1; AltName:
           Full=F37/esophageal cancer-related gene-coding
           leucine-zipper motif; AltName: Full=Fez1
 gi|4572464|gb|AAD23834.1|AF123653_1 FEZ1 [Homo sapiens]
 gi|4572476|gb|AAD23840.1|AF123659_1 FEZ1 [Homo sapiens]
 gi|49901771|gb|AAH75006.1| Leucine zipper, putative tumor suppressor 1 [Homo sapiens]
 gi|49901992|gb|AAH75007.1| Leucine zipper, putative tumor suppressor 1 [Homo sapiens]
 gi|119584157|gb|EAW63753.1| leucine zipper, putative tumor suppressor 1, isoform CRA_b [Homo
           sapiens]
 gi|119584159|gb|EAW63755.1| leucine zipper, putative tumor suppressor 1, isoform CRA_b [Homo
           sapiens]
 gi|167774069|gb|ABZ92469.1| leucine zipper, putative tumor suppressor 1 [synthetic construct]
          Length = 596

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 81/250 (32%), Gaps = 29/250 (11%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  R +  + +   L    +         G   K   + +     SQR  Q   ++    
Sbjct: 279 KLQRSFEEKELASSLAYEERPRRCRDELEGPEPKGGNKLKQASQKSQRAQQVLHLQVLQL 338

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDN-NELQK--------------LWSFL 522
           ++   +    L +L+    +L+ + +     +      L++              L   L
Sbjct: 339 QQEKRQLRQELESLMKEQDLLETKLRSYEREKTSFGPALEETQWEVCQKSGEISLLKQQL 398

Query: 523 FSDFVE--QKYFLPEEIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
                E   K      +  +L +      G     + L+  +R  GL     E    +++
Sbjct: 399 KESQTEVNAKASEILGLKAQLKDTRGKLEGLELRTQDLEGALRTKGLELEVCE---NELQ 455

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIH-QI 631
           +   +A  L ++  LL ++ +E+  Q A     G     E    L   L  +  ++  + 
Sbjct: 456 RKKNEAELLREKVNLLEQELQELRAQAALARDMGPPTFPEDVPALQRELERLRAELREER 515

Query: 632 ESQEAMIEGF 641
           +  + M  GF
Sbjct: 516 QGHDQMSSGF 525


>gi|261405193|ref|YP_003241434.1| hypothetical protein GYMC10_1341 [Paenibacillus sp. Y412MC10]
 gi|261281656|gb|ACX63627.1| protein of unknown function DUF214 [Paenibacillus sp. Y412MC10]
          Length = 1104

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 89/295 (30%), Gaps = 43/295 (14%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                   K A E  +           + E + +      +  + +  L +    + D +
Sbjct: 232 YDEKISRHKEAVELALEAMPQERLAEIRAEGQKKLDEATHKIEDAKRQLADAEQELTDAR 291

Query: 420 LR-----YYYSQAIRDRLQQLFQKYI------TEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           L+       Y   +     +L Q          E S      K+N +  +Q     +  Q
Sbjct: 292 LKLNEGEQTYRDGVNKLQAELAQGQAKLDAAEQELSQGRAELKRNRQKLEQGRNQLKTGQ 351

Query: 469 SSLVKGKLSKKPSLREAALLLTLIN-----HPAIL--QEQYQELADIRYDNNELQKLWSF 521
           S L + K    P L +   L   +       P ++  +++ + L+  +  + +L  + + 
Sbjct: 352 SQLDQQKAELAPKLAQGQQLAKALQQISGLDPEVIPDEQRQELLSAAQSADPKLGAVAAG 411

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
                          + Q           + LD             +A+  +++ G    
Sbjct: 412 FMD-----GALDGAALRQ-----AASAFQRGLDEASLQLDQAKQKLDASEAELKDG---- 457

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                       +  E E+Q+AQ  A  +   T  L +   E   ++   +++ A
Sbjct: 458 ----------QAKLREAERQLAQGEASWKQG-TEELAAARREGEAKLANAKAELA 501


>gi|329955629|ref|ZP_08296537.1| hypothetical protein HMPREF9445_01386 [Bacteroides clarus YIT
          12056]
 gi|328526032|gb|EGF53056.1| hypothetical protein HMPREF9445_01386 [Bacteroides clarus YIT
          12056]
          Length = 318

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF---LSAL 80
          Y    ++  N      W   PF +E   SF  N  +  +Y F     G  +     L A 
Sbjct: 20 YSPVKQQGINL-----WYKSPFREETEASFKVNTEREQWYDFGLGKGGGIIELAAHLYAT 74

Query: 81 LGCSFIESVQRLAAI 95
              +I  ++R+A  
Sbjct: 75 DHVPYI--LKRIAKQ 87


>gi|325693981|gb|EGD35899.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis SK150]
          Length = 641

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 17/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 541

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++   +     L       +    ++  ++   L +R   L  Q E+++ QI+
Sbjct: 542 KAEQEALRE---ETEQTSLDKPDPANDYQLQKENQKEQRRLARRLEQLEAQIEDLDSQIS 598

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
           Q+    EA   A   + L E   QI Q+ +  +EAM+E
Sbjct: 599 QLQEAMEATNDA---AELMESQQQIDQLTAAQEEAMLE 633


>gi|163782453|ref|ZP_02177451.1| ATPase subunit of ATP-dependent protease [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882486|gb|EDP75992.1| ATPase subunit of ATP-dependent protease [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 1002

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-----LYKRFRLLSRQKEE 597
           ER    L +++ +   +                +  +Q L      L  + + L ++ EE
Sbjct: 548 ERKLKALDEEIMKANLEGDYEKEAQLKVQKAQLEKEKQELTEKLGGLDIKVKELKKKIEE 607

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           ++K+I +    G+ E+ A L      +  ++  +ESQ+A
Sbjct: 608 LDKEIMKAAESGDYEREAQLKIEKVNLEKELKALESQKA 646


>gi|325860168|ref|ZP_08173293.1| hypothetical protein HMPREF9303_0579 [Prevotella denticola CRIS
          18C-A]
 gi|325482255|gb|EGC85263.1| hypothetical protein HMPREF9303_0579 [Prevotella denticola CRIS
          18C-A]
          Length = 303

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 14/43 (32%)

Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75
               +     P   EK  SF  N     +Y F     G+ ++
Sbjct: 24 KQYGVNLMYLSPLRTEKHASFKVNTEINQWYDFGIGRGGNIIT 66


>gi|255575271|ref|XP_002528539.1| calmodulin binding protein, putative [Ricinus communis]
 gi|223532041|gb|EEF33851.1| calmodulin binding protein, putative [Ricinus communis]
          Length = 1261

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 96/298 (32%), Gaps = 12/298 (4%)

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             +      +GE+    ++ +      +   ++      L   +  N            E
Sbjct: 560 LHIFQFETKQGEEVCVALQTHINDVMLRRYSKARSTASGLVNGDLSNTFKPPN--VEAYE 617

Query: 406 IHLKNCINHIKDQKL-RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
             ++     I++ +       + + D+ +Q   K   E  G     +   ++  +    +
Sbjct: 618 KRVQELSKSIEESQKNTDRLLEDLHDKQRQEV-KLQEELEGLKDSLRFEKQNLAEVASDR 676

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLT-LINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
             ++S+  +   + + +LRE   +   L     ++ E   +   I  +N  L  L   L 
Sbjct: 677 DRLRSTCAEKDTALQAALREKRNMEIRLATLDNLVAEGNAKKDLIGTNNQVLHNLQDEL- 735

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QAL 582
                ++  + +E  +RL +     L +++ R  +         + N    R   + Q +
Sbjct: 736 -KLRNEELHVAKENMKRLTDEKVS-LEQKIIRLEKKKVEEMEFLQKNSEQERNTLKLQVI 793

Query: 583 ALYKRFRLLSRQKEEIEK--QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            L K+   ++R     +    I              L   L E+   I +   Q A I
Sbjct: 794 ELEKKLEGVTRDLASAKSTLAIRDADLATLQNNLKEL-EELREMKEDIDRKNEQTAAI 850


>gi|118431313|ref|NP_147686.2| putative ABC transporter, substrate binding protein [Aeropyrum
           pernix K1]
 gi|116062636|dbj|BAA80034.2| putative ABC transporter, substrate binding protein [Aeropyrum
           pernix K1]
          Length = 490

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 44/128 (34%), Gaps = 10/128 (7%)

Query: 515 LQKLWSFLFSDFVEQKYFLP--EEIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATT 567
              ++  L S   + +      EEI + L E           ++ +   +       +  
Sbjct: 26  FYAIYQELASLRSQVEGLNTRYEEISESLEEVQGAFESSRGDIESIASSLESIQDRVSKI 85

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVH 625
           E  +           A+ +    L++Q E+++ +I  +   G    E+   L   L ++ 
Sbjct: 86  EERLGSA-ATQSDLDAVARELASLTQQLEDLQARIQALEESGAEAGERLDQLAMALQDLQ 144

Query: 626 IQIHQIES 633
            ++  +E 
Sbjct: 145 ARLASLEE 152


>gi|332881187|ref|ZP_08448843.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680861|gb|EGJ53802.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 943

 Score = 46.4 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 101/341 (29%), Gaps = 21/341 (6%)

Query: 47  DEKTPSFHCNDSKGF----YYCFSCHVKG-DHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
           D+KT S H +         +  F    KG + + ++     C+  E+++ L A   VPLP
Sbjct: 46  DDKTGSCHIHQRNSTAPYTFTDFGVDSKGLNAIDYVQQRDHCTAFEALKTLCAAYSVPLP 105

Query: 102 VVDPKIEKKEKIQTDLIRL----IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMF 157
                  K          +    +  A  F H              L          +  
Sbjct: 106 NGAKIQPKVSFSSDVTEEVGTWSVTFADTFQHTKYLRRLFPYYTPELLNAYHFKEITDYT 165

Query: 158 KLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217
            +G         +       F      +   +      A   D+   +  F    S  ++
Sbjct: 166 TIGLNDKGNRYRKTTQSTPEFPIFGYDKGDFVKIYQPLAQKGDKLNPKHSFVGGKSGNRI 225

Query: 218 IAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILV 277
           +    R L   +        E +   K K L          +  +  ++       +I+ 
Sbjct: 226 VYGWDRLLRLVDYEAIKTLNEELKNTKSKEL----------RTELTAELNALKLDTVIIA 275

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTA-LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID 336
            G  D +++   G   +  +  T  +   + + L  L+  I    D D  G+R A +  D
Sbjct: 276 TGGSDGINIASLGYNVIWFNSETEIINAEEYQQLSLLARNIYYVPDLDATGVRQALQVAD 335

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
             +   +       +  +  +D   ++R +     + L   
Sbjct: 336 TFIDIRLVWL-PKELKENGKKDFADWLRLHHTAGQDALQSR 375


>gi|315641015|ref|ZP_07896098.1| hypothetical protein HMPREF9088_1423 [Enterococcus italicus DSM
           15952]
 gi|315483184|gb|EFU73697.1| hypothetical protein HMPREF9088_1423 [Enterococcus italicus DSM
           15952]
          Length = 621

 Score = 46.4 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 12/80 (15%)

Query: 45  FHDEKTPSFHCN--DSKGFY--YCFS-----CHVKGDHLSFLSALLGCSFIESVQRLAAI 95
           FH E  PS      +  G Y   CFS     C   G+ +S L   L  S IE V  L  +
Sbjct: 259 FHKEDNPSASVFYAEEHGIYLYKCFSASNKYC---GNIISLLERYLKISSIEVVNLLVEL 315

Query: 96  AGVPLPVVDPKIEKKEKIQT 115
            G  +       + K   Q 
Sbjct: 316 TGSTVTNTSQLGQSKFNAQK 335


>gi|257791923|ref|YP_003182529.1| hypothetical protein Elen_2177 [Eggerthella lenta DSM 2243]
 gi|257475820|gb|ACV56140.1| protein of unknown function DUF214 [Eggerthella lenta DSM 2243]
          Length = 1177

 Score = 46.4 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRY-------WKKNARHRDQKGPSQRLMQSSLVKGKL 476
               + DR++ L  +         +         K+     ++     +L  +       
Sbjct: 252 LVDEVADRIKALAPEREQARVDQLKSDAQKELDEKRADYEGERADAQSQLDDAKRQLDDA 311

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPE 535
           +   +  E  L      + +   E   + A  +   ++  +++         ++      
Sbjct: 312 AATIAASEQELADGQAAYDSGASELASQRASAQAQLDDAERQIADGQAQLDAQRPQLDDA 371

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
               +     + +    L     D    S   +A I   + G   A A   R   + +  
Sbjct: 372 AGQLQAARAQWQQGADALAAAWGDWQRRSDELDAGITRAQAGVADAAAGVDR---IQKGI 428

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + +E+QI Q+    +A+K A L +    +  Q   + +Q A+++
Sbjct: 429 DALEEQIKQLDPDKDAQKIAELRAEQDALKAQQQDLRAQMALVQ 472


>gi|134026278|gb|AAI34825.1| LOC100049141 protein [Xenopus laevis]
          Length = 624

 Score = 46.4 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 74/219 (33%), Gaps = 7/219 (3%)

Query: 419 KLRYYYSQAIRD--RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
             +  Y +  +    LQ    +   E  G         R   +     + +     + + 
Sbjct: 285 IWKKRYEEEHKRGLWLQGDLMRKTHEIEGLLEENHSEKRRIREMVKKLKDLLDGPTEDQT 344

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWSF-LFSDFVEQKYFLP 534
           +    ++   +LL+L      +Q   ++ L        +L+ L    L       ++   
Sbjct: 345 ATVDDIQTTDILLSLSRAVEQIQAIKEQKLKAQDLQEEKLKSLADVTLAGHHEATRHLQD 404

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E +  +  E      + +L+  + +  L  +  E     +     +   L ++   L+R+
Sbjct: 405 EVVAAKDRENVAQRRVAELEGHLENMRLVLSQFE-TRKRIDSTVVE--DLQEQINELTRE 461

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +EE+ K++ +        KT  L +  + +   +  ++ 
Sbjct: 462 REELLKRLQKQEENFYKSKTEELNNDQNTLQSNVRVLKE 500


>gi|301057437|ref|ZP_07198545.1| conserved domain protein [delta proteobacterium NaphS2]
 gi|300448460|gb|EFK12117.1| conserved domain protein [delta proteobacterium NaphS2]
          Length = 301

 Score = 46.4 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 31  KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80
           K +    + W   PF H+EK  S H + S+  +  FS    G  + F   +
Sbjct: 221 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREM 270


>gi|269792424|ref|YP_003317328.1| peptide chain release factor 2 [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100059|gb|ACZ19046.1| bacterial peptide chain release factor 2 (bRF- 2)
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 374

 Score = 46.4 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           E+   L   G    + +L  +V   G W      +  +V +   Q     + F  L R+ 
Sbjct: 19  ELRDSLDLEGLDRKIGELMERVSSDGFW---EREDSTEVARELSQLQQRRESFSALEREM 75

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           E++E     + A  + + +        E+  ++ + +
Sbjct: 76  EDLETLAELLQAGEDEDLSREFYDRAAEMERRLERTQ 112


>gi|241764691|ref|ZP_04762703.1| replicative DNA helicase [Acidovorax delafieldii 2AN]
 gi|241365861|gb|EER60510.1| replicative DNA helicase [Acidovorax delafieldii 2AN]
          Length = 472

 Score = 46.4 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 63/186 (33%), Gaps = 19/186 (10%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           +   +   + + ++       E+++L  L+            L D  +  +E Q +++ +
Sbjct: 14  APPSVDREIAQLRVPPHSIEAESSVLGGLLLDNNAWDRVGDLLVDSHFYRHEHQMIYAAI 73

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            +     K      + + L   G  +       L  L + V  A       E      R 
Sbjct: 74  GALINASKPADVITVFEHLQNLGKAQEMGGLAYLNSLAQYVPSASNIRRYAEIVRE--RA 131

Query: 577 GYQQALAL---------YKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVH 625
             ++ +             + + + R  +E E +I  +  +G   K     L +++ ++ 
Sbjct: 132 ILRKLVTASDDIATNAFNPQGKTVERILDEAEAKIFAIGEEGSRTKQGFQSLDTLVIDLL 191

Query: 626 IQIHQI 631
            ++ ++
Sbjct: 192 DRVQEM 197


>gi|160916097|ref|ZP_02078304.1| hypothetical protein EUBDOL_02124 [Eubacterium dolichum DSM 3991]
 gi|158431821|gb|EDP10110.1| hypothetical protein EUBDOL_02124 [Eubacterium dolichum DSM 3991]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/172 (10%), Positives = 52/172 (30%), Gaps = 20/172 (11%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWSFLFSDFVEQKYF 532
            +     +  E +LL  ++ +P++    Y + L    +  +  +++++ +       K  
Sbjct: 2   SRELPHSNEAEQSLLGAMMIYPSVAAIAYDQGLEAKDFYLDIHKRIYTAMQDISDAGKPI 61

Query: 533 LPEEIHQRLCERGFGELLKQLD-------------------RQVRDAGLWSATTEANIVD 573
               +  RL +     L+   D                     ++         E   + 
Sbjct: 62  DVTTLVSRLQDLEQLNLVGGADYIIKLSDTAISSANSSYYIEIIKSRAHLRRLIETAELI 121

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
              G+  A  L +      R+   + +       K   +  + ++  L ++ 
Sbjct: 122 AEDGFDTASDLDEVMDKAEREILNVTRSRRATDFKSSRDVVSNVMQELMKLR 173


>gi|156932391|ref|YP_001436307.1| hypothetical protein ESA_00167 [Cronobacter sakazakii ATCC BAA-894]
 gi|156530645|gb|ABU75471.1| hypothetical protein ESA_00167 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1110

 Score = 46.4 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 26/221 (11%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            +             KN   + Q   + +  Q++L + K S + + +   ++    N P 
Sbjct: 24  DEKQIAQELEQAKAAKNQPDQAQVVEALQAAQNALEERKASLERAKQYQEVID---NFPK 80

Query: 497 ILQEQYQELADIRYDNNELQ--------KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           + Q   Q+L ++   +   +         L   +     +      E   ++   R   +
Sbjct: 81  LSQSLRQQLNNL--RDEPRRVPTGLTTDALNQEILQVSSQLLEKSREAQQEQDRAREIAD 138

Query: 549 LLKQLDRQVRDAGLWSATTEA---------NIVDVRQGYQQALALYKRFRLLSRQKEEI- 598
            L QL +Q  DA       E           +   +   QQA +   + R+   +  ++ 
Sbjct: 139 SLSQLPQQQTDARRQLNEMERRAGAPTGSNALGAAQLLSQQAESSQLKARVDELELAQLS 198

Query: 599 ---EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +++A++ A+   +++  L + L  +  Q++    QEA
Sbjct: 199 ASNRQELARLRAELAQKQSEQLDAYLQALRNQLNSQRQQEA 239


>gi|54035818|sp|Q7X2S8|CLPB_MEIRU RecName: Full=Chaperone protein ClpB
 gi|31872394|gb|AAP59445.1| ClpB-like protein [Meiothermus ruber]
          Length = 854

 Score = 46.4 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 58/180 (32%), Gaps = 16/180 (8%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAI---------LQEQYQELADIRYDNNELQKL 518
            ++L + +  +K    E       ++ P++         ++E+Y+    +R  +  L   
Sbjct: 305 ATTLDEYREIEKDPALERRFQPVFVDEPSLEETVSILRGIKEKYEVHHGVRISDPALIAA 364

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                    ++K                   L+     +          E     +++  
Sbjct: 365 AQLSHRYIADRKLPDKAIDLVDEAAARLRMALESSPESIDALNRRKLQLEIEREALKK-- 422

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-----TAILISILHEVHIQIHQIES 633
           +       R   L ++  ++E++I +  A+ EAE+            L EV  QI Q E 
Sbjct: 423 ETDAESKFRLGELEKEIADLEEEIRKQQAEWEAEREIMQKLRAAQQRLDEVRTQIEQAER 482


>gi|325965071|ref|YP_004242977.1| hypothetical protein Asphe3_37470 [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323471158|gb|ADX74843.1| hypothetical protein Asphe3_37470 [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 779

 Score = 46.4 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 69/214 (32%), Gaps = 19/214 (8%)

Query: 432 LQQLFQKYITEHSGYGRYWKK-NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           L +L        S + +       +     G    L+Q+   +   +     ++  +   
Sbjct: 569 LDELTAALPGLESDFQQAQLAIMEQQAVVDGKKWELLQADAARSAANTAVEEKQGEIAAL 628

Query: 491 LINHPAI---LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           L   P +   L    Q ++D+  +   L +L   L              ++ ++  +   
Sbjct: 629 LGQLPELQKSLDVANQAVSDLSGEIARLNQLADSLVDKLT--------GLNSQITAKE-- 678

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
               ++           A  +    +V         L  + + L  Q    ++++  + A
Sbjct: 679 ---AEILSLQNRVAPLVAELDRLNGEVSAAEAHLAGLQSQLQGLDTQLTAAQEKLRDLQA 735

Query: 608 KGEAEKTAILISILH--EVHIQIHQIESQEAMIE 639
           + +  K+ +    L   ++  Q+  ++ Q A I+
Sbjct: 736 QKKPAKSLVEAQRLTVSDLQAQLGSVQQQIAAID 769


>gi|149751454|ref|XP_001492565.1| PREDICTED: similar to cingulin (predicted) [Equus caballus]
          Length = 1196

 Score = 46.4 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 86/245 (35%), Gaps = 38/245 (15%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            Q + +R +   Q+   E         +  R R      +  +     K K ++ P   +
Sbjct: 402 LQELLERRKGEAQQSTKELQNMKLLLDQGERVRHG---LETQVMELQDKLKQAQGPEPAK 458

Query: 485 AALLLTLINHPAILQEQYQ---ELAD-IRYDNNELQKLWSFLFSDFV----------EQK 530
             L+  L+    +LQE  +   ++ + +R    EL  L   L  +            +Q 
Sbjct: 459 QVLMKDLLETRELLQEVLEGKQQIEEQLRLRERELTALKGALKEEVASRDQEVEQVRQQY 518

Query: 531 YFLPEEIHQRLCERGFG----------------ELLKQLDRQVRDAGLWSATTEANIVDV 574
               E++ + + +                    EL ++L+    + G W +  + N  ++
Sbjct: 519 QRDTEQLRRSMQDATQDHATLEAERQKMSALVRELQRELEETSEETGHWQSMFQKNKEEL 578

Query: 575 RQGYQQALALYKRFRLLSRQKE----EIEKQIAQVT-AKGEAEKTAILISILHEVHIQIH 629
           R   Q+ L L      +  +       +++++ Q   + G+  +   L   L     ++ 
Sbjct: 579 RATKQELLQLRMEKEEMEEELGEKMEALQRELGQARASAGDVRQVEELKKELCRTQEELK 638

Query: 630 QIESQ 634
           +++++
Sbjct: 639 ELQAE 643



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 91/268 (33%), Gaps = 25/268 (9%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY--IT 441
              W  E E  S      + E +   +       D+       + +  RLQ L Q+     
Sbjct: 888  KEWASEAEKTSGGLSRLQDETQRLRQALQASQADRDTARLDKELLAQRLQGLEQEAETKK 947

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA--ALLLTLINHPAILQ 499
                      K    +  +  ++   + S V+    +    RE    L   L+   +  Q
Sbjct: 948  RSQDDRTRQLKGLEEKVSRLEAELDEERSTVELLTDRVNRGREQVDQLRTELMQERSARQ 1007

Query: 500  EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
            +   +   +   N +L+            + +  P     +L      EL ++L  + R+
Sbjct: 1008 DLECDKISLERQNKDLKS------RLASSEGFQKPSASLSQLESLN-RELQERLQAEERE 1060

Query: 560  AGLWSATTEANIVDVRQGYQQALA-----------LYKRFRLLSRQKEEIEKQIAQVTAK 608
              +  +T       V++   Q              L  R + L RQ +E E++I ++   
Sbjct: 1061 KTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSLRVKALKRQVDEAEEEIERLD-- 1118

Query: 609  GEAEKTAILISILHEVHIQIH-QIESQE 635
            G  +K    +   HEV+ Q+  +I++ E
Sbjct: 1119 GLRKKAQRELEEQHEVNEQLQARIKALE 1146


>gi|123967097|ref|YP_001012178.1| DnaB replicative helicase [Prochlorococcus marinus str. MIT 9515]
 gi|123201463|gb|ABM73071.1| DnaB replicative helicase [Prochlorococcus marinus str. MIT 9515]
          Length = 460

 Score = 46.4 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/199 (11%), Positives = 60/199 (30%), Gaps = 18/199 (9%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
             +    + +   SS   G +  +    E A+L  ++  P  +      +    +  N  
Sbjct: 7   PNNGSNKNFKKDYSSENAGLVPPQNIQAEEAILGGILLDPDAIGRIADLIKPEAFYINAH 66

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           Q ++        + K      +   L + G       L++   ++ L       +     
Sbjct: 67  QDIFKTALMLHTQGKPTDLTSMSAWLADNG------SLEKIGGNSKLVELVENVSSTASI 120

Query: 576 QGYQQALALYKRFRLLSRQKEEIEK----QIAQVTAKGEAEKTAILISILHEVHIQ---I 628
           +     ++     R L R   E+ +    Q  +     +  +       + E+  +    
Sbjct: 121 EQVANLISDKFIRRQLIRSGNEVIQLGFDQTQETNEVLDKAE-----QKIFEISQEKPTK 175

Query: 629 HQIESQEAMIEGFGKMSGR 647
              ++ E +   F ++  R
Sbjct: 176 GLTQAAEILTSTFNEIESR 194


>gi|331703238|ref|YP_004399925.1| transmembrane protein [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|331703319|ref|YP_004400006.1| transmembrane protein [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801793|emb|CBW53946.1| Hypothetical protein, predicted transmembrane protein (part of ICE)
           [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328801874|emb|CBW54027.1| Conserved hypothetical protein, predicted transmembrane protein
           (part of ICE) [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 911

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 92/232 (39%), Gaps = 15/232 (6%)

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
            N IK Q  R      + + ++QL Q      S      +   R  + +  + +    S+
Sbjct: 590 FNKIKSQLERDLV--RLSNEIKQL-QSSNKSLSTKSEELESTKRRIENELETIKKESLSI 646

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            K    K   + E     T+ N+  +L+ + +E+  I   NNEL +L +   S   E++ 
Sbjct: 647 NKQLEEKVREIDENK--QTISNYSQLLETRLKEIEKI---NNELSELQASNSSLEKEKQK 701

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              E    +       EL+K  ++++      S   +  + + +  Y   L+ +++    
Sbjct: 702 LNEEISSFKSESSSNKELIKSKEQELNKYKETSDKIKKQLEEKQNEYYDLLSKFQKQ--- 758

Query: 592 SRQKEEIEKQIAQVTAKGE----AEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++ +++++++A    K E      +   L   L +   ++   +S  A ++
Sbjct: 759 KQELDQLKQKLASTVDKSEINQLQSRIEELNQELDKKKKELAAFKSSLATLD 810


>gi|238897885|ref|YP_002923564.1| replicative DNA helicase; chromosome replication; chain elongation
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465642|gb|ACQ67416.1| replicative DNA helicase; chromosome replication; chain elongation
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 467

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/140 (10%), Positives = 45/140 (32%), Gaps = 3/140 (2%)

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +K  +  L    +   KL       E ++L  L+          + + +I + +   +++
Sbjct: 4   KKSQTTMLKDQQIEMLKLPPHSIEAEQSVLGGLMLDNERWDNVSERVGNIDFFSLPHRRI 63

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           +  +     +        +   L ++G    L+++      A L         +      
Sbjct: 64  FMAMQRLVQKNAPIDLVTLSDALEQKGD---LEKVGGFAYLAELAKNIPSTANISAYADI 120

Query: 579 QQALALYKRFRLLSRQKEEI 598
            +  A+ +    ++ +  + 
Sbjct: 121 VRERAIVREMLSVTHEIADA 140


>gi|217967474|ref|YP_002352980.1| trigger factor [Dictyoglomus turgidum DSM 6724]
 gi|217336573|gb|ACK42366.1| trigger factor [Dictyoglomus turgidum DSM 6724]
          Length = 431

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 59/202 (29%), Gaps = 19/202 (9%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           ++  F +   E    G+      + +      +   +  L K   S     RE       
Sbjct: 217 IEISFPEDFYEKELAGQSLPLKWKVKKIWRYEKPDQEIFLQKVNASSIEEFREKV----- 271

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-EIHQRLCERGFGELL 550
                 ++E+ ++L +         KL+S +    +E     P       L E    E L
Sbjct: 272 ---RESIKEEREKLEE--------DKLFSQILDKILENTELDPPLSYVHYLAENILREFL 320

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            +L+++      + +    +  +      +      +  ++  +  EIE           
Sbjct: 321 TELNKKGVQLEDYLSQRGISKDEFVNNVIEDARKRIKIEMILDKIAEIENINISDEEINN 380

Query: 611 --AEKTAILISILHEVHIQIHQ 630
              E          E+  ++ +
Sbjct: 381 VIKEIAENEGKEFKEIKRELER 402


>gi|289209092|ref|YP_003461158.1| replicative DNA helicase [Thioalkalivibrio sp. K90mix]
 gi|288944723|gb|ADC72422.1| replicative DNA helicase [Thioalkalivibrio sp. K90mix]
          Length = 461

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 50/168 (29%), Gaps = 10/168 (5%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
              + +      ++       E ++L  L+   A        + D  +  ++ + ++  +
Sbjct: 3   PPGMNRPMTPNPRIPPHSEEAEQSVLGGLMLDNAAWDRVADRITDEDFYRHDHRLIYRAV 62

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            S       F    + ++L          +L+     A L     E         Y   +
Sbjct: 63  ASLAERNAPFDMVTVSEQLERT------SELEDAGGMAYLGRLAAETPSAANIVAYADIV 116

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               R R + R    +  +IA      +   +  L+    +   +I +
Sbjct: 117 ----RERSILRSLISVGTEIADSAFVPDGRDSKELLDQAEQKVFRIAE 160


>gi|73973983|ref|XP_532255.2| PREDICTED: similar to myosin, heavy polypeptide 8, skeletal muscle,
           perinatal [Canis familiaris]
          Length = 1083

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 111/361 (30%), Gaps = 36/361 (9%)

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
            L  L   ++     +       Y+ +       +        ++ RG DP         
Sbjct: 630 CLLSLGCDVMARERSNFESYSMCYEHVLEHARQKLCQKEQELDIIRRGSDPPEDGAGQVA 689

Query: 369 TAFEKLIVE------SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-- 420
                +I+E       L  ++               +E   L   L     HIK++    
Sbjct: 690 ELSHNMIMEITALRARLTDLEEENLNLKHQIRKEVQEEYEALVQALFVTCLHIKEKLDEN 749

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-GPSQRLMQSSLVKGKLSKK 479
           +    Q + + + ++  + I       + W         K  P++  +Q+          
Sbjct: 750 QINLIQKVYELIGEVRTEGIDNLRSLKKKWGSARPDEGTKENPAKEQLQALEQDNSSLAV 809

Query: 480 PSLREAALLLTLIN-------------HPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
            + +  +L    +                  +Q + + L+       E       L +  
Sbjct: 810 LACKARSLGRWRLAAQQARFQGQLSRAEKEAMQRKKECLSIKLMAEQEAVLFRQQLLALR 869

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG--------LWSATTEANIVDVRQGY 578
                   + +  R  +    +LL++L  +V            + +++ E  + DV Q  
Sbjct: 870 QALARAQADNVRMRKQQDNQAQLLRELQHRVAQEAHHRQQMDLMKTSSMEKLLEDVEQKK 929

Query: 579 QQALALYKRFRLLSR----QKEEIEKQIAQVTAKGEAEKTAIL--ISILHEVHIQIHQIE 632
           Q    L +     S+    Q++ I++++ Q  ++   E++  L     L E+  Q++  E
Sbjct: 930 QHLQLLTEAAERASKLGQLQQKRIQRELRQTRSRLAQERSVKLDAFQRLEELQSQLNDAE 989

Query: 633 S 633
            
Sbjct: 990 R 990


>gi|56419334|ref|YP_146652.1| ATP-dependent Clp protease ATP-binding subunit [Geobacillus
           kaustophilus HTA426]
 gi|56379176|dbj|BAD75084.1| ATP-dependent Clp protease ATP-binding subunit [Geobacillus
           kaustophilus HTA426]
          Length = 862

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 72/208 (34%), Gaps = 16/208 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI +     R +++          +  +++    + ++     + + AL+   +   
Sbjct: 320 YRQYIEKDPALERRFQQVLVQEPTVEDTISILRGLKERYEVHHGVKIHDRALVAAAVLSD 379

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF--------G 547
             + +++     I   +     + + + S   E    +   +   + E            
Sbjct: 380 RYISDRFLPDKAIDLVDEACATIRTEMESMPSELDEVMRRVMQLEIEEAALSKETDEASR 439

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E L  L +++ D    +   +A     ++   +   L +      R+ EE E +      
Sbjct: 440 ERLAALQKELADLREKANAMKAQWQKEKEALDRVRRLREALERAKRELEEAENE------ 493

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQ 634
             +  K A L    + ++  Q+ Q+E +
Sbjct: 494 -YDLNKAAELRHGRIPQLEKQLKQLEQE 520


>gi|325288230|ref|YP_004264411.1| hypothetical protein Sgly_0035 [Syntrophobotulus glycolicus DSM
           8271]
 gi|324963631|gb|ADY54410.1| hypothetical protein Sgly_0035 [Syntrophobotulus glycolicus DSM
           8271]
          Length = 472

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 59/436 (13%), Positives = 118/436 (27%), Gaps = 73/436 (16%)

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           +Y  S    G  + F+    G +F E+V  L  + G    V  P  +KK++ +       
Sbjct: 53  WYDHSAESGGYAIDFVRQFYGLTFPEAVTML--LGGEQGEVYRPASQKKQEAKQPF---- 106

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
                    +L N        Y           E+                         
Sbjct: 107 ---------ALPNPHSDMRRVYAYLVKTRLIDREVVSYFAK------------------- 138

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET-I 240
               A LL +    +    +  +  +F      G       R L    +    N      
Sbjct: 139 ----AKLLYESCEKSKDSMKEYHNAVFVGYDENGVPRHAHKRGLYTEGTGFKGNVDSCDP 194

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS---LCQAGVQ---NV 294
            +                           +S+ + + E  +D+LS   L     +    V
Sbjct: 195 AYSFHHI---------------------GTSNHLYVFEAPIDLLSYITLHPNDWRNHSYV 233

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
                +     ++  L      +VLC D D+ G+ A+    +     LI         LS
Sbjct: 234 ALCGVSEYAMLKMLELHPNLNHVVLCLDHDEAGIEAS----EKYHDLLIEKCVSCDRDLS 289

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
             +D +  I+                L+     RE    S       +     L   +  
Sbjct: 290 IHKDWNEDIKANHGLPAIPAEEHPQHLIRDEICRELTETSMTVKSNCSA--NTLSALLVK 347

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
            +       +S  + + L+++ +  +   +   R    +      +       ++   +G
Sbjct: 348 ARSHLHWGQFSG-VDECLREMCRLSMAAAAREYRQMDHSRNLSTVQSRLHSGFRTYENRG 406

Query: 475 KLSKKPSLREAALLLT 490
            L  +  L E+ ++  
Sbjct: 407 HLKTRLDLLESDIMAL 422


>gi|315634390|ref|ZP_07889677.1| replicative DNA helicase DnaB [Aggregatibacter segnis ATCC 33393]
 gi|315476980|gb|EFU67725.1| replicative DNA helicase DnaB [Aggregatibacter segnis ATCC 33393]
          Length = 468

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 55/162 (33%), Gaps = 10/162 (6%)

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
               S  + + +     +       E A+L +++ +     +  + +    +   E + +
Sbjct: 2   ASKNSPPVKEQNTTNLNIPPHSIEAEQAVLGSILLNNMYWDDVAENVVKEDFYRFEHRLI 61

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           +  +     +Q       + Q L      E+++Q+      A L + T  A         
Sbjct: 62  FEEMEKLIAQQSPVDLITLEQALKS---REVIEQVGGFAYLAELSNNTPSAAN------- 111

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
             A A   R + + R+   +  +IAQ +   + +    L+  
Sbjct: 112 VVAYANVVREKAIMRELISVGNKIAQNSYSPKGQDVKHLLDE 153


>gi|301062731|ref|ZP_07203345.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300443166|gb|EFK07317.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 312

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 31  KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80
           K +    + W   PF H+EK  S H + S+  +  FS    G  + F   +
Sbjct: 172 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREM 221


>gi|195035221|ref|XP_001989076.1| GH11520 [Drosophila grimshawi]
 gi|193905076|gb|EDW03943.1| GH11520 [Drosophila grimshawi]
          Length = 1721

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 90/290 (31%), Gaps = 20/290 (6%)

Query: 358  DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
            D               L +    L+  +   E            A      +     +  
Sbjct: 898  DDAVVFVTMSDDENASLELRYQALLSDMSWNERAEALATLQAYVARHPGRAQELHQKLSS 957

Query: 418  QKLRYYYSQAI----RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
               R    + +      + +   ++ + +     +  +   R  D K   ++L++    K
Sbjct: 958  PSRRRSLQETLKKYQAKQGRAHQKRILLQQEKAAKLQQLFIRVEDVKAVKKQLIEDKRQK 1017

Query: 474  --GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQK 530
              G+L +    RE  L   +        ++ ++L +I +  N E Q     L        
Sbjct: 1018 MEGRLQRAAENREIYLRQII----EKAHDEDKKLKEINFIKNIEAQNKRLDLMESVK--- 1070

Query: 531  YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                E   Q L +     + ++  ++        A  +  ++ + +  +  L   +R   
Sbjct: 1071 --DAEGRLQELEQERQKRVEEKAAKEAAVERRRQALEKERLLKLEKMNETRLEKEQRIGK 1128

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAILISILH----EVHIQIHQIESQEA 636
            +  QKE   + +A+  A+   E+   L         E+  +I Q + + A
Sbjct: 1129 MQEQKERQRQALAREKARDREERLLALQVQKQQTTEELQRKILQKQLESA 1178


>gi|332860509|ref|XP_003317459.1| PREDICTED: dystrophin-like isoform 4 [Pan troglodytes]
          Length = 1243

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 69  ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 124

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
            +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 125 WLEAKEEAEQVLGQARAKLESWKEGPYTIDAIQKKITETKQLAKDLRQWQINVDVANDLA 184

Query: 323 ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                     D   +    + I+     +          L                 F  
Sbjct: 185 LKLLRDYSADDTRKVHMITENINASWGSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 243

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 244 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDAYHNLDENSQKIL 303

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
           +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 304 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 363

Query: 493 NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
               + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 364 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 422

Query: 550 -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 423 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 482

Query: 609 GEA 611
            + 
Sbjct: 483 TDE 485


>gi|304312029|ref|YP_003811627.1| Replicative DNA helicase [gamma proteobacterium HdN1]
 gi|301797762|emb|CBL45984.1| Replicative DNA helicase [gamma proteobacterium HdN1]
          Length = 464

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 10/146 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K+       E A++  L+       +  + +A++ +   E + ++  +     E   F  
Sbjct: 20  KVPPHSLEAEQAVIGGLMLDNQAFDDVSELVAEVDFYRREHRLIFRAIAQLSQENHPFDV 79

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L +             + DAG      E           +A A   R R + RQ
Sbjct: 80  ITLGEALVKSA----------ALEDAGGMKYLAEVARNTPSASNIRAYAAIVRERSVLRQ 129

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISI 620
              +  +IA+     +    + L+  
Sbjct: 130 MVRVANEIAESAFNPKGRSASELLDE 155


>gi|296132448|ref|YP_003639695.1| ATP-dependent chaperone ClpB [Thermincola sp. JR]
 gi|296031026|gb|ADG81794.1| ATP-dependent chaperone ClpB [Thermincola potens JR]
          Length = 868

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/209 (8%), Positives = 72/209 (34%), Gaps = 14/209 (6%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++K++ + +   R ++    +      +  +++    + ++     ++++A++   +   
Sbjct: 320 YRKHVEKDAALERRFQPVLVNPPSVEDTISILRGLKERYEVHHGVRIKDSAIVAAAVLSD 379

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    ++ + + S   E        +   + E    +   +  +
Sbjct: 380 RYISDRFLPDKAIDLMDEAAARIRTEIDSLPTELDEITRRIMQMEIEEAALSKEKDEASQ 439

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           +  +          +  D  +   +        +    +  EI+K+I +   + E  +  
Sbjct: 440 ERLEKLRSQLAELRSEADAMKAQWEV------EKQAISRLREIKKEIEETRQEIERAERE 493

Query: 616 ILISILHEVH--------IQIHQIESQEA 636
             ++ L E+          Q+ + E   A
Sbjct: 494 YDLNRLAELRYGKLANLERQLKEEEETLA 522


>gi|58268486|ref|XP_571399.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57227634|gb|AAW44092.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1572

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 83/274 (30%), Gaps = 36/274 (13%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
                     +  E    L       +D+  R    Q I  R      +  ++       
Sbjct: 581 IHKHLNEMNKQLLETNAELAREAEAWRDEVER---LQDILHRAGIDADEDASQTGARSNR 637

Query: 450 WKKNARHRDQKGPSQRLMQSSL-------------VKGKLSKKPSLREAALLLTLI--NH 494
               +  R    P +R    +              ++   S  PS     LL  L     
Sbjct: 638 SVSQSHSRQLPAPPRRSPSRTPGSRDHSEIISQLSMRSGQSASPSKNAQDLLDGLSPEER 697

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIHQRLCERGFGELLK 551
            A++QE  + L  +  + N  +++ + L        + +    + +H ++ E      L+
Sbjct: 698 AAVIQEMAERLESLEEEMNTREEVIAELQDKLEYAHQSQSPDVQSLHAQIEE--LARQLE 755

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------- 604
           + ++      L S  ++       +  +       + + L +      ++  +       
Sbjct: 756 ETEQ--ARVDLQSEFSKKTEDHAAKFTEICSGFESQVKSLEKDLASAREEADRLRAERTR 813

Query: 605 ----VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                  +G +E+   L   + E+ +++  I+ Q
Sbjct: 814 LEGLAEKEGSSEREEELRKQVREMEVELEAIKGQ 847



 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/277 (9%), Positives = 87/277 (31%), Gaps = 15/277 (5%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--SQAIRDRL 432
              +  + +M  + E+     NT +E            +  +   ++  +   + +  +L
Sbjct: 695 EERAAVIQEMAERLESLEEEMNTREEVIAELQDKLEYAHQSQSPDVQSLHAQIEELARQL 754

Query: 433 QQLFQKYITEHSGYGRYWKKNARHR----DQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           ++  Q  +   S + +  + +A              + ++  L   +        E   L
Sbjct: 755 EETEQARVDLQSEFSKKTEDHAAKFTEICSGFESQVKSLEKDLASAREEADRLRAERTRL 814

Query: 489 LTLI-------NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             L            + ++  +   ++     + + +         + +    E+     
Sbjct: 815 EGLAEKEGSSEREEELRKQVREMEVELEAIKGQAKDMHEETEELRGKIQLLNKEKEEATK 874

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                   +++  +  +D+   +   E ++  +    ++A            Q E+  +Q
Sbjct: 875 KFEDAERRVEEHQKLHQDSEHRAERAENDLETLSAELKEASNAQLAADEKLAQYEKELEQ 934

Query: 602 IAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEA 636
           + Q+  + E   ++    I  L+ +  Q+   + + A
Sbjct: 935 LDQLHEEKEKQLDQQQNEIQELNRLVQQLEAAQEKAA 971



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/269 (10%), Positives = 76/269 (28%), Gaps = 21/269 (7%)

Query: 370  AFEKLIVESLPLVDML-----WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              E +  ++  + +         +           +  + E  ++      +D + R   
Sbjct: 840  ELEAIKGQAKDMHEETEELRGKIQLLNKEKEEATKKFEDAERRVEEHQKLHQDSEHR--- 896

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                 +R +   +    E                Q       +     + +        E
Sbjct: 897  ----AERAENDLETLSAELKEASNAQLAADEKLAQYEKELEQLDQLHEEKEKQLDQQQNE 952

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD--FVEQKYFLPEEIHQRLC 542
               L  L+      QE+    A+  +   EL+++   L      +E K     ++  +L 
Sbjct: 953  IQELNRLVQQLEAAQEKA---AENEWVKEELERVQKELEDVHKLLEDKEIQLGDLRGKLE 1009

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                 + L    R+       ++    +    +  +   +AL  R     R+   ++++I
Sbjct: 1010 VAEASKDLTSSQRRSPSGTSSTSDRGEDGHVAQNSFV--IALEDRLDEAYREIGRLKREI 1067

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIHQI 631
                 +  A +     + +  +  +   +
Sbjct: 1068 NTTPHRKSAIEVRD--ARIQALEREKAAL 1094



 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 86/299 (28%), Gaps = 34/299 (11%)

Query: 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF---EKLIVESL 379
            +      + +        +I   +       + + PD               +   ++ 
Sbjct: 702 QEMAERLESLEEEMNTREEVIAELQDKLEYAHQSQSPDVQSLHAQIEELARQLEETEQAR 761

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
             +   + ++TE+ +    +  +  E  +K+    +          +   DRL+    + 
Sbjct: 762 VDLQSEFSKKTEDHAAKFTEICSGFESQVKSLEKDLASA-------REEADRLRAERTRL 814

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
                  G   ++    +  +     L         + ++        +  L        
Sbjct: 815 EGLAEKEGSSEREEELRKQVREMEVELEAIKGQAKDMHEETEEL-RGKIQLLNKEKEEAT 873

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL---------- 549
           +++++         E QKL         E+     E +   L E    +L          
Sbjct: 874 KKFEDAER---RVEEHQKLHQD-SEHRAERAENDLETLSAELKEASNAQLAADEKLAQYE 929

Query: 550 --LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-------FRLLSRQKEEIE 599
             L+QLD+   +        +  I ++ +  QQ  A  ++          L R ++E+E
Sbjct: 930 KELEQLDQLHEEKEKQLDQQQNEIQELNRLVQQLEAAQEKAAENEWVKEELERVQKELE 988


>gi|327294169|ref|XP_003231780.1| hypothetical protein TERG_07399 [Trichophyton rubrum CBS 118892]
 gi|326465725|gb|EGD91178.1| hypothetical protein TERG_07399 [Trichophyton rubrum CBS 118892]
          Length = 1097

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 13/128 (10%)

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
           L++L   L     E +    +       E+ + +LL++L+ Q  D        +    D+
Sbjct: 235 LKQLAERLKVLQQENESLDKQLCQ---EEKEYEQLLRELEDQRNDLKQRVKEKDDATGDL 291

Query: 575 RQGYQQALALY--------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           R+   +  ++         KR +LL +  +E E++  +       E+ + +   L  +  
Sbjct: 292 RKHINKLESINRTVQNEKSKREKLLQQ--KEAERKKRREDIVRWDERESEIKDELDNLQK 349

Query: 627 QIHQIESQ 634
           +  +I+ +
Sbjct: 350 EKARIDEE 357



 Score = 44.1 bits (102), Expect = 0.066,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 65/224 (29%), Gaps = 14/224 (6%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +   L   Y       +         E SG     K++   R   G +            
Sbjct: 163 RGPPLIQAYVPKAAAIVSPSAPVMSREQSGGAAQAKRSGGGRRSIGSTFVQDSGGPQMLD 222

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN-ELQKLWSFLFSDFVEQKYFLP 534
             +         L  L     +LQ++ + L         E ++L   L            
Sbjct: 223 DGEAAGGEYEGSLKQLAERLKVLQQENESLDKQLCQEEKEYEQLLRELEDQ--------R 274

Query: 535 EEIHQRLCERG-----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
            ++ QR+ E+        + + +L+   R      +  E  +       ++      R+ 
Sbjct: 275 NDLKQRVKEKDDATGDLRKHINKLESINRTVQNEKSKREKLLQQKEAERKKRREDIVRWD 334

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
               + ++    + +  A+ + E T  L     ++  +  +++ 
Sbjct: 335 ERESEIKDELDNLQKEKARIDEESTTKLEEYRRKITEEQGEMKQ 378


>gi|301059512|ref|ZP_07200425.1| integrase core domain protein [delta proteobacterium NaphS2]
 gi|300446407|gb|EFK10259.1| integrase core domain protein [delta proteobacterium NaphS2]
          Length = 670

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 31  KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80
           K +    + W   PF H+EK  S H + S+  +  FS    G  + F   +
Sbjct: 561 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREM 610


>gi|301061242|ref|ZP_07202024.1| integrase core domain protein [delta proteobacterium NaphS2]
 gi|300444561|gb|EFK08544.1| integrase core domain protein [delta proteobacterium NaphS2]
          Length = 659

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 31  KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80
           K +    + W   PF H+EK  S H + S+  +  FS    G  + F   +
Sbjct: 561 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREM 610


>gi|257460386|ref|ZP_05625487.1| replicative DNA helicase [Campylobacter gracilis RM3268]
 gi|257441717|gb|EEV16859.1| replicative DNA helicase [Campylobacter gracilis RM3268]
          Length = 692

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/159 (10%), Positives = 49/159 (30%), Gaps = 7/159 (4%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A+L +L+ +     E  + ++   +       ++  +       +   P  + + L E
Sbjct: 17  ERAILSSLLQNEDAYGELSEIISVGDFFYKPHADIYEAIVKCSSHNEPIAPSFVKKWLAE 76

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-------LALYKRFRLLSRQKE 596
           R       ++              E     +++   +        +    R +  + +  
Sbjct: 77  RYDDGAFTEVVATSGVVDAPKYALELREKSIKRSLIKVAHEIPSMVNEAVRSKDTADKIS 136

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
               ++      G  +K+  +I+ + E   +   +   E
Sbjct: 137 SKIYELIDEERHGGIKKSHEIIADVVEELKRQKALAGSE 175


>gi|158287493|ref|XP_564385.3| AGAP011138-PA [Anopheles gambiae str. PEST]
 gi|157019677|gb|EAL41598.3| AGAP011138-PA [Anopheles gambiae str. PEST]
          Length = 1909

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 40/318 (12%), Positives = 97/318 (30%), Gaps = 20/318 (6%)

Query: 336  DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
            ++                   E  +   +       +  +  SL       ++E + R  
Sbjct: 1493 EIAQLKRQKNELDRRCKEQDEELDEMAGQIQLLEQAKLRLEMSLETSRKEARKEAQQRDD 1552

Query: 396  NTPDERAELEIHLKNCINHIKDQKL-RYYYSQ---AIRDRLQQLFQKYITEHSGYGRYWK 451
               + R      +K+    ++ +   R    +    +  +L  L  +   E +      +
Sbjct: 1553 EMEEIRGASYKKIKSLECQLEQEHEERTQLLRDKHELERKLASLEDQDRAERAAEEAMVQ 1612

Query: 452  KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
            +  R   +     R  QS L + K           L   L +  +      +    +  +
Sbjct: 1613 RLKRDARKYRALLRDAQSQLDRAKGDSASKALVRQLRNQLEDAESARVAALKARQVLEGE 1672

Query: 512  NNELQKLWSFLFSDFVEQKYF------LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
              + Q L+        E +           E+  ++ E    E + +L ++   A +   
Sbjct: 1673 LQDAQLLFEETQRARNEAEDRATVAQRDRAELQAQIDEN--EEEMAELMKKYS-ATVKQL 1729

Query: 566  TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL---- 621
            ++E ++  + +   +   L    + L  Q  E+  ++  V   GE   +      L    
Sbjct: 1730 SSEQSL--IAEYELRVSELEGEKKSLKEQVVELATRLESVETIGEPSNSMA-FKRLELRT 1786

Query: 622  HEVHIQIHQIESQEAMIE 639
             E+  ++   ++  A IE
Sbjct: 1787 KELESRLEFEQATRARIE 1804



 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/289 (10%), Positives = 88/289 (30%), Gaps = 16/289 (5%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
             +       ++    +   +    KR+         D +++L+    +  +    ++LR 
Sbjct: 1591 RKLASLEDQDRAERAAEEAMVQRLKRDARKYRALLRDAQSQLDRAKGDSASKALVRQLRN 1650

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                A   R+  L  + + E              R +     R   +   + +L  +   
Sbjct: 1651 QLEDAESARVAALKARQVLEGELQDAQLLFEETQRARNEAEDRATVAQRDRAELQAQIDE 1710

Query: 483  REAALLLTLINHPAILQEQYQE---LADIRYDNNEL----QKLWSFLFSDFVE------- 528
             E  +   +  + A +++   E   +A+     +EL    + L   +             
Sbjct: 1711 NEEEMAELMKKYSATVKQLSSEQSLIAEYELRVSELEGEKKSLKEQVVELATRLESVETI 1770

Query: 529  -QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
             +           L  +     L+          +  A  + ++  ++    QA     +
Sbjct: 1771 GEPSNSMAFKRLELRTKELESRLEFEQATRARIEIQLARHKDSLEKLQGELSQARNREAQ 1830

Query: 588  FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             +   ++ ++  +++ +      A +    +    E+  +I   ES+ A
Sbjct: 1831 AQDALKKGQKTVREL-RDELSTLANRDQEGLLKRKELEKRIETAESETA 1878


>gi|320170630|gb|EFW47529.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 989

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 65/198 (32%), Gaps = 14/198 (7%)

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
           N         +     S     +L +  S RE  L+   I H  +L+     L      +
Sbjct: 316 NTTVYTSANTTVSDPSSQPETTRLLRVISERERKLVSLSIEHTQLLEAH-DLLKSEH--D 372

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEAN 570
              ++L S + +          EE+   + E+     ELL + ++  +   + +   +  
Sbjct: 373 QVRKELASAMTAAPSSGGSRKEEELLAAIREKEVQISELLAEGEKLSKRELVLNTNIKKL 432

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG-EAEKTAILISIL-------- 621
               +    +  A   +   L      +  Q+ ++  K  + + +   ++ L        
Sbjct: 433 NAKCKAAETETTAAKGQVAELESVLTTLRTQVVELQRKEIDYQDSLAKVNTLSDAQGKEA 492

Query: 622 HEVHIQIHQIESQEAMIE 639
           H +   + +   + A I+
Sbjct: 493 HALRKDLEKAREENAGIK 510


>gi|288926421|ref|ZP_06420342.1| mobilizable transposon, excision protein [Prevotella buccae D17]
 gi|288336794|gb|EFC75159.1| mobilizable transposon, excision protein [Prevotella buccae D17]
          Length = 311

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 14/40 (35%)

Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLG 82
           PF +E   SF  N     +Y F     G  ++    L  
Sbjct: 34 SPFRNETQASFKVNTKLNLWYDFGLGKGGSIIALAEELYH 73


>gi|258648359|ref|ZP_05735828.1| replicative DNA helicase [Prevotella tannerae ATCC 51259]
 gi|260851526|gb|EEX71395.1| replicative DNA helicase [Prevotella tannerae ATCC 51259]
          Length = 517

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 63/206 (30%), Gaps = 16/206 (7%)

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
                + +     +        G L  +    E A+L +L+          + L    + 
Sbjct: 2   PEQSTKRKPRKVAKQAPLEDDFGHLQPQDIKMEQAILGSLMIEKEAYDRVSEILKPAVFY 61

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG-------------FGELLKQLDRQVR 558
           NN  Q ++  +     E+K      + ++L  +G                ++        
Sbjct: 62  NNSHQLIFEAIRDLEAEEKPVDFLTVTEKLDRKGQLEDIGGAFYITQLSSMVSSTAHLEY 121

Query: 559 DAGLWS--ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
            A + +  AT    I       Q+A         L ++ E    Q++Q   K +  +   
Sbjct: 122 YAHIIAQKATARELIAYASDIQQKAFDATTDVDELMQEAEGALFQLSQENLKKDYTQINP 181

Query: 617 LISILHE-VHIQIHQIESQEAMIEGF 641
           ++   +E +     + +    +  GF
Sbjct: 182 VVDEAYEMLKKAAARSDGLSGLSSGF 207


>gi|308234043|ref|ZP_07664780.1| replicative DNA helicase [Atopobium vaginae DSM 15829]
 gi|328943440|ref|ZP_08240905.1| replicative DNA helicase DnaB [Atopobium vaginae DSM 15829]
 gi|327491409|gb|EGF23183.1| replicative DNA helicase DnaB [Atopobium vaginae DSM 15829]
          Length = 471

 Score = 46.4 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 59/191 (30%), Gaps = 12/191 (6%)

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
           ++  Q     + + +         + S  E ++L  ++    +LQE    L    +    
Sbjct: 8   QNYAQNEQQSQNLGALDPTQVRMPQDSDAEKSILSAMLLSDDVLQECLMRLRVDDFYLQS 67

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL----KQLDRQVRDAGLWSATTEAN 570
            + +++ + +   +     P  +   L  +   + +      L+       L S      
Sbjct: 68  HKMIFNAICALAEQGHQADPISVADYLKTQNQLDKIGGSSTLLELNENTFSLTSWEHHIE 127

Query: 571 IVDVRQGYQQALALYKRFRLL--------SRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
           I+      +  +      + L            +  E  +  VT K      + L  ++ 
Sbjct: 128 ILRKNATLRAIIHASANIQKLAFSAPEDTKEVVDSAENMLLDVTNKEVTSNFSQLSDLMA 187

Query: 623 EVHIQIHQIES 633
           +++  +  ++ 
Sbjct: 188 DLYNDLSDMQE 198


>gi|332860511|ref|XP_003317460.1| PREDICTED: dystrophin-like isoform 5 [Pan troglodytes]
          Length = 1225

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 69  ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 124

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
            +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 125 WLEAKEEAEQVLGQARAKLESWKEGPYTIDAIQKKITETKQLAKDLRQWQINVDVANDLA 184

Query: 323 ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                     D   +    + I+     +          L                 F  
Sbjct: 185 LKLLRDYSADDTRKVHMITENINASWGSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 243

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 244 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDAYHNLDENSQKIL 303

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
           +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 304 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 363

Query: 493 NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
               + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 364 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 422

Query: 550 -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 423 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 482

Query: 609 GEA 611
            + 
Sbjct: 483 TDE 485


>gi|325264634|ref|ZP_08131364.1| replicative DNA helicase [Clostridium sp. D5]
 gi|324030296|gb|EGB91581.1| replicative DNA helicase [Clostridium sp. D5]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/125 (10%), Positives = 40/125 (32%), Gaps = 3/125 (2%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            ++    +  E A++  ++ +   +    + +    +       L+  +   F   K   
Sbjct: 8   KRILPHSAEAEQAVVGAMLMNKDAIMSASEIITGEDFYQTAYGILFDSMVELFQAGKPVD 67

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L E+     +  L+       L ++   +  V       Q  +  +R   ++ 
Sbjct: 68  LITLQEHLKEKDVPPEISSLE---FARDLIASVQTSANVKFYAEIVQEKSTLRRLIKVNE 124

Query: 594 QKEEI 598
           +   I
Sbjct: 125 EVANI 129


>gi|315607611|ref|ZP_07882606.1| toprim domain protein [Prevotella buccae ATCC 33574]
 gi|315250794|gb|EFU30788.1| toprim domain protein [Prevotella buccae ATCC 33574]
          Length = 341

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 98/355 (27%), Gaps = 69/355 (19%)

Query: 44  PFHDEKTPSFHCNDSKGFY-------YCFS----CHVKGDHLSFLSALLGC----SFIES 88
           PF ++  PS H   ++G Y         F     C   G+  + +  L       +F E 
Sbjct: 34  PFREDSRPSCHLYANRGGYGNGQYYLQDFGDSSFC---GNCFTIVGRLCNINPKTNFREV 90

Query: 89  VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148
           +Q +    G+ +       E++ +                H+ L   +      Y     
Sbjct: 91  LQVIDRDLGLGI-----FDEQRSE----------------HNVLMKRKATPSQKYKCSSI 129

Query: 149 IDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208
                +    + +  +        L        K I +                      
Sbjct: 130 ASFEVVTQPFMPWEEEYWGQYGIGLSTLERYNVKSISS---------------------C 168

Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG---KNLYNFFGALNYLQKSIRKD 265
             + S G   A  G          + +     ++      + +Y       Y+     ++
Sbjct: 169 TFKKSSGGNFAVYGSKAIPTYGYFFDDGRRLKIYRPKAKTRFMYAGHFPKPYI---FGRE 225

Query: 266 VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKLSPRIVLCFDGD 324
                 + + +  G  DV+SL   G   +  +     + E  +  L +   RI+  +D D
Sbjct: 226 QLPEEGALVFVTGGEKDVMSLSAHGFPALTFNSETANIPEDVMDKLSQRFRRIIFLYDTD 285

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVL-LSRGEDPDSFIR-CYGKTAFEKLIVE 377
           + G R +   I               +      +D   F R  +     + +I +
Sbjct: 286 ETGQRESALRIQQYGEKYNVQKLDLPLSGEKSEKDISDFFRLGHTAEELQAMIEK 340


>gi|49257800|gb|AAH74587.1| dctn1 protein [Xenopus (Silurana) tropicalis]
          Length = 797

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 118/361 (32%), Gaps = 36/361 (9%)

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFD---GDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
            V+ L       +   L      +    +         +A  K ++     L        
Sbjct: 168 PVAPLPGPGPTKEEENLRAQVKDLDEKLETLKMKRAEDKAKLKELEKSKLQLEQLQEWKS 227

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            +  +  D    ++   K A E L  +   + +M    +    +    +   E    L+ 
Sbjct: 228 KMQEQQADVQRQLKEAKKEAKEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQ 287

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++ +KD+           + L+   + +  E    G     ++    Q       ++ +
Sbjct: 288 EVDTLKDKV----------EELKIDLEIFKHEIEEKGSDGAASSYQVKQLEEQNARLKEA 337

Query: 471 LVKGKLSKKPSLREAALLLTLIN----HPAILQEQYQEL-ADIRYDNNELQKLWSFLFSD 525
           LV+ +       +E   +   +         L++Q ++L  +       + +L   + + 
Sbjct: 338 LVRMRDLSASEKQEHVKVQKQMEKKNTELDTLRQQKEKLQEEASLMEKTIDELKEQVDAA 397

Query: 526 FVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                    EE+ + L ER     E +++L   V D    +   +    + R+     L 
Sbjct: 398 LGA------EEMVETLTERNLDLEEKVRELRETVSDLEAINEMNDELQENARET---ELE 448

Query: 584 LYKRFRLLSRQKEEIEKQIAQV-TAKGEAE----KTAILISILHEVHIQIHQIESQEAMI 638
           L ++  +   +  E EK++        + +    K   L + L EV+ ++     QEA +
Sbjct: 449 LREQLDMAGARVREAEKRVEAAQETVADYQQTIKKYRDLTAHLQEVNRELR--NQQEASV 506

Query: 639 E 639
           E
Sbjct: 507 E 507


>gi|313227586|emb|CBY22733.1| unnamed protein product [Oikopleura dioica]
          Length = 6995

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 87/273 (31%), Gaps = 29/273 (10%)

Query: 387  KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
              E ++    + +E A  +   +N      D+ ++ +  +     L         +    
Sbjct: 6308 NEELKDNMLKSAEEEARRQALEENLDPSDADKLIQEHLRK--AQDLYDSEALKKQQERDA 6365

Query: 447  GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY---- 502
             R   K+         +         +  +++    RE A +      PA +        
Sbjct: 6366 LRQRMKDLAALKAAKRAAEAAAKRKREEDIAR--ENREFAKIADEATDPAEIYRIMAKRH 6423

Query: 503  ----QELADIRYDNNELQKL--WSFLFSDF--VEQKYFLPEEIHQRLCERGFGELLKQLD 554
                ++L  + + + E+ KL   + +  +   + Q    PEE+ +   +     LL +  
Sbjct: 6424 AREMEDLERVFFSDQEMAKLEKQNKIREERMKLRQNITDPEELARF--DAETKRLLSEAA 6481

Query: 555  RQVRDAGLWSATTE--------ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            +   +  L     +          + D  +      A+       +++K EIEK   +  
Sbjct: 6482 KITPEDQLELIRRKNKLKERQMKEVQDALEKLSPEYAMKLDAEREAQKKAEIEKASRE-- 6539

Query: 607  AKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             +        +     E   ++ Q+E+++   +
Sbjct: 6540 -EAAKAMALEIERQKKEKLRRLEQLEAEQRRKD 6571


>gi|7670454|dbj|BAA95078.1| unnamed protein product [Mus musculus]
          Length = 762

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/283 (10%), Positives = 93/283 (32%), Gaps = 17/283 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + E + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 186 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 245

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q   ++        ++  ++   +   +          KL +     +           
Sbjct: 246 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRT 305

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF---LPEEIHQRLCERGFGELLKQ 552
            +   + +   +      +  ++         ++        E + ++L        L  
Sbjct: 306 ELFDLKTKYDEENYLQRPDEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLAS 365

Query: 553 LDRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQ 601
             ++               +  A  E  I  + +  Q+  A   + R  S  Q  ++E+Q
Sbjct: 366 QIQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQ 425

Query: 602 IAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           +    +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 426 LNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 468


>gi|218248836|ref|YP_002374207.1| replicative DNA helicase [Cyanothece sp. PCC 8801]
 gi|218169314|gb|ACK68051.1| replicative DNA helicase [Cyanothece sp. PCC 8801]
          Length = 444

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/174 (10%), Positives = 52/174 (29%), Gaps = 12/174 (6%)

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           L  +    E ++L  ++     +      +    +     + ++      + + K     
Sbjct: 7   LPPQNIEAEESILGGILLDREAMGRVADLITPDAFYVQAHKDIYEAALKLYAQGKPTDFL 66

Query: 536 EIHQRLCE----------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +   L +              +LL      V      +   +  +          +   
Sbjct: 67  TVKSILEDHQLLEKVGGTDKLNQLLDSTVAAVNIDRYAALVMDKYLRRQLISAGHEITEL 126

Query: 586 --KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
             +  + L +  +E EK+I  +T K   E    +   L + + ++ +   + A+
Sbjct: 127 GFETTKELEQVLDESEKKIFSLTQKRPQEGLIPIADTLVQTYSELEKRHQKTAL 180


>gi|163840102|ref|YP_001624507.1| peptide chain release factor 2 [Renibacterium salmoninarum ATCC
           33209]
 gi|229470354|sp|A9WPT6|RF2_RENSM RecName: Full=Peptide chain release factor 2; Short=RF-2
 gi|162953578|gb|ABY23093.1| peptide chain release factor 2 [Renibacterium salmoninarum ATCC
           33209]
          Length = 374

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
           ADI +   EL+ L +   +    ++    + + + +           L  Q     LW  
Sbjct: 2   ADIDFP-AELRALRALRATYDSIERVIDADSLRKDI---------AVLSEQAGVPDLWDN 51

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
             EA    V      A +  +R   L+ + +++E  +    ++ + +  A     L  + 
Sbjct: 52  PAEA--QKVTSKLSHAQSKLERLETLTARIDDLEVLVELAESEHDEDSLAEASKELVSLQ 109

Query: 626 IQIHQIE 632
             + ++E
Sbjct: 110 KSLQELE 116


>gi|269941585|emb|CBI49990.1| phage protein [Staphylococcus aureus subsp. aureus TW20]
          Length = 370

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 40/347 (11%), Positives = 85/347 (24%), Gaps = 49/347 (14%)

Query: 53  FHCNDSKGFYYCF-SCHVKGDHLSFLSALLGC-----SFIESVQRLAAIAGVPLPVVDPK 106
            +       ++C+  C    D  + +   L       SFI+ +  L  I  + +      
Sbjct: 51  LYYYPETQLFHCYTGCG-SFDVFTLIEKRLKMEGKAHSFIDCITTLGKILEINI----NL 105

Query: 107 IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSR 166
             K + IQ  + ++ +   D+ +   K  + +      +ER +        K        
Sbjct: 106 TSKVKGIQKSVKKIHDW--DWLNKIQKKEKVQPQLKIHNERILTYFDEIYPKA------- 156

Query: 167 YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
                                L          Y      +  P     G +I    R   
Sbjct: 157 --------------WYQAGISLETMEKYQIKFYPEMFQTV-IPHHDHEGNLIGIRSRNWD 201

Query: 227 KGESVKYLNSPETI-----LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM 281
           K    K    P  I         G  LY  +     + +  +  +     S +       
Sbjct: 202 KEFVKKAKYIPTYINDTGYNHPLGYALYGLYQNKEAIIQRKKAMIVEGEKSCLF------ 255

Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
              +        V              LL      +++  D +   +        +    
Sbjct: 256 -SDTFYGEDNFVVAICGSNMSKYQAELLLNLGIEEVIIAIDKEYMQVDTPEFDEYMKKVK 314

Query: 342 LIPGNRVNFVLLSRGEDPDSF--IRCYGKTAFEKLIVESLPLVDMLW 386
            I      ++      D +S    +     A +  + E + +   + 
Sbjct: 315 KIGKLFAPYIQTYHLTDTNSVLNYKDSPLDATKSELEEMMKVDKHIL 361


>gi|194766886|ref|XP_001965555.1| GF22554 [Drosophila ananassae]
 gi|190619546|gb|EDV35070.1| GF22554 [Drosophila ananassae]
          Length = 2609

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 48/367 (13%), Positives = 122/367 (33%), Gaps = 25/367 (6%)

Query: 281  MDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340
             D   L         S     L    +      +   +   +  +         ++  L 
Sbjct: 1037 TDYAKLQLLHSDMEHSLTQAELKVESMTTHLTNTRDKIAKLEEGNGLKALRITELEKQLK 1096

Query: 341  HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE 400
             L+   ++      + ED         K   ++ + E +  ++   K + ++       +
Sbjct: 1097 DLVIEVKIREAKAVKMEDLYVMKMKSVKDDLQEQVREKVTALEEHHKMKMKSAELEKEVQ 1156

Query: 401  RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
              ELE+ L      + +++      Q + ++ ++L +    E     +  K + +     
Sbjct: 1157 IKELEVQLSEQQEKLSEKQ------QKLSEQQEKLSE---QEEKLSEKVQKLSEQETKLS 1207

Query: 461  GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA-DIRYDNNELQKLW 519
               Q+L +      +  KK S +E  L+     H   ++    + +  I     E  K  
Sbjct: 1208 EQEQKLSEQEQKLSQQEKKISEQEEQLIRKEEKHLEEIKNMKADCSGSIHQLEKEHWKQV 1267

Query: 520  SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--ANIVDVRQG 577
              L  +  E    + +++      +   +L ++     R   L +A  E  A   D+   
Sbjct: 1268 QGLQEELAETNREMCKQLSDH--AQEMRQLQQKAVDIHRLEELKTANAEMVAERKDMEVQ 1325

Query: 578  YQQALALYKRFRLL-SRQKEEIEKQIAQVTAKGEA-----EKTAILISI-----LHEVHI 626
             +Q     KR + L  ++ ++++ ++ +   + +A     E++  L          E+  
Sbjct: 1326 LKQLEEEMKREKQLAQQEIDQLKARLRESEEQMDALVLDLEQSKRLAKEESERLAQEIQK 1385

Query: 627  QIHQIES 633
            Q  +++ 
Sbjct: 1386 QAAELKE 1392


>gi|170676323|ref|YP_001742084.1| putative DNA primase [Salmonella phage E1]
 gi|170321633|emb|CAM33152.1| putative DNA primase [Salmonella phage Vi II-E1]
          Length = 317

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 18/164 (10%)

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123
           C  C   G  +++L  L G SF E+++ L     +          K E I+ +L ++   
Sbjct: 63  CNQCG-SGSGINWLMKLSGMSFPEALEALGGFLNMHPRE------KLEAIRKELPKIN-- 113

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD----SRYSLREHLRQKGFS 179
               ++      ++         R   +    +  +G   +        L      +  +
Sbjct: 114 ----YNDDFITEQEVAAIMAKTTRVAMNEWTLINGIGCDINVAIGKYGELIAVEMMRADT 169

Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPI-RSSRGQVIAFGG 222
            +    A + IDGD+  T +    N+      + +RG +   GG
Sbjct: 170 MKLCNVAFIGIDGDSFRTYFRAGYNKDSTINGKLTRGAISPIGG 213


>gi|145591215|ref|YP_001153217.1| SMC domain-containing protein [Pyrobaculum arsenaticum DSM 13514]
 gi|145282983|gb|ABP50565.1| SMC domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 702

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 53/151 (35%), Gaps = 13/151 (8%)

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           L  ++     L      L +    +   + +++ L +          EE+ +R+      
Sbjct: 141 LRRILQEAEYLDRIL-RLDEFDKVDELYRDVYNELRARRERIGGR-AEELEKRIQ--PLR 196

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-------FRLLSRQKEEIEK 600
             L+ L R++ +        E     + +  ++ L L  R          L R+ EE+  
Sbjct: 197 SRLEDLRRRLGEVEAKLRELEPYQNRLPEAERRYLELRDRHNVLLAEREQLERRLEEL-- 254

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             A + A+ + E+    +  + +   ++  +
Sbjct: 255 AHAALEAEKDVEQLEEELEKIRKAAQELKTL 285



 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 7/151 (4%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
           ++++E   E+  +   +   Q    +L  D +  K  L E       +         L  
Sbjct: 390 SLIEELRDEIKRLESLDRAYQTYREYLNVDLLSAKKRLTELEKMYKAKVETERRRAYLAA 449

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK-----GE 610
            V          E     + +       + +R + +  + E+ +  + +  A+       
Sbjct: 450 LVEREAEVLGKLEKAKRRLAEAEVAIGEVGERLKKVEEELEKTQALLKEAEAEYLLIRDR 509

Query: 611 AEKTAILISILHEVHIQIH--QIESQEAMIE 639
             +   L ++  E+  Q+   ++E QEA+ E
Sbjct: 510 HREYTALQTLAKELREQLQSTELELQEAVAE 540


>gi|30248218|ref|NP_840288.1| dnaB; replicative DNA helicase protein [Nitrosomonas europaea ATCC
           19718]
 gi|30180103|emb|CAD84105.1| dnaB; replicative DNA helicase protein [Nitrosomonas europaea ATCC
           19718]
          Length = 465

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 10/130 (7%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           KL       E ++L  L+       +    + +  +   + Q ++  +     + K    
Sbjct: 19  KLPPHSIEAEQSVLGGLMLDNQAWDKVADIIIESDFYRQDHQLIYQHISRLIEQNKPADV 78

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L          QL      A + +           + Y + +    R R + R+
Sbjct: 79  ITVAESLENA------AQLQHAGGLAYIGAIAQNTPSAANIRRYAEIV----RERSIMRK 128

Query: 595 KEEIEKQIAQ 604
             ++  QI  
Sbjct: 129 LAQVSTQITD 138


>gi|317484560|ref|ZP_07943467.1| ATP-dependent chaperone ClpB [Bilophila wadsworthia 3_1_6]
 gi|316924186|gb|EFV45365.1| ATP-dependent chaperone ClpB [Bilophila wadsworthia 3_1_6]
          Length = 872

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 81/211 (38%), Gaps = 17/211 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI +     R ++           +  +++    + ++     + +++++  ++   
Sbjct: 324 YRKYIEKDPALERRFQTVLVEEPSVEDTISILRGLKERFEVHHGVRISDSSIVEAVVLSN 383

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-------- 547
             + ++      I   +     + + + S   E      + +   +              
Sbjct: 384 RYITDRQLPDKAIDLIDEAAAMIRTEIDSLPTELDEANRKVMQLEIEREALRKETDDASR 443

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E L++L+ ++R+  +  A       +++  ++    +    R L  + E+    I   T 
Sbjct: 444 ERLEKLENELRNLQMTQA-------ELKGQWENEKGVINVVRDLKGEIEQTRLAIDDATR 496

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIES-QEA 636
           +G+ +  + L  + L E+  ++H+ E+ QEA
Sbjct: 497 RGDLQAASELKYAKLPELEKRLHEAENGQEA 527


>gi|293375557|ref|ZP_06621831.1| replicative DNA helicase [Turicibacter sanguinis PC909]
 gi|292645774|gb|EFF63810.1| replicative DNA helicase [Turicibacter sanguinis PC909]
          Length = 453

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/161 (8%), Positives = 59/161 (36%), Gaps = 15/161 (9%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           + +     +  E A+L  ++    + ++   +L    + ++  + ++  + +   + K  
Sbjct: 5   QNRHMPHSTDAEQAILGAMLLDEKVCEDVKLKLQPDDFYHHRHRIIYEAMLTLLEQNKGV 64

Query: 533 LPEEIHQRLCERGFGELLKQLD--RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               +   L +      +  ++    + ++   +A T+  I  V +     L + +   L
Sbjct: 65  DVTTVTAFLQDHKRISEIGGVEYILTIYESVATTAHTDHYIDMVLEKSISRLIINRAQEL 124

Query: 591 LSR----------QKEEIEKQ---IAQVTAKGEAEKTAILI 618
           + +            +  E++   ++++    + ++   ++
Sbjct: 125 IEQGYSPETSTQDLIDAAEQKFSGLSRLNQGSDFKEINNVL 165


>gi|261365557|ref|ZP_05978440.1| fels-1 prophage putative phage DNA primase [Neisseria mucosa ATCC
           25996]
 gi|288565985|gb|EFC87545.1| fels-1 prophage putative phage DNA primase [Neisseria mucosa ATCC
           25996]
          Length = 366

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 82/311 (26%), Gaps = 30/311 (9%)

Query: 71  GDHLSFLSALLGCSFIESVQRLAAIAGV------PLPVVDPKIEKKEKIQTDLIRLIEVA 124
           GD    +   L C F E+++ +A +  +      P+P   P+ + + +       + ++A
Sbjct: 67  GDGFGLVMHYLNCDFDEALRAVAGVLNMGGANPLPIPSTRPQTQPRPEKDH----IGKLA 122

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
             +       A          +                   R +      +         
Sbjct: 123 ALW-----NGAEPITADSPAVQYLKSRGLDMAQLPENIRFLREADYWTTGEDKPLFIGRF 177

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQ--VIAFGGRTLSKGESVKYLNSPETILF 242
              +    D                     G+  + A   R L+          P   + 
Sbjct: 178 ACMVCAIRDTGGELQGLHMTYFQTTYDKPYGEDGLHAPHYRKLAIKHPETSEALPAKKMR 237

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC--QAGVQNVVSSLGT 300
           ++ +           +            +  +++ EG    L+           + +  +
Sbjct: 238 NRKQ---------GSISGQAVHLFPIPENGRLVIAEGIETALAARELYKAYDWGLYAALS 288

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL-LSRGEDP 359
           A +    + L      IV+  D D P       A DL +  +  G + +     + G D 
Sbjct: 289 ANSMENFQFL-NGIKEIVIIADNDTPRPVGYRAAYDLAMRAIKQGIKASIWQSKTPGYDA 347

Query: 360 DSFIRCYGKTA 370
              +    ++ 
Sbjct: 348 LDELNEKKQSD 358


>gi|169607082|ref|XP_001796961.1| hypothetical protein SNOG_06594 [Phaeosphaeria nodorum SN15]
 gi|160707150|gb|EAT86425.2| hypothetical protein SNOG_06594 [Phaeosphaeria nodorum SN15]
          Length = 2238

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 84/269 (31%), Gaps = 23/269 (8%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
             +++     D  A LE  +K   +     + RYY  Q    +      +   E       
Sbjct: 743  LDSQIRREQDHYARLESTVKMLESEKNTLQERYYSIQTTLAKQDDKVVRAEQEAVDAVAR 802

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
             +           SQ + Q+   +     +  + E   L  +      + +      +  
Sbjct: 803  MESLEHELVNLKASQSMWQTIEARLTERNQELMDERDRLSKM------VTDVQSLRNEQE 856

Query: 510  YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
              N E ++           +      ++   + E     L +  +R      +       
Sbjct: 857  LANAENRRRLQDRVDALEGELQIAQRKLEDEVAEHKKASLQRDYERSEAQKRIEDLMKAR 916

Query: 570  NIVDVRQGYQQALA--LYKRFRLLSRQKEEIEKQIA--------QVTAKGEAEKT---AI 616
            N  DVR     A    L +R   L  Q +  E ++         +  A  + E++     
Sbjct: 917  NEADVRCAAADAARQQLEQRTNELRTQLQAAEDRVQALQPIPTPRAAAAQDTEESTREEE 976

Query: 617  LISILHEVHIQIHQ----IESQEAMIEGF 641
            L++ + ++  ++ +    +++  A IEGF
Sbjct: 977  LVAQVADLQRKLDRKQEDLDAATAQIEGF 1005


>gi|325103652|ref|YP_004273306.1| chromosome segregation protein SMC [Pedobacter saltans DSM 12145]
 gi|324972500|gb|ADY51484.1| chromosome segregation protein SMC [Pedobacter saltans DSM 12145]
          Length = 1179

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 95/279 (34%), Gaps = 22/279 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           E+L   +     +  N    T    A+++ H  + +   K+  ++   +     +++   
Sbjct: 242 ENLENQEKELGEQRTNIHTQTDKLDADIQKHKFSNLTKEKNLSVQQKATNEFIAKIRAYE 301

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                ++        K  R   +    +  +   L   K   +  ++E   L T+ ++  
Sbjct: 302 SDKKIKNEQLRFLQDKEQRLGAELEKDKNQLNHVLYNIKRLNEDRMQEEQTLQTVSSNLN 361

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            L+E+ +EL           ++        ++Q      ++  +L +      + ++ R 
Sbjct: 362 SLKEEVEEL-----------RIQQQSSKVSLDQSQKEAAQLQNKLYQTDKDIEILKIQRD 410

Query: 557 VRDAGLWSATTEANIVD---------VRQGYQQALALYKRFRLLSRQKEEIEKQI--AQV 605
             +        +    +         V +   +  +   +   L +Q+EE+++Q+   + 
Sbjct: 411 ALEQESIRNVEDTASKETQLSEFNKVVIELENKVESKQHQLSHLQKQEEELKEQLVLQEE 470

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
           +   + E    L   L     + +  +S    +EGF + 
Sbjct: 471 SLNEDKEHLNNLSRRLDARQNEYNLTKSMVDNLEGFPES 509


>gi|269958626|ref|YP_003328413.1| replicative DNA helicase [Anaplasma centrale str. Israel]
 gi|269848455|gb|ACZ49099.1| replicative DNA helicase [Anaplasma centrale str. Israel]
          Length = 492

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 60/196 (30%), Gaps = 27/196 (13%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S+L            E  L+  ++    I       ++   + +    +++  +      
Sbjct: 13  SALSAIGGLPSNIEAEQMLIGAMLRDNRICDALEDVISTDVFFDPLHGRIFDQVIKINRR 72

Query: 529 QKYFLPEEIH------QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                   +       + L E G  E L ++  +        +  +A         ++ L
Sbjct: 73  GLAANEVSLKMFFDNDEALIECGGAEYLAKIAAKASVVFDIRSVAQAVFD---AHLRRCL 129

Query: 583 AL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQ 630
                        Y       +Q E+  +++  + ++G+A++     S+L E V  +I  
Sbjct: 130 IAFGNDVVSNAYDYDSDNPAEQQIEDAAQRLFVLGSRGKADRNYHKFSVLVEDVRKKIET 189

Query: 631 IESQEAMIEGFGKMSG 646
                   EG   + G
Sbjct: 190 AR------EGANALQG 199


>gi|257061898|ref|YP_003139786.1| replicative DNA helicase [Cyanothece sp. PCC 8802]
 gi|256592064|gb|ACV02951.1| replicative DNA helicase [Cyanothece sp. PCC 8802]
          Length = 444

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/174 (10%), Positives = 52/174 (29%), Gaps = 12/174 (6%)

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           L  +    E ++L  ++     +      +    +     + ++      + + K     
Sbjct: 7   LPPQNIEAEESILGGILLDREAMGRVADLITPDAFYVQAHKDIYEAALKLYAQGKPTDFL 66

Query: 536 EIHQRLCE----------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +   L +              +LL      V      +   +  +          +   
Sbjct: 67  TVKSILEDHQLLEKVGGTDKLNQLLDSTVAAVNIDRYAALVMDKYLRRQLISAGHEITEL 126

Query: 586 --KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
             +  + L +  +E EK+I  +T K   E    +   L + + ++ +   + A+
Sbjct: 127 GFETTKELEQVLDESEKKIFSLTQKRPQEGLIPIADTLVQTYSELEKRHQKTAL 180


>gi|195483992|ref|XP_002090517.1| Mhc [Drosophila yakuba]
 gi|194176618|gb|EDW90229.1| Mhc [Drosophila yakuba]
          Length = 2153

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1763 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1822

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1823 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1875

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1876 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1935

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1936 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1995

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1996 KGGKKAIQKLEQRVRELENE 2015


>gi|295087482|emb|CBK69005.1| hypothetical protein [Bacteroides xylanisolvens XB1A]
          Length = 318

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 8/63 (12%)

Query: 26 DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL---LG 82
             ++  N      W   P  +E   SF  N  +  +Y F+    G+ ++    L     
Sbjct: 22 PVKQQGINL-----WYKSPLREETEASFKVNTERNQWYDFALGKGGNIIALAQELYCSDH 76

Query: 83 CSF 85
            F
Sbjct: 77 VPF 79


>gi|219990777|gb|ACL68762.1| RH59876p [Drosophila melanogaster]
          Length = 1962

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|254414766|ref|ZP_05028531.1| replicative DNA helicase [Microcoleus chthonoplastes PCC 7420]
 gi|196178614|gb|EDX73613.1| replicative DNA helicase [Microcoleus chthonoplastes PCC 7420]
          Length = 448

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 60/180 (33%), Gaps = 12/180 (6%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           S++   +  +    E ++L  ++  P  +      L+   +  +  Q+++   F    E 
Sbjct: 8   SIIPSSVPPQNIEAEESILGGIMLDPEAMSRVVDLLSPEAFYVSAHQEIYRSAFILHHEG 67

Query: 530 KYFLPEEIHQRLCER-------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
           K      +   L +        G  ++ + ++R V    +           +R+   Q+ 
Sbjct: 68  KPTDFMSVTSWLYDHKLLDKVGGQSKIAQLIERTVSAVNIDRYAALVMDKYLRRQLIQSG 127

Query: 583 ALYKRFR-----LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
               +        L    E+ E++I  +T     +    +   L +   +I  +    A+
Sbjct: 128 NEIVQLGYETPMALDFVLEQAEQKIFNLTQVRPQQGLVPISETLIQAFQEIETLHEGLAL 187


>gi|189031481|sp|A4IFI1|CC157_BOVIN RecName: Full=Coiled-coil domain-containing protein 157
          Length = 688

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 70/235 (29%), Gaps = 23/235 (9%)

Query: 428 IRDRLQQLFQKYITEHSGYG-RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
              +L  L +  + E  G   R   +           Q   Q    + +  +    RE  
Sbjct: 285 CLGKLVGLLRAQLEEAEGQKDRLRMQVGELEQALQEEQAARQRQAQEAEQHRAQWERERQ 344

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
               L     +  +      +++      Q + S       E ++ L  E   +  E+  
Sbjct: 345 --QLLAETSDLKTKVATLEGELKQQRESTQAVESKAQQLQAEAEHRLEAERQVQHLEQQV 402

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
             L  +LD   +     S   +     V    +   +L  + R L +Q + ++++  ++ 
Sbjct: 403 ELLAGRLDGASQQIRWASTELDKEKARVDSMVRHQESLQAKQRALLQQLDSLDQEREELR 462

Query: 607 AKGEAEKTAILISI--------------------LHEVHIQIHQIESQEAMIEGF 641
              +  +                           + E+  ++ ++  +E ++  F
Sbjct: 463 GSLDEAEAQRAHVEEQLQSVQGEREQATTDLRLTISELERELVELRERERLLVAF 517


>gi|158285521|ref|XP_308355.3| AGAP007523-PB [Anopheles gambiae str. PEST]
 gi|157020032|gb|EAA45415.3| AGAP007523-PB [Anopheles gambiae str. PEST]
          Length = 2003

 Score = 46.4 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 94/280 (33%), Gaps = 6/280 (2%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              + + Y +   EK  +      ++    E E         + ELE  +++  + I++++
Sbjct: 914  QEYEKKYQQAMEEKTHLAEQLQAEIELCAEAEEGRARLVARKQELEELMQDLESRIEEEE 973

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R     + + +LQ   Q    +        +K    + Q     + M+  +   +    
Sbjct: 974  ERVNALTSEKKKLQINIQDLEEQLEEEEAARQKLQLEKVQLDAKLKKMEEDVALIEDQNH 1033

Query: 480  PSLREAALLLTLINHPAILQEQYQE----LADIRYDNNE-LQKLWSFLFSDFVEQKYFLP 534
              ++E  LL    N  +    + +E    LA ++  +   + +L   L  D  +++    
Sbjct: 1034 KLVKEKKLLEERANDLSQTLAEEEEKAKHLAKLKVKHESTIAELEERLLKDHQQRQEADR 1093

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +           E + +   Q+ +        E  +        +  A     +   R+
Sbjct: 1094 SKRKIETEVADLKEQINERRMQIEEMQQQLVKREEELAQTLVRIDEESAAKAAAQKTQRE 1153

Query: 595  KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             E    +I +     +  ++        +++ ++  ++++
Sbjct: 1154 LESQLAEIQEDLEAEKLARSKAE-KQKRDLNEELEALKNE 1192


>gi|189192759|ref|XP_001932718.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
 gi|187978282|gb|EDU44908.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
          Length = 2205

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 98/286 (34%), Gaps = 23/286 (8%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              +R   ++A  +L  E+        +R+ E        +      +         D   
Sbjct: 845  DKLRMDLQSAERRLEDEAAEHKRATQQRDYERMEAQRRIDDLITARNSAEVKAATADST- 903

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR---LMQSSLVKGKLS 477
                 Q +  R++ L  +  T          +     +    S+    + Q S +K KL 
Sbjct: 904  ----RQQLEQRIKDLQNQLQTAEERVAALQPRPESTEEADSASREEELIAQVSELKRKLE 959

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            +K    EA +   +     I QE    L          ++L   L S   ++K     ++
Sbjct: 960  RKEEDLEA-VTAQIAGFQDIAQEAENRLQTF---VEAHERLQEQL-SLAEQEKDATINDL 1014

Query: 538  HQRLCE---------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             QR+ +             EL  Q +++         T EA IV ++       A  +  
Sbjct: 1015 QQRVNDISSELATSSTELTELRGQHEQETLVLKQEKETLEAEIVRLQNDVADYKAEAENQ 1074

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                + + +I ++ AQ   + E +K A  +  L EV  Q +++++Q
Sbjct: 1075 TQYVKTQADIAER-AQKDYEHEFQKHAESMQKLREVRDQYNELQTQ 1119



 Score = 37.9 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/246 (8%), Positives = 75/246 (30%), Gaps = 34/246 (13%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + ++     L ++Y    +   +      +       ++  +QS   +    +      
Sbjct: 735 IKLLQSEKDSLQERYNKVQATMAQQDDNLVKATQNAAEAEARLQSLQGEMVQLRASQQMS 794

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           A + + L      L  +   L+ +      L+       ++   +     +++   L   
Sbjct: 795 ATIEVRLKERNQELMTERDRLSSMVSSIQSLRNEAELATAESRRELQNSVDKLRMDLQSA 854

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-----------LLSR 593
                 ++L+ +  +    +   +   ++ ++     +                   L +
Sbjct: 855 E-----RRLEDEAAEHKRATQQRDYERMEAQRRIDDLITARNSAEVKAATADSTRQQLEQ 909

Query: 594 QKEEIEKQIAQVTA--------------KGEAEKTAILISILHEVHIQIHQ----IESQE 635
           + ++++ Q+                      A +   LI+ + E+  ++ +    +E+  
Sbjct: 910 RIKDLQNQLQTAEERVAALQPRPESTEEADSASREEELIAQVSELKRKLERKEEDLEAVT 969

Query: 636 AMIEGF 641
           A I GF
Sbjct: 970 AQIAGF 975


>gi|148683885|gb|EDL15832.1| benzodiazapine receptor associated protein 1 [Mus musculus]
          Length = 1672

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 90/244 (36%), Gaps = 19/244 (7%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP---SQRLMQSSLV 472
           ++Q LR        +++++L +K         R  ++  + ++       +      S +
Sbjct: 141 ENQMLRKSSFPETEEKVRRLKRKNAELAVIAKRLEERAQKLQETNMRVVSAPVPRPGSSL 200

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           +         R   L  T     + L  + +++A ++    E ++L + L     E   +
Sbjct: 201 ELCRKALARQRARDLSETA----SALLAKDKQIAALQ---RECRELQARLSLVGKEGPQW 253

Query: 533 LPEEIHQRLCERGFGELLK---QLDRQVRDAGLWSATTEANIVDVRQGYQQALAL---YK 586
           L      RL      E+L+   Q+  + +   L  A +       R   Q  +       
Sbjct: 254 LHMRDFDRLLRESQREVLRLQRQIALRNQREPLRPARSPGPTAPSRAVLQDDVESPQVVL 313

Query: 587 RFRLLSRQKEEIEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA-MIEGFGK 643
           R     ++ +++E ++   +   +   ++         E+ +Q+   +++ A ++E   +
Sbjct: 314 REPEKQQRVQQLESELCKKRKKCESLEQEARKKQRRCEELELQLRAAQNENARLVEENSR 373

Query: 644 MSGR 647
           +SGR
Sbjct: 374 LSGR 377


>gi|29124550|gb|AAH48916.1| Efcab4a protein [Mus musculus]
          Length = 435

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           S  +E      E + Q L  R          L ++L++Q+ +      +      + R  
Sbjct: 217 SACLEAAAREREGLEQALRRRESEHEREVRGLYEELEQQLGEQRHRRQSQNLPREEQRGH 276

Query: 578 YQQALALYKRFRLLSR---QKEEIEKQIAQ--VTAKGEAEKTAILISILHEVHIQIHQIE 632
               L L  R + L R   ++ E+E+Q+            +   L      +  Q+ Q +
Sbjct: 277 L--ELELQTREQELERAGLRQRELEQQLQARAAEQLEAQAQHIQLQRAYEAIRAQLDQAQ 334

Query: 633 SQEAMIEGFGKMSGR 647
            Q + +E  G+  GR
Sbjct: 335 EQLSRLE--GEAQGR 347


>gi|195383822|ref|XP_002050624.1| GJ22258 [Drosophila virilis]
 gi|194145421|gb|EDW61817.1| GJ22258 [Drosophila virilis]
          Length = 2035

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 18/242 (7%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +  R   ++ I +                    +  AR    +   +    +S V    S
Sbjct: 1768 ETERDELAEEIAN-------NANKGSLMIDEKRRLEARIATLEEELEEEQSNSEVLLDRS 1820

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-------FSDFVEQK 530
            +K  L+   L   L N  +  Q+   + A +   N EL+   + +           +   
Sbjct: 1821 RKAQLQIEQLTTELANEKSTSQKNENQRALLERQNKELKAKLAEIETAQRTKVKATIATL 1880

Query: 531  YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRF 588
                  + ++L   G   LL+Q   +  D  +   T         V Q  +Q   L  R 
Sbjct: 1881 EAKIANLEEQLENEGKERLLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRI 1940

Query: 589  RLLSRQKEEIEKQIA-QVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSG 646
            +LL R  +E E+++  + T K + ++    +    E ++ +I+ ++++     G G  S 
Sbjct: 1941 KLLKRNLDETEEELQKEKTQKRKYQRECEDMIESQEAMNREINSLKTKLRRTGGMGLSST 2000

Query: 647  RL 648
            RL
Sbjct: 2001 RL 2002


>gi|39939032|ref|NP_950798.1| hypothetical protein PAM_546 [Onion yellows phytoplasma OY-M]
 gi|39722141|dbj|BAD04631.1| hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 158

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 21/133 (15%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDY----WACCPFHDEKTPSF-HC 55
           MNY ++ IK +  H P+S      V   +   N +  ++       CP H  K P+  H 
Sbjct: 1   MNY-QEKIKHIQTHFPMS------VLLKK--LNIIPPNFNINHRFPCPIHQGKNPTCCHF 51

Query: 56  NDSKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAAIAG-VPLPVVDPKIEKKEKI 113
                  +C+ C    D +    A+    SF E++Q++A          ++ + ++  KI
Sbjct: 52  TSDNKI-HCWKCCKDYDIIDVYMAIRQIKSFHEAIQKIAGFMNSFEFKALNKQEKEITKI 110

Query: 114 Q----TDLIRLIE 122
                  L + ++
Sbjct: 111 TINPLKQLYQPMK 123


>gi|260807192|ref|XP_002598393.1| hypothetical protein BRAFLDRAFT_128123 [Branchiostoma floridae]
 gi|229283665|gb|EEN54405.1| hypothetical protein BRAFLDRAFT_128123 [Branchiostoma floridae]
          Length = 1869

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 26/295 (8%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRE-TENRSFNTPDERAELEIHLKNCINHI-KDQ 418
               R   +     L      ++  L  +   +        +R   +      +++I K++
Sbjct: 738  DISRSLDEEHTNSLKETQKDVLKNLSSKHGVDAVRQQEIMDRFRKDQENLEYMSNIRKER 797

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW--KKNARHRDQKGPSQRLMQSSLVKGKL 476
            + +   ++    + +++            + +  ++  + +      Q+   + LV  +L
Sbjct: 798  QTQDLQAKLAARKARKIADAMRQAEEDAAKRFIDEQEKQLQQVAQLQQQEASAGLVIPQL 857

Query: 477  SKKPSLREAALLLTLINH----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-- 530
            +   SL E A+      H      ++     E  ++        K+   +     E++  
Sbjct: 858  APGDSLEEQAIKK---EHQRAQDELVARHKDEREELE------AKMDQEMRKKEAEERKK 908

Query: 531  -YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 E+  +    +   EL  + D    +     A  E  + D+      A    ++  
Sbjct: 909  FEAEREKALREKKNKQAAELAARKDLTEEEMAALLAAHEQELEDLNDRL-DAERSRQQLS 967

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH----IQIHQIESQEAMIEG 640
            L  +       ++     K EAE T  L+    E+      Q+ + E Q AMIEG
Sbjct: 968  LRDKLLARKRNRLQNKQRKQEAEMTKELLEQKKELKEARTKQVKEAEKQ-AMIEG 1021


>gi|198283100|ref|YP_002219421.1| hypothetical protein Lferr_0968 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|198247621|gb|ACH83214.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 916

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 7/153 (4%)

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           + Q+  + L    ++  ELQK    +   F +      E        R   E    + ++
Sbjct: 353 LSQDFVERLCSSDHEGTELQKAIEDVV--FAKLDEIQKEGYSSFGELRKAREAASNIQKE 410

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                L +   E  +  +++   Q  +  +    + +Q EE++KQ+   T   + +    
Sbjct: 411 ALRGELATLHKE--VDRLQEAIDQRGSKIRAKAEVEKQVEELKKQLPDATQSVDQKILEE 468

Query: 617 LISI---LHEVHIQIHQIESQEAMIEGFGKMSG 646
           L      L E+  QI     +   IEG  +  G
Sbjct: 469 LEKQQILLRELEEQIANRSRRRRTIEGAIESYG 501


>gi|332880579|ref|ZP_08448253.1| ATP-dependent chaperone protein ClpB [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681567|gb|EGJ54490.1| ATP-dependent chaperone protein ClpB [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 866

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 74/273 (27%), Gaps = 41/273 (15%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + L  +DM              +    +   +      I        
Sbjct: 220 RILRGDVPENLKDKQLYSLDMGALIAGAKYKGEFEERLKSVINEVTKSEGRI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      ++N P  L                   +   L   +             R+ +
Sbjct: 328 ERRFQTVMVNEPDTLSTI---------------SILRGLKERYENHHKV-------RIQD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + D        +  I  + +    A  L      +  + +EIE+++ 
Sbjct: 366 DAIIAAVELSNRYITDR----FLPDKAIDLMDEA---AAKLRMERDSVPEELDEIERRLK 418

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           Q+  + EA K       L ++  +I +++ QE+
Sbjct: 419 QLEIEREAIKRENDQPKLEQLSKEIAELKEQES 451



 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 79/217 (36%), Gaps = 20/217 (9%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++    +      +  +++    + +   K  +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQTVMVNEPDTLSTISILRGLKERYENHHKVRIQDDAIIAAVELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL         +      +EI +RL +       + + R
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRME-----RDSVPEELDEIERRLKQLEIER--EAIKR 429

Query: 556 QVRDAGLWSATTEANIVDVRQG-----YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           +     L   + E   +  ++      ++    L  + +   +Q E+++ +  +   +G+
Sbjct: 430 ENDQPKLEQLSKEIAELKEQESSYKAKWEAERGLVNKIQQNKQQIEQLKFEAERAEREGD 489

Query: 611 AEKTAI--------LISILHEVHIQIHQIESQEAMIE 639
             K A         L   ++ +  Q+   +  +AMI+
Sbjct: 490 YGKVAEIRYGKLKALEDEINRIQDQLKDTQGGDAMIK 526


>gi|255017997|ref|ZP_05290123.1| DNA primase [Listeria monocytogenes FSL F2-515]
          Length = 93

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 41/100 (41%), Gaps = 12/100 (12%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
               P +    + +     L+  L+  +                 +  ++  +   KR++
Sbjct: 1   NDADPTKFMDSVPDAAMKGLISSLEMVIS-----------PDEQGKPQFEDYIRSLKRYK 49

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            L ++K+E+E+++A    + + E    ++  + +++ Q++
Sbjct: 50  -LEQKKKELEQELATYNRENDNENEIRVMLEIVQLNRQLN 88


>gi|24660442|gb|AAH39612.1| MYO18A protein [Homo sapiens]
          Length = 2002

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 82/263 (31%), Gaps = 15/263 (5%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             +      ++  VD   KR  +        E+       +   +   D +      Q ++
Sbjct: 1370 EWRLKYERAVREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADSEESQRALQQLK 1429

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNA---RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             + Q+L  +             +N    + + +             + KL ++   RE  
Sbjct: 1430 KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEEAQREKLQREKLQREKD 1489

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +L         L E +     +   + ++      + S   E +    +E          
Sbjct: 1490 ML---------LAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKV 1540

Query: 547  GELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
             + L+ L+ +V+D           I     ++Q   Q    Y+  + + R+K E+E ++A
Sbjct: 1541 KKQLRDLEAKVKDQEEELDEQAGTIQMLEQLKQMEVQLEEEYEDKQKVLREKRELEGKLA 1600

Query: 604  QVTAKGEAEKTAILISILHEVHI 626
             ++ +           +  ++  
Sbjct: 1601 TLSDQVNRRDFESEKRLRKDLKR 1623



 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/286 (10%), Positives = 78/286 (27%), Gaps = 16/286 (5%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R   +    +   + L       K++ E +  +      ++        +    + 
Sbjct: 1472 EEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQES 1531

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                    ++ +L+ L  K   +                 K    +L +    K K+ ++
Sbjct: 1532 KDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQLKQMEVQLEEEYEDKQKVLRE 1591

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEI 537
                E  L            E  + L         L      +               ++
Sbjct: 1592 KRELEGKLATLSDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQL 1651

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +L E  F          V+         E   + +    +   AL ++   L R+K E
Sbjct: 1652 KNQLEESEFT-----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNE 1706

Query: 598  IEKQIAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQ 634
            I+ ++ +                 + +  ++ ++++  Q+ +   +
Sbjct: 1707 IQNRLEEDQEDMNELMKKHKAAVAQASRDLAQINDLQAQLEEANKE 1752



 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 36/312 (11%), Positives = 98/312 (31%), Gaps = 44/312 (14%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC---INHIKDQKLRY 422
              K   E+L  ++  +  +   ++ E +     +++ ++    +     +  + DQ  R 
Sbjct: 1550 KVKDQEEELDEQAGTIQMLEQLKQMEVQLEEEYEDKQKVLREKRELEGKLATLSDQVNRR 1609

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
             +      RL++  ++     +               K    +L    L + + +   ++
Sbjct: 1610 DFESE--KRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKN-QLEESEFTCAAAV 1666

Query: 483  REAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY---------- 531
            +    +   I    + + +  +    +    + LQ+  + + +   E +           
Sbjct: 1667 KARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHK 1726

Query: 532  ----------FLPEEIHQRLCER-----GFGELLKQLDRQVRDAGLWSATT------EAN 570
                          ++  +L E         E L+ L  QV                EA 
Sbjct: 1727 AAVAQASRDLAQINDLQAQLEEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAK 1786

Query: 571  IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEV 624
            I ++    +      KR   L+ + +E  +++ +           E E+   L   L + 
Sbjct: 1787 IRELETRLEFERTQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDT 1846

Query: 625  HIQIHQIESQEA 636
              ++ ++  +EA
Sbjct: 1847 KEEMGELARKEA 1858


>gi|157891|gb|AAA28686.1| myosin heavy chain [Drosophila melanogaster]
          Length = 1962

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|24584710|ref|NP_724007.1| myosin heavy chain, isoform B [Drosophila melanogaster]
 gi|22946668|gb|AAN10967.1| myosin heavy chain, isoform B [Drosophila melanogaster]
          Length = 1962

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|320451090|ref|YP_004203186.1| ATP-dependent chaperone protein ClpB [Thermus scotoductus SA-01]
 gi|320151259|gb|ADW22637.1| ATP-dependent chaperone protein ClpB [Thermus scotoductus SA-01]
          Length = 861

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 52/156 (33%), Gaps = 17/156 (10%)

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           A +   +++H  I + +  +   I   +    +L   L S   E      +++   +   
Sbjct: 367 ALVAAAVLSHRYITERRLPD-KAIDLIDEAAARLRMALESAPEEIDTLERKKLQLEIERE 425

Query: 545 GFG--------ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                      E LK ++ ++          +A     R+  ++     +R   + RQ E
Sbjct: 426 ALKKEKDPDSQERLKAIEEEIAHLNQEIQKLKAEWEAEREVLKKLREAQQRLDEVRRQIE 485

Query: 597 EIEKQIAQVTAKGEAEKTAIL-ISILHEVHIQIHQI 631
             E+Q        +  + A L    L  +  ++  +
Sbjct: 486 LAERQ-------YDLNRAAELRYGELPRLEAEVEAL 514



 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 55/144 (38%), Gaps = 11/144 (7%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG--FGELLKQLDR 555
           ++E+Y+    +R  +  L  + + + S     +  LP++    + E        L+    
Sbjct: 351 IKEKYEVHHGVRISDPAL--VAAAVLSHRYITERRLPDKAIDLIDEAAARLRMALESAPE 408

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           ++          E     +++  ++     +R + +  +   + ++I ++ A+ EAE+  
Sbjct: 409 EIDTLERKKLQLEIEREALKK--EKDPDSQERLKAIEEEIAHLNQEIQKLKAEWEAEREV 466

Query: 614 ---TAILISILHEVHIQIHQIESQ 634
                     L EV  QI   E Q
Sbjct: 467 LKKLREAQQRLDEVRRQIELAERQ 490


>gi|270296328|ref|ZP_06202528.1| DNA primase [Bacteroides sp. D20]
 gi|270273732|gb|EFA19594.1| DNA primase [Bacteroides sp. D20]
          Length = 318

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 26 DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79
             ++  N      W   P  +E   SF  N  +  +Y F+    G+ ++    
Sbjct: 22 PVKQQGINL-----WYKSPLREETKASFKVNTERNQWYDFALGKGGNIIALAQE 70


>gi|24584692|ref|NP_723999.1| myosin heavy chain, isoform C [Drosophila melanogaster]
 gi|22946659|gb|AAN10959.1| myosin heavy chain, isoform C [Drosophila melanogaster]
          Length = 1962

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|317489936|ref|ZP_07948428.1| hypothetical protein HMPREF1023_02128 [Eggerthella sp. 1_3_56FAA]
 gi|316910934|gb|EFV32551.1| hypothetical protein HMPREF1023_02128 [Eggerthella sp. 1_3_56FAA]
          Length = 1177

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRY-------WKKNARHRDQKGPSQRLMQSSLVKGKL 476
               + DR++ L  +         +         K+    R++     +L  +       
Sbjct: 252 LVDEVADRIKALAPEREQARVDQLKSDAQKELDEKRADYERERADAQSQLDDAKRQLDDA 311

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPE 535
           +   +  E  L      + +   E     A  +   ++  +++         ++      
Sbjct: 312 AATIAASEQGLADGQAAYDSGASELASRRASAQAQLDDAERQIAEGQAQLDAQRPQLDDA 371

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
               +     + +    L     D    S   +A I   + G   A A   R   + +  
Sbjct: 372 AGQLQAARAQWQQGADALAAAWGDWQRQSDELDAGITRAQAGVADAAAGVDR---IQKGI 428

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + +E+QI Q+    +A+K A L +    +  Q   + +Q A+++
Sbjct: 429 DALEEQIKQLDPDKDAQKIAELRAEQDALKAQQQDLRAQMALVQ 472


>gi|281365099|ref|NP_001162992.1| myosin heavy chain, isoform P [Drosophila melanogaster]
 gi|272407070|gb|ACZ94278.1| myosin heavy chain, isoform P [Drosophila melanogaster]
          Length = 1949

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|74000801|ref|XP_544699.2| PREDICTED: similar to cingulin-like 1 [Canis familiaris]
          Length = 1224

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 88/279 (31%), Gaps = 12/279 (4%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y +    +L      L +   + E    +     +   L           +D+ 
Sbjct: 895  QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKLQDEMRLMEEELRDYQRAQDEA 954

Query: 420  L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L  R    Q ++D   +L  K   +        +   +    +   +    +S +  +  
Sbjct: 955  LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERI 1014

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-------QK 530
             +   +   +   L+   A+ Q+   +   +   N +L+     L   +         Q 
Sbjct: 1015 TRSREQMEQMRSELLQERALKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQM 1074

Query: 531  YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 E+  RL          QL  +  +  +     + +   +     Q   L  R + 
Sbjct: 1075 EARIAELEDRLENEERDRASLQLSNRRLERKVKELVMQVDDEHLSLT-DQKDQLSLRLKA 1133

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            + RQ EE E++I ++ +    +K    +    +V+ Q+ 
Sbjct: 1134 MKRQVEEAEEEIDRLESS--KKKLQRELEEQMDVNEQLQ 1170


>gi|24584706|ref|NP_724006.1| myosin heavy chain, isoform I [Drosophila melanogaster]
 gi|22946666|gb|AAN10965.1| myosin heavy chain, isoform I [Drosophila melanogaster]
          Length = 1962

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|24584700|ref|NP_724003.1| myosin heavy chain, isoform F [Drosophila melanogaster]
 gi|22946663|gb|AAN10962.1| myosin heavy chain, isoform F [Drosophila melanogaster]
          Length = 1962

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|24584698|ref|NP_724002.1| myosin heavy chain, isoform J [Drosophila melanogaster]
 gi|22946662|gb|AAF53566.3| myosin heavy chain, isoform J [Drosophila melanogaster]
          Length = 1960

 Score = 46.4 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1570 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1629

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1630 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1682

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1683 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1742

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1743 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1802

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1803 KGGKKAIQKLEQRVRELENE 1822


>gi|322412351|gb|EFY03259.1| hypothetical protein SDD27957_08270 [Streptococcus dysgalactiae
          subsp. dysgalactiae ATCC 27957]
          Length = 362

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          P HD    SF        +  FS  ++GD + F+  + G SF E++  L
Sbjct: 34 PEHD----SFRIFADTNTFKWFSRDIQGDVIDFVQLMTGVSFKEALSYL 78


>gi|257793007|ref|YP_003186406.1| hypothetical protein Aaci_3014 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479699|gb|ACV60017.1| hypothetical protein Aaci_3014 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 169

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 33/151 (21%)

Query: 34  AVKGDYWACCP--------FHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSF 85
           +  G + A CP        FH       + +  K  +YC  C  KG  ++F + L G SF
Sbjct: 19  SRPGQWKAHCPVCGDQGRNFH------LYVSSVKDTFYCHKCGEKGGAVAFHAWLRGISF 72

Query: 86  IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145
            E+ +  A +         P+  +K          +  A       L          +  
Sbjct: 73  -EAAK--AELY--------PQGTRKRN--------LHPAERLTAAQLAELGFTTRKPWRM 113

Query: 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            +G+D  A    +           + H R K
Sbjct: 114 PKGVDPLAWRRQRKAMLDWIWEEYQGHERFK 144


>gi|221316432|ref|ZP_03598237.1| hypothetical protein BsubsN3_22225 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 346

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 100/363 (27%), Gaps = 57/363 (15%)

Query: 28  DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS-CHVKGDHLSFLSALLGCSFI 86
             + +N +       C  H+  +       +   +YCF+ C    D    +  + G +F 
Sbjct: 27  KLKGSNIIC---KTIC--HNGHSHKLTYYSNSHSFYCFTECG-HMDLYGLIGKIKGLTFF 80

Query: 87  ESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDE 146
           ES + +    G+          K    + D+         FF       +D      L +
Sbjct: 81  ESFKFVCQRFGL-----SYGNSKYGSDKVDM--------SFFEK--FEPKDMAAEIKLLD 125

Query: 147 RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRL 206
           + I     + +   +  D+                                 Y    N++
Sbjct: 126 KKILDSYYDYYHKSWIEDNIS---------------------PKTMKKFNIKYSVLDNQI 164

Query: 207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDV 266
           I P    +G ++    R L++             +F+K + L +  GA   L        
Sbjct: 165 IIPHYDLKGNLVGVRARNLNQELVNSGKKY--MPVFYKNRFLKHPTGA--CLYGLNFNLE 220

Query: 267 RRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLS---PRIVLCFDG 323
           +      IIL E    V+ +        ++   +  T    +L         R+++  D 
Sbjct: 221 QITDYGAIILCESEKSVMQIDTMFPDMSIAVALSGSTLTDTQLEIINDLGIERVIIALDK 280

Query: 324 DDP--GLRAAYKAIDLVLCHLIPGNRVN-----FVLLSRGEDPDSFIRCYGKTAFEKLIV 376
           +    G       I+ +    I              +    D        G   F KL  
Sbjct: 281 EFTEVGSIEEKYYIEKINSVFINKLSSRFETSVMWDVEGLLDLKDSPSDKGPETFMKLFH 340

Query: 377 ESL 379
             +
Sbjct: 341 NRI 343


>gi|195344578|ref|XP_002038858.1| GM17204 [Drosophila sechellia]
 gi|194133988|gb|EDW55504.1| GM17204 [Drosophila sechellia]
          Length = 2153

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1763 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1822

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1823 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1875

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1876 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1935

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1936 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1995

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1996 KGGKKAIQKLEQRVRELENE 2015


>gi|110825729|sp|P05661|MYSA_DROME RecName: Full=Myosin heavy chain, muscle
          Length = 1962

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|24584694|ref|NP_724000.1| myosin heavy chain, isoform G [Drosophila melanogaster]
 gi|281365097|ref|NP_001162991.1| myosin heavy chain, isoform O [Drosophila melanogaster]
 gi|22946660|gb|AAN10960.1| myosin heavy chain, isoform G [Drosophila melanogaster]
 gi|272407069|gb|ACZ94277.1| myosin heavy chain, isoform O [Drosophila melanogaster]
          Length = 1962

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|283955982|ref|ZP_06373472.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792642|gb|EFC31421.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 458

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/122 (10%), Positives = 40/122 (32%), Gaps = 2/122 (1%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L + I           +++   +     + ++  + +    ++      + +   
Sbjct: 10  LERAILSSCIMSEEAYASIAGDISPKDFSLKAHEDIFKAIIACSNNKEPISISFLKKH-- 67

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           ++   E+L ++        L +   E     +++       L       +R   EI  +I
Sbjct: 68  KKIDEEILAEILATPSMIDLPAYVNELREKSIKRQLLSFAHLLPARINENRAVSEIADEI 127

Query: 603 AQ 604
            +
Sbjct: 128 GK 129


>gi|195436762|ref|XP_002066324.1| GK18232 [Drosophila willistoni]
 gi|194162409|gb|EDW77310.1| GK18232 [Drosophila willistoni]
          Length = 2147

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1757 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1816

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1817 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1869

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1870 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1929

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1930 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1989

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1990 KGGKKAIQKLEQRVRELENE 2009


>gi|194884434|ref|XP_001976258.1| GG22771 [Drosophila erecta]
 gi|190659445|gb|EDV56658.1| GG22771 [Drosophila erecta]
          Length = 2156

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1766 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1825

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1826 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1878

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1879 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1938

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1939 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1998

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1999 KGGKKAIQKLEQRVRELENE 2018


>gi|206977729|ref|ZP_03238620.1| MutS2 family protein [Bacillus cereus H3081.97]
 gi|206744030|gb|EDZ55446.1| MutS2 family protein [Bacillus cereus H3081.97]
          Length = 786

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIEQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|24584702|ref|NP_724004.1| myosin heavy chain, isoform D [Drosophila melanogaster]
 gi|22946664|gb|AAN10963.1| myosin heavy chain, isoform D [Drosophila melanogaster]
          Length = 1962

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|13786876|pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
            Chicken Gizzard Smooth Muscle Myosin With Regulatory
            Light Chain In The Dephosphorylated State. Only C Alphas
            Provided For Regulatory Light Chain. Only Backbone Atoms
            Provided For S2 Fragment.
 gi|13786879|pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
            Chicken Gizzard Smooth Muscle Myosin With Regulatory
            Light Chain In The Dephosphorylated State. Only C Alphas
            Provided For Regulatory Light Chain. Only Backbone Atoms
            Provided For S2 Fragment
          Length = 1184

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 84/277 (30%), Gaps = 23/277 (8%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     +     E E        ++ ELE  L      I++++ R    QA + ++QQ  
Sbjct: 898  QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQM 957

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                 +        +K    +       + M+  ++  +       +E  LL        
Sbjct: 958  LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE------E 1011

Query: 497  ILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKYFLPEEIHQRLCER--G 545
             + +    LA+       L KL      + S+        E+     E+I ++L      
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----ALYKRFRLLSRQKEEIEKQ 601
              E + +L  Q+ +     A  E  +       +          K+ R L     ++++ 
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131

Query: 602  IAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQEA 636
            +    A     +     L   L  +  ++       A
Sbjct: 1132 LESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTA 1168


>gi|328541750|ref|YP_004301859.1| hypothetical protein SL003B_0126 [polymorphum gilvum SL003B-26A1]
 gi|326411502|gb|ADZ68565.1| hypothetical protein SL003B_0126 [Polymorphum gilvum SL003B-26A1]
          Length = 856

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 74/231 (32%), Gaps = 27/231 (11%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            + L  L  +   E +G  +  +     R    P  R +        L     LR     
Sbjct: 412 SEVLLVLTARDEAEQTGSSQPHRFTLPQRRFSKPLARAVVEQRRDLALDANTHLRVLDAF 471

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             L+  P +     +    + +     + L +    D +     L  ++   + +     
Sbjct: 472 DALLLAPEVFGVDTRSYLGLDF---AYRNLIAARSDDDLRALLPLLWDLALTIEDGDLS- 527

Query: 549 LLKQLDRQVRDAGLWSATTEANIVD----------VRQGYQQALALYKRFR--------- 589
           L ++  R+ ++A   +    A+  +            Q Y QALA   R           
Sbjct: 528 LAERALREAQEALRKALEEGASDEEIARLTENLRQALQEYMQALAEQMRQNPQAMQPFNP 587

Query: 590 ---LLSRQ-KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +LS+Q   E+ ++I ++   G  +    L++ +  +   +     Q A
Sbjct: 588 GQQMLSQQDLNEMLRRIEELARTGSRDAARELLAQMQRMLENLQAGRPQMA 638


>gi|261335322|emb|CBH18316.1| hypothetical protein, conserved, (fragment) [Trypanosoma brucei
            gambiense DAL972]
          Length = 1209

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 92/242 (38%), Gaps = 28/242 (11%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + +R +L  +     +         K+ +     K   ++ ++  L     SK    +E
Sbjct: 951  LKELRKQLSDVTDSKSSLEKELKELRKQLSDVTGSKSSLEKELRKQLSDVNGSKSSLEKE 1010

Query: 485  AALLLTLINH-----PAILQEQYQELADIRYD----NNELQKLWSFLFSDFVEQKYFLPE 535
               L   ++       ++ +E  ++L+D+         EL++L   L      +     E
Sbjct: 1011 LKELRKQLSDVTGSKSSLEKELRKQLSDVNGSKSSLEKELKELRKQLSDVTDSESSLEKE 1070

Query: 536  EIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYK 586
             + ++L +         + LK+L +Q+ D     ++ E  + ++R+           L K
Sbjct: 1071 -LRKQLSDVTDSKSSLEKELKELRKQLSDVADSKSSLEKELKELRKQLSDVTDSKSSLEK 1129

Query: 587  RFRLLSRQKEE-------IEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAM 637
              + L +Q  +       +EK++ ++  +    A+  + L   L E+  Q+  +   E+ 
Sbjct: 1130 ELKELRKQLSDVAGSKSSLEKELKELRKQLSDVADSKSSLGKELKELRKQLSDVTDSESS 1189

Query: 638  IE 639
            +E
Sbjct: 1190 LE 1191



 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 82/216 (37%), Gaps = 18/216 (8%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + +R +L  +     +      +        +       + ++  L     SK    +E
Sbjct: 732 LKELRKQLSDVNASKASLEKELRKQLSDVTDSKSSLEKELKELRKQLSDVTDSKSSLEKE 791

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              L  L   P+ + +    L        EL++L   L      +     E + ++L + 
Sbjct: 792 ---LKELRKQPSDVTDSKSSLE------KELKELRKQLSDVADSKSSLEKE-LRKQLSDV 841

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
              +    L++++R      A +++++  ++++  +Q   +      L ++ +E+ KQ++
Sbjct: 842 AGSK--SSLEKELRKQLSDVAGSKSSLENELKELRKQLSDVADSKSSLEKELKELRKQLS 899

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            V     A+  + L   L E+  Q+  +   ++ +E
Sbjct: 900 DV-----ADSKSSLEKELKELRKQLSDVTGSKSSLE 930



 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 106/281 (37%), Gaps = 27/281 (9%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKD-QKLRYYYSQAIRDRLQQ------LFQK 438
            ++E   +  +    ++ LE  LK     + D    +    + +R +L          +K
Sbjct: 710 LEKELRKQLSDVAGSKSSLEKELKELRKQLSDVNASKASLEKELRKQLSDVTDSKSSLEK 769

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE--AALLLTLINHPA 496
            + E          +    +++    R   S +   K S +  L+E    L     +  +
Sbjct: 770 ELKELRKQLSDVTDSKSSLEKELKELRKQPSDVTDSKSSLEKELKELRKQLSDVADSKSS 829

Query: 497 ILQEQYQELADIRYDNNEL-QKLWSFLFSDFVEQKYFLPE--EIHQRLCE-----RGFGE 548
           + +E  ++L+D+    + L ++L   L      +     E  E+ ++L +         +
Sbjct: 830 LEKELRKQLSDVAGSKSSLEKELRKQLSDVAGSKSSLENELKELRKQLSDVADSKSSLEK 889

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL--------ALYKRFRLLSRQKEEIEK 600
            LK+L +Q+ D     ++ E  + ++R+               L K+   ++  K  +EK
Sbjct: 890 ELKELRKQLSDVADSKSSLEKELKELRKQLSDVTGSKSSLEKELRKQLSDVNGSKSSLEK 949

Query: 601 QIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEAMIE 639
           ++ ++  +     +  + L   L E+  Q+  +   ++ +E
Sbjct: 950 ELKELRKQLSDVTDSKSSLEKELKELRKQLSDVTGSKSSLE 990



 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 43/370 (11%), Positives = 107/370 (28%), Gaps = 29/370 (7%)

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           L         S         +++ + +    +    D             +        G
Sbjct: 511 LRNEDSPQQSSCADADSKRQRIQPIAQSRKDVNQMRDSSRQLHSITKNCEE---KIRQSG 567

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
           N    +  +   D              +    +   ++   K E    +    +    + 
Sbjct: 568 NTSTAIFHTAQCDEQMSQNHLQDKKKNEKQEMNREKLEASLKGEMRGLNEQLSEMTGSMT 627

Query: 406 IHLKNCINHIKDQKL-RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
           +  K     +      R    + +++  +QL     ++ S      +   +  D  G   
Sbjct: 628 LLEKELKKQLNKVTESRALMEKELKELRKQLSGVTDSKSSLEKELKELRKQLSDVTGSKS 687

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
            L +      K     +   ++L         + ++             EL++L   L  
Sbjct: 688 SLEKELKELRKQLSDVADSLSSL------EKELRKQLSDVAGSKSSLEKELKELRKQLSD 741

Query: 525 DFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
               +     E + ++L +         + LK+L +Q+ D     ++ E  + ++R+   
Sbjct: 742 VNASKASLEKE-LRKQLSDVTDSKSSLEKELKELRKQLSDVTDSKSSLEKELKELRKQPS 800

Query: 580 QALALYKRFRLLSRQKEEIEKQI---AQVTAKGEAEKTAILI-------SILHEVHIQIH 629
                      L ++ +E+ KQ+   A   +  E E    L        S+  E+  Q+ 
Sbjct: 801 DVTDS---KSSLEKELKELRKQLSDVADSKSSLEKELRKQLSDVAGSKSSLEKELRKQLS 857

Query: 630 QIESQEAMIE 639
            +   ++ +E
Sbjct: 858 DVAGSKSSLE 867


>gi|228911826|ref|ZP_04075591.1| hypothetical protein bthur0013_59420 [Bacillus thuringiensis IBL
           200]
 gi|228847823|gb|EEM92712.1| hypothetical protein bthur0013_59420 [Bacillus thuringiensis IBL
           200]
          Length = 167

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 40  WACCPFHDEKTPSFHCNDSKGFYYCF-SCHVKG--DHLSFLSALLGCSFIESVQRLAAIA 96
              CPFHD+K  S   N S    +C+  C      DH S L  L G +  E+   L    
Sbjct: 1   MCKCPFHDDKEDSMVVNVSSDNCWCYAGCGDGKQIDHFSGLMLLHGWTNTEAQNYLLKAL 60

Query: 97  GVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126
            + + +    ++K+   Q  + + ++   D
Sbjct: 61  NLNVNLNRKAMQKEIAKQKVIHKKMQQMKD 90


>gi|322792325|gb|EFZ16309.1| hypothetical protein SINV_06162 [Solenopsis invicta]
          Length = 951

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 91/286 (31%), Gaps = 15/286 (5%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                      + +    ++  ++   ++  +    +        +   K   +  ++ +
Sbjct: 352 SDGEEGEEGGVYRQRYEHAIRELEFTKRKMAQQHEDDLEQLVGLKKQLEKKLADAYEEVE 411

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS---SLVKGKL 476
            +       + R+Q+L  +             +N     ++       Q+    L + K 
Sbjct: 412 EQRQVVGQWKRRVQKLNGEMHDLRLLLEEQTARNNLLEKKQRKFDSETQNLMNDLRQEKA 471

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV----EQKYF 532
            ++   RE  +   +     + Q       +I      L+ L   L         E++  
Sbjct: 472 QRERLAREKEI--AIAEKFTVEQNLSDARLEIELKEERLRTLTQELEELTFGGKTEEEVA 529

Query: 533 LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             ++    L +  +   E L  L  QV+         E +I   R+  ++ +   +R   
Sbjct: 530 QLKKAKHELEKRAKDQEEELDDLAGQVQLLEQAKLRLEMSIEQQRKEMRKEM--QQRDEE 587

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQ 634
           L   +    K++  + ++ E E      L+   HE+  ++  +E Q
Sbjct: 588 LEDVRGNAHKKVKALESQLENEHEERTILLREKHELERRLVALEEQ 633



 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 89/251 (35%), Gaps = 31/251 (12%)

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            + +    +++Q  R    +  + +     Q  + +        ++ AR ++     +  
Sbjct: 430 EMHDLRLLLEEQTARNNLLEKKQRKFDSETQNLMNDLRQEKAQRERLAREKEIAIAEKFT 489

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS-----F 521
           ++ +L   +L     L+E  L           +   QEL ++ +     +++        
Sbjct: 490 VEQNLSDARLE--IELKEERL-----------RTLTQELEELTFGGKTEEEVAQLKKAKH 536

Query: 522 LFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVR---- 575
                 + +    +++  ++   E+    L   +++Q ++        +  + DVR    
Sbjct: 537 ELEKRAKDQEEELDDLAGQVQLLEQAKLRLEMSIEQQRKEMRKEMQQRDEELEDVRGNAH 596

Query: 576 ----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---LISILHEVHIQI 628
                   Q    ++   +L R+K E+E+++  +  +   ++ A    +  +  ++    
Sbjct: 597 KKVKALESQLENEHEERTILLREKHELERRLVALEEQDRTDRAAEAETMQRLKRDLKRTK 656

Query: 629 HQIESQEAMIE 639
             +   + M+E
Sbjct: 657 ALLRDAQTMLE 667


>gi|321469741|gb|EFX80720.1| hypothetical protein DAPPUDRAFT_50846 [Daphnia pulex]
          Length = 1597

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 1/137 (0%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           +E    +   +    E  ++   L     ++     +   +     G  + +  L   +R
Sbjct: 522 KELKDAIGQRKLAMTEYTEVSDKLSELRQQKAKLSRQVRDKEEELEGTLQKMDALRNDLR 581

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-TAIL 617
            A       EA   +++    +   L +R    +R   E  +++ Q    GEA   +  L
Sbjct: 582 RAEKLRRDLEARAEELQADVVREKRLRERAEEHARSLHEDMERLQQKAQAGEAAMNSMEL 641

Query: 618 ISILHEVHIQIHQIESQ 634
              L  +  ++ + E Q
Sbjct: 642 NQELLRLRSELEKQEMQ 658


>gi|313224638|emb|CBY20429.1| unnamed protein product [Oikopleura dioica]
          Length = 1257

 Score = 46.0 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 101/284 (35%), Gaps = 18/284 (6%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R   +   +KL      L D     ++E  +    D    LE    +  N   +QKLR  
Sbjct: 638 RMSLEEEAQKLREAMRDLEDKC--TKSEFDNRQKEDRLVLLERDNADFANRENEQKLRSE 695

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-------SQRLMQSSLVKGKL 476
                   L+   ++   +H    R   +    + +           +   +S  ++ +L
Sbjct: 696 NISRENHELKIQLEQARRDHENRIRTESRQKSDQFEAEIGSLTELLEREKKKSETLEKQL 755

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            +     E       + + + ++E+  EL D +     ++ L   +     E+       
Sbjct: 756 GELHDQHETQQYFATL-YKSQVREKKDELEDEK---ANIEALNGRIQQLEQEKAKMNVAH 811

Query: 537 I-HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +      ++ F + L +L  +           E +   +R+  Q        +  ++R+ 
Sbjct: 812 MKMTEERQQRFNQELDRLANESSGISHREL--EDSKSRIRELEQALFNANDSYEEINREN 869

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           E ++++I ++   G  E  A L +  HE   ++ +  SQE +++
Sbjct: 870 EMLQRKIDELD--GYEEHYANLQNQWHEEKTELEKKLSQEILLK 911


>gi|297623009|ref|YP_003704443.1| peptidoglycan-binding lysin domain-containing protein [Truepera
           radiovictrix DSM 17093]
 gi|297164189|gb|ADI13900.1| Peptidoglycan-binding lysin domain protein [Truepera radiovictrix
           DSM 17093]
          Length = 532

 Score = 46.0 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 8/143 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
              +E+ + L+       E  +L   L +   E++    +    R       E L+   R
Sbjct: 126 DAAREEQEALSA------ENAELREELEAARAERQAQEQQLQDLREENAALQEELETARR 179

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
               A    A  EA   +  +   +   L ++   L  +  E++ Q+          +  
Sbjct: 180 DAEAATAAQAELEAAQRERDEARARVAELSEQLEALRSESAELQAQLQAAEEV--QAQLE 237

Query: 616 ILISILHEVHIQIHQIESQEAMI 638
            L +   E   ++ ++  + A +
Sbjct: 238 TLQAQRQEQTQELQRLREENASL 260


>gi|282876956|ref|ZP_06285805.1| ATP-dependent chaperone protein ClpB [Prevotella buccalis ATCC
           35310]
 gi|281300910|gb|EFA93230.1| ATP-dependent chaperone protein ClpB [Prevotella buccalis ATCC
           35310]
          Length = 863

 Score = 46.0 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 42/140 (30%), Gaps = 10/140 (7%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    KL     S   E      +     +          ++  +  D  +    
Sbjct: 389 AIDLMDEAAAKLRMERDSVPEELDEITRKLKQLEIEREAIKRENDEVKIKQLDKDIAELH 448

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI--------LI 618
            E      R  ++    L  + +   ++ E +  +  +   +G  E+ A         L 
Sbjct: 449 EEE--QSFRAKWESEKNLVNKIQQDKQEMENLRFEADRAEREGNYERVAEIRYGKLKSLQ 506

Query: 619 SILHEVHIQIHQIESQEAMI 638
             +  + +Q+   +  EAM+
Sbjct: 507 DDIDNIKLQLKATQGGEAMV 526


>gi|195035369|ref|XP_001989150.1| GH11564 [Drosophila grimshawi]
 gi|193905150|gb|EDW04017.1| GH11564 [Drosophila grimshawi]
          Length = 2153

 Score = 46.0 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1763 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1822

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1823 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1875

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1876 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1935

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1936 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1995

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1996 KGGKKAIQKLEQRVRELENE 2015


>gi|119195365|ref|XP_001248286.1| hypothetical protein CIMG_02057 [Coccidioides immitis RS]
          Length = 1614

 Score = 46.0 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 66/219 (30%), Gaps = 16/219 (7%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           ++RL    ++   +    GR    ++        +Q    S    G  + + S  E   L
Sbjct: 753 KERLYHEIEELKLQRRFDGRSIAGDSIFERSASRAQDRSASRASDGTRASRMSDTERESL 812

Query: 489 L------------TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                          + +  +  +  + +++I   +   Q+       +    +    + 
Sbjct: 813 ETKNGELRDQVSTLKLENQGLRAQLDEYMSEIETMDRAYQEDMDQAEEEVQTLQLERDQA 872

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I   L E    EL         +        +    + ++   +     +  R L  +  
Sbjct: 873 I--HLAEEREAELQDLKAEAQEEINALEDELDLKTDEGQRMEAELRNQQENLRALQAEMR 930

Query: 597 EIEKQIAQVT--AKGEAEKTAILISILHEVHIQIHQIES 633
              + I ++   A+   +K   +   L + + ++  +E 
Sbjct: 931 SANEGILRLEEDAQNNLQKYKAVQQELEDANRELEALEK 969


>gi|24584696|ref|NP_724001.1| myosin heavy chain, isoform E [Drosophila melanogaster]
 gi|22946661|gb|AAN10961.1| myosin heavy chain, isoform E [Drosophila melanogaster]
          Length = 1962

 Score = 46.0 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|325836796|ref|ZP_08166263.1| replicative DNA helicase [Turicibacter sp. HGF1]
 gi|325491174|gb|EGC93463.1| replicative DNA helicase [Turicibacter sp. HGF1]
          Length = 453

 Score = 46.0 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/161 (8%), Positives = 59/161 (36%), Gaps = 15/161 (9%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           + +     +  E A+L  ++    + ++   +L    + ++  + ++  + +   + K  
Sbjct: 5   QNRHMPHSTDAEQAILGAMLLDEKVCEDVKLKLQPDDFYHHRHRIIYEAMLTLLEQNKGV 64

Query: 533 LPEEIHQRLCERGFGELLKQLD--RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               +   L +      +  ++    + ++   +A T+  I  V +     L + +   L
Sbjct: 65  DVTTVTAFLQDHKRISEIGGVEYILTIYESVATTAHTDHYIDMVLEKSISRLIINRAQEL 124

Query: 591 LSR----------QKEEIEKQ---IAQVTAKGEAEKTAILI 618
           + +            +  E++   ++++    + +K   ++
Sbjct: 125 IEQGYSPETSTQDLIDAAEQKFSGLSRLNQGSDFKKINNVL 165


>gi|148686151|gb|EDL18098.1| EF-hand calcium binding domain 4A, isoform CRA_d [Mus musculus]
          Length = 433

 Score = 46.0 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           S  +E      E + Q L  R          L ++L++Q+ +      +      + R  
Sbjct: 215 SACLEAAAREREGLEQALRRRESEHEREVRGLYEELEQQLGEQRHRRQSQNLPREEQRGH 274

Query: 578 YQQALALYKRFRLLSR---QKEEIEKQIAQ--VTAKGEAEKTAILISILHEVHIQIHQIE 632
               L L  R + L R   ++ E+E+Q+            +   L      +  Q+ Q +
Sbjct: 275 L--ELELQTREQELERAGLRQRELEQQLQARAAEQLEAQAQHIQLQRAYEAIRAQLDQAQ 332

Query: 633 SQEAMIEGFGKMSGR 647
            Q + +E  G+  GR
Sbjct: 333 EQLSRLE--GEAQGR 345


>gi|157118639|ref|XP_001659191.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti]
 gi|108883253|gb|EAT47478.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti]
          Length = 2001

 Score = 46.0 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 87/257 (33%), Gaps = 6/257 (2%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            ++    E E         + ELE  +++    I++++ R     + + +LQ   Q    +
Sbjct: 937  EIELCAEAEEGRARLAARKQELEELMQDLEARIEEEEERVNALSSEKKKLQINIQDLEEQ 996

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                    +K    + Q     + M+  +   +   +  L+E  +L    N  +    + 
Sbjct: 997  LEEEEAARQKLQLEKVQLDAKLKKMEEDVALTEDQNQKLLKEKKILEERANDLSQTLAEE 1056

Query: 503  QE----LADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
            +E    LA ++  +   + +L   L  D  +++     +           E + +   Q+
Sbjct: 1057 EEKAKHLAKLKAKHESTIAELEERLLKDHQQRQESDRSKRKIETEVADLKEQINERRMQI 1116

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +        E  +        +  A     +   R+ E    +I +     +  ++   
Sbjct: 1117 EEMQQQLIKREEELAQTLVRIDEESAAKAAAQKAQRELESQLAEIQEDLEAEKLARSKAE 1176

Query: 618  ISILHEVHIQIHQIESQ 634
                 +++ ++  ++++
Sbjct: 1177 -KQKRDLNEELEALKNE 1192


>gi|258511137|ref|YP_003184571.1| ParB domain-containing protein nuclease [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477863|gb|ACV58182.1| ParB domain protein nuclease [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 422

 Score = 46.0 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 69/230 (30%), Gaps = 23/230 (10%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           +R  Q                         +         S    K   +    +AA L 
Sbjct: 91  ERRSQDDDPIRKAKRAKFLKEYWGVHRGVNQYSRVNQNGESPKTSKDIAEAVGTDAAHLP 150

Query: 490 TLINHPAILQEQYQELADIRYDN-----------NELQKLWSFLFSDFVEQKYFLPEEIH 538
            L+    ++ E    ++  +              +E + L+        E+     +EI 
Sbjct: 151 RLLKLNDLIPELQTLVSASKLGTTAAEQLAHLTPDEQRALFQAFGEAIGERTVAEAKEIR 210

Query: 539 QRLCER------------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           +++ E                  L++L R++  A    A   A + D ++  +QA     
Sbjct: 211 RQIEEERRLREAAEKRVRELEGSLQRLTREIEAAKDEPAALRAALEDTQRELEQARRELA 270

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +    EEI++ +  +  + +  K ++         ++  +  + EA
Sbjct: 271 ERPRIEVVSEEIKRALDDLRKQNDELKASLAEQERLADKLRKEKAAALEA 320


>gi|291295274|ref|YP_003506672.1| ATP-dependent chaperone ClpB [Meiothermus ruber DSM 1279]
 gi|290470233|gb|ADD27652.1| ATP-dependent chaperone ClpB [Meiothermus ruber DSM 1279]
          Length = 854

 Score = 46.0 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 57/180 (31%), Gaps = 16/180 (8%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAI---------LQEQYQELADIRYDNNELQKL 518
            ++L + +  +K    E       ++ P++         ++E+Y+    +R  +  L   
Sbjct: 305 ATTLDEYREIEKDPALERRFQPVFVDEPSLEETVSILRGIKEKYEVHHGVRISDPALIAA 364

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                    ++K                   L+     +          E     +++  
Sbjct: 365 AQLSHRYIADRKLPDKAIDLVDEAAARLRMALESSPESIDALNRRKLQLEIEREALKK-- 422

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-----TAILISILHEVHIQIHQIES 633
           +       R   L ++  E+E +I +  A+ EAE+            L EV  QI Q E 
Sbjct: 423 ETDAESKFRLGELEKEIAELEAEIKKQQAEWEAEREIMQKLRAAQQRLDEVRTQIEQAER 482


>gi|194098199|ref|YP_002001247.1| replicative DNA helicase [Neisseria gonorrhoeae NCCP11945]
 gi|193933489|gb|ACF29313.1| replicative DNA helicase [Neisseria gonorrhoeae NCCP11945]
          Length = 467

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520
            +       +    L       E ++L   ++ +PA        ++   +  +E + ++ 
Sbjct: 5   AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +     E +      + + L         ++L+       L +           + Y +
Sbjct: 64  SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    R R + RQ  E+  +IA+     +      L+        QI   ES     +G
Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171

Query: 641 F 641
           F
Sbjct: 172 F 172


>gi|148238341|ref|YP_001223728.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7803]
 gi|147846880|emb|CAK22431.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7803]
          Length = 821

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 71/231 (30%), Gaps = 7/231 (3%)

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I  I+D+  R      +  R        + +                     Q   Q   
Sbjct: 292 IADIRDESDREGMRVVVELRRDADPDAVLKDLQRRTSLQSNFGAIMLALVDGQP--QQLS 349

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
           ++  L      RE  L+    +     +++ + +  +      LQ++ + +         
Sbjct: 350 LRRLLQTFLDYRELTLIRRTSHALRKAEDRLEVVEGLITALQSLQRVIAMIQEAQDAAAA 409

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--FR 589
                +H  L ER    +L    R++      S   EA  +   +   + L   +     
Sbjct: 410 RASLMVHLDLSERQADAVLAMPLRRLTGLERESLRQEAEELRAERQRLKLLLDNRDQLLD 469

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI---QIHQIESQEAM 637
            L ++  +++K+ A        E    L++          ++ + ++ EA+
Sbjct: 470 ALVQELRQLKKRFATPRRTRLVEGGDHLLAERAASQRPNAELQRRQALEAL 520


>gi|269120616|ref|YP_003308793.1| replicative DNA helicase [Sebaldella termitidis ATCC 33386]
 gi|268614494|gb|ACZ08862.1| replicative DNA helicase [Sebaldella termitidis ATCC 33386]
          Length = 458

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 65/183 (35%), Gaps = 29/183 (15%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E ALL ++   P +L E  + + +  +  N  + ++  +   +          +   L 
Sbjct: 14  AEEALLGSIFIKPDVLSEIIELVTEDDFYKNNYKIIFMEMKEIYRSSAVIDSLLLINSLN 73

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +G   +L+ +  +     L  A   A      + Y Q +    R   + R+  +   +I
Sbjct: 74  RKG---VLEDIGGEQLIYDLTEAVPTAA---NAKMYAQII----RDNAVQRKLIDTGSKI 123

Query: 603 AQVTAKGEAEKTAIL---------ISILHEVH-----IQIH--QIESQEAMIEG---FGK 643
            ++  KG  +   +L         I+   +        ++   ++E  E M +G    G 
Sbjct: 124 VEMAYKGYDDVQTMLDKSESMIFKIAEFKQKKDVITLKELANLELERMEKMPKGSGITGI 183

Query: 644 MSG 646
            SG
Sbjct: 184 SSG 186


>gi|217962033|ref|YP_002340603.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           cereus AH187]
 gi|222098016|ref|YP_002532073.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           cereus Q1]
 gi|229141279|ref|ZP_04269817.1| hypothetical protein bcere0013_43720 [Bacillus cereus BDRD-ST26]
 gi|226723047|sp|B7HRJ3|MUTS2_BACC7 RecName: Full=MutS2 protein
 gi|254766387|sp|B9J054|MUTS2_BACCQ RecName: Full=MutS2 protein
 gi|217064711|gb|ACJ78961.1| MutS2 family protein [Bacillus cereus AH187]
 gi|221242074|gb|ACM14784.1| DNA mismatch repair protein, MutS family [Bacillus cereus Q1]
 gi|228642060|gb|EEK98353.1| hypothetical protein bcere0013_43720 [Bacillus cereus BDRD-ST26]
          Length = 786

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIEQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|157147869|ref|YP_001455188.1| hypothetical protein CKO_03675 [Citrobacter koseri ATCC BAA-895]
 gi|157085074|gb|ABV14752.1| hypothetical protein CKO_03675 [Citrobacter koseri ATCC BAA-895]
          Length = 1100

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 72/215 (33%), Gaps = 19/215 (8%)

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI--- 497
            +     +  ++    +  +  +   +QS+L   +  K    R       + N P +   
Sbjct: 15  PDAKLIAQELEQAKAAKPAQPEAVEALQSALNALEERKGSLERAEQYQQVIDNFPKLSAT 74

Query: 498 LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
           L+ Q   L D             L   +     +      +   +R   R   + L QL 
Sbjct: 75  LRAQLNNLRDEPRSVPPGMSTDALSQEILQVSSQLLDKSRQAQQERERAREIADSLSQLP 134

Query: 555 RQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRL--LSRQKEEIE---------KQ 601
           +Q  DA       E  I          QA  L  +     L  Q +E+E         ++
Sbjct: 135 QQQTDARRQLNEIERRIGTASGNSPLNQAQNLSMQAESARLKAQVDELELAQLSANNRQE 194

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           +A++ ++   +++  L + L  +  Q++    +EA
Sbjct: 195 LARMRSELAEKQSQQLDAWLQALRNQLNSQRQREA 229


>gi|220930120|ref|YP_002507029.1| hypothetical protein Ccel_2740 [Clostridium cellulolyticum H10]
 gi|220000448|gb|ACL77049.1| conserved hypothetical protein [Clostridium cellulolyticum H10]
          Length = 310

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 3/119 (2%)

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIES-VQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
             ++  S    G  + F+      SF E+ V  L    G+         +++EK    L 
Sbjct: 51  NRWFDHSTEKGGLAIDFVQKFYEVSFQEAVVLLLGGEKGIEFTQASESTDEQEKKTFVLP 110

Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
                    F + +K     R     +  E+ +   A     +    D +   R   R+
Sbjct: 111 EANSDMRRVFAYLIKQRFIDRNVLACFAREKLLFEDAKYHNAVFVGFDEKGVARHAHRK 169


>gi|228917190|ref|ZP_04080747.1| hypothetical protein bthur0012_44020 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228935862|ref|ZP_04098672.1| hypothetical protein bthur0009_43070 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823630|gb|EEM69452.1| hypothetical protein bthur0009_43070 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228842391|gb|EEM87482.1| hypothetical protein bthur0012_44020 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 786

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|123490058|ref|XP_001325524.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121908425|gb|EAY13301.1| hypothetical protein TVAG_164100 [Trichomonas vaginalis G3]
          Length = 710

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 95/286 (33%), Gaps = 12/286 (4%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           IR   +  F+K        +   + +  +                       I+ +  + 
Sbjct: 163 IRNNHRNKFKKFYHPKFKELMNEFNQMQKIIDTKLKRHNELKLFIRDLQFIIIQLESFQD 222

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKN--ARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                      + F    T+             A  +D     +  M  S+V  + S + 
Sbjct: 223 MLPVEHDRFFSEPFDPQFTDTQFSKAQIVSMVLAPIKDTITSLKMFMDPSIVTEQASSEI 282

Query: 481 SLREAALLLTLINHPA-ILQEQYQELADIRYDNNELQKL--WSFLFSDFVEQKYFLPEEI 537
              E ++   LI  P+  LQ +Y+       ++ E  K+     +  +  EQK  L  E+
Sbjct: 283 QKIEDSI-KNLIGDPSNRLQARYKSEKGDNMNDEEASKISDLKGIIQELEEQKSQLDSEL 341

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            ++L  +     + ++ R+  +        +  I ++           KR + L ++ +E
Sbjct: 342 QEKLSYKESK--INEITRRSEEWENEKKEIQKEIKNLSSSGNSPENQAKRIKQLEKEVQE 399

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES----QEAMIE 639
            E ++A+       ++         E+  Q+  I++    Q A+I+
Sbjct: 400 KESELAKYDESNTKQQYKENQKKFEELRNQLKTIQTDIIYQRALIQ 445


>gi|119574313|gb|EAW53928.1| myosin, heavy polypeptide 11, smooth muscle, isoform CRA_d [Homo
            sapiens]
          Length = 1266

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 90/271 (33%), Gaps = 22/271 (8%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     +     E E        ++ ELE  L      +++++ R    QA R ++ Q  
Sbjct: 893  QEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQM 952

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                 +        +K    +       + ++  ++          +E  LL        
Sbjct: 953  LDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKLSKERKLLE------E 1006

Query: 497  ILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKYFLPEEIHQRLCER--G 545
             + +    LA+       L KL      + S+        E+     E++ ++L      
Sbjct: 1007 RISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASD 1066

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
            F E +  L  Q+ +  +  A  E  +          +A   +     ++  E+E  I+ +
Sbjct: 1067 FHEQIADLQAQIAELKMQLAKKEEELQAALARLDDEIA---QKNNALKKIRELEGHISDL 1123

Query: 606  TAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                ++E+ A   +     ++  ++  ++++
Sbjct: 1124 QEDLDSERAARNKAEKQKRDLGEELEALKTE 1154


>gi|157892|gb|AAA28687.1| myosin heavy chain [Drosophila melanogaster]
          Length = 1962

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|42783724|ref|NP_980971.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           cereus ATCC 10987]
 gi|81699646|sp|Q72ZJ0|MUTS2_BACC1 RecName: Full=MutS2 protein
 gi|42739654|gb|AAS43579.1| MutS2 family protein [Bacillus cereus ATCC 10987]
          Length = 786

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIEQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|322376596|ref|ZP_08051089.1| hypothetical protein HMPREF0851_00384 [Streptococcus sp. M334]
 gi|321282403|gb|EFX59410.1| hypothetical protein HMPREF0851_00384 [Streptococcus sp. M334]
          Length = 151

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 34/133 (25%)

Query: 8   IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
           I++    I I ++            N +   +          P HD    SF    +   
Sbjct: 3   IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSNTNT 46

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ------T 115
           +  FS  ++GD + F+  + G SF E++  L+            +  ++ + +       
Sbjct: 47  FKWFSRDIQGDVIDFVRLVKGLSFKETLAFLSE------EPFQKEAVQENRERPFNYPLK 100

Query: 116 DLIRLIEVATDFF 128
            +         ++
Sbjct: 101 RIEDSNCSLARYY 113


>gi|296224481|ref|XP_002807607.1| PREDICTED: LOW QUALITY PROTEIN: rho-associated protein kinase 2-like
            [Callithrix jacchus]
          Length = 1703

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 1137 MSEKQLKQENNHLLEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 1196

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 1197 ELKEECEEKTKLGKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 1256

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 1257 EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 1308

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 1309 NKLKD--VQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1366

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1367 NDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1411


>gi|260219645|emb|CBA26490.1| Chaperone protein clpB [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 863

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           ++H  I      +   I   +    K+   L S            I  ++      +   
Sbjct: 374 LSHRYITDRFLPD-KAIDLIDEAASKIKIELDSKPEVMDKLDRRLIQLQIEREAVKKEKD 432

Query: 552 QL-DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           +   ++         + +  I D+ + ++   A  +    +  + +++  QI  +T KG+
Sbjct: 433 EASLKRFELINEEINSLQKEIADLDEIWKAEKATAQGSAQVREEIDKLRTQIESLTRKGD 492

Query: 611 AEKTAIL-ISILHEVHIQIHQIESQE 635
             K A L    L E+  ++ + + QE
Sbjct: 493 LAKVAELQYGKLPELEKRLKEAQDQE 518


>gi|253576949|ref|ZP_04854273.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843680|gb|EES71704.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 226

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 36/182 (19%)

Query: 16  PISNLIGQYVDWDRRKTNAVKGDYWACCPF-HDEKTPS------FHCNDSKGFYYCFSCH 68
            I ++  Q      + ++  + +    CPF H++  P          N     + C+ C 
Sbjct: 4   DILDVADQN-GLIIKPSSQSREEVLCKCPFCHEDSKPGKKRRYYLSLNTKDQVFKCWFCG 62

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
             G  L F+S L G                      P+ + +++ +    +++  A    
Sbjct: 63  ESGGVLRFISLLEGV---------------------PEEQVRQRYRKR--KIVHPA---- 95

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
              L   + K L  +   +  +   +      Y   S   L E   +   +E +     L
Sbjct: 96  -ERLSRNQRKLLRQHTGGKEPNWKLMRERDFAYYMRSMDLLWEQWNEFLETERQGAYLWL 154

Query: 189 LI 190
           +I
Sbjct: 155 II 156


>gi|158285519|ref|XP_001687903.1| AGAP007523-PA [Anopheles gambiae str. PEST]
 gi|157020031|gb|EDO64552.1| AGAP007523-PA [Anopheles gambiae str. PEST]
          Length = 1974

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 94/280 (33%), Gaps = 6/280 (2%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              + + Y +   EK  +      ++    E E         + ELE  +++  + I++++
Sbjct: 914  QEYEKKYQQAMEEKTHLAEQLQAEIELCAEAEEGRARLVARKQELEELMQDLESRIEEEE 973

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R     + + +LQ   Q    +        +K    + Q     + M+  +   +    
Sbjct: 974  ERVNALTSEKKKLQINIQDLEEQLEEEEAARQKLQLEKVQLDAKLKKMEEDVALIEDQNH 1033

Query: 480  PSLREAALLLTLINHPAILQEQYQE----LADIRYDNNE-LQKLWSFLFSDFVEQKYFLP 534
              ++E  LL    N  +    + +E    LA ++  +   + +L   L  D  +++    
Sbjct: 1034 KLVKEKKLLEERANDLSQTLAEEEEKAKHLAKLKVKHESTIAELEERLLKDHQQRQEADR 1093

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +           E + +   Q+ +        E  +        +  A     +   R+
Sbjct: 1094 SKRKIETEVADLKEQINERRMQIEEMQQQLVKREEELAQTLVRIDEESAAKAAAQKTQRE 1153

Query: 595  KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             E    +I +     +  ++        +++ ++  ++++
Sbjct: 1154 LESQLAEIQEDLEAEKLARSKAE-KQKRDLNEELEALKNE 1192


>gi|49478686|ref|YP_038600.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|81696639|sp|Q6HCX6|MUTS2_BACHK RecName: Full=MutS2 protein
 gi|49330242|gb|AAT60888.1| DNA mismatch repair protein, MutS family [Bacillus thuringiensis
           serovar konkukian str. 97-27]
          Length = 786

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|28574239|ref|NP_523587.4| myosin heavy chain, isoform H [Drosophila melanogaster]
 gi|22946667|gb|AAN10966.1| myosin heavy chain, isoform H [Drosophila melanogaster]
          Length = 1962

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|24584714|ref|NP_724009.1| myosin heavy chain, isoform L [Drosophila melanogaster]
 gi|22946670|gb|AAN10969.1| myosin heavy chain, isoform L [Drosophila melanogaster]
          Length = 1936

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|24584716|ref|NP_724010.1| myosin heavy chain, isoform M [Drosophila melanogaster]
 gi|22946671|gb|AAN10970.1| myosin heavy chain, isoform M [Drosophila melanogaster]
          Length = 1936

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|24584704|ref|NP_724005.1| myosin heavy chain, isoform A [Drosophila melanogaster]
 gi|22946665|gb|AAN10964.1| myosin heavy chain, isoform A [Drosophila melanogaster]
          Length = 1962

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|87312249|ref|ZP_01094349.1| hypothetical protein DSM3645_06299 [Blastopirellula marina DSM
           3645]
 gi|87285025|gb|EAQ76959.1| hypothetical protein DSM3645_06299 [Blastopirellula marina DSM
           3645]
          Length = 548

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 60/159 (37%), Gaps = 5/159 (3%)

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           TL+    + +    ++ ++       + L   L            ++I   L +    + 
Sbjct: 234 TLLELNDLAKALKDKVKELGMS----EMLKDKL-EALKNISKGPADKIADALKDGDLKKA 288

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           ++++    +       + E      +Q  + A  + +     ++ K ++++QI Q  A G
Sbjct: 289 IEEMKNLQQKMANGQLSKEEQQALGQQLKEMADKMKQMADAQAKAKADLKQQIEQQKAAG 348

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             E    L   L E+ +Q  Q+   E M E  G+ + ++
Sbjct: 349 NQEAAEKLQRQLDEMEMQNEQMGRMEQMAEQLGEAAEQM 387


>gi|306815727|ref|ZP_07449876.1| replicative DNA helicase, putative [Escherichia coli NC101]
 gi|305851389|gb|EFM51844.1| replicative DNA helicase, putative [Escherichia coli NC101]
          Length = 455

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 7/156 (4%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L  L+       E    L+   +   + + ++  +    V  +      + + L 
Sbjct: 12  AEQAVLGGLMLENERWDEVVLMLSPDDFYVAQHRAIFRAMSELAVNGQPLDLITLSEHLE 71

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +G      +LD     A L   +           Y   +      R L      +   +
Sbjct: 72  HQG------RLDVLGGFAYLAELSKNTPSAANIMAYAGIVVEKSVLRQLQATGNTLIADV 125

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           A        +        L  +       E  EA +
Sbjct: 126 A-APNATSRDVLDTAERRLFALAQNRTLRERTEASL 160


>gi|196034369|ref|ZP_03101778.1| MutS2 family protein [Bacillus cereus W]
 gi|218905777|ref|YP_002453611.1| MutS2 family protein [Bacillus cereus AH820]
 gi|228929599|ref|ZP_04092617.1| hypothetical protein bthur0010_42830 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|226723044|sp|B7JR57|MUTS2_BACC0 RecName: Full=MutS2 protein
 gi|195992911|gb|EDX56870.1| MutS2 family protein [Bacillus cereus W]
 gi|218535887|gb|ACK88285.1| MutS2 family protein [Bacillus cereus AH820]
 gi|228829986|gb|EEM75605.1| hypothetical protein bthur0010_42830 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 786

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|47206494|emb|CAF92339.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1477

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 87/271 (32%), Gaps = 22/271 (8%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           +     +     E E        ++ ELE  L      + D++ R       + ++QQ  
Sbjct: 345 QEQLQAETELFAEAEEMRVRLAAKKQELEEILHEMEARLDDEEERAQALLLDKKKMQQQM 404

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           Q+            +K    +       + ++  ++  +      L+E  L+        
Sbjct: 405 QELEEHLEEEEDARQKLQLEKVTCEGKIKKLEDEILVMEDHNNKLLKERKLME------D 458

Query: 497 ILQEQYQELADIRYDNNELQKLWSF-----------LFSDFVEQKYFLPEEIHQRLCERG 545
            + +    LA+    +  L KL +            L  +   ++     +         
Sbjct: 459 RIADISTNLAEEEEKSKNLTKLKNKHESMISELEVRLKKEEKCRQELDKAKRKLEAESND 518

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             E +  L  Q+ +     A  E  + +     +  +A   +     ++  E+E  I+ +
Sbjct: 519 LQEQIADLQAQIAELKAQLAKKEEELQNALARLEDEMA---QKNNALKKIRELEGHISDL 575

Query: 606 TAKGEAEKTAILISI--LHEVHIQIHQIESQ 634
               ++E+ A   +     ++  ++  ++S+
Sbjct: 576 QEDLDSERAARNKAEKIKRDLGEELEALKSE 606



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 92/283 (32%), Gaps = 18/283 (6%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
                  +  +  ++  +   ++R+ + R     +++ +L   ++     ++D++ +   +
Sbjct: 1042 QAAEDAKLRLEVNMQALKAQFERDLQGRDEMGEEKKRQLIKQVRELETELEDERKQRAQA 1101

Query: 426  QAIRDRL--------QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             A + +L         Q+            +  K  A+ +D +        +       +
Sbjct: 1102 TAAKKKLETDIKDLEGQIETASKGRDEAIKQLRKLQAQMKDFQRELDDAHAAREEVLSAA 1161

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            K+   +  +L   L+     LQE    + +        Q L S LF    +         
Sbjct: 1162 KESEKKAKSLEAELMQ----LQEVTWLIPNTASAGGTRQTLRSGLFFFLQDLAAAERARK 1217

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA----LALYKRFRLLSR 593
                      + L                 EA I  + +  ++       L  R R  S+
Sbjct: 1218 QAEAERDELADELASNASGKSALADEKRRLEARIAQLEEELEEEQGNMELLNDRLRKSSQ 1277

Query: 594  QKEEIEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            Q +++  ++   + T++        L     E+  ++ ++E+Q
Sbjct: 1278 QVDQLNNELQTERSTSQKNESARQQLERQNKELKAKLQEMENQ 1320


>gi|157156805|ref|YP_001464372.1| DnaB family helicase [Escherichia coli E24377A]
 gi|157078835|gb|ABV18543.1| helicase, DnaB family [Escherichia coli E24377A]
          Length = 455

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 7/156 (4%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L  L+       E    L+   +   + + ++  +    V  +      + + L 
Sbjct: 12  AEQAVLGGLMLENERWDEVVLMLSPDDFYVAQHRAIFRAMSELAVNGQPLDLITLSEHLE 71

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +G      +LD     A L   +           Y   +      R L      +   +
Sbjct: 72  HQG------RLDVLGGFAYLAELSKNTPSAANIMAYAGIVVEKSVLRQLQATGNTLIADV 125

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           A        +        L  +       E  EA +
Sbjct: 126 A-APNATSRDVLDTAERRLFALAQNRTLRERTEASL 160


>gi|302840018|ref|XP_002951565.1| hypothetical protein VOLCADRAFT_92191 [Volvox carteri f.
           nagariensis]
 gi|300263174|gb|EFJ47376.1| hypothetical protein VOLCADRAFT_92191 [Volvox carteri f.
           nagariensis]
          Length = 2748

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 80/284 (28%), Gaps = 12/284 (4%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                    A      ES   +    +   E       +    L+         +K ++ 
Sbjct: 669 QTADAGQAHAMASSRWESDQHLQEQVREVEERLKAREAELDERLKAREAELEGRLKARE- 727

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ------SSLVKG 474
                + ++ R  +L ++ + E +      K+N         +    +      S     
Sbjct: 728 -AELDERLKAREAELEEQVMRERAANDSLAKQNRALYSTLEETLSAAEHEVHDTSQKEVS 786

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L +   LRE AL        A+ +   +          +   L        VE      
Sbjct: 787 QLKEDLELRERALSAVQAEFSALRRRHEEMSTAAEAARRDN-ALRDGRLRREVEVATQDA 845

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +  +L +       +QL  +  +     AT        ++    A  L +    L R+
Sbjct: 846 AILAAQLTK--LQREHQQLHSRKAEKDRQLATLAKRADAQQEQLTAAERLAQEQAALVRE 903

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            E     +    A  +    A   +       Q+ Q+E + A++
Sbjct: 904 LESRATLLRNRNAALDRAVAAEKEAR-QAAQEQVRQMEEEIALL 946


>gi|256841562|ref|ZP_05547069.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737405|gb|EEU50732.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 342

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 44/186 (23%), Gaps = 31/186 (16%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA------ 96
            P   + TPS   +     +  F     G  +  +    GC+   ++ RL          
Sbjct: 36  SPLRQDDTPSLKVDYGVNLWCDFGTGEGGSLIDLVMKQYGCNAYGAISRLEQGYYSGNTF 95

Query: 97  ---GVPLPVVDPKIEKKEKIQTDLIRLI---------------------EVATDFFHHSL 132
              G  +   +P   ++ K     I +                      EVA D+     
Sbjct: 96  SFQGKNITERNP-AREERKRPASPIEIRKIQPLQNPALINYLKSRGIAPEVAADYVQEMY 154

Query: 133 KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDG 192
                K L     +     + +           +   R     K      + E  +    
Sbjct: 155 YRVNGKPLFALAFKNDAGGYELRNPGYKGCTSPKDITRIQFAGKRNDACFVFEGFMDYLS 214

Query: 193 DNSATS 198
             +   
Sbjct: 215 FLTIRH 220


>gi|254292465|ref|YP_003058488.1| ABC transporter [Hirschia baltica ATCC 49814]
 gi|254040996|gb|ACT57791.1| ABC-type uncharacterized transport system involved in gliding
           motility auxiliary component protein [Hirschia baltica
           ATCC 49814]
          Length = 628

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 55/184 (29%), Gaps = 31/184 (16%)

Query: 487 LLLTLINHPAILQEQYQE---------LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           +L  L+N P    +  ++         ++D    ++          S             
Sbjct: 423 VLAALVNDPETQHQHLEKSVQSVDIILISDTDIFDDTF------YVSPNGGAPVADNAVF 476

Query: 538 -HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
               L      + L  L  +   A   +   +       + Y++   L  R +    +  
Sbjct: 477 VMNALDNLSGSDALVNLRSRAPSARPMTRVNKMRDEARERLYEEQEILQLRLKQTEARLN 536

Query: 597 EIEKQ------IAQVTA--KGEAEKTAILIS---ILHEVHIQIHQIESQ-EAMIEGFGKM 644
           E+         ++      + +  +   L        E+  ++ ++E +  A I+    +
Sbjct: 537 ELRAAGAGGGLLSHSGDFDEVDQAEAEELTRFRGEAIEIRQRLREVEREFRADID---LL 593

Query: 645 SGRL 648
           SGRL
Sbjct: 594 SGRL 597


>gi|159125506|gb|EDP50623.1| DNA repair protein Rad50 [Aspergillus fumigatus A1163]
          Length = 1303

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 101/280 (36%), Gaps = 30/280 (10%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-------QKLRYYYSQAIR 429
            ++      W R ++    +   E  +  +     +N +++       +  +    +A+ 
Sbjct: 717 RAVSTAYDTWTRLSKTEIPDLEKEEDQYALQRDELLNQLENHDKIVSEKIEKKRDVEALS 776

Query: 430 D------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM----QSSLVKGKLSKK 479
                  R +   +   ++        + N   R  +   + +     ++  +K  LSK 
Sbjct: 777 KTVNTIVRYESEIRTIRSQIQDLSSNQQDNTATRTLEDIQEEIAGIGDKTRALKKTLSKL 836

Query: 480 PSLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            + RE A   T +N+  + L++   +L ++++       L + +  ++        E I 
Sbjct: 837 INDREQA--RTEMNNLELQLRDARSKLDNVKFQLERKSDLLARI-EEYKNFNNQQREAIT 893

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           +   +R   EL  +L +        S   EA   +++QG  Q            RQ +  
Sbjct: 894 KA--DRDIEELTPELLKYQAQYDDISQRVEAREREMQQGISQLSERI-------RQLDLA 944

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            ++I     +G   +       L  +  +I Q+E+++A I
Sbjct: 945 TEEIDSYNERGGPSQLERSRRELQTIEAEISQLEAEQANI 984


>gi|157118641|ref|XP_001659192.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti]
 gi|108883254|gb|EAT47479.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti]
          Length = 1888

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 87/257 (33%), Gaps = 6/257 (2%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            ++    E E         + ELE  +++    I++++ R     + + +LQ   Q    +
Sbjct: 824  EIELCAEAEEGRARLAARKQELEELMQDLEARIEEEEERVNALSSEKKKLQINIQDLEEQ 883

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                    +K    + Q     + M+  +   +   +  L+E  +L    N  +    + 
Sbjct: 884  LEEEEAARQKLQLEKVQLDAKLKKMEEDVALTEDQNQKLLKEKKILEERANDLSQTLAEE 943

Query: 503  QE----LADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
            +E    LA ++  +   + +L   L  D  +++     +           E + +   Q+
Sbjct: 944  EEKAKHLAKLKAKHESTIAELEERLLKDHQQRQESDRSKRKIETEVADLKEQINERRMQI 1003

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +        E  +        +  A     +   R+ E    +I +     +  ++   
Sbjct: 1004 EEMQQQLIKREEELAQTLVRIDEESAAKAAAQKAQRELESQLAEIQEDLEAEKLARSKAE 1063

Query: 618  ISILHEVHIQIHQIESQ 634
                 +++ ++  ++++
Sbjct: 1064 -KQKRDLNEELEALKNE 1079


>gi|52140954|ref|YP_085875.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           cereus E33L]
 gi|196042123|ref|ZP_03109407.1| MutS2 family protein [Bacillus cereus NVH0597-99]
 gi|228948276|ref|ZP_04110559.1| hypothetical protein bthur0007_44020 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229124117|ref|ZP_04253309.1| hypothetical protein bcere0016_44020 [Bacillus cereus 95/8201]
 gi|81685978|sp|Q633P2|MUTS2_BACCZ RecName: Full=MutS2 protein
 gi|51974423|gb|AAU15973.1| DNA mismatch repair protein, MutS family [Bacillus cereus E33L]
 gi|196027059|gb|EDX65682.1| MutS2 family protein [Bacillus cereus NVH0597-99]
 gi|228659419|gb|EEL15067.1| hypothetical protein bcere0016_44020 [Bacillus cereus 95/8201]
 gi|228811263|gb|EEM57601.1| hypothetical protein bthur0007_44020 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 786

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|269926920|ref|YP_003323543.1| replicative DNA helicase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790580|gb|ACZ42721.1| replicative DNA helicase [Thermobaculum terrenum ATCC BAA-798]
          Length = 446

 Score = 46.0 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 29/76 (38%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           KL       E +LL +L+     + +    L    +      +++  +   +  ++    
Sbjct: 7   KLPPHSIEAEQSLLGSLLLDRDAIIKVAPFLRPEDFYREAHARIYEAILDLYNRREPPDL 66

Query: 535 EEIHQRLCERGFGELL 550
             IH+ L  RG+ E +
Sbjct: 67  VTIHEELSRRGYAEEV 82


>gi|327284986|ref|XP_003227216.1| PREDICTED: serine/threonine-protein kinase TAO1-like isoform 2
           [Anolis carolinensis]
          Length = 864

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 89/309 (28%), Gaps = 42/309 (13%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                   +   + +     +     K+     +    +         K+       +  
Sbjct: 450 QMQEHEQDSELREQMSGYKRMRRQHQKQLMALENKLKTEMDEHRLRLDKDL------ETQ 503

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-RDQKGPSQRLMQSSLVKGKLSKK 479
           R  ++  +   L++       E        KK  +H + Q+         S  +    +K
Sbjct: 504 RNNFAAEMEKLLKKHQAAMEKEAKVMANEEKKFQQHIQGQQKKELNSFLESQKREYKLRK 563

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             L+E+  L          +              + + L + L            + + +
Sbjct: 564 EQLKESKELQIKKQFQDTCK----------IQTRQYKALRNHLLE---TTPKSEHKAVLK 610

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-------- 591
           RL E    +L    ++         +T    + + ++   Q L +  +  L         
Sbjct: 611 RLKEEQTRKLAILAEQYDHSINEMLSTQALRLDEAQEAECQVLKMQLQQELELLNAYQSK 670

Query: 592 ---------SRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                     R+  E+E+++     +  +   E+   L +   E    + + +++E  IE
Sbjct: 671 IKMQAEAQHDRELRELEQRVSLRRALLEQKIEEEMLALQNERTERIRSLLERQARE--IE 728

Query: 640 GFGKMSGRL 648
            F   S RL
Sbjct: 729 AFDSESMRL 737


>gi|326511825|dbj|BAJ92057.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 914

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 4/131 (3%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + I   +          +   + R   +    
Sbjct: 393 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALEREKDK-ASKARLVDVRKEL 451

Query: 567 TEANI--VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHE 623
            +       ++  Y++        R L +++EE++  + +   + +  + A L    L E
Sbjct: 452 EDLRDKLQPLQMKYRKEKERIDEIRSLKQRREELQFTLQEAERRMDLARVADLRYGALQE 511

Query: 624 VHIQIHQIESQ 634
           V   I ++E +
Sbjct: 512 VDAAIARLEGE 522


>gi|302503244|ref|XP_003013582.1| hypothetical protein ARB_00029 [Arthroderma benhamiae CBS 112371]
 gi|291177147|gb|EFE32942.1| hypothetical protein ARB_00029 [Arthroderma benhamiae CBS 112371]
          Length = 1120

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 58/148 (39%), Gaps = 16/148 (10%)

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
           P +L +     A+       L++L   L +   E +     ++ Q   E+ + +LL++L+
Sbjct: 241 PQMLDDGEAAGAEFE---GSLKQLAERLKALQQENESLDK-QLSQ--EEKEYEQLLRELE 294

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALY--------KRFRLLSRQKEEIEKQIAQVT 606
            Q  D        +    D+R+   +  ++         KR +LL +  +E E++  +  
Sbjct: 295 DQRNDLKQRVKEKDDATGDLRKHINKLESINRTVQNEKSKREKLLQQ--KEAERKKRRED 352

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
                E+   +   L  +  +  +I  +
Sbjct: 353 IVRWNEREIEIKDELANLQKEKTRIGEE 380



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 71/220 (32%), Gaps = 6/220 (2%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +   L   Y       +         E SG     K++   R   G S  +  S + +  
Sbjct: 186 RGPPLIQAYVPKAAAIVSPSAPVMSREQSGGTAQAKRSGGGRRSIG-STSVQDSGVPQML 244

Query: 476 LSKKPSLREAA-LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
              + +  E    L  L      LQ++ + L   +    E +  +  L  +  +Q+  L 
Sbjct: 245 DDGEAAGAEFEGSLKQLAERLKALQQENESLDK-QLSQEEKE--YEQLLRELEDQRNDLK 301

Query: 535 EEIHQRLCERG-FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           + + ++    G   + + +L+   R      +  E  +       ++      R+     
Sbjct: 302 QRVKEKDDATGDLRKHINKLESINRTVQNEKSKREKLLQQKEAERKKRREDIVRWNEREI 361

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           + ++    + +   +   E T  L     ++  +  +++ 
Sbjct: 362 EIKDELANLQKEKTRIGEESTTKLEEYRRKITEEQGEMKQ 401


>gi|301778054|ref|XP_002924447.1| PREDICTED: TATA element modulatory factor-like [Ailuropoda
           melanoleuca]
 gi|281342539|gb|EFB18123.1| hypothetical protein PANDA_013785 [Ailuropoda melanoleuca]
          Length = 1089

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 63/175 (36%), Gaps = 7/175 (4%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +   Q      KL+     +E  L    ++   + ++     A +     EL  L  
Sbjct: 609 GKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKNRSIQAALDSAYKELTDLHK 668

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +  +        + + +  +   EL   L++   +A     T    + D+R   Q+
Sbjct: 669 A---NAAKDSEAQEAALRREIKAK--EELSAALEKAQEEARQQQETLAIQVGDLRLALQR 723

Query: 581 AL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           A  A  ++   L  +  E+++++ +   +   E +  + S    +  QI  +++ 
Sbjct: 724 AEQAAARKEDYLRHEISELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 777


>gi|281365095|ref|NP_001162990.1| myosin heavy chain, isoform N [Drosophila melanogaster]
 gi|272407068|gb|ACZ94276.1| myosin heavy chain, isoform N [Drosophila melanogaster]
          Length = 1949

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|229164657|ref|ZP_04292529.1| hypothetical protein bcere0009_53770 [Bacillus cereus R309803]
 gi|228618811|gb|EEK75765.1| hypothetical protein bcere0009_53770 [Bacillus cereus R309803]
          Length = 738

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 11/82 (13%)

Query: 42  CCPFHDEKTPSFH---CNDSKGFYYCFS--CHVKG-DHLSFLSAL-----LGCSFIESVQ 90
           CC FH++  PS       D K  Y+C+S  C  +    +              +F ++V 
Sbjct: 366 CCHFHNDVNPSATLYEMRDGKKMYFCYSSNCAKQYRSVIDVAMETLSTPEQHVTFSQTVD 425

Query: 91  RLAAIAGVPLPVVDPKIEKKEK 112
            LA   GV L +   + EK ++
Sbjct: 426 FLAQKLGVTLDMDAYQKEKYQE 447


>gi|254493365|ref|ZP_05106536.1| replicative DNA helicase [Neisseria gonorrhoeae 1291]
 gi|226512405|gb|EEH61750.1| replicative DNA helicase [Neisseria gonorrhoeae 1291]
          Length = 468

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520
            +       +    L       E ++L   ++ +PA        ++   +  +E + ++ 
Sbjct: 5   AAMPPEDREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +     E +      + + L         ++L+       L +           + Y +
Sbjct: 64  SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    R R + RQ  E+  +IA+     +      L+        QI   ES     +G
Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171

Query: 641 F 641
           F
Sbjct: 172 F 172


>gi|83589007|ref|YP_429016.1| primary replicative DNA helicase [Moorella thermoacetica ATCC
           39073]
 gi|83571921|gb|ABC18473.1| primary replicative DNA helicase [Moorella thermoacetica ATCC
           39073]
          Length = 444

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 48/150 (32%), Gaps = 12/150 (8%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++  +    E ++L  ++     L    + L    +     + ++  +       +    
Sbjct: 7   RVPPQSIEAEQSVLGAIMLDREALYAVLETLKVDDFYREAHRMIYRAILDLNERGEAVDL 66

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L  RG      +L+     A L S T +   V     Y + +A     R L + 
Sbjct: 67  LTVTEELRRRG------ELEAAGGVAYLTSLTGDVPSVANAGYYARLVAEKAALRSLVQ- 119

Query: 595 KEEIEKQIAQV--TAKGEAEKTAILISILH 622
                 QI ++  +  G  ++       L 
Sbjct: 120 ---AASQITEMAFSESGSVDQILDEAERLI 146


>gi|312379743|gb|EFR25924.1| hypothetical protein AND_08308 [Anopheles darlingi]
          Length = 1885

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/257 (11%), Positives = 85/257 (33%), Gaps = 6/257 (2%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            ++    E E         + ELE  +++  + I++++ R       + +LQ   Q    +
Sbjct: 818  EIELCAEAEEGRARLSARKQELEELMQDLESRIEEEEDRVNTLTNEKKKLQVNIQDLEEQ 877

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                    +K    + Q     + ++      +      ++E  LL    N  +    + 
Sbjct: 878  LEEEETARQKLQLEKVQLDAKLKKLEEDTALIEDQNHKLVKEKKLLEERANDLSQTLAEE 937

Query: 503  QE----LADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
            +E    LA ++  +   + +L   L  D  +++     +           E + +   Q+
Sbjct: 938  EEKAKHLAKLKVKHESTIAELEERLLKDHQQRQESDRSKRKIETEVADLKEQINERRIQI 997

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +        E  +  V     +        +   R+ E    +I +     +  ++   
Sbjct: 998  EEMQQQLVKREEELAQVMVRIDEESTAKAAAQKTQRELESQLAEIQEDLEAEKIARSKAE 1057

Query: 618  ISILHEVHIQIHQIESQ 634
                 +++ ++  ++++
Sbjct: 1058 -KQKRDLNEELEALKNE 1073



 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 79/261 (30%), Gaps = 18/261 (6%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            +E + RS    D   E+E   K     I+  + +    QA  DRL +  +K  +E     
Sbjct: 1293 QELKKRSDEESDMAKEMEESKKKMNKDIETLQRQIQELQATNDRLDKSKKKIQSELEDAT 1352

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA-----ILQEQY 502
               +            Q+     L + K   +   +E                 + +E  
Sbjct: 1353 IELETQRTKVLDLEKKQKNFDKVLAEEKAISEQHAQERDAAEREAREKETKVLSLTRELD 1412

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
            +    I     + + L + L      Q             +R     L +L  Q      
Sbjct: 1413 EAFEKIDELEQKRKALQNELDELANTQGTADKNVHELEKAKRALESQLAELKAQ------ 1466

Query: 563  WSATTEANIVDVRQGYQQALALYKRFRLLSRQKE---EIEKQIAQVTAKGEAEKTAILIS 619
                 E    D++      L L    + L  Q E   + +++ ++   +G  +    L +
Sbjct: 1467 ----NEELEDDLQLTEDAKLRLEVNMQALRAQFERDIQAKEEQSEEKRRGLVKALRDLEA 1522

Query: 620  ILHEVHIQIHQIESQEAMIEG 640
             L E   Q     + +  +EG
Sbjct: 1523 ELDEERKQRAAAVAAKKKLEG 1543


>gi|257438300|ref|ZP_05614055.1| toprim domain protein [Faecalibacterium prausnitzii A2-165]
 gi|257199262|gb|EEU97546.1| toprim domain protein [Faecalibacterium prausnitzii A2-165]
          Length = 636

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 43/142 (30%), Gaps = 30/142 (21%)

Query: 3   YPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           Y ++ I        + + +  Q     R                HD    S     +K  
Sbjct: 6   YTQEQIDRA-NQADLVSFLQSQGEQLTRAGNEYRWKR-------HD----SLTVRGNK-- 51

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRL---------------AAIAGVPLPVVDPK 106
           +Y  S    G  + F+    G SF E+V+ L               A+++   LP  +  
Sbjct: 52  WYRHSQSKGGGPVDFVMEFFGKSFTEAVELLTGEKGAAPPPDRPCPASLSDFRLPPPNSD 111

Query: 107 IEKKEKIQTDLIRLIEVATDFF 128
                   T   R+ E  T FF
Sbjct: 112 NRTARNYLTTARRIDEDVTGFF 133


>gi|260795120|ref|XP_002592554.1| hypothetical protein BRAFLDRAFT_118903 [Branchiostoma floridae]
 gi|229277775|gb|EEN48565.1| hypothetical protein BRAFLDRAFT_118903 [Branchiostoma floridae]
          Length = 3563

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/316 (11%), Positives = 97/316 (30%), Gaps = 19/316 (6%)

Query: 328  LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
             +      +  L                  D +S +         ++   +  LV++   
Sbjct: 1838 QQYMLSEAESQLQTTNERLSSLQKEHDDLLDQNSKLHRLYHDKLTEVEQLNSDLVEVRGM 1897

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRY--YYSQAIRDRLQQLFQKYITEHSG 445
             E  +    +       E+      + I++ +LR      + +R R+++L      E   
Sbjct: 1898 AEINSAKLQSNISILNEEVEALKSKHKIQEGQLRDRESEIEELRRRIREL------EAEN 1951

Query: 446  YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
                 K     R+    +  + +        + +    E  L         I   Q   L
Sbjct: 1952 EALRKKIADLRRELDDQTANMERYQREARDANSEVERLEQLLAQ---RESDIRGLQSDLL 2008

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +     N  + K+ +   +    ++     ++   L      E   +L     +A    +
Sbjct: 2009 SARDEVN--ITKMKTTEITRAESEQLSSQMKLSNDLQ-MALNEKQGRLGAMEAEARKLRS 2065

Query: 566  TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
              E +  D  + + +   L  + R +  +   + +++ Q     + +    L   L ++ 
Sbjct: 2066 DLEISRRDNEEKFAEINGLKNKTRDMESELSGLNQKLYQ-----DKQANRSLQEKLDDLQ 2120

Query: 626  IQIHQIESQEAMIEGF 641
             +++++  +    EG+
Sbjct: 2121 FEMNRLRRELQEKEGY 2136



 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/282 (8%), Positives = 88/282 (31%), Gaps = 36/282 (12%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
              K  +   +   +  ++     ++  +     ++  E+        +   D   R    
Sbjct: 2131 QEKEGYITSMETKMSNLESSVVGQSSEKDGKIQEQMEEIRRLRMKIESLNDDMTERERKM 2190

Query: 426  QAIRDRLQQL-------FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    ++L       F +     +          +        +  ++S   + K   
Sbjct: 2191 LDLAREKEELQGQYEFYFSETSKLQTQVTEIQTVQTQMGGSTEALEDELESLRRRLKSDN 2250

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEI 537
            + + +EA              E ++ + ++  + N   +KL        + Q     E++
Sbjct: 2251 EHANQEA-------------FELHRRITELELERNTATEKLKHM--EVNMSQGSGEVEKL 2295

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             Q+L          +L             ++ + +  ++   Q L+  +  +LLS     
Sbjct: 2296 RQQLRRAEQDSSNTELRYNEMHKVNERLRSDMDDILHQRDIAQRLSKEQEAKLLS----- 2350

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            + +++  +             + + ++  ++  ++++  +++
Sbjct: 2351 LSQRLRHLE--------EQTRTEILDLQSKLRNLQNEYQLLD 2384


>gi|195342751|ref|XP_002037962.1| GM18554 [Drosophila sechellia]
 gi|194132812|gb|EDW54380.1| GM18554 [Drosophila sechellia]
          Length = 622

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 72/214 (33%), Gaps = 17/214 (7%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R   +  + + L++L +             ++     D +   Q L +    K ++  + 
Sbjct: 178 RKKLNDDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQE 237

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                 +  T         E    L+     + +L++    L + + EQ     +EI   
Sbjct: 238 INESRRIKQT------EYSEIDGRLSSE--YDAKLKQSLQELRAQYEEQMLINRDEIQAL 289

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             ++        + R    A   S +T  +I ++R    +   L      L +   ++  
Sbjct: 290 YEDK--------IQRLQEAAARTSNSTHKSIEELRSTRVRIEGLNAHIHDLEQANADLNS 341

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +I ++  + + ++       +  +  ++ ++  +
Sbjct: 342 RIRELERQLDNDR-ERHGQEIDLLEKELVRLREE 374


>gi|24584712|ref|NP_724008.1| myosin heavy chain, isoform K [Drosophila melanogaster]
 gi|22946669|gb|AAN10968.1| myosin heavy chain, isoform K [Drosophila melanogaster]
          Length = 1936

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824


>gi|163848669|ref|YP_001636713.1| ATP-dependent chaperone ClpB [Chloroflexus aurantiacus J-10-fl]
 gi|222526605|ref|YP_002571076.1| ATP-dependent chaperone ClpB [Chloroflexus sp. Y-400-fl]
 gi|163669958|gb|ABY36324.1| ATP-dependent chaperone ClpB [Chloroflexus aurantiacus J-10-fl]
 gi|222450484|gb|ACM54750.1| ATP-dependent chaperone ClpB [Chloroflexus sp. Y-400-fl]
          Length = 861

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 69/204 (33%), Gaps = 8/204 (3%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++K+I + +   R ++           +  +++    + +      + + AL+   +   
Sbjct: 321 YRKHIEKDAALERRFQPVMVDPPSVEDTISILRGLKERYETHHGVRITDGALIAAAMLSD 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + SD  E        +   +         K+ D+
Sbjct: 381 RYISDRFLPDKAIDLIDEAAARLRMEITSDPQELDDLKRRIMQLEIEREALR---KEKDQ 437

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEA 611
             ++         AN+ + R   +  +   ++     +Q +E        I Q   + + 
Sbjct: 438 ASKERLEKLEQELANLREQRSALEAQIQRERQELERIQQLKEKIEQTRAAIEQAQRQYDY 497

Query: 612 EKTAIL-ISILHEVHIQIHQIESQ 634
            K A L    L  +  ++   E+Q
Sbjct: 498 NKAAELQYGTLVSLERELQAAEAQ 521


>gi|330934858|ref|XP_003304741.1| hypothetical protein PTT_17390 [Pyrenophora teres f. teres 0-1]
 gi|311318543|gb|EFQ87163.1| hypothetical protein PTT_17390 [Pyrenophora teres f. teres 0-1]
          Length = 2221

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 98/286 (34%), Gaps = 23/286 (8%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              +R   ++A  +L  ES        +R+ E        +      +         D   
Sbjct: 865  DKLRMDLQSAERRLEDESAEHKRATQQRDYERMEAQRRIDDLITARNSAEVKAATADST- 923

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR---LMQSSLVKGKLS 477
                 Q +  R++ L  +  T          +     +Q   S+    + Q S +K KL 
Sbjct: 924  ----RQQLEQRIKDLQNQLQTAEERVAALQPRPDSTEEQDSASREEELIAQVSELKRKLE 979

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            +K    EA +   +     I QE    L          ++L   L +   ++K     ++
Sbjct: 980  RKEEDLEA-VTAQIAGFQDIAQEAENRLQTF---VEAHERLQEQL-NLAEQEKDATINDL 1034

Query: 538  HQRLCE---------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             QR+ +             EL  Q ++          T EA I+ ++       A  +  
Sbjct: 1035 QQRVNDISSELATSSTELTELRGQHEQDTLVLKQEKETLEAEIIRLQNDMADYKAEAENQ 1094

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                + + EI ++ AQ   + E +K A  +  L EV  Q +++++Q
Sbjct: 1095 TQYVKTQAEIAER-AQKDYEHEFQKHAESMQKLREVRDQYNELQTQ 1139



 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/246 (8%), Positives = 75/246 (30%), Gaps = 34/246 (13%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + ++     L ++Y    +   +      +       ++  +QS   +    +      
Sbjct: 755 IKLLQSEKDSLQERYNKVQATMAQQDDNLVKATQNAAEAEARLQSLQGEMVQLRASQQMS 814

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           A +   L      L  +   L+ +      L+       ++   +     +++   L   
Sbjct: 815 ATIEARLKERNQELMTERDRLSSMVSSIQSLRNEAELATAESRRELQNSVDKLRMDLQSA 874

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-----------LLSR 593
                 ++L+ +  +    +   +   ++ ++     +                   L +
Sbjct: 875 E-----RRLEDESAEHKRATQQRDYERMEAQRRIDDLITARNSAEVKAATADSTRQQLEQ 929

Query: 594 QKEEIEKQIAQVTA--------------KGEAEKTAILISILHEVHIQIHQ----IESQE 635
           + ++++ Q+                   +  A +   LI+ + E+  ++ +    +E+  
Sbjct: 930 RIKDLQNQLQTAEERVAALQPRPDSTEEQDSASREEELIAQVSELKRKLERKEEDLEAVT 989

Query: 636 AMIEGF 641
           A I GF
Sbjct: 990 AQIAGF 995


>gi|301056059|ref|YP_003794270.1| MutS family DNA mismatch repair protein [Bacillus anthracis CI]
 gi|300378228|gb|ADK07132.1| DNA mismatch repair protein, MutS family [Bacillus cereus biovar
           anthracis str. CI]
          Length = 786

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|255073513|ref|XP_002500431.1| kinesin-like protein [Micromonas sp. RCC299]
 gi|226515694|gb|ACO61689.1| kinesin-like protein [Micromonas sp. RCC299]
          Length = 1309

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 70/216 (32%), Gaps = 15/216 (6%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
                 LQQ  +  + + +     ++   +     G     +   + K    +   L E 
Sbjct: 381 DDAARGLQQRLRSRLLQINDARETYRDQIQSTGADGIDPNNIGLQMAKLHELEGQLLNER 440

Query: 486 ALLLTLINHPAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                L+     L E+ Q L  +   N  E ++L   L +           EI + L E 
Sbjct: 441 GDKAELLAEKEALIERLQRLNGMDKANLAEKEELQKALIA-----SEEDRLEIARALVEA 495

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                   L  +     L        +  V +   +A+A   R +   +   E++ +   
Sbjct: 496 QLEANEAALQAEKTRHEL--------VERVHELEARAIASEVRVKGAEQSYGELQNKAGS 547

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           +  + +  K   L     E+  ++ +I ++ A + G
Sbjct: 548 LNVENQRIK-EELDQTRQELEKELKEIRTEHAEVSG 582


>gi|254521524|ref|ZP_05133579.1| putative chromosome segregation SMC protein [Stenotrophomonas sp.
           SKA14]
 gi|219719115|gb|EED37640.1| putative chromosome segregation SMC protein [Stenotrophomonas sp.
           SKA14]
          Length = 609

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 106/369 (28%), Gaps = 25/369 (6%)

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           +   + L   L   +  LL      ++     +    + A   +                
Sbjct: 99  EMPATGLSPLLNVIEENLLTPGVRDLIADKKQEHQAWQIALALLSRDQECRFDHVLEWRS 158

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK----------RETENRSFNTPDER 401
            LS  E P   +    +    + ++ ++   +   +          R  E    +   E 
Sbjct: 159 SLSDSESPARGLNRTERLETLRALLNAIDPSEQTLRIDIAAMSESSRSREQEIGHRAWEI 218

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
            +L   L   +    D+  +      I  R  Q      T+  G       ++  +  + 
Sbjct: 219 RKLRKQLLEVLGVTDDELSQGTLGVEILRRAAQKRLAAETKSDGASATSDLDSVRQAHES 278

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ--EQYQELADIRYDNNELQKLW 519
               + +     G+      + E A+      +P +    ++ +       +    + L 
Sbjct: 279 AQSEVARVQANIGRQEAVIPVIERAISAIKGEYPTLAYSLKEAENYPCPICEVPIDRVLA 338

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVR-- 575
           S      +  K    E    RL    +   +  ++L                   D    
Sbjct: 339 S---QCGLSHKVPDLEACKARLENGRKALKDEQERLKSAKSLLKQLRPELALAKQDATRR 395

Query: 576 -QGYQQALALYKR----FRLLSRQKEEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIH 629
            + YQ  L L ++    +    +  +++E+  +    +   E +     + + +V  +I 
Sbjct: 396 GEHYQNLLKLREQRDGAWYAARKAVDDVERLASLFEQQQTTEARLDRHQNEIEQVRERIA 455

Query: 630 QIESQEAMI 638
            +++Q A +
Sbjct: 456 ALQNQNATV 464


>gi|169830179|ref|YP_001700337.1| replicative DNA helicase [Lysinibacillus sphaericus C3-41]
 gi|168994667|gb|ACA42207.1| Replicative DNA helicase [Lysinibacillus sphaericus C3-41]
          Length = 453

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 12/184 (6%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           +  +  ++       E +++  +   P  L    + L    +  N  +K++  +     +
Sbjct: 2   NEPMMDRVPPHNREAEQSVIGAIFLEPQSLITASEILLADDFYLNAHKKIFETMLRLSDQ 61

Query: 529 QKYFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
            K      + + L  +             EL   +      A       E  ++      
Sbjct: 62  GKAIDVVTVTEELSAKKEIEDVGGLSYLLELANAVPTAANVAHYAKIVEEKALLRRLIRV 121

Query: 579 QQALAL--YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +    Y R   +     E EK++ +V  +  A     +  +L E    I Q++SQ+ 
Sbjct: 122 ATKIVEDGYTREDEVEALLGEAEKKMMEVANRKNAGDFKHVKDVLVETFDNIEQLQSQKG 181

Query: 637 MIEG 640
            + G
Sbjct: 182 DVTG 185


>gi|118479701|ref|YP_896852.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           thuringiensis str. Al Hakam]
 gi|196044939|ref|ZP_03112173.1| MutS2 family protein [Bacillus cereus 03BB108]
 gi|225866525|ref|YP_002751903.1| MutS2 family protein [Bacillus cereus 03BB102]
 gi|229186805|ref|ZP_04313960.1| hypothetical protein bcere0004_43460 [Bacillus cereus BGSC 6E1]
 gi|229198701|ref|ZP_04325400.1| hypothetical protein bcere0001_42260 [Bacillus cereus m1293]
 gi|189030425|sp|A0RJF2|MUTS2_BACAH RecName: Full=MutS2 protein
 gi|254766189|sp|C1ETZ0|MUTS2_BACC3 RecName: Full=MutS2 protein
 gi|118418926|gb|ABK87345.1| DNA mismatch repair protein, MutS family [Bacillus thuringiensis
           str. Al Hakam]
 gi|196024427|gb|EDX63100.1| MutS2 family protein [Bacillus cereus 03BB108]
 gi|225787320|gb|ACO27537.1| MutS2 family protein [Bacillus cereus 03BB102]
 gi|228584777|gb|EEK42896.1| hypothetical protein bcere0001_42260 [Bacillus cereus m1293]
 gi|228596542|gb|EEK54207.1| hypothetical protein bcere0004_43460 [Bacillus cereus BGSC 6E1]
          Length = 786

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|307943674|ref|ZP_07659018.1| putative regulatory protein RepA [Roseibium sp. TrichSKD4]
 gi|307773304|gb|EFO32521.1| putative regulatory protein RepA [Roseibium sp. TrichSKD4]
          Length = 349

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 10/109 (9%)

Query: 7   FIKDLLIHIP---ISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
            I  +   I    IS+++   +        +  G +        EK  S     +KG++ 
Sbjct: 5   IISQVKEAIRDRGISDVV---LALFPDAVRSASGIHMGS--VKGEKGQSLSVERTKGYWK 59

Query: 64  CFSCHVKG-DHLSFLSALLGC-SFIESVQRLAAIAGVPLPVVDPKIEKK 110
             +   KG D ++         S  E+   LA    + +      + +K
Sbjct: 60  DHATGDKGADLIALWKQHRQLSSKTEAAIELAERLSIEIAESKADVPRK 108


>gi|157074178|ref|NP_001096803.1| coiled-coil domain-containing protein 157 [Bos taurus]
 gi|134025926|gb|AAI34592.1| LOC100125300 protein [Bos taurus]
          Length = 637

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 70/235 (29%), Gaps = 23/235 (9%)

Query: 428 IRDRLQQLFQKYITEHSGYG-RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
              +L  L +  + E  G   R   +           Q   Q    + +  +    RE  
Sbjct: 234 CLGKLVGLLRAQLEEAEGQKDRLRMQVGELEQALQEEQAARQRQAQEAEQHRAQWERERQ 293

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
               L     +  +      +++      Q + S       E ++ L  E   +  E+  
Sbjct: 294 --QLLAETSDLKTKVATLEGELKQQRESTQAVESKAQQLQAEAEHRLEAERQVQHLEQQV 351

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
             L  +LD   +     S   +     V    +   +L  + R L +Q + ++++  ++ 
Sbjct: 352 ELLAGRLDGASQQIRWASTELDKEKARVDSMVRHQESLQAKQRALLQQLDSLDQEREELR 411

Query: 607 AKGEAEKTAILISI--------------------LHEVHIQIHQIESQEAMIEGF 641
              +  +                           + E+  ++ ++  +E ++  F
Sbjct: 412 GSLDEAEAQRAHVEEQLQSVQGEREQATTDLRLTISELERELVELRERERLLVAF 466


>gi|126651971|ref|ZP_01724163.1| replicative DNA helicase [Bacillus sp. B14905]
 gi|126591240|gb|EAZ85349.1| replicative DNA helicase [Bacillus sp. B14905]
          Length = 453

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 12/184 (6%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           +  +  ++       E +++  +   P  L    + L    +  N  +K++  +     +
Sbjct: 2   NEPMMDRVPPHNREAEQSVIGAIFLEPQSLITASEILLADDFYLNAHKKIFETMLRLSDQ 61

Query: 529 QKYFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
            K      + + L  +             EL   +      A       E  ++      
Sbjct: 62  GKAIDVVTVTEELSAKKEIEDVGGLSYLLELANAVPTAANVAHYAKIVEEKALLRRLIRV 121

Query: 579 QQALAL--YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +    Y R   +     E EK++ +V  +  A     +  +L E    I Q++SQ+ 
Sbjct: 122 ATKIVEDGYTREDEVEALLGEAEKKMMEVANRKNAGDFKHVKDVLVETFDNIEQLQSQKG 181

Query: 637 MIEG 640
            + G
Sbjct: 182 DVTG 185


>gi|71656793|ref|XP_816938.1| kinesin [Trypanosoma cruzi strain CL Brener]
 gi|70882099|gb|EAN95087.1| kinesin, putative [Trypanosoma cruzi]
          Length = 1170

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/291 (7%), Positives = 98/291 (33%), Gaps = 17/291 (5%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R     A       +   + +   +   ++      ++ +           +    L   
Sbjct: 698 RNKRPDASNSTEQVAELNIRVQNLKREVDKMRKYDAKKEQYMQRYSFFYVDMASDILHRI 757

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             Q   + ++Q+   +I+++   G   ++  +   ++    R      ++       +  
Sbjct: 758 MLQKEEEFVRQVAHLFISQNGEVGDGIRRLNKAHREEMEQMRKRHVEEMEELHKLSSARL 817

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           + ++  +   +  ++ +   +L  +     + ++ +        E+         ++L  
Sbjct: 818 KESIEKSNELYQQLIDKHVDKLNYVEERMTKNKEFYEAELKRLGEENEKTRVRYEEQLDR 877

Query: 544 R--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                 +  ++L  Q+         +   +  +++  +    + +R   + R +++ E++
Sbjct: 878 ARTQHQKETRKLREQLSSGASDRQRSGEAVKRLQE--EHEKEMNRRQEEMDRYRQDKEQE 935

Query: 602 IAQVTAKGEAEKTA-------------ILISILHEVHIQIHQIESQEAMIE 639
           I+++  + + EK                L   ++E+  ++ + +++   +E
Sbjct: 936 ISRLKKQVDNEKLRHESDMLEKERQRRSLEREVNELRRELLKAQTERNRME 986


>gi|330997711|ref|ZP_08321556.1| ATP-dependent chaperone protein ClpB [Paraprevotella xylaniphila
           YIT 11841]
 gi|329570239|gb|EGG51979.1| ATP-dependent chaperone protein ClpB [Paraprevotella xylaniphila
           YIT 11841]
          Length = 866

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 74/273 (27%), Gaps = 41/273 (15%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + L  +DM              +    +   +      I        
Sbjct: 220 RILRGDVPENLKDKQLYSLDMGALIAGAKYKGEFEERLKSVINEVTKSEGRI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      ++N P  L                   +   L   +             R+ +
Sbjct: 328 ERRFQTVMVNEPDTLSTI---------------SILRGLKERYENHHKV-------RIQD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + D        +  I  + +    A  L      +  + +EIE+++ 
Sbjct: 366 DAIIAAVELSNRYITDR----FLPDKAIDLMDEA---AAKLRMERDSVPEELDEIERRLK 418

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           Q+  + EA K       L ++  +I +++ QE+
Sbjct: 419 QLEIEREAIKRENDQPKLEQLSKEIAELKEQES 451



 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 79/217 (36%), Gaps = 20/217 (9%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++    +      +  +++    + +   K  +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQTVMVNEPDTLSTISILRGLKERYENHHKVRIQDDAIIAAVELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL         +      +EI +RL +       + + R
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRME-----RDSVPEELDEIERRLKQLEIER--EAIKR 429

Query: 556 QVRDAGLWSATTEANIVDVRQG-----YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           +     L   + E   +  ++      ++    L  + +   +Q E+++ +  +   +G+
Sbjct: 430 ENDQPKLEQLSKEIAELKEQESSYKAKWEAERGLVNKIQQNKQQIEQLKFEAERAEREGD 489

Query: 611 AEKTAI--------LISILHEVHIQIHQIESQEAMIE 639
             K A         L   ++ +  Q+   +  +AMI+
Sbjct: 490 YGKVAEIRYGKLKALEDEINRIQDQLKDTQGGDAMIK 526


>gi|258512699|ref|YP_003186133.1| ATPase AAA-2 domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479425|gb|ACV59744.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 812

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 69/215 (32%), Gaps = 12/215 (5%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWK----KNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           Y     DRL+++  +     +      +      A   +    +  +++ +L +G+L   
Sbjct: 252 YRGEFEDRLKKIMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASNILKPALARGELQCI 311

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +         +   PA+ + ++Q +        E  ++   L   +             
Sbjct: 312 GATTLDEYRKHIEKDPAL-ERRFQPIMVDEPSPEEALEILKGLRDRYEAHHRV------- 363

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           ++ +      +K  DR + D  L     +       +   +        + L ++ E++ 
Sbjct: 364 KITDEALEAAVKLSDRYISDRFLPDKAIDLIDEAASRVRLRTHTAPPNLKELEQKLEKVR 423

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +        E E  A L     ++  ++ +++  
Sbjct: 424 SEKDAAVQSQEFELAASLRDEEQKIKEELERLKET 458


>gi|210612358|ref|ZP_03289283.1| hypothetical protein CLONEX_01484 [Clostridium nexile DSM 1787]
 gi|210151618|gb|EEA82625.1| hypothetical protein CLONEX_01484 [Clostridium nexile DSM 1787]
          Length = 635

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 52/505 (10%), Positives = 123/505 (24%), Gaps = 46/505 (9%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
            ++ ++ +     ++L   YV    R         +Y         +  S   N  K  +
Sbjct: 2   EEYTREQIQRADDTDL---YVFLSGRGEQFKRCGKEYRWL------RHDSVMIN--KNEW 50

Query: 63  YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL----- 117
           Y FS +  G  + F+    G SF E+V+ L    G  +   + +  K++  +  +     
Sbjct: 51  YRFSQNKGGHAIDFMKEFYGLSFAEAVKELLGEEG--VGDTNRRTAKEDAGRQKVCPIPL 108

Query: 118 --------IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169
                       E+A  +     K +              +S A            +   
Sbjct: 109 PGLELPERNESCEIARKYLIEQRKLSEYLVDQMIEKGDIYESKAYHNVVFVGRDKEQNPR 168

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
              +R    +  +    G            D        PI              + +  
Sbjct: 169 YAAMRGTDENRYRGEARGSEKAYGFGHIGTDEKPFVFESPIDLLS------YITAVPEEW 222

Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS--SSFIILVEGYMDVLSLC 287
                 S   +     K +Y  +  ++ +   +  D   N     F+ ++     V  L 
Sbjct: 223 EKHSYISLGGLSEKAMKRMYTEYPHIHSIYLCLDNDESGNERCRQFVSMIPEEFCVFRLE 282

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
            A        +     +   + +     R  L        +                   
Sbjct: 283 SAKKDWNECLVEGLPVKEMAKQICLRDNRENLIPVTKMSEVEETVVQWLWYPFIPFGKVT 342

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
           +      +G+        +   A          L + L     E  +         +   
Sbjct: 343 LIQGNPGKGK-------TWLAMAIAAYCTNGKELPNALP---IEPFNVLYQTAEDGIADT 392

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
           +K  +        R  +      +L     +                  +   G +  + 
Sbjct: 393 IKPRLAKCGADMTRVRFINEDEKQLSMTDDRIEKAIRQNNVRLMIMDPIQAYLGANVDMN 452

Query: 468 QSSLVKGKLSKKPSLREAALLLTLI 492
           +++ ++       ++ E      ++
Sbjct: 453 RANEIRPLFRHLSTIAERTGCAIVL 477


>gi|146329872|ref|YP_001209152.1| ATP-dependent protease La [Dichelobacter nodosus VCS1703A]
 gi|302425050|sp|A5EWF3|LON_DICNV RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|146233342|gb|ABQ14320.1| ATP-dependent protease La [Dichelobacter nodosus VCS1703A]
          Length = 805

 Score = 46.0 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 51/154 (33%), Gaps = 7/154 (4%)

Query: 491 LINHPA--ILQEQYQELADIRYDNNELQKLWSFLFSDFVE---QKYFLPEEIHQRLCERG 545
            +N        ++   L      + E   +   L  +F +    +    +E+ + L    
Sbjct: 97  ALNDDEKMFSAKKRNMLEKNSTKSEEHDSIVEILIEEFAKYLRNQERSADELLETLRGIN 156

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
               +        D  +        + D  +  Q+ + L  +    +   ++I+ ++ Q 
Sbjct: 157 DIGRISDTIAAHMDFRIEERVHLLAMEDAYERSQRLMILLAQESEKNELNKKIKNRVKQQ 216

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             + + E    L   +  +  ++ +++  +  IE
Sbjct: 217 MERNQREYY--LNEKIKAIQKELGEMDEAQNDIE 248


>gi|324328443|gb|ADY23703.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 786

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIEQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|291544939|emb|CBL18048.1| Mismatch repair ATPase (MutS family) [Ruminococcus sp. 18P13]
          Length = 2271

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 23/100 (23%)

Query: 1  MNYPRDFIKDLLIHIPISNL----IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN 56
          M        +      + NL    +    D  +     V  +       HD    S H  
Sbjct: 1  MRIT----DEQKERANLVNLPQFLMSHGFDLKKVGKEYVWKE-------HD----SLHIK 45

Query: 57 D----SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          D      G ++ FS +  GD++  L   +  SFI++V+ L
Sbjct: 46 DNGPGECGQWFRFSENKGGDNIGLLREYMDMSFIDAVEAL 85


>gi|229093646|ref|ZP_04224746.1| hypothetical protein bcere0021_43700 [Bacillus cereus Rock3-42]
 gi|228689733|gb|EEL43540.1| hypothetical protein bcere0021_43700 [Bacillus cereus Rock3-42]
          Length = 786

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIEQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|146418150|ref|XP_001485041.1| hypothetical protein PGUG_02770 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 891

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 86/297 (28%), Gaps = 19/297 (6%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +R   +     L      +     +R   +R        A +    +   N +K  
Sbjct: 524 PAELVRSQLQKFAYTLSKTVDTIDPENARRLEASREAAVKRAVAGISEEQEEIANRVKVM 583

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R       + +  +   +   E     +  ++     +Q+  S   ++      +  +
Sbjct: 584 DERKRVIDVAKRKQDEEAARLKLERLSAEQKAEQERMLAEQERRSLEKLEREKHLIRERE 643

Query: 479 KPSLREAA----LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K  + E      ++   +++   L      +  I   N + + L   L +   +  +   
Sbjct: 644 KRKIAEEINAKGIIKIDLDNLENLDTDKLRIMQIEQLNKDKKNLEEKLRALSKKTDHTER 703

Query: 535 E---EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY------ 585
                  Q L +    ++ ++            A  + +  +     ++   L       
Sbjct: 704 AFRRYELQYLEKDAEAQIEQEAKNYELVKANKIAKAKKDFEEAHALKERFTRLVPDYSEF 763

Query: 586 ------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 K    L + + E + Q+ +   +   +     I  L +   +  Q E +EA
Sbjct: 764 KSEINAKNKDKLKQLQAEAKAQLERAKQERIEQIKRERIEELAQRKREQIQAEQEEA 820


>gi|126332018|ref|XP_001365741.1| PREDICTED: similar to dynactin 1 p150 [Monodelphis domestica]
          Length = 1285

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 93/301 (30%), Gaps = 15/301 (4%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +             L  E         ++E E       +   +LEI          D  
Sbjct: 299 EEMADTADAIEMATLDKEMAEERAESLQQEVEALKERLEELTTDLEILKAEIEEKGSDGA 358

Query: 420 LRYYYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              Y  + + ++  +L    +           +     +  +  +  L      + +L +
Sbjct: 359 ASSYQLKQLEEQNARLKDALVRMRDLSASEKQEHIKLQKLMEKKNVELEAVRQQRERLQE 418

Query: 479 KPSLREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPE 535
           +    E  +        A L  +E  + L D   +  E +++L   +       +     
Sbjct: 419 ELGQAERTIDELKEQVDAALGAEEMVETLTDRNLNLEEKVRELRETVGDLEAMNEMNDEL 478

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           + + R  E    E L     +VR+A       +  + D +Q  ++   L    + ++R+ 
Sbjct: 479 QENARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNREL 538

Query: 596 EEIEKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKM 644
              ++   +   +   E      K A   +    + +++ Q+E  +A     ++  F   
Sbjct: 539 TNQQEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHVSLLTAFMPD 598

Query: 645 S 645
           S
Sbjct: 599 S 599



 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 68/222 (30%), Gaps = 11/222 (4%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 228 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRKLKEARKEA 287

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + +E+     E + 
Sbjct: 288 KDALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERLEELTTDLEILK 347

Query: 539 QRLCERGFGELLKQLD-RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             + E+G          +Q+ +           + D+    +Q     ++      +K+ 
Sbjct: 348 AEIEEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSASEKQEHIKLQKLM----EKKN 403

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +E +  +   +   E+       + E+  Q+      E M+E
Sbjct: 404 VELEAVRQQRERLQEELGQAERTIDELKEQVDAALGAEEMVE 445


>gi|15896946|ref|NP_350295.1| replicative DNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15026821|gb|AAK81635.1|AE007867_2 Replicative DNA helicase, DNAC [Clostridium acetobutylicum ATCC
           824]
 gi|325511123|gb|ADZ22759.1| replicative DNA helicase [Clostridium acetobutylicum EA 2018]
          Length = 442

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/184 (9%), Positives = 59/184 (32%), Gaps = 18/184 (9%)

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
              +   +    E ++L ++I+    + +  + L    +     Q +++ +   F +   
Sbjct: 3   APLRAMPQNLEAEQSVLGSMISDKNCIAQAAESLRGEDFYRQNHQIIFNAMLELFQKDIP 62

Query: 532 FLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVD-VRQGYQQ 580
                + + L                ++   +              +  ++  + +    
Sbjct: 63  VDLITLLEHLKSTDKLEASGGITYVTQIRDSIASTANIQSYIKIVKDKAVLRKLIKSSTD 122

Query: 581 AL-ALYKRFRLLSRQKEEIEKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +   Y +   + +  +  EK+   IA+     + E   +++    E   QI ++ + + 
Sbjct: 123 IIEESYSKQDDVEKVLDSAEKRIFDIAENKVTSDFEAMNVVLERGFE---QIEKLYNNKG 179

Query: 637 MIEG 640
            I G
Sbjct: 180 EITG 183


>gi|330887900|gb|EGH20561.1| hypothetical protein PSYMO_03293 [Pseudomonas syringae pv. mori
          str. 301020]
          Length = 738

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 17/62 (27%)

Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGFYYCF- 65
           +L  +                 N     + A CP H +K+PS   +   D +   +CF 
Sbjct: 17 RILQRLD---------GVKPSGKNR----HMAKCPAHLDKSPSLSVSSTDDGRALIHCFA 63

Query: 66 SC 67
           C
Sbjct: 64 GC 65


>gi|320330305|gb|EFW86288.1| hypothetical protein PsgRace4_09075 [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330882250|gb|EGH16399.1| hypothetical protein Pgy4_25435 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 735

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 17/62 (27%)

Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGFYYCF- 65
           +L  +                 N     + A CP H +K+PS   +   D +   +CF 
Sbjct: 17 RILQRLD---------GVKPSGKNR----HMAKCPAHLDKSPSLSVSSTDDGRALIHCFA 63

Query: 66 SC 67
           C
Sbjct: 64 GC 65


>gi|320325853|gb|EFW81913.1| hypothetical protein PsgB076_04511 [Pseudomonas syringae pv.
          glycinea str. B076]
          Length = 738

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 17/62 (27%)

Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGFYYCF- 65
           +L  +                 N     + A CP H +K+PS   +   D +   +CF 
Sbjct: 17 RILQRLD---------GVKPSGKNR----HMAKCPAHLDKSPSLSVSSTDDGRALIHCFA 63

Query: 66 SC 67
           C
Sbjct: 64 GC 65


>gi|306833656|ref|ZP_07466783.1| CHC2 family Zn-finger protein [Streptococcus bovis ATCC 700338]
 gi|304424426|gb|EFM27565.1| CHC2 family Zn-finger protein [Streptococcus bovis ATCC 700338]
          Length = 336

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          P HD    SF        +  FS  V+GD + F+  + G +F E+V  L
Sbjct: 34 PDHD----SFRIFADTNTFKWFSRDVQGDVIDFVQLVAGVTFKEAVSYL 78


>gi|251792440|ref|YP_003007166.1| replicative DNA helicase [Aggregatibacter aphrophilus NJ8700]
 gi|247533833|gb|ACS97079.1| replicative DNA helicase [Aggregatibacter aphrophilus NJ8700]
          Length = 466

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 51/160 (31%), Gaps = 10/160 (6%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
                          +       E A+L +++ +     +  + +    +   E + ++ 
Sbjct: 2   ASKNSPPTKEQTSLNIPPHSIEAEQAVLGSILLNDKCWDDVAENVVKEDFYRFEHRLIFE 61

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +     +Q       + Q L      E+++Q+      A L + T  A           
Sbjct: 62  EMEKLMTQQAPVDLITLEQALKN---REVIEQVGGFAYLAELSNNTPSAAN-------VG 111

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
           A A   R + + R+   +  +IAQ +   + +    L+  
Sbjct: 112 AYANVVREKAIMRELISVGNKIAQNSYSPKGQDVKQLLDE 151


>gi|16763169|ref|NP_458786.1| hypothetical protein STY4707 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144648|ref|NP_807990.1| hypothetical protein t4399 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213608042|ref|ZP_03368868.1| hypothetical protein SentesTyp_00272 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213850082|ref|ZP_03380980.1| hypothetical protein SentesT_00170 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25512861|pir||AF1047 probable membrane protein yjeP [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505477|emb|CAD06827.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140287|gb|AAO71850.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 1108

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F     +     +  ++    +  +  +   +Q++L   +  K    R       + N P
Sbjct: 18  FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77

Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +   L+ Q   L D           + L   +     +      E   ++   R   + 
Sbjct: 78  KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137

Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598
           L QL +Q  DA       E         A +   +    QA +   +  +   +  ++  
Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197

Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +++A++ ++   +++  L + L  +  Q++ +  +EA
Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237


>gi|332361296|gb|EGJ39100.1| CHC2 family Zn-finger domain protein [Streptococcus sanguinis
          SK1056]
          Length = 362

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 22/91 (24%)

Query: 8  IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
          I+ +     I  +              +   +          P HD    SF        
Sbjct: 4  IEKVKQKA-ILEVAES-----------LGYSFKRLSGQVYEHPEHD----SFRIFADTNT 47

Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          +  FS  V+GD + F+  + G SF +++  L
Sbjct: 48 FKWFSRDVQGDVIDFVQLMTGVSFKKALSYL 78


>gi|325291427|ref|YP_004267608.1| primary replicative DNA helicase [Syntrophobotulus glycolicus DSM
           8271]
 gi|324966828|gb|ADY57607.1| primary replicative DNA helicase [Syntrophobotulus glycolicus DSM
           8271]
          Length = 441

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 56/169 (33%), Gaps = 15/169 (8%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
             K+       E A+L +L+  P      ++ L    +  +  + +++ +     + +  
Sbjct: 3   PTKVPPHNLEAEQAVLGSLMLDPEQASVAFEILRFEDFYRDSHKIIFTAIQEILDKGEPV 62

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               + + L + G      +L+       +    +        + Y + +A     R L 
Sbjct: 63  DLVTVAEYLRQYG------RLESIGGIGTISQVASSVPSAANIEYYARIVAEKALLRQLI 116

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           +    +E++          E       +L E    I +I  ++   +GF
Sbjct: 117 KMAGYLEQK--------GYEPGEEAFDLLEEAEKMILEISHRQ-TKDGF 156


>gi|322615512|gb|EFY12432.1| hypothetical protein SEEM315_10109 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618572|gb|EFY15461.1| hypothetical protein SEEM971_10368 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622015|gb|EFY18865.1| hypothetical protein SEEM973_17912 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627087|gb|EFY23879.1| hypothetical protein SEEM974_00297 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631046|gb|EFY27810.1| hypothetical protein SEEM201_05123 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637735|gb|EFY34436.1| hypothetical protein SEEM202_03794 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642399|gb|EFY39003.1| hypothetical protein SEEM954_03967 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645660|gb|EFY42185.1| hypothetical protein SEEM054_18755 [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650500|gb|EFY46908.1| hypothetical protein SEEM675_15239 [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653452|gb|EFY49782.1| hypothetical protein SEEM965_03779 [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659721|gb|EFY55964.1| hypothetical protein SEEM19N_08284 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662068|gb|EFY58284.1| hypothetical protein SEEM801_16186 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666183|gb|EFY62361.1| hypothetical protein SEEM507_03119 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672603|gb|EFY68714.1| hypothetical protein SEEM877_15474 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676033|gb|EFY72104.1| hypothetical protein SEEM867_14688 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680517|gb|EFY76555.1| hypothetical protein SEEM180_12453 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684589|gb|EFY80593.1| hypothetical protein SEEM600_17667 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192904|gb|EFZ78130.1| hypothetical protein SEEM581_21193 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197220|gb|EFZ82360.1| hypothetical protein SEEM501_11161 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201663|gb|EFZ86727.1| hypothetical protein SEEM460_21646 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206177|gb|EFZ91139.1| hypothetical protein SEEM020_11080 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213186|gb|EFZ97988.1| hypothetical protein SEEM6152_12603 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215559|gb|EGA00303.1| hypothetical protein SEEM0077_07803 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219544|gb|EGA04029.1| hypothetical protein SEEM0047_20958 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227847|gb|EGA12001.1| hypothetical protein SEEM0055_19426 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229017|gb|EGA13146.1| hypothetical protein SEEM0052_05185 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236371|gb|EGA20447.1| hypothetical protein SEEM3312_18801 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237509|gb|EGA21570.1| hypothetical protein SEEM5258_19652 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241825|gb|EGA25854.1| hypothetical protein SEEM1156_12702 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248026|gb|EGA31963.1| putative mechanosensitive channel protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254643|gb|EGA38454.1| putative mechanosensitive channel protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258298|gb|EGA41975.1| putative mechanosensitive channel protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323259575|gb|EGA43209.1| hypothetical protein SEEM8284_10167 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265848|gb|EGA49344.1| putative mechanosensitive channel protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270292|gb|EGA53740.1| putative mechanosensitive channel protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 1108

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F     +     +  ++    +  +  +   +Q++L   +  K    R       + N P
Sbjct: 18  FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77

Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +   L+ Q   L D           + L   +     +      E   ++   R   + 
Sbjct: 78  KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137

Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598
           L QL +Q  DA       E         A +   +    QA +   +  +   +  ++  
Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197

Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +++A++ ++   +++  L + L  +  Q++ +  +EA
Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237


>gi|301160839|emb|CBW20370.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|320088777|emb|CBY98535.1| Potassium efflux system kefA Protein aefA; Flags: Precursor
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 1100

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F     +     +  ++    +  +  +   +Q++L   +  K    R       + N P
Sbjct: 10  FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 69

Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +   L+ Q   L D           + L   +     +      E   ++   R   + 
Sbjct: 70  KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 129

Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598
           L QL +Q  DA       E         A +   +    QA +   +  +   +  ++  
Sbjct: 130 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 189

Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +++A++ ++   +++  L + L  +  Q++ +  +EA
Sbjct: 190 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 229


>gi|270489019|ref|ZP_06206093.1| replicative DNA helicase [Yersinia pestis KIM D27]
 gi|270337523|gb|EFA48300.1| replicative DNA helicase [Yersinia pestis KIM D27]
          Length = 459

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/135 (11%), Positives = 42/135 (31%), Gaps = 3/135 (2%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                  +   KL       E ++L  L+          + +A   + +   +++++ + 
Sbjct: 2   TEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASKDFFSRPHRRIFTEMQ 61

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                 K      + + L ++G    L  +      A L   T  A  +       +  A
Sbjct: 62  RLLENSKPIDLITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAYADIVRERA 118

Query: 584 LYKRFRLLSRQKEEI 598
           + +    ++ +  + 
Sbjct: 119 VVREMISVANEIADA 133


>gi|261249442|emb|CBG27306.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 1108

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F     +     +  ++    +  +  +   +Q++L   +  K    R       + N P
Sbjct: 18  FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77

Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +   L+ Q   L D           + L   +     +      E   ++   R   + 
Sbjct: 78  KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137

Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598
           L QL +Q  DA       E         A +   +    QA +   +  +   +  ++  
Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197

Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +++A++ ++   +++  L + L  +  Q++ +  +EA
Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237


>gi|218290044|ref|ZP_03494211.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239878|gb|EED07066.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 812

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 69/215 (32%), Gaps = 12/215 (5%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWK----KNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           Y     DRL+++  +     +      +      A   +    +  +++ +L +G+L   
Sbjct: 252 YRGEFEDRLKKIMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASNILKPALARGELQCI 311

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +         +   PA+ + ++Q +        E  ++   L   +             
Sbjct: 312 GATTLDEYRKHIEKDPAL-ERRFQPIMVDEPSPEEALEILKGLRDRYEAHHRV------- 363

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           ++ +      +K  DR + D  L     +       +   +        + L ++ E++ 
Sbjct: 364 KITDEALEAAVKLSDRYISDRFLPDKAIDLIDEAASRVRLRTHTAPPNLKELEQKLEKVR 423

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +        E E  A L     ++  ++ +++  
Sbjct: 424 SEKDAAVQSQEFELAASLRDEEQKIKEELERLKET 458


>gi|158299190|ref|XP_319309.3| AGAP010147-PA [Anopheles gambiae str. PEST]
 gi|157014247|gb|EAA43613.3| AGAP010147-PA [Anopheles gambiae str. PEST]
          Length = 1959

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/260 (11%), Positives = 83/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1571 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1630

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1631 NKANAEAQKNIKRYQQQLKDVQSALEEEQRARDDAREQLGISER-------RANALQNEL 1683

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE----EIHQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1684 EESRTLLEQADRGRRQAEQELSDAHEQLNEVSAQNASIAAAKRKLESELQTLHSDLDELL 1743

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  ++  L
Sbjct: 1744 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAESNAL 1803

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++ES+
Sbjct: 1804 KGGKKAIQKLEQRVRELESE 1823



 Score = 44.1 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 94/329 (28%), Gaps = 23/329 (6%)

Query: 329  RAAYKAIDLVLCHLIPGNRVNFVLLSRGED-PDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
                + ID  +               R  D   + +    K   E L ++     D+   
Sbjct: 1564 SQVRQEIDRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINEL 1623

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA-------IRDRLQQLFQKYI 440
                + +     E  +     +  +  ++        ++        I +R     Q  +
Sbjct: 1624 EIALDHANKANAEAQKNIKRYQQQLKDVQSALEEEQRARDDAREQLGISERRANALQNEL 1683

Query: 441  TEHSGYGRYWKKNARHRDQK--GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
             E         +  R  +Q+     ++L + S     ++      E+ L     +   +L
Sbjct: 1684 EESRTLLEQADRGRRQAEQELSDAHEQLNEVSAQNASIAAAKRKLESELQTLHSDLDELL 1743

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
             E        +    +  +L   L     +      E++ + L ++   EL  +LD    
Sbjct: 1744 NEAKNSEEKAKKAMVDAARLADEL--RAEQDHAQTQEKLRKALEQQ-IKELQVRLDEAES 1800

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFRLL--------SRQKEEI--EKQIAQVTAK 608
            +A          +    +  +  L   +R             R+ +E+  + +  +   +
Sbjct: 1801 NALKGGKKAIQKLEQRVRELESELDSEQRRHADAQKNLRKSERRIKELTFQSEEDRKNHE 1860

Query: 609  GEAEKTAILISILHEVHIQIHQIESQEAM 637
               +    L   +     QI + E   A+
Sbjct: 1861 RMQDLVDKLQQKIKTYKRQIEEAEEIAAL 1889


>gi|296192315|ref|XP_002744007.1| PREDICTED: homeobox protein cut-like 1 [Callithrix jacchus]
          Length = 1531

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 101/286 (35%), Gaps = 22/286 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 101 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q    +        ++  ++   +   +          KL +     ++  L T +   
Sbjct: 161 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS--LQTALEKT 218

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +     +E++ + + L   +   E      E + ++L        L 
Sbjct: 219 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 278

Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598
              ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++
Sbjct: 279 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQAGLTKLRENSASQISQL 338

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           E+Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 339 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 384


>gi|254784763|ref|YP_003072191.1| replicative DNA helicase [Teredinibacter turnerae T7901]
 gi|237686426|gb|ACR13690.1| replicative DNA helicase [Teredinibacter turnerae T7901]
          Length = 442

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 52/150 (34%), Gaps = 14/150 (9%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E ++L  L+   +      +++A+  +  +  +K+++ +F      +      + + L 
Sbjct: 7   AEQSVLGGLMQDASNFDGVSEQIAEGDFYKSGHRKIYAAMFQLIERDQPIDVITVSEYLT 66

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +    E +  LD  V  A    ++              A A   R R   RQ      +I
Sbjct: 67  QTDELEAVGGLDYLVDLATNVPSSANVA----------AYARIVRERATFRQLISAATEI 116

Query: 603 AQVT----AKGEAEKTAILISILHEVHIQI 628
           ++ +      G  +   +    + E+  + 
Sbjct: 117 SRASFNPAGLGSDDLLQLAEKRVLEIAEER 146


>gi|220935429|ref|YP_002514328.1| OmpA/MotB domain-containing protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996739|gb|ACL73341.1| OmpA/MotB domain-containing protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 427

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 69/217 (31%), Gaps = 12/217 (5%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              + + L     +             +      ++   Q+ +  S  + +   +     
Sbjct: 61  VTELAETLSMREAEAEDLRERVQALSGRLQVTLAEREQLQQSVDQSQAELRQQAETLEAH 120

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--EIHQRLC 542
              + +L      L+   ++L        ++ +L S L                +  RL 
Sbjct: 121 LLQIASLQEDIDALRRLREDLES------QVGRLASELEESQASAGQLRDRSRALEARLA 174

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL--ALYKRFRLLSRQKEEIEK 600
           E     LL Q + + R+  +          D     +++L      R   L RQ +++E+
Sbjct: 175 ETQETTLLAQREIEAREIRIQDLAAGIEERDRALVEERSLTADAQARVDALRRQMQDLEQ 234

Query: 601 QIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQE 635
           Q+A++        E        + ++  +++   ++E
Sbjct: 235 QLARLNETLRAREETIEAQQVEIADLGERLNLALAEE 271



 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 55/137 (40%), Gaps = 7/137 (5%)

Query: 505 LADIRYD-NNELQKLWSFL--FSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRD 559
           L+D+ ++ +  L+ L + +   ++ +  +    E++ +R+          L + ++  + 
Sbjct: 43  LSDVLFERHRALETLQTRVTELAETLSMREAEAEDLRERVQALSGRLQVTLAEREQLQQS 102

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA--IL 617
                A        +     Q  +L +    L R +E++E Q+ ++ ++ E  + +   L
Sbjct: 103 VDQSQAELRQQAETLEAHLLQIASLQEDIDALRRLREDLESQVGRLASELEESQASAGQL 162

Query: 618 ISILHEVHIQIHQIESQ 634
                 +  ++ + +  
Sbjct: 163 RDRSRALEARLAETQET 179


>gi|197294337|ref|YP_001798878.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma
           australiense]
 gi|171853664|emb|CAM11545.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma
           australiense]
          Length = 427

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 53/160 (33%), Gaps = 27/160 (16%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E ALL TL+ +P  +      +    + N + + ++  +    ++ +      +   L 
Sbjct: 4   AERALLGTLLLNPEKMDAVINLVNTNNFSNPKHRCIFETMKRLKLQNREIDYVTVGSVLD 63

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
              +   +  +D  +    +      A   +  + Y   +      R L    +++  ++
Sbjct: 64  NNLYK--IGGIDYLIELVEM------APASEYLETYIDLIKENALKRDLLGLIKQLPTEL 115

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           +         K+  + + L  V  Q          +EGF 
Sbjct: 116 S---------KSKNIHNYLQTVKNQ----------VEGFM 136


>gi|16767596|ref|NP_463211.1| hypothetical protein STM4347 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161617620|ref|YP_001591585.1| hypothetical protein SPAB_05480 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167994769|ref|ZP_02575860.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168237078|ref|ZP_02662136.1| transporter, small conductance mechanosensitive ion channel (MscS)
           family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244872|ref|ZP_02669804.1| transporter, small conductance mechanosensitive ion channel (MscS)
           family [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168822522|ref|ZP_02834522.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194444691|ref|YP_002043605.1| hypothetical protein SNSL254_A4708 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194450171|ref|YP_002048393.1| hypothetical protein SeHA_C4765 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194734787|ref|YP_002117291.1| hypothetical protein SeSA_A4616 [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197248122|ref|YP_002149264.1| hypothetical protein SeAg_B4625 [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198242659|ref|YP_002218234.1| hypothetical protein SeD_A4744 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200387394|ref|ZP_03214006.1| transporter, small conductance mechanosensitive ion channel (MscS)
           family [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204926659|ref|ZP_03217861.1| transporter, small conductance mechanosensitive ion channel (MscS)
           family [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205355109|ref|YP_002228910.1| hypothetical protein SG4190 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207859496|ref|YP_002246147.1| hypothetical protein SEN4117 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213052291|ref|ZP_03345169.1| hypothetical protein Salmoneentericaenterica_04772 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213428683|ref|ZP_03361433.1| hypothetical protein SentesTyphi_26036 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|16422910|gb|AAL23170.1| putative periplasmic binding protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161366984|gb|ABX70752.1| hypothetical protein SPAB_05480 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403354|gb|ACF63576.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194408475|gb|ACF68694.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194710289|gb|ACF89510.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197211825|gb|ACH49222.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197290053|gb|EDY29412.1| transporter, small conductance mechanosensitive ion channel (MscS)
           family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197937175|gb|ACH74508.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199604492|gb|EDZ03037.1| transporter, small conductance mechanosensitive ion channel (MscS)
           family [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204323324|gb|EDZ08519.1| transporter, small conductance mechanosensitive ion channel (MscS)
           family [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205274890|emb|CAR39956.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205327415|gb|EDZ14179.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205336335|gb|EDZ23099.1| transporter, small conductance mechanosensitive ion channel (MscS)
           family [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205341102|gb|EDZ27866.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|206711299|emb|CAR35677.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|267996681|gb|ACY91566.1| hypothetical protein STM14_5228 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312915448|dbj|BAJ39422.1| hypothetical protein STMDT12_C44790 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321223222|gb|EFX48292.1| Potassium efflux system KefA protein / Small-conductance
           mechanosensitive channel [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323132688|gb|ADX20118.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|326626039|gb|EGE32384.1| Mechanosensitive ion channel MscS [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326630266|gb|EGE36609.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332991161|gb|AEF10144.1| hypothetical protein STMUK_4332 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 1108

 Score = 46.0 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F     +     +  ++    +  +  +   +Q++L   +  K    R       + N P
Sbjct: 18  FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77

Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +   L+ Q   L D           + L   +     +      E   ++   R   + 
Sbjct: 78  KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137

Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598
           L QL +Q  DA       E         A +   +    QA +   +  +   +  ++  
Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197

Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +++A++ ++   +++  L + L  +  Q++ +  +EA
Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237


>gi|327270357|ref|XP_003219956.1| PREDICTED: protein diaphanous homolog 1-like [Anolis carolinensis]
          Length = 1258

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 79/234 (33%), Gaps = 23/234 (9%)

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I+ + +R    Q +++      ++ + +   +    ++++     +    R+      + 
Sbjct: 343 IRSELMRSGLQQILKELRTLDNEELLVQLQVFEESGEEDSADLRSRLEDVRIEIDDPSEV 402

Query: 475 KL----SKKPSLREAALLLTLINH-----------PAILQEQYQELADIRY----DNNEL 515
                 + K S  E   L  ++ H           P   +   + ++ I       + + 
Sbjct: 403 FQILLNTVKDSKAEQHFLS-MLQHLLLVRNDYEARPQYFKLIDECISQIVLHKNGADPDF 461

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           ++    L  + +        ++ +   E    EL K+LD ++          +    D+ 
Sbjct: 462 RRKHLDLHIEGLIDNLIDQTKVAK--SEAKAIELEKKLDSELTARHELQVEMKKKENDLE 519

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           Q  Q  L   +       Q   +EK+  + T     ++ A L+  L ++  ++ 
Sbjct: 520 QKLQDLLHEKETLESEKEQVS-LEKKSLENTTSLLNDQIASLMQELEDLKKKME 572


>gi|296122869|ref|YP_003630647.1| replicative DNA helicase [Planctomyces limnophilus DSM 3776]
 gi|296015209|gb|ADG68448.1| replicative DNA helicase [Planctomyces limnophilus DSM 3776]
          Length = 472

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 72/200 (36%), Gaps = 21/200 (10%)

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
            +   S+    +S   G +  +  + E ++L +++       E    L    + ++  Q 
Sbjct: 12  SRSEKSRVKPTASDFAGHVPPQNLIAEKSVLGSILLQSRAFDEVADFLLADHFYHHGHQL 71

Query: 518 LWSFLFSDFVEQ-KYFLPEEIHQR------LCERGFGELLKQLDRQVRDAGLWSATTEAN 570
           +++ + +   +  +   P  + +       L + G  E L ++   V  A       E  
Sbjct: 72  IYAAIKAIVEDNKQPVDPVTVAEHLDQKSQLEDVGGIEYLMEVLETVPHAANVKGYAEIV 131

Query: 571 IVD-VRQGYQQALALYKR---------FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
               +++    A     R           +LSR +++I   + +     + +   I++  
Sbjct: 132 RDRWIQRSLTDACTEVLRDCYSGSDDTSEVLSRAEQKIFGILQEQERSSQIDMNTIMMQT 191

Query: 621 LHEVHIQIHQIESQEAMIEG 640
           LH ++ +  +    E +I G
Sbjct: 192 LHRINARFDR----EGVISG 207


>gi|260778516|ref|ZP_05887408.1| ClpB protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604680|gb|EEX30975.1| ClpB protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 870

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 80/216 (37%), Gaps = 12/216 (5%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + I       ++KY  +     R ++  +        ++++++      +      + E+
Sbjct: 325 KTIAATTWAEYKKYFEKDPALTRRFQVVSIEEPNAEDAKQMLRGIAASLQKHHGAFIAES 384

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKL--WSFLFSDFVEQKYFLPEEIHQRLC- 542
           A+        A +    + L   +  +  +  L   S   +     K  + E + Q +  
Sbjct: 385 AI-------DAAVHLSIRYLPSRQLPDKAISLLDTASARIALTQGAKPEVIEALEQTIRY 437

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           ++     L++ +     A    A     I +  +      A +K+   L  + + ++++I
Sbjct: 438 QQNEKSALEKENALFGIAEDEIAELTTEIAENEKKLTDYQARWKQEVDLVDEIKTLQQEI 497

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           +   A+   +K       L+E+  Q+ +++ +E ++
Sbjct: 498 SDGQAEESVDKAKQ--DKLNELIDQLGELQGEEPLV 531


>gi|224586191|ref|YP_002639990.1| hypothetical protein SPC_4497 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224470719|gb|ACN48549.1| hypothetical protein SPC_4497 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 1108

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F     +     +  ++    +  +  +   +Q++L   +  K    R       + N P
Sbjct: 18  FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77

Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +   L+ Q   L D           + L   +     +      E   ++   R   + 
Sbjct: 78  KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137

Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598
           L QL +Q  DA       E         A +   +    QA +   +  +   +  ++  
Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197

Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +++A++ ++   +++  L + L  +  Q++ +  +EA
Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237


>gi|96975038|ref|NP_694955.2| centrosomal protein of 120 kDa isoform 1 [Homo sapiens]
 gi|205696377|sp|Q8N960|CE120_HUMAN RecName: Full=Centrosomal protein of 120 kDa; Short=Cep120;
           AltName: Full=Coiled-coil domain-containing protein 100
          Length = 986

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 645 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 702

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++     S      ++    + ++  + + +Q S+ + K   
Sbjct: 703 AEYTILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDC 762

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   +  L           Q+L D       L+K +         +     +  
Sbjct: 763 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 819

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 820 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 876

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+   +  A  E +        L ++  +++++  QE
Sbjct: 877 LEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 914


>gi|28386007|gb|AAH46493.1| Cep120 protein [Mus musculus]
          Length = 635

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 91/278 (32%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 295 PRETLEYKAALELEMWKEMQEDIFESQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 352

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L +L  +     S      ++    + ++  + + +Q S+ + +   
Sbjct: 353 AEYSILEGKLQKALTELETREQQLASAEAELQRERKELQLERERNLQELQDSVRRARDDC 412

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   L  L      LQ+Q  +  +       L+K +         +     +  
Sbjct: 413 VYQVELERLKLKQLEEDKQRLQQQLNDAGN---KYKTLEKEFQQFKDQQNNKPEIRLQSE 469

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 470 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 526

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+   +  A  E E        L ++  +++++  QE
Sbjct: 527 LEQMRLRYLAAEEKETVRTEQQELLDIRNELNRLRQQE 564


>gi|325696699|gb|EGD38587.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis SK160]
          Length = 641

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 17/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 541

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++   QV       A    +    ++  ++   L +R   L  Q E+++ QI+
Sbjct: 542 KAEQEALREEMEQVDSDKPVPAN---DYQIQKENQKEQRRLARRLEQLEAQIEDLDSQIS 598

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
           Q+       +     + L E   QI Q+ +  +EAM+E
Sbjct: 599 QLQEAM---QATNDAAELMESQQQIDQLTAAQEEAMLE 633


>gi|257069176|ref|YP_003155431.1| peptide chain release factor 2 [Brachybacterium faecium DSM 4810]
 gi|256559994|gb|ACU85841.1| bacterial peptide chain release factor 2 (bRF-2) [Brachybacterium
           faecium DSM 4810]
          Length = 371

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 +  L++Q     LW     A    V      A +  +R   L  + E++E  + 
Sbjct: 27  DALDAKIADLEKQASAQDLWDDVDNA--QKVSSALSHAQSERRRISELDSRIEDLEVMVQ 84

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIE 632
               + +A+      + L  +H  + ++E
Sbjct: 85  LAAEEDDADTLEEAENELVSIHKTLDELE 113


>gi|212530330|ref|XP_002145322.1| kinesin family protein [Penicillium marneffei ATCC 18224]
 gi|210074720|gb|EEA28807.1| kinesin family protein [Penicillium marneffei ATCC 18224]
          Length = 1741

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 82/250 (32%), Gaps = 10/250 (4%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
                       +    I  K  I  I D+  +    + ++  +  L Q+     +G  +
Sbjct: 422 HLSETLNTVQYAQRARAIQSKPRIQQITDESDKQAVIERLKAEIAFLRQQIRNSETGDRK 481

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
              +  R          L    L   +     S R A L+  L     +  E   ELA  
Sbjct: 482 SVVQPERSERSSDREMELQNHLLDMQESYTSLSQRHAKLISELSKASDLQTEDPDELAA- 540

Query: 509 RYDNNELQKL-WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
             +N+ +++L  S  F++ VEQ     E+  Q L           L      + L   + 
Sbjct: 541 AIENSSIERLKRSHSFAESVEQVVLEYEKTIQSLESS-LSNTRSSLSNTES-SLLERESK 598

Query: 568 EANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            A +  +    Q +   L +R         ++E ++      G +       ++++E+  
Sbjct: 599 CAFMETLNAQLQTRVQKLMERENSTEHYLHDLESRL-----DGHSTGEEKNSALVNELRK 653

Query: 627 QIHQIESQEA 636
           +I +    EA
Sbjct: 654 EIARARENEA 663


>gi|114601367|ref|XP_001155070.1| PREDICTED: coiled-coil domain containing 100 isoform 1 [Pan
           troglodytes]
 gi|114601369|ref|XP_001155129.1| PREDICTED: centrosomal protein of 120 kDa isoform 2 [Pan
           troglodytes]
          Length = 986

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 645 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 702

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++     S      ++    + ++  + + +Q S+ + K   
Sbjct: 703 AEYTILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDC 762

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   +  L           Q+L D       L+K +         +     +  
Sbjct: 763 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 819

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 820 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 876

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+   +  A  E +        L ++  +++++  QE
Sbjct: 877 LEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 914


>gi|5032309|ref|NP_004012.1| dystrophin Dp140b isoform [Homo sapiens]
 gi|152012440|gb|AAI50142.1| Dystrophin [Homo sapiens]
          Length = 1243

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 69  ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 124

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
            +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 125 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 184

Query: 323 ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                     D   +    + I+     +          L                 F  
Sbjct: 185 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 243

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 244 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 303

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
           +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 304 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 363

Query: 493 NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
               + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 364 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 422

Query: 550 -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 423 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 482

Query: 609 GEA 611
            + 
Sbjct: 483 TDE 485


>gi|62182796|ref|YP_219213.1| hypothetical protein SC4226 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62130429|gb|AAX68132.1| putative periplasmic binding protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322717298|gb|EFZ08869.1| Mechanosensitive ion channel MscS [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 1108

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F     +     +  ++    +  +  +   +Q++L   +  K    R       + N P
Sbjct: 18  FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77

Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +   L+ Q   L D           + L   +     +      E   ++   R   + 
Sbjct: 78  KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137

Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598
           L QL +Q  DA       E         A +   +    QA +   +  +   +  ++  
Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELKLAQLSA 197

Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +++A++ ++   +++  L + L  +  Q++ +  +EA
Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRKQLNSLRQREA 237


>gi|296478393|gb|DAA20508.1| coiled-coil domain-containing protein 157 [Bos taurus]
          Length = 623

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 70/235 (29%), Gaps = 23/235 (9%)

Query: 428 IRDRLQQLFQKYITEHSGYG-RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
              +L  L +  + E  G   R   +           Q   Q    + +  +    RE  
Sbjct: 234 CLGKLVGLLRAQLEEAEGQKDRLRMQVGELEQALQEEQAARQRQAQEAEQHRAQWERERQ 293

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
               L     +  +      +++      Q + S       E ++ L  E   +  E+  
Sbjct: 294 --QLLAETSDLKTKVATLEGELKQQRESTQAVESKAQQLQAEAEHRLEAERQVQHLEQQV 351

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
             L  +LD   +     S   +     V    +   +L  + R L +Q + ++++  ++ 
Sbjct: 352 ELLAGRLDGASQQIRWASTELDKEKARVDSMVRHQESLQAKQRALLQQLDSLDQEREELR 411

Query: 607 AKGEAEKTAILISI--------------------LHEVHIQIHQIESQEAMIEGF 641
              +  +                           + E+  ++ ++  +E ++  F
Sbjct: 412 GSLDEAEAQRAHVEEQLQSVQGEREQATTDLRLTISELERELVELRERERLLVAF 466


>gi|253576026|ref|ZP_04853359.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844601|gb|EES72616.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 226

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 36/182 (19%)

Query: 16  PISNLIGQYVDWDRRKTNAVKGDYWACCPF-HDEKTPS------FHCNDSKGFYYCFSCH 68
            I ++  Q      + ++  + +    CPF H++  P          N     + C+ C 
Sbjct: 4   DILDVADQN-GLIIKPSSQSREEVLCKCPFCHEDSKPGKKRRYYLSLNTKDQVFKCWFCG 62

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128
             G  L F+S L G                      P+ + +++ +    +++  A    
Sbjct: 63  ESGGVLRFISLLEGV---------------------PEEQVRQRYRKR--KIVHPA---- 95

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
              L   + K L  +   +  +   +      Y   S   L E   +   +E +     L
Sbjct: 96  -ERLSRNQRKLLRQHTGGKEPNWKLMRERDFAYYMRSMDLLWEQWNEFLETERQGAYLWL 154

Query: 189 LI 190
           +I
Sbjct: 155 II 156


>gi|223984563|ref|ZP_03634693.1| hypothetical protein HOLDEFILI_01988 [Holdemania filiformis DSM
           12042]
 gi|223963468|gb|EEF67850.1| hypothetical protein HOLDEFILI_01988 [Holdemania filiformis DSM
           12042]
          Length = 777

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 12/133 (9%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           +       +++K     E  +R       EL+++L+ Q+ +        EA I    Q  
Sbjct: 484 FEIARRFGLKEKIIREAEFLKRQQRSQEDELIEKLEAQILENQQLKEKQEALIAQTEQQR 543

Query: 579 QQALALYKRFRLLSRQK-----EEIEKQIAQVTAKGEA--EKTAIL-----ISILHEVHI 626
           Q      ++     ++      ++ +KQ+ +V A+GEA  E+         +  + E   
Sbjct: 544 QHLERELQKLSEEKQRILDAAEKQAQKQLEEVKAEGEALLEELRQSQKTMKLHEIIEKQH 603

Query: 627 QIHQIESQEAMIE 639
           Q++ +   EA +E
Sbjct: 604 QLNALGKSEAQLE 616


>gi|5032313|ref|NP_004014.1| dystrophin Dp140bc isoform [Homo sapiens]
          Length = 1133

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 69  ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 124

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
            +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 125 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 184

Query: 323 ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                     D   +    + I+     +          L                 F  
Sbjct: 185 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 243

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 244 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 303

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
           +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 304 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 363

Query: 493 NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
               + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 364 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 422

Query: 550 -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 423 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 482

Query: 609 GEA 611
            + 
Sbjct: 483 TDE 485


>gi|313683305|ref|YP_004061043.1| primary replicative DNA helicase [Sulfuricurvum kujiense DSM 16994]
 gi|313156165|gb|ADR34843.1| primary replicative DNA helicase [Sulfuricurvum kujiense DSM 16994]
          Length = 487

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 50/158 (31%), Gaps = 14/158 (8%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL-- 541
           E ++L ++I  P+   +    L    +  +  Q+++  + S          E + + L  
Sbjct: 11  ERSVLSSIIFDPSQFDDFDAVLTPEDFYLSAHQEIYRAMMSLAHRDLPIDEEFLRKELMA 70

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR------------FR 589
            ++    ++  +      A   +   E     +++         KR              
Sbjct: 71  KQKFDERVMVDILTANPIANTKAYVQEIKDKAIKRHLLTLTTEIKRVTLEEELTGTDVVD 130

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           L+ ++  EI +       K         ++ + E+  +
Sbjct: 131 LVEKKLYEITQSSQATDFKDAPSIADETLAYIEEMKAR 168


>gi|299469420|emb|CBH51820.1| DNA primase [Campylobacter fetus subsp. fetus]
          Length = 400

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 47 DEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS----FIESVQRL 92
          DEKT S   +   G+   F    +GD ++F   +  C     F+E+ + L
Sbjct: 30 DEKTASASIDPKNGYIKDFGSGFRGDVIAFYKEIKACDDKTAFLETKKIL 79


>gi|296230251|ref|XP_002760647.1| PREDICTED: serine/threonine-protein kinase MRCK alpha isoform 2
           [Callithrix jacchus]
          Length = 1732

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWS---ATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV ++           A   ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAARQELDDAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           ++ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|291490677|ref|NP_004011.2| dystrophin Dp140c isoform [Homo sapiens]
          Length = 1115

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 69  ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 124

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
            +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 125 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 184

Query: 323 ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                     D   +    + I+     +          L                 F  
Sbjct: 185 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 243

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 244 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 303

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
           +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 304 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 363

Query: 493 NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
               + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 364 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 422

Query: 550 -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 423 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 482

Query: 609 GEA 611
            + 
Sbjct: 483 TDE 485


>gi|261245061|ref|NP_001159698.1| centrosomal protein of 120 kDa isoform 2 [Homo sapiens]
          Length = 960

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 619 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 676

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++     S      ++    + ++  + + +Q S+ + K   
Sbjct: 677 AEYTILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDC 736

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   +  L           Q+L D       L+K +         +     +  
Sbjct: 737 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 793

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 794 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 850

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+   +  A  E +        L ++  +++++  QE
Sbjct: 851 LEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 888


>gi|296822694|ref|XP_002850327.1| fibronectin type III domain-containing protein [Arthroderma otae
           CBS 113480]
 gi|238837881|gb|EEQ27543.1| fibronectin type III domain-containing protein [Arthroderma otae
           CBS 113480]
          Length = 1065

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 71/228 (31%), Gaps = 4/228 (1%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             L   Y       +         EHSG     K++   R   G +     +        
Sbjct: 140 PPLIQAYVPKAATIVSPSAPVMSREHSGGATPAKRSGGGRRSIGSASAQEHTVPQTLDDE 199

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           +         L  L      LQ++ + L   +  ++ E ++L   L     + K  + E+
Sbjct: 200 EAAGNESEGSLKQLAERLKYLQQENEALDRQLSQEDKEYEQLLRELEDQRNDLKQRVKEK 259

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                      + + +L+   R A       E  +       ++      R+   + + +
Sbjct: 260 DDA---SGDLRKHINKLESVNRTAQSEKIKREKLLQQKEAERKKRSEDIVRWDEKAIEIK 316

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
           +    + +  A+ + E T  +     ++  +  +++  +  I+  G  
Sbjct: 317 DELTSLQEEKARIDEESTNKMEEYRRKIAEEQGEMKQIDEDIKIKGSS 364


>gi|84501333|ref|ZP_00999538.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Oceanicola
           batsensis HTCC2597]
 gi|84390624|gb|EAQ03112.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Oceanicola
           batsensis HTCC2597]
          Length = 872

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 65/204 (31%), Gaps = 4/204 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KY+ + +   R ++           +  +++    K +L     + ++AL+       
Sbjct: 319 YRKYVEKDAALARRFQPVMVEEPTVEDTISILRGIKEKYELHHGVRISDSALVAASTLSN 378

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S   E        +  ++       L      
Sbjct: 379 RYITDRFLPDKAIDLVDEAASRLRMEVDSKPEELDQLDRNILQMQIEVEALK-LEDDEAS 437

Query: 556 QVRDAGLWSATTEANIVDVR--QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           + R A    A  E           +Q         R L  Q +     +      G+  +
Sbjct: 438 KERLARQEKALAELQEKSAEMTAKWQAERDKLGEARELKEQLDRARADLEIAKRNGDLAR 497

Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636
              L   I+ ++  Q+ + E QEA
Sbjct: 498 AGELSYGIIPQLEKQLGEAEQQEA 521


>gi|296230249|ref|XP_002760646.1| PREDICTED: serine/threonine-protein kinase MRCK alpha isoform 1
           [Callithrix jacchus]
          Length = 1754

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWS---ATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV ++           A   ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAARQELDDAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           ++ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|291280540|ref|YP_003497375.1| DNA mismatch repair ATPase MutS [Deferribacter desulfuricans SSM1]
 gi|290755242|dbj|BAI81619.1| DNA mismatch repair ATPase MutS [Deferribacter desulfuricans SSM1]
          Length = 851

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 75/224 (33%), Gaps = 12/224 (5%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
               L+   Q  +       R   + +  R        L  S  V  ++          +
Sbjct: 320 FDQELKNNIQNLLKNVYDIERIASRLSAKRANARDLVWLKNSIKVLPEIKAYLINSNDPI 379

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-------YFLPEEIHQR 540
           L         L++ Y+ +     D+  LQ     +                     +  R
Sbjct: 380 LKEFGEQFDNLEDIYELIDKSIVDDPPLQITAGGIIKTGFNNHIDELKKVKDDSTTLLAR 439

Query: 541 LCERGFGEL-LKQLD-RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           + ++   +  +  L  +  +  G +   +++++  V   + +   L    R ++ + +E+
Sbjct: 440 IEQKEREKTGITNLKVKYNKVFGYYIEVSKSHLSKVPDYFIRKQTLVNAERFITDELKEL 499

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ---EAMIE 639
           E +I +  +K    +    I I  +V  +I +I SQ    A+++
Sbjct: 500 EVKILEAESKLTELEYQQFIEIREKVEKEIERIRSQANKIALLD 543


>gi|257053250|ref|YP_003131083.1| Protein of unknown function DUF460 [Halorhabdus utahensis DSM
           12940]
 gi|256692013|gb|ACV12350.1| Protein of unknown function DUF460 [Halorhabdus utahensis DSM
           12940]
          Length = 658

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/204 (10%), Positives = 67/204 (32%), Gaps = 23/204 (11%)

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPAILQEQYQ 503
              +++         S   +   L + + +   +  E   L   +     H    +    
Sbjct: 307 EKLRRSFDAAAWTPDSDLPVDEKLHRTREAATDNDHERDALAAALEAYDDHADQFERVAA 366

Query: 504 ELADIRYDNNELQKLW------SFLFSDFVEQ---KYFLPEEIHQRLCERG-----FGEL 549
           ++         L ++         +  D  ++        E   + L           + 
Sbjct: 367 KVPPREEVGPVLARVVAGEESVESVLDDLADEEGEPAETSEHTPRELTAEEKQIKRLQDR 426

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           +++L+  V D      T +  I D+R   + A +  +      R+   +E++  ++  + 
Sbjct: 427 VERLESHVEDLNETIETKDGTISDLRDKLESARSEQRAETRKRREVTRLERENDRLEREL 486

Query: 610 EAEKTAILISILHEVHIQIHQIES 633
           +AE+       + ++  ++ ++++
Sbjct: 487 DAER-----ERVEDLEGKLERLKA 505


>gi|329663377|ref|NP_001193017.1| disks large homolog 5 [Bos taurus]
 gi|297491546|ref|XP_002698933.1| PREDICTED: discs, large homolog 5 (Drosophila) [Bos taurus]
 gi|296472061|gb|DAA14176.1| discs, large homolog 5 [Bos taurus]
          Length = 1920

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 33/331 (9%), Positives = 91/331 (27%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +L       +     
Sbjct: 303 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNSDLSRLEQMEEENQRLLKQTEMLTQQRDTA 362

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E                      
Sbjct: 363 IQLQHQCALSLRRFEAIH--HELNKATAQNKDLQWEMELLQSELTELRTTQAKTAKESEK 420

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
               +D      Y   + +R Q + +    +        K  +   ++K  S+ +     
Sbjct: 421 YKEERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAASEEMEALRQ 479

Query: 472 VK--GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +K    +    + +EA +L                         + + L   L     E 
Sbjct: 480 IKDTVTMDAGRANKEAEILR-----------------------KQCKALCQELKEALQEA 516

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 517 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 573

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+   +   +  +   L++ 
Sbjct: 574 DVSRELKELKEQME--SQLEKEARFRHLMAH 602


>gi|114601371|ref|XP_517897.2| PREDICTED: centrosomal protein of 120 kDa isoform 3 [Pan
           troglodytes]
          Length = 960

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 619 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 676

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++     S      ++    + ++  + + +Q S+ + K   
Sbjct: 677 AEYTILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDC 736

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   +  L           Q+L D       L+K +         +     +  
Sbjct: 737 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 793

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 794 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 850

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+   +  A  E +        L ++  +++++  QE
Sbjct: 851 LEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 888


>gi|50547419|ref|XP_501179.1| YALI0B21384p [Yarrowia lipolytica]
 gi|49647045|emb|CAG83432.1| YALI0B21384p [Yarrowia lipolytica]
          Length = 738

 Score = 46.0 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 83/248 (33%), Gaps = 7/248 (2%)

Query: 393 RSFNTPDERAELEIHLKNCINHIKDQK----LRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
            +     E  EL+  +++    I+D+               + + +  Q          +
Sbjct: 169 ETMAPSHELKELKDEVESLKMAIRDRDGIIEEAESSLNQFSELVSRNEQLVSELEMKDRK 228

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
                     ++   +  + +   +   S +   +E   L   + H   + E   E+  +
Sbjct: 229 ISDLQNDVSSKRREFRDTIDALEAEYMHSSQEYQKEVEQLRANLGHAHTVNETIVEMESM 288

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
                   ++ S +     +++  L  +I  RL E+       +    +    L     +
Sbjct: 289 VASLESGLRI-SKVNEQEAKERLGLMADIENRLLEKEQELAAVKERLDITKGQLGGGDGD 347

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           + + +     ++ LA  KR   L   K E+  Q       G++E+   +   L E   Q+
Sbjct: 348 SKLKEELDAVKKELAESKRE--LEAAKNEVTSQKTLSRDMGDSEELEEVKKQLAETKKQL 405

Query: 629 HQIESQEA 636
            +++S +A
Sbjct: 406 QELQSVDA 413


>gi|168263298|ref|ZP_02685271.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|205347860|gb|EDZ34491.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 1108

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F     +     +  ++    +  +  +   +Q++L   +  K    R       + N P
Sbjct: 18  FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77

Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +   L+ Q   L D           + L   +     +      E   ++   R   + 
Sbjct: 78  KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137

Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598
           L QL +Q  DA       E         A +   +    QA +   +  +   +  ++  
Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197

Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +++A++ ++   +++  L + L  +  Q++ +  +EA
Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237


>gi|167553561|ref|ZP_02347310.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205322009|gb|EDZ09848.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 1108

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F     +     +  ++    +  +  +   +Q++L   +  K    R       + N P
Sbjct: 18  FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77

Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +   L+ Q   L D           + L   +     +      E   ++   R   + 
Sbjct: 78  KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137

Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598
           L QL +Q  DA       E         A +   +    QA +   +  +   +  ++  
Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197

Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +++A++ ++   +++  L + L  +  Q++ +  +EA
Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237


>gi|121605125|ref|YP_982454.1| ATPase [Polaromonas naphthalenivorans CJ2]
 gi|120594094|gb|ABM37533.1| ATPase AAA-2 domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 867

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 70/203 (34%), Gaps = 4/203 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++KYI + +   R ++K          +  +++    K +      + + A++    ++H
Sbjct: 317 YRKYIEKDAALERRFQKILVGEPTVEATIAILRGLQEKYETHHGVQITDPAIVAAAELSH 376

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL- 553
             I      +   I   +    K+   + S            I  ++          +  
Sbjct: 377 RYITDRFLPD-KAIDLIDEAAAKVKIEIDSKPEVMDRLDRRLIQLQIEREAVRREKDEAS 435

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            ++           +  I D+ + +Q   A     + +  + + I  QI + T KG+  K
Sbjct: 436 QKRFGLIEEEIGKLQKEISDMDEIWQAEKAQALGSKDVMEEIDTINTQIEEFTRKGDFNK 495

Query: 614 TAIL-ISILHEVHIQIHQIESQE 635
            A L    L E+  ++ Q +  E
Sbjct: 496 VAELQYGKLPELKKRLKQAQDTE 518


>gi|332019192|gb|EGI59702.1| Myosin heavy chain, non-muscle [Acromyrmex echinatior]
          Length = 2033

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 96/270 (35%), Gaps = 7/270 (2%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             + +L  +  PL+++  K+E +        ++ ELE  L +    I++++ R       +
Sbjct: 919  QWWRLYTKVKPLLEVT-KQEEKLTQKEDELKQQELEEILHDLEARIEEEEERSAALTQEK 977

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             +LQ        +        +K    + Q     + ++  L   + + +  L+E  +L 
Sbjct: 978  KKLQLNISDLEEQLEEEEAARQKLQLEKVQCDAKIKKLEEDLALSEDTNQKLLKEKKILE 1037

Query: 490  TLINHPAILQEQYQE----LADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
               N  +    + +E    L+ ++  +   +  L   L  D  +++     +        
Sbjct: 1038 ERANDLSQTLAEEEEKAKHLSKLKAKHEATIADLEERLLKDHQQRQEVDRSKRKVETEVS 1097

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E L +   QV +  L     E  +  V     +  A   + +   R+ E    ++ +
Sbjct: 1098 DLKEQLAERKTQVEEMQLQLGKREEELNQVMAKMDEEGAAKAQAQKALRELESQLAELQE 1157

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               + E            +++ ++  ++++
Sbjct: 1158 -DLEAEKAARGKAEKQKRDLNEELEALKNE 1186



 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 75/226 (33%), Gaps = 17/226 (7%)

Query: 418  QKLRYYYSQAI---RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
            +  R    + +    ++   +  +     +      ++    +          +   +  
Sbjct: 1739 ENERDELQEEVNNNANKGTLMLDEKRRLEARIATLEEELEEEQSNAEIVMDRARKGQIVI 1798

Query: 475  KLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDFVEQKYF 532
            +        E +    L +H  +L+ Q +EL       +  +  K  + +     +    
Sbjct: 1799 EQLTTDLATERSTTQKLESHKMLLERQNKELKAKLTELETAQRAKTKATIQQLESKINNL 1858

Query: 533  LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +   +        ++ ++L++++++  L       N    ++   QA  +  R + L 
Sbjct: 1859 DEQLETEAKERFAQQKINRKLEKKLKELSLQLEDERRNSDQYKE---QAEKVNVRMKALK 1915

Query: 593  RQKEEIEKQIAQ-------VTAKGEA--EKTAILISILHEVHIQIH 629
            RQ +E E++I++          + +   E    L+  L  +  ++ 
Sbjct: 1916 RQLDEAEEEISRHKTMKRKAQREMDDITESHEELMRELTHLKNKLR 1961



 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 93/278 (33%), Gaps = 32/278 (11%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
              EK+  ++           +E+ +     E+  LE    +    + +++ +  +   ++
Sbjct: 1002 QLEKVQCDAKIKKLEEDLALSEDTNQKLLKEKKILEERANDLSQTLAEEEEKAKHLSKLK 1061

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS-----LRE 484
             + +              +  ++  R + +       ++  L + K   +        RE
Sbjct: 1062 AKHEATIADLEERLLKDHQQRQEVDRSKRKVETEVSDLKEQLAERKTQVEEMQLQLGKRE 1121

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              L         ++ +  +E A        L++L S L     + +            +R
Sbjct: 1122 EEL-------NQVMAKMDEEGAAKAQAQKALRELESQLAELQEDLEAEKAARGKAEKQKR 1174

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E L+ L  ++ D+   +A             QQ L   +      ++   ++K + +
Sbjct: 1175 DLNEELEALKNELLDSLDTTAA------------QQELRSKR-----EQELATLKKNLEE 1217

Query: 605  VTAKGE---AEKTAILISILHEVHIQIHQIESQEAMIE 639
             T+  E   A+        L  ++ Q+  ++  +A++E
Sbjct: 1218 ETSLHEATLADMRHKHTQELTALNEQMDALKKTKAVLE 1255


>gi|268598631|ref|ZP_06132798.1| replicative DNA helicase [Neisseria gonorrhoeae MS11]
 gi|268582762|gb|EEZ47438.1| replicative DNA helicase [Neisseria gonorrhoeae MS11]
          Length = 468

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520
            +       +    L       E ++L   ++ +PA        ++   +  +E + ++ 
Sbjct: 5   AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +     E +      + + L         ++L+       L +           + Y +
Sbjct: 64  SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    R R + RQ  E+  +IA+     +      L+        QI   ES     +G
Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171

Query: 641 F 641
           F
Sbjct: 172 F 172


>gi|240112562|ref|ZP_04727052.1| replicative DNA helicase [Neisseria gonorrhoeae MS11]
          Length = 462

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 14/178 (7%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                 +    L       E ++L   ++ +PA        ++   +  +E + ++  + 
Sbjct: 2   PPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIA 60

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               E +      + + L         ++L+       L +           + Y + + 
Sbjct: 61  KLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV- 113

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
              R R + RQ  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 114 ---RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQGF 166


>gi|197265113|ref|ZP_03165187.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197243368|gb|EDY25988.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
          Length = 1108

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F     +     +  ++    +  +  +   +Q++L   +  K    R       + N P
Sbjct: 18  FAATAPDAKQITQELEQAKAAKPTQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77

Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +   L+ Q   L D           + L   +     +      E   ++   R   + 
Sbjct: 78  KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137

Query: 550 LKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRL--LSRQKEEIE------ 599
           L QL +Q  DA       E  +          QA +L  +     L    +E+E      
Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGNAALSQAQSLSMQAESAKLKALVDELELAQLSA 197

Query: 600 ---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +++A++ ++   +++  L + L  +  Q++ +  +EA
Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237


>gi|168051256|ref|XP_001778071.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670510|gb|EDQ57077.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 538

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 48/381 (12%), Positives = 115/381 (30%), Gaps = 35/381 (9%)

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
              AG   + +    A+       ++     +    D    GL+      D     +   
Sbjct: 135 CAYAGAGRMDAICAEAIRAEPTFDVYGKEVIVFSNCDAGGDGLQLGSVCCDQNPYEIGRE 194

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDML---WKRETENRSFNTPDERA 402
            +    +  + + P    R        ++    LP   +        ++ R++   +  +
Sbjct: 195 KKNREAIRYQLKQPSMVERLDAIATETRVESTPLPSKQVEKVAIAECSQARNYERTNVNS 254

Query: 403 ELEIHLKNCINH-IKDQKLRYYYSQ-------AIRDRLQQLFQKYITEHSGYGRYWKKNA 454
                 +   N  +    L  YY +             ++L    IT+            
Sbjct: 255 SSRELGRPSTNMAVTPPVLIEYYQRVDLSGAGQQAREFKELISAQITQLQMAVEKMDNEF 314

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP------AILQEQYQELADI 508
             R       ++++    K    ++ S+   AL  + + H          +E     + +
Sbjct: 315 SLRQVLEEKDKIIEDQKKKIGDLQRASVM-DALKYSRLEHQFKETQAEWAKENKLAKSLM 373

Query: 509 RYDNNELQKLWSFL------FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
                E  +L +         ++    +  L ++  ++L         +QL R++ +   
Sbjct: 374 ELTKQECMELRNQYQEEKNRMAELEAGRSKLEDDFRRQLESSKTEN--EQLKRRIAELEA 431

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
              T      +V         L K+   L  Q +E + QIA + ++         +  L 
Sbjct: 432 EMITVTTQQGEVNPASTSLRELEKQVHALEEQLKERDTQIALLESQ---------VQELG 482

Query: 623 EVHIQIHQIESQEAMIEGFGK 643
            ++  +  + + E + EG G+
Sbjct: 483 ALNEDLTALLNGEQVGEGVGE 503


>gi|146310010|ref|YP_001175084.1| hypothetical protein Ent638_0345 [Enterobacter sp. 638]
 gi|145316886|gb|ABP59033.1| MscS Mechanosensitive ion channel [Enterobacter sp. 638]
          Length = 1103

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 77/214 (35%), Gaps = 18/214 (8%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
               + +      K     + +   S +   ++L + + S + + +   ++    N P +
Sbjct: 23  PDAKQITQELEQAKAAKPAQPETVESLQAALNALEERQGSLERAQQYQQVID---NFPKL 79

Query: 498 LQEQYQELADIRYDNNEL------QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
            Q    +L ++R +  +         L   +     +      +   ++   R   + L 
Sbjct: 80  SQTLRSQLTNLRDEPRDAPLSMTSDALNQEILQVSSQLLEKSRQAQQEQERAREIADSLS 139

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE---------KQI 602
           QL +Q  DA       E  I        Q L+L      L  Q +E+E         +++
Sbjct: 140 QLPQQQTDARRQLNEIERRIGTQPGNTPQNLSLQAESAKLKAQVDELELAQLSANNRQEL 199

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           A++ ++   +++  L + L  +  Q++    +EA
Sbjct: 200 ARMRSELAQKQSQQLDAYLQALRNQLNSQRQREA 233


>gi|5032293|ref|NP_004004.1| dystrophin Dp140 isoform [Homo sapiens]
 gi|133778296|gb|AAI27104.2| DMD protein [Homo sapiens]
          Length = 1225

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 69  ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 124

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
            +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 125 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 184

Query: 323 ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                     D   +    + I+     +          L                 F  
Sbjct: 185 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 243

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 244 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 303

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
           +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 304 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 363

Query: 493 NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
               + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 364 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 422

Query: 550 -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 423 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 482

Query: 609 GEA 611
            + 
Sbjct: 483 TDE 485


>gi|118400729|ref|XP_001032686.1| Kinesin motor domain containing protein [Tetrahymena thermophila]
 gi|89287030|gb|EAR85023.1| Kinesin motor domain containing protein [Tetrahymena thermophila
           SB210]
          Length = 1284

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/322 (10%), Positives = 110/322 (34%), Gaps = 19/322 (5%)

Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES-LPLVDMLW 386
                  I+ V+       R   V    GE  + +     +   +   + +    +    
Sbjct: 664 REQILNKIEEVINENDASRRTVKVGGRNGESAEQYAERSSRNLRQLKEMLADQDFLIQEK 723

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
           ++  + ++    +++ EL   L+   N IK++  R  Y Q   ++L++  ++        
Sbjct: 724 RQRLKQKNKELREQQVELRNQLQYLENDIKEKDARVQYVQDQNEQLKEQIERDREIIQLK 783

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLS-----KKPSLREAALLLTLINHPAI---- 497
               +   ++ ++       ++  L + K             E  +    + +       
Sbjct: 784 IDKEELLEKNDEELRELIDRLKIKLQRRKEECLMLKDNIDKVERDIYQQRVFYEEEKNSM 843

Query: 498 ---LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQ 552
              +++      D +  N ++Q++ +      ++ +  L +++ + L    + +  +   
Sbjct: 844 VRQIKDLTNAYEDEKVRNQDIQRI-NENLDYQIDNQERLLKKLQEDLELSNKRYDNIQIM 902

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG--- 609
              +   +             + +   +A  L  +   L R+ +E   QI +   +    
Sbjct: 903 YQEEQSLSKELKLAQAVYEKRIDEAEDRAQTLEVKLNKLKRRFQEERNQIVEEKDQELIK 962

Query: 610 EAEKTAILISILHEVHIQIHQI 631
           + E TA L + + ++  ++ ++
Sbjct: 963 KKEATARLKNEIKDLERRVQEL 984


>gi|268558976|ref|XP_002637479.1| Hypothetical protein CBG19196 [Caenorhabditis briggsae]
 gi|187024443|emb|CAP36487.1| hypothetical protein CBG_19196 [Caenorhabditis briggsae AF16]
          Length = 2696

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 36/337 (10%), Positives = 97/337 (28%), Gaps = 28/337 (8%)

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
              +K        +  D          ++ +            +      D  S  +   
Sbjct: 650 ENRFKYVQHKWTEWQMDKNSTTKVESVMEEIQMWQTD-----VLEFIGKVDNSSITKKEE 704

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
               +K I       DM        +  N  +E+      L +  ++IK +  +      
Sbjct: 705 VEETQKRISSFKNAADMHKTTLETLKEENKNEEQISRINVLIDKNDYIKTRLDQLSQKVE 764

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           +   L+ +    I +          N     Q    ++          L  +   +   L
Sbjct: 765 LASLLKIVEDVQIWQEEMVEIIRNMNQVVTTQSNNQEQFEHVRRKIEDLKVEVDKKSEHL 824

Query: 488 LLTLINHPAILQEQYQELADIR-YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
                       E  + L+    +     + + +       EQ      E+ ++L     
Sbjct: 825 ------------EACKTLSQNETFQTQLYKTIQN------QEQIRLTTLELQEKLEITKL 866

Query: 547 GELLKQL----DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
             +++++    +  +    +   T  ANI +  +   +   L +     S + +E++K  
Sbjct: 867 IRVVQEIQMWQEEAIEIIRMLDRTQPANIQEANELIDRVHDLQQTIEHKSSRIQEVKKMS 926

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                  + E+   +   L  + +++ +   Q+ +++
Sbjct: 927 QVPEFVQKMEEVEHVQEQLKHLTVELEEKLEQQKLVK 963


>gi|70993434|ref|XP_751564.1| DNA repair protein Rad50 [Aspergillus fumigatus Af293]
 gi|66849198|gb|EAL89526.1| DNA repair protein Rad50 [Aspergillus fumigatus Af293]
          Length = 1312

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 101/280 (36%), Gaps = 30/280 (10%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-------QKLRYYYSQAIR 429
            ++      W R ++    +   E  +  +     +N +++       +  +    +A+ 
Sbjct: 726 RAVSTAYDTWTRLSKTEIPDLEKEEDQYALQRDELLNQLENHDKIVSEKIEKKRDVEALS 785

Query: 430 D------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM----QSSLVKGKLSKK 479
                  R +   +   ++        + N   R  +   + +     ++  +K  LSK 
Sbjct: 786 KTVNTIVRYESEIKTIRSQIQDLSSNQQDNTATRTLEDIQEEIAGIGDKTRALKKTLSKL 845

Query: 480 PSLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            + RE A   T +N+  + L++   +L ++++       L + +  ++        E I 
Sbjct: 846 INDREQA--RTEMNNLELQLRDARSKLDNVKFQLERKSDLLARI-EEYKNLNNQQREAIT 902

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           +   +R   EL  +L +        S   EA   +++QG  Q            RQ +  
Sbjct: 903 KA--DRDIEELTPELLKYQAQYDDISQRVEAREREMQQGISQLSERI-------RQLDLA 953

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            ++I     +G   +       L  +  +I Q+E+++A I
Sbjct: 954 TEEIDSYNERGGPSQLERSRRELQTIEAEISQLEAEQANI 993



 Score = 37.2 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 67/227 (29%), Gaps = 14/227 (6%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            D+ L+    Q    +LQ   Q+   + +      +     +          +    K  
Sbjct: 295 PDEWLQSNLEQFESKQLQYQQQEEAQKENYMEIKDRIEQARQKLGVKQAEYGKYENDKAN 354

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL------FSDFVEQ 529
             ++   R+        +H       +  + D    ++ ++K+   L            +
Sbjct: 355 FERQVERRQRMTREIARSHN---IRGFDNIQDQSDIDDFMRKIRKLLKEQNQALERVKRE 411

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 E+   L E G  +    L      A       +    + +    +         
Sbjct: 412 AQTELREVQSTLNEIGQRK--SALQESKNAAKRQIGANDKEASNYQAKLNEIDVDEGVQA 469

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +    E+I  ++       +  ++A L   + +++ ++H +E + A
Sbjct: 470 AVEANIEDISSRLNHAK---DRARSASLDKEIQDMNSELHALEDEGA 513


>gi|322411795|gb|EFY02703.1| hypothetical protein SDD27957_05270 [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 358

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 22/103 (21%)

Query: 44  PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV 103
           P HD    SF        +  FS  ++GD + F+  + G +F E+V  L           
Sbjct: 34  PDHD----SFRIFADTNTFKWFSRDIQGDVIDFVQLVAGVTFKEAVSYL--------ETG 81

Query: 104 DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDE 146
           D +  K          +IE A   F + L     ++   YL+E
Sbjct: 82  DFEQTK----------VIEEAYQPFQYYLHEEPFQQARTYLNE 114


>gi|300865770|ref|ZP_07110526.1| DnaB domain protein helicase domain protein [Oscillatoria sp. PCC
           6506]
 gi|300336231|emb|CBN55679.1| DnaB domain protein helicase domain protein [Oscillatoria sp. PCC
           6506]
          Length = 1060

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 3/116 (2%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L  ++  P  +    + L    +     Q ++      + E K      +   L 
Sbjct: 11  AEEAILGGILIDPEAISRIAELLRPDFFAITAHQVIYKAALDLYFEGKPTDLMTLTTWLA 70

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           +R     L+Q+  Q + A L   T  A  +D      +   + ++      +  ++
Sbjct: 71  DRNK---LEQIGGQSKLAQLAERTVSAVNIDQYAILVEDKHIRRKLIHAGNEIVQL 123


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 73/209 (34%), Gaps = 7/209 (3%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           +LQ +    I E                 +GPS R       K K  +   + E    + 
Sbjct: 572 KLQMIADDDIEEVFSACNIKGPIPSWNRTQGPSCRRRARDTNKLKKKQGIRISEMQQHMG 631

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
            I    + + Q Q        +  + +L   +     E    L E +  +     + EL 
Sbjct: 632 NIQD-ELRKTQKQLYEAEEERDRAVDELRE-MKKVAQEANMRLSEALSSKRSGELYTELS 689

Query: 551 K---QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
                L    R+  L     E+  +++ +     L L +R   + + K+E+   IA++T 
Sbjct: 690 AAKKSLSDATRELQLKEKGMESLRLELEKVQLVELKLAERDAAVDKLKKELN--IAKITE 747

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEA 636
               +  +   + + E+  ++ + ++ EA
Sbjct: 748 SHTVDSLSESKARIQELERELEKKKNSEA 776


>gi|152974901|ref|YP_001374418.1| hypothetical protein Bcer98_1097 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023653|gb|ABS21423.1| conserved repeat domain [Bacillus cytotoxicus NVH 391-98]
          Length = 743

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 75/254 (29%), Gaps = 10/254 (3%)

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
           E+ S    +         K  ++ + D   +      I+   Q L ++  T+     +  
Sbjct: 347 ESHSILHNETSKTEIDAAKEKVSQLPDNSNKTELLNEIKKAQQLLKEREATQLKNAQQAV 406

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKP--SLREAALLLTLINHPAILQEQYQELA-- 506
                       +  L +  + + K   +   +L E  +L   I     L     E    
Sbjct: 407 NALFSDDKHTILNDSLTEKEIKEAKQKVELVSNLPEKEVLQKEIERAEHLLNVLNETRKN 466

Query: 507 -DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            D  + +     L   +    ++      +++           L+K++++          
Sbjct: 467 VDSLFTDRFHTALKETITQVDIDNVKIKVDQLSD---NNDRQTLIKEIEKAQNLFNATQT 523

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
               N          A         +++   +I+   A+V    + E    L+  + +  
Sbjct: 524 LKLQNAQKAINDLFTANDHNTLKANITQ--ADIDASKAKVDQLPDTEDKTNLLDEIKKAQ 581

Query: 626 IQIHQIESQEAMIE 639
               +++  + ++E
Sbjct: 582 RLFSELQKAQELLE 595


>gi|296230255|ref|XP_002760649.1| PREDICTED: serine/threonine-protein kinase MRCK alpha isoform 4
           [Callithrix jacchus]
          Length = 1699

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWS---ATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV ++           A   ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAARQELDDAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           ++ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|303310557|ref|XP_003065290.1| spindle associated family protein [Coccidioides posadasii C735
           delta SOWgp]
 gi|240104952|gb|EER23145.1| spindle associated family protein [Coccidioides posadasii C735
           delta SOWgp]
          Length = 1616

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 65/220 (29%), Gaps = 18/220 (8%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           ++RL    ++   +    GR    ++        +Q    S    G  + + S  E   L
Sbjct: 755 KERLYHEIEELKLQRRFDGRSIAGDSIFERSASRAQDRSASRASDGTRASRMSDTERESL 814

Query: 489 L------------TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                          + +  +  +  + +++I   +   Q     +     E +    E 
Sbjct: 815 ETKNGELRDQVSTLKLENQGLRAQLDEYMSEIETMDRAYQ---EDMDQAEEEVQTLQLER 871

Query: 537 IHQ-RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                L E    EL         +        +    + ++   +     +  R L  + 
Sbjct: 872 DQAMHLAEEREAELQDLKAEAQEEINALEDELDLKTDEGQRMEAELRNQQENLRALQAEM 931

Query: 596 EEIEKQIAQVT--AKGEAEKTAILISILHEVHIQIHQIES 633
               + I ++   A+   +K   +   L + + ++  +E 
Sbjct: 932 RSANEGILRLEEDAQNNLQKYKAVQQELEDANRELEALEK 971


>gi|325953892|ref|YP_004237552.1| hypothetical protein Weevi_0252 [Weeksella virosa DSM 16922]
 gi|323436510|gb|ADX66974.1| hypothetical protein Weevi_0252 [Weeksella virosa DSM 16922]
          Length = 1277

 Score = 45.6 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 106/303 (34%), Gaps = 16/303 (5%)

Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
           I G R      ++ + P +      KT  +     ++       K   EN       E+ 
Sbjct: 617 IQGIRDKINSPTKTKTPANSSTGTTKTKSKTHSGRTVDPNKEALKVIEENYKTELEKEKQ 676

Query: 403 ELEIHLKNCINHIKDQKL-RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
            LE   K  +  ++++++ R  Y++ ++D       K +     Y +   +  +  +++ 
Sbjct: 677 ALEKIRKEKLTALQNEEIDRITYNEKMQDITDSHNAKLLLLEINYAKQRIQYIKGAEKEA 736

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS- 520
              R+ +       LS     R    +  LI+   ++ ++  +L+     + E++ +   
Sbjct: 737 SQTRIAEIQNSIIDLSTALKERAEKEIKALIDSQRVIDDELFKLSAESL-DKEIKNIQKG 795

Query: 521 ---FLFSDFVEQKYFLP--EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
               L S     K  +    ++   L           +++            E  +  V+
Sbjct: 796 TDVQLESIDERNKELIRKHAKLTDDLNNPELSA--NAIEQLKLVEEAQKKNEELRLKVVK 853

Query: 576 QGYQQALALYKRFRLLSRQKEEIE----KQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
              ++      R + +  + +E+E     +I   T K +AE     +  L E   ++ +I
Sbjct: 854 DSEKRIRE--TRLKYVLEEIKELENLAVSRIDHYTEKEQAEFDKKYLDKLRENENELEKI 911

Query: 632 ESQ 634
            +Q
Sbjct: 912 RNQ 914



 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 100/288 (34%), Gaps = 24/288 (8%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            S I  +G+++F+ L+      VD   K    +   +  ++R EL + +   I     ++
Sbjct: 349 FSAIGSHGQSSFQGLLNSVKETVDWFTKMIETSPVDSLREQRNELNLLVGQLIIANNQEE 408

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           +R      I  +  +       E S   +     +    +     RL   S  + +++++
Sbjct: 409 VRSSLMSEIASKYPEYLNLIDAERSSTEQLSSALSVLNQEYENKIRLALISEEQNRITEE 468

Query: 480 PSL---REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL-PE 535
            +    ++   +  L+  P + +  Y E++      +E Q++ + +    V+ K      
Sbjct: 469 QTRLIGKQREAIKALL--PELAKYGYTEVSFSALSPSEQQRVGNQILKKSVQNKGEDLIN 526

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           E+     E      L ++ +       W      N    ++   Q               
Sbjct: 527 ELSTSTREFAGERNLNKVKQASEFQKNWENFNSINEKLNKERLHQI-------------- 572

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIEG 640
            ++     +   KG  E  A     L  +  Q    +QI +QE +I+G
Sbjct: 573 -KLTNAQNESYIKGLKETLAQEEEELKLMKKQGANQNQILAQEKLIQG 619


>gi|221503857|gb|EEE29541.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 2595

 Score = 45.6 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 88/299 (29%), Gaps = 31/299 (10%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                     +K     L   D  ++RE E+      +   E           +K+   + 
Sbjct: 1508 RMVEETEELQKRYENELQHRDDGYRRELEDNQGRLQEMLKEANERADAANKKVKEANEKA 1567

Query: 423  YYSQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
               QA+ +R  L++ FQ  +       +      R   QK   +      L +       
Sbjct: 1568 --KQALSERAALEKSFQAEMENMKKQHQTELTQIRESFQKEAEKSKKNLQLQRSLSIDGM 1625

Query: 481  SLREAALLLTL------------INHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFV 527
              R    L  L            + + +      ++L A I     E +     L  +  
Sbjct: 1626 KRRHQQELAALRADSQTALSAAKLEYESAAASHEEKLKAAIESVKKEYE---EALLQETR 1682

Query: 528  EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
            E +    +   +   E+     + ++D+  R +       +       +  ++ LA   +
Sbjct: 1683 ENEKLKKQHTAE--VEKLSQSQVGKIDQHRRQSEHVIEELKKRHAAELEEMKERLAKSTQ 1740

Query: 588  FR--LLSRQKEEIEKQIAQVTAKGEAE-------KTAILISILHEVHIQIHQIESQEAM 637
                ++   +++  K +         E             +   E+ + + +++++  +
Sbjct: 1741 DYTAMVQELRDKAAKALNDAQKAHLEEIEKLKSKSKEQEEAHRREIALSMQELQTERGL 1799


>gi|148922230|gb|AAI46658.1| CGN protein [Homo sapiens]
          Length = 771

 Score = 45.6 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 75/208 (36%), Gaps = 11/208 (5%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLTL 491
           Q+ +         G    K    +D     + L +    K ++ ++  LRE  L  L   
Sbjct: 438 QVMELQNKLKHVQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALKGA 497

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           +    +     +     +    + ++L   +     +      E   ++        L +
Sbjct: 498 LKE-EVASRDQEVEHVRQQYQRDTEQLRRSMQDATQDHAVLEAE---RQKMSALVRGLQR 553

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALY----KRFRLLSRQKEEIEKQIAQVT- 606
           +L+    + G W +  + N  D+R   Q+ L L     +    L  + E +++++ Q   
Sbjct: 554 ELEETSEETGHWQSMFQKNKEDLRATKQELLQLRMEKEEMEEELGEKIEVLQRELEQARA 613

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
           + G+  +  +L   L     ++ +++++
Sbjct: 614 SAGDTRQVEVLKKELLRTQEELKELQAE 641


>gi|124004243|ref|ZP_01689089.1| replicative DNA helicase [Microscilla marina ATCC 23134]
 gi|123990313|gb|EAY29812.1| replicative DNA helicase [Microscilla marina ATCC 23134]
          Length = 492

 Score = 45.6 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 11/129 (8%)

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
             +   + EA L   LI  PA + +    L    +     ++++  +   F +       
Sbjct: 13  PPQAIDIEEAVLGAILIEQPAFM-QVIDLLQPDYFYKPAHKEVYQAILELFAQANPVDML 71

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + Q+L + G      +L+       +   T+  N     + +   L      + + R+ 
Sbjct: 72  TVTQQLRQTG------KLEMAGGPTFVMKLTSMVNSSANIEYHAHILV----EQAIKRRL 121

Query: 596 EEIEKQIAQ 604
            EI  +I +
Sbjct: 122 IEISSKIRK 130


>gi|39938822|ref|NP_950588.1| hypothetical protein PAM_336 [Onion yellows phytoplasma OY-M]
 gi|39721931|dbj|BAD04421.1| hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 158

 Score = 45.6 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 21/133 (15%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDY----WACCPFHDEKTPSF-HC 55
           MNY ++ IK +  H P+S      V   +   N +  ++       CP H  K P+  H 
Sbjct: 1   MNY-QEKIKHIQTHFPMS------VLLKK--LNIIPPNFNINHRFPCPIHQGKNPTCCHL 51

Query: 56  NDSKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAAIAG-VPLPVVDPKIEKKEKI 113
                  +C+ C    D +    A+    SF E++Q++A          ++ + ++  KI
Sbjct: 52  TSDNKI-HCWKCCKDYDIIDVYMAIRQIKSFHEAIQKIAGFMNSFEFKALNKQEKEITKI 110

Query: 114 Q----TDLIRLIE 122
                  L + ++
Sbjct: 111 TINPLKQLYQPMK 123


>gi|296230253|ref|XP_002760648.1| PREDICTED: serine/threonine-protein kinase MRCK alpha isoform 3
           [Callithrix jacchus]
          Length = 1719

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWS---ATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV ++           A   ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAARQELDDAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           ++ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|293359999|ref|XP_216738.5| PREDICTED: spectrin repeat containing, nuclear envelope 2, partial
            [Rattus norvegicus]
          Length = 3832

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 82/279 (29%), Gaps = 18/279 (6%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+         +   L       +   +      +  N  D  + ++ +LK C    + +
Sbjct: 1814 PELSELKKQYASVSNLFNTKKNALQDHFATFLNEQCKNFNDWFSNIKTNLKECFEPPETK 1873

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                   Q + D L         +         K    +         ++S  ++ +  +
Sbjct: 1874 LSMEQKLQKLSDFLTLGGGNSKIQQVETVLQHVKMLLPKAHVKELDSWLRSQELELENME 1933

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                              +     Q L        + + L  +L +     K        
Sbjct: 1934 SVCQA---------RAGELTSSFQQLLRLED----DCRSLSKWLTNHEENWKEVEASGER 1980

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
              L  +      ++ ++    A L  +  E  + +  +  +++  L  R++ L RQ  EI
Sbjct: 1981 TDLFSQVLT---RKREQFETVAQLTDSLKELGLTEGEETIKESTHLIDRYQTLLRQLREI 2037

Query: 599  EKQ--IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            E++  +     +   +    +I  + E+   +  + S E
Sbjct: 2038 EEESNLPAAEDQSFNDLAHDVIHWIKEIKESLMALNSSE 2076


>gi|242025142|ref|XP_002432985.1| myosin-18A, putative [Pediculus humanus corporis]
 gi|212518494|gb|EEB20247.1| myosin-18A, putative [Pediculus humanus corporis]
          Length = 1601

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 80/275 (29%), Gaps = 17/275 (6%)

Query: 373  KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR--- 429
             L            +           D+  +L    K     + D        + +    
Sbjct: 1000 ALYKNKCERTMRELEFTRRRLQQQHEDDLEQLVGLKKQLEKKLADAYEEVEEQRQVAGQW 1059

Query: 430  ----DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
                 +LQ                     + + +     +L+Q  L   K  K+   RE 
Sbjct: 1060 KRKVQKLQSEMNDLRLLLEEQSSRNNLLEKKQRKFDSEIQLLQEELRSEKNQKERLSREK 1119

Query: 486  ALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSD-FVEQKYFLPEEIHQ---- 539
             +          +++       ++   + +L  L   L              ++ +    
Sbjct: 1120 EMAYA---EKYSMEQNLSSFRLELELKDEKLLSLTQELEEFSRGGGSEQEITQLRKAKHD 1176

Query: 540  -RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
              +  +   E L +L  QV          E ++  +R+ +++ +A        SR   + 
Sbjct: 1177 LEIKLKEQEEELDELAGQVSMLEGNKLRLEMSLESLRKEHRREIAQRDDELDESRSNTQK 1236

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            + ++ +   + E E+  +L+   HE+  ++   E 
Sbjct: 1237 KIKVLEAQLESEHEERTLLVREKHELERRLADAEE 1271



 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 95/340 (27%), Gaps = 21/340 (6%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE-------DPDSFI 363
             +    I    D  D       K I ++   L   +    +L+           D +   
Sbjct: 1214 KEHRREIAQRDDELDESRSNTQKKIKVLEAQLESEHEERTLLVREKHELERRLADAEERG 1273

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R       + L+     L                  + +  +  L+   N ++D +L   
Sbjct: 1274 RHNKAADEDALLRARRDLKKTKALLRDAQIMLERAKQDSPSKAALRALKNQLEDVELARA 1333

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGR-YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
             +   +  L     +         R       R +     +  L        +   +   
Sbjct: 1334 SAVKAKQSLDSELNEVNGLLEEAIRAKGDAENRCQAALRETNALRMQVEENEEELAELLK 1393

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP-EEIHQRL 541
            +   ++  L       QE    LA+   +   L++  + L +         P   + Q+ 
Sbjct: 1394 KYRQIVQQLSAEQLANQETAGALAEAEVERASLKEQLAELSARLEANAVLDPLSGLAQKK 1453

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-------RLLSRQ 594
             E    EL  +LD +    G           +V +  +  +    +        R L R 
Sbjct: 1454 LEIRIKELESRLDLEQTTRGRLEVQITRLKENVERLNEDCIQARTKEQGATDTARKLQRT 1513

Query: 595  KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              E ++++A+  AK         +    E+  ++   E +
Sbjct: 1514 LRETKEELAKHQAKE-----QEALHKRKELEKRLETAEQE 1548


>gi|254468953|ref|ZP_05082359.1| replicative DNA helicase [beta proteobacterium KB13]
 gi|207087763|gb|EDZ65046.1| replicative DNA helicase [beta proteobacterium KB13]
          Length = 458

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 59/178 (33%), Gaps = 15/178 (8%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           +   S+ K +L       E +LL  L+     L +    ++   +   + Q ++  +   
Sbjct: 1   MADDSINKLRLPPHSLEAEQSLLGGLLIDNEALDKVADIVSVTDFYRQDHQIIYQHIHRL 60

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE----ANIVDVRQGYQQA 581
               +      + + L        +  L+     A            A I+  R   +  
Sbjct: 61  IERSQPADIVTVGESLESNSELNTVGGLEYLGLLAESTPTAANIRGYAQIIRERSIMRNL 120

Query: 582 L---------ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +         AL  + R   +  +E E +I Q+   G+ ++     + + E+  Q+ +
Sbjct: 121 VEVGTDIVDNALSPQGRDAQQLLDESESKIFQIAEAGKNDRIG--FTDIKELLPQVAE 176


>gi|189467288|ref|ZP_03016073.1| hypothetical protein BACINT_03674 [Bacteroides intestinalis DSM
          17393]
 gi|189435552|gb|EDV04537.1| hypothetical protein BACINT_03674 [Bacteroides intestinalis DSM
          17393]
          Length = 318

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79
          Y    ++  N      W   P  +E   SF  N  +  +Y F+    G+ ++    
Sbjct: 20 YSPVKQQGINL-----WYKSPLREETEASFKVNTERNQWYDFALGKGGNIIALAQE 70


>gi|221485765|gb|EEE24035.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 2595

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 88/299 (29%), Gaps = 31/299 (10%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                     +K     L   D  ++RE E+      +   E           +K+   + 
Sbjct: 1508 RMVEETEELQKRYENELQHRDDGYRRELEDNQGRLQEMLKEANERADAANKKVKEANEKA 1567

Query: 423  YYSQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
               QA+ +R  L++ FQ  +       +      R   QK   +      L +       
Sbjct: 1568 --KQALSERAALEKSFQAEMENMKKQHQTELTQIRESFQKEAEKSKKNLQLQRSLSIDGM 1625

Query: 481  SLREAALLLTL------------INHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFV 527
              R    L  L            + + +      ++L A I     E +     L  +  
Sbjct: 1626 KRRHQQELAALRADSQTALSAAKLEYESAAASHEEKLKAAIESVKKEYE---EALLQETR 1682

Query: 528  EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
            E +    +   +   E+     + ++D+  R +       +       +  ++ LA   +
Sbjct: 1683 ENEKLKKQHTAE--VEKLSQSQVGKIDQHRRQSEHVIEELKKRHAAELEEMKERLAKSTQ 1740

Query: 588  FR--LLSRQKEEIEKQIAQVTAKGEAE-------KTAILISILHEVHIQIHQIESQEAM 637
                ++   +++  K +         E             +   E+ + + +++++  +
Sbjct: 1741 DYTAMVQELRDKAAKALNDAQKAHLEEIEKLKSKSKEQEEAHRREIALSMQELQTERGL 1799


>gi|300795933|ref|NP_001179715.1| cingulin [Bos taurus]
 gi|297472708|ref|XP_002686087.1| PREDICTED: cingulin [Bos taurus]
 gi|296489602|gb|DAA31715.1| cingulin [Bos taurus]
          Length = 1194

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 74/236 (31%), Gaps = 35/236 (14%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            Q + +R +   Q+   E         +  R R      +  +     K K +  P   +
Sbjct: 400 LQELLERRKGEAQQSTKELQNMKLLLDQGERVRHG---LETQVMELQDKLKQAHGPEAAK 456

Query: 485 AALLLTLINHPAILQEQYQ----ELADIRYDNNELQKLWSFL----------FSDFVEQK 530
             L+  LI    +L+E  +        +R    EL  L   L               +Q 
Sbjct: 457 EVLMKDLIETRELLEEVLEGKQRVEEQLRLRERELTALKGALKEEVASRDQEVEHVRQQY 516

Query: 531 YFLPEEIHQRLCE----------------RGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
               E++ + + +                     L K+L+    + G W    + N  ++
Sbjct: 517 QRDTEQLRRSMQDVTQDHAALEAEKQKMSALVRGLQKELEETSEETGHWQNMFQKNKEEL 576

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           R   QQ L L      L  +  E  + + +    G+A   A     + E+  ++ +
Sbjct: 577 RATKQQLLQLRMEKDELEEELGEKIEALQR--ELGQARTGAGDTRQVEELKKELRR 630



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 86/267 (32%), Gaps = 24/267 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              W  E E  S      + E +   +       D+       + +  RLQ L Q+   + 
Sbjct: 886  KEWASEAEKTSGGLSRLQDETQRLRQALQASQADRDTARLDKELLVQRLQGLEQEAENKK 945

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA----ALLLTLINHPAILQ 499
                   ++     ++    +  +       +L      R       L   L+   +  Q
Sbjct: 946  RSQDDKSRQLKSLEEKVSRLEAELDEEKSTVELLTDRMNRGRDQVDQLRTELMQERSARQ 1005

Query: 500  EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
            +   +   +   N +L+            + +  P     +L  +   EL ++L  + R+
Sbjct: 1006 DLECDKISLERQNKDLKS------RLASSEGFQKPSASLSQLESQN-RELQERLQAEERE 1058

Query: 560  AGLWSATTEANIVDVRQGYQQALA-----------LYKRFRLLSRQKEEIEKQIAQVTAK 608
              +  +T       V++   Q              L  R + L RQ +E E++I ++ + 
Sbjct: 1059 KTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSLRVKALKRQVDEAEEEIERLDSL 1118

Query: 609  GEAEKTA-ILISILHE-VHIQIHQIES 633
             +  +        ++E +  +I  +E 
Sbjct: 1119 RKKAQRELEEQHEVNEQLQARIKALEK 1145


>gi|57867493|ref|YP_189156.1| hypothetical protein SERP1591 [Staphylococcus epidermidis RP62A]
 gi|57638151|gb|AAW54939.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
          Length = 370

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 39/347 (11%), Positives = 84/347 (24%), Gaps = 49/347 (14%)

Query: 53  FHCNDSKGFYYCF-SCHVKGDHLSFLSALLGC-----SFIESVQRLAAIAGVPLPVVDPK 106
            +       ++C+  C    D  + +   L       SFI+ +  L  I  + +      
Sbjct: 51  LYYYPETQLFHCYTGCG-SFDVFTLIEKRLKMEGKAHSFIDCITTLGKILEINI----NL 105

Query: 107 IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSR 166
             K + IQ  + ++ +   D+ +   K  + +      +ER +        K        
Sbjct: 106 TSKVKGIQKSVKKIHDW--DWLNKIQKKEKVQPQLKIHNERILTYFDEIYPKA------- 156

Query: 167 YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
                                L          Y      +  P     G +I    R   
Sbjct: 157 --------------WYQAGISLETMEKYQIKFYPEMFQTV-IPHHDHEGNLIGIRSRNWD 201

Query: 227 KGESVKYLNSPETI-----LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM 281
           K    K    P  I         G  LY  +     + +  +  +     S +       
Sbjct: 202 KEFVKKAKYIPTYINDTGYNHPLGYALYGLYQNKEAIIQRKKAMIVEGEKSCLF------ 255

Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
              +        V              LL      +++  D +   +        +    
Sbjct: 256 -SDTFYGEDNFVVAICGSNMSKYQAELLLNLGIEEVIIAIDKEYMQVDTPEFDEYMKKVK 314

Query: 342 LIPGNRVNFVLLSRGEDPDSF--IRCYGKTAFEKLIVESLPLVDMLW 386
            I      ++      D +     +     A +  + E + +   + 
Sbjct: 315 KIGKLFAPYIQTYHLTDTNGVLNYKDSPLDATKSELEEMMKVDKHIL 361


>gi|9630256|ref|NP_046683.1| hypothetical protein SPBc2p131 [Bacillus phage SPBc2]
 gi|16079095|ref|NP_389918.1| hypothetical protein BSU20360 [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221309942|ref|ZP_03591789.1| hypothetical protein Bsubs1_11246 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314264|ref|ZP_03596069.1| hypothetical protein BsubsN3_11167 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319186|ref|ZP_03600480.1| hypothetical protein BsubsJ_11093 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323462|ref|ZP_03604756.1| hypothetical protein BsubsS_11222 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81342020|sp|O31904|YORJ_BACSU RecName: Full=SPBc2 prophage-derived uncharacterized protein yorJ
 gi|2634429|emb|CAB13928.1| putative DNA replication initiation protein; phage SPbeta [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|3025609|gb|AAC13104.1| unknown [Bacillus phage SPbeta]
          Length = 378

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 92/320 (28%), Gaps = 61/320 (19%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKT------NAVKGDYWACCPFHDEKTPSF- 53
           M Y +     +   + I ++   +       +            Y   C  H+    S+ 
Sbjct: 1   MKYDK---DRVKESLTIEDI---HKILKDLGSENNLWDQQGNPIYRTVC--HNASGGSYK 52

Query: 54  --HCNDSKGFYYCFS-CHVKGDHLSFL-----SALLGCSFIESVQRLAAIAGVPLPVVDP 105
             + +++K  ++C++ C    D    +        +  SF ++++ +A IAG        
Sbjct: 53  LYYYHEAKQ-FHCYTECGDNFDVFELVIRAKSQKGINISFNQAIEYVAKIAG----RTFG 107

Query: 106 KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
              ++  I  DLI                          D   +     +       P  
Sbjct: 108 FGNRETYINNDLID-------------------------DWEWMGKFKKKKKIHIELPSF 142

Query: 166 RYSLREHLRQKGFSEEKII-EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT 224
             ++ +               +   +        +      +  P R    ++I    R+
Sbjct: 143 NETVLDVFVPYPHQLWLGEGISHKTLKEFEIGYYFRPHTEGITIPHRDLNNRLIGIRRRS 202

Query: 225 LSKGE-SVKYLNSPETIL-----FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278
           + K E    Y   P  +           NLY      N +++  +K +   S   ++  +
Sbjct: 203 MIKEEVDAGYKYMPLKVGNILYNHQTMMNLYGLHKTKNSIER-FKKVLIFESEKSVLKCQ 261

Query: 279 GYMDVLSLCQAGVQNVVSSL 298
            +    +   A   + +S+ 
Sbjct: 262 DFYGESNFTCAVCSSNISNF 281


>gi|255065872|ref|ZP_05317727.1| replicative DNA helicase [Neisseria sicca ATCC 29256]
 gi|255049783|gb|EET45247.1| replicative DNA helicase [Neisseria sicca ATCC 29256]
          Length = 445

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 52/159 (32%), Gaps = 12/159 (7%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E ++L  L+   +        +    +  +E + ++  + +   E +      + + L 
Sbjct: 3   AEQSVLGGLLLENSAWDRIADVVTGEDFYRHEHRLIFRAIANLINESRPADVITVQESLE 62

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                   ++L+       L +           + Y + +    R R + RQ  E+  +I
Sbjct: 63  RN------EELEAAGGFNYLITLAQNTPSAANIRRYAEIV----RERSIMRQLAEVGTEI 112

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           A+     +      L+        QI   ES     +GF
Sbjct: 113 ARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 149


>gi|224051645|ref|XP_002200595.1| PREDICTED: similar to golgi autoantigen, golgin subfamily a, 5
           [Taeniopygia guttata]
          Length = 736

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 82/213 (38%), Gaps = 8/213 (3%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           + +R     ++   E     +  K +     Q+    +   + +++ K     SL+E + 
Sbjct: 400 VAERKYLDEKRRADELQQQVKITKSHLESAKQELTDYKQKATRILQSKEKLINSLKEGSG 459

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           +  L ++ A   E  +   +      E+QKL   +     E +    +++ +        
Sbjct: 460 IEGLDSNTASTVELEELRHERDTQREEIQKLMGQIQQMRAELQDMETQQVSEA---ESVR 516

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVT 606
           E L+ L  Q+    +     EA +   +Q  +     LY+    L  + ++ E++I ++ 
Sbjct: 517 EQLQDLQEQISAHKMAKQEAEAELERQKQELRYTEEELYRTKNTLQSRIKDREEEIQKLR 576

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +   +  +       E+  ++HQ+   E +I+
Sbjct: 577 NQLTNKTLSSSSQ--TELENRLHQL--TETLIQ 605


>gi|237835277|ref|XP_002366936.1| viral A-type inclusion protein repeat family [Toxoplasma gondii ME49]
 gi|211964600|gb|EEA99795.1| viral A-type inclusion protein repeat family [Toxoplasma gondii ME49]
          Length = 2595

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 88/299 (29%), Gaps = 31/299 (10%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                     +K     L   D  ++RE E+      +   E           +K+   + 
Sbjct: 1508 RMVEETEELQKRYENELQHRDDGYRRELEDNQGRLQEMLKEANERADAANKKVKEANEK- 1566

Query: 423  YYSQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
               QA+ +R  L++ FQ  +       +      R   QK   +      L +       
Sbjct: 1567 -VKQALSERAALEKSFQAEMENMKKQHQTELTQIRESFQKEAEKSKKNLQLQRSLSIDGM 1625

Query: 481  SLREAALLLTL------------INHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFV 527
              R    L  L            + + +      ++L A I     E +     L  +  
Sbjct: 1626 KRRHQQELAALRADSQTALSAAKLEYESAAASHEEKLKAAIESVKKEYE---EALLKETR 1682

Query: 528  EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
            E +    +   +   E+     + ++D+  R +       +       +  ++ LA   +
Sbjct: 1683 ENEKLKKQHTAE--VEKLSQSQVGKIDQHRRQSEHVIEELKKRHAAELEEMKERLAKSTQ 1740

Query: 588  FR--LLSRQKEEIEKQIAQVTAKGEAE-------KTAILISILHEVHIQIHQIESQEAM 637
                ++   +++  K +         E             +   E+ + + +++++  +
Sbjct: 1741 DYTAMVQELRDKAAKALNDAQKAHLEEIEKLKSKSKEQEEAHRREIALSMQELQTERGL 1799


>gi|195586613|ref|XP_002083068.1| GD24899 [Drosophila simulans]
 gi|194195077|gb|EDX08653.1| GD24899 [Drosophila simulans]
          Length = 1771

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D +     AA  +   +   L        +     ED     +       + L       
Sbjct: 1404 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1463

Query: 382  VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                  +  ++          AE+    ++  +  + ++        + + +     K  
Sbjct: 1464 AAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1523

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                   R   + A   ++    Q   +  L +   S+K  L+   L   L N  +  Q+
Sbjct: 1524 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1580

Query: 501  QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                 A +   N EL+   + +           +         + ++L   G   LL+Q 
Sbjct: 1581 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1640

Query: 554  DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610
              +  D  +   T         V Q  +Q   L  R +LL R  +E E+++  + T K +
Sbjct: 1641 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1700

Query: 611  AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648
             ++    +    E ++ +I+ ++++     G G  S RL
Sbjct: 1701 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 1739


>gi|183985668|gb|AAI66177.1| LOC100158525 protein [Xenopus (Silurana) tropicalis]
          Length = 1601

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 95/265 (35%), Gaps = 22/265 (8%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            +     E E        ++ ELE  L++    +++++ R    Q  + ++Q   Q    +
Sbjct: 909  ETELFAEAEEMRARLAIKKQELEEILRDLEIRMEEEEERNQVLQNEKKKMQAHVQDLEEQ 968

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                    +K    +       + M+  ++  +      L+E  LL         + E  
Sbjct: 969  LDEEEAARQKLQLEKVTAEAKIKKMEEDILVLEDQNSKFLKEKKLLE------ERIAEST 1022

Query: 503  QELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEIHQRLCER---------GFGELLK 551
             +LA+       L KL     +    +E++    E+  Q L +             + + 
Sbjct: 1023 SQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIA 1082

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            +L  Q+ +  L  A  E    +++    +      +     +   E++ QIA++    E+
Sbjct: 1083 ELQAQIEELKLQLAKKE---EELQAALARGDEEVLQKNNTLKVVRELQAQIAELQEDLES 1139

Query: 612  EKTAILISILH--EVHIQIHQIESQ 634
            EK +   +     ++  ++  ++++
Sbjct: 1140 EKASRNKAEKQKRDLSEELEALKTE 1164


>gi|171911010|ref|ZP_02926480.1| hypothetical protein VspiD_07540 [Verrucomicrobium spinosum DSM
           4136]
          Length = 1354

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 35/81 (43%)

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           LKQ +++  +         A   +  Q   +   L +R   L+ + +E+E Q+ Q   +G
Sbjct: 670 LKQQEKRYEEEKAAGEEKTAAQQENLQVLARLKELARRQEALAEKIKEVENQLQQAKTEG 729

Query: 610 EAEKTAILISILHEVHIQIHQ 630
           + ++    +  L E   Q+ +
Sbjct: 730 QKQELEQQLKRLQEEQEQLLK 750



 Score = 38.3 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 69/213 (32%), Gaps = 16/213 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + +  R + L +K I E     +  K   + ++ +   +RL +      K      L+E
Sbjct: 701 LKELARRQEALAEK-IKEVENQLQQAKTEGQKQELEQQLKRLQEEQEQLLKDLD--DLKE 757

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD-------FVEQKYFLPEEI 537
                  ++ P       QE   +     ++++    L             +     E++
Sbjct: 758 R------MDRPENQANMAQEREQLDQAREQVREAADQLAQQQTGSAASAATKAQENLEKV 811

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                ER      +++ +  ++    ++  E     +            + R    Q +E
Sbjct: 812 RDEFRERTARRFAEEMKQLKQETADLASQQEKLAEQIAGQAAPQDQNKGKGRESKDQVDE 871

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +++++       +AE     +  L E   Q+ +
Sbjct: 872 LKERLQANQVSRQAETQRESLEKLMEQMRQLSE 904


>gi|268530746|ref|XP_002630499.1| Hypothetical protein CBG11240 [Caenorhabditis briggsae]
          Length = 1073

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 41/111 (36%), Gaps = 5/111 (4%)

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
             P ++   +      ++L +  R   +           +    +   + L+L  +  + 
Sbjct: 477 VQPNDMISLMQSTFEQQILAERQRLAEEHNRRMQEEAEKMAKFHEAMYRQLSL--QQEMS 534

Query: 592 SRQKEEIEKQIAQVTAK---GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +Q  E E  + +   +    +AE     ++   ++ ++  ++E + A IE
Sbjct: 535 QQQIREQELALQRHREELEKRDAELKREALARQQQIEMEAREVEQRRAAIE 585


>gi|15616591|ref|NP_244897.1| replicative DNA helicase [Bacillus halodurans C-125]
 gi|10176654|dbj|BAB07748.1| replicative DNA helicase [Bacillus halodurans C-125]
          Length = 454

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 12/184 (6%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S L   +   +    E A+L  +      L    + LA   +     Q+++  +     +
Sbjct: 2   SDLFADRTPPQNIEAEQAVLGAIFLEDHALVTASERLAPEDFYRAAHQRIYQVMLDLAEK 61

Query: 529 QKYFLPEEIHQRLCER------GFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQ 580
            +      +   L +R      G    L  L   V  A      ++       +R+  + 
Sbjct: 62  GEPVDLVTVTAELQDRKALDDVGGVAYLGDLANAVPTAANVEYYSKIVEEKSLLRRLIRV 121

Query: 581 ALALYKRFRLLSRQ----KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           A  + +       +     ++ EK I  V  +  +     +  +L E + +I  +++Q+ 
Sbjct: 122 ATNIAQEGYASEEEVDAILDDAEKTILDVAQRKNSSAFISIKDVLVETYDKIEMLQNQKG 181

Query: 637 MIEG 640
            I G
Sbjct: 182 EITG 185


>gi|332256080|ref|XP_003277145.1| PREDICTED: LOW QUALITY PROTEIN: myosin-XVIIIa-like [Nomascus
            leucogenys]
          Length = 2041

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 96/284 (33%), Gaps = 20/284 (7%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R        +   + L  +++  + E E++     ++       L+  +  + DQ  R  
Sbjct: 1608 RDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREK-----RELEGKLATLSDQVNRRD 1662

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +      RL++  ++     +               K    +L    L + + +   +++
Sbjct: 1663 FESE--KRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKN-QLEESEFTCAAAVK 1719

Query: 484  EAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR-- 540
                +   I      + +  +    +    + LQ+  + + +   E +  + E + +   
Sbjct: 1720 ARKAMEVEIEDLHXQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKL 1779

Query: 541  --LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
              L        ++ L++ + D  + S   E  I ++    +      KR   L+ + +E 
Sbjct: 1780 LWLSTPPLQSQVEFLEQSMVDKSMVSRQ-EVKIRELETRLEFERTQVKRLESLASRLKEN 1838

Query: 599  EKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             +++ +           E E    L   L +   ++ ++  +EA
Sbjct: 1839 MEKLTEERDQRIAAENREKEHNKRLQRQLRDTKEEMGELARKEA 1882



 Score = 37.2 bits (84), Expect = 8.2,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 89/292 (30%), Gaps = 36/292 (12%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             +      ++  VD   KR  +        E+       +   +   D +      Q ++
Sbjct: 1385 EWRLKYERAVREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADSEESQRALQQLK 1444

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNA---RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             + Q+L  +             +N    + + +             + KL ++   RE  
Sbjct: 1445 KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEEAQREKLQREKLQREKD 1504

Query: 487  LLLT-------LINHPAI-----------LQEQYQELADIRYDNNE-LQKLWSFLFSDFV 527
            +LL         +    +           L+ + Q+++     +   L K+   L     
Sbjct: 1505 MLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEA 1564

Query: 528  -----EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ------ 576
                 E++        Q L +     L  +++R  +       + +  + + RQ      
Sbjct: 1565 KVKDQEEELDEQAGTIQMLEQAKLR-LEMEMERMRQTHSKEMESRDEEVEEARQSCQKKL 1623

Query: 577  --GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
                 Q    Y+  + + R+K E+E ++A ++ +           +  ++  
Sbjct: 1624 KQMEVQLEEEYEDKQKVLREKRELEGKLATLSDQVNRRDFESEKRLRKDLKR 1675


>gi|323497355|ref|ZP_08102373.1| putative protein disaggregation chaperone [Vibrio sinaloensis DSM
           21326]
 gi|323317438|gb|EGA70431.1| putative protein disaggregation chaperone [Vibrio sinaloensis DSM
           21326]
          Length = 871

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 19/124 (15%)

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN------IVDVRQGYQQALAL- 584
                    L +    E+++ L++ +R      A  E          D      Q +A  
Sbjct: 411 LDTASARIALTQGAKPEVIESLEQTIRYQNNEKAALEKEHALFGIAEDEIAELTQDIASN 470

Query: 585 ----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                     +K+   L  Q + ++++I+     GEA+K       L+E+  Q+H+++ +
Sbjct: 471 EQELSDLNARWKQEVALVDQIKLLQQEISDAQQDGEADKEKQT--QLNELIDQLHELQGE 528

Query: 635 EAMI 638
             ++
Sbjct: 529 LPLV 532


>gi|297661816|ref|XP_002809425.1| PREDICTED: serine/threonine-protein kinase MRCK alpha-like [Pongo
           abelii]
          Length = 1748

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 49/124 (39%), Gaps = 15/124 (12%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQ 579
                        +    L  +   E +++L +QV ++       E       ++   ++
Sbjct: 439 LQYSTADGPLTASK---DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFR 495

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQ 630
           Q  A  K+ + L +++E++ K++ Q + + + +   +          +    E++ ++ +
Sbjct: 496 QIKAYEKQIKTLQQEREDLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTE 555

Query: 631 IESQ 634
           + +Q
Sbjct: 556 LHTQ 559


>gi|297484005|ref|XP_002707780.1| PREDICTED: serine/threonine-protein kinase MRCK alpha-like [Bos
           taurus]
 gi|296479322|gb|DAA21437.1| serine/threonine-protein kinase MRCK alpha-like [Bos taurus]
          Length = 1719

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 50/124 (40%), Gaps = 15/124 (12%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQ 579
                        +    L  +   E +++L +QVR++       E       ++   ++
Sbjct: 472 LQYSTADGPLTASK---DLEIKSLKEEIEKLRKQVRESSHLEQQLEEANSVRQELDDAFR 528

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQ 630
           Q  A  K+ + L +++EE+ K++ Q + + + +   +          +    E++ ++ +
Sbjct: 529 QIKAYEKQIKTLQQEREELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTE 588

Query: 631 IESQ 634
           + +Q
Sbjct: 589 LHTQ 592


>gi|254282000|ref|ZP_04956968.1| replicative DNA helicase [gamma proteobacterium NOR51-B]
 gi|219678203|gb|EED34552.1| replicative DNA helicase [gamma proteobacterium NOR51-B]
          Length = 465

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/164 (9%), Positives = 47/164 (28%), Gaps = 6/164 (3%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
            R   + + + ++       E +++ +L+          + +    +   E + ++  + 
Sbjct: 11  SRGQDADVARLRMQPHSLEAERSVIGSLLLSAEGWDSIAEMVTASDFYRPEHRAIFRQIA 70

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                 +      +  RL   G      +L+       L     +   V   + Y  A+ 
Sbjct: 71  QLIDRSEPVDVVTVADRLMATG------ELEAAGGHQYLTELAEQTPTVANIRAYAAAVH 124

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                R L    ++I         +   E        + ++  +
Sbjct: 125 QRAVLRKLIGAAQDIAATGYHPEGRSAEELVDEAERRIMQISEE 168


>gi|157736909|ref|YP_001489592.1| replicative DNA helicase [Arcobacter butzleri RM4018]
 gi|315636087|ref|ZP_07891343.1| replicative DNA helicase DnaB [Arcobacter butzleri JV22]
 gi|157698763|gb|ABV66923.1| replicative DNA helicase [Arcobacter butzleri RM4018]
 gi|315479607|gb|EFU70284.1| replicative DNA helicase DnaB [Arcobacter butzleri JV22]
          Length = 480

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 49/143 (34%), Gaps = 3/143 (2%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A+L ++  +P  L++    L    +     +K++  +     E      + I  ++  
Sbjct: 10  ERAVLSSIFFNPEELEDILGILKPKDFYLPAHKKIFEVMVKLHDEGMPIDEDFIRNKVNS 69

Query: 544 RGFGE-LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +   + +L ++          +   E     V++    +LA   +   +  +     + +
Sbjct: 70  KDVDDSILLEILSANPITNTLAYVREIKDSSVKRELA-SLATTIKKVAIEDEVS-ANEAL 127

Query: 603 AQVTAKGEAEKTAILISILHEVH 625
             +  +     T    S L ++ 
Sbjct: 128 DTIQGELYKISTDSATSELKDMQ 150


>gi|139439447|ref|ZP_01772888.1| Hypothetical protein COLAER_01908 [Collinsella aerofaciens ATCC
           25986]
 gi|133775226|gb|EBA39046.1| Hypothetical protein COLAER_01908 [Collinsella aerofaciens ATCC
           25986]
          Length = 465

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 63/175 (36%), Gaps = 18/175 (10%)

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +    EA +L  ++  P +++E   EL    +     + +++ +   +  +       
Sbjct: 23  LPQNQDAEANVLAAMLLSPEVVEEAQVELQPDDFYRPIHKTIYTAMVDMYNSRIPIDSIS 82

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +   L        + +LD    +A +     +         +Q   A+ +R  +L R+  
Sbjct: 83  LIDYLRS------INKLDAVGGEAYILELMGQTLS---LVNWQHHAAIVRRDSML-RELI 132

Query: 597 EIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIES-----QEAMIEGFGKM 644
               +I  +   A  + ++   L +    + +   +++S      E M+E + + 
Sbjct: 133 GATNEINALAYNAPTDTKEVVEL-AESKLLKVTAREVKSSYKTLTEFMVEAYNEA 186


>gi|3941320|gb|AAC82332.1| myosin [Schistosoma japonicum]
          Length = 802

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 89/244 (36%), Gaps = 22/244 (9%)

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
           +R ++E  +K     + D++ +      ++ ++    ++   +        +K  + +  
Sbjct: 234 QRGDMEQRIKELEERLADEEDQAANLSEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 293

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
           K    R +Q+ + +   +     ++        N     +   + L       N L KL 
Sbjct: 294 KDNQIRTLQAEMAQQDETIGKLNKDKK------NLEEQNKRTQEALQAEEDKVNHLNKLK 347

Query: 520 SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568
           + L S   E +             E+  ++L    +   E +  L+R  RD        E
Sbjct: 348 AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGVLKATQETVDDLERVKRDLEEQLRRKE 407

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI--LHEVHI 626
           A I  +   ++    L  +   L R+ +E++ +I ++    EAE+ A   +     ++  
Sbjct: 408 AEISGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 464

Query: 627 QIHQ 630
           ++ +
Sbjct: 465 ELEE 468



 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 79/264 (29%), Gaps = 32/264 (12%)

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
                 L+  I  +++       +++  ++ +Q  +  + E              +    
Sbjct: 428 QRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLESELEEVVDRLEEQDGVTAAQSDLT 487

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
             +R  +   +K  L       E A+          + E   +L        + +K  S 
Sbjct: 488 K-KREAELMKLKRDLEDARLQNEQAIAAMRKKQNDAVNELADQLDQANKAKAKAEKERSQ 546

Query: 522 LFSDFVEQKYFLPEEIHQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVD 573
             ++  +    +   +  +L              E+  +LD   R+    S+T   +  +
Sbjct: 547 FKAELDDAHNQVDSIMKAKLNSEKTVKALEVQLQEVSVKLDEANRNLSEQSSTKARSSQE 606

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQV-------------------TAKGEAEKT 614
           V +  +Q      +   LS+ K+++  Q+ +                        + +  
Sbjct: 607 VSELQRQLEEAESQLSQLSKVKQQLSAQLEEARHNLEDESRMKAKLNGEVRNLSSDLDSL 666

Query: 615 AILISILH----EVHIQIHQIESQ 634
              +        ++  Q+ +++ +
Sbjct: 667 RETLEEEQSAKGDLQRQLQKLQGE 690


>gi|295702826|ref|YP_003595901.1| ATP-dependent chaperone ClpB [Bacillus megaterium DSM 319]
 gi|294800485|gb|ADF37551.1| ATP-dependent chaperone ClpB [Bacillus megaterium DSM 319]
          Length = 867

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/207 (9%), Positives = 69/207 (33%), Gaps = 10/207 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI +     R +++          +  +++    + ++    ++ + A++   +   
Sbjct: 324 YRQYIEKDPALERRFQQVLVEEPSVEDTISILRGLKERFEIHHGVNIHDRAIVSAAVMSD 383

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-----ELL 550
             + +++     I   +     + + + S   E        +   + E           +
Sbjct: 384 RYISDRFLPDKAIDLIDEACATIRTEIDSMPSELDEVTRRVMQLEIEEAALSKETDQASI 443

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            +L+   ++        +   +   +  Q    +      L + K ++E    +   K +
Sbjct: 444 TRLEAIRKEVSDLRERADTMKLQWEKEKQSIQTVQDVREQLEKAKRDLE----EAEGKYD 499

Query: 611 AEKTAIL-ISILHEVHIQIHQIESQEA 636
             K A L    +  +  ++ Q+E   A
Sbjct: 500 LNKAAELRHGRIPALEKELKQLEETAA 526


>gi|168231385|ref|ZP_02656443.1| transporter, small conductance mechanosensitive ion channel (MscS)
           family [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194471740|ref|ZP_03077724.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194458104|gb|EDX46943.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205334378|gb|EDZ21142.1| transporter, small conductance mechanosensitive ion channel (MscS)
           family [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 1108

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F     +     +  ++    +  +  +   +Q++L   +  K    R       + N P
Sbjct: 18  FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77

Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +   L+ Q   L D           + L   +     +      E   ++   R   + 
Sbjct: 78  KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137

Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598
           L QL +Q  DA       E         A +   +    QA +   +  +   +  ++  
Sbjct: 138 LSQLPQQQNDARRQLNDIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197

Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +++A++ ++   +++  L + L  +  Q++ +  +EA
Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237


>gi|152991067|ref|YP_001356789.1| hypothetical protein NIS_1324 [Nitratiruptor sp. SB155-2]
 gi|151422928|dbj|BAF70432.1| hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 95

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 47  DEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV 103
           DE+TPS       G+   F     GD ++ +    G    E+ + +A+  G+ +   
Sbjct: 40  DERTPSASIARD-GYIKDFGSGWGGDIVALIHEHRGEPLPEATKWVASCLGIRIDDE 95


>gi|300793826|ref|NP_001179866.1| serine/threonine-protein kinase MRCK alpha [Bos taurus]
          Length = 1719

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 50/124 (40%), Gaps = 15/124 (12%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQ 579
                        +    L  +   E +++L +QVR++       E       ++   ++
Sbjct: 472 LQYSTADGPLTASK---DLEIKSLKEEIEKLRKQVRESSHLEQQLEEANSVRQELDDAFR 528

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQ 630
           Q  A  K+ + L +++EE+ K++ Q + + + +   +          +    E++ ++ +
Sbjct: 529 QIKAYEKQIKTLQQEREELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTE 588

Query: 631 IESQ 634
           + +Q
Sbjct: 589 LHTQ 592


>gi|20094127|ref|NP_613974.1| SMC1-family ATPase [Methanopyrus kandleri AV19]
 gi|49036452|sp|Q8TXI4|RAD50_METKA RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|19887131|gb|AAM01904.1| SMC1-family ATPase involved in DNA repair [Methanopyrus kandleri
           AV19]
          Length = 876

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 73/224 (32%), Gaps = 19/224 (8%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           +RL+   +    +            +  ++   ++R +Q         ++    EA L  
Sbjct: 240 ERLEGELRLLENKIESLKGRRDDLRKLVEEGKEAERELQRLGDVPSKVRELENEEAELRR 299

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL-------- 541
            +     +L +       +     EL+ +   L  +  ++    PE + +          
Sbjct: 300 RIEELRNLLDDLRSLRNRLESAEEELEGVKREL-EELKDEAGVDPERLVEFKDKIVEASE 358

Query: 542 ------CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                  E      L+++  ++ + G    T ++   ++++   +     K  R+  ++ 
Sbjct: 359 RLRDLRREEELKRKLEKVSDELSELGDREETLQSEYEELQERLDEIQGELKEIRVKEKEL 418

Query: 596 EEIEKQIAQVTAK----GEAEKTAILISILHEVHIQIHQIESQE 635
            E  + + +   +               +L +   ++ +++ +E
Sbjct: 419 LERIESLREAEGECPVCLRKLPRERAEKLLRDAEKELERLQGRE 462



 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 11/149 (7%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--EIHQRLCE-RGFGELLKQLD 554
           L+   + + D++    EL+++   L     E K   PE  E+ +RL E R      ++L+
Sbjct: 184 LETFRERVRDLKGSKKELKRVERELEELKREVKELEPEVEELKERLNELREAKREFERLE 243

Query: 555 RQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            ++R       + +    D+R+     ++A    +R   +  +  E+E + A++      
Sbjct: 244 GELRLLENKIESLKGRRDDLRKLVEEGKEAERELQRLGDVPSKVRELENEEAELRR---- 299

Query: 612 EKTAILISILHEVHIQIHQIESQEAMIEG 640
            +   L ++L ++    +++ES E  +EG
Sbjct: 300 -RIEELRNLLDDLRSLRNRLESAEEELEG 327



 Score = 38.3 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 62/208 (29%), Gaps = 6/208 (2%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            RL  +  K     +      ++    R+     + L        +  +        L  
Sbjct: 278 QRLGDVPSKVRELENEEAELRRRIEELRNLLDDLRSLRNRLESAEEELEGVKRELEELKD 337

Query: 490 TLINHPAILQEQYQELADIRYDNNELQK---LWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
                P  L E   ++ +      +L++   L   L     E       E   +      
Sbjct: 338 EAGVDPERLVEFKDKIVEASERLRDLRREEELKRKLEKVSDELSELGDREETLQSEYEEL 397

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            E L ++  ++++  +        I  +R+   +     ++   L R++ E   + A+  
Sbjct: 398 QERLDEIQGELKEIRVKEKELLERIESLREAEGECPVCLRK---LPRERAEKLLRDAEKE 454

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
            +    +   L     E+  ++  +  +
Sbjct: 455 LERLQGREEDLRKERRELKDRLESVRRE 482


>gi|326515338|dbj|BAK03582.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 856

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 4/131 (3%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + I   +          +   + R   +    
Sbjct: 393 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALEREKDK-ASKARLVDVRKEL 451

Query: 567 TEANI--VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHE 623
            +       ++  Y++        R L +++EE++  + +   + +  + A L    L E
Sbjct: 452 EDLRDKLQPLQMKYRKEKERIDEIRSLKQRREELQFTLQEAERRMDLARVADLRYGALQE 511

Query: 624 VHIQIHQIESQ 634
           V   I ++E +
Sbjct: 512 VDAAIARLEGE 522


>gi|302841769|ref|XP_002952429.1| hypothetical protein VOLCADRAFT_93025 [Volvox carteri f.
           nagariensis]
 gi|300262365|gb|EFJ46572.1| hypothetical protein VOLCADRAFT_93025 [Volvox carteri f.
           nagariensis]
          Length = 819

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 533 LPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANI-VDVRQGYQQALALYKRFR 589
             E I Q+L E G  + E +K L+         +     ++  +  +  + A AL +R  
Sbjct: 603 ERELIMQQLVETGCKYQEQIKSLEALSGRHQAEADKYRRDLHAEAERHSEAAAALRERLG 662

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +   E+  ++ +  A+   +K    ++ L +V  ++ + ++ EA
Sbjct: 663 KWEQDATELTNRLREAAAQN--QKLQQELARLQDVKQRLER-DTSEA 706


>gi|170026068|ref|YP_001722573.1| replicative DNA helicase [Yersinia pseudotuberculosis YPIII]
 gi|186893732|ref|YP_001870844.1| replicative DNA helicase [Yersinia pseudotuberculosis PB1/+]
 gi|169752602|gb|ACA70120.1| replicative DNA helicase [Yersinia pseudotuberculosis YPIII]
 gi|186696758|gb|ACC87387.1| replicative DNA helicase [Yersinia pseudotuberculosis PB1/+]
          Length = 451

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 41/124 (33%), Gaps = 3/124 (2%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           KL       E ++L  L+          + +A   + +   +++++ +       K    
Sbjct: 5   KLPPHSLEAEQSVLGGLMLDNERWDNVSERVASKDFFSRPHRRIFTEMQRLLENSKPIDL 64

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L ++G    L  +      A L   T  A  +       +  A+ +    ++ +
Sbjct: 65  ITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAYADIVRERAVVREMISVANE 121

Query: 595 KEEI 598
             + 
Sbjct: 122 IADA 125


>gi|158299982|ref|XP_319987.4| AGAP009210-PA [Anopheles gambiae str. PEST]
 gi|157013781|gb|EAA43417.4| AGAP009210-PA [Anopheles gambiae str. PEST]
          Length = 1710

 Score = 45.6 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 62/209 (29%), Gaps = 6/209 (2%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           +  +  +L  +            K        +   ++               +  E   
Sbjct: 702 LAAKQDELSNQAKQLQELEAEKVKVQQELSSLQQKFEQSRTEHEQLIAEVHALADAERNT 761

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERG 545
           +  L     +   + + LA  +    E + L S L ++  E        ++Q L   +  
Sbjct: 762 IAEL--RKQLQTSEQENLAKDK-QLEENEVLVSALQNELKELN-VSKASLNQELTAIKAS 817

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
           F +    L   +++        E +  ++    +Q     +      R++ E+    AQ 
Sbjct: 818 FADKDGTLANILQEKTALEKQLEESKQELASKVKQLEEDLRNREDTLRKELELSASTAQQ 877

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQ 634
               + E+   L     E+  Q+   + Q
Sbjct: 878 QLSAKEEELTRLSQAREELQKQLETAQQQ 906



 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/287 (9%), Positives = 86/287 (29%), Gaps = 30/287 (10%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                    + A   + +E         +++          +  E        +  ++D  
Sbjct: 1124 QDLTVQIDQKAQRIVELEQELDEQRTLQQKRSAEVAEMVAKLEENGKSYAEMLQQLQDSY 1183

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             +    +  +   ++  Q+           + +    +      +  ++  L + +   +
Sbjct: 1184 TQIEALKKAKSESEEACQQVQQRLQDLNSSYSEMEEEQVDLVSREETLRKELAQLQEQMQ 1243

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNN-------ELQKLWSFLFSDFVEQKYF 532
             +  E         + A++ +  + L  +   ++       EL  L   L +        
Sbjct: 1244 QAAGEQK-----ERYDAVVSKNEELLKQLESTSSAKGATETELIALRQELATKSTSLGEL 1298

Query: 533  LP--EEIHQRLCERG-FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                EE++ +L  +    + +K L++ V             + D          L ++  
Sbjct: 1299 HAKVEELNAQLQTKATLEQQVKSLEQSVSAKDASILELSGKVED----------LQRQTT 1348

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                +  E E+++ Q+     ++ T      L ++  Q+  ++   A
Sbjct: 1349 SSDAKIVEKEEELKQLQTASASKDTQ-----LKDLQQQLEAMQKTLA 1390



 Score = 38.3 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 70/228 (30%), Gaps = 11/228 (4%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +      +++ + +Q L +K                   +        ++  + +    
Sbjct: 496 PEEINELKRSLENEIQNLHEKVADAERAAASKLSALTISEECLKEQINYLEHRVDEQSDQ 555

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF------LFSDFVEQKY 531
                 E       + +     EQ + LA ++ +    + L +       L    VE+  
Sbjct: 556 LTVKDAELEKQYLALKNAE--SEQEERLAALQDELRSKKDLLAERDQQVQLLEQTVEELR 613

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                +     +      L    + ++      +  E    +V      + A  K     
Sbjct: 614 ADVALVEVNASKTHLERDLTNATQTIKVLEEDRSVKEKAAQEVESKLTASEAALKAEIAA 673

Query: 592 SRQKEEIEKQIAQV--TAKGEAEKTAILISILH-EVHIQIHQIESQEA 636
            +++E + +++ +   +     E +A L++    E+  Q  Q++  EA
Sbjct: 674 RQEQESLAQKLQRDLQSLATSGESSAALLAAKQDELSNQAKQLQELEA 721


>gi|319901560|ref|YP_004161288.1| ATP-dependent chaperone ClpB [Bacteroides helcogenes P 36-108]
 gi|319416591|gb|ADV43702.1| ATP-dependent chaperone ClpB [Bacteroides helcogenes P 36-108]
          Length = 864

 Score = 45.6 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 71/212 (33%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++    +      +  +++    + +      +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVMVNEPDTLSTISILRGLKERYENHHHVRIKDDAIIAAVELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      +     +          +L  
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDKLKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           +     L     + N    +  +Q    L  + +    + E ++ +  +   +G+  K  
Sbjct: 437 EQIGKELAELKEQENSYKAK--WQSEKTLVNKIQQNKIEIENLKFEADKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L   + +   ++H+++  +AMI+
Sbjct: 495 EIRYGKLQALNKEIEDTQQKLHEMQGDKAMIK 526



 Score = 41.0 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 70/264 (26%), Gaps = 34/264 (12%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + +  +DM              +    +   +K     I        
Sbjct: 220 RILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERLKAVINEVKKSEGDI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E    + ++N P  L                   +   L   +    +        R+ +
Sbjct: 328 ERRFQIVMVNEPDTLSTI---------------SILRGLKERYENHHHV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + D  L     +       +   +  ++ +    +SR+ +++E +  
Sbjct: 366 DAIIAAVELSNRYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIERE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQ 627
            +  + +  K   +   L E+  Q
Sbjct: 426 AIKRENDKLKLEQIGKELAELKEQ 449


>gi|302828474|ref|XP_002945804.1| hypothetical protein VOLCADRAFT_86130 [Volvox carteri f. nagariensis]
 gi|300268619|gb|EFJ52799.1| hypothetical protein VOLCADRAFT_86130 [Volvox carteri f. nagariensis]
          Length = 2493

 Score = 45.6 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 81/246 (32%), Gaps = 29/246 (11%)

Query: 418  QKLRYYYSQAIRDR----------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
              +R  Y + + +           ++ L ++ + E   + R   ++    +++   +   
Sbjct: 1077 ADVRAEYERQLAEARTVHQKQLLDVRALAERQVEEARAHHRKQMEDVHVHNERKLDEVRR 1136

Query: 468  QSSLVKGKLSKKPSLREAALLLTLINHPAILQE--------QYQELADIRYDNNELQKLW 519
            +   ++ +  +  + +E  L+        +L++                +    + + L 
Sbjct: 1137 R---MERQAEEARAAQERVLVEARAQRDKVLEDARLAQTKALEDARGQQQRALEDTRALH 1193

Query: 520  SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
              + +D          E+   L E         + R V D    +        + R+  +
Sbjct: 1194 ERVLADTQAVHVKQVVELKN-LYESELRRAAHDVGRAVDDTRRVAEEARRQEAEARRAKE 1252

Query: 580  QALALYKRFRLLSRQKE-------EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +A+AL  R   L  +         E E +  Q+  + + E      + + E  +   ++E
Sbjct: 1253 EAVALRDRILGLEAELRARDGALREAETRFVQLDTRSKTELAETQANAIKEAALMKLEME 1312

Query: 633  SQEAMI 638
              +A +
Sbjct: 1313 DAKAAL 1318


>gi|147807315|emb|CAN77537.1| hypothetical protein VITISV_030459 [Vitis vinifera]
          Length = 313

 Score = 45.6 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 52/131 (39%), Gaps = 5/131 (3%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              EL+ +   + +    +      ++     ER    L + +D     A   +AT    
Sbjct: 150 SEPELELIILRVINKSEAEGDMST-DLRVGFKERHRKRLHEAIDMTDLTAAQKAATEGTE 208

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQI 628
            + + +G ++A+    +   L ++   +E +I +V  +     ++   L +    +  ++
Sbjct: 209 TLKLAEGEREAIRA--KTERLKKEGGVVEAKIKEVEQENSQLKKEMEELWARFATLKKEM 266

Query: 629 HQIESQEAMIE 639
            +++++ A  +
Sbjct: 267 KELQARFATKK 277


>gi|47606682|gb|AAT36324.1| paramyosin isoform 1 [Dictyocaulus viviparus]
          Length = 876

 Score = 45.6 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 90/273 (32%), Gaps = 23/273 (8%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D   +            E+  +       +      +   +R  L+    + +  + DQK
Sbjct: 166 DQVQKDKHIAEKAAERFEAQSIELSNKVEDLNRHVNDLAQQRQRLQAENNDLLKEVHDQK 225

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           ++    Q ++  L Q  ++         R   +      Q       ++++L +   ++ 
Sbjct: 226 VQLDNLQHVKYTLAQQLEEARRRLEDAERERSQLQSQLHQVQLELDSVRTALDEESAARS 285

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +          + +  I Q + +  A++   + E++ L   +     E           
Sbjct: 286 DAEH-----KLNLANTEITQWKSKFDAEVALHHEEVEDLRKKMLQKQAEY---------- 330

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              E     +L+++ +  +      +  E  IVD+ +       L +    L +Q  E++
Sbjct: 331 ---EEQIEIMLQKISQLEKAKSRLQSEVEVLIVDLEKAQNTIAILERAKEQLEKQCAELK 387

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +I ++  +            L  V+ ++ +++
Sbjct: 388 VRIDELNVE-----LEAAQRELRAVNAELQKMK 415


>gi|311269150|ref|XP_003132365.1| PREDICTED: TATA element modulatory factor-like [Sus scrofa]
          Length = 1052

 Score = 45.6 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 63/175 (36%), Gaps = 7/175 (4%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +   Q      KL+     +E  L    ++   + ++     A +     EL  L  
Sbjct: 613 GKEEVEKQHRDNIKKLNSVVERQEKDLGRLQLDMNELEEKNRSIQAALDSAYKELTDLHK 672

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +  +        + + +  +   EL   L++   +A     T    + D+R   Q+
Sbjct: 673 A---NAAKDSEAQEAALSREMRAK--EELSAALEKAQEEARQQQETLAIQVGDLRLALQR 727

Query: 581 AL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           A  A  ++   L  +  E+++++ +   +   E +  + S    +  QI  +++ 
Sbjct: 728 AEQAAARKEDYLRHEISELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 781


>gi|194673227|ref|XP_001790689.1| PREDICTED: hypothetical protein [Bos taurus]
 gi|297482730|ref|XP_002693047.1| PREDICTED: hypothetical protein [Bos taurus]
 gi|296480296|gb|DAA22411.1| hypothetical protein BOS_14398 [Bos taurus]
          Length = 1447

 Score = 45.6 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 108/338 (31%), Gaps = 25/338 (7%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D D            L              L  R       +R   + + ++        
Sbjct: 679  DEDQIRAEQEASLQRLREELESLQKAERASLEERSRQTLEQLREEMEASEKREQAALKVE 738

Query: 382  VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY--YSQAIRDRLQQLFQKY 439
             +   ++  E       +  A LE   +  +  +       +     +++ ++Q+  QK 
Sbjct: 739  KERALQQLREQLEGERREAAAALEREHREELERLSSSLEAKHREVVSSLQKKMQEAHQKE 798

Query: 440  ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
              +        ++ A HR  +        S L++ K  +     E  +      H  ++ 
Sbjct: 799  EAQLQESLGRAEQRAHHRVYQVLEYEQELSGLLREKRQEVEREHERKMDRMKEEHQQVVA 858

Query: 500  E------------QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG-- 545
            E            + + L  +  +   L++          +++    E++ +R  E+   
Sbjct: 859  EARQQYEAEERKQRAELLGHLTGELERLRRAHERELESVRQEQDRQLEDLRRRHREQERK 918

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-------KEEI 598
              +L  +L+ + +D     A  +      R+  QQ L + ++  L S +        EE 
Sbjct: 919  LQDLEVELETRTKDVKARLAQLDVQKEAARKEKQQLLDVQRQVVLESEEATATHQHLEEA 978

Query: 599  EKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634
            +K+   +    +  +     L +   E+  Q+  +++Q
Sbjct: 979  KKEHTHLLESNQQLRRILEELQARKLELESQVELLQAQ 1016



 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 40/108 (37%), Gaps = 9/108 (8%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD------VRQGYQQA 581
           E +   P  + ++L E       + + R++         ++   +        R+   +A
Sbjct: 569 EVRSAEPAALREQLSEAALEATDEAVTRELEQEQTRLLESKQEKMQRLREKLCREEEAEA 628

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           L L+++     +    +++Q+ + T + E +        L  +  Q+ 
Sbjct: 629 LQLHQQK---EKALSSLKEQLQRATEEEETQMREQERQRLSRLRAQVQ 673



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 83/221 (37%), Gaps = 18/221 (8%)

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--------G 474
             Y Q +   L++  Q+   EH       K+  +    +   Q   +    +        G
Sbjct: 822  EYEQELSGLLREKRQEVEREHERKMDRMKEEHQQVVAEARQQYEAEERKQRAELLGHLTG 881

Query: 475  KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            +L +     E  L        ++ QEQ ++L D+R  + E ++    L  +   +   + 
Sbjct: 882  ELERLRRAHEREL-------ESVRQEQDRQLEDLRRRHREQERKLQDLEVELETRTKDVK 934

Query: 535  EEIHQ-RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + Q  + +    +  +QL    R   L S    A    + +  ++   L +  + L R
Sbjct: 935  ARLAQLDVQKEAARKEKQQLLDVQRQVVLESEEATATHQHLEEAKKEHTHLLESNQQLRR 994

Query: 594  QKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIE 632
              EE++ +  ++ ++ E    ++  L   + ++ +Q  + +
Sbjct: 995  ILEELQARKLELESQVELLQAQSQRLQKHVSDLEVQAQKKQ 1035



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 100/289 (34%), Gaps = 26/289 (8%)

Query: 360 DSFIRCYGKTAFE--KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           +   R     A +  +   ++L  +    +R TE       ++  +    L+  +    +
Sbjct: 618 EKLCREEEAEALQLHQQKEKALSSLKEQLQRATEEEETQMREQERQRLSRLRAQVQSSSE 677

Query: 418 Q------KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
                    +    Q +R+ L+ L +          R   +  + R++   S++  Q++L
Sbjct: 678 ADEDQIRAEQEASLQRLREELESLQKAERASLEERSRQTLE--QLREEMEASEKREQAAL 735

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
              K      LRE            +  E+ +  A +  ++ E  +  S        +  
Sbjct: 736 KVEKERALQQLRE-----------QLEGERREAAAALEREHREELERLSSSLEAKHREVV 784

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL- 590
              ++  Q   ++   +L + L R  + A            ++    ++     +R    
Sbjct: 785 SSLQKKMQEAHQKEEAQLQESLGRAEQRAHHRVYQVLEYEQELSGLLREKRQEVEREHER 844

Query: 591 -LSRQKEEIEKQIAQVTAKGEAEKT---AILISILHEVHIQIHQIESQE 635
            + R KEE ++ +A+   + EAE+    A L+  L     ++ +   +E
Sbjct: 845 KMDRMKEEHQQVVAEARQQYEAEERKQRAELLGHLTGELERLRRAHERE 893


>gi|309390181|gb|ADO78061.1| uncharacterized protein with myosin-like domain [Halanaerobium
           praevalens DSM 2228]
          Length = 427

 Score = 45.6 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIV 572
             +L + LF+          E ++Q+L   ++      ++L+ + +      A  EA   
Sbjct: 70  YSELRNALFNI--NDVLNRLENLNQQLEKRDQNLAAKNEELEARDQKLAELQAQIEARED 127

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQ 630
            +     +        +   ++   +EK++A++T   +   ++   L S   ++  Q+ +
Sbjct: 128 KIAAKEAEIETKEAEIKAKDQELLAVEKELAELTKNRDQLEQRIENLSSQRQDLEEQVSE 187

Query: 631 IESQEAMIE 639
           +++Q + +E
Sbjct: 188 LQAQISDLE 196


>gi|331219126|ref|XP_003322240.1| hypothetical protein PGTG_03777 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309301230|gb|EFP77821.1| hypothetical protein PGTG_03777 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1513

 Score = 45.6 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 89/265 (33%), Gaps = 4/265 (1%)

Query: 373  KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
            + +       +   ++     S    +  + L    +      +++K R   S    D  
Sbjct: 1155 EKLESEKATQEQEIEQLQNRLSEARDEVESLLSKSQEQQERLQENEKEREALSDDKEDLE 1214

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
             QL    +  H    +  +            + L          S K    +  +     
Sbjct: 1215 DQLEAANLKLHETEAQLSQVTEARDSMDAEIRALHTQKKESSASSAKIEQLQETISKLET 1274

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
             +    ++     A++R    EL++    + +              + L    FG+L  +
Sbjct: 1275 ENAEYAEQHSSLTAEVRQLKTELERKAHTIINSEKSYHRVQATLEKRTL---DFGQLEDE 1331

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEA 611
            L+R+  +    + T    + D +   ++ + +    + L    ++++ Q+  Q +A   +
Sbjct: 1332 LERKTNEIMGLNETNNNLLKDTKALRKELIKVKAEAQDLGHHLQDLKDQVDRQASAPNNS 1391

Query: 612  EKTAILISILHEVHIQIHQIESQEA 636
            ++   L + L     ++++++SQ A
Sbjct: 1392 KEMTKLKNELSLCKKELNELKSQRA 1416



 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 22/225 (9%), Positives = 77/225 (34%), Gaps = 21/225 (9%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
               ++ +++QL  +    +        K +   +          ++  +    ++ + + 
Sbjct: 995  IHELQQQVEQLRHQLDLANKNVDHKLAKLSEVSENVVKVSTEAITARRRADDFEEKAQKL 1054

Query: 485  AALLLTLINHPAILQEQYQELADIRYDN-----NELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               L  LI     + +    L++I   +     +  Q +   +             E  +
Sbjct: 1055 EERLDKLIAEDGTIAQVKHRLSNIGCPDCGERFDANQIVRFRVL------PETQELEFTE 1108

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL----SRQK 595
            +  E    +    L  +  +      T++  I+ +++     L   ++         ++ 
Sbjct: 1109 QPTENDTEDHSSGLKVKFMELEANHQTSQTEIIKLKRELDLKLDELEKLESEKATQEQEI 1168

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ-EAMIE 639
            E+++ ++++       ++   L+S   E   ++ + E + EA+ +
Sbjct: 1169 EQLQNRLSEAR-----DEVESLLSKSQEQQERLQENEKEREALSD 1208


>gi|240117591|ref|ZP_04731653.1| replicative DNA helicase [Neisseria gonorrhoeae PID1]
 gi|268603295|ref|ZP_06137462.1| replicative DNA helicase [Neisseria gonorrhoeae PID1]
 gi|268587426|gb|EEZ52102.1| replicative DNA helicase [Neisseria gonorrhoeae PID1]
          Length = 468

 Score = 45.6 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520
            +       +    L       E ++L   ++ +PA        ++   +  +E + ++ 
Sbjct: 5   AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +     E +      + + L         ++L+       L +           + Y +
Sbjct: 64  SITKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    R R + RQ  E+  +IA+     +      L+        QI   ES     +G
Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171

Query: 641 F 641
           F
Sbjct: 172 F 172


>gi|309361022|emb|CAP30427.2| hypothetical protein CBG_11240 [Caenorhabditis briggsae AF16]
          Length = 1069

 Score = 45.6 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 41/111 (36%), Gaps = 5/111 (4%)

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
             P ++   +      ++L +  R   +           +    +   + L+L  +  + 
Sbjct: 477 VQPNDMISLMQSTFEQQILAERQRLAEEHNRRMQEEAEKMAKFHEAMYRQLSL--QQEMS 534

Query: 592 SRQKEEIEKQIAQVTAK---GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +Q  E E  + +   +    +AE     ++   ++ ++  ++E + A IE
Sbjct: 535 QQQIREQELALQRHREELEKRDAELKREALARQQQIEMEAREVEQRRAAIE 585


>gi|268594503|ref|ZP_06128670.1| replicative DNA helicase [Neisseria gonorrhoeae 35/02]
 gi|268600983|ref|ZP_06135150.1| replicative DNA helicase [Neisseria gonorrhoeae PID18]
 gi|268547892|gb|EEZ43310.1| replicative DNA helicase [Neisseria gonorrhoeae 35/02]
 gi|268585114|gb|EEZ49790.1| replicative DNA helicase [Neisseria gonorrhoeae PID18]
 gi|317163921|gb|ADV07462.1| replicative DNA helicase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 468

 Score = 45.6 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520
            +       +    L       E ++L   ++ +PA        ++   +  +E + ++ 
Sbjct: 5   AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +     E +      + + L         ++L+       L +           + Y +
Sbjct: 64  SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    R R + RQ  E+  +IA+     +      L+        QI   ES     +G
Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171

Query: 641 F 641
           F
Sbjct: 172 F 172


>gi|269127279|ref|YP_003300649.1| hypothetical protein Tcur_3069 [Thermomonospora curvata DSM 43183]
 gi|268312237|gb|ACY98611.1| protein of unknown function DUF901 [Thermomonospora curvata DSM
           43183]
          Length = 484

 Score = 45.6 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 78/237 (32%), Gaps = 19/237 (8%)

Query: 418 QKLRYYYSQAIRDRLQQL-FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           + +R    +A  + L  L  ++       + R+ +++   R  +  +  L Q  + + K 
Sbjct: 58  EAVRQRVVEAAAELLGTLATEEIPASLRPFARWERRHRAKRAGRHIAPVLEQDPVFREKA 117

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS-----DFVEQKY 531
           +      E          P +++            +       ++L         VE   
Sbjct: 118 AGPLRAAE----------PELVEAVASGTVPPA-ADPVTVAAVAYLLRPPGWPRLVETAR 166

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGL-WSATTEANIVDVRQGYQQALALYKRFRL 590
              E       +  +   +  L R++ +A    +   E    ++R+   +   L ++   
Sbjct: 167 RELERSASAAEDAAYERRIAALQRELAEARAGRAGELERLRAELRKAKAEISELRRKLHE 226

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
                +   ++   + A+ E ++ A   +       ++ ++ S+ A  E   + S R
Sbjct: 227 ERAAVKAARQRAESLAAELEQQRAAAREAGAAA-DKELRRLRSKLAQAEAAHESSRR 282


>gi|237650782|ref|ZP_04525034.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae CCRI
           1974]
          Length = 633

 Score = 45.6 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 60/160 (37%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSALYLGDYDYYIEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q++    +     A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KVEVEM-SQIEEASTNNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|227499903|ref|ZP_03929996.1| replicative DNA helicase DnaB [Anaerococcus tetradius ATCC 35098]
 gi|227218012|gb|EEI83285.1| replicative DNA helicase DnaB [Anaerococcus tetradius ATCC 35098]
          Length = 443

 Score = 45.6 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/169 (8%), Positives = 54/169 (31%), Gaps = 19/169 (11%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +      L E  ++ +++          Q +  + + ++  Q+++  +   F +      
Sbjct: 6   RPLPNDFLAEQGIIGSILAKNETFDSVNQIIKPVDFYDSRTQRIYKSIIKMFEKDIKVDE 65

Query: 535 EEIHQRLCER------GFGELLKQL-------------DRQVRDAGLWSATTEANIVDVR 575
             +  +L +       G  E + ++              + V++  +  +   A+   + 
Sbjct: 66  ISLISQLKDENILQEVGGEEFITEITLSSFYTPNVDTYAKSVKEKSILRSLIGASEDIID 125

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             Y+    +         +  E+ +          +E     + +++E+
Sbjct: 126 LSYRHEEKIESILSTAESKIFEVSQDNHNKGLVRLSETMEETLQMINEL 174


>gi|193062737|ref|ZP_03043831.1| phage tail tape measure protein, lambda family [Escherichia coli
           E22]
 gi|192931859|gb|EDV84459.1| phage tail tape measure protein, lambda family [Escherichia coli
           E22]
          Length = 1069

 Score = 45.6 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 5/122 (4%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L + L +   +Q          ++    F    +++    R+    +           + 
Sbjct: 146 LAAALRNLDQQQDELNAALFSGKINGSQFDNYSRKIQETRRELTGEAQAEREAAKAHDEQ 205

Query: 578 YQQALALYKRFRLLS---RQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIE 632
                 L  +   +     +  E +KQ+++  AKG    E    L   LH +  ++   +
Sbjct: 206 VAALQRLIAQLDPVGTAFNRLTEQQKQLSEAKAKGMLSPEMYEELSGKLHAMRSELEATQ 265

Query: 633 SQ 634
           SQ
Sbjct: 266 SQ 267


>gi|332259365|ref|XP_003278758.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD1-like
           [Nomascus leucogenys]
          Length = 1272

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 33/317 (10%), Positives = 93/317 (29%), Gaps = 36/317 (11%)

Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEK---LIVESLPLVDMLWKRETENRSFNTPDE 400
                  V    G D  +    Y +  +++   L   +  +       + E         
Sbjct: 90  NNFICQRVEGGFGLDISTSAPGYLQMQYQQSMQLEERAEQIRSKSHLIQVEREKMQMELS 149

Query: 401 RAELEIHLKNCINHIKDQKLRYYYS-QAIRDRLQQLFQKYITEHSGYGRYWKKNAR---- 455
                + L+   +       R     Q +  R++QL ++            ++N +    
Sbjct: 150 HKRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQN 209

Query: 456 ----HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
                +  +     L Q+      L  + S  + +++   +    +  E+ +    +   
Sbjct: 210 LDAASKRLREKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQ 269

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
           + + Q+    +      Q+                 + +K L++++              
Sbjct: 270 HKKCQEANQKIQELQASQEA-----------RADHEQQIKDLEQKLSL-----------Q 307

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                  +   +   R   L R+ +++ ++ A++    E      L   L  +  ++ + 
Sbjct: 308 EQDAAIVKNMKSELVRLPRLERELKQLREESARLREMRETNGL--LQEELEGLQRKLGRQ 365

Query: 632 ESQEAMIEGFGKMSGRL 648
           E  +  + G    + RL
Sbjct: 366 EKMQETLVGLELENERL 382



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 89/278 (32%), Gaps = 22/278 (7%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             ++L  ES  L +M                +   +  ++  +  ++ +  R        
Sbjct: 330 ELKQLREESARLREMRETNGLLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKLQSW 389

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           +RL Q     I       R+  +  +           + SS    +  +     E   + 
Sbjct: 390 ERLDQTTGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSSRGLEQGRHQLQEEVNSVS 449

Query: 490 TLINHPAIL--QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
             IN       +E  + L+         Q++ + L     +    +       L    + 
Sbjct: 450 GCINRSRRFTGKEVARRLS---------QRVLTVLLER--DGMRAILGSYDSELTPAEYS 498

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY----KRFRLLSRQKEEIEKQIA 603
               QL R++R+A        ++  ++     QAL       +R  +L  + + ++ Q +
Sbjct: 499 P---QLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSS 555

Query: 604 QVTAK--GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                     E+   L   + E+  +  Q+E ++ M+E
Sbjct: 556 SAEQSCLFSREEVDTLRLKVEELEGERSQLEEEKRMLE 593


>gi|269928504|ref|YP_003320825.1| hypothetical protein Sthe_2589 [Sphaerobacter thermophilus DSM
           20745]
 gi|269787861|gb|ACZ40003.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 1164

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 77/242 (31%), Gaps = 32/242 (13%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQ------LFQKYITEHSGYGRYWKKNARHRDQKGPS 463
                + D   R  Y  ++ D L++      L +  + E +G     +  A    +  P 
Sbjct: 103 PLRVAVPDDH-RDRYLLSLHDLLREEDAGGPLAEVIVRESAGGYDVPRAIATLGYRASPP 161

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           +      +V+   + + ++R             + +E Y+ L       +EL++      
Sbjct: 162 RGGRPPEVVERVRAAQQAVR-------------VTREGYEHLRREEARLDELRERAQRAM 208

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               ++   L + +      R   E  ++L              +  +  +      A  
Sbjct: 209 EAR-DRAALLEQALAYAAARRTLDEARERLATFPEVLARLHGDEDQRLERIEANLTSA-- 265

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEA------EKTAILISILHEVHIQIHQIES--QE 635
             +R     +  +  E    +    G        E+   L + L ++  +I + E+  QE
Sbjct: 266 -RQRRTEAEQALQRAEADARETGLMGHELPPGFIERLRGLYAELQDLASEIRRAEAAYQE 324

Query: 636 AM 637
           A+
Sbjct: 325 AL 326



 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 67/225 (29%), Gaps = 26/225 (11%)

Query: 412 INHIKDQKLRYYYSQAIRD-RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
                D+ +    ++ +   R +    +   E     R+    A            + + 
Sbjct: 566 WQRANDEVVTQESARDLARTRFRDALARLNGEFE---RFGYSEAVDLPSAAGYLEDLAAR 622

Query: 471 LVKGKLSKKPSLREAALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLF---SDF 526
           + + + +   + R    L    +  A +  E+   L  +    ++ + L+ +L       
Sbjct: 623 VERLRQATDQAARARQALEDASHEIARLEDERRALLEPLGLSEDDPRALYEWLRVLDDYR 682

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
              +     E    +      E    L              +A    +RQ   +   L  
Sbjct: 683 NAVRAVTDAEAVVSVSASALAEHPDLL--------------DATAEALRQELHEQQLLAA 728

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL----ISILHEVHIQ 627
               ++R+   IE++I++   + + E+        ++ L     +
Sbjct: 729 ELESITREIGGIERRISEARRQQDLERALAEQDDAMAALRAARER 773


>gi|224052372|ref|XP_002192279.1| PREDICTED: discs, large homolog 5 (Drosophila) [Taeniopygia
           guttata]
          Length = 1891

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/265 (9%), Positives = 84/265 (31%), Gaps = 18/265 (6%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           +           +    +  + + +   + +      ++    + +   +    Q   +R
Sbjct: 290 QAEEENRRLQKQIDMLMKQRDTAIHFQQQYSSSLRRFESVQQELSNATAQNKELQREMER 349

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           LQ    ++ T      +  +K    RD      RL+ S   +          E  L  + 
Sbjct: 350 LQSEVTRFKTMQLKATKDAEKYKEERDSVFNEYRLIMSERDQVIKEVDKLQTELELAESK 409

Query: 492 INH----PAILQEQYQEL--------ADIRYDNNELQKL---WSFLFSDFVEQ-KYFLPE 535
           + +      +  E+ + L         DI   N E++ L   +  +  +  E  +     
Sbjct: 410 LKNTSSEKRVASEEMEALRQIQDSATLDIERANKEIEMLRKQYEAMSQELKEAVQEAEVA 469

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +  +    +   +++ + +             +  + D+ +  +    + K+     R+ 
Sbjct: 470 KCRRDWAFQERDKIVAERESIRTLCDNLRRERDRAVSDLAEALRNLDDMRKQKNDAVREL 529

Query: 596 EEIEKQIAQVTAKGEAEKTAILISI 620
           +E+++++       +  +   L++ 
Sbjct: 530 KELKEKME--NQLEKEARFRQLMAH 552


>gi|91070436|gb|ABE11347.1| DnaB replicative helicase [uncultured Prochlorococcus marinus clone
           HOT0M-10E12]
          Length = 460

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 60/194 (30%), Gaps = 28/194 (14%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
             + +  + +   +S   G +  +    E A+L  ++  P  +      +    +  N  
Sbjct: 7   PNNGQNKNFKKDFNSENSGLVPPQNVQAEEAILGGILLDPDAIGRIADLIKPEAFYINAH 66

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           Q+++        + K      +   L +       + L++   ++ L       +     
Sbjct: 67  QEIYRTALMLHTQGKPTDLTSMSAWLADN------RSLEKIGGNSKLVELVENVSSTASI 120

Query: 576 QGYQQALALYKRFRLLSRQ------------------KEEIEKQI----AQVTAKGEAEK 613
           +     +      R L R                    ++ E++I     +  +KG  + 
Sbjct: 121 EQVANLINDKFMRRQLIRSGNEVVQLGFDQTLDTNEVLDKAEQKIFEISQEKPSKGLTQA 180

Query: 614 TAILISILHEVHIQ 627
             IL S  +E+  +
Sbjct: 181 AEILTSTFNEIESR 194


>gi|46579372|ref|YP_010180.1| replicative DNA helicase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448786|gb|AAS95439.1| replicative DNA helicase [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 493

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 55/219 (25%), Gaps = 21/219 (9%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           L Q   K               A        +     + L++          E A+L  +
Sbjct: 3   LNQPRPKSRKPQQNNYSSETTPAYGGGGADGAAERASAELLRRVPPHSIE-AEQAVLGGV 61

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG------ 545
               +IL      L    +     Q L+      + +        + + L   G      
Sbjct: 62  FLKNSILHTLVDTLTAEDFYLPAHQMLFESFLELYRKNAPIDLVSVAEHLKAHGNLEAVG 121

Query: 546 ----FGELLKQLDRQVRDAGLWSATTEANIVDVR-----QGYQQALALYKRFRLLSRQKE 596
                 EL + +          +   + ++                   +    L  + E
Sbjct: 122 GAIYLAELAQAVVSAANAEYYGTIVRDKSLQRSLISACSDIISNCFDASREVGSLLDESE 181

Query: 597 EIEKQIAQVTA----KGEAEKTAILISILHEVHIQIHQI 631
           +    I++ T+    +   E    +   L E  ++  ++
Sbjct: 182 QAVFAISERTSGKVFRSSKELVKKVFEEL-EKRVERKEL 219


>gi|42521686|ref|NP_967066.1| hypothetical protein Bd0038 [Bdellovibrio bacteriovorus HD100]
 gi|39574216|emb|CAE77720.1| dnaB [Bdellovibrio bacteriovorus HD100]
          Length = 471

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 58/173 (33%), Gaps = 12/173 (6%)

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
           +  ++  +    E ++L  L+     L +    L    +     QK++  +     + + 
Sbjct: 1   MSTRIPPQNLDAEQSILGGLMLDREALDQVGDVLMADDFYKPGHQKIYEAIKDLHAKGQP 60

Query: 532 FLPEEIHQRLCERGFGE-------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                +   L  +G  +       L+  LD+ +  A + +           +    ++  
Sbjct: 61  IDIITVTNVLQSQGHMDVAGGPEYLISLLDKTISSANISTHAKIVKDKATLRRLI-SINS 119

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAK----GEAEKTAILISILHEVHIQIHQIES 633
               +   +   ++E  + Q  ++    G+ +    L+  +  V   I +IE 
Sbjct: 120 SLIEKAYDQDFVDVESFVDQAESEIFKIGDTKAKTGLVGSMEIVKASIQKIEE 172


>gi|303231717|ref|ZP_07318440.1| hypothetical protein HMPREF9321_1714 [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513666|gb|EFL55685.1| hypothetical protein HMPREF9321_1714 [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 325

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 49/382 (12%), Positives = 95/382 (24%), Gaps = 86/382 (22%)

Query: 18  SNLIGQYVD--WDRRK-TNAVKGDYWACCPFHDEKTPSFHCNDSKG----FYYCFSCHVK 70
            +++  Y+      +         Y    P H +  PS      +        C SC   
Sbjct: 15  VDIVQTYLPDYLKLKGLVTHEHNKYHCLNPNHTDSHPSMCLYRGRQDGKLRLKCQSCGKV 74

Query: 71  GDHLSFLSALLGC-SFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129
            D  + ++ L     F++    +  +  +      P                   + ++ 
Sbjct: 75  FDLFNVVAHLDHIAHFVDIYYHICNLFQIDPDNPTP-------------------SKYYQ 115

Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL 189
           +      +                          D                      GL 
Sbjct: 116 YQQVKEAEPETVQAYLSL-------SRQNPALTTDKW--------------------GLR 148

Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLY 249
                   +Y    +          G    F  R +    + KY  SP    +   K   
Sbjct: 149 SISKEIVETYQLGFDSKANAYVIPVGS-AGFIQRFI-DNTTPKYKRSPGLKSYFLSK--- 203

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY-QLR 308
                              +++   IL EG +D LSL   G  NV++  G A       +
Sbjct: 204 -----------------SFDNTLPFILTEGEIDALSLLTCGYPNVLALGGIASALDCYEQ 246

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL----LSRGEDPDSFIR 364
                S   +L FD D  G     K   L     IP     +          +D +  + 
Sbjct: 247 HFLTSSLPPILAFDLDQVGQDTYQKVCALAEKLGIPKPIDFWSYLVNVPDNTKDINDLLI 306

Query: 365 CYGKTAFEKLIVESLPLVDMLW 386
            +     ++ + +++  +   +
Sbjct: 307 HH-----QEYLKQAIDTIKEDF 323


>gi|268683995|ref|ZP_06150857.1| replicative DNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268624279|gb|EEZ56679.1| replicative DNA helicase [Neisseria gonorrhoeae SK-92-679]
          Length = 468

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520
            +       +    L       E ++L   ++ +PA        ++   +  +E + ++ 
Sbjct: 5   AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +     E +      + + L         ++L+       L +           + Y +
Sbjct: 64  SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    R R + RQ  E+  +IA+     +      L+        QI   ES     +G
Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171

Query: 641 F 641
           F
Sbjct: 172 F 172


>gi|124024996|ref|YP_001014112.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit
           ClpB [Prochlorococcus marinus str. NATL1A]
 gi|123960064|gb|ABM74847.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit
           ClpB [Prochlorococcus marinus str. NATL1A]
          Length = 931

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +E+K      +   +        L+ ++       L        + +++Q +Q  +   
Sbjct: 470 IIEEKESQVNHLESSIINADKDTTLETINNLQEKKELLLF----ELAEIKQKWQDQIDKS 525

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHEVHIQIHQIE 632
              + L    +E++  I +V   G+ E+   L    L+++  +I +IE
Sbjct: 526 AELQELKISLKELKNLIREVEISGDMEEVEKLKYDQLYQLQERIEEIE 573


>gi|308163439|gb|EFO65775.1| Axoneme-associated protein GASP-180 [Giardia lamblia P15]
          Length = 1641

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 88/288 (30%), Gaps = 13/288 (4%)

Query: 358  DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
            DP+   R      F+  +V+ +  +  L             +  A +   +      +++
Sbjct: 975  DPEEQARVSSILDFDDGLVQKVDELQALVNALAGENDHYKGEH-ARITAEMDALREDLRN 1033

Query: 418  QKLRYYYSQAIRDRL-------QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
             KLR    ++ ++RL         L +    +  G     +  A  ++  G   R+ + +
Sbjct: 1034 GKLRGDSLESDKERLMRQVRDLTDLTESLRKDLGGQQDQGEIAALRQEVAGLRSRVDELT 1093

Query: 471  LVKGKLSKKPSLREAALL--LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                   +     E  L        +   L E   E+   +    E +++   L +    
Sbjct: 1094 DAAKGKDEALEQLEKELAVARASAENTERLSELLDEVEGYKAKLGESKEMVDSLLAQLAS 1153

Query: 529  QKYFLP---EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +   L      +     + G      ++     +         A + +V   ++  +   
Sbjct: 1154 KDAELAGAVAGLRAVADDDGAELARARVASLENEVAELRGQLSARLAEVDAVHRNLVDSD 1213

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                 L  +   +  Q+       + E+  +L   L +   ++ ++ +
Sbjct: 1214 AEAARLREELGGLRVQLEVAQVPEDTERVRMLEDQLQDARKELAELRA 1261



 Score = 43.7 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 82/261 (31%), Gaps = 25/261 (9%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
           + L             +   ++        +  +D   R    + +RDR+Q+  +     
Sbjct: 523 ERLLADAQGGDDERAKELNEQIADLQFELSSAKQDIDEREDEIELLRDRIQEEMKNSAAL 582

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI-----NHPAI 497
                       R  D      R+ +      +LS + +     L             A 
Sbjct: 583 QERVDALEADAVRGADAAEYLARIEELQQQVKELSGRLAEPREELSRLAAPREAPADEAA 642

Query: 498 LQEQYQEL----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
           ++   +++     +I   +N++ +L   +     +     P ++     E G        
Sbjct: 643 VRALEEKIGALNDEIEARDNQIAELRELVDGMPAQPAEADPAQLAALEEENG-------- 694

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
               R  G   A ++A     R    +A  L  +   L+++  ++++ +A   A G+A  
Sbjct: 695 ----RLRGELQALSDALEALRRSSADEARGLRSQVAHLNKEVSDLKEALANARASGDASD 750

Query: 614 TAILISILHEVHIQIHQIESQ 634
                  L E+  Q+   + Q
Sbjct: 751 VE----RLVELQEQLEDAQEQ 767



 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 81/242 (33%), Gaps = 29/242 (11%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              ++D+++ L  +   +        ++        G +  L         L ++   RE
Sbjct: 327 IDGLKDKIRALQSELAEKERDIRALNERLTTVPSPTGDAAILADYENKISALREELEARE 386

Query: 485 AAL--LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           + L  L  ++      +++   L  +   +    ++     +   + + +  + + + + 
Sbjct: 387 SDLSGLRPIVEKTKAFEDELASLRSML--DERDARIAELEQATASQDEAYATQILEEEVE 444

Query: 543 ---------ERGFGELLKQLDR------QVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                    +     L  +L+       +  D     A   + I  ++    +A +  + 
Sbjct: 445 SLRQALLAKDGELEALQSRLEEALARGGEAPDLDAVIAAKNSEIARLQDLVMRAESAQRS 504

Query: 588 FRLLSRQKEEIEKQIAQVTAK------GEAEKTAILISILHEVHIQI----HQIESQEAM 637
                ++  ++E QIA +         G+ E+   L   + ++  ++      I+ +E  
Sbjct: 505 SAEGDKRVAQLEAQIAGLERLLADAQGGDDERAKELNEQIADLQFELSSAKQDIDEREDE 564

Query: 638 IE 639
           IE
Sbjct: 565 IE 566



 Score = 37.9 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 69/256 (26%), Gaps = 17/256 (6%)

Query: 396  NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
            N  +        L+  +  ++D+ LR        D   Q   + + E     R       
Sbjct: 1286 NKLEASEATVRELRESVEALQDE-LRALAGSRAADGDLQKLVEQLEEDLSGARELVSERD 1344

Query: 456  HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI-LQEQYQELADIRYDNNE 514
                +   +          K        E A+L   +      + E  ++L         
Sbjct: 1345 AAIDELKQKLRDTEEYDDLKERIAELDDEIAVLNDSLKDKDAEIAELREQLEAQPTATTV 1404

Query: 515  LQKLWSFLFSDFVEQKYFLP-EEIHQRLCER-----GFGELLKQLDRQVRDAGLWSATTE 568
              +    +      ++       +   L  +          +  L +Q  D        +
Sbjct: 1405 YPESGEEVGDAAALREVQDENAALKDELEAKQSLIDELQGEIDGLKQQCSDLKDEMIKLD 1464

Query: 569  ANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                D     Q +L    K+   L  + E ++     +    +      L   L ++  +
Sbjct: 1465 NANNDKITALQCSLDESRKQIADLQEEIEVLKGTANDI----DPAVVESLQEELRKLQEE 1520

Query: 628  IHQIESQ----EAMIE 639
            +   E+     +A+++
Sbjct: 1521 LDDRENTITELQALLD 1536


>gi|300174923|dbj|BAJ10696.1| hypothetical protein [Streptococcus thermophilus]
          Length = 362

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 22/91 (24%)

Query: 8  IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
          I+ +     I  +              +   +          P HD    SF        
Sbjct: 4  IEAVKQKA-ILEVAES-----------LGYSFKHLSGQVYEHPEHD----SFRIFADTNT 47

Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          +  FS  V+GD + F+  + G SF +++  L
Sbjct: 48 FKWFSRDVQGDVIDFVQLMTGVSFKKALSYL 78


>gi|221504944|gb|EEE30609.1| plectin, putative [Toxoplasma gondii VEG]
          Length = 2567

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 83/280 (29%), Gaps = 23/280 (8%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK--DQKL 420
             +     A E  +  +L   +               +  A          + ++   ++ 
Sbjct: 2281 AQAQQFAASEATLQAALSEAEKKSLACEARMREELQNHVAAASRIKAEEESRMQFVLEQE 2340

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            +   +    ++L++ F++   + S       +    +  +       ++   KG+  ++ 
Sbjct: 2341 KKKVAAEEAEKLRKTFERLWDQESAKMLQAYEAVARQLAEAQ-----RAMHAKGEELEEV 2395

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              REA      ++      E  +    +   + EL +L S       E       +    
Sbjct: 2396 KKREAEARRAALDATQEASEVQELREKLAARDAELSELRSANKEQTEELATVRANQ---- 2451

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIE 599
                       +L  +              +   R+  + Q      R R  +RQ EE E
Sbjct: 2452 ----------TRLAEEAARQREALEKQRDTLEKEREVLRGQVEDAKDRERERARQTEEQE 2501

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              + +  A+ E E     +  L  +  ++   + + A  E
Sbjct: 2502 SCLRRALAEREDEARQTTL-RLQVLEEELETEKRRNASAE 2540



 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 43/353 (12%), Positives = 104/353 (29%), Gaps = 22/353 (6%)

Query: 287  CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
                     ++      E +++ L     ++    D          K ++L L       
Sbjct: 1868 HAFATFRQDAARREEEREQEIQQLRDAMKKVEE--DQRGSLQPEKAKQLELELDAARAET 1925

Query: 347  RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
                       D    +R            ++    +   +R  +        ER  +E 
Sbjct: 1926 DSLRREALELRDAAECLRMQ-LETARADQQQAAAAFEDRLRRAVDEEKEAFFAERRRVEA 1984

Query: 407  HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
                 +  ++ +  R    +A  ++L    ++         R   +             L
Sbjct: 1985 THAEALTSLRAELSREQADRAAHEKLA---EELKACECALARERGEKEEAARAWQEELTL 2041

Query: 467  MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
                  + +   K    E  +L  +        E  ++LA++R   +   +L S L +  
Sbjct: 2042 ATRRQEEQEEEMKNKQAEIDVLNAM------QDELQEQLAELR---SRCSQLSSQLSAKE 2092

Query: 527  VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             E      EE+          +L + ++ + R A   +   E       +  +Q   L  
Sbjct: 2093 EEAPRGRDEEMACM-----QRQLAETVEEKGRLASELATVREVYAQQSEEQKKQLEDLAL 2147

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ--IESQEAM 637
              +   R+  ++++++  VT   E ++       L  +  +  +   ++ EA 
Sbjct: 2148 SLQASEREVADLQRRLEAVTLDVERQQQEAKAEHLRALEAKQSECMRKAGEAA 2200


>gi|220905283|ref|YP_002480595.1| replicative DNA helicase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869582|gb|ACL49917.1| replicative DNA helicase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 508

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 54/203 (26%), Gaps = 16/203 (7%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
              F +      G           + ++G +    ++ L++          E A+L  ++
Sbjct: 17  GAPFGQNGASGRGGRGGQSGQGSFKARQGSAADRAEADLLRRVPPHSVE-AEQAVLGGVL 75

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL----PEEIHQR--LCERGF 546
             P ++     +LA   +       ++      + +          E +  R  L E G 
Sbjct: 76  MRPQLMHAIVDQLAAEDFYVPTHATIYGAFLELYRKSAPIDLLSTAEMLKSRNALEEAGG 135

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQG---------YQQALALYKRFRLLSRQKEE 597
              L  L + V                  Q                       L  + E+
Sbjct: 136 AVYLGDLAQAVVSGANAEYYATIVRDKALQRGLIEACSGIITNCYDASLEVGTLLDESEQ 195

Query: 598 IEKQIAQVTAKGEAEKTAILISI 620
               I+Q T+  +   T  L+  
Sbjct: 196 AVFAISQRTSGRDFTPTRELLDR 218


>gi|5032311|ref|NP_004013.1| dystrophin Dp140ab isoform [Homo sapiens]
          Length = 1230

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 69  ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 124

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
            +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 125 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 184

Query: 323 ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                     D   +    + I+     +          L                 F  
Sbjct: 185 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 243

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 244 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 303

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
           +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 304 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 363

Query: 493 NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
               + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 364 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 422

Query: 550 -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 423 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 482

Query: 609 GEA 611
            + 
Sbjct: 483 TDE 485


>gi|118086916|ref|XP_419170.2| PREDICTED: similar to TAFII105 [Gallus gallus]
          Length = 615

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 55/157 (35%), Gaps = 14/157 (8%)

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK----YFLPEEIHQRLCERG 545
            L  +  ++    +  AD  +  +E   L   + +                +     +  
Sbjct: 382 ILATNSELIGTVTRSCADEPFLLSE--ALQKKILNIGKRHDIMELNSDVVNLISHATQER 439

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ---I 602
              LL++L    +        +E  I  V    +  L   ++   L +Q+++ E++   +
Sbjct: 440 LRGLLEKLTVIAQHRVSTHKGSETYI--VSSDTRAQLKFLEKLDHLEKQRKDEEEREMLL 497

Query: 603 AQVTAKGEAE--KTAILISILHEVHI-QIHQIESQEA 636
               ++   E  +   L   + E+   ++ Q++ +EA
Sbjct: 498 RAAKSRSNKEDPEHLRLKQKVKEMQQLELAQMQQREA 534


>gi|302870468|ref|YP_003839105.1| ATP-dependent chaperone ClpB [Micromonospora aurantiaca ATCC 27029]
 gi|302573327|gb|ADL49529.1| ATP-dependent chaperone ClpB [Micromonospora aurantiaca ATCC 27029]
          Length = 879

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 78/214 (36%), Gaps = 16/214 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++K+I + +   R ++           +  +++    + ++     ++++AL+  + ++H
Sbjct: 325 YRKHIEKDAALERRFQPVVVDEPSVEDAISILRGLRERLEVFHGVRIQDSALVSAVTLSH 384

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +     L + + S   E        +   + E      L + D
Sbjct: 385 RYISDRFLPD-KAIDLVDEACAMLRTEIDSQPAELDAASRRLMRLEIEEAA----LAKED 439

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                A L     E    D+R       A ++  R   R+ +E+ ++I QV  + EA + 
Sbjct: 440 DPASKARLDQLRKELA--DLRGEVDAMRAQWQAERQAIRRVQELREEIEQVRVEAEAAER 497

Query: 615 A---ILISILH-----EVHIQIHQIESQEAMIEG 640
                  + L      E+  ++   E + A  +G
Sbjct: 498 NYDLNTAAELRHGKLPELERRLQAEEERLAAKQG 531


>gi|218282106|ref|ZP_03488405.1| hypothetical protein EUBIFOR_00980 [Eubacterium biforme DSM 3989]
 gi|218216899|gb|EEC90437.1| hypothetical protein EUBIFOR_00980 [Eubacterium biforme DSM 3989]
          Length = 448

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 66/168 (39%), Gaps = 18/168 (10%)

Query: 483 REAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            E ++L +L+ +P ++Q+  + +L    +     Q+++  + +     +      +  RL
Sbjct: 11  LEQSVLGSLMVYPRVIQDCQELDLHAEEFYLPSHQQIYQAICTIHENGQPIDMNTVVTRL 70

Query: 542 CERGFGELLKQLDRQVR--DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ----- 594
            E    E  +  D  +R  D+ + SAT+ + I  ++    Q   L      +S +     
Sbjct: 71  QETDQLESSQGTDYIIRLADSAISSATSRSYIETIKNK-AQLRRLIYVADKISEEGYSSG 129

Query: 595 ------KEEIEK---QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                  ++ E+    + +     E E +  +++ +     ++  ++ 
Sbjct: 130 EDIDTVLDDAERLVMDVTRHRRGSEFESSEEIVTRVINELKELRTMKG 177


>gi|260829391|ref|XP_002609645.1| hypothetical protein BRAFLDRAFT_123563 [Branchiostoma floridae]
 gi|229295007|gb|EEN65655.1| hypothetical protein BRAFLDRAFT_123563 [Branchiostoma floridae]
          Length = 976

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/274 (9%), Positives = 76/274 (27%), Gaps = 25/274 (9%)

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              K            +         +  + I D + +  Y      +  Q  Q+ +   
Sbjct: 468 FSIKMALSTMCAGKLHKATSFITSSSDIFSQISDSRGQLVY-----PKFDQFLQEALALP 522

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSL-----VKGKLSKKPSLREAALLLTLINHPAIL 498
           S               K   Q   + ++     V       P L    L+  + N     
Sbjct: 523 SAVYEGPSFGYNETAAKSCFQSAQRVTINDFLDVMMADPGPPCLVWLPLMHRMANVENAF 582

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKY-----FLPEEIHQRLCERGFGELLKQL 553
                 +      ++E + +  +      EQ            +  +    G    L   
Sbjct: 583 P--VDTMDSTTRMDDEHRLIARYAARLAAEQNEQNTTPVDVSPLLHQSRSPGTELALNLD 640

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALA--------LYKRFRLLSRQKEEIEKQIAQV 605
             + +   +     + +  +V +   Q L            + R + R+ + + ++  + 
Sbjct: 641 ANRQQRELIAELEHKNSPREVAEKLAQWLREQTDLLSECQHKNREIMREIQRLRQEHDEA 700

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +   +  +   L++ L  +  +  ++E + + ++
Sbjct: 701 SRGMDESRNPTLLAELRLLRQRKDELELRMSALQ 734


>gi|254167406|ref|ZP_04874258.1| hypothetical protein ABOONEI_2219 [Aciduliprofundum boonei T469]
 gi|197623669|gb|EDY36232.1| hypothetical protein ABOONEI_2219 [Aciduliprofundum boonei T469]
          Length = 593

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 72/207 (34%), Gaps = 7/207 (3%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           +L+ L     ++     +  +   +  +             ++    K+  LRE  + L 
Sbjct: 117 KLKTLLDVEFSKREELEKEIETLRKEIETLKEELTKPLPEDIRELKKKEIELREELIRLE 176

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGE 548
                 +L+ + Q +A++   + EL++L   +    V+       E+ + L    +   E
Sbjct: 177 SEKRRKLLELESQNMANL--SDKELEELKEAIKDGNVKALTEKITELTKELEMKNKELEE 234

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           L  ++              E       +  ++   L  R + +  Q ++++    ++   
Sbjct: 235 LKNEIK---IKEDEMKKLQEMLKYKEDELIRREEDLLYREKKIEAQIKQLQMIKQEIGNM 291

Query: 609 GEAEKTAILISILHEVHIQIHQIESQE 635
            E      L  +  E+  +  ++ ++E
Sbjct: 292 DEIILKRRLEDLQEEIKRKEEELRAKE 318



 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 54/158 (34%), Gaps = 14/158 (8%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             ++E  +++ + +        +   +  +   +     E   +   E+    L K+++ 
Sbjct: 86  EEVEEIREKVEEAKKSVPGNVDVDQLIEENLKLKTLLDVEFSKREELEKEIETLRKEIET 145

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALY---KRFRLLS-----------RQKEEIEKQ 601
              +           +       ++ L      KR +LL            ++ EE+++ 
Sbjct: 146 LKEELTKPLPEDIRELKKKEIELREELIRLESEKRRKLLELESQNMANLSDKELEELKEA 205

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           I     K   EK   L   L   + ++ +++++  + E
Sbjct: 206 IKDGNVKALTEKITELTKELEMKNKELEELKNEIKIKE 243


>gi|157111095|ref|XP_001651387.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti]
 gi|108878533|gb|EAT42758.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti]
          Length = 1963

 Score = 45.6 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/260 (11%), Positives = 83/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1575 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1634

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1635 NKANAEAQKNIKRYQQQLKDVQSALEEEQRARDDAREQLGISER-------RANALQNEL 1687

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE----EIHQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1688 EESRTLLEQADRGRRQAEQELSDAHEQLNEVSAQNASIAAAKRKLESELQTLHSDLDELL 1747

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +T  L
Sbjct: 1748 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDDAETNAL 1807

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++ES+
Sbjct: 1808 KGGKKAIQKLEQRVRELESE 1827



 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 40/329 (12%), Positives = 95/329 (28%), Gaps = 23/329 (6%)

Query: 329  RAAYKAIDLVLCHLIPGNRVNFVLLSRGED-PDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
                + ID  +               R  D   + +    K   E L ++     D+   
Sbjct: 1568 SQVRQEIDRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINEL 1627

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA-------IRDRLQQLFQKYI 440
                + +     E  +     +  +  ++        ++        I +R     Q  +
Sbjct: 1628 EIALDHANKANAEAQKNIKRYQQQLKDVQSALEEEQRARDDAREQLGISERRANALQNEL 1687

Query: 441  TEHSGYGRYWKKNARHRDQK--GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
             E         +  R  +Q+     ++L + S     ++      E+ L     +   +L
Sbjct: 1688 EESRTLLEQADRGRRQAEQELSDAHEQLNEVSAQNASIAAAKRKLESELQTLHSDLDELL 1747

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
             E        +    +  +L   L     +      E++ + L ++   EL  +LD    
Sbjct: 1748 NEAKNSEEKAKKAMVDAARLADEL--RAEQDHAQTQEKLRKALEQQ-IKELQVRLDDAET 1804

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKR--------FRLLSRQKEEI--EKQIAQVTAK 608
            +A          +    +  +  L   +R         R   R+ +E+  + +  +   +
Sbjct: 1805 NALKGGKKAIQKLEQRVRELESELDSEQRRHTDAQKNLRKSERRIKELTFQSEEDRKNHE 1864

Query: 609  GEAEKTAILISILHEVHIQIHQIESQEAM 637
               +    L   +     QI + E   A+
Sbjct: 1865 RMQDLVDKLQQKIKTYKRQIEEAEEIAAL 1893


>gi|260440879|ref|ZP_05794695.1| replicative DNA helicase [Neisseria gonorrhoeae DGI2]
 gi|291044204|ref|ZP_06569913.1| replicative DNA helicase [Neisseria gonorrhoeae DGI2]
 gi|291011098|gb|EFE03094.1| replicative DNA helicase [Neisseria gonorrhoeae DGI2]
          Length = 468

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520
            +       +    L       E ++L   ++ +PA        ++   +  +E + ++ 
Sbjct: 5   AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +     E +      + + L         ++L+       L +           + Y +
Sbjct: 64  SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    R R + RQ  E+  +IA+     +      L+        QI   ES     +G
Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171

Query: 641 F 641
           F
Sbjct: 172 F 172


>gi|239998650|ref|ZP_04718574.1| replicative DNA helicase [Neisseria gonorrhoeae 35/02]
 gi|240115303|ref|ZP_04729365.1| replicative DNA helicase [Neisseria gonorrhoeae PID18]
          Length = 462

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 14/178 (7%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                 +    L       E ++L   ++ +PA        ++   +  +E + ++  + 
Sbjct: 2   PPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIA 60

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               E +      + + L         ++L+       L +           + Y + + 
Sbjct: 61  KLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV- 113

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
              R R + RQ  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 114 ---RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQGF 166


>gi|254166619|ref|ZP_04873473.1| hypothetical protein ABOONEI_1711 [Aciduliprofundum boonei T469]
 gi|289596331|ref|YP_003483027.1| RecA-superfamily ATPase implicated in signal transduction-like
           protein [Aciduliprofundum boonei T469]
 gi|197624229|gb|EDY36790.1| hypothetical protein ABOONEI_1711 [Aciduliprofundum boonei T469]
 gi|289534118|gb|ADD08465.1| RecA-superfamily ATPase implicated in signal transduction-like
           protein [Aciduliprofundum boonei T469]
          Length = 593

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 72/207 (34%), Gaps = 7/207 (3%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           +L+ L     ++     +  +   +  +             ++    K+  LRE  + L 
Sbjct: 117 KLKTLLDVEFSKREELEKEIETLRKEIETLKEELTKPLPEDIRELKKKEIELREELIRLE 176

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGE 548
                 +L+ + Q +A++   + EL++L   +    V+       E+ + L    +   E
Sbjct: 177 SEKRRKLLELESQNMANL--SDKELEELKEAIKDGNVKALTEKITELTKELEMKNKELEE 234

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           L  ++              E       +  ++   L  R + +  Q ++++    ++   
Sbjct: 235 LKNEIK---IKEDEMKKLQEMLKYKEDELIRREEDLLYREKKIEAQIKQLQMIKQEIGNM 291

Query: 609 GEAEKTAILISILHEVHIQIHQIESQE 635
            E      L  +  E+  +  ++ ++E
Sbjct: 292 DEIILKRRLEDLQEEIKRKEEELRAKE 318



 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 54/158 (34%), Gaps = 14/158 (8%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             ++E  +++ + +        +   +  +   +     E   +   E+    L K+++ 
Sbjct: 86  EEVEEIREKVEEAKKSVPGNVDVDQLIEENLKLKTLLDVEFSKREELEKEIETLRKEIET 145

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALY---KRFRLLS-----------RQKEEIEKQ 601
              +           +       ++ L      KR +LL            ++ EE+++ 
Sbjct: 146 LKEELTKPLPEDIRELKKKEIELREELIRLESEKRRKLLELESQNMANLSDKELEELKEA 205

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           I     K   EK   L   L   + ++ +++++  + E
Sbjct: 206 IKDGNVKALTEKITELTKELEMKNKELEELKNEIKIKE 243


>gi|109085772|ref|XP_001101161.1| PREDICTED: leucine zipper putative tumor suppressor 1-like [Macaca
           mulatta]
          Length = 596

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 81/250 (32%), Gaps = 29/250 (11%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  R    + +   L    +         G   K  ++ +     SQR  Q   ++    
Sbjct: 279 KLQRSLEEKELASSLAYEERPRRCRDELEGPEPKGGSKLKQASQKSQRAQQVLHLQVLQL 338

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDN-NELQK--------------LWSFL 522
           ++   +    L +L+    +L+ + +     +      L++              L   L
Sbjct: 339 QQEKRQLRQELESLMKEQDLLETKLRSYEREKTSFGPALEETQWEVCQKSGEISLLKQQL 398

Query: 523 FSDFVE--QKYFLPEEIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
                E   K      +  +L +      G     + L+  +R  GL     E    +++
Sbjct: 399 KESQTEVNAKASEILGLKAQLKDTRGKLEGLELRTQDLEGALRTKGLELEVCE---NELQ 455

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVHIQIH-QI 631
           +   +A  L ++  LL ++ +E+  Q A    +      E    L   L  +  ++  + 
Sbjct: 456 RKKNEAELLREKVNLLEQELQELRAQAALARDMVPPTFPEDVPALQRELERLRAELREER 515

Query: 632 ESQEAMIEGF 641
           +  + M  GF
Sbjct: 516 QGHDQMSSGF 525


>gi|119195685|ref|XP_001248446.1| hypothetical protein CIMG_02217 [Coccidioides immitis RS]
          Length = 1260

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 88/249 (35%), Gaps = 10/249 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            E +  +      R+ LE  + N    ++D+  +  + Q ++ R          +     
Sbjct: 573 EELKKANDELTLVRSSLEQQIANLQRTMQDE--KASHLQELKRREMLKSDALAAQKEELQ 630

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA- 506
            ++++  +  DQ    +   +   + G+  +  +  E  ++    +   +  E   +L  
Sbjct: 631 GHFQEMKKKDDQAAAEKLRAREEELYGERDQLKAEWEQQMVALNKSKDDMAAEYEGKLDT 690

Query: 507 -DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
                +  +  +L +       +Q      +      +        +L  + ++     +
Sbjct: 691 KKTELETKQ-GELDAKQAELQAKQSELDARQEELNATKSDLEAKQAELVDRQKELEEKQS 749

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
             EA   ++ +   +   L  +   L  ++ E+E++  ++ +K    +   +   L EV 
Sbjct: 750 EVEAKQEEINRLKSE---LESKIAELEDKRRELEQKQGELESK--QTELQAIQDELREVK 804

Query: 626 IQIHQIESQ 634
            ++ + +SQ
Sbjct: 805 AELEEKKSQ 813


>gi|59800890|ref|YP_207602.1| replicative DNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|59717785|gb|AAW89190.1| putative replicative DNA helicase [Neisseria gonorrhoeae FA 1090]
          Length = 468

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520
            +       +    L       E ++L   ++ +PA        ++   +  +E + ++ 
Sbjct: 5   AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +     E +      + + L         ++L+       L +           + Y +
Sbjct: 64  SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    R R + RQ  E+  +IA+     +      L+        QI   ES     +G
Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171

Query: 641 F 641
           F
Sbjct: 172 F 172


>gi|5305170|emb|CAA69163.2| ClpB-homologue [Thermus thermophilus]
          Length = 508

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 68/204 (33%), Gaps = 18/204 (8%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INHPA 496
           + I +     R ++           +  +++    K ++     + ++A++    ++H  
Sbjct: 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRY 371

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG--------E 548
           I + +  +   I   +    +L   L S   E      +++   +              E
Sbjct: 372 ITERRLPD-KAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQE 430

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            LK ++ ++       A   A     R+  ++      R   + R+ E  E+Q       
Sbjct: 431 RLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQ------- 483

Query: 609 GEAEKTAIL-ISILHEVHIQIHQI 631
            +  + A L    L ++  ++  +
Sbjct: 484 YDLNRAAELRYGELPKLEAEVEAL 507


>gi|87300884|ref|ZP_01083726.1| peptide chain release factor 1 [Synechococcus sp. WH 5701]
 gi|87284755|gb|EAQ76707.1| peptide chain release factor 1 [Synechococcus sp. WH 5701]
          Length = 367

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN-IVDVRQGYQQALALYKRFRL 590
             P  + +RL         + L+RQ+ D  + +  +E   +   R   +        ++ 
Sbjct: 1   MDPSLLRERLEAA--DRTFQALERQLADPAVAADPSELRRLSKERARLEPLATGLGHWQS 58

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           L RQ +E ++   Q  +KG+ E  A++   L E+  Q+  +E Q
Sbjct: 59  LQRQLKEAQQLARQ--SKGDPEMEALIQEELRELGAQLDGLEQQ 100


>gi|309812358|ref|ZP_07706113.1| ATP-dependent chaperone protein ClpB [Dermacoccus sp. Ellin185]
 gi|308433663|gb|EFP57540.1| ATP-dependent chaperone protein ClpB [Dermacoccus sp. Ellin185]
          Length = 900

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/208 (9%), Positives = 70/208 (33%), Gaps = 12/208 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++ I +     R +++          +  +++    + +   K ++ + AL+       
Sbjct: 327 YRENIEKDPALERRFQQVFVGEPSVEDTIAILRGLKERYEAHHKVAIADQALVAAATLSD 386

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLD 554
             +  +      I   +    +L   +     +      +++ + +      EL L+   
Sbjct: 387 RYITSRQLPDKAIDLIDEAASRLRMEI-----DSSPVEIDQLRRSVDRMNMEELHLESET 441

Query: 555 RQVRDAGLWSATTEANIVDVR-----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
                  L     +    + +       ++   A   +   L  Q +++  Q  ++  +G
Sbjct: 442 DPASRDRLAKLRADRADTEEQLAALTARWEAEKASLNKVGDLKAQIDDLRTQAEKLQREG 501

Query: 610 EA-EKTAILISILHEVHIQIHQIESQEA 636
           +    + +L   +  +  Q+ + ++ EA
Sbjct: 502 DYGNASKLLYGDIPALEKQLDEAQAAEA 529


>gi|255693758|ref|ZP_05417433.1| putative mobilizable transposon, excision protein [Bacteroides
          finegoldii DSM 17565]
 gi|260620442|gb|EEX43313.1| putative mobilizable transposon, excision protein [Bacteroides
          finegoldii DSM 17565]
          Length = 330

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF---LSAL 80
          Y    ++  N      W   P  DE   SF  N  +  +Y F     G  +     L A 
Sbjct: 20 YSPVKQQGINL-----WYKSPLRDETEASFKVNTERNQWYDFGLGKGGGTIELAAHLYAT 74

Query: 81 LGCSFIESVQRLAAI 95
             S++  ++R+A  
Sbjct: 75 DHVSYL--LERIAEQ 87


>gi|254516846|ref|ZP_05128904.1| replicative DNA helicase [gamma proteobacterium NOR5-3]
 gi|219674351|gb|EED30719.1| replicative DNA helicase [gamma proteobacterium NOR5-3]
          Length = 132

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 36/116 (31%), Gaps = 6/116 (5%)

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
            Q+  S R     + + KL  +    E ++L  L+          + ++   +   + + 
Sbjct: 6   PQRSQSNRPFDGDVARIKLQPQSVEAEQSVLGGLMISQDAWDGVAELVSPEDFYRPDHRL 65

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLC------ERGFGELLKQLDRQVRDAGLWSATT 567
           ++  + +     +      +  +L         G    L +L      A    AT 
Sbjct: 66  IFRQIRNLAEASQPVDVVTLADQLQLSGELDAAGGHAYLSELAENTPSASNIRATP 121


>gi|307546112|ref|YP_003898591.1| replicative DNA helicase [Halomonas elongata DSM 2581]
 gi|307218136|emb|CBV43406.1| replicative DNA helicase [Halomonas elongata DSM 2581]
          Length = 462

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 48/163 (29%), Gaps = 10/163 (6%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
                  K+       E ++L  L+   A        L    +   E + +++ +     
Sbjct: 8   DKETAALKVPPHSLEAEQSVLGGLMLDNAAWDNVADRLVADDFYRYEHRLIFNVMGQLAE 67

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E +      + + L  R   + +  L      A    + +            +A A   R
Sbjct: 68  EARPMDVVTLSEALEGRDQLDTVGGLAYLAELARNTPSASNI----------RAYADIVR 117

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            R   R+      Q+A+     +      L++    +  QI +
Sbjct: 118 ERATLRKLIRAANQVAESAFAPQGRPADELVNEAERLVFQISE 160


>gi|294010982|ref|YP_003544442.1| putative phage DNA primase/helicase [Sphingobium japonicum UT26S]
 gi|292674312|dbj|BAI95830.1| putative phage DNA primase/helicase [Sphingobium japonicum UT26S]
          Length = 482

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 75/289 (25%), Gaps = 37/289 (12%)

Query: 251 FFGALNYLQKSIRKDVRRNS--------SSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302
              A   + +     +               +I+VEG  D L+   AG + VVS    A 
Sbjct: 56  LDKARQAMDQGAPLTLLNIDCLSDESLAGQPLIIVEGEWDFLATLTAGKRRVVSVPNGAP 115

Query: 303 TEY----------QLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
            E           +    W+          ++L  D D+PG   A     L         
Sbjct: 116 KEASGDDELQEGARYAWFWRHYDALSRIKSVILAVDNDEPGKALAADLCRLFGPE----R 171

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
                  +  +DP+  +   G     +++  + P          +     +         
Sbjct: 172 CSFVEYPAGCKDPNDVVIHSGHQRLVEVLDAAKPYPVKGLYALDDFPEQPSYQAWPTGVG 231

Query: 407 HLKNCINHIKDQ-KLRYYYSQA-----IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
            L      +     +   Y+       +   L  L ++ I   +       K   HR  +
Sbjct: 232 ELDELFQIVPRTFTVATGYAGQGKTSFLMWILANLIRRGIHVTAASFETDIKPIFHRKLR 291

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
                  + +  + K            L  + + P    +    L+   
Sbjct: 292 AAILETGEFAQHEPKERDWADGMIRRYLAIISHSP---MDDEDALSVED 337


>gi|291231194|ref|XP_002735551.1| PREDICTED: janus kinase and microtubule interacting protein 1-like
            [Saccoglossus kowalevskii]
          Length = 3679

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            ++  ++L ++     ELQ+    L +   + +  L E    +L       L+K++     
Sbjct: 1568 EDLREKLDEVEKSEKELQEKVLQLENSDKDLRDKLSELESAQLDSSNNEALMKEIKELEL 1627

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAI 616
            +        +  +      +++  +L ++ + L R  +E+ K++A+++ + E   E    
Sbjct: 1628 EVQRR---KDIEVDLKEDHFEELTSLQEQIQDLERTNQELRKKLAELSEELECIDELKKE 1684

Query: 617  LISILHEVHIQIHQIESQEA 636
             +S +  +  +I  +E+Q A
Sbjct: 1685 HLSEVSNLQGKIKDLENQNA 1704



 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 88/284 (30%), Gaps = 18/284 (6%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R +     E  + + +  +    +   +     T   R   E   +      +DQ     
Sbjct: 1978 RIHELEELEGDLKDRISQLAEAERTAKDMLQEATVVYRENEEALKERIEQLEEDQGEMQG 2037

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK----GKLSKK 479
               A+ +    +  +            K N R +++    +   Q+   +     K  + 
Sbjct: 2038 QIHALENLKAMMRGQIEDAEQHNKETQKANKRLQEKIEQFESGEQAHKDELNRMKKQLET 2097

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                E            +L +Q +++      N   + L   +            +    
Sbjct: 2098 TEQAEK-------ESQKLLSQQLEDIQTESKSNE--KNLRDRVKELEYSDNELQNKLYET 2148

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG---YQQALALYKRFRLLSRQKE 596
               +    + L+  + + +     +   +  I ++ +     ++ L   +     S +  
Sbjct: 2149 ETVKTELEDRLESAEIENKRVKESNNHLKEQIDELEEENSKLRRDLEDTQEKADESERIS 2208

Query: 597  -EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             E++ ++ +  + G+ +K       L ++  QI +++  E M++
Sbjct: 2209 SELKDRLHETESVGDMKKMEE-QKSLEKIQKQIEELQMSEEMLK 2251



 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 90/291 (30%), Gaps = 19/291 (6%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            + +            +  ++   +   +       +   + EI +K     I    L+  
Sbjct: 1766 KEHHLKDQLSESEVVIKTLNEKVQALQQQEVTLKKEVEKQEEIKVKASEREIATYSLQER 1825

Query: 424  Y--SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                Q     L+    +         + +++  + R +   + ++    L   +   +  
Sbjct: 1826 IAELQECESLLKAKIIELTESEESAKKNYQETLKDRIENEKAWKVKIKDLEDTEDKSRLR 1885

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP--EEIHQ 539
            L+E  ++        + ++   ++ +    +   ++    L     E +      ++  Q
Sbjct: 1886 LQEMEVVEI-----DLREQLEAKVRENEVASEMWRQSEDLLNERVAELEELETVLKQRIQ 1940

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             L +       +   +       W    E++ +  ++   +   L    +    Q  E E
Sbjct: 1941 ELEDNESHLKQEIKQKTKETENTWKQAAESSTLAYQERIHELEELEGDLKDRISQLAEAE 2000

Query: 600  K----QIAQV------TAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +     + +         +   E+   L     E+  QIH +E+ +AM+ G
Sbjct: 2001 RTAKDMLQEATVVYRENEEALKERIEQLEEDQGEMQGQIHALENLKAMMRG 2051



 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 73/217 (33%), Gaps = 10/217 (4%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                  ++ +L +          ++      +   +   +  ++    +    K+    E
Sbjct: 801  LDDCNKKIDELEEIIEDRKKSESKFHAMEDVYLKNESKLKDEIKLLKKQMSSDKEGRDYE 860

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK--YFLPEEIHQRLC 542
              LL   I     ++++ Q++A +   N+ LQ+    +    ++ K    + E+      
Sbjct: 861  NELLFQKIAE---VRDEKQKVAILEESNSALQEKLDRVSDSSLQSKLDSLVKEDTLAAKE 917

Query: 543  ERGFGEL-LKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                 ++ LK +        L +   E  A    + +  Q  L L K    L R+  E++
Sbjct: 918  GAESKQIELKSVMTLEELQHLKAKVDEIKAAHQKIAEMEQTELVLRKHIEALEREIVELQ 977

Query: 600  KQIAQVTAKGEAEKTAILISI--LHEVHIQIHQIESQ 634
            + I    +    +     I    L E+  +  Q E Q
Sbjct: 978  ENIQHHESSYNEKVEEYEIREHTLKEISRKAEQAEVQ 1014



 Score = 37.2 bits (84), Expect = 8.0,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 59/207 (28%), Gaps = 17/207 (8%)

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
              L +  +   +   R     A   ++K          L +     +  + E  +  T++
Sbjct: 1469 ADLKESNVRLVNQEQRLESVIAAAGEEKVKVLTKENDELTQKLEEAENRIEEQDIQETVL 1528

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                   +   EL D    +         +       K        Q        E L +
Sbjct: 1529 K------KIINELEDSEKTS------RERIVELEESGKTVKAALDGQEKTSEDLREKLDE 1576

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQQALALYK---RFRLLSRQKEEIEKQIAQ--VTA 607
            +++  ++        E +  D+R    +  +          L ++ +E+E ++ +     
Sbjct: 1577 VEKSEKELQEKVLQLENSDKDLRDKLSELESAQLDSSNNEALMKEIKELELEVQRRKDIE 1636

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQ 634
                E     ++ L E    + +   +
Sbjct: 1637 VDLKEDHFEELTSLQEQIQDLERTNQE 1663


>gi|240125396|ref|ZP_04738282.1| replicative DNA helicase [Neisseria gonorrhoeae SK-92-679]
          Length = 462

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 14/178 (7%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                 +    L       E ++L   ++ +PA        ++   +  +E + ++  + 
Sbjct: 2   PPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIA 60

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               E +      + + L         ++L+       L +           + Y + + 
Sbjct: 61  KLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV- 113

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
              R R + RQ  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 114 ---RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQGF 166


>gi|240016211|ref|ZP_04722751.1| replicative DNA helicase [Neisseria gonorrhoeae FA6140]
          Length = 468

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520
            +       +    L       E ++L   ++ +PA        ++   +  +E + ++ 
Sbjct: 5   AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +     E +      + + L         ++L+       L +           + Y +
Sbjct: 64  SITKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    R R + RQ  E+  +IA+     +      L+        QI   ES     +G
Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171

Query: 641 F 641
           F
Sbjct: 172 F 172


>gi|42558933|sp|Q8HZ57|CCHCR_PANPA RecName: Full=Coiled-coil alpha-helical rod protein 1; AltName:
           Full=Alpha-helical coiled-coil rod protein
 gi|23296172|gb|AAN12282.1| HCR [Pan paniscus]
          Length = 782

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 89/277 (32%), Gaps = 17/277 (6%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD--ERAELEIHLKNCINHIKDQKLR 421
           +        +L+V ++    +  +                     +    ++ I+    R
Sbjct: 421 QTASAEEQLRLVVNAVSSSQIWLETTMAKVEEAAAQLPSLNNRLSYAVRKVHTIRGLIAR 480

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                 +R     L            +  ++  R   +   S RL+Q  + + +   +  
Sbjct: 481 KLALAQLRQESCPLPPPVADVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGE-- 538

Query: 482 LREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             E   L  +       LQ+  + LA +       ++          ++       + Q 
Sbjct: 539 -AERQQLSKVAQQLERELQQTQESLASLGLQLEVARQ--------GQQESTEEAASLRQE 589

Query: 541 LCERGF---GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           L ++       L +++           + TE  + + R+ + +A+   ++ +  + Q++E
Sbjct: 590 LTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKE 649

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             +++ ++  +   E+   L   L E+    + + + 
Sbjct: 650 RSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 686


>gi|227908806|ref|NP_001020274.2| EF-hand calcium-binding domain-containing protein 4A [Mus musculus]
 gi|142983446|sp|Q80ZJ8|EFC4A_MOUSE RecName: Full=EF-hand calcium-binding domain-containing protein 4A
 gi|148686148|gb|EDL18095.1| EF-hand calcium binding domain 4A, isoform CRA_b [Mus musculus]
 gi|148686150|gb|EDL18097.1| EF-hand calcium binding domain 4A, isoform CRA_b [Mus musculus]
 gi|148686152|gb|EDL18099.1| EF-hand calcium binding domain 4A, isoform CRA_b [Mus musculus]
          Length = 394

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           S  +E      E + Q L  R          L ++L++Q+ +      +      + R  
Sbjct: 176 SACLEAAAREREGLEQALRRRESEHEREVRGLYEELEQQLGEQRHRRQSQNLPREEQRGH 235

Query: 578 YQQALALYKRFRLLSR---QKEEIEKQIAQ--VTAKGEAEKTAILISILHEVHIQIHQIE 632
               L L  R + L R   ++ E+E+Q+            +   L      +  Q+ Q +
Sbjct: 236 L--ELELQTREQELERAGLRQRELEQQLQARAAEQLEAQAQHIQLQRAYEAIRAQLDQAQ 293

Query: 633 SQEAMIEGFGKMSGR 647
            Q + +E  G+  GR
Sbjct: 294 EQLSRLE--GEAQGR 306


>gi|220930523|ref|YP_002507432.1| hypothetical protein Ccel_3161 [Clostridium cellulolyticum H10]
 gi|220000851|gb|ACL77452.1| zinc finger CHC2-family protein [Clostridium cellulolyticum H10]
          Length = 340

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 40/101 (39%), Gaps = 12/101 (11%)

Query: 28  DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIE 87
           ++R +N    ++              + +D+K  +YC++    G  + FL      S+++
Sbjct: 29  EKRGSNYHIKNHGGL-----------YIDDAKNSFYCWAAERGGGPIQFLMFTENKSWLD 77

Query: 88  SVQRLAAIAGV-PLPVVDPKIEKKEKIQTDLIRLIEVATDF 127
           S++ L     +        K  K  + +    +L + A+ +
Sbjct: 78  SMKYLIGDGEMQQTQEASLKQHKPIEKKQVEFKLPDKASQY 118


>gi|107099082|ref|ZP_01363000.1| hypothetical protein PaerPA_01000091 [Pseudomonas aeruginosa PACS2]
          Length = 902

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 42/141 (29%), Gaps = 26/141 (18%)

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L      +       +   + +      ++ L+ ++      SA   A     R      
Sbjct: 424 LLDTACARTAISLHAVPAEVDDS--RRRIEALETELAIIRRESAIGVATAERQRNAETLL 481

Query: 582 LALYKRFRLLSRQKEEIEKQ------------------------IAQVTAKGEAEKTAIL 617
               +R   L ++  E ++                         + +   + + E+   L
Sbjct: 482 AEERERLAALEQRWAEEKRLVDELLETRARLRAAAEAVDAGGVPLGEGEVRLDEEQRQAL 541

Query: 618 ISILHEVHIQIHQIESQEAMI 638
            + L E+  Q+  ++ +E +I
Sbjct: 542 HARLAELQAQLSALQGEEPLI 562


>gi|15595288|ref|NP_248780.1| ClpV1 [Pseudomonas aeruginosa PAO1]
 gi|81542104|sp|Q9I742|CLPV1_PSEAE RecName: Full=Protein ClpV1
 gi|9945915|gb|AAG03480.1|AE004447_13 ClpV1 [Pseudomonas aeruginosa PAO1]
          Length = 902

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 42/141 (29%), Gaps = 26/141 (18%)

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L      +       +   + +      ++ L+ ++      SA   A     R      
Sbjct: 424 LLDTACARTAISLHAVPAEVDDS--RRRIEALETELAIIRRESAIGVATAERQRNAETLL 481

Query: 582 LALYKRFRLLSRQKEEIEKQ------------------------IAQVTAKGEAEKTAIL 617
               +R   L ++  E ++                         + +   + + E+   L
Sbjct: 482 AEERERLAALEQRWAEEKRLVDELLETRARLRAAAEAVDAGGVPLGEGEVRLDEEQRQAL 541

Query: 618 ISILHEVHIQIHQIESQEAMI 638
            + L E+  Q+  ++ +E +I
Sbjct: 542 HARLAELQAQLSALQGEEPLI 562


>gi|326933380|ref|XP_003212783.1| PREDICTED: centrosomal protein of 164 kDa-like [Meleagris
           gallopavo]
          Length = 1140

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/332 (8%), Positives = 94/332 (28%), Gaps = 70/332 (21%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                   +  +E L V     ++       E       + + +           I+ +K
Sbjct: 413 QELALQKLREEWESLQVMEKENMERKKLLALEKMKLEMEEAQQK---------ETIRLEK 463

Query: 420 LRYYYSQAIRDRL------------QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
            +  + + +++RL            +Q   +     S      +K       +    +  
Sbjct: 464 EKEQFLRELKERLEMEKKKAAEELEKQFATELQQLKSAAEEKHRKVTSSLQTQIAEAQRS 523

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN--------ELQKLW 519
           Q + ++  L +     +            + +   ++  ++  D+         E Q++ 
Sbjct: 524 QEAWLREDLQRAEEKVQQKAYQVAEYERELSELMSEKRHEVEKDHERKMERMKEEHQEVL 583

Query: 520 SFLFSDFVEQKYFLPEEIHQ----------RLCERGFGELLKQLDRQVRDAGLWSATTEA 569
           + +   + E++     E+ +          +L E     L  +LD ++          + 
Sbjct: 584 ARIQDQYEEEERKQRAELFEGLRGEMARLRQLHEVEVKTLQAELDERLAALQHRHGEKQR 643

Query: 570 NIVDVRQGYQ--------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--------- 612
            + D     +        +++ L  +   L R+K+++  +  +   + +           
Sbjct: 644 RLQDSENELEIRAKNIKARSMQLLSQEESLRRKKQQLLDEDKRTERERDEAALTSQLRLE 703

Query: 613 --------------KTAILISILHEVHIQIHQ 630
                         +    +  L +   ++  
Sbjct: 704 ENRKEHANLLESIWQLRKALEELQDQKAELEA 735



 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 87/273 (31%), Gaps = 15/273 (5%)

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
            +KL  +    +  L +   +         R E    L      I  +       + IR 
Sbjct: 354 TQKLYEQKEKSLRTLKEDLAKVCEEEELRVRKEETERLSRLRATITSETEAE--KEKIRA 411

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             +   QK   E        K+N   +      +  ++    + K + +    +   L  
Sbjct: 412 EQELALQKLREEWESLQVMEKENMERKKLLALEKMKLEMEEAQQKETIRLEKEKEQFLRE 471

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL------CER 544
           L     + +++  E  + ++           L S   E+   +   +  ++       E 
Sbjct: 472 LKERLEMEKKKAAEELEKQFATE-----LQQLKSAAEEKHRKVTSSLQTQIAEAQRSQEA 526

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL--YKRFRLLSRQKEEIEKQI 602
              E L++ + +V+      A  E  + ++    +  +     ++   +  + +E+  +I
Sbjct: 527 WLREDLQRAEEKVQQKAYQVAEYERELSELMSEKRHEVEKDHERKMERMKEEHQEVLARI 586

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                + E ++ A L   L     ++ Q+   E
Sbjct: 587 QDQYEEEERKQRAELFEGLRGEMARLRQLHEVE 619


>gi|324505586|gb|ADY42399.1| Epidermal growth factor receptor substrate [Ascaris suum]
          Length = 752

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 6/136 (4%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR----LCERGFGELLKQLDRQVRDAG 561
             I   N EL  L   +     E++      +       +       L  +L        
Sbjct: 402 EAISSGNEELDALQQEVQKLIAERREADQAIVQLEADMTVKNSEIKNLQIELTTLENTVA 461

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA--QVTAKGEAEKTAILIS 619
                       ++    Q   L      L  + +E E ++   +       E  A    
Sbjct: 462 QLERQKAEAERRLQALDNQIAQLESTGEHLKVKLQEEEARLNALRTENARSKENAAKENE 521

Query: 620 ILHEVHIQIHQIESQE 635
            L +   Q+  ++ Q+
Sbjct: 522 ELMKAQEQLRSLQEQQ 537



 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANI----VDVRQGYQQALALYKRFRLLSRQKEEIE 599
               + +++L  + R+A       EA++     +++    +   L      L RQK E E
Sbjct: 412 DALQQEVQKLIAERREADQAIVQLEADMTVKNSEIKNLQIELTTLENTVAQLERQKAEAE 471

Query: 600 KQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQEA 636
           +++  +  +    ++    L   L E   +++ + ++ A
Sbjct: 472 RRLQALDNQIAQLESTGEHLKVKLQEEEARLNALRTENA 510


>gi|325298264|ref|YP_004258181.1| DNA primase [Bacteroides salanitronis DSM 18170]
 gi|324317817|gb|ADY35708.1| DNA primase [Bacteroides salanitronis DSM 18170]
          Length = 289

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 81/265 (30%), Gaps = 21/265 (7%)

Query: 34  AVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLG---CSFIESVQ 90
               + W   P  +E   SF  N +   ++ F     GD ++  S L G    S++  ++
Sbjct: 25  QCGANLWYRSPLREETDASFKVNTALNKWFDFGIGKGGDLIALASELYGSKDVSYL--LR 82

Query: 91  RLAAIAGVPLPVVDPKIEKKEKIQTDLI--RLIEVAT-DFFHHSLKNARDKRLHYYLDER 147
           ++ + A    P+ DP   K+EK +       ++E+A+   + +  +   +          
Sbjct: 83  QIGSQAPHACPMTDPF-PKREKPKPAFQDVEVMELASPALYRYLKERGIEAETARKECRE 141

Query: 148 GIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLI 207
                  + +     P+        +R + F      +A   I                +
Sbjct: 142 IRYGLGGKRYFAVGFPNMNGG--YEIRNRYFKACISPKAVSYIREPEGKRPMCCLFEGFM 199

Query: 208 FPIRSSRGQVIAFGGRTLSKGESVKYLNS--------PETILFHKGKNLYNFFGALNYLQ 259
             +     Q     G     G     LNS        P    + + +   +   A     
Sbjct: 200 DYLSFLTLQKKGVEG--FQPGCDHIVLNSVANLAKAVPLLDGYKEIRCFLDNDRAGKDAL 257

Query: 260 KSIRKDVRRNSSSFIILVEGYMDVL 284
           K++R+    +          + D+ 
Sbjct: 258 KNLRETYGGHVKDESFKYSTWKDLN 282


>gi|312142471|ref|YP_003993917.1| hypothetical protein Halsa_0067 [Halanaerobium sp. 'sapolanicus']
 gi|311903122|gb|ADQ13563.1| hypothetical protein Halsa_0067 [Halanaerobium sp. 'sapolanicus']
          Length = 152

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 55  CNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114
            +  K  Y C  C  KG  + + S   GC+F ES+Q +     + L          E   
Sbjct: 62  IDPIKNTYQCNKCGSKGTIIEWYSKAHGCNFSESIQYINDYYNLNLLKD-----IDESNM 116

Query: 115 TDLIRLIEVATDFFHHSL 132
             +++L+E   D +  SL
Sbjct: 117 NRIMKLVENYNDLYIKSL 134


>gi|293399403|ref|ZP_06643556.1| replicative DNA helicase [Neisseria gonorrhoeae F62]
 gi|291609972|gb|EFF39094.1| replicative DNA helicase [Neisseria gonorrhoeae F62]
          Length = 468

 Score = 45.6 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520
            +       +    L       E ++L   ++ +PA        ++   +  +E + ++ 
Sbjct: 5   AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +     E +      + + L         ++L+       L +           + Y +
Sbjct: 64  SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    R R + RQ  E+  +IA+     +      L+        QI   ES     +G
Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171

Query: 641 F 641
           F
Sbjct: 172 F 172


>gi|317138239|ref|XP_001816777.2| DNA repair protein Rad50 [Aspergillus oryzae RIB40]
          Length = 1448

 Score = 45.6 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 94/295 (31%), Gaps = 23/295 (7%)

Query: 355  RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              ED  +               ++          E E        +R EL   L++    
Sbjct: 843  DDEDVKNLEEDLEAARSASTSYDTWSRFQQTEIPELEKEEEQYVLQRDELLNQLEDRDKI 902

Query: 415  IKDQKLRYYYSQAIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM- 467
            + ++  +    +A+        R     +   ++        +     R  +   + +  
Sbjct: 903  VSEKTEKKRDVEALAKTVNTIVRYDGEIKSIRSQIQDLSSKQQDTTSARTLEDIQEEIAA 962

Query: 468  ---QSSLVKGKLSKKPSLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLF 523
               +S  +K  LSK    +E     T IN+  + L++    L + ++       L + + 
Sbjct: 963  IGEKSRALKKSLSKLTHEKEQT--QTEINNLELQLRDVKSNLDNAKFQLERKSDLLARI- 1019

Query: 524  SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
             ++        E I +   +R   +L  +L +        S   EA   +++Q   Q   
Sbjct: 1020 EEYKNLNNQQREAIAKA--DRDIEDLTPELLKVQAKYDDISQRAEAREREMQQTISQMSE 1077

Query: 584  LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
                      Q E   ++I     +G   +       L  +  QI Q+E+++A I
Sbjct: 1078 SVH-------QLELANEEIDAYNERGGPTQLERSKRELENIEKQIGQLEAEQANI 1125


>gi|229163542|ref|ZP_04291492.1| hypothetical protein bcere0009_43080 [Bacillus cereus R309803]
 gi|228619924|gb|EEK76800.1| hypothetical protein bcere0009_43080 [Bacillus cereus R309803]
          Length = 786

 Score = 45.6 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +    
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIVEFNED 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKVQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|170723511|ref|YP_001751199.1| virulence-associated protein E [Pseudomonas putida W619]
 gi|169761514|gb|ACA74830.1| virulence-associated protein E [Pseudomonas putida W619]
          Length = 136

 Score = 45.6 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 1  MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
          MN P   +  L     +  +I +               + ACCP H +K+PS   +++  
Sbjct: 1  MNIPSQRLSALTGSACLEKVISRLDKVKSAGA----SKWIACCPAHLDKSPSLKISETSD 56

Query: 61 ---FYYCF-SCHV 69
                C+  C  
Sbjct: 57 GVVLIKCWAGCSA 69


>gi|240013771|ref|ZP_04720684.1| replicative DNA helicase [Neisseria gonorrhoeae DGI18]
 gi|240120839|ref|ZP_04733801.1| replicative DNA helicase [Neisseria gonorrhoeae PID24-1]
          Length = 462

 Score = 45.6 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 14/178 (7%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                 +    L       E ++L   ++ +PA        ++   +  +E + ++  + 
Sbjct: 2   PPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIA 60

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               E +      + + L         ++L+       L +           + Y + + 
Sbjct: 61  KLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV- 113

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
              R R + RQ  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 114 ---RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQGF 166


>gi|126238333|gb|ABO07440.1| paramyosin [Dictyocaulus viviparus]
          Length = 876

 Score = 45.6 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 90/273 (32%), Gaps = 23/273 (8%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D   +            E+  +       +      +   +R  L+    + +  + DQK
Sbjct: 166 DQVQKDKHIAEKAAERFEAQSIELSNKVEDLNRHVNDLAQQRQRLQAENNDLLKEVHDQK 225

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           ++    Q ++  L Q  ++         R   +      Q       ++++L +   ++ 
Sbjct: 226 VQLDNLQHVKYTLAQQLEEARRRLEDAERERSQLQSQLHQVQLELDSVRTALDEESAARS 285

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +          + +  I Q + +  A++   + E++ L   +     E           
Sbjct: 286 DAEH-----KLNLANTEITQWKSKFDAEVALHHEEVEDLRKKMLQKQAEY---------- 330

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              E     +L+++ +  +      +  E  IVD+ +       L +    L +Q  E++
Sbjct: 331 ---EEQIEIMLQKISQLEKAKSRLQSEVEVLIVDLEKAQNTIAILERAKEQLEKQCAELK 387

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +I ++  +            L  V+ ++ +++
Sbjct: 388 VRIDELNVE-----LEAAQRELRAVNAELQKMK 415


>gi|118411003|ref|YP_874398.1| DNA replication helicase [Phaeodactylum tricornutum]
 gi|116739750|gb|ABK20621.1| DNA replication helicase [Phaeodactylum tricornutum]
          Length = 460

 Score = 45.6 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 52/181 (28%), Gaps = 19/181 (10%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
                    L+  K      L E  +L  L+ +   ++   ++L    +     Q+++  
Sbjct: 2   QQTPFNVDQLIIDKYLPHNFLAEKMILSCLLINSEAIEITLRKLPYEAFYFKNHQEIYKA 61

Query: 522 LFSDFVEQKYFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANI 571
           +   +  +K      +   L + G            EL+ Q+   V      S   +  I
Sbjct: 62  VMILYKNKKCIDILTLLTFLQDNGLLQKIGGVKVLIELMSQIPNLVYLEEYISLVKDKFI 121

Query: 572 ---------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
                      +  GY   L L +       +   +  +I        AE    +   L 
Sbjct: 122 RRSLIKLGYEVINSGYITNLPLEQILGDFENKLFNLTNEITSQKLFSSAELLNNIFFELK 181

Query: 623 E 623
           E
Sbjct: 182 E 182


>gi|313825593|gb|EFS63307.1| DivIVA domain protein [Propionibacterium acnes HL063PA1]
          Length = 361

 Score = 45.6 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 3/148 (2%)

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              I     + +       +  +N  L+     L S    ++    + ++          
Sbjct: 23  YRAIEVDDFVDKVEAAFMTLTDENERLKAQVEALRSSEPGEQRPDQDLLN---ENEHLRA 79

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            +++L  Q     + S   +      +   ++A  L +    L  Q EE+ +   +    
Sbjct: 80  QVEELRSQQNGRSVNSGEVDRAKAAQQDAEKRARQLEQERVSLQSQIEELRQAARRPGQD 139

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636
            +  + A L S    +  Q+   +S  A
Sbjct: 140 IDPAEVARLRSENERLGAQLRDAQSLAA 167


>gi|237711317|ref|ZP_04541798.1| DNA primase [Bacteroides sp. 9_1_42FAA]
 gi|229454012|gb|EEO59733.1| DNA primase [Bacteroides sp. 9_1_42FAA]
          Length = 323

 Score = 45.6 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 8/68 (11%)

Query: 7  FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
           I+D+   I +++ +    Y    ++  N      W   P  +E   SF  N     +Y 
Sbjct: 2  TIQDVKQ-IKLADYLQSLGYTPVKQQGKNL-----WYKSPLREETDASFKVNTELEKWYD 55

Query: 65 FSCHVKGD 72
          F     G+
Sbjct: 56 FGIGKGGN 63


>gi|197294373|ref|YP_001798914.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma
           australiense]
 gi|171853700|emb|CAM11590.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma
           australiense]
          Length = 427

 Score = 45.6 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 46/147 (31%), Gaps = 17/147 (11%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E ALL  L+ +P  +      +    + N + + ++  +    ++ +      +   L 
Sbjct: 4   AERALLGALLLNPEKMDVVINLVNTNNFSNPKHRCIFETMKQLKLQNREIDYVTVGSVLD 63

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                     L +      L      +   +  + Y   +      + L    +++  ++
Sbjct: 64  NN--------LYKIGGIDYLIELVEGSPASEYLETYIDLIKENSLKKDLLGLIKQLPSEL 115

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIH 629
           +         KT  + + L  V  Q+ 
Sbjct: 116 S---------KTKNIHNYLQTVKNQVE 133


>gi|167006318|ref|YP_001661541.1| replicative DNA helicase [Streptomyces sp. HK1]
 gi|166162400|gb|ABY83521.1| probable replicative DNA helicase [Streptomyces sp. HK1]
          Length = 460

 Score = 45.6 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 9/93 (9%), Positives = 26/93 (27%), Gaps = 1/93 (1%)

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA-DIRYDN 512
            R   Q          +    ++  +    E  +L  +I     +++  + L     +  
Sbjct: 4   RRLAGQHPAVASEGPGASALERMPPQDIAAERTVLGCMILSKDAIRDAAEVLEGPSDFYR 63

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                ++  +   +   +   P  +   L   G
Sbjct: 64  PAHATIYLAILDMYGRDEPVDPITLTAELTRSG 96


>gi|326674234|ref|XP_687391.4| PREDICTED: myosin-XVIIIa [Danio rerio]
          Length = 2218

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 37/315 (11%), Positives = 93/315 (29%), Gaps = 21/315 (6%)

Query: 329  RAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKR 388
             A  K  + +   ++    +    L+   D D          +      ++  ++   KR
Sbjct: 1331 DAMKKQTESMEMEVMEARLIRASELNGEMDDDDTG-----GEWRLKYERAIREIEFTKKR 1385

Query: 389  ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
              +        E+       +   +   D +     +Q ++ + Q+L  +          
Sbjct: 1386 LQQEFDDKLEVEQQNKRQLERKLTDLQADNEEVQRVAQQLKKKCQRLTAELQDTKLHLEG 1445

Query: 449  YWKKNARHRDQKGP---SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
               +N     ++      Q   Q  + + K  ++   RE  +L           E +   
Sbjct: 1446 QQSRNHDLEKKQRKFDSEQTQAQEEVQREKSQREKLSREKDMLT---------GEVFSLR 1496

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
              +   + E+  +   L     E +    +E           + L+ L+ +V+D      
Sbjct: 1497 QQLEDKDLEICAVNLKLEQMEAELQDLNSQESKDEASLAKIKKQLRDLEAKVKDQEEELD 1556

Query: 566  TTEANI---VDVRQGYQQALALYKRFRLLSRQKEEIE-KQIAQVTAKGEAEKTAILISIL 621
                 I      +   +  +   ++      + +E E ++I Q  +K   +    L    
Sbjct: 1557 EQAGTIQMLEQAKLRLEMEMERLRQTHSKEIESKEDEVEEIRQSCSKKLKQMEVQLEEEY 1616

Query: 622  HEVHIQIHQIESQEA 636
             +    + +    EA
Sbjct: 1617 EDKQKVLREKRDMEA 1631



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 65/183 (35%), Gaps = 13/183 (7%)

Query: 456  HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
             + ++   ++L +    K  L  +    +  +   +  H A + +  Q LA I       
Sbjct: 1721 SKSKQALEEQLSRLQREKNDLQSRMEEDQEDMNELMKKHKAAVAQSSQNLAQIS------ 1774

Query: 516  QKLWSFLFSDFVEQKYFLPE--EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
              L + L     E++    +   +  +L  +    + K L   V          E  +  
Sbjct: 1775 -DLQAQLEEAMKEKQDVQEKLTALQSQLEFQEQSMVDKSL---VSRQEAKIRELETKLEF 1830

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             +   ++  +L  R +    +  E E+     +   E E+   L+  + ++  ++ ++  
Sbjct: 1831 EKTQVKRLESLVARLKENLEKLTE-ERDQRSASENREKEQNKRLLRQIRDIKEEMAELAK 1889

Query: 634  QEA 636
            +EA
Sbjct: 1890 KEA 1892



 Score = 37.9 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 26/256 (10%), Positives = 83/256 (32%), Gaps = 12/256 (4%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
             +N+   +    A      K+    I+D  ++       +  L++   +   E +     
Sbjct: 1685 LKNQLEESEFTCAAAVKARKSMEVEIEDLHVQMDDISKSKQALEEQLSRLQREKNDLQSR 1744

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
             +++    ++     +   +     +   + S  +A L   +     + ++     + + 
Sbjct: 1745 MEEDQEDMNELMK--KHKAAVAQSSQNLAQISDLQAQLEEAMKEKQDVQEKLTALQSQLE 1802

Query: 510  YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
            +    +    S +     + +    +   ++   +    L+ +L   +           A
Sbjct: 1803 FQEQSMVD-KSLVSRQEAKIRELETKLEFEKTQVKRLESLVARLKENLEKLTEERDQRSA 1861

Query: 570  NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV-----TAKGEAEKTAILISILH-E 623
            +    ++   Q   L ++ R +  +  E+ K+ A+        + + E        L  +
Sbjct: 1862 SENREKE---QNKRLLRQIRDIKEEMAELAKKEAEASRKKHELEMDIESLEAANQSLQAD 1918

Query: 624  VHIQIHQIESQEAMIE 639
            + +   +I   +A IE
Sbjct: 1919 LKLAFKRIGDLQAAIE 1934


>gi|229019772|ref|ZP_04176575.1| hypothetical protein bcere0030_42720 [Bacillus cereus AH1273]
 gi|229025999|ref|ZP_04182383.1| hypothetical protein bcere0029_42850 [Bacillus cereus AH1272]
 gi|228735280|gb|EEL85891.1| hypothetical protein bcere0029_42850 [Bacillus cereus AH1272]
 gi|228741497|gb|EEL91694.1| hypothetical protein bcere0030_42720 [Bacillus cereus AH1273]
          Length = 786

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNDE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQIES 633
            +           EK          +  ++ Q+  
Sbjct: 565 RDEKLLKVQKEGEEKVEAAKKEAEGIIQELRQLRK 599


>gi|72388200|ref|XP_844524.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62358775|gb|AAX79229.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70801057|gb|AAZ10965.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 1692

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 75/222 (33%), Gaps = 15/222 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK---------GK 475
            + + ++L+ L     +E         +  + R Q+  S      +             +
Sbjct: 632 LRDLVEKLRDLADNQASELELLKLQKTQANQIRAQRNLSTFRGDDTAEPVYCVTLDELRE 691

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            ++     E  L         +L  Q   LA++   + E +KL +       E +     
Sbjct: 692 QTEHCDQVERELERQREQCQNLLNAQDDLLAELSGVSEEKEKLEAECERLEAELRQMEE- 750

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
               RL E+G  E+ ++L+ +  +        E     +        +         R+ 
Sbjct: 751 --KSRLSEQGLSEMTQRLEEKQAEIEGLLENLEQLDEQLEALRAAEKSAQAHIEARDREI 808

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEA 636
            ++++++       +  KT  L+  L + +  + ++ + QEA
Sbjct: 809 SDLQQRLE--GEIDDHIKTTALLEELRKHYNNLEELFDKQEA 848



 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 65/206 (31%), Gaps = 10/206 (4%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            ++L +  +    E+       +  A   ++      L  +   K     +    E   L 
Sbjct: 1204 EKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLA 1263

Query: 490  TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                   + + E  +   ++     E +KL   L     E +    E     L      +
Sbjct: 1264 ---EELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLAEEL---ELKAAENEK 1317

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L ++L+ +V +    +   E    +  +   + L L        +  EE+E + A+    
Sbjct: 1318 LAEELELKVAENEKLAEELELKAAE-NEKLAEELELKVAEN--EKLAEELELKAAENEKL 1374

Query: 609  GEAEKTAILISILHEVHIQIHQIESQ 634
             E  +     +      +++   E++
Sbjct: 1375 AEELELKAAENEKLAEELELKAAENE 1400



 Score = 38.3 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 65/206 (31%), Gaps = 10/206 (4%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            ++L +  +  + E+       +  A   ++      L  +   K     +    E   L 
Sbjct: 1050 EKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLA 1109

Query: 490  TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                   +   E  +   ++     E +KL   L     E +    E     L      +
Sbjct: 1110 ---EELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEEL---ELKAAENEK 1163

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L ++L+ +V +    +   E    +  +   + L L        +  EE+E + A+    
Sbjct: 1164 LAEELELKVAENEKLAEELELKAAE-NEKLAEELELKVAEN--EKLAEELELKAAENEKL 1220

Query: 609  GEAEKTAILISILHEVHIQIHQIESQ 634
             E  +     +      +++   E++
Sbjct: 1221 AEELELKAAENEKLAEELELKAAENE 1246



 Score = 37.9 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 67/216 (31%), Gaps = 16/216 (7%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            ++L +  +    E+       +  A   ++      L  +   K     +    E   L 
Sbjct: 1106 EKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLA 1165

Query: 490  TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                   + + E  +   ++     E +KL   L     E +    E   +        E
Sbjct: 1166 ---EELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAE 1222

Query: 549  LLK----QLDRQVRDAGLWSATTEANIVDVR------QGYQQALALYKRFRLLSRQKEEI 598
             L+    + ++   +  L +A  E    ++       +   + L L        +  EE+
Sbjct: 1223 ELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAEN--EKLAEEL 1280

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            E + A+     E  +  +  +      +++   E++
Sbjct: 1281 ELKAAENEKLAEELELKVAENEKLAEELELKAAENE 1316



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 64/216 (29%), Gaps = 16/216 (7%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            ++L +  +    E+       +      ++      L  +   K     +  + E   L 
Sbjct: 1302 EKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLA 1361

Query: 490  TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                   +   E  +   ++     E +KL   L     E +    E   +        E
Sbjct: 1362 ---EELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAE 1418

Query: 549  LLK----QLDRQVRDAGLWSATTEANIVDVR------QGYQQALALYKRFRLLSRQKEEI 598
             L+    + ++   +  L  A  E    ++       +   + L L        +  EE+
Sbjct: 1419 ELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAEN--EKLAEEL 1476

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            E + A+     E  +     +      +++   E++
Sbjct: 1477 ELKAAENEKLAEELELKAAENEKLAEELELKAAENE 1512



 Score = 37.6 bits (85), Expect = 6.2,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 66/216 (30%), Gaps = 16/216 (7%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            ++L +  +    E+       +      ++      L  +   K     +  + E   L 
Sbjct: 1274 EKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLA 1333

Query: 490  TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                   +   E  +   ++     E +KL   L     E +    E   +        E
Sbjct: 1334 ---EELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAE 1390

Query: 549  LLK----QLDRQVRDAGLWSATTEANIVDVR------QGYQQALALYKRFRLLSRQKEEI 598
             L+    + ++   +  L +A  E    ++       +   + L L        +  EE+
Sbjct: 1391 ELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAEN--EKLAEEL 1448

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            E + A+     E  +  +  +      +++   E++
Sbjct: 1449 ELKAAENEKLAEELELKVAENEKLAEELELKAAENE 1484



 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 75/271 (27%), Gaps = 15/271 (5%)

Query: 365  CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                             ++ L                             +++++L    
Sbjct: 920  RQQLQQANDERENLHDRLEQLMAENQSLSEQLHNMHEELEREERDRSGVTLQNERLAEEI 979

Query: 425  SQAIRDRLQQLFQKYITEHS-GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             +   +  Q + +   +           +      +   ++    +  ++ K ++   L 
Sbjct: 980  QRKTAENEQLVLENNKSRSDIRNLNVQVQRLMEELELKAAENEKLAEELELKAAENEKLA 1039

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E   L         + E  +   ++     E +KL   L     E +    E     L  
Sbjct: 1040 EELELK--------VAENEKLAEELELKVAENEKLAEELELKAAENEKLAEEL---ELKA 1088

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                +L ++L+ +  +    +   E    +  +   + L L  +     +  EE+E + A
Sbjct: 1089 AENEKLAEELELKAAENEKLAEELELKAAE-NEKLAEELEL--KAAENEKLAEELELKAA 1145

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +     E  +     +      +++   E++
Sbjct: 1146 ENEKLAEELELKAAENEKLAEELELKVAENE 1176



 Score = 37.2 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 66/216 (30%), Gaps = 16/216 (7%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            ++L +  +    E+       +  A   ++      L  +   K     +    E   L 
Sbjct: 1134 EKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLA 1193

Query: 490  TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                   + + E  +   ++     E +KL   L     E +    E   +        E
Sbjct: 1194 ---EELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAE 1250

Query: 549  LLK----QLDRQVRDAGLWSATTEANIVDVR------QGYQQALALYKRFRLLSRQKEEI 598
             L+    + ++   +  L  A  E    ++       +   + L L        +  EE+
Sbjct: 1251 ELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAEN--EKLAEEL 1308

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            E + A+     E  +  +  +      +++   E++
Sbjct: 1309 ELKAAENEKLAEELELKVAENEKLAEELELKAAENE 1344


>gi|114332335|ref|YP_748557.1| replicative DNA helicase [Nitrosomonas eutropha C91]
 gi|114309349|gb|ABI60592.1| primary replicative DNA helicase [Nitrosomonas eutropha C91]
          Length = 465

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 10/130 (7%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           KL       E ++L  L+       +    + +  +   + Q ++  +     + K    
Sbjct: 19  KLPPHSIEAEQSVLGGLMLDNQAWDKVADIIIESDFYRQDHQLIYQHICRLIEQSKPADV 78

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L          QL      A + +           + Y + +    R R + R+
Sbjct: 79  ITVAESLENA------AQLQHAGGLAYIGAIAQNTPSAANIRRYAEIV----RERSIMRK 128

Query: 595 KEEIEKQIAQ 604
             ++  QI  
Sbjct: 129 LAQVSTQITD 138


>gi|149472055|ref|XP_001516432.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 873

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 96/283 (33%), Gaps = 38/283 (13%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             R     A       +L       KR  +        + A+LE  L      ++D+ LR
Sbjct: 80  QARLKDLEALLNSKEAALSTALSE-KRTLDGELHELRGQVAKLEAALGEAKKQLQDEMLR 138

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                   +RLQ L ++   + + Y    ++  R  + +       +    + KL+    
Sbjct: 139 RV---DAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDSGKQREFENKLADALQ 195

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLPEEIH 538
                          +  +   ++   +    +L+K +S    +     E+   L    H
Sbjct: 196 --------------DLRAQHEDQVDQYK---KDLEKTYSAKLDNARQSAERNSNLAGAAH 238

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           + L +      +  L  Q+       A  EA + D+     +     +R         E 
Sbjct: 239 EELQQTRIR--IDSLSAQLSQLQKQLAAREAKLRDLEDALARERDTSRRL------LSEK 290

Query: 599 EKQIAQVTAKGEA--EKTAILISILHEVHIQIHQ----IESQE 635
           E+++A++ A+ +   ++   L+ I   + ++IH     +E +E
Sbjct: 291 EREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEE 333


>gi|147678457|ref|YP_001212672.1| ATPase with chaperone activity, ATP-binding subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146274554|dbj|BAF60303.1| ATPase with chaperone activity, ATP-binding subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 871

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 76/212 (35%), Gaps = 16/212 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++K+I + +   R ++           +  +++    K ++     +++AAL+   +   
Sbjct: 319 YRKHIEKDAALERRFQPVYVGEPGVEDTIAILRGLKEKYEVHHGVRIKDAALVAAAMLSH 378

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S   E            + ++           
Sbjct: 379 RYISDRFLPDKAIDLVDEAASRLRIEIDSMPTEIDEIDRRIRQLEIEKQALA------KE 432

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           Q + +       E  +  ++   +     +++ + L +   EI+++I +     +A +  
Sbjct: 433 QDKGSQERLQKIEGELAALKSRLEDLKEHWRKEKELIQSIREIKERIEETRLAEQAAERE 492

Query: 616 ILI---SILH-----EVHIQIHQIESQEAMIE 639
             +   + L      E++ ++   ++ E + E
Sbjct: 493 ADLGKVAELRYGVMPELNRRLQ--QNNEKLAE 522


>gi|124487429|ref|NP_001074580.1| TATA element modulatory factor [Mus musculus]
          Length = 1091

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 95/275 (34%), Gaps = 16/275 (5%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              +   KT  E+L             +E + +     +E  +L     +  N IK  + 
Sbjct: 520 DAAKKEMKTIKEELATRLNSSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRA 579

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +   ++ +  +L +  ++   E              +   G  +   Q      KL+   
Sbjct: 580 KDKDNENVIAKLNRKAKELEEELQHL---------RQVLDGKEEVEKQHRENIKKLNSVV 630

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             +E  L    ++   + ++     A +   ++  ++L     ++  +        + + 
Sbjct: 631 ERQEKDLGRLQVDMDELEEKSRSTQAAL---DSAYRELTDLHKANAAKDSEVQEAALRRE 687

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIE 599
           +  +   EL   L++   +A          + D+R   Q+A  A  ++   L  +  E++
Sbjct: 688 MKAK--EELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQ 745

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +++ +   +   E +  + S    +  QI  +++ 
Sbjct: 746 QRLQEAENR-NQELSQSVSSTARPLLRQIENLQAT 779


>gi|163845788|ref|YP_001633832.1| hypothetical protein Caur_0190 [Chloroflexus aurantiacus J-10-fl]
 gi|222523496|ref|YP_002567966.1| hypothetical protein Chy400_0202 [Chloroflexus sp. Y-400-fl]
 gi|163667077|gb|ABY33443.1| conserved hypothetical protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447375|gb|ACM51641.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
          Length = 303

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 69/211 (32%), Gaps = 13/211 (6%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
              ++E + +               P+QR   S        +     E A+   +I + +
Sbjct: 31  GAMMSEQTSFVAMPTPAPMLSGAPVPAQRDTASFAGGVSSGESAIGSEVAVQRLIIKNAS 90

Query: 497 ILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
           I  E    LA  +    + + L  F+     +   +      I  R+    F  +L+  +
Sbjct: 91  IALEVADVLAAEQALRQKAEALGGFVASVETYGSGEDL-RATIVLRVPVEHFEAVLRDAE 149

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
               +    S     +  DV + Y    A  +     + +  ++   +++     +A   
Sbjct: 150 GLASNVLRRSV----SGSDVTEEYVDLEARLRNLEATNARLLDL---LSRAQNVNDALMV 202

Query: 615 AILISILHEVHIQIHQIESQEAMIEGFGKMS 645
                 L E+  QI +I+ +   +E    MS
Sbjct: 203 N---QALTEIQEQIERIKGRMQYLEQSAAMS 230


>gi|297481405|ref|XP_002692090.1| PREDICTED: kinesin family member 16B [Bos taurus]
 gi|296481545|gb|DAA23660.1| kinesin family member 16B [Bos taurus]
          Length = 1339

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 61/198 (30%), Gaps = 24/198 (12%)

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
           ++ N      K   +R               S     L   ++ +P +  E+ Q     +
Sbjct: 593 FRFNHPKEAAKLREKRKSGLLSSLSLSMSDLSKSRENLSAVMLYNPGLEFERQQREELEK 652

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEI---------------HQRLCERGFGELLKQLD 554
            ++         L  +  E++      +                 +   R   E LK+  
Sbjct: 653 LESKR------KLIEEMEEKQKSDKAALERMQQEVETQRQETEMAQRQIRKQEESLKRRS 706

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR--QKEEIEKQIAQVTAKGEAE 612
             +          +    + RQ  QQ   L K+ +   R  + +E  +++ ++ +  +AE
Sbjct: 707 SHLESTLKDLLAEKERFEEARQREQQETELQKKKQEEERFLRVQEELQRLQELNSHEKAE 766

Query: 613 KTAILISILHEVHIQIHQ 630
           K   +   L  +  +  +
Sbjct: 767 KVQ-IFQELERLKREKEE 783


>gi|237756597|ref|ZP_04585115.1| chaperone protein ClpB [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691243|gb|EEP60333.1| chaperone protein ClpB [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 994

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 8/137 (5%)

Query: 505 LADIRYDNNELQKL-----WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +   ++ +  +  L        L   +   +    E   + L E+     L     +   
Sbjct: 518 IPARKFPDKAIDALDQACARKKLKLVYASPEVIELERKIKMLDEQIIQASLDGDYEKEAK 577

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
             +  A  E  + D++    ++     +   L RQ EEIEKQI   + KG+ EK A    
Sbjct: 578 LKIEKANLEKQLKDLKA---KSSNERTKLEELQRQLEEIEKQIEFYSQKGDYEKEAEYKI 634

Query: 620 ILHEVHIQIHQIESQEA 636
              ++  +I  ++ + A
Sbjct: 635 KKAQIEKEIKALQQKLA 651



 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 66/217 (30%), Gaps = 18/217 (8%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y     +R++ L  +   + +      + +      KG         L       +  + 
Sbjct: 389 YRGEFEERMKSLIDELKKDPNIILFIDELHTIVGAGKGEGASDAGQLLKPALARGEIRVI 448

Query: 484 EAALL----LTLINHPAI---LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            A  L      +   PA+    Q  Y E  DI      L+ L   L              
Sbjct: 449 GATTLDEYRKYIEKDPALERRFQPVYVEEPDIDTTIEILKALRPKLEKHHN--------- 499

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
              ++ ++      K   R +          +A      +   + +        L R+ +
Sbjct: 500 --VKISDKAIEAAAKLTGRYIPARKFPDKAIDALDQACARKKLKLVYASPEVIELERKIK 557

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +++QI Q +  G+ EK A L      +  Q+  +++
Sbjct: 558 MLDEQIIQASLDGDYEKEAKLKIEKANLEKQLKDLKA 594


>gi|197294195|ref|YP_001798736.1| Replicative DNA helicase [Candidatus Phytoplasma australiense]
 gi|171853522|emb|CAM11372.1| Replicative DNA helicase [Candidatus Phytoplasma australiense]
          Length = 427

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 53/160 (33%), Gaps = 27/160 (16%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E ALL TL+ +P  +      +    + N + + ++  +    ++ +      +   L 
Sbjct: 4   AERALLGTLLLNPEKMDAVINLVNTNNFSNPKHRCIFETMKRLKLQNREIDYVTVGSVLD 63

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
              +   +  +D  +    +      A   +  + Y   +      R L    +++  ++
Sbjct: 64  NNLYK--IGGIDYLIELVEM------APASEYLETYIDLIKENALKRDLLGLIKKLPTEL 115

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           +         K+  + + L  V  Q          +EGF 
Sbjct: 116 S---------KSKNIHNYLQTVKNQ----------VEGFM 136


>gi|146086892|ref|XP_001465676.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134069775|emb|CAM68102.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
          Length = 2064

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 88/286 (30%), Gaps = 19/286 (6%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                   +    +    +  +      R+ E    +  ++  E E   ++      D   
Sbjct: 1455 DAELADLREQLREAEERARDVEAQQCDRDAELA--DLREQLREAEERTRDVEAQQCD--- 1509

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R      +R++L++  ++     +       + A  R+Q   ++   +    +       
Sbjct: 1510 RDAEVADLREQLREAEERARDVEAQQCDRDAEVADLREQLREAEERARDVEAQQCDRDAE 1569

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                   L          +E+ +++   + D + E+  L   L       +    ++  +
Sbjct: 1570 VADLREQLRE-------AEERARDVEAQQCDRDAEVADLREQLREAEERARDVEAQQCDR 1622

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV----RQGYQQALALYKRFRLLSRQK 595
                    ELL    R+   +G      E  + D     R+  +Q      R   L  + 
Sbjct: 1623 DAELERVKELLSSSMREAECSGEIRGALEDQLEDAAREIRELREQLAVAQVRREALDAEL 1682

Query: 596  EEIEKQIAQVTAKGEAEKTAILIS--ILHEVHIQIHQIESQEAMIE 639
             ++ +Q+ +   +    +         + ++  Q+ + E +   +E
Sbjct: 1683 ADLREQLREAEERARDVEAQQCDRDAEVADLREQLREAEERTRDVE 1728



 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 44/134 (32%), Gaps = 6/134 (4%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
            + E+  L   L       +    ++  +        ELL    R+   +G      E  +
Sbjct: 1119 DAEVADLREQLREAEERTRDVEAQQYDRDAELERVKELLSSSMREAECSGEIRGALEDQL 1178

Query: 572  VDV----RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS--ILHEVH 625
             D     R+  +Q      R   L  +  ++ +Q+ +   +    +         + ++ 
Sbjct: 1179 EDAAREIRELREQLAVAQVRREALDAELADLREQLREAEERARDVEAQQCDRDAEVADLR 1238

Query: 626  IQIHQIESQEAMIE 639
             Q+ + E +   +E
Sbjct: 1239 EQLREAEERARDVE 1252


>gi|117925550|ref|YP_866167.1| hypothetical protein Mmc1_2260 [Magnetococcus sp. MC-1]
 gi|117609306|gb|ABK44761.1| hypothetical protein Mmc1_2260 [Magnetococcus sp. MC-1]
          Length = 814

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 79/265 (29%), Gaps = 14/265 (5%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQAIRDRLQQL 435
            +          E E        E              ++ DQ L+    Q I DR+ +L
Sbjct: 138 HARDEHPSKHANEAERVKKAHETESRLRRQEQALVNKQLRFDQDLQR--LQQITDRVIKL 195

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT---LI 492
            Q                   +            +L +         REA+L+ T   L 
Sbjct: 196 EQNLQVALKEATDKALSAEHSQSHDVALTARQMKALAERAQE--IRNREASLMATEVRLA 253

Query: 493 NHPAILQEQYQELADIRYDNNELQ-KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           +    L E+  +L         LQ +      +    +K     EI     ++      +
Sbjct: 254 HQIDYLAEKEAKLTQYELHQINLQTQFAERFAALRTREKATERLEIRIHAEQQIRENAFQ 313

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI--AQVTAKG 609
              +    A L  A     + +++     A    ++     +  ++ ++Q+    +  K 
Sbjct: 314 ---KHKETADLLDAQLNKRVEELKTRALDAQNSEQKLATHQQLLDKQQEQVETRSLEQKR 370

Query: 610 EAEKTAILISILHEVHIQIHQIESQ 634
           +AE  A   + L E    ++ ++ Q
Sbjct: 371 DAEHLAAYENRLREKEESLNSLKHQ 395


>gi|323343441|ref|ZP_08083668.1| DNA primase [Prevotella oralis ATCC 33269]
 gi|323095260|gb|EFZ37834.1| DNA primase [Prevotella oralis ATCC 33269]
          Length = 303

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 13/42 (30%)

Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
               +     P   EK  SF  N     +Y F     G+ +
Sbjct: 24 KQYGVNLMYLSPLRTEKHASFKVNTEINQWYDFGIGRGGNII 65


>gi|315607214|ref|ZP_07882218.1| DNA primase [Prevotella buccae ATCC 33574]
 gi|315251268|gb|EFU31253.1| DNA primase [Prevotella buccae ATCC 33574]
          Length = 303

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 13/42 (30%)

Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74
               +     P   EK  SF  N     +Y F     G+ +
Sbjct: 24 KQYGVNLMYLSPLRTEKHASFKVNTEINQWYDFGIGRGGNII 65


>gi|239907337|ref|YP_002954078.1| replicative DNA helicase [Desulfovibrio magneticus RS-1]
 gi|239797203|dbj|BAH76192.1| replicative DNA helicase [Desulfovibrio magneticus RS-1]
          Length = 484

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 46/170 (27%), Gaps = 16/170 (9%)

Query: 448 RYWKKNARHRDQKGPSQRLMQ-----SSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
           R   +NAR            Q     SS V  K+  +    E ++L  ++   A L    
Sbjct: 5   RKKPRNARAAGSGSGEPLTGQALERVSSDVLRKVPPQNLEAEQSVLGGILLKNATLFNLV 64

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLKQ 552
             + +  + +   + ++  +              + + L   G            EL   
Sbjct: 65  DVIGEDDFYSPAHRFIYQAILDLARRNAPVDLVSLAEALRASGKLDEVGGPAYLAELASA 124

Query: 553 LDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                  A       E ++   +       ++        + Q  +  +Q
Sbjct: 125 TVSAANAAHHAEIVREKSVQRRLISTAVDIISSCYEGAQTTEQLLDASEQ 174


>gi|242800288|ref|XP_002483556.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218716901|gb|EED16322.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 776

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 83/289 (28%), Gaps = 17/289 (5%)

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAF----EKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
                 +   DP           +      L+  S         R +++  F +P+  + 
Sbjct: 178 YRPASDNNSYDPSDSDEAIPLDDYTMGDSMLMSSSPAFRRHHDGRSSDSDHFPSPEPFSP 237

Query: 404 LE-IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
           +      N    I D       +  + + L    +K   +     R     +  +     
Sbjct: 238 ITPTAGSNTEYLIVDDHPSEELAS-VAEELAAA-RKEKQDLFIEWRKLHSQSSAQPGADD 295

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           +              +    +E+ L          L+   +EL  + +    +  + S +
Sbjct: 296 TDPPADFMKQIVPQLEAAIRKESDL-------RQTLKTAQEELTSMGFSGPNMHAILSEI 348

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            S F   +    E I       G  +    L   V                         
Sbjct: 349 RSAFATAR-LELENIVPGETAAGLFDCKATLKALVDRLRQIGGALLTERRRADSAADSHR 407

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVT--AKGEAEKTAILISILHEVHIQIH 629
            L ++F+   +++++++K++ +     +  AE T  L + L E+  +I 
Sbjct: 408 LLTEKFQEALKERDDVQKKLKRSEESPERNAEDTLHLRTRLQELEEEIR 456


>gi|74025566|ref|XP_829349.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70834735|gb|EAN80237.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 1299

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 94/267 (35%), Gaps = 24/267 (8%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKD-QKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
            +E   +  +    ++ LE  LK     + D    +    + +R +L  +     +     
Sbjct: 754  KELRKQPSDVTGSKSSLEKELKELRKQLSDVADSKSSLEKELRKQLSDVAGSKSSLEKEP 813

Query: 447  GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH---------PAI 497
                K+ +     K   ++ ++  L     SK    +E   L   ++            +
Sbjct: 814  DELKKQLSDVAGSKSSLEKELRKQLSDVAGSKSSLEKELKELRKQLSDVAGSKSSLEKEL 873

Query: 498  LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQ 552
             ++             EL++L   L      +     E + ++L +         + LK+
Sbjct: 874  RKQLSDVAGSKSSLEKELKELRKQLSDVADSKSSLEKE-LRKQLSDVAGSKSSLEKELKE 932

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
            L +Q+ D     ++ E  + ++R+              L ++ +E+ KQ++ V     A+
Sbjct: 933  LRKQLSDVADSKSSLEKELKELRKQLSDVAGS---KSSLEKELKELRKQLSDV-----AD 984

Query: 613  KTAILISILHEVHIQIHQIESQEAMIE 639
              + L   L E+  Q+  +   ++ +E
Sbjct: 985  SKSSLEKELKELRKQLSDVAGSKSSLE 1011


>gi|332028616|gb|EGI68651.1| Serine/threonine-protein kinase MRCK beta [Acromyrmex echinatior]
          Length = 1850

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 106/344 (30%), Gaps = 35/344 (10%)

Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF-IRCYGKTAFEKLI 375
           I      D        +   LV       N  +    S G  PDS       +     L 
Sbjct: 460 ISALSQTDKRIQILEEENTRLVQTIDDMKNHSSISHSSPGISPDSNNATRKLQDEINTLT 519

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             +  L   L   +         +        L+  +  ++ +K      +AI+D+L   
Sbjct: 520 KRNCELESQLKSMDIPRELRTLDNGDMMKYRELEKLVRCLRSEKE-----EAIKDKLDAQ 574

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL---- 491
            +  + +        ++     +    S +L +    K KLS++   +E  L + +    
Sbjct: 575 EKLKLQDKELKDALTQRKLAMTEYTEVSDKLSELRQQKQKLSRQVRDKEEELEVAMQKVD 634

Query: 492 -INHP-----AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            + H       + +E    + +   + ++ +KL         + +  + +   + L    
Sbjct: 635 TLRHDIRKAEKLRRELENRIDEAMAETSKERKLRERSEEYCKQMQEEMEKIRQRSLGNDA 694

Query: 546 FG------ELLKQLDRQVRDAGLWSATTEANIV-----DVRQGYQQALALYKRFRLLSRQ 594
                   + + +L  +V    +               ++R   +Q      R  LL R+
Sbjct: 695 SANHALATQEINRLKAEVEKLEVQYNENLTQQQSRFNLEIRSLQEQLHEAETRRELLERE 754

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            +  ++++     +   +    +         ++++   +E +I
Sbjct: 755 VQLTKEKLDAARLENITDSEETI--------NELNRRHERERII 790


>gi|313233858|emb|CBY10027.1| unnamed protein product [Oikopleura dioica]
          Length = 7320

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/326 (8%), Positives = 93/326 (28%), Gaps = 48/326 (14%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P++          E     ++   +    +     +    D          +    ++++
Sbjct: 6578 PEALTDDIDGEVAEVNKAATVSAEEAKIAQLENEFNEKISDINKSSCRDADDLDEQLRNR 6637

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             L     + ++ R+ ++ +    +            +   ++  +    +       +S 
Sbjct: 6638 NLADDMIKDLKIRMAKVEKNRQRQIKAAIALRTAKLQAAKRRKATAEASEVMQSMANISD 6697

Query: 479  KPSLREAALLLTLINH------------PAILQEQYQELADIRYDNN-ELQKLWSFLFSD 525
               + E  +   ++                +     QE+ D+   +  E++       ++
Sbjct: 6698 LGDITEEDIRNQILEEVTNGKDANQAVKDVLQARHRQEILDMSRRHQCEIEAAKKIALNE 6757

Query: 526  FVEQKYFLPEEIHQR------------LCERGFGELLKQL-----------DRQVRDAGL 562
              + +Y     I ++            + +  +     +L           D +    G 
Sbjct: 6758 ARDARYLDRNAIVEQFDRDVLELSTKDIDDAEYDNEFTRLKAQLTAELKAFDEETERLGD 6817

Query: 563  WSATTEANIVDVRQGYQQALALYKRFRLLSRQKE----------EIEKQIAQVTAKGEAE 612
               + +   +DV+Q  +    L ++   +  +            E+E+   +   K +A+
Sbjct: 6818 RIFSEKRKGLDVKQSAEHLGLLERQLSQIDEEIRKCTSDAQIQYELEQNRLKAQQKHQAD 6877

Query: 613  KTAILISILHEVHIQIHQIESQEAMI 638
                      E   ++   + QE ++
Sbjct: 6878 MDEAARQKAIEEERRLR--KQQEDLL 6901


>gi|225464348|ref|XP_002272127.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2856

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG------ELLKQLDRQVRD 559
              +    N+   + + +  D  +       ++   L E+         EL+ Q+ +    
Sbjct: 2395 ERLLLAVNDFASMQTEILDDSQKDMKARIADLQTELQEKDIQKERICMELVSQIRQAEAT 2454

Query: 560  AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-- 617
            A  +S   ++    V    +Q   + K    L ++ ++++    +  +K   EK   L  
Sbjct: 2455 ALGYSTDLQSANTQVHDLEKQVEVMEKERNALEQRIKDLQD--GEAASKELQEKVKSLAD 2512

Query: 618  --ISILHEVHIQIHQIESQEAMIE 639
               +   E+   +  ++ +EA +E
Sbjct: 2513 VVAAKEQEIEALMQALDEEEAQME 2536


>gi|254448917|ref|ZP_05062372.1| methyl-accepting chemotaxis protein [gamma proteobacterium
           HTCC5015]
 gi|198261454|gb|EDY85744.1| methyl-accepting chemotaxis protein [gamma proteobacterium
           HTCC5015]
          Length = 691

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/228 (9%), Positives = 67/228 (29%), Gaps = 23/228 (10%)

Query: 421 RYYYSQAI------RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           +  Y   +      ++ L          +    +   +  R       ++      + + 
Sbjct: 55  QELYIAFLELRQQQKEYLNAGSADIPDSYKKRSQQLVQRLRQLSTPEVTEDSASDRVTEA 114

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                  L E              +  ++ L    ++    + L   +     +      
Sbjct: 115 SEVAAAQLAEF----------ETARSIFESLGQNNFEGVRGKAL-QAILEAQSQVDSASK 163

Query: 535 --EEIHQRLCERGFGELL-KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--FR 589
               +  +L       L+    ++    +     T +  + D+     +A+    +    
Sbjct: 164 RLSGVSTQLQRSVLNPLMYSDSEQYAERSREAFETFQKALNDLEADVAEAVVSSLQGPIE 223

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           LL ++  ++++   Q+ A    + +  L  +  E+  Q++Q  +  A+
Sbjct: 224 LLQQKSTQLQQSQRQLEAT-SQQLSDWLSRLRAELKEQLNQERAHLAL 270


>gi|296083792|emb|CBI24009.3| unnamed protein product [Vitis vinifera]
          Length = 1176

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG------ELLKQLDRQVRD 559
             +    N+   + + +  D  +       ++   L E+         EL+ Q+ +    
Sbjct: 715 ERLLLAVNDFASMQTEILDDSQKDMKARIADLQTELQEKDIQKERICMELVSQIRQAEAT 774

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-- 617
           A  +S   ++    V    +Q   + K    L ++ ++++    +  +K   EK   L  
Sbjct: 775 ALGYSTDLQSANTQVHDLEKQVEVMEKERNALEQRIKDLQD--GEAASKELQEKVKSLAD 832

Query: 618 --ISILHEVHIQIHQIESQEAMIE 639
              +   E+   +  ++ +EA +E
Sbjct: 833 VVAAKEQEIEALMQALDEEEAQME 856


>gi|254585629|ref|XP_002498382.1| ZYRO0G08910p [Zygosaccharomyces rouxii]
 gi|238941276|emb|CAR29449.1| ZYRO0G08910p [Zygosaccharomyces rouxii]
          Length = 1121

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 31/346 (8%), Positives = 91/346 (26%), Gaps = 27/346 (7%)

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380
            DG++      +   ++    L        +     +            A  +++    P
Sbjct: 172 NDGNNRNKSKKHTPPEVYPQMLALPISRRPLFPGFYK-AVVISDDRVMKAIREMLDRQQP 230

Query: 381 LVDMLWKRETENRSFNTPDERAEL-EIHLKNCINHIKDQKLR---YYYSQAIRDRLQQLF 436
            +     + +E+ S                   +    +  +      +  +    +   
Sbjct: 231 YIGAFMLKNSESDSDVIHSTDEVYDVGVFAQITSAFPSKDEKTGTETMTALLYPHRRIKI 290

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT------ 490
              +           +  +    +          + + K   +      A+         
Sbjct: 291 DSLLAPKGDAKGTPAEAPQESKDETAEVTTETQDVNESKTVAETDSNAQAVTTLEEEDLN 350

Query: 491 ---LINHPAILQEQYQELADIRYD--NNELQKLWSFLFSDFVEQKYFL------PEEIHQ 539
               + +  +       L D  ++  +  +  L S +   F E                 
Sbjct: 351 PTEFLKNYDVSLVNVSNLEDDPFERKSPVVNALTSEILKVFKEISQLNSMFREQIATFSA 410

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK--EE 597
            +       + ++  R    A   SA  E  + ++ +       L K   +L ++    E
Sbjct: 411 SIQSAT-TNIFEEPARLADFAAAVSAGEEDELQEILESLNIEQRLEKSLLVLKKELMNAE 469

Query: 598 IEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQEAMIEGF 641
           ++ +I++       ++     L+  L  +  ++   + +  MIE F
Sbjct: 470 LQNKISKDVETKIQKRQREYYLMEQLKGIKRELGIDDGRAKMIETF 515


>gi|238909825|ref|ZP_04653662.1| Putative prophage primase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 918

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 90/345 (26%), Gaps = 57/345 (16%)

Query: 41  ACCPFHDEKTPSFHCNDS-KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99
           A CP     T  F  +D+ +G + C  C   GD L  +  +  C   E+ +  A + G+ 
Sbjct: 37  APCPACGG-TDRFRFDDNGRGSFICNQCGA-GDGLDLIKKVNNCDTTEAAKMAAEVLGID 94

Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159
               +       + +  L                            +R       +   +
Sbjct: 95  YRAAETDPAAASQRREQL--------------------------EADRQQREQERQKQAV 128

Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219
           G A   R +          +  +     L   G             L+  +    G V+A
Sbjct: 129 GDAEQRRTTFTRLYAGMRQNVTQGESDYLQSKGLTGFNYPVMPDGSLLLELVDESGAVVA 188

Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279
                  +G       S +   +      Y                        +++ EG
Sbjct: 189 AQ-TITPQGGKRLLTGSAKRGAY------YGVN--------------ALERPQSVVIAEG 227

Query: 280 YMDVLSLCQAGVQNVVSSLGTA---LTEYQLRLLWKLSPRIVLCFDGDDP-GLRAAYKAI 335
               L+        +  +   A   L   ++        +I++  D D   G     K  
Sbjct: 228 LATALTCHLIRTDALTVAAIDAGNLLPVAEVMRRKYPQAQIIIAADNDHHEGQANTGKDA 287

Query: 336 DLVLCHLIPGNRVNFVLLSRGE-DPDSFIRCYGKTAFEKLIVESL 379
                  + G     +  +  + D D + +  G  A      +S+
Sbjct: 288 AEKAALSVAG--WISLPPTDHKADWDDYRQQNGLKAATAAFNDSM 330


>gi|228910376|ref|ZP_04074191.1| hypothetical protein bthur0013_45230 [Bacillus thuringiensis IBL
           200]
 gi|228849142|gb|EEM93981.1| hypothetical protein bthur0013_45230 [Bacillus thuringiensis IBL
           200]
          Length = 786

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNDE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQIES 633
            +           EK          +  ++ Q+  
Sbjct: 565 RDEKLLKAQKEGEEKVEAAKKEAEGIIQELRQLRK 599


>gi|228967649|ref|ZP_04128670.1| hypothetical protein bthur0004_44420 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792025|gb|EEM39606.1| hypothetical protein bthur0004_44420 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 786

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNDE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQIES 633
            +           EK          +  ++ Q+  
Sbjct: 565 RDEKLLKAQKEGEEKVEAAKKEAEGIIQELRQLRK 599


>gi|293332375|ref|NP_001168289.1| hypothetical protein LOC100382053 [Zea mays]
 gi|223947243|gb|ACN27705.1| unknown [Zea mays]
          Length = 826

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 102/357 (28%), Gaps = 23/357 (6%)

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
               +        WK + R VL                 L            +V      
Sbjct: 52  CAVGIGTGSGSQEWKDNLRWVLAALAPRRSSSRCLVLAHLRRPTSRINIMGAWV------ 105

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
            P S +      A+ +L  E +  V        +++  N        +   +  +  + D
Sbjct: 106 -PVSQLAEEEVAAYRQLEEERIGKVLDDLVELCQSQKVNASKIVIASDDIGRGLVQLVDD 164

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR-----DQKGPSQRLMQSSLV 472
             +      A  DR      +           WK N   +            R       
Sbjct: 165 HGVTELVMGAASDRAYSRKMRTPRSKKALTVQWKANPSCKIWFLCRGNLICTREASEGQA 224

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
             +     +   +    +  + PA      ++ A     +    +L   +  D  E    
Sbjct: 225 HSRAESSTASTSSRSSTSGYSTPAARDRSIEDQAVGTL-DGAAVQLLQEIEEDRPETPTS 283

Query: 533 LPEEIHQRLCERGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
              E+   L ++    L   + L  +  +        E  + +  +   +A    +R   
Sbjct: 284 DAGEMDDALYDKLKRALMEAESLKHEAYEETRRRQMAERELAEASRMADEAERSNQRE-- 341

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
            +R ++E+E+ +A+  A  E ++       L ++  +I +++ + A +E     S R
Sbjct: 342 -ARHRKEVEEMVARERAAIEQDR-----RELDDILEKIRKVDDRSAELELQITSSER 392


>gi|238055365|sp|B9EKI3|TMF1_MOUSE RecName: Full=TATA element modulatory factor; Short=TMF; AltName:
           Full=Androgen receptor coactivator 160 kDa protein;
           AltName: Full=Androgen receptor-associated protein of
           160 kDa
 gi|223462447|gb|AAI50932.1| TATA element modulatory factor 1 [Mus musculus]
          Length = 1091

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 95/275 (34%), Gaps = 16/275 (5%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              +   KT  E+L             +E + +     +E  +L     +  N IK  + 
Sbjct: 520 DAAKKEMKTIKEELATRLNSSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRA 579

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +   ++ +  +L +  ++   E              +   G  +   Q      KL+   
Sbjct: 580 KDKDNENVIAKLNRKAKELEEELQHL---------RQVLDGKEEVEKQHRENIKKLNSVV 630

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             +E  L    ++   + ++     A +   ++  ++L     ++  +        + + 
Sbjct: 631 ERQEKDLGRLQVDMDELEEKSRSTQAAL---DSAYRELTDLHKANAAKDSEVQEAALRRE 687

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIE 599
           +  +   EL   L++   +A          + D+R   Q+A  A  ++   L  +  E++
Sbjct: 688 MKAK--EELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQ 745

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +++ +   +   E +  + S    +  QI  +++ 
Sbjct: 746 QRLQEAENR-NQELSQSVSSTARPLLRQIENLQAT 779


>gi|120436611|ref|YP_862297.1| chaperone ClpB [Gramella forsetii KT0803]
 gi|117578761|emb|CAL67230.1| chaperone ClpB [Gramella forsetii KT0803]
          Length = 868

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 68/202 (33%), Gaps = 3/202 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++K          +  +++    K +   K  +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQKVIVEEPDTESAISILRGIKEKYETHHKVRIKDEAIIAAVELSQ 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             +  ++     I   +    KL   + S   E      + +   +          +   
Sbjct: 377 RYITNRFLPDKAIDLMDEAASKLRMEINSKPEELDVLDRKIMQLEIEIEAIKREKDEAKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           +   + L +   E N  D+   +     +    +      EE + +  +   +G+  K A
Sbjct: 437 KSLRSDLANLKEERN--DLHARWMSEKDVVDNIQTAKSDIEEFKLEAERAEREGDYGKVA 494

Query: 616 IL-ISILHEVHIQIHQIESQEA 636
            +    + E   ++ +++ Q A
Sbjct: 495 EIRYGKIKEAQEKLEKLQQQVA 516


>gi|157111097|ref|XP_001651388.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti]
 gi|108878534|gb|EAT42759.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti]
          Length = 1945

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/260 (11%), Positives = 83/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1575 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1634

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1635 NKANAEAQKNIKRYQQQLKDVQSALEEEQRARDDAREQLGISER-------RANALQNEL 1687

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE----EIHQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1688 EESRTLLEQADRGRRQAEQELSDAHEQLNEVSAQNASIAAAKRKLESELQTLHSDLDELL 1747

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +T  L
Sbjct: 1748 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDDAETNAL 1807

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++ES+
Sbjct: 1808 KGGKKAIQKLEQRVRELESE 1827



 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 40/329 (12%), Positives = 95/329 (28%), Gaps = 23/329 (6%)

Query: 329  RAAYKAIDLVLCHLIPGNRVNFVLLSRGED-PDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
                + ID  +               R  D   + +    K   E L ++     D+   
Sbjct: 1568 SQVRQEIDRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINEL 1627

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA-------IRDRLQQLFQKYI 440
                + +     E  +     +  +  ++        ++        I +R     Q  +
Sbjct: 1628 EIALDHANKANAEAQKNIKRYQQQLKDVQSALEEEQRARDDAREQLGISERRANALQNEL 1687

Query: 441  TEHSGYGRYWKKNARHRDQK--GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
             E         +  R  +Q+     ++L + S     ++      E+ L     +   +L
Sbjct: 1688 EESRTLLEQADRGRRQAEQELSDAHEQLNEVSAQNASIAAAKRKLESELQTLHSDLDELL 1747

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
             E        +    +  +L   L     +      E++ + L ++   EL  +LD    
Sbjct: 1748 NEAKNSEEKAKKAMVDAARLADEL--RAEQDHAQTQEKLRKALEQQ-IKELQVRLDDAET 1804

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKR--------FRLLSRQKEEI--EKQIAQVTAK 608
            +A          +    +  +  L   +R         R   R+ +E+  + +  +   +
Sbjct: 1805 NALKGGKKAIQKLEQRVRELESELDSEQRRHTDAQKNLRKSERRIKELTFQSEEDRKNHE 1864

Query: 609  GEAEKTAILISILHEVHIQIHQIESQEAM 637
               +    L   +     QI + E   A+
Sbjct: 1865 RMQDLVDKLQQKIKTYKRQIEEAEEIAAL 1893


>gi|108885083|ref|NP_072756.2| replicative DNA helicase [Mycoplasma genitalium G37]
 gi|2506499|sp|P47340|DNAB_MYCGE RecName: Full=Replicative DNA helicase
 gi|84626146|gb|AAC71312.2| replicative DNA helicase [Mycoplasma genitalium G37]
 gi|166078801|gb|ABY79419.1| replicative DNA helicase [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 468

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 11/158 (6%), Positives = 47/158 (29%), Gaps = 3/158 (1%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           Q +  K          E  L+  +  +   +   + +L  I +     + ++     ++ 
Sbjct: 3   QQTSFKYANDSNIERAERRLMQAVAQNSEGIDLIFNKLEPIDFFATPFKLIFQTAKENYQ 62

Query: 528 EQKYFLPEEIHQRLC---ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                +   + + +    +        +L+       L         +       +  ++
Sbjct: 63  LNNPIIGSGLLEAVKFKLDANDQSTKSELEILFTKILLIRLPPNQTEIKTLVDVVKKASI 122

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
           ++R +  +++    E ++ +   +G  +        + 
Sbjct: 123 FRRLQQFAKRVYNEEFKLKEDRFEGYLQAIQDDFVKII 160


>gi|326674224|ref|XP_003200097.1| PREDICTED: serine/threonine-protein kinase TAO1-like isoform 2
           [Danio rerio]
          Length = 875

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 91/305 (29%), Gaps = 42/305 (13%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
               +   + +     +     K      +    +         K   N       R  +
Sbjct: 457 HEQDSEVREQMSGYKRMRRQHQKHLLALENKLKGEMDEHRLKLDKELENQ------RNSF 510

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-RDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +  +   +++       +   +    KK  +H + Q+         S  +    +K  L+
Sbjct: 511 AAEMDKLIKKHQGTMEKDAKTFANDEKKFLQHIQSQQKKELNSFLESQKREYKLRKEQLK 570

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E+  L          +              + + L + L            + + +RL E
Sbjct: 571 ESKELQIKKQFQDACK----------IQTRQYKALRNHLLE---STPKPEHKTMLKRLKE 617

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL------------ 591
               +L    ++         +T    + + ++   Q L +  +  L             
Sbjct: 618 EQTRKLAILAEQYDHTINNMLSTQALRLDEAQEAECQVLRMQLQQELELLNAYQSKIKMQ 677

Query: 592 -----SRQKEEIEKQ--IAQVTAKGE-AEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
                 R+++E+E++  + +   + +  E+   L +   E    + + +++E  IE F  
Sbjct: 678 TDAQQERERKELEQRVSLRRALLETKIEEEMLTLQNERTERIRSLLERQARE--IEAFDS 735

Query: 644 MSGRL 648
            S RL
Sbjct: 736 ESMRL 740


>gi|302675835|ref|XP_003027601.1| hypothetical protein SCHCODRAFT_79306 [Schizophyllum commune H4-8]
 gi|300101288|gb|EFI92698.1| hypothetical protein SCHCODRAFT_79306 [Schizophyllum commune H4-8]
          Length = 1331

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 74/586 (12%), Positives = 160/586 (27%), Gaps = 60/586 (10%)

Query: 87  ESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF-------------HHSLK 133
           ++V+ LA         V  + E   +   +L   I                    H  L 
Sbjct: 205 DAVRALANET-----EVSTEAEACFQRAKELYEKITDCAGSLERPGTDSDGILQEHKQLD 259

Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193
            A    +    D +   +             +   ++    QK    +  + A       
Sbjct: 260 FAMRHEVETIADLKNKSTAHCIDALRRIGAVNNDLVKTP--QKLSELQTSLRAKNSFSHI 317

Query: 194 NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI---------LFHK 244
               S        +  I   +     F  R  S  E +  L+S E               
Sbjct: 318 QRLHSMLYAYGATVIEIVRRKEFARFFYQRAQSILEVMAKLSSSERKRRQAYRSEVHGQL 377

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
             +L      +  +  S         S     VEG   VL      +++   +       
Sbjct: 378 PFSLKGMDDPVPSIDFSPSGSTESVYSLEREDVEGLFAVL----EDLEHYSRNSNDGKAL 433

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRA-AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
             ++       ++V   DG + G    A +++       +   +   V     ++    +
Sbjct: 434 EAVQQCRADLDKLVAKMDGLESGFDRIAERSLLSASRLSLSRKQSATVDEHAYQELAEQL 493

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R   +   ++          +  + +   R     +E    E           D+  R  
Sbjct: 494 RLQQEAQAQRDEEHRQERERLQAELQQTKRDLRDAEESYASERERA-------DELERQL 546

Query: 424 YS------QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +         I  R  Q+ ++   E         +       +  +Q     +L +    
Sbjct: 547 FQARAEADSEIAAR--QMLEQRNAELRADAEKHAEELSRALGEATAQSRAAEALKQELAH 604

Query: 478 KKPSLREAALLLTLINHP--AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +  E   L    +     +  EQ   LA++       + L + +    +E       
Sbjct: 605 ANAAYAEMRALEARTSERLAQVTDEQSTMLANLEASRERGEDLEAQIREARMENG----- 659

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQ 594
           +IH+ L +    E  + L  Q  +   +     A     R  +++ L   +  +R L R 
Sbjct: 660 DIHRALEDA-QREKDRLLRSQASEHDRFIKDQRAEADGDRAVWERELHELQNSYRQLDRH 718

Query: 595 KEEIEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            ++++  +  ++  A             L     ++ Q +  EA +
Sbjct: 719 VKDLQSALDVSRSDATELRATLQRTEKALRLTEHELRQTKISEATL 764


>gi|309361024|emb|CAP30430.2| CBR-IFT-74 protein [Caenorhabditis briggsae AF16]
          Length = 676

 Score = 45.3 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 49/412 (11%), Positives = 125/412 (30%), Gaps = 39/412 (9%)

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309
               A     K     ++           G  D   L     +    +   A  + +L  
Sbjct: 191 GVLRAKQNAIKVEISKMKEKRD------RGIRDRNELHAYETRASSQAQEIAELQGKLLD 244

Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
           L K+  +I L  D  D  L A            +     N       E     I    + 
Sbjct: 245 LNKIMEKIQLNGDMSDIELEANKMKEQADEMKALTEEAFNERAAKEEECQRLEIEVEEQK 304

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL--------- 420
              + +  ++         + ++ +    +  A++E   +   + + + ++         
Sbjct: 305 KLNEAVTHAMDPQMKEKYEDLKSEAKLLRERVAKMEARNEELDDKLSNYEIKIRSNPFKK 364

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR------------LMQ 468
           R    Q   D L++  +K + +            +  +                     Q
Sbjct: 365 RAVTLQDTLDALKKEEEKLMEDMQNALTPEAWKEKIVESMKQLNSDLLVIEKQHKALKDQ 424

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            SL   +L +  S  EA ++     +  +L +    L +   D  +  KL      ++ +
Sbjct: 425 ISLASEELHEYDSQGEAQIMAHHTKYLQLLSK-SAMLDETPEDYPQKLKLAQQENEEYAD 483

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----VDVRQGYQQALA 583
                  +I   L +   G+ +  LD +  +    +     ++      ++       LA
Sbjct: 484 AIVLNLRKISANLKKVNLGDQITDLDERGLNMNSGNIEELKDMHVRLQEEIISTEDMELA 543

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           + +    ++ + + +++ +  +   G+++        L E+  +   +E++E
Sbjct: 544 INEEIDNMTTETKRVQEALKALEEVGDSD------HQLQELEERKTALENEE 589


>gi|302829945|ref|XP_002946539.1| hypothetical protein VOLCADRAFT_79064 [Volvox carteri f.
           nagariensis]
 gi|300268285|gb|EFJ52466.1| hypothetical protein VOLCADRAFT_79064 [Volvox carteri f.
           nagariensis]
          Length = 867

 Score = 45.3 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 84/224 (37%), Gaps = 21/224 (9%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R +++    +     +  +++    + ++     + ++AL+   +   
Sbjct: 284 YRKYIEKDAALERRFQQVYVDQPTVAETVSILRGLRERYEVHHGVRISDSALVEAAVLSD 343

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S  +       + +   +      ++  +   
Sbjct: 344 RYIADRFLPDKAIDLVDEAAAKLKMEITSKPMALDEIDRKVLQLEMERLSLEKVSDR--- 400

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------QIAQVTAK 608
               A    AT +A +  ++   Q   A ++R +    + +++++       +IAQ    
Sbjct: 401 ---GAAARLATLDAELSRLKSEQQVITAQWQREKADMSRVQDLKEEIERVNIEIAQAERD 457

Query: 609 GEAEKTAIL-ISILHEVHIQIHQIESQEAMI-----EGFGKMSG 646
            +  + A L    L  +  Q+    ++EA+       G G  SG
Sbjct: 458 YDLNRAAELKYGTLLNLQNQLKA--AEEALARKVKESGNGAASG 499


>gi|282879530|ref|ZP_06288261.1| replicative DNA helicase [Prevotella timonensis CRIS 5C-B1]
 gi|281306478|gb|EFA98507.1| replicative DNA helicase [Prevotella timonensis CRIS 5C-B1]
          Length = 504

 Score = 45.3 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/182 (9%), Positives = 61/182 (33%), Gaps = 15/182 (8%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
             +++          +  + +  E  +L  L+          + +    + + + QK++ 
Sbjct: 4   PKTKKTTPIDTTYAHVQPQATDVERVVLGALMIDKDAFSVVSELIRPETFYDPKHQKIYH 63

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERG-FGEL-----LKQLDRQVRDAGLWSATTEANIVD- 573
            + +  +++       +  +L   G   E+     + +L  QV  +       +      
Sbjct: 64  AIQTLNMDENPVDIMTVIDQLKREGTLDEIGGAPYVLELSSQVASSANIEYHAKIIAQKS 123

Query: 574 -VRQGYQQALALYKRFRLLSRQKEEIEKQ-------IAQVTAKGEAEKTAILISILHEVH 625
             RQ    A  +  +    ++   E+ ++       ++Q   K +  +   +I+   ++ 
Sbjct: 124 LARQLISYASMIETKAFDETQDIAELMQEAEGNLFTLSQTNMKKDYTQIDPIIAQATDIL 183

Query: 626 IQ 627
            +
Sbjct: 184 QK 185


>gi|198456261|ref|XP_001360276.2| GA13959 [Drosophila pseudoobscura pseudoobscura]
 gi|198135550|gb|EAL24851.2| GA13959 [Drosophila pseudoobscura pseudoobscura]
          Length = 2014

 Score = 45.3 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 110/339 (32%), Gaps = 15/339 (4%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D +     AA  +   +   L        +     ED     +       + L       
Sbjct: 1642 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1701

Query: 382  VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                  + +++          AE+    ++  +  + ++        + + +     K  
Sbjct: 1702 AAKEELQAQSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANSSSKGS 1761

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                   R   + A   ++    Q   +  L +   S+K  L+   L   L N  +  Q+
Sbjct: 1762 LMVDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1818

Query: 501  QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                 A +   N EL+   + +           +         + ++L   G   LL+Q 
Sbjct: 1819 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1878

Query: 554  DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610
              +  D  +   T         V Q  +Q   L  R +LL R  +E E+++  + T K +
Sbjct: 1879 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1938

Query: 611  AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648
             ++    +    E ++ +I+ ++++     G G  S RL
Sbjct: 1939 YQRECEDMIESQEAMNREINSLKTKLRRTGGMGLSSSRL 1977


>gi|195149489|ref|XP_002015690.1| GL10886 [Drosophila persimilis]
 gi|194109537|gb|EDW31580.1| GL10886 [Drosophila persimilis]
          Length = 2045

 Score = 45.3 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 110/339 (32%), Gaps = 15/339 (4%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D +     AA  +   +   L        +     ED     +       + L       
Sbjct: 1673 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1732

Query: 382  VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                  + +++          AE+    ++  +  + ++        + + +     K  
Sbjct: 1733 AAKEELQAQSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANSSSKGS 1792

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                   R   + A   ++    Q   +  L +   S+K  L+   L   L N  +  Q+
Sbjct: 1793 LMVDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1849

Query: 501  QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                 A +   N EL+   + +           +         + ++L   G   LL+Q 
Sbjct: 1850 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1909

Query: 554  DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610
              +  D  +   T         V Q  +Q   L  R +LL R  +E E+++  + T K +
Sbjct: 1910 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1969

Query: 611  AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648
             ++    +    E ++ +I+ ++++     G G  S RL
Sbjct: 1970 YQRECEDMIESQEAMNREINSLKTKLRRTGGMGLSSSRL 2008


>gi|194856738|ref|XP_001968816.1| GG25079 [Drosophila erecta]
 gi|190660683|gb|EDV57875.1| GG25079 [Drosophila erecta]
          Length = 624

 Score = 45.3 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 77/225 (34%), Gaps = 25/225 (11%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + I D L +  ++       +    K   +    +   +  +QS   +     +   +E
Sbjct: 180 RKKINDELNEAVKELERLRKQFDETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQE 239

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWS---FLFSDFVEQKYFLPEEIHQRL 541
                  IN    +++      D R  +    KL      L + + EQ     ++I    
Sbjct: 240 -------INESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMRINRDDIESLY 292

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            ++        + R    A   S +T  +I ++R    +   L  +   L +   ++  +
Sbjct: 293 EDK--------IRRLQEAAARTSNSTHKSIEELRSTRVRIDGLNAKINDLEQINADLNGR 344

Query: 602 IAQVTAKGEAEKTAI------LISILHEVHIQI-HQIESQEAMIE 639
           I ++  + + ++         L   L  +  ++  Q++  + +++
Sbjct: 345 IRELERQLDNDRERHGQEIAVLEKELIRLREEMTQQLQEYQDLMD 389


>gi|121710680|ref|XP_001272956.1| cell polarity protein (Tea1), putative [Aspergillus clavatus NRRL 1]
 gi|119401106|gb|EAW11530.1| cell polarity protein (Tea1), putative [Aspergillus clavatus NRRL 1]
          Length = 1502

 Score = 45.3 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 27/279 (9%), Positives = 82/279 (29%), Gaps = 25/279 (8%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            +         +   + +                            + ++L++     I  
Sbjct: 1068 EERIAGLEAYQEQASREGLQLRRQLQAAMKESQAHATENRELKSKLENQLREAGALAIQH 1127

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
             +      ++   + D +   +     S        +    E  L  +L  H  +     
Sbjct: 1128 AALKDLLGERGVSYTDSRRSPRLESPGSRFGTPEQTRLRDLEQQLSTSLKAHEELKASFE 1187

Query: 503  QELADIRYDNNELQKLWSFLFS------DFVEQKYFLPEEIHQRL-----CERGFGELLK 551
                +    +   ++    L +       +V+    + + +   L             L+
Sbjct: 1188 NREQE---ADRAYREKLEQLENDYQSAVHYVKGTEKMLKRMKDELTRYKAQNTKIQADLE 1244

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-----FRLLSRQKEEIEKQIAQVT 606
               R +  A   ++   A     RQ  QQ+L+  ++        L  Q  ++++ ++   
Sbjct: 1245 AAQRSISQASGQASEAPAEWEAERQKLQQSLSELQKDTTSSIAALESQITKLKQDLSAAE 1304

Query: 607  AKGEAEKTA------ILISILHEVHIQIHQIESQEAMIE 639
            A+ +  ++        L +   +   ++ Q++ + A++E
Sbjct: 1305 AEKDESRSEYESIKEELAAAAEKNRAELEQLKHENALLE 1343


>gi|67921632|ref|ZP_00515150.1| AAA ATPase, central region:Clp, N terminal:Clp, N terminal
           [Crocosphaera watsonii WH 8501]
 gi|67856744|gb|EAM51985.1| AAA ATPase, central region:Clp, N terminal:Clp, N terminal
           [Crocosphaera watsonii WH 8501]
          Length = 887

 Score = 45.3 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 78/221 (35%), Gaps = 9/221 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++K++ +     R +++    +     +  +++    + ++     + ++AL+       
Sbjct: 322 YRKHVEKDPALERRFQQVYVKQPSVDDTISILRGLKERYEVHHGVKITDSALVAAATLSN 381

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI---HQRLCERGFGE---- 548
             + +++     I   +    KL   + S  VE +      +    ++L   G  E    
Sbjct: 382 RYITDRFLPDKAIDLVDEAAAKLKMEITSKPVELEDVDRRLMQLQMEKLSLEGEEERGML 441

Query: 549 -LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            + K    ++          E     +   +Q    + +    L  Q+E++  QI Q   
Sbjct: 442 VVDKSSKERLEKIQQEIKELEQIHEKLGSQWQSEKQMLEEINSLKEQEEQLRHQIEQAER 501

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
             +  K A L    L  +  Q+   E+Q   I+  G+   R
Sbjct: 502 DYDLNKAAQLKYGELEGLQRQLEAKETQLIDIQAQGETLLR 542


>gi|240140457|ref|YP_002964936.1| hypothetical protein MexAM1_META1p3978 [Methylobacterium extorquens
           AM1]
 gi|240010433|gb|ACS41659.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 312

 Score = 45.3 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 41  ACCPFHDEKTPSFHCNDS--KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
             CP    KT  F  +D   +G + C  C   GD       +LG  F E  +R+A + G 
Sbjct: 33  GPCPICGGKT-RFRYDDKEGRGTWICNHCGA-GDGADLAMKVLGIDFKELAERIAPLIGE 90

Query: 99  PLPVVDPKIEKKEKIQTDL 117
             P    K    +  +  L
Sbjct: 91  IKPTAPKKDRSHDDTRKSL 109


>gi|194759999|ref|XP_001962229.1| GF15360 [Drosophila ananassae]
 gi|190615926|gb|EDV31450.1| GF15360 [Drosophila ananassae]
          Length = 2165

 Score = 45.3 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 74/261 (28%), Gaps = 22/261 (8%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1775 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1834

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1835 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1887

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFL-----PEEIHQRLCER------GFGELL 550
             +    +   +   ++    L     +               ++L            ELL
Sbjct: 1888 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1947

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
             +       A            ++R     A    K  + L +Q +E++ ++ +  A   
Sbjct: 1948 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 2007

Query: 608  KGEAEKTAILISILHEVHIQI 628
            KG  +    L   + E+  ++
Sbjct: 2008 KGGKKAIQKLEQRVRELENEL 2028


>gi|149723247|ref|XP_001487914.1| PREDICTED: leucine rich repeat containing 45 [Equus caballus]
          Length = 670

 Score = 45.3 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 103/285 (36%), Gaps = 15/285 (5%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                   +L+  +      L +R+ +       +        L++     +   L    
Sbjct: 316 EQKAQDLGELLATAEQEQRSLVQRQAKEHRLEQQEAAERESKLLRDLSAANEKNLLLQSQ 375

Query: 425 SQAIRDRLQQLFQKY---ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
              +  +++ L ++      E +      K  A   +++   ++      ++     +  
Sbjct: 376 VDELERKVKSLQEQLFLTRQELTNTSAELKMRAVQAEERLDLEKKRSRQSLEDSEQLRFK 435

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQ- 539
             E  +   L      +QE+ Q L   R     EL ++ +   ++  + +  L +  +Q 
Sbjct: 436 EVE-HMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKAVALNERGQAEEELIKAKNQV 494

Query: 540 RLCERG-FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           RL E+     L ++L    +      +T       V     +A  L ++   L R+ +E+
Sbjct: 495 RLEEQQRLAHLEEKLRLLAQARDEAQSTCLQQKQTVADAQARASQLGQQVEGLRRRLKEL 554

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE----SQEAMIE 639
           ++++    +  + E+ A +  +  E+  Q  +++    +QEA+ E
Sbjct: 555 QQEL----SNKDQERVAEVTRVRVELQEQNGRLQAELTAQEALKE 595


>gi|148223878|ref|NP_001084034.1| myosin, heavy chain 10, non-muscle [Xenopus laevis]
 gi|214624|gb|AAA49915.1| nonmuscle myosin heavy chain b [Xenopus laevis]
          Length = 1992

 Score = 45.3 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 104/287 (36%), Gaps = 23/287 (8%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + +   EK I+      +     E E        ++ E+E  L++    +++++ 
Sbjct: 893  DMEQKHQQLVEEKNILAEQLHAETELFAEAEEMRARLAIKKQEMEEILRDLEIRMEEEEE 952

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    Q  + ++Q   Q    +        K        +   +++ +  LV    + K 
Sbjct: 953  RNQVLQNEKKKMQTHVQDLEEQLDEEEAAQKLQLEKVTAEAKIKKMEEDILVLEDQNSKF 1012

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEIH 538
             L+E  LL         + E   +LA+       L KL     +    +E++    E+  
Sbjct: 1013 -LKEKKLLE------ERIAESTSQLAEEEEKAKNLAKLKNKQEMMISDLEERLKKEEKTR 1065

Query: 539  QRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
            Q L +           F + + +L  Q+ +  L  A  E    +++    +      +  
Sbjct: 1066 QELEKAKRKLDGETTDFQDQIAELQAQIEELKLQLAKKE---EELQAALARGDEEVLQKN 1122

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
               +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1123 NTLKLVRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTE 1169



 Score = 44.5 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 75/243 (30%), Gaps = 22/243 (9%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ + Y   +  ++RLQQ     + +           +K  
Sbjct: 1406 EEVKKKLLKDTEGLGQRLEEKIIAYEKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ 1465

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L         
Sbjct: 1466 KKFDQLLAEEKNISARHAEERDRAEADAREKETKAL-----SLARALDEALEAQDEFERL 1520

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +                    + +L++  R            + ++
Sbjct: 1521 NKQLRAEMEDLMSSKDDVGKN--------------VHELEKSKRALDQQVEEMRTQLEEL 1566

Query: 575  RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                Q       R  +  +  +   ++  Q   +   EK   L+  + E+  ++     Q
Sbjct: 1567 EDELQGTEDAKLRLEVNMQAMKAQFERDLQTRDEQNEEKKRALVKQVRELEAELEDERKQ 1626

Query: 635  EAM 637
             AM
Sbjct: 1627 RAM 1629


>gi|328790487|ref|XP_623323.3| PREDICTED: myosin heavy chain, non-muscle [Apis mellifera]
          Length = 1967

 Score = 45.3 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 94/283 (33%), Gaps = 6/283 (2%)

Query: 357  EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
                 + R Y +   EK ++      ++    E E         + ELE  L +    I+
Sbjct: 873  HSAQEYERKYQQAMEEKTMLAEQLQAEVELCAEAEEMRARLAARKQELEEILHDLETRIE 932

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            +++ R       + +LQ        +        +K    + Q     + ++  L     
Sbjct: 933  EEEERSAGLAQEKKKLQLNISDLEEQLEEEEAARQKLQLEKVQCDAKIKKLEEDLALSDD 992

Query: 477  SKKPSLREAALLLTLINHPAILQEQYQE----LADIRYDNNE-LQKLWSFLFSDFVEQKY 531
            + +  L+E  +L    N  +    + +E    L+ ++  +   +  L   L  D  +++ 
Sbjct: 993  TNQKLLKEKKILEERANDLSQTLAEEEEKAKHLSKLKAKHEATIADLEERLLKDHQQRQE 1052

Query: 532  FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                +           E L +   QV +  L     E  +  +     +  A   + +  
Sbjct: 1053 VDRSKRKIETEVSDLKEQLAERKTQVEEFQLQLGKREEELNQIMAKMDEEGAAKAQAQKA 1112

Query: 592  SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             R+ E    ++ +     +  +      +  +++ ++  ++++
Sbjct: 1113 LRELESQLAELQEDLEAEKIARGKAE-KLKRDLNEELEALKNE 1154



 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 29/329 (8%), Positives = 97/329 (29%), Gaps = 36/329 (10%)

Query: 335  IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
            ++               + +  +D +  +  + K   + L         +         +
Sbjct: 1605 LEDERKQKAAAIAQRKKMEADYKDIEQQLEMHNKVKEDALKQLKKLQAQIKDCTRETEEA 1664

Query: 395  FNTPDERAELEIHLKNCINHIKD-------------------QKLRYYYSQAI---RDRL 432
                DE A      +  +  ++                    +  R    + +    ++ 
Sbjct: 1665 RAARDELAASAKETEKKVKSLEADLMQLTEDFASSERARRAAENERDELQEELNNNANKG 1724

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
              +  +     +      ++    +          + + +  +        E +    L 
Sbjct: 1725 TLMLDEKRRLEARIATLEEELEEEQSNAELLMDRARKAQITIEQLTNDLTTERSTTQKLE 1784

Query: 493  NHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
            +H  +L+ Q +EL       +  +  K  + +     +      +   +        ++ 
Sbjct: 1785 SHKLLLERQNKELKAKLTELETAQRAKTKATIQQLESKINNLDEQLETEAKERFAQQKIN 1844

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------ 604
            ++L++++++  L       N    ++   QA  +  R + L RQ +E E++I++      
Sbjct: 1845 RKLEKKLKELSLQLEDERRNSDQYKE---QAEKVNARMKALKRQLDEAEEEISRHKAMKR 1901

Query: 605  -VTAKGEA--EKTAILISILHEVHIQIHQ 630
                + +   E    L   +  +  ++ +
Sbjct: 1902 KAQREMDDMLESQEELTREVANLKNKLRR 1930


>gi|327468892|gb|EGF14364.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis SK330]
          Length = 631

 Score = 45.3 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 17/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++   +   +         +    ++  ++   L +R   L  Q E+++ QI+
Sbjct: 532 KAEQEALRE---ETEQSSPDKPAPANDYQLQKENQKEQRRLARRLEQLEAQIEDLDSQIS 588

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
           Q+    EA   A   + L E   QI Q+ +  +EAM+E
Sbjct: 589 QLQEAMEATNDA---AELMESQQQIDQLTAAQEEAMLE 623


>gi|327275905|ref|XP_003222712.1| PREDICTED: neurabin-2-like [Anolis carolinensis]
          Length = 1379

 Score = 45.3 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 81/229 (35%), Gaps = 17/229 (7%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG--PSQRLMQSSLVKGKLSKKPSLR 483
             +   +QQ  ++   +     + + +     ++ G   +    + S +         + 
Sbjct: 570 SEVAQLIQQTLEQERWQREMMEQRYTQYTEEDEETGEYATDEDEEMSPMFPSSEMAIEVF 629

Query: 484 E----AALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           E      +L  +   P  ++ +  +          E+Q+L   L S   E+  +  E+  
Sbjct: 630 ELAENEDMLSPVEMDPEKLVHKFKELQIKHAVTEAEIQQLKRKLQSIEQEKARWRLEKAQ 689

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ---- 594
                    E +++L+    +A       + ++ + +  YQ     Y + + L ++    
Sbjct: 690 LEQSVEENKERMEKLEGYWMEAQNLCQAVDEHLKETQAQYQTLERKYSKAKRLIKEYQQK 749

Query: 595 ------KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
                 KE  +++I + +     E+   L   + E+  ++  ++++  +
Sbjct: 750 EIEFLKKETAQRRIQEESEMAHKEEVDKLQEKISELEAKLQTLKNESTL 798


>gi|295689699|ref|YP_003593392.1| replicative DNA helicase [Caulobacter segnis ATCC 21756]
 gi|295431602|gb|ADG10774.1| replicative DNA helicase [Caulobacter segnis ATCC 21756]
          Length = 505

 Score = 45.3 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 51/176 (28%), Gaps = 11/176 (6%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                     ++      E ALL  L+   A  +     L    +     Q+L+  + + 
Sbjct: 11  RPPIEEPTINVAPHNMEAEQALLGILLYDNAAYERLTDNLQARCFYEPFHQRLFQAVETH 70

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
             + +   P  +          + L  L  +     +  A   AN  D  +         
Sbjct: 71  VRKGQLAEPILLADEFKNDPAFQELGGL--RYLADLVDRAPPAANAGDYARVIFDL---- 124

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
                L R+   I   IA   A+G  ++       +     Q++ +    A   GF
Sbjct: 125 ----SLRRELIRIGGDIATA-AQGAGDEKRAARDQIEAAEQQLYSLAESGAASSGF 175


>gi|553596|gb|AAA59888.1| cellular myosin heavy chain [Homo sapiens]
          Length = 1337

 Score = 45.3 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 87/265 (32%), Gaps = 28/265 (10%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EKL ++     +     E E        ++ ELE    +    +++++ R  + QA + 
Sbjct: 880  AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKK 939

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++QQ  Q+   +        +K    +       + ++   +  +       +E  LL  
Sbjct: 940  KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEEQIILEDQNCKLAKEKKLLE- 998

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +                      E    +L 
Sbjct: 999  -----DRIAEFTTNLTEEEEKSKSLAKLKNK--------------------HEAMITDLE 1033

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L R+ +       T      D      Q   L  +   L  Q  + E+++    A+ E
Sbjct: 1034 ERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVE 1093

Query: 611  AEKTAILIS--ILHEVHIQIHQIES 633
             E     ++   + E+  QI +++ 
Sbjct: 1094 EEAAQKNMALKKIRELESQISELQE 1118


>gi|75762595|ref|ZP_00742445.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218899706|ref|YP_002448117.1| MutS2 family protein [Bacillus cereus G9842]
 gi|228903069|ref|ZP_04067206.1| hypothetical protein bthur0014_42360 [Bacillus thuringiensis IBL
           4222]
 gi|226723045|sp|B7IJV1|MUTS2_BACC2 RecName: Full=MutS2 protein
 gi|74489915|gb|EAO53281.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218542145|gb|ACK94539.1| MutS2 family protein [Bacillus cereus G9842]
 gi|228856555|gb|EEN01078.1| hypothetical protein bthur0014_42360 [Bacillus thuringiensis IBL
           4222]
          Length = 786

 Score = 45.3 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNDE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQIES 633
            +           EK          +  ++ Q+  
Sbjct: 565 RDEKLLKAQKEGEEKVEAAKKEAEGIIQELRQLRK 599


>gi|327473273|gb|EGF18693.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis SK408]
          Length = 641

 Score = 45.3 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 65/158 (41%), Gaps = 17/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSEAGSTLYLGDYDYYLEK 541

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++ + +  D+   +   +  +   ++  ++   L +R   L  Q E+++ QI+
Sbjct: 542 KAELEALRE-ETEQVDSDKPAPANDYQLQ--KENQKEQRRLARRLEQLEAQIEDLDSQIS 598

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
           Q+    EA   A   + L E   QI Q+ +  +EAM+E
Sbjct: 599 QLQEAMEATNDA---AELMESQQQIDQLTAAQEEAMLE 633


>gi|119961825|ref|YP_949806.1| replicative DNA helicase [Arthrobacter aurescens TC1]
 gi|119948684|gb|ABM07595.1| replicative DNA helicase [Arthrobacter aurescens TC1]
          Length = 462

 Score = 45.3 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/175 (9%), Positives = 52/175 (29%), Gaps = 14/175 (8%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
             +    +   +    E ++L  ++     + +  + +    +     + ++  +   + 
Sbjct: 12  SRASDSSRKPPQDIPAEQSVLGGMMLSKDAIADVVEIVRGHDFYRPAHETIYESIIDLYG 71

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
             +      +   L +RG    + ++        L      A       GY   +     
Sbjct: 72  RGEPADAVTVSDELTKRG---EINRIGGPAYLHELIQTVPTA----ANAGYYAEIVA--- 121

Query: 588 FRLLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIHQIESQEAMIE 639
            R + R+      +I Q+    +    +      + ++ V  +    E   A+ +
Sbjct: 122 ERAVLRRLVNAGTKIVQMGYGQDGEVEDLVNQAQAEVYAV-AEKRTAEDYVALKD 175


>gi|321399203|emb|CAM66680.2| putative kinesin K39 [Leishmania infantum JPCM5]
          Length = 2926

 Score = 45.3 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 92/277 (33%), Gaps = 6/277 (2%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +     A ++        ++   ++  E  +     +    E   +       ++ LR  
Sbjct: 1168 KGSEAEAAKEDSEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQ 1227

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              +  +   +   ++   +     +  +  A   D +    +L +++  K +L  +   +
Sbjct: 1228 LEETTQQLEEANAERERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSELEEK 1287

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRL 541
             +       ++ A+  +  +    +   N E ++L S L     E        E +  +L
Sbjct: 1288 GSEAEAAKEDNEALRGQLEETTQQLEEANAENERLQSELEEKGSEAAAAKEDSEALRGQL 1347

Query: 542  CER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             E      E   + +R   +     +  EA   D      Q     ++    + ++E ++
Sbjct: 1348 EEATQQLEEANAERERLQSELEEKGSEAEAAKEDNEALRGQLEEATQQLEEANAERERLQ 1407

Query: 600  KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
             ++ +  ++ E   E    L   L E   Q+ +  ++
Sbjct: 1408 SELEEKGSEAEAAKEDNETLRGQLEETTQQLEEANAE 1444



 Score = 44.1 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 95/277 (34%), Gaps = 6/277 (2%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +     A ++        ++   ++  E  +     +    E   +       ++ LR  
Sbjct: 1007 KGSEAEAAKEDSEALRGQLEETTQQLEEANAERERLQSELEEKGSEAEAAKEDNETLRGQ 1066

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              +  +   +   +K   +     +  +  A   D +    +L +++  K +L  +   +
Sbjct: 1067 LEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSELEEK 1126

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRL 541
             +       +  A+  +  +    +   N E ++L S L     E +      E +  +L
Sbjct: 1127 GSEAEAAKEDSEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDSEALRGQL 1186

Query: 542  CE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             E  +   E   + +R   +     +  EA   D      Q     ++    + ++E ++
Sbjct: 1187 EETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEETTQQLEEANAERERLQ 1246

Query: 600  KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
             ++ +  ++ E   E    L   L E + +  +++S+
Sbjct: 1247 SELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSE 1283



 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 73/212 (34%), Gaps = 8/212 (3%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            ++RLQ   ++  +E        +      ++         +   + +   +    EA   
Sbjct: 2075 KERLQSELEEKGSEAEAAKEDNEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAA 2134

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCE--R 544
                ++ A+  +  +    +   N E ++L S L     E +      E +  +L E  +
Sbjct: 2135 KE--DNEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEETTQ 2192

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E   + +R   +     +  EA   D      Q     ++    + ++E ++ ++ +
Sbjct: 2193 QLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEETTQQLEEANAERERLQSELEE 2252

Query: 605  VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
              ++ E   E    L   L E   Q+ +  ++
Sbjct: 2253 KGSEAEAAKEDNEALRGQLEEATQQLEEANAE 2284



 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 92/285 (32%), Gaps = 14/285 (4%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R   +   +    E+        + + E  +    +  AE E           + +    
Sbjct: 1118 RLQSELEEKGSEAEAAKEDSEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKE 1177

Query: 424  YSQAIRDRLQQLFQKY---ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
             S+A+R +L++  Q+      E        ++     +        ++  L +     + 
Sbjct: 1178 DSEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEETTQQLEE 1237

Query: 481  SLREAALLLTLINHP----AILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYF--L 533
            +  E   L + +          +E  + L   +   N E ++L S L     E +     
Sbjct: 1238 ANAERERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSELEEKGSEAEAAKED 1297

Query: 534  PEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
             E +  +L E  +   E   + +R   +     +   A   D      Q     ++    
Sbjct: 1298 NEALRGQLEETTQQLEEANAENERLQSELEEKGSEAAAAKEDSEALRGQLEEATQQLEEA 1357

Query: 592  SRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
            + ++E ++ ++ +  ++ E   E    L   L E   Q+ +  ++
Sbjct: 1358 NAERERLQSELEEKGSEAEAAKEDNEALRGQLEEATQQLEEANAE 1402



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 6/152 (3%)

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCE--R 544
               + +  +   + ++  DI   N E ++L S L     E +      E +  +L E  +
Sbjct: 929  ALALENTTLRNARDKDQRDIIVTNAEKERLQSELVEKGSEAEAAKEDSEALRGQLEETTQ 988

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E   + +R   +     +  EA   D      Q     ++    + ++E ++ ++ +
Sbjct: 989  QLEEANAERERLQSELEEKGSEAEAAKEDSEALRGQLEETTQQLEEANAERERLQSELEE 1048

Query: 605  VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
              ++ E   E    L   L E   Q+ +  ++
Sbjct: 1049 KGSEAEAAKEDNETLRGQLEETTQQLEEANAE 1080



 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 38/298 (12%), Positives = 91/298 (30%), Gaps = 27/298 (9%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +     A ++        ++   ++  E  +     +    E   +       ++ LR  
Sbjct: 1413 KGSEAEAAKEDNETLRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQ 1472

Query: 424  YSQAIRD--RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
              +A  +  RLQ   ++  +E        +      ++    +  + S L +     + +
Sbjct: 1473 LEEANAEKERLQSELEEKGSEAEAAKEDNETLRGQLEEANAEKERLHSELEEKGSEAEAA 1532

Query: 482  LREAALLLTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYF 532
              +   L   +         +  E  ++ ++      + + L   L     E    Q   
Sbjct: 1533 KEDNEALRGQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSEL 1592

Query: 533  LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +       +     L  QL+   +     +A  E    ++ +   +A A  K    L 
Sbjct: 1593 EEKGSEAAAAKEDSEALRGQLEEATQQLEEANAEKERLQSELEEKGSEAAAAKKDNEALR 1652

Query: 593  RQKEEIEKQIAQVTAKGE----------------AEKTAILISILHEVHIQIHQIESQ 634
             Q EE  +Q+ +  A+ E                 E    L   L E + +  +++S+
Sbjct: 1653 GQLEETAQQLEEANAERERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSE 1710


>gi|260177247|gb|ACX33967.1| putative DnaB replicative DNA helicase [uncultured bacterium RM35]
          Length = 466

 Score = 45.3 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 41/129 (31%), Gaps = 3/129 (2%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
                      E +++  ++ HP  L    + L    + +  L+ ++  +       K  
Sbjct: 10  PRPTLPHSQEAEESVIGGILLHPTTLNRVAEFLHADDFHHPALKVIYEAMLELERSSKPI 69

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               + +++      E L +L        L    ++   V+  + + + +      R L 
Sbjct: 70  DSLTVVEQMKA---SETLDKLRAFNGPDYLVELMSKVITVENIEYHGRMVHGKATARRLV 126

Query: 593 RQKEEIEKQ 601
           +    I  +
Sbjct: 127 QACSSIAAR 135


>gi|170031764|ref|XP_001843754.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167870925|gb|EDS34308.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 1878

 Score = 45.3 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 63/207 (30%), Gaps = 7/207 (3%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL-LLTLI 492
                  +           N   +    P  R          +S +    E  L L    
Sbjct: 696 DFLPPPPSTSLILVAKSFFNTGRKLSPSPPNRRQSPMEKDEGISDEDDPAELRLQLELNE 755

Query: 493 NHPAILQEQYQELADIRYDNNEL-QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
              A+L+ +  EL      + E  ++L   L S   E                G      
Sbjct: 756 QETAVLRRKIGELETENKRSREHVKELQESLISKTKEMDRQSKFPSLLGSKSGGASGSKD 815

Query: 552 QLDRQVRD--AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK- 608
            LD +         S   +  I   R+  ++A  L ++   L ++ ++   +I Q+  K 
Sbjct: 816 SLDEKKIKVLEEEMSELRKKLIEKDREFEREANVLRQKTHTLEQEIDKQTAEIKQLQQKK 875

Query: 609 --GEAEKTAILISILHEVHIQIHQIES 633
             G   +   L + + E+  +  ++E+
Sbjct: 876 IAGNEAEAKKLNTTIQELQKEKTELEA 902



 Score = 38.3 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 15/144 (10%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
           D+ +  +L   + S   E +    +    R        LL++L      +   +A+    
Sbjct: 333 DHTDNHELQEEIESLRRELETV--KARCDRAEREKSDILLRRLASMDTVSNKTAASEALK 390

Query: 571 IVDVRQGYQQALALYK-RFRLLSRQKEEIEKQIA---------QVTAKGEAEKT--AILI 618
           +       +Q +   +   + L+ + +EIE  I          Q+  K E  +T    L+
Sbjct: 391 LQQKVNEQKQLIEDLQDEKKFLTAKVKEIESDIKVRGVKNVEEQLRQKLEQAETLCEELM 450

Query: 619 SILHEVHIQIHQIESQ-EAMIEGF 641
               E+  ++  +E++ E M + F
Sbjct: 451 DENEEIKREMRTMEAEIEEMHDNF 474


>gi|146081628|ref|XP_001464299.1| kinesin K39 [Leishmania infantum JPCM5]
          Length = 2926

 Score = 45.3 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 92/277 (33%), Gaps = 6/277 (2%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +     A ++        ++   ++  E  +     +    E   +       ++ LR  
Sbjct: 1168 KGSEAEAAKEDSEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQ 1227

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              +  +   +   ++   +     +  +  A   D +    +L +++  K +L  +   +
Sbjct: 1228 LEETTQQLEEANAERERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSELEEK 1287

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRL 541
             +       ++ A+  +  +    +   N E ++L S L     E        E +  +L
Sbjct: 1288 GSEAEAAKEDNEALRGQLEETTQQLEEANAENERLQSELEEKGSEAAAAKEDSEALRGQL 1347

Query: 542  CER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             E      E   + +R   +     +  EA   D      Q     ++    + ++E ++
Sbjct: 1348 EEATQQLEEANAERERLQSELEEKGSEAEAAKEDNEALRGQLEEATQQLEEANAERERLQ 1407

Query: 600  KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
             ++ +  ++ E   E    L   L E   Q+ +  ++
Sbjct: 1408 SELEEKGSEAEAAKEDNETLRGQLEETTQQLEEANAE 1444



 Score = 44.1 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 95/277 (34%), Gaps = 6/277 (2%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +     A ++        ++   ++  E  +     +    E   +       ++ LR  
Sbjct: 1007 KGSEAEAAKEDSEALRGQLEETTQQLEEANAERERLQSELEEKGSEAEAAKEDNETLRGQ 1066

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              +  +   +   +K   +     +  +  A   D +    +L +++  K +L  +   +
Sbjct: 1067 LEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSELEEK 1126

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRL 541
             +       +  A+  +  +    +   N E ++L S L     E +      E +  +L
Sbjct: 1127 GSEAEAAKEDSEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDSEALRGQL 1186

Query: 542  CE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             E  +   E   + +R   +     +  EA   D      Q     ++    + ++E ++
Sbjct: 1187 EETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEETTQQLEEANAERERLQ 1246

Query: 600  KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
             ++ +  ++ E   E    L   L E + +  +++S+
Sbjct: 1247 SELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSE 1283



 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 73/212 (34%), Gaps = 8/212 (3%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            ++RLQ   ++  +E        +      ++         +   + +   +    EA   
Sbjct: 2075 KERLQSELEEKGSEAEAAKEDNEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAA 2134

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCE--R 544
                ++ A+  +  +    +   N E ++L S L     E +      E +  +L E  +
Sbjct: 2135 KE--DNEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEETTQ 2192

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E   + +R   +     +  EA   D      Q     ++    + ++E ++ ++ +
Sbjct: 2193 QLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEETTQQLEEANAERERLQSELEE 2252

Query: 605  VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
              ++ E   E    L   L E   Q+ +  ++
Sbjct: 2253 KGSEAEAAKEDNEALRGQLEEATQQLEEANAE 2284



 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 92/285 (32%), Gaps = 14/285 (4%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R   +   +    E+        + + E  +    +  AE E           + +    
Sbjct: 1118 RLQSELEEKGSEAEAAKEDSEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKE 1177

Query: 424  YSQAIRDRLQQLFQKY---ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
             S+A+R +L++  Q+      E        ++     +        ++  L +     + 
Sbjct: 1178 DSEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEETTQQLEE 1237

Query: 481  SLREAALLLTLINHP----AILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYF--L 533
            +  E   L + +          +E  + L   +   N E ++L S L     E +     
Sbjct: 1238 ANAERERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSELEEKGSEAEAAKED 1297

Query: 534  PEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
             E +  +L E  +   E   + +R   +     +   A   D      Q     ++    
Sbjct: 1298 NEALRGQLEETTQQLEEANAENERLQSELEEKGSEAAAAKEDSEALRGQLEEATQQLEEA 1357

Query: 592  SRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
            + ++E ++ ++ +  ++ E   E    L   L E   Q+ +  ++
Sbjct: 1358 NAERERLQSELEEKGSEAEAAKEDNEALRGQLEEATQQLEEANAE 1402



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 6/152 (3%)

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCE--R 544
               + +  +   + ++  DI   N E ++L S L     E +      E +  +L E  +
Sbjct: 929  ALALENTTLRNARDKDQRDIIVTNAEKERLQSELVEKGSEAEAAKEDSEALRGQLEETTQ 988

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E   + +R   +     +  EA   D      Q     ++    + ++E ++ ++ +
Sbjct: 989  QLEEANAERERLQSELEEKGSEAEAAKEDSEALRGQLEETTQQLEEANAERERLQSELEE 1048

Query: 605  VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634
              ++ E   E    L   L E   Q+ +  ++
Sbjct: 1049 KGSEAEAAKEDNETLRGQLEETTQQLEEANAE 1080



 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 38/298 (12%), Positives = 91/298 (30%), Gaps = 27/298 (9%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +     A ++        ++   ++  E  +     +    E   +       ++ LR  
Sbjct: 1413 KGSEAEAAKEDNETLRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQ 1472

Query: 424  YSQAIRD--RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
              +A  +  RLQ   ++  +E        +      ++    +  + S L +     + +
Sbjct: 1473 LEEANAEKERLQSELEEKGSEAEAAKEDNETLRGQLEEANAEKERLHSELEEKGSEAEAA 1532

Query: 482  LREAALLLTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYF 532
              +   L   +         +  E  ++ ++      + + L   L     E    Q   
Sbjct: 1533 KEDNEALRGQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSEL 1592

Query: 533  LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +       +     L  QL+   +     +A  E    ++ +   +A A  K    L 
Sbjct: 1593 EEKGSEAAAAKEDSEALRGQLEEATQQLEEANAEKERLQSELEEKGSEAAAAKKDNEALR 1652

Query: 593  RQKEEIEKQIAQVTAKGE----------------AEKTAILISILHEVHIQIHQIESQ 634
             Q EE  +Q+ +  A+ E                 E    L   L E + +  +++S+
Sbjct: 1653 GQLEETAQQLEEANAERERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSE 1710


>gi|119495192|ref|XP_001264386.1| intracellular protein transport protein (UsoA), putative
           [Neosartorya fischeri NRRL 181]
 gi|119412548|gb|EAW22489.1| intracellular protein transport protein (UsoA), putative
           [Neosartorya fischeri NRRL 181]
          Length = 1055

 Score = 45.3 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 57/159 (35%), Gaps = 19/159 (11%)

Query: 495 PAILQEQYQELADIRYDNNELQKL----WSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           P  +  Q+       + +          +S L      +       I   +      EL+
Sbjct: 620 PQTVGGQFDAGLPDIFFDRTFIDFLKDNFSRLIRAIDREPGLEISVITNGIQRGVSRELV 679

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-------RQKEE-----I 598
             L  ++ +        E++++++    +Q    +++F+ LS       RQ  E      
Sbjct: 680 DSLRAELEERSQAVQKLESDLLNLGNQLEQEQLEHRKFKDLSSSEASKIRQINESLQRNH 739

Query: 599 EKQIAQVTAKGEAEKTAILISI---LHEVHIQIHQIESQ 634
           E+++A++  + +  K  +L      L  +  Q+ +  ++
Sbjct: 740 EQELARLEEQHKHAKNELLKQHGDQLRAIDNQLKETSAE 778



 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 95/281 (33%), Gaps = 21/281 (7%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK---------D 417
             +   ++        +    R  E       +   +    L+   N +K          
Sbjct: 724 EASKIRQINESLQRNHEQELARLEEQHKHAKNELLKQHGDQLRAIDNQLKETSAEYERRS 783

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           QK++  +   + D  +++  + +       R    +     Q        ++   KG+  
Sbjct: 784 QKVKKLHDAEVADLQKKI--QSLELELTRVREQSADEIGSLQSTIQTMRSEADQSKGQHW 841

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + +  E+ +            +   +++++   ++ +Q+L S L     E       ++
Sbjct: 842 AQVAELESTIQSLRSELDENKAKHADQISNL---SDTIQRLQSEL-DKAKEGHEAELADL 897

Query: 538 HQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             +    +       ++ + ++    L + + ++ +    +  ++ L         S + 
Sbjct: 898 RAKAQTVQSELDTAKQEHETEISGLRLKAQSLQSELDSGTEKSKEDLQAVHDDY--SSKL 955

Query: 596 EEIEKQIAQVTAKGEAEKTAILISI--LHEVHIQIHQIESQ 634
            E+EK++    +K E  +   L S   L EV  Q+ + +++
Sbjct: 956 SELEKRVKLAESKAEKAEADALRSAETLKEVQAQLGKTKAE 996


>gi|153951828|ref|YP_001398413.1| replicative DNA helicase [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939274|gb|ABS44015.1| replicative DNA helicase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 460

 Score = 45.3 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 52/170 (30%), Gaps = 15/170 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L + I           ++    +     + ++  + +    ++      + +   
Sbjct: 10  LERAILSSCIMSEEAYASIAGDIGPKDFSLKAHEDIFKAIIACSNNKEPISISFLRKH-- 67

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           ++   ++L ++        L +   E     +++       L       +R   EI  ++
Sbjct: 68  KKIDEQILAEILATPSMIDLPAYVNELREKSIKRQLLSFAHLLPTRINENRVVSEIADEM 127

Query: 603 --------AQVTAKGEAEKTA---ILISILHEVHIQIHQIESQEAMIEGF 641
                    +V +K   E       L         +I + ++   +  GF
Sbjct: 128 GKEIFSITNRVNSKDIKEVDMVISELFEEFK--KRKILENKNIIGLDTGF 175


>gi|157875544|ref|XP_001686160.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68129234|emb|CAJ07774.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 3167

 Score = 45.3 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 79/228 (34%), Gaps = 7/228 (3%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            ++   +R +   ++   E        ++ A   D+       + + L K +   +    E
Sbjct: 1026 AEEKAERQKAENRRLAAELERAQEEAERLAAELDRAQEEAEKLAADLEKAEEEAERQKAE 1085

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE--IHQRLC 542
               L   +      +E  +  A++     E +KL + L     E +    E   +   L 
Sbjct: 1086 NRRLAAELERAQ--EEAERLAAELDRAQEEAEKLAADLEKAEEEAERQKAENRRLAAELE 1143

Query: 543  --ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
              +     L  +L+R   +A   +A  +    +  +   +     +    L+ + +  ++
Sbjct: 1144 RAQEEAERLAAELERAQEEAERLAAELDRAQEEAEKLAAELERAQEEAEKLAAELDRAQE 1203

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            +  ++ A+ E  +      +  E+     + E   A +E   + + RL
Sbjct: 1204 EAERLAAELEKAQ-EEAERLAAELEKTQEEAERLAAELEKAQEEAERL 1250



 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 11/214 (5%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            ++   +R +   ++   E        ++ A   D+       + + L K +   +    E
Sbjct: 977  AEEEAERQKAENRRLAAELERAQEEAERLAAELDRAQEEAEKLAADLEKAEEKAERQKAE 1036

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE--IHQRLC 542
               L   +      +E  +  A++     E +KL + L     E +    E   +   L 
Sbjct: 1037 NRRLAAELERAQ--EEAERLAAELDRAQEEAEKLAADLEKAEEEAERQKAENRRLAAELE 1094

Query: 543  --ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
              +     L  +LDR   +A   +A  E    +     +Q     +    L R +EE E+
Sbjct: 1095 RAQEEAERLAAELDRAQEEAEKLAADLEKAEEEAE---RQKAENRRLAAELERAQEEAER 1151

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              A++      E+   L + L     +  ++ ++
Sbjct: 1152 LAAELERA--QEEAERLAAELDRAQEEAEKLAAE 1183



 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 66/213 (30%), Gaps = 3/213 (1%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +Q   +RL    ++   E         +     ++        Q    K       +  E
Sbjct: 1145 AQEEAERLAAELERAQEEAERLAAELDRAQEEAEKLAAELERAQEEAEKLAAELDRAQEE 1204

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            A  L   +      +E  +  A++     E ++L + L     E +    +         
Sbjct: 1205 AERLAAELE--KAQEEAERLAAELEKTQEEAERLAAELEKAQEEAERLAADLEKAEEDAE 1262

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIA 603
                  ++L  +V  A   +    A++    +  ++  A  +R    L+R +EE E+  A
Sbjct: 1263 RQKAEKERLAAEVDRAQEEAEKLAADLEKAEEDAERQKADNERLAAELNRAQEEAERLAA 1322

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             +    E  +     +       +    E + A
Sbjct: 1323 DLEKAEEDAERQKADNRRLAADNERLAAELERA 1355



 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 72/221 (32%), Gaps = 12/221 (5%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-----KLSKK 479
            +Q   ++L    +K   E        ++ A   ++       + + L +      KL+  
Sbjct: 1642 AQEEAEKLAADLEKAEEEAERQKAENRRLAAELERAQEEAERLAAELDRAQEEAEKLAAD 1701

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEI 537
                E        ++  +  +  +  A++     E ++L + L    +  E++    E +
Sbjct: 1702 LEKAEEDAERQKADNRRLAADNERLAAELDRAQEEAERLAADLEKAEEDAERQKADNERL 1761

Query: 538  HQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
               L   +     L  +L++   +A   +A  E    +  +       L      L R +
Sbjct: 1762 AAELDRAQEEAERLAAELEKAQEEAERLAAELEKAQEEAERQKADKERL---AAELDRAQ 1818

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE EK  A +    E  +     +       +    E + A
Sbjct: 1819 EEAEKLAADLEKAEEEAERQKADNRRLAADNERLAAELERA 1859



 Score = 44.5 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 12/218 (5%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +Q   +RL     +   E        +K     +++    R + + L + +   +    E
Sbjct: 998  AQEEAERLAAELDRAQEEAEKLAADLEKAEEKAERQKAENRRLAAELERAQEEAERLAAE 1057

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              L         +  +  +   +      E ++L + L     E +    E    +    
Sbjct: 1058 --LDRAQEEAEKLAADLEKAEEEAERQKAENRRLAAELERAQEEAERLAAELDRAQEEAE 1115

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL--------LSRQKE 596
                 L++ + +       +    A +   ++  ++  A  +R +         L R +E
Sbjct: 1116 KLAADLEKAEEEAERQKAENRRLAAELERAQEEAERLAAELERAQEEAERLAAELDRAQE 1175

Query: 597  EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            E EK  A++      E+   L + L     +  ++ ++
Sbjct: 1176 EAEKLAAELERA--QEEAEKLAAELDRAQEEAERLAAE 1211



 Score = 43.7 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 72/219 (32%), Gaps = 12/219 (5%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-----KLSKK 479
            +Q   +RL     +   E        +K     +++      + + L +      KL+  
Sbjct: 1355 AQEEAERLAAELDRAQEEAERLAADLEKAEEDAERQKADNERLAAELDRAQEEAEKLAAD 1414

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEI 537
                E        ++  +  +  +  A++     E ++L + L    +  E++    E +
Sbjct: 1415 LEKAEEDAERQKADNERLAADNERLAAELDRAQEEAERLAADLEKAEEDAERQKADNERL 1474

Query: 538  HQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
               L   +     L  +L++   +A   +A  E    +  +       L      L R +
Sbjct: 1475 AAELDRAQEEAERLAAELEKAQEEAERLAAELEKAQEEAERQKADKERL---AAELDRAQ 1531

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            EE EK  A +    E  +     +      +   Q E++
Sbjct: 1532 EEAEKLAADLEKAEEDAERQKADNERLAAELNRAQEEAE 1570



 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 15/220 (6%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +Q   +RL     +   E        +K     +++      + + L + +   +    E
Sbjct: 2559 AQEEAERLAAELDRAQEEAEKLAADLEKAEEEAERQKADNERLAAELDRAQEEAERLAAE 2618

Query: 485  ----AALLLTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLF--SDFVEQKYFLPEEI 537
                      L       QE+ + LA ++     E +KL + L    +  E++    E +
Sbjct: 2619 LERAQEEAERLAAELDRAQEEAERLAAELDRAQEEAEKLAADLEKAEEEAERQKADNERL 2678

Query: 538  HQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL----YKRFRLL 591
               L   +     L  +L++   +A   +A  E    D  +       L     +    L
Sbjct: 2679 AAELNRAQEEAERLAAELEKAQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAEL 2738

Query: 592  SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             R +EE E+  A++      E+   L + L     +  ++
Sbjct: 2739 DRAQEEAERLAAELDRA--QEEAERLAAELDRAQEEAEKL 2776



 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 66/218 (30%), Gaps = 6/218 (2%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKK-----NARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +Q   ++L    +K   E        ++     N    + +  +  L ++     KL+  
Sbjct: 2650 AQEEAEKLAADLEKAEEEAERQKADNERLAAELNRAQEEAERLAAELEKAQEEAEKLAAD 2709

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                E        ++  +  +  +  A++     E ++L + L     E +    E    
Sbjct: 2710 LEKAEEDAERQKADNRRLAADNERLAAELDRAQEEAERLAAELDRAQEEAERLAAELDRA 2769

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEI 598
            +         L++ +         +    A+   +     +A    +R    L R +EE 
Sbjct: 2770 QEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAELDRAQEEAERLAAELDRAQEEA 2829

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EK  A +    E  +     +       +    E   A
Sbjct: 2830 EKLAADLEKAEEDAERQKADNRRLAADNERLAAELDRA 2867



 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 77/214 (35%), Gaps = 8/214 (3%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            ++ +   L++  ++   + +   R    N R   +   +Q   +      + +++ + R+
Sbjct: 925  AEKLAADLEKAEEEAERQKAENRRLAADNERLAAELDRAQEEAEKLAADLEKAEEEAERQ 984

Query: 485  AALLLTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEE--IHQRL 541
             A    L       QE+ + LA ++     E +KL + L     + +    E   +   L
Sbjct: 985  KAENRRLAAELERAQEEAERLAAELDRAQEEAEKLAADLEKAEEKAERQKAENRRLAAEL 1044

Query: 542  C--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +     L  +LDR   +A   +A  E    +     +Q     +    L R +EE E
Sbjct: 1045 ERAQEEAERLAAELDRAQEEAEKLAADLEKAEEEAE---RQKAENRRLAAELERAQEEAE 1101

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +  A++    E  +         E   +  + E+
Sbjct: 1102 RLAAELDRAQEEAEKLAADLEKAEEEAERQKAEN 1135



 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 88/273 (32%), Gaps = 11/273 (4%)

Query: 387  KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
            + E E  +      + E E    +     +D + +    + +   + +  ++     +  
Sbjct: 1230 QEEAERLAAELEKAQEEAERLAADLEKAEEDAERQKAEKERLAAEVDRAQEEAEKLAADL 1289

Query: 447  GRYWKKNARHR-DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             +  +   R + D +  +  L ++     +L+      E        ++  +  +  +  
Sbjct: 1290 EKAEEDAERQKADNERLAAELNRAQEEAERLAADLEKAEEDAERQKADNRRLAADNERLA 1349

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQK----YFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
            A++     E ++L + L     E +         E      +     L  +LDR   +A 
Sbjct: 1350 AELERAQEEAERLAAELDRAQEEAERLAADLEKAEEDAERQKADNERLAAELDRAQEEAE 1409

Query: 562  LWSATTEANIVDVRQGYQQALAL----YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
              +A  E    D  +       L     +    L R +EE E+  A +    E  +    
Sbjct: 1410 KLAADLEKAEEDAERQKADNERLAADNERLAAELDRAQEEAERLAADLEKAEEDAERQKA 1469

Query: 618  ISILH--EVHIQIHQIESQEAMIEGFGKMSGRL 648
             +     E+     + E   A +E   + + RL
Sbjct: 1470 DNERLAAELDRAQEEAERLAAELEKAQEEAERL 1502



 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 28/265 (10%), Positives = 80/265 (30%), Gaps = 13/265 (4%)

Query: 372  EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
                       D+    E   R     ++ A      +     +     R   +Q   ++
Sbjct: 2061 RTQEEAEKLAADLEKAEEDAERQKADNEQLAAELNRAQEEAKRLAADLER---AQEEAEK 2117

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            L    ++   E        +K     +++    R + +   +     + +  EA      
Sbjct: 2118 LAAELERAQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAELERTQEEAE----- 2172

Query: 492  INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
                 +  +  +   +      + ++L + L     E +    +               +
Sbjct: 2173 ----KLAADLEKAEEEAERQKADNERLAAELDRAQEEAEKLAADLEKAEEDAERQKADNE 2228

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIAQVTAKGE 610
            +L  ++  A   +    A++    +  ++  A  +R    L+R +EE E+  A++    E
Sbjct: 2229 RLAAELNRAQEEAEKLAADLEKAEEDAERQKADNERLAAELNRAQEEAERLAAELERAQE 2288

Query: 611  AEKTAILISILHEVHIQIHQIESQE 635
              +         E   +  + ++++
Sbjct: 2289 EAEKLAADLEKAEEEAERQKADNEQ 2313



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 84/278 (30%), Gaps = 18/278 (6%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
             + A  +   +     ++   +E   +     ++  E     K     +  +  R   +Q
Sbjct: 1622 QEEAERQKADKERLAAELDRAQEEAEKLAADLEKAEEEAERQKAENRRLAAELER---AQ 1678

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
               +RL     +   E        +K     +++    R + +   +       +  EA 
Sbjct: 1679 EEAERLAAELDRAQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAELDRAQEEAE 1738

Query: 487  LLLTLINHPAILQE-----QYQELADIRYDNNELQKLWSFLFSDFVEQK----YFLPEEI 537
             L   +       E       +  A++     E ++L + L     E +         + 
Sbjct: 1739 RLAADLEKAEEDAERQKADNERLAAELDRAQEEAERLAAELEKAQEEAERLAAELEKAQE 1798

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL----YKRFRLLSR 593
                 +     L  +LDR   +A   +A  E    +  +       L     +    L R
Sbjct: 1799 EAERQKADKERLAAELDRAQEEAEKLAADLEKAEEEAERQKADNRRLAADNERLAAELER 1858

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             +EE E+  A++      E+   L + +     +  Q+
Sbjct: 1859 AQEEAERLAAELERA--QEEAERLAAEVDRAQEEAEQL 1894



 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 63/218 (28%), Gaps = 20/218 (9%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSKKPSL 482
            +Q   ++L    +K   +        ++ A   ++        Q    +    L K    
Sbjct: 1404 AQEEAEKLAADLEKAEEDAERQKADNERLAADNERLAAELDRAQEEAERLAADLEKAEED 1463

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK----YFLPEEIH 538
             E               +  +  A++     E ++L + L     E +         +  
Sbjct: 1464 AERQ-----------KADNERLAAELDRAQEEAERLAAELEKAQEEAERLAAELEKAQEE 1512

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                +     L  +LDR   +A   +A  E    D  +       L      L+R +EE 
Sbjct: 1513 AERQKADKERLAAELDRAQEEAEKLAADLEKAEEDAERQKADNERL---AAELNRAQEEA 1569

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            E+  A +    E  +     +       +    E + A
Sbjct: 1570 ERLAADLEKAEEDAERQKADNRRLAADNERLAAELERA 1607



 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 64/196 (32%), Gaps = 3/196 (1%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            ++   +R +   ++   E +      +K A   ++       + + L K +   +    +
Sbjct: 2300 AEEEAERQKADNEQLAAELNRAQEEAEKLAAELEKAQEEAEKLAADLEKAEEEAERQKAD 2359

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
               L   +N     +E  +  A++     E ++L + L     E +    E    +    
Sbjct: 2360 NERLAAELNRAQ--EEAEKLAAELEKAQEEAERLAAELEKAQEEAERLAAELNRAQEEAE 2417

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIA 603
                 L++   +           +     +    ++A    +R    L+R +EE EK  A
Sbjct: 2418 RLAAELERAQEEAERLAAELDRAQEEAERLAAELERAQEEAERLAAELNRAQEEAEKLAA 2477

Query: 604  QVTAKGEAEKTAILIS 619
             +    E  +     +
Sbjct: 2478 NLEKAQEEAERQKAHN 2493



 Score = 37.6 bits (85), Expect = 7.0,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 72/222 (32%), Gaps = 13/222 (5%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSKKPSL 482
            +Q   ++L    +K   +        ++ A   ++        Q    +    L K    
Sbjct: 1691 AQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAELDRAQEEAERLAADLEKAEED 1750

Query: 483  REAALL--LTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQ--KYFLPEEI 537
             E        L       QE+ + LA ++     E ++L + L     E   +    E +
Sbjct: 1751 AERQKADNERLAAELDRAQEEAERLAAELEKAQEEAERLAAELEKAQEEAERQKADKERL 1810

Query: 538  HQRLC--ERGFGELLKQLDRQVRDAGLWSATTE---ANIVDVRQGYQQALALYKRFRL-L 591
               L   +    +L   L++   +A    A      A+   +    ++A    +R    L
Sbjct: 1811 AAELDRAQEEAEKLAADLEKAEEEAERQKADNRRLAADNERLAAELERAQEEAERLAAEL 1870

Query: 592  SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             R +EE E+  A+V    E  +         E   +  + ++
Sbjct: 1871 ERAQEEAERLAAEVDRAQEEAEQLAADLEKAEEEAERQKADN 1912



 Score = 37.6 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 67/217 (30%), Gaps = 10/217 (4%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +Q   +RL     +   E        +K     +++      + + L + +   +    E
Sbjct: 2636 AQEEAERLAAELDRAQEEAEKLAADLEKAEEEAERQKADNERLAAELNRAQEEAERLAAE 2695

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEIHQRLC 542
                        +  +  +   D      + ++L   +   +  +++     E +   L 
Sbjct: 2696 LE--KAQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAELDRAQEEAERLAAELD 2753

Query: 543  --ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL----YKRFRLLSRQKE 596
              +     L  +LDR   +A   +A  E    D  +       L     +    L R +E
Sbjct: 2754 RAQEEAERLAAELDRAQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAELDRAQE 2813

Query: 597  EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            E E+  A++    E  +         E   +  + ++
Sbjct: 2814 EAERLAAELDRAQEEAEKLAADLEKAEEDAERQKADN 2850



 Score = 37.2 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 68/215 (31%), Gaps = 9/215 (4%)

Query: 428  IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            +  +LQ+  Q    + +   R    N R   +   +Q   +    +   +++ + + AA 
Sbjct: 823  LARQLQEAQQDAERQKADNRRLAADNERLAAELERAQEEAEKLAAELDRAQEEAEKLAAD 882

Query: 488  LLTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQK----YFLPEEIHQRLC 542
            L          +   + LA ++     E ++L + L     E +         E      
Sbjct: 883  LEKAEEEAEKQKAHNERLAAELERAQEEAERLAAELDRALEEAEKLAADLEKAEEEAERQ 942

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVR----QGYQQALALYKRFRLLSRQKEEI 598
            +     L    +R   +        E    D+     +  +Q     +    L R +EE 
Sbjct: 943  KAENRRLAADNERLAAELDRAQEEAEKLAADLEKAEEEAERQKAENRRLAAELERAQEEA 1002

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            E+  A++    E  +         E   +  + E+
Sbjct: 1003 ERLAAELDRAQEEAEKLAADLEKAEEKAERQKAEN 1037



 Score = 37.2 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 60/217 (27%), Gaps = 17/217 (7%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +Q   +RL    +K   E        ++     ++        Q    +       +  E
Sbjct: 2517 AQEEAERLAAELEKAREEAERLAAELERAREEAERLAAELEKAQEEAERLAAELDRAQEE 2576

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            A           +  +  +   +      + ++L + L     E +    E    +    
Sbjct: 2577 AE---------KLAADLEKAEEEAERQKADNERLAAELDRAQEEAERLAAELERAQEEAE 2627

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL--------LSRQKE 596
                 L +   +           +     +    ++A    +R +         L+R +E
Sbjct: 2628 RLAAELDRAQEEAERLAAELDRAQEEAEKLAADLEKAEEEAERQKADNERLAAELNRAQE 2687

Query: 597  EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            E E+  A++    E  +         E   +  + ++
Sbjct: 2688 EAERLAAELEKAQEEAEKLAADLEKAEEDAERQKADN 2724



 Score = 37.2 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 75/242 (30%), Gaps = 14/242 (5%)

Query: 401  RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
            + E E    +     +D + +   ++ +   L +  ++     +   +  ++  R   + 
Sbjct: 1447 QEEAERLAADLEKAEEDAERQKADNERLAAELDRAQEEAERLAAELEKAQEEAERLAAEL 1506

Query: 461  GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE--------LADIRYDN 512
              +Q   +      +       R       L       +E  +          A++    
Sbjct: 1507 EKAQEEAERQKADKERLAAELDRAQEEAEKLAADLEKAEEDAERQKADNERLAAELNRAQ 1566

Query: 513  NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
             E ++L + L      ++    ++   R        L  +L+R   +A   +A  E    
Sbjct: 1567 EEAERLAADLEKA---EEDAERQKADNRRLAADNERLAAELERAQEEAERLAAELEKAQE 1623

Query: 573  DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +  +       L      L R +EE EK  A +    E  +     +      ++  Q E
Sbjct: 1624 EAERQKADKERL---AAELDRAQEEAEKLAADLEKAEEEAERQKAENRRLAAELERAQEE 1680

Query: 633  SQ 634
            ++
Sbjct: 1681 AE 1682


>gi|326790184|ref|YP_004308005.1| replicative DNA helicase [Clostridium lentocellum DSM 5427]
 gi|326540948|gb|ADZ82807.1| replicative DNA helicase [Clostridium lentocellum DSM 5427]
          Length = 442

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/162 (9%), Positives = 49/162 (30%), Gaps = 9/162 (5%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
             +   ++       E +++ ++I     +    + L    +   +  ++++ +   +  
Sbjct: 2   EQIQNMRIPPHSIEAEQSVIGSMIMDHDAVIVASEILRPDDFYRPDHAQIYAAIMELYTT 61

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                   I  +L ++G  E +  L      + +    +        + Y + +      
Sbjct: 62  GNPIDLITIQDKLVQKGVLEQIGGL------SYIAELASSVPTSAHIKQYAKIVEEKATL 115

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEK---TAILISILHEVHIQ 627
           R L +   EI  +  +     +         +  IL     +
Sbjct: 116 RRLIKASNEISAKSFEGEEPLDNIMGFAEKQIFEILQNKKTE 157


>gi|260101859|ref|ZP_05752096.1| replicative DNA helicase DnaB [Lactobacillus helveticus DSM 20075]
 gi|260084331|gb|EEW68451.1| replicative DNA helicase DnaB [Lactobacillus helveticus DSM 20075]
 gi|328463232|gb|EGF34950.1| replicative DNA helicase [Lactobacillus helveticus MTCC 5463]
          Length = 464

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 3/122 (2%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +     S  E A+L  +   P  + +    +    +     Q ++  +           
Sbjct: 6   SQQIPHDSDAEKAVLGAIFIDPEAIADASAVVQPEDFYERANQIIYQAMLDLSDRGDAID 65

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  +   L +R     L  +      + L  AT  A  V          AL +R    S+
Sbjct: 66  PLTLQDELNKRNH---LDDIGGISYVSELALATPTAAHVTYYAQIVHRKALLRRLISASQ 122

Query: 594 QK 595
           + 
Sbjct: 123 KI 124


>gi|254724521|ref|ZP_05186304.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           anthracis str. A1055]
          Length = 786

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L  R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSNRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|228941731|ref|ZP_04104278.1| hypothetical protein bthur0008_43670 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974655|ref|ZP_04135221.1| hypothetical protein bthur0003_44080 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981249|ref|ZP_04141549.1| hypothetical protein bthur0002_44100 [Bacillus thuringiensis Bt407]
 gi|228778449|gb|EEM26716.1| hypothetical protein bthur0002_44100 [Bacillus thuringiensis Bt407]
 gi|228785058|gb|EEM33071.1| hypothetical protein bthur0003_44080 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817943|gb|EEM64021.1| hypothetical protein bthur0008_43670 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942336|gb|AEA18232.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 786

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNDE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQIES 633
            +           EK          +  ++ Q+  
Sbjct: 565 RDEKLLKAQKEGEEKVEAAKKEAEGIIQELRQLRK 599


>gi|73980501|ref|XP_852790.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 2 [Canis
           familiaris]
          Length = 1270

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575



 Score = 40.6 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421



 Score = 37.9 bits (86), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310


>gi|254237668|ref|ZP_04930991.1| hypothetical protein PACG_03753 [Pseudomonas aeruginosa C3719]
 gi|126169599|gb|EAZ55110.1| hypothetical protein PACG_03753 [Pseudomonas aeruginosa C3719]
          Length = 902

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 26/141 (18%)

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L      +       +   + +      ++ L+ ++      SA   A     R      
Sbjct: 424 LLDTACARTAISLHAVPAEVDDS--RRRIEALETELAIIRRESAIGVATAERQRNAETLL 481

Query: 582 LALYKRFRLLSRQKEE--------IEKQ----------------IAQVTAKGEAEKTAIL 617
               +R   L ++  E        +E +                + +  A+ + E+   L
Sbjct: 482 AEERERLSALEQRWAEEKCLVDELLETRARLRAAAEAVDAGGVPLGEGEARLDEEQRQAL 541

Query: 618 ISILHEVHIQIHQIESQEAMI 638
            + L E+  Q+  ++ +E +I
Sbjct: 542 HARLAELQAQLSALQGEEPLI 562


>gi|237822370|ref|ZP_04598215.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae CCRI 1974M2]
          Length = 633

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
            ++ + +             +    + ++   E+  Q++    +     A+   +    +
Sbjct: 504 NRVATHVLELSENGSALYLGDYDYYIEKKVEVEM-SQIEEASTNNQAKEASPVNDYQAQK 562

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIA----QVTAKGEAEKTAILISILHEVHIQIHQI 631
           +  ++   L ++   L  + EE+E Q      Q+    +A+K   L + L ++  +    
Sbjct: 563 ESQKEVRKLMRQIESLEAEIEELESQSQAISEQMLETNDADKLMELQAELDKISHR---- 618

Query: 632 ESQEAMIE 639
             +EAM+E
Sbjct: 619 -QEEAMLE 625


>gi|228987801|ref|ZP_04147910.1| hypothetical protein bthur0001_44690 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771849|gb|EEM20306.1| hypothetical protein bthur0001_44690 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 786

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIEQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +    
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNED 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|229032198|ref|ZP_04188171.1| hypothetical protein bcere0028_42400 [Bacillus cereus AH1271]
 gi|228728978|gb|EEL79981.1| hypothetical protein bcere0028_42400 [Bacillus cereus AH1271]
          Length = 786

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNDE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQIES 633
            +           EK          +  ++ Q+  
Sbjct: 565 RDEKLLKAQKEGEEKVEAAKKEAEGIIQELRQLRK 599


>gi|121534994|ref|ZP_01666812.1| replicative DNA helicase [Thermosinus carboxydivorans Nor1]
 gi|121306407|gb|EAX47331.1| replicative DNA helicase [Thermosinus carboxydivorans Nor1]
          Length = 444

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 39/115 (33%), Gaps = 8/115 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++  +    E A+L  ++     + +  + L    +     + ++  + + F   +    
Sbjct: 4   RIPPQNVEAEQAVLGAMLIEREAISKVAEFLRPEDFYREAHRLIYQAILNLFNRNEAVDI 63

Query: 535 EEI------HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
             +       ++L   G    +  L   V  A   +    A IV+ +   +Q + 
Sbjct: 64  VTVTEVLRKEEKLEAAGGISYITSLANSVPTAA--NVVYHAKIVEEKALLRQLIN 116


>gi|115378711|ref|ZP_01465859.1| adventurous gliding protein Z [Stigmatella aurantiaca DW4/3-1]
 gi|115364297|gb|EAU63384.1| adventurous gliding protein Z [Stigmatella aurantiaca DW4/3-1]
          Length = 1402

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 92/268 (34%), Gaps = 17/268 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
               +     K + ++      + +  +    +     + D  L+ + ++     L ++ 
Sbjct: 216 HEKDVELQGLKMQVDDLLRRFNEAQTAMLQKEREHGATVDDLLLQKFSAEK---DLIEVV 272

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                + +   R          ++       ++   K +     +  E  +    +    
Sbjct: 273 AAKEKDINVLKREVNNRDEELSRRATELDTARTEYDKLERQYGVATLEFEVREQKL--DE 330

Query: 497 ILQEQYQELADIRYDNNELQ-KLWSFLFSDFVEQKYFLPE--EIHQRLC--ERGFGELLK 551
            ++    ++A +R    EL   L   +            E   + +RL   E+     ++
Sbjct: 331 TIRGHEADIAQLRKRGEELDSTLAQTVSERDQRYAELEGEIQALQERLQQTEQERDTSVR 390

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            L+++   A    A ++A I  + +  + AL        L++Q  E+E  +A+   + + 
Sbjct: 391 ALEQRALAAEDHGAQSDAEIERL-KAERAALEAR-----LNQQIAELEADVARTIGERDQ 444

Query: 612 EKTAILISILHEVHIQIHQIESQEAMIE 639
            K         E+  Q+++ +++ A +E
Sbjct: 445 LKQEKDAQE-EELTQQLNERDAKLATLE 471


>gi|324507867|gb|ADY43326.1| Coiled-coil domain-containing protein 22 [Ascaris suum]
          Length = 582

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 101/289 (34%), Gaps = 19/289 (6%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                   +L V+ +         E + +     +  + LE       N   D +++   
Sbjct: 290 EMRADELAQLSVQEMSCCQDGEFWEEKLKRRQNNEYASCLEELRSQESNSGVDARIKQLL 349

Query: 425 SQ-AIRDRLQQLFQKYITEHSGYGRYW-----KKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            +  I ++L +  ++           W     +K+   R  +     L Q   ++ + ++
Sbjct: 350 LEPKIVNKLNKYIEESEERMESLQNRWISVKSEKDDELRRARNEYDSLGQEKELQRETAE 409

Query: 479 KPSLREAALLLTLINHPAI--LQEQYQELADIRYDNNEL-QKLWSFLFSDFVEQKYFLPE 535
              L +A      + H  +  L+ + + +  ++ + N   ++++  + +   +Q+     
Sbjct: 410 MLRLADAIESELYLKHEHLSKLKREVERMEQVQLNRNAYTRRIFEIVANIRKQQEDIDKV 469

Query: 536 EIHQRLCERGFGELLKQLDRQ---VRDAGLWSATTEANIVDVRQGYQQA-------LALY 585
               R  ++    L+ +LDR    V +        + ++    +   +        ++  
Sbjct: 470 LSENRHIQKELKSLVGKLDRTFTVVEEKLYRDMQRDTSMQKAYRLLVKIHEECSWVVSAT 529

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +    ++R+ +E+  QIA    K   E    +++   EV  +   + + 
Sbjct: 530 EACGRINREIDELNDQIAIQQQKRLDETLEKVLNDWMEVKQENDALMNT 578


>gi|300726792|ref|ZP_07060222.1| ATP-dependent chaperone ClpB [Prevotella bryantii B14]
 gi|299775905|gb|EFI72485.1| ATP-dependent chaperone ClpB [Prevotella bryantii B14]
          Length = 862

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 49/143 (34%), Gaps = 16/143 (11%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR---QVRDAGLW 563
            I   +    KL         +      +E+++RL +        + +    ++      
Sbjct: 388 AIDLMDEAAAKLRME-----RDSVPEELDELNRRLKQLEIEREAIKRENDTDKIAHLDKE 442

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--------TA 615
            A  +    D R  ++   AL  + +   ++ E ++ +  +   +G  E+          
Sbjct: 443 IAELKDKEKDYRAKWEGERALVNKIQQDKQEIENLKYEAERAEREGNYERVAEIRYSKLQ 502

Query: 616 ILISILHEVHIQIHQIESQEAMI 638
            L   +  + +Q+   +  EAM+
Sbjct: 503 QLQQDIDNIQLQLKATQGGEAMV 525



 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 51/147 (34%), Gaps = 11/147 (7%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             L+ ++Q +        +   +   +   +             R+ +      +   +R
Sbjct: 325 KALERRFQTVLVDEPTEEDAISILRGIKERYENHHKV-------RIQDDACIAAVHLSER 377

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            + D  L     +       +   +  ++ +    L+R+ +++E +   +  + + +K A
Sbjct: 378 YISDRFLPDKAIDLMDEAAAKLRMERDSVPEELDELNRRLKQLEIEREAIKRENDTDKIA 437

Query: 616 ILISILHEVHIQ----IHQIESQEAMI 638
            L   + E+  +      + E + A++
Sbjct: 438 HLDKEIAELKDKEKDYRAKWEGERALV 464


>gi|224178646|ref|XP_002191662.1| PREDICTED: dynactin 1, partial [Taeniopygia guttata]
          Length = 531

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 96/301 (31%), Gaps = 18/301 (5%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D       Y +   +      +  +D     E         D   E   +L   + 
Sbjct: 140 REAKDALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVDSLKEKVEYLTMDLE 199

Query: 414 HIKDQKLRY--------YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQ 464
            +K +            Y  + + ++  +L +  +           +     +  +  + 
Sbjct: 200 ILKHEIEEKGSDGAASSYQVKQLEEQNARLKEALVRMRDLSASEKQEHVKLQKQMEKKNT 259

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSF 521
            L      + KL ++    E  +        A L  +E  + L +   D  E +++L   
Sbjct: 260 ELESLRQQREKLQEEVKQAEKTVDELKEQVDAALGAEEMVETLTERNLDLEEKVRELRET 319

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +       +     + + R  E    E L     +VR+A       +  + D +Q  ++ 
Sbjct: 320 VGDLEAMNEMNDELQENARETELELREQLDMATARVREAEKRVEAAQETVADYQQTIKKY 379

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQE 635
             L    + ++R+    ++  A+   +   E      K A   +    + +++ Q+E Q+
Sbjct: 380 RELTAHLQDVNRELMSQQEASAEKQQQPPPEMFDFKIKFAETKAHAKAIEMELRQMEVQQ 439

Query: 636 A 636
           A
Sbjct: 440 A 440


>gi|182414505|ref|YP_001819571.1| hypothetical protein Oter_2690 [Opitutus terrae PB90-1]
 gi|177841719|gb|ACB75971.1| protein of unknown function DUF1732 [Opitutus terrae PB90-1]
          Length = 290

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 7/132 (5%)

Query: 514 ELQKLWSFLFSDFVEQKYFLP---EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            L+ +   + +         P   E + QRL + G    +   +R +R+  L++   +  
Sbjct: 160 RLRTVRGHVEAIATRAPQVAPGYREVLMQRLRQAGLELDVND-ERVLREVALFADRCDIT 218

Query: 571 IV--DVRQGYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEAEKTAILISILHEVHIQ 627
                +R    Q  AL K    + R+ E I +++  +V   G       +   + E+  +
Sbjct: 219 EELTRLRSHLDQFTALLKSDGEIGRKAEFILQEMGREVNTIGSKANDLAISKAVIELKNE 278

Query: 628 IHQIESQEAMIE 639
           + ++  Q A +E
Sbjct: 279 LERVREQIANVE 290


>gi|169335248|ref|ZP_02862441.1| hypothetical protein ANASTE_01656 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257986|gb|EDS71952.1| hypothetical protein ANASTE_01656 [Anaerofustis stercorihominis DSM
           17244]
          Length = 457

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 61/185 (32%), Gaps = 16/185 (8%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K+    S  E  +L   + +   +    + L+   + +++ + ++  + +     K    
Sbjct: 8   KVMPHNSEAERCVLGCTLINSETISVVREVLSVDDFYDDQHKWVYKAVLALSDRGKAVDA 67

Query: 535 EEIHQRLCERGF------GELLKQL-DRQVRDAGLWSATTEANIVDVRQGYQQAL----- 582
             +   L E G        E L ++ D  V    +           +R+   + L     
Sbjct: 68  LTLSNELKENGVFDKIGGYEFLTKIGDSVVSTNNIEHYCDIIKEKSIRRRLIRELGDVID 127

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ-EAMIEGF 641
             Y      S   E  +K +  ++          L   + +   ++++I+   E +I   
Sbjct: 128 KCYANEDDASSMIERAQKSVYDISMDNNTTDFTKLSDAVSDAVNELNRIQKLDEKVI--- 184

Query: 642 GKMSG 646
           G  SG
Sbjct: 185 GVPSG 189


>gi|168467064|ref|ZP_02700912.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|195630539|gb|EDX49151.1| mechanosensitive ion channel family protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
          Length = 1108

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F     +     +  ++    +  +  +   +Q++L   +  K    R       + N P
Sbjct: 18  FAATAPDAKQITQELEQAKAAKPVQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77

Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +   L+ Q   L D           + L   +     +      E   ++   R   + 
Sbjct: 78  KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137

Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598
           L QL +Q  DA       E         A +   +    QA +   +  +   +  ++  
Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197

Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +++A++ ++   +++  L + L  +  Q++ +  +EA
Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237


>gi|229158157|ref|ZP_04286225.1| hypothetical protein bcere0010_43350 [Bacillus cereus ATCC 4342]
 gi|228625319|gb|EEK82078.1| hypothetical protein bcere0010_43350 [Bacillus cereus ATCC 4342]
          Length = 786

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +    
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNED 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|195394009|ref|XP_002055638.1| GJ18675 [Drosophila virilis]
 gi|194150148|gb|EDW65839.1| GJ18675 [Drosophila virilis]
          Length = 1070

 Score = 45.3 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 69/245 (28%), Gaps = 24/245 (9%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            E   ++T +E       L +    + D +      + + +    LFQ    +       
Sbjct: 357 MEETHYSTNEELQATLQELADLQTQLTDTQTEN---ERLAEEKDVLFQSLCRQTEMLNES 413

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
                     +  + + +     K       S RE  LL        ++Q   +E   + 
Sbjct: 414 R--------TQINTLQELLLRDTKQAAEVSTSEREKKLL-------DLIQTSQEERETLL 458

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               EL      L      +     E+  QR           QLD    +     A    
Sbjct: 459 LKQEELNA---ELAELRQSRDAVQLEQQRQRERNALLD---SQLDAANAERKQSEAQLSL 512

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
              ++ Q   +   L         + EE+E  +A+      ++           +  ++ 
Sbjct: 513 AKEEISQRAIEISRLSTLLENARSKIEELEADLARGDKTDLSDVLDAARREKDTLEERLA 572

Query: 630 QIESQ 634
           +++ Q
Sbjct: 573 ELQDQ 577


>gi|327488861|gb|EGF20659.1| hypothetical protein HMPREF9395_1957 [Streptococcus sanguinis
           SK1058]
          Length = 1067

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 81/701 (11%), Positives = 188/701 (26%), Gaps = 92/701 (13%)

Query: 8   IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
           +++L   + I ++     +   R  ++    D       HD    SF  N  + ++  F+
Sbjct: 4   VEELK-RLSILDVAASLGIQLKRTGSHTYSWD------EHD----SFTINAQENYFNWFA 52

Query: 67  CHVKGDHLSFLSAL------LGCSFIESVQRLAAIAGVPL-------------PVVDPKI 107
               GD  + +  +         SF E+   L       +               ++P  
Sbjct: 53  RSKGGDVFNMVQVVQEELTGQQVSFKEAKHFL-EEGNFEVFDSSKIPEKEPFKYYLEPYE 111

Query: 108 EKKEKIQTDLIRLI---EVATDFF------HHSLKNARDKRLHYYLDERGIDSHAIEMFK 158
            +  + ++ L  +    +   D+F        + K   +      + +     + +    
Sbjct: 112 TEFTEARSYLKDVRGLSDETIDYFGEKGVLAQATKKTGNYYEPIIVFKSLNSQNEVIGAS 171

Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218
           L    ++ Y       ++       +    +  G      +      L+      +G++ 
Sbjct: 172 LQGIRENHYLYERGRLKQIMRASDGLTGMRIDIGQPKRLVFAEAPIDLMSYYELHKGELS 231

Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278
               R ++     +   S      H  + LY        ++          ++      +
Sbjct: 232 DV--RLVAMDGLKESTISR-----HVAELLYELGEIKAKVKPENYSTFLSQTAEVTDFFK 284

Query: 279 GYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLV 338
                  +  A   +      T +     + +   S    +  D D      A K   + 
Sbjct: 285 DGKHQELITLAVDNDTAG--HTFIDRLADKGISFSSDLPSMLADRDKMDWNDALKESKVK 342

Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398
                     N        +         +TA +    ++ P      +           
Sbjct: 343 ALDRSQEPNNNIGGELINRNSGYLEGEPSRTAPQPEEPKAQPDFPANVQLYFNIERPKKS 402

Query: 399 DERAELEIHLK-----NCINHIKDQKLRYY--YSQAIR--------------DRLQQLFQ 437
             R     H         +N   D   +    Y Q +                 LQ  F+
Sbjct: 403 SVRLRKGYHYATNKDIRFLNRYADDIQKSASWYLQELANSKVTYFYQDKEDVQMLQVNFE 462

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
           K+   H         +      +   + +         LS     R+   L+ L+  P I
Sbjct: 463 KHHWMHLTGIAPVYSDWVDNLSEQFIEDVAAGKGNFANLSLGLGFRDKVKLMPLL--PEI 520

Query: 498 LQE---QYQELA------DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
            +     + +L+       +   N         + +   + +   P  + +    +    
Sbjct: 521 FETDSFVFDDLSSVEKMGRLDVANAIRSDDRDVMLAFRTDDRSSFPATLLK--PNQTLNV 578

Query: 549 LLKQLDRQVRDAGLWSATTEA------NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            L  L+++    G++            N   V    QQ L   K+ + +   KE +   +
Sbjct: 579 ELDALNQEKTILGVFVEKNNEIKTLSVNKEFVVDDGQQMLETLKQHQGIEILKENL--SM 636

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
            +  A+   E+   +     E    + + E  E   +G G 
Sbjct: 637 PENQAQSLRERVEQIQREDQERKQALAKKEELERDTDGDGI 677


>gi|323173246|gb|EFZ58875.1| toprim domain [Escherichia coli LT-68]
          Length = 347

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 16/136 (11%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQY----VD-WDRRKTNAVKGDYWACCPFHDEKTP-SFH 54
           M      I  +     ++ +  Q+    V  W          ++    P   ++   SF 
Sbjct: 1   MR-DIATINAIR---SVAAVAAQHAEILVPEWLPEGK-RQAAEWVCRNPTRADRHAGSFS 55

Query: 55  CNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EK 109
            +   G ++ F+     GD ++  + L      ++ + +A   G+ LP +        E+
Sbjct: 56  VSLVDGCWHDFATGDSGGDLVALGAYLWNVRQTDAARIVADRLGLCLPALGKPDVMTREQ 115

Query: 110 KEKIQTDLIRLIEVAT 125
           +E  +  +    + A 
Sbjct: 116 REAQRVRVQAAEQEAA 131


>gi|320451243|ref|YP_004203339.1| DNA repair protein RecN [Thermus scotoductus SA-01]
 gi|320151412|gb|ADW22790.1| DNA repair protein RecN [Thermus scotoductus SA-01]
          Length = 534

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 80/247 (32%), Gaps = 13/247 (5%)

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              +  ++ +    L   Y +A R     L +K   E +   +  +++      K   + 
Sbjct: 121 KRQRELLDALLPPGLLQEYGEAYRKHQALLAEKRTLEEALRAKTEREDLLRFQLKEILEA 180

Query: 466 LMQSSLVKGKLSKKPSLREAALL-------LTLINHP---AILQEQYQELADIRYDNNEL 515
             +    +   ++   LR    L         L+       +LQ   +EL      +  L
Sbjct: 181 SPRPGEDQELEAEAQKLRHLETLRERSGKAYALLAEGGALDLLQAALRELRAGSRFDPAL 240

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
           + L   L    +E    +  E+   L    G    L QL+ ++             + +V
Sbjct: 241 EALAKDL-EAALEGGRAVARELEDYLESLEGDPSRLAQLEERLSLLERLKRKYGPTLEEV 299

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +  ++A    K       +  E+E+ +   +         +  + L        ++E++
Sbjct: 300 LRYRERAEEELKALEGGEERLLELERALRVASGALYKAGERLSEARLEAARKLEKEMETE 359

Query: 635 EAMIEGF 641
            + + GF
Sbjct: 360 LSAL-GF 365


>gi|256824140|ref|YP_003148100.1| primary replicative DNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256687533|gb|ACV05335.1| primary replicative DNA helicase [Kytococcus sedentarius DSM 20547]
          Length = 455

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 10/142 (7%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           +          ++  +    E ++L  ++     + +  + +  + Y     + +   + 
Sbjct: 7   EPPPDDGPGMDRMPPQDVDAERSVLGGMLLSKDAIADVLELVRGVDYYRPAHELIHDAIL 66

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
             F   +      +   L +RG    L++   Q     L  A   A       GY   + 
Sbjct: 67  DLFGRGEPADAITVADELTKRGN---LQRAGGQAYLHQLMQAVPTA----ANAGYYAEIV 119

Query: 584 LYKRFRLLSRQKEEIEKQIAQV 605
                R + R+  E   +I Q+
Sbjct: 120 A---ERAILRRLVEAGTRIVQM 138


>gi|224076429|ref|XP_002195240.1| PREDICTED: similar to rCG33450 [Taeniopygia guttata]
          Length = 2001

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 40/346 (11%), Positives = 96/346 (27%), Gaps = 18/346 (5%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        +     +  +L  R  D     +      
Sbjct: 1404 RRFDSELSQAHEEAQRERLQREKLSREKDVLVAEVFGLKQLLEDRDSDIAGLTQKAEALE 1463

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1464 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1523

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            RL+Q   K +          +++ + +  K    +L +    K K+ ++    E+ L   
Sbjct: 1524 RLRQTHAKEVESRDEEVEEIRQSYQKK-LKQMEVQLEEEYEDKQKVLREKRELESKLSAV 1582

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--EIHQRLCERGF-- 546
                     E  + L         L      +            E  ++  +L E  F  
Sbjct: 1583 SEQANQRDFETEKRLRRDLKRTKALLADAQIMLDHLKNNAPSKREITQLKNQLEESEFTC 1642

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV- 605
               +K        A       E    +  Q         ++ + L RQ  ++++++ ++ 
Sbjct: 1643 AAAVKARKSMESLATRLKENMEKLTEERDQRAAAENREKEQNKRLQRQLRDVKEEMGELA 1702

Query: 606  -----------TAKGEAEKTAILISILH-EVHIQIHQIESQEAMIE 639
                         + + E        L  ++ +   +I   +A IE
Sbjct: 1703 KKEAEASRKKHELEMDLESLEAANQSLQSDLKLAFKRIGDLQAAIE 1748



 Score = 45.3 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 39/326 (11%), Positives = 100/326 (30%), Gaps = 35/326 (10%)

Query: 346  NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
              +    L+   D D     +       +    +       ++E E++       + +LE
Sbjct: 1294 RLIRAAELNGELDDDDSGGEWRLKYERAVRE--IDFTKKRLQQELEDKLEVEQQGKRQLE 1351

Query: 406  IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              L +     ++ +      +    RL    Q       G         + + +      
Sbjct: 1352 RKLADLQADSEESQRALQQLKKKCQRLAAELQDTKLHLEGQQGRNHDLEKKQRRFDSELS 1411

Query: 466  LMQSSLVKGKLSKKPSLREAALL-------LTLINHP-----------AILQEQYQELAD 507
                   + +L ++   RE  +L         L+                L+ + Q+++ 
Sbjct: 1412 QAHEEAQRERLQREKLSREKDVLVAEVFGLKQLLEDRDSDIAGLTQKAEALEAELQDISS 1471

Query: 508  IRYDNNE-LQKLWSFLFSDFV-----EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
                +   L K+   L          E++        Q L +     L  +++R  +   
Sbjct: 1472 QESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLR-LEMEMERLRQTHA 1530

Query: 562  LWSATTEANIVDVRQGYQ--------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                + +  + ++RQ YQ        Q    Y+  + + R+K E+E +++ V+ +     
Sbjct: 1531 KEVESRDEEVEEIRQSYQKKLKQMEVQLEEEYEDKQKVLREKRELESKLSAVSEQANQRD 1590

Query: 614  TAILISILHEVHIQIHQIESQEAMIE 639
                  +  ++      +   + M++
Sbjct: 1591 FETEKRLRRDLKRTKALLADAQIMLD 1616


>gi|170767086|ref|ZP_02901539.1| conserved hypothetical protein [Escherichia albertii TW07627]
 gi|170124524|gb|EDS93455.1| conserved hypothetical protein [Escherichia albertii TW07627]
          Length = 209

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 16/136 (11%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQY----VD-WDRRKTNAVKGDYWACCPFHDEKTP-SFH 54
           M      I  +     ++ +  Q+    V  W          ++    P   ++   SF 
Sbjct: 1   MR-DIATINAIR---SVAAVAAQHAEILVPEWLPEGK-RQAAEWVCRNPTRADRHAGSFS 55

Query: 55  CNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EK 109
            +   G ++ F+     GD ++  + L      ++ + +A   G+ LP +        E+
Sbjct: 56  VSLVDGCWHDFATGDSGGDLVALGAYLWNVRQTDAARIVADRLGLCLPALGKPDVMTREQ 115

Query: 110 KEKIQTDLIRLIEVAT 125
           +E  +  +    + A 
Sbjct: 116 REAQRVRVQAAEQEAA 131


>gi|300796033|ref|NP_001179208.1| coiled-coil domain-containing protein 88B [Bos taurus]
 gi|297492134|ref|XP_002699376.1| PREDICTED: coiled-coil domain containing 88B [Bos taurus]
 gi|296471497|gb|DAA13612.1| coiled-coil domain containing 88B [Bos taurus]
          Length = 1463

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 79/283 (27%), Gaps = 26/283 (9%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               I      A       +L       + +  +      +   + +   +N      ++ 
Sbjct: 965  MRLIEVERSNATLAAEKAALQGQLQHLEGQLGSLQGRAQELLLQSQRAQENSSRLQAEKS 1024

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +     Q +  RL  L ++             +            +L +           
Sbjct: 1025 VLETQGQELHRRLGLLEEEVQAARRSQEETRGQQQALLRDHEALAQLQR----------- 1073

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               +EA L   L  H  +       +  +   + ELQ     L +     +      + +
Sbjct: 1074 --RQEAELEGLLARHRDL----KANMRALELAHRELQGRHEQLQAQKANVEAQEVALLAE 1127

Query: 540  R-------LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
            R         +RG  E L++L  +   A +  A       +++    +      R  L  
Sbjct: 1128 RERLVQDGHRQRGLEEELRRLQSEHDRAQMLLAEVSRERGELQGERGELRGRLARLELER 1187

Query: 593  RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             Q E   +++ +   + +     +      E+  ++   + +E
Sbjct: 1188 AQLEAQSQRLRESNQQLDLSACRLTTQ--CELLTELRSAQEEE 1228



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 74/262 (28%), Gaps = 23/262 (8%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
               E       +E        +     ++   +R     A  +RLQ   ++   E   + 
Sbjct: 834  HVLEAEGRRHLEEAETQRRERQALQEELEKAVVRGRELGARLERLQNELERAALERQEFL 893

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL-- 505
            R  +   +              +    K      LR+ AL L       + + +      
Sbjct: 894  REQEFQHQRYQGLEQRLEAELQAAATSKEEALTELRKRALQL----EGELFKLRQGAAGL 949

Query: 506  ---ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
                       E Q +                  +  +L        L  L  + ++  L
Sbjct: 950  GPQEQTELKGTEAQSMRLIEVERSNATLAAEKAALQGQLQH--LEGQLGSLQGRAQELLL 1007

Query: 563  WSATTEANIVDVRQG----YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
             S   + N   ++        Q   L++R  LL  + +   +  +Q   +G+ +      
Sbjct: 1008 QSQRAQENSSRLQAEKSVLETQGQELHRRLGLLEEEVQAARR--SQEETRGQQQALLRDH 1065

Query: 619  SILHEVHIQIHQIESQEAMIEG 640
              L ++  +      QEA +EG
Sbjct: 1066 EALAQLQRR------QEAELEG 1081


>gi|319757757|gb|ADV69699.1| hypothetical protein SSUJS14_0608 [Streptococcus suis JS14]
          Length = 366

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          P HD    SF        +  FS  ++GD + F+  + G +F E+V  L
Sbjct: 34 PDHD----SFRIFADTNTFKWFSRDIQGDVIDFVQLVAGVTFKEAVSYL 78


>gi|301606697|ref|XP_002932973.1| PREDICTED: centrosomal protein of 164 kDa-like [Xenopus (Silurana)
           tropicalis]
          Length = 1379

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 43/329 (13%), Positives = 110/329 (33%), Gaps = 51/329 (15%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
                 +   +  I       + +  +E          +  E     K  ++  KD  L 
Sbjct: 635 LRMKELQEERKYTIERFETSQEEIILQEKSAIKEKMKADIEEAIKEEKILLDKEKDATLH 694

Query: 421 --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R   SQ     L+ L +++  E        K+  +    +  + RL      + +   
Sbjct: 695 ELREKLSQETNKALEDLEKQHAEELENLRAEVKQKHQKTVSELQNSRLQVHEQGEVQTFS 754

Query: 479 KPSLREAALLLTL---------INHP--AILQEQYQELADIRYDNN-ELQKLWSFLFSDF 526
           + +L    +L  +         +      + ++  ++L  ++ D+  EL+++   L  + 
Sbjct: 755 ELNLSNKKMLQLMDFEKEMSDLLQEKRLEVQRDHERKLERLKEDHQLELERVRDQLEDEE 814

Query: 527 VEQKYFLPEEIHQRLC------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ- 579
             Q+  + E + + L       E+      ++L R+  +        E  + D+ Q  + 
Sbjct: 815 RTQRSRMLERLQEELEKIRQLHEQELETECRELQRKQEERRNSYQEKENKLQDMEQNLEL 874

Query: 580 ---------------------QALALYKRFRLLSRQKEEIEK-----QIAQ---VTAKGE 610
                                +  +L ++ + LSR+ EEI+      ++ +      K  
Sbjct: 875 RRKQLLMKTGQLDSQEENIRQRRTSLEEKEKELSRKTEEIKSSTLNLKMQEDLVTEQKLL 934

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
            +        L +   +  ++E++ A+++
Sbjct: 935 QDIIQKSQHELEKTQNKRTELEAEVALLQ 963



 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 97/283 (34%), Gaps = 15/283 (5%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++   K   E+L        +       +    N       L    +     +++ +++ 
Sbjct: 555 LKDKHKQRLEELRETLRKEEEKKSLEMRQGHENNLRALEELLAKQTQEEETKMREVQMQR 614

Query: 423 YYSQAIRDRLQQLFQ----KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++Q  +    +   +     R +        Q+    +   +   K K   
Sbjct: 615 LVRLEKELEIEQEEEQKKLRLRMKELQEERKYTIERFETSQEEIILQEKSAIKEKMKADI 674

Query: 479 KPSLREAALLL-----TLINH--PAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQK 530
           + +++E  +LL       ++     + QE  + L D+   +  EL+ L + +     ++ 
Sbjct: 675 EEAIKEEKILLDKEKDATLHELREKLSQETNKALEDLEKQHAEELENLRAEVKQK-HQKT 733

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               +    ++ E+G  +   +L+   +         +     +++   +    ++R   
Sbjct: 734 VSELQNSRLQVHEQGEVQTFSELNLSNKKMLQLMDFEKEMSDLLQEKRLEVQRDHERK-- 791

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           L R KE+ + ++ +V  + E E+      +L  +  ++ +I  
Sbjct: 792 LERLKEDHQLELERVRDQLEDEERTQRSRMLERLQEELEKIRQ 834


>gi|237843707|ref|XP_002371151.1| hypothetical protein TGME49_097210 [Toxoplasma gondii ME49]
 gi|211968815|gb|EEB04011.1| hypothetical protein TGME49_097210 [Toxoplasma gondii ME49]
          Length = 1429

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 38/94 (40%)

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +     L++   R+        A  EA +    +  ++A+   +R      ++ + E+Q 
Sbjct: 244 QTERRRLVEAQARRDAARDAEFARREAQLEARLEALREAVKEREREMEKLVEENQRERQK 303

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           A    +GE E+   L + L E+  +    +  E+
Sbjct: 304 ADAETQGERERVEALEARLRELKREREVSQDLES 337


>gi|206969500|ref|ZP_03230454.1| MutS2 family protein [Bacillus cereus AH1134]
 gi|229072054|ref|ZP_04205263.1| hypothetical protein bcere0025_42200 [Bacillus cereus F65185]
 gi|229081805|ref|ZP_04214297.1| hypothetical protein bcere0023_44330 [Bacillus cereus Rock4-2]
 gi|229180871|ref|ZP_04308206.1| hypothetical protein bcere0005_42150 [Bacillus cereus 172560W]
 gi|229192752|ref|ZP_04319710.1| hypothetical protein bcere0002_44030 [Bacillus cereus ATCC 10876]
 gi|206735188|gb|EDZ52356.1| MutS2 family protein [Bacillus cereus AH1134]
 gi|228590591|gb|EEK48452.1| hypothetical protein bcere0002_44030 [Bacillus cereus ATCC 10876]
 gi|228602428|gb|EEK59914.1| hypothetical protein bcere0005_42150 [Bacillus cereus 172560W]
 gi|228701393|gb|EEL53887.1| hypothetical protein bcere0023_44330 [Bacillus cereus Rock4-2]
 gi|228710988|gb|EEL62954.1| hypothetical protein bcere0025_42200 [Bacillus cereus F65185]
          Length = 786

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +    
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNED 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|156060197|ref|XP_001596021.1| hypothetical protein SS1G_02237 [Sclerotinia sclerotiorum 1980]
 gi|154699645|gb|EDN99383.1| hypothetical protein SS1G_02237 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1669

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 92/256 (35%), Gaps = 28/256 (10%)

Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438
            P +D                        + +    ++D + +   ++ I ++L+    +
Sbjct: 687 KPALDFDSLYHVVMECQRQQGIIQSQVNSISDLNTKLQDAEAQLRDTRVINEKLEAKKDE 746

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
                        +  +H ++    Q+ ++    + K S              +      
Sbjct: 747 LSKRVERLNDLSNRYRQHINEVVICQKSLRQDSQEMKKSMGNLK---------LVSTEES 797

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           +E   +++ I   + +++++                +   ++L +  F  L +++    R
Sbjct: 798 EEIKAQISRITELSEQIKQIRR-------------DKTQQEKLMDAEFKALGEKIVELQR 844

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
           +     A  ++N+V+VR+   Q   L  +F+ L  +  E++++ A++ A  ++       
Sbjct: 845 ENDRLKAVNDSNMVEVRKDKTQQ-DLNAKFKALGEKIVELQRENARLKALDDSNMV---- 899

Query: 619 SILHEVHIQIHQIESQ 634
             L +  ++I +++ Q
Sbjct: 900 -ELQQERLRIEELQKQ 914


>gi|323465576|gb|ADX69263.1| Replicative DNA helicase DnaB [Lactobacillus helveticus H10]
          Length = 464

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 3/122 (2%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +     S  E A+L  +   P  + +    +    +     Q ++  +           
Sbjct: 6   SQQIPHDSDAEKAVLGAIFIDPEAIADASAVVQPEDFYERANQIIYQAMLDLSDRGDAID 65

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  +   L +      L  +      + L  AT  A  V          AL +R    S+
Sbjct: 66  PLTLQDELNK---RNQLDDIGGISYVSELALATPTAAHVTYYAQIVHRKALLRRLISASQ 122

Query: 594 QK 595
           + 
Sbjct: 123 KI 124


>gi|189190000|ref|XP_001931339.1| myosin-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972945|gb|EDU40444.1| myosin-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1593

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 91/288 (31%), Gaps = 18/288 (6%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYY 424
              + A   +   +   +      E       T  +R       +     I++  ++    
Sbjct: 805  EMREAVIFVQSLARGYMTREKTEEARQVRAATTIQRVWRGSKDRKRFLVIRNSLIKFEAI 864

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            ++    R   L ++         R W+K    R  K     ++    V+     + + RE
Sbjct: 865  AKGFLLRKNLLDKRLGDAARMIQRNWRKQRYIRAYKKEINDII---TVQKLWRGRKARRE 921

Query: 485  AALLLTLINHPAILQEQYQELADIRYDN-----NELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +L         +  + +        N      + + L S + +   + K +       
Sbjct: 922  YKVLRAESRDLKNISYKLENKVVELTQNLGTMREQNKSLKSQVENYENQIKSYKE----- 976

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                R      K+L  +   AG+ +A       + ++          + R L  +++E+ 
Sbjct: 977  --RSRTLENRQKELQAEANQAGITAAKLSQMEDEYKKLQTSYEESNAKMRHLQEEEKELR 1034

Query: 600  KQIAQVTAKGEAEKTAILISI--LHEVHIQIHQIESQEAMIEGFGKMS 645
              + + T   E  K    I+      +  Q+ +++ Q  +++  G +S
Sbjct: 1035 ATLKRTTEDLEQSKRKSNITETEKVSLRQQLAELQEQVEIMKRAGPIS 1082


>gi|115384276|ref|XP_001208685.1| hypothetical protein ATEG_01320 [Aspergillus terreus NIH2624]
 gi|114196377|gb|EAU38077.1| hypothetical protein ATEG_01320 [Aspergillus terreus NIH2624]
          Length = 1341

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 70/229 (30%), Gaps = 22/229 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              ++ +++ + +K   +        K  A     +G  Q+L      +     +   + 
Sbjct: 291 IDELKTKMRVMEKKRAEDRDKIKNLEKLQAERDKFEGIIQKLQAKYQPQQMEIGELRKK- 349

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                  +       E+ + L        E+  L   +  +  +      E +  ++ E 
Sbjct: 350 -------LKEYESRAEEIERLQAEHESLMEMATLDREMAEETADAFKHECEALRMKVEEL 402

Query: 545 GFG--------ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-YKRFRLLSRQK 595
                      E L  +      +       E     +R+   +   +  ++   L  Q 
Sbjct: 403 QLEVEVLRDENEELSHVMSPEEKSSQGWLQMEKTNERLREALIRLRDMTQQQENELKDQI 462

Query: 596 EEIEKQIA-----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +E+++ +      +   +   EK  +  + + ++  Q+      E MIE
Sbjct: 463 KELQQDLEDYAAIRSQYESTKEKLLVSENNVEDLKQQLETALGAEEMIE 511


>gi|149036805|gb|EDL91423.1| rCG56136, isoform CRA_b [Rattus norvegicus]
          Length = 829

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 66/175 (37%), Gaps = 7/175 (4%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +   Q      KL+     +E  L    ++   + ++     A +   ++  ++L  
Sbjct: 613 GKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMNELEEKSRSTQAAL---DSAYRELTD 669

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
              ++  +        + + +  +   EL   L++   +A     T    + D+R   Q+
Sbjct: 670 LHKANAAKDSEVQEAALRREMKAK--EELSGALEKAQEEARQQQETLALQVGDLRLALQR 727

Query: 581 AL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           A  A  ++   L  +  E+++++ +   +   E +  + S    +  QI  +++ 
Sbjct: 728 AEQAAARKEDYLRHEISELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 781


>gi|311254317|ref|XP_001927973.2| PREDICTED: cingulin-like [Sus scrofa]
          Length = 1196

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 78/221 (35%), Gaps = 11/221 (4%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLTL 491
           Q+ +       G G    K    +D     + L +    K ++ ++  LRE  L  L   
Sbjct: 440 QVMELQDKLKRGQGPEPAKEMLMKDLLETRELLEEVVEGKQRIEEQLRLRERELTALKGA 499

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           +    +     +     +    + ++L   +     +      E   ++        L +
Sbjct: 500 LKE-EVASRDQEVEQVRQQYQRDAEQLRRSMQDATQDHAALEAE---RQKMSALVRGLQR 555

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ----KEEIEKQIAQVTA 607
           +L+    + G W    + N  ++R   Q+ L L      +  +     E +++++ Q  A
Sbjct: 556 ELEETSEETGHWQNMFQKNKEELRATKQELLQLRMEKEEMEEELGEKIEVLQRELGQARA 615

Query: 608 -KGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
             G+  +   L   L +   ++  +++++   E  GK   R
Sbjct: 616 GAGDTRQVEELKKELRQTQEELKDLQAEQQSQEVAGKHRER 656



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 95/300 (31%), Gaps = 31/300 (10%)

Query: 358  DPDSFIRCYGKTAFEKLIVESL------PLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
            D         ++  E    ++             W  E E  S      + E +   +  
Sbjct: 856  DDSKQALQELQSQLEDYKEKARREVADAQRQAKEWASEAEKTSGGLSRLQDETQRLRQAL 915

Query: 412  INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
                 D+       + +  RLQ L Q+   +        ++     ++    +  +    
Sbjct: 916  QASQADRDTARLDKELLAQRLQGLEQEAENKKRSQDDKSRQLKSLEEKVSRLEAELDEER 975

Query: 472  VKGKLSKKPSLREA----ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
               +L      R       L   L+   +  Q+   +   +   N +L+           
Sbjct: 976  STVELLTDRMNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKS------RLAS 1029

Query: 528  EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA---- 583
             + +  P     +L      EL ++L  + R+  +  +T       V++   Q       
Sbjct: 1030 SEGFQKPSASLSQLESLN-RELQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQH 1088

Query: 584  -------LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
                   L  R + L RQ +E E++I ++   G  +K    +   HEV+ Q+  +I++ E
Sbjct: 1089 VNDQKDQLSLRVKALKRQVDEAEEEIERLD--GLRKKAQRELEEQHEVNEQLQARIKALE 1146


>gi|306824798|ref|ZP_07458142.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071
          str. 73H25AP]
 gi|304433009|gb|EFM35981.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071
          str. 73H25AP]
          Length = 1617

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 13/89 (14%)

Query: 5  RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
          R+ ++       I ++  +  ++  +   +    +       HD    S   +  K  + 
Sbjct: 13 RERVEFARSR-DILDVANELQMELVQSGRDYRWKE-------HD----SLVISPDKNLWK 60

Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRL 92
           FS +  GD +S +  +    F +SV  L
Sbjct: 61 WFSRNTGGDAISLVETIKEVDFNQSVDFL 89


>gi|297670901|ref|XP_002813592.1| PREDICTED: TATA element modulatory factor [Pongo abelii]
          Length = 1006

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 81/273 (29%), Gaps = 10/273 (3%)

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
               +    +    + L   E E+          +LE      ++  K++ L       +
Sbjct: 425 DKVAEQCEPAESQPEAL--SEKEDVCKTVEFLNEKLEKREAQLLSLSKEKALLEEAFDNL 482

Query: 429 RDRLQ---QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           ++ +    +      +    + +   +  +        +   +  +   K      L  +
Sbjct: 483 KEXVFCKCEXSSSISSLKDEFTQRIAEAEKESSTSCKERDAAKKEIKNIKEELATRLNSS 542

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                L      ++   +E A +       L   +  L            E     L   
Sbjct: 543 ETADLLKEKDEQIRGLMEEGAKLNRSIQAALDSAYKELTDLHKANAAKDSEAQEAALSRE 602

Query: 545 --GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-ALALYKRFRLLSRQKEEIEKQ 601
                EL   L++   +A     T    + D+R   Q+   A  ++   L  +  E++++
Sbjct: 603 MKAKEELSAALEKAQEEARQQQETLAIQVGDLRLALQRTEQAAARKEDYLRHEISELQQR 662

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           + +   +   E +  + S    +  QI  +++ 
Sbjct: 663 LQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 694


>gi|167997891|ref|XP_001751652.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162697633|gb|EDQ83969.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 691

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 69/212 (32%), Gaps = 21/212 (9%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            L   F + +           +  R  D +  S +  +      +  KK S  E A    
Sbjct: 32  LLVLTFWRDLDLEKWRAELDDQGLRIGDNQENSLKNRRKLAESTRDFKKASNEEKA---- 87

Query: 491 LINHPAILQEQYQELADI----RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
               PA+L+   +E+ ++    ++  N    ++  L+                       
Sbjct: 88  -KAFPALLKGYQEEVDNLTKRAKFGENAFLNVYQKLYEAPDPVPALS--------SGAEL 138

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
              L +LD   R          +    +R        L +R RLL +Q EE  K+I ++ 
Sbjct: 139 ATRLAELDSDYRKMKQELEEYRSEAAHLRNQQATVRRLEERNRLLEQQMEEKVKEIVEMK 198

Query: 607 AKGEAEKTAILISILHE----VHIQIHQIESQ 634
            +  AE+    I I+ E    +  Q+   +  
Sbjct: 199 QRSLAEENQKNIEIIREREAFLQNQLRAAKES 230


>gi|157126537|ref|XP_001660917.1| chromosome-associated kinesin KIF4A (chromokinesin) [Aedes aegypti]
 gi|108873223|gb|EAT37448.1| chromosome-associated kinesin KIF4A (chromokinesin) [Aedes aegypti]
          Length = 1173

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 70/220 (31%), Gaps = 16/220 (7%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK--LSKKPSLREAAL 487
            RL  + Q+   E   Y    K+N      K    R      +      + +   +E  +
Sbjct: 360 RRLNAIIQELRLELLAYSAGGKENVPGAGNKSGIIRSNSDHHLVNGFIPTGEAIRQEKEM 419

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           +  +      LQ   Q++A+ +      +K+   + +   +      ++  Q + +    
Sbjct: 420 MDKIRTLQQQLQSALQDMANDQLRTLTAEKIVEEIEALLAQSPDSDLKQGIQAILDGYKE 479

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ--- 604
           E             L  +  E          Q+ + +    R L+R+  E+++++ +   
Sbjct: 480 ETASIRTESQVSDSLLHSAAEEFQNRSDTHTQKQMKIRDELRQLNREL-ELKEELHRKCL 538

Query: 605 ----------VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                       +    ++       + E+  QI ++  Q
Sbjct: 539 GNISNLTFTVDDSSSSNDRLEEYEDKIKELEKQIEELNDQ 578


>gi|239814845|ref|YP_002943755.1| ATP-dependent chaperone ClpB [Variovorax paradoxus S110]
 gi|239801422|gb|ACS18489.1| ATP-dependent chaperone ClpB [Variovorax paradoxus S110]
          Length = 873

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 70/203 (34%), Gaps = 2/203 (0%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R ++K          +  +++    K ++     + + A++       
Sbjct: 317 YRKYIEKDAALERRFQKIIVGEPSVEATIAILRGLQEKYEVHHGVQITDPAIVAAAELSD 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL-D 554
             + +++     I   +    K+   + S            I  ++          +   
Sbjct: 377 RYITDRFLPDKAIDLIDEAAAKIKIEMDSKPEVMDRLDRRLIQLQIEREAVRREKDEASQ 436

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           ++        A  +  I D  + +Q   A  +    +    ++I+ +I +   KG+  K 
Sbjct: 437 KRFGLIEDEIARLQKEIADYDEIWQAEKAQAQGSAKIREDIDKIKFEIEEWKRKGDFNKL 496

Query: 615 AIL-ISILHEVHIQIHQIESQEA 636
           A L    L  +  ++ + E  EA
Sbjct: 497 AELQYGQLPALEKRLREAEESEA 519


>gi|89094702|ref|ZP_01167638.1| hypothetical protein MED92_02424 [Oceanospirillum sp. MED92]
 gi|89081048|gb|EAR60284.1| hypothetical protein MED92_02424 [Oceanospirillum sp. MED92]
          Length = 1067

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 70/244 (28%), Gaps = 19/244 (7%)

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQ--LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
             + I  ++ +    Q I   L++  L Q  I           K  +  + +        
Sbjct: 41  VNSSIPSEQEKRAIQQKIISALKEQELLQNKIGSLQSELELQPKVLQAIETRLSESTSPL 100

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD--- 525
             +       +   RE      ++       E  Q  +         Q +   L +    
Sbjct: 101 PDIAYEITLAELEKRETQTNARVLELNRTQAEYRQTASQAE---ERQQTIREQLANLKFV 157

Query: 526 --------FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT-TEANIVDVRQ 576
                   F E      +       E    +   +L+  V       A      +    +
Sbjct: 158 DFSDDKPQFAENSDLATQLQSASFAEYNLRQQALELELLVLPKRAEIAKLNGQLLERELK 217

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIESQE 635
              Q L     F+ + RQ+ E E  + ++    EA+     I +L + + Q+  Q+ +  
Sbjct: 218 LQNQYLNSLGEFKQV-RQRAEAELALRELEKSAEADSEVQAIQLLRKENQQLSQQLRALL 276

Query: 636 AMIE 639
             IE
Sbjct: 277 VDIE 280


>gi|310822360|ref|YP_003954718.1| adventurous-gliding motility protein Z [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395432|gb|ADO72891.1| Adventurous-gliding motility protein Z [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1443

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 92/268 (34%), Gaps = 17/268 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
               +     K + ++      + +  +    +     + D  L+ + ++     L ++ 
Sbjct: 257 HEKDVELQGLKMQVDDLLRRFNEAQTAMLQKEREHGATVDDLLLQKFSAEK---DLIEVV 313

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                + +   R          ++       ++   K +     +  E  +    +    
Sbjct: 314 AAKEKDINVLKREVNNRDEELSRRATELDTARTEYDKLERQYGVATLEFEVREQKL--DE 371

Query: 497 ILQEQYQELADIRYDNNELQ-KLWSFLFSDFVEQKYFLPE--EIHQRLC--ERGFGELLK 551
            ++    ++A +R    EL   L   +            E   + +RL   E+     ++
Sbjct: 372 TIRGHEADIAQLRKRGEELDSTLAQTVSERDQRYAELEGEIQALQERLQQTEQERDTSVR 431

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            L+++   A    A ++A I  + +  + AL        L++Q  E+E  +A+   + + 
Sbjct: 432 ALEQRALAAEDHGAQSDAEIERL-KAERAALEAR-----LNQQIAELEADVARTIGERDQ 485

Query: 612 EKTAILISILHEVHIQIHQIESQEAMIE 639
            K         E+  Q+++ +++ A +E
Sbjct: 486 LKQEKDAQE-EELTQQLNERDAKLATLE 512


>gi|291085970|ref|ZP_06354520.2| putative periplasmic binding protein [Citrobacter youngae ATCC
           29220]
 gi|291069026|gb|EFE07135.1| putative periplasmic binding protein [Citrobacter youngae ATCC
           29220]
          Length = 1096

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 71/218 (32%), Gaps = 18/218 (8%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
                   + +      K     + +   + +   ++L + K S + + +   ++    N
Sbjct: 11  AATAPDAKQLTQELEQAKAAKPAQPETVEALQSALNALEERKGSLERATQYQQVID---N 67

Query: 494 HPAILQEQYQELADIR---------YDNNEL-QKLWS----FLFSDFVEQKYFLPE-EIH 538
            P +      +L+++R            + L Q++       L      Q+      EI 
Sbjct: 68  FPKLSATLRAQLSNLRDEPRNVPTGLTTDALNQEILQVSSQLLEKSRQAQQEQDRAREIA 127

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    +   +      +  + +A          Q     L        L++     
Sbjct: 128 DSLSQLPQQQTDARRQLNELERRIGTANANPAQNQAMQAESAKLKALVDELELAQLSANN 187

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +++A++ ++   +++  L + L  +  Q++    +EA
Sbjct: 188 RQELARMRSELAEKQSQQLDAYLQALRNQLNSQRQREA 225


>gi|261327693|emb|CBH10670.1| flagellar attachment zone protein, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 1748

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 75/222 (33%), Gaps = 15/222 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK---------GK 475
            + + ++L+ L     +E         +  + R Q+  S      +             +
Sbjct: 632 LRDLVEKLRDLADNQASELELLKLQKTQANQIRAQRNLSTFRGDDTAEPVYCVTLDELRE 691

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            ++     E  L         +L  Q   LA++   + E +KL +       E +     
Sbjct: 692 QTEHCDQVERELERQREQCQNLLNAQDDLLAELSGVSEEKEKLEAECERLEAELRQMEE- 750

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
               RL E+G  E+ ++L+ +  +        E     +        +         R+ 
Sbjct: 751 --KSRLSEQGLSEMTQRLEEKQAEIEGLLENLEQLDEQLEALRAAEKSAQAHIEARDREI 808

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEA 636
            ++++++       +  KT  L+  L + +  + ++ + QEA
Sbjct: 809 SDLQQRLE--GEIDDHIKTTALLEELRKHYNNLEELFDKQEA 848



 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 64/205 (31%), Gaps = 8/205 (3%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            ++L +  +    E+       +  A   ++      L  +   K     +    E   L 
Sbjct: 1092 EKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLA 1151

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
              ++      E  +   ++     E +KL   L     E +    E     L      +L
Sbjct: 1152 EALDLK--AAENEKLAEELDLKAAENEKLAEELELKVAENEKLAEEL---ELKAAENEKL 1206

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
             ++L+ +  +    +   E    +  +   + L L        +  EE+E + A+     
Sbjct: 1207 AEELELKAAENEKLAEELELKAAE-NEKLAEELELKVAEN--EKLAEELELKAAENEKLA 1263

Query: 610  EAEKTAILISILHEVHIQIHQIESQ 634
            E  +     +      +++   E++
Sbjct: 1264 EELELKAAENEKLAEELELKAAENE 1288



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 67/206 (32%), Gaps = 10/206 (4%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            ++L +  +  + E+       +  A   ++      L  +   K     +    E   L 
Sbjct: 1176 EKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLA 1235

Query: 490  TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                   + + E  +   ++     E +KL   L     E +    E     L      +
Sbjct: 1236 ---EELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEEL---ELKAAENEK 1289

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L ++L+ +V +    +   E    +  +   + L L  +     +  EE+E + A+    
Sbjct: 1290 LAEELELKVAENEKLAEELELKAAE-NEKLAEELEL--KAAENEKLAEELELKAAENEKL 1346

Query: 609  GEAEKTAILISILHEVHIQIHQIESQ 634
             E  +     +      +++   E++
Sbjct: 1347 AEELELKAAENEKLAEELELKAAENE 1372



 Score = 37.9 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 85/272 (31%), Gaps = 14/272 (5%)

Query: 378  SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-QAIRDRLQQLF 436
            S+ L +        N+     D   +      +   ++ D+  +     Q++ ++L  + 
Sbjct: 896  SVTLDEYNDHMHRSNQFQQENDLLRQQLQQANDERENLHDRLEQLMAENQSLSEQLHNMH 955

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            ++   E         +N R  ++        +  +++   S+         +  L+    
Sbjct: 956  EELEREERDRSGVTLQNERLAEEIQRKTAENEQLVLENNKSRSDIRNLNVQVQRLMEELE 1015

Query: 497  I-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK---- 551
            +   E  +   ++     E +KL   L     E +        +        E L+    
Sbjct: 1016 LKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEALDLKAAENEKLAEELELKVA 1075

Query: 552  QLDRQVRDAGLWSATTEANIVDVR--QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            + ++   +  L  A  E    ++       + LA     +    +K   E ++     + 
Sbjct: 1076 ENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEK 1135

Query: 610  EAEKTA------ILISILHEVHIQIHQIESQE 635
             AE+          ++   ++    ++  ++E
Sbjct: 1136 LAEELELKAAENEKLAEALDLKAAENEKLAEE 1167



 Score = 37.6 bits (85), Expect = 6.2,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 66/216 (30%), Gaps = 16/216 (7%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            ++L +  +    E+       +  A   ++      L  +   K     +    E   L 
Sbjct: 1204 EKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLA 1263

Query: 490  TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                   +   E  +   ++     E +KL   L     E +    E   +        E
Sbjct: 1264 ---EELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAE 1320

Query: 549  LLK----QLDRQVRDAGLWSATTEANIVDVR------QGYQQALALYKRFRLLSRQKEEI 598
             L+    + ++   +  L +A  E    ++       +   + L L  +     +  EE+
Sbjct: 1321 ELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELEL--KAAENEKLAEEL 1378

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            E + A+     E  +     +      +++   E++
Sbjct: 1379 ELKAAENEKLAEELELKAAENEKLAEELELKAAENE 1414



 Score = 37.2 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 65/216 (30%), Gaps = 16/216 (7%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            ++L +  +    E+          A   ++      L  +   K     +  + E   L 
Sbjct: 1134 EKLAEELELKAAENEKLAEALDLKAAENEKLAEELDLKAAENEKLAEELELKVAENEKLA 1193

Query: 490  TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                   +   E  +   ++     E +KL   L     E +    E   +        E
Sbjct: 1194 ---EELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAE 1250

Query: 549  LLK----QLDRQVRDAGLWSATTEANIVDVR------QGYQQALALYKRFRLLSRQKEEI 598
             L+    + ++   +  L +A  E    ++       +   + L L        +  EE+
Sbjct: 1251 ELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAEN--EKLAEEL 1308

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            E + A+     E  +     +      +++   E++
Sbjct: 1309 ELKAAENEKLAEELELKAAENEKLAEELELKAAENE 1344


>gi|295667794|ref|XP_002794446.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226285862|gb|EEH41428.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 2486

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 43/419 (10%), Positives = 120/419 (28%), Gaps = 25/419 (5%)

Query: 234  LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
             N+P+  +      L+     L             +      L      + S       +
Sbjct: 1450 FNTPQPEMEETSGELFGGGPRLIPSYAIRSNAPSPSPQGSRPLFANVPKIDSAFGGPAHH 1509

Query: 294  VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF-VL 352
            ++S   +A+++    +    +P I    D DD         +                 +
Sbjct: 1510 ILSPQRSAISDSNSPICHLNNPEIEHVSDWDDAISVGEDAKLRQRSRFFDRHVNDIVGGI 1569

Query: 353  LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK--RETENRSFNTPDERAELEIHLKN 410
            +    DP        + + + +    +   +      R       ++  +  + E   + 
Sbjct: 1570 IEDRLDPLERALGVIQQSIDIIAANQVLNQNHNQNTRRSASAGVEHSDADDEDDEEDDEA 1629

Query: 411  CINHIKDQKLRYY-----YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
                 +    R         QA+ + L       I                       + 
Sbjct: 1630 LRYRSRSPLNRRVRHVNSIKQAVAEAL-ASQVPRIEVPVPPPAPVIDLTEIHVALAELKT 1688

Query: 466  LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY-----QELADIRYDNNELQKLWS 520
            L+    V+        L++  ++  +  HP +            +  ++     LQ +  
Sbjct: 1689 LVAPKPVEPVPEPPIDLKQ-VIIDAISEHPRLNAPVESVSHTDNIEALKMQVEGLQTMLR 1747

Query: 521  FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ-GYQ 579
             +  +  E++Y +  +    +       LL+  +            TE    D+++    
Sbjct: 1748 -VADERAEKEYQIRRDAQDSV--AQCQRLLRIAEEDAAYHRELVMKTEEAFRDLKERTIP 1804

Query: 580  QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH----EVHIQIHQIESQ 634
            +   + ++ RLL  Q+E ++  +++++ K  +      +        +   Q+ +++ +
Sbjct: 1805 ETERIERQSRLLQEQQESLQLTLSELSGKNIS--LEETLDEYRVSADQWRSQVERVKKE 1861


>gi|219125089|ref|XP_002182821.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405615|gb|EEC45557.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 887

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 82/253 (32%), Gaps = 44/253 (17%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKK-----NARHRDQKGPSQRLMQSSLVKGKLS- 477
           Y     +RL+ +  +          +  +      A   D    +  L++  L +G+L  
Sbjct: 253 YRGEFEERLRAVLDEVKRAQGKMLLFVDEIHLVLGAGKSDGAMDAANLLKPMLARGELRM 312

Query: 478 -------------KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                        +K +  E      ++N P++L      L  +         +   + S
Sbjct: 313 IGATTLEEYRKHIEKDAAFERRFQQVIVNEPSVLDTI-SMLRGLSDRYETHHGVR-IMDS 370

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
             V         I  R       +L+ +   + R         ++    + Q  +Q L L
Sbjct: 371 ALVTAAQLSDRYITHRFNPDKSIDLIDEAAARKRTTL------DSRPERIDQLERQILQL 424

Query: 585 ---------------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                           +R   +  +   +++++A + AK +A++       L E+  ++ 
Sbjct: 425 EIESTALGREKDKESKRRRTAIQEEIANLKEELAPLNAKWQADRGRA--EELKEIKEKLT 482

Query: 630 QIESQEAMIEGFG 642
            +E++ A  E  G
Sbjct: 483 TLEAKAASAERTG 495


>gi|198474044|ref|XP_002132614.1| GA25794 [Drosophila pseudoobscura pseudoobscura]
 gi|198138224|gb|EDY70016.1| GA25794 [Drosophila pseudoobscura pseudoobscura]
          Length = 2166

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 74/261 (28%), Gaps = 22/261 (8%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1776 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1835

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1836 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1888

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFL-----PEEIHQRLCER------GFGELL 550
             +    +   +   ++    L     +               ++L            ELL
Sbjct: 1889 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1948

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
             +       A            ++R     A    K  + L +Q +E++ ++ +  A   
Sbjct: 1949 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 2008

Query: 608  KGEAEKTAILISILHEVHIQI 628
            KG  +    L   + E+  ++
Sbjct: 2009 KGGKKAIQKLEQRVRELENEL 2029


>gi|195386602|ref|XP_002051993.1| myosin heavy chain [Drosophila virilis]
 gi|194148450|gb|EDW64148.1| myosin heavy chain [Drosophila virilis]
          Length = 2153

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 74/261 (28%), Gaps = 22/261 (8%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1763 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1822

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1823 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1875

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFL-----PEEIHQRLCER------GFGELL 550
             +    +   +   ++    L     +               ++L            ELL
Sbjct: 1876 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1935

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
             +       A            ++R     A    K  + L +Q +E++ ++ +  A   
Sbjct: 1936 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1995

Query: 608  KGEAEKTAILISILHEVHIQI 628
            KG  +    L   + E+  ++
Sbjct: 1996 KGGKKAIQKLEQRVRELENEL 2016


>gi|269926663|ref|YP_003323286.1| RNA binding metal dependent phosphohydrolase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790323|gb|ACZ42464.1| RNA binding metal dependent phosphohydrolase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 509

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA- 581
                  +    E +  R+ E    +  + L     +A       EA + + R    +A 
Sbjct: 25  LRFISNNQIREAERLRDRISEEAATKQKQILLEAQAEAIRIRNEAEAEVKERRADLARAE 84

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH-------IQIHQIESQ 634
             L ++   L R+ E +E++  ++ A+   +++  + + L ++         Q  ++  +
Sbjct: 85  RRLQQKEENLDRKIEALERREQKIQAR--DQESERIRNELEKIKQEQMLVLQQRAEMTKE 142

Query: 635 EAMIE 639
           EA  E
Sbjct: 143 EAKAE 147


>gi|217973461|ref|YP_002358212.1| exodeoxyribonuclease V subunit gamma [Shewanella baltica OS223]
 gi|217498596|gb|ACK46789.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS223]
          Length = 1274

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 69/527 (13%), Positives = 150/527 (28%), Gaps = 30/527 (5%)

Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG--LLID 191
                    +L+   + +  I++++L       +      R       +  E    L   
Sbjct: 125 TTNSADTSEHLNTSDMTADDIKLYQLCGRIADIFDQYLVYRPDWILAWEQNEHPESLTKP 184

Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNF 251
            +            LI   R    Q      R     + +  LN+P+T L    + L+ F
Sbjct: 185 LNEDQRWQPILWRALIAFNRDELNQSHYH--RANLHSDLIAALNNPDTSLAQLPQRLFVF 242

Query: 252 FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLW 311
             +    Q              I+L               +N          + QL  LW
Sbjct: 243 GISSMAPQTLEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQYAGKRQLAELW 302

Query: 312 KLSPRI--VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
           +    +   L  +    G       ++L   H   G+ V         DP S        
Sbjct: 303 EDKLEVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNDPHSHASMLHGV 362

Query: 370 AFEKLIVESLPL---VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
            ++ L +++L      D    +  ENR     D+++       + +  +  + L  +  +
Sbjct: 363 QYDILEMQTLDRVLGPDAELYQNVENRRLLKRDDQSIRVKSCHSPLREV--ETLHDHLLE 420

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + +      +  +        Y          K     +  +   +G   + P +    
Sbjct: 421 LLSNHADLTPKDIVVMMPDVAAYAPYIDAVFSAKQGLHYIPYAIADRGAAQESPLINSFL 480

Query: 487 LLLTL------INHPAILQEQYQELADIRYDNNELQKLWSFL----FSDFVEQKYFLPEE 536
            LL +      +     + E    L   + D++ELQ +  +L         +++  L + 
Sbjct: 481 NLLGINQSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRDEQSRLKQG 540

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +           + + +                 +  +     QAL     F  +  +  
Sbjct: 541 VPAFEQNSWAFGIKRLILGYALSDDAPLYQDHLIVTGIEGQSAQALGKLLNFIEVLDETA 600

Query: 597 EIEK-------QIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQ 634
           +I         ++A++T   +A  +        L E+   I  +E +
Sbjct: 601 QILALPQVGALRLAELTELLDAFYDTDEDEREQLQEIRDAIAALEQE 647


>gi|126343802|ref|XP_001380636.1| PREDICTED: similar to coiled-coil domain containing 88, partial
           [Monodelphis domestica]
          Length = 528

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 70/218 (32%), Gaps = 28/218 (12%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           Q +R+RL  L ++      G      ++           RL Q              +E 
Sbjct: 102 QELRERLGALDKEVRGARQGQEEARVQHQALLRDHEALGRLQQ-------------RQEV 148

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-------EIH 538
            L   L  H  +       L ++   + ELQ     L +   + +               
Sbjct: 149 ELEGLLGRHREL----KATLRELELSHKELQGRHEQLLAQRAQMEAQEVALQGERERLAQ 204

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            RL ++G  E L++L  +   A +  A       ++ QG +  L        L R + E 
Sbjct: 205 DRLHQKGLEEELRRLQSEHERAQVSLADASRERGEL-QGERGELRGRLARLELERAQLEA 263

Query: 599 EKQ-IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           + Q + +   + +     +      ++  ++   + +E
Sbjct: 264 QGQGLREANQRLDLSVCQLTTQ--CQLLTELRAAQEEE 299


>gi|123455955|ref|XP_001315717.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121898402|gb|EAY03494.1| hypothetical protein TVAG_450670 [Trichomonas vaginalis G3]
          Length = 1031

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 41/329 (12%), Positives = 108/329 (32%), Gaps = 33/329 (10%)

Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER 401
            I    ++    +  +D    +     +A E+   +        +  +          + 
Sbjct: 311 HIINKVISLSPSTIKKDIQDILNGKTSSAIEESFAKITEYYKQNFIEQQNTSEKEIIAKL 370

Query: 402 AELEIHLKNCINH------IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
             +     + I+       I+      Y   +IR  LQ   Q+                 
Sbjct: 371 RNVVASNISFIHQLIDSKLIQSWSEVPYSLDSIRQLLQTEIQQIKESIQKNNIQLPTVET 430

Query: 456 HRDQ----KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPAILQEQYQELAD 507
             +        ++++ + S    K  +  S +E  LL  +I     + A++Q      + 
Sbjct: 431 IYNTFLFEMPSAEQITEISNYFEKFEETNSPKELELLGIVIQCIQSNFALVQYSNLNKSK 490

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
           +   +NE++ L + + +     K    +E  +   E    +L K+L+         + + 
Sbjct: 491 VEKYSNEIKSLQNNIEAMNESAKAIKSDERARY--EAEISQLKKELEEMSNQNNEETDSE 548

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-----------QIAQVTAKGEAEKTA- 615
           E N+ +          L  + + L    EE+++           ++ ++ +K    +   
Sbjct: 549 EQNVNNSDIIEFATRDLNNQNQELQNCVEELKRMVDEAKADSTTKMQEIESKNNENEQQL 608

Query: 616 -----ILISILHEVHIQIHQIESQEAMIE 639
                 L   + E++ +I +++ +  ++E
Sbjct: 609 KQQISELQDKIIELNSEIQKMKDENDILE 637


>gi|29436380|gb|AAH49849.1| MYH9 protein [Homo sapiens]
          Length = 1374

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 87/265 (32%), Gaps = 28/265 (10%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EKL ++     +     E E        ++ ELE    +    +++++ R  + QA + 
Sbjct: 880  AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKK 939

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++QQ  Q+   +        +K    +       + ++   +  +       +E  LL  
Sbjct: 940  KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEEQIILEDQNCKLAKEKKLLE- 998

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +                      E    +L 
Sbjct: 999  -----DRIAEFTTNLTEEEEKSKSLAKLKNK--------------------HEAMITDLE 1033

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L R+ +       T      D      Q   L  +   L  Q  + E+++    A+ E
Sbjct: 1034 ERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVE 1093

Query: 611  AEKTAILIS--ILHEVHIQIHQIES 633
             E     ++   + E+  QI +++ 
Sbjct: 1094 EEAAQKNMALKKIRELESQISELQE 1118


>gi|24762816|ref|NP_523860.2| zipper, isoform A [Drosophila melanogaster]
 gi|7291892|gb|AAF47311.1| zipper, isoform A [Drosophila melanogaster]
          Length = 2056

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D +     AA  +   +   L        +     ED     +       + L       
Sbjct: 1689 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1748

Query: 382  VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                  +  ++          AE+    ++  +  + ++        + + +     K  
Sbjct: 1749 AAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1808

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                   R   + A   ++    Q   +  L +   S+K  L+   L   L N  +  Q+
Sbjct: 1809 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1865

Query: 501  QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                 A +   N EL+   + +           +         + ++L   G   LL+Q 
Sbjct: 1866 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1925

Query: 554  DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610
              +  D  +   T         V Q  +Q   L  R +LL R  +E E+++  + T K +
Sbjct: 1926 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1985

Query: 611  AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648
             ++    +    E ++ +I+ ++++     G G  S RL
Sbjct: 1986 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 2024


>gi|331086030|ref|ZP_08335113.1| hypothetical protein HMPREF0987_01416 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330406953|gb|EGG86458.1| hypothetical protein HMPREF0987_01416 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 635

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 13/90 (14%)

Query: 5  RDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
           ++ ++ +     ++L   YV    R         +Y         +  S   N  K  +
Sbjct: 2  EEYTREQIQRADDTDL---YVFLSGRGEQFKRCGKEYRWL------RHDSVMIN--KNEW 50

Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          Y FS +  G  + F+    G SF E+V+ L
Sbjct: 51 YRFSQNKGGHAIDFMKEFYGLSFAEAVKEL 80


>gi|297675863|ref|XP_002815872.1| PREDICTED: centrosomal protein of 120 kDa-like isoform 1 [Pongo
           abelii]
          Length = 986

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 645 PRETLEYKAALELEMWKEIQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 702

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++     S      ++    + ++  + + +Q S+ + K   
Sbjct: 703 AEYTILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDC 762

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   +  L           Q+L D       L+K +         +     +  
Sbjct: 763 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 819

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 820 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 876

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+   +  A  E +        L ++  +++++  QE
Sbjct: 877 LEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 914


>gi|228954821|ref|ZP_04116841.1| hypothetical protein bthur0006_41880 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229112016|ref|ZP_04241559.1| hypothetical protein bcere0018_42590 [Bacillus cereus Rock1-15]
 gi|228671339|gb|EEL26640.1| hypothetical protein bcere0018_42590 [Bacillus cereus Rock1-15]
 gi|228804810|gb|EEM51409.1| hypothetical protein bthur0006_41880 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 786

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +    
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNED 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|205277392|ref|NP_001128512.1| dynactin subunit 1 isoform 3 [Homo sapiens]
          Length = 1253

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575



 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421



 Score = 37.9 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310


>gi|218233457|ref|YP_002369349.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           cereus B4264]
 gi|228960821|ref|ZP_04122456.1| hypothetical protein bthur0005_42770 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229048260|ref|ZP_04193828.1| hypothetical protein bcere0027_42280 [Bacillus cereus AH676]
 gi|229129836|ref|ZP_04258802.1| hypothetical protein bcere0015_42760 [Bacillus cereus BDRD-Cer4]
 gi|229147111|ref|ZP_04275470.1| hypothetical protein bcere0012_42480 [Bacillus cereus BDRD-ST24]
 gi|229152748|ref|ZP_04280932.1| hypothetical protein bcere0011_42810 [Bacillus cereus m1550]
 gi|296505027|ref|YP_003666727.1| DNA mismatch repair protein mutS [Bacillus thuringiensis BMB171]
 gi|226723046|sp|B7HF67|MUTS2_BACC4 RecName: Full=MutS2 protein
 gi|218161414|gb|ACK61406.1| MutS2 family protein [Bacillus cereus B4264]
 gi|228630726|gb|EEK87371.1| hypothetical protein bcere0011_42810 [Bacillus cereus m1550]
 gi|228636360|gb|EEK92831.1| hypothetical protein bcere0012_42480 [Bacillus cereus BDRD-ST24]
 gi|228653527|gb|EEL09399.1| hypothetical protein bcere0015_42760 [Bacillus cereus BDRD-Cer4]
 gi|228722985|gb|EEL74362.1| hypothetical protein bcere0027_42280 [Bacillus cereus AH676]
 gi|228798843|gb|EEM45822.1| hypothetical protein bthur0005_42770 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296326079|gb|ADH09007.1| DNA mismatch repair protein mutS [Bacillus thuringiensis BMB171]
          Length = 786

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIEQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +    
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNED 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|45433533|ref|NP_956114.2| eukaryotic translation initiation factor 3 subunit A [Danio rerio]
 gi|44890368|gb|AAH66670.1| Eukaryotic translation initiation factor 3, subunit 10 (theta)
           [Danio rerio]
          Length = 1267

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 80/239 (33%), Gaps = 25/239 (10%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             + ++  +++R   +       + +               ++ A     K   +   + 
Sbjct: 509 PFLQNMPSEQIRNQLTAMSSSLAKAIQVIKPASILQDHEEQRQQAITAYLKNARKEHQRI 568

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF-VE 528
              +  + ++    E+                 +E  ++     ELQK+          E
Sbjct: 569 LARRQTIEERKERLESL-------------NIQREKEELEQREAELQKVRKAEEERLRQE 615

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            K    E I Q   +     + ++L++  +      A  + +I D+ +       + K+ 
Sbjct: 616 AKEREKERIMQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEE-LDPDFIMAKQV 674

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI----------QIHQIESQEAM 637
             L ++K+E+++++     K +  + A  +  +  +            ++ +++ +E +
Sbjct: 675 EQLEKEKKELQERLKNQEKKIDYFERAKRLEEIPLIKKAYEEQRIKDMELWELQEEERI 733


>gi|17233290|ref|NP_490380.1| replicative DNA helicase [Nostoc sp. PCC 7120]
 gi|17135812|dbj|BAB78358.1| replicative DNA helicase [Nostoc sp. PCC 7120]
          Length = 454

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 6/124 (4%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L  +    E A+L  ++  P  +      L    +     + ++      + + K    
Sbjct: 13  RLPPQSIEAEEAILGGIMLDPEAMSRIGDRLISEAFYVGAHKDIYQAAHRLYGQGKPTDL 72

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I   L + G       L R    + L +                 +    + R L + 
Sbjct: 73  LSITNWLSDHGL------LFRIGGRSKLATLVDRTVSAINIDALADLVMEKYQRRQLIKA 126

Query: 595 KEEI 598
             EI
Sbjct: 127 GNEI 130


>gi|326923519|ref|XP_003207983.1| PREDICTED: disks large homolog 5-like, partial [Meleagris
           gallopavo]
          Length = 1230

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 26/265 (9%), Positives = 84/265 (31%), Gaps = 18/265 (6%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           +           +    +  + + +   + +      ++    + +   +    Q   +R
Sbjct: 328 QAEEENRRLQKQIDMLMKQRDTAIHFQQQYSSSLRRFESVQQELSNATAQNKELQREMER 387

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           LQ    ++ T      +  +K    RD      RL+ S   +          E  L  + 
Sbjct: 388 LQSEVTRFKTMQLKAAKDSEKYKEERDSVFNEYRLIMSERDQVIKEVDKLQTELELAESK 447

Query: 492 INH----PAILQEQYQEL--------ADIRYDNNELQKL---WSFLFSDFVEQ-KYFLPE 535
           + +      +  E+ + L         DI   N E++ L   +  +  +  E  +     
Sbjct: 448 LKNTSSEKRVASEEMEALRQIQDSATLDIERANKEIEMLRKQYEAMSQELKEAVQEAEVA 507

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +  +    +   +++ + +             +  + D+ +  +    + K+     R+ 
Sbjct: 508 KCRRDWAFQERDKIVAERESIRTLCDNLRRERDRAVSDLAEALRNLDDMRKQKNDAVREL 567

Query: 596 EEIEKQIAQVTAKGEAEKTAILISI 620
           +E+++++       +  +   L++ 
Sbjct: 568 KELKEKME--NQLEKEARFRQLMAH 590


>gi|289548463|ref|YP_003473451.1| chromosome segregation protein SMC [Thermocrinis albus DSM 14484]
 gi|289182080|gb|ADC89324.1| chromosome segregation protein SMC [Thermocrinis albus DSM 14484]
          Length = 1165

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 14/236 (5%)

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
           E E   +  +  + D +LR    + + D L+   +K   E      Y +   R R+ +  
Sbjct: 172 EYEEKKQKALADLGDVELRIRELRLLMDELEVHMEKLKEEVRKLEEYRELEERRRELQIK 231

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
              L++ +       +    +E  L   L    ++ Q++ ++  ++     +L++L   L
Sbjct: 232 L--LVKEAQQIKTQLETIESKEKVLREELA---SLRQQEEEKQGELNLLEEKLKELREKL 286

Query: 523 FSDFVEQKYFL--PEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                         E I  RL +  R   ELL Q     R         +   ++     
Sbjct: 287 LPHREMVGRLSQKLESISNRLQQIARTKEELLDQRTTLERQLEHLKHDADRLRIEKEDLA 346

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            Q +   +         EE++K + +  +             L  V  +I ++E  
Sbjct: 347 HQLIQREEELTEDEVMLEELQKTLQEKES-----FLKASFGELESVEERIKKLEGT 397


>gi|194220584|ref|XP_001916761.1| PREDICTED: dynactin 1 (p150, glued homolog, Drosophila) [Equus
           caballus]
          Length = 1280

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 419

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 479

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595



 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441



 Score = 37.9 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330


>gi|148666657|gb|EDK99073.1| dynactin 1 [Mus musculus]
          Length = 1280

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%)

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
                  L +L    +      +   +   +  DL              L ++    +  
Sbjct: 238 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 297

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                      L  E         ++E E       +   +LEI          D     
Sbjct: 298 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 357

Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Y  + + ++  +L    +           +     +  +  +Q L      + +L ++ S
Sbjct: 358 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELS 417

Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538
             E+ +        A L  +E  + L D   +  E +++L   +       +     + +
Sbjct: 418 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 477

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R  E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    
Sbjct: 478 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 537

Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
           ++   +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 538 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 224 VRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441



 Score = 37.2 bits (84), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  +  +A + ++ +   Q          + ++   L R+
Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330


>gi|119573385|gb|EAW53000.1| lamin A/C, isoform CRA_d [Homo sapiens]
          Length = 760

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 219 DSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTAL 278

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ + ++   + 
Sbjct: 279 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 334

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 335 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 380

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 381 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 437

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 438 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 491

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 492 KLALDMEIHAYRKLLEGEE 510


>gi|119573383|gb|EAW52998.1| lamin A/C, isoform CRA_c [Homo sapiens]
          Length = 790

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 219 DSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTAL 278

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ + ++   + 
Sbjct: 279 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 334

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 335 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 380

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 381 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 437

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 438 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 491

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 492 KLALDMEIHAYRKLLEGEE 510


>gi|118588138|ref|ZP_01545548.1| replicative DNA helicase [Stappia aggregata IAM 12614]
 gi|118439760|gb|EAV46391.1| replicative DNA helicase [Stappia aggregata IAM 12614]
          Length = 494

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 50/170 (29%), Gaps = 26/170 (15%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           + + +++     +L+   +  E  LL  ++ +          L    +     Q ++  +
Sbjct: 4   TLQKVETEEDIQRLAPHNAEAERQLLGAILVNNETFYRVSDFLEPHHFFVPAHQDIYEKI 63

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                  K   P  +              ++        L     +A  +   + Y + +
Sbjct: 64  SHLIRAGKTASPITLKTFYPAN------AKIADLSATQFLLRLAGDAASIINAEDYGRTI 117

Query: 583 ALYKRFRLL--------------------SRQKEEIEKQIAQVTAKGEAE 612
                 R L                    S+Q ++ E+++ ++   G +E
Sbjct: 118 YDLAIRRNLIRIGEDMVNIAFDAPIDVPPSQQIDDAERRLFELAETGRSE 167


>gi|237713053|ref|ZP_04543534.1| DNA primase [Bacteroides sp. D1]
 gi|254882711|ref|ZP_05255421.1| DNA primase [Bacteroides sp. 4_3_47FAA]
 gi|262407357|ref|ZP_06083905.1| DNA primase [Bacteroides sp. 2_1_22]
 gi|229446870|gb|EEO52661.1| DNA primase [Bacteroides sp. D1]
 gi|254835504|gb|EET15813.1| DNA primase [Bacteroides sp. 4_3_47FAA]
 gi|262354165|gb|EEZ03257.1| DNA primase [Bacteroides sp. 2_1_22]
          Length = 318

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 26 DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79
             ++  N      W   P  +E   SF  N  +  +Y F+    G+ ++    
Sbjct: 22 PVKQQGINL-----WYKSPLREETEASFKVNTERNQWYDFALGKGGNIIALAQE 70


>gi|254423630|ref|ZP_05037348.1| replicative DNA helicase [Synechococcus sp. PCC 7335]
 gi|196191119|gb|EDX86083.1| replicative DNA helicase [Synechococcus sp. PCC 7335]
          Length = 453

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 43/156 (27%), Gaps = 8/156 (5%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
              +      +L  +    E A+L  ++  P  +    + L+   +     + ++     
Sbjct: 4   SEPRFKPAADRLPPQNIEAEEAILGGVLIDPEAIGRVTELLSPEAFYIGAHRSIYQAALD 63

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                       +   L ++G       L++    + L               Y Q +  
Sbjct: 64  LQARGLPTDMMGVASWLKDKG------ALEKVGGQSRLAQLVDRTISAANIDQYAQLVMD 117

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILI 618
               R L R   EI +   +     E   + +   +
Sbjct: 118 KYTRRQLIRSGGEIIQLGYETETSLEDVLDLSEQTL 153


>gi|195029593|ref|XP_001987656.1| GH22039 [Drosophila grimshawi]
 gi|193903656|gb|EDW02523.1| GH22039 [Drosophila grimshawi]
          Length = 2021

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D +     AA  A   +   L        +     ED     +       + L       
Sbjct: 1651 DEERKQRTAAVAAKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1710

Query: 382  VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                  +  ++          AE+    ++  +  + ++        + + +     K  
Sbjct: 1711 AAKEELQALSKESERKVKALEAEVLQLSEDLASSERARRAAETERDELAEEINNNANKGS 1770

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                   R   + A   ++    Q   +  L +   S+K  L+   L   L N  +  Q+
Sbjct: 1771 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1827

Query: 501  QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                 A +   N EL+   + +           +         + ++L   G   LL+Q 
Sbjct: 1828 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1887

Query: 554  DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610
              +  D  +   T         V Q  +Q   L  R +LL R  +E E+++  + T K +
Sbjct: 1888 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1947

Query: 611  AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648
             ++    +    E ++ +I+ ++++     G G  S RL
Sbjct: 1948 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 1986


>gi|114578175|ref|XP_001156649.1| PREDICTED: dynactin 1 isoform 14 [Pan troglodytes]
          Length = 1266

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 233 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 292

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 293 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 352

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 353 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 412

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 413 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 472

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 473 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 532

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 533 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 588



 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 217 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 276

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 277 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 336

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 337 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 390

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 391 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 434



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 209 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 268

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 269 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 323


>gi|114578171|ref|XP_001156699.1| PREDICTED: dynactin 1 isoform 15 [Pan troglodytes]
          Length = 1274

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 241 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 300

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 301 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 360

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 361 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 420

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 421 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 480

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 481 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 540

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 541 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 596



 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 225 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 284

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 285 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 344

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 345 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 398

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 399 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 442



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 217 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 276

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 277 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 331


>gi|82237696|sp|Q6PCR7|EIF3A_DANRE RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 subunit 10; AltName:
           Full=eIF-3-theta
 gi|37589184|gb|AAH59196.1| Eukaryotic translation initiation factor 3, subunit 10 (theta)
           [Danio rerio]
          Length = 1267

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 80/239 (33%), Gaps = 25/239 (10%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             + ++  +++R   +       + +               ++ A     K   +   + 
Sbjct: 509 PFLQNMPSEQIRNQLTAMSSSLAKAIQVIKPASILQDHEEQRQQAITAYLKNARKEHQRI 568

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF-VE 528
              +  + ++    E+                 +E  ++     ELQK+          E
Sbjct: 569 LARRQTIEERKERLESL-------------NIQREKEELEQREAELQKVRKAEEERLRQE 615

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            K    E I Q   +     + ++L++  +      A  + +I D+ +       + K+ 
Sbjct: 616 AKEREKERIMQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEE-LDPDFIMAKQV 674

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI----------QIHQIESQEAM 637
             L ++K+E+++++     K +  + A  +  +  +            ++ +++ +E +
Sbjct: 675 EQLEKEKKELQERLKNQEKKIDYFERAKRLEEIPLIKKAYEEQRIKDMELWELQEEERI 733


>gi|31982906|ref|NP_116255.2| cingulin-like protein 1 [Homo sapiens]
 gi|332278171|sp|Q0VF96|CGNL1_HUMAN RecName: Full=Cingulin-like protein 1; AltName:
            Full=Junction-associated coiled-coil protein; AltName:
            Full=Paracingulin
 gi|31074979|gb|AAP42073.1| KIAA1749 protein [Homo sapiens]
          Length = 1302

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 95/290 (32%), Gaps = 10/290 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y +    +L      L +   + E    +     +   L           +D+ 
Sbjct: 972  QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEA 1031

Query: 420  L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L  R    Q ++D   +L  K   +        +   +    +   +    +S +  +  
Sbjct: 1032 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERI 1091

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLP 534
             +   +   L   L+   A  Q+   +   +   N +L+     L   +    E      
Sbjct: 1092 SRSREQMEQLRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQM 1151

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLL 591
            E     L +R   E   + + Q+ +  L     E  +    +      Q   L  R + +
Sbjct: 1152 EARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAM 1211

Query: 592  SRQKEEIEKQIAQVTAKGEA-EKTAILISILHE-VHIQIHQIESQEAMIE 639
             RQ EE E++I ++ +  +  ++       ++E +  Q++ ++    + +
Sbjct: 1212 KRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLRLKK 1261



 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 87/252 (34%), Gaps = 19/252 (7%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           +++++L I +      ++ +       +  R+R++   ++  ++H+          +  +
Sbjct: 614 EQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLE 673

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +     R     L + K+ ++    E   L        + +   +  +  R ++ E   L
Sbjct: 674 ESEGELRKNLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSAKRSEDREKGAL 728

Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLW----SATTEAN 570
              L     + +  L  +  Q    R  ER    L   L  +V              +A 
Sbjct: 729 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 788

Query: 571 IVDVRQGYQQA------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           +  +R+  ++A      LA         +   E+  ++ Q   +    ++  L   + ++
Sbjct: 789 LQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQL 848

Query: 625 HIQIHQIESQEA 636
             QI  ++  EA
Sbjct: 849 QRQIEDLKGDEA 860



 Score = 37.2 bits (84), Expect = 9.0,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 102/331 (30%), Gaps = 13/331 (3%)

Query: 306  QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
            ++R L      +    D           A+   L       +   +     ED     R 
Sbjct: 699  EIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLR-KRE 757

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK--NCINHIKDQKLRYY 423
               TA +  + E +   D    +  E         R  +E   K    +    +   +  
Sbjct: 758  RELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQ 817

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                +R +L Q   + +   S          + + +            +K    +   L 
Sbjct: 818  AGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLE 877

Query: 484  EAAL------LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            EA +         +    A+  E      ++     E ++L   L  +  +++     + 
Sbjct: 878  EALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKN 937

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                     G+ +++L +++ D    S T+   + +    Y++     +    + RQ +E
Sbjct: 938  EMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKE--KNRRELAEMQRQLKE 995

Query: 598  --IEKQIAQVTAKGEAEKTAILISILHEVHI 626
              +E + +++TA    ++  ++   L +   
Sbjct: 996  KTLEAEKSRLTAMKMQDEMRLMEEELRDYQR 1026


>gi|50949611|emb|CAH10575.1| hypothetical protein [Homo sapiens]
          Length = 890

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 203 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 322

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 383 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 442

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 443 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 502

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558



 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 306

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 361 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 404



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 179 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 238

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 239 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 293


>gi|50949613|emb|CAH10572.1| hypothetical protein [Homo sapiens]
          Length = 890

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 203 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 322

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 383 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 442

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 443 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 502

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558



 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 306

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 361 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 404



 Score = 37.9 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 179 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 238

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 239 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 293


>gi|328772569|gb|EGF82607.1| hypothetical protein BATDEDRAFT_86540 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1169

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 102/328 (31%), Gaps = 17/328 (5%)

Query: 315  PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             R+    D             +              +   R +DP+   R + +    K+
Sbjct: 708  QRLQEFEDRQHELDLEQQLQHEFEEKLHQERQAWKELQQQREQDPE---RQHERQQRRKM 764

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
            + E         K   E +     +++ ELE  L+   +  +  +L     +   +  ++
Sbjct: 765  LEERHKQEHHKKKEREEKQRQKELEQQPELEQRLQEFESRQRSIQLEKMLDRDFEENFKK 824

Query: 435  LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL-----LL 489
              +K   +     +   +    R Q+              K  ++   R+  L     L 
Sbjct: 825  QGRKLKQKLEKERQQNPEEQHERQQRRKGSEERHKQEHHKKKEREEKQRQKELEQQPELE 884

Query: 490  TLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              +      Q   Q +++ D  ++    +K    L     +++   PEE H+R   R   
Sbjct: 885  QRLQEFESRQRSIQLEKMLDRDFE-ENFKKQGRKLKQKLEKERQQNPEEQHERQQRRKGS 943

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK-EEIEKQIAQVT 606
            E     +R  ++        E       +   Q L   +R   L +    + E+++ +  
Sbjct: 944  E-----ERHKQEHHKKKEREEKQRQKELEQRLQELEDRQRSMQLEKMLQRDFEEKVERQG 998

Query: 607  AKGEAEKTAILISILHEVHIQIHQIESQ 634
             K + +        L E+  Q  + E Q
Sbjct: 999  RKFKQKLEKERQQELEELEKQRQEKEDQ 1026


>gi|237786615|ref|YP_002907320.1| Replicative DNA helicase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237759527|gb|ACR18777.1| Replicative DNA helicase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 496

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 4/85 (4%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
              +     G+ S +    E A+L  ++     + +  + L    + +   Q +++ +  
Sbjct: 40  PDPRDYEEFGRKSPQDIEAEQAVLGGMLQSQDAITDVVEILRADDFYDPRHQTIFNGILD 99

Query: 525 DFVEQKY----FLPEEIHQRLCERG 545
            + E         P  +  RL   G
Sbjct: 100 LYSESADAQLQIDPVLVSNRLNRDG 124


>gi|1419567|emb|CAA67333.1| dynactin [Homo sapiens]
          Length = 1263

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 225 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 284

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 285 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 344

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 345 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 404

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 405 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 464

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 465 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 524

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 525 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 580



 Score = 40.3 bits (92), Expect = 0.94,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 209 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 268

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 269 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 328

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 329 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 382

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 383 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 426



 Score = 37.9 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 201 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 260

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 261 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 315


>gi|331243494|ref|XP_003334390.1| hypothetical protein PGTG_16259 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309313380|gb|EFP89971.1| hypothetical protein PGTG_16259 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1543

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 89/265 (33%), Gaps = 4/265 (1%)

Query: 373  KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
            + +       +   ++     S    +  + L    +      ++ K R   S    D  
Sbjct: 1155 EKLESEKATQEQEIEQLQNRLSEARDEVESLLSKSQEQQERLQENDKEREALSDDKEDLE 1214

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
             QL    +  H    +  +            + L   +      S K    +  +     
Sbjct: 1215 DQLEAANLKLHETEAQLSQVTEARDSMDAEIRALHTQNKESSASSAKIEQLQETISKLET 1274

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
             +    ++     A++R    EL++    + +              + L    FG+L  +
Sbjct: 1275 ENAEYAEQHSSLTAEVRQLKTELERKAHTIINSEKSYHRVQATLEKRTL---DFGQLEDE 1331

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEA 611
            L+R+  +    + T    + D +   ++ + +    + L    ++++ Q+  Q +A   +
Sbjct: 1332 LERKTNEIMGLNETNNNLLKDTKALRKELIKVKAEAQDLGHHLQDLKDQVDRQASAPNNS 1391

Query: 612  EKTAILISILHEVHIQIHQIESQEA 636
            ++   L + L     ++++++SQ A
Sbjct: 1392 KEMTKLKNELSLCKKELNELKSQRA 1416


>gi|297675867|ref|XP_002815874.1| PREDICTED: centrosomal protein of 120 kDa-like isoform 3 [Pongo
           abelii]
          Length = 960

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 619 PRETLEYKAALELEMWKEIQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 676

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++     S      ++    + ++  + + +Q S+ + K   
Sbjct: 677 AEYTILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDC 736

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   +  L           Q+L D       L+K +         +     +  
Sbjct: 737 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 793

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 794 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 850

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+   +  A  E +        L ++  +++++  QE
Sbjct: 851 LEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 888


>gi|291401345|ref|XP_002717248.1| PREDICTED: centromere protein E [Oryctolagus cuniculus]
          Length = 2697

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 75/218 (34%), Gaps = 18/218 (8%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
              + +       TE S   +   +      +K      ++  L    L  +   RE  L+
Sbjct: 855  AQKFRLNLDTLKTELSHKTQELNQKTTEGQEKLKEMEQLKEQLETRDLRLQTIEREKTLI 914

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFL----------FSDFVEQKYFLPEEIH 538
                     LQ+  +E+  +  + ++L++L   L            D V       E++ 
Sbjct: 915  A------EELQQTLEEVRTLTQEKDDLRQLQESLQTERDQLKSDIQDTVNMNIDTQEQLR 968

Query: 539  QRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK-E 596
              L   + + E +  L  ++ +    +   E N+ +     QQ +    + + L  QK +
Sbjct: 969  NALESLKQYQETITILKMKISEETARNLHVEENMGETEDELQQKMVDIDKNQNLDAQKTK 1028

Query: 597  EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             +   +    A  +  K   LI    E+  ++  I ++
Sbjct: 1029 ALIADVTDDEASEQQRKILSLIQEKKELQQRLENITAE 1066


>gi|210611854|ref|ZP_03289061.1| hypothetical protein CLONEX_01260 [Clostridium nexile DSM 1787]
 gi|210151838|gb|EEA82845.1| hypothetical protein CLONEX_01260 [Clostridium nexile DSM 1787]
          Length = 452

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 16/113 (14%)

Query: 3   YPRDFIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
                I+++  +I I ++  Q  Y    R   +    +       H+    S   +  + 
Sbjct: 49  INTQIIQEIESNIKIVDVANQMGY-TLKREGRHYTIKE-------HE----SVRIDVDRN 96

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI 113
            +  +S   +G  + F+S        E +  LA+   +        I++KEK 
Sbjct: 97  LFIRYSNGHRGSVIDFISEFKNQPKNEVINELASE--INFNYNSHGIKRKEKK 147


>gi|89901605|ref|YP_524076.1| hypothetical protein Rfer_2833 [Rhodoferax ferrireducens T118]
 gi|89346342|gb|ABD70545.1| hypothetical protein Rfer_2833 [Rhodoferax ferrireducens T118]
          Length = 154

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 11 LLIHIP--ISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS-C 67
          L  ++P  IS    + +    R            C FH     S   N   G + C + C
Sbjct: 5  LRENLPDPISYFESEGLKLQGRGIWRTTA-----CSFHGGSD-SMRVNTHTGAFVCMAAC 58

Query: 68 HV-KGDHLSFLSALLGCSFIESVQRLAAI 95
              GD L++  A  G  F+ +   L A+
Sbjct: 59 GARGGDVLAYHMATHGLDFVTAASALGAM 87


>gi|47205442|emb|CAG05719.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1398

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 87/271 (32%), Gaps = 22/271 (8%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           +     +     E E        ++ ELE  L      + D++ R       + ++QQ  
Sbjct: 254 QEQLQAETELFAEAEEMRVRLAAKKQELEEILHEMEARLDDEEERAQALLLDKKKMQQQM 313

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           Q+            +K    +       + ++  ++  +      L+E  L+        
Sbjct: 314 QELEEHLEEEEDARQKLQLEKVTCEGKIKKLEDEILVMEDHNNKLLKERKLME------D 367

Query: 497 ILQEQYQELADIRYDNNELQKLWSF-----------LFSDFVEQKYFLPEEIHQRLCERG 545
            + +    LA+    +  L KL +            L  +   ++     +         
Sbjct: 368 RIADISTNLAEEEEKSKNLTKLKNKHESMISELEVRLKKEEKCRQELDKAKRKLEAESND 427

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             E +  L  Q+ +     A  E  + +     +  +A   +     ++  E+E  I+ +
Sbjct: 428 LQEQIADLQAQIAELKAQLAKKEEELQNALARLEDEMA---QKNNALKKIRELEGHISDL 484

Query: 606 TAKGEAEKTAILISI--LHEVHIQIHQIESQ 634
               ++E+ A   +     ++  ++  ++S+
Sbjct: 485 QEDLDSERAARNKAEKIKRDLGEELEALKSE 515


>gi|47230389|emb|CAF99582.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1905

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 71/228 (31%), Gaps = 26/228 (11%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +  R  Y   IRD LQ    +   E     +      R          L   S+    + 
Sbjct: 1262 KIEREQYQTEIRD-LQDQLSEMHDELDTAKKSVADGERTAMMAVTPSPLFDFSVWADMMH 1320

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             K  L+E  L               ++   ++    EL  L   L  +         +++
Sbjct: 1321 LKLELQEILLAK------------EEQEDVLKRRERELTALKGALKEEVAAH-DQEVDKL 1367

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKE 596
             ++  +      L   + +   A +     +A +   +   + QA  L      L R+ +
Sbjct: 1368 KEQYEKEIGRLQLSLEEAKQSSAAV--VREKAEVEAAKGAVEGQAGRLTLETERLRRRAQ 1425

Query: 597  EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQE 635
            E+E ++A++    +  K            L     ++   + +I  QE
Sbjct: 1426 ELENEVAKLNRIIDEAKLQESRLGDRVGRLEKEKKQLEESLAEIREQE 1473



 Score = 44.9 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 21/156 (13%)

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE------- 543
            L+   A  Q+   +   +   N +L+   S L       K  L  ++  R+ E       
Sbjct: 1705 LLQERAGRQDLECDKIALERQNKDLKSRLSHLEGSQKSNKENLVSQLEARIQELEERLEG 1764

Query: 544  -----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                        ++L+R+V++  +       +++D +        L  R + L RQ +E 
Sbjct: 1765 EERERANLQLANRRLERKVKEMVMQGEEEHNSLLDQKDQ------LNLRLKALKRQMDEA 1818

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIES 633
            E++I ++      +K    +    EV+ Q+ +Q++ 
Sbjct: 1819 EEEIDRLEHA--KKKLQRELDEQQEVNDQLQNQLKG 1852



 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 63/175 (36%), Gaps = 4/175 (2%)

Query: 469  SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
             +  K   +++  L E  +    +N     Q   Q +  I     +++++ + L  +   
Sbjct: 1652 KAGAKDDRARQIKLMEDRIAQLELNLEEERQSGDQLMDRIDRGREQVEQMRNELLQERAG 1711

Query: 529  QKYFLPEEIHQRLCERGFGELLKQLD-RQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
            ++    ++I      +     L  L+  Q  +     +  EA I ++ +  +        
Sbjct: 1712 RQDLECDKIALERQNKDLKSRLSHLEGSQKSNKENLVSQLEARIQELEERLEGEERERAN 1771

Query: 588  FRLLSRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             +L +R+ E   K++    +       ++   L   L  +  Q+ + E +   +E
Sbjct: 1772 LQLANRRLERKVKEMVMQGEEEHNSLLDQKDQLNLRLKALKRQMDEAEEEIDRLE 1826


>gi|332239086|ref|XP_003268736.1| PREDICTED: dynactin subunit 1 [Nomascus leucogenys]
          Length = 1278

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 419

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 479

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595



 Score = 40.3 bits (92), Expect = 0.97,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330


>gi|320040240|gb|EFW22173.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 1259

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 70/232 (30%), Gaps = 18/232 (7%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            +R    Q I +  + +  +  +      R     +     +    +     + K     
Sbjct: 583 LVRSSLEQQIANLQRTMQDEKASHLQELKRREMLKSDALAAQKEELQGHLQEMKKKDDQA 642

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                 A           +  E  Q++A +    +++   +         +      E+ 
Sbjct: 643 AAEKLRAREEELYGERDQLKAEWEQQMAALNKSKDDMAAEYEGKLDTKKTELETKQGELD 702

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----RFRLLSRQ 594
            +  +        +LD +  +     +  EA   ++    ++          +   ++R 
Sbjct: 703 AK--QAELQAKQSELDARQEELNATKSDLEAKQAELVDRQKELEEKQSEVEAKQEEINRL 760

Query: 595 KEEIEKQIAQVTA------------KGEAEKTAILISILHEVHIQIHQIESQ 634
           K E+E +IA++              + +  +   +   L EV  ++ + +SQ
Sbjct: 761 KSELESKIAELEDKRRELEQKQGELESKQTELQAIQDELQEVKAELEEKKSQ 812



 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 94/267 (35%), Gaps = 18/267 (6%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            E +  +      R+ LE  + N    ++D+  +  + Q ++ R          +     
Sbjct: 572 EELKKANDELTLVRSSLEQQIANLQRTMQDE--KASHLQELKRREMLKSDALAAQKEELQ 629

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA- 506
            + ++  +  DQ    +   +   + G+  +  +  E  +     +   +  E   +L  
Sbjct: 630 GHLQEMKKKDDQAAAEKLRAREEELYGERDQLKAEWEQQMAALNKSKDDMAAEYEGKLDT 689

Query: 507 ----------DIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRL--CERGFGELLKQ 552
                     ++     ELQ   S L +   E        E     L   ++   E   +
Sbjct: 690 KKTELETKQGELDAKQAELQAKQSELDARQEELNATKSDLEAKQAELVDRQKELEEKQSE 749

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           ++ +  +     +  E+ I ++    ++             + + I+ ++ +V A+ E E
Sbjct: 750 VEAKQEEINRLKSELESKIAELEDKRRELEQKQGELESKQTELQAIQDELQEVKAELE-E 808

Query: 613 KTAILISILHEVHIQIHQIESQEAMIE 639
           K + L S   ++  +  ++ +++A ++
Sbjct: 809 KKSQLESKQADLDKKQEELTAKQAELD 835



 Score = 37.9 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 67/216 (31%), Gaps = 12/216 (5%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKN-ARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           QA  ++L+   ++   E       W++  A     K       +  L   K   +    E
Sbjct: 641 QAAAEKLRAREEELYGERDQLKAEWEQQMAALNKSKDDMAAEYEGKLDTKKTELETKQGE 700

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                  +       E      ++    ++L+   + L     E +    E       + 
Sbjct: 701 LDAKQAELQAKQ--SELDARQEELNATKSDLEAKQAELVDRQKELEEKQSEV---EAKQE 755

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-- 602
               L  +L+ ++ +        E    ++     +  A+    + +  + EE + Q+  
Sbjct: 756 EINRLKSELESKIAELEDKRRELEQKQGELESKQTELQAIQDELQEVKAELEEKKSQLES 815

Query: 603 AQVTAKGEAEKTAILISILHEVH----IQIHQIESQ 634
            Q     + E+     + L +V      ++  + +Q
Sbjct: 816 KQADLDKKQEELTAKQAELDDVKEKHAAELAALRAQ 851


>gi|301783281|ref|XP_002927054.1| PREDICTED: myosin-11-like isoform 2 [Ailuropoda melanoleuca]
          Length = 1972

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 877  ELEQKHSQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 936

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 937  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 996

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 997  LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1056

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1057 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALSRLDDEIA---QKNNALKKI 1113

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1114 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1154


>gi|301783279|ref|XP_002927053.1| PREDICTED: myosin-11-like isoform 1 [Ailuropoda melanoleuca]
          Length = 1979

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 884  ELEQKHSQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 943

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 944  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1003

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1004 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1063

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1064 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALSRLDDEIA---QKNNALKKI 1120

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1121 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1161


>gi|195489897|ref|XP_002092933.1| GE11388 [Drosophila yakuba]
 gi|194179034|gb|EDW92645.1| GE11388 [Drosophila yakuba]
          Length = 2011

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D +     AA  +   +   L        +     ED     +       + L       
Sbjct: 1644 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1703

Query: 382  VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                  +  ++          AE+    ++  +  + ++        + + +     K  
Sbjct: 1704 AAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1763

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                   R   + A   ++    Q   +  L +   S+K  L+   L   L N  +  Q+
Sbjct: 1764 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1820

Query: 501  QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                 A +   N EL+   + +           +         + ++L   G   LL+Q 
Sbjct: 1821 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1880

Query: 554  DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610
              +  D  +   T         V Q  +Q   L  R +LL R  +E E+++  + T K +
Sbjct: 1881 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1940

Query: 611  AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648
             ++    +    E ++ +I+ ++++     G G  S RL
Sbjct: 1941 YQRECEDMIESQEAMNREINSLKTKLRRTGGMGLSSSRL 1979


>gi|182625417|ref|ZP_02953190.1| replicative DNA helicase [Clostridium perfringens D str. JGS1721]
 gi|177909414|gb|EDT71866.1| replicative DNA helicase [Clostridium perfringens D str. JGS1721]
          Length = 433

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 53/140 (37%), Gaps = 6/140 (4%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A+L T+  +   + +   EL D  + N++ + ++  + + +     F    + ++L  
Sbjct: 12  EEAILGTITANNKYMLKVIGELDDNDFYNSKNKMIYRAMCNLYKNSISFDVVVLSEKLSN 71

Query: 544 R--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR----FRLLSRQKEE 597
                   L  +  +  +    + ++   IV  +   ++ +   +R       ++ +   
Sbjct: 72  EVKNGAITLTDIAEKTSNIDYGTLSSHVKIVKEKSRERKLVNACQRVISSEGNVNSKINY 131

Query: 598 IEKQIAQVTAKGEAEKTAIL 617
           ++ ++ +V      +    +
Sbjct: 132 LQNELLEVNQVNRKDSIKNM 151


>gi|146075814|ref|XP_001462780.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134066860|emb|CAM60001.1| hypothetical protein LINJ_03_0260 [Leishmania infantum JPCM5]
          Length = 2143

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 14/285 (4%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     A    +               E           +             D+     
Sbjct: 565 QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEARE 624

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              A  + LQQ       + +       + A  RD+           L +  ++      
Sbjct: 625 QLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRA 684

Query: 484 E--AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           E  A +     +     ++     +EL        + +       +     +    E++ 
Sbjct: 685 ELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLA 744

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597
                    + L    +Q  +     A   A+  + R+     A  L +R    ++Q+ E
Sbjct: 745 A--NAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAE 802

Query: 598 IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
           +E Q+A++ A  +  +         L   L     Q  ++E+Q A
Sbjct: 803 LEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 847



 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 14/285 (4%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +     A    +               E           +             D+     
Sbjct: 1072 QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEARE 1131

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               A  + LQQ       + +       + A  RD+           L +  ++      
Sbjct: 1132 QLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRA 1191

Query: 484  E--AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            E  A +     +     ++     +EL        + +       +     +    E++ 
Sbjct: 1192 ELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLA 1251

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597
                     + L    +Q  +     A   A+  + R+     A  L +R    ++Q+ E
Sbjct: 1252 A--NAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLATAAQQRAE 1309

Query: 598  IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
            +E Q+A++ A  +  +         L   L     Q  ++E+Q A
Sbjct: 1310 LEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 1354



 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 79/285 (27%), Gaps = 14/285 (4%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     A    +               E           +             D+     
Sbjct: 448 QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEARE 507

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              A  + LQQ       + +       + A  RD+           L +  ++      
Sbjct: 508 QLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRA 567

Query: 484 E--AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIH 538
           E  A +     +     ++      +++       +  + L    +     +    E++ 
Sbjct: 568 ELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLA 627

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597
                    + L    +Q  +     A   A+  + R+     A  L +R    ++Q+ E
Sbjct: 628 A--NAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAE 685

Query: 598 IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
           +E Q+A++ A  +  +         L   L     Q  ++E+Q A
Sbjct: 686 LEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 730



 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 14/285 (4%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     A    +               E           +             D+     
Sbjct: 214 QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEARE 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              A  + LQQ       + +       + A  RD+           L +  ++      
Sbjct: 274 QLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRA 333

Query: 484 E--AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           E  A +     +     ++     +EL        + +       +     +    E++ 
Sbjct: 334 ELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLA 393

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597
                    + L    +Q  +     A   A+  + R+     A  L +R    ++Q+ E
Sbjct: 394 A--NAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAE 451

Query: 598 IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
           +E Q+A++ A  +  +         L   L     Q  ++E+Q A
Sbjct: 452 LEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 496



 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 75/222 (33%), Gaps = 14/222 (6%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            ++ ++ RL    Q+     +   R        R+Q   +   +Q  LV     +     E
Sbjct: 786  AEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAE--LE 843

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIHQRL 541
            A +     +     ++      +++       +  + L    +     +    E++    
Sbjct: 844  AQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAA-- 901

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEK 600
                  + L    +Q  +     A   A+  + R+     A  L +R    ++Q+ E+E 
Sbjct: 902  NAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEA 961

Query: 601  QIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
            Q+A++ A  +  +         L   L     Q  ++E+Q A
Sbjct: 962  QVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 1003



 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 14/285 (4%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +     A    +               E           +             D+     
Sbjct: 838  QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEARE 897

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               A  + LQQ       + +       + A  RD+           L +  ++      
Sbjct: 898  QLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRA 957

Query: 484  E--AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            E  A +     +     ++     +EL        + +       +     +    E++ 
Sbjct: 958  ELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLA 1017

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597
                     + L    +Q  +     A   A+  + R+     A  L +R    ++Q+ E
Sbjct: 1018 A--NAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAE 1075

Query: 598  IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
            +E Q+A++ A  +  +         L   L     Q  ++E+Q A
Sbjct: 1076 LEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 1120



 Score = 44.9 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 14/285 (4%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     A    +               E           +             D+     
Sbjct: 682 QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEARE 741

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              A  + LQQ       + +       + A  RD+           L +  ++      
Sbjct: 742 QLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRA 801

Query: 484 E--AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           E  A +     +     ++     +EL        + +       +     +    E++ 
Sbjct: 802 ELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLA 861

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597
                    + L    +Q  +     A   A+  + R+     A  L +R    ++Q+ E
Sbjct: 862 A--NAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAE 919

Query: 598 IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
           +E Q+A++ A  +  +         L   L     Q  ++E+Q A
Sbjct: 920 LEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 964



 Score = 44.5 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 79/285 (27%), Gaps = 14/285 (4%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     A    +               E           +             D+     
Sbjct: 526 QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEARE 585

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              A  + LQQ       + +       + A  RD+           L +  ++      
Sbjct: 586 QLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRA 645

Query: 484 E--AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIH 538
           E  A +     +     ++      +++       +  + L    +     +    E++ 
Sbjct: 646 ELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLA 705

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597
                    + L    +Q  +     A   A+  + R+     A  L +R    ++Q+ E
Sbjct: 706 A--NAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAE 763

Query: 598 IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
           +E Q+A++ A  +  +         L   L     Q  ++E+Q A
Sbjct: 764 LEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 808



 Score = 44.5 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 14/285 (4%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +     A    +               E           +             D+     
Sbjct: 799  QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEARE 858

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               A  + LQQ       + +       + A  RD+           L +  ++      
Sbjct: 859  QLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRA 918

Query: 484  E--AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            E  A +     +     ++     +EL        + +       +     +    E++ 
Sbjct: 919  ELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLA 978

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597
                     + L    +Q  +     A   A+  + R+     A  L +R    ++Q+ E
Sbjct: 979  A--NAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAE 1036

Query: 598  IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
            +E Q+A++ A  +  +         L   L     Q  ++E+Q A
Sbjct: 1037 LEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 1081



 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 75/222 (33%), Gaps = 14/222 (6%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            ++ ++ RL    Q+     +   R        R+Q   +   +Q  LV     +     E
Sbjct: 1215 AEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAE--LE 1272

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIHQRL 541
            A +     +     ++      +++       +  + L    +     +    E++    
Sbjct: 1273 AQVARLAADRDEAREQLAANAEELQQRLATAAQQRAELEAQVARLAADRDEAREQLAA-- 1330

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEK 600
                  + L    +Q  +     A   A+  + R+     A  L +R    ++Q+ E+E 
Sbjct: 1331 NAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLATAAQQRAELEA 1390

Query: 601  QIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
            Q+A++ A  +  +         L   L     Q  ++E+Q A
Sbjct: 1391 QVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVA 1432



 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 74/222 (33%), Gaps = 14/222 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           ++ ++ RL    Q+     +   R        R+Q   +   +Q  LV     +     E
Sbjct: 357 AEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAE--LE 414

Query: 485 AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           A +     +     ++     +EL        + +       +     +    E++    
Sbjct: 415 AQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAA-- 472

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEK 600
                 + L    +Q  +     A   A+  + R+     A  L +R    ++Q+ E+E 
Sbjct: 473 NAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEA 532

Query: 601 QIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
           Q+A++ A  +  +         L   L     Q  ++E+Q A
Sbjct: 533 QVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 574



 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 75/222 (33%), Gaps = 14/222 (6%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            ++ ++ RL    Q+     +   R        R+Q   +   +Q  LV     +     E
Sbjct: 942  AEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAE--LE 999

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIHQRL 541
            A +     +     ++      +++       +  + L    +     +    E++    
Sbjct: 1000 AQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAA-- 1057

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEK 600
                  + L    +Q  +     A   A+  + R+     A  L +R    ++Q+ E+E 
Sbjct: 1058 NAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEA 1117

Query: 601  QIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
            Q+A++ A  +  +         L   L     Q  ++E+Q A
Sbjct: 1118 QVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVA 1159



 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 14/285 (4%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +     A    +               E           +             D+     
Sbjct: 916  QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEARE 975

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               A  + LQQ       + +       + A  RD+           L +  ++      
Sbjct: 976  QLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRA 1035

Query: 484  E--AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            E  A +     +     ++     +EL        + +       +     +    E++ 
Sbjct: 1036 ELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLA 1095

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597
                     + L    +Q  +     A   A+  + R+     A  L +R    ++Q+ E
Sbjct: 1096 A--NAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAE 1153

Query: 598  IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
            +E Q+A++ A  +  +         L   L     Q  ++E+Q A
Sbjct: 1154 LEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVA 1198



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 73/226 (32%), Gaps = 14/226 (6%)

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
           +  + + + LQQ         +          R  +++  + +     L +  ++     
Sbjct: 156 HALRGVIETLQQALNDAQCNAAKAATSAAAQLRTAEEENAALKSTADLLQQRLVTAAQQR 215

Query: 483 RE--AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            E  A +     +     ++     +EL        + +       +     +    E++
Sbjct: 216 AELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQL 275

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKE 596
                     + L    +Q  +     A   A+  + R+     A  L +R    ++Q+ 
Sbjct: 276 AA--NAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRA 333

Query: 597 EIEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636
           E+E Q+A++ A  +  +         L   L     Q  ++E+Q A
Sbjct: 334 ELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 379


>gi|319939342|ref|ZP_08013702.1| ABC transporter [Streptococcus anginosus 1_2_62CV]
 gi|319811328|gb|EFW07623.1| ABC transporter [Streptococcus anginosus 1_2_62CV]
          Length = 632

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 15/156 (9%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSDTGSTLYLGDYDYYLEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++   +   A      +  N    ++  ++A  L +R   L  + EE+E Q  
Sbjct: 532 KAELEALRE--EKATAAEPTQPQSVTNYQLQKETQKEARKLARRLEQLEAEIEELEMQTT 589

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAMI 638
           ++T   +    A     L E+  ++ Q+ E QEA +
Sbjct: 590 ELTTAMQETNDAS---ELMELQQKLDQLTERQEAAM 622


>gi|301615183|ref|XP_002937063.1| PREDICTED: myosin-10 [Xenopus (Silurana) tropicalis]
          Length = 1971

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 95/265 (35%), Gaps = 22/265 (8%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            +     E E        ++ ELE  L++    +++++ R    Q  + ++Q   Q    +
Sbjct: 900  ETELFAEAEEMRARLAIKKQELEEILRDLEIRMEEEEERNQVLQNEKKKMQAHVQDLEEQ 959

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                    +K    +       + M+  ++  +      L+E  LL         + E  
Sbjct: 960  LDEEEAARQKLQLEKVTAEAKIKKMEEDILVLEDQNSKFLKEKKLLE------ERIAEST 1013

Query: 503  QELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEIHQRLCER---------GFGELLK 551
             +LA+       L KL     +    +E++    E+  Q L +             + + 
Sbjct: 1014 SQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIA 1073

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            +L  Q+ +  L  A  E    +++    +      +     +   E++ QIA++    E+
Sbjct: 1074 ELQAQIEELKLQLAKKE---EELQAALARGDEEVLQKNNTLKVVRELQAQIAELQEDLES 1130

Query: 612  EKTAILISILH--EVHIQIHQIESQ 634
            EK +   +     ++  ++  ++++
Sbjct: 1131 EKASRNKAEKQKRDLSEELEALKTE 1155



 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/260 (11%), Positives = 89/260 (34%), Gaps = 23/260 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L   +++    ++++ + +   +  ++RLQQ     + +           +K  
Sbjct: 1392 EEVKKKLLKDMESLGQRLEEKGIAHEKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ 1451

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L         
Sbjct: 1452 KKFDQLLAEEKNISARNAEERDRAEADAREKETKAL-----SLARALDEALEGRDEFERL 1506

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1507 NKQLRAEMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQGTEDAKLRL 1566

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1567 EVNMQAMKAQFERDLQTRDEQNEEKKRALVKQVRELEAELEDERKQRAMAVAIKKKLEMD 1626

Query: 621  LHEVHIQIHQI-ESQEAMIE 639
            + ++  QI    + +E  I+
Sbjct: 1627 MKDLESQIEAANKGREDAIK 1646


>gi|302559501|ref|ZP_07311843.1| ATP-dependent chaperone ClpB [Streptomyces griseoflavus Tu4000]
 gi|302477119|gb|EFL40212.1| ATP-dependent chaperone ClpB [Streptomyces griseoflavus Tu4000]
          Length = 865

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 73/244 (29%), Gaps = 41/244 (16%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGY-----------GRYWKKNARHRDQKGPSQRLMQSSLV 472
           Y     +RL+ +  +                   G     ++           L +  L 
Sbjct: 252 YRGEFEERLKTVLAEIKESDGQVVTFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELR 311

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
               +     RE      +   PA+ + ++Q++        +   +   L   +      
Sbjct: 312 MVGATTLDEYRER-----IEKDPAL-ERRFQQVLVAEPTVEDSIAILRGLKGRYEAHHKV 365

Query: 533 LPEE----IHQRLCERGF------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
              +        L +R         + +  +D       +   ++   I ++++   +  
Sbjct: 366 QIADSALVAAATLSDRYITSRFLPDKAIDLVDEAASRLRMEIDSSPVEIDELQRAVDRLR 425

Query: 583 ------------ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
                       A  +R   L R   + E+++  + A+ + EK    ++ + E+  ++ +
Sbjct: 426 MEELAIGKETDAASRERLDKLRRDLADKEEELRGLNARWDKEK--QSLNRVGELKEKLDE 483

Query: 631 IESQ 634
           +  Q
Sbjct: 484 LRGQ 487


>gi|302879165|ref|YP_003847729.1| replicative DNA helicase [Gallionella capsiferriformans ES-2]
 gi|302581954|gb|ADL55965.1| replicative DNA helicase [Gallionella capsiferriformans ES-2]
          Length = 465

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 10/129 (7%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           KL       E ++L  L+   + L +    L +  +   E + ++  +     + K    
Sbjct: 15  KLPPHSVEAEQSVLGGLMLESSALDKITDILGEDDFYRREHRLIYRHIVRMSEQAKPVDV 74

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L          +LD+    + L S           + Y + +    R R + R+
Sbjct: 75  ITVAEALENS------DELDKAGGLSYLGSLVQNVPSAANIRRYGEIV----RERSVMRR 124

Query: 595 KEEIEKQIA 603
             E+   IA
Sbjct: 125 LAEVGSDIA 133


>gi|160875208|ref|YP_001554524.1| exodeoxyribonuclease V subunit gamma [Shewanella baltica OS195]
 gi|160860730|gb|ABX49264.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS195]
 gi|315267401|gb|ADT94254.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS678]
          Length = 1270

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 69/523 (13%), Positives = 149/523 (28%), Gaps = 30/523 (5%)

Query: 138 KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG--LLIDGDNS 195
                +L+   + +  I++++L       +      R       +  E    L    +  
Sbjct: 129 ADTCEHLNTSDMTADDIKLYQLCGRIADIFDQYLVYRPDWILAWEQNEHPDSLTKSLNED 188

Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255
                     LI   R    Q      R     + +  LN+P+T L    + L+ F  + 
Sbjct: 189 QRWQPILWRALIAFNRDELNQSHYH--RANLHSDLIAALNNPDTSLAQLPQRLFVFGISS 246

Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315
              Q              I+L               +N          + QL  LW+   
Sbjct: 247 MAPQTLEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQYAGKRQLAELWEEKL 306

Query: 316 RI--VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
            +   L  +    G       ++L   H   G+ V         DP S         ++ 
Sbjct: 307 EVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNDPHSHASMLHGVQYDI 366

Query: 374 LIVESLPL---VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
           L +++L      D    +  ENR     D+++       + +  +  + L  +  + + +
Sbjct: 367 LEMQTLDRVLGPDAELYQNVENRRLFKRDDQSIRVKSCHSPLREV--ETLHDHLLELLSN 424

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
                 +  +        Y          K     +  +   +G   + P +     LL 
Sbjct: 425 HADLTPKDIVVMMPDVAAYAPYIDAVFSAKQGLHYIPYAIADRGAAQESPLINSFLNLLG 484

Query: 491 L------INHPAILQEQYQELADIRYDNNELQKLWSFL----FSDFVEQKYFLPEEIHQR 540
           +      +     + E    L   + D++ELQ +  +L          ++  L + +   
Sbjct: 485 INQSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRNEQSRLKQGVPAF 544

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                   + + +                 +  +     QAL     F  +  +  +I  
Sbjct: 545 EQNSWAFGIKRLILGYALSDDAPLYQDHLIVTGIEGQSAQALGKLLNFIEVLDETAQILA 604

Query: 601 -------QIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQ 634
                  ++A++T   +A  +        L E+   I  +E +
Sbjct: 605 LPQVDALRLAELTELLDAFYDTDEDEREQLQEIRDAIAALEQE 647


>gi|109103429|ref|XP_001108541.1| PREDICTED: dynactin subunit 1-like isoform 10 [Macaca mulatta]
          Length = 1253

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575



 Score = 40.3 bits (92), Expect = 0.97,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310


>gi|117923895|ref|YP_864512.1| lipopolysaccharide biosynthesis [Magnetococcus sp. MC-1]
 gi|117607651|gb|ABK43106.1| lipopolysaccharide biosynthesis [Magnetococcus sp. MC-1]
          Length = 537

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 72/264 (27%), Gaps = 25/264 (9%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
            T     + P+   ++       +     + ++    Q    R     Q    E      
Sbjct: 138 YTLTHHHSDPEVAKQVVEGFLTILMEHSVEGVKNR-RQEKAQRF-LSEQVQKFEDKFAKS 195

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
                   R          Q    +    K+ +  E   L  L      L EQ  +    
Sbjct: 196 DLAWQEFKRSNPLIRPDQGQGYYARLADFKQRAEDERLKLSALSKERDALAEQLAQRQRA 255

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
              +  LQ     + +   E+     E++ +R+        L+ L+      G      +
Sbjct: 256 TLASTPLQAPR-AVVAPLNEEIDRNLEQLEERI--------LEMLETHYVVGGEKRYLYD 306

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI---------- 618
               ++R    Q L L +R      + + + +   Q     +      ++          
Sbjct: 307 EAHPEIRSLRNQILELQRRKEEEMARLKSLSEMPQQAFNDEKDPVAQQILLDLRKVEVDL 366

Query: 619 ----SILHEVHIQIHQIESQEAMI 638
                 L E + Q+  +  +EA +
Sbjct: 367 ASAQGRLQEYNAQLADLRRREATV 390


>gi|324501460|gb|ADY40651.1| RB1-inducible coiled-coil protein 1 [Ascaris suum]
          Length = 1165

 Score = 45.3 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 27/288 (9%), Positives = 81/288 (28%), Gaps = 13/288 (4%)

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380
           FD D    +  +      L  ++ G     + ++  ++  S  +   +   +  +  +  
Sbjct: 677 FDMDRRSNQMTFSDAMEHLKPILSGLHSVLLEMNETKEMISTHKDNVEEEVKAALNCAER 736

Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
           ++D   +   E+      + R  ++         I ++          RDR  +  ++ +
Sbjct: 737 IIDECDRLRRESTKKEVEEARNHVKEECVAHYESIVNKLKTELEEGTKRDRELEDLREVL 796

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
            E        +      +         ++ L K    +     E         H   ++ 
Sbjct: 797 EEQQAEINALRVYKESTENAIAKLESEKAELFKTFTIEHEVEVER----MASLHSDEMKR 852

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           + +E+  ++        L           +   PE+   R          ++  +     
Sbjct: 853 KEKEIDSLK------AALHKA-RETRTHAQATEPEDSASR--NEEIRATFEKEYKSRMQF 903

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            +     +      R   +    L  + +    +  E+E+ + +    
Sbjct: 904 LVKGLEEKKADEIARIKKEAEFDLRMKSKEYEEKIRELEQLLQREENA 951


>gi|171915001|ref|ZP_02930471.1| primary replicative DNA helicase [Verrucomicrobium spinosum DSM
           4136]
          Length = 441

 Score = 45.3 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 12/161 (7%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  +I    +  E   EL D  + +   + ++  + +   E++      +     
Sbjct: 14  AERGVLSCMICRHDVALEAQLELKDEHFYHPANRLIFQTIKTMVAEERPTELPAMSVFFM 73

Query: 543 ERGFGELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
           + G   L+ ++      A L++     A+    R   +Q L L K     +   + +++ 
Sbjct: 74  DMG---LMDKIGGPATLAELYAFVPTPAHYDYYRDILKQKLKLRKVIEACTEVLQSVQE- 129

Query: 602 IAQVTAKGEAE-KTAILISILHEVHIQIHQIESQ--EAMIE 639
                  G+A+          +E+  Q    +    E ++E
Sbjct: 130 ----VGHGDADVLVDAAGERFYEIAAQEQTCQGTFKEKLME 166


>gi|1546825|gb|AAB08430.1| mCASP [Mus musculus]
          Length = 676

 Score = 45.3 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 97/282 (34%), Gaps = 16/282 (5%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + E + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 101 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q   ++        ++  ++   +   +          KL +     +           
Sbjct: 161 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRT 220

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 221 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 280

Query: 554 DRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQI 602
            ++               +  A  E  I  + +  Q+  A   + R  S  Q  ++E+Q+
Sbjct: 281 IQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQL 340

Query: 603 AQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
               +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 341 NAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 382


>gi|302038730|ref|YP_003799052.1| replicative DNA helicase [Candidatus Nitrospira defluvii]
 gi|300606794|emb|CBK43127.1| Replicative DNA helicase [Candidatus Nitrospira defluvii]
          Length = 451

 Score = 45.3 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 6/118 (5%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           + L    L   KL  +    E ++L  ++     + +  + L D  +     +K++  + 
Sbjct: 2   KSLSAVDLTSPKLPPQNVEAEQSVLGAILLDNTAMAKVMELLTDEEFYRTAHRKIYQAML 61

Query: 524 SDFVEQKYFLPEEIHQ------RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
                 +      + +       L   G    L +L + V  A      ++       
Sbjct: 62  ELSDRGEVIDQITLTECLKARSELEAVGGSAYLAELVQVVPTAANIRYHSKIVRDKAL 119


>gi|251777825|ref|ZP_04820745.1| gp49 [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082140|gb|EES48030.1| gp49 [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 655

 Score = 45.3 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 108/291 (37%), Gaps = 18/291 (6%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-QKLRY 422
           +   +    KL  E         K   +    +  +   ++  + ++    I+D ++ + 
Sbjct: 260 KLKLQDELYKLNEERSKKQREALKSANKPLD-DIQNNINQVRNNAQDLAYKIQDSERDKE 318

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK---------GPSQRLMQSSLVK 473
              + I D  + L  + + +     +Y  ++ +              G    L +   +K
Sbjct: 319 RNLKYIEDMKKDLENRKLKKQELLNKYHIEDDKEFKFDSSLSSCPHCGREYNLDKIEEIK 378

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELAD-IRYDNNELQKLWSFLFSDFVEQKYF 532
                K + +++ ++  +I     +    + L   I+    EL+++ S +     E + F
Sbjct: 379 NNAEIKFNEQKSKIISKIIADGKTIANDIKSLEAKIQSSEKELEEIKSKIVDL--EGRKF 436

Query: 533 LPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
           + ++  + L ++    + ++ +     +  +     +A I D +      L   KR   L
Sbjct: 437 VLDQNLEELEDQKQKIDCVEPIVEGEDELQIKIDGLQAQINDFKSADNSLLKNEKR--TL 494

Query: 592 SRQKEEIEKQIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQEAMIEGF 641
             + E+I K + +     E  ++   L     E+ I+I ++E Q+ + E F
Sbjct: 495 QEELEDITKTLGKKDTNAELKKRMEELNQEEKELQIKIAELEGQQYLGEEF 545


>gi|170084169|ref|XP_001873308.1| dynein heavy chain protein 1 [Laccaria bicolor S238N-H82]
 gi|164650860|gb|EDR15100.1| dynein heavy chain protein 1 [Laccaria bicolor S238N-H82]
          Length = 3456

 Score = 45.3 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 57/135 (42%), Gaps = 8/135 (5%)

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
             +  Q + +        ++L   +  DF+ +  +  E + +    +  G L+K    QVR
Sbjct: 2173 DDFIQRIVNFDTTTQMTRQLRDTMKKDFLSRPSYNFETVQRA--SKACGPLVKWALAQVR 2230

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
             + +     E    +V+    QA    K+   +     E+E +IA+       ++ A+LI
Sbjct: 2231 FSEILD-KVEPLRNEVQSLEIQAETTKKQASAIIHMIAELESKIARY-----KDEYALLI 2284

Query: 619  SILHEVHIQIHQIES 633
            S    + +++ +++S
Sbjct: 2285 SETQAIKLEMERVQS 2299


>gi|111600321|gb|AAI18919.1| Cingulin-like 1 [Homo sapiens]
 gi|119597927|gb|EAW77521.1| cingulin-like 1 [Homo sapiens]
          Length = 1302

 Score = 45.3 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 95/290 (32%), Gaps = 10/290 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y +    +L      L +   + E    +     +   L           +D+ 
Sbjct: 972  QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEA 1031

Query: 420  L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L  R    Q ++D   +L  K   +        +   +    +   +    +S +  +  
Sbjct: 1032 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERI 1091

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLP 534
             +   +   L   L+   A  Q+   +   +   N +L+     L   +    E      
Sbjct: 1092 SRSREQMEQLRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQM 1151

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLL 591
            E     L +R   E   + + Q+ +  L     E  +    +      Q   L  R + +
Sbjct: 1152 EARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAM 1211

Query: 592  SRQKEEIEKQIAQVTAKGEA-EKTAILISILHE-VHIQIHQIESQEAMIE 639
             RQ EE E++I ++ +  +  ++       ++E +  Q++ ++    + +
Sbjct: 1212 KRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLRLKK 1261



 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 87/252 (34%), Gaps = 19/252 (7%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           +++++L I +      ++ +       +  R+R++   ++  ++H+          +  +
Sbjct: 614 EQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLE 673

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +     R     L + K+ ++    E   L        + +   +  +  R ++ E   L
Sbjct: 674 ESEGELRKNLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSAKRSEDREKGAL 728

Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLW----SATTEAN 570
              L     + +  L  +  Q    R  ER    L   L  +V              +A 
Sbjct: 729 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 788

Query: 571 IVDVRQGYQQA------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           +  +R+  ++A      LA         +   E+  ++ Q   +    ++  L   + ++
Sbjct: 789 LQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQL 848

Query: 625 HIQIHQIESQEA 636
             QI  ++  EA
Sbjct: 849 QRQIEDLKGDEA 860



 Score = 37.2 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 102/331 (30%), Gaps = 13/331 (3%)

Query: 306  QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
            ++R L      +    D           A+   L       +   +     ED     R 
Sbjct: 699  EIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLR-KRE 757

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK--NCINHIKDQKLRYY 423
               TA +  + E +   D    +  E         R  +E   K    +    +   +  
Sbjct: 758  RELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQ 817

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                +R +L Q   + +   S          + + +            +K    +   L 
Sbjct: 818  AGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLE 877

Query: 484  EAAL------LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            EA +         +    A+  E      ++     E ++L   L  +  +++     + 
Sbjct: 878  EALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKN 937

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                     G+ +++L +++ D    S T+   + +    Y++     +    + RQ +E
Sbjct: 938  EMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKE--KNRRELAEMQRQLKE 995

Query: 598  --IEKQIAQVTAKGEAEKTAILISILHEVHI 626
              +E + +++TA    ++  ++   L +   
Sbjct: 996  KTLEAEKSRLTAMKMQDEMRLMEEELRDYQR 1026


>gi|6650548|gb|AAF21899.1|AF107843_1 TATA element modulatory factor [Rattus norvegicus]
          Length = 817

 Score = 45.3 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 65/175 (37%), Gaps = 7/175 (4%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +   Q      KL+     +E  L    ++   + ++     A +   ++  ++L  
Sbjct: 613 GKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMNELEEKSRSTQAAL---DSAYRELTD 669

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
              ++  +        + + +  +   EL   L++   +A          + D+R   Q+
Sbjct: 670 LHKANAAKDSEVQEAALRREMKAK--EELSGALEKAQEEARQQQEILALQVGDLRLALQR 727

Query: 581 AL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           A  A  ++   L  +  E+++++ +   +   E +  + S    +  QI  +++ 
Sbjct: 728 AEQAAARKEDYLRHEISELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 781


>gi|45382679|ref|NP_990805.1| myosin-10 [Gallus gallus]
 gi|212452|gb|AAA48988.1| nonmuscle myosin heavy chain [Gallus gallus]
          Length = 2007

 Score = 45.3 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 103/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 907  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 966

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 967  ERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1026

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              L+E  L+         + E   +LA+       L KL     +    +E++    E+ 
Sbjct: 1027 KFLKEKKLME------DRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKT 1080

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +      + 
Sbjct: 1081 RQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE---EELQAALARGDEEAVQK 1137

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1138 NNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTE 1185



 Score = 37.9 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 79/243 (32%), Gaps = 22/243 (9%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L   +++    ++++ + Y   +  ++RLQQ     + +           +K  
Sbjct: 1422 EENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ 1481

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1482 KKFDQMLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1536

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +                    + +L++  R            + ++
Sbjct: 1537 NKQLRADMEDLMSSKDDVGKN--------------VHELEKSKRTLEQQVEEMRTQLEEL 1582

Query: 575  RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                Q       R  +  +  +   ++  Q   +   EK  +L+  + E+  ++     Q
Sbjct: 1583 EDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQ 1642

Query: 635  EAM 637
             A+
Sbjct: 1643 RAL 1645


>gi|315221391|ref|ZP_07863312.1| ABC transporter, ATP-binding protein [Streptococcus anginosus
           F0211]
 gi|315189510|gb|EFU23204.1| ABC transporter, ATP-binding protein [Streptococcus anginosus
           F0211]
          Length = 632

 Score = 45.3 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 15/156 (9%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSDAGSTLYLGDYDYYLEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++      +     + T   +   ++  ++A  L +R   L  + EE+E Q  
Sbjct: 532 KAELEALREEKATAVEPAQPQSVTNYQLQ--KETQKEARKLARRLEQLEAEIEELEMQTT 589

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAMI 638
           ++T   +    A     L E+  ++ Q+ E QEA +
Sbjct: 590 ELTTAMQETNDAS---ELMELQQKLDQLTEQQEAAM 622


>gi|299890875|ref|NP_001177766.1| dynactin subunit 1 isoform 6 [Homo sapiens]
          Length = 1271

 Score = 45.3 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 233 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 292

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 293 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 352

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 353 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 412

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 413 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 472

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 473 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 532

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 533 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 588



 Score = 40.3 bits (92), Expect = 0.97,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 217 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 276

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 277 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 336

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 337 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 390

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 391 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 434



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 209 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 268

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 269 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 323


>gi|46198380|ref|YP_004047.1| hypothetical protein TTC0072 [Thermus thermophilus HB27]
 gi|46196002|gb|AAS80420.1| hypothetical protein TT_C0072 [Thermus thermophilus HB27]
          Length = 447

 Score = 45.3 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            + EL  L   +       K        +    R   E L+ L+ ++R+A    A     
Sbjct: 129 ASRELAALREEVARLEARGKALEEALRAREAEVRAKEEALRALEARLREAEAELAQARKE 188

Query: 571 IVDV----RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
              +     +     +AL  R   L R +E +E++ +++      E  A +   L E   
Sbjct: 189 REALLGERERLEADLVALQGRVLDLRRSREVLEEEASRLR-----EALARVRQELAEEER 243

Query: 627 QIHQIESQEAMIEG 640
           ++  +  Q  ++EG
Sbjct: 244 RVQGLLVQARVLEG 257


>gi|238754674|ref|ZP_04616027.1| Replicative DNA helicase [Yersinia ruckeri ATCC 29473]
 gi|238707133|gb|EEP99497.1| Replicative DNA helicase [Yersinia ruckeri ATCC 29473]
          Length = 468

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/142 (9%), Positives = 43/142 (30%), Gaps = 3/142 (2%)

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
           +             +   KL       E ++L  L+          + +    + +   +
Sbjct: 4   KKPTNNMTVPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVTSNDFFSRPHR 63

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
           ++++ +       K      + + L ++G    L+ +      A L   T  A  +    
Sbjct: 64  RIFTEMQRLLEMSKPIDLITLSESLEQKGD---LESVGGFAYLAELSKNTPSAANIGAYA 120

Query: 577 GYQQALALYKRFRLLSRQKEEI 598
              +  A+ +    ++ +  + 
Sbjct: 121 DIVRERAVVREMISVANEIADA 142


>gi|182417634|ref|ZP_02948953.1| replicative DNA helicase [Clostridium butyricum 5521]
 gi|237667822|ref|ZP_04527806.1| replicative DNA helicase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378358|gb|EDT75889.1| replicative DNA helicase [Clostridium butyricum 5521]
 gi|237656170|gb|EEP53726.1| replicative DNA helicase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 434

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/161 (10%), Positives = 50/161 (31%), Gaps = 18/161 (11%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           EA +L  + ++  I+ E   EL    + +   + +++ +   F E K      I   + +
Sbjct: 14  EAEILGAVFHNGKIMGEVINELEADDFYSTANKTIYTHMCRLFAEGKDINLTLIVNSIGK 73

Query: 544 RGFG---------ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                        +++           +     ++    V +   +A+      +    +
Sbjct: 74  DNLKSAGGITYISDIITGGLNINPAHYINIVKEKSYRRKVIKELTKAVEKIYDEKNNPYE 133

Query: 595 KEE------IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             +      + K + +     + E        L E+  ++ 
Sbjct: 134 ITDAMVNILLNKNLGKSNIMRDNELFEAT---LLEIDRRLK 171


>gi|194675865|ref|XP_597858.4| PREDICTED: myosin XVIIIA isoform 2 [Bos taurus]
 gi|297486552|ref|XP_002695716.1| PREDICTED: myosin XVIIIA [Bos taurus]
 gi|296476878|gb|DAA18993.1| myosin XVIIIA [Bos taurus]
          Length = 2040

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 37/349 (10%), Positives = 90/349 (25%), Gaps = 31/349 (8%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   +  +  D   F +      
Sbjct: 1462 RRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQMEEKDMDIAGFTQKVVSLE 1521

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1522 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1581

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E  L   
Sbjct: 1582 RMRQTHSKEMENRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELEGKLATL 1640

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1641 SDQVNQRDFESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQLKNQLEESEFT- 1699

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1700 ----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1755

Query: 609  GE-----------------------AEKTAILISILHEVHIQIHQIESQ 634
                                       +         E+  ++  ++SQ
Sbjct: 1756 MNELMKKHKAAVAQASRDLAQMNDLQAQLEEANKEKQELQEKLQALQSQ 1804



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1780 LQAQLEEANKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFER 1836

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + ++  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1837 TQVKRLESLASRLKDNMEKLTEERDQRAAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1896



 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 36/316 (11%), Positives = 94/316 (29%), Gaps = 38/316 (12%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                       +      ++  VD   KR  +        E+       +   +   D  
Sbjct: 1361 GEVADGDTGGEWRLKYERAMREVDFTKKRLQQEFEDKLEVEQQSKRQLERRLGDLQADSD 1420

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA---RHRDQKGPSQRLMQSSLVKGKL 476
                  Q ++ + Q+L  +             +N    + + +             + KL
Sbjct: 1421 ESQRTLQQLKKKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEEAQREKL 1480

Query: 477  SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLP 534
             ++   RE  +L  L    ++ Q+  ++  DI     ++  L + L   S    +     
Sbjct: 1481 QREKLQREKDML--LAEAFSLKQQMEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASL 1538

Query: 535  EEIHQRLCE--RGFGELLKQLDRQVRDAGL---------------------WSATTEANI 571
             ++ ++L +      +  ++LD Q     +                          +  +
Sbjct: 1539 AKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEMERMRQTHSKEMENRDEEV 1598

Query: 572  VDVRQ--------GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
             + RQ           Q    Y+  + + R+K E+E ++A ++ +           +  +
Sbjct: 1599 EEARQSCQKKLKQMEVQLEEEYEDKQKVLREKRELEGKLATLSDQVNQRDFESEKRLRKD 1658

Query: 624  VHIQIHQIESQEAMIE 639
            +      +   + M++
Sbjct: 1659 LKRTKALLADAQIMLD 1674


>gi|62739772|gb|AAH93827.1| Cingulin-like 1 [Homo sapiens]
 gi|85567512|gb|AAI12050.1| Cingulin-like 1 [Homo sapiens]
          Length = 1302

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 95/290 (32%), Gaps = 10/290 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y +    +L      L +   + E    +     +   L           +D+ 
Sbjct: 972  QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEA 1031

Query: 420  L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L  R    Q ++D   +L  K   +        +   +    +   +    +S +  +  
Sbjct: 1032 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERI 1091

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLP 534
             +   +   L   L+   A  Q+   +   +   N +L+     L   +    E      
Sbjct: 1092 SRSREQMEQLRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQM 1151

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLL 591
            E     L +R   E   + + Q+ +  L     E  +    +      Q   L  R + +
Sbjct: 1152 EARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAM 1211

Query: 592  SRQKEEIEKQIAQVTAKGEA-EKTAILISILHE-VHIQIHQIESQEAMIE 639
             RQ EE E++I ++ +  +  ++       ++E +  Q++ ++    + +
Sbjct: 1212 KRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLRLKK 1261



 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 87/252 (34%), Gaps = 19/252 (7%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           +++++L I +      ++ +       +  R+R++   ++  ++H+          +  +
Sbjct: 614 EQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLE 673

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +     R     L + K+ ++    E   L        + +   +  +  R ++ E   L
Sbjct: 674 ESEGELRKNLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSAKRSEDREKGAL 728

Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLW----SATTEAN 570
              L     + +  L  +  Q    R  ER    L   L  +V              +A 
Sbjct: 729 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 788

Query: 571 IVDVRQGYQQA------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           +  +R+  ++A      LA         +   E+  ++ Q   +    ++  L   + ++
Sbjct: 789 LQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQL 848

Query: 625 HIQIHQIESQEA 636
             QI  ++  EA
Sbjct: 849 QRQIEDLKGDEA 860



 Score = 37.2 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 102/331 (30%), Gaps = 13/331 (3%)

Query: 306  QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
            ++R L      +    D           A+   L       +   +     ED     R 
Sbjct: 699  EIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLR-KRE 757

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK--NCINHIKDQKLRYY 423
               TA +  + E +   D    +  E         R  +E   K    +    +   +  
Sbjct: 758  RELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQ 817

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                +R +L Q   + +   S          + + +            +K    +   L 
Sbjct: 818  AGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLE 877

Query: 484  EAAL------LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            EA +         +    A+  E      ++     E ++L   L  +  +++     + 
Sbjct: 878  EALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKN 937

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                     G+ +++L +++ D    S T+   + +    Y++     +    + RQ +E
Sbjct: 938  EMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKE--KNRRELAEMQRQLKE 995

Query: 598  --IEKQIAQVTAKGEAEKTAILISILHEVHI 626
              +E + +++TA    ++  ++   L +   
Sbjct: 996  KTLEAEKSRLTAMKMQDEMRLMEEELRDYQR 1026


>gi|83591750|ref|YP_425502.1| DnaB helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83574664|gb|ABC21215.1| DnaB helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 507

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 37/131 (28%), Gaps = 3/131 (2%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
             +      +    +L       E ALL  ++ +  +L++    L    + +     ++ 
Sbjct: 8   AQNDPSAGPAAEATRLPPANIEAEQALLGAILTNNRVLEKVGDFLRPAHFSHPAHGAIYE 67

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
              +         P  +   L        L+++      A L +A       +       
Sbjct: 68  ACVTLTERGHLANPVTLAPYL---DHRTELEEVGGARYLAQLVNAVVTIINAEDYGTLVH 124

Query: 581 ALALYKRFRLL 591
            L L +    L
Sbjct: 125 DLFLRRELIAL 135


>gi|13259510|ref|NP_004073.2| dynactin subunit 1 isoform 1 [Homo sapiens]
 gi|17375490|sp|Q14203|DCTN1_HUMAN RecName: Full=Dynactin subunit 1; AltName: Full=150 kDa
           dynein-associated polypeptide; AltName: Full=DAP-150;
           Short=DP-150; AltName: Full=p135; AltName:
           Full=p150-glued
 gi|5915904|gb|AAD55811.1| dynactin 1 p150 isoform [Homo sapiens]
          Length = 1278

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 419

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 479

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595



 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330


>gi|299890871|ref|NP_001177765.1| dynactin subunit 1 isoform 5 [Homo sapiens]
          Length = 1236

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 203 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 322

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 383 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 442

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 443 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 502

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 306

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 361 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 404



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 179 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 238

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 239 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 293


>gi|291245067|ref|XP_002742413.1| PREDICTED: myosin, heavy chain 10, non-muscle-like [Saccoglossus
            kowalevskii]
          Length = 1964

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 80/260 (30%), Gaps = 23/260 (8%)

Query: 378  SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
            +          + E R     D    L    K     ++D + +    +  R +L     
Sbjct: 913  AKKQELEEILHDLEARIEEEEDRNQHLVNEKKKMTITVQDLEEQLEEEEQARQKLHLDKV 972

Query: 438  KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLSKKPSLREAALLLTLINHPA 496
                +             +  +    ++ ++    +  +   +   +   L    + H A
Sbjct: 973  ALDAKVKKMDEDLALLEDNNAKITKEKKSIEDRFNEVSRQLAEEEDKAKQLSKLKVKHEA 1032

Query: 497  ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
             + +  + L        EL+KL   L ++  +                   E L +L +Q
Sbjct: 1033 NIGDLDRRLKKEEKLRQELEKLRRKLETEISD-----------------LKEQLAELKQQ 1075

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
            + +     A TE    ++ Q   +            +   E+E Q+ +     +AEK A 
Sbjct: 1076 LLEVQTQLARTE---EELNQALARCDEEAAAKVAAQKALRELENQLQETEEDLQAEKEAR 1132

Query: 617  LISILH--EVHIQIHQIESQ 634
              +     ++  ++  ++++
Sbjct: 1133 NKAEKQKRDLGEELEALKTE 1152



 Score = 37.6 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 34/306 (11%), Positives = 90/306 (29%), Gaps = 30/306 (9%)

Query: 350  FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM--LWKRETENRSFNTPDERAELEIH 407
            +  +    D  + +R       +KL  +    V      ++  ++ S    D   + +  
Sbjct: 1624 YHDMQSQLDMSNKVRDDSIKQLKKLQAQMKDCVHDLEEARQSRDHLSHVAKDNEKKAKHL 1683

Query: 408  LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR------------ 455
                +   +D        +   +   +L  +  +  +G      +  R            
Sbjct: 1684 EAELMQLHEDLASAERLRKQAENERDELADEISSNTAGRSALADEKRRLEQRIQTLEEDL 1743

Query: 456  --HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
               +          +    + +        E +    L N   +L+ Q +EL        
Sbjct: 1744 DEEQSNVEILVDKERKMGSQVEQLTTELAAERSSTQRLENSRMLLERQNKELKAKL---Q 1800

Query: 514  ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            EL+ +        + Q       + ++L +            +  +  L     +A    
Sbjct: 1801 ELEVVAKTRSKATINQLEIKIANLEEQLEQETKDRHAAHKSNRRMEKKLKELVMQAEDER 1860

Query: 574  VR-QGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAK---------GEAEKTAILISILH 622
             +   Y++ +  +  R + L RQ +E E++  +  A           + E    L   ++
Sbjct: 1861 RQGDQYKEQVDKVNSRVKGLKRQLDEAEEEFTRANASKRKLQRDLDDQIEANESLTREIN 1920

Query: 623  EVHIQI 628
            ++  ++
Sbjct: 1921 QLKNKL 1926


>gi|291239605|ref|XP_002739711.1| PREDICTED: kinesin family member 20A-like [Saccoglossus kowalevskii]
          Length = 2595

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 95/291 (32%), Gaps = 17/291 (5%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                  +            +  ++   +      S    +          +     K + 
Sbjct: 1379 QDLHDVHSSEEVLLEKTRKMNQLECSIEVAESLVSDLKKELAEVKLNQTSSEEKVTKYEA 1438

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                  + +++    +  + I ++           + +  +  S    +         ++
Sbjct: 1439 EITDLQKQVKNLENVIKDEEIKKNDLKNSLESTETKAKKMENASVEKEEKLERLENELEQ 1498

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
               REAALL         L+++ +EL  ++  ++EL++    L  +    E+K    E  
Sbjct: 1499 LKKREAALLS----ESEHLKDEEKELQQLKIKDSELKREVKILTKNLKKAEEKASALEHE 1554

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV-RQGYQQALALYKRFRLLSRQKE 596
             ++L E+   ++  Q++   + A       + N  +   +   +   L K+ + L    +
Sbjct: 1555 VKQLQEQ-VKQVESQVEETKKSAEKQQKDFKMNSEERGIKYEAEITDLQKQLKDLENMIK 1613

Query: 597  E-------IEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            +       ++  +   +  AK   + +      L     ++ Q++ +EA +
Sbjct: 1614 DEEIKKNDLKNSLESTEAKAKRMEDASIEKEEKLERFENELEQLKKREAAL 1664


>gi|118601017|ref|NP_031861.2| dynactin subunit 1 isoform 1 [Mus musculus]
          Length = 1281

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%)

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
                  L +L    +      +   +   +  DL              L ++    +  
Sbjct: 238 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 297

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                      L  E         ++E E       +   +LEI          D     
Sbjct: 298 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 357

Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Y  + + ++  +L    +           +     +  +  +Q L      + +L ++ S
Sbjct: 358 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELS 417

Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538
             E+ +        A L  +E  + L D   +  E +++L   +       +     + +
Sbjct: 418 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 477

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R  E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    
Sbjct: 478 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 537

Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
           ++   +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 538 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 224 VRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441



 Score = 37.2 bits (84), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  +  +A + ++ +   Q          + ++   L R+
Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330


>gi|114578181|ref|XP_001156821.1| PREDICTED: dynactin 1 isoform 17 [Pan troglodytes]
 gi|332813454|ref|XP_001156762.2| PREDICTED: dynactin subunit 1 isoform 16 [Pan troglodytes]
          Length = 1253

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310


>gi|110815859|ref|NP_941004.2| protein CASP isoform b [Mus musculus]
          Length = 676

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 97/282 (34%), Gaps = 16/282 (5%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + E + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 101 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q   ++        ++  ++   +   +          KL +     +           
Sbjct: 161 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRT 220

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 221 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 280

Query: 554 DRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQI 602
            ++               +  A  E  I  + +  Q+  A   + R  S  Q  ++E+Q+
Sbjct: 281 IQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQL 340

Query: 603 AQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
               +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 341 NAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 382


>gi|73980499|ref|XP_866328.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 12 [Canis
           familiaris]
          Length = 1274

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 233 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 292

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 293 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 352

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 353 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 412

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 413 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 472

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 473 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 532

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 533 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 588



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 217 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 276

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 277 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 336

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 337 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 390

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 391 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 434



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 209 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 268

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 269 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 323


>gi|297266319|ref|XP_001107877.2| PREDICTED: dynactin subunit 1-like isoform 1 [Macaca mulatta]
          Length = 1236

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 203 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 322

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 383 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 442

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 443 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 502

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 306

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 361 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 404



 Score = 37.9 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 179 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 238

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 239 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 293


>gi|223040107|ref|ZP_03610387.1| replicative DNA helicase [Campylobacter rectus RM3267]
 gi|222878584|gb|EEF13685.1| replicative DNA helicase [Campylobacter rectus RM3267]
          Length = 469

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 9/98 (9%), Positives = 31/98 (31%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A+L ++I     L E +  ++   +       ++  +     E        +  +L  
Sbjct: 17  ERAILASIIYSADNLSEIFDIISPFDFYLRAHGDVYDAMVKCLNENLPVETGFLKTKLGS 76

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +    ++ ++        +     E     +++   + 
Sbjct: 77  KFDENVMSEIIGTNSILDVKKYANEIKEKSIKRSLVKI 114


>gi|195114526|ref|XP_002001818.1| GI17055 [Drosophila mojavensis]
 gi|193912393|gb|EDW11260.1| GI17055 [Drosophila mojavensis]
          Length = 2153

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 74/261 (28%), Gaps = 22/261 (8%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1763 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1822

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1823 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1875

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFL-----PEEIHQRLCER------GFGELL 550
             +    +   +   ++    L     +               ++L            ELL
Sbjct: 1876 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1935

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
             +       A            ++R     A    K  + L +Q +E++ ++ +  A   
Sbjct: 1936 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1995

Query: 608  KGEAEKTAILISILHEVHIQI 628
            KG  +    L   + E+  ++
Sbjct: 1996 KGGKKAIQKLEQRVRELENEL 2016


>gi|119620093|gb|EAW99687.1| dynactin 1 (p150, glued homolog, Drosophila), isoform CRA_d [Homo
           sapiens]
          Length = 1265

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 227 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 286

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 287 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 346

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 347 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 406

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 407 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 466

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 467 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 526

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 527 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 582



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 211 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 270

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 271 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 330

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 331 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 384

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 385 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 428



 Score = 37.9 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 203 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 262

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 263 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 317


>gi|114578173|ref|XP_001156479.1| PREDICTED: dynactin subunit 1 isoform 11 [Pan troglodytes]
          Length = 1271

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 233 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 292

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 293 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 352

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 353 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 412

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 413 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 472

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 473 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 532

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 533 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 588



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 217 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 276

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 277 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 336

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 337 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 390

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 391 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 434



 Score = 37.9 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 209 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 268

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 269 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 323


>gi|149234198|ref|XP_001474905.1| PREDICTED: rootletin [Mus musculus]
          Length = 1710

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 33/325 (10%), Positives = 99/325 (30%), Gaps = 53/325 (16%)

Query: 357  EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            +D  S      K A  + + +            +         E   L+      +  ++
Sbjct: 954  KDTLSLSLAEEKEAAARWMEQQK-----ELLTRSAADREALQGEIQNLKQERDESLLQLE 1008

Query: 417  DQKLRYYYSQAIRDRL--QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
             +  +    +     L  ++L   +            +  +         + +++  V+ 
Sbjct: 1009 HEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQF 1068

Query: 475  KLSKKPSLREAALLL-----TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            + +     REA  L            ++ +E  +  A +   +  L +L   L +    +
Sbjct: 1069 EEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESR 1128

Query: 530  KYFLPEEIHQR--LCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
            +    E +  R  L +     ++L+  + ++R +   +   +A++   ++  +Q L L +
Sbjct: 1129 EGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQ 1188

Query: 587  ---------------RFRLLSRQKEEIEKQIAQ-----------------------VTAK 608
                           R + L R + +  +++ +                           
Sbjct: 1189 EAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVS 1248

Query: 609  GEAEKTAILISILHEVHIQIHQIES 633
             +A+     +    E+  Q+ + ++
Sbjct: 1249 RDAQHRQKNLQESLELQRQVAEAQA 1273


>gi|77163758|ref|YP_342283.1| DnaB helicase [Nitrosococcus oceani ATCC 19707]
 gi|254436137|ref|ZP_05049644.1| replicative DNA helicase [Nitrosococcus oceani AFC27]
 gi|76882072|gb|ABA56753.1| primary replicative DNA helicase [Nitrosococcus oceani ATCC 19707]
 gi|207089248|gb|EDZ66520.1| replicative DNA helicase [Nitrosococcus oceani AFC27]
          Length = 472

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 48/165 (29%), Gaps = 6/165 (3%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++       E ++L  L+      ++    L    +   + + L+  +     + +    
Sbjct: 18  RIPPHSMEAEQSVLGGLLLDNQAWEQIADILGSEDFYRQDHRLLFLSIGEMLEQSRPCDV 77

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L  +        L+     A L +           + Y + +      R L R 
Sbjct: 78  VTLSEWLKNKRL------LEETGGLAYLTNLARNTPTAANIKAYAEVVRERSVLRQLIRV 131

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             +I     Q   +   E        + E+  Q  + +     I+
Sbjct: 132 GTDIAGSAYQPEGRESGELLDEAEKRVFEIAEQGARGQRSFVNIK 176


>gi|62471805|ref|NP_001014552.1| zipper, isoform D [Drosophila melanogaster]
 gi|61678342|gb|AAX52687.1| zipper, isoform D [Drosophila melanogaster]
          Length = 2016

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D +     AA  +   +   L        +     ED     +       + L       
Sbjct: 1649 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1708

Query: 382  VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                  +  ++          AE+    ++  +  + ++        + + +     K  
Sbjct: 1709 AAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1768

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                   R   + A   ++    Q   +  L +   S+K  L+   L   L N  +  Q+
Sbjct: 1769 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1825

Query: 501  QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                 A +   N EL+   + +           +         + ++L   G   LL+Q 
Sbjct: 1826 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1885

Query: 554  DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610
              +  D  +   T         V Q  +Q   L  R +LL R  +E E+++  + T K +
Sbjct: 1886 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1945

Query: 611  AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648
             ++    +    E ++ +I+ ++++     G G  S RL
Sbjct: 1946 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 1984


>gi|74746874|sp|Q5VT25|MRCKA_HUMAN RecName: Full=Serine/threonine-protein kinase MRCK alpha; AltName:
           Full=CDC42-binding protein kinase alpha; AltName:
           Full=DMPK-like alpha; AltName: Full=Myotonic dystrophy
           kinase-related CDC42-binding kinase alpha; Short=MRCK
           alpha; Short=Myotonic dystrophy protein kinase-like
           alpha
 gi|55665003|emb|CAH71185.1| CDC42 binding protein kinase alpha (DMPK-like) [Homo sapiens]
 gi|55666437|emb|CAH71336.1| CDC42 binding protein kinase alpha (DMPK-like) [Homo sapiens]
 gi|56206215|emb|CAI19109.1| CDC42 binding protein kinase alpha (DMPK-like) [Homo sapiens]
          Length = 1732

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV ++       E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           ++ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|309264118|ref|XP_982250.2| PREDICTED: rootletin [Mus musculus]
          Length = 1710

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 33/325 (10%), Positives = 99/325 (30%), Gaps = 53/325 (16%)

Query: 357  EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            +D  S      K A  + + +            +         E   L+      +  ++
Sbjct: 954  KDTLSLSLAEEKEAAARWMEQQK-----ELLTRSAADREALQGEIQNLKQERDESLLQLE 1008

Query: 417  DQKLRYYYSQAIRDRL--QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
             +  +    +     L  ++L   +            +  +         + +++  V+ 
Sbjct: 1009 HEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQF 1068

Query: 475  KLSKKPSLREAALLL-----TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            + +     REA  L            ++ +E  +  A +   +  L +L   L +    +
Sbjct: 1069 EEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESR 1128

Query: 530  KYFLPEEIHQR--LCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
            +    E +  R  L +     ++L+  + ++R +   +   +A++   ++  +Q L L +
Sbjct: 1129 EGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQ 1188

Query: 587  ---------------RFRLLSRQKEEIEKQIAQ-----------------------VTAK 608
                           R + L R + +  +++ +                           
Sbjct: 1189 EAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVS 1248

Query: 609  GEAEKTAILISILHEVHIQIHQIES 633
             +A+     +    E+  Q+ + ++
Sbjct: 1249 RDAQHRQKNLQESLELQRQVAEAQA 1273


>gi|297280638|ref|XP_001088134.2| PREDICTED: serine/threonine-protein kinase MRCK alpha isoform 1
           [Macaca mulatta]
          Length = 1732

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV +        E       ++ + ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKNLKEEIEKLRKQVTELSHLEQQLEEANAVRQELDEAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           ++ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|223462007|gb|AAI36334.1| CDC42BPA protein [Homo sapiens]
          Length = 1699

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV ++       E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           ++ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|148687364|gb|EDL19311.1| cut-like 1 (Drosophila), isoform CRA_d [Mus musculus]
          Length = 680

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 97/282 (34%), Gaps = 16/282 (5%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + E + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 105 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 164

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q   ++        ++  ++   +   +          KL +     +           
Sbjct: 165 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRT 224

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 225 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 284

Query: 554 DRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQI 602
            ++               +  A  E  I  + +  Q+  A   + R  S  Q  ++E+Q+
Sbjct: 285 IQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQL 344

Query: 603 AQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
               +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 345 NAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 386


>gi|297266317|ref|XP_001108486.2| PREDICTED: dynactin subunit 1-like isoform 9 [Macaca mulatta]
          Length = 1278

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 419

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 479

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441



 Score = 37.9 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330


>gi|73980503|ref|XP_866352.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 13 [Canis
           familiaris]
          Length = 1281

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 419

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 479

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441



 Score = 37.9 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330


>gi|24762818|ref|NP_726506.1| zipper, isoform B [Drosophila melanogaster]
 gi|21645103|gb|AAM70805.1| zipper, isoform B [Drosophila melanogaster]
          Length = 2011

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D +     AA  +   +   L        +     ED     +       + L       
Sbjct: 1644 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1703

Query: 382  VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                  +  ++          AE+    ++  +  + ++        + + +     K  
Sbjct: 1704 AAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1763

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                   R   + A   ++    Q   +  L +   S+K  L+   L   L N  +  Q+
Sbjct: 1764 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1820

Query: 501  QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                 A +   N EL+   + +           +         + ++L   G   LL+Q 
Sbjct: 1821 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1880

Query: 554  DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610
              +  D  +   T         V Q  +Q   L  R +LL R  +E E+++  + T K +
Sbjct: 1881 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1940

Query: 611  AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648
             ++    +    E ++ +I+ ++++     G G  S RL
Sbjct: 1941 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 1979


>gi|1945080|dbj|BAA19691.1| myosin [Mus musculus]
          Length = 1938

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 100/287 (34%), Gaps = 22/287 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E+E        ++ ELE  L      +++++ 
Sbjct: 877  ELEQKHTQLAEEKTLLQEQLQAETELYAESEEMRVRLAAKKQELEEILHEMEARLEEEED 936

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA R ++ Q       +        +K    +       + ++  ++        
Sbjct: 937  RRQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSK 996

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKY 531
              +E  LL         + +    LA+       L KL      + S+        E+  
Sbjct: 997  LSKERKLLE------ERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSR 1050

Query: 532  FLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
               E++ ++L      F E +  L  Q+ +  +  A  E  +        + +A   +  
Sbjct: 1051 QELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIA---QKN 1107

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
               ++  E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1108 NALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1154


>gi|134299977|ref|YP_001113473.1| hypothetical protein Dred_2131 [Desulfotomaculum reducens MI-1]
 gi|134052677|gb|ABO50648.1| hypothetical protein Dred_2131 [Desulfotomaculum reducens MI-1]
          Length = 675

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 18/124 (14%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG--- 60
            ++F+  +   I +    G+ +++   K+          C FH++   S     +     
Sbjct: 284 NQEFVDYIRKEINL----GELLEFKYPKSIR--------CIFHEDNNNSASIFQADDGAW 331

Query: 61  FYYCFSCHVKGDHLSFLSALLGC--SFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
            Y CF C V  + L  +  +LG   S  ++ + +  I  + +   + + E+KE +  ++ 
Sbjct: 332 IYKCFGCGVTYNILG-VIEVLGKFRSRPKAYRFIREIFNLEIQETEWQKEQKEILLENMK 390

Query: 119 RLIE 122
            L  
Sbjct: 391 VLNN 394


>gi|315223252|ref|ZP_07865113.1| hypothetical protein HMPREF0813_02003 [Streptococcus anginosus
           F0211]
 gi|315187684|gb|EFU21438.1| hypothetical protein HMPREF0813_02003 [Streptococcus anginosus
           F0211]
          Length = 2016

 Score = 45.3 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 33/89 (37%), Gaps = 13/89 (14%)

Query: 5   RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
           ++ +        I ++  Q  ++ +R   +    +       HD    S     +K  + 
Sbjct: 28  KERVDLARSR-DILDVAEQLGMELERAGRDYRWKE-------HD----SLVITPNKNVWK 75

Query: 64  CFSCHVKGDHLSFLSALLGCSFIESVQRL 92
            FS    GD ++ +  +   +F +++  L
Sbjct: 76  WFSRDQGGDVIALVETIKEINFNQAIDYL 104


>gi|297280636|ref|XP_002801950.1| PREDICTED: serine/threonine-protein kinase MRCK alpha isoform 2
           [Macaca mulatta]
          Length = 1754

 Score = 45.3 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV +        E       ++ + ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKNLKEEIEKLRKQVTELSHLEQQLEEANAVRQELDEAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           ++ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|224009922|ref|XP_002293919.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970591|gb|EED88928.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1532

 Score = 45.3 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 51/131 (38%), Gaps = 12/131 (9%)

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRL-----CERGFGELLKQLD--RQVRDAGLWSATTEA 569
           +L + L     EQ      ++ ++L           E+  +L+  R      L       
Sbjct: 606 RLRAALIR-LREQSEQERNDLQRQLKALQSDSSSKEEMQAELEALRSSHAKTLTEVKELK 664

Query: 570 NIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGE-AEKTAILISILHEVHIQ 627
            I+D     ++ +  L  +   L ++  E+E+ I ++    E A +   +     E+ + 
Sbjct: 665 EIIDQTTSLEETIETLSDKMWSLEQENAELERTIRELEESAEIAAELEEVQGE--ELKMV 722

Query: 628 IHQIESQEAMI 638
           +  +E ++A++
Sbjct: 723 MRDLEGRDALV 733


>gi|114578187|ref|XP_515556.2| PREDICTED: dynactin subunit 1 isoform 18 [Pan troglodytes]
          Length = 1236

 Score = 45.3 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 203 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 322

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 383 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 442

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 443 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 502

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 306

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 361 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 404



 Score = 37.9 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 179 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 238

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 239 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 293


>gi|114578169|ref|XP_001156535.1| PREDICTED: dynactin subunit 1 isoform 12 [Pan troglodytes]
          Length = 1278

 Score = 45.3 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 419

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 479

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441



 Score = 37.9 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330


>gi|114578185|ref|XP_001156426.1| PREDICTED: dynactin 1 isoform 10 [Pan troglodytes]
          Length = 1199

 Score = 45.3 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421



 Score = 37.9 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310


>gi|11067|emb|CAA46548.1| myosin II heavy chain [Schistosoma mansoni]
          Length = 528

 Score = 45.3 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 88/244 (36%), Gaps = 22/244 (9%)

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
           +R ++E  +K     + D++ +      ++ ++    ++   +        +K  + +  
Sbjct: 194 QRGDMEQRIKELEERLADEEDQAANLTEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 253

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
           K    R +QS + +         ++   L          +   + L       N L KL 
Sbjct: 254 KDNEIRTLQSEMAQQDEMIGKLNKDKKNLE------EENKRTQEALQAEEDKVNHLNKLK 307

Query: 520 SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568
           + L S   E +             E+  ++L    +   E +  L+R  RD        E
Sbjct: 308 AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQLRRKE 367

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI--LHEVHI 626
           A I  +   ++    L  +   L R+ +E++ +I ++    EAE+ A   +     ++  
Sbjct: 368 AEIGGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 424

Query: 627 QIHQ 630
           ++ +
Sbjct: 425 ELEE 428


>gi|4139121|gb|AAD03694.1| dynactin 1 [Homo sapiens]
          Length = 1261

 Score = 45.3 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 223 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 282

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 283 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 342

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 343 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 402

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 403 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 462

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 463 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 522

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 523 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 578



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 207 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 266

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 267 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 326

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 327 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 380

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 381 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 424



 Score = 37.9 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 199 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 258

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 259 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 313


>gi|11561808|gb|AAC83689.2| 101 kDa heat shock protein [Triticum aestivum]
          Length = 918

 Score = 45.3 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + I   +              + + +      
Sbjct: 394 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALE------KEKDKASKARLVE 447

Query: 567 TEANIVDVRQGYQQALALYKRF-------RLLSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
               + D+R   Q     Y++        R L +++EE++  + +   + +  + A L  
Sbjct: 448 VRKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAERRMDLARVADLKY 507

Query: 619 SILHEVHIQIHQIESQ 634
             L E+   I ++E +
Sbjct: 508 GALQEIDAAIAKLEGE 523


>gi|68492200|ref|XP_710120.1| likely vesicular transport factor Uso1p [Candida albicans SC5314]
 gi|46431250|gb|EAK90848.1| likely vesicular transport factor Uso1p [Candida albicans SC5314]
          Length = 1880

 Score = 45.3 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 68/245 (27%), Gaps = 16/245 (6%)

Query: 405  EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
                      I     +    Q    +                   +   +  D      
Sbjct: 807  IKARTKESETISGPDQQE--LQEALKKGNTSESTLKQLKEKLDSTEQAKKKLEDGINNMT 864

Query: 465  R-LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL- 522
            R L      K +   +   RE              ++   ++ ++   NNE ++  + L 
Sbjct: 865  RDLFHLKKSKSEAETQIKQREREFKNLTYEFENTKKDYELQINNLNKSNNEFKQKINELS 924

Query: 523  --FSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                   E   F  +++ ++L +       L+ +L                +  +  +  
Sbjct: 925  KKIESLTEDNKFNAKQLEEKLRDTEENNEHLMDKLRSASVAYNDLKKAKSESEEETVKAK 984

Query: 579  QQALALYKRFRLLSRQKEE-------IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            ++   L  +   L ++ +E       +E Q+  +T     EK   L   L  +     +I
Sbjct: 985  EELETLTSKIDNLEKELKEQQSKKNELEGQLQNITDSTN-EKFKELEDELKSIKKSNKEI 1043

Query: 632  ESQEA 636
             SQ +
Sbjct: 1044 SSQNS 1048


>gi|311893358|ref|NP_001185795.1| dynactin subunit 1 isoform 2 [Mus musculus]
          Length = 1264

 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%)

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
                  L +L    +      +   +   +  DL              L ++    +  
Sbjct: 221 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 280

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                      L  E         ++E E       +   +LEI          D     
Sbjct: 281 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 340

Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Y  + + ++  +L    +           +     +  +  +Q L      + +L ++ S
Sbjct: 341 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELS 400

Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538
             E+ +        A L  +E  + L D   +  E +++L   +       +     + +
Sbjct: 401 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 460

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R  E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    
Sbjct: 461 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 520

Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
           ++   +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 521 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 578



 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 207 VRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 266

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 267 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 326

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 327 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 380

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 381 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 424



 Score = 37.2 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  +  +A + ++ +   Q          + ++   L R+
Sbjct: 199 EEEGLRAQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 258

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 259 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 313


>gi|308468395|ref|XP_003096440.1| hypothetical protein CRE_19341 [Caenorhabditis remanei]
 gi|308243027|gb|EFO86979.1| hypothetical protein CRE_19341 [Caenorhabditis remanei]
          Length = 2619

 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 36/337 (10%), Positives = 98/337 (29%), Gaps = 28/337 (8%)

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
              +K        +  D          ++ +            +      D  S  +   
Sbjct: 628 ENRFKYVQHKWTEWQMDTNSTTKVESVMEEIQMWQTD-----VLEFIGKVDNSSVTKKEE 682

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
               +K I       DM        +  N  +E+      L +  ++IK +  +  +   
Sbjct: 683 VEEIQKRISSFKNAADMHKTTLETLKEENKNEEQISRINVLIDKNDYIKTRLDQLSHKVE 742

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           +   L+ +    I +          N     Q    ++          L  +   +   L
Sbjct: 743 LTSLLKIVEDVQIWQEEMVEIIRNMNQVVTTQSNNQEQFEHLRRKIEDLKVEVEKKSEHL 802

Query: 488 LLTLINHPAILQEQYQELADIR-YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
                       E  + L+    +     + + +       EQ      E+ ++L     
Sbjct: 803 ------------EACKTLSQNETFQTQLHKTIQN------QEQIRLTTIELQEKLEISKL 844

Query: 547 GELLKQL----DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
             +++++    +  +    +   T  ANI +  +   +   L +     S + +E++K  
Sbjct: 845 IRVVQEIQMWQEEAIEIIRMLDRTQPANIQEANELIDRVHDLQQTIEHKSSRIQEVKKMS 904

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                  + E+   +   L  + +++ +   Q+ +++
Sbjct: 905 QVPEFVHKMEEVEHVQEQLKHLTVELEEKLEQQKLVK 941


>gi|291548124|emb|CBL21232.1| hypothetical protein CK1_34640 [Ruminococcus sp. SR1/5]
          Length = 276

 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 70  KG-DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI-RLIEVATDF 127
            G   L +L  + G SF+E+V+ LA  A +  P+   +       +  L  +  +     
Sbjct: 8   GGRSALDYLIKVRGYSFLEAVELLAERANIQPPLFVSENVP--MKKQLLFPKKNQDDQKV 65

Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
             + L    DK +  +  E G    +     + +    
Sbjct: 66  IAYLLGRGIDKEIIQFCLESGRVYESAFHHNVVFVGMD 103


>gi|303321544|ref|XP_003070766.1| hypothetical protein CPC735_038850 [Coccidioides posadasii C735
           delta SOWgp]
 gi|240110463|gb|EER28621.1| hypothetical protein CPC735_038850 [Coccidioides posadasii C735
           delta SOWgp]
          Length = 1252

 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 87/249 (34%), Gaps = 10/249 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            E +  +      R+ LE  + N    ++D+  +  + Q ++ R          +     
Sbjct: 565 EELKKANDELTLVRSSLEQQIANLQRTMQDE--KASHLQELKRREMLKSDALAAQKEELQ 622

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA- 506
            ++++  +  DQ    +   +   + G+  +  +  E  +     +   +  E   +L  
Sbjct: 623 GHFQEMKKKDDQAAAEKLRAREEELYGERDQLKAEWEQQMAALNKSKDDMAAEYEGKLDT 682

Query: 507 -DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
                +  +  +L +       +Q      +      +        +L  + ++     +
Sbjct: 683 KKTELETKQ-GELDAKQAELQAKQSELDARQEELNATKSDLEAKQAELVDRQKELEEKQS 741

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
             EA   ++ +   +   L  +   L  ++ E+E++  ++ +K    +   +   L EV 
Sbjct: 742 EVEAKQEEINRLKSE---LESKIAELEDKRRELEQKQGELESK--QTELQAIQDELQEVK 796

Query: 626 IQIHQIESQ 634
            ++ + +SQ
Sbjct: 797 AELEEKKSQ 805


>gi|242310225|ref|ZP_04809380.1| replicative DNA helicase [Helicobacter pullorum MIT 98-5489]
 gi|239523522|gb|EEQ63388.1| replicative DNA helicase [Helicobacter pullorum MIT 98-5489]
          Length = 485

 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 47/146 (32%), Gaps = 18/146 (12%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A+L ++   P  L    + L+   +     Q +++ +            E I ++  +
Sbjct: 6   ERAVLSSIFFDPEQLDNVAEILSPEDFLYTPNQNIFAAMLELRKLDMPIDEEFILKKSTK 65

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                      R +    + +      I D+     +      +     R+   +  +I 
Sbjct: 66  S----------RPISQEEILNILATNPISDLNSYINEI-----KEDSTKRKLHSLAMKIN 110

Query: 604 QVTAKGE---AEKTAILISILHEVHI 626
           + + + +    +    L S L+++  
Sbjct: 111 EASNEADHPVKDIIDYLQSELYKITN 136


>gi|242014184|ref|XP_002427775.1| myosin-9, putative [Pediculus humanus corporis]
 gi|212512229|gb|EEB15037.1| myosin-9, putative [Pediculus humanus corporis]
          Length = 1968

 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 97/300 (32%), Gaps = 18/300 (6%)

Query: 346  NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             +V   L ++ +    +   Y     EK+ ++     ++    E E         + ELE
Sbjct: 858  RQVRENLETQLKSALEYETKYKAAVEEKIQLQEQLQAEVELCAEAEEMRVRLAARKQELE 917

Query: 406  IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              L +    I++++ R     A + +LQ   Q    +        +K    + Q     +
Sbjct: 918  EILHDLEARIEEEEERSNSLSAEKKKLQINIQDLEEQLEEEEAARQKIQLEKVQCDAKIK 977

Query: 466  LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW------ 519
             ++  L   + + +   +E  +L           +  Q LA+       L KL       
Sbjct: 978  KLEEELALSEDTNQKLTKEKKILE------ERAADLAQALAEEEEKAKHLAKLKTKHEAT 1031

Query: 520  -----SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
                   L  D  +++     +           E L +   QV +  L     E  +   
Sbjct: 1032 IADLEEKLLKDNTQRQEMDRNKRRIEAEVSDLKEQLNERKTQVEELQLQLGKREEELSLA 1091

Query: 575  RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                 +  A   + +   R+ E    ++ +     +A ++        +++ ++  ++++
Sbjct: 1092 LMKIDEEGAGKAQVQKAIRELESQVAELQEDLEAEKAARSKAE-KQKRDLNEELEALKNE 1150


>gi|119590212|gb|EAW69806.1| CDC42 binding protein kinase alpha (DMPK-like), isoform CRA_a [Homo
           sapiens]
          Length = 1718

 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV ++       E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           ++ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|29373940|emb|CAD57745.1| CDC42 binding protein kinase alpha (DMPK-like) [Homo sapiens]
 gi|119590213|gb|EAW69807.1| CDC42 binding protein kinase alpha (DMPK-like), isoform CRA_b [Homo
           sapiens]
          Length = 1719

 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV ++       E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           ++ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|212451|gb|AAA48987.1| nonmuscle myosin heavy chain [Gallus gallus]
          Length = 1997

 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 103/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 897  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 956

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 957  ERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1016

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              L+E  L+         + E   +LA+       L KL     +    +E++    E+ 
Sbjct: 1017 KFLKEKKLME------DRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKT 1070

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +      + 
Sbjct: 1071 RQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE---EELQAALARGDEEAVQK 1127

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1128 NNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTE 1175



 Score = 37.9 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 79/243 (32%), Gaps = 22/243 (9%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L   +++    ++++ + Y   +  ++RLQQ     + +           +K  
Sbjct: 1412 EENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ 1471

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1472 KKFDQMLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1526

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +                    + +L++  R            + ++
Sbjct: 1527 NKQLRADMEDLMSSKDDVGKN--------------VHELEKSKRTLEQQVEEMRTQLEEL 1572

Query: 575  RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                Q       R  +  +  +   ++  Q   +   EK  +L+  + E+  ++     Q
Sbjct: 1573 EDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQ 1632

Query: 635  EAM 637
             A+
Sbjct: 1633 RAL 1635


>gi|13431676|sp|O08638|MYH11_MOUSE RecName: Full=Myosin-11; AltName: Full=Myosin heavy chain 11;
            AltName: Full=Myosin heavy chain, smooth muscle isoform;
            AltName: Full=SMMHC
 gi|1945078|dbj|BAA19690.1| myosin [Mus musculus]
          Length = 1972

 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 100/287 (34%), Gaps = 22/287 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E+E        ++ ELE  L      +++++ 
Sbjct: 877  ELEQKHTQLAEEKTLLQEQLQAETELYAESEEMRVRLAAKKQELEEILHEMEARLEEEED 936

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA R ++ Q       +        +K    +       + ++  ++        
Sbjct: 937  RRQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSK 996

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKY 531
              +E  LL         + +    LA+       L KL      + S+        E+  
Sbjct: 997  LSKERKLLE------ERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSR 1050

Query: 532  FLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
               E++ ++L      F E +  L  Q+ +  +  A  E  +        + +A   +  
Sbjct: 1051 QELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIA---QKN 1107

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
               ++  E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1108 NALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1154


>gi|51338816|sp|Q99323|MYSN_DROME RecName: Full=Myosin heavy chain, non-muscle; AltName: Full=Myosin
            II; AltName: Full=Non-muscle MHC; AltName: Full=Zipper
            protein
 gi|1572481|gb|AAB09049.1| nonmuscle myosin-II heavy chain [Drosophila melanogaster]
          Length = 2057

 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D +     AA  +   +   L        +     ED     +       + L       
Sbjct: 1690 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1749

Query: 382  VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                  +  ++          AE+    ++  +  + ++        + + +     K  
Sbjct: 1750 AAKEELQALSKEADGKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1809

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                   R   + A   ++    Q   +  L +   S+K  L+   L   L N  +  Q+
Sbjct: 1810 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1866

Query: 501  QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                 A +   N EL+   + +           +         + ++L   G   LL+Q 
Sbjct: 1867 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1926

Query: 554  DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610
              +  D  +   T         V Q  +Q   L  R +LL R  +E E+++  + T K +
Sbjct: 1927 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1986

Query: 611  AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648
             ++    +    E ++ +I+ ++++     G G  S RL
Sbjct: 1987 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 2025


>gi|315579062|gb|EFU91253.1| hypothetical protein HMPREF9511_00768 [Enterococcus faecalis
           TX0630]
          Length = 496

 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 43  CPFHDEKTPSFHCNDSK---GFYYCFS--CHVKGDHLSFLSALLGC-SFIESVQRLAAIA 96
           C FHD+  PS      K     ++C S  C V  D +  +  +L   S +E+   L    
Sbjct: 103 CLFHDDHNPSASIFTGKSGHSIFHCHSSNCGVSVDFIGVVMLILKKDSRVEAFNWLLE-- 160

Query: 97  GVPLPVVDPKIEKKEKIQTDLIRLIE 122
            + L     +  K+E     L   +E
Sbjct: 161 NLDLYPTHFRKLKEESK--VLFDTLE 184


>gi|256052226|ref|XP_002569676.1| hypothetical protein [Schistosoma mansoni]
 gi|227284382|emb|CAY16924.1| WD-repeat protein, putative [Schistosoma mansoni]
          Length = 1331

 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 72/215 (33%), Gaps = 10/215 (4%)

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            Y + + + +Q   +  +                +  +  +Q   Q +      S    + 
Sbjct: 842  YEKQLNN-IQLNHENLLNNTINNYELKLNEKNQKINELINQLKQQLNDHDLIKSLIEHIN 900

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            +  +L   I +  +  E+      ++   N+L  +   L +          ++    +  
Sbjct: 901  DQEILQLNIKYKKLFNEELNLNKKLK---NDLNLIQKQLINLQKIIDQLNLDKNKYNIEI 957

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA----LALYKRFRLLSRQKEEIE 599
            +    ++  L++ +++        +  I D  +           L K   +L  + +E++
Sbjct: 958  QKLNTIIFNLEKDLQNLHKDIQERDDTIQDKEKRILDLKKKNQELEKFKYVLDYKIKELK 1017

Query: 600  KQI--AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +QI   +   K   E+   + + L   H Q  Q+E
Sbjct: 1018 QQIEPRENDIKNYKEQIQEMETELQRFHKQNDQLE 1052


>gi|222100676|ref|YP_002535244.1| ATPase AAA-2 domain protein [Thermotoga neapolitana DSM 4359]
 gi|221573066|gb|ACM23878.1| ATPase AAA-2 domain protein [Thermotoga neapolitana DSM 4359]
          Length = 795

 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 73/223 (32%), Gaps = 18/223 (8%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKK-----NARHRDQKGPSQRLMQSSLVKGKLSK 478
           Y     +RL+    + + +      +  +      A   +    +  +++ +L +G++  
Sbjct: 246 YRGEFEERLKSFLDEVMKQKEKTILFIDEIHTIVGAGAAEGAMDAANMLKPALARGEIRV 305

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             +         +    A+ +     L        E  ++   L   + E          
Sbjct: 306 IGATTLDEYRKHIEKDKALARRFQPVLVKEP-SVEETIEILKGLKRVYEEHHKV------ 358

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            ++ +       K   R + D        +  I  + +   +    + +      + +E+
Sbjct: 359 -KIEDEAIEAAAKLSARYITDR----FLPDKAIDLLDEAAARVKLGFSKQEKDEARLQEL 413

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ-EAMIEG 640
           E++I ++  + +            ++  ++ +++S+ E++  G
Sbjct: 414 ERKIKELENRIDELTVRSQYKEAADLKKELFRLKSEYESLKSG 456


>gi|4558484|gb|AAD22629.1|AF097363_1 heat shock protein 101 [Triticum aestivum]
          Length = 918

 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + I   +              + + +      
Sbjct: 394 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALE------KEKDKASKARLVE 447

Query: 567 TEANIVDVRQGYQQALALYKRF-------RLLSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
               + D+R   Q     Y++        R L +++EE++  + +   + +  + A L  
Sbjct: 448 VRKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAERRMDLARVADLKY 507

Query: 619 SILHEVHIQIHQIESQ 634
             L E+   I ++E +
Sbjct: 508 GALQEIDAAIAKLEGE 523


>gi|152976937|ref|YP_001376454.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|189030426|sp|A7GTK1|MUTS2_BACCN RecName: Full=MutS2 protein
 gi|152025689|gb|ABS23459.1| MutS2 family protein [Bacillus cytotoxicus NVH 391-98]
          Length = 786

 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 19/162 (11%)

Query: 493 NHPAILQEQYQEL----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +    Y       A + +D N L   +  L         F   +    L ER    
Sbjct: 449 HYPELKAYGYNRNQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSERVINR 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + +++A  L K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWKEAEELRKQSEKLHR---ELQRQIIEFNEE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEAIIRELRQLRKAQLANVK 606


>gi|327284994|ref|XP_003227220.1| PREDICTED: myosin-XVIIIa-like [Anolis carolinensis]
          Length = 2364

 Score = 44.9 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 40/329 (12%), Positives = 98/329 (29%), Gaps = 39/329 (11%)

Query: 332  YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391
             K +D +   ++    +    L+   D D          +      ++  +D   KR  +
Sbjct: 1333 KKQMDSMEMEVMEARLIRAAELNGEMDDDDSG-----GEWRLKYERAIREIDFTKKRLQQ 1387

Query: 392  NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
                    E+       +   +   D +      Q ++ + Q+L  +             
Sbjct: 1388 EFEDKLEAEQQSKRQLERRLTDLQADGEETQRSLQTLKKKCQRLTAELQDTKLHLEGQQG 1447

Query: 452  KNA---RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL------------------LT 490
            +N    + + +             + KL ++   RE  +L                   T
Sbjct: 1448 RNHELEKKQRRFDSELSQAHEEAQREKLGREKLAREKDMLIAEAFGLKQQIEEKDSSLAT 1507

Query: 491  LINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            L      L+ + Q+L+     +   L K+   L     + K    E   Q    +   + 
Sbjct: 1508 LTQKVESLEAELQDLSSQESKDEASLAKVRKQLRDLEAKAKDQEEELDEQAGTIQMLEQA 1567

Query: 550  LKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALALYKRFRL-----------LSRQKEE 597
              +L+ ++       +   E+   +V +  Q      K+  +           + R+K +
Sbjct: 1568 KLRLEMEMERLRQTHSKEVESRDEEVEEIRQSCQKKLKQMEMQLEEEYEEKQKVLREKRD 1627

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHI 626
            +E ++A V+ +           +  ++  
Sbjct: 1628 LEGRLAAVSDQVNQRDFETEKRLRKDLKR 1656


>gi|307704879|ref|ZP_07641771.1| ABC transporter family protein [Streptococcus mitis SK597]
 gi|307621592|gb|EFO00637.1| ABC transporter family protein [Streptococcus mitis SK597]
          Length = 633

 Score = 44.9 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 59/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTILFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVDK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E + Q++       +   +   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KDEME-VSQIEETSTSNQVKEPSPVNDYQAQKESQKEVRKLMRQIENLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +AEK   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDAEKLMELQAELDKISHR-----QEEAMLE 625


>gi|297280640|ref|XP_002801951.1| PREDICTED: serine/threonine-protein kinase MRCK alpha isoform 3
           [Macaca mulatta]
          Length = 1699

 Score = 44.9 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV +        E       ++ + ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKNLKEEIEKLRKQVTELSHLEQQLEEANAVRQELDEAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           ++ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|260885469|ref|ZP_05735095.2| ATP-dependent chaperone protein ClpB [Prevotella tannerae ATCC
           51259]
 gi|260852438|gb|EEX72307.1| ATP-dependent chaperone protein ClpB [Prevotella tannerae ATCC
           51259]
          Length = 895

 Score = 44.9 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 77/222 (34%), Gaps = 26/222 (11%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
           + +QKY  +     R ++           +  +++    + +   K  +++ A++  + +
Sbjct: 344 EEYQKYFEKDKALERRFQTVTVDEPSTEDAISILRGLKERYENHHKVRIQDDAIIAAVQL 403

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           +H  I      +   I   +    KL         + +    +EI +RL +        +
Sbjct: 404 SHRYISDRFLPD-KAIDLMDEAAAKLRME-----RDSQPEELDEITRRLRQLEIEREAIK 457

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------AQV 605
            +                I  + +  +   A ++  R L  + +E +K++        + 
Sbjct: 458 RENDENKLAQL----NKEIATLEEREKNFRAKWEGERELLNKIQENKKEMERLKFEADRA 513

Query: 606 TAKGEAEK--------TAILISILHEVHIQIHQIESQEAMIE 639
             +G  E+           L + + ++   + Q +  EA+++
Sbjct: 514 EREGNYERVAEIRYGKLQALQAEIDKIQEDLKQRQGNEALVK 555


>gi|311252357|ref|XP_003125069.1| PREDICTED: dynactin subunit 1-like [Sus scrofa]
          Length = 1313

 Score = 44.9 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 272 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 331

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 332 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 391

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 392 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 451

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 452 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 511

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 512 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 571

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 572 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 627



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 256 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 315

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 316 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 375

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 376 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 429

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 430 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 473



 Score = 37.9 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 248 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 307

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 308 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 362


>gi|297663240|ref|XP_002810085.1| PREDICTED: lamin-A/C-like [Pongo abelii]
          Length = 790

 Score = 44.9 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 219 DSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTAL 278

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ + ++   + 
Sbjct: 279 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 334

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 335 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 380

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 381 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 437

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 438 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 491

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 492 KLALDMEIHAYRKLLEGEE 510


>gi|251798598|ref|YP_003013329.1| exonuclease [Paenibacillus sp. JDR-2]
 gi|247546224|gb|ACT03243.1| exonuclease, putative [Paenibacillus sp. JDR-2]
          Length = 1030

 Score = 44.9 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 85/261 (32%), Gaps = 20/261 (7%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
              +         +L    +     ++  K     ++ I  +L+QL Q+     +   + 
Sbjct: 590 LAEQQGELRKRWKQLNEEAERLGAQVEQGKQLKQRAEEIEQKLEQLLQEKDKLQAEQQQI 649

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI- 508
             +    +         +   L   K  +    ++ +L  +L    A  +E    L  + 
Sbjct: 650 AVERGAKQSALEKELERIPEELRSPKQMELRLKQQRSLAESLA---AAWKEAQDGLLRMR 706

Query: 509 -RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            ++   +              ++      ++  L  + F E L + +    +A   +   
Sbjct: 707 AKFAEEQAHA--------EQTEQQLAEARVNAALAAKRFEEELAKAEFSSEEAFREAHLP 758

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +     +++  +         R   ++ EE+E+++    +  +      L + + E+  +
Sbjct: 759 DQERRALKEQLEAYNTALAAAR---KRIEELEQEL----SGKQQADIEALKAAIAELKER 811

Query: 628 IHQIESQEAMIEGFGKMSGRL 648
           I    +   +   F + +G+L
Sbjct: 812 IEAATNALQIASRFAEDAGKL 832


>gi|224066189|ref|XP_002194816.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 724

 Score = 44.9 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 63/218 (28%), Gaps = 9/218 (4%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            +  ++  +    +       + K      +     +       +     +    E  +L
Sbjct: 20  AELFRKQEEFKKEKLLKDAGAFAKPRISNKKPSIWTKQNTGVANRAAKDVEQKAEEQDML 79

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                      + Y+++    + + E + L+  L      QK    +   Q L +     
Sbjct: 80  DKSRKKLEEKAKLYEKMTKGDFPDEETEDLY--LVDF--TQKIIDKQHEVQELHQSEAAG 135

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQVTA 607
              + D    +    +        D  + +   +    R  R + +    + K   ++  
Sbjct: 136 KTSERDTDEEETQPEADIP--PPEDPDEEWVDYVDFLGRSRRCMKKDLPSLLKMDQELQG 193

Query: 608 KGEAEKTAILISI--LHEVHIQIHQIESQEAMIEGFGK 643
           K        L+S     E+  Q  + E +EA+ +  G 
Sbjct: 194 KRCEPDGNTLLSEDMRRELQRQQWEKEEEEALRKPMGP 231


>gi|218886449|ref|YP_002435770.1| replicative DNA helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757403|gb|ACL08302.1| replicative DNA helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 450

 Score = 44.9 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/161 (8%), Positives = 45/161 (27%), Gaps = 12/161 (7%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            ++    +  E A+L  ++   ++L      L    +     Q+++      +       
Sbjct: 2   RRVPPHSTEAEQAVLGGILLRNSVLHSVVDTLRPEDFYLPAHQQIYDACLELYRRNAPID 61

Query: 534 PEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
              + + L  +             EL +            +   + ++  +R        
Sbjct: 62  LVTMAEYLQSQSRLEGVGGAVYLAELAQSTISAANAEHYSTIVRDKSL--LRSLIGAGSE 119

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           +       SR+ +++  +  Q         +  +     E+
Sbjct: 120 IISNCYDASREVQKLLDESEQAVFAISERVSGKMFRSAKEL 160


>gi|195121678|ref|XP_002005347.1| GI19126 [Drosophila mojavensis]
 gi|193910415|gb|EDW09282.1| GI19126 [Drosophila mojavensis]
          Length = 2047

 Score = 44.9 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D +     AA  A   +   L        +     ED     +       + L       
Sbjct: 1677 DEERKQRTAAVAAKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1736

Query: 382  VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                  +  ++          AE+    ++  +  + ++        + + +     K  
Sbjct: 1737 AAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIATNASKGS 1796

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                   R   + A   ++    Q   +  L +   S+K  L+   L   L N  +  Q+
Sbjct: 1797 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1853

Query: 501  QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                 A +   N EL+   + +           +         + ++L   G   LL+Q 
Sbjct: 1854 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1913

Query: 554  DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610
              +  D  +   T         V Q  +Q   L  R +LL R  +E E+++  + T K +
Sbjct: 1914 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1973

Query: 611  AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648
             ++    +    E ++ +I+ ++++     G G  S RL
Sbjct: 1974 YQRECEDMIESQEAMNREINSLKTKLRRTGGMGLSSSRL 2012



 Score = 37.6 bits (85), Expect = 7.0,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 98/275 (35%), Gaps = 26/275 (9%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
              EK+ +++           TE+++     E+  LE    +    + +++ +  +   ++
Sbjct: 1041 QLEKVQLDAKIKKHEEELALTEDQNQKLLKEKKVLEERANDLSQTLAEEEEKAKHLAKLK 1100

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS-----QRLMQSSLVKGKLSKKPSLRE 484
             + +    +         +  +++ R + +         ++L +  +   ++  + + RE
Sbjct: 1101 AKHEATIAELEERMHKDQQQRQESDRTKRKIETEVADLKEQLNERRIQVEEMQAQLAKRE 1160

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              L  TL+            + +        QK    L S   E +  L  E   R    
Sbjct: 1161 EELTQTLMR-----------IDEESASKAAAQKAQRELESQLAEIQEDLEAEKSARSKAE 1209

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                 L +    +++  L S  T A   ++R   +Q LA+ K+   L  +    E  +A+
Sbjct: 1210 KLRRDLSEELEALKNELLDSLDTTAAQQELRSKREQELAMLKK--SLEEEGVNHESVLAE 1267

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +  K            L+ ++ Q+  +   +A +E
Sbjct: 1268 MRHKH--------AQELNSINDQLENLRKAKAGLE 1294


>gi|30089962|ref|NP_003598.2| serine/threonine-protein kinase MRCK alpha isoform B [Homo sapiens]
 gi|55665001|emb|CAH71183.1| CDC42 binding protein kinase alpha (DMPK-like) [Homo sapiens]
 gi|55666438|emb|CAH71337.1| CDC42 binding protein kinase alpha (DMPK-like) [Homo sapiens]
 gi|56206214|emb|CAI19108.1| CDC42 binding protein kinase alpha (DMPK-like) [Homo sapiens]
          Length = 1719

 Score = 44.9 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV ++       E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           ++ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|4928755|gb|AAD33718.1|AF136711_1 myosin heavy chain [Amoeba proteus]
          Length = 2138

 Score = 44.9 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 31/288 (10%), Positives = 88/288 (30%), Gaps = 31/288 (10%)

Query: 387  KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
                E +     +     +          K ++L+    + + D  +   +      +  
Sbjct: 1745 NYLEEIKHKKDLEINELRKQLDAESEARDKFEQLKNELERDVADA-KHNLEAEKKSRTDA 1803

Query: 447  GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL- 505
             R  KK     D+             K +  +K +L+E  LL   +      +++ + L 
Sbjct: 1804 EREAKKAEAQYDELKHRSEASDRGKDKLEKERKRALKELRLLREKVEAIEAEKDEQERLA 1863

Query: 506  -----------ADIRYDNNE-------LQKLWSFLFSDFVEQKYFLP-----EEIHQRLC 542
                         +  ++          ++L   L       +         +++   L 
Sbjct: 1864 WKFQEEVDALTEALDLEHKARVAHEKIAKQLRVQLEDFKETAEDATRGKSRADQLTSELQ 1923

Query: 543  ER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                   + L + + + R+   +    ++ I D+++   + ++       L   K ++E+
Sbjct: 1924 AEIEDLKDQLDEEEERNRELANFKINNKSAIADLKKALDREISAR---EALEEAKRQLER 1980

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
               ++  + + E+ +   S          ++E   A +       G+L
Sbjct: 1981 DNNELRDQLDEERVSRGNSE-RAARKSFAELEDTNARLNALNASIGKL 2027



 Score = 38.3 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 100/337 (29%), Gaps = 13/337 (3%)

Query: 305  YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             +   L K + ++    D          +A   +   +        +     ED      
Sbjct: 1213 NKFSQLTKTNLKLKADLDELQDNREGGDQAFQKLKKLVAKLESDKKMKEKEYEDERDL-- 1270

Query: 365  CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-QKLRYY 423
               K   +K + ++          E           R +LE  L+   +  +D Q  R  
Sbjct: 1271 -KNKLDAQKKLSQAELDGLKNALEEMAKNRSREEKNRKDLENRLRELEDQAEDGQAARSN 1329

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              +  R     L                 +A  +  +   + L +S   + +  K    +
Sbjct: 1330 LEKKFRGFEDNLEDHQSQVDEVQDDVNVLSAAKKKLESELEALKRSLDNEAEGRKVAEEK 1389

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
               +L T ++   +     +        N   +K+   +     + +    E        
Sbjct: 1390 MK-VLDTELHELQLALSNAENKNTGLVRNV--KKVQDEVEDLNEQYENASKELSKLDKGN 1446

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEA----NIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            +     LK+L R V+++       E        ++ + + Q   L  +   L R K++++
Sbjct: 1447 KKTEAELKELRRHVQESQSSLDAGELKLRHTQDELDELHHQLEDLEAKSSSLERSKKQLQ 1506

Query: 600  KQIAQVTAKGEAEKTAILISIL--HEVHIQIHQIESQ 634
             Q+  +    E E  A   +     ++   + +++  
Sbjct: 1507 LQVDDLEDTHEEELAARTKAERLVKDLEADLAELQET 1543


>gi|159119806|ref|XP_001710121.1| Liver stage antigen-like protein [Giardia lamblia ATCC 50803]
 gi|157438239|gb|EDO82447.1| Liver stage antigen-like protein [Giardia lamblia ATCC 50803]
          Length = 1811

 Score = 44.9 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 86/297 (28%), Gaps = 33/297 (11%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              +        + +          L +           D+   L++  +     +  ++ 
Sbjct: 940  DALHGMSPEELQLMEQREREFNLKLKELTDRRDELLYKDDTEALKLIEEEIWAFVDAEEE 999

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS--K 478
            +    QA  D L++  Q+             K  + R  +    +    +L K +     
Sbjct: 1000 KKMRIQAADDLLKKRAQEEEDRRRAEIEAKIKEEQDRVAEERRLQEEMIALQKKQQQEYA 1059

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIR-YDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            +   R+A LL   +      +EQ + + + +       ++L   L +            +
Sbjct: 1060 EQETRKADLLREAME-----KEQLERIEEEQRIKAEARRRLIDDLEATAERAAAEDRIRV 1114

Query: 538  HQRLCE-----RGFGELLKQLDRQVRDAGLW--SATTEANIVDVRQGYQQALALYKRFRL 590
               L E     +   E  +    + R   L              R+  +     +K  + 
Sbjct: 1115 KAELEEMARIKKELEEAARTASEEKRKLLLQQKEQLEREMAETARRHEEDVARRHKELQT 1174

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAILISI-------------LHEVHIQIHQIESQ 634
            L  ++ ++ +Q         +E    L+                 ++  +I ++++Q
Sbjct: 1175 LHEERRKMREQ-----RLASSEPMDELLREDGNDASADPFSYASLDIERRIREMKAQ 1226



 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 66/235 (28%), Gaps = 12/235 (5%)

Query: 414  HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             + D + +    +   +RLQ+  +      +            +         + +    
Sbjct: 854  QMTDHEQQLIQLKDEAERLQRENKVLAGRSAAPRHLHPNEFDSKSISVSFFEGLLNEPTH 913

Query: 474  GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD-----NNELQKLWSFLFSDFVE 528
                   +  E  LL  L        +    ++            E       L     E
Sbjct: 914  SDGISLTTGEELRLLAILEQGDYEALDALHGMSPEELQLMEQREREFNLKLKELTDRRDE 973

Query: 529  QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV---RQGYQQALALY 585
              Y    E  + + E  +  +  + ++++R         +    +    R   +  +   
Sbjct: 974  LLYKDDTEALKLIEEEIWAFVDAEEEKKMRIQAADDLLKKRAQEEEDRRRAEIEAKIKEE 1033

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---LISILHEVHIQIHQIESQEAM 637
            +      R+ +E    + +   +  AE+      L+    E   Q+ +IE ++ +
Sbjct: 1034 QDRVAEERRLQEEMIALQKKQQQEYAEQETRKADLLREAME-KEQLERIEEEQRI 1087


>gi|324500751|gb|ADY40344.1| Structural maintenance of chromosomes protein 4 [Ascaris suum]
          Length = 1544

 Score = 44.9 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 83/245 (33%), Gaps = 15/245 (6%)

Query: 399  DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
            D   +    +    N++ +++ R    +    +L++      T++    R  +       
Sbjct: 766  DTSKDSAKEIAALQNYLDEEQERLVDIRRSIQQLEKRLNSVKTDYDRVKRNEQNLKTDIG 825

Query: 459  QKGPSQRLMQSSLVKGKLSKKPSLR-EAAL------LLTLINHPAILQEQYQEL-ADIRY 510
                    ++  L + K+  K +   E A+      +  L        E   E+   +  
Sbjct: 826  PLEEKIEGLEKRLKEQKVRAKEAAADERAVEKAKQKVAELEKERNAAAEVADEVREQVAE 885

Query: 511  DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
             + ++Q +++ L   F  Q         +    +G  +    ++   R+     A     
Sbjct: 886  VSAKIQAVYAELVEPFKRQ--LDEALARKESASKGIAKEKGAVNNAERNLNKAKARKNDL 943

Query: 571  IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
              D+++  +    ++       ++ EE+ KQ          E+     S L EV  +  Q
Sbjct: 944  EADLKETEEAIEKIHLNADNHVQRMEELMKQ-----KSERQEELKEAESRLKEVSNKFSQ 998

Query: 631  IESQE 635
            ++++E
Sbjct: 999  LDNEE 1003


>gi|268596499|ref|ZP_06130666.1| replicative DNA helicase [Neisseria gonorrhoeae FA19]
 gi|268550287|gb|EEZ45306.1| replicative DNA helicase [Neisseria gonorrhoeae FA19]
          Length = 467

 Score = 44.9 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520
            +       +    L       E ++L   ++ +PA        ++   +  +E + ++ 
Sbjct: 5   AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDGIADVVSGEDFYRHEHRLIFR 63

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +     E +      + + L         ++L+       L +           + Y +
Sbjct: 64  SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    R R + RQ  E+  +IA+     +      L+        QI   ES     +G
Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171

Query: 641 F 641
           F
Sbjct: 172 F 172


>gi|212450|gb|AAA48986.1| nonmuscle myosin heavy chain [Gallus gallus]
          Length = 1986

 Score = 44.9 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 103/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 886  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 945

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 946  ERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1005

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              L+E  L+         + E   +LA+       L KL     +    +E++    E+ 
Sbjct: 1006 KFLKEKKLME------DRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKT 1059

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +      + 
Sbjct: 1060 RQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE---EELQAALARGDEEAVQK 1116

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1117 NNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTE 1164



 Score = 37.9 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 79/243 (32%), Gaps = 22/243 (9%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L   +++    ++++ + Y   +  ++RLQQ     + +           +K  
Sbjct: 1401 EENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ 1460

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1461 KKFDQMLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1515

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +                    + +L++  R            + ++
Sbjct: 1516 NKQLRADMEDLMSSKDDVGKN--------------VHELEKSKRTLEQQVEEMRTQLEEL 1561

Query: 575  RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                Q       R  +  +  +   ++  Q   +   EK  +L+  + E+  ++     Q
Sbjct: 1562 EDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQ 1621

Query: 635  EAM 637
             A+
Sbjct: 1622 RAL 1624


>gi|2104495|gb|AAB57773.1| dynactin1 [Mus musculus]
          Length = 1281

 Score = 44.9 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%)

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
                  L +L    +      +   +   +  DL              L ++    +  
Sbjct: 238 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 297

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                      L  E         ++E E       +   +LEI          D     
Sbjct: 298 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 357

Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Y  + + ++  +L    +           +     +  +  +Q L      + +L ++ S
Sbjct: 358 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELS 417

Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538
             E+ +        A L  +E  + L D   +  E +++L   +       +     + +
Sbjct: 418 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDXLQEN 477

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R  E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    
Sbjct: 478 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 537

Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
           ++   +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 538 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 224 VRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441



 Score = 37.2 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  +  +A + ++ +   Q          + ++   L R+
Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330


>gi|319940834|ref|ZP_08015173.1| hypothetical protein HMPREF9464_00392 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805716|gb|EFW02497.1| hypothetical protein HMPREF9464_00392 [Sutterella wadsworthensis
           3_1_45B]
          Length = 343

 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 96/332 (28%), Gaps = 32/332 (9%)

Query: 42  CCPFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL 100
            CP    +   SF   +  G +YC  C + GD +  +       F++++  L  + G+P+
Sbjct: 36  PCPLCGGRDRFSFFAKEVGGRWYCRGCGM-GDGIKLVQQFTKKEFVQTLDHLETLLGLPV 94

Query: 101 PV-VDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159
           P     + E+    +  L    + A      +L           +D +      +    L
Sbjct: 95  PKGKQGRYERSAVARHKLWAEKQRAE---QSALWEK--AFPLGEIDRQTPVWRYLCARGL 149

Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219
           G    SR                 +  G  IDG   A     F   L         ++  
Sbjct: 150 GDLVPSRELRFVKRLA-----CWEVPDGQNIDGAAKARLVGEFPAMLA--------RLTN 196

Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279
             G+ ++   +    +  +  +    K                       +   + L EG
Sbjct: 197 AEGKFITLHRTYLTADGSKAPVHSAKKLAAGAVE--------NGVIRLYPAGGVVCLAEG 248

Query: 280 YMDVLSLCQ-AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGD--DPGLRAAYKAID 336
               LS+    G+        + +  +    +      I +C D D    G   AY+   
Sbjct: 249 IETALSVHALTGLPAWSVVSLSGMKRFGPETIPDGVRTIRICGDNDRSYAGAAGAYELAS 308

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
            +            +  + G D +  +  +G 
Sbjct: 309 RLRRSRPELEVSVHIPQAAGTDWNDVLLAHGM 340


>gi|218442742|ref|YP_002381062.1| lipopolysaccharide biosynthesis protein [Cyanothece sp. PCC 7424]
 gi|218175100|gb|ACK73832.1| lipopolysaccharide biosynthesis protein [Cyanothece sp. PCC 7424]
          Length = 778

 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 86/275 (31%), Gaps = 24/275 (8%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           S    Y K +    +  ++  ++          + ++         H  N  N   + +L
Sbjct: 149 STYINYAKESQRSPVTNAIRFIEQQLPEARAALNQSSSALTEFRRKH--NLDNPDSNAQL 206

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                Q  ++R+ +           Y +  ++          +      S      S   
Sbjct: 207 ASQTKQQSKERVAEAEIALNLTEQKYQQLQRQITEVGQDPSTAIIDSVLSQDSAYQSLLT 266

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFVEQKYFLPEEI 537
            LRE  +  TL            E      ++  LQ L      +          L    
Sbjct: 267 QLREIEIQYTL------------EKTRYASEHPILQDLKDRRDEIKRLLENHVQNLIGTQ 314

Query: 538 HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             RL ++    G++ + L  Q+    +  A  +  + ++RQ   QA   ++R   L ++ 
Sbjct: 315 KSRLADKTVASGDIQQDLANQLLQTRIDLAVQKKQLNELRQIETQANLNFQRIVQLQQEY 374

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            E+E+Q         ++     +  L E+ ++  Q
Sbjct: 375 RELERQYQ-----FNSQAVDDFLKKLQELRVREAQ 404


>gi|149036514|gb|EDL91132.1| dynactin 1, isoform CRA_a [Rattus norvegicus]
          Length = 1281

 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%)

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
                  L +L    +      +   +   +  DL              L ++    +  
Sbjct: 238 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 297

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                      L  E         ++E E       +   +LEI          D     
Sbjct: 298 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 357

Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Y  + + ++  +L    +           +     +  +  +Q L      + +L ++ S
Sbjct: 358 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELS 417

Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538
             E+ +        A L  +E  + L D   +  E +++L   +       +     + +
Sbjct: 418 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 477

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R  E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    
Sbjct: 478 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 537

Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
           ++   +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 538 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 224 VRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441


>gi|123445769|ref|XP_001311641.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121893459|gb|EAX98711.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 1513

 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 37/306 (12%), Positives = 94/306 (30%), Gaps = 21/306 (6%)

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP-LVDMLWKRETENRSFNTPDERAEL 404
             ++ +      D   F     K   E   +   P   D   K            +  + 
Sbjct: 328 MLISPMQDKNNSDLMQFTPQKSKDENEIFFLSPEPLKNDSSEKIHALESEIQKLKQDNKS 387

Query: 405 EIHLKNCINHIKDQK-----LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
                + +N  K        +       I ++  Q  ++  +         +   + +++
Sbjct: 388 LEEALSLVNSTKSDIKELENVIEQLQGEIAEK-DQKIKELSSSKENDEILQELEVQIQEK 446

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL- 518
           +  S+ L + +       K+    E  +        ++ +E  +        ++    L 
Sbjct: 447 ENISKSLQKKAEEIEMKEKENKELEQVIDSLKTEIDSLTKENEKLNKACERASDAATNLS 506

Query: 519 --WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
                +  +  +      EEI   L +    EL +++     D  L       +   + +
Sbjct: 507 KERDMIVDEMNKDINEKEEEIQNNLSK--IKELEQKIKDIETDKDLT--QNNKSEEIINE 562

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-------EVHIQIH 629
              +      + R L ++ +E+E+  AQ++     E    L + +        E+  +I 
Sbjct: 563 LQNKIQNNLSKIRKLEQKIKELEEANAQLSNNKSEEIINELQNEIQNNLSKIRELEQKIK 622

Query: 630 QIESQE 635
           ++ES +
Sbjct: 623 ELESTQ 628


>gi|329664672|ref|NP_001193189.1| TATA element modulatory factor [Bos taurus]
 gi|297488534|ref|XP_002697005.1| PREDICTED: TATA element modulatory factor 1-like [Bos taurus]
 gi|296474994|gb|DAA17109.1| TATA element modulatory factor 1-like [Bos taurus]
          Length = 1092

 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 87/261 (33%), Gaps = 33/261 (12%)

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN-ARHRDQKGPSQ 464
              K  I  IK++      S    D L++  ++         +  K+        K    
Sbjct: 521 DAAKKEIKSIKEELATRLNSSETADLLKEKDEQIRGLMEEGEKLSKQQLHNSNIIKKLRT 580

Query: 465 RLMQSSLVKGKLSKKPSLREAAL--LLTLI--------NHPA-------ILQEQYQELAD 507
           +  ++  +  KL+KK    E  L  L  ++         H         +++ Q ++L  
Sbjct: 581 KDKENENIIAKLNKKVQELEEELQHLKQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGR 640

Query: 508 IRYDNNELQK-----------LWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLD 554
           +  D NEL++            +  L            E     L        EL   L+
Sbjct: 641 LHIDINELEEKNRSIQAALDSAYKELTDLHKANAAKDSEAQEAALSREMRAKEELSAALE 700

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           +   +A     T    + D+R   Q+A     ++   L  +  E+++++ +   +   E 
Sbjct: 701 KAQEEARQQQETLAIQVGDLRLALQRAEQTAARKEDYLRHEISELQQRLQEAENR-NQEL 759

Query: 614 TAILISILHEVHIQIHQIESQ 634
           +  + S    +  QI  +++ 
Sbjct: 760 SQSVSSTTRPLLRQIENLQAT 780


>gi|110623251|emb|CAI94864.2| heat shock protein 101 [Triticum turgidum subsp. durum]
          Length = 913

 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + I   +              + + +      
Sbjct: 394 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALE------KEKDKASKARLVE 447

Query: 567 TEANIVDVRQGYQQALALYKRF-------RLLSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
               + D+R   Q     Y++        R L +++EE++  + +   + +  + A L  
Sbjct: 448 VRKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAERRMDLARVADLKY 507

Query: 619 SILHEVHIQIHQIESQ 634
             L E+   I ++E +
Sbjct: 508 GALQEIDAAIAKLEGE 523


>gi|1572482|gb|AAB09050.1| nonmuscle myosin-II heavy chain [Drosophila melanogaster]
          Length = 2012

 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 85/242 (35%), Gaps = 18/242 (7%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +  R   ++ I +                    +  AR    +   +    +S V    S
Sbjct: 1746 ETERDELAEEIAN-------NANKGSLMIDEKRRLEARIATLEEELEEEQSNSEVLLDRS 1798

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-------FSDFVEQK 530
            +K  L+   L   L N  +  Q+     A +   N EL+   + +           +   
Sbjct: 1799 RKAQLQIEQLTTELANEKSNSQKNENGRALLERQNKELKAKLAEIETAQRTKVKATIATL 1858

Query: 531  YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRF 588
                  + ++L   G   LL+Q   +  D  +   T         V Q  +Q   L  R 
Sbjct: 1859 EAKIANLEEQLENEGKERLLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRI 1918

Query: 589  RLLSRQKEEIEKQIA-QVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSG 646
            +LL R  +E E+++  + T K + ++    +    E ++ +I+ ++++     G G  S 
Sbjct: 1919 KLLKRNLDETEEELQKEKTQKRKYQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSS 1978

Query: 647  RL 648
            RL
Sbjct: 1979 RL 1980


>gi|332252028|ref|XP_003275155.1| PREDICTED: serine/threonine-protein kinase MRCK alpha isoform 1
           [Nomascus leucogenys]
          Length = 1719

 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV ++       E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           ++ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|149378353|ref|ZP_01896058.1| clpB protein [Marinobacter algicola DG893]
 gi|149357368|gb|EDM45885.1| clpB protein [Marinobacter algicola DG893]
          Length = 880

 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 507 DIRYDNN--ELQKLWSFLFSDFVEQKYFLPEE-IHQRLCERGFGELLKQLDRQVRDAGLW 563
            +        L  + S L    +EQ+    E+ + Q +  +   EL+++L+         
Sbjct: 420 SLNLSTPPRRLSHVRSELHQLGMEQELMTREQTLGQAIDHQREHELVERLETL----REE 475

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
           +   E    D R+   + + + ++       + E   +  + T + + E+   L S    
Sbjct: 476 AEELEQRWNDQRELVARLVDIREQLLSEDTAETEANAEANEATPETDEERPD-LKSEAAA 534

Query: 624 VHIQIHQIESQEAMI 638
           +  ++ ++++ E ++
Sbjct: 535 IEQELEELQADEPLV 549


>gi|153000572|ref|YP_001366253.1| exodeoxyribonuclease V subunit gamma [Shewanella baltica OS185]
 gi|151365190|gb|ABS08190.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS185]
          Length = 1270

 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 69/523 (13%), Positives = 149/523 (28%), Gaps = 30/523 (5%)

Query: 138 KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG--LLIDGDNS 195
                +L+   + +  I++++L       +      R       +  E    L    +  
Sbjct: 129 ADTCEHLNTSDMTADDIKLYQLCGRIADIFDQYLVYRPDWILAWEQNEHPDSLTKSLNED 188

Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255
                     LI   R    Q      R     + +  LN+P+T L    + L+ F  + 
Sbjct: 189 QRWQPILWRALIAFNRDELNQSHYH--RANLHSDLIAALNNPDTSLAQLPQRLFVFGISS 246

Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315
              Q              I+L               +N          + QL  LW+   
Sbjct: 247 MAPQTLEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQYAGKRQLAELWEEKL 306

Query: 316 RI--VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
            +   L  +    G       ++L   H   G+ V         DP S         ++ 
Sbjct: 307 EVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNDPHSHASMLHGVQYDI 366

Query: 374 LIVESLPL---VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
           L +++L      D    +  ENR     D+++       + +  +  + L  +  + + +
Sbjct: 367 LEMQTLDRVLGPDAELYQNVENRRLFKRDDQSIRVKSCHSPLREV--ETLHDHLLELLSN 424

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
                 +  +        Y          K     +  +   +G   + P +     LL 
Sbjct: 425 HADLTPKDIVVMMPDVAAYAPYIDAVFSAKQGLHYIPYAIADRGAAQESPLINSFLNLLG 484

Query: 491 L------INHPAILQEQYQELADIRYDNNELQKLWSFL----FSDFVEQKYFLPEEIHQR 540
           +      +     + E    L   + D++ELQ +  +L          ++  L + +   
Sbjct: 485 INQSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRNEQSRLKQGVPAF 544

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                   + + +                 +  +     QAL     F  +  +  +I  
Sbjct: 545 EQNSWAFGIKRLILGYALSDDAPLYQDHLIVTGIEGQSAQALGKLLNFIEVLDETAQILA 604

Query: 601 -------QIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQ 634
                  ++A++T   +A  +        L E+   I  +E +
Sbjct: 605 LPQVGALRLAELTELLDAFYDTDEDEREQLQEIRDAIAALEQE 647


>gi|41945510|gb|AAH66061.1| Dctn1 protein [Mus musculus]
          Length = 1264

 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%)

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
                  L +L    +      +   +   +  DL              L ++    +  
Sbjct: 221 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 280

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                      L  E         ++E E       +   +LEI          D     
Sbjct: 281 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 340

Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Y  + + ++  +L    +           +     +  +  +Q L      + +L ++ S
Sbjct: 341 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELS 400

Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538
             E+ +        A L  +E  + L D   +  E +++L   +       +     + +
Sbjct: 401 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 460

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R  E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    
Sbjct: 461 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 520

Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
           ++   +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 521 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 578



 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 207 VRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 266

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 267 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 326

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 327 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 380

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 381 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 424



 Score = 37.2 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  +  +A + ++ +   Q          + ++   L R+
Sbjct: 199 EEEGLRAQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 258

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 259 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 313


>gi|71649638|ref|XP_813535.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70878427|gb|EAN91684.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1028

 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 73/222 (32%), Gaps = 20/222 (9%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + +  RL  L Q+   E     +  ++    R +    Q                  RE 
Sbjct: 389 RELAQRLAALVQRLENERQQERQNDREEEEKRGKMLTQQEEAAPGNGMETERAAARNREK 448

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L  L +  ++ +E     + +  +  E ++    + +   E+          +  E+ 
Sbjct: 449 --LEKLTS--SLEKEIVALRSQLETNKREGEEAVHRVKAALSEEHARNMAAFVSQ-EEQR 503

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-----------LSRQ 594
             E +++L R+++DA       E     + +  QQ     K+                 Q
Sbjct: 504 TRETIEKLQRELQDAQQHGIELERRREKLWEEVQQLKERLKQAHSDAETLSNKLIVAETQ 563

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE++  + +     E  +     S++  +  +  ++E+  A
Sbjct: 564 VEELQFSLQEARHATEGNEA----SLVCALKARKKELETTSA 601



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 30/288 (10%), Positives = 83/288 (28%), Gaps = 28/288 (9%)

Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR--YYYSQAIRDRLQQLFQK 438
                +  E E +     + + ++E  +      +++   +   YY Q +      +  +
Sbjct: 160 HNKEEYIEELEQQVRRLSEAKFQIEQQVLAYQEKVRESHKKTVEYYEQKMETLQHGISSE 219

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
              +     +  ++    ++ +   + L +        +    L    +  TL +     
Sbjct: 220 KALKEEFAEKLSQREKDCQELQSEVRELREQVKKFDDETTTIKLLHGEMKKTLADREEEC 279

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQ---------KYFLPEEIHQRLCERGFGEL 549
            E+ +++         LQ+L   L      +         +          +       L
Sbjct: 280 LEKRRQIES-------LQELHDALLERVEREKQNKDKTPMESVPIAHSDAHVSSHVASGL 332

Query: 550 L------KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK----EEIE 599
           +       +L R+V                +     +   +++       Q      E+ 
Sbjct: 333 VVGDSSVAELRRRVEALEEEKVLMLREKEQMTALLLEERRIHRVTVKEREQILSHDRELA 392

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
           +++A +  + E E+     +   E   +   +  QE    G G  + R
Sbjct: 393 QRLAALVQRLENERQQERQNDREEEEKRGKMLTQQEEAAPGNGMETER 440


>gi|294101185|ref|YP_003553043.1| ATP-dependent chaperone ClpB [Aminobacterium colombiense DSM 12261]
 gi|293616165|gb|ADE56319.1| ATP-dependent chaperone ClpB [Aminobacterium colombiense DSM 12261]
          Length = 874

 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 74/208 (35%), Gaps = 10/208 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++K I + +   R ++     +     +  +++    + ++     +R+ AL+   +   
Sbjct: 324 YRKRIEKDAALARRFQPVLVEQPDVEDTISILRGLKERLEVHHGVRIRDNALVGAAVLSN 383

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL--LKQL 553
             + +++     I   +     + + + S   E      + +   + E    +      L
Sbjct: 384 RYITDRFLPDKAIDLVDEACAMIRTEIDSLPAELDAASRKVMQLEIEEAALKKEKDAASL 443

Query: 554 DRQ-VRDAGLWSATTEANIVDVRQGYQQALALYKRF--RLLSRQKEEIEKQIAQVTAKGE 610
           +R  V    L  A  EA+ +  +   ++ +    R     +   K EIEK       + +
Sbjct: 444 ERLSVLQKELQEAREEADALRAQYESEKEVISKVRKMREEIDAVKREIEK----AEREYD 499

Query: 611 AEKTAIL-ISILHEVHIQIHQIESQEAM 637
             K A L    L E+  Q+ + E   A 
Sbjct: 500 LNKAAELKHGRLPELQQQLKKEEGAHAA 527


>gi|290962751|ref|YP_003493933.1| chaperone [Streptomyces scabiei 87.22]
 gi|260652277|emb|CBG75410.1| chaperone [Streptomyces scabiei 87.22]
          Length = 879

 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 71/214 (33%), Gaps = 16/214 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++K+I + +   R +++          +  +++    + ++     +++ AL+    ++H
Sbjct: 324 YRKHIEKDAALERRFQQVLVEEPSVEDTISILRGLRERLEIFHGVKIQDTALVSAATLSH 383

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +    +L + + S   E            + E    +      
Sbjct: 384 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDEITRRVTRLEIEEAALSKETD--- 439

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------AQVTA 607
                  L     E   +      + A   ++  R   R+ +E+ +++        +   
Sbjct: 440 -PASKTRLEELRRELADLRGEADAKHAQ--WEAERQAIRRVQELRQELEQVRHEAEEAER 496

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEG 640
             +  + A L    L +V  ++   E Q A  +G
Sbjct: 497 AYDLNRAAELRYGRLQDVERRLKSEEEQLAAKQG 530


>gi|1572480|gb|AAB09048.1| nonmuscle myosin-II heavy chain [Drosophila melanogaster]
          Length = 2017

 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D +     AA  +   +   L        +     ED     +       + L       
Sbjct: 1650 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1709

Query: 382  VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                  +  ++          AE+    ++  +  + ++        + + +     K  
Sbjct: 1710 AAKEELQALSKEADGKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1769

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                   R   + A   ++    Q   +  L +   S+K  L+   L   L N  +  Q+
Sbjct: 1770 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1826

Query: 501  QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                 A +   N EL+   + +           +         + ++L   G   LL+Q 
Sbjct: 1827 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1886

Query: 554  DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610
              +  D  +   T         V Q  +Q   L  R +LL R  +E E+++  + T K +
Sbjct: 1887 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1946

Query: 611  AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648
             ++    +    E ++ +I+ ++++     G G  S RL
Sbjct: 1947 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 1985


>gi|73980483|ref|XP_866205.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 5 [Canis
           familiaris]
          Length = 1261

 Score = 44.9 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421



 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310


>gi|220933841|ref|YP_002512740.1| response regulator receiver [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995151|gb|ACL71753.1| response regulator receiver [Thioalkalivibrio sp. HL-EbGR7]
          Length = 620

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 87/253 (34%), Gaps = 15/253 (5%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
           TE        +   +   ++     +++ +     ++     L    Q+   E +     
Sbjct: 227 TELILRQQSVDEKRVSERIRELEAQLQESQAARQSAEEAAGGLTAQLQRIEQESTARTSA 286

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
            +           S R   + L + +     +   A  L + +          +   ++ 
Sbjct: 287 LESELEGSRAALQSARDELARLGEERQRLDEAAARAQTLESQLQ---------EARGELS 337

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               EL ++ + L +   +++        ++    G  + L  L   + +     A  E 
Sbjct: 338 SHGEELAEVRAQLQAALDQRQALEARLSGEQDDRMGLEDRLDSLQESLAEREQLLAEREE 397

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV-TAKGEAEKTAILISILH--EVHI 626
            +V VR   ++A  L  R     +  E +E+Q  +      + E T  +++ L     H 
Sbjct: 398 GLV-VRD--REANQLRDRALRAEQALERLEEQAREAVEQDADEEDTQAMLTALRTRAEHA 454

Query: 627 QIHQIESQEAMIE 639
           +++Q++ ++ ++E
Sbjct: 455 ELNQLQLEDELVE 467



 Score = 38.3 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 70/203 (34%), Gaps = 13/203 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            Q+ RD L +L ++         R     ++ ++ +G      +  L + +   + +L +
Sbjct: 298 LQSARDELARLGEERQRLDEAAARAQTLESQLQEARGELSSHGE-ELAEVRAQLQAALDQ 356

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKL--WSFLFSDFVEQKYFLPEEIHQRLC 542
              L        +  EQ   +      ++  + L     L ++  E    + +    +L 
Sbjct: 357 RQALEA-----RLSGEQDDRMGLEDRLDSLQESLAEREQLLAEREEG-LVVRDREANQLR 410

Query: 543 ERGF--GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +R     + L++L+ Q R+A    A  E     +     +A         L  +  E+  
Sbjct: 411 DRALRAEQALERLEEQAREAVEQDADEEDTQAMLTALRTRAEHAELNQLQLEDELVELAA 470

Query: 601 QIAQVTAKGEAEKTA--ILISIL 621
           +  +     EA +     L+  L
Sbjct: 471 KQERSEQAREAAERELRSLMQEL 493


>gi|160881874|ref|YP_001560842.1| replicative DNA helicase [Clostridium phytofermentans ISDg]
 gi|160430540|gb|ABX44103.1| replicative DNA helicase [Clostridium phytofermentans ISDg]
          Length = 442

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 30/81 (37%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K+    +  E +++ ++I     +    + L    +  ++   L+  +   F E K   
Sbjct: 7   KKIQPHSAEAEQSVIGSMIMDRDAIITASEILNAEDFYQHQYGVLYDAMIELFQEGKPVD 66

Query: 534 PEEIHQRLCERGFGELLKQLD 554
              +  +L E+     L  L+
Sbjct: 67  LITLQSKLKEKEVPPELCSLE 87


>gi|80474654|gb|AAI08379.1| Cgn protein [Mus musculus]
          Length = 703

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 90/255 (35%), Gaps = 10/255 (3%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           +E         +     +  ++     +++ KL     + +R  L+   ++   +     
Sbjct: 386 KEKAEECHRLQELLERRKGEVQQSSKELQNMKLLLGQEEGLRHGLEAQVKELQLKLKHSQ 445

Query: 448 RY-WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
                K +  +D     + L +    K ++ ++  LRE  L          +    QE+ 
Sbjct: 446 SPDSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALKGALKEEVASHDQEVE 505

Query: 507 DIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +R     + ++L   +     +      E   ++       EL ++L+    + G W +
Sbjct: 506 HVRLQYQRDTEQLRRSMQDAAQDHAALEAE---RQKMSSLVRELQRELEETSEETGHWQS 562

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEE----IEKQIAQVTAK-GEAEKTAILISI 620
             + N  ++R   Q+ L L      +  +  E    +++ + Q  A   +  +   L   
Sbjct: 563 MFQKNKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRDLEQARASTRDTHQVEELKKE 622

Query: 621 LHEVHIQIHQIESQE 635
           L     ++ ++++++
Sbjct: 623 LRRTQGELKELQAEQ 637


>gi|3941223|gb|AAC82221.1| myosin heavy chain [Schistosoma japonicum]
          Length = 528

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 89/244 (36%), Gaps = 22/244 (9%)

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
           +R ++E  +K     + D++ +      ++ ++    ++   +        +K  + +  
Sbjct: 194 QRGDMEQRIKELEERLADEEDQAANLSEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 253

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
           K    R +Q+ + +   +     ++   L          +   + L       N L KL 
Sbjct: 254 KDNQIRTLQAEMAQQDETIGKLNKDKKNLE------EQNKRTQEALQAEEDKVNHLNKLK 307

Query: 520 SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568
           + L S   E +             E+  ++L    +   E +  L+R  RD        E
Sbjct: 308 AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGVLKATQETVDDLERVKRDLEEQLRRKE 367

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI--LHEVHI 626
           A I  +   ++    L  +   L R+ +E++ +I ++    EAE+ A   +     ++  
Sbjct: 368 AEISGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 424

Query: 627 QIHQ 630
           ++ +
Sbjct: 425 ELEE 428


>gi|326793269|ref|YP_004311090.1| maltose O-acetyltransferase [Clostridium lentocellum DSM 5427]
 gi|326544033|gb|ADZ85892.1| Maltose O-acetyltransferase [Clostridium lentocellum DSM 5427]
          Length = 721

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 75/214 (35%), Gaps = 4/214 (1%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            Q   +RL+Q  ++         +  ++  R R +   ++RL Q +    +L ++    E
Sbjct: 178 IQEEAERLRQEAEEAEEAER-LRQEAEEAERLRQEAEEAERLRQEAEEAERLRQEAEEAE 236

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD-FVEQKYFLPEEIHQRLCE 543
              L         L+++ +E   +R +  E ++L         + Q+    E + Q   E
Sbjct: 237 R--LRQEAEEAERLRQEAEEAERLRQEAEEAERLRQEAEEAERLRQEAEEAERLRQEAEE 294

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   +   ++R     +        +  +  Q+A  L +      R ++E E+   
Sbjct: 295 AERLRQEAEEAERLRQEAEEAERLRQEAEEAERLRQEAERLRQEAEEAERLRQEAEEAER 354

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
                 E E+         E+  +    + ++++
Sbjct: 355 LRQEAEETERLIQEAEKAREILQEEDAKQKRKSI 388


>gi|320544370|ref|NP_001189009.1| zipper, isoform F [Drosophila melanogaster]
 gi|318068695|gb|ADV37254.1| zipper, isoform F [Drosophila melanogaster]
          Length = 1979

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D +     AA  +   +   L        +     ED     +       + L       
Sbjct: 1612 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1671

Query: 382  VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                  +  ++          AE+    ++  +  + ++        + + +     K  
Sbjct: 1672 AAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1731

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                   R   + A   ++    Q   +  L +   S+K  L+   L   L N  +  Q+
Sbjct: 1732 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1788

Query: 501  QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                 A +   N EL+   + +           +         + ++L   G   LL+Q 
Sbjct: 1789 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1848

Query: 554  DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610
              +  D  +   T         V Q  +Q   L  R +LL R  +E E+++  + T K +
Sbjct: 1849 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1908

Query: 611  AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648
             ++    +    E ++ +I+ ++++     G G  S RL
Sbjct: 1909 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 1947


>gi|296482742|gb|DAA24857.1| dynactin 1 [Bos taurus]
          Length = 1239

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 106/356 (29%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 203 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEAEVLRERVEELTTDLEILKAEIEEKGSDGAASSYQ 322

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E  +        A L  +E  + L D   D  E ++KL   +       +     + + R
Sbjct: 383 ERTIDELKEQVDAALGAEEMVETLTDRNLDLEEKVRKLKETVGDLEAINEMNDELQENAR 442

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     QVRDA       +  + D +Q  ++   L    + ++R     ++
Sbjct: 443 ETELELREQLDMAGAQVRDAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRALTNQQE 502

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558



 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 66/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSF--LFSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L     +  + VE+     E + 
Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEAEVLRERVEELTTDLEILK 306

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +     + E+  Q+      E M+E
Sbjct: 361 KNQELEVVRQQRERLQEELSQAERTIDELKEQVDAALGAEEMVE 404


>gi|296223520|ref|XP_002757645.1| PREDICTED: dynactin subunit 1 isoform 3 [Callithrix jacchus]
          Length = 1253

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421



 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310


>gi|296223518|ref|XP_002757644.1| PREDICTED: dynactin subunit 1 isoform 2 [Callithrix jacchus]
          Length = 1236

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 203 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 322

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 383 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 442

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 443 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 502

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 306

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 361 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 404



 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 179 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 238

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 239 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 293


>gi|240080354|ref|ZP_04724897.1| replicative DNA helicase [Neisseria gonorrhoeae FA19]
          Length = 461

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 14/178 (7%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                 +    L       E ++L   ++ +PA        ++   +  +E + ++  + 
Sbjct: 2   PPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDGIADVVSGEDFYRHEHRLIFRSIA 60

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               E +      + + L         ++L+       L +           + Y + + 
Sbjct: 61  KLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV- 113

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
              R R + RQ  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 114 ---RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQGF 166


>gi|237708289|ref|ZP_04538770.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229457842|gb|EEO63563.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 717

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 48/376 (12%), Positives = 98/376 (26%), Gaps = 26/376 (6%)

Query: 9   KDLLIHI-PISNLIGQYVDWD-RRKTNAVKGDYWACCPFHDEKTPSFHCNDSK--GFY-- 62
           +++L       ++   Y+    R   N          P + +   S +    +  G Y  
Sbjct: 5   EEILARTSNGLDVFRHYLPVKWRVGRNF-------LNPLYADSKASCNVYYDRRSGTYRM 57

Query: 63  YCFSCH-VKGDHLSFLSALLGCS------FIESVQRLAAIAGVPLPVVDPKIEKKEKIQT 115
             F      GD    ++ L G        F+E +  +     + L    P+         
Sbjct: 58  KDFGNGDYSGDCFFLVAKLKGLDCRNAADFVEVLHTIDRELCLGLEDDSPEDTAVPDGGC 117

Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
             +RL+  A +      ++     +    +  G      E     +             +
Sbjct: 118 RTLRLVPGAREHGTRENRSGEGVSVRANGNGTGKPDGYTEEAAAPFDCPEP-KPYRTTEK 176

Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235
                E        I  +                 R   G+   F            Y  
Sbjct: 177 PFTDAELAYWGASGITEELLHRYGAVSLAEYRGETRE--GKSFGFSST--PAEPMFGYKG 232

Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295
                ++     +   +G           +   +    + L  G  DVL+L   G   + 
Sbjct: 233 KWGVKVYRPMSEVRFVYGGHTGDNYCFGLEQLPSKGDLLFLTGGEKDVLTLAAHGFHAIC 292

Query: 296 SSLGTA-LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
            +  T+ +    +R L      IVL +D D  GL  + K    +  + +    +      
Sbjct: 293 FNSETSVIPAKTVRKLVYRFKHIVLLYDTDKTGLECSEKHRAQLSEYGVKRLVLPLPGTK 352

Query: 355 RGEDPDSFIRCYGKTA 370
             +D   + +      
Sbjct: 353 AEKDVTDYFKAGHTRE 368


>gi|145298233|ref|YP_001141074.1| chromosome segregation protein SMC [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851005|gb|ABO89326.1| chromosome segregation protein SMC [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 1124

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 78/239 (32%), Gaps = 19/239 (7%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            +    +   +    +   + +  +  +    ++    + +     +     K    EA 
Sbjct: 654 QLHSAFELSQRTVREQEQQWQQLREAWSLREGKRQERLQRLGQLGEELTRLDKEQADEAQ 713

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR------ 540
            L   +    + +E+  EL +      E  +L          ++      + +       
Sbjct: 714 RLAAALQQLELDEERLGELQEQGEPLTESLQLAQE--RVTHAERAVEEARLRREQQQASC 771

Query: 541 ----LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS---- 592
               L ++   +L+   ++++   GL  A  +       Q     L   +    L     
Sbjct: 772 QRWQLEQQNQSQLISLREQELARLGLELAELKEPGATPGQDLSPLLVEQRNLEALQLACH 831

Query: 593 RQKEEIEKQIAQVTAKGEAE--KTAILISILHEVHIQIHQ-IESQEAMIEGFGKMSGRL 648
           ++  E+E+Q+ ++      +  +   L   L  + ++  + +  ++ + E F ++  RL
Sbjct: 832 QRLAELERQLTELEQARSVDHKQLLTLQEKLATLRLERERNLTRRQGLHEQFEELGVRL 890


>gi|62471820|ref|NP_001014553.1| zipper, isoform C [Drosophila melanogaster]
 gi|320544368|ref|NP_001189008.1| zipper, isoform E [Drosophila melanogaster]
 gi|320544372|ref|NP_001189010.1| zipper, isoform G [Drosophila melanogaster]
 gi|61678343|gb|AAX52688.1| zipper, isoform C [Drosophila melanogaster]
 gi|318068694|gb|ADV37253.1| zipper, isoform E [Drosophila melanogaster]
 gi|318068696|gb|ADV37255.1| zipper, isoform G [Drosophila melanogaster]
          Length = 1971

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D +     AA  +   +   L        +     ED     +       + L       
Sbjct: 1604 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1663

Query: 382  VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                  +  ++          AE+    ++  +  + ++        + + +     K  
Sbjct: 1664 AAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1723

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                   R   + A   ++    Q   +  L +   S+K  L+   L   L N  +  Q+
Sbjct: 1724 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1780

Query: 501  QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                 A +   N EL+   + +           +         + ++L   G   LL+Q 
Sbjct: 1781 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1840

Query: 554  DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610
              +  D  +   T         V Q  +Q   L  R +LL R  +E E+++  + T K +
Sbjct: 1841 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1900

Query: 611  AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648
             ++    +    E ++ +I+ ++++     G G  S RL
Sbjct: 1901 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 1939


>gi|223932182|ref|ZP_03624186.1| conserved hypothetical protein [Streptococcus suis 89/1591]
 gi|223899163|gb|EEF65520.1| conserved hypothetical protein [Streptococcus suis 89/1591]
          Length = 358

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          P HD    SF        +  FS  ++GD + F+  + G +F E+V  L
Sbjct: 34 PDHD----SFRIFADTNTFKWFSRDIQGDVIDFVQLVAGVTFKEAVSYL 78


>gi|256829606|ref|YP_003158334.1| replicative DNA helicase [Desulfomicrobium baculatum DSM 4028]
 gi|256578782|gb|ACU89918.1| replicative DNA helicase [Desulfomicrobium baculatum DSM 4028]
          Length = 481

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/201 (9%), Positives = 55/201 (27%), Gaps = 20/201 (9%)

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
           +       + +    + Q   + +   S L++ ++    +  E A+L  +     I    
Sbjct: 2   QPKKPQSKFGQRLGTKIQPEEALQKASSDLLR-RVPPHNTEAEQAVLGGVFLRNDIFHTL 60

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLK 551
              + D  + +   + ++      +  ++      + + L  +G             L +
Sbjct: 61  VDTINDEDFYSPVHRIIYQAFQELYRRREPVDLVTVAEYLQTKGQLDEVGGTVYLASLAE 120

Query: 552 QLDRQVRDAGLWSATTEAN-----IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            +              + +     I    +         ++   L  Q E+    IA+  
Sbjct: 121 SVASASNAVFHAQIVRDKSVRRRLIQTSSEILTSCFEAGEQTESLLDQAEQQIFSIAESK 180

Query: 607 AK----GEAEKTAILISILHE 623
            K       +    +   L  
Sbjct: 181 GKPVFMSSKDLVQRVFEQLEA 201


>gi|253699226|ref|YP_003020415.1| ATP-dependent chaperone ClpB [Geobacter sp. M21]
 gi|251774076|gb|ACT16657.1| ATP-dependent chaperone ClpB [Geobacter sp. M21]
          Length = 862

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 65/190 (34%), Gaps = 6/190 (3%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++K+I + +   R +++          +  +++    K +   K  +++ A++       
Sbjct: 320 YRKHIEKDAALERRFQQVFAGEPSVEETISILRGLKEKYENYHKIRIKDGAIIAAATLSD 379

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S   E        I   +  +        L  
Sbjct: 380 RYITDRFLPDKAIDLIDEAASRLRIEIDSKPTEIDEIDRRIIQLEIERQAM------LRE 433

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           Q           E  +  +R    +    +KR   L +   E++++  + T + +  +  
Sbjct: 434 QDTKVLDRLKKLEEELDGLRAQSAKLNEHWKRETTLLKDLGELKQRKEEKTEEAKRAERD 493

Query: 616 ILISILHEVH 625
            L++   E+ 
Sbjct: 494 GLLARTAEIR 503


>gi|73980481|ref|XP_866193.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 4 [Canis
           familiaris]
 gi|73980511|ref|XP_866403.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 17 [Canis
           familiaris]
          Length = 1256

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421



 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310


>gi|73980505|ref|XP_866367.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 14 [Canis
           familiaris]
          Length = 1249

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 213 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 272

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 273 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 332

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 333 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 392

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 393 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 452

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 453 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 512

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 513 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 568



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 197 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 256

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 257 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 316

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 317 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 370

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 371 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 414



 Score = 37.6 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 189 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 248

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 249 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 303


>gi|34556788|ref|NP_906603.1| replicative DNA helicase [Wolinella succinogenes DSM 1740]
 gi|34482503|emb|CAE09503.1| REPLICATIVE DNA HELICASE EC 3.6.1 [Wolinella succinogenes]
          Length = 473

 Score = 44.9 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 52/158 (32%), Gaps = 14/158 (8%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E ++L +++  P+  +E   ++    +     + ++  L            E I ++   
Sbjct: 9   ERSVLSSILFDPSRFEEISTKIDSKDFSYLPHRHIFEALKELHRLDLPLDEEFIVKKETP 68

Query: 544 R---GFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ--KE 596
                  ELL  L  +         +   + +I          +  Y +   L  +   +
Sbjct: 69  ERPIDREELLYILGTNPISSIEAYVNEIKDRSIKRELHRLANTIREYSQKEELESEQILD 128

Query: 597 EIEKQIAQVTAKGE-------AEKTAILISILHEVHIQ 627
            +E ++ +++   E        E T   +  + ++  +
Sbjct: 129 HLESELYKISQDNENRDFKEAKEVTLATLEHIKKMKER 166


>gi|313815792|gb|EFS53506.1| DivIVA domain protein [Propionibacterium acnes HL059PA1]
          Length = 362

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 3/148 (2%)

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              I     + +       +  +N  L+     L       +    +++           
Sbjct: 23  YRAIEVDDFVDKVEAAFMTLTDENERLKAQVEAL-RSGEPGEQRPDQDLLN--ENEHLRA 79

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            +++L  Q     + S   +      +   ++A  L +    L  Q EE+ +   +    
Sbjct: 80  QVEELRSQQNGRSVNSGEVDRAKAAQQDAEKRARQLEQERVSLQSQIEELRQAARRPGQD 139

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636
            +  + A L S    +  Q+   +S  A
Sbjct: 140 IDPAEVARLRSENERLGAQLRDAQSLAA 167


>gi|297700425|ref|XP_002827242.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase
           TAO1-like [Pongo abelii]
          Length = 862

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 89/309 (28%), Gaps = 42/309 (13%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                   +   + +     +     K+     +    +         K+       +  
Sbjct: 459 QMQEHEQDSELREQMSGYKRMRRQHQKQLMTLENKLKAEMDEHRLRLDKDL------ETQ 512

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-RDQKGPSQRLMQSSLVKGKLSKK 479
           R  ++  +   +++       E        KK  +H + Q+         S  +    +K
Sbjct: 513 RNNFAAEMEKLIKKHQAAMEKEAKVMSNEEKKFQQHIQAQQKKELNSFLESQKREYKLRK 572

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             L+E+  L          +              + + L + L            + + +
Sbjct: 573 EQLKESKELQIKKQFQDTCK----------IQTRQYKALRNHLLE---TTPKSEHKAVLK 619

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-------- 591
           RL E    +L    ++         +T    + + ++   Q L +  +  L         
Sbjct: 620 RLKEEQTRKLAILAEQYDHSINEMLSTQALRLDEAQEAECQVLKMQLQQELELLNAYQSK 679

Query: 592 ---------SRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                     R+  E+E+++     +  +   E+   L +   E    + + +++E  IE
Sbjct: 680 IRMQAEAQHDRELRELEQRVSLRRALLEQKIEEEMLALQNERTERIRSLLERQARE--IE 737

Query: 640 GFGKMSGRL 648
            F   S RL
Sbjct: 738 AFDSESMRL 746


>gi|260913786|ref|ZP_05920261.1| hemagglutination activity domain protein PfhB [Pasteurella dagmatis
            ATCC 43325]
 gi|260632099|gb|EEX50275.1| hemagglutination activity domain protein PfhB [Pasteurella dagmatis
            ATCC 43325]
          Length = 2845

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 87/293 (29%), Gaps = 14/293 (4%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P +    Y    ++   +        ++++  E+    +  +    +          K+ 
Sbjct: 863  PVAITSLYASENWKAYQILRHVKHSPIFQKAMEHAF-GSNWQAMSYQAMSAKWKEFKKNP 921

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                YY           F              K N   +   G     + ++  + +++K
Sbjct: 922  TSFKYYPSEKARIFAGTFDASTKNIQNGELSEKGNFDSKLTIGKHSLTVPNADFRSEVNK 981

Query: 479  KPSLREA-----ALLLTLINHPAILQEQYQELADIR-YDNNELQKLWSFLFSDFVEQKYF 532
            +           + L  L++ P +  +   +L       + E Q +              
Sbjct: 982  EILELNKDGVDLSALSDLLDIPNLFIDNSVQLEKTTTEIDAEDQAILDKEPDYLNPNLLR 1041

Query: 533  LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK------ 586
              +E   +L      E   + D         +   E    D+++   +  +  K      
Sbjct: 1042 QNKEFLDKLLIDLNEEKYVKDDAYYDARRTNNERFENLPRDLQRRLHEEFSRRKEEQNAK 1101

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            R  LL + KEE E +  Q     + E+  +    + +   ++    ++E +I+
Sbjct: 1102 RLELLRKAKEEKEAKNQQRNDNYKVEEKRLENDKIIK-QKELEAQANEEKLIK 1153


>gi|224368962|ref|YP_002603126.1| DnaB [Desulfobacterium autotrophicum HRM2]
 gi|223691679|gb|ACN14962.1| DnaB [Desulfobacterium autotrophicum HRM2]
          Length = 456

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 29/100 (29%), Gaps = 6/100 (6%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           +       +  K+       E ALL  ++     L +    L    +     +++++ + 
Sbjct: 2   KETPHKDPLLTKVPPHDIDAEEALLSAVLIDNENLFDVIDLLKPEDFYKKAHKRIFNAIL 61

Query: 524 SDFVEQKYFLPEEIH------QRLCERGFGELLKQLDRQV 557
             F + +      +         L   G   LL  +    
Sbjct: 62  ELFSKDEPADLVTVATRLKEKDELESSGGAALLASIADSA 101


>gi|148274143|ref|YP_001223704.1| putative replicative DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|170783383|ref|YP_001711717.1| replicative DNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|147832073|emb|CAN03046.1| putative replicative DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|169157953|emb|CAQ03163.1| replicative DNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 459

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 53/162 (32%), Gaps = 10/162 (6%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
            +          +      L E + +  ++     + +  +++  I +   + + ++  +
Sbjct: 11  ERDERDKRAGHERTPPHDLLAEQSAIGGMLLSKDAVADAVEQVRAIDFYIPKHEIIFDAI 70

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            S +   +      +   L +      L +L R      L + T+          Y   +
Sbjct: 71  LSLYSHGEPTDVIAVTDELTK------LGELSRAGGADYLHTLTSVVPTAANAGFYASIV 124

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           A     + + R+  E   +I Q+    E E   ++ +   E+
Sbjct: 125 A----EKAVLRRLVEAGTRIVQMGYASEGEVVDLVNNAQAEI 162


>gi|110623253|emb|CAI94865.2| heat shock protein 101 [Triticum turgidum subsp. durum]
          Length = 917

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + I   +              + + +      
Sbjct: 394 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALE------KEKDKASKARLVE 447

Query: 567 TEANIVDVRQGYQQALALYKRFRL-------LSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
               + D+R   Q     Y++ +        L +++EE++  + +   + +  + A L  
Sbjct: 448 VRKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAERRMDLARVADLKY 507

Query: 619 SILHEVHIQIHQIESQ 634
             L E+   I ++E +
Sbjct: 508 GALQEIDAAIAKLEGE 523


>gi|121595260|ref|YP_987156.1| nuclease [Acidovorax sp. JS42]
 gi|120607340|gb|ABM43080.1| ParB domain protein nuclease [Acidovorax sp. JS42]
          Length = 683

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/292 (9%), Positives = 77/292 (26%), Gaps = 19/292 (6%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               + +     +     +         +       +  +  A L    +   +   D  
Sbjct: 100 HRIAKDWQVPCLQVADGTARTASLTENVQREAMHPADQFEAFAALVAEGRPIEDIAADFS 159

Query: 420 LRYYYSQ---AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +     Q    + +   +L   Y  +     +    +         +         +   
Sbjct: 160 VTPLVVQRRLKLANVSPRLMGDYRADAVSLDQLMALSITDDHAAQEAAFYDAPQWQRQPS 219

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           + +  L E  +      HP +                    +   LF++     Y     
Sbjct: 220 ALRERLTEREIDAY--RHPLVRFVGLDAYEQ------AGGGIRRDLFAEGDAGVYLTDAA 271

Query: 537 IHQRLCERGFGELLKQLDRQ-----VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
           + +RL +     +  ++  +         G+  A   A     R+  +      +R   L
Sbjct: 272 LLERLAQDKLAGIAAEVKAEGWAWADATPGVTHADLHAFQRAPRERREPNKREAQRIEKL 331

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
             + +E+ + +       + +K   L      +  Q+  +E     ++G+G 
Sbjct: 332 QAKLQEVAEAVDAAMDAEDEDKADALQEEGERLGEQLQALEDG---LQGYGA 380


>gi|212449|gb|AAA48985.1| nonmuscle myosin heavy chain [Gallus gallus]
          Length = 1976

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 103/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 876  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 935

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 936  ERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 995

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              L+E  L+         + E   +LA+       L KL     +    +E++    E+ 
Sbjct: 996  KFLKEKKLME------DRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKT 1049

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +      + 
Sbjct: 1050 RQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE---EELQAALARGDEEAVQK 1106

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1107 NNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTE 1154



 Score = 37.9 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 79/243 (32%), Gaps = 22/243 (9%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L   +++    ++++ + Y   +  ++RLQQ     + +           +K  
Sbjct: 1391 EENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ 1450

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1451 KKFDQMLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1505

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +                    + +L++  R            + ++
Sbjct: 1506 NKQLRADMEDLMSSKDDVGKN--------------VHELEKSKRTLEQQVEEMRTQLEEL 1551

Query: 575  RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                Q       R  +  +  +   ++  Q   +   EK  +L+  + E+  ++     Q
Sbjct: 1552 EDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQ 1611

Query: 635  EAM 637
             A+
Sbjct: 1612 RAL 1614


>gi|324993278|gb|EGC25198.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis SK405]
 gi|324995419|gb|EGC27331.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis SK678]
 gi|327461549|gb|EGF07880.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis SK1]
 gi|327489403|gb|EGF21196.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis SK1058]
          Length = 641

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 541

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++   +     L       +    ++  ++   L +R   L  Q E+++ QI+
Sbjct: 542 KAEQEALRE---ETEQVDLDKPAPANDYQLQKENQKEQRRLARRLEQLEAQIEDLDSQIS 598

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
           Q+       +     S L E   QI Q+ +  +EAM+E
Sbjct: 599 QLQEAM---QATNDASELMESQQQIDQLTAAQEEAMLE 633


>gi|309362042|emb|CAP28691.2| hypothetical protein CBG_09100 [Caenorhabditis briggsae AF16]
          Length = 1182

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 94/272 (34%), Gaps = 4/272 (1%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
            + + E+         R +        +     +  +      +  ++ R        +R
Sbjct: 525 RRQLAEAEKARQAEIDRVSWGVFATGGNLNYFQQAAIYAEQERMAMERERELERIQQEER 584

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHR-DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            +++ +    E +      ++  R + +++  ++R+ Q      K       R+  +   
Sbjct: 585 KREMERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKQKILEEERQRKIKEQ 644

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           +     I +EQ +          E +        +   ++    E + Q+  ER   +L 
Sbjct: 645 MREMEKIRKEQEEAREIEMRRLEEERAREMERVREEEMERQQQIERLRQQEEERKRKKLE 704

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            + + + +         +    ++ +  Q  L   ++ ++L ++ EE +  I +   + +
Sbjct: 705 MEKEERKKALIEEERKRKVLEKELEERRQAILEEERKRKILEKEMEERQTAIYEEQQRRK 764

Query: 611 AEKT---AILISILHEVHIQIHQIESQEAMIE 639
           AE+       +    ++  Q+ ++  + + +E
Sbjct: 765 AEEERRKQKEMEERKQIQEQMRKVSEERSRLE 796


>gi|253755120|ref|YP_003028260.1| DNA primase [Streptococcus suis BM407]
 gi|251817584|emb|CAZ55331.1| DNA primase [Streptococcus suis BM407]
          Length = 358

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          P HD    SF        +  FS  ++GD + F+  + G +F E+V  L
Sbjct: 34 PDHD----SFRIFADTNTFKWFSRDIQGDVIDFVQLVAGVTFKEAVSYL 78


>gi|189460390|ref|ZP_03009175.1| hypothetical protein BACCOP_01029 [Bacteroides coprocola DSM 17136]
 gi|189432942|gb|EDV01927.1| hypothetical protein BACCOP_01029 [Bacteroides coprocola DSM 17136]
          Length = 862

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 75/272 (27%), Gaps = 41/272 (15%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + L  +DM              +    +   +     +I        
Sbjct: 220 RILRGDVPENLKNKQLFSLDMGALVAGAKYKGEFEERLKSVINEVTKSDGNI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      +++ P                      +   L   +             R+ +
Sbjct: 328 ERRFQTVMVDEPDTASSI---------------SILRGLKERYENHHQV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + D        +  I  + +    A  L      L  + +EIE+++ 
Sbjct: 366 EAIIAAVELSNRYITDR----FLPDKAIDLMDEA---AAKLRMERDSLPEELDEIERRLK 418

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           Q+  + EA K     + L +++ +I +++ QE
Sbjct: 419 QLEIEREAIKREKDEAKLAQLNKEIAELKEQE 450


>gi|197294447|ref|YP_001798988.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma
           australiense]
 gi|171853774|emb|CAM11706.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma
           australiense]
          Length = 427

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 52/160 (32%), Gaps = 27/160 (16%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E ALL TL+ +P  +      +    + N + + ++  +    ++ +      +   L 
Sbjct: 4   AERALLGTLLLNPEKMDAVINLVNTNNFSNPKHRCIFETMKQLKLQNREINYVTVGSVLD 63

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
              +   +  +D  +    +      A   +  + Y   +      R L    +++   +
Sbjct: 64  NNLYK--IGGIDYLIELVEM------APASEYLETYIDLIKENTLKRDLLGLIKQLPTAL 115

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           +         K+  + + L  V  Q          +EGF 
Sbjct: 116 S---------KSKNIHNYLQTVKNQ----------VEGFM 136


>gi|205696376|sp|A0JN62|CE120_BOVIN RecName: Full=Centrosomal protein of 120 kDa; Short=Cep120;
           AltName: Full=Coiled-coil domain-containing protein 100
          Length = 987

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 31/280 (11%), Positives = 90/280 (32%), Gaps = 13/280 (4%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 646 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 703

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++            ++    + ++  + + +Q S+ + K   
Sbjct: 704 AEYNILEGKLQKTLIDLEKREQQLAIAESELQRERRELKSERERNLQELQDSIRRAKEDC 763

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   +  L      LQ+Q  +  +      + + L         +Q       +
Sbjct: 764 VHQVELERLKMKQLEEDKHRLQQQLNDAEN------KYKTLEKEFHQFKDQQSSKPEIRL 817

Query: 538 HQRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
              +        EL ++L+   +    +       + ++ +  Q+      +   L +Q+
Sbjct: 818 QSEINLLTLEKVELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQ 875

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           EE+E+   +  A  E +        L ++  +++++  QE
Sbjct: 876 EELEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 915


>gi|114578183|ref|XP_001156304.1| PREDICTED: dynactin 1 isoform 8 [Pan troglodytes]
          Length = 1223

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421



 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310


>gi|114777957|ref|ZP_01452871.1| DnaB helicase [Mariprofundus ferrooxydans PV-1]
 gi|114551744|gb|EAU54296.1| DnaB helicase [Mariprofundus ferrooxydans PV-1]
          Length = 445

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/185 (10%), Positives = 52/185 (28%), Gaps = 21/185 (11%)

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E A+L  ++  P  L+     L    +       ++  +     + +      
Sbjct: 2   PPHAHDAERAVLGGVMLDPEALERLEGSLRPEHFYVGANSHIFHAILDLSTKGQPIDALT 61

Query: 537 IHQRLCER------GFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRF 588
           +   L +R      G    L +L   V  +       +       +R+       + +  
Sbjct: 62  VKDYLEQRDELAGSGGEAYLAELINAVPTSANVRHYADIVRERSVLRELLSACSKISRDV 121

Query: 589 -----RLLSRQKEEIEKQI-------AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                R ++   +  EK I        +           +++    E+  +  + ++   
Sbjct: 122 YDESGREVNEHLDLAEKNILAVAENFNRARPAFNK-MGELMVQSYKELEARYAEKKAVTG 180

Query: 637 MIEGF 641
           +  GF
Sbjct: 181 VSTGF 185


>gi|50842252|ref|YP_055479.1| putative immunogenic protein antigen 84 [Propionibacterium acnes
           KPA171202]
 gi|289426110|ref|ZP_06427856.1| DivIVA domain protein [Propionibacterium acnes SK187]
 gi|289426868|ref|ZP_06428594.1| DivIVA domain protein [Propionibacterium acnes J165]
 gi|50839854|gb|AAT82521.1| putative immunogenic protein antigen 84 [Propionibacterium acnes
           KPA171202]
 gi|289153275|gb|EFD01990.1| DivIVA domain protein [Propionibacterium acnes SK187]
 gi|289159957|gb|EFD08135.1| DivIVA domain protein [Propionibacterium acnes J165]
 gi|313764727|gb|EFS36091.1| DivIVA domain protein [Propionibacterium acnes HL013PA1]
 gi|313807253|gb|EFS45740.1| DivIVA domain protein [Propionibacterium acnes HL087PA2]
 gi|313813199|gb|EFS50913.1| DivIVA domain protein [Propionibacterium acnes HL025PA1]
 gi|313818299|gb|EFS56013.1| DivIVA domain protein [Propionibacterium acnes HL046PA2]
 gi|313820061|gb|EFS57775.1| DivIVA domain protein [Propionibacterium acnes HL036PA1]
 gi|313823130|gb|EFS60844.1| DivIVA domain protein [Propionibacterium acnes HL036PA2]
 gi|313827832|gb|EFS65546.1| DivIVA domain protein [Propionibacterium acnes HL063PA2]
 gi|314915218|gb|EFS79049.1| DivIVA domain protein [Propionibacterium acnes HL005PA4]
 gi|314918553|gb|EFS82384.1| DivIVA domain protein [Propionibacterium acnes HL050PA1]
 gi|314919816|gb|EFS83647.1| DivIVA domain protein [Propionibacterium acnes HL050PA3]
 gi|314925483|gb|EFS89314.1| DivIVA domain protein [Propionibacterium acnes HL036PA3]
 gi|314931831|gb|EFS95662.1| DivIVA domain protein [Propionibacterium acnes HL067PA1]
 gi|314955987|gb|EFT00385.1| DivIVA domain protein [Propionibacterium acnes HL027PA1]
 gi|314958382|gb|EFT02485.1| DivIVA domain protein [Propionibacterium acnes HL002PA1]
 gi|314960266|gb|EFT04368.1| DivIVA domain protein [Propionibacterium acnes HL002PA2]
 gi|314968090|gb|EFT12189.1| DivIVA domain protein [Propionibacterium acnes HL037PA1]
 gi|314978252|gb|EFT22346.1| DivIVA domain protein [Propionibacterium acnes HL072PA2]
 gi|314987716|gb|EFT31807.1| DivIVA domain protein [Propionibacterium acnes HL005PA2]
 gi|314990195|gb|EFT34286.1| DivIVA domain protein [Propionibacterium acnes HL005PA3]
 gi|315084582|gb|EFT56558.1| DivIVA domain protein [Propionibacterium acnes HL027PA2]
 gi|315085918|gb|EFT57894.1| DivIVA domain protein [Propionibacterium acnes HL002PA3]
 gi|315088664|gb|EFT60640.1| DivIVA domain protein [Propionibacterium acnes HL072PA1]
 gi|315098273|gb|EFT70249.1| DivIVA domain protein [Propionibacterium acnes HL059PA2]
 gi|315101036|gb|EFT73012.1| DivIVA domain protein [Propionibacterium acnes HL046PA1]
 gi|315107087|gb|EFT79063.1| DivIVA domain protein [Propionibacterium acnes HL030PA1]
 gi|315108228|gb|EFT80204.1| DivIVA domain protein [Propionibacterium acnes HL030PA2]
 gi|327330625|gb|EGE72371.1| putative immunogenic protein antigen 84 [Propionibacterium acnes
           HL097PA1]
 gi|327442823|gb|EGE89477.1| DivIVA domain protein [Propionibacterium acnes HL013PA2]
 gi|327451045|gb|EGE97699.1| DivIVA domain protein [Propionibacterium acnes HL087PA3]
 gi|327453600|gb|EGF00255.1| DivIVA domain protein [Propionibacterium acnes HL083PA2]
 gi|328753078|gb|EGF66694.1| DivIVA domain protein [Propionibacterium acnes HL087PA1]
 gi|328753733|gb|EGF67349.1| DivIVA domain protein [Propionibacterium acnes HL020PA1]
 gi|328759177|gb|EGF72793.1| DivIVA domain protein [Propionibacterium acnes HL025PA2]
 gi|332675182|gb|AEE71998.1| putative immunogenic protein antigen 84 [Propionibacterium acnes
           266]
          Length = 361

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 3/148 (2%)

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              I     + +       +  +N  L+     L       +    +++           
Sbjct: 23  YRAIEVDDFVDKVEAAFMTLTDENERLKAQVEAL-RSGEPGEQRPDQDLLN--ENEHLRA 79

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            +++L  Q     + S   +      +   ++A  L +    L  Q EE+ +   +    
Sbjct: 80  QVEELRSQQNGRSVNSGEVDRAKAAQQDAEKRARQLEQERVSLQSQIEELRQAARRPGQD 139

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636
            +  + A L S    +  Q+   +S  A
Sbjct: 140 IDPAEVARLRSENERLGAQLRDAQSLAA 167


>gi|315927297|gb|EFV06641.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 451

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 49/153 (32%), Gaps = 10/153 (6%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L + I           +++   +     Q ++  + +    ++      + +   
Sbjct: 3   LERAILSSCIMSEEAYASIAGDISPKDFSLKAHQDIFKAVIACSNNKEPISVSFLRKH-- 60

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           ++   ++L ++        L +   E +   V++       L        R   EI  +I
Sbjct: 61  KKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQLLSFAHLLPTRINEDRAVSEIADEI 120

Query: 603 --------AQVTAKGEAEKTAILISILHEVHIQ 627
                    +V ++   +   ++  +  E   Q
Sbjct: 121 GKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ 153


>gi|91202833|emb|CAJ72472.1| similar to structural maintenance of chromosome (smc) seggregation
           ATPase protein [Candidatus Kuenenia stuttgartiensis]
          Length = 1207

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 81/233 (34%), Gaps = 11/233 (4%)

Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
           E         I++   R    +   + L Q  +    +        K+    R +     
Sbjct: 755 EEESDEINGEIENTHEREILLRERLEVLNQRHEALKEQIEETSMLVKEKEVIRKEMQEEI 814

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWSFLF 523
             ++  L + +  K       +L  TL    A LQE  +++ DI  ++   Q K++    
Sbjct: 815 MSLKVMLAQKEEKKD------SLAETLNKLSADLQEMEEQVRDIADEHKNCQQKIFDAEI 868

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                +++    +  + + +     L  +++R    A     + E N  +     Q    
Sbjct: 869 EIKNTEQHIEALQSEKIVIDERTENLSAEIERNDYHAAELRTSLEGNQAEYGSVEQHLQE 928

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           L  +    + +   +E++I +        + + L S   E+  ++  ++ ++A
Sbjct: 929 LRFKENEYNIRITNLEERIREEYKL----EISELHSNREEIEQELSSLKEKQA 977



 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 75/210 (35%), Gaps = 15/210 (7%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
                   I + +            R     +  + +  L K     K    E  LL   
Sbjct: 133 FGSNAYSVIEQGNVDALLRANAHERRALFEEAAGISRFKLQKKAALSKLEHVEQNLLRI- 191

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGEL 549
                I++E  ++L  I+   ++ ++ +        + K  L  + ++ L +      E 
Sbjct: 192 ---GDIVEELQKQLRSIKVQASKARR-YQEYREQLKKLKVGLSLKNYRELGDNKASVSEQ 247

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           +KQ++ Q +       T +  I +V +  +Q   L  +   L  +K  +E QI++     
Sbjct: 248 IKQIEEQRQKVTTIIDTLKLQIDEVEEALEQ---LELQSAALQTEKMSLESQISK----- 299

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + +K       + E+  +  ++  Q+  +E
Sbjct: 300 DEDKIKYNTERIKELKTRRERLLEQQKTLE 329


>gi|54020645|ref|YP_116172.1| replicative DNA helicase [Mycoplasma hyopneumoniae 232]
 gi|53987818|gb|AAV28019.1| replicative DNA helicase [Mycoplasma hyopneumoniae 232]
          Length = 463

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 59/172 (34%), Gaps = 15/172 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            EA ++  L+ +P  +      L    +    L ++   + +   + K      + Q L 
Sbjct: 11  LEAFIISFLLANPEKVVNFIDILNPDDFSVRNLAEIVRAIKNVANQTKNPEVTLVLQELE 70

Query: 543 ERGFGELLK-------------QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
             G  + +               L  ++ +  L     +  + D+++    +        
Sbjct: 71  RTGKLDQIGGRNYIVNLYNSNFSLPSEITE-HLRIINEKKTLRDLKKIVDDSTKELNSGT 129

Query: 590 LLSRQK-EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             S +   EI ++I  +    + E    +  I  ++   + ++ + + +I+G
Sbjct: 130 KFSYEITTEILQKINLLNFNTKNETFIPIYEIAVQIFAYLTELRTSQNLIKG 181


>gi|57768826|ref|NP_001003522.1| TATA element modulatory factor [Danio rerio]
 gi|50417102|gb|AAH77134.1| TATA element modulatory factor 1 [Danio rerio]
          Length = 1136

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 83/237 (35%), Gaps = 30/237 (12%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            +    ++  ++ + E     +   +++    +    +R   + + K     K    E  
Sbjct: 581 ELIKEKEEQIRELLEEGEKLSKQQLQHSNIIKKLRVKERESDAQIAKQTKKLKEQEEELK 640

Query: 487 LLLTLI--------NHPA-------ILQEQYQELADIRYDNNELQK----LWSFLFSDFV 527
           LL  ++         H         +++ Q +EL+ ++  + ELQ+    L + L S + 
Sbjct: 641 LLQQVMDGKEEIEKQHRENIKKLNAVVERQEKELSKLQTSSEELQEKSRSLQAALDSSYK 700

Query: 528 EQKYFLPEEIHQRLCERGF---------GELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           E          +    +            EL   L++   D+ L        + D+R   
Sbjct: 701 ELAELHKANASKDSEAQELALSREVQAKEELSLALEKVQEDSRLQQEALANQVADLRVAL 760

Query: 579 QQALALY-KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           Q+A     K+   L  +  E++++I +       E +  + S    +  QI  +++ 
Sbjct: 761 QRAEQQQAKKEDYLREEISELQQRIQEAE-TRNQELSQSVTSATRPLLRQIENLQAT 816


>gi|146297588|ref|YP_001181359.1| hypothetical protein Csac_2596 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411164|gb|ABP68168.1| hypothetical protein Csac_2596 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 373

 Score = 44.9 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 92/304 (30%), Gaps = 42/304 (13%)

Query: 53  FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL----------AAI------- 95
            + N  K  ++C  C V G+ L   + L      E+ + L          A         
Sbjct: 48  LYINVYKNTFFCHKCGVGGNALQLYAWLSNMDTKEAYKELTQILTKGTKRARKAVAEPTV 107

Query: 96  -AGVPLPVVDPKI-EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHA 153
              + +   +    E+++K+  + I+L+++             D++   +L  RG+    
Sbjct: 108 NYNITVKSDNLAPVEQRDKVYREFIKLLDL-------------DEKHKEHLLLRGLTETF 154

Query: 154 IEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS 213
           I+              R+ + +    +   +E        +  +      +    P +  
Sbjct: 155 IKFKSYKSLNVRDERKRKEICKTLIEKGLSLEGVPGFFRHSDGSWDFINYDGFCIPAKDF 214

Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273
            G++     R + +  +     S +   F  G        A N++  +   +  +   +F
Sbjct: 215 EGRIQGLQVRIVKENST-----SGKYRWFSSGNVPTGTS-AKNFIHVTGSFNEEKCRRAF 268

Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK----LSPRIVLCFDGDDPGLR 329
           II      D+ S    G   +         +  + ++          + +  D D    +
Sbjct: 269 IIEGILKADICSYLMDGELFIGIPGIANSHDSAVEVVKNLGLKYEGEVYVVVDNDYYDKK 328

Query: 330 AAYK 333
               
Sbjct: 329 EVQD 332


>gi|327332201|gb|EGE73938.1| putative immunogenic protein antigen 84 [Propionibacterium acnes
           HL096PA3]
          Length = 361

 Score = 44.9 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 3/148 (2%)

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              I     + +       +  +N  L+     L       +    +++           
Sbjct: 23  YRAIEVDDFVDKVEAAFMTLTDENERLKAQVEAL-RSGEPGEQRPDQDLLN--ENEHLRA 79

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            +++L  Q     + S   +      +   ++A  L +    L  Q EE+ +   +    
Sbjct: 80  QVEELRSQQNGRSVNSGEVDRAKAAQQDAEKRARQLEQERVSLQSQIEELRQAARRPGQD 139

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636
            +  + A L S    +  Q+   +S  A
Sbjct: 140 IDPAEVARLRSENERLGAQLRDAQSLAA 167


>gi|296235207|ref|XP_002762807.1| PREDICTED: dystrophin [Callithrix jacchus]
          Length = 3682

 Score = 44.9 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 48/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 2526 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 2581

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 2582 WLEAKEEAEQVLGQARAKLESWKEGPYTIDAIQKKITETKQLAKDLHQWQINVDVANDLA 2641

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2642 LKLLRDYSADDTRKVHMITENINASWGSIQKRVSEREAALEETHRLLQQF-PLDLEKFLA 2700

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       R+ 
Sbjct: 2701 WLTEAETTANVLQDATHKERLLEDSKGVKELMKQWQDLQGEIEAHTDIYHNLDENSQRIL 2760

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2761 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDRWKRLHLSLQELLVWLQL 2820

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2821 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 2879

Query: 550  -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 2880 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDEALERLQELQEA 2939

Query: 609  GEA 611
             + 
Sbjct: 2940 TDE 2942



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 76/236 (32%), Gaps = 32/236 (13%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L +  +K   +     +  K        K  S R   ++L+  +      L E  +   
Sbjct: 1694 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 1753

Query: 491  -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                  I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 1754 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 1813

Query: 546  ---FGELLKQLDRQVRDAGLWSATTEANIVD------------------------VRQGY 578
                 ELL++ D   +         E  I                            +  
Sbjct: 1814 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKVRIFGLRSQRRKKALEIS 1873

Query: 579  QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             Q     ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1874 HQWYQYKRQADDLLKCLDDIEKKLASLPEPRDERKVKEIDRELQKKKEELNAVRRQ 1929


>gi|295130340|ref|YP_003581003.1| DivIVA domain protein [Propionibacterium acnes SK137]
 gi|291375113|gb|ADD98967.1| DivIVA domain protein [Propionibacterium acnes SK137]
 gi|313772523|gb|EFS38489.1| DivIVA domain protein [Propionibacterium acnes HL074PA1]
 gi|313809759|gb|EFS47480.1| DivIVA domain protein [Propionibacterium acnes HL083PA1]
 gi|313830668|gb|EFS68382.1| DivIVA domain protein [Propionibacterium acnes HL007PA1]
 gi|313833888|gb|EFS71602.1| DivIVA domain protein [Propionibacterium acnes HL056PA1]
 gi|314973670|gb|EFT17766.1| DivIVA domain protein [Propionibacterium acnes HL053PA1]
 gi|314976263|gb|EFT20358.1| DivIVA domain protein [Propionibacterium acnes HL045PA1]
 gi|314983528|gb|EFT27620.1| DivIVA domain protein [Propionibacterium acnes HL005PA1]
 gi|315096290|gb|EFT68266.1| DivIVA domain protein [Propionibacterium acnes HL038PA1]
 gi|327325926|gb|EGE67716.1| putative immunogenic protein antigen 84 [Propionibacterium acnes
           HL096PA2]
 gi|327446194|gb|EGE92848.1| DivIVA domain protein [Propionibacterium acnes HL043PA2]
 gi|327447823|gb|EGE94477.1| DivIVA domain protein [Propionibacterium acnes HL043PA1]
 gi|328760577|gb|EGF74145.1| putative immunogenic protein antigen 84 [Propionibacterium acnes
           HL099PA1]
          Length = 361

 Score = 44.9 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 3/148 (2%)

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              I     + +       +  +N  L+     L       +    +++           
Sbjct: 23  YRAIEVDDFVDKVEAAFMTLTDENERLKAQVEAL-RSGEPGEQRPDQDLLN--ENEHLRA 79

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            +++L  Q     + S   +      +   ++A  L +    L  Q EE+ +   +    
Sbjct: 80  QVEELRSQQNGRSVNSGEVDRAKAAQQDAEKRARQLEQERVSLQSQIEELRQAARRPGQD 139

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636
            +  + A L S    +  Q+   +S  A
Sbjct: 140 IDPAEVARLRSENERLGAQLRDAQSLAA 167


>gi|164425771|ref|XP_001728267.1| hypothetical protein NCU10836 [Neurospora crassa OR74A]
 gi|157071058|gb|EDO65176.1| predicted protein [Neurospora crassa OR74A]
          Length = 940

 Score = 44.9 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 56/148 (37%), Gaps = 8/148 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--CERGFGELLKQL 553
            ++ + + +   ++  N  L      +  ++   +    ++  +RL   + G  ++++  
Sbjct: 138 KLVADVFGQFIVLKEKNERLSISHREVLDEYHRYRS-ELDDWKKRLDKEKEGLEDVIQSK 196

Query: 554 DRQVRDAGLWSATTEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            ++V       A  + ++ D               L +      ++ +E++K   +  A 
Sbjct: 197 VQEVLHLHAMRAKLQGDLEDSAKRAAMAAENAERELVRLKEDKEKELDELKKDKERELAA 256

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636
            + +K   L ++  +   Q+ ++   +A
Sbjct: 257 LKEDKEKELAALKEDQEQQLTKLREDQA 284


>gi|149036515|gb|EDL91133.1| dynactin 1, isoform CRA_b [Rattus norvegicus]
          Length = 1276

 Score = 44.9 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%)

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
                  L +L    +      +   +   +  DL              L ++    +  
Sbjct: 238 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 297

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                      L  E         ++E E       +   +LEI          D     
Sbjct: 298 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 357

Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Y  + + ++  +L    +           +     +  +  +Q L      + +L ++ S
Sbjct: 358 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELS 417

Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538
             E+ +        A L  +E  + L D   +  E +++L   +       +     + +
Sbjct: 418 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 477

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R  E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    
Sbjct: 478 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 537

Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
           ++   +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 538 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 224 VRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441


>gi|311260123|ref|XP_003128353.1| PREDICTED: coiled-coil alpha-helical rod protein 1-like [Sus
           scrofa]
          Length = 844

 Score = 44.9 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/272 (9%), Positives = 80/272 (29%), Gaps = 17/272 (6%)

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPD--ERAELEIHLKNCINHIKDQKLRYYYSQ 426
               KL+  ++       +         T      +    +    ++ I+    R     
Sbjct: 492 EEQLKLVANAVSSFQAWLQSTMAEVERATARLPSLSARLSYAVRKVHTIRGLMARKL--- 548

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
           A+    Q+                +            Q        +   +++    E  
Sbjct: 549 ALAQLRQESCPPPPPATEMNLELEQLREERNRLDAELQLSAHIIQQEVGRAREQGEVERQ 608

Query: 487 LLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            L  +       LQ   + LA +       ++          ++       + Q L ++ 
Sbjct: 609 KLSEVAQQLEQELQHTQESLASLGLQLEAARQ--------GQQESTAEAAGLRQELTQQQ 660

Query: 546 F---GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                 L +++           + +E  + + R+ + +A+   ++ +  + +++E  +++
Sbjct: 661 EIYGQALQEKVAEVETRLREQLSESERRLNEARREHTKAVVSLRQMQRKATREKERNQEL 720

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++  +   E+   L   L E+    + + + 
Sbjct: 721 RRLQEEARKEEGQRLTQRLKELERDKNLMLAT 752


>gi|149633353|ref|XP_001506575.1| PREDICTED: similar to restin [Ornithorhynchus anatinus]
          Length = 1264

 Score = 44.9 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 78/255 (30%), Gaps = 15/255 (5%)

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                D R          +   +D  LR      +R RL+        + S        +
Sbjct: 486 QRELEDTRVATVSEKSRIMELERDLALREKEVIELRRRLESSKPAGEVDASLSLLQEIGS 545

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
            + +     S    + + +K +        +  L   LI+   + +E     + + + N 
Sbjct: 546 LQEKLTTISSDHQHEITSLKERFGANEETHQKELKALLISTEKLRKENESLKSKLDHANK 605

Query: 514 ELQ---KLWSFLFSDFVEQKYFLPEEIHQRLC------ERGFGELLKQLDRQVRDAGLWS 564
           E      LW       +       EE+              F EL  Q+++   +     
Sbjct: 606 ENSDVIALWKSKLESAIASHQQAMEELKVSFSKGVGADSAEFAELKTQIEKLRLEYQSEM 665

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            T +      R  + Q +   K    L    EE E+ +    +K E  +       L E+
Sbjct: 666 ETFKLKRDSERSAHAQEIEALK--VKLKETIEEKERSLETFQSKLENAED----QHLVEM 719

Query: 625 HIQIHQIESQEAMIE 639
              +++++  E  ++
Sbjct: 720 EDTLNKLQEAEIKVK 734


>gi|149642611|ref|NP_001092404.1| dynactin subunit 1 [Bos taurus]
 gi|148745416|gb|AAI42510.1| DCTN1 protein [Bos taurus]
          Length = 1239

 Score = 44.9 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 106/356 (29%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 203 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEAEVLRERVEELTTDLEILKAEIEEKGSDGAASSYQ 322

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E  +        A L  +E  + L D   D  E ++KL   +       +     + + R
Sbjct: 383 ERTIDELKEQVDAALGAEEMVETLTDRNLDLEEKVRKLKETVGDLEAINEMNDELQENAR 442

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     QVRDA       +  + D +Q  ++   L    + ++R     ++
Sbjct: 443 ETELELREQLDMAGAQVRDAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRALTNQQE 502

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558



 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 66/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSF--LFSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L     +  + VE+     E + 
Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEAEVLRERVEELTTDLEILK 306

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +     + E+  Q+      E M+E
Sbjct: 361 KNQELEVVRQQRERLQEELSQAERTIDELKEQVDAALGAEEMVE 404


>gi|145532266|ref|XP_001451894.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419560|emb|CAK84497.1| unnamed protein product [Paramecium tetraurelia]
          Length = 912

 Score = 44.9 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 82/261 (31%), Gaps = 17/261 (6%)

Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
            ++       E       +     +  L++  N+  +Q L   Y   I D   +      
Sbjct: 160 YLNAEIVDLKEQLQQRETEFNRYRQQILRSTGNNNNNQDLIAQYLSTIDDLRSKNSSLSR 219

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                  +   +       K   +R   +     + ++               H  +++E
Sbjct: 220 QLRERDSKIQNQEYEIEQLKKQLERRNDNKQQIDQSNQNEE------------HARLIKE 267

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              +L  +     EL    +F+     E +     ++ + +  +     L+Q++      
Sbjct: 268 LSSKLQMLESKVQELDH-KAFVEQKKREDREKEIGKLKETVSTQEHQIQLQQIEIDNDKK 326

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
            +     E +           +  + +   L R +E  +++I +     E +K   L+  
Sbjct: 327 IIKYIQEETSKNQGGNNSASFIPHFNQE--LQRLQENTQREIRERNRLEEEKKQNELMRQ 384

Query: 620 -ILHEVHIQIHQIESQEAMIE 639
              +EV  ++ +   Q+A IE
Sbjct: 385 KEQNEVQRKVKEERDQQAKIE 405


>gi|73980509|ref|XP_866394.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 16 [Canis
           familiaris]
          Length = 1263

 Score = 44.9 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 227 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 286

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 287 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 346

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 347 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 406

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 407 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 466

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 467 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 526

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 527 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 582



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 211 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 270

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 271 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 330

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 331 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 384

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 385 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 428



 Score = 37.6 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 203 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 262

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 263 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 317


>gi|47210072|emb|CAF90125.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 894

 Score = 44.9 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 77/247 (31%), Gaps = 13/247 (5%)

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                ++     + D   +    Q  +D+L+   +K+        +   ++ +    +  
Sbjct: 60  RRNDQIRRLEAKLSDYAEQLRVMQRTKDKLELALEKHQDSSIKKLQEQNESHQVNRTRMA 119

Query: 463 SQRLMQSSLVKGKLSKKPSLRE-------AALLLTLINHPAILQEQYQELADIRYDNNEL 515
               +       +  +K ++ E       A +   +    A+ Q++        +   EL
Sbjct: 120 ESMAVALEKKDQEWMEKMAVVEKEKTALSAQIEEMMDQSLALFQKRDDLDELEGFQQQEL 179

Query: 516 QKLWSFLF----SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
            K+   L         ++     +E      +R   E+   L    +     S       
Sbjct: 180 AKVKHMLLKKEEQLSQQEHQLQQKEAALHSAKRNLSEVQGSLQVLKQRHEESSRLNAELE 239

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI--QIH 629
           ++  +          + R L RQ  +++  I Q++        + L S L  +       
Sbjct: 240 IEREELLLLKEESDSKVRSLERQCGDLQSAIQQLSEDFHKRTVSALESSLQALQSGHDSL 299

Query: 630 QIESQEA 636
           +++ Q+A
Sbjct: 300 RLQQQKA 306


>gi|85097119|ref|XP_960385.1| hypothetical protein NCU04826 [Neurospora crassa OR74A]
 gi|28921875|gb|EAA31149.1| predicted protein [Neurospora crassa OR74A]
          Length = 1422

 Score = 44.9 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 32/274 (11%), Positives = 84/274 (30%), Gaps = 14/274 (5%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++       +     +    +   +    +      + + +++        +  D     
Sbjct: 477 LKTKFAEQQQDGDAGAAEAHEKAIQELKASHEGTIAELQKKIDDLSSAQAANDADATKLD 536

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                I +   +L        S       K A     +     +        + + K + 
Sbjct: 537 ALESQISELKAKLEAAEQNAESAKAELESKLASFASLEAKVADMEAELSAAKEEATKAAA 596

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
             A L   +       + Q   +A ++ +    ++L   +     E   +  E    +L 
Sbjct: 597 THAELQKRIDELTEETKSQEAIIAKLKEETASAEELQKRIEQLTEENTTY--EATLSKLK 654

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           E       + L +++++    +   EA I  ++     +  L KR   L    ++ E  I
Sbjct: 655 EE--SSAAEDLQKRIQELEAEAKDKEATIAQLKDNTTGSDELQKRIDELGNDLKDKEATI 712

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           AQ+            ++   E+  +I ++ ++EA
Sbjct: 713 AQL---------KEELAAAEELQKRIEEL-TEEA 736


>gi|325690048|gb|EGD32052.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis SK115]
          Length = 641

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 541

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++   Q             +    ++  ++   L +R   L  Q E+++ QI+
Sbjct: 542 KAEQEALREETEQASPD---KPAPANDYQLQKENQKEQRRLARRLEQLEAQIEDLDSQIS 598

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
           Q+       +     + L E   QI Q+ +  +EAM+E
Sbjct: 599 QLQKAM---QATNDAAELMESQQQIDQLTAAQEEAMLE 633


>gi|301122913|ref|XP_002909183.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262099945|gb|EEY57997.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 891

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 90/282 (31%), Gaps = 9/282 (3%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           + F        ++    E    V+       +       D    +   ++     +K + 
Sbjct: 111 ERFTSEDKLDEWKASAEEKKLAVERRRAHLHKT--QAELDSLNAILRQVEKYNEEMKHEI 168

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R   +    +    + +K   +   Y     +  +    +  +      +      + +
Sbjct: 169 ARTQRAAEKAEESMTVAEKDKVKQDLYIDRLNEQVKTLQDQLAANASQLKTQRMETQAAE 228

Query: 480 PSLREA--ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            +LREA   +         +LQ+    L  ++  +  LQ   + +     ++     E+ 
Sbjct: 229 ETLREAAAQMEAVAFEKKQLLQQWKSALIGMQQRDTALQATQAAISKVVEDELALSAEQR 288

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             +L      ++ + L   +    +     E    +++  ++    L  R  LL++  ++
Sbjct: 289 GYKLSIEKAQQIHETLIATIERFNVELRFVEEQTQNLQAEFE---RLAARHELLAKSLKQ 345

Query: 598 IEKQIAQVTAKGEAEKTAILI--SILHEVHIQIHQIESQEAM 637
            E Q++    +G+  ++        L     + H +E + A 
Sbjct: 346 TEAQVSSAALEGKKLESEAAQVAQHLETTQRERHLLEDEIAA 387


>gi|114578179|ref|XP_001156593.1| PREDICTED: dynactin 1 isoform 13 [Pan troglodytes]
          Length = 1258

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421



 Score = 37.6 bits (85), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310


>gi|32484289|gb|AAH54370.1| Cux1 protein [Mus musculus]
          Length = 667

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 97/282 (34%), Gaps = 16/282 (5%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + E + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 92  DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 151

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q   ++        ++  ++   +   +          KL +     +           
Sbjct: 152 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRT 211

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 212 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 271

Query: 554 DRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQI 602
            ++               +  A  E  I  + +  Q+  A   + R  S  Q  ++E+Q+
Sbjct: 272 IQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQL 331

Query: 603 AQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
               +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 332 NAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 373


>gi|73980513|ref|XP_866414.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 18 [Canis
           familiaris]
          Length = 1276

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 419

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 479

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441



 Score = 37.6 bits (85), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330


>gi|88800246|ref|ZP_01115813.1| replicative DNA helicase [Reinekea sp. MED297]
 gi|88776961|gb|EAR08169.1| replicative DNA helicase [Reinekea sp. MED297]
          Length = 472

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 3/130 (2%)

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
               L + K        E ++L  L+          + L    +  NE ++L+  L    
Sbjct: 18  APDDLHQIKSPPHSLEAEQSVLGALMVDNQQWDNVSEILMPDDFYRNEHRQLYRMLMKLA 77

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                     + + L +    +LL+ +   V    L   T   + +          +L +
Sbjct: 78  EANSPMDVITLGETLEKE---KLLEAVGGMVYITELAENTPSISNLVAYAKIVHERSLLR 134

Query: 587 RFRLLSRQKE 596
           +   ++    
Sbjct: 135 QLITVANDIA 144


>gi|296223516|ref|XP_002757643.1| PREDICTED: dynactin subunit 1 isoform 1 [Callithrix jacchus]
          Length = 1278

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 419

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 479

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441



 Score = 37.6 bits (85), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330


>gi|228923296|ref|ZP_04086584.1| hypothetical protein bthur0011_42750 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836250|gb|EEM81603.1| hypothetical protein bthur0011_42750 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 786

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   ++++QI +    
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---DLQRQIIEFNED 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|194716533|gb|ACF93198.1| hypothetical protein [Sphingobacterium sp. PM2-P1-29]
          Length = 274

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 9/81 (11%)

Query: 9  KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH--DEKTPSFHCNDSKGFYYCFS 66
           +L   IP+ +++  Y+     + N+ +  +    PF+  DE+T S   +  +  +Y  S
Sbjct: 4  DELK-RIPLISIL-NYLQIPCARMNSREAWFK--NPFNGGDERTASTKLDIHRNIWYSHS 59

Query: 67 CHVKGDHLSFLSA---LLGCS 84
              G+++ FL         S
Sbjct: 60 EGFGGNNIDFLMKFLDTENLS 80


>gi|168275870|dbj|BAG10655.1| serine/threonine-protein kinase MRCK alpha [synthetic construct]
          Length = 1691

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV ++       E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           ++ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|119610415|gb|EAW90009.1| myosin, heavy polypeptide 8, skeletal muscle, perinatal, isoform
            CRA_b [Homo sapiens]
          Length = 1737

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 77/245 (31%), Gaps = 14/245 (5%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
             + + +L   L+    H++    +    +  + RLQ   +  + +            + +
Sbjct: 1390 EEAKKKLAQRLQEAEEHVEAVNAKCASLEKTKQRLQNEVEDLMLDVERSNAACAALDKKQ 1449

Query: 458  DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
                   +L     ++G+   K        L  +     +LQ + +EL          +K
Sbjct: 1450 RNFDKETQLHLDDALRGQEDLKEQ------LAIVERRANLLQAEIEELRATLEQTERSRK 1503

Query: 518  LW-SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            +    L       +    +       ++     + QL  +V +    S   E        
Sbjct: 1504 IAEQELLDASERVQLLHTQNTSLINTKKKLENDVSQLQSEVEEVIQESRNAEEKAKKAIT 1563

Query: 577  GYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKGEAEKTAIL---ISILHEVHIQIH 629
                     K+ +     L R K+ +E+ +  +  + +  +   L      + ++  ++ 
Sbjct: 1564 DAAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVR 1623

Query: 630  QIESQ 634
            ++E +
Sbjct: 1624 ELEGE 1628


>gi|1141790|gb|AAB09051.1| nonmuscle myosin-II heavy chain [Drosophila melanogaster]
          Length = 1972

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D +     AA  +   +   L        +     ED     +       + L       
Sbjct: 1605 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1664

Query: 382  VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                  +  ++          AE+    ++  +  + ++        + + +     K  
Sbjct: 1665 AAKEELQALSKEADGKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1724

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                   R   + A   ++    Q   +  L +   S+K  L+   L   L N  +  Q+
Sbjct: 1725 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1781

Query: 501  QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                 A +   N EL+   + +           +         + ++L   G   LL+Q 
Sbjct: 1782 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1841

Query: 554  DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610
              +  D  +   T         V Q  +Q   L  R +LL R  +E E+++  + T K +
Sbjct: 1842 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1901

Query: 611  AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648
             ++    +    E ++ +I+ ++++     G G  S RL
Sbjct: 1902 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 1940


>gi|73980507|ref|XP_866381.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 15 [Canis
           familiaris]
          Length = 1269

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 233 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 292

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 293 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 352

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 353 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 412

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 413 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 472

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 473 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 532

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 533 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 588



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 217 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 276

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 277 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 336

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 337 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 390

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 391 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 434



 Score = 37.6 bits (85), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 209 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 268

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 269 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 323


>gi|326531902|dbj|BAK01327.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 916

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + I   +              + + +      
Sbjct: 393 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALE------KEKDKASKARLVE 446

Query: 567 TEANIVDVRQGYQQALALYKRFRL-------LSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
               + D+R   Q     Y++ +        L +++EE++  + +   + +  + A L  
Sbjct: 447 VRKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAERRMDLARVADLKY 506

Query: 619 SILHEVHIQIHQIESQ 634
             L E+   I ++E +
Sbjct: 507 GALQEIDAAIAKLEGE 522


>gi|253575770|ref|ZP_04853105.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844813|gb|EES72826.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 295

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 68/184 (36%), Gaps = 12/184 (6%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INHPA---ILQEQYQELADIRYDNNELQ 516
            P +     S   G         E AL+  L +       +  +  + L  +   + E+ 
Sbjct: 119 TPEEAAPAGSADPGWEQVLTEGLEEALIGLLGMREREGKHLAADLGERLQRLEAIHGEMV 178

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
           +L   +  ++          +  RL E   G   +Q            +  +  ++ ++ 
Sbjct: 179 RLAPEVVKEY-------RSRLKNRLAELLEGNYDEQRFAMEVAVFADRSNIDEELIRLKS 231

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            ++Q  +L + +  + R+ + + +++  +    G       L++++ E+  ++ +I  Q 
Sbjct: 232 HFEQCRSLLQAYEPVGRKLDFLIQEMNRETNTIGSKANHLALVNLVVELKAELEKIREQA 291

Query: 636 AMIE 639
           A +E
Sbjct: 292 ANLE 295


>gi|261416662|ref|YP_003250345.1| ATPase AAA-2 domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373118|gb|ACX75863.1| ATPase AAA-2 domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326252|gb|ADL25453.1| protein ClpB [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 855

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 71/212 (33%), Gaps = 12/212 (5%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           Q ++KYI + S   R ++        +  +  +++             L + AL+  +  
Sbjct: 310 QEYRKYIEKDSALERRFQPVQVSEPSEDEAISILRGIKDGFDAHHGVRLHDNALVAAVKL 369

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +     + + + +          +E+  ++ E+   +   + 
Sbjct: 370 SNRYISDRFLPDKAIDLIDEAASLVKTQMDTVPEALDTLQRKELQMKIEEQALSKETDE- 428

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                   L     +  + D     +Q    ++  R    + ++++K +     + E  +
Sbjct: 429 ---ASVKRLKELREDLAVTDA--AVKQMQERWQDRRAAFAEVQDLKKALKAAKDEMEQAE 483

Query: 614 TAILISILHEVH------IQIHQIESQEAMIE 639
               ++   E+       I+    +  EA+ +
Sbjct: 484 ARYDLNRAAELKYNKIVNIEKELAQKTEALRK 515


>gi|296816671|ref|XP_002848672.1| myosin-9 [Arthroderma otae CBS 113480]
 gi|238839125|gb|EEQ28787.1| myosin-9 [Arthroderma otae CBS 113480]
          Length = 2637

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 86/269 (31%), Gaps = 29/269 (10%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
             + +R               L   +K  +   +         + I+    +  Q      
Sbjct: 885  RIIQRNFHLYLNLKSSPWWRLFAAMKPLLGETRTAGEVKKRDERIQQLEAKAQQDIADRQ 944

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAILQE 500
                   K  A  +  +   +     +L K ++ K+  LRE  L   L   I     L++
Sbjct: 945  RIEEERRKIEAEMQRVRKTLESERSLALDKEEIFKRLQLREVELSEKLAGAIADQESLED 1004

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVR 558
            Q  EL   +      +K+   L  D    +     +I +RL   ++   E +  L++Q++
Sbjct: 1005 QLDELIAAK------KKIEHEL--DLRRDQLEQAAQIMERLEGEKKEMQERISDLEKQLK 1056

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE------ 612
                     +  I  + +      AL     L  ++ +++E ++     + + E      
Sbjct: 1057 SVENAHNQYDDKIEALNREIN---ALNSHLSLKDKKLQDLEAKLLTSDQQLDLELASTTK 1113

Query: 613  -------KTAILISILHEVHIQIHQIESQ 634
                   +   L+    E+  QI  + S 
Sbjct: 1114 ELDASKKQINQLLEENREIQRQIADLSST 1142


>gi|315139026|ref|NP_079418.1| serine/threonine-protein kinase TAO1 isoform 2 [Homo sapiens]
 gi|332848197|ref|XP_003315601.1| PREDICTED: serine/threonine-protein kinase TAO1 [Pan troglodytes]
 gi|219519599|gb|AAI44068.1| TAOK1 protein [Homo sapiens]
          Length = 853

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 89/309 (28%), Gaps = 42/309 (13%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                   +   + +     +     K+     +    +         K+       +  
Sbjct: 450 QMQEHEQDSELREQMSGYKRMRRQHQKQLMTLENKLKAEMDEHRLRLDKDL------ETQ 503

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-RDQKGPSQRLMQSSLVKGKLSKK 479
           R  ++  +   +++       E        KK  +H + Q+         S  +    +K
Sbjct: 504 RNNFAAEMEKLIKKHQAAMEKEAKVMSNEEKKFQQHIQAQQKKELNSFLESQKREYKLRK 563

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             L+E+  L          +              + + L + L            + + +
Sbjct: 564 EQLKESKELQIKKQFQDTCK----------IQTRQYKALRNHLLE---TTPKSEHKAVLK 610

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-------- 591
           RL E    +L    ++         +T    + + ++   Q L +  +  L         
Sbjct: 611 RLKEEQTRKLAILAEQYDHSINEMLSTQALRLDEAQEAECQVLKMQLQQELELLNAYQSK 670

Query: 592 ---------SRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                     R+  E+E+++     +  +   E+   L +   E    + + +++E  IE
Sbjct: 671 IKMQAEAQHDRELRELEQRVSLRRALLEQKIEEEMLALQNERTERIRSLLERQARE--IE 728

Query: 640 GFGKMSGRL 648
            F   S RL
Sbjct: 729 AFDSESMRL 737


>gi|169832773|ref|YP_001694535.1| ABC transporter ATPase [Streptococcus pneumoniae Hungary19A-6]
 gi|168995275|gb|ACA35887.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 633

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 60/160 (37%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSALYLGDYDYYIEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q++    +     A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KVEVEM-SQIEEASTNNQAKEASPVNDYQAQKESQKEVRKLMRQIESLETEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|86151788|ref|ZP_01070002.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841417|gb|EAQ58665.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 458

 Score = 44.9 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 2/122 (1%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L + I           +++   +     Q ++  + +    ++      + +   
Sbjct: 10  LERAILSSCIMSEEAYANIAGDISPKDFSLKAHQDIFKAVIACSNNKEPISVSFLRKH-- 67

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           ++   ++L ++        L +   E     V++       L        R   EI  +I
Sbjct: 68  KKIDEQILAEILATPSMIDLPAYVNELREKSVKRQLLSFAHLLPTRINEDRAVSEIADEI 127

Query: 603 AQ 604
            +
Sbjct: 128 GK 129


>gi|315057979|gb|ADT72308.1| Replicative DNA helicase [Campylobacter jejuni subsp. jejuni S3]
          Length = 458

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 49/153 (32%), Gaps = 10/153 (6%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L + I           +++   +     Q ++  + +    ++      + +   
Sbjct: 10  LERAILSSCIMSEEAYASIAGDISPKDFSLKAHQDIFKAVIACSNNKEPISVSFLRKH-- 67

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           ++   ++L ++        L +   E +   V++       L        R   EI  +I
Sbjct: 68  KKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQLLSFAHLLPTRINEDRAVSEIADEI 127

Query: 603 --------AQVTAKGEAEKTAILISILHEVHIQ 627
                    +V ++   +   ++  +  E   Q
Sbjct: 128 GKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ 160


>gi|311893360|ref|NP_001185796.1| dynactin subunit 1 isoform 3 [Mus musculus]
          Length = 1239

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%)

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
                  L +L    +      +   +   +  DL              L ++    +  
Sbjct: 201 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 260

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                      L  E         ++E E       +   +LEI          D     
Sbjct: 261 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 320

Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Y  + + ++  +L    +           +     +  +  +Q L      + +L ++ S
Sbjct: 321 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELS 380

Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538
             E+ +        A L  +E  + L D   +  E +++L   +       +     + +
Sbjct: 381 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 440

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R  E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    
Sbjct: 441 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 500

Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
           ++   +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 501 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 187 VRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 306

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 361 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 404


>gi|257386976|ref|YP_003176749.1| hypothetical protein Hmuk_0913 [Halomicrobium mukohataei DSM 12286]
 gi|257169283|gb|ACV47042.1| conserved hypothetical protein [Halomicrobium mukohataei DSM 12286]
          Length = 330

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 11/119 (9%)

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             +  +    I  R+    F E    L                ++ D    Y    A   
Sbjct: 106 NSRGDWDEGRITVRVPPENFSEARDDLAVLGHV-----EDESVSVQDFTDEYNDREA--- 157

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           R   L +++  +E  +++     ++E+ + + + L EV  ++  +  Q++ +E    MS
Sbjct: 158 RIEDLQQEERALESLLSRAN---DSEEASEIRNDLREVRDELRTLRQQQSSLERREAMS 213


>gi|242006231|ref|XP_002423957.1| myosin-9, putative [Pediculus humanus corporis]
 gi|212507227|gb|EEB11219.1| myosin-9, putative [Pediculus humanus corporis]
          Length = 1978

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 75/261 (28%), Gaps = 22/261 (8%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1573 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGRAEALRMKKKLEADINELEIALDHA 1632

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1633 NKANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIAER-------RANALQNEL 1685

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE---------EIHQRLCE--RGFGELL 550
             +    +   +   ++    L     +      +         ++   L        ELL
Sbjct: 1686 EESRTLLEQADRGRRQAEQELSDAHEQLNELSAQNASMSAAKRKLESELQTLHSDLDELL 1745

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
             +       A            ++R     A    K  + L +Q ++++ ++ +  A   
Sbjct: 1746 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKDLQVRLDEAEANAL 1805

Query: 608  KGEAEKTAILISILHEVHIQI 628
            KG  +    L   + E+  ++
Sbjct: 1806 KGGKKAIQKLEQRVRELENEL 1826



 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 69/222 (31%), Gaps = 15/222 (6%)

Query: 428  IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--GPSQRLMQSSLVKGKLSKKPSLREA 485
            I +R     Q  + E         +  R  +Q+     ++L + S     +S      E+
Sbjct: 1673 IAERRANALQNELEESRTLLEQADRGRRQAEQELSDAHEQLNELSAQNASMSAAKRKLES 1732

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L     +   +L E        +    +  +L   L     +      E++ + L ++ 
Sbjct: 1733 ELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADEL--RAEQDHAQTQEKLRKALEQQ- 1789

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA--------LYKRFRLLSRQKEE 597
              +L  +LD    +A          +    +  +  L           K  R   R+ +E
Sbjct: 1790 IKDLQVRLDEAEANALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKE 1849

Query: 598  I--EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            +  + +  +   +   +    L   +     QI + E   A+
Sbjct: 1850 LSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL 1891


>gi|156555881|ref|XP_001603577.1| PREDICTED: similar to transcription initiation factor [Nasonia
           vitripennis]
          Length = 1000

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD--RQVRDAGLWSATTEA 569
               QK+   + S  +E+       +     +     L+++L    + R   +       
Sbjct: 793 TPLQQKINKIVSSYGLEEPNQEVASLISHAAQERLKNLVEKLAIIAEHRIDLVKVDPRYE 852

Query: 570 NIVDVRQGYQ--QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI- 626
              DVR   +  + L   +R R   +++E + K  A+  AK E  + A L +   E+   
Sbjct: 853 VTQDVRAQLKFLEELDRVERKRHEEQEREVLLKA-AKSRAKTEDPEQAKLKAKAKEMQRA 911

Query: 627 QIHQIESQEA 636
           ++ +   +EA
Sbjct: 912 EMEEARQREA 921


>gi|148687361|gb|EDL19308.1| cut-like 1 (Drosophila), isoform CRA_a [Mus musculus]
          Length = 672

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 31/285 (10%), Positives = 93/285 (32%), Gaps = 19/285 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + E + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 94  DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 153

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q   ++        ++  ++   +   +          KL +     +           
Sbjct: 154 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRT 213

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-----YFLPEEIHQRLCERGFGELL 550
            +   + +   +   +     ++   +       +         E + ++L        L
Sbjct: 214 ELFDLKTKYDEETTANFPRADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQL 273

Query: 551 KQLDRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIE 599
               ++               +  A  E  I  + +  Q+  A   + R  S  Q  ++E
Sbjct: 274 ASQIQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLE 333

Query: 600 KQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           +Q+    +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 334 QQLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 378


>gi|73980491|ref|XP_866265.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 9 [Canis
           familiaris]
          Length = 1202

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575



 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421



 Score = 37.6 bits (85), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310


>gi|66044174|ref|YP_234015.1| chromosome segregation ATPase [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254881|gb|AAY35977.1| similar to Chromosome segregation ATPases [Pseudomonas syringae pv.
           syringae B728a]
          Length = 646

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 78/255 (30%), Gaps = 19/255 (7%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY---SQAIRDRLQQLFQKYITEHSG 445
                   +PD     +         I D      Y    +++  R       ++ +   
Sbjct: 198 LFSVLHGVSPDYAIVAQKAAAPEQLEIFDAVFGKEYGMSLESLSRRYDSQVAGWVEKSDA 257

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
                ++      Q+G     +  +L +   + +  LRE   L  +      L++  + L
Sbjct: 258 TCAELREQLNQVQQRGQELEQIVRALEESGTATETELREQ--LNQVQQRGQELEQIVRAL 315

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +         +L   L       +    E+I + L E G      +L  Q+        
Sbjct: 316 EESGAATET--ELRQQLNQVQQRGQEL--EQIARTLEESG-AATHAELRDQLSHVQEQGK 370

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEE-------IEKQIAQVTAKGEAEKTAILI 618
             E+++  ++      +    R   L  +  E       + ++ AQ+       +     
Sbjct: 371 HLESSVHALQN--NDEVEARIREVTLRAELAESRVHSFQLGQEAAQLRMNESEARLNEAF 428

Query: 619 SILHEVHIQIHQIES 633
           S L E+  Q+ Q++ 
Sbjct: 429 SYLKELQAQVTQLQQ 443


>gi|238504128|ref|XP_002383296.1| DNA repair protein Rad50 [Aspergillus flavus NRRL3357]
 gi|83764631|dbj|BAE54775.1| unnamed protein product [Aspergillus oryzae]
 gi|220690767|gb|EED47116.1| DNA repair protein Rad50 [Aspergillus flavus NRRL3357]
          Length = 1326

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 94/295 (31%), Gaps = 23/295 (7%)

Query: 355  RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              ED  +               ++          E E        +R EL   L++    
Sbjct: 721  DDEDVKNLEEDLEAARSASTSYDTWSRFQQTEIPELEKEEEQYVLQRDELLNQLEDRDKI 780

Query: 415  IKDQKLRYYYSQAIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM- 467
            + ++  +    +A+        R     +   ++        +     R  +   + +  
Sbjct: 781  VSEKTEKKRDVEALAKTVNTIVRYDGEIKSIRSQIQDLSSKQQDTTSARTLEDIQEEIAA 840

Query: 468  ---QSSLVKGKLSKKPSLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLF 523
               +S  +K  LSK    +E     T IN+  + L++    L + ++       L + + 
Sbjct: 841  IGEKSRALKKSLSKLTHEKEQT--QTEINNLELQLRDVKSNLDNAKFQLERKSDLLARI- 897

Query: 524  SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
             ++        E I +   +R   +L  +L +        S   EA   +++Q   Q   
Sbjct: 898  EEYKNLNNQQREAIAKA--DRDIEDLTPELLKVQAKYDDISQRAEAREREMQQTISQMSE 955

Query: 584  LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
                      Q E   ++I     +G   +       L  +  QI Q+E+++A I
Sbjct: 956  SVH-------QLELANEEIDAYNERGGPTQLERSKRELENIEKQIGQLEAEQANI 1003


>gi|332679035|gb|AEE88164.1| ClpB protein [Francisella cf. novicida Fx1]
          Length = 859

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 2/132 (1%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    ++   + S   + +      I  ++      +   +  ++  +       
Sbjct: 390 AIDLVDEAASQIRMEIDSKPEKMESLYRRIIQLKMQREQLKKEKDEATKKRLEILEEEIK 449

Query: 567 TEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHEV 624
              +     +   +A  L  +    L  + E+ + ++ +    G+  K A L    + E+
Sbjct: 450 GLESEYKGFEELWKAEKLKMQGTSKLKEELEKAKFELEKYQRAGDLSKMAELQYGKIPEL 509

Query: 625 HIQIHQIESQEA 636
             QI QIE+ EA
Sbjct: 510 EAQIKQIENTEA 521


>gi|317133296|ref|YP_004092610.1| ATP-dependent chaperone ClpB [Ethanoligenens harbinense YUAN-3]
 gi|315471275|gb|ADU27879.1| ATP-dependent chaperone ClpB [Ethanoligenens harbinense YUAN-3]
          Length = 872

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 66/185 (35%), Gaps = 9/185 (4%)

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
           I + +   R ++     +     +  +++    K ++     + + AL+         + 
Sbjct: 325 IEKDAALERRFQPIVVDQPSVEDTISILRGLKEKFEIHHGVRITDGALIACAELSDRYIS 384

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +++     I   +     L + + S   E        +   +      + LK+ D     
Sbjct: 385 DRFLPDKAIDLMDEAAAMLRTEIDSMPTELDEISRRVMQLEIE----RQALKKEDDPASQ 440

Query: 560 AGLWSATTEANI-----VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           + L +   E          ++  ++       R + + +Q E+++++I +   + + EK 
Sbjct: 441 SRLVTLEKELAALKEKGDRMKAQWEMEKKDIGREKEIKQQIEDVKREIEEAERRYDLEKL 500

Query: 615 AILIS 619
           A+L +
Sbjct: 501 AVLQN 505


>gi|218667154|ref|YP_002425328.1| hypothetical protein AFE_0840 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218519367|gb|ACK79953.1| hypothetical protein AFE_0840 [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 937

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 7/153 (4%)

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           + Q+  + L    ++  ELQK    +   F +      E        R   E    + ++
Sbjct: 374 LSQDFVERLCSSDHEGTELQKAIEDVV--FAKLDEIQKEGYSSFGELRKAREAASNIQKE 431

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                L +   +  +  +++   Q  +  +    + +Q EE++KQ+   T   + +    
Sbjct: 432 ALRGELATLHKK--VDRLQEAIDQRGSKIRAKAEVEKQVEELKKQLPDATQSVDQKILEE 489

Query: 617 LISI---LHEVHIQIHQIESQEAMIEGFGKMSG 646
           L      L E+  QI     +   IEG  +  G
Sbjct: 490 LEKQQILLRELEEQIANRSRRRRTIEGAIESYG 522


>gi|218289474|ref|ZP_03493702.1| hypothetical protein AaLAA1DRAFT_1288 [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240342|gb|EED07524.1| hypothetical protein AaLAA1DRAFT_1288 [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 167

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 33/151 (21%)

Query: 34  AVKGDYWACCP--------FHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSF 85
           +  G + A CP        FH       + +  K  +YC  C  KG  ++F + L G SF
Sbjct: 19  SRPGQWKAHCPACGDQGRNFH------LYVSSVKDTFYCHKCGEKGGAVAFHAWLRGISF 72

Query: 86  IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145
            E+ +  A +         P+  +K          +  A       L          +  
Sbjct: 73  -EAAK--AELY--------PQGARKRN--------LHPAERLTAAQLAELGFIPSKPWRT 113

Query: 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
            +G++       +           +EH R K
Sbjct: 114 PKGMNPLEWRRQRKAMLDWIWEEWQEHERFK 144


>gi|195473854|ref|XP_002089207.1| GE25472 [Drosophila yakuba]
 gi|194175308|gb|EDW88919.1| GE25472 [Drosophila yakuba]
          Length = 624

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 78/226 (34%), Gaps = 23/226 (10%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R   +  + + L++L +             ++     D +   Q L +    K ++  + 
Sbjct: 180 RKKINDDLNEALKELDRLRKQFDETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQE 239

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                 +  T         E    L+     + +L++    L + + EQ     ++I   
Sbjct: 240 INESRRIKQT------EYSEIDGRLSSE--YDAKLKQSLQELRAQYEEQMRINRDDIESL 291

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             ++        + R    A   S +T  +I ++R    +   L  +   L +   ++  
Sbjct: 292 YEDK--------IRRLQEAAARTSNSTHKSIEELRSTRVRIDGLNAKINDLEQTNADLNA 343

Query: 601 QIAQVTAKGEAEKTAI------LISILHEVHIQI-HQIESQEAMIE 639
           +I ++  + + ++         L   L  +  ++  Q++  + +++
Sbjct: 344 RIRELERQLDNDRERHGQEIALLEKELIRLREEMTQQLQEYQDLMD 389


>gi|194756334|ref|XP_001960434.1| GF11513 [Drosophila ananassae]
 gi|190621732|gb|EDV37256.1| GF11513 [Drosophila ananassae]
          Length = 2013

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 85/242 (35%), Gaps = 18/242 (7%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +  R   ++ I +                    +  AR    +   +    +S V    S
Sbjct: 1745 ETERDELAEEIAN-------NANKGSLMIDEKRRLEARIATLEEELEEEQSNSEVLLDRS 1797

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-------FSDFVEQK 530
            +K  L+   L   L N  +  Q+     A +   N EL+   + +           +   
Sbjct: 1798 RKAQLQIEQLTTELANEKSNSQKNENGRALLERQNKELKAKLAEIETAQRTKVKATIATL 1857

Query: 531  YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRF 588
                  + ++L   G   LL+Q   +  D  +   T         V Q  +Q   L  R 
Sbjct: 1858 EAKIANLEEQLENEGKERLLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRI 1917

Query: 589  RLLSRQKEEIEKQIA-QVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSG 646
            +LL R  +E E+++  + T K + ++    +    E ++ +I+ ++++     G G  S 
Sbjct: 1918 KLLKRNLDETEEELQKEKTQKRKYQRECEDMIESQEAMNREINSLKTKLRRTGGMGLSSS 1977

Query: 647  RL 648
            RL
Sbjct: 1978 RL 1979


>gi|149690347|ref|XP_001503149.1| PREDICTED: similar to KIAA0583 protein [Equus caballus]
          Length = 2019

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 33/331 (9%), Positives = 89/331 (26%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +L       +     
Sbjct: 401 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNSDLSRLEQLEEENQRLLKQTEMLTQQRDTA 460

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E                      
Sbjct: 461 IQLQHQCALSLRRFEAIH--HELNKATAQNKDLQWEMELLQSELTELRTTQVKTAKESEK 518

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
               +D      Y   + +R Q + +  K  TE        K +   +        +++ 
Sbjct: 519 YKEERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKAAASEEMEVLRQ 577

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                 +    + +EA +L                         + + L   L     E 
Sbjct: 578 IKDTVTMDAGRANKEAEILR-----------------------KQCKALCQELKEALQEA 614

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 615 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 671

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+   +   +  +   L++ 
Sbjct: 672 DVSRELKELKEQME--SQLEKEARFRQLMAH 700


>gi|114578203|ref|XP_001156090.1| PREDICTED: dynactin 1 isoform 5 [Pan troglodytes]
          Length = 1101

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575



 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421



 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310


>gi|62087516|dbj|BAD92205.1| CDC42 binding protein kinase alpha variant [Homo sapiens]
          Length = 1702

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV ++       E       ++   ++Q  A  K+ + L +++E
Sbjct: 497 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFRQIKAYEKQIKTLQQERE 556

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           ++ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 557 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 603


>gi|307105686|gb|EFN53934.1| hypothetical protein CHLNCDRAFT_58396 [Chlorella variabilis]
          Length = 1348

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 72/228 (31%), Gaps = 13/228 (5%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             Q +  + Q+       +        +   R              + V     K      
Sbjct: 993  KQTLDTQYQEALSHQPLDVDVGAGDGEAAQRLAQLGNQIAEAEVQADVAEDALKAAQAEL 1052

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-RLCE 543
              L   L+   A+ Q+  ++LA  R     L      +     E +      + +  +  
Sbjct: 1053 ERLARKLLEARAVPQQVAEQLATCRDAITTLAAEKEGVAQALAEAREASAGVLQKMAVVA 1112

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVR--QGY------QQALALYKRFRLLSRQK 595
                E     ++ +RDA    +  EA  +  +    +      ++A+        + R+ 
Sbjct: 1113 AKLAEAEGHFEQSLRDAEGVCSREEAAAMRAQLVAEWHKEGQSEEAIRGLLEQPAMERRV 1172

Query: 596  EEIEKQI--AQVTAKGEAEKTAILISILHE--VHIQIHQIESQEAMIE 639
             ++E +I   +  A+   ++  + ++ L       ++   E +EA+ E
Sbjct: 1173 AQVEHKIVKREADAQSSYDQLEVELADLRNKLAKRRLRHAEGEEALRE 1220


>gi|304414040|ref|ZP_07395408.1| poly(A) polymerase I [Candidatus Regiella insecticola LSR1]
 gi|304283254|gb|EFL91650.1| poly(A) polymerase I [Candidatus Regiella insecticola LSR1]
          Length = 471

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 35/310 (11%), Positives = 93/310 (30%), Gaps = 27/310 (8%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS--FIRCYGKTAFEKLIVESL 379
           D D        +   L     + G R     +  G D       R + +    K   ++ 
Sbjct: 87  DFDIATNATPEQVRKLFRNCRLIGRRFRLAHIMFGRDVIEVATFRGHHEQELSKNSDKNA 146

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY------YSQAIRDRLQ 433
                      +N   +  ++    +  + +      D  LR Y        Q +   + 
Sbjct: 147 SQQAQSGMLLRDNIFGSIEEDAQRRDFTINSLYYGSSDFVLRDYCGGLHDLKQGVIRLIG 206

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-- 491
               +Y  +     R  +  A+      P        +        P+      L  L  
Sbjct: 207 DPEVRYREDPVRMLRAVRFAAKLDMTISPETAEPIKRMASLLSDIPPARLFEESLKLLQG 266

Query: 492 ---------INHPAILQEQYQELAD--IRYDNNELQKLWSFLF----SDFVEQKYFLPEE 536
                    +    + Q  +  +++    + ++ ++++   +           K   P  
Sbjct: 267 GYGYKSYLKLCEYQLFQPLFPLISNHFTEHQDSPMERILVQVLKNTDDRLHNDKQVNPAF 326

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +   +      E  ++L ++   A   + +    + DV +   ++LA+ KR  +++R+  
Sbjct: 327 LFATMLWYPLIEHAQKLKQESGLAYHEAFS--LAMNDVLELENRSLAIPKRITIVTREIW 384

Query: 597 EIEKQIAQVT 606
            ++ ++ +  
Sbjct: 385 SLQLRLPRRE 394


>gi|302757125|ref|XP_002961986.1| hypothetical protein SELMODRAFT_164801 [Selaginella moellendorffii]
 gi|300170645|gb|EFJ37246.1| hypothetical protein SELMODRAFT_164801 [Selaginella moellendorffii]
          Length = 618

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 50/404 (12%), Positives = 111/404 (27%), Gaps = 52/404 (12%)

Query: 207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN---------FFGALNY 257
           +    ++RG       R   +        +     + + K +           F+ A   
Sbjct: 95  VIKWFATRGISQKVLQRNRVEQIYSGSELAIAFPYYKENKIIDCKYRTIPEKRFWKARGA 154

Query: 258 LQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL------------TEY 305
            +++            +++VEG MD LS+ +AG+ N VS    A              + 
Sbjct: 155 ARRTFYGLEDIKGRDEVVIVEGEMDKLSMEEAGIINCVSVPDGAPVKAADGETPDPEEDK 214

Query: 306 QLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           +   LW          RI L  D D PGL  A +                 V   + +D 
Sbjct: 215 KFSYLWDCKEQFGKVTRIFLATDADGPGLALAEELARRFGRERCWRVNWPVVDGKQLKDA 274

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRE---------TENRSFNTPDERAELEIHLKN 410
           +  +   G  A  +++ +S         +            +      +  +     L  
Sbjct: 275 NEVLLTLGPEALREVVAKSELYPIRGLFQFSNFFKEIDDYYHMRVEEAEGASTGWKGLDE 334

Query: 411 CINHIKDQ--KLRYYYSQAIRDRLQQLFQKYITEHSGY----GRYWKKNARHRDQKGPSQ 464
               +  +   +    +    + +  L                   K     R       
Sbjct: 335 YYTVVPGELTIVTGVPNSGKSEWIDALVCNLNRSKGWSFALCSMENKVTDHARKLIEKHY 394

Query: 465 RLMQSSLVKGKLSKKPSLREAAL-LLTLINHPAILQEQYQELADIRYDNNELQK------ 517
           R           + + +  E A  L  L NH  +++ + ++L    +  +  +       
Sbjct: 395 RKPFFEAKYSNSTPRLTPEEFAAGLEWLDNHFYLIRCENEKLPSADWVLDRAKAAVQRYG 454

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
           +   +   + E      +    +       ++L ++ R  +   
Sbjct: 455 IRGLVIDPYNE---LDHQRSSSQTETEYVSQILTKIKRFAQHHD 495


>gi|297272261|ref|XP_001111098.2| PREDICTED: serine/threonine-protein kinase TAO1-like isoform 2
           [Macaca mulatta]
          Length = 853

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 89/309 (28%), Gaps = 42/309 (13%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                   +   + +     +     K+     +    +         K+       +  
Sbjct: 450 QMQEHEQDSELREQMSGYKRMRRQHQKQLMTLENKLKAEMDEHRLRLDKDL------ETQ 503

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-RDQKGPSQRLMQSSLVKGKLSKK 479
           R  ++  +   +++       E        KK  +H + Q+         S  +    +K
Sbjct: 504 RNNFAAEMEKLIKKHQAAMEKEAKVMSNEEKKFQQHIQAQQKKELNSFLESQKREYKLRK 563

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             L+E+  L          +              + + L + L            + + +
Sbjct: 564 EQLKESKELQIKKQFQDTCK----------IQTRQYKALRNHLLE---TTPKSEHKAVLK 610

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-------- 591
           RL E    +L    ++         +T    + + ++   Q L +  +  L         
Sbjct: 611 RLKEEQTRKLAILAEQYDHSINEMLSTQALRLDEAQEAECQVLKMQLQQELELLNAYQSK 670

Query: 592 ---------SRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                     R+  E+E+++     +  +   E+   L +   E    + + +++E  IE
Sbjct: 671 IKMQAEAQHDRELRELEQRVSLRRALLEQKIEEEMLALQNERTERIRSLLERQARE--IE 728

Query: 640 GFGKMSGRL 648
            F   S RL
Sbjct: 729 AFDSESMRL 737


>gi|296268776|ref|YP_003651408.1| peptide chain release factor 2 [Thermobispora bispora DSM 43833]
 gi|296091563|gb|ADG87515.1| peptide chain release factor 2 [Thermobispora bispora DSM 43833]
          Length = 378

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 12/112 (10%)

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I   L   G  + + +L+ Q     LW+   +A    V            R   L+R+ E
Sbjct: 20  IQDVLDIDGLRKQIAELEEQAAAPDLWNDPEKA--QRVTSRLSHLQGEVNRIEELARRLE 77

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE----------SQEAMI 638
           ++         +G+ E  A     L ++   I  +E           +EA+I
Sbjct: 78  DLPVLFELAAEEGDQEALAEAERELAKLKSDIGALEVRTLLSGEYDEREALI 129


>gi|269213980|ref|ZP_05983302.2| putative phage P4 alpha, zinc-binding [Neisseria cinerea ATCC
           14685]
 gi|269144884|gb|EEZ71302.1| putative phage P4 alpha, zinc-binding [Neisseria cinerea ATCC
           14685]
          Length = 367

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 16/101 (15%)

Query: 42  CCPFHDEKTPSFHCNDSKGF--YYCFSCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGV 98
            CP    K   F   D K    + C  C    G     L  L G  F E+ + +A + G+
Sbjct: 54  PCPNCGGKD-RFRFTDHKQGGGFICNGCAPDGGSGFDLLMLLYGYDFTEAYKAVAGVLGM 112

Query: 99  -----------PLPVVDPK-IEKKEKIQTDLIRLIEVATDF 127
                        P   P   ++ E  +  L  L E    +
Sbjct: 113 GGGSTAPAVMKQPPAPLPDTAKEDEAKRQRLAALWESCERW 153


>gi|170087748|ref|XP_001875097.1| hypothetical protein LACBIDRAFT_305228 [Laccaria bicolor S238N-H82]
 gi|164650297|gb|EDR14538.1| hypothetical protein LACBIDRAFT_305228 [Laccaria bicolor S238N-H82]
          Length = 1682

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 74/216 (34%), Gaps = 21/216 (9%)

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT--- 490
               ++ +          +   R         RL++  + +   +     +E +LL     
Sbjct: 1351 DDVRQQLQRVKQENLELETELRENINAEQKARLLEKRVAENAETIAQLRQERSLLAADHK 1410

Query: 491  -LINHPAILQEQYQELADI---RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ER 544
             L  H + + E   +L +     + +++ ++         ++ +    E++   L     
Sbjct: 1411 DLQRHYSEISENANKLREEHATHFTSHDNRR-------HQLDIQLLEIEDLRHALEHQAN 1463

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                  ++ D+   +    +        D+++  + A A  K  + L  +KE +E ++ +
Sbjct: 1464 ELQRTEQEKDKIFSEKNDVAEMVALLENDLKRVRRDAEAFGKDLKTLRAEKERVEGRLKE 1523

Query: 605  VTAKGEAEKTA-----ILISILHEVHIQIHQIESQE 635
              AKGE  +        L++   E   +      +E
Sbjct: 1524 EVAKGERARKQGAAQVRLLNEQLEKQKEKAGRAKEE 1559


>gi|149728368|ref|XP_001498719.1| PREDICTED: TATA element modulatory factor 1 [Equus caballus]
          Length = 1095

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 91/275 (33%), Gaps = 16/275 (5%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              +   K   E+L             +E + +     +E  +L        N IK  + 
Sbjct: 524 DAAKKEIKNMKEELATRLNSSETADLLKEKDEQIQGLMEEGEKLSKQQLQNSNIIKKLRA 583

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +   ++ I  +L +  ++   E              +   G  +   Q      KL+   
Sbjct: 584 KDKENENIIAKLNKKVKELEEELQHLK---------QVLDGKEEVEKQHRENIKKLNSVV 634

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             +E  L    ++   + ++     A +     EL  L      +  +        + + 
Sbjct: 635 ERQEKDLGRLQVDMDELEEKNRSIQAALDSAYKELTDLHKA---NAAKDSEAQEAALSRE 691

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIE 599
           +  +   EL   L++   +A     T    + D+R   Q+A  A  ++   L  +  E++
Sbjct: 692 MKAK--EELSAALEKAQEEARQQQETLAIQVGDLRLALQRAEQAAARKEDYLRHEISELQ 749

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +++ +   +   E +  + +    +  QI  +++ 
Sbjct: 750 QRLQEAENR-NQELSQNVSTTTRPLLRQIENLQAT 783


>gi|6013196|gb|AAF01280.1|AF174433_1 heat shock protein 101 [Triticum aestivum]
          Length = 913

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 74/205 (36%), Gaps = 6/205 (2%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL-LLTLI 492
           + ++KY+ + + + R +++          +  +++    K +      +++ AL +   +
Sbjct: 320 EEYRKYVEKDAAFERRFQQVFVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVIAAQL 379

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           +   I+     +   I   +     +   L S   E      + I   +      +   +
Sbjct: 380 SSRYIMGRHLPD-KAIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALEKEKDK 438

Query: 553 LDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
              + R   +     +       ++  Y++        R L +++EE++  + +   + +
Sbjct: 439 -ASKARLVDVRKELDDLRDKLQPLQMKYRKEKERIDEIRSLKQRREELQFTLQEAERRMD 497

Query: 611 AEKTAIL-ISILHEVHIQIHQIESQ 634
             + A L    L EV   I ++E +
Sbjct: 498 LARVADLRYGALQEVDAAIAKLEGE 522


>gi|50510675|dbj|BAD32323.1| mKIAA0866 protein [Mus musculus]
          Length = 1984

 Score = 44.9 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 99/287 (34%), Gaps = 22/287 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 889  ELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 948

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA R ++ Q       +        +K    +       + ++  ++        
Sbjct: 949  RGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSK 1008

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKY 531
              +E  LL         + +    LA+       L KL      + S+        E+  
Sbjct: 1009 LSKERKLLE------ERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSR 1062

Query: 532  FLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
               E++ ++L      F E +  L  Q+ +  +  A  E  +        + +A   +  
Sbjct: 1063 QELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIA---QKN 1119

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
               ++  E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1120 NALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1166


>gi|321453322|gb|EFX64568.1| hypothetical protein DAPPUDRAFT_266172 [Daphnia pulex]
          Length = 1009

 Score = 44.9 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 74/206 (35%), Gaps = 2/206 (0%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           ++L ++   E +   R  + N     ++       + + +  +  ++    E   +   +
Sbjct: 5   RELTREEKDEKNRKAREKRSNEDPEAKEVRLAANRERAKIAREEKRRRLNPEEVQVAKNL 64

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           N     +E+  E  D R     L      +      Q         QR+ ++   +  +Q
Sbjct: 65  NAKKAREERQAEAPDERALRQRLDAERKRVARANETQVEHEARLHDQRIRQQLLRQ--EQ 122

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
            + + R   L  A  +A      +   + LA  +R  +L +++E   + +A+   + +  
Sbjct: 123 AEEENRARLLAEAERQAVFRQEEENRARLLAEAERQAVLRQEEENRARLLAEAERQADLR 182

Query: 613 KTAILISILHEVHIQIHQIESQEAMI 638
           +   + + L     +   +  QEA I
Sbjct: 183 QDEQIRARLQAEAERQAALRQQEAAI 208


>gi|297622895|ref|YP_003704329.1| type 11 methyltransferase [Truepera radiovictrix DSM 17093]
 gi|297164075|gb|ADI13786.1| methyltransferase type 11 [Truepera radiovictrix DSM 17093]
          Length = 452

 Score = 44.9 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 84/234 (35%), Gaps = 29/234 (12%)

Query: 429 RDRLQQLF--QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + L +L   +  I E     R  +     R +   ++R    + ++   +++  L E +
Sbjct: 143 AELLAELESARAEIAEREAQVREAEAAGDTRVEAVLAERDTARAELEALRAREAQLVEQS 202

Query: 487 --LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             L   L+     + E  +E+  +    +E ++L   L S   E      +E    L E 
Sbjct: 203 ERLRTQLVASEEAITEAGEEITRL---TDEQRRLTQELQSTRNELAALPTQEELNALLEE 259

Query: 545 ------GFGELLKQLDRQVRDAGLWSATTEANIVDVR-------------QGYQQALALY 585
                     +  QL+ +   A L +A  EA  +  +             +    A+   
Sbjct: 260 RDTLLNELESVRAQLNERPTQAQLTAAREEAEALRAQLRDRPTPEIVAALEAQVAAIQSE 319

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +  R      E  E ++A++  +  A  T    + L+E   +I  +E+Q   IE
Sbjct: 320 RDARPTQATLEAAEARVAELEERLNARPTQ---AQLNEAQARIRALEAQIQAIE 370


>gi|257066046|ref|YP_003152302.1| replicative DNA helicase [Anaerococcus prevotii DSM 20548]
 gi|256797926|gb|ACV28581.1| replicative DNA helicase [Anaerococcus prevotii DSM 20548]
          Length = 443

 Score = 44.9 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/169 (9%), Positives = 55/169 (32%), Gaps = 19/169 (11%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +      L E A++ +++          Q +  + + ++  Q+++  +   F +      
Sbjct: 6   RPLPNDFLAEQAIIGSILAKNETFDSVNQIIKPVDFYDSRTQRIYKSILKMFEKDIKVDE 65

Query: 535 EEIHQRLCER------GFGELLKQL-------------DRQVRDAGLWSATTEANIVDVR 575
             +  +L         G  E + ++              + V++  +  +   A+   + 
Sbjct: 66  ISLISQLKNENILQEVGGEEFITEITLSSFYTPNIDTYAKSVKEKSILRSLIGASEDIID 125

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             Y+    +         +  EI +          +E  +  + +++E+
Sbjct: 126 LSYRHDDKIDSILSEAESKIFEISQDTHNKGLVRLSETMSETLQMINEL 174


>gi|145539197|ref|XP_001455293.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423092|emb|CAK87896.1| unnamed protein product [Paramecium tetraurelia]
          Length = 665

 Score = 44.9 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 102/284 (35%), Gaps = 17/284 (5%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +R + +    +L  E   L +       ++++ +   E + L + ++     I D   + 
Sbjct: 308 LRSFSEDEVRRLRNEMSRLQEQN--NHLQSQNQSLMSEISRLNMTMEQSQYAISDANKQK 365

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
           Y  +  +++++Q   K+        R  +++ +        +RL          +     
Sbjct: 366 YIFEEYKEKIRQFELKFQELQMQNERLRQQDHKVAVLTTEIERLNNLIKQLNTDADDWKQ 425

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           +   + L L+++  I +     +       +E+++L   L     EQK +  ++I +R  
Sbjct: 426 KYQRIELALMDYRQIEKTNRDAVTKNELLLDEIERLKKIL-----EQKQYDMDQIIKR-- 478

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                  +         +       E+   +     Q    L ++ +   +Q   ++ Q+
Sbjct: 479 NDLIQSQISTYQVNASASVSRIQEYESTQRETSTILQDNERLNRQLQQYQQQISTLQIQV 538

Query: 603 AQVTAKGEAE--------KTAILISILHEVHIQIHQIESQEAMI 638
            + T K +                + + ++  QIH+ E++ AM+
Sbjct: 539 QEQTTKNQQLITQQQQSYLINNNSAEIDKLKRQIHEYENKIAML 582


>gi|255321531|ref|ZP_05362689.1| replicative DNA helicase [Campylobacter showae RM3277]
 gi|255301387|gb|EET80646.1| replicative DNA helicase [Campylobacter showae RM3277]
          Length = 469

 Score = 44.9 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 10/98 (10%), Positives = 31/98 (31%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A+L ++I     L E +  L+   +       ++  +     E        +  +L  
Sbjct: 17  ERAILASIIYSADNLSEIFDILSPFDFYLRAHGDVYDAMVKCLNENLPVETGFLKTKLGN 76

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +    ++ ++        +     E     +++   + 
Sbjct: 77  KFDENVMNEIIGTNSILDVKKYANEIKEKSIKRSLVKI 114


>gi|57238239|ref|YP_178680.1| replicative DNA helicase [Campylobacter jejuni RM1221]
 gi|86149026|ref|ZP_01067258.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88596970|ref|ZP_01100206.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562214|ref|YP_002343993.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|57167043|gb|AAW35822.1| replicative DNA helicase [Campylobacter jejuni RM1221]
 gi|85840384|gb|EAQ57641.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190659|gb|EAQ94632.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359920|emb|CAL34708.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284925824|gb|ADC28176.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315929739|gb|EFV08911.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni 305]
          Length = 458

 Score = 44.9 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 49/153 (32%), Gaps = 10/153 (6%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L + I           +++   +     Q ++  + +    ++      + +   
Sbjct: 10  LERAILSSCIMSEEAYASIAGDISPKDFSLKAHQDIFKAVIACSNNKEPISVSFLRKH-- 67

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           ++   ++L ++        L +   E +   V++       L        R   EI  +I
Sbjct: 68  KKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQLLSFAHLLPTRINEDRAVSEIADEI 127

Query: 603 --------AQVTAKGEAEKTAILISILHEVHIQ 627
                    +V ++   +   ++  +  E   Q
Sbjct: 128 GKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ 160


>gi|291405037|ref|XP_002719006.1| PREDICTED: myosin, heavy chain 1, skeletal muscle, adult [Oryctolagus
            cuniculus]
          Length = 1937

 Score = 44.9 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVETMQSTLDAEIRSRNDALRVKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1624 DLNEM-EIQLNHANRLAAESLRNYRNTQGVLKETQLHLDDALRGQEDLKEQ------LAI 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +KL    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELRATLEQTERARKLAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828


>gi|317133380|ref|YP_004092694.1| hypothetical protein Ethha_2469 [Ethanoligenens harbinense YUAN-3]
 gi|315471359|gb|ADU27963.1| hypothetical protein Ethha_2469 [Ethanoligenens harbinense YUAN-3]
          Length = 331

 Score = 44.9 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 57/201 (28%), Gaps = 19/201 (9%)

Query: 3   YPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
           + ++ ++     I +   + +  V+  +        +       HD    SF  N     
Sbjct: 4   FSKEIVQKAKN-ISLLEYLQRKGVEMVKDGRYYRMKE-------HD----SFVVNPETNL 51

Query: 62  YYCFSCHVKG-DHLSFLSALLGCSFIESVQRLAAIA-GVPLPVVDPKIEKKEKIQTDLIR 119
           +   S ++ G + + +L  +   +F+ +V  L+ IA  +PL                   
Sbjct: 52  WIWNSRNISGKNAIDYLERIEKMTFVSAVSELSQIAPDMPLERSQAADTHPPPDDNKSFV 111

Query: 120 LIEVA--TDFFHHSLKNARD--KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175
           L + A         L   R     +  +  + G      E     +       L  H  +
Sbjct: 112 LPQAAPDNRRCFAYLHTHRGILPSVINHFIKAGALYEGAEYHDAVFVGFDDKGLPRHAHK 171

Query: 176 KGFSEEKIIEAGLLIDGDNSA 196
           +  +              +  
Sbjct: 172 RSTNTYLPKTGTDGKRKHDRW 192


>gi|194386386|dbj|BAG59757.1| unnamed protein product [Homo sapiens]
          Length = 1236

 Score = 44.9 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 203 EDKAKLKELEKHKIQLERVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 322

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 383 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 442

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 443 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 502

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLERVQEWKSKMQEQQADLQRRLKEARKEA 246

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 306

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 361 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 404



 Score = 38.3 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-------LYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 179 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLERVQEWKSKMQEQQADLQRR 238

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 239 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 293


>gi|118104637|ref|XP_424414.2| PREDICTED: similar to coiled-coil domain containing 100 [Gallus
           gallus]
          Length = 987

 Score = 44.9 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 91/296 (30%), Gaps = 28/296 (9%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                     E L  ++   +++  + + +        +       L       +D++  
Sbjct: 636 CASEKQTEPRETLEYKAALELELWKEMQEDIFENQLKKKEMARMQALAEEWKK-RDEERE 694

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + + +      Q   T      R  +      + +   + L        +  +   
Sbjct: 695 ALVKKKVAEYTALEEQLQKTLRDLDKRERQLLTAESEIQRVKKELQAEHEQNKQELQDSV 754

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            R                +   E + I+    +  ++   L+    E KY + E+  Q+ 
Sbjct: 755 RRTRE---------ECAHQVELERSKIKQLGEDRLRIQQQLYE--AENKYKILEKEFQQY 803

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDV-------RQGYQQALALYKRFRLLSRQ 594
            E+   +   QL  ++    L  A  E  +          +Q + +AL    R +   ++
Sbjct: 804 KEQQSSKPEIQLQSEINLLTLEKAELERKLESATKSKLHYKQQWARALKELARLKQREQE 863

Query: 595 --KEEIEKQIAQVT-------AKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
                ++KQ  ++        A  E E        L ++  ++++++ QE   + F
Sbjct: 864 SAMARLKKQQQELEHMRLCYLAAEEKELGKTDRQELEDIRNELNRLKQQEEERKQF 919


>gi|72080971|ref|YP_288029.1| replicative DNA helicase [Mycoplasma hyopneumoniae 7448]
 gi|71914095|gb|AAZ54006.1| replicative DNA helicase [Mycoplasma hyopneumoniae 7448]
          Length = 463

 Score = 44.9 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 59/172 (34%), Gaps = 15/172 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            EA ++  L+ +P  +      L    +    L ++   + +   + K      + Q L 
Sbjct: 11  LEAFIISFLLANPEKVVNFIDILNPDDFSVRNLAEIVRAIKNVANQTKNPEVTLVLQELE 70

Query: 543 ERGFGELLK-------------QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
             G  + +               L  ++ +  L     +  + D+++    +        
Sbjct: 71  RTGKLDQIGGRNYIVNLYNSNFSLPSEITE-HLRIINEKKTLRDLKKIVDDSTKELNSGT 129

Query: 590 LLSRQK-EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             S +   EI ++I  +    + E    +  I  ++   + ++ + + +I+G
Sbjct: 130 KFSYEITTEILQKINLLNFNTKNETFIPIYEIAVQIFAYLTELRTSQNLIKG 181


>gi|300311394|ref|YP_003775486.1| replicative DNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300074179|gb|ADJ63578.1| replicative DNA helicase protein [Herbaspirillum seropedicae SmR1]
          Length = 478

 Score = 44.9 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 69/201 (34%), Gaps = 19/201 (9%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
            +      +   ++       E ++L  L+   A        ++   +   + + ++  +
Sbjct: 15  QKESSDPQIDALRVPPHSIEAEQSVLGGLLLDNAAWDRIADFVSAEDFYRYDHRIIFEHI 74

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                  K      +++ +   G  E +  L     +A   +  + ANI    +  +   
Sbjct: 75  VKLINSTKPADVITVYEAMSTSGKAEEVGGL--VYLNALAQNTPSAANIRRYAEIVRDRG 132

Query: 583 ALYK---------------RFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVH 625
            L K               + + +    +E E +I  +  +G   ++    +  +L +V 
Sbjct: 133 ILRKLITVADEISGNAFNPQGKDVKSMLDEAESKIFAIAEEGSRGSQGFMEIQPLLTQVV 192

Query: 626 IQIHQIESQEAMIEGFGKMSG 646
            +I ++ ++++  +  G  +G
Sbjct: 193 ERIDELYNRDSSSDITGVPTG 213


>gi|229175259|ref|ZP_04302774.1| hypothetical protein bcere0006_43390 [Bacillus cereus MM3]
 gi|228608091|gb|EEK65398.1| hypothetical protein bcere0006_43390 [Bacillus cereus MM3]
          Length = 786

 Score = 44.9 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREKVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVINQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNDE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQIES 633
            +           EK          +  ++ Q+  
Sbjct: 565 RDEKLLKAQKEGEEKVEAAKKEAEGIIRELRQLRK 599


>gi|197294762|ref|YP_001799303.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma
           australiense]
 gi|171854089|emb|CAM12066.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma
           australiense]
          Length = 427

 Score = 44.9 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 53/160 (33%), Gaps = 27/160 (16%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E ALL TL+ +P  +      +    + N + + ++  +    ++ +      +   L 
Sbjct: 4   AERALLGTLLLNPEKMDAVINLVNTNNFSNPKNRCIFETMKRLKLQNREIDYVTVGSVLD 63

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
              +   +  +D  +    +      A   +  + Y   +      R L    +++  ++
Sbjct: 64  NNLYK--IGGIDYLIELVEM------APASEYLETYIDLIKENALKRDLLGLIKQLPTEL 115

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           +         K+  + + L  V  Q          +EGF 
Sbjct: 116 S---------KSKNIHNYLQTVKNQ----------VEGFM 136


>gi|71893992|ref|YP_279438.1| replicative DNA helicase [Mycoplasma hyopneumoniae J]
 gi|71852119|gb|AAZ44727.1| replicative DNA helicase [Mycoplasma hyopneumoniae J]
 gi|312601586|gb|ADQ90841.1| Replicative DNA helicase [Mycoplasma hyopneumoniae 168]
          Length = 463

 Score = 44.9 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 59/172 (34%), Gaps = 15/172 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            EA ++  L+ +P  +      L    +    L ++   + +   + K      + Q L 
Sbjct: 11  LEAFIISFLLANPEKVVNFIDILNPDDFSVRNLAEIVRAIKNVANQTKNPEVTLVLQELE 70

Query: 543 ERGFGELLK-------------QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
             G  + +               L  ++ +  L     +  + D+++    +        
Sbjct: 71  RTGKLDQIGGRNYIVNLYNSNFSLPSEITE-HLRIINEKKTLRDLKKIVDDSTKELNSGT 129

Query: 590 LLSRQK-EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             S +   EI ++I  +    + E    +  I  ++   + ++ + + +I+G
Sbjct: 130 KFSYEITTEILQKINLLNFNTKNETFIPIYEIAVQIFAYLTELRTSQNLIKG 181


>gi|302775366|ref|XP_002971100.1| hypothetical protein SELMODRAFT_171959 [Selaginella moellendorffii]
 gi|300161082|gb|EFJ27698.1| hypothetical protein SELMODRAFT_171959 [Selaginella moellendorffii]
          Length = 618

 Score = 44.9 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 51/404 (12%), Positives = 111/404 (27%), Gaps = 52/404 (12%)

Query: 207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN---------FFGALNY 257
           +    ++RG       R   +        +     + + K +           F+ A   
Sbjct: 95  VIKWFATRGISQKVLQRNRVEQIYSGSELAIAFPYYKENKIIDCKYRTIPEKRFWKARGA 154

Query: 258 LQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL------------TEY 305
            +++            +++VEG MD LS+ +AG+ N VS    A              + 
Sbjct: 155 ARRTFYGLEDIKGRDEVVIVEGEMDKLSMEEAGIINCVSVPDGAPVKAADGETPDPEEDK 214

Query: 306 QLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           +   LW          RI L  D D PGL  A +                 V   + +D 
Sbjct: 215 KFSYLWDCKEQFGKVTRIFLATDADGPGLALAEELARRFGRERCWRVNWPVVDGKQLKDA 274

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRE---------TENRSFNTPDERAELEIHLKN 410
           +  +   G  A  ++I +S         +            +      +  +     L  
Sbjct: 275 NEVLLTLGPEALREVIAKSELYPIRGLFQFSNFFKEIDDYYHMRVEEAEGASTGWKGLDE 334

Query: 411 CINHIKDQ--KLRYYYSQAIRDRLQQLFQKYITEHSGY----GRYWKKNARHRDQKGPSQ 464
               +  +   +    +    + +  L                   K     R       
Sbjct: 335 YYTVVPGELTIVTGVPNSGKSEWIDALVCNLNRSKGWSFALCSMENKVTDHARKLIEKHY 394

Query: 465 RLMQSSLVKGKLSKKPSLREAAL-LLTLINHPAILQEQYQELADIRYDNNELQK------ 517
           R           + + +  E A  L  L NH  +++ + ++L    +  +  +       
Sbjct: 395 RKPFFEAKYSNSTPRLTPEEFAAGLEWLDNHFYLIRCENEKLPSADWVLDRAKAAVQRYG 454

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
           +   +   + E      +    +       ++L ++ R  +   
Sbjct: 455 IRGLVIDPYNE---LDHQRSSSQTETEYVSQILTKIKRFAQHHD 495


>gi|299141677|ref|ZP_07034813.1| toprim domain protein [Prevotella oris C735]
 gi|298577013|gb|EFI48883.1| toprim domain protein [Prevotella oris C735]
          Length = 341

 Score = 44.9 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 98/355 (27%), Gaps = 69/355 (19%)

Query: 44  PFHDEKTPSFHCNDSKGFY-------YCFS----CHVKGDHLSFLSALLGC----SFIES 88
           PF ++  PS H   ++G Y         F     C   G+  + +  L       +F E 
Sbjct: 34  PFREDSRPSCHLYANRGGYGNGQYYLQDFGDSSFC---GNCFAIVGRLCNINPKTNFREV 90

Query: 89  VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148
           +Q +    G+ +       E++ +                HH L   +      Y     
Sbjct: 91  LQVIDRDLGLGI-----FDEQRSE----------------HHVLMKRKATPSQKYKCSSI 129

Query: 149 IDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208
                +    + +  +        L        K I +                      
Sbjct: 130 ASFEVVTQPFMPWEEEYWGQYGIGLSTLERYNVKSISS---------------------C 168

Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG---KNLYNFFGALNYLQKSIRKD 265
             + S G   A  G          + +     ++      + +Y       Y+     ++
Sbjct: 169 TFKKSSGGNFAVYGSKAIPTYGYFFDDGCRLKIYRPKAKTRFMYAGHFPKPYI---FGRE 225

Query: 266 VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKLSPRIVLCFDGD 324
                 + + +  G  DV+SL   G   +  +     + E  +  L K   RI+  +D D
Sbjct: 226 QLPEEGALVFVTGGEKDVMSLSAHGFPALTFNSETANIPEDVMDELSKRFLRIIFLYDTD 285

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVL-LSRGEDPDSFIR-CYGKTAFEKLIVE 377
           + G R +   I               +      +D   F R  +     + +I +
Sbjct: 286 ETGQRESALRIQQYGEKYNVQKLDLPLSGEKSEKDISDFFRLGHTAEELQAMIEK 340


>gi|282900031|ref|ZP_06307990.1| DnaB helicase [Cylindrospermopsis raciborskii CS-505]
 gi|281195063|gb|EFA70001.1| DnaB helicase [Cylindrospermopsis raciborskii CS-505]
          Length = 724

 Score = 44.9 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 47/139 (33%), Gaps = 10/139 (7%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L  +    E A+L  ++  P  +      L    +  N  ++++        + K    
Sbjct: 14  QLPPQNIEAEEAILGGILLDPEAMGRIRDRLLPQAFYVNAHREIYQAAIILNNQNKPTDL 73

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L        L ++  + + A L   T  +  +DV              + L RQ
Sbjct: 74  LSLTEWLTNNDK---LSRIGGRNKLANLIDRTVSSVNIDVLADLVMD-------KYLRRQ 123

Query: 595 KEEIEKQIAQVTAKGEAEK 613
             +   +I ++  + + E 
Sbjct: 124 LIKAGNEIVKLGFEAQTEL 142


>gi|148688184|gb|EDL20131.1| coiled-coil domain containing 18, isoform CRA_b [Mus musculus]
          Length = 1450

 Score = 44.9 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 25/253 (9%), Positives = 85/253 (33%), Gaps = 4/253 (1%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            R+ +       +E +++E  + +     +++ ++      + D+ +   +K         
Sbjct: 863  RQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELE 922

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            R          +    +  +++ L       K +LR+   L  ++    +  E  ++   
Sbjct: 923  RLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTT 980

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            I+    EL++    +     E          +    +     +  LD  +R+        
Sbjct: 981  IKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1040

Query: 568  EANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
               +   + +   +     K+   L+ + +  ++Q+ +        +   +  +  E+  
Sbjct: 1041 IIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNE-QEISQLKKEIER 1099

Query: 627  QIHQIESQEAMIE 639
               +++  E++I+
Sbjct: 1100 TQQRMKEMESVIK 1112


>gi|327267205|ref|XP_003218393.1| PREDICTED: rootletin-like [Anolis carolinensis]
          Length = 1922

 Score = 44.9 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 74/231 (32%), Gaps = 17/231 (7%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +  +    + + +  Q+L                +    ++        +++   + + +
Sbjct: 1044 EAEKNLLLEKVSELQQELLASRSEVDRVKLEAQSRQEHDKNIVSSITSELRTFQSQFEDA 1103

Query: 478  KKPSLREAALL----LTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYF 532
                 +E   L      L      + ++ ++L A +R   +    L   L     + +  
Sbjct: 1104 MAAHQKEVKRLNEHVKELAREKEHVVKEAEQLKAQLRLAEDTHSGLRKELGEL--QHRLQ 1161

Query: 533  LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              EEI     ++   E+ + +  + R+      +       +++   + L+L +      
Sbjct: 1162 ETEEIRAH-QQKELQEIHRAVADESREKEALQKSNTDLRAAIKKAENERLSLQRTKEEKE 1220

Query: 593  RQKEEIEKQIA---------QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++   +E+  A         +   +   +        L E+  Q+  ++S+
Sbjct: 1221 QKIAVLEEAKAAIASEVGELRANLREVDKSRMEARRELQELRRQLKALDSE 1271


>gi|309360901|emb|CAP30592.2| CBR-MYO-5 protein [Caenorhabditis briggsae AF16]
          Length = 1979

 Score = 44.9 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 34/285 (11%), Positives = 81/285 (28%), Gaps = 9/285 (3%)

Query: 353  LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
            +   +DP             K     L  ++   + ++ +        +   ++      
Sbjct: 1139 MKDNQDPRLRRLEMKCNWSWKSWETDLMKLEEQLRHKSSSTRREAELAKLRQDLEDAAIN 1198

Query: 413  NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
                   LR  ++ A+ +   QL               +KN + R+     Q     +  
Sbjct: 1199 AETSMAALRKKHNDAVAELSDQLDTVQKMR---GKLEREKNDKQREVDELQQSADVEAKQ 1255

Query: 473  KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
            +    +     EA L    +      +   +        ++E   L   L     +    
Sbjct: 1256 RQNCERMAKQLEAQLTDITLKSDEQARLIQELTMSKNKIHSENHDLNRQLEDAESQLSAL 1315

Query: 533  LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               +  Q          L Q  R+ +      +  +     +R+  ++          + 
Sbjct: 1316 NRIKQQQHNQMEELKRTLDQETRERQSLHSQVSNYQLECEQLRESLEEEQDA---KTDVQ 1372

Query: 593  RQKEEIEKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIESQ 634
            RQ  +   +I Q  AK E E   +   L     ++  ++ +++ Q
Sbjct: 1373 RQLSKANSEIQQWRAKFEGEGVTRAEELEETRRKLTHKVQEMQEQ 1417



 Score = 40.6 bits (93), Expect = 0.82,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 82/242 (33%), Gaps = 28/242 (11%)

Query: 400  ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
            ++A+LE  + N  + + D++ +       + +++Q  +      S      KK    +  
Sbjct: 926  QKADLEKQMANLNDQLCDEEEKNAALVKQKKKIEQDNEGLKKTVSDLETTIKKQESEKQS 985

Query: 460  KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
            K    R +Q  +           +E               +  +E+          +KL 
Sbjct: 986  KDHQIRSLQDEIQSQDEVISKLNKEK--------------KHQEEV---------NRKLL 1022

Query: 520  SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR--QG 577
              +     E K     +   +L      EL   L+R+ R              +++  Q 
Sbjct: 1023 EDI--QAEEDKVNHLNKTKAKLEST-LDELEDTLEREKRGRQDCEKQKRKVEGELKIAQE 1079

Query: 578  YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
              + L  +K  +    +K++IE    Q   + E    A L   + E+  +I ++E +  M
Sbjct: 1080 LIEELNRHKHEQEQVLKKKDIELNSLQSRLEDEQSLVAKLQRQIKELLARIQELEEEPTM 1139

Query: 638  IE 639
             +
Sbjct: 1140 KD 1141


>gi|256000843|gb|ACU51762.1| RE63495p [Drosophila melanogaster]
          Length = 1094

 Score = 44.9 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 31/249 (12%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            E   ++T +E       L +    + D +      + + +    LFQ          R 
Sbjct: 398 MEETHYSTNEELQATLQELADLQTQLTDTQTEN---ERLAEEKDALFQSLC-------RQ 447

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
            +K    R Q    Q L+     +       S RE  LL        +++   +E   + 
Sbjct: 448 TEKLNESRTQISTLQELLLRDTKQPAPEVSASEREQKLL-------DLIKTSQEEREAVL 500

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               EL    + +                 +L  +   E +  LD Q+  A       EA
Sbjct: 501 LKQEELGAELAEMKQAREAG----------QLELQRQRERIALLDSQLDAANAERRQGEA 550

Query: 570 NIVDVRQGYQQALALYKRFRLLSR----QKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
                 +   Q      R   L      + EE+E  +++      +E   +       + 
Sbjct: 551 QFSQAMEEISQRAIEISRLSTLLENARSKIEELEADLSRGDKTDLSEVLDVARKEKDALE 610

Query: 626 IQIHQIESQ 634
            ++ +++ Q
Sbjct: 611 ERVAELQDQ 619


>gi|225444055|ref|XP_002264075.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 902

 Score = 44.9 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 60/557 (10%), Positives = 162/557 (29%), Gaps = 38/557 (6%)

Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS 168
           + ++++  L  L   A + F    K     R    +      S       L      +++
Sbjct: 135 EHDRLRESLGNLKSSAREQFKKLQKEISGIRGSSPMRRINSSSEVGLCGILQEKASEKWT 194

Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
             +       +    +   +      S  S   +     F        VI    R+L + 
Sbjct: 195 DVDKTIDTLMTTLDTVYEQVNNIVYLSKASVSEWLQDWEFQ-GEIEAMVIEHSIRSLREE 253

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
              +  N  +   F    ++Y         +     D         +L       L    
Sbjct: 254 FEERLWN--QNAHFCGNGSVYWPEKTKEISRLRQELDAISK-----MLSTSEFGQLISHG 306

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
           +       +       +  ++L          ++G+     +     + +    +  +  
Sbjct: 307 SCEIGEEWNNTKGTDHFHRKVLSNHVSPATSVWEGNGKHEESKTSMPENLESSSLLKHMS 366

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
              L +  +   + +R   ++  +++  + + L     K    +       E   +   +
Sbjct: 367 KEELFNHFKTEMTKMRRNHESQVQEMAEQYISLKGKFLKERGSSLPLRKDKEFDAMRKKI 426

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              I  + D  +      A  +  + L        +      +      D+K   + L  
Sbjct: 427 PEVILKLDDILVENEKLPAFSNNAESLGSLKDRLDTLLSENHQLRDSLTDRKKEVRYLST 486

Query: 469 SSLVKGKLSKKPSLREAALLLTL------INHPAILQEQYQEL----------------A 506
              V  +   + SL EA LL  +      I    I     +++                 
Sbjct: 487 QLSVAAEKMSQHSLAEAKLLKIIGNLKSAIEDAKIEASISEDVNKCILSEVTNQIKCDTE 546

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFL-----PEEIHQRLCERGFGELL-KQLDRQVRDA 560
           +   ++  +Q+++  +  +  +           +   + +  +G   ++ +++ +     
Sbjct: 547 ESNMESTLMQQIYEVILREAAQNAETTSKYEIEDSDMEFIIMQGLSAIIYREVMKDAEAK 606

Query: 561 -GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK-GEAEKTAILI 618
             + +   +           + +   K  RL   +KE ++++I  + A   E E++A+ I
Sbjct: 607 LNIMNVKYDCANEARVSIEIKVVEKEKALRLEFDEKERLKQEIILLEASLEEKERSALEI 666

Query: 619 SILHEVHIQIHQIESQE 635
           +       +  ++ SQE
Sbjct: 667 ADALVKEKEQFELASQE 683


>gi|217039390|gb|ACJ76854.1| DNA primase [Streptococcus agalactiae]
          Length = 105

 Score = 44.9 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 2/102 (1%)

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                +   I        +  Y   + + L       + +     R + ++ +       
Sbjct: 6   AYVEKIAKLIAKSPSITAQNSYITKVAELLPDFDYFQVEQSVNNERLYHRSQQQASPSVQ 65

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
           +   +Q  L +       +  E  L   L+NHP +L E    
Sbjct: 66  TSATVQ--LPQTGKLSAITKTEMQLFHRLLNHPYLLNEFRNR 105


>gi|148688183|gb|EDL20130.1| coiled-coil domain containing 18, isoform CRA_a [Mus musculus]
          Length = 1455

 Score = 44.9 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 25/253 (9%), Positives = 85/253 (33%), Gaps = 4/253 (1%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            R+ +       +E +++E  + +     +++ ++      + D+ +   +K         
Sbjct: 868  RQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELE 927

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            R          +    +  +++ L       K +LR+   L  ++    +  E  ++   
Sbjct: 928  RLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTT 985

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            I+    EL++    +     E          +    +     +  LD  +R+        
Sbjct: 986  IKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1045

Query: 568  EANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
               +   + +   +     K+   L+ + +  ++Q+ +        +   +  +  E+  
Sbjct: 1046 IIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNE-QEISQLKKEIER 1104

Query: 627  QIHQIESQEAMIE 639
               +++  E++I+
Sbjct: 1105 TQQRMKEMESVIK 1117


>gi|126277707|ref|XP_001377867.1| PREDICTED: similar to Cingulin-like 1 [Monodelphis domestica]
          Length = 1316

 Score = 44.9 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 89/278 (32%), Gaps = 10/278 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y +    +L      L +   + E    +     +   L           +D+ 
Sbjct: 977  QNQLDEYKEKNRRELAEMQRQLKEKTMEAEKSRLTVIKMQDEMRLMEEELQDYQRAQDEA 1036

Query: 420  L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L  R    Q ++D   +L  K   +     +  +   +    +        +S +     
Sbjct: 1037 LTKRQLLEQTLKDVEYELETKSHLKEDRSRQVKQMEDKISQLEMELDEERNNSDLLSDRI 1096

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLP 534
             +   +   +   L+   A+ Q+   +   +   N +L+     L   +    E      
Sbjct: 1097 TRSREQIEQMRSELLQERAVRQDLECDKISLERQNKDLKSRMVHLEGSYRSSKEGLVVQM 1156

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLL 591
            E     L +R   E   + + Q+ +  L     E  +    +      Q   L  R + +
Sbjct: 1157 EARISELEDRLENEERDRANLQLTNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAM 1216

Query: 592  SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             RQ EE E++I ++ +    +K    +    +V+ Q+ 
Sbjct: 1217 KRQVEEAEEEIDRLESS--KKKLQRELEEQMDVNEQLQ 1252


>gi|223932993|ref|ZP_03624987.1| conserved hypothetical protein [Streptococcus suis 89/1591]
 gi|223898310|gb|EEF64677.1| conserved hypothetical protein [Streptococcus suis 89/1591]
          Length = 358

 Score = 44.9 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          P HD    SF        +  FS  ++GD + F+  + G +F E+V  L
Sbjct: 34 PDHD----SFRIFADTNTFKWFSRDIQGDVIDFVQLVAGVTFKEAVSYL 78


>gi|262282542|ref|ZP_06060310.1| ABC transporter ATPase [Streptococcus sp. 2_1_36FAA]
 gi|262261833|gb|EEY80531.1| ABC transporter ATPase [Streptococcus sp. 2_1_36FAA]
          Length = 631

 Score = 44.9 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 17/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++   +   AG        +    ++  ++   L +R   L  Q E+++ QI+
Sbjct: 532 KAEQEALRE---ETAQAGPDKPAPANDYQLQKENQKEQRRLARRLEQLEAQIEDLDSQIS 588

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
           Q+    EA   A     L E   QI Q+ +  +EAM+E
Sbjct: 589 QLQEAMEATNDA---GELMESQQQIDQLTAAQEEAMLE 623


>gi|161506648|ref|YP_001576596.1| replicative DNA helicase [Lactobacillus helveticus DPC 4571]
 gi|160347637|gb|ABX26311.1| Replicative DNA helicase [Lactobacillus helveticus DPC 4571]
          Length = 464

 Score = 44.9 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 36/122 (29%), Gaps = 3/122 (2%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +     S  E A+L  +   P  + +    +    +     Q ++  +      +    
Sbjct: 6   SQQIPHDSDAEKAVLGAIFIDPEAIADASAVVQPEDFYERANQIIYQAMLDLSDREDAID 65

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  +   L +      L  +      + L  AT  A  V          AL +R    S+
Sbjct: 66  PLTLQDELNK---RNQLDDIGGISYVSELALATPTAAHVTYYAQIVHRKALLRRLISASQ 122

Query: 594 QK 595
           + 
Sbjct: 123 KI 124


>gi|332022213|gb|EGI62528.1| STE20-like serine/threonine-protein kinase [Acromyrmex echinatior]
          Length = 1701

 Score = 44.9 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 97/277 (35%), Gaps = 24/277 (8%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-RYYYSQAIRDRLQ 433
                    D +++++             +    L       KDQ+  R+   + I +R  
Sbjct: 1178 DENGKVYDDQIFRKQELRELKMLQKMEQKQYQDLSQKAQFNKDQQEKRFEQERQILERSA 1237

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI- 492
            +   + +           +  +  D +  S+++      + K  ++   +E  LL   I 
Sbjct: 1238 EADLEALARQQRQQIERAEAQQEVDLRVSSKKIRSEQERELKQFREGLKQELRLLKQEID 1297

Query: 493  -----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ------RL 541
                    +  + + ++L      + E +KL+        E        +         L
Sbjct: 1298 LMPKDKRKSTFKIRKEKLEAE---HEEREKLF---LEKLNESHEMSLRRLSDSHREKIAL 1351

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEA--NIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             ER F +  +QL R  R+A +W            + +   + +   +R ++L R ++E+E
Sbjct: 1352 MERQFLQQKQQLMRG-REAAIWEQEERQIHERQQLLKKQLKDIFFLQRHQMLIRHEKELE 1410

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
             Q+ ++  + E E           +  +I  +++++E
Sbjct: 1411 -QMKRMNQRKEEELIKRQTVERRNLPKRIRNEMKARE 1446


>gi|296213076|ref|XP_002807192.1| PREDICTED: LOW QUALITY PROTEIN: citron Rho-interacting kinase-like
           [Callithrix jacchus]
          Length = 2083

 Score = 44.9 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 36/299 (12%), Positives = 95/299 (31%), Gaps = 40/299 (13%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
             +   +   EKL         +  K        ++ + + +    ++   N +KD    
Sbjct: 664 QAKERAERELEKLQNREDSSEGIRKKLVEAEERRHSLENKVKRLETMERRENRLKDDIQT 723

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+               +         +++ + + K       
Sbjct: 724 KSQQIQQMADKILELEEKHREAQVSAQHLEVHLKQKEQHYEEKIKVLDNQIKK------- 776

Query: 481 SLREAALLLTLIN-HPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            L +   L  ++  H     E+ + L++    I   +++++ L   +       K     
Sbjct: 777 DLADKETLENMMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANS 836

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALAL 584
            +  +   +   E++ +L +Q       +   EA    + +  +           + L L
Sbjct: 837 SLFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKNRLLEL 896

Query: 585 YKRFRL-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             R R            L RQ  E++  + +  +     +   L +    +  Q+ Q +
Sbjct: 897 ETRLREVSLEHEEQKLELKRQLTELQLSLQERES-----QLTALQAARAALESQLRQAK 950


>gi|294497454|ref|YP_003561154.1| ATP-dependent chaperone ClpB [Bacillus megaterium QM B1551]
 gi|294347391|gb|ADE67720.1| ATP-dependent chaperone ClpB [Bacillus megaterium QM B1551]
          Length = 867

 Score = 44.9 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 20/207 (9%), Positives = 69/207 (33%), Gaps = 10/207 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI +     R +++          +  +++    + ++    ++ + A++   +   
Sbjct: 324 YRQYIEKDPALERRFQQVLVEEPSVEDTISILRGLKERFEIHHGVNIHDRAIVSAAVMSD 383

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK---- 551
             + +++     I   +     + + + S   E        +   + E    +       
Sbjct: 384 RYISDRFLPDKAIDLIDEACATIRTEIDSMPSELDEVTRRVMQLEIEEAALSKETDQAST 443

Query: 552 -QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            +L+   ++        +   +   +  Q    +      L + K ++E    +   K +
Sbjct: 444 TRLEAIRKEVSDLKERADTMKLQWEKEKQSIQTVQDVREQLEKAKRDLE----EAEGKYD 499

Query: 611 AEKTAIL-ISILHEVHIQIHQIESQEA 636
             K A L    +  +  ++ Q+E   A
Sbjct: 500 LNKAAELRHGRIPALEKELKQLEETAA 526


>gi|261377665|ref|ZP_05982238.1| replicative DNA helicase [Neisseria cinerea ATCC 14685]
 gi|269145932|gb|EEZ72350.1| replicative DNA helicase [Neisseria cinerea ATCC 14685]
          Length = 468

 Score = 44.9 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 14/168 (8%)

Query: 475 KLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            L       E ++L   ++ +PA        ++   +  +E + ++  +     E +   
Sbjct: 18  SLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIAKLINESRPAD 76

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L         ++L+       L S           + Y + +    R R + R
Sbjct: 77  VITVQEDLQRN------EELEAAGGFEYLISLAQNTPSAANIRRYAEIV----RERSIMR 126

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           Q  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 127 QLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 172


>gi|157165362|ref|YP_001466596.1| replicative DNA helicase [Campylobacter concisus 13826]
 gi|112800749|gb|EAT98093.1| replicative DNA helicase [Campylobacter concisus 13826]
          Length = 470

 Score = 44.9 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 52/162 (32%), Gaps = 8/162 (4%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A+L ++I +   L E +  +    +      +++  +              I  +L E
Sbjct: 20  ERAILSSIIANNDALGEIFDTINAGDFYLKAHAQIYKAMVDCLNGDVPIASTFIKNKLGE 79

Query: 544 RGFGELLKQLDRQVRDAGLW---SATTEANIVDVRQGYQQALALYKRFRLLSRQK-EEIE 599
                ++  +        +    +   E +I          +         SR   +E+ 
Sbjct: 80  SYDDNVMASILATNSIIDIQRYANELKEKSIKRSLVKIAHDIPSKVNEDKASRDMVDELS 139

Query: 600 KQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           ++   +   +  G    +  +I  L  VH+Q     ++  +I
Sbjct: 140 QEFYSLVDGSGTGSIRDSEDIIKSLI-VHMQKQAALNERDII 180


>gi|55980409|ref|YP_143706.1| hypothetical protein TTHA0440 [Thermus thermophilus HB8]
 gi|55771822|dbj|BAD70263.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 447

 Score = 44.9 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            + EL  L   +       K        +    R   E L+ L+ ++R+A    A     
Sbjct: 129 ASRELAALREEVARLEARGKALEEALRAREAEVRAKEEALRALEARLREAEAELAQARKE 188

Query: 571 IVDV----RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
              +     +     +AL  R   L R +E +E++ +++      E  A +   L E   
Sbjct: 189 REALLGERERLEADLVALQGRVLDLRRSREVLEEEASRLR-----EALARVRQELAEEER 243

Query: 627 QIHQIESQEAMIEG 640
           ++  +  Q  ++EG
Sbjct: 244 RVQGLLVQARVLEG 257


>gi|41529157|dbj|BAD08419.1| putative a-helix coiled-coil rod homologue [Sus scrofa]
          Length = 347

 Score = 44.9 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 80/227 (35%), Gaps = 20/227 (8%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL--REA 485
           +  RL    +K  T      R        ++   P     + +L   +L ++ +    E 
Sbjct: 29  LSARLSYAVRKVHTIRGLMARKLALAQLRQESCPPPPPATEMNLELEQLREERNRLDAEL 88

Query: 486 ALLLTLIN------------HPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYF 532
            L   +I                 L E  Q+L  +++     L  L   L +    Q+  
Sbjct: 89  QLSAHIIQQEVGRAREQGEVERQKLSEVAQQLEQELQRTQESLASLGLQLEAARQGQQES 148

Query: 533 LPEE--IHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
             E   + Q L ++       L +++           + +E  + + R+ + +A+   ++
Sbjct: 149 TAEAAGLRQELTQQQEIYGQALQEKVAEVETRLREQLSESERRLNEARREHTKAVVSLRQ 208

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +  + +++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 209 MQRKATREKERNQELRRLQEEARKEEGQRLTQRLKELERDKNLMLAT 255


>gi|188997509|ref|YP_001931760.1| ATPase AAA-2 domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932576|gb|ACD67206.1| ATPase AAA-2 domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 994

 Score = 44.9 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 8/137 (5%)

Query: 505 LADIRYDNNELQKL-----WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +   ++ +  +  L        L   +   +    E   + L E+     L     +   
Sbjct: 518 IPARKFPDKAIDALDQACARKKLKLVYASPEVIELERKIKMLDEQIIQASLDGDYEKEAK 577

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
             +  A  E  + D++    ++     +   L RQ EEIEKQI   + KG+ EK A    
Sbjct: 578 LKIEKANLEKQLKDLKT---KSSNERTKLEELQRQLEEIEKQIEFYSQKGDYEKEAEYKI 634

Query: 620 ILHEVHIQIHQIESQEA 636
              ++  +I  ++ + A
Sbjct: 635 KKAQIEKEIKALQQKLA 651



 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 65/216 (30%), Gaps = 18/216 (8%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y     +R++ L  +   + +      + +      KG         L       +  + 
Sbjct: 389 YRGEFEERMKSLIDELKKDPNIILFIDELHTIVGAGKGEGASDAGQLLKPALARGEIRVI 448

Query: 484 EAALL----LTLINHPAI---LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            A  L      +   PA+    Q  Y E  DI      L+ L   L              
Sbjct: 449 GATTLDEYRKYIEKDPALERRFQPVYVEEPDIDTTIEILKALRPKLEKHHN--------- 499

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
              ++ ++      K   R +          +A      +   + +        L R+ +
Sbjct: 500 --VKISDKAIEAAAKLTGRYIPARKFPDKAIDALDQACARKKLKLVYASPEVIELERKIK 557

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +++QI Q +  G+ EK A L      +  Q+  ++
Sbjct: 558 MLDEQIIQASLDGDYEKEAKLKIEKANLEKQLKDLK 593


>gi|157933077|gb|ABW05396.1| paramyosin isoform 3 [Dictyocaulus viviparus]
          Length = 876

 Score = 44.9 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 90/273 (32%), Gaps = 23/273 (8%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D   +            E+  +       +    + +   +R  L+    +    + DQK
Sbjct: 166 DQVQKDKHIAEKAAERFEAQSIELSNKVEDLNRHANDLAQQRQRLQAENNDLPKEVHDQK 225

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           ++    Q ++  L Q  ++         R   +      Q       ++++L +   ++ 
Sbjct: 226 VQLDNLQHVKYTLAQQLEEARRRLEDAERERSQLQSQLHQVQLELDSVRTALDEESAARS 285

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +          + +  I Q + +  A++   + E++ L   +     E           
Sbjct: 286 DAEH-----KLNLANTEITQWKSKFDAEVALHHEEVEDLRKKMLQKQAEY---------- 330

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              E     +L+++ +  +      +  E  IVD+ +       L +    L +Q  E++
Sbjct: 331 ---EEQIEIMLQKISQLEKAKSRLQSEVEVLIVDLEKAQNTIAILERAKEQLEKQCAELK 387

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +I ++  +            L  V+ ++ +++
Sbjct: 388 VRIDELNVE-----LEAAQRELRAVNAELQKMK 415


>gi|332828463|gb|EGK01168.1| replicative DNA helicase [Dysgonomonas gadei ATCC BAA-286]
          Length = 508

 Score = 44.5 bits (103), Expect = 0.050,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
           +A +++Q     +        GK+  +    E A+L  L+            L    + +
Sbjct: 3   DANNKNQGRRKPKETNLLPDIGKIQPQARELEEAILGALMLEKDAYSLVSDILKPDSFYD 62

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL------LKQLDRQVRDAGLWSAT 566
              Q ++  +    V Q       + ++L + G  E       + QL  +V  A      
Sbjct: 63  TIHQIIYRAIVDLAVRQAPIDMLTVVEQLKKDGELETVGGPVYIAQLTEKVASAAHIEFH 122

Query: 567 TEANIVDVRQGY---------QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
                                 +A         L ++ E    +I+Q   K +  +   +
Sbjct: 123 ARIIAQKYLARELISFSSTITNKAFDETSDVDDLMQEAESKLFEISQGNVKKDVTQINPV 182

Query: 618 ISILHEV 624
           I     +
Sbjct: 183 IKEALNL 189


>gi|317419273|emb|CBN81310.1| Myosin phosphatase Rho-interacting protein [Dicentrarchus labrax]
          Length = 1595

 Score = 44.5 bits (103), Expect = 0.050,   Method: Composition-based stats.
 Identities = 32/294 (10%), Positives = 74/294 (25%), Gaps = 20/294 (6%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +     TA      +         + E E+R           E  +              
Sbjct: 647 MEVDHPTAMHPASGDKKDNRTSDVQEEIEHRWHQVETTPLREEKQIPINTALGNSGNSDR 706

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
             +  +   L +   +   E     +         +     ++  +   V    +   S 
Sbjct: 707 LPAHELAALLDKELGQKQKELDRLQKQNNVLKEQLENALGREQSAREGYVLQSATAPSSS 766

Query: 483 REA---ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD--FVEQKYFLPEEI 537
            +      L TL  +  +  E   +         +++ L          V++     + +
Sbjct: 767 PQRVPWQRLHTL--NQDLQGELEAQKRKQDLAQQQIRTLKRSYTEAQDAVDRHETDIQAL 824

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             +L      E+L       R         E +     +  +    L  + +    +  E
Sbjct: 825 QTKLASA-MAEILASEQAVARMRNELKLEQERSKEQEEEHGRSETTLRAQLKDSEDRLRE 883

Query: 598 IEKQI------------AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +E  +             Q   +    +   L   L EV  ++   E  +A+ E
Sbjct: 884 VEANLLERNQALRHLERQQALQRDHMREIQRLQERLQEVTARLSATEEGQALKE 937



 Score = 40.6 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 72/215 (33%), Gaps = 9/215 (4%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           ++++L+    +  +   GY            Q+ P QRL   +       +    ++   
Sbjct: 737 LKEQLENALGREQSAREGYVLQSATAPSSSPQRVPWQRLHTLNQDLQGELEAQKRKQDLA 796

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQ-KLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
              +        E    +     D   LQ KL S +      ++         +L +   
Sbjct: 797 QQQIRTLKRSYTEAQDAVDRHETDIQALQTKLASAMAEILASEQAVARMRNELKLEQERS 856

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLLSR----QKEEIE 599
            E  ++  R           +E  + +V        QAL   +R + L R    + + ++
Sbjct: 857 KEQEEEHGRSETTLRAQLKDSEDRLREVEANLLERNQALRHLERQQALQRDHMREIQRLQ 916

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +++ +VTA+  A +    +     +  + H ++  
Sbjct: 917 ERLQEVTARLSATEEGQALKE-ERLRKEKHSMQES 950


>gi|253748462|gb|EET02570.1| Hypothetical protein GL50581_141 [Giardia intestinalis ATCC 50581]
          Length = 1532

 Score = 44.5 bits (103), Expect = 0.050,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 78/203 (38%), Gaps = 16/203 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR---EAALLLTLI 492
           F +      G  R   ++A  +  +  S+     S ++   ++  +LR   E  +     
Sbjct: 236 FNEEKKRIDGKHRAELQSAETQTARLASEIDSLKSRLEQAEAEADALRTRCEEDVDKQKA 295

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
            +   ++    ++A +     E  +  S +F   +  +     ++   L +         
Sbjct: 296 YYDDQIEYLNSQVASLT----EAARSASGMFESELAARDRDITKLSAELRD--------S 343

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           L+R+    G+ +     +  ++ Q  +Q +  L  +   L+ + +E E+ +A++  K   
Sbjct: 344 LEREDYLKGMMNQLKREHKDELEQLRKQNVKDLDAQKSALTEKIKEAERTLAEMLEKNTD 403

Query: 612 EKTAILISILHEVHIQIHQIESQ 634
            + A L++ L E   +   +E Q
Sbjct: 404 GQIADLMAKLKEQEERNACLEKQ 426


>gi|222624231|gb|EEE58363.1| hypothetical protein OsJ_09500 [Oryza sativa Japonica Group]
          Length = 2721

 Score = 44.5 bits (103), Expect = 0.050,   Method: Composition-based stats.
 Identities = 45/422 (10%), Positives = 124/422 (29%), Gaps = 18/422 (4%)

Query: 231  VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
                N              N    +  L+K +    R+       L +   +  ++    
Sbjct: 723  HALENLHSQSQEDFNLVKLNLENTVCELKKEVTSLERKIQIQVQELEQKREEADAMHAQL 782

Query: 291  VQNVVSSLGTALTEYQLRLLWKLSPRIV--LCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
                 + +        L  L   S   V  +  D +    + +    + +  H +     
Sbjct: 783  QDERSNHMQKEAALRALENLHSQSQEEVKQMARDVEHSNKKLSDLENNNLKLHDLSQGLK 842

Query: 349  NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
              V         + ++    +     +   + +V    ++  +       +        +
Sbjct: 843  KTVAELNSMKDSALLQQQKSSEKVSYLEAQVLVVRSEMEKMVQKTQMLDQE-LEHKNKEI 901

Query: 409  KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
                N +++Q  +   ++    RL+ L      E        ++ +    +    +  +Q
Sbjct: 902  SELQNSLQEQVQKCILAETSLLRLEDLHTNSQKEAKTLAHDLERLSEQLTEVENDRLDLQ 961

Query: 469  SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            +   + K +      E  L+L    H    Q   +          E  K  + L  + + 
Sbjct: 962  NISRELKNTISEINSEKDLMLLQQQHSLERQSYLEAQLLDALSEVEENKKEAQLLEENLA 1021

Query: 529  QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALYK 586
             K     ++   L E G   +  +    + +     +  E    ++D+ +   +   L  
Sbjct: 1022 HKNDELNDLQNNLEEEGHKRMHAEAALSMVENLHSKSQEEVGKLVMDLDKLENELSELQG 1081

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQ----IHQIES 633
            R   +     E++  I+ + ++ +A              L+S L ++ ++      ++++
Sbjct: 1082 RNSRMEELSYELQNTISLLNSEKDAALLQQQLSSERACDLMSQLSKIQLELEKAEEKMQT 1141

Query: 634  QE 635
             E
Sbjct: 1142 ME 1143


>gi|124004374|ref|ZP_01689220.1| replicative DNA helicase [Microscilla marina ATCC 23134]
 gi|123990444|gb|EAY29943.1| replicative DNA helicase [Microscilla marina ATCC 23134]
          Length = 492

 Score = 44.5 bits (103), Expect = 0.050,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 11/129 (8%)

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
             +   + EA L   LI  PA + +    L    +     ++++  +   F +       
Sbjct: 13  PPQAIDIEEAVLGAILIEQPAFM-QVIDLLQPDYFYKPAHKEVYQAILELFAQANPVDML 71

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + Q+L + G      +L+     A +   T+  N       +   L      + + R+ 
Sbjct: 72  TVTQQLRQTG------KLEMAGGPAFVMKLTSMVNSSANIVYHAHILV----EQAIKRRL 121

Query: 596 EEIEKQIAQ 604
            EI  +I +
Sbjct: 122 IEISSKIRK 130


>gi|108706311|gb|ABF94106.1| Viral A-type inclusion protein repeat containing protein, expressed
            [Oryza sativa Japonica Group]
          Length = 2702

 Score = 44.5 bits (103), Expect = 0.050,   Method: Composition-based stats.
 Identities = 45/422 (10%), Positives = 124/422 (29%), Gaps = 18/422 (4%)

Query: 231  VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
                N              N    +  L+K +    R+       L +   +  ++    
Sbjct: 729  HALENLHSQSQEDFNLVKLNLENTVCELKKEVTSLERKIQIQVQELEQKREEADAMHAQL 788

Query: 291  VQNVVSSLGTALTEYQLRLLWKLSPRIV--LCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
                 + +        L  L   S   V  +  D +    + +    + +  H +     
Sbjct: 789  QDERSNHMQKEAALRALENLHSQSQEEVKQMARDVEHSNKKLSDLENNNLKLHDLSQGLK 848

Query: 349  NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
              V         + ++    +     +   + +V    ++  +       +        +
Sbjct: 849  KTVAELNSMKDSALLQQQKSSEKVSYLEAQVLVVRSEMEKMVQKTQMLDQE-LEHKNKEI 907

Query: 409  KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
                N +++Q  +   ++    RL+ L      E        ++ +    +    +  +Q
Sbjct: 908  SELQNSLQEQVQKCILAETSLLRLEDLHTNSQKEAKTLAHDLERLSEQLTEVENDRLDLQ 967

Query: 469  SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            +   + K +      E  L+L    H    Q   +          E  K  + L  + + 
Sbjct: 968  NISRELKNTISEINSEKDLMLLQQQHSLERQSYLEAQLLDALSEVEENKKEAQLLEENLA 1027

Query: 529  QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALYK 586
             K     ++   L E G   +  +    + +     +  E    ++D+ +   +   L  
Sbjct: 1028 HKNDELNDLQNNLEEEGHKRMHAEAALSMVENLHSKSQEEVGKLVMDLDKLENELSELQG 1087

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQ----IHQIES 633
            R   +     E++  I+ + ++ +A              L+S L ++ ++      ++++
Sbjct: 1088 RNSRMEELSYELQNTISLLNSEKDAALLQQQLSSERACDLMSQLSKIQLELEKAEEKMQT 1147

Query: 634  QE 635
             E
Sbjct: 1148 ME 1149


>gi|298674126|ref|YP_003725876.1| SMC domain-containing protein [Methanohalobium evestigatum Z-7303]
 gi|298287114|gb|ADI73080.1| SMC domain protein [Methanohalobium evestigatum Z-7303]
          Length = 634

 Score = 44.5 bits (103), Expect = 0.050,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 89/276 (32%), Gaps = 9/276 (3%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K   ++   E    V+    RE      +  ++       L +  N I ++K +   
Sbjct: 194 KKQKEEIDQDREEISKKVNDNDIREIVEERKSIFEKIQNFHRDLNDIYNRINNKKTKIQK 253

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + I + L +       E  G      K    +     + ++      K +++   +L +
Sbjct: 254 KEEIVNELNENLSNLNKEIEGLDVSNYKKKFDQKVNENTSKIESLKEDKAEVNASINLFQ 313

Query: 485 AALLLTLINHPAILQEQYQELADIRYD--NNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           +A L     + +       E  ++  +  +  L+ L     +D         + +++ + 
Sbjct: 314 SAKLKLKNENKSETTCILCEQGNLNINVIDKTLESL-----NDKKRNIESEIQSLNEEI- 367

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                  L  L+ +           E  + D +   +      K    L  +KE+  K++
Sbjct: 368 -AIMKNKLNNLESEKNKKEQEIFRLEHELEDTKSDLKTLRNEVKNDDDLKNEKEQTLKEL 426

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
                + +      ++  + E+  +  +++ +   I
Sbjct: 427 ENEYERLKELAKGDIVKKIDELEAKSSELQEEIGSI 462


>gi|113673505|ref|NP_001038227.1| cingulin [Danio rerio]
 gi|123888142|sp|Q1L8T5|CING_DANRE RecName: Full=Cingulin
 gi|94734554|emb|CAK05370.1| novel protein (im:7137721 ) [Danio rerio]
          Length = 1161

 Score = 44.5 bits (103), Expect = 0.050,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 95/275 (34%), Gaps = 28/275 (10%)

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH----IKDQKLRYY 423
              F  +    + + D   K E E         + +L+   +    +    ++ +  R  
Sbjct: 397 HERFCGVKAPQISVTDSNMKTELEQAFGRNTQLQQQLDKSRRELQENQDQMVELRMDREG 456

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               +R +  QL Q             + ++   D       L +S L++ KL      R
Sbjct: 457 AESRLRQQEDQLAQLQEELRRTLENSPQSDSMQLDLLTVQAELSESQLLRQKLEDTLRQR 516

Query: 484 EAAL--LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           E  L  L   +              ++   + E++ L         EQ     + +   +
Sbjct: 517 ERELTALKGALKD------------EVASHDKEMEALR--------EQFSQDMDALRHSM 556

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEAN-IVDVRQGYQQALALYKRFRLLSRQ-KEEIE 599
                 +L  + +RQ  +A + +   E     +  + +++  +   +  L ++Q K E+E
Sbjct: 557 ETVSQSQLEIEEERQKVNASILAMEEELEGYKEQSEQWKKQFSSANQELLKAQQGKRELE 616

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +++  V  + +   +  ++  L +    + + +S+
Sbjct: 617 EKLLAVVKQTDETDSNSVMKELQQCRDSLKKAQSE 651



 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 92/287 (32%), Gaps = 13/287 (4%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +          I + +  +    ++  +       + R      L++     KD+ +   
Sbjct: 805  QKRLLDRSLDKINKEMESMMGDSRQSVQVLQSQLEEFRDRSRRELQDAQRLSKDRLVELQ 864

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             +QA+    Q+   +   E              ++      + M++ L   + S+    R
Sbjct: 865  RAQALLKTTQEEVSRVKKELLSCTEERDSTQLDKELLSSRLKNMETELQTDRSSQTDRSR 924

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNEL-------QKLWSFLFSDFVEQKYFLPEE 536
            E  LL   +    I  E  +E +     N  +        +L S L  +   +     ++
Sbjct: 925  EIRLLEDKVKTLEI--ELDEEKSGAELLNERITRCREQVDQLRSELMQERSARHDLEMDK 982

Query: 537  IHQRLCERGFGELLKQLDRQVRDAG---LWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                   +     +  +  Q R +    +     +     +R   ++   +    R L R
Sbjct: 983  SALERQIKELKSRIADMGTQSRPSAGVTMLENKVQELEDRLRSEEREKNTIQAAQRRLDR 1042

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            + +++   + Q   +  AE+   L   +  +  Q+ + E +   +EG
Sbjct: 1043 KLKDVTATLDQERNQH-AEQRDQLSLRVKALKRQLDESEGEVERLEG 1088



 Score = 37.2 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 47/412 (11%), Positives = 112/412 (27%), Gaps = 29/412 (7%)

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F++   L+    A   + K         S +  I      D         +  + ++   
Sbjct: 327 FNQSPKLFAPKEAPPAVPKKPVTPDLIKSQTTSIENGNGED------DQTKQAIYNILKE 380

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
            +  +   + + +  I   F G      +   +          G              + 
Sbjct: 381 GSIEKEEAIKRKASLIHERFCGVKAPQISVTDSNMKTELEQAFGRNTQLQQQLDKSRREL 440

Query: 362 FIRCYGKTAFEKLIVESLPLVDML------WKRETENRSFNTPDERAELEIHLKNCINHI 415
                           +   +          + E      N+P   +     L       
Sbjct: 441 QENQDQMVELRMDREGAESRLRQQEDQLAQLQEELRRTLENSPQSDSMQLDLLTVQAELS 500

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           + Q LR      +R R ++L             + K+    R+Q       ++ S+    
Sbjct: 501 ESQLLRQKLEDTLRQRERELTALKGALKDEVASHDKEMEALREQFSQDMDALRHSMETVS 560

Query: 476 LSKKPSLREAALL-LTLINHPAILQEQYQELAD----IRYDNNEL-------QKLWSFLF 523
            S+     E   +  +++     L+   ++           N EL       ++L   L 
Sbjct: 561 QSQLEIEEERQKVNASILAMEEELEGYKEQSEQWKKQFSSANQELLKAQQGKRELEEKLL 620

Query: 524 SDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +   +        + + L +      +   +L++Q  +        ++      +   + 
Sbjct: 621 AVVKQTDETDSNSVMKELQQCRDSLKKAQSELEKQKAETLKKQEELKSATRASEKRETEL 680

Query: 582 LALYKRF-RLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHEVHIQIHQ 630
            A   R    L ++KEE+ K I +       +  K       L E + ++ +
Sbjct: 681 KAEIDRLINQLKKEKEELSKAIEKTQQPLVSDQTKDPESNLELQEANARLRE 732


>gi|32267157|ref|NP_861189.1| replicative DNA helicase [Helicobacter hepaticus ATCC 51449]
 gi|32263210|gb|AAP78255.1| replicative DNA helicase [Helicobacter hepaticus ATCC 51449]
          Length = 487

 Score = 44.5 bits (103), Expect = 0.050,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 55/171 (32%), Gaps = 16/171 (9%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +  +     E  +L ++   P   +E   EL    +     + ++               
Sbjct: 2   QQQEHIISIEKIVLSSIFFSPEKFEEISAELQADDFLYPAHRDIFDMCVYLNKCNLPIDT 61

Query: 535 EEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
           E I  R     +   E L ++      A + +  +E       +    +LA + R + L 
Sbjct: 62  ELILTRKPSHKKISQEELLEITALNPIANIEAYVSEI-KEASIKRELHSLANFLREKSLD 120

Query: 593 RQ------KEEIEKQIA-------QVTAKGEAEKTAILISILHEVHIQIHQ 630
            Q       +E+E+++        Q       E    ++  L E+  + +Q
Sbjct: 121 MQESVEDIIDEVERKLNDVALGKPQDNVMNAHEMAIGVLEHLKELKNRGNQ 171


>gi|331696043|ref|YP_004332282.1| ATP-dependent chaperone ClpB [Pseudonocardia dioxanivorans CB1190]
 gi|326950732|gb|AEA24429.1| ATP-dependent chaperone ClpB [Pseudonocardia dioxanivorans CB1190]
          Length = 874

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 71/214 (33%), Gaps = 16/214 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           +++++ + +   R ++           +  +++    + ++     + + +L+    ++H
Sbjct: 324 YRQHVEKDAALERRFQPVFVDEPTVEDTVSILRGLRERFEVFHGVRILDGSLIAAATLSH 383

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             +      +   I   +    +L + + S   E      + +   + E    +     +
Sbjct: 384 RYLTDRFLPD-KAIDLVDEACARLRTEIDSMPAELDEITRKVMRLEIEEAALAQE----E 438

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ-------IAQVTA 607
                A L     E    D+R       A +   R   ++ +E+  Q       I     
Sbjct: 439 DAASRARLDQLRRELA--DLRGEADAMRAQWNAERQAIKRVQELRAQLEQVRHDIQDAER 496

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEG 640
             +  + A L  +   ++  ++   E + A  +G
Sbjct: 497 AYDLNRAAELRFTRQADLERKLEAEERRLAEKQG 530


>gi|294786319|ref|ZP_06751573.1| replicative DNA helicase [Parascardovia denticolens F0305]
 gi|315225861|ref|ZP_07867649.1| replicative DNA helicase DnaB [Parascardovia denticolens DSM 10105]
 gi|294485152|gb|EFG32786.1| replicative DNA helicase [Parascardovia denticolens F0305]
 gi|315119993|gb|EFT83125.1| replicative DNA helicase DnaB [Parascardovia denticolens DSM 10105]
          Length = 472

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/185 (9%), Positives = 52/185 (28%), Gaps = 12/185 (6%)

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
                 +   A      G   +  +S   +          E A+L  ++     + E  +
Sbjct: 3   QNQTYPYASGASSAPAGGGQTQTGRSLYDRVPPHDSE--AEKAVLGGMLMSKEAVGEVSE 60

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
            +    +   + Q ++  +   +   +          L   G    ++++        L 
Sbjct: 61  MIKSDDFYEPQNQMVYDTILDLYSASQPTDVIMTVNELTRNGG---IEKVGGSEYVHSLV 117

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
            +   A             A   R + + R   E   +I Q+    +  +   ++++   
Sbjct: 118 ESVPTAAN-------ASFYANIVREQAILRNVIETGTKITQLGYSADGSEAEDIVNLAQA 170

Query: 624 VHIQI 628
              ++
Sbjct: 171 QAFEL 175


>gi|294670699|ref|ZP_06735574.1| hypothetical protein NEIELOOT_02421 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307587|gb|EFE48830.1| hypothetical protein NEIELOOT_02421 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 470

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 55/173 (31%), Gaps = 12/173 (6%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           + +    L       E ++L  L+   +        +    +  +E + ++  + +   E
Sbjct: 14  NEVAALSLPPHSVEAEQSVLGGLLLENSAWDRIADVVTGEDFYRHEHRVIFRTIAALINE 73

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            +      + + L           L+       L +           + Y + +    R 
Sbjct: 74  SRPADIITVQEWLERN------DDLEAVGGFNYLITLAQNTPSAANIRRYAEIV----RE 123

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           + + RQ  E+  +IA+     + +  A L+        QI   ES     +GF
Sbjct: 124 KSVMRQLAEVGTEIARNAYNPQGKDAAQLLDEAENKVFQIA--ESTAKSKQGF 174


>gi|255658788|ref|ZP_05404197.1| replicative DNA helicase [Mitsuokella multacida DSM 20544]
 gi|260849186|gb|EEX69193.1| replicative DNA helicase [Mitsuokella multacida DSM 20544]
          Length = 442

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 13/148 (8%), Positives = 48/148 (32%), Gaps = 11/148 (7%)

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
            +  ++  +    E A+L  ++     + E  + L    +     ++++  +       +
Sbjct: 2   ALPERVPPQNIEAEQAVLGAMMIKKEAIVEAQEILQPEDFYREAHRRVYDAMLKLAENDE 61

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 + ++L + G      +L++ V      +             Y   +    + + 
Sbjct: 62  AVDLVTLTEQLRKDG------ELEK-VGGIPFITTIANIVPTAANVAYHAKI---VKEKA 111

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILI 618
             R+  +   +IA    + + +    ++
Sbjct: 112 ELRRLIDAATEIASAAYE-DTQPVENIM 138


>gi|194219197|ref|XP_001916791.1| PREDICTED: myosin, heavy chain 11, smooth muscle [Equus caballus]
          Length = 1979

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 101/281 (35%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 884  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 943

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 944  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1003

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1004 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1063

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L        E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1064 KRKLDGEASDLHEQIADLQAQIAELKMQLAKKEEELQAALSRLDDEIA---QKNNALKKI 1120

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1121 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1161


>gi|171914180|ref|ZP_02929650.1| Chromosome segregation protein SMC [Verrucomicrobium spinosum DSM
           4136]
          Length = 1328

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 58/412 (14%), Positives = 131/412 (31%), Gaps = 23/412 (5%)

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
             +F  G++ Y   G +  L+                 V     +  L  A  ++  S  
Sbjct: 102 RRVFRDGRSEYRINGTICRLKDFQELLAGTGIGRSAYSVMEQGKIDMLISAKPEDRRSVF 161

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
             A    + +   K + R +   + +   +      +   +  L    +         +D
Sbjct: 162 EEAAGITKFKGQKKEALRKLEYTEANLLRVADIIAEVKRQMGTLHRQAQKAKRYQVVHKD 221

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS-FNTPDERAELEIHLKNCINHIKD 417
                   G   F +   E     + +    TE          + +     +   + ++ 
Sbjct: 222 LRILDLHLGHKHFTEYTAEKTESENQIISLMTELNDLHQRVHAKEQEVTETREIYHQVES 281

Query: 418 QK--LRYYYSQAIRDRLQ------QLFQKYITEHSGYGRYWKKNARHRDQ--KGPSQRLM 467
               LR   SQ  R ++Q      +  ++ + E  G  R  +++A +         + L 
Sbjct: 282 TINGLRQQ-SQEFRSKIQGAESKIEFNRERVEELEGRIRRNEEDATNNRDMVDRQQRELA 340

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
            +      +      R+ AL    I H AI+ E+ Q+L   R      + L        +
Sbjct: 341 AADEQFSSIRNAIESRQYALEEHQITHNAIIPER-QKLEMER------RTLRETF--RRL 391

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E +    +   Q L  +      ++ +    D        EA+ V+     +Q   L   
Sbjct: 392 EGEAATADAKAQSLTNQ-MATDRQRHEALAHDKQSAVQAREASQVEFDHLQRQIEELETV 450

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              L  + +E+   I +   + +A  +  L ++  ++  +  ++E  + ++E
Sbjct: 451 RAELEHKLKELTNTIQEQRRQRDAA-SEELNNLQRQLTQRRSRLEVLQQILE 501


>gi|170781213|ref|YP_001709545.1| putative low complexity hydrophilic protein [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155781|emb|CAQ00902.1| putative low complexity hydrophilic protein [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 591

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 32/301 (10%), Positives = 79/301 (26%), Gaps = 29/301 (9%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                A       +   +    + +          E  +L     +    ++    R   
Sbjct: 104 QEETDAQRAEAEATARHLVDSARAQAAQILDAARREADDLHERADDRAEGLRSDAEREAA 163

Query: 425 SQAIRDR-----LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           +  +R R     L+   ++                R R  +   +    ++ +  +    
Sbjct: 164 ALLLRTRTEVADLRSTAERETDAQRAEAAREVAELRARVDRETDEARRDAADLARETVLA 223

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL----WSFLFSDFVEQKYFLPE 535
               E  L      H   + E+  +L     +  E  +L         +   EQ     +
Sbjct: 224 RGALERELADARARHDETVAEERADLDRDARETEERLRLDEETRRIALAQLEEQTRADLD 283

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS--- 592
              ++       EL    D   R         + ++ + R   ++ +A  +    L    
Sbjct: 284 REIEQARTDWDRELQASRDDFDRRIHAERTAFDRDVEETRAALEREIAETREALELEVAS 343

Query: 593 -----------------RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                            R   +  +++ + T     +     ++    +  +I Q E+ E
Sbjct: 344 ARADLARDVDEARTDLARDIAQGTERLERETRATREQLELEAVTARAALEREIAQAEALE 403

Query: 636 A 636
           A
Sbjct: 404 A 404


>gi|157414843|ref|YP_001482099.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni 81116]
 gi|157385807|gb|ABV52122.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747481|gb|ADN90751.1| Replicative DNA helicase [Campylobacter jejuni subsp. jejuni M1]
          Length = 458

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 48/153 (31%), Gaps = 10/153 (6%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L + I           +++   +     Q ++  + +    ++      + +   
Sbjct: 10  LERAILSSCIMSEEAYASIAGDISPKDFSLKAHQDIFKAVIACSNNKEPISVSFLRKH-- 67

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           ++   ++L ++        L +   E     V++       L        R   EI  +I
Sbjct: 68  KKIDEQILAEILATPSMIDLPAYVNELREKSVKRQLLSFAHLLPTRINEDRAVSEIADEI 127

Query: 603 --------AQVTAKGEAEKTAILISILHEVHIQ 627
                    +V ++   +   ++  +  E   Q
Sbjct: 128 GKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ 160


>gi|152982158|ref|YP_001354469.1| hypothetical protein mma_2779 [Janthinobacterium sp. Marseille]
 gi|151282235|gb|ABR90645.1| Uncharacterized conserved protein (possible phage related tail
           length tape measure protein) [Janthinobacterium sp.
           Marseille]
          Length = 901

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 82/281 (29%), Gaps = 31/281 (11%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DP+   R     A       +                      +  L          ++D
Sbjct: 345 DPELLQRLTKPKAV----KPAQDTTGAQTTLMKAQLDAEFALLKDGLTRQQTALDAALED 400

Query: 418 QKL--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           + +  R YY+Q      +++  +   +     R  +                +S   + +
Sbjct: 401 RLVSVRDYYTQKTAIEQREVDAEIARKQQELARSQQVAT-----------TGKSENDRLR 449

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              + +  EA L+        I Q   ++ A         ++L   L     E       
Sbjct: 450 AKAEVAKSEADLITLNNRRTDIEQANARKAAQAE------RELADALAQAREE-----LA 498

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +I     +      +++  R +R     +A ++ + V +        A       L  Q 
Sbjct: 499 QITGTATDADRQAAIERSYRDLR--ARLAAESDTDGVSLVDRLIDVKAAQANLAALEAQW 556

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            ++ +++       + ++ A L++       QI  ++ Q A
Sbjct: 557 RQVTERLRNAQEAIQTQQQAGLLTEAQA-RQQIVALQQQSA 596


>gi|41688313|dbj|BAD08664.1| FYVE and coiled-coil domain containing 1 [Sus scrofa]
          Length = 771

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 4/110 (3%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +   Q+    E++ + L  +   E    L+ QV +  L          +  Q   Q  
Sbjct: 563 IEELNRQQSAQLEQLAKELQLK--EEARASLEHQVEEMALLREEPSGKGQEAAQLRHQLQ 620

Query: 583 ALYKRFRLLSRQKEEIEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQ 630
                   L  +  E++++    +   +   ++   L+  L  +  Q+ Q
Sbjct: 621 ESLAHLSSLKEELAEVKREEGQRREEKELLEQEARSLMRQLQLLETQLAQ 670


>gi|86153243|ref|ZP_01071447.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85842969|gb|EAQ60180.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 458

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 48/153 (31%), Gaps = 10/153 (6%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L + I           +++   +     Q ++  + +    ++      + +   
Sbjct: 10  LERAILSSCIMSEEAYASIAGDISPKDFSLKAHQDIFKAVIACSNNKEPISVSFLRKH-- 67

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           ++   ++L ++        L +   E     V++       L        R   EI  +I
Sbjct: 68  KKIDEQILAEILATPSMIDLPAYVNELREKSVKRQLLSFAHLLPTRINEDRAVSEIADEI 127

Query: 603 --------AQVTAKGEAEKTAILISILHEVHIQ 627
                    +V ++   +   ++  +  E   Q
Sbjct: 128 GKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ 160


>gi|324499917|gb|ADY39976.1| Myosin-3 [Ascaris suum]
          Length = 1961

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 42/371 (11%), Positives = 112/371 (30%), Gaps = 27/371 (7%)

Query: 287  CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
             +  VQ     L           L       +              + ++ +   +    
Sbjct: 809  YKRRVQQQSGLLTLQRNVRAWCTLRTWEWFKLYGRVKPMLKAGKITEEMEKLTDQIKQLE 868

Query: 347  RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
            +         +D +  ++                  +     E+E R       + ELE 
Sbjct: 869  QTLQKEEGNRKDLEKQVKVLMDEKAALFENLEK---EKANLAESEERYAKLNAAKVELER 925

Query: 407  HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             L      I D + R         + +    +   ++S      +K+   +  +  + R 
Sbjct: 926  QLNELSERIADMEDRQNEMGRQHKKDEAEINELKKKNSELEMSLRKSETEKQAREQNIRA 985

Query: 467  MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
            +Q  +     +     +E        +   + ++  ++L       N + KL S L    
Sbjct: 986  LQDEMSNQDENIARVNKEKK------HQEEVNRKLMEDLQAEEDKVNYMNKLKSKLEQQL 1039

Query: 527  VE-QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
             + ++    ++  ++  E+   ++  +L   + +             ++++     +A  
Sbjct: 1040 DDMEETVERDKRARQDLEKAKRKVEGELKVAMENVDEIMKQKHDIEQNLKKKEADLMAAS 1099

Query: 586  KRFRL-------LSRQKEEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQI- 628
             +          L +Q +++E +I+++    E E+          + L   L E+  ++ 
Sbjct: 1100 SKLEEEQSLVSKLQKQIKDLETRISELEEDLEQERQSRSKSDRTRSELQRELEELSERLD 1159

Query: 629  HQIESQEAMIE 639
             Q  +  A IE
Sbjct: 1160 EQGGATAAQIE 1170


>gi|295425403|ref|ZP_06818101.1| replicative DNA helicase DnaB [Lactobacillus amylolyticus DSM
           11664]
 gi|295064905|gb|EFG55815.1| replicative DNA helicase DnaB [Lactobacillus amylolyticus DSM
           11664]
          Length = 463

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 44/156 (28%), Gaps = 11/156 (7%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +     S  E A+L  +   P  + +    +    +     + ++  +           
Sbjct: 6   SQQIPHDSEAEKAVLGAIFIDPEAIADASAVVQPEDFYERVNRLIFQAMLDLSDRGDAID 65

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  +   L ++       QLD     A +          +    Y Q +    R  LL R
Sbjct: 66  PLTLQDELTKK------NQLDDIGGIAYISQLALSTPTAEHITYYAQIV---HRKSLLRR 116

Query: 594 QKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQ 627
                +K I+      +   +      S +  V  +
Sbjct: 117 LISASQKIISNAMDGSDDVTDILDNAESEIMNVSSE 152


>gi|198275954|ref|ZP_03208485.1| hypothetical protein BACPLE_02137 [Bacteroides plebeius DSM 17135]
 gi|198271583|gb|EDY95853.1| hypothetical protein BACPLE_02137 [Bacteroides plebeius DSM 17135]
          Length = 862

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 75/272 (27%), Gaps = 41/272 (15%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + L  +DM              +    +   +     +I        
Sbjct: 220 RILRGDVPENLKNKQLFSLDMGALVAGAKYKGEFEERLKSVINEVTKSDGNI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      +++ P                      +   L   +             R+ +
Sbjct: 328 ERRFQTVMVDEPDTASSI---------------SILRGLKERYENHHQV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + D        +  I  + +    A  L      L  + +EIE+++ 
Sbjct: 366 EAIIAAVELSNRYISDR----FLPDKAIDLMDEA---AAKLRMERDSLPEELDEIERRLK 418

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           Q+  + EA K     + L +++ +I +++ QE
Sbjct: 419 QLEIEREAIKREKDEAKLAQLNKEIAELKEQE 450


>gi|170029190|ref|XP_001842476.1| myosin heavy chain [Culex quinquefasciatus]
 gi|167881579|gb|EDS44962.1| myosin heavy chain [Culex quinquefasciatus]
          Length = 2068

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 29/260 (11%), Positives = 83/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1681 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1740

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 1741 NKANAEAQKNIKRYQQQMKDVQSALEEEQRARDDAREQLGISER-------RANALQNEL 1793

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE----EIHQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1794 EESRTLLEQADRGRRQAEQELGDAHEQLNDVSAQNASIAAAKRKLESELQTLHSDLDELL 1853

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +T  L
Sbjct: 1854 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQSQEKMRKALEQQIKELQVRLDDAETNAL 1913

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1914 KGGKKAIQKLEQRVRELEAE 1933


>gi|326480444|gb|EGE04454.1| hypothetical protein TEQG_08669 [Trichophyton equinum CBS 127.97]
          Length = 1043

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 65/219 (29%), Gaps = 4/219 (1%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +   L   Y       +         E SG     K++   R   G +      S     
Sbjct: 109 RGPPLIQAYVPKAAAIVSPSAPVMSREQSGGAAQAKRSGGARRSIGSTSVQDSGSPQMLD 168

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLP 534
             +         L  L     +LQ++ + L   +  +  E ++L   L     + K  + 
Sbjct: 169 DGEAAGGEYEGSLKQLAERLKVLQQENESLDKQLSQEEKEYEQLLRELEDQRNDLKQRVK 228

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+           + + +L+   R      +  E  +       ++      R+     +
Sbjct: 229 EKDDA---TSDLRKHINKLESINRTVQNEKSKREKLLQQKETEQKKRREDIVRWDEREIE 285

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            ++    + +   + + E T  L     ++  +  +++ 
Sbjct: 286 IKDELANLQKEKTRIDEESTTKLEEYRRKITEEQGEMKQ 324


>gi|326472849|gb|EGD96858.1| hypothetical protein TESG_04285 [Trichophyton tonsurans CBS 112818]
          Length = 1097

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 65/219 (29%), Gaps = 4/219 (1%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +   L   Y       +         E SG     K++   R   G +      S     
Sbjct: 163 RGPPLIQAYVPKAAAIVSPSAPVMSREQSGGAAQAKRSGGARRSIGSTSVQDSGSPQMLD 222

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLP 534
             +         L  L     +LQ++ + L   +  +  E ++L   L     + K  + 
Sbjct: 223 DGEAAGGEYEGSLKQLAERLKVLQQENESLDKQLSQEEKEYEQLLRELEDQRNDLKQRVK 282

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+           + + +L+   R      +  E  +       ++      R+     +
Sbjct: 283 EKDDA---TSDLRKHINKLESINRTVQNEKSKREKLLQQKETEQKKRREDIVRWDEREIE 339

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            ++    + +   + + E T  L     ++  +  +++ 
Sbjct: 340 IKDELANLQKEKTRIDEESTTKLEEYRRKITEEQGEMKQ 378


>gi|296208094|ref|XP_002750930.1| PREDICTED: protein Hook homolog 1 isoform 1 [Callithrix jacchus]
          Length = 729

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 105/304 (34%), Gaps = 25/304 (8%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D             + ++  + 
Sbjct: 270 DDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQ 329

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      +R +++ L +  +          ++  +    +   +   +            
Sbjct: 330 KLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSE 389

Query: 481 SLREAALLLTLIN----HPAILQEQYQELAD---IRYDNNELQ--KLWSFLFSDFVEQKY 531
           S R   L   +      H A+L+E+ + +     ++  N EL+  ++     +       
Sbjct: 390 SKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTGASAT 449

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALA------- 583
              E +   +    + E+  +L  + +   L    +E   I ++++  +Q          
Sbjct: 450 KSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELET 509

Query: 584 ----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ----IESQE 635
                 +R R L +Q E+++K + +  +K E E ++ L   L     ++ +    ++ ++
Sbjct: 510 EQRLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEDLQKKQ 569

Query: 636 AMIE 639
           A+IE
Sbjct: 570 ALIE 573


>gi|223975969|gb|ACN32172.1| unknown [Zea mays]
          Length = 912

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + I   +              + + +      
Sbjct: 393 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALE------KEKDKASKARLIE 446

Query: 567 TEANIVDVRQGYQQALALYKRFRL-------LSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
               + D+R   Q     Y++ +        L +++EE++  + +   + +  + A L  
Sbjct: 447 VRKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAERRMDLARVADLKY 506

Query: 619 SILHEVHIQIHQIESQ 634
             L E+   I ++ES+
Sbjct: 507 GALQEIDAAISKLESE 522


>gi|255541800|ref|XP_002511964.1| Protein CASP, putative [Ricinus communis]
 gi|223549144|gb|EEF50633.1| Protein CASP, putative [Ricinus communis]
          Length = 682

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 69/192 (35%), Gaps = 21/192 (10%)

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI-- 508
           ++  R  + +  S +  +      +  KK S  E   L       ++L+   +E+ ++  
Sbjct: 41  EQGLRIAENQENSLKNRRKLAESTRDFKKASPEEKLSL-----FNSLLKGYQEEVDNLTK 95

Query: 509 --RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
             ++  N    ++  L+          P      + ++     L +L+ + R   +    
Sbjct: 96  RAKFGENAFLNIYQKLYEA------PDPYPALASIADQDLK--LSELESENRKMKVELEE 147

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE--- 623
                  ++        L  R R L +Q EE  K+I ++  +  AE+    + +L E   
Sbjct: 148 FRTEATHLKNQQATIRRLEDRNRQLEQQMEEKVKEIVEMKQRSLAEENQKTLEVLKEREQ 207

Query: 624 -VHIQIHQIESQ 634
            +  Q+ Q +  
Sbjct: 208 SLQDQLRQAKES 219


>gi|58037313|ref|NP_082757.1| coiled-coil domain-containing protein 18 [Mus musculus]
 gi|81890401|sp|Q640L5|CCD18_MOUSE RecName: Full=Coiled-coil domain-containing protein 18
 gi|52221217|gb|AAH82598.1| Coiled-coil domain containing 18 [Mus musculus]
          Length = 1455

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 25/253 (9%), Positives = 85/253 (33%), Gaps = 4/253 (1%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            R+ +       +E +++E  + +     +++ ++      + D+ +   +K         
Sbjct: 868  RQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELE 927

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            R          +    +  +++ L       K +LR+   L  ++    +  E  ++   
Sbjct: 928  RLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTT 985

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            I+    EL++    +     E          +    +     +  LD  +R+        
Sbjct: 986  IKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1045

Query: 568  EANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
               +   + +   +     K+   L+ + +  ++Q+ +        +   +  +  E+  
Sbjct: 1046 IIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNE-QEISQLKKEIER 1104

Query: 627  QIHQIESQEAMIE 639
               +++  E++I+
Sbjct: 1105 TQQRMKEMESVIK 1117


>gi|58336366|ref|YP_192951.1| replicative DNA helicase [Lactobacillus acidophilus NCFM]
 gi|227902583|ref|ZP_04020388.1| replicative DNA helicase [Lactobacillus acidophilus ATCC 4796]
 gi|58253683|gb|AAV41920.1| replicative DNA helicase [Lactobacillus acidophilus NCFM]
 gi|227869672|gb|EEJ77093.1| replicative DNA helicase [Lactobacillus acidophilus ATCC 4796]
          Length = 464

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 45/148 (30%), Gaps = 7/148 (4%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +     S  E A+L  +   P  + +    +    +     Q ++  +      ++   
Sbjct: 6   SQQIPHDSSAEKAVLGAIFIDPEAIADASAVVQPEDFYEKANQIVFQAMIDLSDREEAID 65

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  +   L +      L  +      + L  AT  A  V          AL ++    S+
Sbjct: 66  PLTLQDELNK---RNQLDDIGGIGYVSELALATPTAAHVTYYAQIVHRKALLRKLIFASQ 122

Query: 594 QKEEIEKQIAQVTAKGE--AEKTAILIS 619
           +   I   + +         +  + +++
Sbjct: 123 KI--ITNAMNESDDVTNILDDAESEIMN 148


>gi|3005087|gb|AAC09299.1| hook2 protein [Homo sapiens]
          Length = 719

 Score = 44.5 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 85/262 (32%), Gaps = 23/262 (8%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  DE  +           +   + R    + +R +++QL ++         +   +  R
Sbjct: 295 DEMDELRQSSERAGQLEATLTSCRRRLGELRELRRQVRQLEERNAGHAERTRQLEDELRR 354

Query: 456 HRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLTL---INHPAILQEQYQELADIRYD 511
               +     +  Q   ++G+L ++    E  L         + ++ +E+ + LA+    
Sbjct: 355 AGSLRAQLEAQRRQVQELQGQLQEEAMKAEKWLFECRNLEEKYESVTKEKERLLAERDSL 414

Query: 512 NNELQKLWSFLFS---DFVEQKYFLP-----EEIHQRLCERGFGELLKQLDRQVRDAGLW 563
               ++L                  P     + +   +      E L +L  + +     
Sbjct: 415 REANEELRCAQLQPRGLTQADPSLDPTSTPVDNLAAEILPAELRETLLRLQLENKRLCRQ 474

Query: 564 SATTEANIVDVRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKGEAE 612
            A       ++++  + A                +   L  Q E+++K + +   K E  
Sbjct: 475 EAADRERQEELQRHLEDANRARHGLETQHRLNQQQLSELRAQVEDLQKALQEQGGKTEDA 534

Query: 613 KTAILISILHEVHIQIHQIESQ 634
            + +L   L E   ++H+ + +
Sbjct: 535 ISILLKRKLEEHLQKLHEADLE 556



 Score = 43.0 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 85/277 (30%), Gaps = 7/277 (2%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +  ++     A ++L+ +  P           +         +E             D  
Sbjct: 139 EESVQHVVMEAIQELMTKDTPDSLSPETYGNFDSQSRRYYFLSEEAEEGDELQQRCLD-L 197

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R      + +  Q L Q+        GR   +       K       Q   ++ +  + 
Sbjct: 198 ERQLML--LSEEKQSLAQENAGLRERMGRPEGEGTPGLTAKKLLLLQSQLEQLQEENFRL 255

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            S RE   L        + + Q++  A       E Q L   +       +     E   
Sbjct: 256 ESGREDERLRCAELEREVAELQHRNQALTSLA-QEAQALKDEMDELRQSSERAGQLEATL 314

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             C R  GE L++L RQVR     +A        +    ++A +L  +     RQ +E++
Sbjct: 315 TSCRRRLGE-LRELRRQVRQLEERNAGHAERTRQLEDELRRAGSLRAQLEAQRRQVQELQ 373

Query: 600 KQIAQVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
            Q+ +   K E        L      V  +  ++ ++
Sbjct: 374 GQLQEEAMKAEKWLFECRNLEEKYESVTKEKERLLAE 410


>gi|332224166|ref|XP_003261234.1| PREDICTED: dystrophin [Nomascus leucogenys]
          Length = 3685

 Score = 44.5 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 2529 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 2584

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 2585 WLEAKEEAEQVLGQARAKLESWKEGPYTIDAIQKKITETKQLAKDLRQWQINVDVANDLA 2644

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2645 LKLLRDYSADDTRKVHMITENINASWGSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 2703

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 2704 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 2763

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2764 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 2823

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2824 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 2882

Query: 550  -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 2883 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 2942

Query: 609  GEA 611
             + 
Sbjct: 2943 ADE 2945



 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L +  +K   +     +  K        K  S R   ++L+  +      L E  +   
Sbjct: 1701 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 1760

Query: 491  -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                  I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 1761 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 1820

Query: 546  ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                 ELL++ D   +         E  I                        +   Q  
Sbjct: 1821 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 1880

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1881 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 1932


>gi|322786872|gb|EFZ13136.1| hypothetical protein SINV_00390 [Solenopsis invicta]
          Length = 2417

 Score = 44.5 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 81/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 2031 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 2090

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    + +  +   + E           A+  E 
Sbjct: 2091 NKANAEAQKNIKRYQQQLKDVQTALEEEQRARDEARELLGISER-------RANALQNEL 2143

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 2144 EESRTLLEQADRGRRQAEQELADCHEQLNELSAQNASISGAKRKLEAELQTLHSDLDELL 2203

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E QI ++  + +  +   L
Sbjct: 2204 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQVRLDEAEANAL 2263

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 2264 KGGKKAIQKLEQRVRELENE 2283



 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 67/225 (29%), Gaps = 12/225 (5%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + + D ++ L  +            K   R   +K   Q  ++ +    +  +   LR  
Sbjct: 1961 KNLADEVKDLLDQIGEGGRNIHEIEKARKRLEAEKDELQAALEEAEAALEQEENKVLRSQ 2020

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
              L  +     I +   ++  +        Q+    + +    +     E +  +     
Sbjct: 2021 LELSQV--RQEIDRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEA 2078

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK--------EE 597
                L+        A   +           +  Q AL   +R R  +R+           
Sbjct: 2079 DINELEIALDHANKANAEAQKNIKRYQQQLKDVQTALEEEQRARDEARELLGISERRANA 2138

Query: 598  IEKQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQEAMIEG 640
            ++ ++ +     E            L + H Q++++ +Q A I G
Sbjct: 2139 LQNELEESRTLLEQADRGRRQAEQELADCHEQLNELSAQNASISG 2183



 Score = 37.9 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 69/232 (29%), Gaps = 25/232 (10%)

Query: 428  IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP--SQRLMQSSLVKGKLSKKPSLREA 485
            I +R     Q  + E         +  R  +Q+     ++L + S     +S      EA
Sbjct: 2131 ISERRANALQNELEESRTLLEQADRGRRQAEQELADCHEQLNELSAQNASISGAKRKLEA 2190

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L     +   +L E        +    +  +L   L     +      E++ + L  + 
Sbjct: 2191 ELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADEL--RAEQDHAQTQEKLRKALETQ- 2247

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL--------SRQKEE 597
              EL  +LD    +A          +    +  +  L   +R             R+ +E
Sbjct: 2248 IKELQVRLDEAEANALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKSERRIKE 2307

Query: 598  IEKQIAQVTAKG------------EAEKTAILISILHEVHIQIHQIESQEAM 637
            +  Q+  + + G              +    L   +     QI + E   A+
Sbjct: 2308 LSFQVENLDSTGIYADEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL 2359


>gi|118100079|ref|XP_425393.2| PREDICTED: similar to CUTL1 protein [Gallus gallus]
          Length = 1673

 Score = 44.5 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 97/278 (34%), Gaps = 21/278 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 235 DPVPALDLGQQLQLKVQRMHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 294

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493
            Q    +        ++  ++   +   +          KL +     +A  L T +   
Sbjct: 295 EQTLKNQAENIALEKEQKLQNDFAEKERKLQETQMSTASKLEEAEHKVQA--LQTALEKT 352

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +   + +   +     +E++ + + L   +   E      E + ++L        L 
Sbjct: 353 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANKSLQLA 412

Query: 552 -------QLDRQV-----RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598
                   +++ +         +  A  E  I  + +  Q+      + R  S  Q  ++
Sbjct: 413 TQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQGSLTKLRENSSSQISQL 472

Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE 635
           E+Q+    +  +  E+     +   EV  +++ ++S E
Sbjct: 473 EQQLTAKNSTLKQLEEKLKGQADYEEVKKELNILKSME 510


>gi|219847263|ref|YP_002461696.1| ATP-dependent chaperone ClpB [Chloroflexus aggregans DSM 9485]
 gi|219541522|gb|ACL23260.1| ATP-dependent chaperone ClpB [Chloroflexus aggregans DSM 9485]
          Length = 861

 Score = 44.5 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 68/203 (33%), Gaps = 8/203 (3%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++K+I + +   R ++           +  +++    + +      + + A++   +   
Sbjct: 321 YRKHIEKDAALERRFQPVMVDPPSVEDTISILRGLKERYETHHGVRITDGAIIAAAMLSD 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + SD  E        +   +         K+ D+
Sbjct: 381 RYISDRFLPDKAIDLIDEAAARLRMEITSDPQELDDLKRRIMQLEIEREALR---KEKDQ 437

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEA 611
             ++         AN+ + R   +  +   ++     +Q +E        I Q   + + 
Sbjct: 438 ASKERLEKLEQELANLREQRSALEAQIQRERQELERIQQLKEKIEQTRAAIEQAQRQYDY 497

Query: 612 EKTAIL-ISILHEVHIQIHQIES 633
            K A L    L  +  ++   E+
Sbjct: 498 NKAAELQYGTLVSLERELQAAEA 520



 Score = 41.4 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 10/146 (6%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           I   A L+ ++Q +        +   +   L   +             R+ +        
Sbjct: 325 IEKDAALERRFQPVMVDPPSVEDTISILRGLKERYETHHGV-------RITDGAIIAAAM 377

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE---KQIAQVTAK 608
             DR + D  L     +       +   +  +  +    L R+  ++E   + + +   +
Sbjct: 378 LSDRYISDRFLPDKAIDLIDEAAARLRMEITSDPQELDDLKRRIMQLEIEREALRKEKDQ 437

Query: 609 GEAEKTAILISILHEVHIQIHQIESQ 634
              E+   L   L  +  Q   +E+Q
Sbjct: 438 ASKERLEKLEQELANLREQRSALEAQ 463


>gi|326430854|gb|EGD76424.1| hypothetical protein PTSG_07542 [Salpingoeca sp. ATCC 50818]
          Length = 1557

 Score = 44.5 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 91/284 (32%), Gaps = 26/284 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           +   ++          S      +A  +  ++  +  I+ + ++      +  +L+   Q
Sbjct: 191 AQSGLEARLAELDSRYSAAHSRHQAGAQSSVEERLQAIEREAMKRA-EAHVASKLEHFKQ 249

Query: 438 KYITEHSGYGR----YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
             +       R              + G  +RL Q +  +  L      R   +  TL  
Sbjct: 250 SELARVKAQARIELKAQYDEKVAEMEAGYEERLSQLAKREHDLDGAYHRRLQEIERTLYE 309

Query: 494 HPAILQEQYQELA--DIRYDNNELQKLWSFLF----SDFVEQKYFLPEEIHQRLCERGFG 547
               +Q + ++LA  +            +       +   E      E+    + E+   
Sbjct: 310 ERQHIQARARDLAAREAELQREAHHTARAARLHEDAATHTEDAIRAKEKTMAEMEEQYQR 369

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           +L  ++     +     A  E+ +       ++  A   R +LL++  +E ++ +     
Sbjct: 370 KLQTEIAAMKDELRAQLADRESELRQREHVLEEQQATVSRQQLLTQHLQEEKRDL----- 424

Query: 608 KGEAEKTAILISILHEVHIQ-------IHQIESQEAMIEGFGKM 644
               ++   L + + E+  +       + ++ +    I+GF  +
Sbjct: 425 ---TDEARRLKAEVTELQQKNTRMQINLAELNAVAYKIDGFDAL 465


>gi|312092048|ref|XP_003147199.1| myosin tail family protein [Loa loa]
 gi|307757636|gb|EFO16870.1| myosin tail family protein [Loa loa]
          Length = 863

 Score = 44.5 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 90/275 (32%), Gaps = 24/275 (8%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
           + +   E E R       +A++E HL+   + + + + R       + + +Q       +
Sbjct: 470 EKVHSAEAEERVQKLNAMKADMERHLQELNDRVAEMEDRNENLNRAKKKTEQEVSDLKRK 529

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
           +       +K    +  +  S R +Q  +     +     +E            + ++  
Sbjct: 530 NQELEMALRKAESEKQSREQSIRSLQGEMASQDEAVARVSKEKK------QQEEVNRKLM 583

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--------ERGFGELLKQLD 554
           ++L       N +QKL + +     + +  L  E   RL         E       + +D
Sbjct: 584 EDLQAEEDKVNHMQKLKTKIEQQLDDMEEKLEREKRMRLDLEKAKRKVEGELKVAQENMD 643

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
              +         +    D+     +          L +Q + +E +IA++    E E+ 
Sbjct: 644 EITKQKHDIEQILKRKDADLVTTVGKLDGEQSTVNKLQKQIKCLEGRIAELEEDLEQERQ 703

Query: 615 AI---------LISILHEVHIQI-HQIESQEAMIE 639
           +          L   L E+  ++  Q  +  A IE
Sbjct: 704 SRGKLDRAKGDLQRELDEITQRLDEQGGATAAQIE 738


>gi|301608474|ref|XP_002933814.1| PREDICTED: nucleoprotein TPR-like [Xenopus (Silurana) tropicalis]
          Length = 2339

 Score = 44.5 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 91/261 (34%), Gaps = 17/261 (6%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R    +     ++  EL          ++    RY   Q   +  ++       +     
Sbjct: 703 RMLNEQHDKLQEQVTELRSQNTKISTQLEFASKRYEMLQDNVEGYRREITTLQEKTQKLS 762

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
              +K  +  +      R     L   ++  +   RE  LL   ++   + QE+   +A+
Sbjct: 763 ATTQKQEQIINTLTQDLRAANEKLAVAEVRAENLKREKELLK--MSEVRLTQERESLIAE 820

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSA 565
            R  N  L  L   +       +  + +  + ++   E+   +  K+L+ ++    L   
Sbjct: 821 QRGQNLLLTNL-QTIQVTLERSETEIKQRYNNQIERLEQELAQTKKKLEHEIEQRHLLGK 879

Query: 566 TTEANIVDVRQGYQQALALYKRFRLL----SRQKEEIEKQIAQVTAKGEAEKTAI----- 616
             +  ++++++ Y+  L L+   + L     ++   +++Q+     +  +  +       
Sbjct: 880 NQDVQVLELKKQYETELNLHNNTKELLKNSHKEISVLKQQLNSFELQLASRSSQQAASND 939

Query: 617 ---LISILHEVHIQIHQIESQ 634
               I  + E+  ++ Q E Q
Sbjct: 940 KDVNIEDVEEIKTKLRQSEEQ 960


>gi|301776921|ref|XP_002923880.1| PREDICTED: Golgin subfamily A member 5-like [Ailuropoda
           melanoleuca]
 gi|281346372|gb|EFB21956.1| hypothetical protein PANDA_013108 [Ailuropoda melanoleuca]
          Length = 730

 Score = 44.5 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 94/255 (36%), Gaps = 12/255 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSG 445
            E +       +   +++      +N +  +  R   ++A  + +R     +K   E   
Sbjct: 354 HEADAARKREQESCKQMQSEFAARLNKM--EVERQSLAEAVTLAERKYSEEKKRADELQQ 411

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             + +K +     Q+    +   + +++ K     SL+E +    L +  A   E  +  
Sbjct: 412 QVKVYKSSLESSKQEFIDYKQKATRILQSKEKLINSLKEGSGFEGLDSSTATSMELEELR 471

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +      E+QKL   +     E +    +++ +        E L+ L  Q+        
Sbjct: 472 HEKEMQKEEIQKLLGQIHQLRSELQDVEAQQVSEA---ESAREQLQDLQDQIAGQKASKQ 528

Query: 566 TTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             EA +   +Q +      LY+    L  + ++ E++I ++  +   +  +       E+
Sbjct: 529 ELEAELERQKQEFHYIEEDLYRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNSSQ--SEL 586

Query: 625 HIQIHQIESQEAMIE 639
             ++HQ+   E +I+
Sbjct: 587 ENRLHQL--TETLIQ 599


>gi|297600374|ref|NP_001049041.2| Os03g0161100 [Oryza sativa Japonica Group]
 gi|255674228|dbj|BAF10955.2| Os03g0161100 [Oryza sativa Japonica Group]
          Length = 2753

 Score = 44.5 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 45/422 (10%), Positives = 124/422 (29%), Gaps = 18/422 (4%)

Query: 231  VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
                N              N    +  L+K +    R+       L +   +  ++    
Sbjct: 723  HALENLHSQSQEDFNLVKLNLENTVCELKKEVTSLERKIQIQVQELEQKREEADAMHAQL 782

Query: 291  VQNVVSSLGTALTEYQLRLLWKLSPRIV--LCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
                 + +        L  L   S   V  +  D +    + +    + +  H +     
Sbjct: 783  QDERSNHMQKEAALRALENLHSQSQEEVKQMARDVEHSNKKLSDLENNNLKLHDLSQGLK 842

Query: 349  NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
              V         + ++    +     +   + +V    ++  +       +        +
Sbjct: 843  KTVAELNSMKDSALLQQQKSSEKVSYLEAQVLVVRSEMEKMVQKTQMLDQE-LEHKNKEI 901

Query: 409  KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
                N +++Q  +   ++    RL+ L      E        ++ +    +    +  +Q
Sbjct: 902  SELQNSLQEQVQKCILAETSLLRLEDLHTNSQKEAKTLAHDLERLSEQLTEVENDRLDLQ 961

Query: 469  SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            +   + K +      E  L+L    H    Q   +          E  K  + L  + + 
Sbjct: 962  NISRELKNTISEINSEKDLMLLQQQHSLERQSYLEAQLLDALSEVEENKKEAQLLEENLA 1021

Query: 529  QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALYK 586
             K     ++   L E G   +  +    + +     +  E    ++D+ +   +   L  
Sbjct: 1022 HKNDELNDLQNNLEEEGHKRMHAEAALSMVENLHSKSQEEVGKLVMDLDKLENELSELQG 1081

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQ----IHQIES 633
            R   +     E++  I+ + ++ +A              L+S L ++ ++      ++++
Sbjct: 1082 RNSRMEELSYELQNTISLLNSEKDAALLQQQLSSERACDLMSQLSKIQLELEKAEEKMQT 1141

Query: 634  QE 635
             E
Sbjct: 1142 ME 1143


>gi|194886932|ref|XP_001976713.1| GG19865 [Drosophila erecta]
 gi|190659900|gb|EDV57113.1| GG19865 [Drosophila erecta]
          Length = 2012

 Score = 44.5 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 88/242 (36%), Gaps = 18/242 (7%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +  R   ++ I +   ++      +     R         +++  S+ L+         S
Sbjct: 1745 ETERDELTEEIANNANKVSLVIDEKRRLEARIATLEEELEEEQSNSEVLL-------DRS 1797

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-------FSDFVEQK 530
            +K  L+   L   L N  +  Q+     A +   N EL+   + +           +   
Sbjct: 1798 RKAQLQIEQLTTELANEKSNSQKNENGRALLERQNKELKAKLAEIETAQRTKVKATIATL 1857

Query: 531  YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRF 588
                  + ++L   G   LL+Q   +  D  +   T         V Q  +Q   L  R 
Sbjct: 1858 EAKIANLEEQLENEGKERLLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRI 1917

Query: 589  RLLSRQKEEIEKQIA-QVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSG 646
            +LL R  +E E+++  + T K + ++    +    E ++ +I+ ++++     G G  S 
Sbjct: 1918 KLLKRNLDETEEELQKEKTQKRKYQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSS 1977

Query: 647  RL 648
            RL
Sbjct: 1978 RL 1979


>gi|73956382|ref|XP_536692.2| PREDICTED: similar to Hook homolog 1 (h-hook1) (hHK1) [Canis
           familiaris]
          Length = 791

 Score = 44.5 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 37/340 (10%), Positives = 101/340 (29%), Gaps = 31/340 (9%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           DG                   +   +     L   +D         +    +    +   
Sbjct: 296 DGSFDDPNTMVAKKYFHAQLQLEQLQEENFRLEAAKDDYRVHCEELEKQLIEFQHRN--- 352

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
            ++    E      +  D             + ++  + +      +R +++ L +  + 
Sbjct: 353 DELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQKLQDLNDLRKQVKTLQETNMM 412

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPAI 497
                    ++  +    +   +   +            S R   L   +      H A+
Sbjct: 413 YMHNTVSLEEELKKANAARTQLETYKRQVQDLHNKLSSESKRADTLAFEMKRLEEKHEAL 472

Query: 498 LQEQYQELAD---IRYDNNELQ--KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           L+E+ + +     ++  N EL+  ++     +          E +   +    + E+  +
Sbjct: 473 LKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTDASATKSYENLAAEIMPVEYREVFIR 532

Query: 553 LDRQVRDAGLWSA-TTEANIVDVRQGYQQALA-----------LYKRFRLLSRQKEEIEK 600
           L  + +   L    T    I ++++  +Q                +R R L +Q E+++K
Sbjct: 533 LQHENKMLRLQQEGTENERIEELQEQLEQKHRKMNELETEQRLSKERIRELQQQIEDLQK 592

Query: 601 QIAQVTAKGE-------AEKTAILISILHEVHIQIHQIES 633
            + +  +K E        +K    +  L EV  ++ + + 
Sbjct: 593 SLQEQGSKSEGESSSKLKQKLEAHMEKLTEVQEELQKKQE 632


>gi|291547760|emb|CBL20868.1| hypothetical protein CK1_30100 [Ruminococcus sp. SR1/5]
          Length = 624

 Score = 44.5 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 15/98 (15%)

Query: 1  MNYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          M Y  + I        +++ +        +                HD          S 
Sbjct: 1  MQYTEEQIARA-NQTDLASFLNARGEQLVKSGREYRWKK-------HD------SVTVSG 46

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97
            +Y  S +  G  + F+      +F E+V+ L    G
Sbjct: 47 NRWYRHSQNKGGYPVDFVMEFYHATFPEAVKMLIDEEG 84


>gi|206603080|gb|EDZ39560.1| Putative replicative helicase [Leptospirillum sp. Group II '5-way
           CG']
          Length = 448

 Score = 44.5 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 12/128 (9%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  L+  L+  P +L++     +   +      ++   +     +     P  I  RL  
Sbjct: 22  EKNLISCLLQRPDLLRDDSLSFSVDDFHFQPHCRIAQAILDLDADGIVPDPGMIANRLGL 81

Query: 544 RG-----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-----RLLSR 593
           +G       +L   +              E    + RQ    A  L +         ++R
Sbjct: 82  KGPDLDYLEDLTWMVASPSNARHYEGKLKEVA--EKRQAIFDADKLIRAANSNVPEDIAR 139

Query: 594 QKEEIEKQ 601
            + EIEK+
Sbjct: 140 VRGEIEKR 147


>gi|154354985|ref|NP_037444.2| protein Hook homolog 2 isoform 1 [Homo sapiens]
 gi|296439323|sp|Q96ED9|HOOK2_HUMAN RecName: Full=Protein Hook homolog 2; Short=h-hook2; Short=hHK2
          Length = 719

 Score = 44.5 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 84/262 (32%), Gaps = 23/262 (8%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  DE  +           +   + R    + +R +++QL ++         +   +  R
Sbjct: 295 DEMDELRQSSERAGQLEATLTSCRRRLGELRELRRQVRQLEERNAGHAERTRQLEDELRR 354

Query: 456 HRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLL---TLINHPAILQEQYQELADIRYD 511
               +     +  Q   ++G+  ++    E  L         + ++ +E+ + LA+    
Sbjct: 355 AGSLRAQLEAQRRQVQELQGQRQEEAMKAEKWLFECRNLEEKYESVTKEKERLLAERDSL 414

Query: 512 NNELQKLWSFLFS---DFVEQKYFLP-----EEIHQRLCERGFGELLKQLDRQVRDAGLW 563
               ++L                  P     + +   +      E L +L  + +     
Sbjct: 415 REANEELRCAQLQPRGLTQADPSLDPTSTPVDNLAAEILPAELRETLLRLQLENKRLCRQ 474

Query: 564 SATTEANIVDVRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKGEAE 612
            A       ++++  + A                +   L  Q E+++K + +   K E  
Sbjct: 475 EAADRERQEELQRHLEDANRARHGLETQHRLNQQQLSELRAQVEDLQKALQEQGGKTEDA 534

Query: 613 KTAILISILHEVHIQIHQIESQ 634
            + +L   L E   ++H+ + +
Sbjct: 535 ISILLKRKLEEHLQKLHEADLE 556


>gi|320580809|gb|EFW95031.1| DNA repair protein RAD50 [Pichia angusta DL-1]
          Length = 732

 Score = 44.5 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 48/406 (11%), Positives = 111/406 (27%), Gaps = 34/406 (8%)

Query: 252 FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLW 311
             A     ++     +   +  + +  G    ++   A ++  V      ++   L  + 
Sbjct: 97  SLAAFKNARTGTTSFKTRENQLVAIHNGEKQTVTSKMADIETAV-PQQLGVSRAVLNYVI 155

Query: 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP---DSFIRCYGK 368
                  L    D   L+  +  I   +  +        +      D    ++ +     
Sbjct: 156 FCHQDESLWPISDSASLKKRFDEIFDSVKFIKVLETFRAIQKEMNVDIRVINNTVEHLRN 215

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ---KLRYYYS 425
                    +               S     E   +           +D      R  Y 
Sbjct: 216 DRARAHHKHAQVAELNRQVDRLNAESETLAREIEAVNKEADRLFATNQDYEKTISRLEYL 275

Query: 426 QA----IRD----------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +     +            R+     +   +   +     +     +Q         + L
Sbjct: 276 RQQESSLAQQMDVIRSTTTRVDLPDAQIREQLDNFANVLVEKRSAVEQLRVQIESRSAQL 335

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            + +     S+RE   L  L       + + Q L          Q+L          +  
Sbjct: 336 ARAREEYNTSVREEGRLRGLFERHEQNRSEKQRLE---------QQLDQTRLDALAAEYA 386

Query: 532 FLPEEIHQRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                    L +  F    L ++L R+ + A       +A +   R  +QQ L+L    +
Sbjct: 387 DKEAAHKAALEDVEFELTTLKEELAREAQHAEYVRNDVDA-LETKRAKFQQILSLSSSNQ 445

Query: 590 L-LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             L R++ E+  +  ++    ++   A +   + +   QI Q+E+Q
Sbjct: 446 ARLERERTELAAEELELQQLRDSSPLAAINEKIAQTEKQIRQLETQ 491


>gi|307719021|ref|YP_003874553.1| chaperone ClpB [Spirochaeta thermophila DSM 6192]
 gi|306532746|gb|ADN02280.1| chaperone ClpB [Spirochaeta thermophila DSM 6192]
          Length = 870

 Score = 44.5 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 41/410 (10%), Positives = 124/410 (30%), Gaps = 16/410 (3%)

Query: 241 LFHKGKNLY-NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           +F +    Y     A+  +++  R   +   S++  L +   D+ +L +    + V    
Sbjct: 128 VFQRNGLTYEGISHAIQGIRQGRRVTSQDPESTYQALEKYCRDLTALARQEKLDPVIGRD 187

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG--NRVNFVLLSRGE 357
             +      LL +     VL                  ++   +P        + L  G 
Sbjct: 188 EEIRRMIQVLLRRTKNNPVLIGPPGVGKTAIVEGLARRIVAGDVPDSLKDKRILALDLGA 247

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
                          K ++  +   +       +          AE      N    +K 
Sbjct: 248 LVAGAKYRGEFEERLKAVINEVIASEGKIILFIDELHTLIGAGAAEGATDAANL---LKP 304

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R          + + ++K+I + + + R ++  +        +  +++    + ++ 
Sbjct: 305 PLSRGELRTIGATTVDE-YRKHIEKDAAFERRFQPISVAEPSVEDTISILRGLKERYEVH 363

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
               + + A++   +     +  ++     I   +    +L   + S   E      + +
Sbjct: 364 HGVRITDEAIVAAAVLSDRYITSRFLPDKAIDLIDEAASRLKMEIESMPTEIDQLDRKIL 423

Query: 538 HQRLCERGFGELLK-QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
              +  +   +        +++      +  +     +   +Q    +    R L+ + E
Sbjct: 424 QLTIERQALSKEKDPASQERLKKIEQQLSQLKEERDKLYLKWQNEKKIIDEIRKLNAEIE 483

Query: 597 EIEKQIAQVTAKGEAEKTAIL--------ISILHEVHIQIHQIESQEAMI 638
           ++  +  Q   +G  +K A +           L E    + +++ +E+ +
Sbjct: 484 DLTIRETQYERQGNLDKAAEIKYGLLPQKRRELEEKTRALERLKGEESSL 533


>gi|307717829|ref|YP_003873361.1| hypothetical protein STHERM_c01120 [Spirochaeta thermophila DSM
           6192]
 gi|306531554|gb|ADN01088.1| hypothetical protein STHERM_c01120 [Spirochaeta thermophila DSM
           6192]
          Length = 798

 Score = 44.5 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 14/159 (8%)

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFGELLKQ 552
           +P+ ++   + L+ +       ++ +  L        +    E+         F E +  
Sbjct: 524 YPSAMEAYARILSRLS-RTPAGRQAFEGLTRSMRAYNRQVEQEDTAHEREAARFMEQISS 582

Query: 553 LDRQVR------------DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L+ Q+                +   T      +  Q  ++   L +    L+ + +E+ +
Sbjct: 583 LEEQIEALRSENTRLREERDRMARETPTLPPEEEAQLQREIERLTQENDTLTVKIQELTR 642

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           Q+A    + EA   A     L  +  +I  +E  EA +E
Sbjct: 643 QLAAAQEELEARPPATTDEELASLKARIETLEEAEARLE 681


>gi|195400855|ref|XP_002059031.1| GJ15351 [Drosophila virilis]
 gi|194141683|gb|EDW58100.1| GJ15351 [Drosophila virilis]
          Length = 603

 Score = 44.5 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 93/272 (34%), Gaps = 8/272 (2%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
             ++          E   +   T    AE           +++ + +      + D L Q
Sbjct: 72  YHKASIESVKKKSNEITEKMLKTNMAIAERNQENALLRKQLQNIEQKVEELNKMSDALGQ 131

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT---- 490
             +    + +     +       D++    +   +            L E   L      
Sbjct: 132 ENRNLREKCTAVEEKYVSLETAYDKEFALLKATLAKQKAELKQNNKLLEELKALQLEKQQ 191

Query: 491 LINHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--EIHQRLCERGFG 547
           ++     + Q++  E+A+++  N +LQ   S + + F + K    E  E  Q        
Sbjct: 192 MVARLETMAQQKADEMAELQIKNAQLQLQISEVEAAFEQYKLQSVEQHETVQAKLTAELQ 251

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           +   +L  Q+  +    A  +A +  +    ++ L L +  + L+ +  E+EK++     
Sbjct: 252 QQAAELTEQIEKSERREADLQATLAKLNDVEKRGLKLQQINQQLTLEVSEVEKRLN-AEI 310

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + +  K   L S + ++     + + +  ++E
Sbjct: 311 EQQKLKIEELNSQIRKLKSDEQRYQDEIELLE 342


>gi|257464882|ref|ZP_05629253.1| TraA; conjugal transfer protein TraA [Actinobacillus minor 202]
 gi|257450542|gb|EEV24585.1| TraA; conjugal transfer protein TraA [Actinobacillus minor 202]
          Length = 616

 Score = 44.5 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 32/328 (9%), Positives = 102/328 (31%), Gaps = 18/328 (5%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFE-----KLIVES 378
           D   L    K +   +  +        +      D D+F+    +         +   + 
Sbjct: 281 DLKFLELQQKELQKQIEIMNNFKSDYILEEFNKIDLDNFLERQQQAILNLRKDIEDYEQE 340

Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438
                  +          T ++  + +  +K    +   +  +  +++ I  ++  L  +
Sbjct: 341 DEANKRRYAFLVSEFYKATQEKLFDSKKDIKQFFKNAITETRKEEWTEDIAYQVDLLSYQ 400

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQR---LMQSSLVKGKLSKKPSLREAALLLTL---- 491
                  Y    + N     +    +R   L+         S   +  E   L  +    
Sbjct: 401 IFRNQEKYIDKAQFNIYRNIKAQEKERYNLLIDKIENGTGNSDDFTEEEWKFLAYIDRKQ 460

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
            N   I +    +L ++     +  K  S +  + ++   +   +I ++  +      +K
Sbjct: 461 ENSKKIFRGAVDDLIELNLSEEDFNKYVSIVVEEHIKANDYGLSDIEKKYKQAEVTNYIK 520

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ----KEEIEKQIAQVTA 607
           +    ++              ++R   ++    +K      ++     +E +  +++V +
Sbjct: 521 RNFDSIKQNKEEWIKKNEEWEELRIKSKEEREEFKNKLEEIKENSSNIKEAKDLLSEVVS 580

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQE 635
           + +      LI     ++  +++++ QE
Sbjct: 581 EHDDNL--RLIMKYMNINTFLNEMKQQE 606


>gi|242091131|ref|XP_002441398.1| hypothetical protein SORBIDRAFT_09g025900 [Sorghum bicolor]
 gi|241946683|gb|EES19828.1| hypothetical protein SORBIDRAFT_09g025900 [Sorghum bicolor]
          Length = 913

 Score = 44.5 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + I   +              + + +      
Sbjct: 393 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALE------KEKDKASKARLVE 446

Query: 567 TEANIVDVRQGYQQALALYKRF-------RLLSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
            +  + D+R   Q     Y++        R L +++EE++  + +   + +  + A L  
Sbjct: 447 VKKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFSLQEAERRMDLARVADLKY 506

Query: 619 SILHEVHIQIHQIESQ 634
             L E+   I ++ES+
Sbjct: 507 GALQEIDAAISKLESE 522


>gi|239815073|ref|YP_002943983.1| ParB domain protein nuclease [Variovorax paradoxus S110]
 gi|239801650|gb|ACS18717.1| ParB domain protein nuclease [Variovorax paradoxus S110]
          Length = 677

 Score = 44.5 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 5/122 (4%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           +   LFSD  +  Y     +   L      ++++Q+  +       +    A  + V Q 
Sbjct: 245 VRRDLFSDEEQGGYLTDAGLLDTLARHKLADVVEQVQLEGWGWVEVAPRATAAELHVFQR 304

Query: 578 YQQALA-----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            ++          KR   L  ++ E++ ++    A+   +    L   L+ +  ++  IE
Sbjct: 305 VRRTRRDPSRAEAKRIAKLEGKQNELQDRLDDEDAELSEDGVQALQEELNRLGNELEAIE 364

Query: 633 SQ 634
             
Sbjct: 365 QT 366


>gi|238021540|ref|ZP_04601966.1| hypothetical protein GCWU000324_01440 [Kingella oralis ATCC 51147]
 gi|237868520|gb|EEP69526.1| hypothetical protein GCWU000324_01440 [Kingella oralis ATCC 51147]
          Length = 468

 Score = 44.5 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 55/182 (30%), Gaps = 12/182 (6%)

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
                    + +    L       E +LL  L+   +        LA+  +  +E + ++
Sbjct: 2   PETPIPDNDTEVRNIALPPHSIEAEQSLLGGLMLENSAYDRIADILAENDFYRHEHKLIY 61

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             + +   E +      + + L          QL        L +           + Y 
Sbjct: 62  RAISTLINESRPADIVTVQEALERN------DQLTHAGGFDYLLTLAQSTPSAANIRRYA 115

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + +    R R + RQ  E   +IA+     + +    L+        QI   ES     +
Sbjct: 116 EIV----RERSIIRQLAETGTEIARNAYNPQGKSAEQLLDEAENQVFQIA--ESTAKSKQ 169

Query: 640 GF 641
           GF
Sbjct: 170 GF 171


>gi|168487073|ref|ZP_02711581.1| pneumococcal surface protein A [Streptococcus pneumoniae
           CDC1087-00]
 gi|183570000|gb|EDT90528.1| pneumococcal surface protein A [Streptococcus pneumoniae
           CDC1087-00]
          Length = 776

 Score = 44.5 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L ++       +  L++++ +  +      A+ 
Sbjct: 270 ELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLEKEISNLEI--LLGGADP 327

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            D     Q  LA   +   L++++ E+EK +  +  +G+ +      +   E+  +  ++
Sbjct: 328 EDDTAALQNKLAA--KQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDKKADEL 385

Query: 632 ESQEAMIE 639
           +++ A +E
Sbjct: 386 QNKVADLE 393



 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 67/193 (34%), Gaps = 15/193 (7%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLT 490
           Q    K  TE            + +D+        +      +L  K +  E  +  L  
Sbjct: 261 QAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLEKEISNLEI 320

Query: 491 LI--NHPA-----ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           L+    P      +  +   + A++     EL+KL   L  +   Q     E     L +
Sbjct: 321 LLGGADPEDDTAALQNKLAAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDK 380

Query: 544 R--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
           +       +  L++++ +  +      A+  D     Q  LA   +   L + ++E++  
Sbjct: 381 KADELQNKVADLEKEISNLEI--LLGGADSEDDTAALQNKLA--TKKAELEKTQKELDAA 436

Query: 602 IAQVTAKGEAEKT 614
           + ++   G+ E+T
Sbjct: 437 LNELGPDGDEEET 449



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 48/130 (36%), Gaps = 3/130 (2%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            +   Q++   +    VE K    E++   +          Q         L  A  +  
Sbjct: 185 SDEAAQEV--EVAKKEVEAKELEIEKLQDEISTLEQEVATAQHQVDNLKKLLAGADPDDG 242

Query: 571 IVDVRQGYQQ-ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
              +    ++    L  +   L++++ E+EK +  +  +G+ +      +   E+  +  
Sbjct: 243 TEVIEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDKKAD 302

Query: 630 QIESQEAMIE 639
           +++++ A +E
Sbjct: 303 ELQNKVADLE 312


>gi|50308411|ref|XP_454207.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643342|emb|CAG99294.1| KLLA0E05787p [Kluyveromyces lactis]
          Length = 1228

 Score = 44.5 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 78/219 (35%), Gaps = 13/219 (5%)

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR  Y++ +R    +  Q  +           + A   +    + +     L       +
Sbjct: 618 LRASYNEEVRQ--TEEIQTQLNALRAQNEELSQQASVAEANYHAVQTQNEDLQTQLQQAQ 675

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  L   L     +  +  Q+LA+++ +N + ++    + +  +E        +  
Sbjct: 676 EE--ERQLKERLAQFNTLSSQLQQQLAEVQ-ENAKAERSRVDIHAKQLELSEMTANNLQT 732

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            +      + L     + ++   + AT EA   ++   ++Q LA  +          E+E
Sbjct: 733 EIQS--LEQTLGIYLSKHKELDDYKATIEAQHAEMENKHKQYLATSEEVHA-----RELE 785

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ-EAM 637
            Q      + + +     +S L E+   +++ +S+ EA 
Sbjct: 786 VQSRTAEIEKQEQLYRDQVSRLQELFNDLNKRKSEFEAA 824


>gi|73958823|ref|XP_862624.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 17 [Canis familiaris]
          Length = 2008

 Score = 44.5 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 913  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 972

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 973  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1032

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1033 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1092

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1093 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1149

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1150 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1190


>gi|301772226|ref|XP_002921526.1| PREDICTED: dynactin subunit 1-like isoform 1 [Ailuropoda
           melanoleuca]
          Length = 1281

 Score = 44.5 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ +  
Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELNQA 419

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 479

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595



 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 66/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+     S + E+  Q+      E M+E
Sbjct: 398 KNQELEVVRQQRERLQEELNQAESTIDELKEQVDAALGAEEMVE 441



 Score = 37.9 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330


>gi|158295904|ref|XP_557151.3| AGAP006472-PA [Anopheles gambiae str. PEST]
 gi|157016256|gb|EAL40091.3| AGAP006472-PA [Anopheles gambiae str. PEST]
          Length = 2261

 Score = 44.5 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 27/268 (10%), Positives = 88/268 (32%), Gaps = 16/268 (5%)

Query: 373  KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
            +L+ +     D+  + E   ++    ++  +    L++ +  +++   +    +    R+
Sbjct: 917  QLMDQMQDNEDLRKQFEEAKQTALANEKDVQRREELEHEMGPLRESLEKANAEREALQRV 976

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
                ++ ++                  K     + +  +           +E       +
Sbjct: 977  CDSLREEVSALKASIESHASQVETIVAKKEQLSVERDEVKIRLEEAITKQKET------M 1030

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                 +Q   Q  A++   N E+ +L   +            E+             L Q
Sbjct: 1031 KELETVQAAKQ--AEVATVNEEIDRLKQEIVKLETSIGEQSVEKELLATENSRLSAQLVQ 1088

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA- 611
            L ++ + AG  +A+ +    D+++  Q       R   L  + E  + ++    ++    
Sbjct: 1089 LQKEQQLAG--AASDQKAREDLQRLQQLKDEADGRVVQLEVELEVFKNKLDAAESEQNER 1146

Query: 612  -----EKTAILISILHEVHIQIHQIESQ 634
                  +   L+  + E+ +++ ++++ 
Sbjct: 1147 FQQWEAEKQSLVKEISELQLRMEELQAS 1174



 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/221 (9%), Positives = 61/221 (27%), Gaps = 16/221 (7%)

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    +   +RL+        E         +      +K      +++   + + +  
Sbjct: 1600 ERSEAVKEETERLRHAITALEDEKQRLQEATDRLRVELTEKERHTAELEAVQQQKESALD 1659

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               +E   L   +    +  +       +   N   Q     + +   E++         
Sbjct: 1660 EMRKENNDLTIAVQ--ELSAKIVNLEEQVD-SNEASQ--RKTIDTLVQERQEQDAALAAL 1714

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR----FRLLSRQK 595
            +         L  +++Q          T+A + +      +  A  +       +L R+ 
Sbjct: 1715 KQALTVAEAKLTDVEKQHDQVRDELRDTKAALEESLAARLRLEADIEESSSVRDVLEREL 1774

Query: 596  EEIEKQIAQVTAKGEAEKTAI-------LISILHEVHIQIH 629
             +++  +  +  K   E+          L   L E   ++ 
Sbjct: 1775 RDLKSDLESLDHKLANERYEQERAVSAGLRRELDEKRKELE 1815


>gi|162458166|ref|NP_001104935.1| heat-shock protein 101 [Zea mays]
 gi|4584957|gb|AAD25223.1|AF077337_1 heat shock protein 101 [Zea mays]
 gi|4928488|gb|AAD33606.1|AF133840_1 heat shock protein HSP101 [Zea mays]
          Length = 912

 Score = 44.5 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + I   +              + + +      
Sbjct: 393 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALE------KEKDKASKARLIE 446

Query: 567 TEANIVDVRQGYQQALALYKRFRL-------LSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
               + D+R   Q     Y++ +        L +++EE++  + +   + +  + A L  
Sbjct: 447 VRKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAERRMDLARVADLKY 506

Query: 619 SILHEVHIQIHQIESQ 634
             L E+   I ++ES+
Sbjct: 507 GALQEIDAAISKLESE 522


>gi|73974726|ref|XP_539204.2| PREDICTED: similar to plectin 1 isoform 1 isoform 1 [Canis
            familiaris]
          Length = 4686

 Score = 44.5 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 62/211 (29%), Gaps = 23/211 (10%)

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
             E     R   + A  + ++     + +      +  ++ +  E  L    +        
Sbjct: 2281 AEQEAVRRAQAEQAALKQKQVADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ------- 2333

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              +        + ELQ+L + +     ++     E    R+      +L  +++ + R  
Sbjct: 2334 LEETDHQKSILDEELQRLKAEVTEAARQRNQVEEELFSVRVQMEELSKLKARIEAENRAL 2393

Query: 561  GLWSATT-------------EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQ 604
             L                  +      R       A   R      L++Q+   EK + +
Sbjct: 2394 ILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKE 2453

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                 +        + L +   ++ Q ++++
Sbjct: 2454 KMQAVQEATRLKAEAELLQQQKELAQEQARQ 2484



 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 19/274 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       +RE    +    +  AEL          +  + 
Sbjct: 1852 QELIRLRAETEQGEQQRQLLEEELARLQREAAAATHKRQELEAELAKVRAEMEVLLASKA 1911

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +   +          +     ++    ++L +    + +   +
Sbjct: 1912 RAEEESRSTSEKSKQRLEAEASRFRELAEEAARLRALAEETKRQRQLAEEDAARQRAEAE 1971

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------FLFSDFVEQKYFL 533
              L E   L  +     +  E    L +   +N  L++L            +   Q    
Sbjct: 1972 RVLAEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKAD 2029

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             EE   +L +    EL                  E  +   RQ  ++ LAL   F   + 
Sbjct: 2030 IEERLAQLRKASENEL-----------ERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 2078

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             K E+E ++ ++ +  E    +   + L     +
Sbjct: 2079 GKAELELELGRIRSNAEDTLRSKEQAELEATRQR 2112



 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 84/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+        +   +   +     + + +      Q  ++ L+++ +  + + 
Sbjct: 1346 RQLRYYRESADPLGTWLQDAKQRQERIQAVPLANSQAVREQLQQEKELLEEIERYGEKVD 1405

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E     + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1406 ECQQLAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1462

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1463 SEL---TTLTSQYIKFIRETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1519

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTA----- 615
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1520 QAKAQAEREAEELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKARQV 1579

Query: 616  --------ILISILHEVHIQIHQIESQEAMIEG 640
                     +   +  V +Q+   E Q    EG
Sbjct: 1580 EAAERSRVRIEEEIRVVRLQLEATERQRGGAEG 1612



 Score = 38.3 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1817 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLVAEQELIRLRAETEQGEQQRQLLEEELA 1876

Query: 604  QVTAKGEAE--KTAILISILHEVHIQIHQIESQEAMIE 639
            ++  +  A   K   L + L +V  ++  + + +A  E
Sbjct: 1877 RLQREAAAATHKRQELEAELAKVRAEMEVLLASKARAE 1914



 Score = 37.6 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 88/282 (31%), Gaps = 20/282 (7%)

Query: 373  KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
            ++ +E L  +    + E         D            +  + ++  R   +     RL
Sbjct: 2373 RVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARL 2432

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-----AAL 487
            +QL ++ + +         K      Q+    +     L + K   +   R+       +
Sbjct: 2433 RQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARQLQEDKEQM 2492

Query: 488  LLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCER 544
               L       Q   +     + + + E ++L   +      Q       +   ++  E 
Sbjct: 2493 AQQLAQETQGFQRTLEAERQRQLEMSAEAERLKLRVAEMSRAQARAEEDAQRFRKQAEEI 2552

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ--- 601
            G      +L  Q +   + +   +    D       A  L      L R+KE+++++   
Sbjct: 2553 GEKLHRTELATQEKVTLVHTLEIQRQQSD-----HDAERLRAAITELEREKEKLQEEATL 2607

Query: 602  IAQVTAKGEAEKTAILISILHEVHI----QIHQIESQEAMIE 639
            + Q + + +  +   L+     +      +  ++  +E  IE
Sbjct: 2608 LQQKSEEMQVVQQEQLLQETRALQESFLSEKDRLLQRERFIE 2649


>gi|30264620|ref|NP_846997.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           anthracis str. Ames]
 gi|47530091|ref|YP_021440.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49187442|ref|YP_030694.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           anthracis str. Sterne]
 gi|65321918|ref|ZP_00394877.1| COG1193: Mismatch repair ATPase (MutS family) [Bacillus anthracis
           str. A2012]
 gi|165871464|ref|ZP_02216111.1| MutS2 family protein [Bacillus anthracis str. A0488]
 gi|167635560|ref|ZP_02393872.1| MutS2 family protein [Bacillus anthracis str. A0442]
 gi|167641563|ref|ZP_02399810.1| MutS2 family protein [Bacillus anthracis str. A0193]
 gi|170688257|ref|ZP_02879467.1| MutS2 family protein [Bacillus anthracis str. A0465]
 gi|170708684|ref|ZP_02899122.1| MutS2 family protein [Bacillus anthracis str. A0389]
 gi|177653140|ref|ZP_02935427.1| MutS2 family protein [Bacillus anthracis str. A0174]
 gi|190566985|ref|ZP_03019901.1| MutS2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|227817334|ref|YP_002817343.1| MutS2 family protein [Bacillus anthracis str. CDC 684]
 gi|229603197|ref|YP_002868830.1| MutS2 family protein [Bacillus anthracis str. A0248]
 gi|254686957|ref|ZP_05150815.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254736658|ref|ZP_05194364.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254741696|ref|ZP_05199383.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           anthracis str. Kruger B]
 gi|254754707|ref|ZP_05206742.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           anthracis str. Vollum]
 gi|254757539|ref|ZP_05209566.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           anthracis str. Australia 94]
 gi|81714920|sp|Q81L40|MUTS2_BACAN RecName: Full=MutS2 protein
 gi|254766187|sp|C3PAE0|MUTS2_BACAA RecName: Full=MutS2 protein
 gi|254766188|sp|C3L808|MUTS2_BACAC RecName: Full=MutS2 protein
 gi|30259278|gb|AAP28483.1| MutS2 family protein [Bacillus anthracis str. Ames]
 gi|47505239|gb|AAT33915.1| MutS2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181369|gb|AAT56745.1| MutS2 family protein [Bacillus anthracis str. Sterne]
 gi|164712761|gb|EDR18291.1| MutS2 family protein [Bacillus anthracis str. A0488]
 gi|167510448|gb|EDR85847.1| MutS2 family protein [Bacillus anthracis str. A0193]
 gi|167528980|gb|EDR91735.1| MutS2 family protein [Bacillus anthracis str. A0442]
 gi|170126364|gb|EDS95253.1| MutS2 family protein [Bacillus anthracis str. A0389]
 gi|170667763|gb|EDT18516.1| MutS2 family protein [Bacillus anthracis str. A0465]
 gi|172081664|gb|EDT66735.1| MutS2 family protein [Bacillus anthracis str. A0174]
 gi|190561976|gb|EDV15945.1| MutS2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|227002648|gb|ACP12391.1| MutS2 family protein [Bacillus anthracis str. CDC 684]
 gi|229267605|gb|ACQ49242.1| MutS2 family protein [Bacillus anthracis str. A0248]
          Length = 786

 Score = 44.5 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L      L         F   +    L  R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTHKLLIGVPGRSNAFEISKRLG-LSNRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606


>gi|299470937|emb|CBN79921.1| TTK-like [Ectocarpus siliculosus]
          Length = 967

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 26/256 (10%), Positives = 72/256 (28%), Gaps = 11/256 (4%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
                        A          +  + ++ R    +       +  +           
Sbjct: 11  ALAGGPGTYESLEAWKTRLQSKLADQKRAEQERAE-QERAEQERSEQERAEQERAEQERA 69

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
             ++  + R ++  +++         +   +    E  L         + +  +Q+L   
Sbjct: 70  EQERAEQERAEQERAEQERAEQERAEQERAEQERAEQELER---QSGDVGRWLHQDLGFD 126

Query: 509 RYDNNELQK-LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL------DRQVRDAG 561
              +      + +    +         E +   L +    ++L  L       R+  D  
Sbjct: 127 GRSSAVFGASIRACHLDNPKAIFAIDKETLEGVLGKVEMPDVLASLVIEAWCRRRKEDED 186

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                 E  +++ RQ  + A    +R   + R  +E+++  A       A K       L
Sbjct: 187 RRRVEAETALIEARQRAESAAEARRRQEEVERTNKELQEAEALARKNDAAAKAEAERQRL 246

Query: 622 HEVHIQIHQIESQEAM 637
               ++   ++ Q+A+
Sbjct: 247 EVAALEKAALQQQQAL 262


>gi|241982718|ref|NP_001155247.1| myosin-11 isoform 2 [Mus musculus]
          Length = 1972

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 99/287 (34%), Gaps = 22/287 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 877  ELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 936

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA R ++ Q       +        +K    +       + ++  ++        
Sbjct: 937  RGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSK 996

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKY 531
              +E  LL         + +    LA+       L KL      + S+        E+  
Sbjct: 997  LSKERKLLE------ERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSR 1050

Query: 532  FLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
               E++ ++L      F E +  L  Q+ +  +  A  E  +        + +A   +  
Sbjct: 1051 QELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIA---QKN 1107

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
               ++  E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1108 NALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1154


>gi|224086600|ref|XP_002307915.1| predicted protein [Populus trichocarpa]
 gi|222853891|gb|EEE91438.1| predicted protein [Populus trichocarpa]
          Length = 1259

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 82/244 (33%), Gaps = 5/244 (2%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH-LKNCINHIKDQKLRYYYS 425
                 ++L+  +  ++    + +   +S    D         LK     +K  + + + +
Sbjct: 910  KIDELQELLNSASRMMHAETQLQEAIQSLTLKDVETRDLNEKLKALEGQVKLYEEQAHEA 969

Query: 426  QAIRD-RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              I + R  +L +  +          +   +    +  S  L + +L   +       + 
Sbjct: 970  STISESRKGELEETLLKVTHLETVLEELKTKSGHFEKESGVLAEDNLKLTQELASYESKL 1029

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              L   L     IL E+   +  +       + L   L  +  + +  +     +   + 
Sbjct: 1030 RDLEAKLST---ILSEKDGTIEQLHISKKAFEDLRQQLTDEGQKLQSQIESLKAEVAEKS 1086

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                 L++L++Q+  A +           +++ +    A  K    L  Q +E+E+++ +
Sbjct: 1087 ALQTSLEELEKQLTTAAVELKEQLEKEAALKKSFADLEAKNKEVSHLENQVKELEQKLQE 1146

Query: 605  VTAK 608
              AK
Sbjct: 1147 ADAK 1150



 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 78/223 (34%), Gaps = 15/223 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + +    ++  Q  ++E  G     ++    R+      +  ++ +   +      L+E
Sbjct: 343 LENLLTATKEDLQAKVSEMEGMKLRLQEEINTRESVEAGLKTHEAQVATVQEELAKVLKE 402

Query: 485 AALLLTLINH--------PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
              L   +            +  E  ++L     +  +   L S   S+  E +     +
Sbjct: 403 KEALEAAMADLTSNAAQMKELCGELEEKLKTSDENFCKADSLLSQALSNSAELEQ--KLK 460

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV---DVRQGYQQALALYKRFRLLSR 593
             + L             + +    L  A+ EA       +R+   + +A  K+   L +
Sbjct: 461 FLEDLHSESGAAAATASQKNLELEDLIRASNEAAEEAKSQLRELEIRFVAAEKKNVELEQ 520

Query: 594 QKE--EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           Q    E++   A+   +  +EK + L + L EV  + +Q+ +Q
Sbjct: 521 QLNLVELKSSDAERQVREFSEKISELSTTLKEVEGEKNQLSAQ 563


>gi|118594796|ref|ZP_01552143.1| Chromosome segregation protein SMC [Methylophilales bacterium
            HTCC2181]
 gi|118440574|gb|EAV47201.1| Chromosome segregation protein SMC [Methylophilales bacterium
            HTCC2181]
          Length = 1164

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 104/338 (30%), Gaps = 22/338 (6%)

Query: 300  TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
             A  E +   L     + +  F+ +    +   K ++ +   L     +     +     
Sbjct: 701  KAHCEEERNTLIIEYNKQLNLFEINKSRTQTVSKDMENLTLQLKESMEMLSAKKNS---I 757

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   +     +       +          E       +     EL  ++K  +N I+D +
Sbjct: 758  EEITKNIQSVSLTNEEHNNSKTQAEQLFYEKRTHLNESEKLEQELGYNIKVLVNKIEDVQ 817

Query: 420  LRYYYS-QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R     +   + L QL + +  +  G     ++  + + +   +              K
Sbjct: 818  ARLAILAKDKNELLTQLNESHSEDQQGNITLLQEELKGKLELKENAEKELILARDRVSEK 877

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE---QKYFLPE 535
            +  LRE         H   L    + L   R +  E   ++             +  + +
Sbjct: 878  ENKLREEETARLESQH--ALNPVIESLQQSRLNERECSVVFEQCCRTLNNCNMNEEVIEK 935

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            ++ + +       L + L++++   G  +    + +  +R+          R   + +Q 
Sbjct: 936  DLKEDVVLSDLEGLYENLEKKIERLGPVNLAAISELESIRE----------RQTYIQKQV 985

Query: 596  EEIEKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            E+++     +     K +AE    L     EV+   ++
Sbjct: 986  EDLQAASKTLQDAIQKIDAETREKLKLTYQEVNKNFNE 1023


>gi|47717727|gb|AAT37906.1| paracingulin [Homo sapiens]
          Length = 1302

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 95/290 (32%), Gaps = 10/290 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y +    +L      L +   + E    +     +   L           +D+ 
Sbjct: 972  QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDGMRLMEEELRDYQRAQDEA 1031

Query: 420  L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L  R    Q ++D   +L  K   +        +  A+    +   +    +S +  +  
Sbjct: 1032 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEAKVSQLEMELEEERNNSDLLSERI 1091

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLP 534
             +   +   L   L+   A  Q+       +   N +L+     L   +    E      
Sbjct: 1092 SRSREQMEQLRNGLLQERAARQDLECGKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQM 1151

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLL 591
            E     L +R   E   + + Q+ +  L     E  +    +      Q   L  R + +
Sbjct: 1152 EARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAM 1211

Query: 592  SRQKEEIEKQIAQVTAKGEA-EKTAILISILHE-VHIQIHQIESQEAMIE 639
             RQ EE E++I ++ +  +  ++       ++E +  Q++ ++    + +
Sbjct: 1212 KRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLRLKK 1261



 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 86/252 (34%), Gaps = 19/252 (7%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           +++++L I +      ++ +       +  R+R++   ++  ++H+          +  +
Sbjct: 614 EQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLE 673

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +     R     L + K+ ++    E   L        + +   +  +  R ++ E   L
Sbjct: 674 ESEGELRKNLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSAKRSEDREKGAL 728

Query: 519 WSFLFSDFVEQKYFLPE----EIHQRLCERGFGELLKQLDRQVRDAGLW----SATTEAN 570
              L     + +  L      E   R  ER    L   L  +V              +A 
Sbjct: 729 IEELLQAKQDLQDLLIAKEGREDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 788

Query: 571 IVDVRQGYQQA------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           +  +R+  ++A      LA         +   E+  ++ Q   +    ++  L   + ++
Sbjct: 789 LQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQL 848

Query: 625 HIQIHQIESQEA 636
             QI  ++  EA
Sbjct: 849 QRQIEDLKGDEA 860


>gi|15667366|emb|CAC42512.2| keratin alpha [Lampetra fluviatilis]
          Length = 629

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 96/275 (34%), Gaps = 38/275 (13%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           ++    ++ + +          +E AE    L+N  N +KD+  + Y        L  + 
Sbjct: 249 KAALEAEIDYWKGVIQEYTAKYEEEAESNKSLENEWNTLKDEVDKTY--------LSIVE 300

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            +   +         K   +   K      M  S          +  +A  L T +N   
Sbjct: 301 LQTKVQGVEDQIDLMKKLYNARVKEVQSAFMGVSTNAAVSITVDNYNQALDLTTALNE-- 358

Query: 497 ILQEQYQELA----DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-----RGFG 547
            ++  Y+ LA    +  + + + + +   +          L E   Q L        G  
Sbjct: 359 -VRGHYEALAAKSKEDAFSSVQSRII--QVVGAVQPGNQVLGEA-KQELRSLKMQMDGLR 414

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             + ++     +        EAN     + +Q  LA+      L R+ ++I+KQIAQ   
Sbjct: 415 REIDKIREANAELETQIQEAEANGHAQLEQWQDKLAV------LKRELDDIKKQIAQY-- 466

Query: 608 KGEAEKTAILISILHEVHIQIHQ----IESQEAMI 638
              A++   L++    + I+I      ++S+EA I
Sbjct: 467 ---AQEYQELLANKMALDIEIAAYRKLLDSEEARI 498


>gi|85714536|ref|ZP_01045523.1| hypothetical protein NB311A_20176 [Nitrobacter sp. Nb-311A]
 gi|85698421|gb|EAQ36291.1| hypothetical protein NB311A_20176 [Nitrobacter sp. Nb-311A]
          Length = 99

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 31 KTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH-VKGDHLS---FLSALLGCSF 85
                 +Y A  P   ++T  SF  N + G +  F+     GD +S   FL      S 
Sbjct: 27 GGRRQGREYVARNPRRTDRTAGSFRINMTTGRWADFATGDAGGDPISLAAFLFD---LSQ 83

Query: 86 IESVQRLAAIAGV 98
          I++ +RL+A+ G+
Sbjct: 84 IDAARRLSAMLGI 96


>gi|134112888|ref|XP_774987.1| hypothetical protein CNBF1510 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257635|gb|EAL20340.1| hypothetical protein CNBF1510 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1644

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 82/275 (29%), Gaps = 38/275 (13%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
                     +  E    L       +D+  R    Q I  R      +  ++       
Sbjct: 580 IHKHLNEMNKQLLETNAELAREAEAWRDEVER---LQDILHRAGIDADEDASQTGARSNR 636

Query: 450 WKKNARHRDQKGPSQRLMQSSL-------------VKGKLSKKPSLREAALLLTLI--NH 494
               +  R    P +     +              ++   S  PS     LL  L     
Sbjct: 637 SISQSHSRQLPAPPRHSPSRTPGSRDHSEIISQLSMRSGQSASPSKNAQDLLDGLSPEER 696

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIHQRLCERGFGELLK 551
            A++QE  + L  +  + N  +++ + L        + +    + +H ++      EL +
Sbjct: 697 AAVIQEMAERLESLEEEMNTREEVIAELQDKLEYAHQSQSPDVQSLHAQIE-----ELAR 751

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQ------ 604
           QL+   +      +       D    + +  +    + + L +      ++  +      
Sbjct: 752 QLEETEQVRVDLQSEFSMKTEDHAAKFTEICSGFESQVKSLEKDLASAREEADRLRAERT 811

Query: 605 -----VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                   +G +E+   L   + E+ +++  I+ Q
Sbjct: 812 RLEGLAEKEGSSEREEELRKQVREMEVELEAIKGQ 846



 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 26/277 (9%), Positives = 86/277 (31%), Gaps = 15/277 (5%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--SQAIRDRL 432
              +  + +M  + E+     NT +E            +  +   ++  +   + +  +L
Sbjct: 694 EERAAVIQEMAERLESLEEEMNTREEVIAELQDKLEYAHQSQSPDVQSLHAQIEELARQL 753

Query: 433 QQLFQKYITEHSGYGRYWKKNARHR----DQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           ++  Q  +   S +    + +A              + ++  L   +        E   L
Sbjct: 754 EETEQVRVDLQSEFSMKTEDHAAKFTEICSGFESQVKSLEKDLASAREEADRLRAERTRL 813

Query: 489 LTLI-------NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             L            + ++  +   ++     + + +         + +    E+     
Sbjct: 814 EGLAEKEGSSEREEELRKQVREMEVELEAIKGQAKDMHEETEELRGKIQLLNKEKEEATK 873

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                   +++  +  +D+   +   E ++  +    ++A            Q E+  +Q
Sbjct: 874 KFEDAERRVEEHQKLHQDSEHRAERAENDLETLSAELKEASNAQLAADEKLAQYEKELEQ 933

Query: 602 IAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEA 636
           + Q+  + E   ++    I  L+ +  Q+   + + A
Sbjct: 934 LDQLHEEKEKQLDQQQSEIQELNRLVQQLEAAQEKAA 970



 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/269 (10%), Positives = 76/269 (28%), Gaps = 21/269 (7%)

Query: 370  AFEKLIVESLPLVDML-----WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              E +  ++  + +         +           +  + E  ++      +D + R   
Sbjct: 839  ELEAIKGQAKDMHEETEELRGKIQLLNKEKEEATKKFEDAERRVEEHQKLHQDSEHR--- 895

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                 +R +   +    E                Q       +     + +        E
Sbjct: 896  ----AERAENDLETLSAELKEASNAQLAADEKLAQYEKELEQLDQLHEEKEKQLDQQQSE 951

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD--FVEQKYFLPEEIHQRLC 542
               L  L+      QE+    A+  +   EL+++   L      +E K     ++  +L 
Sbjct: 952  IQELNRLVQQLEAAQEKA---AENEWVKEELERVQKELEDVHKLLEDKEIQLGDLRGKLE 1008

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                 + L    R+       ++    +    +  +   +AL  R     R+   ++++I
Sbjct: 1009 VAEASKDLTSSQRRSPSGTSSTSDRGEDGHVAQNSFV--IALEDRLDEAYREIGRLKREI 1066

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIHQI 631
                 +  A +     + +  +  +   +
Sbjct: 1067 NTTPHRKSAIEVRD--ARIQALEREKAAL 1093



 Score = 37.9 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 85/296 (28%), Gaps = 28/296 (9%)

Query: 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382
            +      + +        +I   +       + + PD            + + E+    
Sbjct: 701 QEMAERLESLEEEMNTREEVIAELQDKLEYAHQSQSPDVQSLHAQIEELARQLEET---- 756

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
           + +        S  T D  A+         + +K  +     ++   DRL+    +    
Sbjct: 757 EQVRVDLQSEFSMKTEDHAAKFTEICSGFESQVKSLEKDLASAREEADRLRAERTRLEGL 816

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
               G   ++    +  +     L         + ++        +  L        +++
Sbjct: 817 AEKEGSSEREEELRKQVREMEVELEAIKGQAKDMHEETEEL-RGKIQLLNKEKEEATKKF 875

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL------------L 550
           ++         E QKL         E+     E +   L E    +L            L
Sbjct: 876 EDAER---RVEEHQKLHQD-SEHRAERAENDLETLSAELKEASNAQLAADEKLAQYEKEL 931

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-------FRLLSRQKEEIE 599
           +QLD+   +        ++ I ++ +  QQ  A  ++          L R ++E+E
Sbjct: 932 EQLDQLHEEKEKQLDQQQSEIQELNRLVQQLEAAQEKAAENEWVKEELERVQKELE 987


>gi|291335583|gb|ADD95193.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C507]
          Length = 794

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 82/231 (35%), Gaps = 18/231 (7%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + +    Q L  ++        +      + R+++   ++  + +L     + +    E 
Sbjct: 275 RLLAQEQQALTGRFGDPTGNAQKLQDIQQQIRNRQLEIEQSAERTLEVRAKTLQRLNNEK 334

Query: 486 AL----LLTLINHPAIL-------QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L    L  L     ++       +E  ++L    +    L++    +     ++  F  
Sbjct: 335 SLQTDSLQVLALKNQLVKGQGTLTEENVKQLKKQIFQAEFLEERQHLINRAIKDEISFRA 394

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY-------KR 587
             +          E L  L++    A     T E     + +  ++ +A Y       ++
Sbjct: 395 AAVAIETKRVNLEEALAALNKPKDPAKPRKLTAEETGEGIARRLREQIAAYEELDPFARQ 454

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
             ++  ++E I+++I +V  +   ++  +  + L  + I   + + Q  +I
Sbjct: 455 MAVIEAERESIQERINKVKDEELRKELELAANKLKGLKIAKEEAKIQNEII 505


>gi|241982716|ref|NP_038635.2| myosin-11 isoform 1 [Mus musculus]
          Length = 1938

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 99/287 (34%), Gaps = 22/287 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 877  ELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 936

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA R ++ Q       +        +K    +       + ++  ++        
Sbjct: 937  RGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSK 996

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKY 531
              +E  LL         + +    LA+       L KL      + S+        E+  
Sbjct: 997  LSKERKLLE------ERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSR 1050

Query: 532  FLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
               E++ ++L      F E +  L  Q+ +  +  A  E  +        + +A   +  
Sbjct: 1051 QELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIA---QKN 1107

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
               ++  E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1108 NALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1154


>gi|269836474|ref|YP_003318702.1| ATP-dependent chaperone ClpB [Sphaerobacter thermophilus DSM 20745]
 gi|269785737|gb|ACZ37880.1| ATP-dependent chaperone ClpB [Sphaerobacter thermophilus DSM 20745]
          Length = 870

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 69/190 (36%), Gaps = 6/190 (3%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R ++           +  +++    + +L  K  + ++AL+   +   
Sbjct: 320 YRKYIEKDAALERRFQPVYVGEPSVEDTISILRGLRERYELHHKVRILDSALVAAAVLSH 379

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             +  +Y     I   +    +L   + S   E        +   +      E L++   
Sbjct: 380 RYITNRYLPDKAIDLVDEAAARLRMEITSMPAELDELHRRIMQLEIE----REALRKERD 435

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
                 L     E    D+R+  Q   + +++ R   ++  E+++QI Q   + E  + A
Sbjct: 436 DASKQRLQELERELA--DLREQEQVLRSQWEQEREAIQRISELKEQIEQTRHEIEQAQRA 493

Query: 616 ILISILHEVH 625
              +   E+ 
Sbjct: 494 ADYARASELQ 503


>gi|268530750|ref|XP_002630501.1| C. briggsae CBR-IFT-74 protein [Caenorhabditis briggsae]
          Length = 626

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 49/412 (11%), Positives = 125/412 (30%), Gaps = 39/412 (9%)

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309
               A     K     ++           G  D   L     +    +   A  + +L  
Sbjct: 141 GVLRAKQNAIKVEISKMKEKRD------RGIRDRNELHAYETRASSQAQEIAELQGKLLD 194

Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
           L K+  +I L  D  D  L A            +     N       E     I    + 
Sbjct: 195 LNKIMEKIQLNGDMSDIELEANKMKEQADEMKALTEEAFNERAAKEEECQRLEIEVEEQK 254

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL--------- 420
              + +  ++         + ++ +    +  A++E   +   + + + ++         
Sbjct: 255 KLNEAVTHAMDPQMKEKYEDLKSEAKLLRERVAKMEARNEELDDKLSNYEIKIRSNPFKK 314

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR------------LMQ 468
           R    Q   D L++  +K + +            +  +                     Q
Sbjct: 315 RAVTLQDTLDALKKEEEKLMEDMQNALTPEAWKEKIVESMKQLNSDLLVIEKQHKALKDQ 374

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            SL   +L +  S  EA ++     +  +L +    L +   D  +  KL      ++ +
Sbjct: 375 ISLASEELHEYDSQGEAQIMAHHTKYLQLLSK-SAMLDETPEDYPQKLKLAQQENEEYAD 433

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----VDVRQGYQQALA 583
                  +I   L +   G+ +  LD +  +    +     ++      ++       LA
Sbjct: 434 AIVLNLRKISANLKKVNLGDQITDLDERGLNMNSGNIEELKDMHVRLQEEIISTEDMELA 493

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           + +    ++ + + +++ +  +   G+++        L E+  +   +E++E
Sbjct: 494 INEEIDNMTTETKRVQEALKALEEVGDSD------HQLQELEERKTALENEE 539


>gi|121613691|ref|YP_001000262.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005217|ref|ZP_02270975.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87250285|gb|EAQ73243.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 458

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 40/122 (32%), Gaps = 2/122 (1%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L + I           +++   +     Q ++  + +    ++      + +   
Sbjct: 10  LERAILSSCIMSEEAYASIAGDISPKDFSLKAHQDIFKAVIACSNNKEPISVSFLRKH-- 67

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           ++   ++L ++        L +   E +   V++       L        R   EI  +I
Sbjct: 68  KKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQLLSFAHLLPTRINEDRAVSEIADEI 127

Query: 603 AQ 604
            +
Sbjct: 128 GK 129


>gi|327280650|ref|XP_003225065.1| PREDICTED: myosin-10-like [Anolis carolinensis]
          Length = 1999

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 85/282 (30%), Gaps = 11/282 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               R       + + ++ +       + + +           E  I  +      +    
Sbjct: 856  QVTRQDEVMQAKAVELQKVQEKHTKTQMDLKELENKYQQLSEEKTILAEQLQAETELFAE 915

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                   +  R Q+L        S      ++  + +  K   Q+ +Q    + +  +  
Sbjct: 916  AEEMRARLAARKQELEDILHELESRVEEEEERCQQLQGDKKKMQQHVQDLEEQLEEEEA- 974

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEEI- 537
              R+   L  +     + + +   L     ++     +KL     S+F        E++ 
Sbjct: 975  -ARQKLQLEKVSTEAKLKKMEEDLLVLEDQNSKLHKERKLMEERLSEFTSHMAEEEEKVK 1033

Query: 538  -HQRLC---ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
               +L    E    ++  +L ++ +              +     +Q   L ++   L +
Sbjct: 1034 SLSKLRNKYEAVMADMEDRLKKEEKGRQELEKLKRKLDGEAGDLQEQVAELQQQLEELRQ 1093

Query: 594  QKEEIEKQIAQVTAKGEAEKTA--ILISILHEVHIQIHQIES 633
                 E ++    A+ E E      ++  L E+  Q+ +++ 
Sbjct: 1094 ALARKEAELQAALARVEDEAAQKNAVLKSLRELQAQLAELQE 1135



 Score = 44.5 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 45/402 (11%), Positives = 126/402 (31%), Gaps = 17/402 (4%)

Query: 238  ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
            ++ +F +   L +     +     I    +  +  ++           +    V     +
Sbjct: 775  QSKIFFRAGVLAHLEEERDLKITDIIVSFQAAARGYLARKAFMKKQQQMSALKVMQRNCA 834

Query: 298  LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
                L  +Q   L+     ++     D+     A +   +   H                
Sbjct: 835  AYLKLRHWQWWRLFTKVKPLLQVTRQDEVMQAKAVELQKVQEKHTKTQ-----------M 883

Query: 358  DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
            D       Y + + EK I+      +     E E         + ELE  L    + +++
Sbjct: 884  DLKELENKYQQLSEEKTILAEQLQAETELFAEAEEMRARLAARKQELEDILHELESRVEE 943

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            ++ R    Q  + ++QQ  Q    +        +K    +       + M+  L+  +  
Sbjct: 944  EEERCQQLQGDKKKMQQHVQDLEEQLEEEEAARQKLQLEKVSTEAKLKKMEEDLLVLEDQ 1003

Query: 478  KKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLP 534
                 +E  L+   L    + + E+ +++  +    N+ + + + +       E+     
Sbjct: 1004 NSKLHKERKLMEERLSEFTSHMAEEEEKVKSLSKLRNKYEAVMADMEDRLKKEEKGRQEL 1063

Query: 535  EEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
            E++ ++L        E + +L +Q+ +     A  EA +       +   A         
Sbjct: 1064 EKLKRKLDGEAGDLQEQVAELQQQLEELRQALARKEAELQAALARVEDEAAQKNAVLKSL 1123

Query: 593  RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            R+ +    ++ +     +  +         ++  ++  ++++
Sbjct: 1124 RELQAQLAELQEDMESEKLARAKAEKQR-RDLGEELEALKTE 1164


>gi|301772228|ref|XP_002921527.1| PREDICTED: dynactin subunit 1-like isoform 2 [Ailuropoda
           melanoleuca]
          Length = 1268

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 227 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 286

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 287 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 346

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ +  
Sbjct: 347 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELNQA 406

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 407 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 466

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 467 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 526

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 527 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 582



 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 66/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 211 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 270

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 271 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 330

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 331 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 384

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+     S + E+  Q+      E M+E
Sbjct: 385 KNQELEVVRQQRERLQEELNQAESTIDELKEQVDAALGAEEMVE 428



 Score = 37.9 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 203 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 262

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 263 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 317


>gi|260174789|ref|ZP_05761201.1| replicative DNA helicase [Bacteroides sp. D2]
 gi|315923039|ref|ZP_07919279.1| replicative DNA helicase [Bacteroides sp. D2]
 gi|313696914|gb|EFS33749.1| replicative DNA helicase [Bacteroides sp. D2]
          Length = 456

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 55/173 (31%), Gaps = 12/173 (6%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  +L TL+N P  L E    L +  + ++  ++++  +     + K F    + + L  
Sbjct: 15  ERLVLGTLLNDPDKLVEVSSILDEACFYHDFHKQIFKIIKELDKKGKKFDFMVVKRELRG 74

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL------------L 591
           R   E    L  ++    +++   E   +      ++ +    +  L            +
Sbjct: 75  RMNEEKDTPLFFEIVGQRVYTNLYEHAAILKDASARRQIEDNLKNALSLIPCVTEDPFEI 134

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
             +       I      G       L      +   I+  ++      GF ++
Sbjct: 135 IEKVRNALDGIYSDQTSGVITLREALEGAYKIIQNNINDPDASSGTPTGFREL 187


>gi|218665737|ref|YP_002425518.1| hypothetical protein AFE_1046 [Acidithiobacillus ferrooxidans
          ATCC 23270]
 gi|218517950|gb|ACK78536.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans
          ATCC 23270]
          Length = 147

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGFYYCF-SC 67
          + + +    +      G + A CP HD++ PS       D K   +C+  C
Sbjct: 5  VDKVLSLLPKYRKFGPGKWMAICPAHDDRHPSLSIREAEDGKVLMHCWAGC 55


>gi|158338449|ref|YP_001519626.1| replicative DNA helicase [Acaryochloris marina MBIC11017]
 gi|158308690|gb|ABW30307.1| replicative DNA helicase [Acaryochloris marina MBIC11017]
          Length = 453

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 45/144 (31%), Gaps = 12/144 (8%)

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
               +L  +    E ++L  ++  P  +      L    +  +  Q+++    +   +  
Sbjct: 9   PASDRLPPQNVEAEESILGGILLDPEAIGRVADLLRPETFYLSAHQEIYRAALNLHGQGS 68

Query: 531 YFLPEEIHQRLCERGF-------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                 +   L +          G+L + +DR V    +           +R+   +   
Sbjct: 69  PTDLMCVTAWLQDHELLDKVGGQGKLAQLVDRTVSAINIDQYAALIKDKFLRRQLIKGAT 128

Query: 584 LYKRF-----RLLSRQKEEIEKQI 602
              +      + L    +E E+QI
Sbjct: 129 EVMQLAYDTSKTLETVLDEAEQQI 152


>gi|73974720|ref|XP_857253.1| PREDICTED: similar to plectin 1 isoform 1 isoform 6 [Canis
            familiaris]
          Length = 4691

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 62/211 (29%), Gaps = 23/211 (10%)

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
             E     R   + A  + ++     + +      +  ++ +  E  L    +        
Sbjct: 2286 AEQEAVRRAQAEQAALKQKQVADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ------- 2338

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              +        + ELQ+L + +     ++     E    R+      +L  +++ + R  
Sbjct: 2339 LEETDHQKSILDEELQRLKAEVTEAARQRNQVEEELFSVRVQMEELSKLKARIEAENRAL 2398

Query: 561  GLWSATT-------------EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQ 604
             L                  +      R       A   R      L++Q+   EK + +
Sbjct: 2399 ILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKE 2458

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                 +        + L +   ++ Q ++++
Sbjct: 2459 KMQAVQEATRLKAEAELLQQQKELAQEQARQ 2489



 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 19/274 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       +RE    +    +  AEL          +  + 
Sbjct: 1857 QELIRLRAETEQGEQQRQLLEEELARLQREAAAATHKRQELEAELAKVRAEMEVLLASKA 1916

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +   +          +     ++    ++L +    + +   +
Sbjct: 1917 RAEEESRSTSEKSKQRLEAEASRFRELAEEAARLRALAEETKRQRQLAEEDAARQRAEAE 1976

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------FLFSDFVEQKYFL 533
              L E   L  +     +  E    L +   +N  L++L            +   Q    
Sbjct: 1977 RVLAEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKAD 2034

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             EE   +L +    EL                  E  +   RQ  ++ LAL   F   + 
Sbjct: 2035 IEERLAQLRKASENEL-----------ERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 2083

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             K E+E ++ ++ +  E    +   + L     +
Sbjct: 2084 GKAELELELGRIRSNAEDTLRSKEQAELEATRQR 2117



 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 84/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+        +   +   +     + + +      Q  ++ L+++ +  + + 
Sbjct: 1351 RQLRYYRESADPLGTWLQDAKQRQERIQAVPLANSQAVREQLQQEKELLEEIERYGEKVD 1410

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E     + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1411 ECQQLAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1467

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1468 SEL---TTLTSQYIKFIRETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1524

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTA----- 615
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1525 QAKAQAEREAEELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKARQV 1584

Query: 616  --------ILISILHEVHIQIHQIESQEAMIEG 640
                     +   +  V +Q+   E Q    EG
Sbjct: 1585 EAAERSRVRIEEEIRVVRLQLEATERQRGGAEG 1617



 Score = 38.3 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1822 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLVAEQELIRLRAETEQGEQQRQLLEEELA 1881

Query: 604  QVTAKGEAE--KTAILISILHEVHIQIHQIESQEAMIE 639
            ++  +  A   K   L + L +V  ++  + + +A  E
Sbjct: 1882 RLQREAAAATHKRQELEAELAKVRAEMEVLLASKARAE 1919



 Score = 37.6 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 88/282 (31%), Gaps = 20/282 (7%)

Query: 373  KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
            ++ +E L  +    + E         D            +  + ++  R   +     RL
Sbjct: 2378 RVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARL 2437

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-----AAL 487
            +QL ++ + +         K      Q+    +     L + K   +   R+       +
Sbjct: 2438 RQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARQLQEDKEQM 2497

Query: 488  LLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCER 544
               L       Q   +     + + + E ++L   +      Q       +   ++  E 
Sbjct: 2498 AQQLAQETQGFQRTLEAERQRQLEMSAEAERLKLRVAEMSRAQARAEEDAQRFRKQAEEI 2557

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ--- 601
            G      +L  Q +   + +   +    D       A  L      L R+KE+++++   
Sbjct: 2558 GEKLHRTELATQEKVTLVHTLEIQRQQSD-----HDAERLRAAITELEREKEKLQEEATL 2612

Query: 602  IAQVTAKGEAEKTAILISILHEVHI----QIHQIESQEAMIE 639
            + Q + + +  +   L+     +      +  ++  +E  IE
Sbjct: 2613 LQQKSEEMQVVQQEQLLQETRALQESFLSEKDRLLQRERFIE 2654


>gi|260063087|ref|YP_003196167.1| endopeptidase Clp ATP-binding chain B [Robiginitalea biformata
           HTCC2501]
 gi|88784656|gb|EAR15826.1| endopeptidase Clp ATP-binding chain B [Robiginitalea biformata
           HTCC2501]
          Length = 866

 Score = 44.5 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 53/149 (35%), Gaps = 11/149 (7%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             L+ ++Q++     D      +   L   +             R+ +      ++  +R
Sbjct: 325 KALERRFQKVTVEEPDTEAAISILRGLKEKYETHHKV-------RVRDEAVIAAVELSER 377

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            + +  L     +       +   +  +  +    L R+  ++E +I  +  + + +K  
Sbjct: 378 YITNRFLPDKAIDLMDEAASKLRMEINSKPEELDALDRKIMQLEIEIEAIKRENDPDKLK 437

Query: 616 ILISILHEVHIQIHQI----ESQEAMIEG 640
            L + L     + ++I    ES+  +++G
Sbjct: 438 ALNAELANFKEERNEIFAKWESEREVVDG 466


>gi|297663628|ref|XP_002810266.1| PREDICTED: cingulin-like [Pongo abelii]
          Length = 1203

 Score = 44.5 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 77/209 (36%), Gaps = 11/209 (5%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLTL 491
           Q+ +         G    K    +D     + L +    K ++ ++  LRE  L  L   
Sbjct: 444 QVMELQNKLKQVQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALKGA 503

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           +    +     +     +    + ++L   +     +      E   ++        L +
Sbjct: 504 LKE-EVASRDQEVEHVRQQYQRDTEQLRRSMQDATQDHAVLEAE---RQKMSALVRGLQR 559

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALY----KRFRLLSRQKEEIEKQIAQVT- 606
           +L+    + G W +  + N  D+R   Q+ L L     +    L  + E +++++ Q   
Sbjct: 560 ELEETSEETGHWQSMFQKNKEDLRATKQELLQLRMEKEEMEEELGEKIEVLQRELEQARA 619

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQE 635
           + G+  +  +L   L +   ++ ++++++
Sbjct: 620 SAGDTRQVEVLKKELLQTQKELKELQAEQ 648



 Score = 38.3 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 78/225 (34%), Gaps = 22/225 (9%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + +  RLQ L Q+   +        ++     ++    +  +       +L      R 
Sbjct: 936  KELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEKVSRLETELDEEKNTVELLTDRVNRG 995

Query: 485  A----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDFVEQKY 531
                  L   L+   +  Q+   +   +   N +L+ +L S           S    Q  
Sbjct: 996  RDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQ 1055

Query: 532  FLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             L E +     E+       ++L+R+V++  +       ++ D +        L  R + 
Sbjct: 1056 LLQERLQAEEREKTVLQSTNRKLERKVKELSIQIEDERQHVNDQKDQ------LSLRVKA 1109

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTA-ILISILHE-VHIQIHQIES 633
            L RQ +E E++I ++    +  +        ++E +  +I  +E 
Sbjct: 1110 LKRQVDEAEEEIERLDGLRKKAQREVEEQHEVNEQLQARIKSLEK 1154


>gi|257090580|ref|ZP_05584941.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|312905110|ref|ZP_07764231.1| hypothetical protein HMPREF9512_02856 [Enterococcus faecalis
           TX0635]
 gi|256999392|gb|EEU85912.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|310631500|gb|EFQ14783.1| hypothetical protein HMPREF9512_02856 [Enterococcus faecalis
           TX0635]
          Length = 665

 Score = 44.5 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 43  CPFHDEKTPSFHCNDSK---GFYYCFS--CHVKGDHLSFLSALLGC-SFIESVQRLAAIA 96
           C FHD+  PS      K     ++C S  C V  D +  +  +L   S +E+   L    
Sbjct: 272 CLFHDDHNPSASIFTGKSGHSIFHCHSSNCGVSVDFIGVVMLILKKDSRVEAFNWLLE-- 329

Query: 97  GVPLPVVDPKIEKKEKIQTDLIRLIE 122
            + L     +  K+E     L   +E
Sbjct: 330 NLDLYPTHFRKLKEESK--VLFDTLE 353


>gi|224072314|ref|XP_002187083.1| PREDICTED: similar to rCG36147 [Taeniopygia guttata]
          Length = 566

 Score = 44.5 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 79/221 (35%), Gaps = 21/221 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP--SQRLMQSSLVKGKLSKKPSL 482
              ++ +++   +K   E +      KK  +    K    S+ + +    K  L +  +L
Sbjct: 197 KDKLQKQVEDFSRKLRAEKAAQAEQQKKAEQGLKAKEKEHSEAVARLEQDKDDLRRGAAL 256

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  L               +ELA  +    EL+   + L  +         + +     
Sbjct: 257 LEEKLWAL-----------KEELAAKQVAVQELELSKTTLLEEMRTTMVARSQVLELEEK 305

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSRQKEEI 598
            +        L++++    +     +  +  + +  +   A    L ++   L R++EE+
Sbjct: 306 VQVLTGQRNSLEQELSATSMQLEKEKVRVESMFRHEESLQAKQRSLLQQLDSLDREREEL 365

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +  + +     + ++ A  +    E   +  Q+++Q+ +++
Sbjct: 366 QASLGEAEQ--DKDRLAEQLEQSQEQSGK--QLQAQQELLD 402


>gi|197294350|ref|YP_001798891.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma
           australiense]
 gi|197294411|ref|YP_001798952.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma
           australiense]
 gi|171853677|emb|CAM11560.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma
           australiense]
 gi|171853738|emb|CAM11661.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma
           australiense]
          Length = 427

 Score = 44.5 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 46/147 (31%), Gaps = 17/147 (11%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E ALL  L+ +P  +      +    + N + + ++  +    ++ +      +   L 
Sbjct: 4   AERALLGALLLNPEKMDVVINLVNTNNFSNPKHRCIFETMKQLKLQNREIDYVTVGSVLD 63

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                     L +      L      +   +  + Y   +      R L    +++  ++
Sbjct: 64  NN--------LYKIGGIDYLIELVETSPASEYLETYIDLIKENALKRDLLGLIKQLPTEL 115

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIH 629
           +         K+  + + L  V  Q+ 
Sbjct: 116 S---------KSKNIHNYLQAVKTQVE 133


>gi|146318595|ref|YP_001198307.1| DNA primase (type) [Streptococcus suis 05ZYH33]
 gi|146320795|ref|YP_001200506.1| DNA primase (type) [Streptococcus suis 98HAH33]
 gi|253751719|ref|YP_003024860.1| DNA primase [Streptococcus suis SC84]
 gi|253755567|ref|YP_003028707.1| DNA primase [Streptococcus suis BM407]
 gi|145689401|gb|ABP89907.1| DNA primase (type) [Streptococcus suis 05ZYH33]
 gi|145691601|gb|ABP92106.1| DNA primase (type) [Streptococcus suis 98HAH33]
 gi|251816008|emb|CAZ51625.1| DNA primase [Streptococcus suis SC84]
 gi|251818031|emb|CAZ55820.1| DNA primase [Streptococcus suis BM407]
          Length = 358

 Score = 44.5 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          P HD    SF        +  FS  ++GD + F+  + G +F E+V  L
Sbjct: 34 PDHD----SFRIFADTNTFKWFSRDIQGDVIDFVQLVAGVTFKEAVSYL 78


>gi|330995354|ref|ZP_08319264.1| replicative DNA helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329575849|gb|EGG57373.1| replicative DNA helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 545

 Score = 44.5 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 71/232 (30%), Gaps = 21/232 (9%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           QA   R + +F +         R   +    R +       +      G +  +    E 
Sbjct: 9   QAFFRRERIIFARKTRLDMAETRKTGRRTSVRAKVN-----VPEEDAYGHVQPQALEFEE 63

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
           A+L  L+       +  + L    + ++  Q ++  + +  ++QK      + + L   G
Sbjct: 64  AVLGALMIEQDAYSQVSEILRPESFYDHRHQLIYEAIRTLNLQQKPVDILTVTEHLNSMG 123

Query: 546 -FGEL-----LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL------LSR 593
              E+     + QL  +V  +                          + +       +  
Sbjct: 124 KLEEVGGPFYITQLSGKVASSAHIEYHARIIAQKFLARELITFTSLVQTKAFDATVDVDD 183

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHE----VHIQIHQIESQEAMIEGF 641
             +E E ++ +++ +   +    +  ++ E    +     + +    +  GF
Sbjct: 184 LMQEAEGKLFEISQQNMKKDYTQINPVIREAYDMLQKAAARSDGLSGLSSGF 235


>gi|218438488|ref|YP_002376817.1| hypothetical protein PCC7424_1508 [Cyanothece sp. PCC 7424]
 gi|218171216|gb|ACK69949.1| WD-40 repeat protein [Cyanothece sp. PCC 7424]
          Length = 1373

 Score = 44.5 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 40/332 (12%), Positives = 92/332 (27%), Gaps = 19/332 (5%)

Query: 315 PRIVLCFDGDD-----PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
             I+   D D+       L    +  +                  +  +P   +R Y   
Sbjct: 308 REIIELTDLDNLNLGISELIKKIQEDEYYYKQHKMLLTKALKWQLQNYNPSLLLRGYNLQ 367

Query: 370 AFEKLIVESLPLVDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQA 427
            ++  +  +    D      + E    ++            +      D   +     Q 
Sbjct: 368 HYQSWMKIAKNHPDHPPIDLQVEFIGVSSNQPPDSSIEVFISYCPKDIDFARKINENLQE 427

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           +        +  + E  G    ++  A   +          +S    +           +
Sbjct: 428 LGKTTWFDQENIVVEKEGRQEIYQGIANSDNFVLIISPDSITSSDCAEEFNYAKQLNKRI 487

Query: 488 LLTLIN--HPAILQEQYQELADIRYDNNELQKL--WSFLFS--DFVEQKYFLPEEIHQRL 541
           +  L     P IL    +++A I ++ NE   L  ++ L               +  Q+ 
Sbjct: 488 IPILDQEIDPLILHPDLKKIAKINFNQNERDFLANFNELVRTIHLDRDHVHSHTKWLQKA 547

Query: 542 CERGFGE----LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            E    +    LL ++            + + +        Q+         +++ QK E
Sbjct: 548 REWELSQKNPDLLLRITEFSLAKNWLLESEQEDKKPPATALQKEYIQASESAIIAAQKAE 607

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            E+Q  +   + + E+T    + L E   +I 
Sbjct: 608 KERQ--EEIIRLQKERTQEAEARLIEQKKRIK 637


>gi|123448346|ref|XP_001312904.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121894768|gb|EAX99974.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 3748

 Score = 44.5 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 30/314 (9%), Positives = 107/314 (34%), Gaps = 6/314 (1%)

Query: 323  GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382
             D    +   +   +V       N    + L    D         +   E +        
Sbjct: 1859 NDLENQKNVLENETIVKAEKKMQNDNTIMDLRNKIDTLKAQLQQQEKPQEDIEKLKKEYQ 1918

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            ++ ++ + +          +E E+H    +    ++  +     +++ ++  +  +   +
Sbjct: 1919 ELKFQFDAKVSQNKEEVSHSENELHSLKEMYDKIEKVEQQQ-VDSLKSQILSVKAQIDDQ 1977

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
            +       K+  +   +K  +Q  ++ +  K    +   L E  +    +      ++  
Sbjct: 1978 NKKNEEMKKQIEKLTSEKSDAQNELEKAENKVDPDELVRLSE-EIEELKLEADEKKKQNE 2036

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK--QLDRQVRDA 560
            +  + +  + ++ +++   L SD     +   ++I  R+ E+         +L   + + 
Sbjct: 2037 EVRSSLEEELSKYKEILENLKSDNQSDIHNQIDQIKDRINEKQQENEADNQKLQEIINNH 2096

Query: 561  GLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
                        ++++  +Q +    K      ++  E+++++ Q   + E +K   L  
Sbjct: 2097 KKLLENMNKEHEEIQKQIEQEVDKNNKEIDQKQKEINEVKEKLQQAKKENEDDKV-ELQR 2155

Query: 620  ILHEVHIQIHQIES 633
             +     +I ++++
Sbjct: 2156 QIDNCGREIEKLQN 2169



 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/284 (9%), Positives = 94/284 (33%), Gaps = 25/284 (8%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           D    +        + L  +   +      ++ E ++    DE  ++   +      + +
Sbjct: 683 DDAKILYNDMVDKIDDLKQQRSKVEQKY--KDLEKQNKEKSDEIEKVSKEISELKEKLDN 740

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                  +  +  ++  + ++ + +     +  ++  +  ++    +  M+   V     
Sbjct: 741 LNQFKDNTPELHQKVDAMNEQIVKKSQENEKIQEEMNKLNEELQHLENEMEEIEVVNDER 800

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           +    +              +    Q++ + +  N E+Q + + L     + +  L +  
Sbjct: 801 ETIQEK--------------IDNIKQQIEEKKKSNEEIQDIMNLLIEAENDAQKELDDIE 846

Query: 538 HQRLCERGFGELLKQLD-------RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                     + ++ L        +   +    +   +  + D++    Q   +      
Sbjct: 847 IVEAQSEEIRQRIQTLQDNLQDRKKLNNELTEQNNKLQKELKDLQNELDQTELVNDDSES 906

Query: 591 LSRQKEEIEKQIAQ--VTAKGEAEKTAILISILHEVHIQIHQIE 632
           L+++ +EI++QI +     +   E+   LI  + +   ++ +IE
Sbjct: 907 LNKKLDEIKEQINERKSQNENNTEQNEKLIEEIEKFAKELDEIE 950



 Score = 37.9 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 98/260 (37%), Gaps = 33/260 (12%)

Query: 406  IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              L+  I ++K+ K R      + +      Q+ + E +     +++     D     Q 
Sbjct: 2364 DKLREQIENLKNVKSRDVEIIDLGEEEDGERQQLVEELNKLKEEYEQLQNTDDINDLKQE 2423

Query: 466  LM--QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
            ++     + + K S K +  ++ LL  L    + ++   QE  D     + ++++ S L 
Sbjct: 2424 VIDLSKQIDEIKASNKDAQTKSDLLKELSQLNSQIENIIQEEEDKEEIRSHIEEIKSLLD 2483

Query: 524  SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
            +   E+     +++ ++L ++    L+ +L   ++     +   + NI D+ Q +     
Sbjct: 2484 NKQSEEDEKELDDLKKQLEDK--QSLINKLKEDIKLTKEENEKAQKNIDDLEQEFDDLNN 2541

Query: 584  LYKRFRLLSRQKEEIEKQIA-----------------------------QVTAKGEAEKT 614
             Y+       +++ +E +I                              ++ +  +  + 
Sbjct: 2542 EYEEESQFDEERKLLETEIERLKQLISEKKTQNKEKTDKLFKEINDLTEELNSLEDDSEN 2601

Query: 615  AILISILHEVHIQIHQIESQ 634
              L S + E++ QI+ ++ +
Sbjct: 2602 KELQSQIDELNEQINSVKEE 2621



 Score = 37.2 bits (84), Expect = 9.0,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 91/277 (32%), Gaps = 5/277 (1%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            ++   +   E+         ++    ++            +   ++K  ++ ++++  + 
Sbjct: 1438 LKNQLEEIAEEKDDSEEIKAEIENLHKSIEEKKEHNANTQQNNENMKEELSKLQEEFDQI 1497

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
               +   + +    +K  ++          N   ++        + +   +         
Sbjct: 1498 EVVEDKAEEIHSEIEKLKSQIE---EKNTTNNDIKEANDILNEELNNLQKQYDEIDVEED 1554

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            +   L   + +   +L+E+  +   I+  N  + K    L ++    +            
Sbjct: 1555 KSEELSQKVTDLQKLLEEKKSQNETIKSGNENILKELQSLQNELDNIEVVSSSSEEGEKK 1614

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                 +++    +Q  +    +   +  I D+     + + +  +   L +Q EEI+ +I
Sbjct: 1615 IEKLKQMISDKQKQNEETTKHNEELDNQIKDLENELNEIIPVKDKSNDLQQQIEEIKDKI 1674

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                 K   E+ + L + L E + Q+       A+IE
Sbjct: 1675 TDKQKKN--EECSQLNTALKEEYDQLKSEFDNIAVIE 1709


>gi|254672026|emb|CBA04568.1| Replicative DNA helicase [Neisseria meningitidis alpha275]
 gi|261392762|emb|CAX50338.1| replicative DNA helicase [Neisseria meningitidis 8013]
 gi|308389057|gb|ADO31377.1| putative replicative DNA helicase [Neisseria meningitidis alpha710]
 gi|325130042|gb|EGC52833.1| replicative DNA helicase [Neisseria meningitidis OX99.30304]
 gi|325133976|gb|EGC56631.1| replicative DNA helicase [Neisseria meningitidis M13399]
 gi|325136793|gb|EGC59391.1| replicative DNA helicase [Neisseria meningitidis M0579]
 gi|325206280|gb|ADZ01733.1| replicative DNA helicase [Neisseria meningitidis M04-240196]
          Length = 468

 Score = 44.5 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 14/168 (8%)

Query: 475 KLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            L       E ++L   ++ +PA        ++   +  +E + ++  +     E +   
Sbjct: 18  SLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIAKLINESRPAD 76

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L         ++L+       L +           + Y + +    R R + R
Sbjct: 77  VITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV----RERSIMR 126

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           Q  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 127 QLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 172


>gi|196228750|ref|ZP_03127616.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
 gi|196227031|gb|EDY21535.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
          Length = 755

 Score = 44.5 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           L QL+ +       +        +  +  ++ LA+  R + L++++++I +++ ++    
Sbjct: 202 LDQLEMKDEKKRYETNKEAKPQEN--EQQREQLAILNRLKELAQRQQDINERLKELQTAL 259

Query: 610 EAEKTAILISILHEVHIQIHQIESQE 635
           +A KT        E+  Q+ +++ +E
Sbjct: 260 QAAKTEE---QKEEIRRQLKRLQEEE 282


>gi|146218435|gb|AAI39881.1| Si:dkey-204a24.2 protein [Danio rerio]
          Length = 1165

 Score = 44.5 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 95/275 (34%), Gaps = 28/275 (10%)

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH----IKDQKLRYY 423
              F  +    + + D   K E E         + +L+   +    +    ++ +  R  
Sbjct: 400 HERFCGVKAPQISVTDSNMKTELEQAFGRNTQLQQQLDKSRRELQENQDQMVELRMDREG 459

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               +R +  QL Q             + ++   D       L +S L++ KL      R
Sbjct: 460 AESRLRQQEDQLAQLQEELRRTLENSPQSDSMQLDLLTVQAELSESQLLRQKLEDTLRQR 519

Query: 484 EAAL--LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           E  L  L   +              ++   + E++ L         EQ     + +   +
Sbjct: 520 ERELTALKGALKD------------EVASHDKEMEALR--------EQFSQDMDALRHSM 559

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEAN-IVDVRQGYQQALALYKRFRLLSRQ-KEEIE 599
                 +L  + +RQ  +A + +   E     +  + +++  +   +  L ++Q K E+E
Sbjct: 560 ETVSQSQLEIEEERQKVNASILAMEEELEGYKEQSEQWKKQFSSANQELLKAQQGKRELE 619

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +++  V  + +   +  ++  L +    + + +S+
Sbjct: 620 EKLLAVVKQTDETDSNSVMKELQQCRDSLKKAQSE 654



 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 92/287 (32%), Gaps = 13/287 (4%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +          I + +  +    ++  +       + R      L++     KD+ +   
Sbjct: 808  QKRLLDRSLDKINKEMESMMGDSRQSVQVLQSQLEEFRDRSRRELQDAQRLSKDRLVELQ 867

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             +QA+    Q+   +   E              ++      + M++ L   + S+    R
Sbjct: 868  RAQALLKTTQEEVSRVKKELLSCTEERDSAQLDKELLSSRLKNMETELQTDRSSQTDRSR 927

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNEL-------QKLWSFLFSDFVEQKYFLPEE 536
            E  LL   +    I  E  +E +     N  +        +L S L  +   +     ++
Sbjct: 928  EIRLLEDKVKTLEI--ELDEEKSGAELLNERITRCREQVDQLRSELMQERSARHDLEMDK 985

Query: 537  IHQRLCERGFGELLKQLDRQVRDAG---LWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                   +     +  +  Q R +    +     +     +R   ++   +    R L R
Sbjct: 986  SALERQIKELKSRIADMGTQSRPSAGVTMLENKVQELEDRLRSEEREKNTIQAAQRRLDR 1045

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            + +++   + Q   +  AE+   L   +  +  Q+ + E +   +EG
Sbjct: 1046 KLKDVTATLDQERNQH-AEQRDQLSLRVKALKRQLDESEGEVERLEG 1091


>gi|89052971|ref|YP_508422.1| hypothetical protein Jann_0480 [Jannaschia sp. CCS1]
 gi|88862520|gb|ABD53397.1| hypothetical protein Jann_0480 [Jannaschia sp. CCS1]
          Length = 850

 Score = 44.5 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 65/180 (36%), Gaps = 23/180 (12%)

Query: 477 SKKPSLREAALLLTLINHPA-------------ILQEQYQELADIRYDNNE--LQKLWSF 521
           +++ + R A LL  L + P               +Q     +  I ++  E   + LW+ 
Sbjct: 430 NRENATRSARLLRALTHRPEDGLEEGVYLGLRSAIQRLEAAIDMISFETQEDVAEILWNA 489

Query: 522 LFSDFVEQKYFLPEEIH---QRLCER----GFGELLKQLDRQVRDAGLWSATTEANIVDV 574
                        E +    +RL E        E + QL +++R+A        A+  + 
Sbjct: 490 ALELEFGDLDSALERLRRAQERLEEAMRQGASDEEIAQLMQEMREAMDEYMQELADNTEF 549

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                Q     +R  + +   +E+ ++I ++  +G   +   ++  L E+   +   + +
Sbjct: 550 GDDTDQP-DEGERQEMSNADLDEMLRRIEELMQEGRMAEAMEMLQALQEMLENMEITQGE 608


>gi|73958821|ref|XP_862604.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 16 [Canis familiaris]
          Length = 2016

 Score = 44.5 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 921  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 980

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 981  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1040

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1041 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1100

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1101 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1157

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1158 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1198


>gi|322375350|ref|ZP_08049863.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. C300]
 gi|321279613|gb|EFX56653.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. C300]
          Length = 1179

 Score = 44.5 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 78/239 (32%), Gaps = 30/239 (12%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           + L     + +    +  +Q    +         +  ++ + +    +  ++++ +   +
Sbjct: 744 ETLWKLQEEELNRLTEGDWQADKEKCQERLATIAREKQNLEAEIEEIKSNKNAIQERYQN 803

Query: 478 KKPSLREAALLLTLINHPAI-----LQEQYQELADIRYDNNELQKLWSF----------- 521
            +  + +A LL + +          ++   +EL ++ ++  E+Q+L+             
Sbjct: 804 LQEQVAQARLLKSELQGQKRYEVTDIERLGKELDNLNFEQEEIQRLFQEKVDNLEKVDTD 863

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L S   E+       + Q L  + F     +LD         S+  +       +  ++ 
Sbjct: 864 LLSQQAEEAKTQKTNLQQGLIRKQF-----ELDDIEGQLDDISSHLDQARQQNEEWIRKQ 918

Query: 582 LALYKRFRLLSRQKEEIEKQIAQ---------VTAKGEAEKTAILISILHEVHIQIHQI 631
                +   LS +   ++ Q+           +    E E   +    + E+   I  +
Sbjct: 919 TRAEAKKEKLSERLRYLQAQLTDQYQISYTEALEKAHELENLNLAEQEVKELEKAIRSL 977


>gi|304387795|ref|ZP_07369971.1| replicative DNA helicase DnaB [Neisseria meningitidis ATCC 13091]
 gi|304338177|gb|EFM04311.1| replicative DNA helicase DnaB [Neisseria meningitidis ATCC 13091]
 gi|325198087|gb|ADY93543.1| replicative DNA helicase [Neisseria meningitidis G2136]
 gi|325203959|gb|ADY99412.1| replicative DNA helicase [Neisseria meningitidis M01-240355]
          Length = 468

 Score = 44.5 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 14/178 (7%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                 +    L       E ++L   ++ +PA        ++   +  +E + ++  + 
Sbjct: 8   PSEDREIGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIA 66

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               E +      + + L         ++L+       L +           + Y + + 
Sbjct: 67  KLINESRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV- 119

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
              R R + RQ  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 120 ---RERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 172


>gi|281348092|gb|EFB23676.1| hypothetical protein PANDA_015360 [Ailuropoda melanoleuca]
          Length = 1754

 Score = 44.5 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 49/107 (45%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QVR++       E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKTLKEEIEKLRKQVRESSHLEQQLEEANSVRRELDDAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           E+ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 ELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|254804750|ref|YP_003082971.1| Replicative DNA helicase [Neisseria meningitidis alpha14]
 gi|254668292|emb|CBA05217.1| Replicative DNA helicase [Neisseria meningitidis alpha14]
          Length = 468

 Score = 44.5 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520
            +       +    L       E ++L   ++ +PA        ++   +  +E + ++ 
Sbjct: 5   AAMPSEDREIGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +     E +      + + L         ++L+       L +           + Y +
Sbjct: 64  SIAKLINESRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    R R + RQ  E+  +IA+     +      L+        QI   ES     +G
Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQG 171

Query: 641 F 641
           F
Sbjct: 172 F 172


>gi|332801082|ref|NP_001193928.1| citron Rho-interacting kinase isoform 1 [Homo sapiens]
 gi|56405460|gb|AAV87216.1| citron [Homo sapiens]
          Length = 2069

 Score = 44.5 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 36/299 (12%), Positives = 95/299 (31%), Gaps = 40/299 (13%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
             +   +   EKL         +  K        ++ + + +    ++   N +KD    
Sbjct: 664 QAKERAERELEKLQNREDSSEGIRKKLVEAEERRHSLENKVKRLETMERRENRLKDDIQT 723

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+               +         +++ + + K       
Sbjct: 724 KSQQIQQMADKILELEEKHREAQVSAQHLEVHLKQKEQHYEEKIKVLDNQIKK------- 776

Query: 481 SLREAALLLTLIN-HPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            L +   L  ++  H     E+ + L++    I   +++++ L   +       K     
Sbjct: 777 DLADKETLENMMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANS 836

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALAL 584
            +  +   +   E++ +L +Q       +   EA    + +  +           + L L
Sbjct: 837 SLFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKNRLLEL 896

Query: 585 YKRFRL-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             R R            L RQ  E++  + +  +     +   L +    +  Q+ Q +
Sbjct: 897 ETRLREVSLEHEEQKLELKRQLTELQLSLQERES-----QLTALQAARAALESQLRQAK 950


>gi|197294322|ref|YP_001798863.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma
           australiense]
 gi|197294824|ref|YP_001799365.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma
           australiense]
 gi|171853649|emb|CAM11528.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma
           australiense]
 gi|171854151|emb|CAM12143.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma
           australiense]
          Length = 427

 Score = 44.5 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 46/147 (31%), Gaps = 17/147 (11%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E ALL  L+ +P  +      +    + N + + ++  +    ++ +      +   L 
Sbjct: 4   AERALLGALLLNPEKMDVVINLVNTNNFSNPKHRCIFETMKQLKLQNREIDYVTVGSVLD 63

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                     L +      L      +   +  + Y   +      R L    +++  ++
Sbjct: 64  NN--------LYKIGGIDYLIELVETSPASEYLETYIDLIKENALKRDLLGLIKQLPTEL 115

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIH 629
           +         K+  + + L  V  Q+ 
Sbjct: 116 S---------KSKNIHNYLQAVKTQVE 133


>gi|322376487|ref|ZP_08050980.1| DNA primase [Streptococcus sp. M334]
 gi|321282294|gb|EFX59301.1| DNA primase [Streptococcus sp. M334]
          Length = 112

 Score = 44.5 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 41/124 (33%), Gaps = 18/124 (14%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            D  +D  E Q L+  L                  L      E  ++++R          
Sbjct: 7   EDFAFDTPEFQVLYDLLGQYGN-------------LPPEVLAEQKEEVERAWYQVLAQDL 53

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
             E +  ++ +     + + +   LL++    I+K++ + +  G+ +     +  L    
Sbjct: 54  PAEMSPQELSE-----VEMTRNKALLNQDNMRIKKKVQEASHVGDTDTALEELERLISQK 108

Query: 626 IQIH 629
            ++ 
Sbjct: 109 RRME 112


>gi|301772230|ref|XP_002921528.1| PREDICTED: dynactin subunit 1-like isoform 3 [Ailuropoda
           melanoleuca]
          Length = 1256

 Score = 44.5 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ +  
Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELNQA 399

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575



 Score = 40.6 bits (93), Expect = 0.73,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 66/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+     S + E+  Q+      E M+E
Sbjct: 378 KNQELEVVRQQRERLQEELNQAESTIDELKEQVDAALGAEEMVE 421



 Score = 37.6 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310


>gi|313889309|ref|ZP_07822960.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN
          20026]
 gi|157419744|gb|ABV55433.1| putative zinc finger protein [Streptococcus dysgalactiae subsp.
          equisimilis]
 gi|313122357|gb|EFR45445.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN
          20026]
          Length = 358

 Score = 44.5 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          P HD    SF        +  FS  ++GD + F+  + G +F E+V  L
Sbjct: 34 PDHD----SFRIFADTNTFKWFSRDIQGDVIDFVQLVAGVTFKEAVSYL 78


>gi|30846|emb|CAA32479.1| unnamed protein product [Homo sapiens]
          Length = 3685

 Score = 44.5 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 2529 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 2584

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 2585 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 2644

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2645 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 2703

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 2704 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 2763

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2764 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 2823

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2824 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 2882

Query: 550  -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 2883 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 2942

Query: 609  GEA 611
             + 
Sbjct: 2943 TDE 2945



 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L +  +K   +     +  K        K  S R   ++L+         L E  +   
Sbjct: 1701 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANHGDHCRKLVEPQISEL 1760

Query: 491  -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                  I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 1761 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 1820

Query: 546  ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                 ELL++ D   +       + E  I                        +   Q  
Sbjct: 1821 EGTVKELLQRGDNLQQRITDERKSEEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 1880

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1881 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 1932


>gi|311250035|ref|XP_003123925.1| PREDICTED: centrosomal protein of 120 kDa-like [Sus scrofa]
          Length = 986

 Score = 44.5 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 31/280 (11%), Positives = 90/280 (32%), Gaps = 13/280 (4%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 645 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 702

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++            ++    + ++  + + +Q S+ + K   
Sbjct: 703 AEYTILEGKLQKTLIDLEKREQQLTIAESELQRERKELKSERERNLQELQDSIRRAKEDC 762

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   +  L      LQ+Q  +  +      + + L         +Q       +
Sbjct: 763 VHQVELERLKIRQLEEDKHRLQQQLNDAEN------KYKILEKEFHQFKDQQSNKPEIRL 816

Query: 538 HQRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
              +        EL ++L+   +    +       + ++ +  Q+      +   L +Q+
Sbjct: 817 QSEINLLTLEKVELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQ 874

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           EE+E+   +  A  E +        L ++  +++++  QE
Sbjct: 875 EELEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 914


>gi|302663572|ref|XP_003023427.1| hypothetical protein TRV_02437 [Trichophyton verrucosum HKI 0517]
 gi|291187423|gb|EFE42809.1| hypothetical protein TRV_02437 [Trichophyton verrucosum HKI 0517]
          Length = 1628

 Score = 44.5 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 29/269 (10%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
             + +R               L   +K  +   +         + I+    +  Q      
Sbjct: 894  RIIQRNFHLYLNLKSSPWWRLFATMKPLLGETRTAGEVKKRDEKIQQLEAKAQQDIAERQ 953

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAILQE 500
                   K     +  +   +     +L K ++ K+  LRE  L   L   I     L++
Sbjct: 954  RIEDERRKIETEMQRIRKTLESERSLALDKEEIFKRLQLREVELSEKLAGAIADQESLED 1013

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVR 558
            Q  EL   +      +K+   L  D    +     +I +RL   ++   E +  +++Q++
Sbjct: 1014 QLDELIAAK------KKIEHEL--DLRRGQLEQAAQIMERLEGEKKELQERISDMEKQLK 1065

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA--- 615
                     +  I  + Q       L     +  ++ +++E ++     + + E      
Sbjct: 1066 SVESTHGEYDEKIGALNQEIN---TLNSHLAMKDKKLQDLEAKLLSSDQQLDLELANTTK 1122

Query: 616  ----------ILISILHEVHIQIHQIESQ 634
                       L+    E+  QI  + S 
Sbjct: 1123 ELEGSKKQIKQLLEENREIQRQIADLSST 1151


>gi|5032287|ref|NP_004000.1| dystrophin Dp427p1 isoform [Homo sapiens]
          Length = 3681

 Score = 44.5 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 2525 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 2580

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 2581 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 2640

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2641 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 2699

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 2700 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 2759

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2760 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 2819

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2820 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 2878

Query: 550  -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 2879 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 2938

Query: 609  GEA 611
             + 
Sbjct: 2939 TDE 2941



 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L +  +K   +     +  K        K  S R   ++L+  +      L E  +   
Sbjct: 1697 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 1756

Query: 491  -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                  I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 1757 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 1816

Query: 546  ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                 ELL++ D   +         E  I                        +   Q  
Sbjct: 1817 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 1876

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1877 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 1928


>gi|123414924|ref|XP_001304583.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121886046|gb|EAX91653.1| hypothetical protein TVAG_323680 [Trichomonas vaginalis G3]
          Length = 813

 Score = 44.5 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 74/224 (33%), Gaps = 3/224 (1%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
           +   + +D + R+   + +   +     +   E S      +        +    +L  +
Sbjct: 91  DLNAYTRDPQFRHTVERKLVAEIDNRIAQVKEEISRIEEKKQTKTPKLKVRDNRPQLTYT 150

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           ++   ++ K     +  +   ++N                 +  + + L   L    +++
Sbjct: 151 AIENARMQKAEEQNKREVEQLILNALISKYHAQDARKRQEQEEQKQRDLQESLRRKQIKE 210

Query: 530 KYFLPEEIHQ---RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           +    + I +   +L E+   +  ++L  +        A  +A I   ++  ++  A  K
Sbjct: 211 REDQLKRIKEAEKQLEEQRKADHQRRLQEEEEQKKAREAAKQAEIDRRKKQLEEEEAARK 270

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           R   +  Q ++ E+   Q   + +          L ++  +  +
Sbjct: 271 RQEEIRAQIKKQEEMKIQQAKEIQERLDKQEQRRLQKLQEEQEE 314


>gi|116007118|ref|NP_001036254.1| CG13366, isoform B [Drosophila melanogaster]
 gi|113193579|gb|ABI30962.1| CG13366, isoform B [Drosophila melanogaster]
          Length = 1094

 Score = 44.5 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 31/249 (12%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            E   ++T +E       L +    + D +      + + +    LFQ          R 
Sbjct: 398 MEETHYSTNEELQATLQELADLQTQLTDTQTEN---ERLAEEKDVLFQSLC-------RQ 447

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
            +K    R Q    Q L+     +       S RE  LL        +++   +E   + 
Sbjct: 448 TEKLNESRTQISTLQELLLRDTKQPAPEVSASEREQKLL-------DLIKTSQEEREAVL 500

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               EL    + +                 +L  +   E +  LD Q+  A       EA
Sbjct: 501 LKQEELGAELAEMKQAREAG----------QLELQRQRERIALLDSQLDAANAERRQGEA 550

Query: 570 NIVDVRQGYQQALALYKRFRLLSR----QKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
                 +   Q      R   L      + EE+E  +++      +E   +       + 
Sbjct: 551 QFSQAMEEISQRAIEISRLSTLLENARSKIEELEADLSRGDKTDLSEVLDVARKEKDALE 610

Query: 626 IQIHQIESQ 634
            ++ +++ Q
Sbjct: 611 ERVAELQDQ 619


>gi|416720|sp|P32985|BPS2_ACIAM RecName: Full=Protein bps2
 gi|40782|emb|CAA45528.1| bps2 [Acidianus ambivalens]
          Length = 582

 Score = 44.5 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 76/219 (34%), Gaps = 10/219 (4%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           D L         E    GR + +  + R +    +           L       E  LL 
Sbjct: 53  DLLNVFANSGYVELDLDGRTYYRRIK-RVKNKIMESSKLLLDDDRALLLSYFSPENKLLN 111

Query: 490 TLI---NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            ++    +         ++ +++    E++     L ++  +      E I  +   +  
Sbjct: 112 QIMSGEENVEWFISATSKINELKSKKEEMETKLHNLQAEIDDLNRKHKEAIELQTKIKQI 171

Query: 547 GELLKQLDRQVRDAGLWSATTE---ANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQI 602
            + + +L+++     + + TT+       +  +  ++ + + KR    L  +   ++++I
Sbjct: 172 EDEIARLEKEKESDKVLNKTTQTISITNENKLRDIKEKIEVKKRELEDLQNRIARLDQEI 231

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQI--ESQEAMIE 639
               +    E        L E++ Q+ +I  +  EA IE
Sbjct: 232 KNKESLASPEIRQSYERQLQEINAQLQKITAQRNEAEIE 270



 Score = 37.6 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 80/219 (36%), Gaps = 10/219 (4%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              ++ + +++  K     +      +K+    + +   +++        K  +   +  
Sbjct: 130 INELKSKKEEMETKLHNLQAEIDDLNRKHKEAIELQTKIKQIEDEIARLEKEKESDKVLN 189

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                  I +   L++  +++   + +  +LQ   + L  +   ++     EI Q    +
Sbjct: 190 KTTQTISITNENKLRDIKEKIEVKKRELEDLQNRIARLDQEIKNKESLASPEIRQSYERQ 249

Query: 545 --GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA------LYKRFRLLSRQKE 596
                  L+++  Q  +A +     E  +  +R+  +Q L        +    +   + +
Sbjct: 250 LQEINAQLQKITAQRNEAEIEIRLLEKVLDQIRESEKQHLTTCYVCGSHVDPSIWKVRID 309

Query: 597 EIEKQIAQVTA--KGEAEKTAILISILHEVHIQIHQIES 633
            I K++ +  +   G  ++   L+S   E+  ++ +++ 
Sbjct: 310 VISKELQEKNSLYAGIKKEADELLSKKSEIEKKLKELDQ 348


>gi|297301841|ref|XP_002805863.1| PREDICTED: structural maintenance of chromosomes protein 3-like
           [Macaca mulatta]
          Length = 1204

 Score = 44.5 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 40/363 (11%), Positives = 100/363 (27%), Gaps = 24/363 (6%)

Query: 283 VLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342
           V +L Q     V+ +L       ++  L K     +   + +   L    K   +     
Sbjct: 152 VTTLHQRNNATVLKNLIQEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALE 211

Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
                          D  S  R        +L        D +   E + R   T     
Sbjct: 212 YTIYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAM 271

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
           + E             + +    Q  +  L+    +     +   R      R +  +  
Sbjct: 272 KEEKEQL-------SAERQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKI 324

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK--LWS 520
            ++  + +  + K +      E  +               ++    ++ + E +   +  
Sbjct: 325 EEKQKELAETEPKFNSVKEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKK 384

Query: 521 FL--FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
            L      +  K      IH+ L +               +             D+ +  
Sbjct: 385 ELKSLDQAINDKKRQIAAIHKDLEDTE------------ANKEKNLEQYNKLDQDLNEVK 432

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAM 637
            +   L +++  +  +K+E++ +   +  +  AE +         E   Q+ +  + +A+
Sbjct: 433 ARVEELDRKYYEVKNKKDELQSERNYLWREENAEQQALAAKREDLEKKQQLLRAATGKAI 492

Query: 638 IEG 640
           + G
Sbjct: 493 LNG 495


>gi|215414875|emb|CAA21686.2| C. elegans protein Y54E2A.4, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 2017

 Score = 44.5 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 58/155 (37%), Gaps = 6/155 (3%)

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            LI  P   +   Q L  +         L   L      + + L  +I ++  +  F   
Sbjct: 77  LLIYFPDTFETISQNLLQMLCSTRSDMDLQGELIDLLGVELFELAGDILEKRNKIVFEVK 136

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            ++L +   +    +    A    ++    Q+ +  ++ R L ++++   +++ +V    
Sbjct: 137 SQELAK--VEHARQAKAKPAVPGFLQTVSVQSTSQNEKRRELRKEEKRTRRELNRVIHAF 194

Query: 610 EAEKTAILISILHEVHIQ----IHQIESQEAMIEG 640
             E+   L     E+  Q    I Q++ + +++ G
Sbjct: 195 GDEEKLELELAQKEIQRQRQLEIDQMKWKPSLVAG 229


>gi|325971039|ref|YP_004247230.1| replicative DNA helicase [Spirochaeta sp. Buddy]
 gi|324026277|gb|ADY13036.1| replicative DNA helicase [Spirochaeta sp. Buddy]
          Length = 461

 Score = 44.5 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 49/147 (33%), Gaps = 6/147 (4%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
            S+ + G++  +    E A+L  ++ +  +L E    L    +     Q+L+  + +   
Sbjct: 2   ASNSMLGRVPPQNEEAERAVLGAILLNEKVLVEVTDFLGKDDFYKVAHQQLFGAIVAFRQ 61

Query: 528 EQKY-FLPEEIHQRLCERGFGELLKQLDRQVR-DAGLWSATTEANIVDVRQGYQQALALY 585
           E         +   L  +   E    L       + + + T  A    + +   Q   L 
Sbjct: 62  ESSETLDLITLSSYLKRKSLVEQCGGLSYISTLTSDVPTTTNAAYYAKILKALSQRRKLL 121

Query: 586 KRFRLLS----RQKEEIEKQIAQVTAK 608
                L      + ++I+K I +    
Sbjct: 122 LFASKLKDNAFDESQDIQKVIDEGEQS 148


>gi|256840120|ref|ZP_05545629.1| ATP-dependent chaperone ClpB [Parabacteroides sp. D13]
 gi|256739050|gb|EEU52375.1| ATP-dependent chaperone ClpB [Parabacteroides sp. D13]
          Length = 862

 Score = 44.5 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 21/213 (9%), Positives = 71/213 (33%), Gaps = 12/213 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++        +  +  +++    K +   K  +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQTVIVDEPSELDTISILRGLKEKYENHHKVRIKDDAIISAVQLST 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S                +          +   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAARLRLQIDSVPESLDEVSRRIKQLEIEREAIKRENDKSKL 436

Query: 556 QVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           ++ +  +     E      + Q  ++ +   ++ ++     E ++ +  +   +G+  K 
Sbjct: 437 ELLNKEIADLKEEETKQKAQWQSEKEQINKIQQNKI---DIENLKFEADKAEREGDYGKV 493

Query: 615 AILI--------SILHEVHIQIHQIESQEAMIE 639
           A +           + EV  ++  ++   AMI+
Sbjct: 494 AEIRYGKIKQKEEEIREVQAKLKTMQGAAAMIK 526


>gi|221632469|ref|YP_002521690.1| chaperone clpB 1 [Thermomicrobium roseum DSM 5159]
 gi|221157168|gb|ACM06295.1| chaperone clpB 1 [Thermomicrobium roseum DSM 5159]
          Length = 870

 Score = 44.5 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 45/368 (12%), Positives = 107/368 (29%), Gaps = 5/368 (1%)

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
            AL+ ++ + R       S++  L     D+ +L + G  + V      +      LL +
Sbjct: 139 EALSQIRGAQRVTSPNPESTYQALERYGRDLTALARQGKLDPVIGRDDEIRRVIQVLLRR 198

Query: 313 LSPRIVLCFD-GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371
                VL  + G          A  +V   +  G R   ++     D  + +        
Sbjct: 199 TKNNPVLIGEPGVGKTAIVEGLAQRIVRGDVPEGLRDKRIVQ---LDLAAMLAGAKYRGE 255

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
            +  ++++       + E                        ++    L      AI   
Sbjct: 256 FEERLKAVLDEIRASEGEIIVFIDEVHTVVGAGAAEGAMDAANMLKPMLARGELHAIGAT 315

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
               ++K+I +     R ++           +  +++    + +L  K  + ++AL+   
Sbjct: 316 TLDEYRKHIEKDPALERRFQPVFVDEPSVEDTISILRGLRERYELHHKVRILDSALVAAA 375

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           +     +  ++     I   +    +L   + S   E            +      +   
Sbjct: 376 VLSHRYITNRFLPDKAIDLVDEAAARLRMEITSMPAELDELTRRITQLEIEREALRKERD 435

Query: 552 QLDRQVRDAGLWSATTEANIVD-VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           +  RQ                  +R  ++Q     +R   L  Q E+   +I Q     +
Sbjct: 436 EASRQRLAELERELANLREQEQVLRSQWEQERQALERINALKEQIEQTRIEIEQALRAAD 495

Query: 611 AEKTAILI 618
             + + L 
Sbjct: 496 YTRASELQ 503



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 64/218 (29%), Gaps = 19/218 (8%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y     +RL+ +  +          +  +             +  ++++K  L++     
Sbjct: 252 YRGEFEERLKAVLDEIRASEGEIIVFIDEVHTVVGAGAAEGAMDAANMLKPMLARGELHA 311

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRL 541
             A           L E  + +      +  L++ +  +F     VE    +   + +R 
Sbjct: 312 IGA---------TTLDEYRKHIEK----DPALERRFQPVFVDEPSVEDTISILRGLRERY 358

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEK 600
                  +L               T             +A   L      +  + +E+ +
Sbjct: 359 ELHHKVRILDSALVAAAVLSHRYITNRFLPDKAIDLVDEAAARLRMEITSMPAELDELTR 418

Query: 601 QIAQVTAKGE---AEKTAILISILHEVHIQIHQIESQE 635
           +I Q+  + E    E+       L E+  ++  +  QE
Sbjct: 419 RITQLEIEREALRKERDEASRQRLAELERELANLREQE 456


>gi|153004211|ref|YP_001378536.1| hypothetical protein Anae109_1344 [Anaeromyxobacter sp. Fw109-5]
 gi|152027784|gb|ABS25552.1| conserved hypothetical protein [Anaeromyxobacter sp. Fw109-5]
          Length = 732

 Score = 44.5 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 79/291 (27%), Gaps = 28/291 (9%)

Query: 359 PDSFIRCYGKTAFEKLIVESLP---LVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           P    R       ++ +  + P     +       E  S  +P+    +   ++   N +
Sbjct: 267 PGRTQRLKTLREVKEQMEWAYPGTVRRNKDLLAILERLSRESPETAIRVNPRVRGLANSM 326

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K+   R    +    R   L +K   E +       + AR  +       L +    K  
Sbjct: 327 KN---REGVLEG-AARGGLLEKKARDEQALVAWLQAEPARQAELGAALPALDRLQAAK-- 380

Query: 476 LSKKPSLREAALLL-------TLINHPAILQEQYQELADIRYD-NNELQ-----KLWSFL 522
                  RE  L+        +L++    +    +E      + +   Q     +L   L
Sbjct: 381 ----ERTRERDLVFQSLTMNSSLLSAARAISRVAEERPKKDLERDPAYQQREWPRLRESL 436

Query: 523 FSDFVE-QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
                         ++   L E       +++       GL               +   
Sbjct: 437 ERLERTLDLGADRAQLRYALVEAAALPADQRIPPLDAAVGLTPGAPPDEAARRIDAFLDR 496

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           L    R      +   +E+   +    G  ++   L + L     Q+ + +
Sbjct: 497 LYAGTRLADRKTRLALLERASTK-DLTGRKDRFLELFAALRPFERQLREEQ 546


>gi|73958811|ref|XP_862479.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 11 [Canis familiaris]
          Length = 1976

 Score = 44.5 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 881  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 940

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 941  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1000

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1001 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1060

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1061 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1117

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1118 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1158


>gi|218767997|ref|YP_002342509.1| replicative DNA helicase [Neisseria meningitidis Z2491]
 gi|121052005|emb|CAM08314.1| putative replicative DNA helicase [Neisseria meningitidis Z2491]
          Length = 468

 Score = 44.5 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 14/168 (8%)

Query: 475 KLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            L       E ++L   ++ +PA        ++   +  +E + ++  +     E +   
Sbjct: 18  SLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIAKLINESRPAD 76

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L         ++L+       L +           + Y + +    R R + R
Sbjct: 77  VITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV----RERSIMR 126

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           Q  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 127 QLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 172


>gi|326930633|ref|XP_003211448.1| PREDICTED: myosin-10-like [Meleagris gallopavo]
          Length = 1837

 Score = 44.5 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 103/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 737  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 796

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 797  ERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 856

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              L+E  L+         + E   +LA+       L KL     +    +E++    E+ 
Sbjct: 857  KFLKEKKLME------DRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKT 910

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +      + 
Sbjct: 911  RQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE---EELQAALARGDEEAVQK 967

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 968  NNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTE 1015



 Score = 37.2 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 80/243 (32%), Gaps = 22/243 (9%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR---YWKKNA 454
             + + +L   +++    ++++ + Y   +  ++RLQQ     + +     +     +K  
Sbjct: 1252 EENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ 1311

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1312 KKFDQMLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1366

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +                    + +L++  R            + ++
Sbjct: 1367 NKQLRADMEDLMSSKDDVGKN--------------VHELEKSKRTLEQQVEEMRTQLEEL 1412

Query: 575  RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                Q       R  +  +  +   ++  Q   +   EK  +L+  + E+  ++     Q
Sbjct: 1413 EDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQ 1472

Query: 635  EAM 637
             A+
Sbjct: 1473 RAL 1475


>gi|284167347|ref|YP_003405625.1| Kinetochore-Ndc80 complex, subunit Spc25 [Haloterrigena turkmenica
           DSM 5511]
 gi|284017002|gb|ADB62952.1| Kinetochore-Ndc80 complex, subunit Spc25 [Haloterrigena turkmenica
           DSM 5511]
          Length = 655

 Score = 44.5 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 45/137 (32%), Gaps = 7/137 (5%)

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL-----CERGFGELLKQLDRQVRDAGLWS 564
             + EL  L++FL      ++     +  Q L             +++L+ + R+     
Sbjct: 103 LKDPELADLFAFLLETNEARQAVARGDDLQELIMRPVDTDEIQAEIERLEGRKREIDDQL 162

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILH 622
              E     +     +   +      L  + E  + ++ +     +   E+ + L   L 
Sbjct: 163 EELEQLETRLPDLEAKRKRVSDEIESLEDELETAQAELEEANVDVDERREEQSELEERLE 222

Query: 623 EVHIQIHQIESQEAMIE 639
           ++     +++     IE
Sbjct: 223 DLRETRSELDRVRERIE 239



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 50/143 (34%), Gaps = 9/143 (6%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           + +Q +EL  +     +L+     +  +    +    E     L E      + +   + 
Sbjct: 158 IDDQLEELEQLETRLPDLEAKRKRVSDEIESLED-ELETAQAELEEANVD--VDERREEQ 214

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--KTA 615
            +             ++ +  ++     +    L  ++EE+++++  ++   + +  +  
Sbjct: 215 SELEERLEDLRETRSELDRVRERIETERESIDALEDEREEVQERLESLSTGDDDDIGRIE 274

Query: 616 ILISILHEVHIQI----HQIESQ 634
             I  L E   ++     Q++S 
Sbjct: 275 AEIETLQEEKAELSGEISQLQST 297


>gi|260655510|ref|ZP_05860998.1| replicative DNA helicase [Jonquetella anthropi E3_33 E1]
 gi|260629958|gb|EEX48152.1| replicative DNA helicase [Jonquetella anthropi E3_33 E1]
          Length = 453

 Score = 44.5 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 47/140 (33%), Gaps = 10/140 (7%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            + + +        E A++   +     L E    L+   + + + ++++  +      +
Sbjct: 2   PVPQVRSLPSSPEAERAVIGGCLLDRNALIEVQDILSPDDFFDAQPRRVFEVMCDMTRRE 61

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +          L  RG G+     +  V  A +      A             A   + R
Sbjct: 62  RPVDVLTTKDELNRRGDGDPASDQNFLVECADMLPTAANAA----------YYARIVQER 111

Query: 590 LLSRQKEEIEKQIAQVTAKG 609
            L R+  +  ++IAQ+  +G
Sbjct: 112 ALRRRVIQAGQKIAQLGYEG 131


>gi|253747657|gb|EET02234.1| Liver stage antigen-like protein [Giardia intestinalis ATCC 50581]
          Length = 1778

 Score = 44.5 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 77/249 (30%), Gaps = 25/249 (10%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA------IRDRLQQLFQKYITEH 443
                S        + E      +  + D++    Y         I + +         E 
Sbjct: 912  LHGMSPEDLQLMEQREREFNMKLKELTDRRDELLYKDDTEALKLIEEEIWAFVDA--EEE 969

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
                       R +  +    R       K K  ++    E  +   ++    + ++Q Q
Sbjct: 970  KRMRIQAADALRKKRAQEEEDRRRAEIEKKIKEEQERLAEERRIQEEML---ELQKKQQQ 1026

Query: 504  ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR----- 558
            E A+            + L  + VE++     E  QR+       L+ +L+         
Sbjct: 1027 EYAEQETR-------KAELLREAVEKEQLERIEEEQRIKAEAKRRLIDELEATAERAAAE 1079

Query: 559  -DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
                + +   E   +          A  ++ +LL +QKE++E+++A+   + E +     
Sbjct: 1080 DRVRVQAELEEMARIRKELEEAARTASEEKRKLLLQQKEQLEREMAETAKRHEEDVARR- 1138

Query: 618  ISILHEVHI 626
               L  +H 
Sbjct: 1139 HKELQALHE 1147



 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 62/232 (26%), Gaps = 12/232 (5%)

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            D + +    +   +RL    +      +            +         + +     + 
Sbjct: 827  DHEQQLVQLRDEAERLLNENKLLAGRSAVPRHLHPNEFDSKSISVSFFEGLLNEPTHSEG 886

Query: 477  SKKPSLREAALLLTLINHPAILQEQYQELADIRYD-----NNELQKLWSFLFSDFVEQKY 531
                +  E  LL  L        +    ++            E       L     E  Y
Sbjct: 887  VSLTTGEELRLLAILEQGDYEALDPLHGMSPEDLQLMEQREREFNMKLKELTDRRDELLY 946

Query: 532  FLPEEIHQRLCER---GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                E  + + E          ++  R      L     +      R   ++ +   +  
Sbjct: 947  KDDTEALKLIEEEIWAFVDAEEEKRMRIQAADALRKKRAQEEEDRRRAEIEKKIKEEQER 1006

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIESQEAM 637
                R+ +E   ++ +   +  AE   + A L+    E   Q+ +IE ++ +
Sbjct: 1007 LAEERRIQEEMLELQKKQQQEYAEQETRKAELLREAVE-KEQLERIEEEQRI 1057


>gi|218885137|ref|YP_002434458.1| hypothetical protein DvMF_0028 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756091|gb|ACL06990.1| hypothetical protein DvMF_0028 [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 187

 Score = 44.5 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI-----LISILHEVHIQIHQIESQEA 636
           K+   L ++ E++++QI+QV      +         L   ++E+  QI+++++Q A
Sbjct: 110 KQIEELQKKIEQLQQQISQVEQGSSPDGVKESVTRPLYQQINELQQQINELQAQAA 165


>gi|47459006|ref|YP_015868.1| replicative DNA helicase [Mycoplasma mobile 163K]
 gi|47458334|gb|AAT27657.1| replicative DNA helicase [Mycoplasma mobile 163K]
          Length = 452

 Score = 44.5 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E   + +L+ +P  L +    L    + N   QK++  +              I  +
Sbjct: 7   ENLEKTYIASLLINPKNLSKTVDLLEPEDFFNKTHQKIFWSIKELLYNNLKIDFNSIKNQ 66

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           L +     +   ++  + +   WS+  E  +      + + +  Y R R +  
Sbjct: 67  LEKEPEKNIAN-INNVLAELIPWSSFEENAL-----YFHKEILNYSRKRKVKE 113


>gi|181857|gb|AAA53189.1| dystrophin [Homo sapiens]
 gi|158323700|gb|ABW34380.1| dystrophin [Shuttle vector phcAd.DYS-FL]
          Length = 3685

 Score = 44.5 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 2529 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 2584

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 2585 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 2644

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2645 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 2703

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 2704 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 2763

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2764 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 2823

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2824 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 2882

Query: 550  -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 2883 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 2942

Query: 609  GEA 611
             + 
Sbjct: 2943 TDE 2945



 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L +  +K   +     +  K        K  S R   ++L+  +      L E  +   
Sbjct: 1701 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 1760

Query: 491  -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                  I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 1761 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 1820

Query: 546  ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                 ELL++ D   +         E  I                        +   Q  
Sbjct: 1821 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 1880

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1881 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 1932


>gi|22299995|ref|NP_683242.1| endopeptidase Clp ATP-binding chain B [Thermosynechococcus
           elongatus BP-1]
 gi|54035849|sp|Q8DG71|CLPB2_THEEB RecName: Full=Chaperone protein ClpB 2
 gi|22296180|dbj|BAC10004.1| endopeptidase Clp ATP-binding chain B [Thermosynechococcus
           elongatus BP-1]
          Length = 887

 Score = 44.5 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 27/220 (12%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R +++    +     +  +++    + ++     + ++AL+   +   
Sbjct: 321 YRKYIEKDAALERRFQQVYIGQPSVEDTISILRGLKDRYEIHHNVKITDSALVAAAMLSD 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL------ 549
             + ++Y     I   +    KL   +       K    E + +RL +     L      
Sbjct: 381 RYISDRYLPDKAIDLVDEAAAKLKMEI-----TTKPAELEALERRLRQLEMERLSLKQEE 435

Query: 550 ---LKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-----ALYKRFRLLSRQKEEIEKQ 601
              L Q   Q     L     E   +  RQ   QA       L +R   L  ++++++ Q
Sbjct: 436 SLPLSQAPLQATRDRLQRIEAEIAQLQPRQQAMQARWQAEKELLERINSLKEEEDQVKLQ 495

Query: 602 IAQVTAKGEAEKTAIL--------ISILHEVHIQIHQIES 633
           I Q        K A L           L     Q+ ++++
Sbjct: 496 IEQAERDYNLNKAAQLKYGRLETLQRELEATEAQLLELQA 535


>gi|332361624|gb|EGJ39428.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis SK1056]
          Length = 641

 Score = 44.5 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 541

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++   +     L       +    ++  ++   L +R   L  Q E+++ QI+
Sbjct: 542 KAEQEALRE---ETEQVDLDKPAPANDYQLQKENQKEQRRLARRLEQLEAQIEDLDSQIS 598

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
           Q+       +       L E   QI Q+ +  +EAM+E
Sbjct: 599 QLQEAM---QATNDAGELMESQQQIDQLTAAQEEAMLE 633


>gi|327401278|ref|YP_004342117.1| chromosome segregation protein SMC [Archaeoglobus veneficus SNP6]
 gi|327316786|gb|AEA47402.1| chromosome segregation protein SMC [Archaeoglobus veneficus SNP6]
          Length = 1170

 Score = 44.5 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 73/216 (33%), Gaps = 14/216 (6%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           +   L +  +  + E +       +  R    +   +R  Q ++ +          E  +
Sbjct: 677 LSKELLEKERMLMEEVTVLNSKKAEIIRRLRVEEDRRREAQKAVDEINSRISAIRSEIDV 736

Query: 488 LLTLINHPAILQEQYQELADIRYD----NNELQKLWSFL--FSDFVEQKYFLPEEIHQRL 541
           L   IN      E+ +++ADI       + E +K +  L      +E+      EI   +
Sbjct: 737 LSQRIN------EEKEKIADIDVRISERDAERRKAFEELSGLDAEIEKISRRIAEIGSEV 790

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +        ++ +  ++          +   +    ++  A   R   + R  +E    
Sbjct: 791 EKIEKRLKGSEIPKLSKEYEELKEELSRHRESLMSVEKRIEAADYRREQIKRAIDEKNAA 850

Query: 602 IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQE 635
           I ++  +      K     + + E+  ++ ++ S+E
Sbjct: 851 IQRIDEEVSSLKAKIEDGRNRIEELKRELEKLRSEE 886


>gi|312377224|gb|EFR24109.1| hypothetical protein AND_11552 [Anopheles darlingi]
          Length = 772

 Score = 44.5 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 67/194 (34%), Gaps = 12/194 (6%)

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL--TLINHPAILQEQYQELA 506
               +        P Q    SSL+    S      E  +L    +  H    +++ ++LA
Sbjct: 148 PNLPDDDGTGNGRPPQGTAPSSLLPADASVADLDIEEYILQGGAMPKHSVEFRDKNEQLA 207

Query: 507 DIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
           +        ++L   L       E        +  RL +      +++ +R      L  
Sbjct: 208 EE-------RRLIQQLSKDDHDEEYLLQKISMLQLRLDDAQKTVQIEREERTAVQRNLEK 260

Query: 565 ATTEA-NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
           A  +   + D  +  + A     R  L  +++  +E +I   + + E      L   L E
Sbjct: 261 ARQDMQEMRDKCEELRAAKQDAVRELLTLQEQHRVEMRITHNSLQEEIGARETLERRLCE 320

Query: 624 VHIQIHQIESQEAM 637
           +  ++ +++++ A 
Sbjct: 321 LRTELERLQAENAA 334


>gi|301783137|ref|XP_002927000.1| PREDICTED: LOW QUALITY PROTEIN: lamin-A/C-like [Ailuropoda
           melanoleuca]
          Length = 799

 Score = 44.5 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 227 DSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTAL 286

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 287 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 342

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 343 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 388

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 389 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 445

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 446 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 499

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 500 KLALDMEIHAYRKLLEGEE 518


>gi|298250062|ref|ZP_06973866.1| replicative DNA helicase [Ktedonobacter racemifer DSM 44963]
 gi|297548066|gb|EFH81933.1| replicative DNA helicase [Ktedonobacter racemifer DSM 44963]
          Length = 468

 Score = 44.5 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 44/141 (31%), Gaps = 10/141 (7%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L  +    EA +L +L+  P  +      L    +  +  + ++  +   +   +    
Sbjct: 3   RLLPQNVEAEAGVLGSLLIDPEAIANITSFLRAEDFYRDGHRLIYEAIVMLYDRHEPADF 62

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L  R     L++   +     L +    +   +      + +AL +R      Q
Sbjct: 63  VTVCHELERRNK---LEEAGGEDYVIALINQVPTSGNAEYYARIVEQMALLRRLIHAGSQ 119

Query: 595 K-------EEIEKQIAQVTAK 608
                   ++ E  + Q    
Sbjct: 120 IVATAYGEKDAEAALEQAEQT 140


>gi|289209511|ref|YP_003461577.1| response regulator receiver protein [Thioalkalivibrio sp. K90mix]
 gi|288945142|gb|ADC72841.1| response regulator receiver protein [Thioalkalivibrio sp. K90mix]
          Length = 431

 Score = 44.5 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 76/227 (33%), Gaps = 20/227 (8%)

Query: 426 QAIRDRLQQLFQKY-ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           QA+R  +++L ++  + + S   R  ++            R   ++ ++     +  L E
Sbjct: 141 QALRQEVERLRRELMLRQQSASEREAQREIERLRTALSEARDEATAALQRAEESEGQLAE 200

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-HQRLCE 543
                 +   P    ++   + D      EL+KL + +     E      E +   RL E
Sbjct: 201 LQAAEVIAEEP---LDEEAAVPDSPEQVEELEKLRARVREFENENIRLDHELVELDRLRE 257

Query: 544 ---RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
              R   + L++  R  ++         A          +          L+ +  + E+
Sbjct: 258 TVQRERDQALEEAARLRQERNQQCERAAAAERARADLEARCSEQDGSSSALAERLAKREQ 317

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
           ++A+   +              ++  +I ++E      +    +SGR
Sbjct: 318 ELAEARERN------------QDLRARIRELELGSVAPDATPALSGR 352


>gi|213626334|gb|AAI71708.1| Unknown (protein for MGC:198435) [Danio rerio]
          Length = 1174

 Score = 44.5 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 93/273 (34%), Gaps = 15/273 (5%)

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH----IKDQKLRYY 423
              F  +    + + D   K E E         + +L+   +    +    ++ +  R  
Sbjct: 400 HERFCGVKAPQISVTDSNMKTELEQAFGRNTQLQQQLDKSRRELQENQDQMVELRMDREG 459

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               +R +  QL Q             + ++   D       L +S L++ KL      R
Sbjct: 460 AESRLRQQEDQLAQLQEELRRTLENSPQSDSMQLDLLTVQAELSESQLLRQKLEDTLRQR 519

Query: 484 EAAL--LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           E  L  L   +       ++  E    ++   ++  L   +  + V Q     EE  Q++
Sbjct: 520 ERELTALKGALKDEVASHDKEMEALREQFS-QDMDALRHSM--ETVSQSQLEIEEERQKV 576

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                  + ++L+     +  W     +   +     +   + +++     + K E+E++
Sbjct: 577 NASILA-MEEELEGYKEQSEQWKKQFSSANQE-----RGQYSAFQKLLKAQQGKRELEEK 630

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +  V  + +   +  ++  L +    + + +S+
Sbjct: 631 LLAVVKQTDETDSNSVMKELQQCRDSLKKAQSE 663



 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 92/287 (32%), Gaps = 13/287 (4%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +          I + +  +    ++  +       + R      L++     KD+ +   
Sbjct: 817  QKRLLDRSLDKINKEMESMMGDSRQSVQVLQSQLEEFRDRSRRELQDAQRLSKDRLVELQ 876

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             +QA+    Q+   +   E              ++      + M++ L   + S+    R
Sbjct: 877  RAQALLKTTQEEVSRVKKELLSCTEERDSAQLDKELLSSRLKNMETELQTDRSSQTDRSR 936

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNEL-------QKLWSFLFSDFVEQKYFLPEE 536
            E  LL   +    I  E  +E +     N  +        +L S L  +   +     ++
Sbjct: 937  EIRLLEDKVKTLEI--ELDEEKSGAELLNERITRCREQVDQLRSELMQERSARHDLEMDK 994

Query: 537  IHQRLCERGFGELLKQLDRQVRDAG---LWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                   +     +  +  Q R +    +     +     +R   ++   +    R L R
Sbjct: 995  SALERQIKELKSRIADMGTQSRPSAGVTMLENKVQELEDRLRSEEREKNTIQAAQRRLDR 1054

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            + +++   + Q   +  AE+   L   +  +  Q+ + E +   +EG
Sbjct: 1055 KLKDVTATLDQERNQH-AEQRDQLSLRVKALKRQLDESEGEVERLEG 1100


>gi|187607231|ref|NP_001120601.1| citron (rho-interacting, serine/threonine kinase 21) [Xenopus
           (Silurana) tropicalis]
 gi|171847291|gb|AAI61636.1| LOC100145758 protein [Xenopus (Silurana) tropicalis]
          Length = 2068

 Score = 44.5 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 105/282 (37%), Gaps = 36/282 (12%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKL 420
             +   +   EKL         +  K        ++ + +      ++   N +K D + 
Sbjct: 667 QAKERAEKELEKLKNRDDSNDAIKKKLLDAEERRHSLENQVRRLETVERRENKLKEDIQT 726

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + +++ +L ++Y     G  R      ++           ++  ++ ++ K  
Sbjct: 727 KSEQIQQMAEKIMELEERYREAQVGAQRLEVHLKQNEQVYE-----EKARNIETQMKKDL 781

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           + +EA  L  +        +  +E+ +     +E + + + L S            + QR
Sbjct: 782 ADKEALELSRI--------KNEEEICEKNRILSEQKAMINALESKITS--------LEQR 825

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-ALALYKRFRLLSRQKEEIE 599
           L E      L + ++   ++ L++        ++    +Q    L  +   +  Q +++E
Sbjct: 826 LAE------LSEANKLAANSSLFTQRNMKAQEEMISELRQQKFYLETQAGKIEAQNQKLE 879

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ--IESQEAMIE 639
           +Q+ ++  +   +K     + L E+  ++ +  +E +E  +E
Sbjct: 880 EQLERINNQDHTDK-----NRLLELETRLREISLEHEEQKLE 916


>gi|301780766|ref|XP_002925800.1| PREDICTED: serine/threonine-protein kinase MRCK alpha-like isoform
           1 [Ailuropoda melanoleuca]
          Length = 1719

 Score = 44.5 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 49/107 (45%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QVR++       E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKTLKEEIEKLRKQVRESSHLEQQLEEANSVRRELDDAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           E+ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 ELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|217039380|gb|ACJ76849.1| DNA primase [Streptococcus agalactiae]
 gi|217039388|gb|ACJ76853.1| DNA primase [Streptococcus agalactiae]
          Length = 105

 Score = 44.5 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 2/102 (1%)

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                +   I        +  Y   + + L       + +     R   ++ +       
Sbjct: 6   AYVEKIAKLIAKSPSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHHRSQQQASPSVQ 65

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
           +   +Q  L +       +  E  L   L+NHP +L E    
Sbjct: 66  TSATVQ--LPQTGKLSAITKTEMQLFHRLLNHPYLLNEFRNR 105


>gi|5032281|ref|NP_000100.2| dystrophin Dp427c isoform [Homo sapiens]
          Length = 3677

 Score = 44.5 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 2521 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 2576

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 2577 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 2636

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2637 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 2695

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 2696 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 2755

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2756 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 2815

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2816 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 2874

Query: 550  -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 2875 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 2934

Query: 609  GEA 611
             + 
Sbjct: 2935 TDE 2937



 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L +  +K   +     +  K        K  S R   ++L+  +      L E  +   
Sbjct: 1693 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 1752

Query: 491  -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                  I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 1753 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 1812

Query: 546  ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                 ELL++ D   +         E  I                        +   Q  
Sbjct: 1813 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 1872

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1873 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 1924


>gi|5032283|ref|NP_003997.1| dystrophin Dp427m isoform [Homo sapiens]
          Length = 3685

 Score = 44.5 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 2529 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 2584

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 2585 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 2644

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2645 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 2703

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 2704 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 2763

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2764 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 2823

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2824 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 2882

Query: 550  -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 2883 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 2942

Query: 609  GEA 611
             + 
Sbjct: 2943 TDE 2945



 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L +  +K   +     +  K        K  S R   ++L+  +      L E  +   
Sbjct: 1701 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 1760

Query: 491  -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                  I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 1761 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 1820

Query: 546  ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                 ELL++ D   +         E  I                        +   Q  
Sbjct: 1821 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 1880

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1881 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 1932


>gi|154499602|ref|ZP_02037640.1| hypothetical protein BACCAP_03258 [Bacteroides capillosus ATCC
           29799]
 gi|150271680|gb|EDM98924.1| hypothetical protein BACCAP_03258 [Bacteroides capillosus ATCC
           29799]
          Length = 449

 Score = 44.5 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 65/170 (38%), Gaps = 12/170 (7%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L +++     + E  +EL    +   + ++++  ++S F       P  +   + 
Sbjct: 16  AEQAVLGSMLIDSRCVPEVVEELRGEDFYLRQNREIYETIYSMFNFSLTIDPVTVLDHMR 75

Query: 543 ERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
           + G            +L++            S   + +++         L    +    +
Sbjct: 76  QNGVYDENTSRSYLLQLMEITPTAANVKEYVSIVKDKSLLRRIAETAGDLTALIQEGTGT 135

Query: 593 RQ--KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            Q   E  E++I  +     ++    + +++  V+ +++++ +Q++ I G
Sbjct: 136 AQEVLEAAEQRIYAIRQGRGSQGLEHISTVILSVYERLNELAAQDSEIPG 185


>gi|126324680|ref|XP_001363133.1| PREDICTED: similar to rho/rac-interacting citron kinase isoform 1
           [Monodelphis domestica]
          Length = 2070

 Score = 44.5 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 96/299 (32%), Gaps = 40/299 (13%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
             +   +   EKL         M  K        ++ + + +    ++   N +KD    
Sbjct: 665 QAKERAEGELEKLRNREDSSEGMRKKLFEAEERRHSLENQVKRLETVERRENRLKDDIQT 724

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+               +         +++ + + K       
Sbjct: 725 KSQQIQQMADKILELEEKHREAQVSAQHLEVHLKQKEQLYEEKIKVLDNQIKK------- 777

Query: 481 SLREAALLLTLIN-HPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            L +   L  ++  H     E+ + L++    I   +++++ L   +       K     
Sbjct: 778 DLADKETLENMMQRHEEEAHEKSKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANS 837

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALAL 584
            +  +   +   E++ +L +Q       +   EA    + +  +           + L L
Sbjct: 838 SLFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKSRLLEL 897

Query: 585 YKRFRL-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             R R            L RQ  E++  + +  +     + + L S    +  Q+ Q +
Sbjct: 898 ETRLREVSLEHEEQKLELKRQLTELQLSLQERES-----QLSALQSARTALESQLRQAK 951


>gi|16081854|ref|NP_394249.1| chromosome segregation protein related ptotein [Thermoplasma
           acidophilum DSM 1728]
 gi|10640066|emb|CAC11918.1| chromosome segregation protein related ptotein [Thermoplasma
           acidophilum]
          Length = 1140

 Score = 44.5 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 23/267 (8%), Positives = 85/267 (31%), Gaps = 4/267 (1%)

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
            + +      +          +              +  +  + ++ Q         +  
Sbjct: 610 VQDIDAGRRLMGIFRLVTLDGDIFDPGGSITGGYRNYASDYASALRMQHDLEGMKIQLSS 669

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            +    +        +    + + R  +     + L + +    +  K+     ++    
Sbjct: 670 LMDDRSRIKREMDQAFSEMSEASRRTGEIMKEQEMLKKEAERSREELKQVMDDISSTDRA 729

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGE 548
           + +   ++ E  + +     D ++ Q+  + L+     + +    ++   + E       
Sbjct: 730 IADKKRMIDENEKVIEQKTLDLHKYQEALNDLYDRIDPEFFKNIGDLSNEINEVRSEIDA 789

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT-A 607
           +  +L++      + S+  +     +     Q  ++      L+ +K E+E++  +   A
Sbjct: 790 VASELNQITSRRDILSSERKHLEDQMIDTKLQENSIAAEIDDLNGKKRELEEKAKKYQYA 849

Query: 608 KGEAE-KTAILISILHEVHIQIHQIES 633
             + E +   L + + E   QI ++E+
Sbjct: 850 LNDLEGRYGNLSAQVREADKQIREMEN 876


>gi|325128034|gb|EGC50932.1| replicative DNA helicase [Neisseria meningitidis N1568]
          Length = 468

 Score = 44.5 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 14/168 (8%)

Query: 475 KLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            L       E ++L   ++ +PA        ++   +  +E + ++  +     E +   
Sbjct: 18  SLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIAKLINESRPAD 76

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L         ++L+       L +           + Y + +    R R + R
Sbjct: 77  VITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV----RERSIMR 126

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           Q  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 127 QLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 172


>gi|301769405|ref|XP_002920121.1| PREDICTED: centrosomal protein of 120 kDa-like isoform 2
           [Ailuropoda melanoleuca]
          Length = 936

 Score = 44.5 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 41/402 (10%), Positives = 110/402 (27%), Gaps = 16/402 (3%)

Query: 242 FHKGKNL-YNFFGALNYLQKSIRKDVRRNSSSFIILVEGY--MDVLSL-CQAGVQNVVSS 297
           F     L Y++    +         V    +  + L + Y   D  +L  Q     +   
Sbjct: 471 FPVNCILRYSYPFFGSAAPIMTNPPVEVRKNMEVFLPQSYCAFDFATLPHQLQDTFLRIP 530

Query: 298 LGTALTEY--QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           L   L       + L     RI L         R    + +         +         
Sbjct: 531 LLVELWHKDKMSKDLLLGIARIQLSNVLSSEKTRFLGSSGEQCWRQTYSESVPFIAAQGS 590

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
                          +  + +  + + D    +  +    +      E +   +   + +
Sbjct: 591 NNRIMDLSYTVTLEDYGLVKMREIFVSDSS--QLKQKELAHMQALAEEWKKRDRERESLV 648

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K +   Y   +    +     +K   +        ++  +    +     L     ++  
Sbjct: 649 KKKVAEYTVLEGKLQKTLIDLEKREQQLVLAESEVQRERKELKLERERNLLELQDSIRRA 708

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E   L        +  ++ +    +    N+ + L         +Q      
Sbjct: 709 KEDCVHQVELERLKM----RQLEDDKVRLQQQLSDAENKYKILEKEFLQFKDQQSNKPEI 764

Query: 536 EIHQRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            +   +        EL ++L+   +    +       + ++ +  Q+      +   L +
Sbjct: 765 RLQSEINLLTLEKVELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKK 822

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           Q+EE+E+   +  A  E +        L ++  +++++  QE
Sbjct: 823 QQEELEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 864


>gi|256087069|ref|XP_002579701.1| hypothetical protein [Schistosoma mansoni]
 gi|238665175|emb|CAZ35940.1| expressed protein [Schistosoma mansoni]
          Length = 2018

 Score = 44.5 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 85/246 (34%), Gaps = 27/246 (10%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +    R   S+ +  RL++  +    E     R   +  +          + +S+     
Sbjct: 304 ESDVERKRLSEQLA-RLREELEVQSLEVDKLSRERDRIKQTLSLTKEEHEMSESARQNLN 362

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELAD-IRYDNNELQKLWS--FLFSDFVEQKYF 532
              +    E   L T +    + +E  + +++       + + L     +       +  
Sbjct: 363 EHVREIESELDRLKTSLR--DMRKELDEAISERDNLQTEQSRTLRELDAIQKTLSSTEQR 420

Query: 533 ------LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                     I ++L      + +  LD++  DA   ++  +A I ++ +   QA     
Sbjct: 421 AVNFREELATIREQLRRVELEKEI--LDQEKNDAITTASKIQAKIDELNEDLNQAHNREN 478

Query: 587 RFRL--------LSRQKEEIEK-----QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +++         L  Q+ + E+      +        AE+ A L   L E   ++ ++ S
Sbjct: 479 QYKSRIARLETVLESQEHDAEQLTHQISLTHAKESRLAEERANLRVELQEQRDELEKLYS 538

Query: 634 QEAMIE 639
           ++++I+
Sbjct: 539 EKSLIQ 544


>gi|121634660|ref|YP_974905.1| replicative DNA helicase [Neisseria meningitidis FAM18]
 gi|120866366|emb|CAM10109.1| putative replicative DNA helicase [Neisseria meningitidis FAM18]
 gi|325132299|gb|EGC54992.1| replicative DNA helicase [Neisseria meningitidis M6190]
 gi|325137730|gb|EGC60305.1| replicative DNA helicase [Neisseria meningitidis ES14902]
 gi|325142142|gb|EGC64566.1| replicative DNA helicase [Neisseria meningitidis 961-5945]
 gi|325202325|gb|ADY97779.1| replicative DNA helicase [Neisseria meningitidis M01-240149]
 gi|325207922|gb|ADZ03374.1| replicative DNA helicase [Neisseria meningitidis NZ-05/33]
          Length = 468

 Score = 44.5 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 14/168 (8%)

Query: 475 KLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            L       E ++L   ++ +PA        ++   +  +E + ++  +     E +   
Sbjct: 18  SLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIAKLINESRPAD 76

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L         ++L+       L +           + Y + +    R R + R
Sbjct: 77  VITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV----RERSIMR 126

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           Q  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 127 QLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 172


>gi|308811757|ref|XP_003083186.1| large Ala/Glu-rich protein (ISS) [Ostreococcus tauri]
 gi|116055065|emb|CAL57461.1| large Ala/Glu-rich protein (ISS) [Ostreococcus tauri]
          Length = 495

 Score = 44.5 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 92/293 (31%), Gaps = 30/293 (10%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           E    ++   +D+  K        ++ +   +L   +K   + I D        +     
Sbjct: 118 EACARDASEALDITTKYYEARLRASSEERVIQLIRQVKRLEDEITD------LKRVHALE 171

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKG-PSQRLMQSSLVKGKLSKKPSLREAALLL- 489
           ++Q+ +   +  +       +++  R  +   ++ + + S  +     +  ++E   +  
Sbjct: 172 IEQVIETERSAAANTSEKSIRSSTQRSIEAEKAKAVAEMSAREAHARAEVLVKERDAMEE 231

Query: 490 -------TLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                   +    A      ++L +    +      +Q L   L +              
Sbjct: 232 TLVAANEHVAQLKAERSTFEEKLQNMKRKLEESEANVQDLGRLLSARGRSSDEDDDGSER 291

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA------LYKRFRLLS 592
            +L        ++ L +Q+ DA   +A       +  Q   +A+         +      
Sbjct: 292 FKLDSSAASAAVEALKKQLEDARAETARAVKLAEETAQLEIEAIKRGMEMSSRRARDETE 351

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           ++  E+E+++         E   +    L E+  QI + E+   + +     S
Sbjct: 352 QRIAELERELRVA-----LETKKVAFEELQELRTQIERYEALTRLQDEAMSSS 399


>gi|110623257|emb|CAI94867.2| heat shock protein 101 [Triticum turgidum subsp. durum]
          Length = 913

 Score = 44.5 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 74/205 (36%), Gaps = 6/205 (2%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL-LLTLI 492
           + ++KY+ + + + R +++          +  +++    K +      +++ AL +   +
Sbjct: 320 EEYRKYVEKDAAFERRFQQVFVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVIAAQL 379

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           +   I+     +   I   +     +   L S   E      + I   +      +   +
Sbjct: 380 SSRYIMGRHLPD-KAIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALEKEKDK 438

Query: 553 LDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
              + R   +     +       ++  Y++        R L +++EE++  + +   + +
Sbjct: 439 -ASKARLVDVRKELDDLRDKLQPLQMKYRKEKERIDEIRRLKQRREELQFTLQEAERRMD 497

Query: 611 AEKTAIL-ISILHEVHIQIHQIESQ 634
             + A L    L EV   I ++E +
Sbjct: 498 LARVADLRYGALQEVDAAIAKLEGE 522


>gi|157073949|ref|NP_001096687.1| cingulin [Canis lupus familiaris]
 gi|229553903|sp|A7YH32|CING_CANFA RecName: Full=Cingulin
 gi|115345817|gb|ABI95366.1| cingulin [Canis lupus familiaris]
          Length = 1190

 Score = 44.5 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 78/219 (35%), Gaps = 16/219 (7%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-----KGPSQRLMQSSLVKGKLSKKPSLR 483
            +R++   +  + E     +  ++    ++          + L +    K ++ +   LR
Sbjct: 425 SERVRCGLEAQVKELQDKLKQAQEPEPAKEALMKDLLEARELLEEVLEGKQRMEEHLRLR 484

Query: 484 EAAL--LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           E  L  L   +    +     +     +    + ++L   +     +      E   ++ 
Sbjct: 485 ERELTALKGALKE-EVASRDQEVEHVRQQCQRDAEQLRRSIQDATQDHAALEVE---RQK 540

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE---- 597
                 EL K+L+    + G W +  + N  ++R   Q+ L L      +  +  E    
Sbjct: 541 MSTLVRELQKELEETSEETGHWQSMFQKNKDELRATKQELLQLRMEKEEIEEELGEKIEV 600

Query: 598 IEKQIAQVTA-KGEAEKTAILISILHEVHIQIHQIESQE 635
           +++++ Q  A   +  +   L   L +   ++ +++ ++
Sbjct: 601 LQRELGQARAGAADTRQMEELKKELCQTQKELKELKEEQ 639



 Score = 41.0 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 86/262 (32%), Gaps = 24/262 (9%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              W  E E  S      + E +   +       D+       + +  RLQ L Q+   + 
Sbjct: 883  KEWATEAEKNSGGLSRLQDETQRLRQALQASQADRDTARLDKELLAQRLQGLEQEAENKK 942

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA----ALLLTLINHPAILQ 499
                   ++     ++    +  +       +L  +   R       L   L+   +  Q
Sbjct: 943  RSQDDRARQLKGLEEKVSRLEAELDEERSTVELLTERVTRGRDQVDQLRSELMQERSARQ 1002

Query: 500  EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
            +   +   +   N +L+            + +  P     +L  +   EL ++L  + R+
Sbjct: 1003 DLECDKISLERQNKDLKS------RLASSEGFQKPSASLSQLESQN-QELQERLQAEERE 1055

Query: 560  AGLWSATTEANIVDVRQGYQQALA-----------LYKRFRLLSRQKEEIEKQIAQVTAK 608
              +  +T       V++   Q              L  R + L RQ +E E++I ++   
Sbjct: 1056 KTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSLRVKALKRQVDEAEEEIERLD-- 1113

Query: 609  GEAEKTAILISILHEVHIQIHQ 630
            G  +K    +   HEV+ Q+  
Sbjct: 1114 GLRKKAQRELEEQHEVNEQLQA 1135


>gi|332983141|ref|YP_004464582.1| replicative DNA helicase [Mahella australiensis 50-1 BON]
 gi|332700819|gb|AEE97760.1| replicative DNA helicase [Mahella australiensis 50-1 BON]
          Length = 446

 Score = 44.5 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 39/114 (34%), Gaps = 3/114 (2%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++       E ++L  ++     +    + L    + +   ++L+  + S +   +    
Sbjct: 7   RIPPHNIEAEQSVLGAMLLDKEAVAAATEVLHKDDFYSEANKELYDAMVSLYEAGQPVDL 66

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             + ++L +      L+ +        L ++      VD      +  A+ +R 
Sbjct: 67  VTVTEQLRK---RNTLEAVGGLSYVTALSASVPTTANVDYYIRIVEEKAILRRL 117


>gi|307183173|gb|EFN70082.1| Nucleoprotein TPR [Camponotus floridanus]
          Length = 2354

 Score = 44.5 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 87/284 (30%), Gaps = 30/284 (10%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              +R+         +ER   E          + +         + ++L+Q     I +  
Sbjct: 869  HLERQFATAQDRLKEERELNERIQTELDQTRESETQSSQKIDELSNKLRQAAAHSIAKPL 928

Query: 445  GYGRYWKKNAR---------HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
                   K  +           + K  S++L  +     +        E  L      + 
Sbjct: 929  TGDESLVKRVKELEMQLDTYQTETKSLSEQLKMARQQNQQYCDIAESAETQLRELTAEYN 988

Query: 496  AILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIHQRLCE-----RGFG 547
               +E    L + R +   LQK    L    +     +     E+  RL E         
Sbjct: 989  KCKEELETALKESRVEIISLQKKVKELNDELAKISNGRQETNSELRDRLAEAERKVEELD 1048

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA---- 603
            EL  +L+    D    S+T +       +   Q  +  +    L  + +++++++     
Sbjct: 1049 ELKGELELLKNDLKSVSSTVKEAEDKYAREMMQHSSDLQILAKLKEEAQQVQQKLNILTQ 1108

Query: 604  ---------QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
                     ++      E+    ++ + E   ++  +++Q A++
Sbjct: 1109 ERNAAVETLEIEKLASKEREQKFVNEIEETQKRLVDLDAQNALL 1152


>gi|291402753|ref|XP_002717729.1| PREDICTED: nuclear pore complex-associated protein TPR [Oryctolagus
            cuniculus]
          Length = 2814

 Score = 44.5 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 84/256 (32%), Gaps = 23/256 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
             ++  +L          +     RY   Q   +  ++        +       +K  +  
Sbjct: 1153 QEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQKLTATTQKQEQII 1212

Query: 458  DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
            +      R     L   ++  +   +E  +L   ++   + Q++   LA+ R  N  L  
Sbjct: 1213 NTMTQDLRGANEKLAVAEVRAENLKKEKEMLK--LSEVRLSQQRESLLAEQRGQNLLLTN 1270

Query: 518  LWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
            L   +       +    + +  ++   E     L K+L+ +V      +   +  ++D +
Sbjct: 1271 L-QTIQGILERSETETKQRLSNQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTK 1329

Query: 576  QGYQQALALYKRFRLL----SRQKEEIEKQIAQVT--------------AKGEAEKTAIL 617
            +     + L+   + L     ++   +++ ++ V                  + E    L
Sbjct: 1330 RQLDTEINLHLNTKELLKNAQKEIATLKQHLSNVEVQLASQSSQRTGKGQSSDKEDVDDL 1389

Query: 618  ISILHEVHIQIHQIES 633
            +S L +   Q++ ++ 
Sbjct: 1390 LSQLRQAEEQLNDLKE 1405



 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 31/288 (10%), Positives = 90/288 (31%), Gaps = 46/288 (15%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKL-----RYYYSQAIRDRLQQLFQKYITE 442
                N      DE  +L          I+D  L     +    + + +++ +L ++    
Sbjct: 749  EAKSNELTRAVDELHKLLKEAGEANKAIQDHLLEVEESKDQMEKELLEKIGKLEKELENA 808

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--------GKLSKKPSLREAALLLTLINH 494
            +       +K A   +++  +     +++ K         +L       +  LLL  + +
Sbjct: 809  NDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVEAQDQLLLEKLEN 868

Query: 495  PAILQEQYQELADIRYDNNELQKLWSFL---------FSDFVEQKYFLPEEIHQ------ 539
              I +   + + ++      L++               S  +EQ     + + +      
Sbjct: 869  KRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKAN 928

Query: 540  -------------RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR-----QGYQQA 581
                          +  +   + ++ L  ++ +A       +  +         +   Q 
Sbjct: 929  KHSSVLERDNQRMEIQVKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQH 988

Query: 582  LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            L  Y+    L +Q + +   + ++    E E+     S + E+ +++ 
Sbjct: 989  LVSYRNIEELQQQNQRLLVALRELGETREREEQETTSSKITELQLRLE 1036


>gi|241555876|ref|XP_002399536.1| TATA element modulatory factor, putative [Ixodes scapularis]
 gi|215499676|gb|EEC09170.1| TATA element modulatory factor, putative [Ixodes scapularis]
          Length = 1130

 Score = 44.5 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 76/232 (32%), Gaps = 17/232 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR- 483
           ++ + + L           +     + + A  R      +   + + +  K++    +R 
Sbjct: 647 AKDLEESLADAHVNLAGAMAKLDNAYSEIAELRHVNSECETRAEEATLSAKMAAGEEIRR 706

Query: 484 --EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-FSDFVEQKYFLPEEIHQR 540
             E   L        +LQ   +    +   +   ++    L  +    Q+     E+  +
Sbjct: 707 AMEQTKLEAAAERTTLLQRIEELQMALTVADQRAERREDVLRINVRELQQQLQEAEVRNQ 766

Query: 541 LCERGF----GELLKQLDRQVRDAGL----WSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +        LL+Q++       +    W    ++    + +    A  L +R R L 
Sbjct: 767 EITQNLSSATRPLLRQIENLQSTFSVQSASWERVEKSLTDRLNEAQTHATLLAERERSLG 826

Query: 593 RQKEEIEKQIAQVTAKG-----EAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +  +++ +   +  +      E ++ A  +  L E    + + E +EA  E
Sbjct: 827 EKCSDLQLRATALETQNAALRREKQELAAEVQELRERQRDLDESERREATFE 878



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 1/89 (1%)

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           ER    L  +L+     A L +    +          +A AL  +   L R+K+E+  ++
Sbjct: 798 ERVEKSLTDRLNEAQTHATLLAERERSLGEKCSDLQLRATALETQNAALRREKQELAAEV 857

Query: 603 AQV-TAKGEAEKTAILISILHEVHIQIHQ 630
            ++   + + +++    +    +  ++ Q
Sbjct: 858 QELRERQRDLDESERREATFEAIKTRLEQ 886


>gi|149726424|ref|XP_001504570.1| PREDICTED: coiled-coil domain containing 100 [Equus caballus]
          Length = 987

 Score = 44.5 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 89/280 (31%), Gaps = 13/280 (4%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 646 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 703

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++            ++    + ++  + + +Q S+ + K   
Sbjct: 704 AEYTILEGKLQKTLIDLEKREQQLVIAESELQRERKELKSERERNLQELQDSIRRAKEDC 763

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   +  L      L +Q  +  +      + + L         +Q       +
Sbjct: 764 VHQVELERLKIKQLEEEKHRLHQQLNDAEN------KYKILEKEFHQFKDQQSNKPEIRL 817

Query: 538 HQRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
              +        EL ++L+   +    +       + ++ +  Q+      +   L +Q+
Sbjct: 818 QSEINLLTLEKVELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQ 875

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           EE+E+   +  A  E +        L ++  +++++  QE
Sbjct: 876 EELEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 915


>gi|109098938|ref|XP_001085560.1| PREDICTED: citron Rho-interacting kinase [Macaca mulatta]
          Length = 2069

 Score = 44.5 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 36/299 (12%), Positives = 95/299 (31%), Gaps = 40/299 (13%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
             +   +   EKL         +  K        ++ + + +    ++   N +KD    
Sbjct: 664 QAKERAERELEKLQNREDSSEGIRKKLVEAEERRHSLENKVKRLETMERRENRLKDDIQT 723

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+               +         +++ + + K       
Sbjct: 724 KSQQIQQMADKILELEEKHREAQVSAQHLEVHLKQKEQHYEEKIKVLDNQIKK------- 776

Query: 481 SLREAALLLTLIN-HPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            L +   L  ++  H     E+ + L++    I   +++++ L   +       K     
Sbjct: 777 DLADKETLENMMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANS 836

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALAL 584
            +  +   +   E++ +L +Q       +   EA    + +  +           + L L
Sbjct: 837 SLFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKNRLLEL 896

Query: 585 YKRFRL-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             R R            L RQ  E++  + +  +     +   L +    +  Q+ Q +
Sbjct: 897 ETRLREVSLEHEEQKLELKRQLTELQLSLQERES-----QLTALQAARAALESQLRQAK 950


>gi|50927521|gb|AAH79570.1| Cux1 protein [Mus musculus]
          Length = 667

 Score = 44.5 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 97/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + E + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 90  DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEQYNKEFAEVKNQEVTIKALKEKIREY 149

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q   ++        ++  ++   +   +          KL +     +           
Sbjct: 150 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRT 209

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 210 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 269

Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 270 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 329

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q+    +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 330 QLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 373


>gi|3645991|emb|CAA20895.1| EG:118B3.2 [Drosophila melanogaster]
          Length = 1082

 Score = 44.5 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 31/249 (12%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            E   ++T +E       L +    + D +      + + +    LFQ          R 
Sbjct: 398 MEETHYSTNEELQATLQELADLQTQLTDTQTEN---ERLAEEKDVLFQSLC-------RQ 447

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
            +K    R Q    Q L+     +       S RE  LL        +++   +E   + 
Sbjct: 448 TEKLNESRTQISTLQELLLRDTKQPAPEVSASEREQKLL-------DLIKTSQEEREAVL 500

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               EL    + +                 +L  +   E +  LD Q+  A       EA
Sbjct: 501 LKQEELGAELAEMKQAREAG----------QLELQRQRERIALLDSQLDAANAERRQGEA 550

Query: 570 NIVDVRQGYQQALALYKRFRLLSR----QKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
                 +   Q      R   L      + EE+E  +++      +E   +       + 
Sbjct: 551 QFSQAMEEISQRAIEISRLSTLLENARSKIEELEADLSRGDKTDLSEVLDVARKEKDALE 610

Query: 626 IQIHQIESQ 634
            ++ +++ Q
Sbjct: 611 ERVAELQDQ 619


>gi|15676781|ref|NP_273926.1| replicative DNA helicase [Neisseria meningitidis MC58]
 gi|7226124|gb|AAF41296.1| replicative DNA helicase [Neisseria meningitidis MC58]
 gi|316985780|gb|EFV64724.1| replicative DNA helicase [Neisseria meningitidis H44/76]
 gi|325139961|gb|EGC62490.1| replicative DNA helicase [Neisseria meningitidis CU385]
 gi|325200429|gb|ADY95884.1| replicative DNA helicase [Neisseria meningitidis H44/76]
          Length = 468

 Score = 44.5 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 14/168 (8%)

Query: 475 KLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            L       E ++L   ++ +PA        ++   +  +E + ++  +     E +   
Sbjct: 18  SLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIAKLINESRPAD 76

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L         ++L+       L +           + Y + +    R R + R
Sbjct: 77  VITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV----RERSIMR 126

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           Q  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 127 QLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 172


>gi|325144322|gb|EGC66627.1| replicative DNA helicase [Neisseria meningitidis M01-240013]
          Length = 468

 Score = 44.5 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 14/168 (8%)

Query: 475 KLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            L       E ++L   ++ +PA        ++   +  +E + ++  +     E +   
Sbjct: 18  SLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIAKLINESRPAD 76

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L         ++L+       L +           + Y + +    R R + R
Sbjct: 77  VITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV----RERSIMR 126

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           Q  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 127 QLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 172


>gi|313104240|sp|P11532|DMD_HUMAN RecName: Full=Dystrophin
          Length = 3685

 Score = 44.5 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 2529 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 2584

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 2585 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 2644

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2645 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 2703

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 2704 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 2763

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2764 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 2823

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2824 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 2882

Query: 550  -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 2883 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 2942

Query: 609  GEA 611
             + 
Sbjct: 2943 TDE 2945



 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L +  +K   +     +  K        K  S R   ++L+  +      L E  +   
Sbjct: 1701 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 1760

Query: 491  -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                  I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 1761 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 1820

Query: 546  ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                 ELL++ D   +         E  I                        +   Q  
Sbjct: 1821 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 1880

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1881 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 1932


>gi|312792498|ref|YP_004025421.1| chromosome segregation atpase-like protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179638|gb|ADQ39808.1| chromosome segregation ATPase-like protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 1350

 Score = 44.5 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 80/228 (35%), Gaps = 8/228 (3%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y Q +  +L+   QK   E     +         ++    +    S +      +  
Sbjct: 732 RRRYRQMLISQLEDEVQKLSVELDNKKQERNAQKNLVEKLKNERDSFPSLVDLDTAFEMI 791

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             RE   L        + ++  + L+      +E+  + + L     +  +    +  Q+
Sbjct: 792 EERENQKLKLQKEIEFLEKKTRELLSKENSLKHEISVIATKLSVTAAKDNFLKLAQEAQK 851

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKEE 597
           L      +L  +++++   +   ++  E        ++       +L  R+  LS +K E
Sbjct: 852 LKS-VLVDLENEVEKEKLVSRTVTSKREQTLQIEESLQNLSSDLQSLKTRWESLSLKKAE 910

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQEAMIEGF 641
           IEK+++   A+   E+    I  L  +  +I      ++   A I  F
Sbjct: 911 IEKRLSSDDAQKLFEEQQKAIERLDSIPKEIESFNRNLQEVIAKISRF 958


>gi|304413747|ref|ZP_07395191.1| Replicative DNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283838|gb|EFL92232.1| Replicative DNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 467

 Score = 44.5 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 49/144 (34%), Gaps = 10/144 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           KL       E ++L  L+          + + +  + +   +++++ +       +    
Sbjct: 22  KLPPYSLEAEQSILGGLMLDNQRWDNVSERVTNSDFFSYPHRRIFTEMQCLLEINQPIDL 81

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L ++G    L+ +      A L   T  A           A A   R R + R+
Sbjct: 82  ITLSESLEQKGD---LESIGGFAYLAELSKNTPSAAN-------IGAYADIVRERAIVRE 131

Query: 595 KEEIEKQIAQVTAKGEAEKTAILI 618
              +  +IA    + +   +  L+
Sbjct: 132 MISVANEIADAGYEPQGRSSEELL 155


>gi|268686247|ref|ZP_06153109.1| replicative DNA helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|268626531|gb|EEZ58931.1| replicative DNA helicase [Neisseria gonorrhoeae SK-93-1035]
          Length = 468

 Score = 44.5 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520
            +       +    L       E ++L   ++ +PA        ++   +  +E + ++ 
Sbjct: 5   AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +     E +      + + L         ++L+       L +           + Y +
Sbjct: 64  SIAKLINESRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    R R + RQ  E+  +IA+     +      L+        QI   ES     +G
Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171

Query: 641 F 641
           F
Sbjct: 172 F 172


>gi|73958807|ref|XP_862428.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 9 [Canis familiaris]
          Length = 2004

 Score = 44.5 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 909  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 968

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 969  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1028

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1029 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1088

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1089 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1145

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1146 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1186


>gi|320590881|gb|EFX03324.1| hypothetical protein CMQ_3253 [Grosmannia clavigera kw1407]
          Length = 863

 Score = 44.5 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 13/163 (7%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
           ++L+     LAD      +  +L   +    +++K    E   +    R   + L+ L+ 
Sbjct: 95  SLLERHEAYLADAE---RDRAELLKRIDQLEMDKKELEAENARKIEENRALLDQLEALNS 151

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ---IAQVTAKGEAE 612
            V D+       EA +   +Q  ++      R   + R    +E +   +       E+E
Sbjct: 152 NVTDSDTRLKLLEATLQSSQQIIRRLEGAAGRADDMERHLAALEAEQALLQSTLVASESE 211

Query: 613 KTAILISILH------EVHIQIHQIE-SQEAMIEGFGKMSGRL 648
             + +           ++  Q+ ++E   +   E   ++ GR+
Sbjct: 212 ARSAIQRWKRAERGIADLQDQLERMERETKQEKERHMEVMGRV 254


>gi|299741011|ref|XP_001834155.2| hypothetical protein CC1G_09112 [Coprinopsis cinerea okayama7#130]
 gi|298404513|gb|EAU87651.2| hypothetical protein CC1G_09112 [Coprinopsis cinerea okayama7#130]
          Length = 1313

 Score = 44.5 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 30/311 (9%), Positives = 87/311 (27%), Gaps = 18/311 (5%)

Query: 326  PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDML 385
                 A    +L        +  + +     E  +              +   +  + M 
Sbjct: 816  RDDEFAVLKSELEAQWSNTESMSSQIDTLMREKHEVESEKDQLQKTLAELEARIDSMSMD 875

Query: 386  WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
            +       +    D +     +    +++  D   R    ++    LQ+  QK   +   
Sbjct: 876  YNDLVNKNAQLESDLQDAFNKNNDAEMDY-DDVVNRNSELESQVSELQEDHQKMERDLGE 934

Query: 446  YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
                 ++  R         +L +  + + + + +    E                  +++
Sbjct: 935  SEARVEQLNRRISLLEEEVQLNKDIVSRTQETIRKRDAEIE---------EYSNRVAEQV 985

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            A+      EL  +         EQ        +Q +         K++++ ++       
Sbjct: 986  AESERLQEELSTMRREYNRLLDEQSRADHSMSNQEIENS------KRIEQLIKQKAEVDV 1039

Query: 566  TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHE 623
              +A+   +     +   L ++   L +   + E ++ ++      + E    L   L  
Sbjct: 1040 ELDASRDKIAALQDEVERLRRQVHTLKQDSADNEVEVGRLRKQHAADKEDIMGLNMALDA 1099

Query: 624  VHIQIHQIESQ 634
               ++  I+ Q
Sbjct: 1100 KQQELELIKRQ 1110


>gi|291386502|ref|XP_002709771.1| PREDICTED: dynactin 1 [Oryctolagus cuniculus]
          Length = 1279

 Score = 44.5 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 109/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 419

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +    V  +     + + R
Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEVMNEMNDELQENAR 479

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441



 Score = 37.9 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330


>gi|126324682|ref|XP_001363216.1| PREDICTED: similar to rho/rac-interacting citron kinase isoform 2
           [Monodelphis domestica]
          Length = 2055

 Score = 44.5 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 96/299 (32%), Gaps = 40/299 (13%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
             +   +   EKL         M  K        ++ + + +    ++   N +KD    
Sbjct: 665 QAKERAEGELEKLRNREDSSEGMRKKLFEAEERRHSLENQVKRLETVERRENRLKDDIQT 724

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+               +         +++ + + K       
Sbjct: 725 KSQQIQQMADKILELEEKHREAQVSAQHLEVHLKQKEQLYEEKIKVLDNQIKK------- 777

Query: 481 SLREAALLLTLIN-HPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            L +   L  ++  H     E+ + L++    I   +++++ L   +       K     
Sbjct: 778 DLADKETLENMMQRHEEEAHEKSKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANS 837

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALAL 584
            +  +   +   E++ +L +Q       +   EA    + +  +           + L L
Sbjct: 838 SLFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKSRLLEL 897

Query: 585 YKRFRL-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             R R            L RQ  E++  + +  +     + + L S    +  Q+ Q +
Sbjct: 898 ETRLREVSLEHEEQKLELKRQLTELQLSLQERES-----QLSALQSARTALESQLRQAK 951


>gi|15679964|gb|AAH14289.1| Cut-like homeobox 1 [Mus musculus]
          Length = 678

 Score = 44.5 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 97/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + E + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 101 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q   ++        ++  ++   +   +          KL +     +           
Sbjct: 161 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRT 220

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 221 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 280

Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 281 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 340

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q+    +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 341 QLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 384


>gi|315077539|gb|EFT49597.1| DivIVA domain protein [Propionibacterium acnes HL053PA2]
          Length = 384

 Score = 44.5 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 3/148 (2%)

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              I     + +       +  +N  L+     L       +    +++           
Sbjct: 46  YRAIEVDDFVDKVEAAFMTLTDENERLKAQVEAL-RSGEPGEQRPDQDLLN--ENEHLRA 102

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            +++L  Q     + S   +      +   ++A  L +    L  Q EE+ +   +    
Sbjct: 103 QVEELRSQQNGRSVNSGEVDRAKAAQQDAEKRARQLEQERVSLQSQVEELRQAARRPGQD 162

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636
            +  + A L S    +  Q+   +S  A
Sbjct: 163 IDPAEVARLRSENERLGAQLRDAQSLAA 190


>gi|291228452|ref|XP_002734195.1| PREDICTED: chromosome 20 open reading frame 23-like [Saccoglossus
           kowalevskii]
          Length = 1409

 Score = 44.5 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 99/317 (31%), Gaps = 12/317 (3%)

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
           I+      I    +    L   +D              ++        +   +     + 
Sbjct: 663 IEKEREDFIQERDLERQKLQDEKDEMKLKISQEMERLMEIEQSQKEAAEKARQAIISEQQ 722

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
                 R +     +        + +    ++   + + +  +    E        +   
Sbjct: 723 KLEEHRRQQKVKLDEEFKRLEMQESMIKESARDSENEIARRLEVLQQERDKELELIEDER 782

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLRE--AALLLTLINHPAILQEQYQELADIRYDN 512
           +  D+    Q   +   +  +      LRE    LL        + Q Q QE+ D+    
Sbjct: 783 KKLDELQLQQETARKIALDIETDAMLKLREDSEKLLEARKEIEKLKQLQIQEIRDVEEKI 842

Query: 513 NELQ-KLWSFLF---SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
            + +  L   L    +    +++ L E+          GE     +++  +  L S   E
Sbjct: 843 KKKRIALGQELEKQRNHLENERHALSEKEVLLKQILELGEYETDEEKKDIEMELQSLQEE 902

Query: 569 ANIVDVRQ------GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
              +D+R+        Q  L +    R L  +KE  ++Q+ +        +T  L+SI  
Sbjct: 903 KKKLDLRELQLNEKEQQDCLTINSELRALEEKKETNQRQLKEKNETLNEMETENLLSIQK 962

Query: 623 EVHIQIHQIESQEAMIE 639
           E+  +I  ++++   IE
Sbjct: 963 EISEKIKNLDARRMKIE 979



 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 52/372 (13%), Positives = 120/372 (32%), Gaps = 51/372 (13%)

Query: 319  LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE- 377
            +  D +   +    +  + +L       ++  + +    D +  I+       ++L  + 
Sbjct: 798  IALDIETDAMLKLREDSEKLLEARKEIEKLKQLQIQEIRDVEEKIKKKRIALGQELEKQR 857

Query: 378  --------SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA-- 427
                    +L   ++L K+  E   + T +E+ ++E+ L++     K   LR        
Sbjct: 858  NHLENERHALSEKEVLLKQILELGEYETDEEKKDIEMELQSLQEEKKKLDLRELQLNEKE 917

Query: 428  ------IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                  I   L+ L +K  T         +       +   S +   S  +K   +++  
Sbjct: 918  QQDCLTINSELRALEEKKETNQRQLKEKNETLNEMETENLLSIQKEISEKIKNLDARRMK 977

Query: 482  LREAALLLT------------LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            + E   LL              I    IL+++  +L D+   ++   ++          Q
Sbjct: 978  IEEDEALLRELKGKHESTITKAIEDKKILEKERLQLVDLEKQHDMNTEMALAEIDRRKVQ 1037

Query: 530  KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 E+    + E+      +  + QV     W+         V     + L       
Sbjct: 1038 LDEETEKEMVIIEEKKKQLEQQHEEIQVVPESEWNEPRSIQRKAVSVSTVEDLREMSNLY 1097

Query: 590  LLSRQKE----------------EIEKQIAQVTAKGEAEKTAILISILHEVHI------Q 627
              SRQ+                 E+E+Q  +  ++ + ++    I    E+        +
Sbjct: 1098 DESRQRAQDKESHQLEERFKKLHELEEQTNRAESELQRKRQEFEIQRTKEIERIKLEKYK 1157

Query: 628  IHQIESQEAMIE 639
            + ++E QE + E
Sbjct: 1158 LQEMEDQERINE 1169


>gi|237724804|ref|ZP_04555285.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. D4]
 gi|265756195|ref|ZP_06090524.1| ATP-dependent chaperone ClpB [Bacteroides sp. 3_1_33FAA]
 gi|229436999|gb|EEO47076.1| endopeptidase subunit Clp ATP-binding B [Bacteroides dorei
           5_1_36/D4]
 gi|263233786|gb|EEZ19395.1| ATP-dependent chaperone ClpB [Bacteroides sp. 3_1_33FAA]
          Length = 862

 Score = 44.5 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 67/212 (31%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++           +  +++    + +   K  +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQTVMVAEPDTLSTISILRGLKERYENHHKVRIKDEAIIAAVELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + E++     I   +    KL     S   E            +          +   
Sbjct: 377 RYITERFLPDKAIDLMDEAAAKLRMERDSVPEELDEISRHLKQLEIEREAIKREKDESKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           Q  +  +     +      +  +Q    L  + +   ++ E+++ +  +   +G+  K  
Sbjct: 437 QQLNKEIAELKEQETSYKAK--WQNEKELVNKIQQNKQEIEQLKFEAEKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L + + ++   +   +   AMI+
Sbjct: 495 EIRYGKLQALENEIKDIQEDLKHKQGDSAMIK 526



 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 72/272 (26%), Gaps = 41/272 (15%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       + L  + +  +DM              +    +   +      I        
Sbjct: 220 RIIRGDVPDNLKNKQIFSLDMGALVAGAKYKGEFEERLKSVVNEVVKAEGSI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      ++  P  L                   +   L   +             R+ +
Sbjct: 328 ERRFQTVMVAEPDTLSTI---------------SILRGLKERYENHHKV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + +        +  I  + +    A  L      +  + +EI + + 
Sbjct: 366 EAIIAAVELSNRYITER----FLPDKAIDLMDEA---AAKLRMERDSVPEELDEISRHLK 418

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           Q+  + EA K     S L +++ +I +++ QE
Sbjct: 419 QLEIEREAIKREKDESKLQQLNKEIAELKEQE 450


>gi|148686149|gb|EDL18096.1| EF-hand calcium binding domain 4A, isoform CRA_c [Mus musculus]
          Length = 306

 Score = 44.5 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           S  +E      E + Q L  R          L ++L++Q+ +      +      + R  
Sbjct: 88  SACLEAAAREREGLEQALRRRESEHEREVRGLYEELEQQLGEQRHRRQSQNLPREEQRGH 147

Query: 578 YQQALALYKRFRLLSR---QKEEIEKQIAQ--VTAKGEAEKTAILISILHEVHIQIHQIE 632
               L L  R + L R   ++ E+E+Q+            +   L      +  Q+ Q +
Sbjct: 148 L--ELELQTREQELERAGLRQRELEQQLQARAAEQLEAQAQHIQLQRAYEAIRAQLDQAQ 205

Query: 633 SQEAMIEGFGKMSGR 647
            Q + +E  G+  GR
Sbjct: 206 EQLSRLE--GEAQGR 218


>gi|85720588|sp|P70403|CASP_MOUSE RecName: Full=Protein CASP
          Length = 678

 Score = 44.5 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 97/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + E + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 101 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q   ++        ++  ++   +   +          KL +     +           
Sbjct: 161 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRT 220

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 221 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 280

Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 281 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 340

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q+    +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 341 QLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 384


>gi|260642567|ref|ZP_05416414.2| putative mobilizable transposon, excision protein [Bacteroides
           finegoldii DSM 17565]
 gi|260621453|gb|EEX44324.1| putative mobilizable transposon, excision protein [Bacteroides
           finegoldii DSM 17565]
          Length = 335

 Score = 44.1 bits (102), Expect = 0.065,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 10/75 (13%)

Query: 24  YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF---LSAL 80
           Y    ++  N      W   P  +E   SF  N  +  +Y F     G  +     L A 
Sbjct: 37  YSPVKQQGINL-----WYKSPLREETEASFKVNTERNQWYDFGLGKGGGIIELAAHLYAT 91

Query: 81  LGCSFIESVQRLAAI 95
               ++  ++R+A  
Sbjct: 92  DHVPYL--LERIAEQ 104


>gi|240127850|ref|ZP_04740511.1| replicative DNA helicase [Neisseria gonorrhoeae SK-93-1035]
          Length = 462

 Score = 44.1 bits (102), Expect = 0.065,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 14/178 (7%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                 +    L       E ++L   ++ +PA        ++   +  +E + ++  + 
Sbjct: 2   PPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIA 60

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               E +      + + L         ++L+       L +           + Y + + 
Sbjct: 61  KLINESRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV- 113

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
              R R + RQ  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 114 ---RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQGF 166


>gi|113475164|ref|YP_721225.1| primary replicative DNA helicase [Trichodesmium erythraeum IMS101]
 gi|110166212|gb|ABG50752.1| primary replicative DNA helicase [Trichodesmium erythraeum IMS101]
          Length = 2605

 Score = 44.1 bits (102), Expect = 0.065,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 55/169 (32%), Gaps = 16/169 (9%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L  +    E A+L  ++  P  +    + L    +     Q ++  +   + + K    
Sbjct: 5   RLPPQNIESEEAILGGILLDPEAINRVTELLHPEFFAIQAHQIIYKAMCQLYSQGKPTDL 64

Query: 535 EEIHQRLCERGFGE-------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
             +   L +    E       +++ L+R V    +           +R+   QA      
Sbjct: 65  MTVTSWLSDHNQLEKIGGRVKIVQLLERTVSAVNIDQYAALVLDKYIRRKLIQAGNEIFD 124

Query: 588 F-----RLLSRQKEEIEKQIAQVTAKGEAEK----TAILISILHEVHIQ 627
                   L    ++ E++I  +T     +     +  LI+   E+  +
Sbjct: 125 LGFQTATKLEIILDQAEQKIFALTQDKPQQDLVPISETLINTFQEIEDR 173


>gi|322785580|gb|EFZ12235.1| hypothetical protein SINV_00990 [Solenopsis invicta]
          Length = 1719

 Score = 44.1 bits (102), Expect = 0.066,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 83/300 (27%), Gaps = 38/300 (12%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQAIRDRLQQL 435
                 +    RE             E     +     +K +  +          R+ +L
Sbjct: 353 RRRLQEEQDRFRELTAHLERQFTTAQERLKEERELSERLKTELDQAREIETQCSQRIDEL 412

Query: 436 FQKYITEHSGYGRYW----------------KKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             K     +                      + +    + K  S++L  +     +    
Sbjct: 413 TNKLRQATAHSIAKPLTGEEDLVKRVKELQVQLSTSQVEAKSFSEQLKAARQQSQQYCDI 472

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEE 536
               E  L      +    +E    L + R +   LQK    L    +     ++    E
Sbjct: 473 AESAETQLREMTTEYNKCKEELENALKESRVEIISLQKRVKDLSDDLAKISNGRHETDSE 532

Query: 537 IHQRLCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +  +L E     E L +L  ++        +   +  +    Y + +  +     +  + 
Sbjct: 533 LRNKLAEAERKVEELDELKGELELLKSDLKSVSVSAKEAEDKYAREMMQHSSDLQILAKL 592

Query: 596 EEIEKQIA-----------------QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           +E  +QI                  ++      ++    I+ + E   +I  +++Q A++
Sbjct: 593 KEETEQIQYRLDSLTQERNAAVEALEIEKSASKQREQKYINEIEECQKRITDLDTQNALL 652


>gi|167517239|ref|XP_001742960.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778059|gb|EDQ91674.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1244

 Score = 44.1 bits (102), Expect = 0.066,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 93/249 (37%), Gaps = 17/249 (6%)

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIR-DRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
           EL          ++D   R      I  +RLQ L ++   E + +    +++     +  
Sbjct: 728 ELRRENFVLRAQVEDTDERTRTRGTISDERLQDLERRLQAEQAAHATTKEQHRGALAELR 787

Query: 462 PSQRLM---QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
              +     Q +L+  +  +   L+E  L  TL     +  E  Q  A++     + + L
Sbjct: 788 TELQGTIARQDALLTRRNEEVRRLKE-QLEQTLAAMEELRAEARQAQANLAERQQDCEAL 846

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT--EANIVDVRQ 576
              + ++    K  L         +      L + D +V    L SA    + ++  ++ 
Sbjct: 847 -QAMLTEVRSGKAALAAA---HKPKEDSVASLLKPDEEVTVVQLRSALAARDRDLKQLQA 902

Query: 577 GYQQALALYK-RFRLLSRQKEEI----EKQIAQVTAKGEAEKTA-ILISILHEVHIQIHQ 630
            Y QA+A ++ +   L  +   I    E ++ +   + EA K      S   E+  ++  
Sbjct: 903 DYDQAMAGHREQLEQLRLEYASIKTGFEARLKETRRELEAAKQEHRPYSRAKELQTELEA 962

Query: 631 IESQEAMIE 639
           ++++ A ++
Sbjct: 963 LQARYAQLK 971


>gi|110623255|emb|CAI94866.2| heat shock protein 101 [Triticum turgidum subsp. durum]
          Length = 913

 Score = 44.1 bits (102), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 73/205 (35%), Gaps = 6/205 (2%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL-LLTLI 492
           + ++KY+ + + + R +++          +  +++    K +      +++ AL +   +
Sbjct: 320 EEYRKYVEKDAAFERRFQQVFVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVIAAQL 379

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           +   I      +   I   +     +   L S   E      + I   +      +   +
Sbjct: 380 SSRYITGRHLPD-KAIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALEKEKDK 438

Query: 553 LDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
              + R   +     +       ++  Y++        R L +++EE++  + +   + +
Sbjct: 439 -ASKARLVDVRKELDDLRDKLQPLQMKYRKEKERIDEIRSLKQRREELQFTLQEAERRMD 497

Query: 611 AEKTAIL-ISILHEVHIQIHQIESQ 634
             + A L    L EV   I ++E +
Sbjct: 498 LARVADLRYGALQEVDAAIAKLEGE 522


>gi|3288585|emb|CAA12257.1| preprotein translocase [Phormidium laminosum]
          Length = 582

 Score = 44.1 bits (102), Expect = 0.066,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 34/85 (40%)

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             E+   L  + R   + S   +       +  + A  L++  + + RQ E++E  IAQ 
Sbjct: 204 IDEVDSVLIDEARTPLIISGQVDRPNEKYTRASEVARELWQIRQGVKRQIEKVEAAIAQA 263

Query: 606 TAKGEAEKTAILISILHEVHIQIHQ 630
             +G   +   L   L  +  ++ +
Sbjct: 264 IQEGNKSEANQLNRELDRLKEELDR 288


>gi|327266160|ref|XP_003217874.1| PREDICTED: LOW QUALITY PROTEIN: TATA element modulatory factor-like
           [Anolis carolinensis]
          Length = 1105

 Score = 44.1 bits (102), Expect = 0.066,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 63/180 (35%), Gaps = 7/180 (3%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
            R   G      Q      +L+     +E  L+     H  +   + +  +     +   
Sbjct: 616 SRVLDGKEDLEKQHRENIKQLNSLVERQEKDLVRL---HTDLEDLEERNRSVQAALDGAY 672

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           ++L     ++  +        +   +  +   EL   L++   +A          + D+R
Sbjct: 673 KELADLHKANAAKDCVAQEAALSHEIKMK--EELGLALEKAQEEARQQQEALAIQVADLR 730

Query: 576 QGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              Q+A     ++   L ++  E+++++ +  ++   E +  + S    +  QI  +++ 
Sbjct: 731 LALQRAEQQTARKEDYLRQEISELQQRLQEAESR-NQELSQSVTSATRPLLRQIENLQAT 789


>gi|73958845|ref|XP_862885.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 27 [Canis familiaris]
          Length = 1987

 Score = 44.1 bits (102), Expect = 0.066,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 892  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 951

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 952  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1011

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1012 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1071

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1072 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1128

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1129 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1169


>gi|320102257|ref|YP_004177848.1| ATP-dependent chaperone ClpB [Isosphaera pallida ATCC 43644]
 gi|319749539|gb|ADV61299.1| ATP-dependent chaperone ClpB [Isosphaera pallida ATCC 43644]
          Length = 883

 Score = 44.1 bits (102), Expect = 0.067,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 79/214 (36%), Gaps = 14/214 (6%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++++I +     R ++           +  +++    + ++  K  +R++AL+       
Sbjct: 320 YREHIEKDPALERRFQPVFVGEPSVEDTIAILRGLKERYEVHHKVKIRDSALVAAAKLAD 379

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + ++Y     I   +    +L   L S   E        +  +L +R   +  ++  R
Sbjct: 380 RYITDRYLPDKAIDLVDEAASRLAMELQSVPTEIDVVQRRLLQLQLAKRMLRDETEEHAR 439

Query: 556 Q-VRDAGLWSATTEANIVDVRQGYQ-------QALALYKRFRLLSRQKEEIEKQIAQVTA 607
           + +       A  E  + D+R  ++           L +R   L+ Q +    +I Q   
Sbjct: 440 ERLAQVEEEIAQAEKQLADLRSQWEMEKAGLGDVQELRERLAALTTQYDRAWNEIRQAQQ 499

Query: 608 KGEAE------KTAILISILHEVHIQIHQIESQE 635
           +GE        + A L     ++  ++  +ESQE
Sbjct: 500 RGERPDESAFLELAKLDQERRDLAKRLEDLESQE 533


>gi|281208823|gb|EFA82998.1| hypothetical protein PPL_03778 [Polysphondylium pallidum PN500]
          Length = 1705

 Score = 44.1 bits (102), Expect = 0.067,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 78/281 (27%), Gaps = 10/281 (3%)

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
              E+  + +  L       E   +     ++ AE E      +   +    +    +  
Sbjct: 277 EKHEQERLAAEKLEQERIAAEKLEQERIAAEKLAEEERIAAEMLEQERIAAEKMEQERIA 336

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-SQRLMQSSLVKGKLSKKPSLREAAL 487
            ++L +  +    +        +K    R      ++  + +  ++ +      L +  +
Sbjct: 337 AEKLAEEERIAAEKLEQERIAAEKLEEERIAAEKLAEERIAAEKMEQERIAAEKLEQERI 396

Query: 488 LLTLINHPAILQEQYQE--LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
               +    I  E+ ++  +A  + +   +            E      E I        
Sbjct: 397 AAEKLEQERIAAEKLEQERIAAEKLEQERIAAEKLEQERIAAEHARLEQERIVAEEQRLE 456

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-------LLSRQKEEI 598
                 ++              E    +     + A    K             ++KE +
Sbjct: 457 REREEMEILAAEERVEQERIAAEKLEQERIAAEELAEKERKEREREEMEILAAEQEKERV 516

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +Q      + E E+ A +     E   Q+ ++   E +IE
Sbjct: 517 LEQEQLAQEREEQERIAAIDQEQQEKIDQLEKLNDNELVIE 557


>gi|268681774|ref|ZP_06148636.1| replicative DNA helicase [Neisseria gonorrhoeae PID332]
 gi|268622058|gb|EEZ54458.1| replicative DNA helicase [Neisseria gonorrhoeae PID332]
          Length = 468

 Score = 44.1 bits (102), Expect = 0.067,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520
            +       +    L       E ++L   ++ +PA        ++   +  +E + ++ 
Sbjct: 5   AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +     E +      + + L         ++L+       L +           + Y +
Sbjct: 64  SIAKLINESRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    R R + RQ  E+  +IA+     +      L+        QI   ES     +G
Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171

Query: 641 F 641
           F
Sbjct: 172 F 172


>gi|207743340|ref|YP_002259732.1| replicative dna helicase protein [Ralstonia solanacearum IPO1609]
 gi|300704314|ref|YP_003745917.1| replicative DNA helicase [Ralstonia solanacearum CFBP2957]
 gi|206594737|emb|CAQ61664.1| replicative dna helicase protein [Ralstonia solanacearum IPO1609]
 gi|299071978|emb|CBJ43308.1| replicative DNA helicase [Ralstonia solanacearum CFBP2957]
          Length = 473

 Score = 44.1 bits (102), Expect = 0.067,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 64/192 (33%), Gaps = 17/192 (8%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
            R             L   K+       E ++L  L+   A        + +  +   + 
Sbjct: 4   PRRYNPAMNAPTDPQLESLKVPPHSIEAEQSVLGGLLLDNAAWDRIADFINEFDFYRYDH 63

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE----ANI 571
           + ++  +     + K      ++++L   G  E +  L      A    +       A I
Sbjct: 64  RLIFHNIGKLISQAKPADVITVYEQLQAAGKAEEVGGLAYLNALAQNTPSAANIRRYAEI 123

Query: 572 VDVRQGYQQALAL---------YKRFRLLSRQKEEIEKQ---IAQVTAKGEAEKTAILIS 619
           V  R   +Q + +           + R + +  +E E +   IA+  A+G+      +  
Sbjct: 124 VRDRGVLRQLVTIADEISAGAFNPQGRDVRQLLDEAESKVFAIAEEGARGQKG-FLEIQP 182

Query: 620 ILHEVHIQIHQI 631
           +L +V  +I ++
Sbjct: 183 LLTQVVERIDEL 194


>gi|57100952|ref|XP_533766.1| PREDICTED: similar to TATA element modulatory factor 1 [Canis
           familiaris]
          Length = 1089

 Score = 44.1 bits (102), Expect = 0.067,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 63/175 (36%), Gaps = 7/175 (4%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +   Q      KL+     +E  L    ++   + ++     A +     EL  L  
Sbjct: 610 GKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKNRSIQAALDSAYKELTDLHK 669

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +  +        + + +  +   EL   L++   +A     T    + D+R   Q+
Sbjct: 670 A---NAAKDSEAQEAALSREMKAK--EELSAALEKAQEEARQQQETLAIQVGDLRLALQR 724

Query: 581 AL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           A  A  ++   L  +  E+++++ +   +   E +  + S    +  QI  +++ 
Sbjct: 725 AEQAAARKEDYLRHEISELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 778


>gi|329896051|ref|ZP_08271287.1| DNA repair protein RecN [gamma proteobacterium IMCC3088]
 gi|328922011|gb|EGG29375.1| DNA repair protein RecN [gamma proteobacterium IMCC3088]
          Length = 550

 Score = 44.1 bits (102), Expect = 0.067,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 92/333 (27%), Gaps = 28/333 (8%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVL----LSRGEDPDSFIRCYGKTAFEKLIVESL 379
           D   +R      ++     + G               +D     R        K  +  +
Sbjct: 51  DSSSVRYGADKAEISASFDLHGLAQAQAWLAKHHLDSDDDLVLRRIVTSEGRSKAYINGV 110

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY-YSQAIRDRLQQLFQK 438
           P          E           +  ++ K    HI D  +    Y   +R+ L   F++
Sbjct: 111 PCTAQQCNELGEFLVDIHGQHAHQSLMN-KKTHRHILDALIADTSYLHRVRE-LAHEFRE 168

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL---TLINHP 495
              E     +    N   +         +QS ++     +    +E  LL    TLI   
Sbjct: 169 VKKELDALTQGNSDNQEAKAFLEYQVEELQSVILSADELESLE-QEQDLLSQGETLIKQL 227

Query: 496 AILQEQYQELAD--------------IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           +      ++ +D                  +   + L S L      ++          L
Sbjct: 228 SEAAYHCEQQSDGLRQTIRLLESGLKSGLTSEAYELLNSALIQVDEARRDIERRSDKLEL 287

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY---KRFRLLSRQKEEI 598
                 E+ ++LD+    A       +     ++    +  AL    +R   L RQ   I
Sbjct: 288 NPERLVEITERLDKVYELARKHRTQPDQLAQKLQTYELELEALLGADERITELKRQLTHI 347

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +            ++ A    +  EVH Q+  +
Sbjct: 348 QAAYGGAAEALSGQRKAAAEHLQSEVHDQLQSL 380


>gi|330944253|ref|XP_003306340.1| hypothetical protein PTT_19470 [Pyrenophora teres f. teres 0-1]
 gi|311316190|gb|EFQ85573.1| hypothetical protein PTT_19470 [Pyrenophora teres f. teres 0-1]
          Length = 1555

 Score = 44.1 bits (102), Expect = 0.067,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 92/303 (30%), Gaps = 21/303 (6%)

Query: 354  SRGEDPDSFIRCY---GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
            + G D              A   +   +   +      E       T  +R       + 
Sbjct: 752  NDGTDKYQMGLTKIFFRAEAVIFVQSLARGYMTREKTEEARQVRAATTIQRVWRGSKDRK 811

Query: 411  CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
                I++  ++    +AI                   R  ++N R +      ++ +   
Sbjct: 812  RFLVIRNSLIK---FEAIAKGYLLRKNLLDKRLGDAARMIQRNWRKQRYIRAYKKEINDI 868

Query: 471  LVKGKL-SKKPSLREAALLLTLINHPAILQEQYQELADIRYDN-----NELQKLWSFLFS 524
            +   KL   + + RE  +L         +  + +        N      + + L S + +
Sbjct: 869  ITVQKLWRGRKARREYKVLRAESRDLKNISYKLENKVVELTQNLGTMREQNKSLKSQVEN 928

Query: 525  DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
               + K +           R      K+L  +   AG+ +A       + ++        
Sbjct: 929  YENQIKSYKE-------RSRTLENRQKELQAEANQAGITAAKLSQMEDEYKKLQTSYEES 981

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI--LHEVHIQIHQIESQEAMIEGFG 642
              + R L  +++E+   + + T   E  K    I+      +  Q+ +++ Q  +++  G
Sbjct: 982  NAKMRHLQEEEKELRATLKRTTEDLEQSKRKSNITETEKVSLRQQLAELQEQVEIMKRAG 1041

Query: 643  KMS 645
             +S
Sbjct: 1042 PIS 1044


>gi|301091690|ref|XP_002896024.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262095659|gb|EEY53711.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 635

 Score = 44.1 bits (102), Expect = 0.067,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 70/216 (32%), Gaps = 11/216 (5%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            LR +Y        +QL      + S       +    ++     + L++    +    +
Sbjct: 405 VLRDFYQHEAIQAFRQLENVVTQQLSESRLEELRLHLQKEFADKKEALVEHFKQEEAQLR 464

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
               RE   +  +            + A ++ D +E  +L   L     +      + I 
Sbjct: 465 AGMAREMETMQKM---------HEAKAARVKIDGSEAIRLREELNDQKRQNAKLQEKAIV 515

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEE 597
               ++        L  +V +  +       N  ++       +    ++ + L+ +  E
Sbjct: 516 LEHSQQDAINQKGVLAAKVEELEVVLRREMDNRTELVDTLALTIKTAEEKEKALNEKIAE 575

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++ ++ + T + E E    L   L + + +  +++ 
Sbjct: 576 LQLELGEKTFRIECE-LQELTHQLRKTNEEKEELQK 610


>gi|167933045|ref|ZP_02520132.1| DNA primase [candidate division TM7 single-cell isolate TM7b]
          Length = 107

 Score = 44.1 bits (102), Expect = 0.067,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DPD  I+      ++  I    P VD + ++  +N   +T   +          I++++
Sbjct: 9   KDPDELIQ-RDPKLWQGAIDAYEPAVDWILRQYYKNNDISTAAGKRAYTTAGLAVIHNLQ 67

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHS 444
           D   R +Y + + ++++   +    +  
Sbjct: 68  DPVERDHYLRKMAEKIETDIEVLRAKMK 95


>gi|73958851|ref|XP_862959.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 30 [Canis familiaris]
          Length = 1972

 Score = 44.1 bits (102), Expect = 0.067,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 877  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 936

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 937  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 996

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 997  LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1056

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1057 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1113

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1114 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1154


>gi|268567662|ref|XP_002647833.1| Hypothetical protein CBG23621 [Caenorhabditis briggsae]
 gi|187040937|emb|CAP20429.1| hypothetical protein CBG_23621 [Caenorhabditis briggsae AF16]
          Length = 1651

 Score = 44.1 bits (102), Expect = 0.067,   Method: Composition-based stats.
 Identities = 33/335 (9%), Positives = 93/335 (27%), Gaps = 26/335 (7%)

Query: 323  GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382
             +     +A  + D +        R     L +  D             ++L  +     
Sbjct: 1203 MEAIAGTSANVSYDALRELDQNRRRQLERELKKLRDTFEARIKDLTEGNKQLREQQKT-N 1261

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS---QAIRDRLQQLFQKY 439
             +  ++       +  ++   L  +     +  + +  +         +  +L    ++ 
Sbjct: 1262 QIEHEKLESKLQESETEKGILLNENSTLKCSVQELETEKNAIKATNSELHKKLGTSEERL 1321

Query: 440  ITEHSGYGRYWKKNARHRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
                    +  +K  + +++     ++         K  +     E  LL        + 
Sbjct: 1322 KDLQEKLEKARRKGEKLQEKLSNLEEQRKAGQKDSEKAVEHMLDLEKKLLEATTQKEKLQ 1381

Query: 499  QEQYQE-LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-------------ER 544
            ++  +       +   +  KL         E +    E   + L              E 
Sbjct: 1382 KDLIEAARVSEVFKKEQHSKLQQT--QRDKEDQKASLEAEIKNLQVRSSELTKNLVIAEE 1439

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
            G   L ++L    +         E  +  ++    + L   K    L +  +E+E +I +
Sbjct: 1440 GLENLQERLRGSEQQKTAVQKEKEDAVGKLQDLEGKILQCNKEKEQLQKTVKELEGKIQE 1499

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                 +      L + L  V  +  +++ +   +E
Sbjct: 1500 SVVSNK-----ELEARLQVVDSKNGKLQEENTRLE 1529


>gi|327286562|ref|XP_003227999.1| PREDICTED: cingulin-like [Anolis carolinensis]
          Length = 1134

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 29/309 (9%), Positives = 99/309 (32%), Gaps = 25/309 (8%)

Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
               ++ V     ED +   R     + ++  +E+         R  +     + +E A 
Sbjct: 596 HDRELDRVRQQYQEDMEQLRRNMEDVSQDQASLEAERQKINSVVRSLQRELEESSEETAH 655

Query: 404 LEIHLKNCINHIKDQ--------KLRYYY---SQAIRDRLQQLFQKYITEHSGYGRYWKK 452
            +   +     +++           R  +    + +RDR+  + Q+     +G     + 
Sbjct: 656 WKEMFQRNKEELRNAKQELMQVKVEREDFEEELKEMRDRVTSMRQELDQVRNGPENDGQA 715

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD- 511
           +A  ++ +    +L + +L K    +    RE  ++              +  A+++   
Sbjct: 716 SALRKELREVRDQLRELTLEKQAQDEVRRQREREVVSLKAALKEERSRHEEAAAEMKRQF 775

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
             + Q+L       F  +      +      ++     L++   +  D           I
Sbjct: 776 QQDAQQLRKDSEEAFKVKAALEGAKEATEQTKKAVETTLRETQEENDDLRRR-------I 828

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIA------QVTAKGEAEKTAILISILHEVH 625
           + +    ++       ++ +  + +E   ++       + + +  +++   L+     + 
Sbjct: 829 LSLETQLKEYRHFADNWQGIEARLKEKIAKMEGDRKQMEASLEEASDQEQELLLAKRSLE 888

Query: 626 IQIHQIESQ 634
            ++ + +  
Sbjct: 889 SRLEEAQRS 897


>gi|291405064|ref|XP_002719031.1| PREDICTED: myosin heavy chain [Oryctolagus cuniculus]
          Length = 1976

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 876  EEMGRKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 935

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 936  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 995

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              L+E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 996  KFLKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1049

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +        
Sbjct: 1050 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKIQLAKKE---EELQGALARGDDETLHK 1106

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1107 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1154


>gi|283954149|ref|ZP_06371674.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni 414]
 gi|283794428|gb|EFC33172.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni 414]
          Length = 473

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 2/122 (1%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L + I           E+    +     Q ++  + +   +        + +   
Sbjct: 25  LERAILSSCILSEEAYASIAGEIGPKDFSLKAHQDIFKAIMACSKQGAPISLSFLRKY-- 82

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           E+   +++ ++        L +   E     +++       L       +R   EI  +I
Sbjct: 83  EKIDEQIITEILATPSMIDLPAYVNELREKSIKRQLLSFAHLLPTRINENRAVSEIADEI 142

Query: 603 AQ 604
           ++
Sbjct: 143 SK 144


>gi|260892766|ref|YP_003238863.1| Replicative DNA helicase-like protein [Ammonifex degensii KC4]
 gi|260864907|gb|ACX52013.1| Replicative DNA helicase-like protein [Ammonifex degensii KC4]
          Length = 460

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 42/152 (27%), Gaps = 12/152 (7%)

Query: 483 REAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            E A+L  L           ++ L    + + E ++ +  L       +          +
Sbjct: 18  LERAVLAALARDEQAFYSYAEDYLVPEVFFDPENRRAFLELVEAHASGRPAP------EV 71

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                 +L   + +    A    A     +    +      ++      L  +  E ++ 
Sbjct: 72  EGEPAPDLAAAVGKLCDLAQRRKAA--LVMEKFWRDLGSGKSVRDALAELMERAAEAQQA 129

Query: 602 IAQVTA---KGEAEKTAILISILHEVHIQIHQ 630
           +  +     +  AE     +  L E   Q  +
Sbjct: 130 VRALAPGEVRTAAELLREAVERLREQKRQKEE 161


>gi|240123146|ref|ZP_04736102.1| replicative DNA helicase [Neisseria gonorrhoeae PID332]
          Length = 462

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 14/178 (7%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                 +    L       E ++L   ++ +PA        ++   +  +E + ++  + 
Sbjct: 2   PPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIA 60

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               E +      + + L         ++L+       L +           + Y + + 
Sbjct: 61  KLINESRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV- 113

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
              R R + RQ  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 114 ---RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQGF 166


>gi|212542011|ref|XP_002151160.1| DNA repair protein Rad50 [Penicillium marneffei ATCC 18224]
 gi|210066067|gb|EEA20160.1| DNA repair protein Rad50 [Penicillium marneffei ATCC 18224]
          Length = 1329

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 47/438 (10%), Positives = 124/438 (28%), Gaps = 46/438 (10%)

Query: 250  NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309
                  + +     + +    +    + +   DV           +        +     
Sbjct: 654  CLKKIRDAIDDDPTEYLDILQTRQNHMDQTRKDVEQFAGMHGYFNMCLDALDQKKMCRTC 713

Query: 310  LWKLSPRIVL----------------CFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            +        +                  D D       Y+   +V        R+    +
Sbjct: 714  MRPFKNETEMRTFKNRLEGLIKKNFSSSDEDLKQAEEDYENARMVNTDYDTWLRLTETAI 773

Query: 354  SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               E  +   +   +   +KL      + +   K+        T      ++  +K+  +
Sbjct: 774  PELEKNEEQFQGQKEEILKKLESHDTTVDERAEKKREIESLSRTVTSIVRIDGEIKSLRS 833

Query: 414  HIKDQKLRY------YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
             I +              + I++ +  + +K         +   +  + RD    ++  +
Sbjct: 834  QIAEVLSEQPQGDFSRVLEDIQNDIAAIGEKSRAIKLTISKLSSEKDQSRDDLNKAELAL 893

Query: 468  QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
            +        +     ++  LL  +  +     +Q + +     D ++L+           
Sbjct: 894  RDVQGSLANASHELEKKTGLLARVEEYKKSNAKQRESIEKADRDIDQLEP------EIAK 947

Query: 528  EQKYFLPEEIHQRLCERGFGELLKQLDRQVR-----DAGLWSATTEANIVDVRQGYQQAL 582
             Q             ER   + L +L  +V      +  + S         + +  ++  
Sbjct: 948  AQAKLDDISRRAEAKERELQQALTRLSDRVNQLNLANDEIKSYIDRGGPEQLNKSRKELE 1007

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAK-----------GEAEKTAILISILHEVHIQIHQI 631
             + +  + L  Q+ E  ++I +++A+            +         +L EV  +I Q+
Sbjct: 1008 NIQQEIKKLEEQQSETTREINKISAQLKDSDNTRRQYSDNISYRQSCRLLEEVQREIQQL 1067

Query: 632  ESQEAMIE--GFGKMSGR 647
            E Q A I+   F + S R
Sbjct: 1068 EEQNAEIDRSRFKEESER 1085


>gi|5032285|ref|NP_003998.1| dystrophin Dp427l isoform [Homo sapiens]
 gi|5032315|ref|NP_004001.1| dystrophin Dp427p2 isoform [Homo sapiens]
          Length = 3562

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 2406 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 2461

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 2462 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 2521

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2522 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 2580

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 2581 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 2640

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2641 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 2700

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2701 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 2759

Query: 550  -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 2760 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 2819

Query: 609  GEA 611
             + 
Sbjct: 2820 TDE 2822



 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L +  +K   +     +  K        K  S R   ++L+  +      L E  +   
Sbjct: 1578 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 1637

Query: 491  -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                  I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 1638 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 1697

Query: 546  ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                 ELL++ D   +         E  I                        +   Q  
Sbjct: 1698 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 1757

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1758 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 1809


>gi|158186663|ref|NP_446123.2| TATA element modulatory factor 1 [Rattus norvegicus]
 gi|149036804|gb|EDL91422.1| rCG56136, isoform CRA_a [Rattus norvegicus]
          Length = 1093

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 66/175 (37%), Gaps = 7/175 (4%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +   Q      KL+     +E  L    ++   + ++     A +   ++  ++L  
Sbjct: 613 GKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMNELEEKSRSTQAAL---DSAYRELTD 669

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
              ++  +        + + +  +   EL   L++   +A     T    + D+R   Q+
Sbjct: 670 LHKANAAKDSEVQEAALRREMKAK--EELSGALEKAQEEARQQQETLALQVGDLRLALQR 727

Query: 581 AL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           A  A  ++   L  +  E+++++ +   +   E +  + S    +  QI  +++ 
Sbjct: 728 AEQAAARKEDYLRHEISELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 781


>gi|47938109|gb|AAH71583.1| DCTN1 protein [Homo sapiens]
          Length = 1139

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 106 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 165

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 166 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 225

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 226 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 285

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 286 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 345

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 346 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTANLQDVNRELTNQQE 405

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 406 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 461



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 90  VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 149

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 150 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 209

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 210 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 263

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 264 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 307



 Score = 37.2 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 82  EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 141

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 142 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 196


>gi|73974724|ref|XP_857335.1| PREDICTED: similar to plectin 1 isoform 1 isoform 8 [Canis
            familiaris]
          Length = 4544

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 62/211 (29%), Gaps = 23/211 (10%)

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
             E     R   + A  + ++     + +      +  ++ +  E  L    +        
Sbjct: 2139 AEQEAVRRAQAEQAALKQKQVADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ------- 2191

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              +        + ELQ+L + +     ++     E    R+      +L  +++ + R  
Sbjct: 2192 LEETDHQKSILDEELQRLKAEVTEAARQRNQVEEELFSVRVQMEELSKLKARIEAENRAL 2251

Query: 561  GLWSATT-------------EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQ 604
             L                  +      R       A   R      L++Q+   EK + +
Sbjct: 2252 ILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKE 2311

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                 +        + L +   ++ Q ++++
Sbjct: 2312 KMQAVQEATRLKAEAELLQQQKELAQEQARQ 2342



 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 19/274 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       +RE    +    +  AEL          +  + 
Sbjct: 1710 QELIRLRAETEQGEQQRQLLEEELARLQREAAAATHKRQELEAELAKVRAEMEVLLASKA 1769

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +   +          +     ++    ++L +    + +   +
Sbjct: 1770 RAEEESRSTSEKSKQRLEAEASRFRELAEEAARLRALAEETKRQRQLAEEDAARQRAEAE 1829

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------FLFSDFVEQKYFL 533
              L E   L  +     +  E    L +   +N  L++L            +   Q    
Sbjct: 1830 RVLAEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKAD 1887

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             EE   +L +    EL                  E  +   RQ  ++ LAL   F   + 
Sbjct: 1888 IEERLAQLRKASENEL-----------ERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 1936

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             K E+E ++ ++ +  E    +   + L     +
Sbjct: 1937 GKAELELELGRIRSNAEDTLRSKEQAELEATRQR 1970



 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 84/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+        +   +   +     + + +      Q  ++ L+++ +  + + 
Sbjct: 1204 RQLRYYRESADPLGTWLQDAKQRQERIQAVPLANSQAVREQLQQEKELLEEIERYGEKVD 1263

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E     + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1264 ECQQLAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1320

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1321 SEL---TTLTSQYIKFIRETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1377

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTA----- 615
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1378 QAKAQAEREAEELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKARQV 1437

Query: 616  --------ILISILHEVHIQIHQIESQEAMIEG 640
                     +   +  V +Q+   E Q    EG
Sbjct: 1438 EAAERSRVRIEEEIRVVRLQLEATERQRGGAEG 1470



 Score = 37.9 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1675 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLVAEQELIRLRAETEQGEQQRQLLEEELA 1734

Query: 604  QVTAKGEAE--KTAILISILHEVHIQIHQIESQEAMIE 639
            ++  +  A   K   L + L +V  ++  + + +A  E
Sbjct: 1735 RLQREAAAATHKRQELEAELAKVRAEMEVLLASKARAE 1772



 Score = 37.2 bits (84), Expect = 8.9,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 88/282 (31%), Gaps = 20/282 (7%)

Query: 373  KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
            ++ +E L  +    + E         D            +  + ++  R   +     RL
Sbjct: 2231 RVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARL 2290

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-----AAL 487
            +QL ++ + +         K      Q+    +     L + K   +   R+       +
Sbjct: 2291 RQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARQLQEDKEQM 2350

Query: 488  LLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCER 544
               L       Q   +     + + + E ++L   +      Q       +   ++  E 
Sbjct: 2351 AQQLAQETQGFQRTLEAERQRQLEMSAEAERLKLRVAEMSRAQARAEEDAQRFRKQAEEI 2410

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ--- 601
            G      +L  Q +   + +   +    D       A  L      L R+KE+++++   
Sbjct: 2411 GEKLHRTELATQEKVTLVHTLEIQRQQSD-----HDAERLRAAITELEREKEKLQEEATL 2465

Query: 602  IAQVTAKGEAEKTAILISILHEVHI----QIHQIESQEAMIE 639
            + Q + + +  +   L+     +      +  ++  +E  IE
Sbjct: 2466 LQQKSEEMQVVQQEQLLQETRALQESFLSEKDRLLQRERFIE 2507


>gi|73974712|ref|XP_848799.1| PREDICTED: similar to plectin 1 isoform 1 isoform 2 [Canis
            familiaris]
          Length = 4570

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 62/211 (29%), Gaps = 23/211 (10%)

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
             E     R   + A  + ++     + +      +  ++ +  E  L    +        
Sbjct: 2165 AEQEAVRRAQAEQAALKQKQVADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ------- 2217

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              +        + ELQ+L + +     ++     E    R+      +L  +++ + R  
Sbjct: 2218 LEETDHQKSILDEELQRLKAEVTEAARQRNQVEEELFSVRVQMEELSKLKARIEAENRAL 2277

Query: 561  GLWSATT-------------EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQ 604
             L                  +      R       A   R      L++Q+   EK + +
Sbjct: 2278 ILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKE 2337

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                 +        + L +   ++ Q ++++
Sbjct: 2338 KMQAVQEATRLKAEAELLQQQKELAQEQARQ 2368



 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 19/274 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       +RE    +    +  AEL          +  + 
Sbjct: 1736 QELIRLRAETEQGEQQRQLLEEELARLQREAAAATHKRQELEAELAKVRAEMEVLLASKA 1795

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +   +          +     ++    ++L +    + +   +
Sbjct: 1796 RAEEESRSTSEKSKQRLEAEASRFRELAEEAARLRALAEETKRQRQLAEEDAARQRAEAE 1855

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------FLFSDFVEQKYFL 533
              L E   L  +     +  E    L +   +N  L++L            +   Q    
Sbjct: 1856 RVLAEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKAD 1913

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             EE   +L +    EL                  E  +   RQ  ++ LAL   F   + 
Sbjct: 1914 IEERLAQLRKASENEL-----------ERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 1962

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             K E+E ++ ++ +  E    +   + L     +
Sbjct: 1963 GKAELELELGRIRSNAEDTLRSKEQAELEATRQR 1996



 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 84/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+        +   +   +     + + +      Q  ++ L+++ +  + + 
Sbjct: 1230 RQLRYYRESADPLGTWLQDAKQRQERIQAVPLANSQAVREQLQQEKELLEEIERYGEKVD 1289

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E     + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1290 ECQQLAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1346

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1347 SEL---TTLTSQYIKFIRETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1403

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTA----- 615
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1404 QAKAQAEREAEELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKARQV 1463

Query: 616  --------ILISILHEVHIQIHQIESQEAMIEG 640
                     +   +  V +Q+   E Q    EG
Sbjct: 1464 EAAERSRVRIEEEIRVVRLQLEATERQRGGAEG 1496



 Score = 37.9 bits (86), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1701 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLVAEQELIRLRAETEQGEQQRQLLEEELA 1760

Query: 604  QVTAKGEAE--KTAILISILHEVHIQIHQIESQEAMIE 639
            ++  +  A   K   L + L +V  ++  + + +A  E
Sbjct: 1761 RLQREAAAATHKRQELEAELAKVRAEMEVLLASKARAE 1798



 Score = 37.2 bits (84), Expect = 8.9,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 88/282 (31%), Gaps = 20/282 (7%)

Query: 373  KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
            ++ +E L  +    + E         D            +  + ++  R   +     RL
Sbjct: 2257 RVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARL 2316

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-----AAL 487
            +QL ++ + +         K      Q+    +     L + K   +   R+       +
Sbjct: 2317 RQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARQLQEDKEQM 2376

Query: 488  LLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCER 544
               L       Q   +     + + + E ++L   +      Q       +   ++  E 
Sbjct: 2377 AQQLAQETQGFQRTLEAERQRQLEMSAEAERLKLRVAEMSRAQARAEEDAQRFRKQAEEI 2436

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ--- 601
            G      +L  Q +   + +   +    D       A  L      L R+KE+++++   
Sbjct: 2437 GEKLHRTELATQEKVTLVHTLEIQRQQSD-----HDAERLRAAITELEREKEKLQEEATL 2491

Query: 602  IAQVTAKGEAEKTAILISILHEVHI----QIHQIESQEAMIE 639
            + Q + + +  +   L+     +      +  ++  +E  IE
Sbjct: 2492 LQQKSEEMQVVQQEQLLQETRALQESFLSEKDRLLQRERFIE 2533


>gi|73958847|ref|XP_862910.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 28 [Canis familiaris]
          Length = 1964

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 869  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 928

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 929  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 988

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 989  LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1048

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1049 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1105

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1106 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1146


>gi|73958813|ref|XP_862507.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 12 [Canis familiaris]
          Length = 1980

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 885  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 944

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 945  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1004

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1005 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1064

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1065 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1121

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1122 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1162


>gi|312964279|ref|ZP_07778583.1| replicative DNA helicase [Escherichia coli 2362-75]
 gi|312290992|gb|EFR18866.1| replicative DNA helicase [Escherichia coli 2362-75]
          Length = 431

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 39/121 (32%), Gaps = 10/121 (8%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
             E    +    +  +  ++++S +       K      + + L + G      +L+R  
Sbjct: 7   WDEVADRIVADDFYTSAHREIFSEMERLLSHGKPIDLITLAEALEQNG------KLERAG 60

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             A L   +           Y   +    R R + R+   +  +IA+     +   +  L
Sbjct: 61  GFAYLAEMSKNTPSAANICAYADIV----RERAVVREMISVANEIAEAGYAQDGRGSNEL 116

Query: 618 I 618
           +
Sbjct: 117 L 117


>gi|218197115|gb|EEC79542.1| hypothetical protein OsI_20656 [Oryza sativa Indica Group]
          Length = 913

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + I   +              + + +      
Sbjct: 393 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVEHHALE------KEKDKASKARLVE 446

Query: 567 TEANIVDVRQGYQQALALYKRFRL-------LSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
            +  + D+R   Q     Y++ +        L +++EE++  + +   + +  + A L  
Sbjct: 447 VKKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAERRMDLARVADLKY 506

Query: 619 SILHEVHIQIHQIESQ 634
             L E+ + I ++ES+
Sbjct: 507 GALQEIDVAIAKLESE 522


>gi|205277396|ref|NP_001128513.1| dynactin subunit 1 isoform 4 [Homo sapiens]
 gi|119620090|gb|EAW99684.1| dynactin 1 (p150, glued homolog, Drosophila), isoform CRA_a [Homo
           sapiens]
          Length = 1139

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 106 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 165

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 166 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 225

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 226 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 285

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 286 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 345

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 346 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 405

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 406 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 461



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 90  VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 149

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 150 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 209

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 210 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 263

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 264 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 307



 Score = 37.2 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 82  EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 141

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 142 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 196


>gi|114657227|ref|XP_510437.2| PREDICTED: cingulin-like 1 [Pan troglodytes]
          Length = 1302

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 95/290 (32%), Gaps = 10/290 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y +    +L      L +   + E    +     +   L           +D+ 
Sbjct: 972  QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEA 1031

Query: 420  L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L  R    Q ++D   +L  K   +        +   +    +   +    +S +  +  
Sbjct: 1032 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERI 1091

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLP 534
             +   +   +   L+   A  Q+   +   +   N +L+     L   +    E      
Sbjct: 1092 SRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQM 1151

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLL 591
            E     L +R   E   + + Q+ +  L     E  +    +      Q   L  R + +
Sbjct: 1152 EARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAM 1211

Query: 592  SRQKEEIEKQIAQVTAKGEA-EKTAILISILHE-VHIQIHQIESQEAMIE 639
             RQ EE E++I ++ +  +  ++       ++E +  Q++ ++    + +
Sbjct: 1212 KRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLRLKK 1261



 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 87/252 (34%), Gaps = 19/252 (7%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           +++++L I +      ++ +       +  R+R++   ++  ++H+          +  +
Sbjct: 614 EQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLE 673

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +     R     L + K+ ++    E   L        + +   +  +  R ++ E   L
Sbjct: 674 ESEGELRKNLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSAKRSEDREKGAL 728

Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLW----SATTEAN 570
              L     + +  L  +  Q    R  ER    L   L  +V              +A 
Sbjct: 729 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 788

Query: 571 IVDVRQGYQQA------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           +  +R+  ++A      LA         +   E+  ++ Q   +    ++  L   + ++
Sbjct: 789 LQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQL 848

Query: 625 HIQIHQIESQEA 636
             QI  ++  EA
Sbjct: 849 QRQIEDLKGDEA 860



 Score = 37.2 bits (84), Expect = 8.1,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 102/331 (30%), Gaps = 13/331 (3%)

Query: 306  QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
            ++R L      +    D           A+   L       +   +     ED     R 
Sbjct: 699  EIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLR-KRE 757

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK--NCINHIKDQKLRYY 423
               TA +  + E +   D    +  E         R  +E   K    +    +   +  
Sbjct: 758  RELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQ 817

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                +R +L Q   + +   S          + + +            +K    +   L 
Sbjct: 818  AGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKNYEGEIRQLE 877

Query: 484  EAAL------LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            EA +         +    A+  E      ++     E ++L   L  +  +++     + 
Sbjct: 878  EALVHARKEEKEAVSARSALENELEAAQGNLSRTTQEQKQLSEKLKEESEQKEQLRRLKN 937

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                     G+ +++L +++ D    S T+   + +    Y++     +    + RQ +E
Sbjct: 938  EMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKE--KNRRELAEMQRQLKE 995

Query: 598  --IEKQIAQVTAKGEAEKTAILISILHEVHI 626
              +E + +++TA    ++  ++   L +   
Sbjct: 996  KTLEAEKSRLTAMKMQDEMRLMEEELRDYQR 1026


>gi|73958849|ref|XP_862931.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 29 [Canis familiaris]
          Length = 1979

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 884  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 943

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 944  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1003

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1004 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1063

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1064 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1120

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1121 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1161


>gi|73958843|ref|XP_862866.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 26 [Canis familiaris]
          Length = 1966

 Score = 44.1 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 871  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 930

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 931  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 990

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 991  LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1050

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1051 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1107

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1108 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1148


>gi|322385040|ref|ZP_08058690.1| cell division protein Smc [Streptococcus cristatus ATCC 51100]
 gi|321270950|gb|EFX53860.1| cell division protein Smc [Streptococcus cristatus ATCC 51100]
          Length = 1178

 Score = 44.1 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 76/260 (29%), Gaps = 25/260 (9%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYY-----SQAIRDRLQQLFQKYIT--------EHSG 445
           +   E            +D+  R         Q +  RL       +         E   
Sbjct: 245 EADLESIKQELAAYYTKRDELERENQEIKVKRQEVNQRLSDDQASLLELTRLISDLERQI 304

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN---HPAILQEQY 502
                + +     +    +RL        +L+   S +EA L    +    +   + +  
Sbjct: 305 DLAKLESSQAASSRLENEERLAGLREKSQQLTADISSKEAHLADLAVQLTENQEAMSQLE 364

Query: 503 QELADI-RYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLKQLDRQVRD 559
            ELAD     +  ++ L         E+         +  RL         KQ       
Sbjct: 365 AELADFSDDPDQLIENLRDRYVKLMQEEADLSNDLTSLENRLENERSQAASKQAKFSKLQ 424

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
           A L +   E           Q        R L  Q +E + Q+ ++ A     +   + +
Sbjct: 425 ADLKAGRAEEAARQAELEEAQT-----ALRALLEQYQEQQGQVEKL-ATAYQNEQTSMFA 478

Query: 620 ILHEVHIQIHQIESQEAMIE 639
           +L ++  +  +  S EA+++
Sbjct: 479 LLDDLKNKKARAASLEAILK 498



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 71/187 (37%), Gaps = 12/187 (6%)

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
           RD      +     +   K  ++ ++ E A    ++ +    +E   +LA      + L 
Sbjct: 135 RDSFSIISQGKVEEIFNSKPEERRAIFEEA--AGVLKYKTRRKETESKLAQ---TQDNLD 189

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR- 575
           +L   ++    + K    +    +       +  ++L   V  A + +  T+    +   
Sbjct: 190 RLEDIIYELDSQVKPLEKQAETAK-RFLELDQERQELYLDVLVAQIKANKTDLTAAEADL 248

Query: 576 QGYQQALALY-KRFRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHEVHIQ--IHQ 630
           +  +Q LA Y  +   L R+ +EI+ +  +V      +      L  ++ ++  Q  + +
Sbjct: 249 ESIKQELAAYYTKRDELERENQEIKVKRQEVNQRLSDDQASLLELTRLISDLERQIDLAK 308

Query: 631 IESQEAM 637
           +ES +A 
Sbjct: 309 LESSQAA 315


>gi|220903854|ref|YP_002479166.1| ATP-dependent chaperone ClpB [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868153|gb|ACL48488.1| ATP-dependent chaperone ClpB [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 868

 Score = 44.1 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 78/225 (34%), Gaps = 26/225 (11%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL-LTLINH 494
           ++KYI +     R ++           +  +++    + ++     + ++A++   +++H
Sbjct: 324 YRKYIEKDPALERRFQPVMVEEPTVEDTISILRGLKERFEVHHGVRISDSAIVEAVMLSH 383

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I   Q  +   I   +     + + + S   +      + +   +      E L++  
Sbjct: 384 RYITDRQLPD-KAIDLIDEAAALIRTEIDSLPADLDEANRKVMQLEIE----REALRRET 438

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS---RQKEEIEKQ-------IAQ 604
                  L     E   + + Q       L K++        Q  EI++Q       I Q
Sbjct: 439 DAASRERLEKLENELADLRIEQA-----DLRKQWESEKGSINQVREIKEQIEQTKLAIEQ 493

Query: 605 VTAKGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
                +  K A L  S L E+  ++ + E+     +G G    RL
Sbjct: 494 AERAYDLNKAAELKYSKLLELEKKLAEAENS----DGSGAEGPRL 534


>gi|194758655|ref|XP_001961577.1| GF14866 [Drosophila ananassae]
 gi|190615274|gb|EDV30798.1| GF14866 [Drosophila ananassae]
          Length = 1729

 Score = 44.1 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 88/290 (30%), Gaps = 20/290 (6%)

Query: 358  DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
            D  +            L +    L+  +   E            A      +     +  
Sbjct: 943  DDAAVFVTMSDDENASLELRYQALLSDMSWNERAEALATLQAYVARHPGRAQELHQKLSS 1002

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
               R    Q    + Q    +   + +   +      +    +    +  Q  L++ K  
Sbjct: 1003 PSRRRS-LQETLKKYQAKQARAQQKRNLLQQEKAAKLQQLFARVEDVKAAQKQLIEDKRQ 1061

Query: 478  KKPSLREAAL------LLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQK 530
            K     + A       L  +I       ++ ++L +I +  N E Q     L     E +
Sbjct: 1062 KMEGRHQRAAENRVQYLRQII---EKAHDEEKKLKEINFIKNIEAQNKRLDLLESSKETE 1118

Query: 531  YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
              L +     L +    ++ ++L ++        A  +  ++ + +  +  L   +R   
Sbjct: 1119 GRLLD-----LEQERQKKVEEKLAKEAAVERRRQALEKERLLKLEKMNETRLEKEQRIGK 1173

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAILI-SILH---EVHIQIHQIESQEA 636
               QKE   + +A+  A+   E+   L         E+  +I Q + + A
Sbjct: 1174 RQEQKERERQALAREKARDREERLLALQVQHKQTTEELQRKILQKQMESA 1223


>gi|73974716|ref|XP_857167.1| PREDICTED: similar to plectin 1 isoform 1 isoform 4 [Canis
            familiaris]
          Length = 4587

 Score = 44.1 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 62/211 (29%), Gaps = 23/211 (10%)

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
             E     R   + A  + ++     + +      +  ++ +  E  L    +        
Sbjct: 2182 AEQEAVRRAQAEQAALKQKQVADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ------- 2234

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              +        + ELQ+L + +     ++     E    R+      +L  +++ + R  
Sbjct: 2235 LEETDHQKSILDEELQRLKAEVTEAARQRNQVEEELFSVRVQMEELSKLKARIEAENRAL 2294

Query: 561  GLWSATT-------------EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQ 604
             L                  +      R       A   R      L++Q+   EK + +
Sbjct: 2295 ILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKE 2354

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                 +        + L +   ++ Q ++++
Sbjct: 2355 KMQAVQEATRLKAEAELLQQQKELAQEQARQ 2385



 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 19/274 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       +RE    +    +  AEL          +  + 
Sbjct: 1753 QELIRLRAETEQGEQQRQLLEEELARLQREAAAATHKRQELEAELAKVRAEMEVLLASKA 1812

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +   +          +     ++    ++L +    + +   +
Sbjct: 1813 RAEEESRSTSEKSKQRLEAEASRFRELAEEAARLRALAEETKRQRQLAEEDAARQRAEAE 1872

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------FLFSDFVEQKYFL 533
              L E   L  +     +  E    L +   +N  L++L            +   Q    
Sbjct: 1873 RVLAEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKAD 1930

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             EE   +L +    EL                  E  +   RQ  ++ LAL   F   + 
Sbjct: 1931 IEERLAQLRKASENEL-----------ERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 1979

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             K E+E ++ ++ +  E    +   + L     +
Sbjct: 1980 GKAELELELGRIRSNAEDTLRSKEQAELEATRQR 2013



 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 84/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+        +   +   +     + + +      Q  ++ L+++ +  + + 
Sbjct: 1247 RQLRYYRESADPLGTWLQDAKQRQERIQAVPLANSQAVREQLQQEKELLEEIERYGEKVD 1306

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E     + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1307 ECQQLAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1363

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1364 SEL---TTLTSQYIKFIRETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1420

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTA----- 615
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1421 QAKAQAEREAEELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKARQV 1480

Query: 616  --------ILISILHEVHIQIHQIESQEAMIEG 640
                     +   +  V +Q+   E Q    EG
Sbjct: 1481 EAAERSRVRIEEEIRVVRLQLEATERQRGGAEG 1513



 Score = 37.9 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1718 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLVAEQELIRLRAETEQGEQQRQLLEEELA 1777

Query: 604  QVTAKGEAE--KTAILISILHEVHIQIHQIESQEAMIE 639
            ++  +  A   K   L + L +V  ++  + + +A  E
Sbjct: 1778 RLQREAAAATHKRQELEAELAKVRAEMEVLLASKARAE 1815



 Score = 37.2 bits (84), Expect = 8.9,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 88/282 (31%), Gaps = 20/282 (7%)

Query: 373  KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
            ++ +E L  +    + E         D            +  + ++  R   +     RL
Sbjct: 2274 RVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARL 2333

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-----AAL 487
            +QL ++ + +         K      Q+    +     L + K   +   R+       +
Sbjct: 2334 RQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARQLQEDKEQM 2393

Query: 488  LLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCER 544
               L       Q   +     + + + E ++L   +      Q       +   ++  E 
Sbjct: 2394 AQQLAQETQGFQRTLEAERQRQLEMSAEAERLKLRVAEMSRAQARAEEDAQRFRKQAEEI 2453

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ--- 601
            G      +L  Q +   + +   +    D       A  L      L R+KE+++++   
Sbjct: 2454 GEKLHRTELATQEKVTLVHTLEIQRQQSD-----HDAERLRAAITELEREKEKLQEEATL 2508

Query: 602  IAQVTAKGEAEKTAILISILHEVHI----QIHQIESQEAMIE 639
            + Q + + +  +   L+     +      +  ++  +E  IE
Sbjct: 2509 LQQKSEEMQVVQQEQLLQETRALQESFLSEKDRLLQRERFIE 2550


>gi|73974718|ref|XP_857213.1| PREDICTED: similar to plectin 1 isoform 1 isoform 5 [Canis
            familiaris]
          Length = 4549

 Score = 44.1 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 62/211 (29%), Gaps = 23/211 (10%)

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
             E     R   + A  + ++     + +      +  ++ +  E  L    +        
Sbjct: 2144 AEQEAVRRAQAEQAALKQKQVADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ------- 2196

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              +        + ELQ+L + +     ++     E    R+      +L  +++ + R  
Sbjct: 2197 LEETDHQKSILDEELQRLKAEVTEAARQRNQVEEELFSVRVQMEELSKLKARIEAENRAL 2256

Query: 561  GLWSATT-------------EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQ 604
             L                  +      R       A   R      L++Q+   EK + +
Sbjct: 2257 ILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKE 2316

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                 +        + L +   ++ Q ++++
Sbjct: 2317 KMQAVQEATRLKAEAELLQQQKELAQEQARQ 2347



 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 19/274 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       +RE    +    +  AEL          +  + 
Sbjct: 1715 QELIRLRAETEQGEQQRQLLEEELARLQREAAAATHKRQELEAELAKVRAEMEVLLASKA 1774

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +   +          +     ++    ++L +    + +   +
Sbjct: 1775 RAEEESRSTSEKSKQRLEAEASRFRELAEEAARLRALAEETKRQRQLAEEDAARQRAEAE 1834

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------FLFSDFVEQKYFL 533
              L E   L  +     +  E    L +   +N  L++L            +   Q    
Sbjct: 1835 RVLAEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKAD 1892

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             EE   +L +    EL                  E  +   RQ  ++ LAL   F   + 
Sbjct: 1893 IEERLAQLRKASENEL-----------ERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 1941

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             K E+E ++ ++ +  E    +   + L     +
Sbjct: 1942 GKAELELELGRIRSNAEDTLRSKEQAELEATRQR 1975



 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 84/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+        +   +   +     + + +      Q  ++ L+++ +  + + 
Sbjct: 1209 RQLRYYRESADPLGTWLQDAKQRQERIQAVPLANSQAVREQLQQEKELLEEIERYGEKVD 1268

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E     + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1269 ECQQLAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1325

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1326 SEL---TTLTSQYIKFIRETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1382

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTA----- 615
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1383 QAKAQAEREAEELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKARQV 1442

Query: 616  --------ILISILHEVHIQIHQIESQEAMIEG 640
                     +   +  V +Q+   E Q    EG
Sbjct: 1443 EAAERSRVRIEEEIRVVRLQLEATERQRGGAEG 1475



 Score = 37.9 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1680 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLVAEQELIRLRAETEQGEQQRQLLEEELA 1739

Query: 604  QVTAKGEAE--KTAILISILHEVHIQIHQIESQEAMIE 639
            ++  +  A   K   L + L +V  ++  + + +A  E
Sbjct: 1740 RLQREAAAATHKRQELEAELAKVRAEMEVLLASKARAE 1777



 Score = 37.2 bits (84), Expect = 8.9,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 88/282 (31%), Gaps = 20/282 (7%)

Query: 373  KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
            ++ +E L  +    + E         D            +  + ++  R   +     RL
Sbjct: 2236 RVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARL 2295

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-----AAL 487
            +QL ++ + +         K      Q+    +     L + K   +   R+       +
Sbjct: 2296 RQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARQLQEDKEQM 2355

Query: 488  LLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCER 544
               L       Q   +     + + + E ++L   +      Q       +   ++  E 
Sbjct: 2356 AQQLAQETQGFQRTLEAERQRQLEMSAEAERLKLRVAEMSRAQARAEEDAQRFRKQAEEI 2415

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ--- 601
            G      +L  Q +   + +   +    D       A  L      L R+KE+++++   
Sbjct: 2416 GEKLHRTELATQEKVTLVHTLEIQRQQSD-----HDAERLRAAITELEREKEKLQEEATL 2470

Query: 602  IAQVTAKGEAEKTAILISILHEVHI----QIHQIESQEAMIE 639
            + Q + + +  +   L+     +      +  ++  +E  IE
Sbjct: 2471 LQQKSEEMQVVQQEQLLQETRALQESFLSEKDRLLQRERFIE 2512


>gi|73960799|ref|XP_863624.1| PREDICTED: similar to CDC42-binding protein kinase alpha isoform B
           isoform 7 [Canis familiaris]
          Length = 1781

 Score = 44.1 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 49/124 (39%), Gaps = 15/124 (12%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQ 579
                        +    L  +   E ++ L +Q+R++       E       ++   ++
Sbjct: 472 LQYSTADGPLTASK---DLEIKTLKEEIENLRKQIRESSHLEQQLEEANSVRRELDDAFR 528

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQ 630
           Q  A  K+ R L +++EE+ K++ Q + + + +   +          +    E++ ++ +
Sbjct: 529 QIKAYEKQIRTLQQEREELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTE 588

Query: 631 IESQ 634
           + +Q
Sbjct: 589 LHTQ 592


>gi|288869749|ref|ZP_06409488.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
 gi|288861449|gb|EFC93747.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
          Length = 354

 Score = 44.1 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 103/321 (32%), Gaps = 7/321 (2%)

Query: 318 VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
              +D  D  L        +     +      +   S   D D   + Y +  F K   +
Sbjct: 8   YCEYDSYDDYLIEEQYMDKIEEPFDLEQEYDKWDDYSDCIDSDLEYKEYQQEQFRK--ED 65

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           S+      ++        +  D      +   +  +++  +     Y    +  +    +
Sbjct: 66  SIEGPMSCFEHGYYMDESSNSDYDERSFMEEYDFEDNLTFEMESEIYGSDFKSEMDDYGE 125

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
           +   +        +       Q    +R ++   +K     +  +RE  L     +   I
Sbjct: 126 EEYYQKQIAEHERQIREDELKQIAEHERQIREDELKQIAEHERQIREDELKQIAEHERQI 185

Query: 498 LQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            +++ +++A+       +EL+++         E +     E  +++ E    + + + +R
Sbjct: 186 REDELKQIAEHERQIREDELKQIAEH-ERQIREDELKQIAEHERQIREDELKQ-IAEHER 243

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           Q+R+  L         +   +  Q A    +      +Q  E E+QI +   K  AE   
Sbjct: 244 QIREDELKQIAEHERQIREDELKQIAEHERQIREDELKQIAEHERQIREDELKQIAEHER 303

Query: 616 ILIS-ILHEVHIQIHQIESQE 635
            +    L ++     QI   E
Sbjct: 304 QIREDELKQIAEHERQIREDE 324


>gi|189183244|ref|YP_001937029.1| putative conjugative transfer protein TraI [Orientia tsutsugamushi
           str. Ikeda]
 gi|189180015|dbj|BAG39795.1| putative conjugative transfer protein TraI [Orientia tsutsugamushi
           str. Ikeda]
          Length = 715

 Score = 44.1 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 108/356 (30%), Gaps = 30/356 (8%)

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-LPVVDPKIEKKEKIQTDLI 118
           G +Y FS   KGD LS +     CSF E+ + L ++ G+  +     +  K +  Q    
Sbjct: 162 GKWYDFSTGQKGDLLSLVQRERVCSFFEAREYLKSMVGMSNISQRYQRPPKTDDSQQ--- 218

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
                    +    ++ +  ++    +                  +    ++++L  +G 
Sbjct: 219 ---------YTQQSESVKIAKVQNLYERSSRIHGYEIDTSPSAEVE---IVKKYLENRGI 266

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           + +K   +  L       T             R+S+G++              K   S  
Sbjct: 267 TFDKSTASSDLKASILFDTQTRENYPAFTAFARNSKGEITGVQA-VYLNSAGDKANISIN 325

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
              F K +  +    A              N  +  I+ EG    LSL Q+G++  + + 
Sbjct: 326 RRSFGKIRGSF-ITIAKRNA----------NDPNITIIAEGAETALSLQQSGIEGNIIAS 374

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
                            +I++  D D          I       + G     V      D
Sbjct: 375 AGISNLTNYSPF--PGEKIIIAADNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPENGD 432

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            ++ ++  G  +   +I   +  +    +     ++ N    +     ++K   N 
Sbjct: 433 FNNLLQTCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDITNVKELYNK 488


>gi|73958831|ref|XP_862721.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 20 [Canis familiaris]
          Length = 1979

 Score = 44.1 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 884  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 943

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 944  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1003

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1004 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1063

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1064 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1120

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1121 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1161


>gi|73958803|ref|XP_862368.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM2
            isoform 7 [Canis familiaris]
          Length = 1965

 Score = 44.1 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 913  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 972

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 973  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1032

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1033 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1092

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1093 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1149

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1150 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1190


>gi|73958817|ref|XP_862554.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 14 [Canis familiaris]
          Length = 1980

 Score = 44.1 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 885  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 944

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 945  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1004

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1005 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1064

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1065 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1121

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1122 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1162


>gi|24638896|ref|NP_569848.2| CG13366, isoform A [Drosophila melanogaster]
 gi|22831425|gb|AAF45522.2| CG13366, isoform A [Drosophila melanogaster]
          Length = 950

 Score = 44.1 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 31/249 (12%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            E   ++T +E       L +    + D +      + + +    LFQ          R 
Sbjct: 254 MEETHYSTNEELQATLQELADLQTQLTDTQTEN---ERLAEEKDVLFQSLC-------RQ 303

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
            +K    R Q    Q L+     +       S RE  LL        +++   +E   + 
Sbjct: 304 TEKLNESRTQISTLQELLLRDTKQPAPEVSASEREQKLL-------DLIKTSQEEREAVL 356

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               EL    + +                 +L  +   E +  LD Q+  A       EA
Sbjct: 357 LKQEELGAELAEMKQAREAG----------QLELQRQRERIALLDSQLDAANAERRQGEA 406

Query: 570 NIVDVRQGYQQALALYKRFRLLSR----QKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
                 +   Q      R   L      + EE+E  +++      +E   +       + 
Sbjct: 407 QFSQAMEEISQRAIEISRLSTLLENARSKIEELEADLSRGDKTDLSEVLDVARKEKDALE 466

Query: 626 IQIHQIESQ 634
            ++ +++ Q
Sbjct: 467 ERVAELQDQ 475


>gi|332235652|ref|XP_003267020.1| PREDICTED: cingulin-like protein 1 [Nomascus leucogenys]
          Length = 1302

 Score = 44.1 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 95/290 (32%), Gaps = 10/290 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y +    +L      L +   + E    +     +   L           +D+ 
Sbjct: 972  QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEA 1031

Query: 420  L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L  R    Q ++D   +L  K   +        +   +    +   +    +S +  +  
Sbjct: 1032 LTKRQLLEQTLKDLEYELEAKSHLKDDRGRLVKQMEDKVSQLEMELEEERNNSDLLSERI 1091

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLP 534
             +   +   +   L+   A  Q+   +   +   N +L+     L   +    E      
Sbjct: 1092 SRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQM 1151

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLL 591
            E     L +R   E   + + Q+ +  L     E  +    +      Q   L  R + +
Sbjct: 1152 EARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAM 1211

Query: 592  SRQKEEIEKQIAQVTAKGEA-EKTAILISILHE-VHIQIHQIESQEAMIE 639
             RQ EE E++I ++ +  +  ++       ++E +  Q++ ++    + +
Sbjct: 1212 KRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLRLKK 1261



 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 83/252 (32%), Gaps = 19/252 (7%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           +++++L   +      ++ +       +  R+R++   ++  ++H+       +  +  +
Sbjct: 614 EQKSKLTTEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNKKVEENSRLQQRLE 673

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +     R     L + K+ ++    E   L        + +   +  +  R ++ E   L
Sbjct: 674 ESEGELRKNLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSAKRSEDREKGAL 728

Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
              L     + +  L  +  Q    R  ER    L   L  +V          +      
Sbjct: 729 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 788

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQ----------IAQVTAKGEAEKTAILISILHEV 624
            Q  ++++    +   +   +    +Q          + Q   +    ++  L   + ++
Sbjct: 789 LQALRESVEEATKNVEVLASRSNTSEQDQAGTEMCVKLLQEENEKLQGRSEELERRVAQL 848

Query: 625 HIQIHQIESQEA 636
             QI  ++  EA
Sbjct: 849 QRQIEDLKGDEA 860



 Score = 38.3 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 52/150 (34%), Gaps = 13/150 (8%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            E    L        E+ +L   L  +   Q+    E    R       EL  Q +++V 
Sbjct: 607 SEVKDLLEQKSKLTTEVAELQRQLQLEVKNQQNIKEERERMR---ANLEELRSQHNKKVE 663

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK----- 613
           +        E +  ++R+  ++   +         +  +++ Q++++  + ++ K     
Sbjct: 664 ENSRLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDR 723

Query: 614 -----TAILISILHEVHIQIHQIESQEAMI 638
                   L+    ++   +   E QE ++
Sbjct: 724 EKGALIEELLQAKQDLQDLLIAKEEQEDLL 753


>gi|256053077|ref|XP_002570035.1| chondroitin sulfate proteoglycan [Schistosoma mansoni]
 gi|227287391|emb|CAY17654.1| Structural maintenance of chromosome 3 (Chondroitin sulfate
           proteoglycan 6) (Chromosome-associated polypeptide)
           (hCAP) (Bamacan) (Basement membrane-associated
           chondroitin proteoglycan), putative [Schistosoma
           mansoni]
          Length = 1376

 Score = 44.1 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 50/527 (9%), Positives = 138/527 (26%), Gaps = 38/527 (7%)

Query: 132 LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL-- 189
           L  + D      +  + +  +      +        +    +   G  +  +I++ L   
Sbjct: 35  LAQSLDANGPRLMITQIVTENFKSYGGMRVMGPFHKNFSCIIGPNGSGKSNVIDSMLFVF 94

Query: 190 ---------IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
                              +   N     +     ++I  G                   
Sbjct: 95  GYRASKVRSKKISQLIHYSELVPNATSCEVAVHFQKIIDHGPGASDYEVVPNSQFVISRR 154

Query: 241 LFHKGKNLYNFFGALNYLQKSI---RKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297
            +    + Y   G     +      R        +  ++++G ++ ++L +         
Sbjct: 155 AYKDNSSCYLIDGTRAVYRDVANLLRCHGVDIDHNRFLILQGEVEQIALMKPKAP----- 209

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
                         +    I+       P      +   L               + + +
Sbjct: 210 ------SEHEDGFLEYLEDIIGSSRFKQPLNIFINRIEKLNDL--RLEKLSRVKAVEKEK 261

Query: 358 DPDSFIRCYGKTAFEKLIV--ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           D    +R         +    +   ++      +  N+     ++    +   +N  + I
Sbjct: 262 DELENVRNEAIDYLRLVNQLIQMKNVLYQQNLYKESNQVKVVKEKLMNAQKETENLSSQI 321

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +++  +      +     +L Q++            K A    Q G  +     +    +
Sbjct: 322 REKTQQ---ITRLESDRDELTQRHAQLQIRQRDGKAKFAEFEAQDGQLRDEHAHTKTSAR 378

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              K    E   L  L   P     + +E+     +  E +K    ++ +  +       
Sbjct: 379 RLAKAIQAERTKLEELERLPGEADARREEIKKQLAEYEEAKKKHEEVYKETADNLSKESA 438

Query: 536 EIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            +  ++ E       L  + D+      L     +  +   R+  ++     K  +L   
Sbjct: 439 PLRIQVEESESALAPLQTEADQITSKLTLERQQYDLMMAGQRRELERVETAKKNMQLTQS 498

Query: 594 QKEEIEKQIAQVTA----KGEAEKTAILISILHEVHIQIHQIESQEA 636
           + +E E+++A         G       L   L      + ++++ EA
Sbjct: 499 KLKEREQELADAKKHLSSSGSGGNKGNLEMALASATRDLAEVKTHEA 545


>gi|221633008|ref|YP_002522233.1| ATP-dependent protease La [Thermomicrobium roseum DSM 5159]
 gi|221156805|gb|ACM05932.1| ATP-dependent protease La [Thermomicrobium roseum DSM 5159]
          Length = 832

 Score = 44.1 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 4/157 (2%)

Query: 487 LLLTLINHPAILQEQYQ--ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           ++  +   P +     +  EL +   +   L +    LF   V     LPEE+       
Sbjct: 124 IVEWVAEEPYLKALVEEIPELVEDTIEVKALTRTALELFQRLVSLVSNLPEELVTAALNI 183

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                L  L                 +  VR    +  A   R   L    ++I+ ++ +
Sbjct: 184 DDPLHLVYLLASNLRMDPEERQALLELDSVRDKLLRLNAFMSRELDLLELGKKIQSEVQE 243

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
             A+ + E    L   L  +  ++ +   QEA I  F
Sbjct: 244 EVARSQREFY--LREQLKAIQRELGETSEQEAEINEF 278


>gi|260826472|ref|XP_002608189.1| hypothetical protein BRAFLDRAFT_90395 [Branchiostoma floridae]
 gi|229293540|gb|EEN64199.1| hypothetical protein BRAFLDRAFT_90395 [Branchiostoma floridae]
          Length = 377

 Score = 44.1 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 24/210 (11%), Positives = 69/210 (32%), Gaps = 20/210 (9%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           + +Y  + + + R      +      P+                   +E        +HP
Sbjct: 66  WGQYANDVTYFLRKSGSTKKRPSSAKPAPPERTFLRQSLPPKAAKEFQEKVT-----HHP 120

Query: 496 AILQEQYQEL-----ADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCE--RGF 546
               +  +++       + +   +L KL S +  +    E       +   RL    + +
Sbjct: 121 DRSYDDLRKIVRFQQDKLNFQKCQLTKLDSEIRDYELIEETVSSNQSQELGRLESLGKEY 180

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI---- 602
              L+ L+    +     A  +    D+ +   Q     K+ +    + +++ ++I    
Sbjct: 181 ERQLQSLEIVEMELARELAERDRLQTDITRVQAQIADTEKQLQQFLAKVDKLMQEIDQEK 240

Query: 603 --AQVTAKGEAEKTAILISILHEVHIQIHQ 630
              +++ +   E+   L + + ++  +I Q
Sbjct: 241 EKQKISNESAKEQEQQLSAEIQDLKKEIAQ 270


>gi|195126335|ref|XP_002007626.1| GI12274 [Drosophila mojavensis]
 gi|193919235|gb|EDW18102.1| GI12274 [Drosophila mojavensis]
          Length = 1069

 Score = 44.1 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 88/246 (35%), Gaps = 29/246 (11%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIK-----DQKLRYYYSQAIRDRLQQLFQ 437
            M  ++E   ++    +            +  I+     D+K+R   +Q   +R+++  +
Sbjct: 491 HMKTEQELTTQANQILEVADMASNDTHQLLGTIERRRTVDEKIRSTCAQ-FTERMRENLE 549

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
                 + Y      + +    +  +   +   LV    +   +LR A  L  L  H  +
Sbjct: 550 VLDGSLNQYQEQQAGSTQQLTDELANCTNVHKRLVANATTSIENLR-ATCLEALAAHGQL 608

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
             +  + +A     +   Q + + L     ++K  + E+I   L E              
Sbjct: 609 QAQFAEAVASS--GDAHCQAVVAQLLEQMQQRKTQISEDIMANLQELEANN--------- 657

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT--AKGEAEKTA 615
                     +A +  +R G+   +   +  + L +  E +++Q+ Q+T  +  +AE+  
Sbjct: 658 -------ERHKAALDSMRNGFSPIIE--RNAKALQQHVELVKQQLQQLTALSAPDAEELQ 708

Query: 616 ILISIL 621
            L + L
Sbjct: 709 QLQAEL 714


>gi|20070691|gb|AAH26142.1| Myh11 protein [Mus musculus]
          Length = 1972

 Score = 44.1 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 98/287 (34%), Gaps = 22/287 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 877  ELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 936

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA R ++ Q       +        +K    +       + ++  ++        
Sbjct: 937  RGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSK 996

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKY 531
              +E  LL         + +    LA+       L KL      + S+        E+  
Sbjct: 997  LSKERKLLE------ERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSR 1050

Query: 532  FLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
               E++ ++L      F E +  L  Q+ +  +  A  E  +        + +    +  
Sbjct: 1051 QELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIT---QKN 1107

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
               ++  E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1108 NALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1154


>gi|73958841|ref|XP_862845.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 25 [Canis familiaris]
          Length = 1966

 Score = 44.1 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 871  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 930

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 931  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 990

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 991  LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1050

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1051 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1107

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1108 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1148


>gi|73958795|ref|XP_850764.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 3 [Canis familiaris]
          Length = 1972

 Score = 44.1 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 877  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 936

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 937  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 996

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 997  LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1056

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1057 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1113

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1114 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1154


>gi|114566727|ref|YP_753881.1| replicative DNA helicase-like protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337662|gb|ABI68510.1| primary replicative DNA helicase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 455

 Score = 44.1 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 42/143 (29%), Gaps = 6/143 (4%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  +L ++++      E Y  L++  + +     ++    S F  +      E+ +    
Sbjct: 20  ERRVLSSMLHSEDACIEVYDLLSNADFYSPRHATIFDLSISLFEREIRPTLVELLKEGHS 79

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            G     + ++       L     +    +  + + + +    R R      +   + + 
Sbjct: 80  LGVFTNPRDIE------ELKYIVEQYIDDENIKYWIKRVKDKARLRKFETFLKRNMQLLV 133

Query: 604 QVTAKGEAEKTAILISILHEVHI 626
           +       +        L  +  
Sbjct: 134 EQQESDVEQVLMAAEEELTNLTA 156


>gi|94986252|ref|YP_605616.1| ATP-dependent protease La [Deinococcus geothermalis DSM 11300]
 gi|94556533|gb|ABF46447.1| ATP-dependent proteinase. Serine peptidase. MEROPS family S16
           [Deinococcus geothermalis DSM 11300]
          Length = 813

 Score = 44.1 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 74/226 (32%), Gaps = 18/226 (7%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D  L   Y   +   ++Q+ +     +       ++     +      R+   +      
Sbjct: 56  DPTLAELYDLGVLAVVKQVVRMPDNTYQVLVEAQERARVLDEVPSAYLRVRAETQPAAAP 115

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS-----FLFSDFVEQKY 531
           + +   RE  +L  +    +  +E  ++  ++R DN +L+ L +      L         
Sbjct: 116 ATEFESREVQVL--MAEVKSAFEEYQRQNKNLRLDNYQLESLKNLTDPGALADQVAHHAT 173

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRF 588
           + PEE    L        L+ + + +          +     V++     Q+   L ++ 
Sbjct: 174 WTPEEKQDVLAALSPRARLETVLKLLTRDVERFNMDKKIAGRVKEQMDANQREYYLREQM 233

Query: 589 RLLSRQK-------EEIEKQIAQVTAKGEAEKTA-ILISILHEVHI 626
           + +S++         EIE    ++ A G  E      +  L  +  
Sbjct: 234 KAISKELGGGEEGPAEIEALREKIEAAGMPESVRDKALKELQRLER 279


>gi|323186487|gb|EFZ71833.1| replicative DNA helicase [Escherichia coli 1357]
          Length = 431

 Score = 44.1 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 39/121 (32%), Gaps = 10/121 (8%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
             E    +    +  +  ++++S +       K      + + L + G      +L+R  
Sbjct: 7   WDEVADRIVADDFYTSAHREIFSEMERLLSHGKPIDLITLAEALEQNG------KLERAG 60

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             A L   +           Y   +    R R + R+   +  +IA+     +   +  L
Sbjct: 61  GFAYLAEMSKNTPSAANICAYADIV----RERAVVREMISVANEIAEAGYAQDGRGSNEL 116

Query: 618 I 618
           +
Sbjct: 117 L 117


>gi|73958835|ref|XP_862771.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 22 [Canis familiaris]
          Length = 1966

 Score = 44.1 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 871  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 930

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 931  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 990

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 991  LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1050

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1051 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1107

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1108 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1148


>gi|73958819|ref|XP_862581.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 15 [Canis familiaris]
          Length = 1975

 Score = 44.1 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 880  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 939

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 940  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 999

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1000 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1059

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1060 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1116

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1117 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1157


>gi|73958815|ref|XP_862531.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 13 [Canis familiaris]
          Length = 1981

 Score = 44.1 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 886  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 945

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 946  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1005

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1006 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1065

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1066 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1122

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1123 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1163


>gi|327264641|ref|XP_003217121.1| PREDICTED: myosin-10-like isoform 5 [Anolis carolinensis]
          Length = 2007

 Score = 44.1 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 103/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 907  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 966

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 967  ERNQMLQNEKKKMQTHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1026

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              L+E  L+         + E   +LA+       L KL     +    +E++    E+ 
Sbjct: 1027 KFLKEKKLME------DRISECTSQLAEEEEKAKNLTKLKNKQEMMITDLEERLKKEEKT 1080

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +      + 
Sbjct: 1081 RQELEKSKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE---EELQAAIARGDDEAVQK 1137

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1138 NNALKLIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTE 1185


>gi|296208553|ref|XP_002807059.1| PREDICTED: LOW QUALITY PROTEIN: coiled-coil domain-containing protein
            18-like, partial [Callithrix jacchus]
          Length = 1427

 Score = 44.1 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 25/253 (9%), Positives = 85/253 (33%), Gaps = 4/253 (1%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            R+ +       +E +++E  + +     +++ +R      I D+ +   +K         
Sbjct: 996  RQVKLEMDQYKEELSKMEKEIMHLKRDGENKAMRLSQLDMILDQTKTELEKKTNAVKELE 1055

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            +          +    +  +++ L       K +LR+   L  ++    +  E  ++   
Sbjct: 1056 KLQHNTETELTEALQKREAIETELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTT 1113

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            I+    EL++    +     E          +    +     +  LD  +R+        
Sbjct: 1114 IKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1173

Query: 568  EANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
               +   + +   +     K+   L+ + +  ++Q+ +        +   +  +  E+  
Sbjct: 1174 IIKLEGTLEKSKLELKECNKQMESLNDKLQNAKEQLREKEFIMLQNE-QEISRLKKEIER 1232

Query: 627  QIHQIESQEAMIE 639
               +++  E++++
Sbjct: 1233 TQQRMKETESVMK 1245


>gi|229099010|ref|ZP_04229945.1| hypothetical protein bcere0020_42340 [Bacillus cereus Rock3-29]
 gi|229118041|ref|ZP_04247401.1| hypothetical protein bcere0017_43110 [Bacillus cereus Rock1-3]
 gi|228665490|gb|EEL20972.1| hypothetical protein bcere0017_43110 [Bacillus cereus Rock1-3]
 gi|228684508|gb|EEL38451.1| hypothetical protein bcere0020_42340 [Bacillus cereus Rock3-29]
          Length = 786

 Score = 44.1 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQIES 633
            +           EK          +  ++ Q+  
Sbjct: 565 RDEKLLKAQKEGEEKVEAAKKEAEGIIHELRQLRK 599


>gi|148925930|ref|ZP_01809617.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145844916|gb|EDK22020.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 458

 Score = 44.1 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 49/153 (32%), Gaps = 10/153 (6%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L + I           +++   +     Q ++  + +    ++      + +   
Sbjct: 10  LERAILSSCIMSEEAYASIAGDISPKDFSLKAHQDIFKAVIACSNNKEPISVSFLRKH-- 67

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           ++   ++L ++        L +   E +   V++       L        R   EI  +I
Sbjct: 68  KKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQLLSFAHLLPTRINKDRAVSEIADEI 127

Query: 603 --------AQVTAKGEAEKTAILISILHEVHIQ 627
                    +V ++   +   ++  +  E   Q
Sbjct: 128 GKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ 160


>gi|119602578|gb|EAW82172.1| plectin 1, intermediate filament binding protein 500kDa, isoform
            CRA_c [Homo sapiens]
          Length = 2524

 Score = 44.1 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 92/275 (33%), Gaps = 14/275 (5%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH---IKD 417
               +       ++L  E+        + E E  S     E            N    ++D
Sbjct: 2226 DHQKNLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRD 2285

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +     + Q   ++++Q+ ++            +      +     + L +  L +   +
Sbjct: 2286 KDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQA 2345

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             + + R  A    L     + QEQ + L + +      +++   L     E + F     
Sbjct: 2346 VQEATRLKAEAELLQQQKELAQEQARRLQEDK------EQMAQQL---AEETQGFQRTLE 2396

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             +R  +       ++L  +V +     A  E +    R+  ++      R  L +++K  
Sbjct: 2397 AERQRQLEMSAEAERLKLRVAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVT 2456

Query: 598  IEK--QIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            + +  +I +  +  +AE+    I+ L     ++ Q
Sbjct: 2457 LVQTLEIQRQQSDHDAERLREAIAELEREKEKLQQ 2491



 Score = 37.2 bits (84), Expect = 9.0,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 45/153 (29%), Gaps = 16/153 (10%)

Query: 497  ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            +  +  +        + ELQ+L +       ++     E    R+      +L  +++ +
Sbjct: 2218 LRLQLEETDHQKNLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAE 2277

Query: 557  VRDAGLWSATT-------------EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEK 600
             R   L                  +      R       A   R      L++Q+   EK
Sbjct: 2278 NRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEK 2337

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             + +     +        + L +   ++ Q ++
Sbjct: 2338 MLKEKMQAVQEATRLKAEAELLQQQKELAQEQA 2370



 Score = 37.2 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1705 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1764

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1765 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1802


>gi|114578191|ref|XP_001156367.1| PREDICTED: dynactin 1 isoform 9 [Pan troglodytes]
          Length = 1138

 Score = 44.1 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 105 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 164

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 165 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 224

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 225 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 284

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 285 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 344

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 345 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 404

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 405 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 460



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 89  VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 148

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 149 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 208

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 209 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 262

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 263 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 306



 Score = 37.2 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 81  EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 140

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 141 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 195


>gi|114883610|ref|YP_740300.1| putative primase [Plasmid pLB1]
 gi|113734251|dbj|BAF30427.1| putative primase [Plasmid pLB1]
          Length = 293

 Score = 44.1 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 42 CCPFHDEKTPSFHCNDSKG--FYYCF-SC 67
          CCP H+++ PS      K    + C+  C
Sbjct: 28 CCPAHNDRNPSLQVTPGKKAVLFKCWAGC 56


>gi|327264635|ref|XP_003217118.1| PREDICTED: myosin-10-like isoform 2 [Anolis carolinensis]
          Length = 1992

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 103/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 892  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 951

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 952  ERNQMLQNEKKKMQTHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1011

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              L+E  L+         + E   +LA+       L KL     +    +E++    E+ 
Sbjct: 1012 KFLKEKKLME------DRISECTSQLAEEEEKAKNLTKLKNKQEMMITDLEERLKKEEKT 1065

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +      + 
Sbjct: 1066 RQELEKSKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE---EELQAAIARGDDEAVQK 1122

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1123 NNALKLIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTE 1170


>gi|319410246|emb|CBY90586.1| replicative DNA helicase [Neisseria meningitidis WUE 2594]
          Length = 468

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 14/168 (8%)

Query: 475 KLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            L       E ++L   ++ +PA        ++   +  +E + ++  +     E +   
Sbjct: 18  SLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIAKLINESRPAD 76

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L         ++L+       L +           + Y + +    R R + R
Sbjct: 77  VITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV----RERSIMR 126

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           Q  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 127 QLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 172


>gi|291402042|ref|XP_002717663.1| PREDICTED: CDC42 binding protein kinase alpha-like isoform 1
           [Oryctolagus cuniculus]
          Length = 1732

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV ++       E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANSVRRELDDAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           ++ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|291231779|ref|XP_002735841.1| PREDICTED: KIAA0216-like [Saccoglossus kowalevskii]
          Length = 2036

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 85/267 (31%), Gaps = 9/267 (3%)

Query: 373  KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
            +     L   +   + E E    N    +  ++  L   +  I+DQ       +    R 
Sbjct: 1310 ERAKRELEFQEKKLQSEHEEEMDNQRALKKTVDRKLAEALEEIEDQCRIVSNLKKKSSRQ 1369

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
                Q                 + + +               K +K+   RE   L T I
Sbjct: 1370 AGELQDMKLLLESQQARNAALEKKQRKFDAELGRAHDDAKMEKQAKEKVQREKEHLETEI 1429

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                +  +  ++  +I + ++++  L + L            E++  +   R     L+ 
Sbjct: 1430 Y--TLTSQLDEKRNEIIHLDDKVDNLQTELRDLTSRGGKDETEKLDLKRFRRELEAKLQD 1487

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEI----EKQIAQVTA 607
             + ++ +        E   + +    Q     +++      ++ E++    +K++  + A
Sbjct: 1488 QEEELDEQAGQVQMLEQAKLRLEMQLQNIKQEHQKELDAKEQEVEDVRTNSQKKLKHLEA 1547

Query: 608  KGEAE--KTAILISILHEVHIQIHQIE 632
            + + E  +    +    E+  Q+ + +
Sbjct: 1548 QLDEEYSEKQAALKEKREIERQLKERQ 1574



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 87/242 (35%), Gaps = 23/242 (9%)

Query: 409  KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
            K     ++++     +      + ++  ++ + +      Y  K+    +QK  S    +
Sbjct: 1616 KASFKQLQNELEESQFMSQAAVKSRKGIEEELADLQQQLDYVSKSKSEAEQKMISVTRER 1675

Query: 469  SSLV-----KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ------- 516
            + L      + +   +   +  A++     +   + +   ++A++  +   LQ       
Sbjct: 1676 NDLQCKIDDQEEDFSELLKKHRAIVHQASQYQLQINDHLTQIAELSGEKESLQERVAELT 1735

Query: 517  -KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL--KQLDRQVRDAGLWSATTEANIVD 573
             K+ +++ +     +    E   + L  R   ELL  ++L+  +      +    +    
Sbjct: 1736 MKVNNYIETTVDRSQVVRFEGKCRDLDSRLELELLHKQRLEANLSKLKDSNEKLTSERDS 1795

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             +   QQ   L ++   L RQ +++  +  ++  K +            E+  Q+ + ES
Sbjct: 1796 YKSSEQQTQELNRK---LQRQLKDLRDEFFELQRKEDDAT-----RKKIELERQVEEAES 1847

Query: 634  QE 635
             +
Sbjct: 1848 SQ 1849


>gi|229105178|ref|ZP_04235827.1| hypothetical protein bcere0019_43120 [Bacillus cereus Rock3-28]
 gi|228678104|gb|EEL32332.1| hypothetical protein bcere0019_43120 [Bacillus cereus Rock3-28]
          Length = 786

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R   +
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A AL K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQIES 633
            +           EK          +  ++ Q+  
Sbjct: 565 RDEKLLKAQKEGEEKVEAAKKEAEGIIHELRQLRK 599


>gi|212691841|ref|ZP_03299969.1| hypothetical protein BACDOR_01336 [Bacteroides dorei DSM 17855]
 gi|237708047|ref|ZP_04538528.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. 9_1_42FAA]
 gi|212665597|gb|EEB26169.1| hypothetical protein BACDOR_01336 [Bacteroides dorei DSM 17855]
 gi|229457875|gb|EEO63596.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. 9_1_42FAA]
          Length = 862

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 67/212 (31%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++           +  +++    + +   K  +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQTVMVAEPDTLSTISILRGLKERYENHHKVRIKDEAIIAAVELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + E++     I   +    KL     S   E            +          +   
Sbjct: 377 RYITERFLPDKAIDLMDEAAAKLRMERDSVPEELDEISRHLKQLEIEREAIKREKDESKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           Q  +  +     +      +  +Q    L  + +   ++ E+++ +  +   +G+  K  
Sbjct: 437 QQLNKEIAELKEQETSYKAK--WQSEKELVNKIQQNKQEIEQLKFEAEKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L + + ++   +   +   AMI+
Sbjct: 495 EIRYGKLQALENEIKDIQEDLKHKQGDSAMIK 526



 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 72/272 (26%), Gaps = 41/272 (15%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       + L  + +  +DM              +    +   +      I        
Sbjct: 220 RIIRGDVPDNLKNKQIFSLDMGALVAGAKYKGEFEERLKSVVNEVVKAEGSI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      ++  P  L                   +   L   +             R+ +
Sbjct: 328 ERRFQTVMVAEPDTLSTI---------------SILRGLKERYENHHKV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + +        +  I  + +    A  L      +  + +EI + + 
Sbjct: 366 EAIIAAVELSNRYITER----FLPDKAIDLMDEA---AAKLRMERDSVPEELDEISRHLK 418

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           Q+  + EA K     S L +++ +I +++ QE
Sbjct: 419 QLEIEREAIKREKDESKLQQLNKEIAELKEQE 450


>gi|254432485|ref|ZP_05046188.1| chromosome segregation protein SMC [Cyanobium sp. PCC 7001]
 gi|197626938|gb|EDY39497.1| chromosome segregation protein SMC [Cyanobium sp. PCC 7001]
          Length = 1203

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 45/101 (44%), Gaps = 8/101 (7%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            E   G+ L++   Q++      A  EA    VR+     L   +R + L+ +  ++ + 
Sbjct: 730 REAQLGQQLEEQRPQLQQLQQRLAALEAERSSVRKALTPQL---QRQQQLAERLAQLRQA 786

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           +       + ++   L+++L  +  ++  ++ +EA +E  G
Sbjct: 787 L-----DTDQQRQQELLTLLAPLQQELTALQQEEAGVEASG 822


>gi|182684026|ref|YP_001835773.1| hypothetical protein SPCG_1056 [Streptococcus pneumoniae CGSP14]
 gi|303254258|ref|ZP_07340367.1| hypothetical protein CGSSpBS455_02192 [Streptococcus pneumoniae
           BS455]
 gi|303258882|ref|ZP_07344861.1| hypothetical protein CGSSp9vBS293_10438 [Streptococcus pneumoniae
           SP-BS293]
 gi|303261565|ref|ZP_07347512.1| hypothetical protein CGSSp14BS292_04130 [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264236|ref|ZP_07350156.1| hypothetical protein CGSSpBS397_09985 [Streptococcus pneumoniae
           BS397]
 gi|303266133|ref|ZP_07352026.1| hypothetical protein CGSSpBS457_05117 [Streptococcus pneumoniae
           BS457]
 gi|303268140|ref|ZP_07353940.1| hypothetical protein CGSSpBS458_01192 [Streptococcus pneumoniae
           BS458]
 gi|182629360|gb|ACB90308.1| hypothetical protein SPCG_1056 [Streptococcus pneumoniae CGSP14]
 gi|301801898|emb|CBW34622.1| putative chromosome partition protein [Streptococcus pneumoniae
           INV200]
 gi|302598752|gb|EFL65789.1| hypothetical protein CGSSpBS455_02192 [Streptococcus pneumoniae
           BS455]
 gi|302637145|gb|EFL67633.1| hypothetical protein CGSSp14BS292_04130 [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639825|gb|EFL70281.1| hypothetical protein CGSSpBS293_10438 [Streptococcus pneumoniae
           SP-BS293]
 gi|302642357|gb|EFL72704.1| hypothetical protein CGSSpBS458_01192 [Streptococcus pneumoniae
           BS458]
 gi|302644303|gb|EFL74557.1| hypothetical protein CGSSpBS457_05117 [Streptococcus pneumoniae
           BS457]
 gi|302646048|gb|EFL76275.1| hypothetical protein CGSSpBS397_09985 [Streptococcus pneumoniae
           BS397]
          Length = 1179

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E  +E A +R D   L+ L   L       +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAEEEASLRSDEVSLKNLQDELARLTERLEAIKSQGEQARIQEQGLSLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  +  + +G  QA      +R   ++ +K  +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEELNRLSEGEWQADKEKCQERLTTITSEKNNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 833


>gi|149737463|ref|XP_001497505.1| PREDICTED: similar to Golgin subfamily A member 5 (Golgin-84)
           (RET-fused gene 5 protein) (Ret-II protein) [Equus
           caballus]
          Length = 732

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 94/255 (36%), Gaps = 12/255 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSG 445
            E +       +   +++      +N +  +  R   ++A  + +R     +K + E   
Sbjct: 356 HEADAALKREQESYKQMQSEFAARLNKM--EVERQNLAEAVTLAERKYSDEKKRVDEMQQ 413

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             + +K N     Q+    +   + +++ K     SL+E +    L +  A   E  +  
Sbjct: 414 QVKMYKSNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSSAANSMELEELR 473

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG-FGELLKQLDRQVRDAGLWS 564
            +      E+QKL   +     E +    +++ +    R    +L  Q+ +Q        
Sbjct: 474 HEKELQREEIQKLMGQIHQLRSELQDMEAQQVSEAESAREQLQDLQDQIAQQKASKQELE 533

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           A  +    +     +    LY+    L  + ++ E++I ++  +   +  +       E+
Sbjct: 534 AELDRQKQEFHYIEED---LYRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNSSQ--SEL 588

Query: 625 HIQIHQIESQEAMIE 639
             ++HQ+   E +I+
Sbjct: 589 ENRLHQL--TETLIQ 601


>gi|148687363|gb|EDL19310.1| cut-like 1 (Drosophila), isoform CRA_c [Mus musculus]
          Length = 680

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 97/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + E + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 103 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 162

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q   ++        ++  ++   +   +          KL +     +           
Sbjct: 163 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRT 222

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 223 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 282

Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 283 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 342

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q+    +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 343 QLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 386


>gi|148666935|gb|EDK99351.1| mCG128490 [Mus musculus]
          Length = 1091

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 93/275 (33%), Gaps = 13/275 (4%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              +   KT  E+L             +E + +     +E  +L     +  N IK  + 
Sbjct: 517 DAAKKEMKTIKEELATRLNSSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRA 576

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +   ++ +  +L +  ++   E              +   G  +   Q      KL+   
Sbjct: 577 KDKDNENVIAKLNRKAKELEEELQHL---------RQVLDGKEEVEKQHRENIKKLNSVV 627

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             +E  L    ++   + ++     A +       ++L     ++  +        + + 
Sbjct: 628 ERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRYERELTDLHKANAAKDSEVQEAALRRE 687

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIE 599
           +  +   EL   L++   +A          + D+R   Q+A  A  ++   L  +  E++
Sbjct: 688 MKAK--EELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQ 745

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +++ +   +   E +  + S    +  QI  +++ 
Sbjct: 746 QRLQEAENR-NQELSQSVSSTARPLLRQIENLQAT 779


>gi|119569258|gb|EAW48873.1| hypothetical protein FLJ36090, isoform CRA_a [Homo sapiens]
          Length = 986

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 88/278 (31%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 645 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 702

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++     S      ++    + ++  + + +Q S+ + K   
Sbjct: 703 AEYTILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDC 762

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   +  L           Q+L D       L+K +         +     +  
Sbjct: 763 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 819

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 820 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 876

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E    +  A  E +        L ++  +++++  QE
Sbjct: 877 LEHMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 914


>gi|91204090|emb|CAJ71743.1| strongly similar to ATP-dependent protease Clp (chain B)
           [Candidatus Kuenenia stuttgartiensis]
          Length = 864

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 20/212 (9%), Positives = 78/212 (36%), Gaps = 9/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R +++          +  +++    + ++     + ++A++       
Sbjct: 322 YRKYIEKDAALERRFQQVYVREPTVEDTIAILRGLKERYEVHHGVRITDSAIIAAATLSS 381

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL-D 554
             + +++     I   +    KL   + S  VE      + +   + +    +   +   
Sbjct: 382 RYISDRFLPDKAIDLIDEAASKLRIEIDSMPVELDEIERKILQLEIEKEALKKEKDEASK 441

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +++       +  +      R  ++    + K  + ++ + ++   +      +G  EK 
Sbjct: 442 QRIEKIERQLSDLKEESRAFRAHWENEKKVIKEIQDINAKIDQARIEEQAAQREGNLEKV 501

Query: 615 AILI--------SILHEVHIQIHQIESQEAMI 638
           A +           L E H+++ +++  ++++
Sbjct: 502 AEIRYGRIIECERKLKEKHLELQELQKSKSLL 533



 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
            ++   F+  K     +            +  +LD   R         EA   +  +  +
Sbjct: 382 RYISDRFLPDKAIDLIDEAASKLRIEIDSMPVELDEIERKILQLEIEKEALKKEKDEASK 441

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI--HQIESQEAM 637
           Q      R   + RQ  +++++     A  E EK   +I  + +++ +I   +IE Q A 
Sbjct: 442 Q------RIEKIERQLSDLKEESRAFRAHWENEK--KVIKEIQDINAKIDQARIEEQAAQ 493

Query: 638 IEG 640
            EG
Sbjct: 494 REG 496


>gi|29727|emb|CAA37068.1| cardiac beta myosin heavy chain [Homo sapiens]
          Length = 1934

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 65/224 (29%), Gaps = 19/224 (8%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            +L+  +++ +     + R  K                  ++ + +  +K    E   L +
Sbjct: 1483 KLKNAYEESLEHLETFKRENKNLQEEISDLTEQLGSSGKTIHELEKVRKQLEAEKMELQS 1542

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
             +       E  +    I     E  ++ + +     E+   + +     L  R    L 
Sbjct: 1543 ALEEAEASLEHEE--GKILRAQLEFNQIKAEIERKLAEKDEEMEQAKRNHL--RVVDSLQ 1598

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
              LD + R         +    D+ +   Q     +      +Q + ++  +     + +
Sbjct: 1599 TSLDAETRSRNEALRVKKKMEGDLNEMEIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLD 1658

Query: 611  A---------------EKTAILISILHEVHIQIHQIESQEAMIE 639
                            E+   L + L E+   + Q E    + +
Sbjct: 1659 DAVRANDDLKENIAIVERRNNLQAELEELRAVVEQTERSRKLAD 1702


>gi|73958825|ref|XP_862647.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 18 [Canis familiaris]
          Length = 1973

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 878  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 937

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 938  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 997

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 998  LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1057

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1058 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1114

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1115 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1155


>gi|332798808|ref|YP_004460307.1| peptide chain release factor 2 [Tepidanaerobacter sp. Re1]
 gi|332696543|gb|AEE91000.1| peptide chain release factor 2 [Tepidanaerobacter sp. Re1]
          Length = 365

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 2/112 (1%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
           +   +E    +  E+   L        + QL+++   A  W+    A      Q      
Sbjct: 5   YRIEIEAAKPVLTELRDSLEIDKIKFEINQLEQKTFAADFWNDQELA--QKTLQRLNDLK 62

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             +  F LL ++ +++   I   T   + E    L++ + +   Q+ +++ Q
Sbjct: 63  EKFDNFTLLEKKYDDLLTLIELCTETDDEELRTELLNEMKDFKKQLEKMKLQ 114


>gi|327264643|ref|XP_003217122.1| PREDICTED: myosin-10-like isoform 6 [Anolis carolinensis]
          Length = 1997

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 103/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 897  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 956

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 957  ERNQMLQNEKKKMQTHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1016

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              L+E  L+         + E   +LA+       L KL     +    +E++    E+ 
Sbjct: 1017 KFLKEKKLME------DRISECTSQLAEEEEKAKNLTKLKNKQEMMITDLEERLKKEEKT 1070

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +      + 
Sbjct: 1071 RQELEKSKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE---EELQAAIARGDDEAVQK 1127

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1128 NNALKLIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTE 1175


>gi|281344048|gb|EFB19632.1| hypothetical protein PANDA_008367 [Ailuropoda melanoleuca]
          Length = 2063

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 35/298 (11%), Positives = 92/298 (30%), Gaps = 38/298 (12%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
             +   +   EKL         +  K        ++ + + +    ++   N +KD    
Sbjct: 664 QAKERAERELEKLQNREDSSEGIKKKLVEAEERRHSLENKVKRLETMERRENRLKDDIQT 723

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+               +         +++ + +   K     
Sbjct: 724 KSQQIQQMADKILELEEKHREAQVSAQHLEVHLKQKEQHYEEKIKVLDNQI--KKDLADK 781

Query: 481 SLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
              E      +  H     E+ + L++    I   +++++ L   +       K      
Sbjct: 782 ETLEN----LMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANSS 837

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALALY 585
           +  +   +   E++ +L +Q       +   EA    + +  +           + L L 
Sbjct: 838 LFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKNRLLELE 897

Query: 586 KRFRL-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            R R            L RQ  E++  + +  +     +   L +    +  Q+ Q +
Sbjct: 898 TRLREVSLEHEEQKLELKRQLTELQLSLQERES-----QLTALQAARAALESQLRQAK 950


>gi|222099796|ref|YP_002534364.1| DNA double-strand break repair rad50 ATPase [Thermotoga neapolitana
           DSM 4359]
 gi|221572186|gb|ACM22998.1| DNA double-strand break repair rad50 ATPase [Thermotoga neapolitana
           DSM 4359]
          Length = 853

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 73/242 (30%), Gaps = 20/242 (8%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------YWKKNARHRDQKGPS 463
                I D  L     + + D L +   +   E SGY R       +    R  D K   
Sbjct: 157 EISRIISDVFLDEDILKRLEDTLNKKMNELNQETSGYERLLSEIISYLDRYRLEDLKKKL 216

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
             L+          +K    E  L   +  +  I++++ +    ++      +++     
Sbjct: 217 SDLLSEKKRLLDEEEKLRGEEKRLSYLVERYREIVEKKERLKKLLQEKTRLEEEVKQE-- 274

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               + K   P     R+ E     +  +++R V          E     +    +    
Sbjct: 275 RKIKKAKELKPIFEELRIRESNLKRISDEINRYVERLRKLQTERENASKRLLLYEEDLSR 334

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGE------------AEKTAILISILHEVHIQIHQI 631
             ++   L R  EE E+ + +     E             E+   L   L E   ++ +I
Sbjct: 335 KKEQAEKLRRGLEEAEEILERSRPILEKMIRTLESIRQAEEEVEKLHKDLEEKKRELLRI 394

Query: 632 ES 633
           E 
Sbjct: 395 EG 396



 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/261 (10%), Positives = 82/261 (31%), Gaps = 22/261 (8%)

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
                       ++  E+E    +  + I   + R     +  +  ++       + S  
Sbjct: 444 YHGKAKAVDFDREQFEEMEKRKSSLESEIVILEERKKNLSSAIEETKESLMIREKDLSEL 503

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
            +  +K     ++ G  + + ++   + +  ++       L   +I+    +++   ++ 
Sbjct: 504 RKEKEKMEEDLNRLGYREGMERTLKERRRAVEELEKECRILSEKIISERTKIEQFDDQIR 563

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-------------GELLKQL 553
           +I    +E++     L     E  +   E+  +RL + G                   +L
Sbjct: 564 NIM---DEMKAKRRELEDSKAELSHL-KEDFMKRLEDAGLSVEEFRTLVNEEPKNAEDRL 619

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV-----TAK 608
                +  L     E       +  ++   +      +  +  E+ ++   +       K
Sbjct: 620 KAVETEIRLLEEDIEKEKDLSPEILEEHKKILDHLEKIKEKLSELNREEGSIRHILEEVK 679

Query: 609 GEAEKTAILISILHEVHIQIH 629
            + EK   L S L E+  ++ 
Sbjct: 680 AKEEKRKELESKLLELKKRLE 700


>gi|73958809|ref|XP_862454.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM2
            isoform 10 [Canis familiaris]
          Length = 1950

 Score = 44.1 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 898  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 957

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 958  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1017

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1018 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1077

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1078 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1134

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1135 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1175


>gi|312384577|gb|EFR29274.1| hypothetical protein AND_01929 [Anopheles darlingi]
          Length = 1375

 Score = 44.1 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 36/389 (9%), Positives = 102/389 (26%), Gaps = 20/389 (5%)

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309
               A +     +           I+L  G   +     A        +       Q  +
Sbjct: 466 GTDEASHPQDIILNGIGIAPEHCRIVLSNGNATIYPNPNATCLLNACIIEVPTAISQGDI 525

Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
           L      +    +  +                L                        G  
Sbjct: 526 LLLGRTNMFRYNNPAEAAKLRQESTQHQRSSRLDLSRLSLIAASRENLCASFMSDDDGGN 585

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK-----LRYYY 424
           +          +     +     R +    +  EL+   +  +  I++        R   
Sbjct: 586 SPFGGGGGGGNMGFSTPQATLRFRQYTPSRDEVELQDEHRKILQTIENALRQLNLERTRM 645

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +  +++++   ++     S              +    + ++       K     S+R+
Sbjct: 646 HEQFKNKIKLCTEELERLESTRRDKLMILDCRIGELMARREMVLWEKSNEKTQVDISVRQ 705

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            + L T ++     ++ Y+ +A       ELQ+L                E I       
Sbjct: 706 LSALQTQLDTKK--RDFYEYVA------KELQELQD-----CGRLDEASTELIRNAPQTE 752

Query: 545 GFGELLKQLDRQVRDAGLWSATT--EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            + E+L Q+ R + +            N  D+ +  ++      +    +++  +++ +I
Sbjct: 753 DYSEILLQISRSLDNYSQQYIREFIRRNRDDITKYEKELSEKETQLAESTQKIADLDSKI 812

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQI 631
            ++  + +          L ++  +   +
Sbjct: 813 QELEQQNKDLLQQRTEQELLQIQEKKRAL 841


>gi|282880308|ref|ZP_06289022.1| ATP-dependent chaperone protein ClpB [Prevotella timonensis CRIS
           5C-B1]
 gi|281305810|gb|EFA97856.1| ATP-dependent chaperone protein ClpB [Prevotella timonensis CRIS
           5C-B1]
          Length = 863

 Score = 44.1 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 43/140 (30%), Gaps = 10/140 (7%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    KL     S   E      +     +          ++  +  D  +    
Sbjct: 388 AIDLMDEAAAKLRMERDSLPEELDEMTRKLKQLEIEREAIKRENDEVKIKQLDKEIAELK 447

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI--------LI 618
            +      R  ++   +L  + +   ++ E ++ +  +   +G  E+ A         L 
Sbjct: 448 EQE--QSFRAKWESEKSLVNKIQQDKQEIEHLKFEADRAEREGNYERVAEIRYGKLQSLQ 505

Query: 619 SILHEVHIQIHQIESQEAMI 638
           + +  +  Q+   +  E M+
Sbjct: 506 ADIENIKKQLKATQGGEGMV 525


>gi|73974722|ref|XP_857294.1| PREDICTED: similar to plectin 1 isoform 1 isoform 7 [Canis
            familiaris]
          Length = 4544

 Score = 44.1 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 62/211 (29%), Gaps = 23/211 (10%)

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
             E     R   + A  + ++     + +      +  ++ +  E  L    +        
Sbjct: 2139 AEQEAVRRAQAEQAALKQKQVADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ------- 2191

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              +        + ELQ+L + +     ++     E    R+      +L  +++ + R  
Sbjct: 2192 LEETDHQKSILDEELQRLKAEVTEAARQRNQVEEELFSVRVQMEELSKLKARIEAENRAL 2251

Query: 561  GLWSATT-------------EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQ 604
             L                  +      R       A   R      L++Q+   EK + +
Sbjct: 2252 ILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKE 2311

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                 +        + L +   ++ Q ++++
Sbjct: 2312 KMQAVQEATRLKAEAELLQQQKELAQEQARQ 2342



 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 19/274 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       +RE    +    +  AEL          +  + 
Sbjct: 1710 QELIRLRAETEQGEQQRQLLEEELARLQREAAAATHKRQELEAELAKVRAEMEVLLASKA 1769

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +   +          +     ++    ++L +    + +   +
Sbjct: 1770 RAEEESRSTSEKSKQRLEAEASRFRELAEEAARLRALAEETKRQRQLAEEDAARQRAEAE 1829

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------FLFSDFVEQKYFL 533
              L E   L  +     +  E    L +   +N  L++L            +   Q    
Sbjct: 1830 RVLAEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKAD 1887

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             EE   +L +    EL                  E  +   RQ  ++ LAL   F   + 
Sbjct: 1888 IEERLAQLRKASENEL-----------ERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 1936

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             K E+E ++ ++ +  E    +   + L     +
Sbjct: 1937 GKAELELELGRIRSNAEDTLRSKEQAELEATRQR 1970



 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 84/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+        +   +   +     + + +      Q  ++ L+++ +  + + 
Sbjct: 1204 RQLRYYRESADPLGTWLQDAKQRQERIQAVPLANSQAVREQLQQEKELLEEIERYGEKVD 1263

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E     + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1264 ECQQLAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1320

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1321 SEL---TTLTSQYIKFIRETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1377

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTA----- 615
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1378 QAKAQAEREAEELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKARQV 1437

Query: 616  --------ILISILHEVHIQIHQIESQEAMIEG 640
                     +   +  V +Q+   E Q    EG
Sbjct: 1438 EAAERSRVRIEEEIRVVRLQLEATERQRGGAEG 1470



 Score = 37.9 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1675 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLVAEQELIRLRAETEQGEQQRQLLEEELA 1734

Query: 604  QVTAKGEAE--KTAILISILHEVHIQIHQIESQEAMIE 639
            ++  +  A   K   L + L +V  ++  + + +A  E
Sbjct: 1735 RLQREAAAATHKRQELEAELAKVRAEMEVLLASKARAE 1772



 Score = 37.2 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 88/282 (31%), Gaps = 20/282 (7%)

Query: 373  KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
            ++ +E L  +    + E         D            +  + ++  R   +     RL
Sbjct: 2231 RVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARL 2290

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-----AAL 487
            +QL ++ + +         K      Q+    +     L + K   +   R+       +
Sbjct: 2291 RQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARQLQEDKEQM 2350

Query: 488  LLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCER 544
               L       Q   +     + + + E ++L   +      Q       +   ++  E 
Sbjct: 2351 AQQLAQETQGFQRTLEAERQRQLEMSAEAERLKLRVAEMSRAQARAEEDAQRFRKQAEEI 2410

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ--- 601
            G      +L  Q +   + +   +    D       A  L      L R+KE+++++   
Sbjct: 2411 GEKLHRTELATQEKVTLVHTLEIQRQQSD-----HDAERLRAAITELEREKEKLQEEATL 2465

Query: 602  IAQVTAKGEAEKTAILISILHEVHI----QIHQIESQEAMIE 639
            + Q + + +  +   L+     +      +  ++  +E  IE
Sbjct: 2466 LQQKSEEMQVVQQEQLLQETRALQESFLSEKDRLLQRERFIE 2507


>gi|73958837|ref|XP_862796.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 23 [Canis familiaris]
          Length = 1980

 Score = 44.1 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 885  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 944

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 945  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1004

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1005 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1064

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1065 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1121

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1122 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1162


>gi|84998962|ref|XP_954202.1| hypothetical protein [Theileria annulata]
 gi|65305200|emb|CAI73525.1| hypothetical protein TA20215 [Theileria annulata]
          Length = 1207

 Score = 44.1 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 85/267 (31%), Gaps = 17/267 (6%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           ++ + +     + L K E          E  E     +     I+  + +    + + ++
Sbjct: 468 KERLEQQRQEQERLRKLEERLEQERLAIEEQERLEKERIEQERIRKLEEQRLEKERLAEK 527

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            +   ++ I       +   +    R +K   ++         K   +   +E   L  L
Sbjct: 528 ERLDIEEKIRFAQEVQKRLAREETERLKKERLEQERLEKERLEKERLEQQRQEQERLRKL 587

Query: 492 IN--HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--RLCERGFG 547
                   + E+ + L   R +   ++KL         E++    E + +  RL      
Sbjct: 588 EERLEKERIHEEQERLEKERIEQERIRKL---------EEQRLEKERLAEKERLDIEEKI 638

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
              +++ +++          E    +  +  +      ++ R    +  ++E+++ +   
Sbjct: 639 RFAQEVQKRLAREETERLKKERLEQERLEKERLEKERLEQQRQEQERLRKLEERLEKERI 698

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQ 634
             E E+             +I ++E Q
Sbjct: 699 HEEQERLEKERIE----QERIRKLEEQ 721



 Score = 44.1 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 74/208 (35%), Gaps = 16/208 (7%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL-L 488
           +RL    +    +        ++  R + ++   +RL +  L K +L ++   +E    L
Sbjct: 425 ERLDIEEKIRFAQEVQKRLAREETERLKKERLEQERLEKERLEKERLEQQRQEQERLRKL 484

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--RLCERGF 546
              +    +  E+ + L   R +   ++KL         E++    E + +  RL     
Sbjct: 485 EERLEQERLAIEEQERLEKERIEQERIRKL---------EEQRLEKERLAEKERLDIEEK 535

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
               +++ +++          E    +  +  +      ++ R    +  ++E+++ +  
Sbjct: 536 IRFAQEVQKRLAREETERLKKERLEQERLEKERLEKERLEQQRQEQERLRKLEERLEKER 595

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
              E E+             +I ++E Q
Sbjct: 596 IHEEQERLEKERIE----QERIRKLEEQ 619



 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 96/264 (36%), Gaps = 20/264 (7%)

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
            + +E + R      ER + E   +  +   + +K R    +  ++RL++L ++   E  
Sbjct: 434 RFAQEVQKRLAREETERLKKERLEQERLEKERLEKERLEQQRQEQERLRKLEERLEQERL 493

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                 +      +Q+   +   Q    +    K+    E  +         + +E+ + 
Sbjct: 494 AIEEQERLEKERIEQERIRKLEEQRLEKERLAEKERLDIEEKIRFAQEVQKRLAREETER 553

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPE---EIHQRLCERGFGELLKQLDRQVRDAG 561
           L   R +   L+K    L  + +EQ+    E   ++ +RL +    E  ++L+++  +  
Sbjct: 554 LKKERLEQERLEK--ERLEKERLEQQRQEQERLRKLEERLEKERIHEEQERLEKERIEQE 611

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFR---------------LLSRQKEEIEKQIAQVT 606
                 E  +   R   ++ L + ++ R                L +++ E E+   +  
Sbjct: 612 RIRKLEEQRLEKERLAEKERLDIEEKIRFAQEVQKRLAREETERLKKERLEQERLEKERL 671

Query: 607 AKGEAEKTAILISILHEVHIQIHQ 630
            K   E+       L ++  ++ +
Sbjct: 672 EKERLEQQRQEQERLRKLEERLEK 695


>gi|50545503|ref|XP_500289.1| YALI0A20504p [Yarrowia lipolytica]
 gi|49646154|emb|CAG84227.1| YALI0A20504p [Yarrowia lipolytica]
          Length = 941

 Score = 44.1 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 71/225 (31%), Gaps = 21/225 (9%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
            Q  Q  +++ S       K       K       +    +     +  LRE   L T++
Sbjct: 82  SQRPQSAMSDVSDSSTALAKQVESLKAKLRVTDSKRKLEREQIQQLQTDLREKKKLETIV 141

Query: 493 NHPA-----ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
                    +  E  Q  AD+   +NE       L      +       + + + E    
Sbjct: 142 AKLESKLRPLSDEVKQLRADLTKTSNEHAHAKVKLEQH---EDALEMATLDREMAEEKLE 198

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL--------LSRQKEEIE 599
              ++++   ++  + S   ++      Q   Q  A     R         L+ Q +++ 
Sbjct: 199 IAKREMEELRQELNVPSERIDSADEAAIQRNAQLEAALVSLRDYSTAQEASLNEQIKQLN 258

Query: 600 KQIA-----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++      Q   +   ++     + LHE+  Q+  +   E +I+
Sbjct: 259 SKLTDYSLTQSQLESSEKRLEETQATLHELRAQLDDVMVSETLID 303


>gi|47216210|emb|CAG01244.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1322

 Score = 44.1 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 92/281 (32%), Gaps = 27/281 (9%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
               +   +K + E+        + +       +    A     L   +   + + L+  
Sbjct: 269 MQEQQAELQKHLKEAKREAKEALEAKERYMEEMSDTADAIEMATLDKEMAEERAESLQLE 328

Query: 424 Y--SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + I D L    +    E    G     ++ H  Q       ++ +LV+ +      
Sbjct: 329 VDSLKEIVDELTMDLEILKHEIEEKGSDGAASSYHVKQLEEQNARLKEALVRMRDLSASE 388

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL------FSDFVE--QKYFL 533
            +E         H  + ++  ++  ++    ++ +KL   +        +  E       
Sbjct: 389 KQE---------HVKLQKQTEKKNMELDTQRSQKEKLQEEMAAAEKTIDELKEQVDAALG 439

Query: 534 PEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----R 587
            EE+ + L ER     E +++L   V D    +   +    + R+   +   +      R
Sbjct: 440 AEEMVEMLTERNLDLEEKVRELRETVADLEAINEMNDELQENARETELELREMLDLGAAR 499

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            R   ++ E  ++ +A        +K   L + L +V+ ++
Sbjct: 500 VREADKRVEAAQETVADYQQT--IKKYRELTAHLQDVNREL 538


>gi|13162302|ref|NP_077044.1| dynactin subunit 1 [Rattus norvegicus]
 gi|2506256|sp|P28023|DCTN1_RAT RecName: Full=Dynactin subunit 1; AltName: Full=150 kDa
           dynein-associated polypeptide; AltName: Full=DAP-150;
           Short=DP-150; AltName: Full=p150-glued
 gi|1743380|emb|CAA44091.1| 150K dynein-associated polypeptide [Rattus norvegicus]
          Length = 1280

 Score = 44.1 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 96/301 (31%), Gaps = 15/301 (4%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +             L  E         ++E E       +   +LEI          D  
Sbjct: 294 EEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGA 353

Query: 420 LRYYYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              Y  + + ++  +L    +           +     +  +  +Q L      + +L +
Sbjct: 354 ASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQE 413

Query: 479 KPSLREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPE 535
           + S  E+ +        A L  +E  + L D   +  E +++L   +       +     
Sbjct: 414 ELSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDEL 473

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           + + R  E    E L     +VR+A       +  + D +Q  ++   L    + ++R+ 
Sbjct: 474 QENARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNREL 533

Query: 596 EEIEKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKM 644
              ++   +   +   E      K A   +    + +++ Q+E  +A     ++  F   
Sbjct: 534 TNQQEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPD 593

Query: 645 S 645
           S
Sbjct: 594 S 594



 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 74/233 (31%), Gaps = 17/233 (7%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +++ LR    + + ++L +  +   +E     +  +K+    +Q    +  MQ      +
Sbjct: 216 EEEGLRDQ-VRDLEEKL-ETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQ 273

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQ 529
              K +      L     +   + +    +     D        + L   +    + V++
Sbjct: 274 RRLKEAKEAKEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDE 333

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                E +   + E+G                       A + D     +   +  K+  
Sbjct: 334 LTTDLEILKAEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEH 387

Query: 590 LLSRQKEEIEKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +  ++  E + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 388 VKLQKLMEKKNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 440


>gi|225377026|ref|ZP_03754247.1| hypothetical protein ROSEINA2194_02670 [Roseburia inulinivorans
          DSM 16841]
 gi|225211123|gb|EEG93477.1| hypothetical protein ROSEINA2194_02670 [Roseburia inulinivorans
          DSM 16841]
          Length = 633

 Score = 44.1 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 15/93 (16%)

Query: 1  MNYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
          M Y ++ I        + + + G+     R                HD    S     +K
Sbjct: 1  MYYTQEQIDRA-NQADLVSFLQGRGEQLTRAGNEYRWKR-------HD----SLTVRGNK 48

Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
            +Y  S    G  + F+    G S  E+V+ L
Sbjct: 49 --WYRHSQSKGGAPVDFVMEFFGKSVTEAVELL 79


>gi|172040472|ref|YP_001800186.1| chromosome segregation protein [Corynebacterium urealyticum DSM
           7109]
 gi|171851776|emb|CAQ04752.1| chromosome segregation protein [Corynebacterium urealyticum DSM
           7109]
          Length = 1162

 Score = 44.1 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 75/227 (33%), Gaps = 12/227 (5%)

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R Y ++ + +   +L +  + E         ++AR    +  +     S+ ++    + 
Sbjct: 254 EREYLTEQLEEHSGELAE--VEEELRTALEDAESARTLWYRLSAVAEKNSASLRIAADRA 311

Query: 480 PSLREAALL----LTLINHPAILQEQYQELAD-IRYDNNELQKLWSFLFSDFVEQKYFLP 534
            +  E A L      L+        + +EL + +     +L+ +   +       +    
Sbjct: 312 QASEETAWLGPDPAHLLERAERADAEQEELDEAVEIAQEKLEGIRETVAEAQDAARQAEN 371

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E + Q        E + +L  +   A    A  +A +    +   +     +       +
Sbjct: 372 EHLAQVRAIADRREGVVRLLSRQEAASERLANAQAEVERSEEAVGEHTEELENLSEELAE 431

Query: 595 KEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEAMIE 639
             +   ++A +   GE        L   +  V  +  ++ +QE  +E
Sbjct: 432 AAD---ELADIEGGGEELRATAEQLAREVQTVEQRAEELRNQERALE 475


>gi|119569260|gb|EAW48875.1| hypothetical protein FLJ36090, isoform CRA_c [Homo sapiens]
          Length = 960

 Score = 44.1 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 88/278 (31%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 619 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 676

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++     S      ++    + ++  + + +Q S+ + K   
Sbjct: 677 AEYTILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDC 736

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   +  L           Q+L D       L+K +         +     +  
Sbjct: 737 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 793

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 794 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 850

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E    +  A  E +        L ++  +++++  QE
Sbjct: 851 LEHMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 888


>gi|402590|emb|CAA52922.1| Cux homeodomain protein [Mus musculus]
          Length = 1332

 Score = 44.1 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 47/132 (35%), Gaps = 13/132 (9%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV----------RDAGLWSATTEANIVD 573
           +   E      E + ++L        L    ++               +  A  E  I  
Sbjct: 57  NQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVAIEVLTRSSLEVELAAKEREIAQ 116

Query: 574 VRQGYQQALALYKRFRLLSR-QKEEIEKQIAQVTAKGEA-EKTAILISILHEVHIQIHQI 631
           + +  Q+  A   + R  S  Q  ++E+Q+    +  +  E+     +   EV  +++ +
Sbjct: 117 LVEDVQRLQASLTKLRENSASQISQLEQQLNAKNSTLKQLEEKLKGQADYEEVKKELNTL 176

Query: 632 ESQE-AMIEGFG 642
           +S E A  EG G
Sbjct: 177 KSMEFAPSEGAG 188


>gi|73958839|ref|XP_862820.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 24 [Canis familiaris]
          Length = 1976

 Score = 44.1 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 881  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 940

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 941  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1000

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1001 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1060

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1061 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1117

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1118 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1158


>gi|289613831|emb|CBI59314.1| unnamed protein product [Sordaria macrospora]
          Length = 1508

 Score = 44.1 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 38/362 (10%), Positives = 106/362 (29%), Gaps = 12/362 (3%)

Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
            +A  + + + L  A        +     + +     +          ++          
Sbjct: 618 WEAERRQLQAELSRAQERASGLQMSLDQLQQLEGNLSNKEARMQQALQLENERHKREEEL 677

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP-LVDMLWKRETENRSFNTPDERAELE 405
               +   +    +   R        K + +            + +       ++  E+ 
Sbjct: 678 LSRQIQELQQ---NLQSRQQMLEDLRKEMRQVQDQHRQTQLDYQAQTDKVAALEDEVEVL 734

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
               +  +   DQ L     +   D  Q+L     T +          A  +     +  
Sbjct: 735 QAALDEESERADQDL-EQVQKECDDLKQKLASAQATSNGTRASMNALGANAQPYNENAAS 793

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           L        +   + + RE  LL     +  +  E      ++ +   E  +L + L   
Sbjct: 794 LKLQLADASENLARIT-REKKLLQE--RYNNLDAEARSLRINLSHTTAERDELEAELQQH 850

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-L 584
             +       ++ Q   +        +LD +VR     + +      ++++  +  +   
Sbjct: 851 KDQGPDQDTFQLDQ--EKLNLRSAKTRLDNEVRRLREENRSLLEQQRNMQKSLEGEIEKA 908

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
                 LS++  +++ ++   ++    E        + E+  +I ++E+Q+A    F  +
Sbjct: 909 SAEEERLSQEILQLQAKVHDSSSSAPGELVTA-RRTIRELERRIAELETQKATSSLFPNL 967

Query: 645 SG 646
            G
Sbjct: 968 GG 969



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 73/220 (33%), Gaps = 15/220 (6%)

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           L+ ++ +    +    F +   + +   +  K   +   Q+           ++   ++ 
Sbjct: 195 LKIHFLEEALRKAGPGFSEAALKENTELKVDKATMQRDLQRYKKTLTSAEKELEKYRAQM 254

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             L+E A      +    L E  +    +     E+++L   L     + +         
Sbjct: 255 MELQEKATKKF--SDGNQLAELERLRQLVEEKEAEIRRLQQLLEHGQGQGQD-------- 304

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                   EL + +     D      T + +  +V +  ++A    ++ +    +  E+E
Sbjct: 305 --QNEKLEELQEHIADLEHDIRQKDLTIDEHEEEVEELREKAAEFEEQLKEAQERIAELE 362

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           ++  +  +    E        + ++  +I ++E Q   I+
Sbjct: 363 EKEDKAPSS---EALQEARETIEDLQHEIRRLEQQLDDIK 399


>gi|150036268|ref|NP_004002.2| dystrophin Dp260-1 isoform [Homo sapiens]
          Length = 2344

 Score = 44.1 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 1188 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 1243

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 1244 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 1303

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 1304 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 1362

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 1363 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 1422

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 1423 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 1482

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 1483 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 1541

Query: 550  -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 1542 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 1601

Query: 609  GEA 611
             + 
Sbjct: 1602 TDE 1604



 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            L +  +K   +     +  K        K  S R   ++L+  +      L E  +   
Sbjct: 360 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 419

Query: 491 -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                 I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 420 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 479

Query: 546 ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                ELL++ D   +         E  I                        +   Q  
Sbjct: 480 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 539

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 540 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 591


>gi|157738615|ref|NP_001099034.1| coiled-coil alpha-helical rod protein 1 isoform 1 [Homo sapiens]
 gi|123287170|emb|CAM25639.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
 gi|220860578|emb|CAX15089.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
          Length = 871

 Score = 44.1 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 656 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 715

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 716 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 775


>gi|62087252|dbj|BAD92073.1| dystrophin Dp427c isoform variant [Homo sapiens]
          Length = 1392

 Score = 44.1 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 52/450 (11%), Positives = 127/450 (28%), Gaps = 34/450 (7%)

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 231 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 286

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
            +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 287 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 346

Query: 323 ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                     D   +    + I+     +          L                 F  
Sbjct: 347 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 405

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 406 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 465

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
           +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 466 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 525

Query: 493 NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
               + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 526 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGL- 583

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                      L+    E    +  Q   +   L K+   ++ + E++   +     + +
Sbjct: 584 ---------EKLYQEPRELPPEERAQNVTRL--LRKQAEEVNTEWEKLN--LHSADWQRK 630

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEG 640
            ++T   +  L E   ++     Q  +I+G
Sbjct: 631 IDETLERLRELQEATDELDLKLRQAEVIKG 660


>gi|73958827|ref|XP_862671.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM2
            isoform 19 [Canis familiaris]
          Length = 1952

 Score = 44.1 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 900  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 959

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 960  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1019

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1020 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1079

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1080 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1136

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1137 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1177


>gi|38604982|sp|Q99JP6|HOME3_MOUSE RecName: Full=Homer protein homolog 3; Short=Homer-3
 gi|13543212|gb|AAH05773.1| Homer homolog 3 (Drosophila) [Mus musculus]
          Length = 356

 Score = 44.1 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 66/208 (31%), Gaps = 13/208 (6%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             RL +   +   E +  G     +         +    +  L + + +  P   E   L
Sbjct: 112 AARLAREKSQDGGEFTSTGLALASHQVPPSPLVSTNGPGEEKLFRSQSADTPGPTERERL 171

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +++  ++ + Q++        +   Q+L   L         +  +   QR       +
Sbjct: 172 KKMLSEGSVGEVQWEA-EFFALQD-SNQRLAGALREANAAATQWRQQLEVQRAEAELLRQ 229

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            + +L+ QV    + +   EA    V Q       L  R +   +  +       +    
Sbjct: 230 RVAELEAQVAVEPVRAGEKEATSQSVEQ-------LEARVQTKDQTLKNQSTGTREAPDT 282

Query: 609 GEAEKTAILISILH----EVHIQIHQIE 632
            E E+T   +  L     E+  Q+  +E
Sbjct: 283 AEREETQQQVQDLETRNAELEQQLRAME 310


>gi|303241442|ref|ZP_07327945.1| zinc finger CHC2-family protein [Acetivibrio cellulolyticus CD2]
 gi|302591051|gb|EFL60796.1| zinc finger CHC2-family protein [Acetivibrio cellulolyticus CD2]
          Length = 350

 Score = 44.1 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 12/91 (13%)

Query: 3  YPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
          +  + I+     + + +L  QY    ++    A+          H +++   +       
Sbjct: 12 FTDEEIQRA-NSVDLIDLARQYGFQLEKGGRKAM----------HAKQSGGLYIFKDSNR 60

Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          +Y ++   KG  + F+      S+ E+V  L
Sbjct: 61 FYHWTADEKGGPIDFVMKYGNASYQEAVAML 91


>gi|302389626|ref|YP_003825447.1| chromosome segregation protein SMC [Thermosediminibacter oceani DSM
           16646]
 gi|302200254|gb|ADL07824.1| chromosome segregation protein SMC [Thermosediminibacter oceani DSM
           16646]
          Length = 1185

 Score = 44.1 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 28/271 (10%), Positives = 88/271 (32%), Gaps = 33/271 (12%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
                      +       ++   +E  +    + I   +     +Q   + L Q   + 
Sbjct: 670 SFKKSSLFLSRKREFREIKEKMGIVEEEISALKSRISSLEEAMEKTQRSIETLSQNIYRS 729

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
             E +G  +   +     +++   QRL++  L K ++  +    +  +L           
Sbjct: 730 NLEIAGLEKEQMEKKGLMEERLERQRLLK--LEKKQIESEIEDIDRQIL----------- 776

Query: 500 EQYQELADIRYDNNELQ----KLWSFLFSDFVEQKYFLPE-----EIHQRLCERGFGE-- 548
           +  ++++ I   N + Q     L   +      +     E      +   L ++  G   
Sbjct: 777 KVQEDISSIEEQNAKHQSRVETLQREIAESKKSKDELETEINDLRAVLNSLRQQELGLKY 836

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSRQKEEIEKQIAQ 604
            ++ L++   +        E N+  +R+  +  +     L  R    +R +  +   + +
Sbjct: 837 QIQNLEQNKEEWQKEKRELEQNMDAIREALESTVEKMRELQLRLEDNARDEANLHNALIE 896

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +      ++   +   +  +   + +++ +E
Sbjct: 897 M-----KKQKEEVEGKIQAIQKDLERLQREE 922



 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 80/222 (36%), Gaps = 19/222 (8%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R    + I++++  + ++     S      +   + +       + +  S ++    +K 
Sbjct: 680 RKREFREIKEKMGIVEEEISALKSRISSLEEAMEKTQRSIETLSQNIYRSNLEIAGLEKE 739

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            + +  L+   +    +L+ + +++        E++ +   +     +            
Sbjct: 740 QMEKKGLMEERLERQRLLKLEKKQIES------EIEDIDRQILKVQEDISSIEE------ 787

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY----QQALALYKRFRLLSRQKE 596
                    ++ L R++ ++       E  I D+R       QQ L L  + + L + KE
Sbjct: 788 -QNAKHQSRVETLQREIAESKKSKDELETEINDLRAVLNSLRQQELGLKYQIQNLEQNKE 846

Query: 597 EIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEA 636
           E +K+  ++    +A  E     +  + E+ +++      EA
Sbjct: 847 EWQKEKRELEQNMDAIREALESTVEKMRELQLRLEDNARDEA 888


>gi|157933075|gb|ABW05395.1| paramyosin isoform 2 [Dictyocaulus viviparus]
          Length = 876

 Score = 44.1 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 90/273 (32%), Gaps = 23/273 (8%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D   +            E+  +       +      +   +R  L+    + +  + DQK
Sbjct: 166 DQVQKDKHIAEKAAERFEAQSIELSNKVEDLNRHVNDLAQQRQRLQAENNDPLKEVHDQK 225

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           ++    Q ++  L Q  ++         R   +      Q       ++++L +   ++ 
Sbjct: 226 VQLDNLQHVKYTLAQQLEEARRRLEDAERERSQLQSQLHQVQLELDSVRTALDEESAARS 285

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +          + +  I Q + +  A++   + E++ L   +     E           
Sbjct: 286 DAEH-----KLNLANTEITQWKSKFDAEVALHHEEVEDLRKKMLQKQAEY---------- 330

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              E     +L+++ +  +      +  E  IVD+ +       L +    L +Q  E++
Sbjct: 331 ---EEQIEIMLQKISQLEKAKSRLQSEVEVLIVDLEKAQNTIAILERAKEQLEKQCAELK 387

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +I ++  +            L  V+ ++ +++
Sbjct: 388 VRIDELNVE-----LEAAQRELRAVNAELQKMK 415


>gi|156544337|ref|XP_001607303.1| PREDICTED: similar to CG17927-PF [Nasonia vitripennis]
          Length = 1964

 Score = 44.1 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 81/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1574 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1633

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    + +  +   + E           A+  E 
Sbjct: 1634 NKANAEAQKNIKRYQQQLKDVQTALEEEQRARDEARELLGISER-------RANALQNEL 1686

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1687 EESRQLLEQADRGRRQAEQELADAHEQLNELSAQNASISAAKRKLEAELQTLHSDLDELL 1746

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E QI ++  + +  +   L
Sbjct: 1747 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQVRLDEAEANAL 1806

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1807 KGGKKAIQKLEQRVRELENE 1826



 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 68/221 (30%), Gaps = 13/221 (5%)

Query: 428  IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--GPSQRLMQSSLVKGKLSKKPSLREA 485
            I +R     Q  + E         +  R  +Q+     ++L + S     +S      EA
Sbjct: 1674 ISERRANALQNELEESRQLLEQADRGRRQAEQELADAHEQLNELSAQNASISAAKRKLEA 1733

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L     +   +L E        +    +  +L   L     +      E++ + L  + 
Sbjct: 1734 ELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADEL--RAEQDHAQTQEKLRKALETQI 1791

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
                ++  + +           +     VR+   +     +R     +   + E++I ++
Sbjct: 1792 KELQVRLDEAEANALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKSERRIKEL 1851

Query: 606  TAKGEAEK---------TAILISILHEVHIQIHQIESQEAM 637
              + + ++            L   +     QI + E   A+
Sbjct: 1852 AFQADEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL 1892



 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 66/223 (29%), Gaps = 12/223 (5%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + + D ++ L  +            K   R   +K   Q  ++ +    +  +   LR  
Sbjct: 1504 KNLADEVKDLLDQIGEGGRNIHEIEKARKRLEAEKDELQAALEEAEAALEQEENKVLRSQ 1563

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
              L  +     I +   ++  +        Q+    + +    +     E +  +     
Sbjct: 1564 LELSQV--RQEIDRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEA 1621

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK--------EE 597
                L+        A   +           +  Q AL   +R R  +R+           
Sbjct: 1622 DINELEIALDHANKANAEAQKNIKRYQQQLKDVQTALEEEQRARDEARELLGISERRANA 1681

Query: 598  IEKQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQEAMI 638
            ++ ++ +     E            L + H Q++++ +Q A I
Sbjct: 1682 LQNELEESRQLLEQADRGRRQAEQELADAHEQLNELSAQNASI 1724


>gi|94733740|emb|CAK05349.1| novel protein similar to vertebrate epidermal growth factor
           receptor pathway substrate 15 (EP15) [Danio rerio]
          Length = 928

 Score = 44.1 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 68/231 (29%), Gaps = 18/231 (7%)

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              Q +   L               R     +           +   + ++   S     
Sbjct: 345 LIQQKVSKGLDPPQALTPDMIPPSERGTPGPSLSGYMTPVGSDMAALTEMRRDSSSSVGS 404

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E   +  L     I QE  Q  + + + +      W  L   +  ++     E   R  
Sbjct: 405 GEFTGIKEL---DDISQEIAQLQSTLAFTH------WDTLREKYTLEQDIRETEEAIRHK 455

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                E+   LDR+        A  +     + +  QQ   L      + ++ +E  + I
Sbjct: 456 TTEVQEMQNDLDRETSSLQELEAQKQDAQDRLEEMDQQKAKLEDMLNDVRQKCQEESQMI 515

Query: 603 AQVT-----AKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           + +       + + +     +         +++++ +EA +E     +GR+
Sbjct: 516 SSLQTQIHSQESDLQSQEEELGRA---KADLNRLQQEEAQLEQ-SLQAGRI 562


>gi|72084313|ref|XP_781933.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
            purpuratus]
 gi|115956525|ref|XP_001176065.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
            purpuratus]
          Length = 1548

 Score = 44.1 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 39/106 (36%), Gaps = 9/106 (8%)

Query: 528  EQKYFLPEEIHQRLCERGFGELLKQLD---RQVRDAGLWSATTEANIVDVRQGYQQALAL 584
            E++         +L +    +LL +L    + V             + D+R+  +     
Sbjct: 1445 ERELHERTAAVAQLSKEEQDKLLNELQSMKQDVDVLRNERNRLNDEVQDLRRNMEDDTEA 1504

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            Y+      R+ +E+E ++  +    + ++   L +    + ++  +
Sbjct: 1505 YR------RKIDELEAELQDLKEVLDRQRRNELNNRALALDLERER 1544


>gi|332883138|gb|EGK03421.1| replicative DNA helicase [Dysgonomonas mossii DSM 22836]
          Length = 505

 Score = 44.1 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 16/208 (7%)

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
            +  R+Q     +        GK+  +    E A+L  L+            L    + +
Sbjct: 3   ESNFRNQGKRKPKETTLVPDIGKIQPQARELEEAILGALMLEKDAYSVVSDILKPESFYD 62

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL------LKQLDRQVRDAGLWSAT 566
           +  Q ++  +    V Q       + ++L + G  E       + QL  +V  A      
Sbjct: 63  SIHQIIYRAIVDLAVRQAPIDMLTVVEQLRKDGELETVGGPVYIAQLTEKVASAAHIEFH 122

Query: 567 TEANIVDVRQGYQ---------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
                                 +A         L ++ E    +I+Q   K +  +   +
Sbjct: 123 ARIIAQKYLARELISFSSNVTSKAFDETVDVDDLMQEAESKLFEISQGNVKKDVTQINPV 182

Query: 618 ISI-LHEVHIQIHQIESQEAMIEGFGKM 644
           I   LH + I  ++ E    +  GF  +
Sbjct: 183 IKEALHLLEIAANRPEGLSGLETGFTPL 210


>gi|327264637|ref|XP_003217119.1| PREDICTED: myosin-10-like isoform 3 [Anolis carolinensis]
          Length = 1986

 Score = 44.1 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 103/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 886  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 945

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 946  ERNQMLQNEKKKMQTHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1005

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              L+E  L+         + E   +LA+       L KL     +    +E++    E+ 
Sbjct: 1006 KFLKEKKLME------DRISECTSQLAEEEEKAKNLTKLKNKQEMMITDLEERLKKEEKT 1059

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +      + 
Sbjct: 1060 RQELEKSKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE---EELQAAIARGDDEAVQK 1116

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1117 NNALKLIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTE 1164


>gi|302799170|ref|XP_002981344.1| hypothetical protein SELMODRAFT_444872 [Selaginella moellendorffii]
 gi|300150884|gb|EFJ17532.1| hypothetical protein SELMODRAFT_444872 [Selaginella moellendorffii]
          Length = 495

 Score = 44.1 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 13/103 (12%), Positives = 38/103 (36%), Gaps = 10/103 (9%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLSRQKEEI-- 598
            +     ++ + +++      +  + E     +R +  +Q L    R   L R+K E+  
Sbjct: 58  RDNCKDFVINEFEKKSAALVDYLNSLECAYERLRLEAERQKLDCEHREAQLKREKAELKY 117

Query: 599 --EKQIAQVTAKGEA-----EKTAILISILHEVHIQIHQIESQ 634
             E  + +             +   L+  + E+  +I +++ +
Sbjct: 118 MLESALERDRRLEHDKCVLLNEKERLLERIQELEARIDELQGE 160


>gi|225854712|ref|YP_002736224.1| chromosome segregation protein SMC [Streptococcus pneumoniae JJA]
 gi|225722373|gb|ACO18226.1| chromosome segregation protein SMC [Streptococcus pneumoniae JJA]
          Length = 1179

 Score = 44.1 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E  +E A +R D   L+ L   L       +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAEEEASLRSDEVSLKNLQDELARLTERLEAIKSQGEQARIQEQGLSLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  +  + +G  QA      +R   ++ +K  +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEELNRLSEGEWQADKEKCQERLTTITSEKNNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 833


>gi|5032291|ref|NP_004003.1| dystrophin Dp260-2 isoform [Homo sapiens]
          Length = 2341

 Score = 44.1 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 1185 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 1240

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 1241 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 1300

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 1301 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 1359

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 1360 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 1419

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 1420 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 1479

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 1480 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 1538

Query: 550  -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             L Q  R++         T        +   +   L        R+ +E  +++ ++   
Sbjct: 1539 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 1598

Query: 609  GEA 611
             + 
Sbjct: 1599 TDE 1601



 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            L +  +K   +     +  K        K  S R   ++L+  +      L E  +   
Sbjct: 357 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 416

Query: 491 -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                 I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 417 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 476

Query: 546 ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                ELL++ D   +         E  I                        +   Q  
Sbjct: 477 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 536

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 537 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 588


>gi|145523167|ref|XP_001447422.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414933|emb|CAK80025.1| unnamed protein product [Paramecium tetraurelia]
          Length = 903

 Score = 44.1 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 80/235 (34%), Gaps = 16/235 (6%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           KD+       + + ++LQ + Q+ + +        KK   +  Q+  +Q+  QS L+   
Sbjct: 223 KDEIDSLQREKNLAEQLQNILQEQVKDQQNQITELKKKEENLKQEIKTQKDNQSELIGNN 282

Query: 476 LSKKPSLREAALLLTLINH---------PAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
                   +  L L              P  ++    ++A ++++  + Q     L +  
Sbjct: 283 SQGDAQKSKDQLPLQQQGEEKQEQGQIQPENVEALKDQIAKLKFEKEQNQSELDSLSNHK 342

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ------Q 580
            E +    +++  +         + +L      A            D  +  +      +
Sbjct: 343 KENEDLRKQKLELQNQVLEKQSQINKLQDNKIQAENVDNQNFKFQTDPEKNLKISQLTQE 402

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKG-EAEKTAILISILHEVHIQIHQIESQ 634
              L  +   +  QK+E  KQ   +   G   ++   L     E+  +I Q+++Q
Sbjct: 403 NQQLKNQITQIEDQKKEDLKQFQNMIGNGVNEQQIVDLYRQKQELQSEIRQLQNQ 457


>gi|119500032|ref|XP_001266773.1| DNA repair protein Rad50 [Neosartorya fischeri NRRL 181]
 gi|119414938|gb|EAW24876.1| DNA repair protein Rad50 [Neosartorya fischeri NRRL 181]
          Length = 1306

 Score = 44.1 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 99/280 (35%), Gaps = 30/280 (10%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-------QKLRYYYSQAIR 429
             ++      W R ++    +   E  +  +     ++ +++       +  +    +A+ 
Sbjct: 733  RAVSTAYDTWTRLSKTEIPDLEKEEDQYVLQRDELLDQLENHDKIVSEKVEKKRDVEALS 792

Query: 430  D------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM----QSSLVKGKLSKK 479
                   R +   +   ++        + N   R  +   + +     ++  +K  LSK 
Sbjct: 793  KTVNTIVRYESEIKTIRSQIQDLSANQQDNTATRTLEDIQEEIAGIGEKTRALKKTLSKL 852

Query: 480  PSLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             + RE A   T +N+  + L++    L + ++       L + +  ++        E I 
Sbjct: 853  TNDREQA--RTEMNNLELQLRDARSRLDNAKFQLERKSDLLARI-EEYKNLNNQQREAIA 909

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            +   +R   EL  +L +        S   EA   +++QG  Q            RQ +  
Sbjct: 910  KA--DRDIEELTPELLKYQAQYDDISQRVEAREREMQQGISQLSESI-------RQLDLA 960

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
             ++I     +G   +       L  +  +I Q+E+++A I
Sbjct: 961  TEEIDSYNERGGPSQLERSRRELQTIETEISQLEAEQANI 1000



 Score = 37.9 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 66/225 (29%), Gaps = 14/225 (6%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            D+ L+    Q    +LQ   Q+   + +      +     +          +    K  
Sbjct: 302 PDEWLQSNLEQFESKQLQYQQQEEAQKENYMEIKDRIEQARQKLGVKQAEYGKYENDKAN 361

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL------FSDFVEQ 529
             ++   R+        +H       +  + D    ++ ++K+   L            +
Sbjct: 362 FERQVERRQRMTREIARSHN---IRGFDNIQDQTDIDDFMRKIRKLLKEQNQALERVKRE 418

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 E+   L E G  +    L      A       +    + +    +         
Sbjct: 419 AQTELREVQSTLNEIGQRK--SALQESKNAAKRQIGANDKEASNYQAKLNEIDVDEGVQA 476

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +    E+I  ++       +  ++A L   + +V+ ++H +E +
Sbjct: 477 AVEANIEDISSRLNDAK---DRARSASLDQEIQDVNSELHALEDE 518


>gi|73958833|ref|XP_862749.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 21 [Canis familiaris]
          Length = 1966

 Score = 44.1 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 871  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 930

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 931  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 990

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 991  LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1050

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1051 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1107

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1108 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1148


>gi|327264639|ref|XP_003217120.1| PREDICTED: myosin-10-like isoform 4 [Anolis carolinensis]
          Length = 1984

 Score = 44.1 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 103/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 884  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 943

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 944  ERNQMLQNEKKKMQTHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1003

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              L+E  L+         + E   +LA+       L KL     +    +E++    E+ 
Sbjct: 1004 KFLKEKKLME------DRISECTSQLAEEEEKAKNLTKLKNKQEMMITDLEERLKKEEKT 1057

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +      + 
Sbjct: 1058 RQELEKSKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE---EELQAAIARGDDEAVQK 1114

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1115 NNALKLIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTE 1162


>gi|301603965|ref|XP_002931652.1| PREDICTED: WD repeat-containing protein 65-like [Xenopus (Silurana)
            tropicalis]
          Length = 1190

 Score = 44.1 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/312 (10%), Positives = 93/312 (29%), Gaps = 47/312 (15%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC---INHIKDQKL 420
            +       +  + E     +   + +  N +    +   +    ++        +K    
Sbjct: 702  KNQVMLELKTRVEELKMENEYQLRLKDMNYNEKLKELTEKFIQEMEVLKTTNQILKTDSE 761

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R        + + +L +K   E         +      +K    +L    + +    +  
Sbjct: 762  RQDIKHQ--EDVAELLEKQSREIQDLETSNSQKLLLEYEKYQELQLKSQRMQEEYEKQLH 819

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             L E+ +         I +    +L +          L   +     E++    E++   
Sbjct: 820  ELEESKIQAL----EEITEHYEAKLQEKMSVLQLFSSLQKEI-----EERAADIEKMKA- 869

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----------------- 583
              ++    ++K L++ +          +  I D  +                        
Sbjct: 870  -EQQKLQGVIKSLEKDILGLKREIQERDETIQDKEKRIYDLKKKNQELEKFKFVLDYKIK 928

Query: 584  -LYKRFRLLSRQKEEIEKQIAQVTAKGE-------------AEKTAILISILHEVHIQIH 629
             L K+      + +E+++QI ++ ++ E             AE    L +   E+H +  
Sbjct: 929  ELKKQIEPRENEIKEMKEQIQEMESELERFHKQNSQLDLNIAELKQKLKATDREMHKERQ 988

Query: 630  QIESQEAMIEGF 641
            ++   EA+++ F
Sbjct: 989  KVRDIEAVVKRF 1000



 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 85/277 (30%), Gaps = 12/277 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                +++L ++S  + +   K+  E             E +       +   +L     +
Sbjct: 796  EYEKYQELQLKSQRMQEEYEKQLHELEESKIQALEEITEHYEAKLQEKMSVLQLFSSLQK 855

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             I +R   + +    +    G            K   Q   ++   K K       +   
Sbjct: 856  EIEERAADIEKMKAEQQKLQGVIKSLEKDILGLKREIQERDETIQDKEKRIYDLKKKNQE 915

Query: 487  L--LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            L     ++++   ++E  +++       NE++++   +     E + F  +     L   
Sbjct: 916  LEKFKFVLDYK--IKELKKQIEPRE---NEIKEMKEQIQEMESELERFHKQNSQLDLNIA 970

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               + LK  DR++          EA +   +      +   +  ++L     E+  +  Q
Sbjct: 971  ELKQKLKATDREMHKERQKVRDIEAVVKRFKTDLHNCVGFIQEPKMLKDNIRELYSKYVQ 1030

Query: 605  VTAKG-----EAEKTAILISILHEVHIQIHQIESQEA 636
             +        +A+           +   +  ++ + A
Sbjct: 1031 DSDVAEIVGVDADIQREYARQREHLERSLSTLQKKLA 1067


>gi|291402044|ref|XP_002717664.1| PREDICTED: CDC42 binding protein kinase alpha-like isoform 2
           [Oryctolagus cuniculus]
          Length = 1719

 Score = 44.1 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV ++       E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANSVRRELDDAFRQIKAYEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           ++ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|225848734|ref|YP_002728898.1| chaperone protein ClpB [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644278|gb|ACN99328.1| chaperone protein ClpB [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 991

 Score = 44.1 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 8/137 (5%)

Query: 505 LADIRYDNNELQKL-----WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +   ++ +  +  L        L   +   +    E   + L E+     L     +   
Sbjct: 518 IPARKFPDKAIDALDQACARKKLKLVYASPEVIELERKIKMLDEQIVQASLDGNYEKEAK 577

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
             +  A  E  + D++    ++     +   L RQ +E+EKQI   + KG+ EK A    
Sbjct: 578 LKIEKANLEKQLKDLKA---KSSNEKAKLEELERQLQEVEKQIEFYSQKGDYEKEAEYKI 634

Query: 620 ILHEVHIQIHQIESQEA 636
              ++  +I  ++ + A
Sbjct: 635 KKAQIEKEIKALQQKLA 651



 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 65/217 (29%), Gaps = 18/217 (8%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y     +R++ L  +   + +      + +      KG         L       +  + 
Sbjct: 389 YRGEFEERMKSLLDELKKDPNIILFIDELHTIVGAGKGEGASDAGQLLKPALARGEIRVI 448

Query: 484 EAALL----LTLINHPAI---LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            A  L      +   PA+    Q  Y E  DI      L+ L   L              
Sbjct: 449 GATTLDEYRKYIEKDPALERRFQPVYVEEPDIDTTIEILKALRPRLEKHHN--------- 499

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
              ++ ++      K   R +          +A      +   + +        L R+ +
Sbjct: 500 --VKISDKAIEAAAKLTGRYIPARKFPDKAIDALDQACARKKLKLVYASPEVIELERKIK 557

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +++QI Q +  G  EK A L      +  Q+  +++
Sbjct: 558 MLDEQIVQASLDGNYEKEAKLKIEKANLEKQLKDLKA 594


>gi|225455663|ref|XP_002263260.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296084078|emb|CBI24466.3| unnamed protein product [Vitis vinifera]
          Length = 256

 Score = 44.1 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 54/163 (33%), Gaps = 20/163 (12%)

Query: 491 LINHPAILQEQY-QELADIR--------YDNNELQKLWSFLFSDFVEQKYFLPE----EI 537
           +  +P++  E     LA               E  +L  ++  ++ + +    E      
Sbjct: 1   MAQNPSLAPEIGPDGLAREAPVIAYTERIIEEEQLQLKKYIEENYSKIRDVERELSNLTF 60

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             +L        L+ L +++  +    +  +      R+ ++ A    K    + ++  +
Sbjct: 61  ELKLTAGPKKAALELLRKKIEMSTERISVAKQKEEQARKVWEAASKAVKDEEAVKQKLCD 120

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
              Q+ Q       E +    S L E+  ++  +    A I G
Sbjct: 121 DLSQLVQ-------ESSHTQFSRLEELKRRLEALNPSRASISG 156


>gi|13259508|ref|NP_075408.1| dynactin subunit 1 isoform 2 [Homo sapiens]
 gi|5915905|gb|AAD55812.1| dynactin 1 p135 isoform [Homo sapiens]
          Length = 1144

 Score = 44.1 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 106 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 165

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 166 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 225

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 226 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 285

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 286 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 345

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 346 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 405

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 406 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 461



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 90  VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 149

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 150 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 209

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 210 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 263

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 264 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 307


>gi|268576955|ref|XP_002643459.1| Hypothetical protein CBG16112 [Caenorhabditis briggsae]
          Length = 915

 Score = 44.1 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 62/220 (28%), Gaps = 22/220 (10%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  YS+    R   +     T  S  GR   + A              S   +G+     
Sbjct: 217 RRRYSKDSAKRSSGVAAASTTVASSGGRGRGRVATGATTVRAQGNASTSPSSRGRGKSSA 276

Query: 481 SLREAALLLTLINHPAILQEQYQELAD-IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           +             P I +++   LA          +KL   L          + E   +
Sbjct: 277 TNA-----------PTITRKRDAHLASGSASFTPLYEKLQKDLIEAAR-----VTEVFKK 320

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                G   L   L              E  +  ++    + L   K    L +  +E+E
Sbjct: 321 ETATEGLKTLQGNLRESEDQKRAIQKEKEDAVGKLQDLEGKILQCNKDKEHLQKTVKELE 380

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +I +     +      L + L  V  +  +++ +   +E
Sbjct: 381 GKIQESVVSNK-----ELEARLQVVDSKKGKLQEENRRLE 415


>gi|15669512|ref|NP_248322.1| purine NTPase [Methanocaldococcus jannaschii DSM 2661]
 gi|18202578|sp|Q58718|RAD50_METJA RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|1591962|gb|AAB99331.1| purine NTPase [Methanocaldococcus jannaschii DSM 2661]
          Length = 1005

 Score = 44.1 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 86/251 (34%), Gaps = 11/251 (4%)

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
           + + F    +  +   +L   +N IKD+  R    + + + L+ L ++   E     +  
Sbjct: 329 KLKEFINKSKYRDDIDNLDTLLNKIKDEIERVETIKDLLEELKNLNEEI--EKIEKYKRI 386

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI-LQEQYQE----- 504
            +  +   +K            K  L     L+E   +   IN     + +  +E     
Sbjct: 387 CEECKEYYEKYLELEEKAVEYNKLTLEYITLLQEKKSIEKNINDLETRINKLLEETKNID 446

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL-- 562
           +  I     E+++    L +   E+     +        +   ++L +L        L  
Sbjct: 447 IESIENSLKEIEEKKKVLENLQKEKIELNKKLGEINSEIKRLKKILDELKEVEGKCPLCK 506

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL- 621
                   +  + Q   Q    Y     ++++  EIEK I ++  + + E+    +  L 
Sbjct: 507 TPIDENKKMELINQHKTQLNNKYTELEEINKKIREIEKDIEKLKKEIDKEENLKTLKTLY 566

Query: 622 HEVHIQIHQIE 632
            E   QI ++E
Sbjct: 567 LEKQSQIEELE 577



 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/271 (7%), Positives = 87/271 (32%), Gaps = 28/271 (10%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            E   +     D+  +++   ++      + + +    +   ++L++  +    ++    
Sbjct: 204 EEKNKKLMEINDKLNKIKKEFEDIEKLFNEWENKKLLYEKFINKLEERKRALELKNQELK 263

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL------QEQ 501
                     + +    R          L  +    E+ L     ++   L      +  
Sbjct: 264 ILEYDLNTVVEARETLNRHKDEYEKYKSLVDEIRKIESRLRELKSHYEDYLKLTKQLEII 323

Query: 502 YQELADI-RYDN--------NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
             ++  +  + N        + L  L + +  +    +    +++ + L  +   E +++
Sbjct: 324 KGDIEKLKEFINKSKYRDDIDNLDTLLNKIKDEIE--RVETIKDLLEEL--KNLNEEIEK 379

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQ------QALALYKRFRLLSRQKEEIEKQIAQVT 606
           +++  R         E  +    +  +      + + L +  + + +   ++E +I ++ 
Sbjct: 380 IEKYKRICEECKEYYEKYLELEEKAVEYNKLTLEYITLLQEKKSIEKNINDLETRINKLL 439

Query: 607 AKG---EAEKTAILISILHEVHIQIHQIESQ 634
            +    + E     +  + E    +  ++ +
Sbjct: 440 EETKNIDIESIENSLKEIEEKKKVLENLQKE 470


>gi|332075798|gb|EGI86265.1| choline binding protein A [Streptococcus pneumoniae GA17570]
          Length = 741

 Score = 44.1 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L ++       +  L++++ +  +      A+ 
Sbjct: 255 ELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLEKEISNLEI--LLGGADP 312

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            D     Q  LA   +   L++++ E+EK +  +  +G+ +      +   E+  +  ++
Sbjct: 313 EDDTAALQNKLAA--KQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDKKADEL 370

Query: 632 ESQEAMIE 639
           +++ A +E
Sbjct: 371 QNKVADLE 378



 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 92/281 (32%), Gaps = 15/281 (5%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             + A      ++    D   K+ +E    +  + + + E   K      K    +    
Sbjct: 25  RAEEAPVASQSKAEKDYDAAVKK-SEAAKKHYEEVKKKAEDAQKKYDEGQKKTVEKAKRE 83

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           +   +++ +  ++    +  Y +   ++ R    K   +   +    +   +   +    
Sbjct: 84  KEASEKIAEATKEVQQAYLAYQQASNESQRKEADKKIKEATQRKDEAEAAFATIRTT--- 140

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNN------ELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                ++  P+ L E  ++  + + +        +   L   L    VE K    E++  
Sbjct: 141 ----IVVPEPSELAETKKKAEEAKAEEKVAKRKYDYATLKVALAKKEVEAKELEIEKLQY 196

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-ALALYKRFRLLSRQKEEI 598
            +          Q         L  A  +     +     +    L  +   L++++ E+
Sbjct: 197 EISTLEQEVATAQHQVDNLKKLLAGADPDDGTEVIEAKLNKGEAELNAKQAELAKKQTEL 256

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           EK +  +  +G+ +      +   E+  +  +++++ A +E
Sbjct: 257 EKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLE 297



 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 67/193 (34%), Gaps = 15/193 (7%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLT 490
           Q    K  TE            + +D+        +      +L  K +  E  +  L  
Sbjct: 246 QAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLEKEISNLEI 305

Query: 491 LI--NHPA-----ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           L+    P      +  +   + A++     EL+KL   L  +   Q     E     L +
Sbjct: 306 LLGGADPEDDTAALQNKLAAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDK 365

Query: 544 R--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
           +       +  L++++ +  +      A+  D     Q  LA   +   L + ++E++  
Sbjct: 366 KADELQNKVADLEKEISNLEI--LLGGADSEDDTAALQNKLA--TKKAELEKTQKELDAA 421

Query: 602 IAQVTAKGEAEKT 614
           + ++   G+ E+T
Sbjct: 422 LNELGPDGDEEET 434


>gi|320170163|gb|EFW47062.1| hypothetical protein CAOG_05006 [Capsaspora owczarzaki ATCC 30864]
          Length = 1323

 Score = 44.1 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 42/125 (33%), Gaps = 3/125 (2%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG--ELLKQLDRQVRDAGLWSATTEANI 571
           +L+ L   L  +  E       ++   +        EL + L+          A+     
Sbjct: 412 DLEALRD-LADELEENHVASERQLQGEIDSLSVRVHELSRALESANETIADQEASIGKYR 470

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             +R        L +R      +  E+  Q   + +     +++   +    V +++ ++
Sbjct: 471 DLLRDLQADMSELRRREVSQQEESRELATQSQSLLSLNMQLQSSASKAHARAVDLELRRL 530

Query: 632 ESQEA 636
           ++ +A
Sbjct: 531 DAMQA 535


>gi|312866121|ref|ZP_07726342.1| exonuclease SbcCD, C subunit [Streptococcus downei F0415]
 gi|311098525|gb|EFQ56748.1| exonuclease SbcCD, C subunit [Streptococcus downei F0415]
          Length = 1067

 Score = 44.1 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 32/292 (10%), Positives = 92/292 (31%), Gaps = 42/292 (14%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD-RLQQLFQKYITEHSGYG 447
             +  S    ++         +  + I  ++ R  +++A  D RL    +++        
Sbjct: 194 LAQKWSQARQEQSQLQAKLDGHFTSQIWTEEEREAFTEATSDQRLALAQERHQYYQDALA 253

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
           +  ++          + +  Q++       ++   +EA     ++      Q++ ++LA 
Sbjct: 254 KAKQEKTEAEKATRQADQAYQTAQKLDGQFQERQAQEARYQTEILEQAEAYQQKQEKLAQ 313

Query: 508 IRYDNNELQKLWSFLFSDFVEQK-YFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGLWSA 565
           + + N+    +   L              ++   L ER   +  L++    ++       
Sbjct: 314 LDFANSLADLVKEELAKQAAVGDLEKRIADLQDDLAERQEKQAPLEKRLSHLQAQESQQE 373

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLS--------------------------------- 592
             + +I ++      A  L K    L                                  
Sbjct: 374 KAQEDIENLTLSLNSAQTLAKVQADLKTTKASLEKLARDQAGLSEREQEVKQARTQIEAD 433

Query: 593 ----RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAMIE 639
               R+  +++  + +V    +++ T  L   L ++     ++ + +EA +E
Sbjct: 434 LVSDRELLDLKNLLQKVQDLVDSDLTKGL-QKLVDLQADRQELSDQREASLE 484



 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/277 (8%), Positives = 75/277 (27%), Gaps = 6/277 (2%)

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
               +D  +  +     A +                                 +      
Sbjct: 245 HQYYQDALAKAKQEKTEAEKATRQADQAYQTAQKLDGQFQERQAQEARYQTEILEQAEAY 304

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
              +++  +  ++ ++ D +++   K         R         +++     L +    
Sbjct: 305 QQKQEKLAQLDFANSLADLVKEELAKQAAVGDLEKRIADLQDDLAERQEKQAPLEKRLSH 364

Query: 473 KGKLSKKPSLREAAL--LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS---DFV 527
                 +    +  +  L   +N    L +   +L   +    +L +  + L     +  
Sbjct: 365 LQAQESQQEKAQEDIENLTLSLNSAQTLAKVQADLKTTKASLEKLARDQAGLSEREQEVK 424

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYK 586
           + +  +  ++           LL+++   V            ++  D ++   Q  A  +
Sbjct: 425 QARTQIEADLVSDRELLDLKNLLQKVQDLVDSDLTKGLQKLVDLQADRQELSDQREASLE 484

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
               L     +++ ++ ++         A L + L E
Sbjct: 485 HLAGLEADLADLQARLKEIKRDQLKLMVAKLQAELEE 521


>gi|296476686|gb|DAA18801.1| myosin, heavy chain 3, skeletal muscle, embryonic [Bos taurus]
          Length = 1929

 Score = 44.1 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 88/273 (32%), Gaps = 22/273 (8%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
              +  I   +   D   ++   N        ++ L+  +++    I+           I+
Sbjct: 1568 QVKSEIDRKMAEKDEEIEQLKRNYQRTVETMQSALDAEVRSRNEAIR-----------IK 1616

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             +++    +   + S   R   +  RH        +  Q  L    L  +  L+E   L 
Sbjct: 1617 KKMEGDLNEIEIQLSHANRQAAETVRHLRSVQGQLKDTQLHLDDA-LRGQEDLKEQ--LA 1673

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +     +LQ + +EL          +K+    L       +    +       ++    
Sbjct: 1674 IVERRANLLQAEVEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLIHTKKKLET 1733

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQ 604
             L QL  +V DA   +   E                 K+ +     L R K+ +E+ +  
Sbjct: 1734 DLAQLQSEVEDASRDARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKD 1793

Query: 605  VTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
            +  + +  +   L      + ++  +I ++ES+
Sbjct: 1794 LQHRLDEAEQLALKGGKKQIQKLETRIRELESE 1826



 Score = 37.6 bits (85), Expect = 6.4,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 82/261 (31%), Gaps = 22/261 (8%)

Query: 380  PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-QKLRYYYSQAIRDRLQQLFQK 438
                  + ++ E       +E            +   D   LR  Y +      +   Q+
Sbjct: 1303 SRSKQAFTQQIEELKRQLEEESKAKSALAHALQSARHDCDLLREQYEEE--QEAKAELQR 1360

Query: 439  YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
             +++ +     W+        +   +       +  +L       EA             
Sbjct: 1361 ALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDSEEQVEAVNAKCASLE-KTK 1419

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            Q    E+ D+  D +    L + L     ++K    +++      +G  E   +L+  ++
Sbjct: 1420 QRLQAEVEDLMVDVDRANSLAAAL-----DKKQRNFDKVLAEWKTKG-EESQAELEASLK 1473

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
            ++   S           +   Q   + +  + L ++  ++ +QIA+              
Sbjct: 1474 ESRSLSTELFKLKNAYEEALDQLETVKRENKNLEQEIADLTEQIAESGKT---------- 1523

Query: 619  SILHEVHIQIHQIESQEAMIE 639
              +HE+     QIE ++A I+
Sbjct: 1524 --IHELEKSRKQIELEKADIQ 1542


>gi|302501324|ref|XP_003012654.1| hypothetical protein ARB_00904 [Arthroderma benhamiae CBS 112371]
 gi|291176214|gb|EFE32014.1| hypothetical protein ARB_00904 [Arthroderma benhamiae CBS 112371]
          Length = 1580

 Score = 44.1 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 3/121 (2%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                 EQ+  L +E  Q+  E    +L  +  RQ  +        +A +  + +  +Q  
Sbjct: 1110 IRAKEEQEAALRQE--QQAQEAETEQLEDETRRQEEELAREKEAAQARLKALEEQVRQG- 1166

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
             + K+ +   +Q+ E E +  +     +  +         E+  Q+  +  +E+  +  G
Sbjct: 1167 KIKKQEQKRRKQQAEQEAREKEAKLAAQRAELEAAQERERELQRQLESLGDEESSSDDEG 1226

Query: 643  K 643
             
Sbjct: 1227 P 1227


>gi|224113909|ref|XP_002332472.1| predicted protein [Populus trichocarpa]
 gi|222832555|gb|EEE71032.1| predicted protein [Populus trichocarpa]
          Length = 1229

 Score = 44.1 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 10/130 (7%)

Query: 512 NNELQKLWSFLFSDFVEQK---YFLPEEIHQRLC------ERGFGELLKQLDRQVRDAGL 562
           + EL++L   L     E K         + Q         E+    L K+++    +   
Sbjct: 561 DRELKELDRKLEQKEAEMKRFTSVDTSVLKQHYDKKVQDLEQEKRLLQKEIEELRYNLAN 620

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
            S+T++     +++ Y Q L + +      ++K++ + Q+ +   K + E    L   + 
Sbjct: 621 ISSTSDDGAKKLKEDYLQKLTVLEAQVAELKKKQDAQAQLLRQKQKSD-EAARRLNEEIQ 679

Query: 623 EVHIQIHQIE 632
            +  Q  Q++
Sbjct: 680 RIKTQKVQLQ 689


>gi|212545020|ref|XP_002152664.1| anucleate primary sterigmata (ApsB), putative [Penicillium
           marneffei ATCC 18224]
 gi|210065633|gb|EEA19727.1| anucleate primary sterigmata (ApsB), putative [Penicillium
           marneffei ATCC 18224]
          Length = 1499

 Score = 44.1 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 89/282 (31%), Gaps = 21/282 (7%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                   K + E+ P       RE      +  D         ++    ++D+ LR   
Sbjct: 583 KRRLAEIVKSMGENRPADSEAGAREEREMWKDMLDAETAAREQAEDENRKLRDEILR--- 639

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                  ++       +E   +GR  +K +         +   +   V        +L E
Sbjct: 640 -------MKAEGIATGSEAGRFGRAGRKGSFISHSTTSERDHDRRLTVPSSTGS--TLVE 690

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             LL     +  + +E   + + +   N E ++L+  +    ++++          + ER
Sbjct: 691 IELLKK--ENAELRREVSVQTSMLTSRNREKERLYQEIEDLKLQRREGGRSIAGDSIFER 748

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVR----QGYQQALALYKRFRLLSRQKEEIEK 600
                  +   +  +    S  ++     +     +   Q   L    + L  Q +E   
Sbjct: 749 SASRAHARSSSRASNGTRESRLSDTERESLEVRNGELRDQVSTLKLENQGLRSQLDEYTA 808

Query: 601 QIAQVTAK--GEAEKTAILISILHEVHIQ-IHQIESQEAMIE 639
           ++  +      + ++    + IL +   Q +   E +EA ++
Sbjct: 809 ELEALDKAYQADVDQAEEELQILQQERDQALQVAEEREAALQ 850


>gi|114578189|ref|XP_001156246.1| PREDICTED: dynactin 1 isoform 7 [Pan troglodytes]
          Length = 1143

 Score = 44.1 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 105 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 164

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 165 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 224

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 225 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 284

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 285 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 344

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 345 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 404

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 405 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 460



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 89  VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 148

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 149 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 208

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 209 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 262

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 263 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 306


>gi|109081258|ref|XP_001092704.1| PREDICTED: cingulin-like 1 [Macaca mulatta]
          Length = 1302

 Score = 44.1 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 93/291 (31%), Gaps = 12/291 (4%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y +    +L      L +   + E    +     +   L           +D+ 
Sbjct: 972  QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEA 1031

Query: 420  L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L  R    Q ++D   +L  K   +        +   +    +   +    +S +  +  
Sbjct: 1032 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERI 1091

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-------QK 530
             +   +   +   L+   A  Q+   +   +   N +L+     L   +         Q 
Sbjct: 1092 SRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQM 1151

Query: 531  YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 E+  RL          QL  +  +  +     + +   +     Q   L  R + 
Sbjct: 1152 EARIAELEDRLESEERDRASLQLSNRRLERKVKELVMQVDDEHLSLT-DQKDQLSLRLKA 1210

Query: 591  LSRQKEEIEKQIAQVTAKGEA-EKTAILISILHE-VHIQIHQIESQEAMIE 639
            + RQ EE E++I ++ +  +  ++       ++E +  Q++ ++    + +
Sbjct: 1211 MKRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLRLKK 1261



 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 85/252 (33%), Gaps = 19/252 (7%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           +++++L   +      ++         +  R+R++   ++  ++H+          +  +
Sbjct: 614 EQKSKLTTEVAELQRQLQLGVKNQQNIKEERERMRANLEELRSQHNKKVEENSTLQQRLE 673

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +     R     L + K+ ++    E   L        + +   +  +  R ++ E   L
Sbjct: 674 ESEGELRKNLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSAKRSEDREKGAL 728

Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLW----SATTEAN 570
              L     + +  L  +  Q    R  ER    L   L  +V              +A 
Sbjct: 729 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 788

Query: 571 IVDVRQGYQQA------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           +  +R+  ++A      LA         +   E+  ++ Q   +    ++  L   + ++
Sbjct: 789 LQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELEQRVAQL 848

Query: 625 HIQIHQIESQEA 636
             QI  ++  EA
Sbjct: 849 QRQIEDLKGDEA 860



 Score = 37.9 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 102/331 (30%), Gaps = 13/331 (3%)

Query: 306  QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
            ++R L      +    D           A+   L       +   +     ED     R 
Sbjct: 699  EIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLR-KRE 757

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK--NCINHIKDQKLRYY 423
               TA +  + E +   D    +  E         R  +E   K    +    +   +  
Sbjct: 758  RELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQ 817

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                +R +L Q   + +   S          + + +            +K    +   L 
Sbjct: 818  AGTEMRVKLLQEENEKLQGRSEELEQRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLE 877

Query: 484  EAALLL------TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            EA +         +    A+  E      ++     E ++L   L  +  +++     + 
Sbjct: 878  EALVQARREEKEAVSARRALENELEAAQRNLSRTTQEQKQLSEKLKEESEQKEQLRRLKN 937

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                     G+ +++L +++ D    S T+   + +    Y++     +    + RQ +E
Sbjct: 938  EMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKE--KNRRELAEMQRQLKE 995

Query: 598  --IEKQIAQVTAKGEAEKTAILISILHEVHI 626
              +E + +++TA    ++  ++   L +   
Sbjct: 996  KTLEAEKSRLTAMKMQDEMRLMEEELRDYQR 1026



 Score = 37.2 bits (84), Expect = 8.4,   Method: Composition-based stats.
 Identities = 12/105 (11%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
               EL  Q +++V +        E +  ++R+  ++   +         +  +++ Q++
Sbjct: 649 ANLEELRSQHNKKVEENSTLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLS 708

Query: 604 QVTAKGEAEK----------TAILISILHEVHIQIHQIESQEAMI 638
           ++  + ++ K             L+    ++   +   E QE ++
Sbjct: 709 EMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLL 753


>gi|222824221|ref|YP_002575795.1| replicative DNA helicase [Campylobacter lari RM2100]
 gi|222539443|gb|ACM64544.1| replicative DNA helicase [Campylobacter lari RM2100]
          Length = 461

 Score = 44.1 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 49/156 (31%), Gaps = 10/156 (6%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L + I           ++    +     Q ++  + +     +      I +   
Sbjct: 12  LERAILSSCIYSEDSFFSISSDIEVNDFSLKAHQDIYKAILACVNAGEPISASFIRKH-- 69

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-------ALALYKRFRLLSRQK 595
           ++   ++L ++      A +     E     +R+            +   K    +S + 
Sbjct: 70  KKIDEQILAEVLATTSIADVSKYAYELREKSIRRQLLNFAYTIPTRVNEDKSISQISDEI 129

Query: 596 -EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            +EI     +V +    + T ++  ++ E   Q   
Sbjct: 130 GKEIFNLTNRVNSNSIKDMTMVMSELMDEFKKQKEA 165


>gi|327291572|ref|XP_003230495.1| PREDICTED: coiled-coil domain-containing protein 102A-like, partial
           [Anolis carolinensis]
          Length = 425

 Score = 44.1 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 78/225 (34%), Gaps = 15/225 (6%)

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    + +  RL+        E        +  +    Q  P Q  ++         K 
Sbjct: 149 EKEQLGKELA-RLKADCGSKEEEEKEKELDNRVASEKESQAAPEQEPVRDP----GSEKV 203

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           P  +E  L+  L+       E + + + +   ++  ++  + L  +          +I  
Sbjct: 204 PKNKEFELMENLLKSKQDGPEFWDQRSAVSVRSSLARQERNRLLWEDASANEDEAAKITA 263

Query: 540 -RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            RL      E  K L ++  D    S   E    ++ Q   +   L K  + + +Q   +
Sbjct: 264 LRLR---LDESQKVLLKEREDKMSLSRNIEKLEAELSQWKVKYEELNKNKQEVLKQLNIL 320

Query: 599 EK----QIAQVTAKGEAEKTAILI--SILHEVHIQIHQIESQEAM 637
           ++    ++ +++   E E  A       L E+  ++ +++++ A 
Sbjct: 321 KEIHQDELGRISEDLEDELGARSSMDKKLAELRSEMERLQAENAA 365


>gi|194215180|ref|XP_001917151.1| PREDICTED: similar to rCG59523 [Equus caballus]
          Length = 4566

 Score = 44.1 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 84/275 (30%), Gaps = 19/275 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1850 QELIRLRAETEQGEQQRQLLEEELARLQHEAAAATQKRQELEAELAKVRAEMEVLLASKA 1909

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +   +          +     ++    ++L +    + +   +
Sbjct: 1910 RAEEESRSTSEKSKQRLEAEASRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1969

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------FLFSDFVEQKYFL 533
              L E   L  +     +  E    L +   +N  L++L            +   Q    
Sbjct: 1970 RVLAEK--LAAIGEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKAD 2027

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             EE   +L +    EL                  E  +   RQ  ++ LAL   F   + 
Sbjct: 2028 IEERLAQLRKASESEL-----------ERQKGLVEDTLRQRRQVEEEILALKVSFEKAAA 2076

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             K E+E ++ ++ +  E    +   + L     Q+
Sbjct: 2077 GKAELELELGRIRSNAEDTLRSKEQAELEARQRQL 2111



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1815 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1874

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1875 RLQHEAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1912



 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 36/312 (11%), Positives = 94/312 (30%), Gaps = 33/312 (10%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+                   P+ D L       +      ++   E  ++      +  
Sbjct: 1260 PELEATKAALKKLRAQAEAQQPMFDALRDELRGAQEVGERLQQRHGERDVEVERWRERVA 1319

Query: 419  KLRYYYSQAIRD---RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +L   +   +     R ++L Q                A  +D K   +++    L   +
Sbjct: 1320 QLLERWQAVLAQTDLRQRELEQLGRQLRYYRESADPLGAWLQDAKRRQEQIQAMVLADSR 1379

Query: 476  LSKKPSLREAALLLTLINHPA-------ILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
              ++   +E ALL  +  H           ++    + D        +     + S   +
Sbjct: 1380 AVREQLRQEKALLEEIERHGEKVEECQRFAKQYINAIKDYELQLVTYKAQLEPVASPAKK 1439

Query: 529  QKYFLPE--------EIHQRLCE---------RGFGELLKQLDRQVRDAGLWSATTE--- 568
             K             ++  R  E         +   E L++++ + R A    A      
Sbjct: 1440 PKVQSGSESVIQEYVDLRTRYSELTTLTSQYIKFISETLRRMEEEERLAEQQRAEERERL 1499

Query: 569  ANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            A +    +  +Q    + + +    ++ +E++++I +  ++G+             +  +
Sbjct: 1500 AEVEAALEKQRQLAEAHAQAKAQAEQEAQELQRRIQEEVSRGKKATVDS-HQQKRSIQEE 1558

Query: 628  IHQI-ESQEAMI 638
            +  + +  EA I
Sbjct: 1559 LQPLRQRSEAEI 1570



 Score = 37.9 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 76/230 (33%), Gaps = 31/230 (13%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            ++    R+ +  +             + +A         +    +  ++ +L       E
Sbjct: 1153 ARECAQRIAEQQKAQAEVEGLGKGVARLSAEAEKVLALPEPSPAAPTLRSELELTLGKLE 1212

Query: 485  --AALLLTLINH--------------PAILQEQYQELAD---IRYDNNELQKLWSFL--F 523
               +L    +                  +L+   ++L +   +     EL+   + L   
Sbjct: 1213 QVRSLSAIYLEKLKTISLVIRSTHGAEEVLKAHEEQLKEAQAVPATLPELEATKAALKKL 1272

Query: 524  SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                E +  + + +   L  RG  E+ ++L ++  +  +        +  + + +Q  LA
Sbjct: 1273 RAQAEAQQPMFDALRDEL--RGAQEVGERLQQRHGERDVEVERWRERVAQLLERWQAVLA 1330

Query: 584  LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
               +  L  R+ E++ +Q+       +      L + L +   +  QI++
Sbjct: 1331 ---QTDLRQRELEQLGRQLRYYRESADP-----LGAWLQDAKRRQEQIQA 1372


>gi|195426702|ref|XP_002061441.1| GK20720 [Drosophila willistoni]
 gi|194157526|gb|EDW72427.1| GK20720 [Drosophila willistoni]
          Length = 2015

 Score = 44.1 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 84/242 (34%), Gaps = 18/242 (7%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +  R   ++ I +                    +  AR    +   +    +S V    S
Sbjct: 1748 ETERDELAEEIAN-------NANKGSLMIDEKRRLEARIATLEEELEEEQSNSEVLLDRS 1800

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-------FSDFVEQK 530
            +K  L+       L N  +  Q+     A +   N EL+   + +           +   
Sbjct: 1801 RKAQLQIEQFSTELANEKSNSQKNENARALLERQNKELKAKLAEIETAQRTKVKATIATL 1860

Query: 531  YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRF 588
                  + ++L   G   LL+Q   +  D  +   T         V Q  +Q   L  R 
Sbjct: 1861 EAKIANLEEQLENEGKERLLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRI 1920

Query: 589  RLLSRQKEEIEKQIA-QVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSG 646
            +LL R  +E E+++  + T K + ++    +    E ++ +I+ ++++     G G  S 
Sbjct: 1921 KLLKRNLDETEEELQKEKTQKRKYQRECEDMIESQEAMNREINSLKTKLRRTGGMGLSSS 1980

Query: 647  RL 648
            RL
Sbjct: 1981 RL 1982


>gi|170026940|gb|ACB05996.1| myosin heavy chain 11 smooth muscle isoform [Homo sapiens]
          Length = 2029

 Score = 44.1 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 94/265 (35%), Gaps = 10/265 (3%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     +     E E        ++ ELE  L      +++++ R    QA R ++ Q  
Sbjct: 900  QEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQM 959

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                 +        +K    +       + ++  ++          +E  LL   I+   
Sbjct: 960  LDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKLSKERKLLEERISDLT 1019

Query: 497  I-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEIHQRLCER--GFGELLK 551
              L E+ ++  ++    N+ + + S L       E+     E++ ++L      F E + 
Sbjct: 1020 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIA 1079

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
             L  Q+ +  +  A  E  +          +A   +     ++  E+E  I+ +    ++
Sbjct: 1080 DLQAQIAELKMQLAKKEEELQAALARLDDEIA---QKNNALKKIRELEGHISDLQEDLDS 1136

Query: 612  EKTAILISILH--EVHIQIHQIESQ 634
            E+ A   +     ++  ++  ++++
Sbjct: 1137 ERAARNKAEKQKRDLGEELEALKTE 1161


>gi|78188397|ref|YP_378735.1| chromosome segregation protein SMC [Chlorobium chlorochromatii
           CaD3]
 gi|78170596|gb|ABB27692.1| Chromosome segregation protein SMC [Chlorobium chlorochromatii
           CaD3]
          Length = 1190

 Score = 44.1 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 72/216 (33%), Gaps = 12/216 (5%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + I + +    ++ +          +   R +      +   +  L    +  +   + 
Sbjct: 143 LKMIEEIISNKSEERLKLFEEAAGITRYKQRRKQTFKLLESTSRDLLRVDDVLAEVEKKV 202

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            + L T +     L+E  + +  +     EL   W  +     + +        + L   
Sbjct: 203 RS-LKTQVRKAERLREIKERIRAL-----ELALAWRSMEELHDKLEPMQRSISKEELINH 256

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ----ALALYKRFRLLSRQKEEIEK 600
                + +++   ++  L     E  + ++++  ++       L K+   +  Q++ +  
Sbjct: 257 EQSATIARMESASQEMELTLLKQEGALAELQKVVRESNQKIHELEKQQLYVEEQQKTLTA 316

Query: 601 QIAQVTAKG--EAEKTAILISILHEVHIQIHQIESQ 634
            + ++ A    + EK+  L     E+  ++   +S 
Sbjct: 317 DVGRMQAARHRKEEKSRELQQQDLELRQRLEPAKST 352


>gi|327264633|ref|XP_003217117.1| PREDICTED: myosin-10-like isoform 1 [Anolis carolinensis]
          Length = 1976

 Score = 44.1 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 103/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 876  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 935

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 936  ERNQMLQNEKKKMQTHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 995

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              L+E  L+         + E   +LA+       L KL     +    +E++    E+ 
Sbjct: 996  KFLKEKKLME------DRISECTSQLAEEEEKAKNLTKLKNKQEMMITDLEERLKKEEKT 1049

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +      + 
Sbjct: 1050 RQELEKSKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE---EELQAAIARGDDEAVQK 1106

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1107 NNALKLIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTE 1154


>gi|168489392|ref|ZP_02713591.1| pneumococcal surface protein A [Streptococcus pneumoniae SP195]
 gi|183572047|gb|EDT92575.1| pneumococcal surface protein A [Streptococcus pneumoniae SP195]
          Length = 746

 Score = 44.1 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L ++       +  L++++ +  +      A+ 
Sbjct: 260 ELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLEKEISNLEI--LLGGADP 317

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            D     Q  LA   +   L++++ E+EK +  +  +G+ +      +   E+  +  ++
Sbjct: 318 EDDTAALQNKLAA--KQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDKKADEL 375

Query: 632 ESQEAMIE 639
           +++ A +E
Sbjct: 376 QNKVADLE 383



 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 92/281 (32%), Gaps = 15/281 (5%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             + A      ++    D   K+ +E    +  + + + E   K      K    +    
Sbjct: 30  RAEEAPVASQSKAEKDYDAAVKK-SEAAKKHYEEVKKKAEDAQKKYDEGQKKTVEKAKRE 88

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           +   +++ +  ++    +  Y +   ++ R    K   +   +    +   +   +    
Sbjct: 89  KEASEKIAEATKEVQQAYLAYQQASNESQRKEADKKIKEATQRKDEAEAAFATIRTT--- 145

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNN------ELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                ++  P+ L E  ++  + + +        +   L   L    VE K    E++  
Sbjct: 146 ----IVVPEPSELAETKKKAEEAKAEEKVAKRKYDYATLKVALAKKEVEAKELEIEKLQY 201

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-ALALYKRFRLLSRQKEEI 598
            +          Q         L  A  +     +     +    L  +   L++++ E+
Sbjct: 202 EISTLEQEVATAQHQVDNLKKLLAGADPDDGTEVIEAKLNKGEAELNAKQAELAKKQTEL 261

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           EK +  +  +G+ +      +   E+  +  +++++ A +E
Sbjct: 262 EKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLE 302



 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 67/193 (34%), Gaps = 15/193 (7%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLT 490
           Q    K  TE            + +D+        +      +L  K +  E  +  L  
Sbjct: 251 QAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLEKEISNLEI 310

Query: 491 LI--NHPA-----ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           L+    P      +  +   + A++     EL+KL   L  +   Q     E     L +
Sbjct: 311 LLGGADPEDDTAALQNKLAAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDK 370

Query: 544 R--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
           +       +  L++++ +  +      A+  D     Q  LA   +   L + ++E++  
Sbjct: 371 KADELQNKVADLEKEISNLEI--LLGGADSEDDTAALQNKLA--TKKAELEKTQKELDAA 426

Query: 602 IAQVTAKGEAEKT 614
           + ++   G+ E+T
Sbjct: 427 LNELGPDGDEEET 439


>gi|156120319|ref|NP_001095305.1| myosin-3 [Bos taurus]
 gi|151555762|gb|AAI49228.1| MYH3 protein [Bos taurus]
          Length = 1940

 Score = 44.1 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 88/273 (32%), Gaps = 22/273 (8%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
              +  I   +   D   ++   N        ++ L+  +++    I+           I+
Sbjct: 1568 QVKSEIDRKMAEKDEEIEQLKRNYQRTVETMQSALDAEVRSRNEAIR-----------IK 1616

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             +++    +   + S   R   +  RH        +  Q  L    L  +  L+E   L 
Sbjct: 1617 KKMEGDLNEIEIQLSHANRQAAETVRHLRSVQGQLKDTQLHLDDA-LRGQEDLKEQ--LA 1673

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +     +LQ + +EL          +K+    L       +    +       ++    
Sbjct: 1674 IVERRANLLQAEVEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLIHTKKKLET 1733

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQ 604
             L QL  +V DA   +   E                 K+ +     L R K+ +E+ +  
Sbjct: 1734 DLAQLQSEVEDASRDARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKD 1793

Query: 605  VTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
            +  + +  +   L      + ++  +I ++ES+
Sbjct: 1794 LQHRLDEAEQLALKGGKKQIQKLETRIRELESE 1826



 Score = 37.6 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 82/261 (31%), Gaps = 22/261 (8%)

Query: 380  PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-QKLRYYYSQAIRDRLQQLFQK 438
                  + ++ E       +E            +   D   LR  Y +      +   Q+
Sbjct: 1303 SRSKQAFTQQIEELKRQLEEESKAKSALAHALQSARHDCDLLREQYEEE--QEAKAELQR 1360

Query: 439  YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
             +++ +     W+        +   +       +  +L       EA             
Sbjct: 1361 ALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDSEEQVEAVNAKCASLE-KTK 1419

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            Q    E+ D+  D +    L + L     ++K    +++      +G  E   +L+  ++
Sbjct: 1420 QRLQAEVEDLMVDVDRANSLAAAL-----DKKQRNFDKVLAEWKTKG-EESQAELEASLK 1473

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
            ++   S           +   Q   + +  + L ++  ++ +QIA+              
Sbjct: 1474 ESRSLSTELFKLKNAYEEALDQLETVKRENKNLEQEIADLTEQIAESGKT---------- 1523

Query: 619  SILHEVHIQIHQIESQEAMIE 639
              +HE+     QIE ++A I+
Sbjct: 1524 --IHELEKSRKQIELEKADIQ 1542


>gi|119602580|gb|EAW82174.1| plectin 1, intermediate filament binding protein 500kDa, isoform
            CRA_d [Homo sapiens]
          Length = 2483

 Score = 44.1 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 92/275 (33%), Gaps = 14/275 (5%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH---IKD 417
               +       ++L  E+        + E E  S     E            N    ++D
Sbjct: 2185 DHQKNLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRD 2244

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +     + Q   ++++Q+ ++            +      +     + L +  L +   +
Sbjct: 2245 KDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQA 2304

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             + + R  A    L     + QEQ + L + +      +++   L     E + F     
Sbjct: 2305 VQEATRLKAEAELLQQQKELAQEQARRLQEDK------EQMAQQL---AEETQGFQRTLE 2355

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             +R  +       ++L  +V +     A  E +    R+  ++      R  L +++K  
Sbjct: 2356 AERQRQLEMSAEAERLKLRVAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVT 2415

Query: 598  IEK--QIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            + +  +I +  +  +AE+    I+ L     ++ Q
Sbjct: 2416 LVQTLEIQRQQSDHDAERLREAIAELEREKEKLQQ 2450



 Score = 37.2 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 45/153 (29%), Gaps = 16/153 (10%)

Query: 497  ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            +  +  +        + ELQ+L +       ++     E    R+      +L  +++ +
Sbjct: 2177 LRLQLEETDHQKNLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAE 2236

Query: 557  VRDAGLWSATT-------------EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEK 600
             R   L                  +      R       A   R      L++Q+   EK
Sbjct: 2237 NRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEK 2296

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             + +     +        + L +   ++ Q ++
Sbjct: 2297 MLKEKMQAVQEATRLKAEAELLQQQKELAQEQA 2329


>gi|110669023|ref|YP_658834.1| seryl-tRNA synthetase [Haloquadratum walsbyi DSM 16790]
 gi|121684671|sp|Q18FL9|SYS_HALWD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|109626770|emb|CAJ53238.1| serine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 460

 Score = 44.1 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 40/88 (45%)

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            +LL++    +R A      T+ N+  +    Q+      R   L  ++ +I  +I ++ 
Sbjct: 4   RQLLRKNPDAIRGALDEKGVTDVNLDQILTLDQEWRERKARGDELRHERNQISSKIGKLK 63

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
           A G+ +  +  I+   E+  ++ +IE +
Sbjct: 64  AAGDEDAASEAIAQSQELKNELEEIERE 91


>gi|73980493|ref|XP_540222.2| PREDICTED: similar to dynactin 1 isoform 2 isoform 1 [Canis
           familiaris]
          Length = 1146

 Score = 44.1 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 105 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 164

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 165 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 224

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 225 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 284

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 285 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 344

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 345 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 404

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 405 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 460



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 89  VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 148

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 149 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 208

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 209 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 262

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 263 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 306


>gi|332882387|ref|ZP_08450015.1| MutS2 family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679771|gb|EGJ52740.1| MutS2 family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 855

 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 40/86 (46%)

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           + L +   DA      + A I +  +  ++A A  ++ R + ++ ++ +K +  +  + E
Sbjct: 590 EILRKAKEDAEQLLRESNAKIENTIKTIREAQAEKEKTRNVRQELDDFKKTLDDIEKQHE 649

Query: 611 AEKTAILISILHEVHIQIHQIESQEA 636
           A+K    +  L E   +  + + ++A
Sbjct: 650 ADKITRKMQQLQERKKRQAERKEKKA 675


>gi|258405273|ref|YP_003198015.1| SMC domain-containing protein [Desulfohalobium retbaense DSM 5692]
 gi|257797500|gb|ACV68437.1| SMC domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 1163

 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 85/289 (29%), Gaps = 24/289 (8%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            D  +R   +TA  +  + +       W+                    + N  + ++   
Sbjct: 730  DEQVRLERETATAQHRLTAAEEARSAWQASWGQAMQELGLPEDATPETVHNFFSDLETYL 789

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R   +  +R R++ + +             ++ A         Q + +           
Sbjct: 790  SRANAADGLRKRIEGIRRDSQELERDVASLVERTAPDLAAIPVDQAVER--------LNG 841

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               RE  L  T+ ++   +    +E+   R   +   +  + L       +      I +
Sbjct: 842  QLQRERDLATTVAHYQERIASTQEEIESARIARDAASRELAALCELAGCTEAEELPGIEK 901

Query: 540  RLC-----ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            R       E+  G  L +L        +     E    D  +   +  +  +    L  +
Sbjct: 902  RWQEHRTLEQNKGAALDELGEIAAATDVEELIAEVAAEDPDELPARIQSCDEELDRLDGE 961

Query: 595  KE-------EIEKQIAQV----TAKGEAEKTAILISILHEVHIQIHQIE 632
             E       E+ ++  ++     A  +AE+    ++ +  +  +  Q+ 
Sbjct: 962  IEHQSAQAGELRREFREMDGRDEAARKAEEAQATLATIRRLAERYAQLR 1010


>gi|224076144|ref|XP_002192937.1| PREDICTED: cut-like homeobox 1 [Taeniopygia guttata]
          Length = 1535

 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 29/276 (10%), Positives = 93/276 (33%), Gaps = 17/276 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + +   +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 105 DPVPALDLGQQLQLNVQRMHDIETENQKIRETLEEYNKEFAEVKNQEVTIKALKEKIREY 164

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     +A          
Sbjct: 165 EQTLKNQAENIALEKEQKLQNDFAEKERKLQETQMSTASKLEEAEHKVQALQTALEKTRT 224

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK-- 551
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 225 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANKSLQLATQ 284

Query: 552 -----QLDRQV-----RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
                 +++ +         +  A  E  I  + +  Q+      + R  S  Q  ++E+
Sbjct: 285 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQGSLTKLRENSSSQISQLEQ 344

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE 635
           Q+    +  +  E+     +   EV  +++ ++S E
Sbjct: 345 QLTAKNSTLKQLEEKLKGQADYEEVKKELNILKSME 380


>gi|148992707|ref|ZP_01822350.1| pneumococcal surface protein A [Streptococcus pneumoniae SP9-BS68]
 gi|147928433|gb|EDK79448.1| pneumococcal surface protein A [Streptococcus pneumoniae SP9-BS68]
          Length = 746

 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L ++       +  L++++ +  +      A+ 
Sbjct: 260 ELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLEKEISNLEI--LLGGADP 317

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            D     Q  LA   +   L++++ E+EK +  +  +G+ +      +   E+  +  ++
Sbjct: 318 EDDTAALQNKLAA--KQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDKKADEL 375

Query: 632 ESQEAMIE 639
           +++ A +E
Sbjct: 376 QNKVADLE 383



 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 92/281 (32%), Gaps = 15/281 (5%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             + A      ++    D   K+ +E    +  + + + E   K      K    +    
Sbjct: 30  RAEEAPVASQSKAEKDYDAAVKK-SEAAKKHYEEVKKKAEDAQKKYDEGQKKTVEKAKRE 88

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           +   +++ +  ++    +  Y +   ++ R    K   +   +    +   +   +    
Sbjct: 89  KEASEKIAEATKEVQQAYLAYQQASNESQRKEADKKIKEATQRKDEAEAAFATIRTT--- 145

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNN------ELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                ++  P+ L E  ++  + + +        +   L   L    VE K    E++  
Sbjct: 146 ----IVVPEPSELAETKKKAEEAKAEEKVAKRKYDYATLKVALAKKEVEAKELEIEKLQY 201

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-ALALYKRFRLLSRQKEEI 598
            +          Q         L  A  +     +     +    L  +   L++++ E+
Sbjct: 202 EISTLEQEVATAQHQVDNLKKLLAGADPDDGTEVIEAKLNKGEAELNAKQAELAKKQTEL 261

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           EK +  +  +G+ +      +   E+  +  +++++ A +E
Sbjct: 262 EKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLE 302



 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 15/193 (7%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLT 490
           Q    K  TE            + +D+        +      +L  K +  E  +  L  
Sbjct: 251 QAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLEKEISNLEI 310

Query: 491 LI--NHPA-----ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           L+    P      +  +   + A++     EL+KL   L  +   Q     E     L +
Sbjct: 311 LLGGADPEDDTAALQNKLAAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDK 370

Query: 544 R--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
           +       +  L++++ +  +      A+  D     Q  LA   +   L + ++E++  
Sbjct: 371 KADELQNKVADLEKEISNLEI--LLGGADSEDDTAALQNKLA--TKKAELEKTQKELDAA 426

Query: 602 IAQVTAKGEAEKT 614
           + ++   G+ E+ 
Sbjct: 427 LNELGPDGDEEEL 439


>gi|73980479|ref|XP_866178.1| PREDICTED: similar to dynactin 1 isoform 2 isoform 3 [Canis
           familiaris]
          Length = 1141

 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 105 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 164

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 165 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 224

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 225 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 284

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 285 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 344

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 345 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 404

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 405 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 460



 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 89  VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 148

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 149 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 208

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 209 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 262

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 263 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 306


>gi|73960791|ref|XP_863529.1| PREDICTED: similar to CDC42-binding protein kinase alpha isoform B
           isoform 3 [Canis familiaris]
          Length = 1654

 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 49/124 (39%), Gaps = 15/124 (12%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQ 579
                        +    L  +   E ++ L +Q+R++       E       ++   ++
Sbjct: 372 LQYSTADGPLTASK---DLEIKTLKEEIENLRKQIRESSHLEQQLEEANSVRRELDDAFR 428

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQ 630
           Q  A  K+ R L +++EE+ K++ Q + + + +   +          +    E++ ++ +
Sbjct: 429 QIKAYEKQIRTLQQEREELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTE 488

Query: 631 IESQ 634
           + +Q
Sbjct: 489 LHTQ 492


>gi|73958797|ref|XP_862291.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM2
            isoform 4 [Canis familiaris]
          Length = 1938

 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 877  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 936

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 937  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 996

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 997  LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1056

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1057 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1113

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1114 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1154


>gi|40788305|dbj|BAA31594.2| KIAA0619 protein [Homo sapiens]
          Length = 1428

 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 862  MSEKQLKQENNHLMEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 921

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 922  ELKEECEEKTKLGKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 981

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 982  EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 1033

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 1034 NKLKD--VQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1091

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1092 NDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1136


>gi|322801429|gb|EFZ22090.1| hypothetical protein SINV_05404 [Solenopsis invicta]
          Length = 1769

 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 43/345 (12%), Positives = 108/345 (31%), Gaps = 37/345 (10%)

Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF-IRCYGKTAFEKLI 375
           I      D        +   L+       N+        G  PDS       +     L 
Sbjct: 460 ISALSQTDKRIQILEEENARLIQTIDDMKNQSTLSHSPPGISPDSNNATRKLQDEINTLT 519

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             +  L   L   +         +        L+  +  ++ +K      +AI+D+L   
Sbjct: 520 KRNCELESQLKSLDVPRELRTLDNGDMTKFRELEKLVRCLRSEKE-----EAIKDKLDAQ 574

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL---- 491
            +  + +        ++     +    S +L +    K KLS++   +E  L + +    
Sbjct: 575 EKLKLQDKELKDALTQRKLAMAEYTEVSDKLSELRQQKQKLSRQVRDKEEELEVAMQKVD 634

Query: 492 -INHP-----AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            + H       + +E    + +   + ++ +KL      ++ +Q     E+I QR     
Sbjct: 635 TLRHDIRKAEKLRRELENRIDEAMAETSKERKLRER-SEEYCKQMQEETEKIRQRSVGND 693

Query: 546 FG-------ELLKQLDRQVRDAGLWSATTEANIV-----DVRQGYQQALALYKRFRLLSR 593
                    + + +L  +V    +               ++R   +Q      R  LL R
Sbjct: 694 ASANHALATQEINRLKAEVEKLEVQYNENLTQQQGRFNLEIRSLQEQLHEAETRRELLER 753

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           + +  ++++     +   +    +         ++++   +E ++
Sbjct: 754 EVQLTKEKLDAARLENITDSEETI--------NELNRRHEREKIM 790


>gi|319790440|ref|YP_004152073.1| SMC domain protein [Thermovibrio ammonificans HB-1]
 gi|317114942|gb|ADU97432.1| SMC domain protein [Thermovibrio ammonificans HB-1]
          Length = 532

 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 66/217 (30%), Gaps = 18/217 (8%)

Query: 424 YSQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Y + +      Q+  Q    E        ++           + L+   +   K  +   
Sbjct: 143 YREKLSRLEAAQKELQARERELDLLKFQVQELEEALPLLEQEEELLNLKISVSKAQELKE 202

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           LRE AL        +  ++    L+          ++   L + + E +     +I + L
Sbjct: 203 LREEALYRLYTAENSAFEQIGSVLSKFE-SIGLFPEIAERLSNIYYELESV-ISQIEREL 260

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE-- 599
                   L +++ ++             + D++   + A     R   L  + EE++  
Sbjct: 261 EPPDTDFTLDEIEERLYQIERLKRKYGNTLQDIKSFLETAKERLARLENLDFEIEELQSS 320

Query: 600 ------------KQIAQVTAKGEAEKTAILISILHEV 624
                        ++++   KG  E    ++    E+
Sbjct: 321 LEAVKGELKEAALKLSEARKKGARELERKVLKAFKEL 357


>gi|298368937|ref|ZP_06980255.1| replicative DNA helicase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282940|gb|EFI24427.1| replicative DNA helicase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 468

 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 54/177 (30%), Gaps = 12/177 (6%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 +    L       E ++L  L+   A        +    +  +E + ++  + +
Sbjct: 8   PSEDREVSALSLPPHSMEAEQSVLGGLLLENAAWDRIADIVNGEDFYRHEHRLIFRVIAT 67

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
              E +      + + L         ++L+       L S           + Y + +  
Sbjct: 68  LINESRPADVITVQEALERN------EELEAAGGFNYLISLAQNTPSAANIRRYAEIV-- 119

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
             R R + RQ  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 120 --RERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 172


>gi|295109572|emb|CBL23525.1| Sulfate permease and related transporters (MFS superfamily)
           [Ruminococcus obeum A2-162]
          Length = 716

 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 19/158 (12%)

Query: 488 LLTLINHPAILQEQYQELADIR--YDNNELQKLWSF---LFSDFVEQKYFLPEEIHQRLC 542
           L  L +H  +  E+   L +    +    +Q+L      +     +          +RL 
Sbjct: 564 LAELRSHSHLPAEEEDTLEEFAWAFGKETVQELEQATHTIIEHLHQMPD------IERLS 617

Query: 543 ERGFGELLKQLDRQ-VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
           + G  E  +        D        E +I ++ +       ++K  R +    E+   +
Sbjct: 618 DEGIKEHFESWHTLGALDEDEILHRIELHIDELPE------EMHKEHRHIVELIEKRRTR 671

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           I +   +   E  A L      +  ++ + ++ EA+ +
Sbjct: 672 IREKVLEEHPELAARLEQNRIRLEKRLEK-QNPEALRK 708


>gi|255013436|ref|ZP_05285562.1| endopeptidase Clp ATP-binding chain B [Bacteroides sp. 2_1_7]
 gi|298376776|ref|ZP_06986731.1| ATP-dependent chaperone protein ClpB [Bacteroides sp. 3_1_19]
 gi|298266654|gb|EFI08312.1| ATP-dependent chaperone protein ClpB [Bacteroides sp. 3_1_19]
          Length = 862

 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 21/213 (9%), Positives = 70/213 (32%), Gaps = 12/213 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++        +  +  +++    K +   K  +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQTVIVDEPSELDTISILRGLKEKYENHHKVRIKDDAIISAVQLST 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S                +          +   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAARLRLQIDSVPESLDEVSRRIKQLEIEREAIKRENDKSKL 436

Query: 556 QVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +  +  +     E      + Q  ++ +   ++ ++     E ++ +  +   +G+  K 
Sbjct: 437 EQLNKEIADLKEEETKQKAQWQSEKEQINKIQQNKI---DIENLKFEADKAEREGDYGKV 493

Query: 615 AILI--------SILHEVHIQIHQIESQEAMIE 639
           A +           + EV  ++  ++   AMI+
Sbjct: 494 AEIRYGKIKQKEEEIREVQAKLKTMQGAAAMIK 526



 Score = 37.6 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 71/271 (26%), Gaps = 34/271 (12%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + +  +DM              +    +   +      I        
Sbjct: 220 RIVRGDVPENLKSKQIFSLDMGALIAGAKYKGEFEERLKAVVNEVTKSEGEI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      +++ P+ L                   +   L   +             R+ +
Sbjct: 328 ERRFQTVIVDEPSELDTI---------------SILRGLKEKYENHHKV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++   R + D  L     +       +   Q  ++ +    +SR+ +++E +  
Sbjct: 366 DAIISAVQLSTRYITDRFLPDKAIDLMDEAAARLRLQIDSVPESLDEVSRRIKQLEIERE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +  + +  K   L   + ++  +  + ++Q
Sbjct: 426 AIKRENDKSKLEQLNKEIADLKEEETKQKAQ 456


>gi|218130541|ref|ZP_03459345.1| hypothetical protein BACEGG_02130 [Bacteroides eggerthii DSM 20697]
 gi|217986885|gb|EEC53216.1| hypothetical protein BACEGG_02130 [Bacteroides eggerthii DSM 20697]
          Length = 864

 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 69/212 (32%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++    +      +  +++    + +      +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVMVNEPDTLSTISILRGLKERYENHHHVRIKDDAIIAAVELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      +     +          +   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDRPKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           +     L     +      +  +Q    L  + +    + E ++ +  +   +G+  K  
Sbjct: 437 EQIGKELAELKEQEKSYKAK--WQSEKTLVNKIQQNKIEIENLKFEADKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L   + E   ++H+++  +AMI+
Sbjct: 495 EIRYGKLQALNQEIEETQQKLHEMQGDKAMIK 526



 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 70/264 (26%), Gaps = 34/264 (12%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + +  +DM              +    +   +K     I        
Sbjct: 220 RILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERLKAVINEVKKSEGDI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E    + ++N P  L                   +   L   +    +        R+ +
Sbjct: 328 ERRFQIVMVNEPDTLSTI---------------SILRGLKERYENHHHV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + D  L     +       +   +  ++ +    +SR+ +++E +  
Sbjct: 366 DAIIAAVELSNRYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIERE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQ 627
            +  + +  K   +   L E+  Q
Sbjct: 426 AIKRENDRPKLEQIGKELAELKEQ 449


>gi|149019238|ref|ZP_01834600.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931108|gb|EDK82087.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP23-BS72]
          Length = 1179

 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E  +E A +R D   L+ L   L       +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAEEEASLRSDEVSLKNLQDELARLTERLEAIKSQGEQARIQEQGLSLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  +  + +G  QA      +R   ++ +K  +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEELNRLSEGEWQADKEKCQERLTTITSEKNNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 833


>gi|89892775|ref|YP_516262.1| hypothetical protein DSY0029 [Desulfitobacterium hafniense Y51]
 gi|89332223|dbj|BAE81818.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 468

 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 63/453 (13%), Positives = 129/453 (28%), Gaps = 73/453 (16%)

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           +Y  S    G  + F+    G SF E+V  L  + G    V  P  +KK++ +       
Sbjct: 49  WYDHSAESGGYAIDFVRQFYGLSFPEAVTIL--LGGEQGEVYRPASQKKQEPKQPF---- 102

Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181
                    +L N        Y           E+                         
Sbjct: 103 ---------ALPNPHSDMRRVYAYLTKTRLIDREVVSYFAR------------------- 134

Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET-I 240
               A LL +    +    +  +  +F      G       R L    +    N      
Sbjct: 135 ----AKLLYESCEKSKDGMKEYHNAVFVGYDENGVPHHAHKRGLYTEGTGFKGNVDSCDP 190

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS---LCQAGVQ---NV 294
            +                           +S+ + + E  +D+LS   L     Q    V
Sbjct: 191 AYSFHHI---------------------GTSNRLFVFEAPIDLLSYITLHPKDWQNHSYV 229

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
                +     ++  L      +VLC D D+ G+ A+ K  DL+L   +  +R   V   
Sbjct: 230 ALCGVSEYAMLKMLELHPNLNHVVLCLDHDEAGIEASEKYHDLLLEKGVSCDRDLSVH-- 287

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
             +D +  I+                L+     RE    +       +    +  + +  
Sbjct: 288 --KDWNEDIKANHGLPAIPAEEHPQHLIRDEICRELTETAMTVKSNCSA---NTLSALLM 342

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                L +       + L+++ +  +   +   R    +      +       ++   +G
Sbjct: 343 KALSYLHWGQFSEADECLREICRLSVAAAAREYRQMDHSRDISAVQSRLHSGFRTYENRG 402

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            L  +  L E+ ++        +  ++ ++LA+
Sbjct: 403 HLKTRLDLLESDIMALRGFERVVAADEKEKLAE 435


>gi|288559239|sp|P0CD63|Y5729_DICDI RecName: Full=J domain-containing protein DDB_G0295729
          Length = 1346

 Score = 44.1 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
             L+++     +   E+     ++I + +  R   +L ++++R            +    
Sbjct: 586 EALKRVSDEALAREAERNPVNHQKIIEAMR-REQEKLKEEIERLKEFTRQRDFERQLEFE 644

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHEVHIQIHQI 631
             ++   Q     +R + + R KEE   ++ ++  + E  +   L I    E+  +I +I
Sbjct: 645 RQKEIEHQ--KEIERQKEIERLKEE--NRLKEIEHQREIHRQKELEIQREIELQKEIERI 700

Query: 632 ESQE 635
             +E
Sbjct: 701 NQEE 704


>gi|220905732|ref|YP_002481043.1| replicative DNA helicase [Cyanothece sp. PCC 7425]
 gi|219862343|gb|ACL42682.1| replicative DNA helicase [Cyanothece sp. PCC 7425]
          Length = 1272

 Score = 44.1 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 3/117 (2%)

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
              +L  +    E A+L  ++  P  +      L    +  +  Q+++    +   +   
Sbjct: 9   AADRLPPQNVEAEEAILGGILLDPEAIGRVADILRPEAFYLSAHQEIYRAALALNAQGSP 68

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                I   L ++   +LL ++  Q + A L   T  A  +D      +   L ++ 
Sbjct: 69  TDLMCIAAWLQDQ---DLLAKVGGQSKLAQLVDRTVSAVNIDQYAQLIKDKYLRRQL 122


>gi|92091586|ref|NP_001035203.1| myosin-11 isoform SM1B [Homo sapiens]
 gi|46486992|gb|AAS98910.1| smooth muscle myosin heavy chain isoform SM1 [Homo sapiens]
          Length = 1979

 Score = 44.1 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 94/265 (35%), Gaps = 10/265 (3%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     +     E E        ++ ELE  L      +++++ R    QA R ++ Q  
Sbjct: 900  QEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQM 959

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                 +        +K    +       + ++  ++          +E  LL   I+   
Sbjct: 960  LDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKLSKERKLLEERISDLT 1019

Query: 497  I-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEIHQRLCER--GFGELLK 551
              L E+ ++  ++    N+ + + S L       E+     E++ ++L      F E + 
Sbjct: 1020 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIA 1079

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
             L  Q+ +  +  A  E  +          +A   +     ++  E+E  I+ +    ++
Sbjct: 1080 DLQAQIAELKMQLAKKEEELQAALARLDDEIA---QKNNALKKIRELEGHISDLQEDLDS 1136

Query: 612  EKTAILISILH--EVHIQIHQIESQ 634
            E+ A   +     ++  ++  ++++
Sbjct: 1137 ERAARNKAEKQKRDLGEELEALKTE 1161


>gi|317474140|ref|ZP_07933417.1| ATP-dependent chaperone ClpB [Bacteroides eggerthii 1_2_48FAA]
 gi|316909711|gb|EFV31388.1| ATP-dependent chaperone ClpB [Bacteroides eggerthii 1_2_48FAA]
          Length = 864

 Score = 44.1 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 69/212 (32%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++    +      +  +++    + +      +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVMVNEPDTLSTISILRGLKERYENHHHVRIKDDAIIAAVELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      +     +          +   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDRPKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           +     L     +      +  +Q    L  + +    + E ++ +  +   +G+  K  
Sbjct: 437 EQIGKELAELKEQEKSYKAK--WQSEKTLVNKIQQNKIEIENLKFEADKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L   + E   ++H+++  +AMI+
Sbjct: 495 EIRYGKLQALNQEIEETQQKLHEMQGDKAMIK 526



 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 70/264 (26%), Gaps = 34/264 (12%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + +  +DM              +    +   +K     I        
Sbjct: 220 RILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERLKAVINEVKKSEGDI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E    + ++N P  L                   +   L   +    +        R+ +
Sbjct: 328 ERRFQIVMVNEPDTLSTI---------------SILRGLKERYENHHHV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + D  L     +       +   +  ++ +    +SR+ +++E +  
Sbjct: 366 DAIIAAVELSNRYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIERE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQ 627
            +  + +  K   +   L E+  Q
Sbjct: 426 AIKRENDRPKLEQIGKELAELKEQ 449


>gi|302872415|ref|YP_003841051.1| transcriptional regulator, TrmB [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575274|gb|ADL43065.1| transcriptional regulator, TrmB [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 564

 Score = 44.1 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 32/70 (45%)

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E A++ ++I +  ++QE  + L+   + N  L  ++  + S +  +       + + 
Sbjct: 19  EEAEKAVVGSMIINQDVIQEVEKVLSKEDFYNANLSIIFEAIISLYKSKSPVDIITVTEE 78

Query: 541 LCERGFGELL 550
           L +R   E++
Sbjct: 79  LKKRNLLEVV 88


>gi|187956888|gb|AAI58018.1| Cdc42bpa protein [Mus musculus]
          Length = 1732

 Score = 44.1 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 47/107 (43%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV +        E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKSLKEEIEKLRKQVAEVNHLEQQLEEANSVRRELDDAFRQIKASEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           E+ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 ELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|170043575|ref|XP_001849458.1| myosin heavy chain [Culex quinquefasciatus]
 gi|167866864|gb|EDS30247.1| myosin heavy chain [Culex quinquefasciatus]
          Length = 1345

 Score = 44.1 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 95/314 (30%), Gaps = 25/314 (7%)

Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER 401
                           D +   +       +  +  SL  +    ++E + R     + R
Sbjct: 250 QKMELDRRCKEQEEELD-EMAGQIQLLEQAKLRLEMSLETMRKDARKEAQQRDDELEEVR 308

Query: 402 AELEIHLKNCINHIKDQKL-RYYYSQA---IRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
                 +K+    ++ +   R    +    +  RL  L  +   E +      +K  R  
Sbjct: 309 GSSYKKIKSLECQLEQEHEERTLLLREKHDLERRLNNLEDQDRVERAAEEAASQKLKRDL 368

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--------ILQEQYQELADIR 509
            +     R  QS L + K            L   +            + Q    EL D++
Sbjct: 369 RKYKALLRDAQSQLERAKSDSAGKALIRQ-LRNQLEDAESARSAAVKVRQVAESELQDVQ 427

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               E Q+   F   +          E+  ++ E    E + +L ++        ++ +A
Sbjct: 428 LMLEEAQR-ARFDSEERATAAQRDRAELQAQIDEN--DEEMAELMKKYSATVKQLSSEQA 484

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL----HEVH 625
            I D      +   L    + L  Q  ++  ++  V   G++  +      L     E+ 
Sbjct: 485 MITDYELKISE---LESEKKSLKEQISDLTSRLESVENIGDSSTSIQ-FKRLELRTKELE 540

Query: 626 IQIHQIESQEAMIE 639
            ++   ++  A +E
Sbjct: 541 SRLEFEQATRARME 554



 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 82/241 (34%), Gaps = 36/241 (14%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           L+ L ++  + ++   +  +K          S R  + +  +    K   + E   +   
Sbjct: 150 LRMLLEEQNSRNNLLEKRQRKFDSECQALQDSARQEKQAKERLTREKDVLIAEKFTIEQT 209

Query: 492 INHPAILQEQYQE--------LADIRYDNNELQKLWS------FLFSDFVEQKY-FLPEE 536
           ++   +  E  +E        L ++ +     +++         L     EQ+       
Sbjct: 210 LSDVRLELELKEEKYSALQRELEEMTFGGGTEEEIAQLKRQKMELDRRCKEQEEELDEMA 269

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR--------QGYQQALALYKRF 588
              +L E+    L   L+   +DA   +   +  + +VR            Q    ++  
Sbjct: 270 GQIQLLEQAKLRLEMSLETMRKDARKEAQQRDDELEEVRGSSYKKIKSLECQLEQEHEER 329

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS-------------ILHEVHIQIHQIESQE 635
            LL R+K ++E+++  +  +   E+ A   +             +L +   Q+ + +S  
Sbjct: 330 TLLLREKHDLERRLNNLEDQDRVERAAEEAASQKLKRDLRKYKALLRDAQSQLERAKSDS 389

Query: 636 A 636
           A
Sbjct: 390 A 390


>gi|167533688|ref|XP_001748523.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773042|gb|EDQ86687.1| predicted protein [Monosiga brevicollis MX1]
          Length = 839

 Score = 44.1 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 69/192 (35%), Gaps = 20/192 (10%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI-RYDNNELQKLWSFLFS 524
           L  ++      +      E AL    + +P +LQE +  L+     D+   ++  + L +
Sbjct: 482 LTPTACSSSGENTNMEALEQAL--GAMQNPKLLQELFDHLSSNSEIDHPLCEECTNSLLN 539

Query: 525 DFVEQKYFLPE---EIHQRL-----------CERGFGELLKQLDRQVRDAGLWSATTEAN 570
           +   +   L E   E++  L            E    + L+ +D ++          +A 
Sbjct: 540 NLDRELRDLGERRREMNDFLAASQSHSDHAPPEEELLDQLRLVDEEIETLSKQLTDLDAA 599

Query: 571 IVDVRQGYQQALALYKRFRLLSRQ-KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             D+R       A  +  +   ++  + + +  AQ+  +   ++ A L     E+  Q+ 
Sbjct: 600 EADLRSAIGDKEATIQELKNEEQRHLQSLHE--AQLDLQDVDDERAELEIQQQELSDQLE 657

Query: 630 QIESQEAMIEGF 641
            +     + + F
Sbjct: 658 FLRRTNVLNDAF 669


>gi|160893651|ref|ZP_02074435.1| hypothetical protein CLOL250_01205 [Clostridium sp. L2-50]
 gi|156864636|gb|EDO58067.1| hypothetical protein CLOL250_01205 [Clostridium sp. L2-50]
          Length = 318

 Score = 44.1 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 63/248 (25%), Gaps = 23/248 (9%)

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQR-LAAIAGVPLPVVDPKIEKKEKIQTDLI 118
             +Y  +    G  + F+      SF ++V   L    GV         + + K    L 
Sbjct: 57  NRWYDHATEKGGCAIDFVRMFYNQSFPDAVTMLLGGEQGVA-YRESVNQQLEPKKPFVLP 115

Query: 119 RLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
              +     F + +K    D ++      + +    ++   + +       +  H  ++G
Sbjct: 116 EANQTMHRAFAYLIKTRCVDPKVVSVFAGKHMIYEDVKYHNVVFVGFDSDGIPRHAHKRG 175

Query: 178 F-----------SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
                              +   I   N+   ++   + L F     +G +         
Sbjct: 176 TCQKGQPFKGNVEGCDPRYSFRWIGKSNTVYVFEAPIDMLSFISMYQKGWMDHSYVALCG 235

Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
             E        +    H  +           +Q   R     +         GY  V SL
Sbjct: 236 VAEHALMQLLNDAP--HISQIALCLDHDKAGIQARERIKKNLSE-------RGYHMVFSL 286

Query: 287 CQAGVQNV 294
                   
Sbjct: 287 FSNLKDWN 294


>gi|148681214|gb|EDL13161.1| mCG6218 [Mus musculus]
          Length = 1678

 Score = 44.1 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 47/107 (43%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV +        E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKSLKEEIEKLRKQVAEVNHLEQQLEEANSVRRELDDAFRQIKASEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           E+ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 ELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|254692972|ref|NP_001028457.1| serine/threonine-protein kinase MRCK alpha [Mus musculus]
          Length = 1732

 Score = 44.1 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 47/107 (43%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV +        E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKSLKEEIEKLRKQVAEVNHLEQQLEEANSVRRELDDAFRQIKASEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           E+ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 ELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|33695267|ref|NP_631984.2| replicative helicase DnaB1 [Pseudomonas sp. SLT2001]
 gi|33666923|emb|CAD13463.3| replicative helicase dnaB1 [Pseudomonas sp. SLT2001]
          Length = 507

 Score = 44.1 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 42/150 (28%), Gaps = 6/150 (4%)

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
              +     ++       E A+L  L+   +  +     +A   +  +  + ++  + + 
Sbjct: 5   TTDAPTGSQRIPPHSIEAEQAVLGGLLLDNSTFESMADLVAVDDFYMSNHRAIFRAISTL 64

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
                 F    +H             + DR      L    T        + Y   +   
Sbjct: 65  AGRGVAFDIVTLHDHFNSEP------EADRPGHIEYLKELLTNTPSTANIESYASLIRER 118

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            + R +    E+I +   +   +  AE   
Sbjct: 119 AKLRRIITTCEDIYQSAQRPEGRSAAELIE 148


>gi|328771698|gb|EGF81737.1| hypothetical protein BATDEDRAFT_34549 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1319

 Score = 44.1 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 70/251 (27%), Gaps = 23/251 (9%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYY--YSQAIRDRLQQLFQKYITEHSGYG 447
            E  S     E    +      +   +D++ R Y      I   +  L        SG  
Sbjct: 225 REIVSKTPVSELTRYKDKKTKLVFEFEDKEAREYEGEKSEISKAVASLEHVLQISKSGAQ 284

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                             +   S++       PS     ++ T+++   +    Y  + +
Sbjct: 285 NSSPPATHVAFAAIQPVPIQIESVMAPPPLAAPSSASRNVMPTMLSKRVVAIYDYDPVEE 344

Query: 508 IRYDNNELQKLWSFLFS------DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
                 E   L   +          V+      E +   + +    E  +       ++ 
Sbjct: 345 GELAIRENDIL--VVVDDSDPDWWLVKHTTHNKEGL---VPKTYVEEETENSRAASNESV 399

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                 E     +++   + + +  R   L  Q+    +QIA+   + E E+        
Sbjct: 400 ALYQAREHERQQIQEHEAREMEIRHRAHELEEQRR--MQQIAEEQRRHEQEQLEH----- 452

Query: 622 HEVHIQIHQIE 632
                Q+ Q+E
Sbjct: 453 ---QRQMEQLE 460


>gi|325478582|gb|EGC81694.1| replicative DNA helicase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 443

 Score = 44.1 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 60/178 (33%), Gaps = 12/178 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +      L E A++ +++          Q +  + + ++  Q+++  +   F +      
Sbjct: 6   RPLPHDFLAEQAIIGSILAKNETFDSVNQIIKPVDFYDSRTQRIYKSIIKMFEKDIKVDE 65

Query: 535 EEIHQRLCER------GFGELLKQLDRQV-----RDAGLWSATTEANIVDVRQGYQQALA 583
             +  +L         G  E + ++          D    S   ++ +  +    +  + 
Sbjct: 66  ISLLSQLKNENILQEVGGEEFITEITLSSFYTPNIDTYARSVKEKSILRSLIGASEDIID 125

Query: 584 L-YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           L Y+    +       E +I +V+     +    L   + E   +I+++   +  I G
Sbjct: 126 LSYRHDGKIDSILSTAESKIFEVSQVNHNQGLVRLSDTMEETLQKINELTLADGTITG 183


>gi|312216092|emb|CBX96044.1| similar to myosin type II heavy chain [Leptosphaeria maculans]
          Length = 2588

 Score = 44.1 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 61/544 (11%), Positives = 151/544 (27%), Gaps = 25/544 (4%)

Query: 108  EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167
            +K E+    L  +++ +      +L+++       Y + +      +           + 
Sbjct: 1779 QKLERENYRLHDMLDDSAKK-VSALEHSLQSGQLSYQEVQTKSHEELFELLTSQEQSRKS 1837

Query: 168  SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227
             ++ H        +       +     S     R        + S R Q  A   + L +
Sbjct: 1838 IVQAHNNAINELADAKTAFDEIKQAKISMEMEIREIQAEYDEMVSEREQEQANHNQLLQE 1897

Query: 228  GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287
               ++     ET      ++  N + +      +     +   +   +L     +  +  
Sbjct: 1898 FADLQIRLDNETSTLVDVQSSLNLYKSR-----ADEYFSKLEQAEIAVLRASRAEQFAKQ 1952

Query: 288  QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
            QA       +   A  +    ++  L  ++    +  +        A+            
Sbjct: 1953 QAKETEETCATIMAQRKEMDGMVEDLQRQVQRYDERVEDLQADLQTALQAKKRLQNELED 2012

Query: 348  VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
                     ED              K     L  +     +E EN  F   +    L   
Sbjct: 2013 YRSQHAHDIED-----SETSLEQTRKKYQAELSTLTTELDQERENIIFVREEN-GRLREE 2066

Query: 408  LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
            ++   N   D+ L        + RL+   Q              +            R +
Sbjct: 2067 IEELRNKWDDELLNSSTWAKEKSRLEMTLQTISNSRDEAANAHNEAQSKIVSLLSQVRTL 2126

Query: 468  QSSLVKGKLSKKPSLREAALLLTLINHP-AILQEQYQELADIRYDNNELQKLWSFLFSDF 526
            ++++      +  ++ E   L   +      L E  +  +    +     +    L S  
Sbjct: 2127 RTNVDDLAAERDSAIEEKKRLEARLQEAADTLDELSRSESPAMRNAAAYDRDLLELKSGL 2186

Query: 527  VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY- 585
             +Q+      + +        + L++     R+A +     +A +    +  Q  L    
Sbjct: 2187 AQQEDITAAAVGKMRRAEALAQELQKDIVAEREANVKLHKDKAAVEKALKDLQLRLVDLE 2246

Query: 586  ---------KRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634
                     K  R L  + +E+E+ +    +   +E      +   + ++  QI + + Q
Sbjct: 2247 TKGYSGSAGKDVRFLHGRIQELEQALDNSESTRLSESRSVRNVDRTVRDLQTQIERRDKQ 2306

Query: 635  EAMI 638
             A +
Sbjct: 2307 NAAV 2310



 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 35/319 (10%)

Query: 357  EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
             D     +         L  E +     L + E   +     +++ +LE  L   +   +
Sbjct: 974  MDIQRIQKTLESERALALDKEEIFKRLQLREAELSEKLAGAIEDQDQLEDQLDALVEAKR 1033

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ--KGPSQRLMQSSLVKG 474
              + +  + +   ++  Q+  +  +E+        + +R  ++  K  +QR      +  
Sbjct: 1034 KTEEQVEFLRRELEQAGQIIGRLESENQDLEEQSARLSRQIEELEKAKAQRTQAEESLSQ 1093

Query: 475  K---LSKKPSLREAAL----LLTLINHPAI-------LQEQYQELADIRYDNNELQKLWS 520
            +   LS   SL+E  L       L N   +        +E       I+   +E +++  
Sbjct: 1094 EVKMLSSHLSLKERKLQDLEAKLLKNDQDLDIKLAASAKEVQAGKKHIKELLDENRQIRQ 1153

Query: 521  FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
             +         +  E++ +R  E     L   L R V D  ++                +
Sbjct: 1154 QISDLSSTSTSY--EDLIRR-KESELAILKTDLKRYVEDRRIFDDEKRTLASKHDDLQSR 1210

Query: 581  ALALYKRFRLLSRQKEEIEKQIAQVTAKGEA----------------EKTAILISILHEV 624
                      +  QK+++E++ A      E                 E+T  L + L EV
Sbjct: 1211 LRDARAELDAVRSQKQQLEREAADAKRLLEEKISEDAQDTEGRKLLEEQTEALKAELFEV 1270

Query: 625  HIQIHQIESQEAMIEGFGK 643
              ++ +       +E  G+
Sbjct: 1271 RKELSRERQSRDDVEMLGE 1289


>gi|297285439|ref|XP_001088711.2| PREDICTED: TATA element modulatory factor isoform 2 [Macaca
           mulatta]
          Length = 1095

 Score = 44.1 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 62/175 (35%), Gaps = 7/175 (4%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +   Q      KL+     +E  L    ++   + ++     A +     EL  L  
Sbjct: 615 GKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKNRSIQAALDSAYKELTDLHK 674

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +  +        + + +  +   EL   L++   +A     T    + D+R   Q+
Sbjct: 675 A---NAAKDSEAQEAALSREMKAK--EELSAALEKAQEEARQQQETLAIQVGDLRLALQR 729

Query: 581 -ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              A  ++   L  +  E+++++ +   +   E +  + S    +  QI  +++ 
Sbjct: 730 TEQAAARKEDYLRHEISELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 783


>gi|291390577|ref|XP_002711792.1| PREDICTED: CG12340-like [Oryctolagus cuniculus]
          Length = 681

 Score = 44.1 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 47/397 (11%), Positives = 118/397 (29%), Gaps = 17/397 (4%)

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309
           N   +   + K+ +           IL +   +V +L  A   + V +    L+   +  
Sbjct: 3   NLDKSKPKILKAKKTMPTSCRKQVEILNKT-KNVEALKTASTGSNVPTGNLNLSTGFIIS 61

Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAID----LVLCHLIPGNRVNFVLLSRG-EDPDSFIR 364
             +LS  +    D +   + +    I     +        +      ++     P+   R
Sbjct: 62  TSRLSQNVGFSLDSNKNTVSSEKNTIIPQNLIKPVEENVDSETRLECVNEHVTCPNQKPR 121

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
               +  +  I ++    D        + S  +         HLK+         L    
Sbjct: 122 KAIDSPSKLCIQKAKDSWDTSESHFEYHTSVTSSFFEHNKNSHLKSIW--WPPSLLSSIL 179

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                  +  L  K I       +   K+     ++          +   K     S+  
Sbjct: 180 QMPKATEMNTLDDKRIDNMISLSKTSSKSVSLHKRQNDILSSDSDFVPVEKTPNLSSVSS 239

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           +     ++      +  Y  +++     +E    W               + +      +
Sbjct: 240 SNCAAEVLKSEEYNKNCYSSISNCESTESE----WQSSLDTDGNNSQNQKKRMFS--ENK 293

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              + +K  ++   ++ +      A +  V+   QQ +     F+    + +E+ ++I +
Sbjct: 294 ENAKRMKTSEQINENSRVTPERQTALLEKVKHLIQQEI-CNINFKQFDNKLKELNERIEK 352

Query: 605 VTAKGEAEKT-AILISILHEVHIQIHQ-IESQEAMIE 639
           +  K + E     L + + ++  +I   + SQ   IE
Sbjct: 353 MQCKNKHEAVANELFAKIAKLQRRIKAVLSSQSIRIE 389


>gi|282854251|ref|ZP_06263588.1| DivIVA domain protein [Propionibacterium acnes J139]
 gi|282583704|gb|EFB89084.1| DivIVA domain protein [Propionibacterium acnes J139]
 gi|314923237|gb|EFS87068.1| DivIVA domain protein [Propionibacterium acnes HL001PA1]
 gi|314967004|gb|EFT11103.1| DivIVA domain protein [Propionibacterium acnes HL082PA2]
 gi|314980960|gb|EFT25054.1| DivIVA domain protein [Propionibacterium acnes HL110PA3]
 gi|315091691|gb|EFT63667.1| DivIVA domain protein [Propionibacterium acnes HL110PA4]
 gi|315093075|gb|EFT65051.1| DivIVA domain protein [Propionibacterium acnes HL060PA1]
 gi|315103151|gb|EFT75127.1| DivIVA domain protein [Propionibacterium acnes HL050PA2]
 gi|327327824|gb|EGE69600.1| putative immunogenic protein antigen 84 [Propionibacterium acnes
           HL103PA1]
          Length = 361

 Score = 44.1 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 45/148 (30%), Gaps = 3/148 (2%)

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              I     + +       +  +N  L+     L       +    +++           
Sbjct: 23  YRAIEVDDFVDKVEAAFMTLTDENERLKAQVEAL-RSGEPGEQRPDQDLLN--ENEHLRA 79

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            +++L  Q     + S   +      +   ++A  L +    L  Q EE+ +   +    
Sbjct: 80  QVEELRSQQNGRTVNSGEVDRAKAAQQDAEKRARQLEQERVSLQSQIEELRQAARRPGQD 139

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636
            +  + A L S    +  Q+   ++  A
Sbjct: 140 IDPAEVARLRSENERLGAQLRDAQTLAA 167


>gi|158287262|ref|XP_309338.4| AGAP011312-PA [Anopheles gambiae str. PEST]
 gi|157019567|gb|EAA05057.5| AGAP011312-PA [Anopheles gambiae str. PEST]
          Length = 512

 Score = 44.1 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 27/287 (9%), Positives = 86/287 (29%), Gaps = 30/287 (10%)

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
             +       DP + +      A   +            + E    S      R +++  
Sbjct: 42  PRYSKPPNLNDPHAALFRDQLAASGNIASRQSSFQAAHSEHEMRLMSDQRTGVREQMDSL 101

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
               +   + Q       +   +R +++ Q+   E   +     +           +  +
Sbjct: 102 AALVMQQRQAQAKMIEALKDAEERHKRVVQELYDERRKHEHTTAQGDDITYGLEIERSRL 161

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           +  L   K   K    E             L++  ++    +       +    +     
Sbjct: 162 KQELDHEKDQHKVLEIE-------------LKKVQEQFEAEK------NRQKQIVLLLLA 202

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E+K  + + I +R       ++L +  ++V          E    + ++  +    L K+
Sbjct: 203 ERKKIIIKYIEERKRSEDLAQILSEEKQRVDTIA------EGLEEESKKSLRMEAELEKQ 256

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +    +++ + + +A+   + + ++       + ++  +I  +  Q
Sbjct: 257 AQQFELERKLLHQSLAKEEKRVKEQEV-----EIQQLKAEIELLRKQ 298


>gi|73958801|ref|XP_862340.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 6 [Canis familiaris]
          Length = 1920

 Score = 44.1 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 825  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 884

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 885  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 944

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 945  LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1004

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1005 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1061

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1062 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1102


>gi|330995556|ref|ZP_08319459.1| MutS2 family protein [Paraprevotella xylaniphila YIT 11841]
 gi|329575336|gb|EGG56881.1| MutS2 family protein [Paraprevotella xylaniphila YIT 11841]
          Length = 855

 Score = 44.1 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 41/86 (47%)

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           + L +   DA      + A I +  +  ++A A  ++ R + ++ ++ +K +  +  + E
Sbjct: 590 EILRKAKEDAEQLLRESNAKIENTIKTIREAQAEKEKTRNVRQELDDFKKTLDDIEKRHE 649

Query: 611 AEKTAILISILHEVHIQIHQIESQEA 636
           A+K A  +  L E   +  + + ++A
Sbjct: 650 ADKIARKMQQLQERKKRQAERKEKKA 675


>gi|324499989|gb|ADY40009.1| Myosin-3 [Ascaris suum]
          Length = 1906

 Score = 44.1 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 42/371 (11%), Positives = 112/371 (30%), Gaps = 27/371 (7%)

Query: 287  CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
             +  VQ     L           L       +              + ++ +   +    
Sbjct: 731  YKRRVQQQSGLLTLQRNVRAWCTLRTWEWFKLYGRVKPMLKAGKITEEMEKLTDQIKQLE 790

Query: 347  RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
            +         +D +  ++                  +     E+E R       + ELE 
Sbjct: 791  QTLQKEEGNRKDLEKQVKVLMDEKAALFENLEK---EKANLAESEERYAKLNAAKVELER 847

Query: 407  HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             L      I D + R         + +    +   ++S      +K+   +  +  + R 
Sbjct: 848  QLNELSERIADMEDRQNEMGRQHKKDEAEINELKKKNSELEMSLRKSETEKQAREQNIRA 907

Query: 467  MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
            +Q  +     +     +E        +   + ++  ++L       N + KL S L    
Sbjct: 908  LQDEMSNQDENIARVNKEKK------HQEEVNRKLMEDLQAEEDKVNYMNKLKSKLEQQL 961

Query: 527  VE-QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
             + ++    ++  ++  E+   ++  +L   + +             ++++     +A  
Sbjct: 962  DDMEETVERDKRARQDLEKAKRKVEGELKVAMENVDEIMKQKHDIEQNLKKKEADLMAAS 1021

Query: 586  KRFRL-------LSRQKEEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQI- 628
             +          L +Q +++E +I+++    E E+          + L   L E+  ++ 
Sbjct: 1022 SKLEEEQSLVSKLQKQIKDLETRISELEEDLEQERQSRSKSDRTRSELQRELEELSERLD 1081

Query: 629  HQIESQEAMIE 639
             Q  +  A IE
Sbjct: 1082 EQGGATAAQIE 1092


>gi|307206629|gb|EFN84608.1| Rootletin [Harpegnathos saltator]
          Length = 1926

 Score = 44.1 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 28/290 (9%), Positives = 94/290 (32%), Gaps = 22/290 (7%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                     ++ +       + L     + ++        + ++  +     IK + L+ 
Sbjct: 764  TNEKEFQRLQEQLASMRTEKETLEGVLFDTQTNLEATHVRKTQLEKEQKELLIKQESLKG 823

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              ++  ++      +    + S   +   + A  +      ++  + ++ K    K+   
Sbjct: 824  QIARLTKELENSEKRAQDIKQSLTQQSGDQVAEFQQIISNMKKQSEDNIKKVNDEKEQVR 883

Query: 483  --REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
               E  L  +L+    +  E+ +E+  ++     +++L   + +   + +  L    + +
Sbjct: 884  MSLEKRLQQSLLQ---LEGEKNEEINQLQ---QRIEELQQHIENLCKQHEEVLLRAENDK 937

Query: 541  -----LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                 +       LL++L+  +R+     +  +    D     +Q          L  + 
Sbjct: 938  QQALLIAHHDQQALLEKLETIIRELEEEKSNLDRVKRDAASRAEQE---RNNTNQLRDEL 994

Query: 596  EEIEKQIAQVTAKGEAEKT------AILISILHEVHIQIHQIESQEAMIE 639
              +  ++ +   + + EK         L      +  +  +++ Q  M E
Sbjct: 995  NRLRTKLDETKLRADEEKMKLDLKIEELWKERESIQREAEELQVQLHMAE 1044


>gi|73960805|ref|XP_537229.2| PREDICTED: similar to CDC42-binding protein kinase alpha isoform B
           isoform 1 [Canis familiaris]
          Length = 1754

 Score = 44.1 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 49/124 (39%), Gaps = 15/124 (12%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQ 579
                        +    L  +   E ++ L +Q+R++       E       ++   ++
Sbjct: 472 LQYSTADGPLTASK---DLEIKTLKEEIENLRKQIRESSHLEQQLEEANSVRRELDDAFR 528

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQ 630
           Q  A  K+ R L +++EE+ K++ Q + + + +   +          +    E++ ++ +
Sbjct: 529 QIKAYEKQIRTLQQEREELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTE 588

Query: 631 IESQ 634
           + +Q
Sbjct: 589 LHTQ 592


>gi|46199408|ref|YP_005075.1| dnaB replication fork helicase [Thermus thermophilus HB27]
 gi|55981439|ref|YP_144736.1| replicative DNA helicase DnaB [Thermus thermophilus HB8]
 gi|46197033|gb|AAS81448.1| dnaB replication fork helicase [Thermus thermophilus HB27]
 gi|55772852|dbj|BAD71293.1| replicative DNA helicase DnaB [Thermus thermophilus HB8]
          Length = 444

 Score = 44.1 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 54/173 (31%), Gaps = 20/173 (11%)

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQK 530
           ++G++       E ++L  ++    +L E    L     +     +K+++ +     E  
Sbjct: 1   MEGRIPPHSLEAEQSVLGAILLDYQVLDEIEGLLPTPEAFYAEAHRKIYAAMQGLRAEGS 60

Query: 531 YFLPEEIHQRLCERGF-------------------GELLKQLDRQVRDAGLWSATTEANI 571
                 + + L  RG                        +   R V +        +A  
Sbjct: 61  PVDLVTLAEELSRRGELDGVGGISYLMQLSEATPTAAYAEHYARIVAEKWTLRRLIQAAG 120

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             +R  Y++A +L +      ++  E+     +V A+   E        +  +
Sbjct: 121 EAMRLAYEEAGSLDEILDQAGKRILEVALAQTEVEARSMRELVHETFEHIEAL 173


>gi|27529744|dbj|BAA74889.2| KIAA0866 protein [Homo sapiens]
          Length = 1984

 Score = 44.1 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 94/265 (35%), Gaps = 10/265 (3%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     +     E E        ++ ELE  L      +++++ R    QA R ++ Q  
Sbjct: 905  QEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQM 964

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                 +        +K    +       + ++  ++          +E  LL   I+   
Sbjct: 965  LDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKLSKERKLLEERISDLT 1024

Query: 497  I-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEIHQRLCER--GFGELLK 551
              L E+ ++  ++    N+ + + S L       E+     E++ ++L      F E + 
Sbjct: 1025 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIA 1084

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
             L  Q+ +  +  A  E  +          +A   +     ++  E+E  I+ +    ++
Sbjct: 1085 DLQAQIAELKMQLAKKEEELQAALARLDDEIA---QKNNALKKIRELEGHISDLQEDLDS 1141

Query: 612  EKTAILISILH--EVHIQIHQIESQ 634
            E+ A   +     ++  ++  ++++
Sbjct: 1142 ERAARNKAEKQKRDLGEELEALKTE 1166


>gi|325688357|gb|EGD30376.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis SK72]
          Length = 641

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 17/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSILYLGDYDYYLEK 541

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++   QV D+    A  +  I   ++  ++   L +R   L  Q E+++ QI+
Sbjct: 542 KAEQEALREEMEQV-DSDKPVAANDYQIQ--KENQKEQRRLARRLEQLETQIEDLDSQIS 598

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
           Q+       +     S L E   QI Q+ +  +EAM+E
Sbjct: 599 QLQEAM---QATNDASELMESQQQIDQLTAAQEEAMLE 633


>gi|323446503|gb|EGB02641.1| hypothetical protein AURANDRAFT_68696 [Aureococcus anophagefferens]
          Length = 1081

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 49/152 (32%), Gaps = 17/152 (11%)

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
             P ++     ++   R+++ +L++L   L      +K    +   + L  R   ++   
Sbjct: 752 KDPELVDAALAQIGAPRFESRDLRRLR-TLKEKLAREKELDAK--FEELARRSIDQVDDH 808

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYK---------RFRLLSRQKEEIEKQI- 602
            +  V +       + A    V Q Y   +   +             L      +E+ + 
Sbjct: 809 FEALVEEGRRLELDS-AVFKKVDQMYAMVVERRRAVEGAPGEPDEAALREALGTLERLVR 867

Query: 603 ---AQVTAKGEAEKTAILISILHEVHIQIHQI 631
                     E  +   L+  L E  +++ ++
Sbjct: 868 IYGRSAMGAPEEAEGRALLRALDEEKVRLREL 899


>gi|261857546|dbj|BAI45295.1| dystrophin [synthetic construct]
          Length = 1230

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 52/450 (11%), Positives = 127/450 (28%), Gaps = 34/450 (7%)

Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
            LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 69  ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 124

Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
            +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 125 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 184

Query: 323 ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                     D   +    + I+     +          L                 F  
Sbjct: 185 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 243

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 244 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 303

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
           +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 304 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 363

Query: 493 NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
               + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 364 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGL- 421

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                      L+    E    +  Q   +   L K+   ++ + E++   +     + +
Sbjct: 422 ---------EKLYQEPRELPPEERAQNVTRL--LRKQAEEVNTEWEKLN--LHSADWQRK 468

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEG 640
            ++T   +  L E   ++     Q  +I+G
Sbjct: 469 IDETLERLRELQEATDELDLKLRQAEVIKG 498


>gi|225559562|gb|EEH07844.1| anucleate primary sterigmata protein B [Ajellomyces capsulatus
            G186AR]
          Length = 1931

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 21/211 (9%), Positives = 63/211 (29%), Gaps = 6/211 (2%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             +  R     +    +        +   R         R   S   +  L  K       
Sbjct: 951  KLGQRRGDGGRSVAGDSIFERSVSRAQDRSNSHASDGVRSRASDAERESLEIKNGELRDH 1010

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +    + + ++  +  + ++D+   +   Q     +     + +    E  H        
Sbjct: 1011 VSALKLENQSLRTQLDECMSDLEALDRAYQA---DVEQAEEDLQTMQLERDHALQIAEER 1067

Query: 547  GELLKQLDRQV-RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             E L+ L  +   +        +  I + ++   +    ++  + L  +     + I ++
Sbjct: 1068 EEALQDLKAEAQEELDAMGDELDQKIDECQRMEVELANQHENLKALQAEMRSASEGIIRL 1127

Query: 606  T--AKGEAEKTAILISILHEVHIQIHQIESQ 634
               A+   +K   +   L + + ++ Q+E  
Sbjct: 1128 EEDAQSNLQKYKAVQQELDDANRELEQMEKS 1158


>gi|169830395|ref|YP_001716377.1| ATPase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637239|gb|ACA58745.1| ATPase AAA-2 domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 812

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 71/210 (33%), Gaps = 12/210 (5%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWK----KNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           Y     +RL+++ ++  T  +      +      A   +    +  +++ +L +G+L   
Sbjct: 257 YRGEFEERLKKVLEEIRTAGNIVLFIDELHTLVGAGAAEGAIDAANILKPALARGELQTI 316

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +         +   PA+ + ++Q +        E   +   L   +             
Sbjct: 317 GATTLDEYRKHVERDPAL-ERRFQPIMVEEPTVEETIAILRGLRDRYEAHHRV------- 368

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           R+ +       +  DR + D  L     +       +   QA  +    + L ++ EE+ 
Sbjct: 369 RITDDALESAARLSDRYIADRFLPDKAIDLIDEAGSRVRLQAFTMPPELKELEQRVEELR 428

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           K+     A  E EK A L     ++  ++ 
Sbjct: 429 KEKEAAVAAQEFEKAAQLRDQEQKMRAELQ 458


>gi|170589343|ref|XP_001899433.1| Liprin-alpha 2 [Brugia malayi]
 gi|158593646|gb|EDP32241.1| Liprin-alpha 2, putative [Brugia malayi]
          Length = 1190

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 106/348 (30%), Gaps = 30/348 (8%)

Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVLLSRGEDPDSFIRC 365
                       +  D DD    +  ++ DL              V +    D       
Sbjct: 3   WNGTMMCDVMPTISEDSDDAPQGSGTESCDLSGVAGEQNRIEQLMVNMLDERDKLLEQLQ 62

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             +   E L        +   +         T     EL+   K      +    +    
Sbjct: 63  DAQRRIEDLQQHVKD-TERDKESLRRQFDLQTQHLPGELQSLTKELAQLREQLLEKDEEI 121

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             ++       +  +          +++ R    K  +Q        + ++         
Sbjct: 122 VELKAERNN-TRLLLEHLECLVSRHERSLRMTVMKRQAQSPAAGVSSEVEVL-------K 173

Query: 486 ALLLTLINHPAILQEQYQEL-----------ADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           AL     +H A+ ++  + L            ++    +E   L + L     E      
Sbjct: 174 ALKSLFEHHKALDEKVRERLRVAMERVATLEDELSIKGDENSSLKAKLAKVVAE-----V 228

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-YKRFRLLSR 593
           EE HQ+L     G   ++  +Q +   + SA     + +V Q  +Q LA   ++ + L+ 
Sbjct: 229 EEAHQQLNASQNGITAEK-QQQQQFGTVESAGALVELQEVCQRLKQELASSMQQCQELNN 287

Query: 594 QKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +  E+E Q+     +G  E E+   L   L E+  Q    E++ + +E
Sbjct: 288 RNTELEVQLTATQKEGRMEQEQVNKLQHHLQELEAQREDQEARISTLE 335


>gi|145503177|ref|XP_001437566.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404716|emb|CAK70169.1| unnamed protein product [Paramecium tetraurelia]
          Length = 658

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 87/276 (31%), Gaps = 4/276 (1%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P S                    V      E                  ++   N I+ +
Sbjct: 25  PSSKFMNQKIDHTNLNNENKKSTVQYQEAIEYIQEIEEQKSIIEGQNQFIQILRNSIESK 84

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                + Q I D+++ + ++   +         +    ++Q+      +Q  +       
Sbjct: 85  LQIEGF-QMILDQVEIMSKEQKIDLFALVTQLYQELSIQNQQNAQVDNLQQLVDNLNKQI 143

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
               +E   L         L EQ  +L  +  D++      + +     E +++  +   
Sbjct: 144 NCYAKELTELKV---DKQYLLEQLDQLQGVTKDDDTSLFKDAQISKLESENQHYKTQNQK 200

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L    + + L QL++++    L   T E    ++ +  +     + + ++    K E+
Sbjct: 201 LHLQNEKYQDDLAQLEKRLNKIHLNLKTEECEKEELIKELENLKQTFYKSQVKEEHKLEL 260

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              + +   +    K   L + + E++ QI + + Q
Sbjct: 261 NLALKEQELEFSNNKIKRLENQIKELNAQIEEQQKQ 296


>gi|119498411|ref|XP_001265963.1| hypothetical protein NFIA_036380 [Neosartorya fischeri NRRL 181]
 gi|119414127|gb|EAW24066.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181]
          Length = 717

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 38/335 (11%), Positives = 97/335 (28%), Gaps = 14/335 (4%)

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
            L        L    D  G   +     L+       N        +  DP        K
Sbjct: 124 NLSGNLSSQWLSSSTDSKGKPRSRLTQALLDSRDKSPNDSTTTTNGQRADPSPSTNTASK 183

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA- 427
            A +    +   +     + ++        D            +   +    ++   +  
Sbjct: 184 EASQSTKEDDETVNLDDPRSQSGKYWKAEFDSYRARTTSEIRKLIQYRSAAKKFALMKEA 243

Query: 428 ----IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               +  +L++  +  + E   +      +    + K   ++L+Q    +  L+ +   R
Sbjct: 244 EASRLAKKLKE-EEVKVAEMERHVTQLASSMVAENAKADREQLVQDLTKQTALALQYKHR 302

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRL 541
              L   L  H  +  E    +     +N+        L       +    + E   Q+ 
Sbjct: 303 VNTLRKLLEQHGVVGSEVDDIVGKREANNSSNDTSQELLKTQQALSQANARIDEMKLQQA 362

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEK 600
                 EL +  +++  +    + T + ++  V+Q   +     K     L +++ ++E 
Sbjct: 363 EFDKLKELAQSSEQKASELARENLTLKQSLARVKQEMSKYEGRRKEKEAKLKQREIKLEA 422

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +I +        +         EV   + +  ++E
Sbjct: 423 RIQEYRN-----RLKAASQEHREVEEDLRESFNEE 452


>gi|83643779|ref|YP_432214.1| DNA repair ATPase [Hahella chejuensis KCTC 2396]
 gi|83631822|gb|ABC27789.1| ATPase involved in DNA repair [Hahella chejuensis KCTC 2396]
          Length = 1229

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 104/296 (35%), Gaps = 18/296 (6%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +R + K   +     +    +   K  TE+      +   +           ++ Q
Sbjct: 286 PAEKLRPFYKDYQQAHDAYAQT--ERHIKSLTESLELARVELERKSSELALAKKALMQLQ 343

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R      + +++  L Q     +S  G+  +  A    ++  S    ++  V+ K  +
Sbjct: 344 TQREELESLVAEKVMPLDQAIEQLNSLMGQQQETVAEVVRRRDESSEQEKALSVQLKALR 403

Query: 479 KPSLREAALLLTLINH---PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           +        L +  +H   P  L    + LA       EL KL   + +   EQ+    E
Sbjct: 404 EEIQAANEYLESRRSHKLLPESLPLWRERLAQRTKARGELTKLAEAIKAREAEQRKQEVE 463

Query: 536 EIHQRLCERGFGELLKQLDRQVRD-----AGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               +  +    ++L++  R V D      G+ S  T+A + +     Q++     R   
Sbjct: 464 SGRLQEAQTEALKVLEEHRRVVADTQKAILGVLSGETDAELRECLASMQKSRTDRFRLGR 523

Query: 591 L-------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           L        ++  E++ Q+ +   +    K ++L+    +   +   ++  + +++
Sbjct: 524 LADDYGKRRQELAELKAQLQEREGELAQGKQSLLMMR-KQYKAEKAHLDDLDRLMQ 578


>gi|186683460|ref|YP_001866656.1| hypothetical protein Npun_R3273 [Nostoc punctiforme PCC 73102]
 gi|186465912|gb|ACC81713.1| protein of unknown function DUF323 [Nostoc punctiforme PCC 73102]
          Length = 1073

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 80/284 (28%), Gaps = 39/284 (13%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ-------------AIR 429
           +     + E+                +       D+  R    +             AI 
Sbjct: 466 EAQITTQIESYHQKLQQYEQAFVKATQRQHY--PDEVTRKQLQETWQTLGLSEGDVGAIE 523

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQ--KGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            R+    + Y      Y + +++  +           +L Q        ++  +  E  +
Sbjct: 524 RRINAEIETYQANLRQYEQEFREAVQQEYPLSSFKRSQLTQRHQALNLTAENVTAIENPI 583

Query: 488 LLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
           +  +  H   LQ+  +     ++++          L                  L +   
Sbjct: 584 VAAIEEHRQKLQQYEEVFRESMQFEYPLSDATREELRRFQQ----------VLELNDAEI 633

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ--ALALYKRFRLLSRQKEEIE----- 599
            +L   + +   ++            +  +  QQ  A+ L ++     RQ+EE E     
Sbjct: 634 AQLEAIIIQSSSESESRKQQERIRQEEAEKQRQQQEAVRLKQQEAEKQRQREEAEYGQKL 693

Query: 600 ----KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               +++ +    G +  +  +   L ++   +   ++    IE
Sbjct: 694 QQYEQELTKTIEAGNSLDSDDVRQRLRQLQRTLGLKQTDITAIE 737


>gi|255547217|ref|XP_002514666.1| chaperone clpb, putative [Ricinus communis]
 gi|223546270|gb|EEF47772.1| chaperone clpb, putative [Ricinus communis]
          Length = 912

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      ++I   +              + + +    + 
Sbjct: 391 AIDLVDEACANVRVQLDSQPEEIDNLERKKIQLEVEHHALE------KEKDKASKARLSE 444

Query: 567 TEANIVDVRQGYQQALALYKRF-------RLLSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
               + D+R   Q  +  YK+        R L +++EEI+  I +   + +  + A L  
Sbjct: 445 VVKELDDLRDKLQPLIMKYKKEKERIDEIRRLKQKREEIQFAIQEAERRYDLARVADLKY 504

Query: 619 SILHEVHIQIHQIESQ 634
             L EV   I ++E  
Sbjct: 505 GALEEVDAAIARLEGS 520


>gi|167522299|ref|XP_001745487.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775836|gb|EDQ89458.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1247

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 74/233 (31%), Gaps = 29/233 (12%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             +   + + L+   +      +      ++          S     S     K ++   
Sbjct: 474 EEHKDKVAEMLRHEEELETAIEAEDYERAEELEALIASLTESTSTPPSFTSARKSTRASL 533

Query: 482 LR-----EAALLLTLINHPA----ILQEQYQELADIR-YDNNELQKLWSFLFSDFVEQKY 531
           LR     E  LL            +     ++L +++ + +       S       EQ  
Sbjct: 534 LRLLQQEEQILLDQAATQRESAQTLESSLQEQLDELKTFRSGLEDATRSERARIDAEQMK 593

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               E H  + ++   E + +L+    +         A   D R+              +
Sbjct: 594 LQRGEAHLHVDQQHLQEAVDRLESLAAERT-------AEFQDARRRLVDD------RERV 640

Query: 592 SRQKEEIEKQIAQVTAKGE------AEKTAILISILHEVHIQIHQIESQEAMI 638
            R+  E+E+++ +   K E      A++   + +   ++  +  Q+E+Q +++
Sbjct: 641 RREIAELERKLREARHKEERLEKDIAKEDERIAAAEQDLVAERSQVEAQRSLV 693


>gi|88607307|ref|YP_504933.1| replicative DNA helicase [Anaplasma phagocytophilum HZ]
 gi|88598370|gb|ABD43840.1| replicative DNA helicase [Anaplasma phagocytophilum HZ]
          Length = 485

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 54/173 (31%), Gaps = 15/173 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH---- 538
            E  L+  ++    I       ++   + +    +++  +              +     
Sbjct: 26  AEQMLIGAMLRDNRICDALEDMISSEVFYDPLHGRIFDQVVKINKRGLSANEISLKMFFD 85

Query: 539 --QRLCERGFGELLKQLDRQVRDA-GLWSATTEANIVDVRQGYQQA-------LALYKRF 588
             + L E G GE L ++  +      + S         +R+               Y   
Sbjct: 86  NDEALLECGGGEYLAKIAAKASVVFDIRSVARVVFDAHLRRCLISLGSDIVGKAYDYDSD 145

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIHQIESQEAMIEG 640
               +Q E   +++  +  KG+A++     + L  +V  +I      +  ++G
Sbjct: 146 NPAEQQIENAAQKLFLLGNKGKADRNYHTFATLIGDVRKKIESARHNKDALQG 198


>gi|134034172|sp|Q3UU96|MRCKA_MOUSE RecName: Full=Serine/threonine-protein kinase MRCK alpha; AltName:
           Full=CDC42-binding protein kinase alpha
 gi|187957250|gb|AAI58096.1| Cdc42bpa protein [Mus musculus]
          Length = 1719

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 47/107 (43%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV +        E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKSLKEEIEKLRKQVAEVNHLEQQLEEANSVRRELDDAFRQIKASEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           E+ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 ELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|73960807|ref|XP_851425.1| PREDICTED: similar to CDC42-binding protein kinase alpha isoform B
           isoform 2 [Canis familiaris]
          Length = 1732

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 49/124 (39%), Gaps = 15/124 (12%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQ 579
                        +    L  +   E ++ L +Q+R++       E       ++   ++
Sbjct: 472 LQYSTADGPLTASK---DLEIKTLKEEIENLRKQIRESSHLEQQLEEANSVRRELDDAFR 528

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQ 630
           Q  A  K+ R L +++EE+ K++ Q + + + +   +          +    E++ ++ +
Sbjct: 529 QIKAYEKQIRTLQQEREELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTE 588

Query: 631 IESQ 634
           + +Q
Sbjct: 589 LHTQ 592


>gi|115464933|ref|NP_001056066.1| Os05g0519700 [Oryza sativa Japonica Group]
 gi|62510680|sp|Q6F2Y7|HS101_ORYSJ RecName: Full=Heat shock protein 101
 gi|18033450|gb|AAL57165.1|AF332981_1 heat shock protein [Oryza sativa Japonica Group]
 gi|50080323|gb|AAT69657.1| putative heat shock protein HSP101 [Oryza sativa Japonica Group]
 gi|52353699|gb|AAU44265.1| heat shock protein HSP101 [Oryza sativa Japonica Group]
 gi|113579617|dbj|BAF17980.1| Os05g0519700 [Oryza sativa Japonica Group]
 gi|215740589|dbj|BAG97245.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222632258|gb|EEE64390.1| hypothetical protein OsJ_19232 [Oryza sativa Japonica Group]
          Length = 912

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + I   +              + + +      
Sbjct: 393 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVEHHALE------KEKDKASKARLVE 446

Query: 567 TEANIVDVRQGYQQALALYKRFRL-------LSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
            +  + D+R   Q     Y++ +        L +++EE++  + +   + +  + A L  
Sbjct: 447 VKKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAERRMDLARVADLKY 506

Query: 619 SILHEVHIQIHQIESQ 634
             L E+ + I ++ES+
Sbjct: 507 GALQEIDVAIAKLESE 522


>gi|55379420|ref|YP_137270.1| seryl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|1711651|sp|P54221|SYS_HALMA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|1004231|emb|CAA62489.1| seryl-tRNA synthetase [Haloarcula marismortui]
 gi|55232145|gb|AAV47564.1| seryl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 460

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 9/102 (8%)

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            + +++    VRDA      T  ++ ++    ++   L      L +++ E+  +I ++ 
Sbjct: 4   RQFVREHPETVRDAIERKGVTGVDLDEILDIDEEWRELKAEGDGLRQERNEVSSKIGELK 63

Query: 607 AKGEAEKTAILISILHEVHIQIHQIES---------QEAMIE 639
             G+ E+    I    E+  ++  IE          +EA++E
Sbjct: 64  QDGKDEEAQEAIDRSQELKDELQDIEERADELESQLEEALLE 105


>gi|322688633|ref|YP_004208367.1| peptide chain release factor [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320459969|dbj|BAJ70589.1| peptide chain release factor [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 374

 Score = 44.1 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E I + L        +K L+ Q    GLW     A    +      A +  KR    S++
Sbjct: 18  ESIAKALDVDRLKADIKDLETQAAAPGLWDDPENA--QKITSRLSAAESQLKRLNSASQR 75

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +++E  +     +G+ +      S + E+   + Q+E Q  +++G
Sbjct: 76  IDDVETLVELGREEGDQDSLDEAQSEIGEIQKDLDQMEIQT-LLDG 120


>gi|311270583|ref|XP_001925858.2| PREDICTED: huntingtin-interacting protein 1-related protein-like
           [Sus scrofa]
          Length = 1080

 Score = 44.1 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 94/289 (32%), Gaps = 32/289 (11%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            ++      +        L+  ++ IK +  R  Y   ++ ++  L  +   +     + 
Sbjct: 360 MKDDRDLQIESLKREVETLRAELDKIKLEAQR--YISQLKGQVNALEAELEEQRKQKQKA 417

Query: 450 WKKNARHR----DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ-- 503
              N + R      +       ++  ++ +  KK S  EA        H  ++    +  
Sbjct: 418 LVDNEQLRHELSQLRAAQLEGERNQGLREEAEKKASATEARYNKLKEKHSELINTHAELL 477

Query: 504 --------ELADIRYDNNELQKLWSFLF----------SDFVEQKYFLPEEIHQRLCERG 545
                   +L   +    E+ ++   L              +E++    E++ + L  + 
Sbjct: 478 RKNADTAKQLTVTQQSQEEVARVKEQLAFQVEQVKRESEMKLEEQSDQLEKLKRELEAKA 537

Query: 546 FG-----ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                  E L + ++   +      T  A    +    +Q  A     + L R+KE    
Sbjct: 538 AELVRVQEALSRTEQSGSELSSRLDTLSAEKDALSSTVRQREADLLATQSLVREKEAALS 597

Query: 601 QIAQVTAKGEAEKTAILI-SILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           Q  Q +++   E    L      E  +Q   ++ Q AM+ G    + R+
Sbjct: 598 QEQQRSSQERNELQGRLADKEFQEQGLQQRLLDEQFAMLRGTAAEAERI 646


>gi|301113386|ref|XP_002998463.1| myosin-like protein [Phytophthora infestans T30-4]
 gi|262111764|gb|EEY69816.1| myosin-like protein [Phytophthora infestans T30-4]
          Length = 3298

 Score = 44.1 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 31/302 (10%), Positives = 92/302 (30%), Gaps = 16/302 (5%)

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
             +  + P        L+  +            A +          D             
Sbjct: 657 RYVRCIKPNELKRPSELNDLDCARQLKYSGMMEAIQIRQAGFAMREDHDVFFYDYQSLTP 716

Query: 397 TPDERAELEIHLKNCI----NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452
             +   EL   + + +       +  K + +  +A+  +L++L        +   + W +
Sbjct: 717 DAENIKELVEEISSMLGAGKEEWQLGKTKVFLKRAMAFKLRKLEVLRCKSAARAIQKWVR 776

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
           N    +     Q   +  + K +L +        +   ++     + + ++   + R  N
Sbjct: 777 NMARAEAVVKIQTKARQFVAKKRLQRLRRSAYRVM--YILRMRVAMSKYHRMRDEYRMQN 834

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI- 571
                  + +             ++     + G  EL  ++    R     + + +  + 
Sbjct: 835 E-----KAVVVQKLARGYLVRKRDLLHPFGDMGPKELDAKIAEMERAIEDAAVSKQFELC 889

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            D++   ++ +   K+ R      +EI+ +I Q+  + EA   +       E+  ++  +
Sbjct: 890 ADLQLELEKIVDARKKVRTA----KEIDAEIKQLNVEMEAAALSKQFGRCAELQKELEVL 945

Query: 632 ES 633
           + 
Sbjct: 946 QE 947



 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 47/529 (8%), Positives = 149/529 (28%), Gaps = 57/529 (10%)

Query: 122 EVATDFFHHSLKNARDKRLHYYLDER-----GIDSHAIEMFKLGYAPDS--RYSLREHLR 174
           E A   F  +L N+  +    +   +          A   F + +        +   + +
Sbjct: 507 EEANKKFVSNLHNSFGRTSSGHSSGKNKFYVHPKMDADLHFGIKHYAGEVIYDASGFNDK 566

Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234
                 + + E       D     +D     +     +   Q  +   R     +  +  
Sbjct: 567 NNETLNDDMKELIRQSQSDWLRGIFDLNMQSIEAIPGNKPQQQHSISRRPNEMKKGAQGN 626

Query: 235 NSPE-TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
            S     +    +  Y     ++ +  +  + VR    + +       D+    Q     
Sbjct: 627 KSRNIREVSVSAQFRYQLHELMHKISLANPRYVRCIKPNELKRPSELNDLDCARQLKYSG 686

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           ++ ++           + +        +    P      + ++ +   L  G        
Sbjct: 687 MMEAIQI---RQAGFAMREDHDVFFYDYQSLTPDAENIKELVEEISSMLGAGKE------ 737

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
                       +     +  +  ++       +        +      +   ++     
Sbjct: 738 -----------EWQLGKTKVFLKRAMAFKLRKLEVLR---CKSAARAIQKWVRNMARAEA 783

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +K   ++    Q +  +  Q  ++         R     +++   +   +   + ++V 
Sbjct: 784 VVK---IQTKARQFVAKKRLQRLRRSAYRVMYILRMRVAMSKYHRMRDEYRMQNEKAVVV 840

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            KL++   +R+  LL     HP      + ++      + ++ ++   +    V +++ L
Sbjct: 841 QKLARGYLVRKRDLL-----HP------FGDMGPKEL-DAKIAEMERAIEDAAVSKQFEL 888

Query: 534 PEEIHQRLCE-----------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             ++   L +           +     +KQL+ ++  A L         +       Q  
Sbjct: 889 CADLQLELEKIVDARKKVRTAKEIDAEIKQLNVEMEAAALSKQFGRCAELQKELEVLQEA 948

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             + +  L   + EE++++I  +         A       ++ + +  +
Sbjct: 949 RTHVKEDLNELEPEELDERIRAMETTIAEAMAARDFGKCGDLQVSLDAL 997


>gi|255322828|ref|ZP_05363970.1| conserved hypothetical protein [Campylobacter showae RM3277]
 gi|255300170|gb|EET79445.1| conserved hypothetical protein [Campylobacter showae RM3277]
          Length = 88

 Score = 44.1 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 47 DEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          DE+TPS   +   G+   F     GD  +FL+ ++G S  E++Q +
Sbjct: 37 DERTPSASIDKD-GYIKDFGGTFGGDVFAFLNEIVGYSKAEALQIV 81


>gi|119621342|gb|EAX00937.1| Rho-associated, coiled-coil containing protein kinase 2, isoform
            CRA_a [Homo sapiens]
          Length = 1384

 Score = 44.1 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 818  MSEKQLKQENNHLMEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 877

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 878  ELKEECEEKTKLGKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 937

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 938  EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 989

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 990  NKLKD--VQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1047

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1048 NDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1092


>gi|73960803|ref|XP_863666.1| PREDICTED: similar to CDC42-binding protein kinase alpha isoform B
           isoform 9 [Canis familiaris]
          Length = 1719

 Score = 44.1 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 49/124 (39%), Gaps = 15/124 (12%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQ 579
                        +    L  +   E ++ L +Q+R++       E       ++   ++
Sbjct: 472 LQYSTADGPLTASK---DLEIKTLKEEIENLRKQIRESSHLEQQLEEANSVRRELDDAFR 528

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQ 630
           Q  A  K+ R L +++EE+ K++ Q + + + +   +          +    E++ ++ +
Sbjct: 529 QIKAYEKQIRTLQQEREELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTE 588

Query: 631 IESQ 634
           + +Q
Sbjct: 589 LHTQ 592


>gi|320161717|ref|YP_004174942.1| putative nuclease SbcCD subunit C [Anaerolinea thermophila UNI-1]
 gi|319995571|dbj|BAJ64342.1| putative nuclease SbcCD subunit C [Anaerolinea thermophila UNI-1]
          Length = 852

 Score = 43.7 bits (101), Expect = 0.085,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 59/168 (35%), Gaps = 5/168 (2%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFLFSDFVEQ 529
                + +  E   +L+ I    + +E  + +A    ++      L +    +  +  ++
Sbjct: 144 ADRFAQQNPAERKKILSSILGLEVWEEYRERVADVRKEVEVQEKSLARDLEEIEQELRQE 203

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                     +   +   +  + L+R+           +     +    +Q   + +R  
Sbjct: 204 PARKQALEQAQKQLQSLTQQREALEREFHTLERLKTALDEQKRLLDVLRKQDAEIVRRCE 263

Query: 590 LLSRQKEEIEKQIAQVTAK-GEAEKTAILISILHEVHIQIHQIESQEA 636
            LSR+  E+E + A + A+  EA+      +   ++  ++ + E   A
Sbjct: 264 ELSRKLAELEDRKALLEARLSEADLVDERFAEYQQIRQELERWEKLAA 311



 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 83/233 (35%), Gaps = 18/233 (7%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           ++   R    + +   L     +   E     R      + +      + + Q    +  
Sbjct: 150 QNPAERK---KILSSILGLEVWEEYRERVADVRKEV-EVQEKSLARDLEEIEQELRQEPA 205

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
             +     +   L +L      L+ ++  L  ++   +E ++L   L     E      E
Sbjct: 206 RKQALEQAQKQ-LQSLTQQREALEREFHTLERLKTALDEQKRLLDVLRKQDAE-IVRRCE 263

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           E+ ++L E    + L  L+ ++ +A L      A    +RQ  ++   L   +  L +Q+
Sbjct: 264 ELSRKLAELEDRKAL--LEARLSEADLVDERF-AEYQQIRQELERWEKLAAEYLRLEQQR 320

Query: 596 EEIEKQIAQVTAKGEAEKTAILIS---------ILHEVHIQIHQIESQEAMIE 639
               +QIA   A  E EK ++             L E+  QI + + +E  +E
Sbjct: 321 SIPLQQIAAARAGLEQEKISLQQQAQKASKNALRLQELQTQIQEWQKRERDLE 373


>gi|317480497|ref|ZP_07939590.1| DNA primase [Bacteroides sp. 4_1_36]
 gi|316903342|gb|EFV25203.1| DNA primase [Bacteroides sp. 4_1_36]
          Length = 318

 Score = 43.7 bits (101), Expect = 0.085,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 11/101 (10%)

Query: 24  YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA---L 80
           Y    ++  N      W   P  +E   SF  N  +  +Y F+    G  +   S     
Sbjct: 20  YSPVKQQGINL-----WYKSPLREETEASFKVNTERNQWYDFALGKGGGIIELASHLYAT 74

Query: 81  LGCSFIESVQRLAAIA-GVPLPVVDPKIEKKEKIQTDLIRL 120
               +I  ++R+A     +         +   + +   + +
Sbjct: 75  DHIPYI--LERIAEQTPHIRPDSFSFGKQSSSEPRFQQLEI 113


>gi|301310109|ref|ZP_07216048.1| ATP-dependent chaperone protein ClpB [Bacteroides sp. 20_3]
 gi|300831683|gb|EFK62314.1| ATP-dependent chaperone protein ClpB [Bacteroides sp. 20_3]
          Length = 862

 Score = 43.7 bits (101), Expect = 0.085,   Method: Composition-based stats.
 Identities = 14/142 (9%), Positives = 44/142 (30%), Gaps = 12/142 (8%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    +L   + S                +          +   ++ +  +    
Sbjct: 388 AIDLMDEAAARLRLQIDSVPESLDEVSRRIKQLEIEREAIKRENDKSKLELLNKEIADLK 447

Query: 567 TEANIVDVR-QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI------- 618
            E      + Q  ++ +   ++ ++     E ++ +  +   +G+  K A +        
Sbjct: 448 EEETKQKAQWQSEKEQINKIQQNKI---DIENLKFEADKAEREGDYGKVAEIRYGKIKQK 504

Query: 619 -SILHEVHIQIHQIESQEAMIE 639
              + EV  ++  ++   AMI+
Sbjct: 505 EEEIREVQAKLKTMQGAAAMIK 526


>gi|296224350|ref|XP_002758029.1| PREDICTED: dystrobrevin beta [Callithrix jacchus]
          Length = 627

 Score = 43.7 bits (101), Expect = 0.085,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 57/180 (31%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +        E AL+ + +          +  + +   + E + +  +   
Sbjct: 355 PTPTKRLQYSQDIPSHLADEHALIASYVARLQHCARVLESPSRL---DEEHRLIARYAAR 411

Query: 525 DFVEQKYFL--PEEI-HQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E       P ++       +   +L+ +L+ + R+            E       + 
Sbjct: 412 LAAEAGNVTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEK 471

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 472 AQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEELMKLLKE-EEQKQAAQAT 529


>gi|291407064|ref|XP_002719844.1| PREDICTED: citron isoform 2 [Oryctolagus cuniculus]
          Length = 2070

 Score = 43.7 bits (101), Expect = 0.085,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 95/298 (31%), Gaps = 38/298 (12%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
             +   +   EKL         +  K        ++ + + +    ++   N +KD    
Sbjct: 665 QAKERAERELEKLQNREDSSEGIRKKLVEAEERRHSLENKVKRLETMERRENRLKDDIQT 724

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+               +         +++ + + K    K+ 
Sbjct: 725 KSQQIQQMADKILELEEKHREAQVSAQHLEVHLKQKEQHYEEKIKVLDNQIKKDLADKE- 783

Query: 481 SLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                +L   +  H     E+ + L++    I   +++++ L   +       K      
Sbjct: 784 -----SLENLMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANSS 838

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALALY 585
           +  +   +   E++ +L +Q       +   EA    + +  +           + L L 
Sbjct: 839 LFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKNRLLELE 898

Query: 586 KRFRL-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            R R            L RQ  E++  + +  +     +   L +    +  Q+ Q +
Sbjct: 899 TRLREVSLEHEEQKLELKRQLTELQLSLQERES-----QLTALQAARAALESQLRQAK 951


>gi|194397700|ref|YP_002037742.1| ABC transporter ATP-binding protein [Streptococcus pneumoniae G54]
 gi|194357367|gb|ACF55815.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae G54]
          Length = 633

 Score = 43.7 bits (101), Expect = 0.085,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KATAEM-SQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|73980489|ref|XP_866249.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 8 [Canis
           familiaris]
          Length = 803

 Score = 43.7 bits (101), Expect = 0.085,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575



 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421


>gi|83749655|ref|ZP_00946636.1| Replicative DNA helicase [Ralstonia solanacearum UW551]
 gi|83723657|gb|EAP70854.1| Replicative DNA helicase [Ralstonia solanacearum UW551]
          Length = 420

 Score = 43.7 bits (101), Expect = 0.085,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 64/192 (33%), Gaps = 17/192 (8%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
            R             L   K+       E ++L  L+   A        + +  +   + 
Sbjct: 4   PRRYNPAMNAPTDPQLESLKVPPHSIEAEQSVLGGLLLDNAAWDRIADFINEFDFYRYDH 63

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE----ANI 571
           + ++  +     + K      ++++L   G  E +  L      A    +       A I
Sbjct: 64  RLIFHNIGKLISQAKPADVITVYEQLQAAGKAEEVGGLAYLNALAQNTPSAANIRRYAEI 123

Query: 572 VDVRQGYQQALAL---------YKRFRLLSRQKEEIEKQ---IAQVTAKGEAEKTAILIS 619
           V  R   +Q + +           + R + +  +E E +   IA+  A+G+      +  
Sbjct: 124 VRDRGVLRQLVTIADEISAGAFNPQGRDVRQLLDEAESKVFAIAEEGARGQKG-FLEIQP 182

Query: 620 ILHEVHIQIHQI 631
           +L +V  +I ++
Sbjct: 183 LLTQVVERIDEL 194


>gi|328786255|ref|XP_395596.4| PREDICTED: serine/threonine-protein kinase Genghis Khan [Apis
           mellifera]
          Length = 1794

 Score = 43.7 bits (101), Expect = 0.086,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 106/317 (33%), Gaps = 32/317 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF-IRCYGKTAFEKLIVESLPLV 382
           D        +   L+        ++N    S G  PDS       +     L   +  L 
Sbjct: 469 DKRMQMLEEENAQLIQTLDDLKKQINMNHSSPGISPDSNNATRKLQDEINTLTKRNCELE 528

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
             L   E      N  +        L+  +  ++ +K      +AI+D+L    +  + +
Sbjct: 529 SQLKSMEIPRELRNLDNGDITKLRELEKLVRSLRLEKE-----EAIKDKLDAQEKLKLQD 583

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                   ++     +    + +L +    K KLS++   +E  L + +    ++  +  
Sbjct: 584 KELKDALTQRKLAMAEYTEVTDKLSELRQQKQKLSRQVRDKEEELEVVMQKVDSLRHDIR 643

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
           +            +KL   L +   E      +E  ++L ER   E  KQ+  +      
Sbjct: 644 KA-----------EKLRRELENRVEEAMAETSKE--RKLRER-SEEYCKQMQEETEKIRQ 689

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
            S   +A                   + ++R K E+EK   Q       +++   +  + 
Sbjct: 690 RSIGNDAGANHALAT-----------QEINRLKAEVEKLEVQYNENLNQQQSRFNL-EIR 737

Query: 623 EVHIQIHQIESQEAMIE 639
            +  Q+H+ E++  ++E
Sbjct: 738 SLQEQLHETETRRDLLE 754


>gi|212639968|ref|YP_002316488.1| Class III stress response-related ATPase [Anoxybacillus
           flavithermus WK1]
 gi|212561448|gb|ACJ34503.1| Class III stress response-related ATPase [Anoxybacillus
           flavithermus WK1]
          Length = 860

 Score = 43.7 bits (101), Expect = 0.086,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 76/209 (36%), Gaps = 16/209 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI +     R +++          +  +++    + ++    ++ + AL+       
Sbjct: 320 YRQYIEKDPALERRFQQVLVEEPTVEDTISILRGLKERFEIHHGVNIHDGALVAAATLSD 379

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-------- 547
             + +++     I   +     + + + S   E    + + +   + E            
Sbjct: 380 RYISDRFLPDKAIDLVDEACAMIRTEIDSMPTELDEVMRKMMQLEIEEAALKKEQDEASK 439

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           + L+ L +++ +    +   +A     ++  Q    L ++   L R K E+E    +   
Sbjct: 440 QRLQALSQELANLREKANAMKAQWEKEKEAIQHVRTLREQ---LERAKRELE----EAEN 492

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQE 635
             +  K A L    + ++  Q+ Q+E  E
Sbjct: 493 NYDLNKAAELRHGRIPQLEKQLKQLEQSE 521


>gi|109113267|ref|XP_001113700.1| PREDICTED: myosin-8 [Macaca mulatta]
          Length = 1937

 Score = 43.7 bits (101), Expect = 0.086,   Method: Composition-based stats.
 Identities = 31/272 (11%), Positives = 83/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHTRVVETMQSTLDAEIRSRNDALRVKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1624 DLNEM-EIQLNHANRLAAESLRNYRNTQGILKETQLHLDDALRGQEDLKEQ------LAI 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 IERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S  TE                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 VSQLQSEVEEVIQESRNTEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828


>gi|50355947|ref|NP_001002016.1| prelamin-A/C isoform C2 [Rattus norvegicus]
 gi|56551|emb|CAA47342.1| lamin A [Rattus norvegicus]
          Length = 640

 Score = 43.7 bits (101), Expect = 0.086,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 92  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTAL 151

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 152 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 207

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 208 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 253

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 254 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 310

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 311 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 364

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 365 KLALDMEIHAYRKLLEGEE 383


>gi|73960797|ref|XP_863599.1| PREDICTED: similar to CDC42-binding protein kinase alpha isoform B
           isoform 6 [Canis familiaris]
          Length = 1728

 Score = 43.7 bits (101), Expect = 0.086,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 49/124 (39%), Gaps = 15/124 (12%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQ 579
                        +    L  +   E ++ L +Q+R++       E       ++   ++
Sbjct: 472 LQYSTADGPLTASK---DLEIKTLKEEIENLRKQIRESSHLEQQLEEANSVRRELDDAFR 528

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQ 630
           Q  A  K+ R L +++EE+ K++ Q + + + +   +          +    E++ ++ +
Sbjct: 529 QIKAYEKQIRTLQQEREELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTE 588

Query: 631 IESQ 634
           + +Q
Sbjct: 589 LHTQ 592


>gi|315037242|ref|YP_004030810.1| replicative DNA helicase [Lactobacillus amylovorus GRL 1112]
 gi|325955733|ref|YP_004286343.1| replicative DNA helicase [Lactobacillus acidophilus 30SC]
 gi|312275375|gb|ADQ58015.1| replicative DNA helicase [Lactobacillus amylovorus GRL 1112]
 gi|325332298|gb|ADZ06206.1| replicative DNA helicase [Lactobacillus acidophilus 30SC]
 gi|327182561|gb|AEA31008.1| replicative DNA helicase [Lactobacillus amylovorus GRL 1118]
          Length = 464

 Score = 43.7 bits (101), Expect = 0.086,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 43/148 (29%), Gaps = 7/148 (4%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +     S  E A+L  +   P  + +    +    +     Q ++  +           
Sbjct: 6   SQQIPHDSDAEKAVLGAIFIDPEAIADASAVVQPEDFYERANQIIFQAMLDLSDRGDAID 65

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  +   L +      L  +      + L  +T  A  V+         AL +R    S+
Sbjct: 66  PLTLQDELNK---RNQLDDIGGIGYVSELAMSTPTAAHVNFYAQIVHRKALLRRLISASQ 122

Query: 594 QKEEIEKQIAQVTAKGE--AEKTAILIS 619
               I   I       +   +  + +++
Sbjct: 123 NI--ITNAINGSDDVTDILDDAESEIMN 148


>gi|195995537|ref|XP_002107637.1| hypothetical protein TRIADDRAFT_51343 [Trichoplax adhaerens]
 gi|190588413|gb|EDV28435.1| hypothetical protein TRIADDRAFT_51343 [Trichoplax adhaerens]
          Length = 7662

 Score = 43.7 bits (101), Expect = 0.086,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 17/126 (13%)

Query: 531  YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA---------TTEANIVDVRQGYQQA 581
                +E  Q+L E+   E   +L+  +R   ++             E  I  +++  + A
Sbjct: 6529 NLNKKETKQKLHEKHLQE-SAELEENLRANEIFVINQVLSECNKKKEEAIAKIKEELRDA 6587

Query: 582  LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV-------HIQIHQIESQ 634
            L          +  EE  K+I ++    E EK   L  I  E+         ++ Q    
Sbjct: 6588 LKSASTDEERQQIIEEHAKKIEKINNAHEKEKQERLKKIRKELSDIRIRRKKELQQRHRN 6647

Query: 635  EAMIEG 640
            EA+I G
Sbjct: 6648 EAIIAG 6653



 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 74/265 (27%), Gaps = 26/265 (9%)

Query: 381  LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD--QKLRYYYSQAIRDRLQQLFQK 438
            +     K   ++      +    L     N     +D   KL   +   + + L      
Sbjct: 7106 MQQRHAKETLQHEEQLKKELATALAEAQNNVATKCQDNRDKLVEQHEHQLAELLAHSDGI 7165

Query: 439  YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
               E     R  +   + +  +       +       +     ++ A      +      
Sbjct: 7166 SPLELKSRQRALEGKQQTQLAEFDKDAATKMQEAAKDVMFNLQIQHANA-RLALK----- 7219

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
                ++LA++     EL      +                 R  E+   E+  +L++   
Sbjct: 7220 ---TKQLAELSSSMQELAGQRELIAEYTDRTNEATRTAQQDR--EKIMKEMEAKLEK--- 7271

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE--IEKQIAQVTAKGEAEKTAI 616
                  A         R    Q L   +    L + K+E  +E+QIA+     E ++   
Sbjct: 7272 ----IKAEKRKAQEKQRAELAQQLEALQDELQLEQSKDEQYLEEQIAEREKVHEEQRKKK 7327

Query: 617  LISILHEVHIQIHQIESQE--AMIE 639
                L +  I+   +   E   +IE
Sbjct: 7328 --DELMKSKIEKEDLNEDEKQKLIE 7350



 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 85/285 (29%), Gaps = 28/285 (9%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            +         +L          +  +     +    +  A+++  L++ +      + R 
Sbjct: 6539 LHEKHLQESAELEENLRANEIFVINQVLSECNKKKEEAIAKIKEELRDALKSASTDEERQ 6598

Query: 423  YYSQAIR---DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
               +      +++    +K   E     R    + R R +K   QR    +++ G    +
Sbjct: 6599 QIIEEHAKKIEKINNAHEKEKQERLKKIRKELSDIRIRRKKELQQRHRNEAIIAGVDGIE 6658

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +            P+  +  +  L+  +     L +L      +          E  +
Sbjct: 6659 TEI------------PSESEADHDLLSLAKQQEELLAELRRAYAEELAADMEANSAENRR 6706

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            +L +      ++ L+         S   +  + +       A    K  R   + +++  
Sbjct: 6707 KL-DEEMEARMRALNGS------RSGDIDGALKNATDYTIAANNRNKNMRDRMQNRKDRR 6759

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIES------QEAMI 638
            K   + T   + EK     +   E   QI  ++       +EA +
Sbjct: 6760 KNRQKGTIDIDDEKLLEGNNEEVEKIKQISNLQEDADRLYEEAAL 6804


>gi|332797970|ref|YP_004459470.1| BPS2 like protein (bps2) [Acidianus hospitalis W1]
 gi|332695705|gb|AEE95172.1| BPS2 like protein (bps2) [Acidianus hospitalis W1]
          Length = 582

 Score = 43.7 bits (101), Expect = 0.087,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 74/219 (33%), Gaps = 10/219 (4%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           D L         E    GR + +  + R +    +           L       E  LL 
Sbjct: 53  DLLNVFANSGYVELDLDGRTYYRRIK-RVKNKIMESSKLLLDDDRALLLSYFSPENKLLN 111

Query: 490 TLI---NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            ++    +         ++ +++    E++     L ++  +      E I  +   +  
Sbjct: 112 QIMSGEENVEWFISATSKINELKSKKEEMETKLHNLQAEIDDLNRKHKEAIELQTKIKQI 171

Query: 547 GELLKQLDRQVRDAGLWSATTEA----NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            + + +L+++     + + TT+     N   +R   ++     +    L  +   ++++I
Sbjct: 172 EDEIARLEKEKESDKVLNKTTQTISITNENKLRDIREKIEVKKRELEDLQNRIARLDQEI 231

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQI--ESQEAMIE 639
               +    E        L E++ Q+ +I  +  EA IE
Sbjct: 232 KNKESLASPEIKQSYERQLQEINTQLQKITSQRNEAEIE 270


>gi|331000708|ref|ZP_08324359.1| Zinc-binding domain of primase-helicase [Parasutterella
           excrementihominis YIT 11859]
 gi|329570623|gb|EGG52341.1| Zinc-binding domain of primase-helicase [Parasutterella
           excrementihominis YIT 11859]
          Length = 341

 Score = 43.7 bits (101), Expect = 0.087,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 17/125 (13%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVD-WDRRKTNAVKGDYWAC-CPFHD--EKTPSFHCND 57
              +  +  +L         G Y         +          CP+    ++   F   D
Sbjct: 9   RISQSTVNTILSRAQ-----GHYKSILLSAGADETIFKTKNLECPWCAGVDR---FSYTD 60

Query: 58  S--KGFYYCFSCHVK-GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114
              KG  +C  C    G  +  L  +    ++++++ +A    +P+         K + Q
Sbjct: 61  KFGKGDSFCRHCGYHSG--VDLLMKIKKFGYVDALRFMARFLNLPIHEEKTYRVTKTQEQ 118

Query: 115 TDLIR 119
           +  + 
Sbjct: 119 SSPVE 123


>gi|119571567|gb|EAW51182.1| hCG27198, isoform CRA_g [Homo sapiens]
          Length = 1248

 Score = 43.7 bits (101), Expect = 0.087,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 79/260 (30%), Gaps = 9/260 (3%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
            +      ++  VD   KR  +        E+       +   +   D +      Q ++
Sbjct: 616 EWRLKYERAVREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADSEESQRALQQLK 675

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            + Q+L  +             +N          QR   S L +     +    +   L 
Sbjct: 676 KKCQRLTAELQDTKLHLEGQQVRNHEL----EKKQRRFDSELSQAHEEAQREKLQREKLQ 731

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                  +L E +     +   + ++      + S   E +    +E           + 
Sbjct: 732 R--EKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQ 789

Query: 550 LKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
           L+ L+ +V+D           I     ++Q   Q    Y+  + + R+K E+E ++A ++
Sbjct: 790 LRDLEAKVKDQEEELDEQAGTIQMLEQLKQMEVQLEEEYEDKQKVLREKRELEGKLATLS 849

Query: 607 AKGEAEKTAILISILHEVHI 626
            +           +  ++  
Sbjct: 850 DQVNRRDFESEKRLRKDLKR 869



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/286 (10%), Positives = 78/286 (27%), Gaps = 16/286 (5%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +   R   +    +   + L       K++ E +  +      ++        +    + 
Sbjct: 718 EEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQES 777

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                   ++ +L+ L  K   +                 K    +L +    K K+ ++
Sbjct: 778 KDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQLKQMEVQLEEEYEDKQKVLRE 837

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEI 537
               E  L            E  + L         L      +               ++
Sbjct: 838 KRELEGKLATLSDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQL 897

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             +L E  F          V+         E   + +    +   AL ++   L R+K E
Sbjct: 898 KNQLEESEFT-----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNE 952

Query: 598 IEKQIAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQ 634
           I+ ++ +                 + +  ++ ++++  Q+ +   +
Sbjct: 953 IQNRLEEDQEDMNELMKKHKAAVAQASRDLAQINDLQAQLEEANKE 998



 Score = 38.3 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 988  LQAQLEEANKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFER 1044

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1045 TQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1104


>gi|317503227|ref|ZP_07961285.1| replicative DNA helicase DnaB [Prevotella salivae DSM 15606]
 gi|315665640|gb|EFV05249.1| replicative DNA helicase DnaB [Prevotella salivae DSM 15606]
          Length = 508

 Score = 43.7 bits (101), Expect = 0.088,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 54/175 (30%), Gaps = 12/175 (6%)

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            + +     +  ++     G L  + +  E A++  L+          + +    +    
Sbjct: 4   NNSNTTKRRKSSVKVDNTYGHLQPQATDIERAVIGALMIDKDAFSLVSEIIRPETFYEPR 63

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE-------LLKQLDRQVRDAGLWSATT 567
            QK++  + +  + ++      + + L  +G  +       LL   DR    A +     
Sbjct: 64  NQKIYQAIQNLNMTERPVDIMTVTEELKSQGTIDDIGGPGYLLDISDRVASSANVEYHAH 123

Query: 568 EANIVDVRQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
                 + +   Q         +     +    +E E  + +++ K   +    +
Sbjct: 124 ILAQKFLARQLIQFASRVEEKAFDDTVDVDALMQEAEGSLFEISQKNMKQDYTQI 178


>gi|307212786|gb|EFN88457.1| Myosin heavy chain, muscle [Harpegnathos saltator]
          Length = 2228

 Score = 43.7 bits (101), Expect = 0.088,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 81/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1853 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1912

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    + +  +   + E           A+  E 
Sbjct: 1913 NKANAEAQKNIKRYQQQLKDVQTALEEEQRARDEARELLGISER-------RANALQNEL 1965

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1966 EESRTLLEQADRGRRQAEQELADCHEQLNELSAQNASISGAKRKLEAELQTLHSDLDELL 2025

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E QI ++  + +  +   L
Sbjct: 2026 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQVRLDEAEANAL 2085

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 2086 KGGKKAIQKLEQRVRELENE 2105



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 67/225 (29%), Gaps = 12/225 (5%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + + D ++ L  +            K   R   +K   Q  ++ +    +  +   LR  
Sbjct: 1783 KNLADEVKDLLDQIGEGGRNIHEIEKARKRLEAEKDELQAALEEAEAALEQEENKVLRSQ 1842

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
              L  +     I +   ++  +        Q+    + +    +     E +  +     
Sbjct: 1843 LELSQV--RQEIDRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEA 1900

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK--------EE 597
                L+        A   +           +  Q AL   +R R  +R+           
Sbjct: 1901 DINELEIALDHANKANAEAQKNIKRYQQQLKDVQTALEEEQRARDEARELLGISERRANA 1960

Query: 598  IEKQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQEAMIEG 640
            ++ ++ +     E            L + H Q++++ +Q A I G
Sbjct: 1961 LQNELEESRTLLEQADRGRRQAEQELADCHEQLNELSAQNASISG 2005



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 69/221 (31%), Gaps = 13/221 (5%)

Query: 428  IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP--SQRLMQSSLVKGKLSKKPSLREA 485
            I +R     Q  + E         +  R  +Q+     ++L + S     +S      EA
Sbjct: 1953 ISERRANALQNELEESRTLLEQADRGRRQAEQELADCHEQLNELSAQNASISGAKRKLEA 2012

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L     +   +L E        +    +  +L   L     +      E++ + L  + 
Sbjct: 2013 ELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADEL--RAEQDHAQTQEKLRKALETQI 2070

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
                ++  + +           +     VR+   +     +R     +   + E++I ++
Sbjct: 2071 KELQVRLDEAEANALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKSERRIKEL 2130

Query: 606  TAKGEAEK---------TAILISILHEVHIQIHQIESQEAM 637
            + + + ++            L   +     QI + E   A+
Sbjct: 2131 SFQADEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL 2171


>gi|221231941|ref|YP_002511093.1| chromosome partition protein [Streptococcus pneumoniae ATCC 700669]
 gi|220674401|emb|CAR68951.1| putative chromosome partition protein [Streptococcus pneumoniae
           ATCC 700669]
          Length = 1179

 Score = 43.7 bits (101), Expect = 0.088,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E  +E A +  +   L+ L   +       +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAEEEASLDSEEVALKTLQDEMARLTESLEAIKSQGEQARIQEQGLFLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  I  + +G  QA      +R   ++  K+ +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEEIDRLSEGDWQADKENCQERLAAIASDKQNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 833


>gi|169351469|ref|ZP_02868407.1| hypothetical protein CLOSPI_02249 [Clostridium spiroforme DSM 1552]
 gi|169291691|gb|EDS73824.1| hypothetical protein CLOSPI_02249 [Clostridium spiroforme DSM 1552]
          Length = 458

 Score = 43.7 bits (101), Expect = 0.088,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 58/170 (34%), Gaps = 12/170 (7%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E +LL  ++    I  +   +  +  + +   Q ++  + +   +        +   L 
Sbjct: 12  AERSLLGAMLISKDICIDILNKTVEDDFYDINHQNIFKAMAAINEDGMPVDVTTVTSYLM 71

Query: 543 ERG----------FGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRL 590
           +               L + +              +  I+   +R+  + A + Y     
Sbjct: 72  DHNQLDKIGGVDYLFRLSESVPTVAHSEYYLKILHDKAILRRIIRETTRIAESAYDDVDN 131

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           +    +E E+ I QVT    A +   + S++  V  +++ ++  +  I G
Sbjct: 132 IDAFIDETERTILQVTQDRSAGEFREIRSVIKSVTDRLNMLQKIDGNISG 181


>gi|148708022|gb|EDL39969.1| mCG133041 [Mus musculus]
          Length = 1728

 Score = 43.7 bits (101), Expect = 0.088,   Method: Composition-based stats.
 Identities = 33/325 (10%), Positives = 99/325 (30%), Gaps = 53/325 (16%)

Query: 357  EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            +D  S      K A  + + +            +         E   L+      +  ++
Sbjct: 937  KDTLSLSLAEEKEAAARWMEQQK-----ELLTRSAADREALQGEIQNLKQERDESLLQLE 991

Query: 417  DQKLRYYYSQAIRDRL--QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
             +  +    +     L  ++L   +            +  +         + +++  V+ 
Sbjct: 992  HEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQF 1051

Query: 475  KLSKKPSLREAALLL-----TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            + +     REA  L            ++ +E  +  A +   +  L +L   L +    +
Sbjct: 1052 EEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESR 1111

Query: 530  KYFLPEEIHQR--LCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
            +    E +  R  L +     ++L+  + ++R +   +   +A++   ++  +Q L L +
Sbjct: 1112 EGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQ 1171

Query: 587  ---------------RFRLLSRQKEEIEKQIAQ-----------------------VTAK 608
                           R + L R + +  +++ +                           
Sbjct: 1172 EAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVS 1231

Query: 609  GEAEKTAILISILHEVHIQIHQIES 633
             +A+     +    E+  Q+ + ++
Sbjct: 1232 RDAQHRQKNLQESLELQRQVAEAQA 1256


>gi|19335604|gb|AAK55759.1| alpha helical coiled-coil rod protein [Homo sapiens]
 gi|55961322|emb|CAI17405.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
 gi|168985819|emb|CAQ10597.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
          Length = 782

 Score = 43.7 bits (101), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 567 LQLEVARQCQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 626

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 627 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 686


>gi|118365373|ref|XP_001015907.1| Viral A-type inclusion protein repeat containing protein
           [Tetrahymena thermophila]
 gi|89297674|gb|EAR95662.1| Viral A-type inclusion protein repeat containing protein
           [Tetrahymena thermophila SB210]
          Length = 1285

 Score = 43.7 bits (101), Expect = 0.088,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 92/275 (33%), Gaps = 15/275 (5%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
            +++   +         +   +           E +  ++     I++  L+  Y   I 
Sbjct: 328 EWQEKYKKMDNEYKKQIEGLEQIIVNIKEKHSKEKKDLIEKYEMQIQN--LKDSYENKIA 385

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             +     +         +        ++Q    ++   S +         +LRE   L 
Sbjct: 386 LLIADYETRIKLLQEELRQKNILIQDLKEQLENLRKTSSSEIEYLNARLSQALREIDNLK 445

Query: 490 TLINHPAI----LQEQYQELADI-RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           + I++ +     L++  QEL        +E   L   +     +      E+   +L   
Sbjct: 446 SKIDNLSAEMVALKKYQQELEKERDRLVDENNILRDTVKKQNEDYIKLKEEK---QLEIS 502

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              + + +L++Q+RD   +      +     + + +   L  R   L+   E + + + +
Sbjct: 503 KLSKRISELEQQLRDREDYWQKKLDD-----EIFAREQELRNRVNELTDHYENLLRNLRK 557

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                    ++    I+ E+  ++ Q+E + A+++
Sbjct: 558 ELEDALKSLSSEKNQIIEELRQRVKQLEEENAILK 592



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/306 (10%), Positives = 92/306 (30%), Gaps = 31/306 (10%)

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
             +R +D +  +        +                  E         +   +      
Sbjct: 602 WSTRYKDLEDMMNRKISELTKYYEDLLKAAERRRINDLDELERLRVKQLKDLEDKLNSEM 661

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
              I+    +    + + D+ Q   Q+         +  ++    + Q+   Q       
Sbjct: 662 QRIIE---EKDRLFKEMNDKFQHHIQQLEQNWQSKYKEMEQLKNKKIQELEDQHRKTIDS 718

Query: 472 VKGKLSKK-------PSLREAALLLTLINH-----PAILQEQYQELADI----RYDNNEL 515
           +K +  ++          +   L   L N+       + Q+  QEL  +         +L
Sbjct: 719 MKKEHQRQLDELRNYYEEQIRKLKAQLENNARGVIDDLKQKHQQELDRLKNMYEDQIKKL 778

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVD 573
            + W       +++     + +  ++ +    + +LL+Q++++ +         +     
Sbjct: 779 NQEWEIKLQKTIDEYERKIKNLMNQMEQERLKYQQLLQQMEQKYQQLLQQMEDMKQKYEM 838

Query: 574 VRQGYQQALALYKRFR-LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV----HIQI 628
                +Q +   K     L ++  ++E +I ++      EK   L     E       +I
Sbjct: 839 EISSLKQDIQNLKNEIINLKQKISDLEARIRELE-----EKYRKLKQEYQEFQRMHQREI 893

Query: 629 HQIESQ 634
            ++E +
Sbjct: 894 EKLEQE 899


>gi|83405531|gb|AAI10536.1| Coiled-coil alpha-helical rod protein 1 [Homo sapiens]
          Length = 782

 Score = 43.7 bits (101), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 567 LQLEVARQCQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 626

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 627 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 686


>gi|311114124|ref|YP_003985345.1| hypothetical protein HMPREF0421_20238 [Gardnerella vaginalis ATCC
           14019]
 gi|310945618|gb|ADP38322.1| hypothetical protein HMPREF0421_20238 [Gardnerella vaginalis ATCC
           14019]
          Length = 885

 Score = 43.7 bits (101), Expect = 0.088,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 63/212 (29%), Gaps = 16/212 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           ++    ++ +  +K     +      KK          +++ ++      K ++      
Sbjct: 162 AEDTARKINEAVEKKNNAENSIAETNKKIETETQNIANAEQRIEEKSKAVKEAE------ 215

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                       +  E  Q    +    +E +     L  D  +      E++     E 
Sbjct: 216 --------KDKKVTDEAKQNADQVNKIRSEEKAAKDELAEDAKDDNEETAEDLAN--EEE 265

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              +L  +L    + +       E    + +Q    A  +  +   +++Q +  E+ +  
Sbjct: 266 AKSKLEAELAEAKQKSESTKVEAEKLEKEAQQKEAAAEGVDNKIENITKQIKTAEENLKT 325

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           + A  +  K   L   +     Q  + E   A
Sbjct: 326 LDADNDQNKINQLKEKVASTKKQAEEAEKTAA 357


>gi|224436328|ref|ZP_03657354.1| hypothetical protein HcinC1_00235 [Helicobacter cinaedi CCUG 18818]
 gi|313142849|ref|ZP_07805042.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313127880|gb|EFR45497.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 319

 Score = 43.7 bits (101), Expect = 0.088,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 47  DEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAAIAGVPLPVVDP 105
           DE+TPS   N   G  + F     GD  SFL    G  +  ++++    +  + +P    
Sbjct: 29  DERTPSAFIN-QNGHIHDFGSDWHGDFPSFLKEFRGFHNIGDAIREAQRLLQMEIPFDFA 87

Query: 106 KIEKKEKIQTD 116
             +K E+ + +
Sbjct: 88  DFDKSEQKKKE 98


>gi|116328481|ref|YP_798201.1| endopeptidase Clp, ATP-dependent proteolytic subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116331211|ref|YP_800929.1| endopeptidase Clp, ATP-dependent proteolytic subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116121225|gb|ABJ79268.1| Endopeptidase Clp, ATP-dependent proteolytic subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116124900|gb|ABJ76171.1| Endopeptidase Clp, ATP-dependent proteolytic subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 859

 Score = 43.7 bits (101), Expect = 0.088,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
            ++   F+  K     +            + ++LDR  +         EA   +      
Sbjct: 381 RYIVDRFLPDKAVDLIDEASSKMRIEIDSMPEELDRASKRIQSLKIEREALKKE------ 434

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           Q  A  +R + L +   E E+    + A+ + EK+ IL   L ++  +I + ++ EA  E
Sbjct: 435 QDPASKERLKSLEKDLAEQEQNFQTLKARWDLEKSKIL--RLKQIKEEIEKYKNLEADAE 492

Query: 640 GFGK 643
             G+
Sbjct: 493 RKGE 496


>gi|13124879|ref|NP_002465.1| myosin-11 isoform SM1A [Homo sapiens]
 gi|13432177|sp|P35749|MYH11_HUMAN RecName: Full=Myosin-11; AltName: Full=Myosin heavy chain 11;
            AltName: Full=Myosin heavy chain, smooth muscle isoform;
            AltName: Full=SMMHC
 gi|119574309|gb|EAW53924.1| myosin, heavy polypeptide 11, smooth muscle, isoform CRA_a [Homo
            sapiens]
 gi|119574310|gb|EAW53925.1| myosin, heavy polypeptide 11, smooth muscle, isoform CRA_a [Homo
            sapiens]
 gi|168273110|dbj|BAG10394.1| myosin-11 [synthetic construct]
 gi|270048016|gb|ACZ58373.1| myosin, heavy chain 11, smooth muscle isoform 1 [Homo sapiens]
          Length = 1972

 Score = 43.7 bits (101), Expect = 0.088,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 94/265 (35%), Gaps = 10/265 (3%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     +     E E        ++ ELE  L      +++++ R    QA R ++ Q  
Sbjct: 893  QEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQM 952

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                 +        +K    +       + ++  ++          +E  LL   I+   
Sbjct: 953  LDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKLSKERKLLEERISDLT 1012

Query: 497  I-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEIHQRLCER--GFGELLK 551
              L E+ ++  ++    N+ + + S L       E+     E++ ++L      F E + 
Sbjct: 1013 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIA 1072

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
             L  Q+ +  +  A  E  +          +A   +     ++  E+E  I+ +    ++
Sbjct: 1073 DLQAQIAELKMQLAKKEEELQAALARLDDEIA---QKNNALKKIRELEGHISDLQEDLDS 1129

Query: 612  EKTAILISILH--EVHIQIHQIESQ 634
            E+ A   +     ++  ++  ++++
Sbjct: 1130 ERAARNKAEKQKRDLGEELEALKTE 1154


>gi|310792548|gb|EFQ28075.1| hypothetical protein GLRG_03219 [Glomerella graminicola M1.001]
          Length = 738

 Score = 43.7 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-----RQKEEIEKQI 602
             ++++  +     L     +A I   RQ   +A A  K+          R+ +EI ++I
Sbjct: 445 AAVEEIATRRVQPVLDEINEKAAIERERQELLKAEAEAKKRDEAKQKERDREIKEINRKI 504

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +   + E E+       L     ++    ++E
Sbjct: 505 IEHEKQEEKERKHREKQELKAKKEEVKAARAEE 537


>gi|297668044|ref|XP_002812270.1| PREDICTED: LOW QUALITY PROTEIN: dystrobrevin beta-like [Pongo
           abelii]
          Length = 619

 Score = 43.7 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +        E AL+ + +             + +   + E + +  +   
Sbjct: 347 PTPTKRLQYSQDIPSHLADEHALIASYVARLQHCARVLDSPSRL---DEEHRLIARYAAR 403

Query: 525 DFVEQKYFL--PEEI-HQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E       P ++       +   +L+ +L+ + R+            E       + 
Sbjct: 404 LAAEAGNVTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEK 463

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 464 AQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEELMKLLKE-EEQKQAAQAT 521


>gi|297617555|ref|YP_003702714.1| DnaB domain protein helicase [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145392|gb|ADI02149.1| DnaB domain protein helicase domain protein [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 453

 Score = 43.7 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 12/129 (9%), Positives = 43/129 (33%), Gaps = 6/129 (4%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  ++  +++      E Y  L    + + + Q ++  + S + ++      E+ +   +
Sbjct: 18  ERRVISAMLHSEEACIEAYDSLKMQDFYHPKHQVVFELVCSLYEQEIRPTYVELLKEAHK 77

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEAN------IVDVRQGYQQALALYKRFRLLSRQKEE 597
                  + ++        +                 R    +A   +    L+ R+ ++
Sbjct: 78  LNLFRDPRDIEELKYIVEHFIDDENVRYWIKRVRDKSRLRKFEAFLRHYYQVLIEREVDD 137

Query: 598 IEKQIAQVT 606
           +E+ + +  
Sbjct: 138 VEQLLMEAE 146


>gi|291407062|ref|XP_002719843.1| PREDICTED: citron isoform 1 [Oryctolagus cuniculus]
          Length = 2055

 Score = 43.7 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 95/298 (31%), Gaps = 38/298 (12%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
             +   +   EKL         +  K        ++ + + +    ++   N +KD    
Sbjct: 665 QAKERAERELEKLQNREDSSEGIRKKLVEAEERRHSLENKVKRLETMERRENRLKDDIQT 724

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+               +         +++ + + K    K+ 
Sbjct: 725 KSQQIQQMADKILELEEKHREAQVSAQHLEVHLKQKEQHYEEKIKVLDNQIKKDLADKE- 783

Query: 481 SLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                +L   +  H     E+ + L++    I   +++++ L   +       K      
Sbjct: 784 -----SLENLMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANSS 838

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALALY 585
           +  +   +   E++ +L +Q       +   EA    + +  +           + L L 
Sbjct: 839 LFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKNRLLELE 898

Query: 586 KRFRL-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            R R            L RQ  E++  + +  +     +   L +    +  Q+ Q +
Sbjct: 899 TRLREVSLEHEEQKLELKRQLTELQLSLQERES-----QLTALQAARAALESQLRQAK 951


>gi|149006209|ref|ZP_01829921.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|307127355|ref|YP_003879386.1| ABC transporter [Streptococcus pneumoniae 670-6B]
 gi|147761986|gb|EDK68948.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|306484417|gb|ADM91286.1| ABC transporter [Streptococcus pneumoniae 670-6B]
 gi|332075068|gb|EGI85539.1| ABC transporter family protein [Streptococcus pneumoniae GA17545]
          Length = 633

 Score = 43.7 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KATAEM-SQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|41872583|ref|NP_004841.2| rho-associated protein kinase 2 [Homo sapiens]
 gi|269849761|sp|O75116|ROCK2_HUMAN RecName: Full=Rho-associated protein kinase 2; AltName: Full=Rho
            kinase 2; AltName: Full=Rho-associated,
            coiled-coil-containing protein kinase 2; AltName:
            Full=p164 ROCK-2
          Length = 1388

 Score = 43.7 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 822  MSEKQLKQENNHLMEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 881

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 882  ELKEECEEKTKLGKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 941

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 942  EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 993

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 994  NKLKD--VQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1051

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1052 NDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1096


>gi|326931234|ref|XP_003211738.1| PREDICTED: homeobox protein cut-like 1-like, partial [Meleagris
           gallopavo]
          Length = 1403

 Score = 43.7 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 29/276 (10%), Positives = 94/276 (34%), Gaps = 17/276 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 43  DPVPALDLGQQLQLKVQRMHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 102

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     +A          
Sbjct: 103 EQTLKNQAENIALEKEQKLQNDFAEKERKLQETQMSTASKLEEAEHKVQALQTALEKTRT 162

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK-- 551
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 163 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANKSLQLATQ 222

Query: 552 -----QLDRQV-----RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
                 +++ +         +  A  E  I  + +  Q+      + R  S  Q  ++E+
Sbjct: 223 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQGSLTKLRENSSSQISQLEQ 282

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE 635
           Q+    +  +  E+     +   EV  +++ ++S E
Sbjct: 283 QLTAKNSTLKQLEEKLKGQADYEEVKKELNILKSME 318


>gi|297260956|ref|XP_001083662.2| PREDICTED: myosin-9-like [Macaca mulatta]
          Length = 1879

 Score = 43.7 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 86/265 (32%), Gaps = 28/265 (10%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EKL ++     +     E E        ++ ELE    +    +++++ R  + Q  + 
Sbjct: 799  AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQTEKK 858

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++QQ  Q+   +        +K    +       + ++   +  +       +E  LL  
Sbjct: 859  KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEEQIILEDQNCKLAKEKKLLE- 917

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +                      E    +L 
Sbjct: 918  -----DRIAEFTTNLTEEEEKSKSLAKLKNK--------------------HEAMITDLE 952

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L R+ +       T      D      Q   L  +   L  Q  + E+++    A+ E
Sbjct: 953  ERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVE 1012

Query: 611  AEKTAILIS--ILHEVHIQIHQIES 633
             E     ++   + E+  QI +++ 
Sbjct: 1013 EEAAQKNMALKKIRELESQISELQE 1037



 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 70/228 (30%), Gaps = 15/228 (6%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            + ++ +    + +R+   +L  +            K     +D +       ++     K
Sbjct: 1498 QSEEKKKQLVRQVREMEAELEDERKQRSMAVAARKKLEMDLKDLEAHIDSANKNREEAIK 1557

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +K   +    +  L         + + LA  + +  +L+ + + +     E       
Sbjct: 1558 QLRKLQAQMKDCMREL---DDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERA 1614

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +   +   EL  ++        L           + Q  ++         L++ + 
Sbjct: 1615 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELINDRL 1671

Query: 596  EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIESQ 634
            ++   QI Q+      E++           L     E+ +++ ++E  
Sbjct: 1672 KKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKVKLQEMEGT 1719


>gi|119623766|gb|EAX03361.1| coiled-coil alpha-helical rod protein 1, isoform CRA_a [Homo
           sapiens]
 gi|119623767|gb|EAX03362.1| coiled-coil alpha-helical rod protein 1, isoform CRA_a [Homo
           sapiens]
          Length = 782

 Score = 43.7 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 567 LQLEVARQCQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 626

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 627 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 686


>gi|127758|sp|P05659|MYSN_ACACA RecName: Full=Myosin-2 heavy chain, non muscle; AltName: Full=Myosin
            II heavy chain, non muscle
 gi|5586|emb|CAA68663.1| myosin heavy chain [Acanthamoeba castellanii]
          Length = 1509

 Score = 43.7 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 65/218 (29%), Gaps = 17/218 (7%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             R +   +    +           A   + K     L +         +  +  E  L  
Sbjct: 1225 QRRKLNTRISELQSELENAPKTGGASSEEVKRLEGELERLEEELLTAQEARAAAEKNLDK 1284

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
              +    + QE      D      + +KL + L    ++      E+  +   +     L
Sbjct: 1285 ANLELEELRQEADDAARDNDKLVKDNRKLKADLDEARIQ---LEEEQDAKSHADSSSRRL 1341

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            L +++   +     ++  +          ++  +L      + R+  + E+Q+  + A+ 
Sbjct: 1342 LAEIEELKKRVAKETSDKQKAQDQKANYQRENESLKADRDSIERRNRDAERQVRDLRAQL 1401

Query: 610  E------------AEKTAILISILHE--VHIQIHQIES 633
            +             EK+      L +  +  +   +ES
Sbjct: 1402 DDALSRLDSEKRAKEKSVEANRELKKVVLDRERQSLES 1439



 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 525 DFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
               +         + + +  +   +L K+L              +    D  +  +   
Sbjct: 842 YVKARPLISQRNFQKEIDDLKKQVKDLEKELAALKDANAKLDKEKQLAEEDADKLEKDLA 901

Query: 583 ALYKRFRLLSRQKEEIEK--QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           AL  +   L  +K ++E+   + Q    G  E+     S  +++  Q  ++E++
Sbjct: 902 ALKLKILDLEGEKADLEEDNALLQKKVAGLEEELQEETSASNDILEQKRKLEAE 955


>gi|305665800|ref|YP_003862087.1| hypothetical protein FB2170_05905 [Maribacter sp. HTCC2170]
 gi|88710566|gb|EAR02798.1| hypothetical protein FB2170_05905 [Maribacter sp. HTCC2170]
          Length = 1157

 Score = 43.7 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 92/282 (32%), Gaps = 12/282 (4%)

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            ED    +    + +  K + ES+   +   +   E        E+           + +
Sbjct: 495 NEDELRKMELQKQQSIIKNMDESVERFEEQQESLKEISQKQKEKEQLNYSDE-NQIKDFL 553

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           + Q+ +    Q     L++  +K            ++  R   +   ++RL++       
Sbjct: 554 RKQQNQEDLMQKFSKELRENLEKTTNNEELNSLLKERLERQELEARKNERLLEELDKIAD 613

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFLFSDFVEQKYF 532
              K  L +   L  L N     +   ++L ++    Y   +  +L   L     +Q   
Sbjct: 614 KIDKEELAKR--LEELANKQKNSKRNLEQLLELTKRYYVTEKAAQLADELKKLSKKQSLL 671

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             +++ + +  +   EL    +    + G      E +  D+++         KR   + 
Sbjct: 672 SEQKLKEEISAQEQRELNVDFEELANELG----ELEKDNQDLKKPI-DLEVNKKREESIK 726

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           + ++E    I  V  K +    + L     E+  Q  +  +Q
Sbjct: 727 QDQQEALDAIK-VNLKSDEPSDSQLKDKGAEIAKQKQKSAAQ 767


>gi|332812616|ref|XP_525689.3| PREDICTED: rho-associated protein kinase 2 [Pan troglodytes]
          Length = 1388

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 822  MSEKQLKQENNHLMEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 881

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 882  ELKEECEEKTKLGKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 941

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 942  EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 993

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 994  NKLKD--VQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1051

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1052 NDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1096


>gi|301611603|ref|XP_002935314.1| PREDICTED: transcription elongation regulator 1-like isoform 1
           [Xenopus (Silurana) tropicalis]
          Length = 1062

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 36/360 (10%), Positives = 96/360 (26%), Gaps = 42/360 (11%)

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           +     R+ +      +  +D  +  +  A     +       G           +D   
Sbjct: 523 VWTGDERVFFYNPTTRLSMWDRPEDLIGRADVDKIIQEPPHKRGMEDGKKYYKEDQD--- 579

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                 +    K         +   +   E       + +A  E  +    + +K  + R
Sbjct: 580 SAEDANEDEPIKAKKRKKDDPEADKETAMEA------EIKAARERAIVPLDSRMK--QFR 631

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               +          ++                  +       +       + K +K   
Sbjct: 632 DMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERREKKNKIMQ 691

Query: 482 LREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKL-----WSFLFSDF--------- 526
            +E      ++    I  +  + E A     +   + +        LF+++         
Sbjct: 692 AKED--FKKMMEDGKINARSTFSEFAGKHAKDARFKAIEKMKDRETLFNEYMVAARKKEK 749

Query: 527 ------VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
                  E+      ++   L   G     K  D+   D    +  + A   ++ + Y +
Sbjct: 750 EDSKNKGEKVRSDFFDLLSSLHLDGQSRWSKIKDKIENDLRYKAVESSAAREELFKLYIE 809

Query: 581 ALALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            +       + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 810 KIVKNLDTEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 864


>gi|270296241|ref|ZP_06202441.1| ATP-dependent chaperone ClpB [Bacteroides sp. D20]
 gi|270273645|gb|EFA19507.1| ATP-dependent chaperone ClpB [Bacteroides sp. D20]
          Length = 864

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 70/212 (33%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++    +      +  +++    + +      +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVMVNEPDTLSTISILRGLKERYENHHHVRIKDDAIIAAVELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      +     +          +   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDKPKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           +     L     + N    +  +Q    L  + +    + E ++ +  +   +G+  +  
Sbjct: 437 EQIGKELAELKEQENSYKAK--WQSEKTLVNKIQQNKVEIENLKFEADKAEREGDYGRVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L   + E   ++H+++  +AMI+
Sbjct: 495 EIRYGKLQALNQEIEETQQKLHEMQGDKAMIK 526



 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 70/264 (26%), Gaps = 34/264 (12%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + +  +DM              +    +   +K     I        
Sbjct: 220 RILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERLKAVINEVKKSEGDI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E    + ++N P  L                   +   L   +    +        R+ +
Sbjct: 328 ERRFQIVMVNEPDTLSTI---------------SILRGLKERYENHHHV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + D  L     +       +   +  ++ +    +SR+ +++E +  
Sbjct: 366 DAIIAAVELSNRYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIERE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQ 627
            +  + +  K   +   L E+  Q
Sbjct: 426 AIKRENDKPKLEQIGKELAELKEQ 449


>gi|191252808|ref|NP_001028510.2| RIMS-binding protein 3 [Mus musculus]
          Length = 1606

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 4/105 (3%)

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ---GYQQALALYKRFRL 590
           P         R   +L  +L+ +                 +R+     +Q LA + R + 
Sbjct: 24  PAAAVLEEQRRELEKLRAELEGERARGRSERRRFATQTRQLRESAEQERQQLADHLRSKW 83

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +R+  E+ +Q+ +   +    +   L+        Q+ Q+  QE
Sbjct: 84  EARRLREL-RQLQEEVQREREAEIRQLLRWKEAEMRQLQQLLHQE 127


>gi|183602321|ref|ZP_02963688.1| replicative DNA helicase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219682677|ref|YP_002469060.1| replicative DNA helicase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190255|ref|YP_002967649.1| replicative DNA helicase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241195661|ref|YP_002969216.1| replicative DNA helicase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183218535|gb|EDT89179.1| replicative DNA helicase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620327|gb|ACL28484.1| replicative DNA helicase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248647|gb|ACS45587.1| replicative DNA helicase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250215|gb|ACS47154.1| replicative DNA helicase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289177970|gb|ADC85216.1| Replicative DNA helicase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295793242|gb|ADG32777.1| replicative DNA helicase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 459

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 39/124 (31%), Gaps = 3/124 (2%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++       E A L  ++     + E  Q ++   +   + Q ++  +   F   +    
Sbjct: 23  RVPPHDDNAEMATLGGMLMSKDAIGEVSQIVSVDDFYEPKHQTIYEAIIGKFSASEPADA 82

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +  RL + G    L ++        L ++   A             AL +R      +
Sbjct: 83  VTVANRLSDSGD---LDKVGGIDYLHSLIASVPTAANASYYAEIVHQRALLRRVIASGTK 139

Query: 595 KEEI 598
             ++
Sbjct: 140 IAQL 143


>gi|168492009|ref|ZP_02716152.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae CDC0288-04]
 gi|168493058|ref|ZP_02717201.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae CDC3059-06]
 gi|221231851|ref|YP_002511003.1| ABC transporter ATP-binding protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225854610|ref|YP_002736122.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae JJA]
 gi|183573744|gb|EDT94272.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae CDC0288-04]
 gi|183576688|gb|EDT97216.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae CDC3059-06]
 gi|220674311|emb|CAR68854.1| ABC transporter ATP-binding protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225723317|gb|ACO19170.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae JJA]
          Length = 633

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KATAEM-SQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|160892139|ref|ZP_02073142.1| hypothetical protein BACUNI_04602 [Bacteroides uniformis ATCC 8492]
 gi|317480862|ref|ZP_07939943.1| ATP-dependent chaperone ClpB [Bacteroides sp. 4_1_36]
 gi|156858617|gb|EDO52048.1| hypothetical protein BACUNI_04602 [Bacteroides uniformis ATCC 8492]
 gi|316902947|gb|EFV24820.1| ATP-dependent chaperone ClpB [Bacteroides sp. 4_1_36]
          Length = 864

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 70/212 (33%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++    +      +  +++    + +      +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVMVNEPDTLSTISILRGLKERYENHHHVRIKDDAIIAAVELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      +     +          +   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDKPKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           +     L     + N    +  +Q    L  + +    + E ++ +  +   +G+  +  
Sbjct: 437 EQIGKELAELKEQENSYKAK--WQSEKTLVNKIQQNKVEIENLKFEADKAEREGDYGRVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L   + E   ++H+++  +AMI+
Sbjct: 495 EIRYGKLQALNQEIEETQQKLHEMQGDKAMIK 526



 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 70/264 (26%), Gaps = 34/264 (12%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + +  +DM              +    +   +K     I        
Sbjct: 220 RILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERLKAVINEVKKSEGDI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E    + ++N P  L                   +   L   +    +        R+ +
Sbjct: 328 ERRFQIVMVNEPDTLSTI---------------SILRGLKERYENHHHV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + D  L     +       +   +  ++ +    +SR+ +++E +  
Sbjct: 366 DAIIAAVELSNRYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIERE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQ 627
            +  + +  K   +   L E+  Q
Sbjct: 426 AIKRENDKPKLEQIGKELAELKEQ 449


>gi|119601247|gb|EAW80841.1| spectrin repeat containing, nuclear envelope 2, isoform CRA_d [Homo
            sapiens]
          Length = 2223

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 90/279 (32%), Gaps = 18/279 (6%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+         +   L      ++   + +   ++  N  D  + ++++LK C    + +
Sbjct: 1625 PELSELKKQYESVSDLFNTKKSVLQDHFSKLLNDQCKNFNDWFSNIKVNLKECFESSETK 1684

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            K      Q + D L    +    +         K    +         +     + +  +
Sbjct: 1685 KSVEQKLQKLSDFLTLEGRNSKIKQVDSVLKHVKKHLPKAHVKELISWLVGQEFELEKME 1744

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                                +E    L  +    ++ + L  +L +   +++ +   E  
Sbjct: 1745 SICQA-------------RAKELEDSLQQLLRLQDDHRNLRKWLTN---QEEKWKGTEEP 1788

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                E     L ++ ++    A L ++  E    +  +   +A  L  R++ L RQ  EI
Sbjct: 1789 GEKTELFCQALARKREQFESVAQLNNSLKEYGFTEEEEIIMEATCLMDRYQTLLRQLSEI 1848

Query: 599  EKQ--IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            E++  +     +   +    +I  + E+   +  + S E
Sbjct: 1849 EEEDKLLPTEDQSFNDLAHDVIHWIKEIKESLMVLNSSE 1887


>gi|83699693|gb|ABC40752.1| myosin heavy chain [Haemonchus contortus]
          Length = 1581

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 85/268 (31%), Gaps = 8/268 (2%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +        +   ES   ++       E ++        E          + K   L+  
Sbjct: 853  KIKELEETIQKGDESRKQLESQVAGLIEEKNALFLSLEKEKANLQDAEERNQKLAALKAD 912

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              + + +   +L +             K      + K  +Q L  S        +     
Sbjct: 913  LDKQLAEVQDRLAEMEDRNSDLGRLKKKMEQEIAEAKKHAQDLELSLKKAESEKQARDHN 972

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
              +L   + N    +    +E           +KL   L     E +    E++  +L +
Sbjct: 973  IRSLQDEMANQDEAVARLNKEKKHQE---EVNRKLMEDL--QAEEDRVNHMEKVRAKLEQ 1027

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   +L   +DR+ R       +      +++   +    + K+   + +  ++ E ++ 
Sbjct: 1028 Q-LDDLEDSMDREKRARQDLEKSKRKVEGELKVAQENIDEITKQKHDVEQNLKKKEAELH 1086

Query: 604  QVTAKGEAEKT--AILISILHEVHIQIH 629
            Q++ + E E++  A L   + E+  +I 
Sbjct: 1087 QLSTRLEEEQSLVAKLQRQIKELQARIA 1114



 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 406  IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              L    + + + + R      ++ +++Q   +            KK    +  +  + R
Sbjct: 915  KQLAEVQDRLAEMEDRNSDLGRLKKKMEQEIAEAKKHAQDLELSLKKAESEKQARDHNIR 974

Query: 466  LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
             +Q  +     +     +E        +   + ++  ++L       N ++K+ + L   
Sbjct: 975  SLQDEMANQDEAVARLNKEKK------HQEEVNRKLMEDLQAEEDRVNHMEKVRAKLEQQ 1028

Query: 526  FVE-QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
              + +     E+  ++  E+   ++  +L     +    +        ++++   +   L
Sbjct: 1029 LDDLEDSMDREKRARQDLEKSKRKVEGELKVAQENIDEITKQKHDVEQNLKKKEAELHQL 1088

Query: 585  YKRFRL-------LSRQKEEIEKQI----------AQVTAKGEAEKTAILISILHEVHIQ 627
              R          L RQ +E++ +I           Q  AK +  ++  L   L E+  +
Sbjct: 1089 STRLEEEQSLVAKLQRQIKELQARIAELEEELENERQSRAKADRSRS-ELQRELEEISER 1147

Query: 628  IHQ 630
            + +
Sbjct: 1148 LEE 1150



 Score = 37.2 bits (84), Expect = 8.7,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 78/239 (32%), Gaps = 10/239 (4%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
             +   R        A+L+  +K     I + +      +  R +  +   +   E     
Sbjct: 1086 HQLSTRLEEEQSLVAKLQRQIKELQARIAELEEELENERQSRAKADRSRSELQRELEEIS 1145

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR--EAALLLTLINHPAILQEQYQEL 505
               ++       +  + +  ++ L K +  ++ S    E AL      H   + E   +L
Sbjct: 1146 ERLEEQGGATAAQLEANKKREAELAKLRRDQEESNLNHETALASLRKKHHDAVAELTDQL 1205

Query: 506  ADIRY----DNNELQKLWSFLFSDFV--EQKYFLPEEIHQRLC--ERGFGELLKQLDRQV 557
              ++      + E  +L   L       + +    ++I ++L   E  + E   + D Q 
Sbjct: 1206 EQLQKLKVKADKEKAQLQRELEEVSASVDSEVRTRQDIEKQLKVVEVQYAEAQTKADEQS 1265

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
            R    ++A       +     +Q   +  +   L R K ++  Q+ +     + E    
Sbjct: 1266 RQLNDFAALKNRLHNENSDLGRQLEDMENQLNSLHRLKSQLTSQLEETKRSYDEEARER 1324



 Score = 37.2 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 96/334 (28%), Gaps = 25/334 (7%)

Query: 320  CFDGDDPG-LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD-SFIRCYGKTAFEKLIVE 377
              D +            + V            V     ED      R          + +
Sbjct: 968  ARDHNIRSLQDEMANQDEAVARLNKEKKHQEEVNRKLMEDLQAEEDRVNHMEKVRAKLEQ 1027

Query: 378  SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
             L  ++    RE +    +    + ++E  LK    +I +   + +  +    + +    
Sbjct: 1028 QLDDLEDSMDRE-KRARQDLEKSKRKVEGELKVAQENIDEITKQKHDVEQNLKKKEAELH 1086

Query: 438  KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
            +  T          K  R   +       ++  L   + S+  + R  + L   +    I
Sbjct: 1087 QLSTRLEEEQSLVAKLQRQIKELQARIAELEEELENERQSRAKADRSRSELQRELE--EI 1144

Query: 498  LQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCE------RGFGEL 549
             +   ++           +K  + L       E+     E     L +          + 
Sbjct: 1145 SERLEEQGGATAAQLEANKKREAELAKLRRDQEESNLNHETALASLRKKHHDAVAELTDQ 1204

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            L+QL +    A    A  +  + +V       +   +    + +Q + +E Q A+   K 
Sbjct: 1205 LEQLQKLKVKADKEKAQLQRELEEVSASVDSEVRTRQ---DIEKQLKVVEVQYAEAQTKA 1261

Query: 610  EAEKTA---------ILISILHEVHIQIHQIESQ 634
            + +             L +   ++  Q+  +E+Q
Sbjct: 1262 DEQSRQLNDFAALKNRLHNENSDLGRQLEDMENQ 1295


>gi|168273048|dbj|BAG10363.1| Rho-associated protein kinase 2 [synthetic construct]
          Length = 1388

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 822  MSEKQLKQENNHLMEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 881

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 882  ELKEECEEKTKLGKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 941

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 942  EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 993

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 994  NKLKD--VQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1051

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1052 NDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1096


>gi|4520225|dbj|BAA75636.1| Rho kinase [Homo sapiens]
          Length = 1388

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 822  MSEKQLKQENNHLMEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 881

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 882  ELKEECEEKTKLGKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 941

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 942  EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 993

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 994  NKLKD--VQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1051

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1052 NDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1096


>gi|325971286|ref|YP_004247477.1| DNA mismatch repair protein MutS [Spirochaeta sp. Buddy]
 gi|324026524|gb|ADY13283.1| DNA mismatch repair protein MutS domain protein [Spirochaeta sp.
           Buddy]
          Length = 782

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 54/141 (38%), Gaps = 11/141 (7%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
           A + ++ N     +  +     E        +  +L E+      + L  +    G    
Sbjct: 464 ASMEFNENSHLPTFRIIQGLPGESHALDTARLM-KLPEQVLAMAEQYLGSEAVQIGSIIK 522

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEI---EKQIAQVTAKGEAEKTAILISILH 622
             EA     R+  ++  A++KR+  L  + +++   E ++ Q  A+ + E+T  L   + 
Sbjct: 523 DLEAKR---RELEREETAMHKRYLSLQSEVKDLQLKELRVKQREAQLKQEQTTELARFMQ 579

Query: 623 EVHIQIH----QIESQEAMIE 639
           +   ++     ++ + E   E
Sbjct: 580 KKRKELENLVAELRNGEITKE 600


>gi|297668194|ref|XP_002812333.1| PREDICTED: rho-associated protein kinase 2-like [Pongo abelii]
          Length = 1388

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 822  MSEKQLKQENNHLMEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 881

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 882  ELKEECEEKTKLGKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 941

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 942  EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 993

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 994  NKLKD--VQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1051

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1052 NDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1096


>gi|297265441|ref|XP_001096931.2| PREDICTED: rho-associated protein kinase 2 [Macaca mulatta]
          Length = 1388

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 822  MSEKQLKQENNHLMEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 881

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 882  ELKEECEEKTKLGKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 941

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 942  EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 993

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 994  NKLKD--VQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1051

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1052 NDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1096


>gi|182416750|ref|ZP_02948147.1| replicative DNA helicase [Clostridium butyricum 5521]
 gi|237669628|ref|ZP_04529606.1| replicative DNA helicase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379407|gb|EDT76902.1| replicative DNA helicase [Clostridium butyricum 5521]
 gi|237654862|gb|EEP52424.1| replicative DNA helicase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 446

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 6/74 (8%), Positives = 25/74 (33%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +   +    E +++ ++I     + +  + L +  +  +  + ++  +   F        
Sbjct: 7   RSLPQSIEAEQSVIGSMIIDKNTIAKVLESLNEEDFYRDGHKVIYKAILEMFRNDMAVDL 66

Query: 535 EEIHQRLCERGFGE 548
             + + L      E
Sbjct: 67  VTLLEYLKSTEMLE 80


>gi|118346293|ref|XP_977019.1| hypothetical protein TTHERM_00035190 [Tetrahymena thermophila]
 gi|89288392|gb|EAR86380.1| hypothetical protein TTHERM_00035190 [Tetrahymena thermophila SB210]
          Length = 1813

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 100/308 (32%), Gaps = 24/308 (7%)

Query: 324  DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
            +       +K I++        N     L    +D             +  ++E+   V+
Sbjct: 1041 EIKTTNDNHKYIEMRTKWQDEKNLHLENLNKFKKDIKQI--QDINDQLQAQLIEAQRQVN 1098

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
             L  +  + ++ ++ +    L    +   ++  DQ  +      ++  L Q   K I E 
Sbjct: 1099 ELQNQLVQQKNSHSEEMAKLLSEKQQQSTHNQVDQNEQEEIINQMQRELLQ-KNKLIEEL 1157

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
                    +  + +      +        +  +       E  +    +     + +  +
Sbjct: 1158 QFDSEKQIREEKAKVAAITVKVQQLEQANQEIIVPDNKQSEFEISKLKLQ----VDQHQE 1213

Query: 504  ELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
            +L   I+ +  + + L++       E+K               F E    L+ Q+  A +
Sbjct: 1214 DLKKQIKLNQEQNELLFNIHKELSQEKKNLD-----------EFREKNNILNDQIIQATI 1262

Query: 563  WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
                 E     + +   Q   L ++   L++Q ++++  + Q   + + +    +   L 
Sbjct: 1263 QITKQENEQQSLNKQIHQ---LQEQKNNLTQQIQDLQDNLEQA-KQPDKQLLDQI-EELQ 1317

Query: 623  EVHIQIHQ 630
            +++ Q+H 
Sbjct: 1318 QINTQLHA 1325


>gi|118399356|ref|XP_001032003.1| hypothetical protein TTHERM_00703320 [Tetrahymena thermophila]
 gi|89286340|gb|EAR84340.1| hypothetical protein TTHERM_00703320 [Tetrahymena thermophila SB210]
          Length = 3324

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 97/283 (34%), Gaps = 16/283 (5%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   +     A EK   + +   +   K+  + +         +L+        H K QK
Sbjct: 1731 EKTRQLKEIEALEKQKNQRIIEEEERLKQLRDMQEMVRQQIEDDLQRKKLEDEEHRKRQK 1790

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
              +   Q I DRLQ    K         R   +   ++  +    ++ +    K +   +
Sbjct: 1791 ALFDKEQEILDRLQDEQVKLSQLQQEQARLQAQELENKKVRDMQLKMEEELRKKEEEKLE 1850

Query: 480  PSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                ++A L   I +     E+ + ++  ++    E Q+    +  +   QK        
Sbjct: 1851 QLKIQSASLNEEIKNNQSRSEEERVKMHQLQLKYAEDQRKQQEILDELNSQKLLKENSQR 1910

Query: 539  QRLCERGFGELLKQ-------LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
            Q+   +    L +Q          Q     +     E  I+  ++  +  +   +R  +L
Sbjct: 1911 QQDIIQQQDILEQQKQINEQQYALQQEQLRIQREREELEILQKQRNEESFINEQQRLAIL 1970

Query: 592  SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              +++E+E+QI Q             ++   E+  Q  Q+ESQ
Sbjct: 1971 QSKEQELEQQIRQQNQSF--------LAQQEELQRQKQQLESQ 2005



 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 76/199 (38%), Gaps = 16/199 (8%)

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAILQEQYQELA 506
             ++          ++  +  +    K  K+  +++  L   L    NH  + Q+Q +E+ 
Sbjct: 1624 QRRKQEEELAATAAKTALDVTAAAEKARKEYEIQQQHLQNQLALTQNHTLLTQQQQKEIQ 1683

Query: 507  DIRYDNNEL-------QKLWSFLFSDFVEQKYFLPE--EIHQRLCERGFGELLKQLDRQV 557
            +++    E        QK  +       +Q+  + +  E  ++  E      LK+++   
Sbjct: 1684 ELKKQQEEFIKQQLEIQKQQAEYLEKLQKQQALIIQQGEEQRKRHEEEKTRQLKEIEALE 1743

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
            +         E  +  +R    Q +   +    L R+K E E+   +  A  + E    +
Sbjct: 1744 KQKNQRIIEEEERLKQLRDM--QEMVRQQIEDDLQRKKLEDEEHRKRQKALFDKE--QEI 1799

Query: 618  ISILHEVHIQIHQIESQEA 636
            +  L +  +++ Q++ ++A
Sbjct: 1800 LDRLQDEQVKLSQLQQEQA 1818



 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 86/237 (36%), Gaps = 17/237 (7%)

Query: 406  IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
               ++    +K  +L+  Y++  R + + L +    +        +++   +      Q+
Sbjct: 1866 NQSRSEEERVKMHQLQLKYAEDQRKQQEILDELNSQKLLKENSQRQQDIIQQQDILEQQK 1925

Query: 466  LMQSSLVKGKLSKKPSLREAALLLTLI--NHPAILQEQYQELADIRYDNNEL-QKLWSFL 522
             +       +  +    RE   L  L    +      + Q LA ++    EL Q++    
Sbjct: 1926 QINEQQYALQQEQLRIQREREELEILQKQRNEESFINEQQRLAILQSKEQELEQQIRQQN 1985

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             S   +Q+    ++  Q+L  +    +L+Q              ++ +   ++   +   
Sbjct: 1986 QSFLAQQEELQRQK--QQLESQKLDLILEQ--------DRLKKKSDLDDAKLKDVEK--- 2032

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L ++   +  +K++  ++  ++ A+   E        L     QI + + Q+ +IE
Sbjct: 2033 NLQEQLSKIENEKDQQIQRDQEIQARVRQESINAQQEELQRQKQQI-EFQKQDLIIE 2088


>gi|92091583|ref|NP_001035202.1| myosin-11 isoform SM2B [Homo sapiens]
 gi|46486994|gb|AAS98911.1| smooth muscle myosin heavy chain isoform SM2 [Homo sapiens]
 gi|219521495|gb|AAI43365.1| Myosin, heavy chain 11, smooth muscle [Homo sapiens]
 gi|270048018|gb|ACZ58374.1| myosin, heavy chain 11, smooth muscle isoform 2 [Homo sapiens]
          Length = 1945

 Score = 43.7 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 94/265 (35%), Gaps = 10/265 (3%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     +     E E        ++ ELE  L      +++++ R    QA R ++ Q  
Sbjct: 900  QEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQM 959

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                 +        +K    +       + ++  ++          +E  LL   I+   
Sbjct: 960  LDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKLSKERKLLEERISDLT 1019

Query: 497  I-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEIHQRLCER--GFGELLK 551
              L E+ ++  ++    N+ + + S L       E+     E++ ++L      F E + 
Sbjct: 1020 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIA 1079

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
             L  Q+ +  +  A  E  +          +A   +     ++  E+E  I+ +    ++
Sbjct: 1080 DLQAQIAELKMQLAKKEEELQAALARLDDEIA---QKNNALKKIRELEGHISDLQEDLDS 1136

Query: 612  EKTAILISILH--EVHIQIHQIESQ 634
            E+ A   +     ++  ++  ++++
Sbjct: 1137 ERAARNKAEKQKRDLGEELEALKTE 1161


>gi|324508575|gb|ADY43619.1| Coiled-coil domain-containing protein 22 [Ascaris suum]
          Length = 563

 Score = 43.7 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 83/222 (37%), Gaps = 15/222 (6%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +   +R++ L  ++I+  S      ++     D  G  + L + +    +L+      
Sbjct: 342 YIEESEERMESLQNRWISVKSEKDDELRRARNEYDSLGQEKELQRETAEMLRLADAIESE 401

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNEL-QKLWSFLFSDFVEQKYFLPEEIHQRLC 542
               L     H + L+ + + +  ++ + N   ++++  + +   +Q+         R  
Sbjct: 402 ----LYLKHEHLSKLKREVERMEQVQLNRNAYTRRIFEIVANIRKQQEDIDKVLSENRHI 457

Query: 543 ERGFGELLKQLDRQ---VRDAGLWSATTEANIVDVRQGYQQA-------LALYKRFRLLS 592
           ++    L+ +LDR    V +        + ++    +   +        ++  +    ++
Sbjct: 458 QKELKSLVGKLDRTFTVVEEKLYRDMQRDTSMQKAYRLLVKIHEECSWVVSATEACGRIN 517

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ +E+  QIA    K   E    +++   EV  +   + + 
Sbjct: 518 REIDELNDQIAIQQQKRLDETLEKVLNDWMEVKQENDALMNT 559


>gi|289622049|emb|CBI51227.1| unnamed protein product [Sordaria macrospora]
          Length = 1468

 Score = 43.7 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 50/126 (39%), Gaps = 11/126 (8%)

Query: 525  DFVEQKYFLPEEIHQRL-----CERGFGELLKQLDRQVRDAGLWSATT---EANIVDVRQ 576
             +V+    + +++ ++L           E + +L+ +V      S T    EA    ++ 
Sbjct: 1202 HYVKGTEKMLKQLKEQLTRYKTENSRLKEQVVELEDKVGGENGDSGTPADWEAERASLQG 1261

Query: 577  GYQQALALYKR-FRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIES 633
               +  A  +R    L +Q + + +++  V  + ++    +      L      + +++ 
Sbjct: 1262 QVSELQAELQRTASQLDQQLKSLREELQDVRRERDSAAHSSEDASRRLEATKKDLEELQH 1321

Query: 634  QEAMIE 639
            + A++E
Sbjct: 1322 ENALLE 1327


>gi|242083630|ref|XP_002442240.1| hypothetical protein SORBIDRAFT_08g016780 [Sorghum bicolor]
 gi|241942933|gb|EES16078.1| hypothetical protein SORBIDRAFT_08g016780 [Sorghum bicolor]
          Length = 644

 Score = 43.7 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 70/172 (40%), Gaps = 22/172 (12%)

Query: 491 LINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPE-------------- 535
           ++     L+   +E+ A+     ++ Q+L S + +   E   F  E              
Sbjct: 271 VMKEMENLKRTIEEIQANKDLVESQNQELQSKILAAEQEHSVFEAEVKSLKMELGAVEEA 330

Query: 536 -EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            E+  +  +    E+LK+L+   R    +    +    +  +   + L   ++  +   +
Sbjct: 331 KEVLAKEFDAEKAEILKELEDLKRKVEEFQVNKDLLEGENDKLRLEVLTAEQKQSMSEVE 390

Query: 595 KEEIEKQI------AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            + ++K++       +  AK    + A L+  + ++  ++ +I++++ ++EG
Sbjct: 391 VKSLKKELGALVETKEAAAKAFDAEKAKLMKEVEDLKRKVEEIQTKKDLVEG 442



 Score = 37.2 bits (84), Expect = 8.1,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 69/199 (34%), Gaps = 15/199 (7%)

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
           R W+   +         +L +       +S      E +L      +  +          
Sbjct: 31  RVWELEHKITQLISEKGKLEKQLEKTKAISSHKEEVERSLKA---ENDKLWSVVSIAEEK 87

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
                 E+++L   L +    ++    E      C     +++ + +   R      A  
Sbjct: 88  CNKSEAEVERLKEELCALAEAKEAADNE------CNHEITKIILESEDLRRRLEEIQAIK 141

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE------AEKTAILISIL 621
           E    +  +   +AL   ++ ++   + E ++ +++ +    E       E+ A +   L
Sbjct: 142 ELAESENHKLRSEALIAEEKQKISETEIERLKVELSGLAEAKEAATKAFDEQNAEITEEL 201

Query: 622 HEVHIQIHQIESQEAMIEG 640
            E+  ++ +I++ + ++EG
Sbjct: 202 EELKRKLKEIQTNKDLVEG 220


>gi|194901202|ref|XP_001980141.1| GG20180 [Drosophila erecta]
 gi|190651844|gb|EDV49099.1| GG20180 [Drosophila erecta]
          Length = 2223

 Score = 43.7 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 83/248 (33%), Gaps = 40/248 (16%)

Query: 402  AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
             ++   + +    I++Q  R    +  + +     Q          +  ++  R +D   
Sbjct: 1629 QKMTNEMNDLRMLIEEQNARNNLLEKKQRKFDAECQSLQDAARQERQAKERYGREKDVLQ 1688

Query: 462  PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY---DNNELQKL 518
              +  ++ +L   +L     L+E  L               +EL ++ +      E  +L
Sbjct: 1689 AEKFTLEQTLADTRLD--LDLKEEKLASL-----------QRELEEMTFGGGTEEEFAQL 1735

Query: 519  WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                       +     E   +  E    E+  Q+    +       T E    + R+  
Sbjct: 1736 R----------RSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRES 1785

Query: 579  QQALALYKRFR-LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE----- 632
            QQ     +  R    ++ + +E Q+     + E E+  +L+   HE+  ++  +E     
Sbjct: 1786 QQRDEELEEVRGNGYKKIKALECQL-----ETEHEERTLLLREKHELERRLSSMEDRDRV 1840

Query: 633  ---SQEAM 637
               ++EA+
Sbjct: 1841 DRDAEEAL 1848



 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/284 (10%), Positives = 81/284 (28%), Gaps = 21/284 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE--IHLKNCINHIKDQ 418
              +R   +   ++   E   +    +K+          +                 +   
Sbjct: 1775 ETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSM 1834

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            + R    +   + L Q  ++ + ++    +  +          P + L++   ++ +L  
Sbjct: 1835 EDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIR--QLRNQLED 1892

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              S R  A+           Q    EL +++    E  +  +    +     +    E+ 
Sbjct: 1893 AESARSLAM--------KARQTAEAELTEVQAMFEESHRARND-AEERANAAHRDRAELQ 1943

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             ++ E                  L +     +  + +    +A         L  Q  E+
Sbjct: 1944 AQIEENEEELGELMKKYSATVKHLNTEQINVSEAEFKLNEMEAERNN-----LKEQVAEL 1998

Query: 599  EKQIAQVTAKGEAEKTA---ILISILHEVHIQIHQIESQEAMIE 639
            + ++  V   G+         L     E+  ++   ++  A +E
Sbjct: 1999 QHRLDNVENLGDPSMAMMSKRLELRTKELESRLELEQATRARLE 2042


>gi|149638340|ref|XP_001515341.1| PREDICTED: similar to Cxorf5 (71-7A) protein [Ornithorhynchus
           anatinus]
          Length = 1086

 Score = 43.7 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 87/269 (32%), Gaps = 7/269 (2%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     A E        L D+   R  E       +     +   +     + D   R  
Sbjct: 275 KHQEIEAKEVYAQRQDLLKDIEIVRGREAELKQRIEAFELAQRLQEEKNKSVDDALRRRE 334

Query: 424 Y-SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              + I D  +Q  +  + ++    +       +R  +   +   ++  +  +     S 
Sbjct: 335 LSVKNIEDTYEQKLKNELLKYQLELKEEYTIRSNRITEEERKNKERAMHLHEETLAFNSK 394

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           +E   L   I H + L+ +   +        +   L +    +  +      E++  ++ 
Sbjct: 395 KED--LRQAIAHASELKLELDSVKAQVLVLTKQNHLLTEKLRETTDYPLLKEEKLEFQMQ 452

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +   + L+++  +            A  V ++   ++A    K    L +++ E  KQ+
Sbjct: 453 NKLLKQQLEEIRNENLHLQNRLTQPSAEHVALQAELKRAENARK----LEQKEFETRKQV 508

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQI 631
            +   + E E  A L   L +    + +I
Sbjct: 509 LEKQLQNEVEHCAQLKIQLLDSETSLRRI 537


>gi|254302052|ref|ZP_04969410.1| replicative DNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322244|gb|EDK87494.1| replicative DNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 446

 Score = 43.7 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 58/171 (33%), Gaps = 15/171 (8%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K        E AL+  +  +  +  E    +    +   E   ++S +   + E K    
Sbjct: 7   KKIPHSLEAERALIGGIFYNQDLFDEIRDIVNAEDFYKVEHSSIYSAIEKVYSENKGIDG 66

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I + + +       +++ + + D      ++   +        +  A+ +R   +  +
Sbjct: 67  ILIEEEIKKSNSKNK-EEILKILSDILDEITSSYNLLEYAN--LIKEKAMLRRLGNVGAE 123

Query: 595 KEEI--------EKQIAQVTAKGEAEKTAILISILHEVH----IQIHQIES 633
             ++        E+ I +  AK       IL + + ++      +I ++E 
Sbjct: 124 ITQLAYNDVRVAEEIIDEAEAKVLNLSKNILKNSIVDMKTAGVAEIMRMER 174


>gi|126303086|ref|XP_001376890.1| PREDICTED: similar to Laminin subunit alpha-5 [Monodelphis domestica]
          Length = 3737

 Score = 43.7 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 66/234 (28%), Gaps = 23/234 (9%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            R RL +L ++             K           +    +      L       E AL 
Sbjct: 2239 RQRLDELERQSGVLDEETEVLHSKEGSQARAGQLPENSRDNLQRAKALLPNIPNMERALG 2298

Query: 489  LTLINHPAILQEQYQELADIRY--DNNELQKLWSFLF-------SDFVEQKYFLPEEIHQ 539
              +     +        +   +     E++++   +            E +    + +  
Sbjct: 2299 ELISQMDRLSPSNASAASGEEFLRTLGEVERMLQEMRGRDFGGPRAVAEGELREAQSLLN 2358

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ----K 595
            R+  +      ++            A   + ++D+R    +A+   +    L+ +     
Sbjct: 2359 RVQSQ-LTSRWEESQALASSIRERLAQHNSQLMDLRDALNEAVNKTRLTEELNSRNQGYL 2417

Query: 596  EEIEKQIAQVTAKGE---------AEKTAILISILHEVHIQIHQIESQEAMIEG 640
            EE  ++  ++  +            +  A +  +L  +     + E   A ++G
Sbjct: 2418 EERLQKKQELERENSTLRDILRMAEDALAQVSELLQTMDRAKEEYEHLAANLDG 2471


>gi|70733873|ref|YP_257513.1| M24/M37 family peptidase [Pseudomonas fluorescens Pf-5]
 gi|68348172|gb|AAY95778.1| peptidase, M23/M37 family [Pseudomonas fluorescens Pf-5]
          Length = 428

 Score = 43.7 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 72/209 (34%), Gaps = 11/209 (5%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            +L++  +    E        ++    + +K  S R  Q  L+  +            L 
Sbjct: 65  GKLEKQVEALQKELKKSESELQRLDEEK-KKLQSARTEQQRLIAIQARAAYQNGRQEYLK 123

Query: 490 TLIN--HPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            L+N  +P         Y  L+  R    +L+     L      +K    ++    + + 
Sbjct: 124 LLLNQQNPEKFARTLTYYDYLSQARL--EQLKSFNETLRQLANVEKDISLQQAQLLVQKS 181

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                 ++LD+  ++  L  A    ++       +   A  +    L++  + IE+ +A+
Sbjct: 182 SLDTQREELDKVRKERQLALAKLNNDVKARDDKLK---AREQDQADLAKVLKTIEETLAR 238

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIES 633
              + E  +   LI+       ++ + ++
Sbjct: 239 QAREAEEARQKALIAQQEAEKKRLREAQA 267


>gi|4590326|gb|AAD26530.1|AF083327_1 101 kDa heat shock protein [Zea mays]
          Length = 582

 Score = 43.7 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + I   +              + + +      
Sbjct: 63  AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALE------KEKDKASKARLIE 116

Query: 567 TEANIVDVRQGYQQALALYKRF-------RLLSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
               + D+R   Q     Y++        R L +++EE++  + +   + +  + A L  
Sbjct: 117 VRKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAERRMDLARVADLKY 176

Query: 619 SILHEVHIQIHQIESQ 634
             L E+   I ++ES+
Sbjct: 177 GALQEIDAAISKLESE 192


>gi|71902445|ref|ZP_00684391.1| DnaB-like helicase, N-terminal:DnaB-like helicase, C-terminal
           [Xylella fastidiosa Ann-1]
 gi|71727830|gb|EAO30077.1| DnaB-like helicase, N-terminal:DnaB-like helicase, C-terminal
           [Xylella fastidiosa Ann-1]
          Length = 486

 Score = 43.7 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 50/147 (34%), Gaps = 10/147 (6%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L  L+  P +L +    +    +   + Q ++  +     +++      + +   
Sbjct: 25  AEQAVLGGLMLAPEMLVKIADWITPENFYRRDHQLIYRAILELDSKRQPCDAVTLMEWFH 84

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +G      ++D       L S T  A        Y + +    R     R+  ++  ++
Sbjct: 85  SQGLS---AEVDGGAYLIELASTTPSAA---NIVAYAEIVVDKARL----RELIDVGTRL 134

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIH 629
                K E  +T  LI+       ++ 
Sbjct: 135 QDAGFKPEGRETRDLIAEAEHAIARLA 161


>gi|291399102|ref|XP_002715219.1| PREDICTED: WD repeat domain 65-like [Oryctolagus cuniculus]
          Length = 1249

 Score = 43.7 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 28/316 (8%), Positives = 96/316 (30%), Gaps = 48/316 (15%)

Query: 357  EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            +D                    L  ++    ++         + + + +   +     ++
Sbjct: 755  KDKQDVSHREHIEDLLDKQSRELQDLESSNNQKLLLEYEKYQELQLKSQRMQEEYEKQLR 814

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            D            + L + ++  + E +      +++ R + ++    +         ++
Sbjct: 815  DN---DETKSQALEELTEFYEAKLQEKTTLLEEAQEDVRQQLREFEETKKQIEEDEDREI 871

Query: 477  SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                +  E  L           +++ +    ++ +   ++K +S L    +E++    + 
Sbjct: 872  QDIKTKYEKKL-----------RDEKESNLRLKGETGIMRKKFSSL-QKDIEERTNDIDV 919

Query: 537  IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLS 592
            +     +     ++K L++ ++         +  I D  +         +       +L 
Sbjct: 920  LKG--EQVKLQGVIKSLEKDIQGHKREIQERDETIQDKEKRIYDMKKKNQELEKFKFVLD 977

Query: 593  RQKEEIEKQI--AQVTAKGEAEKTAILISIL-------------------------HEVH 625
             + +E++KQI   +   K   E+   + + L                          E+ 
Sbjct: 978  YKIKELKKQIEPRENEIKVMKEQIQEMEAELEHFHKQNTQLELNITELWQKLRATDQEMR 1037

Query: 626  IQIHQIESQEAMIEGF 641
             +  +    EA+++ F
Sbjct: 1038 RERQKERDLEALVKRF 1053


>gi|260791480|ref|XP_002590757.1| hypothetical protein BRAFLDRAFT_78173 [Branchiostoma floridae]
 gi|229275953|gb|EEN46768.1| hypothetical protein BRAFLDRAFT_78173 [Branchiostoma floridae]
          Length = 2388

 Score = 43.7 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 64/214 (29%), Gaps = 4/214 (1%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            +      +    +QL           G   K  A     K   ++L       G      
Sbjct: 1956 KKKLEAELAQLKKQLSDFQKQAGDAGGAKKKLEAELSQLK---KQLSDFQKQAGDAGSAK 2012

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
               EA L           ++        +    +L +L   L      +     +    +
Sbjct: 2013 QKLEAELSQLKKQLSDFQKQAGDAGGAKKKLEGDLAELRKQLSEQNRAKAELERQANKLK 2072

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                   +L K+LD          A  +    +V+Q         +    LSR+K ++E 
Sbjct: 2073 GETTAKEKLKKELDDLKNKLKDMQAERDKYQREVKQKEGDIGKCNREKEALSREKGKLEG 2132

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++A++  K +          + E+  ++ ++++ 
Sbjct: 2133 ELARLKQKNDQSAEQQ-RGRVGELEAELAKLKAS 2165



 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 69/234 (29%), Gaps = 27/234 (11%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              R    + +        Q    E        + + + +      ++L  +   K KL  
Sbjct: 1874 IERDKLLKELESLRSSSKQVSTLEVELKNLRGQLSGKDQQISTLQKQLGDAGTAKKKLEG 1933

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            + +  +  L           ++        +    EL +L   L     +       +  
Sbjct: 1934 ELAQLKKQL-------SDFQKQAGDAGGAKKKLEAELAQLKKQLSDFQKQAGDAGGAKKK 1986

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ------------------ 580
                     + L    +Q  DAG      EA +  +++                      
Sbjct: 1987 LEAELSQLKKQLSDFQKQAGDAGSAKQKLEAELSQLKKQLSDFQKQAGDAGGAKKKLEGD 2046

Query: 581  ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               L K+    +R K E+E+Q  ++  KGE      L   L ++  ++  ++++
Sbjct: 2047 LAELRKQLSEQNRAKAELERQANKL--KGETTAKEKLKKELDDLKNKLKDMQAE 2098


>gi|121708404|ref|XP_001272120.1| DNA repair protein Rad50 [Aspergillus clavatus NRRL 1]
 gi|119400268|gb|EAW10694.1| DNA repair protein Rad50 [Aspergillus clavatus NRRL 1]
          Length = 1382

 Score = 43.7 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 17/213 (7%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM----QSSLVKGKLSKKPSLREAA 486
           R     +   ++        K  A  R  +   + +     +S  +K  L+K  + RE A
Sbjct: 791 RYDSEIKTIRSQIQDLSAKQKDTAAARTLEDIQEEIAGIGEKSRTLKKSLAKLSNDREQA 850

Query: 487 LLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
              T +N+  + L++   +L + ++       L S +  ++        E I +   +R 
Sbjct: 851 --RTEMNNLELQLRDARSKLDNTKFQLERKADLLSRI-EEYKNLNNQQREAIEKA--DRD 905

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             EL  +L +        +   E    +++QG  Q            RQ +   ++I   
Sbjct: 906 IEELTPELLKYQAQYDDITQRVEGRERELQQGINQLSENI-------RQLDVATEEIDSY 958

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
             +G   +       L  +  +I Q+E+++  I
Sbjct: 959 NERGGPSQLERSRRELQTIENEISQLEAEQGNI 991



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 102/276 (36%), Gaps = 17/276 (6%)

Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438
              +D L +   E    +   +    +   +      +++  +  Y   I+DR++Q  Q+
Sbjct: 277 QSTIDNLKRHLVELDDPDEWLQSNLEQFESRQLQYQQQEEAQKENYM-EIKDRIEQTRQR 335

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-EAALLLTLINHPAI 497
              + + YG+Y    A    Q    QR+ +       +    S++ +A +   +     +
Sbjct: 336 LGVKQAEYGKYENDKANFERQVERRQRMTREIARSHNIRGFDSIQDQADIDDFMRKIRKL 395

Query: 498 LQEQYQELADIRY-DNNELQKLWSFLFSDFVE----QKYFLPEEIHQRLCERGFGELLKQ 552
           L+EQ Q L  ++     EL+++ S L          Q+     +      +R       +
Sbjct: 396 LKEQNQALDRVKREAQTELREVQSTLNEIGQRKSALQESKNAAKRQIASNDREAANYQGK 455

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG--- 609
           L+    D G+ +A  EANI D+     +A     R     ++ +++  +I  +  +    
Sbjct: 456 LNEIDVDEGVQAAL-EANIEDISSRLTEA-KDRARSASWDKEIQDLNLEIQNLEDESSRL 513

Query: 610 EAEKTAIL-----ISILHEVHIQIHQIESQEAMIEG 640
            AE           + L  +  ++ + E     ++G
Sbjct: 514 NAELIEATKRAGDFARLDHLKRELKERERSLETMKG 549


>gi|94265726|ref|ZP_01289463.1| AAA ATPase, central region:Clp, N terminal [delta proteobacterium
           MLMS-1]
 gi|93453739|gb|EAT04115.1| AAA ATPase, central region:Clp, N terminal [delta proteobacterium
           MLMS-1]
          Length = 867

 Score = 43.7 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    +L   + S   E      ++I   +                + +    A 
Sbjct: 392 AIDLIDEAASRLRIEIDSMPTEIDEIERKKIMLEIEREALK------KESDKSSRERLAK 445

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH- 625
            EA + D  +        +   + + +Q  EI+ +I +   + +  +    +S + E+  
Sbjct: 446 LEAELADCNETLNAMKGHWNLEKEVIQQLREIKAKIDEARIEAQQAERQGDLSKVAEIRY 505

Query: 626 IQIHQIESQEAM 637
            +I ++E + A 
Sbjct: 506 GRIVELEKELAA 517


>gi|307708751|ref|ZP_07645213.1| ABC transporter, drug resistance ATPase-1 [Streptococcus mitis NCTC
           12261]
 gi|307615117|gb|EFN94328.1| ABC transporter, drug resistance ATPase-1 [Streptococcus mitis NCTC
           12261]
          Length = 633

 Score = 43.7 bits (101), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 59/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+++  +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KAEVEMIQT-EEISTTNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|297528618|ref|YP_003669893.1| DnaB domain protein helicase [Geobacillus sp. C56-T3]
 gi|297251870|gb|ADI25316.1| DnaB domain protein helicase domain protein [Geobacillus sp.
           C56-T3]
          Length = 416

 Score = 43.7 bits (101), Expect = 0.094,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 42/131 (32%), Gaps = 15/131 (11%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L T +  P +L+E    L +  + + + +KL++ +     +        +     
Sbjct: 5   AEKAVLGTFLECPYLLKETV--LTETHFSDPKHRKLFAAMKRIAQQGDEPDIVTLSTTED 62

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL------SRQKE 596
              FG L            + +   E                 ++ R+L      +   +
Sbjct: 63  VADFGGL-------SYLNEVSAFANETKFDQYEALVLDEWKEREKRRILVVAAQENWDID 115

Query: 597 EIEKQIAQVTA 607
           +I   + ++  
Sbjct: 116 KITTALTRLNE 126


>gi|195564445|ref|XP_002105829.1| GD16472 [Drosophila simulans]
 gi|194203190|gb|EDX16766.1| GD16472 [Drosophila simulans]
          Length = 1103

 Score = 43.7 bits (101), Expect = 0.094,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 31/249 (12%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            E   ++T +E       L +    + D +      + + +    LFQ          R 
Sbjct: 407 MEETHYSTNEELQATLQELADLQTQLTDTQTEN---ERLAEEKDVLFQSLC-------RQ 456

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
            +K    R Q    Q L+     +       S RE  LL        +++   +E   + 
Sbjct: 457 TEKLNESRTQISTLQELLLRDTKQPAPEVSASEREQKLL-------DLIKTSQEEREAVL 509

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               EL    + +                 +L  +   E +  LD Q+  A       EA
Sbjct: 510 LKREELGAELAEMKQAREAG----------QLELQRQRERIALLDSQLDAANAERRQGEA 559

Query: 570 NIVDVRQGYQQALALYKRFRLLSR----QKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
                 +   Q      R   L      + EE+E  +++      +E   +       + 
Sbjct: 560 QFSQAMEEISQRAIEISRLSTLLENARSKIEELEADLSRGDKTDLSEVLDVARKEKDALE 619

Query: 626 IQIHQIESQ 634
            ++ +++ Q
Sbjct: 620 ERVAELQDQ 628


>gi|195347408|ref|XP_002040245.1| GM19034 [Drosophila sechellia]
 gi|194121673|gb|EDW43716.1| GM19034 [Drosophila sechellia]
          Length = 1098

 Score = 43.7 bits (101), Expect = 0.094,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 31/249 (12%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            E   ++T +E       L +    + D +      + + +    LFQ          R 
Sbjct: 402 MEETHYSTNEELQATLQELADLQTQLTDTQTEN---ERLAEEKDVLFQSLC-------RQ 451

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
            +K    R Q    Q L+     +       S RE  LL        +++   +E   + 
Sbjct: 452 TEKLNESRTQISTLQELLLRDTKQPAPEVSASEREQKLL-------DLIKTSQEEREAVL 504

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               EL    + +                 +L  +   E +  LD Q+  A       EA
Sbjct: 505 LKREELGAELAEMKQAREAG----------QLELQRQRERIALLDSQLDAANAERRQGEA 554

Query: 570 NIVDVRQGYQQALALYKRFRLLSR----QKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
                 +   Q      R   L      + EE+E  +++      +E   +       + 
Sbjct: 555 QFSQAMEEISQRAIEISRLSTLLENARSKIEELEADLSRGDKTDLSEVLDVARKEKDALE 614

Query: 626 IQIHQIESQ 634
            ++ +++ Q
Sbjct: 615 ERVAELQDQ 623


>gi|167521597|ref|XP_001745137.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776751|gb|EDQ90370.1| predicted protein [Monosiga brevicollis MX1]
          Length = 2346

 Score = 43.7 bits (101), Expect = 0.094,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 88/272 (32%), Gaps = 15/272 (5%)

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
               +L                 + S    ++       +    +   ++ LR      +
Sbjct: 427 DRTAELDAARASATRNNLDYGEASNSVERLEKELNRVRGVLEDTSTENNE-LREE-LDRL 484

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           +  L +L ++   +  G  R   +      ++   +   ++             + +  L
Sbjct: 485 KMMLARLEREQQVKQGGITRAEHERLLMEQRQDLEEEQRRALKDARSQHGAEIKQMSNRL 544

Query: 489 LTL-INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
            TL ++   + +++     D+   N+EL+   + L     +    L +     L +    
Sbjct: 545 KTLEMSEATLARDKDDAQHDLEAANDELRTCQARL-----QAAEALLQTREAELEDE--R 597

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           + +  L    +DA          + +  Q          R      + +E+E +  ++ A
Sbjct: 598 QAVADLREHAKDAEELELLR-RRLRNAEQRLGDQDKEISRLEPFEERSQELEAEHKKMQA 656

Query: 608 KGE---AEKTAILISILHEVHIQIHQIESQEA 636
             +    +K+  L S L E+  ++  +ES+ A
Sbjct: 657 TMDGLIRDKS-KLRSELDELRAKLAALESENA 687


>gi|154281159|ref|XP_001541392.1| anucleate primary sterigmata protein B [Ajellomyces capsulatus NAm1]
 gi|150411571|gb|EDN06959.1| anucleate primary sterigmata protein B [Ajellomyces capsulatus NAm1]
          Length = 1922

 Score = 43.7 bits (101), Expect = 0.094,   Method: Composition-based stats.
 Identities = 21/211 (9%), Positives = 63/211 (29%), Gaps = 6/211 (2%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             +  R     +    +        +   R         R   S   +  L  K       
Sbjct: 945  KLGQRRGDGGRSVAGDSIFERSVSRAQDRSNSHASDGVRSRASDAERESLEIKNGELRDH 1004

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +    + + ++  +  + ++D+   +   Q     +     + +    E  H        
Sbjct: 1005 VSALKLENQSLRTQLDECMSDLEALDRAYQA---DVEQAEEDLQTMQLERDHALQIAEER 1061

Query: 547  GELLKQLDRQV-RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             E L+ L  +   +        +  I + ++   +    ++  + L  +     + I ++
Sbjct: 1062 EEALQDLKAEAQEELDAMGDELDQKIDECQRMEAELANQHENLKALQAEMRSASEGIIRL 1121

Query: 606  T--AKGEAEKTAILISILHEVHIQIHQIESQ 634
               A+   +K   +   L + + ++ Q+E  
Sbjct: 1122 EEDAQSNLQKYKAVQQELDDANRELEQMEKS 1152


>gi|119574312|gb|EAW53927.1| myosin, heavy polypeptide 11, smooth muscle, isoform CRA_c [Homo
            sapiens]
          Length = 1954

 Score = 43.7 bits (101), Expect = 0.094,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 94/265 (35%), Gaps = 10/265 (3%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     +     E E        ++ ELE  L      +++++ R    QA R ++ Q  
Sbjct: 893  QEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQM 952

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                 +        +K    +       + ++  ++          +E  LL   I+   
Sbjct: 953  LDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKLSKERKLLEERISDLT 1012

Query: 497  I-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEIHQRLCER--GFGELLK 551
              L E+ ++  ++    N+ + + S L       E+     E++ ++L      F E + 
Sbjct: 1013 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIA 1072

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
             L  Q+ +  +  A  E  +          +A   +     ++  E+E  I+ +    ++
Sbjct: 1073 DLQAQIAELKMQLAKKEEELQAALARLDDEIA---QKNNALKKIRELEGHISDLQEDLDS 1129

Query: 612  EKTAILISILH--EVHIQIHQIESQ 634
            E+ A   +     ++  ++  ++++
Sbjct: 1130 ERAARNKAEKQKRDLGEELEALKTE 1154


>gi|109119162|ref|XP_001112894.1| PREDICTED: leucine-rich repeat-containing protein 45-like [Macaca
           mulatta]
          Length = 670

 Score = 43.7 bits (101), Expect = 0.094,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 91/280 (32%), Gaps = 9/280 (3%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                   +L+  +      L +R+ +       +        L++     +   L    
Sbjct: 316 EQKAQDLGELLATAEQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQ 375

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS-LVKGKLSKKPSLR 483
            + +  +++   ++             +      Q      + +       + S+   ++
Sbjct: 376 VEELERKVRCQQEQLFQTRQELTSTSAELKMRAIQAEERLDMEKRRCRQSLEDSESLRIK 435

Query: 484 E-AALLLTLINHPAILQEQYQELADIRYD-NNELQKL-WSFLFSDFVEQKYFLPEEIHQR 540
           E   +   L      +QE+ Q L   R     EL ++  + L      ++  +  +    
Sbjct: 436 EVEHMTRHLEESERAMQERVQRLEAARLSLEEELGRVKAAALSERGQAEEELIKAKNQAH 495

Query: 541 LCERG-FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           L ER     L  +L    +               V +   +A  L  +   L R+ EE++
Sbjct: 496 LEERQRLAHLEDKLRLLAQARDEAQGACLQQRQAVAEAQTRASQLGLQVESLRRRLEELQ 555

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +++    +  + E+ A +  +  E+  Q  +++++ A  E
Sbjct: 556 QEL----SLKDQERVAEVSRVRVELQEQNGRLQAELAAQE 591


>gi|49119498|gb|AAH73619.1| Eps15R protein [Xenopus laevis]
          Length = 850

 Score = 43.7 bits (101), Expect = 0.094,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 60/164 (36%), Gaps = 20/164 (12%)

Query: 498 LQEQYQELADIRYD-NNELQKLWSFLFS-----DFVEQKYFLPEEIHQRLCERGFGELLK 551
           +Q+    +    +    EL ++   +         +EQ     EE  ++       EL  
Sbjct: 367 IQDSSSSIGSGEFTGVKELDEISQEIAQLQREKYALEQDIREKEEAIRQ-KSTEVQELQN 425

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-------YKRFRLLSRQKEEIEKQIAQ 604
            LDR+        A  +     + +  QQ   L        ++ +   +    ++ QI  
Sbjct: 426 DLDRETSTLQELEAQKQDAQDRLDEMDQQKAKLKDMLSDVRQKCQEEGQMISSLKIQIQS 485

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             +  +A++       L+    ++++++ +E+ +E     +GR+
Sbjct: 486 QESDVKAQE-----EELNRTKSELNRLQQEESQLEQ-SIQAGRV 523


>gi|242215818|ref|XP_002473721.1| predicted protein [Postia placenta Mad-698-R]
 gi|220727166|gb|EED81094.1| predicted protein [Postia placenta Mad-698-R]
          Length = 783

 Score = 43.7 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 41/134 (30%), Gaps = 10/134 (7%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            E   L   L    V  +       +     +       +L  Q   +  W       + 
Sbjct: 104 KENAVLEKRLTQALVNNEVAESSHRNALQELQEVQANAARLAAQNARSIGWENRLAVALQ 163

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEK-------QIAQVTAKGEAEKT--AILISI-LH 622
           +     Q+     +R +L   +   +++       Q+ ++    + ++     L    L 
Sbjct: 164 EKDDYQQERDIALQRAKLAEARISALKEKCAKSQAQLTRLREDFDMQRLHRQELSQEILQ 223

Query: 623 EVHIQIHQIESQEA 636
           +   ++ Q++  E+
Sbjct: 224 DARQRLAQLQQSES 237


>gi|73960801|ref|XP_863642.1| PREDICTED: similar to CDC42-binding protein kinase alpha isoform B
           isoform 8 [Canis familiaris]
          Length = 1691

 Score = 43.7 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 49/124 (39%), Gaps = 15/124 (12%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQ 579
                        +    L  +   E ++ L +Q+R++       E       ++   ++
Sbjct: 472 LQYSTADGPLTASK---DLEIKTLKEEIENLRKQIRESSHLEQQLEEANSVRRELDDAFR 528

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQ 630
           Q  A  K+ R L +++EE+ K++ Q + + + +   +          +    E++ ++ +
Sbjct: 529 QIKAYEKQIRTLQQEREELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTE 588

Query: 631 IESQ 634
           + +Q
Sbjct: 589 LHTQ 592


>gi|13124875|ref|NP_074035.1| myosin-11 isoform SM2A [Homo sapiens]
 gi|75517817|gb|AAI01678.1| Myosin, heavy chain 11, smooth muscle [Homo sapiens]
 gi|85397409|gb|AAI04907.1| Myosin, heavy chain 11, smooth muscle [Homo sapiens]
 gi|119574311|gb|EAW53926.1| myosin, heavy polypeptide 11, smooth muscle, isoform CRA_b [Homo
            sapiens]
 gi|119574315|gb|EAW53930.1| myosin, heavy polypeptide 11, smooth muscle, isoform CRA_b [Homo
            sapiens]
          Length = 1938

 Score = 43.7 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 94/265 (35%), Gaps = 10/265 (3%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     +     E E        ++ ELE  L      +++++ R    QA R ++ Q  
Sbjct: 893  QEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQM 952

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                 +        +K    +       + ++  ++          +E  LL   I+   
Sbjct: 953  LDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKLSKERKLLEERISDLT 1012

Query: 497  I-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEIHQRLCER--GFGELLK 551
              L E+ ++  ++    N+ + + S L       E+     E++ ++L      F E + 
Sbjct: 1013 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIA 1072

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
             L  Q+ +  +  A  E  +          +A   +     ++  E+E  I+ +    ++
Sbjct: 1073 DLQAQIAELKMQLAKKEEELQAALARLDDEIA---QKNNALKKIRELEGHISDLQEDLDS 1129

Query: 612  EKTAILISILH--EVHIQIHQIESQ 634
            E+ A   +     ++  ++  ++++
Sbjct: 1130 ERAARNKAEKQKRDLGEELEALKTE 1154


>gi|317419472|emb|CBN81509.1| Disks large homolog 5 [Dicentrarchus labrax]
          Length = 1962

 Score = 43.7 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 22/215 (10%), Positives = 71/215 (33%), Gaps = 22/215 (10%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           + LR   + A+ DR      + I E +     +    + + +           +   +  
Sbjct: 451 EALRQELASALMDR-----DRAICEKNELLEKYCHEVKDKAEAQKELSQACKDIETVREE 505

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           +  + +E      +I    +L+E YQ          ++++    +     +Q   + +E+
Sbjct: 506 RDVARKERT--EAIIQRDQLLREYYQARQKQDSATLDMERANKEI-DILRKQYEAISQEL 562

Query: 538 HQRLCERGF------------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            + L E                +++ + +             +  + D+    +      
Sbjct: 563 KEALQEAEVAKCRRDWAFQERDKIVAERESIRTLCDNLRRERDRAVSDLADALRNLDDTR 622

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
           K+    +R+ +E+++++       +  +   L++ 
Sbjct: 623 KQKNDAARELKELKEKME--DQLEKEARFRQLMAH 655


>gi|302774152|ref|XP_002970493.1| hypothetical protein SELMODRAFT_411118 [Selaginella moellendorffii]
 gi|300162009|gb|EFJ28623.1| hypothetical protein SELMODRAFT_411118 [Selaginella moellendorffii]
          Length = 1060

 Score = 43.7 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 73/210 (34%), Gaps = 16/210 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KY+ + +   R +++          +  +++    K +L     + + AL+   +   
Sbjct: 501 YRKYLEKDAALERRFQQVYVPEPAVEDTISILRGLREKYELHHGVKISDNALVEAALLSS 560

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI--------HQRLCERGFG 547
             + +++     I   +    KL     S            I         +   ++   
Sbjct: 561 RYISDRFLPDKAIDLVDEAAAKLKMERTSKPTALDEIDRAIIKLEMERLSLEHDNDKASR 620

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E L++L+ ++          +     ++Q ++   ++  R      + + +  +I Q   
Sbjct: 621 ERLQKLEAELASL-------KEKQKALQQQWEMEKSIMTRINSCKEEIDRVNLEIQQAER 673

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEA 636
             +  + A L   +L  +  Q+ + E + A
Sbjct: 674 DYDLNRAAELKYGVLINLQKQLKETEGELA 703


>gi|297708729|ref|XP_002831109.1| PREDICTED: LOW QUALITY PROTEIN: myosin-9-like [Pongo abelii]
          Length = 1960

 Score = 43.7 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 87/265 (32%), Gaps = 28/265 (10%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EKL ++     +     E E        ++ ELE    +    +++++ R  + QA + 
Sbjct: 880  AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKK 939

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++QQ  Q+   +        +K    +       + ++   +  +       +E  LL  
Sbjct: 940  KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEEQIILEDQNCKLAKEKKLLE- 998

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +                      E    +L 
Sbjct: 999  -----DRIAEFTTNLTEEEEKSKSLAKLKNK--------------------HEAMITDLE 1033

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L R+ +       T      D      Q   L  +   L  Q  + E+++    A+ E
Sbjct: 1034 ERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVE 1093

Query: 611  AEKTAILIS--ILHEVHIQIHQIES 633
             E     ++   + E+  QI +++ 
Sbjct: 1094 EEAAQKNMALKKIRELESQISELQE 1118



 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 70/228 (30%), Gaps = 15/228 (6%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            + ++ +    + +R+   +L  +            K     +D +       ++     K
Sbjct: 1579 QSEEKKKQLVRQVREMEAELEDERKQRSMAVAARKKLEMDLKDLEAHIDSANKNRDEAIK 1638

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +K   +    +  L         + + LA  + +  +L+ + + +     E       
Sbjct: 1639 QLRKLQAQMKDCMREL---DDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERA 1695

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +   +   EL  ++        L           + Q  ++         L++ + 
Sbjct: 1696 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELINDRL 1752

Query: 596  EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIESQ 634
            ++   QI Q+      E++           L     E+ +++ ++E  
Sbjct: 1753 KKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKVKLQEMEGT 1800


>gi|224023932|ref|ZP_03642298.1| hypothetical protein BACCOPRO_00649 [Bacteroides coprophilus DSM
           18228]
 gi|224017154|gb|EEF75166.1| hypothetical protein BACCOPRO_00649 [Bacteroides coprophilus DSM
           18228]
          Length = 666

 Score = 43.7 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 34/316 (10%), Positives = 96/316 (30%), Gaps = 36/316 (11%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI---NHI 415
           P    + +   A +   +    +     +   EN        + +              +
Sbjct: 149 PQELSQYFLFDAMQSSELLKKNVFAQTIRDNFENVLGFKKYLQLKRAAEKLQQEWAQQRL 208

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           + +K    Y++    +  +L     T  +     +K  A    +   ++   Q +    K
Sbjct: 209 EAEKEAQEYNELCAQK-DKLTADLNTCIAEQDTKYKYLASVEMEYKRAKDGAQEASALNK 267

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
             ++ + +   ++   + +   L+     +    +       L   + +    ++    E
Sbjct: 268 KIQELASKIDDIVKRAVTYAEDLKAFVDNIEIDLFLPKLASNLAQEINNILHIKEQLQKE 327

Query: 536 EI----HQRLCE---------RGFGELLKQLDRQVRDAGLWSATTEANIVD----VRQGY 578
                  + L +         +      + +D +   + + +     N  D    + +  
Sbjct: 328 NTGAYPLETLKDVTNKIITYLKDLSLCSESVDEEQVVSHIVAIQNSTNKEDPFGYLDEAE 387

Query: 579 QQALALYKRFR------LLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHE 623
             AL+   +         L RQ++E+E Q++ +      ++T           LI     
Sbjct: 388 VTALSNLVKRTGSNQFIALDRQRQELEIQLSTLDNLRSQKQTLEQTQAGGNEYLIQNYEA 447

Query: 624 VHIQIHQIESQEAMIE 639
              QI +++ QE  ++
Sbjct: 448 AQKQIEKLKVQEVTLK 463


>gi|167526985|ref|XP_001747825.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|238687342|sp|A9V549|EIF3A_MONBE RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 subunit 10
 gi|163773574|gb|EDQ87212.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1052

 Score = 43.7 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 78/275 (28%), Gaps = 14/275 (5%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY----- 424
             + L  E +        R              +        IN IKD+  R +      
Sbjct: 517 KLQNLQAEMMNGQLTTLSRRLYTAINMIKPAVVQESQMGVKAINRIKDEVAREHVSNLSR 576

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNA-RHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              I  + ++L Q     H    +   +N  + R +   + +  Q  L + KL  +    
Sbjct: 577 RDEIEKQKEELEQSRRRRHQEQMQKHHQNQMQVRQKMAEAVKKNQEELERQKLQLQREEI 636

Query: 484 EAALLLTLINH---PAILQEQYQELADIRYDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E    L  +N     +  Q+  Q L           Q +    +    +      E +  
Sbjct: 637 ERQKALEALNDVSSSSAGQKVVQALNKSDLGTKITAQDIHKMAYEQQKKDARERQERLRA 696

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN----IVDVRQGYQQALALYKRFRLLSRQK 595
                   E  K+L    R     +A +E N            ++A   + +   L    
Sbjct: 697 EEKRLDHMERAKRLREIPRRKEHIAAMSEQNAKWHTELQSARLEKARVDHAKALGLKELL 756

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +           +  AE+    ++ L +   ++ +
Sbjct: 757 KAFAPDKDAYIEEKTAERRKEYMAKLDDFKQRMQE 791


>gi|149636632|ref|XP_001510418.1| PREDICTED: similar to Vesicle docking protein [Ornithorhynchus
           anatinus]
          Length = 1009

 Score = 43.7 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 25/247 (10%)

Query: 413 NHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
             +K    +    +   ++L      +L+ K   +               +     + L 
Sbjct: 604 EKLKQLIEKRLGKENFIEKLGFISKHELYSKAAQKPQPNFSSPDHMIFDHEFTKLVKELE 663

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF---S 524
                    S +   +E  +  TL  H +I+      + +      +L++  S L     
Sbjct: 664 GIITKAIYKSSEEDQKEEEVKKTLEQHDSIVSHYKNMIREQDIQLEDLKQQVSTLKCQNE 723

Query: 525 DFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                      +I Q   +       L +  +     G  +        +  +  ++   
Sbjct: 724 QLQTAVTQQASQIQQHKDQYNLLKVQLGKDHQHHGVPGDGAQVNGLQPEETGRLREEINE 783

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAK---------------GEAEKTAILISILHEVHIQI 628
           L  +  LL  Q EE +  I  + ++               G++E T  L   L  +  Q+
Sbjct: 784 LKSQRELLQGQLEEKDALIESLRSEKTAGKTETSLEAFKAGDSENTTELQRELEALRSQL 843

Query: 629 HQIESQE 635
            +++S E
Sbjct: 844 -KLQSLE 849


>gi|145501820|ref|XP_001436890.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404035|emb|CAK69493.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1015

 Score = 43.7 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 27/260 (10%), Positives = 90/260 (34%), Gaps = 21/260 (8%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
           +     + ++      +E+   +        ++K ++ +   S+   ++L+        +
Sbjct: 399 NNQLIAQIDHLQRELGEEQLNSKAETGKLKQYVKSEREKLEMSKDNVEQLENTVTSLNDK 458

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                R  KK+    ++   + R   ++      +      E   L +   + +++ +  
Sbjct: 459 IKKLDRELKKSNNIINELEMNYRTTNTNAQDANATLGQRDIEIKKLQSA--NKSLIVQIE 516

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
           +++ +    N++L  L   L      Q             ++   EL  ++D+   D   
Sbjct: 517 EQIEE----NDKLSNLKQQLEGKASSQ-------------QQQITELKSKIDKLNEDIER 559

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
                     +  +       L ++   +  + +++  Q+ Q   + E +++    +   
Sbjct: 560 LKGELAKQKQEYDKQNDDLRILQQQKEYVDSELKDLRNQLQQTKEQLEQQQSRGENNEKQ 619

Query: 623 --EVHIQIHQIESQEAMIEG 640
             ++  QI ++E +   ++G
Sbjct: 620 ISQLKTQIIKLEQELKTVQG 639


>gi|145487161|ref|XP_001429586.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124396679|emb|CAK62188.1| unnamed protein product [Paramecium tetraurelia]
          Length = 938

 Score = 43.7 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 28/279 (10%), Positives = 88/279 (31%), Gaps = 18/279 (6%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           +K+  ++   +    +   +         +     +  +    ++  + +      I  +
Sbjct: 143 KKIGAKAPDELLKELENLKKKAQQFDDINKKLNGKNFSDLEKELEKLRQKADKFDEISKQ 202

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
                           +  + +         +   +  +L + K   +   RE   L  L
Sbjct: 203 FSNPSDIQKELDQLKKKAAELDKMKSQLNNQNPDQLLKNLDENKKQLQSKDREIGDLKRL 262

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-----------QKYFLPEEIHQR 540
           ++   + Q Q  +   IR+   ++ +L   +     E           +      ++  R
Sbjct: 263 LS--ELQQNQGSQDDQIRFLQQKIDELEEKVVGLVQELSRYKMLLKSKEDELNKLQMLFR 320

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    ++  +L R   D        +    D+R+         +  + L +Q +++++
Sbjct: 321 DNETRLAQMNNELQRSKNDLQRAQGDLQKAQGDLRKAQTDLSKSQQENQNLKQQTDDLKR 380

Query: 601 QIAQVTAKG-----EAEKTAILISILHEVHIQIHQIESQ 634
           Q  ++  +      + E     +  L E+  Q++ ++ +
Sbjct: 381 QNQELAQENNNLQQDLENQTQNLGQLDEIKDQLNDLQEE 419


>gi|89069732|ref|ZP_01157068.1| hypothetical protein OG2516_09328 [Oceanicola granulosus HTCC2516]
 gi|89044678|gb|EAR50789.1| hypothetical protein OG2516_09328 [Oceanicola granulosus HTCC2516]
          Length = 866

 Score = 43.7 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 72/250 (28%), Gaps = 48/250 (19%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                   +         +T     GR    +A   +   P +R  +         ++  
Sbjct: 363 EALIDDFSEHPWANLPVTVTLEVSDGREQTGSAAPVEMILPGRRFFEPVAKAVIEQRRDL 422

Query: 482 L-------REAALLLTLINHPA--------------ILQEQYQELADIRYDNNELQKLWS 520
           L       R A LL  + + P                +  +   LA    D+ E  ++  
Sbjct: 423 LWSKANAGRVADLLKAVAHRPEDGLFRSETTYLRFRHIIRRLDALAPYGLDDAEQAEIAE 482

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            L+   V+ +     +   RL         ++L+  +R+        E  + ++R+    
Sbjct: 483 ALYDLAVQFEDGTLADARARLERAQ-----RRLEEAMRNGASEEEIAEL-MQELREAVDD 536

Query: 581 ALALYKRFRLLSRQ---------------------KEEIEKQIAQVTAKGEAEKTAILIS 619
              +        +Q                      + +  +I ++  +G   + A L+ 
Sbjct: 537 YTRMLAEQSREQQQGDGTDQPDQQAGDSFEFSQDELQALMDRIQELMEEGRMAEAAELME 596

Query: 620 ILHEVHIQIH 629
            L+++   + 
Sbjct: 597 QLNQLMENMQ 606


>gi|332247306|ref|XP_003272796.1| PREDICTED: rho-associated protein kinase 2 [Nomascus leucogenys]
          Length = 1388

 Score = 43.7 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 822  MSEKQLKQENNHLMEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 881

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 882  ELKEECEEKTKLGKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 941

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 942  EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 993

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 994  NKLKD--VQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1051

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1052 NDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1096


>gi|332242941|ref|XP_003270639.1| PREDICTED: dystrobrevin beta isoform 2 [Nomascus leucogenys]
 gi|332812941|ref|XP_003309013.1| PREDICTED: dystrobrevin beta isoform 1 [Pan troglodytes]
          Length = 609

 Score = 43.7 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +        E AL+ + +             + +   + E + +  +   
Sbjct: 355 PTPTKRLQYSQDIPSHLADEHALIASYVARLQHCARVLDSPSRL---DEEHRLIARYAAR 411

Query: 525 DFVEQKYFL--PEEI-HQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E       P ++       +   +L+ +L+ + R+            E       + 
Sbjct: 412 LAAEAGNVTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEK 471

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 472 AQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEELMKLLKE-EEQKQAAQAT 529


>gi|291393989|ref|XP_002713349.1| PREDICTED: TATA element modulatory factor 1 [Oryctolagus cuniculus]
          Length = 1094

 Score = 43.7 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 4/124 (3%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANI 571
            L   +  L            E     L        EL   L++   +A     T    +
Sbjct: 660 ALDSAYKELTDLHKANAAKDSEAQEAALSREMKAKEELSSALEKIQEEARQQQETLAIQV 719

Query: 572 VDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            D+R   Q+A  A  ++   L  +  E+++++ +   +   E +  + S    +  QI  
Sbjct: 720 GDLRLALQRAEQAAARKEDYLRHEISELQQRLQEAENR-NQELSQSVSSTTRPLLRQIEN 778

Query: 631 IESQ 634
           +++ 
Sbjct: 779 LQAT 782



 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 70/201 (34%), Gaps = 12/201 (5%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
               EH+   +  +++A    Q          S     L++K   REA LL TL    A+
Sbjct: 417 PVNEEHTVLAKVLEQSAAAESQPEALSESEDISKTVEFLNEKLEKREAQLL-TLSKEKAL 475

Query: 498 LQEQYQELADIRYDNNE----LQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFGELLKQ 552
           L+E Y  L D  +   E    +  L         E +K        +   ++    + ++
Sbjct: 476 LEEAYDNLKDEMFRVKEESSSIASLKDEFTQRIAEAEKKVQLACKERDAAKKEIKNMKEE 535

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           L  ++  +       E +   +R   ++   L K+    S   +++     +   K    
Sbjct: 536 LATRLNSSETADLLKEKD-EQIRGLMEEGEKLSKQQLHNSNIIKKL-----RAKDKENEN 589

Query: 613 KTAILISILHEVHIQIHQIES 633
             A L   + E+  ++  ++ 
Sbjct: 590 TIAKLNKKVKELEEELQHLKQ 610


>gi|224062404|ref|XP_002197337.1| PREDICTED: cingulin-like 1 [Taeniopygia guttata]
          Length = 1295

 Score = 43.7 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 84/222 (37%), Gaps = 15/222 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +A++ +L++  ++         +   +  +H+ +    Q  +     +   +K     E
Sbjct: 657 KEALKKQLEENEKELRQNLEELFQVKMEQEKHQTEIRDLQDQLSEMHDELDNAKHTDEGE 716

Query: 485 AALL--LTL-----INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +L    +     +    I ++Q +E+  +R    EL  L   L  +         +++
Sbjct: 717 KEILIEELMQMKQDLQEVLIAKDQQEEI--LRKRERELTALKGALKEEVSSHDT-EMDKL 773

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            ++  ++   +L + L++    A + ++   A          Q   L +  + L R   E
Sbjct: 774 KEQ-HDKELLDLRQSLEKATESAAVLASEKNAAQEKRNSVENQVKELIEENKQLKRTLTE 832

Query: 598 IEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAM 637
           +E++I ++  + +    +   L   L     +  Q+E  EA+
Sbjct: 833 LERKIEELHKQIDNMKGEENSLKEKLETYEKEKQQLE--EAL 872



 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 89/278 (32%), Gaps = 10/278 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             S +  Y +    + +     L +   + E          +   L           +D+ 
Sbjct: 964  QSQLDEYKEKNRREFVDLQRQLKEKNIEVEKSRLMNIRMQDEMRLMEENLRDHQRAQDEA 1023

Query: 420  LRY--YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +       Q ++    +L  K   +     +      +    +        +S +  +  
Sbjct: 1024 ITKTQLLEQTVKSLEYELEAKNHLKDDRARQIKLMEDKLSHLELELDEEKNNSDLLSERI 1083

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +   +   +   L+   +I Q+   +   +   N +L+     L   +   K  L  ++
Sbjct: 1084 NRCREQIEQMRTELLQERSIKQDLECDKISLERQNKDLKSRILHLEGSYRSSKEGLVAQM 1143

Query: 538  HQR---LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLL 591
              R   L ER   E   +++ Q+ +  L     E  +    +      Q   L  R + +
Sbjct: 1144 EARITELEERLANEERDRVNFQLSNRRLERKVKELMLQVDDEHLSLTDQKDQLSLRLKAM 1203

Query: 592  SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             RQ EE E++I ++      +K    +    +++ Q+ 
Sbjct: 1204 KRQVEEAEEEIDRLENA--KKKLQRELEEQLDINEQLQ 1239


>gi|206602167|gb|EDZ38649.1| replication protein A [Leptospirillum sp. Group II '5-way CG']
          Length = 455

 Score = 43.7 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 55/159 (34%), Gaps = 15/159 (9%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           +       +   K   +    E + L ++     ++    + L    +  +  +K++  +
Sbjct: 3   APARAPRPVDILKNLPQNLDAEKSFLGSIFLDNQVIDR--EILTSEDFFLDSHKKIYQAI 60

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGEL------LKQLDRQVRDAGLWSATTEANIVDVRQ 576
              + ++       +  RL ++G+  L      +  L   V  A   +A   A I+  + 
Sbjct: 61  LEMWEDRIPVDSVTLSDRLEKKGWSGLTGGSKYVDDLACIVPTAA--NAKHYARILKEKT 118

Query: 577 GYQQAL--ALYKRFRLLS---RQKEEIEKQIAQVTAKGE 610
             +QA+  A   +   LS        +  +IA+     +
Sbjct: 119 EERQAIFDADRLQKSALSGVPDDIARVRAEIAKREDPDD 157


>gi|190338754|gb|AAI63562.1| Myosin, heavy polypeptide 6, cardiac muscle, alpha [Danio rerio]
 gi|190340241|gb|AAI63567.1| Myosin, heavy polypeptide 6, cardiac muscle, alpha [Danio rerio]
          Length = 1936

 Score = 43.7 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 89/262 (33%), Gaps = 13/262 (4%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K + E +     +E  +   + +  I  ++        S+    R+++  +  + E 
Sbjct: 1566 NQLKADFERKMSEKDEEMEQARRNYQRMIESLQASLEAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPSQRL---MQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                    + A    ++    +         +   L     L+E   +  L     ++Q 
Sbjct: 1626 EIQLSQANRQAADAQKQLKMVQSCLKETQLQMDDTLHSNDDLKEN--ITLLERRNNLMQT 1683

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL-----CERGFGELLKQLDR 555
            + +EL  I      ++KL     +D  E+   L  +    +      E    +L  +L+ 
Sbjct: 1684 ELEELRGILEQTERVRKLAEQELTDATERMQLLHSQNTGLINQKKKQESDLLQLQNELEE 1743

Query: 556  QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             V++        +  I D     ++          L R K+ +E+ I  +  + +  +  
Sbjct: 1744 LVQENRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQV 1803

Query: 616  IL---ISILHEVHIQIHQIESQ 634
             +      L ++  +I ++E++
Sbjct: 1804 AMKGGKKQLQKMEARIRELENE 1825


>gi|126307646|ref|XP_001367284.1| PREDICTED: similar to lamin A/C, isoform 1 [Monodelphis domestica]
          Length = 663

 Score = 43.7 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNAKKEGDLLSAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  +        + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLDGEVHELRGQVAKLEAALSEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + KL+                   +  +  +
Sbjct: 209 NIYSEELRETKRRHETRLVEIDSGKQREFENKLADALQ--------------DLRAQHEE 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             +  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLSAKEAKLRDLEDALARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|145524371|ref|XP_001448013.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415546|emb|CAK80616.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1636

 Score = 43.7 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 95/254 (37%), Gaps = 20/254 (7%)

Query: 386  WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
            ++   E       +     E  ++N  + ++DQ  +  Y+  I+      +   I     
Sbjct: 970  FQAAQEEFYHKLRETEQNYEEEIENLKDDLRDQVQQ--YTNTIQQ-----YDHEIALKQQ 1022

Query: 446  YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
                ++K+ +   ++  S +   ++ ++ +++   + R      +LI    +L  Q   L
Sbjct: 1023 TIEIFEKHIKETKEQLISLQNNNNATLEQQMNSFTTER-----KSLIQKIDVLSSQLNNL 1077

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
                    E   L      D +E +    E+  ++  +    E  +Q++R          
Sbjct: 1078 ------QKEHMALQQK--KDLLENEKTRKEQQFEQSRKEWQEEKKEQVERLEETKLRLQK 1129

Query: 566  TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
              +  +    +  ++   + ++   L ++ E++++QI    ++ + +        L E+ 
Sbjct: 1130 MNDEFLEKKIEYGRETALIQQQNEFLQKKIEDLQRQIDTQQSRFDEKLKQQKNEYLVELE 1189

Query: 626  IQIHQIESQEAMIE 639
             ++ + + ++  IE
Sbjct: 1190 QKLERAQEEKTTIE 1203


>gi|38488753|ref|NP_942118.1| myosin-7 [Danio rerio]
 gi|37720046|gb|AAN71741.1| atrial myosin heavy chain [Danio rerio]
          Length = 1936

 Score = 43.7 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 89/262 (33%), Gaps = 13/262 (4%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K + E +     +E  +   + +  I  ++        S+    R+++  +  + E 
Sbjct: 1566 NQLKADFERKMSEKDEEMEQARRNYQRMIESLQASLEAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPSQRL---MQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                    + A    ++    +         +   L     L+E   +  L     ++Q 
Sbjct: 1626 EIQLSQANRQAADAQKQLKMVQSCLKETQLQMDDTLHSNDDLKEN--ITLLERRNNLMQT 1683

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL-----CERGFGELLKQLDR 555
            + +EL  I      ++KL     +D  E+   L  +    +      E    +L  +L+ 
Sbjct: 1684 ELEELRGILEQTERVRKLAEQELTDATERMQLLHSQNTGLINQKKKQESDLLQLQNELEE 1743

Query: 556  QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             V++        +  I D     ++          L R K+ +E+ I  +  + +  +  
Sbjct: 1744 LVQENRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQV 1803

Query: 616  IL---ISILHEVHIQIHQIESQ 634
             +      L ++  +I ++E++
Sbjct: 1804 AMKGGKKQLQKMEARIRELENE 1825


>gi|157953|gb|AAA28713.1| non-muscle myosin heavy chain [Drosophila melanogaster]
          Length = 1972

 Score = 43.7 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 107/339 (31%), Gaps = 15/339 (4%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D +     AA  +   +   L        +     ED     +       + L       
Sbjct: 1605 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1664

Query: 382  VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                  +  ++          AE+    ++  +  + ++        + + +     K  
Sbjct: 1665 AAKEELQALSKEADGKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1724

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                   R   + A   ++    Q   +  L +        L+   L   L N  +  Q+
Sbjct: 1725 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDRA---AARQLQIEQLTTELANEKSNSQK 1781

Query: 501  QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                 A +   N EL+   + +           +        ++ ++L   G   LL+Q 
Sbjct: 1782 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIAKVEEQLENEGKERLLQQK 1841

Query: 554  DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610
              +  D  +   T         V Q  +Q   L  R +LL R  +E E+++  + T K +
Sbjct: 1842 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1901

Query: 611  AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648
             ++    +    E ++ +I+ ++++     G G  S RL
Sbjct: 1902 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 1940


>gi|320159919|ref|YP_004173143.1| putative M16C family peptidase [Anaerolinea thermophila UNI-1]
 gi|319993772|dbj|BAJ62543.1| putative M16C family peptidase [Anaerolinea thermophila UNI-1]
          Length = 1007

 Score = 43.7 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 39/405 (9%), Positives = 115/405 (28%), Gaps = 22/405 (5%)

Query: 248 LYNF-FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306
            YN     L+ +   +          +   +E   D ++        +  S  +  +   
Sbjct: 152 FYNLVDVYLDAVFNPLLSPYTLKQEGWHYALENPEDEMTFKGVVFNEMKGSYSSPDSLIY 211

Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
            +++ +L P      D      +      +  L +       +   +    D     R  
Sbjct: 212 DQVIRQLFPDTPYGLDSGGDPEKIPNLTYEQFLYYHRTFYHPSNARIFFYGDDAPEKRLQ 271

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI-----KDQKLR 421
              A+ +          +  +                 E         +     +     
Sbjct: 272 MIDAYLQNFEYKQVPSVIPLQARASQPRRVRLPYEVGTEEEAPRHFIALSWMLPEVPDAH 331

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
              + ++ + +           +       ++    +     ++ + S  +KG  S+   
Sbjct: 332 EALTLSLLEHVLIGTPASPLRKALIESGLGEDLTAANLTLDLRQPVFSVGLKGVASENLE 391

Query: 482 LREAALLLTL--INHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             EA +L TL  +    +  +  +  L  + +      +L       +    + + + + 
Sbjct: 392 RVEALILETLQQLADSGVDAETLWASLNTLEF------RLREQNTGSYPRGLFVMLQALA 445

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-----QQALALYKRFRLLSR 593
             L ++   E L + +  +R+        E  + +  +        +   +      L+ 
Sbjct: 446 LWLYDKDPIEAL-RFEAPLRNLRQRLTQGERLLEERIRRLLLENPHRVTVILDPDPALAE 504

Query: 594 QKEEIEK-QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           ++   E+ ++ Q  A    E+   ++    E+  +    +S EA+
Sbjct: 505 RRATAERDRLEQARAAMSPEQLQQVVEETRELKRRQETPDSPEAL 549


>gi|284161186|ref|YP_003399809.1| SMC domain protein [Archaeoglobus profundus DSM 5631]
 gi|284011183|gb|ADB57136.1| SMC domain protein [Archaeoglobus profundus DSM 5631]
          Length = 868

 Score = 43.7 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 82/276 (29%), Gaps = 16/276 (5%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                 +L     PL ++  + E   R+     +  + E +L +    ++ +  R    +
Sbjct: 367 KLERLRELEKTCRPLEEIERELEEVERAKLKLKDVEKDERNLLDMKARLESEIER---LK 423

Query: 427 AIRDRLQQLFQ---------KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              + L+                   +    Y KK    R      +  ++      K  
Sbjct: 424 EALNALKSAKGVCPTCGRLLSEDDRLNLIKSYTKKLENVRKDLIEIENKLEDIKNVKKEL 483

Query: 478 KKPSLREAALL--LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           +     E+ +L    L      L++  +   +      E +KL         +      +
Sbjct: 484 ESVISEESRILREYELAKELENLKKSTKGFEEAEAAWKEYRKLEELALKLSADISVIESD 543

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
              ++       EL  ++D             E+ + ++   Y +   L      L R+ 
Sbjct: 544 LKSEQELNSKLIELNSKIDEVEEKLSNLKKIDESTLKELESYYNEFNRLVSAKHDLERKL 603

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           EE++    +       ++ +  +  L  +  +I  +
Sbjct: 604 EELKSC--ESEIVKAEDELSETLKRLESLKNEIEAL 637



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 34/285 (11%), Positives = 104/285 (36%), Gaps = 17/285 (5%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +          L  + L   D   +   E     +      + +        +KD + 
Sbjct: 84  DCLIVRSSDGNSYLRCDKLLEGDERIREWVERNVAPSHVWLNAIYVRQGEIDEIVKDDER 143

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R    + I     + +++         +++K+     +++  ++  +++ + + K   + 
Sbjct: 144 REKIIKRITQI--EDYERAWENLGKVIKHFKEEKSRLEKEIKAESDVENRIKEVKEELEA 201

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             RE  L   +I     L++  ++LA+   +   ++KL         E++          
Sbjct: 202 KKRE--LDKKMIE----LRDVEEKLAEAEAEKERVEKLREKFEELNREKESIEKHAGKIE 255

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
              RG  E    L +++ +           + ++R   ++ + L + +    + + E+++
Sbjct: 256 ERIRGLRERRNGLKKEIEELKSRVRR----LEEIRGYAEKYIELREEYEKTLKVERELKE 311

Query: 601 QIAQVTAKGE-----AEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +A++ ++                 L+E+  ++ ++E +++ IEG
Sbjct: 312 TLARLESERNGVIRLLSDLENKKKRLNELKGKLEEVEKRKSEIEG 356


>gi|308233789|ref|ZP_07664526.1| DNA repair protein RecN [Atopobium vaginae DSM 15829]
 gi|328943762|ref|ZP_08241227.1| hypothetical protein HMPREF0091_10452 [Atopobium vaginae DSM 15829]
 gi|327491731|gb|EGF23505.1| hypothetical protein HMPREF0091_10452 [Atopobium vaginae DSM 15829]
          Length = 545

 Score = 43.7 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 97/327 (29%), Gaps = 15/327 (4%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL-V 382
           +   +R     + +    +   N  N +++ R  D     R         L   +     
Sbjct: 51  NFASIREGSTDLRVEARLIFDNNTDNDIVIVRTLDTSGRSRITLNDHMVSLAGLAKSAAP 110

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ--AIRDRLQQLFQKYI 440
            +    + E++       +A++     +       Q  R  Y+Q   + ++L +L  +  
Sbjct: 111 SIDICNQHEHQKLLQSHYQAQILNEWASSNILPVQQHYREAYAQYSKLANQLDELTSQTS 170

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT--LINHPAIL 498
                        AR  +         Q      +      L EA       LI+     
Sbjct: 171 EMQEKLDALQFMLARVAELNPQRGEYEQLQQDCARAEHAQDLMEALYTARSELIDEDKAR 230

Query: 499 QEQ---YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLD 554
                  + LA     +  L  L   L +   E +    +EI   L       E+L  + 
Sbjct: 231 DSASTAQEALASACAYDETLAPLADRLAACVAEMEDIS-DEIRHHLDGVECNPEVLNDMQ 289

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +++R+      +    + DV Q    A A             E+++++     +      
Sbjct: 290 QRLRNFQQIMRSYGPRMEDVFQKVDDARAYLAAHDRGDEHIRELKREVQSAHERLVLA-A 348

Query: 615 AILISILH----EVHIQIHQIESQEAM 637
             L +       ++  +++ I +  AM
Sbjct: 349 QELFNAQKRGAPQLAQRMNDILATLAM 375


>gi|259907166|ref|YP_002647522.1| hypothetical protein EpC_04850 [Erwinia pyrifoliae Ep1/96]
 gi|224962788|emb|CAX54243.1| Uncharacterized MscS family protein YjeP [Erwinia pyrifoliae
           Ep1/96]
 gi|283476973|emb|CAY72857.1| putative osmoadaptation receptor [Erwinia pyrifoliae DSM 12163]
          Length = 1111

 Score = 43.7 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 59/164 (35%), Gaps = 20/164 (12%)

Query: 493 NHPAILQEQYQELADIRYDNNELQK------LWSFLF----SDFVEQKYFLPEEIHQRLC 542
           N P + +E  Q++A        L+       L   +         E +    E+   R  
Sbjct: 78  NFPKLSRELRQQIATQTNSRKPLRSSMSAADLEQEILLGSSQLLEESRQVQQEQDRAREI 137

Query: 543 ERGFGEL------LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                +L       ++   ++        +        ++  +QA +  ++ R+   +  
Sbjct: 138 SDSLSQLPQQQTEARRALGEIERRLQGQPSPSTPAGQAQRAQRQAESAAQKARVDELELA 197

Query: 597 EI----EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           ++     +++A++ A+    K A L   L ++  Q++ +  +EA
Sbjct: 198 QLSANNRQELARIRAEVHQRKAAELDGWLQDLRNQLNNLRQREA 241


>gi|168486471|ref|ZP_02710979.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570497|gb|EDT91025.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae CDC1087-00]
          Length = 633

 Score = 43.7 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KATAEM-SQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|148989158|ref|ZP_01820548.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP6-BS73]
 gi|147925381|gb|EDK76459.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP6-BS73]
          Length = 633

 Score = 43.7 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KATAEM-SQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|225543191|ref|NP_742120.2| rootletin isoform 1 [Mus musculus]
 gi|123265693|emb|CAM16757.1| ciliary rootlet coiled-coil, rootletin [Mus musculus]
          Length = 2009

 Score = 43.7 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 67/224 (29%), Gaps = 12/224 (5%)

Query: 420  LRYYYSQAIRDRLQQL------FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             R +  + +    +QL       ++ + E        ++ AR ++     +  +   L  
Sbjct: 829  ERSHLQEQLAQLSRQLSGRDQELEQALRESQRQVEALERAAREKEAMAKERAGLAVKLAA 888

Query: 474  GKLSKKPSLREAALLLTLINHPAI---LQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
             +   +    EA  +   +   A+   L +  ++LA +     +L+     L     E  
Sbjct: 889  AEREGRTLSEEA--IRLRLEKEALESSLFDVQRQLAQLEARREQLEADSQALL-LAKETL 945

Query: 531  YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                  + Q++        L +     +          +         +    L      
Sbjct: 946  TGELAGLRQQVTSTEEKAALDKELMTQKLVQAEREAQASLREQRAAHEEDLQRLQHEKEA 1005

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              R+ +    Q+     +   E  A + +   E+  +I  ++ +
Sbjct: 1006 AWRELQAERAQLQGQLQQEREELLARMEAEKEELSKEIAALQQE 1049



 Score = 37.9 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 67/217 (30%), Gaps = 23/217 (10%)

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
            +    K +          +  A  R+Q+   +  +Q    + + + +    E A L   +
Sbjct: 962  KAALDKELMTQKLVQAEREAQASLREQRAAHEEDLQRLQHEKEAAWRELQAERAQLQGQL 1021

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELL 550
                  QE+ + LA +  +  EL K  + L  +  E       E  Q L   E     L 
Sbjct: 1022 Q-----QEREELLARMEAEKEELSKEIAALQQERDEGLLLAESEKQQALSLKESEKTALS 1076

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L          S   E    D +   +Q          L+ +  ++  Q+ + TA   
Sbjct: 1077 EKLMGTRHSLAAISLEMERQKRDAQSRQEQDRNTL---NALTSELRDLRAQLEEATAAHA 1133

Query: 611  AE-------------KTAILISILHEVHIQIHQIESQ 634
                           +    +    E+  Q+  +E  
Sbjct: 1134 QTVKELEERTGNLGRQREACMREAEELRTQLRVLEDT 1170


>gi|332200508|gb|EGJ14580.1| ABC transporter family protein [Streptococcus pneumoniae GA41317]
          Length = 633

 Score = 43.7 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KATAEM-SQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|332075448|gb|EGI85917.1| ABC transporter family protein [Streptococcus pneumoniae GA41301]
          Length = 633

 Score = 43.7 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KATAEM-SQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|301760108|ref|XP_002915861.1| PREDICTED: coiled-coil alpha-helical rod protein 1-like [Ailuropoda
           melanoleuca]
          Length = 867

 Score = 43.7 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 26/277 (9%), Positives = 79/277 (28%), Gaps = 17/277 (6%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD--ERAELEIHLKNCINHIKDQKLR 421
                    KL+  S+       +                +    +    ++ I+    R
Sbjct: 510 HTAAAEEQLKLVANSVSSFQTWLQSTVAEVERAVTQLPSLSSRVSYAVRRVHTIQGLMAR 569

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                A+    Q+     +          +            Q        +   +++  
Sbjct: 570 KL---ALAQLRQESCPPPLPATDVSLELEQLREERNRLDAEVQLSAHIIQQEVGRAREQG 626

Query: 482 LREAALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             E   L  +       LQ   + LA++       ++           +       + Q 
Sbjct: 627 DAERQRLSEVAQQLEQELQRTQESLANVGLQLEAARQ--------GQRESTQEAASLRQE 678

Query: 541 LCERGF---GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           L ++       L +++             TE  + + R+ + +A+   ++ +  + +++E
Sbjct: 679 LTQQQEIYGQALQEKVAEVETRLREQLLETERRLNEARREHGKAVVSLRQMQRKATREKE 738

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             +++ ++  +   E+   L   L E+    + + + 
Sbjct: 739 RNQELRRLQDEARKEEGLRLTQRLQELERDKNFMLAT 775


>gi|296100929|ref|YP_003611075.1| hypothetical protein ECL_00560 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055388|gb|ADF60126.1| hypothetical protein ECL_00560 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 1107

 Score = 43.7 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 80/222 (36%), Gaps = 22/222 (9%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
                   + +      K     + +   S +   ++L + K S + + +   ++    N
Sbjct: 19  AATAPDAKQITQELEQAKAAKPAQPETVESLQSALNALEERKGSLERAQQYQQVID---N 75

Query: 494 HPAILQEQYQELADIRYDNNEL------QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
            P + Q    +L+++R +  ++        L   +     +          ++   R   
Sbjct: 76  FPKLSQTLRNQLSNLRDEPRDVPAGMTSDALNQEILQVSSQLLEKSRLAQQEQERAREIA 135

Query: 548 ELLKQLDRQVRDAGLWSATTEANIV----DVRQGYQQALALYKRFRLLSRQKEEIE---- 599
           + L QL +Q  DA       E  I     +  Q   Q L+L  +   L    +E+E    
Sbjct: 136 DSLSQLPQQQTDARRQLNEVERRIGTQTGNTPQNQAQNLSLQAQSARLKALVDELELAQL 195

Query: 600 -----KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                ++++++ ++   +++  L + L  +  Q++    +EA
Sbjct: 196 SANNRQELSRMRSELAQKQSEQLDAYLQALRNQLNSQRQREA 237


>gi|301110376|ref|XP_002904268.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262096394|gb|EEY54446.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 598

 Score = 43.7 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 47/120 (39%), Gaps = 7/120 (5%)

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
             E+++    ++ QRL      +  + ++ Q R         E     + Q     + L 
Sbjct: 414 LFEREHRNDSQLVQRLQNE-LADAKRFVEAQARRQNDLEYVNEDLERRLEQEALDRITLD 472

Query: 586 KR----FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI--LHEVHIQIHQIESQEAMIE 639
            +     +   ++K E+++Q+    A+ + E     ++   L     +++++  ++  IE
Sbjct: 473 AQKAEDEKRWQQEKAELQEQLKSWEARFDEETRRRSMAEERLRRAEKELYRMHQKKYDIE 532


>gi|260802925|ref|XP_002596342.1| hypothetical protein BRAFLDRAFT_76142 [Branchiostoma floridae]
 gi|229281597|gb|EEN52354.1| hypothetical protein BRAFLDRAFT_76142 [Branchiostoma floridae]
          Length = 2545

 Score = 43.7 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              +    +L K L ++ ++        +       +  +             RQ  +++
Sbjct: 536 HEKDAENQQLKKSLRKKEQEIDQLQQAAQEADDQADEALRDK----------DRQLRDLQ 585

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           KQ+    ++ + ++  I      ++     Q++S+E +I+
Sbjct: 586 KQLKDTRSRADTDRENITQQHKTQLEETQRQLQSKEQIIQ 625


>gi|189042437|sp|O08788|DCTN1_MOUSE RecName: Full=Dynactin subunit 1; AltName: Full=150 kDa
           dynein-associated polypeptide; AltName: Full=DAP-150;
           Short=DP-150; AltName: Full=p150-glued
          Length = 1281

 Score = 43.7 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%)

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
                  L +L    +      +   +   +  DL              L ++    +  
Sbjct: 238 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 297

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                      L  E         ++E E       +   +LEI          D     
Sbjct: 298 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 357

Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Y  + + ++  +L    +           +     +  +  +Q L      + +L ++ S
Sbjct: 358 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVWQQRERLQEELS 417

Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538
             E+ +        A L  +E  + L D   +  E +++L   +       +     + +
Sbjct: 418 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 477

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R  E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    
Sbjct: 478 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 537

Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
           ++   +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 538 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595



 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 79/268 (29%), Gaps = 19/268 (7%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
           P  +    R          +         K  +  ++  K++    Q  + ++Q+  Q  
Sbjct: 213 PSKEEEGLRAQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQE-QQAD 271

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
           +       R   K A    ++   +    +  ++     K    E A   +L      L+
Sbjct: 272 LQRRLKEARKEAKEALEAKERYMEEMADTADAIEMATLDKEMAEERA--ESLQQEVEALK 329

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           E+  EL        +L+ L + +     +      +            + L ++      
Sbjct: 330 ERVDEL------TTDLEILKAEIEEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSSS 383

Query: 560 AGLWSAT----TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
                       E    ++   +QQ   L +         +E+++Q+      G  E   
Sbjct: 384 EKQEHVKLQKLMEKKNQELEVVWQQRERLQEELSQAESTIDELKEQVDAA--LGAEEMVE 441

Query: 616 ILISILHEVHIQIHQIESQ----EAMIE 639
           +L      +  ++ ++       EAM E
Sbjct: 442 MLTDRNLNLEEKVRELRETVGDLEAMNE 469


>gi|168576161|ref|ZP_02722055.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae MLV-016]
 gi|183577922|gb|EDT98450.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae MLV-016]
          Length = 633

 Score = 43.7 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KATAEM-SQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|149040859|gb|EDL94816.1| CDC42 binding protein kinase alpha, isoform CRA_a [Rattus
           norvegicus]
          Length = 1732

 Score = 43.7 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 47/107 (43%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV +        E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKSLKEEIEKLRKQVAEVNHLEQQLEEANSVRRELDDAFRQIKAFEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           E+ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 ELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|81900535|sp|Q8CJ40|CROCC_MOUSE RecName: Full=Rootletin; AltName: Full=Ciliary rootlet coiled-coil
            protein
 gi|25137573|gb|AAN73044.1| rootletin [Mus musculus]
          Length = 2009

 Score = 43.7 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 67/224 (29%), Gaps = 12/224 (5%)

Query: 420  LRYYYSQAIRDRLQQL------FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             R +  + +    +QL       ++ + E        ++ AR ++     +  +   L  
Sbjct: 829  ERSHLQEQLAQLSRQLSGRDQELEQALRESQRQVEALERAAREKEAMAKERAGLAVKLAA 888

Query: 474  GKLSKKPSLREAALLLTLINHPAI---LQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
             +   +    EA  +   +   A+   L +  ++LA +     +L+     L     E  
Sbjct: 889  AEREGRTLSEEA--IRLRLEKEALESSLFDVQRQLAQLEARREQLEADSQALL-LAKETL 945

Query: 531  YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                  + Q++        L +     +          +         +    L      
Sbjct: 946  TGELAGLRQQVTSTEEKAALDKELMTQKLVQAEREAQASLREQRAAHEEDLQRLQHEKEA 1005

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              R+ +    Q+     +   E  A + +   E+  +I  ++ +
Sbjct: 1006 AWRELQAERAQLQGQLQQEREELLARMEAEKEELSKEIAALQQE 1049



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 67/217 (30%), Gaps = 23/217 (10%)

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
            +    K +          +  A  R+Q+   +  +Q    + + + +    E A L   +
Sbjct: 962  KAALDKELMTQKLVQAEREAQASLREQRAAHEEDLQRLQHEKEAAWRELQAERAQLQGQL 1021

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELL 550
                  QE+ + LA +  +  EL K  + L  +  E       E  Q L   E     L 
Sbjct: 1022 Q-----QEREELLARMEAEKEELSKEIAALQQERDEGLLLAESEKQQALSLKESEKTALS 1076

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L          S   E    D +   +Q          L+ +  ++  Q+ + TA   
Sbjct: 1077 EKLMGTRHSLAAISLEMERQKRDAQSRQEQDRNTL---NALTSELRDLRAQLEEATAAHA 1133

Query: 611  AE-------------KTAILISILHEVHIQIHQIESQ 634
                           +    +    E+  Q+  +E  
Sbjct: 1134 QTVKELEERTGNLGRQREACMREAEELRTQLRVLEDT 1170


>gi|39104485|dbj|BAC65567.3| mKIAA0445 protein [Mus musculus]
          Length = 1598

 Score = 43.7 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 67/224 (29%), Gaps = 12/224 (5%)

Query: 420 LRYYYSQAIRDRLQQL------FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            R +  + +    +QL       ++ + E        ++ AR ++     +  +   L  
Sbjct: 439 ERSHLQEQLAQLSRQLSGRDQELEQALRESQRQVEALERAAREKEAMAKERAGLAVKLAA 498

Query: 474 GKLSKKPSLREAALLLTLINHPAI---LQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
            +   +    EA  +   +   A+   L +  ++LA +     +L+     L     E  
Sbjct: 499 AEREGRTLSEEA--IRLRLEKEALESSLFDVQRQLAQLEARREQLEADSQALL-LAKETL 555

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 + Q++        L +     +          +         +    L      
Sbjct: 556 TGELAGLRQQVTSTEEKAALDKELMTQKLVQAEREAQASLREQRAAHEEDLQRLQHEKEA 615

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             R+ +    Q+     +   E  A + +   E+  +I  ++ +
Sbjct: 616 AWRELQAERAQLQGQLQQEREELLARMEAEKEELSKEIAALQQE 659


>gi|16758474|ref|NP_446109.1| serine/threonine-protein kinase MRCK alpha [Rattus norvegicus]
 gi|81174934|sp|O54874|MRCKA_RAT RecName: Full=Serine/threonine-protein kinase MRCK alpha; AltName:
           Full=CDC42-binding protein kinase alpha; AltName:
           Full=Myotonic dystrophy kinase-related CDC42-binding
           kinase alpha; Short=MRCK alpha; Short=Myotonic dystrophy
           protein kinase-like alpha
 gi|2736151|gb|AAC02941.1| mytonic dystrophy kinase-related Cdc42-binding kinase [Rattus
           norvegicus]
          Length = 1732

 Score = 43.7 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 47/107 (43%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV +        E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKSLKEEIEKLRKQVAEVNHLEQQLEEANSVRRELDDAFRQIKAFEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           E+ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 ELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|328705451|ref|XP_001945269.2| PREDICTED: rho-associated protein kinase 2-like [Acyrthosiphon pisum]
          Length = 1366

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 86/277 (31%), Gaps = 12/277 (4%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            +   A +    E+  L ++   RE +        +           +  ++DQ     Y 
Sbjct: 786  HISEATQLRAREAQLLREVTLLRENKRAIEEELHKLKTEHSVTDLQMKELQDQLEAEQYF 845

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL--- 482
              +        ++ + +        ++       +         S    +   + ++   
Sbjct: 846  STLYKTQAAELREEVEDRGKGAAELEEERGSLAHQLQIALARADSEALARSIAEETIIDL 905

Query: 483  -REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             +E  +    +           +L    +  N L+++ + L     EQ     EE+  +L
Sbjct: 906  DKEKTMRELELRDSQ--NRHRNDLESKEFTLNNLREVENELKKKM-EQLIKDNEELKNQL 962

Query: 542  ---CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLSRQKEE 597
                E      +++L++  +            +  + +   +     K + ++ S     
Sbjct: 963  TIIQEESKKNFIEELEKLRKQLKQEQLLKAQAVNKLAEIMNRKDNTTKGKSKVSSADLRR 1022

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             EK+  ++  +   E+       + +   ++ +++SQ
Sbjct: 1023 KEKECRKLQQELTQER-EKYNQEVTKWQKELQELQSQ 1058


>gi|326670258|ref|XP_003199176.1| PREDICTED: hypothetical protein LOC100536078 [Danio rerio]
          Length = 1422

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 91/260 (35%), Gaps = 18/260 (6%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHL-KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
           D     E E           + +  L     + I+ +K R    Q  ++R ++L ++   
Sbjct: 557 DRQMIAEIEKEKELERQREMKRQRDLEIEKQSKIEREKRREAEIQKEKERQKELERQREQ 616

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
           E     +  ++    R +    +     +  +    ++   R+              +E+
Sbjct: 617 ERERQRQIERQREIERQKLKQIEYERMKAAERELEQQREFERQRQ--------KEFEREK 668

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
            + L   R    E +K    +  +   Q     +   +R  +R   +  ++++RQ     
Sbjct: 669 ERMLEQERLRLREFEK-QKEIEKERERQLELERQREIERQKQRELEKQ-REIERQKEIER 726

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQK-----EEIEKQIAQVTAKGEAEKTAI 616
                 +  +   ++  ++     +R + L RQ+      E+E+Q+ ++  + E EK   
Sbjct: 727 QRELQRQRELEKQKEQEREKQRHLERQKELDRQRELERQRELERQL-EIERQKEIEK-QK 784

Query: 617 LISILHEVHIQIHQIESQEA 636
                 ++ + I +   Q+A
Sbjct: 785 EFERQKQMDLDIERWTRQKA 804



 Score = 40.6 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 76/234 (32%), Gaps = 5/234 (2%)

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
                  +    ++ R    +   +  +Q+  +   E     +   K  R  + +  S+ 
Sbjct: 531 NEAGPITDTKLQERERQKAVREGFEIDRQMIAEIEKEKELERQREMKRQRDLEIEKQSKI 590

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
             +         +K   +E               E+ +E+   +    E +++ +    +
Sbjct: 591 EREKRREAEIQKEKERQKELERQREQERERQRQIERQREIERQKLKQIEYERMKAA-ERE 649

Query: 526 FVEQKYFLPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQQAL 582
             +Q+ F  +   +   E+     +   +L    +   +      +  +   R+  +Q  
Sbjct: 650 LEQQREFERQRQKEFEREKERMLEQERLRLREFEKQKEIEKERERQLELERQREIERQKQ 709

Query: 583 ALYKRFRLLSRQKE-EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
              ++ R + RQKE E ++++ +     + ++         E   ++ +    E
Sbjct: 710 RELEKQREIERQKEIERQRELQRQRELEKQKEQEREKQRHLERQKELDRQRELE 763


>gi|327293772|ref|XP_003231582.1| myosin type II heavy chain [Trichophyton rubrum CBS 118892]
 gi|326466210|gb|EGD91663.1| myosin type II heavy chain [Trichophyton rubrum CBS 118892]
          Length = 2407

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 81/267 (30%), Gaps = 25/267 (9%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
             + +R               L   +K  +   +         + I+    +  Q    + 
Sbjct: 895  RIIQRNFHLYLNLKSSPWWRLFATMKPLLGETRTAGEVKKRDEKIQQLEAKAQQDIAEKQ 954

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAILQE 500
                   K     +  +   +     +L K ++ K+  LRE  L   L   I     L++
Sbjct: 955  RIEEERRKIETEMQRIRKTLESERSLALDKEEIFKRLQLREVELSEKLAGAIADQESLED 1014

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
            Q  EL   +      +K+   L  D    +     +I +RL      EL +++    +  
Sbjct: 1015 QLDELIAAK------KKIEHEL--DLRRGQLEQAAQIMERLEGEK-KELQERISDMEKKL 1065

Query: 561  GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA----- 615
                +T       +    Q+   L     +  ++ +++E ++     + + E        
Sbjct: 1066 KSVESTHGEYDEKIEALNQEINTLNSHLAMKDKKLQDLEAKLLSSDQQLDLELANTTKEL 1125

Query: 616  --------ILISILHEVHIQIHQIESQ 634
                     L+    E+  QI  + S 
Sbjct: 1126 EGSKKQIKQLLEENREIQRQIVDLSST 1152


>gi|313791777|gb|EFS39888.1| DivIVA domain protein [Propionibacterium acnes HL110PA1]
 gi|313802136|gb|EFS43368.1| DivIVA domain protein [Propionibacterium acnes HL110PA2]
 gi|313838468|gb|EFS76182.1| DivIVA domain protein [Propionibacterium acnes HL086PA1]
 gi|314963075|gb|EFT07175.1| DivIVA domain protein [Propionibacterium acnes HL082PA1]
 gi|315080323|gb|EFT52299.1| DivIVA domain protein [Propionibacterium acnes HL078PA1]
 gi|327452873|gb|EGE99527.1| DivIVA domain protein [Propionibacterium acnes HL092PA1]
          Length = 361

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 3/148 (2%)

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              I     + +       +  +N  L+     L S    ++    + ++          
Sbjct: 23  YRAIEVDDFVDKVEAAFMTLTDENERLKAQVEALRSGEPGEQRPDQDLLN---ENEHLRA 79

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            +++L  Q     + S   +      +   ++A  L +    L  Q EE+ +   +    
Sbjct: 80  QVEELRSQQNGRSVNSGEVDRAKAAQQDAEKRARQLEQERVSLQSQVEELRQAARRPGQD 139

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636
            +  + A L S    +  Q+   +S  A
Sbjct: 140 IDPAEVARLRSENERLGAQLRDAQSLAA 167


>gi|307067704|ref|YP_003876670.1| ABC transporter ATPase [Streptococcus pneumoniae AP200]
 gi|306409241|gb|ADM84668.1| ATPase component of ABC transporters with duplicated ATPase domains
           [Streptococcus pneumoniae AP200]
          Length = 633

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KATAEM-SQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|302387894|ref|YP_003823716.1| zinc finger CHC2-family protein [Clostridium saccharolyticum WM1]
 gi|302198522|gb|ADL06093.1| zinc finger CHC2-family protein [Clostridium saccharolyticum WM1]
          Length = 337

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          YYCF+   KG+ + F+    G  F  +V+ +
Sbjct: 59 YYCFTTEKKGNIVDFVKDYFGQDFKGAVKMI 89


>gi|213585060|ref|ZP_03366886.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 67

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 40/66 (60%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           DGD  G  AA++A++  + ++  G +V F+ L  GEDPD+ +R  GK AFE  + ++ PL
Sbjct: 1   DGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVRKEGKAAFEARMEQAQPL 60

Query: 382 VDMLWK 387
              L+ 
Sbjct: 61  STFLFN 66


>gi|123269759|emb|CAM24809.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
 gi|168985820|emb|CAQ10598.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
          Length = 729

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 514 LQLEVARQCQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 573

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 574 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 633


>gi|12667788|ref|NP_002464.1| myosin-9 [Homo sapiens]
 gi|6166599|sp|P35579|MYH9_HUMAN RecName: Full=Myosin-9; AltName: Full=Cellular myosin heavy chain,
            type A; AltName: Full=Myosin heavy chain 9; AltName:
            Full=Myosin heavy chain, non-muscle IIa; AltName:
            Full=Non-muscle myosin heavy chain A; Short=NMMHC-A;
            AltName: Full=Non-muscle myosin heavy chain IIa;
            Short=NMMHC II-a; Short=NMMHC-IIA
 gi|3169000|emb|CAB05105.1| myosin, heavy chain 9, non-muscle [Homo sapiens]
 gi|47678583|emb|CAG30412.1| MYH9 [Homo sapiens]
 gi|53791227|dbj|BAD52439.1| non-muscle myosin heavy polypeptide 9 [Homo sapiens]
 gi|109451392|emb|CAK54557.1| MYH9 [synthetic construct]
 gi|109451988|emb|CAK54856.1| MYH9 [synthetic construct]
 gi|119580500|gb|EAW60096.1| myosin, heavy polypeptide 9, non-muscle, isoform CRA_a [Homo sapiens]
 gi|119580502|gb|EAW60098.1| myosin, heavy polypeptide 9, non-muscle, isoform CRA_a [Homo sapiens]
 gi|152012654|gb|AAI50170.1| Myosin, heavy chain 9, non-muscle [synthetic construct]
 gi|152012993|gb|AAI50171.1| Myosin, heavy chain 9, non-muscle [synthetic construct]
 gi|166788562|dbj|BAG06729.1| MYH9 variant protein [Homo sapiens]
 gi|168270842|dbj|BAG10214.1| myosin-9 [synthetic construct]
          Length = 1960

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 87/265 (32%), Gaps = 28/265 (10%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EKL ++     +     E E        ++ ELE    +    +++++ R  + QA + 
Sbjct: 880  AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKK 939

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++QQ  Q+   +        +K    +       + ++   +  +       +E  LL  
Sbjct: 940  KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEEQIILEDQNCKLAKEKKLLE- 998

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +                      E    +L 
Sbjct: 999  -----DRIAEFTTNLTEEEEKSKSLAKLKNK--------------------HEAMITDLE 1033

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L R+ +       T      D      Q   L  +   L  Q  + E+++    A+ E
Sbjct: 1034 ERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVE 1093

Query: 611  AEKTAILIS--ILHEVHIQIHQIES 633
             E     ++   + E+  QI +++ 
Sbjct: 1094 EEAAQKNMALKKIRELESQISELQE 1118



 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 70/228 (30%), Gaps = 15/228 (6%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            + ++ +    + +R+   +L  +            K     +D +       ++     K
Sbjct: 1579 QSEEKKKQLVRQVREMEAELEDERKQRSMAVAARKKLEMDLKDLEAHIDSANKNRDEAIK 1638

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +K   +    +  L         + + LA  + +  +L+ + + +     E       
Sbjct: 1639 QLRKLQAQMKDCMREL---DDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERA 1695

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +   +   EL  ++        L           + Q  ++         L++ + 
Sbjct: 1696 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELINDRL 1752

Query: 596  EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIESQ 634
            ++   QI Q+      E++           L     E+ +++ ++E  
Sbjct: 1753 KKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKVKLQEMEGT 1800


>gi|42558935|sp|Q8HZ59|CCHCR_GORGO RecName: Full=Coiled-coil alpha-helical rod protein 1; AltName:
           Full=Alpha-helical coiled-coil rod protein
 gi|23296128|gb|AAN12280.1| HCR [Gorilla gorilla]
          Length = 782

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 567 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 626

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 627 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 686


>gi|87123506|ref|ZP_01079357.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit
           ClpB [Synechococcus sp. RS9917]
 gi|86169226|gb|EAQ70482.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit
           ClpB [Synechococcus sp. RS9917]
          Length = 913

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    +L   + S     K  + E+    L       L  +   +     L  + 
Sbjct: 432 AIDLIDEAAAQLKMDVTS-----KPQVVEDAETDLRRVELALLAAEQAPEAERVQLQRSR 486

Query: 567 TEAN--IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHE 623
            EA+  + D+R  +Q      +  R L ++ E +   IA+    G+ E+ A L    LH 
Sbjct: 487 LEASACLEDLRGRWQAERDQLEELRQLLQEDETLRHAIAEAERNGDLEEAARLEYDQLHR 546

Query: 624 VHIQIHQIES 633
           V  +   +E 
Sbjct: 547 VQQRRTDLEQ 556


>gi|71423443|ref|XP_812463.1| kinesin [Trypanosoma cruzi strain CL Brener]
 gi|70877245|gb|EAN90612.1| kinesin, putative [Trypanosoma cruzi]
          Length = 1170

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 22/291 (7%), Positives = 96/291 (32%), Gaps = 17/291 (5%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R     A       +   + +   +   ++      ++ +           +    L   
Sbjct: 698 RNKRPDASNSAEQVAELNIRVQNLKREVDKMRKYDAKKEQYMQRYSFFYVDLASDILHRI 757

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             Q   + ++Q+   +I+++   G   ++  +   ++    R      ++       +  
Sbjct: 758 MLQKEEEFVRQVAHLFISQNGEMGDGIRRLNKAHREEMEQMRKRHVEEMEELHKLSSARL 817

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           + ++  +   +  ++ +   +L  +       ++ +        E+         ++L  
Sbjct: 818 KESIEKSNELYQQLIDKHVDKLNYVEERMMNNKEFYEAELKRLGEENEKTRVRYEEQLDR 877

Query: 544 R--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                 +  ++L  Q+         +      +++  +    + +R   + R +++ E++
Sbjct: 878 ARTQHQKETRKLREQLSSGASDRQRSGEAAKRLQE--EHEKEMNRRQEEMDRYRQDKEQE 935

Query: 602 IAQVTAKGEAEKTA-------------ILISILHEVHIQIHQIESQEAMIE 639
           I+++  + + EK                L   ++E+  ++ + +++   +E
Sbjct: 936 ISRLKKQVDNEKLRYESDMLEKERQRRSLEREVNELRRELLKAQTERNRME 986


>gi|326435479|gb|EGD81049.1| hypothetical protein PTSG_13129 [Salpingoeca sp. ATCC 50818]
          Length = 660

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 40/312 (12%), Positives = 103/312 (33%), Gaps = 31/312 (9%)

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
            FVL   G D              +L  E++   + L     E +         + E  +
Sbjct: 5   RFVLGQDGRD------RGQSDQTRQLHQENVMRANQLSDERVETKRRMRLAAEMQREEAI 58

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              +   K +K +   ++   +RL Q       E     +  ++  +   +    +R +Q
Sbjct: 59  AQQLEMEKQRKEQAELARQQEERLAQELDSIRREKMRDEKLRQQIRQTAPELRDLERKLQ 118

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN--------NELQKLWS 520
           ++ V  + S + + R+              +E  + +     +          E +K  +
Sbjct: 119 AAYVTRERSAQITERQHMTATARQEDLKAAREIEEAVRQAELEEQQKERQQWEEARKYQA 178

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGF-GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
            +     +Q+    E   + L E+    E+++Q+ R+       +   +    +  + + 
Sbjct: 179 DIERQLEDQERRKEEAYQEFLKEKLMIDEIVQQIHREDEAEAQRTFEAKQRTKEEMEEFL 238

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--------------EVH 625
           +    + R     ++ +   + I +   + +  + A + + L               E+ 
Sbjct: 239 RQRDEWNRLEA--QEMQRENEAIQRFAEEKQMAERARMRAQLEREAAKESVRQQLGSELA 296

Query: 626 IQIHQIESQEAM 637
            Q  ++E  EA+
Sbjct: 297 RQQQEMEEMEAI 308


>gi|320583505|gb|EFW97718.1| Essential protein involved in intracellular protein transport [Pichia
            angusta DL-1]
          Length = 1440

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 89/263 (33%), Gaps = 27/263 (10%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
               +  K   + +  +D   K+  + R       + +++         +  Q  +    +
Sbjct: 1181 NSDSVVKEYSQKISSLDEKLKKTEKERDAEVSKLKEQVKSLSSGRQELLDSQTSKEAELK 1240

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             ++DRL  + +    + +       +    RD             ++  +  K  ++E  
Sbjct: 1241 KLQDRLTSMEESLKQKENDIEAKGSELNDLRD--------KMKEQLRELVDLKKQMKERE 1292

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
             L T +      +E+ Q+  +++    E  +L           K    EE+  ++ +   
Sbjct: 1293 KLKTELLELEAYRERTQDYDELQQRVAEYDELKR---------KTTDYEELKSKVADH-- 1341

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
                ++L     +        E       +  +    L K+   L ++ ++ + +   + 
Sbjct: 1342 ----EKLQSDYTELQKTLEDYETLKSKAAEHEK----LQKQVVELEQKLKDAKSREEDLV 1393

Query: 607  AKGEAEKTAILISILHEVHIQIH 629
             +GE +   +L+S L E + Q+ 
Sbjct: 1394 PRGEFDDLMLLMSELDEKNKQMK 1416



 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 87/269 (32%), Gaps = 15/269 (5%)

Query: 376  VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL--- 432
              ++       +      S N   +  E    +K      K+++ +      +  +L   
Sbjct: 1059 KNTVTEEKKSLESTISMISLNVEAKDEECRRLMKEAEELRKEKERKLAEFSELEKKLVDY 1118

Query: 433  ----QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
                ++L               K+ A  ++     ++ +Q+   +     +   RE ALL
Sbjct: 1119 DSVKKELDSHLSAIEVLKSDLQKEQAEKKELVAMHEKELQNLNSELSGKAEEIERERALL 1178

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                N  ++++E  Q+++ +     + +K      S   EQ   L     + L  +   E
Sbjct: 1179 AG--NSDSVVKEYSQKISSLDEKLKKTEKERDAEVSKLKEQVKSLSSGRQELLDSQTSKE 1236

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT-- 606
               +L +          + +    D+     +   L  + +   R+  +++KQ+ +    
Sbjct: 1237 --AELKKLQDRLTSMEESLKQKENDIEAKGSELNDLRDKMKEQLRELVDLKKQMKEREKL 1294

Query: 607  --AKGEAEKTAILISILHEVHIQIHQIES 633
                 E E          E+  ++ + + 
Sbjct: 1295 KTELLELEAYRERTQDYDELQQRVAEYDE 1323


>gi|310825809|ref|YP_003958166.1| zinc finger CHC2-family protein [Eubacterium limosum KIST612]
 gi|308737543|gb|ADO35203.1| zinc finger CHC2-family protein [Eubacterium limosum KIST612]
          Length = 330

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 13/92 (14%)

Query: 2  NYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           +  D I  +   I I + +    +D  R         +                     
Sbjct: 4  KFTDDQIDYV-NTINIIDYMEHRGLDLKRTNRRVKVKGWNGL-----------DVTPDGR 51

Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
           +  F+    G  + F++ L  CS+ E+VQ L
Sbjct: 52 KWKDFASGQGGYVIQFVAWLNTCSWKEAVQEL 83


>gi|307182327|gb|EFN69609.1| STE20-like serine/threonine-protein kinase [Camponotus floridanus]
          Length = 1661

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 97/277 (35%), Gaps = 24/277 (8%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-RYYYSQAIRDRLQ 433
                    D +++++             +    L       KDQ+  R+   + + +R  
Sbjct: 1140 DENGKVYDDQIFRKQELRELKMLQKMEQKQFQDLAQKAQFNKDQQEKRFEQERQLLERNA 1199

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI- 492
            +   + +           +  +  D +  S+++      + K  ++   +E  LL   I 
Sbjct: 1200 EADLEALARQQRQQIERAEAQQEVDLRLASKKIRSEQERELKQFREGLKQELRLLKQEID 1259

Query: 493  -----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ------RL 541
                    +  + + ++L      + E +KL+        E        +         L
Sbjct: 1260 LMPKDKRKSAFKIRKEKLEAE---HEEREKLF---LEKLNESHEISLRRLSDSHREKIAL 1313

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEA--NIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             ER F +  +QL R  R+A +W            + +   + +   +R ++L R ++E+E
Sbjct: 1314 MERQFLQQKQQLMRG-REAAIWEQEERQIHERQQLLKKQLKDIFFLQRHQMLIRHEKELE 1372

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
             Q+ ++  + E E           +  +I  +++++E
Sbjct: 1373 -QMKRMNQRKEEELIKRQTVERRNLPKRIRNEMKARE 1408


>gi|300934409|ref|ZP_07149665.1| replicative DNA helicase [Corynebacterium resistens DSM 45100]
          Length = 501

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 11/103 (10%), Positives = 28/103 (27%)

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                        G S           +   +    E  +L  ++     + +  + L  
Sbjct: 32  SANNSQREGGRSGGFSGGKRDKYQDIAREMPQNIGAEQGVLGGMMLDKDAIADVVEILTG 91

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
             +     + ++  ++  + E K   P  +   L   G  E +
Sbjct: 92  DDFYRPAHKTIFDTIWRLYGEGKEVDPVIVAGYLDRDGVLEAV 134


>gi|289549041|ref|YP_003474029.1| ATPase AAA [Thermocrinis albus DSM 14484]
 gi|289182658|gb|ADC89902.1| ATPase AAA-2 domain protein [Thermocrinis albus DSM 14484]
          Length = 984

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 68/212 (32%), Gaps = 12/212 (5%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y     +RL+ L  +   + +      + +      K        + L       +  L 
Sbjct: 383 YRGEFEERLKALIDEVKQKGNVILFIDEVHTVVGAGKAEGAVDASNILKPALARGEIRLI 442

Query: 484 EAALL----LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            A  +      +   PA+ + ++Q +        +  ++   L +               
Sbjct: 443 GATTVDEYRKYIEKDPAL-ERRFQPIYVDEPTEEQTIEILKGLRTKLENHHKV------- 494

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           ++ +      +K   R V    L     +A      +     +A+    + L R+ + ++
Sbjct: 495 KISDEAIEAAVKLTRRYVTFRKLPDKAIDALDQACARKKLSVVAVPPEVQELDRRIKALD 554

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           ++I +   +G  EK A L     ++  +  Q+
Sbjct: 555 EEIQKAFLEGNYEKEAQLKIKKVQLEKERQQL 586


>gi|195131597|ref|XP_002010237.1| GI15822 [Drosophila mojavensis]
 gi|193908687|gb|EDW07554.1| GI15822 [Drosophila mojavensis]
          Length = 1142

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 70/247 (28%), Gaps = 29/247 (11%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY--ITEHSGYG 447
            E   ++T +E       L +    + D +      + + +    LFQ     TE     
Sbjct: 420 MEETHYSTNEELQATLQELADLQTQLSDTQTEN---ERLAEEKDVLFQSLCRQTEMLNES 476

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
           R      +    +   Q    ++  + KL  +    +      ++    +          
Sbjct: 477 RTQINTLQELLLRDTKQAEATTTEREKKLLDQLQTTQEEREALMLKQEEL---------- 526

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
               N EL +L                 ++ Q+        L  QLD    +     A  
Sbjct: 527 ----NAELAELRQ----------SRDTIQLEQQRQRERNALLDSQLDAANAERKQSEAQL 572

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                ++ Q   +   L         + EE+E  +++      ++           +  +
Sbjct: 573 SLAKEEISQRAIEISRLSTLLENARSKIEELEADLSRGDKTDLSDVLDAARREKDALEER 632

Query: 628 IHQIESQ 634
           + +++ Q
Sbjct: 633 LAELQDQ 639


>gi|47938675|gb|AAH72337.1| LOC432244 protein [Xenopus laevis]
          Length = 529

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 100/280 (35%), Gaps = 11/280 (3%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-Q 418
           D       +T  ++   E +       +RE +         +  L          +K  +
Sbjct: 204 DELTAHVNETQRQESASERVERRLQELEREMKTERQKVEHHQDHLGHVSVQLQEALKKKE 263

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L    + +++++L Q  ++ +   +   +Y K+  +    +      +     +   + 
Sbjct: 264 SLAEEVASSLKEKLGQAEREKMQMETELIKYRKRLDQTEGSREALLCQVDDLRAQLLKAD 323

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL-WSFLFSDFVEQKYFLPEEI 537
                   LL   ++H ++L ++  +  + R    E ++L    L    +E    L  ++
Sbjct: 324 DD----RGLLQHQVSHLSLLSQRETQEEERRARTVERRELEKQELERQILE----LRAQL 375

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +        EL + L+++  +    +A  EA   D+ +  +Q + + ++ + +  + E 
Sbjct: 376 SRSAILSEVEELKRSLEQKDHERTQLAAHIEALTSDMDKREKQQMKMLQQLKDIQSRYEI 435

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            E +  Q       E    L  +  E    + ++   EA+
Sbjct: 436 CESERQQAVDHAS-ELNQQLEEMSQEAERYLRELRQTEAL 474


>gi|299148767|ref|ZP_07041829.1| putative transposon-related/mobilization protein [Bacteroides sp.
          3_1_23]
 gi|301311638|ref|ZP_07217564.1| putative transposon-related/mobilization protein [Bacteroides sp.
          20_3]
 gi|15072720|emb|CAC47927.1| hypothetical protein [Bacteroides thetaiotaomicron]
 gi|298513528|gb|EFI37415.1| putative transposon-related/mobilization protein [Bacteroides sp.
          3_1_23]
 gi|300830379|gb|EFK61023.1| putative transposon-related/mobilization protein [Bacteroides sp.
          20_3]
          Length = 317

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 9/81 (11%)

Query: 9  KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH--DEKTPSFHCNDSKGFYYCFS 66
           +L   IP+ +++  Y+     + N+ +  +    PF+  DE+T S   +  +  +Y  S
Sbjct: 4  DELK-RIPLISIL-NYLQIPCARMNSREAWFK--NPFNGGDERTASTKLDIHRNIWYSHS 59

Query: 67 CHVKGDHLSFLSA---LLGCS 84
              G+++ FL         S
Sbjct: 60 EGFGGNNIDFLMKFLDTENLS 80


>gi|78777155|ref|YP_393470.1| DnaB-like helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78497695|gb|ABB44235.1| DnaB-like protein helicase-like protein [Sulfurimonas denitrificans
           DSM 1251]
          Length = 469

 Score = 43.7 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 55/150 (36%), Gaps = 27/150 (18%)

Query: 484 EAALLLTLINHPAI--LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           E A+L TLI +P +  + E    +    +   +   +++ +   +   +     EI   L
Sbjct: 16  ERAILSTLITYPEVDKINEAISIIEANDFYFEQHGLIFNTIIDQYNNDRPID--EITVYL 73

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             +          ++     + +A   A++ D  +          +F  L RQ   +  +
Sbjct: 74  RNKAK-------IQESYSLDVIAANPLASLTDYLKQL--------KFYSLERQITVVAAK 118

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           + +    G+ +K    I+ L  +  ++  +
Sbjct: 119 VKE----GDFKK----INDLQVLQDKMESL 140


>gi|327357331|gb|EGE86188.1| anucleate primary sterigmata protein ApsB [Ajellomyces dermatitidis
            ATCC 18188]
          Length = 1941

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/211 (9%), Positives = 63/211 (29%), Gaps = 6/211 (2%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             +  R     +    +        +   R   +     R   S   +  L  K       
Sbjct: 964  KLGQRRGDGGRSVAGDSIFERSISRAQDRSNSRTSDGTRSRTSDAERESLEIKNGELRDH 1023

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +    + + +I  +  + ++D+   +   Q     +     + +    E           
Sbjct: 1024 VSALKLENQSIRAQLDECMSDLEALDRAYQA---DVEQAEEDLQTIQMERDQAMQIADER 1080

Query: 547  GELLKQLDRQV-RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             E L+ L  +   +        +  I + ++   +    ++  + L  +     + I ++
Sbjct: 1081 EEALQDLKAEAQEELDAMGDELDQKIDECQRMEAELSNQHENLKALQAEMRSASEGIIRL 1140

Query: 606  T--AKGEAEKTAILISILHEVHIQIHQIESQ 634
               A+   +K   +   L + + ++ Q+E  
Sbjct: 1141 EQDAQNNLQKYKAVQQELDDANRELEQMEKS 1171


>gi|291411765|ref|XP_002722159.1| PREDICTED: epidermal growth factor receptor pathway substrate
           15-like 1 [Oryctolagus cuniculus]
          Length = 891

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 53/133 (39%), Gaps = 13/133 (9%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           Q +      + + QK    +E+   L        L++L+ Q +DA       +     +R
Sbjct: 437 QDIREK--EEAIRQKTSEVQELQNDLDRETSS--LQELEAQKQDAQDRLDEMDQQKAKLR 492

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                     ++ +  ++    ++ QI    +  ++++       L+    ++++++ +E
Sbjct: 493 DMLSDV---RQKCQDETQMISSLKTQIQSQESDLKSQE-----DDLNRAKSELNRLQQEE 544

Query: 636 AMIEGFGKMSGRL 648
           A +E     +GR+
Sbjct: 545 AQLEQ-SIQAGRV 556



 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK-----GEAEKTAILISIL----HE 623
           ++    Q+   L +    L +   E E+ I Q T++      + ++    +  L     +
Sbjct: 417 ELDDISQEIAQLQREKYSLEQDIREKEEAIRQKTSEVQELQNDLDRETSSLQELEAQKQD 476

Query: 624 VHIQIHQIESQEA 636
              ++ +++ Q+A
Sbjct: 477 AQDRLDEMDQQKA 489


>gi|291387571|ref|XP_002710334.1| PREDICTED: transcription elongation regulator 1 isoform 1
           [Oryctolagus cuniculus]
          Length = 1092

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 34/348 (9%), Positives = 107/348 (30%), Gaps = 42/348 (12%)

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
              ++ L   +P ++              +   +   +     +         +D DS  
Sbjct: 575 MEDMKKLRHPTPTMLSIQKWQFSMNAIKEEQELMEEINEDEPVKAKKRKRDDNKDIDSEK 634

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
               +   +     ++  ++   K+  +          +  E  L   +   +       
Sbjct: 635 EAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPR------- 687

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y       L    +K + +     R  ++    +++   ++   +  + + K + + +  
Sbjct: 688 YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFS 742

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A              +++ +  +     + + L++   +   +++    +   +++  
Sbjct: 743 EFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKEDSKTRGEKIKS 791

Query: 544 RGFGELLKQ-LDRQVRDAGLWSATTEANI----------VDVRQGYQQALALYK---RFR 589
             F  L    LD Q R + +                    D+ + Y + +A      + +
Sbjct: 792 DFFELLSNHHLDSQSRWSKVKDKVEGDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEK 851

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 852 ELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 894


>gi|281352762|gb|EFB28346.1| hypothetical protein PANDA_003881 [Ailuropoda melanoleuca]
          Length = 858

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/277 (9%), Positives = 79/277 (28%), Gaps = 17/277 (6%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD--ERAELEIHLKNCINHIKDQKLR 421
                    KL+  S+       +                +    +    ++ I+    R
Sbjct: 510 HTAAAEEQLKLVANSVSSFQTWLQSTVAEVERAVTQLPSLSSRVSYAVRRVHTIQGLMAR 569

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                A+    Q+     +          +            Q        +   +++  
Sbjct: 570 KL---ALAQLRQESCPPPLPATDVSLELEQLREERNRLDAEVQLSAHIIQQEVGRAREQG 626

Query: 482 LREAALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             E   L  +       LQ   + LA++       ++           +       + Q 
Sbjct: 627 DAERQRLSEVAQQLEQELQRTQESLANVGLQLEAARQ--------GQRESTQEAASLRQE 678

Query: 541 LCERGF---GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           L ++       L +++             TE  + + R+ + +A+   ++ +  + +++E
Sbjct: 679 LTQQQEIYGQALQEKVAEVETRLREQLLETERRLNEARREHGKAVVSLRQMQRKATREKE 738

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             +++ ++  +   E+   L   L E+    + + + 
Sbjct: 739 RNQELRRLQDEARKEEGLRLTQRLQELERDKNFMLAT 775


>gi|224538942|ref|ZP_03679481.1| hypothetical protein BACCELL_03839 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519460|gb|EEF88565.1| hypothetical protein BACCELL_03839 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 862

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 68/212 (32%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++    +      +  +++    + +      +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVYVNEPDTLSTISILRGLKERYENHHHVRIKDDAIIAAVELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      +     +          +   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDKPKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           +     L     +      +  +Q    L  R +    + E ++ +  +   +G+  K  
Sbjct: 437 EQIGKELAELKEQEKSYKAK--WQSEKTLVNRIQQNKVEIENLKFEADKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L   + +   ++H ++  +AMI+
Sbjct: 495 EIRYGKLQALNQEIEDTQKELHAMQGDKAMIK 526



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 69/264 (26%), Gaps = 34/264 (12%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + +  +DM              +    +   +K     I        
Sbjct: 220 RILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERLKAVINEVKKSEGDI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E    +  +N P  L                   +   L   +    +        R+ +
Sbjct: 328 ERRFQIVYVNEPDTLSTI---------------SILRGLKERYENHHHV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + D  L     +       +   +  ++ +    +SR+ +++E +  
Sbjct: 366 DAIIAAVELSNRYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIERE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQ 627
            +  + +  K   +   L E+  Q
Sbjct: 426 AIKRENDKPKLEQIGKELAELKEQ 449


>gi|149920119|ref|ZP_01908592.1| tetratricopeptide repeat protein [Plesiocystis pacifica SIR-1]
 gi|149819062|gb|EDM78499.1| tetratricopeptide repeat protein [Plesiocystis pacifica SIR-1]
          Length = 1773

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 40/307 (13%), Positives = 78/307 (25%), Gaps = 28/307 (9%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             + A E          D     E   R     + +  L   L        D   +    
Sbjct: 626 EHEGALEASEHVRAEDPDNATALEASERWARELERKDLLASILPQRAAAELDAAQKRSLH 685

Query: 426 QAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               + L+   +    I ++         +A          R + S           + R
Sbjct: 686 LEAAELLRGEGRMVDAIAQYRAVVEANPSDAETAKLLAELLRPLASGAETLDGLSSVNAR 745

Query: 484 EAALLLT---------LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           E  +            L     +L E    L                + +        + 
Sbjct: 746 EGLIDALSVLAEGSEDLGRKGELLAEVAALLDREADGGERAADCRERIVATLPIDHALVA 805

Query: 535 EEIHQ----RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             +               L + L+R+ + A L        + ++R+     LA   R   
Sbjct: 806 AAVDDLSRYYRSVDAHDTLAELLERRAKSAALEPGMRIHALRELRELSAGPLADPMRECE 865

Query: 591 LSRQKEEIE--------KQIAQVTAKGEAEKTAILISILHEVHI----QIHQIESQEA-M 637
           +  Q  +++          IA++   GE E+   L+    E       +  ++    A M
Sbjct: 866 VLEQLMDLDPGEGRWRDLLIARLREAGEDERAEELLRERLEQAADGPEERAEMLVTMARM 925

Query: 638 IEGFGKM 644
            E  G +
Sbjct: 926 REQAGAL 932


>gi|225543193|ref|NP_001139430.1| rootletin isoform 2 [Mus musculus]
 gi|123265692|emb|CAM16756.1| ciliary rootlet coiled-coil, rootletin [Mus musculus]
          Length = 1845

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 67/224 (29%), Gaps = 12/224 (5%)

Query: 420 LRYYYSQAIRDRLQQL------FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            R +  + +    +QL       ++ + E        ++ AR ++     +  +   L  
Sbjct: 665 ERSHLQEQLAQLSRQLSGRDQELEQALRESQRQVEALERAAREKEAMAKERAGLAVKLAA 724

Query: 474 GKLSKKPSLREAALLLTLINHPAI---LQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
            +   +    EA  +   +   A+   L +  ++LA +     +L+     L     E  
Sbjct: 725 AEREGRTLSEEA--IRLRLEKEALESSLFDVQRQLAQLEARREQLEADSQALL-LAKETL 781

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 + Q++        L +     +          +         +    L      
Sbjct: 782 TGELAGLRQQVTSTEEKAALDKELMTQKLVQAEREAQASLREQRAAHEEDLQRLQHEKEA 841

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             R+ +    Q+     +   E  A + +   E+  +I  ++ +
Sbjct: 842 AWRELQAERAQLQGQLQQEREELLARMEAEKEELSKEIAALQQE 885



 Score = 37.6 bits (85), Expect = 6.1,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 67/217 (30%), Gaps = 23/217 (10%)

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
            +    K +          +  A  R+Q+   +  +Q    + + + +    E A L   +
Sbjct: 798  KAALDKELMTQKLVQAEREAQASLREQRAAHEEDLQRLQHEKEAAWRELQAERAQLQGQL 857

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELL 550
                  QE+ + LA +  +  EL K  + L  +  E       E  Q L   E     L 
Sbjct: 858  Q-----QEREELLARMEAEKEELSKEIAALQQERDEGLLLAESEKQQALSLKESEKTALS 912

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L          S   E    D +   +Q          L+ +  ++  Q+ + TA   
Sbjct: 913  EKLMGTRHSLAAISLEMERQKRDAQSRQEQDRNTL---NALTSELRDLRAQLEEATAAHA 969

Query: 611  AE-------------KTAILISILHEVHIQIHQIESQ 634
                           +    +    E+  Q+  +E  
Sbjct: 970  QTVKELEERTGNLGRQREACMREAEELRTQLRVLEDT 1006


>gi|73958829|ref|XP_536963.2| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM1
            isoform 1 [Canis familiaris]
          Length = 1876

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 781  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 840

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + ++  ++        
Sbjct: 841  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 900

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 901  LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 960

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 961  KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALGRLDDEIA---QKNNALKKI 1017

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1018 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1058


>gi|197101239|ref|NP_001124568.1| dynactin subunit 1 [Pongo abelii]
 gi|55726639|emb|CAH90083.1| hypothetical protein [Pongo abelii]
          Length = 1009

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 102/331 (30%), Gaps = 15/331 (4%)

Query: 330 AAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRE 389
              +  DL              L ++    +             L  E         ++E
Sbjct: 1   MQEQQADLQRRLKEARKEAKEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQE 60

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT-EHSGYGR 448
            E       +   +LEI          D     Y  + + ++  +L    +         
Sbjct: 61  VEALKERVDELTTDLEILKAEIEEKGSDGAASSYQLKQLEEQDARLKDALVRMRDLSSSE 120

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL--QEQYQELA 506
             +     +  +  +Q L      + +L ++ S  E+ +        A L  +E  + L 
Sbjct: 121 KQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMLEMLT 180

Query: 507 DIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
           D   +  E +++L   +       +     + + R  E    E L     +VR+A     
Sbjct: 181 DRNLNLEEKVRELRETVGDLEAMNEMNDELQENARETELELREQLDMAGARVREAQKRVE 240

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE------KTAILIS 619
             +  + D +Q  ++   L    + ++R+    ++   +   +   E      K A   +
Sbjct: 241 AAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQEASVERQQQPPPETFDFKIKFAETKA 300

Query: 620 ILHEVHIQIHQIESQEA-----MIEGFGKMS 645
               + +++ Q+E  +A     ++  F   S
Sbjct: 301 HAKAIEMELRQMEVAQANRHMSLLTAFMPDS 331


>gi|57113901|ref|NP_001009009.1| coiled-coil alpha-helical rod protein 1 [Pan troglodytes]
 gi|42558936|sp|Q8HZ60|CCHCR_PANTR RecName: Full=Coiled-coil alpha-helical rod protein 1; AltName:
           Full=Alpha-helical coiled-coil rod protein
 gi|23296103|gb|AAN12279.1| HCR [Pan troglodytes]
          Length = 782

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 567 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 626

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 627 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 686


>gi|24214579|ref|NP_712060.1| ATP-dependent protease ClpA [Leptospira interrogans serovar Lai
           str. 56601]
 gi|54035856|sp|Q8F509|CLPB_LEPIN RecName: Full=Chaperone protein ClpB
 gi|24195548|gb|AAN49078.1| ATP-dependent protease ClpA [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 860

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
            ++   F+  K     +            + ++LDR  +         EA   +      
Sbjct: 381 RYISDRFLPDKAVDLIDEASSKMRIEIDSMPEELDRANKRIQSLKIEREALKKE------ 434

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           Q  A  +R + L R   E E+    + A+ + EK+   I  L ++  +I + ++ EA  E
Sbjct: 435 QDTASKERLKTLERDLSEQEQNFQTLKARWDLEKSK--IGRLKQIKEEIEKYKNLEAEAE 492

Query: 640 GFGK 643
             G+
Sbjct: 493 RRGE 496


>gi|315288508|gb|EFU47906.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 110-3]
 gi|315297602|gb|EFU56879.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 16-3]
          Length = 1099

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 73/224 (32%), Gaps = 21/224 (9%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
              +     +     +  ++    +  +      +QS+L   +  K    R       + 
Sbjct: 7   WGAYAATAPDSKQITQELEQAKAAKPAQPEVVEALQSALNALEERKGSLERIKQYQEVID 66

Query: 493 NHPAILQEQYQELADIRYDNNE-------LQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
           N+P +      +L ++R D             L   +     +      +   ++   R 
Sbjct: 67  NYPKLSATLRAQLNNMR-DEPRSVSPGMSNDALNQEILQISSQLLDKSRQAQQEQERARE 125

Query: 546 FGELLKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKE 596
             + L QL +Q  DA       E           +   +    Q+ +   +  +   +  
Sbjct: 126 IADSLNQLPQQQTDARRQLNEIERRLGTLTGNTPLNQAQNFALQSDSARLKALVDELELA 185

Query: 597 EI----EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           ++     +++A++ ++   +++  L + L  +  Q++    QEA
Sbjct: 186 QLSANNRQELARLRSELAEKESQQLDAYLQALRNQLNSQRQQEA 229


>gi|303259777|ref|ZP_07345752.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP-BS293]
 gi|303262952|ref|ZP_07348887.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264914|ref|ZP_07350830.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           BS397]
 gi|303266895|ref|ZP_07352773.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           BS457]
 gi|303268931|ref|ZP_07354716.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           BS458]
 gi|302635929|gb|EFL66429.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638982|gb|EFL69442.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP-BS293]
 gi|302641549|gb|EFL71911.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           BS458]
 gi|302643593|gb|EFL73862.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           BS457]
 gi|302645602|gb|EFL75833.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           BS397]
          Length = 633

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KATAEM-SQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|301615432|ref|XP_002937176.1| PREDICTED: disks large homolog 5 [Xenopus (Silurana) tropicalis]
          Length = 1945

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/267 (10%), Positives = 85/267 (31%), Gaps = 20/267 (7%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              + +        +   D + K   + ++     +        +  +   + + LR   
Sbjct: 399 KEERDSVFNEYRLIMSERDQVIKEMDKMQTELELAQGRLKNTSSEKRVASEEMEALRQEL 458

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           + A+ +R      + I E +     +    + + +           +   K  +  + +E
Sbjct: 459 NSALVER-----DRSIFERNELLEKYCHEVKDKAEAQKELDQACKDIETVKEERDVARKE 513

Query: 485 AALLLTLINHPAILQEQYQEL-------ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 +I    +L+E YQ          D+   N E++ L     +   E K    E  
Sbjct: 514 RT--EAIIQRDHLLREYYQARQIQDSATLDMERANKEIEVLRKQYEAMSHELKEATQEAE 571

Query: 538 HQRLCE----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             +       +   +++ + +             +  + ++ +  +    + K+    SR
Sbjct: 572 VAKCRRDWAFQERDKIVAERESIRTLCDNLRRERDRAVSELAEALRNLDDMRKQKNDASR 631

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISI 620
           + +E+++++       +  +   L++ 
Sbjct: 632 ELKELKEKM--DNQMEKEARFRQLMAH 656


>gi|237751920|ref|ZP_04582400.1| replicative DNA helicase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376679|gb|EEO26770.1| replicative DNA helicase [Helicobacter winghamensis ATCC BAA-430]
          Length = 485

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 45/146 (30%), Gaps = 18/146 (12%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A+L +++  P  L    + +    +     + ++  +       +    EE   +L  
Sbjct: 8   ERAVLSSILFDPERLDVLSELIVPEDFSYTPHKNIFLAMLELRRTDRPID-EEFIMKLST 66

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +      ++L   +  + +      A                 +   + R+      +I 
Sbjct: 67  KAHPIEQEELLNVLTTSPIGDIKAYATE--------------IKDASIKRKLHSFATKIQ 112

Query: 604 QVTAKGE---AEKTAILISILHEVHI 626
           + T+       E    L S L+++  
Sbjct: 113 ESTSDASSSTQEIMDYLQSELYKITN 138


>gi|225861077|ref|YP_002742586.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230919|ref|ZP_06964600.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254159|ref|ZP_06977745.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502869|ref|YP_003724809.1| ABC superfamily transporter ATP-binding protein [Streptococcus
           pneumoniae TCH8431/19A]
 gi|225727540|gb|ACO23391.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238464|gb|ADI69595.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus pneumoniae TCH8431/19A]
 gi|327389328|gb|EGE87673.1| ABC transporter family protein [Streptococcus pneumoniae GA04375]
          Length = 633

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KATAEM-SQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|225455880|ref|XP_002275327.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 684

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 71/192 (36%), Gaps = 21/192 (10%)

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI-- 508
           ++  R  + +  SQ+  +      +  KK S  E   L       ++L+   +E+ ++  
Sbjct: 42  EQGLRIAENQENSQKNRRKLAESTRDFKKASPDEKLNL-----FNSLLKGYQEEVDNLTK 96

Query: 509 --RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
             ++  N    ++  L+          P      + E+     L +L+ + R   +    
Sbjct: 97  RAKFGENAFLNIYQKLYEA------PDPYPALASIAEQDMK--LSELESENRKMKVELEE 148

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE--- 623
                  ++        L +R R L +Q EE  K+I ++  +  AE+    + +L E   
Sbjct: 149 FRTEATHLKNQQATIRRLEERNRQLEQQMEEKVKEIVEMKQRSLAEENQKTLEVLKERER 208

Query: 624 -VHIQIHQIESQ 634
            +  Q+ Q +  
Sbjct: 209 LLQDQLRQAKES 220


>gi|71411957|ref|XP_808187.1| myosin heavy chain [Trypanosoma cruzi strain CL Brener]
 gi|70872338|gb|EAN86336.1| myosin heavy chain, putative [Trypanosoma cruzi]
          Length = 3543

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 84/259 (32%), Gaps = 9/259 (3%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
                 E   R  +      +L     +     +D   R   ++ + + L Q         
Sbjct: 2763 EKLTDELAQREADNEKLAEDLAQREADNEKLTEDLAQREADNEKLAEDLAQREADIEKLA 2822

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
                +    N +       ++ L Q      KL+++ + REA +     +      +  +
Sbjct: 2823 EDLAQREADNEKL------AEDLAQREADNEKLAEELAQREADIEKLAEDLAQREADNEK 2876

Query: 504  ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
               ++     + +KL   L     + +    +   +        E L Q +  +      
Sbjct: 2877 LAEELAQREADNEKLAEDLAQREADNEKLAEDLAQREADNEKLAEELAQREADIEKLAED 2936

Query: 564  SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ--VTAKGEAEKTAILISIL 621
             A  EA+   + +   Q  A  ++      Q+E   +++A+     + + EK A  ++  
Sbjct: 2937 LAQREADNEKLAEDLAQREADIEKLTDELAQREADNEKLAEDLAQREADNEKLAEELAQR 2996

Query: 622  H-EVHIQIHQIESQEAMIE 639
              ++      +  +EA IE
Sbjct: 2997 EADIEKLAEDLAQREADIE 3015



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 77/277 (27%), Gaps = 10/277 (3%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
             +      I E L   ++      +    NT    A   +  +   +   D+  +     
Sbjct: 2367 HREMRNARINERLSHPELCDSASPQMPPPNTEVPVAPEIVRSEPLYSVTIDELNKTTTLN 2426

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
                  + L Q+            ++ A          +    +    +   +       
Sbjct: 2427 E--QLTRALAQREADNEKLAEDLAQREADIEKLAEDLAQREADNEKLAEDLAQREADNEK 2484

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            L   L    A  ++  ++LA       + +KL   L     + +    +   +       
Sbjct: 2485 LAEELAQREADNEKLAEDLAQRE---ADNEKLAEDLAQREADNEKLAEDLAQREADNEKL 2541

Query: 547  GELLKQ----LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
             E L Q    +++   D     A  E    D+ Q       L +         E++ + +
Sbjct: 2542 AEDLAQREADIEKLAEDLAQREADNEKLAEDLAQREADNEKLAEELAQREADIEKLAEDL 2601

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            AQ  A  E      L     ++      +  +EA IE
Sbjct: 2602 AQREADNEK-LAEELAQREADIEKLAEDLAQREADIE 2637


>gi|329888636|ref|ZP_08267234.1| replicative DNA helicase [Brevundimonas diminuta ATCC 11568]
 gi|328847192|gb|EGF96754.1| replicative DNA helicase [Brevundimonas diminuta ATCC 11568]
          Length = 473

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/195 (10%), Positives = 54/195 (27%), Gaps = 19/195 (9%)

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
            + +             E ALL  L+    + ++ +  +    +     Q+L++ +    
Sbjct: 5   PRDAEDAANALPLNLEAEQALLGQLMFDNDVHRQVHDVVTAEDFSEPFHQRLYAAIDGLV 64

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
              K   P  +     E        + D       +      AN            A+ +
Sbjct: 65  TAGKLADPTILR---TEFEHDPAFIEFDGPFYLMDMVDRAPPANRARDYAAVVADTAVRR 121

Query: 587 RFRLLSRQ---------------KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           R   ++ +                 +   ++         E    + +    +  ++ ++
Sbjct: 122 RLIKMAAETMHQARNPEVTGYQAVAQARAELEAAERGAAPEDALFVNAHDAAL-ARMDRL 180

Query: 632 ESQEAMIEGFGKMSG 646
           E + A  +  G  +G
Sbjct: 181 ELEVATGKPKGVQTG 195


>gi|300868382|ref|ZP_07113007.1| putative chromosome segregation ATPase-like protein [Oscillatoria
           sp. PCC 6506]
 gi|300333600|emb|CBN58195.1| putative chromosome segregation ATPase-like protein [Oscillatoria
           sp. PCC 6506]
          Length = 606

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 75/216 (34%), Gaps = 7/216 (3%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR--DQKGPSQRLMQSSLVKGKLSK 478
           R    Q +RD  + L      +        +++ + R  + K  +  L +    + +L  
Sbjct: 210 RQSIQQQLRD-TKSLTPTLKEKGLNTITEQRQSLQQRLENAKKLAPVLAERLEKRRQLFS 268

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           + ++ +  LL     +   L+   +  A+++  +    +       +  +      +   
Sbjct: 269 EGAIPQDTLLEAEQEYFQKLESVAELKAELKDLDAREVEAQQQYLENLNQIGALQAK--L 326

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           + +  +      + L+   +   + +   +  + +     +    L  + R      +E+
Sbjct: 327 KDIDVQEATTQQQYLNSLNQINEIQAQLKDLEVKETESQQRHLENLN-QIRQTQADLQEL 385

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           E +  ++      E+     + + +V  +I Q++ Q
Sbjct: 386 ETKAKRLEQD-NLEQLNNKQNPIQDVRREIAQLQQQ 420


>gi|296208096|ref|XP_002750931.1| PREDICTED: protein Hook homolog 1 isoform 2 [Callithrix jacchus]
          Length = 686

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 105/304 (34%), Gaps = 25/304 (8%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D             + ++  + 
Sbjct: 227 DDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQ 286

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      +R +++ L +  +          ++  +    +   +   +            
Sbjct: 287 KLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSE 346

Query: 481 SLREAALLLTLIN----HPAILQEQYQELAD---IRYDNNELQ--KLWSFLFSDFVEQKY 531
           S R   L   +      H A+L+E+ + +     ++  N EL+  ++     +       
Sbjct: 347 SKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTGASAT 406

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALA------- 583
              E +   +    + E+  +L  + +   L    +E   I ++++  +Q          
Sbjct: 407 KSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELET 466

Query: 584 ----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ----IESQE 635
                 +R R L +Q E+++K + +  +K E E ++ L   L     ++ +    ++ ++
Sbjct: 467 EQRLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEDLQKKQ 526

Query: 636 AMIE 639
           A+IE
Sbjct: 527 ALIE 530


>gi|296271403|ref|YP_003654035.1| NLP/P60 protein [Thermobispora bispora DSM 43833]
 gi|296094190|gb|ADG90142.1| NLP/P60 protein [Thermobispora bispora DSM 43833]
          Length = 394

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 61/208 (29%), Gaps = 8/208 (3%)

Query: 425 SQAIRDRLQQL--FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Q ++ R  QL   +  I       R     A    +    +R+      +        L
Sbjct: 40  RQQVKKRADQLDNLKAEIAAARERQRESAAEAERLIEAYNGERVRLKEAQEKYEQAAARL 99

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           R A      I   A++ +  +    +     +L  L++          +     +   + 
Sbjct: 100 RHAEAQYNAIRE-AVVAKATEGGGRLTLT-PQLAALFAA---RGDANGFLERASVLAHIG 154

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-Q 601
                 L + LD +     L S   +A    +    +   A     R + +Q +E+E+ +
Sbjct: 155 GEQEATLRRLLDARRVYQILHSVAAQAYHEQLEAAERARSAKEAAQRAVDKQIQELERLK 214

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIH 629
             +       E     +  L     QI 
Sbjct: 215 RREAELAKRLEAARSRVDRLKRARQQIK 242


>gi|294496457|ref|YP_003542950.1| condensin subunit Smc [Methanohalophilus mahii DSM 5219]
 gi|292667456|gb|ADE37305.1| condensin subunit Smc [Methanohalophilus mahii DSM 5219]
          Length = 1173

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 68/200 (34%), Gaps = 17/200 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
                 E   Y     +     ++ G     ++  L       K    E   + T +N  
Sbjct: 711 ISSTNKEIQQYENEVSRKQMQFEEIGNRGETLEKLLNSKDEELKQIEEERQQMRTEMNE- 769

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
               E+ + L +        Q L   +     +       E++++  +    E L++LD 
Sbjct: 770 --TVEKKEHLEERE------QSLQQNILQIEEKLADSEIPELNKQAED--LDEELRRLDG 819

Query: 556 QVRDAG----LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           ++RD            +     + Q  +Q   + ++ R L  + EE++ +I  + ++ E 
Sbjct: 820 RIRDIDGQINALELDKKYATEKMEQNREQIAQMDEKKRTLKERIEELKNKITSLESELEE 879

Query: 612 --EKTAILISILHEVHIQIH 629
             ++   L   L ++  +  
Sbjct: 880 KKQREEELTGELRQLQGERE 899



 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 45/120 (37%), Gaps = 3/120 (2%)

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            + S   E + +  E   +++     G   + L++ +          E     +R    +
Sbjct: 710 HISSTNKEIQQYENEVSRKQMQFEEIGNRGETLEKLLNSKDEELKQIEEERQQMRTEMNE 769

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    +   L  +++ +++ I Q+  K    +   L     ++  ++ +++ +   I+G
Sbjct: 770 TVE---KKEHLEEREQSLQQNILQIEEKLADSEIPELNKQAEDLDEELRRLDGRIRDIDG 826


>gi|239613271|gb|EEQ90258.1| anucleate primary sterigmata protein ApsB [Ajellomyces dermatitidis
            ER-3]
          Length = 1941

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/211 (9%), Positives = 63/211 (29%), Gaps = 6/211 (2%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             +  R     +    +        +   R   +     R   S   +  L  K       
Sbjct: 964  KLGQRRGDGGRSVAGDSIFERSISRAQDRSNSRTSDGTRSRTSDAERESLEIKNGELRDH 1023

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +    + + +I  +  + ++D+   +   Q     +     + +    E           
Sbjct: 1024 VSALKLENQSIRAQLDECMSDLEALDRAYQA---DVEQAEEDLQTIQMERDQAMQIADER 1080

Query: 547  GELLKQLDRQV-RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             E L+ L  +   +        +  I + ++   +    ++  + L  +     + I ++
Sbjct: 1081 EEALQDLKAEAQEELDAMGDELDQKIDECQRMEAELSNQHENLKALQAEMRSASEGIIRL 1140

Query: 606  T--AKGEAEKTAILISILHEVHIQIHQIESQ 634
               A+   +K   +   L + + ++ Q+E  
Sbjct: 1141 EQDAQNNLQKYKAVQQELDDANRELEQMEKS 1171


>gi|197302498|ref|ZP_03167553.1| hypothetical protein RUMLAC_01226 [Ruminococcus lactaris ATCC
           29176]
 gi|197298396|gb|EDY32941.1| hypothetical protein RUMLAC_01226 [Ruminococcus lactaris ATCC
           29176]
          Length = 333

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 53/167 (31%), Gaps = 19/167 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDR---RKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
            P   ++++   + +   +  Y  ++                    HD    S   ++ K
Sbjct: 7   IPPSVVQEVK-RMDLLTYLKNYEPYELVHFSGNTYTTRT-------HD----SLKISNGK 54

Query: 60  GFYYCFSCHVKG-DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
             +  +S    G   L +L  + G SF+E+V+ LA  A +  P +        + Q  L 
Sbjct: 55  WMW--WSQRTGGRSALDYLIKVRGYSFLEAVELLAERANIQ-PSLSVSENVPMEKQLLLP 111

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
           +  +       +      DK +  +  E G    +       +    
Sbjct: 112 KKNQDDQKVIAYLSGRGIDKEIIQFCLESGRVYESAFHHNAVFVGMD 158


>gi|194227772|ref|XP_001488174.2| PREDICTED: similar to dystrophin [Equus caballus]
          Length = 3715

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 45/422 (10%), Positives = 117/422 (27%), Gaps = 20/422 (4%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +     ++      ++L N    LN + K   +
Sbjct: 2539 ELITAAQNLKNKTSNQEARTIITDRIERI----QSQWDEVQEHLQNRRQQLNEMLKDSTQ 2594

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGD 324
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 2595 WLEAKEEAEQVLGQARAKLESWKEGPYTMDAIQRKITETKQLAKDLRQWQINVDVANDLA 2654

Query: 325  DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK----------TAFEKL 374
               LR         +  +      ++  + +                         F   
Sbjct: 2655 LKLLRDYSADDTRKVHMITENINASWASIHKRVSEQEAALEETHRLLQQFPLDLEKFLAW 2714

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
            + E+    ++L     + R         EL    ++    I+     Y+       ++ +
Sbjct: 2715 LTEAETTANVLQDATHKERLLEDSKGVRELMKQWQDLQGEIEAHTDIYHNLDENGQKILR 2774

Query: 435  LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-IN 493
              +          R    N +  + +  S  +           K+  L    LL+ L + 
Sbjct: 2775 SLEGSDDAIVLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLK 2834

Query: 494  HPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-- 549
               + ++     +   ++  N+  +     L +          E +   L E+    L  
Sbjct: 2835 DDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLEK 2893

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            L Q  R++         T        +   +   L        R+ +E  +++ ++    
Sbjct: 2894 LYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDEALERLQELQEAT 2953

Query: 610  EA 611
            + 
Sbjct: 2954 DE 2955



 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L +  +K   +     +  K        K  S R   ++L+  +      + E  +   
Sbjct: 1718 LLDESEKKKPQQKEDVLKRLKAEMNDMRPKVDSTRDQAANLMANRGDHCRKVVEPKISEL 1777

Query: 491  -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                  I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 1778 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMSEDN 1837

Query: 546  ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                 ELL++ D   +         E  I                        +   Q  
Sbjct: 1838 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 1897

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1898 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 1949


>gi|37577095|ref|NP_899204.1| dystrobrevin beta isoform 4 [Homo sapiens]
 gi|119621124|gb|EAX00719.1| dystrobrevin, beta, isoform CRA_a [Homo sapiens]
          Length = 609

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +        E AL+ + +             + +   + E + +  +   
Sbjct: 355 PTPTKRLQYSQDIPSHLADEHALIASYVARLQHCARVLDSPSRL---DEEHRLIARYAAR 411

Query: 525 DFVEQKYFL--PEEI-HQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E       P ++       +   +L+ +L+ + R+            E       + 
Sbjct: 412 LAAEAGNVTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEK 471

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 472 AQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEELMKLLKE-EEQKQAAQAT 529


>gi|91215359|ref|ZP_01252330.1| hypothetical protein P700755_09603 [Psychroflexus torquis ATCC
           700755]
 gi|91186311|gb|EAS72683.1| hypothetical protein P700755_09603 [Psychroflexus torquis ATCC
           700755]
          Length = 1138

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 118/342 (34%), Gaps = 24/342 (7%)

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
             +  Y + ++    P+IVL    D   L  +Y    +   + +   ++     +  +D 
Sbjct: 368 YDVLNYSIEVIKDEFPKIVLQEKKDSLLLEQSYFFGKITDDYRLTELQL-IYYSTSNKDV 426

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +        +       + P  D+     T+   +    +  E+     +       ++
Sbjct: 427 TTKKEIEISKSNYAEFSYAFPNEDIDLMAGTDYSYYFEVYDNDEVNGRKSSKSKVFSYRQ 486

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 +   + L++             +  + NA  R+ +   ++       + +    
Sbjct: 487 KTE--LEESTENLKRQNTAVEKLSEELKQQKESNATLRELQNKQRKEKNLDYTEKQKLDN 544

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              R+   +  + N+   L+E +++L      N E Q        D +E+     E+  +
Sbjct: 545 FIKRQKQRMEMMKNYSERLKEDFKKL------NPEEQDKAKENLEDRLEKNQKQIEKNQE 598

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL------LSR 593
            L  +   EL  ++DR+  +  L +   E+   +  +  +Q L L KRF +      L+ 
Sbjct: 599 LL--KELDELRDKIDREELNQKLENFDKESKKQE--KNLEQLLELTKRFYVEKKTEKLAE 654

Query: 594 QKEEI---EKQIAQVTA--KGEAEKTAILISILHEVHIQIHQ 630
           + + +   ++ +++       E EK       L E   ++ +
Sbjct: 655 ELKNLAREQEDLSEAEENTSEEQEKLNEKFDKLKEDLKELEE 696


>gi|216904|dbj|BAA02196.1| large component of pyocin AP41 [Pseudomonas aeruginosa]
 gi|446770|prf||1912296A pyocin AP41:SUBUNIT=large
          Length = 777

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 69/260 (26%), Gaps = 24/260 (9%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
                     +  +L    +   + I    +     + I+               G   Y
Sbjct: 42  INKFDLPEGAKIKDLIKRYQYIGSQIPAAIMIRGVQEEIKKSTNTALANVGAIVDGELAY 101

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL-------------TLINHPA 496
                + +     +  L  +S  K    +  + ++  L                 +N+  
Sbjct: 102 LASQKKEKLNPAEATPLQMASAEKAAAVELLASKQKELADARTIANAFFGYDPLTVNYVN 161

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-----ELLK 551
           ++ E Y    D  +  +   K      S    QK  L E     L  R          L 
Sbjct: 162 VMNEIYGRREDKDFSFDNWSK------SYSAAQKIRLIEAKISVLNSRSSALDGKVAELT 215

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           +L R         A  +     + Q  +QA A  +      + + + + ++ ++      
Sbjct: 216 RLQRLEDAQHAAEAARQTEAERLAQEQRQAEARRQAEEARRQAEAQRQAELQRLAEAEAK 275

Query: 612 EKTAILISILHEVHIQIHQI 631
                      E++ ++  I
Sbjct: 276 RVAEAEKKRQDEINARLQAI 295


>gi|15900981|ref|NP_345585.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           TIGR4]
 gi|15903065|ref|NP_358615.1| ABC transporter ATP-binding protein [Streptococcus pneumoniae R6]
 gi|111658011|ref|ZP_01408715.1| hypothetical protein SpneT_02000808 [Streptococcus pneumoniae
           TIGR4]
 gi|116516774|ref|YP_816473.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae D39]
 gi|149024916|ref|ZP_01836317.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP23-BS72]
 gi|14972590|gb|AAK75225.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           TIGR4]
 gi|15458638|gb|AAK99825.1| ABC transporter ATP-binding protein - unknown substrate
           [Streptococcus pneumoniae R6]
 gi|116077350|gb|ABJ55070.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae D39]
 gi|147929539|gb|EDK80533.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP23-BS72]
          Length = 633

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KATAEM-SQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|323702684|ref|ZP_08114345.1| chromosome segregation protein SMC [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532347|gb|EGB22225.1| chromosome segregation protein SMC [Desulfotomaculum nigrificans
           DSM 574]
          Length = 1187

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 89/250 (35%), Gaps = 14/250 (5%)

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLR----YYYSQAIRDRLQQLFQKYITEHSGYGRY 449
             +T  ER EL   ++     +K+   +        Q +  +L  L +  +         
Sbjct: 672 MLHTRRERDELAKEVRELHLQVKEYSEKLAASQNIQQELASKLHALQEAVVALDLEIQAA 731

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL-ADI 508
             +  +  +    S+   Q +  +     +     + +     +  A  +EQ  +L   I
Sbjct: 732 DMEVQKTAEDINRSKNRDQENQWELTNVLQEIKNWSEVADKAGHELAAAEEQLNKLQDTI 791

Query: 509 RYDNNELQKLWS--FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
                EL             + Q+     E+ Q   + G  +++ +L++++    +   T
Sbjct: 792 NITQKELAVARENKAALEQTMHQENVRQAELRQA--QLGLEKIIGRLEQELASKRVSQET 849

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK--QIAQVTAKGEAEKTAILISILHEV 624
           ++  ++ + +   +   L  +   L ++ + +E+   +A      + ++       + ++
Sbjct: 850 SKQALLQLAE---RKQELSTQQSQLVQELQRLEQVKALAVAELADKQQQRDAAAETVKQL 906

Query: 625 HIQIHQIESQ 634
             Q+ +++ Q
Sbjct: 907 QAQLEELQEQ 916


>gi|153854521|ref|ZP_01995791.1| hypothetical protein DORLON_01786 [Dorea longicatena DSM 13814]
 gi|149752830|gb|EDM62761.1| hypothetical protein DORLON_01786 [Dorea longicatena DSM 13814]
          Length = 333

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 53/167 (31%), Gaps = 19/167 (11%)

Query: 3   YPRDFIKDLLIHIPISNLIGQYVDWDR---RKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59
            P   ++++   + +   +  Y  ++                    HD    S   ++ K
Sbjct: 7   IPPSVVQEVK-RMDLLTYLKNYEPYELVHFSGNTYTTRT-------HD----SLKISNGK 54

Query: 60  GFYYCFSCHVKG-DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
             +  +S    G   L +L  + G SF+E+V+ LA  A +  P +        + Q  L 
Sbjct: 55  WMW--WSQRTGGRSALDYLIKVRGYSFLEAVELLAERANIQ-PSLSVSENVPMEKQLLLP 111

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
           +  +       +      DK +  +  E G    +       +    
Sbjct: 112 KKNQDDQKVIAYLSGRGIDKEIIQFCLESGRVYESAFHHNAVFVGMD 158


>gi|149012890|ref|ZP_01833803.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP19-BS75]
 gi|182684137|ref|YP_001835884.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           CGSP14]
 gi|147763179|gb|EDK70119.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP19-BS75]
 gi|182629471|gb|ACB90419.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           CGSP14]
 gi|301801997|emb|CBW34726.1| ABC transporter ATP-binding protein [Streptococcus pneumoniae
           INV200]
          Length = 633

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KATAEM-SQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|119872396|ref|YP_930403.1| SMC domain-containing protein [Pyrobaculum islandicum DSM 4184]
 gi|119673804|gb|ABL88060.1| SMC domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 790

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 43/335 (12%), Positives = 111/335 (33%), Gaps = 56/335 (16%)

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLW-----KRETENRSFNTPDERAELEIHLKN 410
           GED         + A ++ + E   ++          R+ E+ S    +    L    K+
Sbjct: 272 GEDVGLDAVEKIRDALQEALEEYEHILGHELLEKLTTRDLESLSAAMVEAYEALVRLSKD 331

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
             + I +  +R  Y Q +  R+++L  +     +   R  +   R ++ +   Q L  + 
Sbjct: 332 LESQISE--VRKTYEQYLA-RVKKLEDEIKEVETKLRRLERSYIRFKELQKSFQSLETAK 388

Query: 471 LVKGKLSKKPSLREAALLLT--------------LINHP------------AILQEQYQE 504
               +L ++    E ++                 +   P             I +E   +
Sbjct: 389 AALNELKRRLEETEKSMAYISALKTVSLYIAEIGVNRCPICGSPISREVALNIAREVESK 448

Query: 505 LADIRYDNNELQ-KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
             ++ ++   L+ ++  +     V++   L  E+ + L  +   E LK    ++    + 
Sbjct: 449 FGELIHEVENLKERIREY--EKAVDEMEILSGEVAEYLSTKNRLEELKLEREEIIKKMIQ 506

Query: 564 SATTEANIVDVRQGYQQALAL---------------YKRFRLLSRQKEEIEKQIAQV--- 605
           +      +    +     +                   R R L R+ +E+E+ + +    
Sbjct: 507 AEKALKQLERRVEKLHSLITRVDKRTILDALSKYGKMLRVRELKRRLKELEEMLNKAGVV 566

Query: 606 TAKGEAEKT-AILISILHEVHIQIHQIESQEAMIE 639
               + E     +   L     ++ ++  ++A++E
Sbjct: 567 REILDVEMRWREITEELERTSSRLAELYREKAVLE 601


>gi|45657869|ref|YP_001955.1| ATP-dependent protease [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|54035772|sp|Q72QU2|CLPB_LEPIC RecName: Full=Chaperone protein ClpB
 gi|45601110|gb|AAS70592.1| ATP-dependent protease [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 860

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
            ++   F+  K     +            + ++LDR  +         EA   +      
Sbjct: 381 RYISDRFLPDKAVDLIDEASSKMRIEIDSMPEELDRANKRIQSLKIEREALKKE------ 434

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           Q  A  +R + L R   E E+    + A+ + EK+   I  L ++  +I + ++ EA  E
Sbjct: 435 QDTASKERLKTLERDLSEQEQNFQTLKARWDLEKSK--IGRLKQIKEEIEKYKNLEAEAE 492

Query: 640 GFGK 643
             G+
Sbjct: 493 RRGE 496


>gi|329925232|ref|ZP_08280175.1| efflux ABC transporter, permease protein [Paenibacillus sp. HGF5]
 gi|328940065|gb|EGG36398.1| efflux ABC transporter, permease protein [Paenibacillus sp. HGF5]
          Length = 1104

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 83/288 (28%), Gaps = 29/288 (10%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                   K A E  +           + E + +      +  + +  L +    + D +
Sbjct: 232 YDDKISRHKEAVELALEAMPQERLAEIRAEGQKKLDEAMGKIEDAKRQLADAEQELTDAR 291

Query: 420 LR-----YYYSQAIRDRLQQLFQKYIT------EHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           L+       Y   +     +L Q          E S      K+N +  +Q     +  Q
Sbjct: 292 LKLNEGEQAYRDGVNKLQAELAQGQAKLDAAEKELSQGKAELKRNQQKLEQGRNQLKTGQ 351

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S L +      P L +   L   +        Q   L      + +       L S    
Sbjct: 352 SQLDQQWALLAPKLAQGQQLAKALQ-------QISGLDPEAIPDEQ----RQELLSAAQS 400

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
               L       +     G  L+Q   + +         +   + + Q  Q+  A     
Sbjct: 401 ADPKLGAAAAGFMDGASDGAALRQAASEFQRGL------DEASLQLDQAQQKLDASEAEL 454

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           +    +  E E+Q+AQ  A  +   T  L +   E   ++   +++ A
Sbjct: 455 KDGQAKLREAERQLAQGEATFKQG-TEELAAARREGEAKLANAKAELA 501


>gi|315045776|ref|XP_003172263.1| hypothetical protein MGYG_04851 [Arthroderma gypseum CBS 118893]
 gi|311342649|gb|EFR01852.1| hypothetical protein MGYG_04851 [Arthroderma gypseum CBS 118893]
          Length = 1465

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 3/121 (2%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                 EQ+  L +E  Q+  E    +L  +  RQ  +        +A +  + +  +Q  
Sbjct: 1030 IRAKEEQEAALRQE--QQAQEAETEQLEDETRRQEEELAREKEAAQARLKALEEQVRQG- 1086

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
             + K+ +   +Q+ E E +  +     +  +         E+  Q+  +  +E+  +  G
Sbjct: 1087 KIKKQEQKRRKQQAEQEAREKEAKLAAQRAELEAAQERERELQRQLESLGDEESSSDDEG 1146

Query: 643  K 643
             
Sbjct: 1147 P 1147


>gi|297275817|ref|XP_002801076.1| PREDICTED: ankyrin repeat domain-containing protein 24-like [Macaca
           mulatta]
          Length = 1009

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/114 (9%), Positives = 39/114 (34%)

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
           ++     +    ++    E +  +         L   ++Q+R     +          ++
Sbjct: 850 RIRGLEEALRQREREVQREALFMKSERHAAEAQLATAEQQLRGLRTEAERARQAQSRAQE 909

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
              +A    K+   LS++   +++ + +  A     +   L   + ++  Q+ +
Sbjct: 910 ALDKAKEKDKKITELSKEVFSLKEALKEQPAALATPEVEALRDQVKDLQQQLQE 963


>gi|293377139|ref|ZP_06623348.1| peptidase, M23 family [Enterococcus faecium PC4.1]
 gi|292644228|gb|EFF62329.1| peptidase, M23 family [Enterococcus faecium PC4.1]
          Length = 499

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 87/245 (35%), Gaps = 18/245 (7%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQK---YITEHSGYGRYWKKNARHRDQKGPSQRL 466
                +K+++    Y   + +++ QL ++    + E +   +   +  +         RL
Sbjct: 38  KIEAIVKNKESAENYLTDLDNKITQLEKEYKKVLVEKNTSEKKLTEINQKITALEERIRL 97

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---- 522
               + +   + + + +  +++  ++N  ++       +   +  +   + + + +    
Sbjct: 98  RNKLIEEQARNAQVNQKSDSIISVMVNAESLSDAVTAAIGMTKLISANNEIMQAQIDDKE 157

Query: 523 ----FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                    E+K    E+  + L E+    +  +L + ++   + ++         +   
Sbjct: 158 NLDELKKEAEKKVTDAEKETRSLEEKENDLIEAKLTQSIKINEISASLATEQSEKAKFEN 217

Query: 579 QQALALYKRFRLL----SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           Q+  A  +R   L      +++E E        K +  + A +I    +   +  + +  
Sbjct: 218 QKQEAEKRREEELKAIAEEKRKEAEAA---AILKAQEAEAASIIFENQKQEAEKRREKEL 274

Query: 635 EAMIE 639
           +A+ E
Sbjct: 275 KAIAE 279


>gi|119601250|gb|EAW80844.1| spectrin repeat containing, nuclear envelope 2, isoform CRA_g [Homo
            sapiens]
          Length = 6825

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 90/279 (32%), Gaps = 18/279 (6%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+         +   L      ++   + +   ++  N  D  + ++++LK C    + +
Sbjct: 1718 PELSELKKQYESVSDLFNTKKSVLQDHFSKLLNDQCKNFNDWFSNIKVNLKECFESSETK 1777

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            K      Q + D L    +    +         K    +         +     + +  +
Sbjct: 1778 KSVEQKLQKLSDFLTLEGRNSKIKQVDSVLKHVKKHLPKAHVKELISWLVGQEFELEKME 1837

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                                +E    L  +    ++ + L  +L +   +++ +   E  
Sbjct: 1838 SICQA-------------RAKELEDSLQQLLRLQDDHRNLRKWLTN---QEEKWKGTEEP 1881

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                E     L ++ ++    A L ++  E    +  +   +A  L  R++ L RQ  EI
Sbjct: 1882 GEKTELFCQALARKREQFESVAQLNNSLKEYGFTEEEEIIMEATCLMDRYQTLLRQLSEI 1941

Query: 599  EKQ--IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            E++  +     +   +    +I  + E+   +  + S E
Sbjct: 1942 EEEDKLLPTEDQSFNDLAHDVIHWIKEIKESLMVLNSSE 1980


>gi|29387335|gb|AAH49366.1| Dystrobrevin, beta [Homo sapiens]
          Length = 609

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +        E AL+ + +             + +   + E + +  +   
Sbjct: 355 PTPTKRLQYSQDIPSHLADEHALIASYVARLQHCARVLDSPSRL---DEEHRLIARYAAR 411

Query: 525 DFVEQKYFL--PEEI-HQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E       P ++       +   +L+ +L+ + R+            E       + 
Sbjct: 412 LAAEAGNVTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEK 471

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 472 AQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEELMKLLKE-EEQKQAAQAT 529


>gi|332365937|gb|EGJ43693.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis SK1059]
          Length = 641

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 17/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSEAGSTLYLGDYDYYLEK 541

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++ + +  D+   +   +  +   ++  ++   L +R   L  Q E+++ QI+
Sbjct: 542 KAELEALRE-ETEQVDSDKPAPANDYQLQ--KENQKEQRRLARRLEQLEAQIEDLDSQIS 598

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
           Q+       +     S L E   QI Q+ +  +EAM+E
Sbjct: 599 QLQEAM---QATNDASELMESQQQIDQLTAAQEEAMLE 633


>gi|134084549|emb|CAK43302.1| unnamed protein product [Aspergillus niger]
          Length = 2296

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 81/288 (28%), Gaps = 21/288 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL---EIHLKNCINHIKD 417
              +        ++    +  + + + +R  E       +        E   ++ +N IKD
Sbjct: 833  DDLMEAIAAGLQEANEANQSVGEQMLERVQEQLDGIKGEMGQHFSASEETSEHLLNAIKD 892

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                    Q +        +                    D +        S+  +G   
Sbjct: 893  GI--AVVRQEVEGYASTAAEASGKHEIMDTVKEGFRLLQADMEKTITETAASNAPRGNPD 950

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                     LL  +      L++    L       NE  ++   +     +QK    +++
Sbjct: 951  TP------ELLDAMEKEFEHLRQTMSSLLIRNNAPNEKDEILDAIRDISEQQKTSKSDDV 1004

Query: 538  HQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               + E         E L +      DA +  A  EA            +    R     
Sbjct: 1005 LAAIRELSEKQAALREQLDEHKTASSDAII--AAVEAAFEQKPSAPSDEILSALREISEK 1062

Query: 593  RQ---KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            +     EEI   I +++ K     +  +I+ + E+  + +   S+E +
Sbjct: 1063 QDNTNSEEILAAIREISEKQNNSNSEEIIAAIREISEKQNDTNSEEIL 1110


>gi|325119475|emb|CBZ55028.1| putative myosin heavy chain [Neospora caninum Liverpool]
          Length = 1410

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 11/144 (7%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
           A+L++  +++  I+    E+ +L   L     + +    +             L K L  
Sbjct: 692 ALLEQVGRQVEQIKRLEKEVAELREQLSDSTAKNETSSADA----------ERLKKLLAE 741

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           +   AG       A + DV    +       R   L +Q +++E+++  +   G AE   
Sbjct: 742 ETGKAGEGDLAWRARLADVEAELEAESRRALRAEELEQQVKDLEEELTVLRRTG-AEMEE 800

Query: 616 ILISILHEVHIQIHQIESQEAMIE 639
            L   +  +   + + ++  A  E
Sbjct: 801 KLKHEIEILRAHMDEQKATFARAE 824



 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 50/156 (32%), Gaps = 21/156 (13%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL--------------PEEIHQRL 541
            + ++     A     + + ++L   L  +  +                     E  + L
Sbjct: 713 ELREQLSDSTAKNETSSADAERLKKLLAEETGKAGEGDLAWRARLADVEAELEAESRRAL 772

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                 + +K L+ ++         T A + +  +   + L  +   +  +      EK+
Sbjct: 773 RAEELEQQVKDLEEELTVLR----RTGAEMEEKLKHEIEILRAHMDEQKAT--FARAEKE 826

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           +       E EK   L   L  ++ ++ +++  E +
Sbjct: 827 LQDQRNAAENEKAD-LARRLACINEELQRLQRAEQL 861


>gi|317124427|ref|YP_004098539.1| bacterial peptide chain release factor 2 (bRF-2) [Intrasporangium
           calvum DSM 43043]
 gi|315588515|gb|ADU47812.1| bacterial peptide chain release factor 2 (bRF-2) [Intrasporangium
           calvum DSM 43043]
          Length = 370

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             + + +L+RQ  +  LW    +A    V     +A A   R   +  +  ++E  +   
Sbjct: 28  LAKQIVELERQASEPNLWDDQDKA--QQVTSALSRANAERDRVLSMDSRINDLETLVEMA 85

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIE 632
           T + + +     +  L ++   + ++E
Sbjct: 86  TEESDQDTMDEALRDLAKIKKDLGELE 112


>gi|258542820|ref|YP_003188253.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633898|dbj|BAH99873.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636957|dbj|BAI02926.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640010|dbj|BAI05972.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643066|dbj|BAI09021.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646121|dbj|BAI12069.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649174|dbj|BAI15115.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652161|dbj|BAI18095.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655218|dbj|BAI21145.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-12]
          Length = 871

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 69/206 (33%), Gaps = 10/206 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R ++           +  +++    K +L     + + AL+       
Sbjct: 320 YRKYIEKDAALARRFQPVFVGEPSVADTISILRGIKEKYELHHGVRITDGALVAAATLSN 379

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S   E        I  ++      E L++ D 
Sbjct: 380 RYITDRFLPDKAIDLIDEAASRLRMQIDSKPEELDELDRRIIQLKIE----REALRKEDD 435

Query: 556 QVRDAGLWSATTEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                 L +   E   ++     +   +          + L  Q ++    +     KG+
Sbjct: 436 TASKDRLEAVEAELADLEEKSNTLSAAWHAEKNRVNTIQKLQEQLDQARSDVEVAQRKGD 495

Query: 611 AEKTAILI-SILHEVHIQIHQIESQE 635
             + + L+  ++  +  QI + +  E
Sbjct: 496 LGRASELMYGVIPNLQAQIAEAQKTE 521


>gi|167754080|ref|ZP_02426207.1| hypothetical protein ALIPUT_02368 [Alistipes putredinis DSM 17216]
 gi|167658705|gb|EDS02835.1| hypothetical protein ALIPUT_02368 [Alistipes putredinis DSM 17216]
          Length = 865

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 69/215 (32%), Gaps = 13/215 (6%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKK-----NARHRDQKGPSQRLMQSSLVKGKLSK 478
           Y     +RL+ + Q+          +  +      A        +  +++ +L +G+L  
Sbjct: 250 YQGEFEERLKAVVQEVTASEGEILLFIDEIHTLVGAGKSSGAMDAANILKPALARGELRT 309

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             +              A+ + ++Q++        +   +   L   +            
Sbjct: 310 IGATTLDEFQKYFEQDKAL-ERRFQKVMVDEPTAEDAISILRGLKDRYENHHQV------ 362

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R+ +      ++   R +    L     +       +   +  ++ +   +L R+  ++
Sbjct: 363 -RIKDEAIVAAVELSQRYITSRFLPDKAIDLIDEAASKLRLEMNSVPEEIDVLDRRVRQL 421

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           E +   +  + + E+   L   + E+  +  ++ +
Sbjct: 422 EIEREAIRRENDKERVEQLTHEIEELGAKRAELRA 456



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 72/217 (33%), Gaps = 17/217 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           FQKY  +     R ++K          +  +++    + +   +  +++ A++  +    
Sbjct: 318 FQKYFEQDKALERRFQKVMVDEPTAEDAISILRGLKDRYENHHQVRIKDEAIVAAVELSQ 377

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             +  ++     I   +    KL   + S   E            +           + R
Sbjct: 378 RYITSRFLPDKAIDLIDEAASKLRLEMNSVPEEIDVLDRRVRQLEIEREA-------IRR 430

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------AQVTAK 608
           +     +   T E  I ++     +  A ++  R + ++ +E + +I        Q   +
Sbjct: 431 ENDKERVEQLTHE--IEELGAKRAELRAKWEGERDVLKKIQENKDRIEHLKIEAQQAERQ 488

Query: 609 GEAEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGKM 644
           G+  + A +    + E   QI  ++ +       G M
Sbjct: 489 GDYGRVAEIRYGKIQEAEKQIAALQDEFRAASASGAM 525


>gi|71361669|ref|NP_001025082.1| citron Rho-interacting kinase [Rattus norvegicus]
          Length = 2055

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/299 (12%), Positives = 96/299 (32%), Gaps = 40/299 (13%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
             +   +   EKL         +  K        ++ + + +    ++   N +KD    
Sbjct: 663 QAKERAERELEKLHNREDSSEGIKKKLVEAEERRHSLENKVKRLETMERRENRLKDDIQT 722

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+               +         +++ + + K       
Sbjct: 723 KSEQIQQMADKILELEEKHREAQVSAQHLEVHLKQKEQHYEEKIKVLDNQIKK------- 775

Query: 481 SLREAALLLTLIN-HPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            L +   L T++  H     E+ + L++    I   +++++ L   +       K     
Sbjct: 776 DLADKESLETMMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANS 835

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALAL 584
            +  +   +   E++ +L +Q       +   EA    + +  +           + L L
Sbjct: 836 SLFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKNRLLEL 895

Query: 585 YKRFRL-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             R R            L RQ  E++  + +  +     +   L +    +  Q+ Q +
Sbjct: 896 ETRLREVSLEHEEQKLELKRQLTELQLSLQERES-----QLTALQAARAALESQLRQAK 949


>gi|118918403|ref|NP_055995.4| nesprin-2 isoform 1 [Homo sapiens]
 gi|116242809|sp|Q8WXH0|SYNE2_HUMAN RecName: Full=Nesprin-2; AltName: Full=Nuclear envelope spectrin
            repeat protein 2; AltName: Full=Nucleus and actin
            connecting element protein; Short=Protein NUANCE;
            AltName: Full=Synaptic nuclear envelope protein 2;
            Short=Syne-2
          Length = 6885

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 87/279 (31%), Gaps = 18/279 (6%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+         +   L      ++   + +   ++  N  D  + ++++LK C    + +
Sbjct: 1809 PELSELKKQYESVSDLFNTKKSVLQDHFSKLLNDQCKNFNDWFSNIKVNLKECFESSETK 1868

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            K      Q + D L    +    +         K    +         +     + +  +
Sbjct: 1869 KSVEQKLQKLSDFLTLEGRNSKIKQVDSVLKHVKKHLPKAHVKELISWLVGQEFELEKME 1928

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                                +E    L  +    ++ + L  +L +   + K        
Sbjct: 1929 SICQA-------------RAKELEDSLQQLLRLQDDHRNLRKWLTNQEEKWKGMEEPGEK 1975

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
              L       L ++ ++    A L ++  E    +  +   +A  L  R++ L RQ  EI
Sbjct: 1976 TEL---FCQALARKREQFESVAQLNNSLKEYGFTEEEEIIMEATCLMDRYQTLLRQLSEI 2032

Query: 599  EKQ--IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            E++  +     +   +    +I  + E+   +  + S E
Sbjct: 2033 EEEDKLLPTEDQSFNDLAHDVIHWIKEIKESLMVLNSSE 2071


>gi|94970627|ref|YP_592675.1| periplasmic sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552677|gb|ABF42601.1| periplasmic sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 766

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE-IEKQIAQVTAKGEAEKTA--I 616
           + L     +   + +    Q  +A  +R   L R+ EE +E+Q+A  T++     +    
Sbjct: 314 SSLRMVVVQQRELRIAADLQAEIAERRRAEQLLRENEEHLEEQVANRTSELSEANSQLRS 373

Query: 617 LISILHEVHIQIHQIESQEAMIEGFGKMSG 646
            I     +  Q+ Q +  EA+    G +SG
Sbjct: 374 EIIERQRLEEQLRQTQKMEAI----GTLSG 399


>gi|89897379|ref|YP_520866.1| hypothetical protein DSY4633 [Desulfitobacterium hafniense Y51]
 gi|89336827|dbj|BAE86422.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 477

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 48/178 (26%), Gaps = 20/178 (11%)

Query: 6   DFIKDLLIHIPISNLIG----QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            F  +        +L+     Q     R                HD    S     S+ F
Sbjct: 5   HFTDEQKQRANSVDLVDFLQRQGEQLVRSGREWRWKR-------HD----SVTVRGSQWF 53

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESV-QRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            +  S    G  + F+      SF E+V   L   +GV        +    K    L   
Sbjct: 54  RH--SRKEGGHSIDFVQQFYDMSFPEAVTLLLGGESGVEWNQTSKSVPPPRKSFA-LPEA 110

Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
            +     F + +K    D+ +  +     +     +     +       +  H  ++G
Sbjct: 111 NQDMRRVFAYLIKQRFIDREVLTHFAHEKLIYEDKKYHNAVFVGLDENGVPRHAHKRG 168


>gi|159117827|ref|XP_001709133.1| Coiled-coil protein [Giardia lamblia ATCC 50803]
 gi|157437248|gb|EDO81459.1| Coiled-coil protein [Giardia lamblia ATCC 50803]
          Length = 597

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 43/130 (33%), Gaps = 10/130 (7%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRL---------CERGFGELLKQLDRQVRDAGLWS 564
           E +KL              L   +   L             +  L ++L    +   + +
Sbjct: 318 EFRKLHQADIESHQSTLTALSNRLADALLQLKRLETETTSKYKALEQELADLHKALTMET 377

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             ++A      +   +  AL +R + LS + E++   + +      A +   L   L E+
Sbjct: 378 TESDAANQRYSKLQGEQEALLQRNKKLSTELEDLRYALQESGKTSSAAE-EALRKRLREL 436

Query: 625 HIQIHQIESQ 634
                 +E+Q
Sbjct: 437 QRDNELLENQ 446


>gi|301756028|ref|XP_002913874.1| PREDICTED: dystrobrevin beta-like [Ailuropoda melanoleuca]
          Length = 698

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 57/180 (31%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +    P   E AL+ + +             + +   + E + +  +   
Sbjct: 355 PTPTKRLQYSQDIPSPLADEHALIASYVARLQHCARVLDSPSRL---DEEHRLIARYAAR 411

Query: 525 DFVEQKYFL--PEEI-HQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E       P ++       +   +L+ +L+ + R+            E       + 
Sbjct: 412 LAAEAGNMTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEK 471

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 472 AQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEGLMKLLKE-EEQKQAAQAT 529


>gi|227823348|ref|YP_002827320.1| hypothetical protein NGR_c28210 [Sinorhizobium fredii NGR234]
 gi|227342349|gb|ACP26567.1| flagellar motor protein [Sinorhizobium fredii NGR234]
          Length = 343

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 13/138 (9%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
             L + L +       F+  +        G  E+L +L+ Q+ +     A  ++   D+ 
Sbjct: 21  DALSTLLMAIMFLLSVFVTAQFLMGREITGKDEVLNRLNSQINELTQLLALEKSGKQDLE 80

Query: 576 QGYQQALALYKRFRLLSRQKEEIE-----------KQIAQVTAKGEAEK--TAILISILH 622
                  A   +      + + +            ++I ++ ++ E E+  ++  +S + 
Sbjct: 81  DSLANLQASLSQSEGERSRLQSLLDQGAGSADAASQKIGRLGSELENERQISSRAMSQIE 140

Query: 623 EVHIQIHQIESQEAMIEG 640
            ++ QI  + SQ A IEG
Sbjct: 141 LLNQQIAALRSQIAAIEG 158


>gi|255545966|ref|XP_002514043.1| Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
 gi|223547129|gb|EEF48626.1| Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
          Length = 1290

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 50/131 (38%), Gaps = 10/131 (7%)

Query: 512 NNELQKLWSFLFSDFVEQK---YFLPEEIHQRLC------ERGFGELLKQLDRQVRDAGL 562
           + EL++L   L     E K         + Q         E+    L K+++    +   
Sbjct: 566 DRELKELDKRLEQKEAEMKRFTSVDTSVLKQHYEKKVQELEQEKRALQKEIEDLRCNLSN 625

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
            S+ ++     +++ Y Q L + +      ++K++ + Q+ +   K + E    L   + 
Sbjct: 626 ISSISDDGAQKLKENYLQKLTVLESQVAELKKKQDAQAQLLRQKQKSD-EAARRLHEEIQ 684

Query: 623 EVHIQIHQIES 633
           ++     Q++ 
Sbjct: 685 KIKTHKVQLQQ 695


>gi|213692886|ref|YP_002323472.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524347|gb|ACJ53094.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320459060|dbj|BAJ69681.1| peptide chain release factor [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 374

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E I + L        +K L+ Q    GLW     A    +      A +  KR    S++
Sbjct: 18  ESIAKALDINRLKADIKDLETQAAAPGLWDDPENA--QKITSRLSAAESQLKRLNSASQR 75

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +++E  +     +G+ +      S + E+   + Q+E Q  +++G
Sbjct: 76  IDDVETLVELGHEEGDQDSLDEAQSEIGEIQKDLDQMEIQT-LLDG 120


>gi|194911950|ref|XP_001982406.1| GG12754 [Drosophila erecta]
 gi|190648082|gb|EDV45375.1| GG12754 [Drosophila erecta]
          Length = 1105

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 77/245 (31%), Gaps = 23/245 (9%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            E   ++T +E       L +    + D +      + + +    LFQ          R 
Sbjct: 406 MEETHYSTNEELQATLQELADLQTQLTDTQTEN---ERLAEEKDVLFQSLC-------RQ 455

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
            +K    R Q    Q L+     +       S RE  LL        +++   +E   + 
Sbjct: 456 TEKLNESRTQISTLQELIIRDTKQPAPEVSVSEREQKLL-------DLIKTSQEEREAVL 508

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               EL    + L       +    +E+ ++        L  QLD    +     A    
Sbjct: 509 LKQEELGSELAELKQAREAGQ----QELQRQRERIAL--LDSQLDAANAERRQGEAQFSQ 562

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            + ++ Q   +   L         + EE+E  +++      ++   +       +  ++ 
Sbjct: 563 AMEEISQRAIEISRLSTLLENARSKIEELEADLSRGDKTDLSDVLDVARKEKDALEERVA 622

Query: 630 QIESQ 634
           +++ Q
Sbjct: 623 ELQDQ 627


>gi|217976605|ref|YP_002360752.1| replicative DNA helicase [Methylocella silvestris BL2]
 gi|217501981|gb|ACK49390.1| replicative DNA helicase [Methylocella silvestris BL2]
          Length = 498

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 48/170 (28%), Gaps = 10/170 (5%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P      +     +L+      E ALL  ++ +          L    +     ++++ 
Sbjct: 8   RPGAARQSAETPTYRLAPHNIEAEQALLGAVLVNNDAFDRVSDFLKPEHFSEEVHRRIYD 67

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFG-----ELLKQLDRQVRDAGL-----WSATTEAN 570
                    K   P  +   L E   G     + L +L  +            +    A 
Sbjct: 68  IASQLIRAGKIASPITLKTFLGEHDLGGVTAPQYLARLAAEATTIINAEDYGRTIHDLAV 127

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
             D+    +  +       + +  +E+IE+   ++ +  E  +       
Sbjct: 128 RRDLILIGEDIVNSAYDAPVAASPREQIEEAERKLYSVAELGRYEGGFQR 177


>gi|220920258|ref|YP_002495559.1| ABC-1 domain-containing protein [Methylobacterium nodulans ORS
           2060]
 gi|219944864|gb|ACL55256.1| ABC-1 domain protein [Methylobacterium nodulans ORS 2060]
          Length = 453

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 54/173 (31%), Gaps = 6/173 (3%)

Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
            + +   +  + D  L   Y+Q +  +LQ                 +  A  + + G S 
Sbjct: 60  IMKVAQLLATVPD-LLPPEYAQEL-QKLQSEAPPMGAAFVKRRMAAELGADWQSRFG-SF 116

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-- 522
            L  S+        + + R+ A L   + +P +      +L  + +     +++   +  
Sbjct: 117 DLKPSAAASLGQVHRAATRDGAPLACKLQYPDMQSAVEADLKQLEFAFALHRRMRIAIDT 176

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
                E    + EE+   L E     L  ++ R +    +           + 
Sbjct: 177 REIAKEIGDRVREEL-DYLREAKHAALYSEVLRDIATVRVPGVHPGLTTKRLL 228


>gi|157738613|ref|NP_001099033.1| coiled-coil alpha-helical rod protein 1 isoform 2 [Homo sapiens]
          Length = 835

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 620 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 679

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 680 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 739


>gi|126334598|ref|XP_001365978.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform 1
            [Monodelphis domestica]
          Length = 1979

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 884  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 943

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + M+  ++        
Sbjct: 944  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKMEDDILVMDDQNNK 1003

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 1004 LTKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKM 1063

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1064 KRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDDEIA---QKNNALKKI 1120

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1121 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1161


>gi|118918407|ref|NP_878918.2| nesprin-2 isoform 5 [Homo sapiens]
          Length = 6907

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 87/279 (31%), Gaps = 18/279 (6%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+         +   L      ++   + +   ++  N  D  + ++++LK C    + +
Sbjct: 1809 PELSELKKQYESVSDLFNTKKSVLQDHFSKLLNDQCKNFNDWFSNIKVNLKECFESSETK 1868

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            K      Q + D L    +    +         K    +         +     + +  +
Sbjct: 1869 KSVEQKLQKLSDFLTLEGRNSKIKQVDSVLKHVKKHLPKAHVKELISWLVGQEFELEKME 1928

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                                +E    L  +    ++ + L  +L +   + K        
Sbjct: 1929 SICQA-------------RAKELEDSLQQLLRLQDDHRNLRKWLTNQEEKWKGMEEPGEK 1975

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
              L       L ++ ++    A L ++  E    +  +   +A  L  R++ L RQ  EI
Sbjct: 1976 TEL---FCQALARKREQFESVAQLNNSLKEYGFTEEEEIIMEATCLMDRYQTLLRQLSEI 2032

Query: 599  EKQ--IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            E++  +     +   +    +I  + E+   +  + S E
Sbjct: 2033 EEEDKLLPTEDQSFNDLAHDVIHWIKEIKESLMVLNSSE 2071


>gi|90020707|ref|YP_526534.1| primary replicative DNA helicase [Saccharophagus degradans 2-40]
 gi|89950307|gb|ABD80322.1| primary replicative DNA helicase [Saccharophagus degradans 2-40]
          Length = 488

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 45/167 (26%), Gaps = 6/167 (3%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
           P   +   S     +       E ++L  L+   +      + L++  +     +K++  
Sbjct: 26  PDTGVESESASSHSILPHSVEAEQSVLGGLLQEASNFDSVSEILSEKDFFKAPHRKIFRA 85

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +      ++      + + L          +L        L    TE         Y + 
Sbjct: 86  MAQLMEREQPIDVITVSEFLSAE------DELVGAGGLDYLSDLATEVPSSANVVAYAKI 139

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +      R L     EI K           E   +    + E+  + 
Sbjct: 140 VRERATLRQLISAATEISKASYNPGGLASDELLQLAEKRVLEISEER 186


>gi|24417711|gb|AAN60443.1| nesprin-2 [Homo sapiens]
          Length = 6884

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 87/279 (31%), Gaps = 18/279 (6%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+         +   L      ++   + +   ++  N  D  + ++++LK C    + +
Sbjct: 1808 PELSELKKQYESVSDLFNTKKSVLQDHFSKLLNDQCKNFNDWFSNIKVNLKECFESSETK 1867

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            K      Q + D L    +    +         K    +         +     + +  +
Sbjct: 1868 KSVEQKLQKLSDFLTLEGRNSKIKQVDSVLKHVKKHLPKAHVKELISWLVGQEFELEKME 1927

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                                +E    L  +    ++ + L  +L +   + K        
Sbjct: 1928 SICQA-------------RAKELEDSLQQLLRLQDDHRNLRKWLTNQEEKWKGMEEPGEK 1974

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
              L       L ++ ++    A L ++  E    +  +   +A  L  R++ L RQ  EI
Sbjct: 1975 TEL---FCQALARKREQFESVAQLNNSLKEYGFTEEEEIIMEATCLMDRYQTLLRQLSEI 2031

Query: 599  EKQ--IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            E++  +     +   +    +I  + E+   +  + S E
Sbjct: 2032 EEEDKLLPTEDQSFNDLAHDVIHWIKEIKESLMVLNSSE 2070


>gi|332242939|ref|XP_003270638.1| PREDICTED: dystrobrevin beta isoform 1 [Nomascus leucogenys]
          Length = 627

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +        E AL+ + +             + +   + E + +  +   
Sbjct: 355 PTPTKRLQYSQDIPSHLADEHALIASYVARLQHCARVLDSPSRL---DEEHRLIARYAAR 411

Query: 525 DFVEQKYFL--PEEI-HQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E       P ++       +   +L+ +L+ + R+            E       + 
Sbjct: 412 LAAEAGNVTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEK 471

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 472 AQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEELMKLLKE-EEQKQAAQAT 529


>gi|33341236|gb|AAQ15171.1|AF357236_1 polytrophin [Homo sapiens]
          Length = 6825

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 90/279 (32%), Gaps = 18/279 (6%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+         +   L      ++   + +   ++  N  D  + ++++LK C    + +
Sbjct: 1809 PELSELKKQYESVSDLFNTKKSVLQDHFSKLLNDQCKNFNDWFSNIKVNLKECFESSETK 1868

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            K      Q + D L    +    +         K    +         +     + +  +
Sbjct: 1869 KSVEQKLQKLSDFLTLEGRNSKIKQVDSVLKHVKKHLPKAHVKELISWLVGQEFELEKME 1928

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                                +E    L  +    ++ + L  +L +   +++ +   E  
Sbjct: 1929 SICQA-------------RAKELEDSLQQLLRLQDDHRNLRKWLTN---QEEKWKGTEEP 1972

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                E     L ++ ++    A L ++  E    +  +   +A  L  R++ L RQ  EI
Sbjct: 1973 GEKTELFCQALARKREQFESVAQLNNSLKEYGFTEEEEIIMEATCLMDRYQTLLRQLSEI 2032

Query: 599  EKQ--IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            E++  +     +   +    +I  + E+   +  + S E
Sbjct: 2033 EEEDKLLPTEDQSFNDLAHDVIHWIKEIKESLMVLNSSE 2071


>gi|260428761|ref|ZP_05782738.1| chaperone protein ClpB [Citreicella sp. SE45]
 gi|260419384|gb|EEX12637.1| chaperone protein ClpB [Citreicella sp. SE45]
          Length = 864

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/209 (11%), Positives = 70/209 (33%), Gaps = 16/209 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++K++ +     R ++           +  +++    K +L     + ++AL+    ++H
Sbjct: 319 YRKHVEKDPALARRFQPVMVQEPTVEDTISILRGIKEKYELHHGVRISDSALVAAATLSH 378

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +    +L   + S   E        +  ++             
Sbjct: 379 RYITDRFLPD-KAIDLMDEAASRLRMEVDSKPEELDQLDRNILQMQIEVEALK------L 431

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                +       E  + D+ +   +  A ++  R       ++++Q+ ++ A+ E  K 
Sbjct: 432 EDDAASKDRLEKLEKELADLEEKSAEMTAQWQAERDKLASARDLKEQLDRLRAELEIAKR 491

Query: 615 AILIS---ILH-----EVHIQIHQIESQE 635
               +    L      E+  ++ + E+ E
Sbjct: 492 EGNFAKAGELQYGKIPEIEKKLAEAEAAE 520


>gi|257885980|ref|ZP_05665633.1| predicted protein [Enterococcus faecium 1,231,501]
 gi|257821836|gb|EEV48966.1| predicted protein [Enterococcus faecium 1,231,501]
          Length = 499

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 87/245 (35%), Gaps = 18/245 (7%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQK---YITEHSGYGRYWKKNARHRDQKGPSQRL 466
                +K+++    Y   + +++ QL ++    + E +   +   +  +         RL
Sbjct: 38  KIEAIVKNKESAENYLTDLDNKITQLEKEYKKVLVEKNTSEKKLTEINQKITALEERIRL 97

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---- 522
               + +   + + + +  +++  ++N  ++       +   +  +   + + + +    
Sbjct: 98  RNKLIEEQARNAQVNQKSDSIISVMVNAESLSDAVTAAIGMTKLISASNEIMQAQIDDKE 157

Query: 523 ----FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                    E+K    E+  + L E+    +  +L + ++   + ++         +   
Sbjct: 158 NLDELKKEAEKKVTDAEKETRSLEEKENDLIEAKLTQSIKINEISASLATEQSEKAKFEN 217

Query: 579 QQALALYKRFRLL----SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           Q+  A  +R   L      +++E E        K +  + A +I    +   +  + +  
Sbjct: 218 QKQEAEKRREEELKAIAEEKRKEAEAA---AILKAQEAEAASIIFENQKQEAEKRREKEL 274

Query: 635 EAMIE 639
           +A+ E
Sbjct: 275 KAIAE 279


>gi|114576496|ref|XP_515336.2| PREDICTED: dystrobrevin beta isoform 7 [Pan troglodytes]
          Length = 627

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +        E AL+ + +             + +   + E + +  +   
Sbjct: 355 PTPTKRLQYSQDIPSHLADEHALIASYVARLQHCARVLDSPSRL---DEEHRLIARYAAR 411

Query: 525 DFVEQKYFL--PEEI-HQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E       P ++       +   +L+ +L+ + R+            E       + 
Sbjct: 412 LAAEAGNVTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEK 471

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 472 AQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEELMKLLKE-EEQKQAAQAT 529


>gi|3133087|emb|CAA75733.1| dystrobrevin B DTN-B2 [Homo sapiens]
 gi|119621126|gb|EAX00721.1| dystrobrevin, beta, isoform CRA_c [Homo sapiens]
          Length = 558

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 53/190 (27%), Gaps = 31/190 (16%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +        E AL+ + +             + +   + E + +  +   
Sbjct: 355 PTPTKRLQYSQDIPSHLADEHALIASYVARLQHCARVLDSPSRL---DEEHRLIARYAAR 411

Query: 525 DFVEQKYFLP---------------EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
              E                      ++   L  +   E+L+++ R   +    S  T  
Sbjct: 412 LAAEAGNVTRPPTDLSFNFDANKQQRQLIAELENKN-REILQEIQRLRLEHEQASQPTPE 470

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                     +   L +R   L ++   ++            E    L+  L E+   + 
Sbjct: 471 KAQQNPTLLAELRLLRQRKDELEQRMSALQ------------ESRRELMVQLEELMKLLK 518

Query: 630 QIESQEAMIE 639
           + E ++A+ E
Sbjct: 519 EEEQKQAVSE 528


>gi|118389638|ref|XP_001027902.1| hypothetical protein TTHERM_00497130 [Tetrahymena thermophila]
 gi|89309672|gb|EAS07660.1| hypothetical protein TTHERM_00497130 [Tetrahymena thermophila
           SB210]
          Length = 589

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 60/163 (36%), Gaps = 8/163 (4%)

Query: 490 TLINHPAILQEQYQELADIRYDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           TL  +  I+ +  + L D   +   EL  + + +     E    L +     L +    +
Sbjct: 40  TLKRNFEIIIKYLRMLKDGHLNTQNELDDIRAKMEKQQQENLELLKKNQQNDLIKNELQQ 99

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA----- 603
           +   +    ++        +    D ++  ++   L +    L      +++++      
Sbjct: 100 MKDAIKENEKNLASVQNDNQKLKEDNQKAKEENNQLRENIEKLKETLGFLKEKLEKFGNT 159

Query: 604 -QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
            Q+  K + +    LI  L E+  Q++ +  +  ++E  G +S
Sbjct: 160 EQLEHKFDQKLEQKLIM-LKELQRQMNDLNDRLKLLENKGNLS 201


>gi|321477363|gb|EFX88322.1| hypothetical protein DAPPUDRAFT_305656 [Daphnia pulex]
          Length = 577

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 85/270 (31%), Gaps = 12/270 (4%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                +  + I +S+       K                  +  +  +   ++  L    
Sbjct: 139 KQEIKSINQEIRQSMQHAKQAQKEAKNAEQQLKSQIAVVQSVEQRVSVLRKENMTLADQL 198

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                +      +  +        Y  K    + Q     +  QS  V+ K+      +E
Sbjct: 199 LDKDAEL--STLKSKVEAIHVEQEYQTKLEHMQAQLETEVKKRQSLEVETKVQFNQLEKE 256

Query: 485 AALLLTLIN-HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
             +L+     +   LQ   +EL       NE +     +     + K  L ++I +    
Sbjct: 257 RCILMGESQQYQHQLQTVKEELESTHQSFNEYKLRAQRIL----QDKDRLLQDIKEHKTV 312

Query: 544 RGF----GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             F      L+ +LD+  ++  L    T  +   ++Q   +   L  R+    RQ  E+ 
Sbjct: 313 ESFQLPNELLMAELDQLQQERDLLREETAQSNSQLQQCRMEIAHLEARYEEEIRQIRELN 372

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            Q A+     E  K  ++ + L ++  ++ 
Sbjct: 373 NQ-AETRLLEERSKKELIENELRQLDEELR 401


>gi|291389910|ref|XP_002711459.1| PREDICTED: myosin heavy chain [Oryctolagus cuniculus]
          Length = 1962

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 87/265 (32%), Gaps = 28/265 (10%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EKL ++     +     E E        ++ ELE    +    +++++ R  + QA + 
Sbjct: 880  AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKK 939

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++QQ  Q+   +        +K    +       + ++   +  +       +E  LL  
Sbjct: 940  KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEEQIIMEDQNCKLAKEKKLLE- 998

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +                      E    +L 
Sbjct: 999  -----DRIAEFTTNLMEEEEKSKSLAKLKNK--------------------HEAMITDLE 1033

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L R+ +       T      D      Q   L  +   L  Q  + E+++    A+ E
Sbjct: 1034 ERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVE 1093

Query: 611  AEKTAILIS--ILHEVHIQIHQIES 633
             E     ++   + E+  QI +++ 
Sbjct: 1094 EEAAQKNMALKKIRELESQISELQE 1118


>gi|296082057|emb|CBI21062.3| unnamed protein product [Vitis vinifera]
          Length = 1683

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 65/161 (40%), Gaps = 14/161 (8%)

Query: 477  SKKPSLREAALLLTLI-NHPAILQEQYQELADI-RYDNNELQKLWSFLFSDFVEQKYFLP 534
            S +    E  +L+ L+     I++     + ++    N +   LW  L +          
Sbjct: 1320 SSREIDLELEILVILVCEEQEIVRPVLSMMREVAELANVDRAALWHQLCT--------SE 1371

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSR 593
            +EI +   ER     +  L ++        + +EA    ++   + +A    +  + LS 
Sbjct: 1372 DEIIRMREER--KAEISNLVKEKAIISQRLSESEATSNRLKSEMRAEADRFAREKKELSE 1429

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            Q +E+E Q+  + ++ + E+   L S    +  ++H  E+Q
Sbjct: 1430 QIQEVESQLEWLRSERD-EEITKLTSEKKVLQDRLHDAEAQ 1469


>gi|60649448|gb|AAH91650.1| LOC398149 protein [Xenopus laevis]
          Length = 1289

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 90/278 (32%), Gaps = 18/278 (6%)

Query: 369  TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
             A   L   SL   ++    + E +  +   +        K  ++   D+  R      +
Sbjct: 895  EAQRSLKRLSLEYEELQECYQEEMKQKDHLKKTKNELEEQKRLLDKSMDKLTRE--LDNM 952

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             +  +   Q   T+   Y    +K      ++   +              +  +++   L
Sbjct: 953  SNESRGSLQLLQTQLEEYREKSRKEIGEAQKQAKEKTAEAERHQFNSSRMQEEVQK---L 1009

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
               +    + +E  +   D +  +  LQ L   + S    Q     +    ++ E     
Sbjct: 1010 KLALQELQVEKETVEL--DKQMISQRLQSLEQDIESKKRVQDDRSRQV---KVLEDKLKR 1064

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-------FRLLSRQKEEIEKQ 601
            +  +LD +     L +     +   + Q   +      R          L RQ +E++ +
Sbjct: 1065 MEAELDEEKNTVELLTDRVNRSRDQMEQQRAELNQERSRGQDLECDKISLERQNKELKNR 1124

Query: 602  IAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMI 638
            +A +  + +     + L + L E+  ++   E ++A +
Sbjct: 1125 LASMEGQQKPSVNVSHLEAKLQEIQERLQLEEREKATL 1162


>gi|268566891|ref|XP_002639840.1| C. briggsae CBR-ANC-1 protein [Caenorhabditis briggsae]
 gi|187029690|emb|CAP31235.1| CBR-ANC-1 protein [Caenorhabditis briggsae AF16]
          Length = 3414

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/254 (9%), Positives = 81/254 (31%), Gaps = 15/254 (5%)

Query: 399  DERAELEIHLKNCINHIKDQKLRYYYSQ---AIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
             ++      +   ++ I D   +    +    I+ +L Q  +    +             
Sbjct: 973  TKQDRTMRKIHAILDTIDDPVQKPAIIESLDKIKSQLDQARENINRQIDNLNYNQTPVVA 1032

Query: 456  HRDQKGPSQRLMQSSLVKGKLSKKPSL--REAAL-LLTLINHPAILQEQYQELADIRYDN 512
             ++        ++ ++ +   +    L   E  L    ++ +   ++ Q   +    + N
Sbjct: 1033 PKESSKTPLNEIEDAIKQASTAMSVDLCNTEKLLNAKYILAN---VKPQVDAVEADIWSN 1089

Query: 513  NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
             E   +   +   +      + ++I   +         + L +Q++D          +  
Sbjct: 1090 PETIDIVQPILQQYATLIETIDKKISDEIGVPINDTSRQDLVQQLQDVIAECEDVVIDCE 1149

Query: 573  DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHE----VHI 626
            D+ +  +    L     LL +  + +EK   + +       +  + +          +  
Sbjct: 1150 DIGKLEESKTKLENAKPLLEQIVQNVEKLTREQSPDASDAIDALSNVHQQYDATIVSIED 1209

Query: 627  QIHQIESQEAMIEG 640
            +I ++++ E + EG
Sbjct: 1210 KIGELQNPEPVEEG 1223


>gi|327389482|gb|EGE87827.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA04375]
          Length = 1179

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E  +E A +R D   L+ L   L       +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAEEEASLRSDEVSLKNLQDELARLTERLEAIKSQGEQARIQEQGLSLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  I  + +G  QA      +R   ++  K+ +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEEIDRLSEGDWQADKEKCQERLAAIASDKQNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 833


>gi|293568551|ref|ZP_06679870.1| peptidase, M23/M37 family protein [Enterococcus faecium E1071]
 gi|291588725|gb|EFF20554.1| peptidase, M23/M37 family protein [Enterococcus faecium E1071]
 gi|309386107|gb|ADO66983.1| peptidase M23/M37 family protein [Enterococcus faecium]
          Length = 499

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 87/245 (35%), Gaps = 18/245 (7%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQK---YITEHSGYGRYWKKNARHRDQKGPSQRL 466
                +K+++    Y   + +++ QL ++    + E +   +   +  +         RL
Sbjct: 38  KIEAIVKNKESAENYLTDLDNKITQLEKEYKKVLVEKNTSEKKLTEINQKITALEERIRL 97

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---- 522
               + +   + + + +  +++  ++N  ++       +   +  +   + + + +    
Sbjct: 98  RNKLIEEQARNAQVNQKSDSIISVMVNAESLSDAVTAAIGMTKLISASNEIMQAQIDDKE 157

Query: 523 ----FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                    E+K    E+  + L E+    +  +L + ++   + ++         +   
Sbjct: 158 NLDELKKEAEKKVTDAEKETRSLEEKENDLIEAKLTQSIKINEISASLATEQSEKAKFEN 217

Query: 579 QQALALYKRFRLL----SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           Q+  A  +R   L      +++E E        K +  + A +I    +   +  + +  
Sbjct: 218 QKQEAEKRREEELKAIAEEKRKEAEAA---AILKAQEAEAASIIFENQKQEAEKRREKEL 274

Query: 635 EAMIE 639
           +A+ E
Sbjct: 275 KAIAE 279


>gi|2104553|gb|AAC31665.1| Myosin heavy chain (MHY11) (5'partial) [Homo sapiens]
          Length = 1857

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 94/265 (35%), Gaps = 10/265 (3%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     +     E E        ++ ELE  L      +++++ R    QA R ++ Q  
Sbjct: 778  QEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQM 837

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                 +        +K    +       + ++  ++          +E  LL   I+   
Sbjct: 838  LDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKLSKERKLLEERISDLT 897

Query: 497  I-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEIHQRLCER--GFGELLK 551
              L E+ ++  ++    N+ + + S L       E+     E++ ++L      F E + 
Sbjct: 898  TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIA 957

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
             L  Q+ +  +  A  E  +          +A   +     ++  E+E  I+ +    ++
Sbjct: 958  DLQAQIAELKMQLAKKEEELQAALARLDDEIA---QKNNALKKIRELEGHISDLQEDLDS 1014

Query: 612  EKTAILISILH--EVHIQIHQIESQ 634
            E+ A   +     ++  ++  ++++
Sbjct: 1015 ERAARNKAEKQKRDLGEELEALKTE 1039


>gi|3915778|sp|P10587|MYH11_CHICK RecName: Full=Myosin-11; AltName: Full=Myosin heavy chain 11;
            AltName: Full=Myosin heavy chain, gizzard smooth muscle
          Length = 1979

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 84/277 (30%), Gaps = 23/277 (8%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     +     E E        ++ ELE  L      I++++ R    QA + ++QQ  
Sbjct: 899  QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQM 958

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                 +        +K    +       + M+  ++  +       +E  LL        
Sbjct: 959  LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE------E 1012

Query: 497  ILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKYFLPEEIHQRLCER--G 545
             + +    LA+       L KL      + S+        E+     E+I ++L      
Sbjct: 1013 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1072

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----ALYKRFRLLSRQKEEIEKQ 601
              E + +L  Q+ +     A  E  +       +          K+ R L     ++++ 
Sbjct: 1073 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1132

Query: 602  IAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQEA 636
            +    A     +     L   L  +  ++       A
Sbjct: 1133 LESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTA 1169


>gi|186687155|ref|YP_001870298.1| DnaB domain-containing protein [Nostoc punctiforme PCC 73102]
 gi|186469458|gb|ACC85257.1| DnaB domain protein helicase, N-terminal domain protein [Nostoc
           punctiforme PCC 73102]
          Length = 449

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 39/124 (31%), Gaps = 3/124 (2%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            L  +    E A+L  ++  P  +      L+   +  N  + ++          +    
Sbjct: 19  NLPPQNIEAEEAILGGIMLDPEAMTRVSDRLSIEAFYINAHKDIYQAAVRLHATYQPTDL 78

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L +     LL ++  + + A L   T  A  +D            ++   +  +
Sbjct: 79  LSVTAWLADH---NLLNRIGGRNKLATLVDRTVSAVNIDALADLVMEKYRRRQLIKVGNE 135

Query: 595 KEEI 598
             ++
Sbjct: 136 IVQL 139


>gi|323140083|ref|ZP_08075086.1| hypothetical protein Met49242DRAFT_4474 [Methylocystis sp. ATCC
           49242]
 gi|322394662|gb|EFX97260.1| hypothetical protein Met49242DRAFT_4474 [Methylocystis sp. ATCC
           49242]
          Length = 104

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 11/78 (14%)

Query: 29  RRKTNAVKGDYWACCPFHDEKT-PSFHCNDSKGFYYC----FSCH-VKGDHLSFLSALLG 82
                AV  ++ A  P   +++  SF  N     Y C    F+     GD +S ++ + G
Sbjct: 27  PSGK-AVHKEWVALNPRRRDRSLGSFKVN----RYNCKWCDFATGDKGGDPVSLVAYVEG 81

Query: 83  CSFIESVQRLAAIAGVPL 100
            S  ++ + LA + G  +
Sbjct: 82  VSQGDAARLLAQMLGTDM 99


>gi|225430328|ref|XP_002282789.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2200

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 65/161 (40%), Gaps = 14/161 (8%)

Query: 477  SKKPSLREAALLLTLI-NHPAILQEQYQELADI-RYDNNELQKLWSFLFSDFVEQKYFLP 534
            S +    E  +L+ L+     I++     + ++    N +   LW  L +          
Sbjct: 1310 SSREIDLELEILVILVCEEQEIVRPVLSMMREVAELANVDRAALWHQLCT--------SE 1361

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSR 593
            +EI +   ER     +  L ++        + +EA    ++   + +A    +  + LS 
Sbjct: 1362 DEIIRMREER--KAEISNLVKEKAIISQRLSESEATSNRLKSEMRAEADRFAREKKELSE 1419

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            Q +E+E Q+  + ++ + E+   L S    +  ++H  E+Q
Sbjct: 1420 QIQEVESQLEWLRSERD-EEITKLTSEKKVLQDRLHDAEAQ 1459


>gi|116047945|gb|ABJ53198.1| myosin XI-F [Nicotiana benthamiana]
          Length = 1569

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 76/273 (27%), Gaps = 13/273 (4%)

Query: 378  SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
            +L    + +++    +      E+ + E        H++    R  Y +     L     
Sbjct: 756  ALRRATIHFQKLWRAKLARVLYEQMKREAASIRIQKHVRSHSARKSYKELQAAALVIQTG 815

Query: 438  KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL----------REAAL 487
                      R  ++N   +  +   +     S  K K     SL          +E   
Sbjct: 816  MRAMAARNEYRQRRRNKAAKIVQTQWRGFHAFSTYKQKKKASLSLQCLWRGRLARKELRK 875

Query: 488  LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG-- 545
            L         L+E   +L     +          L  D  E K     ++ + L E    
Sbjct: 876  LRMAARDTGALKEAKDKLEKRVEELTWRLDFEKHLRIDLEEAKGQEISKLQKALQEMQMQ 935

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQ 604
              E    +  +   A +        I +V +     +  L +    L  +  E++K++  
Sbjct: 936  LDEAHDAIIHEKEAAKIAIEQAPPVIKEVPEMDNTKVEKLTEENNKLEEEIRELKKRVED 995

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
                    +             Q+   E QE++
Sbjct: 996  FEQSYNEVEKECQARRREAEETQLRVSELQESI 1028


>gi|145503414|ref|XP_001437683.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404836|emb|CAK70286.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1036

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 79/216 (36%), Gaps = 12/216 (5%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           ++++LQ L  + I  ++       +   + ++K    +L+ S L++    +K   +   +
Sbjct: 539 LQEKLQILENQIIQVNTKLTTAEAQANCNLNEKNKVDQLLTSYLLQLSQLEKEVDQLRVI 598

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              +    + + +Q ++L          Q L   L     +      E     +      
Sbjct: 599 AQQVAQQ-SAINKQQEQLV---------QALQKQLKDQTSQFNELSKENEKLYVDNSQLS 648

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             + QL        +     +    D     Q    L K+     + K ++E +IA ++ 
Sbjct: 649 TRISQLSELPNKIQILDEGLQKLQQDYNNELQANETLNKQLNDALKVKNDLENKIAMLST 708

Query: 608 KGE--AEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           + E    K     +   ++  +I ++E+Q A+++ F
Sbjct: 709 EVERFQYKLNSRQNEAEQLKKKIVELETQIALLKQF 744


>gi|121716270|ref|XP_001275744.1| chromosome segregation protein SudA, putative [Aspergillus clavatus
           NRRL 1]
 gi|119403901|gb|EAW14318.1| chromosome segregation protein SudA, putative [Aspergillus clavatus
           NRRL 1]
          Length = 1199

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 84/249 (33%), Gaps = 20/249 (8%)

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
             D R      ++N      + + +      IR  L++L Q          +  ++  + 
Sbjct: 659 FHDSRQSRLDGVRNLTKWRDEYESKKNRGTEIRRELEKLDQIITKAVGELQKLEQQRHQV 718

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
           ++  GP ++ ++S     +        +   L  +  + A L +Q            EL+
Sbjct: 719 QNSSGPLRQELRSKRDLLQKKNDNLDAKRKALRNIETNLAALNDQVNAFEA------ELK 772

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
             +    ++  E +      + Q L ++      ++ + + R + L     E     + Q
Sbjct: 773 SPFQKALTNEEEAQLESLSAVAQDLRQQYHELSAQRSELEARKSILEVELRENLNPHLDQ 832

Query: 577 GYQQALAL------------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA--ILISILH 622
            + + + +             +  + L +  E + +++ QV    E   +    L     
Sbjct: 833 LFSRDVDMVDDDGQGNLKETEREMKRLRKTLENLSQRLQQVDESIEKANSQVTELEQQKA 892

Query: 623 EVHIQIHQI 631
           E+  ++ ++
Sbjct: 893 EIRRELEEL 901


>gi|17016967|gb|AAL33548.1|AF435011_1 NUANCE [Homo sapiens]
          Length = 6885

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 90/279 (32%), Gaps = 18/279 (6%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+         +   L      ++   + +   ++  N  D  + ++++LK C    + +
Sbjct: 1809 PELSELKKQYESVSDLFNTKKSVLQDHFSKLLNDQCKNFNDWFSNIKVNLKECFESSETK 1868

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            K      Q + D L    +    +         K    +         +     + +  +
Sbjct: 1869 KSVEQKLQKLSDFLTLEGRNSKIKQVDSVLKHVKKHLPKAHVKELISWLVGQEFELEKME 1928

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                                +E    L  +    ++ + L  +L +   +++ +   E  
Sbjct: 1929 SICQA-------------RAKELEDSLQQLLRLQDDHRNLRKWLTN---QEEKWKGTEEP 1972

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                E     L ++ ++    A L ++  E    +  +   +A  L  R++ L RQ  EI
Sbjct: 1973 GEKTELFCQALARKREQFESVAQLNNSLKEYGFTEEEEIIMEATCLMDRYQTLLRQLSEI 2032

Query: 599  EKQ--IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            E++  +     +   +    +I  + E+   +  + S E
Sbjct: 2033 EEEDKLLPTEDQSFNDLAHDVIHWIKEIKESLMVLNSSE 2071


>gi|45384060|ref|NP_990605.1| myosin-11 [Gallus gallus]
 gi|63634|emb|CAA29793.1| unnamed protein product [Gallus gallus]
          Length = 1979

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 84/277 (30%), Gaps = 23/277 (8%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     +     E E        ++ ELE  L      I++++ R    QA + ++QQ  
Sbjct: 899  QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQM 958

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                 +        +K    +       + M+  ++  +       +E  LL        
Sbjct: 959  LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE------E 1012

Query: 497  ILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKYFLPEEIHQRLCER--G 545
             + +    LA+       L KL      + S+        E+     E+I ++L      
Sbjct: 1013 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1072

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----ALYKRFRLLSRQKEEIEKQ 601
              E + +L  Q+ +     A  E  +       +          K+ R L     ++++ 
Sbjct: 1073 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1132

Query: 602  IAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQEA 636
            +    A     +     L   L  +  ++       A
Sbjct: 1133 LESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTA 1169


>gi|297695291|ref|XP_002824883.1| PREDICTED: LOW QUALITY PROTEIN: nesprin-2-like, partial [Pongo
            abelii]
          Length = 6898

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 88/280 (31%), Gaps = 20/280 (7%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+         +   L      ++   + +   ++  N  D  + ++++LK C    + +
Sbjct: 1799 PELSELKKQYESVSDLFNTKKSVLQDHFSKLLNDQCKNFNDWFSNIQMNLKECFESSETK 1858

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            K      Q + D L    +    +         K    +         +     + +  +
Sbjct: 1859 KSVEQKLQKLSDFLSLEGRNSKIKQVDSVLKHVKKHLPKAHVKELTSWLVGQEFELEKME 1918

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                                +E    L  +    ++ + L  +L +   + K        
Sbjct: 1919 SICQA-------------RAKELEDSLEQLLRLRDDHRNLSKWLTNQEEKWKGMEESGEK 1965

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
              L       L ++ ++    A L ++  E    +  +   ++  L  R++ L RQ  EI
Sbjct: 1966 TEL---FCQALARKREQFESVAQLNNSLKEYGFTEEEEIIMESTCLMGRYQTLLRQLSEI 2022

Query: 599  EKQIAQVTAKGEA---EKTAILISILHEVHIQIHQIESQE 635
            E++  ++    +    +    +I  + E+   +  + S E
Sbjct: 2023 EEE-DKLPPTEDQSFNDLAHDVIHWIKEIKESLMVLNSSE 2061


>gi|302864673|ref|YP_003833310.1| ATP-dependent chaperone ClpB [Micromonospora aurantiaca ATCC 27029]
 gi|302567532|gb|ADL43734.1| ATP-dependent chaperone ClpB [Micromonospora aurantiaca ATCC 27029]
          Length = 863

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 45/142 (31%), Gaps = 9/142 (6%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-GELLKQLDRQVRDAGLWSA 565
            I   +    +L   + S  VE            + E     E       ++       A
Sbjct: 392 AIDLVDESASRLRMEIDSRPVEVDEIERAVRRLEIEEMALAKEPDAASAERLERLRKELA 451

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI------- 618
                +  + + +Q   +   +      + E +  +  +    GE E+ A L        
Sbjct: 452 DKREQLTALSERWQTEKSHITKLSTAKEELERLGGEAERAERDGELERAAELRYGRIPAL 511

Query: 619 -SILHEVHIQIHQIESQEAMIE 639
            + L +   ++ ++++  AM++
Sbjct: 512 RTELKQAEEELARLQADGAMLK 533


>gi|261188517|ref|XP_002620673.1| anucleate primary sterigmata protein B [Ajellomyces dermatitidis
            SLH14081]
 gi|239593157|gb|EEQ75738.1| anucleate primary sterigmata protein B [Ajellomyces dermatitidis
            SLH14081]
          Length = 1904

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/211 (9%), Positives = 63/211 (29%), Gaps = 6/211 (2%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             +  R     +    +        +   R   +     R   S   +  L  K       
Sbjct: 927  KLGQRRGDGGRSVAGDSIFERSISRAQDRSNSRTSDGTRSRTSDAERESLEIKNGELRDH 986

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +    + + +I  +  + ++D+   +   Q     +     + +    E           
Sbjct: 987  VSALKLENQSIRAQLDECMSDLEALDRAYQA---DVEQAEEDLQTIQMERDQAMQIADER 1043

Query: 547  GELLKQLDRQV-RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             E L+ L  +   +        +  I + ++   +    ++  + L  +     + I ++
Sbjct: 1044 EEALQDLKAEAQEELDAMGDELDQKIDECQRMEAELSNQHENLKALQAEMRSASEGIIRL 1103

Query: 606  T--AKGEAEKTAILISILHEVHIQIHQIESQ 634
               A+   +K   +   L + + ++ Q+E  
Sbjct: 1104 EQDAQNNLQKYKAVQQELDDANRELEQMEKS 1134


>gi|224122178|ref|XP_002330559.1| predicted protein [Populus trichocarpa]
 gi|222872117|gb|EEF09248.1| predicted protein [Populus trichocarpa]
          Length = 1681

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/282 (10%), Positives = 77/282 (27%), Gaps = 16/282 (5%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
            K         +              +          +   L++    I+  +    Y +
Sbjct: 313 TKEKKHADSEMAKAEAHRKLAEANWKKLMEEQSHTENICKQLEDARKRIEKPQKAEEYQR 372

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            +    ++  +      +   +    N     +K    +  + +  +   +K+       
Sbjct: 373 QLESLKKEAAESKSKLVAETLKLEDANKMLEAEKAKVMKERKRADSEVATAKEQRKLAET 432

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
               +I   +      ++L D R    EL+K  +           F  +           
Sbjct: 433 NGRKVIEEKSRADNLSRQLEDARIKIEELEKGINGFIQSKNMGGTFDDQH--DETTNGED 490

Query: 547 GELLKQLDRQVRDAG-----LWSATTEANIVDVRQGYQQALALYKRF--RLLSRQKEEIE 599
             +   L+    ++      L     +     +    ++A+   KR    ++  +K    
Sbjct: 491 ATIRDSLENLKNNSDQSKLVLEFLNNKEATKRLDIEKRKAITEKKRADSEMVKAEKLRNL 550

Query: 600 KQIAQVTAKGEAEKTAILISIL-------HEVHIQIHQIESQ 634
            ++ +  A  E  +   L   L        E+  QI +++S 
Sbjct: 551 SKMNRKIAAEEKSRADQLSRQLDEDKIKIEELQKQIQELQSS 592


>gi|149012299|ref|ZP_01833368.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147763625|gb|EDK70560.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP19-BS75]
          Length = 1081

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E  +E A +R D   L+ L   L       +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAEEEASLRSDEVSLKNLQDELARLTERLEAIKSQGEQARIQEQGLSLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  +  + +G  QA      +R   ++ +K  +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEELNRLSEGEWQADKEKCQERLTTITSEKNNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 833


>gi|145539946|ref|XP_001455663.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423471|emb|CAK88266.1| unnamed protein product [Paramecium tetraurelia]
          Length = 590

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/257 (10%), Positives = 86/257 (33%), Gaps = 14/257 (5%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
             +E +       + + E     +           +  Y + ++ + +   Q+   ++  
Sbjct: 168 IMKENKRCQQQLDNSQNEFYKLSEKFNQFESMYHSKIKYYEELQKQFELEQQRANFQYQE 227

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             R          Q     ++ Q    +     K    +  L          L +   E 
Sbjct: 228 LVRELHLLENENQQLYKQLQISQFEKDEKDKKTKDEQNQLKL---------ELHKIQDEN 278

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLW 563
             +   +  L+     ++ +   Q      ++ Q L   ++   ++ ++L  +V      
Sbjct: 279 KILEKSHRTLKIEKKVIYDN-QNQNKQKINKLEQDLNQKDQIIKQMEQELQEKVLIIHQL 337

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISIL 621
                      ++G +       +++ L ++ +++E+QIA++    +   ++   ++  L
Sbjct: 338 ENIAYGLKQSAQEGKENTNQTLLQYKDLMKECDQLEQQIARLEQDNDIVKKEYEQVLYEL 397

Query: 622 HEVHIQIHQIESQEAMI 638
            +   +  Q++ + A++
Sbjct: 398 KDTQQENRQLQERNALL 414


>gi|20072378|gb|AAH26645.1| Efcab4a protein [Mus musculus]
          Length = 293

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           S  +E      E + Q L  R          L ++L++Q+ +      +      + R  
Sbjct: 75  SACLEAAAREREGLEQALRRRESEHEREVRGLYEELEQQLGEQRHRRQSQNLPREEQRGH 134

Query: 578 YQQALALYKRFRLLSR---QKEEIEKQIAQ--VTAKGEAEKTAILISILHEVHIQIHQIE 632
               L L  R + L R   ++ E+E+Q+            +   L      +  Q+ Q +
Sbjct: 135 L--ELELQTREQELERAGLRQRELEQQLQARAAEQLEAQAQHIQLQRAYEAIRAQLDQAQ 192

Query: 633 SQEAMIEGFGKMSGR 647
            Q + +E  G+  GR
Sbjct: 193 EQLSRLE--GEAQGR 205


>gi|530207|gb|AAA66338.1| heat shock protein [Glycine max]
          Length = 911

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 74/210 (35%), Gaps = 16/210 (7%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
           + ++KY+ + + + R +++          +  +++    + +      +++ AL++   +
Sbjct: 319 EEYRKYVEKDAAFERRFQQVFVAEPSVVDTISILRGLKERYEGHHGVRIQDRALVMAAQL 378

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           ++  I      +   I   +     +   L S   E      + +   +           
Sbjct: 379 SNRYITGRHLPD-KAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALE----- 432

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-------RLLSRQKEEIEKQIAQV 605
              + + +          + D+R   Q  +  Y++        R L +++EE+   + + 
Sbjct: 433 -KEKDKASKARLVEVRKELDDLRDKLQPLMMKYRKEKERVDEIRRLKKKREELLFALQEA 491

Query: 606 TAKGEAEKTAIL-ISILHEVHIQIHQIESQ 634
             + +  + A L    + EV   I Q+E  
Sbjct: 492 ERRYDLARAADLRYGAIQEVETAIQQLEGS 521


>gi|327399725|ref|YP_004340594.1| replicative DNA helicase [Hippea maritima DSM 10411]
 gi|327182354|gb|AEA34535.1| replicative DNA helicase [Hippea maritima DSM 10411]
          Length = 466

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            S    +   +    E ALL +L    +   +  + + +  + + +   ++  L   +  
Sbjct: 2   KSNNAVRAYPQSIEAERALLCSLFLDNSKFADVIEIINENDFFDEKNASIFKVLKELYAN 61

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV------DVRQGYQQAL 582
              F    +   L E    +LL ++      +        AN          +   +Q +
Sbjct: 62  GIPFDFITVSNVLKE---KDLLDKIGPAYITSITEFLPAPANTEYYANIIKKKSVLRQLI 118

Query: 583 --------ALYKRFRLLSRQKEEIEKQI-----AQVTAKGEAEKTAILISILHEVHIQIH 629
                     Y+    +       EK++      + T    +E+ +  +         + 
Sbjct: 119 SMSTEIATMCYEEPEDVEDVLNIAEKRLFEVVSNRSTKYKSSEEASEDMLEY------LS 172

Query: 630 QIESQEAMIEG 640
           +++ ++++I G
Sbjct: 173 RLKERKSIITG 183


>gi|326916518|ref|XP_003204554.1| PREDICTED: rho-associated protein kinase 2-like [Meleagris gallopavo]
          Length = 1366

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 104/288 (36%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +    +E +       +E  +        +  ++DQ     Y         +
Sbjct: 800  MSEKQLKQENNHLQEIKLSLEKQNNELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 859

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+ I E                 K  S++L +S   +    L K
Sbjct: 860  ELKEECEEKTKLSKEMQQKIQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 919

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 920  EKIMKELEIKEMMARHKQELTEKDATIASLE---EANRTLTSDVANLANE-----KEELN 971

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L E    E + +L  +  + G   A  E  +++ R    QA+     +  R   + R 
Sbjct: 972  NKLKEE--QEQIAKLKEEEANIGNIKAQFEKQLLNERTLKTQAVNKLAEIMNRKGPVKRG 1029

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   ++        +I+++++Q A
Sbjct: 1030 ADTDVRRKEKENRKLHMELKSEREKLTQMMIKY---QKEINEMQAQIA 1074



 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 101/300 (33%), Gaps = 29/300 (9%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     + E+   E++  ++     E   +           +       +  + Q+    
Sbjct: 696 KNKIYESIEEAKSEAMKEMEKKLLEERALKQKVENRLLEAEKQRSMLDCDLKQSQQKINE 755

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             +  +D+L +  +    +        K+     D K  +Q++    + + +L ++ +  
Sbjct: 756 LLRQ-KDKLNEDVKNLTLKIEQ--ETQKRCLTQNDLKMQTQQVNTLKMSEKQLKQENNHL 812

Query: 484 EAALLLTLINHPAI----------LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           +   L     +  +          ++E   +L   +Y +   +     L  +  E+    
Sbjct: 813 QEIKLSLEKQNNELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVRELKEECEEKTKLS 872

Query: 534 PE--EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRL 590
            E  +  Q L +     L  QL+  +  A                  ++ +    +   +
Sbjct: 873 KEMQQKIQELQDER-DSLAAQLEITLTKADSEQLARSIAEEQYSDLEKEKIMKELEIKEM 931

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKT------------AILISILHEVHIQIHQIESQEAMI 638
           ++R K+E+ ++ A + +  EA +T              L + L E   QI +++ +EA I
Sbjct: 932 MARHKQELTEKDATIASLEEANRTLTSDVANLANEKEELNNKLKEEQEQIAKLKEEEANI 991


>gi|225860920|ref|YP_002742429.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229965|ref|ZP_06963646.1| chromosome segregation protein SMC [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254344|ref|ZP_06977930.1| chromosome segregation protein SMC [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502756|ref|YP_003724696.1| SMC structural maintenance of chromosomes partitioning protein
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225727720|gb|ACO23571.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238351|gb|ADI69482.1| SMC structural maintenance of chromosomes partitioning protein
           [Streptococcus pneumoniae TCH8431/19A]
          Length = 1179

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E  +E A +R D   L+ L   L       +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAEEEASLRSDEVSLKNLQDELARLTERLEAIKSQGEQARIQEQGLSLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  I  + +G  QA      +R   ++  K+ +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEEIDRLSEGDWQADKEKCQERLAAIASDKQNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 833


>gi|220672991|emb|CAX12653.1| myosin, heavy polypeptide 6, cardiac muscle, alpha [Danio rerio]
          Length = 1936

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 89/262 (33%), Gaps = 13/262 (4%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K + E +     +E  +   + +  I  ++        S+    R+++  +  + E 
Sbjct: 1566 NQLKADFERKMSEKDEEMEQARRNYQRMIESLQASLEAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPSQRL---MQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                    + A    ++    +         +   L     L+E   +  L     ++Q 
Sbjct: 1626 EIQLSQANRQAADAQKQLKMVQSCLKETQLQMDDTLHSNDDLKEN--ITLLERRNNLMQT 1683

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL-----CERGFGELLKQLDR 555
            + +EL  I      ++KL     +D  E+   L  +    +      E    +L  +L+ 
Sbjct: 1684 ELEELRGILEQTERVRKLAEQELTDATERMQLLHSQNTGLINQKKKQESDLLQLQNELEE 1743

Query: 556  QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             V++        +  I D     ++          L R K+ +E+ I  +  + +  +  
Sbjct: 1744 LVQENRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQV 1803

Query: 616  IL---ISILHEVHIQIHQIESQ 634
             +      L ++  +I ++E++
Sbjct: 1804 AMKGGKKQLQKMEARIRELENE 1825


>gi|254437051|ref|ZP_05050545.1| conserved hypothetical protein TIGR02302 [Octadecabacter
           antarcticus 307]
 gi|198252497|gb|EDY76811.1| conserved hypothetical protein TIGR02302 [Octadecabacter
           antarcticus 307]
          Length = 865

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 69/218 (31%), Gaps = 19/218 (8%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            ++L    +++    +      +++      K  + R+ Q          +    E   L
Sbjct: 389 AEQLTLPGRRFFQPIARAVIEQRRDILW--AKANAPRVAQVLRAVSNRPDELFPDETTYL 446

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER---- 544
                    +  + + +      ++   ++   L+   V+ +     +   RL       
Sbjct: 447 RL-----RFIIRRLENMETTGLSDDVQAEVVQALWELAVQLEEGSLADARARLERAQERL 501

Query: 545 -------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKE 596
                     E + +L +++R+A        A   +            +    +S+ + +
Sbjct: 502 EEAMRNGASDEEIAELMQELREAMNDYMQMLAQNAEPNPNGTDQPDNNQESNNISQDELQ 561

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +  +I ++  +G   +   L+  L+E+   +   E +
Sbjct: 562 AMMDRIQELMEEGRMAEAMELMEQLNELMENLRVTEGE 599


>gi|168483192|ref|ZP_02708144.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae CDC1873-00]
 gi|172043417|gb|EDT51463.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae CDC1873-00]
          Length = 633

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KATAEM-SQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|148994563|ref|ZP_01823722.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP9-BS68]
 gi|168488959|ref|ZP_02713158.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae SP195]
 gi|147927157|gb|EDK78194.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572413|gb|EDT92941.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae SP195]
 gi|332073476|gb|EGI83955.1| ABC transporter family protein [Streptococcus pneumoniae GA17570]
 gi|332201602|gb|EGJ15672.1| ABC transporter family protein [Streptococcus pneumoniae GA47368]
          Length = 633

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KATAEM-SQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|47212864|emb|CAF93221.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2754

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 66/189 (34%), Gaps = 25/189 (13%)

Query: 456  HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
             R ++   ++L +    K  L  +    +  L   +  H A + +  Q LA I       
Sbjct: 2053 SRAKQALEEQLSRLQREKNDLQSRMEEDQEDLNDLMKKHKAAVAQSAQNLAQIS------ 2106

Query: 516  QKLWSFLFSDFVEQKYFLP--EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
              L + L     E++      + +  +L  +    + K L  +           EA   +
Sbjct: 2107 -DLQAQLEEALKEKQEVQEKLQALQSQLEFQEQSMVEKSLVSRQ----------EAKTRE 2155

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG------EAEKTAILISILHEVHIQ 627
            +    +      KR   L  + +E  +++ +   +       E E+   L   + ++  +
Sbjct: 2156 LESRLEFERTQVKRLESLVARLKENMEKLTEDRDQRSGGENREKEQNKRLQRQIRDLKEE 2215

Query: 628  IHQIESQEA 636
            + ++  +EA
Sbjct: 2216 MGELAKKEA 2224


>gi|48146571|emb|CAG33508.1| C6orf18 [Homo sapiens]
          Length = 782

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 567 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 626

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 627 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 686


>gi|7020135|dbj|BAA91007.1| unnamed protein product [Homo sapiens]
 gi|39979303|dbj|BAD05130.1| StAR protein binding protein [Homo sapiens]
 gi|39979305|dbj|BAD05131.1| StAR protein binding protein 1b [Homo sapiens]
          Length = 782

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 567 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 626

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 627 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 686


>gi|310765344|gb|ADP10294.1| hypothetical protein EJP617_06130 [Erwinia sp. Ejp617]
          Length = 1111

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 73/205 (35%), Gaps = 20/205 (9%)

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
           K+ +    +  +   +QS+L   +  ++   R       + N P + +E  Q++A     
Sbjct: 37  KSNKTSANQTATVDALQSTLNWLEERQQSLERAQDYQQVIDNFPKLSRELRQQIATQTDS 96

Query: 512 NNELQK------LWSFLF----SDFVEQKYFLPEEIHQRLCERGFGEL------LKQLDR 555
              L+       L   +         E +    E+   R       +L       ++   
Sbjct: 97  RKPLRSSMSAADLEQEILLGSSQLLEESRQVQQEQDRAREISDSLSQLPQQQTEARRALG 156

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEA 611
           ++        +        ++  +QA +  ++ R+   +  ++     +++A++  +   
Sbjct: 157 EIERRLQGQPSPSTPAGQAQRAQRQAESAAQKARVDELELAQLSANNRQELARMRTEVHQ 216

Query: 612 EKTAILISILHEVHIQIHQIESQEA 636
            K A L   L ++  Q++ +  +EA
Sbjct: 217 RKAAELDDWLQDLRNQLNNLRQREA 241


>gi|315500966|ref|YP_004079853.1| ATP-dependent chaperone clpb [Micromonospora sp. L5]
 gi|315407585|gb|ADU05702.1| ATP-dependent chaperone ClpB [Micromonospora sp. L5]
          Length = 863

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 45/142 (31%), Gaps = 9/142 (6%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-GELLKQLDRQVRDAGLWSA 565
            I   +    +L   + S  VE            + E     E       ++       A
Sbjct: 392 AIDLVDESASRLRMEIDSRPVEVDEIERAVRRLEIEEMALAKEPDAASAERLERLRKELA 451

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI------- 618
                +  + + +Q   +   +      + E +  +  +    GE E+ A L        
Sbjct: 452 DKREQLTALSERWQTEKSHITKLSTAKEELERLGGEAERAERDGELERAAELRYGRIPAL 511

Query: 619 -SILHEVHIQIHQIESQEAMIE 639
            + L +   ++ ++++  AM++
Sbjct: 512 RTELKQAEEELARLQADGAMLK 533


>gi|254883887|ref|ZP_05256597.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. 4_3_47FAA]
 gi|294776288|ref|ZP_06741772.1| ATP-dependent chaperone protein ClpB [Bacteroides vulgatus PC510]
 gi|319641439|ref|ZP_07996131.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. 3_1_40A]
 gi|254836680|gb|EET16989.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. 4_3_47FAA]
 gi|294449875|gb|EFG18391.1| ATP-dependent chaperone protein ClpB [Bacteroides vulgatus PC510]
 gi|317386958|gb|EFV67845.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. 3_1_40A]
          Length = 862

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 67/212 (31%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++           +  +++    + +   K  +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQTVMVAEPDTLSTISILRGLKERYENHHKVRIKDEAIIAAVELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + E++     I   +    KL     S   E            +          +   
Sbjct: 377 RYITERFLPDKAIDLMDEAAAKLRMERDSVPEELDEISRHLKQLEIEREAIKREKDEPKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           Q  +  +     +      +  +Q    L  + +   ++ E+++ +  +   +G+  K  
Sbjct: 437 QQLNKEIAELKEQETSYKAK--WQSEKELVNKIQQNKQEIEQLKFEAEKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L + + ++   +   +   AMI+
Sbjct: 495 EIRYGKLQALENEIKDIQEDLKHKQGDSAMIK 526



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 71/272 (26%), Gaps = 41/272 (15%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       + L  + +  +DM              +    +   +      I        
Sbjct: 220 RIIRGDVPDNLKNKQIFSLDMGALVAGAKYKGEFEERLKSVVNEVIKAEGSI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      ++  P  L                   +   L   +             R+ +
Sbjct: 328 ERRFQTVMVAEPDTLSTI---------------SILRGLKERYENHHKV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + +        +  I  + +    A  L      +  + +EI + + 
Sbjct: 366 EAIIAAVELSNRYITER----FLPDKAIDLMDEA---AAKLRMERDSVPEELDEISRHLK 418

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           Q+  + EA K       L +++ +I +++ QE
Sbjct: 419 QLEIEREAIKREKDEPKLQQLNKEIAELKEQE 450


>gi|241667651|ref|ZP_04755229.1| chaperone ClpB [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876196|ref|ZP_05248906.1| chaperone clpB [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842217|gb|EET20631.1| chaperone clpB [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 859

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 10/136 (7%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    ++   +      +   +     + +  +   E LK+         L    
Sbjct: 390 AIDLVDEAASQIRMEI----DSKPEKMESLYRRIIQLKMQREQLKKEKDDATKKRLEILE 445

Query: 567 TEANIVDVR----QGYQQALALYKRFRL-LSRQKEEIEKQIAQVTAKGEAEKTAIL-ISI 620
            E   ++      +   +A  L  +    L  + E+ + ++ +    G+  K A L    
Sbjct: 446 AEIKGLESEYQGFEELWKAEKLKMQGTSKLKEELEKAKFELEKYQRAGDLSKMAELQYGK 505

Query: 621 LHEVHIQIHQIESQEA 636
           + E+  QI QIE+ EA
Sbjct: 506 IPELEAQIKQIENTEA 521


>gi|168485010|ref|ZP_02709948.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC1873-00]
 gi|172041873|gb|EDT49919.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC1873-00]
 gi|332201710|gb|EGJ15780.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA47368]
          Length = 1179

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 4/143 (2%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E  +E A +R D   L+ L   L       +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAEEEASLRSDEVSLKNLQDELARLTERLEAIKSQGEQARIQEQGLSLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  +  + +G  QA      +R   ++ +K  +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEELNRLSEGEWQADKEKCQERLTTITSEKNNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQ 634
           E+   L   L +  +   +++ Q
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQ 821


>gi|126307648|ref|XP_001367335.1| PREDICTED: similar to lamin A/C, isoform 2 [Monodelphis domestica]
          Length = 633

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNAKKEGDLLSAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  +        + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLDGEVHELRGQVAKLEAALSEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + KL+                   +  +  +
Sbjct: 209 NIYSEELRETKRRHETRLVEIDSGKQREFENKLADALQ--------------DLRAQHEE 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             +  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLSAKEAKLRDLEDALARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|7020157|dbj|BAA91016.1| unnamed protein product [Homo sapiens]
          Length = 782

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 567 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 626

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 627 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 686


>gi|157738611|ref|NP_061925.2| coiled-coil alpha-helical rod protein 1 isoform 3 [Homo sapiens]
 gi|42558938|sp|Q8TD31|CCHCR_HUMAN RecName: Full=Coiled-coil alpha-helical rod protein 1; AltName:
           Full=Alpha-helical coiled-coil rod protein; AltName:
           Full=Putative gene 8 protein; Short=Pg8
 gi|55962043|emb|CAI18328.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
 gi|56206480|emb|CAI18483.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
          Length = 782

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 567 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 626

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 627 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 686


>gi|15606774|ref|NP_214154.1| ATPase subunit of ATP-dependent protease [Aquifex aeolicus VF5]
 gi|54035745|sp|O67588|CLPB_AQUAE RecName: Full=Chaperone protein ClpB
 gi|2984005|gb|AAC07550.1| ATPase subunit of ATP-dependent protease [Aquifex aeolicus VF5]
          Length = 1006

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 36/92 (39%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           ++ +      +K   R V    L     +A      +   + +      + + R+ + +E
Sbjct: 497 KISDEAIEAAVKLTKRYVTFRRLPDKAIDALDQAAARKKLKVIGTPPEIQEIERKIKALE 556

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +QI +   KG+ EK A L     ++  +  ++
Sbjct: 557 EQIIEANLKGDYEKEAQLKIEKAKLEKEKQEL 588


>gi|302505838|ref|XP_003014876.1| hypothetical protein ARB_06633 [Arthroderma benhamiae CBS 112371]
 gi|291178447|gb|EFE34236.1| hypothetical protein ARB_06633 [Arthroderma benhamiae CBS 112371]
          Length = 2406

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 29/269 (10%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
             + +R               L   +K  +   +         + I+    +  Q      
Sbjct: 894  RIIQRNFHLYLNLKSSPWWRLFATMKPLLGETRTAGEVKKRDEKIQQLEAKAQQDIAERQ 953

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAILQE 500
                   K     +  +   +     +L K ++ K+  LRE  L   L   I     L++
Sbjct: 954  RIEDERRKIETEMQRIRKTLESERSLALDKEEIFKRLQLREVELSEKLAGAIADQESLED 1013

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVR 558
            Q  EL   +      +K+   L  D    +     +I +RL   ++   E +  +++Q++
Sbjct: 1014 QLDELIAAK------KKIEHEL--DLRRGQLEQAAQIMERLEGEKKELQERISDMEKQLK 1065

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA--- 615
                     +  I  + Q       L     +  ++ +++E ++     + + E      
Sbjct: 1066 SVESTHGEYDEKIGALNQEIN---TLNSHLAMKDKKLQDLEAKLLSSDQQLDLELANTTK 1122

Query: 616  ----------ILISILHEVHIQIHQIESQ 634
                       L+    E+  QI  + S 
Sbjct: 1123 ELEGSKKQIKQLLEENREIQRQIADLSST 1151


>gi|255552157|ref|XP_002517123.1| protein binding protein, putative [Ricinus communis]
 gi|223543758|gb|EEF45286.1| protein binding protein, putative [Ricinus communis]
          Length = 479

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
              F     +L+ +V  A      ++A+  ++ +    A   Y +   L +Q E  + ++
Sbjct: 364 SSDFEAETVKLEDEVEKALYELQKSQASEFEIAEERLMAQKKYLQN--LYQQLEREKSEL 421

Query: 603 AQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMIEGFG 642
            + T+  + +     ++  ++++  ++ +++  E + +GFG
Sbjct: 422 KRPTSSTKRDVLVKAVLERVNQIKREVAKLKDMEEVAKGFG 462


>gi|189184238|ref|YP_001938023.1| putative conjugative transfer protein TraI [Orientia tsutsugamushi
           str. Ikeda]
 gi|189181009|dbj|BAG40789.1| putative conjugative transfer protein TraI [Orientia tsutsugamushi
           str. Ikeda]
          Length = 825

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 107/356 (30%), Gaps = 30/356 (8%)

Query: 60  GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-LPVVDPKIEKKEKIQTDLI 118
           G +Y FS   KGD LS +     CSF E+ + L ++ G+  +     +  K +  Q    
Sbjct: 272 GKWYDFSTGQKGDLLSLVQRERVCSFFEAREYLKSMVGMSNISQRYQRPPKTDDSQQ--- 328

Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
                    +    ++ +  ++    +                  +    ++++L  +G 
Sbjct: 329 ---------YTQQSESVKIAKVQNLYERSSRIHGYEIDTSPSAEVE---IVKKYLENRGI 376

Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
           + +K   +  L       T             R+S+G++              K   S  
Sbjct: 377 TFDKSTASSDLKASILFDTQTRENYPAFTAFARNSKGEITGVQA-VYLNSAGDKANISIN 435

Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
              F K +  +                   N  +  I+ EG    LSL Q+G++  + + 
Sbjct: 436 RRSFGKIRGSF-----------ITIAKRNANDPNITIIAEGAETALSLQQSGIEGNIIAS 484

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
                            +I++  D D          I       + G     V      D
Sbjct: 485 AGISNLTNYSPF--PGEKIIIAADNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPENGD 542

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            ++ ++  G  +   +I   +  +    +     ++ N    +     ++K   N 
Sbjct: 543 FNNLLQTCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDITNVKELYNK 598


>gi|170571242|ref|XP_001891652.1| myosin heavy chain, nonmuscle type 1 [Brugia malayi]
 gi|158603721|gb|EDP39541.1| myosin heavy chain, nonmuscle type 1, putative [Brugia malayi]
          Length = 1969

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 93/263 (35%), Gaps = 12/263 (4%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
            M  +++ E  +    D   + + + +   +   D +      + + + L+++ +K  T  
Sbjct: 1625 MEMEQQLELANRLKDDYSRQFKKYQQIIKDMQHDNEEVRQSKEELANSLREMERKLRTLD 1684

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
            +   R  + N     QK   +                ++ E   L   +       E+ Q
Sbjct: 1685 AENTRLLEANESLMSQKRQLEAEKDELEDARSRGGGMNVDERRRLEAKVAALEEEVEEEQ 1744

Query: 504  ELADIRYDNNE-----LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV- 557
             LA++  D        +++L + L  +    +    E+       R     + +L+    
Sbjct: 1745 SLAELALDKQRKAQMQVEQLTTELSVERSTTQKLETEKQAMERANRELKNKVSELETSAQ 1804

Query: 558  RDAGLWSATTEANIVDVRQGY----QQALALYKRFRLLSRQKEEIEKQIA--QVTAKGEA 611
              +    A  EA I  + + Y    Q+     +++R + ++  +   Q+   +   +   
Sbjct: 1805 TRSRAQIAALEAKIQYLEEQYNAESQERANATRQYRRIEKRLADAILQLEDERRNTEQNK 1864

Query: 612  EKTAILISILHEVHIQIHQIESQ 634
            E+     + + ++  ++ ++E +
Sbjct: 1865 EQAEREKTRVRQIRRRLDEMEEE 1887



 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 77/255 (30%), Gaps = 34/255 (13%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
              +  ELE  L+     + ++K+    ++ IR  L    +   TE+         +   +
Sbjct: 1110 QKQIRELESALEELKEDLDNEKVLREKAEKIRRDLNDDLETLRTEYLEAADKTAISLEIQ 1169

Query: 458  DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
             +K    + ++ +L     +      E            + Q+  + + ++     + ++
Sbjct: 1170 KKKDEELKELKRALEIANSANDAKAEE------------LKQKYQKHIEELDEQVEQQKR 1217

Query: 518  LWSFLFSDFVEQKYFLPEEIHQRLC----------------ERGFGELLKQLDRQVRDAG 561
            L S                +   L                 E    EL  ++        
Sbjct: 1218 LRSQ-AEKTKNSLDIEKASLAAELTVVQAAKAEADKKRKQAETACVELNARIAELDSAKS 1276

Query: 562  LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
              +        ++    +Q     +    L R+   +E+Q+A+   + + E    L    
Sbjct: 1277 ALTQHLAKAQSELDAVVKQKEEDEQNVSALQRKITLLERQLAEAQDQLQEETRNKL---- 1332

Query: 622  HEVHIQIHQIESQEA 636
              +  ++ Q+E   A
Sbjct: 1333 -AMQTRVRQLEDDLA 1346


>gi|150006304|ref|YP_001301048.1| endopeptidase Clp ATP-binding chain B [Bacteroides vulgatus ATCC
           8482]
 gi|149934728|gb|ABR41426.1| endopeptidase Clp ATP-binding chain B [Bacteroides vulgatus ATCC
           8482]
          Length = 862

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 67/212 (31%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++           +  +++    + +   K  +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQTVMVAEPDTLSTISILRGLKERYENHHKVRIKDEAIIAAVELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + E++     I   +    KL     S   E            +          +   
Sbjct: 377 RYITERFLPDKAIDLMDEAAAKLRMERDSVPEELDEISRHLKQLEIEREAIKREKDEPKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           Q  +  +     +      +  +Q    L  + +   ++ E+++ +  +   +G+  K  
Sbjct: 437 QQLNKEIAELKEQETSYKAK--WQSEKELVNKIQQNKQEIEQLKFEAEKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L + + ++   +   +   AMI+
Sbjct: 495 EIRYGKLQALENEIKDIQEDLKHKQGDSAMIK 526



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 71/272 (26%), Gaps = 41/272 (15%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       + L  + +  +DM              +    +   +      I        
Sbjct: 220 RIIRGDVPDNLKNKQIFSLDMGALVAGAKYKGEFEERLKSVVNEVIKAEGSI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      ++  P  L                   +   L   +             R+ +
Sbjct: 328 ERRFQTVMVAEPDTLSTI---------------SILRGLKERYENHHKV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + +        +  I  + +    A  L      +  + +EI + + 
Sbjct: 366 EAIIAAVELSNRYITER----FLPDKAIDLMDEA---AAKLRMERDSVPEELDEISRHLK 418

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           Q+  + EA K       L +++ +I +++ QE
Sbjct: 419 QLEIEREAIKREKDEPKLQQLNKEIAELKEQE 450


>gi|126334600|ref|XP_001366038.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform 2
            [Monodelphis domestica]
          Length = 1972

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 877  ELEQKHTQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 936

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA + ++ Q       +        +K    +       + M+  ++        
Sbjct: 937  RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKMEDDILVMDDQNNK 996

Query: 481  SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
              +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E++
Sbjct: 997  LTKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKM 1056

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L      F E +  L  Q+ +  +  A  E  +          +A   +     ++ 
Sbjct: 1057 KRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDDEIA---QKNNALKKI 1113

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
             E+E  I+ +    ++E+ A   +     ++  ++  ++++
Sbjct: 1114 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1154


>gi|168984996|emb|CAQ10498.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
 gi|168985401|emb|CAQ07085.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
 gi|168985843|emb|CAQ10777.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
 gi|272718627|gb|ACZ95702.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
 gi|272718629|gb|ACZ95704.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
          Length = 782

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 567 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 626

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 627 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 686


>gi|125717644|ref|YP_001034777.1| ABC transporter ATPase [Streptococcus sanguinis SK36]
 gi|125497561|gb|ABN44227.1| ABC-NBD transporters with duplicated ATPase domains, putative
           [Streptococcus sanguinis SK36]
          Length = 631

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 17/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIVELSETGSTLYLGDYDYYLEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++   +   +         +    ++  ++   L +R   L  Q E+++ QI+
Sbjct: 532 KAEQEALRE---ETEQSSPDKPAPANDYQLQKENQKEQRRLARRLEQLETQIEDLDSQIS 588

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
           Q+    EA   A   + L E   QI Q+ +  +EAM+E
Sbjct: 589 QLQEAMEATNDA---AELMESQQQIDQLTAAQEEAMLE 623


>gi|9635662|ref|NP_061570.1| Orf74 [Pseudomonas phage D3]
 gi|8895172|gb|AAF80830.1| replicative DNA helicase [Pseudomonas phage D3]
          Length = 446

 Score = 43.3 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 49/166 (29%), Gaps = 12/166 (7%)

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP---EEIHQRLCE 543
           +L  ++  P ++    +EL+   +  +    L+  +                E  + LC+
Sbjct: 13  VLGAMLKQPHLISVLSEELSPDAFAYSVNADLYRLILDLESAGTPIDIITLAEAKEFLCD 72

Query: 544 R-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY-KRFRLLSRQKEE 597
                   GE+L  +              E  I          +     +   +  +  +
Sbjct: 73  ETRTMAYVGEILSNIVSVANAKEYARIVRERAISRQIADVASGVEEVAHQNCSIEDKIAQ 132

Query: 598 IEKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +     +      GE +    ++    EV  + H    +  M++G
Sbjct: 133 AQALVLGLDAGGTNGECQMVGDILRDHVEVLQERHDRAQKGDMLDG 178


>gi|315049833|ref|XP_003174291.1| myosin type-2 heavy chain 2 [Arthroderma gypseum CBS 118893]
 gi|311342258|gb|EFR01461.1| myosin type-2 heavy chain 2 [Arthroderma gypseum CBS 118893]
          Length = 2406

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 80/232 (34%), Gaps = 32/232 (13%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    Q +  + QQ   +         +   +  R R      + L    L K ++ K+ 
Sbjct: 935  RDEKIQQLEAKAQQDIAERQRIEEDRRKIEAEMHRVRKTLESERSLA---LDKEEIFKRL 991

Query: 481  SLREAAL---LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             LRE  L   L   I     L++Q  EL   +      +K+   L  D    +     +I
Sbjct: 992  QLREVELSDKLAGAIADQESLEDQLDELIAAK------KKIEHEL--DLRRGQLEQAAQI 1043

Query: 538  HQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             +RL   ++   E +  +++Q++      +  +  I  + Q       L     L  ++ 
Sbjct: 1044 MERLEGEKKELQERISDMEKQLKSVETTHSEYDEKIEALNQEIN---TLNSHLNLKDKKL 1100

Query: 596  EEIEKQIAQVTAKGEAE-------------KTAILISILHEVHIQIHQIESQ 634
            +++E ++     + + E             +   L+    E+  QI  + S 
Sbjct: 1101 QDLEAKLLSSDQQLDLELAHTTKELEASKKQIKQLLEDNREIQRQIADLSST 1152


>gi|330916905|ref|XP_003297604.1| hypothetical protein PTT_08064 [Pyrenophora teres f. teres 0-1]
 gi|311329641|gb|EFQ94317.1| hypothetical protein PTT_08064 [Pyrenophora teres f. teres 0-1]
          Length = 728

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 49/143 (34%), Gaps = 10/143 (6%)

Query: 516 QKLWSFLFSDFVEQKYFLPE------EIHQRLCERGFGELL----KQLDRQVRDAGLWSA 565
           +++   L     E++           E+ +++ E      +     +  ++  +A L  +
Sbjct: 384 EEVRKTLEKRAQEEQEADKRKEMYTVELQRQIQEAAAKTKILEEEAKAKKRQEEAELQKS 443

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
             EA     R   ++A+   +    L  + +E ++ +          ++  +      + 
Sbjct: 444 FEEAAAALQRSIEEKAVEKRRFQEDLEAKLQEAKEAVRLELEAKALAESDAVADRFRALE 503

Query: 626 IQIHQIESQEAMIEGFGKMSGRL 648
             + + E  EA +      SG L
Sbjct: 504 TLLKEKERNEAAMHAASSQSGTL 526


>gi|302865867|ref|YP_003834504.1| chromosome segregation protein SMC [Micromonospora aurantiaca ATCC
           27029]
 gi|315502412|ref|YP_004081299.1| chromosome segregation protein smc [Micromonospora sp. L5]
 gi|302568726|gb|ADL44928.1| chromosome segregation protein SMC [Micromonospora aurantiaca ATCC
           27029]
 gi|315409031|gb|ADU07148.1| chromosome segregation protein SMC [Micromonospora sp. L5]
          Length = 1199

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 63/205 (30%), Gaps = 18/205 (8%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           +RL  L  +   +    GR  +   R    +   +      L     + + +L +     
Sbjct: 189 NRLTDLTAELRRQLKPLGRQAEVARRAAGIQANLRDARLRLLADDLHTLRTTLDKE---- 244

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
             I     L+E+ + +      + E+Q     L +   E    L              E 
Sbjct: 245 --IADETALRERRELIEAE---HGEVQGRLGELEAALAEDAPLLAAAQDTWYRLSALQER 299

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            + +++  R+     +    +    R           +    SR+  E E+++ +     
Sbjct: 300 FRSIEQLARERLRHLSAAGDDERPGRDPE--------QLEAESRRVREQEEEL-RAALTE 350

Query: 610 EAEKTAILISILHEVHIQIHQIESQ 634
           +  + A  +    E+  Q+   E +
Sbjct: 351 DQIRLAEAVEHRQELERQLAAAERE 375



 Score = 37.9 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 66/216 (30%), Gaps = 14/216 (6%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            RL  +      +   +        +HR +K  + R + +           +      L 
Sbjct: 144 GRLDGMLHAKPEDRRAFIEEAAGVLKHRKRKEKALRKLDAMQTNLNRLTDLTAELRRQLK 203

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQR--LCERG 545
            L     + +            +  L+ L   L      ++++      + +R  L E  
Sbjct: 204 PLGRQAEVARRAAGI--QANLRDARLRLLADDLHTLRTTLDKEIADETALRERRELIEAE 261

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
            GE+  +L          +      +   +  + +  AL +RFR + +   E  + ++  
Sbjct: 262 HGEVQGRLGELEAALAEDAPL----LAAAQDTWYRLSALQERFRSIEQLARERLRHLSAA 317

Query: 606 TAKG----EAEKTAILISILHEVHIQIHQIESQEAM 637
                   + E+       + E   ++    +++ +
Sbjct: 318 GDDERPGRDPEQLEAESRRVREQEEELRAALTEDQI 353


>gi|301100043|ref|XP_002899112.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262104424|gb|EEY62476.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 585

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 67/264 (25%), Gaps = 50/264 (18%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R      I  RL  +  +            + N      K       +          
Sbjct: 20  VDRGATGADIYRRLWLVASRASLAMPFELTLRRHNLAQVSAKIVPFARRKDVQDAQVAQL 79

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIR----YDNNELQKLWSFLFSDFVEQ----- 529
                E   L   I    +   Q  +         + +  LQ+L + +      Q     
Sbjct: 80  AKLAAEEVALPIAIRRKKLFLIQQLDFEREHYLESFLSEPLQELHTRIMDSCQWQIYEFG 139

Query: 530 --------------------KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
                                +    ++  R+  +     L  + +            E 
Sbjct: 140 KTLWYFHAPTVRLCAQHPLRNHPEARQLIDRVQLQVQQARLMVIIQAEMRRHEEVKRKER 199

Query: 570 NIVDVRQGYQQALALYKR--------------FRLLSRQKE---EIEKQIAQVTAKGEAE 612
            +       Q  +  Y+R               + + RQ++   E +++I ++  K + E
Sbjct: 200 ELQHAVLRIQHRIRAYQRRKRVLAIIEAEKIRQKEIRRQQQLAEERQREIQRIEEKRQFE 259

Query: 613 ----KTAILISILHEVHIQIHQIE 632
               +   L   L E+  ++ Q++
Sbjct: 260 AMQFEQQRLQQELVELKQELRQLK 283


>gi|227877552|ref|ZP_03995612.1| replicative DNA helicase DnaB [Lactobacillus crispatus JV-V01]
 gi|256843820|ref|ZP_05549307.1| replicative DNA helicase [Lactobacillus crispatus 125-2-CHN]
 gi|256849625|ref|ZP_05555057.1| replicative DNA helicase [Lactobacillus crispatus MV-1A-US]
 gi|262046293|ref|ZP_06019256.1| replicative DNA helicase [Lactobacillus crispatus MV-3A-US]
 gi|293380902|ref|ZP_06626938.1| replicative DNA helicase [Lactobacillus crispatus 214-1]
 gi|295691877|ref|YP_003600487.1| replicative DNA helicase [Lactobacillus crispatus ST1]
 gi|312977108|ref|ZP_07788857.1| replicative DNA helicase [Lactobacillus crispatus CTV-05]
 gi|227862851|gb|EEJ70310.1| replicative DNA helicase DnaB [Lactobacillus crispatus JV-V01]
 gi|256613725|gb|EEU18927.1| replicative DNA helicase [Lactobacillus crispatus 125-2-CHN]
 gi|256713741|gb|EEU28730.1| replicative DNA helicase [Lactobacillus crispatus MV-1A-US]
 gi|260573623|gb|EEX30180.1| replicative DNA helicase [Lactobacillus crispatus MV-3A-US]
 gi|290922575|gb|EFD99541.1| replicative DNA helicase [Lactobacillus crispatus 214-1]
 gi|295029983|emb|CBL49462.1| Replicative DNA helicase [Lactobacillus crispatus ST1]
 gi|310896436|gb|EFQ45501.1| replicative DNA helicase [Lactobacillus crispatus CTV-05]
          Length = 463

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 3/122 (2%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +        E A+L  +   P  + +    +    +     Q ++  +           
Sbjct: 6   SQQIPHDRDAERAVLGAIFIDPEAIADASAVVQPEDFYERANQIVFQAMLDLSDRGDAID 65

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +   L +      L+ +      + L  AT  A  V          AL +R    S+
Sbjct: 66  TLTLQDELNK---RNQLEDIGGIGYVSELAMATPTAAHVTYYAKIVHRKALLRRLISASQ 122

Query: 594 QK 595
           + 
Sbjct: 123 KI 124


>gi|188588588|ref|YP_001922697.1| replicative DNA helicase [Clostridium botulinum E3 str. Alaska E43]
 gi|251777608|ref|ZP_04820528.1| replicative DNA helicase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188498869|gb|ACD52005.1| replicative DNA helicase [Clostridium botulinum E3 str. Alaska E43]
 gi|243081923|gb|EES47813.1| replicative DNA helicase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 446

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/176 (6%), Positives = 51/176 (28%), Gaps = 19/176 (10%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +   +    E +++ ++I   + + +  + L +  +  +  + ++  +   F +      
Sbjct: 7   RTLPQSIEAEQSVIGSMIIDKSAIAKVLESLEEEDFYRDGHKVIFRAILDMFRKDMAVDL 66

Query: 535 EEIHQRLCERGFGEL-------------------LKQLDRQVRDAGLWSATTEANIVDVR 575
             + + L      E                    L    + V +  +     +A+   + 
Sbjct: 67  VTLLESLKSTEMLERAGGVTYITEISASVPTTANLSSYIKIVEEKSVLRKLIKASTSIIE 126

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             Y     +        ++  +I ++      +  ++        +  +     +I
Sbjct: 127 SSYNNQGEVENVLDGAEKRIFDIAEKKTSKDFEPLSDVLERGFLEIERLFNNRGEI 182


>gi|170029480|ref|XP_001842620.1| structural maintenance of chromosomes smc4 [Culex quinquefasciatus]
 gi|167863204|gb|EDS26587.1| structural maintenance of chromosomes smc4 [Culex quinquefasciatus]
          Length = 1362

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 48/418 (11%), Positives = 121/418 (28%), Gaps = 30/418 (7%)

Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV--------LSLCQAGVQNV 294
           + G  +   F              + N    ++ V GY           + L  +     
Sbjct: 84  YAGHVMLGPFHQRFSAIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLLHSSSKHPN 143

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL- 353
             S    +   Q+      S  +V   + +    R A +                 V   
Sbjct: 144 TQSCTVGVHFQQILDREDGSFEVV--PNTEFVVARTASRDNSSYYTIDNRKVHFKEVSKL 201

Query: 354 --SRGEDPDSFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
               G D D       +   E + +++   L +                   +  + +  
Sbjct: 202 LKQHGIDLDHNRFLILQGEVESISMMKPKALTENDCGLLEYLEDIVGTTRYKQPLVKINE 261

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  + +++   +    + +R  +  +K + E   Y +      R R+Q+      +Q  
Sbjct: 262 RVEALNEERTEKHNRCKLAEREMKDLEKPMNEAVEYLKLENSLTRTRNQQ------IQKY 315

Query: 471 LVKGKLSKKPSLREA-ALLLTLINHPAILQEQY-QELADIRYDNNELQKLWSFLFSDFVE 528
           L + K       +E       L  H    +    + +        E+++ +  L     +
Sbjct: 316 LSEQKKKIVELDQERDQAAAILTKHDETFEALKKERIEKENLVKEEIKQ-YDSLVKAKED 374

Query: 529 QKYFLPEEIHQRLC-ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           ++  L   + +    +       ++  + +                  +  ++     K+
Sbjct: 375 KEAALKSSLDKYTKVQANMKATNERRKKTMTQIETEKKKLHELQAVPEKNAKEITESEKK 434

Query: 588 FRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              L+RQK ++E  +A+         +   E+   L + L ++   +   +S  A+ E
Sbjct: 435 IESLTRQKTDLETTLAENLTTLKDETQPLLEQKEQLQTELIDLKKAVDDSKSALALAE 492


>gi|152988436|ref|YP_001350185.1| nuclease sbcCD subunit C [Pseudomonas aeruginosa PA7]
 gi|150963594|gb|ABR85619.1| nuclease sbcCD subunit C [Pseudomonas aeruginosa PA7]
          Length = 1211

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/329 (11%), Positives = 87/329 (26%), Gaps = 31/329 (9%)

Query: 336  DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
                       R   +     ED            +++      P    L +   + R  
Sbjct: 745  QRQQALHEQQQRCEHLRQQVEEDDQQLRLLLSAEHWQRWQDAPEPTFQALAQAIEQRRHQ 804

Query: 396  NTP-----DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
                     +  ELE         +K    +   ++   ++ Q            +    
Sbjct: 805  QDRLLQVEQQLQELERRGDELQWQLKQNDEQRSQARQAEEQTQAELAGLRGRLGAHLGRH 864

Query: 451  KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL----- 505
             +    +     + +  Q+++   +        E   L   + H    Q + QE      
Sbjct: 865  TRAQDWQQALENAVQAAQATVETLQAPLDTLREEQLRLGEALEHLQHQQSRQQEERQRLQ 924

Query: 506  --------ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
                         D++ L  L         + +     E  Q+L E    +   + +RQ 
Sbjct: 925  ADWQAWREGQENLDDSRLDALL-----ALPDAQARQWREHLQQLQEEITRQRTLEAERQE 979

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
            +         E +   +    +Q     +R     +   +   Q+     +   E++  L
Sbjct: 980  QLQQHRRQRPELDHEALEDILRQQ---RERLAASEQAYLDAYSQLQADNQR--REQSQAL 1034

Query: 618  ISILHEVHIQIHQIESQEAMIEGFGKMSG 646
            ++ L +   +  +      +I   G  SG
Sbjct: 1035 LAELEQARAEFRRWGRLNELI---GSSSG 1060


>gi|55981861|ref|YP_145158.1| excinuclease ABC subunit B [Thermus thermophilus HB8]
 gi|62299025|sp|Q56243|UVRB_THET8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|55773274|dbj|BAD71715.1| excinuclease ABC subunit B (UvrB) [Thermus thermophilus HB8]
          Length = 665

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 1/102 (0%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSR 593
           E + + + E      L++           +   E   V   +GY++A L        L  
Sbjct: 553 EAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPLEADLSGEDLRE 612

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +  E+E  + Q     + E+ A L   +  +  ++  + + E
Sbjct: 613 RIAELELAMWQAAEALDFERAARLRDEIRALEARLQGVRAPE 654


>gi|5296000|dbj|BAA81890.1| HCR [Homo sapiens]
          Length = 756

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 541 LQLEVARQCQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 600

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 601 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 660


>gi|14249342|ref|NP_116116.1| alpha-internexin [Homo sapiens]
 gi|20141266|sp|Q16352|AINX_HUMAN RecName: Full=Alpha-internexin; Short=Alpha-Inx; AltName: Full=66
           kDa neurofilament protein; Short=NF-66;
           Short=Neurofilament-66; AltName: Full=Neurofilament 5
 gi|13623507|gb|AAH06359.1| Internexin neuronal intermediate filament protein, alpha [Homo
           sapiens]
 gi|55961122|emb|CAI16744.1| internexin neuronal intermediate filament protein, alpha [Homo
           sapiens]
 gi|119570038|gb|EAW49653.1| internexin neuronal intermediate filament protein, alpha, isoform
           CRA_a [Homo sapiens]
 gi|123984627|gb|ABM83659.1| internexin neuronal intermediate filament protein, alpha [synthetic
           construct]
 gi|123998609|gb|ABM86906.1| internexin neuronal intermediate filament protein, alpha [synthetic
           construct]
          Length = 499

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/316 (9%), Positives = 82/316 (25%), Gaps = 34/316 (10%)

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           G        S G D         +    +   +               +      +   L
Sbjct: 63  GLAYRRPPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRAL 122

Query: 405 EIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           E  L        +   +   + + +RD   QL +              ++    + +   
Sbjct: 123 EAELAALRQRHAEPSRVGELFQRELRDLRAQLEEASSARSQALLE---RDGLAEEVQRLR 179

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD----NNELQKLW 519
            R  + S  +    +    ++  +    +    + ++    L ++ +     + E+ +L 
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTE--------A 569
           + L +                L           + L  +   +      ++        A
Sbjct: 240 ATLQASSQAAAEVDVTVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299

Query: 570 NIVDVRQGYQQALALYKRF---------------RLLSRQKEEIEKQIAQVTAKGEAEKT 614
              +  +  ++ +  Y+R                  L RQ  E+E++       G  +  
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEER-HSAEVAGYQDSI 358

Query: 615 AILISILHEVHIQIHQ 630
             L + L     ++ +
Sbjct: 359 GQLENDLRNTKSEMAR 374


>gi|312869939|ref|ZP_07730078.1| chromosome segregation protein SMC [Lactobacillus oris PB013-T2-3]
 gi|311094524|gb|EFQ52829.1| chromosome segregation protein SMC [Lactobacillus oris PB013-T2-3]
          Length = 1188

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 77/208 (37%), Gaps = 5/208 (2%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           +R+  +  +  ++             + +QK    RL Q+ LV+    +   L+   L  
Sbjct: 189 NRVNDIISELASQLEPLADQSALAKDYLEQKEQFDRLDQTQLVRNYDQQHDQLQ--RLQG 246

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD--FVEQKYFLPEEIHQRLCERGFG 547
            L +   ++ +  ++ A    +  + ++  + L  D     Q      ++      +   
Sbjct: 247 KLADSRQLVDQYRKKTAAADTELEKYKQQRTALQRDKDAANQSILRQTQLIADYQNQQSI 306

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             +K+  ++     L    + AN  +  Q  ++  A+ +      +   E +KQ+     
Sbjct: 307 STVKRQQQEQEQHRLSEQIS-ANQQEQEQVQKRLAAVKQDLTAHEQTMAEHKKQLQAAEQ 365

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQE 635
           +  +E+   L + L E+  Q  ++  Q+
Sbjct: 366 QTASERLQQLQARLEELRNQQIELLQQQ 393


>gi|195126735|ref|XP_002007826.1| GI12163 [Drosophila mojavensis]
 gi|193919435|gb|EDW18302.1| GI12163 [Drosophila mojavensis]
          Length = 2955

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 528  EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
            +Q             ER   E   +L+ Q + A +  A  E     +    Q       R
Sbjct: 1175 DQAEREKAIREAEARERLAREEQARLEAQRQQAAIEQAQRELAARQLSLREQAVREEEAR 1234

Query: 588  FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL--HEVHIQIHQIESQEA 636
             + +  Q     +Q+A+  A  E E+    +  +   E  +++  +  +EA
Sbjct: 1235 LQAVREQ--AAREQLAREQAAREEEQRIQTLREIAKREEELRLQALRDEEA 1283


>gi|167627089|ref|YP_001677589.1| chaperone ClpB [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597090|gb|ABZ87088.1| chaperone ClpB [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 859

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 10/136 (7%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    ++   +      +   +     + +  +   E LK+         L    
Sbjct: 390 AIDLVDEAASQIRMEI----DSKPEKMESLYRRIIQLKMQREQLKKEKDDATKKRLEILE 445

Query: 567 TEANIVDVR----QGYQQALALYKRFRL-LSRQKEEIEKQIAQVTAKGEAEKTAIL-ISI 620
            E   ++      +   +A  L  +    L  + E+ + ++ +    G+  K A L    
Sbjct: 446 AEIKGLESEYQGFEELWKAEKLKMQGTSKLKEELEKAKFELEKYQRAGDLSKMAELQYGK 505

Query: 621 LHEVHIQIHQIESQEA 636
           + E+  QI QIE+ EA
Sbjct: 506 IPELEAQIKQIENTEA 521


>gi|7546428|pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
           Excision Repair Enzyme
 gi|1325924|dbj|BAA08653.1| UvrB [Thermus thermophilus]
          Length = 665

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 1/102 (0%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSR 593
           E + + + E      L++           +   E   V   +GY++A L        L  
Sbjct: 553 EAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPLEADLSGEDLRE 612

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +  E+E  + Q     + E+ A L   +  +  ++  + + E
Sbjct: 613 RIAELELAMWQAAEALDFERAARLRDEIRALEARLQGVRAPE 654


>gi|11276069|ref|NP_068707.1| dystrobrevin beta isoform 1 [Homo sapiens]
 gi|13626370|sp|O60941|DTNB_HUMAN RecName: Full=Dystrobrevin beta; Short=DTN-B; AltName:
           Full=Beta-dystrobrevin
 gi|2935183|gb|AAC05082.1| beta-dystrobrevin [Homo sapiens]
 gi|3127913|emb|CAA75737.1| dystrobrevin B DTN-B1 [Homo sapiens]
 gi|119621129|gb|EAX00724.1| dystrobrevin, beta, isoform CRA_f [Homo sapiens]
          Length = 627

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +        E AL+ + +             + +   + E + +  +   
Sbjct: 355 PTPTKRLQYSQDIPSHLADEHALIASYVARLQHCARVLDSPSRL---DEEHRLIARYAAR 411

Query: 525 DFVEQKYFL--PEEI-HQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E       P ++       +   +L+ +L+ + R+            E       + 
Sbjct: 412 LAAEAGNVTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEK 471

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 472 AQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEELMKLLKE-EEQKQAAQAT 529


>gi|9955068|pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
           Enzyme Uvrb From Thermus Thermophilus
          Length = 664

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 1/102 (0%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSR 593
           E + + + E      L++           +   E   V   +GY++A L        L  
Sbjct: 552 EAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPLEADLSGEDLRE 611

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +  E+E  + Q     + E+ A L   +  +  ++  + + E
Sbjct: 612 RIAELELAMWQAAEALDFERAARLRDEIRALEARLQGVRAPE 653


>gi|301775609|ref|XP_002923225.1| PREDICTED: Golgin subfamily A member 3-like [Ailuropoda
           melanoleuca]
          Length = 1582

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 108/305 (35%), Gaps = 25/305 (8%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                       +  ++E L L ++    +       +  E+  + + L+     + DQ+
Sbjct: 668 GEMAHIQVGQMTQAGLLEHLKLENVSLSHQLTETQHRSIKEKERIAVQLQGIEADMLDQE 727

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             +   Q  +  +++  Q+ + E        +K A            +  +L +     +
Sbjct: 728 AAFVQIQEAKTMVEEDLQRRLEEFEDEKEQLQKVAASAASLEQRLEQVNLTLQQRDQQLE 787

Query: 480 PSLREAA-LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY----FLP 534
              RE   LL  L +    LQ + Q L D++   +ELQ     L  +   +         
Sbjct: 788 VLQREHLDLLRQLTSTQETLQAREQSLGDLQMRFDELQARLEELQGEAASRDDTIRFLQN 847

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ----QALALYKRFRL 590
           E+I   +  +    + ++LDR  +     +  T   +  +RQ       Q   L +    
Sbjct: 848 EKIVLEVALQAARSVREELDRGAKRLEEGTEQTSQVLEQLRQELAVKSSQVEHLQQEAAT 907

Query: 591 LSRQKEEIEKQIAQV---------TAKGEAEKTAILIS-------ILHEVHIQIHQIESQ 634
           L +Q ++I++Q  Q           A  + +  + L +        L E+  ++ +++ +
Sbjct: 908 LKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATKKRLDSELKELRQELIKLQGE 967

Query: 635 EAMIE 639
           +  +E
Sbjct: 968 KKSVE 972


>gi|297734183|emb|CBI15430.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 71/192 (36%), Gaps = 21/192 (10%)

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI-- 508
           ++  R  + +  SQ+  +      +  KK S  E   L       ++L+   +E+ ++  
Sbjct: 29  EQGLRIAENQENSQKNRRKLAESTRDFKKASPDEKLNL-----FNSLLKGYQEEVDNLTK 83

Query: 509 --RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
             ++  N    ++  L+          P      + E+     L +L+ + R   +    
Sbjct: 84  RAKFGENAFLNIYQKLYEA------PDPYPALASIAEQDMK--LSELESENRKMKVELEE 135

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE--- 623
                  ++        L +R R L +Q EE  K+I ++  +  AE+    + +L E   
Sbjct: 136 FRTEATHLKNQQATIRRLEERNRQLEQQMEEKVKEIVEMKQRSLAEENQKTLEVLKERER 195

Query: 624 -VHIQIHQIESQ 634
            +  Q+ Q +  
Sbjct: 196 LLQDQLRQAKES 207


>gi|262381636|ref|ZP_06074774.1| ATP-dependent chaperone ClpB [Bacteroides sp. 2_1_33B]
 gi|262296813|gb|EEY84743.1| ATP-dependent chaperone ClpB [Bacteroides sp. 2_1_33B]
          Length = 862

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/142 (9%), Positives = 43/142 (30%), Gaps = 12/142 (8%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    +L   + S                +          +   +  +  +    
Sbjct: 388 AIDLMDEAAARLRLQIDSVPESLDEVSRRIKQLEIEREAIKRENDKSKLEQLNKEIADLK 447

Query: 567 TEANIVDVR-QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI------- 618
            E      + Q  ++ +   ++ ++     E ++ +  +   +G+  K A +        
Sbjct: 448 EEETKQKAQWQSEKEQINKIQQNKI---DIENLKFEADKAEREGDYGKVAEIRYGKIKQK 504

Query: 619 -SILHEVHIQIHQIESQEAMIE 639
              + EV  ++  ++   AMI+
Sbjct: 505 EEEIREVQAKLKTMQGAAAMIK 526


>gi|207723265|ref|YP_002253664.1| replicative dna helicase protein [Ralstonia solanacearum MolK2]
 gi|206588463|emb|CAQ35426.1| replicative dna helicase protein [Ralstonia solanacearum MolK2]
          Length = 473

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 65/192 (33%), Gaps = 17/192 (8%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
            R         +   L   K+       E ++L  L+   A        + +  +   + 
Sbjct: 4   PRRYNPAMNAPIDPQLESLKVPPHSIEAEQSVLGGLLLDNAAWDRIADFINEFDFYRYDH 63

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE----ANI 571
           + ++  +     + K      ++++L   G  E +  L      A    +       A I
Sbjct: 64  RLIFHNIGKLISQAKPADVITVYEQLQAAGKAEEVGGLAYLNALAQNTPSAANIRRYAEI 123

Query: 572 VDVRQGYQQALAL---------YKRFRLLSRQKEEIEKQ---IAQVTAKGEAEKTAILIS 619
           V  R   +Q + +           + R + +  +E E +   IA+  A+G+      +  
Sbjct: 124 VRDRGVLRQLVTIADEISAGAFNPQGRDVRQLLDEAESKVFAIAEEGARGQKG-FLEIQP 182

Query: 620 ILHEVHIQIHQI 631
           +L +V  +I ++
Sbjct: 183 LLTQVVERIDEL 194


>gi|168065432|ref|XP_001784656.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663802|gb|EDQ50547.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 891

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 46/117 (39%), Gaps = 12/117 (10%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRL--CERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            KL  +L +   +       +  +R+   ++   E ++++++Q+R  G      +  I  
Sbjct: 73  NKLRKYLLAVVQQTIVSSLSDFGRRMGDADKDLDEQIREVEKQIRSVGEEIRIVKQEIER 132

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           V++  +    L ++      Q  + + Q+    A+   EK       L +   Q+ +
Sbjct: 133 VQERIETCSNLQEKA-----QLRDEKAQLRDNEAQLRREK-----GQLRDKEAQLRE 179



 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 44/99 (44%), Gaps = 1/99 (1%)

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD-VRQGYQQALALYKRFRLLSRQK 595
           +  +L +     + + +   + D G      + ++ + +R+  +Q  ++ +  R++ ++ 
Sbjct: 71  LRNKLRKYLLAVVQQTIVSSLSDFGRRMGDADKDLDEQIREVEKQIRSVGEEIRIVKQEI 130

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           E ++++I   +   E  +     + L +   Q+ + + Q
Sbjct: 131 ERVQERIETCSNLQEKAQLRDEKAQLRDNEAQLRREKGQ 169


>gi|9453839|dbj|BAB03273.1| myosin [Chara corallina]
          Length = 2182

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 46/148 (31%), Gaps = 12/148 (8%)

Query: 498  LQEQYQELADIRYDNNELQKLWSF---LFSDFVEQKYFLPEEIHQRLC---------ERG 545
            ++E    + +  +     Q L +    L     + +    +   Q L           + 
Sbjct: 1462 IREPEPAIGETEFTEANSQALRAENQTLKQQLEQLESQDLQRNLQHLEANSQALRAENQT 1521

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
              + L+QL+ Q     L      +  +       +        + L R  + +E +   +
Sbjct: 1522 LKQQLEQLESQDLQRNLQHLEANSQALRAENQTLKQQLEQLESQDLQRNLQHLEAKCQAL 1581

Query: 606  TAKGEAEKTAILISILHEVHIQIHQIES 633
             A+ E  K  +      ++   +  +E+
Sbjct: 1582 RAENETLKQQLEQLESQDLQRNLQHLEA 1609



 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 57/138 (41%), Gaps = 9/138 (6%)

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            +E   ++  +  +N++L++L          ++          L      ELL + + QV+
Sbjct: 979  KEVLDKVEALSEENSKLKELVEDYEKKKALEESSAKRIEEADLKRDAIQELLNRSEEQVQ 1038

Query: 559  D--AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
            D  +   S  +E   + +     +  AL  +   L  +K+++++ +  + A      +  
Sbjct: 1039 DLISENQSLQSEKLNLQLDNRILRQQALSMK--DLELEKQDLQRNLQHLEA-----NSQA 1091

Query: 617  LISILHEVHIQIHQIESQ 634
            L +    +  Q+ Q+ESQ
Sbjct: 1092 LRAENQTLKQQLEQLESQ 1109



 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 91/281 (32%), Gaps = 23/281 (8%)

Query: 362  FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
              R       +  +  +   V+ +     + R  +  D         +     +  Q  +
Sbjct: 920  IARNSELAKLKFAMEGAQAQVEQMKILLAKEREGHEADLAQAKVAAAQLLEAEMSAQASK 979

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                  + D+++ L ++          Y KK A        ++R+ ++ L +  + +  +
Sbjct: 980  -----EVLDKVEALSEENSKLKELVEDYEKKKALEESS---AKRIEEADLKRDAIQELLN 1031

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
              E  +   +  + ++  E+     +++ DN  L++    +    +E++        Q L
Sbjct: 1032 RSEEQVQDLISENQSLQSEKL----NLQLDNRILRQQALSMKDLELEKQDLQRN--LQHL 1085

Query: 542  C---------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                       +   + L+QL+ Q     L      +  +       +        + L 
Sbjct: 1086 EANSQALRAENQTLKQQLEQLESQDLQRNLQHLEANSQALRAENQTLKYQLEQLESQDLQ 1145

Query: 593  RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            R  + +E     + A+ +  K  +      ++   +  +E+
Sbjct: 1146 RDLQHLEANSQALRAENQTLKQQLEQLESQDLQRNLQHLEA 1186


>gi|332812947|ref|XP_003309016.1| PREDICTED: dystrobrevin beta isoform 4 [Pan troglodytes]
          Length = 597

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +        E AL+ + +             + +   + E + +  +   
Sbjct: 355 PTPTKRLQYSQDIPSHLADEHALIASYVARLQHCARVLDSPSRL---DEEHRLIARYAAR 411

Query: 525 DFVEQKYFL--PEEI-HQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E       P ++       +   +L+ +L+ + R+            E       + 
Sbjct: 412 LAAEAGNVTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEK 471

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 472 AQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEELMKLLKE-EEQKQAAQAT 529


>gi|332242945|ref|XP_003270641.1| PREDICTED: dystrobrevin beta isoform 4 [Nomascus leucogenys]
          Length = 597

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +        E AL+ + +             + +   + E + +  +   
Sbjct: 355 PTPTKRLQYSQDIPSHLADEHALIASYVARLQHCARVLDSPSRL---DEEHRLIARYAAR 411

Query: 525 DFVEQKYFL--PEEI-HQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E       P ++       +   +L+ +L+ + R+            E       + 
Sbjct: 412 LAAEAGNVTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEK 471

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 472 AQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEELMKLLKE-EEQKQAAQAT 529


>gi|302915543|ref|XP_003051582.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732521|gb|EEU45869.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1334

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 68/229 (29%), Gaps = 22/229 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + ++ +L+ L +K   +     +  K        +   Q L Q    + + + +     
Sbjct: 315 IEDLKAKLKVLERKRAEDRDKLKQLEKVQGERDKFESVIQMLQQKYQPQQQENNE----- 369

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              L  L+    +  E  +E+        EL  L   +  +  E      + + ++  E 
Sbjct: 370 ---LKKLLKEAEMRLESIEEIQAEHDSILELATLDREMAEETAEVLKVELDALKEKAEEM 426

Query: 545 GFGELLKQLDRQVRDAGL---------WSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                + + + +    G+         W      N        +           L  Q 
Sbjct: 427 ELEVEILREENEEYSKGMTPEERSSTGWLQMERTNERLREALLRLRDLTQASEEELKDQI 486

Query: 596 EEIEKQIAQVTAKGEA-----EKTAILISILHEVHIQIHQIESQEAMIE 639
             +E+ + +     E      EK     S + ++  Q+      E MIE
Sbjct: 487 AGLEEDLKEFNTMKEEYGVCREKLEQSQSAVEDLRQQLDNALGAEDMIE 535



 Score = 37.6 bits (85), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 52/152 (34%), Gaps = 14/152 (9%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-ERGFGELLKQLDRQ 556
            ++  ++L +      E  +    +  D    K    E     +  E+   E L   D  
Sbjct: 530 AEDMIEDLTERNMSMAEQIEELKAVIDDLESLKEINDELEINHVQNEKEMQEELDFKDSV 589

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           + +    +   E ++ D+     +   L    +          + + +  ++   +++  
Sbjct: 590 ITEQARRAVQQEESLEDMEYTLSRFRELVTSLQSDLDDMR-ASQAVTEGESEKLNDRSRA 648

Query: 617 LI------------SILHEVHIQIHQIESQEA 636
           ++            + +  + +++ ++E+QEA
Sbjct: 649 MMDLNMKLQISAAKAQVKTIDLELRRLEAQEA 680


>gi|119620092|gb|EAW99686.1| dynactin 1 (p150, glued homolog, Drosophila), isoform CRA_c [Homo
           sapiens]
          Length = 973

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 106 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 165

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 166 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 225

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 226 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 285

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 286 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 345

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 346 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 405

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 406 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 461



 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 90  VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 149

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 150 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 209

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 210 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 263

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 264 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 307


>gi|119601248|gb|EAW80842.1| spectrin repeat containing, nuclear envelope 2, isoform CRA_e [Homo
            sapiens]
          Length = 6885

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 90/279 (32%), Gaps = 18/279 (6%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+         +   L      ++   + +   ++  N  D  + ++++LK C    + +
Sbjct: 1809 PELSELKKQYESVSDLFNTKKSVLQDHFSKLLNDQCKNFNDWFSNIKVNLKECFESSETK 1868

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            K      Q + D L    +    +         K    +         +     + +  +
Sbjct: 1869 KSVEQKLQKLSDFLTLEGRNSKIKQVDSVLKHVKKHLPKAHVKELISWLVGQEFELEKME 1928

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                                +E    L  +    ++ + L  +L +   +++ +   E  
Sbjct: 1929 SICQA-------------RAKELEDSLQQLLRLQDDHRNLRKWLTN---QEEKWKGTEEP 1972

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                E     L ++ ++    A L ++  E    +  +   +A  L  R++ L RQ  EI
Sbjct: 1973 GEKTELFCQALARKREQFESVAQLNNSLKEYGFTEEEEIIMEATCLMDRYQTLLRQLSEI 2032

Query: 599  EKQ--IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            E++  +     +   +    +I  + E+   +  + S E
Sbjct: 2033 EEEDKLLPTEDQSFNDLAHDVIHWIKEIKESLMVLNSSE 2071


>gi|119601249|gb|EAW80843.1| spectrin repeat containing, nuclear envelope 2, isoform CRA_f [Homo
            sapiens]
          Length = 6884

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 90/279 (32%), Gaps = 18/279 (6%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+         +   L      ++   + +   ++  N  D  + ++++LK C    + +
Sbjct: 1809 PELSELKKQYESVSDLFNTKKSVLQDHFSKLLNDQCKNFNDWFSNIKVNLKECFESSETK 1868

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            K      Q + D L    +    +         K    +         +     + +  +
Sbjct: 1869 KSVEQKLQKLSDFLTLEGRNSKIKQVDSVLKHVKKHLPKAHVKELISWLVGQEFELEKME 1928

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                                +E    L  +    ++ + L  +L +   +++ +   E  
Sbjct: 1929 SICQA-------------RAKELEDSLQQLLRLQDDHRNLRKWLTN---QEEKWKGTEEP 1972

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                E     L ++ ++    A L ++  E    +  +   +A  L  R++ L RQ  EI
Sbjct: 1973 GEKTELFCQALARKREQFESVAQLNNSLKEYGFTEEEEIIMEATCLMDRYQTLLRQLSEI 2032

Query: 599  EKQ--IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            E++  +     +   +    +I  + E+   +  + S E
Sbjct: 2033 EEEDKLLPTEDQSFNDLAHDVIHWIKEIKESLMVLNSSE 2071


>gi|114647243|ref|XP_509420.2| PREDICTED: citron isoform 3 [Pan troglodytes]
          Length = 2069

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 92/277 (33%), Gaps = 22/277 (7%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
             +   +   EKL         +  K        ++ + + +    ++   N +KD    
Sbjct: 664 QAKERAERELEKLQNREDSSEGIRKKLVEAEERRHSLENKVKRLETMERRENRLKDDIQT 723

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+               +         +++ + + K       
Sbjct: 724 KSQQIQQMADKILELEEKHREAQVSAQHLEVHLKQKEQHYEEKIKVLDNQIKK------- 776

Query: 481 SLREAALLLTLIN-HPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            L +   L  ++  H     E+ + L++    I   +++++ L   +       K     
Sbjct: 777 DLADKETLENMMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANS 836

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +  +   +   E++ +L +Q       +   EA     R+  +Q   +  +      + 
Sbjct: 837 SLFTQRNMKAQEEMISELRQQKFYLETQAGKLEA---QNRKLEEQLEKISHQDHSDKNRL 893

Query: 596 EEIEKQIAQVTAKGEAEKTA------ILISILHEVHI 626
            E+E ++ +V+ + E +K         L   L E   
Sbjct: 894 LELETRLREVSLEHEEQKLELKRQLTELQLSLQERES 930


>gi|8272482|gb|AAF74221.1|AF216493_1 a-helical protein [Homo sapiens]
          Length = 756

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 541 LQLEVARQCQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 600

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 601 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 660


>gi|326665578|ref|XP_002661089.2| PREDICTED: hypothetical protein LOC100331068 [Danio rerio]
          Length = 1604

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 109/320 (34%), Gaps = 19/320 (5%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D          +  DL       GNR      +   D    I+        K   +    
Sbjct: 1270 DQSIEDYVTKGRNPDLKKLISDCGNRFLAFNNNEKHDKTQVIKLLKLIEEVKSNNQGRYF 1329

Query: 382  VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
             + +++    +      +   E E  ++     ++D+       + + +  Q+  ++   
Sbjct: 1330 TNDMFEEAEMSIKKKMEEILKEREREIQKQREELQDKYEMEM--KRLEEEKQRAEEERRK 1387

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
              +      +K  +   +K  +++  +    + +L ++   R          +   ++E 
Sbjct: 1388 MENQLKLKEEKLRKEFKEKEKTEQNKREIENQKRLEEEKQQR--------AEYHQRIEEM 1439

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +E+ + R    + QK          E+     E++     ER   E+ ++ + +++   
Sbjct: 1440 KREIDNQRSQYEQQQKEREDEDRKREEKYRQDQEKMRND-QERIIAEVQRKQEEEIKKRE 1498

Query: 562  LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI- 620
            L            RQ +++ +      +     ++EI+++I +   + E E         
Sbjct: 1499 LEKKRRNEEEEGERQRWERRI------KEAENDRKEIQEEIKRQQREWEDEMKRREKKEQ 1552

Query: 621  -LHEVHIQIHQIESQEAMIE 639
             + E+  ++ + + Q+ ++E
Sbjct: 1553 LIQELQQKLEERQKQQELLE 1572


>gi|325568558|ref|ZP_08144851.1| hypothetical protein HMPREF9087_1140 [Enterococcus casseliflavus
           ATCC 12755]
 gi|325157596|gb|EGC69752.1| hypothetical protein HMPREF9087_1140 [Enterococcus casseliflavus
           ATCC 12755]
          Length = 614

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 45  FHDEKTPSFHCNDSKGF----YYCFS-CH-VKGDHLSFLSALLGC-SFIESVQRLAAIAG 97
           FHDE  PS     +K      Y CFS  H   GD +  L   LG  SF E +  L  +  
Sbjct: 259 FHDEDNPSASVYFAKDIQIYMYKCFSESHPFHGDIVKVLKEYLGFRSFSEVMDLLIKVTD 318

Query: 98  VPLPVVDPKIEKKEKIQT 115
             +  +    + K     
Sbjct: 319 SEISYLSEIGQAKRDYND 336


>gi|289618615|emb|CBI54859.1| unnamed protein product [Sordaria macrospora]
          Length = 1131

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 53/132 (40%), Gaps = 15/132 (11%)

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           + L ++   +   L EE+  RL E      + +++L +Q +         E     +++ 
Sbjct: 546 AELTAELQAEHDRLKEEL-SRLQEELADKDQRIERLAKQRKTEEDLREEIENLQDSLKEI 604

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT------------AILISILHEVH 625
             + +   +R + L ++K+E++ +I ++  + +A  +              L     ++ 
Sbjct: 605 GFEHVETKQRLKELEQEKKELKARIDELEKEVDAAASAAQTNTKLQSEHESLRQEFDDLK 664

Query: 626 IQIHQIESQEAM 637
            +   ++S  A 
Sbjct: 665 QKSQTLQSDLAA 676



 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 72/213 (33%), Gaps = 12/213 (5%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           + L+Q F     +            +    +      ++  L K +   K   +EAA L 
Sbjct: 654 ESLRQEFDDLKQKSQTLQSDLAAAQQLAQGRYKDLTDLREVLQKAQPELKSLRQEAATLK 713

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFS--DFVEQKYFLPEEIHQRLCERGFG 547
           T+    +      + L          + L + L         +    + +H ++ +    
Sbjct: 714 TVREELSARNADLRNLEKRE------KDLKADLVRSQRLAADRDGEIKALHDKVGQETNA 767

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQG--YQQALALYKRFRLLSRQKEEIEKQIAQV 605
            L  + +++V    L  +  E   +  R+    ++   + +    L  +  E+E+++ ++
Sbjct: 768 RLKLEDEKRVLGRDLRRSEAEKIEIAAREEKTARELQRVQEEANKLRPRIRELEEEVNRL 827

Query: 606 TAKGE--AEKTAILISILHEVHIQIHQIESQEA 636
             +G+   E+  +  +        +  +  Q A
Sbjct: 828 RKEGDMMREEVQLKSTQYTSAQNLLGSMRDQTA 860


>gi|284802110|ref|YP_003413975.1| hypothetical protein LM5578_1865 [Listeria monocytogenes 08-5578]
 gi|284995252|ref|YP_003417020.1| hypothetical protein LM5923_1817 [Listeria monocytogenes 08-5923]
 gi|284057672|gb|ADB68613.1| hypothetical protein LM5578_1865 [Listeria monocytogenes 08-5578]
 gi|284060719|gb|ADB71658.1| hypothetical protein LM5923_1817 [Listeria monocytogenes 08-5923]
          Length = 475

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 2/117 (1%)

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESV-QRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           +Y  +       +  +  L   SF E+V   L    GV         E ++K   +L   
Sbjct: 53  WYDHAAEEGSHAIDLVKRLYHLSFPEAVSLLLGGEQGVEYKQYSKNSEPEQKKSFNLPEA 112

Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
                  F + +K    D+ +     +  +     +     +       +  H  +K
Sbjct: 113 NTDMRRVFAYLIKQRFIDRNVLTEFAKVKLLYEDKDYHNAVFVGVDENDVPRHAHKK 169


>gi|320007905|gb|ADW02755.1| DnaB domain protein helicase domain protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 390

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 28/98 (28%)

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
             +     R     + R   + +     S + +  E  LL  L   P  + E    L   
Sbjct: 153 ARRWGTDPRPVPPTAGRAAATDIPPPAQSGQVAEEERFLLAVLAEQPGAMGEVVAWLRPG 212

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            + +    +L+  L +     +      +      RG 
Sbjct: 213 DFADPTHGQLYRCLGALHHRGEPIDRITLLWEAQRRGL 250


>gi|123396914|ref|XP_001300992.1| Kinesin motor domain containing protein [Trichomonas vaginalis G3]
 gi|121882113|gb|EAX88062.1| Kinesin motor domain containing protein [Trichomonas vaginalis G3]
          Length = 659

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/228 (8%), Positives = 76/228 (33%), Gaps = 25/228 (10%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           ++  +      +RD++ +L ++   + +  G     N+  +  +   ++ M+  + K  +
Sbjct: 337 NEDPKDALIGQLRDKIAELKRQLAEQEANGGIPVPDNSEMKAIEAAHKKKMEELMAKKNI 396

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           +++   +                +   E    +    + + L   L     +      E 
Sbjct: 397 TEEERRKMK-------------DDLEGEYEKQKQIKEQNEALKQKL-KQMEQSVLIGGEN 442

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +  +  ++      +++ RQ  +               ++   + L + K++  +  +  
Sbjct: 443 LVTKAKQQE-----EEIRRQKSEERKQIEIQRQLEEKRKEREDKLLLVEKKYSSMKDELT 497

Query: 597 EIEKQIAQVTA-----KGEAEKTAILIS-ILHEVHIQIHQIESQEAMI 638
           E ++ I ++       +   +           E    I +++ + A++
Sbjct: 498 EKQETIKKLEPLIKTLEQNIDDIQAQFESEKEEQSKHIKKMQKEIALL 545


>gi|23465750|ref|NP_696353.1| peptide chain release factor 2 [Bifidobacterium longum NCC2705]
 gi|189439805|ref|YP_001954886.1| peptide chain release factor 2 [Bifidobacterium longum DJO10A]
 gi|239622364|ref|ZP_04665395.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|296453666|ref|YP_003660809.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
           longum JDM301]
 gi|312133211|ref|YP_004000550.1| prfb [Bifidobacterium longum subsp. longum BBMN68]
 gi|322690619|ref|YP_004220189.1| peptide chain release factor [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|23326435|gb|AAN24989.1| peptide chain release factor 2 [Bifidobacterium longum NCC2705]
 gi|189428240|gb|ACD98388.1| Protein chain release factor B [Bifidobacterium longum DJO10A]
 gi|239514361|gb|EEQ54228.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291517272|emb|CBK70888.1| bacterial peptide chain release factor 2 (bRF-2) [Bifidobacterium
           longum subsp. longum F8]
 gi|296183097|gb|ADG99978.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
           longum JDM301]
 gi|311772412|gb|ADQ01900.1| PrfB [Bifidobacterium longum subsp. longum BBMN68]
 gi|320455475|dbj|BAJ66097.1| peptide chain release factor [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 374

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E I + L        +K L+ Q    GLW     A    +      A +  KR    S++
Sbjct: 18  ESIAKALDVDRLKADIKDLETQAAAPGLWDDPENA--QKITSRLSAAESQLKRLNSASQR 75

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +++E  +     +G+ +      S + E+   + Q+E Q  +++G
Sbjct: 76  IDDVETLVELGHEEGDQDSLDEAQSEIGEIQKDLDQMEIQT-LLDG 120


>gi|74186248|dbj|BAE42912.1| unnamed protein product [Mus musculus]
          Length = 1239

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%)

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
                  L +L    +      +   +   +  DL              L ++    +  
Sbjct: 201 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 260

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                      L  E         ++E E       +   +LEI          D     
Sbjct: 261 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 320

Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Y  + + ++  +L    +           +     +  +  +Q L      + +L ++ S
Sbjct: 321 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVWQQRERLQEELS 380

Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538
             E+ +        A L  +E  + L D   +  E +++L   +       +     + +
Sbjct: 381 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 440

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R  E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    
Sbjct: 441 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 500

Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
           ++   +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 501 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558



 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 79/268 (29%), Gaps = 19/268 (7%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
           P  +    R          +         K  +  ++  K++    Q  + ++Q+  Q  
Sbjct: 176 PSKEEEGLRAQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQE-QQAD 234

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
           +       R   K A    ++   +    +  ++     K    E A   +L      L+
Sbjct: 235 LQRRLKEARKEAKEALEAKERYMEEMADTADAIEMATLDKEMAEERA--ESLQQEVEALK 292

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           E+  EL        +L+ L + +     +      +            + L ++      
Sbjct: 293 ERVDEL------TTDLEILKAEIEEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSSS 346

Query: 560 AGLWSAT----TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
                       E    ++   +QQ   L +         +E+++Q+      G  E   
Sbjct: 347 EKQEHVKLQKLMEKKNQELEVVWQQRERLQEELSQAESTIDELKEQVDAA--LGAEEMVE 404

Query: 616 ILISILHEVHIQIHQIESQ----EAMIE 639
           +L      +  ++ ++       EAM E
Sbjct: 405 MLTDRNLNLEEKVRELRETVGDLEAMNE 432


>gi|87306408|ref|ZP_01088555.1| replicative DNA helicase [Blastopirellula marina DSM 3645]
 gi|87290587|gb|EAQ82474.1| replicative DNA helicase [Blastopirellula marina DSM 3645]
          Length = 474

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 9/153 (5%)

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
           K   Q    ++ +  +        E  +L ++   P    E    +    + +   +KL+
Sbjct: 6   KRVDQPERPTAEILDRQPPCNLEAEMGVLGSIFLLPDCADEVVMIVRPDDFYDEANKKLY 65

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             +       +      + ++L   G  E +       R          A      + Y 
Sbjct: 66  EHMVRLHDSGRKVDLTLLAEQLKSDGDFEFIGGAAYLARVLNSVPNAAHA------EHYA 119

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           Q +A     R L        + +     + +  
Sbjct: 120 QIVAAKSINRNL---ISAATEILRDAYDENDKA 149


>gi|67592791|ref|XP_665666.1| kinesin heavy chain [Cryptosporidium hominis TU502]
 gi|54656457|gb|EAL35436.1| kinesin heavy chain [Cryptosporidium hominis]
          Length = 757

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 67/219 (30%), Gaps = 16/219 (7%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y Q + + +++L  +         +            G  + L + ++       
Sbjct: 388 AERNNYIQTLEELVKKLGGELPENKPSGDKGGSIILNSSLNIGERKELQEGTIPGS---- 443

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E   L         L E  +    ++ ++ ++ +L   +       K    E+ +
Sbjct: 444 -----EKTTLNMRTLDNDELDELEEAKQQLKENSEKITQLKQEISEKENNLKLMSEEKEN 498

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             +      +L+++L +        + T E   +  +    +          L  + EE 
Sbjct: 499 LNIK---LSDLIQELSQTKYQQQDQAETVEHLQLKNKSLIGELEQSQIHIHDLEARIEEY 555

Query: 599 EKQIAQVTAKGEAEKTAILIS----ILHEVHIQIHQIES 633
           + + +Q   + +  ++          + ++   +  I S
Sbjct: 556 KSEESQRRNEEKENESNKAFQSLSSEIQQLREYLLAIRS 594


>gi|331217423|ref|XP_003321390.1| hypothetical protein PGTG_02432 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300380|gb|EFP76971.1| hypothetical protein PGTG_02432 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1590

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 69/226 (30%), Gaps = 15/226 (6%)

Query: 417 DQKLRYYYSQAIRDR------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
           D +        + +       L +  +   T      R  ++  +   +K    +L   S
Sbjct: 596 DAEEVSQLKARVAELEATQANLTERLRAESTAAITASRKAQQETQIHIRKTEDLKLQLLS 655

Query: 471 LVKGKLSKKPSLREAA--LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           + +    +K  L +    L+  L N    ++   + +  +        +L S   S    
Sbjct: 656 VKEEARHEKERLTQDQQPLITELANASETIERLNERIGQLE------DELKSRTKSLQDT 709

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
           ++             R   +L  +    V D  +     + +     +  +       R 
Sbjct: 710 ERQVTSARATADDATRELHDLEARHRDHVSDHEIVLNRLQQSRDRCTELERGLADCQSRN 769

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           + LS Q E+ + ++    A    E    +   + E+  ++   + Q
Sbjct: 770 QTLSSQVED-QTKLMASRASEAEELRERMEKEISELKARLEDEKQQ 814


>gi|306815623|ref|ZP_07449772.1| hypothetical protein ECNC101_03443 [Escherichia coli NC101]
 gi|305851285|gb|EFM51740.1| hypothetical protein ECNC101_03443 [Escherichia coli NC101]
          Length = 1107

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 74/224 (33%), Gaps = 21/224 (9%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
              +     +     +  ++    +  +      +QS+L   +  K    R       + 
Sbjct: 15  WGAYAATAPDSKQITQELEQAKAAKPAQPEVVEALQSALNALEERKGSLERIKQYQEVID 74

Query: 493 NHPAILQEQYQELADIRYDNNE-------LQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
           N+P +      +L ++R D             L   +     +      +   ++   R 
Sbjct: 75  NYPKLSATLRAQLNNMR-DEPRSVSPGMSNDALNQEILQISSQLLDKSRQAQQEQERARE 133

Query: 546 FGELLKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKE 596
             + L QL +Q  DA       E           +   +    Q+ ++  +  +   +  
Sbjct: 134 IADSLNQLPQQQTDARRQLNEIERRLGTLTGNTPLNQAQNFALQSDSVRLKALVDELELA 193

Query: 597 EI----EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           ++     +++A++ ++   +++  L + L  +  Q++    QEA
Sbjct: 194 QLSANNRQELARLRSELAEKESQQLDAYLQALRNQLNSQRQQEA 237


>gi|301800167|emb|CBW32772.1| putative chromosome partition protein [Streptococcus pneumoniae
           OXC141]
          Length = 1179

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E  +E A +  +   L+ L   +       +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAEEEASLGSEEVALKTLQDEMARLTESLEAIKSQGEQARIQEQGLSLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  I  + +G  QA      +R   ++  K+ +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEEIDRLSEGDWQADKEKCQERLAAIASDKQNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 833


>gi|260771705|ref|ZP_05880624.1| hypothetical protein VIB_000144 [Vibrio metschnikovii CIP 69.14]
 gi|260613289|gb|EEX38489.1| hypothetical protein VIB_000144 [Vibrio metschnikovii CIP 69.14]
          Length = 538

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 54/145 (37%), Gaps = 3/145 (2%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           +    +  +   E+A      ++ + +     +    QK  + +E  Q   E+   E ++
Sbjct: 175 VQSLNVCNDYLDEIASN--TASKHETVRKQFEALTRSQKQLVEKESKQEKAEKTLEERIE 232

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQVTAKGE 610
              ++  +        E+   ++    ++A+ ++K     L  +K  +EK++ + +    
Sbjct: 233 AQQKKHEERLEKMKLRESAQDEILAELERAIDVHKECLSELETRKANLEKELNERSQLKL 292

Query: 611 AEKTAILISILHEVHIQIHQIESQE 635
            E        L ++  +   +  QE
Sbjct: 293 TELEERNKVTLQQLKAEFEALWQQE 317


>gi|148686914|gb|EDL18861.1| golgi autoantigen, golgin subfamily a, 5, isoform CRA_a [Mus
           musculus]
 gi|148686915|gb|EDL18862.1| golgi autoantigen, golgin subfamily a, 5, isoform CRA_a [Mus
           musculus]
          Length = 735

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 80/269 (29%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD----QKLRYYYSQAIRDRLQ 433
           +      + K   +            LE         ++D      L+    Q +++RL 
Sbjct: 300 AKDSQLAVLKVRLQEADQVLSSRTEALEALRSEKSRIMQDHKEGSSLQNQALQTLQERLH 359

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 360 EADATLKREQESYKQMQSEFA---------ARLNKMEVDRQNLAEAVTLAER-------K 403

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    ++  +    ++   + L+     L     +        E++   L E    E L+
Sbjct: 404 YSEEKKKVDELQQQVKLHRSSLESAKQELVDYKQKATRILQSKEKLINSLKEGSSFEGLE 463

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 464 SSTASSMELEELRHEKEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEAESAREQLQDLQD 523

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   +E
Sbjct: 524 QIAKQRTSK--QELETELERMKQEFRYME 550



 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 95/255 (37%), Gaps = 12/255 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSG 445
            E +       +   +++      +N +  +  R   ++A  + +R     +K + E   
Sbjct: 359 HEADATLKREQESYKQMQSEFAARLNKM--EVDRQNLAEAVTLAERKYSEEKKKVDELQQ 416

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             +  + +     Q+    +   + +++ K     SL+E +    L +  A   E  +  
Sbjct: 417 QVKLHRSSLESAKQELVDYKQKATRILQSKEKLINSLKEGSSFEGLESSTASSMELEELR 476

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +      E+QKL   +     E +    +++ +        E L+ L  Q+        
Sbjct: 477 HEKEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEA---ESAREQLQDLQDQIAKQRTSKQ 533

Query: 566 TTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             E  +  ++Q ++     L++    L  + ++ E++I ++  +   +  +       E+
Sbjct: 534 ELETELERMKQEFRYMEEDLHRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNSSQ--SEL 591

Query: 625 HIQIHQIESQEAMIE 639
             ++HQ+   E +I+
Sbjct: 592 ESRLHQL--TETLIQ 604


>gi|299140812|ref|ZP_07033950.1| replicative DNA helicase [Prevotella oris C735]
 gi|298577778|gb|EFI49646.1| replicative DNA helicase [Prevotella oris C735]
          Length = 508

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 52/175 (29%), Gaps = 12/175 (6%)

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            + +     +         G L  + +  E A++  L+          + +    +    
Sbjct: 4   NNSNTVRRRKSSANVDNAYGHLQPQATDIERAVIGALMIDKDAFSLISEIIRPETFYEPR 63

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE-------LLKQLDRQVRDAGLWSATT 567
            QK++  + +  + ++      + ++L   G  +       LL   DR    A +     
Sbjct: 64  NQKIYQAIQNLNMSERPVDIMTVTEQLKSEGTIDDIGGPGYLLDISDRVASSANVEYHAH 123

Query: 568 EANIVDVRQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
                 + +   Q         +     +    +E E  + +++ K   +    +
Sbjct: 124 ILAQKFLARQLIQFASRVEEKAFDDTVDVDVLMQEAEGSLFEISQKNMKQDYTQI 178


>gi|281425626|ref|ZP_06256539.1| replicative DNA helicase [Prevotella oris F0302]
 gi|281400213|gb|EFB31044.1| replicative DNA helicase [Prevotella oris F0302]
          Length = 508

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 52/175 (29%), Gaps = 12/175 (6%)

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            + +     +         G L  + +  E A++  L+          + +    +    
Sbjct: 4   NNSNTVRRRKSSANVDNAYGHLQPQATDIERAVIGALMIDKDAFSLISEIIRPETFYEPR 63

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE-------LLKQLDRQVRDAGLWSATT 567
            QK++  + +  + ++      + ++L   G  +       LL   DR    A +     
Sbjct: 64  NQKIYQAIQNLNMSERPVDIMTVTEQLKSEGTIDDIGGPGYLLDISDRVASSANVEYHAH 123

Query: 568 EANIVDVRQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
                 + +   Q         +     +    +E E  + +++ K   +    +
Sbjct: 124 ILAQKFLARQLIQFASRVEEKAFDDTVDVDVLMQEAEGSLFEISQKNMKQDYTQI 178


>gi|228473439|ref|ZP_04058192.1| ATP-dependent chaperone protein ClpB [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228275046|gb|EEK13849.1| ATP-dependent chaperone protein ClpB [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 861

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/280 (8%), Positives = 77/280 (27%), Gaps = 38/280 (13%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  +++  +DM              +    +   + +   +I        
Sbjct: 220 RIVNGDVPENLKDKTIYSLDMGALIAGAKYKGEFEERLKSVVKEVTSSDGNI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGGGEGAMDAANILKPALARGELRAIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      ++  P                      +   +   +             R+ +
Sbjct: 328 ERRFQKVMVEEPD---------------TESAISILRGIKEKYEAHHKV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + +  L     +       +   +  +  +   +L R+  ++E +I 
Sbjct: 366 EAIIAAVELSERYIPNRYLPDKAIDLMDEAAAKLRMEINSKPEELDVLDRKIMQLEIEIE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI----ESQEAMIE 639
            +  + + EK  +L + +  +  + + +    + ++ +++
Sbjct: 426 AIKRENDEEKLRMLNAEVGNLREERNALFTKWQGEKTLVD 465


>gi|224134631|ref|XP_002321870.1| predicted protein [Populus trichocarpa]
 gi|222868866|gb|EEF05997.1| predicted protein [Populus trichocarpa]
          Length = 251

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 48/126 (38%), Gaps = 11/126 (8%)

Query: 517 KLWSFLFSDFVEQKYFLPE----EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
           +L  ++  ++ + +    E        +L        L+ L +++  +       +    
Sbjct: 31  QLRKYIEENYSKIRDVERELGNLTFEMKLTAGPKKAALEHLRKKIEMSTERIRVAKLKEE 90

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           + R+  + A         + +++EEI++++ +   +   E +    S L E+  ++  + 
Sbjct: 91  EARKALEAATK-------VVKEEEEIKQKLCEDLNQLVQESSHSQFSRLEELKRRLEALN 143

Query: 633 SQEAMI 638
              A +
Sbjct: 144 PSRASM 149


>gi|149002615|ref|ZP_01827547.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP14-BS69]
 gi|237649947|ref|ZP_04524199.1| hypothetical protein SpneC1_04341 [Streptococcus pneumoniae CCRI
           1974]
 gi|237822504|ref|ZP_04598349.1| hypothetical protein SpneC19_09414 [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147759226|gb|EDK66219.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP14-BS69]
 gi|332200694|gb|EGJ14766.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA41317]
          Length = 1179

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 4/143 (2%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E  +E A +R D   L+ L   L       +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAEEEASLRSDEVSLKNLQDELARLTERLEAIKSQGEQARIQEQGLSLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  +  + +G  QA      +R   ++ +K  +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEELNRLSEGEWQADKEKCQERLTTITSEKNNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQ 634
           E+   L   L +  +   +++ Q
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQ 821


>gi|119573381|gb|EAW52996.1| lamin A/C, isoform CRA_a [Homo sapiens]
          Length = 698

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 219 DSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTAL 278

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ + ++   + 
Sbjct: 279 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 334

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 335 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 380

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 381 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 437

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 438 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 491

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 492 KLALDMEIHAYRKLLEGEE 510


>gi|78224047|ref|YP_385794.1| AAA ATPase [Geobacter metallireducens GS-15]
 gi|78195302|gb|ABB33069.1| AAA ATPase [Geobacter metallireducens GS-15]
          Length = 864

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 77/211 (36%), Gaps = 15/211 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R +++          +  +++    K +      ++++A++       
Sbjct: 321 YRKYIEKDAALERRFQQVYTGEPSVEDTIAILRGLKEKYETYHGIRIKDSAIIAAATLSD 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S   E      + I   + ++        L  
Sbjct: 381 RYITDRFLPDKAIDLIDEAASRLRIEIDSMPTEIDEVERKIIQLEIEKQAL------LRE 434

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ-------VTAK 608
           Q   A          +  ++    +  A +++ + + +   E+++Q+ +          +
Sbjct: 435 QDPHALERLQKLTDELNGLQAQAAELKAHWRQEKEIIKGLSELKQQLEERKEQAKKAERE 494

Query: 609 GEAEKTAIL-ISILHEVHIQIHQIESQ-EAM 637
           G   +TA +    +  +  ++ + + Q EA+
Sbjct: 495 GNLARTAEIRYGEIPAIEKEMEEKKQQLEAL 525


>gi|320163201|gb|EFW40100.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 521

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 80/237 (33%), Gaps = 23/237 (9%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + D L    Q   ++           A        + +L          + +    E  
Sbjct: 151 RVHDLLSSSRQSTRSDPVATPHPSTARAARTASTTSTAQLDNPPTPAPVFANQAHASETP 210

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-EIHQRLCERG 545
            +  ++  P   + Q   +      +      ++  F    +  +   E + ++R   RG
Sbjct: 211 QIPAVLFTPHSAKRQQHPVGPTDDLHESFGASFNT-FDTAHQHPFLDQENQENERSFNRG 269

Query: 546 FGELLKQL----------------DRQVRDAGLWSATTEANIV--DVRQGYQQALALYKR 587
             +LL+++                DRQ  +  L      A      + Q Y +   L ++
Sbjct: 270 HAQLLQRIHALEDMQAEVITNASHDRQQAEQLLREQHHSATQAHAQLEQAYDEMEHLRRQ 329

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS-ILHEVHIQIHQIESQ--EAMIEGF 641
              L +++++ + ++ Q+      EK   L +  L ++ + + Q  +Q   A++E F
Sbjct: 330 LAQLHQERDDAQSKVFQLEDLLAREKAEQLENIRLSKIALDLQQRNAQLRAALVERF 386


>gi|320109104|ref|YP_004184694.1| ATP-dependent chaperone ClpB [Terriglobus saanensis SP1PR4]
 gi|319927625|gb|ADV84700.1| ATP-dependent chaperone ClpB [Terriglobus saanensis SP1PR4]
          Length = 869

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/209 (11%), Positives = 71/209 (33%), Gaps = 16/209 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++KYI + +   R ++           +  +++    + +      +++AA++    ++H
Sbjct: 322 YRKYIEKDAALERRFQVVYVGEPNVEDTINILRGLKERYEAHHNVRIKDAAIVAAAELSH 381

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +     L   + S  VE            +             
Sbjct: 382 RYISDRFLPD-KAIDLVDEAAASLAIQIGSVPVEIDALERRATSLEIERTALKR------ 434

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            +  ++    A  E  + ++++      A ++R R       E++K+I  +  + E +  
Sbjct: 435 EEDVNSRERFAVVEKELAELQEQASGLRARWQRERDAITLIAELKKKIEALRFEAEDQTR 494

Query: 615 AILISILHEVH--------IQIHQIESQE 635
              +    ++          ++ Q+E+ +
Sbjct: 495 RGNLERAAQIQYSDLPRAEAELRQLEATQ 523


>gi|301770601|ref|XP_002920719.1| PREDICTED: cingulin-like protein 1-like [Ailuropoda melanoleuca]
          Length = 1295

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 88/278 (31%), Gaps = 10/278 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y +    +L      L +   + E    +     +   L           +D+ 
Sbjct: 966  QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTTMKLQDEMRLMEEELRDYQRAQDEA 1025

Query: 420  L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L  R    Q ++D   +L  K   +        +   +    +   +    +S +  +  
Sbjct: 1026 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERI 1085

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLP 534
             +   +   +   L+   A+ Q+   +   +   N +L+     L   +    E      
Sbjct: 1086 TRSREQLEQMRSELLQERAVKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQM 1145

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLL 591
            E     L +R   E   +   Q  +  L     E  +    +      Q   L  R + +
Sbjct: 1146 EARIAELEDRLESEERDRASLQFSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAM 1205

Query: 592  SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             RQ EE E++I ++ +    +K    +    +V+ Q+ 
Sbjct: 1206 KRQVEEAEEEIDRLESS--KKKLQRELEEQMDVNEQLQ 1241



 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 94/260 (36%), Gaps = 24/260 (9%)

Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
               N  +ER  + + L+        +       Q    RL++   +         +   
Sbjct: 629 KNQQNMKEERERMRVSLEELQGQHDSKVEENSVLQ---QRLEKSEGELRKNLEELFQVKM 685

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA-ALLLTLINHP----AILQEQYQELA 506
           +  +H+ Q    Q  +     +   +K+   RE  AL+  L+        +L  + ++  
Sbjct: 686 EREQHQTQIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQED 745

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            +R    EL  L   L  +         +++ ++  +     L + ++   ++  + ++ 
Sbjct: 746 LLRKRERELTALKGALKEEVASH-DLEMDKLKEQY-DAELQVLRESVEEATKNVEVLASR 803

Query: 567 TEANIV-------DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
           +  +          V+   ++   L +    L +    +++QIA V  KG+  K   +  
Sbjct: 804 SNTSEQSQLGAELHVKALQEEKEKLRESIEELEQSVTRLQRQIADV--KGDEAKAKEM-- 859

Query: 620 ILHEVHIQIHQIESQEAMIE 639
            L E   +  Q+E  EA+++
Sbjct: 860 -LKECERESRQLE--EALVQ 876



 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 86/249 (34%), Gaps = 12/249 (4%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           +++ +L   +      ++ +       +  R+R++   ++   +H           +  +
Sbjct: 608 EQKNKLTAEVAELQRQLQLEVKNQQNMKEERERMRVSLEELQGQHDSKVEENSVLQQRLE 667

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +     R     L + K+ ++    +   L        + +   +  +  R ++ E   L
Sbjct: 668 KSEGELRKNLEELFQVKMEREQHQTQIRDLQ-----DQLSEMHDELDSAKRSEDREKGAL 722

Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
              L     + +  L  +  Q    R  ER    L   L  +V    L     +      
Sbjct: 723 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVASHDLEMDKLKEQYDAE 782

Query: 575 RQGYQQALALYKRFRLL--SRQKEEIEKQI-AQVTAKGEAEKTAILISILHEVHIQIHQI 631
            Q  ++++    +   +  SR     + Q+ A++  K   E+   L   + E+   + ++
Sbjct: 783 LQVLRESVEEATKNVEVLASRSNTSEQSQLGAELHVKALQEEKEKLRESIEELEQSVTRL 842

Query: 632 ESQEAMIEG 640
           + Q A ++G
Sbjct: 843 QRQIADVKG 851


>gi|242237925|ref|YP_002986106.1| hypothetical protein Dd703_0473 [Dickeya dadantii Ech703]
 gi|242129982|gb|ACS84284.1| MscS Mechanosensitive ion channel [Dickeya dadantii Ech703]
          Length = 1104

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           KD   +    + ++  L+ L ++  T           +   R  +   Q+LM        
Sbjct: 39  KDAPGQADIVRELQSALRLLDERRETRQRADQYQRIIDDFPRLMQDLRQQLMAEENKPPS 98

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           L K  S+ E      ++   + L EQ ++L   +   + L+++   L     +Q      
Sbjct: 99  LPKTQSVNELE--QLIVQFGSQLLEQSRQLQQEQ---DRLREISDSLTQLPQQQTEANRA 153

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                         L  ++R+V+  G  +           Q              L +  
Sbjct: 154 --------------LSDVERRVQALGSPTTALGQAQAAALQTELSLRKSRVNELELEQLS 199

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               ++++++ A    ++   L + L  +   ++ +  +EA
Sbjct: 200 ASNRQELSRLRADLYKKRRDRLDNQLQALRSTLNTLRQKEA 240


>gi|226313208|ref|YP_002773102.1| chromosome partition protein SMC [Brevibacillus brevis NBRC 100599]
 gi|226096156|dbj|BAH44598.1| chromosome partition protein SMC [Brevibacillus brevis NBRC 100599]
          Length = 1190

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 14/139 (10%)

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
           +++L   L     EQ+    E    RL E+    LL+Q + + R  G  +   E +I   
Sbjct: 701 MEQLTKELAQMQQEQEALRTEGESLRLKEQEVKGLLQQKESEGRSLGERAKLVEQDIESY 760

Query: 575 RQGYQQALALYKRFR----LLSRQKEEIEKQIAQVTAK-----GEAEKTAILISILHEVH 625
           R+  ++A    ++ +     + ++++E+ +QIA+  AK        E+    I+ L  ++
Sbjct: 761 RREMEEAKRKQEQLQTSLTAMEQEEKELSEQIAEAEAKRQEQLESKEEMNQKITSLKVLN 820

Query: 626 IQIHQ-----IESQEAMIE 639
            Q+ Q     +E  E ++E
Sbjct: 821 AQVKQEYQSRLEQTERLLE 839


>gi|171689886|ref|XP_001909882.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944905|emb|CAP71016.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1341

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 90/281 (32%), Gaps = 12/281 (4%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
                    K+ +E+L       + E E       +    +    +     ++ ++    
Sbjct: 409 MAEETAEVLKVELEALKQKSEELELEVEILREENAEFTKGMSTEERASTGWLQMERNNER 468

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             +A+  RL+ L Q+   E     +  +++ R  +         +  L + ++     LR
Sbjct: 469 LKEALI-RLRDLSQEQEEELKDQIKGLEEDLREFETMKEQFAATKEKLAQAEV-AVEDLR 526

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E   L   +    ++++  +E  +   +  EL+ +   L S            +      
Sbjct: 527 EQ--LNNALGAEDLIEKITEENMNQAEEIKELRAVIDDLESLKEINDELEINHVQNEKEM 584

Query: 544 RGF----GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL----LSRQK 595
           +        ++ +  RQ           E  +   R+         +  R        + 
Sbjct: 585 QEELDLKDAIISEQMRQANVQRESMEDMEYTLSRFRELVTSLQNDLEDMRASHAVTENES 644

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           E++  +   +       + +   + +  + +++ ++E+QEA
Sbjct: 645 EQLNNRSRAMMDLNMKLQISAAKAQVKTIDLELRRMEAQEA 685


>gi|160933394|ref|ZP_02080782.1| hypothetical protein CLOLEP_02239 [Clostridium leptum DSM 753]
 gi|156867271|gb|EDO60643.1| hypothetical protein CLOLEP_02239 [Clostridium leptum DSM 753]
          Length = 563

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/272 (10%), Positives = 80/272 (29%), Gaps = 9/272 (3%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D         AF  L +  +            N+S              ++      D  
Sbjct: 221 DEGFTSRRGNAFNVLTIRHILENPKYKGWYCANKSQTVDYRSKRKIFLEEDEWIMYPDPS 280

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           +    S+ + DR   L+++   +   +    + + R+            +S  +      
Sbjct: 281 IPAIVSEELWDRANALYKRRRQQMLSHQNAAEFHNRYPYSGKIICEEHGTSFHRQVRKSM 340

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +EA                    +  +    EL ++ + +F    + K  + E + +
Sbjct: 341 KGEKEAW------QCRVYRNRGRAGCSAPQLLTEELDQIMARIFDQLAQDKQAIVEAVVK 394

Query: 540 RLCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            +       +  + + R   +        +  +    +         +R    ++Q +E+
Sbjct: 395 IIRSVPNELDYQQDIRRIAEEISAIIWKKDRLLEMSIERALSTTEFKQRNERFNQQLQEL 454

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           E+Q   +  + +  K +  +  L ++   + +
Sbjct: 455 ERQKRSLELEKDKSKIS--VDQLSKIKTALEE 484


>gi|148985142|ref|ZP_01818381.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922587|gb|EDK73705.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP3-BS71]
          Length = 1179

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E  +E A +  +   L+ L   +       +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAEEEASLGSEEVALKTLQDEMARLTESLEAIKSQGEQARIQEQGLSLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  I  + +G  QA      +R   ++  K+ +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEEIDRLSEGDWQADKEKCQERLAAIASDKQNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 833


>gi|326665652|ref|XP_001920098.3| PREDICTED: myosin-9, partial [Danio rerio]
          Length = 1690

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 93/275 (33%), Gaps = 28/275 (10%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                   +   EK+ ++     +M    E +        ++ ELE  L +    +++++ 
Sbjct: 873  EMEVKQQQLNAEKMALQEQLQAEMDLCAEADEMRNRLVAKKQELEEILHDLEARVEEEEE 932

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R  + QA + ++QQ       +        +K    +       +  +  ++        
Sbjct: 933  RANHLQAEKKKMQQNIADLEQQLDEEEAARQKLQLEKVTMEAKLKKTEEEVMVLDDQNNK 992

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              +E  L+         + E    LA+    +  LQKL +            +  ++  R
Sbjct: 993  LSKEKKLME------ERIAEFTTNLAEEEEKSKSLQKLKNK--------HEAMITDLEDR 1038

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            L         ++L++  R              D  + + Q   L  +   L  Q  + E+
Sbjct: 1039 LRREEKQR--QELEKNRRKLE----------GDSTELHDQIAELQAQIAELKAQLAKKEE 1086

Query: 601  QIAQVTAKGEAEKTAILISI--LHEVHIQIHQIES 633
            ++ +  A+ E E     ++   + E+  Q+ +++ 
Sbjct: 1087 ELQEALARIEEEAAQKNLAQKKIRELESQLSELQE 1121


>gi|321260000|ref|XP_003194720.1| hypothetical protein CGB_F2190C [Cryptococcus gattii WM276]
 gi|317461192|gb|ADV22933.1| hypothetical protein CNBF1510 [Cryptococcus gattii WM276]
          Length = 1652

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 81/282 (28%), Gaps = 34/282 (12%)

Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438
               ++   +     +    +  AEL           +D+  R                 
Sbjct: 580 RSGPNVKIHKHLNEMNKQLLEANAELAREA----EAWRDEVERLQDILHQAGIDPDDAGS 635

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA----------LL 488
                S        + R       S      S    ++  + S+R             LL
Sbjct: 636 QNGARSNRSGSQSHSHRLPTPPHHSPSRNPGSSDHSEIIAQLSMRSRQSDSPSKNAQDLL 695

Query: 489 LTLI--NHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIHQRLCE 543
             L      A++QE  + L  +  +    +++ + L        + +    + +H+++ E
Sbjct: 696 NGLSPEERAAVVQEMAERLEVLEEEMKTKEEVIAELQEKLEYAHQSQSPDVQSLHEQIEE 755

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 L++ ++      L S  ++       +  +       + + L +      ++  
Sbjct: 756 --LARQLEETEQA--RVDLQSEFSKKTEEHAIKFTEICSGFESQVKTLEKDLASAREEAD 811

Query: 604 Q-----------VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +              KG +++   L     E+ +++  I+ Q
Sbjct: 812 RLRAERTRLEGSAEKKGSSDREEELRKQAREMEVELEAIKGQ 853



 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 72/227 (31%), Gaps = 27/227 (11%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
             + R    Q + +RL+ L ++  T+        +K       + P  + +   + +   
Sbjct: 699 SPEERAAVVQEMAERLEVLEEEMKTKEEVIAELQEKLEYAHQSQSPDVQSLHEQIEELAR 758

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             + + +    L                 ++      E    ++ + S F  Q   L ++
Sbjct: 759 QLEETEQARVDLQ----------------SEFSKKTEEHAIKFTEICSGFESQVKTLEKD 802

Query: 537 IHQRLCERG-FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +     E         +L+      G  S   E      R+   +  A+  + + +  + 
Sbjct: 803 LASAREEADRLRAERTRLEGSAEKKG-SSDREEELRKQAREMEVELEAIKGQAKEMHEEV 861

Query: 596 EEIEKQIAQVTAK--------GEAEKTAILISIL-HEVHIQIHQIES 633
            E++ QI  +  +         +AE+       L  +   ++ + E+
Sbjct: 862 GELKDQIQSLNKEKEEAIKKFEDAERRVEEHQKLHQDSERRVERAEN 908



 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 87/269 (32%), Gaps = 11/269 (4%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
              E +  ++  + + +   E +++  +   E+ E     ++    +++ +  +  S+   
Sbjct: 846  ELEAIKGQAKEMHEEV--GELKDQIQSLNKEKEEAIKKFEDAERRVEEHQKLHQDSERRV 903

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            +R +   +    E                Q       +     + +        E   L 
Sbjct: 904  ERAENDLEILGAELKQASSAQLAVEAKLAQYEKELEKLDQLHEEKEKQLDQQQNEIQELS 963

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD--FVEQKYFLPEEIHQRLCERGFG 547
             L+    + QE+    A+  +   EL+++   L      +E +     ++  +L      
Sbjct: 964  HLVQQLEVAQEKA---AESEWLKKELKRVQRELEDVHNLLEDREIQLGDLRVKLEVAEAN 1020

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            + L+   R+     L +     +    +      +AL  R     R+   ++++I     
Sbjct: 1021 KNLESSQRRSPSGTLTTPGQGDDGNAAQNSVV--IALEDRLDEAYREIGRLKREINTTPH 1078

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            +  A +     + +  +  +   +  + A
Sbjct: 1079 RKSAIEVRD--ARIQALEREKAALSDRLA 1105


>gi|301113282|ref|XP_002998411.1| myosin-like protein [Phytophthora infestans T30-4]
 gi|262111712|gb|EEY69764.1| myosin-like protein [Phytophthora infestans T30-4]
          Length = 1483

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 540  RLCERGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            R+ +    + + +   +++   A       E      R+  ++     +    ++R ++E
Sbjct: 1179 RIEKAERDDEIARARNEQEEEAARARKEQEEEIARARREQEEEIAQARREQEEIARARQE 1238

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             E++IA+   + + ++ A +      +  Q+ +++   + +E
Sbjct: 1239 QEEEIARARQERD-DEIARVRDENRRLKQQLAELQKANSELE 1279


>gi|121716020|ref|XP_001275619.1| dynactin, putative [Aspergillus clavatus NRRL 1]
 gi|119403776|gb|EAW14193.1| dynactin, putative [Aspergillus clavatus NRRL 1]
          Length = 1386

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 73/220 (33%), Gaps = 26/220 (11%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA-- 486
           R++++ L +             K  A+++ Q+     L +         ++    +A   
Sbjct: 356 REKMKTLERLQSERDKFEAIIQKLQAKYQPQQLEIGDLRKKLKETEAKLEEVERLQAEND 415

Query: 487 -LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            +L        + +E         + +         L    VE+     + + +      
Sbjct: 416 SILEMAALDREMAEETADA-----FRHE------CELLRARVEELQLELDILKEE----- 459

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-YKRFRLLSRQKEEIEKQIAQ 604
             E L Q       +       E     +R+   +   +  ++   L  Q +E+E+ +  
Sbjct: 460 -NEELGQTMSPEERSSHGWLQMEKTNERLREALIRLRDMTQQQESDLKDQIKELEQDLED 518

Query: 605 ---VTAKGEAEKTAILISI--LHEVHIQIHQIESQEAMIE 639
              + ++ E+ K  +L+S   + ++  Q+      E MIE
Sbjct: 519 YATIKSQYESTKEKLLVSEDNVEDLKQQLETALGAEEMIE 558


>gi|71422442|ref|XP_812134.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70876878|gb|EAN90283.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 507

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 63/204 (30%), Gaps = 24/204 (11%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
           + +     +     +      Q+   +   ++   +  +       E A L  L+     
Sbjct: 216 EVMLRARAFLDGEAQGLAAPWQQYTERDETETGNGRLAVENATLRNERAELQALLRERE- 274

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
            +   +++       +EL +L   L      ++     E+          EL   L  + 
Sbjct: 275 -EYFAEQI---ELKEHELTQLRRALQHAEANEEKLTEAEVR-------ITELESCLAEKE 323

Query: 558 RDAGLWSATTEANIVDVRQGYQQ-ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
            +  +W    + N ++  +  QQ  +  + R   L  +            +    +    
Sbjct: 324 EELYMWKENIDKNPLEASEKTQQMEMYFHARQEELCDRI----------ESPKNEDIINA 373

Query: 617 LISILHEVHIQIHQIESQ-EAMIE 639
           L   L E   ++ +++ Q EA  E
Sbjct: 374 LQRELSETQAKLREMQQQWEASRE 397


>gi|71407053|ref|XP_806020.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70869640|gb|EAN84169.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 456

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 10/130 (7%)

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
           KL + +     +++     E    +  R   +  +QL R+  +A + S      I D+ +
Sbjct: 263 KLRAEIEGLSFKERDLSQAEDEIEMERRIIKDRSEQLLRRNEEARVASEKARREIADLEK 322

Query: 577 GYQQ--------ALALYKRFRLLSRQKEEIEKQIA--QVTAKGEAEKTAILISILHEVHI 626
                          L +    +S +  EI  + A  +   + E EK   L   +  V  
Sbjct: 323 NLAAVRVRFESAEEVLLRTEERVSNEMAEISGRKANMEARVQQEREKVDRLQREMDRVRR 382

Query: 627 QIHQIESQEA 636
           Q+ Q+E  EA
Sbjct: 383 QLKQLEEAEA 392


>gi|332799725|ref|YP_004461224.1| ATP-dependent chaperone ClpB [Tepidanaerobacter sp. Re1]
 gi|332697460|gb|AEE91917.1| ATP-dependent chaperone ClpB [Tepidanaerobacter sp. Re1]
          Length = 863

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 77/208 (37%), Gaps = 12/208 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R ++    +      +  +++    + ++     +++ A++ +     
Sbjct: 324 YRKYIEKDAALERRFQPVMVNPPSVEDTISILRGLKERYEVFHGVRIKDNAIVASATLSD 383

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL-D 554
             + +++     I   +    +L + + S  VE      + I  ++ E    +   +   
Sbjct: 384 RYITDRFLPDKAIDLMDEAAARLRTEIDSMPVELDEIKRKIIQLQIEETALKKEKDEASL 443

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE----EIEKQIAQVTAKGE 610
           +++       +  +     +   +QQ      R   +  + E    EIEK       + +
Sbjct: 444 KRLEKIQEEMSKLQDEFDRLNVLWQQEKEEISRIHKIKSEIEKVKLEIEK----AEREYD 499

Query: 611 AEKTAIL-ISILHEVHIQIHQIESQEAM 637
             K A L    L+E+  Q+     +EA+
Sbjct: 500 LNKVAELKFGRLNELERQLKA--EEEAI 525


>gi|331266325|ref|YP_004325955.1| ABC transporter ATP-binding protein, ATPase components of ABC
           transporters with duplicated ATPase domains
           [Streptococcus oralis Uo5]
 gi|326682997|emb|CBZ00614.1| ABC transporter ATP-binding protein, ATPase components of ABC
           transporters with duplicated ATPase domains
           [Streptococcus oralis Uo5]
          Length = 633

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 59/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E ++  +    +     +    +    ++  ++A  L ++   L  + EE+E Q  
Sbjct: 532 KAEVEAIQTEEASTSNQAKEPSPVN-DYQTQKESQKEARKLMRQIESLEAEIEELETQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +AEK   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDAEKLMELQAELDKISHR-----QEEAMLE 625


>gi|326664838|ref|XP_003197898.1| PREDICTED: nucleoprotein TPR [Danio rerio]
          Length = 2341

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/258 (10%), Positives = 89/258 (34%), Gaps = 11/258 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           +    +      + ++L        + ++    RY   Q   +  ++  +     +    
Sbjct: 685 KLLNEQIERLRGQVSDLLSQKAKLSSQLEFASKRYDMLQENVNGFRRETEALRERNQKMS 744

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
              +++ +         R     L   +   +   +E  +L  + N    L ++ + +  
Sbjct: 745 ATHQRHEQIIHTMTQDLREANEKLTMSESRAENIRKERDILKQVENR---LNQEKESILT 801

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSA 565
            +   N L      +       +    +  + ++   E+   +L K+L+++V        
Sbjct: 802 EQRSQNLLLTNLKSIQLTMERSETETKQRYNNQIQHLEKEIIQLKKRLEQEVEQRHALER 861

Query: 566 TTEANIVDVRQGYQQALALYKRFRLL----SRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
             +  +++ ++  +   AL+++ + L     +Q   + +Q+     +  A          
Sbjct: 862 NQDTQLLEAKKKLESQTALHQKTKELLRSAEQQVTSLRQQLNNNENQISAPSVPQ--QEA 919

Query: 622 HEVHIQIHQIESQEAMIE 639
            ++  ++ Q+E Q + ++
Sbjct: 920 DDLRARLQQVEEQNSDLK 937


>gi|309361704|emb|CAP29640.2| hypothetical protein CBG_10142 [Caenorhabditis briggsae AF16]
          Length = 961

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 75/219 (34%), Gaps = 15/219 (6%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                R + +   ++  + +    R          +   +Q   ++   +  L  + + R
Sbjct: 620 MLDEARRKFEADVEQMKSNNQQVIRNHANTVESMQKAHETQNAEKNKESERNLEDERARR 679

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           EA +L     H  ++    +++A+      +L      L +          + + + +  
Sbjct: 680 EAEILAMNNRHQKVVACLDEKIAEAEKQCEQLSADKKTLQAALANDCDHRNQMLTKEISS 739

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                L   L+ +  +        +   + V +   + L + K     +  K+ ++++I 
Sbjct: 740 -----LQTALEMKSAEMKDLRQKNQNLSLQVDEIPLKELEISKWKHKSNEYKQMLDQKI- 793

Query: 604 QVTAKGEAEKTAILISILHEVHI-QIHQIESQEAMIEGF 641
                   EK   L+  + ++   QIH  E +EAM   F
Sbjct: 794 ------NGEKI--LVQQIEDLRRKQIHDEEEKEAMKRSF 824


>gi|296219575|ref|XP_002755952.1| PREDICTED: myosin-11 [Callithrix jacchus]
          Length = 1933

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 85/258 (32%), Gaps = 13/258 (5%)

Query: 387  KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD---RLQQLFQKYITEH 443
             +  E+    T + + + E  LK                Q        L    ++     
Sbjct: 861  MQAKEDELQKTKERQQKAENELKELEQKHSQLAEEKNLLQEQLQAETELYAEAEEMRVRL 920

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI-LQEQY 502
            +   +  ++     + +   +      L   +      + E  LL   I+     L E+ 
Sbjct: 921  AAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLERKLLEERISDLTTNLAEEE 980

Query: 503  QELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEIHQRLCERGFG--ELLKQLDRQVR 558
            ++  ++    N+ + + S L       E+     E++ ++L        E +  L  Q+ 
Sbjct: 981  EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDYHEQIADLQAQIA 1040

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
            +  +  A  E  +          +A   +     ++  E+E  I+ +    ++E+ A   
Sbjct: 1041 ELKMQLAKKEEELQAALARLDDEIA---QKNNALKKIRELEGHISDLQEDLDSERAARNK 1097

Query: 619  SILH--EVHIQIHQIESQ 634
            +     ++  ++  ++++
Sbjct: 1098 AEKQKRDLGEELEALKTE 1115


>gi|296193861|ref|XP_002744705.1| PREDICTED: centrosomal protein of 120 kDa isoform 2 [Callithrix
           jacchus]
          Length = 896

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 73/210 (34%), Gaps = 7/210 (3%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL-REA 485
            ++  L  L ++     S      ++    + ++  + + +Q S+ + K      +  E 
Sbjct: 621 KLQKTLIDLEKREQQLASAESELQREKKELQSERQRNLQELQDSIRRAKEDCIHQVELER 680

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             +  L           Q+L D       L+K +         +     +     L    
Sbjct: 681 LKIKQLEEDK---HRLQQQLNDAETKYKILEKEFQQFKDQQSNKPEIRLQSEINLLTLEK 737

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE+E+   + 
Sbjct: 738 V-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEELEQMRLRY 794

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQE 635
            A  E +        L ++  +++++  QE
Sbjct: 795 LAAEEKDTVKTEQQELLDIRNELNRLRQQE 824


>gi|168493168|ref|ZP_02717311.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC3059-06]
 gi|183576749|gb|EDT97277.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC3059-06]
          Length = 1179

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E  +E A +R D   L+ L   L       +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAEEEASLRSDEVSLKNLQDELARLTERLEAIKSQGEQARIQEQGLSLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  I  + +G  QA      +R   ++  K+ +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEEIDRLSEGDWQADKEKCQERLAAIASDKQNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 833


>gi|149371037|ref|ZP_01890632.1| hypothetical protein SCB49_05110 [unidentified eubacterium SCB49]
 gi|149355823|gb|EDM44381.1| hypothetical protein SCB49_05110 [unidentified eubacterium SCB49]
          Length = 281

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 56/149 (37%), Gaps = 8/149 (5%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS---DFVEQK 530
            +L+      +  LL   I  P  L+   +E+ +  +    L+ +   L +      ++ 
Sbjct: 85  KQLASVVEADQIELLKMAIKMPDALKTTREEIDENEFA-EILKAVKEALVAINVYRSDEG 143

Query: 531 YFLPEEIHQR--LCERGFGELLKQLDRQVRD--AGLWSATTEANIVDVRQGYQQALALYK 586
             L  +   R  + E    E+L+   +++ +    L +A  + +       ++Q L  Y 
Sbjct: 144 EVLKTDFLARVTIIENRLKEVLEIDSQRIANVKERLRTAVNDLHEKVDENRFEQELIYYL 203

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
               ++ +K  +E  +        ++++ 
Sbjct: 204 EKYDITEEKVRLENHLNYFREAINSDESN 232


>gi|115681514|ref|XP_797247.2| PREDICTED: similar to dystrobrevin alpha isoform 2 variant
           [Strongylocentrotus purpuratus]
 gi|115974595|ref|XP_001191124.1| PREDICTED: similar to dystrobrevin alpha isoform 2 variant
           [Strongylocentrotus purpuratus]
          Length = 727

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/115 (10%), Positives = 44/115 (38%), Gaps = 6/115 (5%)

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-----DVRQGYQQALA-L 584
               ++++  L      +  + + R        SA   +        D  +  ++ +  L
Sbjct: 346 EEDFKKMNNSLDSARLDDEHRLIARYAARLANASANPNSGPELPPGLDANREQRELIMQL 405

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             + R + R+ + + ++  +      +++   L++ L  +  +  ++E + A ++
Sbjct: 406 ESKNREIMREIQRLRQEHDEAVRSSHSQRNPTLLAELRLLRQRKDELELRMAALQ 460


>gi|47228568|emb|CAG05388.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1972

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 33/114 (28%), Gaps = 4/114 (3%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                  Q       + +   E     L ++L+    +              +     + +
Sbjct: 1337 IERLHCQLEDREARLLEA--ESIQKTLAQELENTQIELENICRQKSLVDEQLALLQHEKM 1394

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ--VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             L KR         E+ K+       +  +  +   L + L E+  Q H ++ Q
Sbjct: 1395 DLLKRVEEDQEDLNELMKKHKALIAQSSSDISQIRELQAELEEMKKQRHSLQEQ 1448


>gi|34558383|ref|NP_908198.1| RNA polymerase factor sigma-54 [Wolinella succinogenes DSM 1740]
 gi|34484102|emb|CAE11098.1| RNA POLYMERASE SIGMA-54 FACTOR [Wolinella succinogenes]
          Length = 420

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 57/199 (28%), Gaps = 4/199 (2%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           ++  L  L           G +  +N     Q      L      K       +     +
Sbjct: 17  LKSWLPILQSGLSDLEETLGEFTSENPYIEVQSKIETNLSSKIPKKSLERAPKNSLSEKI 76

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
               I   ++    Y+++A   +     QK+   +  +  E+ YF  E     L      
Sbjct: 77  EALTIQEDSLYDILYEQIAPPLFPTATSQKIALKIIENLNEEGYFEGEIEKIALECESSS 136

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E  +++ ++                DVR+ +   L   +    L     E+ +++   T 
Sbjct: 137 ESCEKIRQRFS----RLEPPGIGAKDVRESFLFQLDSSECDDELFSLVRELIEELEYHTR 192

Query: 608 KGEAEKTAILISILHEVHI 626
                +    + ++     
Sbjct: 193 YKNHPRYVEAMRLIRSFKN 211


>gi|67540306|ref|XP_663927.1| hypothetical protein AN6323.2 [Aspergillus nidulans FGSC A4]
 gi|40739517|gb|EAA58707.1| hypothetical protein AN6323.2 [Aspergillus nidulans FGSC A4]
 gi|259479461|tpe|CBF69703.1| TPA: P150 dynactin NUDM [Source:UniProtKB/TrEMBL;Acc:Q8J0T2]
           [Aspergillus nidulans FGSC A4]
          Length = 1267

 Score = 43.3 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 66/221 (29%), Gaps = 6/221 (2%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              +R +L+ + +K + +           A     +G    L        +   +   + 
Sbjct: 229 LDELRTKLKVMEKKRVEDREKLKDMEALQADRDKLRGIIHTLQVKYKPHERNLAELEAKL 288

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                 +     ++ E    +     D     ++      +    K  + E   +    R
Sbjct: 289 KEAEARVEELEKLIAEHESLMEIASLDREMAVEMADAHKLECETLKLRVEELELEVEVLR 348

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIA 603
              E   Q       +       E     +R+   +   + ++    L  Q +E+++ + 
Sbjct: 349 EENEEFGQTMSPEEKSSHGWLQMEKTNERLREALIRLRDMTQQQEAELKDQIKELQQDLE 408

Query: 604 QVTA-----KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              A     +   EK     S L EV  ++  +E  E ++E
Sbjct: 409 DYAAIRSKYEATKEKLMKSESNLQEVRERLETVEGNEQLVE 449


>gi|321257028|ref|XP_003193443.1| centromeric protein e (cenp-e protein),putative [Cryptococcus gattii
            WM276]
 gi|317459913|gb|ADV21656.1| centromeric protein e (cenp-e protein),putative [Cryptococcus gattii
            WM276]
          Length = 1799

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 95/325 (29%), Gaps = 20/325 (6%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
                   V   + +    + A +        +        +L     D  S         
Sbjct: 803  KAEIEHKVKLLEDEVAARKKAEEGEKAARKEVENIKSQLELLQKEHADIHSSAENASTRL 862

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E  I  S   V +      +       ++       +K   +    + L  +  +A+ +
Sbjct: 863  VEYEISISTLTVQINDLLSAKMSHETALEQLRNEHDEMKKQRDR-AAEDLESFQKEAMAN 921

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
              + L ++   E     R  +      D+          S  + +   K  L EA  L T
Sbjct: 922  EAKVL-RELREEIGNLRRLREDEEAVWDRSKAEMEARIESSQQDEAKSKAQLVEA--LKT 978

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER-GFGEL 549
            L +     +   ++L+         Q+     F    E       ++ Q +  R      
Sbjct: 979  LEHATQANRSLEEKLSCEAEGRRTAQEERDQAFEKIKEAAGGANAQLEQEIAARHELEIQ 1038

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
               L +Q+          ++   D+    +      +  + L+RQ +     I Q+  + 
Sbjct: 1039 FASLKKQL----------DSQRADIEALTRDLSKERQSAKELARQLD-----ITQIELEA 1083

Query: 610  EAEKTAILISILHEVHIQIHQIESQ 634
            +  +T   +    +V  ++ ++ES 
Sbjct: 1084 QEARTEKAVDEQKDVEKRLKEMEST 1108


>gi|309389347|gb|ADO77227.1| ATP-dependent chaperone ClpB [Halanaerobium praevalens DSM 2228]
          Length = 859

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 70/206 (33%), Gaps = 11/206 (5%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
           K+I + +   R ++           +  +++    K ++     + + A++         
Sbjct: 323 KHIEKDAALERRFQPVQVAEPDLEDTVSILRGLKEKYEIHHGIKITDNAIVAAAKLSDRY 382

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP-----EEIHQRLCERGFGELLKQ 552
           L E++     I   +    K+   + S  +E           E   + L      E  ++
Sbjct: 383 LTERFLPDKAIDLIDEAASKIRIEIDSMPIEIDELDRRVRRLETEKEALKNENTDEAQER 442

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           L     +        +     +R  ++       + + L  + ++IE Q      +   E
Sbjct: 443 LKEIEENLQNLKDKRD----PLRLKWKNEKDQLAKMQELKEKIDQIEYQAEAAEREANYE 498

Query: 613 KTAIL-ISILHEVHIQIHQI-ESQEA 636
           + A L    L+E+  ++ ++ +  EA
Sbjct: 499 EAARLRYGKLNELRKELAEVSQKVEA 524


>gi|238881346|gb|EEQ44984.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 2139

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/290 (10%), Positives = 81/290 (27%), Gaps = 28/290 (9%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLW--KRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
                   +    K+  +   L +              +  +     + + K     +K  
Sbjct: 770  ETKLEDKEQELAKIQEDHKSLNEKFLVTTNSLSAMKASKKEFETASQKYQKELQEALKKG 829

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                   + ++++L    Q       G     +     +               K +   
Sbjct: 830  NTSESTLKQLKEKLDSTEQAKKKLEDGINNMTRDLFHLKKS-------------KSEAET 876

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPE 535
            +   RE              ++   ++ ++   NNE ++  + L        E      +
Sbjct: 877  QIKQREREFKNLTYELENTKKDYELQINNLNKSNNEFKQKINELSKKIESLTEDNKSNAK 936

Query: 536  EIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            ++ ++L +       L+ +L                +  +  +  ++   L  +   L +
Sbjct: 937  QLEEKLRDTEENNEHLMDKLRSASVAYNDLKKAKSESEEETVKAKEELETLTSKIDNLEK 996

Query: 594  QKEE-------IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            + +E       +E Q+  +T     EK   L   L  +     +I SQ +
Sbjct: 997  ELKEQQSKKNELEGQLQNITDSTN-EKFKELEDELKSIKKSNKEISSQNS 1045


>gi|242007443|ref|XP_002424549.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212507992|gb|EEB11811.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 2452

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 87/277 (31%), Gaps = 15/277 (5%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               +   +   +   ++      +    +   ++    ++   +E ++K+C   I+  +
Sbjct: 703 SEIAKIEKRFEEQIHSLKKESNDLIYKNSKLVAQAEFNEEKFKVMESNIKSCKKQIEALE 762

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R      I  + +Q       E         K     +       L++++  + +   +
Sbjct: 763 KRNLMLSEISAKHEQSTIHLRDEVMQLQSSLSKAEVALENLKHENFLLKTTEARLQKENE 822

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              RE      L+++   ++  ++        + E  KL        +         +  
Sbjct: 823 CFNREKHSHSLLMSNLDAIKATFER-------SEEEGKLR---LEAQLSDTVKECTALKS 872

Query: 540 RLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            L E    F EL   L+RQ   A       +      R+   Q   + +   L +++ EE
Sbjct: 873 ALKEEKTRFKELAASLERQTAIAKERMLEEKKLAEKARE---QLEIVNQELELKNKKIEE 929

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +  +I ++           +   L E   +  ++E  
Sbjct: 930 LSLKIRELNNLPTKNVIESVSVNLDESTKKNKELEKT 966


>gi|149918714|ref|ZP_01907202.1| serine/threonine kinase family protein [Plesiocystis pacifica
           SIR-1]
 gi|149820555|gb|EDM79969.1| serine/threonine kinase family protein [Plesiocystis pacifica
           SIR-1]
          Length = 983

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 82/281 (29%), Gaps = 7/281 (2%)

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G D +     +      +L        +  ++R  E +     DE  E+ + L N     
Sbjct: 656 GGDLELRALLFNNAGTIRLAAGQRRAAEDDFERALELKRQALGDEHLEIAVGLANLSMLS 715

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                R    + + D  +                         +       +   +    
Sbjct: 716 DVPAERRALQEQMLDIYEDRLGPEHPRTLDARLLTALFTEEPARASAELAALCPLVAAAD 775

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            ++     E A L  L      L++  +  A ++        +   L   +        +
Sbjct: 776 ETRLTVDCERA-LGQLAYFRGDLEQAERSFAKLQSAAPPASSVL-PLADAYAALSDVDGD 833

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + ++         + ++D +      W+   +A    V     +     +  R L R+ 
Sbjct: 834 HVPKQ-AYAELSATVARIDGESGREPWWTRLEQAERRAVLAALLRTWPELEADRALERRL 892

Query: 596 EEIEKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIES 633
            E+E+ +A++ +        +   L++    V + +  +E+
Sbjct: 893 VELERALAELESLRSDAQPIEYERLLA-YTRVELALALLEA 932


>gi|114764060|ref|ZP_01443299.1| hypothetical protein 1100011001333_R2601_15417 [Pelagibaca
           bermudensis HTCC2601]
 gi|114543418|gb|EAU46433.1| hypothetical protein R2601_15417 [Roseovarius sp. HTCC2601]
          Length = 867

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 54/151 (35%), Gaps = 18/151 (11%)

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEA 569
           + +  ++   ++   +  +        +RL   +    E +K    +   A L     EA
Sbjct: 474 DEQQAEIAKAMWDLAIILEEGDLASALERLQRAQERLSEAMKNGASEQEIAELMQELREA 533

Query: 570 NIVDVRQGYQQAL-------ALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILIS 619
               +RQ  +QA         + +    +   K ++++   +I ++  +G   +    + 
Sbjct: 534 TDDYLRQLSRQAQQQAEQNPEMAQSQDSMEMSKNDLQRMMDRIQELMEEGRMAEAQEALR 593

Query: 620 ILHEVHIQIHQIESQ------EAMIEGFGKM 644
            L E+   +   + Q      E  +EG G+ 
Sbjct: 594 QLQELMENMQVTQGQQGQSPGEQAMEGLGET 624


>gi|73955671|ref|XP_860825.1| PREDICTED: similar to myosin, heavy polypeptide 10, non-muscle
            isoform 7 [Canis familiaris]
          Length = 2006

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 83/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + R +L   ++     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1421 EEARKKLLKDVEALGQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQIASNLEKKQ 1480

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1481 KKFDQLLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALETKEEFERQ 1535

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1536 NKQLRADMEDLISSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1595

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1596 EVNMQAMKAQFERDLQTRDEQNEEKKRLLVKQVRELEAELEDERKQRALAVASKKKLEID 1655

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1656 LKDLEAQIEA 1665



 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 906  EEMERKHQQLLEEKNILTEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 965

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 966  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1025

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1026 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1079

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +        
Sbjct: 1080 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKVQLAKKE---EELQGALARGDDETLHK 1136

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1137 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1184


>gi|22297929|ref|NP_681176.1| hypothetical protein tll0386 [Thermosynechococcus elongatus BP-1]
 gi|22294107|dbj|BAC07938.1| tll0386 [Thermosynechococcus elongatus BP-1]
          Length = 306

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 21/137 (15%)

Query: 524 SDFVEQKYFLPEEIHQRL-CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            D +E       E+   L  +     L  +L+     A   +     ++          L
Sbjct: 12  DDLLENIISDLGELEASLPQDIDLNSLTAELESLTLTAQQRAIAQNQSLEAQISQLTAEL 71

Query: 583 ALYKRFR-LLSRQKEEIEKQ---IAQVTAKGEAEKTAILISI----------------LH 622
              ++ R  LS+  E + ++   +  +    E E    LI                  + 
Sbjct: 72  NNVQQQRDHLSQDLERLREENDTLRGLRQNLEQELAQALIQQDELQQQLATLQLQASQVQ 131

Query: 623 EVHIQIHQIESQEAMIE 639
           E+  Q+  +++++A +E
Sbjct: 132 ELQAQLTALQTEKAALE 148


>gi|326479262|gb|EGE03272.1| hypothetical protein TEQG_02306 [Trichophyton equinum CBS 127.97]
          Length = 2406

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 78/232 (33%), Gaps = 32/232 (13%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    Q +  + QQ   +         +   +  R R      + L    L K ++ K+ 
Sbjct: 934  RDEKIQQLEAKAQQDIAERQRIEEERRKVETEMQRIRKTLESERSLA---LDKEEIFKRL 990

Query: 481  SLREAAL---LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             LRE  L   L   I     L++Q  EL   +      +K+   L  D    +     +I
Sbjct: 991  QLREVELSEKLAGAIADQESLEDQLDELIAAK------KKIEHEL--DLRRGQLEQAAQI 1042

Query: 538  HQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             +RL   ++   E +  +++Q++         +  I  + Q       L     +  ++ 
Sbjct: 1043 MERLEGEKKELQERISDMEKQLKSVESTHGEYDEKIEALNQEIN---TLNSHLAMKDKKL 1099

Query: 596  EEIEKQIAQVTAKGEAEKTA-------------ILISILHEVHIQIHQIESQ 634
            +++E ++     + + E                 L+    E+  QI  + S 
Sbjct: 1100 QDLEAKLLSSDQQLDLELANTTKELEGSKKQIKQLLEENREIQRQIADLSST 1151


>gi|258515243|ref|YP_003191465.1| ATP-dependent chaperone ClpB [Desulfotomaculum acetoxidans DSM 771]
 gi|257778948|gb|ACV62842.1| ATP-dependent chaperone ClpB [Desulfotomaculum acetoxidans DSM 771]
          Length = 863

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/211 (11%), Positives = 79/211 (37%), Gaps = 13/211 (6%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++K+I + +   R ++    +      +  +++    + ++     ++++AL+   +   
Sbjct: 318 YRKHIEKDAALERRFQPVIVNPPSIEDTISILRGLKERYEIHHGVRIKDSALVEAAVLSD 377

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL + + S   +        +   + E    +   Q+ +
Sbjct: 378 RYISDRFLPDKAIDLMDEAAAKLRTEIDSMPTDLDKITRRIMQLEVEEAALSKEKDQVSQ 437

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQAL-----ALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           +  +          +  D  +   Q        L +  + +   K+EIE    +   + +
Sbjct: 438 ERLEKLKEQLANLHSESDSMKAQWQVEKQGISRLQQIKKEIEETKQEIE----RAEREYD 493

Query: 611 AEKTAIL-ISILHEVHIQIHQIESQEAMIEG 640
             + A L    L+E+  ++   +S+E ++ G
Sbjct: 494 LNRLAELKYGRLNELERRL---KSEEELLSG 521


>gi|255994144|ref|ZP_05427279.1| replicative DNA helicase [Eubacterium saphenum ATCC 49989]
 gi|255993812|gb|EEU03901.1| replicative DNA helicase [Eubacterium saphenum ATCC 49989]
          Length = 457

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 60/175 (34%), Gaps = 16/175 (9%)

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
           + + +   +    E++++  ++N+     + ++ L    +   E Q ++  + S +   K
Sbjct: 1   MPEERKLPQHLFAESSVIGAMVNNEQACIDVFEILIKEDFYKKEHQAIFEAMRSLYDIGK 60

Query: 531 YFLPEEIHQRLCERGFGELL---KQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----- 582
                 I + L      E +     L   V      +   E   +   +   + L     
Sbjct: 61  NIDVITIAEELKRHEKLEFVGGSAYLQSLVASVPFVTNAVEYAKIVKEKAISRDLITASG 120

Query: 583 ----ALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISI-LHEVHIQIH 629
                 YK  +      +  E    +I+Q+  KG  E  A ++     E+ +++ 
Sbjct: 121 KIAEICYKDTQNSESMLDYAEHEIFKISQLNQKGIVENIADVLEKNEREIELRLE 175


>gi|261855603|ref|YP_003262886.1| replicative DNA helicase [Halothiobacillus neapolitanus c2]
 gi|261836072|gb|ACX95839.1| replicative DNA helicase [Halothiobacillus neapolitanus c2]
          Length = 473

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 60/189 (31%), Gaps = 16/189 (8%)

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
           +   +   +   +  +    ++       E A+L  L+     L++    L    +   +
Sbjct: 6   KLPARTQNNTSSVSEAFSNVRMPPHSQDAEQAVLGGLMLDHLALEKISDVLRPEDFYRAD 65

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
            +K++  +       K F    + + L +R       QL+       L            
Sbjct: 66  HRKVYEAILDLSEGNKPFDAVMVAEWLSKR------DQLEEAGGVPYLVELVEAVPTAAN 119

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIE 632
              Y Q +    R   + R+  ++  Q+ Q+    +G A    +  +   E+       +
Sbjct: 120 ILAYAQMI----RESSVLRKLIDVGTQVVQMGYRPEGRAAAEVMEFAE-REI---FSIAD 171

Query: 633 SQEAMIEGF 641
             E +  GF
Sbjct: 172 EGERLKRGF 180


>gi|260836455|ref|XP_002613221.1| hypothetical protein BRAFLDRAFT_73157 [Branchiostoma floridae]
 gi|229298606|gb|EEN69230.1| hypothetical protein BRAFLDRAFT_73157 [Branchiostoma floridae]
          Length = 8372

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 62/223 (27%), Gaps = 18/223 (8%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             Q +   L QL +          +  +       +          +L    L  + + ++
Sbjct: 5600 VQFVLAELSQLREGVKKVEERGQQAAQSTQSTEMEGNVQVTTSDLNLRLASLKDQATAKQ 5659

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              +           +E+ ++    +   +  Q     L +     +     +        
Sbjct: 5660 KEI-----------EERLEQQRAHQEALSAYQAEMQALHTWVTGARVQSSIDFITASDRE 5708

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----QALALYKRFRLLSRQKEEIE 599
               E L++  R   D                   +     QA  ++ +   L R   +++
Sbjct: 5709 ALDEQLEENKRLQSDLEDRLIRLPELQDRCSDLVEKEPPAQAELMFSQLNNLQRDMADLQ 5768

Query: 600  KQI--AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            + +   +      AE        L E   ++ +++S  A  +G
Sbjct: 5769 EALTKREDNISEAAEACEQREKELEEYQSRVKKMQSWIANSKG 5811


>gi|187932892|ref|YP_001887714.1| replicative DNA helicase [Clostridium botulinum B str. Eklund 17B]
 gi|187721045|gb|ACD22266.1| replicative DNA helicase [Clostridium botulinum B str. Eklund 17B]
          Length = 445

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/176 (6%), Positives = 51/176 (28%), Gaps = 19/176 (10%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +   +    E +++ ++I   + + +  + L +  +  +  + ++  +   F +      
Sbjct: 7   RTLPQSIEAEQSVIGSMIIDKSAIAKVLESLEEEDFYRDGHKVIFRAILDMFRKDMGVDL 66

Query: 535 EEIHQRLCERGFGEL-------------------LKQLDRQVRDAGLWSATTEANIVDVR 575
             + + L      E                    L    + V +  +     +A+   + 
Sbjct: 67  ITLLENLKSTEMLERAGGVTYITEISASVPTTANLSSYIKIVEEKSVLRKLIKASTSIIE 126

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             Y     +        ++  +I ++      +  ++        +  +     +I
Sbjct: 127 SSYNNQGEVENVLDGAEKRIFDIAEKKTSKDFEPLSDVLERGFLEIERLFNNRGEI 182


>gi|163782595|ref|ZP_02177592.1| citrate synthase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882168|gb|EDP75675.1| citrate synthase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 1158

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 77/227 (33%), Gaps = 27/227 (11%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               Q +++ L++  +    + S      +    +    G  +   +   +K +   K +
Sbjct: 741 EELRQRLKE-LKEDIEYSEEKLSNLILKRQDIINYYRSSGIEENRQEYERIKRRAEAKRA 799

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             E A L               + ++I+    E+Q+  + L S   E +    E    R 
Sbjct: 800 ELEKAKLA-----------FKDKESEIKSVEEEVQRKRAHLESLEAEAESLNKEVEELRA 848

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL----------- 590
                   +K ++ QV         TE  + D++    +     +               
Sbjct: 849 KREELENRVKDIEAQVYQFYKEKDRTEEEVRDLQAELGRLRVEEEDLHSKVGDVSANLSR 908

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHE----VHIQIHQIES 633
           + ++  ++E+++ ++  +GE  +    I+ L E    +  ++  + +
Sbjct: 909 VQQKLTDLEQRLEELNFEGELPEVKEGITKLKERLFKIERELEHLGN 955



 Score = 37.6 bits (85), Expect = 6.2,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 75/216 (34%), Gaps = 10/216 (4%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R +Y +  R +L    Q+   +        +       +K    ++++  L + +   K 
Sbjct: 656 RKFYEEE-RRKLDIEEQELREKEQDILVKLRAIRSEIAEKEGVLKVLEKKLSEFEELSKE 714

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS--DFVEQKYFLPEEIH 538
             R+      L      + +  + +  +R    EL++    L    ++ E+K        
Sbjct: 715 GDRK------LAEFDQKVSKAEEFIEVLRSQEEELRQRLKELKEDIEYSEEKLSNLILKR 768

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           Q +        +++  ++       +    A +   +  ++   +  K      ++K   
Sbjct: 769 QDIINYYRSSGIEENRQEYERIKRRAEAKRAELEKAKLAFKDKESEIKSVEEEVQRKRAH 828

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            + + +  A+   ++   L +   E+  ++  IE+Q
Sbjct: 829 LESL-EAEAESLNKEVEELRAKREELENRVKDIEAQ 863


>gi|149066132|gb|EDM16005.1| rCG59523, isoform CRA_c [Rattus norvegicus]
          Length = 4687

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 84/247 (34%), Gaps = 43/247 (17%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             L   Y + I + L+++ ++            ++ A         ++L + +  + K   
Sbjct: 1468 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAE-AHAQAKAQA 1526

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +   RE            + +   +E+        + Q+    +  +    +     EI 
Sbjct: 1527 ELEARE------------LQRRMQEEVTRREEAAVDAQQQKRSIQEELQHLRQSSEAEIQ 1574

Query: 539  QRLCERGFGELLK-QLDRQVRDAGLWS------------------ATTEANIVDVRQGYQ 579
             +  +    E  + +++ ++R   L                    A  E      RQ  +
Sbjct: 1575 AKAQQVEAAERSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQE 1634

Query: 580  QALALYKRFRLLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIH 629
            +A  L ++ +  S++K + E ++A   +  A+   EK    +  L E+         ++ 
Sbjct: 1635 EAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLR 1693

Query: 630  QIESQEA 636
            Q E++ A
Sbjct: 1694 QAEAERA 1700



 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2386 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2445

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2446 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2505

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2506 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2565

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2566 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2620

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2621 QEQILQETQALQKSFLSEKDSLLQRERFIE 2650



 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2346 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2405

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2406 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2465

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2466 KAEAELLQQQKELAQEQA 2483



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1797 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1856

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1857 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1915


>gi|148686916|gb|EDL18863.1| golgi autoantigen, golgin subfamily a, 5, isoform CRA_b [Mus
           musculus]
          Length = 729

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 80/269 (29%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD----QKLRYYYSQAIRDRLQ 433
           +      + K   +            LE         ++D      L+    Q +++RL 
Sbjct: 294 AKDSQLAVLKVRLQEADQVLSSRTEALEALRSEKSRIMQDHKEGSSLQNQALQTLQERLH 353

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 354 EADATLKREQESYKQMQSEFA---------ARLNKMEVDRQNLAEAVTLAER-------K 397

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    ++  +    ++   + L+     L     +        E++   L E    E L+
Sbjct: 398 YSEEKKKVDELQQQVKLHRSSLESAKQELVDYKQKATRILQSKEKLINSLKEGSSFEGLE 457

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 458 SSTASSMELEELRHEKEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEAESAREQLQDLQD 517

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   +E
Sbjct: 518 QIAKQRTSK--QELETELERMKQEFRYME 544



 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 95/255 (37%), Gaps = 12/255 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSG 445
            E +       +   +++      +N +  +  R   ++A  + +R     +K + E   
Sbjct: 353 HEADATLKREQESYKQMQSEFAARLNKM--EVDRQNLAEAVTLAERKYSEEKKKVDELQQ 410

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             +  + +     Q+    +   + +++ K     SL+E +    L +  A   E  +  
Sbjct: 411 QVKLHRSSLESAKQELVDYKQKATRILQSKEKLINSLKEGSSFEGLESSTASSMELEELR 470

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +      E+QKL   +     E +    +++ +        E L+ L  Q+        
Sbjct: 471 HEKEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEA---ESAREQLQDLQDQIAKQRTSKQ 527

Query: 566 TTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             E  +  ++Q ++     L++    L  + ++ E++I ++  +   +  +       E+
Sbjct: 528 ELETELERMKQEFRYMEEDLHRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNSSQ--SEL 585

Query: 625 HIQIHQIESQEAMIE 639
             ++HQ+   E +I+
Sbjct: 586 ESRLHQL--TETLIQ 598


>gi|123485927|ref|XP_001324607.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121907492|gb|EAY12384.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 1795

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 75/219 (34%), Gaps = 21/219 (9%)

Query: 426  QAIRDRLQQLF-----QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            Q   ++L ++F       +  E +      KKN +       S    ++  +  ++S+K 
Sbjct: 1211 QQFLEKLNEIFGFDNDDDHKAEITELVSDLKKNDQKLRGVMKSDPETETKTLINEISEKI 1270

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             + E   +  ++    ++++  +        + E + +   L     E            
Sbjct: 1271 PIFEK--VTEILGEENLVEKVQELSEMKDISDRENKPIAELLAELKKELNDL-------- 1320

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
              +    E+L  L +   D  +   + +  + D     ++      + +L++ +  ++  
Sbjct: 1321 --KNNRKEVLTILKQPQTDDNILKQSVQMLVNDKNACEEK----LAKTKLVNEKMTKLVS 1374

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +I       E +     IS + ++  ++     +   ++
Sbjct: 1375 EINSTLLVNEDDDGEEAISKIKDLQAELQAANEEMKNMD 1413


>gi|40849896|gb|AAR95660.1| plectin 6 [Rattus norvegicus]
          Length = 4688

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 84/247 (34%), Gaps = 43/247 (17%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             L   Y + I + L+++ ++            ++ A         ++L + +  + K   
Sbjct: 1469 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAE-AHAQAKAQA 1527

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +   RE            + +   +E+        + Q+    +  +    +     EI 
Sbjct: 1528 ELEARE------------LQRRMQEEVTRREEAAVDAQQQKRSIQEELQHLRQSSEAEIQ 1575

Query: 539  QRLCERGFGELLK-QLDRQVRDAGLWS------------------ATTEANIVDVRQGYQ 579
             +  +    E  + +++ ++R   L                    A  E      RQ  +
Sbjct: 1576 AKAQQVEAAERSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQE 1635

Query: 580  QALALYKRFRLLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIH 629
            +A  L ++ +  S++K + E ++A   +  A+   EK    +  L E+         ++ 
Sbjct: 1636 EAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLR 1694

Query: 630  QIESQEA 636
            Q E++ A
Sbjct: 1695 QAEAERA 1701



 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2387 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2446

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2447 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2506

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2507 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2566

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2567 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2621

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2622 QEQILQETQALQKSFLSEKDSLLQRERFIE 2651



 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2347 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2406

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2407 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2466

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2467 KAEAELLQQQKELAQEQA 2484



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1798 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1857

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1858 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1916


>gi|18410584|ref|NP_565083.1| ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101); ATP binding
           / ATPase/ nucleoside-triphosphatase/ nucleotide binding
           / protein binding [Arabidopsis thaliana]
 gi|21264430|sp|P42730|HS101_ARATH RecName: Full=Heat shock protein 101
 gi|6715468|gb|AAF26423.1|AF218796_1 heat shock protein 101 [Arabidopsis thaliana]
 gi|12324908|gb|AAG52410.1|AC020579_12 heat shock protein 101; 13093-16240 [Arabidopsis thaliana]
 gi|332197455|gb|AEE35576.1| heat shock protein 101 [Arabidopsis thaliana]
          Length = 911

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + +   +              + + +      
Sbjct: 391 AIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALER------EKDKASKARLIE 444

Query: 567 TEANIVDVRQGYQQALALYKRF-------RLLSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
               + D+R   Q     Y++        R L +++EE+   + +   + +  + A L  
Sbjct: 445 VRKELDDLRDKLQPLTMKYRKEKERIDEIRRLKQKREELMFSLQEAERRYDLARAADLRY 504

Query: 619 SILHEVHIQIHQIESQ 634
             + EV   I Q+E  
Sbjct: 505 GAIQEVESAIAQLEGT 520


>gi|332346146|gb|AEE59480.1| replicative DNA helicase DnaB [Escherichia coli UMNK88]
          Length = 455

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 7/156 (4%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L  L+       E    L+   +   + + ++  +    V  +      + + L 
Sbjct: 12  AEQAVLGGLMLENERWDEVVLMLSPDDFYVAQHRAIFRAMSELAVNDQPLDLITLSELLE 71

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +G      +LD     A L   +           Y   +      R L      +   +
Sbjct: 72  HQG------RLDVLGGFAYLAELSKNTPSAANIMAYAGIVVEKSVLRQLQATGNTLIADV 125

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           A        +        L  +       E  EA +
Sbjct: 126 A-APNATSRDVLDTAERRLFALAQNRTLRERTEASL 160


>gi|325193949|emb|CCA28098.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 872

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 49/409 (11%), Positives = 125/409 (30%), Gaps = 33/409 (8%)

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
              LY    AL +  K     +    +    ++      +S+ +A      +        
Sbjct: 383 SSTLYGASNALQFTPKPADTMMMEVHAKLDHIIRSMP--VSMNRAATMGFGTPTNVTSIL 440

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             +  L   + R++L  +     ++A  K  + ++  L               D      
Sbjct: 441 DGVERLAHENERLLLQINSQHESVQAYEKRCEEMMYQLQKTQEEKRFT-----DVKYQQM 495

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                 +++ +       D    +     S       A  +    +     + ++L+  +
Sbjct: 496 MTQHANWQQELATLTSARDAAITQTNRLHSEYQQLLNAYYQKQQVSSDAEERVEELK--F 553

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +  R RL++     +   S   +      +  +     +    SS  KG   +   L +
Sbjct: 554 ERKTRTRLEKDLATQVQSASLMEQELDLLRKQLEIAQKLKESEASS--KGSEFENQLLAQ 611

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             LL         L+++ + L       N+  ++   +    ++      E   + L + 
Sbjct: 612 KQLLEKAQQKTHKLEQEMERLQREDQQGND-DRIQHVVTEWKMKLGQVEMES--RHLEDD 668

Query: 545 G------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                    +L  +LDR     G   A    +  +    ++    L  R  +L ++ +E+
Sbjct: 669 NQALKAQMKDLCAELDRVSGSNGATVAQASLDGEESTVEFENTQKLLNRIEMLQQRVKEL 728

Query: 599 EKQ-------------IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           E++             +  V A+ + E    +   + ++  ++    +Q
Sbjct: 729 EQENFVSVQQELEATGLGTVNAQRDDEDDDAIREKMSKLERELADQRAQ 777


>gi|325298028|ref|YP_004257945.1| ATP-dependent chaperone ClpB [Bacteroides salanitronis DSM 18170]
 gi|324317581|gb|ADY35472.1| ATP-dependent chaperone ClpB [Bacteroides salanitronis DSM 18170]
          Length = 862

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 75/271 (27%), Gaps = 41/271 (15%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + L  +DM              +    +   +K    +I        
Sbjct: 220 RILRGDVPENLKNKQLFSLDMGALIAGAKYKGEFEERLKSVINEVKKSEGNI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      +++ P                      +   L   +             R+ +
Sbjct: 328 ERRFQTVMVDEPDTASSI---------------SILRGLKERYENHHQV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + D        +  I  + +    A  L      L  + +EIE+++ 
Sbjct: 366 EAIIAAVELSNRYITDR----FLPDKAIDLMDEA---AAKLRMERDSLPEELDEIERRLK 418

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           Q+  + EA K     + L +++ +I +++ Q
Sbjct: 419 QLEIEREAIKREKDEAKLAQLNKEIAELKEQ 449


>gi|322692510|gb|EFY84416.1| DNA repaire protein UVS6 [Metarhizium acridum CQMa 102]
          Length = 1307

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 96/279 (34%), Gaps = 19/279 (6%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY-SQAI 428
               K I +S   VD +  ++    +  + DE  EL+  +   +  +K++  +     Q +
Sbjct: 801  QLMKDIQDSESQVDRIMSQQLSGGTTRSADEIHELQASIGEQMRGLKNRVAKLTTDRQRM 860

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK----GKLSKKPSLRE 484
            +D+L  L  +     +  G+   +  +  D +   Q L    + +     +  ++    E
Sbjct: 861  KDQLGSLELERSELRNKIGQAVGQLDKKNDIQNQIQALRDDMIHQRETIQRADEELEKVE 920

Query: 485  AALLLTLINHPAILQE-------QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +++         L+           E   I    +E++ L + +               
Sbjct: 921  PSIVDARSARDDTLRRGRAKEQVIVDERDVIANSVSEMKLLDNDIQDYIDRGGPSNLAS- 979

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR--QGYQQALALYKRFRLLSRQK 595
                 +R    L K +    +D    +        D+      ++ ++    +R   RQ 
Sbjct: 980  ----NQRAIAALEKSISNTEKDIADLTVRANKLKQDIDSGDRMKKNISDNLNYRKHLRQL 1035

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            E + ++I ++  +   E    L S    +  Q +++ ++
Sbjct: 1036 EVLRREIEELEDRNAHEDYERLQSEARSLENQSNRLLAE 1074


>gi|312129769|ref|YP_003997109.1| primary replicative DNA helicase [Leadbetterella byssophila DSM
           17132]
 gi|311906315|gb|ADQ16756.1| primary replicative DNA helicase [Leadbetterella byssophila DSM
           17132]
          Length = 519

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 21/63 (33%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           EAA+L  L+     +    + +    +   E + ++  +       +      + + L  
Sbjct: 34  EAAVLGALLIDKDAINLIKESIIPDSFFVEEHRIIYQVILEMSEAGEAIDTLSVTRELRN 93

Query: 544 RGF 546
           R  
Sbjct: 94  RAL 96


>gi|309379446|emb|CBX22013.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 470

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 54/180 (30%), Gaps = 12/180 (6%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
            +       +    L       E ++L  L+            ++   +  +E + ++  
Sbjct: 5   AAMPSEDREISPLSLPPHSMEAEQSVLGGLLLENPAWDRIADVVSGEDFYRHEHRLIFRS 64

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +     E +      + + L         ++L+       L S           + Y + 
Sbjct: 65  VAKLINESRPADVITVQEDLQRN------EELEAAGGFEYLISLAQNTPSAANIRRYAEI 118

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           +    R R + RQ  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 119 V----RERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 172


>gi|256221435|ref|NP_071796.2| plectin isoform 1 [Rattus norvegicus]
          Length = 4687

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 84/247 (34%), Gaps = 43/247 (17%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             L   Y + I + L+++ ++            ++ A         ++L + +  + K   
Sbjct: 1468 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAE-AHAQAKAQA 1526

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +   RE            + +   +E+        + Q+    +  +    +     EI 
Sbjct: 1527 ELEARE------------LQRRMQEEVTRREEAAVDAQQQKRSIQEELQHLRQSSEAEIQ 1574

Query: 539  QRLCERGFGELLK-QLDRQVRDAGLWS------------------ATTEANIVDVRQGYQ 579
             +  +    E  + +++ ++R   L                    A  E      RQ  +
Sbjct: 1575 AKAQQVEAAERSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQE 1634

Query: 580  QALALYKRFRLLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIH 629
            +A  L ++ +  S++K + E ++A   +  A+   EK    +  L E+         ++ 
Sbjct: 1635 EAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLR 1693

Query: 630  QIESQEA 636
            Q E++ A
Sbjct: 1694 QAEAERA 1700



 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2386 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2445

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2446 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2505

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2506 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2565

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2566 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2620

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2621 QEQILQETQALQKSFLSEKDSLLQRERFIE 2650



 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2346 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2405

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2406 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2465

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2466 KAEAELLQQQKELAQEQA 2483



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1797 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1856

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1857 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1915


>gi|261400198|ref|ZP_05986323.1| replicative DNA helicase [Neisseria lactamica ATCC 23970]
 gi|269210204|gb|EEZ76659.1| replicative DNA helicase [Neisseria lactamica ATCC 23970]
          Length = 470

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 54/180 (30%), Gaps = 12/180 (6%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
            +       +    L       E ++L  L+            ++   +  +E + ++  
Sbjct: 5   AAMPSEDREISPLSLPPHSMEAEQSVLGGLLLENPAWDRIADVVSGEDFYRHEHRLIFRS 64

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +     E +      + + L         ++L+       L S           + Y + 
Sbjct: 65  VAKLINESRPADVITVQEDLQRN------EELEAAGGFEYLISLAQNTPSAANIRRYAEI 118

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           +    R R + RQ  E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 119 V----RERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTSKSKQGF 172


>gi|114647521|ref|XP_001167046.1| PREDICTED: similar to restin isoform 2 [Pan troglodytes]
          Length = 1309

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 76/260 (29%), Gaps = 13/260 (5%)

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                D R          +   KD  LR      +R RL+        + S        +
Sbjct: 479 QRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLESNKPAGDVDMSLSLLQEISS 538

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
            + + +   +    + + +K     +    +  +         + +E     + + + N 
Sbjct: 539 LQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANK 598

Query: 514 ELQ---KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
           E      LW       +       EE+      +G G    +               +  
Sbjct: 599 ENSDVIALWKSKLETAIASHQQAMEELKVSF-SKGLGTETAEFAELKTQIEKMRLDYQHE 657

Query: 571 IVDVRQGYQQALALYKRFRL-----LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           I +++       + + +        L +  +E E  +  + +K +  +       L E+ 
Sbjct: 658 IENLQNQQDSERSAHAKEMEALRAKLMKVIKEKENSLEAIKSKLDKAED----QHLVEME 713

Query: 626 IQIHQIESQEAMIEGFGKMS 645
             +++++  E   E F + S
Sbjct: 714 DTLNKLQEAEIKKEKFAEAS 733


>gi|162287127|ref|NP_001094160.1| myosin-14 [Rattus norvegicus]
          Length = 2000

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/254 (9%), Positives = 72/254 (28%), Gaps = 24/254 (9%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            RE +       + R   E          + ++     ++ +  RL +  +          
Sbjct: 1385 RELQTTQAQLSEWRRRQEEEAAVLEAGEEARRRAAREAETLAQRLAEKTEAVERLERARR 1444

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            R  ++        G  ++L+ +   K +   +    E A +L  +     ++ + +E   
Sbjct: 1445 RLQQELDDATVDLGQQKQLLSTLEKKQRKFDQLLAEEKAAVLRAVEDRERVEAEGREREA 1504

Query: 508  IRYD---------------NNELQKLWSFLFSDFVEQ-------KYFLPEEIHQRLCERG 545
                                 + + L + L +    +                       
Sbjct: 1505 RALSLTRALEEEQEAREELERQNRALRAELEALLSSKDDVGKNVHELERARRVAEQAASD 1564

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
                + +L+ ++  A       E  +  ++   Q    L  R      ++ ++ KQ+   
Sbjct: 1565 LRTQVTELEDELTAAEDAKLRLEVTVQALKA--QHERDLQGRDDAGEERRRQLAKQLRDA 1622

Query: 606  TAKGEAEKTAILIS 619
              + + E+    ++
Sbjct: 1623 EVERDEERKQRALA 1636



 Score = 38.3 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 82/271 (30%), Gaps = 7/271 (2%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQAI 428
             + +L ++  PL+ +  + E          +  EL+      +  ++ +  +       +
Sbjct: 854  QWWRLFIKVKPLLQVTRQDEVLQARAQELQKVQELQQQSAREVGELQGRVAQLEEERARL 913

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             ++L+   +          R   +           +  +       +  +    R    +
Sbjct: 914  AEQLRAEAELCSEAEETRARLAARKQELELVVTELEARVGEEEECSRQLQSEKKRLQQHI 973

Query: 489  LTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              L  H    +   Q+L   +      ++K    L     +      E          F 
Sbjct: 974  QELETHLEAEEGARQKLQLEKVTTEAKMKKFEEDLLLLEDQNSKLSKERRLLEERLAEFS 1033

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE----EIEKQIA 603
                + + +V+         EA I D+    ++     +    L R+ +    E+++Q+ 
Sbjct: 1034 SQAAEEEEKVKSLNKLRVKYEATIADMEDRLKKEEKGRQELEKLKRRLDGESSELQEQMM 1093

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +   + E E    L     E+   + + E +
Sbjct: 1094 EQKQRAE-ELLIQLGRKEEELQSALVRAEEE 1123


>gi|46199833|ref|YP_005500.1| excinuclease ABC subunit B [Thermus thermophilus HB27]
 gi|46197460|gb|AAS81873.1| excinuclease ABC subunit B [Thermus thermophilus HB27]
          Length = 668

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 1/102 (0%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSR 593
           E + + + E      L++           +   E   V   +GY++A L        L  
Sbjct: 555 EAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPLEADLSGEDLRE 614

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +  E+E  + Q     + E+ A L   +  +  ++  +++ E
Sbjct: 615 RIAELELAMWQAAEALDFERAARLRDEIRALEARLQGVKTPE 656


>gi|311258597|ref|XP_003127691.1| PREDICTED: rootletin-like [Sus scrofa]
          Length = 2017

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 68/222 (30%), Gaps = 12/222 (5%)

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           L       +   +Q    +   + S         AR       S      S  +G     
Sbjct: 458 LAQAVLSDMESGVQLSGSERTADTSDGSLRGLSGARTPSPPRRSSPGRGRSPRRGPSPAC 517

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                 AL+ + ++   +  +            + L  L   L     E +    EE  Q
Sbjct: 518 SDSSTLALIHSALHKRQL--QVQDMRGRYEASQDLLSTLRKQLSD--SEGERRALEEQLQ 573

Query: 540 RLCE------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           RL +      +   +  ++  R      L S   ++    ++   QQA  L +    L  
Sbjct: 574 RLRDKTDGATQAQEDAQREAQRLRSAVDLLSREKDSLAHSLQAAQQQAEELRQEREKLQA 633

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILI--SILHEVHIQIHQIES 633
            ++E+++Q  Q+  + E            L   H Q+ Q+E 
Sbjct: 634 AQKELQRQRDQLEEEQEDTAQDSAWTRRELERSHRQLEQLEG 675


>gi|73967054|ref|XP_868297.1| PREDICTED: similar to myosin 18A isoform b isoform 3 [Canis
            familiaris]
          Length = 2039

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/349 (10%), Positives = 91/349 (26%), Gaps = 31/349 (8%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 1461 RRFDSELSQAHEEAQREKLQREKLQREKDTLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 1520

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1521 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1580

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E+ L   
Sbjct: 1581 RMRQTHSKEVESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELESKLTTL 1639

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1640 SEQVSQRDLESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQLKNQLEESEFT- 1698

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1699 ----CAAAVKARKAMEVEMEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQSRLEEDQED 1754

Query: 609  GE-----------------------AEKTAILISILHEVHIQIHQIESQ 634
                                       +         E+  ++  ++SQ
Sbjct: 1755 MNELMKKHKAAVAQASRDLAQMNDLQAQLEEANKEKQELQEKLQALQSQ 1803



 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1779 LQAQLEEANKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFER 1835

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1836 TQVKRLESLASRLKENMEKLTEERDQRTAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1895



 Score = 37.9 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 91/305 (29%), Gaps = 36/305 (11%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             +      ++  VD   KR  +        E+       +   +   D        Q ++
Sbjct: 1370 EWRLKYERAMREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADIDESQRALQQLK 1429

Query: 430  DRLQQLFQK----------YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             + Q+L  +              +    +  ++      Q     +  +    K +  K 
Sbjct: 1430 KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEEAQREKLQREKLQREKD 1489

Query: 480  PSLREAALLLTLINHPAI-----------LQEQYQELADIRYDNNE-LQKLWSFLFSDFV 527
              L EA  L   +    +           L+ + Q+++     +   L K+   L     
Sbjct: 1490 TLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEA 1549

Query: 528  -----EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ------ 576
                 E++        Q L +     L  +++R  +       + +  + + RQ      
Sbjct: 1550 KVKDQEEELDEQAGTIQMLEQAKLR-LEMEMERMRQTHSKEVESRDEEVEEARQSCQKKL 1608

Query: 577  --GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                 Q    Y+  + + R+K E+E ++  ++ +           +  ++      +   
Sbjct: 1609 KQMEVQLEEEYEDKQKVLREKRELESKLTTLSEQVSQRDLESEKRLRKDLKRTKALLADA 1668

Query: 635  EAMIE 639
            + M++
Sbjct: 1669 QIMLD 1673


>gi|268573628|ref|XP_002641791.1| Hypothetical protein CBG10142 [Caenorhabditis briggsae]
          Length = 891

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 75/219 (34%), Gaps = 15/219 (6%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                R + +   ++  + +    R          +   +Q   ++   +  L  + + R
Sbjct: 550 MLDEARRKFEADVEQMKSNNQQVIRNHANTVESMQKAHETQNAEKNKESERNLEDERARR 609

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           EA +L     H  ++    +++A+      +L      L +          + + + +  
Sbjct: 610 EAEILAMNNRHQKVVACLDEKIAEAEKQCEQLSADKKTLQAALANDCDHRNQMLTKEISS 669

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                L   L+ +  +        +   + V +   + L + K     +  K+ ++++I 
Sbjct: 670 -----LQTALEMKSAEMKDLRQKNQNLSLQVDEIPLKELEISKWKHKSNEYKQMLDQKI- 723

Query: 604 QVTAKGEAEKTAILISILHEVHI-QIHQIESQEAMIEGF 641
                   EK   L+  + ++   QIH  E +EAM   F
Sbjct: 724 ------NGEKI--LVQQIEDLRRKQIHDEEEKEAMKRSF 754


>gi|42558934|sp|Q8HZ58|CCHCR_PONPY RecName: Full=Coiled-coil alpha-helical rod protein 1; AltName:
           Full=Alpha-helical coiled-coil rod protein
 gi|23296150|gb|AAN12281.1| HCR [Pongo pygmaeus]
          Length = 782

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 567 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETQLREQLSDTERRLNEA 626

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 627 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 686


>gi|330721328|gb|EGG99407.1| Replicative DNA helicase [gamma proteobacterium IMCC2047]
          Length = 458

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 45/127 (35%), Gaps = 3/127 (2%)

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
               K+  +    E A+L  L+       +  +EL D  +  +E Q ++  +     + +
Sbjct: 10  TAAVKVPPQSLEAEQAVLGGLMLENDAWDKVSEELIDSDFYRHEHQLIFRAMGGIVEKNQ 69

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 + + L + G    L+ +        L   T  A+ +       +  ++ ++   
Sbjct: 70  PLDVITLSEALDKVGD---LEAVGGLSYLGELARNTPTASNIRAYAEIIRERSILRKLVT 126

Query: 591 LSRQKEE 597
           ++ +  +
Sbjct: 127 VAGEIAD 133


>gi|317178556|dbj|BAJ56344.1| ATPase [Helicobacter pylori F30]
          Length = 864

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/293 (10%), Positives = 89/293 (30%), Gaps = 17/293 (5%)

Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
                   + +    D    +    +   E+         + ++ R     S    +   
Sbjct: 332 KHETIQKCIEIQPDTDIVDSVEYLAQNEVEEFATNVSKFTEAIFNRIDSKLSGKLKELEN 391

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
           ++   ++     I   + +    + +++R                       +    K  
Sbjct: 392 QITKDIEKFDEQIAYWQEKTNLEEKLKNR-------EKERKKSQNIIDTFTDKDYLDKRE 444

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
             +  + +L+  K SK+  L     L  ++N      E  + + +    +    +L   +
Sbjct: 445 KLQENRKALIDLKQSKEGVLTFIEKLKQVVNF-----ESKENMEEKNSYDKVYNQLKQNI 499

Query: 523 FSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
             +  E    + +       +         + L +++ +        + NI D+ +   Q
Sbjct: 500 CKELEEIDKNIKDGCFDSDDKNIGKLENEQQTLYQEIGEFLKEKGVIDENIGDLERANYQ 559

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
              + +    L R+ EEI  +I   + +G  E          +++ ++ +I S
Sbjct: 560 LADIEREIVDLKRKIEEIANKIKGFSWEGIDENIEEF---KDQINKELSKINS 609


>gi|299115715|emb|CBN74280.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1443

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 78/236 (33%), Gaps = 19/236 (8%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              +    + + +   +L    +          +  A  R           S  VK    
Sbjct: 361 SLEKEDLQEKLDELQMELDSTKLDLEHAQLNAKENEAAARALSAAGGARDGSVDVKMLAE 420

Query: 478 KKPSLREAALLLTL----INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           +   L+EA  L  L    I     L +  + L         L+     L S   + K   
Sbjct: 421 QNVQLKEA--LKRLHTHSIAEKTDLTKAIRSLEKEATSTAGLKDEVEKLRSW-KDSKAAE 477

Query: 534 PEEIHQRL-CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
            E++ ++L   + + E+++ L  +  + G      EA I D+    + +  L  +    +
Sbjct: 478 MEDLLEKLDESKAYEEMVEALTTKNLEIGERCGELEATIADLESSVEMSEELETQQ---A 534

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
               E++ ++          +   L +    +   + +++  +  I+ F + + RL
Sbjct: 535 EDIRELQSEL--------TGREVSLHNQKLALESVMKELQDTKQTIDRFREYADRL 582


>gi|282900582|ref|ZP_06308524.1| ATPase [Cylindrospermopsis raciborskii CS-505]
 gi|281194382|gb|EFA69337.1| ATPase [Cylindrospermopsis raciborskii CS-505]
          Length = 871

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 80/216 (37%), Gaps = 6/216 (2%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KY+ + +   R +++    +     +  +++    + ++     + +++L+       
Sbjct: 321 YRKYLEKDAALERRFQQVYVDQPDVPDTISILRGLKERYEVHHGVRISDSSLVAAATLSS 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI---HQRLCERGFGELLKQ 552
             + +++     I   +    +L   + S   +      + +    ++L  +   +    
Sbjct: 381 RYISDRFLPDKAIDLVDEAAARLKMGITSKPEKLDEIDRKILQLEMEKLSLQKESDPASN 440

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
              +  +  L     E  +  +R  +Q    +  + + +  + +++  +I Q       E
Sbjct: 441 ERLKTLEKELVDLKEEQAV--LRIQWQSEKDIITKIQSIKEEIDKVNLEIQQAQRITNHE 498

Query: 613 KTAIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
           + + L    L E+  Q+   E++ A  +  GK   R
Sbjct: 499 RASELIYGKLPELQKQLENTETELANTQRTGKSLLR 534


>gi|159117990|ref|XP_001709214.1| Axoneme-associated protein GASP-180 [Giardia lamblia ATCC 50803]
 gi|157437330|gb|EDO81540.1| Axoneme-associated protein GASP-180 [Giardia lamblia ATCC 50803]
 gi|213495868|gb|ACJ49154.1| head-stalk protein GHSP-180 [Giardia intestinalis]
          Length = 1585

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/288 (9%), Positives = 85/288 (29%), Gaps = 13/288 (4%)

Query: 358  DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
            DP+   +      F+  +V+ +  +  L    T        +  A +   +      +++
Sbjct: 919  DPEEQAKVSSILDFDDGLVQKVDELQALVNALTGENDHYKGEH-ARIMAEMDALKEDLRN 977

Query: 418  QKLRYYYSQAIRDRL-------QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
             +LR    +  ++RL         L +    +        +  A  ++      R+ +  
Sbjct: 978  GRLRSDSLEGDKERLMKQVRDLTDLVESLRKDLGAPQDQGEVAALRQEVADLRSRVDELI 1037

Query: 471  LVKGKLSKKPSLREAA--LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                   +     E    +      +   L E   E+   +    E +++   L +    
Sbjct: 1038 DAAKGKDETIEQLEKELAIARASAENTERLSELLAEVEGYKAKLGESKEMVDSLLAQLAS 1097

Query: 529  QKYFLPEE---IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +   L      +     + G      ++     +         A + ++   ++  +   
Sbjct: 1098 KDAELAGATTGLRAVTDDDGAELAKARVASLENEVAELRGQLNAKLAEIDAVHKNLVDSD 1157

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                 L  +   +  Q+       + E+  +L   L +   ++ ++ +
Sbjct: 1158 AEAARLREELGGLRVQLEAAQVPEDTERVRMLEDQLQDARKELAELRA 1205



 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 81/255 (31%), Gaps = 26/255 (10%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY--I 440
           + L             +   ++        N  +D   R    + +RDR+Q+  +    +
Sbjct: 481 ERLLADAQGGDDERVKELNEQIADLQFELANAKQDIDERDDEIELLRDRIQEEMKNSAAL 540

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
            E                +       +Q  + +     + +  +   +  L       +E
Sbjct: 541 QERVDALEADATRGADAAEYLARIEELQQQVKELSGRSRDAPADETAIRAL-------EE 593

Query: 501 QYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           + + L  +I   +N++ +L   +     +     P ++     E G            R 
Sbjct: 594 KIRALTDEIEARDNQIAELKELVDGAPAQPVETDPAQLTALEEENG------------RL 641

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
                A  +A     + G  +A  L  +   L+++  ++++ +A   A G+A        
Sbjct: 642 KDELQALNDALEALRKSGADEASGLRGQVAHLNKEVSDLKEALANARASGDASDVE---- 697

Query: 620 ILHEVHIQIHQIESQ 634
            L E+  Q+   + Q
Sbjct: 698 RLVELQEQLEDAQEQ 712



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 76/227 (33%), Gaps = 21/227 (9%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           ++D+++ L  +   +        ++        G +  L         L ++   RE+ L
Sbjct: 288 LKDKIRALQSELAEKERDIRALNERLTAVPSPTGDAALLADYENKISALREELEARESDL 347

Query: 488 --LLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             L  ++      +++   L + +   +  + +L     S        + EE  + L + 
Sbjct: 348 SGLRPIVEKTRAFEDELAGLRSMLDERDARIAELEQAAASQDEAYATQILEEEVESLRQA 407

Query: 545 ------GFGELLKQLDR------QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                     L  +L+       +  D     A   + I  ++    +A +  +      
Sbjct: 408 LLAKDGELEALQSRLEETLARGGEAADFDAIIAAKNSEIARLQDLVMRAESAQRSSAEGD 467

Query: 593 RQKEEIEKQIAQVTAK------GEAEKTAILISILHEVHIQIHQIES 633
           ++  ++E QIA +         G+ E+   L   + ++  ++   + 
Sbjct: 468 KRVAQLEAQIAGLERLLADAQGGDDERVKELNEQIADLQFELANAKQ 514



 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 1/129 (0%)

Query: 511  DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            D   ++ L   L     E          + +   G    L   D ++ +    S  T   
Sbjct: 1182 DTERVRMLEDQLQDARKELAELRAALEAKEMETEGLRAELATADPELANKLEASEATVRE 1241

Query: 571  IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            + +  +  Q  L      R      +++ +Q+ +    G  E  A   + + E+  ++  
Sbjct: 1242 LRESAEALQDKLHALSDSRAADGDLQKLVEQL-EKDLSGAKELVAERDATIDELKQRLRD 1300

Query: 631  IESQEAMIE 639
             E  + + E
Sbjct: 1301 TEEYDDLKE 1309



 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/257 (9%), Positives = 68/257 (26%), Gaps = 49/257 (19%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--SSLVKGKLSKKPSLRE 484
             + ++L+                  K     D +     L +    L K     K  + E
Sbjct: 1227 ELANKLEASEATVRELRESAEALQDKLHALSDSRAADGDLQKLVEQLEKDLSGAKELVAE 1286

Query: 485  AAL----LLTLINHPAILQEQYQELADIRYD-----------NNELQKLWSFLFS----- 524
                   L   +       +  + +A++  +           + E+ +L   L +     
Sbjct: 1287 RDATIDELKQRLRDTEEYDDLKERIAELDDEIAVLNDGLKDKDAEIAELREQLEAQPTAT 1346

Query: 525  --DFVEQKYFLPEEIHQRLCER----------------GFGELLKQLDRQVRDAGLWSAT 566
                   +        + + +                    + +  L +Q  D       
Sbjct: 1347 TVYPESGEEVGDAAALREVQDENAALKDELEAKRSLIDELQDEIDGLKQQCSDLKDEMIK 1406

Query: 567  TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ---IAQVTAKGEAEKTAILISILHE 623
             ++   D     Q +L   ++      Q  +++++   +       +      L   L +
Sbjct: 1407 LDSANNDKITTLQCSLDESRK------QIADLQEEVEVLKNTANDIDPAVVESLQEELRK 1460

Query: 624  VHIQIHQIESQEAMIEG 640
            +  ++   E+    ++G
Sbjct: 1461 LQEELDDRENTITELQG 1477



 Score = 37.6 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 67/206 (32%), Gaps = 27/206 (13%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
              RL++       +                +        + + ++  L  K    E    
Sbjct: 1160 AARLREELGGLRVQLEAAQVPEDTERVRMLEDQLQDARKELAELRAALEAKEMETEGLRA 1219

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                  P +  +    L        EL++    L                 R  +    +
Sbjct: 1220 ELATADPELANK----LEASEATVRELRESAEALQDKLHALSD-------SRAADGDLQK 1268

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L++QL++ +  A    A  +A I +++Q  +            + + ++++++IA++   
Sbjct: 1269 LVEQLEKDLSGAKELVAERDATIDELKQRLRD-----------TEEYDDLKERIAELD-- 1315

Query: 609  GEAEKTAILISILHEVHIQIHQIESQ 634
               ++ A+L   L +   +I ++  Q
Sbjct: 1316 ---DEIAVLNDGLKDKDAEIAELREQ 1338


>gi|37577099|ref|NP_149159.2| dystrobrevin beta isoform 2 [Homo sapiens]
 gi|119621130|gb|EAX00725.1| dystrobrevin, beta, isoform CRA_g [Homo sapiens]
          Length = 597

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +        E AL+ + +             + +   + E + +  +   
Sbjct: 355 PTPTKRLQYSQDIPSHLADEHALIASYVARLQHCARVLDSPSRL---DEEHRLIARYAAR 411

Query: 525 DFVEQKYFL--PEEI-HQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E       P ++       +   +L+ +L+ + R+            E       + 
Sbjct: 412 LAAEAGNVTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEK 471

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 472 AQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEELMKLLKE-EEQKQAAQAT 529


>gi|114647523|ref|XP_001167071.1| PREDICTED: similar to restin isoform 3 [Pan troglodytes]
          Length = 1307

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 76/260 (29%), Gaps = 13/260 (5%)

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                D R          +   KD  LR      +R RL+        + S        +
Sbjct: 479 QRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLESNKPAGDVDMSLSLLQEISS 538

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
            + + +   +    + + +K     +    +  +         + +E     + + + N 
Sbjct: 539 LQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANK 598

Query: 514 ELQ---KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
           E      LW       +       EE+      +G G    +               +  
Sbjct: 599 ENSDVIALWKSKLETAIASHQQAMEELKVSF-SKGLGTETAEFAELKTQIEKMRLDYQHE 657

Query: 571 IVDVRQGYQQALALYKRFRL-----LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           I +++       + + +        L +  +E E  +  + +K +  +       L E+ 
Sbjct: 658 IENLQNQQDSERSAHAKEMEALRAKLMKVIKEKENSLEAIKSKLDKAED----QHLVEME 713

Query: 626 IQIHQIESQEAMIEGFGKMS 645
             +++++  E   E F + S
Sbjct: 714 DTLNKLQEAEIKKEKFAEAS 733


>gi|6649910|gb|AAF21628.1|AF026274_1 Sumiko [Mus musculus]
          Length = 729

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 80/269 (29%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD----QKLRYYYSQAIRDRLQ 433
           +      + K   +            LE         ++D      L+    Q +++RL 
Sbjct: 294 AKDSQLAVLKVRLQEADQVLSSRTEALEALRSEKSRIMQDHKEGSSLQNQALQTLQERLH 353

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 354 EADATLKREQESYKQMQSEFA---------ARLNKMEVDRQNLAEAVTLAER-------K 397

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    ++  +    ++   + L+     L     +        E++   L E    E L+
Sbjct: 398 YSEEKKKVDELQQQVKLHRSSLESAKQELVDYKQKATRILQSKEKLINSLKEGSSFEGLE 457

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 458 SSTASSMELEELRHEKEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEAESAREQLQDLQD 517

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   +E
Sbjct: 518 QIAKQRTSK--QELETELERMKQEFRYME 544



 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 95/255 (37%), Gaps = 12/255 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSG 445
            E +       +   +++      +N +  +  R   ++A  + +R     +K + E   
Sbjct: 353 HEADATLKREQESYKQMQSEFAARLNKM--EVDRQNLAEAVTLAERKYSEEKKKVDELQQ 410

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             +  + +     Q+    +   + +++ K     SL+E +    L +  A   E  +  
Sbjct: 411 QVKLHRSSLESAKQELVDYKQKATRILQSKEKLINSLKEGSSFEGLESSTASSMELEELR 470

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +      E+QKL   +     E +    +++ +        E L+ L  Q+        
Sbjct: 471 HEKEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEA---ESAREQLQDLQDQIAKQRTSKQ 527

Query: 566 TTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             E  +  ++Q ++     L++    L  + ++ E++I ++  +   +  +       E+
Sbjct: 528 ELETELERMKQEFRYMEEDLHRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNSSQ--SEL 585

Query: 625 HIQIHQIESQEAMIE 639
             ++HQ+   E +I+
Sbjct: 586 ESRLHQL--TETLIQ 598


>gi|73967060|ref|XP_854225.1| PREDICTED: similar to myosin 18A isoform a isoform 2 [Canis
            familiaris]
          Length = 2054

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/349 (10%), Positives = 91/349 (26%), Gaps = 31/349 (8%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 1461 RRFDSELSQAHEEAQREKLQREKLQREKDTLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 1520

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1521 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1580

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E+ L   
Sbjct: 1581 RMRQTHSKEVESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELESKLTTL 1639

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1640 SEQVSQRDLESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQLKNQLEESEFT- 1698

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1699 ----CAAAVKARKAMEVEMEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQSRLEEDQED 1754

Query: 609  GE-----------------------AEKTAILISILHEVHIQIHQIESQ 634
                                       +         E+  ++  ++SQ
Sbjct: 1755 MNELMKKHKAAVAQASRDLAQMNDLQAQLEEANKEKQELQEKLQALQSQ 1803



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1779 LQAQLEEANKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFER 1835

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1836 TQVKRLESLASRLKENMEKLTEERDQRTAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1895



 Score = 37.9 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 91/305 (29%), Gaps = 36/305 (11%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             +      ++  VD   KR  +        E+       +   +   D        Q ++
Sbjct: 1370 EWRLKYERAMREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADIDESQRALQQLK 1429

Query: 430  DRLQQLFQK----------YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             + Q+L  +              +    +  ++      Q     +  +    K +  K 
Sbjct: 1430 KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEEAQREKLQREKLQREKD 1489

Query: 480  PSLREAALLLTLINHPAI-----------LQEQYQELADIRYDNNE-LQKLWSFLFSDFV 527
              L EA  L   +    +           L+ + Q+++     +   L K+   L     
Sbjct: 1490 TLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEA 1549

Query: 528  -----EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ------ 576
                 E++        Q L +     L  +++R  +       + +  + + RQ      
Sbjct: 1550 KVKDQEEELDEQAGTIQMLEQAKLR-LEMEMERMRQTHSKEVESRDEEVEEARQSCQKKL 1608

Query: 577  --GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                 Q    Y+  + + R+K E+E ++  ++ +           +  ++      +   
Sbjct: 1609 KQMEVQLEEEYEDKQKVLREKRELESKLTTLSEQVSQRDLESEKRLRKDLKRTKALLADA 1668

Query: 635  EAMIE 639
            + M++
Sbjct: 1669 QIMLD 1673


>gi|74140577|dbj|BAE42418.1| unnamed protein product [Mus musculus]
          Length = 1239

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 45/358 (12%), Positives = 107/358 (29%), Gaps = 15/358 (4%)

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
                  L +L    +      +   +   +  DL              L ++    +  
Sbjct: 201 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 260

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                      L  E         ++E E       +   +LEI          D     
Sbjct: 261 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 320

Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Y  + + ++  +L    +           +     +     +Q L      + +L ++ S
Sbjct: 321 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMGKKNQELEVVWQQRERLQEELS 380

Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538
             E+ +        + L  +E  + L D   +  E +++L   +       +     + +
Sbjct: 381 QAESTIDELKEQVDSALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 440

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R  E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    
Sbjct: 441 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 500

Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
           ++   +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 501 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558


>gi|297271897|ref|XP_001118181.2| PREDICTED: myosin-10 [Macaca mulatta]
          Length = 1999

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 899  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 958

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 959  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1018

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1019 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1072

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  L  A  E    +++    +        
Sbjct: 1073 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKE---EELQGALARGDDETLHK 1129

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1130 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1177



 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 83/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L   ++     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1414 EEAKKKLLKDVEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQ 1473

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1474 KKFDQLLAEEKSISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1528

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1529 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1588

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ + E+    ++          
Sbjct: 1589 EVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELDDERKQRALAVASKKKMEID 1648

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1649 LKDLEAQIEA 1658


>gi|289614725|emb|CBI58502.1| unnamed protein product [Sordaria macrospora]
          Length = 2466

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 26/302 (8%)

Query: 362  FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            FI    + A E+   +   L +     E +     + + R       +  I    +  LR
Sbjct: 1703 FIAAQTQRAVEEDDKKKKILQETTIALERQLAEKESIETRLAELKEEEARIKESINVTLR 1762

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                Q     L+ L Q+            ++    +     +    +  L     S +  
Sbjct: 1763 EEQDQLKSQFLENLQQEQARLKQMNESLKQEQEELKSTFLANLAEEEHRLKTLNESLRKE 1822

Query: 482  LREAALLLTL--------INHPAILQEQYQELADIRYDN---NELQKLWSFLFSDFVEQK 530
              EA  +           +       ++ QE     +      E  +L     +   E+ 
Sbjct: 1823 HEEAKAVFMAGLKEEETRLKELNASLKEEQETLKKTFTTNLQEEHDRLMEMNVA-LKEEH 1881

Query: 531  YFLPEEIHQRLCER------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
              + +     L +           L  + +   R         EA + +     ++   L
Sbjct: 1882 DTMKKTFAANLRDERDRLIELNSALKAEHESLKRSFLAVLKDEEARLKESNDALREEQQL 1941

Query: 585  YK-RFRLLSRQKEEIEKQIAQVTAKGEAEK-------TAILISILHEVHIQIHQIESQEA 636
             K +F    R++E + K++ +   + + E               L E++  + + + +  
Sbjct: 1942 LKDKFLKNLREEESLLKEVNEGLRQEQKELRSSFLAAFQEEERRLKEINASLREEQEEMK 2001

Query: 637  MI 638
             I
Sbjct: 2002 AI 2003


>gi|170029182|ref|XP_001842472.1| myosin heavy chain [Culex quinquefasciatus]
 gi|167881575|gb|EDS44958.1| myosin heavy chain [Culex quinquefasciatus]
          Length = 1927

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/260 (11%), Positives = 84/260 (32%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1539 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1598

Query: 443  HSGYGRYWKKNARHRDQKGPSQ-RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q   +Q  L +    +    ++  + E           A+  E 
Sbjct: 1599 NKANAEAQKNIKRYQQQLKDTQGALEEEQRARDDAREQLGISER-------RANALQNEL 1651

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE----EIHQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1652 EESRTLLEQADRGRRQAEQELGDAHEQLNEVSAQNASIAAAKRKLESELQTLHSDLDELL 1711

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +T  L
Sbjct: 1712 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDDAETNAL 1771

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++ES+
Sbjct: 1772 KGGKKAIQKMEQRVRELESE 1791


>gi|114669113|ref|XP_001166470.1| PREDICTED: myosin, heavy polypeptide 10, non-muscle isoform 5 [Pan
            troglodytes]
          Length = 1992

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 892  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 951

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 952  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1011

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1012 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1065

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  L  A  E    +++    +        
Sbjct: 1066 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKE---EELQGALARGDDETLHK 1122

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1123 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1170



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1407 EEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQ 1466

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1467 KKFDQLLAEEKSISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1521

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1522 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1581

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1582 EVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEID 1641

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1642 LKDLEAQIEA 1651


>gi|62702122|gb|AAX93049.1| unknown [Homo sapiens]
          Length = 1337

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 771  MSEKQLKQENNHLMEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 830

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 831  ELKEECEEKTKLGKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 890

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 891  EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 942

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 943  NKLKD--VQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1000

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1001 NDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1045


>gi|537446|gb|AAA67927.1| AtHSP101 [Arabidopsis thaliana]
          Length = 911

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + +   +              + + +      
Sbjct: 391 AIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALER------EKDKASKARLIE 444

Query: 567 TEANIVDVRQGYQQALALYKRF-------RLLSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
               + D+R   Q     Y++        R L +++EE+   + +   + +  + A L  
Sbjct: 445 VRKELDDLRDKLQPLTMKYRKEKERIDEIRRLKQKREELMFSLQEAERRYDLARAADLRY 504

Query: 619 SILHEVHIQIHQIESQ 634
             + EV   I Q+E  
Sbjct: 505 GAIQEVESAIAQLEGT 520


>gi|68533107|dbj|BAE06108.1| MYH10 variant protein [Homo sapiens]
          Length = 2018

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 918  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 977

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 978  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1037

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1038 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1091

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  L  A  E    +++    +        
Sbjct: 1092 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKE---EELQGALARGDDETLHK 1148

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1149 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1196



 Score = 38.3 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1433 EEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQ 1492

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1493 KKFDQLLAEEKSISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1547

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1548 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1607

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1608 EVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEID 1667

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1668 LKDLEAQIEA 1677


>gi|66810347|ref|XP_638897.1| WASP-related protein [Dictyostelium discoideum AX4]
 gi|60467506|gb|EAL65528.1| WASP-related protein [Dictyostelium discoideum AX4]
          Length = 905

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 78/231 (33%), Gaps = 23/231 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK-KPSLR 483
            + +RD+++QL  K   E   +     K      +    +     ++ + K +K K    
Sbjct: 387 IEKLRDKIKQLENKLANEEKEHNLLLTKYKTLESKYTGGETNQNQAVNEAKTAKTKLEQL 446

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           E     +L+N   +L+   Q + +   +   EL  L   +     +        + +++ 
Sbjct: 447 EREH-SSLLNKIKVLETNNQLVQNENKNQENELSNLKKSILDS-KKNMDADKGPLIEKIS 504

Query: 543 -------------------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                              ++   + LK+L  Q +++   S   +  I ++         
Sbjct: 505 TLESKLKDSEFEKRSIQSKDQELEKKLKELTNQSKESEQQSFEYQVKIKELSSQLDSLKE 564

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                + LS + +EI  Q  Q   + +          L+   ++I Q+ S 
Sbjct: 565 ALSNNKDLSSKIQEISNQFQQKEKELKESYEKQYNQRLNNQKLEIDQLSST 615


>gi|310658856|ref|YP_003936577.1| hypothetical protein CLOST_1552 [Clostridium sticklandii DSM 519]
 gi|308825634|emb|CBH21672.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 644

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 92/290 (31%), Gaps = 22/290 (7%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK-----LRYYY 424
               L   S    +   +    + S          +   K+    I         ++  Y
Sbjct: 245 EIRALKDSSPEDYEFRIRNIKGSISLYKNQLVELEQNATKDLREKIDSAMEEGAAIKKAY 304

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            Q  +D L+   +K  T       + KK +  R +    + L          +    L E
Sbjct: 305 LQN-KDTLEDEARKVKTLTEDIKEFDKKLSDLRAEFEKVKNLKFDESSNICPTCHQVLPE 363

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             +   +           ++L  I     +++                  EEI   L   
Sbjct: 364 EEIQKHI---DEFNSNNQKKLISINQLGKDIKADKLKAEEALNAIDLKDKEEIVTALKNE 420

Query: 545 --GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----------RFRLLS 592
                +L+K L+ Q++   +  +    +I+   Q  +Q +              + + L+
Sbjct: 421 MHAKADLVKSLEEQLKVIDISESKEYKDILLQIQIKEQEIKDILELQSANDNSEKVKELN 480

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISIL-HEVHIQIHQIESQEAMIEGF 641
            Q ++I KQIA++    + EK    +     E+   I ++E +E + E F
Sbjct: 481 DQLDKISKQIAKIDIAKDNEKRVTELKERERELSNMIAELEKKEFLCEQF 530


>gi|301769403|ref|XP_002920120.1| PREDICTED: centrosomal protein of 120 kDa-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 987

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 82/279 (29%), Gaps = 11/279 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +     +
Sbjct: 646 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVKK---K 702

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              Y   +    +     +K   +        ++  +    +     L     ++     
Sbjct: 703 VAEYTVLEGKLQKTLIDLEKREQQLVLAESEVQRERKELKLERERNLLELQDSIRRAKED 762

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E   L        +  ++ +    +    N+ + L         +Q       + 
Sbjct: 763 CVHQVELERLKM----RQLEDDKVRLQQQLSDAENKYKILEKEFLQFKDQQSNKPEIRLQ 818

Query: 539 QRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             +        EL ++L+   +    +       + ++ +  Q+      +   L +Q+E
Sbjct: 819 SEINLLTLEKVELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQE 876

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           E+E+   +  A  E +        L ++  +++++  QE
Sbjct: 877 ELEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 915


>gi|224087991|ref|XP_002196099.1| PREDICTED: homer homolog 3 (Drosophila) [Taeniopygia guttata]
          Length = 1263

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 74/214 (34%), Gaps = 17/214 (7%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
              RL +   +  TE +        +         S    +  L + + +      E   L
Sbjct: 1019 AARLAREKSQDKTELTNPALSITSHQVLPSPIISSNGPGEDKLFRSQSADVEITTEKERL 1078

Query: 489  LTLINHPAILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
              +++  ++ + Q++      + +  +   KL + L       + +  +    +      
Sbjct: 1079 KKMLSEGSVSEVQWEA----EFFSLQDNNTKLVAALHEANASVEQWKKQLAAYQEETESL 1134

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE-KQIAQV 605
             + + +L+ Q        ++ E     + +     L L  + +    + + ++ ++  + 
Sbjct: 1135 RQRVAELEAQGTPDSCGDSSKEELSQSLEE-----LELLVKAK--DEEIQLLKSQRCGRW 1187

Query: 606  TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             A+GE E     +  L E+  +  ++E +  + E
Sbjct: 1188 EAEGERE---ETLQKLQELEARNAELERRLQLAE 1218


>gi|156386496|ref|XP_001633948.1| predicted protein [Nematostella vectensis]
 gi|156221025|gb|EDO41885.1| predicted protein [Nematostella vectensis]
          Length = 1752

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 84/273 (30%), Gaps = 10/273 (3%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN-----HIKDQKLR 421
                 EKL   +  L +     E          +      HL+          ++    R
Sbjct: 1404 RTEEIEKLYERNKELREKERDYEELKTKMRDLSQTERKLEHLQRLNQDAVAKQLELANER 1463

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                   ++  ++  +      SG     ++  +        +    + L + +      
Sbjct: 1464 DDLLHRYQELEKETRESRHVLDSGRNDEVERLGQQVIVLEVEKEQALAKLEELQKRNSLL 1523

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             R A LL ++      L  + ++  ++R +  +L           + Q      ++   +
Sbjct: 1524 ERSAQLLESMRKENEALATKCKDADEMRRNIIKLTTQLREADKARLNQDEIDDLKLSLSI 1583

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             +    +L  ++D   R       T E  +  +++      A  K    + R   E++ +
Sbjct: 1584 SQAEKQQLQTRIDELDRAHADLRETAE-EVQRIKKENASLKAQVKELGEIRRSVSELKGE 1642

Query: 602  IAQVTAKGEAEKTAILISILHEVHI--QIHQIE 632
            + +  A    EK   L  +   +    QI ++E
Sbjct: 1643 LVEAEAL--KEKFIQLQRVERALRNDLQIQKME 1673


>gi|123287165|emb|CAM25634.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
 gi|220860573|emb|CAX15084.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
          Length = 729

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 514 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 573

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 574 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 633


>gi|150865547|ref|XP_001384811.2| hypothetical protein PICST_32134 [Scheffersomyces stipitis CBS
           6054]
 gi|149386803|gb|ABN66782.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 575

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 65/199 (32%), Gaps = 29/199 (14%)

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
           AR RD+    + +  S   K K     S  E       IN     +  Y EL +    + 
Sbjct: 11  ARARDEIASDEPIHVSKEGKEKPESSSSNAEN------INDSDYAKYVYDELDE----DA 60

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQR-----------LCERGFGELLKQLDRQVRDAGL 562
             Q L+  L   F        + I +            L E      L  ++  V +   
Sbjct: 61  TFQSLFDMLVEMFPMIPRNEVKMIMRLSNSFAELIDILLPEADLYTFLNHIEEDVANKA- 119

Query: 563 WSATTEANIVDVRQGYQQALALY-------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            +    A     ++   Q  AL+       +    L  + ++ + ++ +   K +AEK  
Sbjct: 120 EAVKENAKRKRTKKIGNQKKALHETKEEVEREKIALRERIKKEQAELREQIEKEQAEKKK 179

Query: 616 ILISILHEVHIQIHQIESQ 634
            +     E+  Q+ + ++ 
Sbjct: 180 QIEREQAELREQLAREQAT 198


>gi|114669111|ref|XP_511852.2| PREDICTED: myosin, heavy polypeptide 10, non-muscle isoform 8 [Pan
            troglodytes]
 gi|208965262|dbj|BAG72645.1| myosin, heavy chain 10, non-muscle [synthetic construct]
          Length = 2007

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 907  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 966

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 967  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1026

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1027 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1080

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  L  A  E    +++    +        
Sbjct: 1081 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKE---EELQGALARGDDETLHK 1137

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1138 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1185



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1422 EEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQ 1481

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1482 KKFDQLLAEEKSISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1536

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1537 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1596

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1597 EVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEID 1656

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1657 LKDLEAQIEA 1666


>gi|326433297|gb|EGD78867.1| hypothetical protein PTSG_01844 [Salpingoeca sp. ATCC 50818]
          Length = 1717

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 41/128 (32%), Gaps = 4/128 (3%)

Query: 512 NNELQKLWSFL-FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
           N    +L   L  +        L   + +   E+   +  ++L     +        E  
Sbjct: 24  NPRHAELCEELRTASMAATPTLLRTPLDRFRLEKLVHQQDRRLKILSSEKLALQQELEMA 83

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               ++      A   +  +  +Q  E E++        +       ++  + +   IH+
Sbjct: 84  NDRAKKLETATQAAETQRDMAKKQLAEAEQRAKDARQTHDQAALQTQLAEANSL---IHR 140

Query: 631 IESQEAMI 638
           +E+Q A +
Sbjct: 141 LETQNATL 148


>gi|307200398|gb|EFN80630.1| hypothetical protein EAI_05549 [Harpegnathos saltator]
          Length = 1203

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 51/139 (36%), Gaps = 7/139 (5%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           +E    +  +    ++ +     +     ++     EE  Q L E    E   +L+ + +
Sbjct: 227 RENQDSIEQVPLSADQ-EAFARQVLQQIQKEH----EEKAQFLKEERVKE-FARLNEEQK 280

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL- 617
                +   +  +   ++  +Q  A  KR  L   ++   ++++ ++    E ++   L 
Sbjct: 281 ALERKTRLQQEALQREQELLRQKEAEKKRKELERLEEMARQRELERIREAREKQRQEELE 340

Query: 618 ISILHEVHIQIHQIESQEA 636
              L E+  +  +    EA
Sbjct: 341 RRRLAELRTKEEKRREDEA 359


>gi|289742941|gb|ADD20218.1| hypothetical conserved protein [Glossina morsitans morsitans]
          Length = 423

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 86/243 (35%), Gaps = 16/243 (6%)

Query: 396 NTPDERAELEIHLKNCINHIKDQ-KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
              +        L++ I  ++ +   +  + +     L+ + +++ TE +          
Sbjct: 67  TKNERENVTMQELRDKITQLESEKLEKAEFRRRFEKELEMIEEQWRTETNDLADLVSSLQ 126

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL------LLTLINHPAILQEQYQELADI 508
               +       +QS+  +       SL E+ +      L   ++   +LQ   +++   
Sbjct: 127 EENKRLVKQTEDLQSASAQSSGLGA-SLTESIISITNNELHAALSDTQVLQRLKEQIYRQ 185

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
           R   ++L++    L   + E ++   +   +RL   G  +  ++                
Sbjct: 186 R---DDLKEKERELQEKYQENEHMTIQ--LERLKSSG-RDTRRRCTMLQTQVKTLCEERA 239

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +  ++  Y++   L KR  L  ++KE++   ++Q     +  +       L E+  + 
Sbjct: 240 DFLAQLQDQYREINNLRKRLGLAEKEKEDLV--MSQDDTSNDPNRPRYTTRELKELINER 297

Query: 629 HQI 631
            ++
Sbjct: 298 DEL 300


>gi|114669115|ref|XP_001166384.1| PREDICTED: myosin, heavy polypeptide 10, non-muscle isoform 3 [Pan
            troglodytes]
          Length = 1997

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 897  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 956

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 957  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1016

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1017 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1070

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  L  A  E    +++    +        
Sbjct: 1071 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKE---EELQGALARGDDETLHK 1127

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1128 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1175



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1412 EEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQ 1471

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1472 KKFDQLLAEEKSISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1526

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1527 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1586

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1587 EVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEID 1646

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1647 LKDLEAQIEA 1656


>gi|114669121|ref|XP_001166431.1| PREDICTED: myosin, heavy polypeptide 10, non-muscle isoform 4 [Pan
            troglodytes]
          Length = 1970

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 870  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 929

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 930  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 989

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 990  KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1043

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  L  A  E    +++    +        
Sbjct: 1044 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKE---EELQGALARGDDETLHK 1100

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1101 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1148



 Score = 37.9 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1385 EEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQ 1444

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1445 KKFDQLLAEEKSISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1499

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1500 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1559

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1560 EVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEID 1619

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1620 LKDLEAQIEA 1629


>gi|90960808|dbj|BAE92751.1| a-helix coiled-coil rod homologue [Pan troglodytes]
          Length = 756

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 541 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 600

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 601 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 660


>gi|90960810|dbj|BAE92752.1| a-helix coiled-coil rod homologue [Pan troglodytes]
          Length = 756

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 541 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 600

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 601 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 660


>gi|67968457|dbj|BAE00590.1| unnamed protein product [Macaca fascicularis]
          Length = 661

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/148 (9%), Positives = 43/148 (29%), Gaps = 7/148 (4%)

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSF-LFSDFVEQKYFLPEEIHQRLCERG 545
           L+  L ++  ++ +  +            Q L    L     E+K    E + Q      
Sbjct: 294 LIYLLEHYKKLMSQTQELQIKFNSSQETQQSLLQEKLREHLAEKKQLNEERLEQE----- 348

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             +L  ++ +   +                +  ++     +    L  Q+++   +    
Sbjct: 349 -EKLKAKIRQLTEEKAALEERITQERNRANETLEEERKRMQELESLLAQQKKALAESITQ 407

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIES 633
                 E      + + E+  ++ + + 
Sbjct: 408 EKNRVKEALEEEQTRVQELEKRLARQKE 435


>gi|382658|prf||1819485A CENP-E protein
          Length = 2663

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 79/217 (36%), Gaps = 13/217 (5%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
              + +  + L                   +    K       +      +L K+   +  
Sbjct: 1802 DKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSL 1861

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L    I +  + QE ++ L +++    E   L         E      +++ + L E  
Sbjct: 1862 TLSKLEIENLNLAQELHENLEEMKSVMKERDNLRR-----VEETLKLERDQLKESLQETK 1916

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSRQKEEIEKQIAQ 604
              +L  ++ ++++ A + S   +  +  +R+   +  + +    + L + K+E++K+I +
Sbjct: 1917 ARDL--EIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQE 1974

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
            +  K        L+ +  +V++   +I   E + + F
Sbjct: 1975 LQKKE-----LQLLRVKEDVNMSHKKINEMEQLKKQF 2006


>gi|332221908|ref|XP_003260105.1| PREDICTED: coiled-coil domain-containing protein 18 [Nomascus
            leucogenys]
          Length = 1298

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/253 (9%), Positives = 86/253 (33%), Gaps = 4/253 (1%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            R+ +       +E +++E  + +     +D+ +  Y    + D+ +   +K         
Sbjct: 868  RQVKLEMDQYKEELSKMEKEIMHLKQDGEDKAMHLYQLDMVLDQTKTELEKKTNAVKELE 927

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            +          +    + ++++ L       K +LR+   L  ++    +  E  ++   
Sbjct: 928  KLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTT 985

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            I+    EL++    +     E          +    +     +  LD  +R+        
Sbjct: 986  IKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1045

Query: 568  EANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
               +   + +   +     K+   L+ + +  ++Q+ +        +   +  +  E+  
Sbjct: 1046 IIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFVMLQNE-QEISQLKKEIER 1104

Query: 627  QIHQIESQEAMIE 639
               +++  E++++
Sbjct: 1105 TQQRMKEMESVMK 1117


>gi|327279137|ref|XP_003224314.1| PREDICTED: LOW QUALITY PROTEIN: sperm flagellar protein 2-like
           [Anolis carolinensis]
          Length = 1770

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 99/288 (34%), Gaps = 25/288 (8%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +R  G   + + +   +P    L   +  +      D       +     N  K +K++ 
Sbjct: 128 LRSVGTEMYRERLKSLVPRQTELTLLQISDSFHKKADNLESKI-YYMELANQEKAKKIQG 186

Query: 423 YYSQAIRDRL--QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
             ++ +  ++  +Q   + + +         K       K   ++ M     + +     
Sbjct: 187 RKAEDMEKKILEKQKQNEIMAKIQAAIVQIPKPMPQHTVKAIEEQKMLRKKKEAEGRDVA 246

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQK-----LWSFLFSDFVEQKYFLPE 535
           +     LL T  +    +++  + L +  +   + +K     L   L +   +++ +  E
Sbjct: 247 TPTITELLSTY-SDDEYIRKVQKRLEEDTFAREQREKRRRKMLREQLIAHEAQEEAYREE 305

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++  RL  +   E  +++  Q+                    +Q  +   K+F    R+ 
Sbjct: 306 QLINRLMRQSQQE--RRIAVQLLHVKHEKEV----------MWQDRIFREKQFE--ERRL 351

Query: 596 EEIEKQIAQVTAKGEAEKTA-ILISIL-HEVHIQIHQIESQEAMIEGF 641
           +E ++ + +  A  + EK      +    ++H ++    ++E   + F
Sbjct: 352 KEFQEALDREAALAKQEKIEFEEQAHKEKQLHAKLAAQRAEERYKKHF 399


>gi|326474304|gb|EGD98313.1| myosin type II heavy chain [Trichophyton tonsurans CBS 112818]
          Length = 2406

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 78/232 (33%), Gaps = 32/232 (13%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    Q +  + QQ   +         +   +  R R      + L    L K ++ K+ 
Sbjct: 934  RDEKIQQLEAKAQQDIAERQRIEEERRKVETEMQRIRKTLESERSLA---LDKEEIFKRL 990

Query: 481  SLREAAL---LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             LRE  L   L   I     L++Q  EL   +      +K+   L  D    +     +I
Sbjct: 991  QLREVELSEKLAGAIADQESLEDQLDELIAAK------KKIEHEL--DLRRGQLEQAAQI 1042

Query: 538  HQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             +RL   ++   E +  +++Q++         +  I  + Q       L     +  ++ 
Sbjct: 1043 MERLEGEKKELQERISDMEKQLKSVESTHGEYDEKIEALNQEIN---TLNSHLAMKDKKL 1099

Query: 596  EEIEKQIAQVTAKGEAEKTA-------------ILISILHEVHIQIHQIESQ 634
            +++E ++     + + E                 L+    E+  QI  + S 
Sbjct: 1100 QDLEAKLLSSDQQLDLELANTTKELEGSKKQIKQLLEENREIQRQIADLSST 1151


>gi|327304677|ref|XP_003237030.1| actin cytoskeleton-regulatory complex protein PAN1 [Trichophyton
            rubrum CBS 118892]
 gi|326460028|gb|EGD85481.1| actin cytoskeleton-regulatory complex protein PAN1 [Trichophyton
            rubrum CBS 118892]
          Length = 1467

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 45/121 (37%), Gaps = 3/121 (2%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                 EQ+  L +E  Q+  E    +L  +  +Q  +        +A +  + +  +Q  
Sbjct: 1021 IRAKEEQEAALRQE--QQAQEAETEQLEDETRKQEEELAREKEAAQARLKALEEQVRQG- 1077

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
             + K+ +   +Q+ E E +  +     +  +         E+  Q+  +  +E+  +  G
Sbjct: 1078 KIKKQEQKRRKQQAEQEAREKEAKLAAQRAELEAAQERERELQRQLESLGDEESSSDDEG 1137

Query: 643  K 643
             
Sbjct: 1138 P 1138


>gi|296314552|ref|ZP_06864493.1| replicative DNA helicase [Neisseria polysaccharea ATCC 43768]
 gi|296838725|gb|EFH22663.1| replicative DNA helicase [Neisseria polysaccharea ATCC 43768]
          Length = 468

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 12/131 (9%)

Query: 475 KLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            L       E ++L   ++ +PA        ++   +  +E + ++  +     E +   
Sbjct: 18  SLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIAKLINESRPAD 76

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L         ++L+       L +           + Y + +    R R + R
Sbjct: 77  VITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV----RERSIMR 126

Query: 594 QKEEIEKQIAQ 604
           Q  E+  +IA+
Sbjct: 127 QLAEVGTEIAR 137


>gi|301757430|ref|XP_002914565.1| PREDICTED: myosin-9-like [Ailuropoda melanoleuca]
 gi|281351115|gb|EFB26699.1| hypothetical protein PANDA_002468 [Ailuropoda melanoleuca]
          Length = 1961

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 93/263 (35%), Gaps = 24/263 (9%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EKL ++     +     E E        ++ ELE    +    +++++ R  + QA + 
Sbjct: 880  AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKK 939

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++QQ  Q+   +        +K    +       + ++   +  +       +E  LL  
Sbjct: 940  KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCKLAKEKKLLE- 998

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +            +  ++ + L         
Sbjct: 999  -----DRIAEFTTNLMEEEEKSKSLAKLKNK--------HEAMITDLEEHLRREEKQ--- 1042

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                RQ  +        ++  ++ +    QA     +   L++++EE++  +A+V  +  
Sbjct: 1043 ----RQELEKTRRKLEGDSTDLNDQIAELQAQIAELKM-QLAKKEEELQAALARVEEEAS 1097

Query: 611  AEKTAILISILHEVHIQIHQIES 633
             +  A  +  + E+  QI +++ 
Sbjct: 1098 QKNMA--LKKIRELESQISELQE 1118



 Score = 37.9 bits (86), Expect = 4.8,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 70/227 (30%), Gaps = 15/227 (6%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            + ++ R    + +R+   +L  +            K     +D +       ++     K
Sbjct: 1579 QSEEKRKQLVRQVREMEAELEDERKQRSMAVAARKKLEMDLKDLEAHIDSANKNRDEAIK 1638

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +K   +    +  L         + + LA  + +  +L+ + + +     E       
Sbjct: 1639 QLRKLQAQMKDYMREL---EDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAATERA 1695

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +   +   EL  ++        L           + Q  ++         LL+ + 
Sbjct: 1696 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIAQLEEELDEEQSNTELLNDRL 1752

Query: 596  EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIES 633
            ++   QI Q+      E++           L     E+ +++ ++E 
Sbjct: 1753 KKANLQIDQINTDLNLERSHAQKNENLRQQLERQNKELKVKLQEMEG 1799


>gi|168984997|emb|CAQ10499.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
 gi|168985402|emb|CAQ07086.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
 gi|168985844|emb|CAQ10778.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
          Length = 729

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 514 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 573

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 574 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 633


>gi|114707229|ref|ZP_01440127.1| seryl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
 gi|114537425|gb|EAU40551.1| seryl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
          Length = 473

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 31/70 (44%)

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             +D+ +  ++     K  + L  ++ E  K I +    G+  K   LI  + ++  Q+ 
Sbjct: 26  AAIDLIKLDEKRRDHLKILQDLQARRNEASKAIGKAKGSGDDAKAEELIGEVAKIKSQLQ 85

Query: 630 QIESQEAMIE 639
             E++E  I+
Sbjct: 86  AGEAEERRID 95


>gi|29865|emb|CAA78727.1| CENP-E [Homo sapiens]
          Length = 2663

 Score = 43.3 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 79/217 (36%), Gaps = 13/217 (5%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
              + +  + L                   +    K       +      +L K+   +  
Sbjct: 1802 DKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSL 1861

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L    I +  + QE ++ L +++    E   L         E      +++ + L E  
Sbjct: 1862 TLSKLEIENLNLAQELHENLEEMKSVMKERDNLRR-----VEETLKLERDQLKESLQETK 1916

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSRQKEEIEKQIAQ 604
              +L  ++ ++++ A + S   +  +  +R+   +  + +    + L + K+E++K+I +
Sbjct: 1917 ARDL--EIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQE 1974

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
            +  K        L+ +  +V++   +I   E + + F
Sbjct: 1975 LQKKE-----LQLLRVKEDVNMSHKKINEMEQLKKQF 2006


>gi|326928124|ref|XP_003210233.1| PREDICTED: TATA element modulatory factor-like [Meleagris
           gallopavo]
          Length = 1083

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 68/203 (33%), Gaps = 8/203 (3%)

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
              E        K+N + ++ +   Q L Q    K  L K+       L + +      L
Sbjct: 569 RAKEKERENINTKQNKKIKELEEELQHLKQVLDGKEDLEKQHRESIKQLNVVVERQEKDL 628

Query: 499 QEQYQELADIRYDNN----ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQ 552
            +   E+ D+   N      L   +  L            E     L        EL   
Sbjct: 629 AKLQAEVEDLEERNRSVQAALDSAYKELADLHKANATKDSEAQEAALSREMKAKEELGLA 688

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           L++   +A          + D+R   Q+A     ++   L ++  E+++++ +  ++   
Sbjct: 689 LEKAKDEARQQQEALAIQVADLRLALQRAEQQAARKEDYLRQEISELQQRLQEAESR-NQ 747

Query: 612 EKTAILISILHEVHIQIHQIESQ 634
           E +  + S    +  QI  +++ 
Sbjct: 748 ELSQSVTSATRPLLRQIENLQAT 770


>gi|327313393|ref|YP_004328830.1| ATP-dependent chaperone protein ClpB [Prevotella denticola F0289]
 gi|326945354|gb|AEA21239.1| ATP-dependent chaperone protein ClpB [Prevotella denticola F0289]
          Length = 862

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 16/143 (11%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSA 565
            I   +    KL         +      +EI +RL +     E +K+ D   + A L   
Sbjct: 388 AIDLMDEAAAKLRME-----RDSVPEELDEITRRLKQLEIEREAIKREDDSEKIAQLDKE 442

Query: 566 TTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI------- 616
             E    +   R  ++   AL  + +   ++ E ++ +  +   +G  E+ A        
Sbjct: 443 IAELREQEHSFRAKWEGERALVNKIQQDKQEMENLKYEADRAEREGNYERVAEIRYSRLK 502

Query: 617 -LISILHEVHIQIHQIESQEAMI 638
            L   +  +  Q+   +  +AM+
Sbjct: 503 QLEDDIKNIQQQLQATQGGQAMV 525



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/279 (11%), Positives = 77/279 (27%), Gaps = 38/279 (13%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + L  +DM              +    +   +     +I        
Sbjct: 220 RIVRGDVPENLKDKQLYSLDMGAMLAGAKYKGEFEERLKSVIKEVTKAEGNI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGGGEGAMDAANILKPALARGELRAIGATTLNEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      +++ P  L                   +   L   +             R+ +
Sbjct: 328 ERRFQTVMVDEPDELDAI---------------SILRGLKERYENHHKV-------RIQD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 +K  +R + D  L     +       +   +  ++ +    ++R+ +++E +  
Sbjct: 366 DACIAAVKLSERYISDRFLPDKAIDLMDEAAAKLRMERDSVPEELDEITRRLKQLEIERE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQ----IHQIESQEAMI 638
            +  + ++EK A L   + E+  Q      + E + A++
Sbjct: 426 AIKREDDSEKIAQLDKEIAELREQEHSFRAKWEGERALV 464


>gi|301763657|ref|XP_002917244.1| PREDICTED: protein Hook homolog 1-like [Ailuropoda melanoleuca]
          Length = 726

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 37/340 (10%), Positives = 101/340 (29%), Gaps = 31/340 (9%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           DG                   +   +     L   +D         +    +    +   
Sbjct: 231 DGSFDDPNTMVAKKYFHAQLQLEQLQEENFRLEAAKDDYRVHCEELEKQLIEFQHRN--- 287

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
            ++    E      +  D             + ++  + +      +R +++ L +  + 
Sbjct: 288 DELTNLAEETRALKDEIDVLRATSDKANKLESTVEIYRQKLQDLNDLRKQVKTLQETNMM 347

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPAI 497
                    ++  +    +   +   +            S R   L   +      H A+
Sbjct: 348 YMHNTVSLEEELKKANAARTQLETYKRQVQDLHNKLSSESKRADTLAFEMKRLEEKHEAL 407

Query: 498 LQEQYQELAD---IRYDNNELQ--KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           L+E+ + +     ++  N EL+  ++     +          E +   +    + E+  +
Sbjct: 408 LKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTDASATKSYENLAAEIMPVEYREVFIR 467

Query: 553 LDRQVRDAGLWSA-TTEANIVDVRQGYQQALA-----------LYKRFRLLSRQKEEIEK 600
           L  + +   L    T    I ++++  +Q                +R R L +Q E+++K
Sbjct: 468 LQHENKMLRLQQEGTENERIEELKEQLEQKHRKMNELETEQRLSKERIRELQQQIEDLQK 527

Query: 601 QIAQVTAKGE-------AEKTAILISILHEVHIQIHQIES 633
            + +  +K E        +K    +  L EV  ++ + + 
Sbjct: 528 SLQEQGSKSEGESSSKLKQKLEAHMEKLTEVQEELQKKQE 567


>gi|297700004|ref|XP_002827056.1| PREDICTED: myosin-10 isoform 1 [Pongo abelii]
          Length = 2007

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 907  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 966

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 967  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1026

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1027 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1080

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  L  A  E    +++    +        
Sbjct: 1081 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKE---EELQGALARGDDETLHK 1137

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1138 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1185



 Score = 37.2 bits (84), Expect = 8.3,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 76/243 (31%), Gaps = 22/243 (9%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1422 EEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQ 1481

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1482 KKFDQLLAEEKSISARHAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1536

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +                    + +L++  R            + ++
Sbjct: 1537 NKQLRADMEDLMSSKDDVGKN--------------VHELEKSKRALEQQVEEMRTQLEEL 1582

Query: 575  RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                Q       R  +  +  +   ++  Q   +   EK  +LI  + E+  ++     Q
Sbjct: 1583 EDELQATEDAKLRLEVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQ 1642

Query: 635  EAM 637
             A+
Sbjct: 1643 RAL 1645


>gi|162450015|ref|YP_001612382.1| hypothetical protein sce1744 [Sorangium cellulosum 'So ce 56']
 gi|161160597|emb|CAN91902.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 1201

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 61/211 (28%), Gaps = 12/211 (5%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           +    +             K  AR +  +    +  Q+ L  G +  +     A+L    
Sbjct: 157 VSARPEDRRMLIEEAAGITKYKARKKQAEQKMDQTRQNLLRVGDIVSEIQRNLASLKRQA 216

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR----LCERGFG 547
                 +  + + L D+       + L   + +           E  Q     L  R   
Sbjct: 217 AKAERYVNYRKE-LEDLVLHEASHKLLEITVLTQHESLGRAAHAEREQASRTALSAREAE 275

Query: 548 ELLKQLDRQVRDAGLWSATTEA--NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             + +L+    +     A  EA      VR    +      R R L  +     K+  ++
Sbjct: 276 IEVTRLEALACEERAERAQNEAFAADNQVRTHEAEIARARDRLRHLEERLVTAAKEQGEL 335

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                      L +   ++  Q+  ++ +EA
Sbjct: 336 EKT-----VEELSAEKAQLEAQLAGVDEEEA 361


>gi|149724305|ref|XP_001504875.1| PREDICTED: myosin, heavy chain 10, non-muscle isoform 1 [Equus
            caballus]
          Length = 1976

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 876  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 935

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 936  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 995

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 996  KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1049

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +        
Sbjct: 1050 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKIQLAKKE---EELQGALARGDDETLHK 1106

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1107 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1154



 Score = 37.9 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 84/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L   ++     ++++ L Y   +  ++RLQQ     + +           +K  
Sbjct: 1391 EEAKKKLLKDVEALSQRLEEKALAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ 1450

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1451 KKFDQLLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1505

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1506 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1565

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1566 EVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEID 1625

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1626 LKDLEAQIEA 1635


>gi|119610414|gb|EAW90008.1| myosin, heavy polypeptide 8, skeletal muscle, perinatal, isoform
            CRA_a [Homo sapiens]
          Length = 1937

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHTRVVETMQSTLDAEIRSRNDALRVKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1624 DLNEM-EIQLNHANRLAAESLRNYRNTQGILKETQLHLDDALRGQEDLKEQ------LAI 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828


>gi|114669123|ref|XP_001166222.1| PREDICTED: myosin, heavy polypeptide 10, non-muscle isoform 1 [Pan
            troglodytes]
          Length = 1967

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 914  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 973

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 974  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1033

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1034 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1087

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  L  A  E    +++    +        
Sbjct: 1088 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKE---EELQGALARGDDETLHK 1144

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1145 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1192



 Score = 37.9 bits (86), Expect = 4.7,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1429 EEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQ 1488

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1489 KKFDQLLAEEKSISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1543

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1544 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1603

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1604 EVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEID 1663

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1664 LKDLEAQIEA 1673


>gi|71061468|ref|NP_001804.2| centromere-associated protein E [Homo sapiens]
 gi|160358869|sp|Q02224|CENPE_HUMAN RecName: Full=Centromere-associated protein E; AltName:
            Full=Centromere protein E; Short=CENP-E; AltName:
            Full=Kinesin-related protein CENPE; Flags: Precursor
 gi|119626576|gb|EAX06171.1| centromere protein E, 312kDa, isoform CRA_c [Homo sapiens]
 gi|225356542|gb|AAI56502.1| Centromere protein E, 312kDa [synthetic construct]
          Length = 2701

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 74/214 (34%), Gaps = 16/214 (7%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
              + +  + L                   +    K       +      +L K+   +  
Sbjct: 1802 DKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSL 1861

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L    I +  + Q+ ++ L +++    E   L         E      +++ + L E  
Sbjct: 1862 TLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRR-----VEETLKLERDQLKESLQETK 1916

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSRQKEEIEKQIAQ 604
              +L  ++ ++++ A + S   +  +  +R+   +  + +    + L + K+E++K+I +
Sbjct: 1917 ARDL--EIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQE 1974

Query: 605  VTA--------KGEAEKTAILISILHEVHIQIHQ 630
            +          K +   +   I+ + ++  Q   
Sbjct: 1975 LQKKELQLLRVKEDVNMSHKKINEMEQLKKQFEA 2008


>gi|299535608|ref|ZP_07048929.1| trigger factor (TF) [Lysinibacillus fusiformis ZC1]
 gi|298728808|gb|EFI69362.1| trigger factor (TF) [Lysinibacillus fusiformis ZC1]
          Length = 429

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 22/164 (13%)

Query: 495 PAILQEQYQELADIRYDNNELQK-----------------LWSFLFSDFVEQKYFL-PEE 536
           P +  E  +EL         L+                  L   L     E   F  P  
Sbjct: 249 PELNDEFAKELDPEVESVEALRAKIKEQTAAQKETESDAALRDELVEKAAENADFEVPAG 308

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +     +R   E  ++L  Q  +  L+   +  +  D+R   ++      R  L      
Sbjct: 309 MINSETDRMLQEFGQRLQTQGMNLDLYYQFSGQSEEDLRGQMKEEAESRVRVSLTLEAIA 368

Query: 597 EIEK-QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           E EK + ++   + E EK A   ++  +   QI       A++E
Sbjct: 369 EAEKIEASEADIEAELEKMAAQFNMTKD---QITSALGGTAVLE 409


>gi|240102087|ref|YP_002958395.1| hypothetical protein TGAM_0029 [Thermococcus gammatolerans EJ3]
 gi|239909640|gb|ACS32531.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
          Length = 668

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 96/279 (34%), Gaps = 21/279 (7%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                      + L+++   L + + K     R     +  +   + ++  +  I++ + 
Sbjct: 370 EAGLSKRADEVKALVIQGYNLGEAMQKVARRERPREEEEPESGESVDVRPYVRKIRELEE 429

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  + +   + L+ + ++         R          +K   +R +++ + + +L +  
Sbjct: 430 RIAFLERENEELRGIIREQRRTIERLERRIADYDEEVRRKVLRERELEAKVKRIELLETQ 489

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL----WSFLFSDFVE-------- 528
                A++  L     +++ +   + +IR     L+ L    W  L     E        
Sbjct: 490 LREAKAVIERLSR--DLVKVKRMNVVEIRGSAVPLKVLRVLSWRELERIEREVGLRRGDV 547

Query: 529 ----QKYFLPEEIHQRLCERGFGELLKQ--LDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                     + I + L E+G   L+ +  L   VR+    +        ++        
Sbjct: 548 LFVVNPAGAGKAIAEELVEKGIKALITEKPLPGPVREVLREAHLPFFTSEELDVKRVDEF 607

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
           A+ +R   L R  EE+ ++  +   + EAEK   L+   
Sbjct: 608 AVVERE-TLERAIEELLERWKKEDEEREAEKFLRLVEEY 645


>gi|194226776|ref|XP_001500252.2| PREDICTED: myosin, heavy chain 9, non-muscle [Equus caballus]
          Length = 1862

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 95/263 (36%), Gaps = 24/263 (9%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EKL ++     +     E E        ++ ELE    +    +++++ R  + QA + 
Sbjct: 880  AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKK 939

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++QQ  Q+   +        +K    +       + ++   +  +       +E  LL  
Sbjct: 940  KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIILEDQNCKLAKEKKLLE- 998

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +            +  ++ +RL         
Sbjct: 999  -----DRIAEFTTNLTEEEEKSKSLAKLKNK--------HEAMITDLEERLRREEKQ--- 1042

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                RQ  +        ++  ++ +    QA     +   L++++EE++  +A+V  +  
Sbjct: 1043 ----RQELEKTRRKLEGDSTDLNDQIAELQAQIAELKM-QLAKKEEELQAALARVEEE-- 1095

Query: 611  AEKTAILISILHEVHIQIHQIES 633
            A +  + +  + E+  QI +++ 
Sbjct: 1096 AAQKNMALKKIRELESQISELQE 1118


>gi|156383596|ref|XP_001632919.1| predicted protein [Nematostella vectensis]
 gi|156219982|gb|EDO40856.1| predicted protein [Nematostella vectensis]
          Length = 1457

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVD--VRQGY 578
              +  +   L E + +   +      +L  +LD+Q+    +     E +  +       
Sbjct: 147 VKHYSSENAKLEEALKRACEKHAEHMEQLDDELDQQMSRLEMRIKKEEQSKFERSNLDMV 206

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEA 636
            Q     K  + L+ +  ++E +I +   + +   E+    +  L  +  Q+   ++  A
Sbjct: 207 WQLETKNKEIQALNAKVSKLENKIKKKEPEEQKLKEEIEEKVQELRYLRSQVTDAQTTVA 266

Query: 637 MI 638
           +I
Sbjct: 267 VI 268


>gi|156377045|ref|XP_001630668.1| predicted protein [Nematostella vectensis]
 gi|156217693|gb|EDO38605.1| predicted protein [Nematostella vectensis]
          Length = 190

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 56/158 (35%), Gaps = 14/158 (8%)

Query: 483 REAALLL--TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           RE   L    +  +  ++    + +   R    EL  L+  L + + E      E +   
Sbjct: 35  RELVALYRELVALYRELVALYRELVTLYR----ELVALYRELAALYGELVALYRELVALY 90

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
              R    L ++L    R+         A   ++   Y++ + LY+    L R+   + +
Sbjct: 91  ---RELVALYRELVTLYRELVALYRELVALYGELVTLYRELVTLYRDLVALYRELVALYR 147

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           ++  +  +        L   L  ++ ++  +  + A +
Sbjct: 148 ELVALYRE-----LVALYRELVALYRELVTLYRELAAL 180


>gi|119574995|gb|EAW54610.1| discs, large homolog 5 (Drosophila), isoform CRA_b [Homo sapiens]
          Length = 1649

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/331 (9%), Positives = 87/331 (26%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +L       +     
Sbjct: 193 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNADLSRLEQLGEENQRLLKQTEMLTQQRDTA 252

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E                      
Sbjct: 253 IQLQHQCALSLRRFEAIH--HELNKATAQNKDLQWEMELLQSELTELRTTQVKTAKESEK 310

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
               +D      Y   + +R Q + +  K  TE        K +   +         ++ 
Sbjct: 311 YREERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAANEEMEALRQ 369

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                 +    + +E  +L                         + + L   L     E 
Sbjct: 370 IKDTVTMDAGRANKEVEILR-----------------------KQCKALCQELKEALQEA 406

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 407 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 463

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+   +   +  +   L++ 
Sbjct: 464 DVSRELKELKEQME--SQLEKEARFRQLMAH 492


>gi|109734611|gb|AAI17691.1| Myosin, heavy chain 10, non-muscle [Homo sapiens]
          Length = 1976

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 876  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 935

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 936  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 995

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 996  KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1049

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  L  A  E    +++    +        
Sbjct: 1050 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKE---EELQGALARGDDETLHK 1106

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1107 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1154



 Score = 37.2 bits (84), Expect = 7.9,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1391 EEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQEPDDLTVDLDHQRQVASNLEKKQ 1450

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1451 KKFDQLLAEEKSISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1505

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1506 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1565

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1566 EVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEID 1625

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1626 LKDLEAQIEA 1635


>gi|91788828|ref|YP_549780.1| hypothetical protein Bpro_2968 [Polaromonas sp. JS666]
 gi|91698053|gb|ABE44882.1| hypothetical protein Bpro_2968 [Polaromonas sp. JS666]
          Length = 153

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 9  KDLLIHIP--ISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66
            +   +P  +S    Q +    R            C FH     S   N + G + C S
Sbjct: 3  DFIRDQLPEPLSYFESQGLKLSPRGKWRTTE-----CKFHSGSD-SMRINTTSGAWVCMS 56

Query: 67 CHV-KGDHLSFLSALLGCSFIESVQRL 92
          C    GD L++  A     FI + + L
Sbjct: 57 CAAKGGDVLAYHMAANCLDFISAAKDL 83


>gi|297700006|ref|XP_002827057.1| PREDICTED: myosin-10 isoform 2 [Pongo abelii]
          Length = 1985

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 885  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 944

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 945  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1004

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1005 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1058

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  L  A  E    +++    +        
Sbjct: 1059 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKE---EELQGALARGDDETLHK 1115

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1116 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1163



 Score = 37.2 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 76/243 (31%), Gaps = 22/243 (9%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1400 EEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQ 1459

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1460 KKFDQLLAEEKSISARHAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1514

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +                    + +L++  R            + ++
Sbjct: 1515 NKQLRADMEDLMSSKDDVGKN--------------VHELEKSKRALEQQVEEMRTQLEEL 1560

Query: 575  RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                Q       R  +  +  +   ++  Q   +   EK  +LI  + E+  ++     Q
Sbjct: 1561 EDELQATEDAKLRLEVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQ 1620

Query: 635  EAM 637
             A+
Sbjct: 1621 RAL 1623


>gi|291543861|emb|CBL16970.1| primary replicative DNA helicase [Ruminococcus sp. 18P13]
          Length = 445

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 35/122 (28%), Gaps = 11/122 (9%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K        E ++L  ++ +  +L      ++   + N + ++L+  +   F        
Sbjct: 12  KELPYSIEAEQSILGAILVNSDVLPTVVDLISPECFYNEQHRQLYGIMLRLFTSGSQADI 71

Query: 535 -----EEIHQRLCERG------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                E +  R+ E           L+ Q+      A       E   +       + + 
Sbjct: 72  VVVLNEALQARIFENAQEGRKYLAALVDQMPSVSNVASYCKIVAEKYYIRSLAYVAREVL 131

Query: 584 LY 585
             
Sbjct: 132 DR 133


>gi|228907512|ref|ZP_04071369.1| hypothetical protein bthur0013_16790 [Bacillus thuringiensis IBL
           200]
 gi|228852004|gb|EEM96801.1| hypothetical protein bthur0013_16790 [Bacillus thuringiensis IBL
           200]
          Length = 358

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 94/307 (30%), Gaps = 46/307 (14%)

Query: 30  RKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY--YCFSCHVKGDHLSFLSALLGCSFIE 87
            K N        CCP H E  PSF  +     Y  +CF C   G  +  +      +F+ 
Sbjct: 42  SKKNDNGNYIMCCCPNHTETRPSFGIS-KTPPYHTHCFCCGYLGT-IDCVIET---AFV- 95

Query: 88  SVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDER 147
                       L   +            L  L+   ++++  + +   D        ++
Sbjct: 96  ------------LEQGNG-----------LKALL---SNYYFENNRKPLDISKLLATRKK 129

Query: 148 GIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLI 207
            I ++ +    L    + ++  +                 +            R +  ++
Sbjct: 130 CIKANTLSEETLKKLDEEKFKNQGIYNVAMSYLINQRGINMETLDTYEIKIDVRNK-CIV 188

Query: 208 FPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVR 267
           FP R+  G +     R +          +      +K   L+                  
Sbjct: 189 FPQRTRNGDLRFLQKRKIGSHYKGSKFINEGLP--NKKDILFGLHLINQ-------LRTS 239

Query: 268 RNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIV-LCFDGDDP 326
            N    + +VE  +DV+S  Q G+   V+  G  L + Q+R L      IV L FD D  
Sbjct: 240 PNRIKRVRIVESPIDVMSNYQVGIP-AVAINGKLLFKNQIRELHLAGIEIVDLFFDNDKA 298

Query: 327 GLRAAYK 333
           G  A  K
Sbjct: 299 GKDATQK 305


>gi|195433044|ref|XP_002064525.1| GK23893 [Drosophila willistoni]
 gi|194160610|gb|EDW75511.1| GK23893 [Drosophila willistoni]
          Length = 1717

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 83/234 (35%), Gaps = 19/234 (8%)

Query: 407  HLKNCINHIKDQKLRYYYSQAI----RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
              +     +     R    + +      + +   ++ + +     +  +  AR  D K  
Sbjct: 959  RAQELHQKLSSPSRRRSLQETLKKYQAKQARAQQKRALLQQEKAAKLQQLFARVEDVKAA 1018

Query: 463  SQRLMQSSLVK--GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLW 519
             ++L++   +K  G+L +    RE  L   +        ++ ++L +I +  N E Q   
Sbjct: 1019 KKQLIEDKRLKMQGRLQRAAENREQYLKQII----EKAHDEEKKLKEINFIKNIEAQNKR 1074

Query: 520  SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
              L     E      E   Q + +     + ++L ++        A  +     + +  +
Sbjct: 1075 LDLLESSKE-----TEGRLQEIEQERQKRVEEKLAKEAAVERRRQALEK---ERILKLEK 1126

Query: 580  QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                  ++ + + + +E+ E+Q   +  +   ++   L+++  +      +++ 
Sbjct: 1127 MNETRLEKEQRIGKMQEQKERQRQALAREKARDREERLLALHMQKQQTTEELQR 1180


>gi|170100535|ref|XP_001881485.1| smc-domain containing protein [Laccaria bicolor S238N-H82]
 gi|164643444|gb|EDR07696.1| smc-domain containing protein [Laccaria bicolor S238N-H82]
          Length = 791

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 68/225 (30%), Gaps = 28/225 (12%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           +   +Q L ++            +  A+ R +     + +     +        L+EA  
Sbjct: 245 LAAEIQDLTREKDDLAMRLKAAEEAAAKSRAESEERIQHLLDGNAELNEGNASLLKEAD- 303

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
                    +L E  +     R    + + L + L S          E+  Q   +    
Sbjct: 304 --------RLLDESKEARERARVLEEDKETLVAELRSLKARHDLLTQEKAKQ---DEELR 352

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA---- 603
            + ++ +    +     A  E    +V    Q  +AL +    L+ +  E++ +I     
Sbjct: 353 LVQEETEDLAAELRALRAEKEELRDEVEAEKQTRVALEEEKAGLATEIRELQAEIDTRDE 412

Query: 604 ------------QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                       +  +    E+ A L   L     ++ +  + EA
Sbjct: 413 ELETKSSRVSDLEWDSADMKEQMAQLREDLLRTSRRLVEARNGEA 457


>gi|148986048|ref|ZP_01819069.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP3-BS71]
 gi|147921882|gb|EDK73008.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae
           SP3-BS71]
 gi|301800079|emb|CBW32676.1| ABC transporter ATP-binding protein [Streptococcus pneumoniae
           OXC141]
          Length = 633

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KATAEM-SQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAKIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|197116967|ref|YP_002137394.1| ATP-dependent chaperone ClpB [Geobacter bemidjiensis Bem]
 gi|197086327|gb|ACH37598.1| ATP-dependent chaperone ClpB [Geobacter bemidjiensis Bem]
          Length = 864

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 64/190 (33%), Gaps = 6/190 (3%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++K+I + +   R +++          +  +++    K +   K  +++ A++       
Sbjct: 320 YRKHIEKDAALERRFQQVFAGEPSVEETISILRGLKEKYENYHKIRIKDGAIIAAATLSD 379

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S   E        I   +  +        L  
Sbjct: 380 RYITDRFLPDKAIDLIDEAASRLRIEIDSKPTEIDEIDRRIIQLEIERQAM------LRE 433

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           Q           E  +  ++    +    +KR   L +   E++++  +   + +  +  
Sbjct: 434 QDTKVLDRLKKLEEELDGLKAQSAKLNEHWKRETNLLKDLGELKQRKEEKAEEAKRAERD 493

Query: 616 ILISILHEVH 625
            L++   E+ 
Sbjct: 494 GLLARTAEIR 503


>gi|119610456|gb|EAW90050.1| myosin, heavy polypeptide 10, non-muscle, isoform CRA_c [Homo
            sapiens]
          Length = 1976

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 876  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 935

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 936  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 995

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 996  KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1049

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  L  A  E    +++    +        
Sbjct: 1050 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKE---EELQGALARGDDETLHK 1106

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1107 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1154



 Score = 37.9 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1391 EEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQ 1450

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1451 KKFDQLLAEEKSISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1505

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1506 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1565

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1566 EVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEID 1625

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1626 LKDLEAQIEA 1635


>gi|114669117|ref|XP_001166502.1| PREDICTED: myosin, heavy polypeptide 10, non-muscle isoform 6 [Pan
            troglodytes]
          Length = 1986

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 886  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 945

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 946  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1005

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1006 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1059

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  L  A  E    +++    +        
Sbjct: 1060 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKE---EELQGALARGDDETLHK 1116

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1117 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1164



 Score = 37.9 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1401 EEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQ 1460

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1461 KKFDQLLAEEKSISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1515

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1516 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1575

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1576 EVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEID 1635

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1636 LKDLEAQIEA 1645


>gi|157165418|ref|YP_001466773.1| magnesium transporter [Campylobacter concisus 13826]
 gi|112800148|gb|EAT97492.1| magnesium transporter [Campylobacter concisus 13826]
          Length = 455

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 8/126 (6%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            E ++L      + +E       E+ Q L      +  ++L  +  +        +  I 
Sbjct: 6   EEAKELIDQHLDENLEDGELSAYELAQHLKT--LKKHDEELFAKYLEKLDPEILGDVAIE 63

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQ----IAQVTAKGEAEKTAILISIL-HEVHIQ 627
                 +  +      +++    EE+E      + Q     + +K   L + L  E   +
Sbjct: 64  LPDHMLKDVIDTLPAEKIVEA-LEELESDDATDLLQYIEDIDEDKARELFNELDKENQNE 122

Query: 628 IHQIES 633
           I ++ S
Sbjct: 123 ILRLRS 128


>gi|83405529|gb|AAI10535.1| CCHCR1 protein [Homo sapiens]
          Length = 746

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 531 LQLEVARQCQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 590

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 591 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 650


>gi|20093122|ref|NP_619197.1| chromosome segregation protein [Methanosarcina acetivorans C2A]
 gi|19918459|gb|AAM07677.1| chromosome segregation protein [Methanosarcina acetivorans C2A]
          Length = 1175

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 70/217 (32%), Gaps = 25/217 (11%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + + ++ L        S             +     +    S   K    ++ + REA 
Sbjct: 686 ELAEEIKSLDASRNAAISKQDSIESHVF---ELSRKIRDCEASISRKELELQEIAGREAK 742

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE------EIHQR 540
           L         +L+ +  +L  I     EL+     + ++  E++    E      E+  +
Sbjct: 743 LA-------ELLEAKQADLRAIEEARTELRAEMDRVIAEKAEKEAVASELEDQVAELEAK 795

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L +    E+        + A             +R       AL        ++  E ++
Sbjct: 796 LADSPLPEI-------NKKAEFVDEEIRRLEGRIRDTEASLNALQLEKEYAEQKIAEAKE 848

Query: 601 QIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQE 635
            I ++  K     EK   L + + E+  ++ + +++E
Sbjct: 849 LIRELDEKKASRREKVDSLKAKIAELEARLEEKQNRE 885


>gi|47224673|emb|CAG03657.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1533

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 64/205 (31%), Gaps = 15/205 (7%)

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-SQRLMQSSLVKGKLSKKPS 481
            Y+  ++ +L QL ++   E        +K     ++     + L +    + K+     
Sbjct: 425 LYNGQLQKKLHQLEEQLDCEMQAKDELEQKCKNATNRLEKLVKELDKEMSSRQKVEASLR 484

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNN-------ELQKLWSFLFSDFVEQKYFLP 534
             E      L+ H     +  + L  +  +         EL  L   L     + +    
Sbjct: 485 QLERD--RALLQH-----QSAENLRKVEIETERKRGLENELNNLRDQLEDLRKKNQDSQM 537

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                   ++   E    L  +   A     +        +        + +R   L ++
Sbjct: 538 SNEKNIQLQKQLDETNAVLQAEQEAAARMKKSQTEVQKHAQSLEASLGEMKERCSQLEKE 597

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS 619
           + E+EK++  + A+ + E+    + 
Sbjct: 598 RMELEKRLMALQAQLDEERRDRNLR 622


>gi|6472600|dbj|BAA87057.1| unconventional myosin heavy chain [Chara corallina]
          Length = 2167

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 46/148 (31%), Gaps = 12/148 (8%)

Query: 498  LQEQYQELADIRYDNNELQKLWSF---LFSDFVEQKYFLPEEIHQRLC---------ERG 545
            ++E    + +  +     Q L +    L     + +    +   Q L           + 
Sbjct: 1462 IREPEPAIGETEFTEANSQALRAENQTLKQQLEQLESQDLQRNLQHLEANSQALRAENQT 1521

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
              + L+QL+ Q     L      +  +       +        + L R  + +E +   +
Sbjct: 1522 LKQQLEQLESQDLQRNLQHLEANSQALRAENQTLKQQLEQLESQDLQRNLQHLEAKCQAL 1581

Query: 606  TAKGEAEKTAILISILHEVHIQIHQIES 633
             A+ E  K  +      ++   +  +E+
Sbjct: 1582 RAENETLKQQLEQLESQDLQRNLQHLEA 1609



 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 57/138 (41%), Gaps = 9/138 (6%)

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            +E   ++  +  +N++L++L          ++          L      ELL + + QV+
Sbjct: 979  KEVLDKVEALSEENSKLKELVEDYEKKKALEESSAKRIEEADLKRDAIQELLNRSEEQVQ 1038

Query: 559  D--AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
            D  +   S  +E   + +     +  AL  +   L  +K+++++ +  + A      +  
Sbjct: 1039 DLISENQSLQSEKLNLQLDNRILRQQALSMK--DLELEKQDLQRNLQHLEA-----NSQA 1091

Query: 617  LISILHEVHIQIHQIESQ 634
            L +    +  Q+ Q+ESQ
Sbjct: 1092 LRAENQTLKQQLEQLESQ 1109



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 91/281 (32%), Gaps = 23/281 (8%)

Query: 362  FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
              R       +  +  +   V+ +     + R  +  D         +     +  Q  +
Sbjct: 920  IARNSELAKLKFAMEGAQAQVEQMKILLAKEREGHEADLAQAKVAAAQLLEAEMSAQASK 979

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                  + D+++ L ++          Y KK A        ++R+ ++ L +  + +  +
Sbjct: 980  -----EVLDKVEALSEENSKLKELVEDYEKKKALEESS---AKRIEEADLKRDAIQELLN 1031

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
              E  +   +  + ++  E+     +++ DN  L++    +    +E++        Q L
Sbjct: 1032 RSEEQVQDLISENQSLQSEKL----NLQLDNRILRQQALSMKDLELEKQDLQRN--LQHL 1085

Query: 542  C---------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                       +   + L+QL+ Q     L      +  +       +        + L 
Sbjct: 1086 EANSQALRAENQTLKQQLEQLESQDLQRNLQHLEANSQALRAENQTLKYQLEQLESQDLQ 1145

Query: 593  RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            R  + +E     + A+ +  K  +      ++   +  +E+
Sbjct: 1146 RDLQHLEANSQALRAENQTLKQQLEQLESQDLQRNLQHLEA 1186


>gi|332251197|ref|XP_003274734.1| PREDICTED: myosin-8 [Nomascus leucogenys]
          Length = 1937

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +    +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLEFNQVKSEVDRKIAEKDEEIDQLKRNHTRVVETMQSTLDAEIRSRNDALRVKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1624 DLNEMEIQLNHANRLAAESLRNYRNTQGILKETQLHLDDALQ-----GQEDLKEQ--LAI 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S  TE                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 VSQLQSEVEEVIQESRNTEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828


>gi|310791103|gb|EFQ26632.1| hypothetical protein GLRG_02452 [Glomerella graminicola M1.001]
          Length = 2388

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/254 (9%), Positives = 87/254 (34%), Gaps = 27/254 (10%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL---RYYYSQAIRDRLQQLFQKYI 440
             + ++          +   +L   +K  +   +       R    + ++D+++Q  +   
Sbjct: 889  RIIQKNFNTYLDLMENPWWQLVSKMKPLLGATRSATEVKKRDTMIRQLQDKMRQEAED-- 946

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                       ++    D++     +++              +E       +    + ++
Sbjct: 947  -----------RHRLEEDRRNVHSEMIRIQQTLESERALALDKEEIFKRLQVRETELEEK 995

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
                + D     ++L  L         ++     E+   +L +     L+ +L+++  + 
Sbjct: 996  LSGAIEDQERLEDQLDDLLEA-----KKRAEQDVEKYRAQLEQAAL--LIARLEQEKSEL 1048

Query: 561  GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
               +   E +I ++ Q   +     ++ RLL  + + ++ Q+     K   +  + L+ +
Sbjct: 1049 SARTEELERSIQEISQKQSE---RSEQERLLEEEIKMLQSQLNLKDRKA-RDLESKLLKV 1104

Query: 621  LHEVHIQIHQIESQ 634
              ++ +++   + +
Sbjct: 1105 DQDLEVKLRTAQKE 1118



 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 23/236 (9%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG--------PSQRLMQS 469
            ++ R      I  R Q + + YI     Y R ++  A    QK          +      
Sbjct: 851  EEQRDALITEIMSRFQSVARGYIQRRVAYKRLFRTEATRIIQKNFNTYLDLMENPWWQLV 910

Query: 470  SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            S +K  L    S  E     T+I    +  +  QE  D      + + + S +      Q
Sbjct: 911  SKMKPLLGATRSATEVKKRDTMIR--QLQDKMRQEAEDRHRLEEDRRNVHSEMIRI---Q 965

Query: 530  KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-F 588
            +    E            E+ K+L  +  +     +    +   +       L   KR  
Sbjct: 966  QTLESERALAL----DKEEIFKRLQVRETELEEKLSGAIEDQERLEDQLDDLLEAKKRAE 1021

Query: 589  RLLSRQKEEIEKQ---IAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEAMIE 639
            + + + + ++E+    IA++  +      +T  L   + E+  +  +   QE ++E
Sbjct: 1022 QDVEKYRAQLEQAALLIARLEQEKSELSARTEELERSIQEISQKQSERSEQERLLE 1077



 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/279 (10%), Positives = 84/279 (30%), Gaps = 16/279 (5%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
              +K +   L         + E++  +    R + +         +   +    + QA  
Sbjct: 1970 QAKKRLQHELEDYRNQRANDIEDKEMSMEQTRKKYQAEFATLTKELDLAREEKLFKQAEI 2029

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             RL++      ++          +   +++      L      + +     S  +  ++ 
Sbjct: 2030 ARLREELDDLRSK--WDDEVLNSSTWSKEKARLESTLADVVSSRDEAVNAHSDAQGKIVT 2087

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD---FVEQKYFLPEEIHQRLC-ERG 545
             L    ++     +  ++      E + + + L        +        +      ++ 
Sbjct: 2088 LLSQVRSLRASVDEVTSERDSLVREKRNIEARLEEAKAGLEDLTNGDSASLRDAANIDKE 2147

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ- 604
              EL   L ++   A               +  ++A+   +    L + K  +EK + + 
Sbjct: 2148 MLELKSSLAQKEDIAAAAVEKMRRAEALASEMQKEAMVEREASTQLQKDKAALEKALNEI 2207

Query: 605  ------VTAKGEAEKTAI---LISILHEVHIQIHQIESQ 634
                  +  KG +  +     L   + E+  Q+ + E++
Sbjct: 2208 QIRCVDLETKGYSSASHDIKFLHKRIQELESQLEEHENE 2246


>gi|260888718|ref|ZP_05899981.1| replicative DNA helicase [Selenomonas sputigena ATCC 35185]
 gi|330839880|ref|YP_004414460.1| replicative DNA helicase [Selenomonas sputigena ATCC 35185]
 gi|260861471|gb|EEX75971.1| replicative DNA helicase [Selenomonas sputigena ATCC 35185]
 gi|329747644|gb|AEC01001.1| replicative DNA helicase [Selenomonas sputigena ATCC 35185]
          Length = 441

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 7/71 (9%), Positives = 25/71 (35%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++       E A+L  ++  P  +    +EL+   +     + ++  +       +    
Sbjct: 3   RMPPASIEAEQAVLGAMLLKPDAVTTAAEELSADDFYRETHRLIFEAMMELKERTEPVDL 62

Query: 535 EEIHQRLCERG 545
             + ++L +  
Sbjct: 63  VTLTEQLKKAD 73


>gi|187956363|gb|AAI50635.1| MYH10 protein [Homo sapiens]
 gi|219841954|gb|AAI44669.1| MYH10 protein [Homo sapiens]
          Length = 1985

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 885  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 944

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 945  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1004

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1005 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1058

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  L  A  E    +++    +        
Sbjct: 1059 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKE---EELQGALARGDDETLHK 1115

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1116 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1163



 Score = 37.9 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1400 EEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQ 1459

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1460 KKFDQLLAEEKSISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1514

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1515 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1574

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1575 EVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEID 1634

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1635 LKDLEAQIEA 1644


>gi|169829420|ref|YP_001699578.1| trigger factor (TF) [Lysinibacillus sphaericus C3-41]
 gi|238688199|sp|B1HVE6|TIG_LYSSC RecName: Full=Trigger factor; Short=TF
 gi|168993908|gb|ACA41448.1| Trigger factor (TF) [Lysinibacillus sphaericus C3-41]
          Length = 429

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 22/164 (13%)

Query: 495 PAILQEQYQELADIRYDNNELQK-----------------LWSFLFSDFVEQKYFL-PEE 536
           P +  E  +EL         L+                  L   L     E   F  P  
Sbjct: 249 PELNDEFAKELDSEVESVEALRAKIKEQTAAQKVAESDAALRDELVEKASENAEFEVPAG 308

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +     +R   E  ++L  Q  +  L+   +  +  D+R   ++      R  L      
Sbjct: 309 MINSETDRMLQEFGQRLQTQGMNLDLYYQFSGQSEEDLRGQMKEEAESRVRVSLTLEAIA 368

Query: 597 EIEK-QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           E EK +  +   + E EK A   ++  E   QI       A++E
Sbjct: 369 EAEKIEATEADIEAELEKMAAQFNMTKE---QITGALGGTAVLE 409


>gi|145351791|ref|XP_001420246.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580480|gb|ABO98539.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1109

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 64/196 (32%), Gaps = 13/196 (6%)

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
             KK  +  D      +    +L +   + +    E  L   L        E    L   
Sbjct: 497 PSKKPTKRGDIDASDAQKEIKTLNEKLANMRNERAE--LRAQLDQANEAFHEANDRLESE 554

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPE------EIHQRLCERGFGELLKQLDRQVRDAGL 562
           R    ++      L     E K           +    L      EL  +L + V     
Sbjct: 555 RASKADIVDTIQMLERQLKESKEAAIASDNATTDKLDDLTAIQLQELRDELQQVVVLEQK 614

Query: 563 WSATTEANIVDVRQGYQQ---ALALYK-RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
                 A+  ++++  +Q    ++ ++ +      +  E+E +I  +  + E +K  +  
Sbjct: 615 LKRAEAAHAEELKETAEQNGADISEWQNKLHEADSRAGELEAEIRALRLEYEEQKAMVTK 674

Query: 619 SILHEVHIQIHQIESQ 634
            +L E+  Q+ ++++ 
Sbjct: 675 EMLDELE-QLREMKNT 689


>gi|123421285|ref|XP_001305956.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121887504|gb|EAX93026.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2271

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 102/280 (36%), Gaps = 9/280 (3%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                  +KL  E   L   L  ++++ ++     +RA  E        +  D+KL+   
Sbjct: 629 KEANDEIKKLENEKDDLQSQLSDKDSKLQNAMREKDRANNENATLKQQINECDEKLKKET 688

Query: 425 SQAIR--------DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + I+        +R          +      + ++  + +D +    +   + L K   
Sbjct: 689 GEKIKLNGQKGDLERELATANASAQQQKEATEFAQQQVQEKDARNKELQNKINDLQKKAN 748

Query: 477 SKKPSLREAALLLTLINH-PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           +     ++   L ++++     + ++  ++ + + +  E +K  S L       K    E
Sbjct: 749 AADNLQQQVDQLKSMLDDANKSINDKDSQINEKQKELIETRKKASALEPTKQSLKDTQAE 808

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
              ++          ++L+R++++             D+++     +        L +Q 
Sbjct: 809 LTEKQNDLNNANNKNRELERELKELKKQIGDLNRENNDLKEQLDDKVKNDDIIEKLRKQI 868

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+  +I ++ ++   + ++ L   ++E+     ++E  E
Sbjct: 869 DELNAKIQELQSQKPVDNSSALEEKINELQKAKQELEETE 908



 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 83/231 (35%), Gaps = 15/231 (6%)

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
            + IK +       + + + + +  +   T     G+  + N  +++ +G    L + + 
Sbjct: 364 NDRIKAESKANTAERELINAIAEGEELKQTNKQLNGQLNEMNNNYKELQGKLNDLEKKAN 423

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                +++    E  L        A    +  ++ +++   N+L+     L     E   
Sbjct: 424 QLENANQRIQDLEQEL----AESQAESNGKDAKINELQKKANQLEPTEKKLVDKQNENDK 479

Query: 532 FLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              E     L ++     + LK  + +V++    +   E ++ +      Q      +  
Sbjct: 480 LQKE--LDELKDKYDQLEKALKAAENRVKELLSQNEKLENSLDNANNLSLQKGDELSKRN 537

Query: 590 L----LSRQKEEIEKQIAQVTAKGEAEKTAILIS---ILHEVHIQIHQIES 633
                L ++ +E+E ++  + ++ + EK   L +    +  +  Q+ Q + 
Sbjct: 538 ETLADLKKRNQELEARVRDLESQNDDEKDNELAAKDSEIQNLKSQLEQTKK 588


>gi|119626575|gb|EAX06170.1| centromere protein E, 312kDa, isoform CRA_b [Homo sapiens]
          Length = 2664

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 74/214 (34%), Gaps = 16/214 (7%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
              + +  + L                   +    K       +      +L K+   +  
Sbjct: 1802 DKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSL 1861

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L    I +  + Q+ ++ L +++    E   L         E      +++ + L E  
Sbjct: 1862 TLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRR-----VEETLKLERDQLKESLQETK 1916

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSRQKEEIEKQIAQ 604
              +L  ++ ++++ A + S   +  +  +R+   +  + +    + L + K+E++K+I +
Sbjct: 1917 ARDL--EIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQE 1974

Query: 605  VTA--------KGEAEKTAILISILHEVHIQIHQ 630
            +          K +   +   I+ + ++  Q   
Sbjct: 1975 LQKKELQLLRVKEDVNMSHKKINEMEQLKKQFEA 2008


>gi|39945038|ref|XP_362056.1| hypothetical protein MGG_04501 [Magnaporthe oryzae 70-15]
 gi|145011392|gb|EDJ96048.1| hypothetical protein MGG_04501 [Magnaporthe oryzae 70-15]
          Length = 625

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 79/257 (30%), Gaps = 17/257 (6%)

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            +   + +         +KD+++R    +     L+       T+ S     + K ++  
Sbjct: 18  HEAEMKHQREALESTIIVKDEEVRRTRVR--STMLRDDVATIRTQLSQQTDRYDKLSKQH 75

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP--------AILQEQYQELADIR 509
            +             + +   K   RE   L   +            +L E+     ++ 
Sbjct: 76  TEARSKLVASTRKSDEQEKKLKAQAREILNLKAELQSLNGVSQDSTKMLSEKLALTRELA 135

Query: 510 YDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLC---ERGFGELLKQLDRQVRDAGLWSA 565
               EL+ L S L +      +    E     L            + + RQ         
Sbjct: 136 NLKPELEHLRSQLANHSEMLAEKLALERQVNTLEVELANEKRAAQRAIQRQETKEVEVEE 195

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE---KTAILISILH 622
                I D+ +         +R +  + ++ E+E ++ Q   + EA+   +         
Sbjct: 196 ELRQQIQDLEKKLANEKRAAQRAKQDADKETELEDRLRQQADEFEAQLKTQQTEAAKARR 255

Query: 623 EVHIQIHQIESQEAMIE 639
           E+  Q+ ++ +Q   I+
Sbjct: 256 ELERQLAELTAQNEFID 272


>gi|41406064|ref|NP_005955.1| myosin-10 [Homo sapiens]
 gi|114669119|ref|XP_001166541.1| PREDICTED: myosin-10 isoform 7 [Pan troglodytes]
 gi|215274129|sp|P35580|MYH10_HUMAN RecName: Full=Myosin-10; AltName: Full=Cellular myosin heavy chain,
            type B; AltName: Full=Myosin heavy chain 10; AltName:
            Full=Myosin heavy chain, non-muscle IIb; AltName:
            Full=Non-muscle myosin heavy chain B; Short=NMMHC-B;
            AltName: Full=Non-muscle myosin heavy chain IIb;
            Short=NMMHC II-b; Short=NMMHC-IIB
 gi|109734615|gb|AAI17692.1| Myosin, heavy chain 10, non-muscle [Homo sapiens]
 gi|119610455|gb|EAW90049.1| myosin, heavy polypeptide 10, non-muscle, isoform CRA_b [Homo
            sapiens]
          Length = 1976

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 876  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 935

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 936  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 995

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 996  KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1049

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  L  A  E    +++    +        
Sbjct: 1050 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKE---EELQGALARGDDETLHK 1106

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1107 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1154



 Score = 37.9 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1391 EEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQ 1450

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1451 KKFDQLLAEEKSISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1505

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1506 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1565

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1566 EVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEID 1625

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1626 LKDLEAQIEA 1635


>gi|40060485|gb|AAR37417.1| heat shock protein HSP101 [Zea mays]
          Length = 912

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 10/134 (7%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + I   +        L++   +   A L    
Sbjct: 393 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHA----LEKEKDKASKARLIEVR 448

Query: 567 TEANIVDVRQG-----YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISI 620
            E + + V+       Y++        R L +++EE++  + +   + +  + A L    
Sbjct: 449 KELDDLRVKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAERRMDLARVADLKYGA 508

Query: 621 LHEVHIQIHQIESQ 634
           L E+   I ++ES+
Sbjct: 509 LQEIDAAISKLESE 522


>gi|3387936|gb|AAC28643.1| beta-dystrobrevin [Homo sapiens]
          Length = 398

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +        E AL+ + +             + +   + E + +  +   
Sbjct: 156 PTPTKRLQYSQDIPSHLADEHALIASYVARLQHCARVLDSPSRL---DEEHRLIARYAAR 212

Query: 525 DFVEQKYFL--PEEI-HQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E       P ++       +   +L+ +L+ + R+            E       + 
Sbjct: 213 LAAEAGNVTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEK 272

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 273 AQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEELMKLLKE-EEQKQAAQAT 330


>gi|641958|gb|AAA99177.1| non-muscle myosin B [Homo sapiens]
          Length = 1976

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 876  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 935

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 936  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 995

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 996  KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1049

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  L  A  E    +++    +        
Sbjct: 1050 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKE---EELQGALARGDDETLHK 1106

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1107 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1154



 Score = 37.9 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1391 EEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQ 1450

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1451 KKFDQLLAEEKSISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1505

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1506 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1565

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1566 EVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEID 1625

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1626 LKDLEAQIEA 1635


>gi|297280274|ref|XP_001113604.2| PREDICTED: lamin-A/C [Macaca mulatta]
          Length = 663

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ + ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|302663302|ref|XP_003023295.1| hypothetical protein TRV_02569 [Trichophyton verrucosum HKI 0517]
 gi|291187285|gb|EFE42677.1| hypothetical protein TRV_02569 [Trichophyton verrucosum HKI 0517]
          Length = 1461

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 3/121 (2%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                 EQ+  L +E  Q+  E    +L  +  RQ  +        +A +  + +  +Q  
Sbjct: 1020 IRAKEEQEAALRQE--QQAQEAETEQLKDETRRQEEELAREKEAAQARLKALEEQVRQG- 1076

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
             + K+ +   +Q+ E E +  +     +  +         E+  Q+  +  +E+  +  G
Sbjct: 1077 KIKKQEQKRRKQQAEQEAREKEAKLAAQRAELEAAQERERELQRQLESLGDEESSSDDEG 1136

Query: 643  K 643
             
Sbjct: 1137 P 1137


>gi|284045140|ref|YP_003395480.1| SMC domain protein [Conexibacter woesei DSM 14684]
 gi|283949361|gb|ADB52105.1| SMC domain protein [Conexibacter woesei DSM 14684]
          Length = 1081

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 44/128 (34%), Gaps = 21/128 (16%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                E+    PE   + L +     L ++++R  R              +  +      
Sbjct: 798 LRGLAERLGLEPEPASEALPDEERAALAQRIERLARRRDQLGPVNPLAKDEYEEALAHV- 856

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI--ESQEAMIEG 640
                   L RQ+ ++E  + +            L +++ +   QI +   E+ EA    
Sbjct: 857 ------EELERQRNDLESALRE------------LSTLIRDTDRQIRETFEETFEAAARN 898

Query: 641 FGKMSGRL 648
           F +++G++
Sbjct: 899 FEELAGKV 906


>gi|170061440|ref|XP_001866234.1| 34 kDa salivary secreted protein 34k-2 [Culex quinquefasciatus]
 gi|167879661|gb|EDS43044.1| 34 kDa salivary secreted protein 34k-2 [Culex quinquefasciatus]
          Length = 297

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/123 (9%), Positives = 48/123 (39%), Gaps = 11/123 (8%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            +L+ +   L     E              +       +++++  ++  ++    +    
Sbjct: 26  PDLRVIVRSLAEIHNETAPIKTGGRMTDEVQELKDNFEQEVEQLAKERDVFELDFK---- 81

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             R+  ++   +Y+R  +L +  ++++++I +       E+   L   L  + ++ + ++
Sbjct: 82  --REVLKREGEMYERIHVLKKSIQDLKQRIREAE-----EEFYELAFELVGIRVETNSMD 134

Query: 633 SQE 635
            +E
Sbjct: 135 GKE 137


>gi|149056034|gb|EDM07465.1| myosin, heavy polypeptide 14 [Rattus norvegicus]
          Length = 1848

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/254 (9%), Positives = 72/254 (28%), Gaps = 24/254 (9%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            RE +       + R   E          + ++     ++ +  RL +  +          
Sbjct: 1377 RELQTTQAQLSEWRRRQEEEAAVLEAGEEARRRAAREAETLAQRLAEKTEAVERLERARR 1436

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            R  ++        G  ++L+ +   K +   +    E A +L  +     ++ + +E   
Sbjct: 1437 RLQQELDDATVDLGQQKQLLSTLEKKQRKFDQLLAEEKAAVLRAVEDRERVEAEGREREA 1496

Query: 508  IRYD---------------NNELQKLWSFLFSDFVEQ-------KYFLPEEIHQRLCERG 545
                                 + + L + L +    +                       
Sbjct: 1497 RALSLTRALEEEQEAREELERQNRALRAELEALLSSKDDVGKNVHELERARRVAEQAASD 1556

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
                + +L+ ++  A       E  +  ++   Q    L  R      ++ ++ KQ+   
Sbjct: 1557 LRTQVTELEDELTAAEDAKLRLEVTVQALKA--QHERDLQGRDDAGEERRRQLAKQLRDA 1614

Query: 606  TAKGEAEKTAILIS 619
              + + E+    ++
Sbjct: 1615 EVERDEERKQRALA 1628



 Score = 38.3 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 82/271 (30%), Gaps = 7/271 (2%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQAI 428
             + +L ++  PL+ +  + E          +  EL+      +  ++ +  +       +
Sbjct: 846  QWWRLFIKVKPLLQVTRQDEVLQARAQELQKVQELQQQSAREVGELQGRVAQLEEERARL 905

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             ++L+   +          R   +           +  +       +  +    R    +
Sbjct: 906  AEQLRAEAELCSEAEETRARLAARKQELELVVTELEARVGEEEECSRQLQSEKKRLQQHI 965

Query: 489  LTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              L  H    +   Q+L   +      ++K    L     +      E          F 
Sbjct: 966  QELETHLEAEEGARQKLQLEKVTTEAKMKKFEEDLLLLEDQNSKLSKERRLLEERLAEFS 1025

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE----EIEKQIA 603
                + + +V+         EA I D+    ++     +    L R+ +    E+++Q+ 
Sbjct: 1026 SQAAEEEEKVKSLNKLRVKYEATIADMEDRLKKEEKGRQELEKLKRRLDGESSELQEQMM 1085

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +   + E E    L     E+   + + E +
Sbjct: 1086 EQKQRAE-ELLIQLGRKEEELQSALVRAEEE 1115


>gi|119626574|gb|EAX06169.1| centromere protein E, 312kDa, isoform CRA_a [Homo sapiens]
          Length = 2665

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 74/214 (34%), Gaps = 16/214 (7%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
              + +  + L                   +    K       +      +L K+   +  
Sbjct: 1802 DKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSL 1861

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L    I +  + Q+ ++ L +++    E   L         E      +++ + L E  
Sbjct: 1862 TLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRR-----VEETLKLERDQLKESLQETK 1916

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSRQKEEIEKQIAQ 604
              +L  ++ ++++ A + S   +  +  +R+   +  + +    + L + K+E++K+I +
Sbjct: 1917 ARDL--EIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQE 1974

Query: 605  VTA--------KGEAEKTAILISILHEVHIQIHQ 630
            +          K +   +   I+ + ++  Q   
Sbjct: 1975 LQKKELQLLRVKEDVNMSHKKINEMEQLKKQFEA 2008


>gi|71891671|dbj|BAA25509.2| KIAA0583 protein [Homo sapiens]
          Length = 1952

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/331 (9%), Positives = 87/331 (26%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +L       +     
Sbjct: 336 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNADLSRLEQLGEENQRLLKQTEMLTQQRDTA 395

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E                      
Sbjct: 396 IQLQHQCALSLRRFEAIH--HELNKATAQNKDLQWEMELLQSELTELRTTQVKTAKESEK 453

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
               +D      Y   + +R Q + +  K  TE        K +   +         ++ 
Sbjct: 454 YREERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAANEEMEALRQ 512

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                 +    + +E  +L                         + + L   L     E 
Sbjct: 513 IKDTVTMDAGRANKEVEILR-----------------------KQCKALCQELKEALQEA 549

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 550 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 606

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+   +   +  +   L++ 
Sbjct: 607 DVSRELKELKEQME--SQLEKEARFRQLMAH 635


>gi|307300434|ref|ZP_07580214.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C]
 gi|307318299|ref|ZP_07597734.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83]
 gi|306895981|gb|EFN26732.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83]
 gi|306904600|gb|EFN35184.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C]
          Length = 342

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 13/138 (9%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
             L + L +       F+  +        G  E+L +L+ Q+ +     A  ++   D+ 
Sbjct: 20  DALSTLLMAIMFLLSVFVTAQFLLGREISGKDEVLNRLNSQINELTQLLALEKSGKQDLE 79

Query: 576 QGYQQALALYKRFRLLSRQKEEIE-----------KQIAQVTAKGEAEK--TAILISILH 622
                  A   +      + + +            ++I ++ ++ E E+  +A  +S + 
Sbjct: 80  DSLANLQASLSQSEGERSRLQALLDRGAGSAEVADEKIGRLGSELENERQVSARAMSQIE 139

Query: 623 EVHIQIHQIESQEAMIEG 640
            ++ QI  + SQ A IEG
Sbjct: 140 LLNQQIAALRSQIAAIEG 157


>gi|56708764|ref|YP_170660.1| ClpB protein [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110671236|ref|YP_667793.1| ClpB protein [Francisella tularensis subsp. tularensis FSC198]
 gi|224457970|ref|ZP_03666443.1| ClpB protein [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254371373|ref|ZP_04987374.1| ClpB protein [Francisella tularensis subsp. tularensis FSC033]
 gi|254875628|ref|ZP_05248338.1| clpB protein [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56605256|emb|CAG46402.1| ClpB protein [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321569|emb|CAL09785.1| ClpB protein [Francisella tularensis subsp. tularensis FSC198]
 gi|151569612|gb|EDN35266.1| ClpB protein [Francisella tularensis subsp. tularensis FSC033]
 gi|254841627|gb|EET20063.1| clpB protein [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282160088|gb|ADA79479.1| ClpB protein [Francisella tularensis subsp. tularensis NE061598]
          Length = 859

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    ++   +      +   +     + +  +   E LK+         L    
Sbjct: 390 AIDLVDEAASQIRMEI----DSKPEKMESLYRRIIQLKMQREQLKKEKDDATKKRLEILE 445

Query: 567 TEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISI 620
            E   +D     + + ++      +    L  + E+ + ++ +    G+  K A L    
Sbjct: 446 QEIKGLDSEYKGLEELWKAEKLKMQGTSKLKEELEKAKFELEKYQRVGDLSKMAELQYGK 505

Query: 621 LHEVHIQIHQIESQEA 636
           + E+  QI QIE  EA
Sbjct: 506 IPELEAQIKQIEETEA 521


>gi|301782395|ref|XP_002926614.1| PREDICTED: LOW QUALITY PROTEIN: myosin-15-like [Ailuropoda
            melanoleuca]
          Length = 2099

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 37/393 (9%), Positives = 121/393 (30%), Gaps = 18/393 (4%)

Query: 251  FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310
                  +L K +    R+   S  +L     +  +L    ++   +   +A+++  L+ +
Sbjct: 1496 LDQKQQHLDKRLDDWKRKQEESRAMLEASQREARALGPELLKLRHAYEESAVSQETLQRV 1555

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             K     +          +     ++     +          L   E             
Sbjct: 1556 NKNLQEEISNLTNQVREGKRNLSEMEKAKTQIEQEKTEVQAALEEAEGALE-RNESKILR 1614

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
            F+  ++E+   ++     + E       +++  ++    +  +  + +    +  + +  
Sbjct: 1615 FQLELLEAKAELERKLSEKNEEIENFRRNQQCAIDSLQSSLDSETRSRIEATWLKKNVEG 1674

Query: 431  RLQQL-FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             L ++  Q                      K    +L  S+ +  +L ++ +  E     
Sbjct: 1675 DLSEMELQLSYANRQVSEATNSXGQLQTQVKDLRVQLDDSTHLNSELKEQVATAER---- 1730

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSF-LFSDFVEQKYFLPEEIHQRLCERGFGE 548
                H ++LQ + +EL  +       ++L    L         F  +       ++    
Sbjct: 1731 ----HNSLLQSELEELRSLYKQTECGRRLAEEELLQATERINLFHTQNTRLLSRKKKLEV 1786

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQ 604
             + ++ ++  +A       E                 K+ +     L R ++ +E+ I  
Sbjct: 1787 DVGRMQKEAEEAVQRCQNAEEKAKKAATESANISEELKKEQDTNAHLERMRKNMEQTIKD 1846

Query: 605  VTAKGEAEKTAILI---SILHEVHIQIHQIESQ 634
            +  + +  +   ++     + ++  ++ ++E +
Sbjct: 1847 LQKRLDEAEQRAVMGNRKQIQKLESRVRELEGE 1879


>gi|301611605|ref|XP_002935315.1| PREDICTED: transcription elongation regulator 1-like isoform 2
           [Xenopus (Silurana) tropicalis]
          Length = 1041

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/360 (10%), Positives = 96/360 (26%), Gaps = 42/360 (11%)

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           +     R+ +      +  +D  +  +  A     +       G           +D   
Sbjct: 502 VWTGDERVFFYNPTTRLSMWDRPEDLIGRADVDKIIQEPPHKRGMEDGKKYYKEDQD--- 558

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                 +    K         +   +   E       + +A  E  +    + +K  + R
Sbjct: 559 SAEDANEDEPIKAKKRKKDDPEADKETAMEA------EIKAARERAIVPLDSRMK--QFR 610

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               +          ++                  +       +       + K +K   
Sbjct: 611 DMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERREKKNKIMQ 670

Query: 482 LREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKL-----WSFLFSDF--------- 526
            +E      ++    I  +  + E A     +   + +        LF+++         
Sbjct: 671 AKED--FKKMMEDGKINARSTFSEFAGKHAKDARFKAIEKMKDRETLFNEYMVAARKKEK 728

Query: 527 ------VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
                  E+      ++   L   G     K  D+   D    +  + A   ++ + Y +
Sbjct: 729 EDSKNKGEKVRSDFFDLLSSLHLDGQSRWSKIKDKIENDLRYKAVESSAAREELFKLYIE 788

Query: 581 ALALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            +       + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 789 KIVKNLDTEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 843


>gi|282863576|ref|ZP_06272634.1| DnaB domain protein helicase domain protein [Streptomyces sp. ACTE]
 gi|282561277|gb|EFB66821.1| DnaB domain protein helicase domain protein [Streptomyces sp. ACTE]
          Length = 389

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/185 (9%), Positives = 43/185 (23%), Gaps = 4/185 (2%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
           +   A ++       L                        +        + +  +R +  
Sbjct: 66  WVTDAIDEAGRHVRGLTAAYTHSLISACPRPAHAPVYGRMVLEGAIHRTVAEHAVRLHQV 125

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK----LSKKPS 481
                   ++     +     G       R   +  P       ++         + + +
Sbjct: 126 ARADALQGEVEGALRSADVLTGVLTDLARRWGTEPRPVAPATAPAIGPAIPPPVRADQVA 185

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             E  LL  L   P  + E    L  + + +    +L+  L +     +      +    
Sbjct: 186 EDERFLLAVLTEQPKAMAEVVDWLRPVDFADPAHGQLYRCLGALHHRGEPIDRITLLWEA 245

Query: 542 CERGF 546
             RG 
Sbjct: 246 QRRGL 250


>gi|260818354|ref|XP_002604348.1| hypothetical protein BRAFLDRAFT_124215 [Branchiostoma floridae]
 gi|229289674|gb|EEN60359.1| hypothetical protein BRAFLDRAFT_124215 [Branchiostoma floridae]
          Length = 1263

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 89/254 (35%), Gaps = 25/254 (9%)

Query: 402  AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
             +    ++  I+ ++D       ++   +R +   Q+ + +  G        +++   K 
Sbjct: 860  TKKFKEMQRIISELEDDMEVERSARVKAERARADLQRELDDVEGKLEETSGLSQNEADKN 919

Query: 462  PSQRLMQSSLVKG-KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
              +      + +  + +      E +LL     H  +L E   +L D++   N+ +K   
Sbjct: 920  KRREQDLLKIRRDLEETLATQDAEVSLLRK--KHSDVLAEMSDQLDDLQKGKNKAEKDRD 977

Query: 521  FLFSDFVE---------QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
             L  +  +         ++    E+ ++ L        +K  +     + L S  T    
Sbjct: 978  SLRREAEDLNITFEALSKQKLQLEKANKHLESTFISVTVKIEEHTHIISELQSFKTRLTA 1037

Query: 572  VDVR------QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
             +        +      AL +   +L  Q EE ++ + +     E +     ++ L  V 
Sbjct: 1038 ENAELTRRLEESESTVNALRRNESILKSQVEEAKRALDE-----EIKAKNNTMAQLRSVQ 1092

Query: 626  IQIHQIESQEAMIE 639
             ++  +  QEA+ E
Sbjct: 1093 AEL--LRFQEAIEE 1104


>gi|109489757|ref|XP_001053471.1| PREDICTED: myosin, heavy chain 11, smooth muscle isoform 3 [Rattus
            norvegicus]
          Length = 1979

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 91/286 (31%), Gaps = 23/286 (8%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 884  ELEQRHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 943

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA R ++ Q       +        +K    +       + ++  ++        
Sbjct: 944  RSQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1003

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKY 531
              +E  LL         + +    LA+       L KL      + S+        E+  
Sbjct: 1004 LSKERKLLE------ERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSR 1057

Query: 532  FLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----ALY 585
               E++ ++L      F E +  L  Q+ +  +  A  E  +        + +       
Sbjct: 1058 QELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEITQKNNAL 1117

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIH 629
            K+ R L     ++++ +    A     +     L   L  +  ++ 
Sbjct: 1118 KKIRELEGHVSDLQEDLDSERAARNKAEKQKRDLGEELEALKTELE 1163


>gi|27923756|sp|Q9PTD7|CING_XENLA RecName: Full=Cingulin
          Length = 1360

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 90/278 (32%), Gaps = 18/278 (6%)

Query: 369  TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
             A   L   SL   ++    + E +  +   +        K  ++   D+  R      +
Sbjct: 966  EAQRSLKRLSLEYEELQECYQEEMKQKDHLKKTKNELEEQKRLLDKSMDKLTRE--LDNM 1023

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             +  +   Q   T+   Y    +K      ++   +              +  +++   L
Sbjct: 1024 SNESRGSLQLLQTQLEEYREKSRKEIGEAQKQAKEKTAEAERHQFNSSRMQEEVQK---L 1080

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
               +    + +E  +   D +  +  LQ L   + S    Q     +    ++ E     
Sbjct: 1081 KLALQELQVEKETVEL--DKQMISQRLQSLEQDIESKKRVQDDRSRQV---KVLEDKLKR 1135

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-------FRLLSRQKEEIEKQ 601
            +  +LD +     L +     +   + Q   +      R          L RQ +E++ +
Sbjct: 1136 MEAELDEEKNTVELLTDRVNRSRDQMEQQRAELNQERSRGQDLECDKISLERQNKELKNR 1195

Query: 602  IAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMI 638
            +A +  + +     + L + L E+  ++   E ++A +
Sbjct: 1196 LASMEGQQKPSVNVSHLEAKLQEIQERLQLEEREKATL 1233



 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 79/222 (35%), Gaps = 24/222 (10%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + D+L    ++     +  G    K A  ++ +     L +   ++ K  +    ++
Sbjct: 522 LRTMEDKLMDSKEELSHLRAKGGTSPDKLALLKELEEVQDELDEVLQIRQKQEELLRQKD 581

Query: 485 AALLLT-------LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             L          + NH   L    ++  +      ++Q+L   + +   +Q     E  
Sbjct: 582 RELTALKGALKDEVANHDKDLDRVREQYQN------DMQQLRKNMDNVSQDQLSLESE-- 633

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            ++   +    L ++L+    +   W    + N  ++R   Q+ L +         + +E
Sbjct: 634 -RQKINQVVRNLQRELEESSDEISQWKEMFQKNKEELRSTKQELLQMKLEKEESEDELKE 692

Query: 598 -------IEKQIAQVTA-KGEAEKTAILISILHEVHIQIHQI 631
                  ++ ++AQV     +  + A +   L  V  Q+ Q+
Sbjct: 693 TRDRFSLLQSELAQVKKGSVDPGEVASVRKELQRVQDQLKQL 734


>gi|148237354|ref|NP_001081970.1| cingulin [Xenopus laevis]
 gi|6636514|gb|AAF20208.1|AF207901_1 cingulin [Xenopus laevis]
          Length = 1368

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 90/278 (32%), Gaps = 18/278 (6%)

Query: 369  TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
             A   L   SL   ++    + E +  +   +        K  ++   D+  R      +
Sbjct: 974  EAQRSLKRLSLEYEELQECYQEEMKQKDHLKKTKNELEEQKRLLDKSMDKLTRE--LDNM 1031

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             +  +   Q   T+   Y    +K      ++   +              +  +++   L
Sbjct: 1032 SNESRGSLQLLQTQLEEYREKSRKEIGEAQKQAKEKTAEAERHQFNSSRMQEEVQK---L 1088

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
               +    + +E  +   D +  +  LQ L   + S    Q     +    ++ E     
Sbjct: 1089 KLALQELQVEKETVEL--DKQMISQRLQSLEQDIESKKRVQDDRSRQV---KVLEDKLKR 1143

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-------FRLLSRQKEEIEKQ 601
            +  +LD +     L +     +   + Q   +      R          L RQ +E++ +
Sbjct: 1144 MEAELDEEKNTVELLTDRVNRSRDQMEQQRAELNQERSRGQDLECDKISLERQNKELKNR 1203

Query: 602  IAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMI 638
            +A +  + +     + L + L E+  ++   E ++A +
Sbjct: 1204 LASMEGQQKPSVNVSHLEAKLQEIQERLQLEEREKATL 1241



 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 79/222 (35%), Gaps = 24/222 (10%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + D+L    ++     +  G    K A  ++ +     L +   ++ K  +    ++
Sbjct: 530 LRTMEDKLMDSKEELSHLRAKGGTSPDKLALLKELEEVQDELDEVLQIRQKQEELLRQKD 589

Query: 485 AALLLT-------LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             L          + NH   L    ++  +      ++Q+L   + +   +Q     E  
Sbjct: 590 RELTALKGALKDEVANHDKDLDRVREQYQN------DMQQLRKNMDNVSQDQLSLESE-- 641

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            ++   +    L ++L+    +   W    + N  ++R   Q+ L +         + +E
Sbjct: 642 -RQKINQVVRNLQRELEESSDEISQWKEMFQKNKEELRSTKQELLQMKLEKEESEDELKE 700

Query: 598 -------IEKQIAQVTA-KGEAEKTAILISILHEVHIQIHQI 631
                  ++ ++AQV     +  + A +   L  V  Q+ Q+
Sbjct: 701 TRDRFSLLQSELAQVKKGSVDPGEVASVRKELQRVQDQLKQL 742


>gi|73980426|ref|XP_540083.2| PREDICTED: similar to Rho-associated protein kinase 2
            (Rho-associated, coiled-coil containing protein kinase 2)
            (p164 ROCK-2) (Rho kinase 2) [Canis familiaris]
          Length = 1519

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 953  MSEKQLKQENNHLMEMKMSLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 1012

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 1013 ELKEECEEKTKLCKELQQKKQELQEERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 1072

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 1073 EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 1124

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 1125 NKLKDA--QEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1182

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1183 SDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1227


>gi|327274647|ref|XP_003222088.1| PREDICTED: hypothetical protein LOC100562086 [Anolis carolinensis]
          Length = 2529

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 81/223 (36%), Gaps = 17/223 (7%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           ++ ++LF                     D+K       +S L++   S    L+EA  L 
Sbjct: 593 EKKRKLFGSIAATLQLLQEIHAPEDCQSDRKISVLSEKRSLLLERLESNMMELKEAQALA 652

Query: 490 TL-------INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            +            +LQE+ Q  A++  +  +L K+ +   S              + + 
Sbjct: 653 AIEPSEMNEYRVKELLQEREQLEANLEENLKDLHKIRTPKVSLTENAMEMSELTKQRSIL 712

Query: 543 ERGFGELLKQLDRQVRDAGLWS-ATTEANIVDVRQGYQQALALYK-RFRLLSRQ------ 594
                  L +L+     AG    + ++  + ++R+  +   AL +   R L R       
Sbjct: 713 LENLKSNLNELEEAEALAGTEPGSVSDEKMNELREQSRHLTALLETNERDLQRAQVYAPG 772

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
             E E+++ ++     +EK  +L+  L     ++ + +  EA+
Sbjct: 773 LAEQERELYKMHKL--SEKKQLLLEKLESNQKELQEAQELEAI 813



 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 90/285 (31%), Gaps = 8/285 (2%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +         A +   + +  L ++  KRE          +  +           I+   
Sbjct: 1744 NELKEAQALEAAQPGSIPAKKLKELAQKRERLTEDLEKTVQDIQKTKLSSLGKGQIERPA 1803

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R  Y   +  + Q L +              +     ++K       +  L     +  
Sbjct: 1804 ERELY--ELSQKKQMLLENLKELQEAQALAATQPGIVGEEKRKELAGQKKRLAADLEATM 1861

Query: 480  PSL----REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    R + +  TLI+    L E  ++   +  +    +K      +    Q   + E
Sbjct: 1862 HDIQKAQRASEMPETLIDREKELHELLEKKYLLLENLASSRKELQEAQALADAQPGSVSE 1921

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
               Q L E+    L   L+  V D       T   ++  +   +    L +  +LL    
Sbjct: 1922 SKLQELSEQK-RRLAVSLEATVHDIREIQCRTSQPVIPEKPTEKDFHKLSEWKQLLLEHM 1980

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            E   K++ +  A    E + I    + E++ Q   + E+ EA+++
Sbjct: 1981 ESNLKELQEARALAATEPSRITERKIQELNEQRKILTENLEAVVQ 2025


>gi|307195019|gb|EFN77087.1| STE20-like serine/threonine-protein kinase [Harpegnathos saltator]
          Length = 1559

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 96/277 (34%), Gaps = 24/277 (8%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-RYYYSQAIRDRLQ 433
                    D +++++             +    L       KDQ+  R+   + I +R  
Sbjct: 1132 DENGKVYDDQIFRKQELRELKMLQKMEQKQFQDLSQKAQFNKDQQEKRFEQERQILERST 1191

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI- 492
            +     +           +  +  D +  S+++      + K  ++   +E  LL   I 
Sbjct: 1192 ESDLDALVRQQRQQIERTEAQQEVDLRLASKKIRSEQERELKQFREGLKQELRLLKQEID 1251

Query: 493  -----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ------RL 541
                    +  + + ++L      + + +KL+        E        +         L
Sbjct: 1252 LMPKDKRKSAFKIRKEKLETE---HEDREKLF---LEKLNESHEMSLRRLSDGYREKIAL 1305

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEA--NIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             ER F +  +QL R  R+A +W            + +   + +   +R ++L R ++E+E
Sbjct: 1306 MERQFLQQKQQLMR-AREAAIWEQEERQIHEKQQLLKRQLKDIFFLQRHQMLIRHEKELE 1364

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
             Q+ ++  + E E           +  +I  +++++E
Sbjct: 1365 -QMKRMNQRKEEELIKRQTVERRNLPKRIRNEMKARE 1400


>gi|307269749|ref|ZP_07551079.1| hypothetical protein HMPREF9498_01876 [Enterococcus faecalis
           TX4248]
 gi|306513859|gb|EFM82461.1| hypothetical protein HMPREF9498_01876 [Enterococcus faecalis
           TX4248]
          Length = 622

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 12/85 (14%)

Query: 45  FHDEKTPSFHC-NDSK-GF--YYCFS-----CHVKGDHLSFLSALLGCSFIESVQRLAAI 95
           FH+E  PS       K G   Y CFS     C   G+ +S L   L  S IE V  L  +
Sbjct: 259 FHEESEPSASVFYAEKYGIFLYKCFSESHPYC---GNIISLLERYLKISSIEVVNLLVEL 315

Query: 96  AGVPLPVVDPKIEKKEKIQTDLIRL 120
            G  +       + K   Q     L
Sbjct: 316 TGSTVTNTSQLGQSKFNAQKFKKEL 340


>gi|296191774|ref|XP_002743773.1| PREDICTED: myosin-9 [Callithrix jacchus]
          Length = 1960

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 87/265 (32%), Gaps = 28/265 (10%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EKL ++     +     E E        ++ ELE    +    +++++ R  + QA + 
Sbjct: 880  AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKK 939

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++QQ  Q+   +        +K    +       + ++   +  +       +E  LL  
Sbjct: 940  KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEEQIIMEDQNCKLAKEKKLLE- 998

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +                      E    +L 
Sbjct: 999  -----DRIAEFTTNLMEEEEKSKSLAKLKNK--------------------HEAMITDLE 1033

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L R+ +       T      D      Q   L  +   L  Q  + E+++    A+ E
Sbjct: 1034 ERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVE 1093

Query: 611  AEKTAILIS--ILHEVHIQIHQIES 633
             E     ++   + E+  QI +++ 
Sbjct: 1094 EEAAQKNMALKKIRELESQISELQE 1118



 Score = 37.9 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 70/228 (30%), Gaps = 15/228 (6%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            + ++ +    + +R+   +L  +            K     +D +       ++     K
Sbjct: 1579 QSEEKKKQLVRQVREMEAELEDERKQRSMAVAARKKLEMDLKDLEAHIDSANKNRDEAIK 1638

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +K   +    +  L         + + LA  + +  +L+ + + +     E       
Sbjct: 1639 QLRKLQAQMKDCMREL---DDTRTSREEILAQAKENEKKLKSMEAEMIQLQEELAAAERA 1695

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +   +   EL  ++        L           + Q  ++         L++ + 
Sbjct: 1696 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIVQLEEELEEEQGNTELINDRL 1752

Query: 596  EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIESQ 634
            ++   QI Q+      E++           L     E+ +++ ++E  
Sbjct: 1753 KKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKVKLQEMEGT 1800


>gi|254458851|ref|ZP_05072275.1| replicative DNA helicase [Campylobacterales bacterium GD 1]
 gi|207084617|gb|EDZ61905.1| replicative DNA helicase [Campylobacterales bacterium GD 1]
          Length = 482

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/159 (10%), Positives = 49/159 (30%), Gaps = 16/159 (10%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-------- 535
           E ++L +++  P    E    +    +     Q ++  + +   + +    E        
Sbjct: 11  ERSILSSIVFEPQQFDELSVAIKKDDFYLPAHQDIFGAMITLLQKDQPIDEEFIKKELIK 70

Query: 536 -------EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                   + + L           +D +++D  L            R   ++ L   +  
Sbjct: 71  IKKFDEQVMIEILSANPISNTKAYVD-EIKDKSLKRKLLTLTTEIKRVTVEEELPSAEVV 129

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            ++ ++  EI +       K   + T   +  + E+  +
Sbjct: 130 DIVEKKLYEITQDNQTSDFKDSPKMTFDTMEYIREMKAR 168


>gi|254371967|ref|ZP_04987460.1| ClpB protein [Francisella tularensis subsp. novicida GA99-3549]
 gi|151569698|gb|EDN35352.1| ClpB protein [Francisella novicida GA99-3549]
          Length = 859

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    ++   +      +   +     + +  +   E LK+         L    
Sbjct: 390 AIDLVDEAASQIRMEI----DSKPEKMESLYRRIIQLKMQREQLKKEKDDATKKRLEILE 445

Query: 567 TEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISI 620
            E   +D     + + ++      +    L  + E+ + ++ +    G+  K A L    
Sbjct: 446 QEIKGLDSEYKGLEELWKAEKLKMQGTSKLKEELEKAKFELEKYQRVGDLSKMAELQYGK 505

Query: 621 LHEVHIQIHQIESQEA 636
           + E+  QI QIE  EA
Sbjct: 506 IPELEAQIKQIEETEA 521


>gi|148654508|ref|YP_001274713.1| chromosome segregation protein SMC [Roseiflexus sp. RS-1]
 gi|148566618|gb|ABQ88763.1| condensin subunit Smc [Roseiflexus sp. RS-1]
          Length = 1201

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 65/216 (30%), Gaps = 9/216 (4%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            QA     ++L Q+     +   R   + A  R        ++     +   ++      
Sbjct: 771 LQAAIAEQEELMQREDAARAQVERLHAEEAVQRSADAADDEILAHLRTRLADAEGDVRTA 830

Query: 485 AALLLTLINHPAILQEQYQELAD-IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            A+L T+    A + EQ   LA+ I + + E   L   L     E +  L +    R   
Sbjct: 831 RAILHTVHQALARIDEQRAALAERIEHLHRERATLIDELTQTAAEHQALLAQIDTLRAQI 890

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE------ 597
                 L  L++Q     +        ++D      +A    +R R       E      
Sbjct: 891 EPSEAELSALEQQREAHEVRVQALTTALIDAEAACNRATVDAQRARDRLEVLRERAAGDA 950

Query: 598 --IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             +E                 +   + ++  +I ++
Sbjct: 951 IDVESAAQSCADPSSDANVEDMQRRIDDLKRRIARL 986


>gi|283853740|ref|ZP_06370967.1| ATP-dependent chaperone ClpB [Desulfovibrio sp. FW1012B]
 gi|283570864|gb|EFC18897.1| ATP-dependent chaperone ClpB [Desulfovibrio sp. FW1012B]
          Length = 866

 Score = 43.0 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 72/212 (33%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI +     R ++           +  +++    + ++     + ++A++   +   
Sbjct: 324 YRKYIEKDPALERRFQPVFVDEPTVEDTISILRGLRERFEVHHGVRISDSAIVEAAVLSA 383

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + ++      I   +     + + + S   E      + +   +         ++ D+
Sbjct: 384 RYIADRQLPDKAIDLIDEAAALIRTEIDSLPAELDQINRKVMQLEIEREALK---RETDK 440

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE----IEKQIAQVTAKGEA 611
             R+         AN+ + + GY       K    + R+ +E      + I +     + 
Sbjct: 441 ASRERLEKLEEELANLKEEQGGYLAQWEREKGAVDVLRRIKEDIEKTRQAIEEAERNYDL 500

Query: 612 EKTAIL-ISILHEVHIQIHQIESQEAMIEGFG 642
            + A L    L  +  ++     +EA+ +  G
Sbjct: 501 NRAAELRYGRLSALEKELA--GQEEAIGKAAG 530


>gi|256221751|ref|NP_001157776.1| plectin isoform 1b [Rattus norvegicus]
          Length = 4544

 Score = 43.0 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 23/237 (9%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1325 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1384

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    +  +   +        +  Q+   I+    ELQ L     ++   +   +    
Sbjct: 1385 LEARELQRRMQEEVTRREEAAVDAQQQKRSIQ---EELQHLRQSSEAEIQAKAQQVEAAE 1441

Query: 538  HQRLCERGFGELLK-QLDRQVR-------DAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              R+       +++ QL+   R       +     A  E      RQ  ++A  L ++ +
Sbjct: 1442 RSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQ 1501

Query: 590  LLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIHQIESQEA 636
              S++K + E ++A   +  A+   EK    +  L E+         ++ Q E++ A
Sbjct: 1502 DESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLRQAEAERA 1557



 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2243 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2302

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2303 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2362

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2363 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2422

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2423 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2477

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2478 QEQILQETQALQKSFLSEKDSLLQRERFIE 2507



 Score = 40.6 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2203 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2262

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2263 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2322

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2323 KAEAELLQQQKELAQEQA 2340



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1654 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1713

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1714 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1772


>gi|187930962|ref|YP_001890946.1| chaperone ClpB [Francisella tularensis subsp. mediasiatica FSC147]
 gi|187711871|gb|ACD30168.1| chaperone ClpB [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 859

 Score = 43.0 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    ++   +      +   +     + +  +   E LK+         L    
Sbjct: 390 AIDLVDEAASQIRMEI----DSKPEKMESLYRRIIQLKMQREQLKKEKDDATKKRLEILE 445

Query: 567 TEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISI 620
            E   +D     + + ++      +    L  + E+ + ++ +    G+  K A L    
Sbjct: 446 QEIKGLDSEYKGLEELWKAEKLKMQGTSKLKEELEKAKFELEKYQRVGDLSKMAELQYGK 505

Query: 621 LHEVHIQIHQIESQEA 636
           + E+  QI QIE  EA
Sbjct: 506 IPELEAQIKQIEETEA 521


>gi|254368513|ref|ZP_04984530.1| ClpB protein [Francisella tularensis subsp. holarctica FSC022]
 gi|157121407|gb|EDO65608.1| ClpB protein [Francisella tularensis subsp. holarctica FSC022]
          Length = 859

 Score = 43.0 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    ++   +      +   +     + +  +   E LK+         L    
Sbjct: 390 AIDLVDEAASQIRMEI----DSKPEKMESLYRRIIQLKMQREQLKKEKDDATKKRLEILE 445

Query: 567 TEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISI 620
            E   +D     + + ++      +    L  + E+ + ++ +    G+  K A L    
Sbjct: 446 QEIKGLDSEYKGLEELWKAEKLKMQGTSKLKEELEKAKFELEKYQRVGDLSKMAELQYGK 505

Query: 621 LHEVHIQIHQIESQEA 636
           + E+  QI QIE  EA
Sbjct: 506 IPELEAQIKQIEETEA 521


>gi|254375107|ref|ZP_04990587.1| hypothetical protein FTDG_01296 [Francisella novicida GA99-3548]
 gi|151572825|gb|EDN38479.1| hypothetical protein FTDG_01296 [Francisella novicida GA99-3548]
          Length = 859

 Score = 43.0 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    ++   +      +   +     + +  +   E LK+         L    
Sbjct: 390 AIDLVDEAASQIRMEI----DSKPEKMESLYRRIIQLKMQREQLKKEKDDATKKRLEILE 445

Query: 567 TEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISI 620
            E   +D     + + ++      +    L  + E+ + ++ +    G+  K A L    
Sbjct: 446 QEIKGLDSEYKGLEELWKAEKLKMQGTSKLKEELEKAKFELEKYQRVGDLSKMAELQYGK 505

Query: 621 LHEVHIQIHQIESQEA 636
           + E+  QI QIE  EA
Sbjct: 506 IPELEAQIKQIEETEA 521


>gi|110611865|gb|AAI19558.1| Jakmip3 protein [Mus musculus]
          Length = 463

 Score = 43.0 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 82/222 (36%), Gaps = 12/222 (5%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + +R +L  +  +   E S   +  ++ ++   Q    ++   + LV    +K    +  
Sbjct: 26  EELRAKLTDIQIELQQEKSKVSKVEREKSQELKQVREHEQRKHAVLVTELKTKLHEEKMK 85

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            L    +    + Q + + L  I+  +NE Q+L   L +   +      + +     +  
Sbjct: 86  EL--QAVREALLRQHEAELLRVIKIKDNENQRL-QALLNTLRDGAPDKVKTVLLCEAKEE 142

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL---------YKRFRLLSRQKE 596
             +  +    +++         +  + +      QA  +         +     ++R K+
Sbjct: 143 AKKGFEVEKVKMQQEISELKGAKKQVEEALTMVIQADKIKAAEIRSVYHLHQEEITRIKK 202

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           E E++I ++  + + +        + E+   I ++E + A++
Sbjct: 203 ECEREIRRLEQQLDEKDARRFQLKIAELSAIIRKLEDRNALL 244


>gi|157823279|ref|NP_001101634.1| cingulin-like protein 1 [Rattus norvegicus]
 gi|149028816|gb|EDL84157.1| similar to KIAA1749 protein (predicted), isoform CRA_a [Rattus
           norvegicus]
          Length = 1292

 Score = 43.0 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 91/294 (30%), Gaps = 13/294 (4%)

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             ED             + L   +            + +   +  D++ +L + +     
Sbjct: 560 DNEDATKRKVNLVFEKIQTLKSRATGSAQGNNQAPNSSSEGNDLLDQKNKLILEVSELQQ 619

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            ++ +   +   +  R+R+++  ++    H           R  ++     R     L +
Sbjct: 620 QLQLEMKNHQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEEELRKNLEELFQ 679

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K+ ++    E   L        + +   +  +  R ++ E   L   L     + +  L
Sbjct: 680 VKIEREQHQTEIRDLQ-----DQLSEMHDELDSTKRSEDQEKGALIEELLQAKQDLQDLL 734

Query: 534 PEEIHQ----RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
             +  Q    R  ER    L   L  +V          +       Q  ++++    +  
Sbjct: 735 IAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNV 794

Query: 590 LLSRQKE---EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +   +    E  +  A +  K   E+   L   + E+  +  Q++ Q   ++G
Sbjct: 795 EVLASRSHSSEQTQAEADLREKALKEENEKLQGRIVELERRAAQLQRQMEDVKG 848



 Score = 37.2 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 71/218 (32%), Gaps = 10/218 (4%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              R    Q+++D   QL  K   +        +   +    +   +    ++ +  +   
Sbjct: 1024 TKRQLLEQSLKDLEYQLEAKSHLKDDRSRLVKQMEDKVSQLEIELEEERTNADLLSERIT 1083

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-------QKY 531
                +   +   L+   A  Q+   +   +   N +L+   + L   +         Q  
Sbjct: 1084 WSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRITHLEGSYRSSKEGLVVQME 1143

Query: 532  FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                E+  RL          QL+ +  +  +     + +   +     Q   L  R + +
Sbjct: 1144 ARIAELEDRLENEERDRANLQLNNRRLERKVKELVMQVDDEHLSLT-DQKDQLSLRLKAM 1202

Query: 592  SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             RQ EE E++I ++ +    +K    +     V+ Q+ 
Sbjct: 1203 KRQVEEAEEEIDRLESS--KKKLQRELEEQIGVNEQLQ 1238


>gi|40849900|gb|AAR95662.1| plectin 8 [Rattus norvegicus]
          Length = 4545

 Score = 43.0 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 84/247 (34%), Gaps = 43/247 (17%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             L   Y + I + L+++ ++            ++ A         ++L + +  + K   
Sbjct: 1326 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAE-AHAQAKAQA 1384

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +   RE            + +   +E+        + Q+    +  +    +     EI 
Sbjct: 1385 ELEARE------------LQRRMQEEVTRREEAAVDAQQQKRSIQEELQHLRQSSEAEIQ 1432

Query: 539  QRLCERGFGELLK-QLDRQVRDAGLWS------------------ATTEANIVDVRQGYQ 579
             +  +    E  + +++ ++R   L                    A  E      RQ  +
Sbjct: 1433 AKAQQVEAAERSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQE 1492

Query: 580  QALALYKRFRLLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIH 629
            +A  L ++ +  S++K + E ++A   +  A+   EK    +  L E+         ++ 
Sbjct: 1493 EAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLR 1551

Query: 630  QIESQEA 636
            Q E++ A
Sbjct: 1552 QAEAERA 1558



 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2244 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2303

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2304 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2363

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2364 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2423

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2424 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2478

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2479 QEQILQETQALQKSFLSEKDSLLQRERFIE 2508



 Score = 40.6 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2204 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2263

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2264 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2323

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2324 KAEAELLQQQKELAQEQA 2341



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1655 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1714

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1715 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1773


>gi|40849904|gb|AAR95664.1| plectin 10 [Rattus norvegicus]
          Length = 4552

 Score = 43.0 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 23/237 (9%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1333 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1392

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    +  +   +        +  Q+   I+    ELQ L     ++   +   +    
Sbjct: 1393 LEARELQRRMQEEVTRREEAAVDAQQQKRSIQ---EELQHLRQSSEAEIQAKAQQVEAAE 1449

Query: 538  HQRLCERGFGELLK-QLDRQVR-------DAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              R+       +++ QL+   R       +     A  E      RQ  ++A  L ++ +
Sbjct: 1450 RSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQ 1509

Query: 590  LLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIHQIESQEA 636
              S++K + E ++A   +  A+   EK    +  L E+         ++ Q E++ A
Sbjct: 1510 DESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLRQAEAERA 1565



 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2251 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2310

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2311 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2370

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2371 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2430

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2431 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2485

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2486 QEQILQETQALQKSFLSEKDSLLQRERFIE 2515



 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2211 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2270

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2271 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2330

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2331 KAEAELLQQQKELAQEQA 2348



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1662 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1721

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1722 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1780


>gi|28209885|ref|NP_780829.1| replicative DNA helicase [Clostridium tetani E88]
 gi|28202320|gb|AAO34766.1| replicative DNA helicase [Clostridium tetani E88]
          Length = 444

 Score = 43.0 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 38/129 (29%), Gaps = 9/129 (6%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E ++L  +I     + +  + L    +     Q ++  +   + +        I + L 
Sbjct: 14  AEQSVLGAMIIDKTSIAQALEVLNKEDFYKEAHQTIYEAILDLYKKDVAVDMVTITENLQ 73

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +   EL+          G+   +     V      Q  + + K    L +      + I
Sbjct: 74  SKEKLELV---------GGVTYISEVGTSVISTANLQSYIDIVKDKSTLRKLIRASTEII 124

Query: 603 AQVTAKGEA 611
                K + 
Sbjct: 125 NDSYNKQDD 133


>gi|74186149|dbj|BAE34241.1| unnamed protein product [Mus musculus]
          Length = 1243

 Score = 43.0 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%)

Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
                  L +L    +      +   +   +  DL              L ++    +  
Sbjct: 238 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 297

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                      L  E         ++E E       +   +LEI          D     
Sbjct: 298 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 357

Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Y  + + ++  +L    +           +     +  +  +Q L      + +L ++ S
Sbjct: 358 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVWQQRERLQEELS 417

Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538
             E+ +        A L  +E  + L D   +  E +++L   +       +     + +
Sbjct: 418 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 477

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R  E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    
Sbjct: 478 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 537

Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
           ++   +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 538 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595



 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 79/268 (29%), Gaps = 19/268 (7%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
           P  +    R          +         K  +  ++  K++    Q  + ++Q+  Q  
Sbjct: 213 PSKEEEGLRAQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQE-QQAD 271

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
           +       R   K A    ++   +    +  ++     K    E A   +L      L+
Sbjct: 272 LQRRLKEARKEAKEALEAKERYMEEMADTADAIEMATLDKEMAEERA--ESLQQEVEALK 329

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           E+  EL        +L+ L + +     +      +            + L ++      
Sbjct: 330 ERVDEL------TTDLEILKAEIEEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSSS 383

Query: 560 AGLWSAT----TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
                       E    ++   +QQ   L +         +E+++Q+      G  E   
Sbjct: 384 EKQEHVKLQKLMEKKNQELEVVWQQRERLQEELSQAESTIDELKEQVDAA--LGAEEMVE 441

Query: 616 ILISILHEVHIQIHQIESQ----EAMIE 639
           +L      +  ++ ++       EAM E
Sbjct: 442 MLTDRNLNLEEKVRELRETVGDLEAMNE 469


>gi|323701464|ref|ZP_08113137.1| Peptidase M23 [Desulfotomaculum nigrificans DSM 574]
 gi|323533473|gb|EGB23339.1| Peptidase M23 [Desulfotomaculum nigrificans DSM 574]
          Length = 376

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 69/218 (31%), Gaps = 5/218 (2%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              +   L  +      E        + N +  ++K     +   S     ++   + R 
Sbjct: 15  LALLAGTLSPVIASPSLEQQLNHVRNQLNQKKSEEKQTKIEVRDYSRQLAAINSSINERN 74

Query: 485 AAL--LLTLIN--HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             +  L   +      +   + +  A  +  +   + L   +   +        E +   
Sbjct: 75  QQIKDLEGALEAATAKLNSTKRELAAAEKRLDESNRLLQKRVKGMYQSGPVSYLEVLLNA 134

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                F   L+ L R V           A    + +  +   A  ++   + R+ E  ++
Sbjct: 135 GSFSDFTNRLEFLRRMVESDAQMVDRISAEKAQIEKYKRSLDAKVQQIAAMKREHEAAKQ 194

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           ++AQ  ++ +A   +     L E    I ++E+QE  I
Sbjct: 195 KLAQAQSE-KAALLSEAQKNLKETAAAIDKLEAQEDAI 231


>gi|291387573|ref|XP_002710335.1| PREDICTED: transcription elongation regulator 1 isoform 2
           [Oryctolagus cuniculus]
          Length = 1071

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/348 (9%), Positives = 107/348 (30%), Gaps = 42/348 (12%)

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
              ++ L   +P ++              +   +   +     +         +D DS  
Sbjct: 554 MEDMKKLRHPTPTMLSIQKWQFSMNAIKEEQELMEEINEDEPVKAKKRKRDDNKDIDSEK 613

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
               +   +     ++  ++   K+  +          +  E  L   +   +       
Sbjct: 614 EAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPR------- 666

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y       L    +K + +     R  ++    +++   ++   +  + + K + + +  
Sbjct: 667 YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFS 721

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A              +++ +  +     + + L++   +   +++    +   +++  
Sbjct: 722 EFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKEDSKTRGEKIKS 770

Query: 544 RGFGELLKQ-LDRQVRDAGLWSATTEANI----------VDVRQGYQQALALYK---RFR 589
             F  L    LD Q R + +                    D+ + Y + +A      + +
Sbjct: 771 DFFELLSNHHLDSQSRWSKVKDKVEGDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEK 830

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 831 ELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 873


>gi|256221765|ref|NP_001157779.1| plectin isoform 1g [Rattus norvegicus]
          Length = 4551

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 23/237 (9%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1332 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1391

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    +  +   +        +  Q+   I+    ELQ L     ++   +   +    
Sbjct: 1392 LEARELQRRMQEEVTRREEAAVDAQQQKRSIQ---EELQHLRQSSEAEIQAKAQQVEAAE 1448

Query: 538  HQRLCERGFGELLK-QLDRQVR-------DAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              R+       +++ QL+   R       +     A  E      RQ  ++A  L ++ +
Sbjct: 1449 RSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQ 1508

Query: 590  LLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIHQIESQEA 636
              S++K + E ++A   +  A+   EK    +  L E+         ++ Q E++ A
Sbjct: 1509 DESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLRQAEAERA 1564



 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2250 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2309

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2310 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2369

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2370 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2429

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2430 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2484

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2485 QEQILQETQALQKSFLSEKDSLLQRERFIE 2514



 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2210 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2269

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2270 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2329

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2330 KAEAELLQQQKELAQEQA 2347



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1661 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1720

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1721 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1779


>gi|219518019|gb|AAI43841.1| TMF1 protein [Homo sapiens]
          Length = 1096

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 62/175 (35%), Gaps = 7/175 (4%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +   Q      KL+     +E  L    ++   + ++     A +     EL  L  
Sbjct: 616 GKEEVEKQHRENIKKLNSMVERQEKDLGRLQVDMDELEEKNRSIQAALDSAYKELTDLHK 675

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +  +        + + +  +   EL   L++   +A     T    + D+R   Q+
Sbjct: 676 A---NAAKDSEAQEAALSREMKAK--EELSAALEKAQEEARQQQETLAIQVGDLRLALQR 730

Query: 581 -ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              A  ++   L  +  E+++++ +   +   E +  + S    +  QI  +++ 
Sbjct: 731 TEQAAARKEDYLRHEIGELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 784


>gi|208780138|ref|ZP_03247481.1| ATPase family associated with various cellular activities (AAA)
           protein [Francisella novicida FTG]
 gi|208744142|gb|EDZ90443.1| ATPase family associated with various cellular activities (AAA)
           protein [Francisella novicida FTG]
          Length = 859

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    ++   +      +   +     + +  +   E LK+         L    
Sbjct: 390 AIDLVDEAASQIRMEI----DSKPEKMESLYRRIIQLKMQREQLKKEKDDATKKRLEILE 445

Query: 567 TEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISI 620
            E   +D     + + ++      +    L  + E+ + ++ +    G+  K A L    
Sbjct: 446 QEIKGLDSEYKGLEELWKAEKLKMQGTSKLKEELEKAKFELEKYQRVGDLSKMAELQYGK 505

Query: 621 LHEVHIQIHQIESQEA 636
           + E+  QI QIE  EA
Sbjct: 506 IPELEAQIKQIEETEA 521


>gi|134301181|ref|YP_001121149.1| AAA ATPase family protein [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134048958|gb|ABO46029.1| AAA superfamily ATPase clpB [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 859

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    ++   +      +   +     + +  +   E LK+         L    
Sbjct: 390 AIDLVDEAASQIRMEI----DSKPEKMESLYRRIIQLKMQREQLKKEKDDATKKRLEILE 445

Query: 567 TEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISI 620
            E   +D     + + ++      +    L  + E+ + ++ +    G+  K A L    
Sbjct: 446 QEIKGLDSEYKGLEELWKAEKLKMQGTSKLKEELEKAKFELEKYQRVGDLSKMAELQYGK 505

Query: 621 LHEVHIQIHQIESQEA 636
           + E+  QI QIE  EA
Sbjct: 506 IPELEAQIKQIEETEA 521


>gi|33468583|emb|CAE30366.1| novel protein similar to human non-muscle myosin, heavy polypeptide
            10 (MYH10) [Danio rerio]
          Length = 1065

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 90/275 (32%), Gaps = 28/275 (10%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               R + +   EK I+      +     E E        ++ ELE  L +  + +++++ 
Sbjct: 772  EMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLVAKKQELEEILHDLESRVEEEEE 831

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    Q  + ++Q   Q    +        +K    +       + M+  ++  +     
Sbjct: 832  RNQSLQNEKKKMQSHIQDLEEQLDEEEAARQKLQLEKVTAEAKIKKMEEDILLLEDQNSK 891

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             L+E  LL         + E   +LA+       L K+ +                    
Sbjct: 892  FLKEKKLLE------DRVGEMTSQLAEEEEKAKNLGKVKNK------------------- 926

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
              E    +L ++L ++ +              +      Q   L  +   L  Q  + E+
Sbjct: 927  -QEMMMVDLEERLKKEEKTRQELEKAKRKLDAETTDLQDQIAELQAQIDELKIQLAKKEE 985

Query: 601  QIAQVTAKGEAEKTAIL--ISILHEVHIQIHQIES 633
            ++  V A+G+ E       +  L E+  Q+ +++ 
Sbjct: 986  ELQAVLARGDEEVAQKNNALKQLRELQAQLAELQE 1020


>gi|71276720|ref|ZP_00652988.1| DnaB-like helicase, N-terminal:DnaB-like helicase, C-terminal
           [Xylella fastidiosa Dixon]
 gi|71899747|ref|ZP_00681898.1| DnaB-like helicase, N-terminal:DnaB-like helicase, C-terminal
           [Xylella fastidiosa Ann-1]
 gi|71162478|gb|EAO12212.1| DnaB-like helicase, N-terminal:DnaB-like helicase, C-terminal
           [Xylella fastidiosa Dixon]
 gi|71730442|gb|EAO32522.1| DnaB-like helicase, N-terminal:DnaB-like helicase, C-terminal
           [Xylella fastidiosa Ann-1]
          Length = 486

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 10/147 (6%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L  L+  P +L +    +    +   + Q ++  +     +++      +     
Sbjct: 25  AEQAVLGGLMLAPEMLVKIADWITSENFYRRDHQLIYRAILELDSKRQPCDVVTLMDWFH 84

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +G      ++D       L S T  A        Y + +    R     R+  ++  ++
Sbjct: 85  SQGLS---AEVDGGAYLIELASTTPSAA---NIVAYAEIVVDKARL----RELIDVGTRL 134

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIH 629
                K E  +T  LI+       ++ 
Sbjct: 135 QDAGFKPEGRETRDLIAEAEHAIARLA 161


>gi|326429686|gb|EGD75256.1| hypothetical protein PTSG_06911 [Salpingoeca sp. ATCC 50818]
          Length = 2361

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/287 (10%), Positives = 88/287 (30%), Gaps = 24/287 (8%)

Query: 365  CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL--RY 422
            C  + A E+ + E+    +       +    +    R +           ++++    R+
Sbjct: 1329 CELEEATEQRLQEARAAAEHDASETRKQAKEDAERTRQQARDRAAEDEKAMREEMEARRH 1388

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
               + +R   Q+L        +      ++      ++   QR    + ++  L++    
Sbjct: 1389 AMEEDLRKLQQRLEDDRQAALADMEEALQQERAKHQKRLAEQRERDEAAMREDLARLRQR 1448

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----H 538
             E  +               +  +      +E  ++   +  +    +      +     
Sbjct: 1449 TEDEIAQL------------ESSSKRALAQSEAGRVAVSVHEETRAARRDRDAAVRAKQV 1496

Query: 539  QRLCERGFGELLKQL----DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                     ++++ L    DR            E     V+Q    A    +R+R L   
Sbjct: 1497 ADARVAELEDVVEDLKQDHDRLAGALRRTEQQLEEEQGAVQQAQLAAEQAERRYRQLEEA 1556

Query: 595  KEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIESQEAMIE 639
             E ++  +++   +   +AE+     + +  + I++ Q     ++ E
Sbjct: 1557 YERLQLSLSEQEQQARIDAERYRQDSAEVERLEIELQQARRNASLYE 1603



 Score = 37.6 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 78/289 (26%), Gaps = 21/289 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                R   +    KL                E         +  L    +     +++  
Sbjct: 1383 MEARRHAMEEDLRKLQQRLEDDRQAALADMEEALQQERAKHQKRLAEQRERDEAAMREDL 1442

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q   D + QL        +         + H + +   +    +   K     +
Sbjct: 1443 AR--LRQRTEDEIAQLESSSKRALAQSEAGRVAVSVHEETRAARRDRDAAVRAKQVADAR 1500

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             +  E  +          L++ +  LA         Q+L     +    Q      E   
Sbjct: 1501 VAELEDVV--------EDLKQDHDRLAGALRRTE--QQLEEEQGAVQQAQLAAEQAERRY 1550

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            R  E  +  L   L  Q + A + +     +  +V +   +     +   L     +++E
Sbjct: 1551 RQLEEAYERLQLSLSEQEQQARIDAERYRQDSAEVERLEIELQQARRNASLYEEAAKDLE 1610

Query: 600  KQIAQVTA---------KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             Q+ +  A           + E  A L + L  +      ++ +   +E
Sbjct: 1611 LQLQEARALLQSDQTRLTADQEVEAQLQAELANLTRTNTALKQKAIGLE 1659


>gi|301799297|emb|CBW31823.1| pneumococcal surface protein PspA [Streptococcus pneumoniae OXC141]
          Length = 848

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 46/127 (36%), Gaps = 2/127 (1%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           +   L   L    VE K    E++   +          Q         L     +     
Sbjct: 188 DYATLKVALAKKEVEAKELEIEKLQDEISTLEQEVATAQHQVDNLKKLLAGVDPDDTEAI 247

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE-AEKTAILISILHEVHIQIHQIE 632
             +  +    L  +   L++++ E+EK +  +  +G+  ++     +   E++ ++  ++
Sbjct: 248 EAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAAEA-ELNKKVESLQ 306

Query: 633 SQEAMIE 639
           ++ A +E
Sbjct: 307 NKVADLE 313



 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 13/135 (9%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L +        +  L++++ +  +      A+ 
Sbjct: 271 ELEKLLDSLDPEGKTQDELDKEAAEAELNKKVESLQNKVADLEKEISNLEI--LLGGADS 328

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG------EAEKTAILISILHE-V 624
            D     Q  LA   +   L++++ E+EK +  +  +G      + E     +    E +
Sbjct: 329 EDDTAALQNKLA--TKKAELAKKQTELEKLLDSLDPEGKTQDELDKEAAEAELDKKVESL 386

Query: 625 HIQIHQIESQEAMIE 639
             ++  +E + + +E
Sbjct: 387 QNKVADLEKEISNLE 401



 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L +        +  L++++ +  +      A+ 
Sbjct: 352 ELEKLLDSLDPEGKTQDELDKEAAEAELDKKVESLQNKVADLEKEISNLEI--LLGGADS 409

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            D     Q  LA   +   L + ++E++  + ++   G+ E+T
Sbjct: 410 EDDTAALQNKLA--TKKAELEKTQKELDAALNELGPDGDEEET 450


>gi|298293362|ref|YP_003695301.1| hypothetical protein Snov_3408 [Starkeya novella DSM 506]
 gi|296929873|gb|ADH90682.1| conserved hypothetical protein [Starkeya novella DSM 506]
          Length = 944

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 40/140 (28%), Gaps = 9/140 (6%)

Query: 505 LADIRYDNNELQKLWSF--LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
           L +  + N   + L     + +    Q+  +   +   L                  +  
Sbjct: 493 LPERSFSNPLARALIDERRVLAFDANQRERVEAGL-DALAIAPEKFTPDPSHYMGLRSAY 551

Query: 563 WSATTEANIVDVRQGYQQALALYKR-----FRLLSRQKEEIEKQIA-QVTAKGEAEKTAI 616
           W      +  D+R        +  R        + ++  + ++ +   +      ++   
Sbjct: 552 WRLANAKSDEDLRGVVAYLWEIAVRIEDGDLSDVEKKLRDAQQALQNALENNASDDEIKR 611

Query: 617 LISILHEVHIQIHQIESQEA 636
           L   L E   +  Q  ++EA
Sbjct: 612 LTQELREAMQEFMQALAEEA 631


>gi|296225636|ref|XP_002758585.1| PREDICTED: TATA element modulatory factor [Callithrix jacchus]
          Length = 1096

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 62/175 (35%), Gaps = 7/175 (4%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +   Q      KL+     +E  L    ++   + ++     A +     EL  L  
Sbjct: 616 GKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKNRSIQAALDSAYKELTDLHK 675

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +  +        + + +  +   EL   L++   +A     T    + D+R   Q+
Sbjct: 676 A---NAAKDSEAQEAALSREMKAK--EELSAALEKAQEEARQQQETLAIQVGDLRLALQR 730

Query: 581 -ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              A  ++   L  +  E+++++ +   +   E +  + S    +  QI  +++ 
Sbjct: 731 SEQAAARKEDYLRHEIGELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 784


>gi|258405221|ref|YP_003197963.1| replicative DNA helicase [Desulfohalobium retbaense DSM 5692]
 gi|257797448|gb|ACV68385.1| replicative DNA helicase [Desulfohalobium retbaense DSM 5692]
          Length = 481

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/182 (8%), Positives = 52/182 (28%), Gaps = 16/182 (8%)

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
             S  +  +L  +    E A+L  +    A+       L +  + +   + ++      +
Sbjct: 29  KVSKDLVRRLPPQNLEAEQAVLGGVFLRNAVFHSLIDLLVEDDFYSPAHRIIYRTFQDLY 88

Query: 527 VEQKYFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            +        + + L +               L + +              E  +     
Sbjct: 89  RQNTPIDLLTVSEHLRKTEELDAVGGPVYLTSLTESVASAANAEHYAQIVKEKAVRRALI 148

Query: 577 GY--QQALALYKRFRLLSRQKEEIEKQ---IAQVTAKGEAEKTAILISI-LHEVHIQIHQ 630
                     ++    L    +  +++   +A+  ++   + T  L+     ++  ++ +
Sbjct: 149 QVGSDMITRSFESGAELEGLLDNAQQEVFAVAEAKSRSIFQPTRELVKDVFEQLEKRVER 208

Query: 631 IE 632
            E
Sbjct: 209 QE 210


>gi|149066131|gb|EDM16004.1| rCG59523, isoform CRA_b [Rattus norvegicus]
          Length = 4573

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 84/247 (34%), Gaps = 43/247 (17%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             L   Y + I + L+++ ++            ++ A         ++L + +  + K   
Sbjct: 1354 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAE-AHAQAKAQA 1412

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +   RE            + +   +E+        + Q+    +  +    +     EI 
Sbjct: 1413 ELEARE------------LQRRMQEEVTRREEAAVDAQQQKRSIQEELQHLRQSSEAEIQ 1460

Query: 539  QRLCERGFGELLK-QLDRQVRDAGLWS------------------ATTEANIVDVRQGYQ 579
             +  +    E  + +++ ++R   L                    A  E      RQ  +
Sbjct: 1461 AKAQQVEAAERSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQE 1520

Query: 580  QALALYKRFRLLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIH 629
            +A  L ++ +  S++K + E ++A   +  A+   EK    +  L E+         ++ 
Sbjct: 1521 EAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLR 1579

Query: 630  QIESQEA 636
            Q E++ A
Sbjct: 1580 QAEAERA 1586



 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2272 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2331

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2332 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2391

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2392 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2451

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2452 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2506

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2507 QEQILQETQALQKSFLSEKDSLLQRERFIE 2536



 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2232 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2291

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2292 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2351

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2352 KAEAELLQQQKELAQEQA 2369



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1683 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1742

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1743 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1801


>gi|126336125|ref|XP_001363891.1| PREDICTED: similar to TATA element modulatory factor 1 [Monodelphis
           domestica]
          Length = 1105

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 65/175 (37%), Gaps = 7/175 (4%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +          KL+     +E  L    I+   + ++     A +   ++  ++L  
Sbjct: 619 GKEEIEKSHRENIKKLNSVVERQEKDLGRLQIDMDDLGEKNRSAQAAL---DSAYKELAD 675

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
              ++ ++        + + +  +   EL   L++   +A          + D+R   Q+
Sbjct: 676 LHKANAMKDTEVQEASLSREMKVK--EELCLALEKAQEEAHQQQEALAIQVGDLRLALQR 733

Query: 581 AL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           A  A  ++   L  +  E+++++ +   +   E +  + S    +  QI  +++ 
Sbjct: 734 AEQAAARKEDYLRHEISELQQRLQEAENR-NQELSQSVTSTTRPLLRQIENLQAT 787


>gi|119582246|gb|EAW61842.1| transcription elongation regulator 1, isoform CRA_c [Homo sapiens]
          Length = 1032

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 631 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 690

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 691 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 738

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 739 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 787

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 788 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 847

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 848 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 900


>gi|118498299|ref|YP_899349.1| chaperone clpB [Francisella tularensis subsp. novicida U112]
 gi|194323883|ref|ZP_03057658.1| ATPase, AAA family protein [Francisella tularensis subsp. novicida
           FTE]
 gi|118424205|gb|ABK90595.1| chaperone clpB [Francisella novicida U112]
 gi|194321780|gb|EDX19263.1| ATPase, AAA family protein [Francisella tularensis subsp. novicida
           FTE]
          Length = 859

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    ++   +      +   +     + +  +   E LK+         L    
Sbjct: 390 AIDLVDEAASQIRMEI----DSKPEKMESLYRRIIQLKMQREQLKKEKDDATKKRLEILE 445

Query: 567 TEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISI 620
            E   +D     + + ++      +    L  + E+ + ++ +    G+  K A L    
Sbjct: 446 QEIKGLDSEYKGLEELWKAEKLKMQGTSKLKEELEKAKFELEKYQRVGDLSKMAELQYGK 505

Query: 621 LHEVHIQIHQIESQEA 636
           + E+  QI QIE  EA
Sbjct: 506 IPELEAQIKQIEETEA 521


>gi|282158051|ref|NP_001164071.1| myosin-11 [Rattus norvegicus]
          Length = 1972

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 91/286 (31%), Gaps = 23/286 (8%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               + + + A EK +++     +     E E        ++ ELE  L      +++++ 
Sbjct: 877  ELEQRHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 936

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    QA R ++ Q       +        +K    +       + ++  ++        
Sbjct: 937  RSQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 996

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKY 531
              +E  LL         + +    LA+       L KL      + S+        E+  
Sbjct: 997  LSKERKLLE------ERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSR 1050

Query: 532  FLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----ALY 585
               E++ ++L      F E +  L  Q+ +  +  A  E  +        + +       
Sbjct: 1051 QELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEITQKNNAL 1110

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIH 629
            K+ R L     ++++ +    A     +     L   L  +  ++ 
Sbjct: 1111 KKIRELEGHVSDLQEDLDSERAARNKAEKQKRDLGEELEALKTELE 1156


>gi|62087798|dbj|BAD92346.1| TATA element modulatory factor 1 variant [Homo sapiens]
          Length = 1096

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 62/175 (35%), Gaps = 7/175 (4%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +   Q      KL+     +E  L    ++   + ++     A +     EL  L  
Sbjct: 616 GKEEVEKQHRENIKKLNSMVERQEKDLGRLQVDMDELEEKNRSIQAALDSAYKELTDLHK 675

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +  +        + + +  +   EL   L++   +A     T    + D+R   Q+
Sbjct: 676 A---NAAKDSEAQEAALSREMKAK--EELSAALEKAQEEARQQQETLAIQVGDLRLALQR 730

Query: 581 -ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              A  ++   L  +  E+++++ +   +   E +  + S    +  QI  +++ 
Sbjct: 731 TEQAAARKEDYLRHEIGELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 784


>gi|38636442|emb|CAE81978.1| related to vesicular transport protein [Neurospora crassa]
          Length = 1150

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 54/132 (40%), Gaps = 15/132 (11%)

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           + L ++   ++  L EE+  RL E      + +++L +Q +         E     +++ 
Sbjct: 565 AELTAELQAEQARLKEEL-ARLQEELADKDQRIERLAKQRKTEEDLREEIENLQDSLKEI 623

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT------------AILISILHEVH 625
             + +   +R + L ++K+E++ +I ++  + EA  +              L     ++ 
Sbjct: 624 GFEHVETKQRLKELEQEKKELKARIDELEKEVEAAASTAQTNIKLQSEHESLRQEFDDLK 683

Query: 626 IQIHQIESQEAM 637
            +   ++S  A 
Sbjct: 684 QKSQTLQSDLAA 695



 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 72/213 (33%), Gaps = 12/213 (5%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           + L+Q F     +            +    +      ++  L K +   K   +EAA L 
Sbjct: 673 ESLRQEFDDLKQKSQTLQSDLAAAQQLAQSRYKDLTDLREVLQKAQPELKSLRQEAAALK 732

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFG 547
           T+    A      + L          + L + L         +    + +H ++ +    
Sbjct: 733 TVREELAARNADLRNLEKRE------KDLKADLVCAQRLAADRDGEIKALHDKVGQETNA 786

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQG--YQQALALYKRFRLLSRQKEEIEKQIAQV 605
            L  + +++V    L  +  E   +  R+    ++   + +    L  +  E+E+++ ++
Sbjct: 787 RLKLEDEKRVLGRDLRRSEAEKIEIAAREEKTARELQRVQEEANKLRPRIRELEEEVNRL 846

Query: 606 TAKGE--AEKTAILISILHEVHIQIHQIESQEA 636
             +G+   E+  +  S        +  +  Q A
Sbjct: 847 RKEGDMMREEVQLKSSQYTSAQNLLGSMRDQTA 879


>gi|126649319|ref|XP_001388331.1| kinesin heavy chain [Cryptosporidium parvum Iowa II]
 gi|32398858|emb|CAD98568.1| kinesin heavy chain, possible [Cryptosporidium parvum]
 gi|126117425|gb|EAZ51525.1| kinesin heavy chain, putative [Cryptosporidium parvum Iowa II]
          Length = 757

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 66/219 (30%), Gaps = 16/219 (7%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R  Y Q + + +++L  +         +            G  + L +  +       
Sbjct: 388 AERNNYIQTLEELVKKLGGELPENKPSGDKGGSIILNSSLNIGERKELQEGIIPGS---- 443

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E   L         L E  +    ++ ++ ++ +L   +       K    E+ +
Sbjct: 444 -----EKTTLNMRTLDNDELDELEEAKQQLKENSEKITQLKQEISEKENNLKLMSEEKEN 498

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             +      +L+++L +        + T E   +  +    +          L  + EE 
Sbjct: 499 LNIK---LSDLIQELSQTKYQQQDQAETVEHLQLKNKSLIGELEQSQIHIHDLEARIEEY 555

Query: 599 EKQIAQVTAKGEAEKTAILIS----ILHEVHIQIHQIES 633
           + + +Q   + +  ++          + ++   +  I S
Sbjct: 556 KSEESQRRNEEKENESNKAFQSLSSEIQQLREYLLAIRS 594


>gi|15966529|ref|NP_386882.1| hypothetical protein SMc03992 [Sinorhizobium meliloti 1021]
 gi|15075800|emb|CAC47355.1| Hypothetical protein signal peptide [Sinorhizobium meliloti 1021]
          Length = 344

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 13/138 (9%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
             L + L +       F+  +        G  E+L +L+ Q+ +     A  ++   D+ 
Sbjct: 22  DALSTLLMAIMFLLSVFVTAQFLLGREISGKDEVLNRLNSQINELTQLLALEKSGKQDLE 81

Query: 576 QGYQQALALYKRFRLLSRQKEEIE-----------KQIAQVTAKGEAEK--TAILISILH 622
                  A   +      + + +            ++I ++ ++ E E+  +A  +S + 
Sbjct: 82  DSLANLQASLSQSEGERSRLQALLDRGAGSAEVADEKIGRLGSELENERQVSARAMSQIE 141

Query: 623 EVHIQIHQIESQEAMIEG 640
            ++ QI  + SQ A IEG
Sbjct: 142 LLNQQIAALRSQIAAIEG 159


>gi|27807301|ref|NP_777147.1| centrosomal protein of 290 kDa [Bos taurus]
 gi|6007639|gb|AAF00990.1|AF176816_1 KIAA0373 homolog [Bos taurus]
          Length = 1453

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/316 (11%), Positives = 97/316 (30%), Gaps = 22/316 (6%)

Query: 346  NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
                    + G D D   +        + +  S   +++ ++ E  N+       +    
Sbjct: 1117 KDAYSRPSTSGIDSDDHYQREQ-ELQRENLKLSSENIELKFQLEQANKDLPRLKNQVRDL 1175

Query: 406  IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQ 464
              +   +   K +  R         R  +   +         +  +K  R  +Q K  S 
Sbjct: 1176 KEMCEFLKKEKAEVERKLGRVRGSGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASG 1235

Query: 465  RLMQSSLVKGKLSKKPSLREAALLL------TLINHPAILQEQYQELADIRYDNNELQKL 518
             L    +   ++  +    E   L         +++ +  +   + +A+      EL+K+
Sbjct: 1236 ILTSEKMANIEMENEKLKAELEKLKVHLGRQLSMHYESKAKGTEKIVAENERLRKELKKI 1295

Query: 519  WSFLFSDFVEQKYFLPEEIHQRLC---------ERGFGELLKQLD--RQVRDAGLWSATT 567
               +     E      + + + L          E+   EL+ +++  +         +  
Sbjct: 1296 --EILKHVPEGDE-TEQGLQRELRVLRLANSQLEKEKEELIHRIEISKDQNGPDSTISDP 1352

Query: 568  EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            +  +  ++    Q        + L  + ++++K++         E   +  +   EV   
Sbjct: 1353 DHLMEKIKDLETQLRTSDMEKQHLKEEIQKLKKELENFDPSFFEEIEDLKYNYKEEVKKN 1412

Query: 628  IHQIESQEAMIEGFGK 643
            I   E  + + E FG 
Sbjct: 1413 ILLEEKLKKLSEQFGV 1428


>gi|27807325|ref|NP_777259.1| myosin-10 [Bos taurus]
 gi|13431706|sp|Q27991|MYH10_BOVIN RecName: Full=Myosin-10; AltName: Full=Cellular myosin heavy chain,
            type B; AltName: Full=Myosin heavy chain 10; AltName:
            Full=Myosin heavy chain, non-muscle IIb; AltName:
            Full=Non-muscle myosin heavy chain B; Short=NMMHC-B;
            AltName: Full=Non-muscle myosin heavy chain IIb;
            Short=NMMHC II-b; Short=NMMHC-IIB
 gi|4115748|dbj|BAA36494.1| nonmuscle myosin heavy chain B [Bos taurus]
 gi|296476696|gb|DAA18811.1| myosin-10 [Bos taurus]
          Length = 1976

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 876  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 935

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 936  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 995

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 996  KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1049

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +        
Sbjct: 1050 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKIQVAKKE---EELQGALARGDDETLHK 1106

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1107 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1154


>gi|146296631|ref|YP_001180402.1| chromosome segregation protein SMC [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410207|gb|ABP67211.1| condensin subunit Smc [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 1177

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 85/236 (36%), Gaps = 23/236 (9%)

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
            + ++ +  +      + +   +L              +  N          + L+    
Sbjct: 668 FSLLERKVEKDELENQVLNLASELDSLEKQILEKNQEVYSLNQEKESVDSKIKDLIAKID 727

Query: 472 VKGKLSKKPSLREAALLL---TLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFV 527
              K  +    ++  L+    +L N   ++ +Q   L +DI      +Q     +  D  
Sbjct: 728 DIEKEVEMCEYKKEQLIQKRGSLENEKKVINDQTTNLQSDIEITRKNIQ-----ILEDSK 782

Query: 528 EQKYFLPEEIHQRLC---------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
            +   +  ++  RL          +  +  LL++ ++   +  +     E+    ++   
Sbjct: 783 AEIERVTSDLKSRLRKLKEDHNLFDNEYRRLLEEKNQIEAEISILKHKLESAEQTLKNLE 842

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            Q     ++     ++ +E+E+QI++V+   EA+K     + L ++  +I ++E +
Sbjct: 843 DQKAKKQEQKLKCDQEIKELERQISEVSHVVEAQK-----NHLDKLKDEIEKMEKE 893


>gi|317037705|ref|XP_001398958.2| chromosome segregation ATPase family protein [Aspergillus niger CBS
            513.88]
          Length = 2279

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/294 (11%), Positives = 85/294 (28%), Gaps = 24/294 (8%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL---EIHLKNCINHIKD 417
              +        ++    +  + + + +R  E       +        E   ++ +N IKD
Sbjct: 819  DDLMEAIAAGLQEANEANQSVGEQMLERVQEQLDGIKGEMGQHFSASEETSEHLLNAIKD 878

Query: 418  QK-----LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
                       Y+    +       + +       R  + +      +  +    + +  
Sbjct: 879  GIAVVRQEVEGYASTAAE--ASGKHEIMDTVKEGFRLLQADMEKTITETAASNAPRGNPD 936

Query: 473  KGKLSKKPSLREAALLL-----TLINH--PAILQEQYQELADIRYDNNELQK--LWSFLF 523
              +L      +E   L       LI +  P    E    + DI       +   + + + 
Sbjct: 937  TPELLDAME-KEFEHLRQTMSSLLIRNNAPNEKDEILDAIRDISEQQKTSKSDDVLAAIR 995

Query: 524  SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                +Q     E+I   L E+         D  +           +   D      + ++
Sbjct: 996  ELSEKQAGTPGEDILAALREQLDEHKTASSDAIIAAVEAAFEQKPSAPSDEILSALREIS 1055

Query: 584  LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
              +         EEI   I +++ K     +  +I+ + E+  + +   S+E +
Sbjct: 1056 EKQDNTN----SEEILAAIREISEKQNNSNSEEIIAAIREISEKQNDTNSEEIL 1105


>gi|149374975|ref|ZP_01892748.1| chromosome segregation SMC protein [Marinobacter algicola DG893]
 gi|149360864|gb|EDM49315.1| chromosome segregation SMC protein [Marinobacter algicola DG893]
          Length = 1164

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 26/281 (9%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
           K   E +       + +  + S N  +++ +L    +     +   +      + + +R 
Sbjct: 718 KARAEQIDARLQRIRDDLADVSMNLEEQQGQLLETREEWQQALASTEDSDEEKERLLERR 777

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
             L +    +         ++  H+ Q        Q   ++  + +    +E        
Sbjct: 778 DVLRENL--DRLRQEARHDRDHAHQLQLQLQSLNSQRDGLRQTIDRMQLQKERL------ 829

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                L    +   +      +LQ     L    + ++  L              + L++
Sbjct: 830 --DERLDILRESRENAEEPIEDLQMQLEGLLDRRLAEEEKLGAA----------RDALEE 877

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQ----QALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           +D++VRD     +  E  I DVR   +    ++ AL  R      Q EE++ ++ +V + 
Sbjct: 878 IDQEVRDREQSRSRIEHTIQDVRTSLEKLKMESQALEIRASNHLEQLEELDVRLQEVLST 937

Query: 609 GEAEKTAILISI-LHEVHIQIHQIES-QEAMIEGFGKMSGR 647
              + +    +  L ++  +I ++ +   A IE +   S R
Sbjct: 938 LPEDASEKTWAEDLEKIGSRIQRLGAINLAAIEEYQVQSER 978


>gi|149066130|gb|EDM16003.1| rCG59523, isoform CRA_a [Rattus norvegicus]
          Length = 4585

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 84/247 (34%), Gaps = 43/247 (17%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             L   Y + I + L+++ ++            ++ A         ++L + +  + K   
Sbjct: 1366 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAE-AHAQAKAQA 1424

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +   RE            + +   +E+        + Q+    +  +    +     EI 
Sbjct: 1425 ELEARE------------LQRRMQEEVTRREEAAVDAQQQKRSIQEELQHLRQSSEAEIQ 1472

Query: 539  QRLCERGFGELLK-QLDRQVRDAGLWS------------------ATTEANIVDVRQGYQ 579
             +  +    E  + +++ ++R   L                    A  E      RQ  +
Sbjct: 1473 AKAQQVEAAERSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQE 1532

Query: 580  QALALYKRFRLLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIH 629
            +A  L ++ +  S++K + E ++A   +  A+   EK    +  L E+         ++ 
Sbjct: 1533 EAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLR 1591

Query: 630  QIESQEA 636
            Q E++ A
Sbjct: 1592 QAEAERA 1598



 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2284 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2343

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2344 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2403

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2404 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2463

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2464 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2518

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2519 QEQILQETQALQKSFLSEKDSLLQRERFIE 2548



 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2244 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2303

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2304 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2363

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2364 KAEAELLQQQKELAQEQA 2381



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1695 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1754

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1755 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1813


>gi|114306786|dbj|BAF31272.1| HCR protein [Homo sapiens]
          Length = 756

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 541 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 600

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 601 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 660


>gi|88769949|gb|ABD51465.1| S1L [Squirrel poxvirus]
          Length = 1258

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 82/242 (33%), Gaps = 32/242 (13%)

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
            +L    ++          R  Y     ++L +  +K   E     R   +  +  ++K 
Sbjct: 759 DQLSEQTRDLEEKAAAADERKRYL----EKLNEALEKKAVECEDRTRELSQKTQGLEEKA 814

Query: 462 PSQRLMQSSLVKGKLSKKPSLR--EAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
            +       L K   + +   R  E                  ++++++   N++L+   
Sbjct: 815 AAAETRAEDLAKKLSASEEKARDLERG-----------ASRSAEKISNLETQNSDLK--- 860

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
                   +      +        +   +  + L+++  D    +   E    D++Q  Q
Sbjct: 861 -------EKANNLETQAAALEKKTQDLEQKNQDLEKKADDLEQKTQELEKKAEDLKQKNQ 913

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAM 637
               L K+   L ++ +E+EK+   +    +   +KT  L     E+     ++E + A+
Sbjct: 914 D---LEKKADDLEQKTQELEKKAEALETDNQAAQQKTEALEERNRELEKTAKELEDKGAL 970

Query: 638 IE 639
           ++
Sbjct: 971 LQ 972


>gi|86197975|dbj|BAE78628.1| chromosome 6 open reading frame 18 [Homo sapiens]
          Length = 756

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 541 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 600

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 601 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 660


>gi|74146265|dbj|BAE28908.1| unnamed protein product [Mus musculus]
          Length = 677

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    E+I  +L       +L +    +R A +     E + + V    + +   ++R  
Sbjct: 512 QSMPSEQIRNQLT--AMSSVLAKALEVIRPAHILQEKEEQHQLAVNAYLKNSRKEHQRIL 569

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +  EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 570 ARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|383110|prf||1902227A lamin A
          Length = 665

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 103/319 (32%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++ + +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEEYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|330941735|gb|EGH44489.1| chromosome segregation ATPase [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 646

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 78/255 (30%), Gaps = 19/255 (7%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY---SQAIRDRLQQLFQKYITEHSG 445
                   +PD     +         I D      Y    +++  R       ++ +   
Sbjct: 198 LFSVLHGVSPDYAIVAQKAAAPEQLEIFDAVFGKEYGMSLESLSRRYDSQVAGWVEKSDA 257

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
                ++      Q+G     +  +L +   + +  LRE   L  +      L++  + L
Sbjct: 258 TCAELREQLNQVQQRGQELEQIVRALEESGTATETELREQ--LNQVQQRGQELEQIARAL 315

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +         ++   L       +    E+I + L E G      +L  Q+        
Sbjct: 316 EESGAATET--EMRQQLNQVQQRGQEL--EQIARTLEESG-AATHAELRDQLSHVQEQGK 370

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEE-------IEKQIAQVTAKGEAEKTAILI 618
             E+++  ++      +    R   L  +  E       + ++ AQ+       +     
Sbjct: 371 HLESSVHALQN--NDEVEARIREVTLRAELAESRVHGFQLGQEAAQLRMNESEARLNEAF 428

Query: 619 SILHEVHIQIHQIES 633
           S L E+  Q+ Q++ 
Sbjct: 429 SYLKELQAQVTQLQQ 443


>gi|256221612|ref|NP_001157768.1| plectin isoform 1c [Rattus norvegicus]
          Length = 4573

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 84/247 (34%), Gaps = 43/247 (17%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             L   Y + I + L+++ ++            ++ A         ++L + +  + K   
Sbjct: 1354 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAE-AHAQAKAQA 1412

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +   RE            + +   +E+        + Q+    +  +    +     EI 
Sbjct: 1413 ELEARE------------LQRRMQEEVTRREEAAVDAQQQKRSIQEELQHLRQSSEAEIQ 1460

Query: 539  QRLCERGFGELLK-QLDRQVRDAGLWS------------------ATTEANIVDVRQGYQ 579
             +  +    E  + +++ ++R   L                    A  E      RQ  +
Sbjct: 1461 AKAQQVEAAERSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQE 1520

Query: 580  QALALYKRFRLLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIH 629
            +A  L ++ +  S++K + E ++A   +  A+   EK    +  L E+         ++ 
Sbjct: 1521 EAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLR 1579

Query: 630  QIESQEA 636
            Q E++ A
Sbjct: 1580 QAEAERA 1586



 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2272 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2331

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2332 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2391

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2392 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2451

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2452 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2506

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2507 QEQILQETQALQKSFLSEKDSLLQRERFIE 2536



 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2232 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2291

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2292 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2351

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2352 KAEAELLQQQKELAQEQA 2369



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1683 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1742

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1743 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1801


>gi|114602554|ref|XP_001158130.1| PREDICTED: transcription elongation regulator 1 isoform 4 [Pan
           troglodytes]
          Length = 1100

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/355 (8%), Positives = 106/355 (29%), Gaps = 45/355 (12%)

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            L     ++ +  + +    +    + +    +   +        +   +          
Sbjct: 579 MLSIQKWQFSMSAIKEEQELMEEINEDEPVKAKKRKRMSKKSFMWIARASLFRR---DDN 635

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +D DS      +   +     ++  ++   K+  +          +  E  L   +   +
Sbjct: 636 KDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPR 695

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
                  Y       L    +K + +     R  ++    +++   ++   +  + + K 
Sbjct: 696 -------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKF 743

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           + + +  E A              +++ +  +     + + L++   +   +++    + 
Sbjct: 744 NPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKEDSKT 792

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQALALY 585
             +++    F  L                  E++             D+ + Y + +A  
Sbjct: 793 RGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKN 852

Query: 586 K---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
               + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 853 LDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 902


>gi|73955673|ref|XP_860854.1| PREDICTED: similar to myosin, heavy polypeptide 10, non-muscle
            isoform 8 [Canis familiaris]
          Length = 1997

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 897  EEMERKHQQLLEEKNILTEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 956

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 957  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1016

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1017 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1070

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +        
Sbjct: 1071 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKVQLAKKE---EELQGALARGDDETLHK 1127

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1128 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1175



 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 83/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + R +L   ++     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1412 EEARKKLLKDVEALGQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQIASNLEKKQ 1471

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1472 KKFDQLLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALETKEEFERQ 1526

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1527 NKQLRADMEDLISSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1586

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1587 EVNMQAMKAQFERDLQTRDEQNEEKKRLLVKQVRELEAELEDERKQRALAVASKKKLEID 1646

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1647 LKDLEAQIEA 1656


>gi|19745465|ref|NP_606601.1| DNA polymerase III delta prime subunit [Streptococcus pyogenes
           MGAS8232]
 gi|21910226|ref|NP_664494.1| putative DNA polymerase III delta prime subunit - phage associated
           [Streptococcus pyogenes MGAS315]
 gi|28876155|ref|NP_795382.1| putative DNA polymerase III delta prime subunit [Streptococcus
           pyogenes phage 315.1]
 gi|19747580|gb|AAL97100.1| putative DNA polymerase III delta prime subunit [Streptococcus
           pyogenes MGAS8232]
 gi|21904420|gb|AAM79297.1| putative DNA polymerase III delta prime subunit - phage-associated
           [Streptococcus pyogenes phage 315.1]
          Length = 446

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 54/178 (30%), Gaps = 12/178 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K+     + E A+L ++  +P  + E  + L    +     + L+  + S     +    
Sbjct: 5   KMLPHDPVSEQAVLGSIFINPEKIIEVAEYLKPDDFYKPAHRILFKAMLSISGNAEPIDV 64

Query: 535 EEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVD-VRQGYQQAL- 582
             +   L  +             E++  +              +   +  +      ++ 
Sbjct: 65  VTVKSVLESQDNLATIGGITYLLEVVNAVPTSAHAEHYAKIVAKKAQLRSIIDNLSDSIG 124

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             Y     +     + E+ + +V+          +  +L E + +I +  +    I G
Sbjct: 125 NAYDENMDIDEIIAKTERSLIEVSQSSNKSSFRPIHDVLAENYQKIEERSNNNTQITG 182


>gi|89255534|ref|YP_512895.1| ClpB protein [Francisella tularensis subsp. holarctica LVS]
 gi|115314050|ref|YP_762773.1| endopeptidase Clp [Francisella tularensis subsp. holarctica OSU18]
 gi|156501472|ref|YP_001427537.1| AAA family ATPase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010310|ref|ZP_02275241.1| ATPase [Francisella tularensis subsp. holarctica FSC200]
 gi|254366960|ref|ZP_04982997.1| clpB protein [Francisella tularensis subsp. holarctica 257]
 gi|290954297|ref|ZP_06558918.1| AAA family ATPase [Francisella tularensis subsp. holarctica URFT1]
 gi|295312276|ref|ZP_06803070.1| AAA family ATPase [Francisella tularensis subsp. holarctica URFT1]
 gi|89143365|emb|CAJ78535.1| ClpB protein [Francisella tularensis subsp. holarctica LVS]
 gi|115128949|gb|ABI82136.1| endopeptidase Clp [Francisella tularensis subsp. holarctica OSU18]
 gi|134252787|gb|EBA51881.1| clpB protein [Francisella tularensis subsp. holarctica 257]
 gi|156252075|gb|ABU60581.1| ATPase, AAA family [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 859

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    ++   +      +   +     + +  +   E LK+         L    
Sbjct: 390 AIDLVDEAASQIRMEI----DSKPEKMESLYRRIIQLKMQREQLKKEKDDATKKRLEILE 445

Query: 567 TEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISI 620
            E   +D     + + ++      +    L  + E+ + ++ +    G+  K A L    
Sbjct: 446 QEIKGLDSEYKGLEELWKAEKLKMQGTSKLKEELEKAKFELEKYQRVGDLSKMAELQYGK 505

Query: 621 LHEVHIQIHQIESQEA 636
           + E+  QI QIE  EA
Sbjct: 506 IPELEAQIKQIEETEA 521


>gi|328949576|ref|YP_004366911.1| hypothetical protein Marky_0036 [Marinithermus hydrothermalis DSM
           14884]
 gi|328449900|gb|AEB10801.1| hypothetical protein Marky_0036 [Marinithermus hydrothermalis DSM
           14884]
          Length = 367

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 24/68 (35%)

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
              +    AL  Y       R+  E+E ++       +AE+   +      +   +    
Sbjct: 4   KALEARLDALRGYLDIPAKERRLAELEAELNDPNLWNDAERARRISQEAARIRRTVETYR 63

Query: 633 SQEAMIEG 640
           + EA +EG
Sbjct: 64  TLEADLEG 71


>gi|320450850|ref|YP_004202946.1| M23 peptidase domain-containing protein [Thermus scotoductus SA-01]
 gi|320151019|gb|ADW22397.1| M23 peptidase domain protein [Thermus scotoductus SA-01]
          Length = 430

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 68/215 (31%), Gaps = 30/215 (13%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK--PSL 482
              +  R++ L ++         R  ++ A    Q    +  ++ +  +    +K   SL
Sbjct: 60  LSRLSTRVENLLKEKARLEGEITRLERERAALSRQIAQLKEEIRRTEGRIAQLEKDLESL 119

Query: 483 REAALLLTLIN--HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +E   L  L+   H          L    + +     + +        Q      ++ + 
Sbjct: 120 KER--LQALMRSLHREKAGRYLPLLRAQSFTD---LAVRARWVGYISRQD----ADLVRT 170

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L       L ++ +R        +A  +A                   R L  QK+E+E 
Sbjct: 171 LQTT-LKALREERERLSLLLADLTAKEKALGET--------------QRALEEQKKELEA 215

Query: 601 QIAQVTAK--GEAEKTAILISILHEVHIQIHQIES 633
            ++ +  +  G+       +     +  ++ Q+++
Sbjct: 216 TLSSLEREAQGKRALLREALQERQRLQAELAQLQA 250


>gi|297689245|ref|XP_002822068.1| PREDICTED: MICAL C-terminal-like protein-like [Pongo abelii]
          Length = 665

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            +L+K    L      ++ +  + I ++L E    +   ++     +  L          
Sbjct: 513 KKLEKAMKQLVKQEELKRLYKAQAIQRQLEEVEERQRASEIQGVRLEKALRGEADRGTQD 572

Query: 573 DVR--QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           + +  Q + Q L L      L ++  E   +      + +  +   + + L +V  Q  +
Sbjct: 573 EAQLLQEWAQELELEDHQSRLEQKLREKMLKEESQKDEKDLNEEQEIFTELMQVIEQRDK 632

Query: 631 I 631
           +
Sbjct: 633 L 633


>gi|296487978|gb|DAA30091.1| centrosomal protein of 290 kDa [Bos taurus]
          Length = 1453

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/316 (11%), Positives = 97/316 (30%), Gaps = 22/316 (6%)

Query: 346  NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
                    + G D D   +        + +  S   +++ ++ E  N+       +    
Sbjct: 1117 KDAYSRPSTSGIDSDDHYQREQ-ELQRENLKLSSENIELKFQLEQANKDLPRLKNQVRDL 1175

Query: 406  IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQ 464
              +   +   K +  R         R  +   +         +  +K  R  +Q K  S 
Sbjct: 1176 KEMCEFLKKEKAEVERKLGRVRGSGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASG 1235

Query: 465  RLMQSSLVKGKLSKKPSLREAALLL------TLINHPAILQEQYQELADIRYDNNELQKL 518
             L    +   ++  +    E   L         +++ +  +   + +A+      EL+K+
Sbjct: 1236 ILTSEKMANIEMENEKLKAELEKLKVHLGRQLSMHYESKAKGTEKIVAENERLRKELKKI 1295

Query: 519  WSFLFSDFVEQKYFLPEEIHQRLC---------ERGFGELLKQLD--RQVRDAGLWSATT 567
               +     E      + + + L          E+   EL+ +++  +         +  
Sbjct: 1296 --EILKHVPEGDE-TEQGLQRELRVLRLANSQLEKEKEELIHRIEISKDQNGPDSTISDP 1352

Query: 568  EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            +  +  ++    Q        + L  + ++++K++         E   +  +   EV   
Sbjct: 1353 DHLMEKIKDLETQLRTSDMEKQHLKEEIQKLKKELENFDPSFFEEIEDLKYNYKEEVKKN 1412

Query: 628  IHQIESQEAMIEGFGK 643
            I   E  + + E FG 
Sbjct: 1413 ILLEEKLKKLSEQFGV 1428


>gi|281182902|ref|NP_001162426.1| cingulin [Papio anubis]
 gi|229553904|sp|A9X1A5|CING_PAPAN RecName: Full=Cingulin
 gi|163781024|gb|ABY40800.1| cingulin (predicted) [Papio anubis]
          Length = 1197

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 76/209 (36%), Gaps = 11/209 (5%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLT 490
            Q+ +         G    K    +D     + L +    K ++ ++  LRE  L  L  
Sbjct: 437 AQVMELQNKLKQVQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALKG 496

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
            +    +     +     +    + ++L   +     +      E   ++        L 
Sbjct: 497 ALKE-EVASRDQEVEHVRQQYQRDTEQLRRSMQDATQDHAVLEAE---RQKMSALVRGLQ 552

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY----KRFRLLSRQKEEIEKQIAQVT 606
           ++L+    + G W +  + N  D+R   Q+ L L     +    L  + E +++++ Q  
Sbjct: 553 RELEETSEETGHWQSMFQKNKEDLRATKQELLQLRMEKEEMEEELGEKIEVLQRELEQAR 612

Query: 607 -AKGEAEKTAILISILHEVHIQIHQIESQ 634
            + G+  +  +L   L +   ++ +++++
Sbjct: 613 ASAGDTRQVEVLKKELLQTQEELKELQAE 641



 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 72/218 (33%), Gaps = 7/218 (3%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
              I+   Q L        +          R +  +  ++   +S   + +  K    + +
Sbjct: 907  DEIQRLRQALQASQAERDTARLDKELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEKVS 966

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L   L      ++     +   R   +++ +L + L  +   ++    ++I      + 
Sbjct: 967  RLEAELDEEKNTVELLTDRVNRGR---DQVDQLRTELLQERSARQDLECDKISLERQNKD 1023

Query: 546  FGELLKQLDRQVRDA---GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                L   +   + +       +  +     ++   ++   L    R L R+ +E+  QI
Sbjct: 1024 LKTRLASSEGFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERKVKELSIQI 1083

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             +   +   ++   L   +  +  Q+ + E +   ++G
Sbjct: 1084 -EDERQHVNDQKDQLSLRVKALKRQVDEAEEEIERLDG 1120



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 98/290 (33%), Gaps = 28/290 (9%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               +   +        ++       W  E E  S      + E++   +       ++  
Sbjct: 871  DDYKEKARREVADAQRQAKD-----WASEAEKTSGGLSRLQDEIQRLRQALQASQAERDT 925

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                 + +  RLQ L Q+   +        ++     ++    +  +       +L    
Sbjct: 926  ARLDKELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEKVSRLEAELDEEKNTVELLTDR 985

Query: 481  SLREA----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDFV 527
              R       L   L+   +  Q+   +   +   N +L+ +L S           S   
Sbjct: 986  VNRGRDQVDQLRTELLQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLE 1045

Query: 528  EQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             Q   L E +     E+       ++L+R+V++  +       ++ D +        L  
Sbjct: 1046 SQNQLLQERLQAEEREKTVLQSTNRKLERKVKELSIQIEDERQHVNDQKDQ------LSL 1099

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
            R + L RQ +E E++I ++   G  +K    +   HEV+ Q+  +I+S E
Sbjct: 1100 RVKALKRQVDEAEEEIERLD--GLRKKAQRELEEQHEVNEQLQARIKSLE 1147


>gi|167535278|ref|XP_001749313.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772179|gb|EDQ85834.1| predicted protein [Monosiga brevicollis MX1]
          Length = 529

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 52/149 (34%), Gaps = 17/149 (11%)

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           E  + ++ +  + N+L      L+ +  E      E +           L +Q+      
Sbjct: 58  EVQEHVSRLENEVNDLNAQLVKLYQERSEASNRENEALRHA------QRLAEQVKDLQEQ 111

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE------- 612
             +  A  +     VR+  Q+      + + L  +   +  + A    K E E       
Sbjct: 112 LEMVEAQRDERADAVRKLQQEIKQERIKSQTLHDELVALSMEFAAAANKDEEEAKKYQAA 171

Query: 613 --KTAILISILHEVHIQIHQIESQ--EAM 637
             +   L++ + E+  Q   ++++  EA+
Sbjct: 172 VRERDELLARVMEIKQQQVNLQNELNEAL 200


>gi|149040860|gb|EDL94817.1| CDC42 binding protein kinase alpha, isoform CRA_b [Rattus
           norvegicus]
          Length = 1535

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 47/107 (43%), Gaps = 12/107 (11%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596
            L  +   E +++L +QV +        E       ++   ++Q  A  K+ + L +++E
Sbjct: 486 DLEIKSLKEEIEKLRKQVAEVNHLEQQLEEANSVRRELDDAFRQIKAFEKQIKTLQQERE 545

Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634
           E+ K++ Q + + + +   +          +    E++ ++ ++ +Q
Sbjct: 546 ELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592


>gi|123967284|ref|XP_001276834.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121918820|gb|EAY23586.1| hypothetical protein TVAG_119220 [Trichomonas vaginalis G3]
          Length = 325

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 79/251 (31%), Gaps = 23/251 (9%)

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
            +    L   I  I     R  Y+Q   ++     +     +       + +    + + 
Sbjct: 79  EKKNQELLEHIQKIT--AERDSYAQDASEKKFFEEEIQKKNNEIISLTQQLSVSKHNVEI 136

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL----QK 517
              +L   S    +   +   +   L   ++    +LQ++ QEL   +  N EL     K
Sbjct: 137 LQVQLKSQSFDSAENPIETETQINHLNEEILQLRDLLQKKAQELGAAQAQNKELTLKNSK 196

Query: 518 LWSFLF------------SDFVEQKYFLPEEI---HQRLCERGFGELLKQLDRQVRDAGL 562
           L   +             +  +  + +    +    Q L  +   +L  ++D   + A  
Sbjct: 197 LQDQIHQNELMLSVLSSENKMLSGENYDKSIVENHAQHLANKYLNDLYGKVDNLEKKASS 256

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
            +             ++Q          L  Q  E E++I        A K A  ++ + 
Sbjct: 257 LTTKLLTLSNMPISSHKQE--DLDEINDLKEQLAEAEEKIQDFEENDYAPKYAAAMTRIK 314

Query: 623 EVHIQIHQIES 633
           E+  ++ Q E+
Sbjct: 315 ELERRLQQYEN 325


>gi|157867351|ref|XP_001682230.1| kinesin [Leishmania major strain Friedlin]
 gi|68125682|emb|CAJ04113.1| putative kinesin [Leishmania major strain Friedlin]
          Length = 807

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 50/130 (38%), Gaps = 15/130 (11%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR--QGYQQALALY 585
           +Q      E+  R  +    +             +         ++ R  +     LAL+
Sbjct: 366 QQAKQDGSELGDRWRDEYLRKKEALYAEYQLKGTIEKLLARIAELEARLRECADDELALH 425

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQ-EAMI 638
                L+ + EE++K + +   +   +      +  +L   L E++ ++ +++ + E  +
Sbjct: 426 -----LTTEIEELQKALTEADYQMGLQRQILYGEFLMLEDELRELNTKMQEMKEEHEEAM 480

Query: 639 EG-FGKMSGR 647
           EG  G+ +GR
Sbjct: 481 EGLLGEEAGR 490


>gi|40849886|gb|AAR95655.1| plectin 1 [Rattus norvegicus]
          Length = 4574

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 84/247 (34%), Gaps = 43/247 (17%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             L   Y + I + L+++ ++            ++ A         ++L + +  + K   
Sbjct: 1355 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAE-AHAQAKAQA 1413

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +   RE            + +   +E+        + Q+    +  +    +     EI 
Sbjct: 1414 ELEARE------------LQRRMQEEVTRREEAAVDAQQQKRSIQEELQHLRQSSEAEIQ 1461

Query: 539  QRLCERGFGELLK-QLDRQVRDAGLWS------------------ATTEANIVDVRQGYQ 579
             +  +    E  + +++ ++R   L                    A  E      RQ  +
Sbjct: 1462 AKAQQVEAAERSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQE 1521

Query: 580  QALALYKRFRLLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIH 629
            +A  L ++ +  S++K + E ++A   +  A+   EK    +  L E+         ++ 
Sbjct: 1522 EAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLR 1580

Query: 630  QIESQEA 636
            Q E++ A
Sbjct: 1581 QAEAERA 1587



 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2273 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2332

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2333 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2392

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2393 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2452

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2453 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2507

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2508 QEQILQETQALQKSFLSEKDSLLQRERFIE 2537



 Score = 40.6 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2233 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2292

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2293 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2352

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2353 KAEAELLQQQKELAQEQA 2370



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1684 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1743

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1744 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1802


>gi|148231027|ref|NP_001084490.1| epidermal growth factor receptor pathway substrate 15-like 1
           [Xenopus laevis]
 gi|32364687|gb|AAP80383.1| EH domain protein [Xenopus laevis]
          Length = 897

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 60/164 (36%), Gaps = 20/164 (12%)

Query: 498 LQEQYQELADIRYD-NNELQKLWSFLFS-----DFVEQKYFLPEEIHQRLCERGFGELLK 551
           +Q+    +    +    EL ++   +         +EQ     EE  ++       EL  
Sbjct: 367 IQDSSSSIGSGEFTGVKELDEISQEIAQLQREKYALEQDIREKEEAIRQ-KSTEVQELQN 425

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-------YKRFRLLSRQKEEIEKQIAQ 604
            LDR+        A  +     + +  QQ   L        ++ +   +    ++ QI  
Sbjct: 426 DLDRETSTLQELEAQKQDAQDRLDEMDQQKAKLKDMLSDVRQKCQEEGQMISSLKIQIQS 485

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             +  +A++       L+    ++++++ +E+ +E     +GR+
Sbjct: 486 QESDVKAQE-----EELNRTKSELNRLQQEESQLEQ-SIQAGRV 523


>gi|73955663|ref|XP_860692.1| PREDICTED: similar to myosin, heavy polypeptide 10, non-muscle
            isoform 3 [Canis familiaris]
          Length = 1983

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 883  EEMERKHQQLLEEKNILTEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 942

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 943  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1002

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1003 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1056

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +        
Sbjct: 1057 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKVQLAKKE---EELQGALARGDDETLHK 1113

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1114 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1161



 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 83/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + R +L   ++     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1398 EEARKKLLKDVEALGQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQIASNLEKKQ 1457

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1458 KKFDQLLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALETKEEFERQ 1512

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1513 NKQLRADMEDLISSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1572

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1573 EVNMQAMKAQFERDLQTRDEQNEEKKRLLVKQVRELEAELEDERKQRALAVASKKKLEID 1632

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1633 LKDLEAQIEA 1642


>gi|73955661|ref|XP_850098.1| PREDICTED: similar to myosin, heavy polypeptide 10, non-muscle
            isoform 2 [Canis familiaris]
          Length = 2007

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 907  EEMERKHQQLLEEKNILTEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 966

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 967  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1026

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1027 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1080

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +        
Sbjct: 1081 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKVQLAKKE---EELQGALARGDDETLHK 1137

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1138 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1185



 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 83/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + R +L   ++     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1422 EEARKKLLKDVEALGQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQIASNLEKKQ 1481

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1482 KKFDQLLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALETKEEFERQ 1536

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1537 NKQLRADMEDLISSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1596

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1597 EVNMQAMKAQFERDLQTRDEQNEEKKRLLVKQVRELEAELEDERKQRALAVASKKKLEID 1656

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1657 LKDLEAQIEA 1666


>gi|32127776|dbj|BAC78167.1| tricohyalin homologue [Pan troglodytes]
          Length = 756

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 46/120 (38%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 541 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 600

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+    + +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 601 RREHAKAVVSLHQIQRRAAQEKERSQELRRLQEEARKEEGQRLAQRLQELERDKNLMLAT 660


>gi|5360901|dbj|BAA82158.1| HCR [Homo sapiens]
 gi|15277220|dbj|BAB63313.1| Tricohyalin homologue [Homo sapiens]
 gi|27544405|dbj|BAC54937.1| tricohyalin homologue [Homo sapiens]
          Length = 756

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 541 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 600

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 601 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 660


>gi|332184862|gb|AEE27116.1| ClpB protein [Francisella cf. novicida 3523]
          Length = 859

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 2/132 (1%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    ++   + S   + +      I  ++      +   +  ++  +       
Sbjct: 390 AIDLVDEAASQIRMEIDSKPEKMESLYRRIIQLKMQREQLKKEKDEATKKRLEILETEIK 449

Query: 567 TEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHEV 624
              +     +   +A  L  +    L  Q E+ + ++ +    G+  K A L    + E+
Sbjct: 450 GLESEYQGFEELWKAEKLKMQGASKLKEQLEKTKFELEKYQRAGDLSKMAELQYGKIPEL 509

Query: 625 HIQIHQIESQEA 636
             QI QIE+ EA
Sbjct: 510 EAQIKQIENTEA 521


>gi|317121054|ref|YP_004101057.1| peptidase M23 [Thermaerobacter marianensis DSM 12885]
 gi|315591034|gb|ADU50330.1| Peptidase M23 [Thermaerobacter marianensis DSM 12885]
          Length = 460

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 73/245 (29%), Gaps = 48/245 (19%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              +R ++ +  +             ++             L      +  ++++  + E
Sbjct: 86  ISELRQKINEANETLRQLEQEQAEAQRR-------------LKALKEDEASIAERVRILE 132

Query: 485 AALLLTLINHPAILQEQYQELA-------DIRYDNNELQK----LWSFLFSDFVEQKYFL 533
             +  T I    + ++  +  A       +I     +L++    +   + +        +
Sbjct: 133 EQIRATRIKLAELTEQVREAEARVAAKQQEIDEATRQLEQREDYVARRIRAIQENGTVGV 192

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            E + +      F   L  L + +R      A  +A    +    QQ  A  +R   L  
Sbjct: 193 LEVLFEANSFSDFLTRLDLLSQILRHDLDVMAQVKAERERLVAEKQQLEAERQRLVALKA 252

Query: 594 QKEEIEKQIAQ-----------------------VTAKGEAEKTAILISILH-EVHIQIH 629
           Q E  ++Q+                            + ++++   L+  L  ++  ++ 
Sbjct: 253 QVERQQQQLNATVASHRDELAKLAEQRRKIEEQLAALEADSKEVERLLKNLQADLKRRLA 312

Query: 630 QIESQ 634
           ++   
Sbjct: 313 ELNRT 317


>gi|297842179|ref|XP_002888971.1| ATHSP101 [Arabidopsis lyrata subsp. lyrata]
 gi|297334812|gb|EFH65230.1| ATHSP101 [Arabidopsis lyrata subsp. lyrata]
          Length = 911

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + +   +              + + +      
Sbjct: 391 AIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALER------EKDKASKARLIE 444

Query: 567 TEANIVDVRQGYQQALALYKRF-------RLLSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
               + D+R   Q     Y++        R L +++EE+   + +   + +  + A L  
Sbjct: 445 VRKELDDLRDKLQPLTMKYRKEKERIDEIRRLKQKREELMFSLQEAERRYDLARAADLRY 504

Query: 619 SILHEVHIQIHQIESQ 634
             + EV   I Q+E  
Sbjct: 505 GAIQEVESAIAQLEGT 520


>gi|296193130|ref|XP_002744375.1| PREDICTED: transcription elongation regulator 1-like isoform 2
           [Callithrix jacchus]
          Length = 1098

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 631 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 690

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 691 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 738

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 739 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 787

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 788 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 847

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 848 AKNLDSDKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 900


>gi|292493498|ref|YP_003528937.1| replicative DNA helicase [Nitrosococcus halophilus Nc4]
 gi|291582093|gb|ADE16550.1| replicative DNA helicase [Nitrosococcus halophilus Nc4]
          Length = 466

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 47/153 (30%), Gaps = 6/153 (3%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K+       E ++L  L+       +    L+   +   + + L+  +       +    
Sbjct: 18  KVPPHSIEAEQSVLGGLLLDNQAWDQIADILSVEDFYRQDHRLLFHSMGELIERSQPCDV 77

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L +    ++L+++        L   T  A      + Y + +      R L R 
Sbjct: 78  VTLSEWLKD---KQVLEEVGGLAYLTSLARNTPTAA---NIKAYGEVVRERSVLRQLIRV 131

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             +I     Q   +   E        + E+  Q
Sbjct: 132 GTDIAGNAYQPGGRNSGELLDEAEKRVFEIAEQ 164


>gi|225856754|ref|YP_002738265.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae P1031]
 gi|225725240|gb|ACO21092.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae P1031]
          Length = 633

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q +          A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KVTAEM-SQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L + L ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625


>gi|329664094|ref|NP_001192605.1| envoplakin [Bos taurus]
 gi|297487414|ref|XP_002696218.1| PREDICTED: envoplakin-like [Bos taurus]
 gi|296476018|gb|DAA18133.1| envoplakin-like [Bos taurus]
          Length = 2033

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 57/157 (36%), Gaps = 19/157 (12%)

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG----- 547
              P +LQE  +  + +    +E + L   L     +      ++    L ER        
Sbjct: 1144 QDPRLLQEASRLRSLLEVQRSENEVLARELKELHSKHSAAEKQKPRVDLQERVQETFRVD 1203

Query: 548  -ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
             E  +++ +   +             +V +   + + L  +   +  + +E+ +++ +  
Sbjct: 1204 PETEREIAQLRAELQETGRKRNGTEQEVERLLSELVVLRAQKPTV--EYKEVTQELVR-- 1259

Query: 607  AKGEAEKTAILISILHEVHIQIHQI-----ESQEAMI 638
                 EK   L+  +  +  Q++++      +QE +I
Sbjct: 1260 ----HEKNPELLREIDRLKAQLNELVNGSGRAQEQLI 1292


>gi|118097026|ref|XP_423749.2| PREDICTED: similar to TATA element modulatory factor 1 [Gallus
           gallus]
          Length = 1105

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 68/203 (33%), Gaps = 8/203 (3%)

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
              E        K+N + ++ +   Q L Q    K  L K+       L + +      L
Sbjct: 591 RAKEKERENINTKQNKKIKELEEELQHLKQVLDGKEDLEKQHRDSIKQLNIVVERQEKDL 650

Query: 499 QEQYQELADIRYDNN----ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQ 552
            +   E+ D+   N      L   +  L            E     L        EL   
Sbjct: 651 AKLQAEVEDLEERNRSVQAALDSAYKELADLHKANATKDSEAQEAALSREMKAKEELGLA 710

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           L++   +A          + D+R   Q+A     ++   L ++  E+++++ +  ++   
Sbjct: 711 LEKAKDEARQQQEALAIQVADLRLALQRAEQQAARKEDYLRQEISELQQRLQEAESR-NQ 769

Query: 612 EKTAILISILHEVHIQIHQIESQ 634
           E +  + S    +  QI  +++ 
Sbjct: 770 ELSQSVTSATRPLLRQIENLQAT 792


>gi|66773050|ref|NP_001019619.1| myosin-11 [Danio rerio]
 gi|66171111|gb|AAY42972.1| smooth muscle myosin heavy chain [Danio rerio]
          Length = 1974

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 81/293 (27%), Gaps = 23/293 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                 + +   E+  ++     +     E E        ++ ELE  L      +++++ 
Sbjct: 875  DIALKHTQLMDERNQLQEKLQAETELYAEAEEMRVRLASKKQELEEILHEMEARLEEEED 934

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    Q  + ++ +  +             +K    +       + ++  ++        
Sbjct: 935  RGAALQMEKKKMHEQIKDLEEHLEEEEDARQKLQLEKVTCDAKIKKLEDDILIMDDQNNK 994

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF-----------LFSDFVEQ 529
              +E  +L         + +    LA+    +  L KL +            L  +   +
Sbjct: 995  LQKERKILE------ERIADFSSNLAEEEEKSKNLTKLKNKHESMISELEVRLKKEEKTR 1048

Query: 530  KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----ALY 585
            +     +           E +  L  Q+ D     A  E  +       +          
Sbjct: 1049 QELDKAKRKLEAESNDLQEQIADLQAQIADLKAQLAKKEEELQAALARLEDETGQKNNAL 1108

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQEA 636
            K+ R L     ++++ +    A     +     L   L  +  ++       A
Sbjct: 1109 KKIRELEGHISDLQEDLESERAARNKAEKTKRDLGEELEALKSELEDTLDTTA 1161



 Score = 37.2 bits (84), Expect = 8.9,   Method: Composition-based stats.
 Identities = 31/295 (10%), Positives = 89/295 (30%), Gaps = 19/295 (6%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
                     +   +KL + +        +   + +     + +  +E H+      + D 
Sbjct: 1315 VQDTQELLAEETRQKLQLSTKLRQIEDDRNALQEQLDEEAEAKRNVERHVSTLNIQLSDF 1374

Query: 419  KLRYY-------YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSS 470
            K +           +  + RLQ+  +   T+       + K  + +++ +   +  +   
Sbjct: 1375 KKKLEEMTGNVELLEEGKKRLQRDLEAANTQFEEKAAAYDKLEKTKNRLQQELEDTLMDL 1434

Query: 471  LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE----LQKLWSFLFSDF 526
              + +L      ++      L    +I  +   E      +  E       L   L    
Sbjct: 1435 DNQRQLVSNLEKKQKKFDQMLAEEKSISSKYADERDRAEAEAREKETKALSLARALEEAQ 1494

Query: 527  VEQKYFLPE--EIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
              ++ F      +   + +        G+ + +L++  R         +  + ++    Q
Sbjct: 1495 EAREEFERANKALRAEMEDLVSSKDDVGKNVHELEKSKRGLEAQVEEMKTQLEELEDELQ 1554

Query: 580  QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             A     R  +  +  +   ++  Q   +   EK   L+  + E+  ++     Q
Sbjct: 1555 AAEDAKLRLEVNMQALKAQFERDLQGRDEQGEEKKRQLVKQVRELETELEDERKQ 1609


>gi|86608559|ref|YP_477321.1| replicative DNA helicase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557101|gb|ABD02058.1| replicative DNA helicase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 591

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/141 (9%), Positives = 42/141 (29%), Gaps = 10/141 (7%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L  +    E  +L  ++  P  L    + L    +  +  Q+++        + +    
Sbjct: 12  RLPPQNIEAEEEILGGILLDPDALVRVAEFLRPEMFYISAHQEIYRAALQLHSQGQPTDL 71

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L +         L+R      +     +         Y + +      + + RQ
Sbjct: 72  MTVSAWLADHHL------LERVGGTGAIRRLLEQTVSSVNIDQYARLVMD----KYMRRQ 121

Query: 595 KEEIEKQIAQVTAKGEAEKTA 615
             ++   +A++        + 
Sbjct: 122 LIQVSNTLARLAYDTSQPLSQ 142


>gi|73955667|ref|XP_860759.1| PREDICTED: similar to myosin, heavy polypeptide 10, non-muscle
            isoform 5 [Canis familiaris]
          Length = 1992

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 892  EEMERKHQQLLEEKNILTEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 951

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 952  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1011

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1012 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1065

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +        
Sbjct: 1066 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKVQLAKKE---EELQGALARGDDETLHK 1122

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1123 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1170



 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 83/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + R +L   ++     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1407 EEARKKLLKDVEALGQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQIASNLEKKQ 1466

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1467 KKFDQLLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALETKEEFERQ 1521

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1522 NKQLRADMEDLISSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1581

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1582 EVNMQAMKAQFERDLQTRDEQNEEKKRLLVKQVRELEAELEDERKQRALAVASKKKLEID 1641

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1642 LKDLEAQIEA 1651


>gi|332231117|ref|XP_003264744.1| PREDICTED: myosin-9 isoform 1 [Nomascus leucogenys]
          Length = 1929

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 86/265 (32%), Gaps = 28/265 (10%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EKL ++     +     E E        ++ ELE    +    +++++ R  + Q  + 
Sbjct: 887  AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQTEKK 946

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++QQ  Q+   +        +K    +       + ++   +  +       +E  LL  
Sbjct: 947  KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEEQIILEDQNCKLAKEKKLLE- 1005

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +                      E    +L 
Sbjct: 1006 -----DRIAEFTTNLTEEEEKSKSLAKLKNK--------------------HEAMITDLE 1040

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L R+ +       T      D      Q   L  +   L  Q  + E+++    A+ E
Sbjct: 1041 ERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVE 1100

Query: 611  AEKTAILIS--ILHEVHIQIHQIES 633
             E     ++   + E+  QI +++ 
Sbjct: 1101 EEAAQKNMALKKIRELESQISELQE 1125



 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 70/228 (30%), Gaps = 15/228 (6%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            + ++ +    + +R+   +L  +            K     +D +       ++     K
Sbjct: 1586 QSEEKKKQLVRQVREMEAELEDERKQRSMAVAARKKLEMDLKDLEAHIDSANKNRDEAIK 1645

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +K   +    +  L         + + LA  + +  +L+ + + +     E       
Sbjct: 1646 QLRKLQAQMKDCMREL---DDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERA 1702

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +   +   EL  ++        L           + Q  ++         L++ + 
Sbjct: 1703 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELINDRL 1759

Query: 596  EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIESQ 634
            ++   QI Q+      E++           L     E+ +++ ++E  
Sbjct: 1760 KKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKVKLQEMEGT 1807


>gi|320580186|gb|EFW94409.1| hypothetical protein HPODL_3909 [Pichia angusta DL-1]
          Length = 849

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 91/295 (30%), Gaps = 18/295 (6%)

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM--LWKRETENRSFNTPDERAELEIHLK 409
                 D +  ++       + L+ E     +      +  E +     D+  +     +
Sbjct: 441 CYQEKLDREVSLKNDEIHKSKALVEELKSKCEQLKQLNQLLETQMNELKDQHDQKLKEAQ 500

Query: 410 -NCINHIKDQKLRYYYSQAIRDRLQ------QLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                 ++D        Q   ++ +       L +  I+E        ++          
Sbjct: 501 QELRVSLEDVDRLRKVIQEAEEQGRKMGCELALKESEISELRENNTKLQQEISSSSMGFN 560

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN-NELQKLWSF 521
            +        + KL  +  +RE  +         ++QE  + LA     +   L+     
Sbjct: 561 LKSKKLEEEFQTKLETELEVREKEIQSL----KNLMQENSKNLASEHEKDTQTLKSQHDQ 616

Query: 522 LFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
               F E+     E +     +      E ++ L +++    +  +  +           
Sbjct: 617 TIESFKEKHQHELESLKVEHEKQMAPLRERIESLIKELDANNVMMSEFQNTHDKQISEMN 676

Query: 580 QALALY-KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +     K      R+ E+++ ++AQV  K + +    L S L  +  +++ ++S
Sbjct: 677 HSTEEMAKELESKEREIEDLKNKLAQVETKSKND-IRNLRSQLESMKTKMNVLDS 730


>gi|291515290|emb|CBK64500.1| ATP-dependent chaperone ClpB [Alistipes shahii WAL 8301]
          Length = 865

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 68/215 (31%), Gaps = 13/215 (6%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKK-----NARHRDQKGPSQRLMQSSLVKGKLSK 478
           Y     +RL+ + Q+          +  +      A        +  +++ +L +G+L  
Sbjct: 250 YQGEFEERLKAVVQEVTASEGEILLFIDEIHTLVGAGKSSGAMDAANILKPALARGELRT 309

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             +              A+ + ++Q++        +   +   L   +            
Sbjct: 310 IGATTLDEFQKYFEQDKAL-ERRFQKVMVDEPSQEDAISILRGLKERYENHHQV------ 362

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R+ +      ++   R +    L     +       +   +  ++ +    L R+  ++
Sbjct: 363 -RIKDEAIVAAVELSTRYITSRFLPDKAIDLVDEAASRLRLEMNSVPEEIDTLDRRVRQL 421

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           E +   +  + + E+   L   + E+  +  ++ +
Sbjct: 422 EIEREAIRREKDKERVEHLTKEIEELKARDAEMRA 456


>gi|281347939|gb|EFB23523.1| hypothetical protein PANDA_009486 [Ailuropoda melanoleuca]
          Length = 1255

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 88/278 (31%), Gaps = 10/278 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y +    +L      L +   + E    +     +   L           +D+ 
Sbjct: 969  QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTTMKLQDEMRLMEEELRDYQRAQDEA 1028

Query: 420  L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L  R    Q ++D   +L  K   +        +   +    +   +    +S +  +  
Sbjct: 1029 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERI 1088

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLP 534
             +   +   +   L+   A+ Q+   +   +   N +L+     L   +    E      
Sbjct: 1089 TRSREQLEQMRSELLQERAVKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQM 1148

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLL 591
            E     L +R   E   +   Q  +  L     E  +    +      Q   L  R + +
Sbjct: 1149 EARIAELEDRLESEERDRASLQFSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAM 1208

Query: 592  SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             RQ EE E++I ++ +    +K    +    +V+ Q+ 
Sbjct: 1209 KRQVEEAEEEIDRLESS--KKKLQRELEEQMDVNEQLQ 1244



 Score = 37.9 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 89/252 (35%), Gaps = 15/252 (5%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           +++ +L   +      ++ +       +  R+R++   ++   +H           +  +
Sbjct: 608 EQKNKLTAEVAELQRQLQLEVKNQQNMKEERERMRVSLEELQGQHDSKVEENSVLQQRLE 667

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +     R     L + K+ ++    +   L        + +   +  +  R ++ E   L
Sbjct: 668 KSEGELRKNLEELFQVKMEREQHQTQIRDLQ-----DQLSEMHDELDSAKRSEDREKGAL 722

Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLW----SATTEAN 570
              L     + +  L  +  Q    R  ER    L   L  +V    L         +A 
Sbjct: 723 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVASHDLEMDKLKEQYDAE 782

Query: 571 IVDVRQGYQQALALYKRFRLL-SRQKEEIEKQI-AQVTAKGEAEKTAILISILHEVHIQI 628
           +  +R+  ++A        +L SR     + Q+ A++  K   E+   L   + E+   +
Sbjct: 783 LQVLRESVEEATKASHNVEVLASRSNTSEQSQLGAELHVKALQEEKEKLRESIEELEQSV 842

Query: 629 HQIESQEAMIEG 640
            +++ Q A ++G
Sbjct: 843 TRLQRQIADVKG 854


>gi|256221767|ref|NP_001157780.1| plectin isoform 1a [Rattus norvegicus]
          Length = 4544

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 23/237 (9%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1325 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1384

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    +  +   +        +  Q+   I+    ELQ L     ++   +   +    
Sbjct: 1385 LEARELQRRMQEEVTRREEAAVDAQQQKRSIQ---EELQHLRQSSEAEIQAKAQQVEAAE 1441

Query: 538  HQRLCERGFGELLK-QLDRQVR-------DAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              R+       +++ QL+   R       +     A  E      RQ  ++A  L ++ +
Sbjct: 1442 RSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQ 1501

Query: 590  LLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIHQIESQEA 636
              S++K + E ++A   +  A+   EK    +  L E+         ++ Q E++ A
Sbjct: 1502 DESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLRQAEAERA 1557



 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2243 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2302

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2303 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2362

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2363 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2422

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2423 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2477

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2478 QEQILQETQALQKSFLSEKDSLLQRERFIE 2507



 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2203 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2262

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2263 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2322

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2323 KAEAELLQQQKELAQEQA 2340



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1654 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1713

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1714 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1772


>gi|227546362|ref|ZP_03976411.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|317482557|ref|ZP_07941572.1| peptide chain release factor 2 [Bifidobacterium sp. 12_1_47BFAA]
 gi|227213343|gb|EEI81215.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|316915979|gb|EFV37386.1| peptide chain release factor 2 [Bifidobacterium sp. 12_1_47BFAA]
          Length = 374

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 3/106 (2%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E I + L        +K L+ Q    GLW     A    +      A +  KR    S++
Sbjct: 18  ESIAKALDVDRLKADIKDLETQAAAPGLWDDPENA--QKITSRLSAAESQLKRLNSASQR 75

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +++E  +     +G+ +        + E+   + Q+E Q  +++G
Sbjct: 76  IDDVETLVELGHEEGDQDSLDEAQGEIGEIQKDLDQMEIQT-LLDG 120


>gi|168014045|ref|XP_001759568.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689107|gb|EDQ75480.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 427

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 17/166 (10%)

Query: 491 LINHPAILQEQYQELADIRYDNN-ELQKLWSF----LFSDFVEQKYFLPEEIHQRLC--- 542
           ++  P IL E YQ +A  + DN   L+++       +     +        +   L    
Sbjct: 211 MVVTPPILVEYYQRMAVEKMDNEFSLRQILEEKDKIIEDQKKKIGDLQRASVTDALKYSR 270

Query: 543 -ERGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQG-YQQALALYKRFRLLSRQKEEI 598
            E  F E   +   + ++  + +     E+    +    ++Q+ +L      L R+  E+
Sbjct: 271 LEYQFKETQAEWAKENKLAKSLMELTKQESGRSKLEDDFWRQSESLKMENEQLKRRIAEL 330

Query: 599 EKQI-----AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           E ++      Q      +     L   +H +  Q+ + ++Q A++E
Sbjct: 331 EAKMITVTTQQREVNPASTSLRELEKQVHALEEQLKERDTQIALLE 376


>gi|225440602|ref|XP_002277825.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 763

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 40/311 (12%), Positives = 106/311 (34%), Gaps = 27/311 (8%)

Query: 358 DPDSFIRCYGKTAFEKLI------VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           DP+  +    +              + +  +     +  ++ +        E+   L+N 
Sbjct: 412 DPERKVNMKKREEPVADKTPDVELEDEVEKLKQQILKAKKSYTVLPESGLNEMIEKLQNE 471

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I H   + L+    +     L++ F K  T           +   + +   +QRL ++  
Sbjct: 472 IEHEYSEALQTMGLKDRFVMLREEFAKARTSQDELLHPALADKFTKLKDEFNQRLSEAPN 531

Query: 472 VKGKLSKKPSLREAALLLTLINHPAI--LQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
               ++K   L E +   T+        L+++  +      D  +L++    L ++    
Sbjct: 532 YPSLMNKLDMLNEISKAKTISEGNKATTLKQEINKRFKEVMDRADLKEKIEALKAEIENS 591

Query: 530 KYFLPEEIHQRLCER----------GFGELLKQL-------DRQVRDAGLWSATT--EAN 570
           +     ++   L E+             E+LK L       + +  D    +     ++ 
Sbjct: 592 EMSTIGDLDDELKEKIVRVKKEIEFEMAEVLKSLGLDVAGVESKAMDLIQETPVPGFQSK 651

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           I ++ +   + +    R   L  + E ++ ++A+     + E    + ++  E+   I +
Sbjct: 652 IEELNEEINKGIEDAIRSSDLKSKIELLKLELAKAGQTPDLESKDKIRALDQEIRQTIAE 711

Query: 631 IESQEAMIEGF 641
             +   ++E F
Sbjct: 712 AMNSSELLEKF 722


>gi|40849906|gb|AAR95665.1| plectin 11 [Rattus norvegicus]
          Length = 4545

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 23/237 (9%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1326 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1385

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    +  +   +        +  Q+   I+    ELQ L     ++   +   +    
Sbjct: 1386 LEARELQRRMQEEVTRREEAAVDAQQQKRSIQ---EELQHLRQSSEAEIQAKAQQVEAAE 1442

Query: 538  HQRLCERGFGELLK-QLDRQVR-------DAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              R+       +++ QL+   R       +     A  E      RQ  ++A  L ++ +
Sbjct: 1443 RSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQ 1502

Query: 590  LLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIHQIESQEA 636
              S++K + E ++A   +  A+   EK    +  L E+         ++ Q E++ A
Sbjct: 1503 DESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLRQAEAERA 1558



 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2244 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2303

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2304 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2363

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2364 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2423

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2424 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2478

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2479 QEQILQETQALQKSFLSEKDSLLQRERFIE 2508



 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2204 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2263

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2264 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2323

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2324 KAEAELLQQQKELAQEQA 2341



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1655 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1714

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1715 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1773


>gi|73955669|ref|XP_860794.1| PREDICTED: similar to myosin, heavy polypeptide 10, non-muscle
            isoform 6 [Canis familiaris]
          Length = 1982

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 882  EEMERKHQQLLEEKNILTEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 941

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 942  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1001

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1002 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1055

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +        
Sbjct: 1056 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKVQLAKKE---EELQGALARGDDETLHK 1112

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1113 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1160



 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 83/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + R +L   ++     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1397 EEARKKLLKDVEALGQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQIASNLEKKQ 1456

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1457 KKFDQLLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALETKEEFERQ 1511

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1512 NKQLRADMEDLISSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1571

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1572 EVNMQAMKAQFERDLQTRDEQNEEKKRLLVKQVRELEAELEDERKQRALAVASKKKLEID 1631

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1632 LKDLEAQIEA 1641


>gi|55821966|ref|YP_140408.1| replicative DNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55737951|gb|AAV61593.1| DNA polymerase III delta prime subunit [Streptococcus thermophilus
           LMG 18311]
          Length = 453

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/142 (9%), Positives = 42/142 (29%), Gaps = 6/142 (4%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              + ++     + E ++L  +  +P  L    + +    +     + ++  + +     
Sbjct: 3   EAQELRVQPHDLVAEQSVLGAIFINPEKLITVREFIEADDFYKYSHRVIFKAMVTLSDRN 62

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                  +   L ++        L      + L             + Y + +A     R
Sbjct: 63  DAIDATTVRTILDDQ------DDLQNIGGISYLVDLVNSVPTSANAEYYAKIVAEKAMLR 116

Query: 590 LLSRQKEEIEKQIAQVTAKGEA 611
            +  +  EI  Q  + T + + 
Sbjct: 117 RIINRLTEIINQAYEGTTESDE 138


>gi|7305095|ref|NP_038775.1| Golgin subfamily A member 5 [Mus musculus]
 gi|312222675|ref|NP_001185933.1| Golgin subfamily A member 5 [Mus musculus]
 gi|32469790|sp|Q9QYE6|GOGA5_MOUSE RecName: Full=Golgin subfamily A member 5; AltName: Full=Golgin-84;
           AltName: Full=Protein Ret-II; AltName: Full=Protein
           Sumiko
 gi|3551509|dbj|BAA33010.1| RET-II [Mus musculus]
 gi|23398485|gb|AAH16883.1| Golgi autoantigen, golgin subfamily a, 5 [Mus musculus]
 gi|56269367|gb|AAH86782.1| Golgi autoantigen, golgin subfamily a, 5 [Mus musculus]
          Length = 729

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 79/269 (29%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD----QKLRYYYSQAIRDRLQ 433
           +      + K   +            LE         ++D      L+    Q +++RL 
Sbjct: 294 AKDSQLAVLKVRLQEADQVLSSRTEALEALRSEKSRIMQDHKEGSSLQNQALQTLQERLH 353

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 354 EADATLKREQESYKQMQSEFA---------ARLNKMEVDRQNLAEAVTLAER-------K 397

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    ++  +    ++     L+     L     +        E++   L E    E L+
Sbjct: 398 YSEEKKKVDELQQQVKLHRASLESAKQELVDYKQKATRILQSKEKLINSLKEGSSFEGLE 457

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 458 SSTASSMELEELRHEKEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEAESAREQLQDLQD 517

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   +E
Sbjct: 518 QIAKQRTSK--QELETELERMKQEFRYME 544



 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 95/255 (37%), Gaps = 12/255 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSG 445
            E +       +   +++      +N +  +  R   ++A  + +R     +K + E   
Sbjct: 353 HEADATLKREQESYKQMQSEFAARLNKM--EVDRQNLAEAVTLAERKYSEEKKKVDELQQ 410

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             +  + +     Q+    +   + +++ K     SL+E +    L +  A   E  +  
Sbjct: 411 QVKLHRASLESAKQELVDYKQKATRILQSKEKLINSLKEGSSFEGLESSTASSMELEELR 470

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +      E+QKL   +     E +    +++ +        E L+ L  Q+        
Sbjct: 471 HEKEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEA---ESAREQLQDLQDQIAKQRTSKQ 527

Query: 566 TTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             E  +  ++Q ++     L++    L  + ++ E++I ++  +   +  +       E+
Sbjct: 528 ELETELERMKQEFRYMEEDLHRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNSSQ--SEL 585

Query: 625 HIQIHQIESQEAMIE 639
             ++HQ+   E +I+
Sbjct: 586 ESRLHQL--TETLIQ 598


>gi|328945455|gb|EGG39606.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis SK1087]
          Length = 641

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 541

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++ + +       +   +  +   ++  ++   L +R   L  Q E+++ QI+
Sbjct: 542 KAEQEALRE-ETEQTSPDKPAPANDYQLQ--KENQKEQRRLARRLEQLEAQIEDLDSQIS 598

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIE--SQEAMIE 639
           Q+       +       L E   QI Q+    +EAM+E
Sbjct: 599 QLQEAM---QATNDAGELMESQQQIDQLTTAQEEAMLE 633


>gi|296215244|ref|XP_002754058.1| PREDICTED: nesprin-2 [Callithrix jacchus]
          Length = 6820

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 86/280 (30%), Gaps = 20/280 (7%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+         +   L      L+   + +   ++  +  D    ++++LK C    + +
Sbjct: 1813 PELSELKKQYESISDLFNTKKSLLQDHFSKLLNDQCKSFNDWFGNIKMNLKECFESPETK 1872

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                   Q + D L    +    +         K    +         +     + +  +
Sbjct: 1873 GSVEQKLQKLSDFLTLEGRNSKIQQVDSVLKHVKKHLPKAHVKELSSWLVGQEFELEKME 1932

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                                +E    L  +    ++ + L  +L +   + K        
Sbjct: 1933 SICQA-------------RAKELEDYLEHLLRLQDDHRNLSKWLSNQEEKWKGMEESGEK 1979

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
              L       L ++ ++    A L ++  E    +  +   +A  L  R++ L RQ  EI
Sbjct: 1980 TEL---FCHALARKREQFESVAQLNNSLKEYGFTEEEEIIMEATCLMDRYQTLLRQLSEI 2036

Query: 599  EKQIAQVTAKGEA---EKTAILISILHEVHIQIHQIESQE 635
            E++  ++    +    +    +I  + E+   +  + S E
Sbjct: 2037 EEE-DKLPPMEDQSFNDLAHDVIHWIKEIKESLMVLNSSE 2075


>gi|228931077|ref|ZP_04094014.1| hypothetical protein bthur0010_57200 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228828529|gb|EEM74228.1| hypothetical protein bthur0010_57200 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 675

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 86/252 (34%), Gaps = 12/252 (4%)

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
            D  ++                 +  +        ++KLR  +   +++RLQ+L      
Sbjct: 353 QDNYYQDVNNLIDEIRLILERTYKETIMRDYQKEAEEKLRETFEANLQERLQKLNAFENK 412

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
           E+    +     +  +  +  S +L Q +  K   S    L E  L+L   +   +  + 
Sbjct: 413 ENQEMQQKLNAFSEKQQLELQSFKLKQEAEFKVYESD---LEERKLMLVSAHEEEL--KA 467

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE------RGFGELLKQLDR 555
             ++   +  + +   L        +++K  L  +    L +            LK L  
Sbjct: 468 ENDMEKEKSLHEKAYDLKLEANKLLIDKKNELLADFVGALEDIMNAASESQESQLKDLQA 527

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            + +  +     E      ++   + L L +    L ++   +E++  +      + +  
Sbjct: 528 YM-NQLIPEWREEIQAEHDKEMENRKLKLEEEKNRLEQEALILEQRKQEALEMKTSARER 586

Query: 616 ILISILHEVHIQ 627
            L++I+ E++ +
Sbjct: 587 ELLNIIDELNDR 598


>gi|190339288|gb|AAI62152.1| Myosin, heavy polypeptide 11, smooth muscle [Danio rerio]
          Length = 1974

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 81/293 (27%), Gaps = 23/293 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                 + +   E+  ++     +     E E        ++ ELE  L      +++++ 
Sbjct: 875  DIALKHTQLMDERNQLQEKLQAETELYAEAEEMRVRLASKKQELEEILHEMEARLEEEED 934

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    Q  + ++ +  +             +K    +       + ++  ++        
Sbjct: 935  RGAALQMEKKKMHEQIKDLEEHLEEEEDARQKLQLEKVTCDAKIKKLEDDILIMDDQNNK 994

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF-----------LFSDFVEQ 529
              +E  +L         + +    LA+    +  L KL +            L  +   +
Sbjct: 995  LQKERKILE------ERIADFSSNLAEEEEKSKNLTKLKNKHESMISELEVRLKKEEKTR 1048

Query: 530  KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----ALY 585
            +     +           E +  L  Q+ D     A  E  +       +          
Sbjct: 1049 QELDKAKRKLEAESNDLQEQIADLQAQIADLKAQLAKKEEELQAALARLEDETGQKNNAL 1108

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQEA 636
            K+ R L     ++++ +    A     +     L   L  +  ++       A
Sbjct: 1109 KKIRELEGHISDLQEDLESERAARNKAEKTKRDLGEELEALKSELEDTLDTTA 1161



 Score = 37.2 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 31/295 (10%), Positives = 89/295 (30%), Gaps = 19/295 (6%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
                     +   +KL + +        +   + +     + +  +E H+      + D 
Sbjct: 1315 VQDTQELLAEETRQKLQLSTKLRQIEDDRNALQEQLDEEAEAKRNVERHVSTLNIQLSDF 1374

Query: 419  KLRYY-------YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSS 470
            K +           +  + RLQ+  +   T+       + K  + +++ +   +  +   
Sbjct: 1375 KKKLEEMTGNVELLEEGKKRLQRDLEAANTQFEEKAAAYDKLEKTKNRLQQELEDTLMDL 1434

Query: 471  LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE----LQKLWSFLFSDF 526
              + +L      ++      L    +I  +   E      +  E       L   L    
Sbjct: 1435 DNQRQLVSNLEKKQKKFDQMLAEEKSISSKYADERDRAEAEAREKETKALSLARALEEAQ 1494

Query: 527  VEQKYFLPE--EIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
              ++ F      +   + +        G+ + +L++  R         +  + ++    Q
Sbjct: 1495 EAREEFERANKALRAEMEDLVSSKDDVGKNVHELEKSKRGLEAQVEEMKTQLEELEDELQ 1554

Query: 580  QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             A     R  +  +  +   ++  Q   +   EK   L+  + E+  ++     Q
Sbjct: 1555 AAEDAKLRLEVNMQALKAQFERDLQGRDEQGEEKKRQLVKQVRELETELEDERKQ 1609


>gi|72391424|ref|XP_846006.1| kinesin K39 [Trypanosoma brucei TREU927]
 gi|62176688|gb|AAX70789.1| kinesin K39, putative [Trypanosoma brucei]
 gi|70802542|gb|AAZ12447.1| kinesin K39, putative [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
          Length = 1803

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 96/320 (30%), Gaps = 40/320 (12%)

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER------AELEIHLK 409
           G+DP        K    +   +         ++E E                 EL I   
Sbjct: 437 GKDPTYVRELEEKLVLLEAEAQKRAADLHALEKEREKNIIREKMLYATEVEREELLIKAT 496

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK---NARHRDQKGPSQRL 466
                +++ K R  Y + +  RL+  + +   E     R  +      R R         
Sbjct: 497 ELERQVEESKRRAEYHEEMSQRLKDEYAQREQELLEKVRQHRAEIEGIRERKDAEMLSSQ 556

Query: 467 MQSSLVKGKLSKKPSLREAAL---------LLTLINHPAILQEQYQELADIRYDNNELQK 517
            Q S V  +L ++   RE AL         L   + +     E++ EL      N EL  
Sbjct: 557 QQLSRVMSELEQERHSREEALHILRERQEQLSAALCNSQQSSEKHTELQQ---QNEELSH 613

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV----- 572
               L  +   Q+  L +    RL      E+ + LD ++ +       T  +++     
Sbjct: 614 RMQKLLEECEAQQRILSDLEVFRLERNELEEIAQFLDLKLEETEHRHIKTINHLLTTIGM 673

Query: 573 --------------DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
                         +V     +    +   R    +  ++ +       K   +K  +L 
Sbjct: 674 HNLWQAELLTAVGTEVETQLTKCNQHHFDQRAAMEKNHKLFQMEQHQMTKKLEQKILMLE 733

Query: 619 SILHEVHIQIHQIESQEAMI 638
             + E   Q+   +  EA I
Sbjct: 734 KEIEEAKKQLDTTKQSEAAI 753



 Score = 37.2 bits (84), Expect = 8.4,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 95/308 (30%), Gaps = 47/308 (15%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--SQAIRDRL 432
             +          +  ++       E  E     +  I  I+++K        Q +   +
Sbjct: 504 ESKRRAEYHEEMSQRLKDEYAQREQELLEKVRQHRAEIEGIRERKDAEMLSSQQQLSRVM 563

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
            +L Q+  +         ++  +       SQ+  +      + +++ S R   LL    
Sbjct: 564 SELEQERHSREEALHILRERQEQLSAALCNSQQSSEKHTELQQQNEELSHRMQKLLEEC- 622

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK- 551
                 Q    +L   R + NEL+++  FL     E ++   + I+  L   G   L + 
Sbjct: 623 ---EAQQRILSDLEVFRLERNELEEIAQFLDLKLEETEHRHIKTINHLLTTIGMHNLWQA 679

Query: 552 --------QLDRQVRDAGLWSATTEANIVDVRQGYQQALA-----LYKRFRLLSRQKEEI 598
                   +++ Q+           A +    + +Q         L ++  +L ++ EE 
Sbjct: 680 ELLTAVGTEVETQLTKCNQHHFDQRAAMEKNHKLFQMEQHQMTKKLEQKILMLEKEIEEA 739

Query: 599 EKQI-------------------AQVTAKGEAEKTAILISILH--------EVHIQIHQI 631
           +KQ+                   A+   +   E        L         ++  Q+   
Sbjct: 740 KKQLDTTKQSEAAITNKARQAEDARAAVERNLETVEAERDELQQRLDATSNDLKSQLRNS 799

Query: 632 ESQEAMIE 639
           E   A +E
Sbjct: 800 EDARAAVE 807


>gi|14195008|sp|Q9JI55|PLEC_CRIGR RecName: Full=Plectin; Short=PCN; Short=PLTN; AltName: Full=300 kDa
            intermediate filament-associated protein; AltName:
            Full=IFAP300; AltName: Full=Plectin-1
 gi|7839650|gb|AAF70372.1| plectin [Cricetulus griseus]
          Length = 4473

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 84/237 (35%), Gaps = 23/237 (9%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1254 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEGEAALEKQRQLAEAHAQAKAQAE 1313

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    +  +   +           Q+   I+    ELQ L     ++   +   +    
Sbjct: 1314 LEAQELQRRMQEEVARREEAAVNAQQQKRSIQ---EELQHLRQSSEAEIQAKAQQVEAAE 1370

Query: 538  HQRLCERGFGELLK-QLDRQVR-------DAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              R+       +++ QL+   R       +     A  E      RQ  ++A  L ++ +
Sbjct: 1371 RSRMRIEEEIRVVRLQLETTERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQ 1430

Query: 590  LLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIHQIESQEA 636
              S++K + E ++A   +  A+   EK    +  L E+         ++ Q +++ A
Sbjct: 1431 DESQRKRQAEAELALRVKAQAEAAQEK-QRALQALEELRLQAEEAERRLRQAQAERA 1486



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2132 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2191

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2192 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2251

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2252 KAEAELLQQQKELAQEQA 2269



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/292 (11%), Positives = 85/292 (29%), Gaps = 13/292 (4%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                +   +   E+L  +         + E E          A  E   +      + + 
Sbjct: 1411 AEAQKRQAQEEAERLRRQVQDESQRKRQAEAELALRVKAQAEAAQEKQ-RALQALEELRL 1469

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                  + +R    +  ++         R  +   + +      +       ++ +    
Sbjct: 1470 QAEEAERRLRQAQAERARQVQVALETAQRSAEVELQSKRASFAEKTAQLERTLQEEHVTV 1529

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL----------FSDFVEQ 529
              LRE A         A    +  E    R+     + L   L           +    +
Sbjct: 1530 TQLREKAERRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQRSLAQADAE 1589

Query: 530  KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
            K     E   R   +   + ++Q +   ++        E          Q+ + L     
Sbjct: 1590 KQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETE 1649

Query: 590  LLSRQKEEIEKQIAQVTAKGEAE--KTAILISILHEVHIQIHQIESQEAMIE 639
               +Q++ +E+++A++  +  A   K   L + L +V  ++  + + +A  E
Sbjct: 1650 QGEQQRQLLEEELARLQREATAATHKRQELEAELAKVRAEMEVLLASKARAE 1701



 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2172 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2231

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2232 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2291

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2292 RTLEVERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2351

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2352 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2406

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2407 QEQILQETQALQKSFLSEKDSLLQRERFIE 2436



 Score = 38.3 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1133 RQLRYYRESADPLSSWLQDAKRRQEQIQAVPIPNSQAAREQLRQEKALLEEIERHGEKVE 1192

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1193 ECQKFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1249

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1250 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEGEAALEKQRQLAEAHA 1306

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1307 QAKAQAELEAQELQRRMQEEVARREEAAVNAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1366

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1367 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1399



 Score = 37.6 bits (85), Expect = 6.1,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 88/281 (31%), Gaps = 15/281 (5%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER-AELEIHLKNCINHIKDQKLRY 422
                + A        L        +E   R     ++   +L    +     ++ ++ R 
Sbjct: 2242 MQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQRTLEVERQRQ 2301

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                A  +RL+    +     +      ++  +  ++ G      + +  +     +   
Sbjct: 2302 LEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVTLVQTLE 2361

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR-- 540
             +              +   + +A++  +  +L++    L     E +    E+I Q   
Sbjct: 2362 IQRQ------QSDHDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQQEQILQETQ 2415

Query: 541  -LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI- 598
             L +    E    L R+       +   +    +V +  Q      ++ R + ++K+E+ 
Sbjct: 2416 ALQKSFLSEKDSLLQRERFIEQEKAKLEQLFQDEVAKAQQLREEQQRQQRQMEQEKQELV 2475

Query: 599  ----EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                E +  Q  A+    +    +  L     Q  ++ ++E
Sbjct: 2476 ASMEEARRRQCEAEEAVRRKQEELQHLELQRQQQEKLLAEE 2516


>gi|113461083|ref|YP_719151.1| replicative DNA helicase [Haemophilus somnus 129PT]
 gi|170717658|ref|YP_001784735.1| replicative DNA helicase [Haemophilus somnus 2336]
 gi|112823126|gb|ABI25215.1| primary replicative DNA helicase [Haemophilus somnus 129PT]
 gi|168825787|gb|ACA31158.1| replicative DNA helicase [Haemophilus somnus 2336]
          Length = 472

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 33/128 (25%), Gaps = 6/128 (4%)

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
            +       S R+      +  +       E A+L  ++           ++    +   
Sbjct: 2   TKATTGSNQSARIKDKKFEQTLIPPHSIEAEQAVLGGILLDNRYWDSVADQIIAEDFYTF 61

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATT 567
           E + ++  +   F +        + + L  +G  E       L +L      A       
Sbjct: 62  EHRIIFQEIALLFAQNTPVDLLVLDEVLKTKGKSEEVGGFAYLAELSNNTPSAANILTYA 121

Query: 568 EANIVDVR 575
           E       
Sbjct: 122 EIVREKAI 129


>gi|322387750|ref|ZP_08061359.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus infantis ATCC 700779]
 gi|321141617|gb|EFX37113.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus infantis ATCC 700779]
          Length = 633

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTVYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +      ++ +     +    A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KAELATSQE-EEASAYSQEKEASPVNDYQAQKESQKELRKLMRQIENLEAEIEELETQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A++   L + L ++  +      +EAM+E
Sbjct: 591 AFSEQMHTTNDADELMQLQAELDKISQR-----QEEAMLE 625


>gi|301772298|ref|XP_002921569.1| PREDICTED: rho-associated protein kinase 2-like [Ailuropoda
            melanoleuca]
          Length = 1493

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 99/286 (34%), Gaps = 35/286 (12%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 888  MSEKQLKQENNHLMEMKMSLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 947

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   +                 K  S++L +S   +    L K
Sbjct: 948  ELKEECEEKAKLCKELQQKKQDLQEERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 1007

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 1008 EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 1059

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 1060 NKLKDA--QEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1117

Query: 594  ---QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                    EK+  ++  + ++E+   L   + +   +++++++Q A
Sbjct: 1118 SDTDMRRKEKENRKLHMELKSER-EKLTQQMIKYQKELNEMQAQIA 1162


>gi|284053054|ref|ZP_06383264.1| hypothetical protein AplaP_16423 [Arthrospira platensis str.
           Paraca]
 gi|291566868|dbj|BAI89140.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 491

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 49/128 (38%), Gaps = 2/128 (1%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
           + L +    L    VE+     E I  +   +   + L +++  + +A +  +  E  + 
Sbjct: 83  DRLNQARKDLTQAQVEKHRVESELIQAQNELQAAVDYLNEINSSLNNAKVEVSEREQELE 142

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             +   +   +   + +    Q E  + +I +        + + +     E+  +I Q++
Sbjct: 143 RAQSRLENTESELHQLQNQLSQMEAAKTEI-EAEVDSIESQLSQVYQQKKELETEIDQLQ 201

Query: 633 -SQEAMIE 639
             ++ +IE
Sbjct: 202 VERQDLIE 209


>gi|304320856|ref|YP_003854499.1| TonB system biopolymer transport component [Parvularcula
           bermudensis HTCC2503]
 gi|303299758|gb|ADM09357.1| TonB system biopolymer transport component [Parvularcula
           bermudensis HTCC2503]
          Length = 459

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 9/96 (9%)

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEIEKQIAQVTAKGEA- 611
                           +    RQ  +Q +A + R R   ++    I +++A   A+ +  
Sbjct: 28  QESEISLNDVLREARESRQQARQESEQRIAEFLRERNRQQERLATIRREVAAAEAESDQI 87

Query: 612 -EKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
             +       + E+  ++ + + +      FG++ G
Sbjct: 88  EAQFRANDERIQELQSELERQQGE------FGELFG 117


>gi|281339437|gb|EFB15021.1| hypothetical protein PANDA_005451 [Ailuropoda melanoleuca]
          Length = 707

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/340 (10%), Positives = 101/340 (29%), Gaps = 31/340 (9%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           DG                   +   +     L   +D         +    +    +   
Sbjct: 212 DGSFDDPNTMVAKKYFHAQLQLEQLQEENFRLEAAKDDYRVHCEELEKQLIEFQHRN--- 268

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
            ++    E      +  D             + ++  + +      +R +++ L +  + 
Sbjct: 269 DELTNLAEETRALKDEIDVLRATSDKANKLESTVEIYRQKLQDLNDLRKQVKTLQETNMM 328

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPAI 497
                    ++  +    +   +   +            S R   L   +      H A+
Sbjct: 329 YMHNTVSLEEELKKANAARTQLETYKRQVQDLHNKLSSESKRADTLAFEMKRLEEKHEAL 388

Query: 498 LQEQYQELAD---IRYDNNELQ--KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           L+E+ + +     ++  N EL+  ++     +          E +   +    + E+  +
Sbjct: 389 LKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTDASATKSYENLAAEIMPVEYREVFIR 448

Query: 553 LDRQVRDAGLWSA-TTEANIVDVRQGYQQALA-----------LYKRFRLLSRQKEEIEK 600
           L  + +   L    T    I ++++  +Q                +R R L +Q E+++K
Sbjct: 449 LQHENKMLRLQQEGTENERIEELKEQLEQKHRKMNELETEQRLSKERIRELQQQIEDLQK 508

Query: 601 QIAQVTAKGE-------AEKTAILISILHEVHIQIHQIES 633
            + +  +K E        +K    +  L EV  ++ + + 
Sbjct: 509 SLQEQGSKSEGESSSKLKQKLEAHMEKLTEVQEELQKKQE 548


>gi|266622785|ref|ZP_06115720.1| putative RecF/RecN/SMC N domain protein [Clostridium hathewayi DSM
           13479]
 gi|288865461|gb|EFC97759.1| putative RecF/RecN/SMC N domain protein [Clostridium hathewayi DSM
           13479]
          Length = 1123

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 57/166 (34%), Gaps = 18/166 (10%)

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            +L  +     +  +    L+     N E  +L   L            EE+ +R+   G
Sbjct: 285 EILELMERAGELTDKA--ALSRDDLQNQE--RLKDGLDEQIA-DLTTQGEELLKRISSTG 339

Query: 546 FGEL---LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR--------- 593
           + +L   L+ L+  +                +     Q     +    +           
Sbjct: 340 YEDLKTRLESLNELMEHLSKSEVKWHQTAERLNAWIDQETTSNQTIWDIEEFEKNTIDGE 399

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + E ++K +A++  + E +  +   ++L ++  Q  Q++ + A ++
Sbjct: 400 KLERLKKSLAEMRKEAE-DLKSEASAVLRDLKRQERQLKEELAQLK 444


>gi|242240239|ref|YP_002988420.1| poly(A) polymerase I [Dickeya dadantii Ech703]
 gi|242132296|gb|ACS86598.1| poly(A) polymerase [Dickeya dadantii Ech703]
          Length = 449

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 101/355 (28%), Gaps = 38/355 (10%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF-IRCYGKTAFEKLIVESLP 380
           D D        +   L     + G R     +  G +              ++  V++  
Sbjct: 61  DFDITTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEVIEVATFRGHHEQHQEQQVKNAS 120

Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY------YSQAIRDRLQQ 434
             D       +N      ++    +  + +    I D  +R Y        Q I   L  
Sbjct: 121 QQDQNGMLLRDNIFGTIEEDAQRRDFSINSLYYSIADFTVRDYTNGVNDLRQGIIRLLGD 180

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT---- 490
              +Y  +     R  +  A+   +  P        L        P+      L      
Sbjct: 181 PETRYREDPVRMLRAVRFAAKLGMKISPETAEPIPRLSSLLHDIPPARLFEEALKLLQAG 240

Query: 491 -------LINHPAILQEQYQELADIRYDNNEL---QKLWSFLFS---DFVEQKYFLPEEI 537
                  L+    + Q  +  L+     N E    + L   L +            P  +
Sbjct: 241 YGYPTYQLLCEYQLFQPLFPLLSRDLTANGESTMERMLVQVLKNTDQRIQNDMRVNPAFL 300

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +      E  ++L ++   A   +      + DV     ++LA+ KR   L R   +
Sbjct: 301 FSAMLWYPLVEHAQKLTQESGLAYFEAFA--LAMNDVLDEQCRSLAIPKRITSLIRDIWQ 358

Query: 598 IEKQIAQVTAKGEAEKTAILISI--------LHEVHIQIHQIESQEAMIEGFGKM 644
           ++ ++++   K    +   L+          L  +  +I   +    + E +G+ 
Sbjct: 359 LQLRLSRRQGK----RAFKLMEHPKFRAAYDLLSLRAEIEHNQELLRLSEWWGEF 409


>gi|117553546|gb|ABK35293.1| RecN [Avibacterium paragallinarum]
          Length = 421

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 17/161 (10%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-IHQRLCERG---FGELLK 551
            +LQ Q +EL       NE   L          ++     + +   L E        LL 
Sbjct: 160 QLLQYQVEELDQFALQENEYADLEEEYHRLANSEELTNLSQSVLNTLSENDELNVDSLLY 219

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-------QKEEIEKQIAQ 604
           +  + + +        E  +  +++   Q        + LS        + +E+E+++ Q
Sbjct: 220 RTIQNLEELHSLDPHYEEALTMLQEALIQVQEASSEIQHLSANIEQDPYRLQEVEQRMGQ 279

Query: 605 VTAKGEA--EKTAILISILHEVHIQIHQI----ESQEAMIE 639
                     K   L+S+   +  ++ Q+    +S+EA+IE
Sbjct: 280 ALQLARKHNVKAEELVSLHQSLKQELEQLMAFADSEEALIE 320


>gi|149751386|ref|XP_001499938.1| PREDICTED: similar to progerin isoform 1 [Equus caballus]
          Length = 663

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQAAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|156740924|ref|YP_001431053.1| ATPase [Roseiflexus castenholzii DSM 13941]
 gi|156232252|gb|ABU57035.1| ATPase AAA-2 domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 871

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 10/146 (6%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           I   A L+ ++Q +        +   +   L   +             R+ +        
Sbjct: 325 IEKDAALERRFQPVMVDPPSVEDTISILRGLKERYETHHGV-------RITDAAIVAAAT 377

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE---KQIAQVTAK 608
             DR + D  L     +       +   +  +  +    L R+  ++E   + + +   K
Sbjct: 378 LSDRYISDRFLPDKAIDLIDEAAARLRMEITSDPQELDDLKRRIMQLEIEREALKKEKDK 437

Query: 609 GEAEKTAILISILHEVHIQIHQIESQ 634
              E+   L   L  +  Q   +E+Q
Sbjct: 438 ASKERLEKLEQELANLQEQRRAVEAQ 463



 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 79/206 (38%), Gaps = 9/206 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++K+I + +   R ++           +  +++    + +      + +AA++       
Sbjct: 321 YRKHIEKDAALERRFQPVMVDPPSVEDTISILRGLKERYETHHGVRITDAAIVAAATLSD 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLD 554
             + +++     I   +    +L   + S          +++ +R+ +     E LK+  
Sbjct: 381 RYISDRFLPDKAIDLIDEAAARLRMEITS-----DPQELDDLKRRIMQLEIEREALKKEK 435

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            +     L     E    ++++  +   A  +R R    + +++++QI Q   + E  + 
Sbjct: 436 DKASKERLEKLEQELA--NLQEQRRAVEAQLQREREQLTRVQQLKEQIDQTRVEIERAQR 493

Query: 615 AILISILHEVH-IQIHQIESQEAMIE 639
               +   E+   +++ +E Q A IE
Sbjct: 494 VYDYNKAAELQYGRLNTLERQLAEIE 519


>gi|110347443|ref|NP_009045.2| TATA element modulatory factor [Homo sapiens]
 gi|218511858|sp|P82094|TMF1_HUMAN RecName: Full=TATA element modulatory factor; Short=TMF; AltName:
           Full=Androgen receptor coactivator 160 kDa protein;
           AltName: Full=Androgen receptor-associated protein of
           160 kDa
 gi|109658742|gb|AAI17419.1| TATA element modulatory factor 1 [Homo sapiens]
 gi|116496953|gb|AAI26124.1| TATA element modulatory factor 1 [Homo sapiens]
 gi|119585872|gb|EAW65468.1| TATA element modulatory factor 1, isoform CRA_a [Homo sapiens]
 gi|119585873|gb|EAW65469.1| TATA element modulatory factor 1, isoform CRA_a [Homo sapiens]
 gi|168277462|dbj|BAG10709.1| TATA element modulatory factor [synthetic construct]
          Length = 1093

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 62/175 (35%), Gaps = 7/175 (4%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +   Q      KL+     +E  L    ++   + ++     A +     EL  L  
Sbjct: 613 GKEEVEKQHRENIKKLNSMVERQEKDLGRLQVDMDELEEKNRSIQAALDSAYKELTDLHK 672

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +  +        + + +  +   EL   L++   +A     T    + D+R   Q+
Sbjct: 673 A---NAAKDSEAQEAALSREMKAK--EELSAALEKAQEEARQQQETLAIQVGDLRLALQR 727

Query: 581 -ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              A  ++   L  +  E+++++ +   +   E +  + S    +  QI  +++ 
Sbjct: 728 TEQAAARKEDYLRHEIGELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 781


>gi|109016230|ref|XP_001108356.1| PREDICTED: cingulin-like [Macaca mulatta]
          Length = 1203

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 76/209 (36%), Gaps = 11/209 (5%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLT 490
            Q+ +         G    K    +D     + L +    K ++ ++  LRE  L  L  
Sbjct: 443 AQVMELQNKLKQVQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALKG 502

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
            +    +     +     +    + ++L   +     +      E   ++        L 
Sbjct: 503 ALKE-EVASRDQEVEHVRQQYQRDTEQLRRSMQDATQDHAVLEAE---RQKMSALVRGLQ 558

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY----KRFRLLSRQKEEIEKQIAQVT 606
           ++L+    + G W +  + N  D+R   Q+ L L     +    L  + E +++++ Q  
Sbjct: 559 RELEETSEETGHWQSMFQKNKEDLRATKQELLQLRMEKEEMEEELGEKIEVLQRELEQAR 618

Query: 607 -AKGEAEKTAILISILHEVHIQIHQIESQ 634
            + G+  +  +L   L +   ++ +++++
Sbjct: 619 ASAGDTRQVEVLKKELLQTQEELKELQAE 647



 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 72/218 (33%), Gaps = 7/218 (3%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
              I+   Q L        +          R +  +  ++   +S   + +  K    + +
Sbjct: 913  DEIQRLRQALQASQAERDTARLDKELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEKVS 972

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L   L      ++     +   R   +++ +L + L  +   ++    ++I      + 
Sbjct: 973  RLEAELDEEKNTVELLTDRVNRGR---DQVDQLRTELLQERSARQDLECDKISLERQNKD 1029

Query: 546  FGELLKQLDRQVRDA---GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                L   +   + +       +  +     ++   ++   L    R L R+ +E+  QI
Sbjct: 1030 LKTRLASSEGFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERKVKELSIQI 1089

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             +   +   ++   L   +  +  Q+ + E +   ++G
Sbjct: 1090 -EDERQHVNDQKDQLSLRVKALKRQVDEAEEEIERLDG 1126



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 83/226 (36%), Gaps = 23/226 (10%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + +  RLQ L Q+   +        ++     ++    +  +       +L      R 
Sbjct: 936  KELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEKVSRLEAELDEEKNTVELLTDRVNRG 995

Query: 485  A----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDFVEQKY 531
                  L   L+   +  Q+   +   +   N +L+ +L S           S    Q  
Sbjct: 996  RDQVDQLRTELLQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQ 1055

Query: 532  FLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             L E +     E+       ++L+R+V++  +       ++ D +        L  R + 
Sbjct: 1056 LLQERLQAEEREKTVLQSTNRKLERKVKELSIQIEDERQHVNDQKDQ------LSLRVKA 1109

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
            L RQ +E E++I ++   G  +K    +   HEV+ Q+  +I+S E
Sbjct: 1110 LKRQVDEAEEEIERLD--GLRKKAQRELEEQHEVNEQLQARIKSLE 1153


>gi|58037237|ref|NP_082021.1| coiled-coil domain-containing protein 57 [Mus musculus]
 gi|81892689|sp|Q6PHN1|CCD57_MOUSE RecName: Full=Coiled-coil domain-containing protein 57
 gi|33989766|gb|AAH56480.1| Coiled-coil domain containing 57 [Mus musculus]
 gi|123288579|emb|CAM27536.1| coiled-coil domain containing 57 [Mus musculus]
 gi|123289510|emb|CAM22544.1| coiled-coil domain containing 57 [Mus musculus]
          Length = 1016

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 73/215 (33%), Gaps = 7/215 (3%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            Q +++      Q          RY  +  + R ++   Q       ++    K+   RE
Sbjct: 50  LQRLQEDFVYNLQVLEERDRELERYDVEFTQARQREEAQQAEASELKIEVAKLKQDLTRE 109

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           A  +   + H   L  Q   L   R  +++  +L     +   EQ   L  E+ ++L E 
Sbjct: 110 ARRVGE-LQHQHQLMLQEHRLELERVHSDKNSEL-----AHQREQNERLEWELERKLKEL 163

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                L++ +  +              +         L    + +LL+++ + +    A+
Sbjct: 164 DGELALQRQELLLEFESKMQRREHEFQLRADDMSNVVLTHELKIKLLNKELQALRDAGAR 223

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                +  +   +     ++  +  +++  EA+ +
Sbjct: 224 AAESLQKAEAEHVELE-RKLQERARELQDLEAVKD 257


>gi|58802759|gb|AAW82480.1| TPR [Xenopus laevis]
          Length = 1997

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 90/260 (34%), Gaps = 17/260 (6%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R    +     ++  EL          ++    RY   Q   +  ++       +     
Sbjct: 365 RMLNEQHDKLQEQVTELRSQNTKISTQLEFASKRYEMLQDNVEGYRREITALQEKTQKLS 424

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
              +K  +  +      R     L   ++  +   RE  LL   ++   + QE+   +A+
Sbjct: 425 ATTQKQEQIINTLTHDLRAANEKLAVAEVRAENLKREKELLK--MSEVRLTQERESLVAE 482

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSA 565
            R  N  L  L   +       +  + +  + ++   E+   +  K+L+ ++    L   
Sbjct: 483 QRGQNLLLTNL-QTIQVTLERSETEIKQRYNNQIEKLEQELAQTKKKLEHEIEQRHLLGK 541

Query: 566 TTEANIVDVRQGYQQALALYKRFRLL----SRQKEEIEKQIAQVTAKGEAEKTAILISI- 620
             +  ++++++ Y+  L L+   + L     ++   +++Q+     +  +  +    +  
Sbjct: 542 NQDVQVLELKKQYEMELNLHNNTKELLKNSHKEISVLKQQLNSFELQLASRSSQQAANRD 601

Query: 621 -------LHEVHIQIHQIES 633
                  + E+  ++ Q E 
Sbjct: 602 KDVNIEDVEEIKTKLRQSEE 621



 Score = 38.3 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 71/205 (34%), Gaps = 11/205 (5%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNAR-HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           +L +L+  Y+          ++N R  +      + +   S +  +  ++    +  +  
Sbjct: 70  KLTELYNAYVETQDKLLMEKQENKRITKYLDEIVKEVEAKSPILKRQREEYERMQKTVAS 129

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                   ++E  +   +    N       S +     ++     +++ Q++       L
Sbjct: 130 LSAKLEQAMREIQRMQDETDKANK-----CSSVLERENQRLELQIKDLSQQI-----RVL 179

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           L +L+    +       + ANI    +   Q L  Y+    L +Q + +   + ++    
Sbjct: 180 LMELEEARGNFVQRDDVSSANISSSSEVITQHLVTYRNIEELQQQNQRLLVALRELGEAK 239

Query: 610 EAEKTAILISILHEVHIQIHQIESQ 634
           E E+     S + E+  ++    S+
Sbjct: 240 EREEQESTSSRVSELEKELENALSE 264


>gi|73955659|ref|XP_536636.2| PREDICTED: similar to myosin, heavy polypeptide 10, non-muscle
            isoform 1 [Canis familiaris]
          Length = 1976

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 876  EEMERKHQQLLEEKNILTEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 935

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 936  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 995

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 996  KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1049

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +        
Sbjct: 1050 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKVQLAKKE---EELQGALARGDDETLHK 1106

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1107 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1154



 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 83/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + R +L   ++     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1391 EEARKKLLKDVEALGQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQIASNLEKKQ 1450

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1451 KKFDQLLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALETKEEFERQ 1505

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1506 NKQLRADMEDLISSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1565

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1566 EVNMQAMKAQFERDLQTRDEQNEEKKRLLVKQVRELEAELEDERKQRALAVASKKKLEID 1625

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1626 LKDLEAQIEA 1635


>gi|73955665|ref|XP_860724.1| PREDICTED: similar to myosin, heavy polypeptide 10, non-muscle
            isoform 4 [Canis familiaris]
          Length = 1986

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 886  EEMERKHQQLLEEKNILTEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 945

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 946  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1005

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1006 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1059

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +        
Sbjct: 1060 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKVQLAKKE---EELQGALARGDDETLHK 1116

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1117 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1164



 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 83/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + R +L   ++     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1401 EEARKKLLKDVEALGQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQIASNLEKKQ 1460

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1461 KKFDQLLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALETKEEFERQ 1515

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1516 NKQLRADMEDLISSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1575

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1576 EVNMQAMKAQFERDLQTRDEQNEEKKRLLVKQVRELEAELEDERKQRALAVASKKKLEID 1635

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1636 LKDLEAQIEA 1645


>gi|66792856|ref|NP_001019707.1| coiled-coil alpha-helical rod protein 1 [Bos taurus]
 gi|61553660|gb|AAX46438.1| StAR-binding protein [Bos taurus]
          Length = 724

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/285 (10%), Positives = 89/285 (31%), Gaps = 27/285 (9%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ--- 433
           ++  L         + +     +               ++D+       +     LQ   
Sbjct: 349 KAQELEHRECVERLKGQVAELQERVETQCQEQVILQRSLQDKAAEVEVERMGAKALQMEL 408

Query: 434 ---QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR---EAAL 487
              Q  ++   + +       +         P   L     ++ +  ++   R   E  L
Sbjct: 409 SRTQEARRRRKQQAAPAEEQLRLVASAVSSCPPPPLTTDMSLELEQLREERNRLDAELQL 468

Query: 488 LLTLIN------------HPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLP 534
              +I                 L E  Q+L  +++     L  L   L +    Q+    
Sbjct: 469 SAHIIQQEVGRAREQGEAERQKLSEVAQQLEQELQRTQESLASLGLQLEAARQGQQESTA 528

Query: 535 EE--IHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           E   + + L ++       L +++           + +E  + + R+ + +A+   ++ +
Sbjct: 529 EAASLRKELTQQQEIYGQALQEKVAEVEGRLREQLSESERRLNEARREHTKAVVSLRQIQ 588

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             + +++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 589 RKATREKERNQELRRLQDEARKEEGQRLTQRLKELERDKNLMLAT 633


>gi|74220219|dbj|BAE31289.1| unnamed protein product [Mus musculus]
 gi|74225474|dbj|BAE31649.1| unnamed protein product [Mus musculus]
          Length = 729

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 79/269 (29%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD----QKLRYYYSQAIRDRLQ 433
           +      + K   +            LE         ++D      L+    Q +++RL 
Sbjct: 294 AKDSQLAVLKVRLQEADQVLSSRTEALEALRSEKSRIMQDHKEGSSLQNQALQTLQERLH 353

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 354 EADATLKREQESYKQMQSEFA---------ARLNKMEVDRQNLAEAVTLAER-------K 397

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    ++  +    ++     L+     L     +        E++   L E    E L+
Sbjct: 398 YSEEKKKVDELQQQVKLHRASLESAKQELVDYKQKATRILQSKEKLINSLKEGSSFEGLE 457

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 458 SSTASSMELEELRHEKEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEAESAREQLQDLQD 517

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   +E
Sbjct: 518 QIAKQRTSK--QELETELERMKQEFRYME 544



 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 95/255 (37%), Gaps = 12/255 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSG 445
            E +       +   +++      +N +  +  R   ++A  + +R     +K + E   
Sbjct: 353 HEADATLKREQESYKQMQSEFAARLNKM--EVDRQNLAEAVTLAERKYSEEKKKVDELQQ 410

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             +  + +     Q+    +   + +++ K     SL+E +    L +  A   E  +  
Sbjct: 411 QVKLHRASLESAKQELVDYKQKATRILQSKEKLINSLKEGSSFEGLESSTASSMELEELR 470

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +      E+QKL   +     E +    +++ +        E L+ L  Q+        
Sbjct: 471 HEKEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEA---ESAREQLQDLQDQIAKQRTSKQ 527

Query: 566 TTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             E  +  ++Q ++     L++    L  + ++ E++I ++  +   +  +       E+
Sbjct: 528 ELETELERMKQEFRYMEEDLHRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNSSQ--SEL 585

Query: 625 HIQIHQIESQEAMIE 639
             ++HQ+   E +I+
Sbjct: 586 ESRLHQL--TETLIQ 598


>gi|296193128|ref|XP_002744374.1| PREDICTED: transcription elongation regulator 1-like isoform 1
           [Callithrix jacchus]
          Length = 1098

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 631 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 690

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 691 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 738

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 739 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 787

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 788 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 847

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 848 AKNLDSDKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 900


>gi|294678686|ref|YP_003579301.1| hypothetical protein RCAP_rcc03170 [Rhodobacter capsulatus SB 1003]
 gi|294477506|gb|ADE86894.1| conserved hypothetical protein [Rhodobacter capsulatus SB 1003]
          Length = 859

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 59/178 (33%), Gaps = 23/178 (12%)

Query: 477 SKKPSLREAALLLTLINHP----------AILQEQYQELADIRYD----NNELQKLWSFL 522
           S++ + R A LL  ++N P            L  Q + L          +   + LW  L
Sbjct: 432 SRENAPRTAQLLRAILNRPAGLFPAPQMAEALHAQIERLEGASLTPEARDEVAKVLWD-L 490

Query: 523 FSDFVEQKYFLP--------EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
                +              E + + +      + + +L  ++++A        A     
Sbjct: 491 AKLLEDGGLADALAAMQQAQERLSEAIRNGASKDEIAKLMAELKEATDRYLQMLAERATD 550

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           ++   Q        R+   Q +++  +I ++  +G+  +   L+  L  +   +   +
Sbjct: 551 QEEGPQFGQKQDSQRITGDQIQQMMAEIQRLMEEGKMAEAQELLDQLARLMENMKVTQ 608


>gi|289706413|ref|ZP_06502771.1| peptide chain release factor 2 [Micrococcus luteus SK58]
 gi|289556908|gb|EFD50241.1| peptide chain release factor 2 [Micrococcus luteus SK58]
          Length = 373

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 2/83 (2%)

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           + +L++Q     LW    EA    V           KR   L  + E++E  +     + 
Sbjct: 33  IAELEQQASAPDLWDDPEEA--QKVTSKLSHRQTDLKRITSLESRIEDLETMVELAAEED 90

Query: 610 EAEKTAILISILHEVHIQIHQIE 632
           E          L  +   + ++E
Sbjct: 91  EPSLLEDANQELTSIRKALEELE 113


>gi|167758742|ref|ZP_02430869.1| hypothetical protein CLOSCI_01084 [Clostridium scindens ATCC
          35704]
 gi|167663482|gb|EDS07612.1| hypothetical protein CLOSCI_01084 [Clostridium scindens ATCC
          35704]
          Length = 79

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)

Query: 40 WACCPFHDEKTPSFHCNDSKGFY 62
           ACCPFHD++ PS      K FY
Sbjct: 50 MACCPFHDDRNPSLKV--DKRFY 70


>gi|146306434|ref|YP_001186899.1| electron transport complex protein RnfC [Pseudomonas mendocina ymp]
 gi|145574635|gb|ABP84167.1| electron transport complex, RnfABCDGE type, C subunit [Pseudomonas
           mendocina ymp]
          Length = 944

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 61/215 (28%), Gaps = 12/215 (5%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +    +L       +       R   + A+       +     +S   G  + K +  E
Sbjct: 517 LKKAEKQLAAHDTPELQTQVAELRAAAEAAQKALADAQAAAPAPASKPAGDEALKKAKIE 576

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           AA+L   +     L+      A       E+ +L   L +          +         
Sbjct: 577 AAMLKAQLRKLEKLE------APDDDQQTEIARLRQQLEAAEKALADLESQAPAPAAKPA 630

Query: 545 GFGELL-KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ-- 601
           G   L   ++D  +  A L       N  D      +   L ++     +   ++E Q  
Sbjct: 631 GDEALKKAKIDAAMLKAQLRKLEKIENTDD--DQQAEIARLRQQLEAAEKALADLESQTP 688

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                  G+       I     +  Q+ ++E  EA
Sbjct: 689 APAAKPAGDEALKKAKIEAAM-LKAQLRKLEKLEA 722


>gi|116241293|sp|Q9TU23|CE290_BOVIN RecName: Full=Centrosomal protein of 290 kDa; Short=Cep290; AltName:
            Full=Nephrocystin-6
          Length = 1468

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/316 (11%), Positives = 97/316 (30%), Gaps = 22/316 (6%)

Query: 346  NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
                    + G D D   +        + +  S   +++ ++ E  N+       +    
Sbjct: 1132 KDAYSRPSTSGIDSDDHYQREQ-ELQRENLKLSSENIELKFQLEQANKDLPRLKNQVRDL 1190

Query: 406  IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQ 464
              +   +   K +  R         R  +   +         +  +K  R  +Q K  S 
Sbjct: 1191 KEMCEFLKKEKAEVERKLGRVRGSGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASG 1250

Query: 465  RLMQSSLVKGKLSKKPSLREAALLL------TLINHPAILQEQYQELADIRYDNNELQKL 518
             L    +   ++  +    E   L         +++ +  +   + +A+      EL+K+
Sbjct: 1251 ILTSEKMANIEMENEKLKAELEKLKVHLGRQLSMHYESKAKGTEKIVAENERLRKELKKI 1310

Query: 519  WSFLFSDFVEQKYFLPEEIHQRLC---------ERGFGELLKQLD--RQVRDAGLWSATT 567
               +     E      + + + L          E+   EL+ +++  +         +  
Sbjct: 1311 --EILKHVPEGDE-TEQGLQRELRVLRLANSQLEKEKEELIHRIEISKDQNGPDSTISDP 1367

Query: 568  EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            +  +  ++    Q        + L  + ++++K++         E   +  +   EV   
Sbjct: 1368 DHLMEKIKDLETQLRTSDMEKQHLKEEIQKLKKELENFDPSFFEEIEDLKYNYKEEVKKN 1427

Query: 628  IHQIESQEAMIEGFGK 643
            I   E  + + E FG 
Sbjct: 1428 ILLEEKLKKLSEQFGV 1443


>gi|291405461|ref|XP_002718960.1| PREDICTED: myosin 18A [Oryctolagus cuniculus]
          Length = 2038

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 39/349 (11%), Positives = 90/349 (25%), Gaps = 31/349 (8%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    D          K        L     +   L  +  D   F +      
Sbjct: 1460 RRFDSELSQAHDEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 1519

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1520 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1579

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ +     E+ L   
Sbjct: 1580 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLRDKRELESKLTAL 1638

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1639 SDQVSRRDLESEKRLRKDLKRTKALLADAQVMLDHLKNSAPSKREIAQLKNQLEESEFT- 1697

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1698 ----CAAAVKARKAMEVEIEDLHLQIDDIAKTKTALEEQLSRLQREKNEIQNRLEEDQED 1753

Query: 609  GE-----------------------AEKTAILISILHEVHIQIHQIESQ 634
                                       +         E+  ++  ++SQ
Sbjct: 1754 MNELMKKHKAAVAQASRDLAQMNDLQAQLEEANKEKQELQEKLQALQSQ 1802



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1778 LQAQLEEANKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFER 1834

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1835 TQVKRLEGLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1894


>gi|256221749|ref|NP_001157775.1| plectin isoform 1d [Rattus norvegicus]
          Length = 4512

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 23/237 (9%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1293 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1352

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    +  +   +        +  Q+   I+    ELQ L     ++   +   +    
Sbjct: 1353 LEARELQRRMQEEVTRREEAAVDAQQQKRSIQ---EELQHLRQSSEAEIQAKAQQVEAAE 1409

Query: 538  HQRLCERGFGELLK-QLDRQVR-------DAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              R+       +++ QL+   R       +     A  E      RQ  ++A  L ++ +
Sbjct: 1410 RSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQ 1469

Query: 590  LLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIHQIESQEA 636
              S++K + E ++A   +  A+   EK    +  L E+         ++ Q E++ A
Sbjct: 1470 DESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLRQAEAERA 1525



 Score = 40.6 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2211 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2270

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2271 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2330

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2331 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2390

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2391 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2445

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2446 QEQILQETQALQKSFLSEKDSLLQRERFIE 2475



 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2171 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2230

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2231 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2290

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2291 KAEAELLQQQKELAQEQA 2308



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1622 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1681

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1682 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1740


>gi|227891249|ref|ZP_04009054.1| replicative DNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227866827|gb|EEJ74248.1| replicative DNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 458

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 11/158 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            L  +    E A+L  +  +   L +  + +    +     Q L+  +     + +    
Sbjct: 4   NLPPQNIEAEQAVLGAIFLNTDTLADAMEYVEADDFYRRAHQILFQAMIDLNNDGEAIDV 63

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   L        L  +      A L ++   A       GY   +   K   +L R 
Sbjct: 64  LTVQNYLTTN---NQLDDVGGVAYIAELATSVPTA----ANAGYYAKIVEEK--SMLRRL 114

Query: 595 KEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQ 630
                  I Q     +            + +V  + ++
Sbjct: 115 ISTATNIITQANNGDDDVPSLLDSAERQIMDVSERRNR 152


>gi|40849892|gb|AAR95658.1| plectin 4 [Rattus norvegicus]
 gi|40849894|gb|AAR95659.1| plectin 5 [Rattus norvegicus]
 gi|40849902|gb|AAR95663.1| plectin 9 [Rattus norvegicus]
          Length = 4451

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 23/237 (9%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1232 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1291

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    +  +   +        +  Q+   I+    ELQ L     ++   +   +    
Sbjct: 1292 LEARELQRRMQEEVTRREEAAVDAQQQKRSIQ---EELQHLRQSSEAEIQAKAQQVEAAE 1348

Query: 538  HQRLCERGFGELLK-QLDRQVR-------DAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              R+       +++ QL+   R       +     A  E      RQ  ++A  L ++ +
Sbjct: 1349 RSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQ 1408

Query: 590  LLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIHQIESQEA 636
              S++K + E ++A   +  A+   EK    +  L E+         ++ Q E++ A
Sbjct: 1409 DESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLRQAEAERA 1464



 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2150 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2209

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2210 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2269

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2270 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2329

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2330 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2384

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2385 QEQILQETQALQKSFLSEKDSLLQRERFIE 2414



 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2110 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2169

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2170 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2229

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2230 KAEAELLQQQKELAQEQA 2247



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1561 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1620

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1621 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1679


>gi|73986066|ref|XP_541929.2| PREDICTED: similar to Homer, neuronal immediate early gene, 3
           [Canis familiaris]
          Length = 360

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/213 (9%), Positives = 61/213 (28%), Gaps = 15/213 (7%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             RL +   +   E +        +         +       L + + +  P   E   L
Sbjct: 112 AARLAREKSQDGGELTSPALALAAHQVPPSPLVSANGPGDEKLFRSQSADVPGPAERERL 171

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +++  ++ + Q++        ++  + L   L         +  +   QR       +
Sbjct: 172 KKMLSEGSVGEVQWEA-EFFALQDSNNK-LAGALREANAAAAQWRQQLEAQRAEAERLRQ 229

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            + +L+ Q   A   S + +       +  +  +          ++ + ++ Q       
Sbjct: 230 RVAELEAQAAVAEPPSVSEKEGPGQSLEQLEALVQTK------DQEIQTLKSQTGATREA 283

Query: 609 GEAEKTAILISILH-------EVHIQIHQIESQ 634
            +A +       +        E+  Q+   E  
Sbjct: 284 LDATEREEAQQKVQDLETRNAELEHQLRATERS 316


>gi|326913626|ref|XP_003203137.1| PREDICTED: oral-facial-digital syndrome 1 protein-like [Meleagris
           gallopavo]
          Length = 879

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 82/281 (29%), Gaps = 13/281 (4%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     A E        L D+   R  E       +     +   +     I D   R  
Sbjct: 271 KQQEIEAKEVYAQRQSLLKDIEVMRTREAELKQRIESFEITQKLQEEKNKTIDDALRRRE 330

Query: 424 Y-SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              + I +   Q  +  + ++    +       ++  +   +   ++ L++ +     S 
Sbjct: 331 VAVKNIEETYDQKLKTELLKYQLELKEEYIARTNKVTEDEKKNKEKAMLLREEAVAVNSK 390

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           +E  L   +     +  +     A +   N + Q L   L     +      E++  ++ 
Sbjct: 391 KE-ELKQAVSRTKELELDLESVKAQVLLVNKQNQLLTEKLKE-VSDYPLLKEEKLELQVQ 448

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEAN----------IVDVRQGYQQALALYKRFRLLS 592
            +   + L +   + +      +   A           +   R+        +K+F    
Sbjct: 449 NKLLRQQLDETRTENQHLRDKLSQPSAEHLACQAELRKVEHSRRLVMDEFESHKQFSEKQ 508

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            Q E     + +            L   + ++ +Q+ Q ++
Sbjct: 509 LQSEVERSALLKAQLLDSEATVRKLNVQVEDLKLQLKQTQA 549


>gi|326669593|ref|XP_003199047.1| PREDICTED: cingulin-like 1 [Danio rerio]
          Length = 1307

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 92/295 (31%), Gaps = 32/295 (10%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               I  Y +    ++      L +   + E    +  T  E               +D+ 
Sbjct: 973  QEQIDMYKEKNRREMAELQKQLREGGLELEKSRLTAKTLQEELAHVQEDLRQCQRDRDEA 1032

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            L+    + +  ++ +L  +  ++     +  +              L +       L  +
Sbjct: 1033 LQT--VKDLEHKVFELEVETESKAHSNDKTRQVKVLEDRLSAVQMELEEERQSGELLMDR 1090

Query: 480  PSLREAALLLT---LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                   L      L+   A  Q+   +   +   N +L+   ++L       K  L  +
Sbjct: 1091 IDRGREQLEQMRNELMQERASRQDVECDKISLERQNKDLKSRIAYLEGSHKPSKDGLVSQ 1150

Query: 537  IHQRLCE------------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
            +  R+ E                   ++L+R+V++  +       ++ D +        L
Sbjct: 1151 LETRIQELEERLEGEERDRANLQLANRRLERKVKEMMMQVDEEHHSLQDQKDQ------L 1204

Query: 585  YKRFRLLSRQKEEIEKQIAQVTA---------KGEAEKTAILISILHEVHIQIHQ 630
              R + L RQ +E E++I ++           + + E    L S L  +  ++ +
Sbjct: 1205 NLRLKALKRQMDEAEEEIDRLEHSKKKLQRDLEEQQEANEQLQSQLKTLRTEMRR 1259


>gi|299744414|ref|XP_002910789.1| hypothetical protein CC1G_14767 [Coprinopsis cinerea okayama7#130]
 gi|298406115|gb|EFI27295.1| hypothetical protein CC1G_14767 [Coprinopsis cinerea okayama7#130]
          Length = 671

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 98/266 (36%), Gaps = 23/266 (8%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            +       D  A L+ +L+   + I+         Q I  RL    ++ I   +   + 
Sbjct: 394 VKELEQERYDSMARLDTNLRETNDRIESALKLDQAQQEILKRLADRERETIDALTEAAKV 453

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
            +     + +      + +    + +L    S RE   L  ++    I+  + +E+  +R
Sbjct: 454 EEMLVLAKKEIARLSGVCK--AKEAELIPLRSAREDH-LSKMLAMQDIVNARDREITGLR 510

Query: 510 ------YDN-NELQKLWSFLFSDFVEQK---------YFLPEEIHQRLCERGFGELLKQL 553
                 +++  +L+ L +      VE++             E   Q L ER        L
Sbjct: 511 TELKSLFESKEDLRALLAEAKKSIVEKEQELSQARSLNPEIESRMQELKERFSSFETAIL 570

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           +R   ++ + +   E    D+R   +   AL  + R  S Q +    ++ + +AK  +  
Sbjct: 571 ERSALESKVAALQRECGERDIR--IKGLQALLDQERKSSEQAKSASDRLTEASAKERSTL 628

Query: 614 TAILISILHEVHIQIHQIESQEAMIE 639
                + L ++  ++  ++ + A+++
Sbjct: 629 AERHRTELQDLRREL--LKEKNALMD 652


>gi|290990772|ref|XP_002678010.1| predicted protein [Naegleria gruberi]
 gi|284091620|gb|EFC45266.1| predicted protein [Naegleria gruberi]
          Length = 1114

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 2/116 (1%)

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           + +   E+K    +       E     +                     I  +    Q+ 
Sbjct: 279 VVTSIKEEKPTRRDSFKSETIEEEKETVDNDWINIKSTINSSLTKYSTRISKLLDEEQKK 338

Query: 582 LALYK--RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +   K  +F LL  + + +E+ + + T + E EK   +   L E+  +I +I+  E
Sbjct: 339 IDEKKENQFSLLQEKIQSLEQLLDEYTEQEEFEKAEQIEQELTELRTKIEEIQVTE 394


>gi|256221664|ref|NP_001157770.1| plectin isoform 1e [Rattus norvegicus]
          Length = 4522

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 23/237 (9%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1303 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1362

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    +  +   +        +  Q+   I+    ELQ L     ++   +   +    
Sbjct: 1363 LEARELQRRMQEEVTRREEAAVDAQQQKRSIQ---EELQHLRQSSEAEIQAKAQQVEAAE 1419

Query: 538  HQRLCERGFGELLK-QLDRQVR-------DAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              R+       +++ QL+   R       +     A  E      RQ  ++A  L ++ +
Sbjct: 1420 RSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQ 1479

Query: 590  LLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIHQIESQEA 636
              S++K + E ++A   +  A+   EK    +  L E+         ++ Q E++ A
Sbjct: 1480 DESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLRQAEAERA 1535



 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2221 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2280

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2281 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2340

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2341 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2400

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2401 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2455

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2456 QEQILQETQALQKSFLSEKDSLLQRERFIE 2485



 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2181 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2240

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2241 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2300

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2301 KAEAELLQQQKELAQEQA 2318



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1632 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1691

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1692 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1750


>gi|256221662|ref|NP_001157769.1| plectin isoform 1f [Rattus norvegicus]
          Length = 4535

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 23/237 (9%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1316 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1375

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    +  +   +        +  Q+   I+    ELQ L     ++   +   +    
Sbjct: 1376 LEARELQRRMQEEVTRREEAAVDAQQQKRSIQ---EELQHLRQSSEAEIQAKAQQVEAAE 1432

Query: 538  HQRLCERGFGELLK-QLDRQVR-------DAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              R+       +++ QL+   R       +     A  E      RQ  ++A  L ++ +
Sbjct: 1433 RSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQ 1492

Query: 590  LLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIHQIESQEA 636
              S++K + E ++A   +  A+   EK    +  L E+         ++ Q E++ A
Sbjct: 1493 DESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLRQAEAERA 1548



 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2234 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2293

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2294 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2353

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2354 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2413

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2414 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2468

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2469 QEQILQETQALQKSFLSEKDSLLQRERFIE 2498



 Score = 40.3 bits (92), Expect = 0.94,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2194 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2253

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2254 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2313

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2314 KAEAELLQQQKELAQEQA 2331



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1645 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1704

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1705 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1763


>gi|148921597|gb|AAI46795.1| Discs, large homolog 5 (Drosophila) [Homo sapiens]
 gi|168273038|dbj|BAG10358.1| discs large homolog 5 [synthetic construct]
          Length = 1919

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/331 (9%), Positives = 87/331 (26%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +L       +     
Sbjct: 303 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNADLSRLEQLGEENQRLLKQTEMLTQQRDTA 362

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E                      
Sbjct: 363 IQLQHQCALSLRRFEAIH--HELNKATAQNKDLQWEMELLQSELTELRTTQVKTAKESEK 420

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
               +D      Y   + +R Q + +  K  TE        K +   +         ++ 
Sbjct: 421 YREERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAANEEMEALRQ 479

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                 +    + +E  +L                         + + L   L     E 
Sbjct: 480 IKDTVTMDAGRANKEVEILR-----------------------KQCKALCQELKEALQEA 516

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 517 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 573

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+   +   +  +   L++ 
Sbjct: 574 DVSRELKELKEQME--SQLEKEARFRQLMAH 602


>gi|40849898|gb|AAR95661.1| plectin 7 [Rattus norvegicus]
          Length = 4513

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 23/237 (9%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1294 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1353

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    +  +   +        +  Q+   I+    ELQ L     ++   +   +    
Sbjct: 1354 LEARELQRRMQEEVTRREEAAVDAQQQKRSIQ---EELQHLRQSSEAEIQAKAQQVEAAE 1410

Query: 538  HQRLCERGFGELLK-QLDRQVR-------DAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              R+       +++ QL+   R       +     A  E      RQ  ++A  L ++ +
Sbjct: 1411 RSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQ 1470

Query: 590  LLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIHQIESQEA 636
              S++K + E ++A   +  A+   EK    +  L E+         ++ Q E++ A
Sbjct: 1471 DESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLRQAEAERA 1526



 Score = 40.6 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2212 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2271

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2272 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2331

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2332 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2391

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2392 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2446

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2447 QEQILQETQALQKSFLSEKDSLLQRERFIE 2476



 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2172 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2231

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2232 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2291

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2292 KAEAELLQQQKELAQEQA 2309



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1623 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1682

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1683 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1741


>gi|118350688|ref|XP_001008623.1| SMC family, C-terminal domain containing protein [Tetrahymena
           thermophila]
 gi|89290390|gb|EAR88378.1| SMC family, C-terminal domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 1238

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 108/315 (34%), Gaps = 27/315 (8%)

Query: 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382
           G+       + A  +     +        L     DP   ++   +      +       
Sbjct: 665 GNFIVTSNQHIAKQIAFNQNVRMRIKCVTLEGDIIDPQGTLQGGYQDNRNLTLTRYANYR 724

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-RYYYSQAIRDRLQQLFQKYIT 441
           ++  ++E    +     E        +N  N +KD    + +  +   ++L+ L  + I 
Sbjct: 725 NIQDEKEEIIYNKGQLQESINYLKKEENYYNGLKDDLTNKKFRFEKFAEQLRNLSGRGIQ 784

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
           E         ++      +      +Q    K +   +    E A L    +   + +++
Sbjct: 785 EQQDKLEREIQDDIEMLAR------VQDQDKKTQEKLEELNNERANLSKSKDTKEVWKKK 838

Query: 502 YQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
            Q+L  +I   + ELQ L + +    V  ++   + I  +           ++ ++ ++ 
Sbjct: 839 IQKLKQEIEESDKELQNLNNHIADCEVNIEHNKKDLIKSK----------DRVIQENKNI 888

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILI 618
                  E+N  D+ Q         K  + L RQK+E+E +I ++  K     EK   L 
Sbjct: 889 EDQKKKLESNDQDLNQK-------RKENQELKRQKDELELEIQKLQGKRVELEEKEKTLK 941

Query: 619 SILHEVHIQIHQIES 633
               E+  ++ +IE 
Sbjct: 942 QRKDEIESEVKKIEE 956


>gi|47230171|emb|CAG10585.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 980

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 84/264 (31%), Gaps = 31/264 (11%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
           +  + +        +        +      ++   ++   + + D+ L+         R+
Sbjct: 379 ESEMNNKNKEMQALRSSLNEAMVSKERLEQQVMEFMEASQHSVPDESLQA--------RV 430

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-KLSKKPSLREAALLLTL 491
           Q L  + ++  +   +   + +     +    ++ +S+  K   +    SL E  L+   
Sbjct: 431 QALHNENVSLKAEIQKLQAQISDQAASQLALDQIQKSAREKEENMRTVESLLEKGLI--- 487

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
                   E   +  +++    E + L   + +                  E    EL  
Sbjct: 488 --------EVANKEEELKTAREENEALRQEVEAVKRRSGEKEAS------SESTLKELES 533

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           +++ +         + +    +     + A  L ++  +L  + E++ ++         A
Sbjct: 534 KIEEKDGTLKSMEESLQRAKDNSSAREKMAQTLEQQLAVLKAEMEQLREEKVSDELSSSA 593

Query: 612 EKTAILISILHEVHIQIHQIESQE 635
            +    +  L E+  Q+  ++ QE
Sbjct: 594 AQ----LQELQELQAQL-TLKDQE 612


>gi|71746574|ref|XP_822342.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70832010|gb|EAN77514.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 1719

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 84/270 (31%), Gaps = 32/270 (11%)

Query: 365  CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                +     + +S PL +   ++            R                   R   
Sbjct: 1024 KERLSETNDQLKKSSPLHEEEKQKVLSRYEEENMKARVARLEEAV---------TQRDEA 1074

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             +A  +R++QL ++         +   + ++    +  S     S+     L  K   RE
Sbjct: 1075 LRAKSERIRQLEKELRAA-HREVKAALEESKKSSSRLHSDSTQTSAEELRSLMTKARERE 1133

Query: 485  AALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
               L    N   + +++ + L   +   +++L+K                 +++  R  E
Sbjct: 1134 KEKLK---NESKLYRKENESLKERLSETDDQLKK--------SSSLDEEEKQKVLSRYEE 1182

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                  + +L+  V                +R   ++   L K  R   R+ +   +   
Sbjct: 1183 EDVKPRVARLEEAVTQRD----------EALRAKDERIRQLEKELRAAHREAKSALEDGR 1232

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIES 633
            + +++  ++ T      L  +  ++ ++E+
Sbjct: 1233 RNSSRLHSDSTQTSAEELRSLKTKMDEMEN 1262


>gi|332231119|ref|XP_003264745.1| PREDICTED: myosin-9 isoform 2 [Nomascus leucogenys]
          Length = 1922

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 86/265 (32%), Gaps = 28/265 (10%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EKL ++     +     E E        ++ ELE    +    +++++ R  + Q  + 
Sbjct: 880  AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQTEKK 939

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++QQ  Q+   +        +K    +       + ++   +  +       +E  LL  
Sbjct: 940  KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEEQIILEDQNCKLAKEKKLLE- 998

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +                      E    +L 
Sbjct: 999  -----DRIAEFTTNLTEEEEKSKSLAKLKNK--------------------HEAMITDLE 1033

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L R+ +       T      D      Q   L  +   L  Q  + E+++    A+ E
Sbjct: 1034 ERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVE 1093

Query: 611  AEKTAILIS--ILHEVHIQIHQIES 633
             E     ++   + E+  QI +++ 
Sbjct: 1094 EEAAQKNMALKKIRELESQISELQE 1118



 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 70/228 (30%), Gaps = 15/228 (6%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            + ++ +    + +R+   +L  +            K     +D +       ++     K
Sbjct: 1579 QSEEKKKQLVRQVREMEAELEDERKQRSMAVAARKKLEMDLKDLEAHIDSANKNRDEAIK 1638

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +K   +    +  L         + + LA  + +  +L+ + + +     E       
Sbjct: 1639 QLRKLQAQMKDCMREL---DDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERA 1695

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +   +   EL  ++        L           + Q  ++         L++ + 
Sbjct: 1696 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELINDRL 1752

Query: 596  EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIESQ 634
            ++   QI Q+      E++           L     E+ +++ ++E  
Sbjct: 1753 KKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKVKLQEMEGT 1800


>gi|315613214|ref|ZP_07888124.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis ATCC 49296]
 gi|315314776|gb|EFU62818.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis ATCC 49296]
          Length = 633

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 63/160 (39%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSESGSTLYLGDYDYYVDK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+ +  +  + +    ++ +  +    ++  ++A  L ++   L  + EE+E Q  
Sbjct: 532 KAEIEVSQTEEASMSNQAKEASPSN-DYQAQKESQKEARKLMRQIESLEAEIEELETQSQ 590

Query: 604 QVTAK----GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++ K     +AEK   L + L ++  +      +EAM+E
Sbjct: 591 AISEKMLETNDAEKLMELQAELDKISHR-----QEEAMLE 625


>gi|296804808|ref|XP_002843252.1| structural maintenance of chromosomes protein 4 [Arthroderma otae CBS
            113480]
 gi|238845854|gb|EEQ35516.1| structural maintenance of chromosomes protein 4 [Arthroderma otae CBS
            113480]
          Length = 1427

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 79/233 (33%), Gaps = 22/233 (9%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + +   L+          +   +   +    +     +QR ++    + K S     REA
Sbjct: 935  RELESELKTTKDSIPKVETAIQKLQLEIDSSKRNLVDTQRRVKELSEEHKPSSTDEKREA 994

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV---EQKYFLPEEIHQR-- 540
            +L  T++   A+ +E     +++     E+Q L   +          +    + + ++  
Sbjct: 995  SLEKTIM---ALEKEVENLRSEMAGVEEEIQTLQDKIMEVGGVRLRGQKAKVDGLKEQVL 1051

Query: 541  -LCERGFGELLKQLDRQVRDAGLWSATTEAN-------------IVDVRQGYQQALALYK 586
             L E      + +   +        +  +A                + R   +    + +
Sbjct: 1052 LLTEEVSNAEVSKSKNEKLHIKHEKSRADAESELEHVREDIERLDEEARSQAKAVSGIKQ 1111

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +        +  ++++  + ++ + +   +  +   E+ ++    ESQ+A++E
Sbjct: 1112 KTEEAEEALQTKQEELTALKSELDEKTAELNETRAVEIEMRNKLEESQKALLE 1164


>gi|237843481|ref|XP_002371038.1| hypothetical protein TGME49_012890 [Toxoplasma gondii ME49]
 gi|211968702|gb|EEB03898.1| hypothetical protein TGME49_012890 [Toxoplasma gondii ME49]
          Length = 1213

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/207 (12%), Positives = 63/207 (30%), Gaps = 6/207 (2%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            ++++LR    +   +R+  L +   +         +K    +  +   QRL ++   + +
Sbjct: 879  ENRRLRASIERLETERMSLLERTEKSRVEFLALVAEKGRSDKQARDALQRLAEAESQQER 938

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLP 534
             ++   L    L   L      ++    EL          ++ +S L S           
Sbjct: 939  STQALKLHAQDLEERLAKKEEQVRSLRGELEAAIVRAEAAEREFSRLRSSLSLASGPADF 998

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                          +    +                     +  +      +R + LSR+
Sbjct: 999  AAGFPAFSSEEASTVAASEEHSKHAKEAQLQLVLLLAECAEESLR---MSAQREKQLSRE 1055

Query: 595  KEEIEKQIAQVTAKGEA--EKTAILIS 619
              E+E+Q+ +     +   E+   L++
Sbjct: 1056 VTELERQLDRALQTMDEASEQAEALLA 1082


>gi|169668112|gb|ACA64454.1| DnaG [Campylobacter fetus subsp. venerealis NCTC 10354]
          Length = 406

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 47 DEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS 84
          DE T S   +   G+   F    +GD ++F   +  C 
Sbjct: 30 DEHTASASIDPKNGYIKDFGSGFRGDVIAFYKEVKSCD 67


>gi|167555176|ref|NP_001107893.1| p90 autoantigen [Danio rerio]
 gi|160773423|gb|AAI55118.1| Zgc:174160 protein [Danio rerio]
          Length = 896

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 79/253 (31%), Gaps = 8/253 (3%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
            +++      +        + + I  +++        + +   + ++   Y  + S    
Sbjct: 582 ISKSFPTMHTEPSGSASHSIDSLIEKLQNGVELQEKVKDV--HMSEIIDVYEQKLSALAS 639

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ-ELAD 507
              +     + K  +       + + +  +  +  EA  L +L+      +E  Q EL D
Sbjct: 640 KESRLQDLLEAKALALSQADRLIAQYRCQRAQAEAEARKLASLLKDTERRKEDLQAELND 699

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
              +   L+     L       +     + HQ L    + +LL + D+         A  
Sbjct: 700 QLLEVERLKSDSQQLLQH--NGRLQAVADQHQGLKGT-YNQLLSRYDKSEGTLKDLQAAH 756

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA--QVTAKGEAEKTAILISILHEVH 625
            +         +    L  +      +  E E+QI   +     +      L + L    
Sbjct: 757 ISLTQQAEGLRKTNEGLRLQQERTLAELAEKEQQIKGLKADVLEKDSNITGLQNELRRQE 816

Query: 626 IQIHQIESQEAMI 638
            QI ++E   +++
Sbjct: 817 EQIKEMEENISIL 829


>gi|195953047|ref|YP_002121337.1| ATPase AAA-2 domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932659|gb|ACG57359.1| ATPase AAA-2 domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 982

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVR----QGYQQALALYK-----RFRLLSRQ 594
           +     L+ L+ Q+ +A L     +   + ++    +  +Q +         +   L ++
Sbjct: 542 QEIERKLRALEEQIINANLSGDYEKEAELKIQKINLEKQKQDIINKLDMVDMKINQLKKK 601

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE+E+QI +   KG+ EK A L   +     +I  +ES+ A
Sbjct: 602 LEELEQQIIKFAEKGDYEKEAELKIEMVNTEKEIKALESKRA 643



 Score = 37.6 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 38/100 (38%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           ++ +      +K   R V    L     +A      +    ++++    + + R+   +E
Sbjct: 493 KIEDDAIDGAVKLTHRYVTFRKLPDKAIDALDQACARKKLASVSVPPELQEIERKLRALE 552

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +QI      G+ EK A L      +  Q   I ++  M++
Sbjct: 553 EQIINANLSGDYEKEAELKIQKINLEKQKQDIINKLDMVD 592


>gi|111380638|gb|ABH09696.1| RAD50-like protein [Penicillium marneffei]
          Length = 1208

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 47/438 (10%), Positives = 124/438 (28%), Gaps = 46/438 (10%)

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309
                 + +     + +    +    + +   DV           +        +     
Sbjct: 534 CLKKIRDAIDDDPTEYLDILQTRQNHMDQTRKDVEQFAGMHGYFNMCLDALDQKKMCRTC 593

Query: 310 LWKLSPRIVL----------------CFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
           +        +                  D D       Y+   +V        R+    +
Sbjct: 594 MRPFKNETEMRTFKNRLEGLIKKNFSSSDEDLKQAEEDYENARMVNTDYDTWLRLTETAI 653

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              E  +   +   +   +KL      + +   K+        T      ++  +K+  +
Sbjct: 654 PELEKNEEQFQGQKEEILKKLESHDTTVDERAEKKREIESLSRTVTSIVRIDGEIKSLRS 713

Query: 414 HIKDQKLRY------YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
            I +              + I++ +  + +K         +   +  + RD    ++  +
Sbjct: 714 QIAEVLSEQPQGDFSRVLEDIQNDIAAIGEKSRAIKLTISKLSSEKDQSRDDLNKAELAL 773

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           +        +     ++  LL  +  +     +Q + +     D ++L+           
Sbjct: 774 RDVQGSLANASHELEKKTGLLARVEEYKKSNAKQRESIEKADRDIDQLEP------EIAK 827

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVR-----DAGLWSATTEANIVDVRQGYQQAL 582
            Q             ER   + L +L  +V      +  + S         + +  ++  
Sbjct: 828 AQAKLDDISRRAEAKERELQQALTRLSDRVNQLNLANDEIKSYIDRGGPEQLNKSRKELE 887

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAK-----------GEAEKTAILISILHEVHIQIHQI 631
            + +  + L  Q+ E  ++I +++A+            +         +L EV  +I Q+
Sbjct: 888 NIQQEIKKLEEQQSETTREINKISAQLKDSDNTRRQYSDNISYRQSCRLLEEVQREIQQL 947

Query: 632 ESQEAMIE--GFGKMSGR 647
           E Q A I+   F + S R
Sbjct: 948 EEQNAEIDRSRFKEESER 965


>gi|95089461|ref|NP_004738.3| disks large homolog 5 [Homo sapiens]
 gi|158939323|sp|Q8TDM6|DLG5_HUMAN RecName: Full=Disks large homolog 5; AltName: Full=Discs large
           protein P-dlg; AltName: Full=Placenta and prostate DLG
 gi|122889291|emb|CAI12104.2| discs, large homolog 5 (Drosophila) [Homo sapiens]
 gi|123231924|emb|CAI17324.2| discs, large homolog 5 (Drosophila) [Homo sapiens]
          Length = 1919

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/331 (9%), Positives = 87/331 (26%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +L       +     
Sbjct: 303 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNADLSRLEQLGEENQRLLKQTEMLTQQRDTA 362

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E                      
Sbjct: 363 IQLQHQCALSLRRFEAIH--HELNKATAQNKDLQWEMELLQSELTELRTTQVKTAKESEK 420

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
               +D      Y   + +R Q + +  K  TE        K +   +         ++ 
Sbjct: 421 YREERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAANEEMEALRQ 479

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                 +    + +E  +L                         + + L   L     E 
Sbjct: 480 IKDTVTMDAGRANKEVEILR-----------------------KQCKALCQELKEALQEA 516

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 517 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 573

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+   +   +  +   L++ 
Sbjct: 574 DVSRELKELKEQME--SQLEKEARFRQLMAH 602


>gi|91791295|ref|YP_552245.1| hypothetical protein Bpro_5493 [Polaromonas sp. JS666]
 gi|91701176|gb|ABE47347.1| conserved hypothetical protein [Polaromonas sp. JS666]
          Length = 371

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 43 CPFHDEKTPSFHCN--DSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          CP H+     F     D  G ++C  C   GD +S L    G S++E+ + +
Sbjct: 49 CPLHEGLKGKFRFENKDGNGNWHCAVCG-HGDGMSLLMKATGKSYVEAAKWV 99


>gi|50288973|ref|XP_446916.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526225|emb|CAG59849.1| unnamed protein product [Candida glabrata]
          Length = 1219

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 87/220 (39%), Gaps = 18/220 (8%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           ++RLQ L +    +                ++  +Q   +   ++ KL++    R     
Sbjct: 161 KERLQLLEEVVGAKSFEVKLKASMKQMDETEQKRAQISAEMEELESKLNEMEKER----- 215

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             L  + ++  E+ +++      + ELQ + S + S   +    L       L       
Sbjct: 216 KELEKYNSL--ERDRKVLRYTLHDRELQDIISQIESLDGDYNDTLGSSKKYILELEKREN 273

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           ++K+++ ++++  L  +      VD+ Q         +R   +  Q ++I+++I Q   +
Sbjct: 274 MIKEVNEEIKN--LQKSLKLKATVDLEQAKAILEESLERSEAIKLQLKDIKEKIKQNKEQ 331

Query: 609 GEAEKTA-ILISILHEVHI--------QIHQIESQEAMIE 639
            + ++    LI+ + +           +  Q++S+E +I+
Sbjct: 332 HDNDRKNLKLITEIIDSKKSKRRKISPRFDQLQSEEKLIK 371


>gi|328790595|ref|XP_393334.4| PREDICTED: myosin heavy chain, muscle isoform 1 [Apis mellifera]
          Length = 2171

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/261 (10%), Positives = 81/261 (31%), Gaps = 17/261 (6%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1795 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1854

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    + +  +   + E           A+  E 
Sbjct: 1855 NKANAEAQKNIKRYQQQLKDVQTALEEEQRARDEARELLGISER-------RANALQNEL 1907

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYF-----LPEEIHQRLCERGFGELLKQLDRQ 556
             +    +   +   ++    L     +               ++L E     L   LD  
Sbjct: 1908 EESRTLLEQADRGRRQAEQELADCHEQLNELGAQNASISAAKRKL-EAELQTLHSDLDEL 1966

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
            + +A       +  +VD  +   +  A     +   + ++ +E QI ++  + +  +   
Sbjct: 1967 LNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQVRLDEAEANA 2026

Query: 617  L---ISILHEVHIQIHQIESQ 634
            L      + ++  ++ ++E++
Sbjct: 2027 LKGGKKAIQKLEQRVRELENE 2047



 Score = 40.6 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 68/221 (30%), Gaps = 13/221 (5%)

Query: 428  IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP--SQRLMQSSLVKGKLSKKPSLREA 485
            I +R     Q  + E         +  R  +Q+     ++L +       +S      EA
Sbjct: 1895 ISERRANALQNELEESRTLLEQADRGRRQAEQELADCHEQLNELGAQNASISAAKRKLEA 1954

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L     +   +L E        +    +  +L   L     +      E++ + L  + 
Sbjct: 1955 ELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADEL--RAEQDHAQTQEKLRKALETQI 2012

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
                ++  + +           +     VR+   +     +R     +   + E++I ++
Sbjct: 2013 KELQVRLDEAEANALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKSERRIKEL 2072

Query: 606  TAKGEAEK---------TAILISILHEVHIQIHQIESQEAM 637
            + + + ++            L   +     QI + E   A+
Sbjct: 2073 SFQADEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL 2113



 Score = 38.3 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 66/223 (29%), Gaps = 12/223 (5%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + + D ++ L  +            K   R   +K   Q  ++ +    +  +   LR  
Sbjct: 1725 KNLADEVKDLLDQIGEGGRNIHEIEKARKRLEAEKDELQAALEEAEAALEQEENKVLRSQ 1784

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
              L  +     I +   ++  +        Q+    + +    +     E +  +     
Sbjct: 1785 LELSQV--RQEIDRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEA 1842

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK--------EE 597
                L+        A   +           +  Q AL   +R R  +R+           
Sbjct: 1843 DINELEIALDHANKANAEAQKNIKRYQQQLKDVQTALEEEQRARDEARELLGISERRANA 1902

Query: 598  IEKQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQEAMI 638
            ++ ++ +     E            L + H Q++++ +Q A I
Sbjct: 1903 LQNELEESRTLLEQADRGRRQAEQELADCHEQLNELGAQNASI 1945


>gi|256221671|ref|NP_001157771.1| plectin isoform 1hij [Rattus norvegicus]
 gi|256221739|ref|NP_001157774.1| plectin isoform 1hij [Rattus norvegicus]
 gi|256221753|ref|NP_001157777.1| plectin isoform 1hij [Rattus norvegicus]
          Length = 4387

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 23/237 (9%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1168 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1227

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    +  +   +        +  Q+   I+    ELQ L     ++   +   +    
Sbjct: 1228 LEARELQRRMQEEVTRREEAAVDAQQQKRSIQ---EELQHLRQSSEAEIQAKAQQVEAAE 1284

Query: 538  HQRLCERGFGELLK-QLDRQVR-------DAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              R+       +++ QL+   R       +     A  E      RQ  ++A  L ++ +
Sbjct: 1285 RSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQ 1344

Query: 590  LLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIHQIESQEA 636
              S++K + E ++A   +  A+   EK    +  L E+         ++ Q E++ A
Sbjct: 1345 DESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLRQAEAERA 1400



 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2086 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2145

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2146 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2205

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2206 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2265

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2266 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2320

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2321 QEQILQETQALQKSFLSEKDSLLQRERFIE 2350



 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2046 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2105

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2106 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2165

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2166 KAEAELLQQQKELAQEQA 2183



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1497 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1556

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1557 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1615


>gi|114578193|ref|XP_001155853.1| PREDICTED: dynactin 1 isoform 1 [Pan troglodytes]
 gi|114578195|ref|XP_001155914.1| PREDICTED: dynactin 1 isoform 2 [Pan troglodytes]
 gi|114578197|ref|XP_001155972.1| PREDICTED: dynactin 1 isoform 3 [Pan troglodytes]
 gi|114578199|ref|XP_001156028.1| PREDICTED: dynactin 1 isoform 4 [Pan troglodytes]
 gi|114578201|ref|XP_001156139.1| PREDICTED: dynactin 1 isoform 6 [Pan troglodytes]
          Length = 1009

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 102/331 (30%), Gaps = 15/331 (4%)

Query: 330 AAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRE 389
              +  DL              L ++    +             L  E         ++E
Sbjct: 1   MQEQQADLQRRLKEARKEAKEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQE 60

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT-EHSGYGR 448
            E       +   +LEI          D     Y  + + ++  +L    +         
Sbjct: 61  VEALKERVDELTTDLEILKAEIEEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSSSE 120

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL--QEQYQELA 506
             +     +  +  +Q L      + +L ++ S  E+ +        A L  +E  + L 
Sbjct: 121 KQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVEMLT 180

Query: 507 DIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
           D   +  E +++L   +       +     + + R  E    E L     +VR+A     
Sbjct: 181 DRNLNLEEKVRELRETVGDLEAMNEMNDELQENARETELELREQLDMAGARVREAQKRVE 240

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE------KTAILIS 619
             +  + D +Q  ++   L    + ++R+    ++   +   +   E      K A   +
Sbjct: 241 AAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQEASVERQQQPPPETFDFKIKFAETKA 300

Query: 620 ILHEVHIQIHQIESQEA-----MIEGFGKMS 645
               + +++ Q+E  +A     ++  F   S
Sbjct: 301 HAKAIEMELRQMEVAQANRHMSLLTAFMPDS 331


>gi|40849890|gb|AAR95657.1| plectin 3 [Rattus norvegicus]
          Length = 4523

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 23/237 (9%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1304 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1363

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    +  +   +        +  Q+   I+    ELQ L     ++   +   +    
Sbjct: 1364 LEARELQRRMQEEVTRREEAAVDAQQQKRSIQ---EELQHLRQSSEAEIQAKAQQVEAAE 1420

Query: 538  HQRLCERGFGELLK-QLDRQVR-------DAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              R+       +++ QL+   R       +     A  E      RQ  ++A  L ++ +
Sbjct: 1421 RSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQ 1480

Query: 590  LLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIHQIESQEA 636
              S++K + E ++A   +  A+   EK    +  L E+         ++ Q E++ A
Sbjct: 1481 DESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLRQAEAERA 1536



 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2222 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2281

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2282 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2341

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2342 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2401

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2402 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2456

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2457 QEQILQETQALQKSFLSEKDSLLQRERFIE 2486



 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2182 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2241

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2242 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2301

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2302 KAEAELLQQQKELAQEQA 2319



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1633 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1692

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1693 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1751


>gi|40849888|gb|AAR95656.1| plectin 2 [Rattus norvegicus]
          Length = 4536

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 23/237 (9%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1317 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1376

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    +  +   +        +  Q+   I+    ELQ L     ++   +   +    
Sbjct: 1377 LEARELQRRMQEEVTRREEAAVDAQQQKRSIQ---EELQHLRQSSEAEIQAKAQQVEAAE 1433

Query: 538  HQRLCERGFGELLK-QLDRQVR-------DAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              R+       +++ QL+   R       +     A  E      RQ  ++A  L ++ +
Sbjct: 1434 RSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQ 1493

Query: 590  LLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVH-------IQIHQIESQEA 636
              S++K + E ++A   +  A+   EK    +  L E+         ++ Q E++ A
Sbjct: 1494 DESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAERRLRQAEAERA 1549



 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2235 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2294

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2295 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2354

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2355 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2414

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2415 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2469

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2470 QEQILQETQALQKSFLSEKDSLLQRERFIE 2499



 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2195 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2254

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2255 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2314

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2315 KAEAELLQQQKELAQEQA 2332



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1646 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1705

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1706 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1764


>gi|110639496|ref|YP_679705.1| heat shock protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110282177|gb|ABG60363.1| heat shock protein with various ATPase domains [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 871

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 81/228 (35%), Gaps = 21/228 (9%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKK-----NARHRDQKGPSQRLMQSSLVKGKLSK 478
           Y     +RL+ + ++ I        +  +      A   +    +  L++ +L +G+L  
Sbjct: 249 YKGEFEERLKSVIKEVIDSDGEIVLFIDEIHTLIGAGGGEGAMDAANLLKPALARGELHA 308

Query: 479 --KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
               +L+E       I     L+ ++Q +     +  +   +   +   +          
Sbjct: 309 IGATTLKEYQ---KYIEKDKALERRFQAVIVDEPNTQDAISILRGIKEKYEVHHGI---- 361

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
              R+ +      ++   R + D  L     +       +   +  ++ +    + R+  
Sbjct: 362 ---RIQDDAIIAAVELSQRYISDRYLPDKAIDLMDEASAKLRIELDSMPQELDEILRRIM 418

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI----ESQEAMIEG 640
           ++E +   +  +   EK  IL   L E++ Q  QI    + ++ +I+G
Sbjct: 419 QLEIEREAIRRENNKEKETILSRELAELNEQKSQIMAKWQEEKRVIDG 466


>gi|326668207|ref|XP_690827.4| PREDICTED: cytospin-B [Danio rerio]
          Length = 1011

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 74/227 (32%), Gaps = 26/227 (11%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             R+ +L Q+   +        +K    + Q   S R ++    + + + K    E  LL
Sbjct: 425 ASRMAELEQRLAEQVESSRFEREKLVDIQQQLTGSLRALEKENQEAQTAVKSLREEEGLL 484

Query: 489 LT------LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
                   L    A+ + + Q LA      +           +   QK    + +     
Sbjct: 485 QGHLESEKLARDEAVRKTEEQRLAMEALRVDNASMKAQV---EVERQKVAELKAVQSASD 541

Query: 543 ERGFGELL-------KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--------R 587
                 LL        +L+    +        EA+   + +  ++    +K        +
Sbjct: 542 NTELQSLLKVAHEDRDKLEMTCTELRQELQQVEADRQQLLEKVEKQEQDHKANTNSLEEK 601

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILI--SILHEVHIQIHQIE 632
                 Q +++++ I ++  + E ++   L     + ++  QI ++E
Sbjct: 602 SIDAENQIKDLKETIFELEDQVEQQRAVRLHTNQTILDLENQIKKLE 648



 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 70/226 (30%), Gaps = 21/226 (9%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            ++L +      TE         +      +        + + +K   S   +    +LL
Sbjct: 490 SEKLARDEAVRKTEEQRLAMEALRVDNASMKAQVEVERQKVAELKAVQSASDNTELQSLL 549

Query: 489 LTLINHPAILQ----EQYQELADIRYDNNELQKLWSFLF----SDFVEQKYFLPEEIHQR 540
                    L+    E  QEL  +     + Q+L   +                + I   
Sbjct: 550 KVAHEDRDKLEMTCTELRQELQQVE---ADRQQLLEKVEKQEQDHKANTNSLEEKSIDAE 606

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA----LALYKRFRLLSRQKE 596
              +   E + +L+ QV         T   I+D+    ++       L K+ +++++Q +
Sbjct: 607 NQIKDLKETIFELEDQVEQQRAVRLHTNQTILDLENQIKKLEDNKTELEKQIKVVNKQMK 666

Query: 597 EIEKQIAQVTAKGEA------EKTAILISILHEVHIQIHQIESQEA 636
           +  ++  +  A  +       +        L  +  ++ + +   A
Sbjct: 667 DETEEWRRFQADLQTAVVVANDIKVEAQQELRTLRRRLQEEQEHSA 712


>gi|195432817|ref|XP_002064413.1| GK20155 [Drosophila willistoni]
 gi|194160498|gb|EDW75399.1| GK20155 [Drosophila willistoni]
          Length = 2737

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/284 (8%), Positives = 86/284 (30%), Gaps = 12/284 (4%)

Query: 365  CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK-NCINHIKD--QKLR 421
                     L        D +   + +         +  +E   +   ++ +KD  + LR
Sbjct: 1164 DQRNEQLADLQQTLQSKADEIESVQKQFEEKAKVSNQVNVEHEQRLQLVHQLKDDLEVLR 1223

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                ++ + R    F     ++                +  +    +    + +   +  
Sbjct: 1224 NQSLKSTQQRDDANFAVERQQNEIRRLEQHNTDTLTQLEQANAEKERLEQERKESEAQVV 1283

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF--LFSDFVEQKYFLPEEIHQ 539
             R+  +      +  + + + + +A+    + +L+ L     L     E        + +
Sbjct: 1284 QRDEQIAKL---NNDLKESELRIIAEKTESDQQLKILRHEMDLVQQKWELSLQTKSAMTE 1340

Query: 540  RLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             +        +  + +    ++               ++   Q   L +  +    QK  
Sbjct: 1341 EIESLTTKLKQQSELVVNGEKELEKLQLEITKEQEKTKELELQMAKLEEEKKAFEEQKGR 1400

Query: 598  IEKQIAQVTA--KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++ Q+ +     +   +++ +L   L +  ++  +++ + + +E
Sbjct: 1401 LQAQLGKNKEQIEKNHDQSQLLRQELSKEQMENERLQQETSRLE 1444


>gi|154490198|ref|ZP_02030459.1| hypothetical protein PARMER_00430 [Parabacteroides merdae ATCC
           43184]
 gi|154089090|gb|EDN88134.1| hypothetical protein PARMER_00430 [Parabacteroides merdae ATCC
           43184]
          Length = 862

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/213 (9%), Positives = 70/213 (32%), Gaps = 12/213 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++        +  +  +++    K +   K  +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVMVDEPNELDAISILRGLKEKYENHHKVRIKDDAIIAAVQLST 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S                +          +   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAARLRLQIDSVPESLDEVSRRIKQLEIEREAIKRENDKGKL 436

Query: 556 QVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +  +  +     E      + Q  ++ +   ++ ++     E ++ +  +   +G+  K 
Sbjct: 437 EQLNKEIADLKDEETKQKAQWQSEKEQINKIQQNKI---DIENLKFEADKAEREGDYGKV 493

Query: 615 AILI--------SILHEVHIQIHQIESQEAMIE 639
           A +           + EV  ++  ++   AMI+
Sbjct: 494 AEIRYGKIKQKEEEIREVQEKLKTMQGASAMIK 526


>gi|222478962|ref|YP_002565199.1| chromosome segregation protein SMC [Halorubrum lacusprofundi ATCC
           49239]
 gi|222451864|gb|ACM56129.1| chromosome segregation protein SMC [Halorubrum lacusprofundi ATCC
           49239]
          Length = 1193

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 515 LQKLWSFLFSDFVEQKYFLPE--EIHQRLCER-----GFGELLKQLDRQVRDAGLWSATT 567
           L++L + +     E++    E  E+   + +         E ++ L+  V  A    A  
Sbjct: 695 LERLATDISEREDERQALQAEVDELEDDIDDARDRKADAAERVRSLEADVERAEDELADA 754

Query: 568 EANIVDVRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           E  I +++   +   A  +               L+ + +E++ +I ++  +    K   
Sbjct: 755 EDRIDELKAELEDMEAERESVDAEMTELDDEIDDLNTEIDELDGEIEEIETELADSKIPE 814

Query: 617 LISILHEVHIQIHQIESQEAMIEG 640
           L     E+  +I  +E + + ++G
Sbjct: 815 LSERADEIRGEISDLEDRMSSLDG 838



 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 16/226 (7%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  R      + D L+          +      +      ++        +  + + K  
Sbjct: 706 EDERQALQAEV-DELEDDIDDARDRKADAAERVRSLEADVERAEDELADAEDRIDELKAE 764

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            +    E   +       A + E   E+ D+  + +EL      + ++  + K     E 
Sbjct: 765 LEDMEAERESV------DAEMTELDDEIDDLNTEIDELDGEIEEIETELADSKIPELSER 818

Query: 538 HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
              +        + +  LD +  +  L    TE  + D+    + A     R        
Sbjct: 819 ADEIRGEISDLEDRMSSLDGRRNELELEKGYTEDAVDDLHDTVETAQN---RKAEAEEAI 875

Query: 596 EEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEAMIE 639
            + E  I +     EA  E  A L + L E+      +   EA+ E
Sbjct: 876 ADHEVTIDEKEETLEAKRESIAELEAELTELKADREDLR--EAITE 919


>gi|332523178|ref|ZP_08399430.1| hypothetical protein STRPO_0004 [Streptococcus porcinus str.
          Jelinkova 176]
 gi|332314442|gb|EGJ27427.1| hypothetical protein STRPO_0004 [Streptococcus porcinus str.
          Jelinkova 176]
          Length = 362

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 22/91 (24%)

Query: 8  IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61
          I+ +     I ++              +   +          P HD    SF        
Sbjct: 4  IERMKQKA-ILDVAES-----------LGYSFKRLSGQVYEHPEHD----SFRIFADTNT 47

Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
          +  FS  ++GD + F+  + G SF +++  L
Sbjct: 48 FKWFSRDIQGDVIDFVQLVTGVSFKKALSYL 78


>gi|332263926|ref|XP_003281001.1| PREDICTED: 5-azacytidine-induced protein 1, partial [Nomascus
           leucogenys]
          Length = 895

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 80/263 (30%), Gaps = 17/263 (6%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLR----YYYSQAIRDRLQQLFQKYITEHS 444
            +           A ++ HL      I+D+K+           ++   Q+  ++      
Sbjct: 513 LSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQV 572

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK--PSLREAALLLTLINHPAILQEQY 502
            +     ++ RH       +     +  +        P   E  +   +  H   ++   
Sbjct: 573 QHELVRLRSPRHGVPGLAHRPGSAGTAPRTGPDSDALPPGLEPEIQKLIARHKQEVRRLK 632

Query: 503 QELADIRYDNNELQK---LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
                    ++E      L      +  EQ     E + Q+  ER      + L+++   
Sbjct: 633 SLHEAELLQSDERASQRCLRQA--EELREQLEREKEALGQQERERARQRFQQHLEQEQWA 690

Query: 560 AGLWSATTEANIVDVRQGY-QQALALYKRFRLLSRQKEE----IEKQIAQVTAKGEAEKT 614
                    + + + R+   QQA         L +Q EE    + + +     KG  E+ 
Sbjct: 691 LQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRTLKAEFEKGREEQE 750

Query: 615 AILISILHEVHIQIH-QIESQEA 636
                 L  +  Q+  + ++ EA
Sbjct: 751 RRHQMELKALKQQLELERQAWEA 773


>gi|313668650|ref|YP_004048934.1| replicative DNA helicase [Neisseria lactamica ST-640]
 gi|313006112|emb|CBN87573.1| putative replicative DNA helicase [Neisseria lactamica 020-06]
          Length = 470

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 12/167 (7%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            L       E ++L  L+            ++   +  +E + ++  +     E +    
Sbjct: 18  SLPPHSMEAEQSVLGGLLLENPAWDRIADVVSGEDFYRHEHRLIFRSVAKLINESRPADV 77

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L         ++L+       L S           + Y + +    R R + RQ
Sbjct: 78  ITVQEDLQRN------EELEAAGGFEYLISLAQNTPSAANIRRYAEIV----RERSIMRQ 127

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
             E+  +IA+     +      L+        QI   ES     +GF
Sbjct: 128 LAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 172


>gi|296805489|ref|XP_002843569.1| DUF1720 domain-containing protein [Arthroderma otae CBS 113480]
 gi|238844871|gb|EEQ34533.1| DUF1720 domain-containing protein [Arthroderma otae CBS 113480]
          Length = 1455

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 9/127 (7%)

Query: 524  SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
            +  +  K      + Q   ++      +QLD   RD         A   +  Q   +AL 
Sbjct: 1017 ALAIRAKEEQEAALRQ--EQQAQEAETEQLDTLSRDETRRQEEELAREKEAAQARLKALE 1074

Query: 584  LYKRFRLLS-----RQKEEIEKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQEA 636
               R   +      R+K++ E++  +  AK   +  +         E+  Q+  +  +E+
Sbjct: 1075 EQVRQGKIKKQEQKRRKQQAEQEAREKEAKLAAQRAELEAAQERERELQRQLESLGDEES 1134

Query: 637  MIEGFGK 643
              +  G 
Sbjct: 1135 SSDDDGP 1141


>gi|114602558|ref|XP_001157426.1| PREDICTED: transcription elongation regulator 1 isoform 1 [Pan
           troglodytes]
          Length = 970

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 616 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 675

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 676 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 723

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 724 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 772

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 773 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 832

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 833 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 885


>gi|28896072|ref|NP_802422.1| DNA polymerase III delta prime subunit [Streptococcus pyogenes
           SSI-1]
 gi|28811322|dbj|BAC64255.1| putative DNA polymerase III delta prime subunit [Streptococcus
           pyogenes SSI-1]
          Length = 451

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 54/178 (30%), Gaps = 12/178 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K+     + E A+L ++  +P  + E  + L    +     + L+  + S     +    
Sbjct: 10  KMLPHDPVSEQAVLGSIFINPEKIIEVAEYLKPDDFYKPAHRILFKAMLSISGNAEPIDV 69

Query: 535 EEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVD-VRQGYQQAL- 582
             +   L  +             E++  +              +   +  +      ++ 
Sbjct: 70  VTVKSVLESQDNLATIGGITYLLEVVNAVPTSAHAEHYAKIVAKKAQLRSIIDNLSDSIG 129

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             Y     +     + E+ + +V+          +  +L E + +I +  +    I G
Sbjct: 130 NAYDENMDIDEIIAKTERSLIEVSQSSNKSSFRPIHDVLAENYQKIEERSNNNTQITG 187


>gi|110634154|ref|YP_674362.1| seryl-tRNA synthetase [Mesorhizobium sp. BNC1]
 gi|123353591|sp|Q11HC8|SYS_MESSB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|110285138|gb|ABG63197.1| seryl-tRNA synthetase [Chelativorans sp. BNC1]
          Length = 431

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 37/99 (37%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L  R   E    L   +R  G   A   + + +     +       + +    Q+    K
Sbjct: 2   LDIRWIRENADALVLALRKRGQEEAAARSTVEEAIAADEARRTHLTKLQEAQEQRNAASK 61

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +I +  A G+ EK   L + + E+   I   E+QE  ++
Sbjct: 62  EIGKALAAGDKEKAERLKAEVAELKGFIQDGEAQERALD 100


>gi|332220702|ref|XP_003259493.1| PREDICTED: prelamin-A/C [Nomascus leucogenys]
          Length = 664

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ + ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|325269262|ref|ZP_08135880.1| chaperone protein ClpB [Prevotella multiformis DSM 16608]
 gi|324988389|gb|EGC20354.1| chaperone protein ClpB [Prevotella multiformis DSM 16608]
          Length = 862

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 16/143 (11%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSA 565
            I   +    KL         +      +EI +RL +     E +K+ D   + A L   
Sbjct: 388 AIDLMDEAAAKLRME-----RDSVPEELDEITRRLKQLEIEREAIKREDDTEKIAQLDKE 442

Query: 566 TTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI------- 616
             E    +   R  ++   AL  + +   ++ E ++ +  +   +G  E+ A        
Sbjct: 443 IAELREQEHSFRAKWEGERALVNKIQQDKQEMENLKYEADRAEREGNYERVAEIRYSRLK 502

Query: 617 -LISILHEVHIQIHQIESQEAMI 638
            L   +  +  Q+   +  +AM+
Sbjct: 503 QLEDDIKNIQQQLQATQGGQAMV 525



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/279 (11%), Positives = 76/279 (27%), Gaps = 38/279 (13%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + L  +DM              +    +   +     +I        
Sbjct: 220 RIVRGDVPENLKDKQLYSLDMGAMLAGAKYKGEFEERLKSVIKEVTKAEGNI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGGGEGAMDAANILKPALARGELRAIGATTLNEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      +++ P  L                   +   L   +             R+ +
Sbjct: 328 ERRFQTVMVDEPDELDAI---------------SILRGLKERYENHHKV-------RIQD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 +K  +R + D  L     +       +   +  ++ +    ++R+ +++E +  
Sbjct: 366 DACIAAVKLSERYISDRFLPDKAIDLMDEAAAKLRMERDSVPEELDEITRRLKQLEIERE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQ----IHQIESQEAMI 638
            +  + + EK A L   + E+  Q      + E + A++
Sbjct: 426 AIKREDDTEKIAQLDKEIAELREQEHSFRAKWEGERALV 464


>gi|313897528|ref|ZP_07831070.1| exonuclease SbcCD, C subunit [Clostridium sp. HGF2]
 gi|312957480|gb|EFR39106.1| exonuclease SbcCD, C subunit [Clostridium sp. HGF2]
          Length = 1008

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/124 (10%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
           +L     +   +Q+     +  ++  ++             ++             D+++
Sbjct: 686 RLRQLEINLAQQQRDHEHAQKEEQQAQQALQAAEISWQAVAQNRIQEEEMQGLKQEDLQK 745

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             QQ      +   L  + ++++++   IA+   +    +   L+  + ++ +++  I +
Sbjct: 746 REQQLQEYALKKEQLKTRIQDLQQRCAAIAEQNLEALLAQQEQLMQEVEQLQLKLADITT 805

Query: 634 QEAM 637
            EAM
Sbjct: 806 HEAM 809


>gi|307594762|ref|YP_003901079.1| SMC domain-containing protein [Vulcanisaeta distributa DSM 14429]
 gi|307549963|gb|ADN50028.1| SMC domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 803

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 51/147 (34%), Gaps = 20/147 (13%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDR------QVRDAGLWS 564
            +L++    LF +      +  E + + L   E     L  +L+       ++ +     
Sbjct: 481 EDLRRRRDSLFEELSRISGYSEESLRRELEGIEGELSRLNSELEGLGRAKVELAELRGRL 540

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA--------- 615
           A+ +     VR G  + L ++     +  +  E+E +I ++       K           
Sbjct: 541 ASVDELERRVRDGEARLLNIHSERLSVEGRLRELEGRIRELEGVRARIKELSVRRDLLVR 600

Query: 616 ---ILISILHEVHIQIHQIESQEAMIE 639
               L   ++ +  +I ++  + A  E
Sbjct: 601 EVGELRGRVNALRDRIEKLRGELASRE 627


>gi|119481553|ref|XP_001260805.1| dynactin, putative [Neosartorya fischeri NRRL 181]
 gi|119408959|gb|EAW18908.1| dynactin, putative [Neosartorya fischeri NRRL 181]
          Length = 1378

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 67/226 (29%), Gaps = 15/226 (6%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           +   L ++  K            +K       +    +     + K +   +P   E   
Sbjct: 328 VARELDEMKTKLKVMEKKRAEDREKLKTLEKLQSERDKFEA-IIQKLQAKYQPQQLEIGE 386

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF- 546
           L   +       E+ + L        E+  L   +  +  +        +  R+ E    
Sbjct: 387 LRKKLKDTEAKLEEVERLQAEHESILEMAALDREMAEETADAFKHECAVLRTRVEELELE 446

Query: 547 -------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-YKRFRLLSRQKEEI 598
                   E L Q+      +       E     +R+   +   +  ++   L  Q +E+
Sbjct: 447 LDVLKEENEELGQVMTPEEKSSHGWLQMEKTNERLREALIRLRDMTQQQESELRDQIKEL 506

Query: 599 EKQIAQVTA-----KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           ++ +    A     +   +K  +  + + ++  Q+      E MIE
Sbjct: 507 QQDLEDYAAIKSQYEATKDKLLVSENNVEDLKQQLETALGAEEMIE 552


>gi|116283966|gb|AAH52941.1| Cgn protein [Mus musculus]
          Length = 831

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 64/169 (37%), Gaps = 9/169 (5%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKY 531
           K ++ ++  LRE  L          +    QE+  +R     + ++L   +     +   
Sbjct: 462 KQRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAA 521

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              E   ++       EL ++L+    + G W +  + N  ++R   Q+ L L      +
Sbjct: 522 LEAE---RQKMSSLVRELQRELEETSEETGHWQSMFQKNKEELRAAKQELLQLRMEKEEM 578

Query: 592 SRQKEE----IEKQIAQVTAK-GEAEKTAILISILHEVHIQIHQIESQE 635
             +  E    +++ + Q  A   +  +   L   L     ++ ++++++
Sbjct: 579 EEELGEKMEVLQRDLEQARASTRDTHQVEELKKELRRTQGELKELQAEQ 627


>gi|57014047|gb|AAW32540.1| lamin A/C transcript variant 1 [Homo sapiens]
          Length = 664

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ + ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|18652658|gb|AAD28718.2|AF112359_1 myosin heavy chain A [Schmidtea mediterranea]
          Length = 1344

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +  + +L     +   +        +K  + +  K    + +  ++ + +       +E
Sbjct: 326 LEEAKKKLNADIDELKKDVEDLESSLQKAEQEKVAKDQQIKSLNDNVREKEEQLAKMQKE 385

Query: 485 AALLLTLINH-PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRL 541
                 L       L+ + +++ ++     +L+     +  +   ++      E+  +++
Sbjct: 386 KKAADELQKKTEESLKAEEEKVRNLHKAKAKLEPALDEMEENLGREQKIRADVEKAKRKV 445

Query: 542 CER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                   ELL  L+R   +        E  +       +    L      L R+ +E++
Sbjct: 446 EGELKQNQELLNDLERIKSELEEQLKRKEIELNGANSKIEDESNL---VATLQRKIKELQ 502

Query: 600 KQIAQVTAKGEAEKTA---------ILISILHEVHIQIHQ 630
            +I ++    EAE+ A          L + L E+  ++ +
Sbjct: 503 ARIQELEEDLEAERQARAKAEKAKHQLEAELEEISERLEE 542


>gi|50955821|ref|YP_063109.1| ATP-dependent Clp protease, ATP-binding subunit [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|50952303|gb|AAT90004.1| ATP-dependent Clp protease, ATP-binding subunit [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 734

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 72/237 (30%), Gaps = 26/237 (10%)

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y     +RL+ + ++          +  +        G    +  S+++K  L++    
Sbjct: 124 MYRGQFEERLKAVLKEIDAAEGRIITFVDELHILMGAGGGEGSVAASNMLKPMLARG--- 180

Query: 483 REAALLLT--------LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            E  L+           I   A L+ ++Q++        +   +   L   +        
Sbjct: 181 -ELRLIGATTLDEYREFIEKDAALERRFQQVYVGEPSVEDTVAILRGLKGRYEAHHGVT- 238

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                 + +          +R +    L     +       +   +  +       L RQ
Sbjct: 239 ------IEDSALVAAASLSNRYITARQLPDKAIDLIDEAASRLKMEIDSAPVEIDTLQRQ 292

Query: 595 KEEI---EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE----SQEAMIEGFGKM 644
            E I   E  + +       E+   L   L E   ++ +++    S++A +   G++
Sbjct: 293 VERIKLEEFALKKEKDAASKERLEQLRQRLGEQQRELTELQERWWSEKAALTRVGEL 349


>gi|73960920|ref|XP_864434.1| PREDICTED: similar to Lamin A/C (70 kDa lamin) isoform 4 [Canis
           familiaris]
          Length = 665

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 101/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   +  +LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVTKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         + E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LADKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|317419302|emb|CBN81339.1| Liprin-alpha-3 [Dicentrarchus labrax]
          Length = 1223

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 72/210 (34%), Gaps = 19/210 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKK--NARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              + D+L    Q+ I+      R  +     + R   GPS  L  S L + +  +    
Sbjct: 212 VSMLEDQLAASSQEVISLRDQIKRRQQGVDGGKDRLPNGPSSGLEDSELERQREGEIE-- 269

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           R+ A L  L    A++  Q  E+        +L      +       +    E       
Sbjct: 270 RQRAELSQLRERLALMCRQVGEIE------EQLAAARREVTKSEEANQKLQREVKEALCQ 323

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                E +  L+R+   A   +     ++ D++   +  LA       L RQ EE  +Q+
Sbjct: 324 REDMEERITTLERRYLSAQREA----TSLHDIKDKLENELAS---KESLHRQSEEKNRQL 376

Query: 603 AQVTAKGEAEKTAILISI--LHEVHIQIHQ 630
            +   + + +    L     L E+  Q+ Q
Sbjct: 377 QERLDEAKQKLQQTLQRAETLPEIEAQLAQ 406


>gi|195118064|ref|XP_002003560.1| GI17983 [Drosophila mojavensis]
 gi|193914135|gb|EDW13002.1| GI17983 [Drosophila mojavensis]
          Length = 2091

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 90/299 (30%), Gaps = 52/299 (17%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI--KD 417
               +R        +          +   RE +       + +   +   +     +  KD
Sbjct: 1473 CEELRQQLHEKDVEWSQRQQEWEHLQL-RELQQAHEKVQEVQLLAKERFRELEAQLVAKD 1531

Query: 418  QKLRYY---YSQAIRDRLQQLFQKYITEHSGYGRYWKK-NARHRDQKGPSQRLMQSSLVK 473
            ++ +     Y Q I  +L+   Q+         +   +   +   +    ++L +   + 
Sbjct: 1532 EEKKQALQTYHQEIAHQLRHKQQQLTAAEQQVLQLQTRLQEQDAKELQLREKLTRVENIN 1591

Query: 474  GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             +   + ++RE  L               + +  I     ELQ L +       E K   
Sbjct: 1592 AQRLSEATMREEQL--------------QERIKSI---TKELQTLRAS-----TEHKERD 1629

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
               +  RL      E+        R +   S++  ++   V     +A +L     +   
Sbjct: 1630 ---LRDRLTLSE-DEISVLRSSSQRRSPSRSSSGLSDTGSVELWRSEAESLRHVLDMKQE 1685

Query: 594  QKEEIEKQIAQVTAKGEAEKTA-------ILISIL------------HEVHIQIHQIES 633
            +  ++ KQ A++    E +++           + +             ++  Q+ +++ 
Sbjct: 1686 KIADLTKQNAELKRDNEEQRSMCNRLTLLESQNEMLRTELEAKSEKEKDLQRQMEEMQK 1744


>gi|145512930|ref|XP_001442376.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409729|emb|CAK74979.1| unnamed protein product [Paramecium tetraurelia]
          Length = 588

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 101/281 (35%), Gaps = 16/281 (5%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
           + +  S    + L     +        E+ E     +  +  +K  + R    + ++   
Sbjct: 311 EQLKNSRERQEYLKNSGEKGYDLKNSREKLEDLQRSREILYELKSSRERLNQLEDLKKSR 370

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           +++ Q    + S   +   +  R   ++    R  + +L++ +  +  S +   L  +  
Sbjct: 371 ERMEQIEELKKSRERQIQIEELRKSRERLEDLRKSRETLMQLEQERNNSDKMEELKKS-- 428

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFGELLK 551
                 +E+ +EL   R +  E +     L     E+         ++L + +   E + 
Sbjct: 429 ------RERIEELQKQRKNLEEQRTYQERLEQQKKERAEVDLRRSQEKLSDLKKSRERVD 482

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK--QIAQVTAKG 609
           QL+   +         E      R+  +Q      R + L  Q+  +E+  Q+ ++    
Sbjct: 483 QLEALRKSREQERNIEEMRQS--RERIEQLRESQLRIQQLENQRRSLERSRQLEKIERDL 540

Query: 610 EAE--KTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           + E  ++   I  L E+  ++ + E + A+ E    +  R+
Sbjct: 541 DYEKKRSQERIQRL-ELEAELERKERERALEEEINFVQSRI 580



 Score = 38.3 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 102/282 (36%), Gaps = 20/282 (7%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD F +    T   +   E +  ++   +  T  +      E  +        +   +++
Sbjct: 227 PDYFQKERQLTDQLRRSRERIIQLEKENEEFTNLQRSRERVEELKKSREYLEELKKSREK 286

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +    +  R+RL+ L      + S       KN+R R +   +       L   +   
Sbjct: 287 VEQLEELRDSRERLEDL------KKSRERLEQLKNSRERQEYLKNSGEKGYDLKNSREKL 340

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +   R   +L  L       +E+  +L D++     ++++     S   + +     +  
Sbjct: 341 EDLQRSREILYEL----KSSRERLNQLEDLKKSRERMEQIEELKKSRERQIQIEELRKSR 396

Query: 539 QRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           +RL + R   E L QL+++  ++            ++++  ++   L K+ + L  Q+  
Sbjct: 397 ERLEDLRKSRETLMQLEQERNNSDKM--------EELKKSRERIEELQKQRKNLEEQRTY 448

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            E+   Q   + E +        L ++     +++  EA+ +
Sbjct: 449 QERLEQQKKERAEVD-LRRSQEKLSDLKKSRERVDQLEALRK 489


>gi|150397861|ref|YP_001328328.1| hypothetical protein Smed_2663 [Sinorhizobium medicae WSM419]
 gi|150029376|gb|ABR61493.1| OmpA/MotB domain protein [Sinorhizobium medicae WSM419]
          Length = 342

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 13/138 (9%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
             L + L +       F+  +        G  E+L +L+ Q+ +     A  ++   D+ 
Sbjct: 20  DALSTLLMAIMFLLSVFVTAQFLLGREISGKDEVLNRLNSQINELTQLLALEKSGKQDLE 79

Query: 576 QGYQQALALYKRFRLLSRQKEEIE-----------KQIAQVTAKGEAEK--TAILISILH 622
                  A   +      + + +            ++I ++ ++ E E+  +A  +S + 
Sbjct: 80  DSLANLQASLSQSEGERSRLQALLDRGAGSAEVADEKIGRLGSELENERQVSARAMSQIE 139

Query: 623 EVHIQIHQIESQEAMIEG 640
            ++ QI  + SQ A IEG
Sbjct: 140 LLNQQIAALRSQIAAIEG 157


>gi|73960924|ref|XP_851808.1| PREDICTED: similar to lamin A/C isoform 3 isoform 3 [Canis
           familiaris]
          Length = 635

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 101/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   +  +LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVTKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         + E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LADKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|74210637|dbj|BAE23668.1| unnamed protein product [Mus musculus]
          Length = 729

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 70/225 (31%), Gaps = 21/225 (9%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             L+    Q +++RL +       E   Y +   + A          RL +  + +  L+
Sbjct: 338 SSLQNQALQTLQERLHEADATLKREQESYKQMQSEFA---------ARLNKMEVDRQNLA 388

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPE 535
           +  +L E         +    ++  +    ++     L+     L     +        E
Sbjct: 389 EAVTLAER-------KYSEEKKKVDELQQQVKLHRASLESAKQELVDYKQKATRILQSKE 441

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQ 594
           ++   L E    E L+       +        E    ++++   Q   L    + +  +Q
Sbjct: 442 KLINSLKEGSSFEGLESSTASSMELEELRHEKEMQKEEIQKLMGQMHQLRSELQDMEAQQ 501

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             E E    Q+    +            E+  ++ +++ +   +E
Sbjct: 502 VSEAESAREQLQDLQDQIAKQRTSK--QELETELERMKQEFRYME 544



 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 95/255 (37%), Gaps = 12/255 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSG 445
            E +       +   +++      +N +  +  R   ++A  + +R     +K + E   
Sbjct: 353 HEADATLKREQESYKQMQSEFAARLNKM--EVDRQNLAEAVTLAERKYSEEKKKVDELQQ 410

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             +  + +     Q+    +   + +++ K     SL+E +    L +  A   E  +  
Sbjct: 411 QVKLHRASLESAKQELVDYKQKATRILQSKEKLINSLKEGSSFEGLESSTASSMELEELR 470

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +      E+QKL   +     E +    +++ +        E L+ L  Q+        
Sbjct: 471 HEKEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEA---ESAREQLQDLQDQIAKQRTSKQ 527

Query: 566 TTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             E  +  ++Q ++     L++    L  + ++ E++I ++  +   +  +       E+
Sbjct: 528 ELETELERMKQEFRYMEEDLHRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNSSQ--SEL 585

Query: 625 HIQIHQIESQEAMIE 639
             ++HQ+   E +I+
Sbjct: 586 ESRLHQL--TETLIQ 598


>gi|325856627|ref|ZP_08172265.1| ATP-dependent chaperone protein ClpB [Prevotella denticola CRIS
           18C-A]
 gi|325483341|gb|EGC86316.1| ATP-dependent chaperone protein ClpB [Prevotella denticola CRIS
           18C-A]
          Length = 862

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 16/143 (11%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSA 565
            I   +    KL         +      +EI +RL +     E +K+ D   + A L   
Sbjct: 388 AIDLMDEAAAKLRME-----RDSVPEELDEITRRLKQLEIEREAIKREDDTEKIAQLDKE 442

Query: 566 TTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI------- 616
             E    +   R  ++   AL  + +   ++ E ++ +  +   +G  E+ A        
Sbjct: 443 IAELREQEHSFRAKWEGERALVNKIQQDKQEMENLKYEADRAEREGNYERVAEIRYSRLK 502

Query: 617 -LISILHEVHIQIHQIESQEAMI 638
            L   +  +  Q+   +  +AM+
Sbjct: 503 QLEDDIKNIQQQLQATQGGQAMV 525



 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 30/279 (10%), Positives = 76/279 (27%), Gaps = 38/279 (13%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + L  +DM              +    +   +     +I        
Sbjct: 220 RIVRGDVPENLKDKQLYSLDMGAMLAGAKYKGEFEERLKSVIKEVTKAEGNI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGGGEGAMDAANILKPALARGELRAIGATTLNEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      +++ P  L                   +   L   +             R+ +
Sbjct: 328 ERRFQTVMVDEPDELDAI---------------SILRGLKERYENHHKV-------RIQD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 +K  +R + +  L     +       +   +  ++ +    ++R+ +++E +  
Sbjct: 366 DACIAAVKLSERYISNRFLPDKAIDLMDEAAAKLRMERDSVPEELDEITRRLKQLEIERE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQ----IHQIESQEAMI 638
            +  + + EK A L   + E+  Q      + E + A++
Sbjct: 426 AIKREDDTEKIAQLDKEIAELREQEHSFRAKWEGERALV 464


>gi|307705024|ref|ZP_07641910.1| hypothetical protein SMSK597_1030 [Streptococcus mitis SK597]
 gi|307621426|gb|EFO00477.1| hypothetical protein SMSK597_1030 [Streptococcus mitis SK597]
          Length = 104

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 46 HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAI 95
          H E   SF    +   +  FS  ++GD + F+  + G SF E++  L+  
Sbjct: 32 HSEHD-SFRIFSTTNTFKWFSRDIQGDVIDFVRLVKGISFKEALDFLSEE 80


>gi|227893826|ref|ZP_04011631.1| replicative DNA helicase DnaB [Lactobacillus ultunensis DSM 16047]
 gi|227864315|gb|EEJ71736.1| replicative DNA helicase DnaB [Lactobacillus ultunensis DSM 16047]
          Length = 464

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 3/122 (2%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +     S  E A+L  +   P  + +    +    +     Q ++  +           
Sbjct: 6   SQQIPHDSDAEKAVLGAIFIDPEAIADASAVVQPEDFYEKANQIVFQAMIDLSDRGDAID 65

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  +   L +      L  +      + L  AT  A  V          AL +R    S+
Sbjct: 66  PLTLQDELNK---RNQLDDIGGISYVSELAMATPTAAHVTYYAQIVHRKALLRRLISASQ 122

Query: 594 QK 595
             
Sbjct: 123 TI 124


>gi|221504983|gb|EEE30648.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 1213

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/207 (12%), Positives = 63/207 (30%), Gaps = 6/207 (2%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            ++++LR    +   +R+  L +   +         +K    +  +   QRL ++   + +
Sbjct: 879  ENRRLRASIERLETERMSLLERTEKSRVEFLALVAEKGRSDKQARDALQRLAEAESQQER 938

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLP 534
             ++   L    L   L      ++    EL          ++ +S L S           
Sbjct: 939  STQALKLHAQDLEERLAKKEEQVRSLRGELEAAIVRAEAAEREFSRLRSSLSLASGPADF 998

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                          +    +                     +  +      +R + LSR+
Sbjct: 999  AAGFPAFSSEEASTVAASEEHSKHAKEAQLQLVLLLAECAEESLR---MSAQREKQLSRE 1055

Query: 595  KEEIEKQIAQVTAKGEA--EKTAILIS 619
              E+E+Q+ +     +   E+   L++
Sbjct: 1056 VTELERQLDRALQTMDEASEQAEALLA 1082


>gi|148727282|ref|NP_001092024.1| prelamin-A/C [Pan troglodytes]
 gi|146741476|dbj|BAF62394.1| lamin A/C, transcript variant 1 [Pan troglodytes verus]
          Length = 664

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ + ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|119604712|gb|EAW84306.1| hook homolog 2 (Drosophila), isoform CRA_b [Homo sapiens]
          Length = 719

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 84/262 (32%), Gaps = 23/262 (8%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  DE  +           +   + R    + +R +++QL ++         +   +  R
Sbjct: 295 DEMDELRQSSERAGQLEATLTSCRRRLGELRELRRQVRQLEERNAGHAERTRQLEDELRR 354

Query: 456 HRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLTL---INHPAILQEQYQELADIRYD 511
               +     +  Q   ++G+  ++    E  L         + ++ +E+ + LA+    
Sbjct: 355 AGSLRAQLEAQRRQVQELQGQRQEEAMKAEKWLFECRNLEEKYESVTKEKERLLAERDSL 414

Query: 512 NNELQKLWSFLFS---DFVEQKYFLP-----EEIHQRLCERGFGELLKQLDRQVRDAGLW 563
               ++L                  P     + +   +      E L +L  + +     
Sbjct: 415 REANEELRCAQLQPRGLTQADPSLDPTSTPVDNLAAEILPAELRETLLRLQLENKRLCRQ 474

Query: 564 SATTEANIVDVRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKGEAE 612
            A       ++++  + A                +   L  Q E+++K + +   K E  
Sbjct: 475 EAADRERQEELQRHLEDANRARHGLETQHRLNQQQLSELRAQVEDLQKALQEQGGKTEDV 534

Query: 613 KTAILISILHEVHIQIHQIESQ 634
            + +L   L E   ++H+ + +
Sbjct: 535 SSILLKRKLEEHLQKLHEADLE 556


>gi|119479573|ref|XP_001259815.1| myosin type II heavy chain, putative [Neosartorya fischeri NRRL 181]
 gi|119407969|gb|EAW17918.1| myosin type II heavy chain, putative [Neosartorya fischeri NRRL 181]
          Length = 2405

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 102/311 (32%), Gaps = 29/311 (9%)

Query: 356  GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            G DP  +     K  F   ++  L        R    +  +      +  I  K      
Sbjct: 835  GLDPAWYRVGRTKVFFRAGVLAELEEQRDQLIRTIMTQFQSAARGFIQRRISNKRLYRAE 894

Query: 416  KDQKLR---YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
              + ++     Y    R+   +LF +            +   R    K    ++ Q    
Sbjct: 895  ATRIIQHNFQVYLDMKRNHWWRLFSRMKPLLGETRTANEVKKRDEKIKELEAKMKQDIAE 954

Query: 473  KGKLSKKPSLREAAL--LLTLIN-HPAILQEQYQELADIRYDNNEL-QKLWSFL------ 522
            + KL ++    E  +  +  ++    A+  ++ +    ++    EL +KL   +      
Sbjct: 955  RQKLDEERRRTEIEIQKIQHILESERALALDKEEIFKRLQLREIELTEKLAGAIADQESL 1014

Query: 523  ---FSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVR--- 575
                   +  K    E++ QR+ +    GE++++L+ + RD        +  + + +   
Sbjct: 1015 EDQLDTLIAAKKKADEQLSQRITQLEQAGEIIERLEAEKRDLQARLDVLDRQLEEAQSSV 1074

Query: 576  -------QGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                   +   Q + + +    L  R+ +++E ++ +     +  K A     L     Q
Sbjct: 1075 AEQEARVKELGQEIKMLQSHLSLKDRKIQDLEAKLLKTDQDLDI-KLARTSKDLELSKKQ 1133

Query: 628  IHQIESQEAMI 638
            I  +  +   I
Sbjct: 1134 IKDLVEENRSI 1144



 Score = 37.9 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 27/279 (9%), Positives = 82/279 (29%), Gaps = 7/279 (2%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +  +R                  +       +       D   +    L+   + +K + 
Sbjct: 1159 EEMLRRKESEIAVLRNDTKKHQEEKEHLETEKASLSTRHDNMQKRLRELQAESDAMKSE- 1217

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             +    + + D  + L +K   +            + +D K    +       + +    
Sbjct: 1218 -KSQLEREVADVKKLLEEKISEDAEAGESRKLLEQQIQDLKNQLFQAQADLSRERQSRDD 1276

Query: 480  PS-LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--E 536
               L E  L      + ++ + +     ++    + L++      +    +K    E  +
Sbjct: 1277 VQMLAEHNLAELRDKYASLNESKIIIEKEMYIQQDTLRRATEARAAAEQSRKELQTELIK 1336

Query: 537  IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            +  R  +     L  + + +       +   ++   D+ +  +Q   + +    LS + +
Sbjct: 1337 LRDRFTKVESARLNAEAEIERNVKKQANERLDSVRKDLEEKARQLEDVEEERSRLSTRVQ 1396

Query: 597  EIEKQIAQVT--AKGEAEKTAILISILHEVHIQIHQIES 633
            E+   IA+         +    L   L  +  ++   E+
Sbjct: 1397 ELTNAIAESENFRIRHDQHKERLERELVTLKGRLTASEN 1435



 Score = 37.2 bits (84), Expect = 8.1,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 91/291 (31%), Gaps = 19/291 (6%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +                 ++   + E E       +  A L   L++  +   ++ L   
Sbjct: 2017 KETSMEQTRLKYQREFSTLNNELEMEREKVLNVRSE-NARLREELEDLRSKWDNEVLNSS 2075

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                 + R++   Q   T          +            R +++S       +    +
Sbjct: 2076 TWAKEKARMEITLQDVTTSRDEAVNAHNEAQGRVVSLLSQVRSLRTSFDDITAERDTLFK 2135

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDN----NELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            E  +L   +       E+ +ELA     +      + +    L S   +Q+      + +
Sbjct: 2136 EKKMLEARLAE---AAERLEELAKGESPSMRNAASMDRELLELKSKLAQQEDVSAAAVGK 2192

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKR--------FRL 590
                      +++     R+A       +A +   +++   + + L  +         R 
Sbjct: 2193 MRRAEALVTEMQKEVTAEREANAQLFKDKAALEKQLKEAQLRCVDLETKSYSTGSQDVRF 2252

Query: 591  LSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQEAMIE 639
            L ++ +E+E  + +   K  +E+     +   + ++  Q+ + +   A +E
Sbjct: 2253 LHKRIKELETHLEEQENKHSSEQRSLRNVDRTVKDLQSQLERRDKLNAQLE 2303


>gi|47219261|emb|CAG11723.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1335

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/142 (11%), Positives = 48/142 (33%), Gaps = 3/142 (2%)

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            +E  +++  I      +  L   +     E K    E+    L E        +  ++  
Sbjct: 938  EEGQEKINAINEKAKAVSALEREISKYVEEGKDEYKEQKESELQETNSQLHEAEKHKEKV 997

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
               + +   + +   V++ + Q     ++      + +E+  +   +  +    +   L 
Sbjct: 998  SKEMGTIRQDIDTQKVQERWLQDNLTLRKRV---EELKEVVSKRDALRKEMGNMQVLQLR 1054

Query: 619  SILHEVHIQIHQIESQEAMIEG 640
                EV  Q+ +++   ++  G
Sbjct: 1055 QERREVERQLEELKKNRSIAVG 1076



 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/255 (10%), Positives = 74/255 (29%), Gaps = 23/255 (9%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYY---SQAIRDRLQQLFQKYITEHSGYGRYWKK 452
              +E  +        +    D++L+  Y    + +R++ ++L               + 
Sbjct: 280 KQMEEDNKELEETMEQVFQGSDEQLQDNYHNHQRTVREKERRLTDCQKELEKAGRECQRL 339

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
           N    D      RL   +       +    +  +L   L           +      +  
Sbjct: 340 NRVKADLLVEQGRLQLEADRHAHNIRTRDAQVRSLSSYL---------DLEGYDRTPFSA 390

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ--------LDRQVRDAGLWS 564
            +LQ     +     +++  L   + +   +    +            L+R V       
Sbjct: 391 LQLQSFHRHVTERLEQERQTLAGAMAELQEKEQQKQQAIDDMRDKKTGLERTVELKRDLQ 450

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
              +  + ++R   Q       R + L  +  + E+++         E    L + + E+
Sbjct: 451 GKKQQELRNIRAELQGLEGSSSRLQELESELAKAERELQSAVQGSNVE---ELKNEVVEL 507

Query: 625 HIQIHQIESQEAMIE 639
             +   ++  +  ++
Sbjct: 508 QREKADLDRSQRQLD 522


>gi|324990532|gb|EGC22468.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis SK353]
          Length = 641

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 63/158 (39%), Gaps = 17/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 541

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++ + +  D+   +   +  +   ++  ++   L +R   L  Q E+++ QI+
Sbjct: 542 KAELEALRE-ETEQVDSDKPAPANDYQLQ--KENQKEQRRLARRLEQLEAQIEDLDSQIS 598

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
           Q+       +     + L E   QI Q+ +  +EAM+E
Sbjct: 599 QLQEAM---QATNDAAELMENQQQIDQLTAAQEEAMLE 633


>gi|302844219|ref|XP_002953650.1| hypothetical protein VOLCADRAFT_94497 [Volvox carteri f. nagariensis]
 gi|300261059|gb|EFJ45274.1| hypothetical protein VOLCADRAFT_94497 [Volvox carteri f. nagariensis]
          Length = 2031

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 90/291 (30%), Gaps = 19/291 (6%)

Query: 350  FVLLSRGEDPD--SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
                  G+D               E L       +     R TE  +    +  A +  H
Sbjct: 1470 RAWRVDGDDIKQRDARINELSQDVESLQAAQRTCLLDADARLTEMLAAQRAEYEAAVSRH 1529

Query: 408  LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN-ARHRDQKGPSQRL 466
            +      + D++     +Q + ++++ + ++     +     W     R ++    +++ 
Sbjct: 1530 MAFVDRLLADKEALSSRAQQLAEQVKSVDERQERAIAKLKEGWAAELKRQKESWAAAEKQ 1589

Query: 467  MQSSLVKGKLSKKPSL----REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
             + + ++ K ++   +     E  +   L  H A L    Q  A+    +          
Sbjct: 1590 RREAWMQSKATEIKDMTVKGLEGEVQKLLARHRAELSAAQQAAAEEAKRH---------- 1639

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
               +V Q      ++ +R+       + K+           S   E  +   R       
Sbjct: 1640 LDAYVAQNEVAVRQLKERMSREAEEAVEKERASAATRLREVSERYEQQLQTQRMRLVADA 1699

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             L  R   L + ++E +K+  +  A  +    A L     +   +   I++
Sbjct: 1700 DL--RLEQLEQARKEDKKRYEEAIAAAKEAGEARLKEAEEDWKREKEAIDA 1748


>gi|317152202|ref|YP_004120250.1| hypothetical protein Daes_0483 [Desulfovibrio aespoeensis Aspo-2]
 gi|316942453|gb|ADU61504.1| hypothetical protein Daes_0483 [Desulfovibrio aespoeensis Aspo-2]
          Length = 196

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG---VP 99
           CPF  +K  SF      G   C +C   G+ ++  + + G    E+   L A+     + 
Sbjct: 27  CPFCGKK--SFTPYRDNGVARCHACAWSGNAINLYAQVKGVDTKEAFADLVALYNAKAIK 84

Query: 100 LPVVDPKIEKKE 111
           L     K   ++
Sbjct: 85  LKPKTRKEAVEQ 96


>gi|229553905|sp|B3EX63|CING_SORAR RecName: Full=Cingulin
 gi|190344044|gb|ACE75821.1| cingulin (predicted) [Sorex araneus]
          Length = 1153

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 73/221 (33%), Gaps = 20/221 (9%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARH---RDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             R++   +  + E     +     A+    +D     + L +    K ++ ++   RE 
Sbjct: 419 AGRVRSELETQVMELQDQLKQGPVPAKEGLMKDLLETRELLEEVLEGKQRVEEQLRQRER 478

Query: 486 AL--LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            L  L   +    +     +     +    + ++L   +     +Q     E   ++   
Sbjct: 479 ELTALKGALKE-EVASRDQEVEHVRQQCQRDTEQLRKSIQDASQDQAALEAE---RQKMS 534

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE----IE 599
                L ++L+    + G W    + N  ++R   Q+ L L      +  +  E    ++
Sbjct: 535 ALVRGLQRELEETSEETGHWQTMFQKNKEELRAAKQELLQLRMEKDEMEEELGEKMEALQ 594

Query: 600 KQIAQVTAKGEAEKTAILISILH-------EVHIQIHQIES 633
           +++ Q  A     +    +  L        E+  Q  Q++ 
Sbjct: 595 RELGQARAGAGGSRQVEELRKLQGEAERVRELEQQNLQLQK 635



 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 87/284 (30%), Gaps = 24/284 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              W  E E  S      + E +   +       D        + +  RLQ L Q+   + 
Sbjct: 845  KEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAEKKR 904

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA----ALLLTLINHPAILQ 499
                   ++     ++    +  +       +L      R       L   L+   +  Q
Sbjct: 905  RSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSARQ 964

Query: 500  EQYQELADIRYDNNELQKLWSFLF-----SDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
            +   +   +   N +L+   + L      S  + Q      E+ +RL      + +  L 
Sbjct: 965  DLECDKISLERQNKDLKGRLASLEGFQKPSASLSQLESQNRELQERLQAEDREKTV--LQ 1022

Query: 555  RQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQV-------- 605
               R            I D RQ    Q   L  + + L RQ +E E++I ++        
Sbjct: 1023 STNRKLERRVKELSIQIDDERQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQ 1082

Query: 606  -TAKGEAEKTAILISILHEVHI---QIHQIESQEAMIEGFGKMS 645
               + + E    L + +  +     +     + E+ ++  G  S
Sbjct: 1083 RELEEQHEANEQLQARIRALEKDSWRKAARSAAESSLQQEGLSS 1126


>gi|119574997|gb|EAW54612.1| discs, large homolog 5 (Drosophila), isoform CRA_d [Homo sapiens]
          Length = 1817

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/331 (9%), Positives = 87/331 (26%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +L       +     
Sbjct: 193 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNADLSRLEQLGEENQRLLKQTEMLTQQRDTA 252

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E                      
Sbjct: 253 IQLQHQCALSLRRFEAIH--HELNKATAQNKDLQWEMELLQSELTELRTTQVKTAKESEK 310

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
               +D      Y   + +R Q + +  K  TE        K +   +         ++ 
Sbjct: 311 YREERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAANEEMEALRQ 369

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                 +    + +E  +L                         + + L   L     E 
Sbjct: 370 IKDTVTMDAGRANKEVEILR-----------------------KQCKALCQELKEALQEA 406

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 407 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 463

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+   +   +  +   L++ 
Sbjct: 464 DVSRELKELKEQME--SQLEKEARFRQLMAH 492


>gi|119574996|gb|EAW54611.1| discs, large homolog 5 (Drosophila), isoform CRA_c [Homo sapiens]
          Length = 1809

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/331 (9%), Positives = 87/331 (26%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +L       +     
Sbjct: 193 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNADLSRLEQLGEENQRLLKQTEMLTQQRDTA 252

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E                      
Sbjct: 253 IQLQHQCALSLRRFEAIH--HELNKATAQNKDLQWEMELLQSELTELRTTQVKTAKESEK 310

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
               +D      Y   + +R Q + +  K  TE        K +   +         ++ 
Sbjct: 311 YREERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAANEEMEALRQ 369

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                 +    + +E  +L                         + + L   L     E 
Sbjct: 370 IKDTVTMDAGRANKEVEILR-----------------------KQCKALCQELKEALQEA 406

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 407 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 463

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+   +   +  +   L++ 
Sbjct: 464 DVSRELKELKEQME--SQLEKEARFRQLMAH 492


>gi|17509391|ref|NP_492085.1| UNCoordinated family member (unc-15) [Caenorhabditis elegans]
 gi|3874342|emb|CAB01965.1| C. elegans protein F07A5.7a, confirmed by transcript evidence
           [Caenorhabditis elegans]
 gi|3875472|emb|CAA96622.1| C. elegans protein F07A5.7a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 872

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 91/273 (33%), Gaps = 23/273 (8%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D   +            E+          +      +   +R  L+    + +  + DQK
Sbjct: 163 DQLQKDKHTAEKAAERFEAQANELANKVEDLNKHVNDLAQQRQRLQAENNDLLKEVHDQK 222

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           ++    Q ++  L Q  ++         R   +      Q       ++++L +  +++ 
Sbjct: 223 VQLDNLQHVKYTLAQQLEEARRRLEDAERERSQLQSQLHQVQLELDSVRTALDEESIARS 282

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +          + +  I Q + +  A++   + E++ L   +     E           
Sbjct: 283 DAEH-----KLNLANTEITQWKSKFDAEVALHHEEVEDLRKKMLQKQAEY---------- 327

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              E     +L+++ +  +      +  E  IVD+ +       L +    L RQ  E++
Sbjct: 328 ---EEQIEIMLQKISQLEKAKSRLQSEVEVLIVDLEKAQNTIALLERAREQLERQVGELK 384

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +I ++T +            L  V+ ++ +++
Sbjct: 385 VRIDEITVE-----LEAAQRELRAVNAELQKMK 412


>gi|19070633|gb|AAL83937.1| DLG5 [Homo sapiens]
          Length = 1809

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/331 (9%), Positives = 87/331 (26%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +L       +     
Sbjct: 193 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNADLSRLEQLGEENQRLLKQTEMLTQQRDTA 252

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E                      
Sbjct: 253 IQLQHQCALSLRRFEAIH--HELNKATAQNKDLQWEMELLQSELTELRTTQVKTAKESEK 310

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
               +D      Y   + +R Q + +  K  TE        K +   +         ++ 
Sbjct: 311 YREERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAANEEMEALRQ 369

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                 +    + +E  +L                         + + L   L     E 
Sbjct: 370 IKDTVTMDAGRANKEVEILR-----------------------KQCKALCQELKEALQEA 406

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 407 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 463

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+   +   +  +   L++ 
Sbjct: 464 DVSRELKELKEQME--SQLEKEARFRQLMAH 492


>gi|332663971|ref|YP_004446759.1| hypothetical protein Halhy_2001 [Haliscomenobacter hydrossis DSM
           1100]
 gi|332332785|gb|AEE49886.1| hypothetical protein Halhy_2001 [Haliscomenobacter hydrossis DSM
           1100]
          Length = 273

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 52/141 (36%), Gaps = 21/141 (14%)

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEE--------IHQRLCERGFGELLKQLDRQVRD 559
           + ++ ++L+  +  + +       F+  E        I Q L  R        L   +  
Sbjct: 71  LEFETSDLESTYQRIRTAAQTNGAFVSNESTANEYDRIVQHLTIRVPSRNFDPLLSAISK 130

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
                 T     VDV + +  A A  K  + + ++ +++ K+  +             IS
Sbjct: 131 GVKHFDTKNIEAVDVTEEFVDAEARLKTKKQVEQRYQDLLKRANK-------------IS 177

Query: 620 ILHEVHIQIHQIESQEAMIEG 640
            + E+  QI ++ ++   IEG
Sbjct: 178 EILEIEKQIGELRAEIESIEG 198


>gi|322504673|emb|CBZ14502.1| conserved hypothetical protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 3658

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 79/278 (28%), Gaps = 12/278 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY---- 422
               A  +         D     E   ++    +  A      +     +  +  +     
Sbjct: 2846 QADAEAQRAENGKLCGDNERLAEELEKAQEEAERLAGELEKAQEEAERLAGELEKAQADA 2905

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
               +A  D+L+   ++   E        ++ A   ++       +   L K +   +   
Sbjct: 2906 EALRAEIDKLRGDNERLAEELEKAQEEAERLAGELEKAQEEAERLAGELEKAQADAEAQR 2965

Query: 483  REAALL----LTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             E   L      L      LQE+ + LA ++     E ++L   L     + +    E  
Sbjct: 2966 AENGKLCGDNERLAEELERLQEEAERLASELEKAQEEAERLAGELEKAQADAEAQRAENG 3025

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKE 596
                      E L+ L  +           +      R    +     +R    L R +E
Sbjct: 3026 KLCGDNERLAEELESLQEEAERLAGELEKAQEEAEAQRAENGKLCGDNERLAEELERLQE 3085

Query: 597  EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            E E+   ++      E+   L   L +   +  ++  +
Sbjct: 3086 EAERLAGELEKA--QEEAERLAGELEKAQEEAERLAGE 3121



 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 66/211 (31%), Gaps = 8/211 (3%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL- 488
             +L    ++ + E        ++ A   ++       +   L K +   +    E   L 
Sbjct: 2340 GKLCGDNERLVEELERLQEEAERLAGELEKAQEEAERLAGELEKAQADAEAQRAENGKLC 2399

Query: 489  ---LTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                 L      LQE+ + LA ++     E ++L   L     + +    E         
Sbjct: 2400 GDNERLAEELERLQEEAERLAGELEKAQEEAERLAGELEKAQADAEAQRAENGKLCGDNE 2459

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIA 603
               E L+ L  +           +A+    R    +     +R    L R +EE E+   
Sbjct: 2460 RLAEELESLQEEAERLAGELEKAQADAEAQRAENGKLCGDNERLAEELERLQEEAERLAG 2519

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++      E    L   L +V     ++ ++
Sbjct: 2520 ELEKA--QEDAERLAGELEKVQANAERLRAE 2548



 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 83/294 (28%), Gaps = 18/294 (6%)

Query: 347  RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
             +  V +    D    +    + +  +         D               +E   L+ 
Sbjct: 797  PLYAVTIKEYNDLHDALHREQEESDRQRAENRKLFGDNE----------KLAEELESLQE 846

Query: 407  HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
              +     I+  +      +A   +L    ++ + E        ++ A   ++       
Sbjct: 847  EAERLAGEIEKAQADAEAQRAENGKLCGDNERLVEELESLQEEAERLASELEKAQEEAER 906

Query: 467  MQSSLVKGKLSKKPSLREAALL----LTLINHPAILQEQYQELA-DIRYDNNELQKLWSF 521
            +   L K +   +    E   L      L+     LQE+ + LA ++     E ++L   
Sbjct: 907  LAGELEKAQADAEAQRAENGKLCGDNERLVEELESLQEEAERLASELEKAQEEAERLAGE 966

Query: 522  LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
            L       +    E            E L+ L  +           +A+    R    + 
Sbjct: 967  LEKAQANAEAQRAENGKLCGDNERLVEELESLQEEAERLASELEKAQADAEAQRAENGKL 1026

Query: 582  LALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                +R    L R +EE E+   ++      E+   L   L +         ++
Sbjct: 1027 CGDNERLAEELERLQEEAERLAGELEKA--QEEAERLAGELEKAQADAEAQRAE 1078



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 81/266 (30%), Gaps = 23/266 (8%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
             + A            D   +R    +     +   E    L+     +  +  +   +Q
Sbjct: 1657 QEEAERLAGELEKAQADAEAQRAENGKLCGDNERLVEELESLQEEAERLAGELEK---AQ 1713

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
               +RL    +K   +         K     ++       +Q    +     + +  +A 
Sbjct: 1714 EEAERLAGELEKAQADAEAQRAENGKLCGDNERLAEELERLQEEAERLAGELEKAQADAE 1773

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ER 544
             L     +  +  +  +   ++     E ++L   L     E+     E +   L   + 
Sbjct: 1774 ALRA--ENGKLCGDNERLAEELESLQEEAERLAGEL-----EKAQEDAERLAGELEKVQA 1826

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                L  +LD+   DA   +   E    D  +              L + +E+ E+   +
Sbjct: 1827 DAETLTAELDKLCGDAERLADELEKAQEDAERL----------AGELEKAQEDAERLAGE 1876

Query: 605  VTA-KGEAEKTAILISILHEVHIQIH 629
            +   +G+AE+ A  +  L E   ++ 
Sbjct: 1877 LEKVQGDAERLAAELEKLQEDAERLA 1902



 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 71/225 (31%), Gaps = 22/225 (9%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            +RLQ+  ++   E        ++ A   ++       +   L K +   +    E   L 
Sbjct: 1458 ERLQEEAERLAGELEKAQEDAERLAGELEKAQEEAERLAGELEKAQEDAERLTAEIDKLR 1517

Query: 490  ----TLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYF---------LPE 535
                 L      LQE+ + LA ++     + ++L   L     + +             E
Sbjct: 1518 GDTERLAEELEKLQEEAERLAGELEKAQEDAERLAGELEKVQEDAERLTAEIDKLHGDAE 1577

Query: 536  EIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ----ALALYKRFR 589
             + + L   +     L  +L++   +A   +   E    D      +         +   
Sbjct: 1578 RLAEELEKLQEEAERLAGELEKAQEEAERLAGELEKAQADAEAQRAENGKLCGDNERLAE 1637

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             L R +EE E+  +++      E+   L   L +         ++
Sbjct: 1638 ELERLQEEAERLASELEKA--QEEAERLAGELEKAQADAEAQRAE 1680


>gi|301630819|ref|XP_002944514.1| PREDICTED: chaperone protein clpB-like, partial [Xenopus (Silurana)
           tropicalis]
          Length = 739

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 70/210 (33%), Gaps = 46/210 (21%)

Query: 474 GKLSKKPSLREAALLLTLINHPAI---------LQEQYQELADIRYDNNELQKLWS---- 520
            K  +K +  E      L++ P++         L+E+Y+    +   +  +         
Sbjct: 185 RKYIEKDAALERRFQKILVDEPSVEATIAILRGLREKYELHHGVEITDPAIVAAAELSHR 244

Query: 521 FLFSDFVEQKYFL---PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           ++   F+  K            ++      E + +LDR++    +     +    +  Q 
Sbjct: 245 YVTDRFLPDKAIDLIDEAAAKIKIEIDSKPEAIDKLDRRLIQLQIEREAVKREKDEASQK 304

Query: 578 YQQALALYKRFRLLSRQKEEIE------------------------KQIAQVTAKGEAEK 613
             Q +        L R+  ++E                         QI ++  +G+  K
Sbjct: 305 RLQLIEE--EITKLQREIADLEDIWKSEKAQAQGSQQVREQIEKVKLQIEELKRQGDFNK 362

Query: 614 TAIL-ISILHEVHIQIHQIESQEAMIEGFG 642
            A L    L E+  ++ + ++QE   EG G
Sbjct: 363 VAELQYGQLPELEKRLKEAQAQE---EGQG 389


>gi|224066469|ref|XP_002188691.1| PREDICTED: similar to TATA element modulatory factor 1 [Taeniopygia
           guttata]
          Length = 1105

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 47/142 (33%), Gaps = 4/142 (2%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQL 553
            +  E  +     R     L   +  L            E     L        EL   L
Sbjct: 652 KLQAEVEELEERNRSVQAALDSAYKELADLHKANATKDSEAQEAALSREMKAKEELGLAL 711

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           ++   +A          + D+R   Q+A     ++   L ++  E+++++ +  ++   E
Sbjct: 712 EKAQEEARQQQEALAIQVADLRLALQRAEQQAARKEDYLRQEIGELQQRLQEAESR-NQE 770

Query: 613 KTAILISILHEVHIQIHQIESQ 634
            +  + S    +  QI  +++ 
Sbjct: 771 LSQSVTSATRPLLRQIENLQAT 792


>gi|119886200|ref|XP_590382.3| PREDICTED: DAZ interacting protein 1-like [Bos taurus]
          Length = 767

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 81/265 (30%), Gaps = 27/265 (10%)

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
           L   +          +T   +             +       K ++      + +R +L+
Sbjct: 158 LQTGAHSYHTCHLCDKTFMNATFLRGHIQRRHTGMVEGGKQRKQEQPVEEVLEELRAKLK 217

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
               +   +     +   + A         + + Q      K   +   +E A L   I 
Sbjct: 218 WTQGELEAQREAERQRQLQEA---------EIIRQREAETKKEFDEWKEKERAKLYGEI- 267

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
              + +  + E   +   N+ L++    L S  V +           L +    E L+Q 
Sbjct: 268 -DKLKKLFWDEFKSVANQNSTLEEKLQALQSHSVMKSNL------GSLRDEEPEERLRQ- 319

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                   LW+   +  I      +++ +   +       QK E+++Q  ++ A    ++
Sbjct: 320 -----AQELWALKEKMEIQKTE--WRRKMKALQEEHA--AQKRELQEQNERLQATLSQDQ 370

Query: 614 TAILISILHEVHIQIHQIESQEAMI 638
                    ++H    Q++ Q  +I
Sbjct: 371 RKAAAQAQRQIHALRTQLQEQARLI 395


>gi|6729037|gb|AAF27033.1|AC009177_23 unknown protein [Arabidopsis thaliana]
          Length = 603

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/274 (10%), Positives = 81/274 (29%), Gaps = 13/274 (4%)

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
           ++    ++  + + +  +  E     T  +       L+   +          Y +   +
Sbjct: 125 WQGREEQNQKIEEAINNKCKE--WETTKSQLEARIEELQARQDVTTSSVHEDLYPK--LE 180

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            L++       +        K     RD    +        ++G         E   L  
Sbjct: 181 ALEKENSALKLQLLSKSEEVKIRTIERDLSTQAAESASKQQLEGIKKLTKLEAECRKLRV 240

Query: 491 LINHPAILQEQYQELAD-------IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           ++       +    + +       + + +NE+Q     +              +   L  
Sbjct: 241 MVRRSDNSSDLKSSIDNQSDYSGRVSFSDNEMQSPSEKIIGKSSMATSVDIGLMDDFLEM 300

Query: 544 RGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                L   +  R+  ++      + A++  ++   + +L             E  + Q+
Sbjct: 301 EKLAALPHSEPGRKHSESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQL 360

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            ++   G  E+   L S L E+  ++ +++  EA
Sbjct: 361 -EMALNGSKEQIEALQSRLKEIEGKLSEMKKLEA 393


>gi|19070635|gb|AAL83938.1| DLG5 [Homo sapiens]
          Length = 1809

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/331 (9%), Positives = 87/331 (26%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +L       +     
Sbjct: 193 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNADLSRLEQLGEENQRLLKQTEMLTQQRDTA 252

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E                      
Sbjct: 253 IQLQHQCALSLRRFEAIH--HELNKATAQNKDLQWEMELLQSELTELRTTQVKTAKESEK 310

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
               +D      Y   + +R Q + +  K  TE        K +   +         ++ 
Sbjct: 311 YREERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAANEEMEALRQ 369

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                 +    + +E  +L                         + + L   L     E 
Sbjct: 370 IKDTVTMDAGRANKEVEILR-----------------------KQCKALCQELKEALQEA 406

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 407 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 463

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+   +   +  +   L++ 
Sbjct: 464 DVSRELKELKEQME--SQLEKEARFRQLMAH 492


>gi|223933693|ref|ZP_03625669.1| replicative DNA helicase [Streptococcus suis 89/1591]
 gi|330833753|ref|YP_004402578.1| replicative DNA helicase [Streptococcus suis ST3]
 gi|223897646|gb|EEF64031.1| replicative DNA helicase [Streptococcus suis 89/1591]
 gi|329307976|gb|AEB82392.1| replicative DNA helicase [Streptococcus suis ST3]
          Length = 451

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 7/155 (4%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            L + ++  +  L E ++L  +      L    + +    +  +  + ++  + +     
Sbjct: 3   ELDELRVQPQDILAEQSVLGAIFLDEGKLVFVREYIEAEDFFKHAHKLIFKAMIALSDRN 62

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +      +   L   G       L+     A L    +        + Y + +A     R
Sbjct: 63  EAIDATTMRNYLVNHG------DLENIGGLAYLAEIISSVPTAANAEFYAKIVAEKSNLR 116

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            L  +  +   Q  +  A G  +  A     L +V
Sbjct: 117 KLIARLTDAVNQAYE-GADGSDDIIANAEKALIDV 150


>gi|289622081|emb|CBI51259.1| putative ZIP1 protein [Sordaria macrospora]
          Length = 4070

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 94/308 (30%), Gaps = 13/308 (4%)

Query: 338  VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS-FN 396
                 I   R     L+   D             +KL  +   L D   K   +      
Sbjct: 3176 KKMEEINDFRAEMAKLNEALDTGDISLKQNADEIKKLKSDVQRLTDETVKLNKDTVKLKE 3235

Query: 397  TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
                  E+    +  IN + D   +       +++L    Q  I          KK+   
Sbjct: 3236 DNKSWQEMVDQHQTEINKLNDSIRKTEEEIKRKEKLLATRQGEINRLKAEVAGLKKDVAE 3295

Query: 457  RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
            +D++   +    S+L K   +K+ S      L  L      L+++ ++L           
Sbjct: 3296 KDKQLKDRDGELSNLKKSIAAKETS------LEKLEKEKTALEKKVEDLEGEVLCRRRSL 3349

Query: 517  KLWSF-LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
             L    +      +     E   Q+   +   ++   L  +  + G         + D+ 
Sbjct: 3350 DLREAKILDLTNSENAARIELEKQKSRNKSLEDINIGLRNRALNEGDSLDRLGVKVTDLN 3409

Query: 576  QGYQQ----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                Q      +L +    L    + + K + +      A++   +  +  E+  +   +
Sbjct: 3410 AQLFQNENELASLREERDGLQADIQNLTKAL-RDEGANVAQRNEDIEQLKQELTAKQSAL 3468

Query: 632  ESQEAMIE 639
            ++++A I+
Sbjct: 3469 DAKQAAIQ 3476



 Score = 37.6 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 83/280 (29%), Gaps = 22/280 (7%)

Query: 378  SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
            +    D+   ++      +  D +      L++ I  ++ +     Y   + +R      
Sbjct: 3448 AQRNEDIEQLKQELTAKQSALDAKQAAIQDLQSAIETLESEL--DSYKSQLAERQNAYDS 3505

Query: 438  KYITEHSGYGRYWKKNARHRDQ-----------KGPSQRLMQSSLVKGKLSKKPSLREAA 486
               +  +      ++ A  + +           +     L      K     +   R   
Sbjct: 3506 LTQSSTTSQEELARRAAETQARLIACEAEIASLQSVITDLNADITTKKSQIAENEERIEN 3565

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC---E 543
            LL     + A L      +A+++ +    Q+L     +                     +
Sbjct: 3566 LLREAGTNEAQLARMKNTIAELQEEQENHQRLLEDYKTRLAAAAAASSSGSDIASDTSYD 3625

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 L+ +L     +  +     +  +  +      +++   +   L R   E  + + 
Sbjct: 3626 DCGEPLVTKLSADGSERLVRVI--DDFMEMIPMPVGSSVSALSQE-QLDRLLGEARRALQ 3682

Query: 604  QVTAKG---EAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    G   + E+  +  ++  E+  Q  + +  E MI+G
Sbjct: 3683 EGETNGGADDKERVVVRQTMKRELAEQRRKQDKLERMIDG 3722


>gi|272718628|gb|ACZ95703.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
          Length = 746

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 531 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 590

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 591 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 650


>gi|237749075|ref|ZP_04579555.1| replicative DNA helicase [Oxalobacter formigenes OXCC13]
 gi|229380437|gb|EEO30528.1| replicative DNA helicase [Oxalobacter formigenes OXCC13]
          Length = 463

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/185 (9%), Positives = 54/185 (29%), Gaps = 21/185 (11%)

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
               +   +L       E ++L  L+   A        +    +   + + ++  +    
Sbjct: 8   TDPQIESLRLPPHSIEAEQSVLGGLLLDNAAWDRIADLVNQDDFYRFDHRLIYQHISKLI 67

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
              K      +++ L   G  E   ++        L   T  A  +       +   + +
Sbjct: 68  NASKPADVITVYESLSGIGKAE---EIGGLSYLNALAQNTPSAANIRHYAQIVRDRGVLR 124

Query: 587 RFRLLSRQK---------EEIEKQIAQVTAK-----GEAEKTAILISILH----EVHIQI 628
           R   +S +          +E+++ + +          E  +       +     +V  +I
Sbjct: 125 RLITVSDEISASAFQSQGKEVKQILDEAETSIFAIAEEGARGTQGFQEIQPLLTQVVERI 184

Query: 629 HQIES 633
            ++ +
Sbjct: 185 DELYN 189


>gi|210608828|ref|ZP_03288024.1| hypothetical protein CLONEX_00203 [Clostridium nexile DSM 1787]
 gi|210152894|gb|EEA83900.1| hypothetical protein CLONEX_00203 [Clostridium nexile DSM 1787]
          Length = 662

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 88/282 (31%), Gaps = 26/282 (9%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           + L V + P                 P    + E+ ++     I D  L    ++ I  +
Sbjct: 387 QMLFVSATPGEYEEKNELLRVDQIIRPTGLLDPEVEVRPVEGQIDD--LVGEVNKEIAKK 444

Query: 432 LQQLFQKYITEHSGYGRYWKK--NARHRDQKGPSQRLMQSSLVKGKLSKKPS-LREAALL 488
            + L        +     + +    R +        L ++ +++         L    LL
Sbjct: 445 NKILITTLTKRMAEDLTDYMRELGIRVKYLHSDIDTLERTEIIRDMRLDVFDVLVGINLL 504

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH-QRLCERGFG 547
              ++ P I      +     +    L+   S + +     +      I           
Sbjct: 505 REGLDIPEITLVAILDADKEGF----LRSETSLIQTIGRAARNADGHVIMYADHVTESME 560

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR----------------FRLL 591
           + +++ +R+ +    ++         V++  +  +++ K+                 + L
Sbjct: 561 KAIQETERRRKIQMAYNEEHGITPQTVKKSVRDLISISKKVAAEELRLEKDPESMSEKEL 620

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +  +++ KQ+ +  A+   E  A L   L E+  Q+  +E 
Sbjct: 621 EKLIKDVTKQMKKAAAELNFEAAAELRDKLIELKKQLQDMEG 662


>gi|195036094|ref|XP_001989506.1| GH18838 [Drosophila grimshawi]
 gi|193893702|gb|EDV92568.1| GH18838 [Drosophila grimshawi]
          Length = 2027

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 84/248 (33%), Gaps = 40/248 (16%)

Query: 402  AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
             ++   + +    +++Q  R    +  + +     Q          +  ++  R +D   
Sbjct: 1441 QKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDASRQERQAKERYGREKDVLQ 1500

Query: 462  PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY---DNNELQKL 518
              +  ++ +L   +L     L+E  L               +EL ++ +      E  +L
Sbjct: 1501 AEKFTVEQTLADTRLD--LELKEDKLASL-----------QRELEEMTFGGGTEEEFAQL 1547

Query: 519  WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                       +     E   +  E    E+  Q+    +       T E    D R+  
Sbjct: 1548 R----------RSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKDARRES 1597

Query: 579  QQALALYKRFRLLS-RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE----- 632
            QQ     +  R  S ++ + +E Q+     + E E+  +L+   HE+  ++  +E     
Sbjct: 1598 QQRDEELEEVRGNSYKKMKALECQL-----ETEHEERTLLLREKHELERRLSSMEDRDRV 1652

Query: 633  ---SQEAM 637
               ++EA+
Sbjct: 1653 DRDAEEAL 1660



 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 84/284 (29%), Gaps = 21/284 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE--IHLKNCINHIKDQ 418
              +R   +   ++   E   +    +K+          +                 +   
Sbjct: 1587 ETMRKDARRESQQRDEELEEVRGNSYKKMKALECQLETEHEERTLLLREKHELERRLSSM 1646

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            + R    +   + L Q  ++ + ++    +  +          P + L++      +L  
Sbjct: 1647 EDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIR------QLRN 1700

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +    E+A  L +       Q    EL +++    E  +  +    +     +    E+ 
Sbjct: 1701 QLEDAESARTLAM----KARQTAEAELTEVQAMFEESHRARND-AEERANAAHRDRAELQ 1755

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             ++ E             ++          A  ++V +   +   L      L  Q  E+
Sbjct: 1756 AQIEENEEEL-----SELMKKYSATVKQLNAEQINVSESEFKFTELEVERNNLKEQVAEL 1810

Query: 599  EKQIAQVTAKGEAEK---TAILISILHEVHIQIHQIESQEAMIE 639
            + ++  V   G+      +  L     E+  ++   ++  A +E
Sbjct: 1811 QHRLDNVENMGDPSMAVMSKRLEMRTKELESRLELEQATRARLE 1854


>gi|114559495|ref|XP_513800.2| PREDICTED: cingulin [Pan troglodytes]
          Length = 1203

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 75/208 (36%), Gaps = 11/208 (5%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLTL 491
           Q+ +         G    K    +D     + L +    K ++ ++  LRE  L  L   
Sbjct: 444 QVMELQNKLKQVQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALKGA 503

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           +    +     +     +    + ++L   +     +      E   ++        L +
Sbjct: 504 LKE-EVASRDQEVEHVRQQYQRDTEQLRRSMQDATQDHAVLEAE---RQKMSALVRGLQR 559

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALY----KRFRLLSRQKEEIEKQIAQVT- 606
           +L+    + G W +  + N  D+R   Q+ L L     +    L  + E +++++ Q   
Sbjct: 560 ELEETSEETGHWQSMFQKNKEDLRATKQELLQLRMEKEEMEEELGEKIEVLQRELEQARA 619

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
           + G+  +  +L   L     ++ +++++
Sbjct: 620 SAGDTRQVEVLKKELLRTQEELKELQAE 647



 Score = 37.9 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 78/224 (34%), Gaps = 22/224 (9%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + +  RLQ L Q+   +        ++     ++    +  +       +L      R  
Sbjct: 937  ELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEKVSRLETELDEEKNTVELLTDRVNRGR 996

Query: 486  ----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDFVEQKYF 532
                 L   L+   +  Q+   +   +   N +L+ +L S           S    Q   
Sbjct: 997  DQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQL 1056

Query: 533  LPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
            L E +     E+       ++L+R+V++  +       ++ D +        L  R + L
Sbjct: 1057 LQERLQAEEREKTVLQSTNRKLERKVKELSIQIEDERQHVNDQKDQ------LSLRVKAL 1110

Query: 592  SRQKEEIEKQIAQVTAKGEAEKTA-ILISILHE-VHIQIHQIES 633
             RQ +E E++I ++    +  +        ++E +  +I  +E 
Sbjct: 1111 KRQVDEAEEEIERLDGLRKKAQREVEEQHEVNEQLQARIKSLEK 1154


>gi|227857|prf||1712318A dynein-associated protein
          Length = 1325

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 93/275 (33%), Gaps = 15/275 (5%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT-EHS 444
            ++E E       +   +LEI          D     Y  + + ++  +L    +     
Sbjct: 319 LQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQLKQLEEQNARLKDALVRMRDL 378

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL--QEQY 502
                 +     +  +  +Q L      + +L ++ S  E+ +        A L  +E  
Sbjct: 379 SSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMV 438

Query: 503 QELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
           + L D   +  E +++L   +       +     + + R  E    E L     +VR+A 
Sbjct: 439 EMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENARETELELREQLDMAGARVREAQ 498

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE------KTA 615
                 +  + D +Q  ++   L    + ++R+    ++   +   +   E      K A
Sbjct: 499 KRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQEASVERQQQPPPETFDFKIKFA 558

Query: 616 ILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
              +    + +++ Q+E  +A     ++  F   S
Sbjct: 559 ETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 593


>gi|71421983|ref|XP_811977.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70876703|gb|EAN90126.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1363

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 84/232 (36%), Gaps = 22/232 (9%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R    + +R  +++L                 N R +  +   QR      +K    +  
Sbjct: 609 REEVQRELRRTIEEL-----AALREQSGVDTVNLRAQLDEAVQQREEVHRELKRTSEELA 663

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +LRE + + T+     +  +  + +      + EL++    L +   EQ       +  +
Sbjct: 664 ALREQSGVDTV----NLRAQLDEAVQQREEVHRELERTIEEL-AALREQSGVDTANLRVQ 718

Query: 541 LCERGF--GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           L E      E+ ++L+R + +       +  +  ++R    +AL   ++   + R+ E  
Sbjct: 719 LDEAVQQREEVQRELERTIEELAALREQSGVDTANLRVQLDEAL---QQREEVQRELERT 775

Query: 599 EKQIAQVTAKGEAEKTA------ILISILHEVHIQIHQ-IESQEAMIEGFGK 643
            +++A +  +   +           +    EV  ++ + IE   A+ E  G 
Sbjct: 776 IEELAALREQSGVDTMNLRAQLDEAVQQREEVQRELRRTIEELAALREQSGV 827



 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 83/222 (37%), Gaps = 17/222 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + ++  L++  ++        G     N R +  +   QR      ++  + +  +LRE
Sbjct: 726 REEVQRELERTIEELAALREQSG-VDTANLRVQLDEALQQREEVQRELERTIEELAALRE 784

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            + + T+     +  +  + +        EL++    L +   EQ       +  +L E 
Sbjct: 785 QSGVDTM----NLRAQLDEAVQQREEVQRELRRTIEEL-AALREQSGVDTVNLRAQLDEA 839

Query: 545 GF--GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                E+ ++L+R   +       +  + +++R    +A+   ++   + R+ +   +++
Sbjct: 840 LQQREEVHRELERTSEELAALREQSGVDTMNLRVQLDEAV---QQREEVQRELKRTSEEL 896

Query: 603 AQVTAKGEAE------KTAILISILHEVHIQIHQIESQEAMI 638
           A +  +   +      +    +    EV  ++ +   + A +
Sbjct: 897 AALREQSGVDTANLRVQLDEALQQREEVQRELKRTSEELAAL 938



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 75/228 (32%), Gaps = 25/228 (10%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +   + L  L ++   + +       +  + R++           L   +         
Sbjct: 421 LERTSEELAALREQSGVDTANLRAQLDEAVQQREEVQRELERTIEELAALREQSGVDT-- 478

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              +         +Q++ +   ++     EL  L         EQ       +  +L E 
Sbjct: 479 ---VNLRAQLDEAVQQREEVQRELERTIEELAALR--------EQSGVDTVNLRAQLDEA 527

Query: 545 GF--GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                E+ ++L+R + +       +  + V++R    +A+   ++   + R+ E   +++
Sbjct: 528 VQQREEMQRELERTIEELAALREQSGVDTVNLRAQLDEAV---QQREEMQRELERTIEEL 584

Query: 603 AQVTAKGEAEKTA------ILISILHEVHIQIHQ-IESQEAMIEGFGK 643
           A +  +   +           +    EV  ++ + IE   A+ E  G 
Sbjct: 585 AALREQSGVDTMNLRAQLDEAVQQREEVQRELRRTIEELAALREQSGV 632



 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 88/236 (37%), Gaps = 20/236 (8%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D+ L+    + ++  L++  ++        G     N R +  +   QR      ++  +
Sbjct: 759 DEALQQ--REEVQRELERTIEELAALREQSGVDTM-NLRAQLDEAVQQREEVQRELRRTI 815

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            +  +LRE + + T+     +  +  + L      + EL++    L +   EQ       
Sbjct: 816 EELAALREQSGVDTV----NLRAQLDEALQQREEVHRELERTSEEL-AALREQSGVDTMN 870

Query: 537 IHQRLCERGF--GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           +  +L E      E+ ++L R   +       +  +  ++R    +AL   ++   + R+
Sbjct: 871 LRVQLDEAVQQREEVQRELKRTSEELAALREQSGVDTANLRVQLDEAL---QQREEVQRE 927

Query: 595 KEEIEKQIAQVTAKGEAEKTA------ILISILHEVHIQIHQ-IESQEAMIEGFGK 643
            +   +++A +  +   +           +    EV  ++ + IE   A+ E  G 
Sbjct: 928 LKRTSEELAALREQSGVDTMNLRAQLDEAVQQREEVQRELERTIEELAALREQSGV 983


>gi|328767572|gb|EGF77621.1| hypothetical protein BATDEDRAFT_13838 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 751

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 90/239 (37%), Gaps = 33/239 (13%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           ++  +    +  ++ +++L +   +E    G    +     + +   +  ++        
Sbjct: 337 NEDPKDAMLREFQEEIKRLKKMLESEGGDAGEIVHEVEEIEEIEEVEEIEVEKEKQAILA 396

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYD----NNELQKLWSF----------L 522
           +      E            +L E    LA++  +    +    KL             +
Sbjct: 397 TTGMEESER---------NRLLAEAESRLAELENERSARHELANKLAQLEQKLLVGGVNI 447

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +Q+  L ++  Q L +R    + ++L R++ D    +   E    ++++   +A+
Sbjct: 448 LDQHEQQQNMLAKQ-AQELEDR--ARMQRELQRELLDRDEMNLQIEEEFSNLQE---EAV 501

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           +  ++ + L    ++ + ++  V  + + E+   L+  + E+  ++ ++ +   +I GF
Sbjct: 502 SKTRKLKKLWNMMQQQKSELKDVQEEHQRER-EDLLETIRELTREL-KLRNL--VIGGF 556


>gi|218259782|ref|ZP_03475371.1| hypothetical protein PRABACTJOHN_01030 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224910|gb|EEC97560.1| hypothetical protein PRABACTJOHN_01030 [Parabacteroides johnsonii
           DSM 18315]
          Length = 862

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/213 (9%), Positives = 70/213 (32%), Gaps = 12/213 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++        +  +  +++    K +   K  +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVMVDEPNELDAISILRGLKEKYENHHKVRIKDDAIIAAVQLST 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S                +          +   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAARLRLQIDSVPESLDEVSRRIKQLEIEREAIKRENDKGKL 436

Query: 556 QVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +  +  +     E      + Q  ++ +   ++ ++     E ++ +  +   +G+  K 
Sbjct: 437 EQLNKEIADLKDEETKQKAQWQSEKEQINKIQQNKI---DIENLKFEADKAEREGDYGKV 493

Query: 615 AILI--------SILHEVHIQIHQIESQEAMIE 639
           A +           + EV  ++  ++   AMI+
Sbjct: 494 AEIRYGKIKQKEEEIREVQEKLKTMQGASAMIK 526


>gi|30679450|ref|NP_187178.2| unknown protein [Arabidopsis thaliana]
 gi|186509783|ref|NP_001118579.1| unknown protein [Arabidopsis thaliana]
 gi|205716708|sp|Q9MA92|FPP3_ARATH RecName: Full=Filament-like plant protein 3; Short=AtFPP3
 gi|332640692|gb|AEE74213.1| filament-like plant protein 3 [Arabidopsis thaliana]
 gi|332640693|gb|AEE74214.1| filament-like plant protein 3 [Arabidopsis thaliana]
          Length = 615

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/274 (10%), Positives = 81/274 (29%), Gaps = 13/274 (4%)

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
           ++    ++  + + +  +  E     T  +       L+   +          Y +   +
Sbjct: 137 WQGREEQNQKIEEAINNKCKE--WETTKSQLEARIEELQARQDVTTSSVHEDLYPK--LE 192

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            L++       +        K     RD    +        ++G         E   L  
Sbjct: 193 ALEKENSALKLQLLSKSEEVKIRTIERDLSTQAAESASKQQLEGIKKLTKLEAECRKLRV 252

Query: 491 LINHPAILQEQYQELAD-------IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           ++       +    + +       + + +NE+Q     +              +   L  
Sbjct: 253 MVRRSDNSSDLKSSIDNQSDYSGRVSFSDNEMQSPSEKIIGKSSMATSVDIGLMDDFLEM 312

Query: 544 RGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                L   +  R+  ++      + A++  ++   + +L             E  + Q+
Sbjct: 313 EKLAALPHSEPGRKHSESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQL 372

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            ++   G  E+   L S L E+  ++ +++  EA
Sbjct: 373 -EMALNGSKEQIEALQSRLKEIEGKLSEMKKLEA 405


>gi|315187432|gb|EFU21188.1| hypothetical protein SpithDRAFT_0185 [Spirochaeta thermophila DSM
           6578]
          Length = 797

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 36/117 (30%), Gaps = 3/117 (2%)

Query: 523 FSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
                           +++   E     L  +  R   +    +  T     +     ++
Sbjct: 562 VEQENTAHEREAARFTEQISSLEEQLEALRSENARLKEERDRMARETRTLPPEEEARIRR 621

Query: 581 ALALYKRFR-LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +    +    L+ + +E+ +Q+     + EA   A     L  +  +I  +E  EA
Sbjct: 622 EIERLTQENDALTMRIQELTRQLTAAQEELEARPPATTDEELESLKARIETLEKAEA 678


>gi|258575607|ref|XP_002541985.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237902251|gb|EEP76652.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1258

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 77/254 (30%), Gaps = 41/254 (16%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                 Y   I  R           ++G     K+      Q+ P++     SL     +
Sbjct: 398 PSAMDGYHSRIASRGSFSRGHADYPYNGSYHQPKQRGSTPTQQRPAENGNSESLHVEGDT 457

Query: 478 KKPSLREAALL------------------LTLINHPAILQEQYQELADIRYDNNELQK-- 517
            K   R   ++                    +     I ++  + L +  +  + LQ   
Sbjct: 458 IKLLQRIQNVIPDINRLVTSYRDTQNQLSAHVAQSRQIEEQHERSLMEKEFYIDALQAQI 517

Query: 518 -------------LWSFLFSDFVE-----QKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
                        L + +    +E     +++   E+  + L +      L + D +   
Sbjct: 518 QKTAKENAAEVAKLRNRISELRMELGGLQEQHRDVEDSLEELKKANDELTLARADLEQEI 577

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
           + L     E      ++  +Q      R   L+ QKEE+E    ++  + +      L +
Sbjct: 578 SNLQRTIQEQAATHAQELQRQE---QLREVALATQKEELEGYFQEIKNEDDRLAAEQLQA 634

Query: 620 ILHEVHIQIHQIES 633
              E++ +  ++ +
Sbjct: 635 REQELYDERDKLNA 648



 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/285 (10%), Positives = 88/285 (30%), Gaps = 7/285 (2%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             +        +  +          + + +  +     E A+L   +      +   + +
Sbjct: 489 VAQSRQIEEQHERSLMEKEFYIDALQAQIQKTAKENAAEVAKLRNRISELRMELGGLQEQ 548

Query: 422 YYYSQAIRDRLQQLFQKY---ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
           +   +   + L++   +      +        ++  + +      +   Q  L +  L+ 
Sbjct: 549 HRDVEDSLEELKKANDELTLARADLEQEISNLQRTIQEQAATHAQELQRQEQLREVALAT 608

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEI 537
           +    E            +  EQ Q      YD  + L   W     D  + K  +  + 
Sbjct: 609 QKEELEGYFQEIKNEDDRLAAEQLQAREQELYDERDKLNANWEQRLQDLEQSKTEMAADY 668

Query: 538 HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             +L  +         +L+ +  +     A  EA   ++    ++             + 
Sbjct: 669 DGKLQSKQGELDTKQGELESKQAELDAKQAELEAKQGELDAKQEELNTAKSDLEAKQAEL 728

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           +  + ++    A+ +A K   +  +  E+  +I ++E ++  +EG
Sbjct: 729 KAKQGELEAKQAEVDA-KQEEISGLKSELESKIAELEGKQHELEG 772



 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/265 (10%), Positives = 78/265 (29%), Gaps = 23/265 (8%)

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
           EN +  +     +    L+   N I D        +  +++L     +       + R  
Sbjct: 444 ENGNSESLHVEGDTIKLLQRIQNVIPDINRLVTSYRDTQNQLSAHVAQSRQIEEQHERSL 503

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
            +   + D      +             +  + E  + L  +      ++    L +++ 
Sbjct: 504 MEKEFYIDALQAQIQKTAKENAAEVAKLRNRISELRMELGGLQEQH--RDVEDSLEELKK 561

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            N+EL    + L  +    +  + E+      E    E L+++    +   L     E  
Sbjct: 562 ANDELTLARADLEQEISNLQRTIQEQAATHAQELQRQEQLREVALATQKEELEGYFQEIK 621

Query: 571 IVDVRQGYQQALALYKRFRL--------LSRQKEEIEKQIAQVTAKGE------------ 610
             D R   +Q  A  +              ++ +++E+   ++ A  +            
Sbjct: 622 NEDDRLAAEQLQAREQELYDERDKLNANWEQRLQDLEQSKTEMAADYDGKLQSKQGELDT 681

Query: 611 -AEKTAILISILHEVHIQIHQIESQ 634
              +     + L     ++   + +
Sbjct: 682 KQGELESKQAELDAKQAELEAKQGE 706


>gi|317486565|ref|ZP_07945386.1| replicative DNA helicase [Bilophila wadsworthia 3_1_6]
 gi|316922165|gb|EFV43430.1| replicative DNA helicase [Bilophila wadsworthia 3_1_6]
          Length = 465

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/189 (10%), Positives = 56/189 (29%), Gaps = 16/189 (8%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
            P+     ++ +  ++       E A+L  +    ++       L+   +     Q L++
Sbjct: 3   SPADPNRATNDLLRRVPPHSVEAEQAVLGGIFIRNSVFHTLVDTLSSDDFYLPAHQTLYT 62

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEAN 570
                + +        +   L + G            EL + +          +   + +
Sbjct: 63  CFLELYRKNAPIDLVSVASYLKDHGQLEAVGGAAYLSELAQTVVSGANAEYYSTIVRDKS 122

Query: 571 IVDVR-----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI-LHEV 624
           +                   +    L  + E+    I++ T+    + +  L++    E+
Sbjct: 123 LQRSLIGACSDIISNCFDQSRSVDALLDESEQAVFSISERTSGKVFKSSKELVNRVFEEL 182

Query: 625 HIQIHQIES 633
             +  Q E+
Sbjct: 183 TKRFEQKEA 191


>gi|304384235|ref|ZP_07366646.1| chaperone protein ClpB [Prevotella marshii DSM 16973]
 gi|304334551|gb|EFM00833.1| chaperone protein ClpB [Prevotella marshii DSM 16973]
          Length = 862

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +  +     R+  ++   L     +    ++  +PEE+   +  +     +++   +  D
Sbjct: 373 KLSERYISDRFLPDKAIDLMDEAAAKLRMERDSVPEEL-DEITRKLKQLEIEREAIKRED 431

Query: 560 AGLWSATTEANIVDVRQG-------YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
                A  + +I D+R+        ++    L  R +   +Q E ++ +  +   +G  E
Sbjct: 432 DQPKIAQLDKDIADLREQEKTFRAKWESEKTLVNRIQQDKQQIENLKFEADRAEREGNYE 491

Query: 613 KTAIL----ISILHE----VHIQIHQIESQEAMI 638
           + A +    +  L +    + +Q+   +  E M+
Sbjct: 492 RVAEIRYSKLKELQDDIENIQLQLKATQGGEGMV 525


>gi|297273813|ref|XP_001111529.2| PREDICTED: 5-azacytidine-induced protein 1-like, partial [Macaca
           mulatta]
          Length = 995

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 89/288 (30%), Gaps = 24/288 (8%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           D         + A  + +       +   +R          +++  L    +  +  +K 
Sbjct: 511 DLTVRRVKETEKALSRQLQRQREHYEATIQRHLA-FIDQLIEDKKVLSEKCEAVVAELKQ 569

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  R        +R+ Q+  ++  E            + R +K  S++  +   V  +  
Sbjct: 570 EDQR------CTERVAQVQAQHELEIKKLKELMSATEKVRREKWISEKTKKIKEVTVRG- 622

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK---LWSFLFSDFVEQKYFLP 534
                 E  +   +  H   ++            ++E      L      +  EQ     
Sbjct: 623 -----LEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQA--EELREQLEREK 675

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-QQALALYKRFRLLSR 593
           E + Q+  ER      + L+++            + + + R+   QQA         L +
Sbjct: 676 EALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQ 735

Query: 594 QKEE----IEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQEA 636
           Q EE    + + +     KG  E+       L  +  Q+  + ++ EA
Sbjct: 736 QLEESSSALTRALRAEFEKGREEQERRHQMELKALKQQLELERQAWEA 783


>gi|291400794|ref|XP_002716784.1| PREDICTED: filamin A interacting protein 1-like [Oryctolagus
           cuniculus]
          Length = 1133

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 75/211 (35%), Gaps = 10/211 (4%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
            L +  + E        ++  + +  K    +    + +  + S+   LR+   L  L  
Sbjct: 275 VLAEARVQEEEKKATRLEEELQTQTTKFHQNQETIMAKLTNEDSQNRQLRQK--LAALSR 332

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCE-RGFGELL 550
               + E  +    +R    ELQ +   +              EE+ +R+ +  G  E L
Sbjct: 333 Q---IDELEETNRSLRKAEEELQDIKEKINKGECGNAGIMAEVEELRKRVLDMEGKDEEL 389

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            +++ Q RD         A   D +   ++          L     + +++   +    E
Sbjct: 390 IKMEEQCRDLNKRLEKETAQSKDFKLEVEKLNKRIMALEKLEDAFNKSKQECYSLKCNLE 449

Query: 611 AEK--TAILISILHEVHIQIHQIESQEAMIE 639
            E+  T  L   L  + ++I ++E+ E+ +E
Sbjct: 450 KERMTTKQLSQELESLKMRIKELEATESRLE 480


>gi|225685133|gb|EEH23417.1| anucleate primary sterigmata protein B [Paracoccidioides brasiliensis
            Pb03]
          Length = 1953

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 73/224 (32%), Gaps = 13/224 (5%)

Query: 420  LRYYYSQAIRD-RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +    Q I D +L Q         +G   + +  +R +D+          S       +
Sbjct: 941  EKERLYQEIEDLKLGQRRADGGRSVAGDSIFERSVSRAQDRSNSHTSDGARSRASDAEWE 1000

Query: 479  KPSLREAALLLTL----INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
               ++   L   +    + + ++  +  + ++D+      L + +        E    + 
Sbjct: 1001 SLEIKNGELRDHVSTLKLENQSLRAQLDECISDLE----ALDRAYQADVEQAEEDLQTMQ 1056

Query: 535  EEIHQRLC-ERGFGELLKQLDRQV-RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             E  Q L       E L+ L  +   +        +  I + ++   +     +  + L 
Sbjct: 1057 FERDQALQISEEREEALQDLKAEAQEEIDALGDELDQKIDECQRMEVELSNQQENLKALQ 1116

Query: 593  RQKEEIEKQIAQVT--AKGEAEKTAILISILHEVHIQIHQIESQ 634
             +     + I ++   A+   +K   +   L + + ++ Q+E  
Sbjct: 1117 AEMRSASEGIIRLEQDAQNNLQKYKSVQQELDDANRELEQMEKS 1160


>gi|219850525|ref|YP_002464958.1| hypothetical protein Cagg_3686 [Chloroflexus aggregans DSM 9485]
 gi|219544784|gb|ACL26522.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485]
          Length = 245

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 45/126 (35%), Gaps = 11/126 (8%)

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQ-RLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
             +L  ++     + +    E     R+    F   L +++   ++    +     +  D
Sbjct: 26  ADRLGGYILHIRAQGREQTRESYITFRVPFENFERALTEIEGLAKEIVSRTV----DGED 81

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           + + Y    +  +       + + + +   ++      E T +L   L E+  QI QI+ 
Sbjct: 82  ITEQYVDLRSRLRNLEATHDRIKALLESSQRL------EDTLLLYQRLSEIQGQIEQIKG 135

Query: 634 QEAMIE 639
           +   +E
Sbjct: 136 RMRYLE 141


>gi|27436946|ref|NP_733821.1| prelamin-A/C isoform 1 precursor [Homo sapiens]
 gi|125962|sp|P02545|LMNA_HUMAN RecName: Full=Prelamin-A/C; Contains: RecName: Full=Lamin-A/C;
           AltName: Full=70 kDa lamin; AltName: Full=Renal
           carcinoma antigen NY-REN-32; Flags: Precursor
 gi|54035059|gb|AAH14507.1| Lamin A/C [Homo sapiens]
 gi|55957498|emb|CAI15522.1| lamin A/C [Homo sapiens]
 gi|190690113|gb|ACE86831.1| lamin A/C protein [synthetic construct]
 gi|190691485|gb|ACE87517.1| lamin A/C protein [synthetic construct]
 gi|261857464|dbj|BAI45254.1| lamin A/C [synthetic construct]
          Length = 664

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ + ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|297467178|ref|XP_002704921.1| PREDICTED: transcription elongation regulator 1 [Bos taurus]
          Length = 1060

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/348 (8%), Positives = 105/348 (30%), Gaps = 42/348 (12%)

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
             +++ L   +P ++              +   +   +     +         +D DS  
Sbjct: 543 MEEVKKLRHPTPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPVKAKKRKRDDNKDIDSEK 602

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
               +   +     ++  ++   K+  +          +  E  L   +   +       
Sbjct: 603 EAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPR------- 655

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y       L    +K + +     R  ++    +++   ++   +  + + K + + +  
Sbjct: 656 YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRVTFS 710

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A              +++ +  +     + + L++   +   +++    +   +++  
Sbjct: 711 EFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKEDSKTRGEKIKS 759

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQALALYK---RFR 589
             F  L                  E++             D+ + Y + +A      + +
Sbjct: 760 DFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEK 819

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 820 ELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 862


>gi|297477376|ref|XP_002689326.1| PREDICTED: transcription elongation regulator 1 isoform 1 [Bos
           taurus]
 gi|296485178|gb|DAA27293.1| transcription elongation regulator 1 isoform 1 [Bos taurus]
          Length = 1062

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/348 (8%), Positives = 105/348 (30%), Gaps = 42/348 (12%)

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
             +++ L   +P ++              +   +   +     +         +D DS  
Sbjct: 545 MEEVKKLRHPTPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPVKAKKRKRDDNKDIDSEK 604

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
               +   +     ++  ++   K+  +          +  E  L   +   +       
Sbjct: 605 EAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPR------- 657

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y       L    +K + +     R  ++    +++   ++   +  + + K + + +  
Sbjct: 658 YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRVTFS 712

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A              +++ +  +     + + L++   +   +++    +   +++  
Sbjct: 713 EFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKEDSKTRGEKIKS 761

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQALALYK---RFR 589
             F  L                  E++             D+ + Y + +A      + +
Sbjct: 762 DFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEK 821

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 822 ELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 864


>gi|255560349|ref|XP_002521190.1| conserved hypothetical protein [Ricinus communis]
 gi|223539604|gb|EEF41190.1| conserved hypothetical protein [Ricinus communis]
          Length = 274

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 68/205 (33%), Gaps = 16/205 (7%)

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
           K      D      R+ +       L  + +++   +   L+++  +         D+  
Sbjct: 13  KHRQVPVDDPRLHNRVPRLHHPSTILEDRIAIQHREIQTLLLDNQQLTATHLALKQDLAL 72

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRL-------CERGFGELLKQLDRQVRDAGLW 563
            ++EL+ L +       ++   + E   + L               L Q+   V    + 
Sbjct: 73  VDDELRHLSAAAADVKAQRDDQVREVYERSLKLDAEVRSIDALRAELVQVTADVEKLSVH 132

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISI- 620
                A +  +     +A    ++   +    + ++K+I +  A  + E +  A  +   
Sbjct: 133 RQELTAELRAINSDVAKARTEAQQVAAIEADIQTMQKEIQRGRAAIENEKKLYASNLEHG 192

Query: 621 ------LHEVHIQIHQIESQEAMIE 639
                 +  V  +I ++ ++ A +E
Sbjct: 193 QTMEQNMIAVAREIEKLHAELANLE 217


>gi|194381770|dbj|BAG64254.1| unnamed protein product [Homo sapiens]
          Length = 639

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 98/282 (34%), Gaps = 16/282 (5%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 64  DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 123

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 124 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 183

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 184 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 243

Query: 554 DRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQI 602
            ++               +  A  E  I  + +  Q+  A   + R  S  Q  ++E+Q+
Sbjct: 244 IQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQL 303

Query: 603 AQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           +   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 304 SAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 345


>gi|109488330|ref|XP_001080186.1| PREDICTED: myosin-8 [Rattus norvegicus]
          Length = 1941

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1568 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVETMQSTLDAEIRSRNDALRVKKKMEG 1627

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1628 DLNEM-EIQLNHANRLAAESLRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAI 1680

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1681 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1740

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1741 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1800

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1801 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1832


>gi|150007863|ref|YP_001302606.1| endopeptidase Clp ATP-binding chain B [Parabacteroides distasonis
           ATCC 8503]
 gi|149936287|gb|ABR42984.1| endopeptidase Clp ATP-binding chain B [Parabacteroides distasonis
           ATCC 8503]
          Length = 862

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/213 (9%), Positives = 69/213 (32%), Gaps = 12/213 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++        +  +  +++    K +   K  +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQTVIVDEPSELDTISILRGLKEKYENHHKVRIKDDAIISAVQLST 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S                +              
Sbjct: 377 RYITDRFLPDKAIDLMDEAAARLRLQIDSVPESLDEVSRRIKQLEIEREAIKRENDTSKL 436

Query: 556 QVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +  +  +     E      + Q  ++ +   ++ ++     E ++ +  +   +G+  K 
Sbjct: 437 EQLNKEIADLKEEETKQKAQWQSEKEQINKIQQNKI---DIENLKFEADKAEREGDYGKV 493

Query: 615 AILI--------SILHEVHIQIHQIESQEAMIE 639
           A +           + EV  ++  ++   AMI+
Sbjct: 494 AEIRYGKIKQKEEEIREVQAKLKTMQGAAAMIK 526



 Score = 37.2 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 71/271 (26%), Gaps = 34/271 (12%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + +  +DM              +    +   +      I        
Sbjct: 220 RIVRGDVPENLKSKQIFSLDMGALIAGAKYKGEFEERLKAVVNEVTKSEGEI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      +++ P+ L                   +   L   +             R+ +
Sbjct: 328 ERRFQTVIVDEPSELDTI---------------SILRGLKEKYENHHKV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++   R + D  L     +       +   Q  ++ +    +SR+ +++E +  
Sbjct: 366 DAIISAVQLSTRYITDRFLPDKAIDLMDEAAARLRLQIDSVPESLDEVSRRIKQLEIERE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +  + +  K   L   + ++  +  + ++Q
Sbjct: 426 AIKRENDTSKLEQLNKEIADLKEEETKQKAQ 456


>gi|148696859|gb|EDL28806.1| homer homolog 3 (Drosophila), isoform CRA_a [Mus musculus]
          Length = 357

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 66/208 (31%), Gaps = 13/208 (6%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             RL +   +   E +  G     +         +    +  L + + +  P   E   L
Sbjct: 113 AARLAREKSQDGGEFTSTGLALASHQVPPSPLVSTNGPGEEKLFRSQSADTPGPTERERL 172

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +++  ++ + Q++        +   Q+L   L         +  +   QR       +
Sbjct: 173 KKMLSEGSVGEVQWEA-EFFALQD-SNQRLAGALREANAAATQWRQQLEVQRAEAELLRQ 230

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            + +L+ QV    + +   EA    V Q       L  R +   +  +       +    
Sbjct: 231 RVAELEAQVAVEPVRAGEKEATSQSVEQ-------LEARVQTKDQTLKNQSTGTREAPDT 283

Query: 609 GEAEKTAILISILH----EVHIQIHQIE 632
            E E+T   +  L     E+  Q+  +E
Sbjct: 284 AEREETQQQVQDLETRNAELEQQLRSME 311


>gi|159897193|ref|YP_001543440.1| hypothetical protein Haur_0664 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890232|gb|ABX03312.1| hypothetical protein Haur_0664 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 1125

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 66/241 (27%), Gaps = 28/241 (11%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQK------YITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
           D + +  Y  A+ DR Q L                 G + ++NA          R     
Sbjct: 648 DPRDQRQYKDAVADRAQDLVNPAGAAARQREAERQAGEFNRRNAERVRTARNPTRRSGGG 707

Query: 471 LVKGKLSKKPSLREA--------ALLLTLINHPAILQEQYQELADIRYDN-----NELQK 517
              G   +  S REA             +       QE+ + L    Y       ++  +
Sbjct: 708 SGSGSRGQSASQREAEQRIKQAEQTEAKIAKAKEDFQEKAERLTRDHYATVRKIEDDYHR 767

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL--------WSATTEA 569
                   F  QK+    +  + +      +  + L +Q               +   +A
Sbjct: 768 KALAAEQSFNRQKFADQADFLESVASMHKDDRAEALRKQTEAWDKAQAMAQAGRAKEADA 827

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +    +  +       R R L +Q  +    +       + E+   L+    ++   + 
Sbjct: 828 YLKAAEEEIEADQQRTDRMRQLRQQLADDTADLTAADRA-DLEEQLRLLDKADQIKDDLA 886

Query: 630 Q 630
            
Sbjct: 887 A 887


>gi|27436948|ref|NP_733822.1| prelamin-A/C isoform 3 [Homo sapiens]
          Length = 634

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ + ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|303257215|ref|ZP_07343229.1| conserved hypothetical genomic island protein [Burkholderiales
           bacterium 1_1_47]
 gi|302860706|gb|EFL83783.1| conserved hypothetical genomic island protein [Burkholderiales
           bacterium 1_1_47]
          Length = 341

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 17/109 (15%)

Query: 2   NYPRDFIKDLLIHIPISNLIGQYVD-WDRRKTNAVKGDYWAC-CPFHD--EKTPSFHCND 57
              +  +  +L         G Y         +          CP+    ++   F   D
Sbjct: 9   RISQSTVNTILSRAQ-----GHYKSILLSAGADETIFKTKNLECPWCAGVDR---FSYTD 60

Query: 58  S--KGFYYCFSCHVK-GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV 103
              KG  +C  C    G  +  L  +    ++++++ +A    +P+   
Sbjct: 61  KFGKGDSFCRHCGYHSG--VDLLMKIKNFGYVDALRFMARFLNLPIHEE 107


>gi|269958965|ref|YP_003328754.1| appendage-associated protein-like protein 3 (alp3) [Anaplasma
           centrale str. Israel]
 gi|269848796|gb|ACZ49440.1| appendage-associated protein-like protein 3 (alp3) [Anaplasma
           centrale str. Israel]
          Length = 521

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 12/143 (8%)

Query: 500 EQYQELADIRYDNNELQKLWSFLFSD-FVEQKYFLPEEIHQRLCERGFGELLKQL-DRQV 557
           +  +EL+ I  +      L + + S    ++   + E+   R+        L+++ ++  
Sbjct: 170 KLRKELSAIDINRKAYTALCALIASWQLKQELRAIDEKYRARIE---LQAELRKIDEKYK 226

Query: 558 RDAGLWSATTEANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           R+  L  A   A I    R+  ++ L        L R+   I+ +I         +    
Sbjct: 227 REIDLQRALRAAEIAWQAREELRRELRTIDARIELHRELRTIDARIELHRELRTIDARTE 286

Query: 617 LISILH------EVHIQIHQIES 633
           L   L       E+H ++  I+ 
Sbjct: 287 LHRELRTIDARTELHRELRTIDE 309


>gi|194217370|ref|XP_001504245.2| PREDICTED: myosin XVIIIA isoform 1 [Equus caballus]
          Length = 2039

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 94/335 (28%), Gaps = 17/335 (5%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 1461 RRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 1520

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1521 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1580

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E+ L   
Sbjct: 1581 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELESKLTTL 1639

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1640 SDQVNQRDFESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQLKNQLEESEFT- 1698

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1699 ----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1754

Query: 609  GEA---------EKTAILISILHEVHIQIHQIESQ 634
                         + +  ++ ++++  Q+ +   +
Sbjct: 1755 MNELMKKHKAAVAQASRDLAQMNDLQAQLEEANKE 1789



 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1779 LQAQLEEANKEKQELQEKLQT--LQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFER 1835

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1836 TQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1895



 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 92/305 (30%), Gaps = 36/305 (11%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             +      ++  VD   KR  +        E+       +   +   D        Q ++
Sbjct: 1370 EWRLKYERAVREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADSDESQRALQQLK 1429

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNA---RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             + Q+L  +             +N    + + +             + KL ++   RE  
Sbjct: 1430 KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEEAQREKLQREKLQREKD 1489

Query: 487  LLLT-------LINHPAI-----------LQEQYQELADIRYDNNE-LQKLWSFLFSDFV 527
            +LL         +    +           L+ + Q+++     +   L K+   L     
Sbjct: 1490 MLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEA 1549

Query: 528  -----EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ------ 576
                 E++        Q L +     L  +++R  +       + +  + + RQ      
Sbjct: 1550 KVKDQEEELDEQAGTIQMLEQAKLR-LEMEMERMRQTHSKEMESRDEEVEEARQSCQKKL 1608

Query: 577  --GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                 Q    Y+  + + R+K E+E ++  ++ +           +  ++      +   
Sbjct: 1609 KQMEVQLEEEYEDKQKVLREKRELESKLTTLSDQVNQRDFESEKRLRKDLKRTKALLADA 1668

Query: 635  EAMIE 639
            + M++
Sbjct: 1669 QIMLD 1673


>gi|114632648|ref|XP_001134873.1| PREDICTED: alpha-internexin isoform 2 [Pan troglodytes]
          Length = 499

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/316 (9%), Positives = 82/316 (25%), Gaps = 34/316 (10%)

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           G        S G D         +    +   +               +      +   L
Sbjct: 63  GLAYRRPPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRAL 122

Query: 405 EIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           E  L        +   +   + + +RD   QL +              ++    + +   
Sbjct: 123 EAELAALRQRHAEPSRVGELFQRELRDLRAQLEEASSARSQALLE---RDGLAEEVQRLR 179

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD----NNELQKLW 519
            R  + S  +    +    ++  +    +    + ++    L ++ +     + E+ +L 
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTE--------A 569
           + L +                L           + L  +   +      ++        A
Sbjct: 240 ATLQASSQAAAEVDVTVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299

Query: 570 NIVDVRQGYQQALALYKRF---------------RLLSRQKEEIEKQIAQVTAKGEAEKT 614
              +  +  ++ +  Y+R                  L RQ  E+E++       G  +  
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEER-HSAEVAGYQDSI 358

Query: 615 AILISILHEVHIQIHQ 630
             L + L     ++ +
Sbjct: 359 GQLENDLRNTKSEMAR 374


>gi|42566188|ref|NP_567176.2| XH/XS domain-containing protein / XS zinc finger domain-containing
           protein [Arabidopsis thaliana]
 gi|332656471|gb|AEE81871.1| XH/XS domain-containing protein [Arabidopsis thaliana]
          Length = 635

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/278 (10%), Positives = 82/278 (29%), Gaps = 15/278 (5%)

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-RYYYSQ 426
           K  + +   +S         R  + +S     E    E  L+   + +++    R     
Sbjct: 199 KKEWTERSGDSESKAYGWCARADDFQSQGPIGEYLSKEGTLRTVSDILQNNVQDRNTLLD 258

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + + +    +        Y R      R  D+K    +       K +           
Sbjct: 259 VLSNMIDMTNEDLNKAQHSYNRTAMSLQRVLDEKKNLHQAFAEETKKMQQMSL-----RH 313

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
           +   L +   +  E  +++ D+     +L+K    L     E++    ++       +  
Sbjct: 314 IQRILYDKEKLRNELDRKMRDLESRAKQLEK-HEALTEL--ERQKLDEDKRKSDAMNKSL 370

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
               ++  +            +    D               + L  + +E++ ++  + 
Sbjct: 371 QLASREQKKADESVLRLVEEHQRQKEDALNKILLLEKQLDTKQTLEMEIQELKGKLQVMK 430

Query: 607 AKGEAE------KTAILISILHEVHIQIHQIESQEAMI 638
             G+ +      K   +   L +   ++  +ES  +++
Sbjct: 431 HLGDDDDEAVQTKMKEMNDELDDKKAELEDLESMNSVL 468


>gi|327277443|ref|XP_003223474.1| PREDICTED: nucleoprotein TPR-like [Anolis carolinensis]
          Length = 2340

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/302 (10%), Positives = 91/302 (30%), Gaps = 44/302 (14%)

Query: 365  CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI---KDQKLR 421
               K   +    +++   +       +N +    + +  L+       N     +D + +
Sbjct: 1016 EKEKQELQDEKQKAIENKEQQLSELKKNLASMKSELQEALQRASTALSNEQHAKRDCQEQ 1075

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK-P 480
               +   +++ ++    + ++        ++  ++   K   +   Q +    + SK   
Sbjct: 1076 AKIAAEAQNKYERELMLHASDVEALQAAKEQVTKNSGIKQQLEEAAQKAESTLRESKASW 1135

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              RE  L         +           +  + +L+ L   + S   E    +   ++  
Sbjct: 1136 EERERTLKD---EASKLASRCADLEKQNQLLHEQLETLSDKMMSSVKEG---VSGALNVS 1189

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            L E G  +     ++ +          E           ++L   +R   L R+ +E+++
Sbjct: 1190 LGEEGKSQ-----EQIIEILRFIRREKEIAETRFEVAQVESLRYRQRVEHLERELQELQQ 1244

Query: 601  QIAQVTAKGE-----------------------------AEKTAILISILHEVHIQIHQI 631
             +     K +                              E+   L   L ++  ++H++
Sbjct: 1245 SLNAEREKVQVTARTIAQHEELMKKTETMNVLTETNKMLREEKERLEQDLQQMQAKLHKL 1304

Query: 632  ES 633
            E+
Sbjct: 1305 EA 1306


>gi|294506060|ref|YP_003570118.1| Tyrosine-protein kinase [Salinibacter ruber M8]
 gi|294342388|emb|CBH23166.1| Tyrosine-protein kinase [Salinibacter ruber M8]
          Length = 822

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 68/212 (32%), Gaps = 20/212 (9%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           +  RL  LF +   E +      +  A     +  SQ L +      +  ++    E A+
Sbjct: 226 VARRLANLFTEAYIELTQKSSRERVKASRTFLEQRSQELERELETIEQRIQRFQRSEDAV 285

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC---ER 544
                   ++     +  + +     EL+   S L S   E +   P ++  +L    ++
Sbjct: 286 -SLDQRQGSLTSRIAETESSLEQARIELRMEQSSLESLREELESIQPGQLSDQLASTVDQ 344

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               L  ++ +           + A          Q          + R+ +++  +I +
Sbjct: 345 EISSLQSEIAKLELSKQQLELQSGAPTPADSAQAAQ----------IDRRIQKLRARIQR 394

Query: 605 VTAKGEAEKT------AILISILHEVHIQIHQ 630
           ++ +   E              ++E+  +I +
Sbjct: 395 LSDRYVEELMGGGLSPKQGAQRINELKRRIAE 426


>gi|291619100|ref|YP_003521842.1| YjeP [Pantoea ananatis LMG 20103]
 gi|291154130|gb|ADD78714.1| YjeP [Pantoea ananatis LMG 20103]
          Length = 1111

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 76/221 (34%), Gaps = 22/221 (9%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL--TLINHP 495
             + + S   +  ++    ++    ++++         LS++    E A      + + P
Sbjct: 22  ASLPDASQLKQQLEEVKATKNAPSQTEQIQSLEAALASLSERDDALERAQQYQQVIDDFP 81

Query: 496 AILQEQYQELADI--------------RYDNNELQKLWSFLFSDFVEQKYFLPE-EIHQR 540
            + +E  Q++A +                +   LQ     +      Q+      EI   
Sbjct: 82  RLARELRQQIATLNDNAKTVRSTMSSAELEQEILQISSQLIEEGRQAQQEQDRAREISDS 141

Query: 541 L-----CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           L      +      L + +R+++ AG  +       +  RQ    A         L++  
Sbjct: 142 LSQLPQQQTEARRALTESERRLQSAGSAATPVGQAQLVARQAENAANKAKVDEYELAQLS 201

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +++A++ A+    K   L + L  +  Q+++   +EA
Sbjct: 202 ANNRQELARMRAEVHQRKVTQLDNYLQALRNQLNEQRQREA 242


>gi|257215870|emb|CAX83087.1| structural maintenance of chromosomes protein 3 [Schistosoma
           japonicum]
          Length = 823

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 48/448 (10%), Positives = 129/448 (28%), Gaps = 27/448 (6%)

Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKN-LYNFFGALNYLQKSIRKDVRRNSSSFIILV 277
             G R +S    + + NS   I F K +  L    G+        +K V +     ++  
Sbjct: 68  GTGPRVISAYVEMIFDNSDNRIPFDKNEVSLRRIIGSKKDQYFLDKKMVTKADVMNMLES 127

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVL----------CFDGDDPG 327
            G+             +   L TA    +L+LL +++   V             + +   
Sbjct: 128 AGFSRSNPYYIVKQGKIT-QLATAPDHQRLKLLREVAGTRVYDERKEESKQIFKESEAKR 186

Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
            + +     +        N    +   +  D D     +     E              +
Sbjct: 187 EQISELLNSIEDRLRTLENETKELKEYQHWDRDRRALEFTIYDRELKETRKKLEEIQTRR 246

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            ++   +        +    ++     ++D +L+    Q   +++Q      +       
Sbjct: 247 EQSSESTAEIRRAAKDCANAIEKLERDLRDNRLKEAQMQDEVEQVQASVSDVLQRREQLQ 306

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                 +        ++      L + K  ++ S  E  L      +    ++   ELA+
Sbjct: 307 LTIADYSATLRGGKSARERASEELNRVK--EQISQVERRLAELRPQYKK-AKQFEDELAN 363

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER---------GFGELLKQLDRQVR 558
               + E ++            ++    +  + + ++              + +L  +++
Sbjct: 364 -ALSDAEHRR-KELFAKQGRVNQFQSRGQRDEWIKDQMKSLSKAIKDKENTINKLTEEIK 421

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
                    + ++    +         +      R+    + +I         E+T  + 
Sbjct: 422 RDDERREKLQQDLEVAEENMTCVRKELETVSEEQRRLRREKDEIQTDRQTVYREET-RIA 480

Query: 619 SILHEVHIQIHQIESQEAMIEGFGKMSG 646
             L+ +  ++ + E     I G G ++G
Sbjct: 481 HELNNLRDELARTEHNLRSITGKGILNG 508


>gi|239995020|ref|ZP_04715544.1| Chromosome segregation ATPase, sms [Alteromonas macleodii ATCC
           27126]
          Length = 1175

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 36/358 (10%), Positives = 101/358 (28%), Gaps = 29/358 (8%)

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           + L  + T              +     DD        A +               +   
Sbjct: 584 ALLTESSTYESSTQRVPAFFNDIYLCSNDDELAETIESAFNNDDEPEGLAKGFTSAISPS 643

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G    S        A +  +  +  +  ++   +      +  +   E            
Sbjct: 644 GLWASSQWVVKPGEANDGALQRANKIKGLVDSIQESESLIDEIERSLECAKQALE----- 698

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +++  +     A+ ++  Q  +  +          ++    R  K   +   Q  ++  +
Sbjct: 699 QNEAQKQAIQSALSEKENQ--RAQLKNKLSLLEMQQEQQSTRTAKLNDELAKQELMLAKE 756

Query: 476 LSKKPSLREAALL--LTLINHPAILQEQYQELADIRYDNNELQKLWSFL----------F 523
             +   L E   L    ++ H   + +   +        +EL+ L   L           
Sbjct: 757 EEQLAQLSEKLELQEAQILEHEVHIDDVNAKRDANERTTSELRALVDTLTSQNHELALKK 816

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                 +    +++ + L +R   E +K  +R  ++    ++  E    +++   +    
Sbjct: 817 QQLENHQNLYSQQVTRNLQQR--EEYIKNKERLQKELTQLTSPEEIQEAELQSLLENKSE 874

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           L +         E+IE+ + +              ++  ++  +   I+     IEG+
Sbjct: 875 LEQLKSTKQSSLEDIEQWLREAEKGH--------QALGKDIQTRQTNIDKLNIDIEGY 924


>gi|209554013|ref|YP_002284427.1| ribose/galactose ABC transporter [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|209541514|gb|ACI59743.1| ribose/galactose ABC transporter [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 736

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 39/326 (11%), Positives = 106/326 (32%), Gaps = 21/326 (6%)

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS----FIRCYGKTAFEKLIV 376
           +DG   GL +    +  +    + G          G  P       I      A   ++ 
Sbjct: 301 YDGIAMGLISLTHPLATIPVSFLMGLLQQSADNLGGSFPQDLSGIIISFVMLGAAMFILF 360

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK--LRYYYSQAIRDRLQQ 434
           E +  V  ++      +  +   +      +  +    I  +    R  Y Q +++  ++
Sbjct: 361 ERISPVYWIYHLIYTYKGKDYYRDYENKNNNTISEYKAIYIEINKKRNQYLQELKELRKE 420

Query: 435 L--FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL--LT 490
           L  F+     +    +Y       +       ++  S  ++   +    L++  ++   T
Sbjct: 421 LDKFKNQKQYNGVNEQYQHTVNYIKTTYNNWLKVEYSKYLEQMKNNVMQLKKHLIIERAT 480

Query: 491 LINHPAI--LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           L+ +P I   ++   +L    ++N   +KL        ++ K    + + + L  +  G+
Sbjct: 481 LVYYPEINTTRKVKNKLK--HFENISAKKL------SRIKDKIHNEDFLIKNLVAKEIGK 532

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             +                E N   +       L+L  +   +     E ++   +   +
Sbjct: 533 YAQSKSFDYNKLKYLLQQYENNDSILTIDLIDELSLILKDEQVQVMFNEFKQASNENNLE 592

Query: 609 GEAEKTAILISILHE-VHIQIHQIES 633
             +     ++S ++  +  ++ Q+ S
Sbjct: 593 HISSLKNEIMSYINSLLDSRLEQLSS 618


>gi|197117352|ref|YP_002137779.1| chromosome segregation ATPase SMC [Geobacter bemidjiensis Bem]
 gi|197086712|gb|ACH37983.1| chromosome segregation ATPase SMC [Geobacter bemidjiensis Bem]
          Length = 1176

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 72/216 (33%), Gaps = 13/216 (6%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           ++L+   ++   +     R+ ++    RDQ   S+R + S   +     +   RE+    
Sbjct: 305 NKLEFQRRELANQERHGARFEEELQGLRDQLAASERELVSLETQQASFLEEHARESE--- 361

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
             + H   L E  +  A       EL +    +F+   E      +            E 
Sbjct: 362 -ALEHREALLE--EMAASEAGVTRELDEARRAMFAALSEGAQANNQHAAAVKRLASVDER 418

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI---EKQIAQVT 606
           L+   R+    G     +   +  ++   +Q   L +   LL  +       E ++ Q  
Sbjct: 419 LQASKRERVLLGERLFESNGKVDALKAEREQ---LAREKELLDEELTLAGSREAELKQAQ 475

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
             G+      L   L     ++  ++  EA   G+G
Sbjct: 476 EAGDK-LLQQLRDQLSSASSRLKSLQELEAQFAGYG 510


>gi|119713696|gb|ABL97746.1| DnaB helicase [uncultured marine bacterium EB0_41B09]
          Length = 459

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/167 (10%), Positives = 51/167 (30%), Gaps = 23/167 (13%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K+       E ++L  L+     +     +++   +  N+ + +++ +            
Sbjct: 10  KVPPHSIEAEQSILGGLLIDNKAIDRIAGQVSASDFYRNDHRIIFTHISKLIDNNDPADI 69

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR- 593
             + + L +        +L +    A L              GY + +      R L   
Sbjct: 70  VTVAESLEQN------AELTKVGGVAYLGLVAENTPTASNITGYAKIVRERSIMRNLVEV 123

Query: 594 -----------QKEEIEKQIAQVTAK----GEAEKTAIL-ISILHEV 624
                      Q ++ ++ + +  +K     +A  +  L    + E+
Sbjct: 124 GSDIVESAFSPQGKDAQQLLDESESKIFQIADAGTSEKLGFIDIKEL 170


>gi|189426322|ref|YP_001953499.1| replicative DNA helicase [Geobacter lovleyi SZ]
 gi|189422581|gb|ACD96979.1| replicative DNA helicase [Geobacter lovleyi SZ]
          Length = 456

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/179 (10%), Positives = 48/179 (26%), Gaps = 19/179 (10%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           KL  +    E ++L  ++     +    + L    +     +K++  +      ++    
Sbjct: 8   KLPPQSLEAEMSILGGILIDNDAINRVLEMLEPEEFYREAHRKIFGAMLELSDRREPCDL 67

Query: 535 EEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
             +   L  RG             L+  +              E  +          +A 
Sbjct: 68  ITLTDALKRRGDLDSCGGAAYLATLVDYVPTAANITYYCKIVKEKALNRRLITIATDIAT 127

Query: 585 --YKRFRLLSRQKEEIEKQIAQVTAKGE-------AEKTAILISILHEVHIQIHQIESQ 634
             Y     ++   +E +K +  +             +       +L  ++ +  QI   
Sbjct: 128 RGYDEQGDVNESLDEAQKALFSLAENKLRPQYYPVKDVIKDTFKMLQTLYEKKEQITGT 186


>gi|74001604|ref|XP_548735.2| PREDICTED: similar to pericentrin 2 [Canis familiaris]
          Length = 3147

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 67/189 (35%), Gaps = 18/189 (9%)

Query: 459  QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
             +  S+   QS   +  L  +  + EA L   L  H     +Q +EL+        L++ 
Sbjct: 1215 TQEQSEARKQSEKDRAALLSQMKVFEAELEEQLSRH-EACAKQAEELS-------ALRQQ 1266

Query: 519  WSFLFSDFVEQKYF-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT-TEANIVDVRQ 576
             + L      Q+ F   + + +      F   +++L+ Q+R A          +  +   
Sbjct: 1267 MAALDKHLRSQRQFMDEQAVEREHEREEFQREIQRLEEQLRQAARPRPHGPRVSDEEQLD 1326

Query: 577  GYQQALALYKRFRL-------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI- 628
               + L    R +        + ++  + +  I +   +   E  A       ++  ++ 
Sbjct: 1327 EEVELLQEKLREKSDGFNELVIKKELADRQVMIQEEEIRRLEETNASCRREAAQLREELE 1386

Query: 629  HQIESQEAM 637
             Q ++ +A+
Sbjct: 1387 RQRDAMKAL 1395


>gi|297484483|ref|XP_002694287.1| PREDICTED: Kinesin-like protein at 3A-like [Bos taurus]
 gi|296478885|gb|DAA21000.1| Kinesin-like protein at 3A-like [Bos taurus]
          Length = 1527

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 99/293 (33%), Gaps = 26/293 (8%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DP+     Y     +         +      E EN        + + E  L    N I+D
Sbjct: 630 DPEEKEVNYQVDLADLTCE---IEIKQKLIDELENSQRRLQTLKHQYEEKLILLQNKIRD 686

Query: 418 -QKLRYYYSQAI----------RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            Q  R    Q +           ++++  ++K + E +   +  +   +   +   +Q  
Sbjct: 687 TQLERDRVLQNLSTMECYTEEKANKIKADYEKRLREMNRDLQKLQAAQKEHARLLKNQSR 746

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
            +  L K +       +    L+       + +EQ +          E+ +L        
Sbjct: 747 YERELKKLQAEVAEMKKAKVALM-----KQMREEQQRRRLVETKRTREIAQLRKEQRRQE 801

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
            + +    ++  Q +  R   + +  L R  +      A  +       Q + +A     
Sbjct: 802 FQIRALESQKRQQEIVLRRKTQEVSALRRLAKPMSERVAGKKFQKKGASQSFSKA--ARL 859

Query: 587 RFRLLSRQKEEI-EKQIAQVTAKGEAEKT---AILISILHE-VHIQIHQIESQ 634
           +++ L R+  +I  +++  V  + + E+       +S++ E +  +  +++++
Sbjct: 860 KWQSLERRILDIVMQRMTIVNLEADMERLIKKREELSLMQEALRRKRERLQAE 912


>gi|288573131|ref|ZP_06391488.1| TOPRIM domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568872|gb|EFC90429.1| TOPRIM domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 845

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 16/59 (27%)

Query: 43  CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
            P  ++K PSF  +     +  F+   KG            +F E    LA   GV  P
Sbjct: 29  SPLREDKNPSFSVSLEGRCFNDFATGDKG------------TFSE----LAGRLGVNPP 71


>gi|194856521|ref|XP_001968768.1| GG25049 [Drosophila erecta]
 gi|190660635|gb|EDV57827.1| GG25049 [Drosophila erecta]
          Length = 725

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 50/155 (32%), Gaps = 21/155 (13%)

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +    L +      EL +++     + +  +     ++ +   ++    LL++L      
Sbjct: 477 DAASNLENYELQRQELIRMYEHRIEELIRSQDSATSDLKRSHNDK-VEALLQKLAECNTR 535

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRF-----------RLLSRQKEEIEKQIAQVTAK 608
                   E     +R+  +Q   L ++              + +Q +E E +I++    
Sbjct: 536 YSDMVPDYEQAKQRIRELEKQLEDLQRKLIEHEEKQNKMYLHMYQQGQEAE-RISRADQA 594

Query: 609 GEAEKTA--------ILISILHEVHIQIHQIESQE 635
            +  +           L+  L     ++  I + E
Sbjct: 595 LDLAQRQPESKVSINELLHQLQSTQDELENIRASE 629


>gi|169613160|ref|XP_001799997.1| hypothetical protein SNOG_09711 [Phaeosphaeria nodorum SN15]
 gi|160702663|gb|EAT82976.2| hypothetical protein SNOG_09711 [Phaeosphaeria nodorum SN15]
          Length = 2473

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 23/218 (10%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R      + +++ QL            R  + + +   +   S+R +   L K ++ K+ 
Sbjct: 876  RDEMIVKLEEKM-QLEAAEKQRVEDERRRAEMDIQRIQKTLESERALA--LDKEEIFKRL 932

Query: 481  SLREAAL---LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              REA L   L   I     L++Q  EL + +    E  ++W                +I
Sbjct: 933  QYREAELTEKLAGAIEDQDKLEDQLDELMEAKKKIEEQAEVWRKELEQ--------ASQI 984

Query: 538  HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
               L +        L ++D+Q+++     +        + Q  +    L     L  R+ 
Sbjct: 985  ISSLEDEKQDLETQLAEMDQQLQELEAAKSQRSQAEESLSQEVK---MLTSHLHLKERKL 1041

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            EE++ ++     K + +    L + + EV     QI+ 
Sbjct: 1042 EELQAKL----LKTDQDLDIKLAASVKEVQASKKQIKE 1075



 Score = 38.3 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 30/274 (10%), Positives = 87/274 (31%), Gaps = 11/274 (4%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
              +K +   L         + E+   +    R + +  L    + +  ++    Y +   
Sbjct: 1933 QAKKRLQNELEDYRSQHAHDVEDGETSLEQTRRKYQTELSTLTHELDVERENVIYVREEN 1992

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             RL++  ++  ++          +   +++      L   S  + + +   +  ++ ++ 
Sbjct: 1993 GRLREEIEEMRSK--WDDEVLNSSTWAKEKSRLEMTLQVISNSRDEAANAHNEAQSKIVR 2050

Query: 490  TL-INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             L  N   +  E+   + + R   + LQ+    L          +               
Sbjct: 2051 NLRTNVDDLAAERDSAIEEKRRLESRLQEAADALEDLSRSDSPAMRNAATYDRELLELKS 2110

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA----LALYKRFRLLSRQKEEIEKQIAQ 604
             L Q +     A       EA   ++++         + L+K    + +  ++++ ++  
Sbjct: 2111 GLAQQEDIAAAAVGKMRRAEALAQELQKDIVAEREANVKLHKDKAAVEKGLKDLQLRLVD 2170

Query: 605  VTAKGEAEKTAI----LISILHEVHIQIHQIESQ 634
            +  KG +         L   + E+   +   ES 
Sbjct: 2171 LETKGYSGSAGKDVRFLHGRIQELEKALETSEST 2204


>gi|169234982|ref|NP_001108422.1| coiled-coil alpha-helical rod protein 1 [Macaca mulatta]
 gi|55700792|dbj|BAD69747.1| hypothetical protein [Macaca mulatta]
          Length = 756

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 541 LQLEVARQGQQESTEEAASLRQELTQQQDLYRQALQEKVAEVETRLREQLSDTERRLNEA 600

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 601 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 660


>gi|28971817|dbj|BAC65420.1| discs large protein lp-dlg [Homo sapiens]
          Length = 1764

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/331 (9%), Positives = 87/331 (26%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +L       +     
Sbjct: 148 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNADLSRLEQLGEENQRLLKQTEMLTQQRDTA 207

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E                      
Sbjct: 208 IQLQHQCALSLRRFEAIH--HELNKATAQNKDLQWEMELLQSELTELRTTQVKTAKESEK 265

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
               +D      Y   + +R Q + +  K  TE        K +   +         ++ 
Sbjct: 266 YREERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAANEEMEALRQ 324

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                 +    + +E  +L                         + + L   L     E 
Sbjct: 325 IKDTVTMDAGRANKEVEILR-----------------------KQCKALCQELKEALQEA 361

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 362 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 418

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+   +   +  +   L++ 
Sbjct: 419 DVSRELKELKEQME--SQLEKEARFRQLMAH 447


>gi|71023657|ref|XP_762058.1| hypothetical protein UM05911.1 [Ustilago maydis 521]
 gi|46101623|gb|EAK86856.1| hypothetical protein UM05911.1 [Ustilago maydis 521]
          Length = 1250

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 71/205 (34%), Gaps = 17/205 (8%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            +R    +   D+  + +           +   + ++      P  R   S   +  L  
Sbjct: 110 IVRDLREEEFGDKEDETWWAGNNALDQVEQAAIRMSQQLSTSQP--RTSTSKPARTALRS 167

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                 + L+ T    PA+  +   E    R  N+EL+KL + +       K    +E  
Sbjct: 168 AQDRSWSPLVSTRPPDPALAADHSAE-DHERVTNDELEKLRAEVEQLRAAHKAH--KETV 224

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            RL +  +        +    A +    T+ N+ + +   ++ +   +    L R +++ 
Sbjct: 225 DRLKQETYR-------KSGEVAVVRQNLTKLNLENSKLREREVVREQEHRTTLERLQKDQ 277

Query: 599 EKQIAQVTAKG-----EAEKTAILI 618
           E+++ ++  +      E + +  + 
Sbjct: 278 ERRLQRLETETAFRRVEQDTSRRIW 302


>gi|327395432|dbj|BAK12854.1| MscS mechanosensitive ion channel YjeP [Pantoea ananatis AJ13355]
          Length = 1111

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 76/221 (34%), Gaps = 22/221 (9%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL--TLINHP 495
             + + S   +  ++    ++    ++++         LS++    E A      + + P
Sbjct: 22  ASLPDASQLKQQLEEVKATKNAPSQTEQIQSLEAALASLSERDDALERAQQYQQVIDDFP 81

Query: 496 AILQEQYQELADI--------------RYDNNELQKLWSFLFSDFVEQKYFLPE-EIHQR 540
            + +E  Q++A +                +   LQ     +      Q+      EI   
Sbjct: 82  RLARELRQQIATLNDNAKTVRSTMTSAELEQEILQISSQLIEEGRQAQQEQDRAREISDS 141

Query: 541 L-----CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           L      +      L + +R+++ AG  +       +  RQ    A         L++  
Sbjct: 142 LSQLPQQQTEARRALTESERRLQSAGSAATPVGQAQLVARQAENAANKAKVDEYELAQLS 201

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +++A++ A+    K   L + L  +  Q+++   +EA
Sbjct: 202 ANNRQELARMRAEVHQRKVTQLDNYLQALRNQLNEQRQREA 242


>gi|320102100|ref|YP_004177691.1| hypothetical protein Isop_0549 [Isosphaera pallida ATCC 43644]
 gi|319749382|gb|ADV61142.1| hypothetical protein Isop_0549 [Isosphaera pallida ATCC 43644]
          Length = 549

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 72/233 (30%), Gaps = 22/233 (9%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + +  R +QL +K            +   R +  + P  +    + +   +     
Sbjct: 188 DDLKKRLAQRREQLDEKQAETAKVLAEIEQGLDRLKKPEAPQSQEQALANLNKLIDVAKQ 247

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            RE       +     +  Q + +A +  +    ++L   L +   E+     + + ++L
Sbjct: 248 RREQ------LESVENMARQMERMAALSQEGPA-EQLAKDLANGDPEKAAETVKTLVEKL 300

Query: 542 ---------CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                     ++     L+++ +++R         +      + G        +    L 
Sbjct: 301 TKPNEMSARDKQALTNQLQEMSKELRKQANLEEKRKQLDEARKSGAISQQEFDREMAKLD 360

Query: 593 RQKEEIEK------QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           RQ+  +++      Q+AQ                L     Q+ ++    + IE
Sbjct: 361 RQQANLDQLKTMADQLAQAAEAMRQGDMQKAAQQLQMSQAQLEEMAQALSEIE 413


>gi|254409831|ref|ZP_05023612.1| hypothetical protein MC7420_7464 [Microcoleus chthonoplastes PCC
           7420]
 gi|196183828|gb|EDX78811.1| hypothetical protein MC7420_7464 [Microcoleus chthonoplastes PCC
           7420]
          Length = 513

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 77/210 (36%), Gaps = 30/210 (14%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           L +  ++ + +     R  +   R  +     ++ ++  L K +  +             
Sbjct: 67  LSESLREGVFQLDNILRQLRHARRDVEVVNAQKQQVEGELAKTRAEQA------------ 114

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
                   +  Q L ++   N+  QK  + L     +       EI   L ERG  +L++
Sbjct: 115 --------KVQQRLDEL---NSNFQKAQAQLRDISKQASNL-RSEIQSLLAERG--QLIE 160

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--KG 609
           Q ++   D             ++ +  QQ     +     ++Q  E E+++AQ     + 
Sbjct: 161 QRNQLRADISQLKELVAQRDQELEETSQQLALKNQELEQRNQQLREKEQELAQKDNVIET 220

Query: 610 EAEKTAILISILHEVHIQIHQIE--SQEAM 637
            AE+ A L   + +   ++ +++   QEA+
Sbjct: 221 MAEREARLQEAIAQREARLQELQAELQEAI 250


>gi|126322954|ref|XP_001364193.1| PREDICTED: similar to plectin 11 isoform 1 [Monodelphis domestica]
          Length = 4690

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 89/275 (32%), Gaps = 14/275 (5%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI---KD 417
               +       ++L  E    +    + E E        E            N +   KD
Sbjct: 2337 DHQKDILDEELQRLKEEVTDAMRQKTQVEEELFKVKIQMEELVKLKARIEEENKMLILKD 2396

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +     +     ++++Q+ ++            +      +     + L +  L +   +
Sbjct: 2397 KDNTQKFLVEEAEKMKQVAEEAARLSVEAQEAARLRKLAEEDLAQQRALAEKMLKEKMQA 2456

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             + + R  A    L     + QE  ++L + +  +   Q+L         E + F     
Sbjct: 2457 VQEATRLKAEAEMLQKQKDLAQEHAKKLQEDK--DQMEQRLAQ-------ETEGFQKTLE 2507

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             +R  +       ++L   V +  L  A  E +    ++  ++      R  L +R+K  
Sbjct: 2508 AERRRQLEMSAEAERLKLHVTEMSLAQAKAEEDARKFKKQAEEIGEKLHRTELATREKMT 2567

Query: 598  I--EKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            +    +I +  +  +A+K    I+ L     ++ +
Sbjct: 2568 LVHTLEIQRQQSDKDADKLKDAIAELEREKEKLKR 2602



 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 66/232 (28%), Gaps = 40/232 (17%)

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
             E     R   + A  R ++     + +      +  ++ +  E  L    +        
Sbjct: 2280 AELEAAKRAQAEQAALRQKQAADAEMEKHKKFAEQTLRQKAQVEQELTKVKLQ------- 2332

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ---- 556
              +        + ELQ+L   +     ++     E    ++      +L  +++ +    
Sbjct: 2333 LEETDHQKDILDEELQRLKEEVTDAMRQKTQVEEELFKVKIQMEELVKLKARIEEENKML 2392

Query: 557  -------------VRDAGLWSATTEANIVDVRQGYQQALA------LYKRFRLLSRQKEE 597
                              +     EA  + V       L       L ++  L  +  +E
Sbjct: 2393 ILKDKDNTQKFLVEEAEKMKQVAEEAARLSVEAQEAARLRKLAEEDLAQQRALAEKMLKE 2452

Query: 598  IEKQIAQVTA--------KGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
              + + + T         + + +        L E   Q+ Q  +QE   EGF
Sbjct: 2453 KMQAVQEATRLKAEAEMLQKQKDLAQEHAKKLQEDKDQMEQRLAQET--EGF 2502



 Score = 37.2 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 71/230 (30%), Gaps = 18/230 (7%)

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            L+    Q + +   QL ++     +      +     ++ +   Q  +    V    ++ 
Sbjct: 1492 LKAEERQRLAEVEAQLEKQRQLAEAHAQAKAQAEREAQELQRRMQEEVARREVVAVDAQH 1551

Query: 480  PSLREAALLLTLINHPAI-----LQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYF 532
              L     L  L  +  +      Q+  +   +      E++ +   L            
Sbjct: 1552 QKLNIQQELQQLRQNSDLEIKAKAQQVEEAERNRLRIEEEIRVIRLQLETTERQKSGAES 1611

Query: 533  LPEEIHQRLCERGFG-----ELLKQLDRQVRDAGLWSATTEAN----IVDVRQGYQQALA 583
              + +  R  E         E  ++L RQV++        E      I   ++  ++   
Sbjct: 1612 ELQALRARAEEAELQKKQAQEEAERLRRQVKEESQKKRQAEEELRLKIQAEQEAAREKQR 1671

Query: 584  LYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQI 631
              +    L  Q EE E+++ Q   + E   +          EV +Q  ++
Sbjct: 1672 ALQALEELRLQAEEAERRMKQAEVEKERQVQVALETAQRSAEVELQSKRM 1721


>gi|83816476|ref|YP_445980.1| exonuclease SbcC, putative [Salinibacter ruber DSM 13855]
 gi|294507891|ref|YP_003571949.1| exonuclease SbcC [Salinibacter ruber M8]
 gi|83757870|gb|ABC45983.1| exonuclease SbcC, putative [Salinibacter ruber DSM 13855]
 gi|294344219|emb|CBH24997.1| exonuclease SbcC [Salinibacter ruber M8]
          Length = 1019

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 78/220 (35%), Gaps = 23/220 (10%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           QA + RL +         +   R  + +          +   +   +  K  ++    E 
Sbjct: 626 QACKQRLAETEVDAEAFEALQNRAAQFDRYADRLGEIERAAARREELAQKRDERDEKIEQ 685

Query: 486 ALLLTLINHPAILQEQYQE-------LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             L T ++   + ++  ++       +  + +D +  Q++   L     +        ++
Sbjct: 686 --LRTALDENRVAEDVQEDMEDLQAKIDALEFDPDRFQEIRERL-QALSDVPDRHNALVN 742

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            +     + E   ++  ++ DA       E    ++ +   +  +  +    +  ++E++
Sbjct: 743 AQENRTEWTEQRARIQERIEDA-------EGEKKELEERLAECESALEDKPEVVAEQEDV 795

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES-QEAM 637
            +Q+     + E E    L   L ++  Q+ Q  + QEA+
Sbjct: 796 SEQV-----EAEEETLTDLQQRLGKLDAQLEQAAADQEAL 830



 Score = 37.9 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 9/130 (6%)

Query: 519 WSFLFSDFVEQKYFLP--EEIHQRLCERGFGEL-----LKQLDRQVRDAGLWSATTEANI 571
              + +  +    +    +E      E    +      +++L+  + D   W A   A  
Sbjct: 167 RKEILTRILNLGRYEALEDEARDHWREAKERQQRAAAEVERLEAALEDVPDWEAERAAVQ 226

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHEVHIQIH 629
            D++   +    L  R + L++++  +E    +  +  +  A     +     E+     
Sbjct: 227 ADIKAQTEALSDLRDREKALTQKRANLEATAREAESIRESMASLDDRIEEHRDEIEALTA 286

Query: 630 QIESQEAMIE 639
           +IE  EA++E
Sbjct: 287 RIEEAEALLE 296


>gi|332261922|ref|XP_003280014.1| PREDICTED: LOW QUALITY PROTEIN: citron Rho-interacting kinase-like
           [Nomascus leucogenys]
          Length = 2047

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 86/276 (31%), Gaps = 16/276 (5%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
             +   +   EKL         +  K        ++ + + +    ++   N +KD    
Sbjct: 664 QAKERAERELEKLQNREDSSEGIRKKLVEAEERRHSLENKVKRLETMERRENRLKDDIQT 723

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+               +         +        GK+  K 
Sbjct: 724 KSQQIQQMADKILELEEKHREAQVSAQHLEVHLKQKEQHYEEKIKXXXXXXXXGKILSKH 783

Query: 481 SLREAAL---LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-YFLPEE 536
                A+   + +L      L E  +  A+         K    + S+  +QK Y   + 
Sbjct: 784 KAMINAMDSKIRSLEQRIVELSEANKLAANSSLFTQRNMKAQEEMISELRQQKFYLETQA 843

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                  R   E L+++  Q           E  + +V      +L   ++   L RQ  
Sbjct: 844 GKLEAQNRKLEEQLEKISHQDHSDKNRLLELETRLREV------SLEHEEQKLELKRQLT 897

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           E++  + +  +     +   L +    +  Q+ Q +
Sbjct: 898 ELQLSLQERES-----QLTALQAARAALESQLRQAK 928


>gi|326477318|gb|EGE01328.1| hypothetical protein TEQG_00381 [Trichophyton equinum CBS 127.97]
          Length = 1477

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 44/121 (36%), Gaps = 3/121 (2%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                 EQ+  L +E  Q+  E    +L  +  RQ  +        +  +  + +  +Q  
Sbjct: 1031 IRAKEEQEAALRQE--QQAQEAETEQLEDETRRQEEELAREKEAAQTRLKALEEQVRQG- 1087

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
             + K+ +   +Q+ E E +  +     +  +         E+  Q+  +  +E+  +  G
Sbjct: 1088 KIKKQEQKRRKQQAEQEAREKEAKLAAQRAELEAAQERERELQRQLESLGDEESSSDDEG 1147

Query: 643  K 643
             
Sbjct: 1148 P 1148


>gi|326472985|gb|EGD96994.1| actin cytoskeleton-regulatory complex protein PAN1 [Trichophyton
            tonsurans CBS 112818]
          Length = 1467

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 44/121 (36%), Gaps = 3/121 (2%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                 EQ+  L +E  Q+  E    +L  +  RQ  +        +  +  + +  +Q  
Sbjct: 1026 IRAKEEQEAALRQE--QQAQEAETEQLEDETRRQEEELAREKEAAQTRLKALEEQVRQG- 1082

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
             + K+ +   +Q+ E E +  +     +  +         E+  Q+  +  +E+  +  G
Sbjct: 1083 KIKKQEQKRRKQQAEQEAREKEAKLAAQRAELEAAQERERELQRQLESLGDEESSSDDEG 1142

Query: 643  K 643
             
Sbjct: 1143 P 1143


>gi|301773440|ref|XP_002922143.1| PREDICTED: plectin-1-like [Ailuropoda melanoleuca]
          Length = 4302

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 85/279 (30%), Gaps = 19/279 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       +RE    +    +  AEL          +  + 
Sbjct: 1554 QELIRLRAETEQGEQQRQLLEEELARLQREAAAATQKRQELEAELAKVRAEMEVLLASKA 1613

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +   +          +     ++    ++L +    + +   +
Sbjct: 1614 RAEEESRSTSEKSKQRLEAEASRFRELAEEAARLRALAEETKRQRQLAEEDAARQRAEAE 1673

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------FLFSDFVEQKYFL 533
              L E   L  +     +  E    L +   +N  L++L            +   Q    
Sbjct: 1674 RVLAEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKAD 1731

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             EE   +L +    EL                  E  +   RQ  ++ LAL   F   + 
Sbjct: 1732 IEERLAQLRKASESEL-----------ERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 1780

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             K E+E ++ ++ +  E    +   + L     +    +
Sbjct: 1781 GKAELELELGRIRSDAEDTLRSKEQAELEAARQRQLAAD 1819



 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 45/140 (32%), Gaps = 16/140 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+      +L  +++ + R   L         
Sbjct: 2048 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDKDNTQRF 2107

Query: 568  ---------EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
                     +      R       A   R      L++Q+   EK + +     +     
Sbjct: 2108 LQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2167

Query: 616  ILISILHEVHIQIHQIESQE 635
               + L +   ++ Q ++++
Sbjct: 2168 KAEAELLQQQKELAQEQARQ 2187



 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1519 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLVAEQELIRLRAETEQGEQQRQLLEEELA 1578

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1579 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1616



 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 79/259 (30%), Gaps = 22/259 (8%)

Query: 387  KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL---FQKYITEH 443
             +                   LK        + L  +Y   +RD         +  +   
Sbjct: 906  WQSLSRDMQLIRSWSLVTFRTLKPEEQRQALRSLELHYQAFLRDSQDAGGFGPEDRLQAE 965

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH----PAILQ 499
              Y    +   +          L    L + +      L +   +  +I        +L+
Sbjct: 966  REYSSCSRHYQQLLQSMEQELELTLGKLEQVRSLSAIYLEKLKTISLVIRSTQGAEEVLK 1025

Query: 500  EQYQELAD---IRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
                +L +   +     EL    + L       E +  + + +   L  RG  E+ ++L 
Sbjct: 1026 AHEDQLKEAQAVPATLPELDATKAALKKLRVQAEAQQPVFDALRDEL--RGAQEVGERLQ 1083

Query: 555  RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            RQ  +  +        +  + + +Q  LA   +  +  R+ E++ +Q+       +    
Sbjct: 1084 RQHGERDVEVERWRERVAPLLERWQAVLA---QTDVRQRELEQLGRQLRYYRESADP--- 1137

Query: 615  AILISILHEVHIQIHQIES 633
              L + L +   +  QI++
Sbjct: 1138 --LDAWLQDAKQRQEQIQA 1154



 Score = 37.2 bits (84), Expect = 8.0,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 91/303 (30%), Gaps = 28/303 (9%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R   + A      + L       + E E    +      E     +     ++ + 
Sbjct: 1575 EELARLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEA 1634

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R+        RL+ L ++   +         +     ++    +    S   + K   +
Sbjct: 1635 SRFRELAEEAARLRALAEETKRQRQLAEEDAARQRAEAERVLAEKLAAISEATRLKTEAE 1694

Query: 480  PSLREAAL----LLTLINHPAILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFL 533
             +L+E       L  L    A  + + +E A     +    L +L     S+   QK  +
Sbjct: 1695 IALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKASESELERQKGLV 1754

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             + + QR   R   E +  L      A    A  E  +  +R   +  L   ++  L + 
Sbjct: 1755 EDTLRQR---RQVEEEILALKASFEKAAAGKAELELELGRIRSDAEDTLRSKEQAELEAA 1811

Query: 594  QKEEIEKQIA----------QVTAKGEAEKTAILISILHEVHI---------QIHQIESQ 634
            ++ ++               Q +   E E      S L EV           ++ +   Q
Sbjct: 1812 RQRQLAADEEQRRREAEERVQKSLAAEEEAARQRKSALEEVERLKAKVEEARRLRERAEQ 1871

Query: 635  EAM 637
            E+ 
Sbjct: 1872 ESA 1874


>gi|262384533|ref|ZP_06077667.1| DNA primase [Bacteroides sp. 2_1_33B]
 gi|262293826|gb|EEY81760.1| DNA primase [Bacteroides sp. 2_1_33B]
          Length = 318

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 10/75 (13%)

Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA---L 80
          Y    ++  N      W   P  +E   SF  N  +  +Y F+    G  +   S     
Sbjct: 20 YSPVKQQGINL-----WYKSPLREETEASFKVNTERNQWYDFALGKGGGIIELTSHLYAT 74

Query: 81 LGCSFIESVQRLAAI 95
              +I  ++R+A  
Sbjct: 75 DHIPYI--LERIAEQ 87


>gi|262283378|ref|ZP_06061144.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|262260869|gb|EEY79569.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
          Length = 1404

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 12/84 (14%)

Query: 10 DLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68
          ++     I ++  +  ++  R   +    +       HD    S   +  K  +  FS H
Sbjct: 21 EIARSRDILDVANELNMELVRDGKDYRWKE-------HD----SLVISPDKNKWNWFSRH 69

Query: 69 VKGDHLSFLSALLGCSFIESVQRL 92
            GD ++ +  +   +F +++  L
Sbjct: 70 QGGDVIALIETIREINFNQAIDYL 93


>gi|257055183|ref|YP_003133015.1| ATPase with chaperone activity, ATP-binding subunit
           [Saccharomonospora viridis DSM 43017]
 gi|256585055|gb|ACU96188.1| ATPase with chaperone activity, ATP-binding subunit
           [Saccharomonospora viridis DSM 43017]
          Length = 846

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/221 (9%), Positives = 57/221 (25%), Gaps = 23/221 (10%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYG----------RYWKKNARHRDQKGPSQRLMQSSLVK 473
           Y     +R+ +L  +                                     L +  L  
Sbjct: 285 YRGDFEERMTKLLDELRKNQGKLIVFIDELHTVVGAGSSEGSMGAGNMLKPALARGELHI 344

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
              +     RE       I +    + ++Q +        +   +   L   +       
Sbjct: 345 VGATTLDEYREN------IENDPAFERRFQPILVPEPSVEDTVAILRGLRDQYEAHHQV- 397

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                 R  +          DR + D  L     +       +   +     +R R +  
Sbjct: 398 ------RFTDEALDAAATLSDRYISDRYLPDKAIDLIDQAGARVRMRTGRWSERVREMEA 451

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           + E++ +   Q  ++   E+ + L   + ++  ++ +   +
Sbjct: 452 RLEQLYRDRDQAVSEEHYERASALRDEIQDLRNRLEEERKE 492


>gi|197246428|gb|AAI68862.1| Tcerg1 protein [Rattus norvegicus]
          Length = 1077

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/355 (8%), Positives = 106/355 (29%), Gaps = 45/355 (12%)

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            L     ++ +  + +    +    + +    +   +        +   +          
Sbjct: 556 MLSIQKWQFSMSAIKEEQELMEEMNEDEPIKAKKRKRMSKKPFMWIARASLFRR---DDN 612

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +D DS      +   +     ++  ++   K+  +          +  E  L   +   +
Sbjct: 613 KDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPR 672

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
                  Y       L    +K + +     R  ++    +++   ++   +  + + K 
Sbjct: 673 -------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKF 720

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           + + +  E A              +++ +  +     + + L++   +   +++    + 
Sbjct: 721 NPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKEDSKT 769

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQALALY 585
             +++    F  L                  E++             D+ + Y + +A  
Sbjct: 770 RGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKN 829

Query: 586 K---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
               + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 830 LDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 879


>gi|194887946|ref|XP_001976835.1| GG18567 [Drosophila erecta]
 gi|190648484|gb|EDV45762.1| GG18567 [Drosophila erecta]
          Length = 1428

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 4/127 (3%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ---LDRQVRDAGLWSATT 567
            N EL++L   L    VE++          L E+    L ++   L  ++ +    +   
Sbjct: 275 QNEELEQLRLVLAKAEVEKEKVDAVPEGDSLKEQENSRLQREVLVLRERLTELENINDLL 334

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           E    ++++    A    +R   L +++E+         A  +A+ +A L   L E+  Q
Sbjct: 335 ETTRCELQEELTTA-RERQRDLDLEQEQEKFSSSPQSEAASTDAQVSAELAKQLQELTNQ 393

Query: 628 IHQIESQ 634
           + ++++ 
Sbjct: 394 LTELQAT 400



 Score = 37.9 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 87/271 (32%), Gaps = 31/271 (11%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R         L+  +   +        E +     ++  E             D ++   
Sbjct: 323 RLTELENINDLLETTRCELQEELTTARERQRDLDLEQEQEKFSSSPQSEAASTDAQVSAE 382

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            ++ +++   QL +   T      +   +       +  SQRL +   ++  ++ +    
Sbjct: 383 LAKQLQELTNQLTELQATNEELRHQVAAQKKLEVSDESVSQRLEE---LEANIAAQLLEL 439

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E         +  + ++  +    +   N  L+ L   L      +  FL + +      
Sbjct: 440 EENKSAMAAQNEELAEKTTE----LNVLNVNLRLLEEKLLQSSRSKPIFLDDHLEDSAAS 495

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L+QL +++ +    +                          L  + ++ EKQ+ 
Sbjct: 496 KQMQEDLQQLKQKLDETNKANIK------------------------LKLKCKQAEKQLQ 531

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           ++ ++   ++ A L +   E+  +I  +E +
Sbjct: 532 KLQSQDGQQQLASLAADNEELQQRIAVLEDE 562


>gi|167841315|ref|ZP_02467999.1| putative chromosome segregation SMC protein [Burkholderia
           thailandensis MSMB43]
          Length = 547

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 45/366 (12%), Positives = 108/366 (29%), Gaps = 26/366 (7%)

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDP-GLRAAYKAIDLVLCHLIPGNRVNFVL 352
           + ++  + L       L     R ++    +     + A   +                 
Sbjct: 38  MQATSLSPLLNAIEENLLTPGVRDLISGKKEGHQAWQIALALLSRDQECRFDHVLEWRSS 97

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK----------RETENRSFNTPDERA 402
           LS  E P   +    +    + ++ ++   +   +          R  E    +   E  
Sbjct: 98  LSDSESPARGLNRTERLEALRALLNAIDPSEQTLRVDIAAMSESSRSQEQEIGHRAWEIR 157

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
           +L   L   +    D+  +      I  R  Q      T  +  G     ++  +  +  
Sbjct: 158 KLRKQLLEVLGVTDDELAQGALGVEILRRAAQERLAAETPSNSSGATPDIDSVRQAHESA 217

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ--EQYQELADIRYDNNELQKLWS 520
              + +     GK        E A+      HP ++   ++ +       +    + L S
Sbjct: 218 QAEVARIQADIGKQEAVIPAIERAISAIKGEHPTLVYSLKEAENYPCPICEVPIDRVLAS 277

Query: 521 FLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
                 +  K    E    RL       +     L+     ++      A  + +     
Sbjct: 278 ---QCGLSHKVPDLEACKARLESGRKTLKDEQGRLESAQSLLKQLRPGLALAKQDAARKE 334

Query: 576 QGYQQALALYKR----FRLLSRQKEEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQ 630
           Q YQ  L L ++    +    +  +++E+  A +  +  AE +     + + +   +I  
Sbjct: 335 QRYQNLLKLREQRDGTWYAARKAVDDVERLAALLEQQQSAEARLDRHQTDIEQARERIGA 394

Query: 631 IESQEA 636
           +++Q A
Sbjct: 395 LQNQNA 400


>gi|114704212|gb|ABI75318.1| ROCK2 splice variant [Mus musculus]
          Length = 1444

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 101/288 (35%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 822  MSEKQIKQENNHLMEMKMNLEKQNTELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 881

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   +                 K  S++L +S   +    L K
Sbjct: 882  ELKEENEEKTKLCKELQQKKQDLQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 941

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 942  EKIMKELEIKEMMARHKQELTEKDTTIASLE---ETNRTLTSDVANLANE-----KEELN 993

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  +++ R    QA+     +  R   + R 
Sbjct: 994  NKLKDS--QEQLSKLKDEEMSAAAIKAQFEKQLLNERTLKTQAVNKLAEIMNRKEPVKRG 1051

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1052 SDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1096


>gi|85118791|ref|XP_965509.1| hypothetical protein NCU01878 [Neurospora crassa OR74A]
 gi|28927319|gb|EAA36273.1| predicted protein [Neurospora crassa OR74A]
          Length = 1120

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 54/132 (40%), Gaps = 15/132 (11%)

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           + L ++   ++  L EE+  RL E      + +++L +Q +         E     +++ 
Sbjct: 551 AELTAELQAEQARLKEEL-ARLQEELADKDQRIERLAKQRKTEEDLREEIENLQDSLKEI 609

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT------------AILISILHEVH 625
             + +   +R + L ++K+E++ +I ++  + EA  +              L     ++ 
Sbjct: 610 GFEHVETKQRLKELEQEKKELKARIDELEKEVEAAASTAQTNIKLQSEHESLRQEFDDLK 669

Query: 626 IQIHQIESQEAM 637
            +   ++S  A 
Sbjct: 670 QKSQTLQSDLAA 681



 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 72/213 (33%), Gaps = 12/213 (5%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           + L+Q F     +            +    +      ++  L K +   K   +EAA L 
Sbjct: 659 ESLRQEFDDLKQKSQTLQSDLAAAQQLAQSRYKDLTDLREVLQKAQPELKSLRQEAAALK 718

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFG 547
           T+    A      + L          + L + L         +    + +H ++ +    
Sbjct: 719 TVREELAARNADLRNLEKRE------KDLKADLVCAQRLAADRDGEIKALHDKVGQETNA 772

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQG--YQQALALYKRFRLLSRQKEEIEKQIAQV 605
            L  + +++V    L  +  E   +  R+    ++   + +    L  +  E+E+++ ++
Sbjct: 773 RLKLEDEKRVLGRDLRRSEAEKIEIAAREEKTARELQRVQEEANKLRPRIRELEEEVNRL 832

Query: 606 TAKGE--AEKTAILISILHEVHIQIHQIESQEA 636
             +G+   E+  +  S        +  +  Q A
Sbjct: 833 RKEGDMMREEVQLKSSQYTSAQNLLGSMRDQTA 865


>gi|308493423|ref|XP_003108901.1| CRE-EHS-1 protein [Caenorhabditis remanei]
 gi|308247458|gb|EFO91410.1| CRE-EHS-1 protein [Caenorhabditis remanei]
          Length = 852

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 9/147 (6%)

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR----LCERGFGELLKQLDR 555
           E  + L      N E+++L   + S  VE+K      +       +       L  +L  
Sbjct: 494 EIKEALEGE---NEEMRQLAEAIQSMVVERKTAEEAVVQLEADMTVKNSRIKNLQVELTT 550

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEK 613
                             +     Q   L    +    +KE+ EK++ Q+   AK   E 
Sbjct: 551 LESTVKQLERQKTEATRRLNDYDTQIEQLEAACKAQKEKKEDTEKRMQQIDEEAKNAEEC 610

Query: 614 TAILISILHEVHIQIHQIESQEAMIEG 640
            A     + E+  +I  +++Q   + G
Sbjct: 611 KANDEKEMEELKREIEMLDNQFKTVRG 637


>gi|225903402|ref|NP_036114.2| homer protein homolog 3 isoform 2 [Mus musculus]
          Length = 356

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 66/208 (31%), Gaps = 13/208 (6%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             RL +   +   E +  G     +         +    +  L + + +  P   E   L
Sbjct: 112 AARLAREKSQDGGEFTSTGLALASHQVPPSPLVSTNGPGEEKLFRSQSADTPGPTERERL 171

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +++  ++ + Q++        +   Q+L   L         +  +   QR       +
Sbjct: 172 KKMLSEGSVGEVQWEA-EFFALQD-SNQRLAGALREANAAATQWRQQLEVQRAEAELLRQ 229

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            + +L+ QV    + +   EA    V Q       L  R +   +  +       +    
Sbjct: 230 RVAELEAQVAVEPVRAGEKEATSQSVEQ-------LEARVQTKDQTLKNQSTGTREAPDT 282

Query: 609 GEAEKTAILISILH----EVHIQIHQIE 632
            E E+T   +  L     E+  Q+  +E
Sbjct: 283 AEREETQQQVQDLETRNAELEQQLRSME 310


>gi|170589679|ref|XP_001899601.1| myosin heavy chain [Brugia malayi]
 gi|158593814|gb|EDP32409.1| myosin heavy chain, putative [Brugia malayi]
          Length = 1957

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +++R  Y    +       +K     +       +    RD      +  + S     LS
Sbjct: 1672 EEIREQYLNMEKKATLLQSEKEEMSVAMDQAERTRKQSERDANEAHVQCNELSAQAESLS 1731

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  E  LL    +    L E        +  +++  +L   L     ++     + I
Sbjct: 1732 SVKKKLETELLAIQADLDETLNEYKASEERYKAASSDAARLAEQLRQ--EQENSLQNDRI 1789

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKRFRLLSRQKE 596
             + L  +   E+  +LD     A        A +   +R+   +     +R++  ++   
Sbjct: 1790 RKALESQ-LKEMQARLDEAEAAALKGGKKVIAKLESRIRELESELDGEQRRYQETNKSLT 1848

Query: 597  EIEKQIAQVTAKGEAEK---------TAILISILHEVHIQIHQIES 633
            + E++I ++  + + ++            L + L     QI + E 
Sbjct: 1849 KHERRIRELQFQVDEDRKNAERTRDLIEKLQNKLKSQKKQIEEAEE 1894


>gi|160894479|ref|ZP_02075255.1| hypothetical protein CLOL250_02031 [Clostridium sp. L2-50]
 gi|156863790|gb|EDO57221.1| hypothetical protein CLOL250_02031 [Clostridium sp. L2-50]
          Length = 446

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 26/75 (34%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K        E +++ ++I     + +    L    + + +   L+  +   F E     
Sbjct: 7   RKKQPYNLDAEQSVIGSMIMDRDAIVDVSDILTKDDFYSAQNAILYENMIELFKEGMAVD 66

Query: 534 PEEIHQRLCERGFGE 548
              ++ RL E+   E
Sbjct: 67  LITLNNRLREKNVPE 81


>gi|118091925|ref|XP_421329.2| PREDICTED: similar to golgin-84 [Gallus gallus]
          Length = 735

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 79/212 (37%), Gaps = 8/212 (3%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            +R     +K   E     +  K       Q+    +   + +++ K     SL+E + +
Sbjct: 400 AERKYLDEKKRADELQQQVKVTKNQLESAKQELADYKQKATRILQSKEKLINSLKEGSGI 459

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             L +  A   E  +   +      E+QKL   +     E +    +++ +        E
Sbjct: 460 EGLDSQTASTMELEELRHERDTQREEIQKLMGQIQQMRTELQDMETQQVSEA---ESVRE 516

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTA 607
            L+ L  Q+    +     EA +   +Q  +     LY+    L  + ++ E++I ++  
Sbjct: 517 QLQDLQEQIAAHKMAKQEAEAELERQKQELRYTEEELYRTKNTLQSRIKDREEEIQKLRN 576

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +   +  +       E+  ++HQ+   E +I+
Sbjct: 577 QLTNKALSSSSQ--TELENRLHQL--TETLIQ 604


>gi|74006425|ref|XP_855595.1| PREDICTED: hypothetical protein XP_850502 [Canis familiaris]
          Length = 3557

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 48/423 (11%), Positives = 117/423 (27%), Gaps = 22/423 (5%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +     ++      ++L N    LN + K   +
Sbjct: 2401 ELITAAQNLKNKTSNQEARTIITDRIERI----QSQWDEVQEHLQNRRQQLNEMLKDSTQ 2456

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +A             T+   + L +    + +  D  
Sbjct: 2457 WLEAKEEAEQVLGQARAKLESWKEAPYTVDAIQKKITETKQLAKDLRQWQINVDVANDLA 2516

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2517 LKLLRDYSADDTRKVHMITENINASWASIHKRLSEREAALEETHRLLQQF-PLDLEKFLA 2575

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 2576 WLTEAETTANVLQDATHKERLLEDSKGVRELMKQWQDLQGEIEAHTDIYHNLDENGQKVL 2635

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2636 RSLEGSDDAALLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 2695

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2696 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 2754

Query: 550  -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             L Q  R++         T        +   Q   L        R+ +E  +++ ++   
Sbjct: 2755 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTQWEKLNVHSADWQRKIDEALERLQELQEA 2814

Query: 609  GEA 611
             + 
Sbjct: 2815 TDE 2817



 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 85/265 (32%), Gaps = 28/265 (10%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
             +    L  + K+  N  ++      +       L +  +K   +     +  K      
Sbjct: 1547 EEWLNLLLEYQKHMENFDQNVDYITNWIIQADALLDESEKKKPQQKEDILKRLKAEMNDI 1606

Query: 458  DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT-----LINHPAILQEQYQELADIRYDN 512
              K  S R   ++L+  +      + E  +         I+H     +    L ++   N
Sbjct: 1607 RPKVDSTRDQAANLMANRGDHCRKVVEPKISELNHRFAAISHRIKTGKASIPLKELEQFN 1666

Query: 513  NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEA 569
            +++QKL   L ++  +      E+ ++ + E       ELL++ D   +         E 
Sbjct: 1667 SDIQKLLEPLEAEIQQGVNLKEEDFNKDMSEDNEGTVKELLQRGDNLQQRITDERKREEI 1726

Query: 570  NIVD--------------------VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
             I                        +   Q     ++   L +  ++IEK++A +    
Sbjct: 1727 KIKQQLLQTKHNALKDLRSQRRKKALEISHQWYQYKRQADDLLKCLDDIEKKLASLPEPR 1786

Query: 610  EAEKTAILISILHEVHIQIHQIESQ 634
            +  K   +   L +   +++ +  Q
Sbjct: 1787 DERKIKEIDRELQKKKEELNAVRRQ 1811


>gi|33241284|ref|NP_876226.1| DnaB replicative helicase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33238814|gb|AAQ00879.1| Replicative DNA helicase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 471

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 67/198 (33%), Gaps = 19/198 (9%)

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL---REAALLLTLINHPAILQEQYQEL 505
             +K + ++          QS   +G+    P      E A++  ++  P  +      +
Sbjct: 8   KNEKPSNYQGINSKHYENSQSRGFEGQQDLVPPQNLEAEEAVIGGILLDPDAINRIADLV 67

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE-------LLKQLDRQVR 558
               +  +  +K++        + K      +   L + G  E       L++ +++   
Sbjct: 68  QAEAFYLSAHRKIFRTALMLNSQGKPTDLTSMSAWLADTGELESIGGNNRLVELVEKISS 127

Query: 559 DAGLWSATTEANIVDVRQGYQ----QALAL-YKRFRLLSRQKEEIEKQI----AQVTAKG 609
            A +           +R+       + + L + +   +    ++ E++I     +  +KG
Sbjct: 128 TASIEQVAKLITDKFLRRQLIRSGNEVIKLSFDQSMPMEELLDKAEQKIFSISQEKPSKG 187

Query: 610 EAEKTAILISILHEVHIQ 627
                 IL S  +E+  +
Sbjct: 188 LIPTAEILTSTFNEIESR 205


>gi|5870866|gb|AAD54608.1| TATA element modulatory factor [Homo sapiens]
          Length = 1093

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 62/175 (35%), Gaps = 7/175 (4%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +   Q      KL+     +E  L    ++   + ++     A +     EL  L  
Sbjct: 613 GKEEVEKQHRENIKKLNSMVERQEKDLGRLQVDMDELEEKNRSIQAALDSAYKELTDLHK 672

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +  +        + + +  +   EL   L++   +A     T    + D+R   Q+
Sbjct: 673 A---NAAKDSEAQEAALSREMKAK--EELSAALEKAQEEARQQQETLAIQVGDLRLALQR 727

Query: 581 -ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              A  ++   L  +  E+++++ +   +   E +  + S    +  QI  +++ 
Sbjct: 728 TEQAAARKEDYLRHEIGELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 781


>gi|195388517|ref|XP_002052926.1| GJ19558 [Drosophila virilis]
 gi|194149383|gb|EDW65081.1| GJ19558 [Drosophila virilis]
          Length = 1983

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 72/227 (31%), Gaps = 28/227 (12%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             +  +L Q  +    E    G   + +          +   QS+      + +  + +  
Sbjct: 1230 QLEQQLPQEAEPQTIEQLKDGEILQNHTNTISSTNEDRNDTQSTGTIQPDTAEDIVAQNP 1289

Query: 487  LLLTLINHPAILQEQYQELADIRYDNN------ELQKLWSFL-----------FSDFVEQ 529
             L   +++  +    Y+ LA     N+      ELQ L   +            S    +
Sbjct: 1290 ALKCYVDNGYL---NYERLAKCLETNDKWQEQKELQTLGLAIVVQYMSKQMDMLSCQESK 1346

Query: 530  KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 EE    L +       ++L +Q+ +  +  A  +     +++   Q      +  
Sbjct: 1347 AKSTLEETIALLQQTQHS--CEELRQQLHEKDVEWAQRQQEREHLQRTELQQAQEKVQEV 1404

Query: 590  LL--SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             L    +  E+E Q+       + EK   L +   E+  Q+   + Q
Sbjct: 1405 QLIAKERFRELESQLQ----AKDEEKKEALQAYHQEIAHQLRHKQQQ 1447



 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 80/277 (28%), Gaps = 43/277 (15%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI--KDQKLRYY---YSQAIRDR 431
            +     + L + E +       + +   +   +   + +  KD++ +     Y Q I  +
Sbjct: 1381 QRQQEREHLQRTELQQAQEKVQEVQLIAKERFRELESQLQAKDEEKKEALQAYHQEIAHQ 1440

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLT 490
            L+   Q+         +   +   H  Q+    ++L +            + RE  L   
Sbjct: 1441 LRHKQQQLTFAEQQVLQLQTRLQEHEAQEQQLREKLTRKENTHAIRLAASTQREEEL--- 1497

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                        + +  +     ELQ L +       E       +    L +     L 
Sbjct: 1498 -----------QERIKTL---TKELQTLRAS-----TEHNERDLRDRLA-LSQDEISVLR 1537

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR--LLSRQKEEIEKQIAQVTAK 608
                R+         + E   +       + +   K+     LS+Q  E++++  +    
Sbjct: 1538 SSSQRRSPSNSQADTSAELCRLTSEADSLRCVLELKQAEISALSKQNAELQRENDEQRGL 1597

Query: 609  GEAEKTAILISIL------------HEVHIQIHQIES 633
            G         + +             ++  Q+ +++ 
Sbjct: 1598 GSRLTMLEAQNEMMRTELEAKTEKEKDIQRQMEEMQK 1634


>gi|220915084|ref|YP_002490391.1| hypothetical protein Mnod_7732 [Methylobacterium nodulans ORS 2060]
 gi|219952938|gb|ACL63325.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
          Length = 102

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 12/90 (13%)

Query: 18  SNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH-VKGDHLS 75
            +++ +++   RR       ++    P   ++   SF  N   G +  F+     GD +S
Sbjct: 20  EDIVRRWLPDGRR----EGAEWVCRNPLRSDRRAGSFKVNLRTGKWGDFATGNAGGDLIS 75

Query: 76  ---FLSALLGCSFIESVQRLAAIAGVPLPV 102
              FL      S  E+   +A + GV    
Sbjct: 76  LAAFLQ---SISQAEAAVAVAGMVGVDAYE 102


>gi|327310900|ref|YP_004337797.1| hypothetical protein TUZN_1003 [Thermoproteus uzoniensis 768-20]
 gi|326947379|gb|AEA12485.1| hypothetical protein TUZN_1003 [Thermoproteus uzoniensis 768-20]
          Length = 278

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 42/152 (27%), Gaps = 10/152 (6%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLDRQ 556
           + +  + L ++  ++     L                E +   L       +L K L  +
Sbjct: 5   VADLKRLLRELAREDPAF--LRDLFLEALRGDGRSAAELLDLMLSHEEVRLKLAKSLLGE 62

Query: 557 VRDAGLWSATTEAN-IVDVRQGYQQALALYKRFRLLSRQKEEIEKQ------IAQVTAKG 609
           V      +A  +   + +     +  +   +           +E        I ++    
Sbjct: 63  VAIPLNVAAKDDVRRLEEAVAAIRDDVRKLEAVMATRDDIRRLEGAMATRDDIKRLETAM 122

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
              +   L+         + ++E + A  E F
Sbjct: 123 ATREELKLLEEKMATKEDLRRLEDRMATKEQF 154


>gi|326669786|ref|XP_002663091.2| PREDICTED: centrosomal protein of 120 kDa-like [Danio rerio]
          Length = 995

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 16/125 (12%)

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV-------RQGYQ 579
            E K+   E+  Q+  ++       +L  ++    L     E  +          +Q + 
Sbjct: 812 AESKHRQLEKEFQQFRDQQSVRPEARLQSEINLLTLEKVELERKLESATKSKLHYKQQWG 871

Query: 580 QALALYKRFRL---------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +AL    RF+          L +Q++E+++   +  A  E E        L ++  Q+++
Sbjct: 872 RALKELARFKQREQESALCRLKKQQQELDQMRLRFLAAEEKETVKSDKQELQDIRNQLNR 931

Query: 631 IESQE 635
           ++ QE
Sbjct: 932 LKQQE 936


>gi|323692823|ref|ZP_08107050.1| TnpY protein [Clostridium symbiosum WAL-14673]
 gi|323503137|gb|EGB18972.1| TnpY protein [Clostridium symbiosum WAL-14673]
          Length = 582

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAG 97
            G  + F+    G SF E+VQ L   +G
Sbjct: 15 KGGYPIDFVMEFYGKSFPEAVQLLTGESG 43


>gi|313890274|ref|ZP_07823908.1| chromosome segregation protein SMC [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313121379|gb|EFR44484.1| chromosome segregation protein SMC [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 1181

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 100/268 (37%), Gaps = 15/268 (5%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
            +++L  E   L   +   +           +  LE   +    +   ++L    +Q ++
Sbjct: 214 EYKQLEGERQNLHLSILVADVRKDKQQLSQLQTSLEELQEGLAEYHHHRELLEAQNQKLK 273

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNAR-HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           ++ Q L ++  ++ +      +  A   +          Q +  K + S + +  E  + 
Sbjct: 274 EKRQALNRETESKQAELLELTRALADLEKQIDLIKLETSQKNEKKAEASSQIAELETEIS 333

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              I      +++ + L  +   + E  K    L  +  ++    P+++ ++L E    +
Sbjct: 334 TLRIAE----KQKVELLEQLAVSSRENAKALEELQENL-QRFSGDPDQLIEKLRE----D 384

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L  + ++   +   +  T     D ++   Q  A  ++ + +   ++E ++ +      
Sbjct: 385 YLALMQKEASLSNQLTLLTSEIEKDNQEQEHQLKAFSEQEKHVVMLEKEHQELLVAYN-- 442

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636
              E +  L  +L +   + +Q++ Q+A
Sbjct: 443 ---ECSQRLQELLQDYQTKRNQLQVQKA 467



 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 46/133 (34%), Gaps = 12/133 (9%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQR----LCERGFGELLKQLDRQVRDAGLWSAT 566
             + L +L   ++    +      +    R    L        L  L   VR      + 
Sbjct: 184 TQDNLDRLDDIIYELDTQVGPLEKQAKVAREYKQLEGERQNLHLSILVADVRKDKQQLSQ 243

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            + ++ ++++G  +     +     +++ +E  + + +        +T    + L E+  
Sbjct: 244 LQTSLEELQEGLAEYHHHRELLEAQNQKLKEKRQALNR--------ETESKQAELLELTR 295

Query: 627 QIHQIESQEAMIE 639
            +  +E Q  +I+
Sbjct: 296 ALADLEKQIDLIK 308



 Score = 37.9 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 87/290 (30%), Gaps = 25/290 (8%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ----- 418
            R          + +          +  +N      +   + +  L   I  IK       
Sbjct: 739  RLADSQEILANMTKMQSQNRERDFQTEKNDLEQELEVINQRKEALSQEIESIKSNKDTIN 798

Query: 419  KLRYYYSQAIRD-RLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            + +   ++ +   RL Q                 +K  + +++K    + + SS +  + 
Sbjct: 799  QKKAALTEELAQARLSQRDLANEKRFEETDLNRLEKERQTKEEKVTQLKDLLSSHISEED 858

Query: 477  SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
              +    E  LL           +  Q+L  +R++  + Q     L     +++      
Sbjct: 859  IDRLPSLEEGLLEIA----ERKTQVEQKLVGLRFETEDYQAQLEELEVKLQQEQSKSEMF 914

Query: 537  IHQRLC-ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            I Q+   E    ++  +L    +        +     D             +   L RQ 
Sbjct: 915  IRQQSKLEAEQEQVSARLRTHAKVLAEDFQLSFEEAQDKSHQVDDLAQAKDKLAKLRRQI 974

Query: 596  EEI----EKQIAQVTAKGEAEKTAILISILHEVHI-------QIHQIESQ 634
            + +       IAQ      +E+   L+    +++         IHQ++S+
Sbjct: 975  KALGPVNTDAIAQYEEV--SERLTFLLGQKEDLNKAKNMLLDTIHQMDSE 1022


>gi|301607319|ref|XP_002933247.1| PREDICTED: daple-like protein-like [Xenopus (Silurana) tropicalis]
          Length = 2058

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/294 (10%), Positives = 97/294 (32%), Gaps = 25/294 (8%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD----QKLR 421
             K    + +       +   K   +     +    A  +    +    +KD     K+ 
Sbjct: 535 KEKDLLSQAVENIKSEKERQIKELEQENKHLSQTLEAVRQRSQVSTEARVKDIEMENKIL 594

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           +   +    +L +L  +       + +  ++  +    +    RL + + +  K     +
Sbjct: 595 HETIKDTSSKLNELEYEKKQLQKAFDQAKEQVEKVDKMENELHRLEKQNEILTKKVTSIT 654

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           + E   +  L     +L+E    +     D  +   +   +  +  +Q      E+ + +
Sbjct: 655 IVEEK-MQALEKENGVLEE-ENIVLKKSLDTLQNVTIRLEVLENENKQLDEENFELRRAV 712

Query: 542 C------------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                        ER   ELLK+ +   ++  L  A  + +   +   YQ       R +
Sbjct: 713 EAMRFSCTKITQIERENNELLKEKEELQKNVELLKALGKKS-ERLEVSYQGLSDENWRLQ 771

Query: 590 LL----SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +    +++ ++++K++     + +       +  L   + ++ ++E +    +
Sbjct: 772 QMLDNGNKKIDDLQKELQDTEKENKD--LQKTLEELKICNKRLERMEEENKAKD 823


>gi|288817659|ref|YP_003432006.1| chromosome segregation ATPase [Hydrogenobacter thermophilus TK-6]
 gi|288787058|dbj|BAI68805.1| chromosome segregation ATPase [Hydrogenobacter thermophilus TK-6]
 gi|308751257|gb|ADO44740.1| chromosome segregation protein SMC [Hydrogenobacter thermophilus
           TK-6]
          Length = 1154

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 100/328 (30%), Gaps = 58/328 (17%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                + A   L    L L +     +          E        +   N ++D  ++ 
Sbjct: 170 YEEKKQKALADLGEVELKLREFRLLIDEMEVQMERLSEDVRKLRRYRELENTLRDLHIKL 229

Query: 423 YYSQAIR-----DRLQQLFQKYITEHSGYGRYWK-----KNARHRDQKGPSQRLMQSSLV 472
              +A       + LQ L ++   E        K        R  + +  + +L+     
Sbjct: 230 LMKEAKATSQSIENLQALIEERKKELLEIREKLKVLELEYQQREEELRSVNDQLLPFREK 289

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
            GK+S      E ++          ++++ +   +I    + L+ L + L +   E+K+ 
Sbjct: 290 LGKISSDIEYLEKSI-------KEAIKKREETQEEILRSESHLRSLRANLETLLEEEKHI 342

Query: 533 LP----EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV---------DVRQGYQ 579
                 +E      E     L   L  +     +     +A            D ++   
Sbjct: 343 NSLITQKERQISAKEEEAKALYSALKSKEERLKVSLEEAQATQEKISIIRKDLDSKKRLL 402

Query: 580 QALALYKRFRLLSRQ------------KEEIEKQIAQVTAKGE----------------A 611
            ++ +  R   L R+            KE+++ Q+ +   K E                 
Sbjct: 403 SSIDIKLREMDLKRERIMEEMQRLREEKEKLKSQMGENILKMENYRKMQKEEEVSLRKKK 462

Query: 612 EKTAILISILHEVHIQIHQIESQEAMIE 639
           ++   L   L  +  +  ++  ++AM+E
Sbjct: 463 QELESLEERLRRIRKEREELIKEKAMLE 490


>gi|269123511|ref|YP_003306088.1| replicative DNA helicase [Streptobacillus moniliformis DSM 12112]
 gi|268314837|gb|ACZ01211.1| replicative DNA helicase [Streptobacillus moniliformis DSM 12112]
          Length = 463

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 49/139 (35%), Gaps = 5/139 (3%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E ++L +++  P +L E    L+   + +   + ++  +     E+     +     +  
Sbjct: 14  EQSILGSILIDPNLLSEITPLLSPNDFYSITNKLVYEAMLKYVDEKDNLDLDV---YVLS 70

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI- 602
                   +L++      L +    A        Y   +  Y + R LS     I +Q+ 
Sbjct: 71  EILKTQ-NRLEKIGGLDYLLNLVESAYSSANSLIYLDIILEYSKKRKLSDLARNIHEQLY 129

Query: 603 AQVTAKGEAEKTAILISIL 621
               +K   E + + IS L
Sbjct: 130 NNEDSKNILENSQLEISKL 148


>gi|195481228|ref|XP_002101567.1| GE17706 [Drosophila yakuba]
 gi|194189091|gb|EDX02675.1| GE17706 [Drosophila yakuba]
          Length = 556

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           +   L    +E       E             +K++  ++     +++     +  V   
Sbjct: 418 IEQRLKKTLIENGLIDASEFAAHEDVDEVLLEIKRVTTEISSISQFNSEELKRLRAVASE 477

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAK------GEAEKTAILISILHEVHIQIHQI 631
             + +A+ ++   + ++  E  K++ Q  AK       E ++   L +    +  Q+ ++
Sbjct: 478 EIKRIAIKRKLDTVDQEILECYKRMLQYRAKRKGHTIEEKQEILRLTNEQRLLADQLERM 537

Query: 632 ESQEAMIEGFGKM 644
           +     I G G  
Sbjct: 538 QMHLPCIGGAGSS 550


>gi|171689204|ref|XP_001909542.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944564|emb|CAP70675.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1736

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 85/255 (33%), Gaps = 13/255 (5%)

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
                +      +     +   +  + Q++     QAI DRL+        +     R  
Sbjct: 415 AEFHLSETLNTVQYAQRARAIQSKPRIQQVEEGDKQAIIDRLKAEVAFLREQI----RSA 470

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
           ++    R    P +R  + S  + +L  +    +         H  ++ E  +   + + 
Sbjct: 471 ERGGGERRTLAPGERPERQSEREVELQNQLLDAQENYTALSQRHAKLIAELARARDEEQL 530

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
           +N   + L             F        L    + + ++ L++ +       ++TE +
Sbjct: 531 ENQLEKNLGDSATERLNRSNSFAQAVEQVVLE---YEKTIQSLEQSLASTRATLSSTEGS 587

Query: 571 IVDVRQ--GYQQALA--LYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEV 624
           +++      Y + +   L  R + L  ++   E  +  +  K +          +I+ E+
Sbjct: 588 LLEKESNCAYAETINNQLQARLQKLMDREANTESYLHDLETKLDGHTSGEEKNTAIIMEL 647

Query: 625 HIQIHQIESQEAMIE 639
             +I ++   EA  E
Sbjct: 648 RKEIARVRENEAACE 662


>gi|182419856|ref|ZP_02951096.1| hypothetical protein CBY_4020 [Clostridium butyricum 5521]
 gi|237666893|ref|ZP_04526878.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182376404|gb|EDT73986.1| hypothetical protein CBY_4020 [Clostridium butyricum 5521]
 gi|237658092|gb|EEP55647.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 831

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 53/179 (29%), Gaps = 23/179 (12%)

Query: 4   PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-------SFHCN 56
             +  +     I +   I           N              +  P       +F  +
Sbjct: 2   SNEIFERAKREINLLAYIESTCHVKVSGRNGKWNI---------DPNPIDTRTKNNFKVS 52

Query: 57  DSKG--FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVVDPKIEKK 110
              G   Y  F+    G  + FL      S  + +Q+L  + G    + +P +  +    
Sbjct: 53  LKNGVWLYNSFNSDEGGTIIDFLKEKERLSDEQILQKLNDLLGNTELLEVPQIATEKLHS 112

Query: 111 EKIQTDLIRLIEVAT-DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS 168
           +K    L+  I+++  ++F +   + +  + +         +    +  +   P  +  
Sbjct: 113 QKDINKLVEKIDISNIEYFKNMGISEKVIKKYGLGVSENGITEMYSILGMKSHPKMKDH 171


>gi|158259915|dbj|BAF82135.1| unnamed protein product [Homo sapiens]
          Length = 782

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 46/120 (38%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 567 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 626

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   +  +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 627 RREHAKAVVSLRHIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 686


>gi|88659206|gb|AAS44545.2| NUP-1 [Trypanosoma cruzi]
          Length = 3177

 Score = 42.6 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 52/136 (38%), Gaps = 7/136 (5%)

Query: 518  LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
            L + L S     +    E         G  E +++L++ +RDA        ++ + +R+ 
Sbjct: 2346 LAAQLSSALKTLEQLAEERETLARGSAGLEERVRELEQALRDAQTAHDVDSSDGLTLREQ 2405

Query: 578  YQQALALYKRFRLLS----RQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQI 631
               A A   +          +  E+   +A++ +  +A +     L + L E   ++ Q 
Sbjct: 2406 LAAAHAAIDQLSAERSAQAERVAELTAAVARLESSADAPERVVEALSAELRETQDRLRQA 2465

Query: 632  ESQEA-MIEGFGKMSG 646
            E + + + E  G   G
Sbjct: 2466 EEEASQLAERIGSSEG 2481



 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS----RQKEEI 598
                + +++L++++RDA        ++ + +R+    A A   +          +  E+
Sbjct: 871 SAELEKRVRELEQELRDAQTAHDVDSSDGLTLREQLAAAHAAIDQLSAERSAQAERVAEL 930

Query: 599 EKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQEA-MIEGFGKMSG 646
              +A++ +  +A +     L + L E   ++ Q E + + + E  G   G
Sbjct: 931 TAAVARLESSADAPERVVEALSAELRETQDRLRQAEEEASQLAERIGSSEG 981


>gi|329955552|ref|ZP_08296460.1| ATP-dependent chaperone protein ClpB [Bacteroides clarus YIT 12056]
 gi|328525955|gb|EGF52979.1| ATP-dependent chaperone protein ClpB [Bacteroides clarus YIT 12056]
          Length = 864

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 69/212 (32%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++    +      +  +++    + +      +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVMVNEPDTLSTISILRGLKERYENHHHVRIKDDAIIAAVELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      +     +          Q   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDQPKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           +     L     +      +  +Q    L  + +    + E ++ +  +   +G+  K  
Sbjct: 437 EQIGKELAELKEQEKSYKAK--WQSEKTLVNKIQQNKVEIENLKFEADKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L   + E   ++H+++  +AMI+
Sbjct: 495 EIRYGKLQALNQEIEETQQKLHEMQGDKAMIK 526



 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 70/264 (26%), Gaps = 34/264 (12%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + +  +DM              +    +   +K     I        
Sbjct: 220 RILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERLKAVINEVKKSEGDI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E    + ++N P  L                   +   L   +    +        R+ +
Sbjct: 328 ERRFQIVMVNEPDTLSTI---------------SILRGLKERYENHHHV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + D  L     +       +   +  ++ +    +SR+ +++E +  
Sbjct: 366 DAIIAAVELSNRYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIERE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQ 627
            +  + +  K   +   L E+  Q
Sbjct: 426 AIKRENDQPKLEQIGKELAELKEQ 449


>gi|313107348|ref|ZP_07793542.1| hypothetical protein PA39016_000930006 [Pseudomonas aeruginosa
           39016]
 gi|310880044|gb|EFQ38638.1| hypothetical protein PA39016_000930006 [Pseudomonas aeruginosa
           39016]
          Length = 948

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 84/233 (36%), Gaps = 19/233 (8%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R + S+ + +RL+ L ++              +     ++   Q + +   +        
Sbjct: 369 RQFSSEDLEERLRDLEKRLKNVRQQLEHADNNSYARLREEFSQQDVERLMRLFNGALFSL 428

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            L E  +    ++   +  +  + + D  +     +     +    +E            
Sbjct: 429 PLGENGV---NLDDGDVWVKSVEAILD-HFKGEHFEAPGLSIDLSHIEPPALQALADRAA 484

Query: 541 LCERG--FGELLKQLDRQVRDAGLWSA---TTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           L ++     + LKQL  Q   A   +A     E    DV    Q+AL  ++R + L+ ++
Sbjct: 485 LRDQKERLEKELKQLKTQQSVAADRAASKAQAEKLYQDVLDA-QKALEDFRRTQTLTAEE 543

Query: 596 EEIEKQIAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQEAMIE 639
            E   ++AQ+ A  +          E+   L + L  V  Q+  +E++E  +E
Sbjct: 544 PEKLAELAQLEASQDELKRSSDAFAERVQQLSARLQLVARQLGDLEAKERTLE 596


>gi|302793610|ref|XP_002978570.1| hypothetical protein SELMODRAFT_176984 [Selaginella moellendorffii]
 gi|300153919|gb|EFJ20556.1| hypothetical protein SELMODRAFT_176984 [Selaginella moellendorffii]
          Length = 870

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 73/210 (34%), Gaps = 16/210 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KY+ + +   R +++          +  +++    K +L     + + AL+   +   
Sbjct: 311 YRKYLEKDAALERRFQQVYVPEPAVEDTISILRGLREKYELHHGVKISDNALVEAAVLSS 370

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI--------HQRLCERGFG 547
             + +++     I   +    KL     S            I         +   ++   
Sbjct: 371 RYISDRFLPDKAIDLVDEAAAKLKMERTSKPTALDEIDRAIIKLEMERLSLEHDNDKASR 430

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E L++L+ ++          +     ++Q ++   ++  R      + + +  +I Q   
Sbjct: 431 ERLQKLEAELASL-------KEKQKALQQQWEMEKSIMTRINSCKEEIDRVNLEIQQAER 483

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEA 636
             +  + A L   +L  +  Q+ + E + A
Sbjct: 484 DYDLNRAAELKYGVLINLQKQLKETEGELA 513


>gi|256682103|gb|ACV07677.1| NUP-1 [Trypanosoma cruzi]
          Length = 2577

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 52/136 (38%), Gaps = 7/136 (5%)

Query: 518  LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
            L + L S     +    E         G  E +++L++ +RDA        ++ + +R+ 
Sbjct: 1746 LAAQLSSALKTLEQLAEERETLARGSAGLEERVRELEQALRDAQTAHDVDSSDGLTLREQ 1805

Query: 578  YQQALALYKRFRLLS----RQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQI 631
               A A   +          +  E+   +A++ +  +A +     L + L E   ++ Q 
Sbjct: 1806 LAAAHAAIDQLSAERSAQAERVAELTAAVARLESSADAPERVVEALSAELRETQDRLRQA 1865

Query: 632  ESQEA-MIEGFGKMSG 646
            E + + + E  G   G
Sbjct: 1866 EEEASQLAERIGSSEG 1881



 Score = 40.6 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS----RQKEEI 598
                + +++L++++RDA        ++ + +R+    A A   +          +  E+
Sbjct: 871 SAELEKRVRELEQELRDAQTAHDVDSSDGLTLREQLAAAHAAIDQLSAERSAQAERVAEL 930

Query: 599 EKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQEA-MIEGFGKMSG 646
              +A++ +  +A +     L + L E   ++ Q E + + + E  G   G
Sbjct: 931 TAAVARLESSADAPERVVEALSAELRETQDRLRQAEEEASQLAERIGSSEG 981


>gi|168698986|ref|ZP_02731263.1| chromosome partition protein Smc [Gemmata obscuriglobus UQM 2246]
          Length = 1231

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 8/124 (6%)

Query: 521 FLFSDFVEQKYFLPEEIHQ--RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
            L       +      + Q  RL       L  +  R    A L  A    +  D     
Sbjct: 389 ELVRQAASGRSTADATLAQVNRLQSEYTRRLAAREHRAAHRATLTHALDGLSQEDA-DVQ 447

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            +  A  ++   L+  ++ + +Q+ +        +   L      +  ++  +E  E  +
Sbjct: 448 ARLAAAREQLDDLTAARDTLTEQLGEG-----QARLEGLRVEQGALRARMEVLEDLERSL 502

Query: 639 EGFG 642
           EGFG
Sbjct: 503 EGFG 506


>gi|114602552|ref|XP_518017.2| PREDICTED: transcription elongation regulator 1 isoform 6 [Pan
           troglodytes]
          Length = 1104

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 637 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 696

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 697 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 744

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 745 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 793

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 794 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 853

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 854 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 906


>gi|21327715|ref|NP_006697.2| transcription elongation regulator 1 isoform 1 [Homo sapiens]
 gi|158514955|sp|O14776|TCRG1_HUMAN RecName: Full=Transcription elongation regulator 1; AltName:
           Full=TATA box-binding protein-associated factor 2S;
           AltName: Full=Transcription factor CA150
 gi|119582245|gb|EAW61841.1| transcription elongation regulator 1, isoform CRA_b [Homo sapiens]
          Length = 1098

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 631 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 690

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 691 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 738

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 739 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 787

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 788 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 847

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 848 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 900


>gi|14520575|ref|NP_126050.1| chromosome segregation protein smc1 [Pyrococcus abyssi GE5]
 gi|5457791|emb|CAB49281.1| smc1 chromosome segregation protein [Pyrococcus abyssi GE5]
          Length = 1177

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 78/204 (38%), Gaps = 8/204 (3%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            L +  +K ++E        + + +  ++        +  + K +   +   R+   L  
Sbjct: 714 LLTRDIEKLLSEERIIKSEIEDSQKGIEEIDRIIHEKKGEIAKLRGKIERLERKRDKLKK 773

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGE 548
            + +P   +E  +++ ++  +  +L++  S + S        L EE+  R    E     
Sbjct: 774 ALENPE-AREVTEKIREVEGEIGKLREELSRVESRLESLNSRLNEELIPRKASLEEEIEG 832

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           L+ +++    +        +     + +   +  +++ +     R++EE+EK+I ++  +
Sbjct: 833 LVNKINALKANIAENEEVLKGLKGKLEELKAKEESVHSKISEYRRKREELEKEIRELRKE 892

Query: 609 GEAEKTAILISILHEVHIQIHQIE 632
                   L   + E  I+ + + 
Sbjct: 893 -----KEELSKRMQEFRIEANTLR 911



 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 55/145 (37%), Gaps = 7/145 (4%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           +E  + +  ++     L+     + S  VE +    +    R+      + +  L R + 
Sbjct: 664 RELKERVEKLKLRKEALEA---EINSLKVELRGLENQGFELRIKMSEIEKEITLLTRDIE 720

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKGEAEKT 614
                    ++ I D ++G ++   +    +     L  + E +E++  ++    E  + 
Sbjct: 721 KLLSEERIIKSEIEDSQKGIEEIDRIIHEKKGEIAKLRGKIERLERKRDKLKKALENPEA 780

Query: 615 AILISILHEVHIQIHQIESQEAMIE 639
             +   + EV  +I ++  + + +E
Sbjct: 781 REVTEKIREVEGEIGKLREELSRVE 805


>gi|327275953|ref|XP_003222736.1| PREDICTED: liprin-alpha-3-like [Anolis carolinensis]
          Length = 1199

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 87/277 (31%), Gaps = 34/277 (12%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
           + K + ++ +  +LP       +E         +   E+        N            
Sbjct: 63  HEKESLQRQLNIALPQEFAALTKELNLCREQLSEREEEISELKAERNNT----------- 111

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + + + L+ L  ++           +  +               SL +   +    +RE 
Sbjct: 112 RLLLEHLECLVSRHERSLRMTVVKRQAQSPAGVSSEVEVLKALKSLFEHHKALDEKVRER 171

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L   +   A+L+E      ++   N E   L   L            +    ++C  G
Sbjct: 172 --LRVALERVAVLEE------ELEMSNQESLSLREQLARRRSGLDDPSKDG-DGQICANG 222

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQ 604
            G L            L     E+ + +V +  +  L+ L +R  +L RQ  E+E+++A 
Sbjct: 223 SGSL-----------DLGRGGRESELEEVLERQRGELSQLKERLTMLCRQMAELEEELAT 271

Query: 605 VTAK--GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                    E  A L   L E   Q   +E +   +E
Sbjct: 272 AQRDVIKSEEINAKLQRDLKEALAQREDMEERITTLE 308


>gi|326671334|ref|XP_003199414.1| PREDICTED: LOW QUALITY PROTEIN: si:ch211-251d10.5 [Danio rerio]
          Length = 1455

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 89/282 (31%), Gaps = 25/282 (8%)

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
            A ++L V    + D+  + +    +    +       + +  I  +K++  +  Y +++
Sbjct: 107 EAAQQLQVTVRKMHDLETENQRLKDTLQEYEREISEVKNQEVTIKALKEKLEQ--YERSL 164

Query: 429 RDR---------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           + +         L    ++              +   + ++    R   S +    L   
Sbjct: 165 QAKNTEEAVEPNLDSSEREERQSKGENLPNNYADKESQPEQSQESRTEDSDVKTQSLQTA 224

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               +A L      +      +  E+  +     +L++      +   E        + +
Sbjct: 225 LEATQAELHELKTKYDEESTAKANEIEAVM---TDLER-----ANQRAETAEREAGTLRE 276

Query: 540 RLCERG----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQ 594
           +L   G        ++      +         E  +  + +  Q+  A   +    S  Q
Sbjct: 277 QLTSAGKTMQSSNQIQNAPEMDKSLEAELGAKEREVERLAEDVQRLQASLAQLSETSTNQ 336

Query: 595 KEEIEKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE 635
             ++E+Q++   A  +  E+     S   E+  ++  ++S E
Sbjct: 337 ISQLEQQLSSKEALLKQLEEKLQDQSDYEEIKRELCTLKSVE 378



 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 51/141 (36%), Gaps = 12/141 (8%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVD--- 573
              L     E K   PE++ +++    +GF   +  L ++ +++     +    ++D   
Sbjct: 42  RKKLIDQSREFKKNTPEDLRKQIAPLLKGFQAEIDALSKRSKESEAAFLSVYKRLIDVPD 101

Query: 574 ---VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK----GEAEKTAILISILHEVHI 626
                +  QQ     ++   L  + + ++  + +   +       E T   +    E + 
Sbjct: 102 PVSALEAAQQLQVTVRKMHDLETENQRLKDTLQEYEREISEVKNQEVTIKALKEKLEQYE 161

Query: 627 QIHQIESQEAMIEGFGKMSGR 647
           +  Q ++ E  +E     S R
Sbjct: 162 RSLQAKNTEEAVEPNLDSSER 182


>gi|313903601|ref|ZP_07836991.1| Peptidase M23 [Thermaerobacter subterraneus DSM 13965]
 gi|313466154|gb|EFR61678.1| Peptidase M23 [Thermaerobacter subterraneus DSM 13965]
          Length = 519

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/256 (9%), Positives = 73/256 (28%), Gaps = 48/256 (18%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                       +R ++ +  +             +K             L      +  
Sbjct: 135 PAPVRAASSISELRQKINEANETLRQLEQRQAEAQRK-------------LKALKQDEAS 181

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK-----------LWSFLFS 524
           ++++  + EA +  T +    + ++  +  A +     E+ +           +   + +
Sbjct: 182 IAERVRILEAQIRETRVKLAELTEKVREAEARVEAKQQEIDEATRQLEQREDYVARRIRA 241

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                   + E + +      F   L  L + +R      A  +A    +    ++  A 
Sbjct: 242 IQENGTVGVLEVLFEANSFSDFLTRLDLLSQILRHDLDVMAQVQAERERLVAEKKELDAE 301

Query: 585 YKRFRLLSRQKEEIEKQIAQVTA-----------------------KGEAEKTAILISIL 621
            ++   L  + E  ++Q+    A                       + ++++   L+  L
Sbjct: 302 RQKLVALKAEVERQQRQLNATVASHKDELARLAEQRRRMEEHLEALEADSKEVERLLKNL 361

Query: 622 H-EVHIQIHQIESQEA 636
             ++  Q+  +    A
Sbjct: 362 QADLKRQLEALNRNRA 377


>gi|311255167|ref|XP_003126113.1| PREDICTED: myosin-9-like [Sus scrofa]
          Length = 1808

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 87/265 (32%), Gaps = 28/265 (10%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EKL ++     +     E E        ++ ELE    +    +++++ R  + QA + 
Sbjct: 883  AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKK 942

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++QQ  Q+   +        +K    +       + ++   +  +       +E  LL  
Sbjct: 943  KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCKLAKEKKLLE- 1001

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +                      E    +L 
Sbjct: 1002 -----DRIAEFTTNLMEEEEKSKSLAKLKNK--------------------HEAMITDLE 1036

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L R+ +       T      D      Q   L  +   L  Q  + E+++    A+ E
Sbjct: 1037 ERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVE 1096

Query: 611  AEKTAILIS--ILHEVHIQIHQIES 633
             E     ++   + E+  QI +++ 
Sbjct: 1097 EEAAQKNMALKKIRELESQISELQE 1121


>gi|258541947|ref|YP_003187380.1| hypothetical protein APA01_08520 [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633025|dbj|BAH99000.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
 gi|256636082|dbj|BAI02051.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
 gi|256639137|dbj|BAI05099.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
 gi|256642191|dbj|BAI08146.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
 gi|256645246|dbj|BAI11194.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
 gi|256648301|dbj|BAI14242.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
 gi|256651354|dbj|BAI17288.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654345|dbj|BAI20272.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
          Length = 127

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 10/75 (13%)

Query: 28  DRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCHV---KGDHLSFLSALLGC 83
            ++       ++ A  P   ++ P SF  N + G +  F+       GD +S  + L  C
Sbjct: 54  KKQG-----PEWVARNPKRSDRKPGSFSVNLNTGRWADFA-QADARGGDVISLAAYLADC 107

Query: 84  SFIESVQRLAAIAGV 98
           S  E+   LA + G+
Sbjct: 108 SQHEAAVMLAKMLGL 122


>gi|224418825|ref|ZP_03656831.1| replicative DNA helicase [Helicobacter canadensis MIT 98-5491]
 gi|253828186|ref|ZP_04871071.1| replicative DNA helicase [Helicobacter canadensis MIT 98-5491]
 gi|313142345|ref|ZP_07804538.1| replicative DNA helicase [Helicobacter canadensis MIT 98-5491]
 gi|253511592|gb|EES90251.1| replicative DNA helicase [Helicobacter canadensis MIT 98-5491]
 gi|313131376|gb|EFR48993.1| replicative DNA helicase [Helicobacter canadensis MIT 98-5491]
          Length = 481

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 48/146 (32%), Gaps = 18/146 (12%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A+L ++   P  L    + LA   +     Q +++ +            E I ++  +
Sbjct: 6   ERAVLSSIFFDPEQLDFVSETLAPEDFSYTPNQNIFAAMLELRRLDMPIDEEFILKKSTK 65

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                      R +    + +  + + I D+      A     +     R+   +  +I 
Sbjct: 66  S----------RPIDQEEILNILSTSPISDI-----HAYTKEIKEDSTRRKLHSLAMKIN 110

Query: 604 QVTAKGE---AEKTAILISILHEVHI 626
           + +   +    +    L S L+++  
Sbjct: 111 EASNDSDNPAKDIIDYLQSELYKITN 136


>gi|47210502|emb|CAF90141.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 476

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 41/105 (39%), Gaps = 2/105 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L        L +  + ++ A +     + N   +    + A   ++R     + 
Sbjct: 365 EQIRNQLT--AMSASLAKAIQVIKPASILQEREDQNQQAIAAYLKNARKDHQRILARRQT 422

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            EE ++++  +  + E E+     + + +V     +   QEA  E
Sbjct: 423 IEERKERLESLNIQREKEELEQREAEMQKVRKAEEERLRQEAKAE 467


>gi|87119010|ref|ZP_01074908.1| effector protein B, substrate of the Dot/Icm secretion system
           [Marinomonas sp. MED121]
 gi|86165401|gb|EAQ66668.1| effector protein B, substrate of the Dot/Icm secretion system
           [Marinomonas sp. MED121]
          Length = 614

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 89/285 (31%), Gaps = 27/285 (9%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
            Y     + L  +             E  +  +  + A L+    +    I D + +   
Sbjct: 198 DYQSLDTQYLSKQKELDDLQTQYARLEQINQKSRSDYALLKQQNLDLGGAISDARAQQQT 257

Query: 425 S-QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               I+ +   + +      +   +     +    Q   +   + +SL  G L+ K  + 
Sbjct: 258 LWDQIQVKDNIISRLEADNSALRDQSSAIESITSGQVTTALPAVDNSLKLGTLNAKVLVL 317

Query: 484 EAALLL---TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE----E 536
           E+ +      L  + + L    Q        N E+ +L   L     E K    E    E
Sbjct: 318 ESEIAAQKKLLSEYQSKLSNLEQSDDKSDLKNIEIARLGQALADLESEHKELTYEFEQIE 377

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + Q++ +     LL+ L +   +    +   +    D++    + + L  R+        
Sbjct: 378 LAQQVSQEQQLTLLQDLTQARANLAELTLQKQRLEEDLKLAQTELIDLQGRY-------- 429

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
             E  +  + +  E             +  Q+  +   EA+ EGF
Sbjct: 430 --ENSLLALESAKET---------RQSLENQLSDLIELEAISEGF 463


>gi|332234881|ref|XP_003266632.1| PREDICTED: transcription elongation regulator 1-like isoform 2
           [Nomascus leucogenys]
          Length = 1092

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 625 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 684

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 685 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 732

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 733 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 781

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 782 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 841

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 842 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 894


>gi|313110204|ref|ZP_07796101.1| hypothetical protein PA39016_002280009 [Pseudomonas aeruginosa
          39016]
 gi|310882603|gb|EFQ41197.1| hypothetical protein PA39016_002280009 [Pseudomonas aeruginosa
          39016]
          Length = 124

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 17/64 (26%)

Query: 8  IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND-SKGFY--YC 64
          I  LL  +                    K  + ACCP HD+K+PS    +   G     C
Sbjct: 4  IDKLLPRLDKV-------------KADGKSRWKACCPAHDDKSPSLRVTETEDGTVLLKC 50

Query: 65 F-SC 67
          +  C
Sbjct: 51 WVGC 54


>gi|258511330|ref|YP_003184764.1| chromosome segregation protein SMC [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478056|gb|ACV58375.1| chromosome segregation protein SMC [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 1190

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 65/223 (29%), Gaps = 15/223 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           +  I   L   F+    E             H ++KGP     Q      +   K    E
Sbjct: 636 ASRIARTLNHRFRVVTLEGDVIAPGGLMTGGHVNRKGPGLLGRQREREDLENKLKALEAE 695

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL-----PEEIHQ 539
            A L        +     +   +      E       L     E++          E  +
Sbjct: 696 RARLSA--RQKELRARVVELGRERDRLEAERAVRLGHLKQFENEERQADFQLKTLAERME 753

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLSRQKEEI 598
            L          +   + R A +     EA   D       A+A  + R   L  +  E 
Sbjct: 754 ALDWEREALAADRSQIERRKAEVRDLLAEA--EDEVTQLTAAIAERRDRLAALESELAEA 811

Query: 599 EKQIAQ-----VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           ++++        T + E E  A  ++ L E   ++ ++ ++ A
Sbjct: 812 KERLTGLRIEVATLEQERENLAQRMAELRERKARLERVHAEMA 854



 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 41/134 (30%), Gaps = 12/134 (8%)

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
           +L   +       +          L       L ++          +         +  +
Sbjct: 374 ELADEIDRL--SGELIDANHRAAALRNEW-KTLEEKFQAGALRHERFEEEAARIEAERDR 430

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQ 627
                    +R   + R+ +E+E+Q+A + A+ E   +           L + +  +  +
Sbjct: 431 VEAGKQERAQRAEEIRRELDELERQLAALEAEREQAASDEAQAVSAWHRLQADVQGLSSR 490

Query: 628 IHQIESQEAMIEGF 641
           +  +   EA  +G+
Sbjct: 491 LELLRDLEAGYDGY 504



 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 26/306 (8%), Positives = 83/306 (27%), Gaps = 47/306 (15%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            +   K A  KL   +  LV +               E   +    +   + I++ ++  
Sbjct: 170 FKHRRKEAERKLEETAANLVRVDDILAELEAQLGPLAEARRIAERYQALSDEIEETEIAL 229

Query: 423 YY--SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                  + DR +QL ++   E +      ++     +     ++ +  +  + +  ++ 
Sbjct: 230 LVVEIDRLHDRYEQLKRQVAREEAARNEAQERLRLSEEAWKARRQALNEATARLESLQQ- 288

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                        +  +++ + +    +      L  L          ++    +     
Sbjct: 289 ------------QYVEVVEARQKAEGSLALAEERLAALAQRAEDRRRRREELARDLAELE 336

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ---------QALALYKRFRLL 591
                      +    + +     A       D R+            + +    R   L
Sbjct: 337 AAMEAVARAEAEAAAALGERQHLLADARQRADDARRLELADEIDRLSGELIDANHRAAAL 396

Query: 592 SRQKEEIEKQIA-----------------------QVTAKGEAEKTAILISILHEVHIQI 628
             + + +E++                         +   +  A++   +   L E+  Q+
Sbjct: 397 RNEWKTLEEKFQAGALRHERFEEEAARIEAERDRVEAGKQERAQRAEEIRRELDELERQL 456

Query: 629 HQIESQ 634
             +E++
Sbjct: 457 AALEAE 462


>gi|217970141|ref|YP_002355375.1| DNA repair protein RecN [Thauera sp. MZ1T]
 gi|217507468|gb|ACK54479.1| DNA repair protein RecN [Thauera sp. MZ1T]
          Length = 551

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 47/166 (28%), Gaps = 2/166 (1%)

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
             + +     S RE  LL   +     +    +E A+I  ++  L    S +        
Sbjct: 174 QREAEADSASSARERELLAWQLRELEQVGFDIEEWAEINAEHARLAHAASLIEGAEAAVV 233

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                E+            +  L               A  +   +          R  L
Sbjct: 234 ALGEGELAVCSVLGRLDGRIAALADFDAGLADVRELISAAAIQADEALHALRRYRDRLDL 293

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQ 634
              +  E+E++IA V       +     L ++  +   ++  +E+ 
Sbjct: 294 DPGRLAELERRIAAVMEAARKYRVQPEELPALAQQWRERLDTLEAT 339


>gi|242209282|ref|XP_002470489.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730522|gb|EED84378.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1092

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 90/280 (32%), Gaps = 21/280 (7%)

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI-HLKNCINHIKDQKLRYYY-S 425
           +   ++   ES+    M           +   E  E E          ++++     Y  
Sbjct: 477 QEEVDRSREESMDRSMMDEASGQALHQLHRRIESLERERADGDRREQEMREELEARVYEL 536

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE- 484
           Q +RD L +  +      +G     ++  +  +  G  + + +   +  +  ++ +  E 
Sbjct: 537 QEVRDELARRDESEQELKAGIRAAKEEMEQMGELTGNHEAIARQIHLNEEAERQRAAAEV 596

Query: 485 ------AALLL----TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                   LL         H ++  +  +   ++   + E+  L + +     +      
Sbjct: 597 AWDEERQKLLSDNESLRSEHISLQAQVTELREEVVRKDAEIGMLKAEV-EAQWKHTETGS 655

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E++   + ER   EL  ++D                     +   +   ++     L R+
Sbjct: 656 EKLQHLVQER--DELKAEVDALNERISGMEEDWSQGENKKVELENEIQEVWAAKEDLERE 713

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           + E+E QI       E E +  L   L E   ++  +E +
Sbjct: 714 RTELEDQIR-----AEHEHSEHLTQALQEGEDRVATLEQE 748



 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 4/88 (4%)

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           K++    R         + +  +         A  +    L R+ E +E++      + E
Sbjct: 464 KRVSELERAVRGLQEEVDRSREESMDRSMMDEASGQALHQLHRRIESLERE-RADGDRRE 522

Query: 611 AEKTAILIS---ILHEVHIQIHQIESQE 635
            E    L +    L EV  ++ + +  E
Sbjct: 523 QEMREELEARVYELQEVRDELARRDESE 550


>gi|109079184|ref|XP_001101428.1| PREDICTED: transcription elongation regulator 1 isoform 4 [Macaca
           mulatta]
          Length = 1096

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 629 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 688

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 689 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 736

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 737 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 785

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 786 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 845

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 846 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 898


>gi|116493689|ref|YP_805423.1| replicative DNA helicase [Lactobacillus casei ATCC 334]
 gi|191636935|ref|YP_001986101.1| Replicative DNA helicase C [Lactobacillus casei BL23]
 gi|227533405|ref|ZP_03963454.1| replicative DNA helicase DnaB [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239630924|ref|ZP_04673955.1| replicative DNA helicase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301065246|ref|YP_003787269.1| replicative DNA helicase [Lactobacillus casei str. Zhang]
 gi|116103839|gb|ABJ68981.1| primary replicative DNA helicase [Lactobacillus casei ATCC 334]
 gi|190711237|emb|CAQ65243.1| Replicative DNA helicase C [Lactobacillus casei BL23]
 gi|227188971|gb|EEI69038.1| replicative DNA helicase DnaB [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239527207|gb|EEQ66208.1| replicative DNA helicase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300437653|gb|ADK17419.1| Replicative DNA helicase [Lactobacillus casei str. Zhang]
 gi|327380961|gb|AEA52437.1| Probable replicative DNA helicase [Lactobacillus casei LC2W]
 gi|327384137|gb|AEA55611.1| Probable replicative DNA helicase [Lactobacillus casei BD-II]
          Length = 462

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 54/181 (29%), Gaps = 18/181 (9%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +        E A+L  +  +   L +  + +    +     + L+  +            
Sbjct: 8   QQPPHSDEAERAVLGGIFLNADTLPDAQEYVTADDFYKKAHRLLFQAMTDLQDNGTAIDT 67

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN-------IVDVRQGYQQAL----- 582
             +   L        L  +        L +AT  A+       IV  +   ++ +     
Sbjct: 68  VTVSDYLDNHNN---LDDIGGVGYITDLVAATPIASNVVYYAKIVQQKSTLRKLISTAQN 124

Query: 583 ---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                Y     +    E+ E+QI  V+          +  +L++   QI Q+   +  I 
Sbjct: 125 IASRSYTEQDDVEGLVEDAERQIMDVSENRNQAGFKQIKDVLNQAMAQIDQLYQNDQAIT 184

Query: 640 G 640
           G
Sbjct: 185 G 185


>gi|85099423|ref|XP_960784.1| hypothetical protein NCU08962 [Neurospora crassa OR74A]
 gi|28922308|gb|EAA31548.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 684

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK-- 608
             L+R+        A  E     + +    + +  ++  +L  + ++  ++ A++  K  
Sbjct: 79  ADLEREEAARAETLAIIEDLKERLSKAEASSESHKRQMDILQSRLDDATREQAKLEEKVH 138

Query: 609 GEAEKTAILISILHEVHIQIHQIES 633
              E+   L +   E+  Q+ ++ES
Sbjct: 139 ENEEQIEALKNEKREISRQMREMES 163


>gi|322488094|emb|CBZ23340.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1301

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 68/237 (28%), Gaps = 19/237 (8%)

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            ++  E     K   + ++  +      +    RL+              R   +     
Sbjct: 189 QEKLTEAAEECKELRHALQKARETQQAQKDSMKRLEVELYHARDAQQQQQRQEVEQRMLL 248

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
             +G      ++   K + + +  L +A             +E  +  A +   ++EL  
Sbjct: 249 KAEGADWEAQRARYEKRQDTLEAQLHQA------------RKELREMEARVAEQDDELAA 296

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L                E     L  R   + +  ++  +R+     A   A + +    
Sbjct: 297 LRE---RAAKASAETEDEYADIHLRMRQLAQSMASMEVALRERDATIAEQAARLREAADR 353

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +  +    R     R+K E     A+   + + +     +    E+  Q   ++ +
Sbjct: 354 QEAEV----RAVTAEREKAEAALASARDALQRQTDDIRRRMHRFTELQQQREALKDE 406


>gi|315054069|ref|XP_003176409.1| hypothetical protein MGYG_00498 [Arthroderma gypseum CBS 118893]
 gi|311338255|gb|EFQ97457.1| hypothetical protein MGYG_00498 [Arthroderma gypseum CBS 118893]
          Length = 999

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 43/506 (8%), Positives = 125/506 (24%), Gaps = 38/506 (7%)

Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183
           A   F + L    +           I     +  ++    +      E            
Sbjct: 50  AVSVFRNVLWPDSNPTAPSNESLHTITPLLKDQLQVFL--NKWDHKLEEHISANAERLIS 107

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243
                      + T      N +   +         + G T  +    +   +P      
Sbjct: 108 RVTDCT----PTPTLQAMVTNIIDPELHPIHLDYNNWFGFTFYRFAKKEVRRNPNMYTLA 163

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
                 NF+ A +  +  +R+ +          ++   D L    A +  V +     L 
Sbjct: 164 AIFVFVNFWLARSARRFDVREKLEVTKEIPADKMKEIHDELLAHNARLHLVEA-KVEGLL 222

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
                 L +   ++           R + ++  +      PG      +   G      +
Sbjct: 223 IAPTAALTEGQRQV---------SRRGSERSSQIGDPEKFPGRIQVLPVSQPGRSEFESL 273

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +       + LI                     +  +  + +    +    +KD      
Sbjct: 274 QQQLTAMRQDLISLKSDSETHSEHFSENMNVVMSTIKELQKDTRSNSHARILKDAA---S 330

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               + + L+  F       S        ++   + +  + ++ +      +L ++    
Sbjct: 331 IRNIVLEELELQFSPLQNRISDI--EHYTSSSRENSEKIASQISRIMDAIHELKRESEKA 388

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  LL       A  ++   E   ++    EL++                 + +   L  
Sbjct: 389 ERKLLALASTKTARSKDHEFEFDALQKQVAELRR---------------TTDVLKDELNG 433

Query: 544 RGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
               +   ++   ++     +     +  +       +             +   +  + 
Sbjct: 434 NISRQTFSRMNEMKEGSARDICIDLVKKEMAKFESSLRNVEERNGTKSQDLQHLRDSLEA 493

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQ 627
           + + + +   E +  L   + E+  +
Sbjct: 494 LQEASTRSLKEVSDRLDKAVDEIQSK 519


>gi|302793702|ref|XP_002978616.1| hypothetical protein SELMODRAFT_418380 [Selaginella moellendorffii]
 gi|300153965|gb|EFJ20602.1| hypothetical protein SELMODRAFT_418380 [Selaginella moellendorffii]
          Length = 963

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 75/210 (35%), Gaps = 16/210 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KY+ + +   R +++          +  +++    K +L     + + AL+   I   
Sbjct: 404 YRKYLEKDAALERRFQQVYVAEPAVEDAISILRGLREKYELHHGVKISDNALVEAAILSS 463

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI--------HQRLCERGFG 547
             + +++     I   +    KL     S            I         +   ++   
Sbjct: 464 RYISDRFLPDKAIDLVDEAAAKLKMERTSKPTALDEIDRVIIKLEMERLSVEHDNDKASR 523

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E L++L+ ++          +     ++Q ++   ++  R   +  + + +  +I Q   
Sbjct: 524 ERLQKLEAELASL-------KEKQKALQQQWEMEKSIMTRINSIKEEIDRVNLEIQQAER 576

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEA 636
             +  + A L   +L  +  Q+++ E + A
Sbjct: 577 DYDLNRAAELKYGVLTNLQKQLNEAEGELA 606


>gi|152991417|ref|YP_001357139.1| hypothetical protein NIS_1676 [Nitratiruptor sp. SB155-2]
 gi|151423278|dbj|BAF70782.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 684

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 100/296 (33%), Gaps = 16/296 (5%)

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
             E P        K    + I +    +    + E +       +E  +L          
Sbjct: 201 EKESPAEISPVQKKEEILEQIDQLKTAIKNHQEFEVQK------EEEKKLISQELEKHKE 254

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I++   R    Q I   L+Q  ++          +  KNA         +++ +    K 
Sbjct: 255 IEN-IERE--RQRIETDLEQANEQIQKIEKKEKSFISKNAYLAISNNLLEKIKKYLDKKR 311

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +  + PS      +  L+     +     +L    +    L+KL        +E  +   
Sbjct: 312 EKGELPSGIREQFIHDLLEKGECI--CGTKLEVGDFHYEHLKKLLENTIKKNIEDNFINI 369

Query: 535 EEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             I + +      F +LL++L ++  +      + E   ++++   + +  +  +   L 
Sbjct: 370 SGILENVIGYTDEFKKLLEELHQEKNELIKQRDSLEQQYLEIKDKLKNSDNINIKE--LG 427

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           ++ E +E +I ++      EK   L  +  E+    ++I+  + + E       R+
Sbjct: 428 KRLEYVENKIKEIMETL-GEKKEKLNRLYKELQEVENEIQKHQTLNEKIALAEERV 482


>gi|123469906|ref|XP_001318162.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121900914|gb|EAY05939.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 5296

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 88/270 (32%), Gaps = 20/270 (7%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
            A EK   E         K ETE +     +    LE         +++ + +   +Q + 
Sbjct: 3895 ANEKSEAERKLEEVQNEKAETERKLNEAEEANKNLENEKNETQKKLEEAEQQKAETQKLL 3954

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            ++ ++  +    E S   +  ++    +      +  +Q  L + K  K     E A   
Sbjct: 3955 EQTEEAKKNLENEKSETEKKLQETEEAKKNLEQEKSDIQKKLDETKQQKVNLENEKAETQ 4014

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
             L+      ++  +                         QK     E  ++  E+   + 
Sbjct: 4015 KLLEETEEAKKNLEN-------------------EKAETQKKLDEAEEAKKNLEQEKSDA 4055

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
             K+L+    +              + +  +    + +    + RQ  E +K  ++   + 
Sbjct: 4056 EKKLEEVQNEKSALENEKNETQKKLEEAEKAKDQIVEEKSAVERQLVESQKDSSENQKQQ 4115

Query: 610  EAEKTAILISILHEVHIQIHQIESQEAMIE 639
            + EK+  L   L ++  +++ +E + A  E
Sbjct: 4116 DEEKS-KLQQQLSDLQNKLNDLEKKLADKE 4144


>gi|332309235|ref|NP_001193799.1| hook homolog 1 [Bos taurus]
 gi|296489138|gb|DAA31251.1| hook homolog 1 [Bos taurus]
          Length = 728

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 38/343 (11%), Positives = 106/343 (30%), Gaps = 28/343 (8%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           DG                   +   +     L   +D         +    +    +   
Sbjct: 233 DGSFDDPNTMVAKKYFHAQLQLEQLQEENFRLEAAKDDYRVHCEELEKQLIEFQHRN--- 289

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
            ++    E      +  D             + ++  + +      +R +++ L +  + 
Sbjct: 290 DELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQKLQDLNDLRKQVKTLQETNMM 349

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPAI 497
                    ++  +    +   +   +            S R   L   +      H A+
Sbjct: 350 YMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSESKRADTLAFEMKRLEEKHEAL 409

Query: 498 LQEQYQELAD---IRYDNNELQ--KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           L+E+ + +     ++  N EL+  ++     +          E +   +    + E+  +
Sbjct: 410 LKEKERLIEQRDTLKETNEELRCSQVQQDHLNQADASATKSYENLAAEIMPVEYREVFIR 469

Query: 553 LDRQVRDAGLWSA-TTEANIVDVRQGYQQALA-----------LYKRFRLLSRQKEEIEK 600
           L  + +   L    T    I ++++  +Q                +R R L +Q E+++K
Sbjct: 470 LQHENKMLRLQQEGTENERIEELQEQLEQKHRKMNELETEQRLSKERIRELQQQIEDLQK 529

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQEAMIE 639
            + +  +K E E ++ L   L     ++     +++ ++ +IE
Sbjct: 530 SLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQELIE 572


>gi|127760|sp|P10567|MYSP_CAEEL RecName: Full=Paramyosin; AltName: Full=Uncoordinated protein 15
 gi|6896|emb|CAA30857.1| paramyosin [Caenorhabditis elegans]
          Length = 882

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 91/273 (33%), Gaps = 23/273 (8%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D   +            E+          +      +   +R  L+    + +  + DQK
Sbjct: 179 DQLQKDKHTAEKAAERFEAQANELANKVEDLNKHVNDLAQQRQRLQAENNDLLKEVHDQK 238

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           ++    Q ++  L Q  ++         R   +      Q       ++++L +  +++ 
Sbjct: 239 VQLDNLQHVKYTLAQQLEEARRRLEDAERERSQLQSQLHQVQLELDSVRTALDEESIARS 298

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +          + +  I Q + +  A++   + E++ L   +     E           
Sbjct: 299 DAEH-----KLNLANTEITQWKSKFDAEVALHHEEVEDLRKKMLQKQAEY---------- 343

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              E     +L+++ +  +      +  E  IVD+ +       L +    L RQ  E++
Sbjct: 344 ---EEQIEIMLQKISQLEKAKSRLQSEVEVLIVDLEKAQNTIALLERAREQLERQVGELK 400

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +I ++T +            L  V+ ++ +++
Sbjct: 401 VRIDEITVE-----LEAAQRELRAVNAELQKMK 428


>gi|85111728|ref|XP_964075.1| hypothetical protein NCU02793 [Neurospora crassa OR74A]
 gi|28925839|gb|EAA34839.1| predicted protein [Neurospora crassa OR74A]
          Length = 10820

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 52/158 (32%), Gaps = 24/158 (15%)

Query: 495   PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             P++ +    +L D+        +L   +  +   QK     E            +L   +
Sbjct: 10335 PSLRKRHSAQLIDLE------ARLAQLMAENAALQKAKNDAEAELSQRNADLASILADKN 10388

Query: 555   RQVRDAGLWSATTEANIVDVRQGYQQ--------ALALYKRFRLLSRQKEEIEKQIAQVT 606
              ++ +       T+     + + Y+         A+   +  R L  Q  +  +++A   
Sbjct: 10389 VEIENLQREIQETQETCNRLEETYEGLKTSTSAIAVKHNETVRALEEQVRKAAEELAAAQ 10448

Query: 607   AKGEAE----------KTAILISILHEVHIQIHQIESQ 634
                E E          + A L + L+    QI +++ Q
Sbjct: 10449 GNHEQEYTKAIAEKDAQIAHLRAQLNAQTAQIRELQEQ 10486


>gi|332884653|gb|EGK04910.1| chaperone ClpB [Dysgonomonas mossii DSM 22836]
          Length = 863

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 71/212 (33%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++        +  +  +++    K +   K  +++ A++  +    
Sbjct: 318 YQKYFEKDKALERRFQIVMVDEPSEVDAISILRGLKEKYENHHKVRIKDEAIVAAVQLSS 377

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E            +          +   
Sbjct: 378 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEKSRRIKQLEIEREAIRRENDKQKE 437

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
                 +     E    +++  +Q    +  + +      E  + +  +   +G+  K A
Sbjct: 438 AELTKEISKLKEEET--ELKAKWQSEKEVINKIQQNKIDIENAKFEAEKAEREGDYGKVA 495

Query: 616 IL----ISILH----EVHIQIHQIESQEAMIE 639
            L    I  L     ++  Q+H+++  +AM++
Sbjct: 496 ELRYGKIKELETGIAQLQSQLHEMQGSQAMVK 527


>gi|304396965|ref|ZP_07378845.1| MscS Mechanosensitive ion channel [Pantoea sp. aB]
 gi|304355761|gb|EFM20128.1| MscS Mechanosensitive ion channel [Pantoea sp. aB]
          Length = 1109

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL--TLIN 493
           F   + + S   +  ++    +     ++++         LS++    E A      + +
Sbjct: 18  FAASLPDASQLKQQLEEIKSAKSSPAQAEQIQTIEAALNFLSERDDSLERAAQYQQVIDD 77

Query: 494 HPAILQEQYQELADIRYDNNELQ------KLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
            P + +E  Q++A +  +   ++      +L   +     +      +   ++   R   
Sbjct: 78  FPRLARELRQQIAALSDNGKTVRSNMSSAELDQEILQVSSQLLEEGRQARQEQDRAREIS 137

Query: 548 ELLKQLDRQVRDAGLWSATTEANIV-------------DVRQGYQQALALYKRFRLLSRQ 594
           + L QL +Q  +A      +E  +                RQ    A         L++ 
Sbjct: 138 DSLSQLPQQQTEARRAMTESERRLQGVSSSSPQGQLQLAARQAESAANKALVDELELAQL 197

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                +++A++ A+    K   L + L  +  Q++    +EA
Sbjct: 198 SANNRQELARMRAEAHQRKATQLDNYLQALRNQLNDQRQREA 239


>gi|296391508|ref|ZP_06880983.1| hypothetical protein PaerPAb_25283 [Pseudomonas aeruginosa PAb1]
          Length = 948

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 84/233 (36%), Gaps = 19/233 (8%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R + S+ + +RL+ L ++              +     ++   Q + +   +        
Sbjct: 369 RQFSSEDLEERLRDLEKRLKNVRQQLEHADNNSYARLREEFSQQDVERLMRLFNGALFSL 428

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            L E  +    ++   +  +  + + D  +     +     +    +E            
Sbjct: 429 PLGENGV---NLDDGDVWVKSVEAILD-HFKGEHFEAPGLSIDLSHIEPPALQALADRAA 484

Query: 541 LCERG--FGELLKQLDRQVRDAGLWSA---TTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           L ++     + LKQL  Q   A   +A     E    DV    Q+AL  ++R + L+ ++
Sbjct: 485 LRDQKERLEKELKQLKTQQSVAADRAASKAQAEKLYQDVLDA-QKALEDFRRTQTLTAEE 543

Query: 596 EEIEKQIAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQEAMIE 639
            E   ++AQ+ A  +          E+   L + L  V  Q+  +E++E  +E
Sbjct: 544 PEKLAELAQLEASQDELKRSSDAFAERVQQLSARLQLVARQLGDLEAKERTLE 596


>gi|148912819|ref|YP_001293398.1| Putative DnaB-like replicative helicase [Pseudomonas phage F10]
          Length = 476

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 40/131 (30%), Gaps = 14/131 (10%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A++  +I    ++++   +L    + +    +L+  L +   +        ++    
Sbjct: 27  AEYAVIGAMIQRGDLIEDMGAKLEVSDFHHPACAELFELLLACQAKGIAVDIVTLY---- 82

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE--- 599
                +L          A L   T  A   D      +   + K+  +  R     E   
Sbjct: 83  -EARAQLADGQSTLQVAAHLVKNTPSAANAD------EYARIIKQRSVARRVIAAAEVMS 135

Query: 600 KQIAQVTAKGE 610
           +++       E
Sbjct: 136 QRLQDGEPLDE 146


>gi|148677956|gb|EDL09903.1| expressed sequence AU016693, isoform CRA_b [Mus musculus]
          Length = 942

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 88/273 (32%), Gaps = 9/273 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 661 PRETLEYKAALELEMWKEMQEDIFESQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 718

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L +L  +     S      ++    + ++  + + +Q S+ + +   
Sbjct: 719 AEYSILEGKLQKALTELETREQQLASAEAELQRERKELQLERERNLQELQDSVRRARDDC 778

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   L  L      LQ+Q  +  +       L+K +         +     +  
Sbjct: 779 VYQVELERLKLKQLEEDKQRLQQQLNDAGN---KYKTLEKEFQQFKDQQNNKPEIRLQSE 835

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 836 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 892

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +E+   +  A  E E        L ++  ++++
Sbjct: 893 LEQMRLRYLAAEEKETVRTEQQELLDIRNELNR 925


>gi|26332899|dbj|BAC30167.1| unnamed protein product [Mus musculus]
          Length = 929

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 88/273 (32%), Gaps = 9/273 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 648 PRETLEYKAALELEMWKEMQEDIFESQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 705

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L +L  +     S      ++    + ++  + + +Q S+ + +   
Sbjct: 706 AEYSILEGKLQKALTELETREQQLASAEAELQRERKELQLERERNLQELQDSVRRARDDC 765

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   L  L      LQ+Q  +  +       L+K +         +     +  
Sbjct: 766 VYQVELERLKLKQLEEDKQRLQQQLNDAGN---KYKTLEKEFQQFKDQQNNKPEIRLQSE 822

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 823 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 879

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +E+   +  A  E E        L ++  ++++
Sbjct: 880 LEQMRLRYLAAEEKETVRTEQQELLDIRNELNR 912


>gi|147907124|ref|NP_001080624.1| homer homolog 3 [Xenopus laevis]
 gi|28277257|gb|AAH45262.1| Homer3 protein [Xenopus laevis]
          Length = 357

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 66/208 (31%), Gaps = 16/208 (7%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             RL +   +  TE +                  +       L + + ++     E   +
Sbjct: 114 AARLARERSQDKTELTNPALNITSQQVLPSPIISANGPGDDKLFRSQSAEMELSTERERV 173

Query: 489 LTLINHPAILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
             +++  ++ + Q++      + +  +   KL + L       + +  +    +      
Sbjct: 174 KKMLSEGSVCEVQWEA----EFFSLQDNNNKLVAALREANANVEKWKKQLAAYQEEAEML 229

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            + + +L+ Q         T E    ++    +   AL K          E    + ++ 
Sbjct: 230 RQRVAELESQTLK-----ETNEEPGDELASRLKDLEALLKTKEEEILLLREQRPDLMELE 284

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
           ++ +      L+  L E+  Q  ++E +
Sbjct: 285 SERDK-----LLQRLQELETQNQEMEKE 307


>gi|71020943|ref|XP_760702.1| hypothetical protein UM04555.1 [Ustilago maydis 521]
 gi|32879539|emb|CAE11864.1| myosin 5 [Ustilago maydis]
 gi|46100296|gb|EAK85529.1| hypothetical protein UM04555.1 [Ustilago maydis 521]
          Length = 1611

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/381 (9%), Positives = 112/381 (29%), Gaps = 34/381 (8%)

Query: 275  ILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI--VLCFDGDDPGLRAAY 332
            I   GY    +      +  +           +  +  L+  I      + D   +    
Sbjct: 724  ISCAGYPSRWTFADFAERYYMLVPSDRWNMSDMDKVKALATHILTTTITEKDKYQIGLTK 783

Query: 333  KAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETEN 392
                  +       R + +         +  R      ++ +   ++ +      R    
Sbjct: 784  IFFRAGMLAQFEQRRTDRLNSVTTVIQKNLRRHVQMKKYQAMRTNAVKIQSWWRMRLA-- 841

Query: 393  RSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452
                           +          K++      +  +  Q  ++ + +     R    
Sbjct: 842  ------------IKQVNELRQATAATKIQTVTRGFLARKQYQTTRQAVIKIQSVVRGRAV 889

Query: 453  NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-------INHPAILQEQYQEL 505
             + ++  K         +L++G ++++   +E   ++ L       +    ++  + +  
Sbjct: 890  RSTYKTAKIDFSATRLQALLRGAMARRQFRKEKQGVIHLQSCYRRRLAKKELMARRNEAR 949

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWS 564
            +   +     +            +   L + + +R+ + +     +K L+ Q+       
Sbjct: 950  SVSHFKEVSYK---------LENKVVELTQNLQKRIKDNKELSAKIKALEAQMLTWQGKH 1000

Query: 565  ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
               E     + +   +       F  L   K+E++ +  + + K  AE+   +  +  E+
Sbjct: 1001 EEVEGRNRGLAEELAKPTVAMAEFEALLAAKKELDAK-QEASLKRIAEQDKRINDLTAEI 1059

Query: 625  HIQIHQIESQEAMIEGFGKMS 645
              Q  +++++   + G  K S
Sbjct: 1060 ERQADELQARSEALNGATKSS 1080


>gi|116052831|ref|YP_793148.1| hypothetical protein PA14_61990 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588052|gb|ABJ14067.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 948

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 84/233 (36%), Gaps = 19/233 (8%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R + S+ + +RL+ L ++              +     ++   Q + +   +        
Sbjct: 369 RQFSSEDLEERLRDLEKRLKNVRQQLEHADNNSYARLREEFSQQDVERLMRLFNGALFSL 428

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            L E  +    ++   +  +  + + D  +     +     +    +E            
Sbjct: 429 PLGENGV---NLDDGDVWVKSVEAILD-HFKGEHFEAPGLSIDLSHIEPPALQALADRAA 484

Query: 541 LCERG--FGELLKQLDRQVRDAGLWSA---TTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           L ++     + LKQL  Q   A   +A     E    DV    Q+AL  ++R + L+ ++
Sbjct: 485 LRDQKERLEKELKQLKTQQSVAADRAASKAQAEKLYQDVLDA-QKALEDFRRTQTLTAEE 543

Query: 596 EEIEKQIAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQEAMIE 639
            E   ++AQ+ A  +          E+   L + L  V  Q+  +E++E  +E
Sbjct: 544 PEKLAELAQLEASQDELKRSSDAFAERVQQLSARLQLVARQLGDLEAKERTLE 596


>gi|332231468|ref|XP_003264919.1| PREDICTED: TATA element modulatory factor [Nomascus leucogenys]
          Length = 1093

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 62/175 (35%), Gaps = 7/175 (4%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +   Q      KL+     +E  L    ++   + ++     A +     EL  L  
Sbjct: 613 GKEEVEKQHRENIKKLNSVVERQEKDLGHLQVDMDELEEKNRSIQAALDSAYKELTDLHK 672

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +  +        + + +  +   EL   L++   +A     T    + D+R   Q+
Sbjct: 673 A---NAAKDSEAQEAALSREMKAK--EELSAALEKAQEEARQQQETLAIQVGDLRLALQR 727

Query: 581 -ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              A  ++   L  +  E+++++ +   +   E +  + S    +  QI  +++ 
Sbjct: 728 TEQAAARKEDYLRHEIGELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 781


>gi|297700052|ref|XP_002827080.1| PREDICTED: myosin-8-like [Pongo abelii]
          Length = 1937

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHTRVVETMQSTLDAEIRSRNDALRVKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1624 DLNEMEIQLNHANRLAAESLRNYRNTQGILKETQLHLDDALQ-----GQEDLKEQ--LAI 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 VSQLQTEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828


>gi|270011842|gb|EFA08290.1| hypothetical protein TcasGA2_TC005924 [Tribolium castaneum]
          Length = 2287

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1900 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1959

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    + +  ++  + E           A+  E 
Sbjct: 1960 NKANAEAQKTIKRYQQQLKDTQTALEEEQRARDEAREQLGISER-------RANALQNEL 2012

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE----IHQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 2013 EESRTLLEQADRARRQAEQELGDAHEQLNDLSAQNSSLSAAKRKLETELQTLHSDLDELL 2072

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E QI  +  + +  +   L
Sbjct: 2073 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKDLQVRLDEAEANAL 2132

Query: 618  ---ISILHEVHIQIHQIESQ 634
                 ++ ++  ++ ++E++
Sbjct: 2133 KGGKKLIQKLEQRVRELENE 2152


>gi|239946433|ref|ZP_04698189.1| conjugative transfer protein TraA_Ti [Rickettsia endosymbiont of
            Ixodes scapularis]
 gi|239920709|gb|EER20736.1| conjugative transfer protein TraA_Ti [Rickettsia endosymbiont of
            Ixodes scapularis]
          Length = 2076

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 55/458 (12%), Positives = 123/458 (26%), Gaps = 43/458 (9%)

Query: 52   SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111
            S   N SKG +   S   KG+   F++     S  +S++ +A ++G+             
Sbjct: 1646 SLSMNLSKGTWIRHSSGKKGNIFGFVAEGACVSKRQSLEIVAELSGIRAESSSYD----- 1700

Query: 112  KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171
                   R    ++           +K       ++   +  I         D     + 
Sbjct: 1701 ------YRAHVASSR---------ANKEKMQEQTQQKQANEWIVAQDKINNADIFDPYKH 1745

Query: 172  HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
                   +  + + A      D +          +       +   + +        ++ 
Sbjct: 1746 LKGMMQHNILEAVYA----YKDANDKLLGHVVRFVSKENGKKQTLPVTYCYNAAKDEQAW 1801

Query: 232  KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
            +     +       K ++    A               SS  I++VEG    ++  +   
Sbjct: 1802 RLKGFTDKG----DKPIFGIEKA-------------IYSSKPILIVEGEKVAIAAAKILP 1844

Query: 292  QNVVSS-LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
               V S +G +    ++         +++  D D  G +AA    D +         V+ 
Sbjct: 1845 DYSVVSWMGGSNAADKVNWNQLQWRDVIIWPDNDKAGFKAAEVIKDKINKANDHIGFVSV 1904

Query: 351  VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD-ERAELEIHLK 409
            V  +  +      +      ++        +     K   EN      D  + +  +   
Sbjct: 1905 VDPTTLKFNGGVHKDLLPEKWDLADRLPEGMTTSNVKEAIENVRAAHLDLNQIQSVLQST 1964

Query: 410  NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
            N  +  +    R  + +  + ++    Q      + Y       +               
Sbjct: 1965 NASDASQQLVERNIWQEVFKGKIVGGEQITNLAANEYKAATFFRSEEASNYVKYLEATGK 2024

Query: 470  SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
              V     K  S     LL +L      L E  + L +
Sbjct: 2025 GGVAHDYLKYDSPMYQDLLTSLATRDERLSENIKSLGN 2062


>gi|189234195|ref|XP_970345.2| PREDICTED: similar to Liprin-alpha CG11199-PA [Tribolium castaneum]
          Length = 1172

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 92/308 (29%), Gaps = 22/308 (7%)

Query: 340 CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399
                G   + V     + P    +         +  ++                 ++  
Sbjct: 199 QQYKHGVIPSNVPAVEDK-PKENGQVESGDQVLNVNNKAASKP--RLVNGGVEPETDSAA 255

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
             A+L+  L+     I + + R      +++R+ +L +          +    NA+ +  
Sbjct: 256 RIADLQQALEQQTGEISNWQRR---VAEMQNRVGELEENLSKAQKELLKAQDANAKLQ-- 310

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ-KL 518
               + L ++   K    ++ +  E   L       +       E  +    + E Q KL
Sbjct: 311 ----RDLRENVAQKEDQEERIATLEKRYLNA--QRESTSLHDLNEKLEQELQHKEAQLKL 364

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                +   E+     +++ Q        E LKQ    +  A     + E  I  +    
Sbjct: 365 QEEKIAAIQEKLELAEQKLAQFSKLPEMEEQLKQRMEALTQAQERHGSAEDRIQRLEASL 424

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ-------I 631
           ++  A   R     +  E+   +++    K  +E    L   L E    + +       +
Sbjct: 425 EEKNAELMRLNQRLKMNEDHNSRLSATVDKLLSESNDRLQDHLKERMHALQEKNSLTQEL 484

Query: 632 ESQEAMIE 639
           E    M+E
Sbjct: 485 EKTRKMME 492


>gi|169834374|ref|YP_001694677.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168996876|gb|ACA37488.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 1179

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E  +E A +  +   L+ L   +       +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAEEEASLGSEEVALKTLQDEMARLIESLEAIKSQGEQARIQEQGLFLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  I  + +G  QA      +R   ++  K+ +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEEIDRLSEGDWQADKENCQERLAAIASDKQNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 833


>gi|145542191|ref|XP_001456783.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424596|emb|CAK89386.1| unnamed protein product [Paramecium tetraurelia]
          Length = 655

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 15/114 (13%)

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             ++      E+++  +R            +  I        Q + L +  + L++QKEE
Sbjct: 464 IDKIQSDYESEIVQMSERFQIAKNKLQEEHDMAIQMKD---NQIIKLQQELKQLTKQKEE 520

Query: 598 IEKQIAQVTAKGEAE--------KTAILISILHE----VHIQIHQIESQEAMIE 639
           ++ QI Q   K   +        ++    + L +    + IQ+ Q++ Q A +E
Sbjct: 521 LQSQIQQSNRKSSNDQTTLVNKLQSEKENNKLKDENKMLKIQLQQLQDQNAKLE 574


>gi|146307770|ref|YP_001188235.1| condensin subunit Smc [Pseudomonas mendocina ymp]
 gi|145575971|gb|ABP85503.1| condensin subunit Smc [Pseudomonas mendocina ymp]
          Length = 1162

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 75/238 (31%), Gaps = 31/238 (13%)

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
             +ER      L   +  ++D++ R    +  + R  Q   + ++E        +  A  
Sbjct: 662 EREEREAALAQLDERLLALRDEQRRQEELREQKRRQGQELARQLSELKARLSASQAKAEQ 721

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
              +    +       + +  ++  L EA L            +    L  +  DN + +
Sbjct: 722 LGLRRCRLQDELQEAAEQREIEQEQLGEARL------------QLQDALDAMALDNEQRE 769

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
            L +              + + +RL    +   +      +     G   A  ++    +
Sbjct: 770 SLLA------------SRDSLRERLDRVRQEARQHKDHAHQLAVRVGSLKAQHDSTRQAL 817

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +   QA  L++R   LS   EE E  + ++  K        L+     V  ++ Q  
Sbjct: 818 ERLEMQAERLHERREQLSLNLEEGEAPLEELRIK-----LEELLERRMAVDEELRQAR 870


>gi|19553265|ref|NP_601267.1| chromosome segregation ATPase [Corynebacterium glutamicum ATCC
           13032]
 gi|62390901|ref|YP_226303.1| chromosome segregation ATPase [Corynebacterium glutamicum ATCC
           13032]
 gi|21324835|dbj|BAB99458.1| Chromosome segregation ATPases [Corynebacterium glutamicum ATCC
           13032]
 gi|41326240|emb|CAF20402.1| Chromosome segregation ATPase [Corynebacterium glutamicum ATCC
           13032]
          Length = 1155

 Score = 42.6 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 54/157 (34%), Gaps = 14/157 (8%)

Query: 491 LINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           L+       ++ +EL   +      L  +         + +    E + Q        E 
Sbjct: 328 LLGRAETADKELEELEMAVEMTTERLTSIQEEAEDKAAQAREAEREHLAQVRAISDRREG 387

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK---RFRLLSRQKEE--------I 598
           + +L            + E     + +  ++ +       R R L+ ++++        +
Sbjct: 388 VVRLLASEESLRTQHTSAEEEAERLSEQLEEFIGRILDVERERRLTDERKQGVDTDRAPL 447

Query: 599 EKQIAQVTAKGEAEKT--AILISILHEVHIQIHQIES 633
           E+ + Q   + EA +T    L +   ++  ++ +++S
Sbjct: 448 EEALKQAKHEAEAAETRLEELRTKRSDLEKEVSRLQS 484


>gi|260174728|ref|ZP_05761140.1| putative DNA primase [Bacteroides sp. D2]
          Length = 967

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 49/450 (10%), Positives = 107/450 (23%), Gaps = 52/450 (11%)

Query: 78  SALLGCSFIESVQRLAAIAGVP------LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHS 131
               G  F E++ +LA++  V       +   D +     + Q D  ++ E+A       
Sbjct: 79  MYEEGLRFNEAILKLASMYNVTDELNRNVNKPDIRKVPASQDQKDGTKIFELADHLAPDQ 138

Query: 132 LK------NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
           L+         +    ++   + I           YA  +          K    +    
Sbjct: 139 LRILGPRVTQENAEALHWYSAKYIGYVKNREVTYKYATATYPIFMRECLVKPAEGDTPE- 197

Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
                          ++R          +  +              +  NS E   F K 
Sbjct: 198 -VKFYKIYEPLNPDKQWRFSYTPEGVKPKDYINGLS----ELKALYREFNSREEAAFKKN 252

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
                          +  K  +        +  G  D  +LC   +        +   + 
Sbjct: 253 -------------PANAEKPYKEQKLQEAFICSGERD--ALCVKSLGFSPIWFNSETYKL 297

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
             +   ++   + + ++  D       K  +L L  +          L+   D     R 
Sbjct: 298 SEQDYKEIMKYVEVLYNIPDIDTTGRVKGTELALRFIDIHTIWLPAWLTTYRD----QRG 353

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             +  F   +       D                  ++     +   ++I D    +Y+ 
Sbjct: 354 KPRKDFRDFMELRSKNEDFRNLMTLA---MPAKFWYSKFNEKSRQWDHNI-DADCLHYFL 409

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
                RL   +  +    S            +  K    R       +            
Sbjct: 410 -----RLNGFYSLHDENSSSTKYIRITGNIVKLIKAKDIRKFIRGWAQDSFLS------R 458

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNEL 515
            +   ++N P +       L +I  D    
Sbjct: 459 DIRNLILNSPKLSDTALDNLQEIELDFTNY 488


>gi|260819443|ref|XP_002605046.1| hypothetical protein BRAFLDRAFT_124134 [Branchiostoma floridae]
 gi|229290376|gb|EEN61056.1| hypothetical protein BRAFLDRAFT_124134 [Branchiostoma floridae]
          Length = 2797

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/296 (9%), Positives = 85/296 (28%), Gaps = 32/296 (10%)

Query: 362  FIRCYGKTAFEKLIVESL------PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             + C+   + +  + ++          ++  K +             E+E      +  I
Sbjct: 768  HVLCHQVESLKARLEKTQQDLVNVHEENVELKMQLAATRREHLQSYTEMESEQSTYLTQI 827

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +D    ++Y + +   LQ   +   +         +       +   + R   + +   K
Sbjct: 828  EDINQSWHYLRNLNTELQAQLEDQKSRADLTNIQVQTLKNQLTEAKETSRKQDAEIRSLK 887

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQEL----------------ADIRYDNNELQKLW 519
                 S  E  +  + +       E  +E                   +   + +LQK+ 
Sbjct: 888  TKLDISNSEITIGESALKKAQSYLELERERSLAQVEDMKGKVKALEEKLVQSDVQLQKVR 947

Query: 520  SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
              +     + +    E+      +     L+++L  ++ D       +        +  Q
Sbjct: 948  EEMAEKIRQLQNLSKEK----EKDSENSRLVERLMGRIEDLKGRLDESGKEQQQNEERLQ 1003

Query: 580  QALALYKRFRL-----LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            + +   +         L    ++ E+++ +   K + +    +         +I +
Sbjct: 1004 RRMERLQNKYEGEKKFLEETVKDTEERLKETEEKLKVQM-ERVQRDKQRDEEEITE 1058


>gi|194386578|dbj|BAG61099.1| unnamed protein product [Homo sapiens]
          Length = 992

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 62/175 (35%), Gaps = 7/175 (4%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +   Q      KL+     +E  L    ++   + ++     A +     EL  L  
Sbjct: 529 GKEEVEKQHRENIKKLNSMVERQEKDLGRLQVDMDELEEKNRSIQAALDSAYKELTDLHK 588

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +  +        + + +  +   EL   L++   +A     T    + D+R   Q+
Sbjct: 589 A---NAAKDSEAQEAALSREMKAK--EELSAALEKAQEEARQQQETLVIQVGDLRLALQR 643

Query: 581 -ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              A  ++   L  +  E+++++ +   +   E +  + S    +  QI  +++ 
Sbjct: 644 TEQAAARKEDYLRHEIGELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 697


>gi|197294220|ref|YP_001798761.1| Replicative DNA helicase [Candidatus Phytoplasma australiense]
 gi|171853547|emb|CAM11408.1| Replicative DNA helicase [Candidatus Phytoplasma australiense]
          Length = 427

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 46/147 (31%), Gaps = 17/147 (11%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E ALL TL+  P  +      +    + N + + ++  +    ++ +      +   L 
Sbjct: 4   AERALLGTLLLKPEKMDVVINLVNTNNFSNPKHRCIFETMKQLKLQNREIDYVTVGSVLD 63

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                     L +      L      +   +  + Y   +      R L    +++  ++
Sbjct: 64  NN--------LYKIGGIDYLIELVETSPASEYLETYIDLIKENALKRDLLGLIKQLPTEL 115

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIH 629
           +         K+  + + L  V  Q+ 
Sbjct: 116 S---------KSKNIHNYLQAVKTQVE 133


>gi|156120901|ref|NP_001095597.1| myosin-11 [Bos taurus]
 gi|151554905|gb|AAI48030.1| MYH11 protein [Bos taurus]
          Length = 1972

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 87/264 (32%), Gaps = 11/264 (4%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     +     E E        ++ ELE  L      +++++ R    QA R ++ Q  
Sbjct: 893  QEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRSQQLQAERKKMAQQM 952

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                 +        +K    +       + ++  ++          +E  LL   I+   
Sbjct: 953  LDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNKLSKERKLLEERISDLT 1012

Query: 497  I-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEIHQRLCER--GFGELLK 551
              L E+ ++  ++    N+ + + S L       E+     E++ ++L        E + 
Sbjct: 1013 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLDGEASDLHEQIA 1072

Query: 552  QLDRQVRDAGLWSATTEANIV----DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            +L  Q+ +  +  A  E  +      +     Q     K+ R L     ++++ +    A
Sbjct: 1073 ELQAQIAELKMQLAKKEEELQAALGRLDDEMAQKNNALKKIRELEGHISDLQEDLDSERA 1132

Query: 608  KGEAEKTAI--LISILHEVHIQIH 629
                 +     L   L  +  ++ 
Sbjct: 1133 ARNKAEKQKRDLGEELEALKTELE 1156



 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 64/233 (27%), Gaps = 35/233 (15%)

Query: 418  QKLRYYYSQAIRDRL---QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
               +   ++ +   +     L  +     +   +  ++    +         ++ +  + 
Sbjct: 1707 DLEKDELAEELASSVSGRNALQDEKRRLEARIAQLEEELEEEQGNTEAMSERVRKATQQA 1766

Query: 475  KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            +        E +            Q+       +   N EL+     +      +     
Sbjct: 1767 EQLSNELATERS----------AAQKNENARQQLERQNKELRSKLQEMEGAVKSKFKSTI 1816

Query: 535  EEIHQRL---------CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
              +  ++           R      K L ++ +         E       Q  +QA    
Sbjct: 1817 AALEAKIAQLEEQVEQEAREKQATAKALKQKDKKLKEALLQVEDERKMAEQYKEQAEKGN 1876

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIESQEAM 637
             R + L RQ EE E            E++  + +   ++  ++    ES EAM
Sbjct: 1877 LRVKQLKRQLEEAE------------EESQRINANRRKLQRELDEATESNEAM 1917


>gi|281604096|ref|NP_001093955.1| myosin-8 [Rattus norvegicus]
 gi|109491001|ref|XP_001078064.1| PREDICTED: myosin, heavy chain 8, skeletal muscle, perinatal isoform
            2 [Rattus norvegicus]
 gi|149052972|gb|EDM04789.1| rCG34493 [Rattus norvegicus]
          Length = 1937

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVETMQSTLDAEIRSRNDALRVKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1624 DLNEM-EIQLNHANRLAAESLRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAI 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828


>gi|253746261|gb|EET01668.1| Coiled-coil protein [Giardia intestinalis ATCC 50581]
          Length = 1596

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 76/243 (31%), Gaps = 25/243 (10%)

Query: 417  DQKLR-YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
             + +R  +  + +  ++       + + S           +   K     +         
Sbjct: 1338 HEIVRLTHTIERLNKQIVDNAGNEVPQLSTVIEIPPSATNNEIIKNLVNSIRTQEASFTH 1397

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW---------SFLFSDF 526
            +      ++A +L           E+ +++      N    ++          + + +++
Sbjct: 1398 IRTLLKEKQAEVLKL-----KEALERQEDIVRTLLSNPSANRMKTSDSADGNNALILTNY 1452

Query: 527  VEQKYFLPEEIHQRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
             +      +   +           L ++L  +       S   +    D+R+   +A  L
Sbjct: 1453 NDASATDGQAAEEERARFEEKIQRLEEELANKDYVIDSKSHEIDTLRGDLRRLQTEATEL 1512

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKGEAE------KTAILISIL--HEVHIQIHQIESQEA 636
              +   L  Q E+  ++I Q+  +G+        +++ ++      +++ QI  +    +
Sbjct: 1513 RAKINDLEAQLEDARREIEQMQQRGDQGSGDYNHRSSRILDDYTQKDLNEQIKSLYEMLS 1572

Query: 637  MIE 639
              +
Sbjct: 1573 AKD 1575


>gi|198454766|ref|XP_001359712.2| GA15963 [Drosophila pseudoobscura pseudoobscura]
 gi|198132943|gb|EAL28864.2| GA15963 [Drosophila pseudoobscura pseudoobscura]
          Length = 2657

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 83/248 (33%), Gaps = 40/248 (16%)

Query: 402  AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
             ++   + +    +++Q  R    +  + +     Q          +  ++  R +D   
Sbjct: 2066 QKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDASRQERQAKERYGREKDVLQ 2125

Query: 462  PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY---DNNELQKL 518
              +  ++ +L   +L     L+E  L               +EL ++ +      E  +L
Sbjct: 2126 AEKFTLEQTLADTRLD--LDLKEEKLASL-----------QRELEEMTFGGSTEEEFAQL 2172

Query: 519  WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                       +     E   +  E    E+  Q+    +       T E    + R+  
Sbjct: 2173 R----------RSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRES 2222

Query: 579  QQALALYKRFR-LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE----- 632
            QQ     +  R    ++ + +E Q+     + E E+  +L+   HE+  ++  +E     
Sbjct: 2223 QQRDEELEEVRGNGYKKIKALECQL-----ETEHEERTLLLREKHELERRLSSMEDRDRV 2277

Query: 633  ---SQEAM 637
               ++EA+
Sbjct: 2278 DRDAEEAL 2285


>gi|1169358|sp|P11531|DMD_MOUSE RecName: Full=Dystrophin
          Length = 3678

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 76/233 (32%), Gaps = 28/233 (12%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            + L +  +K   +     +  K        K  S R   + L+  +      + E  +  
Sbjct: 1702 ELLDESEKKKPQQKEDILKRLKAEMNDMRPKVDSTRDQAAKLMANRGDHCRKVVEPQISE 1761

Query: 490  T-----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                   I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E 
Sbjct: 1762 LNRRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMSED 1821

Query: 545  G---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQA 581
                  ELL++ D   +         E  I                        +   Q 
Sbjct: 1822 NEGTVNELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQW 1881

Query: 582  LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                ++   L +  +EIEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1882 YQYKRQADDLLKCLDEIEKKLASLPEPRDERKLKEIDRELQKKKEELNAVRRQ 1934



 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 73/250 (29%), Gaps = 6/250 (2%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                F   I E+    ++L     + +         EL    ++    I+     Y+   
Sbjct: 2690 DLEKFLSWITEAETTANVLQDASRKEKLLEDSRGVRELMKPWQDLQGEIETHTDIYHNLD 2749

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
                ++ +  +          R    N +  + +  S  +           K+  L    
Sbjct: 2750 ENGQKILRSLEGSDEAPLLQRRLDNMNFKWSELQKKSLNIRSHLEASSDQWKRLHLSLQE 2809

Query: 487  LLLTL-INHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            LL+ L +    + ++     +   ++  N+  +     L +          E +   L E
Sbjct: 2810 LLVWLQLKDDELSRQAPIGGDFPAVQKQNDIHRAFKRELKTK-EPVIMSTLETVRIFLTE 2868

Query: 544  RGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +    L  L Q  R++         T        +   +   L  R     R+ +E  ++
Sbjct: 2869 QPLEGLEKLYQEPRELPPEERAQNVTRLLRKQAEEVNAEWDKLNLRSADWQRKIDEALER 2928

Query: 602  IAQVTAKGEA 611
            + ++    + 
Sbjct: 2929 LQELQEAADE 2938


>gi|189034|gb|AAC17185.1| perinatal myosin heavy chain [Homo sapiens]
          Length = 1937

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHTRVVETMQSTLDAEIRSRNDALRVKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1624 DLNEM-EIQLNHANRLAAESLRNYRNTQGILKETQLHLDDALRGQEDLKEQ------LAI 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELWATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828


>gi|74220048|dbj|BAE40601.1| unnamed protein product [Mus musculus]
          Length = 729

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 95/255 (37%), Gaps = 12/255 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSG 445
            E +       +   +++      +N +  +  R   ++A  + +R     +K + E   
Sbjct: 353 HEADATLKREQESYKQMQSEFAARLNKM--EVDRQNLAEAVTLAERKYSEEKKKVDELQQ 410

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             +  + +     Q+    +   + +++ K     SL+E +    L +  A   E  +  
Sbjct: 411 QVKLHRASLESAKQELVDYKQKATRILQSKEKLINSLKEGSSFEGLESSTASRMELEELR 470

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +      E+QKL   +     E +    +++ +        E L+ L  Q+        
Sbjct: 471 HEKEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEA---ESAREQLQDLQDQIAKQRTSKQ 527

Query: 566 TTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             E  +  ++Q ++     L++    L  + ++ E++I ++  +   +  +       E+
Sbjct: 528 ELETELERMKQEFRYMEEDLHRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNSSQ--SEL 585

Query: 625 HIQIHQIESQEAMIE 639
             ++HQ+   E +I+
Sbjct: 586 ESRLHQL--TETLIQ 598



 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 79/269 (29%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD----QKLRYYYSQAIRDRLQ 433
           +      + K   +            LE         ++D      L+    Q +++RL 
Sbjct: 294 AKDSQLAVLKVRLQEADQVLSSRTEALEALRSEKSRIMQDHKEGSSLQNQALQTLQERLH 353

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 354 EADATLKREQESYKQMQSEFA---------ARLNKMEVDRQNLAEAVTLAER-------K 397

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    ++  +    ++     L+     L     +        E++   L E    E L+
Sbjct: 398 YSEEKKKVDELQQQVKLHRASLESAKQELVDYKQKATRILQSKEKLINSLKEGSSFEGLE 457

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 458 SSTASRMELEELRHEKEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEAESAREQLQDLQD 517

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   +E
Sbjct: 518 QIAKQRTSK--QELETELERMKQEFRYME 544


>gi|47215788|emb|CAG02584.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1257

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 78/216 (36%), Gaps = 11/216 (5%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             IR +++    +   + S   R   ++ +         +    +L +  L  +   RE A
Sbjct: 890  RIRKKMETDLNEMEIQLSHANRQAAESQKQLKNIQAHLKEQTLNLDEA-LRSQEEQREQA 948

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC---- 542
               T+     ++Q + +EL      +   +KL     +D  E+   L  +    L     
Sbjct: 949  --ATMERRSCLMQAEVEELRAALEQSERSRKLAEQELADACERAGLLHSQNTSLLNTKKK 1006

Query: 543  -ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             +     L  +++  V++A      T+  I D     ++          L R K+ +E  
Sbjct: 1007 LDADMTRLQAEVEEAVQEARNAEEKTKKAINDAAMMAEELKKEQDTSSHLERMKKNLEGS 1066

Query: 602  IAQVTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
            +  +  + +  ++  L      L ++  ++ ++E +
Sbjct: 1067 VKDLQLRLDEAESLALKGGKKQLQKLEARVRELEGE 1102



 Score = 37.9 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 55/169 (32%), Gaps = 19/169 (11%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           IN   +      +L+D +  ++E   L + +  +  + K         RL E     L +
Sbjct: 520 INFEKLCHSLEDQLSDFKTKHDENTHLINEI--NTQKAKLQNENGEVSRLLEEKEAVLSQ 577

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQ--GYQQALALYKRFRLLSRQK----EEIEKQIAQV 605
            L  +V  +            + +       AL   +    L R++    +E + ++ + 
Sbjct: 578 ALRAKVAFSQQVEELKRQIEEEAKAKSALAHALQSARHDCDLLREQFEEEQEAKAELQRA 637

Query: 606 TAKGEAEKTA----------ILISILHEVHIQI-HQIESQEAMIEGFGK 643
            +K  +E                  L E   ++  +++  E  ++    
Sbjct: 638 MSKANSEVAQWRVKYETDAIQRNEELEEAKKKLVQRLQEAEEAVKAMNA 686


>gi|2460124|gb|AAB80727.1| putative transcription factor CA150 [Homo sapiens]
          Length = 1098

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 631 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 690

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 691 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 738

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 739 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 787

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 788 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 847

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 848 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 900


>gi|13928704|ref|NP_113708.1| myosin-10 [Rattus norvegicus]
 gi|13431672|sp|Q9JLT0|MYH10_RAT RecName: Full=Myosin-10; AltName: Full=Cellular myosin heavy chain,
            type B; AltName: Full=Myosin heavy chain 10; AltName:
            Full=Myosin heavy chain, non-muscle IIb; AltName:
            Full=Non-muscle myosin heavy chain B; Short=NMMHC-B;
            AltName: Full=Non-muscle myosin heavy chain IIb;
            Short=NMMHC II-b; Short=NMMHC-IIB
 gi|7381235|gb|AAF61445.1|AF139055_1 nonmuscle myosin heavy chain-B [Rattus norvegicus]
          Length = 1976

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 100/288 (34%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + ++ ++
Sbjct: 876  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEGEE 935

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 936  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEVLLLEDQNS 995

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 996  KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1049

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  QV +  +     E    +++    +        
Sbjct: 1050 RQELEKAKRKLDGETTDLQDQIAELQAQVDELKVQLTKKE---EELQGALARGDDETLHK 1106

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1107 NNALKVARELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1154



 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 83/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L   ++     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1391 EEAKKKLLKDVEALSQRLEEKVLAYDKLEKTKNRLQQELDDLTVDLDHQRQIVSNLEKKQ 1450

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1451 KKFDQLLAEEKGISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1505

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1506 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1565

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1566 EVNMQAMKAQFERDLQTRDEQNEEKKRLLLKQVRELEAELEDERKQRALAVASKKKMEID 1625

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1626 LKDLEAQIEA 1635


>gi|55823883|ref|YP_142324.1| replicative DNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|116628657|ref|YP_821276.1| replicative DNA helicase [Streptococcus thermophilus LMD-9]
 gi|55739868|gb|AAV63509.1| DNA polymerase III delta prime subunit [Streptococcus thermophilus
           CNRZ1066]
 gi|116101934|gb|ABJ67080.1| primary replicative DNA helicase [Streptococcus thermophilus LMD-9]
 gi|312279311|gb|ADQ63968.1| DNA polymerase III delta prime subunit [Streptococcus thermophilus
           ND03]
          Length = 453

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/142 (9%), Positives = 42/142 (29%), Gaps = 6/142 (4%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              + ++     + E ++L  +  +P  L    + +    +     + ++  + +     
Sbjct: 3   EAQELRVQPHDLVAEQSVLGAIFINPEKLITVREFIEADDFYKYSHRVIFKAMVTLSDRN 62

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                  +   L ++        L      + L             + Y + +A     R
Sbjct: 63  DAIDATTVRTILDDQ------DDLQNIGGISYLVDLVNSVPTSANAEYYAKIVAEKAMLR 116

Query: 590 LLSRQKEEIEKQIAQVTAKGEA 611
            +  +  EI  Q  + T + + 
Sbjct: 117 RIINRLTEIVNQAYEGTTESDE 138


>gi|316974837|gb|EFV58309.1| ATP-dependent RNA helicase abstrakt [Trichinella spiralis]
          Length = 1902

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 89/286 (31%), Gaps = 23/286 (8%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           I+    T ++  +VE    +    ++  +       + R      +      I+   L  
Sbjct: 302 IQLQQLTEYKNRMVEVHSELQRQLQQAKKEAR-EAIESREAYSEEMAGVSEAIEMATLDK 360

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
             ++   + L Q                +      +  G       +     +L ++   
Sbjct: 361 EMAEERAEMLCQELDVVKDRVRELEVELEILKNELNANGAPNSETPTPYQIKQLEQQNDR 420

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            + AL+        +     QE A     N EL  L + +     +           ++ 
Sbjct: 421 MKEALVK-------VRDLSVQERATNERLNKELGVLKADMAELQKKYDRL-------KIA 466

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           E  F   + +L  QV DA + +     ++       ++ L           Q   +++++
Sbjct: 467 EEDFENQITELKDQV-DAAVGAEEMVEHLTAKNLSLEEELRTLMETIEDFEQMRVVDEEL 525

Query: 603 AQVTAKGEAEKTAIL---ISILHEVHIQIH----QIESQEAMIEGF 641
            + + + E E    L      + E+  Q+     ++  +E++I  F
Sbjct: 526 QESSRETEKELRLELDRMHGQITELKQQLQLANSRMADRESIIAKF 571


>gi|225561854|gb|EEH10134.1| RNA polymerase Rpb1 C-terminal repeat domain-containing protein
           [Ajellomyces capsulatus G186AR]
          Length = 1389

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/351 (9%), Positives = 108/351 (30%), Gaps = 33/351 (9%)

Query: 284 LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343
            +      +   + + +    Y +  +   +  ++   +G     +   K    V  +  
Sbjct: 372 AAAHHYLHEPSPAPISSPHYSYNIPGVHPYANPMIPPHNGVSFDPQMVGKMAVTVPSYHT 431

Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
           P              P    R   + ++ +   ++    D    RE         ++  +
Sbjct: 432 PVRSSTMDSPYT---PYHHARRSSRASYGRGYADAYYNNDYGPVREPAPVQPPVIEDGRD 488

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
              + +     +  +         I   +     +     +    + +  A+H +     
Sbjct: 489 ASKNGEGLNISLLSRI--QSIIPDISQLVISYRDQQTQLSAREAEHKQIEAQHEESLMRK 546

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           +  +++   + + +   S +E               +    + ++R++   LQ+    + 
Sbjct: 547 EYYIEALQTQMQKTANESAKE-------------CSKLKGRINELRFELGGLQEKQKDVE 593

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               + +    E    +L E    +L +++D   R         E  +   R+  ++A  
Sbjct: 594 ESLADAQKENDE--LSQLRE----DLQEEIDNLQRAIQEEKEAHEQELERQREKEKEA-- 645

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                  L  QK+++E    ++  + +      L +   E+  +  +++++
Sbjct: 646 -------LDNQKQDLEGYFQEIKNEDDRLAAEQLQAREQELTDERDKLKAE 689


>gi|195157128|ref|XP_002019448.1| GL12404 [Drosophila persimilis]
 gi|194116039|gb|EDW38082.1| GL12404 [Drosophila persimilis]
          Length = 2658

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 83/248 (33%), Gaps = 40/248 (16%)

Query: 402  AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
             ++   + +    +++Q  R    +  + +     Q          +  ++  R +D   
Sbjct: 2067 QKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDASRQERQAKERYGREKDVLQ 2126

Query: 462  PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY---DNNELQKL 518
              +  ++ +L   +L     L+E  L               +EL ++ +      E  +L
Sbjct: 2127 AEKFTLEQTLADTRLD--LDLKEEKLASL-----------QRELEEMTFGGSTEEEFAQL 2173

Query: 519  WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                       +     E   +  E    E+  Q+    +       T E    + R+  
Sbjct: 2174 R----------RSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRES 2223

Query: 579  QQALALYKRFR-LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE----- 632
            QQ     +  R    ++ + +E Q+     + E E+  +L+   HE+  ++  +E     
Sbjct: 2224 QQRDEELEEVRGNGYKKIKALECQL-----ETEHEERTLLLREKHELERRLSSMEDRDRV 2278

Query: 633  ---SQEAM 637
               ++EA+
Sbjct: 2279 DRDAEEAL 2286


>gi|189234753|ref|XP_974490.2| PREDICTED: similar to STE20-like kinase (yeast) [Tribolium castaneum]
          Length = 1819

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 104/330 (31%), Gaps = 29/330 (8%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            V+C D D+  L   +      L  L    +            ++         FE+  V 
Sbjct: 1385 VICPDEDNYNLADLHNDRKQELRELKYLQKQEQKQFQDLAFKENLTLEQQDKKFEQERVN 1444

Query: 378  SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
                 +   +  +  +        A  +  L+     I+ ++ R    +  RD L+Q  +
Sbjct: 1445 LERTYENDLEMLSRQQRMQIEKAEAHQDAELRAMSKKIRGEQERE--LKIFRDGLKQELR 1502

Query: 438  KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA- 496
                E     +  +K               +  L K K+      RE A L  L  +   
Sbjct: 1503 LLKAEIDLLPKERRK--------------AEFKLRKEKMDADHLEREKAFLEKLNENHES 1548

Query: 497  ----ILQEQYQELADIRYDN----NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-- 546
                +     +++A +         +L +       +  E++     ++ +R  +  F  
Sbjct: 1549 SLRRLSDSHREKIALMERQFLQQKQQLTRTREAALWEIEERQIHEKHQLMKRQIKEIFIL 1608

Query: 547  --GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               ++L + +++       +A  E  ++  +   +++L    R  + +R+    E     
Sbjct: 1609 QRHQMLTRHEKEKEQIKRRAARKEEELLKKQAAEKRSLPKRIRTEMKARELMFRESMRIS 1668

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++   + E          E   + +Q E Q
Sbjct: 1669 ISGTNDPEAEKNKFKEFQEKEKKRYQAEQQ 1698


>gi|167999129|ref|XP_001752270.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696665|gb|EDQ83003.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 479

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 64/163 (39%), Gaps = 7/163 (4%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRL 541
           E +L   L     I+++Q +++ D++  +      +S L   F E +       ++ + L
Sbjct: 263 EFSLKQVLEEKDKIIEDQKKKIGDLQRASVTDSLKYSRLEHQFKETQAEWAKENKLAKSL 322

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            E    E ++  ++   +    +             ++Q+ +L      L R+  E+E +
Sbjct: 323 MELTKQECMELRNQYQEEKNRVAELEAGRSKLEDDFWRQSESLKMENEQLKRRIAELEAE 382

Query: 602 I-----AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +      Q      +     L   +H +  Q+ + ++Q A++E
Sbjct: 383 MITVTTQQGEVNPTSTSLRELEKQVHALEEQLKERDTQIALLE 425


>gi|149408714|ref|XP_001505615.1| PREDICTED: similar to F-box protein FBX22p44 [Ornithorhynchus
           anatinus]
          Length = 1400

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 97/288 (33%), Gaps = 39/288 (13%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
           + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 696 MSEKQIKQENNHLIEIKLSLEKQNGELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 755

Query: 427 AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
            +++      +L +  Q+ I E                 K  S++L +S   +    L K
Sbjct: 756 ELKEECEEKIKLCKEMQQKIQELQDEKDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 815

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +  ++E  +   +  H   L E+   +  +       + L S + +   E++    +   
Sbjct: 816 EKIMKELEIKEMMARHKQELTEKDATIGSLE---EANRTLTSDVANLANEKEELNNKA-- 870

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
                +   E + +L  +     +  A  E  +++ R    QA+     +  R   + R 
Sbjct: 871 -----KEIQEQISRLKDEETSVSIIKAQYEKQLLNERTLKTQAVNKLAEIMNRKDPVKRG 925

Query: 594 -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                +++E E +   +  K E EK   ++        +++++++Q A
Sbjct: 926 ADTDVRRKEKENRKLHMELKSEREKLTQMMIKY---QKEMNEMQAQIA 970


>gi|148706803|gb|EDL38750.1| mCG13712, isoform CRA_b [Mus musculus]
          Length = 903

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 64/169 (37%), Gaps = 9/169 (5%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKY 531
           K ++ ++  LRE  L          +    QE+  +R     + ++L   +     +   
Sbjct: 472 KQRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAA 531

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              E   ++       EL ++L+    + G W +  + N  ++R   Q+ L L      +
Sbjct: 532 LEAE---RQKMSSLVRELQRELEETSEETGHWQSMFQKNKEELRATKQELLQLRMEKEEM 588

Query: 592 SRQKEE----IEKQIAQVTAK-GEAEKTAILISILHEVHIQIHQIESQE 635
             +  E    +++ + Q  A   +  +   L   L     ++ ++++++
Sbjct: 589 EEELGEKMEVLQRDLEQARASTRDTHQVEELKKELRRTQGELKELQAEQ 637


>gi|118381939|ref|XP_001024129.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila]
 gi|89305896|gb|EAS03884.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila SB210]
          Length = 1671

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 60/536 (11%), Positives = 153/536 (28%), Gaps = 28/536 (5%)

Query: 107  IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSR 166
              +  + Q +   L + +     + LK    K++     +   DS   +        D  
Sbjct: 850  NSQISQKQKEYEELNKKSQQV-ENRLKTDNAKQVTELQSQLQKDSEKYKKRLAQLETDLA 908

Query: 167  YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
                    Q         +  L                ++       +  V+    R  +
Sbjct: 909  NKQSVLQNQTKDFNNVKRDLDL---KHEEYEKVQYELQQVQNERDRLKKDVMNLKNRIEN 965

Query: 227  KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286
              ++V+        L  + + L N       + + I+KD ++       L +    V SL
Sbjct: 966  LDQTVEKNRLEIQQLNKQNQALNNE---KQSISEDIQKDKQQVQDLQKRLTQILDSVKSL 1022

Query: 287  CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
                 + +       L   + ++      + V     +            +     I   
Sbjct: 1023 ESERSRLLSQIESQKLDLDKKKIEIDNLNKQVYEQSNERAQQLEKLMESQMNEKLKISAL 1082

Query: 347  RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
                 +     D     +   K    +  +++      +  +  E +     +   ++E 
Sbjct: 1083 NEQVQIYKIEID-----QFKTKMQILEADIQARDEKIKILNKNIETQKITIDENDKKIES 1137

Query: 407  HLKNCINHIKDQKLRYYYSQAIRDRLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
             +      I + + +      +   ++Q L +  I + +   +  +   +  + K   +R
Sbjct: 1138 LVSEQSKVIAENEQKNQLITNLNAAIEQALIECEIQQKNANSKKVELEEKQEEYKHELER 1197

Query: 466  LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
            L       G+       RE               +  + +  I   N+ L +      + 
Sbjct: 1198 LQNEINELGRNLATCKERER----------ETNNKNVELIQQIEEANHNLNQ-KEQELNQ 1246

Query: 526  FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
             VE+       I+    E    +L   L  +           +     +    +Q L   
Sbjct: 1247 IVEEMNLNKNHINS--NEMSLKQLNLDLKERDDYVSNLQDEVKNLTQQLEDLQRQDLQNQ 1304

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            +    L+ Q  +++  +  +  K +    KT  L+  + ++   + Q+  ++ +IE
Sbjct: 1305 QEIENLNSQINKLKNNLNSMEDKNQELQSKTNNLLQNVIDLQSSLQQLRVEKELIE 1360


>gi|6681203|ref|NP_031894.1| dystrophin [Mus musculus]
 gi|1388028|gb|AAB02797.1| dystrophin major muscle isoform [Mus musculus]
 gi|122890091|emb|CAM14696.1| dystrophin, muscular dystrophy [Mus musculus]
 gi|122890577|emb|CAM14885.1| dystrophin, muscular dystrophy [Mus musculus]
 gi|123208007|emb|CAM17038.1| dystrophin, muscular dystrophy [Mus musculus]
 gi|123208204|emb|CAM20240.1| dystrophin, muscular dystrophy [Mus musculus]
 gi|123209295|emb|CAM26197.1| dystrophin, muscular dystrophy [Mus musculus]
 gi|123219019|emb|CAM22949.1| dystrophin, muscular dystrophy [Mus musculus]
 gi|123229017|emb|CAM24749.1| dystrophin, muscular dystrophy [Mus musculus]
 gi|123229960|emb|CAM15174.1| dystrophin, muscular dystrophy [Mus musculus]
 gi|123231557|emb|CAM26796.1| dystrophin, muscular dystrophy [Mus musculus]
 gi|123231928|emb|CAM22468.1| dystrophin, muscular dystrophy [Mus musculus]
 gi|123233142|emb|CAM20576.1| dystrophin, muscular dystrophy [Mus musculus]
 gi|123251289|emb|CAM15656.1| dystrophin, muscular dystrophy [Mus musculus]
 gi|123263587|emb|CAM16090.1| dystrophin, muscular dystrophy [Mus musculus]
 gi|123857773|emb|CAM15349.1| dystrophin, muscular dystrophy [Mus musculus]
          Length = 3678

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 76/233 (32%), Gaps = 28/233 (12%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            + L +  +K   +     +  K        K  S R   + L+  +      + E  +  
Sbjct: 1702 ELLDESEKKKPQQKEDILKRLKAEMNDMRPKVDSTRDQAAKLMANRGDHCRKVVEPQISE 1761

Query: 490  T-----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                   I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E 
Sbjct: 1762 LNRRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMSED 1821

Query: 545  G---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQA 581
                  ELL++ D   +         E  I                        +   Q 
Sbjct: 1822 NEGTVNELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQW 1881

Query: 582  LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                ++   L +  +EIEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1882 YQYKRQADDLLKCLDEIEKKLASLPEPRDERKLKEIDRELQKKKEELNAVRRQ 1934



 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 73/250 (29%), Gaps = 6/250 (2%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                F   I E+    ++L     + +         EL    ++    I+     Y+   
Sbjct: 2690 DLEKFLSWITEAETTANVLQDASRKEKLLEDSRGVRELMKPWQDLQGEIETHTDIYHNLD 2749

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
                ++ +  +          R    N +  + +  S  +           K+  L    
Sbjct: 2750 ENGQKILRSLEGSDEAPLLQRRLDNMNFKWSELQKKSLNIRSHLEASSDQWKRLHLSLQE 2809

Query: 487  LLLTL-INHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            LL+ L +    + ++     +   ++  N+  +     L +          E +   L E
Sbjct: 2810 LLVWLQLKDDELSRQAPIGGDFPAVQKQNDIHRAFKRELKTK-EPVIMSTLETVRIFLTE 2868

Query: 544  RGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +    L  L Q  R++         T        +   +   L  R     R+ +E  ++
Sbjct: 2869 QPLEGLEKLYQEPRELPPEERAQNVTRLLRKQAEEVNAEWDKLNLRSADWQRKIDEALER 2928

Query: 602  IAQVTAKGEA 611
            + ++    + 
Sbjct: 2929 LQELQEAADE 2938


>gi|15835398|ref|NP_297157.1| replicative DNA helicase [Chlamydia muridarum Nigg]
 gi|270285577|ref|ZP_06194971.1| replicative DNA helicase [Chlamydia muridarum Nigg]
 gi|270289587|ref|ZP_06195889.1| replicative DNA helicase [Chlamydia muridarum Weiss]
 gi|301336973|ref|ZP_07225175.1| replicative DNA helicase [Chlamydia muridarum MopnTet14]
 gi|7190811|gb|AAF39587.1| replicative DNA helicase [Chlamydia muridarum Nigg]
          Length = 472

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 6/142 (4%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           + +  +    +          E  +L  ++ +   L      L +  +   E + ++  L
Sbjct: 2   ATQTKKPHSPQLLSLPNSKESEMIVLGCMLTNVNHLNLAANLLQEEDFYFLEHRIIFRVL 61

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
              F   +   P      L          QL+     + L + +  A      + Y   +
Sbjct: 62  QDAFKSDRPMDP-----HLTGEELKRR-DQLNVIGGASYLITLSEFAGTSAYIEEYADII 115

Query: 583 ALYKRFRLLSRQKEEIEKQIAQ 604
                 R + +  ++IEK+ A+
Sbjct: 116 RSKSILRKMIQAAKDIEKKAAE 137


>gi|148263769|ref|YP_001230475.1| DNA repair protein RecN [Geobacter uraniireducens Rf4]
 gi|146397269|gb|ABQ25902.1| DNA replication and repair protein RecN [Geobacter uraniireducens
           Rf4]
          Length = 553

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 85/281 (30%), Gaps = 37/281 (13%)

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
           +R       +        E HL     +    +LR  YS    +       + +      
Sbjct: 122 RRLINIYGQHEAQTLLRTENHLLLLDGYGGLLQLRDEYSAIFDE------YRRVAAEIRG 175

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT---LINH--------- 494
               ++ A  R      Q     +       ++  L+E  LL     L+ H         
Sbjct: 176 LEEGEREADRRLDLLSFQSHEIGAAALAAGEEEALLQERQLLSHAEKLLQHSQEAFTELY 235

Query: 495 ------PAILQEQYQELADIRYDNNELQKLWSFLFSDFV--EQKYFLPEEIHQRLCERGF 546
                    L E  + +A++   +     L + + +  +  E       +   R+     
Sbjct: 236 GADHAVLDRLAEVKRRVAEVTAVDPSTGNLLASIEAASIQLEDAALSLRDYAARIEADPR 295

Query: 547 G--------ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                    E++++L ++   A       +  I    + +++          L ++  E+
Sbjct: 296 RLQVVEDRLEIIQRLKKKYAPAVEEIIAYKDEIDREIEAFRRREESR---DGLEKRLAEL 352

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           E+ +     +   +++     +   +  ++ ++  + A+ E
Sbjct: 353 EEALRAKGEELSGKRSEAAQLLKAAMEKELSELAMRHALFE 393


>gi|71416212|ref|XP_810145.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874635|gb|EAN88294.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1216

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 94/279 (33%), Gaps = 23/279 (8%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P+         A +  +  SL  +    KR  E +  +       +   L +     K  
Sbjct: 688 PNRINAQEEYDALKSFVDNSLKPLISRLKRTNEEKELDLRANEERIRQLLHDKEQLQKQL 747

Query: 419 KLRYY----YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
             R       +Q   D L+      +       +      +  D +   +R+ Q    K 
Sbjct: 748 ATREAPSRINAQEEYDALKSFVDNSLKPLISRLKRT-NEEKELDLRANEERIRQLLHDKE 806

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L K+ + REA         P+ +  Q +  A   + +N L+ L S L     E+K    
Sbjct: 807 QLQKQLATREA---------PSRINAQEEYDALKSFVDNSLKPLISRL-ERTNEEKELDL 856

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                R  E    +LL   ++  +      A +  N  +     +  +    +  L+SR 
Sbjct: 857 -----RANEERIRQLLHDKEQLQKQLAAREAPSRINAQEEYDALKSFVDNSLK-PLISRL 910

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +   E++  ++  +   E+   L+    ++  Q+   E+
Sbjct: 911 ERTNEEK--ELDLRANEERIRQLLHDKEQLQKQLAAREA 947



 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 82/270 (30%), Gaps = 14/270 (5%)

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
            +           M    +T+    +   E+ E   HL N ++ +K Q +R    + ++ 
Sbjct: 620 IQAHNENQSASRSMQDNPKTKTDGPSAIMEKNEKIAHLSNELDSVKRQNVR--LQKELKK 677

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             +QL  +           +       D              + K     +  E   +  
Sbjct: 678 INEQLAAREAPNRINAQEEYDALKSFVDNSLKPLISRLKRTNEEKELDLRANEER--IRQ 735

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF---- 546
           L++    LQ+Q          N   Q+ +  L S        L   + +   E+      
Sbjct: 736 LLHDKEQLQKQLATREAPSRIN--AQEEYDALKSFVDNSLKPLISRLKRTNEEKELDLRA 793

Query: 547 -GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK--QIA 603
             E ++QL           AT EA      Q    AL  +     L      +E+  +  
Sbjct: 794 NEERIRQLLHDKEQLQKQLATREAPSRINAQEEYDALKSFVD-NSLKPLISRLERTNEEK 852

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++  +   E+   L+    ++  Q+   E+
Sbjct: 853 ELDLRANEERIRQLLHDKEQLQKQLAAREA 882



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 88/279 (31%), Gaps = 23/279 (8%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P          A +  +  SL  +    KR  E +  +       +   L +     K  
Sbjct: 753  PSRINAQEEYDALKSFVDNSLKPLISRLKRTNEEKELDLRANEERIRQLLHDKEQLQKQL 812

Query: 419  KLRYY----YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
              R       +Q   D L+      +              +  D +   +R+ Q    K 
Sbjct: 813  ATREAPSRINAQEEYDALKSFVDNSLKPLISRLERT-NEEKELDLRANEERIRQLLHDKE 871

Query: 475  KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            +L K+ + REA         P+ +  Q +  A   + +N L+ L S L     E+K    
Sbjct: 872  QLQKQLAAREA---------PSRINAQEEYDALKSFVDNSLKPLISRL-ERTNEEKELDL 921

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                 R  E    +LL   ++  +      A +  N  +     +  +    +   L  +
Sbjct: 922  -----RANEERIRQLLHDKEQLQKQLAAREAPSRINAQEEYDALKSFVDNSLK--PLISR 974

Query: 595  KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             +    +  ++  +   E+   L+    ++  Q+   E+
Sbjct: 975  LKRTNGE-KELDLRANEERIRQLLHDKEQLQKQLAAREA 1012


>gi|312221113|emb|CBY01054.1| hypothetical protein [Leptosphaeria maculans]
          Length = 647

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 2/109 (1%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             R      ++L  +   AG+ +A       + ++          + R L  +++E+   
Sbjct: 25  RSRTLENRQRELQAEANQAGITAAKLSQMEDEYKKLQLSYDESNAKMRHLQEEEKELRAS 84

Query: 602 IAQVTAKGEAEKTAILISI--LHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           + + T   E  K    ++      +  Q+ +++ Q  +++  G ++G L
Sbjct: 85  LKRTTEDLEQSKRRSNVTETEKMSLRQQLAELQEQVELMKRSGPINGEL 133


>gi|301794227|emb|CBW36647.1| ABC transporter ATP-binding protein [Streptococcus pneumoniae
           INV104]
 gi|332202971|gb|EGJ17039.1| ABC transporter family protein [Streptococcus pneumoniae GA47901]
          Length = 633

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 10/126 (7%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           + + +             +    + ++   E+  Q +          A+   +    ++ 
Sbjct: 506 VATHVLELSENGSTLYLGDYDYYVEKKATAEM-SQTEEASTSNQAKEASPVNDYQAQKES 564

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIA----QVTAKGEAEKTAILISILHEVHIQIHQIES 633
            ++   L ++   L  + EE+E Q      Q+    +A+K   L + L ++  +      
Sbjct: 565 QKEVRKLMRQIESLEAEIEELESQSQAISEQMLETNDADKLMELQAELDKISHR-----Q 619

Query: 634 QEAMIE 639
           +EAM+E
Sbjct: 620 EEAMLE 625


>gi|290996518|ref|XP_002680829.1| myosin [Naegleria gruberi]
 gi|284094451|gb|EFC48085.1| myosin [Naegleria gruberi]
          Length = 1891

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/261 (10%), Positives = 84/261 (32%), Gaps = 11/261 (4%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
             +    +  D+    E  ++N    +KD +      +           +  T+     R 
Sbjct: 887  LQQMMRDMKDKIQNRESEMENLNGSLKDGESAMNNLRRDLQNKDFEMNQLKTQLDQAKRQ 946

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN---------HPAILQE 500
                     Q+G S + M+  L +     +    E  +    +N            ++ +
Sbjct: 947  LSDKDVEVLQRGKSVQEMKEELERALNELEDVKTELNITKNTLNSSDYSLDQTRQEMIDK 1006

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
            + +         +  +K+          +      E+     ++      ++LD++ R+ 
Sbjct: 1007 ERKLRERDNEIIDYKRKVQDMEQDLRKNEIDKNELELQSNSMKKQLDTFQQELDKKTREF 1066

Query: 561  GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA--QVTAKGEAEKTAILI 618
                     N     Q + +     ++   L ++  E+ +Q+   +   +    ++  L 
Sbjct: 1067 DQLRKQKLTNDQQSEQLFGELEEEKRKRNDLEKKSRELAQQLDTERFDKERIESQSKDLS 1126

Query: 619  SILHEVHIQIHQIESQEAMIE 639
            + + E+  +I  ++ + + +E
Sbjct: 1127 NEIDELKREIASLKLRISELE 1147



 Score = 37.2 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 90/263 (34%), Gaps = 17/263 (6%)

Query: 373  KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
            +   +          ++ E+      +  ++L    ++  N  KD+    +    +  ++
Sbjct: 1183 QREKQRTQDEISNLSQKLEDTRKRMEETESKLNSSDRDVRNLKKDKTQLEHDKSDLELKV 1242

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
            ++L  +  + ++      ++     ++K      ++   ++   SK+   RE +   +  
Sbjct: 1243 KRLESEVKSSNTDQDNTKQQLQESENRKRELMNRIRDVELELNNSKEELSREKS--KSST 1300

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                +  +    L  +  D  +L  L S L     +Q+Y L +E              ++
Sbjct: 1301 QSSEL-NQNRDRLTQLESDLTQLDLLKSKLEKQVRDQQYDLDQE----------KNQTQK 1349

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
            L   +          ++    +     Q     +  + L  Q E++  Q++   +    E
Sbjct: 1350 LRSDLEFLRRSETEYKSKSEVLESTLAQ---REQELKNLRDQLEQLRSQLSD-NSNISEE 1405

Query: 613  KTAILISILHEVHIQIHQIESQE 635
                +  +  ++  Q+ Q++  E
Sbjct: 1406 AQKQIKKMKDDLKKQLEQLQESE 1428


>gi|225858924|ref|YP_002740434.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae 70585]
 gi|225720896|gb|ACO16750.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Streptococcus pneumoniae 70585]
          Length = 633

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 10/126 (7%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           + + +             +    + ++   E+  Q +          A+   +    ++ 
Sbjct: 506 VATHVLELSENGSTLYLGDYDYYVEKKATAEM-SQTEEASTSNQAKEASPVNDYQAQKES 564

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIA----QVTAKGEAEKTAILISILHEVHIQIHQIES 633
            ++   L ++   L  + EE+E Q      Q+    +A+K   L + L ++  +      
Sbjct: 565 QKEVRKLMRQIESLEAEIEELESQSQAISEQMLETNDADKLMELQAELDKISHR-----Q 619

Query: 634 QEAMIE 639
           +EAM+E
Sbjct: 620 EEAMLE 625


>gi|307151663|ref|YP_003887047.1| band 7 protein [Cyanothece sp. PCC 7822]
 gi|306981891|gb|ADN13772.1| band 7 protein [Cyanothece sp. PCC 7822]
          Length = 453

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 42/117 (35%), Gaps = 5/117 (4%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ--Q 580
                 Q      +    L       +++  +    DA   +   EA   +  +  +   
Sbjct: 210 IDVLKIQNVADDVDYLNSLSRERIALIIRDAEIGESDALSEAEQIEAECEEQAEVAKTQD 269

Query: 581 ALALYKRFRLLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            + + ++   L + K ++E+Q     ++T     E+ A +   L EV  ++ ++  Q
Sbjct: 270 QIIILEKENELRKIKAKLEQQAKSEEEITIAAAKERRAKVEQKLQEVRAELERLRLQ 326


>gi|197294236|ref|YP_001798777.1| Replicative DNA helicase [Candidatus Phytoplasma australiense]
 gi|171853563|emb|CAM11429.1| Replicative DNA helicase [Candidatus Phytoplasma australiense]
          Length = 396

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 31/150 (20%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  LL  L+ +P        ++    + N +++ +++ L   + ++K +   +++  L  
Sbjct: 7   EHVLLKFLLLNPQQFASIINKININDFQNPKVKYIYNLLLDFYKQKKIWDLNKMNSFLT- 65

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE--EIEKQ 601
                                          +Q  +  L L  +   L +  E  +  ++
Sbjct: 66  -------------------------KIPESKQQNVKNYLNLIIKKIPLCQLLEVDDYIQR 100

Query: 602 IAQVTAKGEAE---KTAILISILHEVHIQI 628
           I +  ++ E E   K   L     ++   I
Sbjct: 101 IQKDNSEKEIEQAFKATSLFETPKDLMRNI 130


>gi|148807382|gb|ABR13456.1| replicative DNA helicase [Pseudomonas aeruginosa]
          Length = 448

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 48/153 (31%), Gaps = 12/153 (7%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  L+   A       +L    +  +E + +++ +     +   F    + + + 
Sbjct: 14  AEQGVLGGLMLDNAAWDIVGDQLQKEDFFRHEHRLIFTAISELAAKDAPFDVVTVSEAIE 73

Query: 543 ERGFGELLKQLDRQV-RDAGLWSATTEANIVDVRQGYQQALALYKRFR-----------L 590
           +      L  L +       + +    A IV  R   +Q ++L                 
Sbjct: 74  DLPEAGGLAYLGQLADNTPSVANIEAYAQIVRDRAHLRQLMSLGHHCTRTASNHQANPSE 133

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
           +  + E+    + Q   K +       ++ + +
Sbjct: 134 VQEEIEQKLFALGQDQHKSDFVDINKGLAKIVD 166


>gi|109948091|ref|YP_665319.1| hypothetical protein Hac_1611 [Helicobacter acinonychis str.
           Sheeba]
 gi|109715312|emb|CAK00320.1| CUP0976-like hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 383

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 51/118 (43%), Gaps = 10/118 (8%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  +L + +++P  ++   ++++   + +   QK+ + L      ++    E I  +L E
Sbjct: 2   ENLILKSFLDYPERMEVFLEDISLKSF-DPFHQKIINALLEMKNNEQVIRLETIRLKLGE 60

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
           + F               +  A +  + +D++  ++  L L K+   L+++  E  ++
Sbjct: 61  KAFESQA--------FQEILEADSYPDYLDLKSDFKTHLYL-KKQESLAKELLEATRK 109


>gi|108803694|ref|YP_643631.1| primary replicative DNA helicase [Rubrobacter xylanophilus DSM
           9941]
 gi|108764937|gb|ABG03819.1| primary replicative DNA helicase [Rubrobacter xylanophilus DSM
           9941]
          Length = 443

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 41/122 (33%), Gaps = 10/122 (8%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A++  ++   A +    + LA   + +   + +++ +   +   +      +   L 
Sbjct: 8   AERAVIGAMLVSEAAVAAVAERLAPEDFYSETHRVIYAAMMRLYARGEPIDQLTLANELQ 67

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           + G        D+    A ++              Y + +    R + L R   ++  +I
Sbjct: 68  KVG------DFDKVGGRAYIFQIVESVPTASNASRYAEIV----RGKALLRALIDVGSRI 117

Query: 603 AQ 604
            +
Sbjct: 118 TE 119


>gi|54295326|ref|YP_127741.1| effector protein B, substrate of the Dot/Icm secretion system
            [Legionella pneumophila str. Lens]
 gi|53755158|emb|CAH16651.1| effector protein B, substrate of the Dot/Icm secretion system
            [Legionella pneumophila str. Lens]
          Length = 1294

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 89/274 (32%), Gaps = 38/274 (13%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
             +    + I +   L D   +   +     T           K   +  +  + +    +
Sbjct: 871  HQEETIERITKEKSLADSALESLRKEMHELTRKNEENQLKLTKQVHSLSEQLEEKQLQIR 930

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ----KGPSQRLMQSSLVKGKLSKKPSL 482
                +LQ+  ++            +  A  R+Q    K   Q+L +    K K S   S 
Sbjct: 931  EFEKQLQEKEKRVEQSEKEKASEKRTVASLREQVSNLKLQLQQLGEVIQEKEKGSSLISQ 990

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            +   ++        I+++Q ++L +++    ++Q+L S       + +    E +H +  
Sbjct: 991  QSKQIIAL----QEIVEDQKRQLEELKI---KIQELVSANQELGKQNQSLSKENLHNKNT 1043

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                 + L +L+ Q+      S   E  I  +R+                         I
Sbjct: 1044 VEDLEKKLTELNVQLEQLHQSSNEKEQTIRKLREEL-----------------------I 1080

Query: 603  AQVTAKGEAEKTAILISILHE----VHIQIHQIE 632
             + ++  + E+  +    L E    +  +I Q +
Sbjct: 1081 KKDSSLKQNEEMQLAQKHLQEEIDRLQKEIKQQQ 1114



 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 84/226 (37%), Gaps = 22/226 (9%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           +    ++ +L +  I+  S   +   +           +   Q      + S+       
Sbjct: 619 KKTAGQIDELQKIVISLQSKIKKQTIEFEELEATLIQIKEKYQLLEKMAEQSEHEKSSAQ 678

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
           +++ +L      L+ Q QE   +++    L++L   +       K    E   Q+     
Sbjct: 679 SIIRSLNLELGQLKLQLQEQEKLQFQ---LKELKEKIHEQTTLSKRLGEELQTQKKTNTH 735

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             E ++++ +   +  L  ++ E+   ++ +  ++  +L+K       Q +E+E+Q+A+ 
Sbjct: 736 QEETIQRITK---EKSLADSSLESLRKELHELAKKERSLHKTLEEKQLQVQELEEQLAEK 792

Query: 606 TAKG----------------EAEKTAILISILHEVHIQIHQIESQE 635
             +                 +      L S L+++ +++ + E+ E
Sbjct: 793 EKENLALKKADKQSQHEKSLDKSAIESLTSELNQLKLELQKQETLE 838


>gi|320450440|ref|YP_004202536.1| chromosome segregation SMC protein [Thermus scotoductus SA-01]
 gi|320150609|gb|ADW21987.1| chromosome segregation SMC protein [Thermus scotoductus SA-01]
          Length = 1010

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 47/129 (36%), Gaps = 7/129 (5%)

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
           + E   L   L    +E+         +RL      E   + +RQ  +    +   E   
Sbjct: 214 DLEALALKVSLLEARMEEAQAEMARAEERLKALAREEETLERERQALEQRRLALARE--- 270

Query: 572 VDVRQGYQQALALYKRFRL-LSRQKEE---IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            +  +   +A+ L  + R    R+ +E   +++ + +   +            L ++  Q
Sbjct: 271 EESLRQELEAVRLRLKEREGFERELKELARLQRALDRPPPEDPGPPIPPPPRPLEDLRTQ 330

Query: 628 IHQIESQEA 636
           +  ++++EA
Sbjct: 331 LRHLKAEEA 339


>gi|296229150|ref|XP_002760137.1| PREDICTED: lamin-A/C [Callithrix jacchus]
          Length = 664

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|257052836|ref|YP_003130669.1| seryl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
 gi|256691599|gb|ACV11936.1| seryl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
          Length = 451

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 37/87 (42%)

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            + +++   +VR+        + ++  + +  ++   L  R   L   + E+  +I ++ 
Sbjct: 4   RQYVREHPGEVRETLAARGVDDVDLDAILEIDEEWRELKARGDDLRHDRNEVSSKIGELK 63

Query: 607 AKGEAEKTAILISILHEVHIQIHQIES 633
            +G+ E     I    E+  ++ ++E 
Sbjct: 64  QEGDEEAAQEAIERSQELKDELQEVEE 90


>gi|220905650|ref|YP_002480961.1| hypothetical protein Cyan7425_0204 [Cyanothece sp. PCC 7425]
 gi|219862261|gb|ACL42600.1| hypothetical protein Cyan7425_0204 [Cyanothece sp. PCC 7425]
          Length = 438

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 30/161 (18%)

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS--DFVEQKYFLPEEIHQRLCE--R 544
            TLI  P       +++  ++   + LQ L   L               ++   +     
Sbjct: 104 ATLIQPPD-FNPIQEKIVQLQEQYSGLQDLCRQLSEAVYGNAGATLDTAQLQAEIQSTIA 162

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              + L  L+ Q+         +E    D                 L +Q  ++E+Q+AQ
Sbjct: 163 PLQQQLADLESQLA----LVQPSETAPGD--------------TTALQQQLADLEQQVAQ 204

Query: 605 VTAKG-------EAEKTAILISILHEVHIQIHQIESQEAMI 638
           +           +    + L   + ++  QI Q+    A I
Sbjct: 205 LQLSSPSTVAPVDDGTLSTLQIQVQDLSAQIQQLADGLAAI 245


>gi|148678084|gb|EDL10031.1| mCG127945, isoform CRA_c [Mus musculus]
          Length = 1034

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/347 (8%), Positives = 104/347 (29%), Gaps = 42/347 (12%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++ L   +P ++              +   +   +     +         +D DS   
Sbjct: 584 EDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPIKAKKRKRDDNKDIDSEKE 643

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              +   +     ++  ++   K+  +          +  E  L   +   +       Y
Sbjct: 644 AAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPR-------Y 696

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                  L    +K + +     R  ++    +++   ++   +  + + K + + +  E
Sbjct: 697 L-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSE 751

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            A              +++ +  +     + + L++   +   +++    +   +++   
Sbjct: 752 FAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKEDSKTRGEKIKSD 800

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQALALYK---RFRL 590
            F  L                  E++             D+ + Y + +A      + + 
Sbjct: 801 FFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKE 860

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 861 LERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 902


>gi|118151096|ref|NP_001071468.1| centrosomal protein of 120 kDa [Bos taurus]
 gi|117306647|gb|AAI26532.1| Centrosomal protein 120kDa [Bos taurus]
 gi|296485579|gb|DAA27694.1| centrosomal protein of 120 kDa [Bos taurus]
          Length = 936

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 46/404 (11%), Positives = 114/404 (28%), Gaps = 20/404 (4%)

Query: 242 FHKGKNL-YNFFGALNYLQKSIRKDVRRNSSSFIILVEGY--MDVLSL-CQAGVQNVVSS 297
           F     L Y++    +         V    +  + L + Y   D  +L  Q     +   
Sbjct: 471 FPINCILRYSYPFFGSAAPIMTNPPVEVRKNMEVFLPQSYCAFDFATLPHQLQDTFLRIP 530

Query: 298 LGTALTEY--QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           L   L       + L     RI L         R      +         +         
Sbjct: 531 LLVELWHKDKMSKDLLLGIARIQLSNILSSEKTRFLGSNGEQCWRQTFSESVPIVATQGS 590

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
                          +  + +  + + D    +  +    +      E +   +   + +
Sbjct: 591 NNRIVDLSYTVTLEDYGLVKMREIFVSDSS--QLKQKELAHMQALAEEWKKRDRERESLV 648

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR--HRDQKGPSQRLMQSSLVK 473
           K +   Y   +    +     +K   + +      ++  R    +++   Q L  S    
Sbjct: 649 KKKVAEYNILEGKLQKTLIDLEKREQQLAIAESELQRERRELKSERERNLQELQDSIRRA 708

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +        E   +  L      LQ+Q  +  +      + + L         +Q    
Sbjct: 709 KEDCVHQVELERLKMKQLEEDKHRLQQQLNDAEN------KYKTLEKEFHQFKDQQSSKP 762

Query: 534 PEEIHQRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              +   +        EL ++L+   +    +       + ++ +  Q+      +   L
Sbjct: 763 EIRLQSEINLLTLEKVELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARL 820

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +Q+EE+E+   +  A  E +        L ++  +++++  QE
Sbjct: 821 KKQQEELEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 864


>gi|26000250|gb|AAN75570.1| p150 dynactin NUDM [Emericella nidulans]
          Length = 1267

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 65/221 (29%), Gaps = 6/221 (2%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              +R +L+ + +K + +           A     +G    L        +   +   + 
Sbjct: 229 LDELRTKLKVMEKKRVEDREKLKDMEALQADRDKLRGIIHTLQVKYKPHERNLAELEAKL 288

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                 +     ++ E    +     D     ++      +    K  + E   +    R
Sbjct: 289 KEAEARVEELEKLIAEHESLMEIASLDREMAVEMADAHKLECETLKLRVEELELEVEVLR 348

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIA 603
              E   Q       +       E     +R+   +   + ++    L  Q +E+++ + 
Sbjct: 349 EENEEFGQTMSPEEKSSHGWLQMEKTNERLREALIRLRDMTQQQEAELKDQIKELQQDLE 408

Query: 604 QVTA-----KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              A     +   EK     S L EV  ++   E  E ++E
Sbjct: 409 DYAAIRSKYEATKEKLMKSESNLQEVRERLETGEGNEQLVE 449


>gi|15599881|ref|NP_253375.1| hypothetical protein PA4686 [Pseudomonas aeruginosa PAO1]
 gi|9950943|gb|AAG08073.1|AE004882_4 hypothetical protein PA4686 [Pseudomonas aeruginosa PAO1]
          Length = 948

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 84/233 (36%), Gaps = 19/233 (8%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R + S+ + +RL+ L ++              +     ++   Q + +   +        
Sbjct: 369 RQFSSEDLEERLRDLEKRLKNVRQQLEHADNNSYARLREEFSQQDVERLMRLFNGALFSL 428

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            L E  +    ++   +  +  + + D  +     +     +    +E            
Sbjct: 429 PLGENGV---NLDDGDVWVKSVEAILD-HFKGEHFEAPGLSIDLSHIEPPALQALADRAA 484

Query: 541 LCERG--FGELLKQLDRQVRDAGLWSA---TTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           L ++     + LKQL  Q   A   +A     E    DV    Q+AL  ++R + L+ ++
Sbjct: 485 LRDQKERLEKELKQLKTQQSVAADRAASKAQAEKLYQDVLDA-QKALEDFRRTQTLTAEE 543

Query: 596 EEIEKQIAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQEAMIE 639
            E   ++AQ+ A  +          E+   L + L  V  Q+  +E++E  +E
Sbjct: 544 PEKLAELAQLEASQDELKRSSDAFAERVQQLSARLQLVARQLGDLEAKERTLE 596


>gi|6329166|dbj|BAA86392.1| transcription factor CA150b [Mus musculus]
          Length = 1034

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/347 (8%), Positives = 104/347 (29%), Gaps = 42/347 (12%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++ L   +P ++              +   +   +     +         +D DS   
Sbjct: 584 EDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPIKAKKRKRDDNKDIDSEKE 643

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              +   +     ++  ++   K+  +          +  E  L   +   +       Y
Sbjct: 644 AAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPR-------Y 696

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                  L    +K + +     R  ++    +++   ++   +  + + K + + +  E
Sbjct: 697 L-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSE 751

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            A              +++ +  +     + + L++   +   +++    +   +++   
Sbjct: 752 FAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKEDSKTRGEKIKSD 800

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQALALYK---RFRL 590
            F  L                  E++             D+ + Y + +A      + + 
Sbjct: 801 FFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKE 860

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 861 LERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 902


>gi|70998474|ref|XP_753959.1| conserved hypothetical protein [Aspergillus fumigatus Af293]
 gi|66851595|gb|EAL91921.1| conserved hypothetical protein [Aspergillus fumigatus Af293]
 gi|159126308|gb|EDP51424.1| conserved hypothetical protein [Aspergillus fumigatus A1163]
          Length = 717

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 38/335 (11%), Positives = 98/335 (29%), Gaps = 14/335 (4%)

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
            L        L    D  G   +     L+       N       S+  DP        K
Sbjct: 124 NLSGNLSSQWLSSSTDSKGKPRSRLTQALLDSREKSPNDSTTTTNSQRADPYPATNTASK 183

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA- 427
            A +    +   +     + ++        D       +    +   +    ++   +  
Sbjct: 184 EASQSTKEDDETINLDDPRSQSGKYWKAEFDSYRARTTNEIRKLIQYRSAAKKFALMKEA 243

Query: 428 ----IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               +  +L++  +  + E   +      +      K   ++L+Q    +  L+ +   R
Sbjct: 244 EASRLAKKLKE-EEVKVAEMERHVTQLASSMVAEKAKADREQLVQDLTKQTALALQYKHR 302

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRL 541
              L   L  H  +  E    +     +N+        +       +    + E   Q+ 
Sbjct: 303 VNTLRKLLEQHGVVGSEVDDIVGKREANNSSNDTSQELVKTQQALSQANARIEEMKLQQA 362

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEK 600
                 EL +  +++  +    + T + ++  V+Q   +     K     L +++ ++E 
Sbjct: 363 EFDKLKELAQSSEQKASELARENLTLKQSLARVKQEMSKYEGRRKEKEAKLKQREIKLEA 422

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +I +        +         E+   + +  +QE
Sbjct: 423 RIQEYRN-----RLKTASQEHREMEEDLRESFNQE 452


>gi|46117102|ref|XP_384569.1| hypothetical protein FG04393.1 [Gibberella zeae PH-1]
          Length = 565

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 70/214 (32%), Gaps = 21/214 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + I+  L   F++   E        ++     ++   +       + K K   + + RE
Sbjct: 181 VEKIKQTLSDRFKRDKAELEESKERIEELEAENEELRNNAVSSGDDVAKLKEELQDATRE 240

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              L +      +  + + +  +    + +   L S + +       +    + +R  + 
Sbjct: 241 LNTLRS---RNNLSAQNWNKEKEELLRHVQH--LKSEMETTANAMGEWEVIAMEERSVKE 295

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
           G  + + +L+ QV                +RQ Y+ A         L    +   ++I  
Sbjct: 296 GLVDKVSELEEQVTL--------------LRQNYESATTDRDSQATLIENLQNALREIQD 341

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIE--SQEA 636
              K   +      + + ++  Q+ + +  + EA
Sbjct: 342 ARKKELRDMVETTEAQIQDLKKQVQEADARATEA 375


>gi|300871081|ref|YP_003785953.1| phage tail tape measure protein [Brachyspira pilosicoli 95/1000]
 gi|300688781|gb|ADK31452.1| phage tail tape measure protein, TP901 family [Brachyspira
           pilosicoli 95/1000]
          Length = 1157

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/348 (8%), Positives = 103/348 (29%), Gaps = 47/348 (13%)

Query: 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382
            +   +      ++     L    ++   L   G D ++  +   + + + +  +S  + 
Sbjct: 635 NELKKVEDTLAQLEKQRNDLNQNMQLRQSLTRDGIDLETKEQKANQKSIDAIKNKSDTVK 694

Query: 383 DMLWKRE-TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
           +     E          ++      +L      I D        ++ ++++  +  +  T
Sbjct: 695 EHTKTYEDYLKELKKAEEDETRRVKNLNALGAEISDADA----LESKKNKVSSILTEMST 750

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
             +      K  +++      S +  +   +  ++    +  E  +         + +E 
Sbjct: 751 ALNLNANQIKYLSKNYGYAFDSIKTDRFDELVKEIENSITAYERNV--------EVAEEF 802

Query: 502 YQELADIRYDNNELQKLWSFL------FSDFVEQKYFLPEEIHQRLCERGFG-------- 547
            +++++   +  + + + S +           EQ   L ++                   
Sbjct: 803 GEKISEAEREGAKSEIVRSGIESITNEIKLTNEQVEILKQKFGDLWKVNTLDFSSYFASN 862

Query: 548 --ELLKQLDRQVRD------------AGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +   +   + D                   TE       +  ++  A   +   +  
Sbjct: 863 WSNMFNDVADNMSDLYTAVQDLKIQAIEFEIDKTEERKELALKAIEEEQAARLKALGIME 922

Query: 594 --QKEEIEKQIAQVTAKGEAE----KTAILISILHEVHIQIHQIESQE 635
             QK+ +  +I Q+  +        +   + + L E   ++ +I+ +E
Sbjct: 923 NSQKQSLLNEIKQLKNRQNVALGLYEQERIKAELEEKQKELSKIQIEE 970


>gi|298676000|ref|YP_003727750.1| chromosome segregation protein SMC [Methanohalobium evestigatum
           Z-7303]
 gi|298288988|gb|ADI74954.1| chromosome segregation protein SMC [Methanohalobium evestigatum
           Z-7303]
          Length = 1174

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 56/169 (33%), Gaps = 8/169 (4%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY----DNNELQKLWSFLFSDFVE 528
           K       S ++ + L         L +  +++ +          +L  + S +     E
Sbjct: 659 KSGAMSGGSKQQRSGLSFAAAEKEKLTKIAEKITEYDSKRNNTIKKLDDVESQISDVKQE 718

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY--- 585
                 E   +++         ++L + +          E +  ++++   + +A     
Sbjct: 719 INNHENEISKKQMQLEEISSREERLSQFIESKNKELEEIEESRKELKEEMDKVVADKDEK 778

Query: 586 -KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            K+   L  +  E+E+++A        EK   L   +  +  +I   +S
Sbjct: 779 TKKENELDEKISELEEELADSEIPELNEKADNLNEEIQRLEGRIRDTDS 827


>gi|296201286|ref|XP_002747977.1| PREDICTED: myosin-10 [Callithrix jacchus]
          Length = 1776

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 676 EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 735

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 736 ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 795

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
             ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 796 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 849

Query: 538 HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            Q L +             + + +L  Q+ +  L  A  E    +++    +        
Sbjct: 850 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKE---EELQGALARGDDETLHK 906

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
               +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 907 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 954



 Score = 37.6 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1191 EEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQ 1250

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1251 KKFDQLLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1305

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1306 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1365

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1366 EVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEID 1425

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1426 LKDLEAQIEA 1435


>gi|285025947|dbj|BAI67908.1| ClpB protein [Acetobacter pasteurianus]
          Length = 871

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 69/206 (33%), Gaps = 10/206 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R ++           +  +++    K +L     + + AL+       
Sbjct: 320 YRKYIEKDAALARRFQPVFVGEPSVADTISILRGIKEKYELHHGVRITDGALVAAATLSN 379

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S   E        I  ++      E L++ D 
Sbjct: 380 RYITDRFLPDKAIDLIDEAASRLRMQIDSKPEELDELDRRIIQLKIE----REALRKEDD 435

Query: 556 QVRDAGLWSATTEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                 L +   E   ++     +   +          + L  Q ++    +     KG+
Sbjct: 436 TAGKDRLEAVEAELADLEEKSNTLSAAWHAEKNRVNTIQKLQEQLDQARSDVEVAQRKGD 495

Query: 611 AEKTAILI-SILHEVHIQIHQIESQE 635
             + + L+  ++  +  QI + +  E
Sbjct: 496 LGRASELMYGVIPNLQAQIAEAQKTE 521


>gi|256851685|ref|ZP_05557073.1| replicative DNA helicase [Lactobacillus jensenii 27-2-CHN]
 gi|260661598|ref|ZP_05862510.1| replicative DNA helicase [Lactobacillus jensenii 115-3-CHN]
 gi|282934231|ref|ZP_06339508.1| replicative DNA helicase [Lactobacillus jensenii 208-1]
 gi|297205294|ref|ZP_06922690.1| replicative DNA helicase DnaB [Lactobacillus jensenii JV-V16]
 gi|256615643|gb|EEU20832.1| replicative DNA helicase [Lactobacillus jensenii 27-2-CHN]
 gi|260547655|gb|EEX23633.1| replicative DNA helicase [Lactobacillus jensenii 115-3-CHN]
 gi|281301705|gb|EFA93972.1| replicative DNA helicase [Lactobacillus jensenii 208-1]
 gi|297149872|gb|EFH30169.1| replicative DNA helicase DnaB [Lactobacillus jensenii JV-V16]
          Length = 455

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 9/138 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                  S  E A+L  +   P  + +    +    +     + L++ +       +   
Sbjct: 6   SPQIPHDSEAEKAVLGAIFIDPEAIADAEAIVTADDFYERANRILFAAMKDLVDRDEAID 65

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  I   L +    + L+ +      + +  AT  +        Y Q +    R   L R
Sbjct: 66  PLTIRDELAK---RKQLEDIGGIAYISDVAVATPTSA---HVTYYAQIV---HRKSQLRR 116

Query: 594 QKEEIEKQIAQVTAKGEA 611
                +K I       + 
Sbjct: 117 LIAASQKIIQNAMEGSDD 134


>gi|222825106|dbj|BAH22263.1| replicative DNA helicase [Wolbachia endosymbiont of Cadra cautella]
          Length = 480

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 52/178 (29%), Gaps = 16/178 (8%)

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E  L+  +I    I       +A   + +   Q +++ +             
Sbjct: 16  KLPHNLEAEQMLIGAMIRDNRICDAVEDIIAADNFYDPLHQSIFTQISKTRKHGIVANEL 75

Query: 536 EIHQRLCER------GFGELLKQLDRQVRDAGLWSATTEANIV--------DVRQGYQQA 581
            +             G  E L +L  +   A    + T              + Q     
Sbjct: 76  SLKMFFENDKAFAECGGVEYLAKLAAKASIALDIYSLTRIIRDTYLRRCLIKLGQEIVDD 135

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-TAILISILHEVHIQIHQIESQ-EAM 637
              Y        Q E+   ++  +  K + +K    L S + +V  +I ++++  EA+
Sbjct: 136 SYNYDIENPAQLQIEQAMTKLFNLAVKKQGDKTYIKLASSIKDVVEKISKLKNNPEAL 193


>gi|194892245|ref|XP_001977626.1| GG19146 [Drosophila erecta]
 gi|190649275|gb|EDV46553.1| GG19146 [Drosophila erecta]
          Length = 556

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           +   L    +E       E             +K++  ++     +++     +  V   
Sbjct: 418 IEQRLKKTLIENGLIDASEFAAHEDVDEVLMEIKRVTTEISSISQFNSEELKRLRAVASE 477

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAK------GEAEKTAILISILHEVHIQIHQI 631
             + +A+ ++   + ++  E  K++ Q  AK       E ++   L +    +  Q+ ++
Sbjct: 478 EIKRIAIKRKLDTVDQEILECYKRMLQYRAKRKGHTFEEKQEIIRLTNEQRLLADQLERM 537

Query: 632 ESQEAMIEGFGKM 644
           +     I G G  
Sbjct: 538 QMHLPCIGGAGSS 550


>gi|189239929|ref|XP_001813306.1| PREDICTED: similar to Myosin heavy chain CG17927-PF isoform 1
            [Tribolium castaneum]
          Length = 1960

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1573 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1632

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    + +  ++  + E           A+  E 
Sbjct: 1633 NKANAEAQKTIKRYQQQLKDTQTALEEEQRARDEAREQLGISER-------RANALQNEL 1685

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE----IHQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1686 EESRTLLEQADRARRQAEQELGDAHEQLNDLSAQNSSLSAAKRKLETELQTLHSDLDELL 1745

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E QI  +  + +  +   L
Sbjct: 1746 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKDLQVRLDEAEANAL 1805

Query: 618  ---ISILHEVHIQIHQIESQ 634
                 ++ ++  ++ ++E++
Sbjct: 1806 KGGKKLIQKLEQRVRELENE 1825


>gi|124487319|ref|NP_031734.3| citron Rho-interacting kinase [Mus musculus]
          Length = 2055

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 95/298 (31%), Gaps = 38/298 (12%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
             +   +   EKL         +  K        ++ + + +    ++   N +KD    
Sbjct: 663 QAKERAERELEKLHNREDSSEGIKKKLVEAEERRHSLENKVKRLETMERRENRLKDDIQT 722

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+               +         +++ + + K    K+ 
Sbjct: 723 KSEQIQQMADKILELEEKHREAQVSAQHLEVHLKQKEQHYEEKIKVLDNQIKKDLADKE- 781

Query: 481 SLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                +L   +  H     E+ + L++    I   +++++ L   +       K      
Sbjct: 782 -----SLENMMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANSS 836

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALALY 585
           +  +   +   E++ +L +Q       +   EA    + +  +           + L L 
Sbjct: 837 LFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKSRLLELE 896

Query: 586 KRFRL-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            R R            L RQ  E++  + +  +     +   L +    +  Q+ Q +
Sbjct: 897 TRLREVSLEHEEQKLELKRQLTELQLSLQERES-----QLTALQAARAALESQLRQAK 949


>gi|98986299|dbj|BAE94537.1| hypothetical protein [Colletotrichum lagenarium]
          Length = 1578

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 73/232 (31%), Gaps = 35/232 (15%)

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
            QQL    +T      +             P  R + S  V      +    E  L   + 
Sbjct: 1202 QQLETNAMTVQHNTLKDILVERGISPTNMPRTRSIGSPRVNTPEQARIRDLEDQLAAAIA 1261

Query: 493  NHPAILQE-----------QYQELADIR-----------YDNNELQKLWSFLFSDFVEQK 530
            NH    Q              ++L  +                 L++L   L     E  
Sbjct: 1262 NHEDNAQRSAAQQDATEAAYREKLTQLENDYQSAVHYVKGTEKMLKQLKEQLARYKSENT 1321

Query: 531  YF--LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                  EE+ +R+ + G   +    D    +  +     ++   D++   +    L  + 
Sbjct: 1322 RLKSEIEELEERVDKSG-SNISTAPDNWESERHILQEKIDSLEEDLQASTEH---LENQL 1377

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ-IHQIESQEAMIE 639
              + ++ E+  K++ +   K   E +  L      V+ + + +++ + A++E
Sbjct: 1378 IAVRKELED-SKKVREGALKDAEEASRKL-----AVNRRDLEELQQENALLE 1423


>gi|157866641|ref|XP_001687712.1| kinesin K39 [Leishmania major strain Friedlin]
 gi|68125326|emb|CAJ03172.1| putative kinesin K39 [Leishmania major strain Friedlin]
          Length = 2976

 Score = 42.6 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            ++RLQ   ++  +E        +      ++    +  +Q  L +     + +  +   L
Sbjct: 1597 KERLQGELEEKGSEAEAAKADNETLRGELEEAHAEKERLQGELEEKGSEAEAAKADNETL 1656

Query: 489  LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539
               +         +  E  ++ ++      + + L   L     E    Q     +    
Sbjct: 1657 RGELEEAHAEKERLQSELEEKGSEAEAAQADNETLRGELEEAHAEKERLQSELEEKGSEA 1716

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +     L  +L+    +     +  E    +         AL         +KE ++
Sbjct: 1717 EAAQADNEALRGELEEAHAEKERLQSELEEKGSEAEAAQADNEALRGELEEAHAEKERLQ 1776

Query: 600  KQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQ 634
             ++ +  ++ EA +     L   L E H +  +++S+
Sbjct: 1777 SELEEKGSEAEAAQADNETLRGELREAHAEKERLQSE 1813


>gi|325180528|emb|CCA14934.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5126

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4185 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4244

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4245 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4304

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4305 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4357

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4358 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4415

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4416 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4475

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4476 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4515


>gi|308235406|ref|ZP_07666143.1| hypothetical protein GvagA14_04145 [Gardnerella vaginalis ATCC
           14018]
          Length = 664

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 63/212 (29%), Gaps = 16/212 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           ++    ++ +  +K     +      KK          +++ ++      K ++      
Sbjct: 142 AEDTARKINEAVEKKNNAENSIAETNKKIETETQNIANAEQRIEEKSKAVKEAE------ 195

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                       +  E  Q    +    +E +     L  D  +      E++     E 
Sbjct: 196 --------KDKKVTDEAKQNADQVNKIRSEEKAAKDELAEDAKDDNEETAEDLAN--EEE 245

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              +L  +L    + +       E    + +Q    A  +  +   +++Q +  E+ +  
Sbjct: 246 AKSKLEAELAEAKQKSESTKVEAEKLEKEAQQKEAAAEGVDNKIENITKQIKTAEENLKT 305

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           + A  +  K   L   +     Q  + E   A
Sbjct: 306 LDADNDQNKINQLKEKVASTKKQAEEAEKTAA 337


>gi|294790676|ref|ZP_06755834.1| peptide chain release factor 2 [Scardovia inopinata F0304]
 gi|294458573|gb|EFG26926.1| peptide chain release factor 2 [Scardovia inopinata F0304]
          Length = 370

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E I   L  +   E +  L+++    GLW     A +  V     Q     KR   L R+
Sbjct: 18  ETISSALGRQNLAEKIVSLEKEASAPGLWDDQENAQL--VTSRLSQTQNEAKRLDDLERR 75

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            ++I       + + + +  A     L  V   +  +E Q  +++G
Sbjct: 76  LDDIATLYELGSEEDDQDSKAEAEKELTAVRSDLSDLEIQT-LLDG 120


>gi|189239937|ref|XP_001814083.1| PREDICTED: similar to Myosin heavy chain CG17927-PF isoform 6
            [Tribolium castaneum]
          Length = 1960

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1573 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1632

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    + +  ++  + E           A+  E 
Sbjct: 1633 NKANAEAQKTIKRYQQQLKDTQTALEEEQRARDEAREQLGISER-------RANALQNEL 1685

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE----IHQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1686 EESRTLLEQADRARRQAEQELGDAHEQLNDLSAQNSSLSAAKRKLETELQTLHSDLDELL 1745

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E QI  +  + +  +   L
Sbjct: 1746 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKDLQVRLDEAEANAL 1805

Query: 618  ---ISILHEVHIQIHQIESQ 634
                 ++ ++  ++ ++E++
Sbjct: 1806 KGGKKLIQKLEQRVRELENE 1825


>gi|107099640|ref|ZP_01363558.1| hypothetical protein PaerPA_01000656 [Pseudomonas aeruginosa PACS2]
 gi|218893783|ref|YP_002442652.1| hypothetical protein PLES_50721 [Pseudomonas aeruginosa LESB58]
 gi|254244412|ref|ZP_04937734.1| hypothetical protein PA2G_05268 [Pseudomonas aeruginosa 2192]
 gi|126197790|gb|EAZ61853.1| hypothetical protein PA2G_05268 [Pseudomonas aeruginosa 2192]
 gi|218774011|emb|CAW29826.1| hypothetical protein PLES_50721 [Pseudomonas aeruginosa LESB58]
          Length = 948

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 84/233 (36%), Gaps = 19/233 (8%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R + S+ + +RL+ L ++              +     ++   Q + +   +        
Sbjct: 369 RQFSSEDLEERLRDLEKRLKNVRQQLEHADNNSYARLREEFSQQDVERLMRLFNGALFSL 428

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            L E  +    ++   +  +  + + D  +     +     +    +E            
Sbjct: 429 PLGENGV---NLDDGDVWVKSVEAILD-HFKGEHFEAPGLSIDLSHIEPPALQALADRAA 484

Query: 541 LCERG--FGELLKQLDRQVRDAGLWSA---TTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           L ++     + LKQL  Q   A   +A     E    DV    Q+AL  ++R + L+ ++
Sbjct: 485 LRDQKERLEKELKQLKTQQSVAADRAASKAQAEKLYQDVLDA-QKALEDFRRTQTLTAEE 543

Query: 596 EEIEKQIAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQEAMIE 639
            E   ++AQ+ A  +          E+   L + L  V  Q+  +E++E  +E
Sbjct: 544 PEKLAELAQLEASQDELKRSSDAFAERVQQLSARLQLVARQLGDLEAKERTLE 596


>gi|325180549|emb|CCA14955.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5069

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4175 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4234

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4235 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4294

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4295 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4347

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4348 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4405

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4406 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4465

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4466 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4505


>gi|325180548|emb|CCA14954.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5042

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4175 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4234

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4235 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4294

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4295 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4347

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4348 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4405

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4406 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4465

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4466 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4505


>gi|325180546|emb|CCA14952.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5054

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4175 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4234

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4235 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4294

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4295 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4347

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4348 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4405

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4406 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4465

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4466 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4505


>gi|325180541|emb|CCA14947.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5089

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4175 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4234

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4235 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4294

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4295 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4347

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4348 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4405

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4406 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4465

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4466 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4505


>gi|325180540|emb|CCA14946.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5057

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4186 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4245

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4246 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4305

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4306 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4358

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4359 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4416

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4417 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4476

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4477 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4516


>gi|325180538|emb|CCA14944.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5065

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4186 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4245

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4246 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4305

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4306 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4358

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4359 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4416

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4417 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4476

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4477 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4516


>gi|325180537|emb|CCA14943.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5034

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4175 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4234

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4235 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4294

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4295 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4347

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4348 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4405

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4406 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4465

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4466 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4505


>gi|325180530|emb|CCA14936.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5063

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4157 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4216

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4217 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4276

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4277 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4329

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4330 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4387

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4388 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4447

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4448 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4487


>gi|325180527|emb|CCA14933.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5055

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4157 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4216

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4217 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4276

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4277 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4329

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4330 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4387

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4388 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4447

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4448 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4487


>gi|321400116|ref|NP_001189475.1| protein CASP isoform g [Homo sapiens]
          Length = 639

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 98/282 (34%), Gaps = 16/282 (5%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 64  DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 123

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 124 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 183

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 184 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 243

Query: 554 DRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQI 602
            ++               +  A  E  I  + +  Q+  A   + R  S  Q  ++E+Q+
Sbjct: 244 IQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQL 303

Query: 603 AQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           +   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 304 SAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 345


>gi|312080729|ref|XP_003142725.1| hypothetical protein LOAG_07143 [Loa loa]
 gi|307762111|gb|EFO21345.1| hypothetical protein LOAG_07143 [Loa loa]
          Length = 2021

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 91/261 (34%), Gaps = 12/261 (4%)

Query: 386  WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
             +++ E  +    D   + + + +   +   D +      + + + L+++ +K  T  + 
Sbjct: 1679 MEQQLELANRLKDDYSRQFKKYQQIIKDMQHDNEEVKQSKEELANSLREMERKLRTLDAE 1738

Query: 446  YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
              R  + N     QK   +                ++ E   L   +       E+ Q L
Sbjct: 1739 NARLVEANESLMSQKRQLEAEKDELEDARNRGGGMNVDERRRLEARVAALEEEVEEEQSL 1798

Query: 506  ADIRYDNNE-----LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV-RD 559
             ++  D        +++L + L  +    +    E+       R     + +L+      
Sbjct: 1799 TELALDKQRKAQMQVEQLTTELSVERSTTQKLETEKQAMERVNRELKNKVSELETSAQTR 1858

Query: 560  AGLWSATTEANIVDVRQGY----QQALALYKRFRLLSRQKEEIEKQIA--QVTAKGEAEK 613
            +    A  EA I  + + Y    Q+     +++R + ++  +   Q+   +   +   E+
Sbjct: 1859 SRAQIAALEAKIQYLEEQYNAESQERANATRQYRRIEKRLADAILQLEDERRNTEQNKEQ 1918

Query: 614  TAILISILHEVHIQIHQIESQ 634
                 + + ++  ++ ++E +
Sbjct: 1919 AEREKTRVRQIRRRLDEMEEE 1939



 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 64/199 (32%), Gaps = 2/199 (1%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-- 484
             I  +     +          R  ++     + +  + R     L K +      L E  
Sbjct: 1452 EITQKTLAEMEVARERFERSKRKLQQEVEDANIELNNVRTYSRDLEKKQRRFDQQLAEER 1511

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            A L   +    A+ QE       I   NN+L+ L S L      ++    E       + 
Sbjct: 1512 ANLQKVVNERDALAQESRDRETRILSLNNDLEGLRSQLEESERVKRMLQMELDESVSSKD 1571

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              G+ + +L++  R          A I ++    Q A     R  +  +  +  ++++  
Sbjct: 1572 DVGKNVHELEKAKRQLEAELQEQRAQIEELEDAVQIAEDARLRLDVNLQALKSEQERMLA 1631

Query: 605  VTAKGEAEKTAILISILHE 623
               +   EK   L+  + E
Sbjct: 1632 AKEQESEEKRRSLLKQIRE 1650



 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 85/281 (30%), Gaps = 14/281 (4%)

Query: 365  CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                   ++ + + +   ++               +R   +   +   N  K    R   
Sbjct: 1465 RERFERSKRKLQQEVEDANIELNNVRTYSRDLEKKQRRFDQQLAEERANLQKVVNERDAL 1524

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +Q  RDR  ++            +  +     R  +      + S    GK   +    +
Sbjct: 1525 AQESRDRETRILSLNNDLEGLRSQLEESERVKRMLQMELDESVSSKDDVGKNVHELEKAK 1584

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              L   L    A ++E    +        + +            ++  +     ++  E 
Sbjct: 1585 RQLEAELQEQRAQIEELEDAVQ----IAEDARLRLDVNLQALKSEQERMLAA-KEQESEE 1639

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA- 603
                LLKQ+     +      +    I + ++   Q + + ++  L +R K++  +Q   
Sbjct: 1640 KRRSLLKQIRELENELENERRSRTGAISNRKKIESQLIEMEQQLELANRLKDDYSRQFKK 1699

Query: 604  --------QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                    Q   +   +    L + L E+  ++  ++++ A
Sbjct: 1700 YQQIIKDMQHDNEEVKQSKEELANSLREMERKLRTLDAENA 1740


>gi|301617088|ref|XP_002937984.1| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase,
           H3 lysine-79 specific-like [Xenopus (Silurana)
           tropicalis]
          Length = 1480

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 64/191 (33%), Gaps = 14/191 (7%)

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL-LLTLINHPAILQEQYQELADIRYDNN 513
             + Q+ PS +L+ S           S R   L L++ +  P       Q L   +  N+
Sbjct: 467 PPKVQRQPSNQLLSSPTPPALQKLLDSFRIQYLQLMSYMKTPHYKAGLQQLLEQEKEKNS 526

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            L      L +    QK  + +   Q+L E G   L      Q +               
Sbjct: 527 HLLGAAQQLLTHCQAQKEEIKKLFQQKLDELGVKALTYSDLIQAQKEIFAHNQQLKEQSR 586

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ--- 630
             +    AL  +   +LL  + EE++     ++          L+     +  QI +   
Sbjct: 587 QLEEENGALRNHS-LQLLKARCEELKLDWNTLS-------LENLMKEKLALKNQISEKQK 638

Query: 631 --IESQEAMIE 639
             +E Q +++E
Sbjct: 639 HCLELQISIVE 649


>gi|260584308|ref|ZP_05852055.1| replicative DNA helicase [Granulicatella elegans ATCC 700633]
 gi|260157826|gb|EEW92895.1| replicative DNA helicase [Granulicatella elegans ATCC 700633]
          Length = 461

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 56/166 (33%), Gaps = 15/166 (9%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
               +G++  +    E ++L  ++  P  +    + L    +     Q ++  +     +
Sbjct: 2   DEQFEGRIPPQNLDAEQSVLGAILLDPDSIVSVMEFLMPEDFYRVNHQVIFKAMVELNND 61

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                   + +RL +       KQL+       L     +       + Y + ++     
Sbjct: 62  SSPIDIVSVAERLNQN------KQLENAGGQFYLLELAEKVPTASNVEYYSKIVSEKSTL 115

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISI----LHEVHIQIHQ 630
           R L R   +I        A GE ++ A ++      + EV  + ++
Sbjct: 116 RKLIRTSTDI-----ATDAYGETDEVAAVLDRAERSILEVSEKRNR 156


>gi|189239933|ref|XP_001813779.1| PREDICTED: similar to Myosin heavy chain CG17927-PF isoform 4
            [Tribolium castaneum]
          Length = 1960

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1573 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1632

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    + +  ++  + E           A+  E 
Sbjct: 1633 NKANAEAQKTIKRYQQQLKDTQTALEEEQRARDEAREQLGISER-------RANALQNEL 1685

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE----IHQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1686 EESRTLLEQADRARRQAEQELGDAHEQLNDLSAQNSSLSAAKRKLETELQTLHSDLDELL 1745

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E QI  +  + +  +   L
Sbjct: 1746 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKDLQVRLDEAEANAL 1805

Query: 618  ---ISILHEVHIQIHQIESQ 634
                 ++ ++  ++ ++E++
Sbjct: 1806 KGGKKLIQKLEQRVRELENE 1825


>gi|189239927|ref|XP_001814139.1| PREDICTED: similar to Myosin heavy chain CG17927-PF isoform 7
            [Tribolium castaneum]
          Length = 1960

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1573 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1632

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    + +  ++  + E           A+  E 
Sbjct: 1633 NKANAEAQKTIKRYQQQLKDTQTALEEEQRARDEAREQLGISER-------RANALQNEL 1685

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE----IHQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1686 EESRTLLEQADRARRQAEQELGDAHEQLNDLSAQNSSLSAAKRKLETELQTLHSDLDELL 1745

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E QI  +  + +  +   L
Sbjct: 1746 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKDLQVRLDEAEANAL 1805

Query: 618  ---ISILHEVHIQIHQIESQ 634
                 ++ ++  ++ ++E++
Sbjct: 1806 KGGKKLIQKLEQRVRELENE 1825


>gi|160940688|ref|ZP_02088031.1| hypothetical protein CLOBOL_05582 [Clostridium bolteae ATCC
          BAA-613]
 gi|158436423|gb|EDP14190.1| hypothetical protein CLOBOL_05582 [Clostridium bolteae ATCC
          BAA-613]
          Length = 67

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 13/52 (25%)

Query: 13 IHIPISNLIGQYVDWDRR--------KTNAVKGDYWACCPFHDEKTPSFHCN 56
              +   + Q V   +           N       ACCPFHD++ PS   +
Sbjct: 7  EETNVFEAVEQSVTTRQAALVYGISVGRNG-----MACCPFHDDRHPSMKVD 53


>gi|149412744|ref|XP_001510334.1| PREDICTED: similar to TATA element modulatory factor 1
           [Ornithorhynchus anatinus]
          Length = 1106

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 63/175 (36%), Gaps = 7/175 (4%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +   Q      KL+     +E  L     N   + ++     A +   ++  ++L  
Sbjct: 620 GKEEVEKQHRENIKKLNSVVEQQEKDLGRLQANMDELEEKNRSVQAAL---DSAYKELAD 676

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
              ++  +        I + +  +   EL   L++   +A     T    + D+R   Q+
Sbjct: 677 LHKANATKDSEAQEAAISREMKAK--EELYVALEKAQEEARQQQETLAIQVGDLRLALQR 734

Query: 581 -ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              A  ++   L  +  E+++++ +   +   E    + S    +  QI  +++ 
Sbjct: 735 TEQAAARKEDYLRHEISELQQRLQEAENR-NQELGQSVTSATRPLLRQIENLQAT 788


>gi|119574314|gb|EAW53929.1| myosin, heavy polypeptide 11, smooth muscle, isoform CRA_e [Homo
           sapiens]
          Length = 1652

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 94/265 (35%), Gaps = 10/265 (3%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           +     +     E E        ++ ELE  L      +++++ R    QA R ++ Q  
Sbjct: 607 QEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQM 666

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                +        +K    +       + ++  ++          +E  LL   I+   
Sbjct: 667 LDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKLSKERKLLEERISDLT 726

Query: 497 I-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEIHQRLCER--GFGELLK 551
             L E+ ++  ++    N+ + + S L       E+     E++ ++L      F E + 
Sbjct: 727 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIA 786

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            L  Q+ +  +  A  E  +          +A   +     ++  E+E  I+ +    ++
Sbjct: 787 DLQAQIAELKMQLAKKEEELQAALARLDDEIA---QKNNALKKIRELEGHISDLQEDLDS 843

Query: 612 EKTAILISILH--EVHIQIHQIESQ 634
           E+ A   +     ++  ++  ++++
Sbjct: 844 ERAARNKAEKQKRDLGEELEALKTE 868


>gi|119478417|ref|XP_001259365.1| kinesin family protein [Neosartorya fischeri NRRL 181]
 gi|119407519|gb|EAW17468.1| kinesin family protein [Neosartorya fischeri NRRL 181]
          Length = 1748

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 75/251 (29%), Gaps = 11/251 (4%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
                       +    I  K  I HI D+  ++   + ++  +  L Q+         R
Sbjct: 423 HLSETLNTVQYAQRARAIQSKPQIQHIADESDKHAVIERLKAEVAFLRQQIRIAEDNDRR 482

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
                 R   Q    + L    L   +     S R A L+  L            +    
Sbjct: 483 AAGPQERAERQNEREKELQNQLLDVQESYNALSQRHAKLISELARDSEHSPNGEADDVAS 542

Query: 509 RYDNNELQKL-WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
               + +++L  S  F+  VEQ     E+  Q L           L   V ++ L    T
Sbjct: 543 AVGKSSVERLKRSHSFAQSVEQVVLEYEKTIQSLESS-LSNTRSSLA--VTESTLLERET 599

Query: 568 EANIVDVRQGYQQAL--ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           +   V+      QA    L  R         E+E ++         EK   +I+ L    
Sbjct: 600 KCAYVETVNAQLQARIQKLIDREASTESYMHELESRL--DGQSSGEEKYTAIIAELR--- 654

Query: 626 IQIHQIESQEA 636
            ++ +    EA
Sbjct: 655 KELSRARESEA 665


>gi|157167955|ref|XP_001662921.1| protease m1 zinc metalloprotease [Aedes aegypti]
 gi|108881538|gb|EAT45763.1| protease m1 zinc metalloprotease [Aedes aegypti]
          Length = 863

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 54/534 (10%), Positives = 133/534 (24%), Gaps = 57/534 (10%)

Query: 120 LIEVATDFF----------HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169
             EVA  FF          H  LK      + + L        A  +       D   +L
Sbjct: 323 AHEVAHQFFGNLVGLTWWEHLWLKEGFATFMSFKLTRE-FLPEAWILINHQNFIDRWDAL 381

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
                   +     +E+   I    +A         +I  + ++ G+ +   G       
Sbjct: 382 HFDAGPMTYPMSNYVESPEAIGVHYTAEIVYNKAACVIRMMEAALGEEVFKAGVQDYIAN 441

Query: 230 SVKYLNSPETILFHKGKNLYNF------------FGALNYLQKSIRKDVRRNSSSFIILV 277
                  P  +     +   +               A       +  ++   S+ + +  
Sbjct: 442 DRFGTADPYKLYLSLHRFAEHMLPSEAHVAEIFHSWATQAGHPVVHVEMIGESNYYRLTQ 501

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
             Y D  +   +     +      L E         +  I +  DGD P +         
Sbjct: 502 RKYCDTWNCNGSRWWIPIFYSSYELGERFAGWFSDATDVITVVMDGDLPLVNNGGYGFYR 561

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397
           V         +  +      D  S  +             +         +     S   
Sbjct: 562 VSYCQRGWEAI--IKNWNRLDGISRAKLIDDAFALFWNHGNTFGPLKAMLQLLRTESDPL 619

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ-QLFQKYITEHSGYGRYWKKNARH 456
           P   A  +  L   ++ +K +       Q +   L   + + +  +        ++ A  
Sbjct: 620 PWLAAMGDRTLGKLLHMVKGRSELEPIVQQLARNLTLDMLKLFRNDTRIESSRVRQRALV 679

Query: 457 RDQKGPSQRLMQS---------SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            +++     +            + +            A  L+ ++ +  + +   +    
Sbjct: 680 WEERLKLTNVRAGRTNIRFELCAQIMSPDFMVKLRCNAKFLIKMLQNADLEKCFSESEDF 739

Query: 508 IRYDNNELQ-----KLWSFLFSDFVEQKYFLPE----------EIHQRLCERGFGELLKQ 552
             + +N L+     ++ + + ++         +           +   +        LK+
Sbjct: 740 DEFLDNLLKNFECPEVLNVVLAELEMNNPASDQFVESLFDKLYNLQTSIDTDQLDGFLKE 799

Query: 553 LDRQVRDAGLWSA------TTEANIVDVRQGYQQALALYK-RFRLLSRQKEEIE 599
           +   +                +    D R      L L + R   + ++  EI 
Sbjct: 800 VIHYIYKPHHQQLYRQFIDRLKVISEDQRSTLHHLLDLQQSRVDDILKELAEIR 853


>gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aeropyrum pernix K1]
 gi|5105396|dbj|BAA80709.1| hypothetical protein [Aeropyrum pernix K1]
          Length = 791

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 54/142 (38%), Gaps = 20/142 (14%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
           L         E    +  ++ + L   +   E ++ +  + R+AG+ +   +A I +V  
Sbjct: 579 LAEKAIEAAQEAVSEVLNQVEELLDRVKDLQEEIEDIAEKAREAGVLTEEIQAAIDEVLG 638

Query: 577 GYQQALALYKRFRLLSRQ--KEEIEKQIAQVTAKGEA-----------------EKTAIL 617
              QA +L +    L+++   +   +++ +     E                  +    L
Sbjct: 639 KLDQARSLLEEADSLAKEGDIDGARQKLGEARDVIEEAVSMVRDIRSMVEQAIGDLIDEL 698

Query: 618 ISILHEVHIQIHQIESQEAMIE 639
             ++ E+  +  ++ ++ AM+E
Sbjct: 699 RRLIEELREKAAELNTEAAMLE 720



 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 80/216 (37%), Gaps = 10/216 (4%)

Query: 427 AIRDRLQ--QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +  +L   +  ++ +          +            + ++ +        +   L E
Sbjct: 522 QLAAQLSGSEAVEEALNRLEEAKEKLEAAKEAYSNGRYGEAIVLAEEAASIAEEAKELAE 581

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD--FVEQKYFLPEEIHQRLC 542
            A+         +L +  + L  ++    E++ +           E+     +E+  +L 
Sbjct: 582 KAIEAAQEAVSEVLNQVEELLDRVKDLQEEIEDIAEKAREAGVLTEEIQAAIDEVLGKLD 641

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LLSRQKEEIEKQ 601
           +     LL++ D   ++  +  A  +  + + R   ++A+++ +  R ++ +   ++  +
Sbjct: 642 QA--RSLLEEADSLAKEGDIDGARQK--LGEARDVIEEAVSMVRDIRSMVEQAIGDLIDE 697

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           + ++  +   EK A L +    +  +  ++  +EA+
Sbjct: 698 LRRLIEEL-REKAAELNTEAAMLEAKARRMGDREAL 732


>gi|1709655|sp|P30427|PLEC_RAT RecName: Full=Plectin; Short=PCN; Short=PLTN; AltName: Full=Plectin-1
 gi|1561642|emb|CAA42169.1| plectin [Rattus norvegicus]
          Length = 4687

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 81/237 (34%), Gaps = 36/237 (15%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             L   Y + I + L+++ ++            ++ A         ++L + +  + K   
Sbjct: 1468 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAE-AHAQAKAQA 1526

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +   RE            + +   +E+        + Q+    +  +    +     EI 
Sbjct: 1527 ELEARE------------LQRRMQEEVTRREEAAVDAQQQKRSIQEELQHLRQSSEAEIQ 1574

Query: 539  QRLCERGFGELLK-QLDRQVRDAGLWS------------------ATTEANIVDVRQGYQ 579
             +  +    E  + +++ ++R   L                    A  E      RQ  +
Sbjct: 1575 AKAQQVEAAERSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQE 1634

Query: 580  QALALYKRFRLLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +A  L ++ +  S++K + E ++A   +  A+   EK    +  L E+ +Q  + E 
Sbjct: 1635 EAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREK-QRALQALDELKLQAEEAER 1690



 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2386 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2445

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2446 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQADKEQMAQQLVEETQGFQ 2505

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2506 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2565

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D     Q A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2566 EKVTLVQTLEIQRQQSD-----QDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2620

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2621 QEQILQETQALQKSFLSEKDSLLQRERFIE 2650



 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2346 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2405

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2406 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2465

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2466 KAEAELLQQQKELAQEQA 2483



 Score = 37.9 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++       TE          Q+ +
Sbjct: 1797 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLTEGTAQQRLAAEQELI 1856

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L         Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1857 RLRAETEQGEHQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1915


>gi|94985990|ref|YP_605354.1| excinuclease ABC subunit B [Deinococcus geothermalis DSM 11300]
 gi|94556271|gb|ABF46185.1| excinuclease ABC, B subunit [Deinococcus geothermalis DSM 11300]
          Length = 676

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 82/266 (30%), Gaps = 34/266 (12%)

Query: 409 KNCINHIKDQKLR-------YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
           +   +++ DQ +R           + I+ ++  L  +     +   R        R  + 
Sbjct: 397 RQVSDNVADQIIRPTGLVDPSVTVRPIQGQVDDLLGRIRERAARGERTLVTTLTKRMAED 456

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL--TLINHPAILQEQYQELADIRYDNNELQKLW 519
            ++ L++  +    +       E  +++    + H  +L         +      L  + 
Sbjct: 457 LTEYLLEKGVRARYMHSDIDSVERQVIIRDLRLGHYDVLIGINLLREGLDLPEVSLVAIL 516

Query: 520 SF------------LFSDFVEQKYFLPEE-IHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
                         + +     +    E  ++           L +  R+      ++A 
Sbjct: 517 DADKPGFLRSERALIQTIGRAARNVNGEVVLYADTVTPAMQAALDETQRRREKQLAYNAE 576

Query: 567 TEANIVDVRQGYQQALA------------LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                  VR+G +  +             L      L+ Q  E+E ++ Q +   + E+ 
Sbjct: 577 HGITPQTVRKGVRDVIRGEEVAEVDVSTDLGDDRDALTAQLTELELEMWQASEDLDFERA 636

Query: 615 AILISILHEVHIQIHQIESQEAMIEG 640
           A L   +  +  ++   E ++A + G
Sbjct: 637 AALRDQIRAIEARLQGKEFKQATVPG 662


>gi|332283722|ref|YP_004415633.1| replicative DNA helicase [Pusillimonas sp. T7-7]
 gi|330427675|gb|AEC19009.1| replicative DNA helicase [Pusillimonas sp. T7-7]
          Length = 460

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/155 (9%), Positives = 45/155 (29%), Gaps = 12/155 (7%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
            ++      L   ++       E ++L  L+   A        L +  +   + + +W  
Sbjct: 3   ATKTHSDPQLDYLRVPPHSVEAEQSVLGGLLLDNAAFDRVTDVLNEDDFYRFDHKIIWQH 62

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +       +      +H+ L   G       +        L   T  A  +       + 
Sbjct: 63  ITRLIGLARPADVVTVHESLASAGKS---DDVGGLAYLNALAHNTPSAANIRRYAEIVRE 119

Query: 582 LALYKRFRLLSRQK---------EEIEKQIAQVTA 607
            ++ ++   ++ +          +E  + + +  +
Sbjct: 120 RSMLRKLVSVADEIAAGAFNPQGKEARQLLDEAES 154


>gi|325180544|emb|CCA14950.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5057

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4175 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4234

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4235 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4294

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4295 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4347

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4348 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4405

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4406 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4465

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4466 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4505


>gi|325180531|emb|CCA14937.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5127

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4186 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4245

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4246 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4305

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4306 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4358

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4359 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4416

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4417 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4476

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4477 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4516


>gi|319790046|ref|YP_004151679.1| ATPase AAA-2 domain protein [Thermovibrio ammonificans HB-1]
 gi|317114548|gb|ADU97038.1| ATPase AAA-2 domain protein [Thermovibrio ammonificans HB-1]
          Length = 847

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 73/224 (32%), Gaps = 6/224 (2%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE--H 443
               T +      ++   LE           D +      + +R +L++  +  IT+   
Sbjct: 326 IGATTTDEFRKYIEKDPALERRFAPVWVDEPDIETAILMLKGLRPKLEEHHKVKITDEAI 385

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
               +  KK  + R     +  ++  +  + KL    S  E A L   +++  +  E  +
Sbjct: 386 EAAVKLSKKYIQGRYLPDKAIDVLDEACARKKLEATYSSPELAELKEKLHN--LRAELDE 443

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
            +    +  ++  KL   +       K    +    +        +  +   +V      
Sbjct: 444 AVKAEEF--DKAAKLKKEIKEIEARIKELEEKVEKAKEKGEELPVVTAEDVAEVISEMTG 501

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
              ++    ++++  +    L+KR     R  + I + I +  A
Sbjct: 502 IPASKLQEEEIKKLLRMEEELHKRVIGQERAIKAISEAIRRARA 545


>gi|302843240|ref|XP_002953162.1| hypothetical protein VOLCADRAFT_118298 [Volvox carteri f.
            nagariensis]
 gi|300261549|gb|EFJ45761.1| hypothetical protein VOLCADRAFT_118298 [Volvox carteri f.
            nagariensis]
          Length = 6318

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 62/155 (40%), Gaps = 17/155 (10%)

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              ++LA++R     L++L +       +      +E+   L E+   EL +++  ++ + 
Sbjct: 971  YEEQLAELRLVVRRLEELRTA-ERKLADADLIALQEMMAELREKQLSELREKVAEKLAEH 1029

Query: 561  GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-------EIEKQIAQVTAKGEAEK 613
             +  A  E +  +V      A  L  +     ++ +       +++ Q+ Q+ +  E E+
Sbjct: 1030 KVACAALETSQEEVSSERAAAEQLRHKLGACEKELQLRASLISDLQGQLQQLQSDKELEE 1089

Query: 614  --TAILI-------SILHEVHIQIHQIESQEAMIE 639
                 L+         +  +  ++ +  S+ A+ E
Sbjct: 1090 QSLQSLLSTKTWMTEEIRSLQAELKETSSKLAVAE 1124



 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 68/231 (29%), Gaps = 12/231 (5%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              L+  Y  A   R   + ++ + +     R  ++      +         + +      
Sbjct: 2496 AALQQQYEDAEAGR--AMAEQQLAQALNEIRELQRRVSAAKEMPVLMHQEMAEIKASHDE 2553

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK------LWSFLFSDFVEQKY 531
            ++    E   +          ++    L  +   N+  ++          +    + +  
Sbjct: 2554 QQFEEAETRRMAVQAELDEADRDYPAGLVALEVANSAQRQHDKDSPAGRVMVEQLLAEAV 2613

Query: 532  FLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                E+ +R+   E      + +++             E   + +     +A        
Sbjct: 2614 NEIAELKRRVAVGEAPAQHQIAEVETSRAKFQKQFEEAEMGRMSLLAELDEARRDLSAAV 2673

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAIL--ISILHEVHIQIHQIESQEAMI 638
                 KE +++Q     A     +  +L   + + E+  ++   + +EA++
Sbjct: 2674 AGREAKEALQRQYDDAVASRALAEQQLLDARAEIEELERRVTAADEKEALV 2724



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 95/302 (31%), Gaps = 30/302 (9%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
                  ++ +  +  +  ++ +   E ++ +   +  E E         + D+  R Y +
Sbjct: 2521 NEIRELQRRVSAAKEMPVLMHQEMAEIKASHDEQQFEEAETRRMAVQAEL-DEADRDYPA 2579

Query: 426  QAIRDRLQQLFQKYITEHSGYGR--------------YWKKNARHRDQKGPSQRLMQSSL 471
              +   +    Q+   + S  GR                 K      +     ++ +   
Sbjct: 2580 GLVALEVANSAQRQHDKDSPAGRVMVEQLLAEAVNEIAELKRRVAVGEAPAQHQIAEVET 2639

Query: 472  VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS--DFVEQ 529
             + K  K+    E   +  L       ++    +A        LQ+ +    +     EQ
Sbjct: 2640 SRAKFQKQFEEAEMGRMSLLAELDEARRDLSAAVAGRE-AKEALQRQYDDAVASRALAEQ 2698

Query: 530  KYFL----PEEIHQRLCERGFGELL-----KQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +        EE+ +R+      E L     + ++    +        EA+   ++    +
Sbjct: 2699 QLLDARAEIEELERRVTAADEKEALVLRRVQDVETSRAELQQQLRGAEASRSALQAELDE 2758

Query: 581  ALALYKRFRL-LSRQKEEIEKQIAQVTAKGEAEKTA--ILISILHEVHIQIHQIESQEAM 637
            A   +      L   KE +++Q     A     +       + + E+  ++   E +EA+
Sbjct: 2759 AWRAHSTALAGLEGAKEALKRQFHDAVASRGTAEQQLAEARAKIDELESRVSAAEEKEAL 2818

Query: 638  IE 639
            ++
Sbjct: 2819 MQ 2820


>gi|297676318|ref|XP_002816087.1| PREDICTED: LOW QUALITY PROTEIN: transcription elongation regulator
           1-like [Pongo abelii]
          Length = 1096

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 629 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 688

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 689 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 736

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 737 AKFNPRATFSEFAA-------KHAKDTRFKAIEKM----KDREALFNEFVAAARKKEKED 785

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 786 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 845

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 846 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 898


>gi|297301055|ref|XP_001092838.2| PREDICTED: disks large homolog 5 [Macaca mulatta]
          Length = 1479

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 32/331 (9%), Positives = 90/331 (27%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +L       +     
Sbjct: 203 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNADLSRLEQLGEENQRLLKQTEMLTQQRDTA 262

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E                      
Sbjct: 263 IQLQHQCALSLRRFEAIH--HELNKATAQNKDLQWEMELLQSELTELRTTQVKTAKESEK 320

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
               +D      Y   + +R Q + +    +        K  +   ++K  S+ +     
Sbjct: 321 YREERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAASEEMEALRQ 379

Query: 472 VK--GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +K    +    + +E  +L                         + + L   L     E 
Sbjct: 380 IKDTVTMDAGRANKEVEILR-----------------------KQCKALCQELKEALQEA 416

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 417 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 473

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+   +   +  +   L++ 
Sbjct: 474 DVSRELKELKEQME--SQLEKEARFRQLMAH 502


>gi|296215767|ref|XP_002754259.1| PREDICTED: golgin subfamily A member 5 [Callithrix jacchus]
          Length = 732

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 78/269 (28%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK----LRYYYSQAIRDRLQ 433
           +      + K   +            LE         I+DQ     L+    Q +++RL 
Sbjct: 297 AKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIIQDQSEGNNLQNQALQTLQERLH 356

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 357 EADATLKREQESYKQMQSEFA---------ARLNKVEVERQNLAEAITLAER-------K 400

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    +   +    ++     L+     L     +        E++   L E    E L 
Sbjct: 401 YSDEKKRVEELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLD 460

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 461 SSTANSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQELHD 520

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   IE
Sbjct: 521 QIAGQKASK--QELETELERLKQEFHYIE 547



 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 97/255 (38%), Gaps = 12/255 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSG 445
            E +       +   +++      +N +  +  R   ++A  + +R     +K + E   
Sbjct: 356 HEADATLKREQESYKQMQSEFAARLNKV--EVERQNLAEAITLAERKYSDEKKRVEELQQ 413

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             + +K N     Q+    +   + +++ K     SL+E +    L +  A   E  +  
Sbjct: 414 QVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSSTANSMELEELR 473

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +      E+QKL   +     E +    +++++        E L++L  Q+        
Sbjct: 474 HEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEA---ESAREQLQELHDQIAGQKASKQ 530

Query: 566 TTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             E  +  ++Q +      LY+    L  + ++ E++I ++  +   +  +       E+
Sbjct: 531 ELETELERLKQEFHYIEEDLYRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNSSQ--SEL 588

Query: 625 HIQIHQIESQEAMIE 639
             ++HQ+   E +I+
Sbjct: 589 ESRLHQL--TETLIQ 601


>gi|229496950|ref|ZP_04390655.1| toprim domain protein [Porphyromonas endodontalis ATCC 35406]
 gi|229316052|gb|EEN81980.1| toprim domain protein [Porphyromonas endodontalis ATCC 35406]
          Length = 686

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 96/336 (28%), Gaps = 45/336 (13%)

Query: 44  PFHDEKTPSFHCNDSKG----FYYCFSCHV-KGDHLSFLSALLGCS----FIESVQRLAA 94
           P +D+K  S +              F      GD   F +A+LG      FI+ +  +  
Sbjct: 33  PLYDDKRASCNIYFDTQSQCYRMKDFGNEAYSGDCFWFTAAILGFDVRTEFIKVLTSIIH 92

Query: 95  IAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAI 154
             G+ +P+     E+K   Q         A+   H S  +   +   ++       S   
Sbjct: 93  DLGLNIPIK----ERKTSEQRRCFTRTSTASLVKHKSADSKSSESRRWFHIHEQPFSAEE 148

Query: 155 EMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR 214
           + F L Y    R  +R H++     E    +                +       I    
Sbjct: 149 KDFWLRYGITDRILMRYHVKSLFRYEAVSSQGKPYTLTSTKEEPMFCYVMGDFVKIYRPN 208

Query: 215 GQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFI 274
            ++    G    +     +   P                               N    +
Sbjct: 209 SKLRFLYGGEKQEDYVFGFEQLP-------------------------------NKGDIL 237

Query: 275 ILVEGYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYK 333
            +  G  DVLSL       +  +    ++ E  +  L      I+L +D D+ GLR A +
Sbjct: 238 FITGGEKDVLSLSAHHFNAICFNSETASIPENVIESLQLRFRHIILLYDMDETGLREAQR 297

Query: 334 AIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
             +L+  + +    +        +D   F       
Sbjct: 298 QAELLAKYNVLHLALPLEGTKNEKDISDFFALGHTE 333


>gi|187956912|gb|AAI58062.1| Cgnl1 protein [Mus musculus]
          Length = 1298

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 86/252 (34%), Gaps = 19/252 (7%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           D++ +L + +      ++ +       +  R+R+++  ++    H           R  +
Sbjct: 611 DQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLE 670

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +     R     L + K+ ++    E   L        + +   +  +  R ++ E   L
Sbjct: 671 ESEGELRKSLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSTKRSEDREKGAL 725

Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLW----SATTEAN 570
              L     + +  L  +  Q    R  ER    L   L  +V              +A 
Sbjct: 726 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 785

Query: 571 IVDVRQGYQQA------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           +  +R+  ++A      LA        S+ + ++ +++ +   +    + A L     ++
Sbjct: 786 LQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQL 845

Query: 625 HIQIHQIESQEA 636
             Q+  ++  EA
Sbjct: 846 QRQMEDVKGDEA 857



 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 82/229 (35%), Gaps = 19/229 (8%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + ++D+L ++  +  +      R  +K A   +     Q L    + K +       RE
Sbjct: 697 IRDLQDQLSEMHDELDSTKRSEDR--EKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRE 754

Query: 485 AALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVE-----------QKYF 532
             L          +    QE+  ++   + ELQ L   +                 ++  
Sbjct: 755 RELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQ 814

Query: 533 LPEEIHQRLCERGFGEL---LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              ++ +++ +    +L   + +L+R+           + +    ++  ++  +  ++  
Sbjct: 815 AEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLE 874

Query: 590 --LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             L+  +KEE E   A+   + E E+    +S + +   ++ +    EA
Sbjct: 875 EALVHARKEEKEATCARRALEKELEQAQRELSQVSQEQKELLEKLRDEA 923



 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 101/326 (30%), Gaps = 20/326 (6%)

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA----FEKLIV 376
            +G+          + +         R     LS   D     +           E+L+ 
Sbjct: 672 SEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQ 731

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ---KLRYYYSQAIRDRLQ 433
               L D+L  +E +       +                 DQ   KL+  Y   ++   +
Sbjct: 732 AKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRE 791

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
            + +          R         +     + L + +        +   R A L   +  
Sbjct: 792 SVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQM-- 849

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
              +  ++ Q    +R   +E+Q+L   L     E+K        +R  E+   +  ++L
Sbjct: 850 -EDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCA---RRALEKELEQAQREL 905

Query: 554 DR--QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ---IAQVTAK 608
            +  Q +   L     EA   +  +  +  +   +    L +  ++++K+   IA+ +  
Sbjct: 906 SQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERW--HLDKTIQKLQKEMADIAEASRT 963

Query: 609 GEAEKTAILISILHEVHIQIHQIESQ 634
              E    L     +   ++ ++++Q
Sbjct: 964 SSLELQKQLGEYKEKNRRELAEMQTQ 989


>gi|159107739|ref|XP_001704146.1| Hypothetical protein GL50803_41212 [Giardia lamblia ATCC 50803]
 gi|157432199|gb|EDO76472.1| hypothetical protein GL50803_41212 [Giardia lamblia ATCC 50803]
          Length = 1319

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/260 (11%), Positives = 68/260 (26%), Gaps = 31/260 (11%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH----SGYGRYWK 451
           +  +   EL  + K     I +   R      +R  L    Q+             R  +
Sbjct: 74  SENERLRELVTNAKEQEATIAEYAKRDEEIVQLRSLLNTSEQENSRRVAELEEELARTKE 133

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT----------LINHPAILQEQ 501
           +     +Q         S  V+ +L +  + RE  +             +      L   
Sbjct: 134 RLKESEEQLEILNSTTPSREVEEQLRRDLAEREREIDELKKTVKAQEAEIARLQDALHAA 193

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
                       E + L S L              + + L       L+     ++ +  
Sbjct: 194 CDAAEADALRT-ENESLRSMLAKVAESGSAED--ALREELDR--LRALVISRGIEIANMD 248

Query: 562 LWSATTEANIVDVRQGYQQAL------------ALYKRFRLLSRQKEEIEKQIAQVTAKG 609
              A +E     + +   + L             L    R    Q  E+   ++      
Sbjct: 249 RKLAESETEYNRLLEELNRVLAEVRDDDSAQVKNLRAELRAREEQISELRSLLSAQGQVV 308

Query: 610 EAEKTAILISILHEVHIQIH 629
           ++ +   L++ +  +  ++ 
Sbjct: 309 DSTREVDLLAEVDALKRELR 328


>gi|126322958|ref|XP_001364346.1| PREDICTED: similar to plectin 11 isoform 3 [Monodelphis domestica]
          Length = 4553

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 89/275 (32%), Gaps = 14/275 (5%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI---KD 417
               +       ++L  E    +    + E E        E            N +   KD
Sbjct: 2200 DHQKDILDEELQRLKEEVTDAMRQKTQVEEELFKVKIQMEELVKLKARIEEENKMLILKD 2259

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +     +     ++++Q+ ++            +      +     + L +  L +   +
Sbjct: 2260 KDNTQKFLVEEAEKMKQVAEEAARLSVEAQEAARLRKLAEEDLAQQRALAEKMLKEKMQA 2319

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             + + R  A    L     + QE  ++L + +  +   Q+L         E + F     
Sbjct: 2320 VQEATRLKAEAEMLQKQKDLAQEHAKKLQEDK--DQMEQRLAQ-------ETEGFQKTLE 2370

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             +R  +       ++L   V +  L  A  E +    ++  ++      R  L +R+K  
Sbjct: 2371 AERRRQLEMSAEAERLKLHVTEMSLAQAKAEEDARKFKKQAEEIGEKLHRTELATREKMT 2430

Query: 598  I--EKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            +    +I +  +  +A+K    I+ L     ++ +
Sbjct: 2431 LVHTLEIQRQQSDKDADKLKDAIAELEREKEKLKR 2465



 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 66/232 (28%), Gaps = 40/232 (17%)

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
             E     R   + A  R ++     + +      +  ++ +  E  L    +        
Sbjct: 2143 AELEAAKRAQAEQAALRQKQAADAEMEKHKKFAEQTLRQKAQVEQELTKVKLQ------- 2195

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ---- 556
              +        + ELQ+L   +     ++     E    ++      +L  +++ +    
Sbjct: 2196 LEETDHQKDILDEELQRLKEEVTDAMRQKTQVEEELFKVKIQMEELVKLKARIEEENKML 2255

Query: 557  -------------VRDAGLWSATTEANIVDVRQGYQQALA------LYKRFRLLSRQKEE 597
                              +     EA  + V       L       L ++  L  +  +E
Sbjct: 2256 ILKDKDNTQKFLVEEAEKMKQVAEEAARLSVEAQEAARLRKLAEEDLAQQRALAEKMLKE 2315

Query: 598  IEKQIAQVTA--------KGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
              + + + T         + + +        L E   Q+ Q  +QE   EGF
Sbjct: 2316 KMQAVQEATRLKAEAEMLQKQKDLAQEHAKKLQEDKDQMEQRLAQET--EGF 2365


>gi|81175168|sp|P49025|CTRO_MOUSE RecName: Full=Citron Rho-interacting kinase; Short=CRIK; AltName:
           Full=Rho-interacting, serine/threonine-protein kinase 21
          Length = 2055

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 95/298 (31%), Gaps = 38/298 (12%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
             +   +   EKL         +  K        ++ + + +    ++   N +KD    
Sbjct: 663 QAKERAERELEKLHNREDSSEGIKKKLVEAEERRHSLENKVKRLETMERRENRLKDDIQT 722

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+               +         +++ + + K    K+ 
Sbjct: 723 KSEQIQQMADKILELEEKHREAQVSAQHLEVHLKQKEQHYEEKIKVLDNQIKKDLADKE- 781

Query: 481 SLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                +L   +  H     E+ + L++    I   +++++ L   +       K      
Sbjct: 782 -----SLENMMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANSS 836

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALALY 585
           +  +   +   E++ +L +Q       +   EA    + +  +           + L L 
Sbjct: 837 LFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKSRLLELE 896

Query: 586 KRFRL-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            R R            L RQ  E++  + +  +     +   L +    +  Q+ Q +
Sbjct: 897 TRLREVSLEHEEQKLELKRQLTELQLSLQERES-----QLTALQAARAALESQLRQAK 949


>gi|332255126|ref|XP_003276684.1| PREDICTED: LOW QUALITY PROTEIN: protein CASP-like [Nomascus
           leucogenys]
          Length = 692

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 98/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 115 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 174

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 175 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 234

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 235 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 294

Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 295 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 354

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 355 QLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 398


>gi|325180543|emb|CCA14949.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5016

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4157 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4216

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4217 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4276

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4277 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4329

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4330 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4387

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4388 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4447

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4448 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4487


>gi|325180539|emb|CCA14945.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5087

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4185 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4244

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4245 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4304

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4305 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4357

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4358 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4415

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4416 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4475

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4476 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4515


>gi|325180536|emb|CCA14942.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5063

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4196 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4255

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4256 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4315

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4316 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4368

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4369 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4426

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4427 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4486

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4487 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4526


>gi|325180534|emb|CCA14940.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5056

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4185 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4244

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4245 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4304

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4305 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4357

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4358 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4415

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4416 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4475

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4476 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4515


>gi|325180533|emb|CCA14939.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5055

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4196 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4255

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4256 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4315

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4316 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4368

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4369 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4426

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4427 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4486

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4487 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4526


>gi|325180532|emb|CCA14938.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5081

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4175 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4234

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4235 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4294

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4295 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4347

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4348 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4405

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4406 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4465

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4466 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4505


>gi|325180529|emb|CCA14935.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5096

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4175 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4234

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4235 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4294

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4295 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4347

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4348 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4405

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4406 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4465

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4466 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4505


>gi|325180526|emb|CCA14932.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5073

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4175 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4234

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4235 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4294

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4295 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4347

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4348 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4405

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4406 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4465

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4466 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4505


>gi|320587336|gb|EFW99816.1| spindle-pole body protein [Grosmannia clavigera kw1407]
          Length = 1433

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 99/288 (34%), Gaps = 24/288 (8%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR--- 429
            L   +   VD +  +   +R         +   + +  ++ ++D+  + +  + +R   
Sbjct: 216 ALKENTELKVDKVTLQRELHRYKKLVASAEQNLENYRREMHDMQDKMAQRHADKDLRAEV 275

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL-L 488
           +RL++       +     R     A                  +    K+  L E  L +
Sbjct: 276 ERLREELAAKNADLDDLQRQANAQAEKLRDDIEDLEADVREKDRIISQKEDELEELQLSM 335

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCERGF 546
              +      ++  QEL +    + +L +    +      V +     +E+  +L E   
Sbjct: 336 EARLEDN---RQHIQELEEKAGSSEKLDEAKETIEGLEADVRRLEQQSDEMKTKLDEAVT 392

Query: 547 GELLKQL----------DRQVRDAGLWSATTEANIV---DVRQGYQQALALYKRFRLLSR 593
                +           ++ V   GL     E       DV +  ++   L ++    +R
Sbjct: 393 ERQRAEDDLEELQEEMANKSVHTKGLSRQVEEKLARLQTDVDKAQRECAQLSEKRDEQAR 452

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILIS--ILHEVHIQIHQIESQEAMIE 639
           + +++++++ +     +  +   L +   L EV   ++ +  Q+A+++
Sbjct: 453 EADDLKQKLKESRQARDDAEREALSASTQLKEVQADLNMLRDQKALLQ 500


>gi|302771279|ref|XP_002969058.1| hypothetical protein SELMODRAFT_91165 [Selaginella moellendorffii]
 gi|300163563|gb|EFJ30174.1| hypothetical protein SELMODRAFT_91165 [Selaginella moellendorffii]
          Length = 1264

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 88/315 (27%), Gaps = 32/315 (10%)

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             +      +GE+    ++ +      +    +  + +   +   E+   N      E+ 
Sbjct: 548 LHIFQFETKQGEEICVALQTHINDVMLRRYSRTRSVANGAIQSNGESAVPNFKPPGIEVY 607

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
                 ++ + D+  +        D+  + F+    +        +        +   Q 
Sbjct: 608 EKHVQDMSRLLDESQKK------ADQASRFFELREKDKRQTSLLEELEGFKDRLRAEQQT 661

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPA----------------ILQEQYQELADIR 509
           +   +  + KL K    +E AL   L    A                +     +   D+ 
Sbjct: 662 VTDITQEREKLRKAVEEKETALQAALAEKSADDEHGREEAAPTKKGILRGSIGRRDRDLP 721

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
           +       L + +     E K    E        +      + L+++V            
Sbjct: 722 FAEKASSALEAQVKDLRNELKSKSEEARLAEERNKKLMNEKQLLEQKVSRVEKLKGEETK 781

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--------EKTAILISIL 621
            +    +  +    L  R   L ++  E  ++I+   A            + +   +  L
Sbjct: 782 VLEKKFEEERS--MLRVRISELEKKLNERTQEISVAEAALSLRTSELEAMQCSMKELEEL 839

Query: 622 HEVHIQIHQIESQEA 636
            E+   I +  +Q A
Sbjct: 840 REIKEDIDRKNAQTA 854


>gi|299473300|emb|CBN77699.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 6779

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 63/159 (39%), Gaps = 9/159 (5%)

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
             L+       E  Q LA +   + E     + +  DF  ++  +   I Q++      + 
Sbjct: 6094 LLVEKNTARAEAMQRLAKMNATDEERADAAADVDDDFAGRQQQMETSIIQQMEPPHLEQQ 6153

Query: 550  LKQLDRQVRDAG--LWSATTEANIVDVRQ--GYQQALALYKRFRLLSRQKEEIEKQIAQV 605
            L+   RQ+++      +   E+ +  +++    +    L      + R+KEE  K++ + 
Sbjct: 6154 LELRQRQLQEIAGTFRAIAPESALERLQEINATRHEEELENFHAAMEREKEERLKRLQEE 6213

Query: 606  TAKGEAEKTAILISILHEVHIQIH-----QIESQEAMIE 639
             +K E +      + +  +  +       + E+QEA ++
Sbjct: 6214 RSKFEEQLRQRHDAEMQRLQAEEQKVLDVEREAQEARLK 6252



 Score = 37.6 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 75/222 (33%), Gaps = 15/222 (6%)

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
            +L Q+ + E +G  R     +     +  +    +  L     + +    E   L  L  
Sbjct: 6155 ELRQRQLQEIAGTFRAIAPESALERLQEINATRHEEELENFHAAMEREKEER--LKRLQE 6212

Query: 494  HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL--- 550
              +  +EQ ++  D       LQ     +     E +    +E    L  +   E     
Sbjct: 6213 ERSKFEEQLRQRHDAEMQ--RLQAEEQKVLDVEREAQEARLKEKQAELERQREEEKRKME 6270

Query: 551  ---KQLDRQVRDAGLWSATTEANIVD-VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
                QL+   ++A L     +        +  +Q+       +L +R++++ E ++ +  
Sbjct: 6271 ERSDQLNASQKEALLEQFKLDQAAELGALKAEEQSSKSKLEQKLAARRQKKTE-EMRKRE 6329

Query: 607  AKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             +   EK       L E+  Q    + ++A   G    SG +
Sbjct: 6330 ERQLKEKETRDAQRLQEIERQ---TQLEDAAEVGALSASGSV 6368


>gi|297706954|ref|XP_002830285.1| PREDICTED: myosin-7B-like [Pongo abelii]
          Length = 1991

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 86/279 (30%), Gaps = 13/279 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
              +  +  +   L   D        N        +A L+   +     ++ +K       
Sbjct: 1621 ELSQVKAEVDRKLAEKDEECANLRRNHQRAVESLQASLDAETRARNEALRLKKKMEGDLN 1680

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS---LR 483
             +  +L    ++     +       +    +  +   QRL      + +  ++ +     
Sbjct: 1681 DLELQLGHATRQATEAQAATRLMQAQLKEEQAGRDEEQRLAAELREQAQALERRASLLAA 1740

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E   L   +      +   ++  ++      L  L S       ++K    +    +L  
Sbjct: 1741 ELEELRAALEQGERSRRLAEQ--ELLEATERLNLLHSQNTGLLNQKKKLEAD--LAQLSG 1796

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   ++ + + +     +        ++++    +  L +  + L +   E++ ++ 
Sbjct: 1797 EVEEAAQERREAEEKAKKAITDAA-MMAEELKKEQDTSAHLERMKKTLEQTVRELQARLE 1855

Query: 604  QVTAK---GEAEKTAILISILHEVHIQIHQIESQ--EAM 637
            +       G  ++   L + + E+  ++   + Q  EA+
Sbjct: 1856 EAEQAALRGGKKQVQKLEAKVRELEAELDAEQKQHAEAL 1894


>gi|297690339|ref|XP_002822578.1| PREDICTED: centrosomal protein of 164 kDa-like isoform 2 [Pongo
           abelii]
          Length = 1454

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 83/293 (28%), Gaps = 51/293 (17%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                      ++ I  S            E       ++           +      +L
Sbjct: 717 EQKHRQMLEQLKEEIEASEKSEQAALNAAKEKALQQLREQLEGERKEAVAALEKEHSAEL 776

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                    +RL  L +    E     +   + A+ +++    + L Q      + +   
Sbjct: 777 ---------ERLCSLLEAKHREVVSSLQKKIEEAQQKEEAQLQKCLGQVEHRVHQKAYHV 827

Query: 481 SLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           +  E  L   L      ++ E  + L  ++    E Q++ +     +  ++     E+  
Sbjct: 828 AEYEHELSSLLREKRQEVEGEHERRLDKMK---EEHQQVMAKAREQYEAEERKQRAELLG 884

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L        L++L R                    +  +Q    +KR   L R+  E E
Sbjct: 885 HLTGE-----LERLQR--------------AHERELETVRQEQ--HKRLEDLRRRHREQE 923

Query: 600 KQIAQVTAKGE----------------AEKTAILISILHEVHIQIHQIESQEA 636
           +++  +    E                 E        L +V  Q+  ++S+EA
Sbjct: 924 RKLQDLELDLETRAKDVKARLALLEVQEETARREKQQLLDVQRQV-ALKSEEA 975


>gi|239828348|ref|YP_002950972.1| hypothetical protein GWCH70_3039 [Geobacillus sp. WCH70]
 gi|239808641|gb|ACS25706.1| hypothetical protein GWCH70_3039 [Geobacillus sp. WCH70]
          Length = 1892

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 100/284 (35%), Gaps = 17/284 (5%)

Query: 360 DSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
              ++  G+ A   + +V++L  V+    +E  N        +   E   +        +
Sbjct: 540 AQVLKANGQEAMARRQVVQALTEVEQSVGQEKPNVRDVANQVKQVREQATREPNLSKAVE 599

Query: 419 KLRYYYSQ------AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           ++R Y          + +++ +  ++ + +    G   +   R       ++  ++++  
Sbjct: 600 QVRQYIVDAPEMDWEVAEKVNRALREVV-QLQQMGSEGEARVRLVQALTQAEETLRANET 658

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           K + S+  +     +   ++    + +        +  +N+  +++   +     E +  
Sbjct: 659 KPQPSQNLAELVKDVRSQVMREVDLTKALAHVRTQLVDNNDVPEEVRQKVDQVIKEAQTL 718

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                 +++      + L +L++ V  A       ++N+ DV    +Q      R   LS
Sbjct: 719 KANG-QEQIARHQVIQALTELEQSVEQA-------KSNVRDVANQVKQVREQTLREPDLS 770

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           +  E++ + I     + + E    +   L EV     Q    EA
Sbjct: 771 KAVEQVRQHIVDA-PEMDQEVAEKVNRALREVMQLQQQGRESEA 813


>gi|134079012|emb|CAL00369.1| unnamed protein product [Aspergillus niger]
          Length = 895

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 89/286 (31%), Gaps = 12/286 (4%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P               I     +++ +  +           E    E+  KN +   +D+
Sbjct: 290 PQDTALLEQVKLLSAKIGTYEAMLEEVRGQLAAKTEQVNGMEERSDELRSKNQMLAARDE 349

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
           K +    + + ++L+Q   +            + + +   ++      +     +  +  
Sbjct: 350 KAKAAQQEDLINKLRQELDRVNCLLIMANGRARAHYKSDSREQTLANRVAELEKQLAMKT 409

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +       ++ +L     +  E+   +A  R    E QKL +       +       ++ 
Sbjct: 410 EADANSRGIIESLQAELQVRTEEANAIAS-RLVTVEAQKLRAAEEEVLRKDTE--IRQLQ 466

Query: 539 QRLCERGFG------ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
           +RL  +         EL    D+      L     E           QA   +     LS
Sbjct: 467 ERLQVQEDQSYERAMELSAAEDQLTSQDVLIHDLQERIRAQEATPQVQATEHHAAEEQLS 526

Query: 593 RQ---KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            Q     +++++I    A  + + T  L +    + +++ +I+  E
Sbjct: 527 SQAVLIHDLQERIRAQEAAPQVQATEELHAAEKVLQMKVAEIQDLE 572


>gi|119587725|gb|EAW67321.1| centrosomal protein 164kDa, isoform CRA_d [Homo sapiens]
          Length = 1455

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 82/293 (27%), Gaps = 51/293 (17%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                      ++ I  S            E       ++           +      +L
Sbjct: 718 EQKNRQMLEQLKEEIEASEKSEQAALNAAKEKALQQLREQLEGERKEAVATLEKEHSAEL 777

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                    +RL    +    E     +   + A+ +++    + L Q      + S   
Sbjct: 778 ---------ERLCSSLEAKHREVVSSLQKKIQEAQQKEEAQLQKCLGQVEHRVHQKSYHV 828

Query: 481 SLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           +  E  L   L      ++ E  + L  ++    E Q++ +     +  ++     E+  
Sbjct: 829 AGYEHELSSLLREKRQEVEGEHERRLDKMK---EEHQQVMAKAREQYEAEERKQRAELLG 885

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L        L++L R                    +  +Q    +KR   L R+  E E
Sbjct: 886 HLTGE-----LERLQR--------------AHERELETVRQEQ--HKRLEDLRRRHREQE 924

Query: 600 KQIAQVTAKGE----------------AEKTAILISILHEVHIQIHQIESQEA 636
           +++  +    E                 E        L +V  Q+  ++S+EA
Sbjct: 925 RKLQDLELDLETRAKDVKARLALLEVQEETARREKQQLLDVQRQV-ALKSEEA 976


>gi|117619753|ref|YP_855768.1| chromosome segregation protein SMC [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561160|gb|ABK38108.1| chromosome segregation protein SMC [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1124

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 47/116 (40%), Gaps = 7/116 (6%)

Query: 540 RLCERGFGELL----KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +L ++   +L+    ++L R   +         A   D+     +   L  +     ++ 
Sbjct: 775 QLEQQNLRQLIALREQELARLGLELAELKEPGAAPGQDLSPLLAEQRNLEAQQLACHQRL 834

Query: 596 EEIEKQIAQVTAKGEAE--KTAILISILHEVHIQIHQ-IESQEAMIEGFGKMSGRL 648
            E+E+Q+ ++     A+  +   +   L  + ++  + +  ++ + E F ++  RL
Sbjct: 835 AELERQLTELEQARSADHKQLVQIQEKLATLRLERERNLTRRQGLHEQFEELGVRL 890


>gi|109005664|ref|XP_001082586.1| PREDICTED: protein Hook homolog 1 isoform 1 [Macaca mulatta]
          Length = 728

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 104/304 (34%), Gaps = 25/304 (8%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D             + ++  + 
Sbjct: 269 DDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQ 328

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      +R +++ L +  +          ++  +    +   +   +            
Sbjct: 329 KLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSE 388

Query: 481 SLREAALLLTLIN----HPAILQEQYQELAD---IRYDNNELQ--KLWSFLFSDFVEQKY 531
           S R   L   +      H A+L+E+ + +     ++  N EL+  ++     +       
Sbjct: 389 SKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTGASAA 448

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALA------- 583
              E +   +    + E+  +L  + +   L    +E   I ++++  +Q          
Sbjct: 449 KSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELET 508

Query: 584 ----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQE 635
                 +R R L +Q E+++K + +  +K E E ++ L   L     ++     +++ ++
Sbjct: 509 EQRLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQ 568

Query: 636 AMIE 639
            +IE
Sbjct: 569 ELIE 572


>gi|40789033|dbj|BAA83004.2| KIAA1052 protein [Homo sapiens]
          Length = 1456

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 82/293 (27%), Gaps = 51/293 (17%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                      ++ I  S            E       ++           +      +L
Sbjct: 719 EQKNRQMLEQLKEEIEASEKSEQAALNAAKEKALQQLREQLEGERKEAVATLEKEHSAEL 778

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                    +RL    +    E     +   + A+ +++    + L Q      + S   
Sbjct: 779 ---------ERLCSSLEAKHREVVSSLQKKIQEAQQKEEAQLQKCLGQVEHRVHQKSYHV 829

Query: 481 SLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           +  E  L   L      ++ E  + L  ++    E Q++ +     +  ++     E+  
Sbjct: 830 AGYEHELSSLLREKRQEVEGEHERRLDKMK---EEHQQVMAKAREQYEAEERKQRAELLG 886

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L        L++L R                    +  +Q    +KR   L R+  E E
Sbjct: 887 HLTGE-----LERLQR--------------AHERELETVRQEQ--HKRLEDLRRRHREQE 925

Query: 600 KQIAQVTAKGE----------------AEKTAILISILHEVHIQIHQIESQEA 636
           +++  +    E                 E        L +V  Q+  ++S+EA
Sbjct: 926 RKLQDLELDLETRAKDVKARLALLEVQEETARREKQQLLDVQRQV-ALKSEEA 977


>gi|15901108|ref|NP_345712.1| hypothetical protein SP_1247 [Streptococcus pneumoniae TIGR4]
 gi|111658430|ref|ZP_01409109.1| hypothetical protein SpneT_02000401 [Streptococcus pneumoniae
           TIGR4]
 gi|14972729|gb|AAK75352.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
          Length = 1179

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E  +E A +  +   L+ L   +       +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAEEEASLGSEEATLKTLQDEMARLTESLEAIKSQGEQARIQEQGLFLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  I  + +G  QA      +R   +S  K+ +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEEIDRLSEGDWQADKENCQERLAAISSDKQNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 833



 Score = 37.9 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 91/277 (32%), Gaps = 24/277 (8%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
            + A  K + + +  +    +            E+     + +      + + L     +
Sbjct: 693 SEEATLKTLQDEMARLTESLEAIKSQGEQARIQEQGLFLAYQQTSQQVEELETLWKLQEE 752

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            I    +  +Q               + ++ + +    +  ++++ +   + +  L +A 
Sbjct: 753 EIDRLSEGDWQADKENCQERLAAISSDKQNLEAEIEEIKSNKNAIQERYQNLQEELAQAR 812

Query: 487 LLLTLIN-----HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           LL T +        A ++   +EL ++ ++  E+Q+L      +             +++
Sbjct: 813 LLKTELQGQKRYEVADIERLGKELDNLDFEQEEIQRLLQEKIDNL------------EKV 860

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                 +  ++   Q  +        +  + D+                L + +++ E+ 
Sbjct: 861 DTELLSQQAEESKTQKTNLQQGLIRKQFELDDIEGQLDDI------ASHLDQARQQNEEW 914

Query: 602 IA-QVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           I  Q  A+ + EK +  +  L       +QI   EA+
Sbjct: 915 IRKQTRAEAKKEKVSERLRHLQSQLTDQYQISYTEAL 951


>gi|57639978|ref|YP_182456.1| flagella-related protein C [Thermococcus kodakarensis KOD1]
 gi|57158302|dbj|BAD84232.1| archaeal flagella-related protein C [Thermococcus kodakarensis
           KOD1]
          Length = 158

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 47/114 (41%), Gaps = 2/114 (1%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E+++   EE+ + +  R   E L QL  +V +        +  I  +++  Q+      R
Sbjct: 21  EEEHIDLEELEEAVENREENEQLNQLMERVNEIENDLPRIKIGIDTLKKQMQELRDEIDR 80

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQEAMIE 639
                +    + + I+Q     + + +    L S + ++  ++  ++ + A I+
Sbjct: 81  LDKTIKDVMMLYEVISQEINPFKEQMSQENPLSSEIQDIRKELEDLKLEIAQIK 134


>gi|153945790|ref|NP_002463.2| myosin-8 [Homo sapiens]
 gi|3041707|sp|P13535|MYH8_HUMAN RecName: Full=Myosin-8; AltName: Full=Myosin heavy chain 8; AltName:
            Full=Myosin heavy chain, skeletal muscle, perinatal;
            Short=MyHC-perinatal
 gi|225000798|gb|AAI72386.1| Myosin, heavy chain 8, skeletal muscle, perinatal [synthetic
            construct]
          Length = 1937

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHTRVVETMQSTLDAEIRSRNDALRVKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1624 DLNEM-EIQLNHANRLAAESLRNYRNTQGILKETQLHLDDALRGQEDLKEQ------LAI 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELWATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828


>gi|67526005|ref|XP_661064.1| hypothetical protein AN3460.2 [Aspergillus nidulans FGSC A4]
 gi|40743814|gb|EAA63000.1| hypothetical protein AN3460.2 [Aspergillus nidulans FGSC A4]
          Length = 1548

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 80/275 (29%), Gaps = 51/275 (18%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
           P+  +      +  S ++P E+ +  +         +D +L   Y   I ++++   Q  
Sbjct: 242 PMNVLSQDMARQFLSSSSPAEKYKFFVKGVQLEQLDQDYRLIEEYGDQIEEKIKSKQQDV 301

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
                   R   +       +  + R  Q  L +     +   +E            I  
Sbjct: 302 --SVLKNRRDAAERKLEMSDQQENLRERQRKLRRQAAWAQVEEQER-----------IRD 348

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
               E++ +   ++++ ++ + +       +    E I                 +  R+
Sbjct: 349 SLIAEISSL---DSKISEVEAEVARCDAAIREVEAEAITA--------------AQYCRE 391

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE----IEKQIAQVTAKGEAE--- 612
           A       +    D+   + +AL      +   R+  E       +I Q+  + + E   
Sbjct: 392 ASAKVDNAQNERNDIEARWNEALNERHELQAEQRRIREHVREANARIQQLQHQVDEETRR 451

Query: 613 --------------KTAILISILHEVHIQIHQIES 633
                         +         EV  QI ++E 
Sbjct: 452 LADLHGGGYSRKLDELERAKQDAMEVRKQIDELEQ 486


>gi|313159181|gb|EFR58554.1| ATP-dependent chaperone protein ClpB [Alistipes sp. HGB5]
          Length = 872

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/138 (8%), Positives = 45/138 (32%), Gaps = 7/138 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             L+ ++Q++        +   +   L   +             R+ +      ++   R
Sbjct: 333 KALERRFQKVMVDEPTQEDAISILRGLKDRYENHHQV-------RIKDEAIVAAVELSTR 385

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            +    L     +       +   +  ++ +    L R+  ++E +   +  + + E+  
Sbjct: 386 YITSRFLPDKAIDLVDEAASRLRLEMNSVPEEIDTLDRRVRQLEIEREAIRREKDKERVE 445

Query: 616 ILISILHEVHIQIHQIES 633
            L   + E+  +  ++ +
Sbjct: 446 QLTKEIEELKSRDAEMRA 463



 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/207 (12%), Positives = 69/207 (33%), Gaps = 17/207 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++K       +  +  +++    + +   +  +++ A++  +    
Sbjct: 325 YQKYFEQDKALERRFQKVMVDEPTQEDAISILRGLKDRYENHHQVRIKDEAIVAAVELST 384

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             +  ++     I   +    +L   + S   E            +           + R
Sbjct: 385 RYITSRFLPDKAIDLVDEAASRLRLEMNSVPEEIDTLDRRVRQLEIEREA-------IRR 437

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------AQVTAK 608
           +     +   T E   +  R    +A   ++  R L ++ +E + +I        Q   +
Sbjct: 438 EKDKERVEQLTKEIEELKSRDAEMRA--KWQGQRDLLKRIQENKDRIEQLKIEAQQAERQ 495

Query: 609 GEAEKTAIL-ISILHEVHIQIHQIESQ 634
           G+  K A +    + E   +I   + +
Sbjct: 496 GDYGKVAEIRYGKIQEAEKEIAAFQEE 522


>gi|296473406|gb|DAA15521.1| myosin, heavy chain 11, smooth muscle [Bos taurus]
          Length = 1933

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 87/264 (32%), Gaps = 11/264 (4%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     +     E E        ++ ELE  L      +++++ R    QA R ++ Q  
Sbjct: 893  QEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRSQQLQAERKKMAQQM 952

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                 +        +K    +       + ++  ++          +E  LL   I+   
Sbjct: 953  LDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNKLSKERKLLEERISDLT 1012

Query: 497  I-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEIHQRLCER--GFGELLK 551
              L E+ ++  ++    N+ + + S L       E+     E++ ++L        E + 
Sbjct: 1013 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLDGEASDLHEQIA 1072

Query: 552  QLDRQVRDAGLWSATTEANIV----DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            +L  Q+ +  +  A  E  +      +     Q     K+ R L     ++++ +    A
Sbjct: 1073 ELQAQIAELKMQLAKKEEELQAALGRLDDEMAQKNNALKKIRELEGHISDLQEDLDSERA 1132

Query: 608  KGEAEKTAI--LISILHEVHIQIH 629
                 +     L   L  +  ++ 
Sbjct: 1133 ARNKAEKQKRDLGEELEALKTELE 1156



 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 64/233 (27%), Gaps = 35/233 (15%)

Query: 418  QKLRYYYSQAIRDRL---QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
               +   ++ +   +     L  +     +   +  ++    +         ++ +  + 
Sbjct: 1707 DLEKDELAEELASSVSGRNALQDEKRRLEARIAQLEEELEEEQGNTEAMSERVRKATQQA 1766

Query: 475  KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            +        E +            Q+       +   N EL+     +      +     
Sbjct: 1767 EQLSNELATERS----------AAQKNENARQQLERQNKELRSKLQEMEGAVKSKFKSTI 1816

Query: 535  EEIHQRL---------CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
              +  ++           R      K L ++ +         E       Q  +QA    
Sbjct: 1817 AALEAKIAQLEEQVEQEAREKQATAKALKQKDKKLKEALLQVEDERKMAEQYKEQAEKGN 1876

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIESQEAM 637
             R + L RQ EE E            E++  + +   ++  ++    ES EAM
Sbjct: 1877 LRVKQLKRQLEEAE------------EESQRINANRRKLQRELDEATESNEAM 1917


>gi|269925952|ref|YP_003322575.1| ATP-dependent protease La [Thermobaculum terrenum ATCC BAA-798]
 gi|269789612|gb|ACZ41753.1| ATP-dependent protease La [Thermobaculum terrenum ATCC BAA-798]
          Length = 846

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 69/222 (31%), Gaps = 10/222 (4%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--GPSQRLMQSSLVK 473
            D          +   L++     +    G  R         +       + + +  +  
Sbjct: 102 PDDIYMEGTVGRVAQMLRRPDGTLMVAMQGLERMRILQVVQEEPYLVADIEVIKEDYVQD 161

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-FSDFVEQKYF 532
            ++              L  +P + +E    +++I      +  + S L       Q+  
Sbjct: 162 IEIEALRRNAIQNFQKLLSLNPQLPEELGTYVSNISDARQVVYLIASSLRIDLQSRQEIL 221

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
               +  +L      E+L    + +          E ++   ++ Y     L ++ + + 
Sbjct: 222 ELNSVRDKLLR--INEILNHEIQVLEIGRQIQNQAEEHMGKAQREYL----LREQLKAIQ 275

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIHQIES 633
           R+  E ++QIA+V    E      L      +V  ++ ++E 
Sbjct: 276 RELGEEDEQIAEVNQLREKASQVKLSEEARSQVEKELARLER 317


>gi|295673286|ref|XP_002797189.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226282561|gb|EEH38127.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 657

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 7/118 (5%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           +        I   L E+         D+  +  G+     +  + +  +  +QA      
Sbjct: 87  DDARAQNAAIIDELKEQVKKAETVS-DQYRKQLGVLQLRLDEAVSEQSRLEEQAHERDVS 145

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKT----AILISILHE--VHIQIHQIESQEAMIE 639
              L  + +E+ +QI  +    EAE+T            E  +   I +++   A  E
Sbjct: 146 LNALQVEVKELTRQIRDLEQAHEAERTGMAEEKEQQRKREGDLQSTIQRLKETIAQKE 203


>gi|238481843|ref|XP_002372160.1| hypothetical protein AFLA_072420 [Aspergillus flavus NRRL3357]
 gi|220700210|gb|EED56548.1| hypothetical protein AFLA_072420 [Aspergillus flavus NRRL3357]
          Length = 1839

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 79/230 (34%), Gaps = 13/230 (5%)

Query: 408  LKNCINHIKD-QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
                   I D  KL     +    +LQ+  ++  +E        K      D++      
Sbjct: 1532 FDAINQTIGDIGKLATETIENAERKLQEQMEEKQSELEKMANELKAMKEKVDEENIIANK 1591

Query: 467  MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
             ++ L      K  +     +   +  +P +  E  +EL        E+QK    L + F
Sbjct: 1592 QKAELEWVHAQKAIATEARHVGEAIFCNP-LWIEIEKELNK---AGEEIQKHADAL-AYF 1646

Query: 527  VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
            V  +++   E   R  +R     +  + +   ++       +    ++++   +      
Sbjct: 1647 VNGEHYKALEALTRDKKRELDRQIASIQKLEEESKKIETKLKLARQELKKNKGRITE--- 1703

Query: 587  RFRLLSRQKEEIEKQIA----QVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +   L ++ E ++ ++     +   K + +    + + +  +  ++ +I+
Sbjct: 1704 KETKLQKEVERLQGELKTRPFEDAYKAKLQDHESIAAQIQWIQKKLDEIK 1753


>gi|187951929|gb|AAI38367.1| Myo18a protein [Mus musculus]
          Length = 2047

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 37/349 (10%), Positives = 90/349 (25%), Gaps = 31/349 (8%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   +  +  D   F +      
Sbjct: 1469 RRFDSELSQAHEETQREKLQREKLQREKDMLLAEAFSLKQQMEEKDLDIAGFTQKVVSLE 1528

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1529 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGSIQMLEQAKLRLEMEME 1588

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K  ++    E+ L   
Sbjct: 1589 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKALREKRELESKLSTL 1647

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1648 SDQVNQRDFESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQLKNQLEESEFT- 1706

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1707 ----CAAAVKARKAMEVEMEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1762

Query: 609  GE-----------------------AEKTAILISILHEVHIQIHQIESQ 634
                                       +         E+  ++  ++SQ
Sbjct: 1763 MNELMKKHKAAVAQASRDMAQMNDLQAQIEESNKEKQELQEKLQALQSQ 1811



 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1787 LQAQIEESNKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFEK 1843

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1844 TQVKRLENLASRLKETMEKLTEERDQRAAAENREKEQNKRLQRQLRDTKEEMSELARKEA 1903



 Score = 37.9 bits (86), Expect = 4.7,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 93/304 (30%), Gaps = 34/304 (11%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             +      ++  VD   KR  +        E+       +   +   D        Q ++
Sbjct: 1378 EWRLKYERAVREVDFTKKRLQQELEDKMEVEQQSRRQLERRLGDLQADSDESQRALQQLK 1437

Query: 430  DRLQQLFQK----------YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             + Q+L  +              +    +  ++      Q     +  +    K +  K 
Sbjct: 1438 KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEETQREKLQREKLQREKD 1497

Query: 480  PSLREAALLLTLINHPAI-----------LQEQYQELADIRYDNNE-LQKLWSFLFSDFV 527
              L EA  L   +    +           L+ + Q+++     +   L K+   L     
Sbjct: 1498 MLLAEAFSLKQQMEEKDLDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEA 1557

Query: 528  ----EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ------- 576
                +++    +    ++ E+    L  +++R  +       + +  + + RQ       
Sbjct: 1558 KVKDQEEELDEQAGSIQMLEQAKLRLEMEMERMRQTHSKEMESRDEEVEEARQSCQKKLK 1617

Query: 577  -GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                Q    Y+  +   R+K E+E +++ ++ +           +  ++      +   +
Sbjct: 1618 QMEVQLEEEYEDKQKALREKRELESKLSTLSDQVNQRDFESEKRLRKDLKRTKALLADAQ 1677

Query: 636  AMIE 639
             M++
Sbjct: 1678 IMLD 1681


>gi|168269646|dbj|BAG09950.1| centrosomal protein 164 kDa [synthetic construct]
          Length = 1455

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 82/293 (27%), Gaps = 51/293 (17%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                      ++ I  S            E       ++           +      +L
Sbjct: 718 EQKNRQMLEQLKEEIEASEKSEQAALNAAKEKALQQLREQLEGERKEAVATLEKEHSAEL 777

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                    +RL    +    E     +   + A+ +++    + L Q      + S   
Sbjct: 778 ---------ERLCSSLEAKHREVVSSLQKKIQEAQQKEEAQLQKCLGQVEHRVHQKSYHV 828

Query: 481 SLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           +  E  L   L      ++ E  + L  ++    E Q++ +     +  ++     E+  
Sbjct: 829 AGYEHELSSLLREKRQEVEGEHERRLDKMK---EEHQQVMAKAREQYEAEERKQRAELLG 885

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L        L++L R                    +  +Q    +KR   L R+  E E
Sbjct: 886 HLTGE-----LERLQR--------------AHERELETVRQEQ--HKRLEDLRRRHREQE 924

Query: 600 KQIAQVTAKGE----------------AEKTAILISILHEVHIQIHQIESQEA 636
           +++  +    E                 E        L +V  Q+  ++S+EA
Sbjct: 925 RKLQDLELDLETRAKDVKARLALLEVQEETARREKQQLLDVQRQV-ALKSEEA 976


>gi|156741588|ref|YP_001431717.1| SMC domain-containing protein [Roseiflexus castenholzii DSM 13941]
 gi|156232916|gb|ABU57699.1| SMC domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 909

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/260 (10%), Positives = 78/260 (30%), Gaps = 34/260 (13%)

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           +      +  +LR      I  R  ++    +   +   +   +      ++   ++ ++
Sbjct: 409 REIYEVTQSARLRRRLLDEIIGRTAEMQLGQVKRITEELQRNARTILEHQERLAQRKDLE 468

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
             L +  +  + +L +   +   +     L    + L       ++ Q  W  +     E
Sbjct: 469 KRLQE--IEHQIALYQQYGITQKLQQATALARDEERLKRAHEQLSQAQADWQEVQQRLAE 526

Query: 529 QKYFLPEEI--HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                   +     +      +  + L         +    EA+    R  + + LA ++
Sbjct: 527 HWTNALAGLKQADSVQAALLQQAAEVLRGLQDAFDGYLQQGEASFQQARAEFDRLLARWE 586

Query: 587 RFR-LLSRQKEEIEKQIA-----------------------------QVTAKGEAEKTAI 616
           + R  L  + + +++++                              + T     E+   
Sbjct: 587 QERRPLDEEIQRLKRELGTQSLDPDVLIRLTQEQEALRPQWETLRKIETTTANLQEERRE 646

Query: 617 LISILHEVHIQIHQIESQEA 636
            ++ L E   Q+ Q+  Q+A
Sbjct: 647 KLADLREQRRQVFQLRQQQA 666


>gi|90962695|ref|YP_536611.1| replicative DNA helicase [Lactobacillus salivarius UCC118]
 gi|301299572|ref|ZP_07205836.1| replicative DNA helicase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90821889|gb|ABE00528.1| Replicative DNA helicase [Lactobacillus salivarius UCC118]
 gi|300852826|gb|EFK80446.1| replicative DNA helicase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 463

 Score = 42.6 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 46/162 (28%), Gaps = 11/162 (6%)

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
           ++   L  +    E A+L  +  +   L +  + +    +     Q L+  +     + +
Sbjct: 5   IMTDNLPPQNIEAEQAVLGAIFLNTDALADAMEYVEPDDFYRRAHQILFQAMVDLNNDGE 64

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 +   L        L  +      A L ++   A       GY   +   K   +
Sbjct: 65  AIDVLTVQNYLTTN---NQLDDVGGVAYIAELATSVPTA----ANAGYYAKIVEEK--SM 115

Query: 591 LSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQ 630
           L R        I Q     +            + +V  + ++
Sbjct: 116 LRRLISTATNIITQANNGDDDVPSLLDSAERQIMDVSERRNR 157


>gi|325180542|emb|CCA14948.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5053

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4194 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4253

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4254 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4313

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4314 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4366

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4367 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4424

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4425 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4484

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4485 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4524


>gi|325180535|emb|CCA14941.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5035

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4168 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4227

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4228 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4287

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4288 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4340

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4341 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4398

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4399 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4458

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4459 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4498


>gi|302836947|ref|XP_002950033.1| hypothetical protein VOLCADRAFT_90466 [Volvox carteri f.
           nagariensis]
 gi|300264506|gb|EFJ48701.1| hypothetical protein VOLCADRAFT_90466 [Volvox carteri f.
           nagariensis]
          Length = 1126

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 67/219 (30%), Gaps = 9/219 (4%)

Query: 422 YYYSQAIRDR---LQQLFQKYITEHSGYGRYWKKNAR-HRDQKGPSQRLMQSSLVKGKLS 477
               Q +  +   ++ L  +         R  +  AR        +      +       
Sbjct: 332 QQLEQQLASQSVDVEALLSRVADYQDQAARLQQHLARIGPGSSSETDGGGGGNPDGEGQQ 391

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           + PS  E  +L  +     +  +  Q  A+    + ++  +   L    V    F     
Sbjct: 392 QAPSDLETQVLELVAERDQLEGDNLQLAAENEQLHQDVSAMRDRLEEVLVTAAVFTAASD 451

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                      L  QL+ +V  A  W    EA   +V+   ++A       +  + Q E 
Sbjct: 452 RDAATAAEVARLQHQLNTEVARAEEWRTQAEAARAEVQAAQRRAEHSASVLQDFTAQAEA 511

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            + Q        EA +   L     ++  ++  + ++EA
Sbjct: 512 AQAQAEAARGALEAARVEGL-----KLRSELEAVRAREA 545


>gi|297703727|ref|XP_002828778.1| PREDICTED: protein Hook homolog 2-like isoform 1 [Pongo abelii]
          Length = 719

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 23/262 (8%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  DE  +           +   + R    + +R +++QL ++         +   +  R
Sbjct: 295 DEMDELRQSSERAGQLEATLTSCRRRLGELRELRRQVRQLEERNAGHAERTRQLEDELRR 354

Query: 456 HRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLTL---INHPAILQEQYQELADIRYD 511
               +     +  Q   ++G+  ++    E  L         + ++ +E+ + LA+    
Sbjct: 355 AGSLRAQLEAQRRQVQELQGQRQEEAMKAEKWLFECRNLEEKYESVTKEKERLLAERDSL 414

Query: 512 NNELQKLWSFLFS---DFVEQKYFLP-----EEIHQRLCERGFGELLKQLDRQVRDAGLW 563
               ++L                  P     + +   +      E L +L  + +     
Sbjct: 415 REANEELCCAQLQPRGLTQADPSLDPTSPPVDNLAAEILPAELRETLLRLQLENKRLCRQ 474

Query: 564 SATTEANIVDVRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKGEAE 612
            A       ++++  ++A                +   L  Q E+++K + +   K E  
Sbjct: 475 EAADRERQEELQRHLEEANRARHGLETQHRLNQEQLSELRAQVEDLQKALQEQGGKTEDA 534

Query: 613 KTAILISILHEVHIQIHQIESQ 634
            + +L   L E   ++H+ + +
Sbjct: 535 ISILLKRKLEEHLQKLHEADLE 556


>gi|297700056|ref|XP_002827077.1| PREDICTED: myosin-1-like isoform 1 [Pongo abelii]
          Length = 1950

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1576 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHIRIVESMQSTLDAEIRSRNDAIRLKKKMEG 1635

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1636 DLNEMEIQLNHANRMAAEALRNYRNTQAILKDTQLHLDDAL-----RSQEDLKEQ--LAM 1688

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1689 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1748

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1749 ISQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1808

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1809 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1840


>gi|189239939|ref|XP_001813596.1| PREDICTED: similar to Myosin heavy chain CG17927-PF isoform 3
            [Tribolium castaneum]
          Length = 1960

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1573 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1632

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    + +  ++  + E           A+  E 
Sbjct: 1633 NKANAEAQKTIKRYQQQLKDTQTALEEEQRARDEAREQLGISER-------RANALQNEL 1685

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE----IHQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1686 EESRTLLEQADRARRQAEQELGDAHEQLNDLSAQNSSLSAAKRKLETELQTLHSDLDELL 1745

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E QI  +  + +  +   L
Sbjct: 1746 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKDLQVRLDEAEANAL 1805

Query: 618  ---ISILHEVHIQIHQIESQ 634
                 ++ ++  ++ ++E++
Sbjct: 1806 KGGKKLIQKLEQRVRELENE 1825


>gi|157110721|ref|XP_001651219.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti]
 gi|108878633|gb|EAT42858.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti]
          Length = 1940

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 83/261 (31%), Gaps = 17/261 (6%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQKGPSQ-RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q    Q  L +    +    ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKNIKRYQQQLKDLQGALEEEQRARDDAREQLGISER-------RANALQNEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVE-----QKYFLPEEIHQRLCERGFGELLKQLDRQ 556
             +    +   +   ++    L     +      +        ++L       L   LD  
Sbjct: 1685 EESRTLLEQADRGRRQAEQELSDAHEQLNEVSGQNASIGAAKRKLESE-LQTLHSDLDEL 1743

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
            + +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +T  
Sbjct: 1744 LNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDDAETNA 1803

Query: 617  L---ISILHEVHIQIHQIESQ 634
            L      + ++  ++ +IE++
Sbjct: 1804 LKGGKKAIQKLEQRVREIETE 1824


>gi|18400735|ref|NP_565586.1| CLPB4 (CASEIN LYTIC PROTEINASE B4); ATP binding / ATPase/
           nucleoside-triphosphatase/ nucleotide binding / protein
           binding [Arabidopsis thaliana]
 gi|17979454|gb|AAL50064.1| At2g25140/F13D4.100 [Arabidopsis thaliana]
 gi|25090122|gb|AAN72234.1| At2g25140/F13D4.100 [Arabidopsis thaliana]
 gi|330252568|gb|AEC07662.1| casein lytic proteinase B4 [Arabidopsis thaliana]
          Length = 964

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 77/221 (34%), Gaps = 16/221 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI +     R +++    +     +  +++    + +L    ++ ++AL+   +   
Sbjct: 400 YRKYIEKDPALERRFQQVLCVQPSVEDTISILRGLRERYELHHGVTISDSALVSAAVLAD 459

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--------ERGFG 547
             + E++     I   +    KL   + S   E        I   +         ++   
Sbjct: 460 RYITERFLPDKAIDLVDEAGAKLKMEITSKPTELDGIDRAVIKLEMEKLSLKNDTDKASK 519

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E L++++  +               ++   +++  +L  + R    + + +  +I     
Sbjct: 520 ERLQKIENDLSTLKQKQ-------KELNVQWEKEKSLMTKIRSFKEEIDRVNLEIESAER 572

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
           + +  + A L    L  +  Q+ + E        FG+   R
Sbjct: 573 EYDLNRAAELKYGTLLSLQRQLEEAEKNLTNFRQFGQSLLR 613


>gi|328865707|gb|EGG14093.1| centrosomal protein [Dictyostelium fasciculatum]
          Length = 1094

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/305 (10%), Positives = 94/305 (30%), Gaps = 27/305 (8%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           ED    ++         +    +       + +         + + +L   L    + ++
Sbjct: 333 EDEFEQLKRSNSDKSRLVNESMISREREEVQYKKVQVENEIRETQRQLNFQLVQLKDQLR 392

Query: 417 ------------DQKLRYYYSQAIR--DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                          ++  Y QA R  + L +  +  + +   Y    +  A   +    
Sbjct: 393 RVETDKSEIESNAYDIQEAYVQAQRDNEMLVRERESLLQQIQEYEHELENRAVEPEFFSE 452

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN-------NEL 515
            ++ +++         +    E+ L+ +  N    +++    +A              +L
Sbjct: 453 LEQHVETIKQAINAKMEALNLESQLITSKENERDAMEQAKHSIAQEATSQAKAHGLLEDL 512

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
            +L   +     +      EE++Q + +       ++ + ++   G+     +    +  
Sbjct: 513 VQLHQRMLD-LEDASEKRIEEVYQHVEQ--LENEKQRAESKINMLGIEMTAVKKARDEGL 569

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVT---AKGEAEKTAILISILHEVHIQIHQIE 632
           +  + A     +   L  Q+    +++       A+   +K  +    L E+   I Q E
Sbjct: 570 EELRVAREEMYKSNNLYEQQRIEVRRLQDQEKIRAESIKDKVIMTNQELKEIESTIDQFE 629

Query: 633 SQEAM 637
             E +
Sbjct: 630 QNEKI 634


>gi|327271029|ref|XP_003220290.1| PREDICTED: WD repeat-containing protein 65-like [Anolis carolinensis]
          Length = 1250

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 60/460 (13%), Positives = 147/460 (31%), Gaps = 42/460 (9%)

Query: 217  VIAFGGRTLSKGESVKYLNSPETIL-FHKGKNLYNFF---GALNYLQKSIRKDVRRNSSS 272
            V+A  GR +  G S   + S +  L  HK  N Y       A   +    +  +      
Sbjct: 602  VVAHSGRMVFTGTSTGTIRSMKYPLPVHKEYNEYQAHAGPVAKMSITADDQFLLTSAEDG 661

Query: 273  FIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAY 332
             II+ + Y       +       S               ++   +    +          
Sbjct: 662  CIIIWKVYDKEGRGLKRERDVPYSDEVLITKTDMEEKT-QVMVELKTRVEELKMENEYQL 720

Query: 333  KAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETEN 392
            +  D+     I      FV     E   +  +       ++ +     L D++ K+  E 
Sbjct: 721  RLKDMNYNEKIKELTEKFV--QEMESLKTKNQVLKTEKEKQEVQHQEQLADLIEKQAREV 778

Query: 393  RSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452
            +   + + +  L  + K     +K Q+++  Y + + + +++   + + E + Y      
Sbjct: 779  QDLESGNNQKLLLEYEKYQELQMKSQRMQEEYEKQLHE-MEESKSQAMEELTEYYEAKLL 837

Query: 453  NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
                  ++  +    Q    +    +     +  +    I +   L+E+ +    ++ + 
Sbjct: 838  EKTTLLEESQNDVRQQLREFEETKKQIEEDEDREIQDIKIKYERRLREERESNLRLKGET 897

Query: 513  NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
              ++K ++ L  +  E +    E +  +L  +    ++K L++ +          +  I 
Sbjct: 898  GIMRKKFNSLQKEIEE-RCSDIEGL--KLEVQKLQGVIKALEKDILGLKREIQERDETIQ 954

Query: 573  DVRQGYQQALALYKRFR----LLSRQKEEIEKQI--AQVTAKGEAEKTAILISIL----- 621
            D  +         +       +L  + +E++KQI   +   K   E+   +   L     
Sbjct: 955  DKEKRIYDLKKKNQELEKFKFVLDYKIKELKKQIEPRENDIKNMKEQIEEMEGELGRFHK 1014

Query: 622  --------------------HEVHIQIHQIESQEAMIEGF 641
                                 E+H ++ +    EA+I+ F
Sbjct: 1015 QNTQLELNISELRLKLKATDREMHKEMQKERDMEALIKRF 1054


>gi|326791702|ref|YP_004309523.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM
          5427]
 gi|326542466|gb|ADZ84325.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM
          5427]
          Length = 730

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 7/55 (12%)

Query: 16 PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC--NDSKGFYYCF-SC 67
           I +L+ +     +         Y  CCP H +K PS      D +   +C   C
Sbjct: 2  RIEDLLERLEKVKKNGA----DSYICCCPAHRDKEPSLSIKETDERILLHCHAGC 52


>gi|325180547|emb|CCA14953.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5061

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4194 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4253

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4254 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4313

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4314 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4366

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4367 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4424

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4425 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4484

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4485 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4524


>gi|325180545|emb|CCA14951.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 5096

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/340 (7%), Positives = 100/340 (29%), Gaps = 27/340 (7%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   + ++           +         ++    +S  E              +     
Sbjct: 4194 ITKSELEEKQQVMMELKAKVDELTHHNDYQLRSKEISCQESLQDMKHRLSAELAQDKQRC 4253

Query: 378  S--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +        + +   +        ++ E +         IK +  R    Q   D     
Sbjct: 4254 ADIKLDQRQMEREYEKKMQEIQRQQQQERQEMEVMYEGKIKVENERLTALQQSCDLQSTN 4313

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +Q+  ++   +          R  +  +           K        +         H 
Sbjct: 4314 YQQENSQLVQHHSQVLAELTTRYDQQIALEHNVQREAHCKKQDIMRRNDQY-------HN 4366

Query: 496  AILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCE--RGFGE 548
             + ++  +E+  ++  ++    ++    + +    +   + ++   + Q + +       
Sbjct: 4367 DLDKDADKEIESMQYRFEVKMNEE--REILTRLRSENTIMKKKFTSLQQDIEDQKEEIRA 4424

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------Q 601
            + ++    +            +  ++R+  +      KR   L ++ +E+EK       +
Sbjct: 4425 IEEKSKEIMETIKALKKDVVGHQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYK 4484

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I ++T + E   ++   L   + E+ +++ Q +   + ++
Sbjct: 4485 IKELTRQIEPREQEIVELQKQIQEMDLELEQYQKSNSALD 4524


>gi|293368863|ref|ZP_06615467.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292636168|gb|EFF54656.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 54

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 13/31 (41%)

Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
                 W   PF +EK PSF  N  +  +Y
Sbjct: 24 KQQGSSLWYKSPFREEKEPSFKVNPDRNLWY 54


>gi|189239935|ref|XP_001813466.1| PREDICTED: similar to Myosin heavy chain CG17927-PF isoform 2
            [Tribolium castaneum]
          Length = 1960

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1573 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1632

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    + +  ++  + E           A+  E 
Sbjct: 1633 NKANAEAQKTIKRYQQQLKDTQTALEEEQRARDEAREQLGISER-------RANALQNEL 1685

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE----IHQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1686 EESRTLLEQADRARRQAEQELGDAHEQLNDLSAQNSSLSAAKRKLETELQTLHSDLDELL 1745

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E QI  +  + +  +   L
Sbjct: 1746 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKDLQVRLDEAEANAL 1805

Query: 618  ---ISILHEVHIQIHQIESQ 634
                 ++ ++  ++ ++E++
Sbjct: 1806 KGGKKLIQKLEQRVRELENE 1825


>gi|157310135|emb|CAJ31809.1| 101 kDa heat shock protein [Aegilops umbellulata]
          Length = 563

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 43/131 (32%), Gaps = 4/131 (3%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L     E      + I   +      +   +   + R   +    
Sbjct: 43  AIDLVDEACANVRVQLDGQPEEIDNLERKRIQLEVELHALEKEKDK-ASKARLVDVRKEL 101

Query: 567 TEANI--VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHE 623
            +       ++  Y++        R L +++EE++  + +   + +  + A L    L E
Sbjct: 102 DDLRDKLQPLQMKYRKEKERIDEIRSLKQRREELQFTLQEAERRMDLARVADLRYGALQE 161

Query: 624 VHIQIHQIESQ 634
           V   I ++E +
Sbjct: 162 VDAAIAKLEGE 172


>gi|558669|emb|CAA86293.1| Myosin [Homo sapiens]
          Length = 1937

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHTRVVETMQSTLDAEIRSRNDALRVKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1624 DLNEM-EIQLNHANRLAAESLRNYRNTQGILKETQLHLDDALRGQEDLKEQ------LAI 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELWATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828


>gi|56899886|ref|YP_173258.1| hypothetical protein pBT9727_0015 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|56800320|gb|AAW30987.1| conserved hypothetical protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 679

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 86/252 (34%), Gaps = 12/252 (4%)

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
            D  ++                 +  +        ++KLR  +   +++RLQ+L      
Sbjct: 353 QDNYYQDVNNLIDEIRLILERTYKETIMRDYQKEAEEKLRETFEANLQERLQKLNAFENK 412

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
           E+    +     +  +  +  S +L Q +  K   S    L E  L+L   +   +  + 
Sbjct: 413 ENQEMQQKLNTFSEKQQLELQSFKLKQEAEFKVYESD---LEERKLMLVSAHEEEL--KA 467

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE------RGFGELLKQLDR 555
             ++   +  + +   L        +++K  L  +    L +            LK L  
Sbjct: 468 ENDMEKEKSLHEKAYDLKLEANKLLIDKKNELLADFVGALEDIMNAASESQESQLKDLQA 527

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            + +  +     E      ++   + L L +    L ++   +E++  +      + +  
Sbjct: 528 YM-NQLIPEWREEIQAEHDKEMENRKLKLEEEKNRLEQEALILEQRKQEALEMKTSARER 586

Query: 616 ILISILHEVHIQ 627
            L++I+ E++ +
Sbjct: 587 ELLNIIDELNDR 598


>gi|56550079|ref|NP_080875.3| cingulin-like protein 1 [Mus musculus]
 gi|187951303|gb|AAI39007.1| Cingulin-like 1 [Mus musculus]
          Length = 1297

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 86/252 (34%), Gaps = 19/252 (7%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           D++ +L + +      ++ +       +  R+R+++  ++    H           R  +
Sbjct: 610 DQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLE 669

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +     R     L + K+ ++    E   L        + +   +  +  R ++ E   L
Sbjct: 670 ESEGELRKSLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSTKRSEDREKGAL 724

Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLW----SATTEAN 570
              L     + +  L  +  Q    R  ER    L   L  +V              +A 
Sbjct: 725 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 784

Query: 571 IVDVRQGYQQA------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           +  +R+  ++A      LA        S+ + ++ +++ +   +    + A L     ++
Sbjct: 785 LQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQL 844

Query: 625 HIQIHQIESQEA 636
             Q+  ++  EA
Sbjct: 845 QRQMEDVKGDEA 856



 Score = 37.9 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 39/325 (12%), Positives = 93/325 (28%), Gaps = 18/325 (5%)

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA----FEKLIV 376
            +G+          + +         R     LS   D     +           E+L+ 
Sbjct: 671 SEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQ 730

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ---KLRYYYSQAIRDRLQ 433
               L D+L  +E +       +                 DQ   KL+  Y   ++   +
Sbjct: 731 AKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRE 790

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
            + +          R         +     + L + +        +   R A L   +  
Sbjct: 791 SVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQM-- 848

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--EIHQRLCER--GFGEL 549
              +  ++ Q    +R   +E+Q+L   L     E+K        + + L +      ++
Sbjct: 849 -EDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQV 907

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            ++    +      +   E       +   +   L K    L ++  +    IA+ +   
Sbjct: 908 SQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMAD----IAEASRTS 963

Query: 610 EAEKTAILISILHEVHIQIHQIESQ 634
             E    L     +   ++ ++++Q
Sbjct: 964 SLELQKQLGEYKEKNRRELAEMQTQ 988


>gi|22094119|ref|NP_035716.1| myosin-XVIIIa [Mus musculus]
 gi|7416032|dbj|BAA93660.1| myosin containing PDZ domain [Mus musculus]
 gi|56205923|emb|CAI24425.1| myosin XVIIIa [Mus musculus]
 gi|148680948|gb|EDL12895.1| myosin XVIIIa [Mus musculus]
          Length = 2035

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 37/349 (10%), Positives = 90/349 (25%), Gaps = 31/349 (8%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   +  +  D   F +      
Sbjct: 1457 RRFDSELSQAHEETQREKLQREKLQREKDMLLAEAFSLKQQMEEKDLDIAGFTQKVVSLE 1516

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1517 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGSIQMLEQAKLRLEMEME 1576

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K  ++    E+ L   
Sbjct: 1577 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKALREKRELESKLSTL 1635

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1636 SDQVNQRDFESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQLKNQLEESEFT- 1694

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1695 ----CAAAVKARKAMEVEMEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1750

Query: 609  GE-----------------------AEKTAILISILHEVHIQIHQIESQ 634
                                       +         E+  ++  ++SQ
Sbjct: 1751 MNELMKKHKAAVAQASRDMAQMNDLQAQIEESNKEKQELQEKLQALQSQ 1799



 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1775 LQAQIEESNKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFEK 1831

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1832 TQVKRLENLASRLKETMEKLTEERDQRAAAENREKEQNKRLQRQLRDTKEEMSELARKEA 1891



 Score = 37.9 bits (86), Expect = 4.8,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 93/304 (30%), Gaps = 34/304 (11%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             +      ++  VD   KR  +        E+       +   +   D        Q ++
Sbjct: 1366 EWRLKYERAVREVDFTKKRLQQELEDKMEVEQQSRRQLERRLGDLQADSDESQRALQQLK 1425

Query: 430  DRLQQLFQK----------YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             + Q+L  +              +    +  ++      Q     +  +    K +  K 
Sbjct: 1426 KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEETQREKLQREKLQREKD 1485

Query: 480  PSLREAALLLTLINHPAI-----------LQEQYQELADIRYDNNE-LQKLWSFLFSDFV 527
              L EA  L   +    +           L+ + Q+++     +   L K+   L     
Sbjct: 1486 MLLAEAFSLKQQMEEKDLDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEA 1545

Query: 528  ----EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ------- 576
                +++    +    ++ E+    L  +++R  +       + +  + + RQ       
Sbjct: 1546 KVKDQEEELDEQAGSIQMLEQAKLRLEMEMERMRQTHSKEMESRDEEVEEARQSCQKKLK 1605

Query: 577  -GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                Q    Y+  +   R+K E+E +++ ++ +           +  ++      +   +
Sbjct: 1606 QMEVQLEEEYEDKQKALREKRELESKLSTLSDQVNQRDFESEKRLRKDLKRTKALLADAQ 1665

Query: 636  AMIE 639
             M++
Sbjct: 1666 IMLD 1669


>gi|327287537|ref|XP_003228485.1| PREDICTED: pericentrin-like [Anolis carolinensis]
          Length = 1793

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 63/150 (42%), Gaps = 18/150 (12%)

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYF-LPEEIHQRLCERGFGELLKQLDRQVR--- 558
           Q L  +  +  +L++    L      Q+ F   + + +      F E +++L+ +++   
Sbjct: 246 QNLTVMSLEVTDLRQQMQSLERQLKNQRDFMDKQAVEREHERDEFQEEIQKLEMELKLTA 305

Query: 559 --DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-------QKEEIEKQIAQVTAKG 609
              A   S   ++   ++++  +    L+     + +       Q +++E QI ++  K 
Sbjct: 306 KFQASGQSNLVDSLYSEIKEKTEDFNRLFLEKEQIQKDLDAQKDQIKKLEAQIRELELKN 365

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + E      +  +++  ++ +++  EA +E
Sbjct: 366 KEET-----NHANQLTQELQKMKKMEAELE 390


>gi|311268379|ref|XP_003132027.1| PREDICTED: myosin-10, partial [Sus scrofa]
          Length = 1861

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 761  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 820

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 821  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 880

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 881  KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 934

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +        
Sbjct: 935  RQELEKAKRKLDGETTDLQDQIAELQAQIDELKIQVAKKE---EELQGALARGDDETLHK 991

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 992  NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1039



 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 83/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ L Y   +  ++RLQQ     + +           +K  
Sbjct: 1276 EEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLLVDLDHQRQIVSNLEKKQ 1335

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1336 KKFDQLLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKDEFERQ 1390

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1391 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1450

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1451 EVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEID 1510

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1511 LKDLEAQIEA 1520


>gi|189529885|ref|XP_689920.3| PREDICTED: cingulin-like [Danio rerio]
          Length = 1182

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 77/235 (32%), Gaps = 15/235 (6%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
              +     +L +    +        K+N +  DQ+   +R +     + +        E 
Sbjct: 789  SRLSLERDELARNLEEKEKDRDTVRKENTQLDDQRRQQERALDKLNKEMERLSATHREEM 848

Query: 486  ALLLTLI--NHPAILQEQ-------YQELADIRYDNNELQKLWSFL----FSDFVEQKYF 532
             LL   +        +EQ        ++L+++    + +  L   L       F   +  
Sbjct: 849  RLLQAQLDEQRDKWRKEQQDSQKITKEKLSELDKAQSTIHSLQEELGRVKKELFSSYEER 908

Query: 533  LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                + + +       L  +++ Q       S    +    ++    +         +L+
Sbjct: 909  DNALLDKEMLTNRLKHLESEMETQRNTQNDRSREIRSLEDKIKHLELELDEEKNSAEMLT 968

Query: 593  RQKEEIEKQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQEAMIEGFGKMS 645
             +      QI Q+ A+   E++    L    + +  QI + +++ A +EG  + S
Sbjct: 969  ERITRSRDQIEQLRAELMQERSSKQDLELDKNALERQIKEYKTRVAEMEGQSRSS 1023


>gi|154342132|ref|XP_001567014.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134064343|emb|CAM42433.1| hypothetical protein, unknown function [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 810

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 80/261 (30%), Gaps = 24/261 (9%)

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
            + ++E E++              +K     I +   +    Q+  D+ +QL+     E 
Sbjct: 363 DMLRKELESKQLGFQRTLDATFAEMKEAQRQIGEAVEQCESCQSAADQYKQLYSNKQREM 422

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
                  +      +     QR M+S     +++ +    E A+        A+ +E  +
Sbjct: 423 EKVKTQLQSLLYDVNAMEQHQRSMESEYAD-RVASEREKVERAV--------ALTEEVKR 473

Query: 504 ELADIRYDNNELQ--------KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
           +   +++ N +L+             +            +            E + Q  +
Sbjct: 474 QRDHLQFLNTQLRNEVTVAVEARRQAVEQAANAGDTARRDRADYEKRIAELNEDIAQFKK 533

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALY--KRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            + D  L           V+   Q  +     ++   + R +  +E          + EK
Sbjct: 534 ALTDKDLAQGVQLREAQQVQAVLQDRMKEQVEEQQHEVERCRRALEGVKEDHKRALQQEK 593

Query: 614 TAILISILHEVHIQIHQIESQ 634
              +     E+  Q+ +IE +
Sbjct: 594 MRRV-----EIEEQLRRIEEE 609


>gi|148694283|gb|EDL26230.1| cingulin-like 1, isoform CRA_a [Mus musculus]
          Length = 1298

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 86/252 (34%), Gaps = 19/252 (7%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           D++ +L + +      ++ +       +  R+R+++  ++    H           R  +
Sbjct: 611 DQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLE 670

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +     R     L + K+ ++    E   L        + +   +  +  R ++ E   L
Sbjct: 671 ESEGELRKSLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSTKRSEDREKGAL 725

Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLW----SATTEAN 570
              L     + +  L  +  Q    R  ER    L   L  +V              +A 
Sbjct: 726 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 785

Query: 571 IVDVRQGYQQA------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           +  +R+  ++A      LA        S+ + ++ +++ +   +    + A L     ++
Sbjct: 786 LQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQL 845

Query: 625 HIQIHQIESQEA 636
             Q+  ++  EA
Sbjct: 846 QRQMEDVKGDEA 857



 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 82/229 (35%), Gaps = 19/229 (8%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + ++D+L ++  +  +      R  +K A   +     Q L    + K +       RE
Sbjct: 697 IRDLQDQLSEMHDELDSTKRSEDR--EKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRE 754

Query: 485 AALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVE-----------QKYF 532
             L          +    QE+  ++   + ELQ L   +                 ++  
Sbjct: 755 RELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQ 814

Query: 533 LPEEIHQRLCERGFGEL---LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              ++ +++ +    +L   + +L+R+           + +    ++  ++  +  ++  
Sbjct: 815 AEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLE 874

Query: 590 --LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             L+  +KEE E   A+   + E E+    +S + +   ++ +    EA
Sbjct: 875 EALVHARKEEKEATCARRALEKELEQAQRELSQVSQEQKELLEKLRDEA 923



 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 44/326 (13%), Positives = 101/326 (30%), Gaps = 20/326 (6%)

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA----FEKLIV 376
            +G+          + +         R     LS   D     +           E+L+ 
Sbjct: 672 SEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQ 731

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ---KLRYYYSQAIRDRLQ 433
               L D+L  +E +       +                 DQ   KL+  Y   ++   +
Sbjct: 732 AKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRE 791

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
            + +          R         +     + L + +        +   R A L   +  
Sbjct: 792 SVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQM-- 849

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
              +  ++ Q    +R   +E+Q+L   L     E+K        +R  E+   +  ++L
Sbjct: 850 -EDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCA---RRALEKELEQAQREL 905

Query: 554 DR--QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ---IAQVTAK 608
            +  Q +   L     EA   +  +  +  +   +    L +  E+++K+   IA+ +  
Sbjct: 906 SQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERW--HLDKTIEKLQKEMADIAEASRT 963

Query: 609 GEAEKTAILISILHEVHIQIHQIESQ 634
              E    L     +   ++ ++++Q
Sbjct: 964 SSLELQKQLGEYKEKNRRELAEMQTQ 989


>gi|88809789|ref|ZP_01125295.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit
           ClpB [Synechococcus sp. WH 7805]
 gi|88786173|gb|EAR17334.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit
           ClpB [Synechococcus sp. WH 7805]
          Length = 914

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 14/125 (11%)

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR-QGYQQ 580
           L  +   Q         Q + +      L++L+  V  A          +   R +    
Sbjct: 439 LIDEAAAQLKMDVTSKPQVVEDAEME--LRRLELSVLAAEQAPEAERVQLQRQRLEATTH 496

Query: 581 ALALYKRFRLLSRQKEEIEK----------QIAQVTAKGEAEKTAIL-ISILHEVHIQIH 629
              L +R++    Q EE+ +           IA+   +G+ E+ A L    LH +  + +
Sbjct: 497 LSRLRERWQAERGQLEELRQLLQEDEDLRHAIAEAERQGDLEEAARLQYDQLHRLQQRRN 556

Query: 630 QIESQ 634
            +E  
Sbjct: 557 DLEQS 561


>gi|23335364|ref|ZP_00120601.1| COG1186: Protein chain release factor B [Bifidobacterium longum
           DJO10A]
          Length = 240

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E I + L        +K L+ Q    GLW     A    +      A +  KR    S++
Sbjct: 18  ESIAKALDVDRLKADIKDLETQAAAPGLWDDPENA--QKITSRLSAAESQLKRLNSASQR 75

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +++E  +     +G+ +      S + E+   + Q+E Q  +++G
Sbjct: 76  IDDVETLVELGHEEGDQDSLDEAQSEIGEIQKDLDQMEIQT-LLDG 120


>gi|312877421|ref|ZP_07737385.1| chromosome segregation ATPase-like protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795810|gb|EFR12175.1| chromosome segregation ATPase-like protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 1350

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 74/212 (34%), Gaps = 4/212 (1%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y Q +  +L+   QK   E     +         ++    +    S +      +  
Sbjct: 732 RRRYRQMLISQLEDEVQKLSVELDNKKQERNAQKNLVEKLKNERDSFPSLVDLDTAFEMI 791

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             RE   L        + ++  + L+      +E+  + + L     +  +    +  Q+
Sbjct: 792 EERENQKLKLQKEIEFLEKKTRELLSKENSLKHEISVIATKLSVTAAKDNFLKLAQEAQK 851

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKEE 597
           L      +L  +++++   +   ++  E        ++       +L  R+  LS +K E
Sbjct: 852 LKS-VLVDLENEVEKEKLVSRTVTSKREQTLQIEESLQNLSFDLQSLKTRWESLSLKKAE 910

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           IEK+++    +   E+    I  L  +  +I 
Sbjct: 911 IEKRLSSDDTQKLFEEQQKAIERLDSIPKEIE 942


>gi|237745523|ref|ZP_04576003.1| chromosome segregation protein [Oxalobacter formigenes HOxBLS]
 gi|229376874|gb|EEO26965.1| chromosome segregation protein [Oxalobacter formigenes HOxBLS]
          Length = 1170

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 6/125 (4%)

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           +    +        E   R         L +L+   R+  +     E  + ++ +   + 
Sbjct: 711 IHDIRLSILKAEEAERLYREQTTRVENDLNELEEARREKEVALCEEEKRLEEMDRLLGEW 770

Query: 582 LALYKRFRLL----SRQKEEIEKQIAQVTAKGEAE--KTAILISILHEVHIQIHQIESQE 635
               + FR +      + +   +++ Q   K E    +   L+  L E+  QI   E Q 
Sbjct: 771 QQKEEDFRDVTVGEEEKLKIFREELRQAERKVEQAAFEKESLMKRLAELERQIETAEKQI 830

Query: 636 AMIEG 640
           A + G
Sbjct: 831 ATVSG 835



 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 15/205 (7%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + F     E     +  K+    R       + +++ L +     +    +A  +   I+
Sbjct: 653 EGFFSRQQEIERLEQLQKRRQTERSAALAQLKQVETELNEVHAQLQEWRNQAGSMTHRIH 712

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
              I     +     R    +  ++ + L      ++        +         LL + 
Sbjct: 713 --DIRLSILKAEEAERLYREQTTRVENDLNELEEARREKEVALCEEEKRLEEMDRLLGEW 770

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALA-----------LYKRFRLLSRQKEEIEKQI 602
            ++  D    +   E  +   R+  +QA             L KR   L RQ E  EKQI
Sbjct: 771 QQKEEDFRDVTVGEEEKLKIFREELRQAERKVEQAAFEKESLMKRLAELERQIETAEKQI 830

Query: 603 AQVTAKGEAEKTAILISILHEVHIQ 627
              T  G  ++  + +  L +   Q
Sbjct: 831 --ATVSGNLDQGQLELQELDDKAAQ 853


>gi|148666064|gb|EDK98480.1| Rho-associated coiled-coil containing protein kinase 2 [Mus musculus]
          Length = 1384

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 101/288 (35%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 818  MSEKQIKQENNHLMEMKMNLEKQNTELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 877

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   +                 K  S++L +S   +    L K
Sbjct: 878  ELKEENEEKTKLCKELQQKKQDLQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 937

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 938  EKIMKELEIKEMMARHKQELTEKDTTIASLE---ETNRTLTSDVANLANE-----KEELN 989

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  +++ R    QA+     +  R   + R 
Sbjct: 990  NKLKDS--QEQLSKLKDEEMSAAAIKAQFEKQLLNERTLKTQAVNKLAEIMNRKEPVKRG 1047

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1048 SDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1092


>gi|118081858|ref|XP_424476.2| PREDICTED: similar to golgi antigen gcp372 [Gallus gallus]
          Length = 2701

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 79/252 (31%), Gaps = 31/252 (12%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            ++++++     A+ +R + L +    E+       +  +     +        +S V   
Sbjct: 930  ENEQVKRKLQAALVNRKELLRKVSKLENKLVQLKMEPESGTSMAQEAEGEEHMTSGVSQG 989

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            ++ + S RE  L+  L    + L   ++EL D      +LQ +   +      +      
Sbjct: 990  VNLESSPREEYLIQLLSEKESELLSIWKELLDKEATEAQLQAVIEEMKQSLQGRTDIDS- 1048

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                ++   G   +  +L              E N         Q  AL +R   L ++K
Sbjct: 1049 ---NKVEIMGSQTIADKLTETNEGPKGDEEYEENNAAATNLEENQMSALKERISTLEQEK 1105

Query: 596  EEIEKQIAQV-----------------------TAKGEAEKTAILI----SILHEVHIQI 628
            E+++K++ +                          K +                 +  Q+
Sbjct: 1106 EQLQKKLQEALVSRKDTIKKAQEKDRHHREQLKQQKDDYNTLQEQFDMQMKEKESIQAQL 1165

Query: 629  HQIESQEAMIEG 640
             Q++ Q    EG
Sbjct: 1166 RQLQEQRGSTEG 1177



 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 76/242 (31%), Gaps = 9/242 (3%)

Query: 404  LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
                  N +  IKD + +      +  R+Q L ++     +      +     + +    
Sbjct: 1962 RYREDLNQVISIKDSQQKQLLKTQL-QRIQALEKEKAVMETQLKESERTQDDLKKRMEAL 2020

Query: 464  QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW---S 520
            +    S   + +       R  + +  L     I++ Q Q  A         +KL     
Sbjct: 2021 REDKVSMSQEVETLTSSLSRAQSEMTALAEGSPIMECQAQLKAREEEAQELHRKLALSQQ 2080

Query: 521  FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
             +     E +    ++   R        L K+L     DAG+    TE     V +  + 
Sbjct: 2081 RITEL--EGELVSVQKDATRRVGEAEDRLRKELKHLHHDAGIMRNETETAEERVAELARD 2138

Query: 581  ALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQ-IESQEAM 637
             + + ++   ++ + +++  QI           +        L  +  +    +E Q+ +
Sbjct: 2139 LMEMEQKLLAVTDENKDLRAQIQSFGKSMSSLQDSWDQTNEELQSLKQKYSADLEEQQNL 2198

Query: 638  IE 639
             E
Sbjct: 2199 AE 2200


>gi|146301164|ref|YP_001195755.1| ATPase [Flavobacterium johnsoniae UW101]
 gi|146155582|gb|ABQ06436.1| ATPase AAA-2 domain protein [Flavobacterium johnsoniae UW101]
          Length = 867

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 75/212 (35%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++K          +  +++    K +   K  +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQKVLIDEPDTESAISILRGIKEKYETHHKVQIKDEAIIAAVELSQ 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             +  ++     I   +    KL   + S   E      + +   +         ++ + 
Sbjct: 377 RYITNRFLPDKAIDLMDEAASKLRMEINSKPEELDVLDRKIMQLEIEIEAIKR--EKEES 434

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           +++  G+  A  +    ++   ++Q   +    + +  + E+ + +  +    G+  K A
Sbjct: 435 KLKILGMELANLKEERNEIYAKWKQEKDIVDGIQAVKHEIEDFKYEAERAERDGDYGKVA 494

Query: 616 IL--------ISILHEVHIQIHQIESQEAMIE 639
            +              +  Q+ + +S  ++I+
Sbjct: 495 EIRYGKIKEAQERQENLQKQLLEFQSGNSLIK 526


>gi|3599509|gb|AAC72823.1| rho/rac-interacting citron kinase [Mus musculus]
          Length = 2055

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 95/298 (31%), Gaps = 38/298 (12%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
             +   +   EKL         +  K        ++ + + +    ++   N +KD    
Sbjct: 663 QAKERAERELEKLHNREDSSEGIKKKLVEAEERRHSLENKVKRLETMERRENRLKDDIQT 722

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+               +         +++ + + K    K+ 
Sbjct: 723 KSEQIQQMADKILELEEKHREAQVSAQHLEVHLKQKEQHYEEKIKVLDNQIKKDLADKE- 781

Query: 481 SLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                +L   +  H     E+ + L++    I   +++++ L   +       K      
Sbjct: 782 -----SLENMMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANSS 836

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALALY 585
           +  +   +   E++ +L +Q       +   EA    + +  +           + L L 
Sbjct: 837 LFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKSRLLELE 896

Query: 586 KRFRL-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            R R            L RQ  E++  + +  +     +   L +    +  Q+ Q +
Sbjct: 897 TRLREVSLEHEEQKLELKRQLTELQLSLQERES-----QLTALQAARAALESQLRQAK 949


>gi|7020693|dbj|BAA91236.1| unnamed protein product [Homo sapiens]
          Length = 506

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 291 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 350

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 351 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGLRLARRLQELERDKNLMLAT 410


>gi|441286|emb|CAA30259.1| unnamed protein product [Drosophila melanogaster]
          Length = 622

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 77/226 (34%), Gaps = 27/226 (11%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + + L +  ++       +    K   +    +   +  +QS   +     +   +E
Sbjct: 178 RKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQE 237

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS---DFVEQKYFLPEEIHQRL 541
                  IN    +++      D R  +    KL   L      + EQ     +EI   +
Sbjct: 238 -------INESRRIKQTEYSEIDGRLSSEYDAKLKQSLQDVRAQYEEQMQINRDEIQSLI 290

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-------Q 594
            ++        + R    A   S +T  +I ++R    +  AL      L +       +
Sbjct: 291 EDK--------IQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNAR 342

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIESQEAMIE 639
             ++E+Q+     +   E   +L   L  +  ++  Q++  + +++
Sbjct: 343 IRDLERQLDNDRERHGQE-IDLLEKELIRLREEMTQQLKEYQDLMD 387


>gi|317012106|gb|ADU82714.1| ATP-dependent protease binding subunit [Helicobacter pylori
           Lithuania75]
          Length = 856

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 92/280 (32%), Gaps = 26/280 (9%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R   K   + L+ + +  +D+              +   ++   +K   N I        
Sbjct: 220 RIVNKEVPKTLLNKRVIALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVI-------L 272

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +              + +  +    K          
Sbjct: 273 FIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYFEKD------MAL 326

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLW---SFLFSDFVEQKYFLPEEIHQR 540
           +      L+N P+ + E  Q L  ++        +    S L +       ++ +     
Sbjct: 327 QRRFQPILLNEPS-INEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPD 385

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL------YKRFRLLSRQ 594
                  E   QL  Q+       ++ + +I  + +  +QAL +      +KR + + ++
Sbjct: 386 KAIDLIDEGAAQLKMQMESEPAKLSSVKRSIQRL-EMEKQALEMEKKESNHKRMQEILKE 444

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             +++++  Q+ A+ E EK   +   +  + +++  ++ +
Sbjct: 445 LSDLKEEKIQLEAQFENEK--EVFKEISRLKMEMESLKKE 482


>gi|311251149|ref|XP_003124472.1| PREDICTED: CAP-Gly domain-containing linker protein 2-like [Sus
           scrofa]
          Length = 956

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 81/281 (28%), Gaps = 14/281 (4%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +  I         +L    +  ++     E         +        +      ++ ++
Sbjct: 486 EESITKGDLETQTQLEHARIGELEQNLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEE 545

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                   I++  Q L                   R R      +   +S L++ K  K 
Sbjct: 546 ELSLRRGEIKELQQCLLHSGPPPADHPEAAETLRLRERLLSASKEHQRESGLLRDKYEKA 605

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEE 536
               +A +      +    QE     A ++   +E   L                   E+
Sbjct: 606 LRAYQAEVEKLRAANEKYAQEVVDLKAKVQQATSENMGLMDNWKSKLDSLASDHQKSLED 665

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQK 595
           +   L   G G   K++              +  + ++R  +    A++ + +  L ++ 
Sbjct: 666 LKATLNS-GPGAQQKEIGELKAVMEGIKMEHQLELGNLRAKHDIETAMHVKEKEGLRQKL 724

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           +E ++++A +                 EV    H++E QEA
Sbjct: 725 QEAQEELAGL---------QQHWRAQLEVQASQHRLELQEA 756


>gi|310792425|gb|EFQ27952.1| hypothetical protein GLRG_03096 [Glomerella graminicola M1.001]
          Length = 691

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/306 (8%), Positives = 76/306 (24%), Gaps = 36/306 (11%)

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDP-DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR 393
           IDL   H   G           +D      +        K   +      +    + +  
Sbjct: 193 IDLNEPHSRSGKYWKSEFEQYHQDAKAEMEKLLKYKQLAKSYAKMKDAEAIDLNAKLKEE 252

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRY--YYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
                     +        +     + R      + +  +     +              
Sbjct: 253 QEKVAQMEKRISEMAAQIASKRASGEERDNPQLMKDLAKQTAVAVEYKTQVKELEALLGN 312

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-AALLLTLINHPAILQEQYQELADIRY 510
           ++    +    S+R  Q++  +   +   + RE       +  +  + +E  +  +D+ +
Sbjct: 313 RDGDEDEGDARSRRRRQAASPRTHKALLETQRELRKARAQIKENGQLREEVERLKSDLLF 372

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
                 KL         +Q     E        +   EL ++  ++  +     +  EA 
Sbjct: 373 AEQRANKLAEENKRLAEQQPSQNKETTT---SSKEVEELKEEARQKDEELRKLKSDFEAY 429

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             D     +    + ++                                 ++E+  +I  
Sbjct: 430 RTDAEATQEDTRHILEKATD-----------------------------KINELKREIKA 460

Query: 631 IESQEA 636
           +++  A
Sbjct: 461 LKAGSA 466


>gi|309701040|emb|CBJ00338.1| putative phage tail length tape measure protein [Escherichia coli
           ETEC H10407]
          Length = 1077

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 5/122 (4%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L + L +   +           ++    F    +++    R+    +           + 
Sbjct: 146 LAAALRNLEQQHDELNAAFASGKINGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQ 205

Query: 578 YQQALALYKRFRLLS---RQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIE 632
                 L  +   +     +  E +KQ+ +  AKG    E    L   L  +  ++   +
Sbjct: 206 VVALQRLIAQLDPVGTAFNRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEVTQ 265

Query: 633 SQ 634
           SQ
Sbjct: 266 SQ 267


>gi|297466459|ref|XP_002704510.1| PREDICTED: EF-hand calcium binding domain 4B [Bos taurus]
          Length = 723

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 2/148 (1%)

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             L N    L   + +L +     +EL+       + + E+   L EE+ Q++       
Sbjct: 188 HLLSNFEDFLTRIFSQLLEAHEXEDELECALKKKIAAYDEEIQHLYEEMEQQIKTEKEQF 247

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE--IEKQIAQVT 606
           LLK  +R    +        +   ++ Q  Q+   L  +   L   K E   E    ++T
Sbjct: 248 LLKDTERFRARSQELERKLLSKEQELEQLVQKQKRLEGQCTALHNDKHETKAENTKLRLT 307

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
            +  A +       L +   Q+  +  +
Sbjct: 308 NQELARELERTSRELQDAQQQLESLRQE 335



 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 54/145 (37%), Gaps = 9/145 (6%)

Query: 503 QELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERG------FGELLKQLDR 555
           ++L D+  D     Q L   L +  V +     +++  +L +        F + L ++  
Sbjct: 143 EDLGDMDEDEEAQFQTLMDRLGAQKVLEDEADVKQLWLQLKKDEPHLLSNFEDFLTRIFS 202

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           Q+ +A       E  +      Y + +     +  + +Q +  ++Q      +    ++ 
Sbjct: 203 QLLEAHEXEDELECALKKKIAAYDEEIQHL--YEEMEQQIKTEKEQFLLKDTERFRARSQ 260

Query: 616 ILISILHEVHIQIHQIESQEAMIEG 640
            L   L     ++ Q+  ++  +EG
Sbjct: 261 ELERKLLSKEQELEQLVQKQKRLEG 285


>gi|297486814|ref|XP_002695851.1| PREDICTED: myosin, heavy chain 8, skeletal muscle, perinatal [Bos
            taurus]
 gi|296476616|gb|DAA18731.1| myosin, heavy chain 8, skeletal muscle, perinatal [Bos taurus]
          Length = 1937

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEVDRKIAEKDEEIEQLKRNHIRVVETMQSTLDAEIRSRNDALRVKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1624 DLNEM-EIQLNHANRLAAESLRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAI 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828


>gi|89108216|ref|AP_001996.1| predicted tail protein [Escherichia coli str. K-12 substr. W3110]
 gi|170081047|ref|YP_001730367.1| Rac prophage; tail protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|14195556|sp|P77658|YNAA_ECOLI RecName: Full=Putative uncharacterized protein ynaA
 gi|1742228|dbj|BAA14961.1| predicted tail protein [Escherichia coli str. K12 substr. W3110]
 gi|169888882|gb|ACB02589.1| Rac prophage; predicted tail protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|260449501|gb|ACX39923.1| putative phage tail protein [Escherichia coli DH1]
 gi|315136009|dbj|BAJ43168.1| predicted tail protein [Escherichia coli DH1]
          Length = 342

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 5/122 (4%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L + L +   +           ++    F    +++    R+    +           + 
Sbjct: 146 LAAALRNLEQQHDELNAAFASGKINGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQ 205

Query: 578 YQQALALYKRFRLLS---RQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIE 632
                 L  +   +     +  E +KQ+ +  AKG    E    L   L  +  ++   +
Sbjct: 206 VVALQRLIAQLDPVGTAFNRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEVTQ 265

Query: 633 SQ 634
           SQ
Sbjct: 266 SQ 267


>gi|256398034|ref|YP_003119598.1| DnaB domain-containing protein helicase domain-containing protein
           [Catenulispora acidiphila DSM 44928]
 gi|256364260|gb|ACU77757.1| DnaB domain protein helicase domain protein [Catenulispora
           acidiphila DSM 44928]
          Length = 345

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           RE  +L  LI HP ++ E    L    + +   ++++  +       +  
Sbjct: 173 RERTILSDLIQHPELIPEV-HWLDPEVFTSPSNRQIYETILIVDDRGEPV 221


>gi|239616666|ref|YP_002939988.1| SMC domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505497|gb|ACR78984.1| SMC domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 534

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/275 (10%), Positives = 90/275 (32%), Gaps = 25/275 (9%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
              + E  S ++  +  +   H     N I+D+ L   Y++   + ++   +    E   
Sbjct: 115 LSDQIEIHSQHSSVKLLDSSKHHLILDNMIRDRSLLKEYAEKYNEFVKVKKELGTFEVDP 174

Query: 446 YGRYWKKNA---RHRDQKGPSQRLMQSSLVKGKLSKKPSLRE----AALLLTLINHPA-- 496
                +K+    + ++      +  +   ++ K  K    +E      LL+  +      
Sbjct: 175 GSIAREKDFLEFQLKEIVDAKLQPGEDIEIERKYKKYTDAQELKKTFTLLMETLKDMDNS 234

Query: 497 ---ILQEQYQELADI------RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              IL     +L  +       +   E  ++         +              +  F 
Sbjct: 235 AYAILSNILHDLEALEKYGYKDFS--EHARVAIEEIDYLYDMLVAELPNF--EFDDEEFS 290

Query: 548 ELLKQ---LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
           ++  +   +    R  G            +    ++   L  +   L  +++E+ +++ +
Sbjct: 291 QVEARFSLIQNLKRKYGQTVEEIIETGEKIANRLKELTNLEAKKERLVEREKELYQELIR 350

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +  + + E+  +   I  ++   +  ++ + A+++
Sbjct: 351 LGKEIDKERLEVARIIKEKIQKHLDDLKMKGAIVD 385


>gi|260809791|ref|XP_002599688.1| hypothetical protein BRAFLDRAFT_70365 [Branchiostoma floridae]
 gi|229284969|gb|EEN55700.1| hypothetical protein BRAFLDRAFT_70365 [Branchiostoma floridae]
          Length = 422

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 69/196 (35%), Gaps = 19/196 (9%)

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY--- 510
           A  +     +       +   +   K    +  L+   +    + +E  Q   ++++   
Sbjct: 68  ATKKRSPIKALNNSPVVIDDFRAKVKIHQLQTELMKKKMECDYLREEAKQLTDELKFERF 127

Query: 511 -----DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
                 N  +  L         E +    +E+          + L +LD+ + +      
Sbjct: 128 MLKKKTNEAIGTLQEKNKEMTKENQDLRKKEL-------EAKKTLGELDKSMGNTKAMLK 180

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQK--EEIEKQIAQVTAKGEAEKTAILISILHE 623
             E  +  V +   +A+A  +  R ++R+   E+ E ++A+V A   A +   +     E
Sbjct: 181 EAEDKMDTVEKEKIRAMADLEELRSVNRRLLVEKREAKVAEVEASHRASEAERVAEE--E 238

Query: 624 VHIQIHQIESQEAMIE 639
           +  +    + QE ++E
Sbjct: 239 LKKRQEAEKKQEELLE 254


>gi|168041373|ref|XP_001773166.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675525|gb|EDQ62019.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 498

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 75/196 (38%), Gaps = 13/196 (6%)

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
           +    Q    + L+ + + + +++ +    E +L   L     I+++Q +++ D++  + 
Sbjct: 243 SGTGQQARELKELISAQITQLQMAVEKMGNEFSLRQVLEEKDKIIEDQKKKIGDLQRASV 302

Query: 514 ELQKLWSFLFSDFVE-----QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
                +S L   F E      K     +I   L ++   EL  Q  ++        A   
Sbjct: 303 TDALKYSRLEHQFKETQAKWAKENKLAKILMELTKQECMELWNQYQKEKNRVAKLEARRS 362

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-----AQVTAKGEAEKTAILISILHE 623
               +    ++Q  +   +   L R+  E+E ++      Q      +     L   +H 
Sbjct: 363 KLEDNF---WRQLESSKTKNEQLKRRIAELEAEMITVTTQQGEVNPASTSLWELEKQVHA 419

Query: 624 VHIQIHQIESQEAMIE 639
           +  Q+ + ++Q A++E
Sbjct: 420 LEEQLKERDTQIALLE 435


>gi|225457237|ref|XP_002284179.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 911

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + +   +              + + +      
Sbjct: 392 AIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALE------KEKDKASKARLVE 445

Query: 567 TEANIVDVRQGYQQALALYKR-------FRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
               + D+R   Q  +  YK+        R L +++EE+   + +   + +  + A L  
Sbjct: 446 VRRELDDLRDKLQPLMMKYKKEKERIDELRRLKQKREELLFALQEAERRYDLARAADLRY 505

Query: 619 SILHEVHIQIHQIESQ 634
             + EV   I  +E  
Sbjct: 506 GAIQEVEAAIANLEGT 521


>gi|270006717|gb|EFA03165.1| hypothetical protein TcasGA2_TC013085 [Tribolium castaneum]
          Length = 1382

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 85/269 (31%), Gaps = 10/269 (3%)

Query: 379  LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-----YYYSQAIRDRLQ 433
                +    +           +  ++       I  ++D+  R        SQ   +  +
Sbjct: 866  KEKQEREIVQRLTVDHELEISDFRKIAQSKNEEIKGLRDENARLSSELRKVSQENLELKE 925

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
             L               K+      +K  S +     L     S+  ++R    L+T+  
Sbjct: 926  GLEAMSCKSSKEMDDMKKRMDEVLAEKERSTKEEIERLKSEYKSEMENIRARFKLMTMER 985

Query: 494  HPAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
             P+  +   +++    Y +    + L   +  +F  +K     +   +  +R    L  +
Sbjct: 986  SPS--ENSLEKIERGDYPSITNHEALLLQMTENFESEKEVAVSDAVSKESQRWQKILDDR 1043

Query: 553  LDRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            + +   D     A    NI     +   +Q   L ++   L+ +  + +  I Q+    E
Sbjct: 1044 IKQMECDFEQEKAFLIQNIQSRIQQDQEKQINQLREQINNLNLECIKYKDTIQQLAEYRE 1103

Query: 611  AEKTAILISILHEVHIQIHQIESQEAMIE 639
                  L+  +  +  +   ++++   I+
Sbjct: 1104 ESDCNELMRRIDSLEREKTALKNELKRIK 1132


>gi|134949013|ref|NP_033098.2| rho-associated protein kinase 2 [Mus musculus]
 gi|162318406|gb|AAI57054.1| Rho-associated coiled-coil containing protein kinase 2 [synthetic
            construct]
 gi|162318480|gb|AAI56154.1| Rho-associated coiled-coil containing protein kinase 2 [synthetic
            construct]
          Length = 1388

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 101/288 (35%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 822  MSEKQIKQENNHLMEMKMNLEKQNTELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 881

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   +                 K  S++L +S   +    L K
Sbjct: 882  ELKEENEEKTKLCKELQQKKQDLQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 941

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 942  EKIMKELEIKEMMARHKQELTEKDTTIASLE---ETNRTLTSDVANLANE-----KEELN 993

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  +++ R    QA+     +  R   + R 
Sbjct: 994  NKLKDS--QEQLSKLKDEEMSAAAIKAQFEKQLLNERTLKTQAVNKLAEIMNRKEPVKRG 1051

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1052 SDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1096


>gi|126322956|ref|XP_001364270.1| PREDICTED: similar to plectin 11 isoform 2 [Monodelphis domestica]
          Length = 4553

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 89/275 (32%), Gaps = 14/275 (5%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI---KD 417
               +       ++L  E    +    + E E        E            N +   KD
Sbjct: 2200 DHQKDILDEELQRLKEEVTDAMRQKTQVEEELFKVKIQMEELVKLKARIEEENKMLILKD 2259

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +     +     ++++Q+ ++            +      +     + L +  L +   +
Sbjct: 2260 KDNTQKFLVEEAEKMKQVAEEAARLSVEAQEAARLRKLAEEDLAQQRALAEKMLKEKMQA 2319

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             + + R  A    L     + QE  ++L + +  +   Q+L         E + F     
Sbjct: 2320 VQEATRLKAEAEMLQKQKDLAQEHAKKLQEDK--DQMEQRLAQ-------ETEGFQKTLE 2370

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             +R  +       ++L   V +  L  A  E +    ++  ++      R  L +R+K  
Sbjct: 2371 AERRRQLEMSAEAERLKLHVTEMSLAQAKAEEDARKFKKQAEEIGEKLHRTELATREKMT 2430

Query: 598  I--EKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            +    +I +  +  +A+K    I+ L     ++ +
Sbjct: 2431 LVHTLEIQRQQSDKDADKLKDAIAELEREKEKLKR 2465



 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 66/232 (28%), Gaps = 40/232 (17%)

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
             E     R   + A  R ++     + +      +  ++ +  E  L    +        
Sbjct: 2143 AELEAAKRAQAEQAALRQKQAADAEMEKHKKFAEQTLRQKAQVEQELTKVKLQ------- 2195

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ---- 556
              +        + ELQ+L   +     ++     E    ++      +L  +++ +    
Sbjct: 2196 LEETDHQKDILDEELQRLKEEVTDAMRQKTQVEEELFKVKIQMEELVKLKARIEEENKML 2255

Query: 557  -------------VRDAGLWSATTEANIVDVRQGYQQALA------LYKRFRLLSRQKEE 597
                              +     EA  + V       L       L ++  L  +  +E
Sbjct: 2256 ILKDKDNTQKFLVEEAEKMKQVAEEAARLSVEAQEAARLRKLAEEDLAQQRALAEKMLKE 2315

Query: 598  IEKQIAQVTA--------KGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
              + + + T         + + +        L E   Q+ Q  +QE   EGF
Sbjct: 2316 KMQAVQEATRLKAEAEMLQKQKDLAQEHAKKLQEDKDQMEQRLAQET--EGF 2365


>gi|119619467|gb|EAW99061.1| dystrophin (muscular dystrophy, Duchenne and Becker types), isoform
            CRA_a [Homo sapiens]
          Length = 3681

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 52/450 (11%), Positives = 127/450 (28%), Gaps = 34/450 (7%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 2525 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 2580

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 2581 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 2640

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2641 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 2699

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 2700 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 2759

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2760 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 2819

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2820 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGL- 2877

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                       L+    E    +  Q   +   L K+   ++ + E++   +     + +
Sbjct: 2878 ---------EKLYQEPRELPPEERAQNVTRL--LRKQAEEVNTEWEKLN--LHSADWQRK 2924

Query: 611  AEKTAILISILHEVHIQIHQIESQEAMIEG 640
             ++T   +  L E   ++     Q  +I+G
Sbjct: 2925 IDETLERLRELQEATDELDLKLRQAEVIKG 2954



 Score = 41.8 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L +  +K   +     +  K        K  S R   ++L+  +      L E  +   
Sbjct: 1697 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 1756

Query: 491  -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                  I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 1757 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 1816

Query: 546  ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                 ELL++ D   +         E  I                        +   Q  
Sbjct: 1817 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 1876

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1877 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 1928


>gi|47214304|emb|CAG00970.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 987

 Score = 42.6 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 91/284 (32%), Gaps = 35/284 (12%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----RY 422
            K  + + + + L +   +  +E  N      ++        ++  N ++D +     + 
Sbjct: 572 NKKDYIEELTKQLDVSQKIEVKEARNVMVEANNQEYAFNYLQQSLNNKLQDAEETLDKQT 631

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+Q + ++L  + ++   E     +  K+           +   +    +  L ++  L
Sbjct: 632 QYTQTLSEKLWLVERQL--EELQIDKDTKEKKSSELNSTILRLETELIDKEQTLEEEIQL 689

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           RE       +      +       ++   N    +L   +     ++K    E   + L 
Sbjct: 690 RER----IQLQCKQAERMVEDLKMELHTTNQAKDELAKQI--KTAQEKMLDMESDLEELH 743

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQK 595
           +                   W+A  +  I    Q   + +        L      L RQ 
Sbjct: 744 DSEQR---------------WAAKHKRAIEQTEQLQMKLIQEKDLNDHLEIEKATLERQL 788

Query: 596 EEIEKQIAQV-TAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            E+  ++  +  +K + E  +   S + E+   +   E  +A++
Sbjct: 789 RELRLEVEDLHNSKVQEEVISRSESRVKELENTLRVEERNKAIL 832


>gi|331677186|ref|ZP_08377882.1| putative alpha helix protein [Escherichia coli H591]
 gi|331075875|gb|EGI47173.1| putative alpha helix protein [Escherichia coli H591]
          Length = 1077

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 5/122 (4%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L + L +   +           ++    F    +++    R+    +           + 
Sbjct: 146 LAAALRNLEQQHDELNAAFASGKINGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQ 205

Query: 578 YQQALALYKRFRLLS---RQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIE 632
                 L  +   +     +  E +KQ+ +  AKG    E    L   L  +  ++   +
Sbjct: 206 VVALQRLIAQLDPVGTAFNRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEVTQ 265

Query: 633 SQ 634
           SQ
Sbjct: 266 SQ 267


>gi|331662809|ref|ZP_08363732.1| putative alpha helix protein [Escherichia coli TA143]
 gi|331061231|gb|EGI33195.1| putative alpha helix protein [Escherichia coli TA143]
          Length = 1077

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 5/122 (4%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L + L +   +           ++    F    +++    R+    +           + 
Sbjct: 146 LAAALRNLEQQHDELNAAFASGKINGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQ 205

Query: 578 YQQALALYKRFRLLS---RQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIE 632
                 L  +   +     +  E +KQ+ +  AKG    E    L   L  +  ++   +
Sbjct: 206 VVALQRLIAQLDPVGTAFNRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEVTQ 265

Query: 633 SQ 634
           SQ
Sbjct: 266 SQ 267


>gi|209918639|ref|YP_002292723.1| putative phage tail protein [Escherichia coli SE11]
 gi|209911898|dbj|BAG76972.1| putative phage tail protein [Escherichia coli SE11]
 gi|323937717|gb|EGB33985.1| prophage tail length tape measure protein [Escherichia coli E1520]
          Length = 1077

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 5/122 (4%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L + L +   +           ++    F    +++    R+    +           + 
Sbjct: 146 LAAALRNLEQQHDELNAAFASGKINGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQ 205

Query: 578 YQQALALYKRFRLLS---RQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIE 632
                 L  +   +     +  E +KQ+ +  AKG    E    L   L  +  ++   +
Sbjct: 206 VVALQRLIAQLDPVGTAFNRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEVTQ 265

Query: 633 SQ 634
           SQ
Sbjct: 266 SQ 267


>gi|125987842|sp|Q9JMH9|MY18A_MOUSE RecName: Full=Myosin-XVIIIa; AltName: Full=Molecule associated with
            JAK3 N-terminus; Short=MAJN; AltName: Full=Myosin
            containing a PDZ domain
 gi|56205924|emb|CAI24426.1| myosin XVIIIa [Mus musculus]
          Length = 2050

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/349 (10%), Positives = 90/349 (25%), Gaps = 31/349 (8%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   +  +  D   F +      
Sbjct: 1457 RRFDSELSQAHEETQREKLQREKLQREKDMLLAEAFSLKQQMEEKDLDIAGFTQKVVSLE 1516

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1517 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGSIQMLEQAKLRLEMEME 1576

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K  ++    E+ L   
Sbjct: 1577 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKALREKRELESKLSTL 1635

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1636 SDQVNQRDFESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQLKNQLEESEFT- 1694

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1695 ----CAAAVKARKAMEVEMEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1750

Query: 609  GE-----------------------AEKTAILISILHEVHIQIHQIESQ 634
                                       +         E+  ++  ++SQ
Sbjct: 1751 MNELMKKHKAAVAQASRDMAQMNDLQAQIEESNKEKQELQEKLQALQSQ 1799



 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1775 LQAQIEESNKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFEK 1831

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1832 TQVKRLENLASRLKETMEKLTEERDQRAAAENREKEQNKRLQRQLRDTKEEMSELARKEA 1891



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 93/304 (30%), Gaps = 34/304 (11%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             +      ++  VD   KR  +        E+       +   +   D        Q ++
Sbjct: 1366 EWRLKYERAVREVDFTKKRLQQELEDKMEVEQQSRRQLERRLGDLQADSDESQRALQQLK 1425

Query: 430  DRLQQLFQK----------YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             + Q+L  +              +    +  ++      Q     +  +    K +  K 
Sbjct: 1426 KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEETQREKLQREKLQREKD 1485

Query: 480  PSLREAALLLTLINHPAI-----------LQEQYQELADIRYDNNE-LQKLWSFLFSDFV 527
              L EA  L   +    +           L+ + Q+++     +   L K+   L     
Sbjct: 1486 MLLAEAFSLKQQMEEKDLDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEA 1545

Query: 528  ----EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ------- 576
                +++    +    ++ E+    L  +++R  +       + +  + + RQ       
Sbjct: 1546 KVKDQEEELDEQAGSIQMLEQAKLRLEMEMERMRQTHSKEMESRDEEVEEARQSCQKKLK 1605

Query: 577  -GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                Q    Y+  +   R+K E+E +++ ++ +           +  ++      +   +
Sbjct: 1606 QMEVQLEEEYEDKQKALREKRELESKLSTLSDQVNQRDFESEKRLRKDLKRTKALLADAQ 1665

Query: 636  AMIE 639
             M++
Sbjct: 1666 IMLD 1669


>gi|74188812|dbj|BAE39186.1| unnamed protein product [Mus musculus]
          Length = 727

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    +R A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIRPAHILQEKEEQHQLAVNAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|301624111|ref|XP_002941352.1| PREDICTED: LOW QUALITY PROTEIN: centriolin [Xenopus (Silurana)
           tropicalis]
          Length = 2282

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 79/234 (33%), Gaps = 18/234 (7%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQ------KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +  +    Q +  ++Q L Q      +   +     R   K  R  +  G     +   
Sbjct: 434 SEAEKERLRQQLSGKIQLLNQLRQEALELEKQMEWQRREMDKKHREIEDLGKHLASLSPL 493

Query: 471 LVK-GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
             +   +  + + +E  L +   N+  +       L+ I  +  E++ L   L    +  
Sbjct: 494 DPRHSHVKAQKAGKEQQLDMMDQNYRQLEGRLDDMLSRIAKETEEIKDLEQQLTEGQIAA 553

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              L  ++   +   G  E L+ +  Q + A        A   D+ Q   +     K+  
Sbjct: 554 NEALKRDLEGII--AGLQEYLESVKGQAKQAHDECRELHAEREDLLQRLTELEEEKKQLE 611

Query: 590 LLSRQKEEIEKQIAQVTAKG-EAEKTAILISILH--------EVHIQIHQIESQ 634
            ++ + E + K+IA++     E ++    +            E+  Q+   +++
Sbjct: 612 AVALEAEGMRKEIAELEHSLQEQQELNESLRQAQGDLSEYEAELEAQLKARDAE 665


>gi|289523466|ref|ZP_06440320.1| replicative DNA helicase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503158|gb|EFD24322.1| replicative DNA helicase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 439

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 39/116 (33%), Gaps = 3/116 (2%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L + +          + L    + +   Q  +  +     + K   P    +   
Sbjct: 7   AERAVLGSCLLDKDAALYVVETLRKEDFYDAVHQLAFEVIADMMQKDKAVDPLTFMEEAK 66

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           +RG   LL++L  Q   A L         V+      +  +++++   +     ++
Sbjct: 67  KRG---LLERLGGQPFVASLIDTVPTTANVEYHARIVRDKSVHRKMIQVGTYITKL 119


>gi|229163818|ref|ZP_04291761.1| S-layer y domain protein [Bacillus cereus R309803]
 gi|228619638|gb|EEK76521.1| S-layer y domain protein [Bacillus cereus R309803]
          Length = 888

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 20/117 (17%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E K     E    +      EL KQL+             +  +    +  +Q   L+ +
Sbjct: 30  ENKTRNSIEALPHIQSNEKSELQKQLEA--------VKERQIELEKREEILKQQEELFVK 81

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
              L ++K+E+ KQ  +                L EV  ++ +++ Q+A +EG   +
Sbjct: 82  VDELKQEKDELLKQDGEHKV------------QLEEVQQELDELKKQQAELEGKNPL 126


>gi|229198621|ref|ZP_04325323.1| hypothetical protein bcere0001_41480 [Bacillus cereus m1293]
 gi|228584903|gb|EEK43019.1| hypothetical protein bcere0001_41480 [Bacillus cereus m1293]
          Length = 999

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 97/278 (34%), Gaps = 27/278 (9%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDP +      K   ++ I +   L +  ++ E +   F+   E   L+    + +  ++
Sbjct: 414 EDPQAHETEKVKYLPQQFIEKICNLDNDKFESELKQVIFSHVIETERLQQQSLDELIELR 473

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
             + +      +++ L+ + +        +   +KK  + + +    +  +Q  L   ++
Sbjct: 474 TGRFKDN-ISLLKEELKHINKAIFDLEKLFTSDYKKKFQEKIEYKKKEIAVQQGLKPVEV 532

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            +  +             P I ++  +        + EL+ ++  +      +     + 
Sbjct: 533 VEVET------------DPQIQKKLEEL-------HGELENVYKNIDDSEGFKGKVNRDL 573

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                       +   ++   +   L+ A  E  +  +    ++ + +      L + K 
Sbjct: 574 -------SSIERVEGHIENFKKQYQLFIANCEKELDGIGLNIKEMMVVQTNLEALEKLKR 626

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           E+ +Q  Q+ AK + +    L      +  +I +++ Q
Sbjct: 627 ELIEQKRQLDAKLQQQSDHSLFKTKENIEGEIRKLQVQ 664


>gi|194380522|dbj|BAG58414.1| unnamed protein product [Homo sapiens]
          Length = 768

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 46/117 (39%), Gaps = 3/117 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 567 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 626

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + +
Sbjct: 627 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLM 683


>gi|164426599|ref|XP_957538.2| hypothetical protein NCU03899 [Neurospora crassa OR74A]
 gi|157071401|gb|EAA28302.2| hypothetical protein NCU03899 [Neurospora crassa OR74A]
          Length = 746

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 80/242 (33%), Gaps = 17/242 (7%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQAIRDRLQQLFQKYITEHS 444
                +         R + +         I  DQ +  + + A +D L    +    +  
Sbjct: 258 LHWMMQLAQMLEGYARHQYDDACMEAGVDIAGDQIIFDFLTSAYQDWLNMDDEAGDEDVE 317

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
              +   +      ++  ++ + +  +++G+      L+E   L      PAIL   ++ 
Sbjct: 318 RALQPHVQGMAEAFERSNAKYIQELEILEGE--NARLLKEIQELEKSTPDPAILDNHFKI 375

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
           + + +    E   L       +  +   L EE+            LK+ + + R      
Sbjct: 376 MEEDKIKFEEYNTLAMQRTEKYENRIQVLREEL------GKLHVELKEAEEERRQMQKAV 429

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
                ++ D+ +   +   L +     S++ E+++K++A        E+       L E+
Sbjct: 430 DDQGISMQDIDRMTSERERLQRSIESASQRLEDVKKKVA--------EREMEASQRLDEL 481

Query: 625 HI 626
             
Sbjct: 482 ER 483


>gi|148983521|ref|ZP_01816840.1| pneumococcal surface protein A [Streptococcus pneumoniae SP3-BS71]
 gi|147923668|gb|EDK74780.1| pneumococcal surface protein A [Streptococcus pneumoniae SP3-BS71]
          Length = 596

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 46/127 (36%), Gaps = 2/127 (1%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           +   L   L    VE K    E++   +          Q         L     +     
Sbjct: 188 DYATLKVALAKKEVEAKELEIEKLQDEISTLEQEVATAQHQVDNLKKLLAGVDPDDTEAI 247

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE-AEKTAILISILHEVHIQIHQIE 632
             +  +    L  +   L++++ E+EK +  +  +G+  ++     +   E++ ++  ++
Sbjct: 248 EAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAAEA-ELNKKVESLQ 306

Query: 633 SQEAMIE 639
           ++ A +E
Sbjct: 307 NKVADLE 313



 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L +        +  L++++ +  +      A+ 
Sbjct: 271 ELEKLLDSLDPEGKTQDELDKEAAEAELNKKVESLQNKVADLEKEISNLEI--LLGGADS 328

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            D     Q  LA   +   L + ++E++  + ++   G+ E+T
Sbjct: 329 EDDTAALQNKLA--TKKAELEKTQKELDAALNELGPDGDEEET 369


>gi|147811710|emb|CAN72669.1| hypothetical protein VITISV_012280 [Vitis vinifera]
          Length = 906

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/209 (11%), Positives = 70/209 (33%), Gaps = 19/209 (9%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++KY+ + + + R +++          +  +++    + +      +++ AL++    
Sbjct: 319 EEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRALVVAA-- 376

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
              +      +   I   +     +   L S   E      + +   +            
Sbjct: 377 --QLSSRYITD-KAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALE------ 427

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-------FRLLSRQKEEIEKQIAQVT 606
             + + +          + D+R   Q  +  YK+        R L +++EE+   + +  
Sbjct: 428 KEKDKASKARLVEVRRELDDLRDKLQPLMMKYKKEKERIDELRRLKQKREELLFALQEAE 487

Query: 607 AKGEAEKTAIL-ISILHEVHIQIHQIESQ 634
            + +  + A L    + EV   I  +E  
Sbjct: 488 RRYDLARAADLRYGAIQEVEAAIANLEGT 516


>gi|156717262|ref|NP_001096173.1| eukaryotic translation initiation factor 3 subunit A [Xenopus
           (Silurana) tropicalis]
 gi|229488240|sp|A4II09|EIF3A_XENTR RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 subunit 10; AltName:
           Full=eIF-3-theta
 gi|134025550|gb|AAI35791.1| eif3a protein [Xenopus (Silurana) tropicalis]
          Length = 1391

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 64/167 (38%), Gaps = 21/167 (12%)

Query: 491 LINHPAILQEQYQELADIRYDNN---------ELQKLWSFLFSDF-VEQKYFLPEEIHQR 540
           ++     ++E+ + L ++              ELQK+          E K    E I Q 
Sbjct: 568 ILARRQTIEERKERLENLNIQREKEEMEQKEAELQKVRKAEEERLRQEAKEREKERILQE 627

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             +     + ++L++  +      A  + +I ++ +       + K+   L ++K+E+++
Sbjct: 628 HEQIKKKTVRERLEQIKKTELGAKAFKDIDIENLEE-LDPDFIMAKQVEQLEKEKKELQE 686

Query: 601 QIAQVTAKGEAEKTAILISILHEVHI----------QIHQIESQEAM 637
           ++     K +  + A  +  +  +            ++ +++ +E +
Sbjct: 687 RLKNQEKKIDYFERAKRLEEIPLLKKAYEEQRINDMELWELQEEERI 733



 Score = 37.6 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    E+I  +L       +L +    ++ A +     E + + +    + +   ++R  
Sbjct: 512 QNMPSEQIRNQLT--AMSCVLSKAVGAIKPAHVLQEKEEQHQIAITAYQKNSRKEHQRIL 569

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +  EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 570 ARRQTIEERKERLENLNIQREKEEMEQKEAELQKVRKAEEERLRQEA 616


>gi|119587724|gb|EAW67320.1| centrosomal protein 164kDa, isoform CRA_c [Homo sapiens]
          Length = 1460

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 82/293 (27%), Gaps = 51/293 (17%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                      ++ I  S            E       ++           +      +L
Sbjct: 715 EQKNRQMLEQLKEEIEASEKSEQAALNAAKEKALQQLREQLEGERKEAVATLEKEHSAEL 774

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                    +RL    +    E     +   + A+ +++    + L Q      + S   
Sbjct: 775 ---------ERLCSSLEAKHREVVSSLQKKIQEAQQKEEAQLQKCLGQVEHRVHQKSYHV 825

Query: 481 SLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           +  E  L   L      ++ E  + L  ++    E Q++ +     +  ++     E+  
Sbjct: 826 AGYEHELSSLLREKRQEVEGEHERRLDKMK---EEHQQVMAKAREQYEAEERKQRAELLG 882

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L        L++L R                    +  +Q    +KR   L R+  E E
Sbjct: 883 HLTGE-----LERLQR--------------AHERELETVRQEQ--HKRLEDLRRRHREQE 921

Query: 600 KQIAQVTAKGE----------------AEKTAILISILHEVHIQIHQIESQEA 636
           +++  +    E                 E        L +V  Q+  ++S+EA
Sbjct: 922 RKLQDLELDLETRAKDVKARLALLEVQEETARREKQQLLDVQRQV-ALKSEEA 973


>gi|115648142|ref|NP_055771.4| centrosomal protein of 164 kDa [Homo sapiens]
 gi|162416241|sp|Q9UPV0|CE164_HUMAN RecName: Full=Centrosomal protein of 164 kDa; Short=Cep164
 gi|157169996|gb|AAI52749.1| Centrosomal protein 164kDa [synthetic construct]
 gi|162318052|gb|AAI56877.1| Centrosomal protein 164kDa [synthetic construct]
          Length = 1460

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 82/293 (27%), Gaps = 51/293 (17%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                      ++ I  S            E       ++           +      +L
Sbjct: 715 EQKNRQMLEQLKEEIEASEKSEQAALNAAKEKALQQLREQLEGERKEAVATLEKEHSAEL 774

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                    +RL    +    E     +   + A+ +++    + L Q      + S   
Sbjct: 775 ---------ERLCSSLEAKHREVVSSLQKKIQEAQQKEEAQLQKCLGQVEHRVHQKSYHV 825

Query: 481 SLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           +  E  L   L      ++ E  + L  ++    E Q++ +     +  ++     E+  
Sbjct: 826 AGYEHELSSLLREKRQEVEGEHERRLDKMK---EEHQQVMAKAREQYEAEERKQRAELLG 882

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L        L++L R                    +  +Q    +KR   L R+  E E
Sbjct: 883 HLTGE-----LERLQR--------------AHERELETVRQEQ--HKRLEDLRRRHREQE 921

Query: 600 KQIAQVTAKGE----------------AEKTAILISILHEVHIQIHQIESQEA 636
           +++  +    E                 E        L +V  Q+  ++S+EA
Sbjct: 922 RKLQDLELDLETRAKDVKARLALLEVQEETARREKQQLLDVQRQV-ALKSEEA 973


>gi|73949496|ref|XP_858973.1| PREDICTED: similar to transcription elongation regulator 1 isoform
           9 [Canis familiaris]
          Length = 933

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 592 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 651

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 652 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 699

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 700 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 748

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 749 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 808

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 809 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 861


>gi|126352598|ref|NP_001075229.1| myosin-2 [Equus caballus]
 gi|75054116|sp|Q8MJV1|MYH2_HORSE RecName: Full=Myosin-2; AltName: Full=Myosin heavy chain 2; AltName:
            Full=Myosin heavy chain 2a; Short=MyHC-2a; AltName:
            Full=Myosin heavy chain, skeletal muscle, adult 2
 gi|21907898|dbj|BAC05679.1| myosin heavy chain 2a [Equus caballus]
          Length = 1937

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/272 (10%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1563 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHVRVVETMQTMLDAEIRSRNDAIRIKKKMEG 1622

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1623 DLNEM-EIQLNHANRMAAEALRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAM 1675

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1676 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1735

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1736 ISQLQGEMEDILQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1795

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1796 QQRLDEAEQLALKGGKKQIQKLEARVRELEGE 1827


>gi|329114582|ref|ZP_08243341.1| Chaperone protein ClpB [Acetobacter pomorum DM001]
 gi|326696062|gb|EGE47744.1| Chaperone protein ClpB [Acetobacter pomorum DM001]
          Length = 890

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 70/206 (33%), Gaps = 10/206 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R ++           +  +++    K +L     + + AL+       
Sbjct: 339 YRKYIEKDAALARRFQPVFVGEPSVADTISILRGIKEKYELHHGVRITDGALVAAATLSN 398

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    +L   + S   E        I  ++      E LK+ D 
Sbjct: 399 RYITDRFLPDKAIDLIDEAASRLRMQIDSKPEELDELDRRIIQLKIE----REALKKEDD 454

Query: 556 QVRDAGLWSATTEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                 L +  +E   ++     +   +          + L  Q ++    +     KG+
Sbjct: 455 TASKDRLEAVESELADLEEKSNTLSAAWHAEKNRVNTIQKLQEQLDQARSDVEVAQRKGD 514

Query: 611 AEKTAILI-SILHEVHIQIHQIESQE 635
             + + L+  ++  +  QI + +  E
Sbjct: 515 LGRASELMYGVIPNLQGQIAEAQKTE 540


>gi|321453723|gb|EFX64932.1| hypothetical protein DAPPUDRAFT_265509 [Daphnia pulex]
          Length = 789

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 74/206 (35%), Gaps = 2/206 (0%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           ++L ++   E +   R  + N     ++       + + +  +  ++    E   +   +
Sbjct: 5   RELTREEKDEKNRKAREKRSNEDPEAKEVRLAANRERAKIAREEKRRRLNPEEVQVAKNL 64

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           N     +++  E  D R     L      +      Q         QR+ ++   +  +Q
Sbjct: 65  NAKKAREDRQAEAPDERALRQRLDAERKRVARSNETQVEHEARLHDQRIRQQLLRQ--EQ 122

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
            + + R   L  A  +A      +   + LA  ++  +L +++E   + +A+   + +  
Sbjct: 123 AEEENRARLLAEAERQAVFRQEEENRARLLAEAEQQAVLRQEEENRARLLAEAERQADLR 182

Query: 613 KTAILISILHEVHIQIHQIESQEAMI 638
           +   + + L     +   +  QEA I
Sbjct: 183 QDEQIRARLQAEAERQAALRQQEAAI 208


>gi|206602390|gb|EDZ38871.1| Putative OmpA family protein [Leptospirillum sp. Group II '5-way
           CG']
          Length = 265

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +   L +    +   +   +  DA L  A+        ++     + L  +   ++ QKE
Sbjct: 40  LQNALNDENLKQAAPEQLNKASDA-LKHASELLKNGAPKKDVDHYVYLATQRIKIAEQKE 98

Query: 597 ---EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
              E++K+I + +A  +        + +  +  ++ +++++E
Sbjct: 99  KAAELQKEIKKASAHRDQIMLEANQAKIERLKRELLKMKAKE 140


>gi|194219440|ref|XP_001496965.2| PREDICTED: similar to Rab11 family-interacting protein 3
           (Rab11-FIP3) (EF hands-containing Rab-interacting
           protein) (Eferin) [Equus caballus]
          Length = 652

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 84/221 (38%), Gaps = 21/221 (9%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-SQRLMQSSLVKGKLSKKPSLREA 485
            +  R+ +L +  +     + R  ++N +   +     ++L +  L   ++  + + ++ 
Sbjct: 364 FLEKRVLELEKDTVANGEQHSRLRQENLQLVHRANALEEQLKEQELRACEMVLEETRKQK 423

Query: 486 ALLLTLINHPAI-LQEQYQELADIRYDNNELQK----LWSFLFSDFVEQKYF--LPEEIH 538
            LL  +    +I ++     L  +  +N+EL+     L + +     E++      EE+ 
Sbjct: 424 ELLCKMEREKSIEVENLQARLQQLDEENSELRSCTPCLKANIERLEEEKQKLLDEIEELS 483

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            RL +       ++L  ++          +    ++ +       L K+   L R K E 
Sbjct: 484 LRLSDEQENR--RKLGDRLSHERHQFQRDKEATQELIED------LRKQLEHLQRFKLEA 535

Query: 599 EKQIAQVTAKGEAE-----KTAILISILHEVHIQIHQIESQ 634
           E++  + ++ G  E     + + L   +  +      ++ Q
Sbjct: 536 EQRRGRSSSAGLQEYHSRTRESELEQEVRRLKQDNRNLKEQ 576


>gi|189239931|ref|XP_001813815.1| PREDICTED: similar to Myosin heavy chain CG17927-PF isoform 5
            [Tribolium castaneum]
          Length = 1960

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1573 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1632

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    + +  ++  + E           A+  E 
Sbjct: 1633 NKANAEAQKTIKRYQQQLKDTQTALEEEQRARDEAREQLGISER-------RANALQNEL 1685

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE----IHQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 1686 EESRTLLEQADRARRQAEQELGDAHEQLNDLSAQNSSLSAAKRKLETELQTLHSDLDELL 1745

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E QI  +  + +  +   L
Sbjct: 1746 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKDLQVRLDEAEANAL 1805

Query: 618  ---ISILHEVHIQIHQIESQ 634
                 ++ ++  ++ ++E++
Sbjct: 1806 KGGKKLIQKLEQRVRELENE 1825


>gi|189194337|ref|XP_001933507.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979071|gb|EDU45697.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 1117

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/268 (10%), Positives = 83/268 (30%), Gaps = 23/268 (8%)

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
           +   ++         + + +R  +       +E   L       I  ++ +      ++ 
Sbjct: 229 EKELDEYKQRLSEYAEKVKRRHADEGIREEMEELRRLAEERAAEIERLEGKVEDAKSAEE 288

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             D+L    +    E         +     ++        Q S   G   K   L++ A 
Sbjct: 289 ELDKLDAELESAQAELKRRDALLDEQEEQINKLENKLAQAQDSQAAGNGEKDRQLKDQA- 347

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
                     + E  ++L    + +++   L     +  + ++    E++  +L      
Sbjct: 348 --------KRIAELEEQL--QSFKDSQHDDLADK--ARHLAERSEKIEDLEDQLRSVE-R 394

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEIEKQIAQVT 606
           E   ++D+        + + +A I ++ Q   +            RQ    +E ++  + 
Sbjct: 395 EKDTEIDKLQTKFASAADSKDAQIRELEQQLDEVERELDEADEQKRQELAVLEDRLRSME 454

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
            + +        +   E+  ++   +++
Sbjct: 455 REKD--------AEFRELQRRLQTAQNE 474


>gi|149050839|gb|EDM03012.1| rCG62324, isoform CRA_b [Rattus norvegicus]
          Length = 481

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 55/180 (30%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L  G+        E AL+ + +             + +   + E + +  +   
Sbjct: 221 PTPTKRLQYGQDMPNLLADEHALIASYVARLQHCTRVLDSPSRL---DEEHRLIARYAAR 277

Query: 525 DFVEQKYFLP---EEIHQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E         +        +   +L+ +L+ + R+            E       + 
Sbjct: 278 LAAEAGNMTRPPTDASFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEK 337

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 338 AQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEGLMKLLKE-EEQKQAAQAT 395


>gi|148977120|ref|ZP_01813760.1| putative conjugative transfer protein TraI [Vibrionales bacterium
            SWAT-3]
 gi|145963589|gb|EDK28851.1| putative conjugative transfer protein TraI [Vibrionales bacterium
            SWAT-3]
          Length = 1921

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/352 (9%), Positives = 92/352 (26%), Gaps = 24/352 (6%)

Query: 59   KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
            +G++  ++   KG  ++ +      S+ E++      A   L   +    ++      L 
Sbjct: 1586 RGYFKDYTTGEKGTLINLIMNHKAISYKEAM----NEAHKMLNEPEKYQLEENSKHEKL- 1640

Query: 119  RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
                         L         +    R   + ++ M               ++     
Sbjct: 1641 -------------LSTTPRHIAQFEERARDYINQSLPMDNTLAQTYLNKLGVNNIENHHV 1687

Query: 179  SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
                 + +        +  +    +      I  +          +L          S +
Sbjct: 1688 KFHPAVYSSEDKSFHPAMLTNIHNKEGETKAIEVTYLDTQGNKDTSLDINPRTLGTKSKQ 1747

Query: 239  TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
               FH+G+NL N       ++ S     +      II V    D+ ++    ++  +  +
Sbjct: 1748 LTHFHQGENL-NTTIISTSIEHSFLIRDQTQGQIDIINVNHKNDIQNISTDELRQNIIIV 1806

Query: 299  GTALTEY-----QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
                          +++   + R +     D+           L   +      ++    
Sbjct: 1807 LNHGNHDLNPNNIEKIVENFNGRDIQFMPDDNLKDDIKSCIDKLERDNSAHDIELSEAHS 1866

Query: 354  SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
            S  E+    +    K   +   +E     +   ++E E           + E
Sbjct: 1867 SHQENELDTLNYNEKKELDSQSLEHFEPKEYSPQQEMEFNQSEKVSHWEDRE 1918


>gi|126339824|ref|XP_001376000.1| PREDICTED: similar to myosin, heavy chain 9, non-muscle [Monodelphis
            domestica]
          Length = 1960

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 94/263 (35%), Gaps = 24/263 (9%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EKL ++     +     E E        ++ ELE    +    +++++ R  + Q  + 
Sbjct: 880  AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQTEKK 939

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++QQ  Q+   +        +K    +       + ++   +  +       +E  LL  
Sbjct: 940  KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIILEDQNCKLAKEKKLLE- 998

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +            +  ++ +RL         
Sbjct: 999  -----DRISEFTTNLTEEEEKSKSLAKLKNK--------HEAMITDLEERLRREEKQ--- 1042

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                RQ  +        ++  ++ +    QA     +   L++++EE++  +A+V    E
Sbjct: 1043 ----RQELEKTRRKLEGDSTDLNDQIAELQAQIAELKM-QLAKKEEELQAALARVEE--E 1095

Query: 611  AEKTAILISILHEVHIQIHQIES 633
            A +  + +  + E+  QI +++ 
Sbjct: 1096 AAQKNMALKKIRELESQISELQE 1118



 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 71/228 (31%), Gaps = 15/228 (6%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            + ++ +    + +R+   +L  +            K     +D +       +S     K
Sbjct: 1579 QSEEKKKQLVRQVREMEAELEDERKQRSVAVAARKKLEMDLKDLEAHIDSANKSRDEAIK 1638

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +K   +    +  L         + + LA  + +  +L+ + + +     E       
Sbjct: 1639 QLRKLQAQMKDYMREL---DDTRASREEILAQSKENEKKLKSMEAEMIQLQEELAAAERA 1695

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +   +   EL  ++        L           + Q  ++         L++ + 
Sbjct: 1696 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELINDRL 1752

Query: 596  EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIESQ 634
            ++   QI Q+      E++           L     E+ +++ ++ES 
Sbjct: 1753 KKANLQIDQINTDLNMERSHGQKNENARQQLERQNKELKVKLQEMEST 1800


>gi|119619472|gb|EAW99066.1| dystrophin (muscular dystrophy, Duchenne and Becker types), isoform
            CRA_f [Homo sapiens]
          Length = 3685

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 52/450 (11%), Positives = 127/450 (28%), Gaps = 34/450 (7%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 2529 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 2584

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 2585 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 2644

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2645 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 2703

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 2704 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 2763

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2764 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 2823

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2824 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGL- 2881

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                       L+    E    +  Q   +   L K+   ++ + E++   +     + +
Sbjct: 2882 ---------EKLYQEPRELPPEERAQNVTRL--LRKQAEEVNTEWEKLN--LHSADWQRK 2928

Query: 611  AEKTAILISILHEVHIQIHQIESQEAMIEG 640
             ++T   +  L E   ++     Q  +I+G
Sbjct: 2929 IDETLERLRELQEATDELDLKLRQAEVIKG 2958



 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L +  +K   +     +  K        K  S R   ++L+  +      L E  +   
Sbjct: 1701 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 1760

Query: 491  -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                  I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 1761 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 1820

Query: 546  ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                 ELL++ D   +         E  I                        +   Q  
Sbjct: 1821 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 1880

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1881 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 1932


>gi|118098621|ref|XP_415196.2| PREDICTED: similar to myosin-like protein [Gallus gallus]
          Length = 2332

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 74/233 (31%), Gaps = 20/233 (8%)

Query: 397  TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK-------YITEHSGYGRY 449
              +               I+ Q  R    + + +  + L +             +   + 
Sbjct: 1663 HMEMEMLSRNKTLADEQLIQMQHERDDLLRRVSEDQEDLNELMAKHKALIAQSATDIAQI 1722

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR--EAALLLTLINHPAILQEQYQELAD 507
             +   +  + K   Q L +  LV      +   R  E A++       A +++   +L  
Sbjct: 1723 QELQTQVEEVKKEKQSLQEKLLVAQASVARLEQRPAERAVIS---RQEARIRDLESQLDF 1779

Query: 508  IRYDNNELQ----KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
                    +    +L   +     E +     E  ++   + +   ++++   + +    
Sbjct: 1780 QAVQMKRFEVLVLRLRDSIIKMGEELEKAAESEAREKESTKYYQRRMEEMKADMDELVQR 1839

Query: 564  SATTEANIVDVRQGYQQALALYKRFRL----LSRQKEEIEKQIAQVTAKGEAE 612
               +    V++ Q   +A+A  +  +       R+  +++  + ++ A  +++
Sbjct: 1840 ELESSRRRVELEQQLAEAVAARQGLQADLGTAIRRIADLQLALEELRASDDSD 1892


>gi|329663986|ref|NP_001193103.1| myosin-8 [Bos taurus]
          Length = 1937

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEVDRKIAEKDEEIEQLKRNHIRVVETMQSTLDAEIRSRNDALRVKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1624 DLNEM-EIQLNHANRLAAESLRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAI 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828


>gi|197098296|ref|NP_001125143.1| huntingtin-interacting protein 1-related protein [Pongo abelii]
 gi|55727110|emb|CAH90311.1| hypothetical protein [Pongo abelii]
          Length = 1068

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 87/266 (32%), Gaps = 24/266 (9%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            ++      +        L++ +  IK +  R  Y   ++ R+  L  +   +     + 
Sbjct: 348 VKDDRDLQIESLKREVEMLRSELEKIKLEAQR--YISQLKSRVNALEGELEEQRKQKQKA 405

Query: 450 WKKNARHR----DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
              N + R      +       +S  ++ +  +K S  EA        H  ++    + L
Sbjct: 406 LVDNEQLRHELAQLRAAQLEGERSQGLREEAERKASATEARYNKLKEKHSELVHVHAELL 465

Query: 506 ADIRYDNNEL---QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
                   +L   Q+    + +   EQ  F  E++ +   E    E   QL++  R+   
Sbjct: 466 RKNADTAKQLTVTQQSQEEV-ARVKEQLAFQVEQVKRE-SELKLEEQSDQLEKLKRELEA 523

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-------- 614
            +         +    Q    L  R  +LS +K+ +   + Q  A   A ++        
Sbjct: 524 KAGELARAQEALSHTEQSKSELSSRLDMLSAEKDALSGAVRQREADLLAAQSLVRETEAA 583

Query: 615 -----AILISILHEVHIQIHQIESQE 635
                        E+  ++ + ESQE
Sbjct: 584 LSREQQRSSQEQSELQGRLAERESQE 609


>gi|17227974|ref|NP_484522.1| WD-40 repeat-containing protein [Nostoc sp. PCC 7120]
 gi|17129823|dbj|BAB72436.1| WD-40 repeat protein [Nostoc sp. PCC 7120]
          Length = 1708

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 105/300 (35%), Gaps = 29/300 (9%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             +     K  F++ + + L +  +           +   E      +L+   N+I D++
Sbjct: 684 FGYSDRQQKKEFDQFLSQCLNISFVKIILSIREDYLHRLLEFKH-LSYLEAINNNILDKQ 742

Query: 420 LRY-------YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           +RY        Y++ I  +L    Q  +            +    + +    +++ + + 
Sbjct: 743 IRYQLNNFSPEYAKVIIQKLTARSQVNLEPALIDAVVEDLSTELGEVRPIELQVVGAQIQ 802

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF-SDFVEQKY 531
             +++     ++      +  +        + + +   +N     L  +L   +  ++ +
Sbjct: 803 DERINTLKQYQQYRPNKLIERY------IKELIKECGPENERAALLVLYLLTDESNKRPF 856

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI----------VDVRQGYQQA 581
               E+   L E    E L  +   + ++GL     +               +R   QQ 
Sbjct: 857 KTRAELATELAELEDPEKLDLVLDILVNSGLVVLFPDIPERYQLIHDYLVDLIRYLQQQE 916

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI----SILHEVHIQIHQIESQEAM 637
            +L  +   L R+ ++ + +IA++ ++   +K + L         ++  ++ ++  +E +
Sbjct: 917 SSLQAQLDQLRRKVQQSQSEIARLKSELSQKKQSKLTDTHPQQGLDLVTELRELRKREEL 976


>gi|332867885|ref|XP_003318743.1| PREDICTED: protein CASP isoform 4 [Pan troglodytes]
          Length = 639

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 98/282 (34%), Gaps = 16/282 (5%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 64  DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 123

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 124 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 183

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 184 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 243

Query: 554 DRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQI 602
            ++               +  A  E  I  + +  Q+  A   + R  S  Q  ++E+Q+
Sbjct: 244 IQKAPDMAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQL 303

Query: 603 AQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           +   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 304 SAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 345


>gi|332709260|ref|ZP_08429224.1| capsular exopolysaccharide family protein [Lyngbya majuscula 3L]
 gi|332351985|gb|EGJ31561.1| capsular exopolysaccharide family protein [Lyngbya majuscula 3L]
          Length = 731

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 44/137 (32%), Gaps = 9/137 (6%)

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
                 L  + + + ++  E        + + L +      L+    +         T  
Sbjct: 137 ELVTTVLNAVANAMVTESAEGIRSEARAVREFLEKEVPLRRLEVAAAEAALNKFKQTTGL 196

Query: 569 ANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI--------S 619
            +  +  Q   ++LA L  + R +S Q ++ + +  ++        T             
Sbjct: 197 VSPEEQTQLLVRSLATLEDQERAVSIQLQDAKTRSQELQTITSLNNTQNAYIAGRIGQDQ 256

Query: 620 ILHEVHIQIHQIESQEA 636
            L  +  Q+ +++ + A
Sbjct: 257 ELQALRAQLVELDRELA 273


>gi|269925711|ref|YP_003322334.1| ABC transporter related protein [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789371|gb|ACZ41512.1| ABC transporter related protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 767

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 67/212 (31%), Gaps = 32/212 (15%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
            Y+      ++  +   +IT + G    +K  A+  + K         S  + K ++KP 
Sbjct: 500 RYFIDKFAQKIIVVEDTHITPYLGNYTDYK--AKVSEVKLEVSTKPAPSQAQHKANRKPK 557

Query: 482 LREAALLLTLINHPAI---LQEQYQELADI--RYDNNELQKLWSFLFSDFVEQKYFL--P 534
            +E  +L        +   + +    L ++    +++ L +     +S   E        
Sbjct: 558 AKEREILRLRAQVQDLETEISDTEDRLQELQAHLEDDSLYQDREHYYSLLSEYGELQGRL 617

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           +++++R  ++    LL+QL+     +                                R+
Sbjct: 618 QDLNERWEKK--ASLLEQLEMLGSASFEPDELEPEA---------------------QRR 654

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
             E++  +          + A ++     +  
Sbjct: 655 LRELKNALEDPALYENQGELAAVLQEYLTLSK 686


>gi|326674641|ref|XP_003200176.1| PREDICTED: plectin-like [Danio rerio]
          Length = 4530

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 90/294 (30%), Gaps = 21/294 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               ++   + A +        L     K     R     +E A  +   +      KD+ 
Sbjct: 1638 AERLKKQQEEADKAREDAEKELEKWRQKANEALRLRLQAEEEAHKKTLAQEDAEKQKDEA 1697

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    +A  +    L QK + E     +     +  + +      L++         ++
Sbjct: 1698 EREAKKRAKAEE-SALKQKDMAEQELERQRKLAESTAQQKLSAEHELIRLRADFDHAEQQ 1756

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             SL E   L  L +  +  ++Q ++L D         ++   L S   +      E+  Q
Sbjct: 1757 RSLLEDE-LYRLKSEVSAAEQQRKQLEDELSKVRSEMEVLLQLKSKAEKDSMSTTEKSKQ 1815

Query: 540  RLCERG------------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
             L                   + ++  RQ + A   +A   A    + +    A+    R
Sbjct: 1816 LLEAEAGKLRDLADEAAKLRAIAEEAKRQRQVAEEEAARQRAEAERILKEKLAAINEATR 1875

Query: 588  FR-LLSRQKEEIEKQIAQVTAKGEAEKTA------ILISILHEVHIQIHQIESQ 634
             +       +E E +  ++  K + E                ++  +I+Q++  
Sbjct: 1876 LKTEAEIALKEKEAENERLRRKADDEAYQRKALEDQASQHKQDIEQKINQLKKS 1929



 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 72/241 (29%), Gaps = 30/241 (12%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             Q ++ RL++  + +        R     A   ++       +  +  + +   K   ++
Sbjct: 2369 KQLMQQRLKEETEGFQKSLEAERRRQLDIAAEAERLRLQVSQLSDAQSRAEDEAKRFKKQ 2428

Query: 485  AALLLTLINHPAILQE----QYQELADIRYD-NNELQKLWSFLFSDFVEQKYF--LPEEI 537
            A  +   ++   +  +      ++L   R     E   L   +     E+       E++
Sbjct: 2429 ADDISARLHETELSTKERMTVVEKLEIQRLSSTREADDLRKAIADLENEKAKLKKDAEDL 2488

Query: 538  HQR------LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
             ++        +    +    L +            E  I D ++  +       R    
Sbjct: 2489 QKKSKEMVNAQQEQIKQEKTILQQTFMSEKEMLLKKEKQIEDEKKRLESQFEEEVRKSKA 2548

Query: 592  SRQKEEIEKQ-----------------IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             + ++E +++                 I Q  A+ E       +  L    ++  ++ ++
Sbjct: 2549 LKDEQERQRKQMEDEKIKLKASMDAALIKQKEAEKEMFNKQKEMQELERKKLEQERMLAE 2608

Query: 635  E 635
            E
Sbjct: 2609 E 2609



 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 104/333 (31%), Gaps = 17/333 (5%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D D    R  Y A +     +    +V  VL+ + ED     +   +    K + +    
Sbjct: 2055 DADKEAERQIYAAKEAAEKAITAEQQVQSVLVQQKEDSLVQKKLKEEFEKAKRLAQEAEK 2114

Query: 382  VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI---RDRLQQLFQK 438
                 ++E         D   + +       N  K Q+      +      ++  Q    
Sbjct: 2115 AKEKAEKEAALLRQQAEDAERQRQTAEVEATNQAKAQEEAERLRKDAELEAEKRAQAEAA 2174

Query: 439  YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
             + +         ++ +H +Q    +  ++  L K KL    + ++ ++L   ++   + 
Sbjct: 2175 ALKQKQIADEEMARHKKHAEQTLKQKSQVEQELAKVKLRLDETDKQKSVLDEELH--RLK 2232

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE--IHQRLCERGFGELLKQLDRQ 556
             E    +        EL K+   +      +     E   + Q+  +     L ++ +  
Sbjct: 2233 DEVGDAVKQKAQVEEELFKVRIQMEELIKLKLRIEQENQRLIQKDKDNTQKFLAEEAENM 2292

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--------K 608
             + A   +  +       R  +     L ++  L  +  +E  + I + +         +
Sbjct: 2293 KKLAEEAARLSIEAQETARMRHIAETDLAEQRALAEKMLKEKMQAIQEASKLRAEAEMLQ 2352

Query: 609  GEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
             + +        L E    + Q   +E   EGF
Sbjct: 2353 RQKDLAQEQAQRLLEDKQLMQQRLKEET--EGF 2383


>gi|255692798|ref|ZP_05416473.1| ATP-dependent chaperone protein ClpB [Bacteroides finegoldii DSM
           17565]
 gi|260621516|gb|EEX44387.1| ATP-dependent chaperone protein ClpB [Bacteroides finegoldii DSM
           17565]
          Length = 862

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/212 (9%), Positives = 67/212 (31%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++           +  +++    + +      +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVQVDEPDNLSTISILRGLKERYENHHHVRIKDDAIIAAVELSS 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      +     +          +   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDKPKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           ++    L     +      +  +Q    L  + +    + E ++ +  +   +G+  K  
Sbjct: 437 EIIGKELAELKEQEKSFKAK--WQSEKTLMDKIQQNKVEIENLKFEAEKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L   + E   ++ +++   AMI+
Sbjct: 495 EIRYGKLQALDKEIEETQQKLREMQGDTAMIK 526


>gi|224012695|ref|XP_002295000.1| member of the clp superfamily, regulatory beta subunit
           [Thalassiosira pseudonana CCMP1335]
 gi|220969439|gb|EED87780.1| member of the clp superfamily, regulatory beta subunit
           [Thalassiosira pseudonana CCMP1335]
          Length = 916

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 77/218 (35%), Gaps = 30/218 (13%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI +     R +++          +  +++    + +L     +R+ ALL       
Sbjct: 340 YRKYIEKDKALERRFQQVYVGEPSPEDTVSILRGLKPRYELHHGVRIRDEALLAAAKLSS 399

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             L +++     I   +    KL + L              I   +  +       +++R
Sbjct: 400 RYLPDRFLPDKAIDLVDEACAKLKNEL---------TSKPTILDEIDRKIIQM---EMER 447

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE----------EIEKQIAQV 605
               + +      A+++ +     + L LY +   L+ + +          E++++IA+V
Sbjct: 448 LSIKSDVEKDGIGADMIRLENLETELLKLYDQQADLTARWQAEKVTVQGANELQEKIAEV 507

Query: 606 TAKGEAEKTAILISILHEVH--------IQIHQIESQE 635
             + E  +    ++   E+          Q+   +S E
Sbjct: 508 QLEIEKAEREYDLNTAAELKYGTLPQLMEQLEAAKSSE 545


>gi|195570464|ref|XP_002103227.1| GD20308 [Drosophila simulans]
 gi|194199154|gb|EDX12730.1| GD20308 [Drosophila simulans]
          Length = 2203

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 83/248 (33%), Gaps = 40/248 (16%)

Query: 402  AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
             ++   + +    +++Q  R    +  + +     Q          +  ++  R +D   
Sbjct: 1623 QKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAARQERQAKERYGREKDVLQ 1682

Query: 462  PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY---DNNELQKL 518
              +  ++ +L   +L     L+E  L               +EL ++ +      E  +L
Sbjct: 1683 AEKFTLEQTLADTRLD--LDLKEEKLASL-----------QRELEEMTFGGGTEEEFAQL 1729

Query: 519  WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                       +     E   +  E    E+  Q+    +       T E    + R+  
Sbjct: 1730 R----------RSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRES 1779

Query: 579  QQALALYKRFR-LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE----- 632
            QQ     +  R    ++ + +E Q+     + E E+  +L+   HE+  ++  +E     
Sbjct: 1780 QQRDEELEEVRGNGYKKIKALECQL-----ETEHEERTLLLREKHELERRLSSMEDRDRV 1834

Query: 633  ---SQEAM 637
               ++EA+
Sbjct: 1835 DRDAEEAL 1842



 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/284 (8%), Positives = 76/284 (26%), Gaps = 21/284 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE--IHLKNCINHIKDQ 418
              +R   +   ++   E   +    +K+          +                 +   
Sbjct: 1769 ETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSM 1828

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            + R    +   + L Q  ++ + ++    +  +          P + L++   ++ +L  
Sbjct: 1829 EDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIR--QLRNQLED 1886

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              S R        +      +   +        +   +        +     +    E+ 
Sbjct: 1887 AESAR-----SLAMKARQTAE--AELTEVQAMFDESHRARNDA--EERANAAHRDRAELQ 1937

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             ++ E             ++             ++V +   +   +      L  Q  E+
Sbjct: 1938 AQIEENEEEL-----GELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAEL 1992

Query: 599  EKQIAQVTAKGEAEKTA---ILISILHEVHIQIHQIESQEAMIE 639
            + ++  V   G+         L     E+  ++   ++  A +E
Sbjct: 1993 QHRLDNVENLGDPSMAMMSKRLELRTKELESRLELEQATRARLE 2036


>gi|194768425|ref|XP_001966312.1| GF22063 [Drosophila ananassae]
 gi|190617076|gb|EDV32600.1| GF22063 [Drosophila ananassae]
          Length = 1120

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 70/245 (28%), Gaps = 23/245 (9%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            E   ++T +E       L +    + D +      + + +    LFQ          R 
Sbjct: 418 MEETHYSTNEELQATLQELADLQTQLTDTQTEN---ERLAEEKDVLFQSLC-------RQ 467

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
            +K    R Q    Q L+     +       S RE  LL        +++   +E   + 
Sbjct: 468 TEKLNESRTQISTLQELLLRDTKQAATEVSASEREEKLL-------DLIKTSQEEREAVL 520

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               E+    + L       +                  L  QLD    +     A    
Sbjct: 521 LKQEEMGAELAELRQAREAGQQEQQR------QRERIALLDSQLDAANAERRQGEAQFSQ 574

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
              ++ Q   +   L         + EE+E  +A+      ++           +  ++ 
Sbjct: 575 AKDEISQRAIEISRLSTLLENARSKIEELEADLARGDKTDLSDVLDAARKEKDALEERVA 634

Query: 630 QIESQ 634
           +++ Q
Sbjct: 635 ELQDQ 639


>gi|225550769|ref|ZP_03771718.1| ABC transporter, permease protein [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379923|gb|EEH02285.1| ABC transporter, permease protein [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 736

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 39/326 (11%), Positives = 106/326 (32%), Gaps = 21/326 (6%)

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS----FIRCYGKTAFEKLIV 376
           +DG   GL +    +  +    + G          G  P       I      A   ++ 
Sbjct: 301 YDGIAMGLISLTHPLATIPVSFLMGLLQQSADNLGGSFPQDLSGIIISFVMLGAAMFILF 360

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK--LRYYYSQAIRDRLQQ 434
           E +  V  ++      +  +   +      +  +    I  +    R  Y Q +++  ++
Sbjct: 361 ERISPVYWIYHLIYTYKGKDYYRDYENKNNNTISEYKAIYIEINKKRNQYLQELKELRKE 420

Query: 435 L--FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL--LT 490
           L  F+     +    +Y       +       ++  S  ++   +    L++  ++   T
Sbjct: 421 LDKFKNQKQYNGVNEQYQYTVNYIKTTYNNWLKVEYSKYLEQMKNNVMQLKKHLIIERAT 480

Query: 491 LINHPAI--LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           L+ +P I   ++   +L    ++N   +KL        ++ K    + + + L  +  G+
Sbjct: 481 LVYYPEINTTRKVKNKLK--HFENISAKKL------SRIKDKIHNEDFLIKNLVAKEIGK 532

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             +                E N   +       L+L  +   +     E ++   +   +
Sbjct: 533 YAQSKSFDYNKLKYLLQQYENNDSILTIDLIDELSLILKDEQVQVMFNEFKQASNENNLE 592

Query: 609 GEAEKTAILISILHE-VHIQIHQIES 633
             +     ++S ++  +  ++ Q+ S
Sbjct: 593 HISSLKNEIMSYINSLLDSRLEQLSS 618


>gi|171920546|ref|ZP_02931818.1| ABC transporter, permease protein [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|188024348|ref|ZP_02997020.1| ABC transporter, permease protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188518442|ref|ZP_03003930.1| ABC transporter, permease protein [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|188524201|ref|ZP_03004263.1| ABC transporter, permease protein [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|195867391|ref|ZP_03079395.1| ribose/galactose ABC transporter [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273540|ref|ZP_03206076.1| ribose/galactose ABC transporter [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|225551229|ref|ZP_03772175.1| ABC transporter, permease protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|171903243|gb|EDT49532.1| ABC transporter, permease protein [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|188018614|gb|EDU56654.1| ABC transporter, permease protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188998128|gb|EDU67225.1| ABC transporter, permease protein [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|195659796|gb|EDX53176.1| ABC transporter, permease protein [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|195660867|gb|EDX54120.1| ribose/galactose ABC transporter [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198250060|gb|EDY74840.1| ribose/galactose ABC transporter [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|225379044|gb|EEH01409.1| ABC transporter, permease protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 736

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 39/326 (11%), Positives = 106/326 (32%), Gaps = 21/326 (6%)

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS----FIRCYGKTAFEKLIV 376
           +DG   GL +    +  +    + G          G  P       I      A   ++ 
Sbjct: 301 YDGIAMGLISLTHPLATIPVSFLMGLLQQSADNLGGSFPQDLSGIIISFVMLGAAMFILF 360

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK--LRYYYSQAIRDRLQQ 434
           E +  V  ++      +  +   +      +  +    I  +    R  Y Q +++  ++
Sbjct: 361 ERISPVYWIYHLIYTYKGKDYYRDYENKNNNTISEYKAIYIEINKKRNQYLQELKELRKE 420

Query: 435 L--FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL--LT 490
           L  F+     +    +Y       +       ++  S  ++   +    L++  ++   T
Sbjct: 421 LDKFKNQKQYNGVNEQYQYTVNYIKTTYNNWLKVEYSKYLEQMKNNVMQLKKHLIIERAT 480

Query: 491 LINHPAI--LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           L+ +P I   ++   +L    ++N   +KL        ++ K    + + + L  +  G+
Sbjct: 481 LVYYPEINTTRKVKNKLK--HFENISAKKL------SRIKDKIHNEDFLIKNLVAKEIGK 532

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             +                E N   +       L+L  +   +     E ++   +   +
Sbjct: 533 YAQSKSFDYNKLKYLLQQYENNDSILTIDLIDELSLILKDEQVQVMFNEFKQASNENNLE 592

Query: 609 GEAEKTAILISILHE-VHIQIHQIES 633
             +     ++S ++  +  ++ Q+ S
Sbjct: 593 HISSLKNEIMSYINSLLDSRLEQLSS 618


>gi|164427433|ref|XP_955770.2| hypothetical protein NCU03483 [Neurospora crassa OR74A]
 gi|166951800|sp|Q01397|DYNA_NEUCR RecName: Full=Dynactin, 150 kDa isoform; AltName: Full=150 kDa
           dynein-associated polypeptide; Short=DAP-150;
           Short=DP-150; AltName: Full=p150-glued
 gi|157071741|gb|EAA26534.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1367

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 75/227 (33%), Gaps = 25/227 (11%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +    RL+ + Q+   E     +  +++ R  +         +  L + +      LRE
Sbjct: 480 LREALIRLRDITQQQEEELKDQIKSMEEDLREFETIKEQHTTAKEKLAQTEAI-VEDLRE 538

Query: 485 AALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
                  +N+    +E  + L +   + + E+++L   +  D    K    E     +  
Sbjct: 539 Q------LNNALGAEEIIESLTEQTMNQSEEIKELR-AVIDDLESLKEINDELEINHVQN 591

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK--Q 601
               E+ +++D +                 +           +    L    E++     
Sbjct: 592 E--KEMQEEIDLKDSIIAEQFRQANLQRESLEDMEYTLSRFRELVTSLQSDLEDMRASHA 649

Query: 602 IAQVTAKGEAEKTAILI------------SILHEVHIQIHQIESQEA 636
           + +  ++    ++  ++            + +  + +++ ++E+QEA
Sbjct: 650 VTENESEQLNSRSRAMLDLNMKLQISASKAQVKTIDLELRRMEAQEA 696



 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 74/229 (32%), Gaps = 22/229 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + ++ +L+ L +K + +        K  A     +   Q L            +P  +E
Sbjct: 331 IEDLKAKLKVLEKKRMEDREKLNSLEKVKAERDKFERIIQTLQIKY--------QPQQQE 382

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              L   +          +EL        EL  L   +  +  E      + + Q+  E 
Sbjct: 383 IQDLKRQLKEAENRLYNVEELQAEHDTAMELATLDREMAEETAEVLKVELDALKQKNEEL 442

Query: 545 GFGELLKQLDRQVRDAGLWSATT--------EANIVDVRQGYQQALAL-YKRFRLLSRQK 595
                + + +      G+             E N   +R+   +   +  ++   L  Q 
Sbjct: 443 ELEVEVLREENSEFTNGMSPEERASTGWLQMERNNERLREALIRLRDITQQQEEELKDQI 502

Query: 596 EEIEKQIAQVTAKGEA-----EKTAILISILHEVHIQIHQIESQEAMIE 639
           + +E+ + +     E      EK A   +I+ ++  Q++     E +IE
Sbjct: 503 KSMEEDLREFETIKEQHTTAKEKLAQTEAIVEDLREQLNNALGAEEIIE 551


>gi|148686917|gb|EDL18864.1| golgi autoantigen, golgin subfamily a, 5, isoform CRA_c [Mus
           musculus]
          Length = 612

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 80/269 (29%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD----QKLRYYYSQAIRDRLQ 433
           +      + K   +            LE         ++D      L+    Q +++RL 
Sbjct: 294 AKDSQLAVLKVRLQEADQVLSSRTEALEALRSEKSRIMQDHKEGSSLQNQALQTLQERLH 353

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 354 EADATLKREQESYKQMQSEFA---------ARLNKMEVDRQNLAEAVTLAER-------K 397

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    ++  +    ++   + L+     L     +        E++   L E    E L+
Sbjct: 398 YSEEKKKVDELQQQVKLHRSSLESAKQELVDYKQKATRILQSKEKLINSLKEGSSFEGLE 457

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 458 SSTASSMELEELRHEKEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEAESAREQLQDLQD 517

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   +E
Sbjct: 518 QIAKQRTSK--QELETELERMKQEFRYME 544



 Score = 37.9 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 82/224 (36%), Gaps = 8/224 (3%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSG 445
            E +       +   +++      +N +  +  R   ++A  + +R     +K + E   
Sbjct: 353 HEADATLKREQESYKQMQSEFAARLNKM--EVDRQNLAEAVTLAERKYSEEKKKVDELQQ 410

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             +  + +     Q+    +   + +++ K     SL+E +    L +  A   E  +  
Sbjct: 411 QVKLHRSSLESAKQELVDYKQKATRILQSKEKLINSLKEGSSFEGLESSTASSMELEELR 470

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +      E+QKL   +     E +    +++ +        E L+ L  Q+        
Sbjct: 471 HEKEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEA---ESAREQLQDLQDQIAKQRTSKQ 527

Query: 566 TTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             E  +  ++Q ++     L++    L  + ++ E++I ++  +
Sbjct: 528 ELETELERMKQEFRYMEEDLHRTKNTLQSRIKDREEEIQKLRNQ 571


>gi|73962325|ref|XP_537356.2| PREDICTED: similar to Golgi autoantigen, golgin subfamily A member
           5 (Golgin-84) (RET-fused gene 5 protein) (Ret-II
           protein) [Canis familiaris]
          Length = 731

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 95/255 (37%), Gaps = 12/255 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSG 445
            E +       +   +++      +N +  +  R   ++A  + +R     +K + E   
Sbjct: 355 HEADATRKREQESYKQIQSEFAARLNKM--EVERQNLAEAVTLAERKYSDEKKRVDELQQ 412

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             + +K N     Q+    +   + +++ K     SL+E +    L +  A   E  +  
Sbjct: 413 QVKVYKSNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSSTANSMELEELR 472

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +      E+QKL   +     E +    +++ +        E L+ L  Q+        
Sbjct: 473 HEKEMQKEEIQKLMGQIHQLRSELQDMEVQQVSEA---ESAREQLQDLQDQIAGQKASKQ 529

Query: 566 TTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             EA +   +Q +      LY+    L  + ++ E++I ++  +   +  +       E+
Sbjct: 530 ELEAELERQKQEFHYIEEDLYRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNSSQ--SEL 587

Query: 625 HIQIHQIESQEAMIE 639
             ++HQ+   E +I+
Sbjct: 588 ENRLHQL--TETLIQ 600


>gi|317032748|ref|XP_001394332.2| hypothetical protein ANI_1_1804094 [Aspergillus niger CBS 513.88]
          Length = 884

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 89/286 (31%), Gaps = 12/286 (4%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P               I     +++ +  +           E    E+  KN +   +D+
Sbjct: 255 PQDTALLEQVKLLSAKIGTYEAMLEEVRGQLAAKTEQVNGMEERSDELRSKNQMLAARDE 314

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
           K +    + + ++L+Q   +            + + +   ++      +     +  +  
Sbjct: 315 KAKAAQQEDLINKLRQELDRVNCLLIMANGRARAHYKSDSREQTLANRVAELEKQLAMKT 374

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +       ++ +L     +  E+   +A  R    E QKL +       +       ++ 
Sbjct: 375 EADANSRGIIESLQAELQVRTEEANAIAS-RLVTVEAQKLRAAEEEVLRKDTE--IRQLQ 431

Query: 539 QRLCERGFG------ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
           +RL  +         EL    D+      L     E           QA   +     LS
Sbjct: 432 ERLQVQEDQSYERAMELSAAEDQLTSQDVLIHDLQERIRAQEATPQVQATEHHAAEEQLS 491

Query: 593 RQ---KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            Q     +++++I    A  + + T  L +    + +++ +I+  E
Sbjct: 492 SQAVLIHDLQERIRAQEAAPQVQATEELHAAEKVLQMKVAEIQDLE 537


>gi|296193134|ref|XP_002744377.1| PREDICTED: transcription elongation regulator 1-like isoform 4
           [Callithrix jacchus]
          Length = 1077

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 610 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 669

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 670 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 717

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 718 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 766

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 767 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 826

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 827 AKNLDSDKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 879


>gi|291319952|ref|YP_003515210.1| sugar ABC transporter permease [Mycoplasma agalactiae]
 gi|290752281|emb|CBH40252.1| Sugar ABC transporter Permease [Mycoplasma agalactiae]
          Length = 662

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 22/150 (14%)

Query: 509 RYDNNELQKLWSFLF-------SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
           +  NNE++K++  L         +     YF  ++I   L      +L  +L +   +  
Sbjct: 464 KLSNNEIEKIFQKLAKDKVSLNQELSRYGYFDIKDIKN-LKNVKLTQLKIELKKIQEELL 522

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSR--------------QKEEIEKQIAQVTA 607
                 E+ ++  +  Y Q      +   L +                 ++ KQ+    A
Sbjct: 523 ENYLFIESRLIFAQGLYDQKHYKIVKEHNLEQFKNELFYLYEDKKQMINDLHKQLKSAQA 582

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEAM 637
           + +AE    L + L +   ++ QI++  A 
Sbjct: 583 QNDAELVNKLSAELAKSQEELAQIKANYAA 612


>gi|289618791|emb|CBI54616.1| unnamed protein product [Sordaria macrospora]
          Length = 670

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
                 L+R+        A  E     + +    + +  ++  +L  + ++  ++ A++ 
Sbjct: 74  EPSAADLEREEAARAETLAIIEDLKERLSKAEASSESHKRQMDILQSRLDDATREQAKLE 133

Query: 607 AK--GEAEKTAILISILHEVHIQIHQIES 633
            K     E+   L +   E+  Q+ ++ES
Sbjct: 134 EKVHENEEQIEALKNEKREISRQMREMES 162


>gi|255945211|ref|XP_002563373.1| Pc20g08500 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588108|emb|CAP86179.1| Pc20g08500 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1141

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 2/118 (1%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
              +     +QK      +  R       +   Q  R  +D  +     E +   +R   
Sbjct: 726 RDIIADLQRQQKDIEQSLVTARSRVEACKQASAQHVRTEKDLQIQMQRMEDHAEGLRDAL 785

Query: 579 QQALALYKRFRLLSRQKEEIE--KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +  A   R   L    +E E  KQ+ + + K         +  L E+  ++   +S+
Sbjct: 786 DKENAEDGRIDALLAALKEAEDEKQLNEGSYKDSEAAMKATLQTLKEIRRELSAKDSE 843


>gi|149577667|ref|XP_001516640.1| PREDICTED: similar to sodium channel associated protein 2, partial
           [Ornithorhynchus anatinus]
          Length = 812

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 40/353 (11%), Positives = 110/353 (31%), Gaps = 37/353 (10%)

Query: 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382
            +     A       ++  L       +      +     I+   K A E+  + S+ + 
Sbjct: 231 ENTTSREAEESTYKALVQELDQERERRWKAEQTEKRLSDQIKELQKQAREEKDLHSITVT 290

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
                +E   +  N   +   +    +N    + ++  +    +  + R+ +  ++ +++
Sbjct: 291 TTDRLKELVFKERNAKMKLQAIIQKFQNASEKLTNELNQSRLKEEEQQRILRDLEEKLSK 350

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA-----ALLLTL------ 491
                   + +   R Q+   +       ++         +E       +L         
Sbjct: 351 METQRVQQQASEMKRVQELELKTSATERELQILRVSLRQQKEKVQQLHEILALKEQQHRK 410

Query: 492 -------INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                  +N         +E+A     + +  K +    +   +Q   L  E    L   
Sbjct: 411 ELESRVTLNGSDFKDALAKEIAKEEKRHEQHVKEFQQKINTLNQQYLELENEFRIALTIE 470

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE------- 597
                 K++     +     A  +  +   +Q  +Q   L +    + ++++        
Sbjct: 471 AKR--FKEVKDGFENVATELAKNKHALAQAQQKEKQTSTLIQDLTSIVKEQKAKIAEVSQ 528

Query: 598 --------IEKQIAQVTA--KGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
                   ++K+I  +    + + EKT  +  +  E    I Q+ +QE++I+G
Sbjct: 529 SKLEATSNLKKRIQTLETMVEEDKEKTIQVELLKQEKSQLISQLTAQESIIDG 581


>gi|148234933|ref|NP_001085661.1| serine/threonine-protein kinase TAO2 [Xenopus laevis]
 gi|78099181|sp|Q6GPK9|TAOK2_XENLA RecName: Full=Serine/threonine-protein kinase TAO2; AltName:
           Full=Thousand and one amino acid protein 2
 gi|49118135|gb|AAH73108.1| MGC83604 protein [Xenopus laevis]
          Length = 1025

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 97/310 (31%), Gaps = 36/310 (11%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD--- 417
             ++ Y       L+       ++  ++          +   +L     N     +D   
Sbjct: 589 ESMQHYQAEEEANLLRRQRQYFELQCRQYKRKMLLARHNLDQDLLREELNKKQTQRDLEC 648

Query: 418 -QKLRYY-YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
              LR +  +Q +  R  QL Q   +E        +   +    K   Q L Q    + +
Sbjct: 649 AMLLRQHECTQELEFRHLQLLQHTRSELIRMQHQTELGNQLEYNKRREQELRQKHAAEVR 708

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              K    +   +                    +    + + L + L     + ++    
Sbjct: 709 QQPKSLKSKELQIKRQFQD------------TCKIQTRQYKALRNHLLETTPKSEHKSIL 756

Query: 536 EIHQRLCERGFGELLKQLDRQVRD-----AGLWSATTEANIVDVRQGYQQALALYKRFRL 590
           +  +    R    L +Q D  + +     A     T EA   ++R   Q+ L L   ++ 
Sbjct: 757 KRLKDEQTRKLAILAEQYDHSINEMLSTQALRLDETQEAEYQELRIQLQKELELLNAYQS 816

Query: 591 L---------SRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
                      R+ +E+E+++     +  +   E+   L +   E    + + +++E  I
Sbjct: 817 KIKIHTDAQHERELKELEQRVSIRRALLEQRIEEEMLALQTERSERIRSLLERQARE--I 874

Query: 639 EGFGKMSGRL 648
           E F   S RL
Sbjct: 875 EAFDSESMRL 884


>gi|332251191|ref|XP_003274731.1| PREDICTED: myosin-1 [Nomascus leucogenys]
          Length = 1939

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1565 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHIRIVESMQSTLDAEIRSRNDAIRLKKKMEG 1624

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1625 DLNEMEIQLNHANRMAAEALRNYRNTQAILKDTQLHLDDAL-----RSQEDLKEQ--LAM 1677

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1678 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1737

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1738 ISQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1797

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1798 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1829


>gi|327268339|ref|XP_003218955.1| PREDICTED: dystrophin-like [Anolis carolinensis]
          Length = 3722

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 101/290 (34%), Gaps = 43/290 (14%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI---NHIKDQKLRYYYSQA 427
            +  +   +   +++L   +    +F+         ++        + I+  + R    + 
Sbjct: 1683 WIAVTSRAEEWLNLLLTYQKSMETFDQNVANITTWMYRTEIFLDESEIQRPEQREETLKR 1742

Query: 428  IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            ++  L  + +  +           KN     +K    +L + +     +S++    E  L
Sbjct: 1743 LKTELNDM-RPKVDSVRDQAVDLMKNRGDHCRKVIEPKLTELNQRFTAISERIKS-EKPL 1800

Query: 488  LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG-- 545
            +              +EL    +   ++QKL   L ++  +      E+ ++ + E    
Sbjct: 1801 VPL------------KELDQFNF---DIQKLLGPLEAEIQQGVNLKEEDFNKDMSEDDEV 1845

Query: 546  -FGELLKQLDRQVRDAGLWSATTEA------------NIVDVR-QGYQQALALYKRFRLL 591
               ELL + D   R         E              + D+R Q  ++AL +  ++   
Sbjct: 1846 TVKELLHRGDVLHRTITDERGKEEIKTKQQLLQTKHNALKDLRSQRRKKALEISHQWYQY 1905

Query: 592  SRQ-------KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             RQ        ++IEK+IA +    + +K   +   L +   +++ ++ Q
Sbjct: 1906 KRQADDLMKWLDDIEKKIATLPDPQDEQKLKEIDRELEKKKEELNAVQRQ 1955



 Score = 38.3 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 28/275 (10%), Positives = 85/275 (30%), Gaps = 19/275 (6%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                F   + E+    ++L     + +         EL    +     I+     ++   
Sbjct: 2716 DLEKFLAWLTEAETTANVLQDATHKEKILEDAQGVRELMKQWQELQKEIETHTDIFHSLD 2775

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
                ++ +  +          R    N R  + +  S  +           ++  L    
Sbjct: 2776 ENGQKILRSLEGSDDAALLQRRLDNMNFRWSELRKKSLNIRSHLEASSDQWRRLHLSLQE 2835

Query: 487  LLLTL-INHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            LL  L +    + Q+     +L  ++  N+  +     L +     K  +     + +  
Sbjct: 2836 LLAWLQLKEDELKQQEPIGGDLPTVQKQNDIHRAFKRELKA-----KEPVISSALETVRI 2890

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                + L+ L++   ++       E    +  Q   +   L ++   +  + +++   + 
Sbjct: 2891 FLAEQPLEGLEKLYHESR------ELPPGERAQNVTRL--LRRQADEVKTEWDKLN--LQ 2940

Query: 604  QVTAKGEAEKTAILISILHEVHIQIH-QIESQEAM 637
                + + ++    +  L E   ++  ++   EA+
Sbjct: 2941 SADWQKKIDEALERLQELQEAMDELDLKLRQAEAI 2975


>gi|308469176|ref|XP_003096827.1| CRE-UNC-15 protein [Caenorhabditis remanei]
 gi|308241398|gb|EFO85350.1| CRE-UNC-15 protein [Caenorhabditis remanei]
          Length = 872

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 89/273 (32%), Gaps = 23/273 (8%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D   +            E+          +      +   +R  L+    + +  + DQK
Sbjct: 163 DQLQKDKHTAEKAAERFEAQANELANKVEDLGKHVNDLAQQRQRLQAENNDLLKEVHDQK 222

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           ++    Q ++  L Q  ++         R   +      Q       ++++L +  +++ 
Sbjct: 223 VQLDNLQHVKYTLAQQLEEARRRLEDAERERSQLQSQLHQVQLELDSVRTALDEESVARS 282

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +          + +  I Q + +  A++   + E++ L   +     E           
Sbjct: 283 DAEH-----KLNLANTEITQWKSKFDAEVALHHEEVEDLRKKMLQKQAEY---------- 327

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              E     +L+++ +  +      +  E  IVD+ +       L +    L RQ  E++
Sbjct: 328 ---EEQIEIMLQKISQLEKAKSRLQSEVEVLIVDLEKAQNTIAILERAKEQLERQVGELK 384

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +I ++  +            L   + ++ +++
Sbjct: 385 VRIDELNVE-----LEAAQRELRAANAELQKMK 412


>gi|296193132|ref|XP_002744376.1| PREDICTED: transcription elongation regulator 1-like isoform 3
           [Callithrix jacchus]
          Length = 1077

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 610 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 669

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 670 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 717

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 718 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 766

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 767 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 826

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 827 AKNLDSDKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 879


>gi|148554068|ref|YP_001261650.1| ATP-dependent protease La [Sphingomonas wittichii RW1]
 gi|148499258|gb|ABQ67512.1| ATP-dependent protease La [Sphingomonas wittichii RW1]
          Length = 801

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 54/156 (34%), Gaps = 14/156 (8%)

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            +  + Q L  +       Q L   + +             +  +       +L+ +  Q
Sbjct: 151 FINLRNQALETVSLLPQAPQGLADAIRTIAAPGALADLTAAYLDIGADDKQGILETIALQ 210

Query: 557 VRDAGLWSATTEANI-----VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            R   + +   +         ++ +G Q+ L   +R  LL  Q  EI++Q+ +    G +
Sbjct: 211 PRLDKVMALLAQRLEVLRLSAEIGKGVQEKLGTRQREHLLREQMAEIQRQLGEDD--GNS 268

Query: 612 EKTAILISIL------HEVHIQI-HQIESQEAMIEG 640
            + A L   +       EV  Q   ++   E M +G
Sbjct: 269 AEIAELREAIAKAGMPEEVEKQATKELRRLERMPDG 304


>gi|73967056|ref|XP_537750.2| PREDICTED: similar to myosin 18A isoform b isoform 1 [Canis
            familiaris]
          Length = 1708

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 38/349 (10%), Positives = 91/349 (26%), Gaps = 31/349 (8%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 1130 RRFDSELSQAHEEAQREKLQREKLQREKDTLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 1189

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1190 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1249

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E+ L   
Sbjct: 1250 RMRQTHSKEVESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELESKLTTL 1308

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1309 SEQVSQRDLESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQLKNQLEESEFT- 1367

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1368 ----CAAAVKARKAMEVEMEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQSRLEEDQED 1423

Query: 609  GE-----------------------AEKTAILISILHEVHIQIHQIESQ 634
                                       +         E+  ++  ++SQ
Sbjct: 1424 MNELMKKHKAAVAQASRDLAQMNDLQAQLEEANKEKQELQEKLQALQSQ 1472



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1448 LQAQLEEANKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFER 1504

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1505 TQVKRLESLASRLKENMEKLTEERDQRTAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1564


>gi|75908420|ref|YP_322716.1| hypothetical protein Ava_2201 [Anabaena variabilis ATCC 29413]
 gi|75702145|gb|ABA21821.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 690

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 31/276 (11%), Positives = 85/276 (30%), Gaps = 22/276 (7%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-RYY 423
            +   A + L  E   + D   K+    +     +               IK +   +  
Sbjct: 190 RHLGEAKKSLENELKAIGDSEIKQLLREQEKLEQEIERIHTRQT-----EIKQELEYQQT 244

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK--LSKKPS 481
           + +   +RLQ+L      +        +KN+     +   + L +    +G   L    +
Sbjct: 245 FKKETGNRLQELSAAKELQQRRQELENQKNSNQESLRQTRESLKKIISARGYTVLLSDTT 304

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQ 539
            +   ++  L     +     +      + +  L+       ++  E  +          
Sbjct: 305 AQFRTIINQLKQQGDLTSGISR-----EFIHELLKSQRCICGAELHEGNHAHTNVSLWLN 359

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           +       E   ++  QV +    +      +   +    Q   L +    +  + E I+
Sbjct: 360 QAGSSAVEETAIRMSAQVDEIDKQAIVFWEEVDKEQARINQ---LRQNISQVENELETIQ 416

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +++ +       E+ + L   L E+  +I ++  ++
Sbjct: 417 ERLRKDAN----EEISSLQKRLDEIESKIDELNREQ 448


>gi|71667096|ref|XP_820500.1| OSM3-like kinesin [Trypanosoma cruzi strain CL Brener]
 gi|70885848|gb|EAN98649.1| OSM3-like kinesin, putative [Trypanosoma cruzi]
          Length = 854

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 87/267 (32%), Gaps = 29/267 (10%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           +L   + +      +   +  D+       L + I  + D  +   + + +   + +  +
Sbjct: 450 NLDAHEAVMYAGMLSNLHDAVDKAQTHRNRLLDAIAALPDTPV--NFKEELSKLVSENDE 507

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
                           AR  +++  +            + K+   RE  LL  +      
Sbjct: 508 LRKMYKDAIKVTETAQARVVEEQRRTVSEESVQAQIDSVRKEYEARERELLAAM------ 561

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDR 555
                     +  ++ + + +   L +        + E   + +        E   + ++
Sbjct: 562 ---------KLDENSGDGKAVL-ALLNKNASGGGAVSEAAQKEIESLRSDLEEERVKCEK 611

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            V+         +A   +V +   + + L  +   ++    + E+Q+    A G  EK A
Sbjct: 612 LVQSKEAQQVELKALRQEVAESESRYVDLEGK---MNEMVSDYERQL--ANAHGSTEKIA 666

Query: 616 ILISILHEVHIQIHQI----ESQEAMI 638
            L + L E   Q+ Q+    E Q+A+I
Sbjct: 667 DLTARLKERTDQLDQMRGLLEKQKALI 693


>gi|325687263|gb|EGD29285.1| cell division protein Smc [Streptococcus sanguinis SK72]
          Length = 1178

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 45/373 (12%), Positives = 108/373 (28%), Gaps = 59/373 (15%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             I    D +        +  D+    +  G   +   +      +       +      
Sbjct: 102 RHIYRSGDSEYKIDGKKVRLRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIF 161

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK---------------DQK 419
              +  L     ++ETE++   T D    LE  +    + +K               D +
Sbjct: 162 EEAAGVLKYKTRRKETESKLSQTQDNLDRLEDIIYELESQVKPLEKQVETAKRFLSLDGQ 221

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y   +  +L    +K I          ++ A +  ++   +   Q+   K     +
Sbjct: 222 RRELYLDVLVAQLTANKEKLIKAEEDLTNIQQELAAYYGKRDELEVENQTLKAKRHELNQ 281

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDN-----------NELQKLWSFL--FSDF 526
               +     +L+    ++ +  +++   + ++             L  L   L      
Sbjct: 282 TLSDDQ---ASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLAQIESN 338

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           +E K     +I  +L +       + +     +   +S   +  I  +R+   Q + L +
Sbjct: 339 IEDKQAELSKIAAKLSDNE-----ESIAALEAELADFSDDPDQLIEHLRE---QYVKLMQ 390

Query: 587 RFRLLSRQKEEIEKQIA--------------------QVTAKGEAEKTAILISILHEVHI 626
               LS     +E Q+A                    + +   E      L      +  
Sbjct: 391 EEANLSNDLTSLESQLASELKLAESKKADYAKLQADLEASQTQEQAGLEELEIARQALKN 450

Query: 627 QIHQIESQEAMIE 639
            ++  +SQ  ++E
Sbjct: 451 LLNDYQSQIQLVE 463



 Score = 37.6 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 97/285 (34%), Gaps = 18/285 (6%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             +  +  ++V  L        +  E+ +    +  A      +  + +   +  R+  +
Sbjct: 221 QRRELYLDVLVAQLTANKEKLIKAEEDLTNIQQELAAYYGKRDELEVENQTLKAKRHELN 280

Query: 426 QAIRDRLQQLFQKYIT----EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Q + D    L +        E        + +     ++   +RL   S    ++     
Sbjct: 281 QTLSDDQASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLAQIESNIE 340

Query: 482 LREAALLLTLINHPAILQEQYQELADI-----RYDNNELQKLWSFLFSDFVE--QKYFLP 534
            ++A L          L +  + +A +      + ++   +L   L   +V+  Q+    
Sbjct: 341 DKQAELSKIAAK----LSDNEESIAALEAELADFSDDP-DQLIEHLREQYVKLMQEEANL 395

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                 L  +     LK  + +  D     A  EA+    + G ++     +  + L   
Sbjct: 396 SNDLTSLESQ-LASELKLAESKKADYAKLQADLEASQTQEQAGLEELEIARQALKNLLND 454

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +   + + ++ A  + ++T  +  +L ++  +  +  S EA+++
Sbjct: 455 YQSQIQLVEKLEADYKHQQT-KMFELLDDLKNKQARSNSLEAILK 498


>gi|324500211|gb|ADY40107.1| Myosin-XVIIIa [Ascaris suum]
          Length = 1685

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 37/387 (9%), Positives = 100/387 (25%), Gaps = 40/387 (10%)

Query: 254  ALNYLQK--SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLW 311
            A    ++            S    +         L       + ++    +       + 
Sbjct: 971  AKWLARRRTLDSAIRCIQRSGKCYIKVREWSWWRLYTKVTPLLAAARSDEVYREMETRIR 1030

Query: 312  KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371
            +L                   +   ++         +   L    E          +   
Sbjct: 1031 ELEAINNELRVSKSRVEGRVAELEQMLSAECSNTQSLGEALERETE-------HRLQAQK 1083

Query: 372  EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQAIRD 430
            + ++++     +      + +   N+          L   +  ++  +  +   +Q    
Sbjct: 1084 QLIVMQQRHFDEPRLSSSSSSHLDNSMVLSDAKTTELNKELETLRESEATQRTRAQKAIQ 1143

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            RL+ +  + +   +       +N R  ++       ++    K     + + RE      
Sbjct: 1144 RLRDVEGELLDLKARNEILEVRNTRFDEEVKA----VKEECAKENEGHEQARRERDTAAM 1199

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
            L+          +++ +++    E  +L   +             ++H+ L E G G  L
Sbjct: 1200 LLQ---------EKIDELQSVKAENAELRQSI------------AKLHKELEESGDGNDL 1238

Query: 551  KQ-----LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
            +      L R  R      A  E  + D+    Q       R  + + +      +    
Sbjct: 1239 QSGEVGQLKRAKRQLEAKCAEQEDELDDLAGRAQMLQQTLTRLEMAAERSRIERNRDLDA 1298

Query: 606  TAKGEAEKTAILISILHEVHIQIHQIE 632
                  E  A     L     Q+  ++
Sbjct: 1299 KEDEIEELRAQYQRRLRAFEEQLASLQ 1325


>gi|269216425|ref|ZP_06160279.1| ATP-dependent chaperone protein ClpB [Slackia exigua ATCC 700122]
 gi|269129954|gb|EEZ61036.1| ATP-dependent chaperone protein ClpB [Slackia exigua ATCC 700122]
          Length = 891

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/210 (10%), Positives = 81/210 (38%), Gaps = 2/210 (0%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R +++          +  +++    K ++     + ++A++       
Sbjct: 321 YRKYIEKDAALERRFQQVFIGEPTVEDTIAILRGLKEKYEIHHGVRITDSAIVAAAELSN 380

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-GELLKQLD 554
             + +++     I   +    +L   + S   E      +    ++ E+    E      
Sbjct: 381 RYISDRFLPDKAIDLMDEAASRLRIEIDSMPQEIDQAERKYTQMQIEEQALMKEEDAASQ 440

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            ++ +     AT++  +   +  ++    + +  + L  + ++   +  Q T +G+  + 
Sbjct: 441 ERLEELRRQMATSKEWLDARKAEWRNEKDVIESVQRLKTEIDQAHTEEEQATREGDLSRA 500

Query: 615 AIL-ISILHEVHIQIHQIESQEAMIEGFGK 643
           + +  + + ++  ++ + E+  A  +G G 
Sbjct: 501 SEIRYARIPDLQRRLAEAETAVAAKQGDGA 530


>gi|225849633|ref|YP_002729867.1| phosphodiesterase [Persephonella marina EX-H1]
 gi|225645450|gb|ACO03636.1| conserved hypothetical protein [Persephonella marina EX-H1]
          Length = 553

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 64/188 (34%), Gaps = 7/188 (3%)

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
           K    +  K   ++  +    K ++ ++   +   ++           E  ++  +I  +
Sbjct: 23  KATVGKTLKEKERKAEEIIKNKEEIEREARRKAEEIIK------EFEAEAKRKAEEIVRE 76

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
              L++    +    + ++    E+  +         L K L  +        A  E   
Sbjct: 77  AESLKQQQEIIIEKEILKRKQELEKELKS-EREELQNLEKTLMSREAQLEKRLARLEHRE 135

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            ++ + + +   L +  R + ++ EE E ++     +   E   I      E   ++ + 
Sbjct: 136 EELDKKWDEIKKLEEEIRSIQKEIEEKEAKLKAAEEQYMLELQRIASMTKEEAREELLRK 195

Query: 632 ESQEAMIE 639
             +EA +E
Sbjct: 196 VEEEAKLE 203


>gi|194246574|ref|YP_002004213.1| Replicative DNA helicase [Candidatus Phytoplasma mali]
 gi|193806931|emb|CAP18363.1| Replicative DNA helicase [Candidatus Phytoplasma mali]
          Length = 450

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 9/130 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K        E A+L  +  +P  +   Y  L    +   + + ++  +   F E+K   
Sbjct: 7   KKTLPFHFEAEQAILGIIFLYPQKMHFIYDVLYVEDFFEIKHRNIFKVMKDLFKEKKDID 66

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              +H  L ++   +     D++     L       + +   + Y + +    +   L R
Sbjct: 67  YISVHSLLKDKNISK-----DKEEDIDYLIDLVNLISDIKNLETYIELI----KEAALKR 117

Query: 594 QKEEIEKQIA 603
           +  E+   I 
Sbjct: 118 ELIEVSASIN 127


>gi|118404384|ref|NP_001072729.1| TAO kinase 2 [Xenopus (Silurana) tropicalis]
 gi|116487420|gb|AAI25704.1| TAO kinase 2 [Xenopus (Silurana) tropicalis]
          Length = 1027

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 97/310 (31%), Gaps = 36/310 (11%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD--- 417
             ++ Y       L+       ++  ++          +   +L     N     +D   
Sbjct: 589 ESMQHYQAEEEANLLRRQRQYFELQCRQYKRKMLLARHNLDQDLLREELNKKQTQRDLEC 648

Query: 418 -QKLRYY-YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
              LR +  +Q +  R  QL Q   +E        +   +    K   Q L Q    + +
Sbjct: 649 AMLLRQHECTQELEFRHLQLLQHTRSELIRMQHQTELGNQLEYNKRREQELRQKHAAEVR 708

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              K    +   +                    +    + + L + L     + ++    
Sbjct: 709 QQPKSLKSKELQIKRQFQD------------TCKIQTRQYKALRNHLLETTPKSEHKSIL 756

Query: 536 EIHQRLCERGFGELLKQLDRQVRD-----AGLWSATTEANIVDVRQGYQQALALYKRFRL 590
           +  +    R    L +Q D  + +     A     T EA   ++R   Q+ L L   ++ 
Sbjct: 757 KRLKDEQTRKLAILAEQYDHSINEMLSTQALRLDETQEAEYQELRIQLQKELELLNAYQS 816

Query: 591 L---------SRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
                      R+ +E+E+++     +  +   E+   L +   E    + + +++E  I
Sbjct: 817 KIKIHTEAQHERELKELEQRVSIRRALLEQRIEEEMLALQTERSERIRSLLERQARE--I 874

Query: 639 EGFGKMSGRL 648
           E F   S RL
Sbjct: 875 EAFDSESMRL 884


>gi|109114644|ref|XP_001103982.1| PREDICTED: peripheral-type benzodiazepine receptor-associated
           protein 1 [Macaca mulatta]
          Length = 1879

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 114/356 (32%), Gaps = 39/356 (10%)

Query: 326 PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV----ESLPL 381
               AA +  +L                  G DP+    C      +        +    
Sbjct: 44  DTPPAALQLPELRSEESSEPKGARSSGPIGGTDPEEAEACLPSLGQQASSSGPACQRPED 103

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHI-----KDQKLRYYYSQAIRDRLQQLF 436
            ++    + +           EL   L            ++Q LR        +++++L 
Sbjct: 104 EEVEAFPKAKLNMGFGDRPNLELLRALGELRQRCAILKEENQMLRKSSFPETEEKVRRLK 163

Query: 437 QKYITEHSGYGRYWKKNARHRDQK-GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +K         R  ++  + ++         +       +L +K   R+ A    L    
Sbjct: 164 RKNAELAVIAKRLEERARKLQETNLRVVSAPLPRPGASLELCRKALARQRA--RDLSETA 221

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
           + L  + +++A ++    E ++L + L     E   +L      RL      E+L +L R
Sbjct: 222 SALLAKDKQIAALQ---RECRELQARLTLVGKEGPQWLHVRDFDRLLRESQREVL-RLQR 277

Query: 556 QV--------------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           Q+                      A   +    A      Q     L +        ++ 
Sbjct: 278 QIALRNQRETPPRPPSRPPGPALPARAEAPAPGAPGEATPQEDADNLPVILGEPEKEQRV 337

Query: 596 EEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEA-MIEGFGKMSGRL 648
           +++E ++++   K E   ++         E+ +Q+ + +++ A ++E   ++SGR+
Sbjct: 338 QQLESELSKKRKKCESLEQEARKKQRRCEELELQLREAQNENARLVEENSRLSGRV 393


>gi|57160749|emb|CAI39566.1| dystrophin [Homo sapiens]
 gi|57208229|emb|CAI42229.1| dystrophin [Homo sapiens]
 gi|57208477|emb|CAI42950.1| dystrophin [Homo sapiens]
 gi|57208496|emb|CAI42225.1| dystrophin [Homo sapiens]
 gi|57208794|emb|CAI42991.1| dystrophin [Homo sapiens]
 gi|57284025|emb|CAI43058.1| dystrophin [Homo sapiens]
 gi|94963113|gb|AAI11588.1| DMD protein [synthetic construct]
 gi|108752158|gb|AAI11837.1| DMD protein [synthetic construct]
 gi|108752180|gb|AAI11935.1| DMD protein [synthetic construct]
 gi|109073219|gb|AAI18003.1| DMD protein [synthetic construct]
          Length = 3685

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 52/450 (11%), Positives = 127/450 (28%), Gaps = 34/450 (7%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 2529 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 2584

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 2585 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 2644

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2645 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 2703

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 2704 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 2763

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2764 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 2823

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2824 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGL- 2881

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                       L+    E    +  Q   +   L K+   ++ + E++   +     + +
Sbjct: 2882 ---------EKLYQEPRELPPEERAQNVTRL--LRKQAEEVNTEWEKLN--LHSADWQRK 2928

Query: 611  AEKTAILISILHEVHIQIHQIESQEAMIEG 640
             ++T   +  L E   ++     Q  +I+G
Sbjct: 2929 IDETLERLRELQEATDELDLKLRQAEVIKG 2958



 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L +  +K   +     +  K        K  S R   ++L+  +      L E  +   
Sbjct: 1701 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 1760

Query: 491  -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                  I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 1761 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 1820

Query: 546  ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                 ELL++ D   +         E  I                        +   Q  
Sbjct: 1821 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 1880

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1881 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 1932


>gi|297690337|ref|XP_002822577.1| PREDICTED: centrosomal protein of 164 kDa-like isoform 1 [Pongo
           abelii]
          Length = 1459

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 83/293 (28%), Gaps = 51/293 (17%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                      ++ I  S            E       ++           +      +L
Sbjct: 714 EQKHRQMLEQLKEEIEASEKSEQAALNAAKEKALQQLREQLEGERKEAVAALEKEHSAEL 773

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                    +RL  L +    E     +   + A+ +++    + L Q      + +   
Sbjct: 774 ---------ERLCSLLEAKHREVVSSLQKKIEEAQQKEEAQLQKCLGQVEHRVHQKAYHV 824

Query: 481 SLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           +  E  L   L      ++ E  + L  ++    E Q++ +     +  ++     E+  
Sbjct: 825 AEYEHELSSLLREKRQEVEGEHERRLDKMK---EEHQQVMAKAREQYEAEERKQRAELLG 881

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L        L++L R                    +  +Q    +KR   L R+  E E
Sbjct: 882 HLTGE-----LERLQR--------------AHERELETVRQEQ--HKRLEDLRRRHREQE 920

Query: 600 KQIAQVTAKGE----------------AEKTAILISILHEVHIQIHQIESQEA 636
           +++  +    E                 E        L +V  Q+  ++S+EA
Sbjct: 921 RKLQDLELDLETRAKDVKARLALLEVQEETARREKQQLLDVQRQV-ALKSEEA 972


>gi|294790548|ref|ZP_06755706.1| ATP-dependent chaperone protein ClpB [Scardovia inopinata F0304]
 gi|294458445|gb|EFG26798.1| ATP-dependent chaperone protein ClpB [Scardovia inopinata F0304]
          Length = 879

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 44/135 (32%), Gaps = 12/135 (8%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGLWSA 565
            I   +     L   L     + +    +E+ +R+      E+ LK+ +       L   
Sbjct: 392 AIDLVDEAAAHLRMEL-----DSEPEEIDELQRRVTRLEMEEMQLKKAEDTASKERLEKI 446

Query: 566 TTEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI-LIS 619
            +E          +   +    A   +   L  + + +  Q  + T +G  E  +  L  
Sbjct: 447 QSELADAREKLAGLNTRWSAEKADRNKVGDLRAKLDSLRVQADKATREGNLESASKILYG 506

Query: 620 ILHEVHIQIHQIESQ 634
            + E+  Q+   E+ 
Sbjct: 507 DIPEIQKQLAAAENT 521


>gi|300795444|ref|NP_001179691.1| myosin, heavy chain 9, non-muscle [Bos taurus]
          Length = 1965

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 88/265 (33%), Gaps = 28/265 (10%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EKL ++     +     E E        ++ ELE    +    +++++ R  + QA + 
Sbjct: 880  AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKK 939

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++QQ  Q+   +        +K    +       + ++   +  +       +E  LL  
Sbjct: 940  KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCKLAKEKKLLE- 998

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +                      E    +L 
Sbjct: 999  -----DRIAEFTTNLMEEEEKSKSLAKLKNK--------------------HEAMITDLE 1033

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L R+ +       T      D      Q   L  +   L  Q  + E+++    A+ E
Sbjct: 1034 ERLRREEKQRQELEKTRRKLEGDSTDLNDQIAELQAQIAELKMQLAKKEEELQAALARVE 1093

Query: 611  AEKTAILIS--ILHEVHIQIHQIES 633
             E T   ++   + E+  QI +++ 
Sbjct: 1094 EETTQKNMALKKIRELESQISELQE 1118



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 70/228 (30%), Gaps = 15/228 (6%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            + ++ +    + +R+   +L  +            K     +D +       ++     K
Sbjct: 1579 QSEEKKKQLVKQVREMEAELEDERKQRSIAVAARKKLEMDLKDLEAHIDSANKNRDEAIK 1638

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +K   +    +  L         + + LA  + +  +L+ + + +     E       
Sbjct: 1639 QLRKVQAQMKDYMREL---DDTRASREEILAQSKENEKKLKSMEAEMIQLQEELAAAERA 1695

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +   +   EL  ++        L           + Q  ++         L++ + 
Sbjct: 1696 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELVNDRL 1752

Query: 596  EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIESQ 634
            ++   QI Q+      E++           L     E+ +++ ++E  
Sbjct: 1753 KKANLQIDQLNTDLNLERSHTQKNENARQQLERQNKELKVKLQEMEGT 1800


>gi|119587723|gb|EAW67319.1| centrosomal protein 164kDa, isoform CRA_b [Homo sapiens]
          Length = 1463

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 82/293 (27%), Gaps = 51/293 (17%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                      ++ I  S            E       ++           +      +L
Sbjct: 718 EQKNRQMLEQLKEEIEASEKSEQAALNAAKEKALQQLREQLEGERKEAVATLEKEHSAEL 777

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                    +RL    +    E     +   + A+ +++    + L Q      + S   
Sbjct: 778 ---------ERLCSSLEAKHREVVSSLQKKIQEAQQKEEAQLQKCLGQVEHRVHQKSYHV 828

Query: 481 SLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           +  E  L   L      ++ E  + L  ++    E Q++ +     +  ++     E+  
Sbjct: 829 AGYEHELSSLLREKRQEVEGEHERRLDKMK---EEHQQVMAKAREQYEAEERKQRAELLG 885

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L        L++L R                    +  +Q    +KR   L R+  E E
Sbjct: 886 HLTGE-----LERLQR--------------AHERELETVRQEQ--HKRLEDLRRRHREQE 924

Query: 600 KQIAQVTAKGE----------------AEKTAILISILHEVHIQIHQIESQEA 636
           +++  +    E                 E        L +V  Q+  ++S+EA
Sbjct: 925 RKLQDLELDLETRAKDVKARLALLEVQEETARREKQQLLDVQRQV-ALKSEEA 976


>gi|121701239|ref|XP_001268884.1| intracellular protein transport protein (UsoA), putative
           [Aspergillus clavatus NRRL 1]
 gi|119397027|gb|EAW07458.1| intracellular protein transport protein (UsoA), putative
           [Aspergillus clavatus NRRL 1]
          Length = 1048

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 54/162 (33%), Gaps = 4/162 (2%)

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL----WSFLFSDFVEQKYFL 533
           K   LRE+ L+      P  +   +       + +          +  L      +  F 
Sbjct: 603 KITRLRESPLVRDFEVLPQTVGGLFDAGLPEIFFDRTFIDFLKDNFGRLIRAIDREPGFE 662

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              I   +      EL+  L   + +        E++I+ +R  ++Q    +++ + LS 
Sbjct: 663 VSIITNGVQRGISRELVDSLRADLEERSELVQKLESDILSLRNKFEQEQIEHRKTKELSS 722

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +    +QI     +   ++ + L         ++ +   ++
Sbjct: 723 SEASKIQQINASLQRHHEQELSALEEQHQHAKKELLKQHGEQ 764


>gi|111308130|gb|AAI21671.1| homer3 protein [Xenopus (Silurana) tropicalis]
          Length = 371

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/208 (9%), Positives = 66/208 (31%), Gaps = 16/208 (7%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             RL +   +  T+ +                  +       L + + ++     E   +
Sbjct: 128 AARLARERSQDKTDLTNPALNITSQQVLPSPIISANGPGDDKLFRSQSAEMELSTERERV 187

Query: 489 LTLINHPAILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
             +++  ++ + Q++      + +  +   KL + L       + +  +    +      
Sbjct: 188 KKMLSEGSVCEVQWEA----EFFSLQDNNNKLVAALREANANVEKWKKQLAAYQEEAETL 243

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            + + +L+ Q         T E    ++    +    L K         +E    + ++ 
Sbjct: 244 RQRVAELESQTLK-----ETNEEPGDELALRLKDLETLLKTKEEEILLLKEQRPDLMELE 298

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
           ++ +      L+  L E+  +  ++E +
Sbjct: 299 SERDK-----LLQRLQELEERNQEMEKE 321


>gi|160425231|ref|NP_001104237.1| myosin-9 [Canis lupus familiaris]
 gi|122135145|sp|Q258K2|MYH9_CANFA RecName: Full=Myosin-9; AltName: Full=Myosin heavy chain 9; AltName:
            Full=Myosin heavy chain, non-muscle IIa; AltName:
            Full=Non-muscle myosin heavy chain IIa; Short=NMMHC II-a;
            Short=NMMHC-IIA
 gi|89994139|emb|CAJ31056.1| myosin, heavy polypeptide 9, non-muscle [Canis lupus familiaris]
          Length = 1960

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 88/265 (33%), Gaps = 28/265 (10%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EKL ++     +     E E        ++ ELE    +    +++++ R  + QA + 
Sbjct: 880  AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKK 939

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++QQ  Q+   +        +K    +       + ++   +  +       +E  LL  
Sbjct: 940  KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCKLAKEKKLLE- 998

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +                      E    +L 
Sbjct: 999  -----DRIAEFTTNLMEEEEKSKSLAKLKNK--------------------HEAMITDLE 1033

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L R+ +       T      D      Q   L  +   L  Q  + E+++    A+ E
Sbjct: 1034 ERLRREEKQRQELEKTRRKLEGDSTDLNDQIAELQAQIAELKMQLAKKEEELQAALARVE 1093

Query: 611  AEKTAILIS--ILHEVHIQIHQIES 633
             E T   ++   + E+  QI +++ 
Sbjct: 1094 EEATQKNMALKKIRELESQISELQE 1118


>gi|19343976|gb|AAH25422.1| Cut-like homeobox 1 [Homo sapiens]
          Length = 676

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 98/282 (34%), Gaps = 16/282 (5%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 101 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 161 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 220

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 221 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 280

Query: 554 DRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQI 602
            ++               +  A  E  I  + +  Q+  A   + R  S  Q  ++E+Q+
Sbjct: 281 IQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQL 340

Query: 603 AQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           +   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 341 SAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 382


>gi|73972041|ref|XP_532047.2| PREDICTED: similar to centrosomal protein 1 [Canis familiaris]
          Length = 2589

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 39/380 (10%), Positives = 103/380 (27%), Gaps = 35/380 (9%)

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
           Q  ++  ++          L         I    D      ++ YK         I  N 
Sbjct: 349 QYEMEQELAFYKIDAKFEPLNYYPSEYVEIDKTPDESPYIGKSRYKRNMFTTESYIIANA 408

Query: 348 VNFVLLSRGEDPDSFIRCYG------KTAFEKLIVESLPLVDMLWKRETENRSFNTPDER 401
               +     D    +R          T  +    E           E  +       + 
Sbjct: 409 QTVKIKKMELDEGEQLRNEHVNLGASPTDIQLEDKEKKISAAQTRLSELHDEIEKAEQQI 468

Query: 402 AELEIHLKNCINHIK----DQKLRYYYSQAIRDRLQQL--FQKYITEHSGYGRYWKKNAR 455
                  K     I+     +  +    + +  R+Q L   ++   +        ++   
Sbjct: 469 LRATEEFKQLEEAIQLKKISEAEKDLLFKQLSGRIQLLNKLRQEAVDLETQMEKQRQEIG 528

Query: 456 HRDQKGPSQRLMQSSLVKGKLS-----KKPSLREAALLLTLINHPAILQEQYQELADIRY 510
            +  +     ++  SL            +   +E  L +    +  +     + L+ I  
Sbjct: 529 EKQNEIKDLEIVTDSLDSRDPKHCHMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAK 588

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
           +  E++ L   L    +     L +++   +   G  E L+ +  Q R A       +  
Sbjct: 589 ETEEIKDLEEQLTEGQIAANEALKKDLESVIS--GLQEYLETVKGQARQAQNECRKLQDE 646

Query: 571 IVDVRQGYQQALALYKRFRLL-------SRQKEEIEKQIAQVTA--------KGEAEKTA 615
              + Q   +      +  ++        ++  E+E  + +           +G+     
Sbjct: 647 KETLLQRLSEVEQERDQLEIVAIDAENMRKELAELENALQEQHEVNISLQQTQGDLSAYE 706

Query: 616 ILISILHEVH-IQIHQIESQ 634
             +    ++   + +Q++ +
Sbjct: 707 AELEAQLKIRDAEANQLKEE 726


>gi|11498824|ref|NP_070053.1| hypothetical protein AF1225 [Archaeoglobus fulgidus DSM 4304]
 gi|24638391|sp|O29043|Y1225_ARCFU RecName: Full=Uncharacterized protein AF_1225; Flags: Precursor
 gi|2649363|gb|AAB90025.1| predicted coding region AF_1225 [Archaeoglobus fulgidus DSM 4304]
          Length = 212

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 50/129 (38%), Gaps = 9/129 (6%)

Query: 512 NNELQKLWS---FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
              L+++++    L    V +     +     L +     L K+++       +     E
Sbjct: 64  TPGLKEVYADGSVLAQIDVNETTIDYQAYAASLEKENLA-LQKEVESLKEKLKISQEQIE 122

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                +     +A  L  +  L  +Q EE++K++ +   + + +K+      L E+  +I
Sbjct: 123 TLKSQLEDLQNKAKMLGIQNELQKQQIEELQKKLERAKTELQKKKSD-----LDELEEKI 177

Query: 629 HQIESQEAM 637
            ++  Q ++
Sbjct: 178 RELNRQSSI 186


>gi|307611350|emb|CBX01011.1| Dot/Icm T4SS effector [Legionella pneumophila 130b]
          Length = 1296

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 90/274 (32%), Gaps = 38/274 (13%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
             +    + I +   L D   +   +     T           K   +  +  + +    +
Sbjct: 873  HQEETIERITKEKSLADSALESLRKEMHELTRKNEENQLKLTKQVHSLSEQLEEKQLQIR 932

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ----KGPSQRLMQSSLVKGKLSKKPSL 482
                +LQ+  ++            +  A  R+Q    K   Q+L +    K K S   S 
Sbjct: 933  EFEKQLQEKEKRVEQSEKEKASEKRTVASLREQVSNLKLQLQQLGEVIQEKEKGSSLISQ 992

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            +   ++        I++EQ ++L +++    ++Q+L S       + +    E +H +  
Sbjct: 993  QSKQIIAL----QEIVEEQKRQLEELKI---KIQELVSANQELGKQNQSLSKENLHNKNT 1045

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                 + L +L+ Q+      S+  E  I  +R+                         I
Sbjct: 1046 VEDLKKKLTELNVQLEQLHQSSSEKEQTIRKLREEL-----------------------I 1082

Query: 603  AQVTAKGEAEKTAILISILHE----VHIQIHQIE 632
             + ++  + E+  +    L E    +  +I Q +
Sbjct: 1083 KKDSSLKQNEEMQLAQKHLQEEIDRLQKEIKQQQ 1116



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 84/226 (37%), Gaps = 22/226 (9%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           +    ++ +L +  I+  S   +   +           +   Q      + S+       
Sbjct: 621 KKTAGQIDELQKIVISLQSKIKKQTIEFEELEATLIQIKEKYQLLEKMAEQSEHEKSSAQ 680

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
           +++ +L      L+ Q QE   +++    L++L   +       K    E   Q+     
Sbjct: 681 SIIRSLNLELGQLKLQLQEQEKLQFQ---LKELKEKIHEQTTLSKRLGEELQTQKKTNTH 737

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             E ++++ +   +  L  ++ E+   ++ +  ++  +L+K       Q +E+E+Q+A+ 
Sbjct: 738 QEETIQRITK---EKSLADSSLESLRKELHELAKKERSLHKTLEEKQLQVQELEEQLAEK 794

Query: 606 TAKG----------------EAEKTAILISILHEVHIQIHQIESQE 635
             +                 +      L S L+++ +++ + E+ E
Sbjct: 795 EKENLALKKADKQSQHEKSLDKSAIESLTSELNQLKLELQKQETLE 840


>gi|300825293|ref|ZP_07105376.1| phage tail tape measure protein, lambda family [Escherichia coli MS
           119-7]
 gi|300522239|gb|EFK43308.1| phage tail tape measure protein, lambda family [Escherichia coli MS
           119-7]
          Length = 1047

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 5/122 (4%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L + L +   +           ++    F    +++    R+    +           + 
Sbjct: 116 LAAALRNLEQQHDELNAAFASGKINGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQ 175

Query: 578 YQQALALYKRFRLLS---RQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIE 632
                 L  +   +     +  E +KQ+ +  AKG    E    L   L  +  ++   +
Sbjct: 176 VVALQRLIAQLDPVGTAFNRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEVTQ 235

Query: 633 SQ 634
           SQ
Sbjct: 236 SQ 237


>gi|302774240|ref|XP_002970537.1| hypothetical protein SELMODRAFT_231598 [Selaginella moellendorffii]
 gi|300162053|gb|EFJ28667.1| hypothetical protein SELMODRAFT_231598 [Selaginella moellendorffii]
          Length = 865

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 75/210 (35%), Gaps = 16/210 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KY+ + +   R +++          +  +++    K +L     + + AL+   I   
Sbjct: 306 YRKYLEKDAALERRFQQVYVAEPAVEDAISILRGLREKYELHHGVKISDNALVEAAILSS 365

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI--------HQRLCERGFG 547
             + +++     I   +    KL     S            I         +   ++   
Sbjct: 366 RYISDRFLPDKAIDLVDEAAAKLKMERTSKPTALDEIDRVIIKLEMERLSVEHDNDKASR 425

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E L++L+ ++          +     ++Q ++   ++  R   +  + + +  +I Q   
Sbjct: 426 ERLQKLEAELASL-------KEKQKALQQQWEMEKSIMTRINSIKEEIDRVNLEIQQAER 478

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEA 636
             +  + A L   +L  +  Q+++ E + A
Sbjct: 479 DYDLNRAAELKYGVLTNLQKQLNEAEGELA 508


>gi|254952729|gb|ACT97165.1| heat shock protein [Vitis labrusca x Vitis vinifera]
          Length = 911

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + +   +              + + +      
Sbjct: 392 AIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALE------KEKDKASKARLVE 445

Query: 567 TEANIVDVRQGYQQALALYKR-------FRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
               + D+R   Q  +  YK+        R L +++EE+   + +   + +  + A L  
Sbjct: 446 VRRELDDLRDKLQPLMMKYKKEKERIDELRRLKQKREELLFALQEAERRYDLARAADLRY 505

Query: 619 SILHEVHIQIHQIESQ 634
             + EV   I  +E  
Sbjct: 506 GAIQEVEAAIANLEGT 521


>gi|219521893|ref|NP_001137154.1| calcium-binding and coiled-coil domain-containing protein 1 isoform
           2 [Homo sapiens]
          Length = 606

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 81/282 (28%), Gaps = 27/282 (9%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             R       E+    S    ++  +R+  +R              +    + I+    +
Sbjct: 157 TARQEHTELMEQYKGISRSHGEITEERDILSRQQGDH------VARILELEDDIQTISEK 210

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               +   DRL+   +    E        K+    ++Q       ++  L   +     S
Sbjct: 211 VLTKEVELDRLRDTVKALTREQEKLLGQLKEVQADKEQSEAELEPLKEQLRGAQELAASS 270

Query: 482 LREAALL------LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            ++A LL              I +     L      N  L +L   L  +   Q      
Sbjct: 271 QQKATLLGEELASAAAARDRTIAELHRSRLEVAE-VNGRLAELGLHLKEE-KCQWSKERA 328

Query: 536 EIHQRLCERG-----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            + Q +             + +L++ V++    +   +  +   +           +   
Sbjct: 329 GLLQSVEAEKDKILKLSAEILRLEKAVQEERTQNQVFKTELAREKDS------SLVQLSE 382

Query: 591 LSRQKEEIEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQ 630
             R+  E+   +   Q   +   E+   L+  + ++  ++ +
Sbjct: 383 SKRELTELRSALRVLQKEKEQLQEEKQELLEYMRKLEARLEK 424


>gi|260829947|ref|XP_002609923.1| hypothetical protein BRAFLDRAFT_85871 [Branchiostoma floridae]
 gi|229295285|gb|EEN65933.1| hypothetical protein BRAFLDRAFT_85871 [Branchiostoma floridae]
          Length = 1631

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 29/207 (14%)

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
           E    GR    + +                 K K +K  +LRE            +  EQ
Sbjct: 686 ESRPPGRALHMHEKLSSPSRKKPLAESWKKHKEKQAKAAALRER-----------LKTEQ 734

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +L  +     E+++    L              + ++L       LL+ L   VR A 
Sbjct: 735 QCKLQQLEERIKEVREWKEQLLDQR-------RLAMDEKLERAERKRLLQ-LQAVVRKAQ 786

Query: 562 LWSAT-TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
              A   E   ++  +   +   +  R++L+  + +E+   + Q   + +A K   +   
Sbjct: 787 EEEAKANEIAFINTLEAQNKRHDIMTRYQLVESRLQELL-DMRQKKQEEKAAKEEAVQER 845

Query: 621 LHEVHIQ--------IHQIESQEAMIE 639
              +  +        I++ E QEA IE
Sbjct: 846 RKALEAERQARVQELINKREEQEARIE 872


>gi|7243019|dbj|BAA92557.1| KIAA1319 protein [Homo sapiens]
          Length = 1208

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 75/208 (36%), Gaps = 11/208 (5%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLTL 491
           Q+ +         G    K    +D     + L +    K ++ ++  LRE  L  L   
Sbjct: 449 QVMELQNKLKHVQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALKGA 508

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           +    +     +     +    + ++L   +     +      E   ++        L +
Sbjct: 509 LKE-EVASRDQEVEHVRQQYQRDTEQLRRSMQDATQDHAVLEAE---RQKMSALVRGLQR 564

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALY----KRFRLLSRQKEEIEKQIAQVT- 606
           +L+    + G W +  + N  D+R   Q+ L L     +    L  + E +++++ Q   
Sbjct: 565 ELEETSEETGHWQSMFQKNKEDLRATKQELLQLRMEKEEMEEELGEKIEVLQRELEQARA 624

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
           + G+  +  +L   L     ++ +++++
Sbjct: 625 SAGDTRQVEVLKKELLRTQEELKELQAE 652



 Score = 38.3 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 78/225 (34%), Gaps = 22/225 (9%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + +  RLQ L Q+   +        ++     ++    +  +       +L      R 
Sbjct: 941  KELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEKVSRLETELDEEKNTVELLTDRVNRG 1000

Query: 485  A----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDFVEQKY 531
                  L   L+   +  Q+   +   +   N +L+ +L S           S    Q  
Sbjct: 1001 RDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQ 1060

Query: 532  FLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             L E +     E+       ++L+R+V++  +       ++ D +        L  R + 
Sbjct: 1061 LLQERLQAEEREKTVLQSTNRKLERKVKELSIQIEDERQHVNDQKDQ------LSLRVKA 1114

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTA-ILISILHE-VHIQIHQIES 633
            L RQ +E E++I ++    +  +        ++E +  +I  +E 
Sbjct: 1115 LKRQVDEAEEEIERLDGLRKKAQREVEEQHEVNEQLQARIKSLEK 1159


>gi|326428955|gb|EGD74525.1| hypothetical protein PTSG_05889 [Salpingoeca sp. ATCC 50818]
          Length = 1632

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 101/345 (29%), Gaps = 17/345 (4%)

Query: 312  KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371
            + S +  L  D D       ++           G R  +V        +           
Sbjct: 815  QQSYQPSLLADSDRQSQPRQHREDGEQEQMGRDGERHWYVEEMELLRKELHTLRVNNDEL 874

Query: 372  EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
             +   +    +    K E      N      EL          +K+   R   +  +  R
Sbjct: 875  REDKRQLQDKLGS-IKEELTQWENNYNQLANELHHEQGVLTERVKEHLQR---ADTMLAR 930

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
                           G    + A     K  S           +     ++R  ALL   
Sbjct: 931  NTATRDGDGEGGGDEGAATAEEAEENAGKMASMSKTAPPPGVQRQQDSCTIRMDALLSAR 990

Query: 492  INHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                  +  + Q L  +R   + +LQ L   L +    ++    E        +     +
Sbjct: 991  -RELKAVTSERQALVTLRLAMDKQLQHLQDALEATLQSEEKLHEENTALH---QQLDTRV 1046

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKG 609
            ++L R  +   +       +  + R    Q +  L+ R   L+ +K+    +  ++ AK 
Sbjct: 1047 EELAR-AKKTVVELRQERDSAAEARATLAQEVEGLHARIDRLAAEKDSAMDEKQRLEAKV 1105

Query: 610  E--AEKTAILIS----ILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            +   E+    +      L E   Q+ ++++ E  +EG  +   R+
Sbjct: 1106 KHVEEEYKAEMEDVRGELREATRQVGRMKAFELELEGAKEEKERI 1150


>gi|311259502|ref|XP_003128128.1| PREDICTED: WD repeat-containing protein 65-like [Sus scrofa]
          Length = 1250

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 32/367 (8%), Positives = 103/367 (28%), Gaps = 51/367 (13%)

Query: 306  QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
            ++  L   +   +   D +            L     +             +D    +  
Sbjct: 707  RVEELKMENEYQLRLKDMNYSEKIKELTDKFLQEMESLKTKNQVLRTEKEKQD---ILHR 763

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
                         L  ++    ++         + + + +   +     ++D        
Sbjct: 764  ERIDDLLDKQSRELQDLECCSNQKLLLEYEKYQELQLKSQRMQEEYEKQLRDN---DETK 820

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
                + L + ++  + E        +++ R + ++    +         ++    +  E 
Sbjct: 821  SQALEELTEFYEAKLQEKISLLEEAQEDVRQQLREFEETKKQIEEDEDREIQDIKTKYEK 880

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L           +++ +    ++ +   ++K +S L  +  E +    E +     +  
Sbjct: 881  KL-----------RDEKESNLRLKGETGIMRKKFSSLQKEIEE-RTNDIELLKG--EQVK 926

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQ 601
               ++K L++ +          +  I D  +         +       +L  + +E++KQ
Sbjct: 927  LQGVIKSLEKDILGLKREIQERDETIQDKEKRIYDLKKKNQELEKFKFVLDYKIKELKKQ 986

Query: 602  I--AQVTAKGEAEKTAILISIL-------------------------HEVHIQIHQIESQ 634
            I   +   K   E+   + + L                          E+  +  +    
Sbjct: 987  IEPRENEIKVMKEQIQEMEAELGRFHKQNTQLELNITELWQKLRATDQEMRRERQKERDL 1046

Query: 635  EAMIEGF 641
            EA+++ F
Sbjct: 1047 EALVKRF 1053


>gi|294615189|ref|ZP_06695070.1| von Willebrand factor type A domain protein [Enterococcus faecium
           E1636]
 gi|291591913|gb|EFF23541.1| von Willebrand factor type A domain protein [Enterococcus faecium
           E1636]
          Length = 742

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 83/265 (31%), Gaps = 20/265 (7%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           +          E+        ++     + + +     K    +      + + ++ L +
Sbjct: 224 NRNYQGNRPLNESLRDRMQHAEKMDLPALEVMSERAMAKTMIQKQELLLKMAEIIRLLDE 283

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
                        +      +     Q L+QS   K          E A+L   ++   +
Sbjct: 284 TAKANAIKGVAGMRSYFYWANTYKQGQDLLQSIYPKVLYKLSTDPDELAILEQALSDSGL 343

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           L E    L   ++ + +         S+  + +    EE ++R       E+L +LD + 
Sbjct: 344 LLELQDILRKEKWGHPQ---------SEHTKGRTISAEEANERNITENAEEIL-RLDEKK 393

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +       E    +  +  +  +    +      +  +IE +  +    G+  +    
Sbjct: 394 SLSAEEPNEGEEKQEETIE--KNEIPPQMQ----KERSSDIEGKNQKEQQTGDDSQEMSA 447

Query: 618 I---SILHEVHIQIHQIESQEAMIE 639
               +   E+  Q+++ E+++ M E
Sbjct: 448 SDMEAHDKEIKKQLNK-EARQIMKE 471


>gi|223982855|ref|ZP_03633076.1| hypothetical protein HOLDEFILI_00350 [Holdemania filiformis DSM
           12042]
 gi|223965177|gb|EEF69468.1| hypothetical protein HOLDEFILI_00350 [Holdemania filiformis DSM
           12042]
          Length = 443

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 65/178 (36%), Gaps = 27/178 (15%)

Query: 483 REAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            E +LL +L  +P  ++   +E L    +     +K+++ + +   E K      +   L
Sbjct: 10  AEQSLLGSLFIYPNSVRIASEEGLRSEEFFLEAHRKIYAAVETLNGEGKPVDAVSVASLL 69

Query: 542 CERGFGELLKQLD-------------------RQVRDAGLWSATTEANIVDVRQGYQQAL 582
            ++G    +  L+                     ++   L     E       +G Q A 
Sbjct: 70  TDQGLLASVGGLEYIMQLADSSVTSASTKYYIELIQSKALLRNLIETAQNIAEEGMQNAG 129

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +     +  +Q  ++ ++        + + +  +++ + E    IH++ +Q++ + G
Sbjct: 130 DMESMMDMAEKQILDVTRR----RKTTDFKSSNEVVNEVIE---NIHKMSAQKSGVTG 180


>gi|223462553|gb|AAI50605.1| Cingulin [Homo sapiens]
          Length = 1203

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 75/208 (36%), Gaps = 11/208 (5%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLTL 491
           Q+ +         G    K    +D     + L +    K ++ ++  LRE  L  L   
Sbjct: 444 QVMELQNKLKHVQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALKGA 503

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           +    +     +     +    + ++L   +     +      E   ++        L +
Sbjct: 504 LKE-EVASRDQEVEHVRQQYQRDTEQLRRSMQDATQDHAVLEAE---RQKMSALVRGLQR 559

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALY----KRFRLLSRQKEEIEKQIAQVT- 606
           +L+    + G W +  + N  D+R   Q+ L L     +    L  + E +++++ Q   
Sbjct: 560 ELEETSEETGHWQSMFQKNKEDLRATKQELLQLRMEKEEMEEELGEKIEVLQRELEQARA 619

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
           + G+  +  +L   L     ++ +++++
Sbjct: 620 SAGDTRQVEVLKKELLRTQEELKELQAE 647



 Score = 38.3 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 78/225 (34%), Gaps = 22/225 (9%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + +  RLQ L Q+   +        ++     ++    +  +       +L      R 
Sbjct: 936  KELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEKVSRLETELDEEKNTVELLTDRVNRG 995

Query: 485  A----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDFVEQKY 531
                  L   L+   +  Q+   +   +   N +L+ +L S           S    Q  
Sbjct: 996  RDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQ 1055

Query: 532  FLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             L E +     E+       ++L+R+V++  +       ++ D +        L  R + 
Sbjct: 1056 LLQERLQAEEREKTVLQSTNRKLERKVKELSIQIEDERQHVNDQKDQ------LSLRVKA 1109

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTA-ILISILHE-VHIQIHQIES 633
            L RQ +E E++I ++    +  +        ++E +  +I  +E 
Sbjct: 1110 LKRQVDEAEEEIERLDGLRKKAQREVEEQHEVNEQLQARIKSLEK 1154


>gi|145296029|ref|YP_001138850.1| hypothetical protein cgR_1952 [Corynebacterium glutamicum R]
 gi|140845949|dbj|BAF54948.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1155

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 54/157 (34%), Gaps = 14/157 (8%)

Query: 491 LINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           L+       ++ +EL   +      L  +         + +    E + Q        E 
Sbjct: 328 LLGRAETADKELEELEMAVEMATERLTSIQEEAEDKAAQAREAEREHLAQVRAISDRREG 387

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK---RFRLLSRQKEE--------I 598
           + +L            + E     + +  ++ +       R R L+ ++++        +
Sbjct: 388 VVRLLASEESLRTQHTSAEEEAERLSEQLEEFIGRILDVERERRLTDERKQGVDTDRAPL 447

Query: 599 EKQIAQVTAKGEAEKT--AILISILHEVHIQIHQIES 633
           E+ + Q   + EA +T    L +   ++  ++ +++S
Sbjct: 448 EEALKQAKHEAEAAETRLEELRTKRSDLEKEVSRLQS 484


>gi|119619468|gb|EAW99062.1| dystrophin (muscular dystrophy, Duchenne and Becker types), isoform
            CRA_b [Homo sapiens]
          Length = 3672

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 52/450 (11%), Positives = 127/450 (28%), Gaps = 34/450 (7%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 2529 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 2584

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 2585 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 2644

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2645 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 2703

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 2704 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 2763

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2764 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 2823

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2824 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGL- 2881

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                       L+    E    +  Q   +   L K+   ++ + E++   +     + +
Sbjct: 2882 ---------EKLYQEPRELPPEERAQNVTRL--LRKQAEEVNTEWEKLN--LHSADWQRK 2928

Query: 611  AEKTAILISILHEVHIQIHQIESQEAMIEG 640
             ++T   +  L E   ++     Q  +I+G
Sbjct: 2929 IDETLERLRELQEATDELDLKLRQAEVIKG 2958



 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L +  +K   +     +  K        K  S R   ++L+  +      L E  +   
Sbjct: 1701 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 1760

Query: 491  -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                  I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 1761 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 1820

Query: 546  ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                 ELL++ D   +         E  I                        +   Q  
Sbjct: 1821 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 1880

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1881 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 1932


>gi|119610412|gb|EAW90006.1| hCG1986604, isoform CRA_c [Homo sapiens]
          Length = 1939

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1565 IQLELNQVKSEVDRKIAEKDEEIDQMKRNHIRIVESMQSTLDAEIRSRNDAIRLKKKMEG 1624

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1625 DLNEMEIQLNHANRMAAEALRNYRNTQAILKDTQLHLDDAL-----RSQEDLKEQ--LAM 1677

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1678 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1737

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1738 ISQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1797

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1798 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1829


>gi|59805048|gb|AAX08108.1| heat shock protein 101 [Vitis vinifera]
          Length = 911

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + +   +              + + +      
Sbjct: 392 AIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALE------KEKDKASKARLVE 445

Query: 567 TEANIVDVRQGYQQALALYKR-------FRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
               + D+R   Q  +  YK+        R L +++EE+   + +   + +  + A L  
Sbjct: 446 VRRELDDLRDKLQPLMMKYKKEKERIDELRRLKQKREELLFALQEAERRYDLARAADLRY 505

Query: 619 SILHEVHIQIHQIESQ 634
             + EV   I  +E  
Sbjct: 506 GAIQEVEAAIANLEGT 521


>gi|297475038|ref|XP_002687731.1| PREDICTED: myosin, heavy chain 9, non-muscle [Bos taurus]
 gi|296487363|gb|DAA29476.1| myosin, heavy chain 9, non-muscle [Bos taurus]
          Length = 1965

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 88/265 (33%), Gaps = 28/265 (10%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EKL ++     +     E E        ++ ELE    +    +++++ R  + QA + 
Sbjct: 880  AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKK 939

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++QQ  Q+   +        +K    +       + ++   +  +       +E  LL  
Sbjct: 940  KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCKLAKEKKLLE- 998

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +                      E    +L 
Sbjct: 999  -----DRIAEFTTNLMEEEEKSKSLAKLKNK--------------------HEAMITDLE 1033

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L R+ +       T      D      Q   L  +   L  Q  + E+++    A+ E
Sbjct: 1034 ERLRREEKQRQELEKTRRKLEGDSTDLNDQIAELQAQIAELKMQLAKKEEELQAALARVE 1093

Query: 611  AEKTAILIS--ILHEVHIQIHQIES 633
             E T   ++   + E+  QI +++ 
Sbjct: 1094 EETTQKNMALKKIRELESQISELQE 1118



 Score = 37.9 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 70/228 (30%), Gaps = 15/228 (6%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            + ++ +    + +R+   +L  +            K     +D +       ++     K
Sbjct: 1579 QSEEKKKQLVKQVREMEAELEDERKQRSIAVAARKKLEMDLKDLEAHIDSANKNRDEAIK 1638

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +K   +    +  L         + + LA  + +  +L+ + + +     E       
Sbjct: 1639 QLRKVQAQMKDYMREL---DDTRASREEILAQSKENEKKLKSMEAEMIQLQEELAAAERA 1695

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +   +   EL  ++        L           + Q  ++         L++ + 
Sbjct: 1696 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELVNDRL 1752

Query: 596  EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIESQ 634
            ++   QI Q+      E++           L     E+ +++ ++E  
Sbjct: 1753 KKANLQIDQLNTDLNLERSHTQKNENARQQLERQNKELKVKLQEMEGT 1800


>gi|255714384|ref|XP_002553474.1| KLTH0D17688p [Lachancea thermotolerans]
 gi|238934854|emb|CAR23036.1| KLTH0D17688p [Lachancea thermotolerans]
          Length = 680

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 75/235 (31%), Gaps = 30/235 (12%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            +L    +  +   +   R  KK       +  S   +++   +     +P+ RE  + +
Sbjct: 41  KKLSIEERLSLAARAKSRRKGKKPDSPTPSRATSDLNIEAKGSESPDLVQPAGREEEIHV 100

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLC 542
            L         +   +    Y +   + +   L             +       + + + 
Sbjct: 101 ELAKDGPSSACELDAILPSDYRDLPAETVVDILKPYLRKHVESLAPRGQPSGSSLMKLIR 160

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA------------------L 584
           E+    ++++L  +  +         + I ++R   +                      L
Sbjct: 161 EK--DNIIEELREEGENLSKLELRNNSTIKELRDKLKATEKSLDSKKKLLDAKSAANALL 218

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISI-LHEVHIQIHQIESQEA 636
             R   +  Q++E+E+Q+   T++ +     T  L +  L ++   +   ESQ A
Sbjct: 219 ENRLEEMQSQRKELERQLDSTTSERDRATKDTEELKTEVLSKLKKSLEDAESQSA 273


>gi|229550977|ref|ZP_04439702.1| replicative DNA helicase DnaB [Lactobacillus rhamnosus LMS2-1]
 gi|258538311|ref|YP_003172810.1| replicative DNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|229315669|gb|EEN81642.1| replicative DNA helicase DnaB [Lactobacillus rhamnosus LMS2-1]
 gi|257149987|emb|CAR88959.1| Replicative DNA helicase [Lactobacillus rhamnosus Lc 705]
          Length = 461

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 54/181 (29%), Gaps = 18/181 (9%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +        E A+L  +  +   L +  + +    +     + L+  +            
Sbjct: 8   QQPPHSDEAERAVLGGIFLNADTLPDAQEYVTADDFYKKSHRLLFQAMTDLQDNGTAIDT 67

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN-------IVDVRQGYQQAL----- 582
             +   L        L  +        L ++T  A+       IV  +   ++ +     
Sbjct: 68  VTVTDYLDNH---NQLDDIGGAGYITDLVASTPIASNVVYYAKIVQQKSTLRKLISTAQS 124

Query: 583 ---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                Y     +    E+ E+QI  V+          +  +L++   QI Q+   +  I 
Sbjct: 125 IASRSYTEQDDVEGLVEDAERQIMDVSENRNQAGFKQIKDVLNQAMAQIDQLYQNDQTIT 184

Query: 640 G 640
           G
Sbjct: 185 G 185


>gi|196251066|ref|ZP_03149747.1| DnaB domain protein helicase domain protein [Geobacillus sp.
           G11MC16]
 gi|196209438|gb|EDY04216.1| DnaB domain protein helicase domain protein [Geobacillus sp.
           G11MC16]
          Length = 416

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 46/143 (32%), Gaps = 5/143 (3%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E A+L T +  P +L+E    L +  + + + +KL++ +     +        +     
Sbjct: 5   AEKAVLGTFLECPYLLKETV--LTETHFSDPKHRKLFAAMKRIAQQGDEPDIVTLSTTED 62

Query: 543 ERGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
              FG L  L ++     +                +  ++ L +  +      +      
Sbjct: 63  VANFGGLSYLNEISAFANETKFDQYEVLVLDEWKEREKRRILVVAAQENWDVDKITTALT 122

Query: 601 QIAQVTAKGEAEKTAILISILHE 623
           ++ +       +    L+  + E
Sbjct: 123 RLNEGRITDHHD-INDLLQEVAE 144


>gi|148669497|gb|EDL01444.1| mCG116950 [Mus musculus]
          Length = 1801

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 31/331 (9%), Positives = 89/331 (26%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +        +     
Sbjct: 193 YDTAMDKLEVVKKDYDALRKRYSEKVAMHNSDLSRLEQLGEENQRLQKQTEMLTQQRDTA 252

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E           +          
Sbjct: 253 IQLQHQCALSLRRFETIH--HELSKATAQNKDLQWEMELLQSELTELRSKQVKTAKESEK 310

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
               +D      Y   + +R Q + +    +        K  +   ++K  S+ +     
Sbjct: 311 YKEERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAASEEMEALRQ 369

Query: 472 VK--GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +K    +    + +E  +L                         + + L   L     E 
Sbjct: 370 IKDTVTMDAGRANKEVEILR-----------------------KQCKALCQELKEALQEA 406

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 407 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 463

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+       +  +   L++ 
Sbjct: 464 DVSRELKELKEQME--CQLEKEARFRQLMAH 492


>gi|146322005|ref|YP_001201716.1| replicative DNA helicase [Streptococcus suis 98HAH33]
 gi|253752791|ref|YP_003025932.1| replicative DNA helicase [Streptococcus suis SC84]
 gi|253754616|ref|YP_003027757.1| replicative DNA helicase [Streptococcus suis P1/7]
 gi|253756549|ref|YP_003029689.1| replicative DNA helicase [Streptococcus suis BM407]
 gi|145692811|gb|ABP93316.1| Replicative DNA helicase [Streptococcus suis 98HAH33]
 gi|251817080|emb|CAZ52732.1| replicative DNA helicase [Streptococcus suis SC84]
 gi|251819013|emb|CAZ56860.1| replicative DNA helicase [Streptococcus suis BM407]
 gi|251820862|emb|CAR47628.1| replicative DNA helicase [Streptococcus suis P1/7]
 gi|292559411|gb|ADE32412.1| Replicative DNA helicase [Streptococcus suis GZ1]
          Length = 451

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 7/155 (4%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            L + ++  +  L E ++L  +      L    + +    +  +  + ++  + +     
Sbjct: 3   ELDELRVQPQDILAEQSVLGAIFLDEGKLVFVREYIEAEDFFKHAHKLIFKAMIALSDRN 62

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +      +   L   G       L+     A L    +        + Y + +A     R
Sbjct: 63  EAIDATTMRNYLVNHG------DLENIGGLAYLAEIISSVPTAANAEFYAKIVAEKSNLR 116

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            L  +  +   Q  + T  G  +  A     L +V
Sbjct: 117 KLIARLTDAVNQAYEGTD-GSDDIIANAEKALIDV 150


>gi|28704045|gb|AAH47450.1| KIAA0562 protein [Homo sapiens]
          Length = 554

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 35/132 (26%), Gaps = 5/132 (3%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
               + +         L   ++      P        +  +   L  L   +      + 
Sbjct: 153 DPADFSDESNTASREKLIDHYLGHNSEDPALEGTYARKSDYISPLDDLAFDMYQDPEVAQ 212

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILISILH 622
                    R+  Q+    Y +   L +   +++K   ++ +   +           +  
Sbjct: 213 IIRKLDERKREAVQKERYDYAKK--LKQAIADLQKVGERLGRYEVEKRCAVEKEDFDLAK 270

Query: 623 EVHIQIHQIESQ 634
           E   Q+ Q  ++
Sbjct: 271 EKKQQMEQYRAE 282


>gi|47222635|emb|CAG03000.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1357

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 100/287 (34%), Gaps = 20/287 (6%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     A  K   E L       +   + +     +   + + H K   +  KD+++   
Sbjct: 471 QLRDLEAKVKDQEEELDEQAGSIQMLEQAKLRLEMEMERQRQAHSKEIES--KDEEV-DE 527

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR-DQKGPSQRLMQSSLVKGKLSKKPSL 482
             ++   +L+Q+  +   E+    +  ++             ++ Q  +   K  KK   
Sbjct: 528 IRRSCSKKLKQMEVQLEEEYEDKQKVLRERRELECKLLNIQDKVSQRDVESEKRLKKDLK 587

Query: 483 REAALLL---TLINHPAI-------LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           R   LL     +++H          + +   +L +  + +    K    +  +  +    
Sbjct: 588 RTKVLLADAQIMLDHLKTNAPSKREIAQLKNQLEESEFTHAAAVKARKSMEIEIEDLHIQ 647

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
           + + +  +L       L +Q+ R  R+     +  E +  D+ +  ++  A   +     
Sbjct: 648 MEDVVKSKLS------LEEQVSRLQREKNDLQSRMEEDQEDMNELMKKHKAAVAQSTRDL 701

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            Q  +++ Q+ +V  + +  +   L+  L E   ++ +  ++    E
Sbjct: 702 SQISDLQAQLEEVAKEKQETQEKGLVGRLKENLEKMTEERNEHIAAE 748


>gi|66819079|ref|XP_643199.1| hypothetical protein DDB_G0276361 [Dictyostelium discoideum AX4]
 gi|60471299|gb|EAL69261.1| hypothetical protein DDB_G0276361 [Dictyostelium discoideum AX4]
          Length = 789

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 96/291 (32%), Gaps = 18/291 (6%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DP+  ++        +   E   L     K + E             +          + 
Sbjct: 177 DPNEELKKIEAEIEMRKKEEEAMLEAKKQKEKQEQLKLTEQQRIEREQKQRMERAEREQQ 236

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           Q+LR  Y + +   LQ+  +    E     R   +  +    K   +  ++    + +  
Sbjct: 237 QRLREEYERRLNMELQKKLEIERQEQELTRRKQLELEQIMILKKQEEAGLRILQEQREHQ 296

Query: 478 KKPSLR------------EAALLLTLINHPAILQ--EQYQELADIRYDNNELQKLWSFLF 523
           +K  L             E     + I    I +  +Q Q   + +    + ++   F+ 
Sbjct: 297 EKVRLAKEKEEELKKRTMEEEARRSAIRAQEIARMSKQQQLEEEAKRLEQQKRQEAEFIL 356

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           +   + K     +      ++   E L+ +++Q ++        +   +   +   Q+ +
Sbjct: 357 ALETKSKEANLMQQQAFFLKQKEQENLQLIEKQKKEIYENQIQIDILKLKEMESQNQSKS 416

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           + ++     ++ ++++K++A    K   E          E+  QI ++E Q
Sbjct: 417 MLEKA---QQEIQDLKKRLADGETKFNQETVKKTSDE-EELKKQIQELEQQ 463



 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 75/214 (35%), Gaps = 19/214 (8%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           +  +++++   +K             + +  R Q+       Q    + K  ++   +EA
Sbjct: 293 REHQEKVRLAKEKEEELKKRTMEEEARRSAIRAQEIARMSKQQQLEEEAKRLEQQKRQEA 352

Query: 486 ALLLTL---------INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +L L         +   A   +Q ++          LQ +       +  Q      +
Sbjct: 353 EFILALETKSKEANLMQQQAFFLKQKEQ--------ENLQLIEKQKKEIYENQIQIDILK 404

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-VDVRQGYQQALALYKRFRLLSRQK 595
           + +   +     +L++  ++++D     A  E     +  +       L K+ + L +QK
Sbjct: 405 LKEMESQNQSKSMLEKAQQEIQDLKKRLADGETKFNQETVKKTSDEEELKKQIQELEQQK 464

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           + + KQI ++    +  +   L   L    +++H
Sbjct: 465 DVLRKQIQELEVVQKP-RLEQLEQELKNKELELH 497


>gi|326920286|ref|XP_003206405.1| PREDICTED: inner centromere protein-like [Meleagris gallopavo]
          Length = 828

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 66/210 (31%), Gaps = 11/210 (5%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           +     Q    E         +     +Q    +   +      +   +   R   +L  
Sbjct: 450 KYNTPLQHDPKEKERQKLQALRKKEEAEQLRKQKVEEEKKRRLEEAKLRREERLRKVLQA 509

Query: 491 LINHPAILQEQYQELAD-IRYDNNELQKLWSFLFSDFVEQKYF------LPEEIHQRLCE 543
                 + +E+ + +   +   + + +K+     ++   +K          E   ++  E
Sbjct: 510 RERAEQLEEERKRRIEQKLALFDEKTEKVREERLAEEKIKKRAAAKKMEEAEARRRQDEE 569

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL--SRQKEEIEKQ 601
               + L+Q + + R   L     E      R+  +Q  A  +R + L   R+ E  ++Q
Sbjct: 570 ARKQKALQQEEEERRHKELMQKKKEEEQERARKIAEQRQAEQEREKQLAAERELERKKEQ 629

Query: 602 --IAQVTAKGEAEKTAILISILHEVHIQIH 629
             I     + + EK A L         Q+ 
Sbjct: 630 ERIQAEKQREQQEKAARLQKEALAAKEQLQ 659


>gi|281210584|gb|EFA84750.1| myosin II heavy chain [Polysphondylium pallidum PN500]
          Length = 2115

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 74/240 (30%), Gaps = 17/240 (7%)

Query: 403  ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
            E+E + K     ++         + + + L  + +    E        +   R   +   
Sbjct: 1734 EVEEYKKKYETELETATQAEESRKKLAEELDAIKKTLDEEKKARNEAERAKKRLESENED 1793

Query: 463  SQRLMQSSLVKGKLSKKPSLREAALL---LTLINHPAI--------LQEQYQELADIRYD 511
                + + +     ++K   +    L      +N  A           +  + + D +  
Sbjct: 1794 YLARLDAEVKNRSRAEKDKKKYEKDLRETKGKLNDEAATKTQTEIGAAKLEEVIEDFKSK 1853

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
             +        L     +      +++  ++ + G  ++  +L+++ R            +
Sbjct: 1854 LDAADAARQQL-EKSKKALEGQIDDLRAQIDDEGKVKM--RLEKEKRALEGELEDLREQV 1910

Query: 572  VDVRQGYQQALAL-YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             D  +   +A      +   L   +  ++K+I    +  +A     L   L EV  ++ +
Sbjct: 1911 DDAEESRSEAENAKRLQDLDLEEARRNLQKEIDAKESAEDA--KNNLQRELIEVKGRLEE 1968


>gi|119963675|ref|YP_947629.1| ATP-dependent chaperone protein ClpB [Arthrobacter aurescens TC1]
 gi|119950534|gb|ABM09445.1| ATP-dependent chaperone protein ClpB [Arthrobacter aurescens TC1]
          Length = 878

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 71/204 (34%), Gaps = 36/204 (17%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++K+I   +   R ++           +  +++    + ++     ++++AL+    ++H
Sbjct: 324 YRKHIESDAALERRFQPVTVEEPDVEDAISILRGLRERLEVFHGVRIQDSALVAAATLSH 383

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +    +L + + S   E                     L +L 
Sbjct: 384 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAE---------------------LDELT 421

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           R+V    +  A          +          R   L R+  ++  +     A+ EAE+ 
Sbjct: 422 RKVTRLEIEDAALAKETDPASKT---------RLTELRRELADLRAEADAKRAQWEAER- 471

Query: 615 AILISILHEVHIQIHQ--IESQEA 636
              I  L E+  ++ +  +E++EA
Sbjct: 472 -QAIHKLQEIRTELERARLEAEEA 494


>gi|94265992|ref|ZP_01289715.1| hypothetical protein MldDRAFT_4680 [delta proteobacterium MLMS-1]
 gi|93453458|gb|EAT03874.1| hypothetical protein MldDRAFT_4680 [delta proteobacterium MLMS-1]
          Length = 697

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 72/197 (36%), Gaps = 28/197 (14%)

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYF 532
           L       E  L   L +   +++++  E   +   N E ++L +++     +       
Sbjct: 439 LDPVMLPMEGLLDNLLAHQLWLVEKRADE--AMEQANQEYERLSAWIDSEEDEEFSHNLE 496

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-------- 584
             E++ Q+L +R + +L   +  + R   L     +   +D        +AL        
Sbjct: 497 SLEKLRQQLEKRSYFDLFD-VAEKARALRLAGPRLQETKLDSLNEEIDQVALGWEKIHDF 555

Query: 585 -------------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                         +R R   R   +  ++ A+   +G  +K     + L  V+ ++ ++
Sbjct: 556 WQDYPYKGFWPQMEERLRGTRRLLVDARREAAKSLRQG-RQKLNTARARLKAVNARVARM 614

Query: 632 ESQEAMIEGFGKMSGRL 648
           +  + +++G     GRL
Sbjct: 615 QRLQLVMDGLRIFVGRL 631


>gi|27923755|sp|Q9P2M7|CING_HUMAN RecName: Full=Cingulin
          Length = 1197

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 75/208 (36%), Gaps = 11/208 (5%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLTL 491
           Q+ +         G    K    +D     + L +    K ++ ++  LRE  L  L   
Sbjct: 438 QVMELQNKLKHVQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALKGA 497

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           +    +     +     +    + ++L   +     +      E   ++        L +
Sbjct: 498 LKE-EVASRDQEVEHVRQQYQRDTEQLRRSMQDATQDHAVLEAE---RQKMSALVRGLQR 553

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALY----KRFRLLSRQKEEIEKQIAQVT- 606
           +L+    + G W +  + N  D+R   Q+ L L     +    L  + E +++++ Q   
Sbjct: 554 ELEETSEETGHWQSMFQKNKEDLRATKQELLQLRMEKEEMEEELGEKIEVLQRELEQARA 613

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
           + G+  +  +L   L     ++ +++++
Sbjct: 614 SAGDTRQVEVLKKELLRTQEELKELQAE 641



 Score = 38.3 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 83/226 (36%), Gaps = 23/226 (10%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + +  RLQ L Q+   +        ++     ++    +  +       +L      R 
Sbjct: 930  KELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEKVSRLETELDEEKNTVELLTDRVNRG 989

Query: 485  A----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDFVEQKY 531
                  L   L+   +  Q+   +   +   N +L+ +L S           S    Q  
Sbjct: 990  RDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQ 1049

Query: 532  FLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             L E +     E+       ++L+R+V++  +       ++ D +        L  R + 
Sbjct: 1050 LLQERLQAEEREKTVLQSTNRKLERKVKELSIQIEDERQHVNDQKDQ------LSLRVKA 1103

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
            L RQ +E E++I ++   G  +K    +   HEV+ Q+  +I+S E
Sbjct: 1104 LKRQVDEAEEEIERLD--GLRKKAQREVEEQHEVNEQLQARIKSLE 1147


>gi|313233988|emb|CBY10156.1| unnamed protein product [Oikopleura dioica]
          Length = 1713

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 83/249 (33%), Gaps = 29/249 (11%)

Query: 413  NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
                 + LR  Y + +  +     Q+ +++ +     W+        +   +       +
Sbjct: 1319 AKHDHELLREAYDEEVEAK--NELQRQLSKSNSESSQWRTKYETDAVQRTEELEDAKKKL 1376

Query: 473  KGKLSKKPSLREAALLLT--LINHPAILQEQYQELA-DIRYDNNELQKL--WSFLFSDFV 527
             G+LS+     EAAL     L      LQ + ++L  ++   N     L      F   +
Sbjct: 1377 SGRLSEAEESVEAALAKCSSLEKSKGRLQSEIEDLTVELERANAAAGALEKKQRSFDKIL 1436

Query: 528  EQKYFLPEEIHQRLCER----------------GFGELLKQLDRQVRDAGLWSATTEANI 571
            E+     EEI+  L +                  + E +  L+   R+            
Sbjct: 1437 EENKIKQEEINAELEKAQKDSREASNEVFKMRNAYEEAVDCLESAKRENKQVQEEIADLT 1496

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHEVH---- 625
              V +G +    L K  R +  ++ E+   + +  A  + E  KT  +   L ++     
Sbjct: 1497 DQVAEGAKSISELEKAKRNIEVERNELAASLEETEAAVESEEAKTLRITVELQQIKSESD 1556

Query: 626  IQIHQIESQ 634
             ++ + + +
Sbjct: 1557 RRLQEKDEE 1565



 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 85/270 (31%), Gaps = 15/270 (5%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +     +   E    + L      + +           E   L+       + +K +  
Sbjct: 838  EYEEMKKELEIESKRRKQLEQEYSKFIQLKNRLISEFAGETDALQDAEDRYESLMKSKID 897

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                 + + +RL +  ++   + S   R  +   +   +         S + K K + + 
Sbjct: 898  LDGKIKELHERL-EDEEEINVDLSNKRRKLETECKELRKDIDDLEGTLSKVEKEKSTVEA 956

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS--DFVEQKYFLPEEIH 538
             +R              L      +A ++ +   LQ+            E K     +  
Sbjct: 957  DVRTKT---------DELSALEDTIAKLQKEKKALQEAHQQALDDLQAEEDKVNSLSKAK 1007

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             +L ++   +L + ++ + R              D+R   +  + L    + L  + ++ 
Sbjct: 1008 NKLEQQ-VDDLEQSVETEKRSRLDLERLKRKLEGDLRLAQETIMDLENDKQRLEEKLKKA 1066

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            E +  Q++ + E E    L++ L +   ++
Sbjct: 1067 EFEYNQLSTRFEDE--QALVAQLQKKIKEL 1094



 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/269 (9%), Positives = 88/269 (32%), Gaps = 29/269 (10%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
             ++        +      L   I  + +   +      +    +++ ++   E     + 
Sbjct: 797  IQSNWRAYTTLKDWEWQKLLFKIRPLLNTAEKKAEFDELLKEYEEMKKELEIESKRRKQL 856

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
             ++ ++    K    RL+     +    +    R  +L+ + I+    ++E ++ L D  
Sbjct: 857  EQEYSKFIQLKN---RLISEFAGETDALQDAEDRYESLMKSKIDLDGKIKELHERLEDEE 913

Query: 510  YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE----------------RGFGELLKQL 553
              N +L      L ++  E +    +++   L +                     L   +
Sbjct: 914  EINVDLSNKRRKLETECKELRK-DIDDLEGTLSKVEKEKSTVEADVRTKTDELSALEDTI 972

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEAE 612
             +  ++        +  + D++    +  +L K    L +Q +++E+ +  +  ++ + E
Sbjct: 973  AKLQKEKKALQEAHQQALDDLQAEEDKVNSLSKAKNKLEQQVDDLEQSVETEKRSRLDLE 1032

Query: 613  KTAI--------LISILHEVHIQIHQIES 633
            +               + ++     ++E 
Sbjct: 1033 RLKRKLEGDLRLAQETIMDLENDKQRLEE 1061


>gi|297477378|ref|XP_002689327.1| PREDICTED: transcription elongation regulator 1 isoform 2 [Bos
           taurus]
 gi|296485179|gb|DAA27294.1| transcription elongation regulator 1 isoform 2 [Bos taurus]
          Length = 1041

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 31/348 (8%), Positives = 105/348 (30%), Gaps = 42/348 (12%)

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
             +++ L   +P ++              +   +   +     +         +D DS  
Sbjct: 524 MEEVKKLRHPTPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPVKAKKRKRDDNKDIDSEK 583

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
               +   +     ++  ++   K+  +          +  E  L   +   +       
Sbjct: 584 EAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPR------- 636

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y       L    +K + +     R  ++    +++   ++   +  + + K + + +  
Sbjct: 637 YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRVTFS 691

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A              +++ +  +     + + L++   +   +++    +   +++  
Sbjct: 692 EFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKEDSKTRGEKIKS 740

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQALALYK---RFR 589
             F  L                  E++             D+ + Y + +A      + +
Sbjct: 741 DFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEK 800

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 801 ELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 843


>gi|194669005|ref|XP_874188.3| PREDICTED: transcription elongation regulator 1 isoform 2 [Bos
           taurus]
          Length = 1039

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 31/348 (8%), Positives = 105/348 (30%), Gaps = 42/348 (12%)

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
             +++ L   +P ++              +   +   +     +         +D DS  
Sbjct: 522 MEEVKKLRHPTPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPVKAKKRKRDDNKDIDSEK 581

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
               +   +     ++  ++   K+  +          +  E  L   +   +       
Sbjct: 582 EAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPR------- 634

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y       L    +K + +     R  ++    +++   ++   +  + + K + + +  
Sbjct: 635 YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRVTFS 689

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A              +++ +  +     + + L++   +   +++    +   +++  
Sbjct: 690 EFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKEDSKTRGEKIKS 738

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQALALYK---RFR 589
             F  L                  E++             D+ + Y + +A      + +
Sbjct: 739 DFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEK 798

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 799 ELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 841


>gi|154148009|ref|YP_001406137.1| ATP-dependent protease La [Campylobacter hominis ATCC BAA-381]
 gi|153804018|gb|ABS51025.1| ATP-dependent protease La [Campylobacter hominis ATCC BAA-381]
          Length = 792

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 67/216 (31%), Gaps = 21/216 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              I  ++     K      G  +         +       + +  +   K  +  S   
Sbjct: 71  IGNIMRKVSMPDGKIKILFQGLAKARITKRISNEPLLADIEIFEEEIPAPKRIEALSSVL 130

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              +  L N   I       L  I  +N++L ++  F+ S    +K    +   ++  E+
Sbjct: 131 KEKIKILANSSNIFSS--DALKAIE-ENDDLSRVSDFILSTIKIKKELAFKFFTEKNLEK 187

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-A 603
               L+  ++ ++    L          D++      +    +   L  Q +EI++++  
Sbjct: 188 KVLNLIDLINGEIEINRLEK--------DIKSKVHSKIDKNNKEYFLKEQLKEIQRELGN 239

Query: 604 QVTAKGEAEKTAILISILH---------EVHIQIHQ 630
           +   + E ++                  E+  QI +
Sbjct: 240 ENDRENEIKEYREKFEKKKQFLSEDGKKEIKKQIDK 275


>gi|114602562|ref|XP_001157912.1| PREDICTED: transcription elongation regulator 1 isoform 2 [Pan
           troglodytes]
          Length = 957

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 490 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 549

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 550 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 597

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 598 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 646

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 647 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 706

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 707 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 759


>gi|116008528|ref|NP_732109.2| myosin heavy chain-like, isoform B [Drosophila melanogaster]
 gi|113194787|gb|AAN13695.2| myosin heavy chain-like, isoform B [Drosophila melanogaster]
          Length = 2194

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 35/226 (15%)

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            L+ L ++    ++   +  +K          + R  + +  +    K     E   L   
Sbjct: 1577 LRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQT 1636

Query: 492  INHPAILQEQYQE--------LADIRY---DNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            +    +  E  +E        L ++ +      E  +L           +     E   +
Sbjct: 1637 LADTRLDLEFKEEKLASLQRELEEMTFGGGTEEEFAQLR----------RSKNETERRAK 1686

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LLSRQKEEIE 599
              E    E+  Q+    +       T E    + R+  QQ     +  R    ++ + +E
Sbjct: 1687 EQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALE 1746

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE--------SQEAM 637
             Q+     + E E+  +L+   HE+  ++  +E        ++EA+
Sbjct: 1747 CQL-----ETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEAL 1787



 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/284 (8%), Positives = 76/284 (26%), Gaps = 21/284 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE--IHLKNCINHIKDQ 418
              +R   +   ++   E   +    +K+          +                 +   
Sbjct: 1714 ETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSM 1773

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            + R    +   + L Q  ++ + ++    +  +          P + L++   ++ +L  
Sbjct: 1774 EDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIR--QLRNQLED 1831

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              S R        +      +   +        +   +        +     +    E+ 
Sbjct: 1832 AESAR-----SLAMKARQTAE--AELTEVQAMFDESHRARNDA--EERANAAHRDRAELQ 1882

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             ++ E             ++             ++V +   +   +      L  Q  E+
Sbjct: 1883 AQIEENEEEL-----GELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAEL 1937

Query: 599  EKQIAQVTAKGEAEKTA---ILISILHEVHIQIHQIESQEAMIE 639
            + ++  V   G+         L     E+  ++   ++  A +E
Sbjct: 1938 QHRLDNVENLGDPSMAMMSKRLELRTKELESRLELEQATRARLE 1981


>gi|31652238|ref|NP_852477.1| protein CASP isoform c [Homo sapiens]
          Length = 676

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 98/282 (34%), Gaps = 16/282 (5%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 101 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 161 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 220

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 221 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 280

Query: 554 DRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQI 602
            ++               +  A  E  I  + +  Q+  A   + R  S  Q  ++E+Q+
Sbjct: 281 IQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQL 340

Query: 603 AQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           +   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 341 SAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 382


>gi|94986136|ref|YP_605500.1| DnaB-like protein helicase [Deinococcus geothermalis DSM 11300]
 gi|94556417|gb|ABF46331.1| DnaB-like protein helicase [Deinococcus geothermalis DSM 11300]
          Length = 849

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 53/160 (33%), Gaps = 4/160 (2%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            ++    +  E ++L +++     L      L    +     +K+++ + +     +   
Sbjct: 5   PRVPPHSNEAEISVLGSILLDNDTLIGLGDTLTPEMFYREGHRKIFAAMRALQERGEPVD 64

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L  +G    L ++       GL      A   +      Q     ++    S 
Sbjct: 65  LVTLSEHLRVQG---QLDEVGGLTYLIGLSEQVPTAAYAEHYARIVQEKHTLRQLISASG 121

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +  ++  +  Q+  +   ++   +I  + E   +    ++
Sbjct: 122 KAMQLAYE-GQLPLEDLLDRAEKMIFEVAEQKKKSEAFQA 160


>gi|332821802|ref|XP_003310841.1| PREDICTED: centrosomal protein of 120 kDa [Pan troglodytes]
          Length = 896

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 73/210 (34%), Gaps = 7/210 (3%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL-REA 485
            ++  L  L ++     S      ++    + ++  + + +Q S+ + K      +  E 
Sbjct: 621 KLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDCIHQVELER 680

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             +  L           Q+L D       L+K +         +     +     L    
Sbjct: 681 LKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSEINLLTLEK 737

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE+E+   + 
Sbjct: 738 V-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEELEQMRLRY 794

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQE 635
            A  E +        L ++  +++++  QE
Sbjct: 795 LAAEEKDTVKTERQELLDIRNELNRLRQQE 824


>gi|313679327|ref|YP_004057066.1| ATP-dependent chaperone clpb [Oceanithermus profundus DSM 14977]
 gi|313152042|gb|ADR35893.1| ATP-dependent chaperone ClpB [Oceanithermus profundus DSM 14977]
          Length = 855

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 75/194 (38%), Gaps = 17/194 (8%)

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI---------LQEQYQEL 505
           +    +G  + +  ++L + +  +K +  E      L++ P++         ++E+Y+  
Sbjct: 293 KPALARGELRLIGATTLDEYREIEKDAALERRFQPVLVDEPSVEDTISILRGIKEKYEVH 352

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
             +R  +  +    +       +++          L +     L  QL+ Q  +      
Sbjct: 353 HGVRISDPAIVAAATLSHRYISDRRLPDKA---IDLIDEAAARLRMQLESQPEEID-QLE 408

Query: 566 TTEANIVDVRQGYQQALA--LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
             +  +   R+  ++        R   + ++  E+ ++I  + A+ +AE    +++ L E
Sbjct: 409 RKKLQLEIEREALKKETDPDSKARLEEIEKEIAELTEKIEAMKAEWQAEV--EILNELRE 466

Query: 624 VHIQIHQIESQEAM 637
              ++ ++ +Q  +
Sbjct: 467 KQKELDELRTQIEL 480


>gi|311253123|ref|XP_003125434.1| PREDICTED: rho-associated protein kinase 2 [Sus scrofa]
          Length = 1407

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 99/286 (34%), Gaps = 35/286 (12%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 841  MSEKQLKQENNHLMEMKMSLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 900

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 901  ELKEECEEKTKLCKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 960

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 961  EKIMKELEIKEMMARHKQELTEKDTTIASLE---ETNRTLTSDVANLANE-----KEELN 1012

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 1013 NKLKDA--QEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1070

Query: 594  ---QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                    EK+  ++  + ++E+   L   + +   +++++++Q A
Sbjct: 1071 NDTDMRRKEKENRKLHMELKSER-EKLTQQMIKYQKELNEMQAQIA 1115


>gi|307706496|ref|ZP_07643303.1| ABC transporter family protein [Streptococcus mitis SK321]
 gi|307617951|gb|EFN97111.1| ABC transporter family protein [Streptococcus mitis SK321]
          Length = 633

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 59/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+L+  +    +    S+    +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KAEVEMLQAEEASTSNQAKESSPVN-DYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +A+K   L   L ++  +      +EAM+E
Sbjct: 591 VISEQMLETNDADKLMELQVELDKISHR-----QEEAMLE 625


>gi|307596110|ref|YP_003902427.1| chromosome segregation ATPase-like protein [Vulcanisaeta distributa
           DSM 14429]
 gi|307551311|gb|ADN51376.1| chromosome segregation ATPase-like protein [Vulcanisaeta distributa
           DSM 14429]
          Length = 485

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 76/188 (40%), Gaps = 9/188 (4%)

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT---LINHPAILQEQYQELADIR 509
           N  + +     + L    L   +     S+RE +L      L +    L+E+  +LA++ 
Sbjct: 166 NKVYNEVLNREKDLENKLLDISRRESDVSIREKSLEELRQRLESDRKALEEEKAKLAEMS 225

Query: 510 YDNNELQKLWSFLFSDFVE--QKYFLPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSA 565
                L  L + L +   +   +     E  + L E+     +   +L  + +   + + 
Sbjct: 226 SVMASLIALSNQLTARLSDLDNREKDLAEREKALNEKEAKLRDWEVELKSREQRLEMEAV 285

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
             +A    +R+  ++   + +R   L+R++ E+++   ++  +   E    L + L +  
Sbjct: 286 RIDAENARLRELEKREQEIKERLEQLARREAELKELERKLNER--QEMLNKLEAELKDKE 343

Query: 626 IQIHQIES 633
            +++ +E+
Sbjct: 344 GRLNSLEN 351



 Score = 37.9 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 79/264 (29%), Gaps = 15/264 (5%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
           E  +   +      +L   L +  N  KD   R         +L+    +  +       
Sbjct: 223 EMSSVMASLIALSNQLTARLSDLDNREKDLAEREKALNEKEAKLRDWEVELKSREQRLEM 282

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
              +      +    ++  Q    + +   +       L   L     +L +   EL D 
Sbjct: 283 EAVRIDAENARLRELEKREQEIKERLEQLARREAELKELERKLNERQEMLNKLEAELKDK 342

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS---- 564
               N L+ L         +    + +   + L +     L+ +L  + +    W     
Sbjct: 343 EGRLNSLENLLKEREDTLKKLDEEINKRRRELLDK--LEPLITKLVEEEKRLTDWEKRLL 400

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA-----EKTAILIS 619
                 +   R    +   L +    L R++EE+E ++ ++           +K   L+ 
Sbjct: 401 DKERELMNYQRALIIRENTLVELREKLDREREELESKMREINKIESECQDVRKKYEQLLK 460

Query: 620 ILHEVHIQIH----QIESQEAMIE 639
              E+   I     ++    A+I+
Sbjct: 461 EREELMKIIESKDKELNQLRALIK 484


>gi|301778639|ref|XP_002924735.1| PREDICTED: transcription elongation regulator 1-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 1084

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 617 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 676

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 677 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 724

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 725 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 773

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 774 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 833

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 834 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 886


>gi|297700058|ref|XP_002827078.1| PREDICTED: myosin-1-like isoform 2 [Pongo abelii]
          Length = 1939

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1565 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHIRIVESMQSTLDAEIRSRNDAIRLKKKMEG 1624

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1625 DLNEMEIQLNHANRMAAEALRNYRNTQAILKDTQLHLDDAL-----RSQEDLKEQ--LAM 1677

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1678 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1737

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1738 ISQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1797

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1798 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1829


>gi|194384754|dbj|BAG59537.1| unnamed protein product [Homo sapiens]
          Length = 896

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 73/210 (34%), Gaps = 7/210 (3%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL-REA 485
            ++  L  L ++     S      ++    + ++  + + +Q S+ + K      +  E 
Sbjct: 621 KLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDCIHQVELER 680

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             +  L           Q+L D       L+K +         +     +     L    
Sbjct: 681 LKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSEINLLTLEK 737

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE+E+   + 
Sbjct: 738 V-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEELEQMRLRY 794

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQE 635
            A  E +        L ++  +++++  QE
Sbjct: 795 LAAEEKDTVKTERQELLDIRNELNRLRQQE 824


>gi|62089406|dbj|BAD93147.1| transcription elongation regulator 1 variant [Homo sapiens]
          Length = 1081

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 614 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 673

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 674 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 721

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 722 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 770

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 771 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 830

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 831 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 883


>gi|73949498|ref|XP_535230.2| PREDICTED: similar to transcription elongation regulator 1 isoform
           1 [Canis familiaris]
          Length = 1080

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 613 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 672

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 673 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 720

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 721 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 769

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 770 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 829

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 830 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 882


>gi|87196334|ref|NP_001034563.1| transcription elongation regulator 1 [Mus musculus]
 gi|52783458|sp|Q8CGF7|TCRG1_MOUSE RecName: Full=Transcription elongation regulator 1; AltName:
           Full=Formin-binding protein 28; Short=FBP 28; AltName:
           Full=TATA box-binding protein-associated factor 2S;
           AltName: Full=Transcription factor CA150; AltName:
           Full=p144
 gi|74214174|dbj|BAE40341.1| unnamed protein product [Mus musculus]
 gi|148678082|gb|EDL10029.1| mCG127945, isoform CRA_a [Mus musculus]
          Length = 1100

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 31/347 (8%), Positives = 104/347 (29%), Gaps = 42/347 (12%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++ L   +P ++              +   +   +     +         +D DS   
Sbjct: 584 EDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPIKAKKRKRDDNKDIDSEKE 643

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              +   +     ++  ++   K+  +          +  E  L   +   +       Y
Sbjct: 644 AAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPR-------Y 696

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                  L    +K + +     R  ++    +++   ++   +  + + K + + +  E
Sbjct: 697 L-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSE 751

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            A              +++ +  +     + + L++   +   +++    +   +++   
Sbjct: 752 FAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKEDSKTRGEKIKSD 800

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQALALYK---RFRL 590
            F  L                  E++             D+ + Y + +A      + + 
Sbjct: 801 FFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKE 860

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 861 LERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 902


>gi|47213344|emb|CAF92967.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1881

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 74/235 (31%), Gaps = 21/235 (8%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            +L+  +++ +       R  K       +          S  + + ++K   +E A L  
Sbjct: 1438 KLKNAYEECLEHLETMKRENKNLQEEISELSEQLGEGGRSAHELEKARKQLEQERAELQA 1497

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
             +       E  +  + I     EL ++ + +     E+   + +       +R    L 
Sbjct: 1498 ALEEAEGSLEHEE--SKILQSQLELNQVKADVERKLSEKDEEMEQAKRNY--QRVLDSLQ 1553

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
              L+ + R         +    D+ +   Q     ++     +Q   ++  +  +  + +
Sbjct: 1554 ASLESETRSRNEALRVKKKMESDLNEMEIQLSQANRQAAEGQKQVRSLQASLKDLQTQLD 1613

Query: 611  AE----------------KTAILISILHEVHIQIHQIESQEAMIEG-FGKMSGRL 648
                              +  +L + L EV   + Q++    + E    + S R+
Sbjct: 1614 EAHHANQDSRENAALLERRHNLLQAELEEVRAALEQMDRSRKLAEQELSEASERV 1668



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 73/226 (32%), Gaps = 27/226 (11%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKG 474
             D   R    +  + +L Q  Q+                + + + +   + LM       
Sbjct: 1332 SDGIQRAEELEEAKKKLVQRLQEAEEAVEAANAKSSSLEKTKQRLQAEMEDLMVDLERSN 1391

Query: 475  KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
              S     ++     TL       Q+  +   ++     E + L + LF           
Sbjct: 1392 AASAALDKKQRLFDKTLA---EWKQKFEESQCELEASQKEARSLSTELFKL--------- 1439

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                    +  + E L+ L+   R+              + +G + A  L K  + L ++
Sbjct: 1440 --------KNAYEECLEHLETMKRENKNLQEEISELSEQLGEGGRSAHELEKARKQLEQE 1491

Query: 595  KEEIEKQIAQVTAKGEAEKTAILISILH------EVHIQIHQIESQ 634
            + E++  + +     E E++ IL S L       +V  ++ + + +
Sbjct: 1492 RAELQAALEEAEGSLEHEESKILQSQLELNQVKADVERKLSEKDEE 1537



 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 86/274 (31%), Gaps = 34/274 (12%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
            M+ +    +          +L   +K  +   + +K          ++L++  +K  +  
Sbjct: 767  MVIQWNLRSFLGVKNWPWMKLFFKIKPLLKSAEAEKEMASMKDEF-NKLKEALEKSESRR 825

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
                       + ++       L      +         R   L+ + I+  A L+E  +
Sbjct: 826  KELEEKIVTLLQEKN------NLTLQIQSEQDTLTDAEERCEQLIKSKIHLEAKLKEMAE 879

Query: 504  ELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEI-------HQRLCERGFGELLKQ--- 552
             L D    N +L      L  +  E +K     E+        +   E     L+++   
Sbjct: 880  RLEDEEEMNADLTAKRRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLIEEMAS 939

Query: 553  ----LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA- 607
                + +  ++        +  + D++    +A +L K    L +Q +++E  + Q    
Sbjct: 940  QDATIAKLSKEKKALQEAHQQTLDDLQSEEDKANSLSKAKAKLEQQVDDLEGSLEQEKKV 999

Query: 608  -----------KGEAEKTAILISILHEVHIQIHQ 630
                       +G+ +     +  L     Q+ +
Sbjct: 1000 RMDMERSKRKLEGDLKLLQESMMDLDNDKQQLEE 1033


>gi|16262452|ref|NP_065821.1| cingulin [Homo sapiens]
 gi|8308176|gb|AAF74498.1|AF263462_1 cingulin [Homo sapiens]
 gi|55959696|emb|CAI16590.1| cingulin [Homo sapiens]
 gi|119573819|gb|EAW53434.1| cingulin, isoform CRA_a [Homo sapiens]
 gi|156230640|gb|AAI52446.1| Cingulin [Homo sapiens]
 gi|158261037|dbj|BAF82696.1| unnamed protein product [Homo sapiens]
 gi|168278847|dbj|BAG11303.1| cingulin [synthetic construct]
          Length = 1203

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 75/208 (36%), Gaps = 11/208 (5%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLTL 491
           Q+ +         G    K    +D     + L +    K ++ ++  LRE  L  L   
Sbjct: 444 QVMELQNKLKHVQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALKGA 503

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           +    +     +     +    + ++L   +     +      E   ++        L +
Sbjct: 504 LKE-EVASRDQEVEHVRQQYQRDTEQLRRSMQDATQDHAVLEAE---RQKMSALVRGLQR 559

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALY----KRFRLLSRQKEEIEKQIAQVT- 606
           +L+    + G W +  + N  D+R   Q+ L L     +    L  + E +++++ Q   
Sbjct: 560 ELEETSEETGHWQSMFQKNKEDLRATKQELLQLRMEKEEMEEELGEKIEVLQRELEQARA 619

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
           + G+  +  +L   L     ++ +++++
Sbjct: 620 SAGDTRQVEVLKKELLRTQEELKELQAE 647



 Score = 38.3 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 83/226 (36%), Gaps = 23/226 (10%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + +  RLQ L Q+   +        ++     ++    +  +       +L      R 
Sbjct: 936  KELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEKVSRLETELDEEKNTVELLTDRVNRG 995

Query: 485  A----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDFVEQKY 531
                  L   L+   +  Q+   +   +   N +L+ +L S           S    Q  
Sbjct: 996  RDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQ 1055

Query: 532  FLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             L E +     E+       ++L+R+V++  +       ++ D +        L  R + 
Sbjct: 1056 LLQERLQAEEREKTVLQSTNRKLERKVKELSIQIEDERQHVNDQKDQ------LSLRVKA 1109

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
            L RQ +E E++I ++   G  +K    +   HEV+ Q+  +I+S E
Sbjct: 1110 LKRQVDEAEEEIERLD--GLRKKAQREVEEQHEVNEQLQARIKSLE 1153


>gi|269115148|ref|YP_003302911.1| Lmp related protein [Mycoplasma hominis]
 gi|268322773|emb|CAX37508.1| Lmp related protein [Mycoplasma hominis ATCC 23114]
          Length = 694

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/285 (10%), Positives = 91/285 (31%), Gaps = 24/285 (8%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P    +C      ++        +  L  + ++       +     E   K   +   ++
Sbjct: 21  PVLASKCTVTVKVKEKFNALKSQLQNLISKLSDEEQQELNEWLVNQEREFKGDNSQGDNE 80

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR---DQKGPSQRLMQSSLVKGK 475
            ++      I +++  L +K   +         +N       +Q   S++ +Q+ +    
Sbjct: 81  IIKN-----IEEKINVLTKKINEQKKQNSPSKDENKELNIAIEQLKKSKQELQNLIDFSA 135

Query: 476 LSKKPSLREAALL-LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                + +   +L  T I   + + E  ++   I     +LQ L     +    +     
Sbjct: 136 DQGIENSKAKEILDSTNIEENSSISEVKEKTNKINKAKQDLQNLIEDTKNKAKNEFDIKK 195

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           +E+   +       + K  ++ V +    + ++  +             +  + +++   
Sbjct: 196 QELKTLIESEKARNIDKSEEQNVLNTTNVAESSNISD------------IKSKTKIIEEA 243

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              + K+I +   K E E+         ++  ++ ++ +     E
Sbjct: 244 INSLTKKINEQKNKQEFEQAKQDFE---KIKKELQELIATPDAKE 285


>gi|189537675|ref|XP_694227.3| PREDICTED: centrosomal protein of 152 kDa-like [Danio rerio]
          Length = 1560

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 75/232 (32%), Gaps = 10/232 (4%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +D  +R    Q    RL+   Q+                  + ++   QR+++    +  
Sbjct: 964  RDAWIRD--KQEDMSRLRVQLQREHKHKLQAVLEQNLEQTGKQRETELQRVIREKEQEWS 1021

Query: 476  LSKKPSLRE--AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
              ++  L+E    LL  L+       ++ +E  +   D    +     +    + Q    
Sbjct: 1022 GEQESRLQEERQKLLEELLQDLKEALQEGEERRESPEDTETTRSRVWEICRQSLSQAKQE 1081

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-----F 588
             E+  +    R   E  ++ + ++      S        +     Q+     +R      
Sbjct: 1082 WEKSSEDKLRRVLKEAQERHEAEIAGLRKQSECGSPACAEALSKLQKKNQDLQRHLEKAC 1141

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            R L R   E +  + ++  + EA         L  +  ++ Q  + EA+  G
Sbjct: 1142 RQLQRSVREHKNTLQRIKDEHEAALQKEQQRHLKALE-ELKQTSNAEALTSG 1192


>gi|115527082|ref|NP_005954.3| myosin-1 [Homo sapiens]
 gi|226694176|sp|P12882|MYH1_HUMAN RecName: Full=Myosin-1; AltName: Full=Myosin heavy chain 1; AltName:
            Full=Myosin heavy chain 2x; Short=MyHC-2x; AltName:
            Full=Myosin heavy chain IIx/d; Short=MyHC-IIx/d; AltName:
            Full=Myosin heavy chain, skeletal muscle, adult 1
 gi|119610411|gb|EAW90005.1| hCG1986604, isoform CRA_b [Homo sapiens]
          Length = 1939

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1565 IQLELNQVKSEVDRKIAEKDEEIDQMKRNHIRIVESMQSTLDAEIRSRNDAIRLKKKMEG 1624

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1625 DLNEMEIQLNHANRMAAEALRNYRNTQAILKDTQLHLDDAL-----RSQEDLKEQ--LAM 1677

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1678 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1737

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1738 ISQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1797

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1798 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1829


>gi|109731497|gb|AAI14546.1| Myosin, heavy chain 1, skeletal muscle, adult [Homo sapiens]
          Length = 1939

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1565 IQLELNQVKSEVDRKIAEKDEEIDQMKRNHIRIVESMQSTLDAEIRSRNDAIRLKKKMEG 1624

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1625 DLNEMEIQLNHANRMAAEALRNYRNTQAILKDTQLHLDDAL-----RSQEDLKEQ--LAM 1677

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1678 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1737

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1738 ISQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1797

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1798 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1829


>gi|254588083|ref|NP_001156985.1| discs large homolog 5 isoform 1 [Mus musculus]
          Length = 1921

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/331 (9%), Positives = 89/331 (26%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +        +     
Sbjct: 303 YDTAMDKLEVVKKDYDALRKRYSEKVAMHNSDLSRLEQLGEENQRLQKQTEMLTQQRDTA 362

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E           +          
Sbjct: 363 IQLQHQCALSLRRFETIH--HELSKATAQNKDLQWEMELLQSELTELRSKQVKTAKESEK 420

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
               +D      Y   + +R Q + +    +        K  +   ++K  S+ +     
Sbjct: 421 YKEERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAASEEMEALRQ 479

Query: 472 VK--GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +K    +    + +E  +L                         + + L   L     E 
Sbjct: 480 IKDTVTMDAGRANKEVEILR-----------------------KQCKALCQELKEALQEA 516

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 517 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 573

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+       +  +   L++ 
Sbjct: 574 DVSRELKELKEQME--CQLEKEARFRQLMAH 602


>gi|94270266|ref|ZP_01291694.1| hypothetical protein MldDRAFT_2241 [delta proteobacterium MLMS-1]
 gi|93450876|gb|EAT01893.1| hypothetical protein MldDRAFT_2241 [delta proteobacterium MLMS-1]
          Length = 697

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 72/197 (36%), Gaps = 28/197 (14%)

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYF 532
           L       E  L   L +   +++++  E   +   N E ++L +++     +       
Sbjct: 439 LDPVMLPMEGLLDNLLAHQLWLVEKRADE--AMEQANQEYERLSAWIDSEEDEEFSHNLE 496

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-------- 584
             E++ Q+L +R + +L   +  + R   L     +   +D        +AL        
Sbjct: 497 SLEKLRQQLEKRSYFDLFD-VAEKARALRLAGPRLQETKLDSLNEEIDQVALGWEKIHDF 555

Query: 585 -------------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                         +R R   R   +  ++ A+   +G  +K     + L  V+ ++ ++
Sbjct: 556 WQDYPYKGFWPQMEERLRGTRRLLVDARREAAKSLRQG-RQKLNTARARLKAVNARVARM 614

Query: 632 ESQEAMIEGFGKMSGRL 648
           +  + +++G     GRL
Sbjct: 615 QRLQLVMDGLRIFVGRL 631


>gi|70605899|ref|YP_254769.1| hypothetical protein Saci_0046 [Sulfolobus acidocaldarius DSM 639]
 gi|68566547|gb|AAY79476.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 581

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 73/217 (33%), Gaps = 10/217 (4%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           D L     +   E    G+ + +  +    +   ++ + +      L    S  E  L+ 
Sbjct: 53  DLLNVFSDEGFVEIEMDGKKYFRRLKRIKNRILEEKNLIADDKNATLLSYFSP-ENPLIA 111

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-----LPEEIHQRLCER 544
            +I     ++      + I       + L   L                 ++I   L   
Sbjct: 112 RIITGDENIEWFISSTSRIDELKRRRESLIMKLEEVKSNYNNLLRTYDDIKKIANELENI 171

Query: 545 GFGELLKQLDRQVRDAGLWSATTEA--NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                +++L+++  +  + +  T        + +  ++  A  K  +    + +++ +++
Sbjct: 172 NLE--IERLEKEKENVTVQTEQTIKITRQNRIVEIRERIQAKIKELKEKETKIQKLTQEL 229

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++  K   E    L   + E+  ++  + +++  IE
Sbjct: 230 EELKGKANIELKDKLTKEIQEIDRELDSLINRQNSIE 266



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 92/290 (31%), Gaps = 35/290 (12%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                EK         +   K   +NR     +        LK     I          Q
Sbjct: 174 EIERLEKEKENVTVQTEQTIKITRQNRIVEIRERIQAKIKELKEKETKI----------Q 223

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            +   L++L  K   E         +          +++                ++EA 
Sbjct: 224 KLTQELEELKGKANIELKDKLTKEIQEIDRELDSLINRQNSIEIEQGVLTRILQDIQEAE 283

Query: 487 LLLTLIN-------HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            + + +         P + + +++ +       NEL +  + + ++  ++K    E + +
Sbjct: 284 RIHSSMCPVCGSKVEPDLWKVRFETVKKDI---NELDRTKNDIINNINKKKMRRSELLQK 340

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY-------------- 585
                   EL+ Q  + + +  + ++     I  +++  +                    
Sbjct: 341 VKEIERTEELIAQKSKALENLNIEASVINRTIEALQKQLKSLEERVESTYEVESKDNDID 400

Query: 586 KRFRLLSRQKEEIEKQIAQVT-AKGEAEKTAILISILHEVHIQIHQIESQ 634
           KR   L +++ ++E Q+ Q+   K  AE+   L   + +++ QI  I  +
Sbjct: 401 KRIEELRKRRSDLELQLQQLGIPKKVAEEIESLKKQIDDINKQIDDINRE 450


>gi|74188686|dbj|BAE28082.1| unnamed protein product [Mus musculus]
          Length = 1921

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/331 (9%), Positives = 89/331 (26%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +        +     
Sbjct: 303 YDTAMDKLEVVKKDYDALRKRYSEKVAMHNSDLSRLEQLGEENQRLQKQTEMLTQQRDTA 362

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E           +          
Sbjct: 363 IQLQHQCALSLRRFETIH--HELSKATAQNKDLQWEMELLQSELTELRSKQVKTAKESEK 420

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
               +D      Y   + +R Q + +    +        K  +   ++K  S+ +     
Sbjct: 421 YKEERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAASEEMEALRQ 479

Query: 472 VK--GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +K    +    + +E  +L                         + + L   L     E 
Sbjct: 480 IKDTVTMDAGRANKEVEILR-----------------------KQCKALCQELKEALQEA 516

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 517 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 573

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+       +  +   L++ 
Sbjct: 574 DVSRELKELKEQME--CQLEKEARFRQLMAH 602


>gi|325091299|gb|EGC44609.1| RNA polymerase Rpb1 C-terminal repeat domain-containing protein
           [Ajellomyces capsulatus H88]
          Length = 1350

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/351 (9%), Positives = 107/351 (30%), Gaps = 33/351 (9%)

Query: 284 LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343
            +      +   + + +    Y +  +   +  ++   +G         K    V  +  
Sbjct: 333 AAAHHYLHEPSPAPISSPHYSYNIPGVHPYANPMIPPHNGVSFDPHTVGKMAVTVPSYHT 392

Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
           P              P    R   + ++ +   ++    D    RE         ++  +
Sbjct: 393 PVRSSTMDSPYT---PYHHARRSSRASYGRGYADAYYNNDYGPVREPAPVQPPVIEDGRD 449

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
              + +     +  +         I   +     +     +    + +  A+H +     
Sbjct: 450 ASKNGEGLNISLLSRI--QSIIPDISQLVISYRDQQTQLSAREAEHKQIEAQHEESLMRK 507

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           +  +++   + + +   S +E               +    + ++R++   LQ+      
Sbjct: 508 EYYIEALQTQMQKTANESAKE-------------CSKLKGRINELRFELGGLQE-----K 549

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               E+     ++ +  L  +   +L +++D   R         E  +   R+  ++A  
Sbjct: 550 QKDAEESLADAQKENDEL-SQLREDLQEEIDNLQRAIQEEKEAHEQELERQREKEKEA-- 606

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                  L  QK+++E    ++  + +      L +   E+  +  +++++
Sbjct: 607 -------LDNQKQDLEGYFQEIKNEDDRLAAEQLQAREQELTDERDKLKAE 650


>gi|319759209|gb|ADV71151.1| replicative DNA helicase [Streptococcus suis JS14]
          Length = 451

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 7/155 (4%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            L + ++  +  L E ++L  +      L    + +    +  +  + ++  + +     
Sbjct: 3   ELDELRVQPQDILAEQSVLGAIFLDEGKLVFVREYIEAEDFFKHAHKLIFKAMIALSDRN 62

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +      +   L   G       L+     A L    +        + Y + +A     R
Sbjct: 63  EAIDATTMRNYLVNHG------DLENIGGLAYLAEIISSVPTAANAEFYAKIVAEKSNLR 116

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            L  +  +   Q  + T  G  +  A     L +V
Sbjct: 117 KLIARLTDAVNQAYEGTD-GSDDIIANAEKALIDV 150


>gi|289621986|emb|CBI51164.1| putative myosin group protein [Sordaria macrospora]
          Length = 2385

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 94/283 (33%), Gaps = 12/283 (4%)

Query: 357  EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT--PDERAELEIHLKNCINH 414
            ED  +        A  K + + L    M   RE ++R       + + +      N +  
Sbjct: 1239 EDAQADQNRQVLEAQIKDLKDELYNAQMELSRERQSRDDVQLLGEHKFQTLKDEFNSLKE 1298

Query: 415  IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
             K    +  Y+Q    R     +  + +     R   +  R    +    R     L + 
Sbjct: 1299 SKIAIEKELYAQQDTLRRAVETRATLEQERDDAREEIRRLRSAMTQAEEARREAEVLGER 1358

Query: 475  KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS--DFVEQKYF 532
              +K    RE +LL  L      L+    E A + Y   +L K+   +    +F  +   
Sbjct: 1359 AATKIAREREESLLKDLDAANDKLKWYESECAKLNYQVEDLNKV---IIESGEFGLKNDQ 1415

Query: 533  LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFR 589
              E + + L          + D +     L     E      R G     Q + + +   
Sbjct: 1416 AKERLERELNTVRSRLAASENDNRTLLNKLQQKGLEIARSASRAGEASRAQLIQVQREKT 1475

Query: 590  LLSRQKEEIEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQ 630
             +  Q  ++ KQ+  +QVT  G  +K   L   + +++ ++ +
Sbjct: 1476 RVEEQNTKLNKQLGDSQVTVAGLEKKVEKLQLTIEDLNHELAR 1518


>gi|281347270|gb|EFB22854.1| hypothetical protein PANDA_014131 [Ailuropoda melanoleuca]
          Length = 1065

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 598 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 657

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 658 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 705

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 706 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 754

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 755 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 814

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 815 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 867


>gi|254504252|ref|ZP_05116403.1| Bacterial NAD-glutamate dehydrogenase superfamily [Labrenzia
            alexandrii DFL-11]
 gi|222440323|gb|EEE47002.1| Bacterial NAD-glutamate dehydrogenase superfamily [Labrenzia
            alexandrii DFL-11]
          Length = 1603

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 86/285 (30%), Gaps = 22/285 (7%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
               A +     +   +++  K            +  +    L +  + + D  LR  Y Q
Sbjct: 1159 NSDAIDNSAGVNSSDMEVNIKIALGAAVKAGKLDIEQRNELLAHMTDEVADLVLRNNYLQ 1218

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             +   +     + + +     R  ++  R        ++L     +  +L     L   A
Sbjct: 1219 TLA--ISMTHLQGMEDFGYQVRMMRQLEREGLLDRVVEQLPDDVQLD-ELRSAGQLLTRA 1275

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--RLCER 544
             L  L+ +  I    Y  + +    +++   L   LF  F ++     E      RL   
Sbjct: 1276 ELGVLLAYAKI--TLYDAILESSVPDDDY--LARELFRYFPDEMAADYEGEINGHRLRRE 1331

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                +L         A   +   +       +  Q  +A+   +        E+  +I +
Sbjct: 1332 IISTMLANSMVNRGGATFITRLMDQTGATTTEIAQGFVAVRNSYG-----LTELNGEIDR 1386

Query: 605  VTAKGEAEKTAILISILHEV--------HIQIHQIESQEAMIEGF 641
            +  K + E    L S +  +           +   +   A++E F
Sbjct: 1387 LDTKIDGELQLELYSEVQSLLLERVVWFKRNVSFEKGLAAVVERF 1431


>gi|221484808|gb|EEE23102.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 1213

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/206 (12%), Positives = 62/206 (30%), Gaps = 6/206 (2%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            ++++LR    +   +R+  L +   +         +K    +  +   QRL ++   + +
Sbjct: 879  ENRRLRASIERLETERMSLLERTEKSRVEFLALVAEKGRSDKQARDALQRLAEAESQQER 938

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLP 534
             ++   L    L   L      ++    EL          ++ +S L S           
Sbjct: 939  STQALKLHAQDLEERLAKKEEQVRSLRGELEAAIVRAEAAEREFSRLRSSLSLASGPADF 998

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                          +    +                     +  +      +R + LSR+
Sbjct: 999  AAGFPAFSSEEASTVAASEEHSKHAKEAQLQLVLLLAECAEESLR---MSAQREKQLSRE 1055

Query: 595  KEEIEKQIAQVTAKGEA--EKTAILI 618
              E+E+Q+ +     +   E+   L+
Sbjct: 1056 VTELERQLDRALQTMDEASEQAEALL 1081


>gi|189007784|gb|ACD68202.1| muscle myosin heavy chain [Sepia esculenta]
          Length = 1936

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/257 (9%), Positives = 81/257 (31%), Gaps = 9/257 (3%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  +E    +     K +       + +   + +L       
Sbjct: 1573 DRRLQEKEEEFDNTRRNHQRAIESMQASLEAEAKGKAEALRIKKKLEGDINELEIALDAT 1632

Query: 443  HSGYGRYWKKNARHRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            + G     K   +++ Q      ++ +    + +  +   + E             L+E 
Sbjct: 1633 NRGKAELEKNVKKYQGQIRELQSQVEEEQRQRDEAKEHYQMAERRCAAI----NGELEEL 1688

Query: 502  YQELADIRYDNNELQ-KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
               L          + +L          Q         +R  ER    +   LD    + 
Sbjct: 1689 RTILEQAERARKAAENELADASDRVNELQAQVSTANSQKRKLERDIAAMQSDLDELNHEL 1748

Query: 561  GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI-- 618
                  ++  + D  +   +          + + ++ +E Q+ ++  + +  ++A L+  
Sbjct: 1749 KDADDRSKIALADATRLADELRQEQDHGLSIEKMRKSLESQVKELQVRLDESESAALLGG 1808

Query: 619  -SILHEVHIQIHQIESQ 634
              ++ ++  ++ ++E++
Sbjct: 1809 KKMIQKLESRVRELEAE 1825


>gi|146351321|ref|YP_001210548.1| putative telomere-associated protein [Arthrobacter
          nitroguajacolicus]
 gi|146218885|emb|CAL09956.1| putative telomere-associated protein [Arthrobacter
          nitroguajacolicus]
          Length = 1707

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 6/36 (16%)

Query: 39 YWACCPFHDEKTPSFHCNDSKG-----FYYCFSCHV 69
          + ACCP H +  PS      K       + C SC  
Sbjct: 35 FMACCPVHGDNNPSLSVTYKKDTGLTTMW-CHSCQA 69


>gi|157867349|ref|XP_001682229.1| kinesin [Leishmania major strain Friedlin]
 gi|68125681|emb|CAJ04095.1| putative kinesin [Leishmania major strain Friedlin]
          Length = 2257

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 50/130 (38%), Gaps = 15/130 (11%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR--QGYQQALALY 585
           +Q      E+  R  +    +             +         ++ R  +     LAL+
Sbjct: 366 QQAKQDGSELGDRWRDEYLRKKEALYAEYQLKGTIEKLLARIAELEARLRECADDELALH 425

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQ-EAMI 638
                L+ + EE++K + +   +   +      +  +L   L E++ ++ +++ + E  +
Sbjct: 426 -----LTTEIEELQKALTEADYQMGLQRQILYGEFLMLEDELRELNTKMQEMKEEHEEAM 480

Query: 639 EG-FGKMSGR 647
           EG  G+ +GR
Sbjct: 481 EGLLGEEAGR 490


>gi|268560562|ref|XP_002646239.1| C. briggsae CBR-UNC-15 protein [Caenorhabditis briggsae]
 gi|187029783|emb|CAP30993.1| CBR-UNC-15 protein [Caenorhabditis briggsae AF16]
          Length = 872

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 89/273 (32%), Gaps = 23/273 (8%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D   +            E+          +      +   +R  L+    + +  + DQK
Sbjct: 163 DQLQKDKHTAEKAAERFEAQANELANKVEDLGKHVNDLAQQRQRLQAENNDLLKEVHDQK 222

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           ++    Q ++  L Q  ++         R   +      Q       ++++L +  +++ 
Sbjct: 223 VQLDNLQHVKYTLAQQLEEARRRLEDAERERSQLQSQLHQVQLELDSVRTALDEESVARS 282

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +          + +  I Q + +  A++   + E++ L   +     E           
Sbjct: 283 DAEH-----KLNLANTEITQWKSKFDAEVALHHEEVEDLRKKMLQKQAEY---------- 327

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              E     +L+++ +  +      +  E  IVD+ +       L +    L RQ  E++
Sbjct: 328 ---EEQIEIMLQKISQLEKAKSRLQSEVEVLIVDLEKAQNTIAILERAKEQLERQVGELK 384

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +I ++  +            L   + ++ +++
Sbjct: 385 VRIDELNVE-----LEAAQRELRAANAELQKMK 412


>gi|46201582|ref|ZP_00208157.1| COG1186: Protein chain release factor B [Magnetospirillum
           magnetotacticum MS-1]
          Length = 371

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 37/118 (31%), Gaps = 3/118 (2%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +        + + L        L +L+    +  LW+         + +      
Sbjct: 5   IEALAQDIRRSAALLKRHLNWDEALMRLDELNASAENPDLWNDA--GAAQKIMRERNDLD 62

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           +  +  R L R+  ++ + I     +G+          +  V  +  ++E  E ++ G
Sbjct: 63  SAIQGCRALERELADLIELIELGEMEGDQTVIDDAEEQIRAVKERAAKME-LETLLSG 119


>gi|74623236|sp|Q96U60|NDC80_NEUCR RecName: Full=Probable kinetochore protein ndc-80
 gi|16945423|emb|CAD11783.1| conserved hypothetical protein [Neurospora crassa]
          Length = 743

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 80/242 (33%), Gaps = 17/242 (7%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQAIRDRLQQLFQKYITEHS 444
                +         R + +         I  DQ +  + + A +D L    +    +  
Sbjct: 258 LHWMMQLAQMLEGYARHQYDDACMEAGVDIAGDQIIFDFLTSAYQDWLNMDDEAGDEDVE 317

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
              +   +      ++  ++ + +  +++G+      L+E   L      PAIL   ++ 
Sbjct: 318 RALQPHVQGMAEAFERSNAKYIQELEILEGE--NARLLKEIQELEKSTPDPAILDNHFKI 375

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
           + + +    E   L       +  +   L EE+            LK+ + + R      
Sbjct: 376 MEEDKIKFEEYNTLAMQRTEKYENRIQVLREEL------GKLHVELKEAEEERRQMQKAV 429

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
                ++ D+ +   +   L +     S++ E+++K++A        E+       L E+
Sbjct: 430 DDQGISMQDIDRMTSERERLQRSIESASQRLEDVKKKVA--------EREMEASQRLDEL 481

Query: 625 HI 626
             
Sbjct: 482 ER 483


>gi|332234879|ref|XP_003266631.1| PREDICTED: transcription elongation regulator 1-like isoform 1
           [Nomascus leucogenys]
          Length = 1071

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 604 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 663

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 664 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 711

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 712 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 760

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 761 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 820

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 821 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 873


>gi|322490482|emb|CBZ25742.1| putative kinesin [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1034

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 97/310 (31%), Gaps = 22/310 (7%)

Query: 352 LLSRGEDPDSFIRCYGKTAF----EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
            + + EDP   +    +       ++L           + +  E +      + A+ E  
Sbjct: 497 WVKKNEDPQVVLIRELREQVVDLEQRLKEAGGSNYTNEYVQGLEKKLHQLEKKCADQERI 556

Query: 408 LKNC-----INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
           +           I D  +   Y      R ++   +   E S   +  K      + K  
Sbjct: 557 IAGLRAQLEFAGIADPTVAEGYLDP-ATRAKEDQHRAKAEESMRKQLDKAQIAIAELKAE 615

Query: 463 SQRLMQSSLVKG-KLSKKPSLREAALLLTLINHPAI---LQEQYQELADIRYDNNELQKL 518
            +    +   +  K+ K+   ++ A LL L    ++   L+  +  +  +     + + L
Sbjct: 616 LEHRGAAIEPEALKVMKEKLQKQDAQLLLLATEVSLHRRLRSHFDNIDTVMELVKDKEAL 675

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                +  +         + + L ER       +   +   A       E     + +G 
Sbjct: 676 LLRACNGVLIANNESAAMLGKMLSEREDDLRNTKRLHEEELATQAERFCERLKEALDEGA 735

Query: 579 QQALALYKRFRLLSRQKE-EIEK--QIAQVTAKGEAEKTAILISILHEVHIQIH-----Q 630
            Q   L  R R    Q E  +++  +I ++  K   ++   L   +     ++      +
Sbjct: 736 VQQQQLLDRHREAVAQLEGRLQRSHEINEMERKRNDKEKEELRQRVQLAQERMRNEYQQE 795

Query: 631 IESQEAMIEG 640
           IE   A +EG
Sbjct: 796 IERLRARVEG 805


>gi|297298033|ref|XP_002805134.1| PREDICTED: nesprin-2-like [Macaca mulatta]
          Length = 6810

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 87/280 (31%), Gaps = 20/280 (7%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+         +   L      ++   + +   ++  N  D    ++++LK C    + +
Sbjct: 1775 PELSELKKQYESVSDLFNTKKSVLQDHFSKLLNDQCKNFNDWFNNIKMNLKECFESSETK 1834

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            K      Q + D L    +    +         K    + +       +     + +  +
Sbjct: 1835 KSVEQKLQKLSDFLTLEGRNSKIKQVDSVLKHVKKHLPKARVKELTSWLVGQEFELEKME 1894

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                                +E    L  +    ++ + L  ++ +   + K        
Sbjct: 1895 SICQA-------------RAKELEDSLQQLLRLQDDHRNLSKWMTNQEEKWKGMEESGEK 1941

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
              L       L ++ ++    A L ++  E    +      ++  L  R++ L RQ  EI
Sbjct: 1942 TEL---FCQALARKSEQFESVAQLNNSLKEYGFTEEEDIIMESTCLMDRYQTLLRQLSEI 1998

Query: 599  EKQIAQVTAKGEA---EKTAILISILHEVHIQIHQIESQE 635
            E++  ++    +    +    +I  + E+   +  + S E
Sbjct: 1999 EEE-DKLPPTEDQRFNDLAHDVIHWIKEIKESLMVLNSSE 2037


>gi|288926519|ref|ZP_06420438.1| toprim domain protein [Prevotella buccae D17]
 gi|288336731|gb|EFC75098.1| toprim domain protein [Prevotella buccae D17]
          Length = 687

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 41/364 (11%), Positives = 103/364 (28%), Gaps = 39/364 (10%)

Query: 44  PFHDEKTPSFHCNDSKG----FYYCFSCHV-KGDHLSFLSALLGCSFIESVQRLAAIAGV 98
           P +D+K  S +    +         F      GD   F                A + G+
Sbjct: 35  PLYDDKRASCNIYLDRKSDCYRMKDFGNDAYSGDCFWF---------------AATMTGL 79

Query: 99  PLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158
            +             + D ++++E         L     K+  +      +      + +
Sbjct: 80  DV-------------KKDFVKVLETIIR--DLQLNIYIGKQERFEQRSTIMKPPKPPISQ 124

Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218
               P      +     +     + ++       D++       ++   +   S++G+  
Sbjct: 125 PADQPKLMEEKKWFKLIEQSFGIEEMKYWQQYGIDSNTLQRFHVKSLARYESISNQGKPF 184

Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278
             G     +     Y       ++     L   +G               +    I +  
Sbjct: 185 TLGSTN--EEPMFAYNMGAFVKIYRPKSKLRFLYGGEKVTDYVFGFQQLPSKGDIIFITG 242

Query: 279 GYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           G  DVLSL   G   +  +     + E  +  L      I++ +D D+ G+R A +  + 
Sbjct: 243 GEKDVLSLSAHGFNAICFNSETAEIPENIIEGLQLRFRHIIILYDTDETGIREAKQQTNA 302

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFI-RCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
           ++ + +    +    +   +D   F          + L+ +    +        ++   +
Sbjct: 303 LIQYKVLSLTLPLQGIKSEKDISDFFALGNNSNDLKALLSDMFTNMYSQTMMILKSCEID 362

Query: 397 TPDE 400
             + 
Sbjct: 363 YDNP 366


>gi|164428423|ref|XP_964712.2| hypothetical protein NCU00551 [Neurospora crassa OR74A]
 gi|157072143|gb|EAA35476.2| hypothetical protein NCU00551 [Neurospora crassa OR74A]
          Length = 2401

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 95/283 (33%), Gaps = 12/283 (4%)

Query: 357  EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT--PDERAELEIHLKNCINH 414
            ED  +        A  K + + L    M   RE ++R       + + +      N +N 
Sbjct: 1238 EDAQADQNRQVLEAQIKDLKDELYNAQMELSRERQSRDDVQLLGEHKYQTLKDEYNHLNE 1297

Query: 415  IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
             K    +  Y+Q    R     +  + +     R   +  R    +    R     L + 
Sbjct: 1298 SKITIEKELYAQQDTLRRAVETRTTLEQERDDAREEIRRLRSAMTQAEEARREAEVLGER 1357

Query: 475  KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS--DFVEQKYF 532
              +K    RE +LL  L      L+    E A + Y   +L K+   +    +F  +   
Sbjct: 1358 AATKIAREREESLLKDLDAANDKLKWYESECAKLNYQVEDLNKV---IIESGEFGLKNDQ 1414

Query: 533  LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFR 589
              E + + L          + D +     L     E      R G     Q + + +   
Sbjct: 1415 AKERLERELNTVRSRLAASENDNRALLNKLQQKGLEIARSASRAGEASRAQLVQVQREKT 1474

Query: 590  LLSRQKEEIEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQ 630
             +  Q  ++ KQ+  +QVT  G  +K   L   + +++ ++ +
Sbjct: 1475 RVEEQNTKLNKQLGDSQVTVAGLEKKVEKLQLTIEDLNHELAR 1517


>gi|114602560|ref|XP_001158020.1| PREDICTED: transcription elongation regulator 1 isoform 3 [Pan
           troglodytes]
          Length = 1063

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 596 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 655

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 656 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 703

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 704 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 752

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 753 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 812

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 813 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 865


>gi|114602556|ref|XP_001158244.1| PREDICTED: transcription elongation regulator 1 isoform 5 [Pan
           troglodytes]
          Length = 1083

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 616 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 675

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 676 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 723

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 724 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 772

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 773 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 832

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 833 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 885


>gi|109079186|ref|XP_001101519.1| PREDICTED: transcription elongation regulator 1 isoform 5 [Macaca
           mulatta]
          Length = 1075

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 608 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 667

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 668 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 715

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 716 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 764

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 765 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 824

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 825 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 877


>gi|50510881|dbj|BAD32426.1| mKIAA1319 protein [Mus musculus]
          Length = 1240

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 64/169 (37%), Gaps = 9/169 (5%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKY 531
           K ++ ++  LRE  L          +    QE+  +R     + ++L   +     +   
Sbjct: 520 KQRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAA 579

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              E   ++       EL ++L+    + G W +  + N  ++R   Q+ L L      +
Sbjct: 580 LEAE---RQKMSSLVRELQRELEETSEETGHWQSMFQKNKEELRATKQELLQLRMEKEEM 636

Query: 592 SRQKEE----IEKQIAQVTAK-GEAEKTAILISILHEVHIQIHQIESQE 635
             +  E    +++ + Q  A   +  +   L   L     ++ ++++++
Sbjct: 637 EEELGEKMEVLQRDLEQARASTRDTHQVEELKKELRRTQGELKELQAEQ 685



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 99/291 (34%), Gaps = 25/291 (8%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y + A +++        D   + E  +   +   +  +            +D  
Sbjct: 910  QAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTA 969

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                  + +  RLQ L Q+   +        ++     ++    +  +       +L   
Sbjct: 970  RLD--KELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTD 1027

Query: 480  PSLREA----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDF 526
               R       L   L+   +  Q+   +   +   N +L+ +L S           S  
Sbjct: 1028 RVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQL 1087

Query: 527  VEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
              Q   L E +     E+       ++L+R+V++  +       ++ D +        L 
Sbjct: 1088 ESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQ------LT 1141

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
             R + L RQ +E E++I ++ +  +       +   HEV+ Q+  +I+S E
Sbjct: 1142 LRVKALKRQVDEAEEEIERLDSLRKKA--QRELEEQHEVNEQLQARIKSLE 1190


>gi|91208418|ref|NP_001035095.1| transcription elongation regulator 1 isoform 2 [Homo sapiens]
 gi|84627476|gb|AAI11728.1| Transcription elongation regulator 1 [Homo sapiens]
 gi|208967951|dbj|BAG73814.1| transcription elongation regulator 1 [synthetic construct]
          Length = 1077

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 610 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 669

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 670 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 717

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 718 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 766

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 767 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 826

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 827 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 879


>gi|4808815|gb|AAD29951.1| myosin heavy chain IIx/d [Homo sapiens]
          Length = 1939

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1565 IQLELNQVKSEVDRKIAEKDEEIDQMKRNHIRIVESMQSTLDAEIRSRNDAIRLKKKMEG 1624

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1625 DLNEMEIQLNHANRMAAEALRNYRNTQAILKDTQLHLDDAL-----RSQEDLKEQ--LAM 1677

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1678 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1737

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1738 ISQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1797

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1798 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1829


>gi|34228|emb|CAA27173.1| unnamed protein product [Homo sapiens]
 gi|224901|prf||1203377A lamin A
          Length = 702

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ + ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|1346413|sp|P48679|LMNA_RAT RecName: Full=Prelamin-A/C; Contains: RecName: Full=Lamin-A/C;
           Flags: Precursor
          Length = 665

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|320041205|gb|EFW23138.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira]
          Length = 2223

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 78/212 (36%), Gaps = 23/212 (10%)

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            +  +   +      ++          + +     +   ++ ++    +A ++ +++NHP 
Sbjct: 1415 RSPLNRQNRLIEKIRQVVSESVTTNQTPKEPAPLVDLSEIHRRSEHLKAEIIDSIVNHPK 1474

Query: 497  ILQ-----EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
            + +      + ++   ++     LQ +   L  D  E++Y     I   L E       +
Sbjct: 1475 LAEMMRSSNEEKDAEKLQMQLEGLQSMLR-LADDRAEEEYKNRRRIQDSLAES------Q 1527

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQA-----LALYKRFRLLSRQKEEIEKQIAQVT 606
            +L +   D  +      A   +  + +++        L K+  LL+  +E ++  +++++
Sbjct: 1528 RLLKAAEDDAVRHRDAAAASEEALRTFKEQKLPEMERLEKQSALLNENQESLQLTLSELS 1587

Query: 607  AKGEAEKTAILISILHE----VHIQIHQIESQ 634
             K         +    E    +  Q+ ++E +
Sbjct: 1588 QKNIT--LQGTLDEYRETGDHLRSQLDEVEGE 1617


>gi|311259474|ref|XP_003128114.1| PREDICTED: WD repeat-containing protein 65-like [Sus scrofa]
          Length = 1250

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/367 (8%), Positives = 103/367 (28%), Gaps = 51/367 (13%)

Query: 306  QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
            ++  L   +   +   D +            L     +             +D    +  
Sbjct: 707  RVEELKMENEYQLRLKDMNYSEKIKELTDKFLQEMESLKTKNQVLRTEKEKQD---ILHR 763

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
                         L  ++    ++         + + + +   +     ++D        
Sbjct: 764  ERIDDLLDKQSRELQDLECCSNQKLLLEYEKYQELQLKSQRMQEEYEKQLRDN---DETK 820

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
                + L + ++  + E        +++ R + ++    +         ++    +  E 
Sbjct: 821  SQALEELTEFYEAKLQEKISLLEEAQEDVRQQLREFEETKKQIEEDEDREIQDIKTKYEK 880

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L           +++ +    ++ +   ++K +S L  +  E +    E +     +  
Sbjct: 881  KL-----------RDEKESNLRLKGETGIMRKKFSSLQKEIEE-RTNDIELLKG--EQVK 926

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQ 601
               ++K L++ +          +  I D  +         +       +L  + +E++KQ
Sbjct: 927  LQGVIKSLEKDILGLKREIQERDETIQDKEKRIYDLKKKNQELEKFKFVLDYKIKELKKQ 986

Query: 602  I--AQVTAKGEAEKTAILISIL-------------------------HEVHIQIHQIESQ 634
            I   +   K   E+   + + L                          E+  +  +    
Sbjct: 987  IEPRENEIKVMKEQIQEMEAELGRFHKQNTQLELNITELWQKLRATDQEMRRERQKERDL 1046

Query: 635  EAMIEGF 641
            EA+++ F
Sbjct: 1047 EALVKRF 1053


>gi|260752559|ref|YP_003225452.1| seryl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258551922|gb|ACV74868.1| seryl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 425

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           +   L    + L  ++ E+ +QI Q   +GE +K   + + +  +  ++  +E +EA +
Sbjct: 36  ERRTLALELQTLQTKRNEVSRQIGQAMKQGEKDKAEEMKAEVSAIKEKMAALEGEEAAL 94


>gi|257452616|ref|ZP_05617915.1| hypothetical protein F3_06064 [Fusobacterium sp. 3_1_5R]
 gi|257466473|ref|ZP_05630784.1| hypothetical protein FgonA2_03421 [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917630|ref|ZP_07913870.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059156|ref|ZP_07923641.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684832|gb|EFS21667.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313691505|gb|EFS28340.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 1275

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/271 (9%), Positives = 91/271 (33%), Gaps = 13/271 (4%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
           ++   S+  +    K +T++          E+++   +  + I++++ +   +  I  ++
Sbjct: 620 RIAKNSVVDMGRKLKYQTQDFHNPAKKIDMEIKMISDSIAHTIENKEEKEKENSLIEVKI 679

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL- 491
           +   +    + +   +   ++ R    +       + +        +   ++  L+  + 
Sbjct: 680 KDKIKALNEQENAVYQSIHRSGRLDILQPTLTTTNKKTTFNVADDDREEKKKTKLIHMIK 739

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
              P    E  +++       +  +     +      +     +E  ++  E       +
Sbjct: 740 TASPE---EVIEKVGQFHLSESSKKDAMERIRKIATSENMKKLKEKTEQFKELASSTEYQ 796

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           +LD   +   + +  +      +RQ              + R+ EE++K +  +  +   
Sbjct: 797 KLDFLRKSEEVENLNSGETWQALRQEIYD-------KATIERKIEEVKKVVNAIDQENIQ 849

Query: 612 EKTAI--LISILHEVHIQIHQIESQEAMIEG 640
           +       I  L ++   +  ++   A I+G
Sbjct: 850 KLAEKYPEIETLKKISSNLESLKETLASIKG 880


>gi|258564548|ref|XP_002583019.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237908526|gb|EEP82927.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1495

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 46/134 (34%), Gaps = 2/134 (1%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
             +E +K      +   + +    E I +   E    E  +  +         +   +A  
Sbjct: 1026 TSEAKKAEETALALRAKAQQEEKERILRHEQEAQGAERKRLEEEARYQEEELAREKQAAQ 1085

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIH 629
              ++   +Q      + +   R+K++ EK   +  A+   +  +     +   E+  Q+ 
Sbjct: 1086 ARLQALEEQVRQGKIKKQEEKRRKQQAEKDAKEKEARLAIQRAELEAAQARERELQRQLE 1145

Query: 630  QIESQEAMIEGFGK 643
             +  +E+  +  G 
Sbjct: 1146 NMGDEESSSDDEGP 1159


>gi|168214020|ref|ZP_02639645.1| replicative DNA helicase [Clostridium perfringens CPE str. F4969]
 gi|170714510|gb|EDT26692.1| replicative DNA helicase [Clostridium perfringens CPE str. F4969]
          Length = 431

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 61/164 (37%), Gaps = 6/164 (3%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A+L T+  +   + +   E+ +  + N + Q ++  +   + +   F    + ++L  
Sbjct: 12  EEAILGTVTANNKYMIKVIGEIEEKDFYNTKNQIIYRAISELYRKGIPFDLVVLSEKLSN 71

Query: 544 RGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL----YKRFRLLSRQKEE 597
                   L  +  +       +  +  NIV  +   ++ +            ++ + + 
Sbjct: 72  EVKSGAITLTDIAEKTSHVDYGTLLSHVNIVKEKSRERELVTACQMVISSDGNVNSKVDY 131

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           ++ ++ +V       K   +  +++    +I +  S +  I GF
Sbjct: 132 LQNKLLEVNQVSRKNKVMGIGDVMYTTLSEIEKAHSNKTGIRGF 175


>gi|146219837|ref|NP_034253.3| eukaryotic translation initiation factor 3 subunit A [Mus musculus]
          Length = 1344

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    +R A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIRPAHILQEKEEQHQLAVNAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|115692122|ref|XP_785810.2| PREDICTED: similar to myosin heavy chain [Strongylocentrotus
            purpuratus]
 gi|115960644|ref|XP_001177927.1| PREDICTED: similar to myosin heavy chain [Strongylocentrotus
            purpuratus]
          Length = 1956

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/259 (11%), Positives = 81/259 (31%), Gaps = 16/259 (6%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D     + E       +    +E    +    +K +       + +   +  L  +    
Sbjct: 1569 DRRIIEKDEEFEITRKNHERSMESMQASLEAELKAKSDAQRLKKKLEGEVNDLEIQLDHA 1628

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSL-VKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   + + Q    Q  +      +  +  +  + E   +  LI     ++  
Sbjct: 1629 NRNSAEAIKTIKKLQMQVKELQATVDEETRAREDMRDQLQITERRSM-MLIQELEEVRSA 1687

Query: 502  YQELADI-RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
             +    + +    +LQ     L     +      +   +R  E     L  +L+  + +A
Sbjct: 1688 LETTERLRKLAEGDLQDANDRLAEVSAQNHVLSNQ---RRKAEAELQTLTAELEDAINEA 1744

Query: 561  GLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA---KGE 610
                   +  I        ++R   + ++ + K  + L  Q ++++ ++ +  A   KG 
Sbjct: 1745 RNNDDNAKKAIADATRLADELRTEQEHSVQIEKFRKSLEVQIKDMQVRLDEAEAAALKGG 1804

Query: 611  AEKTAILISILHEVHIQIH 629
                  L + L ++  ++ 
Sbjct: 1805 RRTIEKLEARLRDLEGELE 1823


>gi|56551882|ref|YP_162721.1| seryl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761798|ref|ZP_04759884.1| seryl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|67461650|sp|Q5NNV0|SYS_ZYMMO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|56543456|gb|AAV89610.1| seryl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373712|gb|EER63272.1| seryl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 425

 Score = 42.2 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           +   L    + L  ++ E+ +QI Q   +GE +K   + + +  +  ++  +E +EA +
Sbjct: 36  ERRTLALELQTLQTKRNEVSRQIGQAMKQGEKDKAEEMKAEVSAIKEKMAALEGEEAAL 94


>gi|317419034|emb|CBN81072.1| TATA element modulatory factor [Dicentrarchus labrax]
          Length = 1167

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 19/181 (10%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +   Q      KL+     +E  L     +   + ++     A +     EL +L  
Sbjct: 679 GKEEVEKQHRENIKKLNAVVERQEKELSRLQTDDEELQEKNRSLQAALDNSYKELAELHK 738

Query: 521 F-------LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
                        + +     E++   L +      ++Q     + A L  A   A    
Sbjct: 739 ANASRASVAEEAALSRDTHAKEQLSLALEKAQEEARIQQAALAEQVADLRLALQRAEQQQ 798

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            R           +   L  +  E+++++ +       E +  + S    +  QI  +++
Sbjct: 799 AR-----------KEDYLREEISELQQRLQEAE-TRNQELSQSVTSATRPLLRQIENLQA 846

Query: 634 Q 634
            
Sbjct: 847 S 847


>gi|303236051|ref|ZP_07322654.1| ATP-dependent chaperone protein ClpB [Prevotella disiens
           FB035-09AN]
 gi|302483924|gb|EFL46916.1| ATP-dependent chaperone protein ClpB [Prevotella disiens
           FB035-09AN]
          Length = 863

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 86/318 (27%), Gaps = 55/318 (17%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + L  +DM              +    +   + N   +I        
Sbjct: 220 RIIRGDVPENLKDKQLYSLDMGALLAGAKYKGEFEERLKSVIKEVTNAEGNI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGGGEGAMDAANILKPALARGELRAIGATTLNEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQ---------EQYQELADIRYDNNELQKLWS----FLFSDFVEQK 530
           E      +++ P  L          E+Y+    +R  ++           ++   F+  K
Sbjct: 328 ERRFQTVMVDEPDELDAISILRGLKERYENHHKVRIQDDACIAAVQLSERYISDRFLPDK 387

Query: 531 YFLP-EEIHQRLC------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL- 582
                +E   +L            E+ ++L +   +        +   + +       L 
Sbjct: 388 AIDLMDEAAAKLRMERDSVPEELDEITRRLKQLEIEREAIKRENDTEKIALLDKEIAELK 447

Query: 583 --------------ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI--------LISI 620
                         AL  + +    + E ++ +  +   +G  E+ A         L   
Sbjct: 448 EQETSFKAKWEGEKALVNKIQQDKEEIEHLKFEAEKAEREGNYERVAEIRYSRLKALEDD 507

Query: 621 LHEVHIQIHQIESQEAMI 638
           +  + +Q+   +  EAMI
Sbjct: 508 IKNIQLQLQATQGGEAMI 525


>gi|296238768|ref|XP_002764298.1| PREDICTED: hypothetical protein LOC100405620, partial [Callithrix
           jacchus]
          Length = 446

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
             + + + E++     E  ++  +       LK+   Q  +    +      + D+    
Sbjct: 6   KTISAKYAEERDRAEAEAREKETKALSLARALKEAMEQKVEPERLNKQFRVEMEDIMSSK 65

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI--LHEVHIQIHQ 630
            +++   K  RLL +Q EE++ Q+ ++  + +  + A L     L  + IQ  +
Sbjct: 66  GKSVHELKSRRLLEQQVEELKTQLEELEDELQDTENANLRLEVNLQAMKIQFER 119


>gi|301114761|ref|XP_002999150.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262111244|gb|EEY69296.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 960

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 94/321 (29%), Gaps = 44/321 (13%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +D     +            E +   +   ++  +       +   + E   ++    I 
Sbjct: 621 QDDLKAQQNQALKDIGVKFAEQIRQKEDTTQKMRDAYESKLREVTMQCESMGQHMNKQIS 680

Query: 417 DQKLRYYYSQA-------IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             + R    Q        + D   +L +K            + ++   ++    ++ ++ 
Sbjct: 681 SLQQREALLQESRAKRGMLEDENSELKRKVQVLEIRIEEIAQTHSVAMEEMTLREKELEE 740

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQ-----YQELADIRYDNN----------- 513
              +          +   L   + H              EL + +  N            
Sbjct: 741 LREEMATISGDYTAQREQLE--LAHDETRVRYMRCRLEDELNEQKLTNENTYKELVLLSK 798

Query: 514 ELQKLWS----------FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
             + L             +  +    +      I  RL E+   EL +QL+R++      
Sbjct: 799 AHKALADEKKSIEGEVDAIRDEVASLESMNIS-IQSRLQEK--KELAEQLERKMARLDDA 855

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKE------EIEKQIAQVTAKGEAEKTAIL 617
           +A ++  + D R+  + A       R   R+ E      EI+    ++ A+ + E     
Sbjct: 856 AAVSKNALEDEREKRRAASRDLDDLRKAHRKLESDMAMLEIQAAEQRLVAESKDEHLRKC 915

Query: 618 ISILHEVHIQIHQIESQEAMI 638
              +  +  ++ +    +A+I
Sbjct: 916 EEEIRHLANEVGKQAKLQALI 936


>gi|298530251|ref|ZP_07017653.1| replicative DNA helicase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509625|gb|EFI33529.1| replicative DNA helicase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 925

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 7/145 (4%)

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           SG     K  ++   Q         SS +  ++  +    E A+L  +     +L     
Sbjct: 22  SGRSFKGKDASKRSGQDLSQSLGKVSSDLVKRMPPQNLEAEQAVLGGVFLSNEVLHTLVD 81

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER------GFGELLKQLDRQV 557
            L++  + +   + ++      +          +H+ L +       G    L  L   V
Sbjct: 82  VLSEEDFYSPAHRIVFRTFLELYRRNTPVDLVTVHEELEKTSQLESIGGAVYLASLTEAV 141

Query: 558 RDAGLWSATTEANIVD-VRQGYQQA 581
             +       +      VR+   QA
Sbjct: 142 AASANVHFYAQIVKEKSVRRHLIQA 166


>gi|210134462|ref|YP_002300901.1| ATP-dependent protease binding subunit [Helicobacter pylori P12]
 gi|210132430|gb|ACJ07421.1| ATP-dependent protease binding subunit [Helicobacter pylori P12]
          Length = 856

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 92/280 (32%), Gaps = 26/280 (9%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R   K   + L+ + +  +D+              +   ++   +K   N I        
Sbjct: 220 RIVNKEVPKTLLNKRVVALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVI-------L 272

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +              + +  +    K          
Sbjct: 273 FIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYFEKD------MAL 326

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLW---SFLFSDFVEQKYFLPEEIHQR 540
           +      L+N P+ + E  Q L  ++        +    S L +       ++ +     
Sbjct: 327 QRRFQPILLNEPS-INEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPD 385

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL------YKRFRLLSRQ 594
                  E   QL  Q+       ++ + +I  + +  +QAL +      +KR + + ++
Sbjct: 386 KAIDLIDEGAAQLKMQMESEPAKLSSVKRSIQRL-EMEKQALEMEKKESNHKRMQEILKE 444

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             +++++  Q+ A+ E EK   +   +  + +++  ++ +
Sbjct: 445 LSDLKEEKIQLEAQFENEK--EVFKEISRLKMEMESLKKE 482


>gi|158335950|ref|YP_001517124.1| chain length determinant protein [Acaryochloris marina MBIC11017]
 gi|158306191|gb|ABW27808.1| chain length determinant protein, putative [Acaryochloris marina
           MBIC11017]
          Length = 446

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 46/131 (35%), Gaps = 15/131 (11%)

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIV 572
           L++L +      +E +          + ++     + +  L+ Q++        ++ +  
Sbjct: 180 LEQLANGYLKYSLEDRKSRIGGGVAFIEQQLPELRQRVNSLEGQLQTLQQQERISDLDSE 239

Query: 573 ------DVRQGYQQALALYKRFRLLSRQKEEIEKQIA-------QVTAKGEAEKTAILIS 619
                   R+   Q L   +  R   +    ++KQ+          ++  E  +   L++
Sbjct: 240 GVELAKQARELETQRLETQRNLRAQQKLYANLQKQLGLAPNQVIAASSLSEDPRYQELLN 299

Query: 620 ILHEVHIQIHQ 630
            L ++  Q+ Q
Sbjct: 300 QLKQIETQLAQ 310


>gi|119619469|gb|EAW99063.1| dystrophin (muscular dystrophy, Duchenne and Becker types), isoform
            CRA_c [Homo sapiens]
          Length = 3562

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 52/450 (11%), Positives = 127/450 (28%), Gaps = 34/450 (7%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 2406 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 2461

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 2462 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 2521

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2522 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 2580

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 2581 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 2640

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2641 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 2700

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2701 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGL- 2758

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                       L+    E    +  Q   +   L K+   ++ + E++   +     + +
Sbjct: 2759 ---------EKLYQEPRELPPEERAQNVTRL--LRKQAEEVNTEWEKLN--LHSADWQRK 2805

Query: 611  AEKTAILISILHEVHIQIHQIESQEAMIEG 640
             ++T   +  L E   ++     Q  +I+G
Sbjct: 2806 IDETLERLRELQEATDELDLKLRQAEVIKG 2835



 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L +  +K   +     +  K        K  S R   ++L+  +      L E  +   
Sbjct: 1578 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 1637

Query: 491  -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                  I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 1638 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 1697

Query: 546  ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                 ELL++ D   +         E  I                        +   Q  
Sbjct: 1698 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 1757

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1758 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 1809


>gi|118089030|ref|XP_419954.2| PREDICTED: similar to Rho-associated kinase [Gallus gallus]
          Length = 1438

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 104/288 (36%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +    +E +       +E  +        +  ++DQ     Y         +
Sbjct: 872  MSEKQLKQENNHLQEIKLSLEKQNNELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 931

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+ I E                 K  S++L +S   +    L K
Sbjct: 932  ELKEECEEKTKLCKEMQQKIQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 991

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 992  EKIMKELEIKEMMARHKQELAEKDATIASLE---EANRTLTSDVANLANE-----KEELN 1043

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L E    E + +L  +  + G   A  E  +++ R    QA+     +  R   + R 
Sbjct: 1044 NKLKEE--QEQITKLKEEEANIGNIKAQFEKQLLNERTLKTQAVNKLAEIMNRKGPVKRG 1101

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   ++        +I+++++Q A
Sbjct: 1102 ADTDVRRKEKENRKLHMELKSEREKLTQMMIKY---QKEINEMQAQIA 1146



 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 94/300 (31%), Gaps = 29/300 (9%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +     + E+   E++  ++     E   +           +       +  + Q+    
Sbjct: 768  KNKIYESIEEAKSEAMKEMEKKLLEERALKQKVENRLLEAEKQRSMLDCDLKQSQQKINE 827

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              +  +D+L +  +    +        K+     D K  +Q++    + + +L ++ +  
Sbjct: 828  LLRQ-KDKLNEDVKNLTLKIEQ--ETQKRCLTQNDLKMQTQQVNTLKMSEKQLKQENNHL 884

Query: 484  EAALLLTLINHPAI----------LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF- 532
            +   L     +  +          ++E   +L   +Y +   +     L  +  E+    
Sbjct: 885  QEIKLSLEKQNNELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVRELKEECEEKTKLC 944

Query: 533  -LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               ++  Q L +     L  QL+  +  A                  ++ +      + +
Sbjct: 945  KEMQQKIQELQDER-DSLAAQLEITLTKADSEQLARSIAEEQYSDLEKEKIMKELEIKEM 1003

Query: 592  ----SRQKEEIEKQIAQVTAKGE---------AEKTAILISILHEVHIQIHQIESQEAMI 638
                 ++  E +  IA +              A +   L + L E   QI +++ +EA I
Sbjct: 1004 MARHKQELAEKDATIASLEEANRTLTSDVANLANEKEELNNKLKEEQEQITKLKEEEANI 1063


>gi|91773464|ref|YP_566156.1| condensin subunit Smc [Methanococcoides burtonii DSM 6242]
 gi|91712479|gb|ABE52406.1| condensin subunit SMC [Methanococcoides burtonii DSM 6242]
          Length = 1174

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 51/156 (32%), Gaps = 7/156 (4%)

Query: 488 LLTLINHPAILQEQYQELADIRY----DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           L         L +  ++L +          +L  +   +     E   F  E   + +  
Sbjct: 674 LSFAAAEKDKLFKIAEQLTEFESRRNTAIKKLDAVEGHIADINREIHEFEKEISKKEMIF 733

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
              G   ++L + +          E     +R+  +Q      R   +  + +E+E +IA
Sbjct: 734 EEIGGRAERLTQLIEAKNNELEQIEGERAKLREEMEQV---ASRKVDVEGRSKELEAEIA 790

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +  K    +   L      +  ++ +++ +   IE
Sbjct: 791 VLDEKLSDSEVPELNKQADRIDEELRRLDGRIRDIE 826


>gi|54298491|ref|YP_124860.1| effector protein B, substrate of the Dot/Icm secretion system
            [Legionella pneumophila str. Paris]
 gi|53752276|emb|CAH13708.1| effector protein B, substrate of the Dot/Icm secretion system
            [Legionella pneumophila str. Paris]
          Length = 1294

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 89/274 (32%), Gaps = 38/274 (13%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
             +    + I +   L D   +   +     T           K   +  +  + +    +
Sbjct: 871  HQEETIERITKEKSLADSALESLRKEMHELTRKNEENQLKLTKQANSLSEQLEEKQLQIR 930

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ----KGPSQRLMQSSLVKGKLSKKPSL 482
                +LQ+  ++            +     R+Q    K   Q+L +    K K S   S 
Sbjct: 931  EFEKQLQEKEKRVEQSEKEKASAKRTVTSLREQVSNLKLQLQQLGEVIQEKEKGSSLISQ 990

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            +   ++        I+++Q ++L +++    ++Q+L S       + +    E +H +  
Sbjct: 991  QSKQIIAL----QEIIEDQKRQLEELKI---KIQELVSANQELGKQNQSLSKENLHNKNT 1043

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                 + L +L+ Q+      S+  E  I  +R+                         I
Sbjct: 1044 VEDLKKKLTELNVQLEQLHQSSSEKEQTIRKLREEL-----------------------I 1080

Query: 603  AQVTAKGEAEKTAILISILHE----VHIQIHQIE 632
             + ++  + E+  +    L E    +  +I Q +
Sbjct: 1081 KKDSSLKQNEEMQLAQKHLQEEIDRLQKEIKQQQ 1114


>gi|327403531|ref|YP_004344369.1| hypothetical protein Fluta_1538 [Fluviicola taffensis DSM 16823]
 gi|327319039|gb|AEA43531.1| hypothetical protein Fluta_1538 [Fluviicola taffensis DSM 16823]
          Length = 1115

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 58/149 (38%), Gaps = 24/149 (16%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
             +   N E  KL         +Q+  L EE+ + + +    +LL  L++ +        
Sbjct: 563 DKLDASNEEKNKLSEQDEELLKQQE--LIEELLKEVMDDELKKLLDDLEKLMEKNDQQQM 620

Query: 566 TTE-----ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--------- 611
             E     A+  ++++   + + + KR   ++ + +++EK++ Q+ A+ E          
Sbjct: 621 KNETEKLDASSDEMKKQLDRTMEMLKRL-QVNEKIDDLEKELDQLAAEQEKLEKDIKDEK 679

Query: 612 -------EKTAILISILHEVHIQIHQIES 633
                  +K   L     ++   + +++ 
Sbjct: 680 VSEKDASKKQEELNKKFDDLKKDMQEMQK 708


>gi|325116747|emb|CBZ52300.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 3289

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 93/250 (37%), Gaps = 41/250 (16%)

Query: 426  QAIRDRLQQLFQK--YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + I D++QQL +      +  G G    +  R  + K  +Q   Q   ++ + + + + R
Sbjct: 1872 RVISDQVQQLQESEVLYLQMVGEGEAELEREREANAKAVAQIAAQRDALQAQCANEQAAR 1931

Query: 484  EAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSD----------------- 525
            EA L    ++H A L EQ + L     + + E+  L   + +                  
Sbjct: 1932 EAELAEVYVHHRAELDEQRRALERSLLEKDAEIADLRRSVEALEANLKRQQESQDEERRE 1991

Query: 526  -----FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-- 578
                   EQ     E +      R   EL   L R + +           + ++R+G   
Sbjct: 1992 NAQLLRAEQGKREEEAVALARLARENEELQGALQRGLDEREREREEARREVAELREGETK 2051

Query: 579  ----QQALALY-----KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                 Q L +      +R RLL  Q EE E Q+ +  +  E ++      +L E   ++ 
Sbjct: 2052 RRREVQELEMRVAEQTERERLLLTQIEEQEAQLQREQSLLEEQE-----KLLFEQQEELG 2106

Query: 630  QIESQEAMIE 639
            +++ + + +E
Sbjct: 2107 ELQRRNSALE 2116


>gi|87301336|ref|ZP_01084177.1| Chromosome segregation protein SMC [Synechococcus sp. WH 5701]
 gi|87284304|gb|EAQ76257.1| Chromosome segregation protein SMC [Synechococcus sp. WH 5701]
          Length = 1205

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 13/137 (9%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            + ELQ+    L S        L       L   G  EL ++   +V          +  
Sbjct: 353 QHAELQRQRQEL-SADERHAGALAAAEQACLSAEGAVELSRRRLGEVAGRSGTWLEEQKR 411

Query: 571 IVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKG---------EAEKTAILISI 620
               RQ  QQA+A L    + LS +  + E+++ ++ A+          + ++   L++ 
Sbjct: 412 RSQRRQELQQAVAPLLAEQQQLSERLRQAEERLQELEAELASGGSDDQVQQQRLQELLAE 471

Query: 621 LHEVHI--QIHQIESQE 635
              +    +  Q ++QE
Sbjct: 472 AEAMQALVEQQQSQAQE 488



 Score = 37.9 bits (86), Expect = 4.8,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 52/118 (44%), Gaps = 13/118 (11%)

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLP---------EEIHQRLCERGFGELLK--QL 553
           L + +  +   Q+L   +     EQ+             +E+   L   G  + ++  +L
Sbjct: 406 LEEQKRRSQRRQELQQAVAPLLAEQQQLSERLRQAEERLQELEAELASGGSDDQVQQQRL 465

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIAQVTAKGE 610
              + +A    A  E      ++   +ALAL +R R  L +++ ++E++IA++ ++ +
Sbjct: 466 QELLAEAEAMQALVEQQQSQAQE-LAEALALQQRTRTRLEQEQAQLEREIARIESRRD 522


>gi|297675865|ref|XP_002815873.1| PREDICTED: centrosomal protein of 120 kDa-like isoform 2 [Pongo
           abelii]
          Length = 896

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 73/210 (34%), Gaps = 7/210 (3%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL-REA 485
            ++  L  L ++     S      ++    + ++  + + +Q S+ + K      +  E 
Sbjct: 621 KLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDCIHQVELER 680

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             +  L           Q+L D       L+K +         +     +     L    
Sbjct: 681 LKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSEINLLTLEK 737

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE+E+   + 
Sbjct: 738 V-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEELEQMRLRY 794

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQE 635
            A  E +        L ++  +++++  QE
Sbjct: 795 LAAEEKDTVKTERQELLDIRNELNRLRQQE 824


>gi|282897501|ref|ZP_06305502.1| DnaB helicase [Raphidiopsis brookii D9]
 gi|281197596|gb|EFA72491.1| DnaB helicase [Raphidiopsis brookii D9]
          Length = 713

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 44/139 (31%), Gaps = 10/139 (7%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L  +    E A+L  ++  P  +      L    +  N  ++++        + K    
Sbjct: 14  QLPPQNIEAEEAILGGILLDPEAMGRIRDRLLPQAFYVNSHREIYQAAIILNNQNKPTDL 73

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L        +   ++         ++   ++          LA     + L RQ
Sbjct: 74  LSLTEWLTGNDKLNRIGGRNKLATLIDRTVSSVNIDM----------LADLVMDKYLRRQ 123

Query: 595 KEEIEKQIAQVTAKGEAEK 613
             +   +I ++  + + E 
Sbjct: 124 LIKAGNEIVKLGFETQTEL 142


>gi|226292080|gb|EEH47500.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1116

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 70/237 (29%), Gaps = 23/237 (9%)

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y++ I      +    + E         K +        +    +    + + S     
Sbjct: 215 AYTRLISGFFNIILNIKLREMGTKNSKVAKQSLSPAAGRIN-APTKLVAPQKEPSYTSQT 273

Query: 483 REAALLLTLINHPAILQEQYQE-----------LADIRYDNNELQ-KLWSF-LFSDFVEQ 529
            E  L   LI       E               + ++  +N+ L+ KL    L     ++
Sbjct: 274 SEEDLFYMLIRKLKKRDEAEAATTAIKERMEIVIDELTQENDNLRCKLRDVGLICKNQKE 333

Query: 530 KYFLPEEIHQRLCER------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           +      + +R  E+             QL       G      +A   D+ +       
Sbjct: 334 QINARNSLVERWKEKFKTAISSSAATFGQLVEARELNGSLQEKLKAVEKDLARVSVDCER 393

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAK-GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           L  +   L R   ++E +IA +    G        + +  E+ IQ+    +  A++E
Sbjct: 394 LISQEETLQRHIRDLENEIASLRKDGGGKNTQLKDVDMSSELQIQLEATSA--ALME 448


>gi|225849062|ref|YP_002729226.1| DNA double-strand break repair Rad50 ATPase [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643582|gb|ACN98632.1| putative DNA double-strand break repair Rad50 ATPase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 884

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/245 (9%), Positives = 80/245 (32%), Gaps = 23/245 (9%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  +      I   L++   K+           ++  + ++ +    +L        ++ 
Sbjct: 461 EHQKEELINEINKVLEEKRNKHKQLTQKQKEIEEELKKQKEIEQLLNQLKPIYDSIKEVE 520

Query: 478 KKPSLREAALLL--TLINHPAILQEQYQELADIRYDNNE----LQKLWSFLFSDFVEQKY 531
           K+ S  E+ +      I    +L+ Q +++      +++     QK+      +  ++  
Sbjct: 521 KEISTYESKIKAKQHQIKDLDLLKSQKEDIEKFILSHSQDFGYYQKILQENLEEIKQKLI 580

Query: 532 FLPEEIHQRLCERGFG----ELLKQLDRQVRDAGLWSATTEA------NIVDVRQGYQQA 581
                I + +   G      ++ +++              ++       + +     +Q 
Sbjct: 581 EEQNMILKDIESIGLKVEPLQIKQEISEASNKIQQLKPFNDSYNQILPKLKEEDSLERQL 640

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVT-------AKGEAEKTAILISILHEVHIQIHQIESQ 634
                    L  Q  +IE+++  +         +    +       + E + Q+  ++ Q
Sbjct: 641 QESENTKTQLENQLNDIEEKLKDLDIEKFKEEKEKIKAQIEEKNKEISEKNQQLGHLKGQ 700

Query: 635 EAMIE 639
           ++++E
Sbjct: 701 KSILE 705


>gi|119619470|gb|EAW99064.1| dystrophin (muscular dystrophy, Duchenne and Becker types), isoform
            CRA_d [Homo sapiens]
          Length = 2256

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 52/450 (11%), Positives = 127/450 (28%), Gaps = 34/450 (7%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +  N          ++L N    LN + K   +
Sbjct: 1103 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 1158

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 1159 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 1218

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 1219 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 1277

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 1278 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 1337

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 1338 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 1397

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 1398 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGL- 1455

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                       L+    E    +  Q   +   L K+   ++ + E++   +     + +
Sbjct: 1456 ---------EKLYQEPRELPPEERAQNVTRL--LRKQAEEVNTEWEKLN--LHSADWQRK 1502

Query: 611  AEKTAILISILHEVHIQIHQIESQEAMIEG 640
             ++T   +  L E   ++     Q  +I+G
Sbjct: 1503 IDETLERLRELQEATDELDLKLRQAEVIKG 1532



 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            L +  +K   +     +  K        K  S R   ++L+  +      L E  +   
Sbjct: 275 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 334

Query: 491 -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                 I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 335 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 394

Query: 546 ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                ELL++ D   +         E  I                        +   Q  
Sbjct: 395 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 454

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 455 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 506


>gi|27503680|gb|AAH42459.1| Cgn protein [Mus musculus]
          Length = 1230

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 64/169 (37%), Gaps = 9/169 (5%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKY 531
           K ++ ++  LRE  L          +    QE+  +R     + ++L   +     +   
Sbjct: 510 KQRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAA 569

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              E   ++       EL ++L+    + G W +  + N  ++R   Q+ L L      +
Sbjct: 570 LEAE---RQKMSSLVRELQRELEETSEETGHWQSMFQKNKEELRATKQELLQLRMEKEEM 626

Query: 592 SRQKEE----IEKQIAQVTAK-GEAEKTAILISILHEVHIQIHQIESQE 635
             +  E    +++ + Q  A   +  +   L   L     ++ ++++++
Sbjct: 627 EEELGEKMEVLQRDLEQARASTRDTHQVEELKKELRRTQGELKELQAEQ 675



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 99/291 (34%), Gaps = 25/291 (8%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y + A +++        D   + E  +   +   +  +            +D  
Sbjct: 900  QAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTA 959

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                  + +  RLQ L Q+   +        ++     ++    +  +       +L   
Sbjct: 960  RLD--KELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTD 1017

Query: 480  PSLREA----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDF 526
               R       L   L+   +  Q+   +   +   N +L+ +L S           S  
Sbjct: 1018 RVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQL 1077

Query: 527  VEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
              Q   L E +     E+       ++L+R+V++  +       ++ D +        L 
Sbjct: 1078 ESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQ------LT 1131

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
             R + L RQ +E E++I ++ +  +       +   HEV+ Q+  +I+S E
Sbjct: 1132 LRVKALKRQVDEAEEEIERLDSLRKKA--QRELEEQHEVNEQLQARIKSLE 1180


>gi|74188498|dbj|BAE28009.1| unnamed protein product [Mus musculus]
          Length = 1722

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 37/349 (10%), Positives = 90/349 (25%), Gaps = 31/349 (8%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   +  +  D   F +      
Sbjct: 1144 RRFDSELSQAHEETQREKLQREKLQREKDMLLAEAFSLKQQMEEKDLDIAGFTQKVVSLE 1203

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1204 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGSIQMLEQAKLRLEMEME 1263

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K  ++    E+ L   
Sbjct: 1264 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKALREKRELESKLSTL 1322

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1323 SDQVNQRDFESEKRLRKDLRRTKALLADAQIMLDHLKNNAPSKREIAQLKNQLEESEFT- 1381

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1382 ----CAAAVKARKAMEVEMEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1437

Query: 609  GE-----------------------AEKTAILISILHEVHIQIHQIESQ 634
                                       +         E+  ++  ++SQ
Sbjct: 1438 MNELMKKHKAAVAQASRDMAQMNDLQAQIEESNKEKQELQEKLQALQSQ 1486



 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1462 LQAQIEESNKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFEK 1518

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1519 TQVKRLENLASRLKETMEKLTEERDQRAAAENREKEQNKRLQRQLRDTKEEMSELARKEA 1578


>gi|311031913|ref|ZP_07710003.1| hypothetical protein Bm3-1_15502 [Bacillus sp. m3-13]
          Length = 447

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 82/217 (37%), Gaps = 20/217 (9%)

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
           L +K             K+ +  ++   +++  + + ++ +  +  +  E  L   +   
Sbjct: 24  LSEKAFANEMQQKLNEVKDQQSSNESTRTEKQTEVNQLQAEQQEIRAEVER-LDKAVAET 82

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR-------------L 541
              +  + +E+   R D  +L+K    L     ++   L +                  L
Sbjct: 83  KNKISGKKEEIDTTRKDIEKLKKEIEVLKERIAKRNELLEDRARSFQQGGGAVNYLDVLL 142

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             + FG+ L ++              +A+  D+++   + L + ++   L +Q  ++E  
Sbjct: 143 GAQSFGDFLDRVGAVATIVQADRDILQAHQNDMKELEAKELEMREQLASLEQQLVDLENM 202

Query: 602 IAQVTAKGEAEKTAILISILHEVHI----QIHQIESQ 634
             +V  KG+  +   L++ L +       +IH++E++
Sbjct: 203 --EVQLKGQIAEKDKLLAELKKKEKETMHEIHELENE 237


>gi|284164623|ref|YP_003402902.1| chromosome segregation protein SMC [Haloterrigena turkmenica DSM
           5511]
 gi|284014278|gb|ADB60229.1| chromosome segregation protein SMC [Haloterrigena turkmenica DSM
           5511]
          Length = 1196

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 12/158 (7%)

Query: 489 LTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGF 546
              +N  A+ L +    LA           +     ++ +        EI   +     F
Sbjct: 131 YYYLNDRAVNLSDIQDLLAQAGVTPEGYNVVMQGDVTEIINMTPHARREIIDEIAGVAEF 190

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK---RFRLLSRQKEEIE--KQ 601
               +    ++          E  I + R    Q     +   R+R L R+KEE E  K+
Sbjct: 191 DAKKEDAFEELEVVEERIDEAELRIEEKRDRLDQLADERRQAMRYRRLRREKEEYEGYKK 250

Query: 602 IAQVTAKGEA-----EKTAILISILHEVHIQIHQIESQ 634
            +++  K +      E  A L   L ++  ++ + +  
Sbjct: 251 ASELEEKRDELADAEETAAELEGELEDLQRELDERQGT 288



 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 79/252 (31%), Gaps = 20/252 (7%)

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
           +RE  +      +  A+ E   +      +         +  RDRL QL  +        
Sbjct: 177 RREIIDEIAGVAEFDAKKEDAFEELEVVEERIDEAELRIEEKRDRLDQLADERRQAMRYR 236

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
               +K      +K       +  L   + +      E            + +E  +   
Sbjct: 237 RLRREKEEYEGYKKASELEEKRDELADAEETAAELEGELE---------DLQRELDERQG 287

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            +     +L+ L + +     +++  +  EI          E+  ++ R         A 
Sbjct: 288 TVVRLQEDLEDLNAEIERKGEDEQLRIKSEI---------EEIKGEISRFEDKIEASEAA 338

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEE--IEKQIAQVTAKGEAEKTAILISILHEV 624
            E    + R+ + +     ++   L  +  E  +EK   +   +  A +   L + +  V
Sbjct: 339 IEEAESNRREAFVEIDRKQEQIDDLESEMREHKLEKASLKSEIQERAAERDELEAEIEAV 398

Query: 625 HIQIHQIESQEA 636
             +  +++++ A
Sbjct: 399 DTEFDELKAELA 410


>gi|301092107|ref|XP_002896226.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262094856|gb|EEY52908.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 542

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 46/141 (32%), Gaps = 20/141 (14%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
              +     E+   L   ++ ++ E         L      A    A   A     R+  
Sbjct: 373 HKRVVEAEKERYEMLETALNNQIHELESRTAQDTLAHAAELARAIEAKHRAEQRADRRIQ 432

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE------KTAILISILHE--------- 623
            +   + +    +  Q+ E+   +A+  A+ + E      ++  L +   E         
Sbjct: 433 DEVDRIAREREAVDEQRRELLVSMARTNARFDEERGKMEARSCELDARRRELAGERAELE 492

Query: 624 -----VHIQIHQIESQEAMIE 639
                +  +I ++E  EA++E
Sbjct: 493 ARIGYIEQRIRRLEEDEALVE 513


>gi|171689966|ref|XP_001909922.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944945|emb|CAP71056.1| unnamed protein product [Podospora anserina S mat+]
          Length = 2731

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 99/302 (32%), Gaps = 23/302 (7%)

Query: 362  FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-QKL 420
              +     A   + + +          + E     T           +     I D ++ 
Sbjct: 1927 HSQVKATAAELAIFIAAQTQRIADEHEDKEKTLQETIVALERRLEEKQQVEAQISDLREE 1986

Query: 421  RYYYSQAIRDRLQQLFQKY-ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    Q I   L Q  ++  I   S       +           Q L++ + +     ++
Sbjct: 1987 QERLKQYISVTLPQEQEQITIAFMSNLQSEEARLKETITSLKEEQELLKETFLSNLKEEQ 2046

Query: 480  PSLREAALLLTLINH---PAILQEQYQELADIRYDNNELQ----KLWSFLFSDFVEQKYF 532
              + EA + L         + +    +E A I   N  L+    KL     ++  E++  
Sbjct: 2047 TRITEANVALNAEQDQLKESFIANLKEEQARIMETNVALKEEQDKLKETFLANLREEEGR 2106

Query: 533  LPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDVRQGY-----QQALAL 584
            L E ++  L E         L  L  +       +A   A+   +R+ +     ++ L L
Sbjct: 2107 LKE-LNDALREEQQNIRDTYLANLREEESLLKEINAGLRADQEALRESFIKSFQEEELRL 2165

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIH-QIES-QEAMIE 639
             +    L    ++++  + +     +    E+     + L E H Q+  Q+++ QEA+  
Sbjct: 2166 REVNEQLRADNDKLQVTLKEENDLLKAALKEEYEQAKAQLKEEHEQLKAQLKAEQEALKA 2225

Query: 640  GF 641
             F
Sbjct: 2226 TF 2227



 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/306 (11%), Positives = 76/306 (24%), Gaps = 18/306 (5%)

Query: 328  LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
                   ++      +       V  +   D  +F R          +  +   + +   
Sbjct: 1884 QERVEIPVEKYNDTAVNEKLDVLVGHTEVAD-KAFGRLDTLDEVHSQVKATAAELAIFIA 1942

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
             +T+  +    D+   L+  +      +++++        +R+           E     
Sbjct: 1943 AQTQRIADEHEDKEKTLQETIVALERRLEEKQQVEAQISDLREE---------QERLKQY 1993

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                               +QS   + K +      E  LL         L    +E   
Sbjct: 1994 ISVTLPQEQEQITIAFMSNLQSEEARLKETITSLKEEQELLK-----ETFLSNLKEEQTR 2048

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ---RLCERGFGELLKQLDRQVRDAGLWS 564
            I   N  L      L   F+         I +    L E         L     + G   
Sbjct: 2049 ITEANVALNAEQDQLKESFIANLKEEQARIMETNVALKEEQDKLKETFLANLREEEGRLK 2108

Query: 565  ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
               +A   + +      LA  +    L ++     +   +   +   +        L EV
Sbjct: 2109 ELNDALREEQQNIRDTYLANLREEESLLKEINAGLRADQEALRESFIKSFQEEELRLREV 2168

Query: 625  HIQIHQ 630
            + Q+  
Sbjct: 2169 NEQLRA 2174



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 88/272 (32%), Gaps = 18/272 (6%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ--KLRYYY 424
              +   +        + +   +E E  +          E  LK  I  +K++   L+  +
Sbjct: 1979 QISDLREEQERLKQYISVTLPQEQEQITIAFMSNLQSEEARLKETITSLKEEQELLKETF 2038

Query: 425  SQAIRD---RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM-QSSLVKGKLSKKP 480
               +++   R+ +       E       +  N +    +     +  +    K K +   
Sbjct: 2039 LSNLKEEQTRITEANVALNAEQDQLKESFIANLKEEQARIMETNVALKEEQDKLKETFLA 2098

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +LRE      L      L+E+ Q + D    N  E + L   + +     +  L E   +
Sbjct: 2099 NLREEE--GRLKELNDALREEQQNIRDTYLANLREEESLLKEINAGLRADQEALRESFIK 2156

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               E      L++++ Q+R        T     D+ +      AL + +     Q +E  
Sbjct: 2157 SFQEEELR--LREVNEQLRADNDKLQVTLKEENDLLKA-----ALKEEYEQAKAQLKEEH 2209

Query: 600  KQIAQVTAKGEAEKTAILI-SILHEVHIQIHQ 630
            +Q+     K E E       +   E+   + +
Sbjct: 2210 EQLK-AQLKAEQEALKATFKAEQEELRASMKE 2240


>gi|114669125|ref|XP_001166314.1| PREDICTED: myosin, heavy polypeptide 10, non-muscle isoform 2 [Pan
           troglodytes]
          Length = 1749

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 649 EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 708

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 709 ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 768

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
             ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 769 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 822

Query: 538 HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            Q L +             + + +L  Q+ +  L  A  E    +++    +        
Sbjct: 823 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKE---EELQGALARGDDETLHK 879

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
               +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 880 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 927



 Score = 37.2 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L    +     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1164 EEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQ 1223

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1224 KKFDQLLAEEKSISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1278

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1279 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1338

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1339 EVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEID 1398

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1399 LKDLEAQIEA 1408


>gi|50950115|dbj|BAD34967.1| junction-associated coiled-coil protein [Mus musculus]
          Length = 1298

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 83/252 (32%), Gaps = 19/252 (7%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           D++ +L + +      ++ +       +  R+R+++  ++    H           R  +
Sbjct: 611 DQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLE 670

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +     R     L + K+ ++    E   L        + +   +  +  R ++ E   L
Sbjct: 671 ESEGELRKSLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSTKRSEDREKGAL 725

Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
              L     + +  L  +  Q    R  ER    L   L  +V          +      
Sbjct: 726 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 785

Query: 575 RQGYQQALALYKRFRLL------SRQKEEIEKQIAQVTAKGEAEKTA----ILISILHEV 624
            Q +++++    +   +      S ++ + E  + +   K E EK       L     ++
Sbjct: 786 LQAFRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQL 845

Query: 625 HIQIHQIESQEA 636
             Q+  ++  EA
Sbjct: 846 QRQMEDVKGDEA 857



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 81/229 (35%), Gaps = 19/229 (8%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + ++D+L ++  +  +      R  +K A   +     Q L    + K +       RE
Sbjct: 697 IRDLQDQLSEMHDELDSTKRSEDR--EKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRE 754

Query: 485 AALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVE-----------QKYF 532
             L          +    QE+  ++   + ELQ     +                 ++  
Sbjct: 755 RELTALKGALKEEVSSHDQEMDKLKEQYDAELQAFRESVEEATKNVEVLASRSNSSEQSQ 814

Query: 533 LPEEIHQRLCERGFGEL---LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              ++ +++ +    +L   + +L+R+           + +    ++  ++  +  ++  
Sbjct: 815 AEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLE 874

Query: 590 --LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             L+  +KEE E   A+   + E E+    +S + +   ++ +    EA
Sbjct: 875 EALVHARKEEKEATCARRALEKELEQAQRELSQVSQEQKELLEKLRDEA 923



 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 101/326 (30%), Gaps = 20/326 (6%)

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA----FEKLIV 376
            +G+          + +         R     LS   D     +           E+L+ 
Sbjct: 672 SEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQ 731

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ---KLRYYYSQAIRDRLQ 433
               L D+L  +E +       +                 DQ   KL+  Y   ++   +
Sbjct: 732 AKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQAFRE 791

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
            + +          R         +     + L + +        +   R A L   +  
Sbjct: 792 SVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQM-- 849

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
              +  ++ Q    +R   +E+Q+L   L     E+K        +R  E+   +  ++L
Sbjct: 850 -EDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCA---RRALEKELEQAQREL 905

Query: 554 DR--QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ---IAQVTAK 608
            +  Q +   L     EA   +  +  +  +   +    L +  ++++K+   IA+ +  
Sbjct: 906 SQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERW--HLDKTIQKLQKEMADIAEASRT 963

Query: 609 GEAEKTAILISILHEVHIQIHQIESQ 634
              E    L     +   ++ ++++Q
Sbjct: 964 SSLELQKQLGEYKEKNRRELAEMQTQ 989


>gi|297622426|ref|YP_003703860.1| ATP-dependent chaperone ClpB [Truepera radiovictrix DSM 17093]
 gi|297163606|gb|ADI13317.1| ATP-dependent chaperone ClpB [Truepera radiovictrix DSM 17093]
          Length = 862

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 11/149 (7%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           I   A L+ ++Q +        +   +   +   +                +        
Sbjct: 320 IEKDAALERRFQPIVVDEPSVEDTISILRGIKEKYEVHHGVEIA-------DSALVAAAT 372

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
              R + D  L     +       +   Q  +L +    LSR+K ++E +   +  + +A
Sbjct: 373 LSHRYIADRQLPDKAIDLIDEAASRLRVQLDSLPEEIDALSRRKLQLEIEQQALKREQDA 432

Query: 612 EKTAILIS---ILHEVHIQIHQIESQ-EA 636
           E    L+     L  +  QIHQ  S+ EA
Sbjct: 433 ESANRLLRIEEELRAIEDQIHQARSEWEA 461


>gi|291280297|ref|YP_003497132.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Deferribacter
           desulfuricans SSM1]
 gi|290754999|dbj|BAI81376.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Deferribacter
           desulfuricans SSM1]
          Length = 867

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/144 (9%), Positives = 43/144 (29%), Gaps = 16/144 (11%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    K+   + S   E      +     +  +   +   +  +          +
Sbjct: 391 AIDLIDEAAAKIRMEIDSLPTELDELERKLRQLEIERQALKKEKDEASKSRLVKLEEEIS 450

Query: 567 T-EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE------------- 612
             +  I +++  +Q    L    R +  + E+ + ++ +   +G  E             
Sbjct: 451 NLQEKINELKTHWQNEKNLIMESRKIKEEIEQAKIEMQKAEREGNLELASQIKYGKLIEL 510

Query: 613 --KTAILISILHEVHIQIHQIESQ 634
             K   + + L E+      ++ +
Sbjct: 511 QQKLEEVNNKLKEIQKNKKMLKEE 534


>gi|288905061|ref|YP_003430283.1| ABC transporter ATP-binding protein [Streptococcus gallolyticus
           UCN34]
 gi|288731787|emb|CBI13352.1| putative ABC transporter, ATP-binding protein [Streptococcus
           gallolyticus UCN34]
          Length = 639

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 18/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +     +       +    L +
Sbjct: 472 NHLDIDSKEVLEDALIDFDGTLLFVSHDRYFINRVATKVLEISEKGSTLYLGDYDYYLEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E +++L  +       +   +A   D    YQ   A  K  R L+R+  EIE Q+ 
Sbjct: 532 KAELEEMERLKAEEAQEKTVAIVEKAPAND----YQAQKANQKELRKLTRRIAEIENQLE 587

Query: 604 QVTAKGEAEKTAILIS----ILHEVHIQIHQI-ESQEAMI 638
            + A+ EA   A+L +     L ++  ++  + E QE ++
Sbjct: 588 DIEAREEAINQAMLATNDAVELVDLQKELDDLTEQQEKLM 627


>gi|240279298|gb|EER42803.1| anucleate primary sterigmata protein B [Ajellomyces capsulatus H143]
          Length = 1704

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 70/225 (31%), Gaps = 25/225 (11%)

Query: 429  RDRLQQLFQKYI-TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            ++RL Q  +     +  G G          ++     +   +S     +  + S  E   
Sbjct: 917  KERLYQEIEDLKLGQRRGDGGRSVAGDSIFERSVSRAQDRSNSHASDGVRSRASDAERES 976

Query: 488  LLTLINHPAILQEQYQELADIRYDNNELQKLWS-------FLFSDFVEQKYFLPEEIHQR 540
            L   I +  +       ++ ++ +N  L+            L   +        E++   
Sbjct: 977  LE--IKNGELR----DHVSALKLENQSLRTQLDECMSDLVALDRAYQADVEQAEEDLQTM 1030

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEAN---------IVDVRQGYQQALALYKRFRLL 591
              ER     + +   +        A  E +         I + ++   +    ++  + L
Sbjct: 1031 QLERDHALQIAEEREEALQDLKAEAQEELDAMGDELDQKIDECQRMEAELANQHENLKAL 1090

Query: 592  SRQKEEIEKQIAQVT--AKGEAEKTAILISILHEVHIQIHQIESQ 634
              +     + I ++   A+   +K   +   L + + ++ Q+E  
Sbjct: 1091 QAEMRSASEGIIRLEEDAQSNLQKYKAVQQELDDANRELEQMEKS 1135


>gi|219849743|ref|YP_002464176.1| hypothetical protein Cagg_2879 [Chloroflexus aggregans DSM 9485]
 gi|254790911|sp|B8G607|RF2_CHLAD RecName: Full=Peptide chain release factor 2; Short=RF-2
 gi|219544002|gb|ACL25740.1| hypothetical protein Cagg_2879 [Chloroflexus aggregans DSM 9485]
          Length = 367

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 8/126 (6%)

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
           L +L   L +            +   L        ++QL+ +  D  LW+    A   ++
Sbjct: 2   LAELHEELETIRER-----FANLRGHLDLAAKQAEIEQLEVRASDPELWNTPRVA--QEL 54

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            Q   +       +  L  +   + + I     +G+    A L + L  V  ++ Q E  
Sbjct: 55  MQRLTRLKEEVALWNDLDHRMTSLAELIELAEQEGDESLAADLAAELRAVQREVAQRE-L 113

Query: 635 EAMIEG 640
           E ++ G
Sbjct: 114 EILLSG 119


>gi|162416267|sp|Q6AW69|CGNL1_MOUSE RecName: Full=Cingulin-like protein 1; AltName:
           Full=Junction-associated coiled-coil protein
          Length = 1298

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 83/252 (32%), Gaps = 19/252 (7%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           D++ +L + +      ++ +       +  R+R+++  ++    H           R  +
Sbjct: 611 DQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLE 670

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +     R     L + K+ ++    E   L        + +   +  +  R ++ E   L
Sbjct: 671 ESEGELRKSLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSTKRSEDREKGAL 725

Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
              L     + +  L  +  Q    R  ER    L   L  +V          +      
Sbjct: 726 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 785

Query: 575 RQGYQQALALYKRFRLL------SRQKEEIEKQIAQVTAKGEAEKTA----ILISILHEV 624
            Q +++++    +   +      S ++ + E  + +   K E EK       L     ++
Sbjct: 786 LQAFRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQL 845

Query: 625 HIQIHQIESQEA 636
             Q+  ++  EA
Sbjct: 846 QRQMEDVKGDEA 857



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 81/229 (35%), Gaps = 19/229 (8%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + ++D+L ++  +  +      R  +K A   +     Q L    + K +       RE
Sbjct: 697 IRDLQDQLSEMHDELDSTKRSEDR--EKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRE 754

Query: 485 AALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVE-----------QKYF 532
             L          +    QE+  ++   + ELQ     +                 ++  
Sbjct: 755 RELTALKGALKEEVSSHDQEMDKLKEQYDAELQAFRESVEEATKNVEVLASRSNSSEQSQ 814

Query: 533 LPEEIHQRLCERGFGEL---LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              ++ +++ +    +L   + +L+R+           + +    ++  ++  +  ++  
Sbjct: 815 AEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLE 874

Query: 590 --LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             L+  +KEE E   A+   + E E+    +S + +   ++ +    EA
Sbjct: 875 EALVHARKEEKEATCARRALEKELEQAQRELSQVSQEQKELLEKLRDEA 923



 Score = 37.6 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 101/326 (30%), Gaps = 20/326 (6%)

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA----FEKLIV 376
            +G+          + +         R     LS   D     +           E+L+ 
Sbjct: 672 SEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQ 731

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ---KLRYYYSQAIRDRLQ 433
               L D+L  +E +       +                 DQ   KL+  Y   ++   +
Sbjct: 732 AKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQAFRE 791

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
            + +          R         +     + L + +        +   R A L   +  
Sbjct: 792 SVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQM-- 849

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
              +  ++ Q    +R   +E+Q+L   L     E+K        +R  E+   +  ++L
Sbjct: 850 -EDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCA---RRALEKELEQAQREL 905

Query: 554 DR--QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ---IAQVTAK 608
            +  Q +   L     EA   +  +  +  +   +    L +  ++++K+   IA+ +  
Sbjct: 906 SQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERW--HLDKTIQKLQKEMADIAEASRT 963

Query: 609 GEAEKTAILISILHEVHIQIHQIESQ 634
              E    L     +   ++ ++++Q
Sbjct: 964 SSLELQKQLGEYKEKNRRELAEMQTQ 989


>gi|26553658|ref|NP_757592.1| replicative DNA helicase [Mycoplasma penetrans HF-2]
 gi|26453664|dbj|BAC43996.1| replicative DNA helicase [Mycoplasma penetrans HF-2]
          Length = 477

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 54/164 (32%), Gaps = 13/164 (7%)

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE------ 543
            ++N+ A + E +  L+   +   E + ++          +      I   +        
Sbjct: 27  CVLNNDADIDEIFLHLSPKDFIKPENRIIFKIAIDFRENNEPIDFIAIADYISNDSDLSI 86

Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-----SRQKE 596
             +     L  L      +       E       +    + A   +   L     + +  
Sbjct: 87  HFKDHKRYLLDLSSSHTYSKNLEQYIEIIKNSSIKRSINSFAEELKNTDLDLINANEKLW 146

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           E+EK+ + +    + ++ + +  I+ E H ++  I+ Q   I+G
Sbjct: 147 ELEKEFSNIAGSKKGKQISSIQEIIEEFHKKLELIKEQSDDIQG 190


>gi|88854478|ref|ZP_01129145.1| replicative DNA helicase [marine actinobacterium PHSC20C1]
 gi|88816286|gb|EAR26141.1| replicative DNA helicase [marine actinobacterium PHSC20C1]
          Length = 462

 Score = 42.2 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 5/78 (6%), Positives = 29/78 (37%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           + S    ++     L E + +  ++     + +  + +  + +   + + +++ + + + 
Sbjct: 19  RGSSRGDRVPPHDLLAEQSAIGGMLLSKDAVADVIETVRGVDFYVPKHETIFNAVLTLYS 78

Query: 528 EQKYFLPEEIHQRLCERG 545
             +      +   L + G
Sbjct: 79  HGEPTDVIAVTDELTKTG 96


>gi|324501074|gb|ADY40484.1| Tag-278 [Ascaris suum]
          Length = 1128

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 94/293 (32%), Gaps = 41/293 (13%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +   A  + + +        ++   +       +    ++      +N +        
Sbjct: 440 QVHALEAVLESVTKEKESTKEHYEGLLDKERQQAEEREYAMKKEFSAKLNEL------EE 493

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-----GPSQRLMQSSLVKGKLSK 478
              A++++L+Q  Q+   E  G       + R ++          +  +   + +G    
Sbjct: 494 QYNALKEQLEQNAQRDKEELQGKTEQQISSLRSQNSILIVELNALKSKLNDRIDEGDDLP 553

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADI--------RYDNNELQKLWSFLFSDFVEQK 530
           K   +   L   L      + E+  E+ ++          ++++L  +   + ++ V   
Sbjct: 554 KLIDKMEELKADLEKSKERILEKEDEIKELKKQIEQENELNDDQLAVIRDEIRTELVNSG 613

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            F   +           +  K+L  +V        T +     + +  +Q   L      
Sbjct: 614 EFGCND-----------DEFKRLKEKVSVLEEEKRTEQTEREKLFELVKQ---LQTDNEH 659

Query: 591 LSRQKEEIEKQIA-QVTAKGEAE-------KTAILISILHEVHIQIHQIESQE 635
           L+ Q +E   +   +  A  + E       K   L++ L E   +I Q+E  +
Sbjct: 660 LNEQVKEFNDKTNSEANASEDDESNTSYNLKIERLMNDLREREKRIDQMEETQ 712



 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 85/273 (31%), Gaps = 19/273 (6%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                    +E+     +       +R  E       +  +++    +  +   KD + R
Sbjct: 120 QTLEDTVAEYERQKYNVMGTFSEYRERVAERERKLEAEYSSKIIALSEEVLGAKKDFEAR 179

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               QA++D+ ++  ++ + +     +   +    R  +     L Q  +++ +  ++  
Sbjct: 180 MKSFQALQDKFEREKEQALEKLRQEHQKEIQLLEQRFSESQLLNLEQKYMIEIQRLEEER 239

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                         ++  E+ +            Q L+    +          E +    
Sbjct: 240 K-------------SLKAEKERLGETFEMKLRRAQSLYETELTAAKMLYSKELEALRDH- 285

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            E    ELL + D            ++ +  ++     +  AL KR +    +   I K+
Sbjct: 286 EEALKDELLARQDEFHDRLQELQHQSKRSREELATCKNEVTALEKRLQAKEAELLAISKE 345

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           + +   +         +  L +V  ++ Q + Q
Sbjct: 346 LEEARNETNDS-----LRKLSKVESELQQTKQQ 373


>gi|325290419|ref|YP_004266600.1| chromosome segregation protein SMC [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965820|gb|ADY56599.1| chromosome segregation protein SMC [Syntrophobotulus glycolicus DSM
           8271]
          Length = 1198

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 78/220 (35%), Gaps = 10/220 (4%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-VKGKLSKKP 480
                   D  + L ++         R  +   +  D +   +RL    + ++G+L    
Sbjct: 155 DEILNLKSDERRLLIEEVAGISKYRMRKKEALKKLEDTQKNLERLNDIIVEIEGRLEPLK 214

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E A L   +N     +    E++ +  +  +++     +     E+       +  +
Sbjct: 215 EQAETARLSKELNQ----ELAQTEISVLVCELEQVKNRLQEILD-GAEEMQEKKALVLAK 269

Query: 541 LCERGFGELLKQ--LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           + E     L+K+  L++  +                ++   Q   L +R   +S QK+ +
Sbjct: 270 IAEHESIHLVKEHDLEKLKQTIQQRQEEIRELENAAQEETHQISILTERQGFISEQKDRL 329

Query: 599 EKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEA 636
           EK++    A+ E   ++T  L     E+   + +++   A
Sbjct: 330 EKEMIADKAEKELCKDRTGELAGRKRELTRSLEEMKDSLA 369


>gi|299470554|emb|CBN78542.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 886

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 73/262 (27%), Gaps = 57/262 (21%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKN-ARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           + ++D+L    ++   E +      K++  R + ++  +QRLM     + +  +    RE
Sbjct: 349 KRLQDQLALDSRRARAESANLASQLKQSEHRVKAKEAAAQRLMDKLQEEAEKERLSQQRE 408

Query: 485 AALLLTL------------------INHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
            A+L                      N   + +              E+ KL + +    
Sbjct: 409 RAILTKFRQKEAAAVVAVRGSGGGGANDSRVAESLIAHSKAQERSEAEMDKLRAEISRLG 468

Query: 527 VEQKYFLPEEIHQRL---------------CERGFGELLKQLDRQVRDAGLWSATTEANI 571
            E +      +  RL                     EL  +L    R   +        +
Sbjct: 469 DELREKENTILKHRLGPDWTPDLDPKVAPASSDELRELRDRLVESERSVRVMKQRETRAL 528

Query: 572 VDVRQGYQQALA-----------------------LYKRFRLLSRQKEEIEKQIAQVTAK 608
                  ++                            + +R   R+ +++E ++ Q T++
Sbjct: 529 ERCASMEKECAEVQAKADETQDALVNARLELSSRPSLRNWRASQRRIQDLETRLGQATSQ 588

Query: 609 GEAEKTAILISILHEVHIQIHQ 630
            +       +    +    + +
Sbjct: 589 AKEAMDVAELRRWVDTRELMRR 610


>gi|254415827|ref|ZP_05029584.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177254|gb|EDX72261.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1218

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           ELL+QL  QV      S+  E    ++ Q  +  L L +  + L R+ EE   Q+ Q   
Sbjct: 537 ELLQQLAVQVGIGIQQSSLFEQVQTELIQRKRVELELQQAKQELERRVEERTAQLQQSN- 595

Query: 608 KGEAEKTAILISILHEVHIQIHQ-IESQEAMIEG 640
               +K    I+   +V IQ+ Q + + EA  EG
Sbjct: 596 ----QKLQHEIAERQQVEIQLRQKLAAIEATTEG 625


>gi|154497782|ref|ZP_02036160.1| hypothetical protein BACCAP_01760 [Bacteroides capillosus ATCC
          29799]
 gi|150273280|gb|EDN00425.1| hypothetical protein BACCAP_01760 [Bacteroides capillosus ATCC
          29799]
          Length = 303

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 70 KGDHLSFLSALLGCSFIESVQRL 92
           GD ++FL      SF E+V+ L
Sbjct: 51 GGDAITFLQRFCSKSFPEAVEYL 73


>gi|153954515|ref|YP_001395280.1| replicative DNA helicase [Clostridium kluyveri DSM 555]
 gi|153954607|ref|YP_001395372.1| replicative DNA helicase [Clostridium kluyveri DSM 555]
 gi|153955904|ref|YP_001396669.1| DNA helicase [Clostridium kluyveri DSM 555]
 gi|219855095|ref|YP_002472217.1| hypothetical protein CKR_1752 [Clostridium kluyveri NBRC 12016]
 gi|219856254|ref|YP_002473376.1| hypothetical protein CKR_2911 [Clostridium kluyveri NBRC 12016]
 gi|146347465|gb|EDK34001.1| Predicted replicative DNA helicase [Clostridium kluyveri DSM 555]
 gi|146348762|gb|EDK35298.1| Predicted DNA helicase [Clostridium kluyveri DSM 555]
 gi|152206118|gb|ABS30682.1| Predicted replicative DNA helicase [Clostridium kluyveri DSM 555]
 gi|219568819|dbj|BAH06803.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
 gi|219569978|dbj|BAH07962.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 447

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/140 (10%), Positives = 49/140 (35%), Gaps = 11/140 (7%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  ++ T++N+   +    + +    +     + ++  L +   +        + ++L 
Sbjct: 13  AERGVIGTILNNNQAMDIALELITPEDFYRENHKVIFKALVNLHEKNAAMDLLTVSEQLK 72

Query: 543 ERGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ------ 594
           + G  E+  +  L + +      S   E  ++   +  ++ +       +L         
Sbjct: 73  D-GLKEIGGITYLSQLMGAYTPTSNVKEYALIVKDKSNKRKIIKIANEMMLDACNNSSVD 131

Query: 595 --KEEIEKQIAQVTAKGEAE 612
               + E +I  + +  ++E
Sbjct: 132 DILNKAESKILDINSYKDSE 151


>gi|24380468|ref|NP_722423.1| replicative DNA helicase [Streptococcus mutans UA159]
 gi|24378497|gb|AAN59729.1|AE015034_10 putative replicative DNA helicase (DNA polymerase III delta prime
           subunit) [Streptococcus mutans UA159]
          Length = 454

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/162 (10%), Positives = 50/162 (30%), Gaps = 7/162 (4%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
               + ++  +  + E ++L ++   P  L    + +    +     + ++  + S   +
Sbjct: 2   PETSELRVQPQDLIAEQSVLGSVFISPEKLIAVREYIDPEDFYKYAHRVIFKAMISLSDQ 61

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                   +   L  +G       L      + L             + Y + +A     
Sbjct: 62  NDAIDATTVRAILDNQG------DLQNIGGISYLVELVNSVPTSANAEYYAKIVAEKAML 115

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           R +  +  E   Q  +  A    +  +     L +V+ + ++
Sbjct: 116 RRIISRLTEAVNQAYE-GAINSEDIISGAEKALIDVNERSNR 156


>gi|17232403|ref|NP_488951.1| hypothetical protein alr4911 [Nostoc sp. PCC 7120]
 gi|17134049|dbj|BAB76610.1| alr4911 [Nostoc sp. PCC 7120]
          Length = 690

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 86/274 (31%), Gaps = 18/274 (6%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-RYY 423
            +   A + L  E   + D   K+    +     +               IK +   +  
Sbjct: 190 RHLGEAKKSLENELKAIGDSEIKQLLREQEKLEQEIERIHTRQT-----EIKQELEYQQT 244

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK--LSKKPS 481
           + +   +RLQ+L      +        +KN+     +   + L +    +G   L    +
Sbjct: 245 FKKETGNRLQELSAAKELQQRRQELENQKNSNQESLRQTREALKKIISARGYTVLLSDTT 304

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            +   ++  L     +     +      + +  L+       +D  E  +     +   L
Sbjct: 305 AQFRTIINQLKQQGELTAGISR-----EFIHELLKSQRCICGADLHEGNHAHTN-VSLWL 358

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            + G   + +   R             A   +V +   +   L +    +  + E I+++
Sbjct: 359 NQAGSSAVEETAIRMSAQVDEIDKQAIAFWEEVDKEQARINQLRQNISQVENELETIQER 418

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           + +       E+ + L   L E+  +I ++  ++
Sbjct: 419 LRKDAN----EEISSLQKRLDEIESKIDELNREQ 448


>gi|332025879|gb|EGI66035.1| Myosin-XVIIIa [Acromyrmex echinatior]
          Length = 1454

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 90/251 (35%), Gaps = 31/251 (12%)

Query: 407  HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             + +    +++Q  R    +  + +     Q  + +        ++ AR ++     +  
Sbjct: 932  EMHDIRLLLEEQTARNNLLEKKQRKFDSETQNLMNDLRQEKAQRERLAREKEIAIAEKFT 991

Query: 467  MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS-----F 521
            ++ +L   +L     L+E  L           +   QEL ++ +     +++        
Sbjct: 992  VEQNLSDARLE--IELKEERL-----------RTLTQELEELTFGGKTEEEVAQLKKAKH 1038

Query: 522  LFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVR---- 575
                  + +    +++  ++   E+    L   +++Q ++        +  + DVR    
Sbjct: 1039 ELEKRAKDQEEELDDLAGQVQLLEQAKLRLEMSIEQQRKEMRKEMQQRDEELEDVRGNAH 1098

Query: 576  ----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---LISILHEVHIQI 628
                    Q    ++   +L R+K E+E+++  +  +  A++ A    +  +  ++    
Sbjct: 1099 KKVKTLESQLENEHEERTILLREKHELERRLVALEEQDRADRAAEAETMQRLKRDLKRTK 1158

Query: 629  HQIESQEAMIE 639
              +   + M+E
Sbjct: 1159 ALLRDAQTMLE 1169


>gi|321272328|gb|ADW80210.1| RepA [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage
           WOVitB]
          Length = 706

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 14/76 (18%)

Query: 60  GFYYCFSCHVKGDHLSFL----SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT 115
           G ++ F+    GD +              F E +  +A   G          +K  +   
Sbjct: 76  GLWHDFATGEGGDIIDLWAGVNRKSTRIEFPEVMASIAEWFG----------KKHTRKYK 125

Query: 116 DLIRLIEVATDFFHHS 131
           +L + +  + +++  +
Sbjct: 126 NLEQFLTCSWNYYDEN 141


>gi|301764413|ref|XP_002917627.1| PREDICTED: dystrophin-like, partial [Ailuropoda melanoleuca]
          Length = 3669

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 85/265 (32%), Gaps = 28/265 (10%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
             +    L  + K+  N  ++      +       L +  +K   +     +  K      
Sbjct: 1659 EEWLNLLLEYQKHMENFDQNVDYITNWIVQAEALLDESEKKKPQQKEDILKRLKAEMNDM 1718

Query: 458  DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT-----LINHPAILQEQYQELADIRYDN 512
              K  S R   ++L+  +      + E  +         I+H     +    L ++   N
Sbjct: 1719 RPKVDSTRDKAANLMANRGDHCRKVIEPKISELNHRFAAISHRIKTGKASIPLKELEQFN 1778

Query: 513  NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEA 569
            +++QKL   L ++  +      E+ ++ + E       ELL++ D   +         E 
Sbjct: 1779 SDIQKLLEPLEAEIQQGVNLKEEDFNKDMSEDNEGTVKELLQRGDNLQQRITDERKREEI 1838

Query: 570  NIVD--------------------VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
             I                        +   Q     ++   L +  ++IEK++A +    
Sbjct: 1839 KIKQQLLQTKHNALKDLRSQRRKKALEISHQWYQYKRQADDLLKCLDDIEKKLASLPEPK 1898

Query: 610  EAEKTAILISILHEVHIQIHQIESQ 634
            +  K   +   L +   +++ +  Q
Sbjct: 1899 DERKIKEIDRELQKKKEELNAVRRQ 1923



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 50/450 (11%), Positives = 128/450 (28%), Gaps = 34/450 (7%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +     ++      ++L N    LN + K   +
Sbjct: 2513 ELITAAQNLKNKTSNQEARTIITDRIERI----QSQWDEVQEHLQNRRQQLNEMLKDSTQ 2568

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + +  +A             T+   + L +    + +  D  
Sbjct: 2569 WLEAKEEAEQVLGQARAKLETWKEAPYTMDAIQKKITETKQLAKDLRQWQINVDVANDLA 2628

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2629 LKLLRDYSADDTRKVHMITENINASWASIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 2687

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 2688 WLTEAETTANVLQDATHKERLLEDSKGVRELMKQWQDLQGEIEAHTDIYHNLDENGQKVL 2747

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2748 RSLEGSEDAALLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 2807

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2808 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGL- 2865

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                       L+    E    +  Q   +   L K+   ++ + E++   +     + +
Sbjct: 2866 ---------EKLYQEPRELPPEERAQNVTRL--LRKQAEEVNTEWEKLN--LHSADWQRK 2912

Query: 611  AEKTAILISILHEVHIQIHQIESQEAMIEG 640
             ++    +  L E   ++     Q  +I+G
Sbjct: 2913 LDEALERLQELQEATEELDLKLRQAEVIKG 2942


>gi|261245071|ref|NP_001153978.1| fish virus induced TRIM protein [Oncorhynchus mykiss]
 gi|225310533|emb|CAP08934.1| fish virus induced TRIM protein [Oncorhynchus mykiss]
          Length = 551

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 37/90 (41%)

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
           F E  K+L    +    +  + ++ + D  Q + + +   +R     ++    +++    
Sbjct: 213 FQEREKELKELQQAVESFKLSAQSAVEDSDQIFTELIRSIERRSSEVKELIRAQEKAQVS 272

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQE 635
            A+G  E+    I+ L +   ++ Q+   E
Sbjct: 273 QAEGLLEQLKQEIAELRKRSTELEQLSHTE 302


>gi|47605990|sp|P70336|ROCK2_MOUSE RecName: Full=Rho-associated protein kinase 2; AltName:
            Full=Rho-associated, coiled-coil-containing protein
            kinase 2; AltName: Full=p164 ROCK-2
 gi|1514698|gb|AAC53133.1| Rho-associated, coiled-coil forming protein kinase p160 ROCK-2 [Mus
            musculus]
          Length = 1388

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 101/288 (35%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 822  MSEKQIKQENNHLMEMKMNLEKQNTELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 881

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   +                 K  S++L +S   +    L K
Sbjct: 882  ELKEENEEKTKLCKELQQKKQDLQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 941

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 942  EKIMKELEIKEMMARHKQELTEKDTTIASLE---ETNRTLTSDVANLANE-----KEELN 993

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  +++ R    QA+     +  R   + R 
Sbjct: 994  NKLKDS--QEQLSKLKDEEMSAAAIKAQFEKQLLNERTLKTQAVNKLAEIMNRKEPVKRG 1051

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1052 SDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1096


>gi|297733886|emb|CBI15133.3| unnamed protein product [Vitis vinifera]
          Length = 881

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 14/136 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +     +   L S   E      + +   +              + + +      
Sbjct: 362 AIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALE------KEKDKASKARLVE 415

Query: 567 TEANIVDVRQGYQQALALYKR-------FRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
               + D+R   Q  +  YK+        R L +++EE+   + +   + +  + A L  
Sbjct: 416 VRRELDDLRDKLQPLMMKYKKEKERIDELRRLKQKREELLFALQEAERRYDLARAADLRY 475

Query: 619 SILHEVHIQIHQIESQ 634
             + EV   I  +E  
Sbjct: 476 GAIQEVEAAIANLEGT 491


>gi|237803342|ref|ZP_04590927.1| DNA primase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025323|gb|EGI05379.1| DNA primase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 146

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 48/131 (36%), Gaps = 8/131 (6%)

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           L TL++HP + ++  +  +    ++  + +L   L     +       ++  R      G
Sbjct: 12  LRTLLHHPELAEKV-ENASHFAAEDQSIAQLLVALIEARQKNPNLRSLQLIARWHGTEQG 70

Query: 548 ELLKQL-------DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            LL+ L       +    +   +   T+ +     +   Q +   +   L + +K ++ K
Sbjct: 71  RLLRALAEKEWLIEADNLEQQFFDTITKLSADQRSRNIDQLIRKDRDTGLTAEEKAQLVK 130

Query: 601 QIAQVTAKGEA 611
            +++  +    
Sbjct: 131 LLSRNDSAQNP 141


>gi|268315719|ref|YP_003289438.1| hypothetical protein Rmar_0142 [Rhodothermus marinus DSM 4252]
 gi|262333253|gb|ACY47050.1| hypothetical protein Rmar_0142 [Rhodothermus marinus DSM 4252]
          Length = 1016

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 70/244 (28%), Gaps = 36/244 (14%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             + DRL+Q  +          R +    + R  +  ++       ++  L +  + RE 
Sbjct: 319 DRLADRLEQAVRMPRARVVEQFRSYFDRVQERLAQALAEETDDPERLRQHLQEALTARE- 377

Query: 486 ALLLTLINHPAI--LQEQYQELADIRYD---------------NNELQKLW--------- 519
           +L   L   P +  L    +  A   +                +   + L          
Sbjct: 378 SLRQQLYQQPDLRQLSTVLEAPARDEWAAVTATVQTLPEQCVLHPAGRTLRPEGPALTIP 437

Query: 520 --SFLFSDFVEQKYFLPEEIHQRLCERGFG-----ELLKQLDRQVRDAGLWSATTEANIV 572
             + +            E    RL +         E + ++     +A L     EA   
Sbjct: 438 LRALVLEHLEPPWPEHLEAASLRLRQAVLKSWSALEEVLEIVGYNLEAALDEIRAEAPGG 497

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           D+R   ++        +   R+ EE  +++ +            + S    +  ++    
Sbjct: 498 DLRTRLEEL--ALGSLQHAGRRLEESTRELEEALGAFREALAEEIRSDWRTLEQRLQAEM 555

Query: 633 SQEA 636
           +Q A
Sbjct: 556 AQRA 559


>gi|189237869|ref|XP_975113.2| PREDICTED: similar to CG1347 CG1347-PA [Tribolium castaneum]
          Length = 1278

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 85/269 (31%), Gaps = 10/269 (3%)

Query: 379  LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-----YYYSQAIRDRLQ 433
                +    +           +  ++       I  ++D+  R        SQ   +  +
Sbjct: 866  KEKQEREIVQRLTVDHELEISDFRKIAQSKNEEIKGLRDENARLSSELRKVSQENLELKE 925

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
             L               K+      +K  S +     L     S+  ++R    L+T+  
Sbjct: 926  GLEAMSCKSSKEMDDMKKRMDEVLAEKERSTKEEIERLKSEYKSEMENIRARFKLMTMER 985

Query: 494  HPAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
             P+  +   +++    Y +    + L   +  +F  +K     +   +  +R    L  +
Sbjct: 986  SPS--ENSLEKIERGDYPSITNHEALLLQMTENFESEKEVAVSDAVSKESQRWQKILDDR 1043

Query: 553  LDRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            + +   D     A    NI     +   +Q   L ++   L+ +  + +  I Q+    E
Sbjct: 1044 IKQMECDFEQEKAFLIQNIQSRIQQDQEKQINQLREQINNLNLECIKYKDTIQQLAEYRE 1103

Query: 611  AEKTAILISILHEVHIQIHQIESQEAMIE 639
                  L+  +  +  +   ++++   I+
Sbjct: 1104 ESDCNELMRRIDSLEREKTALKNELKRIK 1132


>gi|149751388|ref|XP_001499971.1| PREDICTED: similar to progerin isoform 2 [Equus caballus]
          Length = 613

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQAAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|145640973|ref|ZP_01796555.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274487|gb|EDK14351.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 708

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 76/244 (31%), Gaps = 37/244 (15%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK----- 478
           Y     +RL+ +  +   E      +  +             +   +L+K  L++     
Sbjct: 103 YRGEFEERLKAVLNELSKEEGRVILFIDEIHTMVGTGKTDGAMDAGNLLKPSLARGELHC 162

Query: 479 --KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
               +L E       I   A L+ ++Q++        +   +   L   +    +    +
Sbjct: 163 VGATTLDEY---RQYIEKDAALERRFQKVFVDEPSVEDTIAILRGLKERYEIHHHVDITD 219

Query: 537 ---------IHQRLCERGF-GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA----- 581
                     H+ + +R    + +  +D       +   +    +  + +   Q      
Sbjct: 220 PAIVAAATLSHRYISDRQLPDKAIDLIDEAASSIRMEIDSKPEPLDRLERRIIQLKLEQQ 279

Query: 582 -------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-----TAILISILHEVHIQIH 629
                   A  KR  +L ++  E E++ A++    ++EK     +  +   L  V  ++ 
Sbjct: 280 ALQKEEDEASRKRLEMLEKELAEKEREYAELEEVWKSEKATLSGSQHIKQELDTVKTELE 339

Query: 630 QIES 633
           Q   
Sbjct: 340 QARR 343


>gi|332265068|ref|XP_003281548.1| PREDICTED: cytospin-B isoform 2 [Nomascus leucogenys]
          Length = 1068

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 91/280 (32%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   ++  TE+    
Sbjct: 496 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLERLKTENGSLK 555

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   Q    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 556 SHLQGEKQKATQASAVEQTAES--CEVQEMLKVARAEKDLLE--LSCSELRQELLKANGE 611

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 612 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 671

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + E    
Sbjct: 672 VEQHRAVKLHNNQLISELESNVIK----------LEEQKSDLERQLKTLTKQMKEETEEW 721

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 722 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 761


>gi|332223579|ref|XP_003260949.1| PREDICTED: golgin subfamily A member 5 [Nomascus leucogenys]
          Length = 731

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 78/269 (28%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK----LRYYYSQAIRDRLQ 433
           +      + K   +            LE         I+DQ     L+    Q +++RL 
Sbjct: 296 AKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIIQDQSEGNSLQNQALQTLQERLH 355

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 356 EADATLKREQESYKQMQSEFA---------ARLNKVEMERQNLAEAITLAER-------K 399

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    +   +    ++     L+     L     +        E++   L E    E L 
Sbjct: 400 YSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLD 459

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 460 STTANSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHD 519

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   IE
Sbjct: 520 QITGQKASK--QELETELERLKQEFHYIE 546



 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 96/255 (37%), Gaps = 12/255 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSG 445
            E +       +   +++      +N +  +  R   ++A  + +R     +K + E   
Sbjct: 355 HEADATLKREQESYKQMQSEFAARLNKV--EMERQNLAEAITLAERKYSDEKKRVDELQQ 412

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             + +K N     Q+    +   + +++ K     SL+E +    L +  A   E  +  
Sbjct: 413 QVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSTTANSMELEELR 472

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +      E+QKL   +     E +    +++++        E L+ L  Q+        
Sbjct: 473 HEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEA---ESAREQLQDLHDQITGQKASKQ 529

Query: 566 TTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             E  +  ++Q +      LY+    L  + ++ E++I ++  +   +  +       E+
Sbjct: 530 ELETELERLKQEFHYIEEDLYRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNSSQ--SEL 587

Query: 625 HIQIHQIESQEAMIE 639
             ++HQ+   E +I+
Sbjct: 588 ENRLHQL--TETLIQ 600


>gi|325089567|gb|EGC42877.1| anucleate primary sterigmata protein B [Ajellomyces capsulatus H88]
          Length = 1928

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 70/225 (31%), Gaps = 25/225 (11%)

Query: 429  RDRLQQLFQKYI-TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            ++RL Q  +     +  G G          ++     +   +S     +  + S  E   
Sbjct: 940  KERLYQEIEDLKLGQRRGDGGRSVAGDSIFERSVSRAQDRSNSHASDGVRSRASDAERES 999

Query: 488  LLTLINHPAILQEQYQELADIRYDNNELQKLWS-------FLFSDFVEQKYFLPEEIHQR 540
            L   I +  +       ++ ++ +N  L+            L   +        E++   
Sbjct: 1000 LE--IKNGELR----DHVSALKLENQSLRTQLDECMSDLVALDRAYQADVEQAEEDLQTM 1053

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEAN---------IVDVRQGYQQALALYKRFRLL 591
              ER     + +   +        A  E +         I + ++   +    ++  + L
Sbjct: 1054 QLERDHALQIAEEREEALQDLKAEAQEELDAMGDELDQKIDECQRMEAELANQHENLKAL 1113

Query: 592  SRQKEEIEKQIAQVT--AKGEAEKTAILISILHEVHIQIHQIESQ 634
              +     + I ++   A+   +K   +   L + + ++ Q+E  
Sbjct: 1114 QAEMRSASEGIIRLEEDAQSNLQKYKAVQQELDDANRELEQMEKS 1158


>gi|322828671|gb|EFZ32385.1| OSM3-like kinesin, putative [Trypanosoma cruzi]
          Length = 1107

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 86/269 (31%), Gaps = 33/269 (12%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           +L   + +      +   +  D+       L + I  + D  +   + + +   + +  +
Sbjct: 703 NLDAHEAVMYAGMLSNLHDAVDKAQTHRNRLLDAIAALPDTPV--DFKEELSKLVGENDE 760

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
                           AR  +++  +            + K+   RE  LL  +      
Sbjct: 761 LRKMYKDAIKVTETAQARVVEEQRRTVSEESVQAQIDSVRKEYEARERELLAAM------ 814

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
                     +  ++ + + + + L  +                 ++    L   L+ + 
Sbjct: 815 ---------KLDENSGDGKAVLALLNKNASGGGAVSEAA------QKEIESLRSDLEEER 859

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEAEK 613
                   + EA  V+++   Q+      R+  L  +  E+    E+Q+    A G   K
Sbjct: 860 VKREKLVQSKEAQQVELKALRQELAESESRYVDLEGKMNEMVSDYERQL--ANAHGSTGK 917

Query: 614 TAILISILHEVHIQIHQI----ESQEAMI 638
            A L + L E   Q+ Q+    E Q+A+I
Sbjct: 918 IADLTARLKERTDQLDQMRGLLEKQKALI 946


>gi|322493397|emb|CBZ28683.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 762

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 13/126 (10%)

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV--------DVRQGY 578
             +       + Q L +    +  K+L +++         T  +I         D+    
Sbjct: 561 KNEPRVDEAAMLQLLADEKVEQTRKKLKQEISKTIREEEKTRKDIAQRASKAYHDLCDRL 620

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-----ES 633
           +Q     ++      +KEE E+Q      K   E+TA L S L  +  +  ++     ++
Sbjct: 621 RQETKRTQKEVADRERKEEQERQRELDKIKQAQEQTAELKSRLQSLKKENAELVQSKQDA 680

Query: 634 QEAMIE 639
            +A  E
Sbjct: 681 TQAAKE 686


>gi|301025623|ref|ZP_07189146.1| phage tail tape measure protein, lambda family [Escherichia coli MS
           69-1]
 gi|300395943|gb|EFJ79481.1| phage tail tape measure protein, lambda family [Escherichia coli MS
           69-1]
          Length = 1077

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 5/122 (4%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L + L +   +Q          ++    F    +++    R+    +           + 
Sbjct: 146 LAAALRNLEQQQDELNAAFASGKINGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQ 205

Query: 578 YQQALALYKRFRLLS---RQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIE 632
                 L  +   +     +  E +KQ+ +  AKG    E    L   L  +  ++   +
Sbjct: 206 VAALQRLIAQLDPVGTAFNRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEVTQ 265

Query: 633 SQ 634
           SQ
Sbjct: 266 SQ 267


>gi|297695742|ref|XP_002825090.1| PREDICTED: golgin subfamily A member 5-like [Pongo abelii]
          Length = 731

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 78/269 (28%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK----LRYYYSQAIRDRLQ 433
           +      + K   +            LE         I+DQ     L+    Q +++RL 
Sbjct: 296 AKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIIQDQSEGNSLQNQALQTLQERLH 355

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 356 EADATLKREQESYNQMQSEFA---------ARLNKVEMERQNLAEAITLAER-------K 399

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    +   +    ++     L+     L     +        E++   L E    E L 
Sbjct: 400 YSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLD 459

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 460 SSTANSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHD 519

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   IE
Sbjct: 520 QIAGQKASK--QELETELERLKQEFHYIE 546


>gi|240275463|gb|EER38977.1| RNA polymerase Rpb1 C-terminal repeat domain-containing protein
           [Ajellomyces capsulatus H143]
          Length = 1338

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/351 (9%), Positives = 107/351 (30%), Gaps = 33/351 (9%)

Query: 284 LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343
            +      +   + + +    Y +  +   +  ++   +G         K    V  +  
Sbjct: 321 AAAHHYLHEPSPAPISSPHYSYNIPGVHPYANPMIPPHNGVSFDPHTVGKMAVTVPSYHT 380

Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
           P              P    R   + ++ +   ++    D    RE         ++  +
Sbjct: 381 PVRSSTMDSPYT---PYHHARRSSRASYGRGYADAYYNNDYGPVREPAPVQPPVIEDGRD 437

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
              + +     +  +         I   +     +     +    + +  A+H +     
Sbjct: 438 ASKNGEGLNISLLSRI--QSIIPDISQLVISYRDQQTQLSAREAEHKQIEAQHEESLMRK 495

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           +  +++   + + +   S +E               +    + ++R++   LQ+      
Sbjct: 496 EYYIEALQTQMQKTANESAKE-------------CSKLKGRINELRFELGGLQE-----K 537

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               E+     ++ +  L  +   +L +++D   R         E  +   R+  ++A  
Sbjct: 538 QKDAEESLADAQKENDEL-SQLREDLQEEIDNLQRAIQEEKEAHEQELERQREKEKEA-- 594

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                  L  QK+++E    ++  + +      L +   E+  +  +++++
Sbjct: 595 -------LDNQKQDLEGYFQEIKNEDDRLAAEQLQAREQELTDERDKLKAE 638


>gi|195469527|ref|XP_002099689.1| GE16579 [Drosophila yakuba]
 gi|194187213|gb|EDX00797.1| GE16579 [Drosophila yakuba]
          Length = 952

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 77/245 (31%), Gaps = 23/245 (9%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            E   ++T +E       L +    + D +      + + +    LFQ          R 
Sbjct: 253 MEETHYSTNEELQATLQELADLQTQLTDTQTEN---ERLAEEKDVLFQSLC-------RQ 302

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
            +K    R Q    Q L+     +       S RE  LL        +++   +E   + 
Sbjct: 303 TEKLNESRTQISTLQELLLRDTKQPAPEVSASEREQKLL-------DLIKTSQEEREAVL 355

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               EL    + +       +    +E+ ++        L  QLD    +     A    
Sbjct: 356 LKQEELGSELAEVKQAREAGQ----QELQRQRERIAL--LDSQLDAANAERRQGEAQFSQ 409

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            + ++ Q   +   L         + EE+E  +++      ++   +       +  ++ 
Sbjct: 410 AMEEISQRAIEISRLSTLLENARSKIEELEADLSRGDKTDLSDVLDVARKEKDALEERVA 469

Query: 630 QIESQ 634
           +++ Q
Sbjct: 470 ELQDQ 474


>gi|166091476|ref|NP_001100860.2| transcription elongation regulator 1 [Rattus norvegicus]
          Length = 1081

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 31/347 (8%), Positives = 104/347 (29%), Gaps = 42/347 (12%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++ L   +P ++              +   +   +     +         +D DS   
Sbjct: 565 EDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPIKAKKRKRDDNKDIDSEKE 624

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              +   +     ++  ++   K+  +          +  E  L   +   +       Y
Sbjct: 625 AAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPR-------Y 677

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                  L    +K + +     R  ++    +++   ++   +  + + K + + +  E
Sbjct: 678 L-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSE 732

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            A              +++ +  +     + + L++   +   +++    +   +++   
Sbjct: 733 FAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKEDSKTRGEKIKSD 781

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQALALYK---RFRL 590
            F  L                  E++             D+ + Y + +A      + + 
Sbjct: 782 FFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKE 841

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 842 LERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 883


>gi|2745840|gb|AAC25483.1| postsynaptic density protein [Rattus norvegicus]
          Length = 1618

 Score = 42.2 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 37/299 (12%), Positives = 96/299 (32%), Gaps = 40/299 (13%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
             +   +   EKL         +  K        ++ + + +    ++   N +KD    
Sbjct: 197 QAKERAERELEKLHNREDSSEGIKKKLVEAEERRHSLENKVKRLETMERRENRLKDDIQT 256

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+               +         +++ + + K       
Sbjct: 257 KSEQIQQMADKILELEEKHREAQVSAQHLEVHLKQKEQHYEEKIKVLDNQIKK------- 309

Query: 481 SLREAALLLTLIN-HPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            L +   L T++  H     E+ + L++    I   +++++ L   +       K     
Sbjct: 310 DLADKESLETMMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANS 369

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALAL 584
            +  +   +   E++ +L +Q       +   EA    + +  +           + L L
Sbjct: 370 SLFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKNRLLEL 429

Query: 585 YKRFRL-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             R R            L RQ  E++  + +  +     +   L +    +  Q+ Q +
Sbjct: 430 ETRLREVSLEHEEQKLELKRQLTELQLSLQERES-----QLTALQAARAALESQLRQAK 483


>gi|325978039|ref|YP_004287755.1| ABC transporter ATPase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177967|emb|CBZ48011.1| ABC transporter ATPase, ATP-binding cassette,sub-family F, member 3
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 639

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 18/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +     +       +    L +
Sbjct: 472 NHLDIDSKEVLEDALIDFDGTLLFVSHDRYFINRVATKVLEISEKGSTLYLGDYDYYLEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E +++L  +       +   +A   D    YQ   A  K  R L+R+  EIE Q+ 
Sbjct: 532 KAELEEMERLKAEEAQEKTVAIVEKAPAND----YQAQKANQKELRKLTRRIAEIENQLE 587

Query: 604 QVTAKGEAEKTAILIS----ILHEVHIQIHQI-ESQEAMI 638
            + A+ EA   A+L +     L ++  ++  + E QE ++
Sbjct: 588 DIEAREEAINQAMLATNDAVELVDLQKELDDLTEQQEKLM 627


>gi|321272271|gb|ADW80156.1| RepA [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage
           WOVitA1]
          Length = 706

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 14/76 (18%)

Query: 60  GFYYCFSCHVKGDHLSFL----SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT 115
           G ++ F+    GD +              F E +  +A   G          +K  +   
Sbjct: 76  GLWHDFATGEGGDIIDLWAGVNRKSTRIEFPEVMASIAEWFG----------KKHTRKYK 125

Query: 116 DLIRLIEVATDFFHHS 131
           +L + +  + +++  +
Sbjct: 126 NLEQFLTCSWNYYDEN 141


>gi|312370898|gb|EFR19201.1| hypothetical protein AND_22909 [Anopheles darlingi]
          Length = 755

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/260 (11%), Positives = 83/260 (31%), Gaps = 15/260 (5%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
           D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 357 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 416

Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
           +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 417 NKANAEAQKNIKRYQQQLKDVQSALEEEQRARDDAREQLGISER-------RANALQNEL 469

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE----EIHQRLCERGFGELLKQLDRQV 557
            +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 470 EESRTLLEQADRGRRQAEQELSDAHEQLNEVSAQNASIAAAKRKLESELQTLHSDLDELL 529

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
            +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  ++  L
Sbjct: 530 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAESNAL 589

Query: 618 ---ISILHEVHIQIHQIESQ 634
                 + ++  ++ ++ES+
Sbjct: 590 KGGKKAIQKLEQRVRELESE 609



 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 41/329 (12%), Positives = 95/329 (28%), Gaps = 23/329 (6%)

Query: 329 RAAYKAIDLVLCHLIPGNRVNFVLLSRGED-PDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
               + ID  +               R  D   + +    K   E L ++     D+   
Sbjct: 350 SQVRQEIDRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINEL 409

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA-------IRDRLQQLFQKYI 440
               + +     E  +     +  +  ++        ++        I +R     Q  +
Sbjct: 410 EIALDHANKANAEAQKNIKRYQQQLKDVQSALEEEQRARDDAREQLGISERRANALQNEL 469

Query: 441 TEHSGYGRYWKKNARHRDQK--GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
            E         +  R  +Q+     ++L + S     ++      E+ L     +   +L
Sbjct: 470 EESRTLLEQADRGRRQAEQELSDAHEQLNEVSAQNASIAAAKRKLESELQTLHSDLDELL 529

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            E        +    +  +L   L     EQ +   +E  ++  E+   EL  +LD    
Sbjct: 530 NEAKNSEEKAKKAMVDAARLADEL---RAEQDHAQTQEKLRKALEQQIKELQVRLDEAES 586

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLL--------SRQKEEI--EKQIAQVTAK 608
           +A          +    +  +  L   +R             R+ +E+  + +  +   +
Sbjct: 587 NALKGGKKAIQKLEQRVRELESELDSEQRRHADAQKNLRKSERRIKELTFQSEEDRKNHE 646

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEAM 637
              +    L   +     QI + E   A+
Sbjct: 647 RMQDLVDKLQQKIKTYKRQIEEAEEIAAL 675


>gi|281358244|ref|ZP_06244727.1| Apolipoprotein A1/A4/E [Victivallis vadensis ATCC BAA-548]
 gi|281315334|gb|EFA99364.1| Apolipoprotein A1/A4/E [Victivallis vadensis ATCC BAA-548]
          Length = 1243

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 95/292 (32%), Gaps = 39/292 (13%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ-----K 419
                  ++   ++   +       TEN      + +A+ +  L        D       
Sbjct: 679 EQQIAYLKETTQKTTDDLQKQIDSLTENYDRQITELKADYDARLAALEQKSDDADAELKA 738

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
               Y +A+R+++    ++                  R +    +   +   VKG++   
Sbjct: 739 AMEAYVEALREQMTVADEETRARLQAQLDNLSGAFNERLEVILQEYEQRIEKVKGQIEDL 798

Query: 480 PSLREAALL--LTLINHP------AILQEQYQELADIR---YDNNELQKLWSFLFSDFVE 528
            S  +  L+    L+          + +    ++A+++     + E   L+    +   +
Sbjct: 799 ESDTKTELITQKALLEQECRNKIANLNRSYADKIAELQKKLSGDPENADLYYAQIAALEK 858

Query: 529 QKYFLPEEIHQRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                  E+  ++ E      +L+ ++DRQ+R     SAT         +   + + L  
Sbjct: 859 -------ELTSKISETNLSYQKLILEIDRQLRQLSDKSAT---------ELLAELMELQN 902

Query: 587 RFRLLSRQKE-----EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +  ++          +    +   T +   +  A L + L E+  Q+  +++
Sbjct: 903 KRDIVEAAINSSDYSDKLAALDAGTRQNADDAHAELEAKLAELEKQLEALKA 954


>gi|118489195|gb|ABK96404.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 218

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 65/180 (36%), Gaps = 27/180 (15%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           S     S++ K ++      REA ++          ++  +E         E  +L  ++
Sbjct: 2   SSSTNPSTMFKPEIGPDGLPREAPVIAY-------TEKIIEE---------EQLQLRKYI 45

Query: 523 FSDFVEQKYFLPE----EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
             ++ + +    E        +L        L+ L +++  +       +    + R+  
Sbjct: 46  EENYSKIRDVERELGNLTFEMKLTAGPKKAALEHLRKKIEMSTERIRVAKLKEEEARKAL 105

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           + A         + +++EEI++++ +   +   E +    S L E+  ++  +    A +
Sbjct: 106 EAATK-------VVKEEEEIKQKLCEDLNQLVQESSHSQFSRLEELKRRLEALNPSRASM 158


>gi|163754567|ref|ZP_02161689.1| hypothetical protein KAOT1_16768 [Kordia algicida OT-1]
 gi|161325508|gb|EDP96835.1| hypothetical protein KAOT1_16768 [Kordia algicida OT-1]
          Length = 1141

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/209 (11%), Positives = 78/209 (37%), Gaps = 6/209 (2%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           ++LQQ  +          +  K+    +      +   + +    K  +K   R+     
Sbjct: 496 EQLQQQNETIKDLDKSLEKLQKQQDELKKISKEQKEKSELNFNDRKKLEKFLQRQEQNDQ 555

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +      LQE  ++       ++E ++L         ++     E++ + L +      
Sbjct: 556 MMEKFSKQLQENLEDFQKEETKDDEDKELLKERLERQQKELEKN-EKLMEELKKLAEKIS 614

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK- 608
            ++L  ++ + G     ++ N+  + +   +   + K+   + ++ +E+ K+  +++ K 
Sbjct: 615 EEELQEKLEELGKQQQNSKKNLQQILE-LTKRYYVTKKAEKIQKELQELAKEQEELSKKS 673

Query: 609 ---GEAEKTAILISILHEVHIQIHQIESQ 634
                 E+   L     ++  Q+ +++ +
Sbjct: 674 GDQNTKEQQEELNKKFEDLQKQMDELDKE 702


>gi|114556832|ref|XP_513444.2| PREDICTED: protein Hook homolog 1 isoform 4 [Pan troglodytes]
 gi|114556834|ref|XP_001156562.1| PREDICTED: protein Hook homolog 1 isoform 3 [Pan troglodytes]
          Length = 728

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 104/304 (34%), Gaps = 25/304 (8%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D             + ++  + 
Sbjct: 269 DDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQ 328

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      +R +++ L +  +          ++  +    +   +   +            
Sbjct: 329 KLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSE 388

Query: 481 SLREAALLLTLIN----HPAILQEQYQELAD---IRYDNNELQ--KLWSFLFSDFVEQKY 531
           S R   L   +      H A+L+E+ + +     ++  N EL+  ++     +       
Sbjct: 389 SKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTDASAT 448

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALA------- 583
              E +   +    + E+  +L  + +   L    +E   I ++++  +Q          
Sbjct: 449 KSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELET 508

Query: 584 ----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQE 635
                 +R R L +Q E+++K + +  +K E E ++ L   L     ++     +++ ++
Sbjct: 509 EQRLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQ 568

Query: 636 AMIE 639
            +IE
Sbjct: 569 ELIE 572


>gi|74220666|dbj|BAE31539.1| unnamed protein product [Mus musculus]
          Length = 642

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 161 DSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTAL 220

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 221 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 276

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 277 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 322

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 323 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 379

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 380 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 433

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 434 KLALDMEIHAYRKLLEGEE 452


>gi|85091486|ref|XP_958925.1| hypothetical protein NCU09346 [Neurospora crassa OR74A]
 gi|28920317|gb|EAA29689.1| hypothetical protein NCU09346 [Neurospora crassa OR74A]
          Length = 2295

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 37/86 (43%)

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            K+  +  ++        +    + R   Q A     R +  +R + E+++++A+   K +
Sbjct: 1467 KEASKAKKERRKLRKRLDREKEEARLREQAAAREELRRQAEARHQAELDQKVAETQRKLD 1526

Query: 611  AEKTAILISILHEVHIQIHQIESQEA 636
             EK   L     E   ++ +++ +EA
Sbjct: 1527 EEKARRLEQHQKEEIARLQRVKEKEA 1552


>gi|66823915|ref|XP_645312.1| hypothetical protein DDB_G0272472 [Dictyostelium discoideum AX4]
 gi|74876225|sp|Q75JP5|Y2471_DICDI RecName: Full=Calponin homology domain-containing protein
           DDB_G0272472
 gi|60473442|gb|EAL71388.1| hypothetical protein DDB_G0272472 [Dictyostelium discoideum AX4]
          Length = 1508

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 97/287 (33%), Gaps = 19/287 (6%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
           A  +    +  L     ++E E++      ER  LE   ++ +   +  + +    +   
Sbjct: 644 ALRQEKELAEKLKRERLEKEAEDKRIAQEIERKRLEKEKQDQLEKQRKLEQQRLQKEKDE 703

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             L    +K   E+    +  +      +++   ++  +    +    +     E   LL
Sbjct: 704 KELADRLEKERIENEIKEKQKQLEKIKLEKELAEKKEKERLQKEADEKRIADQLEFERLL 763

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            L     + ++  +E  +      E +++ +        +K    + I Q L  +   + 
Sbjct: 764 KLKQEKELAEKLEKERLEKEAAAEE-KRIAAEKLEKQRLEKEAEEKRIAQDLERKRLEKE 822

Query: 550 LKQ--LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIA 603
            ++  + + +    L     E  I   +   QQ LA       L ++ EE     EK+IA
Sbjct: 823 AEEKRIAQDLERKRLEKEAEEKRIAAEKLKQQQELAAKLEKERLEKEAEEKRIAQEKRIA 882

Query: 604 QVTAKGEAEKTAILISILH------------EVHIQIHQIESQEAMI 638
           +     + +K A  +                E+  +  + E++E  I
Sbjct: 883 EENRIAQEKKIAEELEKKRLQKEEQDRLAAAELERKRLEKEAEEKRI 929


>gi|326680136|ref|XP_684554.5| PREDICTED: a-kinase anchor protein 13 [Danio rerio]
          Length = 2550

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            + +     L KQ           +A  E      +Q   +   L +R   +  Q+EE ++
Sbjct: 2296 IEQEKQRSLEKQRQEVASLQKQQAAHAEERRRREKQWETREKELTQREMQIQSQEEEAQR 2355

Query: 601  QIAQVTAK-----GEAEKTAILISILHEVHIQIHQIESQ 634
            +  Q+  +      + E+    ++ L +   ++ +   Q
Sbjct: 2356 RARQLEEEKQELQSKKEEYQRDLARLRDSQKRLEREREQ 2394


>gi|309777558|ref|ZP_07672510.1| ClpB protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914647|gb|EFP60435.1| ClpB protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 852

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 75/212 (35%), Gaps = 11/212 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI + +   R +++          +  +++    + +      + + A+L       
Sbjct: 316 YRQYIEKDAALERRFQRVMVQEPSVEDTISILRGLKDRYESYHGVKILDEAILAAATMSN 375

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-------- 547
             + +++     I   +     L   + S   E      + +  ++ E            
Sbjct: 376 RYITDRFLPDKAIDLIDEACATLRVEMESMPQELDELQRKIMQLQIEETALKKEEDRKAK 435

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E L+ + +++ +      +      D +   +++     R   L + K ++E+   +   
Sbjct: 436 ERLEDIRKELSELQTEKDSLYTKWEDEKAELEESKDAKVR---LEKAKLDLEQAQNEARY 492

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +  A+     I  L ++  +    + ++A+I+
Sbjct: 493 EDAAKLQYATIPHLEKLIREQSDKQKEDALIQ 524


>gi|218291548|ref|ZP_03495422.1| chromosome segregation protein SMC [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218238643|gb|EED05868.1| chromosome segregation protein SMC [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 1190

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 66/223 (29%), Gaps = 15/223 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           +  I   L   F+    E             H ++KGP     Q      +   K    E
Sbjct: 636 ASRIARTLNHRFRVVTLEGDVIAPGGLMTGGHVNRKGPGLLGRQREREDLENKLKALEAE 695

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL-----PEEIHQ 539
            A L T      +     +   +      E       L     E++          E  +
Sbjct: 696 RARLST--RQKELRARVVELGRERDRLEAERAVRLGHLKQSEDEERQADFQLKTLAERME 753

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLSRQKEEI 598
            L          +   + R A +     EA   D       A+A  + R   L  +  E 
Sbjct: 754 ALDWEREALAADRSQIERRKAEVRDLLAEA--EDEVARLTAAIAERRDRLAALESELAEA 811

Query: 599 EKQIAQ-----VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           ++++        T + E E  A  ++ L E   ++ ++ ++ A
Sbjct: 812 KERLTGLRIEVATLEQERENLAQRMAELRERKARLERVHAEMA 854



 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 83/222 (37%), Gaps = 6/222 (2%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           ++L+   ++    R +   +  ++E +   R    N      +   Q+ ++    + K  
Sbjct: 242 EQLKRQVAREEAARNEAQERLRLSEEAWKARRQALNEATARLESLQQQYVEVVEARQKAE 301

Query: 478 KKPSLREAALLLTL---INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-- 532
              +L E  L        +     +E  ++LA++      + +  +   +   E+++   
Sbjct: 302 GSLALAEERLAALAQRAEDRRRRREELARDLAELEAAMEAVARAEAEAAAALGERQHLLA 361

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +           + + +L  ++ DA   +A        + + +Q     ++RF   +
Sbjct: 362 DARQRADDARRLELADEIDRLSGELIDANHRAAALRNEWKTLEEKFQAGALRHERFEEEA 421

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            + +  E+   +   +  A++   + S L E+  Q+  +E++
Sbjct: 422 ARIQ-AERDRVEAGKQERAQRAEEIRSELDELERQLAALEAE 462



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 43/132 (32%), Gaps = 13/132 (9%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                E      E I             K L+ + +   L     E     ++    +  
Sbjct: 373 LELADEIDRLSGELIDANHRAAALRNEWKTLEEKFQAGALRHERFEEEAARIQAERDRVE 432

Query: 583 A----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIH 629
           A      +R   +  + +E+E+Q+A + A+ E   +           L + +  +  ++ 
Sbjct: 433 AGKQERAQRAEEIRSELDELERQLAALEAEREQAASDEAQAVSAWHRLQADVQGLSSRLE 492

Query: 630 QIESQEAMIEGF 641
            +   EA  +G+
Sbjct: 493 LLRDLEAGYDGY 504


>gi|218257958|ref|ZP_03474425.1| hypothetical protein PRABACTJOHN_00078 [Parabacteroides johnsonii
          DSM 18315]
 gi|218225852|gb|EEC98502.1| hypothetical protein PRABACTJOHN_00078 [Parabacteroides johnsonii
          DSM 18315]
          Length = 319

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 26 DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79
             ++  N      W   P  +E  PSF  N  +  +  F+    G+ ++    
Sbjct: 22 PVKQQGINL-----WYKSPLREETEPSFKVNIERNQWSDFAIGKGGNIIALAQE 70


>gi|149048132|gb|EDM00708.1| lamin A, isoform CRA_b [Rattus norvegicus]
          Length = 665

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|126728270|ref|ZP_01744086.1| hypothetical protein SSE37_19807 [Sagittula stellata E-37]
 gi|126711235|gb|EBA10285.1| hypothetical protein SSE37_19807 [Sagittula stellata E-37]
          Length = 911

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 11/213 (5%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-VKGKLSKKPSLR 483
            Q + DR +++        S   R  +      ++    + L  S   ++  L    +  
Sbjct: 521 LQRVEDRGRRIDGLEAENRSLAARLAEVGGTAEERDAEVESLRASRARLESDLQVALARA 580

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRL 541
           EA  L        + Q   +  A      ++ + L   L +   E+       EE   RL
Sbjct: 581 EARDLEI----SDLRQSLAEAEARAAQQGDDARSLEEKLAAALAERMTAQTTAEETRDRL 636

Query: 542 CERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                   E  + LD Q+ +A            ++ Q  ++A     +   L+R   E+ 
Sbjct: 637 AAALARQREAEQALDTQLDEAEERQLLLSQARDELAQTRERASQSQLKVEALNRNVAELR 696

Query: 600 KQIAQVTAKGEAEKTAILISI--LHEVHIQIHQ 630
           +Q+ ++ A  +  K     S   L  +  +++ 
Sbjct: 697 RQLGELQALLDDAKARDAASEVQLQNLGSELNA 729


>gi|121702551|ref|XP_001269540.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
 gi|119397683|gb|EAW08114.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
          Length = 2125

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/277 (9%), Positives = 72/277 (25%), Gaps = 34/277 (12%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           +   E     K  I        R    + + + L+  +Q    E   Y +          
Sbjct: 605 ETVREAWETYKPEIELQNFGLERDEILECLTEGLKA-YQPQHEEAVTYDQVLAAVQAGIQ 663

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
             G    + +  + +          +     + +NH  +   + + L  +         L
Sbjct: 664 SFGQPPTITKDEVAQTVRECLEEHAQQTADRS-LNHEQLYAIRDEILQAVTESVATQSTL 722

Query: 519 ----------WSFLFSDFVEQ--KYFLPEEIHQ--RLCERGFGELLKQLDRQVRDAGLWS 564
                        + S   E    +F   +  +   +        +         A   +
Sbjct: 723 TRESLDSGLGRDEILSALSEGLEAHFDTAKKIEPAHITREDVANAINDAFAAHDSAVSKN 782

Query: 565 ATTEANIVDVRQGYQQAL---ALYKRFRLLSRQ--KEEIEKQIAQVTAKGEAEKTAILIS 619
              + +  ++     + L       R   L+++   E I   + +  +          + 
Sbjct: 783 VEPDVSREEILAAIAEGLENQNSMIREIELNKEDLMEAISAGLQEALSTVNLNTGEQALE 842

Query: 620 ILHEVHIQIHQ-------------IESQEAMIEGFGK 643
              ++  ++ Q             ++  EA+ +G G 
Sbjct: 843 RFQDLLQEMKQNVQERSANGEKETVQMLEAIKDGLGA 879


>gi|327355782|gb|EGE84639.1| RNA polymerase Rpb1 C-terminal repeat domain-containing protein
           [Ajellomyces dermatitidis ATCC 18188]
          Length = 1390

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 41/400 (10%), Positives = 115/400 (28%), Gaps = 36/400 (9%)

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+    +    + L +   +   ++         N  S            +       + 
Sbjct: 287 NNTNKEIEDPPQPLRHPSPSAAEIRLPSPSPSELNPRSNP---------AAAHHYLHGHP 337

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
            + + +    Y   ++      ++   +G      AA         +  P   +    + 
Sbjct: 338 PAPISSPHYSYGSPVVHPYVHPMIPPHNGASFDPHAASNMAVTAPSYHTP---MRSSTMD 394

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
               P    R   +T++ +   ++    D    RE         +               
Sbjct: 395 SPYSPYHHARRSSRTSYGRGYADTYYNNDYGPVREPAPVQPPVIENGKSASNG------- 447

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                     + ++  R+Q +          Y     + +    +    +   + SL++ 
Sbjct: 448 -------EGLNISLLSRIQSIIPDIGQLVISYRDQQTQLSAREAEHKQIEAQHEESLMRK 500

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +        +A +  T         +    ++++R +   LQ+    +     + +    
Sbjct: 501 EYY--IEALQAQMQKTANESAKECSKLKSRISELRLELGGLQEKQKDIEESLADAQKEND 558

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E    +L E    +L + +D   R         E  +   R+  ++AL   K+   L   
Sbjct: 559 E--LSQLRE----DLQEDIDNLQRAIEDEKEAHEEELAKQREQEKEALVNQKQE--LEGY 610

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +EI+ +  ++ A+    +   L     ++  ++   + +
Sbjct: 611 FQEIKNEDDRLAAEQLKAREQELTVERDKLKAELETEKQE 650


>gi|326920926|ref|XP_003206717.1| PREDICTED: Golgin subfamily A member 5-like [Meleagris gallopavo]
          Length = 735

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 80/213 (37%), Gaps = 8/213 (3%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           + +R     +K   E     +  K       Q+    +   + +++ K     SL+E + 
Sbjct: 399 VAERKYLDEKKRADELQQQVKVIKNQLESAKQELADYKQKATRILQSKEKLINSLKEGSG 458

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           +  L +  A   E  +   +      E+QKL   +     E +    +++ +        
Sbjct: 459 IEGLDSQTASTMELEELRHERDTQREEIQKLMGQMQQMRTELQDMETQQVSEA---ESVR 515

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVT 606
           E L+ L  Q+    +     EA +   +Q  +     LY+    L  + ++ E++I ++ 
Sbjct: 516 EQLQDLQEQIAAHKMAKQEAEAELERQKQELRYTEEELYRTKNTLQSRIKDREEEIQKLR 575

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +   +  +       E+  ++HQ+   E +I+
Sbjct: 576 NQLTNKALSSSSQ--TELENRLHQL--TETLIQ 604


>gi|310800602|gb|EFQ35495.1| TPR/MLP1/MLP2-like protein [Glomerella graminicola M1.001]
          Length = 2126

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 40/362 (11%), Positives = 105/362 (29%), Gaps = 30/362 (8%)

Query: 300  TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
            + L + Q  +  K      +  +        + +  +    H       + +     +D 
Sbjct: 1052 SHLRDSQAEVARKYEDEKTILDEEIKRLKEESERHAEAAKFHQQDLRAQSEITAKAQQD- 1110

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDML-----WKRETENRSFNTPDERAELEIHLKNCINH 414
                      A + +        ++       + E E+         +  E   +     
Sbjct: 1111 YEHELVKHAEAAKLVQQLRTEYNELKSQSATLRAEAESAKVALSQSESSWEERRQRLEQE 1170

Query: 415  IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
            + + K R     A    L +  +    + S       +NA   D    ++    S+    
Sbjct: 1171 MSEIKTRRDDVNAQNKLLHEQLESITKQFSAL--KEGRNASAEDAGNNAETGNDSAADGL 1228

Query: 475  KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--- 531
            +       RE  +L   + +   +QE  +    + Y  ++L +    L  +   Q     
Sbjct: 1229 RELNNYLRREKEILE--VQYDLKVQESKRLQQQLEYSQSQLDEARLKLDQERRAQAESGQ 1286

Query: 532  --FLPEEIHQRLCERGF-----GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                 +++  +L E          L  +L +        +A  E     V+    +   L
Sbjct: 1287 ASIAHKDLMDKLNELNLYRESSATLRNELAQARTQISEKNAKIEELEGKVQPLEARIEEL 1346

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKG----------EAEKTAILISILHEVHIQIHQIESQ 634
              +   L  + +++++   +   +           +  +   L   ++E+  +   ++  
Sbjct: 1347 QTQKGFLEEEIKQVQEDRDRWQKRTEGILTKYGRVDPAEMEQLKQTINELQAERDALKES 1406

Query: 635  EA 636
            EA
Sbjct: 1407 EA 1408


>gi|293370802|ref|ZP_06617348.1| ATP-dependent chaperone protein ClpB [Bacteroides ovatus SD CMC 3f]
 gi|292634162|gb|EFF52705.1| ATP-dependent chaperone protein ClpB [Bacteroides ovatus SD CMC 3f]
          Length = 862

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/212 (9%), Positives = 67/212 (31%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++           +  +++    + +      +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVQVDEPDNVSTISILRGLKERYENHHHVRIKDDAIIAAVELSS 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      +     +          +   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDKPKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           ++    L     +      +  +Q    L  + +    + E ++ +  +   +G+  K  
Sbjct: 437 EIIGKELAELKEQEKSFKAK--WQSEKTLMDKIQQNKVEIENLKFEAEKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L   + +   Q+  ++  +AMI+
Sbjct: 495 EIRYGKLQALDKEIEDTQKQLRDMQGDKAMIK 526


>gi|293379987|ref|ZP_06626087.1| hypothetical protein HMPREF0891_1643 [Lactobacillus crispatus
           214-1]
 gi|290923459|gb|EFE00362.1| hypothetical protein HMPREF0891_1643 [Lactobacillus crispatus
           214-1]
          Length = 774

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 89/271 (32%), Gaps = 14/271 (5%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           +L  +          +         +++  L++         ++  Y + +      +  
Sbjct: 236 ALNNIRHDLGYLDNPKDQYDQALNDKIDQALRDYSMQ----DIQRVYDEGLAKSKAAIVD 291

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRL--MQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +    ++G  +               Q+L    +   +   S    L+E   L    N  
Sbjct: 292 RLKEAYNGVTKKSLDKIVEGRTAAQIQQLVVKATQQKQNNQSDLSKLKENKALELKTNDE 351

Query: 496 AILQEQYQELADI------RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           A L E  ++L +        +++ E  K  +       EQ      ++ +   +    + 
Sbjct: 352 AALAEYKKQLEEKRNLALKNFNDQEELKTRNA-NEQIDEQLKADKAKVERVARDEEVQKR 410

Query: 550 LKQLD-RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             +LD  +   +  +      N       ++  L   +    L++++   +KQ+ Q  A+
Sbjct: 411 NSELDDSRTTISNDFDHAVRNNYDKNNDLFEDNLKKVQEKVRLAKEQINQQKQLDQEKAE 470

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            + ++ A       E+ ++   IE  E++ +
Sbjct: 471 EKRQREAEAARKERELDLKQKAIEQNESLAK 501


>gi|258570763|ref|XP_002544185.1| myosin-11 (Myosin heavy chain [Uncinocarpus reesii 1704]
 gi|237904455|gb|EEP78856.1| myosin-11 (Myosin heavy chain [Uncinocarpus reesii 1704]
          Length = 2413

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 90/290 (31%), Gaps = 23/290 (7%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +        K        +    + E EN      +    L   L++  +   D+ L   
Sbjct: 2012 KEASMEQTRKKYQMEFSGLTSELEIERENVLHIRGEN-TRLREELEDLRSKWDDEVLNSS 2070

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                 + R++   Q          R                R +++S  +    +  + +
Sbjct: 2071 TWAKEKSRMEMTLQDISNSREEAIRAHNDAQSKVVSLLSQVRNLRTSFDEVTAERDQATK 2130

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------FLFSDFVEQKYFLPEEI 537
            E   L   +       E+ + LA+    N  ++           L S   +Q+      +
Sbjct: 2131 EKRSLEGRLAE---TAERLESLANGE--NPSMRNAAEMDRDLLELKSKLAQQEDVATAAV 2185

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKR--------F 588
             +          +++     R+A       +A +   +++   + + L  +         
Sbjct: 2186 GKMRRAEALATEIQKEMVAEREATAQLFKDKAALEKQLKEAQLRCIDLETKGYSSASQDV 2245

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQEA 636
            R L ++ +E+E Q+    +K  AE+     +   + ++  QI + +   A
Sbjct: 2246 RFLHKRIQELETQLEDQESKRSAEQRSVRNVDRTVKDLQSQIERRDKMNA 2295


>gi|287328046|ref|NP_001165608.1| myosin 18a [Rattus norvegicus]
 gi|109491389|ref|XP_001080824.1| PREDICTED: similar to myosin XVIIIa isoform 1 [Rattus norvegicus]
          Length = 2054

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 36/349 (10%), Positives = 91/349 (26%), Gaps = 31/349 (8%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   +  +  D   F +      
Sbjct: 1461 RRFDSELSQAHEETQREKLQREKLQREKDMLLAEAFSLKQQMEEKDLDIAGFTQKVVSLE 1520

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1521 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGSIQMLEQAKLRLEMEME 1580

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + + ++    +L +    K K  ++    E+ L   
Sbjct: 1581 RMRQTHSKEMESRDEEVEEARQSCQKKLRQM-EVQLEEEYEDKQKALREKRELESKLSTL 1639

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1640 SDQVNQRDFESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQLKNQLEESEFT- 1698

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1699 ----CAAAVKARKAMEVEMEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1754

Query: 609  GE-----------------------AEKTAILISILHEVHIQIHQIESQ 634
                                       +         E+  ++  ++SQ
Sbjct: 1755 MNELMKKHKAAVAQASRDMAQMNDLQAQLEESNKEKQELQEKLQALQSQ 1803



 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 41/342 (11%), Positives = 101/342 (29%), Gaps = 39/342 (11%)

Query: 332  YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391
             K ++ +   ++    +    ++   D D          +      ++  VD   KR  +
Sbjct: 1337 KKQMEAMDMEVMEARLIRAAEINGEVDDDDAG-----GEWRLKYERAVREVDFTKKRLQQ 1391

Query: 392  NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK----------YIT 441
                    E+       +   +   D        Q ++ + Q+L  +             
Sbjct: 1392 ELEDKMEVEQQNRRQLERRLGDLQADSDESQRALQQLKKKCQRLTAELQDTKLHLEGQQV 1451

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI---- 497
             +    +  ++      Q     +  +    K +  K   L EA  L   +    +    
Sbjct: 1452 RNHELEKKQRRFDSELSQAHEETQREKLQREKLQREKDMLLAEAFSLKQQMEEKDLDIAG 1511

Query: 498  -------LQEQYQELADIRYDNNE-LQKLWSFLFSDFV-----EQKYFLPEEIHQRLCER 544
                   L+ + Q+++     +   L K+   L          E++        Q L + 
Sbjct: 1512 FTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGSIQMLEQA 1571

Query: 545  GFG-ELLKQLDRQVRDAGLWSATTEANIVD------VRQGYQQALALYKRFRLLSRQKEE 597
                E+  +  RQ     + S   E           +RQ   Q    Y+  +   R+K E
Sbjct: 1572 KLRLEMEMERMRQTHSKEMESRDEEVEEARQSCQKKLRQMEVQLEEEYEDKQKALREKRE 1631

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +E +++ ++ +           +  ++      +   + M++
Sbjct: 1632 LESKLSTLSDQVNQRDFESEKRLRKDLKRTKALLADAQIMLD 1673



 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1779 LQAQLEESNKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFEK 1835

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   ++ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1836 TQVKRLESMASRLKENMEKLTEERDQRAAAENREKEQNKRLQRQLRDTKEEMSELARKEA 1895


>gi|2546939|emb|CAA37311.1| muscle myosin heavy chain [Drosophila melanogaster]
          Length = 1201

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 811  DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 870

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 871  NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 923

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 924  EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 983

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 984  NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1043

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1044 KGGKKAIQKLEQRVRELENE 1063


>gi|15678515|ref|NP_275630.1| DNA helicase related protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621557|gb|AAB84993.1| DNA helicase related protein [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 1157

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 1/134 (0%)

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDR 555
           +     +  + I++ +   +K+ + + + +V +      E+ + L        L ++L+R
Sbjct: 406 LRDYLKESSSRIKFLSGRYRKIRNEIDALYVGRAPENDYEVVEDLENLMDVMSLREELER 465

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
               A  +  +         +  +       RFR L       E+ +  ++   + EK  
Sbjct: 466 YSGVAERFFGSMWNPENPPLEDLRATAEWIVRFRDLHSDGMISERTLECISRGLDGEKLL 525

Query: 616 ILISILHEVHIQIH 629
                + E++ ++ 
Sbjct: 526 SEFEEIMEIYNELE 539


>gi|322491824|emb|CBZ27097.1| hypothetical protein, unknown function [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 3925

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/295 (10%), Positives = 86/295 (29%), Gaps = 22/295 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                   +    +    +  +      R+ E          AE            +D ++
Sbjct: 2778 DVEMADLREQLREGEERARDVEAQQSDRDAEMADLREQLREAEERAMDVEAQQSDRDAEV 2837

Query: 421  RYYYSQ-AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 Q    +   +  +   ++        K+      ++  +   + ++L K      
Sbjct: 2838 ADLREQLREAEERARDVEAQQSDRDAEIERVKELLSGAMREAAASSEICTALEKQVEEAA 2897

Query: 480  PSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              +RE    L         L  +  EL        +L+ + S +       +        
Sbjct: 2898 LEIRELREQLAVTQVRREALDAECGELEQ------QLRDVQSSVLERREAVEDLSISHSA 2951

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----RFRLLSRQ 594
            +        E L++ + + RD     +  +A + D+R+  ++A    +    +      +
Sbjct: 2952 KDAEVADLREQLREAEERARDVEAQQSDRDAEMADLREQLREAEERARDVEAQQSDRDAE 3011

Query: 595  KEEIEKQIAQVTA-----KGEAEKTAILISILHEVHI-----QIHQIESQEAMIE 639
              ++ +Q+ +        + +       ++ L E        Q+ + E +   +E
Sbjct: 3012 MADLREQLREAEERARDVEAQQSDRDAEMADLREQLREAAEGQLREAEERARDVE 3066


>gi|313228401|emb|CBY23552.1| unnamed protein product [Oikopleura dioica]
          Length = 1931

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 79/239 (33%), Gaps = 25/239 (10%)

Query: 412  INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
                  + LR  Y + +  +     Q+ +++ +     W+        +   +       
Sbjct: 1339 SAKHDHELLREQYDEEVEAK--NELQRQLSKSNSESAQWRTKYETDAVQRTEELEDAKKK 1396

Query: 472  VKGKLSKKPSLREAALLLT--LINHPAILQEQYQELA-DIRYDNNELQKL--WSFLFSDF 526
            + G+LS+     EAAL     L      LQ + ++L  ++   N     L      F   
Sbjct: 1397 LSGRLSEAEESVEAALAKCSSLEKSKGRLQSEIEDLTVELERANAAAGALEKKQRSFDKI 1456

Query: 527  VEQKYFLPEEIHQRLCER----------------GFGELLKQLDRQVRDAGLWSATTEAN 570
            +E+     +EI+  L +                  + E +  L+   R+           
Sbjct: 1457 LEENKVKQDEINAELEKAQKDSREASNEVFKMRNAYEEAVDCLESSKRENKQVQEEIADL 1516

Query: 571  IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHEVHIQ 627
               V +G +    L K  R +  ++ E+   + +  A  + E  KT  +   L ++  +
Sbjct: 1517 TDQVAEGAKSISELEKAKRNIEVERNELAASLEETEAAVESEEAKTLRITVELQQIKNE 1575



 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 85/270 (31%), Gaps = 15/270 (5%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +     +   E    + L      + +           E   L+       + +K +  
Sbjct: 859  EYEEMKKELEVESKRRKQLEQEYSKFIQLKNRLISEFAGETDALQDAEDRYESLMKSKID 918

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                 + + +RL +  ++   + S   R  +   +   +         + + K K + + 
Sbjct: 919  LDGKIKELNERL-EDEEEINVDLSNKRRKLETECKELRKDIDDLEGTLAKVEKEKSTVES 977

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS--DFVEQKYFLPEEIH 538
             +R              L      +A ++ +   LQ+            E K     +  
Sbjct: 978  DVRTKT---------DELSALEDTIAKLQKEKKALQEAHQQALDDLQAEEDKVNSLSKAK 1028

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             +L ++   +L + ++ + R              D+R   +  + L    + L  + ++ 
Sbjct: 1029 NKLEQQ-VDDLEQSVETEKRSRLDLERLKRKLEGDLRLAQETIMDLENDKQRLEEKLKKA 1087

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            E +  Q++ + E E    L++ L +   ++
Sbjct: 1088 EFEYNQLSTRFEDE--QALVAQLQKKIKEL 1115


>gi|225012799|ref|ZP_03703233.1| ATP-dependent chaperone ClpB [Flavobacteria bacterium MS024-2A]
 gi|225003073|gb|EEG41049.1| ATP-dependent chaperone ClpB [Flavobacteria bacterium MS024-2A]
          Length = 905

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/209 (9%), Positives = 55/209 (26%), Gaps = 28/209 (13%)

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            +   I   +     +   + +   +        R     +    Q    K K       
Sbjct: 312 LFIDEIHTLVGAGGGEGAMDAANILKPALARGELRAIGATTLDEYQKYFEKDKA------ 365

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E      +++ P I                    +   +   +             R+ 
Sbjct: 366 LERRFQKVMVDEPDI---------------ESAISILRGIKDKYESHHKV-------RIK 403

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +      +   +R + +  L     +       +   +  +  +    L R+  +IE ++
Sbjct: 404 DEAIIGAVTLSNRYITNRFLPDKAIDLMDEAASKLRMEINSKPEELDTLDRKIRQIEIEL 463

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQI 631
             +  + E +K   L   L E+  + + +
Sbjct: 464 VAIRREKEEDKIKSLSKELGELKEKRNAL 492


>gi|168037644|ref|XP_001771313.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677402|gb|EDQ63873.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 623

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 65/190 (34%), Gaps = 11/190 (5%)

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL-ADIRYDNNELQ 516
           D        +++ +         +  E  +L        + ++  +EL  ++   + +L+
Sbjct: 68  DPVKVELNRLENEVRDKDRKLAEATAECKVLK---QRERLREKAVEELAEELDKVDEKLK 124

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
                L S  +E K    E+      +      L+++    +D  L S     + ++   
Sbjct: 125 AAEDLLESKNLELKKLNDEKKAALAAQFAAEATLRRVHAAQKDEQLPSIEEILSPLEAEL 184

Query: 577 GYQQALALYKR--FRLLSRQKEEIEKQIAQVTAKGEAEKTAI-----LISILHEVHIQIH 629
              +      +   R L R  +  E  + ++    +A +        L++   E+  QI 
Sbjct: 185 KIARQEIAKLQDTNRALDRLTKSKEAALLEIERAIDAAEAKASQVDDLLNRNQELMKQIE 244

Query: 630 QIESQEAMIE 639
             + +  +++
Sbjct: 245 ICQEENKIMD 254


>gi|159490922|ref|XP_001703422.1| hypothetical protein CHLREDRAFT_143829 [Chlamydomonas reinhardtii]
 gi|158280346|gb|EDP06104.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 2422

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 40/123 (32%), Gaps = 10/123 (8%)

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           + +     +    +    R  +    + +++L +          +            ++ 
Sbjct: 1   MVALRRHAEELTRQVRLARAKQETDAQAIQELQQDNARLRRLMESANEMSEAAAASLREL 60

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE-----SQEA 636
               +    L ++ E +  ++     +G   +   L ++L E  +Q+   +     SQ A
Sbjct: 61  GRSRRANEELQQEVERLTARV-----EGTDARVEQLRNLLREAELQLEAADQRTVRSQRA 115

Query: 637 MIE 639
            +E
Sbjct: 116 ALE 118


>gi|146304531|ref|YP_001191847.1| hypothetical protein Msed_1768 [Metallosphaera sedula DSM 5348]
 gi|145702781|gb|ABP95923.1| hypothetical protein Msed_1768 [Metallosphaera sedula DSM 5348]
          Length = 385

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 51/145 (35%), Gaps = 6/145 (4%)

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            +L  L   P   ++  +E+  I    +E Q++   L       +      + Q   ++ 
Sbjct: 17  EILRLLREDPDFRKQV-EEILGIDVIRSEYQEMRKTLAEIVASLRALTESSMAQAEAQKR 75

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             + + +L+ ++ +       T+  ++ +     +            R+ +E   ++   
Sbjct: 76  MADGMTKLEEKMAELAEAQRKTQEALLKLEDRTSKLEEKMAELAEAQRKTQEALLKLEDR 135

Query: 606 TAKGEAEKTAILISILHEVHIQIHQ 630
           T+K         ++ L E   ++ +
Sbjct: 136 TSK-----LEEKMAELVESQRRMQE 155


>gi|145479721|ref|XP_001425883.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392955|emb|CAK58485.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1068

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 56/140 (40%), Gaps = 2/140 (1%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           Q   QEL      N +L +  + L  +  + K    E++            +++L  Q++
Sbjct: 386 QRLQQELDQQHRQNEQLHQQNAELLKNLDKFKLLEEEKMQLENKVSMLAAEIERLKVQLK 445

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
                    +  +  +++   +   L K+   L RQ E+    I ++  K   +    L 
Sbjct: 446 QKNDKILQEQEELKRLQEQLNEIDELQKQNEDLIRQLEQANSTINELEKKL--QAITELE 503

Query: 619 SILHEVHIQIHQIESQEAMI 638
             L + + +I+ +E++ AM+
Sbjct: 504 QKLQDANNKIYDLENKVAML 523


>gi|22121649|gb|AAM88909.1| fast myosin heavy chain HCII [Gallus gallus]
          Length = 1943

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 74/225 (32%), Gaps = 23/225 (10%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GK 475
              LR  Y + +  +  +L +     +S   ++  K      Q+       +  L +    
Sbjct: 1349 DLLREQYEEELEAK-GELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQD 1407

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +     E  +         +  E    + D+   N     L         ++K    +
Sbjct: 1408 AEEHVEACECQMRFLEKTKQRLQNEVEDLMIDVERANAACAAL---------DKKQKNFD 1458

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +I     ++ + E   +L+   +++   S           +       L +  + L R+ 
Sbjct: 1459 KILAEWKQK-YEETQAELEASQKESRSLSTELFKMKNAYEESLDHLETLKRENKNLQREI 1517

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ-EAMIE 639
             ++ +QIA+             I  L +V  QI Q +S+ +A +E
Sbjct: 1518 SDLTEQIAEGGKA---------IHELEKVKKQIEQEKSEIQAALE 1553



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 83/273 (30%), Gaps = 28/273 (10%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-------RY 422
              +  +  +L   +    +       +      ELE   K     ++D +        + 
Sbjct: 1360 EAKGELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEACECQM 1419

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
             + +  + RLQ   +  + +            + +          +    + +   + S 
Sbjct: 1420 RFLEKTKQRLQNEVEDLMIDVERANAACAALDKKQKNFDKILAEWKQKYEETQAELEASQ 1479

Query: 483  RE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            +E  +L   L       +E    L  ++ +N  LQ+  S L     E             
Sbjct: 1480 KESRSLSTELFKMKNAYEESLDHLETLKRENKNLQREISDLTEQIAEGGK---------- 1529

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                    + +L++  +      +  +A + +     +       R   L  +  +++ +
Sbjct: 1530 -------AIHELEKVKKQIEQEKSEIQAALEEAEASLEHEEGKILR---LQLELNQVKSE 1579

Query: 602  IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            I +  A+ + E   +  + L  V      ++++
Sbjct: 1580 IDRKIAEKDEEIDQLKRNHLRIVESLQSSLDAE 1612



 Score = 37.6 bits (85), Expect = 6.2,   Method: Composition-based stats.
 Identities = 25/268 (9%), Positives = 81/268 (30%), Gaps = 17/268 (6%)

Query: 376  VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             +    +D     + E       +    +E    +    I+ +       + +   L ++
Sbjct: 1574 NQVKSEIDRKIAEKDEEIDQLKRNHLRIVESLQSSLDAEIRSRNEALRLKKKMEGDLNEM 1633

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK-LSKKPSLREAALLLTLINH 494
              +    +       K     +     +Q  +  +L   + L ++ ++ E          
Sbjct: 1634 EIQLSHANRVAAEAQKNLRNTQAVLKDTQIHLDDALRTQEDLKEQVAMVERRA------- 1686

Query: 495  PAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
              +LQ + +EL          +K+    L       +    +       ++     + Q+
Sbjct: 1687 -NLLQAEIEELRAALEQTERSRKVAEQELMDASERVQLLHTQNTSLINTKKKLETDIAQI 1745

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKG 609
              ++ D    +   E                 K+ +     L R K+ +++ +  +  + 
Sbjct: 1746 QSEMEDTIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLDQTVKDLQHRL 1805

Query: 610  EAEKTAIL---ISILHEVHIQIHQIESQ 634
            +  +   L      + ++  ++ ++E +
Sbjct: 1806 DEAEQLALKGGKKQIQKLEARVRELEGE 1833


>gi|17986479|ref|NP_539113.1| ATP-dependent Clp protease, ATP-binding subunit CLPB [Brucella
           melitensis bv. 1 str. 16M]
 gi|17982078|gb|AAL51377.1| ATP-dependent clp protease, ATP-binding subunit clpb [Brucella
           melitensis bv. 1 str. 16M]
          Length = 931

 Score = 42.2 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 80/211 (37%), Gaps = 32/211 (15%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++KY+ + +   R ++           +  +++    K +   K  + ++AL+   + 
Sbjct: 375 EEYRKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAAML 434

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +    +L   + S                       E+ +++
Sbjct: 435 SNRYITDRFLPDKAIDLVDEAASRLRMQVDS-----------------KPEELDEIDRRI 477

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            +   +       T+A   D             R + + ++  ++E++ A++TAK +AEK
Sbjct: 478 MQLKIEREALKVETDAASKD-------------RLQRIEKELSDLEEESAELTAKWQAEK 524

Query: 614 TAILISILHEVHIQIHQIESQEAMIEGFGKM 644
             + ++   ++  Q+ +  +  A+ +  G+ 
Sbjct: 525 QKLGLAA--DLKRQLEEARNALAIAQRNGEF 553


>gi|326925220|ref|XP_003208817.1| PREDICTED: WD repeat-containing protein 65-like [Meleagris
           gallopavo]
          Length = 1114

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 104/313 (33%), Gaps = 49/313 (15%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                 + +   L + +++ K   E R   +   +  L  + K     +  Q+++  Y +
Sbjct: 619 QAEKDNQEMQHQLQVSELMNKHAKEMRDLESDSNQKLLMENEKYQELQVNSQRMQEEYEK 678

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + + LQ+   + + E + Y            ++       Q    +    +     +  
Sbjct: 679 QLHN-LQESKNRALEELTDYYEEKLNEKSLLLEEAEEDMRQQLQAHEEIKKQMEEDEDRE 737

Query: 487 LLLTLINH-PAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           +    I +   +++E+   L    +I   N  L  L   L       +    EE+  +L 
Sbjct: 738 IQDIKIKYERWLIEEKESNLQLKGEIGVMNKRLNSLQKELKE-----RNSDIEEM--KLE 790

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR--------- 593
           ++    ++K L++ +    + +   E     +++  +    L  + + L +         
Sbjct: 791 QQNLEGVIKSLEKDIS---MLNTNIEKRTNTIQEKEKHIYDLKNKNQELEKFKFVLDHRL 847

Query: 594 ------------QKEEIEKQIAQVTAKGEAEKTAILISIL-------------HEVHIQI 628
                         + +++QI ++  + E          L              E+H + 
Sbjct: 848 EQFRKQIESRENDIKIMKEQIHEMERELEQLHKENTQLELNITQTQQKLKATDKELHKER 907

Query: 629 HQIESQEAMIEGF 641
            + ++ EA+I+ F
Sbjct: 908 QKKQNMEALIKRF 920


>gi|317419035|emb|CBN81073.1| TATA element modulatory factor [Dicentrarchus labrax]
          Length = 1136

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 19/181 (10%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           G  +   Q      KL+     +E  L     +   + ++     A +     EL +L  
Sbjct: 648 GKEEVEKQHRENIKKLNAVVERQEKELSRLQTDDEELQEKNRSLQAALDNSYKELAELHK 707

Query: 521 F-------LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
                        + +     E++   L +      ++Q     + A L  A   A    
Sbjct: 708 ANASRASVAEEAALSRDTHAKEQLSLALEKAQEEARIQQAALAEQVADLRLALQRAEQQQ 767

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            R           +   L  +  E+++++ +       E +  + S    +  QI  +++
Sbjct: 768 AR-----------KEDYLREEISELQQRLQEAE-TRNQELSQSVTSATRPLLRQIENLQA 815

Query: 634 Q 634
            
Sbjct: 816 S 816


>gi|168056812|ref|XP_001780412.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668172|gb|EDQ54785.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 496

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 73/194 (37%), Gaps = 9/194 (4%)

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
           +    Q    + L+ + + + +++ +    E +L   L     I+++Q +++ D++  + 
Sbjct: 241 SGAGQQARELKELISAQITQLQMAVEKMGNEFSLRQVLEEKDKIIEDQKKKIGDLQCAS- 299

Query: 514 ELQKLWSFLFSDFVEQKYFLPEE---IHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            +  L         ++      +   + + L E    E ++  ++   D    +      
Sbjct: 300 VMDALKYSRLEHQFKETQAEWAKENKLAKSLMELTKQECMELRNQYQEDKNKVAELEAKR 359

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-----AQVTAKGEAEKTAILISILHEVH 625
                  ++Q+ +       L ++  E+E ++      Q      +     L   +H + 
Sbjct: 360 SKLEDDFWRQSESSKMENEQLKKRIAELEAEMITVTTQQGEVNPASTSLWELEKQVHALE 419

Query: 626 IQIHQIESQEAMIE 639
            Q+ + ++Q A++E
Sbjct: 420 EQLKERDTQIALLE 433


>gi|305632844|ref|NP_001182222.1| myosin-1 [Macaca mulatta]
          Length = 1694

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1320 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHIRIVESMQSTLDAEIRSRNDAIRLKKKMEG 1379

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1380 DLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQLHLDDAL-----RTQEDLKEQ--LAM 1432

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1433 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1492

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1493 ISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1552

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1553 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1584


>gi|293340265|ref|XP_002724567.1| PREDICTED: similar to myosin XVIIIa isoform 2 [Rattus norvegicus]
 gi|149053479|gb|EDM05296.1| rCG33450, isoform CRA_a [Rattus norvegicus]
          Length = 2037

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 36/349 (10%), Positives = 91/349 (26%), Gaps = 31/349 (8%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   +  +  D   F +      
Sbjct: 1459 RRFDSELSQAHEETQREKLQREKLQREKDMLLAEAFSLKQQMEEKDLDIAGFTQKVVSLE 1518

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1519 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGSIQMLEQAKLRLEMEME 1578

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + + ++    +L +    K K  ++    E+ L   
Sbjct: 1579 RMRQTHSKEMESRDEEVEEARQSCQKKLRQM-EVQLEEEYEDKQKALREKRELESKLSTL 1637

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1638 SDQVNQRDFESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQLKNQLEESEFT- 1696

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1697 ----CAAAVKARKAMEVEMEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1752

Query: 609  GE-----------------------AEKTAILISILHEVHIQIHQIESQ 634
                                       +         E+  ++  ++SQ
Sbjct: 1753 MNELMKKHKAAVAQASRDMAQMNDLQAQLEESNKEKQELQEKLQALQSQ 1801



 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 41/342 (11%), Positives = 101/342 (29%), Gaps = 39/342 (11%)

Query: 332  YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391
             K ++ +   ++    +    ++   D D          +      ++  VD   KR  +
Sbjct: 1335 KKQMEAMDMEVMEARLIRAAEINGEVDDDDAG-----GEWRLKYERAVREVDFTKKRLQQ 1389

Query: 392  NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK----------YIT 441
                    E+       +   +   D        Q ++ + Q+L  +             
Sbjct: 1390 ELEDKMEVEQQNRRQLERRLGDLQADSDESQRALQQLKKKCQRLTAELQDTKLHLEGQQV 1449

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI---- 497
             +    +  ++      Q     +  +    K +  K   L EA  L   +    +    
Sbjct: 1450 RNHELEKKQRRFDSELSQAHEETQREKLQREKLQREKDMLLAEAFSLKQQMEEKDLDIAG 1509

Query: 498  -------LQEQYQELADIRYDNNE-LQKLWSFLFSDFV-----EQKYFLPEEIHQRLCER 544
                   L+ + Q+++     +   L K+   L          E++        Q L + 
Sbjct: 1510 FTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGSIQMLEQA 1569

Query: 545  GFG-ELLKQLDRQVRDAGLWSATTEANIVD------VRQGYQQALALYKRFRLLSRQKEE 597
                E+  +  RQ     + S   E           +RQ   Q    Y+  +   R+K E
Sbjct: 1570 KLRLEMEMERMRQTHSKEMESRDEEVEEARQSCQKKLRQMEVQLEEEYEDKQKALREKRE 1629

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +E +++ ++ +           +  ++      +   + M++
Sbjct: 1630 LESKLSTLSDQVNQRDFESEKRLRKDLKRTKALLADAQIMLD 1671



 Score = 37.6 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1777 LQAQLEESNKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFEK 1833

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   ++ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1834 TQVKRLESMASRLKENMEKLTEERDQRAAAENREKEQNKRLQRQLRDTKEEMSELARKEA 1893


>gi|154335920|ref|XP_001564196.1| kinesin [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134061230|emb|CAM38252.1| putative kinesin [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1097

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 96/310 (30%), Gaps = 22/310 (7%)

Query: 352 LLSRGEDPDSF----IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
            + + EDP       +R        +L           + R  E +      +  E E  
Sbjct: 553 WVKKNEDPQVVQLRELRAQVADLELRLKEAGGSNYTNEYVRGLEKKLHLAEKKCDEQERI 612

Query: 408 LKNC-----INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
           +           + D  L   Y      R ++  Q+   E +   +  K      + K  
Sbjct: 613 IAGLRAQLEFAGVADPTLAEGYLDP-TTRAKEDQQRAKKEENLRKQLDKAQMTVAELKAE 671

Query: 463 SQRLMQSSLVKG-KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD---NNELQKL 518
            +R + +   +  K  ++   ++ A L  +    ++         DI        E + L
Sbjct: 672 LERRVATIESESLKAMREALQKQEARLAVVATGVSLYHRVLPHFDDIDIVMALVREKETL 731

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQL--DRQVRDAGLWSATTEANIVDVR 575
                 D ++        + + L ER       K+L  ++    A  +    +    +  
Sbjct: 732 LQRACEDILDTNTESAAAVEKMLREREHDLRETKRLHEEKLAAQAERFCTRLKEASDENA 791

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-----Q 630
              QQ L  ++       ++ +  ++I+++  K   E    L   +     ++      +
Sbjct: 792 AQQQQLLDRHRDAIAQLEERLQRSREISEIELKRSEEAKEQLKQRMQVAQERMRHEYQQE 851

Query: 631 IESQEAMIEG 640
           IE   A ++G
Sbjct: 852 IERLRARLDG 861


>gi|145537942|ref|XP_001454682.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124422448|emb|CAK87285.1| unnamed protein product [Paramecium tetraurelia]
          Length = 538

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 77/245 (31%), Gaps = 17/245 (6%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           ++ ++       L   I  + D   +         R ++   +   E        +   R
Sbjct: 207 DSDEDGRITYSELLEAITFVPDYFQKERLIANELRRSRERITQLEKEREVLDDLQRSRER 266

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
             D +   +RL Q   ++    +   LR              L +  +    +     EL
Sbjct: 267 IDDLRRSRERLEQYQDLQKSRERLEDLR---------RSRERLDDLRRSRERLN-QLEEL 316

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           Q+    +      +K    +     L      E L  L R      L     E    +  
Sbjct: 317 QRSRQRIEQLEDLKKSRERQAQIDELRRS--RERLDDLRR--SRERLEQLEQERKNNEQL 372

Query: 576 QGYQQALALYKRFRLLSRQKEEI---EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +  +++ +  +  +   R+ E++   ++++  +    + ++       L+++     ++E
Sbjct: 373 EELRKSRSRIEELQKQRRRIEDLRTSQERLDALKRNRDEQELRRSQERLNDLKKSRERLE 432

Query: 633 SQEAM 637
             EA+
Sbjct: 433 QIEAL 437



 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 92/293 (31%), Gaps = 18/293 (6%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD F +        +   E +  ++   +   + +      +              ++  
Sbjct: 227 PDYFQKERLIANELRRSRERITQLEKEREVLDDLQRSRERIDDLRRSRERLEQYQDLQKS 286

Query: 419 KLRYYYSQAIRDRLQQL--FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ-SSLVKGK 475
           + R    +  R+RL  L   ++ + +     R  ++  +  D K   +R  Q   L + +
Sbjct: 287 RERLEDLRRSRERLDDLRRSRERLNQLEELQRSRQRIEQLEDLKKSRERQAQIDELRRSR 346

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                  R    L  L        EQ +EL   R    ELQK    +      Q+     
Sbjct: 347 ERLDDLRRSRERLEQLEQERKN-NEQLEELRKSRSRIEELQKQRRRIEDLRTSQERLD-- 403

Query: 536 EIHQRLCERGFGELLKQLD----RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
            + +   E+      ++L+     + R   + +              +Q+     + R+ 
Sbjct: 404 ALKRNRDEQELRRSQERLNDLKKSRERLEQIEALRQSREQQRALDELRQSRERLDQLRVS 463

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILIS-------ILHEVHIQIHQIESQEAM 637
             + +++E +   +    + E+                E+  Q+ + + + A+
Sbjct: 464 QNRIDQLENERKALQRSRQIEREIEYERQRSKDRLERLELEAQLER-QRERAL 515



 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 15/187 (8%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
             +RL+ + L + +       +E  +L  L      + +  +    +     +LQK    
Sbjct: 231 QKERLIANELRRSRERITQLEKEREVLDDLQRSRERIDDLRRSRERLE-QYQDLQKSRER 289

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L      ++             R   E L QL+   R         +      RQ     
Sbjct: 290 LEDLRRSRERLDDL--------RRSRERLNQLEELQRSRQRIEQLEDLKKSRERQAQIDE 341

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           L   +       + +++ +   ++    +  K    +  L +   +I +++ Q   IE  
Sbjct: 342 LRRSR------ERLDDLRRSRERLEQLEQERKNNEQLEELRKSRSRIEELQKQRRRIEDL 395

Query: 642 GKMSGRL 648
                RL
Sbjct: 396 RTSQERL 402



 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 85/250 (34%), Gaps = 7/250 (2%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R T +          +     +   N ++  + R    +  R+ L  L Q+         
Sbjct: 213 RITYSELLEAITFVPDYFQKERLIANELRRSRERITQLEKEREVLDDL-QRSRERIDDLR 271

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
           R  ++  +++D +   +RL      + +L      RE    L  +       EQ ++L  
Sbjct: 272 RSRERLEQYQDLQKSRERLEDLRRSRERLDDLRRSRERLNQLEELQRSRQRIEQLEDLKK 331

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR-QVRDAGLWSAT 566
            R    ++ +L      + ++      E + Q   ER   E L++L + + R   L    
Sbjct: 332 SRERQAQIDELRRS--RERLDDLRRSRERLEQLEQERKNNEQLEELRKSRSRIEELQKQR 389

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSR---QKEEIEKQIAQVTAKGEAEKTAILISILHE 623
                +   Q    AL   +  + L R   +  +++K   ++       ++      L E
Sbjct: 390 RRIEDLRTSQERLDALKRNRDEQELRRSQERLNDLKKSRERLEQIEALRQSREQQRALDE 449

Query: 624 VHIQIHQIES 633
           +     +++ 
Sbjct: 450 LRQSRERLDQ 459


>gi|117623632|ref|YP_852545.1| Rac prophage; tail protein [Escherichia coli APEC O1]
 gi|115512756|gb|ABJ00831.1| Rac prophage; predicted tail protein [Escherichia coli APEC O1]
 gi|284921265|emb|CBG34331.1| putative phage tail length tape measure protein [Escherichia coli
           042]
          Length = 1077

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 5/122 (4%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L + L +   +Q          ++    F    +++    R+    +           + 
Sbjct: 146 LAAALRNLEQQQDELNAAFASGKINGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQ 205

Query: 578 YQQALALYKRFRLLS---RQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIE 632
                 L  +   +     +  E +KQ+ +  AKG    E    L   L  +  ++   +
Sbjct: 206 VAALQRLIAQLDPVGTAFNRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEVTQ 265

Query: 633 SQ 634
           SQ
Sbjct: 266 SQ 267


>gi|157116237|ref|XP_001658396.1| lava lamp protein [Aedes aegypti]
 gi|108876565|gb|EAT40790.1| lava lamp protein [Aedes aegypti]
          Length = 3407

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 100/301 (33%), Gaps = 28/301 (9%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +       +    +   +S      L K E  +R+    + + ELE+        I++ +
Sbjct: 1044 EEIGELKREMEAAREAEKSSDEEPELLKVELNSRNDEIRELKKELELLGVKKAGEIEEAQ 1103

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             +   +    + L++L  +   +     +  +      +  G  + +        K++ +
Sbjct: 1104 AKLVAATKEIEILKELVAEQKQQLIETYQEHE-----NEIAGKLKEIQDYENQAQKMADQ 1158

Query: 480  PSLREAALLLTLINHPAILQEQYQEL--------ADIRYDNNELQKLWSFLFSDFVEQKY 531
                   L+     +   ++ Q +EL         +I +    +  L + +   +   + 
Sbjct: 1159 VEDLNRQLVEVGEKYSNDMKRQVEELKSLTQKQSDEIEHKQETIDTLNNQIIELYKTVED 1218

Query: 532  FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-------- 583
               + I +    +   ELL+    +++              D+R   ++ALA        
Sbjct: 1219 NANKIIEKEDEVQYLQELLESKKDEIQMLYEKLTVANKTAEDLRAKLEEALAKPVPVVDE 1278

Query: 584  -----LYKRFRLLSRQKEEIEKQIAQ--VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 L ++   L  + +E+ +++ +     K +  +   L   L  +  ++ ++    A
Sbjct: 1279 AQIKDLEQKNHDLDAKNKELLEKLKKFAANLKKKNVQCQELEGKLASLQQELEELRKSAA 1338

Query: 637  M 637
             
Sbjct: 1339 A 1339



 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/276 (10%), Positives = 88/276 (31%), Gaps = 17/276 (6%)

Query: 372  EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
            E++   +  +  +    E           +        + +   ++   R    + + D+
Sbjct: 1508 EEVCQGAEKMRKLEVDLEISEEENKKLKSKIVKLEQGISLVEERRNSLERQ--KKLLGDK 1565

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            L +  Q++I       +     ++H +      +  +  L++     +    +   L + 
Sbjct: 1566 LDEKQQEFIQHEDELMQRLANLSQHDEAVEGKLKEKEEELLELGSKLRDVEYQRDQLQSK 1625

Query: 492  INHPAILQEQYQELA--DIRYDNNEL------QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            +N        ++E +      +N           L + +     E +  + E+      +
Sbjct: 1626 LNQLEAQIGAFEESSKRASELENENYNLTQEVAALQAEVKRVLAESEAKVLEK--DSEID 1683

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ-- 601
            +   EL  QL +   +        E           + + L +    L +Q+ ++EK+  
Sbjct: 1684 QLEYELTNQLSKIEDERKQLQENLERTRDSNSDLQDEVVRLQENVNSLEQQRTDLEKETT 1743

Query: 602  ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               +   +   ++ +   L   + +   ++  + +Q
Sbjct: 1744 WLKMQNESLNHDSNELQELRMQIVQDQTELENLRAQ 1779


>gi|254588085|ref|NP_082002.1| discs large homolog 5 isoform 2 [Mus musculus]
          Length = 1898

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/331 (9%), Positives = 89/331 (26%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +        +     
Sbjct: 280 YDTAMDKLEVVKKDYDALRKRYSEKVAMHNSDLSRLEQLGEENQRLQKQTEMLTQQRDTA 339

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E           +          
Sbjct: 340 IQLQHQCALSLRRFETIH--HELSKATAQNKDLQWEMELLQSELTELRSKQVKTAKESEK 397

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
               +D      Y   + +R Q + +    +        K  +   ++K  S+ +     
Sbjct: 398 YKEERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAASEEMEALRQ 456

Query: 472 VK--GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +K    +    + +E  +L                         + + L   L     E 
Sbjct: 457 IKDTVTMDAGRANKEVEILR-----------------------KQCKALCQELKEALQEA 493

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 494 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 550

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+       +  +   L++ 
Sbjct: 551 DVSRELKELKEQME--CQLEKEARFRQLMAH 579


>gi|74188519|dbj|BAE28016.1| unnamed protein product [Mus musculus]
          Length = 1898

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/331 (9%), Positives = 89/331 (26%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +        +     
Sbjct: 280 YDTAMDKLEVVKKDYDALRKRYSEKVAMHNSDLSRLEQLGEENQRLQKQTEMLTQQRDTA 339

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E           +          
Sbjct: 340 IQLQHQCALSLRRFETIH--HELSKATAQNKDLQWEMELLQSELTELRSKQVKTAKESEK 397

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
               +D      Y   + +R Q + +    +        K  +   ++K  S+ +     
Sbjct: 398 YKEERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAASEEMEALRQ 456

Query: 472 VK--GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +K    +    + +E  +L                         + + L   L     E 
Sbjct: 457 IKDTVTMDAGRANKEVEILR-----------------------KQCKALCQELKEALQEA 493

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 494 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 550

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+       +  +   L++ 
Sbjct: 551 DVSRELKELKEQME--CQLEKEARFRQLMAH 579


>gi|326914998|ref|XP_003203809.1| PREDICTED: ribosome-binding protein 1-like [Meleagris gallopavo]
          Length = 997

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/255 (10%), Positives = 85/255 (33%), Gaps = 15/255 (5%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
             +E     +  +   LE  ++     ++    +  Y   +  +L+   Q   +E   Y 
Sbjct: 753 TLSEEELQKSQLQLKSLEDMIEKLKTELQSTDQQKEYISLLEAQLENHLQTASSERQNYT 812

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
           +  +   +   +        ++   K         ++ + + + +    +   Q      
Sbjct: 813 KEVEGLRQLLSESQEQLEAAKTETQKQSKELTLVRQQLSEMKSHVQDGEVAGSQADLGDP 872

Query: 508 IRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
             +      +L   L      +E++  L +++ + L E         L  ++    L   
Sbjct: 873 TPF------ELKMQLEKNEALMEKEQELRQKLVRELEEAQSSAC--SLQAELEKLRLAEN 924

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
              +++ +     Q      ++ + L+R   +   ++ ++      ++ A     + ++ 
Sbjct: 925 AATSDMEEA----QHLKERLEKEKKLTRDLGQAATKLQELLKVT-QDQLAKERETVKKLK 979

Query: 626 IQIHQIESQEAMIEG 640
            Q+H+   +++  EG
Sbjct: 980 EQLHEKGEEDSSKEG 994


>gi|322378532|ref|ZP_08052980.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Helicobacter
           suis HS1]
 gi|322379754|ref|ZP_08054064.1| ATP-dependent protease binding subunit (clpB) [Helicobacter suis
           HS5]
 gi|321147825|gb|EFX42415.1| ATP-dependent protease binding subunit (clpB) [Helicobacter suis
           HS5]
 gi|321149046|gb|EFX43498.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Helicobacter
           suis HS1]
          Length = 855

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 79/214 (36%), Gaps = 11/214 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KY  + S   R ++    +      + ++++      +     S+ ++AL+ +     
Sbjct: 317 YRKYFEKDSALTRRFQPIFVNEPSVNETLQILRGLKETLEAHHNVSINDSALVASAKLSS 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSD---------FVEQKYFLPEEIHQRLCERGF 546
             + +++     I   +     L   + S+          ++Q     + +       G 
Sbjct: 377 RYIPDRFLPDKAIDLIDEAAAALKMQIESEPFALSQTKRSIQQLEVEKQALLME-ESEGN 435

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA-QV 605
            E L  +++++  A       EA   + ++ ++           L R+ E  ++Q   + 
Sbjct: 436 KERLAVVEKELEHALEEKQRLEAQFSNEQKVFKDIAEAKNTIENLRRESEIAKQQADFRK 495

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            A+ + +K       +  +  Q+  ++ Q +++E
Sbjct: 496 AAEIDHDKIPTQEKEVQALEKQLSTMQEQGSLLE 529


>gi|228969095|ref|ZP_04130009.1| hypothetical protein bthur0004_58310 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|229073440|ref|ZP_04206576.1| hypothetical protein bcere0025_55580 [Bacillus cereus F65185]
 gi|228709747|gb|EEL61785.1| hypothetical protein bcere0025_55580 [Bacillus cereus F65185]
 gi|228790584|gb|EEM38271.1| hypothetical protein bthur0004_58310 [Bacillus thuringiensis
          serovar sotto str. T04001]
          Length = 358

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 30 RKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY--YCFSCHVKGDH 73
           K N        CCP H E  PSF  +     Y  +CF C   G  
Sbjct: 42 SKKNDNGNYIMCCCPNHTETRPSFGIS-KTPPYHTHCFCCGYLGTI 86


>gi|209155628|gb|ACI34046.1| Tripartite motif-containing protein 16 [Salmo salar]
          Length = 551

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%)

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
           F E  K+L    +       + +A + D  Q + + +   +R     ++    +++    
Sbjct: 213 FQEREKELKELQQAVKSLKRSAQAAVEDSDQIFTELIRSIERRSSEVKELIRAQEKAQVS 272

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQE 635
            A+G  E+    I+ L +   ++ Q+   E
Sbjct: 273 EAEGVLEQLKQEIAELRKRSTELEQLSHTE 302


>gi|149709374|ref|XP_001495041.1| PREDICTED: similar to guanylate binding protein 1 [Equus caballus]
          Length = 591

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/264 (8%), Positives = 78/264 (29%), Gaps = 10/264 (3%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDER---AELEIHLKNCINHIKDQKLRYYYSQAIR 429
             + +++   D    ++ +  +    +        E            +   + + + + 
Sbjct: 324 AAVQKAIAHYDQQMTQKVKLPTETLQELLDLHRASEKEAIEIFIKSSFKDEDHLFQKELA 383

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           ++L++    +  ++                    + + Q    K    +    +   L  
Sbjct: 384 NQLEKKRDDFCKQNMKASSDRCSALLRDLFSPLEEDVKQGIYSKPGGYRLLIQKTQELKE 443

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
             +  P    +  + L      + E   +   +            E   +R+        
Sbjct: 444 KYLQEPRKGIQAEETL-QTYLRSKE--SIIDAILQTDQTLTEKEKEIEVERVKAESAQAA 500

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI---AQVT 606
            K L+   +         E +  +  +   + +    R +LL+ Q+  +  ++   A++ 
Sbjct: 501 AKMLEEMQKKNQQMMEQKEKSYQEHVKQLTEKME-RDRAQLLAEQERTLALKLEEQARLL 559

Query: 607 AKGEAEKTAILISILHEVHIQIHQ 630
            +G   ++  L + +  +  ++ Q
Sbjct: 560 NEGFQNESRQLHNEIQNLQKRMAQ 583


>gi|141796054|gb|AAI34821.1| LOC100049148 protein [Xenopus laevis]
          Length = 831

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 119/357 (33%), Gaps = 41/357 (11%)

Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375
           R++     D+  ++   +  +L        +    + L   +      R       E+  
Sbjct: 3   RVLEMEGKDEEIIKTESRCKELQKKLHEEEHHSREIKLEVEK---LQKRMSELEKLEEAF 59

Query: 376 VESLP-LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQAIRDRLQ 433
            +S      +  K E E        +  E        +  ++ +  +  +  +    +L+
Sbjct: 60  TKSKSECSQLHAKLEREKSQTRDLLKEVEYVKTRVRELESVEGRLEKAEHNLKDDLTKLK 119

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
                 + E        K+     DQ   + ++ Q  +++         ++     + + 
Sbjct: 120 SFTVMLVDERKIMVAKLKQEEGKVDQLNRNLKVEQGKVMEVTEKLIDESKKLLKFKSEME 179

Query: 494 HP--AILQEQYQELADIRYDNNELQKLW---SFLFSDFVEQKYFLPEEIHQRL------- 541
                + +E+ + L+ +R + ++  +L      L       +    + +  RL       
Sbjct: 180 ENVYNLTKEKDESLSKLRTEEDKNAELRCRVDLLMKRLENMEVTEKDAVRNRLKKGFDQV 239

Query: 542 --CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----RFRLLSRQK 595
              +    E++ +++R  R+        E +++     Y Q    ++    R  +LS+Q 
Sbjct: 240 HQEDNKMKEMILEIERL-RNRLQRLEVVEGDLMKTEDEYDQLDRKFRTEKDRANVLSQQL 298

Query: 596 EEIEKQIAQVTAKG-----------------EAEKTAILISILHEVHIQIHQIESQE 635
           EE++ QIA+  A                   E  K+  L + +  +  +IH + ++E
Sbjct: 299 EELKNQIAKNKAIEKGEAVSQESELRHRIRVEESKSRDLRAEVQALKEKIHDMMNKE 355


>gi|109500227|ref|XP_001060717.1| PREDICTED: coiled-coil domain containing 18-like [Rattus norvegicus]
 gi|293352960|ref|XP_223734.5| PREDICTED: coiled-coil domain containing 18 [Rattus norvegicus]
          Length = 1462

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/253 (10%), Positives = 84/253 (33%), Gaps = 4/253 (1%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            R+ +       +E ++LE  + +     +++ +       I D+ +   +K         
Sbjct: 871  RQAKLEIDQYKEELSKLEKEITHLKRDGENKSIHLSQLDMILDQTKTELEKKTNSVKELE 930

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            R          +    +  +++ L       K +LR+   L  ++    +  E  ++   
Sbjct: 931  RLQHHTETELTETTQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTT 988

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            I+    EL++    +     E          +    +     +  LD  +R+        
Sbjct: 989  IKDLTAELRECKMEIEDKKQELLEMNQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1048

Query: 568  EANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
               +   + +   +     K+   L+ + +  ++Q+ +        +   +  +  E+  
Sbjct: 1049 IIKLEGTLEKSELELKECNKQAESLNEKLQNAKEQLREKEFIMLQNE-QEISQLKKEIER 1107

Query: 627  QIHQIESQEAMIE 639
               +++  E++++
Sbjct: 1108 TQQRMKEMESVMK 1120


>gi|109084645|ref|XP_001093961.1| PREDICTED: golgin subfamily A member 5 isoform 3 [Macaca mulatta]
          Length = 731

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 78/269 (28%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK----LRYYYSQAIRDRLQ 433
           +      + K   +            LE         I+DQ     L+    Q +++RL 
Sbjct: 296 AKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIIQDQSEGNSLQNQALQTLQERLH 355

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 356 EADATLKREQESYKQMQNEFA---------ARLNKVEMERQNLAEAITLAER-------K 399

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    +   +    ++     L+     L     +        E++   L E    E L 
Sbjct: 400 YSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLD 459

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 460 SSTANSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHD 519

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   IE
Sbjct: 520 QIAGQKASK--QELETELERLKQEFHYIE 546



 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 96/255 (37%), Gaps = 12/255 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSG 445
            E +       +   +++      +N +  +  R   ++A  + +R     +K + E   
Sbjct: 355 HEADATLKREQESYKQMQNEFAARLNKV--EMERQNLAEAITLAERKYSDEKKRVDELQQ 412

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             + +K N     Q+    +   + +++ K     SL+E +    L +  A   E  +  
Sbjct: 413 QVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSSTANSMELEELR 472

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +      E+QKL   +     E +    +++++        E L+ L  Q+        
Sbjct: 473 HEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEA---ESAREQLQDLHDQIAGQKASKQ 529

Query: 566 TTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             E  +  ++Q +      LY+    L  + ++ E++I ++  +   +  +       E+
Sbjct: 530 ELETELERLKQEFHYIEEDLYRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNSSQ--SEL 587

Query: 625 HIQIHQIESQEAMIE 639
             ++HQ+   E +I+
Sbjct: 588 ENRLHQL--TETLIQ 600


>gi|60097959|ref|NP_001012408.1| dystrophin [Sus scrofa]
 gi|75052798|sp|Q5GN48|DMD_PIG RecName: Full=Dystrophin
 gi|58416122|emb|CAI26302.1| dystrophin [Sus scrofa]
          Length = 3674

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 45/422 (10%), Positives = 118/422 (27%), Gaps = 20/422 (4%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +     ++      ++L N    LN + K   +
Sbjct: 2518 ELITAAQNLKNKTSNQEARTIITDRIERI----QSQWDEVQEHLQNRRQQLNEMLKDSTQ 2573

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGD 324
             +     +  +L +    + S  +              T+   + L +    + +  D  
Sbjct: 2574 WLEAKEEAEQVLGQARAKLESWKEGPYTMDAIQRKITETKQLAKDLRQWQINVDVANDLA 2633

Query: 325  DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK----------TAFEKL 374
               LR         +  +      ++  + +       +                 F   
Sbjct: 2634 LKLLRDYSADDTRKVHMITENINASWANIHKRLSERETVLEETHRLLQQFPLDLEKFLAW 2693

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
            + E+    ++L     + R         EL    ++    I+     Y+       ++ +
Sbjct: 2694 LTEAETTANVLQDATHKERLLEDSKGVRELMKQWQDLQGEIEAHTDIYHNLDENGQKILR 2753

Query: 435  LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-IN 493
              +          R    N +  + +  S  +           K+  L    LL+ L + 
Sbjct: 2754 SLEGSDDAILLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLK 2813

Query: 494  HPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-- 549
               + ++     +   ++  N+  +     L +          E +   L E+    L  
Sbjct: 2814 DDELSRQAPIGGDCPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLEK 2872

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            L Q  R++         T        +   +   L        R+ +E  +++ ++    
Sbjct: 2873 LYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDEALERLQELQEAT 2932

Query: 610  EA 611
            + 
Sbjct: 2933 DE 2934



 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 54/153 (35%), Gaps = 23/153 (15%)

Query: 505  LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAG 561
            L ++   N+++QKL   L ++  +      E+ ++ + E       ELL++ D   +   
Sbjct: 1776 LKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMSEDNEGTVKELLQRGDNLQQRIT 1835

Query: 562  LWSATTEANIVD--------------------VRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                  E  I                        +   Q     ++   L +  ++IEK+
Sbjct: 1836 DERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWYQYKRQADDLLKCLDDIEKK 1895

Query: 602  IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +A +    + +K   +   L +   ++  +  Q
Sbjct: 1896 LASLPEPQDEKKIKEIDRELQKKKEELDAVRRQ 1928


>gi|73949486|ref|XP_858785.1| PREDICTED: similar to transcription elongation regulator 1 isoform
           4 [Canis familiaris]
          Length = 993

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 592 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 651

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 652 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 699

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 700 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 748

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 749 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 808

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 809 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 861


>gi|239917286|ref|YP_002956844.1| bacterial peptide chain release factor 2 (bRF-2) [Micrococcus
           luteus NCTC 2665]
 gi|239838493|gb|ACS30290.1| bacterial peptide chain release factor 2 (bRF-2) [Micrococcus
           luteus NCTC 2665]
          Length = 373

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 2/83 (2%)

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           + +L++Q     LW    EA    V           KR   L  + E++E  +     + 
Sbjct: 33  IAELEQQASAPDLWDDPEEA--QKVTSKLSHRQTDLKRITSLESRIEDLETMVELAAEED 90

Query: 610 EAEKTAILISILHEVHIQIHQIE 632
           E          L  +   + ++E
Sbjct: 91  EPSLLDDANQELTSIRKALEELE 113


>gi|156543553|ref|XP_001603372.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 1788

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 55/582 (9%), Positives = 149/582 (25%), Gaps = 27/582 (4%)

Query: 79  ALLGCSFIESVQRLAAIAGVPLPV----VDPKIEKKEKIQTDLIRLIEVATDFFHHSLKN 134
                 + E++  L    G+         D  + +++  +  +  +          ++  
Sbjct: 289 ESENSRYEEAIIVLREKLGITEDEEFAMEDLIVRRQQAQEEKIEEIQRSCDQQASENVDL 348

Query: 135 ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDN 194
               R      +  + +       +    ++   L      K    E       +     
Sbjct: 349 KFQIRKLKTALKESLKNKLRRTNGISSDGENIEDLSHRSESKKDHVELKKMRENVKWVIE 408

Query: 195 SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGA 254
              +  +  + ++  I    G+ I        +              +H    L      
Sbjct: 409 ENEALRQGMHEILDCIHHQDGKSIVTIQSQTLENLLEALDARHLAGWYHPAMRLQGRVNY 468

Query: 255 LNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK-L 313
           L      +R  +++   + ++++E      S      +        +        L +  
Sbjct: 469 LQGSNAELRAQLQQIRKNQMMILEADSQQRSSSVEEGECSQQQTSASSKTDLQPALSQSR 528

Query: 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
           +       + D          +D +                   D + F +   +     
Sbjct: 529 NITPKSSENADSGRASGKPADMDEIQRVDDDDVDEPSGSCDTPLDDEGFGKKSEEVYAMA 588

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ------- 426
             + +          E E R      +   L  +L + ++     +LR  Y +       
Sbjct: 589 KEMVAQESDFKKALNEAETRQKILEAQVVGLRKNLASYVSPEAHAELRERYLEANMQLRA 648

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
           A   +     +  +           ++      K  S+  + S+       +     E  
Sbjct: 649 AFESKFGTNDEDSVEALRSKAVQELRDELVSLHKQLSELALSSARSNSTDGRAVGELEGR 708

Query: 487 LLLTLINHPAILQEQYQELADIRYDNN--------ELQKLWSFLFSDFVEQKYFLPEEIH 538
           L      +   L++  +        +         E   L   +    + +   + E   
Sbjct: 709 LAELKAEN-ERLKKAAEIAHQEALIHRAIDSSVLTEFNDLRQRILKFELNEDTEVKETAR 767

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV---RQGYQQALALYKRFRLLSRQK 595
                     ++ +L  Q +            + D+   R+   Q + L +R        
Sbjct: 768 LSFELANHKVIVTELREQKKLLERDLLKAREELADLSGGRESEGQVVELVRRPTDGRDYI 827

Query: 596 EE---IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           E    ++ Q A  T+    E+    ++ L+    ++ ++ SQ
Sbjct: 828 EIIDFLQHQYAGSTSLSAWERYEASLNKLNNDRNEVKELISQ 869



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 93/278 (33%), Gaps = 42/278 (15%)

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAEL---EIHLKNCINHIKDQKLRYYYSQAIRDRL 432
              L   D    +  EN  +   D        E +       I+D   R      ++ +L
Sbjct: 112 KNILDEKDTTIAKLKENLMYAASDRLTNASPDERNHAEIERLIQDIDRRDEIIAELQSKL 171

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
            +   +         ++   +      K  ++   +++      SK+ S  E+ L     
Sbjct: 172 SEAVVEINESSLLIEKFKSDSKTKDASKRATKGERETNKKMQDASKRISSLESLL----- 226

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                  E+ +  A ++      + L   + + + ++K  L   +          EL  Q
Sbjct: 227 -------ERAERDAKVK-SEQLCEAL--AILNKYEDEKTSLTNAL------EEIKELKDQ 270

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-----------RLLSRQKEEIEKQ 601
           L+++ R              +  +  +  + L ++             L+ R+++  E++
Sbjct: 271 LEKKNRHIEDLIDVVNRLESENSRYEEAIIVLREKLGITEDEEFAMEDLIVRRQQAQEEK 330

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           I ++    + + +  +     ++  QI ++++  A+ E
Sbjct: 331 IEEIQRSCDQQASENV-----DLKFQIRKLKT--ALKE 361


>gi|116008526|ref|NP_732108.2| myosin heavy chain-like, isoform A [Drosophila melanogaster]
 gi|113194785|gb|AAF55271.3| myosin heavy chain-like, isoform A [Drosophila melanogaster]
          Length = 2148

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 35/226 (15%)

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            L+ L ++    ++   +  +K          + R  + +  +    K     E   L   
Sbjct: 1577 LRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQT 1636

Query: 492  INHPAILQEQYQE--------LADIRY---DNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            +    +  E  +E        L ++ +      E  +L           +     E   +
Sbjct: 1637 LADTRLDLEFKEEKLASLQRELEEMTFGGGTEEEFAQLR----------RSKNETERRAK 1686

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LLSRQKEEIE 599
              E    E+  Q+    +       T E    + R+  QQ     +  R    ++ + +E
Sbjct: 1687 EQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALE 1746

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE--------SQEAM 637
             Q+     + E E+  +L+   HE+  ++  +E        ++EA+
Sbjct: 1747 CQL-----ETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEAL 1787



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/284 (8%), Positives = 76/284 (26%), Gaps = 21/284 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE--IHLKNCINHIKDQ 418
              +R   +   ++   E   +    +K+          +                 +   
Sbjct: 1714 ETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSM 1773

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            + R    +   + L Q  ++ + ++    +  +          P + L++   ++ +L  
Sbjct: 1774 EDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIR--QLRNQLED 1831

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              S R        +      +   +        +   +        +     +    E+ 
Sbjct: 1832 AESAR-----SLAMKARQTAE--AELTEVQAMFDESHRARNDA--EERANAAHRDRAELQ 1882

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             ++ E             ++             ++V +   +   +      L  Q  E+
Sbjct: 1883 AQIEENEEEL-----GELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAEL 1937

Query: 599  EKQIAQVTAKGEAEKTA---ILISILHEVHIQIHQIESQEAMIE 639
            + ++  V   G+         L     E+  ++   ++  A +E
Sbjct: 1938 QHRLDNVENLGDPSMAMMSKRLELRTKELESRLELEQATRARLE 1981


>gi|6683485|dbj|BAA89233.1| skeletal myosin heavy chain [Gallus gallus]
          Length = 1939

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 84/277 (30%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  +L   +    +       +      ELE   K     ++D +      
Sbjct: 1352 EEEQEAKGELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1411

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1412 NSKCASLEKTKQRLQNEVEDLMIDVERANSACAALDKKQKNFDKILSEWKQKYEETQAEL 1471

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+  S L     E         
Sbjct: 1472 EASQKESRSLSTELFKMKNAYEESLDHLETLKRENKNLQQEISDLTEQIAEGGK------ 1525

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +A++ +     +       R   L  +  +
Sbjct: 1526 -----------AIHELEKVKKQIEQEKSELQASLEEAEASLEHEEGKILR---LQLELNQ 1571

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1572 VKSEIDRKIAEKDEEIDQLKRNHLRIVESMQRTLDAE 1608



 Score = 37.2 bits (84), Expect = 8.3,   Method: Composition-based stats.
 Identities = 24/267 (8%), Positives = 80/267 (29%), Gaps = 15/267 (5%)

Query: 376  VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             +    +D     + E       +    +E   +     ++ +       + +   L ++
Sbjct: 1570 NQVKSEIDRKIAEKDEEIDQLKRNHLRIVESMQRTLDAEVRSRNEALRLKKKMEGDLNEM 1629

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
              +    +       K     +     +Q  +  +L       +  L+E   +  +    
Sbjct: 1630 EIQLNHANRMAAEAQKNLRNTQGVLKDTQIHLDDAL-----RSQEDLKEQ--VAMVERRA 1682

Query: 496  AILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             +LQ + +EL          +K+    L       +    +       ++     + Q+ 
Sbjct: 1683 NLLQAETEELRAALEQTERSRKVAEQELLDASERVQLLHTQNTSLINTKKKLESDISQIQ 1742

Query: 555  RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKGE 610
             ++ D    +   E                 K+ +     L R K+ +++ +  +  + +
Sbjct: 1743 SEMEDTIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLDQTVKDLQHRLD 1802

Query: 611  AEKTAIL---ISILHEVHIQIHQIESQ 634
              +   L      + ++  ++ ++E +
Sbjct: 1803 EAEQLALKGGKKQIQKLEARVRELEGE 1829


>gi|186684598|ref|YP_001867794.1| hypothetical protein Npun_F4484 [Nostoc punctiforme PCC 73102]
 gi|186467050|gb|ACC82851.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
          Length = 690

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/274 (10%), Positives = 87/274 (31%), Gaps = 18/274 (6%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-RYY 423
            +   A + L  +   + D   K+    +     +     +         IK++   +  
Sbjct: 190 RHLGDAKKTLENDLKAIGDSEIKQLLRQQEKIERERERITKRQT-----EIKEELEYQQT 244

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK--LSKKPS 481
           + +   +RL++L      +        +K A   + K   + L +    +G   L  + +
Sbjct: 245 FKKETSNRLRELSAAKELQERWQDLESQKAANQEEYKKTKEALKKVISARGYTVLLSETT 304

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            +   ++  L     +     +E  +   ++         +    + +       +   L
Sbjct: 305 SQFRGIINDLKQRGELTSGISREFVNDLLNSQRC------ICGAELHEGNHSHTHVSTWL 358

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            + G   + +   R +               +V +   +   L +    +    + I+++
Sbjct: 359 NKAGSSAVEETAIRMLAQVDEIDKQAIGFWEEVDREQTRINQLRQSISQIEGDLDNIQER 418

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           + +       E+ + L   L E+  +I ++  ++
Sbjct: 419 LRKDAN----EEISSLQKRLDEIESKIDELNREQ 448


>gi|301764907|ref|XP_002917869.1| PREDICTED: LOW QUALITY PROTEIN: myosin-14-like [Ailuropoda
            melanoleuca]
          Length = 1995

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 87/271 (32%), Gaps = 7/271 (2%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQAI 428
             + +L ++  PL+ +  + E          +  EL+      +  ++ +  +       +
Sbjct: 851  QWWRLFIKVKPLLQVTRQDEVLQARAQELQKVQELQQQSAREVGELQGRLAQLEEERTRL 910

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             ++L+   +         GR   +           +  +       +  +    R    +
Sbjct: 911  AEQLRAEAELCAEAEETRGRLAARKQELELVVAELEARVGEEEECSRQLQSDKKRLQQHI 970

Query: 489  LTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              L +H    +   Q+L   +      L+K    L     +      E          F 
Sbjct: 971  QELESHLEAEEGARQKLQLEKVTTEAKLKKFEEDLLLLEDQNAKLSKERKLLEERLAEFS 1030

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE----EIEKQIA 603
                + + +V+         EA I D+    ++     +    L R+ +    E+++Q+A
Sbjct: 1031 SQAAEEEEKVKSLNKLRLKYEATIADMEDRLRKEEKGRQELEKLKRRLDGESSELQEQMA 1090

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +   + E E  A L     E+   + ++E +
Sbjct: 1091 EQQQRRE-ELRAQLGRKEEELQAALARVEEE 1120


>gi|302412825|ref|XP_003004245.1| dynactin [Verticillium albo-atrum VaMs.102]
 gi|261356821|gb|EEY19249.1| dynactin [Verticillium albo-atrum VaMs.102]
          Length = 992

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 70/223 (31%), Gaps = 17/223 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +    RL+ L Q    E     +  + + +            +  L + + + +   ++
Sbjct: 422 LREALIRLRDLTQAQEAELRDQIKALESDLQDYSTVQEQFEASKEKLAQSESAVEDLRQQ 481

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              L   +    ++++  +    +  +  EL+ +   L +            +     E+
Sbjct: 482 ---LDNALGAEDMIEDLTERNMSMAEEIEELKAVIEDLENLKEINDELEINHVQN---EK 535

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE------EI 598
              E L   D  + +    +   E  + D+     +   L    +             E 
Sbjct: 536 EMQEELDFKDSVITEQARRAGQQEEALEDMEYTLSRFRELVTSLQGDLEDMRASHAVTEA 595

Query: 599 EKQIAQVTAKGEAEKTAILI-----SILHEVHIQIHQIESQEA 636
           E +     ++   +    L      + +  + +++ ++E+QEA
Sbjct: 596 ESEQLDSKSRAMMDLNMKLQISAAKTQVKTIDLELRRLEAQEA 638



 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 62/217 (28%), Gaps = 14/217 (6%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           +    E    GR     AR      P      ++  +     K  LR    L   I    
Sbjct: 277 RTNALERLTSGRTATTTARSPATASPRTAGGNTAAARENEDLKAKLRRMQELRKQIKEAE 336

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR--------LCERGFGE 548
              E  +++        EL  L   +  +  E      E + Q+           R   E
Sbjct: 337 TRFEAVEQMQAEHETALELATLDREMAEETAEVLKAELEALKQKSEELELEVEILREENE 396

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLSRQKEEIEKQIAQVTA 607
              Q       +       E     +R+   +   L + +   L  Q + +E  +   + 
Sbjct: 397 EFSQGMTPEERSSTGWLQMERTNERLREALIRLRDLTQAQEAELRDQIKALESDLQDYST 456

Query: 608 -----KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                +   EK A   S + ++  Q+      E MIE
Sbjct: 457 VQEQFEASKEKLAQSESAVEDLRQQLDNALGAEDMIE 493


>gi|226699027|sp|P23116|EIF3A_MOUSE RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Centrosomin; AltName:
           Full=Eukaryotic translation initiation factor 3 subunit
           10; AltName: Full=eIF-3-theta; AltName: Full=eIF3 p167;
           AltName: Full=eIF3 p180; AltName: Full=eIF3 p185;
           AltName: Full=p162
          Length = 1344

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    +R A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKAIEVIRPAHILQEKEEQHQLAVNAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|222100174|ref|YP_002534742.1| ATP-dependent Clp protease, ATPase subunit [Thermotoga neapolitana
           DSM 4359]
 gi|221572564|gb|ACM23376.1| ATP-dependent Clp protease, ATPase subunit [Thermotoga neapolitana
           DSM 4359]
          Length = 790

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 70/224 (31%), Gaps = 19/224 (8%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +     +RL++L  +   +      +  +             L  ++++K +L+      
Sbjct: 253 FRGDFEERLKRLLDELKRKKGEVILFIDEVHTVVGAGAAEGALDAANIMKPELTTG---- 308

Query: 484 EAALLLT--------LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           E  ++           I     L+ ++Q +        +  ++   L   F +       
Sbjct: 309 EIQIIGATTVEEYRKYIEKDRALERRFQPVLVEEPTVEQTVEILKGLRKVFEDHHKV--- 365

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
               ++ +       K   R + +  L     +           ++    +    L  + 
Sbjct: 366 ----KITDDALEAAAKLSARYITNRFLPDKAVDLIDEAASYVRLESSYPSEEILKLEEKM 421

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            E+E +I     KGE E+ A L   L ++  +  +    +  +E
Sbjct: 422 RELEDRINAAVVKGEYEEAAKLKVELQKLKEEYEKARKSQEKVE 465


>gi|39962871|gb|AAH64474.1| Cgn protein [Mus musculus]
          Length = 1223

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 64/169 (37%), Gaps = 9/169 (5%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKY 531
           K ++ ++  LRE  L          +    QE+  +R     + ++L   +     +   
Sbjct: 503 KQRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAA 562

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              E   ++       EL ++L+    + G W +  + N  ++R   Q+ L L      +
Sbjct: 563 LEAE---RQKMSSLVRELQRELEETSEETGHWQSMFQKNKEELRATKQELLQLRMEKEEM 619

Query: 592 SRQKEE----IEKQIAQVTAK-GEAEKTAILISILHEVHIQIHQIESQE 635
             +  E    +++ + Q  A   +  +   L   L     ++ ++++++
Sbjct: 620 EEELGEKMEVLQRDLEQARASTRDTHQVEELKKELRRTQGELKELQAEQ 668



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 99/291 (34%), Gaps = 25/291 (8%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y + A +++        D   + E  +   +   +  +            +D  
Sbjct: 893  QAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTA 952

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                  + +  RLQ L Q+   +        ++     ++    +  +       +L   
Sbjct: 953  RLD--KELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTD 1010

Query: 480  PSLREA----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDF 526
               R       L   L+   +  Q+   +   +   N +L+ +L S           S  
Sbjct: 1011 RVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQL 1070

Query: 527  VEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
              Q   L E +     E+       ++L+R+V++  +       ++ D +        L 
Sbjct: 1071 ESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQ------LT 1124

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
             R + L RQ +E E++I ++ +  +       +   HEV+ Q+  +I+S E
Sbjct: 1125 LRVKALKRQVDEAEEEIERLDSLRKKA--QRELEEQHEVNEQLQARIKSLE 1173


>gi|2546938|emb|CAA37310.1| muscle myosin heavy chain [Drosophila melanogaster]
          Length = 1201

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 811  DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 870

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 871  NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 923

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 924  EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 983

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 984  NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1043

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1044 KGGKKAIQKLEQRVRELENE 1063


>gi|162139823|ref|NP_001104727.1| prelamin-A/C [Sus scrofa]
 gi|85701138|sp|Q3ZD69|LMNA_PIG RecName: Full=Prelamin-A/C; Contains: RecName: Full=Lamin-A/C;
           Flags: Precursor
 gi|66352014|gb|AAY44741.1| lamin A [Sus scrofa]
          Length = 664

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------DLRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         + E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LADKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|25453232|sp|O61308|PUMA_PARUN RecName: Full=227 kDa spindle- and centromere-associated protein;
            AltName: Full=PUMA1
 gi|3068590|gb|AAC38995.1| PUMA1 [Parascaris univalens]
          Length = 1955

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 68/562 (12%), Positives = 158/562 (28%), Gaps = 25/562 (4%)

Query: 89   VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148
            V+RL       +       +++ +    L    +     +    K     +      E  
Sbjct: 1120 VERLKKK----IVQTTTITKEQNEKIEKLRIEHDHLERDYREKTKEVDRLKEVEKTFELK 1175

Query: 149  ID---SHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR 205
            ++       E  K     ++  +      QK   E ++++  L    D    + D   N 
Sbjct: 1176 VNRARQELDEFSKKLIVTETERNAISGEAQKLDKEVQLVKEQLQYKSDEFHKALDELANA 1235

Query: 206  LIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKD 265
                       +     R     +    L + E  L    +   N       L  ++R+ 
Sbjct: 1236 HRISEEGRVNAIHQLEARRFEIDDLKSRLENSEQRLATLQQEYVNADKERGALNDAMRRF 1295

Query: 266  VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDD 325
                S S  ++ E ++DV ++     + +           + R                 
Sbjct: 1296 QATISRS--VVAEEHVDVSTIETQMQKLMSRIEAIERERNEYRDSLNRLKNRCSTSYSSV 1353

Query: 326  PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDML 385
                  Y+  +  +       R   + LS  ++         K   E+       +V   
Sbjct: 1354 DRQETVYRTFEERVISAEDERRKVELKLSSMKEMLKSQEEKLKQRDEERRNLKSNIVTFE 1413

Query: 386  WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA------IRDRLQQLFQKY 439
             +   ++      ++  +         +   ++ LR    Q       +  RL     + 
Sbjct: 1414 LEARAKDAQIRHLNDLLKRVQAELE-NSQNDNRALRERQEQYETNRIHLEQRLPTDEGEP 1472

Query: 440  ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
              +        ++ +     K  + +L  S      L       +  LL        + +
Sbjct: 1473 RVKALMAAFATERQSLSDSLKKLASQLQISETKNADLRDDAERLKRDLLKAERVEEDLRR 1532

Query: 500  EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
               ++   +R    E Q+L S L     +          Q+L       +  +L    + 
Sbjct: 1533 NLVEQTEIMR----ENQQLRSQL--GVAQSDLANASGRKQQLEGE-LAAVRAELRDHKQH 1585

Query: 560  AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAIL 617
                 +        ++    +   L  R   L +    +     ++ A+    A++   L
Sbjct: 1586 LHDAISRIAELQRQLQDANAEKSRLTDRIIGLEKTIGTLRNTETELRAQLSTAADERKAL 1645

Query: 618  ISILHEVHIQIHQIESQEAMIE 639
             S L E+  +I Q+ES++  ++
Sbjct: 1646 NSELEEMRRRIVQMESEKKDVD 1667


>gi|1205976|gb|AAA90910.1| p162 protein [Mus musculus]
          Length = 1344

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    +R A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKAIEVIRPAHILQEKEEQHQLAVNAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|84500204|ref|ZP_00998470.1| hypothetical protein OB2597_09689 [Oceanicola batsensis HTCC2597]
 gi|84392138|gb|EAQ04406.1| hypothetical protein OB2597_09689 [Oceanicola batsensis HTCC2597]
          Length = 871

 Score = 42.2 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 70/223 (31%), Gaps = 28/223 (12%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y   +  R  + F           R    N  +  +     + +         S+   LR
Sbjct: 396 YETRLAAR--RFFDPLAAALVEQRRDLLWNRDNARRIVRVMKAISWQPEGLFRSQTAYLR 453

Query: 484 EAALLLTL---INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP------ 534
              L+  +     +  +  +Q   LA         Q LW    +  +E            
Sbjct: 454 MRVLMRRMDAITQYARLTDDQVDSLA---------QALWD--LALLIEDGDLEDARERLQ 502

Query: 535 ---EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ--QALALYKRFR 589
              E + + +      E + +L +++RDA       + +     +G Q  + L+  +   
Sbjct: 503 RAQERLSEAMKNGASDEEIARLMQELRDAT-QDYMRQLSREAAEEGEQMGEELSAEQMEN 561

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +   +++++  + ++    E  + A     L E+   +  + 
Sbjct: 562 AMRLSQDDLQAMMDRIQELMEQGRMAEAQQALEELQQMMENMR 604



 Score = 37.6 bits (85), Expect = 6.5,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
              +   + E          + RH     P  R      +   ++   +  +  L+  L 
Sbjct: 309 GDDYGVEMGEAEIALDLPAVDRRHGLASAPEPRDPIRLQMPLPIAGDRTAFDQELIENLS 368

Query: 493 NHPAI-------------------LQEQYQELADIRYDNNELQKL----WSFLFSDFVEQ 529
            HP                      +     LA  R+ +     L       L++    +
Sbjct: 369 EHPWANLPVTVTLRATDAAEQTGASEPYETRLAARRFFDPLAAALVEQRRDLLWNRDNAR 428

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-VDVRQGYQQAL---ALY 585
           +     +      E  F      L  +V    + + T  A +  D      QAL   AL 
Sbjct: 429 RIVRVMKAISWQPEGLFRSQTAYLRMRVLMRRMDAITQYARLTDDQVDSLAQALWDLALL 488

Query: 586 KRFRLLS---RQKEEIEKQIAQVTAKG-EAEKTAILISILHEVHIQIHQIESQEAMIEG 640
                L     + +  ++++++    G   E+ A L+  L +      +  S+EA  EG
Sbjct: 489 IEDGDLEDARERLQRAQERLSEAMKNGASDEEIARLMQELRDATQDYMRQLSREAAEEG 547


>gi|327306269|ref|XP_003237826.1| hypothetical protein TERG_02536 [Trichophyton rubrum CBS 118892]
 gi|326460824|gb|EGD86277.1| hypothetical protein TERG_02536 [Trichophyton rubrum CBS 118892]
          Length = 1610

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 78/233 (33%), Gaps = 13/233 (5%)

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
            +   +  KD       ++   +   +  +  I +        +   R +  +  SQ   
Sbjct: 642 AREERDMWKDILEAETAAREQSEEENKRLRNQILQLENDISSHEARYR-KGHQTFSQVGS 700

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
                +   +  P+  +  LL     + A+ +E   + + +   N E +KL+  +    +
Sbjct: 701 DYESSRSYATSNPTREDFELLRQ--ENNALRREVTAQTSMLTSRNREKEKLYQEIEDLKL 758

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           +++          + +R       +   Q  D        +       +   Q  AL   
Sbjct: 759 DRRNEGRSIAGDSIFDRSASRAQSRAMSQASD-----NDRDTLENRNGELRDQVSALKLD 813

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ----IHQIESQEA 636
            + L  Q +E   +++ V  + +AE    +   L ++  Q    +  IE +EA
Sbjct: 814 NQGLRSQLDEYANELSSVEREYQAE-LDRVSQELRDLQAQRDQALQAIEEREA 865


>gi|317180875|dbj|BAJ58661.1| ATPase [Helicobacter pylori F32]
          Length = 669

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/288 (9%), Positives = 90/288 (31%), Gaps = 17/288 (5%)

Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
                   + +    D    +    +   E+         + ++ R     S N  +   
Sbjct: 333 KHETIQKCIEIQPDTDIVDSVEYLAQNEVEEFATNVSKFTEAIFNRIDSKSSGNLKELEN 392

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
           ++  ++K     I   + +      + ++L+   ++     +    +  ++   + +K  
Sbjct: 393 QIIENIKKFDEQITYWQEKT----KLEEQLKNREKERKKSQNIIDTFTDEDYLDKREKLQ 448

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
             R     L + K      ++E   L  ++N      E  + + +    +    +L   +
Sbjct: 449 ENRKALIDLKQSKEGVLTFIKE---LKRVVNF-----ESKENMEEKNSYDKVYNQLKQNI 500

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +  E    +         +      +++L+ + +               + +      
Sbjct: 501 CKELEEIDKNIKNGCFDSDDKN-----IEKLEVKQQTLRQEIVEFLKEKGVIDENIGDLE 555

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               +   + R+  +++++I ++T K +      +   + E   QI++
Sbjct: 556 RANYQLVGIEREITDLKREIEEITNKIKGFSWESIDKDIEEFKDQINK 603


>gi|291398789|ref|XP_002715628.1| PREDICTED: hook homolog 1 [Oryctolagus cuniculus]
          Length = 728

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 36/343 (10%), Positives = 101/343 (29%), Gaps = 28/343 (8%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           DG                   +   +     L   +D         +    +    +   
Sbjct: 233 DGSFDDPNTMVAKKYFHAQLQLEQLQEENFRLEAAKDDYRVHCEELEKQLIEFQHRN--- 289

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
            ++    E      +  D             + ++  + +      +R +++ L +  + 
Sbjct: 290 DELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQKLQDLTDLRKQVKTLQETNMM 349

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPAI 497
                    ++  +    +   +   +            S R   L   +      H A+
Sbjct: 350 YMHNTVSLEEELKKANAARTQLETYKRQVQDLHNKLSSESKRADTLAFEMKRLEEKHEAL 409

Query: 498 LQEQYQELADIRYDNNELQKLW-----SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           L+E+ + +          ++L          +          E +   +    + E+  +
Sbjct: 410 LKEKERLIEQRDTLKETNEELRCSQMQQDHLNQTDASATKSYENLAAEIMPVEYREVFIR 469

Query: 553 LDRQVRDAGLWSA-TTEANIVDVRQGYQQALA-----------LYKRFRLLSRQKEEIEK 600
           L  + +   L    T    I ++++  +Q                +R R L +Q E+++K
Sbjct: 470 LQHENKMLRLQQEGTENERIEELQEQLEQKHRKMNELETEQRLSKERIRELQQQIEDLQK 529

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQEAMIE 639
            + +  +K E E ++ L   L     ++     +++ ++ +IE
Sbjct: 530 SLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQELIE 572


>gi|237831469|ref|XP_002365032.1| hypothetical protein TGME49_058080 [Toxoplasma gondii ME49]
 gi|211962696|gb|EEA97891.1| hypothetical protein TGME49_058080 [Toxoplasma gondii ME49]
 gi|221506803|gb|EEE32420.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 1711

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 92/291 (31%), Gaps = 25/291 (8%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              +    +   +          +M  +    +R     ++  +        I   +D  L
Sbjct: 1134 DAVNSEAREQRQLAQAAQAEKDEMEQEAHRLSRRMAQLEQSNKRLRADLQTIRSERDSLL 1193

Query: 421  RYYYSQAIRDRLQQLF--QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                 +A+  +  +L      + E        ++      Q+  + +  + SL       
Sbjct: 1194 ANN--EALSKKTSRLQTQASRMNEAETQLEELREENGSLQQQLQAAQSERQSLQNDLEGV 1251

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE---------- 528
               LREA L         IL++  + L   R  N+EL  + S L S   E          
Sbjct: 1252 HCQLREAQL-----REEEILRKHAEALEKSR-SNSELLSVNSQLQSQLEERSTQLLESEK 1305

Query: 529  QKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
            +      E+   + E  +   EL  +L           A  E      R+   +     +
Sbjct: 1306 RSEEKEAELQSEIAELKKKVEELETELATSTSPLLSRLAAAEQQAACAREEGARLSVEIR 1365

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            +   +  + E+I  + A+   +  + +     +   E+  Q+  ++ +E++
Sbjct: 1366 KR--MEAEIEDIRGRAAE-EKRLLSNEIDRKHAEASELRRQLETLKLEESV 1413


>gi|183979376|dbj|BAG30740.1| muscle myosin heavy chain [Papilio xuthus]
          Length = 1965

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 75/261 (28%), Gaps = 22/261 (8%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 1576 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1635

Query: 443  HSGYGRYWKKNARHRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q       L +    +    ++  + E           A+  E 
Sbjct: 1636 NKANAEAQKNIKRYQQQIKDLQTALEEEQRARDDAREQLGISER-------RANALQNEL 1688

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE---------EIHQRLCE--RGFGELL 550
             +    +   +   ++    L     +      +         ++   L        ELL
Sbjct: 1689 EESRTLLEQADRARRQAEQELGDAHEQLNELSAQSASLSAAKRKLESELQTLHSDLDELL 1748

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
             +       A            ++R   + A    K  + L +Q +E++ ++ +  A   
Sbjct: 1749 NEAKNSEEKAKKAMVDAARLADELRAEQEHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1808

Query: 608  KGEAEKTAILISILHEVHIQI 628
            KG  +    L   + E+  ++
Sbjct: 1809 KGGKKAIQKLEQRVRELENEL 1829


>gi|167761133|ref|ZP_02433260.1| hypothetical protein CLOSCI_03531 [Clostridium scindens ATCC 35704]
 gi|167661252|gb|EDS05382.1| hypothetical protein CLOSCI_03531 [Clostridium scindens ATCC 35704]
          Length = 890

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 46/398 (11%), Positives = 115/398 (28%), Gaps = 34/398 (8%)

Query: 255 LNYLQKSIRKDVRRNSSSFIILVEGYMDVL-------SLCQAGVQNVVSSLGTALTEYQL 307
              + K        +  + +    G    +       +  + G+  + +S G      + 
Sbjct: 350 REAIIKKHWIKGIISLPANLFYGTGIAACVLVIDKEGAANRQGIFMIDASRGYVKDGNKN 409

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF--IRC 365
           RL  +   RI+  F+          + +            +N        DP+    I  
Sbjct: 410 RLRERDIYRIITTFNEQITTDPKYARFVPNDEIEKKNEYNLNITRYIDSTDPEDIQDIYA 469

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
           +       + + SL     ++            ++   L +  +N    I        Y 
Sbjct: 470 HIHGGIPAVDINSLSKYWDVFPSLKTELLTAISEKYYSLNVEHENIRQTIYKNAEFSEYG 529

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
               ++L   F ++ T+         ++   ++        + +      L  K  + + 
Sbjct: 530 ----EKLDDAFAEWKTKEYPALSTLDEDVSAKELIVSLAEDILAEFEHLTLIDKYDVYQV 585

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNE---LQKLWSFLFSDFVEQ---KYFLPEEIHQ 539
            L            E   +   +     +     +    +  +                 
Sbjct: 586 LLAY--------WNEVMNDDVSLIISEPDGYANARATDNIEEEITSGKKKGEMKITGWEG 637

Query: 540 RLCERGF--GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           RL  +        ++    + +A   +  TE+ ++D+ +   +  AL         + ++
Sbjct: 638 RLIPKNIVIDAFFREEKNAIEEAENVATETESQLLDLIESADEESALADVAENGKVKVKD 697

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEV-----HIQIHQ 630
           IE +IA++T   E E+T  L  IL ++       ++  
Sbjct: 698 IEAKIAELTQHVETEETIELEVILMDLHLVNTKKRLEA 735


>gi|114595515|ref|XP_001170168.1| PREDICTED: centromere protein E isoform 1 [Pan troglodytes]
 gi|114595517|ref|XP_001170275.1| PREDICTED: centromere-associated protein E isoform 2 [Pan
            troglodytes]
          Length = 2701

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 73/214 (34%), Gaps = 16/214 (7%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
              I +  + L                   +    K       +      +L K+   +  
Sbjct: 1802 DKISNMQKDLENSNAKLQEKIQELKANEHQLFKLKKDVNETQKKVSEMEQLKKQIKDQSL 1861

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L    + +  + Q+ ++ L +++    E   L         E      +++ + L E  
Sbjct: 1862 TLSKLEMENLNLAQKLHENLEEMKSVMKERDNLRR-----VEETLKLERDQLKESLQETK 1916

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSRQKEEIEKQIAQ 604
              +L  ++ ++++ A + S   +     +R+   +  + +    + L + K+E++K+I +
Sbjct: 1917 ARDL--EIQQELKTARMLSKEHKETADKLREKISEKTIQISDIQKDLDKSKDELQKKIQE 1974

Query: 605  VTA--------KGEAEKTAILISILHEVHIQIHQ 630
            +          K +   +   I+ + ++  Q   
Sbjct: 1975 LQKKELQLLRVKEDVNMSHKKINEMEQLKKQFEA 2008


>gi|119195031|ref|XP_001248119.1| hypothetical protein CIMG_01890 [Coccidioides immitis RS]
          Length = 1243

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 93/320 (29%), Gaps = 17/320 (5%)

Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375
           R V   + D    +      +L           N       E  +              +
Sbjct: 509 RDVARKERDSASSQLCEIEDELRSRGDDKNLLQNRHDALTHESQELQRDLERARDNIADL 568

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            + +      +    E+      DE   L+  +++    ++D + ++   +   + +++ 
Sbjct: 569 EQQISDEKQRYFEAIEDLRLRHRDEIDLLQDDIESLKRKLEDSEAQFNVDRDKWESVKRT 628

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-KLSKKPSLREAALLLTLINH 494
                 +       +K+      Q   S    +  L       K+  L+E  LL   I  
Sbjct: 629 LDLQKHQAEQQASGYKRTVERLQQTESSLSGKEKRLQDAIDSEKQLHLQEKELLNCQIK- 687

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             +  +       I     EL  L   L     E +    EE  + L +         + 
Sbjct: 688 -DLTDDIASRRQTIESQRTELLSLKEELRVAKREGEMM--EEKIRNLEDEA-------II 737

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            +           +     V +  +Q     +  + L  Q  + E +++++ A       
Sbjct: 738 LKASLEQEMQFGEDKRRNGVSELEKQLQNSLREKQTLRDQVAKAEAELSELRAA-----L 792

Query: 615 AILISILHEVHIQIHQIESQ 634
             + +   E+  Q+++  +Q
Sbjct: 793 PDIEADRDELKSQLNRFHNQ 812


>gi|37595847|ref|NP_932226.1| putative conjugative transfer protein TraI [Vibrio vulnificus YJ016]
 gi|37201930|dbj|BAC97749.1| putative conjugative transfer protein TraI [Vibrio vulnificus YJ016]
          Length = 1924

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/352 (9%), Positives = 93/352 (26%), Gaps = 24/352 (6%)

Query: 59   KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
            +G++  ++   KG  ++ + +  G S+ E++      A   L   +    ++      L 
Sbjct: 1585 RGYFKDYTTGEKGSLINLMMSHNGMSYKEAM----NEAHKMLNEPEKYKLEENSKHEKL- 1639

Query: 119  RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178
                         L         +    +   S +  +               ++     
Sbjct: 1640 -------------LSTTPKHIAKFEERAKEYISQSQPINNTLAQTYLNSLGINNIENDNV 1686

Query: 179  SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238
                 + +        +  +    +      I  +          TL          S +
Sbjct: 1687 KFHPSVYSSEDKAYHPAMLTNIHNKQGETKAIEVTYLDSQGNRDNTLDINPRTLGTKSKQ 1746

Query: 239  TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298
               FH+G+NL N       ++ S     +      II V    D+ ++    ++  +  +
Sbjct: 1747 LTNFHQGENL-NTTIISTSIENSFLIREQTQGQIDIINVNHKNDIQNINIDELRQNIIIV 1805

Query: 299  GTALTEY-----QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
                          +++   + R +     D+           L   + +    ++    
Sbjct: 1806 LNQGNHDLNPNNIEKIIENFNGRDIQFMSDDNLKEDIKACIEKLERDNSVHDIELSETHS 1865

Query: 354  SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
            +  E     +    K   +   +E     +   ++E          +  + E
Sbjct: 1866 THQESGLDTLNFDEKKETDSQSLEHFEPKEYSPQQEMNFEHQEKESDWEDRE 1917


>gi|326470448|gb|EGD94457.1| nuclear condensin complex subunit Smc4 [Trichophyton tonsurans CBS
            112818]
          Length = 1431

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 84/234 (35%), Gaps = 24/234 (10%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + +   L+          +   +   +    +     +QR ++    + K S     REA
Sbjct: 938  RELETELKTTKDAIPKVETAIQKLQLEIDSAKRNLADTQRRVKELSEEHKPSAADEKREA 997

Query: 486  ALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFV---EQKYFLPEEIHQR- 540
            +L  T+      L+++ ++L +++     E+Q L   +          +    + + ++ 
Sbjct: 998  SLEKTI----KALEKEIEKLRSEMTGVEEEIQALQDKIMEVGGVRLRGQKAKVDGLKEQI 1053

Query: 541  --LCERGFGELLKQLDRQVRDAGLWSATTEAN------IVDVRQGYQQALALYKRFRLLS 592
              L +      + +   +        +  +A         D+ +  ++A    K    + 
Sbjct: 1054 SLLTDEVSNAEVSKSKNEKLRVKHEKSRADAEAELESVQEDIEKLNEEAKNQAKAVSGIK 1113

Query: 593  RQKEEIEKQIAQVTAK-----GEAEKTAILISILHEVHIQIHQ--IESQEAMIE 639
            ++ EE E+ +     +      E ++    ++    V I++     ESQ+A++E
Sbjct: 1114 QKTEEAEEALQTKQEELTALKTELDEKTAELNETRAVEIEMRNKLEESQKALVE 1167


>gi|324994822|gb|EGC26735.1| cell division protein Smc [Streptococcus sanguinis SK678]
          Length = 1178

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 45/373 (12%), Positives = 108/373 (28%), Gaps = 59/373 (15%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             I    D +        +  D+    +  G   +   +      +       +      
Sbjct: 102 RHIYRSGDSEYKIDGKKVRLRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIF 161

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK---------------DQK 419
              +  L     ++ETE++   T D    LE  +    + +K               D +
Sbjct: 162 EEAAGVLKYKTRRKETESKLSQTQDNLDRLEDIIYELESQVKPLEKQVETAKRFLSLDGQ 221

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y   +  +L    +K I          ++ A +  ++   +   Q+   K     +
Sbjct: 222 RRELYLDVLVAQLTANKEKLIKAEEDLTNIQQELAAYYGKRDELEVENQTLKAKRHELNQ 281

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDN-----------NELQKLWSFL--FSDF 526
               +     +L+    ++ +  +++   + ++             L  L   L      
Sbjct: 282 TLSDDQ---ASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLAQIESN 338

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           +E K     +I  +L +       + +     +   +S   +  I  +R+   Q + L +
Sbjct: 339 IEDKQAELSKIAAKLSDNE-----ESIAALEAELADFSDDPDQLIEHLRE---QYVKLMQ 390

Query: 587 RFRLLSRQKEEIEKQIA--------------------QVTAKGEAEKTAILISILHEVHI 626
               LS     +E Q+A                    + +   E      L      +  
Sbjct: 391 EEANLSNDLTSLESQLASELKLAESKKADYAKLQADLEASQTQEQAGLEELEIARQALKN 450

Query: 627 QIHQIESQEAMIE 639
            ++  +SQ  ++E
Sbjct: 451 LLNDYQSQIQLVE 463



 Score = 37.2 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 97/285 (34%), Gaps = 18/285 (6%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             +  +  ++V  L        +  E+ +    +  A      +  + +   +  R+  +
Sbjct: 221 QRRELYLDVLVAQLTANKEKLIKAEEDLTNIQQELAAYYGKRDELEVENQTLKAKRHELN 280

Query: 426 QAIRDRLQQLFQKYIT----EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Q + D    L +        E        + +     ++   +RL   S    ++     
Sbjct: 281 QTLSDDQASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLAQIESNIE 340

Query: 482 LREAALLLTLINHPAILQEQYQELADI-----RYDNNELQKLWSFLFSDFVE--QKYFLP 534
            ++A L          L +  + +A +      + ++   +L   L   +V+  Q+    
Sbjct: 341 DKQAELSKIAAK----LSDNEESIAALEAELADFSDDP-DQLIEHLREQYVKLMQEEANL 395

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                 L  +     LK  + +  D     A  EA+    + G ++     +  + L   
Sbjct: 396 SNDLTSLESQ-LASELKLAESKKADYAKLQADLEASQTQEQAGLEELEIARQALKNLLND 454

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +   + + ++ A  + ++T  +  +L ++  +  +  S EA+++
Sbjct: 455 YQSQIQLVEKLEADYKHQQT-KMFELLDDLKNKQARSNSLEAILK 498


>gi|293341590|ref|XP_002724987.1| PREDICTED: CDNA sequence BC057170-like [Rattus norvegicus]
          Length = 598

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 72/233 (30%), Gaps = 20/233 (8%)

Query: 422 YYYSQAIRDRLQQLFQKYITEH------SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +YS+ +  RL+                             +D+     + +   + + K
Sbjct: 325 DHYSEQMAQRLRLPTDTLQELLDEHTACEKEAISVFMEHSFKDENQLFLKKLVKLIGEKK 384

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   EA+          + ++  + ++   +      +L+  +        + +P 
Sbjct: 385 GLFVLKNEEASDKYCQEELDRLSKDFMENIS--TFSVPGGHRLYVDMREKIERDYWQVPR 442

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +  +      F   L+     +  + L + T            +      ++ + L RQK
Sbjct: 443 KGVKA--SEVFQSFLQS-QVIIESSILQADTALTAGEKAIAEERTQREAAEKEQELLRQK 499

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQI---------HQIESQEAMIE 639
           +  ++Q+ +   K   E    L   L +   Q+          Q++ Q+A +E
Sbjct: 500 QREQQQLMEAQEKSNKENLEQLREKLVQERKQLIEEHNMMLEKQLKDQKAYLE 552


>gi|289614125|emb|CBI61494.1| unnamed protein product [Sordaria macrospora]
          Length = 1366

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 74/227 (32%), Gaps = 25/227 (11%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +    RL+ + Q+   E     +  +++ R  +     Q       +    +    LRE
Sbjct: 483 LREALIRLRDITQQQEEELRDQIKSMEEDLREFETI-KEQHTTAKEKLGQTEAIVEDLRE 541

Query: 485 AALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
                  +N+    +E  + L +   + + E+++L   +  D    K    E     +  
Sbjct: 542 Q------LNNALGAEEIIESLTEQTMNQSEEIKELR-AVIDDLESLKEINDELEINHVQN 594

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK--Q 601
               E+ +++D +                 +           +    L    E++     
Sbjct: 595 E--KEMQEEIDLKDAVIAEQFRQANLQRESLEDMEYTLSRFRELVTSLQSDLEDMRASHA 652

Query: 602 IAQVTAKGEAEKTAILI------------SILHEVHIQIHQIESQEA 636
           + +  ++    ++  ++            + +  + +++ ++E+QEA
Sbjct: 653 VTENESEQLNSRSRAMLDLNMKLQISASKAQVKTIDLELRRMEAQEA 699


>gi|270008712|gb|EFA05160.1| hypothetical protein TcasGA2_TC015279 [Tribolium castaneum]
          Length = 661

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/274 (11%), Positives = 89/274 (32%), Gaps = 11/274 (4%)

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
           +++    ++  ++   +R  +    +        +   K   +  ++ + +       + 
Sbjct: 78  YKQRYERAVRELEFTKRRLQQQHEDDLEQLVGLKKQLEKKLTDAYEEVEEQRQVVGQWKR 137

Query: 431 RLQQLFQKYITEHSGYGRYWKKNA---RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           ++Q+L  +             +N    + + +     + +Q  L K + +K    RE  +
Sbjct: 138 KVQKLNGEMNDLRLLLEEQSARNNLLEKKQRKFDSETQQLQEELKKERQTKDRLAREKEV 197

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL------PEEIHQRL 541
           +  +    AI         ++   + +L  L   +       K          ++I    
Sbjct: 198 I--MAEKYAIESSLADTRLELELKDEKLSSLQREMDEITCSGKTEEEVTQLRRQKIDCER 255

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                 E L +L  QV+         E ++  +R+  ++   +        R   + + +
Sbjct: 256 RLADQEEELDELAGQVQLLEQAKLRLEMSLESMRKEAKKEAQMRDDELEEIRCNAQKKVK 315

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             +   + E E+   L+   HE+  ++      E
Sbjct: 316 ALEAHLENEHEERTQLLREKHELERRLAAAAESE 349


>gi|239607841|gb|EEQ84828.1| RNA polymerase Rpb1 C-terminal repeat domain-containing protein
           [Ajellomyces dermatitidis ER-3]
          Length = 1439

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 41/400 (10%), Positives = 115/400 (28%), Gaps = 36/400 (9%)

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+    +    + L +   +   ++         N  S            +       + 
Sbjct: 287 NNTNKEIEDPPQPLRHPSPSAAEIRLPSPSPSELNPRSNP---------AAAHHYLHGHP 337

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
            + + +    Y   ++      ++   +G      AA         +  P   +    + 
Sbjct: 338 PAPISSPHYSYGSPVVHPYVHPMIPPHNGASFDPHAASNMAVTAPSYHTP---MRSSTMD 394

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
               P    R   +T++ +   ++    D    RE         +               
Sbjct: 395 SPYSPYHHARRSSRTSYGRGYADTYYNNDYGPVREPAPVQPPVIENGKSASNG------- 447

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                     + ++  R+Q +          Y     + +    +    +   + SL++ 
Sbjct: 448 -------EGLNISLLSRIQSIIPDIGQLVISYRDQQTQLSAREAEHKQIEAQHEESLMRK 500

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +        +A +  T         +    ++++R +   LQ+    +     + +    
Sbjct: 501 EYY--IEALQAQMQKTANESAKECSKLKSRISELRLELGGLQEKQKDIEESLADAQKEND 558

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E    +L E    +L + +D   R         E  +   R+  ++AL   K+   L   
Sbjct: 559 E--LSQLRE----DLQEDIDNLQRAIEDEKEAHEEELAKQREQEKEALVNQKQE--LEGY 610

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +EI+ +  ++ A+    +   L     ++  ++   + +
Sbjct: 611 FQEIKNEDDRLAAEQLKAREQELTVERDKLKAELETEKQE 650


>gi|239629253|ref|ZP_04672284.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239528458|gb|EEQ67459.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 456

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 15/119 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
              +  I     ++ I  +     +       +   G +      HD    S   ND K 
Sbjct: 8   RLSKATIDQA-NNVSIVAIAEANGIAL----VHQSNGYWRGV--EHD----SLVINDKKN 56

Query: 61  FYYCFSCHVKGDHLSFLSALLGC-SFIESVQRL--AAIAGVPLPVVDPKIEKKEKIQTD 116
            +   S  V G  L F+   +G  SF ++V  L  A +A V  P  + +   K   +  
Sbjct: 57  LFRWNSRDVGGGALDFVQRYIGISSFRDAVAYLNHADLAPVTEPTRESRQPFKYHFKNS 115


>gi|123996935|gb|ABM86069.1| hook homolog 1 (Drosophila) [synthetic construct]
          Length = 728

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 104/304 (34%), Gaps = 25/304 (8%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D             + ++  + 
Sbjct: 269 DDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQ 328

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      +R +++ L +  +          ++  +    +   +   +            
Sbjct: 329 KLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSE 388

Query: 481 SLREAALLLTLIN----HPAILQEQYQELAD---IRYDNNELQ--KLWSFLFSDFVEQKY 531
           S R   L   +      H A+L+E+ + +     ++  N EL+  ++     +       
Sbjct: 389 SKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTDASAT 448

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALA------- 583
              E +   +    + E+  +L  + +   L    +E   I ++++  +Q          
Sbjct: 449 KSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELET 508

Query: 584 ----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQE 635
                 +R R L +Q E+++K + +  +K E E ++ L   L     ++     +++ ++
Sbjct: 509 EQRLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQ 568

Query: 636 AMIE 639
            +IE
Sbjct: 569 ELIE 572


>gi|328953205|ref|YP_004370539.1| ATP-dependent chaperone ClpB [Desulfobacca acetoxidans DSM 11109]
 gi|328453529|gb|AEB09358.1| ATP-dependent chaperone ClpB [Desulfobacca acetoxidans DSM 11109]
          Length = 858

 Score = 41.8 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 75/219 (34%), Gaps = 21/219 (9%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R ++           +  +++    + ++     ++++A++       
Sbjct: 319 YRKYIEKDAALERRFQPILAVEPSVEDTISILRGLKERYEVHHGVRIKDSAIIAAATLSK 378

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     +   +    KL   + S   E          + +  +           
Sbjct: 379 RYITDRFLPDKAVDLIDEAASKLRIEIDSLPAEIDEVERRIRQEEIERQALK------KE 432

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------AQVTAK 608
               +       + ++ D+++        +++ +       EI++QI       AQ   +
Sbjct: 433 NDPASLERLEKIDRSLADLKEQTAAMKVRWQQEKDAITHIREIKEQIEQTKISEAQAERQ 492

Query: 609 GEAEKTAIL-ISILHEVHIQIH-------QIESQEAMIE 639
           G+  K A L    L  +  Q+        +++   AM++
Sbjct: 493 GDLAKAAELRYGALLNLQKQLEAENHKLAELQRDGAMLK 531



 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 84/251 (33%), Gaps = 34/251 (13%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK----- 478
           Y     DRL+ + ++ +        +  +             +  S+++K  L++     
Sbjct: 251 YRGEFEDRLKAVVKEVVESDGKIILFIDEMHTLVGAGAAEGAVDASNMLKPPLARGELRC 310

Query: 479 --KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF---L 533
               +L E       I   A L+ ++Q +  +     +   +   L   +          
Sbjct: 311 IGATTLNEY---RKYIEKDAALERRFQPILAVEPSVEDTISILRGLKERYEVHHGVRIKD 367

Query: 534 PEEIHQ------RLCERGF-GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
              I         + +R    + +  +D       +   +  A I +V +  +Q     +
Sbjct: 368 SAIIAAATLSKRYITDRFLPDKAVDLIDEAASKLRIEIDSLPAEIDEVERRIRQEEIERQ 427

Query: 587 ------------RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                       R   + R   ++++Q A +  + + EK A  I+ + E+  QI Q +  
Sbjct: 428 ALKKENDPASLERLEKIDRSLADLKEQTAAMKVRWQQEKDA--ITHIREIKEQIEQTKIS 485

Query: 635 EAMIEGFGKMS 645
           EA  E  G ++
Sbjct: 486 EAQAERQGDLA 496


>gi|322492999|emb|CBZ28284.1| hypothetical protein, unknown function [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 2269

 Score = 41.8 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 45/118 (38%), Gaps = 18/118 (15%)

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ------- 594
             E    +    L++QV +  + +A  E    D+         L +R+  L R        
Sbjct: 1879 REATLRQACAALEQQVNELRVEAAEAEHLREDLATLRADYAELEQRYSELERMATAAGGG 1938

Query: 595  -KEEIEKQIAQVTAKGEAEKTAILISILHEVHI-----QIHQIESQEAMIEGFGKMSG 646
              +E+++   Q+  +    +   L + + ++ +     ++     QEA+ E    +SG
Sbjct: 1939 TMQELKQLRQQLKVR--EAELEELKARMQDLVLSKAAPELEAARRQEALRE---SLSG 1991


>gi|320451368|ref|YP_004203464.1| putative zinc ribbon domain family [Thermus scotoductus SA-01]
 gi|320151537|gb|ADW22915.1| putative zinc ribbon domain family [Thermus scotoductus SA-01]
          Length = 251

 Score = 41.8 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 45/134 (33%), Gaps = 14/134 (10%)

Query: 513 NELQKLWS------FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
             L+ L+        +     E +    + +  +       + L +L  +  +       
Sbjct: 16  EALKALYDLQEKDLEIDRLQKEAETLPEDLVSVKAQVEALEDRLAELLERQAELRKEYNR 75

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQ------KEEIEKQIAQVTAKGEA--EKTAILI 618
              +I D+    +QA A  ++ +    Q       ++I+ +I ++        E    L 
Sbjct: 76  HSLDIEDLTAKEKQAEAEQRQAQSAREQTQYENRIQQIKDRIKELLELSTPIMEAMENLE 135

Query: 619 SILHEVHIQIHQIE 632
           + + EV  Q+  + 
Sbjct: 136 NEIQEVEAQLAALR 149


>gi|296233035|ref|XP_002807845.1| PREDICTED: LOW QUALITY PROTEIN: protein Hook homolog 2-like
           [Callithrix jacchus]
          Length = 720

 Score = 41.8 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 87/262 (33%), Gaps = 23/262 (8%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  DE  +           +   + R    + +R +++QL ++         +  ++  R
Sbjct: 296 DEMDELRQSSERAGQLEATLTSCRRRLGELRELRRQVRQLEERNAGHAERTRQLEEELRR 355

Query: 456 HRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLL---TLINHPAILQEQYQELADIRYD 511
               +     +  Q   ++G+  ++    E  L         + ++ +E+ + LA+    
Sbjct: 356 AGSLRVQLEAQRRQVQELQGQRQEEAMKAEKWLFECRNLEEKYESVTKEKERLLAERDSL 415

Query: 512 NNELQKLWSF------LFSDFVEQKYFLPE--EIHQRLCERGFGELLKQLDRQVRDAGLW 563
               ++L         L    +      P    +   +      E L +L  + +     
Sbjct: 416 REANEELRCAQLQPRGLTQADLSMDPTSPAVDNLAAEILPAELRETLLRLQLENKRLCRQ 475

Query: 564 SATTEANIVDVRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKGEAE 612
            A       ++++  ++A                +   L  Q E+++K + +   K E  
Sbjct: 476 EAADRERQEELQRHLEEANRARHGLETQHRLNQQQLSELRAQVEDLQKSLQEQGGKTEDA 535

Query: 613 KTAILISILHEVHIQIHQIESQ 634
            + +L   L E   ++H+ + +
Sbjct: 536 ISILLKRKLEEHLQKLHEADLE 557


>gi|265991903|ref|ZP_06104460.1| ATP-dependent chaperone ClpB [Brucella melitensis bv. 1 str. Rev.1]
 gi|263002969|gb|EEZ15262.1| ATP-dependent chaperone ClpB [Brucella melitensis bv. 1 str. Rev.1]
          Length = 687

 Score = 41.8 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 80/211 (37%), Gaps = 32/211 (15%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++KY+ + +   R ++           +  +++    K +   K  + ++AL+   + 
Sbjct: 368 EEYRKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAAML 427

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +    +L   + S                       E+ +++
Sbjct: 428 SNRYITDRFLPDKAIDLVDEAASRLRMQVDS-----------------KPEELDEIDRRI 470

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            +   +       T+A   D             R + + ++  ++E++ A++TAK +AEK
Sbjct: 471 MQLKIEREALKVETDAASKD-------------RLQRIEKELSDLEEESAELTAKWQAEK 517

Query: 614 TAILISILHEVHIQIHQIESQEAMIEGFGKM 644
             + ++   ++  Q+ +  +  A+ +  G+ 
Sbjct: 518 QKLGLAA--DLKRQLEEARNALAIAQRNGEF 546


>gi|229368710|gb|ACQ62994.1| CDC42 binding protein kinase gamma (predicted) [Dasypus
           novemcinctus]
          Length = 1552

 Score = 41.8 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 17/126 (13%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV---RDAGLWSATTEANIVDVRQGY- 578
                ++K  L +++ + L        L+QL ++V   R+    +       +D   G  
Sbjct: 419 LRCLEQEKGELSQKLQEALQTPSAHRELEQLQKEVQTLRERLPETLEESKAPLDQTDGSP 478

Query: 579 ----QQALALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIE 632
                QA AL +    L ++  E   ++     +  G   +   L+  L E        +
Sbjct: 479 ASGPGQASALRQERDQLQQELAEARARLQVQEQELCGAQARQEELLRRLQE-------AQ 531

Query: 633 SQEAMI 638
            +EA +
Sbjct: 532 EREAAV 537


>gi|150020415|ref|YP_001305769.1| replicative DNA helicase [Thermosipho melanesiensis BI429]
 gi|149792936|gb|ABR30384.1| replicative DNA helicase [Thermosipho melanesiensis BI429]
          Length = 445

 Score = 41.8 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 40/117 (34%), Gaps = 6/117 (5%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           + S      E A++ +++ +P  ++     ++   + + +  +++  +   + E      
Sbjct: 2   RNSPHNIEAERAVIGSILINPETVEAIVPIVSSRDFYDPKNVEIFKVIEELYDEGIPIDL 61

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
             I  RL  +G      +L+    +  +             + Y Q +      R L
Sbjct: 62  ISICDRLRTKG------KLEFVGGELYVAQLADIVPTSAHVETYAQIVRDKSILRAL 112


>gi|7705415|ref|NP_056972.1| protein Hook homolog 1 [Homo sapiens]
 gi|41688595|sp|Q9UJC3|HOOK1_HUMAN RecName: Full=Protein Hook homolog 1; Short=h-hook1; Short=hHK1
 gi|3005085|gb|AAC09298.1| hook1 protein [Homo sapiens]
 gi|15079605|gb|AAH11621.1| Hook homolog 1 (Drosophila) [Homo sapiens]
 gi|56202882|emb|CAI22779.1| hook homolog 1 (Drosophila) [Homo sapiens]
 gi|119627020|gb|EAX06615.1| hook homolog 1 (Drosophila), isoform CRA_a [Homo sapiens]
 gi|123982108|gb|ABM82883.1| hook homolog 1 (Drosophila) [synthetic construct]
 gi|158258060|dbj|BAF85003.1| unnamed protein product [Homo sapiens]
          Length = 728

 Score = 41.8 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 104/304 (34%), Gaps = 25/304 (8%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D             + ++  + 
Sbjct: 269 DDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQ 328

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      +R +++ L +  +          ++  +    +   +   +            
Sbjct: 329 KLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSE 388

Query: 481 SLREAALLLTLIN----HPAILQEQYQELAD---IRYDNNELQ--KLWSFLFSDFVEQKY 531
           S R   L   +      H A+L+E+ + +     ++  N EL+  ++     +       
Sbjct: 389 SKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTDASAT 448

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALA------- 583
              E +   +    + E+  +L  + +   L    +E   I ++++  +Q          
Sbjct: 449 KSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELET 508

Query: 584 ----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQE 635
                 +R R L +Q E+++K + +  +K E E ++ L   L     ++     +++ ++
Sbjct: 509 EQRLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQ 568

Query: 636 AMIE 639
            +IE
Sbjct: 569 ELIE 572


>gi|326474552|gb|EGD98561.1| dynactin [Trichophyton tonsurans CBS 112818]
          Length = 1352

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/248 (10%), Positives = 71/248 (28%), Gaps = 33/248 (13%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              ++ +L+ + +K   +           A     +   Q+L +    + +       + 
Sbjct: 306 LDDLKTKLKIMEKKRAEDREKLKMVETYRAERDKFETIIQKLREKYQPQQQEITTLRKQL 365

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                 +     +  E    L     D    +++   + +++   K    E   +    +
Sbjct: 366 KEAEYRVEEVERLQAEHESILEMAALDREMAEEVAESIKAEYEALKIRTEELELEVEVLK 425

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY--------QQALALYKRFRLLSRQKE 596
              + L Q+      +       E     +R+          QQ   L  + + L  + +
Sbjct: 426 EENDQLGQIMSPEEKSSQGWLQMERTNERLREALIRLRDMTQQQEADLKDQVKELEEELK 485

Query: 597 E------------------------IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ-I 631
           +                        +++Q+  + A+   E+         E   ++   I
Sbjct: 486 DYNNLKAQYESTKEKLLASEANMEDLKQQVEALGAEEMIEELTEKNMQYQEEVNELKAII 545

Query: 632 ESQEAMIE 639
           E  E++ E
Sbjct: 546 EDLESLKE 553



 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 70/226 (30%), Gaps = 22/226 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +    RL+ + Q+   +     +  ++  +  +         +  L+  + + +   ++
Sbjct: 455 LREALIRLRDMTQQQEADLKDQVKELEEELKDYNNLKAQYESTKEKLLASEANMEDLKQQ 514

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-E 543
              L          +E  +EL +      E       +  D    K    E     +  E
Sbjct: 515 VEALG--------AEEMIEELTEKNMQYQEEVNELKAIIEDLESLKELNDELEINHIESE 566

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E +   +    +     +  +A I D+     +   L    +          +QI 
Sbjct: 567 KQLQEEIDFREGIYHEQNRKISQQDAVIEDLEYTLSKFRELVSTLQNDLEDMR-ASQQIT 625

Query: 604 QVTAKGEAEKTAILISILHEVHI------------QIHQIESQEAM 637
           +  A     ++  ++ +  ++              ++ ++E++E+ 
Sbjct: 626 ETEATDLTVRSRAMMDLNMKLQASAAKAQVKSMDLELGRMEAEESA 671


>gi|284163661|ref|YP_003401940.1| seryl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284013316|gb|ADB59267.1| seryl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 459

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           +     L     + ++ ++ +  ++   L  +   L  ++ +I +QI ++ A+G+ E+  
Sbjct: 12  EEVREALDDRGADVDLEEILEIDERWRELKAKGDELRHERNQITQQIGELVAEGKDEERE 71

Query: 616 ILISILHEVHIQIHQIESQEA 636
             I    E+  +I  IE  EA
Sbjct: 72  EAIEQSKELKSEIEDIE-TEA 91


>gi|281341712|gb|EFB17296.1| hypothetical protein PANDA_004285 [Ailuropoda melanoleuca]
          Length = 853

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 63/190 (33%), Gaps = 14/190 (7%)

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
           A    +  P   L     ++  L      +E A LL+ I  P       + L+ + +   
Sbjct: 21  ASPASRTNPFPVLHLVEDLRLALEMLEQPQERAALLSQIPGP-TAAYIKESLSQVNHQGA 79

Query: 514 ELQKLWSFLFSDFVEQKY---FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              + +    +     K         +  ++  +G     +++               A 
Sbjct: 80  ASNETYQERLARLEGDKESLILQVSVLTDQVEAQG-----EKIRDLELCLEGHQVKLNAA 134

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-----AQVTAKGEAEKTAILISILHEVH 625
              ++Q      +L  +   L  +  E++ ++      Q   + +  K   L+  L  + 
Sbjct: 135 EEMLQQELLSRTSLETQKLDLMTEVSELKLKLVGMEKEQRDQEEKQRKAEELLQELRHLK 194

Query: 626 IQIHQIESQE 635
           I++ ++E+++
Sbjct: 195 IKVEELENEQ 204


>gi|221131913|ref|XP_002160422.1| PREDICTED: similar to viral A-type inclusion protein [Hydra
           magnipapillata]
          Length = 776

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 31/276 (11%), Positives = 105/276 (38%), Gaps = 15/276 (5%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK--DQKLRYYY 424
                 +         + + + E E+       ER+E+     + I ++    ++ +   
Sbjct: 74  RVNNLLQSFKNKKSEWEEMVRLEREDLENQFERERSEMNAAFAHEIANLARISEEEKALM 133

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           ++   ++++ L ++   +     + +  N   + +        +   ++ +  ++  + E
Sbjct: 134 NKQFEEKMK-LREQEFEKEKDNLKQFFLNESEKIKVQLLSECEEKITLEREFQRRLEISE 192

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             L    +N     +E+ + +A +  +N         L +   E+     EEI +   + 
Sbjct: 193 MTLRKETLN-----REEIERIATLEKNNT------QALVNMLKEEIERFKEEIDRLKKQP 241

Query: 545 GFGELLKQLDRQV-RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                ++ ++++V  +  + S  +  ++    +     L    +  L  + K+E+EK++ 
Sbjct: 242 IPCPEVRIVEKEVPNNNSVLSFKSRMDLPPNLKDEFDFLLNEYKENLKDKYKKELEKRLN 301

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +   + E +       +  E+  ++   + QE++++
Sbjct: 302 EEKLRIEKDFNRNREDMEKEIERRLRTKQLQESLLD 337


>gi|149178690|ref|ZP_01857274.1| Secretion protein HlyD [Planctomyces maris DSM 8797]
 gi|148842465|gb|EDL56844.1| Secretion protein HlyD [Planctomyces maris DSM 8797]
          Length = 400

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 3/115 (2%)

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            +     ++   L +    EL+ +    +  A              ++ Y++ L L K  
Sbjct: 86  GERIKANDVILELNDTELQELVSKAAASLTVAKAQLKAQVTGQELAQKAYERLLVLQKSG 145

Query: 589 RLLSRQKEEIE--KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
               ++ EE    K I +   + E  +     S L +  +++ +     A  +GF
Sbjct: 146 VSTQQEMEEALANKAIQEAQTELEEARVEQAESDLEQSRLRLQE-NKVLAPTDGF 199


>gi|107099867|ref|ZP_01363785.1| hypothetical protein PaerPA_01000887 [Pseudomonas aeruginosa PACS2]
          Length = 447

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 47/153 (30%), Gaps = 12/153 (7%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  L+   A        L    +  +E + +++ +     +   F    + + + 
Sbjct: 14  AEQGVLGGLMLDNAAWDIVGDHLQKEDFFRHEHRLIFTAISELAAKDAPFDVVTVSEAIE 73

Query: 543 ERGFGELLKQLDRQV-RDAGLWSATTEANIVDVRQGYQQALALYKRFR-----------L 590
           +      L  L +       + +    A IV  R   +Q ++L                 
Sbjct: 74  DLPEAGGLAYLGQLADNTPSVANIEAYAQIVRDRAHLRQLMSLGHHCTRTASNHQANPCE 133

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
           +  + E+    + Q   K +       ++ + +
Sbjct: 134 VQEEIEQKLFALGQDQHKSDFVDINKGLAKIVD 166


>gi|254238792|ref|ZP_04932115.1| Replicative DNA helicase [Pseudomonas aeruginosa C3719]
 gi|126170723|gb|EAZ56234.1| Replicative DNA helicase [Pseudomonas aeruginosa C3719]
          Length = 448

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 47/153 (30%), Gaps = 12/153 (7%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +L  L+   A        L    +  +E + +++ +     +   F    + + + 
Sbjct: 14  AEQGVLGGLMLDNAAWDIVGDHLQKEDFFRHEHRLIFTAISELAAKDAPFDVVTVSEAIE 73

Query: 543 ERGFGELLKQLDRQV-RDAGLWSATTEANIVDVRQGYQQALALYKRFR-----------L 590
           +      L  L +       + +    A IV  R   +Q ++L                 
Sbjct: 74  DLPEAGGLAYLGQLADNTPSVANIEAYAQIVRDRAHLRQLMSLGHHCTRTASNHQANPCE 133

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
           +  + E+    + Q   K +       ++ + +
Sbjct: 134 VQEEIEQKLFALGQDQHKSDFVDINKGLAKIVD 166


>gi|332842422|ref|XP_003314416.1| PREDICTED: nesprin-2 [Pan troglodytes]
          Length = 6907

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 89/280 (31%), Gaps = 20/280 (7%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+         +   L      ++   + +   ++  N  D  + ++++LK C    + +
Sbjct: 1809 PELSELKKQYESVSDLFNTKKSVLQDHFSKLLNDQCKNFNDWFSNIKMNLKECFESSETK 1868

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            K      Q + D L    +    +         K    +         +     + +  +
Sbjct: 1869 KSVEQKLQKLSDFLTLEGRNSKIKQVDSVLKHVKKHLPKAHVKELISWLVGQEFELEKME 1928

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                                +E    L  +    ++ + L  +L +   + K        
Sbjct: 1929 SICQA-------------RAKELEDSLQQLLRLQDDHRNLSKWLTNQEEKWKGMEESGEK 1975

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
              L       L ++ ++    A L ++  E    +  +   ++  L  R++ L RQ  EI
Sbjct: 1976 TEL---FCQALARKREQFESVAQLNNSLKEYGFTEEEEIIMESTCLMDRYQTLLRQLSEI 2032

Query: 599  EKQIAQVTAKGEA---EKTAILISILHEVHIQIHQIESQE 635
            E++  +++   +    +    +I  + E+   +  + S E
Sbjct: 2033 EEE-DKLSPTEDQSFNDLAHDVIHWIKEIKESLMVLNSSE 2071


>gi|328951061|ref|YP_004368396.1| DNA repair protein RecN [Marinithermus hydrothermalis DSM 14884]
 gi|328451385|gb|AEB12286.1| DNA repair protein RecN [Marinithermus hydrothermalis DSM 14884]
          Length = 527

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 68/249 (27%), Gaps = 22/249 (8%)

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
               +     R  Y +A       L ++     +   R  + +      +   +      
Sbjct: 125 LDATVPSPT-RAAYRKAYATYRALLEEEARLHEAARERERRLDVLRFQLEEIQKANPTPG 183

Query: 471 LVKGKLSKKPSLREAALL----LTLINHPA--------ILQEQYQELADIRYDNNELQKL 518
             +   ++   LR   +L       +   +        ++ E  + L      +  L  L
Sbjct: 184 EDEALAAEAEKLRHLEVLRERVALALQRLSGEEADALGLVGEAVRALRSAARHDPALTPL 243

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCE--------RGFGELLKQLDRQVRDAGLWSATTEAN 570
              L        Y + +E+ Q L +              L  L+R  R  G       A 
Sbjct: 244 GEDL-EAAASTLYAIVQELEQYLEDLEADPARLEAVEARLALLERLKRKYGDSLEEVRAF 302

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               ++  +       R   + +   E E+ + Q        +     ++      ++  
Sbjct: 303 AEATQREIEHLETAETRLGEVRQALAEAEEAVWQAGQALSTARRQAAQALEAAATRELRA 362

Query: 631 IESQEAMIE 639
           +   EA +E
Sbjct: 363 LGMPEARLE 371


>gi|311265676|ref|XP_003130769.1| PREDICTED: vimentin-like [Sus scrofa]
          Length = 827

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 48/149 (32%), Gaps = 17/149 (11%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE------------ 543
            +       +  +R+   + + L + L     + K  L +   + + E            
Sbjct: 470 ELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDK 529

Query: 544 ----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                    L + + R        +   E     ++   Q           L R+ E ++
Sbjct: 530 ARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLERKVESLQ 589

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQI 628
           ++IA +    + E+   L + + E H+QI
Sbjct: 590 EEIAFLKKLHD-EEIQELQAQIQEQHVQI 617



 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 50/130 (38%), Gaps = 13/130 (10%)

Query: 509 RYDNNELQKLWSFLFSDFVEQK--YFLPEEIHQ---RLCERGFGELLKQLDRQVRDAGLW 563
                E+++L   +     ++       + + +   RL E+   E L++ + +       
Sbjct: 509 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFR 568

Query: 564 SATTEANIVDVR-----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-IL 617
                A++  +      +  Q+ +A  K+      + +E++ QI +   + + + +   L
Sbjct: 569 QDVDNASLARLDLERKVESLQEEIAFLKKLH--DEEIQELQAQIQEQHVQIDMDVSKPDL 626

Query: 618 ISILHEVHIQ 627
            + L +V  Q
Sbjct: 627 TAALRDVRQQ 636


>gi|317129766|ref|YP_004096048.1| peptidase M23 [Bacillus cellulosilyticus DSM 2522]
 gi|315474714|gb|ADU31317.1| Peptidase M23 [Bacillus cellulosilyticus DSM 2522]
          Length = 417

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 27/237 (11%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           +       FQ          R  +     + +           L   K   K +  E  +
Sbjct: 16  LSTLTVLTFQVVEANEEDLERKIESYQERQGEIDREAEEANRELETIKQKIKQAYNEFQV 75

Query: 488 L-------LTLINHPAI-LQEQYQELADIRYDN--------NELQKLWSFLFSDFVEQKY 531
           L         LIN   I + E  + +  +  +            + L   + S +     
Sbjct: 76  LDEKAVETKKLINEKEIEMDETEERIEVLHIEIEELEERIAQRDELLKDRVRSMYQTGGI 135

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               E+   L  + FG+L++++      A       E ++ D        + L  +   L
Sbjct: 136 INYIEVI--LGSKSFGDLIERVSALTTIARQDRNILEQHVADKEALDMAFIDLESQLTSL 193

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV---------HIQIHQIESQEAMIE 639
             Q+ E++  + ++  K + ++  + +    ++           +   +++QEA  +
Sbjct: 194 EEQRRELQSLLQKIEDKLQEKEEIVEMLEKQQIDVEDFIVSYEEEKTILKNQEAAAK 250


>gi|210621023|ref|ZP_03292408.1| hypothetical protein CLOHIR_00351 [Clostridium hiranonis DSM 13275]
 gi|210155007|gb|EEA86013.1| hypothetical protein CLOHIR_00351 [Clostridium hiranonis DSM 13275]
          Length = 448

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/149 (8%), Positives = 50/149 (33%), Gaps = 14/149 (9%)

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             E ++L   +   ++  +  + +    + +   +++++ + +   + K      +   L
Sbjct: 12  KAEQSVLGAFLVENSVTFKARE-IKADLFYHAAHKEIFNAMINILNQNKAVDMITLTDEL 70

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +RG    +  +        + + T   +              + +         EI+ Q
Sbjct: 71  EKRGTLNSIGGVTYLTSLVSIVTTTRNIDT-------------HIQILKEKYLVREIQTQ 117

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             ++     +++   + S + E+   I +
Sbjct: 118 AQELLNNINSKQITEIQSDVDELKSIISK 146


>gi|197294285|ref|YP_001798826.1| Replicative DNA helicase [Candidatus Phytoplasma australiense]
 gi|171853612|emb|CAM11483.1| Replicative DNA helicase [Candidatus Phytoplasma australiense]
          Length = 447

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 50/165 (30%), Gaps = 11/165 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K        E ALL  L+ +P  +      + +      + + ++  +     E     
Sbjct: 5   NKKKPYSPEAEQALLGVLLLNPEKVPFVLDLINEDCLYEAKHKYIFKAMKQLHQEGHAID 64

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT------EANIVDVRQGYQQALALYKR 587
              +   L        +  +D  +    +  A+       +       +      A Y  
Sbjct: 65  YVSVSSSLENEKLLSKIGNIDYLIELVEMTPASEYLETYIDLIKETALKREIMETASYLA 124

Query: 588 FR-----LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            +      +    +E E++I  +T + +      L ++L E+  +
Sbjct: 125 QKGYDQIDVQSYLDEAEEKIFNLTQRKKTSDLLDLKNLLKEIKSK 169


>gi|148240713|ref|YP_001226100.1| chaperone ClpB [Synechococcus sp. WH 7803]
 gi|147849252|emb|CAK24803.1| Chaperone ClpB [Synechococcus sp. WH 7803]
          Length = 921

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 46/138 (33%), Gaps = 14/138 (10%)

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR-QGYQQ 580
           L  +   Q         Q + +      L++++  V  A          +   R +    
Sbjct: 446 LIDEAAAQLKMDVTSKPQVVEDAEMA--LRRVELSVLAAEQAPEAERVQLQRQRLEATTH 503

Query: 581 ALALYKRFRLLSRQKEEIEK----------QIAQVTAKGEAEKTAIL-ISILHEVHIQIH 629
              L +R++    Q EE+ +           +A+   +G+ E+ A L    LH +  +  
Sbjct: 504 LSRLRERWQAERAQLEELRQLLQEDEDLRHAMAEAEREGDLEEAARLQYDQLHRLQQRRD 563

Query: 630 QIESQEAMIEGFGKMSGR 647
            +E   +  +  G    R
Sbjct: 564 ALEQSLSDAQAAGTALLR 581


>gi|322818428|gb|EFZ25845.1| kinesin, putative [Trypanosoma cruzi]
          Length = 1170

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/291 (7%), Positives = 97/291 (33%), Gaps = 17/291 (5%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R     A       +   + +   +   ++      ++ +           +    L   
Sbjct: 698 RNKRPDASNSAEQVAELNIRVQNLKREVDKMRKYDAKKEQYMQRYSFFYVDLASDILHRI 757

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             Q   + ++Q+   +I+++   G   ++  +   ++    R      ++       +  
Sbjct: 758 MLQKEEEFVRQVAHLFISQNGEMGDGIRRLNKAHREEMEQMRKRHVEEMEELHKLSSARL 817

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           + ++  +   +  ++ +   +L  +       ++ +        E+         ++L  
Sbjct: 818 KESIEKSNELYQQLIDKHVDKLNYVEERMMNNKEFYEAELKRLGEENEKTRVRYEEQLDR 877

Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                 +  ++L  Q+         +   +  +++  +    + +R   + R +++ E++
Sbjct: 878 VRTQHQKETRKLREQLSSGASDRQRSGEVVKRLQE--EHEKEMNRRQEEMDRYRQDKEQE 935

Query: 602 IAQVTAKGEAEKTA-------------ILISILHEVHIQIHQIESQEAMIE 639
           I+++  + + EK                L   ++E+  ++ + +++   +E
Sbjct: 936 ISRLKKQVDNEKLRYESDMLEKERQRRSLEREVNELRRELLKAQTERNRME 986


>gi|310828864|ref|YP_003961221.1| hypothetical protein ELI_3296 [Eubacterium limosum KIST612]
 gi|308740598|gb|ADO38258.1| hypothetical protein ELI_3296 [Eubacterium limosum KIST612]
          Length = 426

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR--------LLSRQKEEIEKQIA 603
            +     +  L          D +      +    R           L  Q+  I KQI 
Sbjct: 3   DIKLLRTNPELVKENIRKKFQDEKLVLVDEVVEMDRKYRDSKTEGDTLRAQRNTISKQIG 62

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
              +KG+ ++     + + E++ Q+ ++E+ EA +EG
Sbjct: 63  GFMSKGQKDEAEKAKAQVVEINKQLEELEALEAKLEG 99


>gi|302772635|ref|XP_002969735.1| hypothetical protein SELMODRAFT_440925 [Selaginella moellendorffii]
 gi|300162246|gb|EFJ28859.1| hypothetical protein SELMODRAFT_440925 [Selaginella moellendorffii]
          Length = 461

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/103 (12%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLSRQKEEI-- 598
            +     ++ + +++      +  + E     +R +  +Q L    R   L R+K E+  
Sbjct: 24  RDNCKDFVINEFEKKSAALVDYLNSLECAYERLRLEAERQKLDCEHREAQLKREKAELKY 83

Query: 599 --EKQIAQVTAKGEAE-----KTAILISILHEVHIQIHQIESQ 634
             E  + +       +     +   L+  + E+  +I +++ +
Sbjct: 84  MLESALERDRRLEHDKCVLLKEKERLLERIQELEARIDELQRE 126


>gi|298372184|ref|ZP_06982174.1| chaperone protein ClpB [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275088|gb|EFI16639.1| chaperone protein ClpB [Bacteroidetes oral taxon 274 str. F0058]
          Length = 717

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 58/220 (26%), Gaps = 28/220 (12%)

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I+ +     +   I   +     +   + +   +        R     +    Q    K 
Sbjct: 120 IESEGEIILFIDEIHTLVGAGKSEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKD 179

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K        E    + ++N P                      +   L   +        
Sbjct: 180 KA------LERRFQMVMVNEPDEASSI---------------AILRGLKERYENHHQV-- 216

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                R+ +      ++   R + +  L     +       +   +  ++ +   +L R 
Sbjct: 217 -----RIKDEAIIAAVELSSRCITNRFLPDKAIDLMDEAAAKLRLEVNSMPEELDILERN 271

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +++E +   +    + EK   L   + E   +  ++  Q
Sbjct: 272 IKQLEIEREAIKRDNDEEKLQKLSDEITEQKQKASEVRKQ 311


>gi|296121105|ref|YP_003628883.1| ATPase [Planctomyces limnophilus DSM 3776]
 gi|296013445|gb|ADG66684.1| ATPase-like protein involved in DNA repair [Planctomyces
           limnophilus DSM 3776]
          Length = 1342

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/216 (9%), Positives = 61/216 (28%), Gaps = 20/216 (9%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            ++  +L ++ +++     R  ++  + R          +    +       +  +    
Sbjct: 632 AEKQNELAERVLSQIEALRRVRERLEKGRQTATEWATTQRRLQEEKSNVPPDATLQELGR 691

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS--DFVEQKYFLPEEIHQRLCE--- 543
                +    Q+    +        E +++           E +    + + + L E   
Sbjct: 692 QLTQANEQARQQVEANII------PEFERIRREGMENQVIDETQAREWQAVKEELRELTT 745

Query: 544 ---RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                  EL  +  + +       A  +++          A AL +           +  
Sbjct: 746 GPLTDLAELSSKASQPISQKETTPAKDDSDPSQADPSQTLAEALRQNQEAAIETTSALIS 805

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           +++Q   K        L   L E+  Q   ++ + A
Sbjct: 806 RLSQWEGK------RGLQRELDELQKQQAALQKESA 835


>gi|158286694|ref|XP_308874.4| AGAP006884-PA [Anopheles gambiae str. PEST]
 gi|157020591|gb|EAA04254.4| AGAP006884-PA [Anopheles gambiae str. PEST]
          Length = 1464

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/206 (10%), Positives = 60/206 (29%), Gaps = 1/206 (0%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            Q  ++ L+        E     +  K+    +       R ++      +     SL+E
Sbjct: 661 IQEEKNGLRAANDDLAKELKQVRQEMKQLTAQKQTLTEEVRNLKIINENSESEALRSLQE 720

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           +           +L+        +   ++E ++L         + +    E+        
Sbjct: 721 SMRASMAAAETKLLETTRDLNHVLELKSDENRRLGEERDELVEKLEGAHKEKADLETEGT 780

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                ++ +  + RD             +++   +  L    R     +  +E   ++ +
Sbjct: 781 SLRAKIETVRGEKRDLEKTLEREIREKTELKAQVENILQEIGRLEEQLKDIKEAHSKLQE 840

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQ 630
              +   EK   L     E  +++ +
Sbjct: 841 -EKQTLEEKIERLQREHCEARVKLEK 865


>gi|114595519|ref|XP_517376.2| PREDICTED: centromere protein E isoform 5 [Pan troglodytes]
 gi|114595521|ref|XP_001170294.1| PREDICTED: centromere protein E isoform 3 [Pan troglodytes]
          Length = 2665

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 73/214 (34%), Gaps = 16/214 (7%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
              I +  + L                   +    K       +      +L K+   +  
Sbjct: 1802 DKISNMQKDLENSNAKLQEKIQELKANEHQLFKLKKDVNETQKKVSEMEQLKKQIKDQSL 1861

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L    + +  + Q+ ++ L +++    E   L         E      +++ + L E  
Sbjct: 1862 TLSKLEMENLNLAQKLHENLEEMKSVMKERDNLRR-----VEETLKLERDQLKESLQETK 1916

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSRQKEEIEKQIAQ 604
              +L  ++ ++++ A + S   +     +R+   +  + +    + L + K+E++K+I +
Sbjct: 1917 ARDL--EIQQELKTARMLSKEHKETADKLREKISEKTIQISDIQKDLDKSKDELQKKIQE 1974

Query: 605  VTA--------KGEAEKTAILISILHEVHIQIHQ 630
            +          K +   +   I+ + ++  Q   
Sbjct: 1975 LQKKELQLLRVKEDVNMSHKKINEMEQLKKQFEA 2008


>gi|57014043|gb|AAW32538.1| lamin A/C transcript variant 1 [Homo sapiens]
          Length = 664

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 104/319 (32%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR   ++   +RLQ + ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRVGAE---NRLQTMKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|308496705|ref|XP_003110540.1| CRE-MYO-5 protein [Caenorhabditis remanei]
 gi|308243881|gb|EFO87833.1| CRE-MYO-5 protein [Caenorhabditis remanei]
          Length = 1960

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 9/231 (3%)

Query: 407  HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
                         LR  ++ A+ +   QL               +KN + R+     Q  
Sbjct: 1189 EDAAINAETSMAALRKKHNDAVAELSDQLDTVQKMR---GKLEREKNDKQREVDELQQSA 1245

Query: 467  MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
               +  +    +     EA L    +      +   +        ++E Q L   L    
Sbjct: 1246 DVEAKQRQTCERMAKQLEAQLTDITLKSDEQARLIQELTMSKNKTHSENQDLNRQLEDAE 1305

Query: 527  VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             +       +  Q          L Q  R+ +      +  +     +R+  ++      
Sbjct: 1306 SQLSALNRIKQQQHNQMEELKRTLDQETRERQSFHSQVSNYQLECEQLRESLEEEQDA-- 1363

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIESQ 634
                + RQ  +   +I Q  AK E E   +   L     ++  ++ +++ Q
Sbjct: 1364 -KTDVQRQLSKANSEIQQWRAKFEGEGVSRAEELEETRRKLTHKVQEMQEQ 1413



 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 92/245 (37%), Gaps = 22/245 (8%)

Query: 400  ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
            ++A+LE  + N  + + D++ +       + +++Q  +      S      KK    +  
Sbjct: 921  QKADLEKQMANLNDQLCDEEEKNAALVKQKKKIEQDNEGLKKTVSDLETTIKKQESEKQA 980

Query: 460  KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
            K    R +Q  +           +E        +   + ++  +++       N L K  
Sbjct: 981  KDHQIRSLQDEIQSQDEVISKLNKEKK------HQEEVNRKLLEDIQAEEDKVNHLNKTK 1034

Query: 520  SFLFSDFVEQKY---------FLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTE 568
            + L S   E +             E+  +++        EL+++L+R   +        +
Sbjct: 1035 AKLESTLDEIEDTLEREKRGRQDCEKQKRKVEGELKIAQELIEELNRHKHEQEQVLKKKD 1094

Query: 569  ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI--LHEVHI 626
              +  ++   +   +L  +   L RQ +E+  +I ++  + E E+ +   +    +E+ +
Sbjct: 1095 IELNSLQSRLEDEQSLVAK---LQRQIKELLARIQELEEELENERQSRSKAEKARNEMQL 1151

Query: 627  QIHQI 631
            ++ ++
Sbjct: 1152 ELEEL 1156


>gi|302841201|ref|XP_002952146.1| hypothetical protein VOLCADRAFT_105370 [Volvox carteri f.
           nagariensis]
 gi|300262732|gb|EFJ46937.1| hypothetical protein VOLCADRAFT_105370 [Volvox carteri f.
           nagariensis]
          Length = 940

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           ++L          +++    E      E        +     +      +   A+   VR
Sbjct: 693 RRLRDMELRVAEAERHSKEAESRSMELEARLKATEARALEAEKRGLDCESRLAASERRVR 752

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL---HEVHIQI---- 628
               Q   L  R+R   RQK+E E Q     A  +  K+      L     +  +     
Sbjct: 753 DTECQVAELTHRWRDAERQKQEAEMQARAAEASAKQAKSDKESEALSITRALEARRNQEQ 812

Query: 629 HQIESQEAMIE 639
            Q++  +A +E
Sbjct: 813 RQLQDLQATVE 823


>gi|256820686|ref|YP_003141965.1| ATP-dependent chaperone ClpB [Capnocytophaga ochracea DSM 7271]
 gi|315223810|ref|ZP_07865659.1| chaperone protein ClpB [Capnocytophaga ochracea F0287]
 gi|256582269|gb|ACU93404.1| ATP-dependent chaperone ClpB [Capnocytophaga ochracea DSM 7271]
 gi|314946256|gb|EFS98256.1| chaperone protein ClpB [Capnocytophaga ochracea F0287]
          Length = 868

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 55/148 (37%), Gaps = 11/148 (7%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             L+ ++Q++     D      +   +   +             R+ +      ++  +R
Sbjct: 325 KALERRFQKVMVDEPDTESAISILRGIKEKYETHHKV-------RIKDEAIIAAVELSER 377

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            + +  L     +       +   +  +  +   +L R+  ++E +I  +  + + +K  
Sbjct: 378 YITNRFLPDKAIDLMDEAAAKLRMEINSKPEELDVLDRKIMQLEIEIEAIKREKDEDKLK 437

Query: 616 ILISILHEVHIQIHQI----ESQEAMIE 639
           +L   L  +  + + I    +S++++I+
Sbjct: 438 MLYVDLANLKEERNAINAKWQSEKSVID 465


>gi|256112203|ref|ZP_05453124.1| ATP-dependent chaperone ClpB [Brucella melitensis bv. 3 str. Ether]
 gi|265993630|ref|ZP_06106187.1| chaperone protein clpB [Brucella melitensis bv. 3 str. Ether]
 gi|262764611|gb|EEZ10532.1| chaperone protein clpB [Brucella melitensis bv. 3 str. Ether]
          Length = 874

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 80/211 (37%), Gaps = 32/211 (15%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++KY+ + +   R ++           +  +++    K +   K  + ++AL+   + 
Sbjct: 318 EEYRKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAAML 377

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +    +L   + S                       E+ +++
Sbjct: 378 SNRYITDRFLPDKAIDLVDEAASRLRMQVDS-----------------KPEELDEIDRRI 420

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            +   +       T+A   D             R + + ++  ++E++ A++TAK +AEK
Sbjct: 421 MQLKIEREALKVETDAASKD-------------RLQRIEKELSDLEEESAELTAKWQAEK 467

Query: 614 TAILISILHEVHIQIHQIESQEAMIEGFGKM 644
             + ++   ++  Q+ +  +  A+ +  G+ 
Sbjct: 468 QKLGLAA--DLKRQLEEARNALAIAQRNGEF 496


>gi|225556906|gb|EEH05193.1| kinesin family protein [Ajellomyces capsulatus G186AR]
          Length = 1789

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 73/253 (28%), Gaps = 11/253 (4%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
                       +    I  K  I  I D+  +      ++  +  L Q+      G  R
Sbjct: 422 HLSETLNTVQYAQRARAIQSKPRIQQITDESDKQAVIDRLKAEVAFLRQQINNSEGGDRR 481

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
                 R   Q      L    L   +     S R A L+  L        +        
Sbjct: 482 SNAPQERAERQNEREIELQNHLLDVQESYTALSQRHAKLISELTKATDFTGDTDDL--QN 539

Query: 509 RYDNNELQKL-WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
              ++ +++L  S  F++ VEQ     E+  Q L           L      + L   T 
Sbjct: 540 LLGDSAMERLKRSHSFAESVEQVVLEYEKTIQSLESS-LSNTRSSLSNTES-SLLEKETK 597

Query: 568 EANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            A I  V    Q  +  +  R         E+E ++      G         +I+ E+  
Sbjct: 598 CAYIETVNAQLQARIQKMMDREANTEHYLHELESKL-----DGHTTGEEKNAAIIAELRK 652

Query: 627 QIHQIESQEAMIE 639
           +I +    EA  E
Sbjct: 653 EIARARENEASCE 665


>gi|224496092|ref|NP_001139075.1| disks large homolog 5 [Danio rerio]
 gi|220675674|emb|CAX13265.1| novel protein similar to vertebrate discs, large homolog 5
           (Drosophila) (DLG5) [Danio rerio]
 gi|220678218|emb|CAX12689.1| novel protein similar to vertebrate discs, large homolog 5
           (Drosophila) (DLG5) [Danio rerio]
 gi|220678295|emb|CAX13990.1| novel protein similar to vertebrate discs, large homolog 5
           (Drosophila) (DLG5) [Danio rerio]
          Length = 1926

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/251 (9%), Positives = 82/251 (32%), Gaps = 22/251 (8%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF---QKYITE 442
              E +         + ELE       N   ++ +     +A+R  L        + I E
Sbjct: 411 IMSERDQVIKEVDKLQTELEAAEARLKNTSSERMVASEELEALRQELNSSLVDRDRAICE 470

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
            +     +    + + +           +   +  +  + +E      +I    +L+E Y
Sbjct: 471 RNELLEKYCHEVKDKAEAQKELSQACKDIETVREERDVARKERT--EAIIQRDQLLREYY 528

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF------------GELL 550
           Q          ++++    +     +Q   + +E+ + + E                +++
Sbjct: 529 QARQKQDSATLDMERANKEI-DILRKQCEAMSQELKEAVQEAEVAKCRRDWAFQERDKIV 587

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            + +             +  + D+    +    + K+    +R+ +E+++++    ++ +
Sbjct: 588 AERESIRTLCDNLRRERDRAVSDLADALRNLDDMRKQRNDAARELKELKEKM---ESQLD 644

Query: 611 AE-KTAILISI 620
            E +   L++ 
Sbjct: 645 KEARFCQLMAH 655


>gi|190570566|ref|YP_001974924.1| hypothetical protein WPa_0100 [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190356838|emb|CAQ54208.1| hypothetical protein WP0100 [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 388

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 83/220 (37%), Gaps = 23/220 (10%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             +  +     ++   E        +K  +  + +  S    + SL            EA
Sbjct: 59  SKVEKKFAHKERELTQEKHNLYEEERKFGQKIETERKSFLKEKKSL--------EEKLEA 110

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE------EIHQ 539
            ++  +     + ++  +E  ++     EL    S+L     E++  L E      E+ +
Sbjct: 111 KMIHIIGITDEL-EKVTKEKDELAAQEKELLHKISYLCKQLQEKEANLTERKKLIIELKR 169

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           ++    + EL K++++  ++    S   +    +    Y +   L+KR   L  + +E++
Sbjct: 170 KIDNDKYEELYKEVEKLSKEKEELSKEIDKLRKEKDILYMKKEELHKRKEELCVKLDELQ 229

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +  ++  K +        ++  E+  +  +++  + +I+
Sbjct: 230 CKFKEIDQKNK--------NLSQELKRKFEELDKADGLIK 261


>gi|50285165|ref|XP_445011.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524314|emb|CAG57911.1| unnamed protein product [Candida glabrata]
          Length = 438

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 70/209 (33%), Gaps = 25/209 (11%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            + +        R   +  R       S    +S +       +   +E  +L     + 
Sbjct: 142 IRSFRITSRNNNRTPTQGERMDIDSRASDSQTESII--KDYELRIEKQEREIL----QYR 195

Query: 496 AILQEQYQELADIRYDNNEL----QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
            +L++Q   L +I+   +E     ++L S +      +     +    +  +  F    +
Sbjct: 196 KLLEDQRIVLEEIQPTIDEYENNERRLRSRVQEL---ETELDKQREKFKSQKEFFEAEHE 252

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           QL   V    +      A   + ++   +  +L +    +++  +++  +  +  AK E 
Sbjct: 253 QLLAVVSQLQV------AIEENEQKAISRKESLREDTTEITKTIQDLTDEHERARAKWEK 306

Query: 612 EKTA------ILISILHEVHIQIHQIESQ 634
           EK         L      ++ ++  ++ Q
Sbjct: 307 EKMQLKMHNDSLSQEYQSLNKELMNMQGQ 335


>gi|18313677|ref|NP_560344.1| purine NTPase [Pyrobaculum aerophilum str. IM2]
 gi|18161228|gb|AAL64526.1| purine NTPase, probable [Pyrobaculum aerophilum str. IM2]
          Length = 702

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 26/166 (15%)

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP------EEIHQRLCERGFG- 547
           P  ++    ELA +  +   L+ L   L ++  + +          + +   L       
Sbjct: 368 PEAVKRHELELAGLEREVKRLEDLVQQLRAEVRKYESLDKMYQAYKDYLKIDLTSAKRKL 427

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             L++L R+  +     +   A +   R   ++   + +R     ++ +E+  +++Q+  
Sbjct: 428 AELEELYRKKTETERRRSYLTALVERERDVAERIKEVRRRLEENEKRLKEVSSRLSQIDR 487

Query: 608 KGEA-----EKTAILISILH--------------EVHIQIHQIESQ 634
           + E      E+   L   L               E+  Q+   ES+
Sbjct: 488 EVEEVKSSLEEAEALYQQLRVKHDEYLATEALVRELKAQLKDAESE 533


>gi|225853303|ref|YP_002733536.1| ATP-dependent chaperone ClpB [Brucella melitensis ATCC 23457]
 gi|256263208|ref|ZP_05465740.1| chaperone protein clpB [Brucella melitensis bv. 2 str. 63/9]
 gi|260562786|ref|ZP_05833272.1| chaperone clpB [Brucella melitensis bv. 1 str. 16M]
 gi|54035875|sp|Q8YJ91|CLPB_BRUME RecName: Full=Chaperone protein ClpB
 gi|225641668|gb|ACO01582.1| ATP-dependent chaperone ClpB [Brucella melitensis ATCC 23457]
 gi|260152802|gb|EEW87894.1| chaperone clpB [Brucella melitensis bv. 1 str. 16M]
 gi|263093152|gb|EEZ17266.1| chaperone protein clpB [Brucella melitensis bv. 2 str. 63/9]
 gi|326409868|gb|ADZ66933.1| ATP-dependent chaperone ClpB [Brucella melitensis M28]
 gi|326539582|gb|ADZ87797.1| ATP-dependent chaperone ClpB [Brucella melitensis M5-90]
          Length = 874

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 80/211 (37%), Gaps = 32/211 (15%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++KY+ + +   R ++           +  +++    K +   K  + ++AL+   + 
Sbjct: 318 EEYRKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAAML 377

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +    +L   + S                       E+ +++
Sbjct: 378 SNRYITDRFLPDKAIDLVDEAASRLRMQVDS-----------------KPEELDEIDRRI 420

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            +   +       T+A   D             R + + ++  ++E++ A++TAK +AEK
Sbjct: 421 MQLKIEREALKVETDAASKD-------------RLQRIEKELSDLEEESAELTAKWQAEK 467

Query: 614 TAILISILHEVHIQIHQIESQEAMIEGFGKM 644
             + ++   ++  Q+ +  +  A+ +  G+ 
Sbjct: 468 QKLGLAA--DLKRQLEEARNALAIAQRNGEF 496


>gi|332232024|ref|XP_003265199.1| PREDICTED: protein Hook homolog 1 isoform 1 [Nomascus leucogenys]
 gi|332232026|ref|XP_003265200.1| PREDICTED: protein Hook homolog 1 isoform 2 [Nomascus leucogenys]
          Length = 728

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 104/304 (34%), Gaps = 25/304 (8%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D             + ++  + 
Sbjct: 269 DDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQ 328

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      +R +++ L +  +          ++  +    +   +   +            
Sbjct: 329 KLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSE 388

Query: 481 SLREAALLLTLIN----HPAILQEQYQELAD---IRYDNNELQ--KLWSFLFSDFVEQKY 531
           S R   L   +      H A+L+E+ + +     ++  N EL+  ++     +       
Sbjct: 389 SKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTDASAT 448

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALA------- 583
              E +   +    + E+  +L  + +   L    +E   I ++++  +Q          
Sbjct: 449 KSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELET 508

Query: 584 ----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQE 635
                 +R R L +Q E+++K + +  +K E E ++ L   L     ++     +++ ++
Sbjct: 509 EQRLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQ 568

Query: 636 AMIE 639
            +IE
Sbjct: 569 ELIE 572


>gi|297664777|ref|XP_002810802.1| PREDICTED: protein Hook homolog 1-like isoform 1 [Pongo abelii]
          Length = 728

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 104/304 (34%), Gaps = 25/304 (8%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D             + ++  + 
Sbjct: 269 DDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQ 328

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      +R +++ L +  +          ++  +    +   +   +            
Sbjct: 329 KLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSE 388

Query: 481 SLREAALLLTLIN----HPAILQEQYQELAD---IRYDNNELQ--KLWSFLFSDFVEQKY 531
           S R   L   +      H A+L+E+ + +     ++  N EL+  ++     +       
Sbjct: 389 SKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTDASAT 448

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALA------- 583
              E +   +    + E+  +L  + +   L    +E   I ++++  +Q          
Sbjct: 449 KSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELET 508

Query: 584 ----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQE 635
                 +R R L +Q E+++K + +  +K E E ++ L   L     ++     +++ ++
Sbjct: 509 EQRLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQ 568

Query: 636 AMIE 639
            +IE
Sbjct: 569 ELIE 572


>gi|206601462|gb|EDZ37949.1| Putative DNA helicase [Leptospirillum sp. Group II '5-way CG']
          Length = 455

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 27/73 (36%)

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             L+  L+  P +L+++    +   +     +++   +     E     P  I  R+ ++
Sbjct: 25  KNLIWCLLRKPDLLRDESLSFSVEDFHFGPHKRIVQAMVDLDAEGVVPDPGMIANRMTDQ 84

Query: 545 GFGELLKQLDRQV 557
              E L  L   +
Sbjct: 85  SDREYLLDLTETM 97


>gi|170690557|ref|ZP_02881724.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia graminis C4D1M]
 gi|170144992|gb|EDT13153.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia graminis C4D1M]
          Length = 585

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/314 (9%), Positives = 84/314 (26%), Gaps = 23/314 (7%)

Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
                   D++    +     + +  +  +D            F   +     L +    
Sbjct: 86  DAMRASYADIIRQLQLFDRLSDRLAAANDDDVSVLDLHQASQLFRNTVNIVAQLRESELS 145

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
               +                +   +       R  +S  +R +   +      +     
Sbjct: 146 AAIAHAPNMADQNSTAARADSQTLAS-------RDRFSDGLRQQASAMVASAQLQSDRCT 198

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
           + +++  +             + LV   L     +  A L   ++    ++    +    
Sbjct: 199 QEFQQAVQRLAATSARHERWITGLVAVSLLFAWLVAHAFLGKHVLARLEVVSSNLRSGDP 258

Query: 508 IRYDN--------NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
               +        +E+ ++   +     +++         R  +     L+ +L +    
Sbjct: 259 ADEQHVSRMVKGRDEIGEMARAVEQFQDDRRQLAHAYAALREEKARQEALINELAQA--H 316

Query: 560 AGLWSATTEANIVDVRQGYQQALA-----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           + L  +   A+I  +  G    +      +      L R   ++   +A      EAE  
Sbjct: 317 SQLLQSEKLASIGQLAAGVAHEINNPVGFVNANLGTLQRYMADLLTALAAYERS-EAELI 375

Query: 615 AILISILHEVHIQI 628
           A   + L E+  +I
Sbjct: 376 AESRAALIELKREI 389


>gi|109108807|ref|XP_001094990.1| PREDICTED: centrosomal protein of 164 kDa isoform 2 [Macaca
           mulatta]
          Length = 1457

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 72/224 (32%), Gaps = 42/224 (18%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           +RL    +    E     +   + A+ +++    + L Q      + +   +  E  L  
Sbjct: 773 ERLCSSLEAKHQEVVSSLQKKIEEAQQKEEAQLQKCLGQVEHRVHQKAYHMAEYEQELSS 832

Query: 490 TLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
            L      ++ E  + L  ++    E Q++ +     +  ++     E+   L       
Sbjct: 833 LLREKRQEVEGEHERRLDKMK---EEHQQVMAKAREQYEAEERKQRAELLGHLTGE---- 885

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L++L R                    +  +Q    +KR   L R+  E E+++  +   
Sbjct: 886 -LERLQR--------------AHERELETVRQEQ--HKRLEDLRRRHREQERKLQDLELD 928

Query: 609 GE----------------AEKTAILISILHEVHIQIHQIESQEA 636
            E                 E        L +V  Q+  ++S+EA
Sbjct: 929 LETRAKDVKARLALLEVQEETARREKQQLLDVQRQV-ALKSEEA 971


>gi|148229072|ref|NP_001085070.1| myosin, heavy chain 6, cardiac muscle, alpha [Xenopus laevis]
 gi|59544117|gb|AAW88310.1| cardiac myosin heavy chain-alpha [Xenopus laevis]
          Length = 1934

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 89/273 (32%), Gaps = 14/273 (5%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
              +    +D     + E       + +  ++         I+ +       + +   L +
Sbjct: 1562 FNQLKSEIDRKIAEKDEEMEQVKRNNQRLVDALQTQLEAEIRSRNEALRVKKKMEGDLNE 1621

Query: 435  LFQKYITEHSGYGRYWKK-NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA--ALLLTL 491
            +  +    +       K   A H   K    +L  +      L +  ++ E    LL   
Sbjct: 1622 MEIQLSQANRSAAEAHKHLKAAHGSLKDIQIQLDDTMRANDDLKENSAIVERRNMLLQAE 1681

Query: 492  INHPAILQEQYQE---LADIRY--DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +     + EQ +    LA+      +  +Q L S   S   ++K    +    +L     
Sbjct: 1682 LEELRSILEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKTETD--LAQLQ-TEV 1738

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
             E +++       A            ++++    +  L +  + + +  +++++++ +  
Sbjct: 1739 EEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQQRLDEAE 1798

Query: 607  A---KGEAEKTAILISILHEVHIQIHQIESQEA 636
                KG  ++   L   + E+  ++   + + A
Sbjct: 1799 QIAMKGGKKQLQKLEGRVRELDNELEAEQKRNA 1831



 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 71/224 (31%), Gaps = 18/224 (8%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            +L+  +++ +     + R  K                  S+ + +  +K   +E   L T
Sbjct: 1480 KLKNAYEESLEHLETFKRENKNLQEEISDLTEQLGEGGKSIHELEKIRKQLEQEKMELQT 1539

Query: 491  LINHPAILQEQYQ------ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             +       E  +      +L   +  +   +K+      + +EQ     + +   L  +
Sbjct: 1540 ALEEAEASLEHEEGKILRAQLEFNQLKSEIDRKIAEK--DEEMEQVKRNNQRLVDALQTQ 1597

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E+  + +       +     E  I  + Q  + A   +K  +      ++I+ Q+  
Sbjct: 1598 LEAEIRSRNEALRVKKKMEGDLNEMEIQ-LSQANRSAAEAHKHLKAAHGSLKDIQIQLDD 1656

Query: 605  VTAKGE---------AEKTAILISILHEVHIQIHQIESQEAMIE 639
                 +           +  +L + L E+   + Q E    + E
Sbjct: 1657 TMRANDDLKENSAIVERRNMLLQAELEELRSILEQTERSRKLAE 1700



 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 75/240 (31%), Gaps = 33/240 (13%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              LR  Y +       Q  +  +              R + +    QR  +    K KL+
Sbjct: 1338 DLLREQYEEE------QEAKAELQRVLSKANAEVAQWRTKYETDAIQRTEELEEAKKKLA 1391

Query: 478  KKPSLREAALLLTLINHPAI-------LQEQYQELADIRYDNNELQKL------WSFLFS 524
            ++    E A+        ++         E    + D+   N     L      +  + S
Sbjct: 1392 QRLQEAEEAVEAVNAKCSSLEKTKHRLQNEIEDLMVDLERSNAAAAALDKKQRNFDKILS 1451

Query: 525  DFVEQKYFLPEEIHQRLCE------------RGFGELLKQLDRQVRDAGLWSATTEANIV 572
            ++ ++      E+   L E              + E L+ L+   R+             
Sbjct: 1452 EWKQKFEESQTELESSLKESRSLSTELFKLKNAYEESLEHLETFKRENKNLQEEISDLTE 1511

Query: 573  DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQ 630
             + +G +    L K  + L ++K E++  + +  A  E E+          +++  +I +
Sbjct: 1512 QLGEGGKSIHELEKIRKQLEQEKMELQTALEEAEASLEHEEGKILRAQLEFNQLKSEIDR 1571


>gi|29840551|ref|NP_829657.1| hypothetical protein CCA00794 [Chlamydophila caviae GPIC]
 gi|29834901|gb|AAP05535.1| hypothetical protein CCA_00794 [Chlamydophila caviae GPIC]
          Length = 373

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 63/210 (30%), Gaps = 14/210 (6%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           ++ +LQ L  +   + S       +  +   +     +L Q  L           +E++ 
Sbjct: 121 LQRQLQDLQSRLSKKESDICNLRAQLDKETVKVQKVLKLKQEELDSLIRRYAAMAQESSD 180

Query: 488 LLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL-PEEIHQRLCERG 545
           L  L+ H      +  + L      +       + +          L  E I  R  +  
Sbjct: 181 LAALVLHLRTESADLKRVLEKNTITS-------NAIIEKLRSNSELLHSETIIARQSQEA 233

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ- 604
              +++ L                   D+R   Q    L ++   L ++   ++  I   
Sbjct: 234 EKVVVESLRNYSEQLSKQLCEK---AQDLRDKDQTIAKLTQQVAELKQEIATLQIFITDN 290

Query: 605 -VTAKGEAEKTAILISILHEVHIQIHQIES 633
               + + +    L   L  +  QI  +++
Sbjct: 291 VANREQKRDVVEELNKKLAALKSQIESLQA 320


>gi|15643938|ref|NP_228987.1| chromosome segregation SMC protein, putative [Thermotoga maritima
            MSB8]
 gi|4981731|gb|AAD36257.1|AE001774_14 chromosome segregation SMC protein, putative [Thermotoga maritima
            MSB8]
          Length = 1170

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 76/227 (33%), Gaps = 24/227 (10%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + I D L +       E         +  +     G     +       KL       E 
Sbjct: 794  KKILDELNEKIFTLRAEVGNLLETKDRYEKEMRDTGKMIERIARETEDIKLQMTSLEEE- 852

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF--LFSDFVEQKYFLPEEIHQRLCE 543
                 + N+   ++E  +E+  ++    E+  ++    L     E+K    +E+  R+ E
Sbjct: 853  -----MENYRKFIREHEREIEHLK---KEMDSVFEAMKLHRSGKEEKMRELQEVENRMDE 904

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-----QQALALYKRFRLLSRQKEEI 598
                E  ++L   +    L    T   I ++ + +            ++   + RQ +++
Sbjct: 905  --LKEEKERLRNHLHQIDLALQETRLKIANLLEEFSGNEEDVEELDEEKLEEIYRQIKDL 962

Query: 599  EKQIA-----QVTAKGEAEKTAILISILHEVHIQIHQIE-SQEAMIE 639
            E +I       +TA  E EK       + +    + + +   E +IE
Sbjct: 963  ENKIKYLGPVDLTAIDEYEKLREEYEEILKQKEDLEEAKRKLEEIIE 1009



 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 87/235 (37%), Gaps = 19/235 (8%)

Query: 418 QKLRYYYSQAIRDRLQQL--FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK-- 473
           ++      + I ++  +L   +             ++      +K  S + + S +++  
Sbjct: 675 EQEMEETERQIAEKRDELASLKTEQENLKNQEALVQRELFELSRKSSSTKTVLSEILRSI 734

Query: 474 GKLSKKPSLREAALLLTLINHPAI---LQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
            +L ++    E  L+        +    ++ ++E+ +++ +   LQ+  +    +  ++K
Sbjct: 735 NQLQEEVENLEKLLVEYRAKEEGLNARREKIFEEIDELKQNRENLQRSLTEYSEELEKEK 794

Query: 531 YFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
               +E+++++       G LL+  DR  ++        E    +      Q  +L +  
Sbjct: 795 KI-LDELNEKIFTLRAEVGNLLETKDRYEKEMRDTGKMIERIARETEDIKLQMTSLEEEM 853

Query: 589 RLLSRQKEEIEKQIAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQ 634
               +   E E++I  +  + ++               +  L EV  ++ +++ +
Sbjct: 854 ENYRKFIREHEREIEHLKKEMDSVFEAMKLHRSGKEEKMRELQEVENRMDELKEE 908


>gi|27529702|dbj|BAA13206.2| KIAA0216 [Homo sapiens]
          Length = 2067

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 96/311 (30%), Gaps = 46/311 (14%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R        +   + L  +++  + E E++     ++       L+  +  + DQ  R  
Sbjct: 1606 RDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREK-----RELEGKLATLSDQVNRRD 1660

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +      RL++  ++     +               K    +L    L + + +   +++
Sbjct: 1661 FESE--KRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKN-QLEESEFTCAAAVK 1717

Query: 484  EAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY----------- 531
                +   I    + + +  +    +    + LQ+  + + +   E +            
Sbjct: 1718 ARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKA 1777

Query: 532  ---------FLPEEIHQRLCER-----GFGELLKQLDRQVRDAGLWSATT------EANI 571
                         ++  +L E         E L+ L  QV                EA I
Sbjct: 1778 AVAQASRDLAQINDLQAQLEEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKI 1837

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVH 625
             ++    +      KR   L+ + +E  +++ +           E E+   L   L +  
Sbjct: 1838 RELETRLEFERTQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTK 1897

Query: 626  IQIHQIESQEA 636
             ++ ++  +EA
Sbjct: 1898 EEMGELARKEA 1908



 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 93/335 (27%), Gaps = 17/335 (5%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 1474 RRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 1533

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1534 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1593

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E  L   
Sbjct: 1594 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELEGKLATL 1652

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1653 SDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKNQLEESEFT- 1711

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1712 ----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1767

Query: 609  GEA---------EKTAILISILHEVHIQIHQIESQ 634
                         + +  ++ ++++  Q+ +   +
Sbjct: 1768 MNELMKKHKAAVAQASRDLAQINDLQAQLEEANKE 1802



 Score = 37.2 bits (84), Expect = 10.0,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 89/292 (30%), Gaps = 36/292 (12%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             +      ++  VD   KR  +        E+       +   +   D +      Q ++
Sbjct: 1383 EWRLKYERAVREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADSEESQRALQQLK 1442

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNA---RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             + Q+L  +             +N    + + +             + KL ++   RE  
Sbjct: 1443 KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEEAQREKLQREKLQREKD 1502

Query: 487  LLLT-------LINHPAI-----------LQEQYQELADIRYDNNE-LQKLWSFLFSDFV 527
            +LL         +    +           L+ + Q+++     +   L K+   L     
Sbjct: 1503 MLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEA 1562

Query: 528  -----EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ------ 576
                 E++        Q L +     L  +++R  +       + +  + + RQ      
Sbjct: 1563 KVKDQEEELDEQAGTIQMLEQAKLR-LEMEMERMRQTHSKEMESRDEEVEEARQSCQKKL 1621

Query: 577  --GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
                 Q    Y+  + + R+K E+E ++A ++ +           +  ++  
Sbjct: 1622 KQMEVQLEEEYEDKQKVLREKRELEGKLATLSDQVNRRDFESEKRLRKDLKR 1673


>gi|326478631|gb|EGE02641.1| chromosomes protein 4 structural maintenance [Trichophyton equinum
            CBS 127.97]
          Length = 1431

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 84/234 (35%), Gaps = 24/234 (10%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + +   L+          +   +   +    +     +QR ++    + K S     REA
Sbjct: 938  RELETELKTTKDAIPKVETAIQKLQLEIDSAKRNLADTQRRVKELSEEHKPSAADEKREA 997

Query: 486  ALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFV---EQKYFLPEEIHQR- 540
            +L  T+      L+++ ++L +++     E+Q L   +          +    + + ++ 
Sbjct: 998  SLEKTI----KALEKEIEKLRSEMTGVEEEIQALQDKIMEVGGVRLRGQKAKVDGLKEQI 1053

Query: 541  --LCERGFGELLKQLDRQVRDAGLWSATTEAN------IVDVRQGYQQALALYKRFRLLS 592
              L +      + +   +        +  +A         D+ +  ++A    K    + 
Sbjct: 1054 SLLTDEVSNAEVSKSKNEKLRVKHEKSRADAEAELESVQEDIEKLNEEAKNQAKAVSGIK 1113

Query: 593  RQKEEIEKQIAQVTAK-----GEAEKTAILISILHEVHIQIHQ--IESQEAMIE 639
            ++ EE E+ +     +      E ++    ++    V I++     ESQ+A++E
Sbjct: 1114 QKTEEAEEALQTKQEELTALKTELDEKTAELNETRAVEIEMRNKLEESQKALVE 1167


>gi|301788021|ref|XP_002929427.1| PREDICTED: RB1-inducible coiled-coil protein 1-like [Ailuropoda
            melanoleuca]
          Length = 1593

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 34/311 (10%), Positives = 100/311 (32%), Gaps = 33/311 (10%)

Query: 355  RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            + +D + F     +      +        +  +     ++    + +   EI L++    
Sbjct: 906  QNKD-NEFALVKHEKEAVICLQNEKDQKLLEMENIMHTQNCEINELKQSREIVLEDLKKL 964

Query: 415  IKDQKLRYYYSQAIRD-----RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
              +   +    +          L++L       H+        + R   +K   +   + 
Sbjct: 965  HVENDEKMQLLRTELQCLEQSHLKELEDALHVRHTQEFEKVMTDHRVSLEKLKKENQQRI 1024

Query: 470  SLVKGKLSKKPSLREAALLLTLINHPAILQ---EQYQELADIRYDNNELQKLWSF----- 521
              ++   +     +E  L    +    +     +   ELA    + +E++ L        
Sbjct: 1025 DQIQESHATVIQEKEQQLEELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRAQQ 1084

Query: 522  ------LFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATT-----E 568
                  L     E       ++ Q++ +    +   L +L   +        +      E
Sbjct: 1085 KETLKSLLEQETENLRTEISKLKQKIQDNNENYQVGLAELRTLMTIEKDQCISELISRHE 1144

Query: 569  ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                 ++    +  +L+ +   +    + ++++IA++ +K +AE +A+      ++  Q 
Sbjct: 1145 EESDILKAELNKVTSLHHQAFEIE---KNLKEEIAELQSKLDAELSALEKQKDEKLTQQE 1201

Query: 629  HQIESQEAMIE 639
             +    EA+I+
Sbjct: 1202 EKY---EAIIQ 1209


>gi|294508904|ref|YP_003566115.1| conserved hypothetical protein containing phage/plasmid primase
          P4, C-terminal domain [Salinibacter ruber M8]
 gi|294342041|emb|CBH22707.1| conserved hypothetical protein containing phage/plasmid primase
          P4, C-terminal domain [Salinibacter ruber M8]
          Length = 716

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 13/52 (25%)

Query: 4  PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC 55
            + I  +L  +                      +Y A CP HD+ +PS   
Sbjct: 2  SSEPINKVLDRLDAVE-------------QTGSEEYVARCPAHDDHSPSLSV 40


>gi|293351677|ref|XP_002727824.1| PREDICTED: myosin 18a [Rattus norvegicus]
          Length = 2039

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 36/349 (10%), Positives = 91/349 (26%), Gaps = 31/349 (8%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   +  +  D   F +      
Sbjct: 1461 RRFDSELSQAHEETQREKLQREKLQREKDMLLAEAFSLKQQMEEKDLDIAGFTQKVVSLE 1520

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1521 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGSIQMLEQAKLRLEMEME 1580

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + + ++    +L +    K K  ++    E+ L   
Sbjct: 1581 RMRQTHSKEMESRDEEVEEARQSCQKKLRQM-EVQLEEEYEDKQKALREKRELESKLSTL 1639

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1640 SDQVNQRDFESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQLKNQLEESEFT- 1698

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1699 ----CAAAVKARKAMEVEMEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1754

Query: 609  GE-----------------------AEKTAILISILHEVHIQIHQIESQ 634
                                       +         E+  ++  ++SQ
Sbjct: 1755 MNELMKKHKAAVAQASRDMAQMNDLQAQLEESNKEKQELQEKLQALQSQ 1803



 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 41/342 (11%), Positives = 101/342 (29%), Gaps = 39/342 (11%)

Query: 332  YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391
             K ++ +   ++    +    ++   D D          +      ++  VD   KR  +
Sbjct: 1337 KKQMEAMDMEVMEARLIRAAEINGEVDDDDAG-----GEWRLKYERAVREVDFTKKRLQQ 1391

Query: 392  NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK----------YIT 441
                    E+       +   +   D        Q ++ + Q+L  +             
Sbjct: 1392 ELEDKMEVEQQNRRQLERRLGDLQADSDESQRALQQLKKKCQRLTAELQDTKLHLEGQQV 1451

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI---- 497
             +    +  ++      Q     +  +    K +  K   L EA  L   +    +    
Sbjct: 1452 RNHELEKKQRRFDSELSQAHEETQREKLQREKLQREKDMLLAEAFSLKQQMEEKDLDIAG 1511

Query: 498  -------LQEQYQELADIRYDNNE-LQKLWSFLFSDFV-----EQKYFLPEEIHQRLCER 544
                   L+ + Q+++     +   L K+   L          E++        Q L + 
Sbjct: 1512 FTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGSIQMLEQA 1571

Query: 545  GFG-ELLKQLDRQVRDAGLWSATTEANIVD------VRQGYQQALALYKRFRLLSRQKEE 597
                E+  +  RQ     + S   E           +RQ   Q    Y+  +   R+K E
Sbjct: 1572 KLRLEMEMERMRQTHSKEMESRDEEVEEARQSCQKKLRQMEVQLEEEYEDKQKALREKRE 1631

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +E +++ ++ +           +  ++      +   + M++
Sbjct: 1632 LESKLSTLSDQVNQRDFESEKRLRKDLKRTKALLADAQIMLD 1673



 Score = 37.2 bits (84), Expect = 8.0,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1779 LQAQLEESNKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFEK 1835

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   ++ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1836 TQVKRLESMASRLKENMEKLTEERDQRAAAENREKEQNKRLQRQLRDTKEEMSELARKEA 1895


>gi|119620091|gb|EAW99685.1| dynactin 1 (p150, glued homolog, Drosophila), isoform CRA_b [Homo
           sapiens]
          Length = 843

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 102/331 (30%), Gaps = 15/331 (4%)

Query: 330 AAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRE 389
              +  DL              L ++    +             L  E         ++E
Sbjct: 1   MQEQQADLQRRLKEARKEAKEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQE 60

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT-EHSGYGR 448
            E       +   +LEI          D     Y  + + ++  +L    +         
Sbjct: 61  VEALKERVDELTTDLEILKAEIEEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSSSE 120

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL--QEQYQELA 506
             +     +  +  +Q L      + +L ++ S  E+ +        A L  +E  + L 
Sbjct: 121 KQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVEMLT 180

Query: 507 DIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
           D   +  E +++L   +       +     + + R  E    E L     +VR+A     
Sbjct: 181 DRNLNLEEKVRELRETVGDLEAMNEMNDELQENARETELELREQLDMAGARVREAQKRVE 240

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE------KTAILIS 619
             +  + D +Q  ++   L    + ++R+    ++   +   +   E      K A   +
Sbjct: 241 AAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQEASVERQQQPPPETFDFKIKFAETKA 300

Query: 620 ILHEVHIQIHQIESQEA-----MIEGFGKMS 645
               + +++ Q+E  +A     ++  F   S
Sbjct: 301 HAKAIEMELRQMEVAQANRHMSLLTAFMPDS 331


>gi|114653464|ref|XP_001169405.1| PREDICTED: spectrin repeat containing, nuclear envelope 2 isoform 1
            [Pan troglodytes]
          Length = 6861

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 89/280 (31%), Gaps = 20/280 (7%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+         +   L      ++   + +   ++  N  D  + ++++LK C    + +
Sbjct: 1785 PELSELKKQYESVSDLFNTKKSVLQDHFSKLLNDQCKNFNDWFSNIKMNLKECFESSETK 1844

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            K      Q + D L    +    +         K    +         +     + +  +
Sbjct: 1845 KSVEQKLQKLSDFLTLEGRNSKIKQVDSVLKHVKKHLPKAHVKELISWLVGQEFELEKME 1904

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                                +E    L  +    ++ + L  +L +   + K        
Sbjct: 1905 SICQA-------------RAKELEDSLQQLLRLQDDHRNLSKWLTNQEEKWKGMEESGEK 1951

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
              L       L ++ ++    A L ++  E    +  +   ++  L  R++ L RQ  EI
Sbjct: 1952 TEL---FCQALARKREQFESVAQLNNSLKEYGFTEEEEIIMESTCLMDRYQTLLRQLSEI 2008

Query: 599  EKQIAQVTAKGEA---EKTAILISILHEVHIQIHQIESQE 635
            E++  +++   +    +    +I  + E+   +  + S E
Sbjct: 2009 EEE-DKLSPTEDQSFNDLAHDVIHWIKEIKESLMVLNSSE 2047


>gi|114653460|ref|XP_001170042.1| PREDICTED: spectrin repeat containing, nuclear envelope 2 isoform 4
            [Pan troglodytes]
 gi|114653462|ref|XP_001170060.1| PREDICTED: nesprin-2 isoform 5 [Pan troglodytes]
          Length = 6885

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 89/280 (31%), Gaps = 20/280 (7%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+         +   L      ++   + +   ++  N  D  + ++++LK C    + +
Sbjct: 1809 PELSELKKQYESVSDLFNTKKSVLQDHFSKLLNDQCKNFNDWFSNIKMNLKECFESSETK 1868

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            K      Q + D L    +    +         K    +         +     + +  +
Sbjct: 1869 KSVEQKLQKLSDFLTLEGRNSKIKQVDSVLKHVKKHLPKAHVKELISWLVGQEFELEKME 1928

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                                +E    L  +    ++ + L  +L +   + K        
Sbjct: 1929 SICQA-------------RAKELEDSLQQLLRLQDDHRNLSKWLTNQEEKWKGMEESGEK 1975

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
              L       L ++ ++    A L ++  E    +  +   ++  L  R++ L RQ  EI
Sbjct: 1976 TEL---FCQALARKREQFESVAQLNNSLKEYGFTEEEEIIMESTCLMDRYQTLLRQLSEI 2032

Query: 599  EKQIAQVTAKGEA---EKTAILISILHEVHIQIHQIESQE 635
            E++  +++   +    +    +I  + E+   +  + S E
Sbjct: 2033 EEE-DKLSPTEDQSFNDLAHDVIHWIKEIKESLMVLNSSE 2071


>gi|116008016|ref|NP_001036715.1| myosin heavy chain-like, isoform G [Drosophila melanogaster]
 gi|113194786|gb|ABI31171.1| myosin heavy chain-like, isoform G [Drosophila melanogaster]
          Length = 2160

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 35/226 (15%)

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            L+ L ++    ++   +  +K          + R  + +  +    K     E   L   
Sbjct: 1577 LRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQT 1636

Query: 492  INHPAILQEQYQE--------LADIRY---DNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            +    +  E  +E        L ++ +      E  +L           +     E   +
Sbjct: 1637 LADTRLDLEFKEEKLASLQRELEEMTFGGGTEEEFAQLR----------RSKNETERRAK 1686

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LLSRQKEEIE 599
              E    E+  Q+    +       T E    + R+  QQ     +  R    ++ + +E
Sbjct: 1687 EQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALE 1746

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE--------SQEAM 637
             Q+     + E E+  +L+   HE+  ++  +E        ++EA+
Sbjct: 1747 CQL-----ETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEAL 1787



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/284 (8%), Positives = 76/284 (26%), Gaps = 21/284 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE--IHLKNCINHIKDQ 418
              +R   +   ++   E   +    +K+          +                 +   
Sbjct: 1714 ETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSM 1773

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            + R    +   + L Q  ++ + ++    +  +          P + L++   ++ +L  
Sbjct: 1774 EDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIR--QLRNQLED 1831

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              S R        +      +   +        +   +        +     +    E+ 
Sbjct: 1832 AESAR-----SLAMKARQTAE--AELTEVQAMFDESHRARNDA--EERANAAHRDRAELQ 1882

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             ++ E             ++             ++V +   +   +      L  Q  E+
Sbjct: 1883 AQIEENEEEL-----GELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAEL 1937

Query: 599  EKQIAQVTAKGEAEKTA---ILISILHEVHIQIHQIESQEAMIE 639
            + ++  V   G+         L     E+  ++   ++  A +E
Sbjct: 1938 QHRLDNVENLGDPSMAMMSKRLELRTKELESRLELEQATRARLE 1981


>gi|15789609|ref|NP_279433.1| chromosome segregation protein [Halobacterium sp. NRC-1]
 gi|169235321|ref|YP_001688521.1| chromosome segregation protein [Halobacterium salinarum R1]
 gi|10579965|gb|AAG18913.1| chromosome segregation [Halobacterium sp. NRC-1]
 gi|167726387|emb|CAP13170.1| chromosome segregation protein [Halobacterium salinarum R1]
          Length = 1190

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 68/224 (30%), Gaps = 18/224 (8%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + +R+Q L               ++    RD++  +   +++     + ++      
Sbjct: 695 LERVAERIQGLEDDREDCRQEVREIDQRLDSARDRRQDATEQVRTIQADIEAAEADREAA 754

Query: 485 AALLLTLINHPAILQEQYQEL--------ADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
              +  L      LQ++ + +        A+I      +  + + + S   E       E
Sbjct: 755 VERIADLETRIEELQDEREAVDAEMQTVDAEIDAQQETIAAIEAEIESLEAELAESRIPE 814

Query: 537 IHQRLCERG-----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
           +     +           + +LD ++    L     E  + D++     A     R    
Sbjct: 815 LTAEKEDIEATVVDLEGRVDELDGELNSLTLEKEYAEDAVEDLQADVADA---ESRKADE 871

Query: 592 SRQKEEIEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             + E +   I   Q     +      L + L ++     + ++
Sbjct: 872 QARIEALNGDIEAKQAELAEKEAAVEDLEAELADLKRDREERKA 915



 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 4/149 (2%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           +QE+  ELADI  +   +   +  L +   ++K  L +   +R           +L  + 
Sbjct: 381 IQERRDELADIEAEIESVDTEFDELKAALADEKTALEDAKRER---NDHQREQDRLLDEA 437

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
           +      A  EA++ D R    +  A          +     +QI  V    + EK    
Sbjct: 438 KRRSEELADAEADLEDARAELPEVDATLDELADELEKATRNREQIVDVVEDLKQEKRQR- 496

Query: 618 ISILHEVHIQIHQIESQEAMIEGFGKMSG 646
              L  V  ++   + + A +E     SG
Sbjct: 497 QEDLAAVEDELSAAQEEYARLEAQADQSG 525


>gi|307126351|ref|YP_003878382.1| surface protein PspA [Streptococcus pneumoniae 670-6B]
 gi|306483413|gb|ADM90282.1| surface protein PspA [Streptococcus pneumoniae 670-6B]
          Length = 641

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 52/123 (42%), Gaps = 5/123 (4%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           +  L   +V +     ++  ++  +    E   ++ +   +         ++   +    
Sbjct: 98  YQLLLQKYVSESDGKKKKEIEKQADAAKKE--NEIKKAELNKIRQEIVVPSS-QQLEVTR 154

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQEA 636
           ++A     +   L ++ EE EK++ +   K +AE+     L + + E+  +++++E++  
Sbjct: 155 RKAEVAKAKEPGLRKRVEEAEKKVTEAKQKLDAERAKEVALQAKIAELENEVYRLETELK 214

Query: 637 MIE 639
            I+
Sbjct: 215 GID 217


>gi|301619360|ref|XP_002939061.1| PREDICTED: myosin-7-like [Xenopus (Silurana) tropicalis]
          Length = 1937

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 65/217 (29%), Gaps = 23/217 (10%)

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGK 475
            D   R    +  + +L Q  Q+                + + + +   + LM        
Sbjct: 1379 DAIQRTEELEEAKKKLAQRLQEAEEAVEAVNAKCSSLEKTKHRLQNEIEDLMVDLERSNA 1438

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
             +     ++      L       Q+  +  A++     E + L + LF            
Sbjct: 1439 AAAALDKKQRNFDKIL---SEWKQKFEESQAELESSQKEARSLSTELFKL---------- 1485

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                   +  + E L+ L+   R+              + +  +    L K  + L ++K
Sbjct: 1486 -------KNSYEESLEHLETFKRENKNLQEEISDLTEQLGESGKSIHELEKVRKQLEQEK 1538

Query: 596  EEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQ 630
             E++  + +     E E+     +   L ++  +  +
Sbjct: 1539 MELQSALEEAEGSLEHEEGKILRVQLELQQIKAEFER 1575



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/279 (10%), Positives = 93/279 (33%), Gaps = 17/279 (6%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                 +      L   D  + +   N        +A LE   ++    ++ +K       
Sbjct: 1565 ELQQIKAEFERKLSEKDEEFDQAKRNNQRAVDTLQASLEAETRSRNEALRVKKKMEGDLN 1624

Query: 427  AI------RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
             +       +R+    QK +    G  +  +       +     +   + + +     + 
Sbjct: 1625 EMEIHLSQANRIASEAQKQLKNLQGVLKDTQLQLDDTLRINEDLKENTAIVERRNTLLQA 1684

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             L E   L +++      ++  ++  ++   N  +Q L S   S   ++K    +    +
Sbjct: 1685 ELEE---LRSILEQTERSRKLAEQ--ELIETNERVQLLHSQNTSLINQKKKMEND--LSQ 1737

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            L      E +++       A            ++++    +  L +  + + +  +++++
Sbjct: 1738 LQGE-VEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQQ 1796

Query: 601  QIAQVTA---KGEAEKTAILISILHEVHIQIHQIESQEA 636
            ++ +      KG  ++   L + + E+  ++   + + A
Sbjct: 1797 RLDEAEQIAMKGGKKQLQKLEARVRELDNELEAEQKRNA 1835



 Score = 38.3 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 81/273 (29%), Gaps = 36/273 (13%)

Query: 386  WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
             +               +L   +K  +   + +K      +    RL++  +K       
Sbjct: 815  IQWNVRAFMGVKNWPWMKLYFKIKPLLKSAETEKEMQNMKEEF-QRLKEALEKSEARRKE 873

Query: 446  YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
                     + ++       L      +    +    R   L+   IN  A L+EQ + L
Sbjct: 874  LEEKMVSLLQEKN------DLQLQVQAEQDNLEDAEERCEQLIKNKINLEAKLKEQTERL 927

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE----------------RGFGEL 549
             D    N EL      L  +  E K    +++   L +                     L
Sbjct: 928  EDEEEMNAELTAKKRKLEDECSELKK-DIDDLELTLAKVEKEKHATENKVKNMTEEMAAL 986

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA-- 607
             + + +  ++        +  + D++    +  +L K    L +Q +++E  + Q     
Sbjct: 987  DEIIAKLTKEKKALQEAHQQALDDLQAEEDKVNSLTKSKAKLEQQVDDLEGSLEQEKKVR 1046

Query: 608  ----------KGEAEKTAILISILHEVHIQIHQ 630
                      +G+ + T   +  L     Q+ +
Sbjct: 1047 MDLERVKRKLEGDLKLTQESLMDLENDKQQLEE 1079


>gi|283782037|ref|YP_003372792.1| hypothetical protein Psta_4284 [Pirellula staleyi DSM 6068]
 gi|283440490|gb|ADB18932.1| hypothetical protein Psta_4284 [Pirellula staleyi DSM 6068]
          Length = 293

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 57/203 (28%), Gaps = 26/203 (12%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL- 491
                  + +     R   K          +     S+  K +       REAA++  + 
Sbjct: 67  GSADSSQVVKAPSTTRAKNKEQGREAPTRAAITKPGSAAAKSRPVSITPEREAAVMTFVQ 126

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL---CERGFGE 548
           +NHP + +                      L +     +    E+  + L    ER    
Sbjct: 127 LNHPELAE----------------------LLTHLKSSQTREYEQAIRELFRASERLAAT 164

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             +   +   +  +W+A ++  ++  R     +  L    + L  Q+      +      
Sbjct: 165 QDRDQQQYQLELAVWTAQSKIQLISARLKMNDSATLRDELKSLLEQQLSARIALLSFERA 224

Query: 609 GEAEKTAILISILHEVHIQIHQI 631
              ++   +   +  +     ++
Sbjct: 225 KITQRMEKIDQQIENLEASREEM 247


>gi|260494907|ref|ZP_05815036.1| replicative DNA helicase [Fusobacterium sp. 3_1_33]
 gi|260197350|gb|EEW94868.1| replicative DNA helicase [Fusobacterium sp. 3_1_33]
          Length = 446

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/159 (8%), Positives = 50/159 (31%), Gaps = 4/159 (2%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K        E AL+  +  +  +  E    +    +   E   ++  +   + E K    
Sbjct: 7   KKIPHSLEAERALIGGIFYNQDLFDEIRDIVKAEDFYKVEHSVIYEAIEKVYSENKGIDG 66

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I + + +       +++ + + D      ++   +        +  A+ +R   +  +
Sbjct: 67  ILIEEEIKKSSSKNK-EEILQVLSDILDEITSSYNLLEYAN--LIKEKAMLRRLGNVGVE 123

Query: 595 KEEIE-KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             ++    +       +  +  +L    + +   I  ++
Sbjct: 124 ITQLAYNDVRVAEEIIDEAEGMVLNLSKNILKNSIVDMK 162


>gi|149028657|gb|EDL83998.1| similar to Sarcoma antigen NY-SAR-41 (predicted), isoform CRA_a
           [Rattus norvegicus]
 gi|149028658|gb|EDL83999.1| similar to Sarcoma antigen NY-SAR-41 (predicted), isoform CRA_a
           [Rattus norvegicus]
          Length = 765

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/253 (10%), Positives = 84/253 (33%), Gaps = 4/253 (1%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ +       +E ++LE  + +     +++ +       I D+ +   +K         
Sbjct: 152 RQAKLEIDQYKEELSKLEKEITHLKRDGENKSIHLSQLDMILDQTKTELEKKTNSVKELE 211

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
           R          +    +  +++ L       K +LR+   L  ++    +  E  ++   
Sbjct: 212 RLQHHTETELTETTQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTT 269

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
           I+    EL++    +     E          +    +     +  LD  +R+        
Sbjct: 270 IKDLTAELRECKMEIEDKKQELLEMNQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 329

Query: 568 EANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
              +   + +   +     K+   L+ + +  ++Q+ +        +   +  +  E+  
Sbjct: 330 IIKLEGTLEKSELELKECNKQAESLNEKLQNAKEQLREKEFIMLQNE-QEISQLKKEIER 388

Query: 627 QIHQIESQEAMIE 639
              +++  E++++
Sbjct: 389 TQQRMKEMESVMK 401


>gi|148697212|gb|EDL29159.1| dystrophin, muscular dystrophy [Mus musculus]
          Length = 2853

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 76/233 (32%), Gaps = 28/233 (12%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            + L +  +K   +     +  K        K  S R   + L+  +      + E  +  
Sbjct: 1699 ELLDESEKKKPQQKEDILKRLKAEMNDMRPKVDSTRDQAAKLMANRGDHCRKVVEPQISE 1758

Query: 490  T-----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                   I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E 
Sbjct: 1759 LNRRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMSED 1818

Query: 545  G---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQA 581
                  ELL++ D   +         E  I                        +   Q 
Sbjct: 1819 NEGTVNELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQW 1878

Query: 582  LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                ++   L +  +EIEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1879 YQYKRQADDLLKCLDEIEKKLASLPEPRDERKLKEIDRELQKKKEELNAVRRQ 1931


>gi|114587775|ref|XP_001136134.1| PREDICTED: TATA element modulatory factor 1 isoform 1 [Pan
           troglodytes]
          Length = 1004

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 80/261 (30%), Gaps = 33/261 (12%)

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI---TEHSGYGRYWKKNARHRDQKGP 462
              K  I +IK++      S    D L++  ++      E     +    N+    +   
Sbjct: 522 DAAKKEIKNIKEELATRLNSSETADLLKEKDEQIRGLMEEGEKLSKQQLHNSNIIKKLRA 581

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE-QYQEL----ADIRYDNNELQK 517
             +  ++ + K     K    E   L  +++    +++   + +    + +     +L  
Sbjct: 582 KDKENENMVAKLNKKVKELEEELQHLKQVLDGKEEVEKQHRENIKKLNSMVECQEKDLGH 641

Query: 518 L---------------------WSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLD 554
           L                     +  L            E     L        EL   L+
Sbjct: 642 LQVDMDELEEKNRSIQAALDSAYKELTDLHKANAAKDSEAQEAALSREMKAKEELSAALE 701

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALAL-YKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           +   +A     T    + D+R   Q+      ++   L  +  E+++++ +   +   E 
Sbjct: 702 KAQEEARQQQETLAIQVGDLRLALQRTEQAGARKEDYLRHEIGELQQRLQEAENR-NQEL 760

Query: 614 TAILISILHEVHIQIHQIESQ 634
           +  + S    +  QI  +++ 
Sbjct: 761 SQSVSSTTRPLLRQIENLQAT 781


>gi|112418792|gb|AAI22136.1| Zgc:153080 [Danio rerio]
          Length = 419

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 39/103 (37%), Gaps = 4/103 (3%)

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-SRQK 595
             +RL +    ++++   ++++D    +   + +    +       +   R   +   + 
Sbjct: 80  FKERLSKSEVQQMIQDRIKKIQDIKHSAELRKKSTEREKASTVGLFSDLLRSIEICQAEL 139

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVH---IQIHQIESQE 635
            E+ K+  +   K + E    L   ++E+     ++  + S E
Sbjct: 140 LEMIKEKQKAAEKQDEELIQELQQEINELKMSNSELDHLSSTE 182


>gi|85057494|ref|YP_456410.1| hypothetical protein AYWB_214 [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789599|gb|ABC65331.1| conserved hypothetical protein [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 277

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 11/152 (7%)

Query: 496 AILQEQYQELADIRYDNNELQKLW----SFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
            ++QE  + +       N  Q L       L    VE K    E+   +  +    EL+ 
Sbjct: 63  QLVQEIDKAIDKYDEFINNYQGLKDNWEQELTKVEVELKTLYEEQKITQEQKEKIKELIN 122

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           Q + ++ +       TE NI  +++  +Q            ++ +  EKQIA+     E 
Sbjct: 123 QTETKINEIKTQKQETENNINALKEQLKQKEEALANK---EKEIKLTEKQIAESNDLTEK 179

Query: 612 EKTAI----LISILHEVHIQIHQIESQEAMIE 639
           +K       L      +  QI +I+SQ  ++E
Sbjct: 180 QKLRTKLDILYDEKIALVKQITEIKSQIGLLE 211


>gi|73980628|ref|XP_540111.2| PREDICTED: similar to dystrobrevin, beta isoform 1 [Canis
           familiaris]
          Length = 670

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +        E AL+ + +             + +   + E + +  +   
Sbjct: 355 PTPTKRLQYSQDIPSHLADEHALIASYVARLQHCARVLDSPSRL---DEEHRLIARYAAR 411

Query: 525 DFVEQKYFL--PEEI-HQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E       P ++       +   +L+ +L+ + R+            E       + 
Sbjct: 412 LAAEAGNMTRPPADLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEK 471

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 472 AQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEGLMKLLKE-EEQKQAAQAT 529


>gi|332208869|ref|XP_003253534.1| PREDICTED: centrosomal protein of 164 kDa [Nomascus leucogenys]
          Length = 1422

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 82/293 (27%), Gaps = 51/293 (17%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                      ++ I  S            E       ++           +      +L
Sbjct: 677 EQKNRQMLEQLKEEIEASEKSEQAALNAAKEKALQQLREQLEGERKEAVAMLEKEHSAEL 736

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                    +RL    +    E     +   + A+ +++    + L Q      + +   
Sbjct: 737 ---------ERLCSSLEAKHREVVSSLQKKIEEAQQKEEAQLQKCLGQVEHRVHQKAYHV 787

Query: 481 SLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           +  E  L   L      ++ E  + L  ++    E Q++ +     +  ++     E+  
Sbjct: 788 AEYEHELSSLLREKRQEVEGEHERRLDKMK---EEHQQVMAKAREQYEAEERKQRAELLG 844

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L        L++L R                    +  +Q    +KR   L R+  E E
Sbjct: 845 HLTGE-----LERLQR--------------AHERELETVRQEQ--HKRLEDLRRRHREQE 883

Query: 600 KQIAQVTAKGE----------------AEKTAILISILHEVHIQIHQIESQEA 636
           +++  +    E                 E        L +V  Q+  ++S+EA
Sbjct: 884 RKLQDLELDLETRAKDVKARLALLEVQEETARREKQQLLDVQRQV-ALKSEEA 935


>gi|319937061|ref|ZP_08011470.1| hypothetical protein HMPREF9488_02304 [Coprobacillus sp. 29_1]
 gi|319807839|gb|EFW04424.1| hypothetical protein HMPREF9488_02304 [Coprobacillus sp. 29_1]
          Length = 547

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 53/180 (29%), Gaps = 22/180 (12%)

Query: 2   NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
            +  + I  +   + +   +  Q     +   +     Y                     
Sbjct: 6   RFSDEQIS-VANQVNLVEYLRQQGETLTKSGKDMRWNRYT-------------SVTIRGN 51

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRL---AAIAGVPLPVVDPKIEKKEKIQTDL 117
            YY +     G  + FL    G +F ++++ L   A   G+ +   D   E++ K +  +
Sbjct: 52  QYYKWKTQEGGYPIQFLKEFYGYNFKQAMELLLSFANDTGMIV---DVHPEEEVKKEFIM 108

Query: 118 IRLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
               +     + + L     DK +     ++G+           +       +  H  ++
Sbjct: 109 PERNDSMRRVYGYLLNGRCIDKEVLNAFVQKGLIYEDAVYHNAVFVGYDEEGVPRHAHKR 168


>gi|301614628|ref|XP_002936790.1| PREDICTED: switch-associated protein 70 [Xenopus (Silurana)
           tropicalis]
          Length = 563

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 67/213 (31%), Gaps = 18/213 (8%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           +  R + + L +K + E     +  K+     + K     +M+  L +         R+ 
Sbjct: 293 KEARQKRRALRKKLLAEQEEMEKKMKELQVANETKQQELEVMRKELKEAADRAMEEERKR 352

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-R 544
               T +                R+     ++L   +      Q      E+ Q L   R
Sbjct: 353 QETQTQLQD--------------RFQTEMERELL--IRRQMEAQVAQKSNELQQNLNRVR 396

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              E+ ++L   + D        E   +   +  ++  A       L +++E   K + +
Sbjct: 397 ELEEMYRKLQEALDDEKQARQEEENARLHQARLLEEEAAKRAMLEKLHKEQETAIK-MTE 455

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
              K   +        L E   Q+ Q+E +  +
Sbjct: 456 AEKKELEQIREEKEKALQEAMQQLEQLEKERIL 488


>gi|164428468|ref|XP_965762.2| hypothetical protein NCU00622 [Neurospora crassa OR74A]
 gi|157072158|gb|EAA36526.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1444

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/126 (11%), Positives = 48/126 (38%), Gaps = 11/126 (8%)

Query: 525  DFVEQKYFLPEEIHQRL-----CERGFGELLKQLDRQVRDAGLWSATT---EANIVDVRQ 576
             +V+    + +++ ++L           E + +L+ +V      +      E     ++ 
Sbjct: 1165 HYVKGTEKMLKQLKEQLTRYKTENSRLKEQIVELEDKVGGETGGTGAPADWETERESLQG 1224

Query: 577  GYQQALALYKR-FRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIES 633
               +  A  +R    L +Q + + +++  V  + ++    +      L      + +++ 
Sbjct: 1225 QVSELQAELQRTASQLDQQLKSLREELEDVRQERDSAAHASDDASRRLEATKKDLEELQH 1284

Query: 634  QEAMIE 639
            + A++E
Sbjct: 1285 ENALLE 1290


>gi|145551827|ref|XP_001461590.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429425|emb|CAK94217.1| unnamed protein product [Paramecium tetraurelia]
          Length = 722

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 90/229 (39%), Gaps = 4/229 (1%)

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             +  +  I+ +  +   ++ I  + Q+  +          +  +K    + ++   + L
Sbjct: 139 EYELKMQEIRLENEKKQ-AEEIAKQQQRDLELQRKRAEQEEQRKQKELEKQQKREQEEEL 197

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY--DNNELQKLWSFLFS 524
            +  L + +L +K  L+   L        A  +++ ++    +    N E Q++ S L  
Sbjct: 198 QRQKLKEMELKEKERLKLEELKQKEREEEAKKKDEERKAIQEKLRKQNEENQRIQSELLE 257

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
              ++     E+  + L E+   +  +    ++++        + N  ++++  ++    
Sbjct: 258 KRKQEMELKAEQRRKALEEQKLKKKQEAELARLQNEERIQQAKQRNEAELQK-LKEDFER 316

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             +   + +++ E EK+      + EAEK + L   + E + Q+ Q + 
Sbjct: 317 KIKLSEVKQKQYEEEKRRKFEQQRKEAEKHSELFQKVIEQNNQLEQEKK 365


>gi|219848614|ref|YP_002463047.1| MutS2 family protein [Chloroflexus aggregans DSM 9485]
 gi|219542873|gb|ACL24611.1| MutS2 family protein [Chloroflexus aggregans DSM 9485]
          Length = 820

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 67/264 (25%), Gaps = 16/264 (6%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
                       P ++       +     I D++            +  + +   T    
Sbjct: 358 LLALMAQAGMQIPADQPSRLPVFQYIFADIGDEQSIEQSLSTFSSHMANIIRVLQTLTEA 417

Query: 446 YGRYWKKNARH-RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI----------NH 494
                    +   D + P+  ++   L  G    + S    A++  L+          ++
Sbjct: 418 QSFPAAPTDQALFDYRRPAALVLFDELGAGTDPVEGSALARAIIGRLLELGVLAVATTHY 477

Query: 495 PAILQEQYQ----ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           P +    Y     E A + +D   L   +                     L      +  
Sbjct: 478 PELKAFAYATPGVENASVEFDVETLAPTYRLSIGVPGHSNALAIAARLG-LDPALIEQAR 536

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
             +DR         A  +       +  Q+A  L         +    ++  A       
Sbjct: 537 SFIDRNEAQVEDLLAGIQRERAAATEALQRAEELRADAEKYRARLAAEQQAFAAEREVAL 596

Query: 611 AEKTAILISILHEVHIQIHQIESQ 634
           A     + + L EV  Q+ ++  +
Sbjct: 597 AAARQEIEAELREVRQQLRRLREE 620


>gi|261198338|ref|XP_002625571.1| RNA polymerase Rpb1 C-terminal repeat domain-containing protein
           [Ajellomyces dermatitidis SLH14081]
 gi|239595534|gb|EEQ78115.1| RNA polymerase Rpb1 C-terminal repeat domain-containing protein
           [Ajellomyces dermatitidis SLH14081]
          Length = 1422

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 41/400 (10%), Positives = 115/400 (28%), Gaps = 36/400 (9%)

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
           N+    +    + L +   +   ++         N  S            +       + 
Sbjct: 284 NNTNKEIEDPPQPLRHPSPSAAEIRLPSPSPSELNPRSNP---------AAAHHYLHGHP 334

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
            + + +    Y   ++      ++   +G      AA         +  P   +    + 
Sbjct: 335 PAPISSPHYSYGSPVVHPYVHPMIPPHNGASFDPHAASNMAVTAPSYHTP---MRSSTMD 391

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
               P    R   +T++ +   ++    D    RE         +               
Sbjct: 392 SPYSPYHHARRSSRTSYGRGYADTYYNNDYGPVREPAPVQPPVIENGKSASNG------- 444

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                     + ++  R+Q +          Y     + +    +    +   + SL++ 
Sbjct: 445 -------EGLNISLLSRIQSIIPDIGQLVISYRDQQTQLSAREAEHKQIEAQHEESLMRK 497

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +        +A +  T         +    ++++R +   LQ+    +     + +    
Sbjct: 498 EYY--IEALQAQMQKTANESAKECSKLKSRISELRLELGGLQEKQKDIEESLADAQKEND 555

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E    +L E    +L + +D   R         E  +   R+  ++AL   K+   L   
Sbjct: 556 E--LSQLRE----DLQEDIDNLQRAIEDEKEAHEEELAKQREQEKEALVNQKQE--LEGY 607

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +EI+ +  ++ A+    +   L     ++  ++   + +
Sbjct: 608 FQEIKNEDDRLAAEQLKAREQELTVERDKLKAELETEKQE 647


>gi|226324390|ref|ZP_03799908.1| hypothetical protein COPCOM_02171 [Coprococcus comes ATCC 27758]
 gi|225206838|gb|EEG89192.1| hypothetical protein COPCOM_02171 [Coprococcus comes ATCC 27758]
          Length = 691

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR---------LLSRQKEEIEKQIAQ 604
            +   + G+   T + ++ D+    ++  A   +            L +  +++EKQ+ +
Sbjct: 604 MKYNEEHGITPQTIKKSVRDLISISKKVAAEEMKLEKDPESMSAAELEKLIKKLEKQMKK 663

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIE 632
             A+   E  A L   L E+   ++++E
Sbjct: 664 AAAELNFEAAAELRDKLIELKKHLNEME 691


>gi|218264231|ref|ZP_03478103.1| hypothetical protein PRABACTJOHN_03793 [Parabacteroides johnsonii
          DSM 18315]
 gi|218222186|gb|EEC94836.1| hypothetical protein PRABACTJOHN_03793 [Parabacteroides johnsonii
          DSM 18315]
          Length = 60

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          ++ +   I I   +    ++   R+  +      W   PF +E+T SF  +  +  ++ F
Sbjct: 3  LEQIRQ-ISIVGFLENLGHMPVSRKGNDV-----WFRSPFRNERTASFKVDTQRNVWFDF 56


>gi|196229217|ref|ZP_03128082.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
 gi|196226449|gb|EDY20954.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
          Length = 1116

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 46/408 (11%), Positives = 100/408 (24%), Gaps = 35/408 (8%)

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
            A        R            L +   DV  + Q   +  ++ +    T         
Sbjct: 55  RARYNAASDGRGQTSGRDKKSYCLCDTQEDVNGVPQFAREGGITYIALEFTWPDGETCET 114

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFE 372
              RI    D +       +  I   L          F L   G      ++ +    + 
Sbjct: 115 WGMRIEYA-DTETQTPEEEFFRIPARLERSDFVTADGFALELDGF--RLLLKKHDGETYR 171

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-------IKDQKLRYYYS 425
            +      L D L                                    IK + +R  Y+
Sbjct: 172 NVTEYRKRLADHLNFHRETVDFLMPSAMSFAFLPKFDEFCRRYILQAEDIKTEPVRQSYA 231

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             +         +   +        ++      +     R +++   +     + +  E 
Sbjct: 232 SYLSITADLAKLRDKRDRLERVVSTQQELEDATRDSDVYRFLEAEFRREAARAENTELEK 291

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            L           +E    +        +L+ L     + F ++   L  E+  R+    
Sbjct: 292 KLAEIDRRQARQREEYDSVIETFATKTQDLESLK----NLFRDEGGTLLLELADRIRAAT 347

Query: 546 FG-ELLKQLDRQVRDAGLWSATTEANIVDVRQG------------YQQALALYKRFR--L 590
              E L+++ + V +                               + AL + +  R   
Sbjct: 348 AKIEQLQRIGKTVEEEKARRLRLATAFQKEAAAFLAERNSGKTAELEHALTILREARPDD 407

Query: 591 LSRQKEEIEKQIA------QVTAKGEAEKTAILISILHEVHIQIHQIE 632
           L     ++   I       + + KGE+E        L  +  Q+  ++
Sbjct: 408 LKSALHQLALAIRGVAERLRTSIKGESETYQKTKGELQGLQEQLRNLD 455


>gi|156538627|ref|XP_001607614.1| PREDICTED: similar to dynactin [Nasonia vitripennis]
          Length = 1269

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 95/294 (32%), Gaps = 23/294 (7%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               D  +    Y     +      +  +D     E         ++  E          
Sbjct: 264 QEARDAHAAREQYQDEMADLAETVEMATLDKEMAEEKAETLQIELEQLKEKLEE-----Q 318

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            I  + LR      + D++        T      +  ++NAR R+     + L      +
Sbjct: 319 TIDLEILRN----EMSDKMSGGSAPTGTSSFEVKQLEQQNARLRETLVRMRDLSAHEKHE 374

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADI--RYDNNELQKL-WSFLFSDFVEQK 530
            +  +K   ++ + +L L      L  + +E+              L    +  +  E+K
Sbjct: 375 FQKLQKDLEQKKSEILELSRTKEKLSARVEEMERQIADLQEQVDAALGAEEMVENLGERK 434

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             L E++          E +  L+     +   + +++   +++R+    ALA     R 
Sbjct: 435 MALEEKV------AELEEAVTDLEALQDMSDQLAESSKELEMELREELDMALAA---ARD 485

Query: 591 LSRQKEEIEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
             RQ++   + +   ++T     E T  L     E+  ++   ES  A  +G G
Sbjct: 486 AQRQRDAALETLSDREMTITKFRELTQKLQEQCLELQQRLQSSESTNAAAKGAG 539



 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 87/264 (32%), Gaps = 24/264 (9%)

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
                + + +E  L +     +++ L+    + + +R++ L  K + +      + K   
Sbjct: 178 MGPSTQSSTMEEKLTHLQLAQENENLKAQ-IRDLSERIEILRVKRMQDKERMKDFEKLKL 236

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
           +         ++M+S     +  ++              +   + +  + +     D   
Sbjct: 237 QLEQLIEFKTKVMESQASLQRELQRARQEARDAHAAREQYQDEMADLAETVEMATLD--- 293

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIV 572
                  +  +  E      E++ ++L E+      L  ++  ++      + T+   + 
Sbjct: 294 -----KEMAEEKAETLQIELEQLKEKLEEQTIDLEILRNEMSDKMSGGSAPTGTSSFEVK 348

Query: 573 DVRQGYQQALALYKRFRLL-----------SRQKEEIEKQIAQVTAKGEA--EKTAILIS 619
            + Q   +      R R L            +  E+ + +I +++   E    +   +  
Sbjct: 349 QLEQQNARLRETLVRMRDLSAHEKHEFQKLQKDLEQKKSEILELSRTKEKLSARVEEMER 408

Query: 620 ILHEVHIQIHQIESQEAMIEGFGK 643
            + ++  Q+      E M+E  G+
Sbjct: 409 QIADLQEQVDAALGAEEMVENLGE 432


>gi|114550714|ref|XP_001152852.1| PREDICTED: uncharacterized protein KIAA0562 isoform 3 [Pan
           troglodytes]
          Length = 926

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 35/132 (26%), Gaps = 5/132 (3%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
               + +         L   ++      P        +  +   L  L   +      + 
Sbjct: 153 DPADFSDESNTASREKLIDHYLGHNSEDPALEGTYARKSDYISPLDDLAFDMYQDPEVAQ 212

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILISILH 622
                    R+  Q+    Y +   L +   +++K   ++ +   +           +  
Sbjct: 213 IIRKLDERKREAVQKERYDYAKK--LKQAIADLQKVGERLGRYEVEKRCAVEKEDYDLAK 270

Query: 623 EVHIQIHQIESQ 634
           E   Q+ Q  ++
Sbjct: 271 EKKQQMEQYRAE 282


>gi|109492337|ref|XP_001081765.1| PREDICTED: caspase recruitment domain family, member 14-like
           [Rattus norvegicus]
          Length = 999

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 61/172 (35%), Gaps = 26/172 (15%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQK-----LWSFLFSDFVEQKYFLPEEIH 538
           E   L   +   + L+ + +EL  ++ +N +L+      +   +    +++     +E+ 
Sbjct: 243 ERESLERSLKMASDLEPEGEELNRLKEENEKLRSMTFSLVEKDILEQSLDEARESKQELV 302

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R+       L ++     R    +    E  ++  R+         ++  +L  Q  E+
Sbjct: 303 DRIHS-----LRERAVAAERQQKQYWEEKEQTLLQFRKTQVDCELYKEKMTMLQGQVAEL 357

Query: 599 EKQIAQVTAKGEAEKTA----------------ILISILHEVHIQIHQIESQ 634
           +K+  Q     +  +                   L   + E+  Q+ +++++
Sbjct: 358 QKERDQAYTARDRAQMEISQRLVEKDALRRRVFELTEQVCELRTQLRRLQAE 409


>gi|5901822|gb|AAD55419.1|AF181633_1 EG:118B3.2 [Drosophila melanogaster]
          Length = 949

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 64/213 (30%), Gaps = 28/213 (13%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + + +    LFQ          R  +K    R Q    Q L+     +       S RE 
Sbjct: 286 ERLAEEKDVLFQSLC-------RQTEKLNESRTQISTLQELLLRDTKQPAPEVSASEREQ 338

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            LL        +++   +E   +     EL    + +                 +L  + 
Sbjct: 339 KLL-------DLIKTSQEEREAVLLKQEELGAELAEMKQAREAG----------QLELQR 381

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR----QKEEIEKQ 601
             E +  LD Q+  A       EA      +   Q      R   L      + EE+E  
Sbjct: 382 QRERIALLDSQLDAANAERRQGEAQFSQAMEEISQRAIEISRLSTLLENARSKIEELEAD 441

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +++      +E   +       +  ++ +++ Q
Sbjct: 442 LSRGDKTDLSEVLDVARKEKDALEERVAELQDQ 474


>gi|83718996|ref|YP_442543.1| chromosome segregation protein SMC [Burkholderia thailandensis
           E264]
 gi|257138752|ref|ZP_05587014.1| chromosome segregation protein SMC [Burkholderia thailandensis
           E264]
 gi|83652821|gb|ABC36884.1| chromosome segregation protein SMC [Burkholderia thailandensis
           E264]
          Length = 1170

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 67/212 (31%), Gaps = 22/212 (10%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAAL 487
              ++ L ++   +            R        SQ L +      + +++    +  +
Sbjct: 663 AQEIENLTRQVRAQALLSDEAKSAAIRAEAAHTQASQALTEVRAQAERATQRVHALQMDV 722

Query: 488 LLTLINHPAILQ---EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           L     H    Q   +  +EL +I     E + L +       E+      E+  R  + 
Sbjct: 723 LKLTQAHERYTQRSTQIREELEEIGAQIEEQRALRAE-SEANFERHDAELAELQARFEDN 781

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                 + LD  + +A            + R+  + A       R  + + +E+++ I  
Sbjct: 782 QLA--FESLDETLTNAR----------QEARELERAATDARFAARQSANRIDELKRSIQV 829

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                  E+   + + L +   ++  I  Q A
Sbjct: 830 AH-----EQAERVAASLEDARAELETINEQTA 856


>gi|332367147|gb|EGJ44883.1| cell division protein Smc [Streptococcus sanguinis SK1059]
          Length = 1178

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 43/373 (11%), Positives = 107/373 (28%), Gaps = 59/373 (15%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             I    D +        +  D+    +  G   +   +      +       +      
Sbjct: 102 RHIYRSGDSEYKIDGKKVRLRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIF 161

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK---------------DQK 419
              +  L     ++ETE++   T D    LE  +    + +K               D +
Sbjct: 162 EEAAGVLKYKTRRKETESKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQ 221

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y   +  +L    ++            ++ A +  ++   +   Q+   K     +
Sbjct: 222 RRELYLDVLVAQLTANKERLTQAEEDLTNIQQELAAYYSKRDELEVENQTLKAKRHELNQ 281

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDN-----------NELQKLWSFL--FSDF 526
               +     +L+    ++ +  +++   + ++             L  L   L      
Sbjct: 282 TLSDDQ---ASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLTQIESN 338

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           +E K     +I  +L +       + +     +   +S   +  I  +R+   Q + L +
Sbjct: 339 IEDKQAELSKIAAKLSDNE-----ESIAALEAELADFSDDPDQLIEHLRE---QYVKLMQ 390

Query: 587 RFRLLSRQKEEIEKQIA--------------------QVTAKGEAEKTAILISILHEVHI 626
               LS     +E Q+A                    + +   E      L      +  
Sbjct: 391 EEANLSNDLTSLESQLASELKLAESKKADYAKLQADLEASQTQEQAGLEELEIARQALKN 450

Query: 627 QIHQIESQEAMIE 639
            ++  +SQ  ++E
Sbjct: 451 LLNDYQSQIQLVE 463



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 97/285 (34%), Gaps = 18/285 (6%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             +  +  ++V  L        +  E+ +    +  A      +  + +   +  R+  +
Sbjct: 221 QRRELYLDVLVAQLTANKERLTQAEEDLTNIQQELAAYYSKRDELEVENQTLKAKRHELN 280

Query: 426 QAIRDRLQQLFQKYIT----EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Q + D    L +        E        + +     ++   +RL   S    ++     
Sbjct: 281 QTLSDDQASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLTQIESNIE 340

Query: 482 LREAALLLTLINHPAILQEQYQELADI-----RYDNNELQKLWSFLFSDFVE--QKYFLP 534
            ++A L          L +  + +A +      + ++   +L   L   +V+  Q+    
Sbjct: 341 DKQAELSKIAAK----LSDNEESIAALEAELADFSDDP-DQLIEHLREQYVKLMQEEANL 395

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                 L  +     LK  + +  D     A  EA+    + G ++     +  + L   
Sbjct: 396 SNDLTSLESQ-LASELKLAESKKADYAKLQADLEASQTQEQAGLEELEIARQALKNLLND 454

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +   + + ++ A  + ++T  +  +L ++  +  +  S EA+++
Sbjct: 455 YQSQIQLVEKLEADYKHQQT-KMFELLDDLKNKQARSNSLEAILK 498


>gi|326934513|ref|XP_003213333.1| PREDICTED: homer protein homolog 3-like isoform 2 [Meleagris
           gallopavo]
          Length = 356

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 75/214 (35%), Gaps = 16/214 (7%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             RL +   +  TE +        +         S    +  L + + +      E   L
Sbjct: 112 AARLAREKSQDKTELTNPALSITSHQVLPSPIISSNGPGEDKLFRSQSADVEISTEKERL 171

Query: 489 LTLINHPAILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
             +++  ++ + Q++      + +  +   KL + L         +  +    +      
Sbjct: 172 KKMLSEGSVSEVQWEA----EFFSLQDNNSKLVAALHEANANVDQWKKQLAAYQEETETL 227

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            + + +L+ Q        +++E N  ++ Q  ++   L K      +  +   ++ ++  
Sbjct: 228 RQRVAELESQGAH----DSSSENNKEELSQTLEELELLIKAKDEEIQMLKS--QKCSRWE 281

Query: 607 AKGEAEKTAILISILH----EVHIQIHQIESQEA 636
           A+GE E+T   +  L     E+  ++H  E   A
Sbjct: 282 AEGEREETLQKLQELEARNAELERRLHLAEQTLA 315


>gi|326470375|gb|EGD94384.1| hypothetical protein TESG_01903 [Trichophyton tonsurans CBS 112818]
          Length = 1605

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 77/235 (32%), Gaps = 14/235 (5%)

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK-KNARHRDQKGPSQRL 466
            +   +  KD       ++   +   +  +  I +        + +  R+R       ++
Sbjct: 636 AREERDMWKDILEAETAAREQSEEENKRLRNQILQLENDISSHQCRETRYRKGHQSFSQV 695

Query: 467 MQSSLVKGKLSKKPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                     +     RE   LL     + A+ +E   + + +   N E +KL+  +   
Sbjct: 696 GSDYESSRSYATSNPTREDFELLRQ--ENNALRREVTAQTSMLTSRNREKEKLYQEIEDL 753

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            ++++          + +R       +   Q  D        +       +   Q  AL 
Sbjct: 754 KLDRRNEGRSIAGDSIFDRSASRAQSRAMSQASD-----NDRDTLENRNGELRDQVSALK 808

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ----IHQIESQEA 636
              + L  Q +E   +++ V    +AE    +   L ++  Q    +H IE +EA
Sbjct: 809 LDNQGLRSQLDEYANELSSVERDYQAE-LDRVSQELRDLQAQRDQALHAIEEREA 862


>gi|240277443|gb|EER40951.1| kinesin family protein [Ajellomyces capsulatus H143]
          Length = 1789

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 73/253 (28%), Gaps = 11/253 (4%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
                       +    I  K  I  I D+  +      ++  +  L Q+      G  R
Sbjct: 422 HLSETLNTVQYAQRARAIQSKPRIQQITDESDKQAVIDRLKAEVAFLRQQINNSEGGDRR 481

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
                 R   Q      L    L   +     S R A L+  L        +        
Sbjct: 482 SNAPQERAERQNEREIELQNHLLDVQESYTALSQRHAKLISELTKATDFTGDTDDL--QN 539

Query: 509 RYDNNELQKL-WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
              ++ +++L  S  F++ VEQ     E+  Q L           L      + L   T 
Sbjct: 540 LLGDSAMERLKRSHSFAESVEQVVLEYEKTIQSLESS-LSNTRSSLSNTES-SLLEKETK 597

Query: 568 EANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            A I  V    Q  +  +  R         E+E ++      G         +I+ E+  
Sbjct: 598 CAYIETVNAQLQARIQKMMDREANTEHYLHELESKL-----DGHTTGEEKNAAIIAELRK 652

Query: 627 QIHQIESQEAMIE 639
           +I +    EA  E
Sbjct: 653 EIARARENEASCE 665


>gi|195575533|ref|XP_002077632.1| GD22961 [Drosophila simulans]
 gi|194189641|gb|EDX03217.1| GD22961 [Drosophila simulans]
          Length = 1241

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 62/237 (26%), Gaps = 19/237 (8%)

Query: 391  ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
            E  +    +    LE   +  ++ I+    R +Y +   DR+++   +  +  S      
Sbjct: 875  EEYTRKRSERLGRLEEESRQLMSRIRRTADRGHYLKKSLDRIRRAPSREASFESNTEEEA 934

Query: 451  KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
               ++       S    +      + + +    E              ++   +L+    
Sbjct: 935  IPPSKSESCPATSPLTAEEEEYTSRRAARIQRMERE-----------SRQLIAQLSRNSE 983

Query: 511  DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
                       L   +              + +    + L+ ++R   +        E  
Sbjct: 984  RGENFATKLDTLHEQYGPNPQLDQARSSASVSQT-LEQRLEDIERVSANRAERLRILELQ 1042

Query: 571  IVDVRQGYQQA-------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
              ++              +          RQ+ E+ +Q         +E +  ++  
Sbjct: 1043 GNELIARLSSTSERGTAMINRIAEREATRRQEAELVEQTVPSEEATSSEASTRIVRH 1099


>gi|156379317|ref|XP_001631404.1| predicted protein [Nematostella vectensis]
 gi|156218444|gb|EDO39341.1| predicted protein [Nematostella vectensis]
          Length = 1026

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 86/264 (32%), Gaps = 15/264 (5%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
           D       + +  +   +  EL         +      +   +  +  R ++  +K   +
Sbjct: 8   DNNLDAVLQQQIMDQFRKDNELLQEQLEQRKNKSLMDTKAKLAARLARRQEEARRKTEED 67

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL----REAALLLTLINHPAIL 498
            +      +  A   ++   +  ++   ++  + + +       +E  +    + H    
Sbjct: 68  SAKRILEEQSLALAANKPKDADHVVVPEVIIPRETPEEQALKKEQERVIQEMKVRHAEEA 127

Query: 499 QEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           Q   ++L      + E               E K     E+  R       EL + L + 
Sbjct: 128 QRLKEKLERELKTDEEAAMQMKTADQERSLRELKDRHAAELSARGNNMSPEELQQLLAQH 187

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
            ++        +A+    +   QQ LA  +R + L  QK + E+++ +        +   
Sbjct: 188 QQEVDDAMEKLDADRSRQQSSLQQKLAEKRRKK-LEAQKRKQEREMTR--------EVME 238

Query: 617 LISILHEVHIQIHQIESQEAMIEG 640
               L ++  +  +   ++AMIEG
Sbjct: 239 QKKELQDIRTEHVKEAEKQAMIEG 262


>gi|47230009|emb|CAG10423.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 801

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 27/158 (17%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR---LCERGFGELLKQLD 554
           L E  +    ++   +EL  L   +          L E    R   L  +G  E +++ +
Sbjct: 23  LDELEEATVKLQKSEDELLDLQDKIIQAEGSNSSLLGEVEVLRKTLLKIQGKDEEVRKAE 82

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV--------- 605
              R         E+   ++R   ++          L R+  E+EK + +          
Sbjct: 83  DLCRTVREKLEREESVTKELRAEIER----------LQRRMAELEK-LEEAFGKSKSDCS 131

Query: 606 ----TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               +   E   T  L S L  +  ++ ++E  E  +E
Sbjct: 132 QLCLSLNEEKNLTKKLSSELDALKARLKEMEGSETKLE 169


>gi|27806123|ref|NP_776877.1| rho-associated protein kinase 2 [Bos taurus]
 gi|47606001|sp|Q28021|ROCK2_BOVIN RecName: Full=Rho-associated protein kinase 2; AltName:
            Full=Rho-associated, coiled-coil-containing protein
            kinase 2; AltName: Full=p164 ROCK-2
 gi|1326078|gb|AAC48567.1| Rho-associated kinase [Bos taurus]
          Length = 1388

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 100/288 (34%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 822  MSEKQLKQENNHLLEMKMSLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 881

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 882  ELKEECEEKTKLCKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 941

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 942  EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 993

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L E    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 994  NKLKEA--QEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1051

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1052 NDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1096


>gi|29421206|dbj|BAB21840.2| KIAA1749 protein [Homo sapiens]
          Length = 1047

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 95/290 (32%), Gaps = 10/290 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y +    +L      L +   + E    +     +   L           +D+ 
Sbjct: 717  QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEA 776

Query: 420  L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            L  R    Q ++D   +L  K   +        +   +    +   +    +S +  +  
Sbjct: 777  LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERI 836

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLP 534
             +   +   +   L+   A  Q+   +   +   N +L+     L   +    E      
Sbjct: 837  SRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQM 896

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLL 591
            E     L +R   E   + + Q+ +  L     E  +    +      Q   L  R + +
Sbjct: 897  EARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAM 956

Query: 592  SRQKEEIEKQIAQVTAKGEA-EKTAILISILHE-VHIQIHQIESQEAMIE 639
             RQ EE E++I ++ +  +  ++       ++E +  Q++ ++    + +
Sbjct: 957  KRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLRLKK 1006



 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 87/252 (34%), Gaps = 19/252 (7%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           +++++L I +      ++ +       +  R+R++   ++  ++H+          +  +
Sbjct: 359 EQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLE 418

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +     R     L + K+ ++    E   L        + +   +  +  R ++ E   L
Sbjct: 419 ESEGELRKNLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSAKRSEDREKGAL 473

Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLW----SATTEAN 570
              L     + +  L  +  Q    R  ER    L   L  +V              +A 
Sbjct: 474 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 533

Query: 571 IVDVRQGYQQA------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           +  +R+  ++A      LA         +   E+  ++ Q   +    ++  L   + ++
Sbjct: 534 LQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQL 593

Query: 625 HIQIHQIESQEA 636
             QI  ++  EA
Sbjct: 594 QRQIEDLKGDEA 605


>gi|325093527|gb|EGC46837.1| kinesin family protein [Ajellomyces capsulatus H88]
          Length = 1789

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 73/253 (28%), Gaps = 11/253 (4%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
                       +    I  K  I  I D+  +      ++  +  L Q+      G  R
Sbjct: 422 HLSETLNTVQYAQRARAIQSKPRIQQITDESDKQAVIDRLKAEVAFLRQQINNSEGGDRR 481

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
                 R   Q      L    L   +     S R A L+  L        +        
Sbjct: 482 SNAPQERAERQNEREIELQNHLLDVQESYTALSQRHAKLISELTKATDFTGDTDDL--QN 539

Query: 509 RYDNNELQKL-WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
              ++ +++L  S  F++ VEQ     E+  Q L           L      + L   T 
Sbjct: 540 LLGDSAMERLKRSHSFAESVEQVVLEYEKTIQSLESS-LSNTRSSLSNTES-SLLEKETK 597

Query: 568 EANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            A I  V    Q  +  +  R         E+E ++      G         +I+ E+  
Sbjct: 598 CAYIETVNAQLQARIQKMMDREANTEHYLHELESKL-----DGHTTGEEKNAAIIAELRK 652

Query: 627 QIHQIESQEAMIE 639
           +I +    EA  E
Sbjct: 653 EIARARENEASCE 665


>gi|307565511|ref|ZP_07627993.1| Toprim domain protein [Prevotella amnii CRIS 21A-A]
 gi|307345780|gb|EFN91135.1| Toprim domain protein [Prevotella amnii CRIS 21A-A]
          Length = 687

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 83/300 (27%), Gaps = 5/300 (1%)

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + D ++++E+        L    +++ H       +      + +           + + 
Sbjct: 82  RKDFVKVLEIINR--DLQLNICIERKEHSNPHTMMMKPCKPTLVQPPNQLKKMEGKKWYK 139

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             +     K ++       D         ++   +   S+ G+    G     +     Y
Sbjct: 140 LIEQSFNVKELDYWEQYGIDTKTLQRFHVKSLARYESVSNEGKPFTLGST--HEDPMFAY 197

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
                  ++     L   +G               +    + +  G  DVLSL   G   
Sbjct: 198 SMGKFVKVYRPKSKLRFLYGGEKVNDYVFGFQQLPSKGDVVFITGGEKDVLSLSAHGFNA 257

Query: 294 VVSSL-GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           +  +     + E  +  L      I++ +D D+ G+R A +  D +  + +    +    
Sbjct: 258 ICFNSETAQIPENIIEGLQLRFRHIIILYDSDETGIREAKRQTDALAQYKVLSLTLPLQG 317

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
               +D   F     +    K+++  +                   D   +    +    
Sbjct: 318 GKSEKDISDFFALGNEAKNLKVLLNDMFTNMYAQTMMILQSCEIDYDNPPDASKSVVAVN 377


>gi|251791834|ref|YP_003006554.1| ATP-dependent protease La [Aggregatibacter aphrophilus NJ8700]
 gi|247533221|gb|ACS96467.1| ATP-dependent protease La [Aggregatibacter aphrophilus NJ8700]
          Length = 805

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 60/173 (34%), Gaps = 5/173 (2%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            L  G +      ++ A +  + ++   L    + L     +  ELQ +   +  +F   
Sbjct: 83  KLPDGTVKVLVEGQQRAKIRKVEDNGEYLWAVAEPLLTTLGNEKELQVVHKAVLDEFQSY 142

Query: 530 KYFLPE---EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                +   +I   L +    E L           +        + +V + ++  L L +
Sbjct: 143 INLNKKVQPDILSALQQIDNLEQLSDTMASHLPVSVAQKQAVLEMTNVVERFEYLLGLMQ 202

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               L + ++ I  ++ +   K + +    L   +  +  ++ + E+  + IE
Sbjct: 203 SEADLLQVEKRIRGRVKKQMEKSQRDYY--LNEQIKAIQKELGETENTVSEIE 253


>gi|167630241|ref|YP_001680740.1| chromosome partition protein smc, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592981|gb|ABZ84729.1| chromosome partition protein smc, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 1190

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 79/233 (33%), Gaps = 27/233 (11%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           +Q+ +          R  +     + +    +  ++    + +L  K   +    L  L 
Sbjct: 277 RQVEEALTATRQEAHRRTEGVIALQGRLNVVRERIKGLAAQLQLLTKEQEQSRLALAELR 336

Query: 493 NHPAILQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           N     +E+ + +A+    +    + + L +    + V        ++ +RL +    + 
Sbjct: 337 NREGEQRERRRLVAEELMASQQAVDARLLRNAAAREAVTAVEKEIADLRRRLFDS--AQA 394

Query: 550 LKQLDRQVRDAGLWSATTEA-----------NIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           L +L  Q+ +A L  A  EA           +     +   +A  L +      RQ+ + 
Sbjct: 395 LARLRTQLHEADLRVARQEAQVRRLEGERERSRSRASELVGEADRLRREAAARERQRADK 454

Query: 599 EKQIAQVTAKGEAE----------KTAILISILHEVHIQIHQIESQEAMIEGF 641
           + +     A   A+          + +  +    EV  +   IE+ E   EGF
Sbjct: 455 QAE-RDADAAEMAQWRGQFNELEHRLSQTMRRWQEVSARRKAIEAMEKTYEGF 506


>gi|160887374|ref|ZP_02068377.1| hypothetical protein BACOVA_05393 [Bacteroides ovatus ATCC 8483]
 gi|237722645|ref|ZP_04553126.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. 2_2_4]
 gi|260171333|ref|ZP_05757745.1| endopeptidase Clp ATP-binding chain B [Bacteroides sp. D2]
 gi|299148949|ref|ZP_07042011.1| ATP-dependent chaperone protein ClpB [Bacteroides sp. 3_1_23]
 gi|315919644|ref|ZP_07915884.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156107785|gb|EDO09530.1| hypothetical protein BACOVA_05393 [Bacteroides ovatus ATCC 8483]
 gi|229448455|gb|EEO54246.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. 2_2_4]
 gi|298513710|gb|EFI37597.1| ATP-dependent chaperone protein ClpB [Bacteroides sp. 3_1_23]
 gi|313693519|gb|EFS30354.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 862

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/212 (9%), Positives = 67/212 (31%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++           +  +++    + +      +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVQVDEPDNLSTISILRGLKERYENHHHVRIKDDAIIAAVELSS 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      +     +          +   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDKPKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           ++    L     +      +  +Q    L  + +    + E ++ +  +   +G+  K  
Sbjct: 437 EIIGKELAELKEQEKSFKAK--WQSEKTLMDKIQQNKVEIENLKFEAEKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L   + +   Q+  ++  +AMI+
Sbjct: 495 EIRYGKLQALDKEIEDTQKQLRDMQGDKAMIK 526


>gi|18859423|ref|NP_571600.1| spectrin beta chain, erythrocyte [Danio rerio]
 gi|9944861|gb|AAG03012.1|AF262336_1 beta-spectrin [Danio rerio]
          Length = 2357

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 47/403 (11%), Positives = 111/403 (27%), Gaps = 40/403 (9%)

Query: 244  KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
            + + L N   AL +      +D  R   +   +++G  D         Q           
Sbjct: 1103 EAEQLLNLHDALRHDMDGHEEDYHRVKDTGAAVIQGQED-------DPQYQQLEQRLEGL 1155

Query: 304  EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
            +     L K+        D      +    A             +  V      D     
Sbjct: 1156 DKGWGELHKMWDSRKNFLDQGLGFQQFMRDAKQADAILNNQEYTLAHVDKPDTLDGAEKA 1215

Query: 364  RCYGKTAFEKLIVESLP------------LVDMLWKRETENRSFNTPDERAELEIHLKNC 411
                +     +                    + L+  + +++  +  +   + +   K  
Sbjct: 1216 LKKHEDFVTTMDANKEKILSTLETGQRLVDSENLYSGKVKDKMSSIEERNKKNQDKAKEV 1275

Query: 412  INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
               +KD +   ++ Q  +D    + +K +T         +       +       + S+ 
Sbjct: 1276 SGKLKDNRELQHFLQNTQDLTLWINEKMLTAQDTSYDEARNLHSKWQKHQAFMAELASNK 1335

Query: 472  VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                   K           + + P         LA +        +LW  L S   E+  
Sbjct: 1336 DWLHNIDKEGQ------ELMESKPEFEPIVKDRLAKLH-------ELWDKLESTTQEKAR 1382

Query: 532  FLPEEIHQRLCERGFGEL---LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             L +     L ++   +L   L +L +Q++   +     +    ++     Q      R 
Sbjct: 1383 LLFDANRSELFDQSLADLKKWLAELQQQLQ-GDVEEEVKDLTSANILLKKHQITENQVRD 1441

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            R   R+ EE+++ + Q  +  E +    +      +     ++
Sbjct: 1442 RA--RELEELQEAVQQHGSLREDQPELEI--EQQNLQRDFQKL 1480


>gi|15291317|gb|AAK92927.1| GH15471p [Drosophila melanogaster]
          Length = 2028

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 35/226 (15%)

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            L+ L ++    ++   +  +K          + R  + +  +    K     E   L   
Sbjct: 1457 LRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQT 1516

Query: 492  INHPAILQEQYQE--------LADIRY---DNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            +    +  E  +E        L ++ +      E  +L           +     E   +
Sbjct: 1517 LADTRLDLEFKEEKLASLQRELEEMTFGGGTEEEFAQLR----------RSKNETERRAK 1566

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LLSRQKEEIE 599
              E    E+  Q+    +       T E    + R+  QQ     +  R    ++ + +E
Sbjct: 1567 EQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALE 1626

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE--------SQEAM 637
             Q+     + E E+  +L+   HE+  ++  +E        ++EA+
Sbjct: 1627 CQL-----ETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEAL 1667



 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/284 (8%), Positives = 76/284 (26%), Gaps = 21/284 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE--IHLKNCINHIKDQ 418
              +R   +   ++   E   +    +K+          +                 +   
Sbjct: 1594 ETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSM 1653

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            + R    +   + L Q  ++ + ++    +  +          P + L++   ++ +L  
Sbjct: 1654 EDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIR--QLRNQLED 1711

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              S R        +      +   +        +   +        +     +    E+ 
Sbjct: 1712 AESAR-----SLAMKARQTAE--AELTEVQAMFDESHRARNDA--EERANAAHRDRAELQ 1762

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             ++ E             ++             ++V +   +   +      L  Q  E+
Sbjct: 1763 AQIEENEEEL-----GELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAEL 1817

Query: 599  EKQIAQVTAKGEAEKTA---ILISILHEVHIQIHQIESQEAMIE 639
            + ++  V   G+         L     E+  ++   ++  A +E
Sbjct: 1818 QHRLDNVENLGDPSMAMMSKRLELRTKELESRLELEQATRARLE 1861


>gi|32475233|ref|NP_868227.1| hypothetical protein RB8177 [Rhodopirellula baltica SH 1]
 gi|32445774|emb|CAD78505.1| hypothetical protein-putative transmembrane protein [Rhodopirellula
           baltica SH 1]
          Length = 1318

 Score = 41.8 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 76/231 (32%), Gaps = 20/231 (8%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
               +    +   + S      ++  +  D+    Q   +    +          +  + 
Sbjct: 671 ASEFEVTRSQQQQQPSQGSAGQQRKQQQLDELELDQEQDRYETQQQAQMTPEQQAQREIR 730

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG- 547
             L     + + Q          N EL +L S +     E++        +RL E+    
Sbjct: 731 QVLSRLSELARRQQDL-------NEELAQLQSAMQLADDEEEKEELRRQLERLREQQQDM 783

Query: 548 -----ELLKQLDRQVRDAGLWSATT--EANIVDVRQG-----YQQALALYKRFRLLSRQK 595
                EL+++++     + +  A+   E    ++R+       Q A       +   R+ 
Sbjct: 784 LRQTDELMERMNSPENASNMQEASEQLEQTRENIREAGEAMEQQDAETALSSGKRAEREL 843

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
           E + ++I +  A    E    +     E++ Q  ++E Q + ++   +  G
Sbjct: 844 ESVREEIREQAAGQFNEAMQSMRDRARELNTQQKELEEQLSEMDAPSESPG 894



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 78/275 (28%), Gaps = 9/275 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVD--MLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           P+   +   +    +L   +    D      +          +E  E        +   +
Sbjct: 721 PEQQAQREIRQVLSRLSELARRQQDLNEELAQLQSAMQLADDEEEKEELRRQLERLREQQ 780

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              LR      + +R+         + +       +       +   Q+  +++L  GK 
Sbjct: 781 QDMLRQT--DELMERMNSPENASNMQEASEQLEQTRENIREAGEAMEQQDAETALSSGKR 838

Query: 477 SKKP--SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +++   S+RE             +Q       ++     EL++  S +     E      
Sbjct: 839 AERELESVREEIREQAAGQFNEAMQSMRDRARELNTQQKELEEQLSEM-DAPSESPGLRS 897

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
               + L +    E  + L   + D        E +   + Q    A    ++ R    +
Sbjct: 898 SGNREELKDA-LTEQRESLGELMEDIEEVVQEAEESEPLLAQNLYDAFRETQQRRT-EER 955

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +   + + +   +   +        + E+  QI 
Sbjct: 956 LDAASQLLQRGFDEQSQQMAGQAGEAIQELSEQIE 990


>gi|332878495|ref|ZP_08446216.1| replicative DNA helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683590|gb|EGJ56466.1| replicative DNA helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 503

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 59/184 (32%), Gaps = 16/184 (8%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           G +  +    E A+L  L+       +  + L    + ++  Q ++  + +  ++QK   
Sbjct: 10  GHVQPQALEFEEAVLGALMIEQDAYSQVSEILRPESFYDHRHQLIYEAIRTLNLQQKPVD 69

Query: 534 PEEIHQRLCERG-FGEL-----LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
              + + L   G   E+     + QL  +V  +                          +
Sbjct: 70  ILTVTEHLNTMGKLEEVGGPFYITQLSGKVASSAHIEYHARIIAQKFLARELITFTSLVQ 129

Query: 588 FRL------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHE----VHIQIHQIESQEAM 637
            +       +    +E E ++ +++ +   +    +  ++ E    +     + +    +
Sbjct: 130 TKAFDTTVDVDDLMQEAEGKLFEISQQNMKKDYTQINPVIREAYDMLQKAAARSDGLSGL 189

Query: 638 IEGF 641
             GF
Sbjct: 190 SSGF 193


>gi|327267570|ref|XP_003218572.1| PREDICTED: LOW QUALITY PROTEIN: structural maintenance of
           chromosomes protein 3-like [Anolis carolinensis]
          Length = 1217

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 112/333 (33%), Gaps = 17/333 (5%)

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
           +     +++  +G             L              LL  G  P           
Sbjct: 23  FSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQRLALLHEGTGPRVISAFVEIIF 82

Query: 371 FEKLIVESLPLVDMLWKRET-ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
                   +   ++  +R     +     D++   +  + N +      +   YY    +
Sbjct: 83  DNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKNDVMNLLESAGFSRSNPYYIVK-Q 141

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            ++ Q+     ++     R       + ++K  S  LM+ +  K +           LL 
Sbjct: 142 GKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMKETEGKREKIN-------ELLK 194

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +      L+E+ +ELA  +  +   + L   +++  + +     +E+  +    G    
Sbjct: 195 YIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDELSAKRETSGEKS- 253

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVR------QGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +QL    +DA       E  + +++      +  ++ L+  ++ ++  R K E++ +  
Sbjct: 254 -RQLRDAQQDARDKMEEIERQVRELKAKISAMKEEKEQLSAERQEQIKQRTKLELKAKDL 312

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           Q    G +E+   L+    ++  +I + + + A
Sbjct: 313 QDELAGNSEQRKRLLKERQKLLEKIEEKQKELA 345



 Score = 37.2 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 35/346 (10%), Positives = 93/346 (26%), Gaps = 24/346 (6%)

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T     ++  L K     +   + +   L    K   +                    D 
Sbjct: 182 TEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDE 241

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            S  R        +L        D + + E + R         + E             +
Sbjct: 242 LSAKRETSGEKSRQLRDAQQDARDKMEEIERQVRELKAKISAMKEEKEQL-------SAE 294

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    Q  +  L+    +     +   R      R +  +   ++  + +  + K +  
Sbjct: 295 RQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSV 354

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK--LWSFL--FSDFVEQKYFLPE 535
               E  +               ++    ++ + E +   +   L      +  K     
Sbjct: 355 KEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIA 414

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            IH+ L +               +             D+ +   +   L +++  +  +K
Sbjct: 415 AIHKDLEDTE------------ANKEKNLEQYSKLDQDLSEVKARVEELDRKYYEVKNKK 462

Query: 596 EEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMIEG 640
           +E++ +   +  +  AE +         E   Q+ +  + +A++ G
Sbjct: 463 DELQSERNYLWREENAEQQALAAKREDLEKKQQLLRAATGKAILNG 508


>gi|327252201|gb|EGE63873.1| hypothetical protein ECSTEC7V_3049 [Escherichia coli STEC_7v]
          Length = 344

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 71/210 (33%), Gaps = 12/210 (5%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +   +++++   +     +  GR    +   +  +  +           +L ++P + E
Sbjct: 23  LEKFLEQIREGVNEVPDISTDKGRKRIASLAAKVSRSKTAVEKPGRDYLKRLKEQPKVVE 82

Query: 485 AALLLTLINHPAILQEQYQELAD----IRYDNNELQK----LWSFLFSDFVEQKYFLPEE 536
           A L   +     +  E  + L +     +     LQ+    L +      +   Y    +
Sbjct: 83  AELRRFVTECDRLRDEVRRPLTEWENAEKLRTEALQQRLTNLRALADVIDLSGNYLPSSD 142

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +R+ E     L +       +AG+     ++ I  + +    A         L R ++
Sbjct: 143 IQERIQEAKSVALDESWQEYAAEAGV---AKDSTIQKLEESLAVAQKREHEAAELERLRK 199

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           E E++ A++  +    + A   + L     
Sbjct: 200 EAEEK-ARIEREENIRREAAEQARLEAEQK 228


>gi|317013709|gb|ADU81145.1| heat shock protein [Helicobacter pylori Gambia94/24]
          Length = 856

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 92/280 (32%), Gaps = 26/280 (9%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R   K   + L+ + +  +D+              +   ++   +K   N I        
Sbjct: 220 RIVNKEVPKTLLNKRVVALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVI-------L 272

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +              + +  +    K          
Sbjct: 273 FIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYFEKD------MAL 326

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLW---SFLFSDFVEQKYFLPEEIHQR 540
           +      L+N P+ + E  Q L  ++        +    S L +       ++ +     
Sbjct: 327 QRRFQPILLNEPS-INEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPD 385

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL------YKRFRLLSRQ 594
                  E   QL  Q+       ++ + +I  + +  +QAL +      +KR + + ++
Sbjct: 386 KAIDLIDEGAAQLKMQMESEPAKLSSVKRSIQRL-EMEKQALEMENKESNHKRMQEILKE 444

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             +++++  Q+ A+ E EK   +   +  + +++  ++ +
Sbjct: 445 LSDLKEKKIQLEAQFENEK--EVFKEISRLKMEMESLKKE 482


>gi|238855517|ref|ZP_04645822.1| replicative DNA helicase [Lactobacillus jensenii 269-3]
 gi|260665221|ref|ZP_05866070.1| replicative DNA helicase [Lactobacillus jensenii SJ-7A-US]
 gi|282931543|ref|ZP_06337042.1| replicative DNA helicase [Lactobacillus jensenii 208-1]
 gi|313472772|ref|ZP_07813260.1| replicative DNA helicase [Lactobacillus jensenii 1153]
 gi|238831883|gb|EEQ24215.1| replicative DNA helicase [Lactobacillus jensenii 269-3]
 gi|239529055|gb|EEQ68056.1| replicative DNA helicase [Lactobacillus jensenii 1153]
 gi|260560958|gb|EEX26933.1| replicative DNA helicase [Lactobacillus jensenii SJ-7A-US]
 gi|281304350|gb|EFA96453.1| replicative DNA helicase [Lactobacillus jensenii 208-1]
          Length = 455

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 9/138 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                  S  E A+L  +   P  + +    +    +     + L++ +       +   
Sbjct: 6   SPQIPHDSEAEKAVLGAIFIDPEAIADAEAIVTVDDFYERANRILFAAMKDLADRDEAID 65

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  I   L +    + L+ +      + +  AT  +        Y Q +    R   L R
Sbjct: 66  PLTIRDELAK---RKQLEDIGGIAYISDVAVATPTSA---HVTYYAQIV---HRKSQLRR 116

Query: 594 QKEEIEKQIAQVTAKGEA 611
                +K I       + 
Sbjct: 117 LIAASQKIIQNAMEGSDD 134


>gi|256383844|gb|ACU78414.1| viral A-type inclusion protein repeat protein [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|256384675|gb|ACU79244.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455374|gb|ADH21609.1| conserved hypothetical protein [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 753

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 81/247 (32%), Gaps = 3/247 (1%)

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLRY-YYSQAIRDRLQQLFQKYITEHSGYGRY 449
           E+      ++   L+  + N    IKD   +     +   ++++ L Q      S   + 
Sbjct: 37  EHEFKQLEEKLRTLQNEILNSEAKIKDLDTKDAEIIKNSNEKIKILKQLESDITSKLTQE 96

Query: 450 WKKNARHRDQKGPSQRLMQ-SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
             K          S    +     K KL ++ +  +   L    NH     E  +    +
Sbjct: 97  NNKINELIKNLNISISESKIKKEQKIKLEQELAKLKREKLKNDANHTFFNGEIRKLQDKL 156

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
              N +L +L   + S   E      ++ +++         L +    +    L     +
Sbjct: 157 VLSNTKLDELKERIKSYESELIKLETDKNNKQKNIDKVKNELAKKQHLILVLKLKIQEYD 216

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             + D     +Q  +L K      ++ +E  + + +   +   + +    +   E+  +I
Sbjct: 217 QLLKDYSNLEEQFNSLKKSVNEKQKEIQEKTEILQRTHEQL-QQLSNSNDNDKKELKNKI 275

Query: 629 HQIESQE 635
            ++E  E
Sbjct: 276 SKLEQTE 282


>gi|218295874|ref|ZP_03496654.1| excinuclease ABC, B subunit [Thermus aquaticus Y51MC23]
 gi|218243612|gb|EED10140.1| excinuclease ABC, B subunit [Thermus aquaticus Y51MC23]
          Length = 665

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 1/104 (0%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSR 593
           E + + + E      +++           +       V   +GY +A   L      L  
Sbjct: 553 EAMEKAIRETNRRRAIQEAYNLEHGIVPKTVEKGVRAVIRPEGYGEAPFELPSEEEDLKA 612

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           +  E+E  + Q     + E+ A L   +  +  ++  +++ EA+
Sbjct: 613 RLAELELLMWQAAEALDFERAAALRDEIRALEARLQGVKAPEAL 656


>gi|149054969|gb|EDM06786.1| rCG34191 [Rattus norvegicus]
          Length = 931

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 61/172 (35%), Gaps = 26/172 (15%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQK-----LWSFLFSDFVEQKYFLPEEIH 538
           E   L   +   + L+ + +EL  ++ +N +L+      +   +    +++     +E+ 
Sbjct: 243 ERESLERSLKMASDLEPEGEELNRLKEENEKLRSMTFSLVEKDILEQSLDEARESKQELV 302

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R+       L ++     R    +    E  ++  R+         ++  +L  Q  E+
Sbjct: 303 DRIHS-----LRERAVAAERQQKQYWEEKEQTLLQFRKTQVDCELYKEKMTMLQGQVAEL 357

Query: 599 EKQIAQVTAKGEAEKTA----------------ILISILHEVHIQIHQIESQ 634
           +K+  Q     +  +                   L   + E+  Q+ +++++
Sbjct: 358 QKERDQAYTARDRAQMEISQRLVEKDALRRRVFELTEQVCELRTQLRRLQAE 409


>gi|148989269|ref|ZP_01820649.1| hypothetical protein CGSSp6BS73_03122 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147925247|gb|EDK76326.1| hypothetical protein CGSSp6BS73_03122 [Streptococcus pneumoniae
           SP6-BS73]
          Length = 1080

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E  +E A +  +   L+ L   +       +    +    R+ E+G     +Q  +
Sbjct: 580 QLQKEIAEEEASLGSEEVALKTLQDQMARLTESLEAIKSQGEQARIQEQGLSLAYQQTSQ 639

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  I  +  G  QA      +R   ++  K+ +E +I ++ +      
Sbjct: 640 QVEELETLWKLQEEEIDRLSDGDWQADKENCQERLAAIASDKQNLEAEIEEIKSNKNAIQ 699

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 700 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 734


>gi|120601927|ref|YP_966327.1| hypothetical protein Dvul_0879 [Desulfovibrio vulgaris DP4]
 gi|120562156|gb|ABM27900.1| plasmid/phage primase, P4 family [Desulfovibrio vulgaris DP4]
          Length = 738

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 28 DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV-KGDHLSFLSALLGCSFI 86
           R+    + GD     P H     SF  N   G +  F+     GD ++ ++A    +  
Sbjct: 33 KRQGRELIAGDIHG-NPGH-----SFSLNTESGVWSDFATGETGGDVIALVAAQEDIAQS 86

Query: 87 ESVQRLAAIAGV 98
          ++   +A + G+
Sbjct: 87 KAALMIAELLGL 98


>gi|326669216|ref|XP_003198956.1| PREDICTED: zinc-binding protein A33 [Danio rerio]
          Length = 440

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 39/103 (37%), Gaps = 4/103 (3%)

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-SRQK 595
             +RL +    ++++   ++++D    +   + +    +       +   R   +   + 
Sbjct: 101 FKERLSKSEVQQMIQDRIKKIQDIKHSAELRKKSTEREKASTVGLFSDLLRSIEICQAEL 160

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVH---IQIHQIESQE 635
            E+ K+  +   K + E    L   ++E+     ++  + S E
Sbjct: 161 LEMIKEKQKAAEKQDEELIQELQQEINELKMSNSELDHLSSTE 203


>gi|311250207|ref|XP_003124000.1| PREDICTED: kinesin-like protein KIF20A-like [Sus scrofa]
          Length = 890

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 60/162 (37%), Gaps = 22/162 (13%)

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            P++  +   E+    Y   EL ++   + +  ++++     ++   L +    E+++Q+
Sbjct: 542 DPSLDDDIENEVDISTYGKEELLQVVEAMKALLLKERQ-EKLQLEMHLRDEICNEMVEQM 600

Query: 554 DRQV----RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR--QKEEIEKQIAQVT- 606
            ++               E    +     +++L  + +  L  R  + EE+E  + +   
Sbjct: 601 QQREQWCSEHLDTQKELLEEMYEEKLTILKESLTSFYQEELQERDEKIEELEALLQEARE 660

Query: 607 ---------AKGEAEKTAIL-----ISILHEVHIQIHQIESQ 634
                    ++    ++  L        L E+  ++ Q +++
Sbjct: 661 QSVAHQQPGSELSLRRSQRLAASASTQQLQEIKAKLEQCKAE 702


>gi|302414646|ref|XP_003005155.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261356224|gb|EEY18652.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 781

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 76/227 (33%), Gaps = 17/227 (7%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            D +        + +R +QL ++     +       +     +     +    S   K  
Sbjct: 361 NDDQEAERLRHQLEERDRQL-REQAATLADMESSLTELQTLMENPDALRPRRNSLDDKDS 419

Query: 476 LSKKPSLREA--ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
              +  LRE    + +      A   +    +  +   + E ++++              
Sbjct: 420 TQLRAILREKNEKIAMLTAEFDAHRADFRSTIDTLEMASTETERVYEKRI---------- 469

Query: 534 PEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LL 591
            EE+ Q + +     + +  + +Q++         E  + D R+G  +A    +  R  +
Sbjct: 470 -EELMQEIRDHESRTDDVDSVAQQLKQLEELVQELEEGLEDARRGEAEARGEVEFLRGEV 528

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            R + E+ ++  +  + G +       +   E+  +  +I   +A+I
Sbjct: 529 ERTRSELRRE-REKPSTGHSAPAQDATASSKELEQKEDEIRGLKAII 574


>gi|256045480|ref|ZP_05448364.1| ATP-dependent chaperone ClpB [Brucella melitensis bv. 1 str. Rev.1]
          Length = 637

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 80/211 (37%), Gaps = 32/211 (15%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++KY+ + +   R ++           +  +++    K +   K  + ++AL+   + 
Sbjct: 318 EEYRKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAAML 377

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +    +L   + S                       E+ +++
Sbjct: 378 SNRYITDRFLPDKAIDLVDEAASRLRMQVDS-----------------KPEELDEIDRRI 420

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            +   +       T+A   D             R + + ++  ++E++ A++TAK +AEK
Sbjct: 421 MQLKIEREALKVETDAASKD-------------RLQRIEKELSDLEEESAELTAKWQAEK 467

Query: 614 TAILISILHEVHIQIHQIESQEAMIEGFGKM 644
             + ++   ++  Q+ +  +  A+ +  G+ 
Sbjct: 468 QKLGLAA--DLKRQLEEARNALAIAQRNGEF 496


>gi|195396180|ref|XP_002056710.1| GJ10064 [Drosophila virilis]
 gi|194143419|gb|EDW59822.1| GJ10064 [Drosophila virilis]
          Length = 896

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 76/227 (33%), Gaps = 12/227 (5%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
              S A+R  + Q+ +    +              +D K  +      S  +  L ++  
Sbjct: 329 QQLSDALRQWMSQIDRLAAKQLQQIFALVGNMQTIQDIKLAAGATASRSYAE--LEQQLK 386

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           L +A L    I +  ++  + +E+    +    LQ+ +  +           P +I +  
Sbjct: 387 LPQAQLDFYRIKYMPLINARVREIIRSSWS-AALQQTYEQVVKLVENSTPPAPLQIWREQ 445

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF--RLLSRQ--KEE 597
            +     L   L  Q +     +   E   + +   +   LA   +    LL  Q  + E
Sbjct: 446 SDDLPLSLAAALSDQPKRLANRTKGYETATIALCGHFDAQLAAIVQELNVLLQEQTTRAE 505

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ-----IHQIESQEAMIE 639
            +  + +   +   ++    +  L  + +Q     +  + +  A+IE
Sbjct: 506 DKLALIKFLRETAQQQMTEYLRQLKALRLQERHALLQALRNTLALIE 552


>gi|119591887|gb|EAW71481.1| glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein,
           isoform CRA_a [Homo sapiens]
          Length = 925

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 35/132 (26%), Gaps = 5/132 (3%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
               + +         L   ++      P        +  +   L  L   +      + 
Sbjct: 153 DPADFSDESNTASREKLIDHYLGHNSEDPALEGTYARKSDYISPLDDLAFDMYQDPEVAQ 212

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILISILH 622
                    R+  Q+    Y +   L +   +++K   ++ +   +           +  
Sbjct: 213 IIRKLDERKREAVQKERYDYAKK--LKQAIADLQKVGERLGRYEVEKRCAVEKEDYDLAK 270

Query: 623 EVHIQIHQIESQ 634
           E   Q+ Q  ++
Sbjct: 271 EKKQQMEQYRAE 282


>gi|40788288|dbj|BAA25488.2| KIAA0562 protein [Homo sapiens]
          Length = 931

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 35/132 (26%), Gaps = 5/132 (3%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
               + +         L   ++      P        +  +   L  L   +      + 
Sbjct: 159 DPADFSDESNTASREKLIDHYLGHNSEDPALEGTYARKSDYISPLDDLAFDMYQDPEVAQ 218

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILISILH 622
                    R+  Q+    Y +   L +   +++K   ++ +   +           +  
Sbjct: 219 IIRKLDERKREAVQKERYDYAKK--LKQAIADLQKVGERLGRYEVEKRCAVEKEDYDLAK 276

Query: 623 EVHIQIHQIESQ 634
           E   Q+ Q  ++
Sbjct: 277 EKKQQMEQYRAE 288


>gi|268558478|ref|XP_002637229.1| C. briggsae CBR-TAG-59 protein [Caenorhabditis briggsae]
 gi|187024193|emb|CAP36237.1| CBR-MRCK-1 protein [Caenorhabditis briggsae AF16]
          Length = 1586

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 92/291 (31%), Gaps = 18/291 (6%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                   K   + L            +++ ++      +++ +        +   K + 
Sbjct: 489 YEATIAQLKDEIQILNKRLEDEAVAQQQQKPKDEIVVESEKKLKELKERNKQLVMEKGEI 548

Query: 420 LR------YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            R       +  Q + ++   + Q+   +           +     K   +   ++    
Sbjct: 549 QRELDNINDHLDQVLVEKATVVQQRDDMQAELTDIGDALLSEKDAVKRLQEESEKAKKQT 608

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKY 531
            +L +K    EA  ++ +     +  E  + +    + + E+      +       E+K 
Sbjct: 609 TELEEKLKDVEAEKVILIKKQEEVTLEARKSVETDDHLSEEVVAAKKNIATLQTANEEKE 668

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRL 590
              +++ QR+ E        +       +       EA+    ++  Q  +  +    R 
Sbjct: 669 AEIKKLKQRMEE--------ERANHTAQSEQEMKQLEAHYERAQKMLQDNVEQMNVENRG 720

Query: 591 LSRQKEEIEKQIAQVTAKGEAEK-TAILISILHEVHIQIHQIESQEAMIEG 640
           L  + E++ +Q+A +      E+    L + ++E      ++E+    I G
Sbjct: 721 LRDEIEKLSQQMAALPRGALTEQQLLELFNWVNEEKATREEMENLTRKITG 771


>gi|332978072|gb|EGK14810.1| glutamyl-tRNA reductase [Desmospora sp. 8437]
          Length = 447

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 75/231 (32%), Gaps = 19/231 (8%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP---------SQRLMQ 468
           +    +  ++  DR+  L + +        R+  +                   S    +
Sbjct: 195 ELTAKHLVESGADRVIVLNRTFAKAKEMADRFHGEARPFHQLVASIREADIVVSSTGAPE 254

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN-NELQKLWSFLFSDFV 527
           + + K  + K    R + L L  I  P  +      L ++   + ++L+ +         
Sbjct: 255 AVIAKNAVEKAVDKRLSPLFLIDIAVPRDIDPAIHGLDNVFLYDIDDLKDIVETNLGLRQ 314

Query: 528 EQKY-------FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQ 579
            +            E   + +   G   L+  L  +  +    +  + E  + D+ +  +
Sbjct: 315 REAEKAEGMIREEVEHFREWVHTLGVVPLITALREKAMEIQAETMDSIERKLPDLTEREK 374

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           + L  + +  ++++   +   +I ++      ++   L + +  +  Q+  
Sbjct: 375 RVLRKHTKS-IVNQMLRDPLARIKELAVTKNRDEAFELFAHIFALEEQLEA 424


>gi|329929594|ref|ZP_08283301.1| chromosome segregation protein SMC [Paenibacillus sp. HGF5]
 gi|328936239|gb|EGG32691.1| chromosome segregation protein SMC [Paenibacillus sp. HGF5]
          Length = 1189

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 68/208 (32%), Gaps = 21/208 (10%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           + +     I +         ++   R     +  +++    K +  +K    E  LL   
Sbjct: 133 IGKEAYSIIGQGRIEEILSTRSEDRRGIFEEASGIVKYKSRKKESVRKLDETEQNLLRI- 191

Query: 492 INHPAILQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                ++ E   ++  ++  +      ++L   L    +    +  E+IH    E     
Sbjct: 192 ---HDLVTELEDQIGPLKEQSEKAIRYKELREELKHKEISLYVYQIEQIHTSWSEANAK- 247

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L+QL  +        +  +A +   R   +Q          L ++ E+++ Q+ Q +  
Sbjct: 248 -LEQLKEEQLALSTVVSAHDAKLESDRSALRQ----------LEQEVEDLQSQLLQFSEL 296

Query: 609 GEAEK--TAILISILHEVHIQIHQIESQ 634
            E  +    +L      +     Q+E  
Sbjct: 297 FEKSEGYGEVLKERRRNLERTREQLEES 324


>gi|313232125|emb|CBY09236.1| unnamed protein product [Oikopleura dioica]
          Length = 810

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 32/341 (9%), Positives = 92/341 (26%), Gaps = 21/341 (6%)

Query: 315 PRIVLCFDGDDPGLRA-AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT--AF 371
             +    D  +  +         +   ++               D   + R   +   A 
Sbjct: 358 MNMSTIHDMTNASVMFKTMSGTMIDNYNVTFDEDYRKWKKIDLIDDLIYYRDRDRELSAS 417

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
              +  +    + L   E  +      + + ++        N    +  + +    +  +
Sbjct: 418 IFAMKNAWKDDEKLMNEERMDFDIQKRNWKVDMHNQKARLQNEYTSETEKLFEKMKLLKQ 477

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS--SLVKGKLSKKPSLREAALLL 489
             +  +K + E           A     +  S    +      +        L E  +L 
Sbjct: 478 AVKEAEKQVVELRAEQASLISTAIEEALETKSADFERKLADAEERATQNDELLSEVQVLK 537

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFS-----DFVEQKYFLPEEIHQRLCER 544
               +  +     +  + +   + +L+   S +          E +  L +     +   
Sbjct: 538 MKNQNLEVAAR--EHKSKMEIKSADLRNARSAIAQLELKLASKEDELLLVKTDRMSIDPL 595

Query: 545 GFGELLK---------QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
              E +          +         + ++T E  +  V     Q+++       L RQ 
Sbjct: 596 DSNETIDFDKISPPTCRSSILPSRRAILNSTQELMLNIVDDKSSQSVSEENDKVDLYRQI 655

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           +++ +Q+ +     +        +    +  QI +  S+EA
Sbjct: 656 QDLNRQLREAKKDAKDSSEKKENNHHEALLHQIKEAASREA 696


>gi|302822418|ref|XP_002992867.1| hypothetical protein SELMODRAFT_187058 [Selaginella moellendorffii]
 gi|300139315|gb|EFJ06058.1| hypothetical protein SELMODRAFT_187058 [Selaginella moellendorffii]
          Length = 1264

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 89/315 (28%), Gaps = 32/315 (10%)

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             +      +GE+    ++ +      +    +  + +   +   E+   N      E+ 
Sbjct: 548 LHIFQFETKQGEEICVALQTHINDVMLRRYSRTRSVANGAIQSNGESAVPNFKPPGIEVY 607

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
                 ++ + D+  +        D+  + F+    +        +        +   Q 
Sbjct: 608 EKHVQDMSRLLDESQKK------ADQASRFFELREKDKRQTSLLEELEGFKDRLRAEQQT 661

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPA----------------ILQEQYQELADIR 509
           +   +  + KL K    +E AL   L    A                +     +   D+ 
Sbjct: 662 VTDITQEREKLRKAVEEKETALQAALAEKSADDEHGREEAAPTKKGILRGSIGRRDRDLP 721

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
           +       L + +     E K+   E        +      + L+++V            
Sbjct: 722 FAEKASSALEAQVKDLRNELKWKSEEARLAEERNKKLMNEKQLLEQKVSRVEKLKGEETK 781

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--------EKTAILISIL 621
            +    +  +    L  R   L ++  E  ++I+   A            + +   +  L
Sbjct: 782 VLEKKFEEERS--MLRVRISELEKKLNERTQEISVAEAALSLRTSELEAMQCSMKELEEL 839

Query: 622 HEVHIQIHQIESQEA 636
            E+   I +  +Q A
Sbjct: 840 REIKEDIDRKNAQTA 854


>gi|256084192|ref|XP_002578315.1| Tpr [Schistosoma mansoni]
 gi|238663684|emb|CAZ34553.1| Tpr , putative [Schistosoma mansoni]
          Length = 2458

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/289 (9%), Positives = 87/289 (30%), Gaps = 41/289 (14%)

Query: 387  KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
            ++  ++    + +        ++     I+D + R    +     ++    +   E S  
Sbjct: 884  QQTLQHELTLSRESLESSGREIQQLNTRIRDLEERLAAVKPHDGNMEPNLSESSPECSKK 943

Query: 447  GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
             +   +   H  +   S             +      E   L  ++     L+E +   +
Sbjct: 944  AQIRVREMEHEIESLKSSLESSRQQSDRMKTLAEQAEER--LKEIVEENKRLEEHF---S 998

Query: 507  DIRYDNNELQ--KLWSFLFSDFVEQKYFLPEEIHQRLCE---RGFGELLKQLDRQVRDAG 561
                +  + +  +L  +++    + +      ++  L           L  L  ++  + 
Sbjct: 999  RDMCETKQHKTKQLLYYIYRLMHQTERPNHNRVNFHLFNYQIEYLRRELASLQNELESSR 1058

Query: 562  --------------LWSATTEANIVDVRQGYQQALALY-----------KRFRLLSRQKE 596
                              + +    + R  Y++ L L+            +   +     
Sbjct: 1059 TRYESALQVEAGAKAEIESHQQAAQEARDKYERELTLHAHDVELLTAVRSQLDSIKMHSS 1118

Query: 597  EIEKQIAQVTAKGEAEKTA-----ILIS-ILHEVHIQIHQIESQEAMIE 639
            E+E+++ +  +K E           L      E++ Q+ Q + ++ +++
Sbjct: 1119 ELEQELNESRSKAETAMADLKIQSELWESEKQELNRQLKQGQEEQNLLQ 1167



 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 29/285 (10%), Positives = 78/285 (27%), Gaps = 32/285 (11%)

Query: 361  SFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              I+ +     ++L    S     M   +       +   E        +   N ++DQ 
Sbjct: 1111 DSIKMHSSELEQELNESRSKAETAMADLKIQSELWESEKQELNRQLKQGQEEQNLLQDQI 1170

Query: 420  L----RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +    R   +Q I      +               +KN      +  S  + +  L    
Sbjct: 1171 IQVKDRMSSTQDIESINSDIKTSEELLQVIGYLRRQKNMADVAHEAASAEVSRLLLRVSS 1230

Query: 476  LSKKPSLR------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            L  +          E       +       E  + +  +       + L           
Sbjct: 1231 LESQKENLQSQIDNERKAAELAMETARKHSEVMERVEQLNLVTESNRLLR---------- 1280

Query: 530  KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 E +  +L +      L +L+ +V          + +  D+       +   +   
Sbjct: 1281 --HEREVLRSKLSDA--ENQLAKLNDEVGPL-------KQSNSDLIAQKDILIYDKRSLE 1329

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                + +E   ++ +   + + E+  +  +   E+  ++++ E +
Sbjct: 1330 EERDRWKERCSRLVETAQRMDPEQYRLACNERDELQRRLNRAEEE 1374


>gi|148669444|gb|EDL01391.1| dystrobrevin, beta, isoform CRA_a [Mus musculus]
          Length = 657

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 54/180 (30%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +        E AL+ + +             + +   + E + +  +   
Sbjct: 397 PTPTKRLQYSQDMPNLLADEHALIASYVARLQHCTRVLDSPSRL---DEEHRLIARYAAR 453

Query: 525 DFVEQKYFLP---EEIHQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E         +        +   +L+ +L+ + R+            E       + 
Sbjct: 454 LAAEAGNMTRPPTDASFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEK 513

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 514 AQQNPMLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEGLMKLLKE-EEQKQAAQAT 571


>gi|145480597|ref|XP_001426321.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393395|emb|CAK58923.1| unnamed protein product [Paramecium tetraurelia]
          Length = 787

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/185 (9%), Positives = 62/185 (33%), Gaps = 8/185 (4%)

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
           N           +  ++   +   S+  + +E   L  +  +   +++  + +   +   
Sbjct: 228 NESEVSINEEQPKKQKTEEKQMASSQIDAKKEQEYLKIIKQYQQKIKQLNEAIDQQK--- 284

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
              Q + S +  D +E+     ++  + +  +    L   +              +    
Sbjct: 285 ---QPVLSEIIEDQIEEFQEQLDKTEESISNK--KHLYPGIAGIGISLYDEFRLPQIVEE 339

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            V+   ++     ++     ++ +++E+Q      + +      L  +  E+ +Q  +I+
Sbjct: 340 QVQHRLKELGVQERQTEEAEQKIKDLEEQHQAELDRIKQNYEEQLQQMRLEIELQQERIK 399

Query: 633 SQEAM 637
             E +
Sbjct: 400 DAERL 404


>gi|50761104|ref|XP_418233.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 353

 Score = 41.8 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 74/214 (34%), Gaps = 16/214 (7%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             RL +   +  TE +        +         S    +  L + + +      E   L
Sbjct: 109 AARLAREKSQDKTELTNPALSITSHQVLPSPIISSNGPGEDKLFRSQSADVEISTEKERL 168

Query: 489 LTLINHPAILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
             +++  ++ + Q++      + +  +   KL + L         +  +    +      
Sbjct: 169 KKMLSEGSVSEVQWEA----EFFSLQDNNSKLVAALHEANANVDQWKKQLAAYQEETETL 224

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            + + +L+ Q        +++E N  ++ Q  ++   L K      +  +   ++  +  
Sbjct: 225 RQRVAELESQGAH----DSSSENNKEELSQTLEELELLIKAKDEEIQMLKS--QKCGRWE 278

Query: 607 AKGEAEKTAILISILH----EVHIQIHQIESQEA 636
           A+GE E+T   +  L     E+  ++H  E   A
Sbjct: 279 AEGEREETLQKLQELEARNAELERRLHLAEQTLA 312


>gi|295100020|emb|CBK89109.1| Membrane-bound metallopeptidase [Eubacterium cylindroides T2-87]
          Length = 454

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 69/246 (28%), Gaps = 25/246 (10%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y++   D      +    +    G    +  +   ++   Q+L ++              
Sbjct: 24  YAEDYSDEDAWYARCSQPQTDQAGVSACQGFQDYQEQ-KRQQLQENINSFNNDIASLKSD 82

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            A +         +      ++         ++K    L +   E K    +E   ++  
Sbjct: 83  SAEIEALAKQQKELADSLTSQIQAKEESIQTIEKSIQDLVAQI-EAKQAEIDEWDAQIKS 141

Query: 544 RGFGEL-----------------LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           R   E                  L  + R++      +   +  I  + +   +      
Sbjct: 142 RMQSEQTTIGTNIVIDLIMGSDNLNDMLRRISGVERITEDDQDQIEKLNELKAELELQKS 201

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILH----EVHIQIHQIESQEAMIEG 640
               L  + +E + Q+ +   + +   E    L+        ++  ++   ++  A I  
Sbjct: 202 EQERLENETKEQKAQLEEEREQVKQLEESYNKLVEEYQKQIADLQAKMRSAQADIASIRS 261

Query: 641 FGKMSG 646
           F   SG
Sbjct: 262 FTISSG 267


>gi|294629194|ref|ZP_06707754.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292832527|gb|EFF90876.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 649

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 108/365 (29%), Gaps = 46/365 (12%)

Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN----FVLLSRGEDPDSFIRCYGKTAF 371
            I+L  DG+      + + I ++    +    +             DP S      + + 
Sbjct: 110 TIILQRDGEVLSPDDSRRIIQMIAPESVSQFFLFDGELLRQYEDLLDPRSEKGAELERSI 169

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           E+++   +              +     E+             +K+        Q +RDR
Sbjct: 170 ERVLGIPIVGNAKADAVAISRAASKQMSEQYAANHETNRMGLALKEA-------QDVRDR 222

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           LQ+ + +  ++         +      ++  +Q ++               RE A +  L
Sbjct: 223 LQRDYSEIESQIEAGQNRISELDVLMREQQKAQHILGKIDQLEVQIAGVEGREKAAIAAL 282

Query: 492 ------INHPAILQEQYQELADIR----YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                 +    + +   + LA++         EL +  + +                + +
Sbjct: 283 DELSTDLWKAVLARSATERLAEVDGAVAMAETELSEAAAAMRDLTHLHAGNDCPVCRREI 342

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-----------LYKRFRL 590
            +    EL +++ +           T  + +  ++   Q LA              R   
Sbjct: 343 PQALHAELTEKIKQIASTGHQEDVQTRLDRLRAKRRTLQTLAQQDVRLIVERDANLRQVR 402

Query: 591 LSRQ-----KEEIEKQIAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQEA 636
           L ++       E+ +QI ++    E          E+ A L      +     QI  +EA
Sbjct: 403 LEKEELYGDIAELRQQIDEIGQSEEQVRALSTERDERHAKLERDKDRLAALREQIRKKEA 462

Query: 637 MIEGF 641
            IE F
Sbjct: 463 DIEDF 467


>gi|289450623|ref|YP_003474672.1| hypothetical protein HMPREF0868_0334 [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289185170|gb|ADC91595.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 2451

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 8/110 (7%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
             +        E     L +  F    K+   +   A +    T   + D++  Y+Q + 
Sbjct: 571 KFYKVTGDNAIETFEDELIKNSFKPEEKKTIEENTRARIEKEVTNEVVEDLKYKYKQEVE 630

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
              +     + KEE++K+I   + K E E+         EV  ++ + ++
Sbjct: 631 EKVKKEYEQKIKEEVKKEIEDGSLKPEDEE--------KEVKKRLAEKQA 672


>gi|281348983|gb|EFB24567.1| hypothetical protein PANDA_010461 [Ailuropoda melanoleuca]
          Length = 1336

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 99/286 (34%), Gaps = 35/286 (12%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 771  MSEKQLKQENNHLMEMKMSLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 830

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   +                 K  S++L +S   +    L K
Sbjct: 831  ELKEECEEKAKLCKELQQKKQDLQEERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 890

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 891  EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 942

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 943  NKLKDA--QEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1000

Query: 594  ---QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                    EK+  ++  + ++E+   L   + +   +++++++Q A
Sbjct: 1001 SDTDMRRKEKENRKLHMELKSER-EKLTQQMIKYQKELNEMQAQIA 1045


>gi|148763623|gb|ABR10605.1| nonmuscle myosin II-C2 [Mus musculus]
          Length = 2033

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 71/252 (28%), Gaps = 20/252 (7%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            RE ++      + R   E          + ++     ++ +  RL +  +          
Sbjct: 1418 RELQSTQAQLSEWRRRQEEEAAVLEAGEEARRRAAREAETLTQRLAEKTEAVERLERARR 1477

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            R  ++        G  ++L+ +   K +   +    E A +L  +     ++ + +E   
Sbjct: 1478 RLQQELDDATVDLGQQKQLLSTLEKKQRKFDQLLAEEKAAVLRAVEDRERIEAEGREREA 1537

Query: 508  IRYD---------------NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                                 + + L + L +    +              +   +    
Sbjct: 1538 RALSLTRALEEEQEAREELERQNRALRAELEALLSSKDDVGKNVHELERARKAAEQAASD 1597

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQ-----QALALYKRFRLLSRQKEEIEKQIAQVTA 607
            L  QV +        E   + +    Q         L  R      ++ ++ KQ+     
Sbjct: 1598 LRTQVTELEDELTAAEDAKLRLEVTVQALKAQHERDLQGRDDAGEERRRQLAKQLRDAEV 1657

Query: 608  KGEAEKTAILIS 619
            + + E+    ++
Sbjct: 1658 ERDEERKQRALA 1669



 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 84/271 (30%), Gaps = 7/271 (2%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQAI 428
             + +L ++  PL+ +  + E          +  EL+      +  ++ +  +       +
Sbjct: 887  QWWRLFIKVKPLLQVTRQDEVLQARAQELQKVQELQQQSAREVGELQGRVAQLEEERTRL 946

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             ++L+   +          R   +           +  +       +  +    R    +
Sbjct: 947  AEQLRAEAELCSEAEETRARLAARKQELELVVTELEARVGEEEECSRQLQSEKKRLQQHI 1006

Query: 489  LTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              L +H    +   Q+L   +      ++K    L     +      E          F 
Sbjct: 1007 QELESHLEAEEGARQKLQLEKVTTEAKMKKFEEDLLLLEDQNSKLSKERRLLEERLAEFS 1066

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE----EIEKQIA 603
                + + +V+         EA I D+    ++     +    L R+ +    E+++Q+ 
Sbjct: 1067 SQAAEEEEKVKSLNKLRLKYEATISDMEDRLKKEEKGRQELEKLKRRLDGESSELQEQMV 1126

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +   + E E  A L     E+   + + E +
Sbjct: 1127 EQKQRAE-ELLAQLGRKEDELQAALLRAEEE 1156


>gi|156537438|ref|XP_001606987.1| PREDICTED: similar to CG34146-PA [Nasonia vitripennis]
          Length = 1868

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 42/402 (10%), Positives = 113/402 (28%), Gaps = 28/402 (6%)

Query: 251  FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310
               A     KS  +  R  S    +L +       L +A  Q   +   T  ++ +L  +
Sbjct: 1071 LDMARERFDKSQIEMRRLQSEREKLLADNERLSFELERAQSQLAKAQAATDKSQEELGRM 1130

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR-VNFVLLSRGEDPDSFIRCYGKT 369
                 ++    D     +R A    + +          V       G+  +S        
Sbjct: 1131 QLEIEKMYEKHDRQQAEVRKAQSEAERLRQEAENAREEVERYAARFGKREESLRMKEEHE 1190

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
              +         ++       E       +   E     +     ++ +  R      +R
Sbjct: 1191 RLKLECDRLRDRLEK---ATAELERSRRTEREFETRSESRMGKYALEQEVER------LR 1241

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            +RL+    +     +      ++    + Q   ++          + +K+   R      
Sbjct: 1242 ERLESREAELKRSQNHAQELEQRYHELQLQLERTREEAAKMQQAQERNKQEQERAR---- 1297

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD----------FVEQKYFLPEEIHQ 539
              I    +     +  A       + +KL   +               E      E +  
Sbjct: 1298 --IEAEKLKDRYDKLKAKADALEADNEKLRVEIVRLERLMQTEGKTRSESASIEVERLRA 1355

Query: 540  RLCERGFGELLKQLD--RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             L +        +L+  +  ++    +        ++ Q  ++   L     LL  +++ 
Sbjct: 1356 SLEKAITARDQVELEAGQLAKELEKSAQLINQKQEEINQSKKEHERLLTEANLLKEERDA 1415

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +  ++ +     +A+    +  +  E+ +   + +   A++E
Sbjct: 1416 VRTELRRSQQVQQAQGNEEIARLHQELQVAQRERDKMAAILE 1457


>gi|153854478|ref|ZP_01995756.1| hypothetical protein DORLON_01751 [Dorea longicatena DSM 13814]
 gi|149753004|gb|EDM62935.1| hypothetical protein DORLON_01751 [Dorea longicatena DSM 13814]
          Length = 667

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 88/280 (31%), Gaps = 24/280 (8%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           + + V + P                 P    + E+ ++     I D  L    ++ I ++
Sbjct: 392 QVMFVSATPGKYEEEHELLRAEQVIRPTGLLDPEVEVRPVEGQIDD--LIGEVNKEIANK 449

Query: 432 LQQLFQKYITEHSGYGRYWKK--NARHRDQKGPSQRLMQSSLVKGKLSKKPS-LREAALL 488
            + L        +     + +    R R        L ++ +V+         L    LL
Sbjct: 450 HKILITTLTKRMAEDLTDYMRELGIRVRYLHSDIDTLERTEIVRDMRLDVFDVLVGINLL 509

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              ++ P I      +     +  +E   + +   +    + + +   ++          
Sbjct: 510 REGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAARNAEGHVI---MYADTITDSMRA 566

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR----------------FRLLS 592
            L +  R+      ++         +++  +  +A+ K+                 + L 
Sbjct: 567 ALDETQRRREVQMAYNEEHGITPKTIQKAVRDLIAVSKKVAASEVQMEKDPESMSEKELE 626

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +  +E+EKQ+ +  A    E  A L   L E+   + +I+
Sbjct: 627 KLIKELEKQMKKAAADLNFEAAAELRDKLIELKKTLQEIK 666


>gi|296206555|ref|XP_002750263.1| PREDICTED: uncharacterized protein KIAA0562-like [Callithrix
           jacchus]
          Length = 884

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 35/132 (26%), Gaps = 5/132 (3%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
               + +         L   ++      P        +  +   L  L   +      + 
Sbjct: 153 DPADFSDESNSASREKLIDHYLGHSSEDPALEGSYARKSDYISPLDDLAFDMYQDPEVAQ 212

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILISILH 622
                    R+  Q+    Y +   L +   +++K   ++ +   +           +  
Sbjct: 213 IIRKLDERKREAVQKERYDYAKK--LKQAIADLQKVGERLGRYEVEKRCAVEKEDYDLAK 270

Query: 623 EVHIQIHQIESQ 634
           E   Q+ Q  ++
Sbjct: 271 EKKQQMEQYRAE 282


>gi|261408032|ref|YP_003244273.1| chromosome segregation protein SMC [Paenibacillus sp. Y412MC10]
 gi|261284495|gb|ACX66466.1| chromosome segregation protein SMC [Paenibacillus sp. Y412MC10]
          Length = 1189

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 68/208 (32%), Gaps = 21/208 (10%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           + +     I +         ++   R     +  +++    K +  +K    E  LL   
Sbjct: 133 IGKEAYSIIGQGRIEEILSTRSEDRRGIFEEASGIVKYKSRKKESVRKLDETEQNLLRI- 191

Query: 492 INHPAILQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                ++ E   ++  ++  +      ++L   L    +    +  E+IH    E     
Sbjct: 192 ---HDLVTELEDQIGPLKEQSEKAIRYKELREELKHKEISLYVYQIEQIHTSWSEANAK- 247

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L+QL  +        +  +A +   R   +Q          L ++ E+++ Q+ Q +  
Sbjct: 248 -LEQLKEEQLALSTVVSAHDAKLESDRSALRQ----------LEQEVEDLQSQLLQFSEL 296

Query: 609 GEAEK--TAILISILHEVHIQIHQIESQ 634
            E  +    +L      +     Q+E  
Sbjct: 297 FEKSEGYGEVLKERRRNLERTREQLEES 324


>gi|239617599|ref|YP_002940921.1| binding-protein-dependent transport systems inner membrane
           component [Kosmotoga olearia TBF 19.5.1]
 gi|239506430|gb|ACR79917.1| binding-protein-dependent transport systems inner membrane
           component [Kosmotoga olearia TBF 19.5.1]
          Length = 435

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/118 (10%), Positives = 45/118 (38%), Gaps = 11/118 (9%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQL-DRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                 +    +++   +  +   ++ K+L + ++ +        E  I +++   ++ +
Sbjct: 83  DFINISEANDLDKMINFIDRKTGSKIPKKLLEEKISELETLVTQNEERINELKTQMKREI 142

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIE 639
               R   L+R+  +I + +     +            L E +  Q+ + + ++ ++E
Sbjct: 143 LAINR---LNREIVKIHQNLKLFDPE------DETFQELRENLQNQLQEKQQEKILVE 191


>gi|170741331|ref|YP_001769986.1| hypothetical protein M446_3146 [Methylobacterium sp. 4-46]
 gi|168195605|gb|ACA17552.1| ABC-1 domain protein [Methylobacterium sp. 4-46]
          Length = 455

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 51/173 (29%), Gaps = 6/173 (3%)

Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
            + +   +  + D  L   Y+Q ++    Q     +       R   +       +  S 
Sbjct: 62  IMKVAQLLATVPD-LLPPEYAQELQKL--QSEAPPMGAAFVKRRMAAELGPDWQGRFASF 118

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-- 522
            L  ++        +   RE   L   + +P +      +L  +       ++L   +  
Sbjct: 119 DLRPAAAASLGQVHRAVSREGEALACKLQYPDMQSAVEADLKQLEMAFALHRRLRVAIDT 178

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
                E    + EE+     E     L  ++ R + +  +  A    +   + 
Sbjct: 179 REIAKEIGDRVREEL-DYQREAKHAALYAEVLRDMPNVRVPVAHPALSTKRLL 230


>gi|2546937|emb|CAA37309.1| muscle myosin heavy chain [Drosophila melanogaster]
          Length = 1175

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 811  DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 870

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 871  NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 923

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 924  EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 983

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 984  NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1043

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1044 KGGKKAIQKLEQRVRELENE 1063


>gi|28574245|ref|NP_724047.2| cytoplasmic linker protein 190, isoform B [Drosophila melanogaster]
 gi|281365117|ref|NP_001162996.1| cytoplasmic linker protein 190, isoform M [Drosophila melanogaster]
 gi|21430156|gb|AAM50756.1| LD05834p [Drosophila melanogaster]
 gi|28380391|gb|AAF53605.2| cytoplasmic linker protein 190, isoform B [Drosophila melanogaster]
 gi|272407076|gb|ACZ94282.1| cytoplasmic linker protein 190, isoform M [Drosophila melanogaster]
          Length = 1689

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 80/242 (33%), Gaps = 20/242 (8%)

Query: 405  EIHLKNCINHIKDQKLR-YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
               ++     IKD  ++     + + ++LQ    +   + +      +   + ++ +G  
Sbjct: 1302 LQQVQEANGDIKDSLVKVEELVKVLEEKLQAATSQLDAQQATNKELQELLVKSQENEG-- 1359

Query: 464  QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLW 519
              L   SL   +  ++       L   L      L+E   +L +    +        ++ 
Sbjct: 1360 -NLQGESLAVTEKLQQLEQANGELKEALCQKENGLKELQGKLDESNTVLESQKKSHNEIQ 1418

Query: 520  SFLFSDFVEQKYFLPE--EIHQRLCE--RGFGELLKQLDR--QVRDAGLWSATTEANIVD 573
              L     +++    E  ++ ++L +  +   EL K L +   + + G    T  A    
Sbjct: 1419 DKLEQAQQKERTLQEETSKLAEQLSQLKQANEELQKSLQQKQLLLEKGNEFDTQLAEYQK 1478

Query: 574  VRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            V      A ++       L  +  E+E  + Q       +          E+  Q+  +E
Sbjct: 1479 VIDEMDDAASVKSALLEQLQNRVAELETALRQAN-----DAQKTAYLETKELRRQLESLE 1533

Query: 633  SQ 634
             +
Sbjct: 1534 LE 1535



 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/271 (10%), Positives = 89/271 (32%), Gaps = 16/271 (5%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            + +   E+    +L      +  E          +       +      +++        
Sbjct: 975  HAELQAERSSSSALHTKLSKFSDEIATGHKELTSKADAWSQEMLQKEKELQE-------L 1027

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            +      Q    K   E     + ++++ ++  ++    +     L  G  +    L+E 
Sbjct: 1028 RQQLQDSQDSQTKLKAEGERKEKSFEESIKNLQEEVTKAKTENLELSTGTQTTIKDLQER 1087

Query: 486  ALLLTL-INHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
              +    + H   +  E  Q++AD++    E  ++ +   S    +   + E +     E
Sbjct: 1088 LEITNAELQHKEKMASEDAQKIADLK-TLVEAIQVANANISATNAELSTVLEVLQAEKSE 1146

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                  L +++  +    L    T     ++++ + Q     K+F  L  + ++ ++   
Sbjct: 1147 TNHIFELFEMEADMNSERLIEKVTGI-KEELKETHLQLDERQKKFEELEEKLKQAQQSEQ 1205

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++      +++      L E+   + +++  
Sbjct: 1206 KL-----QQESQTSKEKLTEIQQSLQELQDS 1231


>gi|7662180|ref|NP_055519.1| glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein
           [Homo sapiens]
 gi|20140432|sp|O60308|K0562_HUMAN RecName: Full=Uncharacterized protein KIAA0562
 gi|55961626|emb|CAI17369.1| KIAA0562 [Homo sapiens]
 gi|57209226|emb|CAI42527.1| KIAA0562 [Homo sapiens]
 gi|119591889|gb|EAW71483.1| glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein,
           isoform CRA_c [Homo sapiens]
 gi|119591890|gb|EAW71484.1| glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein,
           isoform CRA_c [Homo sapiens]
 gi|168278651|dbj|BAG11205.1| KIAA0562 protein [synthetic construct]
          Length = 925

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 35/132 (26%), Gaps = 5/132 (3%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
               + +         L   ++      P        +  +   L  L   +      + 
Sbjct: 153 DPADFSDESNTASREKLIDHYLGHNSEDPALEGTYARKSDYISPLDDLAFDMYQDPEVAQ 212

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILISILH 622
                    R+  Q+    Y +   L +   +++K   ++ +   +           +  
Sbjct: 213 IIRKLDERKREAVQKERYDYAKK--LKQAIADLQKVGERLGRYEVEKRCAVEKEDYDLAK 270

Query: 623 EVHIQIHQIESQ 634
           E   Q+ Q  ++
Sbjct: 271 EKKQQMEQYRAE 282


>gi|84500426|ref|ZP_00998675.1| type I secretion membrane fusion protein, HlyD family protein
           [Oceanicola batsensis HTCC2597]
 gi|84391379|gb|EAQ03711.1| type I secretion membrane fusion protein, HlyD family protein
           [Oceanicola batsensis HTCC2597]
          Length = 436

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 1/111 (0%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYK 586
           E       ++  RL +      L  ++ Q+ +        EA         +   L    
Sbjct: 72  EGDLVESGQLLVRLDDTQLRSQLAIIEGQLFELMARRGRLEAERDGREDLDFDPLLLEAA 131

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           + +  +R+  E + ++A+       ++   L     ++  QI  I++Q A 
Sbjct: 132 QTKAEARELMEGQTRLAEARLASVEKEIEQLEKRRSQIDNQIEGIDAQLAA 182


>gi|326478556|gb|EGE02566.1| anucleate primary sterigmata protein B [Trichophyton equinum CBS
           127.97]
          Length = 1607

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 77/235 (32%), Gaps = 14/235 (5%)

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK-KNARHRDQKGPSQRL 466
            +   +  KD       ++   +   +  +  I +        + +  R+R       ++
Sbjct: 638 AREERDMWKDILEAETAAREQSEEENKRLRNQILQLENDISSHQCRETRYRKGHQSFSQV 697

Query: 467 MQSSLVKGKLSKKPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                     +     RE   LL     + A+ +E   + + +   N E +KL+  +   
Sbjct: 698 GSDYESSRSYATSNPTREDFELLRQ--ENNALRREVTAQTSMLTSRNREKEKLYQEIEDL 755

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            ++++          + +R       +   Q  D        +       +   Q  AL 
Sbjct: 756 KLDRRNEGRSIAGDSIFDRSASRAQSRAMSQASD-----NDRDTLENRNGELRDQVSALK 810

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ----IHQIESQEA 636
              + L  Q +E   +++ V    +AE    +   L ++  Q    +H IE +EA
Sbjct: 811 LDNQGLRSQLDEYANELSSVERDYQAE-LDRVSQELRDLQAQRDQALHAIEEREA 864


>gi|322704732|gb|EFY96324.1| Rossmann-fold NAD(P)(+)-binding protein [Metarhizium anisopliae
           ARSEF 23]
          Length = 556

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 82/218 (37%), Gaps = 20/218 (9%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           +R++L Q   K  T      +        R      +  ++   V     K     E AL
Sbjct: 52  LREKLGQKDFKISTLIRDSDQIKIDLDDSRQIIRAQEARLKKQDVDRASLKAE--IEEAL 109

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
             T+ +    +QE++    ++     EL+ L S L S   +       ++ ++L      
Sbjct: 110 NGTMQDSGKAMQEKFALTRELNRIKPELEHLQSQLTSF--QATVAERNDLRRQLDSLEV- 166

Query: 548 ELLKQLDRQVRDA-GLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQV 605
               +L+ + R    L S   +A   +++   ++A   L    R   + K+E E+++A  
Sbjct: 167 ----ELENEKRSKLRLQSRDDDAATTELKSRLEKAEQKLAAEKREREKMKKEHERELASA 222

Query: 606 TAKGE---------AEKTAILISILHEVHIQIHQIESQ 634
            A+ E          EK+  L S L  V  Q+   +S+
Sbjct: 223 NAENERLEERISDLKEKSKALQSELKGVKEQLEDAQSE 260


>gi|297792573|ref|XP_002864171.1| oxidoreductase/ transition metal ion binding protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297310006|gb|EFH40430.1| oxidoreductase/ transition metal ion binding protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 749

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 55/149 (36%), Gaps = 17/149 (11%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVE-----QKYFLPEEIHQRLCERGFGELL 550
              +   +ELA I     E + +   + S         +K        + L E+   + +
Sbjct: 432 DAFEVVGEELARI-----EAEAMAENVVSAHNALVTQVEKDINASFEKEFLREKEIVDAV 486

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA-----QV 605
           ++L  + +         +    +     ++  ++      L+R + E+E+Q+      + 
Sbjct: 487 EKLAEEAKSELARLRVEKE--EETFALERERTSIETEMEALARIRNELEEQLQSLASNKA 544

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQ 634
               E E+   L   + + + +I +++++
Sbjct: 545 EMSYEKERFDRLQKQVEDENQEILRLQNE 573


>gi|239946475|ref|ZP_04698231.1| toprim domain protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920751|gb|EER20778.1| toprim domain protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 1063

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 55/458 (12%), Positives = 123/458 (26%), Gaps = 43/458 (9%)

Query: 52  SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111
           S   N SKG +   S   KG+   F++     S  +S++ +A ++G+             
Sbjct: 65  SLSMNLSKGTWIRHSSGKKGNIFGFVAEGACVSKRQSLEIVAELSGIRAESSSYD----- 119

Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171
                  R    ++           +K       ++   +  I         D     + 
Sbjct: 120 ------YRAHVASSR---------ANKEKMQEQTQQKQANEWIVAQDKINNADIFDPYKH 164

Query: 172 HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231
                  +  + + A      D +          +       +   + +        ++ 
Sbjct: 165 LKGMMQHNILEAVYA----YKDANDKLLGHVVRFVSKENGKKQTLPVTYCYNAAKDEQAW 220

Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291
           +     +       K ++    A               SS  I++VEG    ++  +   
Sbjct: 221 RLKGFTDKG----DKPIFGIEKA-------------ALSSKPILIVEGEKVAIAAAKILP 263

Query: 292 QNVVSS-LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350
              V S +G +    ++         +++  D D  G +AA    D +         V+ 
Sbjct: 264 DYSVVSWMGGSNAADKVNWNQLQWRDVIIWPDNDKAGFKAAEVIKDKINKANDHIGFVSV 323

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD-ERAELEIHLK 409
           V  +  +      +      ++        +     K   EN      D  + +  +   
Sbjct: 324 VDPTTLKFNGGVHKDLLPEKWDLADRLPEGMTTSNVKEAIENVRAAHLDLNQIQSVLQST 383

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
           N  +  +    R  + +  + ++    Q      + Y       +               
Sbjct: 384 NASDASQQLVERNIWQEVFKGKIVGGEQITNLAANEYKAATFFRSEEASNYVKYLEATGK 443

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
             V     K  S     LL +L      L E  + L +
Sbjct: 444 GGVAHDYLKYDSPMYQDLLTSLATRDERLSENIKSLGN 481


>gi|257792358|ref|YP_003182964.1| hypothetical protein Elen_2624 [Eggerthella lenta DSM 2243]
 gi|257476255|gb|ACV56575.1| hypothetical protein Elen_2624 [Eggerthella lenta DSM 2243]
          Length = 473

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI----LHEVHIQIHQIES- 633
            +   L ++ R + R+  E ++++    A+ +A+++A  ++        +  +   +   
Sbjct: 295 DEVYRLTQKQRYIERRIREAKRELRGAQAEYDADRSAEKLAEVMKAKQAIKSRQEAMRKL 354

Query: 634 -QEA 636
            +EA
Sbjct: 355 LEEA 358


>gi|187940165|gb|ACD39295.1| hypothetical protein PACL_0507 [Pseudomonas aeruginosa]
          Length = 649

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 40/334 (11%), Positives = 99/334 (29%), Gaps = 25/334 (7%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
               + A   +                 LS  E P   +    +    + ++ ++   + 
Sbjct: 172 HQAWQIALALLSRDQECRFDHVLEWRSSLSDSESPARGLNRTERLETLRALLNAIDPSEQ 231

Query: 385 LWK----------RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
             +          R  E    +   E  +L   L   +    D+  +      I  R  Q
Sbjct: 232 TLRIDIAAMSESSRSQEQEIGHRAWEIRKLRKQLLEVLGVTDDELSQGTLGVEILRRAAQ 291

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
                 T+  G G     ++  +  +     + +     G+        E A+      +
Sbjct: 292 ERLAAETKSDGAGATSDLDSVRQAHESAQAEVARVQADIGRQEAVIPAIERAISAIKGEY 351

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFS--DFVEQKYFLPEEIHQRLCE-----RGFG 547
           PA+     +      Y     +     + +    +  K    E    RL           
Sbjct: 352 PALAYSLKEA---ENYPCPICEVPIDRVLASQCGLSHKVPDLEACKARLENGKKVLNDEQ 408

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR----FRLLSRQKEEIEKQIA 603
           + L+  +  ++      A  + +     Q Y+  L L ++    + +  +  +++E+  +
Sbjct: 409 DRLESANSLLKQLRPELALAKQDATRKEQHYRNLLKLREQRDGAWYVARKAVDDVERLAS 468

Query: 604 QVTAKGEAE-KTAILISILHEVHIQIHQIESQEA 636
            +  +  AE +     + + +   +I  ++SQ A
Sbjct: 469 LLEQQQSAEVRLDRHQTDIEQARERIGALQSQNA 502


>gi|251795070|ref|YP_003009801.1| ABC transporter [Paenibacillus sp. JDR-2]
 gi|247542696|gb|ACS99714.1| ABC transporter related [Paenibacillus sp. JDR-2]
          Length = 642

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/118 (10%), Positives = 36/118 (30%), Gaps = 2/118 (1%)

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFGEL-LKQLDRQVRDAGLWSATTEANIV 572
           L K+   +                  + +     E  L+   +    +         +  
Sbjct: 508 LNKMAERIVELTPAGTEHFLGNYDDMIEKKAELEEARLEAAAKLASKSNQPVVEAPTSYE 567

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             +Q  ++  +  ++   L ++   +E+QIA+   +            + E+  +I +
Sbjct: 568 MDKQAKREERSRLRKLEQLEQEIATLEEQIAEFEVQLTDPAIFNDYMAIQEIQTKIEE 625


>gi|45385726|gb|AAS59740.1| autotransporter adhesin precursor [Aggregatibacter
           actinomycetemcomitans]
          Length = 912

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 94/285 (32%), Gaps = 26/285 (9%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +        + +T++++    + +  +    K  +N  + +  R   +Q +  +  ++ 
Sbjct: 57  NAQINNQPSSQAKTKSKTNIKKNMQNNISNSAKESVNTYQTEIQRITAAQKLARQKAEMA 116

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           QK   E     +  +K  + + +    ++     + +  L  K  +RE  +         
Sbjct: 117 QKE-AEARAIAQVKEKRQQSQIKAQELEQKKAELVQREYLEAKRQVREQEMAR---QKAE 172

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR--LCERGFGELLKQLD 554
             ++  + LA ++  N+  Q+L     +   E +    E+   R  +        + +  
Sbjct: 173 EDRKVAEALAAVKLKNSTQQRLTKEQLAAQKEAERLANEQEIARKKIKANELQRAINEQS 232

Query: 555 RQVRDAGLWSATTE----ANIVDVRQGYQQ-ALALYKRFRLLSRQKEE------------ 597
           +    A +     E     +     +  +Q A+   ++   L+  + +            
Sbjct: 233 KLAEVARVKRTLIEQKQVISPQKEDEILRQQAIEEQRKKEALANAERKRLEAERLAREEE 292

Query: 598 IEKQIAQVTAKGEAEKTAILISIL---HEVHIQIHQIESQEAMIE 639
           I  Q A+   K   E        L    E+  Q    E ++  IE
Sbjct: 293 IANQKAEEARKKSEELARRERDRLAREQEIARQKAAEEERQRAIE 337


>gi|24584806|ref|NP_609835.2| cytoplasmic linker protein 190, isoform A [Drosophila melanogaster]
 gi|30580382|sp|Q9VJE5|CL190_DROME RecName: Full=Restin homolog; AltName: Full=Cytoplasmic linker
            protein 190; AltName: Full=Microtubule-binding protein
            190; AltName: Full=d-CLIP-190
 gi|7298379|gb|AAF53604.1| cytoplasmic linker protein 190, isoform A [Drosophila melanogaster]
          Length = 1690

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 80/242 (33%), Gaps = 20/242 (8%)

Query: 405  EIHLKNCINHIKDQKLR-YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
               ++     IKD  ++     + + ++LQ    +   + +      +   + ++ +G  
Sbjct: 1303 LQQVQEANGDIKDSLVKVEELVKVLEEKLQAATSQLDAQQATNKELQELLVKSQENEG-- 1360

Query: 464  QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLW 519
              L   SL   +  ++       L   L      L+E   +L +    +        ++ 
Sbjct: 1361 -NLQGESLAVTEKLQQLEQANGELKEALCQKENGLKELQGKLDESNTVLESQKKSHNEIQ 1419

Query: 520  SFLFSDFVEQKYFLPE--EIHQRLCE--RGFGELLKQLDR--QVRDAGLWSATTEANIVD 573
              L     +++    E  ++ ++L +  +   EL K L +   + + G    T  A    
Sbjct: 1420 DKLEQAQQKERTLQEETSKLAEQLSQLKQANEELQKSLQQKQLLLEKGNEFDTQLAEYQK 1479

Query: 574  VRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            V      A ++       L  +  E+E  + Q       +          E+  Q+  +E
Sbjct: 1480 VIDEMDDAASVKSALLEQLQNRVAELETALRQAN-----DAQKTAYLETKELRRQLESLE 1534

Query: 633  SQ 634
             +
Sbjct: 1535 LE 1536



 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/271 (10%), Positives = 89/271 (32%), Gaps = 16/271 (5%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            + +   E+    +L      +  E          +       +      +++        
Sbjct: 976  HAELQAERSSSSALHTKLSKFSDEIATGHKELTSKADAWSQEMLQKEKELQE-------L 1028

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            +      Q    K   E     + ++++ ++  ++    +     L  G  +    L+E 
Sbjct: 1029 RQQLQDSQDSQTKLKAEGERKEKSFEESIKNLQEEVTKAKTENLELSTGTQTTIKDLQER 1088

Query: 486  ALLLTL-INHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
              +    + H   +  E  Q++AD++    E  ++ +   S    +   + E +     E
Sbjct: 1089 LEITNAELQHKEKMASEDAQKIADLK-TLVEAIQVANANISATNAELSTVLEVLQAEKSE 1147

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                  L +++  +    L    T     ++++ + Q     K+F  L  + ++ ++   
Sbjct: 1148 TNHIFELFEMEADMNSERLIEKVTGI-KEELKETHLQLDERQKKFEELEEKLKQAQQSEQ 1206

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++      +++      L E+   + +++  
Sbjct: 1207 KL-----QQESQTSKEKLTEIQQSLQELQDS 1232


>gi|89098684|ref|ZP_01171566.1| Smc [Bacillus sp. NRRL B-14911]
 gi|89086646|gb|EAR65765.1| Smc [Bacillus sp. NRRL B-14911]
          Length = 1188

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 71/230 (30%), Gaps = 11/230 (4%)

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            I  Q        +  +  + +F++         R  K  A+  + +    R+    + +
Sbjct: 139 SIISQGKVEEILNSKAEDRRSIFEEAAGVLKYKTRKKKAEAKLLETQENLNRV-NDIVYE 197

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN---------NELQKLWSFLFS 524
            +   +P   ++++    +     L++    L     ++           L+KL     +
Sbjct: 198 LESQVEPLKIQSSIAKDYLQQKEELEKIEVALTAFEIEDLHGKWEALSAVLEKLKKEEEA 257

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                     E    R       E +  L   +  A       E     +++  + A   
Sbjct: 258 LGGAIGEKEAEIEVARAGIADLDESINDLQGVLLHASEELEKLEGRKEVLKERKKNASHN 317

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +    +  E E  + +     + E   +L     E+  ++ + +++
Sbjct: 318 KEQLKRNIEELGEKEASLKE-RKAMQQEIADVLQREAAELQKKLREKQAE 366


>gi|332245960|ref|XP_003272119.1| PREDICTED: coiled-coil alpha-helical rod protein 1-like isoform 1
           [Nomascus leucogenys]
 gi|332245962|ref|XP_003272120.1| PREDICTED: coiled-coil alpha-helical rod protein 1-like isoform 2
           [Nomascus leucogenys]
          Length = 796

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 581 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 640

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 641 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLAWRLQELERDKNLMLAT 700


>gi|319935361|ref|ZP_08009799.1| hypothetical protein HMPREF9488_00630 [Coprobacillus sp. 29_1]
 gi|319809769|gb|EFW06170.1| hypothetical protein HMPREF9488_00630 [Coprobacillus sp. 29_1]
          Length = 337

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 40/140 (28%), Gaps = 1/140 (0%)

Query: 68  HVKG-DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126
            + G   L FL  +   +F+E+   +A    V  P   P  EK+   +  + +  +   +
Sbjct: 58  GIGGKSALDFLIKVDNYTFLEAANIIAENINVKAPEYVPYSEKERDKKLQIPQRAKTDQN 117

Query: 127 FFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEA 186
              + L       +  +  +  +                  +     ++        +  
Sbjct: 118 AIDYLLSRGISFNIIKHCIDHYLLYENEYFSPSTNKVYQNVAFIGWDKKTNKPRHIALRG 177

Query: 187 GLLIDGDNSATSYDRFRNRL 206
                  ++  S  R+   +
Sbjct: 178 INQDFIGDATGSDKRYSFCI 197


>gi|312620999|ref|YP_003993727.1| incf plasmid conjugative transfer DNA-nicking and unwinding protein
            trai [Photobacterium damselae subsp. damselae]
 gi|311872720|emb|CBX86814.1| IncF plasmid conjugative transfer DNA-nicking and unwinding protein
            TraI [Photobacterium damselae subsp. damselae]
          Length = 1980

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 12/80 (15%)

Query: 59   KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
            +G++  ++   KG+ ++ + +    SF E+V   A      L   +     + +    L+
Sbjct: 1618 RGYFRDWTTGDKGNLINLIMSAKSFSFKEAVNF-AEQI---LTEPENNNLIENEKHDKLV 1673

Query: 119  RLI--------EVATDFFHH 130
              +        E A  +F  
Sbjct: 1674 DTLPKQVSELKERAMSYFEQ 1693


>gi|301778641|ref|XP_002924736.1| PREDICTED: transcription elongation regulator 1-like isoform 2
           [Ailuropoda melanoleuca]
          Length = 1063

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 596 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 655

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 656 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 703

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 704 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 752

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 753 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 812

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 813 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 865


>gi|297278830|ref|XP_002801623.1| PREDICTED: protein Hook homolog 1 isoform 2 [Macaca mulatta]
          Length = 686

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 99/304 (32%), Gaps = 25/304 (8%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D             + ++  + 
Sbjct: 227 DDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQ 286

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      +R +++ L +  +          ++  +    +   +   +            
Sbjct: 287 KLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSE 346

Query: 481 SLREAALLLTLIN----HPAILQEQYQELADIRYDNNELQKLW-----SFLFSDFVEQKY 531
           S R   L   +      H A+L+E+ + +          ++L          +       
Sbjct: 347 SKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTGASAA 406

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALA------- 583
              E +   +    + E+  +L  + +   L    +E   I ++++  +Q          
Sbjct: 407 KSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELET 466

Query: 584 ----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQE 635
                 +R R L +Q E+++K + +  +K E E ++ L   L     ++     +++ ++
Sbjct: 467 EQRLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQ 526

Query: 636 AMIE 639
            +IE
Sbjct: 527 ELIE 530


>gi|288870068|ref|ZP_06112799.2| putative toprim domain protein [Clostridium hathewayi DSM 13479]
 gi|288868573|gb|EFD00872.1| putative toprim domain protein [Clostridium hathewayi DSM 13479]
          Length = 347

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQR-LAAIA 96
           ++ F+    G+ + F     G S +E+++  L + A
Sbjct: 70  FHWFTTGKHGNIVEFAMEYFGLSKVEAMESVLGSRA 105


>gi|237713473|ref|ZP_04543954.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. D1]
 gi|262407259|ref|ZP_06083807.1| ATP-dependent chaperone ClpB [Bacteroides sp. 2_1_22]
 gi|294644668|ref|ZP_06722418.1| ATP-dependent chaperone protein ClpB [Bacteroides ovatus SD CC 2a]
 gi|294809071|ref|ZP_06767793.1| ATP-dependent chaperone protein ClpB [Bacteroides xylanisolvens SD
           CC 1b]
 gi|298482679|ref|ZP_07000863.1| ATP-dependent chaperone protein ClpB [Bacteroides sp. D22]
 gi|229446455|gb|EEO52246.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. D1]
 gi|262354067|gb|EEZ03159.1| ATP-dependent chaperone ClpB [Bacteroides sp. 2_1_22]
 gi|292640002|gb|EFF58270.1| ATP-dependent chaperone protein ClpB [Bacteroides ovatus SD CC 2a]
 gi|294443796|gb|EFG12541.1| ATP-dependent chaperone protein ClpB [Bacteroides xylanisolvens SD
           CC 1b]
 gi|295087149|emb|CBK68672.1| ATP-dependent chaperone ClpB [Bacteroides xylanisolvens XB1A]
 gi|298271142|gb|EFI12719.1| ATP-dependent chaperone protein ClpB [Bacteroides sp. D22]
          Length = 862

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/212 (9%), Positives = 67/212 (31%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++           +  +++    + +      +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVQVDEPDNLSTISILRGLKERYENHHHVRIKDDAIIAAVELSS 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      +     +          +   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDKPKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           ++    L     +      +  +Q    L  + +    + E ++ +  +   +G+  K  
Sbjct: 437 EIIGKELAELKEQEKSFKAK--WQSEKTLMDKIQQNKVEIENLKFEAEKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L   + +   Q+  ++  +AMI+
Sbjct: 495 EIRYGKLQALDKEIEDTQKQLRDMQGDKAMIK 526


>gi|237743485|ref|ZP_04573966.1| replicative DNA helicase [Fusobacterium sp. 7_1]
 gi|256027044|ref|ZP_05440878.1| replicative DNA helicase [Fusobacterium sp. D11]
 gi|289765027|ref|ZP_06524405.1| replicative DNA helicase [Fusobacterium sp. D11]
 gi|229433264|gb|EEO43476.1| replicative DNA helicase [Fusobacterium sp. 7_1]
 gi|289716582|gb|EFD80594.1| replicative DNA helicase [Fusobacterium sp. D11]
          Length = 446

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/159 (8%), Positives = 50/159 (31%), Gaps = 4/159 (2%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K        E AL+  +  +  +  E    +    +   E   ++  +   + E K    
Sbjct: 7   KKIPHSLEAERALIGGIFYNQDLFDEIRDIVKAEDFYKVEHSVIYEAIEKVYSENKGIDG 66

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I + + +       +++ + + D      ++   +        +  A+ +R   +  +
Sbjct: 67  ILIEEEIKKSSSKNK-EEILQVLSDILDEITSSYNLLEYAN--LIKEKAMLRRLGNVGVE 123

Query: 595 KEEIE-KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             ++    +       +  +  +L    + +   I  ++
Sbjct: 124 ITQLAYNDVRVAEEIIDEAEGMVLNLSKNILKNSIVDMK 162


>gi|194746297|ref|XP_001955617.1| GF18854 [Drosophila ananassae]
 gi|190628654|gb|EDV44178.1| GF18854 [Drosophila ananassae]
          Length = 2219

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 83/248 (33%), Gaps = 40/248 (16%)

Query: 402  AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
             ++   + +    +++Q  R    +  + +     Q          +  ++  R +D   
Sbjct: 1624 QKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAARQERQAKERYGREKDVLQ 1683

Query: 462  PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY---DNNELQKL 518
              +  ++ +L   +L     L+E  L               +EL ++ +      E  +L
Sbjct: 1684 AEKFTLEQTLADTRLD--LDLKEEKLASL-----------QRELEEMTFGGGTEEEFAQL 1730

Query: 519  WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                       +     E   +  E    E+  Q+    +       T E    + R+  
Sbjct: 1731 R----------RSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRES 1780

Query: 579  QQALALYKRFR-LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE----- 632
            QQ     +  R    ++ + +E Q+     + E E+  +L+   HE+  ++  +E     
Sbjct: 1781 QQRDEELEEVRGNGYKKIKALECQL-----ETEHEERTLLLREKHELERRLSSMEDRDRV 1835

Query: 633  ---SQEAM 637
               ++EAM
Sbjct: 1836 DRDAEEAM 1843


>gi|190345860|gb|EDK37818.2| hypothetical protein PGUG_01916 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 986

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/282 (7%), Positives = 84/282 (29%), Gaps = 7/282 (2%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +D +           +          +      +        DE        K  +  I 
Sbjct: 504 KDLEQERATQTSKQKDVTDNSEELRNENNKLSASVKELQKKLDEVKAELERSKREVGSIT 563

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            +  +   ++ + +  +        +          + + +  K   + + + +L + +L
Sbjct: 564 SE--KEELNKRLSELAKYKSSDTSLKLEVSTLQVSLDHKEQSIKELRKEVEKLTLREKEL 621

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE- 535
           +   +L +   +    N+ +++ ++ + +        + + +   LF    E++    E 
Sbjct: 622 ADSLALTKRQKMELEANNKSLVSDKNELITKQELSFEKGKSMEQQLFKLQAEKQSLSTEL 681

Query: 536 -EIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             ++++     R    +  +L    +        ++     V     +           +
Sbjct: 682 EALNRKHENVARDKQHVASELSTFKQRYEELYMKSKEAQDKVDSMQDELSEARNMLSERT 741

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+   I + +          K   L++ +  +     ++E++
Sbjct: 742 RESNTIRRLLMDAEESL-KAKDGELMAEIQSLKEDKERVEAE 782


>gi|167619579|ref|ZP_02388210.1| chromosome segregation protein SMC [Burkholderia thailandensis Bt4]
          Length = 1170

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 67/212 (31%), Gaps = 22/212 (10%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAAL 487
              ++ L ++   +            R        SQ L +      + +++    +  +
Sbjct: 663 AQEIENLTRQVRAQALLSDEAKSAAIRAEAAHTQASQALTEVRAQAERATQRVHALQMDV 722

Query: 488 LLTLINHPAILQ---EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           L     H    Q   +  +EL +I     E + L +       E+      E+  R  + 
Sbjct: 723 LKLTQAHERYTQRSTQIREELEEIGAQIEEQRALRAE-SEANFERHDAELAELQARFEDN 781

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                 + LD  + +A            + R+  + A       R  + + +E+++ I  
Sbjct: 782 QLA--FESLDETLTNAR----------QEARELERAATDARFAARQSANRIDELKRSIQV 829

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                  E+   + + L +   ++  I  Q A
Sbjct: 830 AH-----EQAERVAASLEDARAELETINEQTA 856


>gi|172064574|ref|YP_001812224.1| hypothetical protein BamMC406_6550 [Burkholderia ambifaria MC40-6]
 gi|171998059|gb|ACB68975.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
          Length = 416

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 60/192 (31%), Gaps = 21/192 (10%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADI--RYDNN--ELQKLWSFLFSDFVEQK 530
             S+ P+L +  +   + N+   L E+  ++  +     N    L    + +     E  
Sbjct: 181 AKSENPNLSKRQVEQLIANYQDKLAEKANQVEMVTTDLANTVGRLDDAQAEIDRLAAELD 240

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR- 589
               E+  +R   +     L  + +QV       A  E  +  +        A   + + 
Sbjct: 241 RTRQEQARERESSQATSVELANVSKQVSTLQHELAKREHEVKQITHDLAHLKANPLKEQV 300

Query: 590 ----------LLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQE-- 635
                      L         ++ +  A  +    +   L + L +    +   E+ E  
Sbjct: 301 PVPTVPDEFTNLEDALATKLAEVKEARASLDSIQAEKEALEAELQQQKAALEAGEALEKK 360

Query: 636 --AMIEGFGKMS 645
             A+IE FG  +
Sbjct: 361 IRALIEKFGSFA 372


>gi|114550720|ref|XP_001152721.1| PREDICTED: similar to KIAA0562 protein isoform 1 [Pan troglodytes]
          Length = 867

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 35/132 (26%), Gaps = 5/132 (3%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
               + +         L   ++      P        +  +   L  L   +      + 
Sbjct: 153 DPADFSDESNTASREKLIDHYLGHNSEDPALEGTYARKSDYISPLDDLAFDMYQDPEVAQ 212

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILISILH 622
                    R+  Q+    Y +   L +   +++K   ++ +   +           +  
Sbjct: 213 IIRKLDERKREAVQKERYDYAKK--LKQAIADLQKVGERLGRYEVEKRCAVEKEDYDLAK 270

Query: 623 EVHIQIHQIESQ 634
           E   Q+ Q  ++
Sbjct: 271 EKKQQMEQYRAE 282


>gi|73949494|ref|XP_858929.1| PREDICTED: similar to transcription elongation regulator 1 isoform
           8 [Canis familiaris]
          Length = 1059

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 592 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 651

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 652 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 699

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 700 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 748

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 749 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 808

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 809 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 861


>gi|1050297|gb|AAA80458.1| product p150Glued [Neurospora crassa]
          Length = 1300

 Score = 41.8 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 75/227 (33%), Gaps = 25/227 (11%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +    RL+ + Q+   E     +  +++ R  +         +  L + +      LRE
Sbjct: 413 LREALIRLRDITQQQEEELKDQIKSMEEDLREFETIKEQHTTAKEKLAQTEAI-VEDLRE 471

Query: 485 AALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
                  +N+    +E  + L +   + + E+++L   +  D    K    E     +  
Sbjct: 472 Q------LNNALGAEEIIESLTEQTMNQSEEIKELR-AVIDDLESLKEINDELEINHVQN 524

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK--Q 601
               E+ +++D +                 +           +    L    E++     
Sbjct: 525 E--KEMQEEIDLKDSIIAEQFRQANLQRESLEDMEYTLSRFRELVTSLQSDLEDMRASHA 582

Query: 602 IAQVTAKGEAEKTAILI------------SILHEVHIQIHQIESQEA 636
           + +  ++    ++  ++            + +  + +++ ++E+QEA
Sbjct: 583 VTENESEQLNSRSRAMLDLNMKLQISASKAQVKTIDLELRRMEAQEA 629



 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 74/229 (32%), Gaps = 22/229 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + ++ +L+ L +K + +        K  A     +   Q L            +P  +E
Sbjct: 264 IEDLKAKLKVLEKKRMEDREKLNSLEKVKAERDKFERIIQTLQIKY--------QPQQQE 315

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              L   +          +EL        EL  L   +  +  E      + + Q+  E 
Sbjct: 316 IQDLKRQLKEAENRLYNVEELQAEHDTAMELATLDREMAEETAEVLKVELDALKQKNEEL 375

Query: 545 GFGELLKQLDRQVRDAGLWSATT--------EANIVDVRQGYQQALAL-YKRFRLLSRQK 595
                + + +      G+             E N   +R+   +   +  ++   L  Q 
Sbjct: 376 ELEVEVLREENSEFTNGMSPEERASTGWLQMERNNERLREALIRLRDITQQQEEELKDQI 435

Query: 596 EEIEKQIAQVTAKGEA-----EKTAILISILHEVHIQIHQIESQEAMIE 639
           + +E+ + +     E      EK A   +I+ ++  Q++     E +IE
Sbjct: 436 KSMEEDLREFETIKEQHTTAKEKLAQTEAIVEDLREQLNNALGAEEIIE 484


>gi|320166283|gb|EFW43182.1| TAO kinase 1 [Capsaspora owczarzaki ATCC 30864]
          Length = 835

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 33/367 (8%), Positives = 112/367 (30%), Gaps = 15/367 (4%)

Query: 277 VEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID 336
           V   +D  +  Q       ++       +    L             D   L        
Sbjct: 206 VVKLIDFGASTQLKPGVSKANTFVGTPYWMAPELITAMESGFYDAAVDIWSLGITCIEFA 265

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSF 395
            +       + ++ +      DP +    +    F + + +   P     W      +  
Sbjct: 266 QLKPPHFQMHAMSALFHIPQADPPTLEAPHWSGDFREFLAKCLQPDAAQRWSAHQLLQHS 325

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
              +        +   +   KD+  R      + + L  + +K  TE +  G+   +   
Sbjct: 326 FIKNNEKAATTVIAELVGRSKDKV-REIDLADLMENLADIDRKIETERTANGQESARLLT 384

Query: 456 HRDQKGPSQRLMQSS----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
            ++ +  + +  +          +  +   L     L        +++ Q +EL   +  
Sbjct: 385 EKETQKKALQEAKKQGATMQKARETLRPRHLLVRDTLEAPQQERQLVRSQMKELRLNK-- 442

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
             + +     +     +       +      E        +L+R  ++      + + + 
Sbjct: 443 EKQHKAEKVLIKQQSNDLDTLRKGQARDY--ETTVKSQEAELERMRKEQRDLVESLQKSF 500

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ---- 627
            + ++   + L   ++ +LL   K++++ ++  + ++ + E   +  +   E+  +    
Sbjct: 501 QNEKKKLSERLKDDEK-KLLKEHKDKLKAEMKVLESRQKDEAAGVDKNDKKELQKRQKDD 559

Query: 628 IHQIESQ 634
           + +++++
Sbjct: 560 LARMQTE 566


>gi|291303888|ref|YP_003515166.1| ATP-dependent chaperone ClpB [Stackebrandtia nassauensis DSM 44728]
 gi|290573108|gb|ADD46073.1| ATP-dependent chaperone ClpB [Stackebrandtia nassauensis DSM 44728]
          Length = 864

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 42/403 (10%), Positives = 122/403 (30%), Gaps = 18/403 (4%)

Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGY-MDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           N   A   ++   RK    +       +E Y +D+ +  + G  + V    T +      
Sbjct: 136 NLIEAFPAIRGGDRKITSSDPEGSFKALEKYGIDLTAAAKEGKVDPVIGRDTEIRRVIQV 195

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVLLSR--GEDPDSFIRC 365
           L  +     VL  +        A      ++   +P   R   V+          +  R 
Sbjct: 196 LSRRTKNNPVLIGEPGVGKTAIAEGLAQRIIAGDVPESLRDRKVVSLDLGAMVAGAQYRG 255

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             +   + ++ E       +     E  +     +              +   +LR   +
Sbjct: 256 QFEERLKSVLEEIKASDGQIITFLDELHTMVGAGKSEGSMDASNMLKPMLARGELRMVGA 315

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             + +     ++++I + +   R ++           +  +++    + ++     + + 
Sbjct: 316 TTLDE-----YRQHIEKDAALERRFQPVLVGEPSTTDTVGILRGLKERYEVHHGVRITDG 370

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
           AL+         + +++     I   +    +L   + S  VE            + E  
Sbjct: 371 ALVAAASLSDRYITDRFLPDKAIDLIDEAASRLRMEIDSRPVEVDEIERAVKRLEIEEMA 430

Query: 546 FGELLKQL-DRQVRDAGLWSATTEANIVDVRQGY----QQALALYKRFRLLSRQKEEIEK 600
             +   +    ++       A     +  + Q +    +   A+ +    L + + E E+
Sbjct: 431 LQKEADEASAERLERLRRELADKREELSAISQRWGVEKEHITAISQIKEELEQLRGEAER 490

Query: 601 QIAQVTAKGEAE----KTAILISILHEVHIQIHQIESQEAMIE 639
                     +E    +   L   L +   ++ ++++  +M++
Sbjct: 491 AERDSDLAKASELRYGRIPQLEQRLIQAESELAKLQNDGSMLK 533


>gi|170589189|ref|XP_001899356.1| Kinesin motor domain containing protein [Brugia malayi]
 gi|158593569|gb|EDP32164.1| Kinesin motor domain containing protein [Brugia malayi]
          Length = 965

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 99/328 (30%), Gaps = 27/328 (8%)

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
              V            + +S   D              +   ++      ++  E E+  
Sbjct: 450 ARNVQLLAEKNEGCTRMRISDSHD-QQVCIESTTNEVGEQEGDAFGNAVRVYIDELESLR 508

Query: 395 FNTPDE--RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452
               +     E      N    I        +   + +    +                 
Sbjct: 509 CALMESHATNEQLHQQMNRWKAIAANNTPKMHVDYLVNCAAVISNSSGNNAERVTASTPT 568

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL-------TLINHPAILQEQYQEL 505
            +  ++ K   +R+ QS +      +K +  EA +          +++   +  E  +++
Sbjct: 569 FSLIQEAKADIKRMKQSIIESSLEEEKINNDEAKINADDVMKSSVVMDDFEVDYEDDEDI 628

Query: 506 ADIRYDNNELQKLWSFLFSD-----FVEQKYFLPEEIHQRLCERGFGELLKQL------- 553
                   E  KL   L          E+     E+  +RL E+   EL  ++       
Sbjct: 629 EVENEAETECFKLRDNLADLQAEISIKERLVIELEQSERRLAEKKLAELSLRINEMEIER 688

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK--GEA 611
           DR + +     +    +   VR+  +         R   R+ + +E++  ++ AK   E 
Sbjct: 689 DRVLAEIAAKHSQKVVDAEQVRKIREDYERKLTAMRDEFRKLQSVEREHRRMQAKQVAEQ 748

Query: 612 EKTAILISILHEVHI---QIHQIESQEA 636
           ++   L + L+E+     Q+ Q   +EA
Sbjct: 749 QQLLRLRNELNELKKTKVQLMQRIKEEA 776


>gi|126459983|ref|YP_001056261.1| hypothetical protein Pcal_1374 [Pyrobaculum calidifontis JCM 11548]
 gi|126249704|gb|ABO08795.1| conserved hypothetical protein [Pyrobaculum calidifontis JCM 11548]
          Length = 406

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 51/151 (33%), Gaps = 10/151 (6%)

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-RLCERGFGELLKQL 553
           P   ++     A +     EL  L   L +   + +  L +   Q               
Sbjct: 142 PTTYEDLAARAAQLDAKVKELAALVDQLKAQIADLQRQLKQREAQVANLTALLAAARADA 201

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE--- 610
           ++         A  +A    + Q   Q  A+ +    +  Q  + ++Q+ ++ A  +   
Sbjct: 202 NQLSAALAQVRAERDALRAQLEQTQAQLNAVSQAKAAVEAQLADAKRQLDELKAAYDKLS 261

Query: 611 ------AEKTAILISILHEVHIQIHQIESQE 635
                   + A L + L ++  +  +++++E
Sbjct: 262 GQYTDAQRQIADLQARLADLQKRYEELQAEE 292


>gi|157107709|ref|XP_001649902.1| phd finger protein [Aedes aegypti]
 gi|108879514|gb|EAT43739.1| phd finger protein [Aedes aegypti]
          Length = 2274

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 88/276 (31%), Gaps = 20/276 (7%)

Query: 365  CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             + K   E+L  E+  ++    +++   ++       AE     K  +   +    +   
Sbjct: 1497 EWEKKEKERLAAEAEKMIKEAQQKKKAEKAAEEKRLAAEKAAEEKRLVEEKRLAAEKEAE 1556

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + I +  +   +K I E        +     R  +       +    + +L+++  L E
Sbjct: 1557 EKRIAEEKRLAEEKRIAEEKRLAEEKRLAEEKRLAEEKRLAEEKRLAEEKRLAEEKRLAE 1616

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                  L     + +E  + LA+        ++L         E++    + + +     
Sbjct: 1617 E---KRLAEEKRLAEE--KRLAEE-------KRLAEE-KRLAEEKRLAEEKRLAEEKRLA 1663

Query: 545  GFGELLKQ--LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                L ++  L  +     +  A             ++A         ++ +K    ++ 
Sbjct: 1664 EERRLAEEMRLAAEKAAEEMRLAAEREAEEKRLAAEKEAEEKRLAAEKIAEEKRLAAEKK 1723

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            A+      A K A  +        ++ +I +++A I
Sbjct: 1724 AEEKRLAAAAKKAAELQE-----AELRRIAAEKAAI 1754


>gi|210075140|ref|XP_499973.2| YALI0A18139p [Yarrowia lipolytica]
 gi|218551784|sp|P0C8L8|YL139_YARLI RecName: Full=Uncharacterized protein YALI0A18139g
 gi|199424896|emb|CAG83902.2| YALI0A18139p [Yarrowia lipolytica]
          Length = 782

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 20/302 (6%)

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410
                 + P +F R    +     +  +        +    + +               N
Sbjct: 300 ASFVNHKQPYNFARNNHGSDVSSAMDNARRQASETRRSNLSSYNDRNQPAAHSYLRTAPN 359

Query: 411 CINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
            +  I+ +  +    +    R+RL +  Q+   +     +   K           ++L +
Sbjct: 360 HMEKIRTEVDKEQTREKKLARERLARKQQRDKFDLLQTPQTKNKFNMQVPLDMSEEQLFE 419

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                     +   R   +   +      L E+  E+  ++    E Q     L     E
Sbjct: 420 VICKLTTQLDQSQARVREVEELVQQCSEQLNERSVEIDSLKSQYEEGQGEKEMLVGQLEE 479

Query: 529 QKYFLPEEIHQRLC------ERGFGEL-------LKQLDRQVRDAGLWSATTEANIVDVR 575
           Q   + EE    L       E+   ++       ++QL +QV+D  +    + A + DV+
Sbjct: 480 QLKRVSEEKDVELRQATERMEKELNDVTATKDHEIQQLKQQVQDLTIQ--LSSATVSDVK 537

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                      +         E+E ++ +     + E           +  ++     Q+
Sbjct: 538 TLRTDYEHYKSQCYRKDVMISELEARLQREENLEKFETELKD-KEKRLIKTELR--LGQQ 594

Query: 636 AM 637
           A+
Sbjct: 595 AL 596


>gi|326934511|ref|XP_003213332.1| PREDICTED: homer protein homolog 3-like isoform 1 [Meleagris
           gallopavo]
          Length = 353

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 75/214 (35%), Gaps = 16/214 (7%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             RL +   +  TE +        +         S    +  L + + +      E   L
Sbjct: 109 AARLAREKSQDKTELTNPALSITSHQVLPSPIISSNGPGEDKLFRSQSADVEISTEKERL 168

Query: 489 LTLINHPAILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
             +++  ++ + Q++      + +  +   KL + L         +  +    +      
Sbjct: 169 KKMLSEGSVSEVQWEA----EFFSLQDNNSKLVAALHEANANVDQWKKQLAAYQEETETL 224

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            + + +L+ Q        +++E N  ++ Q  ++   L K      +  +   ++ ++  
Sbjct: 225 RQRVAELESQGAH----DSSSENNKEELSQTLEELELLIKAKDEEIQMLKS--QKCSRWE 278

Query: 607 AKGEAEKTAILISILH----EVHIQIHQIESQEA 636
           A+GE E+T   +  L     E+  ++H  E   A
Sbjct: 279 AEGEREETLQKLQELEARNAELERRLHLAEQTLA 312


>gi|312143707|ref|YP_003995153.1| chromosome segregation protein SMC [Halanaerobium sp.
           'sapolanicus']
 gi|311904358|gb|ADQ14799.1| chromosome segregation protein SMC [Halanaerobium sp.
           'sapolanicus']
          Length = 1206

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 72/194 (37%), Gaps = 12/194 (6%)

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI-LQ 499
            +         +     ++     + +Q  + + +   K  + E   L    N+    +Q
Sbjct: 683 RKIEELTEKKAELKSRGEKLVAELKTLQKEIKEKETQNKEQIEELQALKMAENNKQNQIQ 742

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
              +EL++++   N L+  ++ L     E K  +  +    L  +     +     ++ +
Sbjct: 743 RFKEELSELKETKNSLEANYNQLEEKISENKKTIESK---ELQSQKLKANIAAEKEKIEE 799

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
                    A + ++R   ++   L      +S ++E   +++ +  +K      + L +
Sbjct: 800 LKEKITLKSAELEELRPELKE---LELDGARISEKRENAREKLEEKESK-----LSELEN 851

Query: 620 ILHEVHIQIHQIES 633
            L E+ +++  ++S
Sbjct: 852 ELKELVVKLDDLDS 865


>gi|291222504|ref|XP_002731256.1| PREDICTED: ninein-like [Saccoglossus kowalevskii]
          Length = 2251

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 8/141 (5%)

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLW 563
            AD+   N    KL   +       +  +   + Q     +     L  +++R+       
Sbjct: 1175 ADLNEANARNAKLVQEVDDRHANLEKNMEMRVRQTEKKYQDKLNSLHAEIEREREMISSQ 1234

Query: 564  SATTEANIVDVRQGYQQALALYKRFRLL-SRQKEEIEKQIAQV-TAKGEAEKT-AILISI 620
            +A  +  + D+    +   +L K    L  ++   +E+++ +     GE EKT   L+  
Sbjct: 1235 AARQKQALEDIIDQLRAEESLLKEKLALAQKENNRLEREVRESGERLGEYEKTNQRLMRD 1294

Query: 621  LHE---VHIQIHQIESQEAMI 638
            L +   +  ++ ++E+QE  I
Sbjct: 1295 LEDYNVLQKRLAELEAQEDRI 1315



 Score = 37.2 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 13/112 (11%), Positives = 39/112 (34%), Gaps = 3/112 (2%)

Query: 520  SFLFSDFVEQKYFLPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
              + S    ++    E+I  +L        E L    ++          +   + +  + 
Sbjct: 1228 REMISSQAARQKQALEDIIDQLRAEESLLKEKLALAQKENNRLEREVRESGERLGEYEKT 1287

Query: 578  YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             Q+ +   + + +L ++  E+E Q  ++  K + +     +    E +  + 
Sbjct: 1288 NQRLMRDLEDYNVLQKRLAELEAQEDRINEK-QVQFYEQNLKEYQEQNRGLR 1338


>gi|168213637|ref|ZP_02639262.1| replicative DNA helicase [Clostridium perfringens CPE str. F4969]
 gi|170714773|gb|EDT26955.1| replicative DNA helicase [Clostridium perfringens CPE str. F4969]
          Length = 433

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 61/164 (37%), Gaps = 6/164 (3%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A+L T+  +   + +   E+ +  + N + Q ++  +   + +   F    + ++L  
Sbjct: 12  EEAILGTVTANNKYMLKVIGEIEEKDFYNTKNQIIYRAISELYRKSIPFDLVVLSEKLSN 71

Query: 544 RGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL----YKRFRLLSRQKEE 597
                   L  +  +       +  +  NIV  +   ++ +            ++ + + 
Sbjct: 72  EIKSGAITLTDIAEKTSHVDYGTLLSHVNIVKEKSRERELVTACQMVISSEGNVNSKVDY 131

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           ++ ++ +V       K   +  +++    +I +  S +  I GF
Sbjct: 132 LQNKLLEVNQVSRKNKVMGIGDVMYTTLSEIEKAHSNKTGIRGF 175


>gi|156543020|ref|XP_001603821.1| PREDICTED: similar to viral A-type inclusion protein, putative
           [Nasonia vitripennis]
          Length = 1376

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 73/210 (34%), Gaps = 6/210 (2%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           R  +Q +            +  KK+ R  + +G   RL   +    + S   S+R   L 
Sbjct: 466 RKAIQMIQGFMKRHEQLEDKQAKKDRRIMELEGELSRLKNENAKTVRSSVHSSIR-RNLS 524

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLF---SDFVEQKYFLPEEIHQRLCERG 545
             L++ P       Q   ++    N+L+     +    +   +Q     EE+  RL ++ 
Sbjct: 525 TDLVDDPERDYNGQQRFEEMESKINDLRDQIDEIKAEKNLLEKQIQIESEELRDRLQDKD 584

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
                   ++      L   + E + +        A +  +    L + +EE+   I  +
Sbjct: 585 LKIECLVCEKNSIKDELQGKSEELDKLKEAYDRVSAKSDVQNPAELEKLREEL--AIKNL 642

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQE 635
             + ++++   L   L      + Q+ + E
Sbjct: 643 EIEEKSQQVERLTKELQVKTQNLQQLVNTE 672


>gi|194219751|ref|XP_001503942.2| PREDICTED: similar to transcription elongation regulator 1 isoform
           2 [Equus caballus]
          Length = 1067

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D DS      +   +     ++  ++   K+  +          +  E  L   + 
Sbjct: 600 DDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVF 659

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +       Y       L    +K + +     R  ++    +++   ++   +  + +
Sbjct: 660 DPR-------YL-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 707

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            K + + +  E A              +++ +  +     + + L++   +   +++   
Sbjct: 708 AKFNPRATFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKED 756

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQAL 582
            +   +++    F  L                  E++             D+ + Y + +
Sbjct: 757 SKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKI 816

Query: 583 ALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 817 AKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 869


>gi|126308751|ref|XP_001371653.1| PREDICTED: similar to myosin, heavy polypeptide 3, skeletal muscle,
            embryonic, [Monodelphis domestica]
          Length = 1939

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 87/271 (32%), Gaps = 17/271 (6%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       + +  +E       + ++ +       + +  
Sbjct: 1562 IQLEMTQVKSEIDRKIAEKDEEIEQLKRNYQRTVETMQSALDSEVRSRNEAIRIKKKMEG 1621

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       K     + Q   SQ  +  +L       +  L+E   L  
Sbjct: 1622 DLNEIEIQLSHANRQAAETLKHLRNVQGQLKDSQLHLDDAL-----RGQEDLKEQ--LAI 1674

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFS-----DFVEQKYFLPEEIHQRLCER 544
            +     +LQ + +EL          +KL    L         +  +        ++L E 
Sbjct: 1675 VERRANLLQVEVEELRAALEQTERARKLAEQELLDSNERVQLLHTQNTSLIHTKKKL-EA 1733

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               +L  +++   RDA       +  I D     ++          L R K+ +E+ +  
Sbjct: 1734 DVSQLQSEVEDASRDARNAEEKAKKAITDAAIMAEELKKEQDTSAHLERMKKNLEQTVKD 1793

Query: 605  VTAKGEAEKTAIL---ISILHEVHIQIHQIE 632
            +  + +  +   L      + ++  +I ++E
Sbjct: 1794 LQHRLDEAEQLALKGGKKQIQKLETRIRELE 1824


>gi|2546936|emb|CAA37308.1| muscle myosin heavy chain [Drosophila melanogaster]
          Length = 1175

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 811  DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 870

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    +    ++  + E           A+  E 
Sbjct: 871  NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 923

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 924  EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 983

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E+QI ++  + +  +   L
Sbjct: 984  NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1043

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 1044 KGGKKAIQKLEQRVRELENE 1063


>gi|74148166|dbj|BAE36246.1| unnamed protein product [Mus musculus]
          Length = 665

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|18376073|emb|CAD21101.1| DYNACTIN (150 KDA DYNEIN-ASSOCIATED POLYPEPTIDE) ro-3 [Neurospora
           crassa]
          Length = 1300

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 75/227 (33%), Gaps = 25/227 (11%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +    RL+ + Q+   E     +  +++ R  +         +  L + +      LRE
Sbjct: 413 LREALIRLRDITQQQEEELKDQIKSMEEDLREFETIKEQHTTAKEKLAQTEAI-VEDLRE 471

Query: 485 AALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
                  +N+    +E  + L +   + + E+++L   +  D    K    E     +  
Sbjct: 472 Q------LNNALGAEEIIESLTEQTMNQSEEIKELR-AVIDDLESLKEINDELEINHVQN 524

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK--Q 601
               E+ +++D +                 +           +    L    E++     
Sbjct: 525 E--KEMQEEIDLKDSIIAEQFRQANLQRESLEDMEYTLSRFRELVTSLQSDLEDMRASHA 582

Query: 602 IAQVTAKGEAEKTAILI------------SILHEVHIQIHQIESQEA 636
           + +  ++    ++  ++            + +  + +++ ++E+QEA
Sbjct: 583 VTENESEQLNSRSRAMLDLNMKLQISASKAQVKTIDLELRRMEAQEA 629



 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 74/229 (32%), Gaps = 22/229 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + ++ +L+ L +K + +        K  A     +   Q L            +P  +E
Sbjct: 264 IEDLKAKLKVLEKKRMEDREKLNSLEKVKAERDKFERIIQTLQIKY--------QPQQQE 315

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              L   +          +EL        EL  L   +  +  E      + + Q+  E 
Sbjct: 316 IQDLKRQLKEAENRLYNVEELQAEHDTAMELATLDREMAEETAEVLKVELDALKQKNEEL 375

Query: 545 GFGELLKQLDRQVRDAGLWSATT--------EANIVDVRQGYQQALAL-YKRFRLLSRQK 595
                + + +      G+             E N   +R+   +   +  ++   L  Q 
Sbjct: 376 ELEVEVLREENSEFTNGMSPEERASTGWLQMERNNERLREALIRLRDITQQQEEELKDQI 435

Query: 596 EEIEKQIAQVTAKGEA-----EKTAILISILHEVHIQIHQIESQEAMIE 639
           + +E+ + +     E      EK A   +I+ ++  Q++     E +IE
Sbjct: 436 KSMEEDLREFETIKEQHTTAKEKLAQTEAIVEDLREQLNNALGAEEIIE 484


>gi|332362664|gb|EGJ40462.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis SK49]
          Length = 641

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 15/148 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIEISETGSTLYLGDYDYYLEK 541

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L++   Q             +    ++  ++   L +R   L  Q E+++ QI+
Sbjct: 542 KAEQEALREETEQASPD---KPAPANDYQLQKENQKEQRRLARRLEQLEAQIEDLDSQIS 598

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI 631
           Q+       +     + L E   QI Q+
Sbjct: 599 QLQEAM---QATNNAAELMESQQQIDQL 623


>gi|313226000|emb|CBY21143.1| unnamed protein product [Oikopleura dioica]
          Length = 588

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/276 (9%), Positives = 80/276 (28%), Gaps = 7/276 (2%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            +       +  +   L  ++      +E         +   E + +      + Q    
Sbjct: 22  AQREMLKEADTTLNNILNKIENDVVDVSERDPDIRELRKFLSEQNRQTKEKLQESQGEVD 81

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
             ++  RD  +Q  +      +   R   +    R  + P +   ++         + +L
Sbjct: 82  QIAREKRDLEKQFKKYKEEAENQIARLRSQQNSLRKMESPKKVDKRTEQALRNEQVRMAL 141

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-RL 541
            E   +  +   P  + ++     +  + +    +L   L +              Q   
Sbjct: 142 EEK--MAEMWQ-PEEVLQRVATFVNSNFADTGNDELSEALENIRSRAAEKEALAAKQAHA 198

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSRQKEEIEK 600
                   +K+ D ++           AN ++  +   Q      ++   L +  +++  
Sbjct: 199 ESEARNARIKRPDHEMLRKIKDLEDQLANKLEKNKMVAQDSFRDRQKIEELEQLVKDLRN 258

Query: 601 QIAQVTAKGEAEKTAILIS--ILHEVHIQIHQIESQ 634
           ++ +  +K    + A L     L  +   +   + +
Sbjct: 259 RLQESNSKANEAEGAQLAQEKELKRLKANLKLSQKE 294


>gi|312380842|gb|EFR26731.1| hypothetical protein AND_06990 [Anopheles darlingi]
          Length = 1000

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 73/226 (32%), Gaps = 17/226 (7%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           L+    +  TE S + R  K    +        +   S  ++ +L +K      A    +
Sbjct: 513 LRTEKDRVATELSTHRRMCKCGFNNGTSSRERAKTPLSHSLQKQLDQKTREAIRAQEELM 572

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSD-----FVEQKYFLPEEIHQRLC---- 542
                  + + + +        +  KL   L         +EQ  +   E+  RL     
Sbjct: 573 QRCEDWKKREAEYVEHRVLITEQTTKLIEQLSELKGRNSILEQSMYAKSELLDRLQHNLR 632

Query: 543 --ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL----SRQKE 596
              R      +QL    R       + E    D     ++ +      R        Q +
Sbjct: 633 DVNRKLASKQEQLAEVERKQASAVDSLEKAQKDALMCEKRCMEELSNVRRCSMDQKNQLQ 692

Query: 597 EIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEAMIEG 640
           + E QI ++ A+ +   ++   + +   E+  ++H +  + A  EG
Sbjct: 693 QYETQIGRLRAEVDDLRQRCEQVTNERDELRTELHGLRERLATFEG 738


>gi|325109699|ref|YP_004270767.1| efflux transporter RND family, MFP subunit [Planctomyces
           brasiliensis DSM 5305]
 gi|324969967|gb|ADY60745.1| efflux transporter, RND family, MFP subunit [Planctomyces
           brasiliensis DSM 5305]
          Length = 439

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 43/133 (32%), Gaps = 24/133 (18%)

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQALA 583
               +      +  RL  R   E  + L   V ++   L       + ++  +  +Q   
Sbjct: 94  VEAGQDVQAGAVLGRLQARSLEETQQALQNAVEESRASLQRIGEGDSEMERIETRRQIDE 153

Query: 584 LYKRFRLL---------------SRQKEEIEKQIAQVT-------AKGEAEKTAILISIL 621
           L+ +   +                R+ +E+E +I  +             +K    ++ +
Sbjct: 154 LWMQLNTVRDSATFPESTETTANKRRFDELESRIRDLDGQSRAQMNASRDQKRNEALAQI 213

Query: 622 HEVHIQIHQIESQ 634
            +   Q+  IE+Q
Sbjct: 214 RDFEKQLRDIEAQ 226


>gi|296482252|gb|DAA24367.1| rho-associated protein kinase 2 [Bos taurus]
          Length = 1341

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 100/288 (34%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 822  MSEKQLKQENNHLLEMKMSLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 881

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 882  ELKEECEEKTKLCKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 941

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 942  EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 993

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L E    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 994  NKLKEA--QEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1051

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1052 NDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1096


>gi|296387082|ref|ZP_06876581.1| DNA primase [Pseudomonas aeruginosa PAb1]
          Length = 218

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 55/187 (29%), Gaps = 14/187 (7%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           +    +     +      +   +K   +          +            L TL++HP 
Sbjct: 34  EAQPRKSWNKDKKPWDGKKWDGKKKWDKGGRGDFKAPQRTPVSVESTTLNALRTLLHHPQ 93

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           +  +       +  + +   +L   L     +       ++  R      G LL+ L  +
Sbjct: 94  LALKVDDA-GTLAREQDTYAQLLVSLLEALQKNPRQSSMQLIARWHGTPQGRLLQALGEK 152

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                           ++ + +   +         S++  E E+++  V  K  +E T  
Sbjct: 153 EWLIVQ---------ENLEKQFFDTITKLSE----SQRFGEREERLRSVMQKSYSELTDE 199

Query: 617 LISILHE 623
             ++L E
Sbjct: 200 EKALLRE 206


>gi|289178755|gb|ADC86001.1| Excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 712

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/123 (8%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCE------RGFGELLKQLDRQVRDAGLWSA----TTE 568
              +   + E+ +  P+ + +++ +      +   +  + L+   R++G           
Sbjct: 585 RREIQMAYNEEHHIDPKPLIKKISDVNDMLAKEDVDTQELLEGGYRNSGKAGNSHLGLPN 644

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
               +  + +++ L      + L+    ++  Q+     + + E  A L   + ++  ++
Sbjct: 645 TTPEEADRRHEEILKAGLPAQDLADLIRQLSDQMHTAAEQLQFELAARLRDEIRDLKKEL 704

Query: 629 HQI 631
             +
Sbjct: 705 RAM 707


>gi|167581470|ref|ZP_02374344.1| chromosome segregation protein SMC [Burkholderia thailandensis
           TXDOH]
          Length = 1170

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 67/212 (31%), Gaps = 22/212 (10%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAAL 487
              ++ L ++   +            R        SQ L +      + +++    +  +
Sbjct: 663 AQEIENLTRQVRAQALLSDEAKSAAIRAEAAHTQASQALTEVRAQAERATQRVHALQMDV 722

Query: 488 LLTLINHPAILQ---EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           L     H    Q   +  +EL +I     E + L +       E+      E+  R  + 
Sbjct: 723 LKLTQAHERYTQRSTQIREELEEIGAQIEEQRALRAE-SEANFERHDAELAELQARFEDN 781

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                 + LD  + +A            + R+  + A       R  + + +E+++ I  
Sbjct: 782 QLA--FESLDETLTNAR----------QEARELERAATDARFAARQSANRIDELKRSIQV 829

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                  E+   + + L +   ++  I  Q A
Sbjct: 830 AH-----EQAERVAASLEDARAELETINEQTA 856


>gi|119571569|gb|EAW51184.1| hCG27198, isoform CRA_i [Homo sapiens]
          Length = 2057

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 93/335 (27%), Gaps = 17/335 (5%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 1464 RRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 1523

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1524 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1583

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E  L   
Sbjct: 1584 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELEGKLATL 1642

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1643 SDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKNQLEESEFT- 1701

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1702 ----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1757

Query: 609  GEA---------EKTAILISILHEVHIQIHQIESQ 634
                         + +  ++ ++++  Q+ +   +
Sbjct: 1758 MNELMKKHKAAVAQASRDLAQINDLQAQLEEANKE 1792



 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 98/311 (31%), Gaps = 46/311 (14%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R        +   + L  +++  + E E++     ++       L+  +  + DQ  R  
Sbjct: 1596 RDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREK-----RELEGKLATLSDQVNRRD 1650

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +      RL++  ++     +               K    +L ++ L + + +   +++
Sbjct: 1651 FESE--KRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQL-KNQLEESEFTCAAAVK 1707

Query: 484  EAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY----------- 531
                +   I    + + +  +    +    + LQ+  + + +   E +            
Sbjct: 1708 ARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKA 1767

Query: 532  ---------FLPEEIHQRLCER-----GFGELLKQLDRQVRDAGLWSATT------EANI 571
                         ++  +L E         E L+ L  QV                EA I
Sbjct: 1768 AVAQASRDLAQINDLQAQLEEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKI 1827

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVH 625
             ++    +      KR   L+ + +E  +++ +           E E+   L   L +  
Sbjct: 1828 RELETRLEFERTQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTK 1887

Query: 626  IQIHQIESQEA 636
             ++ ++  +EA
Sbjct: 1888 EEMGELARKEA 1898


>gi|40849918|gb|AAR95671.1| plectin 6 [Mus musculus]
          Length = 4686

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2386 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2445

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2446 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2505

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2506 RTLEAERQRQLEMSAEAERLKLRMVEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2565

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2566 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2620

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2621 QEQILQETQALQKSFLSEKDSLLQRERFIE 2650



 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1853 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1912

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1913 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1972

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1973 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 2024

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 2025 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 2084

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 2085 ELELGRIRSNAEDTMRSKEQAELEAARQR 2113



 Score = 40.6 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2346 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2405

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2406 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2465

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2466 KAEAELLQQQKELAQEQA 2483



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1797 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1856

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1857 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1915



 Score = 37.6 bits (85), Expect = 6.5,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1347 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1406

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1407 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1463

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1464 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1520

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1521 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1580

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1581 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1613


>gi|118373833|ref|XP_001020109.1| hypothetical protein TTHERM_00660460 [Tetrahymena thermophila]
 gi|89301876|gb|EAR99864.1| hypothetical protein TTHERM_00660460 [Tetrahymena thermophila
           SB210]
          Length = 1744

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 71/219 (32%), Gaps = 34/219 (15%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            RL  L      E     +  K N   ++         + S+ K +       RE  L+ 
Sbjct: 553 QRLNNLLSAKEKEKELIEKEVKINKDEKEMHKRESERQKISIEKLENQISVLERERNLI- 611

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                          + +    + +L++    +     +      +    +L      +L
Sbjct: 612 ---------------IDEKDILHQKLEQALEKISQLTNKTIQNQQQMTDYQLIMSENSQL 656

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            ++L++          + E                 KR   + ++  E EK+ AQ   + 
Sbjct: 657 RQELNQFKNHYQEMVDSHE-----------------KRENEMLQRIRESEKEKAQKENES 699

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           + EK   L   + ++  QIH IE Q  ++E   + S R+
Sbjct: 700 DKEKL-RLNEKIKDLQNQIHDIEEQNRILEENVEHSKRI 737


>gi|47208995|emb|CAF91401.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2819

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 73/226 (32%), Gaps = 25/226 (11%)

Query: 407  HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
              K   + I+  +      + +  RLQ+  +     ++      K   R +++       
Sbjct: 1437 RTKYETDAIQRTEELEEAKKKLAQRLQEAEEAVEAVNAKCSSLEKTKHRLQNEIEDLMVD 1496

Query: 467  MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
            ++ S        K       +L          Q+  +  +++     E + L + LF   
Sbjct: 1497 VERSNAAAAALDKKQRNFDKILA------EWKQKYEESQSELEGSQKEARSLSTELFKL- 1549

Query: 527  VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                            +  F E L+ L+   R+              + +G +    L K
Sbjct: 1550 ----------------KNSFEESLENLETMKRENKNLQEELSDLAEQIVEGTKSIHELEK 1593

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQ 630
              + L ++K E++  + +  A  E E+     +    +++  +I +
Sbjct: 1594 IRKQLEQEKSELQTSLEEAEASLEHEEGKILRIQLEFNQIKAEIER 1639



 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 28/266 (10%), Positives = 91/266 (34%), Gaps = 16/266 (6%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + + +  ++ ++        S+    RL++  +  + E 
Sbjct: 1631 NQIKAEIERKLGEKDEEMEQAKRNQQRIVDSLQSSLEAETRSRNEALRLKKKMEGDLNEM 1690

Query: 444  SGYGRYWKKNARHRDQKGPSQRLM-QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                    + A    ++  S     + S ++   S + +      +  +     +LQ + 
Sbjct: 1691 EIQLSQANRQAAEAQKQLKSVHAHLKDSQLQLDESLRANDDMKENIAIVERRNNLLQAEV 1750

Query: 503  QELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEE--IHQRLC--ERGFGELLKQLDRQV 557
            +EL          +KL    L       +    +   +       E    +L  +++  V
Sbjct: 1751 EELRASLEQTERSRKLAEQELLDVSERVQLLHSQNTSLLNHKKKLEADASQLQTEVEEAV 1810

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1811 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAM 1870

Query: 608  KGEAEKTAILISILHEVHIQIHQIES 633
            KG  ++   L + + E+  ++   + 
Sbjct: 1871 KGGKKQVQKLEARIKELESELEAEQR 1896


>gi|15611319|ref|NP_222970.1| heat shock protein [Helicobacter pylori J99]
 gi|11386720|sp|Q9ZMH1|CLPB_HELPJ RecName: Full=Chaperone protein ClpB
 gi|4154766|gb|AAD05825.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
          Length = 856

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 92/280 (32%), Gaps = 26/280 (9%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R   K   + L+ + +  +D+              +   ++   +K   N I        
Sbjct: 220 RIVNKEVPKTLLNKRVVALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVI-------L 272

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +              + +  +    K          
Sbjct: 273 FIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYFEKD------MAL 326

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLW---SFLFSDFVEQKYFLPEEIHQR 540
           +      L+N P+ + E  Q L  ++        +    S L +       ++ +     
Sbjct: 327 QRRFQPILLNEPS-INEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPD 385

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL------YKRFRLLSRQ 594
                  E   QL  Q+       ++ + +I  + +  +QAL +      +KR + + ++
Sbjct: 386 KAIDLIDEGAAQLKMQMESEPAKLSSVKRSIQRL-EMEKQALEMENKESNHKRMQEILKE 444

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             +++++  Q+ A+ E EK   +   +  + +++  ++ +
Sbjct: 445 LSDLKEEKIQLEAQFENEK--EVFKEISRLKMEMEGLKKE 482


>gi|71032907|ref|XP_766095.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68353052|gb|EAN33812.1| hypothetical protein, conserved [Theileria parva]
          Length = 1947

 Score = 41.8 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 78/277 (28%), Gaps = 18/277 (6%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              I+   + A  K   ES  L  +  + E +        E        +     I + ++
Sbjct: 1205 EKIKLQSELATLKSQKESEELSRIRLESELDTLKAQKESEEQARIRLQEEQNRIISENQM 1264

Query: 421  R-YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                  +     L++   +   +        + + R R          Q  + K     K
Sbjct: 1265 ALEEQKREFDAELERQNSELQKQLEQIRIDLEHSDRERRLLEKELS-DQLQIQKENDPDK 1323

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS---DFVEQKYFLPEE 536
                E A L            + + +     ++ E   L   +     +  EQ     ++
Sbjct: 1324 ILELERARLR------DEWNREQETIKRKWEESQEH--LRKEMIRMQKELEEQDRIKAQK 1375

Query: 537  IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK- 595
                L +    E L  L  +     L     E+ +  ++   +       R +    +  
Sbjct: 1376 ESDELEKIKLQEQLDTLKSKKESEELARIRLESELDTLKAQKESEEQARIRLQEEQNRII 1435

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             E +  + +   + +AE          E+  Q+ QI 
Sbjct: 1436 SENQMALEEQKREFDAELERQNS----ELQKQLEQIR 1468



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 78/277 (28%), Gaps = 18/277 (6%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              I+   + A  K   ES  L  +  + E +        E        +     I + ++
Sbjct: 1029 EKIKLQSELATLKSQKESEELSRIRLESELDTLKAQKESEEQARIRLQEEQNRIISENQM 1088

Query: 421  R-YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                  +     L++   +   +        + + R R          Q  + K     K
Sbjct: 1089 ALEEQKREFDAELERQNSELQKQLEQIRIDLEHSDRERRLLEKELS-DQLQIQKENDPDK 1147

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS---DFVEQKYFLPEE 536
                E A L            + + +     ++ E   L   +     +  EQ     ++
Sbjct: 1148 ILELERARLR------DEWNREQETIKRKWEESQEH--LRKEMIRMQKELEEQDRIKAQK 1199

Query: 537  IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK- 595
              + L +      L  L  Q     L     E+ +  ++   +       R +    +  
Sbjct: 1200 ESEELEKIKLQSELATLKSQKESEELSRIRLESELDTLKAQKESEEQARIRLQEEQNRII 1259

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             E +  + +   + +AE          E+  Q+ QI 
Sbjct: 1260 SENQMALEEQKREFDAELERQNS----ELQKQLEQIR 1292


>gi|328856614|gb|EGG05734.1| Hypothetical protein MELLADRAFT_116672 [Melampsora larici-populina
           98AG31]
          Length = 984

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 81/242 (33%), Gaps = 15/242 (6%)

Query: 418 QKLRYYYSQAIRDRLQ----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           + L+  +   +++       +L   +I +  G+ +  +           ++     + + 
Sbjct: 639 EALKAEHMSKLKEEFNRAREELDSGHIEQLRGFRQSSQDTTEQLLSSHAAELEATKAALT 698

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
              + +    E+ L+   +   AI  +     +        + +L   L       K+  
Sbjct: 699 SDFASERVKIESELMQVKLELNAIQSDLNATRSTNTDQLTTIDQLTGELEKTRATLKHVE 758

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            E   Q    +    L + L     +     +  +A   D+   ++     +     + +
Sbjct: 759 SEAKAQTSDSQEISSLREALQNAREEGEQTRSVFQATTEDLTTKFEHFRERH--EAEVKQ 816

Query: 594 QKEE---IEKQIAQVTAKGEAEKTAILISILH------EVHIQIHQIESQEAMIEGFGKM 644
             EE   ++K++A +    + E T I +          E+  +I + ++ EA ++     
Sbjct: 817 HIEEKTKLQKELAAMEEASQGEATRIEMQQSMINEFTEEIQREISKRQAVEAEVKQLRAS 876

Query: 645 SG 646
           +G
Sbjct: 877 NG 878



 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 95/295 (32%), Gaps = 37/295 (12%)

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              D  S +      A +     +    + L +   +  + +       LE         
Sbjct: 451 GNHDVASRLEAAETRAKQVEEEAAAKYANDLAQELAKASNESGASHTQALEELESTHSAR 510

Query: 415 IKD---------QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
           ++          ++LR      +    ++L        +      +K+    ++     R
Sbjct: 511 VQSLTGEHESALKELRESLESELASTREKLQAWESDRDAIVKELEEKHTVALEKATEETR 570

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                  + KLS      E A+L               EL+++R  ++ LQ     L + 
Sbjct: 571 STAEEAHQVKLSALREELEQAILAL-----------KNELSEVRNAHSALQTERDELQAA 619

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQ-VRDAGLWSATTEANIVDVRQGYQQALAL 584
                        ++       +LL+Q++                   ++  G+ + L  
Sbjct: 620 LAS---------LRQEKTEQEKDLLEQMEALKAEHMSKLKEEFNRAREELDSGHIEQLRG 670

Query: 585 YKR------FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +++       +LLS    E+E   A +T+   +E+   + S L +V ++++ I+S
Sbjct: 671 FRQSSQDTTEQLLSSHAAELEATKAALTSDFASERV-KIESELMQVKLELNAIQS 724


>gi|324500130|gb|ADY40071.1| Intermediate filament protein A [Ascaris suum]
          Length = 1245

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 21/159 (13%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFL-------------FSDFVEQKYFLPEEIHQRLC 542
            +       +  +R+   + +KL + L                  E +     ++     
Sbjct: 742 DLNDRLASYIEKVRFLEAQNRKLAADLDLLRGRWGKDTLSVRAMYEGELQEARKLVNDTN 801

Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                 E+   +LL +L    R         + +   + +   Q   L     LL R+  
Sbjct: 802 RQREELEKEIRKLLDELSEYRRKYEDALRGHQIDRDRIDELLNQLSGLEAEINLLRRRIA 861

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQ-IHQIESQ 634
            IE++IA++  K   +    L     ++  + +++I+ Q
Sbjct: 862 NIEEEIARI-KKENLQFANELTKARSDLDQETLNRIDFQ 899


>gi|311268651|ref|XP_001925616.2| PREDICTED: Golgin subfamily A member 4 [Sus scrofa]
          Length = 2283

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 76/222 (34%), Gaps = 8/222 (3%)

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R  +   I +   Q  +    +    G+           +  ++  +  S V G +  +
Sbjct: 1920 EREEHRVEIEELTSQFEKLQALQQQMDGKNKPTEVLEESSEEKAKSHVVQSGVLGNVKTE 1979

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             +  E  L         + QE  +   D+R    E Q+    +  ++ ++     ++  +
Sbjct: 1980 HNDLEFKLAGAEQEKQKLSQEVVKLQKDLRMLRKEHQQELDIIKKEYEQEMEEKIKQEQE 2039

Query: 540  RLC---ERGFGELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALALYKRF-RLLSRQ 594
             L         +L+++   Q+         T +  I   ++   + L  ++     L ++
Sbjct: 2040 DLELKHNSTLKQLMREFHTQLAQKEQELEMTIKETIDKAQEVEAELLESHQEETNQLYKR 2099

Query: 595  KEEIEKQIAQVTAKGEA---EKTAILISILHEVHIQIHQIES 633
              E E  + +   + E     +   + + + ++  Q+ +++ 
Sbjct: 2100 IAEKEDDLKRTAKRYEEILDAREEEMTAKVLDLQAQLEELQK 2141


>gi|187466199|emb|CAQ52076.1| benzodiazapine receptor associated protein 1 [Mus musculus]
          Length = 1786

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 81/235 (34%), Gaps = 13/235 (5%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           ++    Y       +    +  +      G   ++    +++    ++       +    
Sbjct: 102 EEEAQAYKAKFN--IGFGDRPNLELLRALGELQQRCTILKEENQMLRKSSFPETEEKVRR 159

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            K    E A++         L+E+ Q+L +        Q L    F   + +       +
Sbjct: 160 LKRKNAELAVIA------KRLEERAQKLQETNMRVEGPQWLHMRDFDRLLRESQREVLRL 213

Query: 538 HQRLCERGFGELLK--QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +++  R   E L+  +       + + +    A    V Q   ++  +  R     ++ 
Sbjct: 214 QRQIALRNQREPLRPARSPGPTAPSRVGAPAPGAPGEAVLQDDVESPQVVLREPEKQQRV 273

Query: 596 EEIEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA-MIEGFGKMSGR 647
           +++E ++   +   +   ++         E+ +Q+   +++ A ++E   ++SGR
Sbjct: 274 QQLESELCKKRKKCESLEQEARKKQRRCEELELQLRAAQNENARLVEENSRLSGR 328


>gi|122065897|sp|Q9QXS1|PLEC_MOUSE RecName: Full=Plectin; Short=PCN; Short=PLTN; AltName:
            Full=Plectin-1; AltName: Full=Plectin-6
          Length = 4691

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2391 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2450

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2451 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2510

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2511 RTLEAERQRQLEMSAEAERLKLRMVEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2570

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2571 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2625

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2626 QEQILQETQALQKSFLSEKDSLLQRERFIE 2655



 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1858 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1917

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1918 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1977

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1978 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 2029

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 2030 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 2089

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 2090 ELELGRIRSNAEDTMRSKEQAELEAARQR 2118



 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2351 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2410

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2411 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2470

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2471 KAEAELLQQQKELAQEQA 2488



 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1802 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1861

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1862 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1920



 Score = 37.6 bits (85), Expect = 6.4,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1352 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1411

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1412 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1468

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1469 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1525

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1526 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1585

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1586 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1618


>gi|148678083|gb|EDL10030.1| mCG127945, isoform CRA_b [Mus musculus]
          Length = 1080

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 31/347 (8%), Positives = 104/347 (29%), Gaps = 42/347 (12%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++ L   +P ++              +   +   +     +         +D DS   
Sbjct: 564 EDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPIKAKKRKRDDNKDIDSEKE 623

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              +   +     ++  ++   K+  +          +  E  L   +   +       Y
Sbjct: 624 AAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPR-------Y 676

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                  L    +K + +     R  ++    +++   ++   +  + + K + + +  E
Sbjct: 677 L-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSE 731

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            A              +++ +  +     + + L++   +   +++    +   +++   
Sbjct: 732 FAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKEDSKTRGEKIKSD 780

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQALALYK---RFRL 590
            F  L                  E++             D+ + Y + +A      + + 
Sbjct: 781 FFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKE 840

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 841 LERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 882


>gi|145479367|ref|XP_001425706.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392778|emb|CAK58308.1| unnamed protein product [Paramecium tetraurelia]
          Length = 555

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 77/236 (32%), Gaps = 31/236 (13%)

Query: 416 KDQKLRYYYSQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            D+  R  YS+ +     +   FQ+     +   R  ++  +   ++   + L +S    
Sbjct: 208 SDEDGRITYSELLEALTFVPDFFQQERQIANELRRSRERIIQIEREREVLEDLKKSRERV 267

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             L +     E       +      +E+ ++L ++R     L+ L               
Sbjct: 268 EDLRRSRERLEQ------MQDLKRSRERIEQLDELRRSRERLEDLRKS------------ 309

Query: 534 PEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                +RL + +   E L QL+   R         E      RQ     L   +      
Sbjct: 310 ----RERLEDLKKSRERLNQLEELKRSRQRMEELEELKKSRERQAQIDELRKSR------ 359

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            + E++ K   ++    +  K    I  L +   +I ++++Q   IE       RL
Sbjct: 360 ERLEDLRKSRERLEQLEQERKNQEKIEELRKSRSRIEELQNQRKKIEELRTSQERL 415


>gi|118085086|ref|XP_417152.2| PREDICTED: similar to centromere protein J [Gallus gallus]
          Length = 1227

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/144 (10%), Positives = 55/144 (38%), Gaps = 8/144 (5%)

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDA 560
           ++L ++  +    +   + + +   E++      I + + +  +   + L +++   R  
Sbjct: 803 EKLIELEMEIERFRA-ENTILTKLREEREHALASIRKEIADFQQQKAQELAEIEEY-RKK 860

Query: 561 GLWSATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
            +     E  + +      +A+         + L +Q  E+++ + +  AK        L
Sbjct: 861 EMKKLQKERKVFEKYTIEARAIPDKKERDEIQALKQQIAELQEDLKRKEAKWST-THRRL 919

Query: 618 ISILHEVHIQIHQIESQEAMIEGF 641
              +  +  +  +++ +  ++E F
Sbjct: 920 KDQIDALVNENMELKEEVKIMERF 943


>gi|56800287|emb|CAI35956.1| benzodiazapine receptor associated protein 1 [Mus musculus]
          Length = 1786

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 81/235 (34%), Gaps = 13/235 (5%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           ++    Y       +    +  +      G   ++    +++    ++       +    
Sbjct: 102 EEEAQAYKAKFN--IGFGDRPNLELLRALGELQQRCTILKEENQMLRKSSFPETEEKVRR 159

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            K    E A++         L+E+ Q+L +        Q L    F   + +       +
Sbjct: 160 LKRKNAELAVIA------KRLEERAQKLQETNMRVEGPQWLHMRDFDRLLRESQREVLRL 213

Query: 538 HQRLCERGFGELLK--QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +++  R   E L+  +       + + +    A    V Q   ++  +  R     ++ 
Sbjct: 214 QRQIALRNQREPLRPARSPGPTAPSRVGAPAPGAPGEAVLQDDVESPQVVLREPEKQQRV 273

Query: 596 EEIEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA-MIEGFGKMSGR 647
           +++E ++   +   +   ++         E+ +Q+   +++ A ++E   ++SGR
Sbjct: 274 QQLESELCKKRKKCESLEQEARKKQRRCEELELQLRAAQNENARLVEENSRLSGR 328


>gi|78070727|gb|AAI07777.1| EIF3A protein [Homo sapiens]
          Length = 640

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    E+I  +L       +L +    ++ A +     E + + V    + +   ++R  
Sbjct: 512 QSMPSEQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRIL 569

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +  EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 570 ARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|74140527|dbj|BAE42402.1| unnamed protein product [Mus musculus]
          Length = 1700

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 37/349 (10%), Positives = 90/349 (25%), Gaps = 31/349 (8%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   +  +  D   F +      
Sbjct: 1122 RRFDSELSQAHEETQREKLQREKLQREKDMLLAEAFSLKQQMEEKDLDIAGFTQKVVSLE 1181

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1182 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGSIQMLEQAKLRLEMEME 1241

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K  ++    E+ L   
Sbjct: 1242 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKALREKRELESKLSTL 1300

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1301 SDQVNQRDFESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQLKNQLEESEFT- 1359

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1360 ----CAAAVKARKAMEVEMEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1415

Query: 609  GE-----------------------AEKTAILISILHEVHIQIHQIESQ 634
                                       +         E+  ++  ++SQ
Sbjct: 1416 MNELMKKHKAAVAQASRDMAQMNDLQAQIEESNKEKQELQEKLQALQSQ 1464



 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1440 LQAQIEESNKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFEK 1496

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1497 TQVKRLENLASRLKETMEKLTEERDQRAAAENREKEQNKRLQRQLRDTKEEMSELARKEA 1556



 Score = 37.2 bits (84), Expect = 8.1,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 93/304 (30%), Gaps = 34/304 (11%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             +      ++  VD   KR  +        E+       +   +   D        Q ++
Sbjct: 1031 EWRLKYERAVREVDFTKKRLQQELEDKMEVEQQSRRQLERRLGDLQADSDESQRALQQLK 1090

Query: 430  DRLQQLFQK----------YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             + Q+L  +              +    +  ++      Q     +  +    K +  K 
Sbjct: 1091 KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEETQREKLQREKLQREKD 1150

Query: 480  PSLREAALLLTLINHPAI-----------LQEQYQELADIRYDNNE-LQKLWSFLFSDFV 527
              L EA  L   +    +           L+ + Q+++     +   L K+   L     
Sbjct: 1151 MLLAEAFSLKQQMEEKDLDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEA 1210

Query: 528  ----EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ------- 576
                +++    +    ++ E+    L  +++R  +       + +  + + RQ       
Sbjct: 1211 KVKDQEEELDEQAGSIQMLEQAKLRLEMEMERMRQTHSKEMESRDEEVEEARQSCQKKLK 1270

Query: 577  -GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                Q    Y+  +   R+K E+E +++ ++ +           +  ++      +   +
Sbjct: 1271 QMEVQLEEEYEDKQKALREKRELESKLSTLSDQVNQRDFESEKRLRKDLKRTKALLADAQ 1330

Query: 636  AMIE 639
             M++
Sbjct: 1331 IMLD 1334


>gi|311261483|ref|XP_003128742.1| PREDICTED: LOW QUALITY PROTEIN: Golgin subfamily A member 5-like
           [Sus scrofa]
          Length = 730

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 93/253 (36%), Gaps = 8/253 (3%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            E +       +   +++      +N ++ ++L    +  + +R     +K + E     
Sbjct: 354 HEADASLKREQESYKQMQSEFAARLNKMEVERLNLAEAVTLAERKYSDEKKRVDELQQQV 413

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
           +  K N     Q+    +   + +++ K     SL+E +    L +  A   E  +   +
Sbjct: 414 KTLKSNVESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSSTANSMELEELRHE 473

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
                 E+QKL   +     E +    +++ +        E L+ L  Q+          
Sbjct: 474 KEMQREEIQKLMGQIHQLRSELQDMEAQQVSEA---ESARERLQDLQDQIAGQKASKQEL 530

Query: 568 EANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           EA +   +Q +      LY+    L  + ++ E +I ++  +   +  +       E+  
Sbjct: 531 EAELERQKQEFHYMEEDLYRTKNTLQSRIKDREDEIQKLRNQLTNKTLSNSSQ--SELEN 588

Query: 627 QIHQIESQEAMIE 639
           ++HQ+   E +I+
Sbjct: 589 RLHQL--TETLIQ 599


>gi|307191147|gb|EFN74845.1| WD repeat-containing protein 65 [Camponotus floridanus]
          Length = 1220

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 34/356 (9%), Positives = 101/356 (28%), Gaps = 40/356 (11%)

Query: 287  CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
                +++V      A+ E + ++       I    + +   ++      +  +  +    
Sbjct: 713  HNDKLRDVHQGYCEAIKELRDKIEKLQEDHINEINNINVEIVKMKNAH-EEAMQQMENNY 771

Query: 347  RVNFVLLSRGEDPDSFIRCYGKTAFEKLIV----------ESLPLVDMLWKRETENRSFN 396
             +  +                +  +EK +           +           E + +   
Sbjct: 772  EIRLITEYDKYQAFEECTNIMRENYEKRLKDLEKRDAEELQRTVTKYEALLHEKKVQLEE 831

Query: 397  TPDERAELEIHLKNCINHIKDQKLRY--YYSQAIRDRLQQLFQ-KYITEHSGYGRYWKKN 453
            T DE    +   ++ ++ I+D   R          + L +  Q     +        K  
Sbjct: 832  TSDEMTHKQHVHEHLMSQIEDDADREILEVRTKFENLLYEERQINLKLKGEAGMMRNKFM 891

Query: 454  ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
            A  RD     +++ +      +  K     E  +         + +E  +   D    + 
Sbjct: 892  ASQRDVDDLKRQVHRVQGEFAQFHKNIQDLEKQIA-------ELRKEISER--DATIQDK 942

Query: 514  ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            E       ++      +     +             ++  DR++++             +
Sbjct: 943  E-----QQIYDMKQTNQELEKFKFVLNYKIEELKNQIEPRDREIQELK----------EN 987

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +R+   +  +L+K    L +Q  E+ +++     + + E          ++  +I 
Sbjct: 988  IREMETELASLHKTNMNLEQQLHEVREKLHATRQELDREMHRN--KRCRQLLRKIR 1041



 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 30/303 (9%), Positives = 92/303 (30%), Gaps = 50/303 (16%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK--LRYYYSQAIRD------RLQQ 434
           +     +         D+  ++       I  ++D+   L+  +   I +      +++ 
Sbjct: 699 ETEHAYKLRQIDVQHNDKLRDVHQGYCEAIKELRDKIEKLQEDHINEINNINVEIVKMKN 758

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
             ++ + +              + Q       +     + +L          L  T+  +
Sbjct: 759 AHEEAMQQMENNYEIRLITEYDKYQAFEECTNIMRENYEKRLKDLEKRDAEELQRTVTKY 818

Query: 495 PAILQEQYQELAD--IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE--LL 550
            A+L E+  +L +      + +   +   L S   +       E+  +     + E  + 
Sbjct: 819 EALLHEKKVQLEETSDEMTHKQH--VHEHLMSQIEDDADREILEVRTKFENLLYEERQIN 876

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----ALYKRFRLLSRQKEEIEKQIAQVT 606
            +L  +          ++ ++ D+++   +        +K  + L +Q  E+ K+I++  
Sbjct: 877 LKLKGEAGMMRNKFMASQRDVDDLKRQVHRVQGEFAQFHKNIQDLEKQIAELRKEISE-R 935

Query: 607 AKGEAEKTAILI-------------------------------SILHEVHIQIHQIESQE 635
                +K   +                                  + E+   I ++E++ 
Sbjct: 936 DATIQDKEQQIYDMKQTNQELEKFKFVLNYKIEELKNQIEPRDREIQELKENIREMETEL 995

Query: 636 AMI 638
           A +
Sbjct: 996 ASL 998


>gi|302783555|ref|XP_002973550.1| hypothetical protein SELMODRAFT_442163 [Selaginella moellendorffii]
 gi|300158588|gb|EFJ25210.1| hypothetical protein SELMODRAFT_442163 [Selaginella moellendorffii]
          Length = 758

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 7/141 (4%)

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE--LLKQLDRQVRDA 560
            +L +I   +    +L   L             +    L          L         +
Sbjct: 141 DQLHEIERLDRRASELQRSLQQLRHRLPPANIAQGLPHLHAESLASQSALALELHAHSAS 200

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--KTAILI 618
            + +   +     +R+ Y       +  R      EE+E+++ + +   E E  +   L 
Sbjct: 201 RIQAQELDQLEQKLREEYDCLEKELRAQRD---SIEELEEKVQEASPLEEEEASELQSLR 257

Query: 619 SILHEVHIQIHQIESQEAMIE 639
           + L +   +  +   + +M+E
Sbjct: 258 AELAKWQTKAAESRKELSMVE 278


>gi|296108123|ref|YP_003619824.1| LepB [Legionella pneumophila 2300/99 Alcoy]
 gi|295650025|gb|ADG25872.1| LepB [Legionella pneumophila 2300/99 Alcoy]
          Length = 1294

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 100/272 (36%), Gaps = 37/272 (13%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRS---FNTPDERAELEIHLKNCINHIKDQKLR-Y 422
             +    + I +   L +   +   +          + + +L   + +    +++++L+  
Sbjct: 871  HQEETIERITKEKSLANSALESLRKEMHELTRKNEENQLKLIKQVHSLSEQLEEKQLQIR 930

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
             + + ++++ +++ Q    + S          +  + K   Q+L +    K K S   S 
Sbjct: 931  EFEKQLQEKEKRVEQSEKEKASEKRTVVSLREQVSNLKLQLQQLGEVIQEKEKGSSLISQ 990

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            +   ++        I+++Q ++L +++    ++Q+L S       + +    E +H +  
Sbjct: 991  QSKQIIAL----QEIIEDQKRQLEELKI---KIQELASANQELGKQNQSLSKENLHNKNT 1043

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                 + L +L  Q+      S+  E  I  +R+                         I
Sbjct: 1044 VEDLKKKLNELSVQLEQLHQSSSEKEQTIRKLREEL-----------------------I 1080

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             + ++  + E+  ++   L E   +I +++ +
Sbjct: 1081 KKDSSLKQNEEMQLVQKHLQE---EIDRLQKE 1109



 Score = 38.3 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 80/236 (33%), Gaps = 28/236 (11%)

Query: 425  SQAIRDRLQQ---LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL--VKGKLSKK 479
             +++ +++Q+   L +    E               ++    + L  S+L  ++ ++ + 
Sbjct: 841  LKSLSEQVQEQTLLVESLKEELQKQKESNTHQEETIERITKEKSLANSALESLRKEMHEL 900

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                E   L  +      +    ++L + +    E +K    L       +    E+  +
Sbjct: 901  TRKNEENQLKLIKQ----VHSLSEQLEEKQLQIREFEK---QLQEKEKRVEQSEKEKASE 953

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            +       E +  L  Q++  G      E     + Q  +Q +AL +      RQ EE++
Sbjct: 954  KRTVVSLREQVSNLKLQLQQLGEVIQEKEKGSSLISQQSKQIIALQEIIEDQKRQLEELK 1013

Query: 600  KQIAQVTAKG----------------EAEKTAILISILHEVHIQIHQIESQEAMIE 639
             +I ++ +                         L   L+E+ +Q+ Q+    +  E
Sbjct: 1014 IKIQELASANQELGKQNQSLSKENLHNKNTVEDLKKKLNELSVQLEQLHQSSSEKE 1069


>gi|206895994|ref|YP_002246976.1| replicative DNA helicase [Coprothermobacter proteolyticus DSM 5265]
 gi|206738611|gb|ACI17689.1| replicative DNA helicase [Coprothermobacter proteolyticus DSM 5265]
          Length = 456

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 15/140 (10%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E ++L + + +   L E    L    +     + L+  +   + E          +RL 
Sbjct: 15  AEVSVLGSCLINKDALAEVAGSLLPEDFYEERHKILFQVMTQMYEEGIPVDLVTFVERLK 74

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                 LL  +  Q   A + S+   A             A   + R L R    +  +I
Sbjct: 75  R---DNLLDVVGGQEYVAQVASSVYTAAN-------VGTYAKLVKERSLQRSLIRVGTEI 124

Query: 603 AQV-----TAKGEAEKTAIL 617
           A++       + + +K   L
Sbjct: 125 ARLGYTGKNIEEDLDKAQQL 144


>gi|194218402|ref|XP_001916645.1| PREDICTED: similar to Coiled-coil domain-containing protein 88B
           (Brain leucine zipper domain-containing protein)
           (Hook-related protein 3) (HkRP3) [Equus caballus]
          Length = 1157

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 23/220 (10%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      ++ R  QL ++      G      K+         S    +  L++ + S   
Sbjct: 615 KEEALMELKSRALQLEEELFQLRQGPVGPGPKDGGEPR----SVEAQRGRLIEVERSNAT 670

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            + E A L   + H         +L  ++      Q+L                E+    
Sbjct: 671 LVAEKAALQGQLQHLE------GQLGSLQ---GRAQELLLQSQRAQEHSSRLQAEKSVLE 721

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIE 599
           +  +     L  L+ +VR A         +  + R   Q  L  ++    L R Q+ E+E
Sbjct: 722 VQGQELHRKLGVLEEEVRAARQ-------SQEEARGQQQALLRDHEALTQLQRRQEAELE 774

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             +A+            L     E+  +  Q+++Q A +E
Sbjct: 775 GLLARHRDL--KANMRALELAHRELQGRHEQLQAQRANVE 812


>gi|326429288|gb|EGD74858.1| hypothetical protein PTSG_07088 [Salpingoeca sp. ATCC 50818]
          Length = 2505

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 89/261 (34%), Gaps = 14/261 (5%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY-SQAIRDRLQQL 435
            E+           +        D R +     +      + + LR         ++ QQL
Sbjct: 790  EAKMRQSWAEANASLEEDREDLDRRRKELSEARESQQQREGELLRRRSELDDTAEKQQQL 849

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
              +  +E         +  +  +Q    QR +Q +       +    +E   + + +   
Sbjct: 850  EMQLASEVERVESLKAQLQQQEEQLQLQQRDVQEAREALDADQAELAKEKEQVRSRV--- 906

Query: 496  AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
               + ++Q++ + +      Q L     +   + +       +    ++     ++++ +
Sbjct: 907  ETAERRWQDVEERQ------QTLADAEKAMEKQARDADERAANLNARQQELEAAMEEVTK 960

Query: 556  QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            Q ++        EA++  V++  QQ      R R LS + +  EK++A       +E   
Sbjct: 961  QRQELARLHEAAEADVSAVQRELQQE---RTRLRQLSEELDAREKELAAAREAHASE-AE 1016

Query: 616  ILISILHEVHIQIHQIESQEA 636
             L     ++  +   + ++EA
Sbjct: 1017 ELAHKQRKLADRQQHLHAREA 1037


>gi|297283564|ref|XP_001109463.2| PREDICTED: myosin-11-like isoform 6 [Macaca mulatta]
          Length = 1963

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 63/212 (29%), Gaps = 22/212 (10%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + +  ++  L ++              +      K   + L +          +   + 
Sbjct: 954  RKKMAQQMLDLEEQLEEXXXXXXXKNATDISFSFSKKERKLLEERISDLTTNLAEEEEKA 1013

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              L      H +++ E    L        EL+KL   L                      
Sbjct: 1014 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLEG-----------------DAS 1056

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
             + E +  L  Q+ +  +  A  E  +          +A   +     ++  E+E  I+ 
Sbjct: 1057 DYHEQIADLQAQIAELKMQLAKKEEELQAALARLDDEIA---QKNNALKKIRELEGHISD 1113

Query: 605  VTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
            +    ++E+ A   +     ++  ++  ++++
Sbjct: 1114 LQEDLDSERAARNKAEKQKRDLGEELEALKTE 1145


>gi|189240374|ref|XP_974183.2| PREDICTED: similar to zipper CG15792-PD [Tribolium castaneum]
          Length = 1953

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 91/270 (33%), Gaps = 16/270 (5%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
              EK+  ++           +E+ +     E+  LE    +    + +++ +  +   ++
Sbjct: 949  QLEKVQCDAKIKKLEEDLALSEDTNQKLLKEKKVLEERSNDLSQALAEEEEKAKHLAKLK 1008

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             + +    +         +  +++ R + +       ++  L + K     S  E   L 
Sbjct: 1009 AKHEATIAELEERLLKDHQQRQESDRTKRKVETEVNDLKEQLAEKK-----SQLEELQLQ 1063

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                   + Q   +   +        + L   + S   E +  L  E   R         
Sbjct: 1064 LGKREEELAQAMVRVDEEGALKAQAQKALRE-MESQLSELQEDLEAEKAARSKAEKLKRD 1122

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            L +    +++  L S  T A   ++R   +Q LA  K+   L  + +  E  +A +  K 
Sbjct: 1123 LNEELEALKNELLDSLDTTAAQQELRSKREQELANLKKN--LEEENQVHEATLADMRHKH 1180

Query: 610  EAEKTAILISILHEVHIQIHQIESQEAMIE 639
                       L  ++ Q+  I+ Q+A IE
Sbjct: 1181 --------TQELASLNEQLENIKKQKASIE 1202


>gi|74216853|dbj|BAE26550.1| unnamed protein product [Mus musculus]
          Length = 807

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    +R A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIRPAHILQEKEEQHQLAVNAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|71151983|sp|Q6URW6|MYH14_MOUSE RecName: Full=Myosin-14; AltName: Full=Myosin heavy chain 14;
            AltName: Full=Myosin heavy chain, non-muscle IIc;
            AltName: Full=Non-muscle myosin heavy chain IIc;
            Short=NMHC II-C
 gi|33638127|gb|AAQ24173.1| nonmuscle myosin II-C heavy chain [Mus musculus]
          Length = 2000

 Score = 41.8 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 71/252 (28%), Gaps = 20/252 (7%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            RE ++      + R   E          + ++     ++ +  RL +  +          
Sbjct: 1385 RELQSTQAQLSEWRRRQEEEAAVLEAGEEARRRAAREAETLTQRLAEKTEAVERLERARR 1444

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            R  ++        G  ++L+ +   K +   +    E A +L  +     ++ + +E   
Sbjct: 1445 RLQQELDDATVDLGQQKQLLSTLEKKQRKFDQLLAEEKAAVLRAVEDRERIEAEGREREA 1504

Query: 508  IRYD---------------NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                                 + + L + L +    +              +   +    
Sbjct: 1505 RALSLTRALEEEQEAREELERQNRALRAELEALLSSKDDVGKNVHELERARKAAEQAASD 1564

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQ-----QALALYKRFRLLSRQKEEIEKQIAQVTA 607
            L  QV +        E   + +    Q         L  R      ++ ++ KQ+     
Sbjct: 1565 LRTQVTELEDELTAAEDAKLRLEVTVQALKAQHERDLQGRDDAGEERRRQLAKQLRDAEV 1624

Query: 608  KGEAEKTAILIS 619
            + + E+    ++
Sbjct: 1625 ERDEERKQRALA 1636



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 84/271 (30%), Gaps = 7/271 (2%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQAI 428
             + +L ++  PL+ +  + E          +  EL+      +  ++ +  +       +
Sbjct: 854  QWWRLFIKVKPLLQVTRQDEVLQARAQELQKVQELQQQSAREVGELQGRVAQLEEERTRL 913

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             ++L+   +          R   +           +  +       +  +    R    +
Sbjct: 914  AEQLRAEAELCSEAEETRARLAARKQELELVVTELEARVGEEEECSRQLQSEKKRLQQHI 973

Query: 489  LTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              L +H    +   Q+L   +      ++K    L     +      E          F 
Sbjct: 974  QELESHLEAEEGARQKLQLEKVTTEAKMKKFEEDLLLLEDQNSKLSKERRLLEERLAEFS 1033

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE----EIEKQIA 603
                + + +V+         EA I D+    ++     +    L R+ +    E+++Q+ 
Sbjct: 1034 SQAAEEEEKVKSLNKLRLKYEATISDMEDRLKKEEKGRQELEKLKRRLDGESSELQEQMV 1093

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +   + E E  A L     E+   + + E +
Sbjct: 1094 EQKQRAE-ELLAQLGRKEDELQAALLRAEEE 1123


>gi|312218512|emb|CBX98458.1| similar to nuclear condensin complex subunit Smc4 [Leptosphaeria
           maculans]
          Length = 1492

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 82/268 (30%), Gaps = 37/268 (13%)

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLR----YYYSQAIRDRLQ------QLF 436
               +       D     +  +     H+ ++  +        + +  + +      +  
Sbjct: 524 CTLYQIYISEFDDHIQVTQESVNELQAHLDEEIAKHQGNEEGIKELEQQYRKGAKGCEQL 583

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           +K   E         K     ++K       Q  L K K +      EA  L     + A
Sbjct: 584 EKKSQELQKEVARIDKETVKFEEKKKFLAGKQKKLEKTKETSSYGRSEADTLAK--QYAA 641

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            L+   +E+A+                   ++ +    E + + L  +  G L  ++  +
Sbjct: 642 DLERYNEEIAE---------------LEQSMKIEEKELESVRRSLAGKTQG-LSDEIAAK 685

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE------ 610
            +    WSA        +     +   L +R    ++    IE++IA + A  E      
Sbjct: 686 QKSLEPWSAKINEKQSAIAVAQSELDILRERENAGAKGIASIEEKIAGLEASKEAKAAEL 745

Query: 611 ---AEKTAILISILHEVHIQIHQIESQE 635
                +   +   L +V  Q+ ++  +E
Sbjct: 746 AECKAEKKRIAKELQKVQAQLEELSQRE 773


>gi|315050258|ref|XP_003174503.1| hypothetical protein MGYG_02032 [Arthroderma gypseum CBS 118893]
 gi|311339818|gb|EFQ99020.1| hypothetical protein MGYG_02032 [Arthroderma gypseum CBS 118893]
          Length = 686

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E+       + + L E+     +   D+  +  G+     +  + +  +  +QA     +
Sbjct: 89  EEARAANTALIEDLKEQVQKAEIVA-DQYRKQLGVLQMRLDDAVSEQTRLEEQAHEKDGQ 147

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKT------AILISILHEVHIQIHQIESQEAMIE 639
              L  + +E+++QI  +  K E E+               E+   I +++   A  +
Sbjct: 148 INPLRDEIKELQRQIRDLEQKHETERESMMADKENQAKREEELEASIQRLKETIAQKD 205


>gi|297680167|ref|XP_002817874.1| PREDICTED: huntingtin-interacting protein 1-like, partial [Pongo
           abelii]
          Length = 1075

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/214 (9%), Positives = 73/214 (34%), Gaps = 3/214 (1%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             ++   +F    +             +        Q   + S +K +L    +  +  +
Sbjct: 381 FDNKFDDIFGSSFSSDPFNFNSQNGVNKDEKDHLIEQLYREISGLKAQLENMKTESQRVV 440

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-HQRLCERGF 546
           L        +  E  ++    +   ++ + L + L     +++     +     +  +  
Sbjct: 441 LQLKGRVSELEAELAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQ 500

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
               +    + + + L     +    +     +Q     +    L R+K+E+E  + +++
Sbjct: 501 ANEQRYSKLKEKYSELVQNHADLLRKNAEVT-KQVSVARQAQVDLEREKKELEDSLERIS 559

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +G+  KT   + +L  +  ++   + +  +++G
Sbjct: 560 DQGQR-KTQEQLEVLESLKQELATSQRELQVLQG 592


>gi|297847466|ref|XP_002891614.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337456|gb|EFH67873.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 226

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            +L+ +  +         A   D       A+ +  + R  +++ +++   + +   + +
Sbjct: 80  DRLNDKFTELSSILEPGRAPKTDKVAIINDAIRMVNQAREEAQKLKDLNSSLQEKIKELK 139

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
            EK   L     ++ I+  +I+ Q   I+
Sbjct: 140 DEK-NELRDEKQKLKIEKERIDQQLKAIK 167


>gi|294102400|ref|YP_003554258.1| replicative DNA helicase [Aminobacterium colombiense DSM 12261]
 gi|293617380|gb|ADE57534.1| replicative DNA helicase [Aminobacterium colombiense DSM 12261]
          Length = 450

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 45/143 (31%), Gaps = 14/143 (9%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            ++       E A+L   +     L    + L    + +   +  +  +       K   
Sbjct: 7   NRVPPSSLEAERAVLGACLVDREALNMVMETLVPDDFYDLNHRLAFDIICDMAQRDKPVD 66

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF----- 588
                  L E    EL++++  Q   AGL +  T     +      +  ++++R      
Sbjct: 67  A---LTFLEESTKRELVEKIGGQPFIAGLVNGVTTTANAEYYALIVKDKSIHRRLISAGN 123

Query: 589 ------RLLSRQKEEIEKQIAQV 605
                     R+ +EI ++  + 
Sbjct: 124 TIVHLGYSEEREVDEILEEAEKA 146


>gi|284048513|ref|YP_003398852.1| type I restriction-modification system, M subunit [Acidaminococcus
           fermentans DSM 20731]
 gi|283952734|gb|ADB47537.1| type I restriction-modification system, M subunit [Acidaminococcus
           fermentans DSM 20731]
          Length = 857

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 10/135 (7%)

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
            +L ++    N LQ++   + +   E      E I   L E G   ++K +   +++   
Sbjct: 663 DQLIELHNKQNRLQEIPEAIQNLLDEMGEEEKESIASALNENGDAFVVKNISPLLKELKK 722

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
                E       +  QQ  +L K  + L R  +E E+++ + T +     T   I  L 
Sbjct: 723 NPEENEM----ALKTLQQVESLDKEEKSLKRAVKESEEKLVEQTREKIHNLTPDEIIHLL 778

Query: 623 EVH------IQIHQI 631
           ++        Q+ Q+
Sbjct: 779 DLQWIRPISTQLAQL 793


>gi|261329519|emb|CBH12501.1| kinesin K39, putative [Trypanosoma brucei gambiense DAL972]
          Length = 3831

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 96/320 (30%), Gaps = 40/320 (12%)

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER------AELEIHLK 409
           G+DP        K    +   +         ++E E                 EL I   
Sbjct: 437 GKDPTYVRELEEKLVLLEAEAQKRAADLHALEKEREKNIIREKMLYATEVEREELLIKAT 496

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK---NARHRDQKGPSQRL 466
                +++ K R  Y + +  RL+  + +   E     R  +      R R         
Sbjct: 497 ELERQVEESKRRAEYHEEMSQRLKDEYAQREQELLEKVRQHRAEIEGIRERKDAEMLSSQ 556

Query: 467 MQSSLVKGKLSKKPSLREAAL---------LLTLINHPAILQEQYQELADIRYDNNELQK 517
            Q S V  +L ++   RE AL         L   + +     E++ EL      N EL  
Sbjct: 557 QQLSRVMSELEQERHSREEALHILRERQEQLSAALCNSQQSSEKHTELQQ---QNEELSH 613

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV----- 572
               L  +   Q+  L +    RL      E+ + LD ++ +       T  +++     
Sbjct: 614 RMQKLLEECEAQQRILSDLEVFRLERNELEEIAQFLDLKLEETEHRHIKTINHLLTTIGM 673

Query: 573 --------------DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
                         +V     +    +   R    +  ++ +       K   +K  +L 
Sbjct: 674 HTLWQAELLTTVGTEVETQLTKCNQHHFDQRAAMEKNHKLFQMEQHQMTKKLEQKILMLE 733

Query: 619 SILHEVHIQIHQIESQEAMI 638
             + E   Q+   +  EA I
Sbjct: 734 KEIEEAKKQLDTTKQSEAAI 753


>gi|256846385|ref|ZP_05551842.1| replicative DNA helicase [Fusobacterium sp. 3_1_36A2]
 gi|256718154|gb|EEU31710.1| replicative DNA helicase [Fusobacterium sp. 3_1_36A2]
          Length = 446

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/159 (8%), Positives = 50/159 (31%), Gaps = 4/159 (2%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K        E AL+  +  +  +  E    +    +   E   ++  +   + + K    
Sbjct: 7   KKIPHSLEAERALIGGIFYNQDLFDEIRDIVKKEDFYKVEHSAIYDAIEKVYSDSKGIDA 66

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I + + +       +++ + + D      ++   +        +  A+ +R   +  +
Sbjct: 67  ILIDEEIKKTNSKNK-EEILQVLSDILDEITSSYNLLEYAN--LIKEKAMLRRLGNVGVE 123

Query: 595 KEEIE-KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             ++    +       +  +  +L    + +   I  ++
Sbjct: 124 ITQLAYNDVRVAEEIIDEAEAKVLNLSKNILKNSIVDMK 162


>gi|225405630|ref|ZP_03760819.1| hypothetical protein CLOSTASPAR_04851 [Clostridium asparagiforme
           DSM 15981]
 gi|225042843|gb|EEG53089.1| hypothetical protein CLOSTASPAR_04851 [Clostridium asparagiforme
           DSM 15981]
          Length = 481

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           RG  E  K+  +        +   E      ++  +  L    R   L RQ  E++K++ 
Sbjct: 98  RGLEEQAKRRGQLEAQKKKGTQALENCRERRQEAGKARLRAETRRTELERQIAELKKRL- 156

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAMIEGFGKMSGRL 648
                G+        + L E   ++  + ++  A  +   + SGR+
Sbjct: 157 ---PHGDRAAAE---AELTEHRRRLLAMEQALNAAEKRLNEYSGRV 196


>gi|206895563|ref|YP_002247293.1| peptide chain release factor 2 [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738180|gb|ACI17258.1| peptide chain release factor 2 [Coprothermobacter proteolyticus DSM
           5265]
          Length = 370

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/109 (10%), Positives = 39/109 (35%), Gaps = 3/109 (2%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLD--RQVRDAGLWSATTEANIVDVRQGYQQ 580
             + ++ +     E  + +      +   +L   R+V +     +  +  +   R+  Q+
Sbjct: 3   LEEIIQARDNTASEFQEIVENIKLDDKKAELSDVRKVYEKPDIWSDPDKAVAVARK-VQR 61

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                +R   +    ++++  +  +    + E     ++ L E+  +I 
Sbjct: 62  LEEEIERVEQIENLLKDLDAALELLQEGYDEELFEHALATLKELQQRIE 110


>gi|148678479|gb|EDL10426.1| mCG140437, isoform CRA_b [Mus musculus]
          Length = 1487

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1113 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQSTLDAEIRSRNDAIRLKKKMEG 1172

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1173 DLNEM-EIQLNHSNRMAAEALRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAM 1225

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1226 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1285

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1286 ISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1345

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1346 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1377


>gi|57999440|emb|CAI45931.1| hypothetical protein [Homo sapiens]
          Length = 2039

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 93/335 (27%), Gaps = 17/335 (5%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 1461 RRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 1520

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1521 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1580

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E  L   
Sbjct: 1581 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELEGKLATL 1639

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1640 SDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKNQLEESEFT- 1698

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1699 ----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1754

Query: 609  GEA---------EKTAILISILHEVHIQIHQIESQ 634
                         + +  ++ ++++  Q+ +   +
Sbjct: 1755 MNKLMKKHKAAVAQASRDLAQINDLQAQLEEANKE 1789



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 97/311 (31%), Gaps = 46/311 (14%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R        +   + L  +++  + E E++     ++       L+  +  + DQ  R  
Sbjct: 1593 RDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREK-----RELEGKLATLSDQVNRRD 1647

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +      RL++  ++     +               K    +L ++ L + + +   +++
Sbjct: 1648 FESE--KRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQL-KNQLEESEFTCAAAVK 1704

Query: 484  EAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY----------- 531
                +   I    + + +  +    +    + LQ+  + + +   E +            
Sbjct: 1705 ARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNKLMKKHKA 1764

Query: 532  ---------FLPEEIHQRLCER-----GFGELLKQLDRQVRDAGLWSATT------EANI 571
                         ++  +L E         E L+ L  QV                EA I
Sbjct: 1765 AVAQASRDLAQINDLQAQLEEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKI 1824

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVH 625
             ++    +      KR   L+ + +E  +++ +           E E+   L   L +  
Sbjct: 1825 RELETRLEFERTQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTK 1884

Query: 626  IQIHQIESQEA 636
             ++  +  +EA
Sbjct: 1885 EEMGGLARKEA 1895


>gi|42520234|ref|NP_966149.1| replicative DNA helicase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409972|gb|AAS14083.1| replicative DNA helicase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 483

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 53/186 (28%), Gaps = 16/186 (8%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           +S   +          E  L+  +I    I       +    + +   Q +++ +     
Sbjct: 11  RSVDKEICKLPHNLEAEQMLIGAMIRDNRICDAVEDTITAENFYDPLHQSIFTQISKTRK 70

Query: 528 EQKYFLPEEIHQRLCER------GFGELLKQLDRQVRDAGLWSATTEANIV--------D 573
                    +             G  E L +L  +   A    + T              
Sbjct: 71  HGIVANELSLKMFFENDQAFTECGGVEYLAKLAAKASIALDIYSLTRIIRDTYLRRCLIK 130

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-TAILISILHEVHIQIHQIE 632
           + Q        Y        Q E+   ++  +  K + EK    L S + +V  +I  ++
Sbjct: 131 LGQEIVGDSYNYDIENPAQAQIEQAMTKLFNLAVKKQGEKTYIKLASSIKDVVEKISTLK 190

Query: 633 SQ-EAM 637
           +  EA+
Sbjct: 191 NNPEAL 196


>gi|162287370|ref|NP_001002011.2| prelamin-A/C isoform A [Mus musculus]
 gi|85700428|sp|P48678|LMNA_MOUSE RecName: Full=Prelamin-A/C; Contains: RecName: Full=Lamin-A/C;
           Flags: Precursor
 gi|1794159|dbj|BAA08569.1| lamin A [Mus musculus domesticus]
 gi|15929761|gb|AAH15302.1| Lamin A [Mus musculus]
 gi|62739248|gb|AAH94020.1| Lamin A [Mus musculus]
 gi|74151192|dbj|BAE27717.1| unnamed protein product [Mus musculus]
 gi|112378771|gb|ABI16251.1| lamin A [Mus musculus]
 gi|148683328|gb|EDL15275.1| lamin A, isoform CRA_a [Mus musculus]
          Length = 665

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|126090201|ref|YP_001041682.1| hypothetical protein Sbal_4564 [Shewanella baltica OS155]
 gi|126174494|ref|YP_001050643.1| exodeoxyribonuclease V subunit gamma [Shewanella baltica OS155]
 gi|125997699|gb|ABN61774.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS155]
 gi|125999857|gb|ABN63927.1| hypothetical protein Sbal_4564 [Shewanella baltica OS155]
          Length = 1260

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 66/527 (12%), Positives = 148/527 (28%), Gaps = 30/527 (5%)

Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG--LLID 191
                    + +   + +  I++++L       +      R       +  E    L   
Sbjct: 125 TTNTADTSEHFNISDMTADDIKLYQLCGRIADIFDQYLVYRPDWILAWEQNEHPESLTKS 184

Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNF 251
            +            LI   R    Q      R     + +  LN+P+T L    + L+ F
Sbjct: 185 LNEDQRWQPILWRALIAFNRDELNQSHYH--RANLHSDLIAALNNPDTSLAKLPQRLFVF 242

Query: 252 FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLW 311
             +    Q              I+L               +N          + QL  LW
Sbjct: 243 GISSMAPQTLEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQYAGKRQLAELW 302

Query: 312 KLSPRI--VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
           +    +   L  +    G       ++L   H   G+ V          P S        
Sbjct: 303 EDKLEVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNSPHSHASMLHGV 362

Query: 370 AFEKLIVESLPL---VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
            ++ L +++L      D    +  +NR     D+ +       + +  +  + L  +  +
Sbjct: 363 QYDILEMQTLDRVLGPDAELYQNVKNRRLLKRDDESIRVKSCHSPLREV--ETLHDHLLE 420

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + + +    +  +        Y          K     +  +   +G   + P +    
Sbjct: 421 LLSNDVDLTPKDIVVMMPDVAAYAPYIDAVFSAKQDLHYIPYAIADRGAAQESPLINSFL 480

Query: 487 LLLTL------INHPAILQEQYQELADIRYDNNELQKLWSFL----FSDFVEQKYFLPEE 536
            LL +      +     + E    L   + D++ELQ +  +L         +++  L + 
Sbjct: 481 NLLGINQSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRDEQSRLKQG 540

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +           + + +                 +  +     QAL     F  +  +  
Sbjct: 541 VPAFEQNSWAFGIKRLILGYALSDDAPLYQDHLIVTGIEGQSAQALGKLLNFIEVLDETA 600

Query: 597 EIEK-------QIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQ 634
           +I         ++A++T   +A  +        L E+   I  +E +
Sbjct: 601 QILALPQVGALRLAELTDLLDAFYDTDEDEREQLQEIRDAIAALEQE 647


>gi|332638234|ref|ZP_08417097.1| Barmotin [Weissella cibaria KACC 11862]
          Length = 1185

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 83/219 (37%), Gaps = 11/219 (5%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKK---NARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
           + +  ++++L  +     + +G    +               ++ +  L + +  K    
Sbjct: 695 EQLERQVRELDDELKATTTAFGEAQDQVLVANEAAQAATAQLQVAEERLAQAQKEKSALT 754

Query: 483 REAALLLT-LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            E ++  +  ++H +++ +   ++A +   + +     + L S   EQ     +      
Sbjct: 755 YEFSVSSSGTVDHASLVADNQHDIATL---SEQQAAQQAQLTSLLAEQTTLSDKMAT--- 808

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            ++    L  QL     +    S   E  +  ++   Q+  A  ++   L+  + +++++
Sbjct: 809 VDQELTALQAQLATAQANVQAASVRHEDVVEQIQAEEQRLAAYQQQMTDLTADQGDVQQR 868

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           +A       A+K       L ++  ++ ++  + A+ EG
Sbjct: 869 LANDLTGTLADK-EATEDELTDLATELEELRQEIALAEG 906


>gi|327268898|ref|XP_003219232.1| PREDICTED: filamin A-interacting protein 1-like [Anolis
           carolinensis]
          Length = 1124

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 101/281 (35%), Gaps = 35/281 (12%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           E +  + +  +D + ++  E       ++   +E   +  +  ++D+K ++       ++
Sbjct: 136 EDIYEKPMGELDNVMEKHKET-HRRMLEQLLMVEKSHRQTLYELEDEKRKHA---EYMEK 191

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
             +       E     +  +++  ++ +K        S L +    +   L+   L+   
Sbjct: 192 SDEFTNLLEQEQERLKKLIEQDTAYQGKKEKENTKKISRLKE----ELTKLKSFTLM--- 244

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
                ++ EQ +    +   + ++Q+L     S     +     E   +  E     L  
Sbjct: 245 -----VVDEQEKLTEQLSLQSKKIQELT---ISAEQAHEKLSLAETKAQEEEEKALRLEA 296

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-----QIAQVT 606
           +L  Q           ++ +  +     Q   L  +   LSRQ +E+E+     + A+  
Sbjct: 297 ELRAQANKVSQEQ---DSTMAKLTNEESQNRQLRLKLTALSRQIDELEETNKSLRKAEEE 353

Query: 607 AKGEAEKTAI-------LISILHEVHIQIHQIES-QEAMIE 639
            +   EK          L+S + E+  ++ ++E   E +I+
Sbjct: 354 LQDLREKINRGECGNSTLLSEVEELRKRVLEMEGKDEELIK 394


>gi|323702283|ref|ZP_08113949.1| hypothetical protein DesniDRAFT_1161 [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532773|gb|EGB22646.1| hypothetical protein DesniDRAFT_1161 [Desulfotomaculum nigrificans
           DSM 574]
          Length = 260

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 47/114 (41%), Gaps = 2/114 (1%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            +   EQ      E+ + L         +Q +R    A   +A  E    ++ +   QA 
Sbjct: 126 VALLREQTAKELAEMKEALERAENAR--EQSNRLASLAEQAAAAAETRAKNLEEQAAQAT 183

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           A  +    L++Q ++ ++ + +   + E +K   +++   E+  +I +++   A
Sbjct: 184 AYRQERDSLAQQLKQAQEALERAAERAELDKEKAVLAAQREMIQEIRELQEALA 237


>gi|294865716|ref|XP_002764472.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983]
 gi|239863939|gb|EEQ97189.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983]
          Length = 703

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/284 (8%), Positives = 84/284 (29%), Gaps = 11/284 (3%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                      + +  +    + + +     R           E         +  +   
Sbjct: 91  SCSGDTTERLMRELEGARLEGNEVRQCLVNQREGYEKTMAQLEENLRDVEGKLVAAEVSV 150

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWK-----KNARHRDQKGPSQRLMQSSLVKGKL 476
                 +  R ++L ++            +     +      Q+  ++   + S++    
Sbjct: 151 EESRAELAAREEELSREVKERAEAVEGLERQLEEARGKVDELQRAQAEEEEKYSVLAQTN 210

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN-ELQKL-WSFLFSD--FVEQKYF 532
            +  +  E  +    + +   + E  + L +I+ D+  E+ ++    +      +E    
Sbjct: 211 ERHIASLERQIEQARVGYEKHIDEMNKHLLEIQSDHEVEIARIGKEAIIEHDELIEAYNA 270

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              ++ + + E+         +  V    L  A  +       +   +   L +    + 
Sbjct: 271 RIAQLQEEIDEKDAKIETLSKEATVLVETLKDAARDEAAQISEEYEGKMEDLERELGRVR 330

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIHQIESQE 635
            + EE++++  +   +    +   ++     E   ++ ++E  E
Sbjct: 331 AELEEVQRE-GEGRLERAMAEFEEMLRQKEAEYRQELQRMEEAE 373


>gi|148690793|gb|EDL22740.1| myosin, heavy polypeptide 14, isoform CRA_a [Mus musculus]
          Length = 2008

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 71/252 (28%), Gaps = 20/252 (7%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            RE ++      + R   E          + ++     ++ +  RL +  +          
Sbjct: 1377 RELQSTQAQLSEWRRRQEEEAAVLEAGEEARRRAAREAETLTQRLAEKTEAVERLERARR 1436

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            R  ++        G  ++L+ +   K +   +    E A +L  +     ++ + +E   
Sbjct: 1437 RLQQELDDATVDLGQQKQLLSTLEKKQRKFDQLLAEEKAAVLRAVEDRERIEAEGREREA 1496

Query: 508  IRYD---------------NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                                 + + L + L +    +              +   +    
Sbjct: 1497 RALSLTRALEEEQEAREELERQNRALRAELEALLSSKDDVGKNVHELERARKAAEQAASD 1556

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQ-----QALALYKRFRLLSRQKEEIEKQIAQVTA 607
            L  QV +        E   + +    Q         L  R      ++ ++ KQ+     
Sbjct: 1557 LRTQVTELEDELTAAEDAKLRLEVTVQALKAQHERDLQGRDDAGEERRRQLAKQLRDAEV 1616

Query: 608  KGEAEKTAILIS 619
            + + E+    ++
Sbjct: 1617 ERDEERKQRALA 1628



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 84/271 (30%), Gaps = 7/271 (2%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQAI 428
             + +L ++  PL+ +  + E          +  EL+      +  ++ +  +       +
Sbjct: 846  QWWRLFIKVKPLLQVTRQDEVLQARAQELQKVQELQQQSAREVGELQGRVAQLEEERTRL 905

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             ++L+   +          R   +           +  +       +  +    R    +
Sbjct: 906  AEQLRAEAELCSEAEETRARLAARKQELELVVTELEARVGEEEECSRQLQSEKKRLQQHI 965

Query: 489  LTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              L +H    +   Q+L   +      ++K    L     +      E          F 
Sbjct: 966  QELESHLEAEEGARQKLQLEKVTTEAKMKKFEEDLLLLEDQNSKLSKERRLLEERLAEFS 1025

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE----EIEKQIA 603
                + + +V+         EA I D+    ++     +    L R+ +    E+++Q+ 
Sbjct: 1026 SQAAEEEEKVKSLNKLRLKYEATISDMEDRLKKEEKGRQELEKLKRRLDGESSELQEQMV 1085

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +   + E E  A L     E+   + + E +
Sbjct: 1086 EQKQRAE-ELLAQLGRKEDELQAALLRAEEE 1115


>gi|42794779|ref|NP_976063.1| myosin-XVIIIa isoform b [Homo sapiens]
 gi|119571562|gb|EAW51177.1| hCG27198, isoform CRA_c [Homo sapiens]
 gi|119571564|gb|EAW51179.1| hCG27198, isoform CRA_c [Homo sapiens]
          Length = 2039

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 93/335 (27%), Gaps = 17/335 (5%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 1461 RRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 1520

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1521 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1580

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E  L   
Sbjct: 1581 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELEGKLATL 1639

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1640 SDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKNQLEESEFT- 1698

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1699 ----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1754

Query: 609  GEA---------EKTAILISILHEVHIQIHQIESQ 634
                         + +  ++ ++++  Q+ +   +
Sbjct: 1755 MNELMKKHKAAVAQASRDLAQINDLQAQLEEANKE 1789



 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 98/311 (31%), Gaps = 46/311 (14%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R        +   + L  +++  + E E++     ++       L+  +  + DQ  R  
Sbjct: 1593 RDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREK-----RELEGKLATLSDQVNRRD 1647

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +      RL++  ++     +               K    +L ++ L + + +   +++
Sbjct: 1648 FESE--KRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQL-KNQLEESEFTCAAAVK 1704

Query: 484  EAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY----------- 531
                +   I    + + +  +    +    + LQ+  + + +   E +            
Sbjct: 1705 ARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKA 1764

Query: 532  ---------FLPEEIHQRLCER-----GFGELLKQLDRQVRDAGLWSATT------EANI 571
                         ++  +L E         E L+ L  QV                EA I
Sbjct: 1765 AVAQASRDLAQINDLQAQLEEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKI 1824

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVH 625
             ++    +      KR   L+ + +E  +++ +           E E+   L   L +  
Sbjct: 1825 RELETRLEFERTQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTK 1884

Query: 626  IQIHQIESQEA 636
             ++ ++  +EA
Sbjct: 1885 EEMGELARKEA 1895


>gi|86610153|ref|YP_478915.1| TonB-dependent heme/hemoglobin receptor family protein
           [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558695|gb|ABD03652.1| transporter, TonB-dependent heme/hemoglobin receptor family
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 809

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 16/37 (43%)

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           L  Q  E++ QI     +G+  +   L + L  +  +
Sbjct: 52  LPEQIRELKAQIEAARQRGDQAEVERLQAELRALQQE 88


>gi|54633200|dbj|BAD66836.1| KIAA0216 splice variant 1 [Homo sapiens]
          Length = 2046

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 93/335 (27%), Gaps = 17/335 (5%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 1453 RRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 1512

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1513 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1572

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E  L   
Sbjct: 1573 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELEGKLATL 1631

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1632 SDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKNQLEESEFT- 1690

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1691 ----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1746

Query: 609  GEA---------EKTAILISILHEVHIQIHQIESQ 634
                         + +  ++ ++++  Q+ +   +
Sbjct: 1747 MNELMKKHKAAVAQASRDLAQINDLQAQLEEANKE 1781



 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 98/311 (31%), Gaps = 46/311 (14%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R        +   + L  +++  + E E++     ++       L+  +  + DQ  R  
Sbjct: 1585 RDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREK-----RELEGKLATLSDQVNRRD 1639

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +      RL++  ++     +               K    +L ++ L + + +   +++
Sbjct: 1640 FESE--KRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQL-KNQLEESEFTCAAAVK 1696

Query: 484  EAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY----------- 531
                +   I    + + +  +    +    + LQ+  + + +   E +            
Sbjct: 1697 ARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKA 1756

Query: 532  ---------FLPEEIHQRLCER-----GFGELLKQLDRQVRDAGLWSATT------EANI 571
                         ++  +L E         E L+ L  QV                EA I
Sbjct: 1757 AVAQASRDLAQINDLQAQLEEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKI 1816

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVH 625
             ++    +      KR   L+ + +E  +++ +           E E+   L   L +  
Sbjct: 1817 RELETRLEFERTQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTK 1876

Query: 626  IQIHQIESQEA 636
             ++ ++  +EA
Sbjct: 1877 EEMGELARKEA 1887


>gi|293375253|ref|ZP_06621536.1| ATP-dependent chaperone protein ClpB [Turicibacter sanguinis PC909]
 gi|325841250|ref|ZP_08167351.1| ATP-dependent chaperone protein ClpB [Turicibacter sp. HGF1]
 gi|292646114|gb|EFF64141.1| ATP-dependent chaperone protein ClpB [Turicibacter sanguinis PC909]
 gi|325489931|gb|EGC92278.1| ATP-dependent chaperone protein ClpB [Turicibacter sp. HGF1]
          Length = 861

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/215 (8%), Positives = 70/215 (32%), Gaps = 17/215 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI +     R ++K   +      +  +++    + ++  + S+ + A++       
Sbjct: 320 YREYIEKDPALERRFQKVQVNEPTVEDTVSILRGLKDRFEVHHRVSISDRAIVAAATLSD 379

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +     + + + S   E        +   + E    +   +  +
Sbjct: 380 RYITDRFLPDKAIDLIDEACATIRTEIDSLPEELDRINRRVMQLEIEEAALKKETDEFSK 439

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           Q           +  + D++         +++ +       +++K++     + E  +  
Sbjct: 440 QRLHTL------QKELADLKDELNVLKLQWEKEKQAIHGVADLKKELELARRQLEDAQAR 493

Query: 616 ILISILHEVH-----------IQIHQIESQEAMIE 639
                  E+             ++  ++  EA  E
Sbjct: 494 GEYEKAAELQYGKIPGLEKQIAEVEAMQQDEAGKE 528


>gi|195953147|ref|YP_002121437.1| SMC domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932759|gb|ACG57459.1| SMC domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 961

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 91/261 (34%), Gaps = 22/261 (8%)

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
             E E+ +    +   ++  ++++  + I   + R    +   ++L +  +    E    
Sbjct: 488 YHEKEHTTMLDIEVEEDIIKNIEDIKSKIALSEDRLKSKKEALEKLSEEIESLEKELLEK 547

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
                +    + ++     + ++     KL  K    E  +L        +L +Q + L 
Sbjct: 548 ETLQSRLKELKQRREFQDNIQKNLE---KLKSKKDKLENEIL--------LLNKQKEGLE 596

Query: 507 DIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
              Y+  E L+ L   L S  V++ +   ++      +    E+  ++  + +       
Sbjct: 597 KDLYNKKESLKTLEKELLSYGVKEGHLQNKKNAIDQYKNKLDEIRNEIQNKRKIYEDTKE 656

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
                   +    +Q  +L  +   +S +  E+E +++ +    + EK    ++ L    
Sbjct: 657 MINTYEKSIMLLKEQVSSLSVKKSTISEELNELETKLSSIE---DKEKVLEELNRLENYE 713

Query: 626 I-------QIHQIESQEAMIE 639
                   ++  ++ Q  + E
Sbjct: 714 RTYNEYMVKLSNLKEQIQLKE 734


>gi|148694284|gb|EDL26231.1| cingulin-like 1, isoform CRA_b [Mus musculus]
          Length = 1264

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 82/229 (35%), Gaps = 19/229 (8%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + ++D+L ++  +  +      R  +K A   +     Q L    + K +       RE
Sbjct: 663 IRDLQDQLSEMHDELDSTKRSEDR--EKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRE 720

Query: 485 AALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVE-----------QKYF 532
             L          +    QE+  ++   + ELQ L   +                 ++  
Sbjct: 721 RELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQ 780

Query: 533 LPEEIHQRLCERGFGEL---LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
              ++ +++ +    +L   + +L+R+           + +    ++  ++  +  ++  
Sbjct: 781 AEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLE 840

Query: 590 --LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             L+  +KEE E   A+   + E E+    +S + +   ++ +    EA
Sbjct: 841 EALVHARKEEKEATCARRALEKELEQAQRELSQVSQEQKELLEKLRDEA 889



 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 88/252 (34%), Gaps = 29/252 (11%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
           +     N  +ER  +   L+      + Q       Q    RL++   +         + 
Sbjct: 596 SNQNQQNIKEERERMREDLEELRVRHQSQVEETATLQ---RRLEESEGELRKSLEELFQV 652

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA-ALLLTLINHP----AILQEQYQE 504
             +  +H+ +    Q  +     +   +K+   RE  AL+  L+        +L  + ++
Sbjct: 653 KMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQAKQDLQDLLIAKEEQ 712

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
              +R    EL  L   L  +         +++ ++  +     L + ++   ++  + +
Sbjct: 713 EDLLRKRERELTALKGALKEEVSSH-DQEMDKLKEQY-DAELQALRESVEEATKNVEVLA 770

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           + + ++     +          R ++L  + E+++ +IA++                 ++
Sbjct: 771 SRSNSSEQSQAEA-------DLREKVLKEENEKLQGRIAELE------------RRAAQL 811

Query: 625 HIQIHQIESQEA 636
             Q+  ++  EA
Sbjct: 812 QRQMEDVKGDEA 823



 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 83/301 (27%), Gaps = 24/301 (7%)

Query: 359 PDSFIRCYGKTAFEKLIV----ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
           P            +         +      +     +    +  D        +   I  
Sbjct: 525 PSDSGTQATPDLLKGQQELTQQTNEETAKQILYNYLKEGGTDNEDATKRKVNLVFEKIQT 584

Query: 415 IKD--------QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
           +K                 +  R+R+++  ++    H           R  ++     R 
Sbjct: 585 LKSRAAGSAQGSNQNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRK 644

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
               L + K+ ++    E   L        + +   +  +  R ++ E   L   L    
Sbjct: 645 SLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSTKRSEDREKGALIEELLQAK 699

Query: 527 VEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            + +  L  +  Q    R  ER    L   L  +V          +       Q  ++++
Sbjct: 700 QDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESV 759

Query: 583 ALYKRFRLLSRQKE---EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               +   +   +    E  +  A +  K   E+   L   + E+  +  Q++ Q   ++
Sbjct: 760 EEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVK 819

Query: 640 G 640
           G
Sbjct: 820 G 820



 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 44/326 (13%), Positives = 101/326 (30%), Gaps = 20/326 (6%)

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA----FEKLIV 376
            +G+          + +         R     LS   D     +           E+L+ 
Sbjct: 638 SEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQ 697

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ---KLRYYYSQAIRDRLQ 433
               L D+L  +E +       +                 DQ   KL+  Y   ++   +
Sbjct: 698 AKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRE 757

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
            + +          R         +     + L + +        +   R A L   +  
Sbjct: 758 SVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQM-- 815

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
              +  ++ Q    +R   +E+Q+L   L     E+K        +R  E+   +  ++L
Sbjct: 816 -EDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCA---RRALEKELEQAQREL 871

Query: 554 DR--QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ---IAQVTAK 608
            +  Q +   L     EA   +  +  +  +   +    L +  E+++K+   IA+ +  
Sbjct: 872 SQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERW--HLDKTIEKLQKEMADIAEASRT 929

Query: 609 GEAEKTAILISILHEVHIQIHQIESQ 634
              E    L     +   ++ ++++Q
Sbjct: 930 SSLELQKQLGEYKEKNRRELAEMQTQ 955


>gi|146338792|ref|YP_001203840.1| hypothetical protein BRADO1726 [Bradyrhizobium sp. ORS278]
 gi|146191598|emb|CAL75603.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 424

 Score = 41.8 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 67/208 (32%), Gaps = 14/208 (6%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + +   L    ++   E     +      R    K   +++ Q+     +        E 
Sbjct: 19  EQLAAPLIAETRRQF-EKQLAAKEADFGRREAQLKAAQEQIAQARAAIDQQVAAKLKAER 77

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
           A +          Q    E+ +    + +L +L   + S   +       +      +R 
Sbjct: 78  AAIAQA-EAERARQAVADEIGN---RDRQLAELHQAIVSKDAKLADAQKAQAEMLRKQRE 133

Query: 546 FGELLKQLDRQVRDAGLWS--ATTEANIVDVRQGYQQALALYK-RFRLLSRQKEEIEKQI 602
             E  ++LD  +      +  A  +   ++  +  +  +A  + +   + RQ EE+ ++ 
Sbjct: 134 LDEARRELDLTIETKVQENLVAVRDKARLEAEEALRAKVAEKETQIAGMQRQIEELRRKA 193

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQ 630
            Q + + + E          E+  Q+  
Sbjct: 194 EQGSQQLQGEALE------IELESQLRA 215


>gi|328954749|ref|YP_004372082.1| ATP-dependent chaperone ClpB [Coriobacterium glomerans PW2]
 gi|328455073|gb|AEB06267.1| ATP-dependent chaperone ClpB [Coriobacterium glomerans PW2]
          Length = 872

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 45/130 (34%), Gaps = 2/130 (1%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    +L   L S  VE      +    ++ E+   +      +    +      
Sbjct: 390 AIDLVDEAASRLRMELDSMPVEIDATERQLTQMQIEEQALMKEADDASKDRLGSLREEIA 449

Query: 567 TEANIVDVRQG-YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHEV 624
                ++V++  +          + L +Q ++   ++ + T +G+ E+   L  S++  +
Sbjct: 450 EIQEKLNVQKAGWLNQKNAIDDVQKLKQQIDDARGELERATREGDLERAGELRYSLIPGL 509

Query: 625 HIQIHQIESQ 634
             Q    E +
Sbjct: 510 EQQRQAAEDE 519


>gi|297700411|ref|XP_002827239.1| PREDICTED: LOW QUALITY PROTEIN: myosin-XVIIIa-like [Pongo abelii]
          Length = 2039

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 93/335 (27%), Gaps = 17/335 (5%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 1461 RRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 1520

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1521 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1580

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E  L   
Sbjct: 1581 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELEGKLATL 1639

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1640 SDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKNQLEESEFT- 1698

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1699 ----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1754

Query: 609  GEA---------EKTAILISILHEVHIQIHQIESQ 634
                         + +  ++ ++++  Q+ +   +
Sbjct: 1755 MNELMKKHKAAVAQASRDLAQINDLQAQLEEANKE 1789



 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 98/311 (31%), Gaps = 46/311 (14%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R        +   + L  +++  + E E++     ++       L+  +  + DQ  R  
Sbjct: 1593 RDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREK-----RELEGKLATLSDQVNRRD 1647

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +      RL++  ++     +               K    +L ++ L + + +   +++
Sbjct: 1648 FESE--KRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQL-KNQLEESEFTCAAAVK 1704

Query: 484  EAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY----------- 531
                +   I    + + +  +    +    + LQ+  + + +   E +            
Sbjct: 1705 ARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKA 1764

Query: 532  ---------FLPEEIHQRLCER-----GFGELLKQLDRQVRDAGLWSATT------EANI 571
                         ++  +L E         E L+ L  QV                EA I
Sbjct: 1765 AVAQASRDLAQINDLQAQLEEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKI 1824

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVH 625
             ++    +      KR   L+ + +E  +++ +           E E+   L   L +  
Sbjct: 1825 RELETRLEFERTQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTK 1884

Query: 626  IQIHQIESQEA 636
             ++ ++  +EA
Sbjct: 1885 EEMGELARKEA 1895


>gi|296201249|ref|XP_002806839.1| PREDICTED: LOW QUALITY PROTEIN: myosin-3-like [Callithrix jacchus]
          Length = 1940

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 84/265 (31%), Gaps = 17/265 (6%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +    +D     + E       + +  +E         ++ +       + +   L ++ 
Sbjct: 1568 QVKSEIDRKIAEKDEEIEQLKRNYQRTVETMQSALDAEVRSRNEAIRLKKKMEGDLNEIE 1627

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
             +    +       K     + Q   +Q  +  +L       +  L+E   L  +     
Sbjct: 1628 IQLSHANRQAAETLKHLRSVQGQLKDTQLHLDDAL-----RGQEDLKEQ--LAIVERRAN 1680

Query: 497  ILQEQYQELADIRYDNNELQKLW-SFLFS-----DFVEQKYFLPEEIHQRLCERGFGELL 550
            +LQ + +EL          +KL    L         +  +        ++L E    +L 
Sbjct: 1681 LLQAEVEELRATLEQTERARKLAEQELLDSNERVQLLHTQNTSLIHTKKKL-ETDLMQLQ 1739

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
             +++   RDA       +  I D     ++          L R K+ +E+ +  +  + +
Sbjct: 1740 SEVEDASRDARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLD 1799

Query: 611  AEKTAIL---ISILHEVHIQIHQIE 632
              +   L      + ++  +I ++E
Sbjct: 1800 EAEQLALKGGKKQIQKLEARIRELE 1824


>gi|269929386|ref|YP_003321707.1| von Willebrand factor type A [Sphaerobacter thermophilus DSM 20745]
 gi|269788743|gb|ACZ40885.1| von Willebrand factor type A [Sphaerobacter thermophilus DSM 20745]
          Length = 713

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 14/133 (10%)

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQ---RLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
           L++L + +  +         E                L + LD   R      +  ++  
Sbjct: 246 LREL-NEMLEERARGGEPDFERFMHKYGHYFGPNINSLDELLDHLARQMAAMQSLLDSMT 304

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA----------KGEAEKTAILISIL 621
            ++R   Q+AL        + ++  ++ + +AQ+             G+ E T      L
Sbjct: 305 PEMRAQLQEALDAVLSDPGIQQELAQLGENLAQLMPNNPYHREFSLSGDEELTLGEAMRL 364

Query: 622 HEVHIQIHQIESQ 634
            E   ++ ++E Q
Sbjct: 365 MERLREMEEVEDQ 377


>gi|40849922|gb|AAR95673.1| plectin 8 [Mus musculus]
          Length = 4543

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2243 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2302

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2303 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2362

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2363 RTLEAERQRQLEMSAEAERLKLRMVEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2422

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2423 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2477

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2478 QEQILQETQALQKSFLSEKDSLLQRERFIE 2507



 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1710 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1769

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1770 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1829

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1830 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1881

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1882 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1941

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1942 ELELGRIRSNAEDTMRSKEQAELEAARQR 1970



 Score = 40.6 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2203 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2262

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2263 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2322

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2323 KAEAELLQQQKELAQEQA 2340



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1654 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1713

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1714 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1772



 Score = 37.6 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1204 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1263

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1264 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1320

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1321 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1377

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1378 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1437

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1438 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1470


>gi|45383668|ref|NP_989559.1| myosin-3 [Gallus gallus]
 gi|9800486|gb|AAF99314.1|AF272033_1 fast myosin heavy chain isoform 2 [Gallus gallus]
          Length = 1944

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 84/277 (30%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  +L   +    +       +      ELE   K     ++D +      
Sbjct: 1356 EEEQEAKGELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1415

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +         +  + +          +    + +   
Sbjct: 1416 NAKCASLEKTKQRLQNEVEDLMIDVERANAACARLDKKQKNFDKILAEWKQKYEETQAEL 1475

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+  S L     E         
Sbjct: 1476 EASQKESRSLSTELFKMKNAYEESLDHLETLKRENKNLQQEISDLTEQIAEGGK------ 1529

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +A + +     +       R   L  +  +
Sbjct: 1530 -----------AIHELEKVKKQIEQEKSEIQAALEEAEASLEHEEGKILR---LQLELNQ 1575

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1576 VKSEIDRKIAEKDEEIDQLKRNHLRIVESMQSTLDAE 1612



 Score = 37.6 bits (85), Expect = 6.1,   Method: Composition-based stats.
 Identities = 25/268 (9%), Positives = 80/268 (29%), Gaps = 17/268 (6%)

Query: 376  VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             +    +D     + E       +    +E         I+ +       + +   L ++
Sbjct: 1574 NQVKSEIDRKIAEKDEEIDQLKRNHLRIVESMQSTLDAEIRSRNEALRLKKKMEGDLNEM 1633

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK-LSKKPSLREAALLLTLINH 494
              +    +       K     +     +Q  +  +L   + L ++ ++ E          
Sbjct: 1634 EIQLNHANRVAAEAQKNLRNTQGVLKDTQIHLDDALRTQEDLKEQVAMVERRA------- 1686

Query: 495  PAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
              +LQ + +EL          +K+    L       +    +       ++     + Q+
Sbjct: 1687 -NLLQAEIEELRAALEQTERSRKVAEQELMDASERVQLLHTQNTSLINTKKKLETDIAQI 1745

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKG 609
              ++ D    +   E                 K+ +     L R K+ +++ +  +  + 
Sbjct: 1746 QSEMEDTIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLDQTVKDLQLRL 1805

Query: 610  EAEKTAIL---ISILHEVHIQIHQIESQ 634
            +  +   L      + ++  ++ ++E +
Sbjct: 1806 DEAEQLALKGGKKQIQKLEARVRELEGE 1833


>gi|197100378|ref|NP_001124704.1| protein CASP [Pongo abelii]
 gi|55725454|emb|CAH89591.1| hypothetical protein [Pongo abelii]
          Length = 692

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 98/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 115 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 174

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 175 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 234

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 235 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLRLASQ 294

Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 295 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 354

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 355 QLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 398


>gi|313897928|ref|ZP_07831469.1| chaperone protein ClpB [Clostridium sp. HGF2]
 gi|312957463|gb|EFR39090.1| chaperone protein ClpB [Clostridium sp. HGF2]
          Length = 852

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/209 (9%), Positives = 69/209 (33%), Gaps = 5/209 (2%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI + +   R +++          +  +++    + +      + + A+L       
Sbjct: 316 YRQYIEKDAALERRFQRVMVQEPSVEDTISILRGLKDRFESYHGVKILDEAILAAATMSN 375

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK---- 551
             + +++     I   +     L   + S   E      + +  ++ E    +       
Sbjct: 376 RYITDRFLPDKAIDLIDEACATLRVEMESMPQELDELQRKIMQLQIEETALKKEEDKKAK 435

Query: 552 -QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            +L+    +     A  ++          +          L + K ++E+   +   +  
Sbjct: 436 ERLEDIRTELAQLQAEKDSLYTKWEDEKAELEESKDAKVRLEKAKLDLEQAQNEARYEDA 495

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
           A+     I  L ++  +    + ++A+I+
Sbjct: 496 AKLQYATIPHLEKLIREQSDKQKEDALIQ 524


>gi|291413034|ref|XP_002722776.1| PREDICTED: restin isoform 1 [Oryctolagus cuniculus]
          Length = 1423

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 44/389 (11%), Positives = 115/389 (29%), Gaps = 30/389 (7%)

Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315
               + + K+     S      +   DV++L ++ ++  ++S   A+ E ++     L  
Sbjct: 577 QAATEKLSKENESLKSKLDHANKENADVIALWKSKLETAIASHQQAMAELKVSFTKGLGT 636

Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375
                 +      +        +       +           D             E  +
Sbjct: 637 ESAEFAELKAQIEKVRLDYQHEIERLQSQQDSERSAHAKE-VDALRAKLLKVIKEKEDSL 695

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
                 +D    +       +T +   E E  +K           +         +L+  
Sbjct: 696 EALKSKLDRAEDQHL-VEMEDTLNRLQEAETKVKELEALRARCSEQTEVIDNFASQLKAT 754

Query: 436 FQKYI---------TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            +K +         +E     +  ++     +++  +  + + +           L+E  
Sbjct: 755 EEKLLDLDALRKASSEGKSEIQQLRQQLEAAEKQIKNLEIEKDAESGKASGIARELQEKE 814

Query: 487 L-LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
           L L TL  + + +    + L        EL+ L         E              +R 
Sbjct: 815 LKLTTLEENLSGVSRVKEALET------ELRVLKEKFADASEEAVSV----------QRS 858

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             E + +L ++     L S+  E    ++     +     +R   L + KE++E  IA++
Sbjct: 859 MQETVNKLHQKEEQFNLLSSELERLRENLTDMEAKFRERDEREEQLVKAKEKLENDIAEI 918

Query: 606 TA-KGEAEKTAILISILHEVHIQ-IHQIE 632
               G+       ++    +  + + +++
Sbjct: 919 MKMSGDNSSQLSRMNDELRLKERCVEELQ 947



 Score = 37.6 bits (85), Expect = 6.3,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
           + L+ L S L     +Q     E+   RL E      +K+L+         +   +    
Sbjct: 693 DSLEALKSKL-DRAEDQHLVEMEDTLNRLQEAETK--VKELEALRARCSEQTEVIDNFAS 749

Query: 573 DVRQGYQQALAL----------YKRFRLLSRQKEEIEKQIAQVTAKGEAE--KTAILISI 620
            ++   ++ L L              + L +Q E  EKQI  +  + +AE  K + +   
Sbjct: 750 QLKATEEKLLDLDALRKASSEGKSEIQQLRQQLEAAEKQIKNLEIEKDAESGKASGIARE 809

Query: 621 LHEVHIQIHQIES 633
           L E  +++  +E 
Sbjct: 810 LQEKELKLTTLEE 822


>gi|288574959|ref|ZP_06393316.1| ATP-dependent chaperone ClpB [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570700|gb|EFC92257.1| ATP-dependent chaperone ClpB [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 865

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 78/209 (37%), Gaps = 11/209 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI + +   R ++           +  +++    + ++     + ++A++ ++    
Sbjct: 323 YRRYIEKDAALERRFQPVIVDPPSVEDAISILRGLRERFQVHHGVRITDSAVVASVTLSD 382

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-------- 547
             + +++     I   +     L + + S   E      + +   + E            
Sbjct: 383 RYITDRFLPDKAIDLIDESCAMLRTEIDSMPSELDGVSRKVMRLEIEEAALKKEDDQASA 442

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK--QIAQV 605
           E LK+L R+++D    +A+  +     ++  Q   ++ +    + R+ EE E+   + + 
Sbjct: 443 ERLKELQRELQDLREEAASLRSRYEAEKERIQSVRSVREEIDRIGREIEEAERNYDLNRA 502

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQ 634
            A+ +  +   L   L E    + +    
Sbjct: 503 -AELKHGRLPELRKELAERERAMEESGGT 530


>gi|212545062|ref|XP_002152685.1| DNA repair protein Rad18, putative [Penicillium marneffei ATCC
           18224]
 gi|210065654|gb|EEA19748.1| DNA repair protein Rad18, putative [Penicillium marneffei ATCC
           18224]
          Length = 1143

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 89/261 (34%), Gaps = 23/261 (8%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
           P+  +      +  S ++P E+ +  +          D ++   Y   +++RL     + 
Sbjct: 238 PMNVLSQDMARQFLSSSSPAEKYKFFVKGVQLEQLDNDYRVIEGYIDQMKERL-----EV 292

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
             E     R  K+ A+ R +    +  ++  +   +     +  E        N   I  
Sbjct: 293 QREDLKVLRGNKEKAQRRLELSDQRNTLRQRIRNLRAQMAWAQVE--------NQERIRD 344

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQV 557
              +E+A +       +   + +F    E+     E   + L        +   +  + +
Sbjct: 345 RIQEEIAKLDGQIASAES-ATAIFDRKYEEAERELETATELLNSTKEALSKAQDE-SQVL 402

Query: 558 RDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           +DA         +I   ++   Q++  L      L +Q  +  K++A + A G+  +   
Sbjct: 403 KDANAQDMAEHHDIKAEQRRIDQSVKSLNSAIEALKQQIADENKRLADI-AGGDIARRQE 461

Query: 617 LISILH----EVHIQIHQIES 633
            ++       E   +++Q + 
Sbjct: 462 ELAHRRAEADEAEEKLNQHQG 482


>gi|149410361|ref|XP_001514734.1| PREDICTED: similar to ninein isoform 2 [Ornithorhynchus anatinus]
          Length = 2118

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 52/389 (13%), Positives = 124/389 (31%), Gaps = 35/389 (8%)

Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315
               K    ++++     +   E  +D         Q +V            + L  L  
Sbjct: 615 KEQHKRDLHNLKQELEDQVSRYEKQVDATKSICEREQELVKQQCEDKLHSVEKQLSGLKN 674

Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375
            I               +      C         ++     +   + +R   K   E  +
Sbjct: 675 EITKL----QGEAVVLKEEQQRADCRHTDEKNQLWMRFDEEK---AHLRELLKLEHEATL 727

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
              L  ++  + RE E    +      ++   ++        +  +    Q    +LQ L
Sbjct: 728 KSRLEELEEGFNREREGLIQSGVWAEEKMRSLVQAM------EGEKRELEQLYHKQLQSL 781

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +K++ E     R  ++  +       S+   +   ++ + S++ S+ EA  L    N  
Sbjct: 782 AEKHLLEKEELQRELREKHQ-------SELQEERRKMETEHSRRTSVIEAQFLA---NCQ 831

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQL 553
            +  +  + L+ +   +   Q+L       F E+    F  EEI Q   +     L + L
Sbjct: 832 RVTSKHEEALSQLEECHR--QELKDLAEQQFEEKSRWEFEKEEITQEWAKT-LEHLRETL 888

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           +R+   + + +   E    + ++     +        + ++ EE+     +  ++   E 
Sbjct: 889 EREKATSLVLTQEKELLEKEYKESLNSLV---LEKEQVQKELEELRNMAERQRSQLSNEI 945

Query: 614 TAILISILHEVHIQIHQIESQEAMIEGFG 642
             +  + + E+  +   +      IEG G
Sbjct: 946 LELQNNHVRELKDREQIMSQ----IEGTG 970


>gi|148678480|gb|EDL10427.1| mCG140437, isoform CRA_c [Mus musculus]
          Length = 2006

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 85/277 (30%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  ++   +    +       +      ELE   K     ++D +      
Sbjct: 1385 EEEQEAKAELQRAMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1444

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1445 NSKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQRNFDKVLAEWKQKYEETQAEL 1504

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E   +L  ++ +N  LQ+  S L     E         
Sbjct: 1505 EASQKESRSLSTELFKVKNAYEESLDQLETLKRENKNLQQEISDLTEQIAEGGKH----- 1559

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +A++ +     +       R   +  +  +
Sbjct: 1560 ------------IHELEKIKKQIDQEKSELQASLEEAEASLEHEEGKILR---IQLELNQ 1604

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1605 VKSEIDRKIAEKDEEIDQLKRNHLRVVESMQSTLDAE 1641



 Score = 37.6 bits (85), Expect = 6.2,   Method: Composition-based stats.
 Identities = 25/272 (9%), Positives = 83/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1598 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHLRVVESMQSTLDAEIRSRNDALRIKKKMEG 1657

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1658 DLNEM-EIQLNHANRQAAEAIRNLRNTQGMLKDTQLHLDDALRGQDDLKEQ------LAM 1710

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     ++Q + +EL          +++    L       +    +       ++     
Sbjct: 1711 VERRANLMQAEIEELRASLEQTERSRRVAEQELLDASERVQLLHTQNTSLINTKKKLETD 1770

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1771 ISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1830

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E++
Sbjct: 1831 QHRLDEAEQLALKGGKKQIQKLEARVRELENE 1862


>gi|25955618|gb|AAH40284.1| Tcerg1 protein [Mus musculus]
          Length = 1079

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 31/347 (8%), Positives = 104/347 (29%), Gaps = 42/347 (12%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++ L   +P ++              +   +   +     +         +D DS   
Sbjct: 563 EDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPIKAKKRKRDDNKDIDSEKE 622

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              +   +     ++  ++   K+  +          +  E  L   +   +       Y
Sbjct: 623 AAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPR-------Y 675

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                  L    +K + +     R  ++    +++   ++   +  + + K + + +  E
Sbjct: 676 L-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSE 730

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            A              +++ +  +     + + L++   +   +++    +   +++   
Sbjct: 731 FAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKEDSKTRGEKIKSD 779

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQALALYK---RFRL 590
            F  L                  E++             D+ + Y + +A      + + 
Sbjct: 780 FFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKE 839

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 840 LERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 881


>gi|50510383|dbj|BAD32177.1| mKIAA0139 protein [Mus musculus]
          Length = 857

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    +R A +     E + + V    + +   ++R     + 
Sbjct: 523 EQIRNQLT--AMSSVLAKALEVIRPAHILQEKEEQHQLAVNAYLKNSRKEHQRILARRQT 580

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 581 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 622


>gi|28416946|ref|NP_510880.2| myosin-XVIIIa isoform a [Homo sapiens]
 gi|33301318|sp|Q92614|MY18A_HUMAN RecName: Full=Myosin-XVIIIa; AltName: Full=Molecule associated with
            JAK3 N-terminus; Short=MAJN; AltName: Full=Myosin
            containing a PDZ domain
 gi|119571568|gb|EAW51183.1| hCG27198, isoform CRA_h [Homo sapiens]
 gi|168274483|dbj|BAG09661.1| myosin-XVIIIa [synthetic construct]
          Length = 2054

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 93/335 (27%), Gaps = 17/335 (5%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 1461 RRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 1520

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1521 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1580

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E  L   
Sbjct: 1581 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELEGKLATL 1639

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1640 SDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKNQLEESEFT- 1698

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1699 ----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1754

Query: 609  GEA---------EKTAILISILHEVHIQIHQIESQ 634
                         + +  ++ ++++  Q+ +   +
Sbjct: 1755 MNELMKKHKAAVAQASRDLAQINDLQAQLEEANKE 1789



 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 98/311 (31%), Gaps = 46/311 (14%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R        +   + L  +++  + E E++     ++       L+  +  + DQ  R  
Sbjct: 1593 RDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREK-----RELEGKLATLSDQVNRRD 1647

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +      RL++  ++     +               K    +L ++ L + + +   +++
Sbjct: 1648 FESE--KRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQL-KNQLEESEFTCAAAVK 1704

Query: 484  EAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY----------- 531
                +   I    + + +  +    +    + LQ+  + + +   E +            
Sbjct: 1705 ARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKA 1764

Query: 532  ---------FLPEEIHQRLCER-----GFGELLKQLDRQVRDAGLWSATT------EANI 571
                         ++  +L E         E L+ L  QV                EA I
Sbjct: 1765 AVAQASRDLAQINDLQAQLEEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKI 1824

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVH 625
             ++    +      KR   L+ + +E  +++ +           E E+   L   L +  
Sbjct: 1825 RELETRLEFERTQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTK 1884

Query: 626  IQIHQIESQEA 636
             ++ ++  +EA
Sbjct: 1885 EEMGELARKEA 1895


>gi|332074857|gb|EGI85329.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA41301]
          Length = 1179

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 4/143 (2%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E   + A +R D   L+ L   L       +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAADEASLRSDEVSLKNLQDELARLTERLEAIKSQGEQARIQEQGLSLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  +  + +G  QA      +R   ++ +K  +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEELDRLSEGEWQADKEKCQERLTTITSEKNNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQ 634
           E+   L   L +  +   +++ Q
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQ 821


>gi|326665506|ref|XP_691419.5| PREDICTED: hypothetical protein LOC562960 [Danio rerio]
          Length = 2900

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 29/330 (8%), Positives = 95/330 (28%), Gaps = 16/330 (4%)

Query: 314  SPRIVLCFDGDDPGLRAAYKAIDLVLC--HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371
               +VL   GD  G +  ++ ++        +     +   +     P+   +       
Sbjct: 723  MFTMVLFTRGDVLGNKTIHQCLEKAGPSLMNLIEACGHRFHVFNNNQPEERTQVSDLLEK 782

Query: 372  EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
               +V++        K   E        +   L   ++         K        + + 
Sbjct: 783  IDNMVKANGGSFYSCKMFREMEREKQEQQMKILMDRVRETEEE---MKKLEEEKDRMIEE 839

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
             +Q  +K         +   +      ++   +        + ++ +    +E       
Sbjct: 840  ERQNQEKDRKRREEELKREIREQEKHQREMREEMKKDRETFRHEIDEMRKDKE----KLQ 895

Query: 492  INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
              +          + + R ++++ +K     F    +Q      E+ + + E+   E  +
Sbjct: 896  CKYEKETDLLKNSIENERQNHDDYRKRREEEFKVREQQYKAQLTEMEREVQEKINKEGSE 955

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-----RLLSRQKEEIEKQIAQVT 606
            +L ++       +   ++   +     ++ +    R      + L  +K  ++  I + +
Sbjct: 956  KLKQERERMERETEKLQSTYKEEENKMKRMMEELNREREELMKNLDEEKRRLKTIIEEES 1015

Query: 607  AKGEAEK--TAILISILHEVHIQIHQIESQ 634
               + E+     L   + E      +   +
Sbjct: 1016 LNRDKERKRQEELKQEIREQEKHQRETRDE 1045


>gi|149410359|ref|XP_001514688.1| PREDICTED: similar to ninein isoform 1 [Ornithorhynchus anatinus]
          Length = 2127

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 52/389 (13%), Positives = 124/389 (31%), Gaps = 35/389 (8%)

Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315
               K    ++++     +   E  +D         Q +V            + L  L  
Sbjct: 615 KEQHKRDLHNLKQELEDQVSRYEKQVDATKSICEREQELVKQQCEDKLHSVEKQLSGLKN 674

Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375
            I               +      C         ++     +   + +R   K   E  +
Sbjct: 675 EITKL----QGEAVVLKEEQQRADCRHTDEKNQLWMRFDEEK---AHLRELLKLEHEATL 727

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
              L  ++  + RE E    +      ++   ++        +  +    Q    +LQ L
Sbjct: 728 KSRLEELEEGFNREREGLIQSGVWAEEKMRSLVQAM------EGEKRELEQLYHKQLQSL 781

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +K++ E     R  ++  +       S+   +   ++ + S++ S+ EA  L    N  
Sbjct: 782 AEKHLLEKEELQRELREKHQ-------SELQEERRKMETEHSRRTSVIEAQFLA---NCQ 831

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQL 553
            +  +  + L+ +   +   Q+L       F E+    F  EEI Q   +     L + L
Sbjct: 832 RVTSKHEEALSQLEECHR--QELKDLAEQQFEEKSRWEFEKEEITQEWAKT-LEHLRETL 888

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           +R+   + + +   E    + ++     +        + ++ EE+     +  ++   E 
Sbjct: 889 EREKATSLVLTQEKELLEKEYKESLNSLV---LEKEQVQKELEELRNMAERQRSQLSNEI 945

Query: 614 TAILISILHEVHIQIHQIESQEAMIEGFG 642
             +  + + E+  +   +      IEG G
Sbjct: 946 LELQNNHVRELKDREQIMSQ----IEGTG 970


>gi|116283747|gb|AAH33769.1| EIF3A protein [Homo sapiens]
          Length = 634

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    E+I  +L       +L +    ++ A +     E + + V    + +   ++R  
Sbjct: 512 QSMPSEQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRIL 569

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +  EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 570 ARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|99034809|ref|ZP_01314727.1| hypothetical protein Wendoof_01000447 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 483

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 53/186 (28%), Gaps = 16/186 (8%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           +S   +          E  L+  +I    I       +    + +   Q +++ +     
Sbjct: 11  RSVDKEICKLPHNLEAEQMLIGAMIRDNRICDAVEDTITAENFYDPLHQSIFTQISKTRK 70

Query: 528 EQKYFLPEEIHQRLCER------GFGELLKQLDRQVRDAGLWSATTEANIV--------D 573
                    +             G  E L +L  +   A    + T              
Sbjct: 71  HGIVANELSLKMFFENDQAFTECGGVEYLAKLAAKASIALDIYSLTRIIRDTYLRRCLIK 130

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-TAILISILHEVHIQIHQIE 632
           + Q        Y        Q E+   ++  +  K + EK    L S + +V  +I  ++
Sbjct: 131 LGQEIVGDSYNYDIENPAQAQIEQAMTKLFNLAVKKQGEKTYIKLASSIKDVVEKISTLK 190

Query: 633 SQ-EAM 637
           +  EA+
Sbjct: 191 NNPEAL 196


>gi|40849926|gb|AAR95675.1| plectin 10 [Mus musculus]
          Length = 4550

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2250 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2309

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2310 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2369

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2370 RTLEAERQRQLEMSAEAERLKLRMVEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2429

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2430 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2484

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2485 QEQILQETQALQKSFLSEKDSLLQRERFIE 2514



 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1717 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1776

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1777 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1836

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1837 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1888

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1889 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1948

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1949 ELELGRIRSNAEDTMRSKEQAELEAARQR 1977



 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2210 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2269

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2270 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2329

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2330 KAEAELLQQQKELAQEQA 2347



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1661 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1720

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1721 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1779



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1211 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1270

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1271 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1327

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1328 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1384

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1385 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1444

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1445 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1477


>gi|40675359|gb|AAH64926.1| EIF3A protein [Homo sapiens]
          Length = 636

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    E+I  +L       +L +    ++ A +     E + + V    + +   ++R  
Sbjct: 512 QSMPSEQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRIL 569

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +  EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 570 ARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|24659630|gb|AAH39185.1| Tcerg1 protein [Mus musculus]
          Length = 1057

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 31/347 (8%), Positives = 104/347 (29%), Gaps = 42/347 (12%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             ++ L   +P ++              +   +   +     +         +D DS   
Sbjct: 541 EDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPIKAKKRKRDDNKDIDSEKE 600

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              +   +     ++  ++   K+  +          +  E  L   +   +       Y
Sbjct: 601 AAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPR-------Y 653

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                  L    +K + +     R  ++    +++   ++   +  + + K + + +  E
Sbjct: 654 L-----LLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSE 708

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            A              +++ +  +     + + L++   +   +++    +   +++   
Sbjct: 709 FAA-------KHAKDSRFKAIEKM----KDREALFNEFVAAARKKEKEDSKTRGEKIKSD 757

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQALALYK---RFRL 590
            F  L                  E++             D+ + Y + +A      + + 
Sbjct: 758 FFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKE 817

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 818 LERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 859


>gi|12835914|dbj|BAB23415.1| unnamed protein product [Mus musculus]
          Length = 665

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|325995549|gb|ADZ50954.1| ClpB protein [Helicobacter pylori 2018]
 gi|325997145|gb|ADZ49353.1| ClpB protein [Helicobacter pylori 2017]
          Length = 856

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 92/280 (32%), Gaps = 26/280 (9%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R   K   + L+ + +  +D+              +   ++   +K   N I        
Sbjct: 220 RIVNKEVPKTLLNKRVVALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVI-------L 272

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +              + +  +    K          
Sbjct: 273 FIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYFEKD------MAL 326

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLW---SFLFSDFVEQKYFLPEEIHQR 540
           +      L+N P+ + E  Q L  ++        +    S L +       ++ +     
Sbjct: 327 QRRFQPILLNEPS-INEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPD 385

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL------YKRFRLLSRQ 594
                  E   QL  Q+       ++ + +I  + +  +QAL +      +KR + + ++
Sbjct: 386 KAIDLIDEGAAQLKMQMESEPAKLSSVKRSIQRL-EMEKQALEMENKESNHKRMQEILKE 444

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             +++++  Q+ A+ E EK   +   +  + +++  ++ +
Sbjct: 445 LSDLKEKKIQLEAQFENEK--EVFKEISRLKMEMESLKKE 482


>gi|307636958|gb|ADN79408.1| ClpB protein [Helicobacter pylori 908]
          Length = 856

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 92/280 (32%), Gaps = 26/280 (9%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R   K   + L+ + +  +D+              +   ++   +K   N I        
Sbjct: 220 RIVNKEVPKTLLNKRVVALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVI-------L 272

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +              + +  +    K          
Sbjct: 273 FIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYFEKD------MAL 326

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLW---SFLFSDFVEQKYFLPEEIHQR 540
           +      L+N P+ + E  Q L  ++        +    S L +       ++ +     
Sbjct: 327 QRRFQPILLNEPS-INEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPD 385

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL------YKRFRLLSRQ 594
                  E   QL  Q+       ++ + +I  + +  +QAL +      +KR + + ++
Sbjct: 386 KAIDLIDEGAAQLKMQMESEPAKLSSVKRSIQRL-EMEKQALEMENKESNHKRMQEILKE 444

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             +++++  Q+ A+ E EK   +   +  + +++  ++ +
Sbjct: 445 LSDLKEKKIQLEAQFENEK--EVFKEISRLKMEMESLKKE 482


>gi|307212505|gb|EFN88236.1| Nucleoprotein TPR [Harpegnathos saltator]
          Length = 2322

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 89/284 (31%), Gaps = 30/284 (10%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              +R+         +ER   E          K +       + + ++L+Q+   YI +  
Sbjct: 879  HLERKLMTNQERLKEERELNERLRAEMDQSKKTESESSQKIEELGNKLKQMAAHYIEKPL 938

Query: 445  GYGRYWKKNAR---------HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
                   K  +           + K  S++L  +     +        E  L      H 
Sbjct: 939  TGDENLVKRVKELETQLDACQTEIKSLSEQLKTARQQSQQYCDIAESAETQLRELTAEHT 998

Query: 496  AILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIHQRLCERGFG-ELLK 551
               +E  + L+D R +   LQK    L    +     K     E+ ++L       E L 
Sbjct: 999  KCKEELEKALSDSRLEIVSLQKKVKELNADLAKISNGKQETDSELREKLANAENKIEELD 1058

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            +L  ++        +      +  + Y + + L+     +  + +E  +Q  Q       
Sbjct: 1059 ELKGELELLKSDLKSIAIAAKEAEEKYAREMVLHSADLQVLAKLKEEAQQTQQQFNTLTQ 1118

Query: 612  EK-----------------TAILISILHEVHIQIHQIESQEAMI 638
            E+                    L+S + E   +I  +++Q A++
Sbjct: 1119 ERNIAIEALNTEKLSFKKMEQKLLSEISEYQKRIDDLDTQNALL 1162


>gi|291385643|ref|XP_002709430.1| PREDICTED: TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1
            [Oryctolagus cuniculus]
          Length = 1177

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 73/235 (31%), Gaps = 10/235 (4%)

Query: 405  EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
            E   K     + D  LR  Y   +   + Q+    ++           N     + GPS 
Sbjct: 921  EEAFKMLKFLMYDMGLRKQYRPDM--IILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSL 978

Query: 465  RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL----ADIRYDNNELQKLWS 520
                  L                 +  +    ++ +    L      +   +  L+ +  
Sbjct: 979  YAAPWFLTVFASQFPLGFVARVFDMIFLQGSEVIFKVALSLLGSHKPLILQHENLETIVD 1038

Query: 521  FLFSDFVEQKYFLPEEIHQRLCERGFGELLK--QLDRQVRDAGLWSATTEANIVDVRQGY 578
            F+ S          E+   ++ E    + L+  +++  V    L  ++  ++   + +  
Sbjct: 1039 FIKSTLPNLGLVQMEKTINQVFEMDIAKQLQAYEVEYHVLQEELIDSSPLSDNQRMDKLE 1098

Query: 579  QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQI 631
            +   +L K+   L  Q +    +I  + A  E   ++   L   L  + ++   +
Sbjct: 1099 KTNNSLRKQNLDLLEQLQVANSRIQSLEATVEQLLSSESRLKQALLALELERATL 1153


>gi|294657705|ref|XP_460006.2| DEHA2E16214p [Debaryomyces hansenii CBS767]
 gi|199432888|emb|CAG88259.2| DEHA2E16214p [Debaryomyces hansenii]
          Length = 472

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 56/146 (38%), Gaps = 14/146 (9%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           I+HP  +      LA+ +   ++ Q+   +  S   + K     EI+    +  F E + 
Sbjct: 142 IDHPLCIDCSNLLLANFKLKFDQNQREKEYYMSFLRKLKEKDSNEINNNELDSKFDESID 201

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
             ++                    +  Q+   L +    L +Q  +++ Q+ ++      
Sbjct: 202 GFEQLSS--------------QELEKLQKLKQLEEHKSELDKQLNDLKGQLNKLNENEMN 247

Query: 612 EKTAILISILHEVHIQIHQIESQEAM 637
           +   +  ++  ++  +++++E  +++
Sbjct: 248 DVLKLRNNLSLDLKSKLNKLEQSKSL 273


>gi|145539121|ref|XP_001455255.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423054|emb|CAK87858.1| unnamed protein product [Paramecium tetraurelia]
          Length = 227

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 61/162 (37%), Gaps = 15/162 (9%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           + ++       E  +L T +N     Q   Q+L  ++   +  + L     +    +  F
Sbjct: 49  RLQIQITEKDAEILMLHTQLNEQE--QYHQQQLEQVK---SHYEYLKESAIARLKSEMSF 103

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             + + + L E           +Q+    L       +         Q++  Y++     
Sbjct: 104 DADSMIKELRET----------KQMYQEILEMEAKRKSSYSQDDTRSQSINDYQKLYTEK 153

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           ++ +++  ++ ++ A  +++++  L+  +  +  Q+ ++  +
Sbjct: 154 QELQQLVDKLQKMKASQKSDQSEELVQEIQYLRDQLQKLTGE 195


>gi|40849908|gb|AAR95666.1| plectin 1 [Mus musculus]
          Length = 4572

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2272 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2331

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2332 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2391

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2392 RTLEAERQRQLEMSAEAERLKLRMVEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2451

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2452 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2506

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2507 QEQILQETQALQKSFLSEKDSLLQRERFIE 2536



 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1739 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1798

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1799 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1858

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1859 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1910

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1911 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1970

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1971 ELELGRIRSNAEDTMRSKEQAELEAARQR 1999



 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2232 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2291

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2292 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2351

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2352 KAEAELLQQQKELAQEQA 2369



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1683 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1742

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1743 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1801



 Score = 37.6 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1233 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1292

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1293 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1349

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1350 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1406

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1407 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1466

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1467 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1499


>gi|29421246|gb|AAO59285.1| kinesin [Botryotinia fuckeliana]
          Length = 1544

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 72/254 (28%), Gaps = 11/254 (4%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
                       +    I  K  I  + D+  +      ++  +  L  +     SG  R
Sbjct: 418 HLSETLNTVQYAQRARAIQSKPRIQQVSDESDKQAVIDRLKAEVAFLRDQIKHSESGGDR 477

Query: 449 YWKKNARHRDQKGPSQ-RLMQSSLVKGKLSKKPSLREAALLLTLIN--HPAILQEQYQEL 505
             K  +   +++   +  L    L   +     S R A L+  L       +   Q  E 
Sbjct: 478 RSKPTSERPERQNEREVELHNQLLDTQENYTALSQRHAKLIAELARARDEEVADNQAHEN 537

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
                    L+   S  F++ VEQ     E+  Q L           L           A
Sbjct: 538 TLGDSATERLK--RSNSFAEAVEQVVLEYEKTIQSLEHS-LSNTRSSLSNTETQLLEKEA 594

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
                    +Q   +   L  R         ++E ++   T+  +          + E+ 
Sbjct: 595 KCAYAETVNQQLQARLQKLADREANTESYLHDLETRLEGHTSGEDKNSAI-----VMELR 649

Query: 626 IQIHQIESQEAMIE 639
            +I +I   EA  E
Sbjct: 650 KEIARIRENEATSE 663


>gi|112363126|ref|NP_001036210.1| cytoplasmic dynein 1 heavy chain 1 [Danio rerio]
 gi|84627200|gb|ABC59849.1| dynein cytoplasmic 1 heavy chain 1 [Danio rerio]
          Length = 4643

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 32/311 (10%), Positives = 100/311 (32%), Gaps = 22/311 (7%)

Query: 324  DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
            +        K  +L    +     +  +  +  +  +   R     + E  +  +     
Sbjct: 3180 NHYANLFNEKRSELEEQQMHLNVGLRKIKETVDQ-VEELRRDLRIKSQELEVKNAAANDK 3238

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
            +    + +  +        E++  +      IKD++LR      ++  L Q+    I   
Sbjct: 3239 LKKMVKDQQEAEKKKVMSQEIQEAVYKQQEVIKDKQLR------VKQDLDQVEPAVIEAQ 3292

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
            +      K +             ++ +L    L       +   +  +I   + +     
Sbjct: 3293 NAVSSIKKHHLVEVRAMANPPAAVKLALESICLLLGEETNDWKKIRQVIIRDSFISSI-- 3350

Query: 504  ELADIRYDNNEL-QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
                + + + ++   +   +  +++    +  E++++       G ++K    Q+  A +
Sbjct: 3351 ----VNFVSEDMSDSIREKMKKNYMSNPSYNYEQVNRA--SLACGPMVKWAIAQLNYADM 3404

Query: 563  WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
                      ++++    A     +   + +   ++E  IA+       E+ A+LIS   
Sbjct: 3405 LKRVEPL-RNELQKLEDDAKDNKTKAEEVEQMIRDLEASIARY-----KEEYAVLISEAQ 3458

Query: 623  EVHIQIHQIES 633
             +   +  +E+
Sbjct: 3459 AIKADLAAVEA 3469


>gi|27923753|sp|P59242|CING_MOUSE RecName: Full=Cingulin
          Length = 1191

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 64/169 (37%), Gaps = 9/169 (5%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKY 531
           K ++ ++  LRE  L          +    QE+  +R     + ++L   +     +   
Sbjct: 471 KQRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAA 530

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              E   ++       EL ++L+    + G W +  + N  ++R   Q+ L L      +
Sbjct: 531 LEAE---RQKMSSLVRELQRELEETSEETGHWQSMFQKNKEELRATKQELLQLRMEKEEM 587

Query: 592 SRQKEE----IEKQIAQVTAK-GEAEKTAILISILHEVHIQIHQIESQE 635
             +  E    +++ + Q  A   +  +   L   L     ++ ++++++
Sbjct: 588 EEELGEKMEVLQRDLEQARASTRDTHQVEELKKELRRTQGELKELQAEQ 636



 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 99/291 (34%), Gaps = 25/291 (8%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y + A +++        D   + E  +   +   +  +            +D  
Sbjct: 861  QAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTA 920

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                  + +  RLQ L Q+   +        ++     ++    +  +       +L   
Sbjct: 921  RLD--KELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTD 978

Query: 480  PSLREA----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDF 526
               R       L   L+   +  Q+   +   +   N +L+ +L S           S  
Sbjct: 979  RVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQL 1038

Query: 527  VEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
              Q   L E +     E+       ++L+R+V++  +       ++ D +        L 
Sbjct: 1039 ESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQ------LT 1092

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
             R + L RQ +E E++I ++ +  +       +   HEV+ Q+  +I+S E
Sbjct: 1093 LRVKALKRQVDEAEEEIERLDSLRKKA--QRELEEQHEVNEQLQARIKSLE 1141


>gi|71660216|ref|XP_821826.1| antigenic protein [Trypanosoma cruzi strain CL Brener]
 gi|70887214|gb|EAN99975.1| antigenic protein, putative [Trypanosoma cruzi]
          Length = 2517

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 86/291 (29%), Gaps = 22/291 (7%)

Query: 365  CYGKTAFEKLIVESLPL-VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
                 A ++   +      +     E  +      +E        +     +   + +  
Sbjct: 1396 EEKLDALQRQNEQLQSQLKESRRGEEKLDALQRQNEELQSQLKESRRGEEKLDALQRQNE 1455

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              Q+     ++  +K         +   +    R  +     L + +       K+    
Sbjct: 1456 QLQSQLKESRRGEEKLDALQRQNEQLQSQLKESRRGEEKLDALQRQNEELQSQLKESRRG 1515

Query: 484  EAALLLTLINHPAILQEQ------YQELADIRYDNNELQKLW------SFLFSDFVEQKY 531
            E  L      +  +  +        ++L  ++  N +LQ                  Q  
Sbjct: 1516 EEKLDALQRQNEELRSQLKESRRGEEKLDALQRQNEQLQSQLKESRRGEEKLDALQRQNE 1575

Query: 532  FLPEEIHQRLCERGFGELL----KQLDRQVRDAGLWSATTEANI---VDVRQGYQQALAL 584
             L  ++ +        + L    ++L  Q++++       +A      ++R   +++   
Sbjct: 1576 QLQSQLKESRRGEEKLDALQRQNEELQSQLKESRHGEEKLDALQRQNEELRSQLKESRRG 1635

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             ++   L RQ EE++ Q+ +       EK   L     E+  Q+ +    E
Sbjct: 1636 EEKLDALQRQNEELQSQLKESRRG--EEKLDALQRQNEELQSQLKESRRGE 1684



 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 85/254 (33%), Gaps = 23/254 (9%)

Query: 395  FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
                ++   L+   +   + +K+ +       A++ + ++L  +      G  +      
Sbjct: 1033 CRGEEKLDALQRQNEELQSQLKESRRGEEKLDALQRQNEELQSQLKESRRGEEKLDALQR 1092

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            ++   +   +   +       L ++    ++ L           +   ++L  ++  N E
Sbjct: 1093 QNEQLQSQLKESRRGEEKLDALQRQNEQLQSQL--------RESRRGEEKLDALQRQNEE 1144

Query: 515  LQKLW------SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ----LDRQVRDAGLWS 564
            LQ                  Q   L  ++ +        + L++    L  Q++++    
Sbjct: 1145 LQSQLKESRRGEEKLDALQRQNEQLQSQLKESRRGEEKLDALQRQNEQLQSQLKESRRGE 1204

Query: 565  ATTEANI---VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
               +A      +++   +++    ++   L RQ EE++ Q+ +       EK   L    
Sbjct: 1205 EKLDALQRQNEELQSQLKESRRGEEKLDALQRQNEELQSQLKESRRG--EEKLDALQRQN 1262

Query: 622  HEVHIQIHQIESQE 635
             E+  Q+ +    E
Sbjct: 1263 EELQSQLKESRRGE 1276



 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 74/225 (32%), Gaps = 28/225 (12%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            ++L  L ++     S      +   +    +  +++L        +  +K    +     
Sbjct: 1157 EKLDALQRQNEQLQSQLKESRRGEEKLDALQRQNEQLQSQLKESRRGEEKLDALQR---- 1212

Query: 490  TLINHPAILQEQ------YQELADIRYDNNELQKLW------SFLFSDFVEQKYFLPEEI 537
                +  +  +        ++L  ++  N ELQ                  Q   L  ++
Sbjct: 1213 ---QNEELQSQLKESRRGEEKLDALQRQNEELQSQLKESRRGEEKLDALQRQNEELQSQL 1269

Query: 538  HQRLCERGFGELLKQ----LDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRL 590
             +        + L++    L  Q++++       +A      +++   +++    ++   
Sbjct: 1270 KESRRGEEKLDALQRQNEQLQSQLKESRRGEEKLDALQRQNEELQSQLKESRRGEEKLDA 1329

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            L RQ EE++ Q+ +       EK   L     E+  Q+ +    E
Sbjct: 1330 LQRQNEELQSQLKESRRG--EEKLDALQRQNEELQSQLKESRRGE 1372



 Score = 37.6 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 85/291 (29%), Gaps = 22/291 (7%)

Query: 365  CYGKTAFEKLIVESLPL-VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
                 A ++   E      +     E  +      ++        +     +   + +  
Sbjct: 1132 EEKLDALQRQNEELQSQLKESRRGEEKLDALQRQNEQLQSQLKESRRGEEKLDALQRQNE 1191

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              Q+     ++  +K             +    R  +     L + +       K+    
Sbjct: 1192 QLQSQLKESRRGEEKLDALQRQNEELQSQLKESRRGEEKLDALQRQNEELQSQLKESRRG 1251

Query: 484  EAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVEQKYFLP-----E 535
            E  L      +  +  +  +       +     + ++L S L      ++         E
Sbjct: 1252 EEKLDALQRQNEELQSQLKESRRGEEKLDALQRQNEQLQSQLKESRRGEEKLDALQRQNE 1311

Query: 536  EIHQRLCE--------RGFGELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALAL 584
            E+  +L E               ++L  Q++++       +A      +++   +++   
Sbjct: 1312 ELQSQLKESRRGEEKLDALQRQNEELQSQLKESRRGEEKLDALQRQNEELQSQLKESRRG 1371

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             ++   L RQ EE++ Q+ +       EK   L     ++  Q+ +    E
Sbjct: 1372 EEKLDALQRQNEELQSQLKESRRG--EEKLDALQRQNEQLQSQLKESRRGE 1420


>gi|71412310|ref|XP_808346.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70872532|gb|EAN86495.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 793

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 28/282 (9%), Positives = 84/282 (29%), Gaps = 26/282 (9%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                 +   I   +            + ++    +   +E   ++ +  +K++      
Sbjct: 303 RKRFEEYRNGIEREIEEERADLNAARASENWQAKKDVKVVEERYRSTLELLKNE------ 356

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +    +L Q  +    +  G   + ++  + +  +    R    SL +         RE
Sbjct: 357 -RESNKKLSQENELLRQQLEGMTTHMRETQKLQKAETSRLRREIESLTRRNEELLEMTRE 415

Query: 485 AALLLT----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             +        IN PA + +           N     + S + +    ++     E    
Sbjct: 416 QQIAALENSSKINSPAPVLQIT--------SNAWRPNVGSSVSTQRSCEEVLDFPEFRST 467

Query: 541 LCERGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-- 596
           +      +    +  + + R              +  +   +A    KR     ++++  
Sbjct: 468 VGSSMQQQQSNDIIWEAKQRRMAAEKERKRLEAEEKERKRLEAEKERKRLEAEEKERKRL 527

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEV---HIQIHQIESQE 635
           E EK+  ++ A+ +  +          +     +  ++E++E
Sbjct: 528 EAEKERKRLEAEEKERRRLEAEKERKRLEAEEKERRRLEAEE 569


>gi|71001994|ref|XP_755678.1| dynactin [Aspergillus fumigatus Af293]
 gi|66853316|gb|EAL93640.1| dynactin, putative [Aspergillus fumigatus Af293]
          Length = 1378

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 66/226 (29%), Gaps = 15/226 (6%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           +   L ++  K            +K       +    +     + K +   +P   E   
Sbjct: 328 VARELDEMKTKLKVMEKKRAEDREKLKTLEKLQSERDKFEA-IIQKLQAKYQPQQLEIGE 386

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           L   +       E+ + L        E+  L   +  +  +        +  R+ E    
Sbjct: 387 LRKKLKDTEAKLEEVERLQAEHESILEMAALDREMAEETADAFKHECAVLRARVEELELE 446

Query: 548 ELLK--------QLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-YKRFRLLSRQKEEI 598
             +         Q+      +       E     +R+   +   +  ++   L  Q +E+
Sbjct: 447 LEVLKEENEELGQVMTPEEKSSHGWLQMEKTNERLREALIRLRDMTQQQESELRDQIKEL 506

Query: 599 EKQIAQVTA-----KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           ++ +    A     +   EK  +  + + ++  Q+      E MIE
Sbjct: 507 QQDLEDYAAIKSQYEATKEKLLVSENNVEDLKQQLETALGAEEMIE 552


>gi|294954476|ref|XP_002788187.1| hypothetical protein Pmar_PMAR006880 [Perkinsus marinus ATCC 50983]
 gi|239903402|gb|EER19983.1| hypothetical protein Pmar_PMAR006880 [Perkinsus marinus ATCC 50983]
          Length = 887

 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 82/274 (29%), Gaps = 49/274 (17%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +  +     AF  L  +   L D+       N           +  + + C     D +
Sbjct: 166 CASSQTDSPEAFLTLEEKLRALEDVAAAASAGNDEDRHRRIEERMLRYKREC-----DNR 220

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           +R      ++            E +   R  ++ AR   ++   +R  +  LV+ +  ++
Sbjct: 221 VREEVEAQVQRIRSIELPNARLEAAAQLRAEQRTAREELEREAKEREARFKLVEQRTLER 280

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             L+E+ L    ++    L    +                                    
Sbjct: 281 LRLKESELDRRAVSSRETLLRDLE------------------------------------ 304

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            +   G  E  + L  +  +   W    E N  D+++  +       + R L +Q E+++
Sbjct: 305 -IERAGVREKARALAARENELAHWEKRIEGNRQDIQEREE-------KLRTLRQQFEDLK 356

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +  ++       +       L E   ++ ++ +
Sbjct: 357 NKEVELATLKIKAEMETDRRALIEQQNEVDKLRA 390


>gi|213416871|ref|ZP_03350015.1| hypothetical protein Salmonentericaenterica_02436 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 455

 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F     +     +  ++    +  +  +   +Q++L   +  K    R       + N P
Sbjct: 18  FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77

Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +   L+ Q   L D           + L   +     +      E   ++   R   + 
Sbjct: 78  KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137

Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598
           L QL +Q  DA       E         A +   +    QA +   +  +   +  ++  
Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197

Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +++A++ ++   +++  L + L  +  Q++ +  +EA
Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237


>gi|194388230|dbj|BAG65499.1| unnamed protein product [Homo sapiens]
          Length = 986

 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/214 (8%), Positives = 74/214 (34%), Gaps = 3/214 (1%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             ++   +F    +             +        +   + S +K +L    +  +  +
Sbjct: 343 FDNKFDDIFGSSFSRDPFNFNSQNGVNKDEKDHLIERLYREISGLKAQLENMKTESQRVV 402

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-HQRLCERGF 546
           L    +   +  +  ++    +   ++ + L + L     +++     +     +  +  
Sbjct: 403 LQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQ 462

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
               +    + + + L     +    +     +Q     +    L R+K+E+E  + +++
Sbjct: 463 ANEQRYSKLKEKYSELVQNHADLLRKNAEVT-KQVSMARQAQVDLEREKKELEDSLERIS 521

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +G+  KT   + +L  +  ++   + +  +++G
Sbjct: 522 DQGQR-KTQEQLEVLESLKQELATSQRELQVLQG 554


>gi|223934869|ref|ZP_03626788.1| ATP-dependent protease La [bacterium Ellin514]
 gi|223896322|gb|EEF62764.1| ATP-dependent protease La [bacterium Ellin514]
          Length = 833

 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/221 (9%), Positives = 65/221 (29%), Gaps = 24/221 (10%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            D   +   +  +   ++Q     +       R+  +          ++  +   ++  K
Sbjct: 97  PDDLYKIGVAANVLKLIRQPDGSAVIAVQAMRRFAIRKVVLTHPFIKAEVEVLWPIMPPK 156

Query: 476 LSKKPSLREAAL----LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
             K+       L    L  +   P + ++    +  +   +         +         
Sbjct: 157 EDKEFEAAVRNLRETALRLIKVTPDVPEQARAIIEGM--QDP------GQMADFLASNLN 208

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               +  Q L E    + ++ +  +V      +   +    DV   +  A    +R   L
Sbjct: 209 MEVPDKQQLLEELDVAKRVRAVQLRVSSQYEIAQLQQKLQQDVASQFTDA----QRRAYL 264

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             Q + I++++ +     +          + E+  ++ + +
Sbjct: 265 REQIKAIQRELGEEPEGADE--------QIEELRKELEEAQ 297


>gi|169343364|ref|ZP_02864368.1| conserved domain protein [Clostridium perfringens C str. JGS1495]
 gi|169298450|gb|EDS80536.1| conserved domain protein [Clostridium perfringens C str. JGS1495]
          Length = 433

 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 61/164 (37%), Gaps = 6/164 (3%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E A+L T+  +   + +   E+ +  + N + Q ++  +   + +   F    + ++L  
Sbjct: 12  EEAILGTVTANNKYMIKVIGEIEEKDFYNTKNQIIYRAISELYRKSIPFDLVVLSEKLSN 71

Query: 544 RGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL----YKRFRLLSRQKEE 597
                   L  +  +       +  +  NIV  +   ++ +            ++ + + 
Sbjct: 72  EIKSGAITLTDIAEKTSHVDYGTLLSHVNIVKEKSRERELVTACQMVISSEGNVNSKVDY 131

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           ++ ++ +V       K   +  +++    +I +  S +  I GF
Sbjct: 132 LQNKLLEVNQVSRKNKVMGIGDVMYTTLSEIEKAHSNKTGIRGF 175


>gi|39653934|gb|AAR29466.1| progerin [Homo sapiens]
 gi|55957499|emb|CAI15523.1| lamin A/C [Homo sapiens]
          Length = 614

 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ + ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|9910570|ref|NP_064322.1| polyamine-modulated factor 1-binding protein 1 [Mus musculus]
 gi|81869923|sp|Q9WVQ0|PMFBP_MOUSE RecName: Full=Polyamine-modulated factor 1-binding protein 1;
           Short=PMF-1-binding protein; AltName: Full=Sperm
           tail-associated protein
 gi|5525095|dbj|BAA82514.1| sperm tail associated protein [Mus musculus]
 gi|148679473|gb|EDL11420.1| polyamine modulated factor 1 binding protein 1 [Mus musculus]
 gi|187950983|gb|AAI38247.1| Polyamine modulated factor 1 binding protein 1 [Mus musculus]
 gi|187953859|gb|AAI38246.1| Polyamine modulated factor 1 binding protein 1 [Mus musculus]
          Length = 1022

 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 67/212 (31%), Gaps = 9/212 (4%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           L++     I +      + +   +   Q+    + +     K    K   L E      L
Sbjct: 374 LREETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELE--KNL 431

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGEL 549
           +     L+E+  EL  ++    EL      L            E +   + +      E 
Sbjct: 432 MQVQNSLREKEAELEKLQCTTKELDT---SLQEARQSTSKIDCEALRAEIQKLKDSLEEA 488

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            +QL    ++          +   +   +++      + +      ++++ Q+ ++  + 
Sbjct: 489 REQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKES 548

Query: 610 E--AEKTAILISILHEVHIQIHQIESQEAMIE 639
               E+       L E+  ++ + + + +  E
Sbjct: 549 SKIEEERKHNRQRLQELSSELSEGQRRLSNAE 580


>gi|322500952|emb|CBZ36028.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 762

 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 13/126 (10%)

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV--------DVRQGY 578
             +       + Q L +    +  K+L +++         T  +I         D+    
Sbjct: 561 KNEPRVDEAAMLQLLADEKVEQTRKKLKQEISKTIREEEKTRKDITQRASKAYHDLCDRL 620

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-----ES 633
           +Q     ++      +KEE E+Q      K   E+TA L S L  +  +  ++     ++
Sbjct: 621 RQETKRTQKEVADRERKEEQERQRELDKIKQAQEQTAELKSRLQSLKKENAELIQSKQDA 680

Query: 634 QEAMIE 639
            +A  E
Sbjct: 681 TQAAKE 686


>gi|319411488|emb|CBQ73532.1| related to SMC4-Stable Maintenance of Chromosomes [Sporisorium
           reilianum]
          Length = 1644

 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 37/355 (10%), Positives = 104/355 (29%), Gaps = 26/355 (7%)

Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353
            ++ +           L +    I+       P    A    +               ++
Sbjct: 416 SIAQMPPRAKNEHEEGLLEYLEDIIGTSCFKTPIEEQAKLVDE--ANEKRAEKLGRLKIV 473

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            + +D     +   +         +     +      E       D        ++    
Sbjct: 474 QKEKDALEAKKREAERFLRAQNELTRRQSALWQLYSLEA-----KDNIKVATDAIEKYTA 528

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +  +  ++  S+A  + L+  ++  + E     R  +K A+         R  +  +  
Sbjct: 529 RLAQEAEKHSGSKAEIEELEAGYKALVKEFDSIARGNEKVAK------ELARFEKEDVQL 582

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELAD-IRYDNNELQKLWSFLFSDFVEQKYF 532
            +  K    ++  L  ++ +      E     +D       E  +L        +E++  
Sbjct: 583 QEKRKHVESKKKKLAKSIADDRHAASEAKATASDSAHKIEKEQAELRK--LESSLEREEA 640

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             E+I   L  +   +  + ++ + R    W+A             ++   L  R   + 
Sbjct: 641 QLEKIRDSLKGKT-EKFSRAIEHKQRQLQPWTAKISDKSAAKNVAQEERDLLASRGAQVE 699

Query: 593 RQKEEIEKQI--AQVTAKGEAEKTAILISILHEV-------HIQIHQIESQEAMI 638
               E  + +   ++  + + E+   L     ++         Q+ +++ QEA++
Sbjct: 700 ASIAEAREALHNLELDNESKHEEVESLNQERRDLEKKIASCQKQLDEMKQQEAVL 754


>gi|293569903|ref|ZP_06680990.1| von Willebrand factor type A domain protein [Enterococcus faecium
           E1071]
 gi|291587651|gb|EFF19528.1| von Willebrand factor type A domain protein [Enterococcus faecium
           E1071]
          Length = 742

 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 82/265 (30%), Gaps = 20/265 (7%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           +          E+        ++     + +       K    +      + + ++ L +
Sbjct: 224 NRNYQGNRPLNESLRDRMQHAEKMDLPALEVMAERAMAKTMIQKQELLLKMAEIIRLLDE 283

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
                        +      +     Q L+QS   K          E A+L   ++   +
Sbjct: 284 TAKANAIKGVAGMRSYFYWANTYKQGQDLLQSIYPKVLYKLSTDSDELAILEQALSDSGL 343

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           L E    L   ++ + +         S+  + +    EE ++R       E+L +LD + 
Sbjct: 344 LLELQDILRKEKWGHPQ---------SEHTKGRTISAEEANERNITENAEEIL-RLDEKK 393

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +       E    +  +  +  +    +      +  +IE +  +    G+  +    
Sbjct: 394 SLSAEEPNEGEEKQEETIE--KNEIPPQMQ----KERSSDIEGKNQKEQQTGDDSQEMSA 447

Query: 618 I---SILHEVHIQIHQIESQEAMIE 639
               +   E+  Q+++ E+++ M E
Sbjct: 448 SDMEAHDKEIKKQLNK-EARQIMKE 471


>gi|226525264|gb|ACO70864.1| response regulator receiver protein [uncultured Verrucomicrobia
           bacterium]
          Length = 771

 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 2/126 (1%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           EL +    +     ++      +    +      + +  L  +   A   +    A I D
Sbjct: 240 ELDEQRKKILDLAEQKSQVAQSDSAHAMALAEARQQVLSLSEERDAARARANDQMAEIDD 299

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQI 631
           +R   ++      +  L   ++EE+++QIA++T+  ++  E+    ++       ++ Q+
Sbjct: 300 LRLQLEKVRDEVGQQALDIAEREELKRQIAEMTSNRDSHLEREKEFLAETISQQERLAQL 359

Query: 632 ESQEAM 637
             Q A 
Sbjct: 360 TEQLAA 365


>gi|195435930|ref|XP_002065931.1| GK20851 [Drosophila willistoni]
 gi|194162016|gb|EDW76917.1| GK20851 [Drosophila willistoni]
          Length = 766

 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 77/270 (28%), Gaps = 30/270 (11%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ +        E   +E  LK  IN +  +       +    +L++             
Sbjct: 233 RKYQRECEKLKTEMGHMESKLKYHINKLNMETEAKAVLE---RKLEEERNAPNKLEEKAN 289

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
              K            +   ++  +     ++    EA        H  +  +  +   +
Sbjct: 290 EKLKMEFEANSILLKHEITSKTEALDKLTREQQKQIEA--------HRELNHQLQEITTE 341

Query: 508 IRYDNNELQKLWSF--LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
             +   E+++L             +     ++  +L E         ++     +     
Sbjct: 342 HDFLLGEMRQLKEQHNAVELAYSDELLNSAKLRGQLEELQLLRTQNTINEAKLCSEEERV 401

Query: 566 TT-EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA-------------QVTAKGEA 611
              E+ + D     +Q     +    ++++  E+  Q+              +   K   
Sbjct: 402 KELESLVEDHESDLEQLQLKKQELLSINKEMSELIVQLQNDICLAEAKSQGLEAENKLLK 461

Query: 612 EKTAILISILHEVHIQIH---QIESQEAMI 638
           ++         E+  Q++    I+++E +I
Sbjct: 462 QEKLQYDQKYTELEQQLNAEFAIKNEERLI 491


>gi|189458807|ref|NP_001032800.2| cingulin [Mus musculus]
          Length = 1192

 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 64/169 (37%), Gaps = 9/169 (5%)

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKY 531
           K ++ ++  LRE  L          +    QE+  +R     + ++L   +     +   
Sbjct: 472 KQRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAA 531

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              E   ++       EL ++L+    + G W +  + N  ++R   Q+ L L      +
Sbjct: 532 LEAE---RQKMSSLVRELQRELEETSEETGHWQSMFQKNKEELRATKQELLQLRMEKEEM 588

Query: 592 SRQKEE----IEKQIAQVTAK-GEAEKTAILISILHEVHIQIHQIESQE 635
             +  E    +++ + Q  A   +  +   L   L     ++ ++++++
Sbjct: 589 EEELGEKMEVLQRDLEQARASTRDTHQVEELKKELRRTQGELKELQAEQ 637



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 99/291 (34%), Gaps = 25/291 (8%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
             + +  Y + A +++        D   + E  +   +   +  +            +D  
Sbjct: 862  QAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTA 921

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                  + +  RLQ L Q+   +        ++     ++    +  +       +L   
Sbjct: 922  RLD--KELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTD 979

Query: 480  PSLREA----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDF 526
               R       L   L+   +  Q+   +   +   N +L+ +L S           S  
Sbjct: 980  RVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQL 1039

Query: 527  VEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
              Q   L E +     E+       ++L+R+V++  +       ++ D +        L 
Sbjct: 1040 ESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQ------LT 1093

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
             R + L RQ +E E++I ++ +  +       +   HEV+ Q+  +I+S E
Sbjct: 1094 LRVKALKRQVDEAEEEIERLDSLRKKA--QRELEEQHEVNEQLQARIKSLE 1142


>gi|125854492|ref|XP_691143.2| PREDICTED: myosin-Vc [Danio rerio]
          Length = 1746

 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 67/217 (30%), Gaps = 8/217 (3%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            R  L    ++ + +          +               + +++ +L ++    E+ L 
Sbjct: 1106 RQLLGDATEQDLIQRLNEEASDNNDDGADLITAFDGMERAAKVMETQLREQKDAHESQLE 1165

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP-----EEIHQR--- 540
              +  +  + +E  Q  A  +  ++  Q +   +     E            E+++    
Sbjct: 1166 ALIFKNEHLSKENEQLQALFQEKSDINQSIGQEVTRLTAENMVIPELKQQVSELNRHKHE 1225

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            L  +   +  +   +    +       E      R+  ++     +R     RQ  E+++
Sbjct: 1226 LESQLQDQTAEMSAKLKELSSALHLAVEEEQSQRRRLQEELTESQRRREETDRQISELQE 1285

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            +  Q+      E  A     L    +    ++ +E +
Sbjct: 1286 ENQQLKKAQITESQAKNTLRLETSRLTAENMDFEEQL 1322


>gi|40849928|gb|AAR95676.1| plectin 11 [Mus musculus]
          Length = 4543

 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2243 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2302

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2303 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2362

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2363 RTLEAERQRQLEMSAEAERLKLRMVEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2422

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2423 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2477

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2478 QEQILQETQALQKSFLSEKDSLLQRERFIE 2507



 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1710 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1769

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1770 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1829

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1830 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1881

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1882 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1941

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1942 ELELGRIRSNAEDTMRSKEQAELEAARQR 1970



 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2203 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2262

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2263 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2322

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2323 KAEAELLQQQKELAQEQA 2340



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1654 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1713

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1714 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1772



 Score = 37.6 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1204 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1263

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1264 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1320

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1321 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1377

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1378 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1437

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1438 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1470


>gi|69244167|ref|ZP_00602703.1| von Willebrand factor, type A [Enterococcus faecium DO]
 gi|257880939|ref|ZP_05660592.1| von Willebrand factor domain-containing protein [Enterococcus
           faecium 1,231,502]
 gi|258616203|ref|ZP_05713973.1| hypothetical protein EfaeD_10865 [Enterococcus faecium DO]
 gi|294620791|ref|ZP_06699997.1| von Willebrand factor type A domain protein [Enterococcus faecium
           U0317]
 gi|68196624|gb|EAN11050.1| von Willebrand factor, type A [Enterococcus faecium DO]
 gi|257816597|gb|EEV43925.1| von Willebrand factor domain-containing protein [Enterococcus
           faecium 1,231,502]
 gi|291599648|gb|EFF30659.1| von Willebrand factor type A domain protein [Enterococcus faecium
           U0317]
          Length = 742

 Score = 41.4 bits (95), Expect = 0.42,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 82/265 (30%), Gaps = 20/265 (7%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           +          E+        ++     + +       K    +      + + ++ L +
Sbjct: 224 NRNYQGNRPLNESLRDRMQHAEKMDLPALEVMAERAMAKTMIQKQELLLKMAEIIRLLDE 283

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
                        +      +     Q L+QS   K          E A+L   ++   +
Sbjct: 284 TAKANAIKGVAGMRSYFYWANTYKQGQDLLQSIYPKVLYKLSTDSDELAILEQALSDSGL 343

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           L E    L   ++ + +         S+  + +    EE ++R       E+L +LD + 
Sbjct: 344 LLELQDILRKEKWGHPQ---------SEHTKGRTISAEEANERNITENAEEIL-RLDEKK 393

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +       E    +  +  +  +    +      +  +IE +  +    G+  +    
Sbjct: 394 SLSAEEPNEGEEKQEETIE--KNEIPPQMQ----KERSSDIEGKNQKEQQTGDDSQEMSA 447

Query: 618 I---SILHEVHIQIHQIESQEAMIE 639
               +   E+  Q+++ E+++ M E
Sbjct: 448 SDMEAHDKEIKKQLNK-EARQIMKE 471


>gi|322829701|gb|EFZ33003.1| hypothetical protein TCSYLVIO_635 [Trypanosoma cruzi]
          Length = 623

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/211 (10%), Positives = 74/211 (35%), Gaps = 15/211 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + + L +L ++   + +   +    + +  ++K  +Q+ M   L + K   K   ++
Sbjct: 422 LKNLEEELHKLRKELEQQKTLAKQQEDYHKQQIERKIKNQQEMSRQLQQSKEQVKQLQQQ 481

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                          +   +L  +      ++++ +   +     +    E I +    +
Sbjct: 482 EK------KRDKENHDYKTQLEQME---EHMEEIKNKNKTLQKSIEQKNQEIIEEHEHAK 532

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----RFRLLSRQKEEIEK 600
                L+++  ++    + +        ++R   +      +    +   L RQ EE+  
Sbjct: 533 DLQLHLEEMHAEIEQLRVENEQLRVENEELRAKDEDKTRALQEVSEQAEDLQRQLEELRA 592

Query: 601 QIAQVTAKGEAEK--TAILISILHEVHIQIH 629
           +  ++ A+GE +      +     ++  Q+ 
Sbjct: 593 ENEELRAEGEDKTRALQEVSEQAEDLQRQLE 623


>gi|320583686|gb|EFW97899.1| hypothetical protein HPODL_0529 [Pichia angusta DL-1]
          Length = 1260

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 54/126 (42%), Gaps = 7/126 (5%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA-TTEANIVDVRQGYQQA 581
                +++    ++  +R  +    +  +++ R+ ++  + +    +    + ++  ++ 
Sbjct: 261 LRGIDKEQDRKEQDRKERERQENERKERERVQRERKEQEIRAQQLRDQQRKEQQREMERV 320

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
               ++  LL RQK+EIE +  Q        +  + +  L +   ++ ++++  A+    
Sbjct: 321 EEEKRKKELLERQKQEIELRDRQQR------EQRLEMERLEQSRREMEKMQTLNALKSNS 374

Query: 642 GKMSGR 647
           G MS R
Sbjct: 375 GSMSPR 380


>gi|313246551|emb|CBY35447.1| unnamed protein product [Oikopleura dioica]
          Length = 1910

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 79/238 (33%), Gaps = 25/238 (10%)

Query: 413  NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
                 + LR  Y + +  +     Q+ +++ +     W+        +   +       +
Sbjct: 1319 AKHDHELLREAYDEEVEAK--NELQRQLSKSNSESSQWRTKYETDAVQRTEELEDAKKKL 1376

Query: 473  KGKLSKKPSLREAALLLT--LINHPAILQEQYQELA-DIRYDNNELQKL--WSFLFSDFV 527
             G+LS+     EAAL     L      LQ + ++L  ++   N     L      F   +
Sbjct: 1377 SGRLSEAEESVEAALAKCSSLEKSKGRLQSEIEDLTVELERANAAAGALEKKQRSFDKIL 1436

Query: 528  EQKYFLPEEIHQRLCER----------------GFGELLKQLDRQVRDAGLWSATTEANI 571
            E+     EEI+  L +                  + E +  L+   R+            
Sbjct: 1437 EENKIKQEEINAELEKAQKDSREASNEVFKMRNAYEEAVDCLESAKRENKQVQEEIADLT 1496

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHEVHIQ 627
              V +G +    L K  R +  ++ E+   + +  A  + E  KT  +   L ++  +
Sbjct: 1497 DQVAEGAKSISELEKAKRNIEVERNELAASLEETEAAVESEEAKTLRITVELQQIKSE 1554



 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 85/270 (31%), Gaps = 15/270 (5%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +     +   E    + L      + +           E   L+       + +K +  
Sbjct: 838  EYEEMKKELEIESKRRKQLEQEYSKFIQLKNRLISEFAGETDALQDAEDRYESLMKSKID 897

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                 + + +RL +  ++   + S   R  +   +   +         S + K K + + 
Sbjct: 898  LDGKIKELHERL-EDEEEINVDLSNKRRKLETECKELRKDIDDLEGTLSKVEKEKSTVEA 956

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS--DFVEQKYFLPEEIH 538
             +R              L      +A ++ +   LQ+            E K     +  
Sbjct: 957  DVRTKT---------DELSALEDTIAKLQKEKKALQEAHQQALDDLQAEEDKVNSLSKAK 1007

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             +L ++   +L + ++ + R              D+R   +  + L    + L  + ++ 
Sbjct: 1008 NKLEQQ-VDDLEQSVETEKRSRLDLERLKRKLEGDLRLAQETIMDLENDKQRLEEKLKKA 1066

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            E +  Q++ + E E    L++ L +   ++
Sbjct: 1067 EFEYNQLSTRFEDE--QALVAQLQKKIKEL 1094



 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 26/269 (9%), Positives = 88/269 (32%), Gaps = 29/269 (10%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
             ++        +      L   I  + +   +      +    +++ ++   E     + 
Sbjct: 797  IQSNWRAYTTLKDWEWQKLLFKIRPLLNTAEKKAEFDELLKEYEEMKKELEIESKRRKQL 856

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
             ++ ++    K    RL+     +    +    R  +L+ + I+    ++E ++ L D  
Sbjct: 857  EQEYSKFIQLKN---RLISEFAGETDALQDAEDRYESLMKSKIDLDGKIKELHERLEDEE 913

Query: 510  YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE----------------RGFGELLKQL 553
              N +L      L ++  E +    +++   L +                     L   +
Sbjct: 914  EINVDLSNKRRKLETECKELRK-DIDDLEGTLSKVEKEKSTVEADVRTKTDELSALEDTI 972

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEAE 612
             +  ++        +  + D++    +  +L K    L +Q +++E+ +  +  ++ + E
Sbjct: 973  AKLQKEKKALQEAHQQALDDLQAEEDKVNSLSKAKNKLEQQVDDLEQSVETEKRSRLDLE 1032

Query: 613  KTAI--------LISILHEVHIQIHQIES 633
            +               + ++     ++E 
Sbjct: 1033 RLKRKLEGDLRLAQETIMDLENDKQRLEE 1061


>gi|306831139|ref|ZP_07464300.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|304426705|gb|EFM29816.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
          Length = 639

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 18/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +     +       +    L +
Sbjct: 472 NHLDIDSKEVLEDALIDFDGTLLFVSHDRYFINRVATKVLEISEKGSTLYLGDYDYYLEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E +++L  +       +   +    D    YQ   A  K  R L+R+  EIE Q+ 
Sbjct: 532 KAELEEMERLKAEEAQEKTVAIVEKEPAND----YQAQKANQKELRKLTRRIAEIENQLE 587

Query: 604 QVTAKGEAEKTAILIS----ILHEVHIQIHQI-ESQEAMI 638
            + A+ EA   A+L +     L ++  ++  + E QE ++
Sbjct: 588 DIEAREEAINQAMLATNDAVELVDLQKELDDLTEQQETLM 627


>gi|296220283|ref|XP_002807480.1| PREDICTED: LOW QUALITY PROTEIN: disks large homolog 5-like
           [Callithrix jacchus]
          Length = 1736

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 27/331 (8%), Positives = 86/331 (25%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +L       +     
Sbjct: 317 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNADLSRLEQLGEENQRLLKQTEMLTQQRDTA 376

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R             +            ++        + +        
Sbjct: 377 IQLQHQCALSLRRFEAIHHELN-KATAQNKDLQWEMELLQSELTELRTTQVKTVKES-EK 434

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
               +D      Y   + +R Q + +    +        K  +   ++K  S+ +     
Sbjct: 435 YREERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAASEEMEALRQ 493

Query: 472 VK--GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +K    +    + +E  +L                         + + L   L     E 
Sbjct: 494 IKDTVTMDAGRANKEVEILR-----------------------KQCKALCQELKEALQEA 530

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    +   +++ + D             +  + ++ +  +      K+  
Sbjct: 531 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 587

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E++ ++   +   +  +   L++ 
Sbjct: 588 DVSRELKELKDRLE--SQLEKEARFRQLMAH 616


>gi|258545364|ref|ZP_05705598.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
 gi|258519397|gb|EEV88256.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
          Length = 1116

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 13/122 (10%)

Query: 519  WSFLFSDFVEQKYFLPEEI----------HQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
             + L +          ++I             L       L   +D   +          
Sbjct: 913  ATELLNQRTSDGTVSMQDIARAAQAAHSNITALDSTTLKNLNASIDAAKKKLEDLQQQAR 972

Query: 569  ANIVDVRQGYQQALALYKRFRLLSRQ--KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
                 +     Q      +   L +Q    E+E ++ +   +G AE+ A     L E+  
Sbjct: 973  DTAASLEAELAQLKGDDSKTAKLEQQRKLRELEGKLQEARIRGNAEEIAQYERAL-ELQR 1031

Query: 627  QI 628
            QI
Sbjct: 1032 QI 1033


>gi|154502368|ref|ZP_02039428.1| hypothetical protein RUMGNA_00181 [Ruminococcus gnavus ATCC 29149]
 gi|153796993|gb|EDN79413.1| hypothetical protein RUMGNA_00181 [Ruminococcus gnavus ATCC 29149]
          Length = 865

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 64/184 (34%), Gaps = 14/184 (7%)

Query: 478 KKPSLREAALLLTLINHPAI---------LQEQYQELADIRYDNNELQKLW----SFLFS 524
           +K +  E      ++  P++         L+E+Y+    ++  ++ L         ++  
Sbjct: 323 EKDAALERRFQPVMVEEPSVEDAISILRGLKERYEVFHGVKITDSALVAAATLSNRYISD 382

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
            F+  K     +    L +     +  +LD   R   +     E  +        +    
Sbjct: 383 RFLPDKAIDLVDEACALIKTELDSMPTELDEL-RRRVMQLEIEEEALKKEEDRLSRERLE 441

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
           + +  L   ++E   K++     K   E+   +   + +V+ +I + + +  + +     
Sbjct: 442 HLQEELAGLKEEYAGKKVQWENEKTSVERVQKVREEIEQVNKEIQKAQREYDLNKAAELQ 501

Query: 645 SGRL 648
            GRL
Sbjct: 502 YGRL 505


>gi|146093416|ref|XP_001466819.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134071183|emb|CAM69868.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 762

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 13/126 (10%)

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV--------DVRQGY 578
             +       + Q L +    +  K+L +++         T  +I         D+    
Sbjct: 561 KNEPRVDEAAMLQLLADEKVEQTRKKLKQEISKTIREEEKTRKDITQRASKAYHDLCDRL 620

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-----ES 633
           +Q     ++      +KEE E+Q      K   E+TA L S L  +  +  ++     ++
Sbjct: 621 RQETKRTQKEVADRERKEEQERQRELDKIKQAQEQTAELKSRLQSLKKENAELIQSKQDA 680

Query: 634 QEAMIE 639
            +A  E
Sbjct: 681 TQAAKE 686


>gi|145530824|ref|XP_001451184.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418828|emb|CAK83787.1| unnamed protein product [Paramecium tetraurelia]
          Length = 800

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 86/295 (29%), Gaps = 38/295 (12%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D   +       +    +         +   E+      +E  +    + N    I++Q 
Sbjct: 10  DDQGQGDNPDQDQGDNPDQDNEDYPDDQEYIEDEENPKDEEDQQNNELVNNLKLTIEEQG 69

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL--- 476
           L     Q +R     L +          R      + +     +++L+QS++ K KL   
Sbjct: 70  LEDN--QKLRKWKDLLTEHVQQVQKLRRRNNNLRGQLKKLGDKAEKLVQSNVRKQKLLEQ 127

Query: 477 ---SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF-----SDFVE 528
               K  +L E  +L           E     +   + N    ++   L           
Sbjct: 128 KLDPKHYNLAEKKILY----------EIKNGKSKQDFANKIDPRILDLLIAIDKMEQSNS 177

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-- 586
           Q     + +  R       E + +L  ++       A  +     ++   ++  A +K  
Sbjct: 178 QMRESIKALKDRNKNLEQTEEVNKLSNEIILVEKQIAEEDRLRRKMQVIMKEQEAEFKQQ 237

Query: 587 --------RFRLLSRQKEEIEKQIAQVTAKGEAE-----KTAILISILHEVHIQI 628
                   R   L  Q + ++  I +       E     +     + L +++ Q+
Sbjct: 238 QFDCDYEGRLNSLKDQIKTLKDSIREAQKVELHETRKEFELNNHFAELQKIYRQM 292


>gi|115693304|ref|XP_001187086.1| PREDICTED: similar to KIAA0445 protein [Strongylocentrotus
            purpuratus]
 gi|115738241|ref|XP_786339.2| PREDICTED: similar to KIAA0445 protein [Strongylocentrotus
            purpuratus]
          Length = 2435

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            Q  R    + +    + +    +         + +    ++     Q  ++    + +  
Sbjct: 1379 QTERNQLVEKLNSSQRDMANASMEMDRIKREAFTRAETDKEAIRDVQDELKELRARFEEG 1438

Query: 478  KKPSLREAALLLTLINHPA-----ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
                 R+A  L   I         +L+E  +    ++        +   L     + +  
Sbjct: 1439 TNVRERQAKDLSNQIKDLQKVKEALLREVNELKTQLKMAEESRDGVRRELIEAHRKIREG 1498

Query: 533  LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                  + +  +   EL +Q++ +VR+    +   E     V++     + L +     +
Sbjct: 1499 DEG---REIQRKENMELKRQMNDEVREKDAINRANEELRQKVKKVETDRIQLNRNVEERT 1555

Query: 593  RQKEEIEKQIAQVTAKG--------EAEKTA-ILISILHEVHIQIHQIESQEA 636
            ++   +E+    +  +         E EK+       L E+  Q+  +++ +A
Sbjct: 1556 QKIAVLEESKTAIQKEAGDLRASLREVEKSRLEARRELQELRRQVKTLDTDKA 1608



 Score = 37.9 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 24/214 (11%), Positives = 80/214 (37%), Gaps = 22/214 (10%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
               +  +   L ++ +       R  +   R   +K    +     +V+   S++ +  +
Sbjct: 850  LSQLSRQKNSLAEELLQTRRDVERQIEAVTRIAKEKEELTKEKAELIVQLTASERENRAQ 909

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            A ++  +      L+                + L+ +     + +      ++   L E+
Sbjct: 910  AEVIAAMNTDKESLE----------------RTLYEY--QQSLAKLEAKRTQLESELQEQ 951

Query: 545  GF--GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            G     +  +L RQ ++  +     + ++  + Q   Q     +    L ++++  ++ +
Sbjct: 952  GVSKEGVTVELARQRKEMEIEMTRYQKDLELLNQRMVQQERDTQ--LALKQRQQAHDEDV 1009

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             ++  +  +E  A L     E+ ++++++ ++EA
Sbjct: 1010 ERLNRERVSESLARLEVQRAELEVELNRLRTEEA 1043


>gi|2980673|emb|CAA05796.1| beta-dystrobrevin [Mus musculus]
 gi|3702159|emb|CAA09038.1| beta-dystrobrevin [Mus musculus]
          Length = 615

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 54/180 (30%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +        E AL+ + +             + +   + E + +  +   
Sbjct: 355 PTPTKRLQYSQDMPNLLADEHALIASYVARLQHCTRVLDSPSRL---DEEHRLIARYAAR 411

Query: 525 DFVEQKYFLP---EEIHQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E         +        +   +L+ +L+ + R+            E       + 
Sbjct: 412 LAAEAGNMTRPPTDASFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQAFQPTPEK 471

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 472 AQQNPMLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEGLMKLLKE-EEQKQAAQAT 529


>gi|325969543|ref|YP_004245735.1| SMC domain-containing protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708746|gb|ADY02233.1| SMC domain-containing protein [Vulcanisaeta moutnovskia 768-28]
          Length = 827

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 86/250 (34%), Gaps = 20/250 (8%)

Query: 402 AELEIHLKNCINHIKDQKLRY-YYSQAIRDRLQQLFQKYITEHSG-YGRYWKKNARHRDQ 459
            E   +    +  +KD+ +    Y   IR+ L+   +           R  ++  R R+ 
Sbjct: 325 TEKVYNAFEGLARLKDKFIEDKEYLSNIRNDLELQSESLKASLKELESRISQEEPRVREY 384

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAA-----LLLTLINHPAILQEQYQE---LADIRYD 511
           K    +  +   ++  + +     E          +L+N    +   ++E   + +    
Sbjct: 385 KALVNKYGEPVKIRRDVEEFRRRLERLSVEEGFRSSLLNVLQYILSNHEERCPVCNKSLS 444

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
             + + +   +  +    +    E++  +L E     +L  ++  +     + AT E + 
Sbjct: 445 EEDYENIKRRI-EELSRSRNDEIEDMKNKLNE--LERVLTNMETLLPIVNDYEATIERSR 501

Query: 572 V---DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA-EKTAILISILHE---V 624
                +     +   + K  R + R+ + + + + +  A+ +  +K    +    E   +
Sbjct: 502 DIRSRLETVLSKLETIEKSIRDIDRRIQTLTRFVDEFRAEVDEIDKEISYLRRYRELNSL 561

Query: 625 HIQIHQIESQ 634
             Q  ++  Q
Sbjct: 562 RRQEEELRQQ 571


>gi|242239626|ref|YP_002987807.1| cell division protein MukB [Dickeya dadantii Ech703]
 gi|242131683|gb|ACS85985.1| chromosome segregation and condensation protein MukB domain protein
           [Dickeya dadantii Ech703]
          Length = 1477

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 68/213 (31%), Gaps = 13/213 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              ++ +L    Q    + +   +Y +        +   Q    ++    +       +E
Sbjct: 392 VDELKSQLADYQQALDVQQTRAIQYNQAQQALERARSLCQLPALTADNAEQWLDNFRAKE 451

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL-PEEIHQRLCE 543
             +   L+       E  Q+L+     N++ ++ +  +                 + L +
Sbjct: 452 QEITELLL-------EMEQKLSVADAANSQFEQAYQLVCQIAGAVSRNDAWSTARELLRD 504

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL---LSRQKEEIEK 600
                 L +  + +R      A       +V++ +Q+      +      L   + E+E 
Sbjct: 505 SASQRYLAEQVQPLRLRLSELAQRLREQQEVQRQFQEFAKRCGQTYEPEDLEALQAELEA 564

Query: 601 QIAQVTA--KGEAEKTAILISILHEVHIQIHQI 631
           +I  ++       E+   L   L +V  +I ++
Sbjct: 565 RIEDLSERVAAAGEQRLALRQELEQVQQRIREL 597


>gi|156546653|ref|XP_001603493.1| PREDICTED: similar to RHO kinase, putative [Nasonia vitripennis]
          Length = 1419

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 81/243 (33%), Gaps = 33/243 (13%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + I+ RLQ+L  ++  E         +  + + ++     L      +     +   RE 
Sbjct: 789  RQIQQRLQKLEGEHRQESEKVKALQGQIEQEQQKRNV---LQSDLAQQSSEVSRLKAREH 845

Query: 486  ALLLTLINHPAILQEQYQELADIR-------YDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             L+  +       +   +EL  ++           ELQ+      + F        +E+ 
Sbjct: 846  QLVGEVTQLREAKRNIEEELHHLKTQRNVDQLQTKELQEQLEA-EAYFSTLYKTQAQELR 904

Query: 539  QRLCERG-FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ--- 594
            + L E+    + L++    +      S     +    R   ++ +A  ++ R +      
Sbjct: 905  EELDEKTRLQQELEEERSSLVHQLQLSLARGDSEALARSIAEETVADLEKERTMKELEYK 964

Query: 595  ------------KEEIEKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA 636
                        K+++  ++ +  A+ +        +   L   L E+  Q+++ +    
Sbjct: 965  DSTSKHHQELNAKDQLINRLKESEAEAKKNCEQYTKEKEELTKRLKEMQEQLNKAQFNAD 1024

Query: 637  MIE 639
             IE
Sbjct: 1025 EIE 1027


>gi|149724128|ref|XP_001504248.1| PREDICTED: myosin XVIIIA isoform 3 [Equus caballus]
          Length = 1581

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 94/335 (28%), Gaps = 17/335 (5%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 1003 RRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 1062

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1063 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1122

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E+ L   
Sbjct: 1123 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELESKLTTL 1181

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1182 SDQVNQRDFESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQLKNQLEESEFT- 1240

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1241 ----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1296

Query: 609  GEA---------EKTAILISILHEVHIQIHQIESQ 634
                         + +  ++ ++++  Q+ +   +
Sbjct: 1297 MNELMKKHKAAVAQASRDLAQMNDLQAQLEEANKE 1331



 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1321 LQAQLEEANKEKQELQEKLQT--LQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFER 1377

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1378 TQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1437



 Score = 37.2 bits (84), Expect = 8.9,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 94/304 (30%), Gaps = 34/304 (11%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             +      ++  VD   KR  +        E+       +   +   D        Q ++
Sbjct: 912  EWRLKYERAVREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADSDESQRALQQLK 971

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNA---RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             + Q+L  +             +N    + + +             + KL ++   RE  
Sbjct: 972  KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEEAQREKLQREKLQREKD 1031

Query: 487  LLLT-------LINHPAI-----------LQEQYQELADIRYDNNE-LQKLWSFLFSDFV 527
            +LL         +    +           L+ + Q+++     +   L K+   L     
Sbjct: 1032 MLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEA 1091

Query: 528  ----EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ------- 576
                +++    +    ++ E+    L  +++R  +       + +  + + RQ       
Sbjct: 1092 KVKDQEEELDEQAGTIQMLEQAKLRLEMEMERMRQTHSKEMESRDEEVEEARQSCQKKLK 1151

Query: 577  -GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                Q    Y+  + + R+K E+E ++  ++ +           +  ++      +   +
Sbjct: 1152 QMEVQLEEEYEDKQKVLREKRELESKLTTLSDQVNQRDFESEKRLRKDLKRTKALLADAQ 1211

Query: 636  AMIE 639
             M++
Sbjct: 1212 IMLD 1215


>gi|148690794|gb|EDL22741.1| myosin, heavy polypeptide 14, isoform CRA_b [Mus musculus]
          Length = 1994

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 71/252 (28%), Gaps = 20/252 (7%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            RE ++      + R   E          + ++     ++ +  RL +  +          
Sbjct: 1379 RELQSTQAQLSEWRRRQEEEAAVLEAGEEARRRAAREAETLTQRLAEKTEAVERLERARR 1438

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            R  ++        G  ++L+ +   K +   +    E A +L  +     ++ + +E   
Sbjct: 1439 RLQQELDDATVDLGQQKQLLSTLEKKQRKFDQLLAEEKAAVLRAVEDRERIEAEGREREA 1498

Query: 508  IRYD---------------NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                                 + + L + L +    +              +   +    
Sbjct: 1499 RALSLTRALEEEQEAREELERQNRALRAELEALLSSKDDVGKNVHELERARKAAEQAASD 1558

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQ-----QALALYKRFRLLSRQKEEIEKQIAQVTA 607
            L  QV +        E   + +    Q         L  R      ++ ++ KQ+     
Sbjct: 1559 LRTQVTELEDELTAAEDAKLRLEVTVQALKAQHERDLQGRDDAGEERRRQLAKQLRDAEV 1618

Query: 608  KGEAEKTAILIS 619
            + + E+    ++
Sbjct: 1619 ERDEERKQRALA 1630



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 84/271 (30%), Gaps = 7/271 (2%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQAI 428
             + +L ++  PL+ +  + E          +  EL+      +  ++ +  +       +
Sbjct: 848  QWWRLFIKVKPLLQVTRQDEVLQARAQELQKVQELQQQSAREVGELQGRVAQLEEERTRL 907

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             ++L+   +          R   +           +  +       +  +    R    +
Sbjct: 908  AEQLRAEAELCSEAEETRARLAARKQELELVVTELEARVGEEEECSRQLQSEKKRLQQHI 967

Query: 489  LTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              L +H    +   Q+L   +      ++K    L     +      E          F 
Sbjct: 968  QELESHLEAEEGARQKLQLEKVTTEAKMKKFEEDLLLLEDQNSKLSKERRLLEERLAEFS 1027

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE----EIEKQIA 603
                + + +V+         EA I D+    ++     +    L R+ +    E+++Q+ 
Sbjct: 1028 SQAAEEEEKVKSLNKLRLKYEATISDMEDRLKKEEKGRQELEKLKRRLDGESSELQEQMV 1087

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +   + E E  A L     E+   + + E +
Sbjct: 1088 EQKQRAE-ELLAQLGRKEDELQAALLRAEEE 1117


>gi|114550716|ref|XP_513743.2| PREDICTED: similar to KIAA0562 protein isoform 4 [Pan troglodytes]
          Length = 862

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 35/132 (26%), Gaps = 5/132 (3%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
               + +         L   ++      P        +  +   L  L   +      + 
Sbjct: 153 DPADFSDESNTASREKLIDHYLGHNSEDPALEGTYARKSDYISPLDDLAFDMYQDPEVAQ 212

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILISILH 622
                    R+  Q+    Y +   L +   +++K   ++ +   +           +  
Sbjct: 213 IIRKLDERKREAVQKERYDYAKK--LKQAIADLQKVGERLGRYEVEKRCAVEKEDYDLAK 270

Query: 623 EVHIQIHQIESQ 634
           E   Q+ Q  ++
Sbjct: 271 EKKQQMEQYRAE 282


>gi|159900504|ref|YP_001546751.1| ATPase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893543|gb|ABX06623.1| ATPase AAA-2 domain protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 1027

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 27/252 (10%), Positives = 69/252 (27%), Gaps = 14/252 (5%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
           P            +  +  D R      ++      ++  +R      + D +  +  K+
Sbjct: 544 PEFINRLDGVIFFKPLSQSDMRKIAAREMRKLFE--REGLVRRNVQVELDDAVLDILLKH 601

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--I 497
                   RY K+          +  L+        L +    RE      + N     +
Sbjct: 602 GYSIRYGARYLKRQIEKMVTYPLASALLTRPEQTNGLLRLYVAREQIKASWVANDDDEPL 661

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           L    ++   +     E  +    L +            + ++L      E   +L  ++
Sbjct: 662 LPSPEEQALQLPQTIEEAAQFIEQLHNRLK--------HLIKQLNVVEARERQTELMDEM 713

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
                W    +A    +            R   L R  ++ ++ + ++  + E      L
Sbjct: 714 SSPSFWDDHEQAQF--LLTELSNVARRVGRCDDLRRLYDDADQLLQRIRERNERRLFPEL 771

Query: 618 ISILHEVHIQIH 629
           + +   +   + 
Sbjct: 772 MRMAKRLERDLR 783


>gi|40849910|gb|AAR95667.1| plectin 2 [Mus musculus]
          Length = 4534

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2234 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2293

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2294 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2353

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2354 RTLEAERQRQLEMSAEAERLKLRMVEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2413

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2414 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2468

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2469 QEQILQETQALQKSFLSEKDSLLQRERFIE 2498



 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1701 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1760

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1761 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1820

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1821 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1872

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1873 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1932

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1933 ELELGRIRSNAEDTMRSKEQAELEAARQR 1961



 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2194 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2253

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2254 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2313

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2314 KAEAELLQQQKELAQEQA 2331



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1645 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1704

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1705 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1763



 Score = 37.2 bits (84), Expect = 7.9,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1195 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1254

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1255 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1311

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1312 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1368

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1369 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1428

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1429 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1461


>gi|40849914|gb|AAR95669.1| plectin 4 [Mus musculus]
 gi|40849916|gb|AAR95670.1| plectin 5 [Mus musculus]
 gi|40849924|gb|AAR95674.1| plectin 9 [Mus musculus]
          Length = 4449

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2149 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2208

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2209 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2268

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2269 RTLEAERQRQLEMSAEAERLKLRMVEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2328

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2329 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2383

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2384 QEQILQETQALQKSFLSEKDSLLQRERFIE 2413



 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1616 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1675

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1676 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1735

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1736 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1787

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1788 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1847

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1848 ELELGRIRSNAEDTMRSKEQAELEAARQR 1876



 Score = 40.3 bits (92), Expect = 0.94,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2109 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2168

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2169 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2228

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2229 KAEAELLQQQKELAQEQA 2246



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1560 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1619

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1620 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1678



 Score = 37.2 bits (84), Expect = 7.9,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1110 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1169

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1170 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1226

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1227 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1283

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1284 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1343

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1344 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1376


>gi|40849912|gb|AAR95668.1| plectin 3 [Mus musculus]
          Length = 4521

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2221 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2280

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2281 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2340

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2341 RTLEAERQRQLEMSAEAERLKLRMVEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2400

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2401 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2455

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2456 QEQILQETQALQKSFLSEKDSLLQRERFIE 2485



 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1688 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1747

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1748 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1807

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1808 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1859

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1860 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1919

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1920 ELELGRIRSNAEDTMRSKEQAELEAARQR 1948



 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2181 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2240

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2241 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2300

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2301 KAEAELLQQQKELAQEQA 2318



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1632 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1691

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1692 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1750



 Score = 37.2 bits (84), Expect = 7.9,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1182 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1241

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1242 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1298

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1299 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1355

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1356 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1415

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1416 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1448


>gi|40849920|gb|AAR95672.1| plectin 7 [Mus musculus]
          Length = 4511

 Score = 41.4 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2211 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2270

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2271 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2330

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2331 RTLEAERQRQLEMSAEAERLKLRMVEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2390

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2391 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2445

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2446 QEQILQETQALQKSFLSEKDSLLQRERFIE 2475



 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1678 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1737

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1738 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1797

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1798 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1849

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1850 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1909

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1910 ELELGRIRSNAEDTMRSKEQAELEAARQR 1938



 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2171 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2230

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2231 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2290

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2291 KAEAELLQQQKELAQEQA 2308



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1622 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1681

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1682 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1740



 Score = 37.2 bits (84), Expect = 8.0,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1172 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1231

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1232 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1288

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1289 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1345

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1346 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1405

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1406 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1438


>gi|296201252|ref|XP_002747955.1| PREDICTED: myosin-1-like [Callithrix jacchus]
          Length = 1938

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQSTLDAEIRSRNDAIRLKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1624 DLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQIHLDDAL-----RGQEDLKEQ--LAM 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 ISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828


>gi|282848887|ref|ZP_06258277.1| hypothetical protein HMPREF1035_1396 [Veillonella parvula ATCC 17745]
 gi|282581392|gb|EFB86785.1| hypothetical protein HMPREF1035_1396 [Veillonella parvula ATCC 17745]
          Length = 2875

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 64/567 (11%), Positives = 139/567 (24%), Gaps = 35/567 (6%)

Query: 87   ESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDE 146
            E+V +        L     K ++ E+ + +   +  V TD +    K   D +  Y    
Sbjct: 1364 EAVYK---KFRYDLYSQYEKEKQLEREREE-KAISNVKTDVYGALEKTNIDGKQLYSFLS 1419

Query: 147  RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRL 206
              + +                     +  KG          +  DG+     Y  F ++ 
Sbjct: 1420 HALGNDEHFNLHNVKNAKKASEFLNSIGIKG----------IYYDGEQDGRCYVVFDDKA 1469

Query: 207  IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDV 266
            I  I      +             ++   + +   F        F    N  +     + 
Sbjct: 1470 IQVIEKYNQSINGMTQINSPTDRLIQIFKTADRSTFLHEMGHVFFDDIKNLAEMENAPEQ 1529

Query: 267  RRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDP 326
                 + +     + D             +    A           L     +       
Sbjct: 1530 LVTDWNKLKEWSDWDDTQGANNTKAHEKFARGWEAYLREGKAPTKGLQRVFRMFSKWLTR 1589

Query: 327  GLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLW 386
              RA  +   L    +        +      D       Y K    +    S     +  
Sbjct: 1590 IYRAVTRLGGLPPKEIQ-DIMARMIATQEDID------AYTKEQALEQFESSKLFKQLDE 1642

Query: 387  KRETENRSFNTPDERAELEIHLKNCINHIKD------QKLRYYYSQAIRDRLQQLFQKYI 440
              + + +S          E  +K  +  ++          +      I  RL + +  Y 
Sbjct: 1643 AEQAKVQSHIADVGEMAKERVMKRYMKELESRPIKEWNDEKDSIQADIEKRLMEQYPIYK 1702

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                         A  R          +        ++  +    +   T I    I + 
Sbjct: 1703 DHQRYNAFGKNALANTRYSTLKELEAAEREQTGFTFNEAVNQAMESAEQTFIEDNHIGKS 1762

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE---EIHQRLCE-RGFGELLKQLDRQ 556
              +   +    ++   KL          Q         E+  +L       E ++     
Sbjct: 1763 NIEIAEEWILSSDGQMKLTEEEAKIIKSQTNRDLAKNWELLDKLNRLDPNSETIESDLEI 1822

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE---K 613
            +                V +          +      + +E +K++ + T+K +AE   +
Sbjct: 1823 IEKELTKEQKLRKEKAKVDKELGSVSKELDKANDEIERLKEQQKELQEQTSKNQAELKDE 1882

Query: 614  TAILISILHEVHIQIHQ-IESQEAMIE 639
               L   L  V  ++ + IE +E + E
Sbjct: 1883 KNELSKRLTIVTNRLDRIIEQKERLEE 1909


>gi|281349251|gb|EFB24835.1| hypothetical protein PANDA_005957 [Ailuropoda melanoleuca]
          Length = 2143

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 85/265 (32%), Gaps = 28/265 (10%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
             +    L  + K+  N  ++      +       L +  +K   +     +  K      
Sbjct: 1665 EEWLNLLLEYQKHMENFDQNVDYITNWIVQAEALLDESEKKKPQQKEDILKRLKAEMNDM 1724

Query: 458  DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT-----LINHPAILQEQYQELADIRYDN 512
              K  S R   ++L+  +      + E  +         I+H     +    L ++   N
Sbjct: 1725 RPKVDSTRDKAANLMANRGDHCRKVIEPKISELNHRFAAISHRIKTGKASIPLKELEQFN 1784

Query: 513  NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEA 569
            +++QKL   L ++  +      E+ ++ + E       ELL++ D   +         E 
Sbjct: 1785 SDIQKLLEPLEAEIQQGVNLKEEDFNKDMSEDNEGTVKELLQRGDNLQQRITDERKREEI 1844

Query: 570  NIVD--------------------VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
             I                        +   Q     ++   L +  ++IEK++A +    
Sbjct: 1845 KIKQQLLQTKHNALKDLRSQRRKKALEISHQWYQYKRQADDLLKCLDDIEKKLASLPEPK 1904

Query: 610  EAEKTAILISILHEVHIQIHQIESQ 634
            +  K   +   L +   +++ +  Q
Sbjct: 1905 DERKIKEIDRELQKKKEELNAVRRQ 1929


>gi|268373744|gb|ACZ04324.1| dystrophin [Canis lupus familiaris]
          Length = 3679

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 85/265 (32%), Gaps = 28/265 (10%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
             +    L  + K+  N  ++      +       L +  +K   +     +  K      
Sbjct: 1670 EEWLNLLLEYQKHMENFDQNVDYITNWIIQADALLDESEKKKPQQKEDILKRLKAEMNDI 1729

Query: 458  DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT-----LINHPAILQEQYQELADIRYDN 512
              K  S R   ++L+  +      + E  +         I+H     +    L ++   N
Sbjct: 1730 RPKVDSTRDQAANLMANRGDHCRKVVEPKISELNHRFAAISHRIKTGKASIPLKELEQFN 1789

Query: 513  NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEA 569
            +++QKL   L ++  +      E+ ++ + E       ELL++ D   +         E 
Sbjct: 1790 SDIQKLLEPLEAEIQQGVNLKEEDFNKDMSEDNEGTVKELLQRGDNLQQRITDERKREEI 1849

Query: 570  NIVD--------------------VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
             I                        +   Q     ++   L +  ++IEK++A +    
Sbjct: 1850 KIKQQLLQTKHNALKDLRSQRRKKALEISHQWYQYKRQADDLLKCLDDIEKKLASLPEPR 1909

Query: 610  EAEKTAILISILHEVHIQIHQIESQ 634
            +  K   +   L +   +++ +  Q
Sbjct: 1910 DERKIKEIDRELQKKKEELNAVRRQ 1934



 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 116/423 (27%), Gaps = 23/423 (5%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +     ++      ++L N    LN + K   +
Sbjct: 2524 ELITAAQNLKNKTSNQEARTIITDRIERI----QSQWDEVQEHLQNRRQQLNEMLKDSTQ 2579

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +A      +           + L +    + +  D  
Sbjct: 2580 WLEAKEEAEQVLGQARAKLESWKEAPYTVD-AIQKKITETKLAKDLRQWQINVDVANDLA 2638

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2639 LKLLRDYSADDTRKVHMITENINASWASIHKRLSEREAALEETHRLLQQF-PLDLEKFLA 2697

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 2698 WLTEAETTANVLQDATHKERLLEDSKGVRELMKQWQDLQGEIEAHTDIYHNLHENGQKVL 2757

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2758 RSLEGSDDAALLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 2817

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2818 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 2876

Query: 550  -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             L Q  R++         T        +   Q   L        R+ +E  +++ ++   
Sbjct: 2877 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTQWEKLNVHSADWQRKIDEALERLQELQEA 2936

Query: 609  GEA 611
             + 
Sbjct: 2937 TDE 2939


>gi|303310769|ref|XP_003065396.1| spindle associated family protein [Coccidioides posadasii C735
           delta SOWgp]
 gi|240105058|gb|EER23251.1| spindle associated family protein [Coccidioides posadasii C735
           delta SOWgp]
 gi|320034731|gb|EFW16674.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 1237

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 92/320 (28%), Gaps = 17/320 (5%)

Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375
           R V   + D    +      +L           N       E  +              +
Sbjct: 503 RDVARKERDSASSQLCEIEDELRSRGDDKNLLQNRHDALTHESQELQRDLERARDNIADL 562

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            + +      +    E+       E   L+  +++    ++D + ++   +   + +++ 
Sbjct: 563 EQQISDEKQRYFEAIEDLRLRHRHEIDLLQDDIESLKRKLEDSEAQFNVDRDKWESVKRT 622

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-KLSKKPSLREAALLLTLINH 494
                 +       +K+      Q   S    +  L       K+  L+E  LL   I  
Sbjct: 623 LDLQKHQAEQQASGYKRTVERLQQTESSLSGKEKRLQDAIDSEKQLHLQEKELLNCQIK- 681

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             +  +       I     EL  L   L     E +    EE  + L +         + 
Sbjct: 682 -DLTDDITSRRQTIESQRTELLSLKEELRVAKREGEMM--EEKIRNLEDEA-------II 731

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            +           +     V +  +Q     +  + L  Q  + E +++++ A       
Sbjct: 732 LKASLEQEMQFGEDKRRNGVSELEKQLQNSLREKQTLRDQVAKAEAELSELRAA-----L 786

Query: 615 AILISILHEVHIQIHQIESQ 634
             + +   E+  Q+++  +Q
Sbjct: 787 LDIEADRDELKSQLNRFHNQ 806


>gi|256384051|gb|ACU78621.1| putative membrane protein [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256384883|gb|ACU79452.1| putative membrane protein [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455868|gb|ADH22103.1| putative membrane protein [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 907

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 101/270 (37%), Gaps = 10/270 (3%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC-INHIKDQKLRYYYS 425
            K   +KL +E+  L  +  K E + ++    +   +     K    N IK Q  R    
Sbjct: 544 QKDKLQKLEIENQRLKTLNQKLEKDLQAAEQRNSINQRNFESKEKDFNKIKSQLERDLV- 602

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             + + ++QL Q      S      +   R  + +  + +    S+ K    K   + E 
Sbjct: 603 -RLSNEIKQL-QSSNKSLSTKSEELESTKRRIENELETIKKETVSINKQLEEKVREIGEN 660

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
               T+ N+  +L+ + +E+  +   NNEL  L +   S   +++    E    +     
Sbjct: 661 K--QTISNYSQLLETRLKEIEKV---NNELSVLQASNSSLEKDKQKLNEEISSLKSESSS 715

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLSRQKEEIEKQIAQ 604
             EL++  ++++      S   +  + + +  Y   L  +K + + L + K+++   + +
Sbjct: 716 NKELIRLKEQELNKYKEDSNKVKRQLEEKQNEYYDLLNKFKEQKQELDQLKQKLASTVNK 775

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                   K   L   L +   ++   +S 
Sbjct: 776 NEISKLQSKIEELNQELDKKKKELAAFKSS 805


>gi|221127963|ref|XP_002165234.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 764

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 78/235 (33%), Gaps = 17/235 (7%)

Query: 416 KDQKLRYYYSQAIRDRLQQLF---QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
            D + +    Q ++ R+++L    +  +           K    +  +       ++ ++
Sbjct: 496 SDLEEKNTTMQELKTRVEELKMENEYQLRLKDMNYNETIKQLTEKFLQEIELLKTKNQIL 555

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQ-----------YQELADIRYDNNELQKLWSF 521
           K    K+   ++  L   L +H   L++            Y++   ++  N   Q+ +  
Sbjct: 556 KTDREKEVEKQQEELADLLAHHNKQLEDIDTVNNKKLMTEYEKYQQLQIKNQRNQEEFEK 615

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-Q 580
           L     E +    +E+ +   ++   E    LD    +        E     + +    +
Sbjct: 616 LRQQMEESREKALQELTEFYEKK-LQEKNSHLDNLNEELAQNLLEYEETKKQIEEDADCE 674

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            L +  ++    R +++   ++          K       + E+  +I ++  +E
Sbjct: 675 ILDINNKYEKRLRDEKDANLRLK-GETGLMKRKFTSQQKEIEELKSEIQRLHGEE 728


>gi|114671062|ref|XP_511754.2| PREDICTED: leucine-rich repeat-containing protein 45 [Pan
           troglodytes]
          Length = 670

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 91/280 (32%), Gaps = 9/280 (3%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                   +L+  +      L +R+ +       +        L++     +   L    
Sbjct: 316 EQKAQDLGELLATAEQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQ 375

Query: 425 SQAIRDRLQ-QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              +  + + Q  Q + T         +   R    +       +      + S+   ++
Sbjct: 376 VDELERKFRCQQEQLFQTRQEMTSMSAELKMRAIQAEERLDMEKRRCRQSLEDSESLRIK 435

Query: 484 E-AALLLTLINHPAILQEQYQELADIRYD-NNELQKL-WSFLFSDFVEQKYFLPEEIHQR 540
           E   +   L      +QE+ Q L   R     EL ++  + L      ++  +  +   R
Sbjct: 436 EVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKAAALSERGQAEEELIKAKSQAR 495

Query: 541 LCERG-FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           L E+     L  +L    +               V +   +   L  +   L R+ EE++
Sbjct: 496 LEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQ 555

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +++    +  + E+ A +  +  E+  Q  +++++ A  E
Sbjct: 556 QEL----SLKDQERVAEVSRVRVELQEQNGRLQAELAAQE 591


>gi|78776576|ref|YP_392891.1| replicative DNA helicase [Sulfurimonas denitrificans DSM 1251]
 gi|78497116|gb|ABB43656.1| primary replicative DNA helicase [Sulfurimonas denitrificans DSM
           1251]
          Length = 483

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 56/162 (34%), Gaps = 22/162 (13%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-------- 535
           E ++L +++  P+   E   +L    +     Q ++  +   F + +    E        
Sbjct: 11  ERSILSSIVFEPSQFDELSSQLKKDDFYLPAHQDIFGVMTLLFQKDQPIDEEFIKKELIK 70

Query: 536 -------EIHQRLCERGFGEL---LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
                   + + L           ++++  +     L + TTE      R   ++ L+  
Sbjct: 71  IKKFDENVMLEILSANPISNTKAYVEEIRDKSLKRHLLTLTTEIK----RVTVEEELSSQ 126

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +   ++ ++  EI +       K   + T   ++ + E+  +
Sbjct: 127 EVIDIVEKKLYEITQNNQTSDFKDSPKMTFDTMTYIKEMKAR 168


>gi|29336026|ref|NP_082297.1| myosin-14 [Mus musculus]
 gi|28801584|gb|AAO47092.1| nonmuscle myosin heavy chain [Mus musculus]
          Length = 1992

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 71/252 (28%), Gaps = 20/252 (7%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            RE ++      + R   E          + ++     ++ +  RL +  +          
Sbjct: 1377 RELQSTQAQLSEWRRRQEEEAAVLEAGEEARRRAAREAETLTQRLAEKTEAVERLERARR 1436

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            R  ++        G  ++L+ +   K +   +    E A +L  +     ++ + +E   
Sbjct: 1437 RLQQELDDATVDLGQQKQLLSTLEKKQRKFDQLLAEEKAAVLRAVEDRERIEAEGREREA 1496

Query: 508  IRYD---------------NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                                 + + L + L +    +              +   +    
Sbjct: 1497 RALSLTRALEEEQEAREELERQNRALRAELEALLSSKDDVGKNVHELERARKAAEQAASD 1556

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQ-----QALALYKRFRLLSRQKEEIEKQIAQVTA 607
            L  QV +        E   + +    Q         L  R      ++ ++ KQ+     
Sbjct: 1557 LRTQVTELEDELTAAEDAKLRLEVTVQALKAQHERDLQGRDDAGEERRRQLAKQLRDAEV 1616

Query: 608  KGEAEKTAILIS 619
            + + E+    ++
Sbjct: 1617 ERDEERKQRALA 1628



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 84/271 (30%), Gaps = 7/271 (2%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQAI 428
             + +L ++  PL+ +  + E          +  EL+      +  ++ +  +       +
Sbjct: 846  QWWRLFIKVKPLLQVTRQDEVLQARAQELQKVQELQQQSAREVGELQGRVAQLEEERTRL 905

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             ++L+   +          R   +           +  +       +  +    R    +
Sbjct: 906  AEQLRAEAELCSEAEETRARLAARKQELELVVTELEARVGEEEECSRQLQSEKKRLQQHI 965

Query: 489  LTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              L +H    +   Q+L   +      ++K    L     +      E          F 
Sbjct: 966  QELESHLEAEEGARQKLQLEKVTTEAKMKKFEEDLLLLEDQNSKLSKERRLLEERLAEFS 1025

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE----EIEKQIA 603
                + + +V+         EA I D+    ++     +    L R+ +    E+++Q+ 
Sbjct: 1026 SQAAEEEEKVKSLNKLRLKYEATISDMEDRLKKEEKGRQELEKLKRRLDGESSELQEQMV 1085

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +   + E E  A L     E+   + + E +
Sbjct: 1086 EQKQRAE-ELLAQLGRKEDELQAALLRAEEE 1115


>gi|24375634|ref|NP_719677.1| HlyD family secretion protein [Shewanella oneidensis MR-1]
 gi|24350540|gb|AAN57121.1|AE015846_3 HlyD family secretion protein [Shewanella oneidensis MR-1]
          Length = 441

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 12/166 (7%)

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           S     REA     L +HP +++    +L  +  +N +   + S L      +      +
Sbjct: 126 SAFIESREANFASYLESHPNLVKGHISDLERM--NNEKQAIIQSSLAEIAKSKAELASLD 183

Query: 537 -----IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                +  ++      + +  ++       +   T   +   +    ++  ++  + ++L
Sbjct: 184 QEIPPLKHQITSA--QQTINMMESIKESQAVSKLTMLESQQKLDSYIRELKSMEGKQQVL 241

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAI---LISILHEVHIQIHQIESQ 634
           +R  E +++Q+ Q  A    E         + L  +  ++   +SQ
Sbjct: 242 ARDIENLQRQLEQKQATLLKEVGEARTDAQAELLGITARLKSSDSQ 287


>gi|322376751|ref|ZP_08051244.1| ABC transporter, ATP-binding protein [Streptococcus sp. M334]
 gi|321282558|gb|EFX59565.1| ABC transporter, ATP-binding protein [Streptococcus sp. M334]
          Length = 633

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+    +    +  +  A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KAEVEM-SLTEEASTNNQVKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +AEK   L   L ++  +      +EAM+E
Sbjct: 591 VISEQMLETNDAEKLMELQVELDKISHR-----QEEAMLE 625


>gi|301771215|ref|XP_002921048.1| PREDICTED: protein Hook homolog 2-like [Ailuropoda melanoleuca]
          Length = 717

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 88/262 (33%), Gaps = 25/262 (9%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  DE  +           +   + R    + +R +++QL ++         +   +  R
Sbjct: 295 DEMDELRQSSERAGQLEATLSSCRRRLGELRELRRQVRQLEERNAGHAERTRQLEDELRR 354

Query: 456 HRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLT--LINHPAILQEQYQEL----ADI 508
               +     + +Q   ++G+  ++    E  L     L     ++ ++ + L      +
Sbjct: 355 ASSLRAQLEAQRLQVQELQGQRQEEAMKAEKWLFECRNLEEKYELVTKEKERLLAERDSL 414

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLP-----EEIHQRLCERGFGELLKQLDRQVRDAGLW 563
           R  N EL+                 P     E +   +      E L +L R+ +     
Sbjct: 415 RDANEELRCAQLQPRGLTQADPSLDPTSPAVENLAAEILPAELRETLLRLQRENKQLCQQ 474

Query: 564 SATTEANIVDVRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKGEAE 612
            A       ++++  + A                +   L  Q E+++K + +    G+ E
Sbjct: 475 EAAYRERQEELQRHLEDANRARHGLETQLRLNQQQLSELRAQVEDLQKALQE--QGGKTE 532

Query: 613 KTAILISILHEVHIQIHQIESQ 634
            +A+L   L E   ++H+ + +
Sbjct: 533 DSALLKRKLEEHLQKLHEADLE 554


>gi|300676795|gb|ADK26671.1| coiled-coil domain containing 88A [Zonotrichia albicollis]
          Length = 1881

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 99/308 (32%), Gaps = 36/308 (11%)

Query: 366 YGKTAFEKLIVESLP--LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
             K + +    +S          ++  E    N+  +   LE   ++    +   + R  
Sbjct: 515 QEKQSLQNSQNQSKDLLKEKAQLEKTLEALRENSERQIKLLEQENEHLNQTVASLRQRSQ 574

Query: 424 YSQAIR----DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            S   R    ++  ++  + I E S      +   +   ++    +       + +    
Sbjct: 575 ISAEARMKEIEKENKILHESIKETSSKLNKMEFEKKQVRKELEHYKEKGERAEELENELH 634

Query: 480 PSLREAALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +E  LL   I +  I  E+ + L     D+  +N +L+K    L +   + +    E
Sbjct: 635 RLEKENELLQKKITNLKITCEKIEALEQENSDLEMENRKLKKTLDSLKNLTFQLESLEKE 694

Query: 536 EIHQRLCERGFGELLKQLD---RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                         ++ L     +V    L +   E+    +++  +   A +K+   L 
Sbjct: 695 NSQLDEENLELRRTIESLKCTSIKVAQLQLENKELESEKEQLKKSLELMKASFKKTERLE 754

Query: 593 ---------------------RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                                ++ +++E ++  +  +   +     +  L     ++ Q+
Sbjct: 755 VSYQGLDTENQRLQKALENSNKKIQQLESELQDLETEN--QTLQKNLEELKISSKRLEQL 812

Query: 632 ESQEAMIE 639
           E +  ++E
Sbjct: 813 EKENKLLE 820



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 72/231 (31%), Gaps = 20/231 (8%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    +     L+Q   +   +     +  K+  +  + K  +       +   +   K 
Sbjct: 808  RLEQLEKENKLLEQETSQLEKDKKQLEKENKRLRQQAEIKDSTLEENNVKISNLERENKS 867

Query: 481  SLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +E  +   + +    + +E  + +     D   L  L   L +          E++  
Sbjct: 868  LFKEIVVYKESCLRLKELEKENKELVKRATIDKKTLVTLREDLVN----------EKLKT 917

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEI 598
            +       +L  +L++   +        +++    +    +  +  K+   +  +    +
Sbjct: 918  QQMNNDLEKLAHELEKIGLNKERLLHDEQSSDDRYKLLESKLESTLKKSLEIKEEKIAAL 977

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIEGFGKMSG 646
            E ++ + T          L   L  V      + Q + +E M++     SG
Sbjct: 978  EARLEESTNLN-----QQLRQELKTVKKNYEALKQRQEEERMVQNSPPRSG 1023


>gi|302829621|ref|XP_002946377.1| hypothetical protein VOLCADRAFT_79066 [Volvox carteri f.
           nagariensis]
 gi|300268123|gb|EFJ52304.1| hypothetical protein VOLCADRAFT_79066 [Volvox carteri f.
           nagariensis]
          Length = 863

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 79/213 (37%), Gaps = 14/213 (6%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI + +   R +++    +     +  +++    + ++     + ++AL+   +   
Sbjct: 284 YRKYIEKDAALERRFQQVYVDQPTVAETVSILRGLRERYEVHHGVRISDSALVEAAVLSD 343

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S  +       + +   +      ++  +   
Sbjct: 344 RYIADRFLPDKAIDLVDEAAAKLKMEITSKPMALDEIDRKVLQLEMERLSLEKVSDR--- 400

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------QIAQVTAK 608
               A    AT +A +  ++   Q   A ++R +    + +++++       +IAQ    
Sbjct: 401 ---GAAARLATLDAELSRLKSEQQVITAQWQREKADMSRVQDLKEEIERVNIEIAQAERD 457

Query: 609 GEAEKTAIL-ISILHEVHIQIHQIESQEAMIEG 640
            +  + A L    LH +  Q+       A  +G
Sbjct: 458 YDLNRAAELKYGTLHNLQKQLKIAGEALARKDG 490


>gi|283779943|ref|YP_003370698.1| chromosome segregation ATPase-like protein [Pirellula staleyi DSM
           6068]
 gi|283438396|gb|ADB16838.1| Chromosome segregation ATPase-like protein [Pirellula staleyi DSM
           6068]
          Length = 1130

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 31/283 (10%), Positives = 83/283 (29%), Gaps = 38/283 (13%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR--------YYYSQAIRDRLQQLFQ 437
            ++E       + +   EL   + +    ++    +            Q +R  L    Q
Sbjct: 289 LQQELSRARCESVEHTTELSQLVSSLRLQLESALAQQGSQADATEVQLQELRRNLALTQQ 348

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
           +  +         ++    R      Q L      + +  +   LR+       + H ++
Sbjct: 349 QLASRDEQIALLQEELESSRGSMMTQQFLPAVPTPEVESEELLQLRQQ------LEHMSL 402

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSD-----FVEQKYFLPEEIHQRLCERGFGELLKQ 552
            ++   + A       EL+               +E +    E+ H  L E         
Sbjct: 403 ERDTQSQRASA--TEEELRDARQRAAELEDRIELLENRLASAEQEHLELLEAQQQAAHSP 460

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI------AQVT 606
           ++  +      +        D      + + L  +    + Q  ++E Q+       ++ 
Sbjct: 461 VESVIPAGLACTLPASEVDPDTVAREAELVQLRMQLTETAEQVAQLESQLEAQLQARRID 520

Query: 607 AKGEAEKTAILISI-----------LHEVHIQIHQIESQEAMI 638
            +    +   L++            L E+  Q+   ++++A +
Sbjct: 521 REEAEARLEQLMAAHRESDAEAQRVLEELRAQLIDAQTEQANV 563


>gi|301118604|ref|XP_002907030.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262108379|gb|EEY66431.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 6248

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 71/227 (31%), Gaps = 32/227 (14%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
              +LQ     +           KKN RH  Q+      +  +    +        EA + 
Sbjct: 5020 AQQLQTAEAAHSKRKLADRLAEKKNKRHLQQQKHESDGVSVAAKSLEDEAVRLRLEAQIE 5079

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              L                    + E  KL   L ++   Q+  L + I +R  +R    
Sbjct: 5080 SQLAACRDA-------------HDAEAAKLRESLQAERERQERSLQDRIARRKEKRISQA 5126

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDV--------------RQGYQQALALYKRFRLLSRQ 594
              K   +   +A L     E   +                R+  +   AL +R +   R+
Sbjct: 5127 TAKADVKVAEEAELKQQQEEEAALAAALAAQEKEAWDAIQRKQEEAVRALQERKQQQERE 5186

Query: 595  KEEIEKQIAQVTAKGEAEKTAILISIL-----HEVHIQIHQIESQEA 636
            + E+++Q+AQ       E+    +  L      E   Q  +++ + A
Sbjct: 5187 RAELQQQVAQQEMNRLQEEHERELRALTASLAQEQTRQEEKLQQRIA 5233



 Score = 40.3 bits (92), Expect = 0.98,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 76/225 (33%), Gaps = 23/225 (10%)

Query: 422  YYYSQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLS 477
              YSQA  DR  +  +      E        K+NA   D    S  +    L +   K  
Sbjct: 3328 DVYSQAWNDRARILAMEDALKKEQLNDRLRRKRNALKHDIDAASSEIKDDVLEEVVKKQD 3387

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFLFSDFVEQKYFLP 534
                L++ A+   +      + +     A      +  + + ++       F E      
Sbjct: 3388 DMDLLQQEAVDRAVERLRQQVADCKNRGAADEKDGFQQDGINEVVKT-ARHFAEADKVQA 3446

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR--QGYQQALALYKRFRLLS 592
            E++     +      L++L  +  D  L +   +     +R     Q+ALA  +R     
Sbjct: 3447 EKVIAHAEDE-----LQKLKGEY-DHDLKTLREDIENERLRLNAKMQRALAAKRRRGT-- 3498

Query: 593  RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
              KEE+E Q+ + T     E          E+  ++   ++Q A+
Sbjct: 3499 -PKEELETQLEEFTDTALEELRTKHF----ELQQKMEAEKAQSAI 3538



 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 63/222 (28%), Gaps = 18/222 (8%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
               R               ++   +     R     AR   ++  +++  +S   +  + 
Sbjct: 4661 SVDREIALVQRAHARGVKSRRDQLDAETAARKAALTARLEHKRRAARKGDESGKTEADIE 4720

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            K   L E   L  +        E  + + +   D    Q+    L +   E       +I
Sbjct: 4721 KALQLEEQQELGAI--------EHERAVKERELDVEAAQE-KERLANALREAHERGAADI 4771

Query: 538  HQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-------LALYKRF 588
             ++L   ++       +LD  +R             ++ R+   +A              
Sbjct: 4772 ERQLAACKQAHDIESTKLDETLRAERARQELALKQRLNARRQRIRASGGNATDQDSSDAE 4831

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
              + ++ E  + ++A        +        L  V  Q+ +
Sbjct: 4832 TAIEQEAEVAQAELADQERVARQQLAERQQQELSVVARQLEK 4873



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/220 (7%), Positives = 60/220 (27%), Gaps = 14/220 (6%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            +       +  +               + R    +   ++  +    +   S   S+   
Sbjct: 5004 EEAARVAAEFDRHRGDAQQLQTAEAAHSKRKLADRLAEKKNKRHLQQQKHESDGVSVAAK 5063

Query: 486  ALLLTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            +L        A+      ++   +    +      + L      ++      +  R+  R
Sbjct: 5064 SL-----EDEAVRLRLEAQIESQLAACRDAHDAEAAKLRESLQAERERQERSLQDRIARR 5118

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                + +   +        +   +    +       A    + +  + R++EE  + + +
Sbjct: 5119 KEKRISQATAKADVKVAEEAELKQQQEEEAALAAALAAQEKEAWDAIQRKQEEAVRALQE 5178

Query: 605  VTAKGEAEKTA-------ILISILH-EVHIQIHQIESQEA 636
               + E E+           ++ L  E   ++  + +  A
Sbjct: 5179 RKQQQERERAELQQQVAQQEMNRLQEEHERELRALTASLA 5218


>gi|255939836|ref|XP_002560687.1| Pc16g03210 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585310|emb|CAP92991.1| Pc16g03210 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 536

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 58/161 (36%), Gaps = 20/161 (12%)

Query: 497 ILQEQYQELADIRYDNNELQKL---WSFLFSDFVEQKYFLP--EEIHQRLCERGFGELLK 551
           ++ +  ++   + + + + QK    +S +     + +      +++ + +  +   EL+ 
Sbjct: 25  LMNKIIEQFRQLTF-DPDFQKASATYSQVKDQQDQIQIRDEKLDKLQKHIKAQEENELVA 83

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            L R        +   E    +     +  +   K    +SR+ +E++ QI    ++   
Sbjct: 84  -LSRFSAVNQALTTQKEKAEKENASLRKAVIEREKSLTEISRRIQELQGQIQTQLSERSQ 142

Query: 612 EKTA-------------ILISILHEVHIQIHQIESQEAMIE 639
           ++                L   L E    + ++++  A +E
Sbjct: 143 DERRMTSIIAQHKLDIGSLQRRLTERDTSVDEMKATTANLE 183


>gi|21213877|emb|CAD13471.1| cytoplasmic intermediate filament protein [Priapulus caudatus]
          Length = 547

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 86/254 (33%), Gaps = 18/254 (7%)

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
             + ++          ELE  +   I  I     +    +    RL++ + + +T  +  
Sbjct: 154 FHKLDDIHSEDILRLLELEDQMAQKIAIINGLLAKIKILEDEIARLKREYNRLLTLVNDT 213

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
               ++    R         +Q  +   +   +  LRE  LL +L+       + Y+ + 
Sbjct: 214 KIRNEEEIMIRKDLEHRIPGIQEEIAFKQQLHEQELRE--LLDSLMKDD---TDIYRNIF 268

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
                +  L+ +         ++        ++ + +    E++K   ++  +       
Sbjct: 269 HNELSS-ALRDIRKEYEEQMAKKPR------NEEVYQTRIQEIIKTTAKKSSEELSLKDQ 321

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI------LISI 620
              +     +  +  + L  R   L R+ EE+E+ +    ++ + +          L S 
Sbjct: 322 ARKDRTKETEMSKDVIGLKSRGDHLRRRIEELERVLTNERSEFDIDMKQRDEKMLLLKSK 381

Query: 621 LHEVHIQIHQIESQ 634
           L ++  ++ ++  +
Sbjct: 382 LEDMLREMQEMLDE 395


>gi|38566257|gb|AAH62935.1| Structural maintenace of chromosomes 3 [Mus musculus]
          Length = 1216

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 112/333 (33%), Gaps = 17/333 (5%)

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
           +     +++  +G             L              LL  G  P           
Sbjct: 23  FSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQRLALLHEGTGPRVISAFVEIIF 82

Query: 371 FEKLIVESLPLVDMLWKRET-ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
                   +   ++  +R     +     D++   +  + N +      +   YY    +
Sbjct: 83  DNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKNDVMNLLESAGFSRSNPYYIVK-Q 141

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            ++ Q+     ++     R       + ++K  S  LM+ +  K +           LL 
Sbjct: 142 GKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMKETEGKREKIN-------ELLK 194

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +      L+E+ +ELA  +  +   + L   +++  + +     +E+  +    G    
Sbjct: 195 YIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDELSAKRETSGEKS- 253

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVR------QGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +QL    +DA       E  + +++      +  ++ L+  ++ ++  R K E++ +  
Sbjct: 254 -RQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQLSAERQEQIKQRTKLELKAKDL 312

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           Q    G +E+   L+    ++  +I + + + A
Sbjct: 313 QDELAGNSEQRKRLLKERQKLLEKIEEKQKELA 345



 Score = 37.6 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 37/346 (10%), Positives = 99/346 (28%), Gaps = 25/346 (7%)

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T     ++  L K     +   + +   L    K   +                    D 
Sbjct: 182 TEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDE 241

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            S  R        +L        D +   E + R   T     + E             +
Sbjct: 242 LSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQL-------SAE 294

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    Q  +  L+    +     +   R      R +  +   ++  + +  + K +  
Sbjct: 295 RQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSV 354

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK--LWSFL--FSDFVEQKYFLPE 535
               E  +               ++    ++ + E +   +   L      +  K     
Sbjct: 355 KEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIA 414

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            IH+ L +              ++  L     + ++ +V+   ++   L +++  +  +K
Sbjct: 415 AIHKDLEDTEAN----------KEKNLEQYKLDQDLNEVKARVEE---LDRKYYEVKNKK 461

Query: 596 EEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMIEG 640
           +E++ +   +  +  AE +         E   Q+ +  + +A++ G
Sbjct: 462 DELQSERNYLWREENAEQQALAAKREDLEKKQQLLRAATGKAILNG 507


>gi|157279731|ref|NP_001098421.1| myosin-1 [Sus scrofa]
 gi|75056480|sp|Q9TV61|MYH1_PIG RecName: Full=Myosin-1; AltName: Full=Myosin heavy chain 1; AltName:
            Full=Myosin heavy chain 2x; Short=MyHC-2x; AltName:
            Full=Myosin heavy chain, skeletal muscle, adult 1
 gi|5360750|dbj|BAA82146.1| myosin heavy chain 2x [Sus scrofa]
          Length = 1939

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1565 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHVRVVESMQSMLDAEIRSRNDAIRLKKKMEG 1624

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1625 DLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQIHLDDAL-----RSQEDLKEQ--LAM 1677

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1678 VERRANLLQAEIEELRATLEQTERSRKVAEQELLDASERVQLLHTQNTSLINTKKKLETD 1737

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1738 ISQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1797

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1798 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1829


>gi|251789135|ref|YP_003003856.1| hypothetical protein Dd1591_1522 [Dickeya zeae Ech1591]
 gi|247537756|gb|ACT06377.1| conserved hypothetical protein [Dickeya zeae Ech1591]
          Length = 562

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 8/134 (5%)

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
           NN   KL   +   F    Y        R+ +      L +L   V    +     E   
Sbjct: 288 NNNYGKLAQEIKDAFNLVNYNGAAFRSARITDTFLQARLNELKWAVAVHEIMLQEKEEQR 347

Query: 572 ---VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK---GEAEKTAILISILHEVH 625
                +R+  +      K  +   ++++ I++ I + T +      E+   L   L E+ 
Sbjct: 348 RIKEQLREEEKARREYEKAIKEAEKEEKAIKQAIEKATKEMLDASEEQRLTLEKKLQELQ 407

Query: 626 IQ--IHQIESQEAM 637
            +    + ++Q A+
Sbjct: 408 RKYDEAEAKNQRAI 421


>gi|291296953|ref|YP_003508351.1| myosin-like domain-containing protein [Meiothermus ruber DSM 1279]
 gi|290471912|gb|ADD29331.1| Putative myosin-like domain containing protein [Meiothermus ruber
           DSM 1279]
          Length = 481

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 66/202 (32%), Gaps = 37/202 (18%)

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
           RD +    +       + +L  +    E         +  +      +L    +   +  
Sbjct: 68  RDARETILQAEAVRQERDRLRTEVERLENRAASIFSQYEQL------KLERDEF--EKNN 119

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERG-FGELLKQLDRQVRDAGLWSATTEANIVDVR 575
            L +   +   E +    +++   L ER    + +++L               A   +  
Sbjct: 120 TLLARQLAQNAELQRQTRQDLEDALVEREKLRQEVEELQAAS-----------AAQREAL 168

Query: 576 QGYQQA-LALYKRFRLLSRQKEEI--------------EKQIAQVTAKGEAEKTA--ILI 618
           +  +Q  L+L +    L ++K ++              E+Q+          +T    L 
Sbjct: 169 EQLKQIRLSLLQEKEQLQKEKTQLLADRATLVAQAHKAEQQLQAFERASREARTRLKALQ 228

Query: 619 SILHEVHIQIHQIESQEAMIEG 640
           +   E+  ++ Q+E+ +  +EG
Sbjct: 229 TRTAELEARLRQLEADKRNLEG 250



 Score = 37.9 bits (86), Expect = 4.7,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 77/234 (32%), Gaps = 36/234 (15%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L+    +  RDRL+   ++     +     +++    RD+   +  L+   L +    +
Sbjct: 74  ILQAEAVRQERDRLRTEVERLENRAASIFSQYEQLKLERDEFEKNNTLLARQLAQNAELQ 133

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-- 536
           + + +   L   L+    + QE  +  A        L++L     S   E++    E+  
Sbjct: 134 RQTRQ--DLEDALVEREKLRQEVEELQAASAAQREALEQLKQIRLSLLQEKEQLQKEKTQ 191

Query: 537 -IHQRL----CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----- 586
            +  R           + L+  +R  R+A       +    ++    +Q  A  +     
Sbjct: 192 LLADRATLVAQAHKAEQQLQAFERASREARTRLKALQTRTAELEARLRQLEADKRNLEGD 251

Query: 587 ----------------RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
                           +   L R+  E++  +A+   +        L+   +++
Sbjct: 252 IAVLVSPQASASDNSHQLEALQRENSELKSSLAEAQRE------LQLLRERNQM 299


>gi|227873473|ref|ZP_03991723.1| DNA replication protein DnaC [Oribacterium sinus F0268]
 gi|227840680|gb|EEJ51060.1| DNA replication protein DnaC [Oribacterium sinus F0268]
          Length = 452

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 48/176 (27%), Gaps = 13/176 (7%)

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E +++  +I     +    + L    + N +   L+  +     E        +
Sbjct: 14  PHAKEAEESVIGAMIRDQDAVMTALEILVPEDFYNRQYHILFDAMREMSSEGVTIDFVSL 73

Query: 538 HQRLCE-----------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA--L 584
            +RL                  L   +              E + +       + +A   
Sbjct: 74  QERLRRKKDVPPEFFSLETLRNLAISVPSVGNVRLYAEMVKEKSTLRALIKTNEEIAELC 133

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           Y     L    E  EK+I Q+  +    +   +  +   V  +I     Q+  I G
Sbjct: 134 YSGKEDLETILESTEKRIFQLLMQKNNRQFVPIDEVAMNVLRRIEAASKQKESITG 189


>gi|291190598|ref|NP_001167036.1| cell cycle progression 1 [Salmo salar]
 gi|223647502|gb|ACN10509.1| Cell cycle progression protein 1 [Salmo salar]
          Length = 861

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 67/212 (31%), Gaps = 14/212 (6%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           ++ +     + ++D+   +                  ++    +   + L+      G+ 
Sbjct: 304 NKDVVKSLREDLKDKSDMMLSLTGIMDKLTKENQDLRSKQAQLQAQKEDLVMKLKQTGEE 363

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             K   +++ L   ++ +  +     +E   +     EL+ L S +              
Sbjct: 364 RVKIESKQSHL---MVENQLLKSSLEREEESLSTLQEELRNLRSQIRELEETGAGAD--- 417

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
               L E     L   L+ + +    + +  EA + + +   ++     K    L  Q  
Sbjct: 418 --SMLSEN--QRLKDHLEEETQRLRSFLSQREALMAEAQTLRRELDNERKVTDQLREQLS 473

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
               +  +   + + E T  L S L E+  ++
Sbjct: 474 ---SRNTRAGGEVDPE-TEELQSRLMELQKKL 501


>gi|146278483|ref|YP_001168642.1| hypothetical protein Rsph17025_2449 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556724|gb|ABP71337.1| hypothetical protein Rsph17025_2449 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 830

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 85/289 (29%), Gaps = 63/289 (21%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             LR   ++ + +    + +  +       R  +       + G S   +Q  + + + +
Sbjct: 479 PALRDEIAEQLWEIALMVEEGDLASALEALRRAQDRLDEAIRNGASPDEIQRLMDEMRQA 538

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            +  +RE  L    + +P   Q+Q +    +    ++LQ++   L     + +     E+
Sbjct: 539 LENYMRE--LAEEAMRNPD--QQQSENRQTMEMSGDQLQEMLDKLQELMEQGRMAEAAEL 594

Query: 538 HQRLCE----------------------RGFGELLK-----------QLDRQVRDAGLWS 564
            + + +                      R   E L+           QL R         
Sbjct: 595 MEMMRQLMENMQVTMGEGQGQGPGSQAMRDLSETLRDQQGLSDESFRQLQRGPNGQPRGG 654

Query: 565 ATTEANIVDVRQGYQQALAL-----------------------YKRFRLLSRQKEEIEKQ 601
              E    D R    +   L                        +      R   E E+ 
Sbjct: 655 EEGEGEGQDGRSLADRQRELGDRLNGTQRGDLPGQGSERGESGRRSLDEAGRAMREAERA 714

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE---AMIEGFGKMSGR 647
           + +    G  ++ A  +  L E   ++ +  ++E      +G G+  GR
Sbjct: 715 LREGDMPGALDRQAEAMERLREGMRELGEAMAEEQRQQNGDGQGEAFGR 763


>gi|39996101|ref|NP_952052.1| replicative DNA helicase [Geobacter sulfurreducens PCA]
 gi|39982866|gb|AAR34325.1| replicative DNA helicase [Geobacter sulfurreducens PCA]
 gi|298505116|gb|ADI83839.1| replicative DNA helicase [Geobacter sulfurreducens KN400]
          Length = 456

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/77 (9%), Positives = 26/77 (33%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S++   K+  +    E ++L  ++     +    + +    +     +K++  +      
Sbjct: 2   SAVDLRKVPPQSIEAEMSILGGVLLDNEAINRCLELIEADDFYRESHRKIFRAMIDLSNR 61

Query: 529 QKYFLPEEIHQRLCERG 545
            +      +   L  +G
Sbjct: 62  SEPCDLITLTDMLKRKG 78


>gi|207080012|ref|NP_001128945.1| protein CASP [Pongo abelii]
 gi|75041633|sp|Q5R8V1|CASP_PONAB RecName: Full=Protein CASP
 gi|55730171|emb|CAH91809.1| hypothetical protein [Pongo abelii]
          Length = 678

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 98/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 101 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 161 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 220

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 221 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 280

Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 281 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 340

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 341 QLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 384


>gi|39938826|ref|NP_950592.1| hypothetical protein PAM_340 [Onion yellows phytoplasma OY-M]
 gi|39721935|dbj|BAD04425.1| hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 122

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 39/124 (31%), Gaps = 13/124 (10%)

Query: 5   RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVK--GDYWACCPFHDEKTPSF-HCNDSKGF 61
           +D IK +  + P+       V   +           Y   CP H  + P+  H       
Sbjct: 4   QDKIKHIKTNFPMI------VLLKKLNIIPPNFNTKYRFPCPIHQGQNPTCCHLTSDNKI 57

Query: 62  YYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            +C+ C    D +     +    +F  +++++     +         ++++ I       
Sbjct: 58  -HCWKCCKDYDIIDVYMEIREIKTFNNALEKINNF--MKTQEFKNLNKQQKSITKISYEP 114

Query: 121 IEVA 124
            E  
Sbjct: 115 FEKT 118


>gi|126352320|ref|NP_001075227.1| myosin-7 [Equus caballus]
 gi|75054114|sp|Q8MJU9|MYH7_HORSE RecName: Full=Myosin-7; AltName: Full=Myosin heavy chain 7; AltName:
            Full=Myosin heavy chain slow isoform; Short=MyHC-slow;
            AltName: Full=Myosin heavy chain, cardiac muscle beta
            isoform; Short=MyHC-beta
 gi|21907902|dbj|BAC05681.1| myosin heavy chain slow [Equus caballus]
          Length = 1935

 Score = 41.4 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 94/260 (36%), Gaps = 9/260 (3%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1566 NQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1626 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1685

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1745

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
            ++        +  I D     ++          L R K+ +E+ I  +  + +  +   L
Sbjct: 1746 QECRDAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  L ++  ++ ++E++
Sbjct: 1806 KGGKKQLQKLEARVRELENE 1825


>gi|330876952|gb|EGH11101.1| hypothetical protein PSYMP_16011 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330966745|gb|EGH67005.1| hypothetical protein PSYAC_19265 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 137

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            Q   L  R +   RQ++E+ +Q+     + +      L     ++ +Q+ +
Sbjct: 40  NQIADLQLRLKDSERQRDELTQQLQNANPERDTALLTRLRQENQKLKLQLKE 91


>gi|242220037|ref|XP_002475790.1| predicted protein [Postia placenta Mad-698-R]
 gi|220724994|gb|EED79003.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1164

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 90/280 (32%), Gaps = 21/280 (7%)

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI-HLKNCINHIKDQKLRYYY-S 425
           +   ++   ES+    M           +   E  E E          ++++     Y  
Sbjct: 250 QEEVDRSREESMDRSMMDEASGQALHQLHRRIESLERERADGDRREQEMREELEARVYEL 309

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE- 484
           Q +RD L +  +      +G     ++  +  +  G  + + +   +  +  ++ +  E 
Sbjct: 310 QEVRDELARRDESEQELKAGIRAAKEEMEQMGELTGNHEAIARQIHLNEEAERQRAAAEV 369

Query: 485 ------AALLL----TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                   LL         H ++  +  +   ++   + E+  L + +     +      
Sbjct: 370 AWDEERQKLLSDNESLRSEHISLQAQVTELREEVVRKDAEIGMLKAEV-EAQWKHTETGS 428

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E++   + ER   EL  ++D                     +   +   ++     L R+
Sbjct: 429 EKLQHLVQER--DELKAEVDALNERISGMEEDWSQGENKKVELENEIQEVWAAKEDLERE 486

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           + E+E QI       E E +  L   L E   ++  +E +
Sbjct: 487 RTELEDQIR-----AEHEHSEHLTQALQEGEDRVATLEQE 521



 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 4/88 (4%)

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           K++    R         + +  +         A  +    L R+ E +E++      + E
Sbjct: 237 KRVSELERAVRGLQEEVDRSREESMDRSMMDEASGQALHQLHRRIESLERE-RADGDRRE 295

Query: 611 AEKTAILIS---ILHEVHIQIHQIESQE 635
            E    L +    L EV  ++ + +  E
Sbjct: 296 QEMREELEARVYELQEVRDELARRDESE 323


>gi|119593486|gb|EAW73080.1| coiled-coil domain containing 18, isoform CRA_c [Homo sapiens]
          Length = 1265

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/253 (9%), Positives = 85/253 (33%), Gaps = 4/253 (1%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            R+ +       +E +++E  + +     +++ +       I D+ +   +K         
Sbjct: 752  RQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELE 811

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            +          +    + ++++ L       K +LR+   L  ++    +  E  ++   
Sbjct: 812  KLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTT 869

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            I+    EL++    +     E          +    +     +  LD  +R+        
Sbjct: 870  IKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 929

Query: 568  EANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
               +   + +   +     K+   L+ + +  ++Q+ +        +   +  +  E+  
Sbjct: 930  IIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNE-QEISQLKKEIER 988

Query: 627  QIHQIESQEAMIE 639
               +++  E++++
Sbjct: 989  TQQRMKEMESVMK 1001


>gi|62897223|dbj|BAD96552.1| CCAAT displacement protein isoform b variant [Homo sapiens]
          Length = 678

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 98/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 101 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 161 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 220

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 221 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 280

Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 281 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 340

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 341 QLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 384


>gi|38174254|gb|AAH60826.1| GOLGA3 protein [Homo sapiens]
          Length = 843

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 528 EQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           E      E    ++ E       +L ++L+    +        ++     +Q  Q  L L
Sbjct: 646 EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTL 705

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGE-----AEKTAILISILHEVHIQIHQIESQEAMIE 639
            +R + L   ++E    + Q+T   E      +    L +   E+  ++ +++ + A  E
Sbjct: 706 LQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASRE 765


>gi|21450705|ref|NP_659436.1| leucine-rich repeat-containing protein 45 [Homo sapiens]
 gi|74760765|sp|Q96CN5|LRC45_HUMAN RecName: Full=Leucine-rich repeat-containing protein 45
 gi|15559488|gb|AAH14109.1| Leucine rich repeat containing 45 [Homo sapiens]
 gi|325463153|gb|ADZ15347.1| leucine rich repeat containing 45 [synthetic construct]
          Length = 670

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 91/280 (32%), Gaps = 9/280 (3%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                   +L+  +      L +R+ +       +        L++     +   L    
Sbjct: 316 EQKAQDLGELLATAEQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQ 375

Query: 425 SQAIRDRLQ-QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              +  + + Q  Q + T         +   R    +       +      + S+   ++
Sbjct: 376 VDELERKFRCQQEQLFQTRQEMTSMSAELKMRAIQAEERLDMEKRRCRQSLEDSESLRIK 435

Query: 484 E-AALLLTLINHPAILQEQYQELADIRYD-NNELQKL-WSFLFSDFVEQKYFLPEEIHQR 540
           E   +   L      +QE+ Q L   R     EL ++  + L      ++  +  +   R
Sbjct: 436 EVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKAAALSERGQAEEELIKAKSQAR 495

Query: 541 LCERG-FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           L E+     L  +L    +               V +   +   L  +   L R+ EE++
Sbjct: 496 LEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQ 555

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +++    +  + E+ A +  +  E+  Q  +++++ A  E
Sbjct: 556 QEL----SLKDQERVAEVSRVRVELQEQNGRLQAELAAQE 591


>gi|71650179|ref|XP_813792.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70878711|gb|EAN91941.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 507

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 65/208 (31%), Gaps = 22/208 (10%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
               ++ +     +     +      Q+   +   ++   +  +       E A L  L+
Sbjct: 211 GIKDEEVMLRARAFLDGEAQRLAAPWQQYTERDETETGNGRIAVENATPRNERAELQALL 270

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                 +   +++       +EL +L   L      ++     E+          EL   
Sbjct: 271 RERE--EYFAEQI---ELKEHELTQLRRALQHAEANEEKLTEAEVR-------ITELESC 318

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           L  +  +  +W    + N ++  +   Q + +Y             E+   ++ +    +
Sbjct: 319 LAEKEEELYMWKGNIDKNPLEASEE-TQQVKMYFHTGQ--------EELCDRIESPKNED 369

Query: 613 KTAILISILHEVHIQIHQIESQ-EAMIE 639
               L   L E   ++ +++ Q EA  E
Sbjct: 370 IINTLQRELSETQAKLREMQQQWEASRE 397


>gi|332865692|ref|XP_003318566.1| PREDICTED: huntingtin-interacting protein 1-like [Pan troglodytes]
          Length = 1037

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 20/214 (9%), Positives = 74/214 (34%), Gaps = 3/214 (1%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             ++   +F    +             +        +   + S +K +L    +  +  +
Sbjct: 343 FDNKFDDIFGSSFSSDPFNFNSQNGVNKDEKDHLIERLYREISGLKAQLENMKTESQRVV 402

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-HQRLCERGF 546
           L    +   +  E  ++    +   ++ + L + L     +++     +     +  +  
Sbjct: 403 LQLKGHVSELEAELAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQ 462

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
               +    + + + L     +    +     +Q     +    L R+K+E+E  + +++
Sbjct: 463 ANEQRYSKLKEKYSELVQNHADLLRKNAEVT-KQVSMARQAQVDLEREKKELEDSLERIS 521

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +G+  KT   + +L  +  ++   + +  +++G
Sbjct: 522 DQGQR-KTQEQLEVLESLKQELATSQRELQVLQG 554


>gi|328781881|ref|XP_393277.3| PREDICTED: hypothetical protein LOC409783 [Apis mellifera]
          Length = 970

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +    E +++L++ ++   + +    A I  +++   +  A  +      RQ+ E E ++
Sbjct: 19  KESLEERVQELEQALQAERIAAQRDRATITKLQRQINKREATQRDVERERRQRMEAEARV 78

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            + TA+ E  ++      +H +  ++ ++E  
Sbjct: 79  REATAEAERARS-----RVHHLQRELARMEET 105



 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 78/253 (30%), Gaps = 23/253 (9%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           E         +   +        ER   +          +    R    + +    +Q  
Sbjct: 13  EKSDPAKESLEERVQELEQALQAERIAAQRDRATITKLQRQINKREATQRDVERERRQRM 72

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS--LVKGKLSKKPSLREAALLLTLINH 494
           +             +  +R    +    R+ ++S  L++ K   +   +E   L   +++
Sbjct: 73  EAEARVREATAEAERARSRVHHLQRELARMEETSRGLLQHKHRAEQLKQEKTALT--LSY 130

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
            A + +   +++ ++ +N  ++     L +    + +     +  RL       L  +  
Sbjct: 131 EARVHQYQAQISKLQLENESMRGQLRGLEAACAGEVH---AALVARL-----ATLETEHA 182

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSRQKEEIEKQ-------IA 603
              RDA       E  + DV     +AL     L +    L R+  E+E Q       +A
Sbjct: 183 ALARDADAQRRQYERCLDDVANQVVRALLSQKGLREEIGALQRRIRELEAQNRALSGLLA 242

Query: 604 QVTAKGEAEKTAI 616
           Q    G   +   
Sbjct: 243 QAANPGSPTELIQ 255


>gi|255982783|emb|CAP08941.1| fish virus induced TRIM protein [Oncorhynchus mykiss]
          Length = 554

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 38/90 (42%)

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
           F E  K+L    +    + ++ +A + D  Q + + +   +R     ++    +++    
Sbjct: 213 FQEREKELKELQQAVESFKSSAQAAVEDCDQIFTKLIRSIERRSSEVKELIRAQEKAQVS 272

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQE 635
            A+G  E+    I+ L +   ++ Q+   E
Sbjct: 273 QAEGLLEQLKQEIAELRKRSTELEQLSHTE 302


>gi|294489339|ref|NP_001170944.1| ventricular myosin heavy chain [Oryzias latipes]
 gi|255683278|dbj|BAH95820.1| ventricular myosin heavy chain [Oryzias latipes]
          Length = 1938

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 98/272 (36%), Gaps = 15/272 (5%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            + F++     A  +   + L    +   +E  +       E+  L    + C   IK++ 
Sbjct: 856  EEFLKLKEAYAKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLCDAEERCEGLIKNKI 915

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 ++ + +RL +  ++   E +   R  +       +      L  + + K K + +
Sbjct: 916  QLEAKAKELSERL-EDEEEMNAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATE 974

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537
                    +  L    A L +   +L   +     LQ+       D    E K     ++
Sbjct: 975  NK------VKNLTEEMAALDDIIAKLTKEK---KALQEAHQQTLDDLQSEEDKVNTLTKL 1025

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +L ++   +L   L+++ +              D++   +  + L    + L  + ++
Sbjct: 1026 KAKLEQQ-VDDLEGSLEQEKKIRMDLERAKRKLEGDLKLAQESVMDLENDKQQLEERLKK 1084

Query: 598  IEKQIAQVTAKGEAEKT--AILISILHEVHIQ 627
             + +I+Q+ +K E E++  A L   L E+  +
Sbjct: 1085 KDFEISQLNSKIEDEQSIIAQLQKKLKELQAR 1116



 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 90/291 (30%), Gaps = 30/291 (10%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               R     A       +   V   WK++ E         + E               + 
Sbjct: 1433 DVERSNAVAATLDKKQRNFDRVLAEWKQKYEESQCELESSQKEARSLSTELFKLKNSYEE 1492

Query: 421  RYYYSQAIRDR---LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
               + + ++     LQ+       +    G+   +  + R Q    +  +QS+L + + S
Sbjct: 1493 ALEHLETLKRENKNLQEEISDLTEQLGEGGKTLHELEKVRKQLEQEKSEIQSALEEAEGS 1552

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    E+ +L T +    I  E  ++L++                 + +EQ     +  
Sbjct: 1553 LEHE--ESKILRTQLEFNQIKAEMERKLSE---------------KDEEMEQSKRNMQRT 1595

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
               L      E   + +       +     E  I  + Q  +QA    K+ + +    ++
Sbjct: 1596 IDTLQSSLEAECRSRNEALRIKKKMEGDLNEMEIQ-LSQANRQAAEAQKQLKSIHAHLKD 1654

Query: 598  IEKQIAQVTAKGEA--------EKTAILIS-ILHEVHIQIHQIESQEAMIE 639
             + Q+ + +   +         E+   L+   L E+   + Q E    + E
Sbjct: 1655 CQIQLDESSKGNDDLRENMAIVERRNTLLQAELEELRAALEQTERSRKLAE 1705



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 67/217 (30%), Gaps = 23/217 (10%)

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGK 475
            D   R    +  + +L Q  Q+                + + + +   + LM        
Sbjct: 1380 DAIQRTEELEEAKKKLAQRLQEAEEAVEAVNAKCSSLEKTKHRLQNEIEDLMVDVERSNA 1439

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            ++     ++      L       Q+  +   ++     E + L + LF            
Sbjct: 1440 VAATLDKKQRNFDRVLA---EWKQKYEESQCELESSQKEARSLSTELFKL---------- 1486

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                   +  + E L+ L+   R+              + +G +    L K  + L ++K
Sbjct: 1487 -------KNSYEEALEHLETLKRENKNLQEEISDLTEQLGEGGKTLHELEKVRKQLEQEK 1539

Query: 596  EEIEKQIAQVTAKGEAEKT--AILISILHEVHIQIHQ 630
             EI+  + +     E E++         +++  ++ +
Sbjct: 1540 SEIQSALEEAEGSLEHEESKILRTQLEFNQIKAEMER 1576


>gi|242024286|ref|XP_002432559.1| eps-15, putative [Pediculus humanus corporis]
 gi|212518019|gb|EEB19821.1| eps-15, putative [Pediculus humanus corporis]
          Length = 1098

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 49/153 (32%), Gaps = 20/153 (13%)

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE----EIHQRLCERGFGELLKQLDRQ 556
             + ++   Y N EL+ + + +     E+     +    E   ++       L  ++D  
Sbjct: 305 VEEVVSAPTYSNPELELIATDIDKLVKEKNILEADIAQKEADIKIKNSEVKNLQSEVDTL 364

Query: 557 VRDAGLWSATTEANIVDVRQ-----------GYQQALALYKRFRLLSRQKEEIEKQIAQV 605
                            +               +Q  +L  +   L+ +K+E+E    + 
Sbjct: 365 AATLKQLENQKGEAQKRLNDLKNQVEKLKSQAAEQEESLKSQETELNSKKQELENLKQEE 424

Query: 606 T-----AKGEAEKTAILISILHEVHIQIHQIES 633
           T      +   +    L   L E  +QI Q+++
Sbjct: 425 TRLEKLQEENKKLLENLSQNLQESQLQISQVKA 457


>gi|73960926|ref|XP_864487.1| PREDICTED: similar to Lamin A/C (70 kDa lamin) isoform 5 [Canis
           familiaris]
          Length = 615

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 101/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   +  +LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVTKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         + E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LADKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|307564635|ref|ZP_07627168.1| ATP-dependent chaperone protein ClpB [Prevotella amnii CRIS 21A-A]
 gi|307346659|gb|EFN91963.1| ATP-dependent chaperone protein ClpB [Prevotella amnii CRIS 21A-A]
          Length = 863

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 57/154 (37%), Gaps = 16/154 (10%)

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           +  +     R+  ++   L     +    ++  +PEE+   +  R     +++   +  +
Sbjct: 374 KLSERYISDRFLPDKAIDLMDEAAAKLRMERDSVPEEL-DEITRRLKQLEIEREAIKREN 432

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLL-------SRQKEEIEKQIAQVTAKGEAE 612
                A  + +I ++R+      A ++  R L        ++ E ++ +  +   +G  E
Sbjct: 433 DEDKMALLDKDIAELREQEHSFRAKWENERALVNKIQQDKQEIEHLKYEAERAEREGNYE 492

Query: 613 KTAI--------LISILHEVHIQIHQIESQEAMI 638
           + A         L   +  +  Q+   +  EAM+
Sbjct: 493 RVAEIRYSKLKALEDNIQNIKKQLLSAQGNEAMV 526


>gi|301769015|ref|XP_002919904.1| PREDICTED: envoplakin-like [Ailuropoda melanoleuca]
          Length = 2033

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 79/239 (33%), Gaps = 39/239 (16%)

Query: 412  INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
               +  + +++  S  +   +  L  +     +G GR  ++  R + ++   +R      
Sbjct: 1250 YKEVTQEVVKHERSPEVLREIDHLKAQLNELVNGSGRAQEQLIRLQGERDEWKRERSKVE 1309

Query: 472  VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
             K    +     +  +L                         E ++L   +      QK 
Sbjct: 1310 TKTVNKEVVRHEKDPVLE-----------------------KEAERLRQEVRE--AAQKR 1344

Query: 532  FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRF 588
               E++   L  R    LL++   + +        ++ +     D  +  Q       R 
Sbjct: 1345 RAAEDLVHELQNRYL--LLERRRPEEKVVVQEVVVSQKDPKLREDHSRLSQSLDEEAGRR 1402

Query: 589  RLLSRQKEEIEKQIAQVTA----KGEAEKTAILISILHEVHIQIHQIES-----QEAMI 638
            R L R+ +++   + +  +    + +  K   L   L ++ ++I ++E      QE +I
Sbjct: 1403 RQLEREVQQLRASVQEKESLLSFQEDRSKKLALERELRQLTLRIQELEKRLPVVQEKII 1461


>gi|255983027|emb|CAP08978.1| fish virus induced TRIM protein [Oncorhynchus mykiss]
          Length = 382

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 37/90 (41%)

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
           F E  K+L    +    +  + ++ + D  Q + + +   +R     ++    +++    
Sbjct: 213 FQEREKELKELQQAVESFKRSAQSAVEDSDQIFTELIRSIERRSSEVKELIRAQEKAQAS 272

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQE 635
            A+G  E+    I+ L +   ++ Q+   E
Sbjct: 273 QAEGLLEQLKQEIAELRKRSTELEQLSHTE 302


>gi|241746790|ref|XP_002405593.1| ecotropic viral integration site, putative [Ixodes scapularis]
 gi|215505876|gb|EEC15370.1| ecotropic viral integration site, putative [Ixodes scapularis]
          Length = 854

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/256 (10%), Positives = 78/256 (30%), Gaps = 23/256 (8%)

Query: 401 RAELEIHLKNCINHIKDQKLR----YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
                      I  I    L+          +   L+   ++  ++      Y    A  
Sbjct: 447 MDLFLSEGMEMIFRIAIAILQFCKEDILQLDMEGMLRYFQKEMPSKCETDPDYLINLALQ 506

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
                   + ++      K+ +   + E   L  L     +L+++ + L      +   +
Sbjct: 507 VKYNSKKIKKLEKEYTALKVKEHEDMVE---LRRLRTENRLLRQRIEHLEQES-SSLADR 562

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFG--ELLKQLDRQVRDAGLWSATT---EANI 571
            +   +      +  ++ +     L ++     + L++    + +           ++  
Sbjct: 563 LIQGQVVRAQEAEDNYVIKRELAALRQQELSVQQELERARLHITELHQAQTQPPSLDSQT 622

Query: 572 VDVRQGYQQALAL--------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
            D+ +  Q  L          ++  R L ++ +E+E++  +          A L   L  
Sbjct: 623 EDLLKSLQDELVAVKLREAEGHETTRGLRQRIQELEEENKRHREVTPNNSVATLQEELIA 682

Query: 624 VHIQIHQIESQEAMIE 639
           V   + + E+  +M E
Sbjct: 683 VK--LREAEANLSMKE 696


>gi|159126497|gb|EDP51613.1| myosin type II heavy chain, putative [Aspergillus fumigatus A1163]
          Length = 2405

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 101/311 (32%), Gaps = 29/311 (9%)

Query: 356  GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            G DP  +     K  F   ++  L        R    +  +      +  I  K      
Sbjct: 835  GLDPAWYRVGRTKVFFRAGVLAELEEQRDQLIRTIMTQFQSAARGFIQRRISNKRLYRAE 894

Query: 416  KDQKLR---YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
              + ++     Y    R+   +LF +            +   R    K    ++ Q    
Sbjct: 895  ATRIIQHNFQVYLDMKRNPWWRLFSRMKPLLGETRTANEVKKRDEKIKELEAKIKQDIAE 954

Query: 473  KGKLSKKPSLREAALLLT---LINHPAILQEQYQELADIRYDNNEL-QKLWSFL------ 522
            + KL ++    E  +      L +  A+  ++ +    ++    EL +KL   +      
Sbjct: 955  RQKLDEERRRTEIEIQKIQHTLESERALALDKEEIFKRLQLREIELTEKLAGAIADQESL 1014

Query: 523  ---FSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVR--- 575
                   +  K    E++ QR+ +    GE++++L+ + RD        +  + + R   
Sbjct: 1015 EDQLDTLIAAKKKADEQLSQRITQLEQAGEIIERLEAEKRDLQSRLDVLDRQLEEARSSV 1074

Query: 576  -------QGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                   +   Q + + +    L  R+ +++E ++ +     +  K A     L     Q
Sbjct: 1075 AEQEARVKELGQEIKMLQSHLSLKDRKIQDLEAKLLKTDQDLDI-KLARTSKDLELSKKQ 1133

Query: 628  IHQIESQEAMI 638
            I  +  +   I
Sbjct: 1134 IKDLVEENRSI 1144



 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/279 (9%), Positives = 82/279 (29%), Gaps = 7/279 (2%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +  +R                  +       +       D   +    L+   + ++ + 
Sbjct: 1159 EEMLRRKESEIAVLRNDTKKHQEEKEHLETEKASLSARHDNMQKRLRELQAEADAMRSE- 1217

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    + + D  + L +K   +            + +D K    +       + +    
Sbjct: 1218 -RSQLEREVADVKKLLEEKISEDAEAGESRKLLEQQIQDLKNQLFQAQADLSRERQSRDD 1276

Query: 480  PS-LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--E 536
               L E  L      + ++ + +     ++    + L++      +    +K    E  +
Sbjct: 1277 VQMLAEHNLAELRDKYASLNESKIIIEKEMYIQQDTLRRATEARAAAEKSRKELQTELIK 1336

Query: 537  IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            +  R  +     L  + + +       +   ++   D+ +  +Q   + +    LS + +
Sbjct: 1337 LRDRFTKVESARLNAEAEIERNVKKQANERLDSVRKDLEEKARQLEDVEEERSRLSLRVQ 1396

Query: 597  EIEKQIAQVT--AKGEAEKTAILISILHEVHIQIHQIES 633
            E+   IA+         +    L   L  +  ++   E+
Sbjct: 1397 ELTNAIAESENFRIRHDQHKERLERELVTLKGRLTASEN 1435



 Score = 37.6 bits (85), Expect = 6.3,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 80/241 (33%), Gaps = 12/241 (4%)

Query: 409  KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
            +           +    + +   ++ L      +         K  +             
Sbjct: 1065 RQLEEARSSVAEQEARVKELGQEIKMLQSHLSLKDRKIQDLEAKLLKTDQDLDIKLARTS 1124

Query: 469  SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
              L   K   K  + E   +   I+  +     Y+E   +R   +E+  L +       E
Sbjct: 1125 KDLELSKKQIKDLVEENRSIRQQISDLSSTSTGYEE--MLRRKESEIAVLRNDTKKHQEE 1182

Query: 529  QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----AL 584
            +++   E+           + L++L  +        +  E  + DV++  ++ +      
Sbjct: 1183 KEHLETEKASLSARHDNMQKRLRELQAEADAMRSERSQLEREVADVKKLLEEKISEDAEA 1242

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA----ILISI--LHEVHIQIHQIESQEAMI 638
             +  +LL +Q ++++ Q+ Q  A    E+ +     +++   L E+  +   +   + +I
Sbjct: 1243 GESRKLLEQQIQDLKNQLFQAQADLSRERQSRDDVQMLAEHNLAELRDKYASLNESKIII 1302

Query: 639  E 639
            E
Sbjct: 1303 E 1303



 Score = 37.6 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 91/291 (31%), Gaps = 19/291 (6%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +                 ++   + E E       +  A L   L++  +   ++ L   
Sbjct: 2017 KETSMEQTRLKYQREFSTLNNELEMEREKVLNVRSE-NARLREELEDLRSKWDNEVLNSS 2075

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                 + R++   Q   T          +            R +++S       +    +
Sbjct: 2076 TWAKEKARMEITLQDVTTSRDEAVNAHNEAQGRVVSLLSQVRSLRTSFDDITAERDTLFK 2135

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDN----NELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            E  +L   +       E+ +ELA     +      + +    L S   +Q+      + +
Sbjct: 2136 EKKMLEARLAE---AAERLEELAKGESPSMRSAASMDRELLELKSKLAQQEDVSAAAVGK 2192

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKR--------FRL 590
                      +++     R+A       +A +   +++   + + L  +         R 
Sbjct: 2193 MRRAEALVTEMQKEVTAEREANAQLFKDKAALEKQLKEAQLRCVDLETKSYSTGSQDVRF 2252

Query: 591  LSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQEAMIE 639
            L ++ +E+E  + +   K  +E+     +   + ++  Q+ + +   A +E
Sbjct: 2253 LHKRIKELETHLEEQENKHSSEQRSLRNVDRTVKDLQSQLERRDKLNAQLE 2303


>gi|88682926|gb|AAI05547.1| CUX1 protein [Bos taurus]
          Length = 675

 Score = 41.4 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 98/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 99  DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 158

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     +           
Sbjct: 159 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQTLQTALEKTRT 218

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +I    +E++ + + L   +   E      E + ++L        L   
Sbjct: 219 ELFDLKTKYDEEITAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 278

Query: 554 DRQVRDAGL------------WSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++  D                 A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 279 IQKAPDVEQAIEVLTRSSLEAELAAKEREIAQLVEDVQRLQANLSKLRENSASQISQLEQ 338

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 339 QLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPAEGAG 382


>gi|329961410|ref|ZP_08299533.1| ATP-dependent chaperone protein ClpB [Bacteroides fluxus YIT 12057]
 gi|328531887|gb|EGF58710.1| ATP-dependent chaperone protein ClpB [Bacteroides fluxus YIT 12057]
          Length = 864

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 76/273 (27%), Gaps = 41/273 (15%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + +  +DM              +    +   +K     I        
Sbjct: 220 RILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERLKAVINEVKKSEGDI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E    + ++N P  L                   +   L   +    +        R+ +
Sbjct: 328 ERRFQIVMVNEPDTLSTI---------------SILRGLKERYENHHHV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + D        +  I  + +    A  L      +  + +EI ++I 
Sbjct: 366 DAIIAAVELSNRYITDR----FLPDKAIDLMDEA---AAKLRMEVDSVPEELDEISRKIK 418

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           Q+  + EA K       L ++  ++ +++ QE+
Sbjct: 419 QLEIEREAIKRENDKPKLEQIGKELAELKEQES 451



 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 69/212 (32%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++    +      +  +++    + +      +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVMVNEPDTLSTISILRGLKERYENHHHVRIKDDAIIAAVELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      +     +          +   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDKPKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           +     L     + +    +  +Q    L  + +    + E ++ +  +   +G+  K  
Sbjct: 437 EQIGKELAELKEQESSYKAK--WQSEKTLVNKIQQNKIEIENLKFEADKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L   + E   ++H ++  +AMI+
Sbjct: 495 EIRYGKLQALNKEIEETQQKLHGMQGDKAMIK 526


>gi|322374006|ref|ZP_08048540.1| replicative DNA helicase [Streptococcus sp. C150]
 gi|321276972|gb|EFX54043.1| replicative DNA helicase [Streptococcus sp. C150]
          Length = 453

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 44/143 (30%), Gaps = 6/143 (4%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S   + ++  +  + E ++L  +  +P  L    + +    +     + ++  + +    
Sbjct: 2   SEPQELRVQPQDLVAEQSVLGAIFINPDKLIAVREYIEADDFYKYSHRVIFKAMVTLSDR 61

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            +      +   L ++        L      + L             + Y + +A     
Sbjct: 62  NEAIDATTVRTILDDQ------DDLQNIGGISYLVDLVNSVPTSANAEYYAKIVAEKAML 115

Query: 589 RLLSRQKEEIEKQIAQVTAKGEA 611
           R +  +  E   Q  + + + + 
Sbjct: 116 RRIISRLTETVNQAYEGSTESDE 138


>gi|317052010|ref|YP_004113126.1| chromosome segregation protein SMC [Desulfurispirillum indicum S5]
 gi|316947094|gb|ADU66570.1| chromosome segregation protein SMC [Desulfurispirillum indicum S5]
          Length = 1150

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 91/303 (30%), Gaps = 22/303 (7%)

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
             V    G  P    R    +  E  +  +               +    ++ +EL    
Sbjct: 542 YLVEKFDGTTPQILTRQQPASPIEGAVPVAQLCQAAPGHHIALPGNLYYAEQASELCRRY 601

Query: 409 KNCINHIKDQKLRYYYSQAI----RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
              I       +   Y  +      D         +   +      +   +  D      
Sbjct: 602 PGQIFADASGTV---YRDSCCIGSADLSAAQALDVLDNIAHLEEQEQALLKQEDDLTRRL 658

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
            L Q  + +   + +    E A L  L+   A   ++ + +      + EL         
Sbjct: 659 DLSQEQMQQVFAAVQEQQAECARLAPLVEAKAAAIQEQKAIISRVEKHLELMNRERQRIE 718

Query: 525 DFVEQKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
              E+     + +++ L E G       E ++ L   +          +A + + R    
Sbjct: 719 QRQEESRQQIQSLNEELKEHGNRKQDLEEEIEDLTHSIEHLEPQLEDDQAALGEERVRLA 778

Query: 580 QALALYKRFRLL----SRQKEEIEKQ----IAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +A  + +  R +     R+  E++++    + ++    + E T+     L  +  ++ +I
Sbjct: 779 RAEEVLQSDRNVLEEKHRKLAEVKQRSQDMLQRLEEHRQRESTSKT--ELQSIEKRLEEI 836

Query: 632 ESQ 634
           ++Q
Sbjct: 837 DTQ 839


>gi|313247124|emb|CBY35949.1| unnamed protein product [Oikopleura dioica]
          Length = 1701

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 100/294 (34%), Gaps = 26/294 (8%)

Query: 357  EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            ED  + ++   +   + +   +     +  +     R+F   ++     +  KN ++   
Sbjct: 1076 EDQFAELKMKHEEQEKAISDSAATKARLNTEYNELRRTFEEKEQINSQLMRQKNSVSQAN 1135

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            D+ +R      I+ +     Q+ +++ +     W+        +   +       + G+L
Sbjct: 1136 DE-IRRSLDDEIKAK--NELQRQLSKSNSESAQWRTKYETDAVQRTEELEDAKKKLSGRL 1192

Query: 477  SKKPSLREAALLLT--LINHPAILQEQYQELA-DIRYDNNELQKL--WSFLFSDFVEQKY 531
            S+     EAAL     L      LQ + ++L  ++   N     L      F   +E+  
Sbjct: 1193 SEAEESVEAALAKCSSLEKSKGRLQSEIEDLTVELERANAAAGALEKKQRSFDKILEENK 1252

Query: 532  FLPEEIHQRLCER----------------GFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
               +EI+  L +                  + E +  L+   R+              V 
Sbjct: 1253 VKQDEINAELEKAQKDSREASNEVFKMRNAYEEAVDCLESSKRENKQVQEEIADLTDQVA 1312

Query: 576  QGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHEVHIQ 627
            +G +    L K  R +  ++ E+   + +  A  + E  KT  +   L ++  +
Sbjct: 1313 EGAKSISELEKAKRNIEVERNELAASLEETEAAVESEEAKTLRITVELQQIKNE 1366


>gi|269126405|ref|YP_003299775.1| DNA repair protein RecN [Thermomonospora curvata DSM 43183]
 gi|268311363|gb|ACY97737.1| DNA repair protein RecN [Thermomonospora curvata DSM 43183]
          Length = 575

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                  ++  RL E G+  L+     ++             +  V++   +  AL +++
Sbjct: 273 DHDPALGQLADRLAEAGY--LISDAATELAAYAESVEADPIRLAAVQERRAELNALTRKY 330

Query: 589 -RLLSRQKEEIEKQIAQ-VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              L       ++  A+    +G+ E+   L +   E+  ++ ++ ++
Sbjct: 331 GPTLEDVLAWAQRSAARLAELEGDDERIERLRAEQAELEQRLGELAAE 378


>gi|296815304|ref|XP_002847989.1| dynactin [Arthroderma otae CBS 113480]
 gi|238841014|gb|EEQ30676.1| dynactin [Arthroderma otae CBS 113480]
          Length = 1358

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 72/248 (29%), Gaps = 33/248 (13%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              ++ +L+ + +K   +           A     +   Q+L +    + +       + 
Sbjct: 304 LDDLKTKLKIMEKKRGEDREKLKMVETYRAERDKFETIIQKLREKYQPQQQEITTLRKQL 363

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                 +     +  E    L     D    +++   + +++   K+   E   +    R
Sbjct: 364 KEAEYRVEEVERLQAEHESILEMAALDREMAEEVAESIKAEYEALKFRTEELELEVEVLR 423

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY--------QQALALYKRFRLLSRQKE 596
              + L Q+      +       E     +R+          QQ   L  + + L  + +
Sbjct: 424 EENDQLGQVMSPEEKSSQGWLQMERTNERLREALIRLRDMTQQQEADLRDQVKELEEELK 483

Query: 597 E------------------------IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ-I 631
           +                        +++Q+  + A+   E+         E   ++   I
Sbjct: 484 DYNNLKAQYESTKEKLLESEANMEDLKQQVEALGAEEMIEELTEKNMQYQEEVNELKAII 543

Query: 632 ESQEAMIE 639
           E  E++ E
Sbjct: 544 EDLESLKE 551



 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 73/226 (32%), Gaps = 22/226 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +    RL+ + Q+   +     +  ++  +  +         +  L++ + + +   ++
Sbjct: 453 LREALIRLRDMTQQQEADLRDQVKELEEELKDYNNLKAQYESTKEKLLESEANMEDLKQQ 512

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-E 543
              L          +E  +EL +      E       +  D    K    E     +  E
Sbjct: 513 VEALG--------AEEMIEELTEKNMQYQEEVNELKAIIEDLESLKELNDELELNHMESE 564

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E +   +    +     +  +A I D+     +   L    +          +QI 
Sbjct: 565 KQLQEEIDFREGIYHEQNRKISQQDAVIEDLEYTLSKFRELVSTLQTDLEDMR-ASQQIT 623

Query: 604 QVTAKGEAEKTAILI------------SILHEVHIQIHQIESQEAM 637
           +  A   + ++  ++            + +  + +++ ++E++E+ 
Sbjct: 624 ETEATDLSMRSRAMMDLNMKLQASAAKAQVKSIDVELGRMEAEESA 669


>gi|260589331|ref|ZP_05855244.1| ATP-dependent chaperone protein ClpB [Blautia hansenii DSM 20583]
 gi|260540412|gb|EEX20981.1| ATP-dependent chaperone protein ClpB [Blautia hansenii DSM 20583]
          Length = 887

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 12/140 (8%)

Query: 498 LQEQYQELADIRYDNNELQKLW----SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
           L+E+Y+    ++  ++ L         ++   F+  K     +    L +     +  +L
Sbjct: 376 LKERYEVFHGVKITDSALVAAATLSDRYISDRFLPDKAIDLVDEACALIKTELDSMPTEL 435

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           D ++R   +     EA +        Q      R   L ++  E+        A+ + EK
Sbjct: 436 D-EMRRKIMQMEIEEAALKKENDRLSQD-----RLVALQKEMAELRDSFNAQKAQWDNEK 489

Query: 614 TAILISILHEVHIQIHQIES 633
           +   +  L ++  QI  + +
Sbjct: 490 S--TVERLQKLREQIEDMNN 507


>gi|167754866|ref|ZP_02426993.1| hypothetical protein CLORAM_00370 [Clostridium ramosum DSM 1402]
 gi|237735402|ref|ZP_04565883.1| replicative DNA helicase [Mollicutes bacterium D7]
 gi|167704916|gb|EDS19495.1| hypothetical protein CLORAM_00370 [Clostridium ramosum DSM 1402]
 gi|229381147|gb|EEO31238.1| replicative DNA helicase [Coprobacillus sp. D7]
          Length = 457

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 61/187 (32%), Gaps = 24/187 (12%)

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
           +  +        E +LL +++       +   +  +  + ++  Q ++  + +   E   
Sbjct: 1   MANREYPHDIEAERSLLGSMLISKDKCIDILNKTVEDDFYDDSHQAIFKAMAAINEEGTP 60

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                +   L +        QLD+      L   +     V   + Y + L      R +
Sbjct: 61  VDVTTVTSYLMDH------SQLDKIGGVDYLLRLSESVPTVAHSEYYLKILHNKATLRRI 114

Query: 592 SRQ------------------KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            R+                   +E EK I +VT    A +   +  ++  V  +++ ++ 
Sbjct: 115 IRETTQIAENAYGDVENIDAFIDETEKTILKVTQDRSAGEFRDIRGVIKSVTDRLNLLQK 174

Query: 634 QEAMIEG 640
            +  I G
Sbjct: 175 IDGNISG 181


>gi|149052969|gb|EDM04786.1| rCG33626 [Rattus norvegicus]
          Length = 1487

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1113 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQSTLDAEIRSRNDAIRIKKKMEG 1172

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1173 DLNEM-EIQLNHSNRMAAEALRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAM 1225

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1226 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1285

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1286 ISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1345

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1346 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1377


>gi|119593485|gb|EAW73079.1| coiled-coil domain containing 18, isoform CRA_b [Homo sapiens]
          Length = 1226

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/253 (9%), Positives = 85/253 (33%), Gaps = 4/253 (1%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ +       +E +++E  + +     +++ +       I D+ +   +K         
Sbjct: 713 RQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELE 772

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
           +          +    + ++++ L       K +LR+   L  ++    +  E  ++   
Sbjct: 773 KLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTT 830

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
           I+    EL++    +     E          +    +     +  LD  +R+        
Sbjct: 831 IKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 890

Query: 568 EANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
              +   + +   +     K+   L+ + +  ++Q+ +        +   +  +  E+  
Sbjct: 891 IIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNE-QEISQLKKEIER 949

Query: 627 QIHQIESQEAMIE 639
              +++  E++++
Sbjct: 950 TQQRMKEMESVMK 962


>gi|114550718|ref|XP_001152791.1| PREDICTED: similar to KIAA0562 protein isoform 2 [Pan troglodytes]
          Length = 857

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 35/132 (26%), Gaps = 5/132 (3%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
               + +         L   ++      P        +  +   L  L   +      + 
Sbjct: 153 DPADFSDESNTASREKLIDHYLGHNSEDPALEGTYARKSDYISPLDDLAFDMYQDPEVAQ 212

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILISILH 622
                    R+  Q+    Y +   L +   +++K   ++ +   +           +  
Sbjct: 213 IIRKLDERKREAVQKERYDYAKK--LKQAIADLQKVGERLGRYEVEKRCAVEKEDYDLAK 270

Query: 623 EVHIQIHQIESQ 634
           E   Q+ Q  ++
Sbjct: 271 EKKQQMEQYRAE 282


>gi|157170252|gb|AAI52763.1| Coiled-coil domain containing 18 [synthetic construct]
 gi|162319080|gb|AAI56746.1| Coiled-coil domain containing 18 [synthetic construct]
 gi|261857986|dbj|BAI45515.1| coiled-coil domain containing protein 18 [synthetic construct]
          Length = 1417

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/253 (9%), Positives = 85/253 (33%), Gaps = 4/253 (1%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            R+ +       +E +++E  + +     +++ +       I D+ +   +K         
Sbjct: 986  RQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELE 1045

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            +          +    + ++++ L       K +LR+   L  ++    +  E  ++   
Sbjct: 1046 KLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTT 1103

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            I+    EL++    +     E          +    +     +  LD  +R+        
Sbjct: 1104 IKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1163

Query: 568  EANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
               +   + +   +     K+   L+ + +  ++Q+ +        +   +  +  E+  
Sbjct: 1164 IIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNE-QEISQLKKEIER 1222

Query: 627  QIHQIESQEAMIE 639
               +++  E++++
Sbjct: 1223 TQQRMKEMESVMK 1235


>gi|312083071|ref|XP_003143708.1| myosin heavy chain [Loa loa]
 gi|307761127|gb|EFO20361.1| myosin heavy chain [Loa loa]
          Length = 1379

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 79/227 (34%), Gaps = 10/227 (4%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +++R  Y    +       +K     +       +    RD      +  + S     LS
Sbjct: 1094 EEIREQYLNMEKKATLLQSEKEEMLIAMDQAERTRKQSERDANEAHTQCNELSAQAESLS 1153

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  EA LL    +    L E        +  +++  +L   L     ++     + I
Sbjct: 1154 SVKKKLEAELLAVQADLDETLNEYKASEERCKAASSDAARLAEQLRQ--EQENSLQNDRI 1211

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKRFRLLSRQKE 596
             + L  +   E+  +LD     A        A +   +R+   +     +R++  ++   
Sbjct: 1212 RKALESQ-LKEMQARLDEAEAAALKGGKKVIAKLESRIRELENELDGEQRRYQETNKSLT 1270

Query: 597  EIEKQIAQV-----TAKGEAEKTAILISILH-EVHIQIHQIESQEAM 637
            + E++I ++       K  AE+T  LI  L  ++  Q  QIE  E +
Sbjct: 1271 KHERRIRELQFQVDEDKKNAERTRDLIEKLQNKLKSQKKQIEEAEEL 1317


>gi|307566137|ref|ZP_07628594.1| Toprim domain protein [Prevotella amnii CRIS 21A-A]
 gi|307345149|gb|EFN90529.1| Toprim domain protein [Prevotella amnii CRIS 21A-A]
          Length = 687

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 81/300 (27%), Gaps = 5/300 (1%)

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + D ++++E         L    +++ H       +      + +           + + 
Sbjct: 82  RKDFVKVLETINR--DLQLNICIERKEHSNPHTMMMKPCKPPLVQPPNQLKKMEGKKWYK 139

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             +     K ++       D         ++   +   S++G+    G           Y
Sbjct: 140 LIEQSFNVKELDYWEQYGIDAKTLQRFHVKSLARYESVSNQGKPFTLGST--HDEPMFGY 197

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
                  ++     L   +G               +    + +  G  DVLSL   G   
Sbjct: 198 SMGKFVKVYRPKSKLRFLYGGEKVNDYVFGFQQLPSKGDVVFITGGEKDVLSLSAHGFNA 257

Query: 294 VVSSL-GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           +  +     + E  +  L      I++ +D D+ G+R A +  D    + +    +    
Sbjct: 258 ICFNSETAQIPENIIEGLQLRFQHIIILYDTDETGVREAKRQTDAFAQYKVLSLTLPLQG 317

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
               +D   F     +    K+++  +                   D   +    +    
Sbjct: 318 GKSEKDISDFFALGNEAKDLKVLLNDMFTNMYAQTMMILQSCEIDYDNPPDASKSVVAVN 377


>gi|301771634|ref|XP_002921232.1| PREDICTED: LOW QUALITY PROTEIN: myosin-8-like [Ailuropoda
            melanoleuca]
          Length = 1939

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1566 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHVRVVESMQSTLDAEIRSRNDAIRLKKKMEG 1625

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1626 DLNEMEIQLNHANRQAAEALRNYRNTQGILKDTQLHLDDAL-----RGQEDLKEQ--LAM 1678

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1679 VERRANLLQAEIEELRATLEQTERCRKIAEQELLDASERVQLLHTQNTSLINTKKKLESD 1738

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1739 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1798

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1799 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1830


>gi|298705748|emb|CBJ49056.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 550

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 63/211 (29%), Gaps = 27/211 (12%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R YY + ++DRL  L ++ + +        +                 + + K +  KK 
Sbjct: 307 RRYYQRVLKDRLTALRKRELADARKQRFAHQN---------------ATHVAKVRQIKKE 351

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ- 539
            L E   L  L     +  E    L+D+       +K+ + L     E        +   
Sbjct: 352 RLEEKLRLARLSQRLHLQDEGRGRLSDL------YKKILTALHRQRKEDDREDAARLKAL 405

Query: 540 ----RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
               +       +  K+    + +    S    A  + + +     L         +R  
Sbjct: 406 HLAWQAQSDDLEKFFKERVELIVEHEQGSGRERAQTMALEERELSDLFRRAEMDYEARLS 465

Query: 596 EEIEKQIAQVTAKGEA-EKTAILISILHEVH 625
            ++E+Q  +  A+     +       L  + 
Sbjct: 466 SQLEQQAVEAAAEERYHAEVQHAYKELLHME 496


>gi|282859984|ref|ZP_06269068.1| Toprim domain protein [Prevotella bivia JCVIHMP010]
 gi|317505549|ref|ZP_07963463.1| toprim domain protein [Prevotella salivae DSM 15606]
 gi|325855581|ref|ZP_08171892.1| Toprim domain protein [Prevotella denticola CRIS 18C-A]
 gi|282587190|gb|EFB92411.1| Toprim domain protein [Prevotella bivia JCVIHMP010]
 gi|315663333|gb|EFV03086.1| toprim domain protein [Prevotella salivae DSM 15606]
 gi|325483795|gb|EGC86755.1| Toprim domain protein [Prevotella denticola CRIS 18C-A]
          Length = 687

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 81/300 (27%), Gaps = 5/300 (1%)

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + D ++++E         L    +++ H       +      + +           + + 
Sbjct: 82  RKDFVKVLETINR--DLQLNICIERKEHSNPHTMMMKPCKPPLVQPPNQLKKMEGKKWYK 139

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             +     K ++       D         ++   +   S++G+    G           Y
Sbjct: 140 LIEQSFNVKELDYWEQYGIDAKTLQRFHVKSLARYESVSNQGKPFTLGST--HDEPMFGY 197

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
                  ++     L   +G               +    + +  G  DVLSL   G   
Sbjct: 198 SMGKFVKVYRPKSKLRFLYGGEKVNDYVFGFQQLPSKGDVVFITGGEKDVLSLSAHGFNA 257

Query: 294 VVSSL-GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           +  +     + E  +  L      I++ +D D+ G+R A +  D    + +    +    
Sbjct: 258 ICFNSETAQIPENIIEGLQLRFQHIIILYDTDETGVREAKRQTDAFAQYKVLSLTLPLQG 317

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
               +D   F     +    K+++  +                   D   +    +    
Sbjct: 318 GKSEKDISDFFALGNEAKDLKVLLNDMFTNMYAQTMMILQSCEIDYDNPPDASKSVVAVN 377


>gi|242009028|ref|XP_002425295.1| discs large protein, putative [Pediculus humanus corporis]
 gi|212509060|gb|EEB12557.1| discs large protein, putative [Pediculus humanus corporis]
          Length = 1793

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 39/374 (10%), Positives = 104/374 (27%), Gaps = 34/374 (9%)

Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
           DVL+   A      +     L + +L         +V   +          +    V+  
Sbjct: 167 DVLASHTA------AVNKLELAQEELGRSKSQYEEVVQERNDAIRERNGLKQQCTAVIMQ 220

Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES--LPLVDMLWKRETENRSFNTPD 399
                R      +   D  S ++     A +++          +   KR TE R+    +
Sbjct: 221 WDIALRER----NEYRDALSKVQQQHDEAVKEINQAMIFKMKTNKDIKRLTEERNAAMHE 276

Query: 400 E------RAELEIHLKNCINHIKDQKLRYYYSQ----AIRDRLQQLFQKYITEHSGYGRY 449
                  R  +   ++   + +  +  +    Q       +  + L  +  T        
Sbjct: 277 YSLIMSERDSVHKEMEKLTDDLSQEIKKNKTLQAQNKDFAEEKKVLSYQMETLKREIQSA 336

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
                +   +    +        K   +     R        I   A  +E+     D  
Sbjct: 337 LHDRDKALKECNDLREKFGEYTAKEDSNTGFKSR--------IEFNAYNRERDNSRKDQT 388

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
             ++  + L+    S                +  +   +L  +L    ++A +     + 
Sbjct: 389 EVSSSTRDLYG--ISQKERMDNLDQANQELDVLRKQLDKLQAELQEATQEAEVSKRRRDW 446

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQ 627
              +  +   +  ++      L ++++     +A+     +   ++       L E+  +
Sbjct: 447 AFNERDKIVLERESIRTLCDRLRKERDRAVSDLAEALRDSDDIKKQRNEASKELKELKEK 506

Query: 628 IHQIESQEAMIEGF 641
           I     +E+ ++ F
Sbjct: 507 IEAQIEKESRVQQF 520


>gi|212540886|ref|XP_002150598.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
 gi|210067897|gb|EEA21989.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
          Length = 737

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 50/420 (11%), Positives = 113/420 (26%), Gaps = 11/420 (2%)

Query: 222 GRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM 281
            R    G S        T             G              R  S+ + L E  M
Sbjct: 66  ARFSDPGPSSITRRPSGTTGLTPAMGRAGIDGRRRSSGAQTPSRPSRRQSAPVFLSETLM 125

Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
           D   + +     V  +    + + + R     S    +    D         A ++    
Sbjct: 126 DPELVGRTEPITVQFTPFRQILDARARRRLVRSGLSDVMNRFDSEKKDLKKAAAEIESLQ 185

Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER 401
              G        S   D + F   +     +   V+   ++           +     + 
Sbjct: 186 KKLG-SYESAQASGAHDNNIFNDNFETILIDDDTVDGTMVMSDSPTFNRYGDAHGLSSDN 244

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
           +           H               + L+ + +          +      R  +   
Sbjct: 245 SASPEETSPITPHTGFSHPVSIMDDQSSEELRMMAEDLAAARK-EKQDLFNEWRKLNPLS 303

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
            ++   +++       K+   R  A L T  +   +L+    EL  + +    +  + + 
Sbjct: 304 STEPEAEATTPPADFMKQIVPRLEAALRTESDLTQVLKATQDELNQMGFSGPNIDAILAQ 363

Query: 522 LFSDFVEQKY-----FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
           +   F   +         E++  R   +   +      RQV +A +     +  + +   
Sbjct: 364 MRDTFESAREELKGYRSEEKLPPRFNGKVILKAFIIHLRQVSNALILEHKAKMTVCEAHD 423

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             +Q       + L+   KE  + +  + + + +AE    +   L EV   + + E   A
Sbjct: 424 SLRQQFD----YTLILLDKERTKVRNFEGSKEDDAEDMLRVRMRLQEVERALKEKEDSIA 479


>gi|189535781|ref|XP_001338362.2| PREDICTED: uncharacterized protein C20orf117 [Danio rerio]
          Length = 1779

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 61/155 (39%), Gaps = 23/155 (14%)

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF---SDFVEQKYFLPEEIHQRLCERGFG-EL 549
           H  +++E  +  ++  Y  +E+++L S +      ++E+  +  +E+ Q+L +      +
Sbjct: 276 HEELVREIEELRSENDYLKDEMEELRSEMLEMRDMYLEEDVYQLQELRQQLDQANKTCRI 335

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--------LALY-------KRFRLLSRQ 594
           L+   ++     +  A T     ++ +  +Q         + L+       K+   L ++
Sbjct: 336 LQYRLKKAERRSIRVAQTGQVDGELIRTLEQDVKVAKDVSIRLHNELDTVEKKRSRLEQE 395

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHE--VHIQ 627
            EE+  ++  +      +     +    E  +  +
Sbjct: 396 NEELRVKLQDLEVA--KQVLQAEMEKARENSLKKR 428


>gi|167533025|ref|XP_001748193.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773313|gb|EDQ86954.1| predicted protein [Monosiga brevicollis MX1]
          Length = 991

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 69/226 (30%), Gaps = 20/226 (8%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--GPSQRLMQSSLVKGKLSKKPSL 482
            + +++ +  L  +   +        +++   R+ +    S+ L  +      L  +   
Sbjct: 201 IRRLKEDIHGLQVELREKEQASALAERQHLHDRETQALKHSRELTAAQNEAVALRNELRT 260

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           +E  L          ++              E +     + ++  E K  L  ++   + 
Sbjct: 261 KEQELAA----RKQTIESLEARFKKEIDHTKESRAAHDRILAELKESKAALEADVRAAMQ 316

Query: 543 ERGF--------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL---- 590
                        E+++ L+   +      A  E     +R  + +  A           
Sbjct: 317 GTAAAEAQITRKDEMIQLLEADTKQRAERIAQLEEKNEALRVQFNELRASSAELEAERNG 376

Query: 591 LSRQKEEIEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           L  +  ++E QI  +    K   E+   L   L E+   +   ++Q
Sbjct: 377 LQNRVADLESQIETSDALRKEADEREGRLQDQLTELADALQATDAQ 422


>gi|124004748|ref|ZP_01689592.1| serine/threonine protein kinases, putative [Microscilla marina ATCC
           23134]
 gi|123989871|gb|EAY29400.1| serine/threonine protein kinases, putative [Microscilla marina ATCC
           23134]
          Length = 1389

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 98/283 (34%), Gaps = 25/283 (8%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           +LP          ++   N   + ++   + +    ++ +      Y+  ++ R  +  +
Sbjct: 683 ALPYYQNSQDIVYQHILENFDTKWSQWNKNTEKEYTNLPEGT----YTFKVKARTAEGSE 738

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
             +T+++                      +   LV    ++    R A L   +  + A 
Sbjct: 739 SLVTQYTFVILAPWYRTFWAYTLYVLGVGLGIFLVMKISTRNHRKRRAILQRKIDENTAK 798

Query: 498 LQEQYQELAD-IRYDNNELQKLW--SFLFSDFVEQKYFLPEEIHQRLC---------ERG 545
           +QEQ + +   ++ +  +  +L     +    ++Q     +E+ Q+           E+ 
Sbjct: 799 IQEQKEIIEASLKTETEKNYRLKSQEKILRKHLDQLNAAQKEVEQKSKMIETQKKKLEKI 858

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             E ++Q D+      +     +  I    +       L+ +   + + K+E+E+ +A+ 
Sbjct: 859 LSEKIEQNDQLQAHEEVMQVQMDKLINAQEELKAANANLHLKEEEMLKSKQEVERALAEA 918

Query: 606 TAKGE---------AEKTAILISILHEVHIQIHQIESQEAMIE 639
             K +          +    L++   E+     ++ SQ   I+
Sbjct: 919 RDKNDMMEAQEEEMRQNMEELLTTQEEIEKTQLELNSQIKAID 961


>gi|157872091|ref|XP_001684594.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68127664|emb|CAJ05768.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 762

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV--------DVRQGY 578
             +       + Q L +    +  K+L +++         T  +I         D+    
Sbjct: 561 KNEPRVDEAAMLQLLADEKVEQTRKKLKQEISKTIREEEKTRKDITQRASKAYHDLCDRL 620

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-----ES 633
           +Q     ++      +KEE E+Q      K   E+ A L S L  +  +  ++     ++
Sbjct: 621 RQETKRTQKEVADRERKEEQERQRELDKIKQAQEQMAELKSRLQSLKKENAELAQLKQDA 680

Query: 634 QEAMIE 639
            +A  E
Sbjct: 681 TQAAKE 686


>gi|62087810|dbj|BAD92352.1| restin isoform a variant [Homo sapiens]
          Length = 1065

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 76/260 (29%), Gaps = 13/260 (5%)

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                D R          +   KD  LR      +R RL+        + S        +
Sbjct: 235 QRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLESNKPAGDVDMSLSLLQEISS 294

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
            + + +   +    + + +K     +    +  +         + +E     + + + N 
Sbjct: 295 LQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANK 354

Query: 514 ELQ---KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
           E      LW       +       EE+      +G G    +               +  
Sbjct: 355 ENSDVIALWKSKLETAIASHQQAMEELKVSF-SKGLGTETAEFAELKTQIEKMRLDYQHE 413

Query: 571 IVDVRQGYQQALALYKRFRL-----LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           I +++       A + +        L +  +E E  +  + +K +  +       L E+ 
Sbjct: 414 IENLQNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAED----QHLVEME 469

Query: 626 IQIHQIESQEAMIEGFGKMS 645
             +++++  E   E F + S
Sbjct: 470 DTLNKLQEAEIKKEKFAEAS 489


>gi|12697534|emb|CAC28360.1| myosin heavy chain [Toxocara canis]
          Length = 1814

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 85/259 (32%), Gaps = 10/259 (3%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR----YYYSQAIRDRL 432
           E+    +   ++  E  S    +E+  +   L+     + D + R          I  ++
Sbjct: 723 EAKIAEEEKARKGLEESSTKLLEEKNAVFGELEEAKGKLSDAEDRLNRLNTLRNDIDKQI 782

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
            +L  +   +        +   +        ++ ++    + + ++     +   + TL 
Sbjct: 783 NELNDRLGDQEDRNADLMRAKKKVETDAENLRKTIEELEGRLQKAETDKQAKDQQIRTLQ 842

Query: 493 NHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           +   +  E   +L   +    E  +KL   L     E K     ++  +L +    +L  
Sbjct: 843 DEMQLQDENIAKLNKEKKHQEEINRKLMEDL--QSEEDKGNHTNKLKGKLEQS-LDDLED 899

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR--QKEEIEKQIAQVTAKG 609
            L+R+ R              +++   +    + ++   +    +K+E E Q      + 
Sbjct: 900 SLEREKRARNDIEKQKRKVEGELKVAQENIDEINRQRHEIESNLKKKEAESQAVATRLEE 959

Query: 610 EAEKTAILISILHEVHIQI 628
           E +    L   L E   +I
Sbjct: 960 EQDLVNKLKKQLKETQGRI 978


>gi|453180|emb|CAA53945.1| lamin A [Rattus norvegicus]
          Length = 640

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 68  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTAL 127

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 128 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 183

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 184 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 229

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 230 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 286

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 287 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 340

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 341 KLALDMEIHAYRKLLEGEE 359


>gi|33876357|gb|AAH01640.1| KIAA0562 protein [Homo sapiens]
          Length = 701

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 35/132 (26%), Gaps = 5/132 (3%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
               + +         L   ++      P        +  +   L  L   +      + 
Sbjct: 153 DPADFSDESNTASREKLIDHYLGHNSEDPALEGTYARKSDYISPLDDLAFDMYQDPEVAQ 212

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILISILH 622
                    R+  Q+    Y +   L +   +++K   ++ +   +           +  
Sbjct: 213 IIRKLDERKREAVQKERYDYAKK--LKQAIADLQKVGERLGRYEVEKRCAVEKEDYDLAK 270

Query: 623 EVHIQIHQIESQ 634
           E   Q+ Q  ++
Sbjct: 271 EKKQQMEQYRAE 282


>gi|73959617|ref|XP_867206.1| PREDICTED: similar to Interferon-induced guanylate-binding protein
           1 (GTP-binding protein 1) (Guanine nucleotide-binding
           protein 1) (HuGBP-1) isoform 3 [Canis familiaris]
          Length = 559

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/264 (8%), Positives = 76/264 (28%), Gaps = 10/264 (3%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDER---AELEIHLKNCINHIKDQKLRYYYSQAIR 429
             + +++   D    +  +  +    +        E            + +   + + + 
Sbjct: 292 AAVQKAIAHYDQQMNQMVKLPTETLQELLDLHRACEKEAIEFFMSNSFKDIDQLFQKDLA 351

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            +L++   ++  ++         +            + Q    K    +    +   L  
Sbjct: 352 AKLEKKRDEFCKQNLQASTDRCSDLLKEIFGPLEDSVKQGVYSKPGGYRLFIQKTQELKK 411

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           T +  P    +  + L     D+ E   +   +            E   +R+        
Sbjct: 412 TYLQKPRKGIQAEEVL-QEYLDSKE--SMTDAILQTDQTLTEKEKEIEVERVKAESAQAA 468

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ---VT 606
            K+L+             E +  +  +   + +    R +LL  Q+  +  ++ +   + 
Sbjct: 469 TKRLEEMQMKNQQIMEQKERSYQEHVKQLTEKME-RDRIQLLEEQERTLALKLQEQARLL 527

Query: 607 AKGEAEKTAILISILHEVHIQIHQ 630
            +G   ++  L + +  +   + +
Sbjct: 528 KEGFQNESKRLHNEIQNLQQNMAR 551


>gi|14590782|ref|NP_142852.1| chromosome segregation protein [Pyrococcus horikoshii OT3]
 gi|18202079|sp|O58687|RAD50_PYRHO RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|3257342|dbj|BAA30025.1| 879aa long hypothetical purine NTPase [Pyrococcus horikoshii OT3]
          Length = 879

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 77/240 (32%), Gaps = 7/240 (2%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
               E   LE  L+     ++++  R    + I D++ ++ ++    +    +  K+   
Sbjct: 469 KEIQEAKALERQLRAEFRKVENELSRLSSLKTIADQIIEIRERLSKINLEDLKRDKEEYE 528

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI-NHPAILQEQYQELADIRYDNNE 514
               +    +    SL K          E+  L   I      L E    L  + +    
Sbjct: 529 LLKSESNKLKGEVESLKKEVNELNDYKNESTKLEIEIDKAKKELSEIEDRLLRLGFKT-- 586

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
                  L     E + F  + I  +  E+   ++L+ L  +  +             D+
Sbjct: 587 ----IDELSGRIRELEKFHNKYIEAKNAEKELRDILESLKDEREELDKAFEELAKIETDI 642

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +   Q   L ++F     +++  +     +  KG   K   L     E+   I +++ +
Sbjct: 643 EKVTSQLNELQRKFDQKKYEEKREKMMKLSMEIKGLETKLEELERRRDEIKSTIEKLKEE 702


>gi|46121919|ref|XP_385513.1| hypothetical protein FG05337.1 [Gibberella zeae PH-1]
          Length = 2066

 Score = 41.4 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 41/364 (11%), Positives = 110/364 (30%), Gaps = 32/364 (8%)

Query: 283 VLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342
            ++      Q +++SL T  T   + ++ +        FD           +++  +   
Sbjct: 10  YVAGHLGLDQPIIASLTTEPTVELVNIILQAVAARAHEFDTLYAEKLETDISLENAVRSN 69

Query: 343 IPGNRVNFVLLSRG-EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER 401
              ++ +   + +  +D +   +       ++  VE+   V    K + +       D+ 
Sbjct: 70  ETRSQTSKATVDKALKDVEEARQQLKNEETKRQSVENELQVFKAKKSDYDAEIKALNDKI 129

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
             L+   +  ++ I+    R                             K++ R+ +   
Sbjct: 130 ETLQSSNRTNLSIIESNNKRDQTITE--------------------ELTKQHQRNVELSR 169

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW-- 519
               L QS             RE +L   L     + ++  + L +        + L   
Sbjct: 170 EITTLQQSEQNARGQLSSAKYREESLQQQL----DLARKNSEWLEN-ELKTKSEESLKYR 224

Query: 520 ----SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
               + +     + +    +    +  E+   E L  +  +  DA +     E       
Sbjct: 225 KEKGARIAELQRQNEDIQSQMDALKRTEQQLRERLDAMQSKADDALVKLQKQEGTHAQTI 284

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           + Y+  L   +R   +S Q  +  ++  +     +        + L  V +++ +     
Sbjct: 285 ESYKHELEDQRRLVEMSDQLSKKHQERVRDLEAEKERLRDNYENELRRVRVELEKERENS 344

Query: 636 AMIE 639
           + +E
Sbjct: 345 SQME 348


>gi|332265066|ref|XP_003281547.1| PREDICTED: cytospin-B isoform 1 [Nomascus leucogenys]
          Length = 987

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 91/280 (32%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   ++  TE+    
Sbjct: 415 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLERLKTENGSLK 474

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   Q    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 475 SHLQGEKQKATQASAVEQTAES--CEVQEMLKVARAEKDLLE--LSCSELRQELLKANGE 530

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 531 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 590

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + E    
Sbjct: 591 VEQHRAVKLHNNQLISELESNVIK----------LEEQKSDLERQLKTLTKQMKEETEEW 640

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 641 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 680


>gi|331082733|ref|ZP_08331856.1| chaperone ClpB [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400352|gb|EGG79994.1| chaperone ClpB [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 863

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 12/140 (8%)

Query: 498 LQEQYQELADIRYDNNELQKLW----SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
           L+E+Y+    ++  ++ L         ++   F+  K     +    L +     +  +L
Sbjct: 352 LKERYEVFHGVKITDSALVAAATLSDRYISDRFLPDKAIDLVDEACALIKTELDSMPTEL 411

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           D ++R   +     EA +        Q      R   L ++  E+        A+ + EK
Sbjct: 412 D-EMRRKIMQMEIEEAALKKENDRLSQD-----RLVALQKEMAELRDSFNAQKAQWDNEK 465

Query: 614 TAILISILHEVHIQIHQIES 633
           +   +  L ++  QI  + +
Sbjct: 466 S--TVERLQKLREQIEDMNN 483


>gi|326922553|ref|XP_003207513.1| PREDICTED: trafficking kinesin-binding protein 2-like [Meleagris
           gallopavo]
          Length = 970

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 29/268 (10%), Positives = 82/268 (30%), Gaps = 22/268 (8%)

Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--SQAIRDRLQQLFQK 438
             +  W +   +            +      +    D   +  Y  +  +R  L +  + 
Sbjct: 119 YENQDWIQSPTHHGHLPEISSPVHDEETFRYVILGTDNVEQKTYSDADMVRHLLAEKDRD 178

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL------- 491
                       K+N    +Q    +  +  +L +    +    ++  LL  +       
Sbjct: 179 LELAARIGQALLKRNHLLTEQNEALEEQLGQTLDQVNQLQHELSKKDDLLRIVSIASEES 238

Query: 492 ---------INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
                    +          Q L  +    ++L++L     +   +  +   E I     
Sbjct: 239 ETDSSCSTPLRFNESFS-VSQGLLQLDILQDKLRELEEENLALRSKACHLKTETITYEEK 297

Query: 543 ERGF-GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE--IE 599
           E+    + +++L +        +        ++ +  ++  +L  +   L  + +E  IE
Sbjct: 298 EQQLVNDCVRELRQTNAQISRITEELSEKSEELVRYQEEISSLLSQIVDLQHKLKEHVIE 357

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627
           K+  ++  +   +    L + LHE+  +
Sbjct: 358 KEELKLHLQASKDAQRQLTAELHELQDR 385


>gi|313242792|emb|CBY39562.1| unnamed protein product [Oikopleura dioica]
          Length = 1910

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 79/238 (33%), Gaps = 25/238 (10%)

Query: 413  NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
                 + LR  Y + +  +     Q+ +++ +     W+        +   +       +
Sbjct: 1319 AKHDHELLREAYDEEVEAK--NELQRQLSKSNSESSQWRTKYETDAVQRTEELEDAKKKL 1376

Query: 473  KGKLSKKPSLREAALLLT--LINHPAILQEQYQELA-DIRYDNNELQKL--WSFLFSDFV 527
             G+LS+     EAAL     L      LQ + ++L  ++   N     L      F   +
Sbjct: 1377 SGRLSEAEESVEAALAKCSSLEKSKGRLQSEIEDLTVELERANAAAGALEKKQRSFDKIL 1436

Query: 528  EQKYFLPEEIHQRLCER----------------GFGELLKQLDRQVRDAGLWSATTEANI 571
            E+     EEI+  L +                  + E +  L+   R+            
Sbjct: 1437 EENKIKQEEINAELEKAQKDSREASNEVFKMRNAYEEAVDCLESAKRENKQVQEEIADLT 1496

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHEVHIQ 627
              V +G +    L K  R +  ++ E+   + +  A  + E  KT  +   L ++  +
Sbjct: 1497 DQVAEGAKSISELEKAKRNIEVERNELAASLEETEAAVESEEAKTLRITVELQQIKSE 1554



 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 85/270 (31%), Gaps = 15/270 (5%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +     +   E    + L      + +           E   L+       + +K +  
Sbjct: 838  EYEEMKKELEIESKRRKQLEQEYSKFIQLKNRLISEFAGETDALQDAEDRYESLMKSKID 897

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                 + + +RL +  ++   + S   R  +   +   +         S + K K + + 
Sbjct: 898  LDGKIKELHERL-EDEEEINVDLSNKRRKLETECKELRKDIDDLEGTLSKVEKEKSTVEA 956

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS--DFVEQKYFLPEEIH 538
             +R              L      +A ++ +   LQ+            E K     +  
Sbjct: 957  DVRTKT---------DELSALEDTIAKLQKEKKALQEAHQQALDDLQAEEDKVNSLSKAK 1007

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             +L ++   +L + ++ + R              D+R   +  + L    + L  + ++ 
Sbjct: 1008 NKLEQQ-VDDLEQSVETEKRSRLDLERLKRKLEGDLRLAQETIMDLENDKQRLEEKLKKA 1066

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            E +  Q++ + E E    L++ L +   ++
Sbjct: 1067 EFEYNQLSTRFEDE--QALVAQLQKKIKEL 1094



 Score = 37.6 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 26/269 (9%), Positives = 88/269 (32%), Gaps = 29/269 (10%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
             ++        +      L   I  + +   +      +    +++ ++   E     + 
Sbjct: 797  IQSNWRAYTTLKDWEWQKLLFKIRPLLNTAEKKAEFDELLKEYEEMKKELEIESKRRKQL 856

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
             ++ ++    K    RL+     +    +    R  +L+ + I+    ++E ++ L D  
Sbjct: 857  EQEYSKFIQLKN---RLISEFAGETDALQDAEDRYESLMKSKIDLDGKIKELHERLEDEE 913

Query: 510  YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE----------------RGFGELLKQL 553
              N +L      L ++  E +    +++   L +                     L   +
Sbjct: 914  EINVDLSNKRRKLETECKELRK-DIDDLEGTLSKVEKEKSTVEADVRTKTDELSALEDTI 972

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEAE 612
             +  ++        +  + D++    +  +L K    L +Q +++E+ +  +  ++ + E
Sbjct: 973  AKLQKEKKALQEAHQQALDDLQAEEDKVNSLSKAKNKLEQQVDDLEQSVETEKRSRLDLE 1032

Query: 613  KTAI--------LISILHEVHIQIHQIES 633
            +               + ++     ++E 
Sbjct: 1033 RLKRKLEGDLRLAQETIMDLENDKQRLEE 1061


>gi|304382824|ref|ZP_07365307.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304336009|gb|EFM02256.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 309

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 21 IGQYVD---WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL 77
          I  Y+     +  K       Y A  P+ ++   S   +  +  ++ +     G  +  +
Sbjct: 16 IADYLHACGIEPAKRYNGYALYHA--PYREDPNASLKVDFRQNLWHDYGTSQGGSIIDLV 73

Query: 78 SALLGCSFIESVQRLAA 94
            + GC+  E++  LA 
Sbjct: 74 VRMQGCNAYEAMAHLAE 90


>gi|301384611|ref|ZP_07233029.1| hypothetical protein PsyrptM_18322 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062064|ref|ZP_07253605.1| hypothetical protein PsyrptK_18931 [Pseudomonas syringae pv. tomato
           K40]
 gi|302130742|ref|ZP_07256732.1| hypothetical protein PsyrptN_05064 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|331017424|gb|EGH97480.1| hypothetical protein PLA106_15355 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 137

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            Q   L  R +   RQ++E+ +Q+     + +      L     ++ +Q+ +
Sbjct: 40  NQIADLQLRLKDSERQRDELTQQLQNANPERDTALLTRLRQENQKLKLQLKE 91


>gi|296228805|ref|XP_002759987.1| PREDICTED: cingulin-like [Callithrix jacchus]
          Length = 1318

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 97/286 (33%), Gaps = 25/286 (8%)

Query: 365  CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             Y + A  ++        D   + E  +   N   +  +            +D       
Sbjct: 993  DYKEKARREVADAQRQAKDWASEAEKTSGGLNRLQDEIQRLRQALQACQAERDTAQLD-- 1050

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + +  RLQ L Q+   +        ++     ++    +  +       +L      R 
Sbjct: 1051 KELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEKVSRLEAELDEEKNTVELLTDRVNRG 1110

Query: 485  A----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDFVEQKY 531
                  L   L+   +  Q+   +   +   N +L+ +L S           S    Q  
Sbjct: 1111 RDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQ 1170

Query: 532  FLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             L E +     E+       ++L+R+V++  +       ++ D +        L  R + 
Sbjct: 1171 LLQERLQAEEREKTVLQSTNRKLERKVKELSIQIEDERQHVNDQKDQ------LSLRVKA 1224

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
            L RQ +E E++I ++   G  +K    +   HEV+ Q+  +I+S E
Sbjct: 1225 LKRQVDEAEEEIERLD--GLRKKAQRELEEQHEVNEQLQARIKSLE 1268



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 74/220 (33%), Gaps = 8/220 (3%)

Query: 425  SQAIRDRLQQLFQK-YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             Q    RL+Q  Q       +          R +  +  ++   +S   + +  K    +
Sbjct: 1026 LQDEIQRLRQALQACQAERDTAQLDKELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEK 1085

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
             + L   L      ++     +   R   +++ +L + L  +   ++    ++I      
Sbjct: 1086 VSRLEAELDEEKNTVELLTDRVNRGR---DQVDQLRTELMQERSARQDLECDKISLERQN 1142

Query: 544  RGFGELLKQLDRQVRDA---GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            +     L   +   + +       +  +     ++   ++   L    R L R+ +E+  
Sbjct: 1143 KDLKTRLASSEGFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERKVKELSI 1202

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            QI +   +   ++   L   +  +  Q+ + E +   ++G
Sbjct: 1203 QI-EDERQHVNDQKDQLSLRVKALKRQVDEAEEEIERLDG 1241



 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 77/247 (31%), Gaps = 9/247 (3%)

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
           ++      +E    +  L       ++ +        +  R  +  +    +        
Sbjct: 687 QSMFQKNKEELRATKQELLQLRMEKEEMEEELGEKIEVLQRELEQARASAGDTRQVEVLK 746

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
           K+  + +++    Q   QS  V G+   +   ++ ++L        +  ++ +EL +  +
Sbjct: 747 KELCQTQEELKELQAERQSQEVAGRHRDRELEKQLSVLR-------VEADRGRELEEQNF 799

Query: 511 D-NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
                LQ+L          +     E              L++   +  +        E 
Sbjct: 800 QLQKTLQQLRQNCEEASKAKMVAEAEAAVLGQRRAAVETTLRETQEENDEFRRRILGLEQ 859

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            + + R       A+  R R   ++ E  ++Q+ +       E+   L +    +  ++ 
Sbjct: 860 QLKETRGLVDGGEAVEARLRDKLQRLEAEKQQLEEALNA-SQEEEGSLAAAKRALEARLE 918

Query: 630 QIESQEA 636
           + +   A
Sbjct: 919 EAQRGLA 925


>gi|31652236|ref|NP_001904.2| protein CASP isoform b [Homo sapiens]
 gi|85681028|sp|Q13948|CASP_HUMAN RecName: Full=Protein CASP
 gi|119570612|gb|EAW50227.1| cut-like 1, CCAAT displacement protein (Drosophila), isoform CRA_a
           [Homo sapiens]
 gi|193784982|dbj|BAG54135.1| unnamed protein product [Homo sapiens]
 gi|208967723|dbj|BAG72507.1| cut-like homeobox 1 [synthetic construct]
          Length = 678

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 98/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 101 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 161 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 220

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 221 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 280

Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 281 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 340

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 341 QLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 384


>gi|66815949|ref|XP_641991.1| hypothetical protein DDB_G0278825 [Dictyostelium discoideum AX4]
 gi|60470033|gb|EAL68014.1| hypothetical protein DDB_G0278825 [Dictyostelium discoideum AX4]
          Length = 905

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 95/285 (33%), Gaps = 12/285 (4%)

Query: 358 DPDSFIRCYGKTAFEKLIVE--SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           DP    R     +   ++     +     +++R  +        ER E E      +   
Sbjct: 153 DPAKMKREMIIESSTIILQSFFRMIHQRKIYQRTIKENKERLEAERLEKERLEAERLEKE 212

Query: 416 KDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           K +  R    +   +RL ++  +    E         +  R   ++   ++L    L K 
Sbjct: 213 KLEAERLEKEKLEAERLEKERLEAERFEKERLESERLEKERLEAERLEKEKLEAERLEKE 272

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQY-QELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           KL  +   +E      L       +    ++L   R +  +L+     L  + +E +   
Sbjct: 273 KLEAERLEKERLEAERLEKERLEAERLEKEKLEAERLEKEKLEA--ERLEKEKLEAERLE 330

Query: 534 PEEI-HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
            E +  +RL +       ++L+++  +A              ++  +  +   +R   L 
Sbjct: 331 KERLEAERLEKEKLEA--ERLEKERLEAERLEKEKLEAERLEKERIENEILEAERLERLE 388

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            +K EIE+   +     E +     +  L E   ++   +  E +
Sbjct: 389 MEKIEIERL--EKQRLQEEQIKEKEMKRL-EKEKRLEHQKELERL 430



 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 108/279 (38%), Gaps = 9/279 (3%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           F   + +  +++ I E+   ++     +    +     E+ E E   K  +   + +K R
Sbjct: 174 FRMIHQRKIYQRTIKENKERLEAERLEKERLEAERLEKEKLEAERLEKEKLEAERLEKER 233

Query: 422 YYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
               +  ++RL  +  +K   E     +   +  R   +K  ++RL +  L   +L K+ 
Sbjct: 234 LEAERFEKERLESERLEKERLEAERLEKEKLEAERLEKEKLEAERLEKERLEAERLEKER 293

Query: 481 SLREAALLLTLINHPAILQEQYQ--ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              E  L    +    + +E+ +   L   + +   L+K    L ++ +E++    E + 
Sbjct: 294 LEAER-LEKEKLEAERLEKEKLEAERLEKEKLEAERLEK--ERLEAERLEKEKLEAERLE 350

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           +   E    E  K    ++    + +   EA  ++  +  +  +   ++ RL   Q +E 
Sbjct: 351 KERLEAERLEKEKLEAERLEKERIENEILEAERLERLEMEKIEIERLEKQRLQEEQIKE- 409

Query: 599 EKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEA 636
            K++ ++  +   E    L  +  E +  +  + E  EA
Sbjct: 410 -KEMKRLEKEKRLEHQKELERLDRERIRAERLEKERLEA 447



 Score = 37.2 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 79/229 (34%), Gaps = 15/229 (6%)

Query: 413 NHIKDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
             I  + ++    +   +RL ++  +    E         +  +   ++   +RL     
Sbjct: 180 RKIYQRTIKENKERLEAERLEKERLEAERLEKEKLEAERLEKEKLEAERLEKERLEAERF 239

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            K +L  +   +E              + + ++L   R +  +L+     L  + +E + 
Sbjct: 240 EKERLESERLEKERL---------EAERLEKEKLEAERLEKEKLEA--ERLEKERLEAER 288

Query: 532 FLPEEI-HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
              E +  +RL +        + ++   +           +   R   ++          
Sbjct: 289 LEKERLEAERLEKEKLEAERLEKEKLEAERLEKEKLEAERLEKERLEAERLEKEKLEAER 348

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           L +++ E E ++ +   + E  +   + + + E   ++ ++E ++  IE
Sbjct: 349 LEKERLEAE-RLEKEKLEAERLEKERIENEILEAE-RLERLEMEKIEIE 395


>gi|328776937|ref|XP_623910.3| PREDICTED: citron Rho-interacting kinase-like isoform 2 [Apis
           mellifera]
          Length = 1467

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 35/316 (11%), Positives = 94/316 (29%), Gaps = 48/316 (15%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN---CINHI 415
                         +   +S+  V+   +           + RA+L++ +         +
Sbjct: 110 VFQMQYKESLAKTRERSRQSVQGVETKLEEIATRSHNQIAELRAKLDLEIAKNTDLETKL 169

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           ++++   +  Q    RL    +    E                 +      ++  L +  
Sbjct: 170 RNEQDSNHCRQ---SRLNVALELAQNELKDCQEQLHSIQATIPARDTEIEALKKQLQERS 226

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE------- 528
                ++    ++ T+           ++L   +++N +L++    + SD  E       
Sbjct: 227 KQLDNAMASKQIITTM----------QEQLEMSKFENEQLKQQLQIIKSDLNETMMNLEQ 276

Query: 529 ---------QKYFLPEEIHQRLCER------------GFGELLKQLDRQVRDAGLWSATT 567
                    Q       + +RL +                ELL++L++ V      +AT 
Sbjct: 277 SEAHALNLEQAAQDKAALQKRLQDSLEKEEEHLRKVGNLEELLRRLEQSVTKLEAENATL 336

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +   +           + K       Q E++E++I  +      E+     + +     +
Sbjct: 337 KMETISPSPDMISKNDIIKIDMHSKEQIEKLEQEIQTMKENLNGERQTAKQAQISLWKKE 396

Query: 628 IH----QIESQEAMIE 639
                  ++ + A+ E
Sbjct: 397 KELSDANLDKRIAIRE 412


>gi|284807020|dbj|BAI67715.1| nuclear matrix constituent protein 1 [Apium graveolens]
          Length = 1171

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 17/230 (7%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R   +  I  + + L +          R  +       ++  +    +    K    +
Sbjct: 219 AERESLTDNISRQREDLREWERKLQEDEERLAEVRRLLNQREERANENDRLYQQKQTELE 278

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
               +   ++ +L N      +    +  +     E   +   L     E K     E+ 
Sbjct: 279 GEQKKIEIIIASLKNKED---DISSRIEKLNIKEKEADAMKHSL-----EIKERDLNELE 330

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY--------KRFRL 590
           ++L  R   E+ K LD       +   + E  +      ++  L              + 
Sbjct: 331 EKLNAREQTEIQKLLDEHKAILEVKKHSFELEMEKRSNDFENDLQSRAVVVEKKEVEVKH 390

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           +  +  + E+ +AQ   K   EK   L+S L ++  +   +  +   IEG
Sbjct: 391 MEVKFAKREQALAQKHEKL-KEKEQSLVSKLQDLKEREKSMRLEANRIEG 439


>gi|193784987|dbj|BAG54140.1| unnamed protein product [Homo sapiens]
          Length = 662

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 98/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 85  DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 144

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 145 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 204

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 205 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 264

Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 265 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 324

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 325 QLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 368


>gi|124004640|ref|ZP_01689484.1| Two component regulator three Y motif family [Microscilla marina
           ATCC 23134]
 gi|123989763|gb|EAY29292.1| Two component regulator three Y motif family [Microscilla marina
           ATCC 23134]
          Length = 1196

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 53/512 (10%), Positives = 125/512 (24%), Gaps = 46/512 (8%)

Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195
            ++R+      +      + M            L  +  +      KI       +  + 
Sbjct: 425 HNQRIRKVYQGQNHAMSFVRMPDEKMLVAGAEGLEMYNIKNREQWTKIKTYPQYPNTFDQ 484

Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRT---------------LSKGESVKYLNSPETI 240
                + ++   +    + G      G+                L    + +       +
Sbjct: 485 YHYLQQDQSGTFWSSHENAGIFSFRLGKNDSLNKLTKYNAKKYGLPSNLNNRIFKIAGRV 544

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG- 299
           +F   K +Y+F  A N   K        N      L E +   +         V+   G 
Sbjct: 545 VFATEKGIYSFNKAKNKFVKDTLDRYVPNGERVFFLAEDHQGNVWCQIGDKIAVLKKSGE 604

Query: 300 -TALTEYQLRLLWKLSPRIV-------LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
                      L   +   +       +     +  +  +               +   +
Sbjct: 605 KYVPNYNHFAPLKGANVYCISTLKSGEVLMGTSEGIIHYSGDLDRNYNVSFSTFLQKVEL 664

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
             S G D   F   +     +    +             +   F   + R          
Sbjct: 665 ENSEGRDSLIFAGIFSSKQGQTFDKQPKN--------LVKVFPFKFNNFRFAFSTPYYTQ 716

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
              I+       + Q     +    ++Y     G   +  K       + P+       +
Sbjct: 717 SETIQYSYYLENFDQKWSTWVNHKEKEYTNLPEGTYTFHLKARNVYGIESPAMS-YSFII 775

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                    +     L+  L+    I     +      +                VE++ 
Sbjct: 776 TPPWYRTVWAYIGFCLMALLLLWGVIWLNTRRLRQQKDF------------LELKVEERT 823

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                   ++ E    E++ + +         +A          +   QA  L    R L
Sbjct: 824 TEISN-KNKILEEQKEEIISKNEALEYQKEEITAKNVELETQKEEMMAQAEVLKSVNREL 882

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
           ++QK+EIE+Q  ++  + ++ +       L +
Sbjct: 883 TQQKDEIERQRDEIELQRDSIQHQKNEIELQK 914


>gi|87300786|ref|ZP_01083628.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit
           ClpB [Synechococcus sp. WH 5701]
 gi|87284657|gb|EAQ76609.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit
           ClpB [Synechococcus sp. WH 5701]
          Length = 962

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 7/141 (4%)

Query: 507 DIRYDNNELQKLWSFLFS--DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
            I   +    +L   + S    VE        I   L         +++  Q +      
Sbjct: 486 AIDLIDEAAAQLRMEVTSKPQVVEAAELDLRRIELALLGAEAASQDERVALQEQRRSAL- 544

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
                ++ D+++ +Q         R L +Q +E+   IA+    GE E+ A L     ++
Sbjct: 545 ----EHLQDLQRRWQAERDQLAELRELLQQDDELRLAIAEAERDGEFEEAARLQVDQLQL 600

Query: 625 HIQIHQIESQEAMIEGFGKMS 645
             Q      +E + +  G +S
Sbjct: 601 VQQRRAALEEELLDDQRGGLS 621


>gi|86130284|ref|ZP_01048884.1| ATP-dependent Clp protease [Dokdonia donghaensis MED134]
 gi|85818959|gb|EAQ40118.1| ATP-dependent Clp protease [Dokdonia donghaensis MED134]
          Length = 868

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 47/139 (33%), Gaps = 7/139 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             L+ ++Q++     D      +   +   +             R+ +      +K   R
Sbjct: 325 KALERRFQKVTVDEPDTESAISILRGIKDKYETHHKV-------RIKDDAIIAAVKLSQR 377

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            +    L     +       +   +  +  +   +L R+  ++E +I  +  + + +K  
Sbjct: 378 YITSRFLPDKAIDLMDEAAAKMRMEINSKPEELDVLDRRVMQLEIEIEAIKREKDEDKLK 437

Query: 616 ILISILHEVHIQIHQIESQ 634
            L + L  +  + + + +Q
Sbjct: 438 SLRADLANLKEERNDLNAQ 456


>gi|332529059|ref|ZP_08405024.1| replicative DNA helicase [Hylemonella gracilis ATCC 19624]
 gi|332041503|gb|EGI77864.1| replicative DNA helicase [Hylemonella gracilis ATCC 19624]
          Length = 469

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 46/149 (30%), Gaps = 13/149 (8%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++       E+++L  L+   A        L +  +   E + +++ +       +    
Sbjct: 23  RVPPHSIEAESSVLGGLLLDNAAWDRVGDLLNEGDFYRYEHRLIYAAMAGLINASRPADV 82

Query: 535 EEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVR-------QGYQQA 581
             +   L  +G  E       L  L + V  AG      E                    
Sbjct: 83  ITVFDHLQSQGKAEETGGLAYLNALAQYVPSAGNIRRYAEIVRERAILRKLVAASDEIAT 142

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            A   + R ++   +E E++I  +  +G 
Sbjct: 143 TAFNPQGRPVAEILDESEQKILNIGEEGS 171


>gi|326914242|ref|XP_003203435.1| PREDICTED: microtubule-associated tumor suppressor candidate 2-like
            [Meleagris gallopavo]
          Length = 1395

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 70/204 (34%), Gaps = 6/204 (2%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA-AL 487
            ++ LQ L Q+   ++S      ++  + +     SQ L Q S +           E    
Sbjct: 1119 KEELQDLEQRLREDYSTKMESLQEQHKLQLDLIKSQHLHQVSDIIDVHQASVLKLENNHA 1178

Query: 488  LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
            +   +      +E  + +A    +  +L++ +  L      Q          +  +    
Sbjct: 1179 VALAVLQDEHNREIRELVAAHELEKTQLKENFEKL--RLSLQDQIDTLTFQNQSLKAKAD 1236

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-YKRFRLLSRQKEEIEKQIAQVT 606
               + L +   +    +     ++ +  +  +  L L   +     ++  E+EKQ A+  
Sbjct: 1237 RFEEALKKNTEEQLKIAQAPYLHLEEDLKSLKHVLELKNHQIHEQEKKIMELEKQ-AEKN 1295

Query: 607  AKGEAEKTAILISILHEVHIQIHQ 630
               E EK  +L     E+  +I Q
Sbjct: 1296 LILE-EKITVLQQQNEELRARIEQ 1318


>gi|294637629|ref|ZP_06715908.1| DNA repair protein RecN [Edwardsiella tarda ATCC 23685]
 gi|291089184|gb|EFE21745.1| DNA repair protein RecN [Edwardsiella tarda ATCC 23685]
          Length = 553

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 70/222 (31%), Gaps = 24/222 (10%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE--AALLLTL 491
           QL  K   +      Y ++    ++ +   ++   S  +     ++ S RE    LL   
Sbjct: 134 QLLLKPEHQRHLLDAYGQQQTLLQEMRAAYRQWHHSVRLLADHRRQVSEREARRELLQYQ 193

Query: 492 INHPAILQEQYQELADIRYDNNELQK---------LWSFLFSDFVEQKYFLPEEIHQRLC 542
           +     L E   +L +    + E ++         L   + +   + +      +     
Sbjct: 194 LKE---LNEFAPQLGEFEQIDEEYKRQANSGQLLSLSQQILAALADGEDGNALSLLH--- 247

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
             G    L +L              E   + + +   +         +   + +++E+++
Sbjct: 248 --GARHSLNELVSYDARFAPLLEMLEEAAIQIDEASNELRHYGDSIEMDPARLQQLEQRL 305

Query: 603 AQV-----TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           ++        +   E    L   L +    + + +  EA++E
Sbjct: 306 SRQITLARKHQVAPETLPHLHQQLLDEQQALDRQQDDEALLE 347


>gi|253701893|ref|YP_003023082.1| chromosome segregation protein SMC [Geobacter sp. M21]
 gi|251776743|gb|ACT19324.1| chromosome segregation protein SMC [Geobacter sp. M21]
          Length = 1176

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 71/216 (32%), Gaps = 13/216 (6%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           ++L+   ++   +     R+ ++    RDQ   S+R + S   +     +   RE     
Sbjct: 305 NKLEFQRRELANQERHGARFEEELQGLRDQLAASERELGSLEAQQTSFLEEHAREGE--- 361

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
             + H   L E  +  A       EL +    +F+   E      +            E 
Sbjct: 362 -ALEHREALLE--EMAASEAGVTRELDEARRAMFAALSEGAQANNQHAAAVKRLASIDER 418

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI---EKQIAQVT 606
           L+   R+    G     +   +  ++   +Q   L +   LL  +       E ++ Q  
Sbjct: 419 LQASQRERVLLGERLFESNGKVDALKAEREQ---LAREKELLDEELTLAGSREAELKQAQ 475

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
             GE      L   L     ++  ++  EA   G+G
Sbjct: 476 EAGEK-LLQQLRDQLSSASSRLKSLQELEAQFAGYG 510


>gi|195040200|ref|XP_001991023.1| GH12450 [Drosophila grimshawi]
 gi|193900781|gb|EDV99647.1| GH12450 [Drosophila grimshawi]
          Length = 606

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 45/127 (35%), Gaps = 10/127 (7%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           Q+L   L     E       E+ +          +K++  ++     +++     +    
Sbjct: 479 QRLRKELI----ESGLIEANELAKHEDVDEVLLEIKRVTAEISAVAQFNSDELKRLRSAA 534

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK------GEAEKTAILISILHEVHIQIH 629
               + + L ++   + ++  E  K++ Q  AK       E ++   L S    +  Q+ 
Sbjct: 535 SDEIKRIELKRKLDTIDQEILECYKRMLQYRAKRKGHTAEERQEIMRLTSEQRALAEQLE 594

Query: 630 QIESQEA 636
           +++   A
Sbjct: 595 RMQLMGA 601


>gi|170289397|ref|YP_001739635.1| binding-protein-dependent transport systems inner membrane
           component [Thermotoga sp. RQ2]
 gi|170176900|gb|ACB09952.1| binding-protein-dependent transport systems inner membrane
           component [Thermotoga sp. RQ2]
          Length = 823

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 40/359 (11%), Positives = 108/359 (30%), Gaps = 27/359 (7%)

Query: 283 VLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342
           ++++    V  VV++            L+     +    D   P     +   DL     
Sbjct: 17  IIAVILFPVVWVVTTSLRRDEAAFSSKLFTSRLTLQHYRDLVAPEKNLPFLVQDLQAMIS 76

Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
                 +       +D           ++       L      ++R     + ++ + + 
Sbjct: 77  KV-KPYDTWSEEELKDAVGSS-IEKVKSYLSETEARLNDAVNSFERVDAFLNDHSEEIKN 134

Query: 403 ELEIHLKNCINHIKDQKLRY-------YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
                ++  ++ I+   L          Y    ++R      K + E            R
Sbjct: 135 RTIEEMRELLSSIQIPDLNDSVENRAALYLVLSKERYNSTAHKALKELLERFTGVDTGTR 194

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
              +K           +           +  L               +E++ +R   ++L
Sbjct: 195 DGYEKAIESLKESYEKLADGYDGLIEETQREL-----------NAVKEEMSSLRQQYSDL 243

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV--- 572
           Q     + ++ V +K  +PE    ++       L +Q+ +    +    A  E +     
Sbjct: 244 QD--DVMEANLVIEKDIIPELERIKISLSELNNLREQIRQTALSSPFPVADEEFSRNTSE 301

Query: 573 --DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
              +   +   +  +  +  L     E++K++ +++   E  +  +L S L +++ ++H
Sbjct: 302 AVQMLNEFLDEMITFAEYDSLKDLLVELKKELTKLSEGNEDLRNRLLFSDLMKIYEELH 360


>gi|152990623|ref|YP_001356345.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Nitratiruptor
           sp. SB155-2]
 gi|151422484|dbj|BAF69988.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Nitratiruptor
           sp. SB155-2]
          Length = 862

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 79/202 (39%), Gaps = 7/202 (3%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KY  + +   R ++           + ++++    + +      + ++AL+  +    
Sbjct: 319 YRKYFEKDAALQRRFQPVKVEEPSINEALQILRGLRERLEAHHNVQILDSALVAAVKLSS 378

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + ++Y     I   +    +L   +     E + F   ++ + +  +   E    L  
Sbjct: 379 RYITDRYLPDKAIDLIDEAAAELKMQI-----ESEPFELSKVKREIQ-QLLVEKEALLME 432

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           + +         E  + D+ +  +   + ++  + + ++  EI+++I ++ A+ E  K  
Sbjct: 433 KSKKNEERLKEIEKELADLEEKKRALESQFETEKKIFKEIAEIKEKIERLKAEAEKAKRE 492

Query: 616 ILISILHEVH-IQIHQIESQEA 636
              +   E+   QI Q+E + A
Sbjct: 493 GDYNKAAEIEYGQIPQMEQKLA 514


>gi|114556838|ref|XP_001156449.1| PREDICTED: hook homolog 1 isoform 2 [Pan troglodytes]
          Length = 686

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 104/304 (34%), Gaps = 25/304 (8%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D             + ++  + 
Sbjct: 227 DDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQ 286

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      +R +++ L +  +          ++  +    +   +   +            
Sbjct: 287 KLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSE 346

Query: 481 SLREAALLLTLIN----HPAILQEQYQELAD---IRYDNNELQ--KLWSFLFSDFVEQKY 531
           S R   L   +      H A+L+E+ + +     ++  N EL+  ++     +       
Sbjct: 347 SKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTDASAT 406

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALA------- 583
              E +   +    + E+  +L  + +   L    +E   I ++++  +Q          
Sbjct: 407 KSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELET 466

Query: 584 ----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQE 635
                 +R R L +Q E+++K + +  +K E E ++ L   L     ++     +++ ++
Sbjct: 467 EQRLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQ 526

Query: 636 AMIE 639
            +IE
Sbjct: 527 ELIE 530


>gi|457517|gb|AAA35654.1| alternatively spliced [Homo sapiens]
          Length = 678

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 98/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 101 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 161 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 220

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 221 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 280

Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 281 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 340

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 341 QLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 384


>gi|73990106|ref|XP_851203.1| PREDICTED: similar to Golgi autoantigen, golgin subfamily A member 4
            (Trans-Golgi p230) (256 kDa golgin) (Golgin-245) (72.1
            protein) [Canis familiaris]
          Length = 1486

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 78/222 (35%), Gaps = 8/222 (3%)

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R  +   + +   +  +    +     +     A     +  S+  +   ++ G +  +
Sbjct: 1123 EREGHRVEMEELTSKFDRLQALQRQMDEKNKPIEALEESAEEKSKSHVVQPILPGNMEVQ 1182

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             +  E  L         + +E  +   D+R    E Q+    +  ++ ++     ++  +
Sbjct: 1183 HNDLEFKLAGAEQEKQKLGKEIVKLQKDLRMLRKEHQQELDIMKKEYEQEMEEKIKQEQE 1242

Query: 540  RLC---ERGFGELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALALYKRF-RLLSRQ 594
             L         +L+++   Q+         T +  I   ++   + L  ++   + L ++
Sbjct: 1243 DLELRHNSTLKQLMREFHTQLAQKEQELEVTIKETIDKAQEVEAELLESHQEETKQLYKK 1302

Query: 595  KEEIEKQIAQVTAKGEA---EKTAILISILHEVHIQIHQIES 633
              E E  + +   + E     +   + + + ++  Q+ ++++
Sbjct: 1303 IAEKEDDLQRTAKRYEEILDAREEEMTAKVMDLQTQLEELQN 1344


>gi|47225968|emb|CAG04342.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1114

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 65/215 (30%), Gaps = 19/215 (8%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE- 484
           + I  R  Q+    + E           +  R        L+ S L   K  +  + ++ 
Sbjct: 740 EEIEQRWHQVETTPLREEKQVPINTALRSSDRLPAHELAALLDSELEAQKRKQDVAQQQI 799

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             L  +       +     ++  ++       KL S +      ++         +L + 
Sbjct: 800 RTLKRSYTEAQDAVDRHETDIQALQ------VKLASAMAEILASEEAVTRMRNELKLEQE 853

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              E  ++  R           +E     +R+     L   +  R L RQ     + + +
Sbjct: 854 RSKEQEEEHSRSETTLRAQLKESE---DRLREVEASLLERNQALRHLERQ-----QALQR 905

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              +    +   L   L EV  +++  E  + + E
Sbjct: 906 DHMR----EIQRLQERLQEVTARLNATEEGQVLKE 936


>gi|94310368|ref|YP_583578.1| condensin subunit Smc [Cupriavidus metallidurans CH34]
 gi|93354220|gb|ABF08309.1| chromosome segregation ATPase [Cupriavidus metallidurans CH34]
          Length = 1171

 Score = 41.4 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 89/260 (34%), Gaps = 9/260 (3%)

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
            +E    + N   +  E    +++ +  + +   +      +  R +QL Q    E    
Sbjct: 173 YKERRRETENRLGDTRENLTRVEDILRELGNNLDKLEGQAEVAQRFRQL-QAEGEEKQHL 231

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
               +K     +Q+  ++ + Q+ +     + +    EA L      H A     +    
Sbjct: 232 LWLLRKREAQAEQERHARAIDQAQIDLEAQTAQLRHVEAELETMRAAHYAASDGMHAAQG 291

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-----GELLKQLDRQVRDAG 561
            +   N E+ KL + +    VE +  L  +I     +R        +   +L +   +  
Sbjct: 292 SLYEANTEVSKLEAEI-RYVVESRNRLQAQIAALTTQREQWQGKSDQANDELAQAEENLA 350

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT--AILIS 619
           L  A T  +   V Q   +   L  ++R   +   E    I Q     + E         
Sbjct: 351 LAEARTIESQETVAQKSDELPTLEAQWRDAQQMLNEQRAGIMQAEQALKLEAAHQRNANQ 410

Query: 620 ILHEVHIQIHQIESQEAMIE 639
           +L ++  +  +++ +E  ++
Sbjct: 411 MLQQLEQRKERLQGEEKGLD 430


>gi|321477866|gb|EFX88824.1| hypothetical protein DAPPUDRAFT_221069 [Daphnia pulex]
          Length = 461

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 84/283 (29%), Gaps = 27/283 (9%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            R   +TA +     + P         T                 ++   + +K+ +   
Sbjct: 74  YRKAVETACDFQKGNNSPKFTFHCSTPTNGCQGEYLTPTQRANRTIRQLKSLLKESEANS 133

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y       +Q+L ++ +     + +  K+ +    +   +  L   SL           
Sbjct: 134 NYKDF---EIQRLTRELVGLRLEHAQCEKRISGGDKESDGATHLTAPSLADSGHFDD--- 187

Query: 483 REAALLLTLINHPAILQEQYQELADIRYD---NNELQKLWSFLFSDFVE---QKYFLPEE 536
                   L  HP+  ++ + E     Y      E  +L +           Q     ++
Sbjct: 188 --------LSYHPSQFKDSFAEKDADLYSGGWTAEKNRLTNAYLEKIENLTKQHTTEMQD 239

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +  R  +R     L QL            + +    ++ +  ++ + L +    L R+  
Sbjct: 240 VKSRFTDR-LESALTQLSDSNTRYANLLTSHDLTREELERVEKEKVFLRQHIESLERKNA 298

Query: 597 EIEKQIAQVTAKGEAEKTAILI------SILHEVHIQIHQIES 633
           +++  + +        +   LI        L E    I +++S
Sbjct: 299 QLQNDMEERETLEYETREKELIQIESLTRELAEKTEMISELQS 341


>gi|320451473|ref|YP_004203569.1| excinuclease ABC subunit B [Thermus scotoductus SA-01]
 gi|320151642|gb|ADW23020.1| excinuclease ABC, subunit B [Thermus scotoductus SA-01]
          Length = 666

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 1/107 (0%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA-NIVDVRQGYQQALALYKRFRLLSR 593
           E + + + E      L++   Q       +   E   I+   +  ++A         L  
Sbjct: 553 EAMERAIRETNRRRALQEAYNQEHGIVPETVRKEVRAIIRPEEYGEKAPVEAWEGEDLKE 612

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           +  E+E  + Q     + E+ A L   L  +  ++  +   EA+  G
Sbjct: 613 RIAELELAMWQAAEALDFERAARLRDELRALEARLQGLTPPEALPGG 659


>gi|297844510|ref|XP_002890136.1| XH/XS domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335978|gb|EFH66395.1| XH/XS domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 635

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/283 (9%), Positives = 81/283 (28%), Gaps = 15/283 (5%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-R 421
            +   K  + +   +S         R  +  S +   E    E  L+   + ++++   R
Sbjct: 194 TQGSSKKEWTERSGDSESKAYGWCARAEDFNSQDPIGEYLSKEGQLRTVSDVLQEKVQDR 253

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                 + + +    +        Y +      R  D+K            K +      
Sbjct: 254 NTVLDELSNMIAMTNEDLNKVQYSYNKTAMSLQRVLDEKKSLHEAFADETKKMQQMSL-- 311

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                +   L +   +  E  +++ D+     +L K    L     E++    ++     
Sbjct: 312 ---RHIQKILYDKERLSDELDRKMRDLESRAKQLDK-QEALTEL--EKQKLDEDKRKSDA 365

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             +      ++  +            +    D               + L  + +E++ +
Sbjct: 366 MNKSLQLASREQKKADESVLRLVEEHKRQKEDALNKILLLEKQLDTKQTLEMEIQELKGK 425

Query: 602 IAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEAMI 638
           +  +   G+ +      K   +   L E   ++  +E   +++
Sbjct: 426 LQVMKHLGDDDDEAVKKKMQEMNDELKEKKSELEGLEEMNSVL 468


>gi|294784547|ref|ZP_06749836.1| replicative DNA helicase [Fusobacterium sp. 3_1_27]
 gi|294487763|gb|EFG35122.1| replicative DNA helicase [Fusobacterium sp. 3_1_27]
          Length = 446

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/159 (8%), Positives = 50/159 (31%), Gaps = 4/159 (2%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K        E AL+  +  +  +  E    +    +   E   ++  +   + + K    
Sbjct: 7   KKIPHSLEAERALIGGIFYNQDLFDEIRDIVKVEDFYKVEHSAIYDAIEKVYSDSKGIDA 66

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I + + +       +++ + + D      ++   +        +  A+ +R   +  +
Sbjct: 67  ILIDEEIKKSNSKNK-EEILQVLSDILDEITSSYNLLEYAN--LIKEKAMLRRLGNVGVE 123

Query: 595 KEEIE-KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             ++    +       +  +  +L    + +   I  ++
Sbjct: 124 ITQLAYNDVRVAEEIIDEAEAKVLNLSKNILKNSIVDMK 162


>gi|293357587|ref|XP_342346.4| PREDICTED: centromere protein E [Rattus norvegicus]
          Length = 2503

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 70/209 (33%), Gaps = 9/209 (4%)

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
              L  +         +  +  A  R+     ++L +    +    +   + +  L   L 
Sbjct: 1697 AVLQTQNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLN 1756

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE----IHQRLCERGFGE 548
             +   +    +E  D++  +  L++    L     + +    E+        L  +   E
Sbjct: 1757 ENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQE 1816

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSRQKE--EIEKQIAQ 604
             +++L   V       +     +       Q+ +   K    +LL  + E  E +KQ+ +
Sbjct: 1817 TIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKE 1876

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIES 633
                    +   L ++  ++H  + +++S
Sbjct: 1877 QGLALSKIEMENL-NLAQQIHQNLEEMKS 1904


>gi|291384346|ref|XP_002708572.1| PREDICTED: nuclear mitotic apparatus protein 1 [Oryctolagus
            cuniculus]
          Length = 2219

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 69/220 (31%), Gaps = 18/220 (8%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             R ++  ++      G      +  R   + GP ++ +       +  +      A  L 
Sbjct: 1455 KRHREELEQSKQAAGGLRAELMRLQRELGELGPLRQKVAEQERAAQQLRAEKASYAEQLS 1514

Query: 490  TLIN-HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             L   H  + +E       +       ++          E+       +      R   E
Sbjct: 1515 MLKKAHGLLAEENRGLGERVSIG----RQFLEVELDQAREKYVQDLASVRADAESR-LAE 1569

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            + ++     R+  + +A  E     V +  Q+     ++   L+ Q EE+ K++A     
Sbjct: 1570 MQREAQSAARELEVMTAKYEGAKAKVLEERQRFQEERQK---LTAQLEELSKKLADYDQT 1626

Query: 609  GEAEKTA---------ILISILHEVHIQIHQIESQEAMIE 639
             + ++                   +  Q+ ++++Q +  E
Sbjct: 1627 NKMQQQKLKAFQAQGGESQQEAQRLQAQLAELQAQLSQKE 1666


>gi|301763908|ref|XP_002917361.1| PREDICTED: pleckstrin homology-like domain family B member 2-like
           [Ailuropoda melanoleuca]
 gi|281352112|gb|EFB27696.1| hypothetical protein PANDA_005585 [Ailuropoda melanoleuca]
          Length = 1247

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/112 (10%), Positives = 39/112 (34%), Gaps = 13/112 (11%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           +++ + L         +     +          E  I ++    +  +A+      L ++
Sbjct: 541 DDLLRDLTSAFLKTPSESAYLSILPKTPDGINEEQRIQELAAMEETRIAILNNLEELEQK 600

Query: 595 KEEIEKQIAQVTAKGEAE----------KTAILISI---LHEVHIQIHQIES 633
            ++I  Q+ + + + + E          +   L+     L  ++ +I ++E 
Sbjct: 601 IKDINDQMDESSRELDMECALLDGEQKSEATELMKEKEILDHLNRKIAELEK 652


>gi|197105302|ref|YP_002130679.1| peptide chain release factor 2 [Phenylobacterium zucineum HLK1]
 gi|238690157|sp|B4RCR3|RF2_PHEZH RecName: Full=Peptide chain release factor 2; Short=RF-2
 gi|196478722|gb|ACG78250.1| peptide chain release factor 2 [Phenylobacterium zucineum HLK1]
          Length = 369

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 2/95 (2%)

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQV 605
              L++LD         +   + +        +  L+        L R   +        
Sbjct: 23  EPALRKLDELNARVEDPTLWNDPDEAQAVSRERSRLSAQVEAVHGLERDLADALGYAELA 82

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             +G+        + L E+  +  + E  EA++ G
Sbjct: 83  DEEGDEASLDEARAQLREIKERAARAE-LEALLSG 116


>gi|194761560|ref|XP_001962997.1| GF15721 [Drosophila ananassae]
 gi|190616694|gb|EDV32218.1| GF15721 [Drosophila ananassae]
          Length = 733

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 48/151 (31%), Gaps = 21/151 (13%)

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
            L +      EL +++     + +  +     ++ +   ++    LL++L          
Sbjct: 490 HLENYELQRQELIRMYEHRIEELIRSQDGTTSDLKRTHNDK-VEALLQKLAECNSRYSDM 548

Query: 564 SATTEANIVDVRQGYQQALALYKRF-----------RLLSRQKEEIEKQIAQVTAKGEAE 612
               E     +R+  +Q   L ++              + +Q +E E +I +     E  
Sbjct: 549 VPDYEQAKQRIRELEKQLEDLQRKLMEHEEKQNKMYLHMYQQGQEAE-RITRADQALELA 607

Query: 613 KTA--------ILISILHEVHIQIHQIESQE 635
           +           L+  L     ++  I + E
Sbjct: 608 QRQPENKVSINELLHQLQSTQDELENIRASE 638


>gi|171684001|ref|XP_001906942.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941961|emb|CAP67613.1| unnamed protein product [Podospora anserina S mat+]
          Length = 2405

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 88/263 (33%), Gaps = 21/263 (7%)

Query: 386  WKRETENRSFNTPDERAELEIHLKNCINHIKDQKL---RYYYSQAIRDRLQQLFQKYITE 442
             +R  +       +   +L + +K  +   +       R    + + D+++   +     
Sbjct: 902  IQRNFQVYLDLCENPWWQLLVRMKPLLGATRTATEVKKRDEMIKQLHDKMKLELEN---R 958

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAILQ 499
                      +A     +   +     +L K ++ K+  +REA L   L   ++    L+
Sbjct: 959  QKLEEERRNVHAELNKIQQVLESERSLALDKEEIFKRLQMREAELEDKLAGALDDQERLE 1018

Query: 500  EQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            +Q    L   +    ++    + L            E+           + + ++ ++  
Sbjct: 1019 DQLDSLLDAKKRAEEDVNSYRAQLEQAAGLISRLEAEKSELAAKVADLEKSIDEIAKKQS 1078

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRF------RLLSRQKE-EIEKQIAQVTAKGEA 611
            +        EA + D  +  Q  L+L  R       +LL   ++ +I+ +  +   +   
Sbjct: 1079 ERSAQ----EAALEDEVKMLQSQLSLKDRKVRDMESKLLKADQDLDIKLRTVEKELQTSR 1134

Query: 612  EKTAILISILHEVHIQIHQIESQ 634
             K + L +   E+  Q+ Q+   
Sbjct: 1135 TKNSQLSAENREIQQQLAQLSKT 1157



 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/93 (11%), Positives = 30/93 (32%), Gaps = 2/93 (2%)

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             + +  R   E+L  L  Q        +     I ++    +    L      +     +
Sbjct: 1795 LRDIQTRSHEEILDLLHSQEDSRRRLLSDHNDAIGELAHIKEHFERLRHDRAKIELDLRD 1854

Query: 598  IEKQIAQVTAKGEAEKT--AILISILHEVHIQI 628
             +  + +++   E E      L+    ++ I++
Sbjct: 1855 AKSDLQEMSLAREQEAASRNQLLQEFADLQIRL 1887


>gi|149572127|ref|XP_001512982.1| PREDICTED: similar to Numa1 protein, partial [Ornithorhynchus
           anatinus]
          Length = 488

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 60/163 (36%), Gaps = 12/163 (7%)

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQK--------LWSFLFSDFVEQKYFLPEE 536
             LL  L+  P + +    + + +   +  + +        + S +          L E 
Sbjct: 108 RVLLPWLVRCPPLRRLNRHDRS-VDLIHPSVGRSVVFIELCVRSTVLGALASTIDLLHEG 166

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR--- 593
             Q+  +    EL  QL ++ + A  +    E          QQ   L ++ + L R   
Sbjct: 167 EIQKEAQAQLSELQAQLSQKEQAAEHYKLQMERAKTHYDAKKQQNQELQEKLQGLERLQQ 226

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           Q +E+++++  +    + ++     +   +  +   +++ +EA
Sbjct: 227 QNQELQEKLQGLERLHQEKQALQAKAEQLDQELHQARLQGKEA 269


>gi|148360056|ref|YP_001251263.1| effector protein B [Legionella pneumophila str. Corby]
 gi|148281829|gb|ABQ55917.1| effector protein B, substrate of the Dot/Icm secretion system
            [Legionella pneumophila str. Corby]
          Length = 1294

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 90/272 (33%), Gaps = 37/272 (13%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
             +    + I +   L +   +   +     T          LK   +  +  + +    +
Sbjct: 871  HQEETIERITKEKSLANSALESLRKEMHELTRKNEENQLKLLKQVHSLSEQLEEKQLQIR 930

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKK----NARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                +LQ+  ++            +       +  + K   Q+L +    K K S   S 
Sbjct: 931  EFEKQLQEKEKRVEQSEKEKASEKRTVVSLREQVSNLKLQLQQLGEVIQEKEKGSSLISQ 990

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            +   ++        I+++Q ++L +++    ++Q+L S       + +    E +H +  
Sbjct: 991  QSKQIIAL----QEIIEDQKRQLEELKI---KIQELASANQELGKQNQSLSKENLHNKNT 1043

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                 + L +L  Q+      S+  E  I  +R+                         I
Sbjct: 1044 VEDLKKKLNELSVQLEQLHQSSSEKEQTIRKLREEL-----------------------I 1080

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             + ++  + E+  ++   L E   +I +++ +
Sbjct: 1081 KKDSSLKQNEEMQLVQKHLQE---EIDRLQKE 1109



 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 80/236 (33%), Gaps = 28/236 (11%)

Query: 425  SQAIRDRLQQ---LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL--VKGKLSKK 479
             +++ +++Q+   L +    E               ++    + L  S+L  ++ ++ + 
Sbjct: 841  LKSLSEQVQEQTLLVESLKEELQKQKESNTHQEETIERITKEKSLANSALESLRKEMHEL 900

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                E   L  L      +    ++L + +    E +K    L       +    E+  +
Sbjct: 901  TRKNEENQLKLLKQ----VHSLSEQLEEKQLQIREFEK---QLQEKEKRVEQSEKEKASE 953

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            +       E +  L  Q++  G      E     + Q  +Q +AL +      RQ EE++
Sbjct: 954  KRTVVSLREQVSNLKLQLQQLGEVIQEKEKGSSLISQQSKQIIALQEIIEDQKRQLEELK 1013

Query: 600  KQIAQVTAKG----------------EAEKTAILISILHEVHIQIHQIESQEAMIE 639
             +I ++ +                         L   L+E+ +Q+ Q+    +  E
Sbjct: 1014 IKIQELASANQELGKQNQSLSKENLHNKNTVEDLKKKLNELSVQLEQLHQSSSEKE 1069


>gi|145534185|ref|XP_001452837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420536|emb|CAK85440.1| unnamed protein product [Paramecium tetraurelia]
          Length = 579

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 83/234 (35%), Gaps = 18/234 (7%)

Query: 416 KDQKLRYYYSQAIRDRL--QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           KD   +  YS+ +   +     FQ+     S   +  ++  +   +K  +  L +S    
Sbjct: 216 KDSDGKINYSELLEAIIFTSDYFQQERQIVSELRKSRERIIQLEKEKEENDVLKRSRERI 275

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS--FLFSDFVEQKY 531
            +L K     E       +      +E+ ++L ++R     LQ L     +         
Sbjct: 276 EELKKSREYLEQ------LEELKRSREKIEQLEELRQSRERLQDLKKSREVQEALKNSGE 329

Query: 532 --FLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKR 587
                ++  +RL E +   E L QL+   +         E      RQ     L    +R
Sbjct: 330 KIQDLQKSRERLEELKKSRERLNQLEELRKSRQQMEELEELKKSRERQAQIDELKKSRER 389

Query: 588 FRLLSRQ---KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES-QEAM 637
              L +     +++E++        E +K+   I  L +   +I ++ + QEA+
Sbjct: 390 LEDLRKSRETLQQLEQERKNHEKIDEQKKSRERIEELQKQRKRIEELRTYQEAL 443


>gi|116008018|ref|NP_001036716.1| myosin heavy chain-like, isoform F [Drosophila melanogaster]
 gi|113194788|gb|ABI31172.1| myosin heavy chain-like, isoform F [Drosophila melanogaster]
          Length = 1923

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 35/226 (15%)

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            L+ L ++    ++   +  +K          + R  + +  +    K     E   L   
Sbjct: 1340 LRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQT 1399

Query: 492  INHPAILQEQYQE--------LADIRY---DNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            +    +  E  +E        L ++ +      E  +L           +     E   +
Sbjct: 1400 LADTRLDLEFKEEKLASLQRELEEMTFGGGTEEEFAQLR----------RSKNETERRAK 1449

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LLSRQKEEIE 599
              E    E+  Q+    +       T E    + R+  QQ     +  R    ++ + +E
Sbjct: 1450 EQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALE 1509

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE--------SQEAM 637
             Q+     + E E+  +L+   HE+  ++  +E        ++EA+
Sbjct: 1510 CQL-----ETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEAL 1550



 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/284 (8%), Positives = 76/284 (26%), Gaps = 21/284 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE--IHLKNCINHIKDQ 418
              +R   +   ++   E   +    +K+          +                 +   
Sbjct: 1477 ETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSM 1536

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            + R    +   + L Q  ++ + ++    +  +          P + L++   ++ +L  
Sbjct: 1537 EDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIR--QLRNQLED 1594

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              S R        +      +   +        +   +        +     +    E+ 
Sbjct: 1595 AESAR-----SLAMKARQTAE--AELTEVQAMFDESHRARNDA--EERANAAHRDRAELQ 1645

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             ++ E             ++             ++V +   +   +      L  Q  E+
Sbjct: 1646 AQIEENEEEL-----GELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAEL 1700

Query: 599  EKQIAQVTAKGEAEKTA---ILISILHEVHIQIHQIESQEAMIE 639
            + ++  V   G+         L     E+  ++   ++  A +E
Sbjct: 1701 QHRLDNVENLGDPSMAMMSKRLELRTKELESRLELEQATRARLE 1744


>gi|77456560|ref|YP_346065.1| peptidase M23B [Pseudomonas fluorescens Pf0-1]
 gi|77380563|gb|ABA72076.1| putative peptidase [Pseudomonas fluorescens Pf0-1]
          Length = 434

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 72/209 (34%), Gaps = 11/209 (5%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            +L++  +    E        ++    + +K  S R  Q  L+  +            L 
Sbjct: 65  GKLEKQVEALQKELKKSESELQRLDAEK-KKLQSARTEQQRLIAIQARAAYQNGRQEYLK 123

Query: 490 TLIN--HPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            L+N  +P         Y  L+  R    +L+     L      +K    ++    + + 
Sbjct: 124 LLLNQQNPEKFARTLTYYDYLSQARL--EQLKSFNETLRQLANVEKDIGLQQAQLLVQQS 181

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                 + LD+  ++     A       DV+   Q+  A  +    LS+  + IE+ +A+
Sbjct: 182 DLDTQREALDKVRKERQQALAKLN---DDVKARDQKLAAREQDQADLSKVLKTIEETLAR 238

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIES 633
              + E  +   LI+       ++ + ++
Sbjct: 239 QAREAEEARQKALIAQQEAEKKRLREAQA 267


>gi|312213117|emb|CBX93199.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1071

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
             LQ     L     E +  + E +  +     F  LL++L  + +         + N+ 
Sbjct: 119 ESLQTRIKHLEKQHSEDQECIRELVLAKEERDRFKNLLEKLQNKCQVQHTELQELKQNLR 178

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           D  Q   + L    +   ++ +   +EK++AQ+ A+    +   L S L E   ++  + 
Sbjct: 179 DA-QNEHEILTRNTQENEITLEDALVEKEMAQLRAETAEAEFESLRSQLQERDEELEILR 237

Query: 633 SQ 634
            +
Sbjct: 238 QE 239


>gi|308501118|ref|XP_003112744.1| CRE-MRCK-1 protein [Caenorhabditis remanei]
 gi|308267312|gb|EFP11265.1| CRE-MRCK-1 protein [Caenorhabditis remanei]
          Length = 1469

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 90/291 (30%), Gaps = 18/291 (6%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                   K   + L            +++ ++      +++ +        +   K + 
Sbjct: 494 YEATIAQLKDEIQILNKRLEDEAVAQQQQKPKDEIVVESEKKLKEMKERNKQLVMEKSEI 553

Query: 420 LR------YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            R       +  Q + ++   + Q+   +           +     K   +   ++    
Sbjct: 554 QRELDNINDHLDQVLVEKATVVQQRDDMQAELTDVGDALLSEKDTVKRLHEESEKAKKQA 613

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKY 531
            +L +K    EA  ++ +     +  E  +        + E+      +       E+K 
Sbjct: 614 AELEEKLKTVEAEKIVLIKKQEEVTSEARKSAQPDDQLSEEVVAAKKNIATLQSANEEKE 673

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRL 590
              +++ QR+ E        +       +       EA+    ++  Q  +  +    R 
Sbjct: 674 AEIKKLKQRMEE--------ERASHTAQSEQEMKQLEAHYERAQKMLQDNVEQMNVENRG 725

Query: 591 LSRQKEEIEKQIAQVTAKGEAEK-TAILISILHEVHIQIHQIESQEAMIEG 640
           L  + E++ +Q+A +      E+    L + ++E      ++E+    I G
Sbjct: 726 LRDEIEKLSQQMAALPRGALTEQQLLELFNWVNEEKATREEMENLTRKITG 776


>gi|292624926|ref|XP_002665824.1| PREDICTED: dystrobrevin beta, partial [Danio rerio]
          Length = 601

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 58/190 (30%), Gaps = 13/190 (6%)

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR--EAALLLTLINHPAILQEQYQELAD 507
             +   + ++  P      S   +            E AL+   +N    LQ   + L  
Sbjct: 312 PPRPIGNMNEPAPPLSTGSSPTKRLPTLAAAQRMNEEHALIAAYVNK---LQSSPRALDS 368

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS--- 564
               + E + +  +      +  +            +   EL+ QL+ + R+        
Sbjct: 369 PVRSDEEHKLIARYASRLATDPGHTARPADFSYDTNKQQRELIMQLENKNREILQEIQRL 428

Query: 565 -ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISI 620
               E       +  QQ   L    R L ++K+E+E     + +   +   +    L+ +
Sbjct: 429 RVEHEQACQPTPERVQQNPTLLAELRQLRQRKDELEQRMSSLQESRRELMVQ-LEGLMKL 487

Query: 621 LHEVHIQIHQ 630
           L +   +   
Sbjct: 488 LKDEEQRQAA 497


>gi|224051987|ref|XP_002200465.1| PREDICTED: similar to liver glycogen phosphorylase [Taeniopygia
            guttata]
          Length = 2083

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 34/310 (10%), Positives = 95/310 (30%), Gaps = 41/310 (13%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
                    ++ + +++   +        +      D R +    +      I        
Sbjct: 1309 HHRDLHHLKQELEDTVSHYEKQLDETKAHWEKEQEDMRQKYAEEMHVMEKQITG------ 1362

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                I +   +       +     +Y ++  + +      +  +Q  L +       +  
Sbjct: 1363 LKNQIAELQGEAAAFRGQQEKLDCKYNEEKNKLQMHFDEEKANLQEQLRQEHEEDVRARL 1422

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD---FVEQKYFLPEEIHQR 540
            E A            QE+ + + +  +   +++ +   L  +            + + + 
Sbjct: 1423 EQA-------SEKFRQEREELIQNSVWVEEKMRVVVQALQEEKGELERGFQQQLKRLAES 1475

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL----LSRQKE 596
            L  R   EL +  ++Q  +   W    +    +V + ++Q        +     L+++K+
Sbjct: 1476 LEGRYQRELQELAEQQREEKSQWEFERDEIAQEVAEAHEQLKESLASEKAVCCALTQEKD 1535

Query: 597  EIEKQIAQV--------------------TAKGEAEKTAILISILH-EVHIQIHQIESQE 635
             +EK   +                      A+ + EK    IS L  +   ++ + +   
Sbjct: 1536 LLEKNFKEEVNKLVCEREQLEKELLELRNAAQEQEEKMKEKISQLQNDHEKELKEKDEHI 1595

Query: 636  AMIEGFGKMS 645
            + +E  GK+S
Sbjct: 1596 STVEQNGKLS 1605


>gi|90192349|gb|ABD91837.1| rad50 [Physarum polycephalum]
          Length = 674

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 83/253 (32%), Gaps = 10/253 (3%)

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
           +        +R++LE  L +     ++           + +LQ  +++            
Sbjct: 11  KKGRDIVDRKRSDLESELADLREDFEEALSARKVIGDAKSKLQSDYEELKKIAESDAAAR 70

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
           +K               QS +   + + +   R+   L   +      +   ++ A +R+
Sbjct: 71  QKAQEQVKILELQNADSQSLVQDAEAAAEKIERQRRTLEADLQDVQE-KLDEEQKARVRF 129

Query: 511 ------DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
                  + EL++    +                 +         L+ LD +        
Sbjct: 130 QKQLAKTDEELRQAKLKIDDLTNATSDQYIALKRLQEENSNQHRELEALDEKTAQWNRLR 189

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
              E  + D++   ++A++   +   + +QK ++E ++  + +  +     +    L + 
Sbjct: 190 KQAEVQLEDLKAQLEEAISAKLK---VEKQKRDLENKVEDLESAADVNSANVHPDELRKK 246

Query: 625 HIQIHQIESQEAM 637
             ++ +++ Q A+
Sbjct: 247 QQEVDELKKQLAV 259


>gi|76800763|ref|YP_325771.1| dnaJ/dnaK ATPase stimulator grpE [Natronomonas pharaonis DSM 2160]
 gi|121721992|sp|Q3IUI1|GRPE_NATPD RecName: Full=Protein grpE; AltName: Full=HSP-70 cofactor
 gi|76556628|emb|CAI48199.1| dnaJ/dnaK ATPase stimulator grpE [Natronomonas pharaonis DSM 2160]
          Length = 217

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
           D    +A  E    D      + +AL +    L  +++++E ++ +  A+          
Sbjct: 28  DRDPVAAVAERAENDPASVAAELVALREEAAELETERDDLESRLKRKQAEF------QNY 81

Query: 619 SILHEVHIQIHQIESQEAMIE 639
               E   +  +  + EA++E
Sbjct: 82  KKRQEKQREKERARATEALVE 102


>gi|76802343|ref|YP_327351.1| rad50 ATPase [Natronomonas pharaonis DSM 2160]
 gi|76558208|emb|CAI49796.1| homolog 2 to rad50 ATPase [Natronomonas pharaonis DSM 2160]
          Length = 591

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 34/88 (38%), Gaps = 2/88 (2%)

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
             +    +     ++ D          + ++   L+ ++E+IE+Q+ Q     +      
Sbjct: 106 EENEIRRAVRRGEDLEDELTAPLDLQNIDEQITALTEKREDIERQLEQAERAADDAIDLE 165

Query: 617 LISILHEVHIQIHQIESQEAMIEGFGKM 644
               + E+  ++ ++ S+ + +E  G  
Sbjct: 166 --QRVQELSAELEELRSERSSMETHGDS 191



 Score = 37.6 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 83/271 (30%), Gaps = 28/271 (10%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           D         +   E+ + ++    D     E   +  +   E    E            
Sbjct: 134 DEQITALTEKREDIERQLEQAERAADDAIDLEQRVQELSAELEELRSERSSMETHGDSDS 193

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                  +QA+ D+  QL ++   +        +   R  +       +       G+  
Sbjct: 194 GST----TQALADKQAQLERQRNRKSRLESTVQRVEDRLTELDAAESGIDVPEAAVGEEL 249

Query: 478 KKPSLREAAL------LLTL--INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                    L      L +L   NH  + +++ + +ADI       + +   + S +V  
Sbjct: 250 ATVETELRRLNSDIDLLQSLYSANHRLLEEDRLELVADID------RSIAGDVVSCWVCG 303

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                E I   +           L  ++ DA       +    +++   +Q     KR +
Sbjct: 304 ADSDRETIESYVTA---------LGERLSDARAERDELQQRHEELKSRREQRQEAEKRLQ 354

Query: 590 LLSRQKEEIEKQIAQV-TAKGEAEKTAILIS 619
            +  Q+ E+E+Q+ +   +  + E+    + 
Sbjct: 355 EIRDQQSELERQLEEKRESLADVEERIEELE 385


>gi|326668417|ref|XP_683046.5| PREDICTED: myosin-10 [Danio rerio]
          Length = 1980

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 90/275 (32%), Gaps = 28/275 (10%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               R + +   EK I+      +     E E        ++ ELE  L +  + +++++ 
Sbjct: 884  EMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLVAKKQELEEILHDLESRVEEEEE 943

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    Q  + ++Q   Q    +        +K    +       + M+  ++  +     
Sbjct: 944  RNQSLQNEKKKMQSHIQDLEEQLDEEEAARQKLQLEKVTAEAKIKKMEEDILLLEDQNSK 1003

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             L+E  LL         + E   +LA+       L K+ +                    
Sbjct: 1004 FLKEKKLLE------DRVGEMTSQLAEEEEKAKNLGKVKNK------------------- 1038

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
              E    +L ++L ++ +              +      Q   L  +   L  Q  + E+
Sbjct: 1039 -QEMMMVDLEERLKKEEKTRQELEKAKRKLDAETTDLQDQIAELQAQIDELKIQLAKKEE 1097

Query: 601  QIAQVTAKGEAEKTAIL--ISILHEVHIQIHQIES 633
            ++  V A+G+ E       +  L E+  Q+ +++ 
Sbjct: 1098 ELQAVLARGDEEVAQKNNALKQLRELQAQLAELQE 1132



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 83/249 (33%), Gaps = 20/249 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L+  ++     ++++ + +   +  ++RLQQ     + +           +K  
Sbjct: 1398 EEVKRKLQKDMEVTSQKLEEKAIAFDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ 1457

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE       +     L E  +   +    N +
Sbjct: 1458 KKFDQMLAEEKTISARYAEERDRAEAEAREKDTKALSMA--RALDEALEAKEEFERLNKQ 1515

Query: 515  LQKLWSFLF----SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            L+     L                 +             L++L+ +++         E N
Sbjct: 1516 LRAEMEDLISSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVN 1575

Query: 571  IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------IL 621
            +  ++  + + L           +K  + KQ+ ++ A+ E E+    ++          L
Sbjct: 1576 MQAMKAQFDRDLQARDEQN--EEKKRALVKQVREMEAELEDERKQRALAVAAKKKLEMDL 1633

Query: 622  HEVHIQIHQ 630
             +V  QI  
Sbjct: 1634 KDVEAQIEA 1642


>gi|311267330|ref|XP_003131508.1| PREDICTED: keratin, type I cytoskeletal 10-like [Sus scrofa]
          Length = 613

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 524 SDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
           + F E+   L  EI+  + +   +   + +L R ++   +   +  A    +     +  
Sbjct: 350 AWFNEKSKELTTEINTNIEQVSSYKSEITELRRTIQGLEIELQSQLALKQSLEASLAETE 409

Query: 583 ALY-KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIESQEAMIEG 640
             Y  +   +  Q   +E+Q+ Q+ A  E E        L ++ I++ ++I++  +++EG
Sbjct: 410 GRYCVQLAQIQSQITALEEQLQQIRA--ETECQNAEYQQLLDIKIRLENEIQTYRSLLEG 467

Query: 641 FGKMSG 646
            G   G
Sbjct: 468 EGSSGG 473


>gi|212533611|ref|XP_002146962.1| nuclear segregation protein (Bfr1), putative [Penicillium marneffei
           ATCC 18224]
 gi|210072326|gb|EEA26415.1| nuclear segregation protein (Bfr1), putative [Penicillium marneffei
           ATCC 18224]
          Length = 499

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 61/198 (30%), Gaps = 11/198 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +     +       +K      +K    +    S          + R+  L   L    
Sbjct: 17  TKPDEATYKANLAKAEKEHTAAQEKLNQIKAKIESAKPSNQDSPAAKRQKELRAEL---S 73

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
           AI Q+Q    +       +L  L S L +   EQ                  + + +L++
Sbjct: 74  AIRQKQQGFKSARSSTQEKLNALDSTLKARVAEQN--NSRGKIAFKSVEEIDKEIARLEK 131

Query: 556 QVRDAGLWSATTEANIVDV------RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           QV    +     +  + D+      R+ +       K    L +Q  E++K +    A+ 
Sbjct: 132 QVDSGSMRLVDEKKALSDISSLRKQRKNFAGLDDGQKNIDALKKQIAELKKTLDNPEARA 191

Query: 610 EAEKTAILISILHEVHIQ 627
            ++K   +   L  +  +
Sbjct: 192 LSDKYNEIQQELDSIKAE 209


>gi|172039478|ref|YP_001805979.1| replicative DNA helicase [Cyanothece sp. ATCC 51142]
 gi|171700932|gb|ACB53913.1| replicative DNA helicase [Cyanothece sp. ATCC 51142]
          Length = 434

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 44/131 (33%), Gaps = 11/131 (8%)

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
           +   ++ +    E ++L  ++  P  +      L    +     Q+++      + + + 
Sbjct: 1   MTNNITPQNIEAEESILGGILLDPNAISRVADILPPEAFYVMAHQQIYQAALDLYHKDQP 60

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV-RQGYQQALALYKRFRL 590
                +   L +        +L  +V      +   +  +  V    Y   +    + RL
Sbjct: 61  CDFMTVKTWLKDY-------KLFTKVGGENKLTQLLDRTVSAVNIDRYAALVVDKYQRRL 113

Query: 591 L---SRQKEEI 598
           L   +R+ EE+
Sbjct: 114 LINAAREIEEL 124


>gi|148381557|ref|YP_001256098.1| replicative DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|153933643|ref|YP_001385934.1| replicative DNA helicase [Clostridium botulinum A str. ATCC 19397]
 gi|153935825|ref|YP_001389341.1| replicative DNA helicase [Clostridium botulinum A str. Hall]
 gi|148291041|emb|CAL85178.1| replicative DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152929687|gb|ABS35187.1| replicative DNA helicase [Clostridium botulinum A str. ATCC 19397]
 gi|152931739|gb|ABS37238.1| replicative DNA helicase [Clostridium botulinum A str. Hall]
          Length = 445

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/189 (10%), Positives = 56/189 (29%), Gaps = 16/189 (8%)

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
              K   +    E  +L  +I     + E  + L+   +  +  + ++S +   + +   
Sbjct: 3   APIKSMPQSIDAEQNVLGAMIIDKTSIAEAVEVLSSEDFYKDSHKIIFSGIIELYQKDIA 62

Query: 532 FLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEAN-IVDVRQGYQQ 580
                + + L  R             EL   +              + + +  + +   +
Sbjct: 63  VDMLTLTENLKSRDKLEAVGGVTYITELCNSIVSTANIQSYIDIIKDKSTLRRLIKSSTE 122

Query: 581 AL-ALYKRFRLLSRQKEEIEKQ---IAQVTAKGEAEKTAILISI-LHEVHIQIHQIESQE 635
            +   Y R   +    +  EK+   I+      + E  + ++     ++           
Sbjct: 123 IIENCYNRQDNVEEIIDSAEKKIFHISNQNTTTDFEPLSNVLERGFIQIENLFKNKGETT 182

Query: 636 AMIEGFGKM 644
            +  GF ++
Sbjct: 183 GVASGFREL 191


>gi|123269756|emb|CAM24808.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
 gi|168985816|emb|CAQ10594.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
          Length = 255

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 46/117 (39%), Gaps = 3/117 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 54  LQLEVARQCQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 113

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + +
Sbjct: 114 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLM 170


>gi|115438080|ref|XP_001217974.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114188789|gb|EAU30489.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 732

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 93/263 (35%), Gaps = 14/263 (5%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
           +++  +   +         +     I+ +     Y++      Q+L  K   E       
Sbjct: 226 SQSGKYWKSEFDNYRTKTTREIRRLIQYRSAAKSYARKKDTEAQRLADKLREEEEKVAEM 285

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA-----LLLTLINHPAILQEQYQE 504
            +   +                +  +L+K+ +L         LL  L+    ++  +  E
Sbjct: 286 ERHVTQLASTMAGESSNADKEKLVQELTKQTALALQYKHRVGLLRKLLEKHGVVGGEMDE 345

Query: 505 L----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           +     + R  ++  ++L         + K  + E  HQ+L      +L +  +++  + 
Sbjct: 346 IAGPPEEERPPSDTARELRKT-QQALEQAKAKIEEMEHQQLDFGKLRDLAQSSEQKASEL 404

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIAQVTAKGEA--EKTAIL 617
              +AT +  +   +Q   +     K     L +++ ++E +I +   + +A  ++   L
Sbjct: 405 AKENATLKQTLARFKQEMTKYEGRRKEKEAKLKQREAKLETRIQEYRERLKAASQERREL 464

Query: 618 ISILHE-VHIQIHQIESQEAMIE 639
              L +    +  +++ Q  M++
Sbjct: 465 EQDLKDSFEEERRRMQEQIDMLK 487


>gi|268554292|ref|XP_002635133.1| C. briggsae CBR-MYO-5 protein [Caenorhabditis briggsae]
          Length = 1904

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 9/231 (3%)

Query: 407  HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
                         LR  ++ A+ +   QL               +KN + R+     Q  
Sbjct: 1118 EDAAINAETSMAALRKKHNDAVAELSDQLDTVQKMR---GKLEREKNDKQREVDELQQSA 1174

Query: 467  MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
               +  +    +     EA L    +      +   +        ++E   L   L    
Sbjct: 1175 DVEAKQRQNCERMAKQLEAQLTDITLKSDEQARLIQELTMSKNKIHSENHDLNRQLEDAE 1234

Query: 527  VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             +       +  Q          L Q  R+ +      +  +     +R+  ++      
Sbjct: 1235 SQLSALNRIKQQQHNQMEELKRTLDQETRERQSLHSQVSNYQLECEQLRESLEEEQDA-- 1292

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIESQ 634
                + RQ  +   +I Q  AK E E   +   L     ++  ++ +++ Q
Sbjct: 1293 -KTDVQRQLSKANSEIQQWRAKFEGEGVTRAEELEETRRKLTHKVQEMQEQ 1342


>gi|323702088|ref|ZP_08113756.1| MutS2 family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323532970|gb|EGB22841.1| MutS2 family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 783

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 41/146 (28%), Gaps = 15/146 (10%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
           A + +D   L+  +  L         F        L         + L  +         
Sbjct: 461 ASVEFDVETLRPTYRLLIGRPGRSNAFEISARLG-LQPAIVQRARQFLTTEQVQVADLIN 519

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAE-------- 612
             E       +  ++A  L +    +  +  ++E+Q+ +     +    E          
Sbjct: 520 KLEQTQQAAERDREEAAILRRESEEIKERYRQLEEQLREKREAILEKAYEEASKLVRASR 579

Query: 613 -KTAILISILHEVHIQIHQIESQEAM 637
            +    +  L     Q +  + +EA+
Sbjct: 580 LEAEEAVKELRAKLAQANARDREEAI 605


>gi|301775916|ref|XP_002923380.1| PREDICTED: zinc finger protein DZIP1L-like [Ailuropoda melanoleuca]
 gi|281343684|gb|EFB19268.1| hypothetical protein PANDA_012513 [Ailuropoda melanoleuca]
          Length = 768

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 29/265 (10%), Positives = 76/265 (28%), Gaps = 27/265 (10%)

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
           L   +          +T   +                     + ++      + +R +L+
Sbjct: 158 LQTGAHSYHACHLCDKTFMNATFLRGHIQRRHAGAAEGGMRKQQEQPVEEMLEELRAKLK 217

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
               +   +     +   + A         +   Q  +       +   +E A L   I 
Sbjct: 218 WTQGELEAQREAERQRQLQEA---------EITRQKEIEAKNEFDEWKEKERAKLYEEI- 267

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
              + +  + E   +   N+ L++    L S  V +           L +    E L+Q 
Sbjct: 268 -DKLKKLFWDEFKSVANHNSALEEKLQALRSHSVAESNL------GSLQDEESEERLRQ- 319

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                   L     + +       +++ +   +       QK E+++Q  ++ A    ++
Sbjct: 320 -----TQELRVLREKMDTQKAE--WKRKMRELQGEHA--AQKRELQEQNERLQASLSQDQ 370

Query: 614 TAILISILHEVHIQIHQIESQEAMI 638
                    ++     Q++ Q  +I
Sbjct: 371 RKAAAQSQRQISALRAQLQEQARLI 395


>gi|261401816|ref|ZP_05987941.1| replicative DNA helicase [Neisseria lactamica ATCC 23970]
 gi|269208041|gb|EEZ74496.1| replicative DNA helicase [Neisseria lactamica ATCC 23970]
          Length = 161

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 12/131 (9%)

Query: 475 KLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            L       E ++L   ++ +PA        ++   +  +E + ++  +     E +   
Sbjct: 18  SLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIAKLINESRPAD 76

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L         ++L+       L S           + Y + +    R R + R
Sbjct: 77  VITVQEDLQRN------EELEAAWGFEYLISLAQNTPSAANIRRYAEIV----RERSIMR 126

Query: 594 QKEEIEKQIAQ 604
           Q  E+  +I +
Sbjct: 127 QLAEVGTEIDR 137


>gi|254454310|ref|ZP_05067747.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
 gi|198268716|gb|EDY92986.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
          Length = 860

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/209 (10%), Positives = 62/209 (29%), Gaps = 23/209 (11%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           ++ FQ          R       +  +     R + +   +    +   LR   ++  L 
Sbjct: 391 RRFFQPIARAVIEQRRDILWAKANAPRVAQVLRAISNRPDELFPDETTYLRLRYIIRRL- 449

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER-------- 544
                     + +      +    ++   L+   V+ +         RL           
Sbjct: 450 ----------ENMETTGLSDAVQDEVVLALWELAVQLEEGSLANARARLERAQERLEEAM 499

Query: 545 ---GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
                 E + +L +++R+A        A   +            +    +S+ + + +  
Sbjct: 500 RNGASDEEIAELMQELREATNDYMQMLAQNAEPNPNGTDQPDNNQESNNISQDELQALMD 559

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +I ++  +G   +   L+  L+E+   + 
Sbjct: 560 RIQELMEEGRMAEAMELMEQLNELMENLR 588


>gi|281417032|ref|ZP_06248052.1| ATPase AAA-2 domain protein [Clostridium thermocellum JW20]
 gi|281408434|gb|EFB38692.1| ATPase AAA-2 domain protein [Clostridium thermocellum JW20]
          Length = 803

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 64/175 (36%), Gaps = 23/175 (13%)

Query: 474 GKLSKKPSLREAALLLTLINHPAI---------LQEQYQELADIRYDNNELQKLWSFLFS 524
            K  +K S  E      L++ P++         +++ Y+    ++  +  ++   + + S
Sbjct: 303 RKHIEKDSALERRFQPVLVDEPSVEETIEILRGIKDYYESYHRVKISDEVIRA--AVILS 360

Query: 525 DFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           +      FLP++    L E G         LL+    +     +      A   D  + Y
Sbjct: 361 ERYITDRFLPDKAIDVLDEAGSRANIKNVVLLEYEALKEELKKVQEEKENAVSADSIEDY 420

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL------ISILHEVHIQ 627
           Q+A  L  R   L +Q +E+E++   +    +     I       +  L E+  +
Sbjct: 421 QKAADLKVRECKLLQQIKELEQKSKDMELTVDDIAYVIESWTKIPVQRLTEIEAE 475


>gi|195353350|ref|XP_002043168.1| GM11767 [Drosophila sechellia]
 gi|194127256|gb|EDW49299.1| GM11767 [Drosophila sechellia]
          Length = 405

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           D +     AA  +   +   L        +     ED     +       + L       
Sbjct: 38  DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 97

Query: 382 VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                 +  ++          AE+    ++  +  + ++        + + +     K  
Sbjct: 98  AAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 157

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                  R   + A   ++    Q   +  L +   S+K  L+   L   L N  +  Q+
Sbjct: 158 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 214

Query: 501 QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                A +   N EL+   + +           +         + ++L   G   LL+Q 
Sbjct: 215 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 274

Query: 554 DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610
             +  D  +   T         V Q  +Q   L  R +LL R  +E E+++  + T K +
Sbjct: 275 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 334

Query: 611 AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648
            ++    +    E ++ +I+ ++++     G G  S RL
Sbjct: 335 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 373


>gi|116199683|ref|XP_001225653.1| hypothetical protein CHGG_07997 [Chaetomium globosum CBS 148.51]
 gi|88179276|gb|EAQ86744.1| hypothetical protein CHGG_07997 [Chaetomium globosum CBS 148.51]
          Length = 789

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 47/419 (11%), Positives = 125/419 (29%), Gaps = 47/419 (11%)

Query: 252 FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR-LL 310
                 L+   R   R   +   +L     +  ++ +    N +    +A         L
Sbjct: 62  HDNRQNLETVYRGLARFLRTDNPLLAPSPSEFRAIAENPTDNALCEFLSAFLTAACMGSL 121

Query: 311 WKLSPRIVLCFDGDDPG--------LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
            +     +L  DG   G                +         N    V +    DPD  
Sbjct: 122 SRTYVPNILTLDGQTQGEIAKIINQKTDLRSDREGKAEEPQVDNVDTDVGIHAYRDPDLM 181

Query: 363 I-----RCYGKTAFEKLIVESLPLVDMLWKR---ETENRSFNTPDERAELEIHLKNCINH 414
                         +K   +    +D L         +      +          +  + 
Sbjct: 182 AEELGQMKGKVDTLKKQNADLQSRLDKLLDTREAMLRDLRLAQDELTTLKRARGSDVTSA 241

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           IKD          IRD++ ++ +          R  +    +   +  S+RL +    K 
Sbjct: 242 IKD------LRSEIRDKMTEIDRLEDLLEKETVRSTRYEKENETLRAKSERL-KDLEDKV 294

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            + +  + ++  L+  L N+    Q+       +       + L   +     + + F  
Sbjct: 295 TVLEHETRQQQQLIKGLENYKKKAQD-------LTVIQQRNRVLDEQILQLEQDLRNFDD 347

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            +   R  ++   E ++ L    ++  +++  ++  + D  +  ++ +      R L   
Sbjct: 348 VKAQNRKLQKEIEEKVRVLTTNEQEI-IYTLQSKNVLQDANEELKRRVEYLDSKRQLDEN 406

Query: 595 -KEEIEKQIA-------QVTAKGEAEKTAILISILH-------EVHIQIHQIESQEAMI 638
              E+++Q+           + G +     L   L         + +++ +++++ +++
Sbjct: 407 TIRELQEQLQLGDVPQPGSESPGASTTMFSLEQELETTSDPSVALRLELQRLKAENSLL 465


>gi|71414868|ref|XP_809520.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70873916|gb|EAN87669.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 464

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 18/137 (13%)

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
           +   E   L S L            +++ +++ E         ++  V      S+   +
Sbjct: 228 FSIEEAYVLLSALLE--------EKDKLIEKINEALL-----HMNNAVLKVRAPSSVPVS 274

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            + ++R+  Q+  AL +  +L   +K+E  ++IA +    ++E     +  LH +     
Sbjct: 275 QLDEIRELRQKVTALVQEVKLRDSEKKEAARRIAFLQKALDSE--QNNVKELHHLRK--- 329

Query: 630 QIESQEAMIEGFGKMSG 646
            ++ QE  IE     SG
Sbjct: 330 TMKRQERTIEQLRLSSG 346


>gi|326668399|ref|XP_689302.5| PREDICTED: trafficking kinesin-binding protein 2 [Danio rerio]
          Length = 993

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 19/213 (8%)

Query: 427 AIRDRLQQLF---QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +  R+ Q        + E +         A  +  +   +   +  L++   S      
Sbjct: 122 ELAARIGQSLLQRNHVLQERNESLEEQLAQALDQVHQLQHELAKKDELLRMVASASEESE 181

Query: 484 EAALLLTLINHP-----AILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +   T + HP     A+   Q + L + ++    E   L S   +  ++++    EE 
Sbjct: 182 TDSSCSTPLRHPVPAGAALALSQLEALQSKLQDLEEENLTLRSE--ACHLKKETITYEEK 239

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTE---ANIVDVRQGYQQALALYKRFRLLSRQ 594
            Q+L      EL +   + V      S   E    +  ++ Q   Q + L  R + L+ +
Sbjct: 240 EQQLVNDCVKELRESNSQMVSLTDELSQKNEDLMRHQEEIAQLLSQIVELQHRVKELALE 299

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           KEE+     ++  +   E    L + L E+  +
Sbjct: 300 KEEL-----RIHLQASKEAQRQLTNELKELSDR 327


>gi|298484781|ref|ZP_07002881.1| Cell wall endopeptidase, family M23/M37 [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160635|gb|EFI01656.1| Cell wall endopeptidase, family M23/M37 [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 440

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 66/201 (32%), Gaps = 10/201 (4%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN--HP 495
           + + +         +      +K  S R+ Q  L+  +            L  L+N  HP
Sbjct: 73  EVLQKELKKTETELQKLDSEKKKLNSARVEQQRLIAIQARAAYQSGRQEYLKLLLNQQHP 132

Query: 496 AILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                    Y  L+  R    +L+     L      +K    ++    + +       ++
Sbjct: 133 EKFARTLTYYDYLSQARL--EQLRNFNETLRQLANVEKDIDLQQAQLLVQKSNLDSQSEE 190

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           L +  ++     A       D +   Q+  A  +    L++  + IE+ +A+   + E  
Sbjct: 191 LAKLNQERQQALAKLN---QDYKARDQKLQARQQDQADLAKVLKTIEETLARQAREAEEA 247

Query: 613 KTAILISILHEVHIQIHQIES 633
           +   L++       +  + E+
Sbjct: 248 RQKALVAAREAEEKRQREAEA 268


>gi|255714184|ref|XP_002553374.1| KLTH0D15268p [Lachancea thermotolerans]
 gi|238934754|emb|CAR22936.1| KLTH0D15268p [Lachancea thermotolerans]
          Length = 524

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 38/366 (10%), Positives = 89/366 (24%), Gaps = 47/366 (12%)

Query: 202 FRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKS 261
                   I   +G++     R +   +     NS    +    K  Y+        +  
Sbjct: 34  CYQGKAKIIGKQKGRIYLTSQRLIYIDDEKPMTNSVSLEIDDIAKVEYSSKFLRKSARLI 93

Query: 262 IRKDVRRNSSSFI---ILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIV 318
           I      + S         +        C   +    ++   ++                
Sbjct: 94  IYLKDIADESGPRAYNYATKQPQVQRWTCPICMALNKTTKEISVNNMHEFPCENCGVVPD 153

Query: 319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES 378
                D           +           +   L                    +L   +
Sbjct: 154 FDMIADSIKSDQTGAFGENDASSSKNACSMCTFLNQPLLSNCEMCGTRLPEKDRELSAGA 213

Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438
            P   +  + ++++                      + D  L     Q + + L+   + 
Sbjct: 214 SPDKRVRIELDSKDGLIPGEPV-------FVQISFRMSDGVL---LFQTVSNLLENQERT 263

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL--LTLIN--- 493
            I +    G     NA  + +         S+L K  ++     +E  L+    ++N   
Sbjct: 264 KIQDVFNKGATSVNNADLQLKSLQILD-TDSALSKVGITSLEKSQETKLINNDIILNKAL 322

Query: 494 ----------------------------HPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
                                       HP +  ++ + L    + +   ++L+ F+ S+
Sbjct: 323 SDLSSLMALASDIEKLYNTMGRKTDHNSHPLLTVDREKFLTKDLFIDEISRELYGFIMSE 382

Query: 526 FVEQKY 531
           F EQK 
Sbjct: 383 FQEQKE 388


>gi|226329396|ref|ZP_03804914.1| hypothetical protein PROPEN_03301 [Proteus penneri ATCC 35198]
 gi|225202582|gb|EEG84936.1| hypothetical protein PROPEN_03301 [Proteus penneri ATCC 35198]
          Length = 541

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 47/130 (36%), Gaps = 4/130 (3%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
             +     E  +L     +   E +    EE      +       ++L+ Q  +    + 
Sbjct: 60  ERLEAQRQEAARLEQERLAQEAEAQRLAQEEAQ---RQAELKAEQERLEAQRAEQERLAQ 116

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
             EA  +   +  +QA  L      L +++ E E+   +  A+  A++ A   + L    
Sbjct: 117 EAEAQRLAQEEAQRQA-ELKAEQERLEQERAEQERLAQEAEAQRLAQEEAQRQAELKAEQ 175

Query: 626 IQIHQIESQE 635
            ++ Q  +++
Sbjct: 176 ERLEQERAEQ 185


>gi|254502959|ref|ZP_05115110.1| Chain length determinant protein [Labrenzia alexandrii DFL-11]
 gi|222439030|gb|EEE45709.1| Chain length determinant protein [Labrenzia alexandrii DFL-11]
          Length = 786

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 16/145 (11%)

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
           L+  L+N    L+     L     ++  +Q+L                  +      +  
Sbjct: 271 LIRELLNSGGSLETATDVL-----NSQLIQRLRERQVEIQSNIAELSITLLPNHPQIKAL 325

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
              L   DRQ+R   L     E    D R   QQAL        L R+ +E++  +A   
Sbjct: 326 QSQLSDYDRQIRSEALKVL--EGLENDARVASQQAL-------ALERRLDELK--VAAAK 374

Query: 607 AKGEAEKTAILISILHEVHIQIHQI 631
           +  +  + + L         Q+ Q+
Sbjct: 375 SNADQARLSELEREADAKAAQLDQL 399


>gi|159029829|emb|CAO90883.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 133

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%)

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             I +V          Y++     +QK+++E Q +Q+  +        L   L ++  QI
Sbjct: 18  EAIEEVEAAIASLKDRYRQINEAEQQKKDLEAQFSQIEPQWRENPLPELEKELVQIREQI 77

Query: 629 HQIE 632
            ++E
Sbjct: 78  QELE 81


>gi|146284557|ref|YP_001165510.1| hypothetical protein Ent638_4231 [Enterobacter sp. 638]
 gi|145320690|gb|ABP62836.1| hypothetical protein Ent638_4231 [Enterobacter sp. 638]
          Length = 160

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL----LSR 593
           H+++    F  + + ++++   +    A+   +   ++    + +A  K          +
Sbjct: 57  HEQILNAEFKAVNEAIEKEKAQSHASVASKRQSQQALQSSLNKLVAQLKTKTAGRADAQK 116

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           Q  ++EK I +   +   +        L ++  Q+ ++++  A
Sbjct: 117 QVTDLEKSIKEAQNRPS-DSVMQKQMELQKLQGQLAELQTTLA 158


>gi|41386691|ref|NP_776542.1| myosin-1 [Bos taurus]
 gi|75055811|sp|Q9BE40|MYH1_BOVIN RecName: Full=Myosin-1; AltName: Full=Myosin heavy chain 1; AltName:
            Full=Myosin heavy chain 2x; Short=MyHC-2x; AltName:
            Full=Myosin heavy chain, skeletal muscle, adult 1
 gi|21743235|dbj|BAB40921.2| myosin heavy chain 2x [Bos taurus]
 gi|296476685|gb|DAA18800.1| myosin-1 [Bos taurus]
          Length = 1938

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRIVESMQSTLDAEIRSRNDAIRLKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       K     +     +Q  +  +L       +  L+E   L  
Sbjct: 1624 DLNEMEIQLNHANRMAAEALKNYRSTQAILKDTQIHLDDAL-----RGQEDLKEQ--LAM 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 ITQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828


>gi|55742728|ref|NP_001003343.1| dystrophin [Canis lupus familiaris]
 gi|17865660|sp|O97592|DMD_CANFA RecName: Full=Dystrophin
 gi|3982751|gb|AAC83646.1| dystrophin [Canis lupus familiaris]
          Length = 3680

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 116/423 (27%), Gaps = 22/423 (5%)

Query: 205  RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264
             LI   ++ + +      RT+      +     ++      ++L N    L  + K   +
Sbjct: 2524 ELITAAQNLKNKTSNQEARTIITDRIERI----QSQWDEVQEHLQNRRLQLTEMLKDSTQ 2579

Query: 265  DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322
             +     +  +L +    + S  +A             T+   + L +    + +  D  
Sbjct: 2580 WLEAKEEAEQVLGQARAKLESWKEAPYTVDAIQKKITETKQLAKDLRQWQINVDVANDLA 2639

Query: 323  ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
                      D   +    + I+     +          L                 F  
Sbjct: 2640 LKLLRDYSADDTRKVHMITENINASWASIHKRLSEREAALEETHRLLQQF-PLDLEKFLA 2698

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
             + E+    ++L     + R         EL    ++    I+     Y+       ++ 
Sbjct: 2699 WLTEAETTANVLQDATHKERLLEDSKGVRELMKQWQDLQGEIEAHTDIYHNLDENGQKVL 2758

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492
            +  +          R    N +  + +  S  +           K+  L    LL+ L +
Sbjct: 2759 RSLEGSDDAALLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 2818

Query: 493  NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549
                + ++     +   ++  N+  +     L +          E +   L E+    L 
Sbjct: 2819 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 2877

Query: 550  -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             L Q  R++         T        +   Q   L        R+ +E  +++ ++   
Sbjct: 2878 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTQWEKLNVHSADWQRKIDEALERLQELQEA 2937

Query: 609  GEA 611
             + 
Sbjct: 2938 TDE 2940



 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L +  +K   +     +  K        K  S R   ++L+  +      + E  +   
Sbjct: 1703 LLDESEKKKPQQKEDILKRLKAEMNDIRPKVDSTRDQAANLMANRGDHCRKVVEPKISEL 1762

Query: 491  -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                  I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 1763 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMSEDN 1822

Query: 546  ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                 ELL++ D   +         E  I                        +   Q  
Sbjct: 1823 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 1882

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1883 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 1934


>gi|117928313|ref|YP_872864.1| excinuclease ABC subunit B [Acidothermus cellulolyticus 11B]
 gi|117648776|gb|ABK52878.1| Excinuclease ABC subunit B [Acidothermus cellulolyticus 11B]
          Length = 705

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 24/46 (52%)

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            + L+R  EE+ +Q+    A+ + E  A L   + E+  ++  +E+
Sbjct: 656 RQELTRLIEELTEQMHAAAAELQFELAARLRDEIRELKKELRAMEA 701


>gi|298207258|ref|YP_003715437.1| glutamyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
 gi|83849894|gb|EAP87762.1| glutamyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
          Length = 1146

 Score = 41.4 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 8/142 (5%)

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP--EEIHQRLCERGFGELLKQLD 554
             ++  + L   + DN E   +   L   F   +  L   EE+ + L +       ++L 
Sbjct: 559 FSKKMKENLQQFQQDNPENDPVKQKLEERFQRNEEQLKKNEELLEELQKVQDKINKEELS 618

Query: 555 RQVRDAGLWSATTEANIVDVRQG------YQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            ++      +   E N+  + +        ++AL + +    L++++EE+ K       K
Sbjct: 619 EKLEKLAKQNQNEEKNLEQLLELTKRYYVEKKALKVAEDLEKLAQKQEELSKNDGDENTK 678

Query: 609 GEAEKTAILISILHEVHIQIHQ 630
              E+       L E    + +
Sbjct: 679 EAQEELNKEFKKLQEDLKDLEE 700


>gi|302849266|ref|XP_002956163.1| hypothetical protein VOLCADRAFT_97128 [Volvox carteri f. nagariensis]
 gi|300258466|gb|EFJ42702.1| hypothetical protein VOLCADRAFT_97128 [Volvox carteri f. nagariensis]
          Length = 2003

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/196 (10%), Positives = 57/196 (29%), Gaps = 4/196 (2%)

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP--AILQEQY 502
               R  K +   R    P     + +    +L       E+ +   L  +    +   + 
Sbjct: 1230 QPLRGEKSDEFKRRYLPPEVVAERDASNASRLDDIRQQWESLVAADLAANDGRKLAAMRR 1289

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG--ELLKQLDRQVRDA 560
              +    Y     +   S L  D V             L          + +++ +    
Sbjct: 1290 NAVKVEEYKKAVYEAYASGLVRDVVYGGAVRVAANLALLDNAEARYLAEVDRINAENARL 1349

Query: 561  GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
                A          + + QA+  ++  R ++ ++ E +++ A+   +    +       
Sbjct: 1350 RQLHAEEVEEKRAKEEAHGQAVRRWQEAREVALRQHEADRERARAEHEANINRLKAEWRA 1409

Query: 621  LHEVHIQIHQIESQEA 636
              +  ++++     EA
Sbjct: 1410 KTQQTLELNDARLTEA 1425


>gi|300710201|ref|YP_003736015.1| seryl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299123884|gb|ADJ14223.1| seryl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 457

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLLSRQKEEIEKQIAQV 605
           L + + R+  +   W+   +   VD+ +     ++   L      L  ++ E+  +I ++
Sbjct: 2   LDRSILREDPERVRWALDVKGVDVDLDEVLAVDEEWRELKAEGDSLRHERNEVSSEIGEL 61

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
              GE EK    I    E+  ++  +E +   +EG
Sbjct: 62  KQAGEEEKAQQAIERSSELKAELQDLEDRADELEG 96


>gi|291242012|ref|XP_002740905.1| PREDICTED: structural maintenance of chromosomes 3-like
           [Saccoglossus kowalevskii]
          Length = 657

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 42/391 (10%), Positives = 115/391 (29%), Gaps = 43/391 (10%)

Query: 247 NLYNFFGALN--YLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            L           + +  +      +    +++E +             +         +
Sbjct: 6   VLNGIDSIRRILEIFRRKKIHADVVNGYNGLMIENFQTAAKFNTCVEDALPMISKLEYEK 65

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                   +  + ++C + +     A  + +D V              L+ G       R
Sbjct: 66  KFDMPFKHVFGKTMICRNMEVATQFARTQNLDCVTLE--GDQVSRRGALTGGYYDSRKSR 123

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              +     L  +S          + E+      ++  ++E+ + + ++ ++  + R   
Sbjct: 124 VEMQRNIIDLREKSE---------QQESAYEEHREKLQKVEVEITSMMSEMQKLETRNRK 174

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           ++ I ++++   +    E     R  +   R  +    S + M+S+    +         
Sbjct: 175 NKDIYEQMRSDLRIQREESQVIQRSLQPKERRLNSLKSSLQAMKSTAQSLEEEMGTE--- 231

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             LL  L  H                   E+  L   +     + K    + ++QR+   
Sbjct: 232 --LLSQLSVHEQ----------------KEVDALNDEIKDLTQQNK----DTLNQRIRLE 269

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
           G     + L              E + +      Q+   +    +  SR  EE +K++ +
Sbjct: 270 GQKNKFENLLSNNLMRKRERLLQELHDISAEDKRQKLETMSIDLQGASRNIEENKKRLDE 329

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +       +   L     E+  ++ + ++ E
Sbjct: 330 MEM-----QVEELNKEKQELQTELEEWKTNE 355


>gi|255953611|ref|XP_002567558.1| Pc21g05120 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589269|emb|CAP95409.1| Pc21g05120 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1448

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 527  VEQKYFLPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALA 583
             E+         Q + E         K+L+ +     L      +A    +R   +Q   
Sbjct: 1030 EEESKADQAAREQAIKEEQEVQEAETKRLEGEASQRELEFQREKDAQAERLRALEEQVRQ 1089

Query: 584  LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE--VHIQIHQIESQEAMIEG 640
               + +   R++EE  +Q  +  A  EA++  +  +   E  +  ++  ++   +  EG
Sbjct: 1090 GKIKKQEEKRRREEASRQAKEQEAMLEAQRVELEAAKERERQLQRELEGLDESSSDDEG 1148


>gi|194665851|ref|XP_599825.4| PREDICTED: WD repeat domain 65-like [Bos taurus]
          Length = 1247

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 32/333 (9%), Positives = 99/333 (29%), Gaps = 26/333 (7%)

Query: 306  QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
            ++  L   +   +   D +            L     +             +D    +  
Sbjct: 707  RVEELKMENEYQLRLKDMNYSEKIKELTDKFLQEMESLKTKNQVLKTEKEKQDV---LHR 763

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
                         L  ++    ++         + + + +   +     ++D        
Sbjct: 764  ERMDDLLDKQSRELQDLECCNNQKLLLEYEKYQELQLKSQRMQEEYEKQLRDN---DETK 820

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
                + L + ++  + E +      +++ R + ++    +         ++    +  E 
Sbjct: 821  SQALEELTEFYEAKLQEKTTLLEEAQEDVRQQLREFEETKKQIEEDEDREIQDIKTKYEK 880

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L           +++ +    ++ +   ++K +S L  +  E +    E +     +  
Sbjct: 881  KL-----------RDEKESNLRLKGETGIMRKKFSSLQKEIEE-RTNDIELLKG--EQVK 926

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQ 601
               ++K L++ +          +  I D  +         +       +L  + +E++KQ
Sbjct: 927  LQGVIKSLEKDIMGLKREIQERDETIQDKEKRIYDLKKKNQELEKFKFVLDYKIKELKKQ 986

Query: 602  I--AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            I   +   K   E+   + + L   H Q  Q+E
Sbjct: 987  IEPRENEIKVMKEQIQEMEAELERFHKQNTQLE 1019


>gi|118347380|ref|XP_001007167.1| hypothetical protein TTHERM_00214710 [Tetrahymena thermophila]
 gi|89288934|gb|EAR86922.1| hypothetical protein TTHERM_00214710 [Tetrahymena thermophila SB210]
          Length = 1465

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 121/328 (36%), Gaps = 27/328 (8%)

Query: 319  LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED-------PDSFIRCYGKTAF 371
              F GD+ G     K  D+     +   + N    S+ ED        +           
Sbjct: 757  YLFTGDEDGQVFMLKIADVFENGELIDFKKNSATNSKNEDKLRIEQTSNDLFLAKISKIM 816

Query: 372  EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI---KDQKLRYYYSQAI 428
            EK  ++     +++   +T+       D   + ++   N    I    D K++  +    
Sbjct: 817  EKNELKKKLQFEVVKLEQTKKIETQKLDNMYKQKMDAINKDFQITMESDMKMKDTFVSKS 876

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             D   +L+++++TE   Y +  ++  +   QK   +      L      +K   +    L
Sbjct: 877  NDEYNKLYEQFVTEQKKYKQDIEQLEQLHKQKIEYENQRNKDLE--DEIEKIKQKHKDDL 934

Query: 489  LTLINHPAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              L+N      +  ++L  ++ +   + QK+     +     K F       RL  +   
Sbjct: 935  QNLLN------QHKEDLKKLKMNFYEKCQKIQVKYSNVVDNTKNF-GNAFITRLENQDV- 986

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            E  K++D ++++     +  +    D+ +  Q  +   K++  L R+ E+++K+I +   
Sbjct: 987  EYEKEIDEKIKELKEEISKIKRVNEDLEKKNQDLI---KQYEKLKREDEDLQKKIDEQLK 1043

Query: 608  KGEAEKTAILISILHEVHIQ---IHQIE 632
            +    +   L +    + +Q   + +++
Sbjct: 1044 RHNEIRMENLKNDQDILKMQHQLLERLQ 1071


>gi|326488319|dbj|BAJ93828.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 22/179 (12%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD-- 525
             S+   +   +   +EA LL  L       +     L  +    + L+++   L +   
Sbjct: 70  ADSIATREAEDEWGQKEAGLLSQLEELSRGKRRAEDRLLQLE---SSLEEMRGMLLNAER 126

Query: 526 FVEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
              +     +++  RL E     E++ +L+R++ +        +A I  VR   ++ +  
Sbjct: 127 LAAEHDAEKKQLLGRLDEEMKKDEVVHRLEREIGEK-------DAEISRVRGRLEEEMKK 179

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-----ILISILH----EVHIQIHQIESQ 634
            +  R L R+ EE + +I++   + E E         L   +     E+  +  ++E +
Sbjct: 180 DEVIRRLQREIEEKDSEISRARGRLEEEMKKDEVIHRLEREIEVKAAEISRERGRLEEE 238


>gi|323942339|gb|EGB38510.1| prophage tail length tape measure protein [Escherichia coli E482]
          Length = 1077

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 5/122 (4%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L + L +   +Q          ++    F    +++    R+    +           + 
Sbjct: 146 LVAALRNLEQQQDELNAAFASGKINGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQ 205

Query: 578 YQQALALYKRFRLLS---RQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIE 632
                 L  +   +     +  E +KQ+ +  AKG    E    L   L  +  ++   +
Sbjct: 206 VAALQRLIAQLDPVGTAFNRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEVTQ 265

Query: 633 SQ 634
           SQ
Sbjct: 266 SQ 267


>gi|296447109|ref|ZP_06889041.1| replicative DNA helicase [Methylosinus trichosporium OB3b]
 gi|296255378|gb|EFH02473.1| replicative DNA helicase [Methylosinus trichosporium OB3b]
          Length = 501

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 44/165 (26%), Gaps = 16/165 (9%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           + ++        +        E ALL  ++ +          L    +     ++++   
Sbjct: 12  TLQVAPLDAPSYRTPPHNIEAEQALLGAILVNNDAFDRVSDFLQAAHFSEELHRRIFEVC 71

Query: 523 FSDFVEQKYFLPEEIHQRLCERGF------GELLKQLDRQVRDAGLWSATTEANIVDVR- 575
                  +      +   L +            L +L R+     + +      I D+  
Sbjct: 72  SQIIRAGRVATVVTLKTHLGDIELPGGLTMQAYLARLAREATTI-INAEDYGRTIHDLAV 130

Query: 576 --------QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
                   +    A           +Q EE E+++  V   G  +
Sbjct: 131 RRELIVIGEDVVNAAYDAPIDSTPRQQIEEAERRLYSVAETGRYD 175


>gi|281342567|gb|EFB18151.1| hypothetical protein PANDA_019603 [Ailuropoda melanoleuca]
          Length = 1524

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 34/311 (10%), Positives = 100/311 (32%), Gaps = 33/311 (10%)

Query: 355  RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            + +D + F     +      +        +  +     ++    + +   EI L++    
Sbjct: 886  QNKD-NEFALVKHEKEAVICLQNEKDQKLLEMENIMHTQNCEINELKQSREIVLEDLKKL 944

Query: 415  IKDQKLRYYYSQAIRD-----RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
              +   +    +          L++L       H+        + R   +K   +   + 
Sbjct: 945  HVENDEKMQLLRTELQCLEQSHLKELEDALHVRHTQEFEKVMTDHRVSLEKLKKENQQRI 1004

Query: 470  SLVKGKLSKKPSLREAALLLTLINHPAILQ---EQYQELADIRYDNNELQKLWSF----- 521
              ++   +     +E  L    +    +     +   ELA    + +E++ L        
Sbjct: 1005 DQIQESHATVIQEKEQQLEELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRAQQ 1064

Query: 522  ------LFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATT-----E 568
                  L     E       ++ Q++ +    +   L +L   +        +      E
Sbjct: 1065 KETLKSLLEQETENLRTEISKLKQKIQDNNENYQVGLAELRTLMTIEKDQCISELISRHE 1124

Query: 569  ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
                 ++    +  +L+ +   +    + ++++IA++ +K +AE +A+      ++  Q 
Sbjct: 1125 EESDILKAELNKVTSLHHQAFEIE---KNLKEEIAELQSKLDAELSALEKQKDEKLTQQE 1181

Query: 629  HQIESQEAMIE 639
             +    EA+I+
Sbjct: 1182 EKY---EAIIQ 1189


>gi|256005875|ref|ZP_05430822.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 2360]
 gi|255990144|gb|EEU00279.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 2360]
 gi|316940931|gb|ADU74965.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 1313]
          Length = 803

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 64/175 (36%), Gaps = 23/175 (13%)

Query: 474 GKLSKKPSLREAALLLTLINHPAI---------LQEQYQELADIRYDNNELQKLWSFLFS 524
            K  +K S  E      L++ P++         +++ Y+    ++  +  ++   + + S
Sbjct: 303 RKHIEKDSALERRFQPVLVDEPSVEETIEILRGIKDYYESYHRVKISDEVIRA--AVILS 360

Query: 525 DFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           +      FLP++    L E G         LL+    +     +      A   D  + Y
Sbjct: 361 ERYITDRFLPDKAIDVLDEAGSRANIKNVVLLEYEALKEELKKVQEEKENAVSADSIEDY 420

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL------ISILHEVHIQ 627
           Q+A  L  R   L +Q +E+E++   +    +     I       +  L E+  +
Sbjct: 421 QKAADLKVRECKLLQQIKELEQKSKDMELTVDDIAYVIESWTKIPVQRLTEIEAE 475


>gi|300774865|ref|ZP_07084728.1| replicative DNA helicase DnaB [Chryseobacterium gleum ATCC 35910]
 gi|300506680|gb|EFK37815.1| replicative DNA helicase DnaB [Chryseobacterium gleum ATCC 35910]
          Length = 528

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 24/76 (31%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           S+  GK+       E  ++ T +     L      L    + +   Q ++S +   +   
Sbjct: 20  SIADGKMPPNAVDFERLVIGTFLIDKKGLDHSIDLLTPEVFYDPRHQVIFSTILKLYEGN 79

Query: 530 KYFLPEEIHQRLCERG 545
                  I Q L +  
Sbjct: 80  HPVDLMTIIQDLKKED 95


>gi|194379984|dbj|BAG58344.1| unnamed protein product [Homo sapiens]
          Length = 574

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 96/298 (32%), Gaps = 32/298 (10%)

Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
            GN         G+   +  R     A       +L       KR  E    +   + A+
Sbjct: 1   MGNSEGCNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSE-KRTLEGELHDLRGQVAK 59

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           LE  L      ++D+ LR        +RLQ + ++   + + Y    ++  R  + +   
Sbjct: 60  LEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVE 116

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
               +    + +L+                   +  +   ++   +    EL+K +S   
Sbjct: 117 IDNGKQREFESRLADALQ--------------ELRAQHEDQVEQYK---KELEKTYSAKL 159

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            +  +        +     E     + +  L  Q+       A  EA + D+     +  
Sbjct: 160 DNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARER 219

Query: 583 ALYKRFRL-LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ----IESQE 635
              +R      R+  E+  ++ Q     + ++   L+ I   + ++IH     +E +E
Sbjct: 220 DTSRRLLAKKEREMAEMRARMQQ-----QLDEYQELLDIKLALDMEIHAYRKLLEGEE 272


>gi|168010809|ref|XP_001758096.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690552|gb|EDQ76918.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 552

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 60/190 (31%), Gaps = 11/190 (5%)

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL-ADIRYDNNELQ 516
           D        +++              E   L        + ++  +EL  ++   + +L+
Sbjct: 23  DPVKVELNRLENEARDKDRKLAEVTAECKALKLA---ERLREKAVEELAEELDKVDEKLK 79

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
                L S  +E K    E+      +      L+++    +D  L S       ++   
Sbjct: 80  AAEDLLESKNLELKKLNDEKKAALAAQSAAELTLRRVQAAQKDEKLPSIEEILAPLEAEL 139

Query: 577 GYQQALALYKR--FRLLSRQKEEIEKQIAQVTAKGEAEKTAI-----LISILHEVHIQIH 629
              +      +   R L R  +  E  + +     +A +        L++   E+  QI 
Sbjct: 140 KIARQEIAKLQDTNRALDRLTKSKEAALLEAERSIDAAEAKASQVDDLLNRNQELMKQIE 199

Query: 630 QIESQEAMIE 639
             + +  +++
Sbjct: 200 ICQEENKIMD 209


>gi|116235424|ref|NP_001070722.1| sarcolemmal membrane-associated protein [Danio rerio]
 gi|115528624|gb|AAI24764.1| Zgc:153887 [Danio rerio]
          Length = 823

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 91/279 (32%), Gaps = 21/279 (7%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-- 416
           P   +          +   +  +         +    +  + R   ++        I   
Sbjct: 94  PCEVLSGDIIQFGVDVTENTRKVTHGCIVSTIKLFLPDGMEARRRSDVVPAPLPLAIDKV 153

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
                  YSQ +    Q L +    E     +               QRL+ S+    + 
Sbjct: 154 SANTPSMYSQELFQLSQYLQEALHREQMLEQKL-----------ATLQRLLASTQEASES 202

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           S +  + E  LL  L     ++  Q Q  +  + ++   ++L   L  D    +    E 
Sbjct: 203 SWQALIDEDRLLSRL----EVMGNQLQAYSKNQTEDGIRKELV-ALTEDKHNYETTAKES 257

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + + L E+   E++++L    R                 +  ++   L  ++     + +
Sbjct: 258 LRRVLQEKI--EVVRKLSEVERSLSNTEDECTHLREMNERTQEELRELANKYNGAVNEIK 315

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           ++ ++I     K E E T   ++   E+ ++I ++E +E
Sbjct: 316 DLTEKIKLAEDKHE-ELTQKGLNEKKELQMRIEEMEEKE 353


>gi|86609812|ref|YP_478574.1| recombination and DNA strand exchange inhibitor protein
           [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558354|gb|ABD03311.1| MutS2 family protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 805

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 78/238 (32%), Gaps = 17/238 (7%)

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
                   I D++            +    ++            +      D+ G     
Sbjct: 398 WFDGVYADIGDEQSLQQNLSTFSGHI----RRISRIVQALQSAPEPALVLLDEVGAGTDP 453

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLI-NHPAILQEQYQ----ELADIRYDNNELQKLWSF 521
            + + +   L     L E ALL     ++  +   +YQ    E A + +D   L   +  
Sbjct: 454 TEGAALAAGLL--EYLSERALLTLATTHYGELKALKYQHPCFENASVEFDEVTLAPTYRL 511

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L+            +  Q L         + L  + +   + +   EA    + +   Q 
Sbjct: 512 LWGIPGRSNALAIAQRLQ-LDPEILRRAQRHLQGESQVDRVIAGL-EAQRAQLEERAAQV 569

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ----IHQIESQE 635
            +L++    L +Q ++  +QIA+  A+ E ++   L ++L     +    I +++  E
Sbjct: 570 GSLHRELESLYQQMQQRSRQIAEREARLEQKQNQELQALLAAARQEVAAAIRRLQQGE 627


>gi|73959613|ref|XP_547293.2| PREDICTED: similar to Interferon-induced guanylate-binding protein
           1 (GTP-binding protein 1) (Guanine nucleotide-binding
           protein 1) (HuGBP-1) isoform 1 [Canis familiaris]
          Length = 591

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/264 (8%), Positives = 76/264 (28%), Gaps = 10/264 (3%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDER---AELEIHLKNCINHIKDQKLRYYYSQAIR 429
             + +++   D    +  +  +    +        E            + +   + + + 
Sbjct: 324 AAVQKAIAHYDQQMNQMVKLPTETLQELLDLHRACEKEAIEFFMSNSFKDIDQLFQKDLA 383

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            +L++   ++  ++         +            + Q    K    +    +   L  
Sbjct: 384 AKLEKKRDEFCKQNLQASTDRCSDLLKEIFGPLEDSVKQGVYSKPGGYRLFIQKTQELKK 443

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           T +  P    +  + L     D+ E   +   +            E   +R+        
Sbjct: 444 TYLQKPRKGIQAEEVL-QEYLDSKE--SMTDAILQTDQTLTEKEKEIEVERVKAESAQAA 500

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ---VT 606
            K+L+             E +  +  +   + +    R +LL  Q+  +  ++ +   + 
Sbjct: 501 TKRLEEMQMKNQQIMEQKERSYQEHVKQLTEKME-RDRIQLLEEQERTLALKLQEQARLL 559

Query: 607 AKGEAEKTAILISILHEVHIQIHQ 630
            +G   ++  L + +  +   + +
Sbjct: 560 KEGFQNESKRLHNEIQNLQQNMAR 583


>gi|80159816|ref|YP_398560.1| conserved hypothetical phage-related protein [Clostridium phage c-st]
 gi|78675406|dbj|BAE47828.1| conserved hypothetical phage-related protein [Clostridium phage c-st]
          Length = 1662

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 37/334 (11%), Positives = 92/334 (27%), Gaps = 18/334 (5%)

Query: 303  TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR-GEDPDS 361
                 R L + S +  L  + +          I               + L++   D  +
Sbjct: 1047 DYENTRELSEKSAQDELKMEQEINATIKERIEIQKASYDEQLKLEQKQIDLAQVNLDVFN 1106

Query: 362  FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                      +K  +    +              N    +           N +      
Sbjct: 1107 IYEKENVDYIKKAQLTGKLIAQQKSYLVQMIGIRNEITRQRNALQENTLEWNLLNS---- 1162

Query: 422  YYYSQAIRDRLQQLFQKYIT--EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                     ++ +  +      E     R  + N     Q      L +    + +L+K+
Sbjct: 1163 --LLDEYEGKINESNKNLQQTLETLEEIRKSQLNELSNMQDKIVNALKKQYEKELELAKE 1220

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               +E  LL   +N   +   +      +     E QK    L  +    +     +I  
Sbjct: 1221 KKAKE-LLLAKNLNDEQLKLIKDGSKTALEIFEEEHQKKMDLLNEELKSYEEIYNAKIKD 1279

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +    +  K+L+++ ++        +A ++D       +L    +   L  + ++ +
Sbjct: 1280 IDDKESEDKYSKELNKKQKEKSKLQIQHDALMMD------SSLEAKAKRESLLEEIKKKQ 1333

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            + I Q     +       +    E+  +  +I+S
Sbjct: 1334 EDIDQFQHDRDITLRKKNLKE--ELDAKKKKIQS 1365


>gi|2773363|gb|AAB96783.1| microtubule binding protein D-CLIP-190 [Drosophila melanogaster]
          Length = 1690

 Score = 41.4 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 80/242 (33%), Gaps = 20/242 (8%)

Query: 405  EIHLKNCINHIKDQKLR-YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
               ++     IKD  ++     + + ++LQ    +   + +      +   + ++ +G  
Sbjct: 1303 LQQVQEANGDIKDSLVKVEELVKVLEEKLQAATSQLDAQQATNKELQELLVKSQENEG-- 1360

Query: 464  QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLW 519
              L   SL   +  ++       L   L      L+E   +L +    +        ++ 
Sbjct: 1361 -NLQGESLAVTEKLQQLEQANGELKEALCQKENGLKELQGKLDESNTVLESQKKSHNEIQ 1419

Query: 520  SFLFSDFVEQKYFLPE--EIHQRLCE--RGFGELLKQLDR--QVRDAGLWSATTEANIVD 573
              L     +++    E  ++ ++L +  +   EL K L +   + + G    T  A    
Sbjct: 1420 DKLEQAQQKERTLQEETSKLAEQLSQLKQANEELQKSLQQKQLLLEKGNEFDTQLAEYQK 1479

Query: 574  VRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            V      A ++       L  +  E+E  + Q       +          E+  Q+  +E
Sbjct: 1480 VIDEMDDAASVKSALLEQLQNRVAELETALRQAN-----DAQKTAYLETKELRRQLESLE 1534

Query: 633  SQ 634
             +
Sbjct: 1535 LE 1536



 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/271 (10%), Positives = 89/271 (32%), Gaps = 16/271 (5%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            + +   E+    +L      +  E          +       +      +++        
Sbjct: 976  HAELQAERSSSSALHTKLSKFSDEIATGHKELTSKADAWSQEMLQKEKELQE-------L 1028

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            +      Q    K   E     + ++++ ++  ++    +     L  G  +    L+E 
Sbjct: 1029 RQQLQDSQDSQTKLKAEGERKEKSFEESIKNLQEEVTKAKTENLELSTGTQTTIKDLQER 1088

Query: 486  ALLLTL-INHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
              +    + H   +  E  Q++AD++    E  ++ +   S    +   + E +     E
Sbjct: 1089 LEITNAELQHKEKMASEDAQKIADLK-TLVEAIQVANANISATNAELSTVLEVLQAEKSE 1147

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                  L +++  +    L    T     ++++ + Q     K+F  L  + ++ ++   
Sbjct: 1148 TNHIFELFEMEADMNSERLIEKVTGI-KEELKETHLQLDERQKKFEELEEKLKQAQQSEQ 1206

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++      +++      L E+   + +++  
Sbjct: 1207 KL-----QQESQTSKEKLTEIQQSLQELQDS 1232


>gi|322823285|gb|EFZ29071.1| hypothetical protein TCSYLVIO_4689 [Trypanosoma cruzi]
          Length = 552

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 62/204 (30%), Gaps = 24/204 (11%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
           + +     +     +      Q+   +   ++   +  +       E A L  L+     
Sbjct: 216 EVMLRARAFLDGEAQRIAAPWQQYTERDETETGNGRLAVENATPRNERAELQVLLRERE- 274

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
            +   +++       +EL +L   L      ++     E+          EL   L  + 
Sbjct: 275 -EYFAEQI---ELKEHELTQLRRALQHAEANEEKLTEAEVR-------ITELESCLAEKE 323

Query: 558 RDAGLWSATTEANIVDVRQGYQQ-ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
            +  +W    + N ++  +  QQ  +  +     L  +            +    +    
Sbjct: 324 EELYMWKGNIDKNPLEASEETQQMEMYFHTGQEELCDRI----------ESPKNEDIINA 373

Query: 617 LISILHEVHIQIHQIESQ-EAMIE 639
           L   L E   ++ +++ Q EA  E
Sbjct: 374 LQRELSETQAKLREMQQQWEASRE 397


>gi|255513288|gb|EET89554.1| SMC domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 767

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 12/218 (5%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            I   + ++      + +   +        +                 + S K    E  
Sbjct: 251 KIEKEIAEIESTIKAKKNETKKINDMGIDGKVVDAELAESTGREHKLSESSAKIKKEEIE 310

Query: 487 L---LLTLINHPAILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           L   L  L     +  ++ +E   I     N  +++L++ L     + +  + E      
Sbjct: 311 LQKSLAALHERMDLNTKKIEEKRRIEKEIGNGAVEELYAKLKECSEKMEKAIAEAASGSS 370

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                 EL+ +LD   R  G+           +R+   +     +    L  +   ++++
Sbjct: 371 RAEELKELIAELD---RHKGVCPVCEREFEEGLRERLLK--KNKEELESLKGKLVALKQE 425

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             +  ++ E EK    I  L ++  ++ + +  E ++E
Sbjct: 426 TKR--SQDEKEKIESQIKKLEKLSGRLEEYKDVERLVE 461



 Score = 37.6 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 30/253 (11%), Positives = 86/253 (33%), Gaps = 25/253 (9%)

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
               +        ++ LR    +  ++ L+ L  K +       R   +  +   Q    
Sbjct: 384 RHKGVCPVCEREFEEGLRERLLKKNKEELESLKGKLVALKQETKRSQDEKEKIESQIKKL 443

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           ++L    L + K  ++    +  ++  ++       +       ++ + +EL  +   + 
Sbjct: 444 EKL-SGRLEEYKDVERLVESDRKMVEPMVK------KVRDTEELLKKNESELDGVRDKIR 496

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               + +    +    +       +L K+L+               ++  ++  +    +
Sbjct: 497 ELKSKHETLKRKAELDKEIVAVEKDLAKKLEEHRSMKTDQD-----SVDALQDRFNTKNS 551

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE-------- 635
            Y++   + ++  +  + + Q       ++T  L + L E+  +I   + QE        
Sbjct: 552 EYQKVLAIIQESSKSLRMLKQQL----KDRTDQL-NSLIEIEKRIKARKGQEDLLIKFKG 606

Query: 636 AMIEGFGKMSGRL 648
           A+IE  G +  RL
Sbjct: 607 AIIETEGLLRNRL 619


>gi|226294457|gb|EEH49877.1| anucleate primary sterigmata protein B [Paracoccidioides brasiliensis
            Pb18]
          Length = 1946

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 73/224 (32%), Gaps = 13/224 (5%)

Query: 420  LRYYYSQAIRD-RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +    Q I D +L Q         +G   + +  +R +D+          S       +
Sbjct: 934  EKERLYQEIEDLKLGQRRADGGRSVAGDSIFERSVSRAQDRSNSHTSDGAKSRASDAEWE 993

Query: 479  KPSLREAALLLTL----INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
               ++   L   +    + + ++  +  + ++D+      L + +        E    + 
Sbjct: 994  SLEIKNGELRDHVSTLKLENQSLRAQLDECMSDLE----ALDRAYQADVEQAEEDLQTMQ 1049

Query: 535  EEIHQRLC-ERGFGELLKQLDRQV-RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             E  Q L       E L+ L  +   +        +  I + ++   +     +  + L 
Sbjct: 1050 FERDQALQISEEREEALQDLKAEAQEEIDALGDELDQKIDECQRMEVELSNQQENLKALQ 1109

Query: 593  RQKEEIEKQIAQVT--AKGEAEKTAILISILHEVHIQIHQIESQ 634
             +     + I ++   A+   +K   +   L + + ++ Q+E  
Sbjct: 1110 AEMRSASEGIIRLEQDAQNNLQKYKSVQQELDDANRELEQMEKS 1153


>gi|295659982|ref|XP_002790548.1| calmodulin-binding coil-coil protein [Paracoccidioides brasiliensis
           Pb01]
 gi|226281423|gb|EEH36989.1| calmodulin-binding coil-coil protein [Paracoccidioides brasiliensis
           Pb01]
          Length = 1234

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 94/286 (32%), Gaps = 21/286 (7%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              +    KL  +   L +    +  +       ++  EL+  L      ++D     ++
Sbjct: 446 HKVEEELNKLRKDHSILHENFQDKTRQAA--KFKEKIQELKEELSAEKARMQDDLDLAHH 503

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSKKPSL 482
            + I  R +      + +     +  +        +  +     +SL +   +  +K S 
Sbjct: 504 ERDIARRERDDVSARLRQADDEIQSGENAKDVLQTRHDALTSESASLQRDLAQAKEKISN 563

Query: 483 REAALL----LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS----DFVEQKYFLP 534
            E  +      ++ +   +L +   E+  +   ++E+  L   +         ++  +  
Sbjct: 564 LEKQIEVERERSMNDKDELLLQHRNEIDQL---HDEIDSLKHDIEDQEGQHAADRDRWDS 620

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LLSR 593
            + +  L +    + +    R +       +T       ++         + R   LL+R
Sbjct: 621 MKRNLELQKEKVEQQIFGYKRTIDKLQGVESTLSGREEKLQNIVDSEKERHLREEQLLNR 680

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           Q +E+   IA      E+++       L     ++   + +E+ ++
Sbjct: 681 QIKELNDDIASRRQSAESQR-----QELMSAKEELRVAKREESSLK 721



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 12/144 (8%)

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELL 550
                L+   Q+LAD + +  ELQ   +       E      E++ + L   E    EL 
Sbjct: 258 QCKKSLRRAQQDLADCQLEMQELQA--NANRKHVNEDTLKELEQVREELESKENELHELQ 315

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           ++LD         +      I D++   +Q   L    R    +   ++          E
Sbjct: 316 EELDTLKETKSEQAQQLRDEIQDLQYELRQKNELIDNQRD---EIGSLKG-----NQHNE 367

Query: 611 AEKTAILISILHEVHIQIHQIESQ 634
               + L + L     Q+ ++++ 
Sbjct: 368 KNSASELEAELQRAKQQLEELQNS 391


>gi|224134248|ref|XP_002327792.1| predicted protein [Populus trichocarpa]
 gi|222836877|gb|EEE75270.1| predicted protein [Populus trichocarpa]
          Length = 1462

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 52/431 (12%), Positives = 132/431 (30%), Gaps = 30/431 (6%)

Query: 222 GRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM 281
           GR     +        E     + K  ++       ++     + +R+ ++     +   
Sbjct: 391 GRVSKNDDVSGSKKYEEGTCERENKIEFSVMEERKKIRIPDSVEGKRHLNAAEKSSDEKH 450

Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
              SL   G   +  +           L+    PR V   + +D  L       +     
Sbjct: 451 GRESLSSQGSDRIDEAGEWKEATQFFELVRTNVPRKVTESENNDNILLQNTNIHERGQKV 510

Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET-ENRSFNTPDE 400
                         G+   +F   +    + K    S P  D        E    +  ++
Sbjct: 511 KKAATEAMQQQQENGKKVQAFTADHELEEYAKNPKVSKPARDHGGSNGRSEAAKVSHGEK 570

Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
              +++ +   +  ++D+           +R +   Q   TE         +   +  + 
Sbjct: 571 GLAMKVQVAQEVFRVEDE-----------ERFRMNLQSIGTEKRQARANGSQKHENVVEV 619

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY--QELADIRYDNNELQKL 518
              Q  ++         K P  +EA  + ++ N   +++++   +      ++  E +K+
Sbjct: 620 PREQSKIEVRQTAEDKEKGPLPKEA--IRSVENEKQLIRKKDGGERRGRSTFEQEENEKM 677

Query: 519 WSFLFSDFVEQKYFLPE----EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-- 572
                     ++         E  +R+ E    E  ++  R+  +         A +   
Sbjct: 678 LKAPLEQMENERRLKEALKQGEKEKRINEACVREETEKKQREAYEKEEKEKRLRAALEWE 737

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI-------SILHE-V 624
           +  +  ++A    +  R L    EE E+++ + T + E E+    +         L E +
Sbjct: 738 ENERKLKEAFVKEENERRLKEICEEYERRLGEATDREENERRQREVREREENEKRLKEAL 797

Query: 625 HIQIHQIESQE 635
             + ++   +E
Sbjct: 798 EKEENEGRLRE 808


>gi|159462548|ref|XP_001689504.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283492|gb|EDP09242.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 755

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 76/251 (30%), Gaps = 16/251 (6%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
            T D +A+        +   +       +++    RL +  +             K+   
Sbjct: 382 QTRDAQAKKYKEAVRLLKVGRRPGDVEAHARDAESRLSEALRAAEQARVRQLDAQKRADD 441

Query: 456 -HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
             R   G   RL +     G+  +     E           ++   + Q +   R  N  
Sbjct: 442 LARQVSGLESRLEEGDRKLGEARRAVERAEQRADRA---ERSLRDVETQLVDAERRANQA 498

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA----- 569
             + +S      +        ++ +   +     +  ++  +  +A    A   +     
Sbjct: 499 --ESYSATLERRLRDSEGRLTDVDRHAKDADSRAVDAEMRMKATEARALDAEKRSLDCES 556

Query: 570 ----NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
               +   +R+   Q   L  R+R   RQK+E E Q     A  +  K+    + +  + 
Sbjct: 557 RLAVSERRLREAENQVTELTHRWRDCERQKQEAELQARAAEASAKQAKSDKD-TEVMSIT 615

Query: 626 IQIHQIESQEA 636
             +    +QEA
Sbjct: 616 RTMEARRNQEA 626


>gi|156552971|ref|XP_001603525.1| PREDICTED: similar to CG4527-PB [Nasonia vitripennis]
          Length = 1527

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 100/283 (35%), Gaps = 20/283 (7%)

Query: 362  FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +        ++  I     L ++   ++ E + F    ++A+L           ++++ R
Sbjct: 1100 YGDDENGKFYDDQIFRKQELRELKMLQKMEQKQFQDLSQKAQLNKEQLEK----RNEQER 1155

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                +     L  L ++   +        + + R   +K  +++  +    +  L +   
Sbjct: 1156 QMLERTAEADLDALVRQQRQQLDRAEAQQEADLRLASKKIRAEQERELKQFREGLKQDLR 1215

Query: 482  LREAAL-LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            L +  + L+      +  + + ++L      + E +KL+        E        +   
Sbjct: 1216 LLKQEVDLMPKEKRKSAFKVRKEKLEQE---HEEREKLF---LEKLNESHETSLRRLSDS 1269

Query: 541  LCERGF-----GELLKQLDRQVRDAGLWSATTEA--NIVDVRQGYQQALALYKRFRLLSR 593
              E+           KQ   + R+A +W            + +   + +   +R ++L R
Sbjct: 1270 HREKIALMERQFLQQKQQLLRAREAAIWELEERQIHERQQLLKRQLKDIFFLQRHQMLIR 1329

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
             ++E+E Q+ ++  + E E           +  +I  +++++E
Sbjct: 1330 HEKELE-QMKRMNQRKEEELVKRQTIERRNLPKRIRNEMKARE 1371


>gi|114587771|ref|XP_526227.2| PREDICTED: TATA element modulatory factor isoform 3 [Pan
           troglodytes]
          Length = 1093

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 83/261 (31%), Gaps = 33/261 (12%)

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN-ARHRDQKGPSQ 464
              K  I +IK++      S    D L++  ++         +  K+        K    
Sbjct: 522 DAAKKEIKNIKEELATRLNSSETADLLKEKDEQIRGLMEEGEKLSKQQLHNSNIIKKLRA 581

Query: 465 RLMQSSLVKGKLSKKPSLREAAL--LLTLINHPAILQE-QYQEL----ADIRYDNNELQK 517
           +  ++  +  KL+KK    E  L  L  +++    +++   + +    + +     +L  
Sbjct: 582 KDKENENMVAKLNKKVKELEEELQHLKQVLDGKEEVEKQHRENIKKLNSMVECQEKDLGH 641

Query: 518 L---------------------WSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLD 554
           L                     +  L            E     L        EL   L+
Sbjct: 642 LQVDMDELEEKNRSIQAALDSAYKELTDLHKANAAKDSEAQEAALSREMKAKEELSAALE 701

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALAL-YKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           +   +A     T    + D+R   Q+      ++   L  +  E+++++ +   +   E 
Sbjct: 702 KAQEEARQQQETLAIQVGDLRLALQRTEQAGARKEDYLRHEIGELQQRLQEAENR-NQEL 760

Query: 614 TAILISILHEVHIQIHQIESQ 634
           +  + S    +  QI  +++ 
Sbjct: 761 SQSVSSTTRPLLRQIENLQAT 781


>gi|109087706|ref|XP_001088212.1| PREDICTED: plectin-1 isoform 1 [Macaca mulatta]
          Length = 4683

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 83/274 (30%), Gaps = 19/274 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       +RE    +    +  AEL          +  + 
Sbjct: 1849 QELIRLRAETEQGEQQRQLLEEELARLQREAAAATQKRQELEAELAKVRAEMEVLLASKA 1908

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1909 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1968

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------FLFSDFVEQKYFL 533
              L E   L  +     +  E    L +   +N  L++L            +   Q    
Sbjct: 1969 RVLAEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKAD 2026

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             EE   +L +    EL                  E  +   RQ  ++ LAL   F   + 
Sbjct: 2027 IEERLAQLRKASDSEL-----------ERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 2075

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             K E+E ++ ++ +  E    +   + L     +
Sbjct: 2076 GKAELELELGRIRSNAEDTLRSKEQAELEAARQR 2109



 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 55/193 (28%), Gaps = 23/193 (11%)

Query: 457  RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
            R ++     + +      +  ++ +  E  L    +          +        + ELQ
Sbjct: 2294 RQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ-------LEETDHQKNLLDEELQ 2346

Query: 517  KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT--------- 567
            +L +       ++     E    R+      +L  +++ + R   L              
Sbjct: 2347 RLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEA 2406

Query: 568  ----EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
                +      R       A   R      L++Q+   EK + +     +        + 
Sbjct: 2407 EKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAE 2466

Query: 621  LHEVHIQIHQIES 633
            L +   ++ Q ++
Sbjct: 2467 LLQQQKELAQEQA 2479



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 80/226 (35%), Gaps = 14/226 (6%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1465 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1524

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            ++    +  +   ++       +  Q+   I+ +                + +      +
Sbjct: 1525 REAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQXXXXXXXXXXGQARQAEAAERSRL 1584

Query: 538  HQRLCERGFGELLKQLDRQ----VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                  R     L+  +RQ      +     A  E      RQ  ++A  L ++ +  S+
Sbjct: 1585 RIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDESQ 1644

Query: 594  QKEEIEKQIA---QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +K + E ++A   +  A+   EK    +  L E+     +++++EA
Sbjct: 1645 RKRQAEAELALRVKAEAEAAREK-QRALQALEEL-----RLQAEEA 1684



 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1814 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1873

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1874 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1911


>gi|30230642|gb|AAP21063.1| autotransporter/adhesin Aae [Aggregatibacter actinomycetemcomitans
           HK1651]
          Length = 886

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 94/285 (32%), Gaps = 26/285 (9%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +        + +T++++    + +  +    K  +N  + +  R   +Q +  +  ++ 
Sbjct: 31  NAQINNQPSSQAKTKSKTNIKKNMQNNISNSAKESVNTYQTEIQRITAAQKLARQKAEMA 90

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           QK   E     +  +K  + + +    ++     + +  L  K  +RE  +         
Sbjct: 91  QKE-AEARAIAQVKEKRQQSQIKAQELEQKKAELVQREYLEAKRQVREQEMAR---QKAE 146

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR--LCERGFGELLKQLD 554
             ++  + LA ++  N+  Q+L     +   E +    E+   R  +        + +  
Sbjct: 147 EDRKVAEALAAVKLKNSTQQRLTKEQLAAQKEAERLANEQEIARKKIKANELQRAINEQS 206

Query: 555 RQVRDAGLWSATTE----ANIVDVRQGYQQ-ALALYKRFRLLSRQKEE------------ 597
           +    A +     E     +     +  +Q A+   ++   L+  + +            
Sbjct: 207 KLAEVARVKRTLIEQKQVISPQKEDEILRQQAIEEQRKKEALANAERKRLEAERLAREEE 266

Query: 598 IEKQIAQVTAKGEAEKTAILISIL---HEVHIQIHQIESQEAMIE 639
           I  Q A+   K   E        L    E+  Q    E ++  IE
Sbjct: 267 IANQKAEEARKKSEELARRERDRLAREQEIARQKAAEEERQRAIE 311


>gi|118378584|ref|XP_001022467.1| hypothetical protein TTHERM_00991610 [Tetrahymena thermophila]
 gi|89304234|gb|EAS02222.1| hypothetical protein TTHERM_00991610 [Tetrahymena thermophila
           SB210]
          Length = 829

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/279 (9%), Positives = 88/279 (31%), Gaps = 20/279 (7%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI---- 415
               +       +  + +++   D   K+  +  +      ++  E       + I    
Sbjct: 194 HETDKQIEMNIIKDELKDAIIERDYYIKKFRDRLNEKEEYNKSVYESQCNQISSMISILN 253

Query: 416 -KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
            + Q    +Y   I +   Q+ Q          +                 L +   ++ 
Sbjct: 254 QQHQVQIKFYLAHINELENQVIQAKKNISKSALQDLVLQNGSSIFWQEGLELYKQHKIQE 313

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                  ++E  L      H   L +++  +       ++ +K + F+     +Q     
Sbjct: 314 IQKILLDMKEKQL-----RHSQYLTKRFYSIVKTALVIDKYEKKFEFMKQLIEKQPNQSI 368

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           +E    L +       + +  +     + S   +    +  +   Q+L       ++ ++
Sbjct: 369 KEEFNHLQQD------QSIYLKNNSLQVKSFLRKQANDNSLKQLYQSLN---NLDIIQQK 419

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            E+I +++       + E+   L++ + +   +I ++++
Sbjct: 420 NEQIIQKLKTKIQNQDNERV-ELLNEIEQKQKRIIELQN 457


>gi|83319400|ref|YP_424229.1| putative lipoprotein [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283286|gb|ABC01218.1| lipoprotein, putative [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 762

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 77/224 (34%), Gaps = 18/224 (8%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              + ++  +L  +   +   +    K+   ++D+       +Q              +E
Sbjct: 297 LTDLNNKKDELESQINDKQKEFIFKNKETKINQDKLNEINSEIQKVDSSTSNINLKYEKE 356

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                 L     + ++  +    I+    EL+KL   +F    +QK     ++     + 
Sbjct: 357 ------LKKSKELEEQIKKAEQGIKLQEKELEKL---IFDKDQKQKQADGLKVENDSAQT 407

Query: 545 GFGE-------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              E       L  +LD  ++   L +   E    D+   +Q+   L  +  LL  Q   
Sbjct: 408 QIDEWIKANTSLKNKLDEIIQKNKLLNEQKEKLDADISTYFQKKKDLEDKRYLLINQISN 467

Query: 598 IEKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           ++KQI +   K     E+   L +   E   QI  ++ +   +E
Sbjct: 468 LKKQIEEENLKIRKREEQLEELSNKYLEKQNQIRDLKEENKRLE 511


>gi|125972833|ref|YP_001036743.1| ATPase AAA-2 [Clostridium thermocellum ATCC 27405]
 gi|125713058|gb|ABN51550.1| ATPase AAA-2 [Clostridium thermocellum ATCC 27405]
          Length = 803

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 64/175 (36%), Gaps = 23/175 (13%)

Query: 474 GKLSKKPSLREAALLLTLINHPAI---------LQEQYQELADIRYDNNELQKLWSFLFS 524
            K  +K S  E      L++ P++         +++ Y+    ++  +  ++   + + S
Sbjct: 303 RKHIEKDSALERRFQPVLVDEPSVEETIEILRGIKDYYESYHRVKISDEVIRA--AVILS 360

Query: 525 DFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           +      FLP++    L E G         LL+    +     +      A   D  + Y
Sbjct: 361 ERYITDRFLPDKAIDVLDEAGSRANIKNVVLLEYEALKEELKKVQEEKENAVSADSIEDY 420

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL------ISILHEVHIQ 627
           Q+A  L  R   L +Q +E+E++   +    +     I       +  L E+  +
Sbjct: 421 QKAADLKVRECKLLQQIKELEQKSKDMELTVDDIAYVIESWTKIPVQRLTEIEAE 475


>gi|326921296|ref|XP_003206897.1| PREDICTED: ninein-like [Meleagris gallopavo]
          Length = 2022

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 40/356 (11%), Positives = 99/356 (27%), Gaps = 34/356 (9%)

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
                   + L       +      +  +    +     L HL            +  D 
Sbjct: 518 GNSGVEPDQGLGSEDCNPLNMSIEAEMAIEQMKEQHHRDLHHLKQELEDTVNHYEKQLDE 577

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA------------ELEIH 407
                   +    K   E + +++          +    +  A              E +
Sbjct: 578 TKTHYEKEQEDMRKKYSEEMRVMEKQIAGLRSQVAELQGEAAALREQQEKLGCEHNAEKN 637

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
                   +   L+    Q   D ++   ++   + S       +N    ++K  +    
Sbjct: 638 KLQVSFSEEKANLQELLRQEHEDDVRARLEQANEKFSREREELIQNGVWAEEKMRALLQA 697

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
                           E       +    +L++  QEL + R    +++  ++   S   
Sbjct: 698 LQDEKGELEHGFHQKLERMAEAHALEKEGLLRKHRQELEEER---QKMESDYNRRASHAE 754

Query: 528 EQKYFLPEEI-------HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            Q     + +        Q L  R   EL + ++ Q  +   W    +    +V + ++Q
Sbjct: 755 SQFSADTQTLVNKYEETIQSLEGRYQRELREFVELQREEKAQWEFERDEIAQEVAEAHEQ 814

Query: 581 ALALYKRFRL----LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
                   +     LS++KE +EK+          E+   L+    ++  ++ ++ 
Sbjct: 815 LKERLANEKAASVALSQEKELLEKKF--------KEEVNALVCEKEQLQKELQELR 862



 Score = 37.2 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 31/276 (11%), Positives = 89/276 (32%), Gaps = 28/276 (10%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              +R   +      + ++        +   +N  +         E  ++  +  ++D+ 
Sbjct: 651 QELLRQEHEDDVRARLEQANEKFSREREELIQNGVW--------AEEKMRALLQALQDE- 701

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +         +L+++ + +  E  G  R  ++      QK  S    ++S  + + S  
Sbjct: 702 -KGELEHGFHQKLERMAEAHALEKEGLLRKHRQELEEERQKMESDYNRRASHAESQFSAD 760

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                            ++ +  + +  +        + +  L  +   Q  F  +EI Q
Sbjct: 761 TQT--------------LVNKYEETIQSLEGRYQRELREFVELQREEKAQWEFERDEIAQ 806

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            + E    +L ++L  +   +   S   E      ++     +   ++   L ++ +E+ 
Sbjct: 807 EVAEA-HEQLKERLANEKAASVALSQEKELLEKKFKEEVNALVCEKEQ---LQKELQELR 862

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
               +   K  +E   +      E+  +   I + E
Sbjct: 863 DAAEEQERKLSSEMLQLQNDHEKELKDKQELISTVE 898


>gi|297850380|ref|XP_002893071.1| hypothetical protein ARALYDRAFT_335233 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338913|gb|EFH69330.1| hypothetical protein ARALYDRAFT_335233 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 986

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 42/129 (32%), Gaps = 5/129 (3%)

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
           +LA  ++ + E + L          +      E    + +    E  + L     D    
Sbjct: 724 KLAARKFTSEEFEGLK---LEKEKAETNLARCEADLEVTKTKLQETEQLLAEVKSDLESA 780

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILISIL 621
             +       ++   +   +L  R   L  +   ++ +I  +  +  GE E     ++  
Sbjct: 781 QKSNGMAETQLKCMVESYRSLETRSSELEIELTSLKGKIENLEDELHGEKENHREALAKC 840

Query: 622 HEVHIQIHQ 630
            E+  Q+ +
Sbjct: 841 QELEKQLQR 849


>gi|300798535|ref|NP_001178306.1| liprin-alpha-1 [Bos taurus]
 gi|297492266|ref|XP_002699470.1| PREDICTED: PTPRF interacting protein alpha 1-like [Bos taurus]
 gi|296471377|gb|DAA13492.1| PTPRF interacting protein alpha 1-like [Bos taurus]
          Length = 1202

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 84/277 (30%), Gaps = 31/277 (11%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK--- 416
           +   +                 +       + + +    D     +  +K+   + K   
Sbjct: 247 EDLAKVMELQEVIDKQSREQSQMKERLAALSAHVTELEEDLDTARKDLIKSEEVNTKLQR 306

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D +      + + +R+  L ++Y+            N +  ++      + + +  K + 
Sbjct: 307 DVREAMAQKEDMEERITTLEKRYLAAQREATSVHDLNDKLENEIANKDSMHRQTEDKNRQ 366

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            ++        L   +     L E   ELA                 S   E+   + E 
Sbjct: 367 LQERLELAEQKLQQTLRRAETLPEVEAELAQ-----------RVAALSKAEERHGNIEER 415

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + Q          L++ +++++ A       E +   +     + L+       L     
Sbjct: 416 LRQ------MEAQLEEKNQELQRARQREKMNEEHNKRLSDTVDKLLSESNERLQLH---- 465

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +++++A +  K        L+  +  V  Q+ ++++
Sbjct: 466 -LKERMAALEDKNS------LLREVENVKKQLEEMQN 495


>gi|320544542|ref|NP_001188694.1| Muscle-specific protein 300, isoform D [Drosophila melanogaster]
 gi|318068309|gb|ADV36944.1| Muscle-specific protein 300, isoform D [Drosophila melanogaster]
          Length = 12345

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 57/550 (10%), Positives = 146/550 (26%), Gaps = 48/550 (8%)

Query: 88   SVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDER 147
            +++ LA    V +   +   ++ + ++T+ +  ++    +    L+     +       +
Sbjct: 7964 ALELLAERVQVTMETKEKDFKRAKTVRTEYVDGVDEVQRW---LLQAEVQVQERSLTPTQ 8020

Query: 148  GIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLI 207
              +       ++    +    ++ + +    +     E  L+    +   +        +
Sbjct: 8021 MKELLQRINHEITAIYERFTLVKTNGQLIIENCRNSEEKTLVQTTIDQLAASLAQVRGWL 8080

Query: 208  FPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVR 267
               + + G  +    R ++  + V    S +     +   L     A N   K       
Sbjct: 8081 DEKKQAVGDSLDAWTRFMNLYQIVMSWASEKRNFIDQTIELRTLPEARN---KLNDYVTS 8137

Query: 268  RNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPG 327
              S   I+     MD        +  V +         +          ++L  +     
Sbjct: 8138 VKSIKPIVKHLSEMDK---ELEHIGQVTTVGDLKDKLQEAEDAKISVEAVLLERNSLLQE 8194

Query: 328  LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
                +   +      I   R       +G D  S  +            ++L  +++   
Sbjct: 8195 ACEEWDQCERK----IKDIRSWHEKTKQGLD-SSQQQKKPLRDQLGFCEKTLADINVQKT 8249

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            +   +        R  +       ++   D  +R      + + ++   Q      +   
Sbjct: 8250 KLRLSIEKLEVHFRNGMGGD--PRLSENVDDLVR--VLDGLGELVKAKSQSLEQTLAQID 8305

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
             Y ++    R +    ++ ++  +    L   P  RE AL                    
Sbjct: 8306 VYQQQMQSLRQRIIQEEQQLRLVMAPTYL---PHDRERALA-----------------EQ 8345

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
                  EL +L   L S            +   L   G   +   L+   RDA       
Sbjct: 8346 QDLITQELDELLQSLSSVEDGIANMNQSSLDGMLH--GLKLIQSNLEVHERDAIELKNQA 8403

Query: 568  EANIVD------VRQGYQQALALYKRFRLLSRQKEEIE--KQIAQVTAKGEAEKTAILIS 619
            +    D      +     +   L +R +            ++  Q       +    L  
Sbjct: 8404 KKLPTDPATERLLNDTVDRIDLLLRRTQQGITMIANAMHGQKKRQQEIDEYQQHLLELEQ 8463

Query: 620  ILHEVHIQIH 629
             + EV  ++ 
Sbjct: 8464 WIIEVSAELA 8473



 Score = 37.9 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 35/325 (10%), Positives = 96/325 (29%), Gaps = 13/325 (4%)

Query: 320  CFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESL 379
              D      +            L    +         ++   ++         +L   SL
Sbjct: 7116 ILDEIAADYQTLKDESSKRGKSLDDLLQGRKAFEDSMKNMGDWLNEMETATEGELRTTSL 7175

Query: 380  PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI------KDQKLRYYYSQAIRDRLQ 433
            P+++       +    +  + +  L   +      I       D+       + ++DR  
Sbjct: 7176 PVLEEQLAHYKKLL--SDAENKGGLINDVSEQGKSILPTLSNADKLKLNDDIKNMKDRYG 7233

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLSKKPSLREAALLLTLI 492
            ++        +  G + KK    + +     + + +   K  +L++    R   +   L 
Sbjct: 7234 RIKNTIDDRVNALGDHIKKYKDAKSRLAECSQFLGNIQQKLRELNRPIGSRIEDVQDLLG 7293

Query: 493  NHPAILQEQYQ---ELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +  IL+E      ++ D++ D+  ELQ + +         +  L       L    F  
Sbjct: 7294 AYEGILKELKDSKSKMGDMQMDDLPELQSILAQQDDMIKLIEDQLAHLRQLLLLREQFIA 7353

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L+ ++   +          E +   +     +   +  + +           +  ++ ++
Sbjct: 7354 LINEIIAFIMKYTDVIIDIENSPDSLEDKINKYDDVIVKIQECEGVLASANDKGQKIASE 7413

Query: 609  GEAEKTAILISILHEVHIQIHQIES 633
            G A     +   L  +  Q+  +  
Sbjct: 7414 GNAADKNSITEQLQSLKNQLQNLRK 7438


>gi|126282077|ref|XP_001365454.1| PREDICTED: similar to golgin-84 [Monodelphis domestica]
          Length = 730

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 79/212 (37%), Gaps = 8/212 (3%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            +R     ++   E     +  K N     Q+    +   S +++ K     SL+E +  
Sbjct: 396 AERKYMDEKRRAEELQQQVKTSKTNVESLKQELTDYKQKASRILQSKEKLISSLKEGSGF 455

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             L +H A   E      +      E+QKL   +     E +    +++ +        E
Sbjct: 456 EGLDSHTASSMELEDLRHEKEMQREEMQKLMGQIQQLRTELQDMESQQVSEA---ESSRE 512

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTA 607
            L+ L  Q+ +  +     EA +   +Q +      LY+    L  + ++ E +I ++  
Sbjct: 513 RLQDLQEQMAEQKVAKQEVEAELDRQKQEFSYIEEELYRTKNTLQSRIKDREDEIQKLRN 572

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +   +  +       E+  ++HQ+   E +I+
Sbjct: 573 QLTNKTISNSSQ--SELENRLHQL--TETLIQ 600


>gi|109113818|ref|XP_001110924.1| PREDICTED: myosin-XVIIIa-like isoform 5 [Macaca mulatta]
          Length = 2039

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 33/335 (9%), Positives = 93/335 (27%), Gaps = 17/335 (5%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 1461 RRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 1520

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1521 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1580

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E  L   
Sbjct: 1581 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELEGKLATL 1639

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1640 SDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKNQLEESEFTC 1699

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                  R+  +  +     + + +   +   +      +   L R+K EI+ ++ +    
Sbjct: 1700 AAAVKARKAMEVEIEDLHLQIDDIAKAKTVLEE-----QLSRLQREKNEIQNRLEEDQED 1754

Query: 609  GEA---------EKTAILISILHEVHIQIHQIESQ 634
                         + +  ++ ++++  Q+ +   +
Sbjct: 1755 MNELMKKHKAAVAQASRDLAQINDLQAQLEEANKE 1789



 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 98/311 (31%), Gaps = 46/311 (14%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R        +   + L  +++  + E E++     ++       L+  +  + DQ  R  
Sbjct: 1593 RDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREK-----RELEGKLATLSDQVNRRD 1647

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +      RL++  ++     +               K    +L ++ L + + +   +++
Sbjct: 1648 FESE--KRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQL-KNQLEESEFTCAAAVK 1704

Query: 484  EAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY----------- 531
                +   I    + + +  +    +    + LQ+  + + +   E +            
Sbjct: 1705 ARKAMEVEIEDLHLQIDDIAKAKTVLEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKA 1764

Query: 532  ---------FLPEEIHQRLCER-----GFGELLKQLDRQVRDAGLWSATT------EANI 571
                         ++  +L E         E L+ L  QV                EA I
Sbjct: 1765 AVAQASRDLAQINDLQAQLEEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKI 1824

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVH 625
             ++    +      KR   L+ + +E  +++ +           E E+   L   L +  
Sbjct: 1825 RELETRLEFERTQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTK 1884

Query: 626  IQIHQIESQEA 636
             ++ ++  +EA
Sbjct: 1885 EEMGELARKEA 1895


>gi|11994111|dbj|BAB01114.1| CASP protein-like; CCAAT displacement protein-like [Arabidopsis
           thaliana]
          Length = 728

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 53/149 (35%), Gaps = 16/149 (10%)

Query: 494 HPAILQEQYQELADI----RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
             ++L+   +E+ +I    ++  N    ++  L+          P+              
Sbjct: 85  FNSLLKGYQEEVDNITKRAKFGENAFLNIYQKLYEA--------PDPFPALASIAEQDRK 136

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           L +++ + R   +           ++        L +R R L +Q EE  K++ ++  + 
Sbjct: 137 LSEVESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQMEEKIKEVVEIKQRN 196

Query: 610 EAEKTAILISIL----HEVHIQIHQIESQ 634
            AE+    + +L      +  Q+ Q +  
Sbjct: 197 LAEENQKTMELLKDREQALQDQLRQAKDS 225


>gi|332848164|ref|XP_511371.3| PREDICTED: myosin-XVIIIa [Pan troglodytes]
          Length = 1607

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 35/352 (9%), Positives = 96/352 (27%), Gaps = 39/352 (11%)

Query: 323  GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382
             D     +  +A    +   +              D +           +  +   +  +
Sbjct: 1201 QDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELD-EQAGTIQMLEQAKLRLEMEMERM 1259

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
                 +E E+R     + R   +  LK     ++++          +  L+        +
Sbjct: 1260 RQTHSKEMESRDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREKRELEGKLATLSDQ 1319

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI-LQEQ 501
                                     ++ L + + +   +++    +   I    + + + 
Sbjct: 1320 XXXXXXXXNHLKETVLPASERLPSSRNQLEESEFTCAAAVKARKAMEVEIEDLHLQIDDI 1379

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKY--------------------FLPEEIHQRL 541
             +    +    + LQ+  + + +   E +                         ++  +L
Sbjct: 1380 AKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKAAVAQASRDLAQINDLQAQL 1439

Query: 542  CER-----GFGELLKQLDRQVRDAGLWSATT------EANIVDVRQGYQQALALYKRFRL 590
             E         E L+ L  QV                EA I ++    +      KR   
Sbjct: 1440 EEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKIRELETRLEFERTQVKRLES 1499

Query: 591  LSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1500 LASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1551


>gi|326678488|ref|XP_696575.4| PREDICTED: LOW QUALITY PROTEIN: si:dkeyp-192m14.7 [Danio rerio]
          Length = 858

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 9/78 (11%)

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------AQVTAKGEAEKT--AILISIL 621
           I ++    Q+   L +    L +   E E+ I        ++    + E +    L +  
Sbjct: 385 IKELDDISQEIAQLQREKYTLEQDIRETEEAIRHKTTEVQEMQNDLDRETSSLQELEAQK 444

Query: 622 HEVHIQIHQIESQEAMIE 639
            +   ++ +++ Q+A +E
Sbjct: 445 QDAQDRLEEMDQQKAKLE 462



 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 54/149 (36%), Gaps = 12/149 (8%)

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
           + ++   + E+ +L        +EQ     EE  +        E+   LDR+        
Sbjct: 385 IKELDDISQEIAQLQRE--KYTLEQDIRETEEAIRH-KTTEVQEMQNDLDRETSSLQELE 441

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT-----AKGEAEKTAILIS 619
           A  +     + +  QQ   L      + ++ +E  + I+ +       + + +     + 
Sbjct: 442 AQKQDAQDRLEEMDQQKAKLEDMLNDVRQKCQEESQMISSLQTQIHSQESDLQSQEEELG 501

Query: 620 ILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
                   +++++ +EA +E     +GR+
Sbjct: 502 RA---KADLNRLQQEEAQLEQ-SLQAGRI 526


>gi|326428701|gb|EGD74271.1| hypothetical protein PTSG_06280 [Salpingoeca sp. ATCC 50818]
          Length = 1455

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 73/200 (36%), Gaps = 15/200 (7%)

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL----TLINHPAILQEQYQELADI 508
           + R         +L +SS +    +  P +    L+      +     + +E +++ A I
Sbjct: 561 SQRVDSANEKLDKLRESSALSPFGASMPQMESQVLMYNIQRIIAESDRLKKEVFEKSARI 620

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
              N ++ +L       +VE+   + E+ +    +       + L+ +   +      + 
Sbjct: 621 EKQNEKIAELLDR-NQKYVEENNLILEQRNDSFKQTTAQAQARVLELEKERSERMDELS- 678

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK---------GEAEKTAILIS 619
           A    + +  ++   L    + L  + + I+++  + +++         G A K   L  
Sbjct: 679 AATKRLSELQEELQTLKATEQALRAELDSIKEEHDRASSEAASLKAAESGSAVKIEELNR 738

Query: 620 ILHEVHIQIHQIESQEAMIE 639
            L E   Q   I+ + A +E
Sbjct: 739 ALKEERQQNKDIKKRVAALE 758


>gi|306829557|ref|ZP_07462747.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus mitis ATCC 6249]
 gi|304428643|gb|EFM31733.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus mitis ATCC 6249]
          Length = 633

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 58/158 (36%), Gaps = 16/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E + Q +          A+   +    ++  ++A  L ++   L  + EE+E Q  
Sbjct: 532 KAEVE-VSQAEELSTSNQEKEASPFNDYQAQKESQKEARKLMRQIENLEAEIEELETQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQ--IESQE 635
               Q+    +AE+   L + L +++ +     +E +E
Sbjct: 591 AISEQMLETNDAEQLMELQAELEKINHRQEAAMLEWEE 628


>gi|282899440|ref|ZP_06307407.1| Chromosome segregation protein SMC [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195704|gb|EFA70634.1| Chromosome segregation protein SMC [Cylindrospermopsis raciborskii
           CS-505]
          Length = 1193

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/128 (9%), Positives = 38/128 (29%), Gaps = 9/128 (7%)

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             +    +    +  +    +++   L E    +  ++          W    +     V
Sbjct: 783 YAQTRLEILDRELPTQEEQLQQLRHNLAELEASQTPREWQEIQTTIRSWEQQLQQKDNTV 842

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK----GEAE-----KTAILISILHEVH 625
           R+  Q    L  + + L  +  E + ++ +           +     +   L   +  + 
Sbjct: 843 REMEQTLQNLGNQQQRLEEKIREAQMRVGEYEGDQITLTNQQSAVNHQVEELTQEIIHIQ 902

Query: 626 IQIHQIES 633
            ++ +IE 
Sbjct: 903 SRLREIEE 910


>gi|257876872|ref|ZP_05656525.1| ABC transporter [Enterococcus casseliflavus EC20]
 gi|257811038|gb|EEV39858.1| ABC transporter [Enterococcus casseliflavus EC20]
          Length = 1138

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
           + EL+ +   +   Q     +  +  E+     +   Q L +      + +   Q+RD  
Sbjct: 213 FDELSQVASYSEAYQTKRDQVSDEVEERLAPRAQGRRQELIDEA-QPAIDEAKEQIRDGE 271

Query: 562 LWSATTEANIVDVRQGYQQA-LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
                 +A + D  +   QA   L ++      + +  ++Q+      GEA+K A     
Sbjct: 272 EALQQAQAELDDATEKLAQAHQELTEQEAAFQTEIQTAQEQLN-----GEAQKLAEGKQA 326

Query: 621 LHEVHIQIHQIESQEAMIE 639
           L E    +   ++++A+I+
Sbjct: 327 LIENQRLLD--QNEQALIQ 343


>gi|255638749|gb|ACU19679.1| unknown [Glycine max]
          Length = 211

 Score = 41.4 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/124 (10%), Positives = 47/124 (37%), Gaps = 11/124 (8%)

Query: 517 KLWSFLFSDFVEQKYFLPE----EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
           +L  ++  ++ + +    E     +  +L        L+ L +++ ++       +    
Sbjct: 36  QLQKYIQENYSKIRNVERELANLSLEMKLTAGPKKAALEHLRKKIEESTERIRVAKLKEE 95

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             R+ ++ A         + R +E +++++ +  +    E +    + L E+  ++  + 
Sbjct: 96  QARKVWESA-------SKVVRDEEALKQKLCEDLSNLVQESSNSQFARLEELKRRLEALN 148

Query: 633 SQEA 636
              A
Sbjct: 149 PTRA 152


>gi|332867879|ref|XP_003318740.1| PREDICTED: protein CASP isoform 1 [Pan troglodytes]
          Length = 678

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 98/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 101 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 161 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 220

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 221 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 280

Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 281 IQKAPDMEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 340

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 341 QLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 384


>gi|323715518|gb|ADY04829.1| lamin-2xHA tag fusion protein [Gal4/UAS cloning vector pKC26-FB2.0]
          Length = 644

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 77/226 (34%), Gaps = 27/226 (11%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + + L +  ++       +    K   +    +   +  +QS   +     +   +E
Sbjct: 178 RKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQE 237

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWS---FLFSDFVEQKYFLPEEIHQRL 541
                  IN    +++      D R  +    KL      L + + EQ     +EI    
Sbjct: 238 -------INESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLY 290

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-------Q 594
            ++        + R    A   S +T  +I ++R    +  AL      L +       +
Sbjct: 291 EDK--------IQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNAR 342

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIESQEAMIE 639
             ++E+Q+     +   E   +L   L  +  ++  Q++  + +++
Sbjct: 343 IRDLERQLDNDRERHGQE-IDLLEKELIRLREEMTQQLKEYQDLMD 387


>gi|320544546|ref|NP_001188696.1| Muscle-specific protein 300, isoform H [Drosophila melanogaster]
 gi|318068311|gb|ADV36946.1| Muscle-specific protein 300, isoform H [Drosophila melanogaster]
          Length = 11986

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 57/550 (10%), Positives = 146/550 (26%), Gaps = 48/550 (8%)

Query: 88   SVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDER 147
            +++ LA    V +   +   ++ + ++T+ +  ++    +    L+     +       +
Sbjct: 7605 ALELLAERVQVTMETKEKDFKRAKTVRTEYVDGVDEVQRW---LLQAEVQVQERSLTPTQ 7661

Query: 148  GIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLI 207
              +       ++    +    ++ + +    +     E  L+    +   +        +
Sbjct: 7662 MKELLQRINHEITAIYERFTLVKTNGQLIIENCRNSEEKTLVQTTIDQLAASLAQVRGWL 7721

Query: 208  FPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVR 267
               + + G  +    R ++  + V    S +     +   L     A N   K       
Sbjct: 7722 DEKKQAVGDSLDAWTRFMNLYQIVMSWASEKRNFIDQTIELRTLPEARN---KLNDYVTS 7778

Query: 268  RNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPG 327
              S   I+     MD        +  V +         +          ++L  +     
Sbjct: 7779 VKSIKPIVKHLSEMDK---ELEHIGQVTTVGDLKDKLQEAEDAKISVEAVLLERNSLLQE 7835

Query: 328  LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
                +   +      I   R       +G D  S  +            ++L  +++   
Sbjct: 7836 ACEEWDQCERK----IKDIRSWHEKTKQGLD-SSQQQKKPLRDQLGFCEKTLADINVQKT 7890

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            +   +        R  +       ++   D  +R      + + ++   Q      +   
Sbjct: 7891 KLRLSIEKLEVHFRNGMGGD--PRLSENVDDLVR--VLDGLGELVKAKSQSLEQTLAQID 7946

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
             Y ++    R +    ++ ++  +    L   P  RE AL                    
Sbjct: 7947 VYQQQMQSLRQRIIQEEQQLRLVMAPTYL---PHDRERALA-----------------EQ 7986

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
                  EL +L   L S            +   L   G   +   L+   RDA       
Sbjct: 7987 QDLITQELDELLQSLSSVEDGIANMNQSSLDGMLH--GLKLIQSNLEVHERDAIELKNQA 8044

Query: 568  EANIVD------VRQGYQQALALYKRFRLLSRQKEEIE--KQIAQVTAKGEAEKTAILIS 619
            +    D      +     +   L +R +            ++  Q       +    L  
Sbjct: 8045 KKLPTDPATERLLNDTVDRIDLLLRRTQQGITMIANAMHGQKKRQQEIDEYQQHLLELEQ 8104

Query: 620  ILHEVHIQIH 629
             + EV  ++ 
Sbjct: 8105 WIIEVSAELA 8114



 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 35/325 (10%), Positives = 96/325 (29%), Gaps = 13/325 (4%)

Query: 320  CFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESL 379
              D      +            L    +         ++   ++         +L   SL
Sbjct: 6757 ILDEIAADYQTLKDESSKRGKSLDDLLQGRKAFEDSMKNMGDWLNEMETATEGELRTTSL 6816

Query: 380  PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI------KDQKLRYYYSQAIRDRLQ 433
            P+++       +    +  + +  L   +      I       D+       + ++DR  
Sbjct: 6817 PVLEEQLAHYKKLL--SDAENKGGLINDVSEQGKSILPTLSNADKLKLNDDIKNMKDRYG 6874

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLSKKPSLREAALLLTLI 492
            ++        +  G + KK    + +     + + +   K  +L++    R   +   L 
Sbjct: 6875 RIKNTIDDRVNALGDHIKKYKDAKSRLAECSQFLGNIQQKLRELNRPIGSRIEDVQDLLG 6934

Query: 493  NHPAILQEQYQ---ELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +  IL+E      ++ D++ D+  ELQ + +         +  L       L    F  
Sbjct: 6935 AYEGILKELKDSKSKMGDMQMDDLPELQSILAQQDDMIKLIEDQLAHLRQLLLLREQFIA 6994

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L+ ++   +          E +   +     +   +  + +           +  ++ ++
Sbjct: 6995 LINEIIAFIMKYTDVIIDIENSPDSLEDKINKYDDVIVKIQECEGVLASANDKGQKIASE 7054

Query: 609  GEAEKTAILISILHEVHIQIHQIES 633
            G A     +   L  +  Q+  +  
Sbjct: 7055 GNAADKNSITEQLQSLKNQLQNLRK 7079


>gi|293345711|ref|XP_001077739.2| PREDICTED: centromere protein E [Rattus norvegicus]
          Length = 2532

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 70/209 (33%), Gaps = 9/209 (4%)

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
              L  +         +  +  A  R+     ++L +    +    +   + +  L   L 
Sbjct: 1726 AVLQTQNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLN 1785

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE----IHQRLCERGFGE 548
             +   +    +E  D++  +  L++    L     + +    E+        L  +   E
Sbjct: 1786 ENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQE 1845

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSRQKE--EIEKQIAQ 604
             +++L   V       +     +       Q+ +   K    +LL  + E  E +KQ+ +
Sbjct: 1846 TIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKE 1905

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIES 633
                    +   L ++  ++H  + +++S
Sbjct: 1906 QGLALSKIEMENL-NLAQQIHQNLEEMKS 1933


>gi|308803066|ref|XP_003078846.1| kinesin-like protein B (ISS) [Ostreococcus tauri]
 gi|116057299|emb|CAL51726.1| kinesin-like protein B (ISS) [Ostreococcus tauri]
          Length = 2739

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 75/217 (34%), Gaps = 6/217 (2%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +++R   +    DR  QL     T      +  +   +  D+   +    +    K   +
Sbjct: 1907 KQVREELASMEADRRDQLANGSATLQEVQKQAREDMQKAEDRHHEAIAEERRRADKAIAT 1966

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    +  L   +      + +  +++      + EL+K  + L  +  +      E++
Sbjct: 1967 AQ-DKADKKLQTAMSKAEDRVNKANEKVEAAEKHSAELEKSLAKLQKELEKTSNTSSEQV 2025

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                 ++   E  ++L+              +  ++  Q   +      +   L  +KE+
Sbjct: 2026 ANL--QKELDEANEKLEXXXXXXXEERIKEISANLEAEQ--VRLRKAEAKVEKLQTEKEQ 2081

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            + +++    +K E    A L   L  ++ ++  + S+
Sbjct: 2082 LAEKMQDKLSK-ETATVAELQGELKTLNKELKAMLSE 2117



 Score = 38.3 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 85/289 (29%), Gaps = 29/289 (10%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +   +       ++     +     E +        E   +        N  +   +R  
Sbjct: 2074 KLQTEKEQLAEKMQDKLSKETATVAELQGELKTLNKELKAMLSERDALSNEKQSLAIRLA 2133

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL------VKGKLS 477
              ++ + +L +  +    +H       +   +  + +  +    + +L      V+   +
Sbjct: 2134 DLESTQKKLSEEVESVGAKHEKKMGKLETRLKAMEAERDALAGERDALDSKIKAVEQAKA 2193

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPE 535
               S  EAAL            +  Q+LA+      E++     L    + V        
Sbjct: 2194 DIESRAEAAL--------KEKADMEQQLAEFETAKQEMEAAQERLKASEEAVNGHEARIA 2245

Query: 536  EIHQRLCERG-----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             +  +L           + LK+     +       T +  +   R      L   K    
Sbjct: 2246 GVVAQLESEQKEVERLEKQLKESTSVHKTTLESLTTAQKALERERTELLSELNALKEADS 2305

Query: 591  LSR------QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            L +      Q + +E ++  +    E +    ++    E+ +Q+ + ++
Sbjct: 2306 LRKNKEGNEQNKALEARL--LEQTREVDNARRILKESEELRLQLEERQA 2352


>gi|114556836|ref|XP_001156392.1| PREDICTED: hook homolog 1 isoform 1 [Pan troglodytes]
 gi|332809137|ref|XP_003308178.1| PREDICTED: protein Hook homolog 1 [Pan troglodytes]
          Length = 686

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 104/304 (34%), Gaps = 25/304 (8%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D             + ++  + 
Sbjct: 227 DDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQ 286

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      +R +++ L +  +          ++  +    +   +   +            
Sbjct: 287 KLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSE 346

Query: 481 SLREAALLLTLIN----HPAILQEQYQELAD---IRYDNNELQ--KLWSFLFSDFVEQKY 531
           S R   L   +      H A+L+E+ + +     ++  N EL+  ++     +       
Sbjct: 347 SKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTDASAT 406

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALA------- 583
              E +   +    + E+  +L  + +   L    +E   I ++++  +Q          
Sbjct: 407 KSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELET 466

Query: 584 ----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQE 635
                 +R R L +Q E+++K + +  +K E E ++ L   L     ++     +++ ++
Sbjct: 467 EQRLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQ 526

Query: 636 AMIE 639
            +IE
Sbjct: 527 ELIE 530


>gi|7248896|gb|AAF43712.1|AF237959_1 M protein precursor [Streptococcus sp. 'group G']
          Length = 238

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 71/189 (37%), Gaps = 17/189 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL----ADIRYDNNELQKLWS 520
           +         +L +    +E  LL  L +H  + +E+ +EL    + + + N ++ KL +
Sbjct: 42  KYTNELKKSTELEEAYKAQEETLLGILRDHSNLFKEKQKELNDISSQLEFKNAQIAKLVN 101

Query: 521 FL--FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT--TEANIVDVRQ 576
                 + +E      ++  + +  +    +  QL  + ++A + +          ++ +
Sbjct: 102 DNDGLKEAIEGYVDTIQQASREVSAKQEELVAAQLQLEAKNAEIENLKLQDNMKAEEIAK 161

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI---------SILHEVHIQ 627
              +A  L        R+  ++E ++A   A+    ++  +I           + ++  +
Sbjct: 162 LESEAKILENLIGSGKRELGDLEAKLADANAQKAKLESEAVILENLIGSGKREIADLQAK 221

Query: 628 IHQIESQEA 636
           +    +  A
Sbjct: 222 LDAANADNA 230


>gi|3986194|dbj|BAA34954.1| myosin heavy chain [Dugesia japonica]
          Length = 1958

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 83/237 (35%), Gaps = 24/237 (10%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + ++ ++Q   ++   +        +K  + +  K    + +Q  + + +       +E
Sbjct: 929  LEEMKKKMQGEIEELKKDVVDLESSLQKAEQEKTAKDQQIKALQDQIARQEEEMNKMKKE 988

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY---------FLPE 535
                        + ++  + L         L K  + L     E +             E
Sbjct: 989  KKAA------DELQKKTEESLQAEEEKVKNLNKAKAKLEQTIDEMEENLSREQKVRADVE 1042

Query: 536  EIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            ++ +++        E +  L+R  R+        E  + +     +    L  +   L +
Sbjct: 1043 KVKRKIETELKQTQETVDDLERVKRELEEQLKRKEMELSNASSKIEDESGLVAQ---LQK 1099

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISI--LHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            + +E++ +I ++    EAE+ A   +    H++  ++ ++   + + E  G  S +L
Sbjct: 1100 KIKELQARIQELEEDLEAERQARAKAEKSRHQLEGELEEL--SDRLEEQGGATSAQL 1154



 Score = 37.6 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 28/258 (10%), Positives = 77/258 (29%), Gaps = 13/258 (5%)

Query: 391  ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA---IRDRLQQLFQKYITEHSGYG 447
                        + +  ++     ++D+K +    +    + +R   +    + E     
Sbjct: 1626 NRFRSEAEKNAKKFQQQVQELQAMVEDEKHQKDQIREQTMMNERKMAMILGELEEVRSSL 1685

Query: 448  RYWKKNARHRDQKGP--SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
               ++N ++ + +    + RL + S+            EA L     +      E  Q  
Sbjct: 1686 ENSERNRKNTESEKVELTDRLNELSVQSSSFMATKRKLEADLAAMQSDLEEASNEARQAN 1745

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD-----A 560
               +    +  +L+  +  +    +     +       +     L + +           
Sbjct: 1746 EQAKKAVADSSRLFDEIRQEQEHAQQLDKIKKQLEAQNKELQVKLDESENNAMKGGKKVL 1805

Query: 561  GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            G           ++    ++ +   K  R + R+ +EI   +     K   E+   L+  
Sbjct: 1806 GKLEQRVRELEAELDAEQKRHVETQKNTRKIERRLKEIG--LQTDEDKKNQERLQDLVEK 1863

Query: 621  LH-EVHIQIHQIESQEAM 637
            L  ++     Q+E  E +
Sbjct: 1864 LQGKIKTYKRQVEEAEEI 1881


>gi|321400112|ref|NP_001189473.1| protein CASP isoform e [Homo sapiens]
          Length = 662

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 98/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 85  DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 144

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 145 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 204

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 205 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 264

Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 265 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 324

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 325 QLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 368


>gi|320544548|ref|NP_001188697.1| Muscle-specific protein 300, isoform I [Drosophila melanogaster]
 gi|318068312|gb|ADV36947.1| Muscle-specific protein 300, isoform I [Drosophila melanogaster]
          Length = 11999

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 57/550 (10%), Positives = 146/550 (26%), Gaps = 48/550 (8%)

Query: 88   SVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDER 147
            +++ LA    V +   +   ++ + ++T+ +  ++    +    L+     +       +
Sbjct: 7605 ALELLAERVQVTMETKEKDFKRAKTVRTEYVDGVDEVQRW---LLQAEVQVQERSLTPTQ 7661

Query: 148  GIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLI 207
              +       ++    +    ++ + +    +     E  L+    +   +        +
Sbjct: 7662 MKELLQRINHEITAIYERFTLVKTNGQLIIENCRNSEEKTLVQTTIDQLAASLAQVRGWL 7721

Query: 208  FPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVR 267
               + + G  +    R ++  + V    S +     +   L     A N   K       
Sbjct: 7722 DEKKQAVGDSLDAWTRFMNLYQIVMSWASEKRNFIDQTIELRTLPEARN---KLNDYVTS 7778

Query: 268  RNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPG 327
              S   I+     MD        +  V +         +          ++L  +     
Sbjct: 7779 VKSIKPIVKHLSEMDK---ELEHIGQVTTVGDLKDKLQEAEDAKISVEAVLLERNSLLQE 7835

Query: 328  LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
                +   +      I   R       +G D  S  +            ++L  +++   
Sbjct: 7836 ACEEWDQCERK----IKDIRSWHEKTKQGLD-SSQQQKKPLRDQLGFCEKTLADINVQKT 7890

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            +   +        R  +       ++   D  +R      + + ++   Q      +   
Sbjct: 7891 KLRLSIEKLEVHFRNGMGGD--PRLSENVDDLVR--VLDGLGELVKAKSQSLEQTLAQID 7946

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
             Y ++    R +    ++ ++  +    L   P  RE AL                    
Sbjct: 7947 VYQQQMQSLRQRIIQEEQQLRLVMAPTYL---PHDRERALA-----------------EQ 7986

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
                  EL +L   L S            +   L   G   +   L+   RDA       
Sbjct: 7987 QDLITQELDELLQSLSSVEDGIANMNQSSLDGMLH--GLKLIQSNLEVHERDAIELKNQA 8044

Query: 568  EANIVD------VRQGYQQALALYKRFRLLSRQKEEIE--KQIAQVTAKGEAEKTAILIS 619
            +    D      +     +   L +R +            ++  Q       +    L  
Sbjct: 8045 KKLPTDPATERLLNDTVDRIDLLLRRTQQGITMIANAMHGQKKRQQEIDEYQQHLLELEQ 8104

Query: 620  ILHEVHIQIH 629
             + EV  ++ 
Sbjct: 8105 WIIEVSAELA 8114



 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 35/325 (10%), Positives = 96/325 (29%), Gaps = 13/325 (4%)

Query: 320  CFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESL 379
              D      +            L    +         ++   ++         +L   SL
Sbjct: 6757 ILDEIAADYQTLKDESSKRGKSLDDLLQGRKAFEDSMKNMGDWLNEMETATEGELRTTSL 6816

Query: 380  PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI------KDQKLRYYYSQAIRDRLQ 433
            P+++       +    +  + +  L   +      I       D+       + ++DR  
Sbjct: 6817 PVLEEQLAHYKKLL--SDAENKGGLINDVSEQGKSILPTLSNADKLKLNDDIKNMKDRYG 6874

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLSKKPSLREAALLLTLI 492
            ++        +  G + KK    + +     + + +   K  +L++    R   +   L 
Sbjct: 6875 RIKNTIDDRVNALGDHIKKYKDAKSRLAECSQFLGNIQQKLRELNRPIGSRIEDVQDLLG 6934

Query: 493  NHPAILQEQYQ---ELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +  IL+E      ++ D++ D+  ELQ + +         +  L       L    F  
Sbjct: 6935 AYEGILKELKDSKSKMGDMQMDDLPELQSILAQQDDMIKLIEDQLAHLRQLLLLREQFIA 6994

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L+ ++   +          E +   +     +   +  + +           +  ++ ++
Sbjct: 6995 LINEIIAFIMKYTDVIIDIENSPDSLEDKINKYDDVIVKIQECEGVLASANDKGQKIASE 7054

Query: 609  GEAEKTAILISILHEVHIQIHQIES 633
            G A     +   L  +  Q+  +  
Sbjct: 7055 GNAADKNSITEQLQSLKNQLQNLRK 7079


>gi|309811766|ref|ZP_07705540.1| excinuclease ABC, B subunit [Dermacoccus sp. Ellin185]
 gi|308434187|gb|EFP58045.1| excinuclease ABC, B subunit [Dermacoccus sp. Ellin185]
          Length = 701

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 41/124 (33%), Gaps = 8/124 (6%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCE------RGFGELLKQLDRQVRDAGLWSATTEANIV 572
              L   +  +K   P+ + +++ +      R   +    L      +            
Sbjct: 578 RRELQIAYNTEKGIDPQPLRKKIADITDMLQRESADTDALLGSGRSMSRGKGRGGSGAAS 637

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
                   A         L+   +E++ Q+++  ++ + E  A L   L ++  ++ Q+ 
Sbjct: 638 ADANVAAGAKREASSAADLAGLIQELQAQMSEAASELQFELAARLRDELRDLKKELRQM- 696

Query: 633 SQEA 636
             EA
Sbjct: 697 -TEA 699


>gi|193783738|dbj|BAG53720.1| unnamed protein product [Homo sapiens]
          Length = 606

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 82/282 (29%), Gaps = 27/282 (9%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             R       E+    S    ++  +R+  +R              +    + I+    +
Sbjct: 157 TARQEHTELMEQYKGISRSHGEITEERDILSRQQGDH------VARILELEDDIQTISEK 210

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               +   DRL+   +    E        K+    ++Q       ++  L   +     S
Sbjct: 211 VLTKEVELDRLRDTVKALTREQEKLLGQLKEVQADKEQSEAELEPLKEQLRGAQELAASS 270

Query: 482 LREAALL------LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            ++A LL              I + +   L      N  L +L   L  +   Q      
Sbjct: 271 QQKATLLGEELASAAAARDRTIAELRRSRLEVAE-VNGRLAELGLHLKEE-KCQWSKERA 328

Query: 536 EIHQRLCERG-----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            + Q +             + +L++ V++    +   +  +   +           +   
Sbjct: 329 GLLQSVEAEKDKILKLSAEILRLEKAVQEERTQNQVFKTELAREKDS------SLVQLSE 382

Query: 591 LSRQKEEIEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQ 630
             R+  E+   +   Q   +   E+   L+  + ++  ++ +
Sbjct: 383 SKRELTELRSALRVLQKEKEQLQEEKQELLEYMRKLEARLEK 424


>gi|187956263|gb|AAI50740.1| Myosin, heavy polypeptide 1, skeletal muscle, adult [Mus musculus]
          Length = 1942

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1568 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQSTLDAEIRSRNDAIRLKKKMEG 1627

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1628 DLNEM-EIQLNHSNRMAAEALRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAM 1680

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1681 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1740

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1741 ISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1800

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1801 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1832


>gi|170066036|ref|XP_001868103.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167862709|gb|EDS26092.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 573

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 16/111 (14%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG---------YQQALALY 585
           EE    +  +    + ++L  + +            + D R            Q    L 
Sbjct: 324 EEWRNSMQRKDLDPIPEELSEETKKNEQNLLVLLQQLEDQRAEDQQLQRQREEQLKRKLQ 383

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-------ILISILHEVHIQIH 629
           ++ R  S+QK+E+++++ QV A+ + E           L     E+  ++ 
Sbjct: 384 QQEREQSKQKQELQRRLQQVEAEQKEEMQRLLQQQQRELAEQKRELKQRLR 434


>gi|158259615|dbj|BAF85766.1| unnamed protein product [Homo sapiens]
          Length = 731

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 78/269 (28%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK----LRYYYSQAIRDRLQ 433
           +      + K   +            LE         ++DQ     L+    Q +++RL 
Sbjct: 296 AKDSQLAVLKARLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTLQERLH 355

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 356 EADATLKREQESYKQMQSEFA---------ARLNKVEMERQNLAEAITLAER-------K 399

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    +   +    ++     L+     L     +        E++   L E    E L 
Sbjct: 400 YSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLD 459

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 460 SSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHD 519

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   IE
Sbjct: 520 QIAGQKASK--QELETELERLKQEFHYIE 546


>gi|146319813|ref|YP_001199525.1| replicative DNA helicase [Streptococcus suis 05ZYH33]
 gi|145690619|gb|ABP91125.1| Replicative DNA helicase [Streptococcus suis 05ZYH33]
          Length = 162

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 7/155 (4%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            L + ++  +  L E ++L  +      L    + +    +  +  + ++  + +     
Sbjct: 3   ELDELRVQPQDILAEQSVLGAIFLDEGKLVFVREYIEAEDFFKHAHKLIFKAMIALSDRN 62

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +      +   L   G       L+     A L    +        + Y + +A     R
Sbjct: 63  EAIDATTMRNYLVNHG------DLENIGGLAYLAEIISSVPTAANAEFYAKIVAEKSNLR 116

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            L  +  +   Q  + T  G  +  A     L +V
Sbjct: 117 KLIARLTDAVNQAYEGT-DGSDDIIANAEKALIDV 150


>gi|118385548|ref|XP_001025903.1| PH domain containing protein [Tetrahymena thermophila]
 gi|89307670|gb|EAS05658.1| PH domain containing protein [Tetrahymena thermophila SB210]
          Length = 1022

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 543 ERGFGELLKQ---LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           E  F +L K+   L+++           +  + +V +   Q     ++ + L ++ E+++
Sbjct: 385 EAQFDDLTKEYDILEQKYTIKEQTEKENQKALENVSKLETQCAQYSRKQKELEQKNEQLK 444

Query: 600 KQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEAM 637
            + A +  + +            L ++  Q+ Q ++ +A+
Sbjct: 445 LENADLKQESDKMYGLFQQAQEELDQIKQQLSQNQTTQAL 484


>gi|82524274|ref|NP_109604.1| myosin-1 [Mus musculus]
 gi|73921191|sp|Q5SX40|MYH1_MOUSE RecName: Full=Myosin-1; AltName: Full=Myosin heavy chain 1; AltName:
            Full=Myosin heavy chain 2x; Short=MyHC-2x; AltName:
            Full=Myosin heavy chain, skeletal muscle, adult 1
 gi|56206251|emb|CAI24987.1| myosin, heavy polypeptide 1, skeletal muscle, adult [Mus musculus]
 gi|80474369|gb|AAI08330.1| Myosin, heavy polypeptide 1, skeletal muscle, adult [Mus musculus]
          Length = 1942

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1568 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQSTLDAEIRSRNDAIRLKKKMEG 1627

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1628 DLNEM-EIQLNHSNRMAAEALRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAM 1680

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1681 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1740

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1741 ISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1800

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1801 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1832


>gi|116203627|ref|XP_001227624.1| hypothetical protein CHGG_09697 [Chaetomium globosum CBS 148.51]
 gi|88175825|gb|EAQ83293.1| hypothetical protein CHGG_09697 [Chaetomium globosum CBS 148.51]
          Length = 1690

 Score = 41.4 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 26/251 (10%), Positives = 76/251 (30%), Gaps = 25/251 (9%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            ++  S  + ++ +  E          ++ + R    + +  R++ L ++     +   + 
Sbjct: 911  SKLASGTSREQVSRFEADRDELEQAFQEFQERQ---RELEARIRSLKEQIPELDTKMQKI 967

Query: 450  W----KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
                     +  D +   + L +          +    E  +         + ++  +  
Sbjct: 968  NLEVESSARKLADAQRRIKELAKEHQPSKTDDSRIVTLEKEIAK-------LNRDIERLH 1020

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
             +      E++ L   +     E+       +          E +   + +V  A +  A
Sbjct: 1021 GETSSVEEEIKALQDKIMEIGGEKLRAQRATV------DALKEEITSQNEEVSSAEVRKA 1074

Query: 566  TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHE 623
              E  I  +R   +      K      R  E++E +I     K E    +       L  
Sbjct: 1075 KAEKQITKLR---KDHTKASKELEAAIRDSEKLEAEIQNQGDKAEDYKTRVEEAKEALAA 1131

Query: 624  VHIQIHQIESQ 634
               ++ +++++
Sbjct: 1132 KKQELAEMKAE 1142


>gi|326478159|gb|EGE02169.1| dynactin [Trichophyton equinum CBS 127.97]
          Length = 1351

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 26/248 (10%), Positives = 71/248 (28%), Gaps = 33/248 (13%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              ++ +L+ + +K   +           A     +   Q+L +    + +       + 
Sbjct: 306 LDDLKTKLKIMEKKRAEDREKLKMVETYRAERDKFETIIQKLREKYQPQQQEITTLRKQL 365

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                 +     +  E    L     D    +++   + +++   K    E   +    +
Sbjct: 366 KEAEYRVEEVERLQAEHESILEMAALDREMAEEVAESIKAEYEALKIRTEELELEVEVLK 425

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY--------QQALALYKRFRLLSRQKE 596
              + L Q+      +       E     +R+          QQ   L  + + L  + +
Sbjct: 426 EENDQLGQVMSPEEKSSQGWLQMERTNERLREALIRLRDMTQQQEADLKDQVKELEEELK 485

Query: 597 E------------------------IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ-I 631
           +                        +++Q+  + A+   E+         E   ++   I
Sbjct: 486 DYNNLKAQYESTKEKLLASEANMEDLKQQVEALGAEEMIEELTEKNMQYQEEVNELKAII 545

Query: 632 ESQEAMIE 639
           E  E++ E
Sbjct: 546 EDLESLKE 553


>gi|270011484|gb|EFA07932.1| hypothetical protein TcasGA2_TC005513 [Tribolium castaneum]
          Length = 1908

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 91/270 (33%), Gaps = 16/270 (5%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
              EK+  ++           +E+ +     E+  LE    +    + +++ +  +   ++
Sbjct: 949  QLEKVQCDAKIKKLEEDLALSEDTNQKLLKEKKVLEERSNDLSQALAEEEEKAKHLAKLK 1008

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             + +    +         +  +++ R + +       ++  L + K     S  E   L 
Sbjct: 1009 AKHEATIAELEERLLKDHQQRQESDRTKRKVETEVNDLKEQLAEKK-----SQLEELQLQ 1063

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                   + Q   +   +        + L   + S   E +  L  E   R         
Sbjct: 1064 LGKREEELAQAMVRVDEEGALKAQAQKALRE-MESQLSELQEDLEAEKAARSKAEKLKRD 1122

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            L +    +++  L S  T A   ++R   +Q LA  K+   L  + +  E  +A +  K 
Sbjct: 1123 LNEELEALKNELLDSLDTTAAQQELRSKREQELANLKKN--LEEENQVHEATLADMRHKH 1180

Query: 610  EAEKTAILISILHEVHIQIHQIESQEAMIE 639
                       L  ++ Q+  I+ Q+A IE
Sbjct: 1181 --------TQELASLNEQLENIKKQKASIE 1202


>gi|255321374|ref|ZP_05362534.1| ATP-dependent protease La [Campylobacter showae RM3277]
 gi|255301527|gb|EET80784.1| ATP-dependent protease La [Campylobacter showae RM3277]
          Length = 808

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 75/232 (32%), Gaps = 26/232 (11%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +++ +R + S      +  + ++           ++  ++ R     S + +Q+ +    
Sbjct: 60  QNEGVREFDSIYDAGVIGTVMRRVPLPDGRVKILFQGTSKGRIVSKVSSKPLQAIVDVLH 119

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF------LFSDFVEQ 529
             +  + +  ALL  L       ++     A   +   +L K          +    +  
Sbjct: 120 EKRPENTKSDALLTVL------REKVRDLAALSHFFPPDLLKTIEESAEPSRVCDLILSS 173

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                +  ++   E    + L +L   V    +          +++      +    +  
Sbjct: 174 LRLKKKTAYEFFIEENLEQKLLKLIDYV----IEEIEANKLQREIKNKVHSRIDKVNKEY 229

Query: 590 LLSRQKEEIEKQI-AQVTAKGEAEKTAILISI---------LHEVHIQIHQI 631
            L  Q ++I++++ +  + + E E+    +             E+  QI ++
Sbjct: 230 FLKEQLKQIQQELGSDTSREEEIEEYRKKLEAKKKFMGEDAYKEIKKQIDKL 281


>gi|225677331|ref|ZP_03788307.1| replicative DNA helicase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590632|gb|EEH11883.1| replicative DNA helicase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 483

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 53/186 (28%), Gaps = 16/186 (8%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           +S   +          E  L+  +I    I       +    + +   Q +++ +     
Sbjct: 11  RSVDKEICKLPHNLEAEQMLIGAMIRDNRICDAVEDTITAENFYDPLHQSIFTQISKTRK 70

Query: 528 EQKYFLPEEIHQRLCER------GFGELLKQLDRQVRDAGLWSATTEANIV--------D 573
                    +             G  E L +L  +   A    + T              
Sbjct: 71  HGIIANELSLKMFFENDQAFTECGGVEYLAKLAAKASIALDIYSLTRIIRDTYLRRCLIK 130

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-TAILISILHEVHIQIHQIE 632
           + Q        Y        Q E+   ++  +  K + EK    L S + +V  +I  ++
Sbjct: 131 LGQEIVGDSYNYDIENPAQAQIEQAMTKLFNLAVKKQGEKTYIKLASSIKDVVEKISTLK 190

Query: 633 SQ-EAM 637
           +  EA+
Sbjct: 191 NNPEAL 196


>gi|270001540|gb|EEZ97987.1| hypothetical protein TcasGA2_TC000382 [Tribolium castaneum]
          Length = 1274

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 104/330 (31%), Gaps = 29/330 (8%)

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            V+C D D+  L   +      L  L    +            ++         FE+  V 
Sbjct: 840  VICPDEDNYNLADLHNDRKQELRELKYLQKQEQKQFQDLAFKENLTLEQQDKKFEQERVN 899

Query: 378  SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
                 +   +  +  +        A  +  L+     I+ ++ R    +  RD L+Q  +
Sbjct: 900  LERTYENDLEMLSRQQRMQIEKAEAHQDAELRAMSKKIRGEQERE--LKIFRDGLKQELR 957

Query: 438  KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA- 496
                E     +  +K               +  L K K+      RE A L  L  +   
Sbjct: 958  LLKAEIDLLPKERRK--------------AEFKLRKEKMDADHLEREKAFLEKLNENHES 1003

Query: 497  ----ILQEQYQELADIRYDN----NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-- 546
                +     +++A +         +L +       +  E++     ++ +R  +  F  
Sbjct: 1004 SLRRLSDSHREKIALMERQFLQQKQQLTRTREAALWEIEERQIHEKHQLMKRQIKEIFIL 1063

Query: 547  --GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               ++L + +++       +A  E  ++  +   +++L    R  + +R+    E     
Sbjct: 1064 QRHQMLTRHEKEKEQIKRRAARKEEELLKKQAAEKRSLPKRIRTEMKARELMFRESMRIS 1123

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++   + E          E   + +Q E Q
Sbjct: 1124 ISGTNDPEAEKNKFKEFQEKEKKRYQAEQQ 1153


>gi|156405274|ref|XP_001640657.1| predicted protein [Nematostella vectensis]
 gi|156227792|gb|EDO48594.1| predicted protein [Nematostella vectensis]
          Length = 974

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/211 (9%), Positives = 68/211 (32%), Gaps = 22/211 (10%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           +         E         K  + + +   +   + +   K       S          
Sbjct: 189 IGVAVNSGHPEFEYVLESMSKPKKRQAEPSTASEAISNKQRKVLSESDRSNVHRETPSC- 247

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
            +H   ++   Q++  +  +  E +K++  +  +   ++  +  E+ +   +       +
Sbjct: 248 -SHDEKIKAAEQKIKILNNNLEEKEKVYEKVLEELKRKESVMESELLR--QKASLENEKE 304

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK--EEIEKQIAQVTAKG 609
            L+R +++        E +  +  +   + L   K   +  + K  E+++ ++ Q     
Sbjct: 305 DLERSLKELL------EKSPKEKEEMLSEELETQKELLIKEKHKVEEKLQNELNQKLELK 358

Query: 610 EAEKTAILISILHEV----------HIQIHQ 630
           + E    L++   ++            ++ Q
Sbjct: 359 DKELEEKLLAQKADLEKVIAEKEAQQKELQQ 389


>gi|149052965|gb|EDM04782.1| rCG34382, isoform CRA_a [Rattus norvegicus]
          Length = 1940

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 70/214 (32%), Gaps = 11/214 (5%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             ++ +++    +   + S   R   +  +H        +  Q  L    L  +  L+E  
Sbjct: 1614 RLKKKMEGDLNEIEIQLSHANRQAAETIKHLRSVQGQLKDTQLHLDDA-LRGQEDLKEQ- 1671

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERG 545
             L  +     +LQ + +EL          +KL    L       +    +       ++ 
Sbjct: 1672 -LAIVERRANLLQAEVEELRATLEQTERARKLAEQELLDSNERVQLLHTQNTSLIHTKKK 1730

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQ 601
                L QL  +V DA   +   E                 K+ +     L R K+ +E+ 
Sbjct: 1731 LETDLTQLQSEVEDASRDARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQT 1790

Query: 602  IAQVTAKGEAEKTAIL---ISILHEVHIQIHQIE 632
            +  +  + +  +   L      + ++  +I ++E
Sbjct: 1791 VKDLQHRLDEAEQLALKGGKKQIQKLETRIRELE 1824


>gi|126303995|ref|XP_001381654.1| PREDICTED: similar to Rho-associated kinase [Monodelphis domestica]
          Length = 1380

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 102/289 (35%), Gaps = 28/289 (9%)

Query: 362  FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                  K     L+   + L     +   E +  +   +  + ++  +   + +   ++R
Sbjct: 814  MSEKQMKQENNHLMEIKMSLEKQNIELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 873

Query: 422  YYYSQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLS 477
                +  +++  L +  Q+   E                 K  S++L +S   +    L 
Sbjct: 874  EL-KEECQEKTKLCKEMQQKNQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLE 932

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            K+  ++E  +   +  H   L E+   +A +       + L S + +   E++    +  
Sbjct: 933  KEKIMKELEIKEMMARHKQELVEKDATIASLE---EANRTLTSDVANLANEKEELNNKV- 988

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY----------KR 587
                  +   E + +L  +  +  +  +  E  +++ R    QA+             KR
Sbjct: 989  ------KEVQEQISRLKDEETNISVIKSQFEKQLLNERTLKTQAVNKLAEIMNRKEPPKR 1042

Query: 588  FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                  +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1043 GADTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1088


>gi|18606388|gb|AAH23021.1| Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens]
          Length = 731

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 78/269 (28%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK----LRYYYSQAIRDRLQ 433
           +      + K   +            LE         ++DQ     L+    Q +++RL 
Sbjct: 296 AKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTLQERLH 355

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 356 EADATLKREQESYKQMQSEFA---------ARLNKVEMERQNLAEAITLAER-------K 399

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    +   +    ++     L+     L     +        E++   L E    E L 
Sbjct: 400 YSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLD 459

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 460 SSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHD 519

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   IE
Sbjct: 520 QIAGQKASK--QELETELERLKQEFHYIE 546


>gi|6981234|ref|NP_036736.1| myosin-3 [Rattus norvegicus]
 gi|127755|sp|P12847|MYH3_RAT RecName: Full=Myosin-3; AltName: Full=Myosin heavy chain 3; AltName:
            Full=Myosin heavy chain, fast skeletal muscle, embryonic
 gi|1619328|emb|CAA27817.1| myosin heavy chain [Rattus norvegicus]
          Length = 1940

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 70/214 (32%), Gaps = 11/214 (5%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             ++ +++    +   + S   R   +  +H        +  Q  L    L  +  L+E  
Sbjct: 1614 RLKKKMEGDLNEIEIQLSHANRQAAETIKHLRSVQGQLKDTQLHLDDA-LRGQEDLKEQ- 1671

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERG 545
             L  +     +LQ + +EL          +KL    L       +    +       ++ 
Sbjct: 1672 -LAIVERRANLLQAEVEELRATLEQTERARKLAEQELLDSNERVQLLHTQNTSLIHTKKK 1730

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQ 601
                L QL  +V DA   +   E                 K+ +     L R K+ +E+ 
Sbjct: 1731 LETDLTQLQSEVEDASRDARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQT 1790

Query: 602  IAQVTAKGEAEKTAIL---ISILHEVHIQIHQIE 632
            +  +  + +  +   L      + ++  +I ++E
Sbjct: 1791 VKDLQHRLDEAEQLALKGGKKQIQKLETRIRELE 1824


>gi|332283430|ref|YP_004415341.1| hypothetical protein PT7_0177 [Pusillimonas sp. T7-7]
 gi|330427383|gb|AEC18717.1| hypothetical protein PT7_0177 [Pusillimonas sp. T7-7]
          Length = 189

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           + A    +R   L+RQ  E+++++ +   + + +    L + L  +  ++ +   + A
Sbjct: 126 RDAYDAQQRVDRLNRQSRELQRELDE---EKDKDVRQRLRNELRNLDRRLSRARDELA 180


>gi|312212738|emb|CBX92821.1| hypothetical protein [Leptosphaeria maculans]
          Length = 561

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 5/124 (4%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           +     L     E+     E++   L       +L+  + ++    L          + +
Sbjct: 68  RDFNEKLDQAAAERAKHHAEQLA--LAAEEHNRVLRSAELEIERLALEQEQANIRREEAQ 125

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +   + L   K        +  +E +  +  A     +       L E   +I   + QE
Sbjct: 126 KREIERLREEKAREEAEAHRRALEAKQREEQAAR---QAIEHQRKLQETEARIKAQKEQE 182

Query: 636 AMIE 639
           A  E
Sbjct: 183 AAAE 186


>gi|332653476|ref|ZP_08419221.1| DNA mismatch repair protein MutS [Ruminococcaceae bacterium D16]
 gi|332518622|gb|EGJ48225.1| DNA mismatch repair protein MutS [Ruminococcaceae bacterium D16]
          Length = 789

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 46/108 (42%), Gaps = 2/108 (1%)

Query: 530 KYFLPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
             ++ E+   RL      F ++L +LD+Q ++     A  +   +++ Q   +A    ++
Sbjct: 497 PEYIIEKAAARLDAENVRFEDVLTRLDQQRQEMEAERAEAKRLKLEMEQSASKAREYREK 556

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                 +  E  +  A+   +     + + ++ L E+  +  +++ Q+
Sbjct: 557 LEAERAKVVEKAQAEARAIIEEARAASDLALAELKEIKKRQDKLDWQQ 604


>gi|301789033|ref|XP_002929934.1| PREDICTED: myomegalin-like [Ailuropoda melanoleuca]
          Length = 2417

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 84/259 (32%), Gaps = 27/259 (10%)

Query: 394 SFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452
                +  A+ +  ++     +   +KL    SQ  +  L  L +    +         K
Sbjct: 161 PHQHTEALAQRDKRIEELNQSLAAQEKLVEQLSQEKQQLLHLLEEPASMDVQPMTEELLK 220

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA--ALLLTLINHPAILQEQYQELADIRY 510
             +    +    +   S     +L +K    EA   +L   +N   +  E        + 
Sbjct: 221 QQKLNSDETIITQQSVSDSHLAELQEKIQQTEATNKILQEKLN--EMSCELKSAQESSQK 278

Query: 511 DNNELQKLWSFLFS---------DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
            +  +Q L   L S           +E +     ++ + L +   G+L           G
Sbjct: 279 QDGTIQSLKETLKSRENETEELYQVIEGQNDTMAKLREMLHQSQLGQLHNS-------EG 331

Query: 562 LWSATTEANIVDVRQGY----QQALALYKRFRLLSRQKEEIEK--QIAQVTAKGEAEKTA 615
           + +A  +  ++D++        +   L +  R   RQ  + ++  Q  +  A+   ++  
Sbjct: 332 ISAAQQQVALLDLQSALFYSQLEIQKLQRAVRQKERQLADAKRCVQFVEAAAQEREQQKE 391

Query: 616 ILISILHEVHIQIHQIESQ 634
                  E+   + Q++ +
Sbjct: 392 ASWRHNQELRKALQQLQGE 410


>gi|291533975|emb|CBL07088.1| ATPases with chaperone activity, ATP-binding subunit [Megamonas
           hypermegale ART12/1]
          Length = 848

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/212 (9%), Positives = 64/212 (30%), Gaps = 10/212 (4%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y     DRL+++  + I   +      + +               + L       +  + 
Sbjct: 274 YRGDFEDRLKKIIDEIIENKNIILFIDEMHTLIGAGAAEGSMDAANILKPALSRGEIQVI 333

Query: 484 EAALLLTL---INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            A  L      I   + L+ ++Q +        +   +   + + + E           +
Sbjct: 334 GATTLKEYKKYIEKDSALERRFQTIMVNEPSVEDAISILKGIRNKYEEFHC-------AK 386

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +      +K   R + D  L     +       +   + + +      L ++ ++++K
Sbjct: 387 ITDEAIKAAVKISQRYITDRFLPDKAIDLMDEASAKVRLKTVNIPTNISQLEQKIQDLKK 446

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
              +     + E  A +     ++  ++   +
Sbjct: 447 AKEKAIDNQDYELAATIRDQEIQIKEELATAK 478


>gi|281353028|gb|EFB28612.1| hypothetical protein PANDA_009858 [Ailuropoda melanoleuca]
          Length = 702

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 88/262 (33%), Gaps = 25/262 (9%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  DE  +           +   + R    + +R +++QL ++         +   +  R
Sbjct: 280 DEMDELRQSSERAGQLEATLSSCRRRLGELRELRRQVRQLEERNAGHAERTRQLEDELRR 339

Query: 456 HRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLT--LINHPAILQEQYQEL----ADI 508
               +     + +Q   ++G+  ++    E  L     L     ++ ++ + L      +
Sbjct: 340 ASSLRAQLEAQRLQVQELQGQRQEEAMKAEKWLFECRNLEEKYELVTKEKERLLAERDSL 399

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLP-----EEIHQRLCERGFGELLKQLDRQVRDAGLW 563
           R  N EL+                 P     E +   +      E L +L R+ +     
Sbjct: 400 RDANEELRCAQLQPRGLTQADPSLDPTSPAVENLAAEILPAELRETLLRLQRENKQLCQQ 459

Query: 564 SATTEANIVDVRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKGEAE 612
            A       ++++  + A                +   L  Q E+++K + +    G+ E
Sbjct: 460 EAAYRERQEELQRHLEDANRARHGLETQLRLNQQQLSELRAQVEDLQKALQE--QGGKTE 517

Query: 613 KTAILISILHEVHIQIHQIESQ 634
            +A+L   L E   ++H+ + +
Sbjct: 518 DSALLKRKLEEHLQKLHEADLE 539


>gi|154332444|ref|XP_001562596.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1095

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/280 (10%), Positives = 91/280 (32%), Gaps = 16/280 (5%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +R   +    +L  +     ++  +   ++   +  +     E   ++  N + +   +
Sbjct: 439 MVRNSYEEEVMRLQKQLKSTEEVATQHVMQDMGQSAREAVERAEEARRSTENSLAEVMRK 498

Query: 422 YYYSQA-IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
             +++  ++   +             GR  +  A+  ++    + L      K  L  + 
Sbjct: 499 LKFAEEEVQSSRRNAEAAQYDVAQAQGRIQELQAKVEERAAQVRALETELQSKVNLGYEV 558

Query: 481 SLREAALLLTLINHPAILQEQYQELAD-IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +         + A  + + ++    +   + ELQ+  + + +          E    
Sbjct: 559 REAKERAERLQAEYDAERESRRRQHEAALEAKDRELQQCRADMLAVKQRFHALRAESDTS 618

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           +L   G  + L +               E  +  +R+  + +    ++++    +     
Sbjct: 619 KLDREGHQQRLTR----------QLTEREEEVAQLRRQLEDSRQSLQQWKATYEEL---- 664

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +Q    +  G  +        L E H ++ Q++ ++A +E
Sbjct: 665 QQSRDTSTDGYQKVVRERDEELQECHRRLRQMQDEKAELE 704


>gi|118586817|ref|ZP_01544252.1| stress response-related ATPase, class III [Oenococcus oeni ATCC
           BAA-1163]
 gi|118432737|gb|EAV39468.1| stress response-related ATPase, class III [Oenococcus oeni ATCC
           BAA-1163]
          Length = 829

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 70/223 (31%), Gaps = 17/223 (7%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWK----KNARHRDQKGPSQRLMQSSLVKGKLSK- 478
           Y     DRL+++  +   +        +      A   +    +  L++ +L +G+L   
Sbjct: 265 YRGEFEDRLKKIINEIHQDGQVILFIDELHTLIGAGGAEGALDASNLLKPALARGELQTI 324

Query: 479 -KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E       I     L+ ++  +        +  ++   L   + E         
Sbjct: 325 GATTFNEYQ---KYIESDQALERRFASVTIDEPSQEDSVEILKGLRPRYEEHHRVN---- 377

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              + +      +K   R + D  L     +       +     +    +   L RQ   
Sbjct: 378 ---ISDEAINAAVKLSSRYITDRFLPDKAIDLMDEAAAKVRIDTVQPEDKKVDLERQLNG 434

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           +  Q+    + G+ ++   +     ++  ++  +E  + +I G
Sbjct: 435 LRDQLDDAVSSGDFDQATKIRQQEIKIRKELAVVE-TDNLING 476


>gi|194466512|ref|ZP_03072499.1| DNA repair protein RecN [Lactobacillus reuteri 100-23]
 gi|194453548|gb|EDX42445.1| DNA repair protein RecN [Lactobacillus reuteri 100-23]
          Length = 559

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 77/269 (28%), Gaps = 14/269 (5%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
             + L   +       +  +        + +   +           +    Q    RL  
Sbjct: 133 EHQQLMQPETHLGMLDQFAAKEVQPLLQDYQEEYQAYSKLKAAVNKKQANEQQWAQRLDM 192

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
           L  +         +  +++    ++         ++ ++  ++      +A +L      
Sbjct: 193 LRYQVNEIAEANLKENEEDELISERDRLEHFQQINNALQLAVTTFNEGEQAPVL------ 246

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
              +      +  I   ++    L   L   +   +    E   Q        E L Q++
Sbjct: 247 -DQVATVMDSINAIAEFDDAYDNLSKALNDAYYALQDVANEASQQLDMLEFDDERLAQIE 305

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-------LSRQKEEIEKQIAQVTA 607
           +++   G         + DV + Y +                 L ++  E E +I +   
Sbjct: 306 QRLTTIGDLEHKYGDTLADVLKYYDKIKKELDSMEAAADSSSDLEQRLAEAENKIRETGR 365

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEA 636
           K    +      +  +VH Q+ ++  ++A
Sbjct: 366 KLSQVRQKAAHELGKKVHQQLKELYMEKA 394


>gi|126723207|ref|NP_001075777.1| myosin-11 [Oryctolagus cuniculus]
 gi|1346644|sp|P35748|MYH11_RABIT RecName: Full=Myosin-11; AltName: Full=Myosin heavy chain 11;
            AltName: Full=Myosin heavy chain, smooth muscle isoform;
            AltName: Full=SMMHC
 gi|165490|gb|AAA31395.1| myosin heavy chain [Oryctolagus cuniculus]
          Length = 1972

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 94/288 (32%), Gaps = 11/288 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                + + + + EK +++     +     E E        ++ ELE  L      +++++
Sbjct: 876  QELQQKHTQLSEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEE 935

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    QA R ++ Q       +        +K    +       + ++  ++       
Sbjct: 936  DRGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNN 995

Query: 480  PSLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEE 536
               +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E+
Sbjct: 996  KLSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1055

Query: 537  IHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----ALYKRFRL 590
            + +++        E +  L  Q+ +  +  A  E  +       +          K+ R 
Sbjct: 1056 LKRKMDGEASDLHEQIADLQAQIAELKMQLAKKEEELQAALARLEDETSQKNNALKKIRE 1115

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQEA 636
            L     ++++ +    A     +     L   L  +  ++       A
Sbjct: 1116 LEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTELEDTLDTTA 1163


>gi|70998070|ref|XP_753767.1| myosin type II heavy chain [Aspergillus fumigatus Af293]
 gi|66851403|gb|EAL91729.1| myosin type II heavy chain, putative [Aspergillus fumigatus Af293]
          Length = 2405

 Score = 41.4 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 101/311 (32%), Gaps = 29/311 (9%)

Query: 356  GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            G DP  +     K  F   ++  L        R    +  +      +  I  K      
Sbjct: 835  GLDPAWYRVGRTKVFFRAGVLAELEEQRDQLIRTIMTQFQSAARGFIQRRISNKRLYRAE 894

Query: 416  KDQKLR---YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
              + ++     Y    R+   +LF +            +   R    K    ++ Q    
Sbjct: 895  ATRIIQHNFQVYLDMKRNPWWRLFSRMKPLLGETRTANEVKKRDEKIKELEAKIKQGIAE 954

Query: 473  KGKLSKKPSLREAALLLT---LINHPAILQEQYQELADIRYDNNEL-QKLWSFL------ 522
            + KL ++    E  +      L +  A+  ++ +    ++    EL +KL   +      
Sbjct: 955  RQKLDEERRRTEIEIQKIQHTLESERALALDKEEIFKRLQLREIELTEKLAGAIADQESL 1014

Query: 523  ---FSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVR--- 575
                   +  K    E++ QR+ +    GE++++L+ + RD        +  + + R   
Sbjct: 1015 EDQLDTLIAAKKKADEQLSQRITQLEQAGEIIERLEAEKRDLQSRLDVLDRQLEEARSSV 1074

Query: 576  -------QGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                   +   Q + + +    L  R+ +++E ++ +     +  K A     L     Q
Sbjct: 1075 AEQEARVKELGQEIKMLQSHLSLKDRKIQDLEAKLLKTDQDLDI-KLARTSKDLELSKKQ 1133

Query: 628  IHQIESQEAMI 638
            I  +  +   I
Sbjct: 1134 IKDLVEENRSI 1144



 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/279 (9%), Positives = 82/279 (29%), Gaps = 7/279 (2%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +  +R                  +       +       D   +    L+   + ++ + 
Sbjct: 1159 EEMLRRKESEIAVLRNDTKKHQEEKEHLETEKASLSARHDNMQKRLRELQAEADAMRSE- 1217

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    + + D  + L +K   +            + +D K    +       + +    
Sbjct: 1218 -RSQLEREVADVKKLLEEKISEDAEAGESRKLLEQQIQDLKNQLFQAQADLSRERQSRDD 1276

Query: 480  PS-LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--E 536
               L E  L      + ++ + +     ++    + L++      +    +K    E  +
Sbjct: 1277 VQMLAEHNLAELRDKYASLNESKIIIEKEMYIQQDTLRRATEARAAAEKSRKELQTELIK 1336

Query: 537  IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            +  R  +     L  + + +       +   ++   D+ +  +Q   + +    LS + +
Sbjct: 1337 LRDRFTKVESARLNAEAEIERNVKKQANERLDSVRKDLEEKARQLEDVEEERSRLSLRVQ 1396

Query: 597  EIEKQIAQVT--AKGEAEKTAILISILHEVHIQIHQIES 633
            E+   IA+         +    L   L  +  ++   E+
Sbjct: 1397 ELTNAIAESENFRIRHDQHKERLERELVTLKGRLTASEN 1435



 Score = 37.6 bits (85), Expect = 6.3,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 80/241 (33%), Gaps = 12/241 (4%)

Query: 409  KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
            +           +    + +   ++ L      +         K  +             
Sbjct: 1065 RQLEEARSSVAEQEARVKELGQEIKMLQSHLSLKDRKIQDLEAKLLKTDQDLDIKLARTS 1124

Query: 469  SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
              L   K   K  + E   +   I+  +     Y+E   +R   +E+  L +       E
Sbjct: 1125 KDLELSKKQIKDLVEENRSIRQQISDLSSTSTGYEE--MLRRKESEIAVLRNDTKKHQEE 1182

Query: 529  QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----AL 584
            +++   E+           + L++L  +        +  E  + DV++  ++ +      
Sbjct: 1183 KEHLETEKASLSARHDNMQKRLRELQAEADAMRSERSQLEREVADVKKLLEEKISEDAEA 1242

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA----ILISI--LHEVHIQIHQIESQEAMI 638
             +  +LL +Q ++++ Q+ Q  A    E+ +     +++   L E+  +   +   + +I
Sbjct: 1243 GESRKLLEQQIQDLKNQLFQAQADLSRERQSRDDVQMLAEHNLAELRDKYASLNESKIII 1302

Query: 639  E 639
            E
Sbjct: 1303 E 1303



 Score = 37.6 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 91/291 (31%), Gaps = 19/291 (6%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +                 ++   + E E       +  A L   L++  +   ++ L   
Sbjct: 2017 KETSMEQTRLKYQREFSTLNNELEMEREKVLNVRSE-NARLREELEDLRSKWDNEVLNSS 2075

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                 + R++   Q   T          +            R +++S       +    +
Sbjct: 2076 TWAKEKARMEITLQDVTTSRDEAVNAHNEAQGRVVSLLSQVRSLRTSFDDITAERDTLFK 2135

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDN----NELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            E  +L   +       E+ +ELA     +      + +    L S   +Q+      + +
Sbjct: 2136 EKKMLEARLAE---AAERLEELAKGESPSMRSAASMDRELLELKSKLAQQEDVSAAAVGK 2192

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKR--------FRL 590
                      +++     R+A       +A +   +++   + + L  +         R 
Sbjct: 2193 MRRAEALVTEMQKEVTAEREANAQLFKDKAALEKQLKEAQLRCVDLETKSYSTGSQDVRF 2252

Query: 591  LSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQEAMIE 639
            L ++ +E+E  + +   K  +E+     +   + ++  Q+ + +   A +E
Sbjct: 2253 LHKRIKELETHLEEQENKHSSEQRSLRNVDRTVKDLQSQLERRDKLNAQLE 2303


>gi|327355464|gb|EGE84321.1| spindle-pole body protein [Ajellomyces dermatitidis ATCC 18188]
          Length = 1323

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 74/242 (30%), Gaps = 17/242 (7%)

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
                   +   H +D   R      I +RL           +       ++    ++  
Sbjct: 578 KARMQDDIDLAQHERDIARRE--RDDISERLHHADDDIRNGENAKDVLKTRHDALTNESA 635

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
             QR +  +  +    ++    E      + +   +  +   +L  +   ++E++ L   
Sbjct: 636 SLQRDLAQAKTRISNLEEQIEAERD--QYMNDTDKLRLQHRNQLDQL---HDEIESLKHD 690

Query: 522 LFS----DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           +         ++  +   +    L +    +      R +        T  +    ++  
Sbjct: 691 IEDREGQHATDRDRWDSLKRSLELQKEKVEQQAAGYKRTIDKLQNVETTLSSREDKLQNI 750

Query: 578 YQQALALYKR-FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +     + +   LL+RQ +E+   IA      E+++       L  V  ++     +E+
Sbjct: 751 IESEKQRHLQDEELLNRQIKELNDDIASKRQAAESQR-----QELLSVKEELRAARREES 805

Query: 637 MI 638
            +
Sbjct: 806 SL 807



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 92/322 (28%), Gaps = 15/322 (4%)

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFE 372
              R +   + DD   R  +   D+                   E               
Sbjct: 589 QHERDIARRERDDISERLHHADDDIRNGENAKDVLKTRHDALTNESASLQRDLAQAKTRI 648

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
             + E +      +  +T+       ++  +L   +++  + I+D++ ++   +   D L
Sbjct: 649 SNLEEQIEAERDQYMNDTDKLRLQHRNQLDQLHDEIESLKHDIEDREGQHATDRDRWDSL 708

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           ++  +    +       +K+          +    +  L     S+K            +
Sbjct: 709 KRSLELQKEKVEQQAAGYKRTIDKLQNVETTLSSREDKLQNIIESEKQRH---------L 759

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
               +L  Q +EL      N+++        S   E      E    R  E    E L+ 
Sbjct: 760 QDEELLNRQIKEL------NDDIASKRQAAESQRQELLSVKEELRAARREESSLREKLQA 813

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           L+  +           A   + ++     L    +     RQ        A +       
Sbjct: 814 LEDDIVVLQATLEEERAFAGNQQKSGASDLEKQLQAANKERQVARDNLANANIEIHNLRM 873

Query: 613 KTAILISILHEVHIQIHQIESQ 634
            +A L +   E+  QI +I+ Q
Sbjct: 874 ASAELEAERDELQSQIRRIQGQ 895


>gi|322489117|emb|CBZ24369.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1156

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 73/238 (30%), Gaps = 20/238 (8%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            Q +  R+ +L     +  +       +  R  +     Q     +     +    S  E
Sbjct: 144 KQQLVARVAELEMSMSSTPAPPLMAELRQLRETEALLRQQLQECQASTAATVGAFQSTVE 203

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             LL      P ++    + + +    N  +Q     L  +   +     E I +   + 
Sbjct: 204 NGLLAAR-QVPELIH-AMEAIKEDVRTNQTMQAAQRVLLEEMERRHAIECE-IEETYQKE 260

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               L +++     +A   +    A   +      Q  A     R L++Q  E +  +AQ
Sbjct: 261 EAKVLRERIADLEDEASAAAEREAAFASERGAMEAQLAAAQDAIRQLTQQHSEEQVALAQ 320

Query: 605 VTAKGEAEKTA--------------ILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
              + E + ++                   + E+  Q+  + + EA +       GR+
Sbjct: 321 KRQRAEQDASSNPTSIRGELTKFWYEGRDRIRELERQLQTMHTAEANLR---VSQGRV 375


>gi|312091137|ref|XP_003146873.1| major antigen [Loa loa]
 gi|307757963|gb|EFO17197.1| major antigen [Loa loa]
          Length = 738

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 71/212 (33%), Gaps = 9/212 (4%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
                Q  +             ++N  +   +  + RL Q+      +       +  L+
Sbjct: 231 SKLKDQENESQQIRLLLANFETERNTLNEKVRELAGRLQQTESTNTDIRDDNDRLKKDLI 290

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-- 546
               N   + +   Q L  I     + Q L   L S   +          Q+L       
Sbjct: 291 KASTNEAELRRTIDQNLRVIS----DNQILKDQLES--TQNDLSNANSRRQQLESELLIA 344

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
              L+ + ++  D+G      + ++ D     ++             Q+  IE +I Q  
Sbjct: 345 RSELRDMKQRFTDSGNRITDLQRHLNDAENDKKRLANRLHSLEKAVSQQRTIETEIRQQL 404

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           +   +E+   L + L +V  ++ ++E+++ +I
Sbjct: 405 SSALSER-NTLQNNLRDVQRRLARMETEKKII 435


>gi|303235683|ref|ZP_07322290.1| Toprim domain protein [Prevotella disiens FB035-09AN]
 gi|302484130|gb|EFL47118.1| Toprim domain protein [Prevotella disiens FB035-09AN]
          Length = 687

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 41/326 (12%), Positives = 95/326 (29%), Gaps = 38/326 (11%)

Query: 44  PFHDEKTPSFHCNDSK--GFY--YCFSCHV-KGDHLSFLSALLGCSFIESVQRLAAIAGV 98
           P +D++  S +       G Y    F      GD   F                AA+ G+
Sbjct: 35  PLYDDRRASCNIYLDNKSGCYRMKDFGNDAYSGDCFWF---------------AAAMLGL 79

Query: 99  PLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158
            +             + D ++++E         L  + ++  +       +      + +
Sbjct: 80  DV-------------RKDFVKVLETINR--DLQLNISIEREKYSNPHTMIMKLPKPIISQ 124

Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218
               P +    + +   +     + +        D         +    +   S++G+  
Sbjct: 125 SSNFPKTLDDRKWYKLIEQSFGIEELTYWQQYGIDTKTLQRFHVKALTRYESISNQGKPF 184

Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278
           A       +     Y       ++     L   +G           +   +    I +  
Sbjct: 185 ALVSTL--EEPIFAYCMGKFVKVYRPKSKLRFLYGGEKVDDYVFGFEQLPSKGDMIFITG 242

Query: 279 GYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           G  DVLSL   G   +  +     + E  +  L      +++ +D D+ GLR A + +++
Sbjct: 243 GEKDVLSLSAHGFNAICFNSETAQIPENIIEGLLLRFRHLIILYDTDETGLREAKRQVEV 302

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFI 363
           +    +    +        +D   F 
Sbjct: 303 LSKFKVLHLTLPLQGTKTEKDISDFF 328


>gi|301760430|ref|XP_002916011.1| PREDICTED: centriolin-like [Ailuropoda melanoleuca]
          Length = 2413

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 36/374 (9%), Positives = 104/374 (27%), Gaps = 29/374 (7%)

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDD----PGLRAAYKAIDLVLCHLI 343
           Q  ++  ++          L         I    D          +      +  +    
Sbjct: 347 QYEMEQELAFYKIDAKFEPLNYYPSEYVEIDKTPDESPYIGKSRYKRNMFTTESYIIANA 406

Query: 344 PGNRVNFVLLSRGEDP---DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE 400
              ++  +    GE P      +R +     +    E           E  +       +
Sbjct: 407 QTVKIKKMEPEEGEQPRNEHVNLRAHTSLDIQLEDKEKKISAAQTRLSELHDEIEKAEQQ 466

Query: 401 RAELEIHLKNCINHIK----DQKLRYYYSQAIRDRLQQL--FQKYITEHSGYGRYWKKNA 454
             +     K     I+     +  +    + +  ++Q L   ++   +        ++  
Sbjct: 467 ILKATEEFKQLEEAIQLKKISESEKDLLFKQLSGKIQLLRKLRQEAMDLETQTEKQRQEI 526

Query: 455 RHRDQKGPSQRLMQSSLVKGKLS-----KKPSLREAALLLTLINHPAILQEQYQELADIR 509
             +  +    ++   SL            +   +E  L +    +  +     + L+ I 
Sbjct: 527 DEKQNEIKDLQIAIDSLDSRDPKHCHMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIA 586

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
            +  E++ L   L    +     L +++   +   G  E L+ +  Q   A       + 
Sbjct: 587 KETEEIKDLEQQLTEGQIAANEALKKDLESVIS--GLQEYLETVKSQAAQAQSECRKLQD 644

Query: 570 NIVDVRQGYQQALALYKRFRLL-------SRQKEEIEKQIAQVTAKG-EAEKTAILISIL 621
               + Q   +      +  ++        ++  E+E  + +        ++T   +S  
Sbjct: 645 EKETLLQRLSEVEQERDQLEIVAIDAENMRKELAELESALQEQHEVNVSLQQTQGDLSAY 704

Query: 622 H-EVHIQIHQIESQ 634
             E+  Q+   +++
Sbjct: 705 EAELEAQLKVRDAE 718


>gi|281350050|gb|EFB25634.1| hypothetical protein PANDA_008591 [Ailuropoda melanoleuca]
          Length = 2007

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 79/239 (33%), Gaps = 39/239 (16%)

Query: 412  INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
               +  + +++  S  +   +  L  +     +G GR  ++  R + ++   +R      
Sbjct: 1224 YKEVTQEVVKHERSPEVLREIDHLKAQLNELVNGSGRAQEQLIRLQGERDEWKRERSKVE 1283

Query: 472  VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
             K    +     +  +L                         E ++L   +      QK 
Sbjct: 1284 TKTVNKEVVRHEKDPVLE-----------------------KEAERLRQEVRE--AAQKR 1318

Query: 532  FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRF 588
               E++   L  R    LL++   + +        ++ +     D  +  Q       R 
Sbjct: 1319 RAAEDLVHELQNRYL--LLERRRPEEKVVVQEVVVSQKDPKLREDHSRLSQSLDEEAGRR 1376

Query: 589  RLLSRQKEEIEKQIAQVTA----KGEAEKTAILISILHEVHIQIHQIES-----QEAMI 638
            R L R+ +++   + +  +    + +  K   L   L ++ ++I ++E      QE +I
Sbjct: 1377 RQLEREVQQLRASVQEKESLLSFQEDRSKKLALERELRQLTLRIQELEKRLPVVQEKII 1435


>gi|240275736|gb|EER39249.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
 gi|325093109|gb|EGC46419.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
          Length = 658

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 7/118 (5%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           +        +   L E+         D+  +  G+     +  + +  +  +QA      
Sbjct: 87  DDARAQNAALIDELKEQVQKAETVS-DQYRKQLGVLQLRLDEAVSEQGRLEEQAHEKDSA 145

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKT----AILISILHE--VHIQIHQIESQEAMIE 639
              L  + +E+ +QI  +    E E+             E  +   I +++   A  E
Sbjct: 146 LGALQAEVKELTRQIRDLEQAHETERIAMAKEKEQQAKREEDLESTIQRLKETIAQKE 203


>gi|237741242|ref|ZP_04571723.1| replicative DNA helicase [Fusobacterium sp. 4_1_13]
 gi|229430774|gb|EEO40986.1| replicative DNA helicase [Fusobacterium sp. 4_1_13]
          Length = 446

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/159 (8%), Positives = 50/159 (31%), Gaps = 4/159 (2%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K        E AL+  +  +  +  E    +    +   E   ++  +   + + K    
Sbjct: 7   KKIPHSLEAERALIGGIFYNQDLFDEIRDIVKVEDFYKVEHSAIYDAIEKVYSDSKGIDA 66

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I + + +       +++ + + D      ++   +        +  A+ +R   +  +
Sbjct: 67  ILIDEEIKKSNSKNK-EEILQVLSDILDEITSSYNLLEYAN--LIKEKAMLRRLGNVGVE 123

Query: 595 KEEIE-KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             ++    +       +  +  +L    + +   I  ++
Sbjct: 124 ITQLAYNDVRVAEEIIDEAEAKVLNLSKNILKNSIVDMK 162


>gi|198418329|ref|XP_002121053.1| PREDICTED: similar to Trichohyalin [Ciona intestinalis]
          Length = 2440

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 4/129 (3%)

Query: 512  NNELQKLWSFL-FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
             +ELQ+L+S L  S+   ++    E++ QRL  +   +L ++   Q       +   E +
Sbjct: 1674 TDELQRLFSALAISESGSERLSQEEKLKQRLERK--KKLKEERASQGLSNDDATLERELD 1731

Query: 571  IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS-ILHEVHIQIH 629
              +  +  ++   L         +K+ +   + +       E+   L +  L     Q+ 
Sbjct: 1732 AEESLEKVKRKNVLLDLEANFENEKKSLLADLRRHDDMISEERKRQLAAAHLRRERRQLQ 1791

Query: 630  QIESQEAMI 638
              ++  A++
Sbjct: 1792 SEQNYSAIM 1800


>gi|149727716|ref|XP_001502939.1| PREDICTED: dystrobrevin, beta [Equus caballus]
          Length = 627

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 57/180 (31%), Gaps = 15/180 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 L   +   +    E AL+ + +             + +   + E + +  +   
Sbjct: 355 PTPTKRLQYSQDRPRHLADEHALIASYVARLQHCARVLDSPSRL---DEEHRLIARYAAR 411

Query: 525 DFVEQKYFL--PEEI-HQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDVRQG 577
              E       P ++       +   +L+ +L+ + R+            E       + 
Sbjct: 412 LAAEAGNMTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEK 471

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            QQ   L    RLL ++K+E+E     + +   +   +    L+ +L E   Q    ++ 
Sbjct: 472 AQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQ-LEGLMKLLKE-EEQKQAAQAT 529


>gi|19879404|gb|AAK85118.1| non-muscle myosin II heavy chain [Loligo pealei]
          Length = 1964

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 25/265 (9%), Positives = 89/265 (33%), Gaps = 22/265 (8%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            +     E E       + + ELE  L      ++++     +    +++L+   +    +
Sbjct: 900  ETELCTEAEETRILLNNRKIELEEVLNETEARLEEEMRNSEFLHDEKNKLRLTIEDLEEQ 959

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  +K    +       + ++  +     S     +E   L          ++ +
Sbjct: 960  LEEEEQARQKLQMEKLSVDQRVKKLEEDIAVNTDSGNKLSKEKKYLE---------EKIH 1010

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
            +  + +  + ++ ++L                +   +    +   ++ ++L+  + D   
Sbjct: 1011 ELTSKLVGEEDKFKQLGKQKSRAESALADLETQVQRETQNRQELEKVKRKLEADLADHRD 1070

Query: 563  WSATTEANIVDVRQGYQQALALYKRFRLLS-----------RQKEEIEKQIAQVTAKGEA 611
                  A + +V+    +     +     S           +Q  E++ QI +++   +A
Sbjct: 1071 QLNEKRAQVEEVQSQLARREEELQSALQKSEDESVAKGTTLKQLRELQSQIQELSEDLDA 1130

Query: 612  EKTAILISILH--EVHIQIHQIESQ 634
            EK +   +     +++ ++  ++S+
Sbjct: 1131 EKQSREKAEKQKRDLNEELEALKSE 1155



 Score = 37.9 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 82/280 (29%), Gaps = 17/280 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                      A    + + L   D               +  AE+E         +  +K
Sbjct: 1562 SKLRNEVNLQAIISKLQKELSGRDENADEIKRGLQRQLKELEAEVEDARTQKTAAVHGKK 1621

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--SSLVKGKLS 477
               +    + ++L     K   +     R      +   ++    R  Q  ++     + 
Sbjct: 1622 KLEHDLNQLSEQL-IAVTKQKEDAVKQARKANSQMKEYQRETEEARAAQHDANTAFKDMK 1680

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            KK    E  L+  ++       E+ ++ A+      E  +L   + +  V +     E+ 
Sbjct: 1681 KKVKSLEDELV--VMQEDVAAAERARKNAET-----ERDELQEEIANGTVSKSSLNEEKR 1733

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA----LALYKRFRLLSR 593
               L      +LL +           +    A+   +             L  +   L R
Sbjct: 1734 RLELRISELEDLLDEEQNNSEILIDKNKKVNAHYEQLLTELNAEKSTSQTLENQRLSLER 1793

Query: 594  QKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIHQ 630
            Q ++++ ++ ++  + +       A L   +  +  Q+ Q
Sbjct: 1794 QNKDLKAKVQELENQAKIKQKTMIAALEGKIANLEDQLDQ 1833


>gi|18308026|gb|AAL67804.1| pneumococcal surface protein A [Streptococcus pneumoniae]
          Length = 608

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 46/127 (36%), Gaps = 1/127 (0%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           +   L   L    VE K    E++   +          Q         L  A  +     
Sbjct: 144 DYATLKLALAKKEVEAKELEIEKLQYEISTLEQEVATAQHQVDNLKKLLAGADPDDGTEV 203

Query: 574 VRQGYQQ-ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +    ++    L  +   L++++ E+EK +  +  +G+ +      +   E+  +  +++
Sbjct: 204 IEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQ 263

Query: 633 SQEAMIE 639
           ++ A +E
Sbjct: 264 NKVADLE 270



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L ++       +  L++++ +  +      A+ 
Sbjct: 228 ELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLEKEISNLEI--LLGGADS 285

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            D     Q  LA   +   L + ++E++  + ++   G+ E+T
Sbjct: 286 EDDTAALQNKLA--TKKAELEKTQKELDAALNELGPDGDEEET 326


>gi|78032595|emb|CAI65391.1| ATP-dependent Clp protease, ATP binding subunit ClpC [Oenococcus
           oeni]
          Length = 823

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 70/223 (31%), Gaps = 17/223 (7%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWK----KNARHRDQKGPSQRLMQSSLVKGKLSK- 478
           Y     DRL+++  +   +        +      A   +    +  L++ +L +G+L   
Sbjct: 259 YRGEFEDRLKKIINEIHQDGQVILFIDELHTLIGAGGAEGALDASNLLKPALARGELQTI 318

Query: 479 -KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E       I     L+ ++  +        +  ++   L   + E         
Sbjct: 319 GATTFNEYQ---KYIESDQALERRFASVTIDEPSQEDSVEILKGLRPRYEEHHRVN---- 371

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              + +      +K   R + D  L     +       +     +    +   L RQ   
Sbjct: 372 ---ISDEAINAAVKLSSRYITDRFLPDKAIDLMDEAAAKVRIDTVQPEDKKVDLERQLNG 428

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           +  Q+    + G+ ++   +     ++  ++  +E  + +I G
Sbjct: 429 LRDQLDDAVSSGDFDQATKIRQQEIKIRKELAVVE-TDNLING 470


>gi|331652449|ref|ZP_08353468.1| putative alpha helix protein [Escherichia coli M718]
 gi|331050727|gb|EGI22785.1| putative alpha helix protein [Escherichia coli M718]
          Length = 1077

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 5/122 (4%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L + L +   +Q          ++    F    +++    R+    +           + 
Sbjct: 146 LVAALRNLEQQQDELNAAFASGKINGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQ 205

Query: 578 YQQALALYKRFRLLS---RQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIE 632
                 L  +   +     +  E +KQ+ +  AKG    E    L   L  +  ++   +
Sbjct: 206 VAALQRLIAQLDPVGTAFNRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEVTQ 265

Query: 633 SQ 634
           SQ
Sbjct: 266 SQ 267


>gi|292492472|ref|YP_003527911.1| hypothetical protein Nhal_2436 [Nitrosococcus halophilus Nc4]
 gi|291581067|gb|ADE15524.1| hypothetical protein Nhal_2436 [Nitrosococcus halophilus Nc4]
          Length = 365

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 40/100 (40%), Gaps = 2/100 (2%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E +   L      E L +++R++    +W+    A  +   +   QA+        L  +
Sbjct: 19  EALRGYLDFAAKQERLVEVERELAIPSVWNEPERAQRLGQERAQLQAVVGP--LAALGEE 76

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             +I++       +G+ +    + + L  +  ++ ++E Q
Sbjct: 77  IGQIKELFELAVEEGDEDTAREVSAELETMEQRLEKLEFQ 116


>gi|195501085|ref|XP_002097651.1| GE26337 [Drosophila yakuba]
 gi|194183752|gb|EDW97363.1| GE26337 [Drosophila yakuba]
          Length = 2101

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 78/235 (33%), Gaps = 32/235 (13%)

Query: 402  AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
             ++   + +    +++Q  R    +  + +     Q          +  ++  R +D   
Sbjct: 1509 QKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDASRQDRQAKERYGREKDVLQ 1568

Query: 462  PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY---DNNELQKL 518
              +  ++ +L   +L     L+E  L               +EL ++ +      E  +L
Sbjct: 1569 AEKFTLEQTLADTRLD--LDLKEEKLASL-----------QRELEEMTFGGGTEEEFAQL 1615

Query: 519  WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                       +     E   +  E    E+  Q+    +       T E    + R+  
Sbjct: 1616 R----------RSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRES 1665

Query: 579  QQALALYKRFR-LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            QQ     +  R    ++ + +E Q+     + E E+  +L+   HE+  ++  +E
Sbjct: 1666 QQRDEELEEVRGNGYKKIKALECQL-----ETEHEERTLLLREKHELERRLSSME 1715


>gi|195396755|ref|XP_002056994.1| GJ16588 [Drosophila virilis]
 gi|194146761|gb|EDW62480.1| GJ16588 [Drosophila virilis]
          Length = 551

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 43/121 (35%), Gaps = 6/121 (4%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           +   L  + V+       E+            +K++  ++     +++     +      
Sbjct: 422 IEQRLKKELVDSGLIDASEMAAHEDVDEVLLEIKRVTAEINSVAQFNSDELKRLRAAASE 481

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAK------GEAEKTAILISILHEVHIQIHQI 631
             + + L ++   + ++  E  K++ Q  AK       E ++   L S    +  Q+ ++
Sbjct: 482 EIKRIELKRKLDTIDQEILECYKRMLQYRAKRKGHTSEEKQEILRLTSEQRALAEQLERM 541

Query: 632 E 632
           +
Sbjct: 542 Q 542


>gi|189531040|ref|XP_001921927.1| PREDICTED: protein Daple [Danio rerio]
          Length = 1997

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 29/280 (10%), Positives = 87/280 (31%), Gaps = 14/280 (5%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +           +      +  ++   +  T+  S      +A  E  ++      +   
Sbjct: 537 EKQRMEKTLETIQAEKDRQISELEQEKEHLTQAVSSLRKRAQANSEARVREVETENR--- 593

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           + +        +L +L  +            ++  R  + +    RL +      + +  
Sbjct: 594 ILHQTISETGGKLARLEAEKRQVTKELESLRERGERCEELEREVPRLERVREQLQREAAA 653

Query: 480 PSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             +  E A    L    A L++  + L  +  D  +   L   +     + +    E + 
Sbjct: 654 LKIGSERA--EALERENATLEQDNRRLKKLA-DTAQNATLRLAVLE--KDHQQLEEENLE 708

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEA---NIVDVRQGYQQALALYKRFRLLSRQK 595
           QR           +L +  ++        E     + ++R   +++  L K    LS + 
Sbjct: 709 QRRALETLRPAAARLAQLQQEHAELEREHEEMCRTMEELRSQAKRSERLEKSCGSLSLEN 768

Query: 596 EEIEKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIES 633
           + +++ +   + K  G   +     + + ++  ++  +  
Sbjct: 769 QRLQQTLENSSTKMQGLESELRQNEAEMKDLQRELEGLRQ 808


>gi|114669070|ref|XP_001165174.1| PREDICTED: myosin, heavy polypeptide 8, skeletal muscle, perinatal
            isoform 1 [Pan troglodytes]
          Length = 1947

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1574 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHTRVVETMQSTLDAEIRSRNDALRVKKKMEG 1633

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1634 DLNEM-EIQLNHANRLAAESLRNYRNTQGILKETQLHLDDALRGQEDLKEQ------LAI 1686

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     + Q + +EL          +K+    L       +    +       ++     
Sbjct: 1687 VERRANLQQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1746

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1747 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1806

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1807 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1838


>gi|322504309|emb|CAM41713.2| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1095

 Score = 41.4 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 28/280 (10%), Positives = 91/280 (32%), Gaps = 16/280 (5%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +R   +    +L  +     ++  +   ++   +  +     E   ++  N + +   +
Sbjct: 439 MVRNSYEEEVMRLQKQLKSTEEVATQHVMQDMGQSAREAVERAEEARRSTENSLAEVMRK 498

Query: 422 YYYSQA-IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
             +++  ++   +             GR  +  A+  ++    + L      K  L  + 
Sbjct: 499 LKFAEEEVQSSRRNAEAAQYDVAQAQGRIQELQAKVEERAAQVRALETELQSKVNLGYEV 558

Query: 481 SLREAALLLTLINHPAILQEQYQELAD-IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +         + A  + + ++    +   + ELQ+  + + +          E    
Sbjct: 559 REAKERAERLQAEYDAERESRRRQHEAALEAKDRELQQCRADMLAVKQRFHALRAESDTS 618

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           +L   G  + L +               E  +  +R+  + +    ++++    +     
Sbjct: 619 KLDREGHQQRLTR----------QLTEREEEVAQLRRQLEDSRQSLQQWKATYEEL---- 664

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +Q    +  G  +        L E H ++ Q++ ++A +E
Sbjct: 665 QQSRDTSTDGYQKVVRERDEELQECHRRLRQMQDEKAELE 704


>gi|323136492|ref|ZP_08071574.1| replicative DNA helicase [Methylocystis sp. ATCC 49242]
 gi|322398566|gb|EFY01086.1| replicative DNA helicase [Methylocystis sp. ATCC 49242]
          Length = 503

 Score = 41.4 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/162 (8%), Positives = 38/162 (23%), Gaps = 14/162 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS---F 521
           ++ Q      +        E ALL  ++ +          L    +     ++++     
Sbjct: 14  QVAQPETPAYRTPPHNIEAEQALLGAILVNNDAFDRVSDFLRPEHFSEELHRRIFEVAGQ 73

Query: 522 LFSDFVEQKYFLPEEIHQRLC-------ERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
           L            +     +        +     L  +    +          +      
Sbjct: 74  LIRAGKLATVVTLKTFLAEIELPAGVTIQAYLARLAAEATTIINAEDYGRIVHDLATRRD 133

Query: 575 RQGYQQALALYKRFRLL----SRQKEEIEKQIAQVTAKGEAE 612
                + +        +      Q EE E+++  +   G  +
Sbjct: 134 LIAIGEDIVNTAYDSPIDATPRAQIEEAERKLYSIAETGRYD 175


>gi|319411709|emb|CBQ73753.1| related to NUM1-nuclear migration protein [Sporisorium reilianum]
          Length = 2365

 Score = 41.4 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/295 (9%), Positives = 83/295 (28%), Gaps = 26/295 (8%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
                   FE+ + E   L +         +     +    LE      +  ++++  +  
Sbjct: 903  HKTSSEDFERKVKEEKELKEASHTFALSQKDRQHKESLDALEASHAEAVQGLRNEHQQLL 962

Query: 424  YSQA--IRD---RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +   + +   +L +  +      + +        +   +           L +   S 
Sbjct: 963  AIREKALAEADAQLAEREKASNKLVASHAAEVASLKQQHAEAVAKHDKAIKELSESHASA 1022

Query: 479  KPSLREA---ALLLTLINHPAILQEQYQELADIRYDN----NELQKLWSFL-------FS 524
              +L++     +     ++  +      ELA ++  +    +E +K    L        +
Sbjct: 1023 VAALQQRHGEEVAKHQDSNRDLAASHASELATLQDGHRAKLDEHEKFVKALSDSHVAAVA 1082

Query: 525  DFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
               +            L           K+LD + ++    +   E+   ++ +  +   
Sbjct: 1083 ALEQGHRQALATRDAELESAKKELEARSKELDARAQELASRTKELESAKAEIDELQKSIA 1142

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEA-----EKTAILISILHEVHIQIHQIE 632
            +L      L +Q  E++K       +        +     +    E   ++ +  
Sbjct: 1143 SLRAETEQLKQQLAELQKSHTAAERELSETKSNLDMVNEKVRRQEETARELSRQR 1197


>gi|309355317|emb|CAP39055.2| hypothetical protein CBG_22474 [Caenorhabditis briggsae AF16]
          Length = 1494

 Score = 41.4 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 28/286 (9%), Positives = 84/286 (29%), Gaps = 33/286 (11%)

Query: 379  LPLVDMLWKRETENRSFNTPDERAEL--EIHLKNCINHIKDQKLRYY------------Y 424
            +P  +       E       + +  L      +   N ++D   +              Y
Sbjct: 902  MPNHEPELLALREQVQHLQNELQTSLNQRRDFEIHYNQLRDAAEQKESTIAQLNETANDY 961

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + ++    ++        +      +       ++  +    Q    + +   +    E
Sbjct: 962  KERLQKASDEIQDWARQLDTTRAELNELQQTAYGRQQEAIERRQQEGDEYEQKIQELTSE 1021

Query: 485  AALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ---- 539
               L   I +     +   ++L + R  N+ LQ     L ++    K             
Sbjct: 1022 KKALAGRIQNLEEDFERVQRQLEEERELNSGLQGSVQRLETELEASKNANDAAESGGSGW 1081

Query: 540  ----RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                 + +    + L+++     +       T+  +  ++   +Q+     R+R L  ++
Sbjct: 1082 SDCGDIEDVEKEKDLQKVLEDDENLQKAQKETQEELSRLKLKLEQSEKEATRYRNLYERQ 1141

Query: 596  EE--------IEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQI 631
             E        IE ++     + +  +     L     E+  +++++
Sbjct: 1142 NETESRGAIEIELKLKNAENEIQEARRKIEELSGEKKELGDRLNEM 1187


>gi|260946677|ref|XP_002617636.1| hypothetical protein CLUG_03080 [Clavispora lusitaniae ATCC 42720]
 gi|238849490|gb|EEQ38954.1| hypothetical protein CLUG_03080 [Clavispora lusitaniae ATCC 42720]
          Length = 1170

 Score = 41.4 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 10/163 (6%)

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            +G LS     + +++LLT+  +  ++       A +   ++EL +L          +  
Sbjct: 661 PEGNLSGGSRKQGSSILLTMQKYNRLVASIKDLEAKLSQIHHELNRL-----EKLGHETK 715

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
            L  E++  L +     L ++L      + +    +E+N+ ++     +          L
Sbjct: 716 ALQNELN--LSKHELSLLQRKLAN--NPSSMIIKESESNMKEIEHLNAKIEIEKTACVSL 771

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             Q   IE  I +        K   L   L E+  ++   E++
Sbjct: 772 EDQISSIENDIKEFNQDKGL-KLKELEGELKELKKKLSHQEAE 813


>gi|225860164|ref|YP_002741673.1| pneumococcal surface protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298501925|ref|YP_003723865.1| manganese ABC transporter substrate-binding lipoprotein
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225727349|gb|ACO23200.1| pneumococcal surface protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237520|gb|ADI68651.1| pneumococcal surface protein A (manganese ABC transporter
           substrate-binding lipoprotein) [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327390537|gb|EGE88877.1| choline binding protein A [Streptococcus pneumoniae GA04375]
          Length = 724

 Score = 41.4 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 46/127 (36%), Gaps = 1/127 (0%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           +   L   L    VE K    E++   +          Q         L  A  +     
Sbjct: 176 DYATLKLALAKKEVEAKELEIEKLQYEISTLEQEVATAQHQVDNLKKLLAGADPDDGTEV 235

Query: 574 VRQGYQQ-ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +    ++    L  +   L++++ E+EK +  +  +G+ +      +   E+  +  +++
Sbjct: 236 IEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQ 295

Query: 633 SQEAMIE 639
           ++ A +E
Sbjct: 296 NKVADLE 302



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L ++       +  L++++ +  +      A+ 
Sbjct: 341 ELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLEKEISNLEI--LLGGADS 398

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            D     Q  LA   +   L + ++E++  + ++   G+ E+T
Sbjct: 399 EDDTAALQNKLA--TKKAELEKTQKELDAALNELGPDGDEEET 439


>gi|73983740|ref|XP_540883.2| PREDICTED: similar to Akt-phosphorylation enhancer [Canis
           familiaris]
          Length = 1348

 Score = 41.4 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 15/139 (10%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           ++L     ++    +    +   Q           ++L+   ++    +    A   + R
Sbjct: 768 EELAQARKTEAEAHREVEAQAREQARLREAVEAAGRELEAASQEREALAEALAAAGRERR 827

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-------------AILISILH 622
           Q  ++A  L  R      Q +E+E Q  +   + E E+                L + L 
Sbjct: 828 QWEREAPRLRARAETAEEQLQELESQDRRHQQEAERERQALREELEKAMVRGRELGARLE 887

Query: 623 EVHIQIHQ--IESQEAMIE 639
            +  ++ Q  +E QE + E
Sbjct: 888 HLQSELEQAALERQEFLRE 906


>gi|109322|pir||A41604 myosin heavy chain, smooth muscle, long splice form - rabbit
          Length = 1972

 Score = 41.4 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 94/288 (32%), Gaps = 11/288 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                + + + + EK +++     +     E E        ++ ELE  L      +++++
Sbjct: 876  QELQQKHTQLSEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEE 935

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    QA R ++ Q       +        +K    +       + ++  ++       
Sbjct: 936  DRGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNN 995

Query: 480  PSLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEE 536
               +E  LL   I+     L E+ ++  ++    N+ + + S L       E+     E+
Sbjct: 996  KLSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1055

Query: 537  IHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----ALYKRFRL 590
            + +++        E +  L  Q+ +  +  A  E  +       +          K+ R 
Sbjct: 1056 LKRKMDGEASDLHEQIADLQAQIAELKMQLAKKEEELQAALARLEDETSQKNNALKKIRE 1115

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQEA 636
            L     ++++ +    A     +     L   L  +  ++       A
Sbjct: 1116 LEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTELEDTLDTTA 1163


>gi|146280211|ref|YP_001170368.1| hypothetical protein Rsph17025_4213 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558452|gb|ABP73063.1| hypothetical protein Rsph17025_4213 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 112

 Score = 41.4 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 31  KTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIES 88
               +  ++ A  P   ++   SF  N   G +  F+     GD +S  + L G   +++
Sbjct: 41  GGRRMGAEFVAQNPTRADRRAGSFKINLRTGKWADFATGDAGGDPVSLYAYLRGLPQLQA 100

Query: 89  VQRLAAIAGVPL 100
            + LA   GV  
Sbjct: 101 AKTLAEDLGVTP 112


>gi|157158933|ref|YP_001465831.1| type III restriction enzyme, res subunit [Escherichia coli E24377A]
 gi|300938291|ref|ZP_07153056.1| protein, SNF2 family [Escherichia coli MS 21-1]
 gi|157080963|gb|ABV20671.1| type III restriction enzyme, res subunit [Escherichia coli E24377A]
 gi|300456746|gb|EFK20239.1| protein, SNF2 family [Escherichia coli MS 21-1]
          Length = 963

 Score = 41.4 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/224 (8%), Positives = 59/224 (26%), Gaps = 10/224 (4%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              +      + +    E   + + + +      +            ++  + +     E
Sbjct: 203 LMELYGMSTLIDEHTFGEVKAFRKQYMQADSDIAELKGRLSRFIKRTLRKNVLEYIKYTE 262

Query: 485 AALLLTLI----NHPAILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKY----FLP 534
              +            + +   + L            + L   +    +           
Sbjct: 263 RKAITIPFYPSEQEQDLYERVQKLLEREDSYALPKRHRHLTGLILRKLLSSSTKAVLNNL 322

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           + +  RL       +++     ++   +     +  + D                 L  +
Sbjct: 323 QILKSRLERLKLEGIVEDDMNIIQQIIMDDDLEDDIVEDAESVALDTECKVVDSDALQAE 382

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
             E+E  I +    G   K+  L+S L +   Q+ ++ + + +I
Sbjct: 383 INELESLIVKAEQIGTDTKSKELLSGLEQGFAQLAEMGAAKKVI 426


>gi|71004828|ref|XP_757080.1| hypothetical protein UM00933.1 [Ustilago maydis 521]
 gi|46096884|gb|EAK82117.1| hypothetical protein UM00933.1 [Ustilago maydis 521]
          Length = 1290

 Score = 41.4 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 66/221 (29%), Gaps = 24/221 (10%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           L     K         +  +++      +          L     S              
Sbjct: 455 LSAAEAKLADAKESAAKSEEQSGPASFDRVKELEAEVERLRTQTGSSDEQRANQT----- 509

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK----------YFLPEEIHQRL 541
             H + + E+ + +A      ++L+   S   S                     E+   L
Sbjct: 510 SQHNSAISEKEELIATAHSKIDDLEAQLSEARSALENASSARDASAKVSDPNESEVVAAL 569

Query: 542 CERGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-----LSRQ 594
            ++    L  +++     + A   + +    I ++ Q  QQ    +++        L+ Q
Sbjct: 570 QQQLTESLKRIEEHQISAKQAHDETLSANKAIAELEQRVQQLTLDHEQKAAAGDSQLTEQ 629

Query: 595 KEEIEKQIAQVTAKGEAEKTA--ILISILHEVHIQIHQIES 633
           ++  E  + +   K  A  +    L + L E+  Q+ + ++
Sbjct: 630 RQAHESLVKEANDKASALTSQNKRLQAELDELKSQLLEAQN 670


>gi|325847034|ref|ZP_08169860.1| exonuclease SbcCD, C subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481006|gb|EGC84051.1| exonuclease SbcCD, C subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 1020

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 107/348 (30%), Gaps = 38/348 (10%)

Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380
            + D        K     L              +  +D    I    K    KL      
Sbjct: 307 NELDFSQKALLIKPYYENLSDNKKNYNDLEKKFNEEKDKFKIIEKNLKDLRGKLGNIEKI 366

Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL-------- 432
              +  K+E   ++     +  EL    K    +IK+  L   Y   I   L        
Sbjct: 367 ENIIDQKKENIVKNDQIMKKFNELLSIEKELEKNIKNIDLSKKYKDQIEGLLEEKNQTSD 426

Query: 433 --QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             + L  K +       +   +  + +D+    Q L + SL   K  K     E   L  
Sbjct: 427 NIRALSDKLLDITKDLEKINDQGHKIKDELRDYQSLYEKSLENDKKIKDLEKLEKEFLKV 486

Query: 491 ------LINHPAILQEQYQELADIRYDN--------NELQKLWSFLFSDFVEQKYFLPEE 536
                 +     + +E  + +    +               ++        E   F  E+
Sbjct: 487 EADFKNIGEKLKLAEESKKSILINEFRKDLEKNGICPICGSIYDKKVEFL-EVGDFDLEK 545

Query: 537 IHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
           I Q   +     +   E    L   + +        E ++ + ++ YQ    LYK+   L
Sbjct: 546 IRQDFVDLKIKLKYLNEKKSDLKNSIDNKIKDPKVYEESLNEYKKSYQDLRNLYKKNLGL 605

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           S +K + +K++ Q        K  ++ S + ++  ++ ++++ + + +
Sbjct: 606 SDEKNKNKKKLDQ--------KANLIESEIKDLKNKLDKLQNLDDISD 645


>gi|311267342|ref|XP_003131531.1| PREDICTED: keratin, type I cytoskeletal 24-like [Sus scrofa]
          Length = 441

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 72/222 (32%), Gaps = 20/222 (9%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           Q + DRL     K             K     D+ GP  R + S     K          
Sbjct: 151 QNLNDRLANYLDKVRALEEANADLEHKIKEWYDKFGPGSRDVGSGRDYSKYYPIIDDLRK 210

Query: 486 ALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-- 542
            +    I +  I+ +     LA   +      +L+       VE       ++   L   
Sbjct: 211 QITAATIENAGIVLQIDNARLAADDFRLKYENELY---LRQSVEADINGLRKVLDDLTMT 267

Query: 543 ----ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               E     L+++L   ++      ++ E  + D   GY        +   +  Q   +
Sbjct: 268 RSDLEMQMENLVEEL-TYLKKNHEEKSSLEGTLADTEAGY------MAQLSQIQIQISSL 320

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQEAMIE 639
           E+QI Q+   GE E        L ++  ++  +IE+   +++
Sbjct: 321 EEQICQIR--GETECQNAEYEQLLDIKTRLEMEIETYRRLLD 360


>gi|300215280|gb|ADJ79696.1| Replicative DNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 463

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 47/162 (29%), Gaps = 11/162 (6%)

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
           ++   L  +    E A+L  +  +   L +  + +    +     Q L+  + +   + +
Sbjct: 5   IMTDNLPPQNIEAEQAVLGAIFLNTDALADAMEYVEADDFYRRAHQILFQAMVNLNNDGE 64

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 +   L        L  +      A L ++   A       GY   +   K   +
Sbjct: 65  AIDVLTVQNYLTTN---NQLDDVGGVAYIAELATSVPTA----ANAGYYAKIVEGK--SM 115

Query: 591 LSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQ 630
           L R        I Q     +            + +V  + ++
Sbjct: 116 LRRLISTATNIITQANNGDDDVPSLLDSAERQIMDVSERRNR 157


>gi|315587030|gb|ADU41411.1| ATPase [Helicobacter pylori 35A]
          Length = 862

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 92/290 (31%), Gaps = 19/290 (6%)

Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
                   + +    D    +    +   E+         + ++ R     S N  +   
Sbjct: 333 KHETIQKCMEIQPDTDIVDSVEYLAQNEVEEFATNVSKFTEAIFNRIDSKSSGNLKELEN 392

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
           ++  ++K     I   + +    + +++R                            K  
Sbjct: 393 QIIENIKKFDEQITYWQEKTKLEEQLKNR-------EKERKKSQNIIDTFTDEDYLDKRE 445

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
             +    +L+  K SK+  L     L  ++N      E  + + +    +    +L   +
Sbjct: 446 KLQENHKALIDLKQSKEVVLTFVEKLKRVVNF-----ESKENMEEKNSYDKVYNQLKQNI 500

Query: 523 ---FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
                +  +   F  ++ +    E     L +++   +++ G+     + NI D+ +   
Sbjct: 501 CKELEEIDKNGCFDSDDKNIEKLEVKQQTLCQEIGEFLKEKGVI----DENIGDLERANC 556

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           Q   + K    L R+ EEI  +I   + +G  +      + + E   +I+
Sbjct: 557 QLADIEKEITDLKRKIEEITNKIKGFSWEGIDKDIENFENQIEEKLKEIN 606


>gi|290999839|ref|XP_002682487.1| structural maintenance of chromosome 1 [Naegleria gruberi]
 gi|284096114|gb|EFC49743.1| structural maintenance of chromosome 1 [Naegleria gruberi]
          Length = 1214

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 84/228 (36%), Gaps = 10/228 (4%)

Query: 412  INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
            + +I+D + +   ++   D+ +  F+  I+  +      KK           + + +   
Sbjct: 793  VKNIRDYENKKKKAEEHADKERSRFETMISRLTNQLELIKKRDITTSLDRLEKDVEKEEK 852

Query: 472  VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
               +   K    E  L+    +    L+E     + +     E+ +L   L S + E   
Sbjct: 853  TLSEKKDKCKKLETELISIEKDFKKALEEMKSSQSSVDDKTTEMNELKKILQSVYDE--- 909

Query: 532  FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                ++ +++  +     ++QL  + ++  +     E  +  ++   ++  +L + F  L
Sbjct: 910  --LIKLAKQITAK--ENQIEQLRNRRQEMFMKCKLEEIELPSIKGKLKETSSLSQEFVTL 965

Query: 592  SRQKEEIEKQIAQVTAKGEAEKTAILI-SILHEVHIQIHQIESQEAMI 638
                  IEK+   +    E E       + L E+  +I ++    A++
Sbjct: 966  D--FSSIEKEKRNLKDIKEYEAIEKDFENKLLELQEEIERLAPTTAIV 1011


>gi|198458447|ref|XP_001361047.2| GA17478 [Drosophila pseudoobscura pseudoobscura]
 gi|198136346|gb|EAL25623.2| GA17478 [Drosophila pseudoobscura pseudoobscura]
          Length = 1476

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 26/280 (9%), Positives = 81/280 (28%), Gaps = 19/280 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                R +      +L ++         +     +           +   K     ++++ 
Sbjct: 1070 ADVERLHEANDALQLAMDQQSQRLEELQETLAQKDRQLEITVDSTQKLAKYEEIQVENEY 1129

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            L  +  Q          +  + E+       K                 + + + +    
Sbjct: 1130 LHKHTKQ---------LEHELAENGELKEKLKSLQCELYVLQEQVEHHATQVTEKECQSA 1180

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             +  EA  L   +   A+  E  ++     +   +   + + L       +    E    
Sbjct: 1181 TAKAEADQLKAALEEQAL--ELTRQREHASFVTEQSDAVQTELLQTQQHLQERQSELAKA 1238

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            +  +      + +L ++V        ++ +   D          L      L R+ E+++
Sbjct: 1239 QEEQISLQAAIAELHKEVASLKEQPVSSASAATDADS-------LRSLNEQLQRELEDLK 1291

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             +     +    ++   L +   ++  +I+++E+  A I+
Sbjct: 1292 HKSNGAES-NMQQEIEELQANNQQMAERINELETLRAGIQ 1330


>gi|194377728|dbj|BAG63227.1| unnamed protein product [Homo sapiens]
          Length = 686

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 104/304 (34%), Gaps = 25/304 (8%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D             + ++  + 
Sbjct: 227 DDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQ 286

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      +R +++ L +  +          ++  +    +   +   +            
Sbjct: 287 KLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSE 346

Query: 481 SLREAALLLTLIN----HPAILQEQYQELAD---IRYDNNELQ--KLWSFLFSDFVEQKY 531
           S R   L   +      H A+L+E+ + +     ++  N EL+  ++     +       
Sbjct: 347 SKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTDASAT 406

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALA------- 583
              E +   +    + E+  +L  + +   L    +E   I ++++  +Q          
Sbjct: 407 KSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELET 466

Query: 584 ----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQE 635
                 +R R L +Q E+++K + +  +K E E ++ L   L     ++     +++ ++
Sbjct: 467 EQRLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQ 526

Query: 636 AMIE 639
            +IE
Sbjct: 527 ELIE 530


>gi|194748761|ref|XP_001956813.1| GF10119 [Drosophila ananassae]
 gi|190624095|gb|EDV39619.1| GF10119 [Drosophila ananassae]
          Length = 1575

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 23/237 (9%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               Q  ++   +  +             +     R +    +   +        S+   
Sbjct: 291 DKLRQESQEWFTEAKRAAAYRDEVDILRERAERADRLEIEVQKYREKLGDSDFYKSRVEE 350

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD------FVEQKYFLPE 535
           LRE      L+    +L+   ++L   R  +     L S +            ++     
Sbjct: 351 LREDN--RVLLESKEMLE---EQLQRYRKRSEHAISLESEIIKYKQKLNDMALERDVDRS 405

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS--- 592
           ++ + L E    +L+ +     ++     +  E +         + L    + R L    
Sbjct: 406 KLEELLEENAQLQLVAKNLNTTQELDKSFSENEDDCNSGDNSLSEQLTNNAQTRALKLEL 465

Query: 593 --RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE-------SQEAMIEG 640
             R+     +Q+ + +      K   L     +  ++I Q++        Q A +EG
Sbjct: 466 ENRRLTAALEQLKENSFHESTSKMLELEKEKKKQSLKIEQMQENIQRLTQQNAELEG 522


>gi|156554705|ref|XP_001604907.1| PREDICTED: similar to dynein, axonemal, heavy chain 2 [Nasonia
            vitripennis]
          Length = 4490

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 78/256 (30%), Gaps = 13/256 (5%)

Query: 384  MLWKRETENRSFNTPDERAELE---IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                RE + ++++  D               I  +K+  +R  +   +   +   F +  
Sbjct: 1327 TRLSRELKEKNWSIVDSTRSRVDNFRRTLPLIIDLKNPAMRDRHWTKVMQSMGTDFDQKS 1386

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
             E +       +     ++           L      K  S    A+ L ++ +      
Sbjct: 1387 DEFTLDAIAAMQMHNFAEEIADISNSATMELAIETGLKNISEIWKAMPLIMVPYKENGIY 1446

Query: 501  QYQELADIRYDNNELQKLWSFLFS-DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
            + + + DI     E Q   S + S  FV+      +   + L   G  E+L+        
Sbjct: 1447 RLKTVDDIMQALEEHQVQLSAMKSTKFVDAFAAEVDYWERALSTVG--EILE--MVLSVQ 1502

Query: 560  AGLWSATTEANIVDVRQGYQQALALYKRF----RLLSRQKEEIEKQIAQ-VTAKGEAEKT 614
                      +  D+R+   Q    + +     + ++ +    +  +   +   G  +  
Sbjct: 1503 KSYMYLDNIFSAEDIRKQLPQETDDFDKLTASWKEITWRMASSKLALQATLEPPGLLDTL 1562

Query: 615  AILISILHEVHIQIHQ 630
              L + L  +  ++ Q
Sbjct: 1563 NELNNKLEAIQRELEQ 1578


>gi|156538593|ref|XP_001607521.1| PREDICTED: similar to CG11199-PA [Nasonia vitripennis]
          Length = 1187

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 19/302 (6%)

Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
                    L +   DP            +  + +    +    +R  E  S     E  
Sbjct: 220 QKEKYACVRLSNGALDPSDQDSAARVIELQASLDKQSVELSTWQRRVAEMSSRVAELEET 279

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
             +           + KL+    + +  +  Q  +    E        +  + H  ++  
Sbjct: 280 LSKTQKDFLKAQDANVKLQRDLRENLAQKEDQEQRIATLEKRSLNAQREAISLHDLKEKL 339

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
            Q L   +       +K +  +A L         + +++ Q+ A +     +L++    L
Sbjct: 340 EQELQHKTAQLKFQEEKIAALQAKL--------ELTEQELQQFAKLPEMEEQLKQRMEAL 391

Query: 523 FSDFVEQKYFL--PEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                         + +  +L E       L ++L          S+T +  + +  +  
Sbjct: 392 TQAQERHGSAEDRIQRLETQLEEKTAEVIRLNQRLKMNEEHNTRLSSTVDKLLSESNERL 451

Query: 579 QQALALYKRFRLLSRQKE-----EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           Q  + L +R   L  +       E  +++A+     +AE    L     E+     Q+  
Sbjct: 452 Q--VHLKERMHALEEKNALTQELEKMRKVAEDLQNEKAEIMKELGKARLEIDNVKRQMLQ 509

Query: 634 QE 635
           QE
Sbjct: 510 QE 511



 Score = 41.0 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 69/231 (29%), Gaps = 28/231 (12%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNAR-HRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            +  R+ +L +        + +    N +  RD +    +          L K+    + 
Sbjct: 268 EMSSRVAELEETLSKTQKDFLKAQDANVKLQRDLRENLAQKEDQEQRIATLEKRSLNAQR 327

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             +           +  ++L      +   Q K      +    +     +E+ Q     
Sbjct: 328 EAISL--------HDLKEKLEQ-ELQHKTAQLKFQEEKIAALQAKLELTEQELQQFAKLP 378

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ----ALALYKRFRLLSRQKEEIEK 600
              E LKQ    +  A     + E  I  +    ++     + L +R ++       +  
Sbjct: 379 EMEEQLKQRMEALTQAQERHGSAEDRIQRLETQLEEKTAEVIRLNQRLKMNEEHNTRLSS 438

Query: 601 QIAQVTAKGEA-------------EKTAILISILHEVHIQIHQIESQEAMI 638
            + ++ ++                E+   L   L ++      +++++A I
Sbjct: 439 TVDKLLSESNERLQVHLKERMHALEEKNALTQELEKMRKVAEDLQNEKAEI 489


>gi|332867881|ref|XP_003318741.1| PREDICTED: protein CASP isoform 2 [Pan troglodytes]
          Length = 662

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 98/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 85  DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 144

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 145 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 204

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 205 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 264

Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 265 IQKAPDMEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 324

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 325 QLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 368


>gi|312216554|emb|CBX96504.1| predicted protein [Leptosphaeria maculans]
          Length = 750

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/293 (9%), Positives = 88/293 (30%), Gaps = 29/293 (9%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI---------HLKNCINH 414
           +            ++L      + R  E       +++  +           + +     
Sbjct: 273 QDAKSDGIRDRFTKALLAPLKTFSRLNEMNWQTALNQKQNIIAVLQAEVGGLNGQASWLV 332

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
            +++K R         R +    +  ++   + +  + +               +     
Sbjct: 333 TQNEKGREDLKTEALTRKRMCGSECQSKLEKFQKDLRASREMEAVLTERLSTAITERDSA 392

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWSFLFSDFVEQKYFL 533
               +  L E A   T + +  +  +  +  L +  +     +K+   L S   EQ+  +
Sbjct: 393 FAVHQHKLAEEAAQKTRLEN-ELAAKASELSLQENTFQTKYREKMNEKLASLKQEQERAV 451

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                 ++ ++ +   +     +        +        ++Q  ++ + L      L +
Sbjct: 452 ------QIQKQKYEAQIDIAHSRAPLYAEAESKLSVLERQIKQLVKEKVDLNMAKATLEK 505

Query: 594 QKEEIEKQIAQVTAKGEA-EKTAILISILH-----------EVHIQIHQIESQ 634
           Q  +I+ +  Q+ +  +A E+       L            E+  Q+  ++++
Sbjct: 506 QLHDIKARGKQLQSFEDAYEQVKREFDELQSTYNDVEVERDELKQQLSALKNE 558


>gi|303235681|ref|ZP_07322288.1| Toprim domain protein [Prevotella disiens FB035-09AN]
 gi|302484128|gb|EFL47116.1| Toprim domain protein [Prevotella disiens FB035-09AN]
          Length = 687

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 74/251 (29%), Gaps = 5/251 (1%)

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + D ++++E         L    +++ H       +      + +           + + 
Sbjct: 82  RKDFVKVLETINR--DLQLNICIERKEHSNPHTMMMKPCKPTLVQPPNQLKKMEGKKWYK 139

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             +     K ++       D         ++   +   S++G+    G     +     Y
Sbjct: 140 LIEQSFNVKELDYWEQYGIDTKTLQRFHVKSLARYESVSNQGKPFTLGST--HEDPMFAY 197

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
                  ++     L   +G               +    + +  G  DVLSL   G   
Sbjct: 198 SMGKFVKVYRPKSKLRFLYGGEKVNDYVFGFQQLPSKGDVVFITGGEKDVLSLSAHGFNA 257

Query: 294 VVSSL-GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           +  +     + E  +  L      I++ +D D+ G+R A +  D +  + +    +    
Sbjct: 258 ICFNSETAQIPENIIEGLQLRFRHIIILYDSDETGIREAKRQTDALAQYKVLSLTLPLQG 317

Query: 353 LSRGEDPDSFI 363
               +D   F 
Sbjct: 318 GKSEKDISDFF 328


>gi|297664779|ref|XP_002810803.1| PREDICTED: protein Hook homolog 1-like isoform 2 [Pongo abelii]
          Length = 686

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 104/304 (34%), Gaps = 25/304 (8%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D             + ++  + 
Sbjct: 227 DDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQ 286

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      +R +++ L +  +          ++  +    +   +   +            
Sbjct: 287 KLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSE 346

Query: 481 SLREAALLLTLIN----HPAILQEQYQELAD---IRYDNNELQ--KLWSFLFSDFVEQKY 531
           S R   L   +      H A+L+E+ + +     ++  N EL+  ++     +       
Sbjct: 347 SKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTDASAT 406

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALA------- 583
              E +   +    + E+  +L  + +   L    +E   I ++++  +Q          
Sbjct: 407 KSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELET 466

Query: 584 ----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQE 635
                 +R R L +Q E+++K + +  +K E E ++ L   L     ++     +++ ++
Sbjct: 467 EQRLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQ 526

Query: 636 AMIE 639
            +IE
Sbjct: 527 ELIE 530


>gi|294616282|ref|ZP_06696075.1| hypothetical protein EfmE1636_2340 [Enterococcus faecium E1636]
 gi|291590796|gb|EFF22512.1| hypothetical protein EfmE1636_2340 [Enterococcus faecium E1636]
          Length = 522

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           ++++  ++     + ++  +L   L +   E    +  +  +R  +    ++L +L  + 
Sbjct: 37  IKKEADKVTASHKEKDKASQLIDKLENGEEEISEPVDPKERERQDQENLEKILDELATEA 96

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFR----------LLSRQKEEIEKQIAQVTA 607
                      A   D +    +      +                Q++ +E +I ++ A
Sbjct: 97  NKTSARLDEVNAQFADNKAARNEKQEALMQLNTKEELGELTEEELAQRQALEAEIKELEA 156

Query: 608 KGEA--EKTAILISILHEVHI 626
            G+   E+   L + L ++  
Sbjct: 157 SGDTLLEEQLKLEAELKDIRK 177


>gi|242067763|ref|XP_002449158.1| hypothetical protein SORBIDRAFT_05g005860 [Sorghum bicolor]
 gi|241935001|gb|EES08146.1| hypothetical protein SORBIDRAFT_05g005860 [Sorghum bicolor]
          Length = 985

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 85/291 (29%), Gaps = 16/291 (5%)

Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
            W       +  DG    L   Y    L +      + +N   L +G DP          
Sbjct: 167 CWNRLCTRFIFSDG-TDDLAKGYVMKQLAISFWGYRHDMNKKWLQKGRDPTKRYPITEAQ 225

Query: 370 --AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
              F  +              E   R+                      D K R  +  A
Sbjct: 226 WARFRLMRESDEAKAKSKAASELAKRNKYHHHLGTGGYKTKIPKWRAEDDAKRREGHL-A 284

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           + D + +    ++       +  + +     ++   + L  S+L K    K  S RE  +
Sbjct: 285 LTDIVPERSANWLRARKANTKSDEMSCPDEIREVADKVLEASNLEKKGAFK--SQRERDI 342

Query: 488 LLTLI---NHPAILQEQYQELA-DIRYDNNE------LQKLWSFLFSDFVEQKYFLPEEI 537
           L   +    HP  ++     ++    + +          +    +   F +Q      ++
Sbjct: 343 LTHALGNPEHPGRVRGFSSRISWKEGFGDEWKGMYKKRDRHKEEMKDFFEQQAAKKFRDM 402

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            +        E++K+++    +AG      +    +  +   QA+  + ++
Sbjct: 403 MEDFFTNLDAEVMKRVEVLTVEAGYEDDFIDIPTSEGIEKLGQAINNFIQW 453


>gi|240278303|gb|EER41810.1| p150 dynactin NUDM [Ajellomyces capsulatus H143]
          Length = 1208

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 78/256 (30%), Gaps = 35/256 (13%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +  L+    + ++ +L+ + +K + +           +     +   Q+L      + + 
Sbjct: 287 NPVLKE--VEDLKTKLRVMEKKRVEDREKLKSLETLRSERDKFEVIIQKLQTKYQPQQQE 344

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +   +    +  +     +  E    +     D    +++   + ++F   K    E 
Sbjct: 345 ITQLRKQLKDAMARVEEAERLQAEHESIVEMATLDREMAEEMCEAIKAEFEALKEKSEEL 404

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY--------QQALALYKRF 588
             +    R   + L Q+      +       E     +R+          QQ   L  + 
Sbjct: 405 ELEVEVLREENQELGQVMSPEEKSSQGWLQMERTNERLREALIRLRDMTQQQETDLRNQI 464

Query: 589 RLLSRQKEE------------------------IEKQIAQVTAKGEAEKTAILISILHEV 624
           + L  + E+                        +++Q+  + A+   E+ A       E 
Sbjct: 465 KELEGELEDFAAIKANYEIAKEQLLITEANMEDLKQQVEALGAEDMIEELAEKNMQYQEQ 524

Query: 625 HIQIHQ-IESQEAMIE 639
             ++   IE  E++ E
Sbjct: 525 VNELKAVIEDLESLKE 540


>gi|326677656|ref|XP_001332564.4| PREDICTED: outer dense fiber protein 2 [Danio rerio]
          Length = 831

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 90/259 (34%), Gaps = 26/259 (10%)

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY--YYSQAIRDRLQQLFQKYITEHS 444
            +    ++    DE A       +    ++D+  +      + ++ RL +L         
Sbjct: 553 YKAQNQKTRAEADEFAARLQMASSEAQAVRDELDQEIQQVRKQLQGRLSELEPLPEALRH 612

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
              +  + + + R  +  +  L  S + ++ K  ++ SL E      ++ H  +L ++  
Sbjct: 613 AELQLQEAHEKERLLERRNTELGTSLTELRIKAEQQGSLAE------MLRHKNMLLQEE- 665

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-HQRLCERGFGELLKQLDRQVRDAGL 562
                   N +LQ     L     E      + I      E        +L+ + R+  +
Sbjct: 666 --------NKQLQHKMESLERKQEEANSQNRDLIQVISKREETIHSSQVRLEEKSRECSI 717

Query: 563 WSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEA------EKTA 615
            +   E  + D R+   Q       + R+   +  ++E Q+++ + +         E   
Sbjct: 718 LTKQLEEALDDARRQVTQTRERAASKERVTQSKIVDLEAQLSRTSTELNQLRRAKDEAER 777

Query: 616 ILISILHEVHIQIHQIESQ 634
              S L +V  ++ Q +S 
Sbjct: 778 RYQSRLQDVKDRLEQSDST 796


>gi|189217828|ref|NP_001121355.1| myosin, heavy chain 1, skeletal muscle, adult [Xenopus laevis]
 gi|301611457|ref|XP_002935256.1| PREDICTED: myosin-4-like [Xenopus (Silurana) tropicalis]
 gi|186695397|gb|ACC86838.1| laryngeal-specific muscle myosin heavy chain [Xenopus laevis]
          Length = 1942

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 26/267 (9%), Positives = 81/267 (30%), Gaps = 15/267 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       + +   +       + I+ +       + +  
Sbjct: 1567 IQLELNQVKSEMDKKIAEKDEEIEQLKRNNQRATDTLQTTLDSEIRSRNEALRLKKKMEG 1626

Query: 431  RLQQLFQKYITEHSGYGRYWKK-NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             L +L  +    +       K+        K    +L     ++  L ++ ++ E     
Sbjct: 1627 DLNELEIQLNQANRQAAEAQKQLRNVQTQNKDTLLQLDNKERIESDLKEQIAVLER---R 1683

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK----YFLPEEIHQRLCERG 545
            T +     L E  +  A +   +   +     L       +    +       ++  E  
Sbjct: 1684 TALQ----LAEIEEIRAALEMLDRSCKVAEQELADSSERLQLLRSHVNILTNSKKKLESD 1739

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
              +L  +++  +++A       +  I D     ++          L R K+ +E+ +  +
Sbjct: 1740 VSQLQSEVEESIQEARNTEEKAKKAITDAALMAEELKKEQDTSAHLVRMKKNLEQTVKDL 1799

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIH 629
              + +  +   L      L ++  ++ 
Sbjct: 1800 QHRLDEAEQLALKGGKKQLQKLETRVR 1826


>gi|27881866|gb|AAH44389.1| Ktn1 protein [Danio rerio]
          Length = 1189

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 80/210 (38%), Gaps = 6/210 (2%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           ++  LQ L  +   +     +  +   +  ++    + L+++SL++    +         
Sbjct: 707 LKAELQNLQAQISEKVVSVDQLQQSLQKRDEKTRTVENLLETSLIQVANKEDELKVVRNE 766

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              L      +Q+   +  +       L++L   +     + K            E    
Sbjct: 767 CEGLKQQLEAVQK---QTTEQTVSEKALEELQLKIQEKDEQIKSVEGSLQLAVNKESERK 823

Query: 548 ELLKQLDRQVR--DAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQ 604
           ++++ L +QV    A L    T+ +  D+    Q+  A L  + + + R + E+EK++ Q
Sbjct: 824 KVVEDLQQQVEVLTAELAHLKTQESNSDLSAKLQELHAQLTAKDQDVERLQRELEKEMQQ 883

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                 A  +  L++ L E   ++ +++ +
Sbjct: 884 KQQTVSAAPSQELLTALAEKDKRLSEVQEE 913



 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 33/286 (11%), Positives = 101/286 (35%), Gaps = 25/286 (8%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
            +     +  +  +        + E +N+      E A     +++  + +KD  +   +
Sbjct: 540 KHRWEDLQNYLHSA-NAEREKIQSELQNQIMVAESEMASKNKEIQSLHSSLKDTLM---F 595

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD------QKGPSQRLMQSSLVKGKLSK 478
               + ++ QL Q+         R  + + + ++       +  + ++   +L     ++
Sbjct: 596 KDQEQQKVLQLEQQVRQLLEASQRSMQPDDQLQEKVQDLLNENKTLKVQIDNLQTQLNTQ 655

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--E 536
             +      L  L+    + ++  ++  +    +   ++  + + +   E      E   
Sbjct: 656 ATTASHFEELQKLLAEKELQRKSLEDSLNAERSSGASRE--TNMQAMHNENHTLKAELQN 713

Query: 537 IHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           +  ++ E+     +L + L ++           E +++ V     +   +      L +Q
Sbjct: 714 LQAQISEKVVSVDQLQQSLQKRDEKTRTVENLLETSLIQVANKEDELKVVRNECEGLKQQ 773

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            E ++KQ  + T   +A         L E+ ++I + + Q   +EG
Sbjct: 774 LEAVQKQTTEQTVSEKA---------LEELQLKIQEKDEQIKSVEG 810


>gi|106879208|ref|NP_062198.1| myosin-4 [Rattus norvegicus]
 gi|109892759|sp|Q29RW1|MYH4_RAT RecName: Full=Myosin-4; AltName: Full=Myosin heavy chain 2b;
            Short=MyHC-2b; AltName: Full=Myosin heavy chain 4
 gi|88853790|gb|AAI13949.1| Myosin, heavy chain 4, skeletal muscle [Rattus norvegicus]
          Length = 1939

 Score = 41.0 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 85/277 (30%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  ++   +    +       +      ELE   K     ++D +      
Sbjct: 1352 EEEQEAKAELQRAMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1411

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1412 NSKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQRNFDKVLAEWKQKYEETQAEL 1471

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E   +L  ++ +N  LQ+  S L     E         
Sbjct: 1472 EASQKESRSLSTELFKVKNAYEESLDQLETLKRENKNLQQEISDLTEQIAEGGKH----- 1526

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +A++ +     +       R   +  +  +
Sbjct: 1527 ------------IHELEKIKKQIDQEKSELQASLEEAEASLEHEEGKILR---IQLELNQ 1571

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1572 VKSEIDRKIAEKDEEIDQLKRNHLRVVESMQSTLDAE 1608



 Score = 37.6 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 25/272 (9%), Positives = 83/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1565 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHLRVVESMQSTLDAEIRSRNDALRIKKKMEG 1624

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1625 DLNEM-EIQLNHANRQAAEAIRNLRNTQGMLKDTQLHLDDALRGQDDLKEQ------LAM 1677

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     ++Q + +EL          +++    L       +    +       ++     
Sbjct: 1678 VERRANLMQAEIEELRASLEQTERSRRVAEQELLDASERVQLLHTQNTSLINTKKKLETD 1737

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1738 ISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1797

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E++
Sbjct: 1798 QHRLDEAEQLALKGGKKQIQKLEARVRELENE 1829


>gi|319649991|ref|ZP_08004140.1| ClpB protein [Bacillus sp. 2_A_57_CT2]
 gi|317398172|gb|EFV78861.1| ClpB protein [Bacillus sp. 2_A_57_CT2]
          Length = 865

 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 78/213 (36%), Gaps = 11/213 (5%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           +KYI +     R +++          +  +++    + ++    ++ + A++        
Sbjct: 323 RKYIEKDPALERRFQQVLVQEPDVEDTISILRGLKERFEIHHGVNIHDRAIVAAATLSDR 382

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP--------EEIHQRLCERGFGE 548
            + +++     I   +     + + + S   E              E   ++  + G  +
Sbjct: 383 YITDRFLPDKAIDLVDEACAMIRTEIDSMPSELDEVTRRVMQLEIEEAALRKESDEGSKQ 442

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK--QIAQVT 606
            L  L +++ +    + + +A     ++G Q+     ++   + R+ EE E    + +  
Sbjct: 443 RLADLQKELAELKDQANSMKAKWQLEKEGIQKVQEKREQLEKIRRELEEAENNYDLNKA- 501

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           A+    +   L   L ++   +++ + +  + E
Sbjct: 502 AELRHGRIPSLERELKDLESAVNENQGERLLRE 534



 Score = 37.2 bits (84), Expect = 8.4,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 59/193 (30%), Gaps = 24/193 (12%)

Query: 474 GKLSKKPSLREAALLLTLINHPA------ILQEQYQELADIRYDNNELQKLWSF------ 521
            K  +K    E      L+  P       IL+   +        N   + + +       
Sbjct: 323 RKYIEKDPALERRFQQVLVQEPDVEDTISILRGLKERFEIHHGVNIHDRAIVAAATLSDR 382

Query: 522 -LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +   F+  K     +    +       +  +LD   R          A   +  +G +Q
Sbjct: 383 YITDRFLPDKAIDLVDEACAMIRTEIDSMPSELDEVTRRVMQLEIEEAALRKESDEGSKQ 442

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-----TAILISILHEVHIQIHQIESQE 635
                 R   L ++  E++ Q   + AK + EK            L ++  ++ + E+  
Sbjct: 443 ------RLADLQKELAELKDQANSMKAKWQLEKEGIQKVQEKREQLEKIRRELEEAENNY 496

Query: 636 AMIEGFGKMSGRL 648
            + +      GR+
Sbjct: 497 DLNKAAELRHGRI 509


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 55/144 (38%), Gaps = 6/144 (4%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK---Q 552
            + + Q Q        +  + +L   +     E    L E +  +     + EL      
Sbjct: 530 ELRKTQKQLYEAEEERDRAVDELRE-MKKVAQEANMRLSEALSSKRSGELYTELSAAKKS 588

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           L    R+  L     E+  +++ +     L L +R   + + K+E+   IA++T     +
Sbjct: 589 LSDATRELQLKEKGMESLRLELEKVQLVELKLAERDAAVDKLKKELN--IAKITESHTVD 646

Query: 613 KTAILISILHEVHIQIHQIESQEA 636
             +   + + E+  ++ + ++ EA
Sbjct: 647 SLSESKARIQELERELEKKKNSEA 670


>gi|269105227|ref|ZP_06157920.1| IncF plasmid conjugative transfer DNA-nicking and unwinding protein
            TraI [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268160563|gb|EEZ39063.1| IncF plasmid conjugative transfer DNA-nicking and unwinding protein
            TraI [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 1980

 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 59   KGFYYCFSCHVKGDHLSFLSALLGCSFIESV----QRLAAIAGVPLPVVDPKIEKKEKIQ 114
            +G++  ++   KG+ ++ + +    SF E+V    Q L       L   +   +  + + 
Sbjct: 1618 RGYFRDWTTGDKGNLINLIMSAKSFSFKEAVNFAEQILTEPENHNLIENEKHDKLVDTLP 1677

Query: 115  TDLIRLIEVATDFFHH 130
              +  L E A  +F  
Sbjct: 1678 KQMSELKERAMSYFEQ 1693


>gi|238063287|ref|ZP_04607996.1| chromosome segregation protein SMC [Micromonospora sp. ATCC 39149]
 gi|237885098|gb|EEP73926.1| chromosome segregation protein SMC [Micromonospora sp. ATCC 39149]
          Length = 724

 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 65/206 (31%), Gaps = 20/206 (9%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-KLSKKPSLREAALL 488
           +RL  L  +   +    GR  +   R    +   +      L       +    RE    
Sbjct: 189 NRLTDLTAELRRQLKPLGRQAEVARRAAAIQANLRDARLRLLADDLHTLRATLNRE---- 244

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              I   +  +E+ QE+      ++E+Q     L +   E    L              E
Sbjct: 245 ---IADESAARERRQEVEAE---HSEVQARLGELEAALAEDAPLLAAAQDTWYRLSALSE 298

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             + +++  R+  L   T   +     +   Q  A  +R R    Q+EE+   +      
Sbjct: 299 RFRSVEQLARE-RLRHLTATPDDERPGRDPDQLEAEAERVR---EQEEELRGALTD---- 350

Query: 609 GEAEKTAILISILHEVHIQIHQIESQ 634
            +  + A  +    E+  Q+   E +
Sbjct: 351 -DQIRLAEAVERRQELERQLAAAERE 375


>gi|212637926|ref|YP_002314446.1| Class III stress response-related ATPase, ClpC [Anoxybacillus
           flavithermus WK1]
 gi|212559406|gb|ACJ32461.1| Class III stress response-related ATPase, ClpC [Anoxybacillus
           flavithermus WK1]
          Length = 813

 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 72/216 (33%), Gaps = 16/216 (7%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWK----KNARHRDQKGPSQRLMQSSLVKGKLS-- 477
           Y     DRL+++  +     +      +      A   +    +  +++ SL +G+L   
Sbjct: 256 YRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCI 315

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +L E       I   A L+ ++Q +        E  ++   L   +           
Sbjct: 316 GATTLDEY---RKYIEKDAALERRFQPIHVGEPTVEESIQILKGLRDRYEAHHRVS---- 368

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              + +    + +K  DR + D  L     +       +   ++       + L ++ EE
Sbjct: 369 ---ISDEAIEQAVKLSDRYISDRFLPDKAIDLIDEACSKVRLRSFTTPPNLKELEQKLEE 425

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           I K+        E EK A L     ++  Q+ + + 
Sbjct: 426 IRKEKDAAVQSQEFEKAASLRDAEQKLREQLEETKR 461


>gi|166366312|ref|YP_001658585.1| hypothetical protein MAE_35710 [Microcystis aeruginosa NIES-843]
 gi|166088685|dbj|BAG03393.1| hypothetical protein MAE_35710 [Microcystis aeruginosa NIES-843]
          Length = 133

 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%)

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            I +V          Y++     +QK+++E Q +Q+  +        L   L ++  QI 
Sbjct: 19  AIEEVEAALASLKDRYRQISEAEQQKKDLEAQFSQIEPQWRENPLPELEKELVQIREQIQ 78

Query: 630 QIE 632
           ++E
Sbjct: 79  ELE 81


>gi|168027318|ref|XP_001766177.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682609|gb|EDQ69026.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 493

 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 68/218 (31%), Gaps = 8/218 (3%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            RL  +  +   E +       + A   +          +     +    P+   A  L 
Sbjct: 213 KRLDAVATETRVESTPLPSKQVEEATIAECSQARNYERTNVSSSSRELGHPNTNMAITLP 272

Query: 490 TLINH---PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            L+ +     +     Q        + ++ +L   +     E       ++ + L E   
Sbjct: 273 VLVEYYQRVDLSGAGQQARELKELISTQITQLHMAVEKMDNEFNLRQENKLAKSLMELTK 332

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI---- 602
            E ++  ++   +    +             ++Q+ +       L R+  E+E ++    
Sbjct: 333 QECMELRNQYQEEKNRVAELEAGRSKLEDDFWRQSESSKTENEQLKRRIAELEAEMITVT 392

Query: 603 -AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             Q      +     L   +H +  Q+ + ++Q A++E
Sbjct: 393 TQQREVNPASTSLRELEKQVHALEEQLKERDTQIALLE 430


>gi|169617782|ref|XP_001802305.1| hypothetical protein SNOG_12072 [Phaeosphaeria nodorum SN15]
 gi|111059364|gb|EAT80484.1| hypothetical protein SNOG_12072 [Phaeosphaeria nodorum SN15]
          Length = 1095

 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 77/236 (32%), Gaps = 22/236 (9%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R     +++ ++    +  ++E            R  D    +     + L   +     
Sbjct: 708 RERDISSLQKKIDA-QEITLSELKQLKSDLSDRTRELDTARRTISERDAELDALRDHADE 766

Query: 481 SLREAALLLTLIN-HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +  ++  L+      L+    EL   R + + LQ+L         + +      + +
Sbjct: 767 PGTQLDVMQDLVRKRDDELENLRDELNAQRSEVDRLQQLAEERLQALEDLR--DTARLEK 824

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL--------YKRFRLL 591
           +  +     LL+Q+D    +              +R+   Q+ A+         ++   L
Sbjct: 825 QDLDDELEALLEQVDETNEEKASLEEKISVLESMIREKENQSTAIQTETRAAQREQKAAL 884

Query: 592 SRQKEEIEKQIAQVTA----------KGEAEKTAILISILHEVHIQIHQIESQEAM 637
             +  ++E ++ +  +            + E+ A L   L ++   + + ESQ  +
Sbjct: 885 ENKIRDLESRMREKDSQHRKLQTDAKAAQREQQAALEKQLRDLEALLREKESQLRL 940


>gi|118386059|ref|XP_001026151.1| zinc finger protein [Tetrahymena thermophila]
 gi|89307918|gb|EAS05906.1| zinc finger protein [Tetrahymena thermophila SB210]
          Length = 1075

 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 88/228 (38%), Gaps = 14/228 (6%)

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
           L     +I+D+         I ++LQ L               +     R+++   + + 
Sbjct: 540 LTQVSTNIQDELCDGKLRLPITEKLQIL---QKRNEQLVQEKSELEKYMREREIDLKNME 596

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
                 G      +  E  LL   I   + L+E  Q+++DI       +++   + + F 
Sbjct: 597 DKFFRSGAYQSLATQTE-ELLKITIQMRSQLKEAKQQISDIE--KQRFREM-QEVLTKFK 652

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-YK 586
           ++K  L +++H+   E  +   L    R+              + D  +   + L +  +
Sbjct: 653 DEKETLLKQLHEA-REGVYKTQLGDAMRENLTQHFNYKKYTQPLEDQLEKASEILTIERE 711

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             R L ++K+++ +QI Q+  +        L + L+E   QI+ ++SQ
Sbjct: 712 HNRDLEQKKQQLNEQIIQLQKQNSD-----LQAKLNEKEQQINYLQSQ 754


>gi|73958805|ref|XP_862396.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM2
            isoform 8 [Canis familiaris]
          Length = 1936

 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 48/129 (37%), Gaps = 13/129 (10%)

Query: 510  YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATT 567
              +  L +L         E+     E++ ++L      F E +  L  Q+ +  +  A  
Sbjct: 1042 LRDPALVRLKK------EEKSRQELEKLKRKLEGEASDFHEQIADLQAQIAELKMQLAKK 1095

Query: 568  EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVH 625
            E  +          +A   +     ++  E+E  I+ +    ++E+ A   +     ++ 
Sbjct: 1096 EEELQAALGRLDDEIA---QKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLG 1152

Query: 626  IQIHQIESQ 634
             ++  ++++
Sbjct: 1153 EELEALKTE 1161


>gi|4191344|gb|AAD09753.1| golgin-84 [Homo sapiens]
 gi|56267988|gb|AAV85456.1| cell proliferation-inducing gene 31 [Homo sapiens]
 gi|119601908|gb|EAW81502.1| golgi autoantigen, golgin subfamily a, 5 [Homo sapiens]
          Length = 731

 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 78/269 (28%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK----LRYYYSQAIRDRLQ 433
           +      + K   +            LE         ++DQ     L+    Q +++RL 
Sbjct: 296 AKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTLQERLH 355

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 356 EADATLKREQESYKQMQSEFA---------ARLNKVEMERQNLAEAITLAER-------K 399

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    +   +    ++     L+     L     +        E++   L E    E L 
Sbjct: 400 YSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLD 459

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 460 SSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHD 519

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   IE
Sbjct: 520 QIAGQKASK--QELETELERLKQEFHYIE 546


>gi|297300244|ref|XP_002805557.1| PREDICTED: plectin-1 isoform 2 [Macaca mulatta]
          Length = 4550

 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 83/274 (30%), Gaps = 19/274 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       +RE    +    +  AEL          +  + 
Sbjct: 1716 QELIRLRAETEQGEQQRQLLEEELARLQREAAAATQKRQELEAELAKVRAEMEVLLASKA 1775

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1776 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1835

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------FLFSDFVEQKYFL 533
              L E   L  +     +  E    L +   +N  L++L            +   Q    
Sbjct: 1836 RVLAEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKAD 1893

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             EE   +L +    EL                  E  +   RQ  ++ LAL   F   + 
Sbjct: 1894 IEERLAQLRKASDSEL-----------ERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 1942

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             K E+E ++ ++ +  E    +   + L     +
Sbjct: 1943 GKAELELELGRIRSNAEDTLRSKEQAELEAARQR 1976



 Score = 40.6 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 55/193 (28%), Gaps = 23/193 (11%)

Query: 457  RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
            R ++     + +      +  ++ +  E  L    +          +        + ELQ
Sbjct: 2161 RQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ-------LEETDHQKNLLDEELQ 2213

Query: 517  KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT--------- 567
            +L +       ++     E    R+      +L  +++ + R   L              
Sbjct: 2214 RLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEA 2273

Query: 568  ----EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
                +      R       A   R      L++Q+   EK + +     +        + 
Sbjct: 2274 EKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAE 2333

Query: 621  LHEVHIQIHQIES 633
            L +   ++ Q ++
Sbjct: 2334 LLQQQKELAQEQA 2346



 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 80/226 (35%), Gaps = 14/226 (6%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1332 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1391

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            ++    +  +   ++       +  Q+   I+ +                + +      +
Sbjct: 1392 REAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQXXXXXXXXXXGQARQAEAAERSRL 1451

Query: 538  HQRLCERGFGELLKQLDRQ----VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                  R     L+  +RQ      +     A  E      RQ  ++A  L ++ +  S+
Sbjct: 1452 RIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDESQ 1511

Query: 594  QKEEIEKQIA---QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +K + E ++A   +  A+   EK    +  L E+     +++++EA
Sbjct: 1512 RKRQAEAELALRVKAEAEAAREK-QRALQALEEL-----RLQAEEA 1551



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1681 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1740

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1741 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1778


>gi|108763235|ref|YP_631200.1| adventurous gliding motility protein AglZ [Myxococcus xanthus DK
           1622]
 gi|122981103|sp|Q1D823|AGLZ_MYXXD RecName: Full=Adventurous-gliding motility protein Z
 gi|108467115|gb|ABF92300.1| adventurous gliding motility protein AglZ [Myxococcus xanthus DK
           1622]
          Length = 1395

 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 88/242 (36%), Gaps = 24/242 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL--MQSSLVKGKLSKKPSL 482
            QA+++RLQQ  Q+  T   G      +   H  Q          +   ++ KLS++ + 
Sbjct: 407 IQALQERLQQTEQERDTTVRGLEARAARAEEHGTQADAEIHRLNAERDALEAKLSQQVAD 466

Query: 483 REAALLLTLINHPAILQEQYQELADI----RYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            EA L  T+     +  ++  + A++       + +L  L   L       ++   E   
Sbjct: 467 LEADLARTMGERDQLRLDKDAQEAELTQRIEERDAKLGTLERELSETIARNEHTEAEL-- 524

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ--------ALALYKRFRL 590
                    + L+++     +        E    ++    Q            L  R + 
Sbjct: 525 ----NANIQQQLERIGELEGEVEAVKTHLEDRENELTAELQALGQAKDELETDLNDRLQA 580

Query: 591 LSRQKEEIEKQIAQVTAK---GEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK-MSG 646
           LS+ K+ +E  +++   +    +AE  A L   +  +  Q+ + + Q    +  G+ +S 
Sbjct: 581 LSQAKDALEADLSRQLEELRSAKAELEADLTGQIQALTSQLEETQRQLDDSQRTGEQLSA 640

Query: 647 RL 648
           R+
Sbjct: 641 RV 642



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 81/262 (30%), Gaps = 37/262 (14%)

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              +      +D+       Q+I DR  +L  +         R           +     
Sbjct: 163 KRERRSAMTEEDRAFLDRTFQSIADRKAELLAESRQLKRPPPRRELMGTPEGKIQILRDE 222

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF---- 521
           L        +LS+  ++RE  LL         + E+  EL  ++   ++L + ++     
Sbjct: 223 LKTREAQLARLSEIWNVRERELLSG----EDRIHEKDVELQGLKMQVDDLLRRFNEAQQA 278

Query: 522 -LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +  +           + +   E+   E++   ++ +       +  E  +       + 
Sbjct: 279 TIQKEREHGATVDDLLLQKFSAEKDLIEVVASKEKDINLLRREVSRAEEELSRRAGELEH 338

Query: 581 ALALYKRFR------LLSRQKEEIEKQ---------IAQVTAKGEA-------------E 612
               Y +         L  + +E + Q         IA++T +G+              +
Sbjct: 339 GRNEYDKLEKHLGVVTLEFEVKEQKLQDTVLANEGEIARLTKRGDDFEAELNRTISERDQ 398

Query: 613 KTAILISILHEVHIQIHQIESQ 634
           + A L   +  +  ++ Q E +
Sbjct: 399 RFAELDGEIQALQERLQQTEQE 420


>gi|40074272|gb|AAR39422.1| adventurous gliding protein Z [Myxococcus xanthus]
          Length = 1395

 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 88/242 (36%), Gaps = 24/242 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL--MQSSLVKGKLSKKPSL 482
            QA+++RLQQ  Q+  T   G      +   H  Q          +   ++ KLS++ + 
Sbjct: 407 IQALQERLQQTEQERDTTVRGLEARAARAEEHGTQADAEIHRLNAERDALEAKLSQQVAD 466

Query: 483 REAALLLTLINHPAILQEQYQELADI----RYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            EA L  T+     +  ++  + A++       + +L  L   L       ++   E   
Sbjct: 467 LEADLARTMGERDQLRLDKDAQEAELTQRIEERDAKLGTLERELSETIARNEHTEAEL-- 524

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ--------ALALYKRFRL 590
                    + L+++     +        E    ++    Q            L  R + 
Sbjct: 525 ----NANIQQQLERIGELEGEVEAVKTHLEDRENELTAELQALGQAKDELETDLNDRLQA 580

Query: 591 LSRQKEEIEKQIAQVTAK---GEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK-MSG 646
           LS+ K+ +E  +++   +    +AE  A L   +  +  Q+ + + Q    +  G+ +S 
Sbjct: 581 LSQAKDALEADLSRQLEELRSAKAELEADLTGQIQALTSQLEETQRQLDDSQRTGEQLSA 640

Query: 647 RL 648
           R+
Sbjct: 641 RV 642



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 81/262 (30%), Gaps = 37/262 (14%)

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              +      +D+       Q+I DR  +L  +         R           +     
Sbjct: 163 KRERRSAMTEEDRAFLDRTFQSIADRKAELLAESRQLKRPPPRRELMGTPEGKIQILRDE 222

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF---- 521
           L        +LS+  ++RE  LL         + E+  EL  ++   ++L + ++     
Sbjct: 223 LKTREAQLARLSEIWNVRERELLSG----EDRIHEKDVELQGLKMQVDDLLRRFNEAQQA 278

Query: 522 -LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +  +           + +   E+   E++   ++ +       +  E  +       + 
Sbjct: 279 TIQKEREHGATVDDLLLQKFSAEKDLIEVVASKEKDINLLRREVSRAEEELSRRAGELEH 338

Query: 581 ALALYKRFR------LLSRQKEEIEKQ---------IAQVTAKGEA-------------E 612
               Y +         L  + +E + Q         IA++T +G+              +
Sbjct: 339 GRNEYDKLEKHLGVVTLEFEVKEQKLQDTVLANEGEIARLTKRGDDFEAELNRTISERDQ 398

Query: 613 KTAILISILHEVHIQIHQIESQ 634
           + A L   +  +  ++ Q E +
Sbjct: 399 RFAELDGEIQALQERLQQTEQE 420


>gi|58038278|ref|YP_190247.1| hypothetical protein GOX2525 [Gluconobacter oxydans 621H]
 gi|58000692|gb|AAW59591.1| hypothetical protein GOX2525 [Gluconobacter oxydans 621H]
          Length = 323

 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 83/306 (27%), Gaps = 53/306 (17%)

Query: 66  SCHVKGDHLSFLSALL-GCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124
               KGD  S +  L  G  F ++ + L  + G+      PK  +  + +          
Sbjct: 67  GSDEKGDVFSLIQRLTPGLKFRDACRELGQLVGIE-----PKGAEYVRERQA-------- 113

Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184
                   K         +  ++          +L         L E      +   + I
Sbjct: 114 --------KTPDGAPAERWQGKK----------ELKSGTKVWAYLTEERCLPEWVLRRAI 155

Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244
             G + DG ++A              R + G +     R                 L   
Sbjct: 156 MTGCIRDGYHAAWFCH----------RDAAGAICGAELRGPDTKGIC---------LSGT 196

Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
            K L+ F   L    + +        +     ++      +L  +    +      ALT 
Sbjct: 197 VKTLFRFQPGLGRTVRRLVVSESAIDALSYAALDSERTRETLYCSTAGGMGPETVEALTA 256

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
               +    +  +V   D DD G R A +  +L     +    +  +     +D +  ++
Sbjct: 257 ELAEMAKDPAAVLVAATDHDDAGNRYAARLAELGREAGV--RVIRRIPHGGCKDFNDALK 314

Query: 365 CYGKTA 370
                A
Sbjct: 315 TVVAAA 320


>gi|67189167|ref|NP_034985.2| myosin-4 [Mus musculus]
 gi|73921192|sp|Q5SX39|MYH4_MOUSE RecName: Full=Myosin-4; AltName: Full=Myosin heavy chain 2b;
            Short=MyHC-2b; AltName: Full=Myosin heavy chain 4
 gi|56206252|emb|CAI24988.1| myosin, heavy polypeptide 4, skeletal muscle [Mus musculus]
 gi|223461264|gb|AAI41363.1| Myosin, heavy polypeptide 4, skeletal muscle [Mus musculus]
          Length = 1939

 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 85/277 (30%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  ++   +    +       +      ELE   K     ++D +      
Sbjct: 1352 EEEQEAKAELQRAMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1411

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1412 NSKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQRNFDKVLAEWKQKYEETQAEL 1471

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E   +L  ++ +N  LQ+  S L     E         
Sbjct: 1472 EASQKESRSLSTELFKVKNAYEESLDQLETLKRENKNLQQEISDLTEQIAEGGKH----- 1526

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +A++ +     +       R   +  +  +
Sbjct: 1527 ------------IHELEKIKKQIDQEKSELQASLEEAEASLEHEEGKILR---IQLELNQ 1571

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1572 VKSEIDRKIAEKDEEIDQLKRNHLRVVESMQSTLDAE 1608



 Score = 37.2 bits (84), Expect = 7.9,   Method: Composition-based stats.
 Identities = 25/272 (9%), Positives = 83/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1565 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHLRVVESMQSTLDAEIRSRNDALRIKKKMEG 1624

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1625 DLNEM-EIQLNHANRQAAEAIRNLRNTQGMLKDTQLHLDDALRGQDDLKEQ------LAM 1677

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     ++Q + +EL          +++    L       +    +       ++     
Sbjct: 1678 VERRANLMQAEIEELRASLEQTERSRRVAEQELLDASERVQLLHTQNTSLINTKKKLETD 1737

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1738 ISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1797

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E++
Sbjct: 1798 QHRLDEAEQLALKGGKKQIQKLEARVRELENE 1829


>gi|47219477|emb|CAG10841.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1143

 Score = 41.0 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           RL +      L++L   +      + +++++  ++++  +QA A   + R   R+  E  
Sbjct: 520 RLEKEDGERKLQELQDSLLAMKKQAPSSDSSARELQEALKQAEADLDKQR---RELNEKR 576

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ-EAMIEGFGKMSGR 647
           + + ++      EK A L+S +  +  +  + +++ E  +E   ++S R
Sbjct: 577 EALQRLKQA-SGEKEAELLSEVKRLKERSSKDKAELEKALEKAKEVSVR 624


>gi|332232028|ref|XP_003265201.1| PREDICTED: protein Hook homolog 1 isoform 3 [Nomascus leucogenys]
          Length = 686

 Score = 41.0 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 99/304 (32%), Gaps = 25/304 (8%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D             + ++  + 
Sbjct: 227 DDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQ 286

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      +R +++ L +  +          ++  +    +   +   +            
Sbjct: 287 KLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSE 346

Query: 481 SLREAALLLTLIN----HPAILQEQYQELADIRYDNNELQKLW-----SFLFSDFVEQKY 531
           S R   L   +      H A+L+E+ + +          ++L          +       
Sbjct: 347 SKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTDASAT 406

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALA------- 583
              E +   +    + E+  +L  + +   L    +E   I ++++  +Q          
Sbjct: 407 KSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELET 466

Query: 584 ----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQE 635
                 +R R L +Q E+++K + +  +K E E ++ L   L     ++     +++ ++
Sbjct: 467 EQRLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQ 526

Query: 636 AMIE 639
            +IE
Sbjct: 527 ELIE 530


>gi|326428694|gb|EGD74264.1| hypothetical protein PTSG_06273 [Salpingoeca sp. ATCC 50818]
          Length = 560

 Score = 41.0 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 71/222 (31%), Gaps = 20/222 (9%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +    +   +Q + DRL   +         Y R  K+N + +D+             +  
Sbjct: 16  QSGPWKAAIAQQL-DRLSHRYDGIAPLFDAYTRLLKQNKQLKDEN------------RVI 62

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYD--NNELQKLWSFLFSDFVEQKYFL 533
             +    +E  +     N  +  + +   +  + ++  +    +    L   + E+    
Sbjct: 63  KDELDEAKEEMIARRRSNTRSGRKAKDNVVDAVEFEKLHTRYSEQCEELLRVYKERAQVN 122

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             E+  R   +     + +L +++  A     +    I  +     Q          L  
Sbjct: 123 HSELLARQRAQDLEAEMTELKQRLERAEEAKGSHLELIETLNSMIDQ---RDMSISSLKD 179

Query: 594 QKEEIEKQ--IAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +   +  Q  + +   +   ++   L+S + E+  Q   +++
Sbjct: 180 ELSALSLQYTLVEEKRQEVEQERNELLSRMLEMKQQQADMQN 221


>gi|308159539|gb|EFO62066.1| Axoneme-associated protein GASP-180 [Giardia lamblia P15]
          Length = 1039

 Score = 41.0 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 43/395 (10%), Positives = 108/395 (27%), Gaps = 16/395 (4%)

Query: 254 ALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKL 313
           A   LQ  I +           +V    +V  L     +   + L    T   +      
Sbjct: 571 AKRKLQAEIDRLKELADVREEEVVGLRKEVGDLTDECEKLRNAFLSAPTTRTVIDEASSN 630

Query: 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
             +I    +  D          +           +   L+ +  DP+   +   K     
Sbjct: 631 DAKIAHLLEQLDDASVRIRDLENAHSGKDEVIKTLRKQLVGKATDPEMANQLLRKEEELG 690

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
                L            +   +  D +  L+    +    ++D   R    + +RD L+
Sbjct: 691 DFKARLADAIKEISDLRSSAR-DAEDLQQALDKATTDYAKLMEDFDEREQEIKRLRDELR 749

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
                   ++    R  +      D       +              ++ E        +
Sbjct: 750 DAEDADELKNQILCRDAEITDLKNDLAEKEDTITSLQNQLSVQPTTSTIVEEG-----GS 804

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                    +  ++ ++    L+           E +    E    RL        L  L
Sbjct: 805 DMEDAATIKELQSENQFLREALESERQTNSEKDKEIQGMDTELARLRLRLDESLPALDTL 864

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQAL---------ALYKRFRLLSRQKEEIEKQIAQ 604
             +V          +  IVD++    +           AL      ++++    ++++ +
Sbjct: 865 RSEVELLKSTMEDKDKEIVDLKNTLDERATDVPIETVDALNAMLEDINQELAVSKQEVER 924

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +  + + ++ ++    L E   +  +++   +MI+
Sbjct: 925 LKDQLDDKEKSMADMRLKERQKE-AELDELSSMIQ 958


>gi|306834569|ref|ZP_07467682.1| replicative DNA helicase DnaB [Streptococcus bovis ATCC 700338]
 gi|304423371|gb|EFM26524.1| replicative DNA helicase DnaB [Streptococcus bovis ATCC 700338]
          Length = 456

 Score = 41.0 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/161 (9%), Positives = 52/161 (32%), Gaps = 7/161 (4%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              + ++  +  L E ++L ++   P  L    + ++   +     + ++  + +     
Sbjct: 6   EEPELRVQPQDLLAEQSILGSIFISPDKLITVREYISPDDFYKYSHRVIFKAMITLSDRN 65

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +      +   L ++G       L      + +             + Y + +A     R
Sbjct: 66  EAIDATTVRTILDDQG------DLQNIGGLSYIVELVNSVPTSANAEYYAKIVAEKAMLR 119

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            +  +  E    +A   +    +  A     L E++ + ++
Sbjct: 120 NIISRLTETVN-LAYEGSTDSEDVIAGAEKALVEINERSNR 159


>gi|297300248|ref|XP_002805559.1| PREDICTED: plectin-1 isoform 4 [Macaca mulatta]
          Length = 4546

 Score = 41.0 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 83/274 (30%), Gaps = 19/274 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       +RE    +    +  AEL          +  + 
Sbjct: 1712 QELIRLRAETEQGEQQRQLLEEELARLQREAAAATQKRQELEAELAKVRAEMEVLLASKA 1771

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1772 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1831

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------FLFSDFVEQKYFL 533
              L E   L  +     +  E    L +   +N  L++L            +   Q    
Sbjct: 1832 RVLAEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKAD 1889

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             EE   +L +    EL                  E  +   RQ  ++ LAL   F   + 
Sbjct: 1890 IEERLAQLRKASDSEL-----------ERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 1938

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             K E+E ++ ++ +  E    +   + L     +
Sbjct: 1939 GKAELELELGRIRSNAEDTLRSKEQAELEAARQR 1972



 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 55/193 (28%), Gaps = 23/193 (11%)

Query: 457  RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
            R ++     + +      +  ++ +  E  L    +          +        + ELQ
Sbjct: 2157 RQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ-------LEETDHQKNLLDEELQ 2209

Query: 517  KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT--------- 567
            +L +       ++     E    R+      +L  +++ + R   L              
Sbjct: 2210 RLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEA 2269

Query: 568  ----EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
                +      R       A   R      L++Q+   EK + +     +        + 
Sbjct: 2270 EKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAE 2329

Query: 621  LHEVHIQIHQIES 633
            L +   ++ Q ++
Sbjct: 2330 LLQQQKELAQEQA 2342



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 80/226 (35%), Gaps = 14/226 (6%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1328 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1387

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            ++    +  +   ++       +  Q+   I+ +                + +      +
Sbjct: 1388 REAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQXXXXXXXXXXGQARQAEAAERSRL 1447

Query: 538  HQRLCERGFGELLKQLDRQ----VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                  R     L+  +RQ      +     A  E      RQ  ++A  L ++ +  S+
Sbjct: 1448 RIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDESQ 1507

Query: 594  QKEEIEKQIA---QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +K + E ++A   +  A+   EK    +  L E+     +++++EA
Sbjct: 1508 RKRQAEAELALRVKAEAEAAREK-QRALQALEEL-----RLQAEEA 1547



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1677 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1736

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1737 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1774


>gi|257882737|ref|ZP_05662390.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|294623591|ref|ZP_06702432.1| conserved hypothetical protein [Enterococcus faecium U0317]
 gi|257818395|gb|EEV45723.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|291596998|gb|EFF28208.1| conserved hypothetical protein [Enterococcus faecium U0317]
          Length = 522

 Score = 41.0 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           ++++  ++     + ++  +L   L +   E    +  +  +R  +    ++L +L  + 
Sbjct: 37  IKKEADKVTASHKEKDKASQLIDKLENGEEEISEPVDPKERERQDQENLEKILDELATEA 96

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFR----------LLSRQKEEIEKQIAQVTA 607
                      A   D +    +      +                Q++ +E +I ++ A
Sbjct: 97  NKTSARLDEVNAQFADNKAARNEKQEALMQLNTKEELGELTEEELAQRQALEAEIKELEA 156

Query: 608 KGEA--EKTAILISILHEVHI 626
            G+   E+   L + L ++  
Sbjct: 157 SGDTLLEEQLKLEAELKDIRK 177


>gi|237718495|ref|ZP_04548976.1| predicted protein [Bacteroides sp. 2_2_4]
 gi|229452202|gb|EEO57993.1| predicted protein [Bacteroides sp. 2_2_4]
          Length = 52

 Score = 41.0 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 8  IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
          I++    IP+ +         R             W C PF +EKTPSF  + S+  
Sbjct: 3  IEEAK-RIPLEDY------LRRMGFSPVRQHGDSIWYCSPFREEKTPSFKVSTSRNL 52


>gi|224013870|ref|XP_002296599.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968951|gb|EED87295.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1189

 Score = 41.0 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 86/281 (30%), Gaps = 18/281 (6%)

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEK--LIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
           F     G D  + +      A E+   +  +  L         +    +  +  A +   
Sbjct: 494 FWSWLFGFDNSNSVGDRDLEAVEEEERLRAAQELARSTLLHALQTERTSVDELEASVITL 553

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
            +N    +   + R      + DR+    +    +        ++  +   ++ P  +L+
Sbjct: 554 QRNNSAIMDVVQSRNELISELNDRVAVFEE----DKMVLKAALRQLQKEIKEEAPRTQLL 609

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDF 526
              L   +  ++    E   L   I+H     E      +   + N   ++L+  L   +
Sbjct: 610 ADELDAARERERVVREELEQLR--IDHDEECDEFDARWEEAEKEWNQTKEELY--LIGSY 665

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           V+Q             E    E  KQ      +A  W    +          ++      
Sbjct: 666 VDQLEDRLATFAIAKKEIELRE--KQCAELEAEAKAWKLEVDETKPLFEDLVKERAETNV 723

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +   L +Q +E+++QIA    + E  +         E+  +
Sbjct: 724 KMEGLLQQIDELKEQIADWEQRVEEAECRNE-----EIKSE 759


>gi|218202162|gb|EEC84589.1| hypothetical protein OsI_31400 [Oryza sativa Indica Group]
          Length = 1209

 Score = 41.0 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L   L    +E+K    + + Q+   +     L+  ++ + D  + +   + +I+     
Sbjct: 698 LREKLSKLEMEKKILDEQSLDQKDELQRLKSSLESCEKAMEDCNIQNELEKDSILSELLT 757

Query: 578 YQQALA------LYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILISILHEVHIQIH 629
            Q+ +       L K    + ++ +  + ++ +   K     ++   L S   E   +I 
Sbjct: 758 LQKEVVYLSSSSLMKEKESIRKELDRTKTKLKETENKLKNSIQEKIKLESEKAEAQREIK 817

Query: 630 QIESQEAMIE 639
           +++SQ  ++E
Sbjct: 818 KLQSQRILLE 827


>gi|121582843|ref|YP_973285.1| hypothetical protein Pnap_4260 [Polaromonas naphthalenivorans CJ2]
 gi|120596105|gb|ABM39543.1| hypothetical protein Pnap_4260 [Polaromonas naphthalenivorans CJ2]
          Length = 778

 Score = 41.0 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 71/217 (32%), Gaps = 14/217 (6%)

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            +++ +LR          L +L ++     +   R      + R       RL   +L+ 
Sbjct: 135 TVREAELRGGLVAEREQSLAELRKQVSDLETLRNRLPADMDKERQTLLAQARLDAQALMA 194

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                  +L    + L  +    + +   ++  +          L   +   F  Q    
Sbjct: 195 SAEQHAATLHGREIRLNTLE-LELDKRNERQQMNEELLQVRCASLTKEIEEGFQRQLDDK 253

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            E++ +RL +    +L  ++D+Q  +     +  +    D ++   +  AL +  R L R
Sbjct: 254 EEQLQRRLKD--LDKLHNRIDQQQSELDGLESLRDQVGDDPQRMLDELDALRQDKRALDR 311

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           + + +     +     +        + L     ++ +
Sbjct: 312 EVQAL-----RANRSEDDA------NELRSQRDRLQE 337


>gi|67521876|ref|XP_658999.1| hypothetical protein AN1395.2 [Aspergillus nidulans FGSC A4]
 gi|40746069|gb|EAA65225.1| hypothetical protein AN1395.2 [Aspergillus nidulans FGSC A4]
          Length = 691

 Score = 41.0 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 41/325 (12%), Positives = 103/325 (31%), Gaps = 28/325 (8%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP-DSFIRCYGKTAFEKLIVESLPLV 382
           D           ++       G+       SR + P    +R   +        +SL   
Sbjct: 43  DSHTPEETTNGKEIDANSTDHGHADIESDDSRAKSPILEALRSKDRFDALVRDRDSLRAE 102

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR--------YYYSQAIRDRLQQ 434
               ++  E        +   L+  L +  +  +  + +              + +RL++
Sbjct: 103 VTDMRKSLEEIQSKHRTDMQALQSKLDDAESKKEHAESQYRGLLERVNTIKAQLGERLKE 162

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
             ++     S      ++N+  +++       +     +    +   LRE     T ++ 
Sbjct: 163 DAEEISQARSRIEELEEQNSSTKEEYEAKISELSEENQRM-AKELSELRER----TNLSQ 217

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQ 552
              L+E+   L    Y  +E ++    + +   E        I + L E+     E L  
Sbjct: 218 QNWLREKDDLLEQESYLQSEFEQAKEAMHNW--EVLAMEERSIRENLGEKVIDLEEQLTT 275

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLL----SRQKEEIEKQIAQVTA 607
           L            +  A +  +++  Q+  A  K+  R L      Q E +++ + +  +
Sbjct: 276 LKDAYERTSAERDSQAAAVDGLQRALQEIQAARKQELRELVESSDAQLEGLKQSLNEAKS 335

Query: 608 KGEAEKTAILISILHEVHIQIHQIE 632
           K         +  L ++  ++ ++ 
Sbjct: 336 KES-----EAMKSLQDLQQELERVR 355


>gi|312080230|ref|XP_003142511.1| hypothetical protein LOAG_06930 [Loa loa]
 gi|307762325|gb|EFO21559.1| hypothetical protein LOAG_06930 [Loa loa]
          Length = 657

 Score = 41.0 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 88/312 (28%), Gaps = 29/312 (9%)

Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI---- 406
           V      D            ++   +E   L D +        +      +  +      
Sbjct: 303 VQKYEKLDAQISNYKAKLKEWKAQKIEVKVLEDKVTTYMKSVIALEDEQRKNGVLKTQIE 362

Query: 407 ----HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                       + D+  R   ++    +L +   +   E     +  ++          
Sbjct: 363 SLRLENSELEARLNDEIRRADKAEFEFKQLNERIDEIEKEKEHLRQERRELNEQLLLHEN 422

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
               +         S    LRE  +          L+ + + L      + E   L   L
Sbjct: 423 GSNTLSLHDETIDASLTALLRERII---------RLETEKESLLAGNITDGEKLCLKEEL 473

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            S  V+++    E    +       + LK+L+  +         ++    +     + A+
Sbjct: 474 SSLIVQKRNLETELKLAQNKADDLEKRLKELNSIIESGN--FVNSDRLTEEQTAKERMAI 531

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEA---------EKTAILISILHEVHIQIHQIES 633
            L +    L +   ++E+Q+A      +           +   L+  + +    I  +E 
Sbjct: 532 QLAQLEARLEQATHDLEQQVADKKTLNDELTSSKQQVKNEKDRLMHYMEKARRMIEDLEE 591

Query: 634 QEAMIEGFGKMS 645
           Q   +EG G +S
Sbjct: 592 QSRAVEG-GALS 602


>gi|332245964|ref|XP_003272121.1| PREDICTED: coiled-coil alpha-helical rod protein 1-like isoform 3
           [Nomascus leucogenys]
          Length = 760

 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 545 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 604

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + + + 
Sbjct: 605 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLAWRLQELERDKNLMLAT 664


>gi|327299274|ref|XP_003234330.1| dynactin [Trichophyton rubrum CBS 118892]
 gi|326463224|gb|EGD88677.1| dynactin [Trichophyton rubrum CBS 118892]
          Length = 1360

 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 26/248 (10%), Positives = 71/248 (28%), Gaps = 33/248 (13%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              ++ +L+ + +K   +           A     +   Q+L +    + +       + 
Sbjct: 306 LDDLKTKLKIMEKKRAEDREKLKMVETYRAERDKFETIIQKLREKYQPQQQEITTLRKQL 365

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                 +     +  E    L     D    +++   + +++   K    E   +    +
Sbjct: 366 KEAEYRVEEVERLQAEHESILEMAALDREMAEEVAESIKAEYEALKIRTEELELEVEVLK 425

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY--------QQALALYKRFRLLSRQKE 596
              + L Q+      +       E     +R+          QQ   L  + + L  + +
Sbjct: 426 EENDQLGQVMSPEEKSSQGWLQMERTNERLREALIRLRDMTQQQEADLKDQVKDLEEELK 485

Query: 597 E------------------------IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ-I 631
           +                        +++Q+  + A+   E+         E   ++   I
Sbjct: 486 DYNNLKAQYESTKEKLLASEANMEDLKQQVEALGAEEMIEELTEKNMQYQEEVNELKAII 545

Query: 632 ESQEAMIE 639
           E  E++ E
Sbjct: 546 EDLESLKE 553



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 71/226 (31%), Gaps = 22/226 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +    RL+ + Q+   +     +  ++  +  +         +  L+  + + +   ++
Sbjct: 455 LREALIRLRDMTQQQEADLKDQVKDLEEELKDYNNLKAQYESTKEKLLASEANMEDLKQQ 514

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-E 543
              L          +E  +EL +      E       +  D    K    E     +  E
Sbjct: 515 VEALG--------AEEMIEELTEKNMQYQEEVNELKAIIEDLESLKELNDELEINHIESE 566

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E +   +    +     +  +A I D+     +   L    +          +QI 
Sbjct: 567 KQLQEEIDFREGIYHEQNRKISQQDAVIEDLEYTLSKFRELVSTLQNDLEDMR-ASQQIT 625

Query: 604 QVTAKGEAEKTAILI------------SILHEVHIQIHQIESQEAM 637
           +  A     ++  ++            + +  + +++ ++E++E+ 
Sbjct: 626 ETEATDLTVRSRAMMDLNMKLQASAAKAQVKSIDLELGRMEAEESA 671


>gi|312864145|ref|ZP_07724380.1| replicative DNA helicase [Streptococcus vestibularis F0396]
 gi|311100377|gb|EFQ58585.1| replicative DNA helicase [Streptococcus vestibularis F0396]
          Length = 453

 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 41/143 (28%), Gaps = 6/143 (4%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S   + ++     + E ++L  +  +P  L    + +    +     + ++  + +    
Sbjct: 2   SEAQELRVQPHDLVAEQSVLGAIFINPEKLITVREFIEADDFYKYSHRVIFKAMVTLSDR 61

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                   +   L ++        L      + L             + Y + +A     
Sbjct: 62  NDAIDATTVRTILDDQ------DDLQNIGGISYLVDLVNSVPTSANAEYYAKIVAEKAML 115

Query: 589 RLLSRQKEEIEKQIAQVTAKGEA 611
           R +  +  E   Q  +   + + 
Sbjct: 116 RHIINRLTETVNQAYEGATESDE 138


>gi|257878279|ref|ZP_05657932.1| von Willebrand factor domain-containing protein [Enterococcus
           faecium 1,230,933]
 gi|257889520|ref|ZP_05669173.1| von Willebrand factor domain-containing protein [Enterococcus
           faecium 1,231,410]
 gi|260559830|ref|ZP_05832009.1| von Willebrand factor [Enterococcus faecium C68]
 gi|293560628|ref|ZP_06677116.1| von Willebrand factor type A domain protein [Enterococcus faecium
           E1162]
 gi|314939056|ref|ZP_07846320.1| von Willebrand factor type A domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943544|ref|ZP_07850308.1| von Willebrand factor type A domain protein [Enterococcus faecium
           TX0133C]
 gi|314948802|ref|ZP_07852173.1| von Willebrand factor type A domain protein [Enterococcus faecium
           TX0082]
 gi|314952209|ref|ZP_07855226.1| von Willebrand factor type A domain protein [Enterococcus faecium
           TX0133A]
 gi|314993253|ref|ZP_07858629.1| von Willebrand factor type A domain protein [Enterococcus faecium
           TX0133B]
 gi|314994816|ref|ZP_07859947.1| von Willebrand factor type A domain protein [Enterococcus faecium
           TX0133a01]
 gi|257812507|gb|EEV41265.1| von Willebrand factor domain-containing protein [Enterococcus
           faecium 1,230,933]
 gi|257825880|gb|EEV52506.1| von Willebrand factor domain-containing protein [Enterococcus
           faecium 1,231,410]
 gi|260074054|gb|EEW62377.1| von Willebrand factor [Enterococcus faecium C68]
 gi|291605451|gb|EFF34897.1| von Willebrand factor type A domain protein [Enterococcus faecium
           E1162]
 gi|313590927|gb|EFR69772.1| von Willebrand factor type A domain protein [Enterococcus faecium
           TX0133a01]
 gi|313592251|gb|EFR71096.1| von Willebrand factor type A domain protein [Enterococcus faecium
           TX0133B]
 gi|313595674|gb|EFR74519.1| von Willebrand factor type A domain protein [Enterococcus faecium
           TX0133A]
 gi|313597759|gb|EFR76604.1| von Willebrand factor type A domain protein [Enterococcus faecium
           TX0133C]
 gi|313641625|gb|EFS06205.1| von Willebrand factor type A domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644745|gb|EFS09325.1| von Willebrand factor type A domain protein [Enterococcus faecium
           TX0082]
          Length = 742

 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 83/265 (31%), Gaps = 20/265 (7%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           +          E+        ++     + +       K    +      + + ++ L +
Sbjct: 224 NRNYQGNRPLNESLRDRMQHAEKMDLPALEVMAERAMAKTMIQKQELLLKMAEIIRLLDE 283

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
                        +      +     Q L+QS   K          E A+L   ++   +
Sbjct: 284 TAKANAIKGVAGMRSYFYWANTYKQGQDLLQSIYPKVLYKLSTDSDELAILEQALSDSGL 343

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           L E    L   ++ + +         S+  +++    EE ++R       E+L +LD + 
Sbjct: 344 LLELQDILRKEKWGHPQ---------SEHTKERTISAEEANERNITENAEEIL-RLDEKK 393

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +       E    +  +  +  +    +      +  +IE +  +    G+  +    
Sbjct: 394 SLSAEEPNEGEEKQEETIE--KNEIPPQMQ----KERSSDIEGKNQKEQQTGDDSQEMSA 447

Query: 618 I---SILHEVHIQIHQIESQEAMIE 639
               +   E+  Q+++ E+++ M E
Sbjct: 448 SDMEAHDKEIKKQLNK-EARQIMKE 471


>gi|171779748|ref|ZP_02920704.1| hypothetical protein STRINF_01585 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281850|gb|EDT47284.1| hypothetical protein STRINF_01585 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 639

 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 65/170 (38%), Gaps = 18/170 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +     E       +    L +
Sbjct: 472 NHLDIDSKEVLEDALIDFDGTLLFVSHDRYFINRVATKVLEISEEGSTLYLGDYDYYLEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L ++  +           +    D    YQ   A  K  R L+R+  EIE Q+ 
Sbjct: 532 KAELEELARMKEEEAQERTTVVDEKVPAND----YQAQKANQKELRKLTRRITEIENQLE 587

Query: 604 QVTAKGEAE----KTAILISILHEVHIQIHQI-ESQEAMIEGFGKMSGRL 648
           ++ A+ E            S L ++  ++ ++ E QE ++  + ++S ++
Sbjct: 588 EIEAREEEINQVMLATNEASELIDLQKELDELTEQQETLMLEWEELSEKV 637


>gi|284009794|ref|NP_001164991.1| homer homolog 3 [Xenopus (Silurana) tropicalis]
 gi|159155310|gb|AAI54867.1| Unknown (protein for MGC:180573) [Xenopus (Silurana) tropicalis]
          Length = 357

 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/208 (9%), Positives = 66/208 (31%), Gaps = 16/208 (7%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             RL +   +  T+ +                  +       L + + ++     E   +
Sbjct: 114 AARLARERSQDKTDLTNPALNITSQQVLPSPIISANGPGDDKLFRSQSAEMELSTERERV 173

Query: 489 LTLINHPAILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
             +++  ++ + Q++      + +  +   KL + L       + +  +    +      
Sbjct: 174 KKMLSEGSVCEVQWEA----EFFSLQDNNNKLVAALRESNANVEKWKKQLAAYQEEAETL 229

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            + + +L+ Q         T E    ++    +    L K         +E    + ++ 
Sbjct: 230 RQRVAELESQTLK-----ETNEEPGDELALRLKDLETLLKTKEEEILLLKEQRPDLMELE 284

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
           ++ +      L+  L E+  +  ++E +
Sbjct: 285 SERDK-----LLQRLQELEERNQEMEKE 307


>gi|308809017|ref|XP_003081818.1| Myosin class II heavy chain (ISS) [Ostreococcus tauri]
 gi|116060285|emb|CAL55621.1| Myosin class II heavy chain (ISS) [Ostreococcus tauri]
          Length = 5463

 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 78/243 (32%), Gaps = 24/243 (9%)

Query: 421  RYYYSQAIRDRLQQL--FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            R    + +  R   L   +    E        +   R       S+      +    LS 
Sbjct: 3709 RAALEEQLAARDADLERVRSDRAERQSALESERDGLRAELDALVSKLHELEEVQAASLSD 3768

Query: 479  KPSLR---EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              S R   E  L         +  +Q +  + + ++ + L+     L S   E +     
Sbjct: 3769 FDSQRAALEEQLAARDAELERVRSDQSERQSALEFERDGLRAELDALVSKLNELEEVQAA 3828

Query: 536  EIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSR 593
             +     +     E L   D ++       +  ++ +   R G +  L AL  +   L  
Sbjct: 3829 SLSDFDSQRAALEEQLAARDAELERVRSDQSERQSALEFERDGLRAELDALVSKLNELEE 3888

Query: 594  -----------QKEEIEKQIAQVTAKGE------AEKTAILISILHEVHIQIHQIESQEA 636
                       Q+  +E+Q+A   A+ E        + A ++S       ++ +++ + +
Sbjct: 3889 VQAASLSDFDSQRAALEEQLAARDAELEGVRVQFEAEIAAILSERCAHEEELDRMQRRLS 3948

Query: 637  MIE 639
            ++E
Sbjct: 3949 LVE 3951


>gi|83589803|ref|YP_429812.1| condensin subunit Smc [Moorella thermoacetica ATCC 39073]
 gi|83572717|gb|ABC19269.1| condensin subunit Smc [Moorella thermoacetica ATCC 39073]
          Length = 1187

 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 77/223 (34%), Gaps = 8/223 (3%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            Q +R++L Q+  +            ++    R+++G   R  +          +     
Sbjct: 290 LQGLREQLVQVRGRLSLVDEKLAALARQRVEDREREGLLAREEEKLRAAAAELARQVETG 349

Query: 485 AALLLTLINHPAILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
              +  L    A  +E  ++L           L +L   LF    E+     E +     
Sbjct: 350 REEMAALEQDLAAGRETREKLRAERDELA-ARLARLKEDLFQVAHERAGCHNELVRLEEK 408

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           + G   +L+Q  RQ+++        E     +R G +Q   +    + L  +K  +E ++
Sbjct: 409 QAGMERVLEQKQRQLQELNNERERLEGL---LRAGEEQLGEIEANLKALEGKKASLETEL 465

Query: 603 --AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
              +       +  A L      +  ++  +   +A  EGFG+
Sbjct: 466 PLQEADLAAREKHLAGLKEQQRLLVARLKVLRQAQADYEGFGE 508


>gi|70982205|ref|XP_746631.1| conserved hypothetical protein [Aspergillus fumigatus Af293]
 gi|66844254|gb|EAL84593.1| conserved hypothetical protein [Aspergillus fumigatus Af293]
          Length = 474

 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 58/216 (26%), Gaps = 22/216 (10%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           ++Q          S               + P   L +S          P   E  L   
Sbjct: 41  QVQVSQADQRKLVSPPSLASSDMTPPPSSQVPGAPLRRSRSRSTTYLASPPDIEKTLCAA 100

Query: 491 L--------------INHPAILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                             P +     + L  A     +    KL + L S F   +    
Sbjct: 101 YGASENLPSVGDIDTAGEPELRIIAKELLSVAQEARMSALHFKLQNSLLS-FTSNEAIKR 159

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            E+  +L  R    L     R              +  ++    ++   L +    L R+
Sbjct: 160 AEVEHQLARREVEILQSSEYRNRHGPTEVKPLQPMSNAELEAALRRNQELERVNATLDRR 219

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               +K I Q     E EK+ +L+   + +  +I +
Sbjct: 220 LRRAKKLIEQ-----EKEKSELLMEENNLLKKRIRE 250


>gi|224047486|ref|XP_002199585.1| PREDICTED: coiled-coil domain containing 88A [Taeniopygia guttata]
          Length = 1884

 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 102/308 (33%), Gaps = 36/308 (11%)

Query: 366 YGKTAFEKLIVESLPLVDM--LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
             K + +    +S  L+      ++  E    N+  +   LE   ++    +   + R  
Sbjct: 515 QEKQSLQNSQNQSKDLMKEKAQLEKTLEALRENSERQIKLLEQENEHLNQTVASLRQRSE 574

Query: 424 YSQAIR----DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            S   R    ++  ++  + I E S      +   +   ++    +       + +    
Sbjct: 575 ISAEARMKEIEKENKILHESIKETSSKLNKLEFEKKQVRKELEHYKEKGERAEELENELH 634

Query: 480 PSLREAALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            + +E  LL   I +  I  E+ + L     D+  +N +L+K    L +   + +    E
Sbjct: 635 RTEKENELLQKKITNLKITCEKIEALEQENSDLETENRKLKKTLDSLKNLTFQLESLEKE 694

Query: 536 EIHQRLCERGFGELLKQLD---RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                         ++ L     +V    L +   E+    +++  +   A +K+   L 
Sbjct: 695 NSQLDEENLELRRTIESLKCTSIKVAQLQLENKELESEKEQLKKSLELMKASFKKTERLE 754

Query: 593 ---------------------RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                                ++ +++E ++  +  +   +     +  L     ++ Q+
Sbjct: 755 VSYQGLDTENQRLQKALENSNKKIQQLESELQDLETEN--QTLQKNLEELKISSKRLEQL 812

Query: 632 ESQEAMIE 639
           E +  ++E
Sbjct: 813 EKENKLLE 820



 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 72/231 (31%), Gaps = 20/231 (8%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    +     L+Q   +   +     +  K+  +  + K  +       +   +   K 
Sbjct: 808  RLEQLEKENKLLEQETSQLEKDKKQLEKENKRLRQQAEIKDSTLEENNVKISNLERENKS 867

Query: 481  SLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +E  +   + +    + +E  + +     D   L  L   L +          E++  
Sbjct: 868  LFKEIVVYKESCLRVKELEKENKELVKRATIDKKTLVTLREDLVN----------EKLKT 917

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEI 598
            +       +L  +L++   +        +++    +    +  +  K+   +  +    +
Sbjct: 918  QQMNNDLEKLAHELEKIGLNKERLLHDEQSSDDRYKLLESKLESTLKKSLEIKEEKIAAL 977

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIEGFGKMSG 646
            E ++ + T          L   L  V      + Q + +E M++     SG
Sbjct: 978  EARLEESTNLN-----QQLRQELKTVKKNYEALKQRQEEERMVQNSPPRSG 1023



 Score = 37.2 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 54/159 (33%), Gaps = 27/159 (16%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR--LCERGFGELLKQLDRQ 556
           +E  + +  + +D      + + +      Q+     +      L +     LLK +   
Sbjct: 139 EEFIERIQSLDFDTRA--AVAAHIQEVTHNQENVFDLQWMDVIVLTQEYVEPLLKNMALH 196

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRF------------------RLLSRQKEEI 598
           ++            I+++ +  +  L                        + LS +  + 
Sbjct: 197 LKRLIDERDEHSETIIELSEE-RDCLRFLPHASAAQSPCGSPGMKRTESRQHLSVELADA 255

Query: 599 EKQIAQVTAKGEAEKTAILI---SILHEVHIQIHQIESQ 634
           + +I ++  + E EKT  L+     L ++  ++ +++ +
Sbjct: 256 KAKIRRLRQELE-EKTEQLLDCKQELEQMEAELKRLQQE 293


>gi|194205615|ref|XP_001496512.2| PREDICTED: similar to LOC506564 protein [Equus caballus]
          Length = 1418

 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    E+I  +L       +L +    ++ A +     E + + V    + +   ++R  
Sbjct: 581 QSMPSEQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRIL 638

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +  EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 639 ARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 685



 Score = 37.9 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 94/260 (36%), Gaps = 23/260 (8%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL----FQKYITEH 443
              + +             + +     I     R    +  ++RL+ L     ++ + + 
Sbjct: 610 HILQEKEEQHQLAVTAYLKNSRKEHQRI---LARRQTIEERKERLESLNIQREKEELEQR 666

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
               +  +K    R ++   +R  +  L + +  KK ++RE       I    +  + ++
Sbjct: 667 EAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTVRERL---EQIKKTELGAKAFK 723

Query: 504 ELADIRYD--NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDA 560
           ++     +  + +       + +  VEQ     +E+ +RL  +    +  ++  R     
Sbjct: 724 DIDIEDLEELDPDF------IMAKQVEQLEKEKKELQERLKNQEKKIDYFERAKRLEEIP 777

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-EIEKQIAQVTAKGEAEKTAILIS 619
            + SA  E  I D+   ++Q          L R+K  E + +++++    +      L +
Sbjct: 778 LIKSAYEEQRIKDM-DLWEQQEEERITTMQLEREKALEHKNRMSRMLEDRDL-FVMRLKA 835

Query: 620 ILHEVHIQIHQIESQEAMIE 639
               V+ +  + + +E + E
Sbjct: 836 ARQSVYEEKLK-QFEERLAE 854


>gi|149197251|ref|ZP_01874303.1| DNA topoisomerase [Lentisphaera araneosa HTCC2155]
 gi|149139797|gb|EDM28198.1| DNA topoisomerase [Lentisphaera araneosa HTCC2155]
          Length = 897

 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 57/165 (34%), Gaps = 14/165 (8%)

Query: 472 VKGKLSKKPSLREAA---LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           ++  L +  +L E     LL  L+ +  I+ +  ++ A++ +D    + +      +   
Sbjct: 616 IRESLEENKALSEKQWQTLLKVLLRYDNIMPDLKEKAAELGFDTELNEVIAKA-EEEKKI 674

Query: 529 QKYFLPEEIHQRLCERGFGE---------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
                  E+   L    F E            + +          +    ++  +    +
Sbjct: 675 NVDSNATELLALLENVTFEEPQKPAKGRRAFNEANFYKSLKTQSESGRNLSVNQINALKK 734

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             L   K+      +  E++ +I +  A  + E++  + ++L  +
Sbjct: 735 MVLKYQKQVENFEAKAAELKLEIPE-EAVIDPEESKEITALLKAL 778


>gi|90075196|dbj|BAE87278.1| unnamed protein product [Macaca fascicularis]
          Length = 678

 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 98/284 (34%), Gaps = 18/284 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+++++++ 
Sbjct: 101 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +   +          KL +     ++          
Sbjct: 161 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 220

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +   + +   +     +E++ + + L   +   E      E + ++L        L   
Sbjct: 221 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 280

Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
            ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+
Sbjct: 281 IQKAPDVEQAIEVLTRSSLEVELAAKEWEIAQLVEDVQRLQASLTKLRENSASQISQLEQ 340

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 341 QLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 384


>gi|91082887|ref|XP_971801.1| PREDICTED: similar to omega-crystallin, putative [Tribolium
           castaneum]
 gi|270007608|gb|EFA04056.1| hypothetical protein TcasGA2_TC014288 [Tribolium castaneum]
          Length = 646

 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 97/305 (31%), Gaps = 32/305 (10%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     + EK   E+   + ML +       F       + +          +  K+++ 
Sbjct: 96  KDKQLQSLEKEKEEAQKQIQMLRETLKSAEEFKQKLVEHQEDKEQIENFQTQELSKVKHL 155

Query: 424 YS---QAIRDRLQQL------FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                Q + ++   L       +K  TE S   R  ++ +  +D     +      L   
Sbjct: 156 VLLREQELAEKTAALKEATAQLEKLRTEVSRLCRQEEQLSDLQDDLESLRHSSSRDLAAL 215

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                 S  E         H + L    ++       ++E       L    +E+ +   
Sbjct: 216 ATQLAKSEEER-------RHLSDLVVVLRQRVANETSDDEHVASERRLLEQRLEEAHLHL 268

Query: 535 EEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK------ 586
            +I     +        + +L RQ  + G            + +  +Q  A  +      
Sbjct: 269 ADIKTSWSDKIASLETQVGRLSRQAAEEGSERRRAVQEKETLAEKVRQMEAELECNKLEI 328

Query: 587 -----RFRLLSRQKEEIEKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIESQEAMI 638
                + + L+   EE+ K++  + ++ E E       L + L EV +    +E+ E+ +
Sbjct: 329 NNKETKIKRLTLDVEELSKELNALRSESEEEVAFLRTQLQNALTEVKVVRKNLENTESEL 388

Query: 639 EGFGK 643
           +  G+
Sbjct: 389 DRTGE 393


>gi|6981478|ref|NP_037154.1| rho-associated protein kinase 2 [Rattus norvegicus]
 gi|47605938|sp|Q62868|ROCK2_RAT RecName: Full=Rho-associated protein kinase 2; AltName:
            Full=Rho-associated, coiled-coil-containing protein
            kinase 2; AltName: Full=RhoA-binding kinase 2; AltName:
            Full=p150 ROK-alpha; Short=ROKalpha; AltName: Full=p164
            ROCK-2
 gi|1384133|gb|AAB37540.1| ROK-alpha [Rattus norvegicus]
          Length = 1379

 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 100/288 (34%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 813  MSEKQIKQENNHLMEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 872

Query: 427  AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++      +L +  Q+   +                 K  S++L +S   +    L K
Sbjct: 873  ELKEENEEKTKLCKELQQKKQDLQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 932

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 933  EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 984

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
             +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 985  NKLKDT--QEQLSKLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1042

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 1043 SDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1087


>gi|10177407|dbj|BAB10538.1| unnamed protein product [Arabidopsis thaliana]
          Length = 790

 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 55/147 (37%), Gaps = 13/147 (8%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF--GELLKQL 553
              +   +ELA I     E + +   +     E    + ++I+    +      E++  +
Sbjct: 472 DAFEVVGEELARI-----EAEAMAENVVCAHNELVAQVEKDINASFEKELLREKEIVDAV 526

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLSRQKEEIEKQIA-----QVTA 607
           ++   +A    A       +     ++     +     L+R + E+E+Q+      +   
Sbjct: 527 EKLAEEAKSELARLRVEKEEETLALERERTSIETEMEALARIRNELEEQLQSLASNKAEM 586

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQ 634
             E E+   L   + + + +I +++++
Sbjct: 587 SYEKERFDRLQKQVEDENQEILRLQNE 613


>gi|84497608|ref|ZP_00996430.1| ATP-dependent protease ATP-binding subunit [Janibacter sp.
           HTCC2649]
 gi|84382496|gb|EAP98378.1| ATP-dependent protease ATP-binding subunit [Janibacter sp.
           HTCC2649]
          Length = 855

 Score = 41.0 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/200 (10%), Positives = 66/200 (33%), Gaps = 12/200 (6%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F++++ +     R +++          +  +++    + +   K  + +AAL+       
Sbjct: 316 FRQHVEKDPALERRFQQVFVGEPSVEDTIAILRGLKERYEAHHKVEIEDAALVAAATLSD 375

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             +  +      I   +    +L   +     +      +E+ + +      EL  + + 
Sbjct: 376 RYITGRQLPDKAIDLVDEAASRLRMEI-----DSSPVEIDELRRAVDRLKMEELHLERET 430

Query: 556 Q----VRDAGLWSATTEANIVDV--RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
                 R A L +   + +         +    +   R   +  Q +E   ++ +   + 
Sbjct: 431 DDASVERLARLRADLADKSEELAGLNARWDAEKSGLNRVGDIKAQVDEARTRLEKARREY 490

Query: 610 EAEKTAIL-ISILHEVHIQI 628
           + E  + +    + E+  Q+
Sbjct: 491 DFETASRIEFGEIPELEKQL 510


>gi|324499471|gb|ADY39774.1| Myosin-9 [Ascaris suum]
          Length = 2074

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 94/270 (34%), Gaps = 15/270 (5%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +            +   L++M +K+E E    ++  +  EL+      I+ + DQ  +  
Sbjct: 1249 KTQANVEMRAEREKQFQLLNMGFKKELEESKTSSELKINELKQKYAKQIDALNDQIDQLK 1308

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              +   ++ ++L +K ++E +      +      ++K     + +S L++ +        
Sbjct: 1309 RLKHQSEKSKELIEKELSEKNMLLEQCQGAKVDAERKRK---VAESGLLEWQTKANDVEL 1365

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E A L   ++   +  E  Q  + +    +++  L   +     +      +   ++  +
Sbjct: 1366 ERASLANALSKAQV--EIGQLHSSLESKEDDIASLQKKVVDLSDQLTESAEQLGVEKSQK 1423

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                E ++ L+ ++          E     + +              L +Q  +++ + +
Sbjct: 1424 GVLQEKVRDLENELEAEREVREDDEGTRQKMEKEIVN----------LKQQLMDLKSKGS 1473

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +   K   E    L   L     Q+ + ++
Sbjct: 1474 EEALKQAEESRKKLCKDLEACQKQLEEAQA 1503



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/314 (10%), Positives = 98/314 (31%), Gaps = 42/314 (13%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            D   R   +     L  + + L     +   +    +      +LE   K       D++
Sbjct: 1447 DEGTRQKMEKEIVNLKQQLMDLKSKGSEEALKQAEESRKKLCKDLEACQKQLEEAQADRQ 1506

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                  + +     +  +  +       R  +K  R  DQ+   +R   ++ +  +    
Sbjct: 1507 RSEKAKKKLMQE-NEDARVELDNLRAQYREMEKKQRKFDQQLAEERGKTATAIAERDQLA 1565

Query: 480  PSLREA-ALLLTLINHPAILQEQYQELADIRYDNN-ELQKLWSFLFSDFVEQKYFLPEEI 537
              +RE  + +L +      ++   +EL  ++     EL  L +              E+ 
Sbjct: 1566 QDVRERGSKVLIMAKEMDEMRGCLEELERLKRSLQLELDNLMTTKDDAGRSAHELEREKR 1625

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                      E + +L+   + +       E N+  V+   ++A+A+ ++      ++  
Sbjct: 1626 LLEAEVAKMKEEILELEDSYQSSEDARLRLEVNLQTVKNDLEKAVAVKEQEN--EEKRRN 1683

Query: 598  IEKQIAQVTAKGEAEK-------------------------------------TAILISI 620
             ++++ ++  + +AE+                                        +   
Sbjct: 1684 AQRRVRELEDELDAERRTRASAVQQKKKMEGELNKASADLDALTRQRDDLSRQLRKVTQS 1743

Query: 621  LHEVHIQIHQIESQ 634
            L ++  ++ ++ ++
Sbjct: 1744 LKDLQQELEEMRTE 1757


>gi|311259257|ref|XP_003128011.1| PREDICTED: protein Hook homolog 1-like [Sus scrofa]
          Length = 728

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 97/301 (32%), Gaps = 28/301 (9%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D             + ++  + 
Sbjct: 269 DDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQ 328

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      +R +++ L +  +          ++  +    +   +   +            
Sbjct: 329 KLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSE 388

Query: 481 SLREAALLLTLIN----HPAILQEQYQELAD---IRYDNNELQ--KLWSFLFSDFVEQKY 531
           S R   L   +      H A+L+E+ + +     ++  N EL+  ++     +       
Sbjct: 389 SKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTDTSAT 448

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA-TTEANIVDVRQGYQQALA------- 583
              E +   +    + E+  +L  + +   L    T    I ++++   Q          
Sbjct: 449 KSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGTENERIEELQEQLDQKHRKMNELET 508

Query: 584 ----LYKRFRLLSRQKEEIEKQIAQVTAKGE-------AEKTAILISILHEVHIQIHQIE 632
                 +R R L +Q E+++K + +  +K E        +K    +  L EV  ++ + +
Sbjct: 509 EQRLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVQEELQKKQ 568

Query: 633 S 633
            
Sbjct: 569 E 569


>gi|301611453|ref|XP_002935255.1| PREDICTED: myosin-4-like [Xenopus (Silurana) tropicalis]
          Length = 1937

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 29/273 (10%), Positives = 90/273 (32%), Gaps = 17/273 (6%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       + +  ++       + I+ +       + +  
Sbjct: 1563 IQLELNQVKSEVDRKIAEKDEENEQLKRNSQRAIDTIQSTLDSEIRSRNDALRLKKKMEG 1622

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ-RLMQSSLVKGKLSKKPSLREAALLL 489
             L +L  +    +   G   K+    + Q   +Q +L  +   +  L ++ ++ E     
Sbjct: 1623 DLNELEIQLSHANRQAGEAQKQLRNVQAQYKDAQLQLDDAVRGQDDLKEQVAVIER---- 1678

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIH----QRLCER 544
                +     E  +  A +       +K+    L       +    +       ++  E 
Sbjct: 1679 ---RNNLQQAEIEENRAALE-QTERSRKIAEQELLDASERVQLLHSQNTSLIGSKKKLEA 1734

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               +L  +++  V++A       +  I D     ++          L R K+ +E+ +  
Sbjct: 1735 DLSQLQNEVEEAVQEARNAEEKAKKAITDAALMAEELKKEQDTSAHLERMKKNLEQTVKD 1794

Query: 605  VTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
            +  + +  +   +      L ++  ++ ++E++
Sbjct: 1795 LQNRLDEAEQLAMKGGKKQLQKLESRVRELENE 1827


>gi|269105173|ref|ZP_06157867.1| IncF plasmid conjugative transfer DNA-nicking and unwinding protein
            TraI [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268160623|gb|EEZ39122.1| IncF plasmid conjugative transfer DNA-nicking and unwinding protein
            TraI [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 1980

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 59   KGFYYCFSCHVKGDHLSFLSALLGCSFIESV----QRLAAIAGVPLPVVDPKIEKKEKIQ 114
            +G++  ++   KG+ ++ + +    SF E+V    Q L       L   +   +  + + 
Sbjct: 1618 RGYFRDWTTGDKGNLINLIMSAKSFSFKEAVNFAEQILTEPENHNLIENEKHDKLVDTLP 1677

Query: 115  TDLIRLIEVATDFFHH 130
              +  L E A  +F  
Sbjct: 1678 KQMSELKERAMSYFEQ 1693


>gi|269120918|ref|YP_003309095.1| ATP-dependent protease La [Sebaldella termitidis ATCC 33386]
 gi|268614796|gb|ACZ09164.1| ATP-dependent protease La [Sebaldella termitidis ATCC 33386]
          Length = 769

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 65/199 (32%), Gaps = 35/199 (17%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            +  G +      +   L+  ++    I    Y+++     +  + + L   +  +F   
Sbjct: 77  KMPNGNVKVLVEAKHRVLIKEVMEEDGIFYSDYEDIFSKPIEETKAEALKRKVIEEFENY 136

Query: 530 KYFLPEEIHQRL----------------------CERGFGELLKQLDRQVRDAGLWSATT 567
                  +   +                        +   ELL+ LD + R   + S   
Sbjct: 137 AKITGRILPDLIYNLKEIKNIDKAFDLICTNLLIETKIKQELLEILDIEQRAYKILSILE 196

Query: 568 EANIV-----DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA-EKTAILISI- 620
           +   +     D+    ++ +A  ++   L  + + +++++   T   +  E+ A  +   
Sbjct: 197 KEIEIFSLEKDIENKVREQMAEVQKNYYLREKIKAMKEEMGDDTDSEDEVEELAERMEES 256

Query: 621 -----LHE-VHIQIHQIES 633
                L E +  +I +++ 
Sbjct: 257 GIPIELKEKLRKEISRMKK 275


>gi|225630226|ref|YP_002727017.1| replicative DNA helicase [Wolbachia sp. wRi]
 gi|225592207|gb|ACN95226.1| replicative DNA helicase [Wolbachia sp. wRi]
          Length = 483

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 50/178 (28%), Gaps = 16/178 (8%)

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E  L+  +I    I       +    + +   Q +++ +             
Sbjct: 19  KLPHNLEAEQMLIGAMIRDNRICDAVEDTITAENFYDPLHQSIFTQISKTRKHGIVANEL 78

Query: 536 EIHQRLCER------GFGELLKQLDRQVRDAGLWSATTEANIV--------DVRQGYQQA 581
            +             G  E L +L  +   A    + T              + Q     
Sbjct: 79  SLKMFFENDQAFTECGGVEYLAKLAAKASIALDIYSLTRIIRDTYLRRCLIKLGQEIVGD 138

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-TAILISILHEVHIQIHQIESQ-EAM 637
              Y        Q E+   ++  +  K + EK    L S + +V  +I  +++  EA+
Sbjct: 139 SYNYDIENPAQAQIEQAMTKLFNLAVKKQGEKTYIKLASSIKDVVEKISTLKNNPEAL 196


>gi|159122134|gb|EDP47256.1| conserved hypothetical protein [Aspergillus fumigatus A1163]
          Length = 474

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 58/216 (26%), Gaps = 22/216 (10%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           ++Q          S               + P   L +S          P   E  L   
Sbjct: 41  QVQVSQADQRKLVSPPSLASSDMTPPPSSQVPGAPLRRSRSRSTTYLASPPDIEKTLCAA 100

Query: 491 L--------------INHPAILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                             P +     + L  A     +    KL + L S F   +    
Sbjct: 101 YGASENLPSVGDIDTAGEPELRIIAKELLSVAQEARMSALHFKLQNSLLS-FTSNEAIKR 159

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            E+  +L  R    L     R              +  ++    ++   L +    L R+
Sbjct: 160 AEVEHQLARREVEILQSSEYRNRHGPTEVKPLQPMSNAELEAALRRNQELERVNATLDRR 219

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               +K I Q     E EK+ +L+   + +  +I +
Sbjct: 220 LRRAKKLIEQ-----EKEKSELLMEENNLLKKRIRE 250


>gi|125823756|ref|XP_696594.2| PREDICTED: hypothetical protein LOC568188 [Danio rerio]
          Length = 862

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 74/219 (33%), Gaps = 20/219 (9%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q +R+R++ L QK+ ++  G  R  +K  + + Q+   + +   +      +   
Sbjct: 566 QKEGLQDMRERIRALEQKWPSKRLGQQREPEKQGQVKTQRLKRRSVTPVNGSAFPEALTE 625

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLPEEIHQ 539
           + RE                +      +        +L   L                 Q
Sbjct: 626 AARERTA-------------RLDMSDALELSERTYLELVRVLCEALELSDNELSGCASLQ 672

Query: 540 RLCERGFGELLK----QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            L       ++      L+       L ++ ++   + +++  ++   L +R  L ++ +
Sbjct: 673 HLPPDERQRIVSLRQTDLEFVRSRFDLQNSQSQKQELLLQENQREIHTLRERGELWTQTQ 732

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            E+E    +   + +  +   L   L +  IQ+ + + +
Sbjct: 733 AELES--VKAELETQRREMENLQQALQDSVIQLQRNKQE 769


>gi|77457711|ref|YP_347216.1| hypothetical protein Pfl01_1484 [Pseudomonas fluorescens Pf0-1]
 gi|77381714|gb|ABA73227.1| putative exported protein [Pseudomonas fluorescens Pf0-1]
          Length = 136

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%)

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           Q   L +R +   +Q+EE+ KQ+       E+ + A L      + +Q+ + ++ 
Sbjct: 40  QITELQQRLKASEQQREELSKQLQNADNTRESAQLARLRQENQRLKLQLKEAQAS 94


>gi|169770297|ref|XP_001819618.1| nuclear pore complex protein An-Mlp1 [Aspergillus oryzae RIB40]
 gi|83767477|dbj|BAE57616.1| unnamed protein product [Aspergillus oryzae]
          Length = 2032

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 72/211 (34%), Gaps = 18/211 (8%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           Q +R  L ++ Q               +AR  +       +++++  +   + K + +  
Sbjct: 430 QELRSTLDEMVQDLEASKPEIDELRADHARLENAVVEMSNILETAGKERDDATKEARKWQ 489

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             +  L     IL++Q ++L+       +++ L   +      +  +  EE+ +++  + 
Sbjct: 490 GQVEGLAREGDILRQQLRDLSA------QVKVLVLEIAVLKEGEGSYDREEL-EKIARKE 542

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             +   +L    R                   ++    L ++   L R   E+  ++   
Sbjct: 543 VEDAAAELTPTGRFISQNLM-----------TFKDLHELQEQNVTLRRMLRELGDKMEGA 591

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            A+ +          L E+ I++     + A
Sbjct: 592 EAREKDAVRQQEQEELKELRIRVQTYRDEIA 622


>gi|325089289|gb|EGC42599.1| kinesin heavy chain [Ajellomyces capsulatus H88]
          Length = 958

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 91/307 (29%), Gaps = 30/307 (9%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKR-ETENRSFNTPDERAELEIHLKNCINHIKDQ 418
               R    +  +  I E      +L ++ E E       + + ++     +  N  KD 
Sbjct: 418 MDVSRSETPSRPDSRIGERSSTPSILLEKDEREEFLRRENELQDQIAEKETHIANTEKDL 477

Query: 419 KLRYYYSQAIRD---RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
             +    + +++   R  +  +K   E +      +K +    +   +   ++ +  +  
Sbjct: 478 IEKKEELKFLKENTIRTGKDNEKLNAEVNELRMQLEKVSYESKEASITMDTLKEANAELT 537

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQ--------------ELADIRYDNNE--LQKLW 519
                  ++   +       +   ++                +L    + +NE  +Q L 
Sbjct: 538 AELDELKQQLLDVRMSARETSAALDEKDKKKAERMAKMMAGFDLGMNVFSDNERKIQNLV 597

Query: 520 SFLFSDFVEQKYFLPEEIHQRLC-ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
             + +         P              E    + +        SA  E       +  
Sbjct: 598 DRVEALQASNAAGDPIAADDLAEFRASLIEAQGFVRQAELTVSHRSAYQELPDNKRVELE 657

Query: 579 QQALALYKRFRLL------SRQKEEIEKQIAQV---TAKGEAEKTAILISILHEVHIQIH 629
            +   L KR+  +          EEI+ +++Q     A+ E++    L S L     ++ 
Sbjct: 658 DRIAGLQKRYEEVLEKGLSKEDVEEIKTRLSQAYEDRAEHESKMVEELRSELTRRDKELE 717

Query: 630 QIESQEA 636
           ++    A
Sbjct: 718 RLRQSLA 724


>gi|297475334|ref|XP_002687937.1| PREDICTED: EF-hand calcium binding domain 4B [Bos taurus]
 gi|296487099|gb|DAA29212.1| EF-hand calcium binding domain 4B [Bos taurus]
          Length = 723

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 2/148 (1%)

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             L N    L   + +L +   + NEL+       + + E+   L EE+ Q++       
Sbjct: 188 HLLSNFEDFLTRIFSQLLEAHEEKNELECALKKKIAAYDEEIQHLYEEMEQQIKTEKEQF 247

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE--IEKQIAQVT 606
           LLK  +R    +        +   ++ Q  Q+   L  +   L   K E   E    ++T
Sbjct: 248 LLKDTERFRARSQELERKLLSKEQELEQLVQKQKRLEGQCTALHNDKHETKAENTKLRLT 307

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
            +  A +       L +   Q+  +  +
Sbjct: 308 NQELARELERTSRELQDAQQQLESLRQE 335



 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 54/145 (37%), Gaps = 9/145 (6%)

Query: 503 QELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERG------FGELLKQLDR 555
           ++L D+  D     Q L   L +  V +     +++  +L +        F + L ++  
Sbjct: 143 EDLGDMDEDEEAQFQTLMDRLGAQKVLEDEADVKQLWLQLKKDEPHLLSNFEDFLTRIFS 202

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           Q+ +A       E  +      Y + +     +  + +Q +  ++Q      +    ++ 
Sbjct: 203 QLLEAHEEKNELECALKKKIAAYDEEIQHL--YEEMEQQIKTEKEQFLLKDTERFRARSQ 260

Query: 616 ILISILHEVHIQIHQIESQEAMIEG 640
            L   L     ++ Q+  ++  +EG
Sbjct: 261 ELERKLLSKEQELEQLVQKQKRLEG 285


>gi|238487306|ref|XP_002374891.1| filament-forming protein (Tpr/p270), putative [Aspergillus flavus
           NRRL3357]
 gi|220699770|gb|EED56109.1| filament-forming protein (Tpr/p270), putative [Aspergillus flavus
           NRRL3357]
          Length = 2032

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 72/211 (34%), Gaps = 18/211 (8%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           Q +R  L ++ Q               +AR  +       +++++  +   + K + +  
Sbjct: 430 QELRSTLDEMVQDLEASKPEIDELRADHARLENAVVEMSNILETAGKERDDATKEARKWQ 489

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             +  L     IL++Q ++L+       +++ L   +      +  +  EE+ +++  + 
Sbjct: 490 GQVEGLAREGDILRQQLRDLSA------QVKVLVLEIAVLKEGEGSYDREEL-EKIARKE 542

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             +   +L    R                   ++    L ++   L R   E+  ++   
Sbjct: 543 VEDAAAELTPTGRFISQNLM-----------TFKDLHELQEQNVTLRRMLRELGDKMEGA 591

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            A+ +          L E+ I++     + A
Sbjct: 592 EAREKDAVRQQEQEELKELRIRVQTYRDEIA 622


>gi|254472391|ref|ZP_05085791.1| hypothetical protein PJE062_3364 [Pseudovibrio sp. JE062]
 gi|211958674|gb|EEA93874.1| hypothetical protein PJE062_3364 [Pseudovibrio sp. JE062]
          Length = 1184

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 68/237 (28%), Gaps = 17/237 (7%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             ++   +  ++    +   +RL +L            +  + N + +  +       + 
Sbjct: 697 EQLSSQAEHLIQENRLKDAENRLSELESVVANIEDFAKQGAQPNEQSQPPEIAQVSKTRE 756

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF-------L 522
             +K   S   S         LI  P +L E         +   E ++  +        +
Sbjct: 757 DYLKQYESLDASKSVFLRQELLIKDPELLAEFQTIKVLFEFAMPEAKRCINADQLDGLSI 816

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
               +E+       I  R   +    L K+   Q            A      +     L
Sbjct: 817 VMASLEEHRDQLNTILNRARVQNAEALAKRKQEQEAAKQARLDAAPAVSFKDAEKLASKL 876

Query: 583 ALYKRFRLLSRQKEEIEK----------QIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +  +++   S + +  ++          Q+ ++   G+  +   ++  L     ++ 
Sbjct: 877 SAMRKYVKDSAKLKIFDEQANFVRLSIAQLKEMAKTGQTSQIDEILKALGRAKAELQ 933


>gi|168056374|ref|XP_001780195.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668345|gb|EDQ54954.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 766

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            + D+  R         +A    +R   Q+  A  ++FR    +  E+  +I ++     
Sbjct: 7   DETDQGHRRRSEGEDLEDAVQDQIRATEQEIRAKEEKFRAKEEEIRELRAEIREL----- 61

Query: 611 AEKTAILISILHEVHIQIHQIESQEA 636
             + + L + +  V  +I      +A
Sbjct: 62  KAEISKLRAEIRAVESEIATASGDQA 87


>gi|149638908|ref|XP_001511617.1| PREDICTED: similar to L-FILIP [Ornithorhynchus anatinus]
          Length = 1184

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 49/373 (13%), Positives = 112/373 (30%), Gaps = 25/373 (6%)

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           +   DV+ + +       +      +     +L  L    +L  D             +L
Sbjct: 93  QAREDVIHMLKTEKTKPQALEAHYGSAAPEGILRALHRDAILAQDTAIGEDVYEKPISEL 152

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRETENR 393
                        +L                   E    +    +    D     E E  
Sbjct: 153 DRLEEKQKETYRRMLEQLLL--AEKCHRRTVYELESEKHKHTDYMNKSDDFTNLLEQERE 210

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                 E+ +L    K   N  +  KLR    +     L  + ++ I       +  K  
Sbjct: 211 RLKKLLEQEKLYQARKEKENTKRLNKLRDELVKLKSFALMLVDERQIHIEQLGLQSQKVQ 270

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP--AILQEQYQELADIRYD 511
              +  K   ++L   +    +  +K    EA L      H      Q+     A +   
Sbjct: 271 DLTQKLKEEEEKLRAIASKSKEERQKLLRLEADL-----EHKTSRFSQDHEDLTAKLAGQ 325

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
            ++ ++L   L    + ++    EE +Q L        L++L  ++      +++  A +
Sbjct: 326 ESQNRQLKLTL--GGLSRRIEELEETNQSLQRAEVE--LQELRAKMARGECGNSSLMAEV 381

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            ++R+   +     +       Q  +++K++ +         +  L   + ++  ++  +
Sbjct: 382 ENLRKRVLEMEGKDEEITKTETQCRQLKKKLQEEDHH-----SKALQLEVEKLQRRMSDL 436

Query: 632 ESQEAMIEGFGKM 644
           E  E   E FG+ 
Sbjct: 437 EKLE---EAFGQS 446


>gi|114669068|ref|XP_511839.2| PREDICTED: myosin-8 isoform 2 [Pan troglodytes]
          Length = 1937

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHTRVVETMQSTLDAEIRSRNDALRVKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1624 DLNEM-EIQLNHANRLAAESLRNYRNTQGILKETQLHLDDALRGQEDLKEQ------LAI 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     + Q + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLQQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828


>gi|47230390|emb|CAF99583.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 477

 Score = 41.0 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 72/233 (30%), Gaps = 13/233 (5%)

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVK 473
           +          + +R+R+   F           +   + NA  R  +   +    +    
Sbjct: 73  LPVPVQVRDSLEKVRERMYGQFGGMQQSMQKLSQEIREANAHRRSLESEVKTRTSAMDAY 132

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL-QKLWSFLFSDFVEQKYF 532
            +++        +L  +L+ +     ++ +EL  +     +  ++L          Q   
Sbjct: 133 DQMNNSLITANISLQKSLLENCQSRADRREELKSLNNTFEKAQRRLQEKEKELEAAQAEN 192

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDA--GLWSATTEANIVDVRQGYQQALALYKRFRL 590
               +          + L++L  +++        A  E +  ++     Q      R   
Sbjct: 193 QTLRLQVESSREAQAQALQELSARLQQEYDEKLQAEQEKHREEIENLQAQLDEYILRLEE 252

Query: 591 LSRQKEEIEKQIAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQ 634
             R+ +  E QIA+   +            ++   L + L E   ++H +E  
Sbjct: 253 AERKIQAAESQIAEKDQRISEVERLLGCMGKEKTQLETKLQECEQRLHLLELT 305


>gi|260577360|ref|ZP_05845331.1| ATPase-like protein [Rhodobacter sp. SW2]
 gi|259020433|gb|EEW23758.1| ATPase-like protein [Rhodobacter sp. SW2]
          Length = 814

 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 3/146 (2%)

Query: 262 IRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCF 321
            R  VR      ++L EG    LS+ QA  Q V + LG +           +   +++  
Sbjct: 237 ERSAVRLPGREPLVLCEGVETALSIWQATGQEVWACLGISNIARAPVPEKAM---VIIAR 293

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           DGD PG +A  + +      +  G  V       GED +  +   G+ A    I  + PL
Sbjct: 294 DGDAPGSKAEGQILRTASSLVARGFTVLMATPPEGEDFNDILVREGEDAVRSRIAGAEPL 353

Query: 382 VDMLWKRETENRSFNTPDERAELEIH 407
                   +++    +  E A+    
Sbjct: 354 RADQADTRSKDLYIGSDVEIAKRVRE 379


>gi|194886737|ref|XP_001976673.1| GG19889 [Drosophila erecta]
 gi|190659860|gb|EDV57073.1| GG19889 [Drosophila erecta]
          Length = 444

 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 28/258 (10%), Positives = 80/258 (31%), Gaps = 25/258 (9%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R       ++   +       +   E   +      E  E +I     +  I  Q+ 
Sbjct: 143 QQWRQNAADQEQQYKEQLKQCQAQV---ELLRQENQKLKEDLETKIEQIEVVQTI-SQQE 198

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN----ARHRDQKGPSQRLMQSSLVKGKL 476
           +    Q++ ++ + L +    E     +    +      +     P   +  + + + + 
Sbjct: 199 QDELRQSVSEK-RSLVENMRVEIDKLQQLKMHSFEFVPENGSNTEPDPGMALNYVQRDEH 257

Query: 477 SKKPSLREAALLLTLINHPAILQ---EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            ++    +  L   ++ +  I        +E+  ++      Q+L   +  D  E K   
Sbjct: 258 DRQVRDLQRQLSKLVVENLEITDMKKTYIEEIDCLKVTLASAQELMQKMNRDINELKAKD 317

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            ++              ++++       ++    E    D  +   +        R L R
Sbjct: 318 IQK-------------QERIEHLQTQNDIYRKDFEMERADREKNAGEKDQYLLDLRALQR 364

Query: 594 QKEEIEKQIAQVTAKGEA 611
           + +E+ + +AQ   + +A
Sbjct: 365 RNQELIEALAQSHRESKA 382


>gi|205830438|ref|NP_001128630.1| myosin, heavy polypeptide 1, skeletal muscle, adult [Rattus
            norvegicus]
          Length = 1942

 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1568 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQSTLDAEIRSRNDAIRIKKKMEG 1627

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1628 DLNEM-EIQLNHSNRMAAEALRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAM 1680

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1681 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1740

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1741 ISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1800

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1801 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1832


>gi|313230497|emb|CBY18713.1| unnamed protein product [Oikopleura dioica]
 gi|313242245|emb|CBY34408.1| unnamed protein product [Oikopleura dioica]
          Length = 817

 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 78/249 (31%), Gaps = 7/249 (2%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           +E ++R      + A L+  L+   + + D         ++ +RL  + +       G  
Sbjct: 230 QEAQDRVTQVVTQNAHLKRELQEFNDRVNDSLQHPPQDLSLAERLTIILEGGTKAVQGLQ 289

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVK--GKLSKKPSLREAALLLTLINHPAILQ-EQYQE 504
           R         +        ++S+      +L  +    E+ L     ++  ++Q +Q   
Sbjct: 290 RQLHDQEEENEGIKREMSEIKSNEAPEAQELRNRIEELESQLKELQSDYADLMQMDQADR 349

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
            A +     +  +  + L       +    E       +    + L++L + + +     
Sbjct: 350 EATLEAIKLKYLREKNILIDRDETIQALQEEMFA---KDNDHRQDLEELSKFIDELRSER 406

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
              +  +  +           ++   + +Q  E E+++ Q        +       L  +
Sbjct: 407 WKKDQEMDKLLNQLIDLEDAVEQQIAV-KQFAEHERKLLQEEVNELQSQIVEQNKELIML 465

Query: 625 HIQIHQIES 633
             +  + E 
Sbjct: 466 KRKAEKSEE 474


>gi|297300246|ref|XP_002805558.1| PREDICTED: plectin-1 isoform 3 [Macaca mulatta]
          Length = 4546

 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 83/274 (30%), Gaps = 19/274 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       +RE    +    +  AEL          +  + 
Sbjct: 1712 QELIRLRAETEQGEQQRQLLEEELARLQREAAAATQKRQELEAELAKVRAEMEVLLASKA 1771

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1772 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1831

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------FLFSDFVEQKYFL 533
              L E   L  +     +  E    L +   +N  L++L            +   Q    
Sbjct: 1832 RVLAEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKAD 1889

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             EE   +L +    EL                  E  +   RQ  ++ LAL   F   + 
Sbjct: 1890 IEERLAQLRKASDSEL-----------ERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 1938

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             K E+E ++ ++ +  E    +   + L     +
Sbjct: 1939 GKAELELELGRIRSNAEDTLRSKEQAELEAARQR 1972



 Score = 40.6 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 45/153 (29%), Gaps = 16/153 (10%)

Query: 497  ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            +  +  +        + ELQ+L +       ++     E    R+      +L  +++ +
Sbjct: 2190 LRLQLEETDHQKNLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAE 2249

Query: 557  VRDAGLWSATT-------------EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEK 600
             R   L                  +      R       A   R      L++Q+   EK
Sbjct: 2250 NRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEK 2309

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             + +     +        + L +   ++ Q ++
Sbjct: 2310 MLKEKMQAVQEATRLKAEAELLQQQKELAQEQA 2342



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 80/226 (35%), Gaps = 14/226 (6%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1328 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1387

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            ++    +  +   ++       +  Q+   I+ +                + +      +
Sbjct: 1388 REAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQXXXXXXXXXXGQARQAEAAERSRL 1447

Query: 538  HQRLCERGFGELLKQLDRQ----VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                  R     L+  +RQ      +     A  E      RQ  ++A  L ++ +  S+
Sbjct: 1448 RIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDESQ 1507

Query: 594  QKEEIEKQIA---QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +K + E ++A   +  A+   EK    +  L E+     +++++EA
Sbjct: 1508 RKRQAEAELALRVKAEAEAAREK-QRALQALEEL-----RLQAEEA 1547



 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1677 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1736

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1737 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1774


>gi|296108265|ref|YP_003619966.1| chromosome segregation SMC protein [Legionella pneumophila 2300/99
           Alcoy]
 gi|295650167|gb|ADG26014.1| chromosome segregation SMC protein [Legionella pneumophila 2300/99
           Alcoy]
          Length = 1164

 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 50/394 (12%), Positives = 123/394 (31%), Gaps = 20/394 (5%)

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
            G++ Y   GA    +      +   + +    + G   V  L +A  + + + L  A  
Sbjct: 110 DGESFYYLNGARCRRKDITDIFLGTGAGARSYSIIGQGTVSRLIEAKPEELRAYLEEAAG 169

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
             + +   + + + +     +   +    +  +L         +            +  I
Sbjct: 170 VSKYKERRRETLQRIEQTRDNLTRVADIRE--ELGKHLQRLERQAKAAERYTILKEEEKI 227

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
                 A +         V     +E   R+                    ++D  ++  
Sbjct: 228 CRAEIQALKWQEYSEKQTVKQRELQELAIRNEQQQSLLTGCYKERAVLNEQLQDAIVQSQ 287

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             Q    +      +         R  K+    R Q     +L++  L            
Sbjct: 288 SIQDSLYQSGTEIARLEEAIQQQEREKKRLENDRQQMQVDSQLIEKQLKLDNEELHNCKL 347

Query: 484 EAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSF--LFSDFVEQKYFLPEEIHQR 540
           +A  L   ++H  +  +EQ     + + + ++ +K+W    + S+ ++ +Y L +   Q 
Sbjct: 348 KAQQLEEHLHHLKMEFKEQESLWQEKQKEQSQWEKIWQEVQINSNTIKNEYQLTQAKLQH 407

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L ++    L+           L     E + + +    +  + L ++   L   +E  E+
Sbjct: 408 LEQKRHQVLV----------RLEKLNLEQSAISLDDLQKNKIKLQEKHFQLKETQEFDEE 457

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           Q+ Q       E  + L + L     Q+H ++ +
Sbjct: 458 QLRQAN-----ETQSDLQNQLQNTEQQLHALQDE 486


>gi|293396755|ref|ZP_06641031.1| cell division protein MukB [Serratia odorifera DSM 4582]
 gi|291421019|gb|EFE94272.1| cell division protein MukB [Serratia odorifera DSM 4582]
          Length = 1484

 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 70/213 (32%), Gaps = 13/213 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              ++ +L    Q    + +   +Y +        +   Q    S+    +  +    RE
Sbjct: 392 VDELKSQLADYQQALDVQQTRAIQYQQALQALERARALCQLPELSAENAEQWLETFQARE 451

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCE 543
                 L+       +  Q+L+     +++ ++ +  +     E  +    +   + L +
Sbjct: 452 QEATDALL-------KLEQKLSVADAAHSQFEQAYQLVCKIAGEVSRSEAWQTARELLRD 504

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR---LLSRQKEEIEK 600
               +   +  + +R           +  D  +  Q+      R      L   ++E+E+
Sbjct: 505 WPSQQHQAERVQPLRLRLSELEQRLRSQQDAERLLQEFCKRQGRDYQPDELDALQQELEE 564

Query: 601 QIAQVTAKGEA--EKTAILISILHEVHIQIHQI 631
           ++  ++       E+   +   L ++  +I ++
Sbjct: 565 RLESLSLNVSEAGERRMEMRQELEQIQQRIKEL 597


>gi|257892539|ref|ZP_05672192.1| von Willebrand factor domain-containing protein [Enterococcus
           faecium 1,231,408]
 gi|257828918|gb|EEV55525.1| von Willebrand factor domain-containing protein [Enterococcus
           faecium 1,231,408]
          Length = 742

 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 83/265 (31%), Gaps = 20/265 (7%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           +          E+        ++     + +       K    +      + + ++ L +
Sbjct: 224 NRNYQGNRPLNESLRDRMQHAEKMDLPALEVMAERAMAKTMIQKQELLLKMAEIIRLLDE 283

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
                        +      +     Q L+QS   K          E A+L   ++   +
Sbjct: 284 TAKANAIKGVAGMRSYFYWANTYKQGQDLLQSIYPKVLYKLSTDSDELAILEQALSDSGL 343

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           L E    L   ++ + +         S+  +++    EE ++R       E+L +LD + 
Sbjct: 344 LLELQDILRKEKWGHPQ---------SEHTKERTISAEEANERNITENAEEIL-RLDEKK 393

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +       E    +  +  +  +    +      +  +IE +  +    G+  +    
Sbjct: 394 SLSAEEPNEGEEKQEETIE--KNEIPPQMQ----KERSSDIEGKNQKEQQTGDDSQEMSA 447

Query: 618 I---SILHEVHIQIHQIESQEAMIE 639
               +   E+  Q+++ E+++ M E
Sbjct: 448 SDMEAHDKEIKKQLNK-EARQIMKE 471


>gi|226290926|gb|EEH46354.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1284

 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 30/268 (11%), Positives = 84/268 (31%), Gaps = 10/268 (3%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            + +              +       + R   +  +N      E  +  +  I ++K   
Sbjct: 356 HTSMLSSTMNLPYNQYCHATKNSRTSFGRGYADPYYNHYGSVKEPALVQQPMIENVKSAS 415

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                + ++  R+Q +          Y       +    +    +   + SL++ +    
Sbjct: 416 SGEGLNVSLLSRIQSIIPDISQLVVSYRDQQSHMSAREAEHKQIEAQHEESLMRKEFY-- 473

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               +  +  T         +    + ++R++   LQ++   + +   E +    E    
Sbjct: 474 IEALQMQMQKTANESAKECSKLKGRITELRFELGGLQEIKKDIENSLAEAQKENNEL--- 530

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               +   +L  ++D   R         E  +   ++  Q+ALA+ K+   L    EEI+
Sbjct: 531 ---SQMREDLQVEIDTLQRAIQGAKEAHEQELEKQQEKEQEALAIQKQE--LEGYFEEIK 585

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627
            +  ++  +    +   L+     +  +
Sbjct: 586 NEDDRLADEQLKAREKELMDERDSLKAE 613


>gi|224087669|ref|XP_002308204.1| predicted protein [Populus trichocarpa]
 gi|222854180|gb|EEE91727.1| predicted protein [Populus trichocarpa]
          Length = 753

 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 57/162 (35%), Gaps = 26/162 (16%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCER----------GFGELLKQLD---RQVRD 559
            E+++    L ++  +       ++     E               +LK +D     VR 
Sbjct: 575 PEMKEKMQALKAEVQKSGASSAADLDDGTKESISKMKKEIELELASVLKSMDLNVEIVRA 634

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
             L     +A +  + +   + +    +   L    + ++ ++A+     +A     + +
Sbjct: 635 KELIDQDLKAKVESLEEETNKKIENLMKSSDLKNTIKLLKLEMAKAGKTPDAALKNKIEA 694

Query: 620 ILHEVHIQI-------------HQIESQEAMIEGFGKMSGRL 648
           +  ++  ++              +++++   +EG G ++G L
Sbjct: 695 LEQQIKRKLSAAISSSEIKEKHEELQAEIKALEGDGGLNGSL 736


>gi|183601900|ref|ZP_02963269.1| hypothetical protein BIFLAC_06461 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219682814|ref|YP_002469197.1| large Ala/Glu-rich protein [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190390|ref|YP_002967784.1| hypothetical protein Balac_0335 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195796|ref|YP_002969351.1| hypothetical protein Balat_0335 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218785|gb|EDT89427.1| hypothetical protein BIFLAC_06461 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620464|gb|ACL28621.1| large Ala/Glu-rich protein [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248782|gb|ACS45722.1| hypothetical protein Balac_0335 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250350|gb|ACS47289.1| hypothetical protein Balat_0335 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793377|gb|ADG32912.1| hypothetical protein BalV_0324 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 572

 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 91/297 (30%), Gaps = 23/297 (7%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ- 418
              +    K   + L+ ++    D + K      +    + R E E    +    + DQ 
Sbjct: 103 SQTLVNNAKLDAQHLVDDAQAKADTILKNAQSEANTIVTNARQEAEQLRASTAKTVSDQR 162

Query: 419 ----KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                      +  + RL     +   E +       K    + +    +     S    
Sbjct: 163 QALDLELTNSREEHKKRLASERAQQERELADLSAQTAKTISEQRKSANEEMARLKSETND 222

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++    +     L         ++ E  ++  +I    +  +     +       +    
Sbjct: 223 QIETALADANKKLADVREQVSKLMTEAQRKAGEI---TDAAKAHAQEITDAAEVNRTQTM 279

Query: 535 EEIHQRLCE-------------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
            +++  + +             +   ELL+ L+ + R +    A  E       +    A
Sbjct: 280 SQVNAEVEQIRADIAAQQDEATKKVQELLQSLE-ESRKSAKEEAEKEIGQAKQAREEADA 338

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            A  KR      +  EI ++  +  +K   ++     S L  +  +I +++++EA I
Sbjct: 339 YAAEKRESA-DTEAREIVRKAGEEASKQIEDRRKAAQSELDGLRKRIGELQTREADI 394


>gi|159129736|gb|EDP54850.1| dynactin, putative [Aspergillus fumigatus A1163]
          Length = 1378

 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 66/226 (29%), Gaps = 15/226 (6%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           +   L ++  K            +K       +    +     + K +   +P   E   
Sbjct: 328 VARELDEMKTKLKVMEKKRAEDREKLKTLEKLQSERDKFEA-IIQKLQAKYQPQQLEIGE 386

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           L   +       E+ + L        E+  L   +  +  +        +  R+ E    
Sbjct: 387 LRKKLKDTEAKLEEVERLQAEHESILEMAALDREMAEETADAFKHECAVLRARVEELELE 446

Query: 548 ELLK--------QLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-YKRFRLLSRQKEEI 598
             +         Q+      +       E     +R+   +   +  ++   L  Q +E+
Sbjct: 447 LEVLKEENEELGQVMTPEEKSSHGWLQMEKTNERLREALIRLRDMTQQQESELRDQIKEL 506

Query: 599 EKQIA-----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           ++ +      +   +   EK  +  + + ++  Q+      E MIE
Sbjct: 507 QQDLEDYAVIKSQYEATKEKLLVSENNVEDLKQQLETALGAEEMIE 552


>gi|126328457|ref|XP_001366213.1| PREDICTED: similar to Leucine zipper protein 1 [Monodelphis
           domestica]
          Length = 1076

 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 8/106 (7%)

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK--- 600
               E  K L +   +                    +  AL KR   +  + EEI++   
Sbjct: 28  DELEEATKNLQKAEDELLDLQDKVIQAEGSDSSMLAEVEALRKRVLKIEGKDEEIKRAED 87

Query: 601 --QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
             Q+ +   K E   T  L + +  +  ++ ++E  E   E FG+ 
Sbjct: 88  LCQLMKDKLKEEESLTRELKAEIERLQKRMAELEKLE---EAFGRS 130


>gi|145539842|ref|XP_001455611.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423419|emb|CAK88214.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1057

 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 56/140 (40%), Gaps = 2/140 (1%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           Q   QEL      N +L +  + L  +  + K    E++            +++L  Q++
Sbjct: 378 QRLQQELDQQHRQNEQLHQQNAELLKNLDKFKLLEEEKMQLENKVSMLAAEIERLKVQLK 437

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
                    +  +  +++   +   L K+   L RQ E+    I ++  K   +    L 
Sbjct: 438 QKNDKILQEQEELKRLQEQLNEIDELQKQNDDLVRQLEQANNTIDELEKKL--QAITELE 495

Query: 619 SILHEVHIQIHQIESQEAMI 638
             L + + +I+ +E++ AM+
Sbjct: 496 QKLQDANNKIYDLENKVAML 515


>gi|118099470|ref|XP_415403.2| PREDICTED: similar to CENTRIOLIN [Gallus gallus]
          Length = 2346

 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 73/221 (33%), Gaps = 20/221 (9%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-------SLVK 473
           R    Q +  ++Q L Q      +   +  K+      ++   + L  S           
Sbjct: 494 REDLEQQLSKKIQILHQLQEGALALEKQMEKQKREIGKKQKELEDLKSSLASVNSKEARH 553

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             +  + + +E  + +    +  +     + L+ I  +  E++ L   L    +     L
Sbjct: 554 AHMRAQKASKEQQIEVMNKQYKQLESRLDEMLSRIAKETEEIKDLEQQLTDGQIATNEAL 613

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             ++   +   G  E L+ +  Q + A            + ++  +   +L++R   L  
Sbjct: 614 KRDLESIII--GLQEYLESVKHQAKQAN----------DECKELQKDKESLFQRLADLED 661

Query: 594 QKEEIEKQIAQVTA-KGEAEKTAILISILHEVHIQIHQIES 633
           ++  ++  +      + E       +    E++  + + + 
Sbjct: 662 ERNSLKIVVMDAENMRKEIAMLEGALQEQREINESLREGQG 702


>gi|41056079|ref|NP_956375.1| kinectin [Danio rerio]
 gi|37682121|gb|AAQ97987.1| kinectin 1 [Danio rerio]
          Length = 1235

 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 80/210 (38%), Gaps = 6/210 (2%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           ++  LQ L  +   +     +  +   +  ++    + L+++SL++    +         
Sbjct: 708 LKAELQNLQAQISEKVVSVDQLQQSLQKRDEKTRTVENLLETSLIQVANKEDELKVVRNE 767

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              L      +Q+   +  +       L++L   +     + K            E    
Sbjct: 768 CEGLKQQLEAVQK---QTTEQTVSEKALEELQLKIQEKDEQIKSVEGSLQLAVNKESERK 824

Query: 548 ELLKQLDRQVR--DAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQ 604
           ++++ L +QV    A L    T+ +  D+    Q+  A L  + + + R + E+EK++ Q
Sbjct: 825 KVVEDLQQQVEVLTAELAHLKTQESNSDLSAKLQELHAQLTAKDQDVERLQRELEKEMQQ 884

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                 A  +  L++ L E   ++ +++ +
Sbjct: 885 KQQTVSAAPSQELLTALAEKDKRLSEVQEE 914



 Score = 37.6 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 100/274 (36%), Gaps = 24/274 (8%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            S+       + E +N+      E A     +++  + +KD  +   +    + ++ QL 
Sbjct: 552 HSVNAEREKIQSELQNQIMVAESEMASKNKEIQSLHSSLKDTLM---FKDQEQQKVLQLE 608

Query: 437 QKYITEHSGYGRYWKKNARHRD------QKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           Q+         R  + + + ++       +  + ++   +L     ++  ++     L  
Sbjct: 609 QQVRQLLEASQRSMQPDDQLQEKVQDLLNENKTLKVQIDNLQTQLNTQATTVSHFEELQK 668

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--EIHQRLCER--GF 546
           L+    + ++  ++  +    +   ++  + + +   E      E   +  ++ E+    
Sbjct: 669 LLAEKELQRKSLEDSLNAERSSGASRE--TNMQAMHNENHTLKAELQNLQAQISEKVVSV 726

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            +L + L ++           E +++ V     +   +      L +Q E ++KQ  + T
Sbjct: 727 DQLQQSLQKRDEKTRTVENLLETSLIQVANKEDELKVVRNECEGLKQQLEAVQKQTTEQT 786

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
              +A         L E+ ++I + + Q   +EG
Sbjct: 787 VSEKA---------LEELQLKIQEKDEQIKSVEG 811


>gi|74184809|dbj|BAE27998.1| unnamed protein product [Mus musculus]
 gi|123242714|emb|CAM23189.1| myosin, heavy polypeptide 10, non-muscle [Mus musculus]
 gi|123261983|emb|CAM23376.1| myosin, heavy polypeptide 10, non-muscle [Mus musculus]
          Length = 2013

 Score = 41.0 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 101/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 913  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 972

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 973  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEVLLLEDQNS 1032

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1033 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1086

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  QV +  +     E    +++    +        
Sbjct: 1087 RQELEKAKRKLDGETTDLQDQIAELQAQVDELKVQLTKKE---EELQGALARGDDETLHK 1143

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1144 NNALKVARELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1191



 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 83/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L   ++     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1428 EEAKKKLLKDVEALSQRLEEKVLAYDKLEKTKNRLQQELDDLTVDLDHQRQIVSNLEKKQ 1487

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1488 KKFDQLLAEEKGISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1542

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1543 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1602

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1603 EVNMQAMKAQFERDLQTRDEQNEEKKRLLLKQVRELEAELEDERKQRALAVASKKKMEID 1662

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1663 LKDLEAQIEA 1672


>gi|297300250|ref|XP_002805560.1| PREDICTED: plectin-1 isoform 5 [Macaca mulatta]
          Length = 4514

 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 83/274 (30%), Gaps = 19/274 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       +RE    +    +  AEL          +  + 
Sbjct: 1680 QELIRLRAETEQGEQQRQLLEEELARLQREAAAATQKRQELEAELAKVRAEMEVLLASKA 1739

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1740 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1799

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------FLFSDFVEQKYFL 533
              L E   L  +     +  E    L +   +N  L++L            +   Q    
Sbjct: 1800 RVLAEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKAD 1857

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             EE   +L +    EL                  E  +   RQ  ++ LAL   F   + 
Sbjct: 1858 IEERLAQLRKASDSEL-----------ERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 1906

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             K E+E ++ ++ +  E    +   + L     +
Sbjct: 1907 GKAELELELGRIRSNAEDTLRSKEQAELEAARQR 1940



 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 45/153 (29%), Gaps = 16/153 (10%)

Query: 497  ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            +  +  +        + ELQ+L +       ++     E    R+      +L  +++ +
Sbjct: 2158 LRLQLEETDHQKNLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAE 2217

Query: 557  VRDAGLWSATT-------------EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEK 600
             R   L                  +      R       A   R      L++Q+   EK
Sbjct: 2218 NRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEK 2277

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             + +     +        + L +   ++ Q ++
Sbjct: 2278 MLKEKMQAVQEATRLKAEAELLQQQKELAQEQA 2310



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 80/226 (35%), Gaps = 14/226 (6%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLS 477
             L   Y + I + L+++ ++            ++ A         ++L ++ +  K +  
Sbjct: 1296 TLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAE 1355

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            ++    +  +   ++       +  Q+   I+ +                + +      +
Sbjct: 1356 REAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQXXXXXXXXXXGQARQAEAAERSRL 1415

Query: 538  HQRLCERGFGELLKQLDRQ----VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                  R     L+  +RQ      +     A  E      RQ  ++A  L ++ +  S+
Sbjct: 1416 RIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDESQ 1475

Query: 594  QKEEIEKQIA---QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +K + E ++A   +  A+   EK    +  L E+     +++++EA
Sbjct: 1476 RKRQAEAELALRVKAEAEAAREK-QRALQALEEL-----RLQAEEA 1515



 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1645 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1704

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1705 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1742


>gi|254675115|ref|NP_001157012.1| plectin isoform 12alpha [Mus musculus]
          Length = 4691

 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1858 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1917

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1918 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1977

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1978 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 2029

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 2030 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 2089

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 2090 ELELGRIRSNAEDTMRSKEQAELEAARQR 2118



 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2391 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2450

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2451 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2510

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2511 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2570

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2571 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2625

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2626 QEQILQETQALQKSFLSEKDSLLQRERFIE 2655



 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2351 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2410

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2411 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2470

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2471 KAEAELLQQQKELAQEQA 2488



 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1802 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1861

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1862 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1920



 Score = 37.6 bits (85), Expect = 6.4,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1352 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1411

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1412 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1468

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1469 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1525

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1526 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1585

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1586 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1618


>gi|222100368|ref|YP_002534936.1| Condensin subunit Smc [Thermotoga neapolitana DSM 4359]
 gi|221572758|gb|ACM23570.1| Condensin subunit Smc [Thermotoga neapolitana DSM 4359]
          Length = 1170

 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 76/221 (34%), Gaps = 15/221 (6%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSKKPSLREAA 486
           +  +    +    +        ++      +K  S + + S +++   ++  +    E  
Sbjct: 688 KKEILASLKTEQEDLKKQETIVQRELFDLSKKSSSTKTILSEILRSINQMQDEVQNLENL 747

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE--QKYFLPEEIHQRLC-- 542
           L         +   + +   ++       + L   L     E  ++  + +EI+++L   
Sbjct: 748 LAEYRAKEEGLRARREKIFEEMDGLKERRKSLREVLSEYSEELEKERKIIDEINEKLFGL 807

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +   G LL+  +R  R+      T E    ++     Q  AL +      +   E E++I
Sbjct: 808 KAEVGNLLETKERYEREMRDTRRTIERFDEEMEDLKSQMSALEEEMEKYRQTIREHEREI 867

Query: 603 AQVTAKGEAEKT---------AILISILHEVHIQIHQIESQ 634
             +  + ++               +  L E+  +++ ++ +
Sbjct: 868 EHLKKEMDSIFETMRLHRTGKEEKMKELQEIERRMNDLKEE 908


>gi|195132372|ref|XP_002010617.1| GI21614 [Drosophila mojavensis]
 gi|193907405|gb|EDW06272.1| GI21614 [Drosophila mojavensis]
          Length = 969

 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 87/276 (31%), Gaps = 28/276 (10%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           + L ++   L D L  +  ++    + +    L+   +     I     +    + +R +
Sbjct: 422 DALRIQIKSLKDELLNKIPKDELTESNEMIIALQSEGEKLSKEI---LQQSNIIKKLRAK 478

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            +              +   +  R +      + + +S +           R        
Sbjct: 479 EKTSDTLLKKNGEQISQLSSELERLKKSLAAKEEMERSQIEAVCRMTNEKRR-------- 530

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
                   E    + D++     LQ  +  +  D  +++     ++      + + + L 
Sbjct: 531 --VDEENAEYRSRIEDLQSKLAALQASFDGVKGDLQQRQRHEQNQMQA--ENQEYVQQLS 586

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALA------------LYKRFRLLSRQKEEIE 599
           ++  ++R         E  + + ++   + L             L      L RQ E ++
Sbjct: 587 EMREKLRITEHNMVKREQQMREEKRDLLRRLEAAESRAESSTQELSLSTTPLIRQIESLQ 646

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           K + Q T     ++  +L+  L +   Q+  ++ QE
Sbjct: 647 KTLNQRTVAWSKDE-QLLLEKLEDAQAQLRSLQQQE 681


>gi|170290517|ref|YP_001737333.1| hypothetical protein Kcr_0904 [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170174597|gb|ACB07650.1| hypothetical protein Kcr_0904 [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 528

 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 89/259 (34%), Gaps = 15/259 (5%)

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY-YSQAIRDRLQQLFQKYITE 442
               +       +      E  +     +  I  +  +     + I +R   LFQ     
Sbjct: 25  DKIDKLESLMKKDELFPLLEKILEKVKKLGEISPEVEKEIGSGEDISNRANLLFQSVKGI 84

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL---TLINHPAILQ 499
            +               KG  + + +   V     ++ +  E  L+      I    +  
Sbjct: 85  VTSLIGDPAYMRPFLRDKGKIKEVRRILEVT---LEEVNSLERELVTKVNAYIREKGLDI 141

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG---FGELLKQLDRQ 556
           E+ +   +I    + L+ L        V+++   P+E  +++ E       E  ++L   
Sbjct: 142 EELRSYEEIPAALSFLRILKKSEIHKEVQEQKVEPKEEQRKIKEEAISSLNEAFEKLRSI 201

Query: 557 VRDAGLWSATTE--ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
             +  L     E  ++ +++R+ + + L       +L +  + I  ++A+V    +++K 
Sbjct: 202 EEELDLMGVRYERLSHYLELRERFIERLQE-VEEGILQKYLKNITSRLAEVE--NDSKKL 258

Query: 615 AILISILHEVHIQIHQIES 633
             +   L ++   I +++ 
Sbjct: 259 IQISQKLIDLKASIEEMKG 277


>gi|123287162|emb|CAM25631.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
 gi|168984995|emb|CAQ10497.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
 gi|168985398|emb|CAQ07082.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
 gi|168985836|emb|CAQ10770.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
 gi|220860570|emb|CAX15081.1| coiled-coil alpha-helical rod protein 1 [Homo sapiens]
          Length = 255

 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 46/117 (39%), Gaps = 3/117 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 54  LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 113

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + +
Sbjct: 114 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLM 170


>gi|149031288|gb|EDL86295.1| discs, large homolog 5 (Drosophila) (predicted) [Rattus norvegicus]
          Length = 1355

 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 32/331 (9%), Positives = 89/331 (26%), Gaps = 34/331 (10%)

Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351
              +     + +     L K     V   + D   L    +    +        +     
Sbjct: 193 YDTAMDKLEVVKKDYDALRKRYSEKVAMHNSDLSRLEQLGEENQRLQKQTEMLTQQRDTA 252

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
           +  + +   S  R        +L   +    D+ W+ E           +          
Sbjct: 253 IQLQHQCALSLRRFETIH--HELSKATAQNKDLQWEMELLQSELTELRSKQVKTAKESEK 310

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
               +D      Y   + +R Q + +    +        K  +   ++K  S+ +     
Sbjct: 311 YKEERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAASEEVEALRQ 369

Query: 472 VK--GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +K    +    + +E  +L                         + + L   L     E 
Sbjct: 370 IKDTVTMDAGRANKEVEVLR-----------------------KQCKALCQELKEALQEA 406

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +  +    R   +++ + D             +  + ++ +  +      K+  
Sbjct: 407 ---DVAKCRRDWAFRERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 463

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +SR+ +E+++Q+       +  +   L++ 
Sbjct: 464 DVSRELKELKEQME--CQLEKEARFRQLMAH 492


>gi|145506166|ref|XP_001439049.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406222|emb|CAK71652.1| unnamed protein product [Paramecium tetraurelia]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 79/263 (30%), Gaps = 24/263 (9%)

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                ++              ++D   R     A  +RL  +  +   E   +    ++ 
Sbjct: 40  YKTQINQMENRMNQFTQAEALLRDANHRNDILIAEIERLNVIVFQQGNEVEEWKNKAQRL 99

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL-LTLINHPAI--------------- 497
                +    +   +  ++K     +   R   LL    +++  +               
Sbjct: 100 DLALQEYKQFELSNRDMVLKATRLAEEVERLKDLLTKKQLDYQQLQIELSQTQQELEDER 159

Query: 498 --LQEQYQELADIRYDNNELQKLWSFLF---SDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
             ++     LA++  +    + L   L         Q+         +L ++   EL  +
Sbjct: 160 NKVKLLEDRLAELESETPTEKALKQILIQKTEIIRLQQIIQSLNNKIQLQQQEIDELNTK 219

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI---EKQIAQVTAKG 609
            + Q+R       + EAN    ++         +    L +Q  +    ++ +       
Sbjct: 220 YNNQLRANDDLRTSAEANEKKAKKAELDLQKALEEIEKLKKQLADAQNAKQAVQAAPQGV 279

Query: 610 EAEKTAILISILHEVHIQIHQIE 632
           + +K   +  +++ +  Q+ + E
Sbjct: 280 DQKKVDQMQDLIYSLQKQLRETE 302


>gi|42573662|ref|NP_974927.1| unknown protein [Arabidopsis thaliana]
 gi|332008828|gb|AED96211.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 761

 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 48/121 (39%), Gaps = 9/121 (7%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
            + L +   +      E+  + L E+   + +++L  + +         +    +     
Sbjct: 468 HNELVAQVEKDINASFEK--ELLREKEIVDAVEKLAEEAKSELARLRVEK--EEETLALE 523

Query: 579 QQALALYKRFRLLSRQKEEIEKQIA-----QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++  ++      L+R + E+E+Q+      +     E E+   L   + + + +I ++++
Sbjct: 524 RERTSIETEMEALARIRNELEEQLQSLASNKAEMSYEKERFDRLQKQVEDENQEILRLQN 583

Query: 634 Q 634
           +
Sbjct: 584 E 584


>gi|19386917|gb|AAL87037.1|AF365404_1 huntingtin-interacting protein 1 [Homo sapiens]
          Length = 1030

 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 19/214 (8%), Positives = 74/214 (34%), Gaps = 3/214 (1%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             ++   +F    +             +        +   + S +K +L    +  +  +
Sbjct: 336 FDNKFDDIFGSSFSSDPFNFNSQNGVNKDEKDHLIERLYREISGLKAQLENMKTESQRVV 395

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-HQRLCERGF 546
           L    +   +  +  ++    +   ++ + L + L     +++     +     +  +  
Sbjct: 396 LQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQ 455

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
               +    + + + L     +    +     +Q     +    L R+K+E+E  + +++
Sbjct: 456 ANEQRYSKLKEKYSELVQNHADLLRKNAEVT-KQVSMARQAQVDLEREKKELEDSLERIS 514

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +G+  KT   + +L  +  ++   + +  +++G
Sbjct: 515 DQGQR-KTQEQLEVLESLKQELATSQRELQVLQG 547


>gi|332865554|ref|XP_001150406.2| PREDICTED: huntingtin-interacting protein 1-like [Pan troglodytes]
          Length = 803

 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/214 (9%), Positives = 74/214 (34%), Gaps = 3/214 (1%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             ++   +F    +             +        +   + S +K +L    +  +  +
Sbjct: 109 FDNKFDDIFGSSFSSDPFNFNSQNGVNKDEKDHLIERLYREISGLKAQLENMKTESQRVV 168

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-HQRLCERGF 546
           L    +   +  E  ++    +   ++ + L + L     +++     +     +  +  
Sbjct: 169 LQLKGHVSELEAELAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQ 228

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
               +    + + + L     +    +     +Q     +    L R+K+E+E  + +++
Sbjct: 229 ANEQRYSKLKEKYSELVQNHADLLRKNAEVT-KQVSMARQAQVDLEREKKELEDSLERIS 287

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +G+  KT   + +L  +  ++   + +  +++G
Sbjct: 288 DQGQR-KTQEQLEVLESLKQELATSQRELQVLQG 320


>gi|332244041|ref|XP_003271178.1| PREDICTED: filamin-A-interacting protein 1 isoform 2 [Nomascus
           leucogenys]
          Length = 1216

 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 39/363 (10%), Positives = 101/363 (27%), Gaps = 20/363 (5%)

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           +   DV+ + +              +    ++L  L    +L  +             +L
Sbjct: 95  QAREDVIHMLKTEKTKPEVLEAHYGSAEPEKVLRVLHRDAILAQEKSIGEDVYEKPISEL 154

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRETENR 393
                        +L                   E    +    +    D     E E  
Sbjct: 155 DRLEEKQKETYRRMLEQLLL--AEKCHRRTVYELENEKHKHTDYMNKSDDFTNLLEQERE 212

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                 E+ +     K   N  +  KLR    +     L  + ++ +       +  K  
Sbjct: 213 RLKKLLEQEKAYQARKEKENAKRLNKLRDELVKLKSFALMLVDERQMHIEQLGLQSQKVQ 272

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
              +  +   ++L   +    +  +K    E       +      QE  +  A +    +
Sbjct: 273 DLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKALR---FSQEHEEMNAKLANQES 329

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR-QVRDAGLWSATTEANIV 572
             ++L   L       +       + +  E    EL  ++ + +  ++ L      A + 
Sbjct: 330 HNRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLM-----AEVE 384

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           ++R+   +     +       Q  E+ K++ +         +  L   + ++  ++ ++E
Sbjct: 385 NLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHH-----SKELKLEVEKLQKRMSELE 439

Query: 633 SQE 635
             E
Sbjct: 440 KLE 442


>gi|254675244|ref|NP_958791.2| plectin isoform 1 [Mus musculus]
          Length = 4686

 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1853 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1912

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1913 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1972

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1973 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 2024

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 2025 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 2084

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 2085 ELELGRIRSNAEDTMRSKEQAELEAARQR 2113



 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2386 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2445

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2446 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2505

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2506 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2565

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2566 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2620

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2621 QEQILQETQALQKSFLSEKDSLLQRERFIE 2650



 Score = 40.6 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2346 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2405

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2406 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2465

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2466 KAEAELLQQQKELAQEQA 2483



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1797 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1856

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1857 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1915



 Score = 37.6 bits (85), Expect = 6.4,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1347 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1406

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1407 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1463

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1464 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1520

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1521 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1580

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1581 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1613


>gi|1079734|gb|AAC52341.1| citron [Mus musculus]
          Length = 1597

 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 95/298 (31%), Gaps = 38/298 (12%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
             +   +   EKL         +  K        ++ + + +    ++   N +KD    
Sbjct: 205 QAKERAERELEKLHNREDSSEGIKKKLVEAEERRHSLENKVKRLETMERRENRLKDDIQT 264

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+               +         +++ + + K    K+ 
Sbjct: 265 KSEQIQQMADKILELEEKHREAQVSAQHLEVHLKQKEQHYEEKIKVLDNQIKKDLADKE- 323

Query: 481 SLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                +L   +  H     E+ + L++    I   +++++ L   +       K      
Sbjct: 324 -----SLENMMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANSS 378

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALALY 585
           +  +   +   E++ +L +Q       +   EA    + +  +           + L L 
Sbjct: 379 LFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKSRLLELE 438

Query: 586 KRFRL-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            R R            L RQ  E++  + +  +     +   L +    +  Q+ Q +
Sbjct: 439 TRLREVSLEHEEQKLELKRQLTELQLSLQERES-----QLTALQAARAALESQLRQAK 491


>gi|38045919|ref|NP_005329.3| huntingtin-interacting protein 1 [Homo sapiens]
 gi|206729937|sp|O00291|HIP1_HUMAN RecName: Full=Huntingtin-interacting protein 1; Short=HIP-1;
           AltName: Full=Huntingtin-interacting protein I;
           Short=HIP-I
 gi|83405938|gb|AAI10546.1| Huntingtin interacting protein 1 [Homo sapiens]
 gi|168278401|dbj|BAG11080.1| huntingtin-interacting protein 1 [synthetic construct]
          Length = 1037

 Score = 41.0 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 19/214 (8%), Positives = 74/214 (34%), Gaps = 3/214 (1%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             ++   +F    +             +        +   + S +K +L    +  +  +
Sbjct: 343 FDNKFDDIFGSSFSSDPFNFNSQNGVNKDEKDHLIERLYREISGLKAQLENMKTESQRVV 402

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-HQRLCERGF 546
           L    +   +  +  ++    +   ++ + L + L     +++     +     +  +  
Sbjct: 403 LQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQ 462

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
               +    + + + L     +    +     +Q     +    L R+K+E+E  + +++
Sbjct: 463 ANEQRYSKLKEKYSELVQNHADLLRKNAEVT-KQVSMARQAQVDLEREKKELEDSLERIS 521

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +G+  KT   + +L  +  ++   + +  +++G
Sbjct: 522 DQGQR-KTQEQLEVLESLKQELATSQRELQVLQG 554


>gi|325182681|emb|CCA17136.1| myosin 29 putative [Albugo laibachii Nc14]
          Length = 3123

 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 86/267 (32%), Gaps = 11/267 (4%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI----NHIKDQKLRY 422
              A +          D             T D   ++ + L +         +    + 
Sbjct: 705 MMEAIQIRQRGFALREDHDVFFYDHQTLTPTADSIEDMMLELSDLFGVGKEQWQLGTTKV 764

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
           +  + +  +L+Q+        +   + W +N + R+     Q  ++  L K        +
Sbjct: 765 FLKRQVAAKLEQMKLLRSKASARVLQRWFRNLKRREALIIIQCRIRQMLAKK---SARRV 821

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           R+A  L+       +  +Q++ + ++ Y  +        +   F+ +K  L       L 
Sbjct: 822 RQAGHLIGSWTCTWLAVKQFKRMRELYYRQSRCATQIQRMIRGFLVRKKALG---LPSLS 878

Query: 543 ERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +    ++  Q       A        A +    +    A    +  + L ++ + +E +
Sbjct: 879 AKELDVKIAAQERAIEAAALAAEFEQCAAMQKELEALLNARRSVRTAKELDKEIQNVELE 938

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQI 628
           + Q  A  + EK A++   L  +  Q 
Sbjct: 939 LEQSAAAKDFEKCAMIQKHLQSLKNQR 965


>gi|259046635|ref|ZP_05737036.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175]
 gi|259036800|gb|EEW38055.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175]
          Length = 1189

 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 7/129 (5%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEAN 570
            +L+++ + L +  +E      +   Q + +      +    L+    D      T EA 
Sbjct: 220 EQLEEVETALLAVEIETLNAQWKVALQEVEQLQEQLAQTEATLESLQLDIEENQVTLEAR 279

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             D+    ++ + L ++   L  Q++  E++  Q   + + E    L + L E    + +
Sbjct: 280 NEDLDAKQEEYVELIQKVEQLDGQRKVFEQR-RQFAERSDEENQEALAAALRE----LEE 334

Query: 631 IESQEAMIE 639
           +E + A++E
Sbjct: 335 VEEKLALLE 343



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 42/110 (38%), Gaps = 8/110 (7%)

Query: 536 EIHQRLCERGFGE--LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           ++ Q L +  F     L+++ +  R         +  I    Q  +Q +  +++   L +
Sbjct: 724 QLEQTLNQLEFQSRFALEEVQKHERIQQANQFEMDELIEAYEQLEEQYVENHEKLVALQK 783

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI-EGFG 642
               ++K++  +    E +        + E   ++ ++ +  A + E F 
Sbjct: 784 ANASLKKELDYLQLSNEDKT-----QQIQEKQKELQELGTNRARVQEQFN 828


>gi|167533572|ref|XP_001748465.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772984|gb|EDQ86629.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1072

 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 66/215 (30%), Gaps = 7/215 (3%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +   ++L +  Q    E + Y    ++      +    +  ++ +    +LS+     E
Sbjct: 215 LREKHEKLAEDEQALNQEVNAYEIIHQEYQNGFQRNEQRRPEVEKAQHHRELSQDIFNHE 274

Query: 485 AALLL----TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             +       L      L+++ + L +      +  +L          +     E     
Sbjct: 275 NKINFSEYNLLKQQVEALKKECKALEEQSSVARQQVELKER--EARESEVIVNKERNKVE 332

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             +        + +    +    S+  +  I +     +       +   L     +++K
Sbjct: 333 AKKSELAATFTKFNEASENLTACSSQLQEVIDEAAAKQKSLKTRQDKRDNLQATLVDLQK 392

Query: 601 QIAQV-TAKGEAEKTAILISILHEVHIQIHQIESQ 634
           ++ +     G   +   ++  LHE+  Q+  +  +
Sbjct: 393 ELEKASNQSGLQAQLEQVMRELHELKSQVIDLRGE 427



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 7/147 (4%)

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           +H  + Q+ +     I +   E   L   + +   E K    +    R  +    E  ++
Sbjct: 262 HHRELSQDIFNHENKINFS--EYNLLKQQVEALKKECKALEEQSSVAR-QQVELKE--RE 316

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI--EKQIAQVTAKGE 610
                          EA   ++   + +     +     S Q +E+  E    Q + K  
Sbjct: 317 ARESEVIVNKERNKVEAKKSELAATFTKFNEASENLTACSSQLQEVIDEAAAKQKSLKTR 376

Query: 611 AEKTAILISILHEVHIQIHQIESQEAM 637
            +K   L + L ++  ++ +  +Q  +
Sbjct: 377 QDKRDNLQATLVDLQKELEKASNQSGL 403


>gi|164422592|ref|XP_957973.2| hypothetical protein NCU10036 [Neurospora crassa OR74A]
 gi|157069736|gb|EAA28737.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 693

 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 87/266 (32%), Gaps = 18/266 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS----QAIRDRL 432
           E++       + E E         ++  +  +    + +++ +    ++    Q + DR+
Sbjct: 258 EAMSQDREALRAEVEQLRKQLESIQSTHDEEVSQLRSDLEESEAAKEHAETQYQNLLDRV 317

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           +++ +             ++     ++   + +  +    + +       RE   L +  
Sbjct: 318 EKIKETLGERLKRDRARVEELETANEELQQAAQTQEEEAARLREQVDEQARELDSLRSRT 377

Query: 493 N-HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           N       ++ ++L        E++ + S L         +    + +R    G      
Sbjct: 378 NLSQQNWGKEREDLER------EVEHIRSELKKTSAAMGEWEVIAMEERSMREGLEAKAT 431

Query: 552 QLDRQ---VRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSRQKEEIEKQIAQVT 606
            L+ Q   VR+A    A           G Q+AL   +  R R L    E  E+Q+A + 
Sbjct: 432 DLEEQLANVREAYERVAEERNTQSQAIDGLQRALQEIQEARKRELREMVESSEEQLAAMK 491

Query: 607 AKGEAE--KTAILISILHEVHIQIHQ 630
            + E    K          +  ++ +
Sbjct: 492 KRAEEADAKAKEAQDARESLQKELER 517


>gi|74745727|sp|Q5T9S5|CCD18_HUMAN RecName: Full=Coiled-coil domain-containing protein 18; AltName:
            Full=Sarcoma antigen NY-SAR-24
 gi|56204567|emb|CAI22508.1| coiled-coil domain containing 18 [Homo sapiens]
          Length = 1454

 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 24/253 (9%), Positives = 85/253 (33%), Gaps = 4/253 (1%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            R+ +       +E +++E  + +     +++ +       I D+ +   +K         
Sbjct: 867  RQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELE 926

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            +          +    + ++++ L       K +LR+   L  ++    +  E  ++   
Sbjct: 927  KLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTT 984

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            I+    EL++    +     E          +    +     +  LD  +R+        
Sbjct: 985  IKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1044

Query: 568  EANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
               +   + +   +     K+   L+ + +  ++Q+ +        +   +  +  E+  
Sbjct: 1045 IIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNE-QEISQLKKEIER 1103

Query: 627  QIHQIESQEAMIE 639
               +++  E++++
Sbjct: 1104 TQQRMKEMESVMK 1116


>gi|24581854|ref|NP_523480.2| quick-to-court, isoform A [Drosophila melanogaster]
 gi|62471603|ref|NP_001014469.1| quick-to-court, isoform F [Drosophila melanogaster]
 gi|16186129|gb|AAL14006.1| SD06355p [Drosophila melanogaster]
 gi|22945636|gb|AAF52216.2| quick-to-court, isoform A [Drosophila melanogaster]
 gi|61678283|gb|AAX52654.1| quick-to-court, isoform F [Drosophila melanogaster]
 gi|220956236|gb|ACL90661.1| qtc-PA [synthetic construct]
          Length = 721

 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 48/151 (31%), Gaps = 21/151 (13%)

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
            L +      EL  ++     + +  +     ++ +   ++    LL++L          
Sbjct: 477 NLENYELQRQELISMYEHRIEELIRSQDSATSDLKRSHNDK-VEALLQKLAECNTRYSDM 535

Query: 564 SATTEANIVDVRQGYQQALALYKRF-----------RLLSRQKEEIEKQIAQVTAKGEAE 612
               E     +R+  +Q   L ++              + +Q +E E +I++     +  
Sbjct: 536 VPDYEQAKQRIRELEKQLEDLQRKLIEHEEKQNKMYLHMYQQGQEAE-RISRADQALDLA 594

Query: 613 KTA--------ILISILHEVHIQIHQIESQE 635
           +           L+  L     ++  I + E
Sbjct: 595 QRQPESKVSINELLHQLQSTQDELENIRASE 625


>gi|54633204|dbj|BAD66838.1| KIAA0216 splice variant 2 [Homo sapiens]
          Length = 1715

 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 93/335 (27%), Gaps = 17/335 (5%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 1137 RRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 1196

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1197 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1256

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E  L   
Sbjct: 1257 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELEGKLATL 1315

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1316 SDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKNQLEESEFT- 1374

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1375 ----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1430

Query: 609  GEA---------EKTAILISILHEVHIQIHQIESQ 634
                         + +  ++ ++++  Q+ +   +
Sbjct: 1431 MNELMKKHKAAVAQASRDLAQINDLQAQLEEANKE 1465



 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 98/311 (31%), Gaps = 46/311 (14%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R        +   + L  +++  + E E++     ++       L+  +  + DQ  R  
Sbjct: 1269 RDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREK-----RELEGKLATLSDQVNRRD 1323

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +      RL++  ++     +               K    +L ++ L + + +   +++
Sbjct: 1324 FESE--KRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQL-KNQLEESEFTCAAAVK 1380

Query: 484  EAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY----------- 531
                +   I    + + +  +    +    + LQ+  + + +   E +            
Sbjct: 1381 ARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKA 1440

Query: 532  ---------FLPEEIHQRLCER-----GFGELLKQLDRQVRDAGLWSATT------EANI 571
                         ++  +L E         E L+ L  QV                EA I
Sbjct: 1441 AVAQASRDLAQINDLQAQLEEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKI 1500

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVH 625
             ++    +      KR   L+ + +E  +++ +           E E+   L   L +  
Sbjct: 1501 RELETRLEFERTQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTK 1560

Query: 626  IQIHQIESQEA 636
             ++ ++  +EA
Sbjct: 1561 EEMGELARKEA 1571


>gi|313897021|ref|ZP_07830568.1| replicative DNA helicase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312974468|gb|EFR39936.1| replicative DNA helicase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 440

 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/182 (9%), Positives = 58/182 (31%), Gaps = 12/182 (6%)

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
           + +G++  +    E ++L  ++       +  + L    +     +  +S +       +
Sbjct: 1   MQEGRIPPQSIEAELSVLGAMMLKANAATQALELLRAEDFYRQAHRAAFSAMEGLVRAGE 60

Query: 531 YFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
                 + + L + G             L   +              E +I+        
Sbjct: 61  PVDIVTVTEALKKAGHLDQVGGISFLANLTNAVPSTANLEHYAKIVKEKSILRSLIDVST 120

Query: 581 AL--ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            +  A Y+    + +Q  + E++I  +++     +      ++ +   +I ++   +  I
Sbjct: 121 EIAGAAYEGSDEIRQQLSDAERKIFAISSGQNTAEFTPAERVVFDAVERISELSESKGGI 180

Query: 639 EG 640
            G
Sbjct: 181 TG 182


>gi|297830502|ref|XP_002883133.1| hypothetical protein ARALYDRAFT_318610 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328973|gb|EFH59392.1| hypothetical protein ARALYDRAFT_318610 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 705

 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 53/149 (35%), Gaps = 16/149 (10%)

Query: 494 HPAILQEQYQELADI----RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
             ++L+   +E+ +I    ++  N    ++  L+          P+              
Sbjct: 84  FNSLLKGYQEEVDNITKRAKFGENAFLNIYQKLYEA--------PDPFPALASIADQDRK 135

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           L +++ + R   +           ++        L +R R L +Q EE  K++ ++  + 
Sbjct: 136 LSEVESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQMEEKIKEVVEIKQRN 195

Query: 610 EAEKTAILISIL----HEVHIQIHQIESQ 634
            AE+    + +L      +  Q+ Q +  
Sbjct: 196 LAEENQKTMELLKDREQALQDQLRQAKDS 224


>gi|261195112|ref|XP_002623960.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
 gi|239587832|gb|EEQ70475.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
 gi|239610680|gb|EEQ87667.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
          Length = 657

 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 39/118 (33%), Gaps = 7/118 (5%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           +        +   L E+         D+  +  G+     +  + +  +  +QA      
Sbjct: 87  DDARAQNAALIDELKEQVQKAETVS-DQYRKQLGVLQLRLDEAVSEQERLEEQAHEKDSA 145

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ------IHQIESQEAMIE 639
              L  + +E+ +QI  +    E E+ A+      +   +      I +++   A  E
Sbjct: 146 LSALQGEVKELTRQIRDLEQAHETERVAMANEKDQQTKREEDLESTIQRLKETIAQKE 203


>gi|258566465|ref|XP_002583977.1| anucleate primary sterigmata protein B [Uncinocarpus reesii 1704]
 gi|237907678|gb|EEP82079.1| anucleate primary sterigmata protein B [Uncinocarpus reesii 1704]
          Length = 1066

 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 28/287 (9%), Positives = 74/287 (25%), Gaps = 30/287 (10%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ--KLRYYYSQAIRDRLQQL 435
           +            ++ S     E        ++    + D     R    +  R    ++
Sbjct: 541 ARESEKRRLAEMVKSLSDGRIVESDAGAREERDMWKAMLDAETAAREQAEEENRRLRDEI 600

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +   ++            R            + ++         S     + L    + 
Sbjct: 601 LRIKGSDAVSTAHSRSTRRRGMSSVLSQSDSDRDAIRSAARRTATSSTHREIELLQQENA 660

Query: 496 AILQEQYQELADIRYDNNELQKLWSFL----FSDFVEQKYFLPEEIHQRLCERGFGELLK 551
            + +E   + + +   N E ++L+  +         + +    + I +R   R       
Sbjct: 661 ELRREVSAQTSMLTSRNREKERLYQEIEELKLQRRFDGRSIAGDSIFERSASRAQDRSAS 720

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE-------------- 597
           +     R + +     E+      +   Q   L    + L  Q +E              
Sbjct: 721 RASDGTRASRMSDTERESLESKNGELRDQVSTLKLENQGLRAQLDEYMSEIESMDRAYQE 780

Query: 598 ----IEKQIAQVTAKGEAEK--TAILISILHEVHI----QIHQIESQ 634
                E+QI       +          + L ++      +I+ +E +
Sbjct: 781 DMDRAEEQIQSAELARDQAMQLAEEREAELQDLKAEAQDEINALEDE 827


>gi|149638466|ref|XP_001508926.1| PREDICTED: similar to MTSG1 [Ornithorhynchus anatinus]
          Length = 744

 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 63/191 (32%), Gaps = 18/191 (9%)

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
           +     G S+R       K    +  +LRE  +L              ++L   +    +
Sbjct: 419 KSGRDAGSSKREEALKQRKAASQELATLREELVLA---------STAREQLERDK---RD 466

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCE---RGFGELLKQLDRQVRDAGLWSATTEANI 571
           LQ  +  L     +       E+ +RL +       +L     R+  +           +
Sbjct: 467 LQTTYEGLIQKLDQHYQADRTELEERLRDFYTAECEKLRTLCIREAENYKEQLQGQVDTL 526

Query: 572 VDVRQGYQQALALYK--RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
               + ++QA       +  LL  + E    +I +   +        L+     +  QI 
Sbjct: 527 KTSHEAFKQACESSHAEKIDLLREEYETSLSEIKKSHEQERKSLEDSLLERRELLEKQIL 586

Query: 630 QIESQ-EAMIE 639
           +++++ EA+ E
Sbjct: 587 ELQAENEAVGE 597


>gi|13022022|gb|AAK11612.1|AF324061_2 M ST4547 protein [Streptococcus pyogenes]
          Length = 435

 Score = 41.0 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 71/243 (29%), Gaps = 15/243 (6%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K +  R      + D+ + L       +       +K A  +  K   Q    S     +
Sbjct: 146 KKEAERKALEDKLADKQEHLDGALRYINEKEAERKEKEAEQKKLKEEKQISDASRQGLRR 205

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--L 533
                   +  +   L N   +  E  +   + +  +   Q L   L +    +K     
Sbjct: 206 DLDASREAKKQVEKDLAN---LTAEFDKVKEEKQISDASRQGLRRDLDASREAKKQVEKD 262

Query: 534 PEEIHQRLCERGFGELLKQ-----LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
              +     +    + +       L R +  +       E  + +          L K  
Sbjct: 263 LANLTAEFDKVKEEKQISDASRQGLRRDLDASREAKKQVEKALEEANSKLAALEKLNKEL 322

Query: 589 ----RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
               +L  ++K E++ ++ +  AK   E+ A     L ++  +        A      + 
Sbjct: 323 EESKKLTEKEKAELQAKL-EAEAKALREQLAKQAEELRKLRAEKAAGSKTPATKPANKER 381

Query: 645 SGR 647
           SGR
Sbjct: 382 SGR 384


>gi|321463157|gb|EFX74175.1| hypothetical protein DAPPUDRAFT_307484 [Daphnia pulex]
          Length = 1448

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 86/271 (31%), Gaps = 27/271 (9%)

Query: 382  VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
            ++    ++ +    N     A L   +      + D + R      +  ++ +  ++   
Sbjct: 983  MEKNRLQQLQMDITNADMNAAALAKKMMEKSTQLDDARQR---CNELEQKVLRSEEQVGN 1039

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
                      + A+   ++      + +   +    ++ S  +   +  L NH +  + +
Sbjct: 1040 LQGQLRGLQVQRAQGETEQRQLLDELDACKARINQLERQSSTKQDTITMLQNHISTYENK 1099

Query: 502  YQELA--------DIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRL---------C 542
               L          +  +  + ++L + +    ++        E +   L          
Sbjct: 1100 IHMLEKETGDKNSQVELNRRQNERLANEIDQAKIDNSSLRQENERLVASLAQSRGELDRE 1159

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
             +G  +L +++   +       +       +     +Q  AL         ++E +E+ I
Sbjct: 1160 RKGADDLRREIQSYISHVRQVESILARKDEEKDALLKQFQALANETSSFDTERENMERSI 1219

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                   + ++   L + L  V  ++ ++E+
Sbjct: 1220 R-----NQQQEVTTLQAELLTVRRRLGELEA 1245


>gi|310824377|ref|YP_003956735.1| tetratricopeptide repeat-containing protein [Stigmatella aurantiaca
            DW4/3-1]
 gi|309397449|gb|ADO74908.1| Tetratricopeptide repeat protein [Stigmatella aurantiaca DW4/3-1]
          Length = 3177

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 76/282 (26%), Gaps = 25/282 (8%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI-R 429
             +  + ++        K           DE++EL +          D        + +  
Sbjct: 2493 LQARLHQASGETARAAKTLVLAARAAKADEQSELLLESAGLWEEAGDAAEALEVLERLVA 2552

Query: 430  DRLQQLFQKYITEH-SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            +  + L      E     G   +             RL  +  +  +   +  +REA  L
Sbjct: 2553 EAPKALTPSEWAERFLRLGAPARAVEVGFQPALAEGRLSDALALAERAGDEVRVREA--L 2610

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              L+  P +       L        +   L S L     E+       +   + +     
Sbjct: 2611 WALVAEPDVSTVSVDRLVKGLRAEGDFAGLLS-LAERLAERDPERSTALRDEVLDAASAP 2669

Query: 549  ---LLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALYKRFRLLSRQKEEI----- 598
                L+  ++                ++  + +   + + ++ R    +R+ E +     
Sbjct: 2670 GELRLRAFEQLSVQKHFSERLPGLLTSLGQLPEALAEVVLIHVRSLPAARRIESLGVAAE 2729

Query: 599  ----------EKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
                       +++    A+G  E     +  L E    + +
Sbjct: 2730 HWPERRAELLRERLGHERAEGHREDAEQTLEQLIEGETNLEE 2771


>gi|301771554|ref|XP_002921193.1| PREDICTED: myosin-10-like [Ailuropoda melanoleuca]
          Length = 1976

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 876  EEMERKHQQLLEEKNILTEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 935

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q+ + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 936  ERNQILQSEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 995

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L          + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 996  KFIKEKKLTE------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1049

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  Q+ +  +  A  E    +++    +        
Sbjct: 1050 RQELEKAKRKLDGETTDLQDQIAELQAQIDELKVQLAKKE---EELQGALARGDDETLHK 1106

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1107 NNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1154


>gi|290998902|ref|XP_002682019.1| septin [Naegleria gruberi]
 gi|284095645|gb|EFC49275.1| septin [Naegleria gruberi]
          Length = 852

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 88/272 (32%), Gaps = 13/272 (4%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +   +        +    +   ++ L K           ++  +L          +    
Sbjct: 430 EEQAKKKQLEETLQKEERAK--LEKLEKELASLSDQKREEQLKQLRNEEARRKEKMLSDL 487

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R      I++   Q+  +            +K      +    +   +    K +L  K
Sbjct: 488 DRDA-KTKIKEIDSQVRAEKEDRLRQLEEEMRKEEALARKDIEKKFKEEELKKKQELQAK 546

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  +L  +       +E+  +    + +  E Q+L         E+     +EI  
Sbjct: 547 IEKEEKEMLQRIQKKLQEEEERKLKELARKMEEEEQQRL---------EKIKANLKEIEN 597

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEI 598
              +    + + QL R+   A L     E      +Q  Q+ +   +   + + ++++E 
Sbjct: 598 AKKQTPQHQEVSQLRRKSVTARLMQEEEEKIKQLSQQIKQEEMKRIEELEKKMKQEEQER 657

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           ++++ Q   + E E+  +L+  L E   ++ +
Sbjct: 658 KQRMKQELERLEDEQRQLLMQQLEEEKRKLQE 689



 Score = 38.3 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 71/208 (34%), Gaps = 6/208 (2%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             L++   +     +      K+  + +  +     L +    K +L +     E A L 
Sbjct: 392 RELEKTRTELEKRKTMMNEKIKEEEKKKLAEMKQNILQEEQAKKKQLEETLQKEERAKLE 451

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            L    A L +Q +E    +  N E ++    + SD         +EI  ++      + 
Sbjct: 452 KLEKELASLSDQKREEQLKQLRNEEARR-KEKMLSDLDRDAKTKIKEIDSQVR-AEKEDR 509

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           L+QL+ ++R     +           +  ++     K  +      + I+K++ +   + 
Sbjct: 510 LRQLEEEMRKEEALARKDIEKKFKEEELKKKQELQAKIEKEEKEMLQRIQKKLQEEEERK 569

Query: 610 EAE----KTAILISILHEVHIQIHQIES 633
             E            L ++   + +IE+
Sbjct: 570 LKELARKMEEEEQQRLEKIKANLKEIEN 597


>gi|118087494|ref|XP_419285.2| PREDICTED: similar to Hook-related protein 1 [Gallus gallus]
          Length = 1888

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 105/299 (35%), Gaps = 21/299 (7%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           ++             + +S+        +  E  +     +  ELE  +      ++D +
Sbjct: 467 ENQSLLKTVEELRSTMDDSVGGNSSRIVK-MEKENQRLNKKIEELEKEIVQEKQSLQDNQ 525

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                    +++L++ F+          +  ++     +Q   S  L Q S +  +   K
Sbjct: 526 NLSKDLMKEKEQLEKKFETLRENLERQIKLLEQENERSNQTIAS--LRQRSQISAEAQMK 583

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE---- 535
              +E  +L         ++E   +L  + ++  +++K            +    E    
Sbjct: 584 EIEKENKILH------ESIKETSSKLNKLEFEIKQVRKEMEHYKEKAERAEELENELHHL 637

Query: 536 EIHQRLCERGFGEL------LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           E    L ++    L      ++ L+++  D  + +   +  +  ++    Q  +L K   
Sbjct: 638 EKENELLQKKIANLSITCEKIEALEKENSDLDIENRKLKKTLDSLKNLSFQLESLEKENS 697

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            L  +  E+ ++I   ++K  + K A L     E+  +  Q++    +++   K S RL
Sbjct: 698 QLDEENLELRRRIE--SSKCTSIKMAQLQLENKELESEKEQLKKSLELMKASFKKSERL 754



 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 79/238 (33%), Gaps = 30/238 (12%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           ++  ++  + I E S      +   +   ++    +       + +       +E  LL 
Sbjct: 586 EKENKILHESIKETSSKLNKLEFEIKQVRKEMEHYKEKAERAEELENELHHLEKENELLQ 645

Query: 490 TLINHPAILQEQYQELA----DIRYDNNELQKLWSFLFSDF-------VEQKYFLPEEIH 538
             I + +I  E+ + L     D+  +N +L+K    L +          E      E + 
Sbjct: 646 KKIANLSITCEKIEALEKENSDLDIENRKLKKTLDSLKNLSFQLESLEKENSQLDEENLE 705

Query: 539 QR-----------------LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
            R                 L  +      +QL + +         +E   V  +    + 
Sbjct: 706 LRRRIESSKCTSIKMAQLQLENKELESEKEQLKKSLELMKASFKKSERLEVSYQGLDTEN 765

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L K     +++ +++E ++  + ++   +     +  L     ++ Q+E +  ++E
Sbjct: 766 QRLQKALENSNKKIQQLEGELQDLESEN--QTLQKNLEELVISSKRLEQLEKENKLLE 821



 Score = 37.2 bits (84), Expect = 7.9,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 70/223 (31%), Gaps = 23/223 (10%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + +    + L Q+         +  K+N R R Q       ++ + VK    +K +   
Sbjct: 810  LEQLEKENKLLEQETSQLEKDKKQLEKENKRLRQQAEIKDSTLEENNVKINHLEKENKSL 869

Query: 485  AALLLT----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
               +       +    +  E  + +     D   L  L   L +          E++  +
Sbjct: 870  FKQIAVYKESCVRLKELEMENKELVKRASIDKKTLVTLREDLVN----------EKLKTQ 919

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEIE 599
                   +L  +L++   +        +++    +    +  +  K+   +  +    +E
Sbjct: 920  QMNNDLEKLSHELEKIGLNKERLLCDEQSSDDRYKLLESKLESTLKKSLEIKEEKIAALE 979

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIE 639
             ++ + T          L   L  V      + Q + +E M++
Sbjct: 980  ARLEESTNLN-----QQLRQELKTVKKNYEALKQRQEEERMVQ 1017


>gi|8347630|gb|AAF74729.1|AF251288_6 PrmN2 [Bacteroides fragilis]
          Length = 318

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 10/75 (13%)

Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF---LSAL 80
          Y    ++  N      W   P  +E   SF  N  +  +Y F     G  +     L A 
Sbjct: 20 YSPVKQQGVNL-----WYKSPLREEAEASFKVNTEREQWYDFGLGKGGGIIELAAHLYAT 74

Query: 81 LGCSFIESVQRLAAI 95
              +I  ++R+A  
Sbjct: 75 DHVPYI--LKRIAEQ 87


>gi|295767|emb|CAA30855.1| myosin heavy chain 2 [Caenorhabditis elegans]
          Length = 1947

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/252 (9%), Positives = 78/252 (30%), Gaps = 12/252 (4%)

Query: 392  NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
                    +  +      +     K +  R    + +   + +L       +       K
Sbjct: 1600 ENHRKVHQQTIDSIQATLDSETKAKSELFR--VKKKLEADINELEIALDHANKANEDAQK 1657

Query: 452  KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
               R+ DQ    Q+ +     + +  ++  L     L         L  + + L   R  
Sbjct: 1658 NIRRYLDQIRELQQTVDEEQKRREEFREHLLAAERKLAVAKQEQEELIVKLEALERAR-- 1715

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--- 568
                + + S +            + +     +      +  L+  + +A    + +E   
Sbjct: 1716 ----RVVESSVKEHQEHNNELNSQNVALAAAKSQLDNEIALLNSDIAEAHTELSASEDRG 1771

Query: 569  -ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                 D  +  +      ++ + L R K+++E  +  +  + +A + A++      +   
Sbjct: 1772 RRAASDAAKLAEDLRHEQEQSQQLERFKKQLESAVKDLQERADAAEAAVMKGGAKAIQKA 1831

Query: 628  IHQIESQEAMIE 639
              ++++ ++ +E
Sbjct: 1832 EQRLKAFQSDLE 1843


>gi|30260188|ref|NP_005104.2| Golgin subfamily A member 5 [Homo sapiens]
 gi|296439337|sp|Q8TBA6|GOGA5_HUMAN RecName: Full=Golgin subfamily A member 5; AltName: Full=Cell
           proliferation-inducing gene 31 protein; AltName:
           Full=Golgin-84; AltName: Full=Protein Ret-II; AltName:
           Full=RET-fused gene 5 protein
          Length = 731

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 77/269 (28%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK----LRYYYSQAIRDRLQ 433
           +      + K   +            LE         ++DQ     L+    Q  ++RL 
Sbjct: 296 AKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTFQERLH 355

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 356 EADATLKREQESYKQMQSEFA---------ARLNKVEMERQNLAEAITLAER-------K 399

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    +   +    ++     L+     L     +        E++   L E    E L 
Sbjct: 400 YSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLD 459

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 460 SSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHD 519

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   IE
Sbjct: 520 QIAGQKASK--QELETELERLKQEFHYIE 546


>gi|293556385|ref|ZP_06674966.1| conserved hypothetical protein [Enterococcus faecium E1039]
 gi|291601452|gb|EFF31723.1| conserved hypothetical protein [Enterococcus faecium E1039]
          Length = 522

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           ++++  ++     + ++  +L   L +   E    +  +  +R  +    ++L +L  + 
Sbjct: 37  IKKEADKVTASHKEKDQASQLIDKLENGEEEISEPVDPKERERQDQENLEKILDELATEA 96

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFR----------LLSRQKEEIEKQIAQVTA 607
                      A   D +    +      +                Q++ +E +I ++ A
Sbjct: 97  NKTSARLDEVNAQFADNKAARNEKQEALMQLNTKEELGELTEEELAQRQTLEAEIKELEA 156

Query: 608 KGEA--EKTAILISILHEVHI 626
            G+   E+   L + L ++  
Sbjct: 157 SGDTLLEEQLKLEAELKDIRK 177


>gi|291550458|emb|CBL26720.1| Predicted permease [Ruminococcus torques L2-14]
          Length = 1195

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 93/271 (34%), Gaps = 24/271 (8%)

Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR---DRLQQLFQ 437
             ++  + E    +     E  E    +   +  IK ++ +  Y +      +++ +  +
Sbjct: 209 YTEITVQVEGAKEATAFTKEYEEHVDSVLKKVQAIKAEREQARYDEITSTAQEKVDEAQE 268

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE----AALL----L 489
           +            ++               Q  L +G+     S  E      LL     
Sbjct: 269 ELAQAEQDLADGKEEAEEELASAREKLDAAQKELERGRNQLAASKLELEQSRNLLISKQK 328

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            L    A +++  QEL++ +     L  L + L     +++    +     + +    + 
Sbjct: 329 ELNQSKAQVEQGAQELSEKQI---ALTTLRNQLAQLKEQEESLEDQRQELLVQQTQMQQK 385

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-ALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             +L +   +    +   ++    + Q  +Q    L  ++ LL +  E ++++  +    
Sbjct: 386 KDELLKAKEELQQQAEDYQSAYQQIYQPLKQSYEELNTQYELLLQNYEALKEEYDRKQEA 445

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           GE +          E+  Q+ Q+E+++  +E
Sbjct: 446 GEEDP---------ELKAQLEQLEAEKTAME 467


>gi|302664936|ref|XP_003024092.1| hypothetical protein TRV_01761 [Trichophyton verrucosum HKI 0517]
 gi|291188122|gb|EFE43474.1| hypothetical protein TRV_01761 [Trichophyton verrucosum HKI 0517]
          Length = 1360

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 70/248 (28%), Gaps = 33/248 (13%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              ++ +L+ + +K   +                 +   Q+L +    + +       + 
Sbjct: 306 LDDLKTKLKIMEKKRAEDREKLKMVETYRTERDKFETIIQKLREKYQPQQQEITTLRKQL 365

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                 +     +  E    L     D    +++   + +++   K    E   +    +
Sbjct: 366 KEAEYRVEEVERLQAEHESILEMAALDREMAEEVAESIKAEYEALKIRTEELELEVEVLK 425

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY--------QQALALYKRFRLLSRQKE 596
              + L Q+      +       E     +R+          QQ   L  + + L  + +
Sbjct: 426 EENDQLGQVMSPEEKSSQGWLQMERTNERLREALIRLRDMTQQQEADLKDQIKDLEEELK 485

Query: 597 E------------------------IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ-I 631
           +                        +++Q+  + A+   E+         E   ++   I
Sbjct: 486 DYNNLKAQYESTKEKLLASEANMEDLKQQVEALGAEEMIEELTEKNMQYQEEVNELKAII 545

Query: 632 ESQEAMIE 639
           E  E++ E
Sbjct: 546 EDLESLKE 553



 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 70/226 (30%), Gaps = 22/226 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +    RL+ + Q+   +     +  ++  +  +         +  L+  + + +   ++
Sbjct: 455 LREALIRLRDMTQQQEADLKDQIKDLEEELKDYNNLKAQYESTKEKLLASEANMEDLKQQ 514

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-E 543
              L          +E  +EL +      E       +  D    K    E     +  E
Sbjct: 515 VEALG--------AEEMIEELTEKNMQYQEEVNELKAIIEDLESLKELNDELEINHIESE 566

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E +   +    +     +  +A I D+     +   L    +          +QI 
Sbjct: 567 KQLQEEIDFREGIYHEQNRKISQQDAVIEDLEYTLSKFRELVSTLQNDLEDMR-ASQQIT 625

Query: 604 QVTAKGEAEKTAILISILHEVHI------------QIHQIESQEAM 637
           +  A     ++  ++ +  ++              ++ ++E++E+ 
Sbjct: 626 ETEATDLTVRSRAMMDLNMKLQASAAKAQVKSMDLELGRMEAEESA 671


>gi|229087099|ref|ZP_04219249.1| hypothetical protein bcere0022_36710 [Bacillus cereus Rock3-44]
 gi|228696167|gb|EEL49002.1| hypothetical protein bcere0022_36710 [Bacillus cereus Rock3-44]
          Length = 786

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 55/162 (33%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R    
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDR 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A    K+   L R   E+++QI +   +
Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAEREWNEAEEHRKQSEKLHR---ELQRQIIEFNDE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIHELRQLRKAQLANVK 606


>gi|255077336|ref|XP_002502311.1| kinesin-like protein FLA8 [Micromonas sp. RCC299]
 gi|226517576|gb|ACO63569.1| kinesin-like protein FLA8 [Micromonas sp. RCC299]
          Length = 788

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/290 (8%), Positives = 92/290 (31%), Gaps = 22/290 (7%)

Query: 356 GEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            EDP   +    +    +L  +      D   + +  +           + + +    + 
Sbjct: 350 NEDPKDAMLREFQEEIARLKAQLGEGGYDPNARFDDRSFDGEPEFIEKTVVVEVDPDEDQ 409

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQK---YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           +    ++      + +R++    +      +     +   +  +  D +  ++       
Sbjct: 410 LAS--IKAQVQAEMAERVKFAASEADLERIQRQAEEKAQAEMQKVLDARDHTEEEKARIR 467

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
              + +      + ++  +       ++++ +E+        +  +L + +  +   +  
Sbjct: 468 QAMEENAMELDAQMSVAQSDRRRKEEIEKRLKEMESKLLHGVDDLELRNKMLEEAAAKGQ 527

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              E+      ER   E  +++++      L      +   +     ++   ++ +++  
Sbjct: 528 RDIED-----RERAKAEREREIEKLEEAKLLKEEKFASKKEEAADKTRKLKKMFGKYQTA 582

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
               EE    I +     E +     I +L        Q++ ++A+IE F
Sbjct: 583 KEDLEEHAAAIGR-----EKDDMMDSIRLLR------RQMKLKDAIIEAF 621



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 29/271 (10%), Positives = 82/271 (30%), Gaps = 23/271 (8%)

Query: 391 ENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            + +F+            KN  N  K ++  +    +  ++ + +L  +           
Sbjct: 323 ADYNFDETMSTLRYANRAKNIKNKPKINEDPKDAMLREFQEEIARLKAQLGEGGYDPNAR 382

Query: 450 WKKNARHRDQKGPSQ------RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           +   +   + +   +         +  L   K   +  + E             +Q Q +
Sbjct: 383 FDDRSFDGEPEFIEKTVVVEVDPDEDQLASIKAQVQAEMAERVKFAASEADLERIQRQAE 442

Query: 504 E---------LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
           E         L    +   E  ++   +  + +E    +      R  +    + LK+++
Sbjct: 443 EKAQAEMQKVLDARDHTEEEKARIRQAMEENAMELDAQMSVAQSDRRRKEEIEKRLKEME 502

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-SRQKEEIEKQ--IAQVTAKGEA 611
            ++             + +     Q+ +   +R +    R+ E++E+   + +     + 
Sbjct: 503 SKLLHGVDDLELRNKMLEEAAAKGQRDIEDRERAKAEREREIEKLEEAKLLKEEKFASKK 562

Query: 612 EKTAILISILHEV----HIQIHQIESQEAMI 638
           E+ A     L ++          +E   A I
Sbjct: 563 EEAADKTRKLKKMFGKYQTAKEDLEEHAAAI 593


>gi|224058328|ref|XP_002198508.1| PREDICTED: hook homolog 1 [Taeniopygia guttata]
          Length = 715

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 37/299 (12%), Positives = 97/299 (32%), Gaps = 23/299 (7%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D               ++  + 
Sbjct: 265 DDYRVHCEDLEKQLIELQHRNNELTSLAEESRALKDENDILRATADKASKLELTVEVYRK 324

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +       R +++ L +  +           +  +    +   +   +          + 
Sbjct: 325 KLQDLNDFRRQVKSLQETNMMYMHNTVSLEDELRKANAARAQLETYKKQVQELHNKLSEE 384

Query: 481 SLREAALLLTLIN----HPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLP 534
           S R   L   +      + A+++E+ + +          ++L           +      
Sbjct: 385 SKRADKLAFEMKRLEEKYEALMKEKERLIVQCDALRETNEELRCAQMQQDHLSQTGEKSH 444

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQ------ALALYKR 587
           E +   +    + E+  +L  + +   L    +E   I ++++  +Q       L   KR
Sbjct: 445 ENLAAEILPVEYREMFIRLQHENKMLLLKQEGSENERIAELQEELEQKHRTVNELETEKR 504

Query: 588 FRL-----LSRQKEEIEKQIAQVTAKGE-----AEKTAILISILHEVHIQIHQIESQEA 636
                   L +Q E+++K + +  +K E      +K A  +  L+EVH ++ + E+  A
Sbjct: 505 LNEERIGGLQQQIEDLQKTLQEQGSKTEGSSNLKQKLAAHMEKLNEVHDELQKKEADLA 563


>gi|198274508|ref|ZP_03207040.1| hypothetical protein BACPLE_00656 [Bacteroides plebeius DSM 17135]
 gi|198272562|gb|EDY96831.1| hypothetical protein BACPLE_00656 [Bacteroides plebeius DSM 17135]
          Length = 1370

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 72/222 (32%), Gaps = 23/222 (10%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           Q+ I +     R   K    +    P+   ++    + K        EA +   L+N   
Sbjct: 758 QQEIEKRQWEERNKGKKNNEKGVFKPTTTSIEQLPQEQKDLLSNMYSEAQV-KNLVNEEK 816

Query: 497 ILQEQYQELAD--IRYDNNEL---QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           IL+E+Y  L      Y + E    ++    +      ++         +  E+   EL  
Sbjct: 817 ILKEKYDALIAQLDDYKSREYTITKEWDEKIAQAAGNEELVDK---LTKGKEKALNELNA 873

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS--------RQKEEIEKQIA 603
           Q+  Q  +        +   +   +   Q +    +   L+         + ++ E +I 
Sbjct: 874 QMLMQSDEWVKLFGDLDNLTISEIENLIQIIKSKAKDLKLNPINLDKVLEKLKDAENEIK 933

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
                        L++ + E   +  + + + ++ E FG  S
Sbjct: 934 ------SRNPFRSLVTHIKEYQKEADKTKKKASLKEIFGDTS 969


>gi|56789966|gb|AAW30002.1| structure protein NSP5b3b [Homo sapiens]
          Length = 1068

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 89/280 (31%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   +    E+    
Sbjct: 496 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKMENGSLK 555

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   +    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 556 SHLQGEKQKATEASAVEQTAES--CEVQEMLKVARAEKDLLE--LSCNELRQELLKANGE 611

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 612 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 671

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + E    
Sbjct: 672 VEQHRAVKLHNNQLISELESSVIK----------LEEQKSDLERQLKTLTKQMKEETEEW 721

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 722 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 761


>gi|25150292|ref|NP_510092.2| MYOsin heavy chain structural genes family member (myo-2)
            [Caenorhabditis elegans]
 gi|55584154|sp|P12845|MYO2_CAEEL RecName: Full=Myosin-2; AltName: Full=Myosin heavy chain C; Short=MHC
            C
 gi|22265869|emb|CAA92183.2| C. elegans protein T18D3.4, confirmed by transcript evidence
            [Caenorhabditis elegans]
 gi|22265924|emb|CAA92197.2| C. elegans protein T18D3.4, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 1947

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/252 (9%), Positives = 78/252 (30%), Gaps = 12/252 (4%)

Query: 392  NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
                    +  +      +     K +  R    + +   + +L       +       K
Sbjct: 1600 ENHRKVHQQTIDSIQATLDSETKAKSELFR--VKKKLEADINELEIALDHANKANEDAQK 1657

Query: 452  KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
               R+ DQ    Q+ +     + +  ++  L     L         L  + + L   R  
Sbjct: 1658 NIRRYLDQIRELQQTVDEEQKRREEFREHLLAAERKLAVAKQEQEELIVKLEALERAR-- 1715

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--- 568
                + + S +            + +     +      +  L+  + +A    + +E   
Sbjct: 1716 ----RVVESSVKEHQEHNNELNSQNVALAAAKSQLDNEIALLNSDIAEAHTELSASEDRG 1771

Query: 569  -ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                 D  +  +      ++ + L R K+++E  +  +  + +A + A++      +   
Sbjct: 1772 RRAASDAAKLAEDLRHEQEQSQQLERFKKQLESAVKDLQERADAAEAAVMKGGAKAIQKA 1831

Query: 628  IHQIESQEAMIE 639
              ++++ ++ +E
Sbjct: 1832 EQRLKAFQSDLE 1843


>gi|71418928|ref|XP_811011.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70875627|gb|EAN89160.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 777

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 68/200 (34%), Gaps = 4/200 (2%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           + ++L           G            + P    +  +         P + E A +  
Sbjct: 521 KFEELLNPKRGFWQEEGDSVTIEVGIVLVETPKPLSLAKNASNKDKQTGPKVDEKA-MRQ 579

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           LI    + Q + +   ++     + +K    +     +  + L E       +R   EL 
Sbjct: 580 LIEDEKMAQMKKRIKQEMAKLTRDGEKARKDIAQRAAKGFHDLMERFKAE-KQRIAKELA 638

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           ++  R+ ++                +  ++   L K    LSR+K+E+ +   ++   G 
Sbjct: 639 ERERREQQERQRELEIIRQAQEQNAEMRRRIEELKKESVNLSREKKELTQATKELKKAG- 697

Query: 611 AEKTAILISILHEVHIQIHQ 630
            EK A  ++ ++E+   + Q
Sbjct: 698 -EKYAQELNAINEMKASLQQ 716


>gi|159116546|ref|XP_001708494.1| Protein 21.1 [Giardia lamblia ATCC 50803]
 gi|157436606|gb|EDO80820.1| Protein 21.1 [Giardia lamblia ATCC 50803]
          Length = 970

 Score = 41.0 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 38/382 (9%), Positives = 114/382 (29%), Gaps = 39/382 (10%)

Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYK 333
           ++L +  +D+  L     +   + L  ++T     ++      I  C D +    R    
Sbjct: 146 VLLRQFPLDLSELNHLEEKFRETGLSESITFIDRAVVRLEREAISRCKDCNYFKKRLEEA 205

Query: 334 AIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRE 389
             DL        +    +L S G  P    R   +    +L  ++        ++   + 
Sbjct: 206 RRDLGKQQRYCEDIKRVLLQSEGT-PLDAARAAMRAFKAELEEKTKIQDALNSELRLLKS 264

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYY--YSQAIRDRLQQLFQKYITEHSGYG 447
              RS     +       ++        + +R      + +  +++ L    ++  +   
Sbjct: 265 ESERSKRAVVQAETQMQEIREQYISGDGRTVRDMDRIIRELTTKIESLQADNLSLEATLQ 324

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
               +     ++       +           +    E           ++  +       
Sbjct: 325 NVRAQLHLRDERVLTISTQLAEQSRANSALARIHSLEKE------KCNSLESQVRSLQGS 378

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
           +       ++L   + S                  E+    L   + +   +   +    
Sbjct: 379 LHVLEESNEQLAGTVAS-----------------QEQSLNTLTTTVTQLATEKAEFMNIL 421

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIE---KQIAQVTAK------GEAEKTAILI 618
           EA   + ++  ++AL    +     R+ EE++     + +   +       + E++  L 
Sbjct: 422 EAGPPEYKEMQREALETSNQLYQSIRECEELQGTVNALREAEQEYLRIIQEKTEESMRLS 481

Query: 619 SILHEVHIQIHQIESQEAMIEG 640
           + + E+      ++++ +++EG
Sbjct: 482 ATIRELEADKVNLKAKISILEG 503


>gi|317419104|emb|CBN81142.1| Citron Rho-interacting kinase [Dicentrarchus labrax]
          Length = 1958

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 88/210 (41%), Gaps = 18/210 (8%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK-KPSLREAA 486
           +  +L    ++         +  ++ +R + +    + ++    V+ K S+ + S+ E  
Sbjct: 323 MEKKLHLKSRELQETQDKCHKMEQEISRFQRKMTDLESVLHQKDVELKASETQRSILEQD 382

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
           L   +    ++ +   +   ++  ++++  +L   +     + +    +E H +L E   
Sbjct: 383 LATYITECSSLKRSLEEARVEVSREDDKAMQLLHDIREQSNKLQEIKEQEYHAQLEE--M 440

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
              ++QL+  +  A   S   EA + D RQ  ++          L R+  E +++I +  
Sbjct: 441 QVTIRQLEEDLSAARRRSDLYEAELRDSRQTSEE----------LKRKAVEYQQRIQKAK 490

Query: 607 AKGEAEKTAILISILH----EVHIQIHQIE 632
            +G+A+    L+S L     E  ++I +++
Sbjct: 491 EQGKAD-VEELLSKLEKTNSEQQVKIQELQ 519


>gi|311268411|ref|XP_003132043.1| PREDICTED: myosin-8-like [Sus scrofa]
          Length = 1939

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 83/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1566 IQLELNQVKADVDRKIAEKDEEIEQLKRNHIRVVESMQSTLDAEIRSRNDALRVKKKMEG 1625

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1626 DLNEM-EIQLNHANRLAAESLRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAI 1678

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +    ++LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1679 VERRASLLQAEVEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLESD 1738

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1739 ISQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1798

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1799 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1830


>gi|304314688|ref|YP_003849835.1| DNA double-strand repair ATPase Rad50 [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588147|gb|ADL58522.1| predicted DNA double-strand repair ATPase Rad50
           [Methanothermobacter marburgensis str. Marburg]
          Length = 837

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 49/147 (33%), Gaps = 10/147 (6%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            +  + + +      EL +L   L     E      E  +++   +G    +K+ +R + 
Sbjct: 467 NKLLEAVREYMRSREELSRLRKDLKKKTTEYGKKKKELENKKEEIKGIESDIKENERIIS 526

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
           +     +       D+    ++    +        + E++EK+I ++  +   E    L 
Sbjct: 527 ELKDVESHFRKIEEDLEALLKREKNCFSELSASDSKIEDLEKRIHELNPETSREYGENLQ 586

Query: 619 S----------ILHEVHIQIHQIESQE 635
                         E+      ++++E
Sbjct: 587 KIEENATIIAEKKEEIKKNQEALKNRE 613


>gi|225180894|ref|ZP_03734342.1| SurA domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168375|gb|EEG77178.1| SurA domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 241

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 67/170 (39%), Gaps = 12/170 (7%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           ++L Q   +  +  +  ++ E   +  LIN   +LQE   +  DI+   +E+ +    + 
Sbjct: 66  EQLAQMQGMSLEDPETVTILENQAVEVLINEQLLLQEAENK--DIQISQSEIDEQIDQMK 123

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQ--LDRQV---RDAGLWSATTEANIVDVRQGY 578
           S F +   F      Q +      +L+++  L + V       +  +  E    ++ + Y
Sbjct: 124 SGFEDDGQFEEALAAQGVEIEELADLIREDMLIQAVFAETVPNISVSEDEITDEEINEVY 183

Query: 579 QQALALYKRFRLLSRQKEEIEKQ-----IAQVTAKGEAEKTAILISILHE 623
            Q   + +   +     EE+E +     I Q+    E +    L++ L E
Sbjct: 184 DQQQQMAEAQGMDLPPLEELEAEVVAFIIQQMQEAEEKQAIENLLAELRE 233


>gi|195118443|ref|XP_002003746.1| GI21363 [Drosophila mojavensis]
 gi|193914321|gb|EDW13188.1| GI21363 [Drosophila mojavensis]
          Length = 7182

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 94/302 (31%), Gaps = 19/302 (6%)

Query: 346  NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             +         +    ++         +L   SLP+++       +       +    + 
Sbjct: 6625 LQGRKAFEDSMKKMGDWLNEMETATESELRTTSLPVLEEQLAHYKKLL--QNAENMGGVI 6682

Query: 406  IHLKNCINHI------KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
              +      I       D+       + ++DR  ++ Q      +  G + KK    +++
Sbjct: 6683 NDVSEQGKSILPTLSNADKLKLNDDIKNMKDRYGRIKQTIDDRANTLGDHIKKYKDAKNR 6742

Query: 460  KGPSQRLMQSSLVK-GKLSKKPSLREAALLLTLINHPAILQEQYQ---ELADIRYDN-NE 514
                   + S   +  +L++    R   +   L  +  IL+E      ++ D++ D+  E
Sbjct: 6743 LADCSEFLSSIQQRMRELNRPIGSRIEDVQDLLGAYEGILKELKDSKHKMGDMQMDDLPE 6802

Query: 515  LQKLW---SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
            LQ +      +     +Q   L + +  R     F  L+ ++   +          E + 
Sbjct: 6803 LQSILAQQDDMIKLIEDQLAHLRQLLMLR---EQFIALINEIIAFIMKYTDVIIDIENSP 6859

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
              +     +   +  + +           +  ++ ++G A     +   L  +  Q+  +
Sbjct: 6860 DSLEDKINKYDNVIVKIQECEGLLASANDKGQKIASEGNAADKNSITEQLQSLKNQLQNL 6919

Query: 632  ES 633
              
Sbjct: 6920 RK 6921


>gi|114639175|ref|XP_001174394.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 1 [Pan
           troglodytes]
 gi|114639177|ref|XP_001174406.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 2 [Pan
           troglodytes]
          Length = 975

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 6/139 (4%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK-QLDRQ 556
           LQ+    L ++     E  K          + +  L   +  + C     E+L+ +L + 
Sbjct: 334 LQQLQDALNEL---TEEHSKSTQEWLEKQAQLEKELSAALQDKKCLEEKNEILQGKLSQL 390

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG--EAEKT 614
                           +V     Q   L K+     +  +  ++++  V A+G    ++ 
Sbjct: 391 EEHLSQLQDNPPQEKGEVLGDVLQVEELSKKLADSDQASKVQQQKLKAVQAQGGESQQEA 450

Query: 615 AILISILHEVHIQIHQIES 633
             L + L+E+  Q+ Q E 
Sbjct: 451 QRLQAQLNELQAQLSQKEQ 469


>gi|325856115|ref|ZP_08171967.1| Toprim domain protein [Prevotella denticola CRIS 18C-A]
 gi|325483672|gb|EGC86638.1| Toprim domain protein [Prevotella denticola CRIS 18C-A]
          Length = 687

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 84/300 (28%), Gaps = 5/300 (1%)

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + D ++++E         L    +++ H       +      + +           + + 
Sbjct: 82  KKDFVKVLETINR--DLQLNICIERKEHSNPHTMMMKPCKPTLVQPPNQLKKMEGKKWYK 139

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             +     K ++       D         ++   +   S++G+    G     +     Y
Sbjct: 140 LIEQSFNVKELDYWEQYGIDTKTLQRFHVKSLARYESVSNQGKPFTLGST--HEDPMFAY 197

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
                  ++     L   +G               +    + +  G  DVLSL   G   
Sbjct: 198 SMGKFVKVYRPKSKLRFLYGGEKVNDYVFGFQQLPSKGDVVFITGGEKDVLSLSAHGFNA 257

Query: 294 VVSSL-GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           +  +     + E  +  L      I++ +D D+ G+R A +  D +  + +    +    
Sbjct: 258 ICFNSETAQIPENIIEGLQLRFRHIIILYDSDETGIREAKRQTDELAQYKVLSLTLPLQG 317

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
               +D   F     +    K+++  +                   D   ++   +    
Sbjct: 318 GKSEKDISDFFALGNEAKDLKVLLNDMFTNMYAQTMMILQSCEIDYDNPPDVSKSVVAVN 377


>gi|302772230|ref|XP_002969533.1| hypothetical protein SELMODRAFT_170696 [Selaginella moellendorffii]
 gi|300163009|gb|EFJ29621.1| hypothetical protein SELMODRAFT_170696 [Selaginella moellendorffii]
          Length = 900

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 29/273 (10%), Positives = 88/273 (32%), Gaps = 12/273 (4%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                A  K + ++   V +              +   +     K  +       LR   
Sbjct: 252 EERLKAVLKEVEDAQGKVILFIDEVHLVLGAGRTEGSMDAANLFKPMLAR---GTLRCIG 308

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           +  + +     ++KY+ + + + R +++          +  +++    + +      + +
Sbjct: 309 ATTLAE-----YRKYVEKDAAFERRFQQVLVKEPSVPETISILRGLKERYEGHHGVRIMD 363

Query: 485 AALLLTL-INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            AL++   ++   I      +   I   +     +   L S   E      + I   +  
Sbjct: 364 RALVVAAQLSSRYIAGRHLPD-KAIDLVDEACANVRVQLDSQPEEIDKLERQRIQLEIEM 422

Query: 544 RGFGELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
               +   +  +             +  +  ++  YQ+      + R L +++EE++  +
Sbjct: 423 HALEKEKDKASKDRLVEVHQELDNLKEKLQPLKMRYQKEKERVDQLRRLKKKREELQISL 482

Query: 603 AQVTAKGEAEKTAIL-ISILHEVHIQIHQIESQ 634
            +   + +  + A +    L E+   I +IE +
Sbjct: 483 QEAERRMDLARAADIRYGGLQEIDAAIARIEKE 515


>gi|296132527|ref|YP_003639774.1| SMC domain protein [Thermincola sp. JR]
 gi|296031105|gb|ADG81873.1| SMC domain protein [Thermincola potens JR]
          Length = 980

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 56/170 (32%), Gaps = 25/170 (14%)

Query: 491 LINHPAILQEQYQELADIRYDNNELQ--KLWSFLFSDFVEQKYFLPEEIHQRLCE----- 543
            +  P++ ++++  +  +    +     +  + L  + + ++      +   + +     
Sbjct: 146 FLETPSLRKKKFDAILKVEQYRDAYLNTRAAAKLLDERMREQEKDLAVLAAEVQDYDAAK 205

Query: 544 ----------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                     R   E L+QL+ +V++        E     + +      AL      L +
Sbjct: 206 AQVQSLKTTIRELEETLQQLEGEVQNRAQKVTELERLKERLEKTEASLQALAATIEGLEQ 265

Query: 594 QKEEIEKQIAQVTAK----GEAEKTAILISILHE----VHIQIHQIESQE 635
           +++++ + +AQ          A         L E    +  Q  + E  E
Sbjct: 266 REKDLRENLAQAAQAYRIVRNAAPGYKAYLELQEKAKLLEKQKREKEGLE 315


>gi|289178112|gb|ADC85358.1| hypothetical protein BIF_00558 [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 574

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 91/297 (30%), Gaps = 23/297 (7%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ- 418
              +    K   + L+ ++    D + K      +    + R E E    +    + DQ 
Sbjct: 105 SQTLVNNAKLDAQHLVDDAQAKADTILKNAQSEANTIVTNARQEAEQLRASTAKTVSDQR 164

Query: 419 ----KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                      +  + RL     +   E +       K    + +    +     S    
Sbjct: 165 QALDLELTNSREEHKKRLASERAQQERELADLSAQTAKTISEQRKSANEEMARLKSETND 224

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++    +     L         ++ E  ++  +I    +  +     +       +    
Sbjct: 225 QIETALADANKKLADVREQVSKLMTEAQRKAGEI---TDAAKAHAQEITDAAEVNRTQTM 281

Query: 535 EEIHQRLCE-------------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
            +++  + +             +   ELL+ L+ + R +    A  E       +    A
Sbjct: 282 SQVNAEVEQIRADIAAQQDEATKKVQELLQSLE-ESRKSAKEEAEKEIGQAKQAREEADA 340

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            A  KR      +  EI ++  +  +K   ++     S L  +  +I +++++EA I
Sbjct: 341 YAAEKRESA-DTEAREIVRKAGEEASKQIEDRRKAAQSELDGLRKRIGELQTREADI 396


>gi|302909689|ref|XP_003050128.1| hypothetical protein NECHADRAFT_48571 [Nectria haematococca mpVI
           77-13-4]
 gi|256731065|gb|EEU44415.1| hypothetical protein NECHADRAFT_48571 [Nectria haematococca mpVI
           77-13-4]
          Length = 671

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 75/283 (26%), Gaps = 20/283 (7%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKR---ETENRSFNTPDERAELEIHLKNCINHI 415
           P S    Y K  FEK   E+   ++ L K              +         +     I
Sbjct: 168 PHSQSGKYWKEEFEKYHDEAKVEMEKLLKYKQLAKSYAKQKDAEASDLAVKLKEEQQKVI 227

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           + +K     +  I  +         +E           A     +           +K +
Sbjct: 228 EMEKQIAEGASRIASKRDDRSDDVNSELLSTLTKQTALAVQYRTRVQELEDQLEEFLKDR 287

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                S         L   P   +   +          EL+K  + +      +      
Sbjct: 288 EDDPDSKAGRR--RRLATSPRTQKTILE-------TQRELRKARAQVKELGELRDQVST- 337

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +  ++          ++          +    A   D+R   ++A    KR     RQ 
Sbjct: 338 -LRSQVRAAEKRASKAEMQTTAVPD---TPRESARAQDLRAQLREAREEAKRKDEEIRQL 393

Query: 596 EE---IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E     ++  +  A  +        S + E+  +I  +++ E
Sbjct: 394 KEEFEAYRKETEAQATDKNGVLERAHSKIAELKKEIRTLKTGE 436


>gi|254416553|ref|ZP_05030305.1| ATPase, AAA family [Microcoleus chthonoplastes PCC 7420]
 gi|196176757|gb|EDX71769.1| ATPase, AAA family [Microcoleus chthonoplastes PCC 7420]
          Length = 827

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 15/148 (10%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           I   A L+ ++Q +        E  ++   L   + +            + +       K
Sbjct: 329 IERDAALERRFQPIMVGEPSVEETIEILQGLRDAYEQHHRV-------EISDHALDAAAK 381

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR----FRLLSRQKEEIEKQIAQVTA 607
             DR + D        +  I  + +   +   ++ +     R + RQ  ++ K+  +   
Sbjct: 382 LSDRYISDR----FLPDKAIDLIDEAGSRVHLIHCQPSPATRDIKRQMRQVTKEKEEAVR 437

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQE 635
             + EK A L     E+  Q+  I   E
Sbjct: 438 LQDFEKAAQLRDREQELETQLQAILQAE 465


>gi|239916624|ref|YP_002956182.1| ATPase with chaperone activity, ATP-binding subunit [Micrococcus
           luteus NCTC 2665]
 gi|281414926|ref|ZP_06246668.1| ATPase with chaperone activity, ATP-binding subunit [Micrococcus
           luteus NCTC 2665]
 gi|239837831|gb|ACS29628.1| ATPase with chaperone activity, ATP-binding subunit [Micrococcus
           luteus NCTC 2665]
          Length = 875

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 62/173 (35%), Gaps = 8/173 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++K+I + +   R ++           +  +++    + ++     ++++AL+   +   
Sbjct: 324 YRKHIEKDAALERRFQTVMVEEPDVEDAISILRGLRERLEVFHGVRIQDSALVAAAVLSH 383

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF--------G 547
             + +++     I   +    +L + + S   E            + E            
Sbjct: 384 RYITDRFLPDKAIDLIDEACARLRTEIDSMPAELDELTRRVTRLEIEEAALSKETDTASK 443

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             L++L R++ D    + +  A     RQ  ++   L      L R+ EE E+
Sbjct: 444 NRLEELRRELADLKAEADSKRAQWEAERQAIRKVQELRSELERLRREAEEAER 496


>gi|168185970|ref|ZP_02620605.1| putative RecF/RecN/SMC N domain [Clostridium botulinum C str.
           Eklund]
 gi|169296094|gb|EDS78227.1| putative RecF/RecN/SMC N domain [Clostridium botulinum C str.
           Eklund]
          Length = 761

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 58/154 (37%), Gaps = 20/154 (12%)

Query: 494 HPAILQEQYQEL----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFGE 548
           +  +L++  ++L    ++I   + +L+KL         E   F   +  +R  + +    
Sbjct: 401 YKTLLEKYQEKLKVINSNIETSSKDLEKLKDEAQDLKEEIDNFKSTDTLERNRDYQDLKN 460

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            + +L+++++     +               Q   L  R   L  + EE+  Q+      
Sbjct: 461 QISELEQKLQQPVTVNN--------------QVQELKGRKSKLQFELEEVNSQLTYKEQN 506

Query: 609 GE-AEKTAILISILHEVHIQIHQIESQEAMIEGF 641
            +   +   L     ++  QI ++E QE + E F
Sbjct: 507 AKLKNRIQELQQEEKKLAQQIAELEGQEYLCEEF 540


>gi|114654479|ref|XP_510134.2| PREDICTED: Golgi autoantigen, golgin subfamily a, 5 isoform 6 [Pan
           troglodytes]
 gi|114654481|ref|XP_001148934.1| PREDICTED: Golgi autoantigen, golgin subfamily a, 5 isoform 5 [Pan
           troglodytes]
 gi|114654483|ref|XP_001148857.1| PREDICTED: golgin subfamily A member 5 isoform 4 [Pan troglodytes]
          Length = 731

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 78/269 (28%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK----LRYYYSQAIRDRLQ 433
           +      + K   +            LE         ++DQ     L+    Q +++RL 
Sbjct: 296 AKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTLQERLH 355

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 356 EADATLKREQESYKQMQSEFA---------ARLNKVEMERQNLAEAITLAER-------K 399

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    +   +    ++     L+     L     +        E++   L E    E L 
Sbjct: 400 YSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLD 459

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 460 SSTANSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHD 519

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   IE
Sbjct: 520 QIAGQKASK--QELETELERLKQEFHYIE 546


>gi|109947159|ref|YP_664387.1| hypothetical protein Hac_0572 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714380|emb|CAJ99388.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 811

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 30/300 (10%), Positives = 90/300 (30%), Gaps = 37/300 (12%)

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
           +   +              K     +         E+    +     I+D   +    + 
Sbjct: 309 QEYTDYFNERVETFSQRSLKMSETLQKILGQWNTKEILQAFERFKPFIQDFPQKQESLEK 368

Query: 428 IRDRLQQLFQKYITE---HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             +R++ L +K   E     G     +      +     +++ Q      ++      +E
Sbjct: 369 ALERIKGLLEKLQKEVVKKEGVKNKEEFQKTDEELSEIYKKIQQDVKETAEILSGKEQQE 428

Query: 485 AALLLTLINHPAIL---------------QEQYQELADIRYDNNELQKLWSFLFSDFV-- 527
             L    I+                    +E  ++L+     +  L++L + + +     
Sbjct: 429 EKLKKLKIDLREARIKKAKHDSYDLQKRQKEAERKLSVFDRGHERLERLLTKIDNQLKGL 488

Query: 528 -EQKYFLPEEIHQRLC---------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
            EQ+    E I+  L           + +  +L     +   A +  +  E N +     
Sbjct: 489 YEQERPDIEVINHYLKVFNLPQYSLNKDYQIVLNSKALEHSAAKMILSDGEKNTLAFAYF 548

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI--HQIESQE 635
             +    YK+        +++   I    +  + ++   +   +  ++ ++   +++++E
Sbjct: 549 LARLKLFYKKEN-----LKDLVIAIDDPVSSLDEQRIYNISDRVARINQELAEERLKNEE 603


>gi|45190844|ref|NP_985098.1| AER241Wp [Ashbya gossypii ATCC 10895]
 gi|44983886|gb|AAS52922.1| AER241Wp [Ashbya gossypii ATCC 10895]
          Length = 852

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 89/281 (31%), Gaps = 20/281 (7%)

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             ++  ++       ++ S      +  L+I              R       ++++ +L
Sbjct: 228 QATVSTLEKRLVEVKKDYSEKEHQYKMSLDIAKSENNRLTSSLSSREDALNEAQEKINRL 287

Query: 436 FQKYITEHSGYGR----YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
             +        G       K + +++  +    RL + +  +  L ++       +    
Sbjct: 288 MVQLEEFDHTSGSLLELEKKIDDKNQGIRNLETRLQELNFHRQDLERQLLTANETIEALK 347

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
             H    ++   +L  +  + +   +L   L     +++    +++ Q L ER   EL +
Sbjct: 348 KEHEEYREQNELKLTSLHKNTSGEDRLRKQLRDLAEDKEGL--QKLRQTLEERN-KELDE 404

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSRQKEEIEKQIAQVTAKG- 609
           +++             +  I + +Q  +   L   KR + L R+ EE+ +   Q+     
Sbjct: 405 RVEALESQVAAIEEDRQKIIGEQQQVVRNLKLEHQKRAQNLKREIEELRELNQQLEETNR 464

Query: 610 -----------EAEKTAILISILHEVHIQIHQIESQEAMIE 639
                       +         L     +I  ++     IE
Sbjct: 465 SYKKRFEHFSRNSPARKATQEELTAKDREIGALKRTIRDIE 505


>gi|47219440|emb|CAG10804.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 3812

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 79/238 (33%), Gaps = 14/238 (5%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
              D   E    +   +   +   +  +  Q + + L+        +             
Sbjct: 528 QDLDSAKEKVEQVSKSVISQESHHIELHRLQEVIENLKGELALAREDAQEMEAKHDSEIT 587

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
           +   K       + +++      + +  E      L +H   L    +EL    + N E 
Sbjct: 588 NYKIKLEMLEREKDAVLDRMAESQEAELERLRTQLLFSHEEELTGLREELQRENFLNTEN 647

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
                 L ++   +   + +E+       G+ + L   + +     L        I++++
Sbjct: 648 ------LLNEAAVRHERVTDELR-----AGYEKKLHLSENEKASCVLEREELLHQILELK 696

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +  + AL    +   L +Q +E++ ++ ++  +G  +      + + ++  +   +ES
Sbjct: 697 EDLKIALHS-SKADELVQQLQELQVELEELRKRGAKQAQME--NEMQQLAKKTEVLES 751



 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 57/157 (36%), Gaps = 16/157 (10%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL---CERGFGELLKQLDR 555
            +   E+ + +     L++    +     E +    E +  +L    E     L ++L R
Sbjct: 580 AKHDSEITNYKIKLEMLEREKDAVLDRMAESQEAELERLRTQLLFSHEEELTGLREELQR 639

Query: 556 Q-----VRDAGLWSATTEANIVDVRQGYQQALALYKRFRL--------LSRQKEEIEKQI 602
           +            +   E    ++R GY++ L L +  +         L  Q  E+++ +
Sbjct: 640 ENFLNTENLLNEAAVRHERVTDELRAGYEKKLHLSENEKASCVLEREELLHQILELKEDL 699

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                  +A++    +  L     ++ +  +++A +E
Sbjct: 700 KIALHSSKADELVQQLQELQVELEELRKRGAKQAQME 736



 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 70/236 (29%), Gaps = 21/236 (8%)

Query: 395  FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
                +        +++ +  +  Q     Y   I  RLQ   +K +   +      +  A
Sbjct: 1536 MKADESLKMSHQMIESLLLGVGSQLENEDYLVGISCRLQTALEKMLMVITDTSNQLEH-A 1594

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            R    +   +    +  + G L K+  L+E                  +  A  +     
Sbjct: 1595 RLTQTELMRESFRHNEEINGLLQKQEELQERL--------------TEEARAREQLALEL 1640

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             +     L   +  ++  L E++HQ   +  F   L+Q  +               + + 
Sbjct: 1641 HRA--EGLIDGYTGERAALEEQLHQ---KEEFRLNLEQELQVTSSRLHELEQERLQMQEE 1695

Query: 575  RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            R+   +      R     R+   +E  +         E+T  L+    EV  Q  +
Sbjct: 1696 RELLSRQQDA-MREHAGPRELRLVEAAMVAAPEADLLEETEKLMKEKVEVQRQAEK 1750


>gi|67472673|ref|XP_652128.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56468941|gb|EAL46742.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 579

 Score = 41.0 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 3/112 (2%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               E K F     ++        +  ++ +  + +        + +  D+++       
Sbjct: 337 EVIPENKSFDMMNFNEDEKREELNQAKQKKEELLEEKSRLEKEVQESSQDIKE-IDNIKE 395

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIES 633
           L      L R+  E++KQI  +  +     E+T  LI   +E+  QI+ ++ 
Sbjct: 396 LQSENEQLQREINEMKKQIQNIKEEKSKRDEETTRLIKENNEMKKQINDLKQ 447


>gi|332244039|ref|XP_003271177.1| PREDICTED: filamin-A-interacting protein 1 isoform 1 [Nomascus
           leucogenys]
          Length = 1213

 Score = 41.0 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 39/363 (10%), Positives = 101/363 (27%), Gaps = 20/363 (5%)

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           +   DV+ + +              +    ++L  L    +L  +             +L
Sbjct: 92  QAREDVIHMLKTEKTKPEVLEAHYGSAEPEKVLRVLHRDAILAQEKSIGEDVYEKPISEL 151

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRETENR 393
                        +L                   E    +    +    D     E E  
Sbjct: 152 DRLEEKQKETYRRMLEQLLL--AEKCHRRTVYELENEKHKHTDYMNKSDDFTNLLEQERE 209

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                 E+ +     K   N  +  KLR    +     L  + ++ +       +  K  
Sbjct: 210 RLKKLLEQEKAYQARKEKENAKRLNKLRDELVKLKSFALMLVDERQMHIEQLGLQSQKVQ 269

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
              +  +   ++L   +    +  +K    E       +      QE  +  A +    +
Sbjct: 270 DLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKALR---FSQEHEEMNAKLANQES 326

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR-QVRDAGLWSATTEANIV 572
             ++L   L       +       + +  E    EL  ++ + +  ++ L      A + 
Sbjct: 327 HNRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLM-----AEVE 381

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           ++R+   +     +       Q  E+ K++ +         +  L   + ++  ++ ++E
Sbjct: 382 NLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHH-----SKELKLEVEKLQKRMSELE 436

Query: 633 SQE 635
             E
Sbjct: 437 KLE 439


>gi|327541369|gb|EGF27909.1| protein disaggregation chaperone [Rhodopirellula baltica WH47]
          Length = 881

 Score = 41.0 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 74/216 (34%), Gaps = 7/216 (3%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y Q I ++   L +++     G        A  R  K   +      +    L    +
Sbjct: 318 DEYRQHI-EKDAALERRFQPVFVGEPNVEDTVAILRGLKPRYESHHGVRITDSALVAAAN 376

Query: 482 LREAALLLTLINHP--AILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538
           L +  +    +      ++ E    LA  +    E + +L   L    +  +  + E+  
Sbjct: 377 LSDRYIADRFLPDKAIDLIDEAASRLAMEKESVPEPIDRLQRRLRQLELVHRQLVDEQEA 436

Query: 539 QRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             + +R    E ++    ++        T +  + DV+   Q+   L  RF  L    +E
Sbjct: 437 SAVDKRVEVEEEMESAKAELASLKEQWETEKMGLDDVQSVRQEVDQLQHRFAQLDADAKE 496

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             KQ+   + +    +   + S L E+  +I + E 
Sbjct: 497 --KQLRGESPEDAYSEMLQVQSRLRELQARIDEAEK 530


>gi|304408644|ref|ZP_07390265.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS183]
 gi|307305473|ref|ZP_07585221.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica BA175]
 gi|304352465|gb|EFM16862.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS183]
 gi|306911776|gb|EFN42201.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica BA175]
          Length = 1270

 Score = 41.0 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 68/518 (13%), Positives = 151/518 (29%), Gaps = 30/518 (5%)

Query: 143 YLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG--LLIDGDNSATSYD 200
           +L+   + +  I++++L       +      R       +  E    L    ++      
Sbjct: 134 HLNTSDMTADDIKLYQLCGRIADIFDQYLVYRPDWILAWEQNEHPDSLTKPLNDDQRWQP 193

Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260
                LI   R    Q      R     + +  LN+P+T+L    + L+ F  +    Q 
Sbjct: 194 ILWRALIAFNRDELNQSHYH--RANLHSDLIAALNNPDTLLAKLPQRLFVFGISSMAPQT 251

Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI--V 318
                        I+L               +N          + QL  LW+    +   
Sbjct: 252 LEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQYAGKRQLAELWEDKLEVGNP 311

Query: 319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES 378
           L  +    G       ++L   H   G+ V          P S         ++ L +++
Sbjct: 312 LLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNSPHSHASMLHGVQYDILEMQT 371

Query: 379 LPL---VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
           L      D    +  ENR     D+ +       + +  +  + L  +  + + + +   
Sbjct: 372 LDRVLGPDAELYQNVENRRLLKRDDESIRVKSCHSPLREV--ETLHDHLLELLSNDVDLT 429

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL---- 491
            +  +        Y          K     +  +   +G   + P +     LL +    
Sbjct: 430 PKDIVVMMPDVAAYAPYIDAVFSAKQGLHYIPYAIADRGAAQESPLINSFLNLLGINQSR 489

Query: 492 --INHPAILQEQYQELADIRYDNNELQKLWSFL----FSDFVEQKYFLPEEIHQRLCERG 545
             +     + E    L   + D++ELQ +  +L         +++  L + +        
Sbjct: 490 FGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRDEQSRLKQGVPAFEQNSW 549

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK----- 600
              + + +                 +  +     QAL     F  +  +  +I       
Sbjct: 550 AFGIKRLILGYALSDDAPLYQDHLIVTGIEGQSAQALGKLLNFIEVLDETAQILALPQVG 609

Query: 601 --QIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQ 634
             ++A++T   +A  +        L E+   I  +E +
Sbjct: 610 ALRLAELTELLDAFYDTDEDEREQLQEIRDAIAALEQE 647


>gi|195048334|ref|XP_001992512.1| GH24162 [Drosophila grimshawi]
 gi|193893353|gb|EDV92219.1| GH24162 [Drosophila grimshawi]
          Length = 1164

 Score = 41.0 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 58/155 (37%), Gaps = 7/155 (4%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            +   EL  +R  + ELQ             +    ++   +  +      ++QL +Q+ 
Sbjct: 527 DDSSSELQLVRLQHEELQLAKDS--QHEQLLQQLQAKDKQLQQLQTQNQTEIEQLKQQMV 584

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI--AQVTAKGEAEKTAI 616
           +       +  +   ++      L   +    L  + E +++++   Q+      E+   
Sbjct: 585 ELHTQLQASTEHSEQLQANELVLLERMRCTDQLKSELEALQEEMKRRQLELAESKEQNVE 644

Query: 617 LISILHEVHIQIHQIESQ---EAMIEGFGKMSGRL 648
           L+S L E+  Q+ +++      A  E   ++S RL
Sbjct: 645 LMSQLAELQSQVKELKETPKDGADEESVNQLSERL 679


>gi|167754520|ref|ZP_02426647.1| hypothetical protein CLORAM_00021 [Clostridium ramosum DSM 1402]
 gi|237733841|ref|ZP_04564322.1| phosphodiesterase [Mollicutes bacterium D7]
 gi|167705352|gb|EDS19931.1| hypothetical protein CLORAM_00021 [Clostridium ramosum DSM 1402]
 gi|229383179|gb|EEO33270.1| phosphodiesterase [Coprobacillus sp. D7]
          Length = 518

 Score = 41.0 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/119 (10%), Positives = 38/119 (31%), Gaps = 4/119 (3%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           +   +     E       ++      +   + + +L+ ++          +  +      
Sbjct: 53  VKEAILDAKTEAYEL---KLQAEKEAKEQKQEINELENKLLQREQTVDRRDIAVQGKEDV 109

Query: 578 YQQ-ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             Q  + L +R   L + + E++++I     + E            E+  Q+ Q  + E
Sbjct: 110 LAQKVVQLDEREAGLGKLEAELKEKINAKIGELEKIAAMSANEAKQELFKQVEQQTATE 168


>gi|170099760|ref|XP_001881098.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164643777|gb|EDR08028.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 345

 Score = 41.0 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 61/155 (39%), Gaps = 12/155 (7%)

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           N+P   ++ ++         + L++L        +  K    E       +     L+++
Sbjct: 41  NNPDAARKFHELNQAYELLLDPLRRLA---LDAKLRVKQAKAERFKNY--DNKRKNLVEE 95

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           L+ + R+     A  +    +V + + Q   + +  R L  ++E + +   Q   + + E
Sbjct: 96  LEAKERE--YKKARVDKQKEEVDK-WHQTEKIKEEGRKLREERELLMRARQQQEPRADQE 152

Query: 613 KTA--ILISILHEVH--IQIHQIESQEAMIEGFGK 643
           +     L+ + +++    ++   ES  A++  FG 
Sbjct: 153 EDVPPALVRLKYKLKTHQELTTPESIAALLSPFGS 187


>gi|149729878|ref|XP_001496970.1| PREDICTED: DAZ interacting protein 1-like [Equus caballus]
          Length = 768

 Score = 41.0 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 71/215 (33%), Gaps = 8/215 (3%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            R      + + E     +         + +   +        + +  ++  L+EA +  
Sbjct: 186 QRRHAGTAEGMAEGKQKKQEQPVEEVLEELRAKLKWTQGELEAQREAERRRQLQEAEITR 245

Query: 490 T--LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              +       + + +E A +  + ++L+KL+   F         L E++          
Sbjct: 246 QREMEAKKDFDEWKEKERAKLYGEIDKLKKLFWDEFKTVANHNSTLEEKLQALQSHSVIE 305

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ----KEEIEKQIA 603
             L  L  +  +  L  A     + +      Q     +R + L  Q    K+E+++Q  
Sbjct: 306 SHLGSLRDEESEERLRQAQELQALKEKMD--VQKTEWKRRMKELQEQHAAQKKELQEQNE 363

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           ++ A    ++         ++     Q++ Q  +I
Sbjct: 364 RLQASLSQDQRKAAAQAQRQISALHAQLQEQARLI 398


>gi|238274|gb|AAB20215.1| myosin heavy chain [chickens, skeletal muscle, Peptide, 1938 aa]
          Length = 1938

 Score = 41.0 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 83/277 (29%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  +L   +    +       +      ELE   K     ++D +      
Sbjct: 1350 EEEQEAKGELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1409

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1410 NAKCASLEKTKQRLQNEVEDLMVDVERSNAACAALDKKQKNFDKILAEWKQKYEETQTEL 1469

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+  + L     E         
Sbjct: 1470 EASQKESRSLSTELFKMKNAYEESLDHLETLKRENKNLQQEIADLTEQIAEGGK------ 1523

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +A + +     +       R   L  +  +
Sbjct: 1524 -----------AVHELEKVKKHVEQEKSELQAALEEAEASLEHEEGKILR---LQLELNQ 1569

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            I+ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1570 IKSEIDRKIAEKDEEIDQLKRNHLRIVESMQSTLDAE 1606


>gi|302810123|ref|XP_002986753.1| hypothetical protein SELMODRAFT_124842 [Selaginella moellendorffii]
 gi|300145407|gb|EFJ12083.1| hypothetical protein SELMODRAFT_124842 [Selaginella moellendorffii]
          Length = 900

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 29/273 (10%), Positives = 90/273 (32%), Gaps = 12/273 (4%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                A  K + ++   V +              +   +     K  +       LR   
Sbjct: 252 EERLKAVLKEVEDAQGKVILFIDEVHLVLGAGRTEGSMDAANLFKPMLAR---GTLRCIG 308

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           +  + +     ++KY+ + + + R +++          +  +++    + +      + +
Sbjct: 309 ATTLAE-----YRKYVEKDAAFERRFQQVLVKEPSVPETISILRGLKERYEGHHGVRIMD 363

Query: 485 AALLLTL-INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            AL++   ++   I      +   I   +     +   L S   E      + I   +  
Sbjct: 364 RALVVAAQLSSRYIAGRHLPD-KAIDLVDEACANVRVQLDSQPEEIDKLERQRIQLEIEM 422

Query: 544 RGFGELLKQLDRQ-VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
               +   +  +  + +        +  +  ++  YQ+      + R L +++EE++  +
Sbjct: 423 HALEKEKDKASKDRLVEVHQELDNLKEKLQPLKMRYQKEKERVDQLRRLKKKREELQISL 482

Query: 603 AQVTAKGEAEKTAIL-ISILHEVHIQIHQIESQ 634
            +   + +  + A +    L E+   I +IE +
Sbjct: 483 QEAERRMDLARAADIRYGGLQEIDAAIARIEKE 515


>gi|294084668|ref|YP_003551426.1| chromosome segregation ATPase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664241|gb|ADE39342.1| Chromosome segregation ATPase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 1132

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 90/262 (34%), Gaps = 11/262 (4%)

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
            LW+ +   R  N  D  AE     +       D       ++A+ ++     Q   T  
Sbjct: 595 HLWRWDGFVRHANQNDRSAERIRQRRRLETLQTDAIKLGKDAEAMAEKTASAQQALDTNR 654

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           +      + +       G ++R  +S  +K    K+ +   AA L TLI    + + Q  
Sbjct: 655 AAVQHARQASIASEQSFGEARRRAESDALKLSAGKERATELAANLDTLIADIKVCETQLA 714

Query: 504 ELADIR-YDNNE--LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           EL D     + E   + +         +           RL E       ++L     + 
Sbjct: 715 ELGDETMLADQETSCRNMAEQARQTLNQAMQADT-----RLEE-ILRTADERLTSSSTEQ 768

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT--AILI 618
             W    +     V +   +     +  + L +   +IEK+  ++  + EA  T      
Sbjct: 769 TAWQRRLDGAASRVAELETRFENGKQEQQRLEQMPADIEKRRLEMGDRLEAANTARQEAS 828

Query: 619 SILHEVHIQIHQIESQEAMIEG 640
            +L +   Q+ ++E+ + + EG
Sbjct: 829 DLLIKAETQLGEVETAQRIAEG 850


>gi|225453941|ref|XP_002273779.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 924

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 31/321 (9%), Positives = 88/321 (27%), Gaps = 16/321 (4%)

Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRGED-PDSFIRCYGK-------TAFEKLIVESL 379
                  I+              ++    ED P +F++              +K   ES+
Sbjct: 109 AEDTRFQIESAAVSANHCKIYRKMVAYEDEDHPSAFLKDTSTNGTYLNWEKLKKNSPESM 168

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
                +                    +        +  ++         +          
Sbjct: 169 LHHGDIISFAAPPDHEIAFTFVYRDVLKSSPLNVAVP-KRKAEELRIENKRIKGIGIGAP 227

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
               S       + +    +K    +++    ++ +        E   L        +  
Sbjct: 228 EGPISLDDFRSLQRSNTELRKQLENQVLTIDTLQNENRAAIERHENVYLSIAARCTTLHL 287

Query: 500 EQYQELADI--RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
            + +EL ++  +   ++LQ+L   L     E          Q+       E L    +  
Sbjct: 288 REMKELKELVSKPYVDQLQELHHLLEVKQKELVEVNRILAEQKHAMSDLNERLSASMQSC 347

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE---KT 614
            +A     + +A+I  +     +     +R     +   +++  I +  ++ + E    +
Sbjct: 348 AEANEIMTSQKASISKLEARLDEEQD--QRMEEREKATADLKAAIHRAQSEAQEEIKRLS 405

Query: 615 AILISILHEVHIQIHQIESQE 635
            + +    E+   I++++  E
Sbjct: 406 EVALRRERELQEVINRLQESE 426


>gi|261419392|ref|YP_003253074.1| chromosome segregation protein SMC [Geobacillus sp. Y412MC61]
 gi|319766207|ref|YP_004131708.1| chromosome segregation protein SMC [Geobacillus sp. Y412MC52]
 gi|261375849|gb|ACX78592.1| chromosome segregation protein SMC [Geobacillus sp. Y412MC61]
 gi|317111073|gb|ADU93565.1| chromosome segregation protein SMC [Geobacillus sp. Y412MC52]
          Length = 1187

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    E +  +L E    E + +L+R V       A  EA    +++         +R +
Sbjct: 675 RNRELEMLSAKLQE--MDETIARLERAVAAKRHELAEQEAQAAALQEEVAALREALQRQK 732

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              R+ E  +K+I +  A  + EK       + E++ ++  I+ Q
Sbjct: 733 DEQRELEWQKKRIDERLALYDEEKANDE-REMAELNRRLGAIDRQ 776



 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 87/290 (30%), Gaps = 30/290 (10%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
             +         L  E     +                        L   +  I D   R 
Sbjct: 740  WQKKRIDERLALYDEEKANDEREMAEL-----NRRLGAIDRQLEQLAEKLQTIDDDISRL 794

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
               +      ++  Q  ITE        K+  +H  +K        +  ++G    +   
Sbjct: 795  QAQKQTEQTTKEALQAAITEQKIALAETKERVKHARRKVEEWEAELAETIRGLKEAE--- 851

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            RE A L   +  P   +E+ ++L   + ++ + + L   L +   EQ+    +   + L 
Sbjct: 852  RERAALDAEMEAPEWNEEEIEQLRKQKLEDKQ-KTL--ELIASRREQR-LDFQRRLEHLE 907

Query: 543  ER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-----------FR 589
            +         KQL   V+D  +     +  + ++    ++   L                
Sbjct: 908  QEWKETKRQHKQLADVVKDEEVKLNRLDVELENLLVRLREEYGLSFEAARSAYPLEIGAD 967

Query: 590  LLSRQKEEIEKQIAQVTAKG-----EAEKTAILISILHEVHIQIHQIESQ 634
               ++ + I++ + ++         E E+ +     L E    + + ++ 
Sbjct: 968  EARKRVKLIKRAMEELGTVNLGAIDEYERVSERHRFLSEQKTDLEEAKAT 1017


>gi|238505256|ref|XP_002383857.1| myosin type II heavy chain, putative [Aspergillus flavus NRRL3357]
 gi|220689971|gb|EED46321.1| myosin type II heavy chain, putative [Aspergillus flavus NRRL3357]
          Length = 2402

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 88/262 (33%), Gaps = 12/262 (4%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
               +       + +A LE   +  +   +    +    + +   L+ L      +     
Sbjct: 1045 EIIQRFEAEKHEMQAHLEEIDRRLLEAEQISAQKDGNIKELDQELKMLQSHLTLKDRKVQ 1104

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                K  +               L + K   K  + E   +   I+  ++    Y+E   
Sbjct: 1105 ELEAKLLKVDQDLDIKLANTSKELDQSKKQVKDLIDENRSIRQQISDLSVTSTGYEE--M 1162

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            +R   +E+  L + +     +++    E            + L++L  +        A  
Sbjct: 1163 LRRKESEMAVLRNDVRRHEEDKQQLETERTSLSTRHDNMQKRLRELQAETDAMRSEKAHL 1222

Query: 568  EANIVDVRQGYQQAL----ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA----ILIS 619
            E  + DV++   + +       +  +LL +Q  ++++Q+ Q  A    E+ +     +++
Sbjct: 1223 ERELTDVKKLLDEKISEDAEAVESRKLLEQQIHDLKEQLFQAQADLSRERQSRDDVQMLA 1282

Query: 620  I--LHEVHIQIHQIESQEAMIE 639
               L E+  +   +   + +IE
Sbjct: 1283 EHNLTELRDKYTSLNDSKIIIE 1304



 Score = 38.3 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 95/289 (32%), Gaps = 21/289 (7%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +        +        ++   + E E       +  + L   L++  +   ++ L   
Sbjct: 2018 KETSMEQTRQKYQREFSTLNNELEMEREKILKVRGE-NSRLREELEDLRSKWDNEVLNSS 2076

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                 + R++ + Q   T          +            R +++S+      +   L+
Sbjct: 2077 TWAKEKSRMEVMLQDVTTSRDEAVNAHNEAQSRVVTLLSQVRDLRTSVDDVTAERDMLLK 2136

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDN-----NELQKLWSFLFSDFVEQKYFLPEEIH 538
            E  +L   +       E+ +ELA     +     +  ++L   L S   +Q+      + 
Sbjct: 2137 EKKMLEVRLTE---AGERLEELAKGESPSMRNAASMNRELLE-LKSKLAQQEDVSAAAVG 2192

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKRFRL------- 590
            +          +++     R+A       +A +   +++   + + L  +          
Sbjct: 2193 KMRRADALVTEIQKEITAEREANAQLFKDKATLEKQLKESQLRCVDLETKSYSSGSQDVK 2252

Query: 591  -LSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQEA 636
             L ++ +++E  + +  AK  +E+     +   + ++  QI + E   A
Sbjct: 2253 FLHKRIKDLEAHLEEQEAKHSSEQRSLRNVDRTVKDLQSQIERREKINA 2301



 Score = 37.6 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 27/279 (9%), Positives = 78/279 (27%), Gaps = 7/279 (2%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +  +R                  D               D   +    L+   + ++ + 
Sbjct: 1160 EEMLRRKESEMAVLRNDVRRHEEDKQQLETERTSLSTRHDNMQKRLRELQAETDAMRSE- 1218

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             + +  + + D  + L +K   +            +  D K    +       + +    
Sbjct: 1219 -KAHLERELTDVKKLLDEKISEDAEAVESRKLLEQQIHDLKEQLFQAQADLSRERQSRDD 1277

Query: 480  PS-LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--E 536
               L E  L      + ++   +     ++    + L++      +    +K    E  +
Sbjct: 1278 VQMLAEHNLTELRDKYTSLNDSKIIIEKEMYIQQDTLRRATEARLAAEQSRKELQTELIK 1337

Query: 537  IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            +  R        L  + + +       +   ++   D+ +  +Q   +      LS + +
Sbjct: 1338 LRDRFTSVENARLNAEAEIERNIKNQANERLDSVRKDLDEKSRQVDEIEAERERLSIRVQ 1397

Query: 597  EIEKQIAQVT--AKGEAEKTAILISILHEVHIQIHQIES 633
            E+   IA+         +    L   L  +  ++   E+
Sbjct: 1398 ELTNAIAESDNFRIRHDQHKERLERELVTLKGRLTASEN 1436


>gi|242799042|ref|XP_002483293.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218716638|gb|EED16059.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 1390

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 47/395 (11%), Positives = 123/395 (31%), Gaps = 39/395 (9%)

Query: 285 SLCQAGVQNVVSSLGTALTEYQLRL-------LWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           S+ QA V    +S  TA     +         ++       +    D    R      + 
Sbjct: 560 SMHQASVAPSSASFATAYHSPMMEHTPMASPHMYPRRASTFVNGARDYYNGRMDRTLSNG 619

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397
                +   R+         D D     +     EK + +   ++D   +   + ++   
Sbjct: 620 SGNSHVHSQRMEKSNSHNNNDDDHQEHHHLMGRVEKAMPDITRMLDSFKETRQKLQAREA 679

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQ---AIRDRLQQLFQKYITEHSGYGRYWKKNA 454
              + + +            + L+    +      +   +  +   +         +K  
Sbjct: 680 EARQLQAQHEQAIMHKDFYIEALQGQMKKAATEAAEEYGKFREIISSLRVDISSQQEKIK 739

Query: 455 RHRDQKGPSQRLMQS-SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ-ELADIRYDN 512
             +D    S++  +    +K +L  +    +  +    ++H   L+E  + E  ++    
Sbjct: 740 ELQDYLDTSRKQNEDLESIKSELEAEIQTLQKRIEELQLDHERALEEAKEHERTELAMQK 799

Query: 513 NELQKLWSFL-----------FSDFVEQKYFLPEEIHQRLCER--GFGELLK-------- 551
            EL  L+  +           +++  ++     E +     E+  G  E+          
Sbjct: 800 EELTNLFEEIRTEDETAANERYNEREKELLDEQEALKSAWEEKHRGLEEVHANMKTEHEA 859

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQAL----ALYKRFRLLSRQKEEIEKQIAQVTA 607
            +  +  +     A  EA   D++      +     L  + + L   K E+E ++ ++  
Sbjct: 860 AIGEKHAELERTLAELEAAKNDLQTVRDSLVSKSEDLETKEKELETTKTELETKLQEIHK 919

Query: 608 KGEA--EKTAILISILHEVHIQIHQIESQEAMIEG 640
             +    K   L +   E+   + ++  ++A +EG
Sbjct: 920 AQDDLHYKQEELQATQAELQSTLEELVVKKAELEG 954


>gi|170594007|ref|XP_001901755.1| Myosin tail family protein [Brugia malayi]
 gi|158590699|gb|EDP29314.1| Myosin tail family protein [Brugia malayi]
          Length = 1986

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 89/280 (31%), Gaps = 15/280 (5%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
                  +K+  +++          T+    +  + R       +   + +++   +    
Sbjct: 1456 NSLDKKQKVFDKTVEEWKRKCDMLTQELEASQREVRGATTEAFR-LRSTVEETAEQVETL 1514

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            +     L +  +    +    G+   +  + + +    +  +Q +L          + E 
Sbjct: 1515 RRENKVLTEELKDVTDQLGEGGKSLHELQKQKRKLEMEKNELQQALD--DAESALEIEEN 1572

Query: 486  ALLLTLINHPAILQEQYQELAD--IRYDN--NELQKLWSFLFSDFVEQ--KYFLPEEIHQ 539
             +L   I    I  E  + + +    + N  N  Q+    + +    +         + +
Sbjct: 1573 KVLRAQIEISQIRSEIEKRITEKEEEFQNTRNNHQRTLESMQASLETETRGRADLLRMKK 1632

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            +L      EL   LD   R       T + +  +VR+   Q     ++   L  Q   IE
Sbjct: 1633 KLES-DITELEVALDHANRTNVDAQKTIKRHQDNVRELQTQIEDEQRQRDELREQMNVIE 1691

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++I  + ++        L   L +      Q E + A I+
Sbjct: 1692 RRIQILQSE-----KEELSDTLEQAERNRRQTEQEAADIK 1726


>gi|156374216|ref|XP_001629704.1| predicted protein [Nematostella vectensis]
 gi|156216710|gb|EDO37641.1| predicted protein [Nematostella vectensis]
          Length = 975

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 28/276 (10%), Positives = 75/276 (27%), Gaps = 19/276 (6%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              +   +  F+ L+ +       +   E + R         +           +K    
Sbjct: 647 EMWKDQQEELFQALLQQKEASHMKVLAEEWKRRDKEREILVTKKIEEYSQLEEKLKQSMA 706

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                + +    +    +   E            +   ++       Q  + + K+    
Sbjct: 707 DLEKRERLLSDNEAKVMRLKEELQRDHERKMTELKEAARRMKEDCAHQVEMERSKVRDLE 766

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             ++      L+      +++YQ+  +    + E              +     E    R
Sbjct: 767 QQKQR-----LVEQLYAAEKRYQDKENEFMTHKE--------RELSKPEVKLQSELDFLR 813

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +      L+  ++               +  ++Q  Q           L +Q++E+E 
Sbjct: 814 VEKAELERKLESSNKSKIHYKQQWGRALREVAKIKQQEQTVARAR-----LKKQEQELEH 868

Query: 601 QIAQVTAKGEAEKTAILIS-ILHEVHIQIHQIESQE 635
              +  A  E E         L E+  ++ ++  QE
Sbjct: 869 MRLRYLAAEEKEVVKATEKEELEEIKQELSRLRQQE 904


>gi|154314058|ref|XP_001556354.1| hypothetical protein BC1G_04972 [Botryotinia fuckeliana B05.10]
 gi|150849118|gb|EDN24311.1| hypothetical protein BC1G_04972 [Botryotinia fuckeliana B05.10]
          Length = 1701

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 72/254 (28%), Gaps = 11/254 (4%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
                       +    I  K  I  + D+  +      ++  +  L  +     SG  R
Sbjct: 386 HLSETLNTVQYAQRARAIQSKPRIQQVSDESDKQAVIDRLKAEVAFLRDQIKHSESGGDR 445

Query: 449 YWKKNARHRDQKGPSQ-RLMQSSLVKGKLSKKPSLREAALLLTLIN--HPAILQEQYQEL 505
             K  +   +++   +  L    L   +     S R A L+  L       +   Q  E 
Sbjct: 446 RSKPTSERPERQNEREVELHNQLLDTQENYTALSQRHAKLIAELARARDEEVADNQAHEN 505

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
                    L+   S  F++ VEQ     E+  Q L           L           A
Sbjct: 506 TLGDSATERLK--RSNSFAEAVEQVVLEYEKTIQSLEHS-LSNTRSSLSNTETQLLEKEA 562

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
                    +Q   +   L  R         ++E ++   T+  +          + E+ 
Sbjct: 563 KCAYAETVNQQLQARLQKLADREANTESYLHDLETRLEGHTSGEDKNSAI-----VMELR 617

Query: 626 IQIHQIESQEAMIE 639
            +I +I   EA  E
Sbjct: 618 KEIARIRENEATSE 631


>gi|126701284|ref|YP_001090181.1| replicative DNA helicase [Clostridium difficile 630]
 gi|254977317|ref|ZP_05273789.1| replicative DNA helicase [Clostridium difficile QCD-66c26]
 gi|255094648|ref|ZP_05324126.1| replicative DNA helicase [Clostridium difficile CIP 107932]
 gi|255102874|ref|ZP_05331851.1| replicative DNA helicase [Clostridium difficile QCD-63q42]
 gi|255308694|ref|ZP_05352865.1| replicative DNA helicase [Clostridium difficile ATCC 43255]
 gi|255316401|ref|ZP_05357984.1| replicative DNA helicase [Clostridium difficile QCD-76w55]
 gi|255519060|ref|ZP_05386736.1| replicative DNA helicase [Clostridium difficile QCD-97b34]
 gi|255652244|ref|ZP_05399146.1| replicative DNA helicase [Clostridium difficile QCD-37x79]
 gi|255657613|ref|ZP_05403022.1| replicative DNA helicase [Clostridium difficile QCD-23m63]
 gi|260685198|ref|YP_003216483.1| replicative DNA helicase [Clostridium difficile CD196]
 gi|260688857|ref|YP_003219991.1| replicative DNA helicase [Clostridium difficile R20291]
 gi|296452706|ref|ZP_06894397.1| replicative DNA helicase DnaB [Clostridium difficile NAP08]
 gi|296880040|ref|ZP_06904010.1| replicative DNA helicase DnaB [Clostridium difficile NAP07]
 gi|306521960|ref|ZP_07408307.1| replicative DNA helicase [Clostridium difficile QCD-32g58]
 gi|115252721|emb|CAJ70565.1| Replicative DNA helicase [Clostridium difficile]
 gi|260211361|emb|CBA66997.1| replicative DNA helicase [Clostridium difficile CD196]
 gi|260214874|emb|CBE07667.1| replicative DNA helicase [Clostridium difficile R20291]
 gi|296258488|gb|EFH05392.1| replicative DNA helicase DnaB [Clostridium difficile NAP08]
 gi|296429017|gb|EFH14894.1| replicative DNA helicase DnaB [Clostridium difficile NAP07]
          Length = 442

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 16/169 (9%), Positives = 62/169 (36%), Gaps = 12/169 (7%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E ++L +++     +    + +    +     + ++  + +   + +      + + L +
Sbjct: 15  EQSILGSILLDKDAIITVTETIKPDDFYKEAHKIIYECMITLSNKGEPIDLITLTEELRK 74

Query: 544 RGFGELLKQLDRQVRDAGLWSATTE----ANIVDVRQGYQQALALYKRFRLL-------- 591
           +G    +  +      + +   T+     A+IV  +   ++ +        L        
Sbjct: 75  QGHLNDIGGISYITSLSTIVPTTSNVKYYADIVKEKSVLRKLIKASNEIINLGYSGATKI 134

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
               E+ EK I  ++ +  ++    +  +L + +  I ++ + ++ + G
Sbjct: 135 EDVLEQAEKSIFDISQEKTSDDFKSINLVLMDAYDMIEKLYTNKSDVTG 183


>gi|109075207|ref|XP_001110512.1| PREDICTED: centromere-associated protein E-like isoform 1 [Macaca
            mulatta]
          Length = 2701

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 71/214 (33%), Gaps = 16/214 (7%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
              I +  + L                   +    K       +      +L K+   +  
Sbjct: 1802 DKISNMQKDLENSNAKLQEKIQELKANEHQLFKLKKDVNETQKKVSEMEQLKKQIKDQSL 1861

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L      +  + Q+ ++ L +++    E   L         E      +++ + L E  
Sbjct: 1862 TLSKIETENLNLAQKLHENLEEMKSVMKERDNLRR-----VEETLKLERDQLMESLQETK 1916

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQ 604
              +L  ++ ++++ A + S   +  I  +R+   +         + L + K+E++K+I +
Sbjct: 1917 ARDL--EIQQELKTAHMLSKEHKETIDKLREKILEKTTQISNIQKDLDKSKDELQKKIQE 1974

Query: 605  VTA--------KGEAEKTAILISILHEVHIQIHQ 630
            +          K +   +   I+ + ++  Q   
Sbjct: 1975 LQKKELHLLRMKEDVNMSHKKINEMEQLKKQFEA 2008


>gi|98986453|ref|NP_002461.2| myosin-3 [Homo sapiens]
 gi|251757455|sp|P11055|MYH3_HUMAN RecName: Full=Myosin-3; AltName: Full=Muscle embryonic myosin heavy
            chain; AltName: Full=Myosin heavy chain 3; AltName:
            Full=Myosin heavy chain, fast skeletal muscle, embryonic;
            AltName: Full=SMHCE
 gi|225000142|gb|AAI72385.1| Myosin, heavy chain 3, skeletal muscle, embryonic [synthetic
            construct]
          Length = 1940

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 84/265 (31%), Gaps = 17/265 (6%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +    +D     + E       + +  +E         ++ +       + +   L ++ 
Sbjct: 1568 QVKSEIDRKIAEKDEEIEQLKRNYQRTVETMQSALDAEVRSRNEAIRLKKKMEGDLNEIE 1627

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
             +    +       K     + Q   +Q  +  +L       +  L+E   L  +     
Sbjct: 1628 IQLSHANRQAAETLKHLRSVQGQLKDTQLHLDDAL-----RGQEDLKEQ--LAIVERRAN 1680

Query: 497  ILQEQYQELADIRYDNNELQKLW-SFLFS-----DFVEQKYFLPEEIHQRLCERGFGELL 550
            +LQ + +EL          +KL    L         +  +        ++L E    +L 
Sbjct: 1681 LLQAEVEELRATLEQTERARKLAEQELLDSNERVQLLHTQNTSLIHTKKKL-ETDLMQLQ 1739

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
             +++   RDA       +  I D     ++          L R K+ +E+ +  +  + +
Sbjct: 1740 SEVEDASRDARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLD 1799

Query: 611  AEKTAIL---ISILHEVHIQIHQIE 632
              +   L      + ++  +I ++E
Sbjct: 1800 EAEQLALKGGKKQIQKLETRIRELE 1824


>gi|34844|emb|CAA32167.1| unnamed protein product [Homo sapiens]
          Length = 1940

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 84/265 (31%), Gaps = 17/265 (6%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +    +D     + E       + +  +E         ++ +       + +   L ++ 
Sbjct: 1568 QVKSEIDRKIAEKDEEIEQLKRNYQRTVETMQSALDAEVRSRNEAIRLKKKMEGDLNEIE 1627

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
             +    +       K     + Q   +Q  +  +L       +  L+E   L  +     
Sbjct: 1628 IQLSHANRQAAETLKHLRSVQGQLKDTQLHLDDAL-----RGQEDLKEQ--LAIVERRAN 1680

Query: 497  ILQEQYQELADIRYDNNELQKLW-SFLFS-----DFVEQKYFLPEEIHQRLCERGFGELL 550
            +LQ + +EL          +KL    L         +  +        ++L E    +L 
Sbjct: 1681 LLQAEVEELRATLEQTERARKLAEQELLDSNERVQLLHTQNTSLIHTKKKL-ETDLMQLQ 1739

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
             +++   RDA       +  I D     ++          L R K+ +E+ +  +  + +
Sbjct: 1740 SEVEDASRDARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLD 1799

Query: 611  AEKTAIL---ISILHEVHIQIHQIE 632
              +   L      + ++  +I ++E
Sbjct: 1800 EAEQLALKGGKKQIQKLETRIRELE 1824


>gi|169780574|ref|XP_001824751.1| myosin type II heavy chain [Aspergillus oryzae RIB40]
 gi|83773491|dbj|BAE63618.1| unnamed protein product [Aspergillus oryzae]
          Length = 2402

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 88/262 (33%), Gaps = 12/262 (4%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
               +       + +A LE   +  +   +    +    + +   L+ L      +     
Sbjct: 1045 EIIQRFEAEKHEMQAHLEEIDRRLLEAEQISAQKDGNIKELDQELKMLQSHLTLKDRKVQ 1104

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                K  +               L + K   K  + E   +   I+  ++    Y+E   
Sbjct: 1105 ELEAKLLKVDQDLDIKLANTSKELDQSKKQVKDLIDENRSIRQQISDLSVTSTGYEE--M 1162

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            +R   +E+  L + +     +++    E            + L++L  +        A  
Sbjct: 1163 LRRKESEMAVLRNDVRRHEEDKQQLETERTSLSTRHDNMQKRLRELQAETDAMRSEKAHL 1222

Query: 568  EANIVDVRQGYQQAL----ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA----ILIS 619
            E  + DV++   + +       +  +LL +Q  ++++Q+ Q  A    E+ +     +++
Sbjct: 1223 ERELTDVKKLLDEKISEDAEAVESRKLLEQQIHDLKEQLFQAQADLSRERQSRDDVQMLA 1282

Query: 620  I--LHEVHIQIHQIESQEAMIE 639
               L E+  +   +   + +IE
Sbjct: 1283 EHNLTELRDKYTSLNDSKIIIE 1304



 Score = 38.3 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 95/289 (32%), Gaps = 21/289 (7%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +        +        ++   + E E       +  + L   L++  +   ++ L   
Sbjct: 2018 KETSMEQTRQKYQREFSTLNNELEMEREKILKVRGE-NSRLREELEDLRSKWDNEVLNSS 2076

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                 + R++ + Q   T          +            R +++S+      +   L+
Sbjct: 2077 TWAKEKSRMEVMLQDVTTSRDEAVNAHNEAQSRVVTLLSQVRDLRTSVDDVTAERDMLLK 2136

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDN-----NELQKLWSFLFSDFVEQKYFLPEEIH 538
            E  +L   +       E+ +ELA     +     +  ++L   L S   +Q+      + 
Sbjct: 2137 EKKMLEVRLTE---AGERLEELAKGESPSMRNAASMNRELLE-LKSKLAQQEDVSAAAVG 2192

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKRFRL------- 590
            +          +++     R+A       +A +   +++   + + L  +          
Sbjct: 2193 KMRRADALVTEIQKEITAEREANAQLFKDKATLEKQLKESQLRCVDLETKSYSSGSQDVK 2252

Query: 591  -LSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQEA 636
             L ++ +++E  + +  AK  +E+     +   + ++  QI + E   A
Sbjct: 2253 FLHKRIKDLEAHLEEQEAKHSSEQRSLRNVDRTVKDLQSQIERREKINA 2301



 Score = 37.6 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 27/279 (9%), Positives = 78/279 (27%), Gaps = 7/279 (2%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +  +R                  D               D   +    L+   + ++ + 
Sbjct: 1160 EEMLRRKESEMAVLRNDVRRHEEDKQQLETERTSLSTRHDNMQKRLRELQAETDAMRSE- 1218

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             + +  + + D  + L +K   +            +  D K    +       + +    
Sbjct: 1219 -KAHLERELTDVKKLLDEKISEDAEAVESRKLLEQQIHDLKEQLFQAQADLSRERQSRDD 1277

Query: 480  PS-LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--E 536
               L E  L      + ++   +     ++    + L++      +    +K    E  +
Sbjct: 1278 VQMLAEHNLTELRDKYTSLNDSKIIIEKEMYIQQDTLRRATEARLAAEQSRKELQTELIK 1337

Query: 537  IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            +  R        L  + + +       +   ++   D+ +  +Q   +      LS + +
Sbjct: 1338 LRDRFTSVENARLNAEAEIERNIKNQANERLDSVRKDLDEKSRQVDEIEAERERLSIRVQ 1397

Query: 597  EIEKQIAQVT--AKGEAEKTAILISILHEVHIQIHQIES 633
            E+   IA+         +    L   L  +  ++   E+
Sbjct: 1398 ELTNAIAESDNFRIRHDQHKERLERELVTLKGRLTASEN 1436


>gi|18401903|ref|NP_566611.1| AtCASP (Arabidopsis thaliana CCAAT-displacement protein
           alternatively spliced product)
 gi|85540967|sp|Q9LS42|CASP_ARATH RecName: Full=Protein CASP
 gi|15810373|gb|AAL07074.1| unknown protein [Arabidopsis thaliana]
 gi|23296990|gb|AAN13218.1| unknown protein [Arabidopsis thaliana]
 gi|332642581|gb|AEE76102.1| protein CASP [Arabidopsis thaliana]
          Length = 689

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 53/149 (35%), Gaps = 16/149 (10%)

Query: 494 HPAILQEQYQELADI----RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
             ++L+   +E+ +I    ++  N    ++  L+          P+              
Sbjct: 85  FNSLLKGYQEEVDNITKRAKFGENAFLNIYQKLYEA--------PDPFPALASIAEQDRK 136

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           L +++ + R   +           ++        L +R R L +Q EE  K++ ++  + 
Sbjct: 137 LSEVESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQMEEKIKEVVEIKQRN 196

Query: 610 EAEKTAILISIL----HEVHIQIHQIESQ 634
            AE+    + +L      +  Q+ Q +  
Sbjct: 197 LAEENQKTMELLKDREQALQDQLRQAKDS 225


>gi|297301944|ref|XP_001102472.2| PREDICTED: eukaryotic translation initiation factor 3 subunit
           A-like [Macaca mulatta]
          Length = 1231

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 439 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 496

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 497 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 538


>gi|297530631|ref|YP_003671906.1| chromosome segregation protein SMC [Geobacillus sp. C56-T3]
 gi|297253883|gb|ADI27329.1| chromosome segregation protein SMC [Geobacillus sp. C56-T3]
          Length = 1187

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    E +  +L E    E + +L+R V       A  EA    +++         +R +
Sbjct: 675 RNRELEMLSAKLQE--MDETIARLERAVAAKRHELAEQEAQAAALQEEVAALREALQRQK 732

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              R+ E  +K+I +  A  + EK       + E++ ++  I+ Q
Sbjct: 733 DEQRELEWQKKRIDERLALYDEEKANDE-REMAELNRRLGAIDRQ 776



 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 87/290 (30%), Gaps = 30/290 (10%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
             +         L  E     +                        L   +  I D   R 
Sbjct: 740  WQKKRIDERLALYDEEKANDEREMAEL-----NRRLGAIDRQLEQLAEKLQTIDDDISRL 794

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
               +      ++  Q  ITE        K+  +H  +K        +  ++G    +   
Sbjct: 795  QAQKQTEQTTKEALQAAITEQKIALAETKERVKHARRKVEEWEAELAETIRGLKEAE--- 851

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            RE A L   +  P   +E+ ++L   + ++ + + L   L +   EQ+    +   + L 
Sbjct: 852  RERAALDAEMEAPEWNEEEIEQLRKQKLEDKQ-KTL--ELIASRREQR-LDFQRRLEHLE 907

Query: 543  ER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-----------FR 589
            +         KQL   V+D  +     +  + ++    ++   L                
Sbjct: 908  QEWKETKRQHKQLADVVKDEEVKLNRLDVELENLLVRLREEYGLSFEAARSAYPLEIGAD 967

Query: 590  LLSRQKEEIEKQIAQVTAKG-----EAEKTAILISILHEVHIQIHQIESQ 634
               ++ + I++ + ++         E E+ +     L E    + + ++ 
Sbjct: 968  EARKRVKLIKRAMEELGTVNLGAIDEYERVSERHRFLSEQKTDLEEAKAT 1017


>gi|322419074|ref|YP_004198297.1| outer membrane chaperone Skp [Geobacter sp. M18]
 gi|320125461|gb|ADW13021.1| outer membrane chaperone Skp (OmpH) [Geobacter sp. M18]
          Length = 171

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 569 ANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           A   D+ +  +QA    K       R ++E+EK+ AQ++A+  AEK       L ++  +
Sbjct: 43  AARADLLKRTEQANNELKALLSEADRMRQELEKESAQLSAEARAEKQRQYQKKLRDIQNR 102

Query: 628 IHQIESQEAMIEG 640
             + + +   +EG
Sbjct: 103 QREAQEELKQVEG 115


>gi|222475723|ref|YP_002564244.1| SMC domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222454094|gb|ACM58358.1| SMC domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 926

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 55/147 (37%), Gaps = 10/147 (6%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--EIHQRLCERGFG----ELLKQ 552
            +     A +    + L+ L   L     +++    E  + ++ L +        E +++
Sbjct: 551 SDIEDAEARVDEVESTLEGLRGELEEYRSKKERLNDEIDDANEDLEDAEVRVNRVETVEE 610

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----RFRLLSRQKEEIEKQIAQVTAK 608
           L  +  +     +  E++I   ++  ++   L +    R   L    EE+E ++  + A+
Sbjct: 611 LLSEAVELHGRISELESDIDRHKENRERIGELRRTAYDRMSDLKEDVEELEAELGDLDAE 670

Query: 609 GEAEKTAILISILHEVHIQIHQIESQE 635
              +    +   L E    +   ES+E
Sbjct: 671 SIRDDINEIDDYLDEFRETLDGKESEE 697


>gi|119610406|gb|EAW90000.1| myosin, heavy polypeptide 3, skeletal muscle, embryonic, isoform
            CRA_b [Homo sapiens]
          Length = 1940

 Score = 41.0 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 84/265 (31%), Gaps = 17/265 (6%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +    +D     + E       + +  +E         ++ +       + +   L ++ 
Sbjct: 1568 QVKSEIDRKIAEKDEEIEQLKRNYQRTVETMQSALDAEVRSRNEAIRLKKKMEGDLNEIE 1627

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
             +    +       K     + Q   +Q  +  +L       +  L+E   L  +     
Sbjct: 1628 IQLSHANRQAAETLKHLRSVQGQLKDTQLHLDDAL-----RGQEDLKEQ--LAIVERRAN 1680

Query: 497  ILQEQYQELADIRYDNNELQKLW-SFLFS-----DFVEQKYFLPEEIHQRLCERGFGELL 550
            +LQ + +EL          +KL    L         +  +        ++L E    +L 
Sbjct: 1681 LLQAEVEELRATLEQTERARKLAEQELLDSNERVQLLHTQNTSLIHTKKKL-ETDLMQLQ 1739

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
             +++   RDA       +  I D     ++          L R K+ +E+ +  +  + +
Sbjct: 1740 SEVEDASRDARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLD 1799

Query: 611  AEKTAIL---ISILHEVHIQIHQIE 632
              +   L      + ++  +I ++E
Sbjct: 1800 EAEQLALKGGKKQIQKLETRIRELE 1824


>gi|333030548|ref|ZP_08458609.1| anti-sigma H sporulation factor, LonB [Bacteroides coprosuis DSM
           18011]
 gi|332741145|gb|EGJ71627.1| anti-sigma H sporulation factor, LonB [Bacteroides coprosuis DSM
           18011]
          Length = 826

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 14/121 (11%)

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L +       F  EE  + L      E   +L   +      +    +  +  R+   Q 
Sbjct: 196 LINFICTNLPFKIEEKLELLKVDSLKERANKLLIILNREVQLAEIKASIQLRTREDIDQ- 254

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
               ++   L +Q + I+ ++     +            + E+  +   ++  EA++E F
Sbjct: 255 ---QQKEYFLQQQIKTIQSELGSNNQE----------QEIEELRQKGQDMKWSEAVLEVF 301

Query: 642 G 642
            
Sbjct: 302 N 302


>gi|332708772|ref|ZP_08428743.1| multidrug resistance efflux pump [Lyngbya majuscula 3L]
 gi|332352314|gb|EGJ31883.1| multidrug resistance efflux pump [Lyngbya majuscula 3L]
          Length = 479

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 75/222 (33%), Gaps = 19/222 (8%)

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I D        Q  RD+L QL      + +      ++  +       ++R      ++ 
Sbjct: 103 IIDPSDLKQQLQQQRDKLAQL----KQQIAKITLLRQQRTQLETTAITAERTSLQQRLRD 158

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
             +  P L+   L   L  H ++ Q+               Q+L      D  +Q     
Sbjct: 159 TETLTPQLQNQGLTSILSQHRSLQQQLKDA---EELTPILQQRLAKQ--RDLQKQGAISS 213

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E I Q   +       ++  + + +        +    +++Q Y + +    +   +  +
Sbjct: 214 ERILQAEQD------YRETRQTISEIQAQLQQLQVQETELQQKYLENINSITQ---IKAE 264

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            E+++ +  Q+      E T    + + ++   I +++ + A
Sbjct: 265 LEKLDTRSKQLEQD-NLEATNTDNNQIQDIQQAIARLQKEVA 305


>gi|326672188|ref|XP_001919519.2| PREDICTED: serine/threonine-protein kinase TAO2-like [Danio rerio]
 gi|326672192|ref|XP_692709.4| PREDICTED: serine/threonine-protein kinase TAO2-like [Danio rerio]
          Length = 1121

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 94/313 (30%), Gaps = 42/313 (13%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD--- 417
             ++         L+       ++  ++       +  +   +L     N    +KD   
Sbjct: 590 ECLQQVQAEEEAGLLRRQRQYYELQGRQYKRKMLLSRHNLEQDLLREDLNKKQTLKDLEC 649

Query: 418 -QKLRYY-YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
              LR++  +Q +  R   L Q+   +        +   +    K   Q L Q   V+ +
Sbjct: 650 AMLLRHHESTQELEFRQLALVQRTRADLIRTQHQTELTNQMEYNKRREQELRQKHAVEVR 709

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              K    +   +                    +    + + L + L            +
Sbjct: 710 QQPKSLRSKELQIKRQFQD------------TCKIQTRQYKALRNHLLE---NTPKSDHK 754

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL---- 591
            + +RL +    +L    ++         +T    + + ++   Q L +  +  L     
Sbjct: 755 AVLKRLKDEQTRKLAILAEQYDHSINDMLSTQALRLDETQEAEYQVLRMQLQQELELLNA 814

Query: 592 -------------SRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                         R+ +++E+++     +  +   E+   L +   E    + + ++ E
Sbjct: 815 YQSKIKMHTDTQHEREGKDLEQRVSIRRALLEQRIEEEMLALQNERSERIRSLLERQASE 874

Query: 636 AMIEGFGKMSGRL 648
             IE F   S RL
Sbjct: 875 --IEAFDSESLRL 885


>gi|325114367|emb|CBZ49924.1| putative myosin heavy chain [Neospora caninum Liverpool]
          Length = 874

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 52/409 (12%), Positives = 119/409 (29%), Gaps = 39/409 (9%)

Query: 240 ILFHKGKNLYNFFG-----ALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
             F     L +        A              +SS  +  ++ + D +S         
Sbjct: 242 PGFAVQHVLKHLDLNWNSLASPGSIADSSGAGSTSSSRCMYTLQSFCDWVSTHGRLHTLT 301

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           ++                     +L  D    G+ AA  A+ +          ++  L  
Sbjct: 302 LAHCRLGNEGAACMTDVMTRNTSLLTVDLSHNGMGAAACALLVQAIEASNQTVLHVDLGG 361

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G             A E+    +     ++  + T        +E+ +L+   K  +  
Sbjct: 362 NG------ASYSSVDALERACARNRVNRHVVCLQRTGAELHAQREEQLKLQQLQKYVLQL 415

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
            K+  +R    Q    ++ +       E S      ++  R   +   S      +  K 
Sbjct: 416 EKEVTIR----QEEFGKIVEGMHADAAEASRRLAEAREEIRELKENLRSANFALVAEKKK 471

Query: 475 KLSKKPSLREAALLLTLINHPA-----ILQEQYQELADIRYDNNELQKLWS--------- 520
            L      +E   L  +++        +  +  Q   +      ELQ+L +         
Sbjct: 472 ALDTSNLKKEIQALQLVVSSREKEGAELRSQVNQLETETHLQAEELQRLRAKNQEVADAS 531

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ- 579
            L    ++      +++   L +R     ++ L ++V+      A  E+      +    
Sbjct: 532 LLTQQSLDDANVANKQLEAFLHQRESR--IEGLAQEVQQLRRELAAAESATDQQSKSLLA 589

Query: 580 -------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                  +   L ++   L R+++++E+Q   +    E E+       L
Sbjct: 590 QCQATQDENRKLEEKIYKLERERQQLEQQKTHLAWSLEKEERERDKRRL 638


>gi|301614285|ref|XP_002936622.1| PREDICTED: cytoplasmic dynein 1 heavy chain 1 isoform 1 [Xenopus
            (Silurana) tropicalis]
          Length = 4644

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 32/311 (10%), Positives = 101/311 (32%), Gaps = 22/311 (7%)

Query: 324  DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
            +        K  +L    +     +  +  +  +  +   R     + E  +  +     
Sbjct: 3179 NHYADLFNEKRSELEEQQMHLNVGLRKIKETVDQ-VEELRRDLRIKSQELEVKNAAANDK 3237

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
            +    + +  +        E++  L      I D+++      ++++ L Q+    I   
Sbjct: 3238 LKKMVKDQQEAEKKKVMSQEIQEQLHKQQAIIADKQM------SVKEDLDQVEPAVIEAQ 3291

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
            +      + +             ++ +L    L     + +   + T+     +      
Sbjct: 3292 NAVSSIKRHHLVEVKAMANPPAAVKLALESICLLLGEEMTDWKKIRTVF----LRDNFIS 3347

Query: 504  ELADIRYDNNEL-QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
             +  I ++  +L   +   +  +++    F  E +++       G ++K    Q+  A +
Sbjct: 3348 NI--INFNTEDLSDAIREKMKKNYLSNPSFNYELVNRA--SLACGPMVKWAIAQLNYADM 3403

Query: 563  WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
                      ++++    A    ++   + +   ++E  IA+       E+ A+LIS   
Sbjct: 3404 LKRVEPL-RNELQKLEDDAKDNQQKANEVEQMIRDLEASIARY-----KEEYAVLISEAQ 3457

Query: 623  EVHIQIHQIES 633
             +   +  +E+
Sbjct: 3458 AIKADLAAVEA 3468


>gi|297703729|ref|XP_002828779.1| PREDICTED: protein Hook homolog 2-like isoform 2 [Pongo abelii]
          Length = 719

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 23/262 (8%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  DE  +           +   + R    + +R +++QL ++         +   +  R
Sbjct: 295 DEMDELRQSSERAGQLEATLTSCRRRLGELRELRRQVRQLEERNAGHAERTRQLEDELRR 354

Query: 456 HRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLTL---INHPAILQEQYQELADIRYD 511
               +     +  Q   ++G+  ++    E  L         + ++ +E+ + LA+    
Sbjct: 355 AGSLRAQLEAQRRQVQELQGQRQEEAMKAEKWLFECRNLEEKYESVTKEKERLLAERDSL 414

Query: 512 NNELQKLWSFLFS---DFVEQKYFLP-----EEIHQRLCERGFGELLKQLDRQVRDAGLW 563
               ++L                  P     + +   +      E L +L  + +     
Sbjct: 415 REANEELCCAQLQPRGLTQADPSLDPTSPPVDNLAAEILPAELRETLLRLQLENKRLCRQ 474

Query: 564 SATTEANIVDVRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKGEAE 612
            A       ++++  ++A                +   L  Q E+++K + +   K E  
Sbjct: 475 EAADRERQEELQRHLEEANRARHGLETQHRLNQEQLSELRAQVEDLQKALQEQGGKTEDV 534

Query: 613 KTAILISILHEVHIQIHQIESQ 634
            + +L   L E   ++H+ + +
Sbjct: 535 SSILLKRKLEEHLQKLHEADLE 556


>gi|302497519|ref|XP_003010760.1| hypothetical protein ARB_03462 [Arthroderma benhamiae CBS 112371]
 gi|291174303|gb|EFE30120.1| hypothetical protein ARB_03462 [Arthroderma benhamiae CBS 112371]
          Length = 1007

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 90/302 (29%), Gaps = 13/302 (4%)

Query: 346 NRVNFVLLSRGEDPDSF--IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
              N +      DP  +     Y    F +  V   P +  L         +     R  
Sbjct: 123 MMANIIEPQSYPDPLDYNSWVGYTFYQFAEKEVRRNPNMYTLAAIFILVNYWLVRSARRS 182

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
                   +  +   K++    + I    +    +   E        ++ +R   ++ P 
Sbjct: 183 EVREELEAVKEVPIDKIKELRDELIAHNARLHLVEVKVEGLALADDQRRFSRTASRQIPQ 242

Query: 464 QRLMQSSLVKGKLSKKPSLR------EAALLLTLINH--PAILQEQYQELADIRYDNNEL 515
               + +  + + S            E   L   +      ++  +        + +  +
Sbjct: 243 VGESEQASTEAQTSPGILPASQPGKPEFDSLQEQLTEMRQDLVSLKSNSETRSEHLSENI 302

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQR---LCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
             + S +     E +      I      + +  F +L  +L           A + ++  
Sbjct: 303 ASVMSTIKELQKESESTSRTRIMNDAVSVKKSVFEDLKSELTPLSDRISDIEAYSSSSRG 362

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           ++ +   Q   + +   +L R+ E+++++++   A  + E +      L  V  QI ++ 
Sbjct: 363 ELGRFAIQVSQIMESINVLRREFEKVKRKLSAELASIKTEISREHKLELDAVEKQIIELR 422

Query: 633 SQ 634
             
Sbjct: 423 QT 424


>gi|256423011|ref|YP_003123664.1| ATP-dependent chaperone ClpB [Chitinophaga pinensis DSM 2588]
 gi|256037919|gb|ACU61463.1| ATP-dependent chaperone ClpB [Chitinophaga pinensis DSM 2588]
          Length = 871

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             L+ ++Q++     +  +   +   L   +    + L ++            ++  ++ 
Sbjct: 327 KALERRFQKVMVDEPNVEDAISILRGLKERYESHHHVLIKD----------EAIIAAVEL 376

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             R         +  I  + +    A  L      +  + +E+E++I Q+  + EA K  
Sbjct: 377 SHRYITDRFL-PDKAIDLIDES---AAKLRLEMNSMPEELDELERRIRQLEIEREAIKRE 432

Query: 616 ILISILHEVHIQIHQIESQ 634
                L E++ +I ++  Q
Sbjct: 433 NDEDKLRELNGEIARLGEQ 451


>gi|213971176|ref|ZP_03399294.1| peptidase, M23/M37 family [Pseudomonas syringae pv. tomato T1]
 gi|301382304|ref|ZP_07230722.1| peptidase, M23/M37 family protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058525|ref|ZP_07250066.1| peptidase, M23/M37 family protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302132192|ref|ZP_07258182.1| peptidase, M23/M37 family protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213924045|gb|EEB57622.1| peptidase, M23/M37 family [Pseudomonas syringae pv. tomato T1]
          Length = 440

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 70/209 (33%), Gaps = 11/209 (5%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            +L++  +    E        +K    + +K  S R+ Q  L+  +            L 
Sbjct: 66  GKLEKQVEVLQKELKKTEAELQKLDSEK-KKLNSARVEQQRLIAIQARAAYQSGRQEYLK 124

Query: 490 TLIN--HPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            L+N  HP         Y  L+  R    +L+     L       K    ++    + + 
Sbjct: 125 LLLNQQHPEKFARTLTYYDYLSQARL--EQLRNFNETLRQLANVGKEIDLQQAQLLVQKS 182

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                 ++L +  ++     A       D +   Q+  A  +    L++  + IE+ +A+
Sbjct: 183 NLDSQSEELAKVRQERQQALAKLN---QDYKARDQKLQARQQDQADLAKVLKTIEETLAR 239

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIES 633
              + E  +   L++       +  + E+
Sbjct: 240 QAREAEEARQKALVAAREAEEKRQREAEA 268


>gi|115910524|ref|XP_785821.2| PREDICTED: similar to TATA element modulatory factor 1
           [Strongylocentrotus purpuratus]
 gi|115963485|ref|XP_001197079.1| PREDICTED: similar to TATA element modulatory factor 1
           [Strongylocentrotus purpuratus]
          Length = 1176

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 28/265 (10%), Positives = 84/265 (31%), Gaps = 7/265 (2%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY-YSQAIRD 430
           ++   +S  +   L   E  + +     E+ E    L      +  Q+L+     + +R 
Sbjct: 602 DQFKKDSQKMQKALNDIEKSDVTGKVLAEKDEQISELMVEGEKLSKQQLQNSNVIKKLRA 661

Query: 431 RLQQLFQKYITEHSGYGRYWKKNAR-HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           + ++  +   ++         + +   +   G      +       L+     +E  +L 
Sbjct: 662 KEKETDRLLNSQKEQLDEAEARVSHLEQVLDGKEDVEKRQKDAIKTLNSAVEKQEKEILN 721

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                     +       +     E+ +L   + S   + +            E      
Sbjct: 722 LKSELEDGRDKVRSTQHALDASYKEIAELHRSIASKQSKVQETALSAEMNAKEELKLALD 781

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
             QL+ + +  GL     +  +   R   Q A    ++     ++  ++++++ +  A+ 
Sbjct: 782 RSQLEARRQHEGLLLQVNDLQLSLNRADQQNA----RKEDSFRQEISDLQQRLQESEAR- 836

Query: 610 EAEKTAILISILHEVHIQIHQIESQ 634
             E +  + +    +  QI  +++ 
Sbjct: 837 NQELSQSVTAATRPLLRQIENLQAT 861


>gi|311760|emb|CAA49165.1| fcrA [Streptococcus pyogenes]
          Length = 415

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 67/219 (30%), Gaps = 10/219 (4%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + +    + L +          +Y ++  + +       +    +L            E 
Sbjct: 94  KELSFLSKVLDEAAKKYRESSDKYKQEIGQLKAAAEAEAQKALDALNNKNKQISDLTNEN 153

Query: 486 ALLLTLIN-HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           A L   I  +   +Q   +E+A       EL  + S L +   E +    ++  +     
Sbjct: 154 AQLKEAIEGYVQTIQNASREIAA---KQQELAAVKSQLEAKNAEIEDLKQQDASKTEEIA 210

Query: 545 GFGELLKQLDRQVRDAGLW----SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                   L+  +  A        A  +    +  +   Q   L        R+  +++ 
Sbjct: 211 NLQSEAATLENLLGSAKHELTDLQAKLDTATAEKAKLESQETTLENLLGSAKRELTDLQA 270

Query: 601 QIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAM 637
           ++    A+ E    + A L   L     ++  ++++ A 
Sbjct: 271 KLDDANAEKEKLQSQAAALEKQLEATKKELADLQAKLAA 309


>gi|28869013|ref|NP_791632.1| hypothetical protein PSPTO_1807 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968659|ref|ZP_03396801.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|28852253|gb|AAO55327.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213926592|gb|EEB60145.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 125

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            Q   L  R +   RQ++E+ +Q+     + +      L     ++ +Q+ +
Sbjct: 28  NQIADLQLRLKDSERQRDELTQQLQNANPERDTALLTRLRQENQKLKLQLKE 79


>gi|308493301|ref|XP_003108840.1| CRE-ZYG-12 protein [Caenorhabditis remanei]
 gi|308247397|gb|EFO91349.1| CRE-ZYG-12 protein [Caenorhabditis remanei]
          Length = 753

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 85/269 (31%), Gaps = 15/269 (5%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           +S      + +   ++   +  + RA+   +  +     K +K        +     +L 
Sbjct: 341 QSSQKEFNMLRSHLDSAQSDVEEWRAKANQYQTDAELGKKREKEVKELQGQVSSLTSRLA 400

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
               T                     +   ++ ++      +     E  L+        
Sbjct: 401 HLIKTATEDEDNKAGIMQLRSQLGTITANNVELNVALESKQRIVEQLEIQLIQYKEKVKE 460

Query: 497 ILQEQYQELAD-IRYDNNEL-------QKLWSFLFSD--FVEQKYFLPEEIHQRLCERGF 546
           +   +   +A+    +N          + L   +F       + +    ++   +  +  
Sbjct: 461 LEDRKEDLIAERNELENQLHFKDQVTPRSLHESMFEAGNLSFEPFSEKSKLPLEIENKRL 520

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            E + +L+      G        N +      +Q L + K+   L RQ  E+++++A + 
Sbjct: 521 AERIHELEALEPLKGEIITMRSQNGL----LEEQKLVIKKQMEELERQVAELQEKLA-LN 575

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQE 635
            K  +  +  L   L + ++++ +++  E
Sbjct: 576 QKNASGDSVELRIQLEKANVEVERMKEAE 604


>gi|224062569|ref|XP_002197099.1| PREDICTED: similar to homer homolog 2 [Taeniopygia guttata]
          Length = 456

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 30/268 (11%), Positives = 74/268 (27%), Gaps = 28/268 (10%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            S    +M + + ++            +          +     ++   +      +   
Sbjct: 160 NSTITPNMTFTKTSQKFGQWADSRANTVFGLGFPSEQQLTKFAEKFQEVKEAAKLARDRS 219

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           Q+ I   S + +   +      +              G  ++     E   L   +   +
Sbjct: 220 QEKIETSSNHSQESGRETPSSTRASSVNGTDDEKASHGGPAEAHLKSENDKLKIALAQSS 279

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
              ++++          ELQ L                  +   L E      ++   +Q
Sbjct: 280 SNVKKWET---------ELQSLRE------------SNARLSTALQESAAS--IEHWKKQ 316

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA----- 611
                  +      I ++ +   +     +R   LSR+ +E+E ++     + E      
Sbjct: 317 FSACKEENDQLRGKIEELEEQCNEINKEKERNAQLSRRLQELETELQDKELELEELRKQG 376

Query: 612 EKTAILISILHEVHIQIHQIESQEAMIE 639
           E    L+S    V  Q+   E +   +E
Sbjct: 377 EIIPELMSECESVSEQLQAAEKKNKDLE 404


>gi|145699091|ref|NP_001005510.2| nesprin-2 [Mus musculus]
 gi|292630943|sp|Q6ZWQ0|SYNE2_MOUSE RecName: Full=Nesprin-2; AltName: Full=Nuclear envelope spectrin
            repeat protein 2; AltName: Full=Nucleus and actin
            connecting element protein; Short=Protein NUANCE;
            AltName: Full=Synaptic nuclear envelope protein 2;
            Short=Syne-2
          Length = 6874

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 87/279 (31%), Gaps = 18/279 (6%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P+         +   L       +   +      +  N  D  + ++ +L+ C    + +
Sbjct: 1799 PELSELKRQYASVSNLFNTKKNALQDHFATFLNEQCKNFNDWFSNVKTNLQECFEPPETK 1858

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                   Q + D L         +         K    +         ++S  ++ +  +
Sbjct: 1859 LSLEQRLQKLSDFLTLGGGNSKIQQVETVLQHVKMLLPKAHVKELDSWLRSQELELENME 1918

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                  A  L             +Q+L  +    ++ + L  +L +              
Sbjct: 1919 SICQARAGEL----------NNSFQQLLRLE---DDCRSLSKWLTNQEENWGKMEVSGER 1965

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
              L  +    L ++ ++    A L  +  E  + +  +  +++  L  R++ L RQ  EI
Sbjct: 1966 MDLFSQ---ALTRKREQFETVAQLSDSLKEHGLTEGEETIKESTHLIDRYQALWRQLHEI 2022

Query: 599  EKQ--IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            E++  +     +   +    +I  + E+   +  + S E
Sbjct: 2023 EEEDKLPAAEDQSFNDLADDVIHWIKEIKESLMALNSSE 2061


>gi|56205559|emb|CAI25527.1| myosin, heavy polypeptide 10, non-muscle [Mus musculus]
 gi|56206613|emb|CAI25575.1| myosin, heavy polypeptide 10, non-muscle [Mus musculus]
          Length = 2007

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 101/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 907  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 966

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 967  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEVLLLEDQNS 1026

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 1027 KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1080

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  QV +  +     E    +++    +        
Sbjct: 1081 RQELEKAKRKLDGETTDLQDQIAELQAQVDELKVQLTKKE---EELQGALARGDDETLHK 1137

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1138 NNALKVARELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1185



 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 83/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L   ++     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1422 EEAKKKLLKDVEALSQRLEEKVLAYDKLEKTKNRLQQELDDLTVDLDHQRQIVSNLEKKQ 1481

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1482 KKFDQLLAEEKGISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1536

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1537 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1596

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1597 EVNMQAMKAQFERDLQTRDEQNEEKKRLLLKQVRELEAELEDERKQRALAVASKKKMEID 1656

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1657 LKDLEAQIEA 1666


>gi|28375551|emb|CAD66599.1| SMC protein [Geobacillus stearothermophilus]
          Length = 1187

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    E +  +L E    E + +L+R V       A  EA    +++         +R +
Sbjct: 675 RNRELEMLSAKLQE--MDETIARLERAVAAKRHELAEQEAQAAALQEEVAALREALQRQK 732

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              R+ E  +K+I +  A  + EK       + E++ ++  I+ Q
Sbjct: 733 DEQRELEWQKKRIDERLALYDEEKANDE-REMAELNRRLGAIDRQ 776



 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 87/290 (30%), Gaps = 30/290 (10%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
             +         L  E     +                        L   +  I D   R 
Sbjct: 740  WQKKRIDERLALYDEEKANDEREMAEL-----NRRLGAIDRQLEQLAEKLQTIDDDISRL 794

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
               +      ++  Q  ITE        K+  +H  +K        +  ++G    +   
Sbjct: 795  QAQKQTEQTTKEALQAAITEQKIALAETKERVKHARRKVEEWEAELAETIRGLKEAE--- 851

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            RE A L   +  P   +E+ ++L   + ++ + + L   L +   EQ+    +   + L 
Sbjct: 852  RERAALDAEMEAPEWNEEEIEQLRKQKLEDKQ-KTL--ELIASRREQR-LDFQRRLEHLE 907

Query: 543  ER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-----------FR 589
            +         KQL   V+D  +     +  + ++    ++   L                
Sbjct: 908  QEWKETKRQHKQLADVVKDEEVKLNRLDVELENLLVRLREEYGLSFEAARSAYPLEIGAD 967

Query: 590  LLSRQKEEIEKQIAQVTAKG-----EAEKTAILISILHEVHIQIHQIESQ 634
               ++ + I++ + ++         E E+ +     L E    + + ++ 
Sbjct: 968  EARKRVKLIKRAMEELGTVNLGAIDEYERVSERHRFLSEQKTDLEEAKAT 1017


>gi|52865|emb|CAA32372.1| unnamed protein product [Mus musculus]
          Length = 574

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKVCNTKKEGDLLAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|71010532|ref|XP_758403.1| hypothetical protein UM02256.1 [Ustilago maydis 521]
 gi|46098145|gb|EAK83378.1| hypothetical protein UM02256.1 [Ustilago maydis 521]
          Length = 1539

 Score = 41.0 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 45/144 (31%), Gaps = 24/144 (16%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           ELQ +   L ++         E        +   +L+ + +R++           ++   
Sbjct: 643 ELQAVNQQLQAERQRADALDKEA-------QELADLVDEKEREIESLKPAQGAPPSSENH 695

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE-----------------KTAI 616
            +    Q   L           EEI+  + +   + + +                 +   
Sbjct: 696 EQDLRNQIQELRTLLNEKQEDLEEIQALLQREREQMQEQVQQAKAFSFETLDKIENERDE 755

Query: 617 LISILHEVHIQIHQIESQEAMIEG 640
            +  + E+  Q+ ++ S  A ++G
Sbjct: 756 ALERVRELQAQVSELTSSHADMDG 779



 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 78/257 (30%), Gaps = 39/257 (15%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS--- 481
           +Q + D + +  ++  +     G         +D +   Q L      K +  ++     
Sbjct: 665 AQELADLVDEKEREIESLKPAQGAPPSSENHEQDLRNQIQELRTLLNEKQEDLEEIQALL 724

Query: 482 LREAALLLTLINHPAILQ-EQYQELADI-RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            RE   +   +        E   ++ +        +++L + +            +    
Sbjct: 725 QREREQMQEQVQQAKAFSFETLDKIENERDEALERVRELQAQVSELTSSHADMDGDHAAL 784

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL--------- 590
           +L  R      + L  ++      ++  E+          +   L +R            
Sbjct: 785 QLRVRELQAETQSLREKLESTSQSTSQLESLREQTSTDAVRIRGLERRLNAANAQLAKGA 844

Query: 591 ----------------LSRQKEEIEKQIAQVTAKGEAEKT-------AILISILHEVHIQ 627
                           L  +  E +  IA++ A+ +AEKT          I++L     +
Sbjct: 845 NARDQSDQSQSMQLESLQNELREAQTYIAELEARVQAEKTLTTSSVQDQKIALLQRQKAE 904

Query: 628 IHQI--ESQEAMIEGFG 642
           + +   + +E + +G G
Sbjct: 905 LEERVEQYREMISKGVG 921


>gi|332284992|ref|YP_004416903.1| putative chromosome partition protein [Pusillimonas sp. T7-7]
 gi|330428945|gb|AEC20279.1| putative chromosome partition protein [Pusillimonas sp. T7-7]
          Length = 1174

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 59/472 (12%), Positives = 137/472 (29%), Gaps = 28/472 (5%)

Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229
           ++ ++++G  E  +    L   G      +              R ++     R L    
Sbjct: 500 QDDVQKQGALEPWLAHHELNSLGRLWQKLHIESGWETALEAV-LRERMAGLELRQLEHAR 558

Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289
           +      P  + F++         A   +Q         +     +L +   DV      
Sbjct: 559 AFASDAPPARLAFYQLPVPAPASVAPQGMQLLADLLRISDPDLRSLLNDWLADVYVCADV 618

Query: 290 GVQNVVSSLGTALTEYQLR--LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
                + S   A   Y ++   L           D +  GL A  + I+ +   L     
Sbjct: 619 DQALALRSSLPAGGMYVVQQGHLVDRHSIRFYAPDSEQEGLLARQQEIENLQRDLKARQL 678

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
           +    +      +S  +    +        +     +   +   ++     ++  E    
Sbjct: 679 IADEAIGEVSRAESAWQQVSSSLAPARQRVAELTRRLHDVQLEYSKLKQQAEQSDERAGR 738

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
           ++  +  IK        ++   +   +     + E     R+          +  +++  
Sbjct: 739 IREDLAEIKLHTEELMATKEEAEARFEELDVQLGE--HQMRFSDAEISGEGLQDQAEQAR 796

Query: 468 QSSLVKGKLSKKPSLREAAL---LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
           Q      +   +    E AL   +  L  +  + ++Q Q         +EL+ L   LF 
Sbjct: 797 QGLRDLERSVHESEYAERALQTRIADLKRNLQLARDQAQR------AQDELEGLQGELFE 850

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                     ++      ER     L +++     A L SA  E             +++
Sbjct: 851 LDASASQAGLQDALALRTEREQALNLARIELDNLAATLRSADEER------------VSM 898

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +       +  E+  Q+ +  A+   E+ A  +        Q+ Q+  Q+A
Sbjct: 899 ERSLEPRRARIMEL--QLQEQAARLAIEQFAEQLDEHQVDREQLRQLLEQQA 948


>gi|260590919|ref|ZP_05856377.1| toprim domain protein [Prevotella veroralis F0319]
 gi|260536784|gb|EEX19401.1| toprim domain protein [Prevotella veroralis F0319]
          Length = 687

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 82/300 (27%), Gaps = 5/300 (1%)

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + D + ++E         L    +++ H       +      + +           + + 
Sbjct: 82  RKDFVNVLETINR--DLQLNICIERKEHSNPHTMMMKPCKPTLVQPPNQLKKMEGKKWYK 139

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             +     K ++       D         ++   +   S++G+    G     +     Y
Sbjct: 140 LIEQSFNVKELDYWEQYGIDTKTLQRFHVKSLARYESVSNQGKPFTLGST--HEDPMFAY 197

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
                  ++     L   +G               +    + +  G  DVLSL   G   
Sbjct: 198 SMGKFVKVYRPKSKLRFLYGGEKVNDYVFGFQQLPSKGDVVFITGGEKDVLSLSAHGFNA 257

Query: 294 VVSSL-GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           +  +     + E  +  L      I++ +D D+ G+R A +  D +  + +    +    
Sbjct: 258 ICFNSETAQIPENIIEGLQLRFRHIIILYDSDETGIREAKRQTDALAQYKVLSLTLPLQG 317

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
               +D   F     +    K+++  +                   D   +    +    
Sbjct: 318 GKSEKDISDFFALGNEAKDLKVLLNDMFTNMYAQTMMILQSCEIDYDNPPDASKSVVAVN 377


>gi|254675265|ref|NP_958796.2| plectin isoform 1a [Mus musculus]
          Length = 4543

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1710 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1769

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1770 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1829

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1830 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1881

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1882 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1941

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1942 ELELGRIRSNAEDTMRSKEQAELEAARQR 1970



 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2243 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2302

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2303 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2362

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2363 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2422

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2423 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2477

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2478 QEQILQETQALQKSFLSEKDSLLQRERFIE 2507



 Score = 40.3 bits (92), Expect = 0.94,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2203 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2262

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2263 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2322

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2323 KAEAELLQQQKELAQEQA 2340



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1654 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1713

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1714 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1772



 Score = 37.2 bits (84), Expect = 7.9,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1204 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1263

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1264 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1320

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1321 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1377

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1378 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1437

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1438 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1470


>gi|254675253|ref|NP_958793.2| plectin isoform 1b [Mus musculus]
          Length = 4543

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1710 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1769

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1770 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1829

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1830 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1881

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1882 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1941

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1942 ELELGRIRSNAEDTMRSKEQAELEAARQR 1970



 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2243 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2302

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2303 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2362

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2363 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2422

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2423 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2477

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2478 QEQILQETQALQKSFLSEKDSLLQRERFIE 2507



 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2203 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2262

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2263 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2322

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2323 KAEAELLQQQKELAQEQA 2340



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1654 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1713

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1714 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1772



 Score = 37.6 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1204 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1263

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1264 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1320

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1321 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1377

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1378 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1437

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1438 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1470


>gi|254675117|ref|NP_001157014.1| plectin isoform 1c2alpha3alpha [Mus musculus]
          Length = 4589

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1756 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1815

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1816 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1875

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1876 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1927

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1928 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1987

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1988 ELELGRIRSNAEDTMRSKEQAELEAARQR 2016



 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2289 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2348

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2349 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2408

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2409 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2468

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2469 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2523

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2524 QEQILQETQALQKSFLSEKDSLLQRERFIE 2553



 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2249 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2308

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2309 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2368

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2369 KAEAELLQQQKELAQEQA 2386



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1700 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1759

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1760 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1818



 Score = 37.2 bits (84), Expect = 7.9,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1250 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1309

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1310 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1366

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1367 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1423

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1424 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1483

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1484 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1516


>gi|300362666|ref|ZP_07058842.1| replicative DNA helicase DnaB [Lactobacillus gasseri JV-V03]
 gi|300353657|gb|EFJ69529.1| replicative DNA helicase DnaB [Lactobacillus gasseri JV-V03]
          Length = 457

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 10/144 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +     S  E A+L  +   P  + +    L    +  +  + ++  + +    ++   
Sbjct: 6   SQQIPHDSEAEKAVLGAVFLDPEAIIDASDILQPDDFYEHANRIVFQAMLNISDREEVID 65

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  +   L +            QV D G  +  TE ++      +    A   + + + R
Sbjct: 66  PVTLQDELKKN----------NQVDDIGGIAYVTELSMATPTAAHVTYYAKIVKRKAILR 115

Query: 594 QKEEIEKQIAQVTAKGEAEKTAIL 617
                 ++I Q   +G  + T IL
Sbjct: 116 NLISTSQRIIQNAIEGSDDVTDIL 139


>gi|194220964|ref|XP_001502304.2| PREDICTED: similar to Rho-associated kinase [Equus caballus]
          Length = 1145

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 39/288 (13%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
           + E     +     E +        E  +        +  ++DQ     Y         +
Sbjct: 579 MSEKQLKQENNHLMEMKMSLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 638

Query: 427 AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
            +++      +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 639 ELKEECEEKTKLCKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 698

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 699 EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 750

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
            +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 751 NKLKDA--QEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 808

Query: 594 -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 809 SDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 853


>gi|194014177|ref|ZP_03052794.1| YhaN [Bacillus pumilus ATCC 7061]
 gi|194013203|gb|EDW22768.1| YhaN [Bacillus pumilus ATCC 7061]
          Length = 929

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 93/288 (32%), Gaps = 27/288 (9%)

Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
           ++  +    GED     +    +A   +  + L    ++ + E          ++ E + 
Sbjct: 485 QMRPMKQRSGEDALDSFQVQAASAETLMRQKELLYERIIRQYEDWELELEPVQQQVEEKK 544

Query: 407 HLKNCINHIKDQKLRYYYSQAIR------DRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
                 + +      ++  + ++      + LQ+       + S Y R     +     K
Sbjct: 545 RQLGLSSELSFLVEAFHILKQLKMNTAAYEELQREIDMLSDKQSVYERKVSALSSLLQNK 604

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
             + +   S+  +    +    +E   L   I H        Q+L+ +  +    +K   
Sbjct: 605 EGTIQENISAFQEILKDEAKREKERQTLHVSIQH------AMQQLSTLEGEIQYYEKQTD 658

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            LF     +     + +      + + + L +L +  ++        E           +
Sbjct: 659 ELFRQVEAESKEDYQVLSHL--SKEYRKRLSELQQLNQELHRSGCFDE-----------E 705

Query: 581 ALALYKRFRLLSRQKEEIEKQI--AQVTAKGEAEKTAILISILHEVHI 626
              ++K   LL  +  E ++ +   Q+ A+   ++ A L   + ++  
Sbjct: 706 EWIVHKGLPLLEEEYAEAKQHLHDVQLNAENMEKRLAELAVEIRQIEA 753


>gi|170289417|ref|YP_001739655.1| chromosome segregation protein SMC [Thermotoga sp. RQ2]
 gi|281412999|ref|YP_003347078.1| chromosome segregation protein SMC [Thermotoga naphthophila RKU-10]
 gi|170176920|gb|ACB09972.1| chromosome segregation protein SMC [Thermotoga sp. RQ2]
 gi|281374102|gb|ADA67664.1| chromosome segregation protein SMC [Thermotoga naphthophila RKU-10]
          Length = 1170

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 76/227 (33%), Gaps = 24/227 (10%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + I D L +       E         +  +     G     +       KL       E 
Sbjct: 794  KKILDELNEKIFTLRAEVGNLLETKDRYEKEMRDTGKMIERIARETEDIKLQMTSLEEE- 852

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF--LFSDFVEQKYFLPEEIHQRLCE 543
                 + N+   ++E  +E+  ++    E+  ++    L     E+K    +E+  R+ E
Sbjct: 853  -----MENYRKFIREHEREIEHLK---KEMDSVFEAMKLHRSGKEEKMRELQEVENRMNE 904

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-----QQALALYKRFRLLSRQKEEI 598
                E  ++L   +    L    T   I ++ + +            ++   + RQ +++
Sbjct: 905  --LKEEKERLRNHLHQIDLALQETRLKIANLLEEFSGNEEDVEELGEEQLEEVYRQIKDL 962

Query: 599  EKQIA-----QVTAKGEAEKTAILISILHEVHIQIHQIE-SQEAMIE 639
            E +I       +TA  E EK       + +    + + +   E +IE
Sbjct: 963  ENKIKYLGPVDLTAIDEYEKLREEYEEILKQKEDLEEAKRKLEEIIE 1009



 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 99/251 (39%), Gaps = 12/251 (4%)

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR-LQQLFQKYITEHSG 445
           +R          +E  +     ++ +  +K ++      + +  R L +L +K  +  + 
Sbjct: 667 RRIKLKHLEQEMEETEKQIEEKRDELASLKTEQENLKNQEKLVQRELFELSRKSSSTKTV 726

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY-QE 504
                +   + +++    ++L+     K +       +    +  L  +   LQ+   + 
Sbjct: 727 LSEILRSINQLQEEVENLEKLLVEYRAKEEGLNARREKIFEEIDELKQNRENLQKSLTEY 786

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
             ++  +   L +L   +F+   E    L  +       R  G++++++ R+  D  L  
Sbjct: 787 SEELEKEKKILDELNEKIFTLRAEVGNLLETKDRYEKEMRDTGKMIERIARETEDIKLQM 846

Query: 565 ATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
                ++ +  + Y++ +  ++R    L ++ + + + +  +   G+ EK    +  L E
Sbjct: 847 ----TSLEEEMENYRKFIREHEREIEHLKKEMDSVFEAMK-LHRSGKEEK----MRELQE 897

Query: 624 VHIQIHQIESQ 634
           V  ++++++ +
Sbjct: 898 VENRMNELKEE 908



 Score = 37.6 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 94/283 (33%), Gaps = 20/283 (7%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            F +   K   EK+      LV++  K  T    F   D+  E    L       ++  +
Sbjct: 235 EFYQEEEKKTNEKIKNIQKELVELETKWSTLRSEFGEMDQEIERYTKLLEDYKKRQNDLV 294

Query: 421 --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             + +YS  + D   +  +          R  +   R  + +   + +M     K K  +
Sbjct: 295 EMKGFYSSKLADSENRYVELSTRLDELEKRREEYKKRLEEMEYIFKGVMGDYERKAKELE 354

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +    +  LL               E++ +     ++ KL + L       +        
Sbjct: 355 EFEKEKENLLSRFSEKEKEFLRVRDEISKLE---KQILKLENELLRIGETLEDLEK---R 408

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           +++ E       ++L+ +  +    S   E    + R+       L +    +  + EEI
Sbjct: 409 RKITENQILTRRRELEDKKSEFKEISKRVEELDEEERK-------LTEELNAVRERLEEI 461

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           E +I +V  + +A++       L E+  +   IE       GF
Sbjct: 462 EGEIRRVNLEIDAKE-----KRLREIQFEKEMIERDMREYRGF 499


>gi|156042388|ref|XP_001587751.1| hypothetical protein SS1G_10991 [Sclerotinia sclerotiorum 1980]
 gi|154695378|gb|EDN95116.1| hypothetical protein SS1G_10991 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1484

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 86/267 (32%), Gaps = 35/267 (13%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            E ++   N       L   ++   N ++D        + +R+R Q L Q+Y  +     
Sbjct: 416 EELQDELANKSITTKGLSRQIEEKANRLQDD------LEDLRERHQNLEQQYAEKTREVK 469

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
           +  ++    R      ++ +   L   +     +++E   L T +     LQ  +Q+  D
Sbjct: 470 KMQERLEDLRRDSEMKEQNLHDKLEHVENDLDQTIQERKALATRLESLQGLQRDFQQRND 529

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
                         L     +        +   L +     L+++L+ ++      +   
Sbjct: 530 E-----------KNLLQGRHDALTAESASLQADLAQA--KALIEELEDKLEHEKTLAL-- 574

Query: 568 EANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE--- 623
             N  DVR  Y + +  L      L  +  E E+         E EK  +          
Sbjct: 575 -GNARDVRNQYTEEIDRLNNEVEDLKAEIREKERLYDDDIESWETEKRNLETQRARAEEQ 633

Query: 624 ---VHIQIHQIESQEAMIEGFGKMSGR 647
              +   I +++  E      G +SGR
Sbjct: 634 AAGLQKTIDRLQQTE------GSLSGR 654



 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 87/276 (31%), Gaps = 20/276 (7%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
              +    ++   +E         + + +        + +  DQ ++    +A+  RL+ 
Sbjct: 459 QQYAEKTREVKKMQERLEDLRRDSEMKEQNLHDKLEHVENDLDQTIQE--RKALATRLES 516

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLSKKPSLREAALLLTLIN 493
           L                   RH      S  L    +  K  + +     E    L L N
Sbjct: 517 LQGLQRDFQQRNDEKNLLQGRHDALTAESASLQADLAQAKALIEELEDKLEHEKTLALGN 576

Query: 494 HPAILQEQYQELADIRYDNNELQK-LWSF-------LFSDFVEQKYFLPEEIHQRLCERG 545
              +  +  +E+  +  +  +L+  +          + S   E++    +         G
Sbjct: 577 ARDVRNQYTEEIDRLNNEVEDLKAEIREKERLYDDDIESWETEKRNLETQRARAEEQAAG 636

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLSRQKEEIEKQIAQ 604
             + + +L +                  +R+  +     ++ +  LL+RQ  E+ + + Q
Sbjct: 637 LQKTIDRLQQTEGSLS-------GRESKLREAIRSEKERHESQEALLTRQINELNEDV-Q 688

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
              K   +  + L S+  E+ +   +  S    IEG
Sbjct: 689 TRRKALEDSRSELASVREELRLSQREQRSLTEKIEG 724


>gi|149722749|ref|XP_001503645.1| PREDICTED: filamin A interacting protein 1 [Equus caballus]
          Length = 1212

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 43/364 (11%), Positives = 107/364 (29%), Gaps = 22/364 (6%)

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           +   DV+ + +              +    ++L  L    +L  +             +L
Sbjct: 91  QAREDVIHMLKTEKTKPEVLEAHYGSAEPEKVLRVLHRDAILAQEKSIGEDVYEKPISEL 150

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRETENR 393
                        +L                   E    +    +    D     E E  
Sbjct: 151 DRLEEKQKETYRRMLEQLLL--AEKCHRRTVYELENEKHKHTDYMNKSDDFTSLLEQERE 208

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                 E+ +     K   N  +  KLR    +     L  + ++ +       +  K  
Sbjct: 209 RLKKLLEQEKAYQARKEKENAKRLNKLRDELVKLKSFALMLVDERQMHIEQLGLQSQKVQ 268

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQELADIRYD 511
              +  +   ++L   +    +  ++    EA        H A    QE  +  A +   
Sbjct: 269 DLTQKLREEEEKLKAVTSKSKEDRQRLLRLEADF-----EHKASRFSQEHEEMNAKLANQ 323

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
            +  ++L   L       +    EE ++ L +    E L++L  ++      +++  A +
Sbjct: 324 ESHNRQLRLKLVGLTQRIEEL--EETNKNLQKA--EEELQELREKIAKGECGNSSLMAEV 379

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            ++R+   +     +       Q  E+ K++ +         +  L   + ++  ++ ++
Sbjct: 380 ENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHH-----SRELKLEVEKLQKRMSEL 434

Query: 632 ESQE 635
           E  E
Sbjct: 435 EKLE 438


>gi|118092084|ref|XP_421320.2| PREDICTED: similar to DVL-binding protein DAPLE [Gallus gallus]
          Length = 2066

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 76/222 (34%), Gaps = 7/222 (3%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  +    +   D++++  ++         R  K+N +   +    + + +   V  + +
Sbjct: 650 EFEKKQLQKDF-DQVKEKVERVEEMEKELHRLEKENEQLTKKATAMKTVTKKVEVLQQEN 708

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
               +    L  +L       Q     L D+  DN +L +    L       ++   +  
Sbjct: 709 WDLEMENRKLRKSL----DTFQNVSIRLGDLERDNKQLDEENLELRKVVETMRFTSTKMA 764

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                 +      + L + V    + S  +E   +  +    +   L +     +++ +E
Sbjct: 765 QIEAENKDLEREKEDLRKNVEMLKVLSKKSERLELSYQSINSENQRLQQMLENSNKKIQE 824

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +EK++    ++   +     +  L     ++ ++E +   +E
Sbjct: 825 LEKEVQATESEN--QVLQRNLEELKISAKRLERLEKENKALE 864


>gi|73980497|ref|XP_866314.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 11 [Canis
           familiaris]
          Length = 1284

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 92/294 (31%), Gaps = 19/294 (6%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R        + + E +  +    +              A            +K  + +  
Sbjct: 317 RAESLQQEVEALKERVDELTTDLEILKAEIEEKGKGPGAAGGSDGAASSYQLKQLEEQNA 376

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             +    R++ L      EH    +  +K  +  +     +  +Q  L + + S    L+
Sbjct: 377 RLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAE-STIDELK 435

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           E              +E  + L D   +  E +++L   +       +     + + R  
Sbjct: 436 EQVDAAL------GAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENARET 489

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++  
Sbjct: 490 ELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQEAS 549

Query: 603 AQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
            +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 550 VERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 603



 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330


>gi|1296662|emb|CAA91196.1| plectin [Homo sapiens]
          Length = 4684

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 55/193 (28%), Gaps = 23/193 (11%)

Query: 457  RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
            R ++     + +      +  ++ +  E  L    +          +        + ELQ
Sbjct: 2295 RQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ-------LEETDHQKNLLDEELQ 2347

Query: 517  KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT--------- 567
            +L +       ++     E    R+      +L  +++ + R   L              
Sbjct: 2348 RLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEA 2407

Query: 568  ----EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
                +      R       A   R      L++Q+   EK + +     +        + 
Sbjct: 2408 EKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAE 2467

Query: 621  LHEVHIQIHQIES 633
            L +   ++ Q ++
Sbjct: 2468 LLQQQKELAQEQA 2480



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 70/215 (32%), Gaps = 9/215 (4%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL- 487
              RL+ L ++   +         +     ++    +        + K   + +L+E    
Sbjct: 1940 AARLRALAEEAKRQRQLAEEDAARQRAEAERVLAEKLAAIGEATRLKTEAEIALKEKEAE 1999

Query: 488  ---LLTLINHPAILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
               L  L    A  + + +E A     +    L +L     S+   QK  + + + QR  
Sbjct: 2000 NERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKASDSELERQKGLVEDTLRQR-- 2057

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
             R   E +  L      A    A  E  +  +R   +  L   ++  L + ++ ++  + 
Sbjct: 2058 -RQVEEEILALKASFEKAAAGKAELELELGRIRSNAEDTLRSKEQAELEAARQRQLAAEE 2116

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
             +   + E      L +       +   +E  E +
Sbjct: 2117 ERRRREAEERVQKSLAAEEEAARQRKAALEEVERL 2151



 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1815 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1874

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1875 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKAKAE 1912



 Score = 37.9 bits (86), Expect = 4.7,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 78/268 (29%), Gaps = 23/268 (8%)

Query: 392  NRSFNTPDERAELEIHLKNCINHIK------DQKLRYYYSQAIR-----DRLQQLFQKYI 440
                 + D         +     I+       Q +R    Q        +R  +  ++  
Sbjct: 1347 RYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALLEEIERHGEKVEECQ 1406

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                 Y    K               + S   K K+           +    ++  +   
Sbjct: 1407 RFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTHYSELTTL 1466

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              Q +   ++ +  L+++         +Q+    E + +          L +   Q +  
Sbjct: 1467 TSQYI---KFISETLRRMEEE-ERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQ 1522

Query: 561  GLWSATT--EANIVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEAEKT 614
                A    +    +V +  + A+   ++ R +  + +++    E +I     + EA + 
Sbjct: 1523 AEREAKELQQRIQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQAEAAER 1582

Query: 615  AILI--SILHEVHIQIHQIESQEAMIEG 640
            + L     +  V +Q+   E Q    EG
Sbjct: 1583 SRLRIEEEIRVVRLQLEATERQRGGAEG 1610


>gi|327280438|ref|XP_003224959.1| PREDICTED: tax1-binding protein 1 homolog [Anolis carolinensis]
          Length = 814

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 33/301 (10%), Positives = 87/301 (28%), Gaps = 47/301 (15%)

Query: 365 CYGKTAFEKLIVESLPLVDML--WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            Y K  F++L  +       +   K E +       +  +++    ++ +   +    + 
Sbjct: 195 NYEKEKFDQLEAQQKDNFKTVEALKTEKDGLKKKYDEATSKVLQLEEDIMTVTQKAIAKE 254

Query: 423 YYSQAIRDRLQ-QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + +D+L+  + +K   E        +K       K       + +     L     
Sbjct: 255 TELDSFKDKLKKVILEKEQLECQLKTEKDEKELYKIHLKNTEIENTKLASEVQTLKNLDG 314

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            +E            ++    +E+  ++    E + L                  + ++L
Sbjct: 315 NKE-----------NLISYYKEEIGRLQLCVAEKENLKRAFL--LTSSNKEEASMLKEQL 361

Query: 542 CERGFGELLKQLDRQVRDAGLWSATT------------EANIVDVRQGYQQALALYKR-- 587
            +        + +  +    L  A                    V++    AL+  K+  
Sbjct: 362 RKADDQIQASRQEALLMSKELSDAVNVRDKTMADLHSARLENEKVKKQLADALSELKKIT 421

Query: 588 ------------FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                        + L R+ E+++ ++        A+          ++  QIH++  Q 
Sbjct: 422 LVNNEQEISNAVEKELRREVEDLKLRLQMA-----ADHYKEKFKECQKLQKQIHKLIDQS 476

Query: 636 A 636
           A
Sbjct: 477 A 477


>gi|325117875|emb|CBZ53426.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 961

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 82/248 (33%), Gaps = 20/248 (8%)

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            ++     +++  L  +      + ++    +   E        +    H   +      
Sbjct: 648 EMRRLRKEVEEAHLDKHQLAHELEEMKAAAARERQEKEAALANVQDALVHMKARYDCLLE 707

Query: 467 MQSSLVKGKLSKKPSLREAALLL--TLI-------NHPAILQEQYQELADIRYDNNELQK 517
              +L   + S +  + +   +    L+        H   L+     LA+++ + N L+K
Sbjct: 708 EMQALRDSRDSAEEGVAQRVKVYEDLLLTRETQCNEHTKQLETAQHNLAELQAERNRLKK 767

Query: 518 LWSFLFSDFVEQKY-FLPEEIHQRLCERGFGELLKQLDRQV-RDAGLWSATTEANIVDVR 575
           +   +  D    +         Q+       +L  +L   V R        T    +  +
Sbjct: 768 VLESITKDLERSRASLDAASARQQAVTAEKQQLEARLADMVQRQQRQEQLNTREEQLKQQ 827

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQV---------TAKGEAEKTAILISILHEVHI 626
           +  ++     KR   +SRQ EE  K + Q           A    ++ A L + L E   
Sbjct: 828 ESLRRLQEAQKRADEVSRQLEETRKALQQEQQHRQFQQQRADSGHQQAAALQNKLAEQDA 887

Query: 627 QIHQIESQ 634
           Q+ +++++
Sbjct: 888 QLTRMKAE 895


>gi|307130847|ref|YP_003882863.1| putative bifunctional chromosome partitioning protein and
           nucleotide hydrolase [Dickeya dadantii 3937]
 gi|306528376|gb|ADM98306.1| predicted bifunctional chromosome partitioning protein and
           nucleotide hydrolase [Dickeya dadantii 3937]
          Length = 1478

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 85/301 (28%), Gaps = 24/301 (7%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D           +  + +   +       E  +      +E  E             D  
Sbjct: 329 DYQAASDHLNLVQTAMRQQEKIERYNADLEELSYRLEEQNEVVEEARDQLEESEARADAA 388

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +      ++ +L    Q    + +   +Y +        +   Q    +     +    
Sbjct: 389 EQE--VDELKSQLADYQQALDVQQTRAIQYNQAQQALERARSLCQVPELTPDNADEWLDS 446

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIH 538
              +E      L+          Q+L+     N++ ++ +  +        +    +   
Sbjct: 447 FQAKEQEATELLLM-------LEQKLSVADAANSQFEQAYQLVCRIAGAISRSEAWDVAR 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR---LLSRQK 595
             L +      L +  + +R              D  +  Q+ +    +      L   +
Sbjct: 500 DVLRDSSSQRYLAEQVQPLRMRLSELEQRRREQQDAERLLQEFVKRSGQDYQPEDLDDLQ 559

Query: 596 EEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIE--------SQEAMIEGFGKMS 645
           +E+E +I  ++ +     E    L   L ++  +I Q+         +QEA+    G+ S
Sbjct: 560 QELEARIEDLSVRVSEAGEHRLALRQELEQIQQRIAQLTARAPVWLAAQEAL-TQLGEQS 618

Query: 646 G 646
           G
Sbjct: 619 G 619



 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/275 (9%), Positives = 80/275 (29%), Gaps = 18/275 (6%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +        +L  +S    D+    +  +   N        +  ++     +++   R  
Sbjct: 306 QTRHVEMARELQEQSGAESDLETDYQAASDHLNLVQTAMRQQEKIERYNADLEELSYRLE 365

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               + +  +   ++         +   +          +  + Q+  ++   +++   R
Sbjct: 366 EQNEVVEEARDQLEESEARADAAEQEVDELKSQLADYQQALDVQQTRAIQYNQAQQALER 425

Query: 484 EAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
             +L       P +  +   E L   +    E  +L   L            +       
Sbjct: 426 ARSLCQV----PELTPDNADEWLDSFQAKEQEATELLLMLEQKLSVADAANSQFEQAY-- 479

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY--QQALALYKRFRLLSRQKEE--- 597
                +L+ ++   +  +  W    +       Q Y  +Q   L  R   L +++ E   
Sbjct: 480 -----QLVCRIAGAISRSEAWDVARDVLRDSSSQRYLAEQVQPLRMRLSELEQRRREQQD 534

Query: 598 IEKQIAQVTAKGEAEKTAILISIL-HEVHIQIHQI 631
            E+ + +   +   +     +  L  E+  +I  +
Sbjct: 535 AERLLQEFVKRSGQDYQPEDLDDLQQELEARIEDL 569


>gi|301761608|ref|XP_002916206.1| PREDICTED: liprin-beta-2-like [Ailuropoda melanoleuca]
          Length = 875

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 65/193 (33%), Gaps = 16/193 (8%)

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL---QEQYQELADIRY 510
           A    +  P   L     ++  L      +E A LL+ I  P      +   ++++ + +
Sbjct: 39  ASPASRTNPFPVLHLVEDLRLALEMLEQPQERAALLSQIPGPTAAYIKESLEEKISQVNH 98

Query: 511 DNNELQKLWSFLFSDFVEQKY---FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
                 + +    +     K         +  ++  +G     +++              
Sbjct: 99  QGAASNETYQERLARLEGDKESLILQVSVLTDQVEAQG-----EKIRDLELCLEGHQVKL 153

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-----AQVTAKGEAEKTAILISILH 622
            A    ++Q      +L  +   L  +  E++ ++      Q   + +  K   L+  L 
Sbjct: 154 NAAEEMLQQELLSRTSLETQKLDLMTEVSELKLKLVGMEKEQRDQEEKQRKAEELLQELR 213

Query: 623 EVHIQIHQIESQE 635
            + I++ ++E+++
Sbjct: 214 HLKIKVEELENEQ 226


>gi|297157293|gb|ADI07005.1| ATP/GTP-binding protein [Streptomyces bingchenggensis BCW-1]
          Length = 1286

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 43/120 (35%), Gaps = 6/120 (5%)

Query: 514 ELQKLWSFLFSD--FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
           ELQ L   L       +Q     E + + L  R   + + +++ + R   +  +      
Sbjct: 122 ELQNLRDQLADADRRRQQAEVRAEALTEALQAR--KQRIAEMEIEQRQLAVSMSVERDGR 179

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIH 629
                   +   L      L  +++ +++++A++  +    +   L +     E+  Q+ 
Sbjct: 180 DGRDGRGAEVELLRDERERLRGERDRLKEEVARLQDELHQARRQALEAERRCEELEHQLQ 239


>gi|254675259|ref|NP_958795.2| plectin isoform 1g [Mus musculus]
          Length = 4550

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1717 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1776

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1777 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1836

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1837 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1888

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1889 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1948

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1949 ELELGRIRSNAEDTMRSKEQAELEAARQR 1977



 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2250 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2309

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2310 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2369

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2370 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2429

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2430 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2484

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2485 QEQILQETQALQKSFLSEKDSLLQRERFIE 2514



 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2210 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2269

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2270 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2329

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2330 KAEAELLQQQKELAQEQA 2347



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1661 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1720

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1721 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1779



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1211 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1270

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1271 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1327

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1328 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1384

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1385 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1444

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1445 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1477


>gi|242005128|ref|XP_002423425.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212506494|gb|EEB10687.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 1014

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 72/196 (36%), Gaps = 32/196 (16%)

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD---------------- 511
           +S +   +  ++  LRE  + + L+N   + +++ Q+L + + D                
Sbjct: 648 KSDINNLEQQEEEVLREIKMEMALLNAEYLSEKEKQKLDEEKLDSLRDKQKQLDVEIDQC 707

Query: 512 -----------NNELQKLWSFL---FSDFVEQKYFLPEEIHQRLCERGFGELLKQLD-RQ 556
                      N  + +L   L        E+K F  +  +         +L + ++ + 
Sbjct: 708 KSRDTETQRNCNERIMELKKELSKMEEKLGEEKEFSEDYKNSVEKLEAERKLFEDIEFKH 767

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           + +   W AT +    DV +  ++      R   L  Q  ++EK   + +   E +K   
Sbjct: 768 LEEEANWLATKDELQRDVNEISKKIDERKMRLSELEDQIRDVEKLSQKESNSLELQKI-K 826

Query: 617 LISILHEVHIQIHQIE 632
           L   + E   ++ +++
Sbjct: 827 LQQKMEEARKKLKELD 842


>gi|212537423|ref|XP_002148867.1| structural maintenance of chromosome complex subunit SmcA
           [Penicillium marneffei ATCC 18224]
 gi|210068609|gb|EEA22700.1| structural maintenance of chromosome complex subunit SmcA
           [Penicillium marneffei ATCC 18224]
          Length = 1184

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 50/134 (37%), Gaps = 14/134 (10%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
             +++ + L       K    +   ++     + + L  + + +    +     +     
Sbjct: 385 AAKEIAARLDGHDETMKNLTRQIDSEKKEGSTYKQQLSTVQQSIN--RITRQMEDKPEEF 442

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQI 631
               Y + +      R L R+ ++IE +  ++    +A  E+       +++   ++  +
Sbjct: 443 DIDAYNEKI------RALQREIKDIENRAREIKEGRKAVFERLEEKKHRINDTENELRSL 496

Query: 632 ESQ----EAMIEGF 641
           +SQ    EAM++ F
Sbjct: 497 QSQSGQREAMLKKF 510


>gi|167904485|ref|ZP_02491690.1| putative GTP-binding protein [Burkholderia pseudomallei NCTC 13177]
          Length = 882

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            + +  +    G+   ++ LD +VR A       +  + D+++    A AL + +     
Sbjct: 635 ADLLEAKAASAGYASEIETLDAKVRAAR-----PDVLLQDIQRWRASAEALERAYDERRG 689

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           + E +E ++  + A+G  EK A +   + +   +I +++ 
Sbjct: 690 RIERLEAELQALGAQGIEEKRADVAREIEQTRRRIVEMQR 729


>gi|148697588|gb|EDL29535.1| plectin 1, isoform CRA_c [Mus musculus]
          Length = 4552

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1719 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1778

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1779 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1838

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1839 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1890

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1891 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1950

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1951 ELELGRIRSNAEDTMRSKEQAELEAARQR 1979



 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2252 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2311

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2312 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2371

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2372 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2431

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2432 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2486

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2487 QEQILQETQALQKSFLSEKDSLLQRERFIE 2516



 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2212 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2271

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2272 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2331

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2332 KAEAELLQQQKELAQEQA 2349



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1663 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1722

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1723 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1781



 Score = 37.6 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1213 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1272

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1273 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1329

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1330 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1386

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1387 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1446

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1447 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1479


>gi|148697586|gb|EDL29533.1| plectin 1, isoform CRA_a [Mus musculus]
          Length = 4572

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1739 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1798

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1799 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1858

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1859 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1910

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1911 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1970

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1971 ELELGRIRSNAEDTMRSKEQAELEAARQR 1999



 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2272 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2331

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2332 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2391

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2392 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2451

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2452 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2506

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2507 QEQILQETQALQKSFLSEKDSLLQRERFIE 2536



 Score = 40.6 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2232 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2291

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2292 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2351

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2352 KAEAELLQQQKELAQEQA 2369



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1683 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1742

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1743 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1801



 Score = 37.6 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1233 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1292

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1293 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1349

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1350 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1406

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1407 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1466

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1467 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1499


>gi|152984186|ref|YP_001349141.1| hypothetical protein PSPA7_3787 [Pseudomonas aeruginosa PA7]
 gi|150959344|gb|ABR81369.1| hypothetical protein PSPA7_3787 [Pseudomonas aeruginosa PA7]
          Length = 157

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEK 600
            +       ++  R  +     +AT      D  +   Q L    +  R L ++ EE  K
Sbjct: 37  SQAPAEGASERHVRISQAGRELAATRGVPPEDDDEDIPQELRPMVKMIRELKQKIEEKLK 96

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++ +     + +      + L  +  ++ Q+ S
Sbjct: 97  ELQEAMGSSDPDVKQ---NRLPALQKELQQLNS 126


>gi|325300501|ref|YP_004260418.1| DNA primase [Bacteroides salanitronis DSM 18170]
 gi|324320054|gb|ADY37945.1| DNA primase [Bacteroides salanitronis DSM 18170]
          Length = 306

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 15/78 (19%)

Query: 1  MNYPRDFIKDLLIHIPISNL---IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
          MN        L+  IPI +    IG Y      K  +    Y+A  P+ +++  SF  N 
Sbjct: 7  MNI------KLIRQIPIVDFLLAIGIY----PVKVTSCYAWYYA--PYREDEDLSFKVNK 54

Query: 58 SKGFYYCFSCHVKGDHLS 75
          ++  +Y F+    GD + 
Sbjct: 55 NRNIWYDFATAKSGDIID 72


>gi|322502339|emb|CBZ37423.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1228

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 79/234 (33%), Gaps = 13/234 (5%)

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
                HL+N ++ +K + +   +  A+ + L +  Q+   +H+    + +  +       
Sbjct: 489 QHRHAHLQNEVDRLKCELVAERHRSAMAEALFEDAQRKKEDHAAQLAHEQAISTSVAATL 548

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
              R   S+      +      E   L   ++H    +   Q+         E+++L   
Sbjct: 549 EPTRKSASASAATAAASAAHEEERQRLAEKLDHMQAERGVLQQ---------EVRQLTEA 599

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
                        E    +       + L  L+++       +   +A    + +   Q 
Sbjct: 600 ASQLQCTLDTRDHEYAVAQAEWTEAQKAL--LEKRSVFEAQVAKDRDAYQEKLHRLQTQL 657

Query: 582 LALYKRFRLLSRQKEEIE--KQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            A  KR + L   K+  E  +  A+  A    ++  ++ + L  +  Q+ ++E 
Sbjct: 658 EAEQKRGKALEADKQAAEHARTAAETQAASAEQRCGVMQAELAALQQQLKRLEE 711


>gi|307704937|ref|ZP_07641828.1| chromosome segregation protein SMC [Streptococcus mitis SK597]
 gi|307621551|gb|EFO00597.1| chromosome segregation protein SMC [Streptococcus mitis SK597]
          Length = 1179

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E  +E A +R +   L+ L   +       +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAEEEASLRSEEVALKTLQDQMARLTERLEGIKSQGEQARIQEQGLSLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  +  + +G  QA       R   ++  K+ +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEELDRLSEGDWQADKEKCQARLATIASDKQNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 833


>gi|312116063|ref|YP_004013659.1| hypothetical protein Rvan_3377 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311221192|gb|ADP72560.1| hypothetical protein Rvan_3377 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 855

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 30/268 (11%), Positives = 78/268 (29%), Gaps = 39/268 (14%)

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
           +      ++  ++ + ++  +          +  E  L+     +KD   R    + I+ 
Sbjct: 495 WRLKNEPTIADIEDVVEQLWDVAIRIEDGNLSAAERELRAAQERLKDALERGAPREEIQK 554

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            + +L Q   +      +   KNA        ++ +                     L  
Sbjct: 555 LMAELRQALNSYLQALRQQQNKNADRAAASPNAKTISPQD-----------------LAQ 597

Query: 491 LINHPAILQEQYQELADIRYDNNELQKL--WSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++       ++ + LA     +   Q L     +       +     +       +   E
Sbjct: 598 ML-------DKIENLAKSGSADAAAQMLNQLRDILESLQNAQGSGQSQEEDAESLQKLDE 650

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQG-------------YQQALALYKRFRLLSRQK 595
           +   L +Q +         +    +                  +Q  A  K    L R++
Sbjct: 651 MTDLLRKQQQLLDDTFREQQNQDENADDEKGAQPRQGQGQRGQKQGQASPKSSAELDRRQ 710

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHE 623
           E+++KQ+ ++ +   A+    +   L E
Sbjct: 711 EDLQKQLQELLSGMNADGKDPVQQKLRE 738


>gi|257080961|ref|ZP_05575322.1| predicted protein [Enterococcus faecalis E1Sol]
 gi|256988991|gb|EEU76293.1| predicted protein [Enterococcus faecalis E1Sol]
          Length = 624

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 53/179 (29%), Gaps = 19/179 (10%)

Query: 45  FHDEKTPSFHC-NDSK-GF--YYCFS-----CHVKGDHLSFLSALLGCSFIESVQRLAAI 95
           FH+E  PS       K G   Y CFS     C   G+ +S L   L  S IE V  L   
Sbjct: 261 FHEETEPSASVFYAEKYGIFLYKCFSESHPYC---GNIISLLERYLKISSIEVVNLL--- 314

Query: 96  AGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIE 155
               + +   K+    K+        +   +     L+    +   Y+   +      ++
Sbjct: 315 ----VEISSSKVTNTSKLGQSKFNAHKFKKELQSGELEENYPELYKYFSRYQVEIPIILD 370

Query: 156 MFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR 214
                   D    LR        +  K +         +   +     + ++  I   +
Sbjct: 371 FMYDYVYTDENGELRYLNYYSINNLAKQLAKATNKKKISIDRTRQILYHMIVTEIVKKK 429


>gi|254675251|ref|NP_958792.2| plectin isoform 1d [Mus musculus]
          Length = 4511

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1678 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1737

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1738 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1797

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1798 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1849

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1850 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1909

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1910 ELELGRIRSNAEDTMRSKEQAELEAARQR 1938



 Score = 40.6 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2211 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2270

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2271 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2330

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2331 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2390

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2391 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2445

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2446 QEQILQETQALQKSFLSEKDSLLQRERFIE 2475



 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2171 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2230

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2231 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2290

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2291 KAEAELLQQQKELAQEQA 2308



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1622 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1681

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1682 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1740



 Score = 37.2 bits (84), Expect = 8.0,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1172 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1231

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1232 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1288

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1289 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1345

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1346 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1405

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1406 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1438


>gi|254675195|ref|NP_035247.2| plectin isoform 1c [Mus musculus]
          Length = 4572

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1739 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1798

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1799 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1858

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1859 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1910

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1911 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1970

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1971 ELELGRIRSNAEDTMRSKEQAELEAARQR 1999



 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2272 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2331

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2332 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2391

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2392 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2451

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2452 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2506

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2507 QEQILQETQALQKSFLSEKDSLLQRERFIE 2536



 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2232 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2291

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2292 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2351

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2352 KAEAELLQQQKELAQEQA 2369



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1683 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1742

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1743 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1801



 Score = 37.6 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1233 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1292

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1293 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1349

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1350 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1406

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1407 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1466

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1467 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1499


>gi|254675119|ref|NP_001157021.1| plectin isoform 1b2alpha [Mus musculus]
          Length = 4548

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1715 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1774

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1775 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1834

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1835 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1886

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1887 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1946

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1947 ELELGRIRSNAEDTMRSKEQAELEAARQR 1975



 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2248 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2307

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2308 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2367

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2368 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2427

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2428 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2482

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2483 QEQILQETQALQKSFLSEKDSLLQRERFIE 2512



 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2208 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2267

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2268 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2327

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2328 KAEAELLQQQKELAQEQA 2345



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1659 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1718

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1719 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1777



 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1209 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1268

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1269 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1325

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1326 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1382

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1383 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1442

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1443 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1475


>gi|326672489|ref|XP_003199676.1| PREDICTED: coiled-coil domain-containing protein 57-like [Danio
           rerio]
          Length = 979

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 76/219 (34%), Gaps = 27/219 (12%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           +++Q   +  I +        +++ + R ++   +  +Q   +      +   RE     
Sbjct: 129 EKVQSKMESEIQKLREENESLRRDLQRRIRESDGELALQKQEMMADFDSEMRKREHE--- 185

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                      +  E+ ++       +KL S       +      E +     E  + + 
Sbjct: 186 --------FHLKLDEMNNLVLSCQLKEKLLSKELEVHAKAHSQATEALQA--SEELYQQA 235

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR--------LLSRQKEEIEKQ 601
            K++  +  D    +A  ++ I ++ +  +Q     K+ +         L R+  E +  
Sbjct: 236 QKEIQHRDWDLKNTTAMKDSRIKELEETLKQLENNCKKEQEAYDRKHAELERRTRESKDA 295

Query: 602 IAQVTAK------GEAEKTAILISILHEVHIQIHQIESQ 634
           + ++          E EK++ L + L  + +++ + E  
Sbjct: 296 LDRLREAHARDLQEEREKSSELQAQLDRMILELERREKT 334


>gi|148697587|gb|EDL29534.1| plectin 1, isoform CRA_b [Mus musculus]
          Length = 4584

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1751 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1810

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1811 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1870

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1871 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1922

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1923 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1982

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1983 ELELGRIRSNAEDTMRSKEQAELEAARQR 2011



 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2284 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2343

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2344 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2403

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2404 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2463

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2464 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2518

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2519 QEQILQETQALQKSFLSEKDSLLQRERFIE 2548



 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2244 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2303

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2304 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2363

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2364 KAEAELLQQQKELAQEQA 2381



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1695 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1754

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1755 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1813



 Score = 37.6 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1245 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1304

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1305 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1361

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1362 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1418

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1419 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1478

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1479 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1511


>gi|109075209|ref|XP_001110550.1| PREDICTED: centromere-associated protein E-like isoform 2 [Macaca
            mulatta]
          Length = 2665

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 71/214 (33%), Gaps = 16/214 (7%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
              I +  + L                   +    K       +      +L K+   +  
Sbjct: 1802 DKISNMQKDLENSNAKLQEKIQELKANEHQLFKLKKDVNETQKKVSEMEQLKKQIKDQSL 1861

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L      +  + Q+ ++ L +++    E   L         E      +++ + L E  
Sbjct: 1862 TLSKIETENLNLAQKLHENLEEMKSVMKERDNLRR-----VEETLKLERDQLMESLQETK 1916

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQ 604
              +L  ++ ++++ A + S   +  I  +R+   +         + L + K+E++K+I +
Sbjct: 1917 ARDL--EIQQELKTAHMLSKEHKETIDKLREKILEKTTQISNIQKDLDKSKDELQKKIQE 1974

Query: 605  VTA--------KGEAEKTAILISILHEVHIQIHQ 630
            +          K +   +   I+ + ++  Q   
Sbjct: 1975 LQKKELHLLRMKEDVNMSHKKINEMEQLKKQFEA 2008


>gi|108995980|ref|XP_001084851.1| PREDICTED: uncharacterized protein KIAA0562 [Macaca mulatta]
          Length = 925

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 34/132 (25%), Gaps = 5/132 (3%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
               + +         L   ++      P           +   L  L   +      + 
Sbjct: 153 DPADFSDESNTASREKLIDHYLGHNSEDPALEGTYTRRSDYISPLDDLAFDMYQDPEVAQ 212

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILISILH 622
                    R+  Q+    Y +   L +   +++K   ++ +   +           +  
Sbjct: 213 IIRKLDERKREAVQKERYDYAKK--LKQAIADLQKVGERLGRYEVEKRCAVEKEDYDLAK 270

Query: 623 EVHIQIHQIESQ 634
           E   Q+ Q  ++
Sbjct: 271 EKKQQMEQYRAE 282


>gi|41322916|ref|NP_958782.1| plectin isoform 1 [Homo sapiens]
 gi|209572726|sp|Q15149|PLEC_HUMAN RecName: Full=Plectin; Short=PCN; Short=PLTN; AltName:
            Full=Hemidesmosomal protein 1; Short=HD1; AltName:
            Full=Plectin-1
 gi|40849936|gb|AAR95680.1| plectin 6 [Homo sapiens]
          Length = 4684

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 55/193 (28%), Gaps = 23/193 (11%)

Query: 457  RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
            R ++     + +      +  ++ +  E  L    +          +        + ELQ
Sbjct: 2295 RQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ-------LEETDHQKNLLDEELQ 2347

Query: 517  KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT--------- 567
            +L +       ++     E    R+      +L  +++ + R   L              
Sbjct: 2348 RLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEA 2407

Query: 568  ----EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
                +      R       A   R      L++Q+   EK + +     +        + 
Sbjct: 2408 EKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAE 2467

Query: 621  LHEVHIQIHQIES 633
            L +   ++ Q ++
Sbjct: 2468 LLQQQKELAQEQA 2480



 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1815 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1874

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1875 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1912



 Score = 37.9 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 19/212 (8%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
               LQQ  Q+ +          ++  R   ++    R    + ++ K  +     E + L
Sbjct: 1527 AKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQA-EAAERSRL 1585

Query: 489  LTLINHPAILQEQYQELADIRY----DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                     ++    +L            ELQ L +       +++    E   +RL  +
Sbjct: 1586 RI----EEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEA--ERLRRQ 1639

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E  ++   +V  A    A  EA     R          +    L  Q EE E+++ Q
Sbjct: 1640 VQDESQRKRQAEVELASRVKAEAEAAREKQRA--------LQALEELRLQAEEAERRLRQ 1691

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +   +    L +       ++    +  A
Sbjct: 1692 AEVERARQVQVALETAQRSAEAELQSKRASFA 1723



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 78/268 (29%), Gaps = 23/268 (8%)

Query: 392  NRSFNTPDERAELEIHLKNCINHIK------DQKLRYYYSQAIR-----DRLQQLFQKYI 440
                 + D         +     I+       Q +R    Q        +R  +  ++  
Sbjct: 1347 RYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALLEEIERHGEKVEECQ 1406

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                 Y    K               + S   K K+           +    ++  +   
Sbjct: 1407 RFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTHYSELTTL 1466

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              Q +   ++ +  L+++         +Q+    E + +          L +   Q +  
Sbjct: 1467 TSQYI---KFISETLRRMEEE-ERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQ 1522

Query: 561  GLWSATT--EANIVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEAEKT 614
                A    +    +V +  + A+   ++ R +  + +++    E +I     + EA + 
Sbjct: 1523 AEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQAEAAER 1582

Query: 615  AILI--SILHEVHIQIHQIESQEAMIEG 640
            + L     +  V +Q+   E Q    EG
Sbjct: 1583 SRLRIEEEIRVVRLQLEATERQRGGAEG 1610


>gi|323139751|ref|ZP_08074788.1| Protein of unknown function DUF2130 [Methylocystis sp. ATCC 49242]
 gi|322394988|gb|EFX97552.1| Protein of unknown function DUF2130 [Methylocystis sp. ATCC 49242]
          Length = 567

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 74/217 (34%), Gaps = 6/217 (2%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            ++ +LQQL Q+  T  +      K        +         +             EAA
Sbjct: 143 DLKAQLQQLRQENETALATAKADAKAREAEILAQAQRAAEATVAEKLAASESARFESEAA 202

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR---LCE 543
           L   +           Q+   ++   +EL K      +   E        I Q    L E
Sbjct: 203 LQARIALAEETKLAAEQKGVALQLQLDELHKAKEAEVARVREDAAAEASRIRQEATELAE 262

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
               + +   ++ + +A   +A  E  +  + +  Q  LAL +R   L    E+ + +  
Sbjct: 263 ASIRQKISDNEKALAEAQAKTAEAETKLSQLSE--QHELALKERLDSLREVMEKAKDEAI 320

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            V      ++   L + ++E+   + + ++ E + EG
Sbjct: 321 NVEKARAFDENQKLSNKVNELQRALEK-KTNEELGEG 356


>gi|314939581|ref|ZP_07846808.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|314941206|ref|ZP_07848102.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|314948630|ref|ZP_07852005.1| conserved hypothetical protein [Enterococcus faecium TX0082]
 gi|314953346|ref|ZP_07856273.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|314993423|ref|ZP_07858788.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|314995772|ref|ZP_07860861.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|313590044|gb|EFR68889.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|313592088|gb|EFR70933.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|313594622|gb|EFR73467.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|313599930|gb|EFR78773.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|313641121|gb|EFS05701.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|313644961|gb|EFS09541.1| conserved hypothetical protein [Enterococcus faecium TX0082]
          Length = 539

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           ++++  ++     + ++  +L   L +   E    +  +  +R  +    ++L +L  + 
Sbjct: 54  IKKEADKVTASHKEKDQASQLIDKLENGEEEISEPVDPKERERQDQENLEKILDELATEA 113

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFR----------LLSRQKEEIEKQIAQVTA 607
                      A   D +    +      +                Q++ +E +I ++ A
Sbjct: 114 NKTSARLDEVNAQFADNKAARNEKQEALMQLNTKEELGELTEEELAQRQTLEAEIKELEA 173

Query: 608 KGEA--EKTAILISILHEVHI 626
            G+   E+   L + L ++  
Sbjct: 174 SGDTLLEEQLKLEAELKDIRK 194


>gi|308504173|ref|XP_003114270.1| CRE-MYO-3 protein [Caenorhabditis remanei]
 gi|308261655|gb|EFP05608.1| CRE-MYO-3 protein [Caenorhabditis remanei]
          Length = 1969

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 84/257 (32%), Gaps = 23/257 (8%)

Query: 391  ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
            E R+      +A LE  L +    ++D + R+      + + +Q                
Sbjct: 915  EERNEKLNQLKATLESKLTDISGQLEDMQERHEDLTRAKKKTEQELSDTKKHVQDLELSL 974

Query: 451  KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
            +K  + +  +  + R +Q  +     +     +E        +     ++  ++L     
Sbjct: 975  RKAEQEKQSRDHNIRSLQDEMANQDEAVAKLNKEKK------HQEESNRKLNEDLQSEED 1028

Query: 511  DNNELQKLWSFL------FSDFVEQKYFLPEEIHQ--RLCERGFGELLKQLDRQVRDAGL 562
              N L+K+ + L        + ++++     +I +  R  E       + +D   +    
Sbjct: 1029 KVNHLEKIRNKLEQQMDELEETIDREKRSRSDIEKSKRKVEGDLKVAQENIDEITKQKQD 1088

Query: 563  WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA---------QVTAKGEAEK 613
               T +    D+     +          L RQ +E++ +IA         + + +     
Sbjct: 1089 VENTLKRKEEDLHHASAKLAEEQALAAKLQRQIKELQARIAELEEELESERNSRQKSDRT 1148

Query: 614  TAILISILHEVHIQIHQ 630
               L   L E+  ++ Q
Sbjct: 1149 RNELQRELEEISERLEQ 1165



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 84/273 (30%), Gaps = 11/273 (4%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +        +    +   ++       E ++        E          + K  +L+  
Sbjct: 868  KIQKLEEAVQRGEIARSQLESQVADLVEEKNALFLSLETEKANLADAEERNEKLNQLKAT 927

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                + D   QL               K      D K   Q L  S     +  +     
Sbjct: 928  LESKLTDISGQLEDMQERHEDLTRAKKKTEQELSDTKKHVQDLELSLRKAEQEKQSRDHN 987

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
              +L   + N    + +  +E           +KL   L     E K    E+I  +L +
Sbjct: 988  IRSLQDEMANQDEAVAKLNKEKKHQE---ESNRKLNEDL--QSEEDKVNHLEKIRNKLEQ 1042

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   EL + +DR+ R       +      D++   +    + K+ + +    +  E+ + 
Sbjct: 1043 Q-MDELEETIDREKRSRSDIEKSKRKVEGDLKVAQENIDEITKQKQDVENTLKRKEEDLH 1101

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +AK   E+         ++  QI +++++ A
Sbjct: 1102 HASAKLAEEQALAA-----KLQRQIKELQARIA 1129



 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 93/305 (30%), Gaps = 15/305 (4%)

Query: 321  FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380
             + +    +   + ++L L       +     +   +D           A      +   
Sbjct: 956  TEQELSDTKKHVQDLELSLRKAEQEKQSRDHNIRSLQD--EMANQDEAVAKLNKEKKHQE 1013

Query: 381  LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
              +     + ++          ++   L+  ++ +++   R         R +   +K  
Sbjct: 1014 ESNRKLNEDLQSEEDKVN-HLEKIRNKLEQQMDELEETIDRE-------KRSRSDIEKSK 1065

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
             +  G  +  ++N     ++            +        L E   L   +     ++E
Sbjct: 1066 RKVEGDLKVAQENIDEITKQKQDVENTLKRKEEDLHHASAKLAEEQALAAKLQRQ--IKE 1123

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
                +A++  +    +            +     EEI +RL ++G     +    + R+A
Sbjct: 1124 LQARIAELEEELESERNSRQK-SDRTRNELQRELEEISERLEQQGGFSAAQIEANKKREA 1182

Query: 561  GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
             +     E    D         +L KR      +  E  + + ++ A+G+AE++  L   
Sbjct: 1183 EIAKLRREKE-EDALNHETAVSSLRKRQGDAVAELTEQLETLQKLKARGDAERS-KLQRD 1240

Query: 621  LHEVH 625
            L E  
Sbjct: 1241 LEEAQ 1245


>gi|291383809|ref|XP_002708418.1| PREDICTED: hypothetical protein [Oryctolagus cuniculus]
          Length = 1441

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 80/216 (37%), Gaps = 17/216 (7%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q +R+ L+ L +          R  +K    R++    ++  Q++L         
Sbjct: 677 QEASLQRLREELESLEKAERASLEQQSR--QKLELLREEMAALEKDEQAALRAETEEALR 734

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNN-ELQKLWSFLFSDFVE--QKYFLPEEI 537
            LRE            +  E+   LA +  ++  EL++  S L +   E         E 
Sbjct: 735 QLRER-----------LQGERKDALARLEQEHRTELEQQRSLLETKHQEVLSGLQKKIEE 783

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            Q+  E    E L + +++           E  +  + +  +Q +   +  R L R KEE
Sbjct: 784 AQQREEAELRESLGKAEQRAYQKLHQVLEYEQELSSLLREKRQEVE-REHERKLDRMKEE 842

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            ++ +A+   + E E+      +L  +  ++ ++  
Sbjct: 843 HQRAVAEAREQYEVEERKQRADLLAHLTGELERLRR 878



 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 73/217 (33%), Gaps = 21/217 (9%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           Q+   E  G G+   +    +    P+  +          +      EAAL        A
Sbjct: 530 QRSQAEELGPGQEEAEEPEEKVAVSPTPPVSPEVPSTEPAAPPQQPSEAALKAV---EEA 586

Query: 497 ILQEQY-QELADIRYDNNELQKLWSFL----FSDFVEQKYFLPEEIHQRLCER------- 544
           + QE    +   +  +  ++Q+L   L      + V+QK      + ++L +        
Sbjct: 587 VAQELEQDQRRLLELEREKMQQLREKLWQEEEEEVVQQKVKSLSSLQEQLQKATEEEEAR 646

Query: 545 ---GFGELLKQLDRQVRDAGLWSATTEANIVDV-RQGYQQALALYKRFR--LLSRQKEEI 598
                 + L +L  Q+R +            +   Q  ++ L   ++     L +Q  + 
Sbjct: 647 MREEESQRLSRLRAQLRSSTEADEDQIRATQEASLQRLREELESLEKAERASLEQQSRQK 706

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            + + +  A  E ++ A L +   E   Q+ +    E
Sbjct: 707 LELLREEMAALEKDEQAALRAETEEALRQLRERLQGE 743



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 39/322 (12%), Positives = 101/322 (31%), Gaps = 57/322 (17%)

Query: 357  EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            +D  + +R   + A  +L             R  +        +R+ LE   +  ++ ++
Sbjct: 719  KDEQAALRAETEEALRQLRERLQGERKDALARLEQEHRTELEQQRSLLETKHQEVLSGLQ 778

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
                          ++++  Q+   E        ++ A  +  +        SSL++ K 
Sbjct: 779  -------------KKIEEAQQREEAELRESLGKAEQRAYQKLHQVLEYEQELSSLLREKR 825

Query: 477  SKKPSLREAALLLTLINHPAILQEQYQELADIR-------YDN-----NELQKLWSFLFS 524
             +     E  L      H   + E  ++              +       L++       
Sbjct: 826  QEVEREHERKLDRMKEEHQRAVAEAREQYEVEERKQRADLLAHLTGELERLRRAHERELE 885

Query: 525  DFVEQKYFLPEEI--HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
               +++    E++   QR  ER   +L  +L+ + +D     A  +      R+  QQ L
Sbjct: 886  STRQEQDKQREDLWRRQREQERKLQDLEVELEIRTKDVKAKLAQLDVQEKTARKEKQQLL 945

Query: 583  ALYKRF----------------------------RLLSRQKEEIEKQIAQVTAKGE--AE 612
             + ++                             R L R  +E++ +   + ++ +    
Sbjct: 946  DVQRQVALEREEATATHRHLEEAKKEHAQLMESSRQLRRVLDELQARKLDLESQLDQLQA 1005

Query: 613  KTAILISILHEVHIQIHQIESQ 634
            ++  L   +  +  ++ + +S 
Sbjct: 1006 QSQRLQRHVSSLEAEVQRKQST 1027


>gi|261208660|ref|ZP_05923097.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289566081|ref|ZP_06446517.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|260077162|gb|EEW64882.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289162103|gb|EFD09967.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
          Length = 522

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           ++++  ++     + ++  +L   L +   E    +  +  +R  +    ++L +L  + 
Sbjct: 37  IKKEADKVTASHKEKDQASQLIDKLENGEEEISEPVDPKERERQDQENLEKILDELATEA 96

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFR----------LLSRQKEEIEKQIAQVTA 607
                      A   D +    +      +                Q++ +E +I ++ A
Sbjct: 97  NKTSARLDEVNAQFADNKAARNEKQEALMQLNTKEELGELTEEELAQRQTLEAEIKELEA 156

Query: 608 KGEA--EKTAILISILHEVHI 626
            G+   E+   L + L ++  
Sbjct: 157 SGDTLLEEQLKLEAELKDIRK 177


>gi|288930882|ref|YP_003434942.1| hypothetical protein Ferp_0493 [Ferroglobus placidus DSM 10642]
 gi|288893130|gb|ADC64667.1| hypothetical protein Ferp_0493 [Ferroglobus placidus DSM 10642]
          Length = 453

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/146 (8%), Positives = 49/146 (33%), Gaps = 15/146 (10%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQ 556
           ++                +    +     + +    E   + L        + +++++ +
Sbjct: 137 EKWENAKERFEKAREWFNETRKKVEEARKQAREKRFEAWKKHLTAWVEVAKKWVERVELR 196

Query: 557 VRDAGLWSATTEA-------------NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +++  L + + E              +I       Q    L ++ R +    +E+ +++ 
Sbjct: 197 IQNLKLNNESKERLMSKLQEVKDSLNSIESEINASQNYTELREKAREIRELWKELRQEMR 256

Query: 604 QVTAKGEAEKTAILISILHEVHIQIH 629
           Q   +   +K + ++  L +V  ++ 
Sbjct: 257 QAVQEYAIDKYSEILERLKQVRDRLQ 282


>gi|256418964|ref|NP_958788.2| plectin isoform 1e [Mus musculus]
          Length = 4521

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1688 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1747

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1748 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1807

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1808 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1859

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1860 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1919

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1920 ELELGRIRSNAEDTMRSKEQAELEAARQR 1948



 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2221 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2280

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2281 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2340

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2341 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2400

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2401 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2455

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2456 QEQILQETQALQKSFLSEKDSLLQRERFIE 2485



 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2181 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2240

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2241 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2300

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2301 KAEAELLQQQKELAQEQA 2318



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1632 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1691

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1692 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1750



 Score = 37.6 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1182 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1241

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1242 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1298

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1299 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1355

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1356 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1415

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1416 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1448


>gi|254675201|ref|NP_958787.2| plectin isoform 1f [Mus musculus]
          Length = 4534

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1701 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1760

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1761 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1820

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1821 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1872

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1873 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1932

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1933 ELELGRIRSNAEDTMRSKEQAELEAARQR 1961



 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2234 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2293

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2294 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2353

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2354 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2413

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2414 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2468

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2469 QEQILQETQALQKSFLSEKDSLLQRERFIE 2498



 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2194 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2253

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2254 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2313

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2314 KAEAELLQQQKELAQEQA 2331



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1645 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1704

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1705 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1763



 Score = 37.2 bits (84), Expect = 7.9,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1195 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1254

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1255 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1311

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1312 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1368

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1369 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1428

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1429 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1461


>gi|242088633|ref|XP_002440149.1| hypothetical protein SORBIDRAFT_09g026850 [Sorghum bicolor]
 gi|241945434|gb|EES18579.1| hypothetical protein SORBIDRAFT_09g026850 [Sorghum bicolor]
          Length = 1399

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 88/266 (33%), Gaps = 17/266 (6%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
                   + +      + A      +  +  +K         +  +++L++  ++  + 
Sbjct: 74  HRDHLNYLKMKRSVLIYQCAWRRRIARGELRKLKMAARDTETLKVEKEKLEEHVEELTSR 133

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
             G  +  + +      +  S+       ++ ++ +   ++E  L    I     L ++ 
Sbjct: 134 L-GLEKNLRIDLEKNKAREISKLQAALREMEQRVEEAIEMQERELAKKAIE--EALAQER 190

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
           +++  +    NE+  L   L  +  E        I  R       + +   D  +     
Sbjct: 191 EKITVL---TNEVDGLKVLLLREREENSATKSALIVTREENDVLNKKIVVADANMEQLRD 247

Query: 563 WSATTEANIVDVRQGY----QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
                E N+ ++        +Q   + +      ++ EE+ +QIA     G++ +    +
Sbjct: 248 TVKRFEKNVTELESSLMKEKEQNTTIGRELNEAHQRVEELLRQIANAN--GKSTELQTAV 305

Query: 619 SILHE--VHIQ---IHQIESQEAMIE 639
             L E  +  +   + + +  EA  +
Sbjct: 306 QRLQESLIEGEATLLAERKESEATKK 331


>gi|194217692|ref|XP_001504905.2| PREDICTED: myosin, heavy chain 3, skeletal muscle, embryonic [Equus
            caballus]
          Length = 1940

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 84/255 (32%), Gaps = 13/255 (5%)

Query: 389  ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
            E + +     +E  +L+ + +  +  ++        S+    R+++  +  + E      
Sbjct: 1572 EIDRKMVEKDEEIEQLKRNYQRTVETMQSALDAEVRSRNEAIRIKKKMEGDLNEIEIQLS 1631

Query: 449  YWKKNARHRDQKGPSQRLMQSSLV---KGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
            +  + A    +   S +             L  +  L+E   L  +     +LQ + +EL
Sbjct: 1632 HANRQAAETLKHLRSVQGQLKDTQLHLDDALRGQEDLKEQ--LAIVERRANLLQAEVEEL 1689

Query: 506  ADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFG----ELLKQLDRQVRDA 560
                      +KL    L       +    +       ++       +L  +++   RDA
Sbjct: 1690 RASLEQTERARKLAEQELLDSNERVQLLHTQNTSLIHTKKKLETDVTQLQSEVEDASRDA 1749

Query: 561  GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL--- 617
                   +  I D     ++          L R K+ +E+ +  +  + +  +   L   
Sbjct: 1750 RNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQQRLDEAEQLALKGG 1809

Query: 618  ISILHEVHIQIHQIE 632
               + ++  +I ++E
Sbjct: 1810 KKQIQKLETRIRELE 1824


>gi|189191540|ref|XP_001932109.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187973715|gb|EDU41214.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 648

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 38/115 (33%), Gaps = 12/115 (10%)

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
              P +            LL++L  +++ A   +   +  +  +      AL    +   
Sbjct: 80  NASPADAVDEDAREEQSALLQELKERLQKAEAAAEERQKQVEVLNARLDDALTEQAKLEE 139

Query: 591 LSR-----------QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +            +K+E+ +Q  ++    EAE+    +    E+  +   ++  
Sbjct: 140 RAHEEEEKVEALENEKKELTRQHRELEGIYEAERAQA-MKEKEEIQSREEDMQGT 193


>gi|159475333|ref|XP_001695773.1| hypothetical protein CHLREDRAFT_174403 [Chlamydomonas reinhardtii]
 gi|158275333|gb|EDP01110.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 4097

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/112 (8%), Positives = 34/112 (30%), Gaps = 5/112 (4%)

Query: 525  DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                        +  +L  +       +L      A       E+++ +++     +  L
Sbjct: 2143 AAASGLSLEVARLSAQLVAQTHEMF--RLQESELRAKQAHERRESDLQELQAQVAASELL 2200

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              + R    +       + +  ++   +   +L+  L E+  ++    +  A
Sbjct: 2201 LSQVRA---ESSAALLALREQLSEAHEQDRELLMRELRELQARLVATHNLAA 2249


>gi|507018|emb|CAA51682.1| immunoglobulin-Fc-binding protein [Streptococcus pyogenes]
          Length = 425

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 81/287 (28%), Gaps = 17/287 (5%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              +  +      K   +++  V   +              R      L   +  +  + 
Sbjct: 41  AETVGRFSDEQVRKAREKAIEDVFDGYTGARSVYQSGNLPNRLTPTK-LSKLMQQMYKET 99

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           L+    + +    + L      +      Y K+  + +       +    +L        
Sbjct: 100 LQK--KEELDTLSKALTHTIEKKIESENAYKKELGQLKAAAEAEAQKALDALNNKNKQIS 157

Query: 480 PSLREAALLLTLIN-HPAILQEQYQELADIRYDNNELQKLWSFL------FSDFVEQKYF 532
               E A L   I  +   +Q   +E+A       EL    S L           +Q   
Sbjct: 158 DLTTENAQLKEAIEGYVQTIQNASREIAA---KQQELAAAKSQLEAKNAEIEALKQQDAS 214

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             EE+  +L       L   L    R+     A  +    +  +   Q   L        
Sbjct: 215 KTEEL-AKLQSEA-ATLENLLGSAKRELTELQAKLDTATAEKAKLESQVTTLENLLGSAK 272

Query: 593 RQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAM 637
           R+  +++ ++    A+ E    + A L   L     ++  ++++ A 
Sbjct: 273 RELTDLQAKLDAANAEKEKLQSQAAALEKQLEATKKELADLQAKLAA 319


>gi|55377296|ref|YP_135146.1| MCP domain-containing signal transducer [Haloarcula marismortui
           ATCC 43049]
 gi|55230021|gb|AAV45440.1| MCP domain signal transducer [Haloarcula marismortui ATCC 43049]
          Length = 438

 Score = 41.0 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 94/336 (27%), Gaps = 27/336 (8%)

Query: 318 VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED---PDSFIRCYGKTAFEKL 374
           V+  DGD      A + I  +      G     V  + G+D       IR       ++ 
Sbjct: 39  VVDADGDITHWNQAVENILGLPASEAVGMNAYDVFGTEGQDETLAQEVIRTGEPVREDEF 98

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
                P   M   R           +           +    D   +    Q+++ ++  
Sbjct: 99  RSAERPDGTMAHARAVAIPLMGPGGDAIGAL----ELLIDFSDIVEQREALQSLQSQMAT 154

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
             +  + E         + +    Q    Q      +         ++ E        + 
Sbjct: 155 DVESAVGEIGDSAAAVTEQSDDIKQMAGEQSENLDEVQSEVSGFSATVEE-----IASSA 209

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCE-RGFGELLK 551
             +  +  +            ++    +       +       E+   + E   F E++ 
Sbjct: 210 EEVSSQSGEARELAEESVETAEETIERVEDATESAEQVASDSTELRGHIEEIDEFVEVIN 269

Query: 552 QLDRQVRDAGLWSATTEA---NIVDVRQGYQQALALY-----KRFRLLSRQKEEIEKQIA 603
            +  Q     L +    A   +  D        +        +    + R   E+ +++A
Sbjct: 270 DIADQTNMLALNANIEAARSNSDSDGFAVVADEIKELADESKQHADEVERIVGEV-REMA 328

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             TA+   E T  +   L ++      +++Q+A+++
Sbjct: 329 DSTAENVEETTDAIQQALTDIET---VLDNQQAIVD 361


>gi|323127137|gb|ADX24434.1| hypothetical protein SDE12394_04690 [Streptococcus dysgalactiae
          subsp. equisimilis ATCC 12394]
          Length = 358

 Score = 41.0 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 36 KGDYWACC------PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESV 89
             +          P HD    SF        +  FS  ++GD + F+  + G SF +++
Sbjct: 20 GYSFRCLSGQIYEHPDHD----SFRIFADTNTFKWFSRDIQGDVIDFVQLVAGVSFKKAL 75

Query: 90 QRL 92
            L
Sbjct: 76 SYL 78


>gi|304404217|ref|ZP_07385879.1| chromosome segregation protein SMC [Paenibacillus curdlanolyticus
           YK9]
 gi|304347195|gb|EFM13027.1| chromosome segregation protein SMC [Paenibacillus curdlanolyticus
           YK9]
          Length = 1196

 Score = 41.0 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +   +   G       L ++           E    +++Q  QQ   L  +   L +++ 
Sbjct: 654 LEGDIVNAGGSMTGGSLQKKGASLLGRQRQIEQMDEEIKQSEQQVEKLRLQLSDLRKEQS 713

Query: 597 EIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQ 634
              + I ++ A+GE  +     L S L ++  Q+ Q++ Q
Sbjct: 714 IRGQDIEELRAQGERYRIEEQHLKSELQQIDKQLAQLQEQ 753


>gi|299132450|ref|ZP_07025645.1| SMC domain-containing protein [Afipia sp. 1NLS2]
 gi|298592587|gb|EFI52787.1| SMC domain-containing protein [Afipia sp. 1NLS2]
          Length = 876

 Score = 41.0 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
              V + +   +E+ Q L        +     +   A L +A  E   +++++      A
Sbjct: 620 ELTVARSHTTDDELQQYLSAAEAALNIANEGHREAKATLEAAEPEVAALELQRAENAERA 679

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI--HQIESQEAMI 638
           +      L+R+K ++E ++  +   G  E+ A +     E   ++    IE+  A++
Sbjct: 680 IATDIETLTREKRDLEVELKTLGRDGIGEQLAEVEGQGLEAKKRLASRHIEAAAALL 736


>gi|257884051|ref|ZP_05663704.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257819889|gb|EEV47037.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
          Length = 522

 Score = 41.0 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           ++++  ++     + ++  +L   L +   E    +  +  +R  +    ++L +L  + 
Sbjct: 37  IKKEADKVTASHKEKDQASQLIDKLENGEEEISEPVDPKERERQDQENLEKILDELATEA 96

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFR----------LLSRQKEEIEKQIAQVTA 607
                      A   D +    +      +                Q++ +E +I ++ A
Sbjct: 97  NKTSARLDEVNAQFADNKAARNEKQEALMQLNTKEELGELTEEELAQRQTLEAEIKELEA 156

Query: 608 KGEA--EKTAILISILHEVHI 626
            G+   E+   L + L ++  
Sbjct: 157 SGDTLLEEQLKLEAELKDIRK 177


>gi|256000745|ref|NP_001157675.1| plectin isoform 1hij [Mus musculus]
 gi|256000747|ref|NP_958789.3| plectin isoform 1hij [Mus musculus]
 gi|256355107|ref|NP_958794.2| plectin isoform 1hij [Mus musculus]
 gi|256367522|ref|NP_958790.2| plectin isoform 1hij [Mus musculus]
          Length = 4386

 Score = 41.0 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 9/269 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               IR   +T   +   + L       + E    +    +  AEL          +  + 
Sbjct: 1553 QELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKA 1612

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 S++  ++ +Q  +              +     ++    ++L +    + +   +
Sbjct: 1613 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1672

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              L E   L  +     +  E    L +   +N  L++L         E       E   
Sbjct: 1673 RVLTEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAE------DEAFQRRRLEEQA 1724

Query: 540  RLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             L +    E L QL +    +        E  +   RQ  ++ +AL   F   +  K E+
Sbjct: 1725 ALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAEL 1784

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E ++ ++ +  E    +   + L     +
Sbjct: 1785 ELELGRIRSNAEDTMRSKEQAELEAARQR 1813



 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 20/270 (7%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              + E         D            +  + ++  R   +     RL+QL ++ + +  
Sbjct: 2086 RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR 2145

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----EAALLLTLINHPAILQ 499
                   K      Q+    +     L + K   +   R     +  +   L+      Q
Sbjct: 2146 ALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQ 2205

Query: 500  EQYQELADIRYD-NNELQKLWSFLFSDFVEQK--YFLPEEIHQRLCERGFGELLKQLDRQ 556
               +     + + + E ++L   +      Q       +   ++  E G      +L  Q
Sbjct: 2206 RTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQ 2265

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-- 614
             +   + +   +    D       A  L +    L R+KE+++++   +  K E  +T  
Sbjct: 2266 EKVTLVQTLEIQRQQSD-----HDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQ 2320

Query: 615  -AILISILHEVHI----QIHQIESQEAMIE 639
               ++     +      +   +  +E  IE
Sbjct: 2321 QEQILQETQALQKSFLSEKDSLLQRERFIE 2350



 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT---- 567
            + ELQ+L + +     ++     E    R+     G+L  +++ + R   L         
Sbjct: 2046 DEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRF 2105

Query: 568  -EANIVDVRQGYQQALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             E     ++Q  ++A  L                 L++Q+   EK + +     +     
Sbjct: 2106 LEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRL 2165

Query: 616  ILISILHEVHIQIHQIES 633
               + L +   ++ Q ++
Sbjct: 2166 KAEAELLQQQKELAQEQA 2183



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
             +    +K     E   R   +   + ++Q +   ++        E          Q+ +
Sbjct: 1497 LAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELI 1556

Query: 583  ALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             L        +Q++ +E+++A++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1557 RLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAE 1615



 Score = 37.6 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 22/273 (8%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ--KYIT 441
               +   E+    +   +       +     I + +      +  +  L+++ +  + + 
Sbjct: 1047 RQLRYYRESADPLSAWLQDAKRRQEQIQAVPIANCQAAREQLRQEKALLEEIERHGEKVE 1106

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E   + + +    +  + +  + +     +       K      +++     +  +    
Sbjct: 1107 ECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRY 1163

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             +        +  ++ +   L     E++    +   +R         L++  +      
Sbjct: 1164 SEL---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHA 1220

Query: 562  LWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619
               A  E    ++++  Q+ +A  +       +QK  I++++  +    EAE  A     
Sbjct: 1221 QAKAQAELEAQELQRRMQEEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQV 1280

Query: 620  ------------ILHEVHIQIHQIESQEAMIEG 640
                         +  V +Q+   E Q    EG
Sbjct: 1281 EAAERSRMRIEEEIRVVRLQLETTERQRGGAEG 1313


>gi|239826273|ref|YP_002948897.1| ATP-dependent chaperone ClpB [Geobacillus sp. WCH70]
 gi|239806566|gb|ACS23631.1| ATP-dependent chaperone ClpB [Geobacillus sp. WCH70]
          Length = 864

 Score = 41.0 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 22/205 (10%), Positives = 73/205 (35%), Gaps = 11/205 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI +     R +++          +  +++    + ++     + + AL+       
Sbjct: 320 YRQYIEKDPALERRFQQVLVEEPSVEDTISILRGLKERFEVHHGVKIHDRALVAAATLAD 379

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF--------G 547
             + +++     I   +     + + + S   E    +   +   + E            
Sbjct: 380 RYISDRFLPDKAIDLVDEACATIRTEMDSMPSELDEVMRRVMQLEIEEAALRKETDEASK 439

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ--IAQV 605
           E  + L +++ D    + + +A     ++  Q+   + +      R+ EE E +  + + 
Sbjct: 440 ERFEALTKELSDLREKANSMKAQWQQEKEAIQRVRDVREALEKAKRELEEAENEYDLNKA 499

Query: 606 TAKGEAEKTAILISILHEVHIQIHQ 630
            A+    +   L   L ++  Q+++
Sbjct: 500 -AELRHGRIPQLEKQLKQLEQQMNE 523


>gi|123409011|ref|XP_001303312.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121884681|gb|EAX90382.1| hypothetical protein TVAG_389360 [Trichomonas vaginalis G3]
          Length = 752

 Score = 41.0 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 88/273 (32%), Gaps = 25/273 (9%)

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
            ++ E++ R       + E+           ++Q     Y   I++   +      T   
Sbjct: 47  QFQIESQKREIEFLKNQIEILQENSQSNLVFQEQNNVEEYLIQIQNLSSENQGLVNTIEK 106

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
               Y         +K   +  + ++  +     +    E  LL   +  P I +   Q+
Sbjct: 107 NNAEYENNIKNLTFEKQKLEEELSNTKNEFTSHIQTLESENMLLQEQLKKPQIQESNVQD 166

Query: 505 LADIRYDNNELQK----LWSFLFSDFVEQKYFLPEEIHQRLCERGFG------------- 547
           +++   + ++L++    L S +     EQK    E    ++    F              
Sbjct: 167 ISNYVREISQLKQKNANLASTIEKITDEQKILKDENSKLQIQINQFRKESDRATELTHHN 226

Query: 548 --------ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                    L++Q+++  +D  L             +   Q   L  +   L  + + ++
Sbjct: 227 GDLITENSRLIQQINQLKKDFDLLQVEKSNQSAKSVEYEIQIANLQSQILNLQNKLDSLK 286

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +  +  ++ + E     +    ++  QI +++
Sbjct: 287 SEEGRKLSQDQIELYEQTLKQNEDLKQQIDELQ 319


>gi|157126267|ref|XP_001654566.1| hypothetical protein AaeL_AAEL002070 [Aedes aegypti]
 gi|108882538|gb|EAT46763.1| conserved hypothetical protein [Aedes aegypti]
          Length = 1837

 Score = 41.0 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 71/203 (34%), Gaps = 10/203 (4%)

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL--SKKPSLREAAL-LLTLINHP 495
                    +      R      P++RL     ++     S +    E  L L       
Sbjct: 680 LRHPIKSSAKGIFNTGRKLSPSPPNRRLTPEGPMEKDEGISDEDDPAELRLQLELNEQET 739

Query: 496 AILQEQYQELADIRYDNNEL-QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
           A+L+ + +EL      + E  ++L   L S   E                G  + L +  
Sbjct: 740 AVLRRKMEELEIENKRSREHVKELQESLISKTKEMDKQNKLPSLLGSKSSGTKDPLDEKK 799

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE----EIEKQIAQVTAKGE 610
            +V +  +     +  I   R+  ++A  L ++ + L ++ E    EI+ Q+ Q  +K  
Sbjct: 800 IKVMEEQINELRMKL-IEKDREVEREANVLRQKTQTLEQENEKYTAEIK-QLQQTKSKTG 857

Query: 611 AEKTAILISILHEVHIQIHQIES 633
             +T  L + + E+  +   +E 
Sbjct: 858 DAETKKLNNTIQELQKEKSDLEG 880


>gi|3510693|gb|AAC33564.1| huntingtin interacting protein 1 [Homo sapiens]
          Length = 995

 Score = 41.0 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 19/214 (8%), Positives = 74/214 (34%), Gaps = 3/214 (1%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             ++   +F    +             +        +   + S +K +L    +  +  +
Sbjct: 301 FDNKFDDIFGSSFSSDPFNFNSQNGVNKDEKDHLIERLYREISGLKAQLENMKTESQRVV 360

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-HQRLCERGF 546
           L    +   +  +  ++    +   ++ + L + L     +++     +     +  +  
Sbjct: 361 LQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQ 420

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
               +    + + + L     +    +     +Q     +    L R+K+E+E  + +++
Sbjct: 421 ANEQRYSKLKEKYSELVQNHADLLRKNAEVT-KQVSMARQAQVDLEREKKELEDSLERIS 479

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +G+  KT   + +L  +  ++   + +  +++G
Sbjct: 480 DQGQR-KTQEQLEVLESLKQELATSQRELQVLQG 512


>gi|61657939|ref|NP_001013415.1| myosin heavy chain, skeletal muscle, adult [Gallus gallus]
 gi|1842051|gb|AAB47555.1| myosin heavy chain [Gallus gallus]
          Length = 1939

 Score = 41.0 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 84/277 (30%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  +L   +    +       +      ELE   K     ++D +      
Sbjct: 1351 EEEQEAKGELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1410

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1411 NAKCASLEKTKQRLQNEVEDLMVDVERSNAACAALDKKQKNFDKILAEWKQKYEETQTEL 1470

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+  + L     E         
Sbjct: 1471 EASQKESRSLSTELFKMKNAYEESLDHLETLKRENKNLQQEIADLTEQIAEGGK------ 1524

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +A++ +     +       R   L  +  +
Sbjct: 1525 -----------AVHELEKVKKHVEQEKSELQASLEEAEASLEHEEGKILR---LQLELNQ 1570

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            I+ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1571 IKSEIDRKIAEKDEEIDQLKRNHLRIVESMQSTLDAE 1607


>gi|69249260|ref|ZP_00604921.1| conserved hypothetical protein [Enterococcus faecium DO]
 gi|257879893|ref|ZP_05659546.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257890409|ref|ZP_05670062.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257893016|ref|ZP_05672669.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260559597|ref|ZP_05831777.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|293560389|ref|ZP_06676882.1| conserved hypothetical protein [Enterococcus faecium E1162]
 gi|293568691|ref|ZP_06680006.1| conserved hypothetical protein [Enterococcus faecium E1071]
 gi|294617846|ref|ZP_06697456.1| conserved hypothetical protein [Enterococcus faecium E1679]
 gi|68194230|gb|EAN08754.1| conserved hypothetical protein [Enterococcus faecium DO]
 gi|257814121|gb|EEV42879.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257826769|gb|EEV53395.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257829395|gb|EEV56002.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260074265|gb|EEW62587.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|291588651|gb|EFF20484.1| conserved hypothetical protein [Enterococcus faecium E1071]
 gi|291595864|gb|EFF27147.1| conserved hypothetical protein [Enterococcus faecium E1679]
 gi|291605677|gb|EFF35118.1| conserved hypothetical protein [Enterococcus faecium E1162]
          Length = 522

 Score = 41.0 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           ++++  ++     + ++  +L   L +   E    +  +  +R  +    ++L +L  + 
Sbjct: 37  IKKEADKVTASHKEKDQASQLIDKLENGEEEISEPVDPKERERQDQENLEKILDELATEA 96

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFR----------LLSRQKEEIEKQIAQVTA 607
                      A   D +    +      +                Q++ +E +I ++ A
Sbjct: 97  NKTSARLDEVNAQFADNKAARNEKQEALMQLNTKEELGELTEEELAQRQTLEAEIKELEA 156

Query: 608 KGEA--EKTAILISILHEVHI 626
            G+   E+   L + L ++  
Sbjct: 157 SGDTLLEEQLKLEAELKDIRK 177


>gi|297271934|ref|XP_001114005.2| PREDICTED: myosin-3-like isoform 2 [Macaca mulatta]
          Length = 1945

 Score = 41.0 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 84/265 (31%), Gaps = 17/265 (6%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +    +D     + E       + +  +E         ++ +       + +   L ++ 
Sbjct: 1573 QVKSEIDRKIAEKDEEIEQLKRNYQRTVETMQSALDAEVRSRNEAIRLKKKMEGDLNEIE 1632

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
             +    +       K     + Q   +Q  +  +L       +  L+E   L  +     
Sbjct: 1633 IQLSHANRQAAETLKHLRSVQGQLKDTQLHLDDAL-----RGQEDLKEQ--LAIVERRAN 1685

Query: 497  ILQEQYQELADIRYDNNELQKLW-SFLFS-----DFVEQKYFLPEEIHQRLCERGFGELL 550
            +LQ + +EL          +KL    L         +  +        ++L E    +L 
Sbjct: 1686 LLQAEVEELRATLEQTERARKLAEQELLDSNERVQLLHTQNTSLIHTKKKL-ETDLMQLQ 1744

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
             +++   RDA       +  I D     ++          L R K+ +E+ +  +  + +
Sbjct: 1745 SEVEDASRDARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLD 1804

Query: 611  AEKTAIL---ISILHEVHIQIHQIE 632
              +   L      + ++  +I ++E
Sbjct: 1805 EAEQLALKGGKKQIQKLETRIRELE 1829


>gi|289619935|emb|CBI53379.1| unnamed protein product [Sordaria macrospora]
          Length = 1184

 Score = 41.0 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 68/222 (30%), Gaps = 27/222 (12%)

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW-KKNARHRDQKGPSQRLMQSSLVK 473
           I  ++ +  + Q + D++  L  +         +   +K A+   QK   + L+      
Sbjct: 449 ISKEREQKEFEQQLLDKIDALETEARGLRDNQDKLLDEKYAKAWYQKNKEENLLGKLNQL 508

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            + +KK       L         +  ++   +         ++KL   L     +     
Sbjct: 509 EEENKKLRTSHHNL------KSQLTDKEADAIDMRD----NVRKLREQLEETTAQVAELH 558

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             +      +    + ++ L+ +           +    +V         L     +  R
Sbjct: 559 QNQAELHQNQAALEDDIEALENE----------RDDAYEEVEAERHNIGELQYNLEMQGR 608

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQ 634
           +  E+E+ +     +  A +         E+   +  +++++
Sbjct: 609 RIAELEQHLNATRGELNATRAQKA-----EIQADLQDKLDNE 645


>gi|317129869|ref|YP_004096151.1| MutS2 family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474817|gb|ADU31420.1| MutS2 family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 788

 Score = 41.0 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 15/135 (11%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
           A + +D   L+  +  L         F        L +    +    +           A
Sbjct: 466 ASVEFDVETLRPTYRLLIGVPGRSNAFAISRRLG-LSDTIIEDAKSHITADTNKIENMIA 524

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKE--------EIEKQIAQVTAKGEA------ 611
           + E++  +  +  +++  L K    L +Q E        E EK + Q   K E       
Sbjct: 525 SLESSRKNAEREMEESELLRKEAEQLHQQLEKEFEKLQMEREKILQQAEEKAEQSLNKAT 584

Query: 612 EKTAILISILHEVHI 626
            +   +IS L E+  
Sbjct: 585 AEAEKIISELREIQR 599


>gi|256088117|ref|XP_002580205.1| hypothetical protein [Schistosoma mansoni]
 gi|238665719|emb|CAZ36444.1| expressed protein [Schistosoma mansoni]
          Length = 466

 Score = 41.0 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 26/255 (10%), Positives = 83/255 (32%), Gaps = 13/255 (5%)

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL-FQKYITEHSGYGRYWKKN 453
           +    +  +    L+  I  I+D+    Y +    ++++    ++ +           ++
Sbjct: 171 YANHQKAEKTIEKLRIDITRIQDEYEADYEANRTANQVKLRQLEEAMHIVQEENTRLTRD 230

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
               + +  +  L  S+       +    +E  ++ +L+     L    +  ++     +
Sbjct: 231 KHQLELEVSTLNLELSNASNDGDIEHKLRKELKIIKSLLAEKEAL--IIELSSNPSDSQS 288

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER---------GFGELLKQLDRQVRDAGLWS 564
           +++KL   +    +E+      E  QRL                  + +D+   +     
Sbjct: 289 QIKKLRDRVPRSELERLEAKIREFEQRLDIETSNRVRIQYSLDRAKETIDQLTNERDKLI 348

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
                     R+  +Q     +     +R+    +++  +            L S   E+
Sbjct: 349 IIEANEREQNRKLSRQLREAQQDENEATRRATTAQRRAEEAQMDANKAMHEALCSRA-EM 407

Query: 625 HIQIHQIESQEAMIE 639
           +  + + +  EA+++
Sbjct: 408 NALLRRTQDLEALVK 422


>gi|13432175|sp|P13538|MYSS_CHICK RecName: Full=Myosin heavy chain, skeletal muscle, adult
          Length = 1939

 Score = 41.0 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 84/277 (30%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  +L   +    +       +      ELE   K     ++D +      
Sbjct: 1351 EEEQEAKGELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1410

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1411 NAKCASLEKTKQRLQNEVEDLMVDVERSNAACAALDKKQKNFDKILAEWKQKYEETQTEL 1470

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+  + L     E         
Sbjct: 1471 EASQKESRSLSTELFKMKNAYEESLDHLETLKRENKNLQQEIADLTEQIAEGGK------ 1524

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +A++ +     +       R   L  +  +
Sbjct: 1525 -----------AVHELEKVKKHVEQEKSELQASLEEAEASLEHEEGKILR---LQLELNQ 1570

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            I+ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1571 IKSEIDRKIAEKDEEIDQLKRNHLRIVESMQSTLDAE 1607


>gi|332358678|gb|EGJ36501.1| cell division protein Smc [Streptococcus sanguinis SK355]
          Length = 1178

 Score = 41.0 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 46/373 (12%), Positives = 107/373 (28%), Gaps = 59/373 (15%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             I    D +        +  D+    +  G   +   +      +       +      
Sbjct: 102 RHIYRSGDSEYKIDGKKVRLRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIF 161

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK---------------DQK 419
              +  L     ++ETE++   T D    LE  +    + IK               D +
Sbjct: 162 EEAAGVLKYKTRRKETESKLSQTQDNLDRLEDIIYELESQIKPLEKQAETAKRFLSLDGQ 221

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y   +  +L    +K I          ++ A +  ++   +   Q+   K     +
Sbjct: 222 RRELYLDVLVAQLTANKEKLIKAEEDLTNIQQELAAYYSKRDELEVENQTLKAKRHELNQ 281

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDN-----------NELQKLWSFL--FSDF 526
               +     +L+    ++ +  +++   + ++             L  L   L      
Sbjct: 282 TLSDDQ---ASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLAQIESN 338

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           +E K     +I  +L +       + +     +   +S   +  I  +R+   Q + L +
Sbjct: 339 IEDKQAELSQIAAKLSDNE-----QSIASLEAELVDFSDDPDQLIEHLRE---QYVKLMQ 390

Query: 587 RFRLLSRQKEEIEKQIA--------------------QVTAKGEAEKTAILISILHEVHI 626
               LS     +E Q+A                    + +   E      L      +  
Sbjct: 391 EEANLSNDLTSLESQLASELKLAESKKADYAKLQADLEASQAQEQAGLEELEIARQALKN 450

Query: 627 QIHQIESQEAMIE 639
            +   +SQ  ++E
Sbjct: 451 LLADYQSQVQLVE 463



 Score = 37.9 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 95/282 (33%), Gaps = 12/282 (4%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             +  +  ++V  L        +  E+ +    +  A      +  + +   +  R+  +
Sbjct: 221 QRRELYLDVLVAQLTANKEKLIKAEEDLTNIQQELAAYYSKRDELEVENQTLKAKRHELN 280

Query: 426 QAIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           Q + D       L +L      +         + A  R +       +   L + + + +
Sbjct: 281 QTLSDDQASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLAQIESNIE 340

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE--QKYFLPEEI 537
               E + +   ++         +    + + ++   +L   L   +V+  Q+       
Sbjct: 341 DKQAELSQIAAKLSDNEQSIASLEA-ELVDFSDDP-DQLIEHLREQYVKLMQEEANLSND 398

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L  +     LK  + +  D     A  EA+    + G ++     +  + L    + 
Sbjct: 399 LTSLESQ-LASELKLAESKKADYAKLQADLEASQAQEQAGLEELEIARQALKNLLADYQS 457

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             + + ++ A  + ++T  +  +L ++  +  +  S EA+++
Sbjct: 458 QVQLVEKLEADYKHQQT-KMFELLDDLKNKQARSNSLEAILK 498


>gi|321476144|gb|EFX87105.1| myosin heavy chain isoform 2 [Daphnia pulex]
          Length = 1946

 Score = 41.0 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 27/263 (10%), Positives = 80/263 (30%), Gaps = 12/263 (4%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  ++    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRAIDSMQASLEAEAKGKAEALRMKKKLESDINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQKGPSQR-LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++     +Q  L +    +  L ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKSIKRYQQSIKETQSALEEEQRNRDDLREQYGIAER-------RANALQGEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQV 557
             +    +   +   ++  + L     +      +        R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRARRQAETELADAHEQLHDLTAQAASSSAAKRKMESELQTLHADLDDMI 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +        +  +VD  +   +  A  +  +   +Q++ +E Q+ ++  + +  +   L
Sbjct: 1745 NETKNSEEKAKKAMVDAARLADELRAEQEHAQAQEKQRKALELQVKELQVRLDESENNAL 1804

Query: 618  ISILHEVHIQIHQIESQEAMIEG 640
                  +     ++   E  ++G
Sbjct: 1805 KGGKKAIQKLEERVRGLETELDG 1827


>gi|312283253|dbj|BAJ34492.1| unnamed protein product [Thellungiella halophila]
          Length = 229

 Score = 41.0 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            +L+ +  +             D       A+ +  + R  +++ +++   + +   + +
Sbjct: 83  DKLNEKFTELSSILEPGRLPKTDKVAIINDAIRMVNQVRDEAQKLKDLNSSLQEKIKELK 142

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
            EK   L     ++ I+  +IE Q   I+
Sbjct: 143 DEK-NELRDEKQKLKIEKERIEQQLKAIK 170


>gi|311270829|ref|XP_001924463.2| PREDICTED: myosin-XVIIIb-like [Sus scrofa]
          Length = 2556

 Score = 41.0 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 25/251 (9%), Positives = 76/251 (30%), Gaps = 28/251 (11%)

Query: 410  NCINHIKDQKLRYYYSQAIRDRLQQLFQ-KYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
                       R        + ++QL Q +   E               D++   + + Q
Sbjct: 1678 RLWKLESSALEREKIQNQQENTIKQLEQLRQRFELEIERMKQLHQKDREDKEEELEDVRQ 1737

Query: 469  SSLVKGKLSKKPSLREAALLLTLINHPA----ILQEQYQELADIRYDNNELQKLWSFLFS 524
            S   +    +    +E      +++       ++     ++    +D    ++L   L  
Sbjct: 1738 SCQKRLHQLEMQLEQEYEEKQLVLHEKQDLEGLIGTLCDQIGHRDFDVE--KRLRRDLRR 1795

Query: 525  DFVEQKYFLP-----EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
                           E+    + +    ++  QL++          T +A   D+   + 
Sbjct: 1796 THALLSDVQLLLGTMEDSKTSVSKEELEKVQSQLEQSEAKCEDALKTQKALTADLESMHS 1855

Query: 580  QALALYK-------RFRLLSRQKEEIEKQIAQVTAKGEA---------EKTAILISILHE 623
            +  ++ +       +   L  ++ ++ K+I +                 ++A  I  + E
Sbjct: 1856 ELESMTRSKSLVDEQLYRLQFERADLLKRIDEDQDDLNDLMQKHKDLIAQSAADIGQIQE 1915

Query: 624  VHIQIHQIESQ 634
            + +Q+ + + +
Sbjct: 1916 LQLQLEEAQKE 1926



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 74/213 (34%), Gaps = 5/213 (2%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + +  +L +L + Y    +   +  +K  R       ++ L++S   + +  ++   + 
Sbjct: 1539 RKELEQKLGELQRAYDGAKTAAQQLKRKCLRLTCDLEDTRFLLESQQSRNRELERKQKKF 1598

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNN-ELQKLWSFLFSDFVE--QKYFLPEEIHQRL 541
             A L   +      +   + LA        EL  L   L     E  Q     E +    
Sbjct: 1599 DAQLAQALGESVFEKGLRERLAQENTSVRCELGSLQQHLKQKEQETLQLKQEVEMLQAHK 1658

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             E      L +         LW    E++ ++  +   Q     K+   L ++ E   ++
Sbjct: 1659 QELLASPSLGENGIAGLKERLWKL--ESSALEREKIQNQQENTIKQLEQLRQRFELEIER 1716

Query: 602  IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            + Q+  K   +K   L  +      ++HQ+E Q
Sbjct: 1717 MKQLHQKDREDKEEELEDVRQSCQKRLHQLEMQ 1749


>gi|289618213|emb|CBI54937.1| unnamed protein product [Sordaria macrospora]
          Length = 489

 Score = 41.0 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 71/200 (35%), Gaps = 12/200 (6%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
             +  + +   + +++  +  ++      L   S  K + S     R+  +         
Sbjct: 22  DAFNEKLAQAEKEYQEALKKYNEVKAKVELAAPSKNKDQPSPTQKKRQELISQL----NE 77

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           I Q+Q           +++++L   L S   EQK    +              +++L+++
Sbjct: 78  IRQQQAGGKNARTSKLDQIKRLDEQLRSRIAEQKTARSK--VNFKSTEELDREIERLEKE 135

Query: 557 VRDAGLWSATTEANIVDV------RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           V    +     +  + ++      R+ +       K+  +L  + +EI+  +    AK  
Sbjct: 136 VNGGMMKLVDEKKALAEISNLRKQRKSFAGFDDAQKQIDVLKAKIKEIKDSLEDPEAKAL 195

Query: 611 AEKTAILISILHEVHIQIHQ 630
           +EK   L + L  +  +  +
Sbjct: 196 SEKYNKLQAELDAIKAEQDE 215


>gi|281337711|gb|EFB13295.1| hypothetical protein PANDA_004042 [Ailuropoda melanoleuca]
          Length = 2329

 Score = 41.0 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 36/374 (9%), Positives = 104/374 (27%), Gaps = 29/374 (7%)

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDD----PGLRAAYKAIDLVLCHLI 343
           Q  ++  ++          L         I    D          +      +  +    
Sbjct: 347 QYEMEQELAFYKIDAKFEPLNYYPSEYVEIDKTPDESPYIGKSRYKRNMFTTESYIIANA 406

Query: 344 PGNRVNFVLLSRGEDP---DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE 400
              ++  +    GE P      +R +     +    E           E  +       +
Sbjct: 407 QTVKIKKMEPEEGEQPRNEHVNLRAHTSLDIQLEDKEKKISAAQTRLSELHDEIEKAEQQ 466

Query: 401 RAELEIHLKNCINHIK----DQKLRYYYSQAIRDRLQQL--FQKYITEHSGYGRYWKKNA 454
             +     K     I+     +  +    + +  ++Q L   ++   +        ++  
Sbjct: 467 ILKATEEFKQLEEAIQLKKISESEKDLLFKQLSGKIQLLRKLRQEAMDLETQTEKQRQEI 526

Query: 455 RHRDQKGPSQRLMQSSLVKGKLS-----KKPSLREAALLLTLINHPAILQEQYQELADIR 509
             +  +    ++   SL            +   +E  L +    +  +     + L+ I 
Sbjct: 527 DEKQNEIKDLQIAIDSLDSRDPKHCHMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIA 586

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
            +  E++ L   L    +     L +++   +   G  E L+ +  Q   A       + 
Sbjct: 587 KETEEIKDLEQQLTEGQIAANEALKKDLESVIS--GLQEYLETVKSQAAQAQSECRKLQD 644

Query: 570 NIVDVRQGYQQALALYKRFRLL-------SRQKEEIEKQIAQVTAKG-EAEKTAILISIL 621
               + Q   +      +  ++        ++  E+E  + +        ++T   +S  
Sbjct: 645 EKETLLQRLSEVEQERDQLEIVAIDAENMRKELAELESALQEQHEVNVSLQQTQGDLSAY 704

Query: 622 H-EVHIQIHQIESQ 634
             E+  Q+   +++
Sbjct: 705 EAELEAQLKVRDAE 718


>gi|302345323|ref|YP_003813676.1| ATP-dependent chaperone protein ClpB [Prevotella melaninogenica
           ATCC 25845]
 gi|302149089|gb|ADK95351.1| ATP-dependent chaperone protein ClpB [Prevotella melaninogenica
           ATCC 25845]
          Length = 862

 Score = 41.0 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 51/143 (35%), Gaps = 16/143 (11%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSA 565
            I   +    KL         +      +EI +RL +     E +K+ +   + A L   
Sbjct: 388 AIDLMDEAAAKLRME-----RDSVPEELDEISRRLKQLEIEREAIKRENDTEKIAQLDKE 442

Query: 566 TTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI------- 616
             E    +   R  ++    L  + +   ++ E+++ +  +   +G  E+ A        
Sbjct: 443 IAELKEQEHGFRAKWEGERGLVNKIQQDKQEIEQLKYEADRAEREGNYERVAEIRYSRLK 502

Query: 617 -LISILHEVHIQIHQIESQEAMI 638
            L   +  +  Q+   +  +AM+
Sbjct: 503 QLEDDIKNIQQQLQATQDGQAMV 525



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 70/264 (26%), Gaps = 34/264 (12%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + L  +DM              +    +   +     +I        
Sbjct: 220 RIVRGDVPENLKDKQLYSLDMGAMLAGAKYKGEFEERLKSVVKEVMQADGNI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGGGEGAMDAANILKPALARGELRAIGATTLNEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      L++ P  L                   +   L   +             R+ +
Sbjct: 328 ERRFQTVLVDEPDELDAI---------------SILRGLKERYENHHKV-------RIQD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 +K  +R + D  L     +       +   +  ++ +    +SR+ +++E +  
Sbjct: 366 DACIAAVKLSERYISDRFLPDKAIDLMDEAAAKLRMERDSVPEELDEISRRLKQLEIERE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQ 627
            +  + + EK A L   + E+  Q
Sbjct: 426 AIKRENDTEKIAQLDKEIAELKEQ 449


>gi|195342660|ref|XP_002037918.1| GM18526 [Drosophila sechellia]
 gi|194132768|gb|EDW54336.1| GM18526 [Drosophila sechellia]
          Length = 567

 Score = 41.0 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 47/151 (31%), Gaps = 21/151 (13%)

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
            L +      EL  ++     + +  +     ++ +   ++    LL++L          
Sbjct: 323 NLENYELQRQELISMYEHRIEELIRSQDSATSDLKRSHNDK-VEALLQKLAECNTRYSDM 381

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQK-----------EEIEKQIAQVTAKGEAE 612
               E     +R+  +Q   L ++      ++           +E E +I++     +  
Sbjct: 382 VPDYEQAKQRIRELEKQLEDLQRKLVEHEEKQNKMYLHMYQQGQEAE-RISRADQALDLA 440

Query: 613 KTA--------ILISILHEVHIQIHQIESQE 635
           +           L+  L     ++  I + E
Sbjct: 441 QRQPESKVSINELLHQLQSTQDELENIRASE 471


>gi|195114078|ref|XP_002001594.1| GI16038 [Drosophila mojavensis]
 gi|193912169|gb|EDW11036.1| GI16038 [Drosophila mojavensis]
          Length = 1081

 Score = 41.0 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 93/290 (32%), Gaps = 26/290 (8%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IR 429
           EKL  +         +   E +         + +          KD+ L  +      I 
Sbjct: 528 EKLSQQEKLNEARHSESLEEQQRLLENINYLQRQNETLQTELMAKDESLEKFSLSECGIE 587

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA---- 485
           +  ++L            +  +   +   +K    R +   L + K S      E     
Sbjct: 588 NLRRELALLKEENEKQAQQAKEMFEQQLAEKAEQVRQLSKELHEIKSSSDTLESERAHVT 647

Query: 486 ---ALLLTLIN-HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK--YFLPEEIHQ 539
               +L T I      ++E  Q+L +I    N  +   S L     EQ+      + + +
Sbjct: 648 DECEILQTEIRMRDEQIKELSQQLDEISTQLNVQKADSSALDEMLTEQQTQNVDSKTLLE 707

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRLLSRQKEE 597
            L         ++L+ Q + +GL      +   +   ++  ++   L +    L +Q ++
Sbjct: 708 ELQAANAALAKEKLELQQQLSGLQDQLRASGDSNAVIQKQQKENAQLMEAKAALEQQLQQ 767

Query: 598 ------------IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                        EK +     K + E  A L + L E   Q+ +  ++E
Sbjct: 768 ESEIAKANRAEAAEKDLQLNELKQQLEDQAKLYAQLVESQEQLKRERAEE 817



 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 66/218 (30%), Gaps = 18/218 (8%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              ++ R+ QL  +   E              +          Q         +K    E
Sbjct: 438 INELKLRISQLESQLSDERKKSEELQFTIDEAQFCGDEMNAQSQVY------KEKIQDLE 491

Query: 485 AALLLTLINHPAI--LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
             +   +   P++  +    + +A         Q L + L     +Q+        + L 
Sbjct: 492 KKITKLVSATPSLQSIPPVEESVALAN-----AQSLIAELQEKLSQQEKLNEARHSESLE 546

Query: 543 ERG-FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
           E+    E +  L RQ           + ++            L +   LL   KEE EKQ
Sbjct: 547 EQQRLLENINYLQRQNETLQTELMAKDESLEKFSLSECGIENLRRELALL---KEENEKQ 603

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             Q     E +        + ++  ++H+I+S    +E
Sbjct: 604 AQQAKEMFEQQLAEKA-EQVRQLSKELHEIKSSSDTLE 640


>gi|55957502|emb|CAI15526.1| lamin A/C [Homo sapiens]
          Length = 513

 Score = 41.0 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 94/281 (33%), Gaps = 34/281 (12%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             R     A       +L       KR  E    +   + A+LE  L      ++D+ LR
Sbjct: 72  QARLKDLEALLNSKEAALSTALSE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLR 130

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                   +RLQ + ++   + + Y    ++  R  + +       +    + +L+    
Sbjct: 131 RV---DAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ 187

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                          +  +   ++   +    EL+K +S    +  +        +    
Sbjct: 188 --------------ELRAQHEDQVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAH 230

Query: 542 CERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            E     + +  L  Q+       A  EA + D+     +     +R         E E+
Sbjct: 231 EELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRL------LAEKER 284

Query: 601 QIAQVTAKGEA--EKTAILISILHEVHIQIHQ----IESQE 635
           ++A++ A+ +   ++   L+ I   + ++IH     +E +E
Sbjct: 285 EMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEE 325


>gi|328946756|gb|EGG40894.1| cell division protein Smc [Streptococcus sanguinis SK1087]
          Length = 1178

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 45/373 (12%), Positives = 106/373 (28%), Gaps = 59/373 (15%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             I    D +        +  D+    +  G   +   +      +       +      
Sbjct: 102 RHIYRSGDSEYKIDGKKVRLRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIF 161

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK---------------DQK 419
              +  L     ++ETE++   T D    LE  +    + IK               D +
Sbjct: 162 EEAAGVLKYKTRRKETESKLSQTQDNLDRLEDIIYELESQIKPLEKQAETAKRFLSLDGQ 221

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y   +  +L    +K            ++ A +  ++   +   Q+   K     +
Sbjct: 222 RRELYLDVLVAQLTANKEKLTKAEEDLRNIQQELAAYYSKRDELEVENQTLKAKRHELNQ 281

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDN-----------NELQKLWSFL--FSDF 526
               +     +L+    ++ +  +++   + ++             L  L   L      
Sbjct: 282 TLSDDQ---ASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLAQIESN 338

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           +E K     +I  +L +       + +     +   +S   +  I  +R+   Q + L +
Sbjct: 339 IEDKQAELSQIAAKLSDNE-----QSIAALEAELADFSDDPDQLIEHLRE---QYVKLMQ 390

Query: 587 RFRLLSRQKEEIEKQIA--------------------QVTAKGEAEKTAILISILHEVHI 626
               LS     +E Q+A                    + +   E      L      +  
Sbjct: 391 EEANLSNDLTSLESQLASELKLAESKKADYAKLQADLEASQAQEQAGLEELEIARQALKN 450

Query: 627 QIHQIESQEAMIE 639
            +   +SQ  ++E
Sbjct: 451 LLADYQSQVQLVE 463



 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 93/282 (32%), Gaps = 12/282 (4%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             +  +  ++V  L        +  E+      +  A      +  + +   +  R+  +
Sbjct: 221 QRRELYLDVLVAQLTANKEKLTKAEEDLRNIQQELAAYYSKRDELEVENQTLKAKRHELN 280

Query: 426 QAIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           Q + D       L +L      +         + A  R +       +   L + + + +
Sbjct: 281 QTLSDDQASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLAQIESNIE 340

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE--QKYFLPEEI 537
               E + +   ++         +      + ++   +L   L   +V+  Q+       
Sbjct: 341 DKQAELSQIAAKLSDNEQSIAALEA-ELADFSDDP-DQLIEHLREQYVKLMQEEANLSND 398

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L  +     LK  + +  D     A  EA+    + G ++     +  + L    + 
Sbjct: 399 LTSLESQ-LASELKLAESKKADYAKLQADLEASQAQEQAGLEELEIARQALKNLLADYQS 457

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             + + ++ A  + ++T  +  +L ++  +  +  S EA+++
Sbjct: 458 QVQLVEKLEADYKHQQT-KMFELLDDLKNKQARSNSLEAILK 498


>gi|328783366|ref|XP_392064.4| PREDICTED: hypothetical protein LOC408519 [Apis mellifera]
          Length = 1602

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 92/277 (33%), Gaps = 32/277 (11%)

Query: 362  FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI-KDQKL 420
             ++   +  F+ L  ++    D   KR  + R     +   +LE   +     I + +  
Sbjct: 1148 MLQKMEQKQFQDLSQKAQFNKDQQDKRFEQERQLLERNAETDLETLARQQRQQIERAEAQ 1207

Query: 421  RYYYSQAIRDRLQQLFQKYITE-HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    +    +++   ++ + +   G  +  K   +  D     +R     + K KL  +
Sbjct: 1208 QEADLRLASKKIRSEQERELKQFREGLKQELKLLKQEVDLMPKDKRKSAFKIRKEKLEAE 1267

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               RE   L  L                    N   + L   L     E+   +  +  Q
Sbjct: 1268 HEEREKHFLDKL--------------------NESHELLLRRLSDSHREKIALMERQFLQ 1307

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            +  +          +++ R         +  + D        +   +R ++L R ++E+E
Sbjct: 1308 QKQQLMRAREAAIWEQEERHIHEKQQLLKKQLKD--------IFFLQRHQMLIRHEKELE 1359

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
             Q+ ++  + E E           +  +I  +++++E
Sbjct: 1360 -QMKRMNQRKEEELIKRQTVERRNLPKRIRNEMKARE 1395


>gi|321476143|gb|EFX87104.1| myosin heavy chain isoform 1 [Daphnia pulex]
          Length = 1946

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 27/263 (10%), Positives = 80/263 (30%), Gaps = 12/263 (4%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  ++    +     K +       + +   + +L       
Sbjct: 1572 DRRIQEKEEEFENTRKNHQRAIDSMQASLEAEAKGKAEALRMKKKLESDINELEIALDHA 1631

Query: 443  HSGYGRYWKKNARHRDQKGPSQR-LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++     +Q  L +    +  L ++  + E           A+  E 
Sbjct: 1632 NKANAEAQKSIKRYQQSIKETQSALEEEQRNRDDLREQYGIAER-------RANALQGEL 1684

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQV 557
             +    +   +   ++  + L     +      +        R  E     L   LD  +
Sbjct: 1685 EESRTLLEQADRARRQAETELADAHEQLHDLTAQAASSSAAKRKMESELQTLHADLDDMI 1744

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +        +  +VD  +   +  A  +  +   +Q++ +E Q+ ++  + +  +   L
Sbjct: 1745 NETKNSEEKAKKAMVDAARLADELRAEQEHAQAQEKQRKALELQVKELQVRLDESENNAL 1804

Query: 618  ISILHEVHIQIHQIESQEAMIEG 640
                  +     ++   E  ++G
Sbjct: 1805 KGGKKAIQKLEERVRGLETELDG 1827


>gi|297702068|ref|XP_002828021.1| PREDICTED: leucine-rich repeat-containing protein 45-like [Pongo
           abelii]
          Length = 674

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 94/282 (33%), Gaps = 13/282 (4%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                   +L+  +      L +R+ +       +        L++     +   L    
Sbjct: 316 EQKAQDLGELLATAEQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQ 375

Query: 425 SQAIRDRLQ----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              +  + +    QLFQ      S       +  +  ++    +R  + SL   +  +  
Sbjct: 376 VDELERKFRCQQEQLFQTRQELTSMSAELKMRAIQAEERLDMEKRRCRQSLEDSESLRIK 435

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKL-WSFLFSDFVEQKYFLPEEIH 538
            +    +   L      +QE+ Q L   R     EL ++  + L      ++  +  +  
Sbjct: 436 EV--EHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKAAALSERGQAEEELIKAKSQ 493

Query: 539 QRLCERG-FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            RL E+     L  +L    +               V     +A  L  +   L R+ EE
Sbjct: 494 ARLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVADSQTRASQLGLQVEGLRRRLEE 553

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +++++    +  + E+ A +  +  E+  Q  +++++ A  E
Sbjct: 554 LQQEL----SLKDQERVAEVSRVRVELQEQNGRLQAELAAQE 591


>gi|228930864|ref|ZP_04093839.1| hypothetical protein bthur0010_55290 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228828812|gb|EEM74474.1| hypothetical protein bthur0010_55290 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 354

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 52  SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92
           S   +  K  +Y  S  V G+ ++F+  + G SF  ++QRL
Sbjct: 63  SLIIDRKKNQFYWNSRGVNGNVINFVQEVEGASFPGAMQRL 103


>gi|242022073|ref|XP_002431466.1| hypothetical protein Phum_PHUM530130 [Pediculus humanus corporis]
 gi|212516754|gb|EEB18728.1| hypothetical protein Phum_PHUM530130 [Pediculus humanus corporis]
          Length = 479

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 66/226 (29%), Gaps = 15/226 (6%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            +R ++ FQ  +          K     +  K   + +  S   +      P+  E   +
Sbjct: 242 SERFERSFQPNVALAPALHHRPKIECSEKQVKCEPESIEDSKKAELLCPPPPATTERKAV 301

Query: 489 LTLI---NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
           LT++    + + ++              E   +         E+      E+   L +  
Sbjct: 302 LTVVASSRYNSEIELSTDTDDSSSEATGEHGSI------PRGERVVEQVAEVLDALSDAK 355

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL----SRQKEEIEKQ 601
                 ++   V+         EAN+  + +   +   + +    L     R+  +++++
Sbjct: 356 -EATRARVVALVQQLASRLNLEEANVRRLEEENSELRHVQREQEDLLASKDRRIAQLQQR 414

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
           + +  +             +  +  +I    S        G   GR
Sbjct: 415 LQEADSSSNK-SVQPFQDKVIAMEKEIRTSHSDMNGSSEHGATGGR 459


>gi|194042126|ref|XP_001928377.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A
           [Sus scrofa]
          Length = 1376

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616



 Score = 37.2 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 94/260 (36%), Gaps = 23/260 (8%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL----FQKYITEH 443
              + +             + +     I     R    +  ++RL+ L     ++ + + 
Sbjct: 541 HILQEKEEQHQLAVTAYLKNSRKEHQRI---LARRQTIEERKERLESLNIQREKEELEQR 597

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
               +  +K    R ++   +R  +  L + +  KK ++RE       I    +  + ++
Sbjct: 598 EAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTVRERL---EQIKKTELGAKAFK 654

Query: 504 ELADIRYD--NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDA 560
           ++     +  + +       + +  VEQ     +E+ +RL  +    +  ++  R     
Sbjct: 655 DIDIEDLEELDPDF------IMAKQVEQLEKEKKELQERLKNQEKKIDYFERAKRLEEIP 708

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-EIEKQIAQVTAKGEAEKTAILIS 619
            + SA  E  I D+   ++Q          L R+K  E + +++++    +      L +
Sbjct: 709 LIKSAYEEQRIKDM-DLWEQQEEERITTMQLEREKALEHKNRMSRMLEDRDL-FVMRLKA 766

Query: 620 ILHEVHIQIHQIESQEAMIE 639
               V+ +  + + +E + E
Sbjct: 767 ARQSVYEEKLK-QFEERLAE 785


>gi|269997171|ref|XP_002652597.1| lava lamp protein [Culex quinquefasciatus]
 gi|192759134|gb|EDV73629.1| lava lamp protein [Culex quinquefasciatus]
          Length = 2866

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 88/295 (29%), Gaps = 27/295 (9%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               +      A ++L            + E E  S        EL   L+   +     +
Sbjct: 1221 CQELEDKLVKAQQELEEAKQASPSDDLREENEQLSQKMHHLNNELHKLLQQKYSLETSGQ 1280

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
               +    ++++ QQL  +     S   +   + A    +       + S  VK +  K 
Sbjct: 1281 QSQHDLLTLQEKYQQLEDRVQQGESKLQQVANQLADKLKEFETVSEDLASKNVKIEKCKA 1340

Query: 480  PSLREAALLLTLINHPAILQEQYQELAD-----IRYDNNELQ---------KLWSFLFSD 525
                +   +  L  H         E+         + N  LQ          L + L ++
Sbjct: 1341 IIKEKNKEIQRLQEHERKTAYLEDEIKMSQSKLEDFHNQTLQLGRLKADKEDLNAALKAE 1400

Query: 526  FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW--------SATTEANIVDVRQG 577
              + +    +        R   + + +L+R +                  EA     ++ 
Sbjct: 1401 SEKVRQLELDLELADEQSRKLRDQIAKLERGISLVEQRRNSLERQKKLLGEALDERTQEY 1460

Query: 578  YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             +    L +R   L++  E IE ++ +       ++   L   L +V  Q  Q++
Sbjct: 1461 SEHEDELMRRLANLTQHDEAIEHKLKEKE-----DELLELGETLRDVEHQRDQLQ 1510


>gi|153930866|ref|YP_001385258.1| TP901 family phage tail tape measure protein [Clostridium botulinum A
            str. ATCC 19397]
 gi|152926910|gb|ABS32410.1| phage tail tape measure protein, TP901 family [Clostridium botulinum
            A str. ATCC 19397]
          Length = 1714

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 74/241 (30%), Gaps = 24/241 (9%)

Query: 406  IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
                  +   K + LR  Y + +         + I     + +   +     +      +
Sbjct: 1336 QEAIVVVQSKKVEDLRKRY-EDLAYTFGVTADEAIKAREEFEKARVELENMANAVSEVSK 1394

Query: 466  LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR-YDNNELQKLWSFLFS 524
             +   + K + +   +LRE       +   A+     +E+ ++  +    L ++ S    
Sbjct: 1395 KIAEDINKFQKTVIDALRERYAQQFKLEEDAL----KEEITNLDNWKKESLDRINSVYDE 1450

Query: 525  DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
               + +     +I          E ++ +D   +         +   +      + ++  
Sbjct: 1451 RIKKIEESSKAQI------EALQEEIQAIDDAEKAKNR--NDEDEQDIKKINDLKASIEF 1502

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAK----GEAEKTAILISILHEVH------IQIHQIESQ 634
                    + K+E+EK I +   K       ++ A L   +  +        +I Q + Q
Sbjct: 1503 EHNDFNKEQLKKELEKAIEEREEKLRKRNIEDRKAELNEQIKNIQDSTNKEKEILQKQKQ 1562

Query: 635  E 635
            E
Sbjct: 1563 E 1563


>gi|149526461|ref|XP_001519671.1| PREDICTED: similar to mKIAA1052 protein, partial [Ornithorhynchus
           anatinus]
          Length = 1267

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 67/206 (32%), Gaps = 7/206 (3%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS-LRE 484
           + + D L +  Q    +H       ++  +    +   Q   +    + +L +  +   E
Sbjct: 373 RQLSDLLAEKRQGVEKDHERKMERLREEHQLALARIRQQYAEEERQQRTELLEGLTGELE 432

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNEL-QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
                  +   ++ QE   +L D+R  + E  +KL           K          + E
Sbjct: 433 QLRRAHHVERESVRQELDGQLDDLRLRHREQEKKLHDLALELETRTKATRASLAQLDVQE 492

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
               +  +QL  + +          A+   +R+   +  AL +  R L R  EE+  Q  
Sbjct: 493 EMVRKKRQQLLEEEKQIAKEREEAAASSRHLREARAEQAALGEATRELRRAVEELRAQRT 552

Query: 604 QVTAKGEAEKTAILISILHEVHIQIH 629
            + +     +   L      +  +I 
Sbjct: 553 DLES-----QVEELQGRSQRLQQRIR 573



 Score = 37.6 bits (85), Expect = 6.3,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 56/196 (28%), Gaps = 8/196 (4%)

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INHPAILQ 499
            + S  G    + A    Q        +  + K    K   LRE   L    I      +
Sbjct: 356 AQFSTAGGGGSREAGPGRQLSDLLAEKRQGVEKDHERKMERLREEHQLALARIRQQYAEE 415

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVE-----QKYFLPEEIHQRLCERGFGELLKQLD 554
           E+ Q    +     EL++L      +                +  R  E+   +L  +L+
Sbjct: 416 ERQQRTELLEGLTGELEQLRRAHHVERESVRQELDGQLDDLRLRHREQEKKLHDLALELE 475

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            + +      A  +     VR+  QQ L   K+      +     + + +  A+      
Sbjct: 476 TRTKATRASLAQLDVQEEMVRKKRQQLLEEEKQIAKEREEAAASSRHLREARAE--QAAL 533

Query: 615 AILISILHEVHIQIHQ 630
                 L     ++  
Sbjct: 534 GEATRELRRAVEELRA 549


>gi|145487942|ref|XP_001429976.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397070|emb|CAK62578.1| unnamed protein product [Paramecium tetraurelia]
          Length = 853

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 94/280 (33%), Gaps = 13/280 (4%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD  ++   +   +K+   +     +      E +   +   + EL+ + K         
Sbjct: 188 PDLIVKKKNEKTPQKIDNNNKTYTFLEPVEFKETQLNRSLQSKTELQNNCKKKKLSPSLD 247

Query: 419 KLRYYYSQAI--------RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            ++    +           + L+    + ++      +  +       Q+    + +++ 
Sbjct: 248 LIKKKDIKPFKPFKPDSQSESLEIRTSEDLSMREDSIKRKENIKLQNKQEKKLSKDLENF 307

Query: 471 LVKGKLSKKPSLR--EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
             K KL K    +  EA +   L      +     +    + +  E+ KL         +
Sbjct: 308 NKKEKLQKIEKKKHSEADIKQQLEKSTKQIIPMIDKKERKKKERLEIDKLRKEKRELERQ 367

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
           Q+     +I +RL +    +  ++L+++  +        +     + +  Q  + L ++ 
Sbjct: 368 QQLKEKNQILERLEKEKQNK--EKLEKERLEKERLDKFEKERTERLEKERQDRIELLEKQ 425

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           R    +++ +EK+  +   + +  +       L  +  ++
Sbjct: 426 RQEREKQDRLEKERQERLERSDKHRQKET-QELESIIEKL 464


>gi|115373083|ref|ZP_01460385.1| hypothetical protein STIAU_8567 [Stigmatella aurantiaca DW4/3-1]
 gi|115369839|gb|EAU68772.1| hypothetical protein STIAU_8567 [Stigmatella aurantiaca DW4/3-1]
          Length = 1980

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 76/282 (26%), Gaps = 25/282 (8%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI-R 429
             +  + ++        K           DE++EL +          D        + +  
Sbjct: 1296 LQARLHQASGETARAAKTLVLAARAAKADEQSELLLESAGLWEEAGDAAEALEVLERLVA 1355

Query: 430  DRLQQLFQKYITEH-SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            +  + L      E     G   +             RL  +  +  +   +  +REA  L
Sbjct: 1356 EAPKALTPSEWAERFLRLGAPARAVEVGFQPALAEGRLSDALALAERAGDEVRVREA--L 1413

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              L+  P +       L        +   L S L     E+       +   + +     
Sbjct: 1414 WALVAEPDVSTVSVDRLVKGLRAEGDFAGLLS-LAERLAERDPERSTALRDEVLDAASAP 1472

Query: 549  ---LLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALYKRFRLLSRQKEEI----- 598
                L+  ++                ++  + +   + + ++ R    +R+ E +     
Sbjct: 1473 GELRLRAFEQLSVQKHFSERLPGLLTSLGQLPEALAEVVLIHVRSLPAARRIESLGVAAE 1532

Query: 599  ----------EKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
                       +++    A+G  E     +  L E    + +
Sbjct: 1533 HWPERRAELLRERLGHERAEGHREDAEQTLEQLIEGETNLEE 1574


>gi|329663173|ref|NP_001193243.1| eukaryotic translation initiation factor 3 subunit A [Bos taurus]
 gi|297491022|ref|XP_002698584.1| PREDICTED: eukaryotic translation initiation factor 3, subunit A
           [Bos taurus]
 gi|296472593|gb|DAA14708.1| eukaryotic translation initiation factor 3, subunit A [Bos taurus]
          Length = 1376

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616



 Score = 37.2 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 94/260 (36%), Gaps = 23/260 (8%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL----FQKYITEH 443
              + +             + +     I     R    +  ++RL+ L     ++ + + 
Sbjct: 541 HILQEKEEQHQLAVTAYLKNSRKEHQRI---LARRQTIEERKERLESLNIQREKEELEQR 597

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
               +  +K    R ++   +R  +  L + +  KK ++RE       I    +  + ++
Sbjct: 598 EAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTVRERL---EQIKKTELGAKAFK 654

Query: 504 ELADIRYD--NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDA 560
           ++     +  + +       + +  VEQ     +E+ +RL  +    +  ++  R     
Sbjct: 655 DIDIEDLEELDPDF------IMAKQVEQLEKEKKELQERLKNQEKKIDYFERAKRLEEIP 708

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-EIEKQIAQVTAKGEAEKTAILIS 619
            + SA  E  I D+   ++Q          L R+K  E + +++++    +      L +
Sbjct: 709 LIKSAYEEQRIKDM-DLWEQQEEERITTMQLEREKALEHKNRMSRMLEDRDL-FVMRLKA 766

Query: 620 ILHEVHIQIHQIESQEAMIE 639
               V+ +  + + +E + E
Sbjct: 767 ARQSVYEEKLK-QFEERLAE 785


>gi|169646803|ref|NP_001112366.1| synaptonemal complex protein 1 [Danio rerio]
          Length = 1000

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 81/262 (30%), Gaps = 34/262 (12%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
           E +       + +A  E          ++++        +  ++    ++          
Sbjct: 565 EKKVLQCQLMESKANAEREKTEVEKLEREKRQLQEQVDILSAKITGQDEESRNVQEQLRE 624

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
             K   +    K    + + + L   K   +   +          H   L+E  +   D+
Sbjct: 625 SGKGAKKELLMKDKQIKALDTKLTNLKTKLETKTK---------AHEECLKEVKELKEDL 675

Query: 509 RYD----NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
                  N ELQK+ S L      +     E              + +L +   +A    
Sbjct: 676 DRVKKHHNEELQKIRSDLHEKSTSEAQLDLE--------------VHKLKQTATEALKNK 721

Query: 565 ATTEANIVDVRQGYQQALALYKRF--RLLSRQKEEI-EKQIAQVTAKGEAEKTAILISIL 621
             TE             +  +K    ++L  +  E+ EK++ +           + +S L
Sbjct: 722 DETEIKCQQKISDMVALMERHKHEYDKMLEEKDAELSEKRMKEAEVNASKASLELELSHL 781

Query: 622 H----EVHIQIHQIESQEAMIE 639
                E+  Q+ ++++++ +++
Sbjct: 782 QVENDELREQLEKLKAEKVVLK 803


>gi|327408533|emb|CCA30016.1| hypothetical protein, conserved [Neospora caninum Liverpool]
          Length = 413

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 86/275 (31%), Gaps = 14/275 (5%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
              +          + EN      +E   +    +     +K++  R    +   + L++
Sbjct: 4   RERARSAQKDFLISQLENALTEIKEEVGGVVERKEALEEAVKEKTERAREMEERAETLEK 63

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
             Q+            K               + S    G L  + + ++A +       
Sbjct: 64  RVQELEGALQKLEPEQKPGVSLSLPAASRFPSVSSPDEDGALQARIAKKDAEVARL---- 119

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
               ++Q   L+ +     + +           EQ      +I     E    +  + L 
Sbjct: 120 ----EQQVARLSQLLATVEQNR---GQELQSLTEQLAASQNKIKDLESEASGNQTKRSLW 172

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-EIEKQIAQVTAKGEAEK 613
           +  + A L      ++    +    + LAL +      ++ E +  ++ A    +G   +
Sbjct: 173 QGRQIAQLREELLLSDRE--KDSLHRELALKEEAEAALQELEFDKSREAACAEREGLTSR 230

Query: 614 TAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
              +   L E+ I+   ++ + A+++   +  GR+
Sbjct: 231 AEEVERHLQELRIERDMLQQRIAVLQRELETLGRV 265


>gi|312214597|emb|CBX94588.1| similar to cytoskeleton assembly control protein Sla2
           [Leptosphaeria maculans]
          Length = 1147

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 105/312 (33%), Gaps = 38/312 (12%)

Query: 358 DP---DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE--RAELEIHLKNCI 412
           DP   + F +   K   E+   E   L     + +   +      +    E +       
Sbjct: 397 DPEPINEFWKDNQKRQQEEFDAEQRRLAQQWEEAQRLQQQQALQAQREFEEQQRLQAEQA 456

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
              ++Q +R  Y Q  + RL +L ++ +   + Y R      ++  +    +  +     
Sbjct: 457 RLAQEQLMREQYQQQTQGRLAELERENLNARAQYERDQLMLQQYDQRMKALEGEINQMNQ 516

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADI--RYDNNELQKLWS----FLFSDF 526
             +        +   L   +N     + +Y+ LA +  +  +  LQ L       L ++ 
Sbjct: 517 NFQQQMGSRDDQIRALQEQLN---TWRSKYESLAKLYSQLRHEHLQLLQKFKAVQLKANS 573

Query: 527 VEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA- 583
            ++     +++ + L  +     +++++ DR + +    +      I  +++  + AL  
Sbjct: 574 AQEAIDGRDKLQRELKSKNIELADMIRERDRALMEKDRHTGGYREEIEKLKRELRSALER 633

Query: 584 -----------LYKRFRLLSRQKEEIEKQIAQVTA----------KGEAEKTAILISILH 622
                      L       +R+  ++E+ +   T           +G++E    L     
Sbjct: 634 ADNAERGKGSELSSMLNRHNREIADLEEALRSKTRALEDFQMKYREGDSELERQLREKEE 693

Query: 623 EVHIQIHQIESQ 634
           E+ I    ++  
Sbjct: 694 ELEIFRAGMDQT 705


>gi|308512587|ref|XP_003118476.1| CRE-TAG-278 protein [Caenorhabditis remanei]
 gi|308239122|gb|EFO83074.1| CRE-TAG-278 protein [Caenorhabditis remanei]
          Length = 1182

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 85/275 (30%), Gaps = 16/275 (5%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                    +E+     +       +R  E       +   ++    +  +   KD + R
Sbjct: 181 QTLEETVAEYERQKYNVMGTFSEYRERVAERERKLEAEYSGKIIALSEEVLGAKKDFEAR 240

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               QA++D+ ++  ++ + +     +   +    R        L Q  +++ +  ++  
Sbjct: 241 MKSFQALQDKFEREKEQALEKLRKEHQKEIQVLEQRFSDTQLLNLEQKYILEIQRLEEER 300

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                         ++  E+ +            Q L+    +          E +    
Sbjct: 301 K-------------SLRSEKERLGETFEMKLRRAQSLYETELTAAKMLYTKELEALRDH- 346

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            E    ELL + D            ++ +  D+     +  AL K+ +   ++ + + K+
Sbjct: 347 EEALKEELLARQDEFHDRLQELQLQSKRSREDLNSCKNEVTALEKKLQNKEKEVQALTKE 406

Query: 602 IAQVTAKGEAE--KTAILISILHEVHIQIHQIESQ 634
           + QV  +      +   + S   E   +  Q E +
Sbjct: 407 LDQVKTETNENIRRLTAVTSEFTECKQKFQQQEEE 441


>gi|224050486|ref|XP_002187303.1| PREDICTED: protein tyrosine phosphatase, receptor type, f
           polypeptide (PTPRF), interacting protein (liprin), alpha
           1 [Taeniopygia guttata]
          Length = 1204

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 100/317 (31%), Gaps = 20/317 (6%)

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
             T  +L +L + + +     DG                     G+  +   L++  +  
Sbjct: 197 GTTHKELMILKEQNNQKKTLPDGMLDINHEQENTPTTNGKRASDGSLCHDENLAKMIELQ 256

Query: 361 SFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFN---TPDERAELEIHLKNCINHIK 416
             I    K   +      +L       + + +    +   + +   +L+  ++  +   +
Sbjct: 257 DIIDKQNKEQIQMKERLTALSSRVTELEEDLDTARKDLIKSEEMNTKLQRDVRETLAQKE 316

Query: 417 DQKLRYYYSQA--IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           D + R    +   +  + +      + +        K +   + +    Q   +  L + 
Sbjct: 317 DMEERITTLEKRYLAAQREATSVHDLNDKLENEIATKDSMHRQSEDKNRQLQERLELAEQ 376

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           KL +     E          P +  E  Q +A +         +      + + Q     
Sbjct: 377 KLQQTLRKAETL--------PEVEAELAQRVAALTKAEERHGNI-----EERLRQMEAQL 423

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           EE +Q L      E + +   +     +    +E+N   ++   ++ +A  +    L R+
Sbjct: 424 EEKNQELQRARQREKMNEEHNKRLSETVDKLLSESN-ERLQLHLKERMAALEDKNSLLRE 482

Query: 595 KEEIEKQIAQVTAKGEA 611
            E  +KQI ++  + + 
Sbjct: 483 IENAKKQIEELQHEKDQ 499


>gi|224103867|ref|XP_002313225.1| predicted protein [Populus trichocarpa]
 gi|222849633|gb|EEE87180.1| predicted protein [Populus trichocarpa]
          Length = 288

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 69/216 (31%), Gaps = 16/216 (7%)

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
            T+ S   R     +R                    L  + S +   +   L+++     
Sbjct: 25  RTQPSPTPRNPFIPSRPPSSLNHRPTPPPHPTSPHLLEDRISTQHREIQSLLLDNQRHAA 84

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE------EIHQRLCE-RGFGELLKQ 552
                  ++     +L+ L +       E+   + E      ++   L         L +
Sbjct: 85  THVALKQEVSLSQQDLRHLSTLAADVKAERDNQIREFYQRSLKLDAELRSIDAMSAELVR 144

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           +   V+   +      A + ++     +A    ++  ++  + E ++++I +  +  E E
Sbjct: 145 VRTDVQKLTVQRQDMTAQLKEMNSEIVKAKTETQQVGVIKEEIETVQQEIQRGRSAIEYE 204

Query: 613 KTAILISILHE---------VHIQIHQIESQEAMIE 639
           K     ++  E         +  +I ++ ++ A  E
Sbjct: 205 KKTRAFNLEQEKVLEKNRILLVREIEKLRTELANSE 240


>gi|148270693|ref|YP_001245153.1| chromosome segregation protein SMC [Thermotoga petrophila RKU-1]
 gi|147736237|gb|ABQ47577.1| condensin subunit Smc [Thermotoga petrophila RKU-1]
          Length = 1170

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 81/230 (35%), Gaps = 18/230 (7%)

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
             YS+ +    + L +      +               +   +   ++     + ++   L
Sbjct: 785  EYSEELEKEKRILDELNEKIFTLRAEVGNLLETKDRYEKEMRDTRKTIERIARETEDIKL 844

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF--LFSDFVEQKYFLPEEIHQR 540
            +  +L   + N+   ++E  +E+  ++    E+  ++    L     E+K    +E+  R
Sbjct: 845  QMTSLEEEMENYRKFIREHEREIEHLK---KEMDNVFEAMKLHRSGKEEKMRELQEVENR 901

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-----QQALALYKRFRLLSRQK 595
            + E    E  + L   +    L    T   I ++ + +            ++   + RQ 
Sbjct: 902  MNE--LKEEKEGLRNHLHQIDLALQETRLKIANLLEEFSGNEEDVEELGEEKLEEIYRQI 959

Query: 596  EEIEKQIA-----QVTAKGEAEKTAILISILHEVHIQIHQIE-SQEAMIE 639
            +++E +I       +TA  E EK       + +    + + +   E +IE
Sbjct: 960  KDLENKIKYLGPVDLTAIDEYEKLREEYEEILKQKEDLEEAKRKLEEIIE 1009



 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 81/234 (34%), Gaps = 17/234 (7%)

Query: 418 QKLRYYYSQAIRDRLQQL--FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK-- 473
           ++      + I +   +L   +             ++      +K  S + + S +++  
Sbjct: 675 EQEMEETERQIAENRDELASLKTEQENLRNQETIVQRELFELSRKSSSTKTVLSEILRTI 734

Query: 474 GKLSKKPSLREAALLLTLINHPAI---LQEQYQELADIRYDNNELQK-LWSFLFSDFVEQ 529
            +L ++    E  L+        +    ++ ++E+ +++ +  +LQ+ L  +      E+
Sbjct: 735 NQLQEEVENLEKLLVEYRAKEEGLNARREKIFEEIDELKQNREDLQRSLAEYSEELEKEK 794

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +                G LL+  DR  ++      T E    +      Q  +L +   
Sbjct: 795 RILDELNEKIFTLRAEVGNLLETKDRYEKEMRDTRKTIERIARETEDIKLQMTSLEEEME 854

Query: 590 LLSRQKEEIEKQIAQVTAKGE---------AEKTAILISILHEVHIQIHQIESQ 634
              +   E E++I  +  + +                +  L EV  ++++++ +
Sbjct: 855 NYRKFIREHEREIEHLKKEMDNVFEAMKLHRSGKEEKMRELQEVENRMNELKEE 908


>gi|138896257|ref|YP_001126710.1| recombination and DNA strand exchange inhibitor protein
           [Geobacillus thermodenitrificans NG80-2]
 gi|189030428|sp|A4IRL1|MUTS2_GEOTN RecName: Full=MutS2 protein
 gi|134267770|gb|ABO67965.1| DNA mismatch repair protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 784

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 50/158 (31%), Gaps = 23/158 (14%)

Query: 493 NHPAILQEQYQEL----ADIRYDNNELQKLWSFLFSDFVEQKYFLPE---EIHQRLCERG 545
           ++P +    Y       A + +D   L+  +  L         F       + +R+ ER 
Sbjct: 449 HYPELKAYGYNRPGVVNASVEFDTETLRPTYKLLIGIPGRSNAFDISRRLGLDERIIERA 508

Query: 546 ----------FGELLKQLDRQVRDAGLWSATTEANIVDV---RQGYQQALALYKRFRLLS 592
                        ++  L+R  + A    A   +   +    R  ++Q L   +  +   
Sbjct: 509 KVQVSAESHSVENMIASLERSKKQAEEDEARAHSAREEAERLRAEWEQKLEELEDKKA-- 566

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            Q  E  ++   +    E E    +I+ L  +  +   
Sbjct: 567 EQLAEAAQKATDIIRAAERE-AERIINELRRLQKEKQA 603


>gi|17136290|ref|NP_476616.1| lamin [Drosophila melanogaster]
 gi|78099783|sp|P08928|LAM0_DROME RecName: Full=Lamin Dm0; Flags: Precursor
 gi|7296991|gb|AAF52262.1| lamin [Drosophila melanogaster]
 gi|25012297|gb|AAN71261.1| LD38055p [Drosophila melanogaster]
          Length = 622

 Score = 40.6 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 77/226 (34%), Gaps = 27/226 (11%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + + L +  ++       +    K   +    +   +  +QS   +     +   +E
Sbjct: 178 RKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQE 237

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWS---FLFSDFVEQKYFLPEEIHQRL 541
                  IN    +++      D R  +    KL      L + + EQ     +EI    
Sbjct: 238 -------INESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLY 290

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-------Q 594
            ++        + R    A   S +T  +I ++R    +  AL      L +       +
Sbjct: 291 EDK--------IQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNAR 342

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIESQEAMIE 639
             ++E+Q+     +   E   +L   L  +  ++  Q++  + +++
Sbjct: 343 IRDLERQLDNDRERHGQE-IDLLEKELIRLREEMTQQLKEYQDLMD 387


>gi|321476145|gb|EFX87106.1| myosin heavy chain isoform 3 [Daphnia pulex]
          Length = 1947

 Score = 40.6 bits (93), Expect = 0.73,   Method: Composition-based stats.
 Identities = 27/263 (10%), Positives = 80/263 (30%), Gaps = 12/263 (4%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  ++    +     K +       + +   + +L       
Sbjct: 1573 DRRIQEKEEEFENTRKNHQRAIDSMQASLEAEAKGKAEALRMKKKLESDINELEIALDHA 1632

Query: 443  HSGYGRYWKKNARHRDQKGPSQR-LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++     +Q  L +    +  L ++  + E           A+  E 
Sbjct: 1633 NKANAEAQKSIKRYQQSIKETQSALEEEQRNRDDLREQYGIAER-------RANALQGEL 1685

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQV 557
             +    +   +   ++  + L     +      +        R  E     L   LD  +
Sbjct: 1686 EESRTLLEQADRARRQAETELADAHEQLHDLTAQAASSSAAKRKMESELQTLHADLDDMI 1745

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +        +  +VD  +   +  A  +  +   +Q++ +E Q+ ++  + +  +   L
Sbjct: 1746 NETKNSEEKAKKAMVDAARLADELRAEQEHAQAQEKQRKALELQVKELQVRLDESENNAL 1805

Query: 618  ISILHEVHIQIHQIESQEAMIEG 640
                  +     ++   E  ++G
Sbjct: 1806 KGGKKAIQKLEERVRGLETELDG 1828


>gi|301116828|ref|XP_002906142.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262107491|gb|EEY65543.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 1068

 Score = 40.6 bits (93), Expect = 0.73,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 53/120 (44%), Gaps = 9/120 (7%)

Query: 529 QKYFLPEEIHQRLCERG--FGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALY 585
           +K    + +  +L E      EL ++++  Q++ A +     E  +  + +  ++ALA  
Sbjct: 805 EKDTESKHLRDKLQEEERKARELQQRVEEMQLQTARMERQKQEEALKSMEKSRREALAKE 864

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH------EVHIQIHQIESQEAMIE 639
           +    L ++ EE++++ A+V  +    +  +  S         E+  Q+ +++   A  E
Sbjct: 865 QEAARLKQELEEMKRKAAEVETQKRQLEVQVTTSEAKKRGEAEELKRQLEEMKYTIAQKE 924


>gi|259503635|ref|ZP_05746537.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259168409|gb|EEW52904.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 822

 Score = 40.6 bits (93), Expect = 0.73,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 86/284 (30%), Gaps = 18/284 (6%)

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G++     R     A+   ++           R T            +        +  +
Sbjct: 55  GKNRFQQYRPRTTAAYGGSLLVEAGGQQYRISRTTGQAGGKVTVTDQQGREFGPEKLTAL 114

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                +  Y       ++Q     + E S                G  +RL+   +  G 
Sbjct: 115 LGNVDQDLYQAVFG--IRQADLAAVDELSRADIQRYLQQVGAVDSGKWRRLVADLIKAGD 172

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              KP  R+  L   L  +  + Q      A       + Q+L +        Q+     
Sbjct: 173 QVFKPRGRKPVLNQHLSEYQELQQRIQAARAKYA----DYQRLRA---DQRTAQEQVDSG 225

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRLLSR 593
           + + +  E+     L++L R       W    +   V     +    A  L  +   L R
Sbjct: 226 QANLK-REQEKAAGLERLVRLWPVFEQWKRGRQTAAVQPISDEQVAAANRLGVQEEELRR 284

Query: 594 QKEEIEKQIAQVT---AKGEAEKTAIL---ISILHEVHIQIHQI 631
           Q ++ E+Q+AQ+    A+ +  +       ++   ++  Q+ Q+
Sbjct: 285 QVKQHEEQLAQLNGRLAQFDQARLRADHARLAEYQDLRAQLLQL 328


>gi|218440494|ref|YP_002378823.1| hypothetical protein PCC7424_3565 [Cyanothece sp. PCC 7424]
 gi|218173222|gb|ACK71955.1| protein of unknown function DUF323 [Cyanothece sp. PCC 7424]
          Length = 925

 Score = 40.6 bits (93), Expect = 0.73,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 92/273 (33%), Gaps = 10/273 (3%)

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
           + AF++ + +  P  +       E R         ++E      +  IK +       Q 
Sbjct: 304 RQAFQREVNKRYPFDESTQNLLQEYRQDVLGLRDEDIESIETEILAPIKVRLEEEVQRQK 363

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             + L++  ++   +        K++     QK       + + ++ +  ++ + R+A L
Sbjct: 364 QAE-LEKQRREEEQQRQKQVELEKQHQEEEIQKQRQAEAKRQAKLERQRREEEAQRQAEL 422

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
                      +E+ Q  A++     E +            ++    +   +   +    
Sbjct: 423 ------DRQRREEEAQRQAELDRQRREEEAQRQAELDRQRREEEIQKQRQAEAKRQAKLE 476

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
              ++ + Q +         E           ++   + K+ +  ++++ ++E+Q  +  
Sbjct: 477 RQRREEEAQRQAELDRQRREEEAQRQAELDRQRREEEIQKQRQAEAKRQAKLERQRREEE 536

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           A+ +AE          E+  Q      ++A +E
Sbjct: 537 AQRQAELDRQRREE--EIQKQRQAEAKRQAKLE 567


>gi|254481853|ref|ZP_05095096.1| hypothetical protein GPB2148_1544 [marine gamma proteobacterium
           HTCC2148]
 gi|214037982|gb|EEB78646.1| hypothetical protein GPB2148_1544 [marine gamma proteobacterium
           HTCC2148]
          Length = 398

 Score = 40.6 bits (93), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/103 (12%), Positives = 38/103 (36%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E      E+ H++L +       +  +    +              +    ++ LAL K 
Sbjct: 55  EDAQAEREKAHKKLTKEKARAADQAREEAAEELSDLKQQLGEKDEKLEDFRKEELALRKA 114

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            ++L ++K ++E  + +   + ++   A L +       ++ +
Sbjct: 115 KQVLDQEKRDLELTLQRQLEEQQSALRAELGNEFQLREAELRK 157


>gi|209878474|ref|XP_002140678.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209556284|gb|EEA06329.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
          Length = 799

 Score = 40.6 bits (93), Expect = 0.73,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 95/282 (33%), Gaps = 28/282 (9%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK---NCINHIKDQKLRY 422
           Y  T  +K +       + +  +E +  +      + + E   +        IK ++   
Sbjct: 514 YRMTDIDKALETQKREYEAIISKENKKYNKLLHAYKLQTEKLTEIEEKLSQKIKSEEELI 573

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            ++  +++R    F+ +I                   K   ++  + ++   +L +    
Sbjct: 574 KWNNELQERFG-SFENHIRRLLDARDNEIIQLNDYMDKQLKKKDEEVNIKIQELCRVQQN 632

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           RE  L+  +++     ++Q  +L        E+ ++         + +         +L 
Sbjct: 633 REKKLINQILDQHDGFEKQRIQLEY------EIHEIKDIYTKKLDDAR---------KLE 677

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ- 601
                 L++ L  +  +  +             +  ++   + +R + L  +K    ++ 
Sbjct: 678 SEKQTRLVESLANKEHEILVKEHLIHEIDSKKSEIEKELCNVKQRLQELQDEKNATVEKL 737

Query: 602 --------IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                   I + T + + +    L + L E+  +++ +E QE
Sbjct: 738 LALQEWGIIIESTHEMDPQLQLSLNTRLEELRQKVNHLEQQE 779


>gi|149052999|gb|EDM04816.1| myosin, heavy polypeptide 10, non-muscle, isoform CRA_b [Rattus
            norvegicus]
          Length = 1976

 Score = 40.6 bits (93), Expect = 0.73,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 101/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 876  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 935

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 936  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEVLLLEDQNS 995

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 996  KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1049

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  QV +  +     E    +++    +        
Sbjct: 1050 RQELEKAKRKLDGETTDLQDQIAELQAQVDELKVQLTKKE---EELQGALARGDDETLHK 1106

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1107 NNALKVARELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1154



 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 83/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L   ++     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1391 EEAKKKLLKDVEALSQRLEEKVLAYDKLEKTKNRLQQELDDLTVDLDHQRQIVSNLEKKQ 1450

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1451 KKFDQLLAEEKGISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1505

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1506 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1565

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1566 EVNMQAMKAQFERDLQTRDEQNEEKKRLLLKQVRELEAELEDERKQRALAVASKKKMEID 1625

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1626 LKDLEAQIEA 1635


>gi|154341377|ref|XP_001566640.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063965|emb|CAM40155.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 761

 Score = 40.6 bits (93), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 14/135 (10%)

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV--------DVRQGY 578
             +       + Q L +    +  K+L +++         T  +I         D+    
Sbjct: 560 KNEPRVDEAAMLQLLADEKVEQTRKKLKQEISKTIREEEKTRKDITQRATKAYHDLCDRL 619

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-----ES 633
           +Q     ++      +KEE E+Q      K   E+ A L S L  +  +  ++     ++
Sbjct: 620 RQETKRTQKEVADRERKEEQERQRELDKIKYAQEQAAELKSRLQSLKKENAELAQSKQDT 679

Query: 634 QEAMIEGFGKMSGRL 648
            +A  E     S R+
Sbjct: 680 TQAAKEAKMA-SERI 693


>gi|94263583|ref|ZP_01287393.1| tRNA synthetase, class II (G, H, P and S):Seryl-tRNA synthetase,
           class IIa [delta proteobacterium MLMS-1]
 gi|93456003|gb|EAT06154.1| tRNA synthetase, class II (G, H, P and S):Seryl-tRNA synthetase,
           class IIa [delta proteobacterium MLMS-1]
          Length = 427

 Score = 40.6 bits (93), Expect = 0.73,   Method: Composition-based stats.
 Identities = 9/92 (9%), Positives = 37/92 (40%)

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            +++    VR+           +    +  ++   L          ++++ ++I  +  +
Sbjct: 6   FIRENFALVREKTARRNLDTTALDQFPELDRRRRELLTELEEGRNHRKKVSQEIGALKKE 65

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           G+    +  +    ++  ++ ++E Q A+++G
Sbjct: 66  GDEAAASRRMEETRQLGERLKELEEQLAVVDG 97


>gi|33598964|ref|NP_780469.1| myosin-10 [Mus musculus]
 gi|71152969|sp|Q61879|MYH10_MOUSE RecName: Full=Myosin-10; AltName: Full=Cellular myosin heavy chain,
            type B; AltName: Full=Myosin heavy chain 10; AltName:
            Full=Myosin heavy chain, non-muscle IIb; AltName:
            Full=Non-muscle myosin heavy chain B; Short=NMMHC-B;
            AltName: Full=Non-muscle myosin heavy chain IIb;
            Short=NMMHC II-b; Short=NMMHC-IIB
 gi|56205560|emb|CAI25528.1| myosin, heavy polypeptide 10, non-muscle [Mus musculus]
 gi|56206614|emb|CAI25576.1| myosin, heavy polypeptide 10, non-muscle [Mus musculus]
 gi|57242967|gb|AAH89011.1| Myosin, heavy polypeptide 10, non-muscle [Mus musculus]
          Length = 1976

 Score = 40.6 bits (93), Expect = 0.73,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 101/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 876  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 935

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 936  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEVLLLEDQNS 995

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 996  KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 1049

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  QV +  +     E    +++    +        
Sbjct: 1050 RQELEKAKRKLDGETTDLQDQIAELQAQVDELKVQLTKKE---EELQGALARGDDETLHK 1106

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 1107 NNALKVARELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1154



 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 83/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L   ++     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1391 EEAKKKLLKDVEALSQRLEEKVLAYDKLEKTKNRLQQELDDLTVDLDHQRQIVSNLEKKQ 1450

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1451 KKFDQLLAEEKGISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1505

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1506 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1565

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1566 EVNMQAMKAQFERDLQTRDEQNEEKKRLLLKQVRELEAELEDERKQRALAVASKKKMEID 1625

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1626 LKDLEAQIEA 1635


>gi|149209271|ref|XP_001522010.1| hypothetical protein MGCH7_ch7g128 [Magnaporthe oryzae 70-15]
 gi|86196083|gb|EAQ70721.1| hypothetical protein MGCH7_ch7g128 [Magnaporthe oryzae 70-15]
          Length = 1286

 Score = 40.6 bits (93), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/189 (10%), Positives = 60/189 (31%), Gaps = 10/189 (5%)

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH--PAILQEQYQELADI 508
           +K      +       ++S L   +   +   +E + L  ++    P +   + +     
Sbjct: 799 QKRHEELQKASEETAGLKSELGASQQLAQSRFKEISELKEILQRAQPELKNLRAEAAKIP 858

Query: 509 RYDNNELQKLWSFL-FSDFVEQKYFLPEEIHQRL--CERGFGELLKQLDRQVRDAGLWSA 565
                   K    +      +        + Q +   +     L  +L  + +       
Sbjct: 859 TLKEQIAAKASDMIALETREKNIKSELSRMKQDVAARDAELKTLRDKLAAENKQRLQLEN 918

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
                  D+R+   + + L  +    +R+  +I+ ++A+V       +   L + L ++ 
Sbjct: 919 DKRTAGRDLRRSEAEKIELSAKEEKATRELHKIQDEMAKVQP-----RIKELEAELQKLK 973

Query: 626 IQIHQIESQ 634
            +   ++ +
Sbjct: 974 KERDDVKEE 982


>gi|332212295|ref|XP_003255255.1| PREDICTED: kinesin-like protein KIF20B isoform 2 [Nomascus
            leucogenys]
          Length = 1822

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 54/140 (38%), Gaps = 8/140 (5%)

Query: 500  EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQV 557
            +  +E+  +  +  +++ L   L  +  E      E++ + L         L   L R+ 
Sbjct: 1226 KLKEEITQLTNNLQDMKHLLQ-LKEEEKETNRQETEKLKEELSASSACTQNLKADLQRKE 1284

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             D              + Q  ++   +    +LL  +  E+EK+  Q + + + ++    
Sbjct: 1285 EDYDDLKEKLNDAKKQIEQVQKEVSVMRNEEKLLRIKINELEKKKNQCSQELDMKQ---- 1340

Query: 618  ISILHEVHIQIHQIESQEAM 637
               + ++  Q++  + +EA+
Sbjct: 1341 -RTIQQLKEQLNNQKVEEAI 1359


>gi|296193753|ref|XP_002744651.1| PREDICTED: kinesin-like protein KIF3A-like [Callithrix jacchus]
          Length = 726

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 28/313 (8%), Positives = 87/313 (27%), Gaps = 16/313 (5%)

Query: 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
           + + ++C +              L   +     +    +    +D             +K
Sbjct: 313 NSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEELKK 372

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + E   +         E+            +   +   +            +   D+  
Sbjct: 373 KLEEGEEISGSDISGSEEDDDEEGEVGEDGEKRKKRKGSSSSSSSDSTCSVIEKPLDKF- 431

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
              Q    + S       +     ++K    +L      + K   +   RE  LL     
Sbjct: 432 LPNQAGKKKVSPDKMIEMQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQE 491

Query: 494 HPAILQEQYQELADIRYDNNELQKLW----SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           H ++L    ++L+ +       +K+       L     ++K      +      +   +L
Sbjct: 492 HQSLL----EKLSALE------KKVIVGGVDLLAKAEEQEKLLEESNMELEERRKRAEQL 541

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            ++L+ + ++         +   + +   ++   ++        +  +++++  +   +G
Sbjct: 542 RRELEEKEQERLDIEEKYTSLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQEHQR-EIEG 600

Query: 610 EAEKTAILISILH 622
             E    L   L 
Sbjct: 601 LLENIRQLSRELR 613


>gi|296090514|emb|CBI40845.3| unnamed protein product [Vitis vinifera]
          Length = 979

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 11/123 (8%)

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERG---------FGELLKQLDRQVRDAGLWSATTEANI 571
            L +    Q      ++ +RL  R            +L  +L  QV+++   S   +  I
Sbjct: 717 ELKTSLHGQSEKQISQLSERLKGREEVCSSLQHKVKDLESKLKEQVKESESHSFILQQKI 776

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            ++ +  +      +    L ++  E+E+++ +     E      L   + E+  ++ + 
Sbjct: 777 KELDRKLKDQEQSSEAASSLQQKVNELERKLREQEESSEVAALLHL--KIKELEEKLREQ 834

Query: 632 ESQ 634
           E Q
Sbjct: 835 EQQ 837


>gi|224063323|ref|XP_002301096.1| predicted protein [Populus trichocarpa]
 gi|222842822|gb|EEE80369.1| predicted protein [Populus trichocarpa]
          Length = 1290

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 83/270 (30%), Gaps = 8/270 (2%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY-YSQAI 428
             ++ + E     + L +R  E +                   + I     + Y   +  
Sbjct: 420 ELKRELHERQLTCEHLNQRAVEAQVEKDKLIMQIESARNGKSWDEIDSSTSQDYDLVKKY 479

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             ++Q+L  + +   +       +   + +          + L         S  +AA +
Sbjct: 480 VSKIQELEGELLHLKNLSNSKCIQFVDYINSDDERFGSKNALLQSLNEFSSNSDTKAADI 539

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC------ 542
              +       E       + ++  EL +      ++           + Q         
Sbjct: 540 SDEVEDDEKELEHSSLQEKLDWELKELDRKLEQKEAEMKRFTSVDTSVLKQHYEKKVHDL 599

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           E+    L K++     +    S+T++     ++  Y Q L + +      ++K++ + Q+
Sbjct: 600 EQEKKVLQKEIGELRCNLVNISSTSDDGAKKLKDEYLQKLTVLEAQVAELKKKQDAQAQL 659

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +   K + E    L   +  +  Q  Q++
Sbjct: 660 LRQKQKSD-EAARRLHEEIQRIKTQKVQLQ 688


>gi|189501925|ref|YP_001957642.1| hypothetical protein Aasi_0509 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497366|gb|ACE05913.1| hypothetical protein Aasi_0509 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 580

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 73/215 (33%), Gaps = 8/215 (3%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           +   L Q   +       +    +K A  +      Q  ++      KL K+   +EA +
Sbjct: 345 LLAELAQEKAQREAFEQMHFEKLQKEAEIQRINAIKQEELRRQQELIKLEKERKEQEAIM 404

Query: 488 LLTL---INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           L      +     ++   +++     D  E Q+L       + +++    E+    L E 
Sbjct: 405 LAAQQEEMQSREAMRLLAEKMKKREEDRKEEQRLLE---EAYKKEQEVQEEQQRLELEEL 461

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                 ++ +    +        E    +          L  + + L ++ E +E+++ Q
Sbjct: 462 FMKVAHEREEAHKHEKAHEQEEAERIKQEEIASGLVKEKLTAQIQALEQELEAVEQKLKQ 521

Query: 605 VTAKGEAEKTAI--LISILHEVHIQIHQIESQEAM 637
              K   E       I+   E+  ++ ++ + EAM
Sbjct: 522 QEHKNATELLDQRADIAERKEILQELEELMAAEAM 556


>gi|123455572|ref|XP_001315529.1| DNA-directed RNA polymerase, omega subunit family protein
            [Trichomonas vaginalis G3]
 gi|121898208|gb|EAY03306.1| DNA-directed RNA polymerase, omega subunit family protein
            [Trichomonas vaginalis G3]
          Length = 5185

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 99/297 (33%), Gaps = 22/297 (7%)

Query: 358  DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
            D +  I    K   E          ++  K+   N    + D  +E+   LK+  N I D
Sbjct: 2251 DLNQKIEDQQKKNAEIDEKNKQLEEELEKKQNELNEMPQSEDMSSEIARKLKDLDNQIAD 2310

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR-HRDQKGPSQRLMQSSLVKGKL 476
            ++ +    +A+  +L    +K   E         K     ++ +    ++ +      ++
Sbjct: 2311 KQRKNSDVEAMNQKLNNDLEKKQKELENIPETEDKTESIQKEIEDVLAQIAEKDKKNDEI 2370

Query: 477  SKKPSLREAALLL---TLINHPAI----------LQEQYQELADIRYDNNE----LQKLW 519
             +K    E  L      LI +P            +++   ++A     N E     +KL 
Sbjct: 2371 DEKNKQLEDELQKKKNELITYPESEDKSSEVARQMKDLENKIAAKDRKNQETEAKNKKLA 2430

Query: 520  SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR---Q 576
            + L     E +     E      ++   ++L Q+  + +         +    +++    
Sbjct: 2431 NDLEKKQKELENIPESEDKTESIQKEIEDVLAQIAEKDKKNDEIDEKNKQLEDELQKKKD 2490

Query: 577  GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                          + RQ +EI   IA    K   E  A    + +++  + +++ES
Sbjct: 2491 ELNNYDEAEDNTSEIQRQMKEIANAIADKERKNN-EIEAKNKKLANDLEKKQNELES 2546



 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 78/223 (34%), Gaps = 19/223 (8%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             + + L +L  +    +       KKN + +D    +   + S +     S+    +   
Sbjct: 901  ELSEILGKLLSQINDRNKANDEITKKNNKLQDDINKANDQLDSIVPVEDNSEVLQQKLDN 960

Query: 487  LLLTL-----------INHPAILQEQYQ---ELADIRYDNNELQKLWSFLFSDFVEQKYF 532
            +   +            N+  +  E  +   +L D+   +++ ++L   +     + +  
Sbjct: 961  IKSLIDQKNKKNEDTNANNKRLEDEIAEKQKQLNDLPVVDDKSEQLQKQIDETNEKIQDK 1020

Query: 533  LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              +        +   + L+Q + +++        +E     + +  ++     KR     
Sbjct: 1021 NKKNAETDAQNKALEKALQQQEEELKSLPEVEDKSEELSKQIEETAEKVAEKEKRNAETE 1080

Query: 593  RQKEEIEKQIAQVTAKGEA-----EKTAILISILHEVHIQIHQ 630
            ++ +++E+Q+A             +K+  L   + EV  +I +
Sbjct: 1081 QKNKDLEEQLAVKERALGELPVVEDKSEELTKQMQEVQEKIAE 1123



 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 70/224 (31%), Gaps = 2/224 (0%)

Query: 410  NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
                 + D +      +   D  Q L  +         +    N + + +     +   S
Sbjct: 1547 ELRKQLNDLEQARSEIEETPDETQSLESEIAALKEAIEQKKSDNEKIQSKNEDLNKQKSS 1606

Query: 470  SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
               +    +    + + LL  +      + ++  E +    +N +LQ+  + L  +    
Sbjct: 1607 LEDELNEIEDVPDKSSELLGLIEAAKEAISKRNDENSKNSDNNKKLQEELNKLNDELKSI 1666

Query: 530  KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +        +     + Q ++        +   +  +   +Q  +          
Sbjct: 1667 PEVNDDSDKLNKQIQDVKSKIDQKNKDRNSKEQKNEQLQQELEKAKQELESIPETPSNAE 1726

Query: 590  LLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQI 631
             L +Q ++I+KQI + T +     ++ A L S L+     +  I
Sbjct: 1727 ELKQQIDDIKKQIEEKTEQNNKIAQENAQLQSELNSAKTDLDTI 1770



 Score = 37.2 bits (84), Expect = 8.0,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 81/249 (32%), Gaps = 15/249 (6%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
             + ++    ++  +LE  L+   + ++        S  +  +++ +  +   +       
Sbjct: 3507 KDQKNDEINEKNKQLEDELQKKRDELESIPESEDKSSEVARKMKDIESEIADKERTNEET 3566

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
              KN +        Q  + S       +++                 I  +  ++     
Sbjct: 3567 EAKNKKLESDLEQKQNELNSIPETADKTEEIQKAI----------DEINSKISEQDKKND 3616

Query: 510  YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
              N++ ++L   L     E       E +     R   E+   +  + +      A  + 
Sbjct: 3617 EINSKNKQLEDELQKKKGELNSIPETEDNSSDLARKLKEVNSNIADKQKKNDEIEAKNKK 3676

Query: 570  NIVDVRQGYQQALAL---YKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEV 624
               D+ +   +  ++     +   L +Q +E+ KQI     K +   EK   L   L ++
Sbjct: 3677 LANDLEKKQNELNSIPETADKTEDLQKQIDEVRKQIEDKDKKNDETNEKNKQLEDQLRQL 3736

Query: 625  HIQIHQIES 633
             IQ+  ++ 
Sbjct: 3737 QIQLEDMDE 3745


>gi|30353923|gb|AAH51798.1| TAOK2 protein [Homo sapiens]
          Length = 1426

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           +R A+L+   I          ++L+  +    + QK    L S    ++      + + L
Sbjct: 660 IRTASLVSRQIQEHEQDSALREQLSGYKRMRRQHQKQLLALESRLRGEREEHSARLQREL 719

Query: 542 CE--RGFGELLKQLDRQVRDAGLWSATTEANIVD---------VRQGYQQALALYKRFRL 590
                GFG   ++L R+ +  G   A                  ++     L   KR   
Sbjct: 720 EAQRAGFGAEAEKLARRHQAIGEKEARAAQAEERKFQQHILGQQKKELAALLEAQKRTYK 779

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           L  +KE++++++ +  +  + EK       L     Q+ Q +++E
Sbjct: 780 L--RKEQLKEELQENPSTPKREKAE----WLLRQKEQLQQCQAEE 818


>gi|76789234|ref|YP_328320.1| replicative DNA helicase [Chlamydia trachomatis A/HAR-13]
 gi|237804848|ref|YP_002889002.1| replicative DNA helicase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311315|ref|ZP_05353885.1| replicative DNA helicase [Chlamydia trachomatis 6276]
 gi|255317616|ref|ZP_05358862.1| replicative DNA helicase [Chlamydia trachomatis 6276s]
 gi|76167764|gb|AAX50772.1| replicative DNA helicase [Chlamydia trachomatis A/HAR-13]
 gi|231273148|emb|CAX10061.1| replicative DNA helicase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296436030|gb|ADH18204.1| replicative DNA helicase [Chlamydia trachomatis G/9768]
 gi|296436958|gb|ADH19128.1| replicative DNA helicase [Chlamydia trachomatis G/11222]
 gi|296437891|gb|ADH20052.1| replicative DNA helicase [Chlamydia trachomatis G/11074]
 gi|297140391|gb|ADH97149.1| replicative DNA helicase [Chlamydia trachomatis G/9301]
          Length = 472

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 6/142 (4%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           + +  +    +          E  +L  ++     L      L +  +   E + ++  L
Sbjct: 2   ATQTKKPQPTQLLSLPNSKESEMIVLGCMLTSVNHLNLAANLLQEDDFYFLEHRIIFRVL 61

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
              F   +   P      L          QL+     + L + +  A      + Y + +
Sbjct: 62  QDAFKSDRPMDP-----HLTGEELKRR-DQLNIIGGPSYLITLSEFAGTSAYIEEYAEII 115

Query: 583 ALYKRFRLLSRQKEEIEKQIAQ 604
                 R + +  ++IEK+ A+
Sbjct: 116 RSKSILRKMIQAAKDIEKKAAE 137


>gi|15605226|ref|NP_220012.1| replicative DNA helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|3328934|gb|AAC68098.1| Replicative DNA Helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|297748627|gb|ADI51173.1| Replicative DNA helicase [Chlamydia trachomatis D-EC]
 gi|297749507|gb|ADI52185.1| Replicative DNA helicase [Chlamydia trachomatis D-LC]
          Length = 472

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 6/142 (4%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           + +  +    +          E  +L  ++     L      L +  +   E + ++  L
Sbjct: 2   ATQTKKPQPTQLLSLPNSKESEMIVLGCMLTSVNHLNLAANLLQEDDFYFLEHRIIFRVL 61

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
              F   +   P      L          QL+     + L + +  A      + Y + +
Sbjct: 62  QDAFKSDRPMDP-----HLTGEELKRR-DQLNIIGGPSYLITLSEFAGTSAYIEEYAEII 115

Query: 583 ALYKRFRLLSRQKEEIEKQIAQ 604
                 R + +  ++IEK+ A+
Sbjct: 116 RSKSILRKMIQAAKDIEKKAAE 137


>gi|56964827|ref|YP_176558.1| metalloendopeptidase [Bacillus clausii KSM-K16]
 gi|56911070|dbj|BAD65597.1| metalloendopeptidase [Bacillus clausii KSM-K16]
          Length = 457

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
           G LL    +            +      ++  ++A         L  + ++++ ++ ++ 
Sbjct: 16  GALLGSSFQPAFAEPDIKKQLDDVQEQQKENVEKAEKTESDLTKLDSELKDLQAELDELK 75

Query: 607 AKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            + E   +      + L E+   I  +E + A++E
Sbjct: 76  QEEETTQQNLDETEAELAEIEADIESLEEEIAVME 110


>gi|313673099|ref|YP_004051210.1| ATP-dependent chaperone clpb [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939855|gb|ADR19047.1| ATP-dependent chaperone ClpB [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 866

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 48/166 (28%), Gaps = 17/166 (10%)

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           A +    ++H  I      +   I   +    KL   + S   E      ++    +  +
Sbjct: 370 AIVAAAYLSHKYISDRHMPD-KAIDLVDEACAKLRMEIDSMPTELDELERKKRQLEIERQ 428

Query: 545 GFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                  ++ + ++             I+ ++  +Q    +    + +  + E+ +  + 
Sbjct: 429 ALKREQDEVSKVKLEKIEKEINDLSEKIIALKTHWQNEKNIIVEIKKVKEEIEDQKNAML 488

Query: 604 QVTAKGEAE---------------KTAILISILHEVHIQIHQIESQ 634
                G  E               K   L + L E+      ++ +
Sbjct: 489 NAERSGNYELASQIKYGKLVELNRKIEELNNKLKEIQKDKKMLKEE 534


>gi|311268418|ref|XP_003132042.1| PREDICTED: myosin-3 [Sus scrofa]
          Length = 1940

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 87/271 (32%), Gaps = 22/271 (8%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
              +  I   +   D   ++   N        ++ L+  +++    I+           I+
Sbjct: 1568 QVKSEIDRKMAEKDEEIEQLKRNYQRTVETMQSALDAEVRSRNEAIR-----------IK 1616

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             +++    +   + S   R   +  +H        +  Q  L    L  +  L+E   L 
Sbjct: 1617 KKMEGDLNEIEIQLSHANRQAAETLKHLRGVQGQLKDTQLHLDDA-LRGQEDLKEQ--LA 1673

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFG- 547
             +    ++LQ + +EL          +KL    L       +    +       ++    
Sbjct: 1674 IVERRASLLQAEVEELRASLEQTERARKLAEQELLDANERVQLLHTQNTSLIHTKKKLET 1733

Query: 548  ---ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               +L  +++   RDA       +    D     ++          L R K+ +E+ +  
Sbjct: 1734 DLMQLQSEVEDASRDARNAEEKAKKATTDAAMMAEELKKEQDTSAHLERMKKNLEQTVKD 1793

Query: 605  VTAKGEAEKTAIL---ISILHEVHIQIHQIE 632
            +  + +  +   L      + ++  +I ++E
Sbjct: 1794 LQHRLDEAEQLALKGGKKQIQKLEARIRELE 1824


>gi|310114346|ref|XP_003119933.1| PREDICTED: rootletin-like [Homo sapiens]
          Length = 824

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 58/177 (32%), Gaps = 10/177 (5%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
            + +      +     +  +LRE +L         + +E  +  A +      L  L   
Sbjct: 179 KALQAQFEDAITAHQRETTALRE-SLRDLAAERGDVEREAERLRAQLTVAQEGLAALRQE 237

Query: 522 L--FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN--IVDVRQG 577
           L    +  E  +   +E  + L +    + +  L      A +  A  E         + 
Sbjct: 238 LQGVEESREGLHREAQEARRALSDEAREKDVLLLFNSELRATICRAEQEKASFKRSKEEK 297

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            Q+ L L +    L ++   +   + ++       +       L E+H Q+  ++++
Sbjct: 298 EQKLLILEEAQAALQQEASALRAHLWELEQARGDAR-----QELRELHRQVRTLKAE 349


>gi|307169992|gb|EFN62471.1| Bullous pemphigoid antigen 1, isoforms 6/9/10 [Camponotus floridanus]
          Length = 8605

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 52/419 (12%), Positives = 120/419 (28%), Gaps = 36/419 (8%)

Query: 250  NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309
                 L  L++     + R S   I L     +      A    V            L+ 
Sbjct: 7379 GLNHNLRTLKQKWDNVLARASDKKIKLEIALKEATEFHDALQAFVDWLTNAEKILTNLKP 7438

Query: 310  LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
            + ++   I+   +      +      + +L     G  + +    +       +    + 
Sbjct: 7439 VSRVMETILQQIEEHKAFQKDVGVHRETMLNLDKKGTHLKYFSQKQDVILIRNLLVSVQH 7498

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDER-AELEIHLKNCINHIKDQKLRYYYSQAI 428
             +E+++ +S      L     E R F+             +  ++ +    L       I
Sbjct: 7499 RWERVVSKSAERTRALDHGYKEAREFHDSWSNLMYWLDETEKTLDEVAADGLGGNDPDKI 7558

Query: 429  RDRLQQ--LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL---- 482
            + RL +    QK ++          KN +    K P         +  +L  K +     
Sbjct: 7559 KSRLNKHREIQKALSAKQSTYDTTMKNGKTLKDKAPKTDEPALRELLNELKNKWTTVCGK 7618

Query: 483  ---REAALLLTLI---NHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYF 532
               R+  L   L+        +Q   + L+     +         L   + +   + K F
Sbjct: 7619 CVDRQRKLEEALLFSGQFKDAIQALLEWLSKTEKYLASTGPLHGDL-DTVTNLMEQHKTF 7677

Query: 533  LPE----------------EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
              +                E+  +        +  QL          ++ +    + + +
Sbjct: 7678 ERDLESRASQMESVIKTGRELESKASIEDASMIRSQLSELNSLWDRVTSLSSKKSLQLEE 7737

Query: 577  GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
              ++A  L+K   +L     + E ++       E E      + L E    + +++S+E
Sbjct: 7738 ALREAERLHKAVHVLLEWLSDAEMKLRFAGPLPEDE--QESRNQLMEHQRFLRELQSKE 7794



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/289 (10%), Positives = 85/289 (29%), Gaps = 30/289 (10%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL-EIHLKNCINHIK 416
           D  +      +   +++   +    +    R  +    +TP+   +    ++ +  +   
Sbjct: 189 DWRTARSSQPRERLDRVFYVAE--REYGVTRLLDPEDVDTPEPDEKSLITYISSLYDVFP 246

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG---PSQRLMQSSLVK 473
           +    +    A   R    +++  +    + R      + R         ++L   S   
Sbjct: 247 EPPAIHPLYDAEAQRRSAEYRELASSLHMWIREKMALMQERSFPPTLIEMKKLAADSTKF 306

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                 P  R+   L  +      LQ+ ++ + ++  +      +    ++  +      
Sbjct: 307 KNEEVPPRYRDKQRLTYIFRD---LQKYFEAVGEVDMEPELHIDVIDKNWNRLMMLHQER 363

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR---- 589
            + I   +        L++L R          TT+  + ++ +  +       R      
Sbjct: 364 EQSIIDEIKR------LERLQRLAEKVHREMKTTDNRLEELERRVEDEARKLDRLHPLEA 417

Query: 590 -----LLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQ 627
                LL +     E QI           +G   +   L   + ++H +
Sbjct: 418 KHAVDLLEQDIRSTETQIQNIFTDVHTLTEGRYSQAPELHKRVQKLHQR 466


>gi|284163349|ref|YP_003401628.1| hypothetical protein Htur_0054 [Haloterrigena turkmenica DSM 5511]
 gi|284013004|gb|ADB58955.1| Protein of unknown function DUF460 [Haloterrigena turkmenica DSM
           5511]
          Length = 658

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/217 (8%), Positives = 57/217 (26%), Gaps = 20/217 (9%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           +             + R +       D   P       +  +   +       AA L  +
Sbjct: 295 VAADVTPMPETVEKFRRSFDAAGWVPDSDLPVDEKQHRTRDEPYDNDHQRDAMAAALYAV 354

Query: 492 INHPAILQEQYQELAD-IRYDNNELQKLW-----SFLFSDFVEQKYFLPEEIHQR----L 541
             H         +L   I       + +        +  D  + +    E+        L
Sbjct: 355 DAHEDQFDRIAGKLPPGIDRGEVTARVVAGEESVEAVLRDLTDDESGEEEDSTTHEPREL 414

Query: 542 CERG-----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            E           +++L   V          +  I ++           +      R+  
Sbjct: 415 TEEEKRIKSLERQVERLQSHVETLEGRVEERDERIEELESELTLKRREERTQVRKDREVS 474

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +E++  ++  + +  +       + E+  ++ ++++
Sbjct: 475 RLERKANRLERERDEAR-----EAVDELERKVERMKA 506


>gi|260892645|ref|YP_003238742.1| ParB domain protein nuclease [Ammonifex degensii KC4]
 gi|260864786|gb|ACX51892.1| ParB domain protein nuclease [Ammonifex degensii KC4]
          Length = 483

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 61/173 (35%), Gaps = 11/173 (6%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPA-----ILQEQYQELADIRYDNNELQKL 518
             L      + +   +   RE   L   +         +  E  +   ++ +   + +K+
Sbjct: 206 SDLSVKQAQELRKELEAERREKEALSRRLAELEEEKKYLSAELTRLSGELTFREEQGRKV 265

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV-RDAGLWSATTEANIVDVRQG 577
                   +E+K      + ++L E     + + +++ V R      A  EA      + 
Sbjct: 266 EE--LRALLEEKERELAGLRRKLRELQERPVERVVEKVVYRTDPALEAELEAAREQAAKL 323

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL-HEVHIQIH 629
            ++     +RFR L+R+KE  E ++  +  +   E+       +  E+  +  
Sbjct: 324 LEEKEFYEQRFRDLAREKERKEAKLRSLEQEL--ERLERRYEHVCRELKREKE 374


>gi|255348874|ref|ZP_05380881.1| replicative DNA helicase [Chlamydia trachomatis 70]
 gi|255503414|ref|ZP_05381804.1| replicative DNA helicase [Chlamydia trachomatis 70s]
 gi|255507092|ref|ZP_05382731.1| replicative DNA helicase [Chlamydia trachomatis D(s)2923]
 gi|289525542|emb|CBJ15020.1| replicative DNA helicase [Chlamydia trachomatis Sweden2]
 gi|296435102|gb|ADH17280.1| replicative DNA helicase [Chlamydia trachomatis E/150]
 gi|296438822|gb|ADH20975.1| replicative DNA helicase [Chlamydia trachomatis E/11023]
          Length = 472

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 6/142 (4%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           + +  +    +          E  +L  ++     L      L +  +   E + ++  L
Sbjct: 2   ATQTKKPQPTQLLSLPNSKESEMIVLGCMLTSVNHLNLAANLLQEDDFYFLEHRIIFRVL 61

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
              F   +   P      L          QL+     + L + +  A      + Y + +
Sbjct: 62  QDAFKSDRPMDP-----HLTGEELKRR-DQLNIIGGPSYLITLSEFAGTSAYIEEYAEII 115

Query: 583 ALYKRFRLLSRQKEEIEKQIAQ 604
                 R + +  ++IEK+ A+
Sbjct: 116 RSKSILRKMIQAAKDIEKKAAE 137


>gi|194379162|dbj|BAG58132.1| unnamed protein product [Homo sapiens]
          Length = 1068

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 89/280 (31%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   +    E+    
Sbjct: 496 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKMENGSLK 555

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   +    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 556 SHLQGEKQKATEASAVEQTAES--CEVQEMLKVARAEKDLLE--LSCNELRQELLKANGE 611

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 612 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 671

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + E    
Sbjct: 672 VEQHRAVKLHNNQLISELESSVIK----------LEEQKSDLERQLKTLTKQMKEETEEW 721

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 722 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 761


>gi|75750472|ref|NP_001028725.1| cytospin-B NSP5b3b [Homo sapiens]
 gi|74722683|sp|Q5M775|CYTSB_HUMAN RecName: Full=Cytospin-B; AltName: Full=Nuclear structure protein
           5; Short=NSP5; AltName: Full=Sperm antigen HCMOGT-1;
           AltName: Full=Sperm antigen with calponin homology and
           coiled-coil domains 1
 gi|56699511|tpg|DAA05629.1| TPA_exp: NSP5beta3beta [Homo sapiens]
 gi|119571299|gb|EAW50914.1| spectrin domain with coiled-coils 1, isoform CRA_a [Homo sapiens]
 gi|119571302|gb|EAW50917.1| spectrin domain with coiled-coils 1, isoform CRA_a [Homo sapiens]
          Length = 1068

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 89/280 (31%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   +    E+    
Sbjct: 496 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKMENGSLK 555

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   +    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 556 SHLQGEKQKATEASAVEQTAES--CEVQEMLKVARAEKDLLE--LSCNELRQELLKANGE 611

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 612 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 671

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + E    
Sbjct: 672 VEQHRAVKLHNNQLISELESSVIK----------LEEQKSDLERQLKTLTKQMKEETEEW 721

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 722 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 761


>gi|47224613|emb|CAG03597.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 8348

 Score = 40.6 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 77/238 (32%), Gaps = 28/238 (11%)

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                  I ++ + L++    +          + +    +G     ++ +           
Sbjct: 5430 ETLKNVISEKQKSLYEALERQQHYQESLQSISTKMESIEGTLNESLEPNKSPESQMAAHQ 5489

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW------------SFLFSDFVEQ 529
                 +L+       +     +ELAD   D      L             + +      +
Sbjct: 5490 ALMDEILMLQEEIGELQTWFAEELADSDGDGEAGDHLALQSTLTVLGERMATIQMKASGK 5549

Query: 530  KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
            +  L E+I ++L  +   + L++   +  +   W  +T A +    Q   + L + ++  
Sbjct: 5550 RQLLEEKISEQLEGQRQEQALQRYHSEAEELDHWLLSTRATLSSALQPINEDLDMEEQLI 5609

Query: 590  LLSRQKEEIEKQIA----------------QVTAKGEAEKTAILISILHEVHIQIHQI 631
                   EIE++++                +   KGEAE+    +  L +  +++ Q+
Sbjct: 5610 DCQNMLLEIEQKVSYLSELSVHSESLLLEGRAETKGEAEQLTAKLRSLKDSLVELQQM 5667


>gi|328856248|gb|EGG05370.1| hypothetical protein MELLADRAFT_78111 [Melampsora larici-populina
            98AG31]
          Length = 2103

 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 84/253 (33%), Gaps = 39/253 (15%)

Query: 418  QKLRYYYS--QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            + LR      Q   D L +L +  +   S      +     +D        M+  L+  +
Sbjct: 1373 ETLRDQLGVSQKAHDELVKLSRDQVANMSSEIEGLRGKLGEQDGLEAQLNEMEQGLMAKE 1432

Query: 476  LSKKPSLRE--AALLLT---LINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFV- 527
               +    E    +L T   L+N   I  E  +  +L++I     E + L   L      
Sbjct: 1433 KELEVVKDEVKRVMLETETNLVNRHEIELESLRASQLSEIERLKGEHKDLLERLVEASEV 1492

Query: 528  --EQKYFLPEEIHQRLCERGFGEL----------LKQLDRQVRDAGLWSATTEANIVDVR 575
                K    +++  +   R   EL          L+++ R V          + +  ++ 
Sbjct: 1493 KLRAKEQELKDLESKWETRLKEELELQASAHQTSLEEV-RLVSVREGLEEMKQKHDAELA 1551

Query: 576  QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ----- 630
            +   Q  A   R   L  + E  E  +  + +   +         + E+ +++ Q     
Sbjct: 1552 EIVVQVEAKEVRLSALLTELEAKESGLKAMESDHSS--------KIQELQLKLEQAMSSN 1603

Query: 631  ---IESQEAMIEG 640
               ++S EA IEG
Sbjct: 1604 PDQLKSLEAEIEG 1616


>gi|323352606|ref|ZP_08087576.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis VMC66]
 gi|322121642|gb|EFX93388.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sanguinis VMC66]
          Length = 641

 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    L +
Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 541

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L +   +   +         +    ++  ++   L +R   L  Q E+++ QI+
Sbjct: 542 KAEQEALCE---ETEQSSPDKPAPANDYQLQKENQKEQRRLARRLEQLEAQIEDLDIQIS 598

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
           Q+       +     + L E   QI Q+ +  +EAM+E
Sbjct: 599 QLQEAM---QATNDAAELMESQQQIDQLTAAQEEAMLE 633


>gi|282883403|ref|ZP_06291995.1| replicative DNA helicase [Peptoniphilus lacrimalis 315-B]
 gi|281296759|gb|EFA89263.1| replicative DNA helicase [Peptoniphilus lacrimalis 315-B]
          Length = 453

 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 52/146 (35%), Gaps = 9/146 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++    +  E + L  ++     +    + ++   + +   QK++S + S +   +    
Sbjct: 15  RIPPHNNDAETSALGAMLLSKEAITLSIEIISVEDFYSPAHQKIYSSILSIYNRNEACDV 74

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + + L        L+++   V  A + S+    +           L + K   +L + 
Sbjct: 75  VTLSEELLRTDS---LEEVGGSVYLADISSSVAAVSNSRY------YLNIIKEKSILRKL 125

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISI 620
            +   K I +  +   A  + I ++ 
Sbjct: 126 IDSSSKVITKAYSPEAAASSLIELAE 151


>gi|223039676|ref|ZP_03609962.1| ATP-dependent protease La [Campylobacter rectus RM3267]
 gi|222879059|gb|EEF14154.1| ATP-dependent protease La [Campylobacter rectus RM3267]
          Length = 807

 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 68/219 (31%), Gaps = 26/219 (11%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
              +  + +K           ++  ++ R      Q+ +++ +      +  + +  ALL
Sbjct: 73  AGVIGTVMRKVPLPDGRVKILFQGTSKGRIVSKVGQKPLRAIVDVLHEKRPENTKSDALL 132

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSF------LFSDFVEQKYFLPEEIHQRLC 542
             L       ++     A   +   +L K          +    +       +  ++   
Sbjct: 133 TVL------REKVRDLAALSHFFPPDLLKTIEESAESVRICDLILSSLRLKKKTAYEFFI 186

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           E    + L +L   V    +          +++      +    +   L  Q ++I++++
Sbjct: 187 EENLEQKLLKLIDYV----IEEIEANKLQREIKNKVHSRIDKVNKEYFLKEQLKQIQQEL 242

Query: 603 -AQVTAKGEAEKTAILIS---------ILHEVHIQIHQI 631
            +  + + E E+    +             E+  QI ++
Sbjct: 243 GSDTSREEEIEEYRKKLEVKKKFMGEDAYKEIKKQIDKL 281


>gi|195018507|ref|XP_001984794.1| GH14831 [Drosophila grimshawi]
 gi|193898276|gb|EDV97142.1| GH14831 [Drosophila grimshawi]
          Length = 1062

 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 77/269 (28%), Gaps = 30/269 (11%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLR----YYYSQAIRDRLQQLFQKYITEHS 444
             E+       +       L      IKD + +        + +  ++ +L  +     S
Sbjct: 684 ALEHEKDTLLHQLDNKTERLYKLEYEIKDCREKRDAMEQTIKELESQVGKLTTRTRQRDS 743

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP---SLREAALLLTLINHPA----- 496
                  ++   R Q    +     ++ +          +  EA  L   +         
Sbjct: 744 ELNETSAESKTMRQQIVALKASRDEAIAENGRLTGRLSDAQVEAKTLQKKLKDAEQQVAD 803

Query: 497 -------ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                   +QE  +    +     + ++L     S   +Q                F   
Sbjct: 804 MKQKLHKYVQEVKRAEDLLMQKEKDREELLDHYHSLTHDQVVLEGNNQSLEFEATEFKRQ 863

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT--- 606
           + +L+ +VR         +  I ++     Q  A     R L R+ E   +Q  ++    
Sbjct: 864 ICELECEVRSLKDQILCRQCTIDELE---MQLTAARASMRCLERELENAREQKIELDVRK 920

Query: 607 -----AKGEAEKTAILISILHEVHIQIHQ 630
                   E EK    ++ L+E+  ++ +
Sbjct: 921 ELCDKLDVEKEKLNAELNELNEIRKKLEK 949


>gi|166154712|ref|YP_001654830.1| replicative DNA helicase [Chlamydia trachomatis 434/Bu]
 gi|166155587|ref|YP_001653842.1| replicative DNA helicase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335986|ref|ZP_07224230.1| replicative DNA helicase [Chlamydia trachomatis L2tet1]
 gi|165930700|emb|CAP04197.1| replicative DNA helicase [Chlamydia trachomatis 434/Bu]
 gi|165931575|emb|CAP07151.1| replicative DNA helicase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 472

 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 6/142 (4%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           + +  +    +          E  +L  ++     L      L +  +   E + ++  L
Sbjct: 2   ATQTKKPQPTQLLSLPNSKESEMIVLGCMLTSVNHLNLAANLLQEDDFYFLEHRIIFRVL 61

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
              F   +   P      L          QL+     + L + +  A      + Y + +
Sbjct: 62  QDAFKSDRPMDP-----HLTGEELKRR-DQLNIIGGPSYLITLSEFAGTSAYIEEYAEII 115

Query: 583 ALYKRFRLLSRQKEEIEKQIAQ 604
                 R + +  ++IEK+ A+
Sbjct: 116 RSKSILRKMIQAAKDIEKKAAE 137


>gi|57163757|ref|NP_001009221.1| superfast myosin heavy chain [Felis catus]
 gi|6708502|gb|AAD09454.2| superfast myosin heavy chain [Felis catus]
          Length = 1945

 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 40/123 (32%), Gaps = 3/123 (2%)

Query: 514  ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            EL ++ + +     E++            +R    L   L+ + +         +    D
Sbjct: 1558 ELAQVKADIDRRIHEKEEEFEATRKNH--QRAIESLQASLEAEAKGRAEALRLKKKMETD 1615

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-ILISILHEVHIQIHQIE 632
            + +   Q     K    L +  + +E+QI  +  + + +      +   + +  +   + 
Sbjct: 1616 LNEMEIQLDHANKNNSELVKTLKRLEQQIKDLQMQMDEDARQHEELREQYNLQERRLSLL 1675

Query: 633  SQE 635
              E
Sbjct: 1676 QTE 1678


>gi|116628696|ref|YP_813868.1| replicative DNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238853351|ref|ZP_04643731.1| replicative DNA helicase [Lactobacillus gasseri 202-4]
 gi|282852329|ref|ZP_06261671.1| replicative DNA helicase [Lactobacillus gasseri 224-1]
 gi|311111567|ref|ZP_07712964.1| replicative DNA helicase [Lactobacillus gasseri MV-22]
 gi|116094278|gb|ABJ59430.1| primary replicative DNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238834039|gb|EEQ26296.1| replicative DNA helicase [Lactobacillus gasseri 202-4]
 gi|282556071|gb|EFB61691.1| replicative DNA helicase [Lactobacillus gasseri 224-1]
 gi|311066721|gb|EFQ47061.1| replicative DNA helicase [Lactobacillus gasseri MV-22]
          Length = 457

 Score = 40.6 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 10/144 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +     S  E A+L  +   P  + +    L    +  +  + ++  + +    ++   
Sbjct: 6   SQQIPHDSEAEKAVLGAVFLDPEAIIDASDILQPDDFYEHANRIVFQAMLNISDREEVID 65

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  +   L +            QV D G  +  TE ++      +    A   + + + R
Sbjct: 66  PVTLQDELKKN----------NQVDDIGGIAYVTELSMATPTAAHLTYYAKIVKRKAILR 115

Query: 594 QKEEIEKQIAQVTAKGEAEKTAIL 617
                 ++I Q   +G  + T IL
Sbjct: 116 NLISTSQRIIQNAIEGSDDVTDIL 139


>gi|332251704|ref|XP_003274986.1| PREDICTED: ankycorbin isoform 5 [Nomascus leucogenys]
          Length = 972

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 102/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 586 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 643

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L+
Sbjct: 644 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLK 703

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 704 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 762

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 763 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 822

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 823 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 860


>gi|315052402|ref|XP_003175575.1| dynactin [Arthroderma gypseum CBS 118893]
 gi|311340890|gb|EFR00093.1| dynactin [Arthroderma gypseum CBS 118893]
          Length = 1358

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 72/248 (29%), Gaps = 33/248 (13%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              +R +L+ + +K   +           A     +   Q+L +    + +       + 
Sbjct: 304 LDDLRTKLKIMEKKRTEDREKLKMVEAYRAERDKFETIIQKLREKYQPQQQEITTLRKQL 363

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                 +     +  E    L     D    +++   + +++   K+   E   +    +
Sbjct: 364 KEAEYRVEEVERLQAEHESILEMAALDREMAEEVAESIKAEYEALKFRTEELELEVEVLK 423

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY--------QQALALYKRFRLLSRQKE 596
              + L Q+      +       E     +R+          QQ   L  + + L  + +
Sbjct: 424 EENDQLGQVMSPEEKSSQGWLQMERTNERLREALIRLRDMTQQQEADLKDQVKELEEELK 483

Query: 597 E------------------------IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ-I 631
           +                        +++Q+  + A+   E+         E   ++   I
Sbjct: 484 DYNNLKAQYESTKEKLLESEANMEDLKQQVEALGAEEMIEELTEKNMQYQEEVNELKAII 543

Query: 632 ESQEAMIE 639
           E  E++ E
Sbjct: 544 EDLESLKE 551



 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 71/226 (31%), Gaps = 22/226 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +    RL+ + Q+   +     +  ++  +  +         +  L++ + + +   ++
Sbjct: 453 LREALIRLRDMTQQQEADLKDQVKELEEELKDYNNLKAQYESTKEKLLESEANMEDLKQQ 512

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-E 543
              L          +E  +EL +      E       +  D    K    E     +  E
Sbjct: 513 VEALG--------AEEMIEELTEKNMQYQEEVNELKAIIEDLESLKELNDELEINHIESE 564

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E +   +    +     +  +A I D+     +   L    +          +QI 
Sbjct: 565 KQLQEEIDFREGIYHEQNRKISQQDAVIEDLEYTLSKFRELVSTLQNDLEDMR-ASQQIT 623

Query: 604 QVTAKGEAEKTAILISILHEVHI------------QIHQIESQEAM 637
           +  A     ++  ++ +  ++              ++ ++E++E+ 
Sbjct: 624 ETEATDLTVRSRAMMDLNMKLQASAAKAQVKSMDVELGRMEAEESA 669


>gi|310119144|ref|XP_003118566.1| PREDICTED: rootletin [Homo sapiens]
          Length = 1590

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 59/177 (33%), Gaps = 10/177 (5%)

Query: 462  PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
             + +      +     +  +LRE +L         + +E  +  A +      L  L   
Sbjct: 981  KALQAQFEDAITAHQRETTALRE-SLQDLAAERGDVEREAERLRAQLTVAQEGLAALRQE 1039

Query: 522  L--FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN--IVDVRQG 577
            L    +  E  +   +E  + L +    + +  L      A +  A  E         + 
Sbjct: 1040 LQGVEESREGLHREAQEARRALSDEAREKDVLLLFNSELRATICRAEQEKASFKRSKEEK 1099

Query: 578  YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             Q+ L L +    L ++   +   + ++   G   +       L E+H Q+  ++++
Sbjct: 1100 EQKLLILEEAQAALQQEASALRAHLWELEQAGGDAR-----QELRELHRQVRTLKAE 1151


>gi|302392390|ref|YP_003828210.1| flagellar hook-length control protein [Acetohalobium arabaticum DSM
           5501]
 gi|302204467|gb|ADL13145.1| flagellar hook-length control protein [Acetohalobium arabaticum DSM
           5501]
          Length = 548

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 56/152 (36%), Gaps = 6/152 (3%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           L++ + +  D+  +  ELQKL   L  D  E      +++   +       +   +++  
Sbjct: 92  LKKLFDKDLDLNLNQTELQKLKKLLTEDGFEITEEELKDLLDSIGSIYQELMELDINKLS 151

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ---IAQVTAKGEAEKT 614
             +    +  +    D+    ++     K  + +  ++ E+ +Q     Q   K   +  
Sbjct: 152 SLSEAEQSELKQLKADLLAAIKEFKLQLKNLKEIDAKQLELLQQQSTKEQHQIKATKQFK 211

Query: 615 AILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
             L+  L E+     +++ Q +     G  SG
Sbjct: 212 ENLLQKLAELKKLAGKMQKQRSA---AGLKSG 240


>gi|301608024|ref|XP_002933593.1| PREDICTED: huntingtin-interacting protein 1-like [Xenopus
           (Silurana) tropicalis]
          Length = 1261

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/259 (8%), Positives = 74/259 (28%), Gaps = 9/259 (3%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              +              + P           +   +  ++  +    L++   + K + 
Sbjct: 654 HQSLSENTFDDIFGSSFSNDPFNFSNQNGMRRDDKDHLIEQLYKEIAMLRDEFGNFKSES 713

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R      ++ R+Q+L  +   +     +   +N   R +    +R  + +    +   +
Sbjct: 714 HR--LVTNLKGRIQELEAELAEQKHLREQAVDENEFLRTELEDLKRRREDTEKAQRSLTE 771

Query: 480 PSLR----EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E         +  ++      L        ++      L      +K     
Sbjct: 772 IERKSVANEQRYTKLKEKYAELVHSHADLLRKNAEVTKQVSVAREALVDTERSKKELEDS 831

Query: 536 -EIHQRLCERGFGELLKQLDRQ--VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
            +      +R   E +K++D+     ++           ++  +   Q   +  +  ++ 
Sbjct: 832 YQRVNEHTQRKAHEQIKEMDQLQGALESNKQEIHLLKASIEASKQEGQIRIMELKESVID 891

Query: 593 RQKEEIEKQIAQVTAKGEA 611
           R  +E E  I +   + + 
Sbjct: 892 RVLQEAEFIIQESLRQLDE 910



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/256 (10%), Positives = 63/256 (24%), Gaps = 45/256 (17%)

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
            D   K   +  S    D               +KD   R    Q  +  LQ        
Sbjct: 550 YDYTVKLLFKLHSCLPTDTLQGHRDRFVEQFQKLKDLFYRSSNLQYFKRLLQI------- 602

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL--INHPAILQ 499
                      N             +     +       +L E   L+ +  ++H ++ +
Sbjct: 603 ---PQLPENPPNFLRASALSEHISPVVLIPSENSPPDSETLIETEDLVGMDTLSHQSLSE 659

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
             + ++    + N+                +  +  +    L E+ + E+    D     
Sbjct: 660 NTFDDIFGSSFSNDPFN----------FSNQNGMRRDDKDHLIEQLYKEIAMLRDEFGNF 709

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI- 618
                                    ++    L  + +E+E ++A+     E         
Sbjct: 710 KS---------------------ESHRLVTNLKGRIQELEAELAEQKHLREQAVDENEFL 748

Query: 619 -SILHEVHIQIHQIES 633
            + L ++  +    E 
Sbjct: 749 RTELEDLKRRREDTEK 764


>gi|298251346|ref|ZP_06975149.1| ATP-dependent chaperone ClpB [Ktedonobacter racemifer DSM 44963]
 gi|297545938|gb|EFH79806.1| ATP-dependent chaperone ClpB [Ktedonobacter racemifer DSM 44963]
          Length = 872

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 70/215 (32%), Gaps = 14/215 (6%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++KYI + +   R ++           +  +++    + +      + ++AL+   + 
Sbjct: 317 EEYRKYIEKDAALERRFQPVMVDEPTVEDTISILRGLKQRYETHHGVRITDSALVSAAVL 376

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +    +    L S   E           ++            
Sbjct: 377 SKRYITDRFLPDKAIDLVDEAASRKRVELDSTPTEIDALDRRIRQLQIEHEALK------ 430

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                 +    A  E  I ++++         +R R        I++++ Q   + E  +
Sbjct: 431 KESDPGSQERRAKVEQEIANLQEQLNAMKLALERERGPVETMRNIQQELEQAQIELEKAE 490

Query: 614 TAILISILHEVH--------IQIHQIESQEAMIEG 640
                +   E+          Q+H++E + A I+G
Sbjct: 491 LEYNFARAAELRHGVIPRLEQQLHEMEERLANIKG 525


>gi|296201256|ref|XP_002747957.1| PREDICTED: myosin-8 [Callithrix jacchus]
          Length = 1937

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 28/272 (10%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHIRVVETMQSTLDAEIRSRNDALRVKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1624 DLNEM-EIQLNHANRLAAESLRNYRNSQGILKETQLHLDDALRGQEDLKEQ------LTI 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +E+          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEEVRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  ++ +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 VSQLQSEMEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QLRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828


>gi|313127099|ref|YP_004037369.1| ATPase involved in DNA repair [Halogeometricum borinquense DSM
           11551]
 gi|312293464|gb|ADQ67924.1| ATPase involved in DNA repair [Halogeometricum borinquense DSM
           11551]
          Length = 894

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 97/302 (32%), Gaps = 10/302 (3%)

Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375
            +    DG    +    +     +           V +    D   F+    +   E  +
Sbjct: 71  ELWFTHDGGSYHIHRRLRKSGDRVQTAKCLLEGPDVSVDGARDVRGFVADLLRMDAEAFV 130

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             +  +      +          D   +L    K     ++  K R      + +R   L
Sbjct: 131 NCAY-VRQGEVNKLINATPSQRQDTIDDLLQLGKLEEYRVRAGKARLGVEDVLTERRGAL 189

Query: 436 --FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
              +  I      G + + NA   +      ++ +    + K  +     E  +L T   
Sbjct: 190 SKVESQIEAKEDAGLHERLNALETELGEVDDQIERYEDQREKAVETRENAE-EVLETYRE 248

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
             A L E  +++AD+R      ++    L S+  E +    EEI  R+ ++     L ++
Sbjct: 249 KRAELDELAEDIADLRETIESDERKRETLRSEVGEARD-SVEEIRDRIEKKRAETTLDEV 307

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                 +   +A  +       +       + +R  +LS Q +++ ++  +  ++   ++
Sbjct: 308 -----TSDAIAARRDELDEREAEIRSDLTDVRERRTMLSNQAKKLRERAEEFESRAAEKR 362

Query: 614 TA 615
           + 
Sbjct: 363 SR 364


>gi|195489808|ref|XP_002092894.1| key [Drosophila yakuba]
 gi|194178995|gb|EDW92606.1| key [Drosophila yakuba]
          Length = 444

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 80/251 (31%), Gaps = 20/251 (7%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               + + + A ++       L +   + ET         E  E +I     +  I  QK
Sbjct: 139 HKLTQQWRQEAADREQQYKEQLKECQVQVETLREENQKLKEDLETKIEQIEVVQSI-SQK 197

Query: 420 LRYYYSQAIRDR---LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            +    Q++  +   +  +  +           ++       QK P   +  + + + + 
Sbjct: 198 EQDELRQSVSGKQSLIDNMRVEIDKLQQLKMHSFEFVPEDGSQKEPDPSMALNYVQRDEH 257

Query: 477 SKKPSLREAALLLTLINHPAILQ---EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            ++    +  L   L  +  + +      +E+  ++      Q+L   +  D  E K   
Sbjct: 258 DRQVRDLQRQLSKLLAENLEVTEMKKTYIEEIDCLKVTLASAQELMQKMHRDINELKAKD 317

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            ++           E+++ L  Q            A+         Q L      R L R
Sbjct: 318 IQK----------QEVIEHLQTQNDIYRKDFEMERADREKNAGEKDQYL---LDLRALQR 364

Query: 594 QKEEIEKQIAQ 604
           + +E+ + +A+
Sbjct: 365 RNQELIEALAE 375


>gi|145528714|ref|XP_001450151.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124417751|emb|CAK82754.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1036

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 77/217 (35%), Gaps = 26/217 (11%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            +L++L+++    +     + ++      +       +     + +  K    +E     
Sbjct: 17  RKLERLYEQIAQANESQDHFRQQLEEEIKKTFSLYSEINKLKQEIEDLKAQHQKE----- 71

Query: 490 TLINHPAILQEQYQELADI-----RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            ++    ++Q + +E+  +      + + + + L   L     E +     ++ ++L   
Sbjct: 72  -MLQQQKVIQGKDEEIKKLQDKLQDFQDQD-KDLSDKLKRLMNENEKNT--QLIRQLQSE 127

Query: 545 --GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                + + +L + +      +   +     + Q  +         +LL+ + E+++ ++
Sbjct: 128 KVELEQQILELKKLLSQYEQEAIEFQKEKQQLLQKIEDIQNDKTEVQLLNIEIEKLKVEL 187

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            Q                L EV  QI+ I  ++ ++E
Sbjct: 188 EQ----------KQNYEELKEVANQINTIYQEKHLLE 214


>gi|145485034|ref|XP_001428526.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395612|emb|CAK61128.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1949

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 95/267 (35%), Gaps = 16/267 (5%)

Query: 378  SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
            S     ++      +       +   LE   K     I+  KL+  Y   IR +  QL  
Sbjct: 899  SESRYRVIINDNKVDDYAQKQQDILRLENENKQLNVQIQ--KLQLQYDTEIRRQQTQLSD 956

Query: 438  KY-----ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
                   ++    Y + + ++      +       +S +V+ K        +  ++ T  
Sbjct: 957  LQFENNKLSREVTYSKQYSESVVFNQTEKKQYSSQESEIVQLKNQLADKTHQLKVIQT-- 1014

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
            N    ++E  Q ++ +  +N  + ++ + + S    Q   L E++ ++  ++   ++  +
Sbjct: 1015 NSQNSMEELQQVISKLGLENKNMNEVHNSIKSRLEAQVNKLVEQLREK--DQNINKIQDE 1072

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ-----IAQVTA 607
            L R+ + A             V Q  QQ   L  +   L+ + +E+         ++   
Sbjct: 1073 LRRKEQIAKQQEDDLFIKSNQVEQLIQQNKGLALQLNNLNFELQELRMASLSHSFSKSHI 1132

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQ 634
                 +   L S +  +  QI  +ESQ
Sbjct: 1133 DVRENENQELQSEIQILRNQIQTLESQ 1159


>gi|34098425|sp|Q62172|RBP1_MOUSE RecName: Full=RalA-binding protein 1; Short=RalBP1; AltName:
           Full=Dinitrophenyl S-glutathione ATPase; Short=DNP-SG
           ATPase; AltName: Full=Ral-interacting protein 1
 gi|984749|emb|CAA56912.1| RIP1 [Mus musculus]
 gi|49902626|gb|AAH75732.1| Ralbp1 protein [Mus musculus]
 gi|148706361|gb|EDL38308.1| ralA binding protein 1, isoform CRA_a [Mus musculus]
 gi|148706362|gb|EDL38309.1| ralA binding protein 1, isoform CRA_a [Mus musculus]
 gi|148706363|gb|EDL38310.1| ralA binding protein 1, isoform CRA_a [Mus musculus]
 gi|148706364|gb|EDL38311.1| ralA binding protein 1, isoform CRA_a [Mus musculus]
 gi|148877873|gb|AAI45816.1| Ralbp1 protein [Mus musculus]
 gi|187951977|gb|AAI38547.1| RalA binding protein 1 [Mus musculus]
          Length = 648

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 78/256 (30%), Gaps = 38/256 (14%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-----QAIRDRLQQLFQKYI---- 440
            +  +             L      IK++  R  +      + ++  ++ L ++      
Sbjct: 373 LKQVTRPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGIKDLSKEERLWEV 432

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                  +   + A+ ++ +    + + S   +    ++ +  E  + + L     IL E
Sbjct: 433 QRILTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVINILLAQENEILTE 492

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           Q + LA  ++       L   + S                  +     L  ++       
Sbjct: 493 QEELLAMEQF-------LRRQIAS-----------------EKEEIDRLRAEIAEIQSRQ 528

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
               + TE    D     +    L      L RQ EE+E +   +      E+       
Sbjct: 529 QHGRSETEEYSSDSESESEDEEELQLILEDLQRQNEELEIKNNHLNQAVHEER-----EA 583

Query: 621 LHEVHIQIHQIESQEA 636
           + E+ +Q+  ++ Q A
Sbjct: 584 IIELRVQLRLLQMQRA 599


>gi|332212293|ref|XP_003255254.1| PREDICTED: kinesin-like protein KIF20B isoform 1 [Nomascus
            leucogenys]
          Length = 1782

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 54/140 (38%), Gaps = 8/140 (5%)

Query: 500  EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQV 557
            +  +E+  +  +  +++ L   L  +  E      E++ + L         L   L R+ 
Sbjct: 1186 KLKEEITQLTNNLQDMKHLLQ-LKEEEKETNRQETEKLKEELSASSACTQNLKADLQRKE 1244

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             D              + Q  ++   +    +LL  +  E+EK+  Q + + + ++    
Sbjct: 1245 EDYDDLKEKLNDAKKQIEQVQKEVSVMRNEEKLLRIKINELEKKKNQCSQELDMKQ---- 1300

Query: 618  ISILHEVHIQIHQIESQEAM 637
               + ++  Q++  + +EA+
Sbjct: 1301 -RTIQQLKEQLNNQKVEEAI 1319


>gi|332293248|ref|YP_004431857.1| ATP-dependent chaperone ClpB [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171334|gb|AEE20589.1| ATP-dependent chaperone ClpB [Krokinobacter diaphorus 4H-3-7-5]
          Length = 868

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 47/139 (33%), Gaps = 7/139 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             L+ ++Q++     D      +   +   +             R+ +      +K   R
Sbjct: 325 KALERRFQKVVVDEPDTESAISILRGIKDKYETHHKV-------RIKDDAIIAAVKLSQR 377

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            +    L     +       +   +  +  +   +L R+  ++E +I  +  + + +K  
Sbjct: 378 YITSRFLPDKAIDLMDEAAAKMRMEINSKPEELDVLDRRVMQLEIEIEAIKREKDEDKLK 437

Query: 616 ILISILHEVHIQIHQIESQ 634
            L + L  +  + + + +Q
Sbjct: 438 SLRADLANLKEERNDLNAQ 456


>gi|313109020|ref|ZP_07794993.1| ParB domain-containing protein nuclease [Pseudomonas aeruginosa
           39016]
 gi|310881495|gb|EFQ40089.1| ParB domain-containing protein nuclease [Pseudomonas aeruginosa
           39016]
          Length = 689

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 5/120 (4%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ-----VRDAGLWSATTEANIV 572
           +   LF++  +  Y     + +RL +     +  ++  +         G+  A  +A   
Sbjct: 253 IRRDLFAEGDKGVYLTDAALLERLAQDKLAGIAAKVQAEGWAWVDATPGMTHADLQAFQR 312

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             R+         +R   L  +  E+ + +       + EK   L      +  Q+  +E
Sbjct: 313 APRERRSPNKRDAQRIEKLQTKLHELAEAVDAALDDEDEEKADALQEEGERLGEQLQALE 372


>gi|307942493|ref|ZP_07657842.1| ATP-dependent chaperone protein ClpB [Roseibium sp. TrichSKD4]
 gi|307774314|gb|EFO33526.1| ATP-dependent chaperone protein ClpB [Roseibium sp. TrichSKD4]
          Length = 865

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 74/215 (34%), Gaps = 13/215 (6%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++K++ + +   R ++           +  +++    K +L     + + A++     
Sbjct: 318 EEYRKHVEKDAALARRFQPVFVSEPTVEDTVSILRGIKEKYELHHGVRITDTAIVSAATL 377

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE----- 548
               + +++     I   +    +L   + S   E        I  ++            
Sbjct: 378 SNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPEELDELDRRIIQLKIEREALKAEDDTA 437

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
              +L +  ++       ++A     +   ++     K    L + + ++  QIAQ   +
Sbjct: 438 TQDRLAKLEKELSDLEEQSDALTARWQSEKEKLNLEQKIKEQLEQARTDL--QIAQ--RQ 493

Query: 609 GEAEKTAIL-ISILHEVHIQIHQIESQE---AMIE 639
           G+  +   L    + ++  ++   E  E   AM++
Sbjct: 494 GDLARAGELAYGAIPDLERKLKDAEETEQGDAMVD 528


>gi|302830766|ref|XP_002946949.1| Kif9 type kinesin [Volvox carteri f. nagariensis]
 gi|300267993|gb|EFJ52175.1| Kif9 type kinesin [Volvox carteri f. nagariensis]
          Length = 1127

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 8/120 (6%)

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               +L++L +       E        +  +       E + + +   R A L +   E 
Sbjct: 753 LSEQQLERLQAECERLREEGGEAREALLRLQAECARLREAVGRAEAAERQAKLEAVQVER 812

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           ++    +  +Q   L +R RLL     E EK+ ++   +G+ E    LI  L  ++ Q+ 
Sbjct: 813 DVGPRPEAMKQ---LQERVRLL-----EAEKKRSETDHRGQLELKDKLIRQLENMNAQLQ 864


>gi|296474253|gb|DAA16368.1| coiled-coil alpha-helical rod protein 1 [Bos taurus]
          Length = 724

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/200 (11%), Positives = 69/200 (34%), Gaps = 22/200 (11%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
           + + E         + + H  Q+   +   Q    + KLS+     E  L          
Sbjct: 453 EQLREERNRLDAELQLSAHIIQQEVGRAREQGEAERQKLSEVAQQLEQEL---------- 502

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLD 554
            Q   + LA +       ++          ++       + + L ++       L +++ 
Sbjct: 503 -QRTQESLASLGLQLEAARQ--------GQQESTAEAASLRKELTQQQEIYGQALQEKVA 553

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                     + +E  + + R+ + +A+   ++ +  + +++E  +++ ++  +   E+ 
Sbjct: 554 EVEGRLREQLSESERRLNEARREHTKAVVSLRQIQRKATREKERNQELRRLQDEARKEEG 613

Query: 615 AILISILHEVHIQIHQIESQ 634
             L   L E+    + + + 
Sbjct: 614 QRLTQRLKELERDKNLMLAT 633


>gi|213022141|ref|ZP_03336588.1| hypothetical protein Salmonelentericaenterica_05502 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 387

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F     +     +  ++    +  +  +   +Q++L   +  K    R       + N P
Sbjct: 3   FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 62

Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +   L+ Q   L D           + L   +     +      E   ++   R   + 
Sbjct: 63  KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 122

Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598
           L QL +Q  DA       E         A +   +    QA +   +  +   +  ++  
Sbjct: 123 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 182

Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +++A++ ++   +++  L + L  +  Q++ +  +EA
Sbjct: 183 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 222


>gi|237845561|ref|XP_002372078.1| hypothetical protein TGME49_000010 [Toxoplasma gondii ME49]
 gi|211969742|gb|EEB04938.1| hypothetical protein TGME49_000010 [Toxoplasma gondii ME49]
          Length = 413

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 10/121 (8%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ--- 580
              V  +            E         L+  +R A           ++V +   +   
Sbjct: 281 DILVSHRALQRARREATRQEETLRGEEASLEAFIRVASEKREREGQRSLEVLRQRVENQT 340

Query: 581 -ALALYKRFRLLSRQKE--EIEKQ----IAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             LA+ +    L RQ+E  E+E++    +A      + E+   L +    V  QI Q+  
Sbjct: 341 AELAVLRVEAALERQREMVELERRRGDLLALALVAEDDEEYLRLSAEEEAVQRQIEQLAE 400

Query: 634 Q 634
           +
Sbjct: 401 E 401


>gi|195472771|ref|XP_002088672.1| GE11331 [Drosophila yakuba]
 gi|194174773|gb|EDW88384.1| GE11331 [Drosophila yakuba]
          Length = 735

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 49/151 (32%), Gaps = 21/151 (13%)

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
            L +      EL +++     + +  +     ++ +   ++    LL++L          
Sbjct: 491 NLENYELQRQELIRMYEHRIEELIRSQDSATSDMKRSHNDK-VEALLQKLAECNTRYSDM 549

Query: 564 SATTEANIVDVRQGYQQALALYKRF-----------RLLSRQKEEIEKQIAQVTAKGEAE 612
               E     +R+  +Q   L ++              + +Q +E E +I++     +  
Sbjct: 550 VPDYEQAKQRIRELEKQLEDLQRKLIEHEEKQNKMYLHMYQQGQEAE-RISRADQALDLA 608

Query: 613 KTA--------ILISILHEVHIQIHQIESQE 635
           +           L+  L     ++  I + E
Sbjct: 609 QRQPESKVSINELLHQLQSTQDELENIRASE 639


>gi|195157776|ref|XP_002019770.1| GL12027 [Drosophila persimilis]
 gi|194116361|gb|EDW38404.1| GL12027 [Drosophila persimilis]
          Length = 697

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           ++++L +   D        E  + + +  +    A   R R L  Q +E + Q+ Q  AK
Sbjct: 176 MIRELQKLYADERHLKDNIEMQLNNFKTQFASNEAENSRLRDLQAQLKEAKNQLRQFQAK 235

Query: 609 GEAEKTAILI---SILHEVHIQIHQIESQEAM 637
            E    A      S+LH+V  ++ Q++ Q A+
Sbjct: 236 AEHAAVANTTDNASLLHQVRQEMQQLKEQHAV 267


>gi|47213927|emb|CAF90750.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 600

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 67/218 (30%), Gaps = 9/218 (4%)

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             ++ +  +    LR     + ++R +QL++   TE    G+      R  + +     L
Sbjct: 259 DSRSIMGSVNPAALRTLSGASRQERNRQLWEGISTEEEDSGKVNALQLRLDESQKV---L 315

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
           ++    K  L+K     EA L    + +  + + + + L  +       Q     +  D 
Sbjct: 316 LKEREDKLALNKCIERLEAELSQWKLKYEELSKNKQEVLKQLNLLKEIHQDELGRISEDL 375

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
            ++             ++   EL  +++R   +        E    +     +    L  
Sbjct: 376 EDELGARTS------MDKKLAELRAEMERLQVENAAEWGRRERLETEKLALERDNKKLRA 429

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
               L  Q  +  +Q A             L     E+
Sbjct: 430 HAEDLEEQLAKKRRQAASALDCDLKAIQGELFERNKEL 467


>gi|27529913|dbj|BAA96036.2| KIAA1512 protein [Homo sapiens]
          Length = 2010

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 86/279 (30%), Gaps = 13/279 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
              +  +  +   L   D        N        +A L+   +     ++ +K       
Sbjct: 1640 ELSQVKAEVDRKLAEKDEECANLRRNHQRAVESLQASLDAETRARNEALRLKKKMEGDLN 1699

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS---LR 483
             +  +L    ++     +       +    +  +   QRL      + +  ++ +     
Sbjct: 1700 DLELQLGHATRQATEAQAATRLMQAQLKEEQAGRDEEQRLAAELHEQAQALERRASLLAA 1759

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E   L   +      +   ++  ++      L  L S       ++K    +    +L  
Sbjct: 1760 ELEELRAALEQGERSRRLAEQ--ELLEATERLNLLHSQNTGLLNQKKKLEAD--LAQLSG 1815

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   ++ + + +     +        ++++    +  L +  + L +   E++ ++ 
Sbjct: 1816 EVEEAAQERREAEEKAKKAITDAA-MMAEELKKEQDTSAHLERMKKTLEQTVRELQARLE 1874

Query: 604  QVTAK---GEAEKTAILISILHEVHIQI--HQIESQEAM 637
            +       G  ++   L + + E+  ++   Q +  EA+
Sbjct: 1875 EAEQAALRGGKKQVQKLEAKVRELEAELDAEQKKHAEAL 1913


>gi|146296604|ref|YP_001180375.1| SMC domain-containing protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145410180|gb|ABP67184.1| SMC domain protein [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 857

 Score = 40.6 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 40/220 (18%)

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           +IK   L+  Y Q + ++++Q       E   +G Y    A+   +K   + L  S    
Sbjct: 467 NIKLSSLKKQY-QELEEKVKQEEVLRTKEKKLHGAYENLKAKVEQKKQNIRNLQDSIF-- 523

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
               +     E  ++   +     L++   +L  + +D      L   +           
Sbjct: 524 -NDEQNIKACEQEVIKLELR----LKDLKDDLNKLNFDEENYNILLQKVKEL-------- 570

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                       +  LLK +              E N V         L   K    LS+
Sbjct: 571 ----------EVYQNLLKTI--------------EINKVKAENLRNHILEYQKEEDELSK 606

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           + +EI+++++ + ++  AEK + + S ++   I+I +++ 
Sbjct: 607 KIQEIDRELSDMLSQSSAEKLSKIKSDINSCEIKISRLQE 646


>gi|332251696|ref|XP_003274982.1| PREDICTED: ankycorbin isoform 1 [Nomascus leucogenys]
 gi|332251700|ref|XP_003274984.1| PREDICTED: ankycorbin isoform 3 [Nomascus leucogenys]
 gi|332251702|ref|XP_003274985.1| PREDICTED: ankycorbin isoform 4 [Nomascus leucogenys]
          Length = 980

 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 102/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 594 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 651

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L+
Sbjct: 652 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLK 711

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 712 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 770

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 771 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 830

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 831 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 868


>gi|330508286|ref|YP_004384714.1| chromosome segregation protein SMC [Methanosaeta concilii GP-6]
 gi|328929094|gb|AEB68896.1| chromosome segregation protein SMC [Methanosaeta concilii GP-6]
          Length = 1171

 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 72/229 (31%), Gaps = 23/229 (10%)

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             K +  +    + I +   +L ++              + +          L     V 
Sbjct: 286 THKGEDEQIEVKRRIEELKGELARETSKIQMAEKALNDLDRQQNASFIQLGNLSGEEEVL 345

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +  +  S+R+A+L   L +   +LQE  + L      + +   L   L      ++   
Sbjct: 346 AEKIRDASIRKASLEGELEDQNDLLQEVEESLTRE---DAQFSALREELERARGTREEA- 401

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                    +   G+LL++ DR +      S   E     +++              L  
Sbjct: 402 ---------KARLGDLLRERDRLLDATRRGSLEREELSGAIKEAMDALAGSDHEAEQLKE 452

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILH------EVHIQIHQIESQEA 636
           +   +  +  ++    +     +  + L       E   ++++++S+ A
Sbjct: 453 ELAGLNSRAMELEKDRDD----LESARLRLRREIAEAEREMNKLQSEFA 497


>gi|310823067|ref|YP_003955425.1| hypothetical protein STAUR_5837 [Stigmatella aurantiaca DW4/3-1]
 gi|309396139|gb|ADO73598.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1609

 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 72/229 (31%), Gaps = 13/229 (5%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + ++D L +  ++  T          + A+       S++   ++  +   +++  L +
Sbjct: 386 VEHLKDELARAQEEARTATDAVLMKDAELAQLARGLEESRQRAVTAESRRHEAEQQRLSQ 445

Query: 485 AALLLTLINHPAI----LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            ++L  L                +L  ++ +    +     L       +  + +   + 
Sbjct: 446 ESVLRGLETELESSRADAARLKAQLESLQREEAHARDAAEKLEEALQAARERMVD--LEE 503

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LLSRQKEEIE 599
             E+      + LD +   A       E    +  +     LA     R  L +Q +E+ 
Sbjct: 504 DREKASATFAQALDAERELAEQRLEQVEIEARERTEALASRLAGETAGREALEQQVQELR 563

Query: 600 KQIA-----QVTAKGEAEKTAILISILHEVHIQIHQ-IESQEAMIEGFG 642
            Q+      +        +       L     ++ Q +  +E+ ++  G
Sbjct: 564 AQLQTESSVRADMALSLAQAEEQAEELIAAREELQQRLAGKESALDALG 612



 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 73/228 (32%), Gaps = 17/228 (7%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL--SK 478
           R    Q +++RL    ++ + +        +       Q   +Q   +    + +   + 
Sbjct: 256 RELEQQVLQERLSDAERRLMQQRLEMEDAQRAQTEASVQVLAAQEAHRLERARREEVGAS 315

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
               RE           A +++   E++++R D  + +           +++ +      
Sbjct: 316 LEETRERLTQAY-----AQVRDLQDEISNLRIDREKDRIAADRAQEQAEDRRRYAEAARE 370

Query: 539 QRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
           + L   G           L  +L R   +A   +        ++ Q  +      +R   
Sbjct: 371 RELRIAGQYSSALAAVEHLKDELARAQEEARTATDAVLMKDAELAQLARGLEESRQRAVT 430

Query: 591 LSRQKEEIEKQ--IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              ++ E E+Q    +   +G   +     +    +  Q+  ++ +EA
Sbjct: 431 AESRRHEAEQQRLSQESVLRGLETELESSRADAARLKAQLESLQREEA 478


>gi|228993275|ref|ZP_04153191.1| hypothetical protein bpmyx0001_40070 [Bacillus pseudomycoides DSM
           12442]
 gi|228766343|gb|EEM14986.1| hypothetical protein bpmyx0001_40070 [Bacillus pseudomycoides DSM
           12442]
          Length = 786

 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 55/162 (33%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +R    
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDR 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A    K+   L R   E+++QI +   +
Sbjct: 508 ARNHIGTDTNKIENMIAKLEESQKNAEREWNEAEEHRKQSEKLHR---ELQRQIIEFNDE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIHELRQLRKAQLANVK 606


>gi|242009359|ref|XP_002425455.1| hypothetical protein Phum_PHUM202100 [Pediculus humanus corporis]
 gi|212509291|gb|EEB12717.1| hypothetical protein Phum_PHUM202100 [Pediculus humanus corporis]
          Length = 1749

 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 30/299 (10%), Positives = 86/299 (28%), Gaps = 40/299 (13%)

Query: 372  EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
             +   E +P     +         +  +   ELE  +    ++      R      + +R
Sbjct: 807  NRQDSEVVPKKSNRYHDILRMSWADHMETLDELEKLVVQDCSN--KGMTRDEQLDTL-ER 863

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            L++   ++        +     +R R      ++         +  ++  + +A  L  L
Sbjct: 864  LEEFVARHPGRALELHQKLSSPSRRRTMLDTVKKFQARQAKALEKREQLKMEKAQKLREL 923

Query: 492  INH--------PAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEIHQRL 541
            +            +++++ Q L        E + L     +     E++          L
Sbjct: 924  LKKVDEVKAAKDKLIEDRRQRLEMKLKRAAENRNLHLKEIMRKAHDEEEKLKEIAFINEL 983

Query: 542  CER-----------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
              +              + L+ +  + +      A  EA + + R+  +           
Sbjct: 984  EAQNKRHDFMTQCQEQEDRLQGIHEERQRKQEEKAAKEAAVEERRKAIEAERQEKLEKMQ 1043

Query: 591  LSRQKEE----------------IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
              ++K +                + ++ A+  ++      A  +    E+  +I Q + 
Sbjct: 1044 ERQRKRDEQVDKKKQEKEKERQELAREKARDRSERLEALHAAQLEAQEELQKKIQQKQE 1102


>gi|297583686|ref|YP_003699466.1| MutS2 family protein [Bacillus selenitireducens MLS10]
 gi|297142143|gb|ADH98900.1| MutS2 family protein [Bacillus selenitireducens MLS10]
          Length = 786

 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 45/140 (32%), Gaps = 6/140 (4%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH----QRLCERGFGELLKQ--LDRQVRD 559
           A + +D   L+  +  L         F   +        + E G         +++ +  
Sbjct: 466 ASVEFDVETLRPTYRLLIGIPGRSNAFAISKRLGLGDDIIEEAGLHVTADSNKMEKMISS 525

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
                   E +  +     Q+A AL+        + E  +++I +   +   +     + 
Sbjct: 526 LEDSRKAAEKDYDEADALLQEAEALHAELAEELERIEVEKERIFERAEEKANKAVEKAME 585

Query: 620 ILHEVHIQIHQIESQEAMIE 639
               +  ++ ++++    I+
Sbjct: 586 EAEFIIAELREMQANAPSIK 605


>gi|2072423|gb|AAC51257.1| huntingtin interacting protein 1 [Homo sapiens]
 gi|119592174|gb|EAW71768.1| huntingtin interacting protein 1, isoform CRA_b [Homo sapiens]
          Length = 914

 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/214 (8%), Positives = 74/214 (34%), Gaps = 3/214 (1%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             ++   +F    +             +        +   + S +K +L    +  +  +
Sbjct: 220 FDNKFDDIFGSSFSSDPFNFNSQNGVNKDEKDHLIERLYREISGLKAQLENMKTESQRVV 279

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-HQRLCERGF 546
           L    +   +  +  ++    +   ++ + L + L     +++     +     +  +  
Sbjct: 280 LQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQ 339

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
               +    + + + L     +    +     +Q     +    L R+K+E+E  + +++
Sbjct: 340 ANEQRYSKLKEKYSELVQNHADLLRKNAEVT-KQVSMARQAQVDLEREKKELEDSLERIS 398

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +G+  KT   + +L  +  ++   + +  +++G
Sbjct: 399 DQGQR-KTQEQLEVLESLKQELATSQRELQVLQG 431


>gi|73972056|ref|XP_855659.1| PREDICTED: similar to tripartite motif-containing 39 isoform 2
           isoform 2 [Canis familiaris]
          Length = 498

 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 69/187 (36%), Gaps = 2/187 (1%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
             + R       +   S     ++   +   I   ++  + ++ L+   Y++ E   L  
Sbjct: 70  RKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYEDQEAVCLIC 129

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ- 579
            +            ++  Q   E+   + L+ L++++++     ++ E    ++++  + 
Sbjct: 130 AISHTHRAHTVVPLDDATQEYKEK-LQKCLEPLEQKLQEITRCKSSEEKKPGELKRLVEC 188

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +   + K F  L R+ +E ++ +     + E +    L      +  +   +    A +E
Sbjct: 189 RRQQILKEFEELHRRLDEEQQMLLSRLEEEEQDILQRLRENAAHLGDKRRDLAHLAAEVE 248

Query: 640 GFGKMSG 646
           G    SG
Sbjct: 249 GKCLQSG 255


>gi|125778364|ref|XP_001359940.1| GA10509 [Drosophila pseudoobscura pseudoobscura]
 gi|54639690|gb|EAL29092.1| GA10509 [Drosophila pseudoobscura pseudoobscura]
          Length = 697

 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           ++++L +   D        E  + + +  +    A   R R L  Q +E + Q+ Q  AK
Sbjct: 176 MIRELQKLYADERHLKDNIEMQLNNFKTQFASNEAENSRLRDLQAQLKEAKNQLRQFQAK 235

Query: 609 GEAEKTAILI---SILHEVHIQIHQIESQEAM 637
            E    A      S+LH+V  ++ Q++ Q A+
Sbjct: 236 AEHAAVANTTDNASLLHQVRQEMQQLKEQHAV 267


>gi|329666404|gb|AEB92352.1| replicative DNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 457

 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 10/144 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +     S  E A+L  +   P  + +    L    +  +  + ++  + +    ++   
Sbjct: 6   SQQIPHDSEAEKAVLGAVFLDPEAIIDASDILQPDDFYEHANRIVFQAMLNISDREEVID 65

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  +   L +            QV D G  +  TE ++      +    A   + + + R
Sbjct: 66  PVTLQDELKKN----------NQVDDIGGIAYVTELSMATPTAAHVTYYAKIVKRKAILR 115

Query: 594 QKEEIEKQIAQVTAKGEAEKTAIL 617
                 ++I Q   +G  + T IL
Sbjct: 116 NLISTSQRIIQNAIEGSDDVTDIL 139


>gi|327287890|ref|XP_003228661.1| PREDICTED: myosin-6-like [Anolis carolinensis]
          Length = 1938

 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 29/268 (10%), Positives = 84/268 (31%), Gaps = 15/268 (5%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
              +     +     + E       +    +E    +     + +       + +   L +
Sbjct: 1567 FSQIKADTERKLAEKDEEMEQAKRNHMRMIESLQASLDAETRSRNEALRVKKKMEGDLNE 1626

Query: 435  LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
            +  +    +       K     +     +Q  +   L   +  K+        +  +   
Sbjct: 1627 MEIQLSQANRVAVEAQKHLKIAQAHLKDNQIQLDDVLRANEDLKEN-------IAIVERR 1679

Query: 495  PAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEI----HQRLCERGFGEL 549
             A+LQ + +EL ++       +KL    L       + F  +       ++  E    +L
Sbjct: 1680 NALLQAELEELRNVVEQTERGRKLAEQELIEASERVQLFHSQNTSLINQKKKMESDLSQL 1739

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
              +++  V++        +  I D     ++          L R K+ +E+ I  +  + 
Sbjct: 1740 QSEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQMRL 1799

Query: 610  EAEKTAIL---ISILHEVHIQIHQIESQ 634
            +  +   L      L ++  ++ ++E++
Sbjct: 1800 DEAEQLALKGGKKQLQKLEARVRELENE 1827


>gi|238757634|ref|ZP_04618818.1| Chromosome partition protein mukB [Yersinia aldovae ATCC 35236]
 gi|238704139|gb|EEP96672.1| Chromosome partition protein mukB [Yersinia aldovae ATCC 35236]
          Length = 1474

 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/213 (8%), Positives = 69/213 (32%), Gaps = 13/213 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              ++ +L    Q    + +   +Y +        +   Q    ++    +  +    +E
Sbjct: 381 VDELKSQLADYQQALDVQQTRAIQYQQALQALERARALCQLPELTADNADEWLETFQAKE 440

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCE 543
                +L+          Q+L+     +++ ++ +  +     +  +    +   + L +
Sbjct: 441 QEATESLLQ-------LEQKLSVADAAHSQFEQAYQLVVDIAGQVSRSEAWQTARELLRD 493

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR---LLSRQKEEIEK 600
               + L +  + +R              D  +  Q+      +      L   + E+E 
Sbjct: 494 WPSQQHLAERVQPLRMRLSELEQRLRAQQDAERLLQEFCKRQGQAYQPEELEALQRELES 553

Query: 601 QIAQVTAKGEA--EKTAILISILHEVHIQIHQI 631
            + +++       E+   +   L ++ ++I ++
Sbjct: 554 TVEELSLSVNDAGERRMEMRQELEQIKLKIQEL 586


>gi|114654485|ref|XP_001148776.1| PREDICTED: Golgi autoantigen, golgin subfamily a, 5 isoform 3 [Pan
           troglodytes]
          Length = 691

 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 78/269 (28%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK----LRYYYSQAIRDRLQ 433
           +      + K   +            LE         ++DQ     L+    Q +++RL 
Sbjct: 296 AKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTLQERLH 355

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 356 EADATLKREQESYKQMQSEFA---------ARLNKVEMERQNLAEAITLAER-------K 399

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    +   +    ++     L+     L     +        E++   L E    E L 
Sbjct: 400 YSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLD 459

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 460 SSTANSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHD 519

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   IE
Sbjct: 520 QIAGQKASK--QELETELERLKQEFHYIE 546


>gi|56899943|ref|YP_173317.1| hypothetical protein pBT9727_0074 [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|56800377|gb|AAW31044.1| conserved hypothetical protein [Bacillus thuringiensis serovar
          konkukian str. 97-27]
          Length = 341

 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 52 SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAI 95
          S   +  K  +Y  S  V G+ ++F+  + G SF  ++QRL   
Sbjct: 50 SLIIDRKKNQFYWNSRGVNGNIINFVQEVEGASFPGAMQRLLER 93


>gi|73998667|ref|XP_544044.2| PREDICTED: similar to eukaryotic translation initiation factor 3,
           subunit 10 (theta) isoform 1 [Canis familiaris]
          Length = 1291

 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616



 Score = 37.2 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 94/260 (36%), Gaps = 23/260 (8%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL----FQKYITEH 443
              + +             + +     I     R    +  ++RL+ L     ++ + + 
Sbjct: 541 HILQEKEEQHQLAVTAYLKNSRKEHQRI---LARRQTIEERKERLESLNIQREKEELEQR 597

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
               +  +K    R ++   +R  +  L + +  KK ++RE       I    +  + ++
Sbjct: 598 EAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTVRERL---EQIKKTELGAKAFK 654

Query: 504 ELADIRYD--NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDA 560
           ++     +  + +       + +  VEQ     +E+ +RL  +    +  ++  R     
Sbjct: 655 DIDIEDLEELDPDF------IMAKQVEQLEKEKKELQERLKNQEKKIDYFERAKRLEEIP 708

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-EIEKQIAQVTAKGEAEKTAILIS 619
            + SA  E  I D+   ++Q          L R+K  E + +++++    +      L +
Sbjct: 709 LIKSAYEEQRIKDM-DLWEQQEEERITTMQLEREKALEHKNRMSRMLEDRDL-FVMRLKA 766

Query: 620 ILHEVHIQIHQIESQEAMIE 639
               V+ +  + + +E + E
Sbjct: 767 ARQSVYEEKLK-QFEERLAE 785


>gi|71414808|ref|XP_809492.1| vesicular transport-associated repeat protein [Trypanosoma cruzi
           strain CL Brener]
 gi|70873884|gb|EAN87641.1| vesicular transport-associated repeat protein, putative
           [Trypanosoma cruzi]
          Length = 1174

 Score = 40.6 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 70/249 (28%), Gaps = 2/249 (0%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            + +      ++  +     + IN   +        Q    R+Q+         +     
Sbjct: 221 KQTKYMRHQIKKTGITEESISRINQHDEFNKEDILRQLTDKRIQKKGNDLRKTTNSTNTK 280

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
            + N   ++ +              + ++   L E      L       +   +E    R
Sbjct: 281 EEANISVKEAEARRLAEEAEVRRLAEEAEARRLAEEVEARRLAEEAEARRLAEEEAEARR 340

Query: 510 YDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
                E ++L     +  + ++      + +    R   E  +        A       E
Sbjct: 341 LAEEAEARRLAEEAEARRLAEEEAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEE 400

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIE-KQIAQVTAKGEAEKTAILISILHEVHIQ 627
           A    + +   +A  L +      R  EE E +++A+        + A     L E   +
Sbjct: 401 AEARRLAEEAAEARRLTEEAAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAAE 460

Query: 628 IHQIESQEA 636
             ++  + A
Sbjct: 461 ARRLAEEAA 469



 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 53/210 (25%), Gaps = 2/210 (0%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             RL +   +            +       ++   +      L +     +    EAA  
Sbjct: 557 ARRLAEEAAEARRLAEEEAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAAEA 616

Query: 489 LTLINHPAILQEQYQELADIRYDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
             L    A  +   +E    R     E ++L           +      + +    R   
Sbjct: 617 RRLAEEEAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAEARRLAEEAEARRLA 676

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE-KQIAQVT 606
           E   +  R   +A       EA                       R  EE E +++A+  
Sbjct: 677 EEAAEARRLAEEAEARRLAEEAAEARRLTEEAAEARRLAEEAEARRLAEEAEARRLAEEA 736

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 + A     L E   +  ++  + A
Sbjct: 737 EARRLAEEAAEARRLAEEAAEARRLAEEAA 766



 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/372 (9%), Positives = 97/372 (26%), Gaps = 10/372 (2%)

Query: 273 FIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAY 332
            ++L   Y    ++    +   +S   + +      +  +    + L  +          
Sbjct: 80  PLLLRLTYEQREAMHVDEIIREISEAVSVIAIRSDTVHREARFLLSLSLEEQIAHTSDFI 139

Query: 333 KAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETEN 392
              D     +         +L   + P      +      + I                 
Sbjct: 140 NCYDWWEKLVNRRLSSCQEILRNCQCPPESEESHTIFLLNQRIHSIREKCTQDMATIASR 199

Query: 393 RSFNTPDERAELEI----HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG- 447
                 +    LE            +++ Q  +   ++    R+ Q  +    +      
Sbjct: 200 GRILRDERYDFLEKIPCGDQTKQTKYMRHQIKKTGITEESISRINQHDEFNKEDILRQLT 259

Query: 448 -RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
            +  +K      +   S    + + +  K ++   L E A +  L       +   +  A
Sbjct: 260 DKRIQKKGNDLRKTTNSTNTKEEANISVKEAEARRLAEEAEVRRLAEEAEARRLAEEVEA 319

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
               +  E ++L           +      + +    R   E   +  R   +A      
Sbjct: 320 RRLAEEAEARRLAEEEAEARRLAEEAEARRLAEEAEARRLAEEEAEARRLAEEAEARRLA 379

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV-- 624
            EA    + +   +A  L +      R+  E   +  ++T +    +     +    +  
Sbjct: 380 EEAEARRLAEEAAEARRLAEEAEA--RRLAEEAAEARRLTEEAAEARRLAEEAEARRLAE 437

Query: 625 HIQIHQIESQEA 636
             +  ++  + A
Sbjct: 438 EAEARRLAEEAA 449



 Score = 37.2 bits (84), Expect = 8.3,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 73/255 (28%), Gaps = 7/255 (2%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
             E E R      E   L           ++       ++   +  +   +      +   
Sbjct: 774  EEAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAAEARRLAEEAEARRLAEEA 833

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
               ++ A   + +  ++   ++  +  + ++   L E A    L       +   +  A 
Sbjct: 834  AEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAEARRLAEEAEARRLAEEAEAR 893

Query: 508  IRYDNNELQKLWSF------LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
               +  E ++L         L  +  E +    EE   R       E  +  +       
Sbjct: 894  RLAEEAEARRLAEEAAEARRLAEEEAEARRLAEEEAEARRLAEEEAEARRLAEEAAEARR 953

Query: 562  LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
            L     EA  +       + LA     R L+ +  E  +   +        + A     L
Sbjct: 954  LTEEEAEARRLAEEAAEARRLAEEAESRRLAEEAAEARRLAEEAAEARRLAEEAAEARRL 1013

Query: 622  HEVHIQIHQIESQEA 636
             E   +  ++ ++EA
Sbjct: 1014 AEEAAEARRL-AEEA 1027


>gi|296203385|ref|XP_002748875.1| PREDICTED: 5-azacytidine-induced protein 1, partial [Callithrix
           jacchus]
          Length = 866

 Score = 40.6 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 89/288 (30%), Gaps = 24/288 (8%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           D         + A  + +       +   +R          +++  L    +  +  +K 
Sbjct: 427 DLTVRRVKETEKALSRQLQRQREHYEATIQRHLA-FIDQLIEDKKILSEKCEAVVAELKQ 485

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  R        +R+ ++ +++  E            +   +K  S++  +   +  +  
Sbjct: 486 EDQR------CSERVARVQEQHELEIKKLKEIMSATEKVHREKWISEKTKKIKEITVRG- 538

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK---LWSFLFSDFVEQKYFLP 534
                 E  +   +  H   L+            ++E      L      +  EQ     
Sbjct: 539 -----LEPEIQKLIARHKQELRRLKSLHEAELLQSDERASQRCLRQA--EELREQLEREK 591

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-QQALALYKRFRLLSR 593
           E + Q+  ER      + L+++            + + + ++   QQA         L +
Sbjct: 592 EALGQQERERARQRFQQHLEQEQWVLQQQRQRLYSEVAEEKERLGQQAARQRAELEELRQ 651

Query: 594 QKEE----IEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQEA 636
           Q EE    + + +     KG  E+       L  +  Q+  + ++ EA
Sbjct: 652 QLEESSSALTRALRAEFEKGREEQERQHQMELKALKQQLELERQAWEA 699


>gi|289615100|emb|CBI58170.1| unnamed protein product [Sordaria macrospora]
          Length = 734

 Score = 40.6 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 87/265 (32%), Gaps = 16/265 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS----QAIRDRL 432
           E++     + + E E         ++  +  +    + +++ +    ++    Q +  R+
Sbjct: 260 EAMSQDREILRAEVEQLRKQLESIQSTHDEEVSQLRSDLEESEAAKEHAETQYQNLLGRV 319

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           +++ +             ++     ++   + +  +    + +       RE   L +  
Sbjct: 320 EKIKETLGERLKRDRARVEELETANEELQQAAQTQEEETAQLREQLAEQAREIDGLRSRT 379

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           N   + Q+ + +      ++   + L S L         +    + +R    G       
Sbjct: 380 N---LSQQNWGK-EREDLEHEV-EHLRSELKKTSAAMGEWEVIAMEERSMREGLEAKATD 434

Query: 553 LDRQ---VRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSRQKEEIEKQIAQVTA 607
           L+ Q   VR+A    A           G Q+AL   +  R R L    E  E+Q+A +  
Sbjct: 435 LEEQLANVREAYERVAEERNTQSQAIDGLQRALQEIQEARKRELREMVESSEEQLAAMKK 494

Query: 608 KGEAE--KTAILISILHEVHIQIHQ 630
           + E    K          +  ++ +
Sbjct: 495 RAEEADAKAKEAQDARESLQKELER 519


>gi|260817685|ref|XP_002603716.1| hypothetical protein BRAFLDRAFT_126882 [Branchiostoma floridae]
 gi|229289038|gb|EEN59727.1| hypothetical protein BRAFLDRAFT_126882 [Branchiostoma floridae]
          Length = 1139

 Score = 40.6 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 95/284 (33%), Gaps = 32/284 (11%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            +        + + E+   +++L      + +             ++   N ++D  ++ 
Sbjct: 164 AQQLEVDQLRERLEEAQTDLELLKNEIATSGTEGAATSFQ--VKQMEEQNNRLRDALVK- 220

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              + +    +Q  QK   E        K   + +++        ++++ + K     +L
Sbjct: 221 --MRDLSQSEKQENQKLQKEIDKNNSQLKTLTQQKEKLSKEVEEAEATVDELKEQVDAAL 278

Query: 483 REAALLLTL----INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
               ++  L    +     +QE  +++ D+             +     E +    +   
Sbjct: 279 GAEEMVEHLTERNLQQEERIQELEEQVGDLE-----------AMHEMDEEMQESARD--- 324

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               E    E +   + +VR+       ++  I D++Q   +   L  + R  +    E 
Sbjct: 325 ---NEIEMREEIDMANSKVREFQRKLEASQEMIADLQQTITKYRDLTTQLREKNEDLAEQ 381

Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA 636
             ++ +       E      K A + +   ++ +++ ++E Q+A
Sbjct: 382 TAELGKQEPTTPVETFDFKTKFAEVKAHAKQIDMELRKLEVQQA 425


>gi|194898825|ref|XP_001978963.1| GG12961 [Drosophila erecta]
 gi|190650666|gb|EDV47921.1| GG12961 [Drosophila erecta]
          Length = 1403

 Score = 40.6 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 21/222 (9%), Positives = 80/222 (36%), Gaps = 14/222 (6%)

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           +K+++ R  + + +  +L+   ++            +     ++ +   +R ++  L   
Sbjct: 497 LKERQERAEFERKVWKKLETERREREEFERNRQEELRILKERQENEEFERRELEKKLDAD 556

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
              K+   R+       +    + ++ +++L                +  +F  Q+    
Sbjct: 557 LKQKEELERQREDKRKELRDKELERKIFEKLEAD-----------RKIREEFERQRQEEL 605

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           + + +R  +  F    K+L++++          +    +  +  +   +  +  R +  +
Sbjct: 606 KNLRERQEKEEFER--KELEKKLEAEQKQKEDIKKLREEDLKCLKSLQSREEFERQVLEK 663

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             E E++  +   K   E+     + + E+  +   ++ ++A
Sbjct: 664 L-EAERKEREAFEKKTCEEREREENKIEELKKKFKDLQERDA 704


>gi|167536081|ref|XP_001749713.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771861|gb|EDQ85522.1| predicted protein [Monosiga brevicollis MX1]
          Length = 684

 Score = 40.6 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 30/232 (12%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           R  +L Q++      + R  K+     + +      +   L + K  +  S RE   L  
Sbjct: 225 RFTELEQRHRAAREQWEREAKQAQAALEAQVRELTTLNGQLREVKFQQDGSSRE---LSL 281

Query: 491 LINHP---------AILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEIHQ 539
            + H           +   + +          + ++L            ++    E +  
Sbjct: 282 KLEHAHKMNIETTAELTATRERLQQRDTLVEQQAERLASLQATVERLEAERNTGAERLQD 341

Query: 540 RLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALALYKR 587
           RL         +++L  ++R A   +A  E  +                   Q     +R
Sbjct: 342 RLQTLSQAQRQVEELKVELRQAQQHAAALERTLQSSVAEIHKGNGVISNLHHQLTTAGER 401

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEAM 637
              L+ +  E ++QI  + A+ E   +++    + L +V  +   +E  EA+
Sbjct: 402 EERLAHELTEAQEQITALQAEREKLRDQSVRTENELQQVRKEQSALE--EAL 451


>gi|254245313|ref|ZP_04938634.1| Replicative DNA helicase [Burkholderia cenocepacia PC184]
 gi|124870089|gb|EAY61805.1| Replicative DNA helicase [Burkholderia cenocepacia PC184]
          Length = 455

 Score = 40.6 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 42/152 (27%), Gaps = 9/152 (5%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                     E ++L  L+     L+E    +++  +   E   ++  +           
Sbjct: 9   AHARTSAPEAEQSILGALLLDNGALEEIAGVVSEADFTIGEHALVFKAIRELIQRGARAD 68

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV-RQGYQQALALYKRFRLLS 592
              + +RL             +  +     +    A       + Y + +      R + 
Sbjct: 69  AVTVFERLHSVD--------AKVDQPLAFLTDLVHATPSAAGVRHYAEIVRNRSISRRML 120

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           R  E +   + +   K   E   +    L ++
Sbjct: 121 RVSERLRNAVLKPGGKSPLELLDLAQGELLKI 152


>gi|145481671|ref|XP_001426858.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393935|emb|CAK59460.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1948

 Score = 40.6 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 25/207 (12%), Positives = 76/207 (36%), Gaps = 9/207 (4%)

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
            Q     ++      + + ++      +    +   S + + K        +  ++ T  N
Sbjct: 960  QFENNKLSREIASSKQYSESVVINLNEKKQYQSQDSEIAQLKNQLADKTHQLKIIQT--N 1017

Query: 494  HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                ++E  Q ++ +  +N  + ++ + + S    Q   L E++ ++  +     + +++
Sbjct: 1018 SQNTMEELQQVISKLGLENKNINEVHNSIKSRLEAQINKLIEQLKEK--DIQINRISEEI 1075

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE-----KQIAQVTAK 608
             ++ +               V Q  QQ  +L  +   L+ + +E++     +  ++    
Sbjct: 1076 RKKEQINKQQEDDLLMKSNQVEQLIQQNKSLALQLNNLNFELQELKMASLSQSFSKSHFD 1135

Query: 609  GEAEKTAILISILHEVHIQIHQIESQE 635
                +   L S +  + IQI  +E  +
Sbjct: 1136 ARESENQELQSEIQSLRIQIQTLEQTQ 1162


>gi|189426540|ref|YP_001953717.1| chromosome segregation protein SMC [Geobacter lovleyi SZ]
 gi|189422799|gb|ACD97197.1| chromosome segregation protein SMC [Geobacter lovleyi SZ]
          Length = 1177

 Score = 40.6 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 545 GFGELLKQLDRQVRDAG-LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                L  L RQ + A        E   +D++    QA  L        +Q  E++ ++ 
Sbjct: 200 EIKRQLNSLQRQAKKAEKFREYREELREIDLQFTLHQASTLQHDQHQAEQQLAELKNRMQ 259

Query: 604 QVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
           ++    +     + +  L  +  +    I+ +E
Sbjct: 260 EIVTAADTADNQVELQRLAMLEAEKALNIQQEE 292


>gi|73670758|ref|YP_306773.1| hypothetical protein Mbar_A3313 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397920|gb|AAZ72193.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 385

 Score = 40.6 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/161 (11%), Positives = 49/161 (30%), Gaps = 11/161 (6%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +  + +   + +     P  +      +     +      +     +     ++D 
Sbjct: 54  PYIGLLNHDEHEMQDMRFPDSPPGEFHPDPYSMYTLRHATSLLDKNIEKAEAISVRLEDG 113

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
               +Y +       +   K       Y R  K+  ++R     +     S     + + 
Sbjct: 114 I--EHYKEE-----GEDVSKLEVLLEKYNRLIKEAEQYRALADAAAENSSSIENSNQYTG 166

Query: 479 KPSLREAALL----LTLINHPAILQEQYQELADIRYDNNEL 515
                E   L      +I    +L++ ++EL+ + + + EL
Sbjct: 167 SSENMERDYLIQSQKCMIQANHVLRDIFEELSSLTFASEEL 207


>gi|54261797|ref|NP_001003599.1| GRIP and coiled-coil domain-containing protein 1 [Danio rerio]
 gi|50417153|gb|AAH78323.1| GRIP and coiled-coil domain containing 1 [Danio rerio]
          Length = 802

 Score = 40.6 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 10/147 (6%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQV 557
           QE  +  A +  D  + Q     L   F E K  +  + H+R  E+G   L L++L + +
Sbjct: 215 QELEELQARLEEDKKQHQAELQNLQEQFAESKARVITQQHEREQEQGDHALMLRELQKLL 274

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKR-------FRLLSRQKEEIEKQIAQVTAKGE 610
           ++        E  + D R    +A+    R        + + +++EE++K +     +  
Sbjct: 275 QEERGLRQDAELKLEDARATLAEAMQAADRGLDYESQLKEIIQEREELKKSLKAAAVENS 334

Query: 611 A--EKTAILISILHEVHIQIHQIESQE 635
               +   L     ++    +Q   QE
Sbjct: 335 KPDPRVEELQQENADLKAHFNQQLQQE 361


>gi|15669839|ref|NP_248653.1| chromosome segretation protein [Methanocaldococcus jannaschii DSM
           2661]
 gi|18202582|sp|Q59037|SMC_METJA RecName: Full=Chromosome partition protein smc homolog
 gi|2826443|gb|AAB99663.1| chromosome segretation protein (smc1) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 1169

 Score = 40.6 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 55/143 (38%), Gaps = 4/143 (2%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ--L 553
            +  E   ++ +I  +   L+   + + ++  E+      E+H+ + E        +  L
Sbjct: 257 ELKNEFLSKVREIDVEIENLKLRLNNIINELNEKGNEEVLELHKSIKELEVEIENDKKVL 316

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           D  + +        E    ++++  ++ +          +Q +EIE++I  +    E E+
Sbjct: 317 DSSINELKKVEVEIENKKKEIKETQKKIIENRDSIIEKEQQIKEIEEKIKNLN--YEKER 374

Query: 614 TAILISILHEVHIQIHQIESQEA 636
               I+    +   + + E + A
Sbjct: 375 LKEAIAESESIIKHLKESEMEIA 397


>gi|332245966|ref|XP_003272122.1| PREDICTED: coiled-coil alpha-helical rod protein 1-like isoform 4
           [Nomascus leucogenys]
          Length = 782

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 46/117 (39%), Gaps = 3/117 (2%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDV 574
           L   +     ++       + Q L ++       L +++           + TE  + + 
Sbjct: 581 LQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEA 640

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           R+ + +A+   ++ +  + Q++E  +++ ++  +   E+   L   L E+    + +
Sbjct: 641 RREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLAWRLQELERDKNLM 697


>gi|326920302|ref|XP_003206413.1| PREDICTED: liprin-alpha-1-like [Meleagris gallopavo]
          Length = 1232

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 96/318 (30%), Gaps = 22/318 (6%)

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
             T  +L +L + + +     DG                     G+           D +
Sbjct: 197 GTTHKELMILKEQNNQKKTLPDGMLDINHEQENTPTTNGKRSSDGSLC--------HD-E 247

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK---D 417
           +  +            +    +       +   +    D     +  +K+   + K   D
Sbjct: 248 NLAKVIELQDIIDKQNKEQTQMKERLTALSSRVTELEEDLDTARKDLIKSEEMNTKLQRD 307

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR-HRDQKGPSQRLMQSSLVKGKL 476
            +      + + +R+  L ++Y+            N +   +         QS     +L
Sbjct: 308 VRETMAQKEDMEERITTLEKRYLAAQREATSVHDLNDKLENEIATKDSMHRQSEDKNRQL 367

Query: 477 SKKPSLREAAL---LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            ++  L E  L   L      P +  E  Q +A +         +      + + Q    
Sbjct: 368 QERLELAEQKLQQTLRKAETLPEVEAELAQRVAALSKAEERHGNI-----EERLRQMEAQ 422

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            EE +Q L      E + +   +     +    +E+N   ++   ++ +A  +    L R
Sbjct: 423 LEEKNQELQRARQREKMNEEHNKRLSETVDKLLSESN-ERLQLHLKERMAALEDKNSLLR 481

Query: 594 QKEEIEKQIAQVTAKGEA 611
           + E  +KQI ++  + + 
Sbjct: 482 EIENAKKQIEELQHEKDK 499


>gi|223999343|ref|XP_002289344.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974552|gb|EED92881.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1252

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 25/278 (8%), Positives = 93/278 (33%), Gaps = 18/278 (6%)

Query: 363 IRCYGKTAFEKLIVESLPLVD--MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            +        +L  E+    +     + E   +  +  ++   +  H  +      D+  
Sbjct: 536 RQQRQADHERRLEEEARLEQERIQQIEEEAAAKRRSPREKMQAILDHFADVTRTSTDRVT 595

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +          L++   K   +     +  + +A+        Q             +  
Sbjct: 596 Q----------LREKRVKLNKDKLNAEKAQRYSAQQISYAEAQQTKAAEEEDFESADRLA 645

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           S+ E   +  +     I++     + ++  +    +++ S   +    +     +++   
Sbjct: 646 SVIERHTVEKVEQS-NIVKVIVATIEELDRE----REVASKAVAGCFSEVCSKLKDLQNE 700

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
              R   +    L +    +   S+ ++    D++   +    + +  + L+ Q +   K
Sbjct: 701 QEARRKEDGTDVLAQFATTSKRLSSESDRLGNDLKHIERDEELVAEEQKELNSQIDTETK 760

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           +  + +++   EK  ++   + ++  Q+ ++E++ A +
Sbjct: 761 EFEEKSSEA-GEKLNVVNKRIEDLKRQLVEVEAEAATL 797


>gi|194214017|ref|XP_001915304.1| PREDICTED: RIMS binding protein 3 [Equus caballus]
          Length = 1654

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLW---SATTEANIVDVRQGYQQALALYKRF 588
             P         R   +L  +L+ +           AT E  + +V +  +Q L  + R 
Sbjct: 22  PSPAAAVLEEQRRELEKLRAELEAERARGRAERRRFATHERQLREVAERERQQLVDHLRS 81

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +  +++ +E+ +Q+ +   +    +   L+        Q+ Q+  +E
Sbjct: 82  KWEAQRGQEL-RQLQEEMLREREAEIRQLLRWKEAEMRQLQQLLHRE 127


>gi|195425598|ref|XP_002061083.1| GK10639 [Drosophila willistoni]
 gi|194157168|gb|EDW72069.1| GK10639 [Drosophila willistoni]
          Length = 1646

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 65/186 (34%), Gaps = 10/186 (5%)

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH-PAILQEQYQELADIRYDNNEL 515
                P+        +    S   +  EA  L  + +  P +  +     ++    +  +
Sbjct: 414 PPNANPAFSGFHLPFIGFTFSLNSTPIEAKKLSAICHEEPKLSNQILSSESNKDTTDKSM 473

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
             +         +Q     +E    L  +   E+ ++L  Q  +           +++  
Sbjct: 474 DLVQEKKLKTLTDQLMVSQQE-KGELTNKN-NEIFERLKIQDSELQDAITQRNIAMMEYS 531

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES-- 633
           +  ++   L  + + LSRQ  + E+++     K ++     L + L +      ++E   
Sbjct: 532 EVTEKLSELRNQKQKLSRQVRDKEEELDGAMQKNDS-----LRNELRKSDKTRRELELHI 586

Query: 634 QEAMIE 639
           +EA+IE
Sbjct: 587 EEAVIE 592


>gi|94270597|ref|ZP_01291778.1| tRNA synthetase, class II (G, H, P and S):Seryl-tRNA synthetase,
           class IIa [delta proteobacterium MLMS-1]
 gi|93450746|gb|EAT01810.1| tRNA synthetase, class II (G, H, P and S):Seryl-tRNA synthetase,
           class IIa [delta proteobacterium MLMS-1]
          Length = 424

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 9/92 (9%), Positives = 37/92 (40%)

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            +++    VR+           +    +  ++   L          ++++ ++I  +  +
Sbjct: 6   FIRENFALVREKTARRNLDTTALDQFPELDRRRRELLTELEEGRNHRKKVSQEIGALKKE 65

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           G+    +  +    ++  ++ ++E Q A+++G
Sbjct: 66  GDEAAASRRMEETRQLGERLKELEEQLAVVDG 97


>gi|88608872|ref|YP_506435.1| replicative DNA helicase [Neorickettsia sennetsu str. Miyayama]
 gi|88601041|gb|ABD46509.1| replicative DNA helicase [Neorickettsia sennetsu str. Miyayama]
          Length = 494

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 37/122 (30%), Gaps = 3/122 (2%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                     E  +L  L+ +     E  + ++   +     +K++  L     ++    
Sbjct: 30  SAELPNNIEAEQLILGALLTNNDACDEIEEIISSSSFYAPVHRKIFEVLLHLRSKELVAN 89

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  +   L        L  +  Q     +    +    V       Q L + ++  +L++
Sbjct: 90  PVTLKNYLES---SNELSAIGGQEYLLNIIEKASIVVDVSSLARVIQELYIRRQLIVLAQ 146

Query: 594 QK 595
           + 
Sbjct: 147 KM 148


>gi|15218369|ref|NP_173043.1| XH/XS domain-containing protein / XS zinc finger domain-containing
           protein [Arabidopsis thaliana]
 gi|6587797|gb|AAF18488.1|AC010924_1 Contains similarity to gb|AF136530 transcriptional regulator from
           Zea mays. ESTs gb|F14071, gb|Z26823, gb|AI998935 come
           from this gene [Arabidopsis thaliana]
 gi|332191261|gb|AEE29382.1| XH/XS domain-containing protein [Arabidopsis thaliana]
          Length = 634

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 69/229 (30%), Gaps = 14/229 (6%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K+ + R    + + D +    +        Y R      R  D+K    +       K +
Sbjct: 247 KNVQDRNTVLEELSDMIAMTNEDLNKVQYSYNRTAMSLQRVLDEKKNLHQAFADETKKMQ 306

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                      +   L +   +  E  +++ D+     +L+K    L     +++    +
Sbjct: 307 QMSL-----RHIQKILYDKEKLSNELDRKMRDLESRAKQLEK-HEALTEL--DRQKLDED 358

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +       +      ++  +            +    D               + L  + 
Sbjct: 359 KRKSDAMNKSLQLASREQKKADESVLRLVEEHQRQKEDALNKILLLEKQLDTKQTLEMEI 418

Query: 596 EEIEKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEAMI 638
           +E++ ++  +   G+ +      K   +   L +   ++  +ES  +++
Sbjct: 419 QELKGKLQVMKHLGDDDDEAVQKKMKEMNDELDDKKAELEGLESMNSVL 467


>gi|47217655|emb|CAG03052.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1069

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 93/295 (31%), Gaps = 23/295 (7%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +D  S      K  +     + +  + +        +  +   +  +    L        
Sbjct: 662 KDLMSATEKIRKEKWIDEKTKKIKEMTVKGLEPEIQKLISKHKQELKTLRTLHETELQRA 721

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------DQKGPSQRLMQSS 470
           D++    Y+Q   +  +QL ++   +        K     +        +   +RL +  
Sbjct: 722 DERAAQRYAQQCEELREQLQKEKEEQWQREQELAKHRYEKQLQEEEVSLQHQRRRLYKEL 781

Query: 471 LVKGKLSKKPSLREAALLLTL---------INHPAILQEQYQELADIRYDNN-ELQKL-- 518
             + +   + + R+   L  L         +   A+ +E  +   +    +  EL+ L  
Sbjct: 782 ADEKEQLAQLASRQRLELEDLRRQLEDNSALAGRALREELDKAREEQERRHQAELKALQE 841

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
              +     E+ Y   EE+     ER   E L++   +  +  +++   E +   V    
Sbjct: 842 RLDIDKQHWEENYKKKEEVWLLTRERELKEDLRRQRDKEIELAIFTLEEETSKDKVECER 901

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                + +       +  E+E+           EK   L     E+  ++ ++++
Sbjct: 902 AADNRVKRVRDKYEAELRELEQSERAA-----VEKHQELRRRQIEMEAELIRLQA 951


>gi|27904963|ref|NP_778089.1| replicative DNA helicase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|32129494|sp|Q89A52|DNAB_BUCBP RecName: Full=Replicative DNA helicase
 gi|27904361|gb|AAO27194.1| replicative DNA helicase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 463

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 10/111 (9%), Positives = 37/111 (33%)

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
           K   ++ + + + K          E ++L  L+          +++++  + +   Q ++
Sbjct: 2   KNVKKKNLDNQVEKLIELPNSLEAEQSILGGLMLDNEQWDYISEKISENDFFSLSHQLIF 61

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
             +     +        + + L ++G  E + +       +    +T    
Sbjct: 62  REMKYLLNKGYPIDLITLSESLEQKGKLEYIGRFAYLAELSKNVPSTANIT 112


>gi|296194817|ref|XP_002745119.1| PREDICTED: ankycorbin isoform 2 [Callithrix jacchus]
          Length = 972

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 100/278 (35%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    + +  +   +      + +  L   
Sbjct: 586 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEEMKEAMHRMIDELNKQVSE--LSQL 643

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 644 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQVTNVSRTKAEDALSEMKSQYSKVLN 703

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 704 ELTQLKQLVDAQKENSISITEHLQVITTLRTAAKEMEEKISSLKEHLAS-KEVEVAKLEK 762

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E +     +++  ++   ++     +  +  +
Sbjct: 763 QLLEEKAAMTDAMVSRSSYEKLQSSLESEVSALASKLKESVKEKEKVHSEVAQIRSEVSQ 822

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 823 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 860


>gi|242062216|ref|XP_002452397.1| hypothetical protein SORBIDRAFT_04g025040 [Sorghum bicolor]
 gi|241932228|gb|EES05373.1| hypothetical protein SORBIDRAFT_04g025040 [Sorghum bicolor]
          Length = 1756

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 65/217 (29%), Gaps = 18/217 (8%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            +  ++  L            R   ++A    +    +  + S   +        L E  
Sbjct: 529 ELDSQISWLASSLNQAKDDAVRLHDESAEMLARLAAHESKLVSMHEEIDRLTIILLEEKQ 588

Query: 487 LLLTLIN-HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
               L+N H  ++      +  +   +++  +L                      L ++G
Sbjct: 589 EKDILVNEHSELMSLYNAGVNKLALVSSQNNELLKAFVEFSDVTLEGSEPMDIAELVQQG 648

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
              + ++      ++            D  +  Q  L    +   L +   E E  I + 
Sbjct: 649 LRNIQQRTKSSPIES------------DSFEKLQALLYTLDQETTLYKMILE-EDMIGRS 695

Query: 606 TAKGEAEKTAI----LISILHEVHIQIHQIESQEAMI 638
              GE ++ A     L +    +  ++ ++E + A++
Sbjct: 696 ERTGELQRMAEEILVLKNEKVSLQKELERVEERSALL 732


>gi|198431970|ref|XP_002121885.1| PREDICTED: similar to epidermal growth factor receptor pathway
           substrate 15-like 1 [Ciona intestinalis]
          Length = 794

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 6/132 (4%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPE----EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
           EL  L   +     E++    E    E   R       EL   LDR              
Sbjct: 242 ELDALNQEIEELRREKESLTAEIQQKESAIRTASHDVQELQDTLDRNSSSLAQLECDKSE 301

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI--LHEVHIQ 627
               + +  QQ   L      + ++ +E  + I  + AK  A++ ++      L  V  +
Sbjct: 302 AHTRLDELDQQKNKLDSMLSDVKQKVQEETENIKSLRAKISAQEASVGQQEVELRRVRDE 361

Query: 628 IHQIESQEAMIE 639
           + +++++E  +E
Sbjct: 362 LAKMKNEETQLE 373


>gi|148747257|ref|NP_033093.2| ralA-binding protein 1 [Mus musculus]
 gi|312147310|ref|NP_001185878.1| ralA-binding protein 1 [Mus musculus]
 gi|44890489|gb|AAH67073.1| Ralbp1 protein [Mus musculus]
 gi|49903314|gb|AAH76636.1| Ralbp1 protein [Mus musculus]
          Length = 648

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 78/256 (30%), Gaps = 38/256 (14%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-----QAIRDRLQQLFQKYI---- 440
            +  +             L      IK++  R  +      + ++  ++ L ++      
Sbjct: 373 LKQVTRPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGIKDLSKEERLWEV 432

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                  +   + A+ ++ +    + + S   +    ++ +  E  + + L     IL E
Sbjct: 433 QRILTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVINILLAQENEILTE 492

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           Q + LA  ++       L   + S                  +     L  ++       
Sbjct: 493 QEELLAMEQF-------LRRQIAS-----------------EKEEIDRLRAEIAEIQSRQ 528

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
               + TE    D     +    L      L RQ EE+E +   +      E+       
Sbjct: 529 QHGRSETEEYSSDSESESEDEEELQLILEDLQRQNEELEIKNNHLNQAVHEER-----EA 583

Query: 621 LHEVHIQIHQIESQEA 636
           + E+ +Q+  ++ Q A
Sbjct: 584 IIELRVQLRLLQMQRA 599


>gi|229593820|ref|XP_001026666.3| Guanylate-binding protein, N-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|225567283|gb|EAS06421.3| Guanylate-binding protein, N-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 740

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 82/283 (28%), Gaps = 19/283 (6%)

Query: 358 DPDSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI- 415
           D  S      +   +    ++     +M  K  + +    T  +  E    L+     I 
Sbjct: 456 DIKSAWDNILEGEAQVSYEKAIQAYQEMKIKLFSSDEKTFTQKQIEENIKKLRQYATKIF 515

Query: 416 KDQK---LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           +D      +  Y    + +L+ L Q            +                      
Sbjct: 516 EDGISVKQQNEYYTDYKQKLELLIQNQEKMIEQENNTFADTGNQEILIEMHNDFNAQHFD 575

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
              + +     + A+L     +         E+    + +   ++L              
Sbjct: 576 LENIEEFAQKVKEAILRY---NQEGKGSNKMEIFSQYFPDILHEQLLRL---ATGNNHAQ 629

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             EE+  ++       L +QL    ++A L      A      +  +  +A Y++    +
Sbjct: 630 EIEELQAQIQ-----TLKQQLADTKKNAELQKTNAVAEYKKQVETLKSQIANYEQAEKDN 684

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILIS---ILHEVHIQIHQIE 632
           +   ++ K+ A    +   +    L +    L ++ IQ+ + +
Sbjct: 685 KSLMDVLKKKANNATEENQKLEQQLQAKEAELMKIQIQLKEAQ 727



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 88/236 (37%), Gaps = 16/236 (6%)

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            +K+  ++I + + +  Y +AI+   +   + + ++   + +   +    + ++  ++  
Sbjct: 456 DIKSAWDNILEGEAQVSYEKAIQAYQEMKIKLFSSDEKTFTQKQIEENIKKLRQYATKIF 515

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
                VK +       ++   L  LI +   + EQ     +  + +   Q++   + +DF
Sbjct: 516 EDGISVKQQNEYYTDYKQK--LELLIQNQEKMIEQ----ENNTFADTGNQEILIEMHNDF 569

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             Q +F  E I        F + +K+   +    G  S   E           + L    
Sbjct: 570 NAQ-HFDLENI------EEFAQKVKEAILRYNQEGKGSNKMEIFSQYFPDILHEQLLRLA 622

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV---HIQIHQIESQEAMIE 639
                +++ EE++ QI  +  +    K    +   + V     Q+  ++SQ A  E
Sbjct: 623 TGNNHAQEIEELQAQIQTLKQQLADTKKNAELQKTNAVAEYKKQVETLKSQIANYE 678


>gi|73998665|ref|XP_852131.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
           subunit 10 (theta) isoform 2 [Canis familiaris]
          Length = 1350

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|15672728|ref|NP_266902.1| replicative DNA helicase [Lactococcus lactis subsp. lactis Il1403]
 gi|281491242|ref|YP_003353222.1| replicative DNA helicase [Lactococcus lactis subsp. lactis KF147]
 gi|12723662|gb|AAK04844.1|AE006308_4 replicative DNA helicase [Lactococcus lactis subsp. lactis Il1403]
 gi|281374983|gb|ADA64501.1| Replicative DNA helicase [Lactococcus lactis subsp. lactis KF147]
 gi|326406296|gb|ADZ63367.1| replicative DNA helicase [Lactococcus lactis subsp. lactis CV56]
          Length = 455

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 7/152 (4%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K   +    E A+L  +      L E  + L+   +  N  + ++  +      ++    
Sbjct: 8   KAPPQDLAAEQAVLGAVFLDSERLVEIKEFLSSDDFYKNAHKIIFRTMEKLSDAREAIDV 67

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I   L  +G      +L+     A +    T          Y + +A     R L  +
Sbjct: 68  LTIRSHLENQG------ELEAIGGIAYIAELATATPTAANAAYYAKIVAEKSLLRQLINR 121

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
             E  ++  +  +  + +  A     L +V  
Sbjct: 122 LTESVEKAYEQDSPAD-DILAQAEKSLIDVQQ 152


>gi|47225272|emb|CAG09772.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 860

 Score = 40.6 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 72/218 (33%), Gaps = 17/218 (7%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + + + L    +             K + ++ ++KG S+    SS      +K    ++ 
Sbjct: 169 RRLAEELADTLRLVKELQDCETLQRKAHTKNNEEKGESKPDTVSSFDYDAPAKISVGQDQ 228

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            LL +    PA+  +Q      ++    E   L S L     E +  L +   QR  E  
Sbjct: 229 GLLHSAEKAPAVTTDQASLFEGMK---KENAALRSELRDARDELQKRLDDLESQRRAEAE 285

Query: 546 FGELLKQLDRQVRDAGLWSATTEAN-IVDVRQGYQQALALYKRFRLLSRQKE-------- 596
               +KQL R++          + +    V +   +A  L +    L  + +        
Sbjct: 286 ARTRVKQLSRKLASQSTEKKEQDKDWRDKVEREKAEAEKLRRTITALEMEVKKGREADDG 345

Query: 597 -----EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                + + +  +       E    L + L EV  Q+ 
Sbjct: 346 NESQEDKKYKALEDRESEMVELNFQLKNQLSEVKAQLA 383


>gi|332229996|ref|XP_003264172.1| PREDICTED: LOW QUALITY PROTEIN: golgin subfamily A member 1-like
           [Nomascus leucogenys]
          Length = 768

 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 31/259 (11%), Positives = 86/259 (33%), Gaps = 31/259 (11%)

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                ++     + D   +    Q I+++L+   +K+  + S   ++ ++N   +  +  
Sbjct: 62  RRNEQIRKLEARLSDYAEQVRNLQKIKEKLEIALEKH--QDSSMRKFQEQNETFQANRAK 119

Query: 463 SQRLMQSSLVKGKLSKKPSL----REAALLLTLINHPA-----ILQEQYQELADIRYDNN 513
               +  +L +        +    +E ++L   +         + Q + +      +   
Sbjct: 120 MAEGLALALARKDQEWSEKMDQLEKEKSILTAQLQEMKNQSMNLFQRRDELDELEGFQQQ 179

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           EL K+   L            E        R      ++L    + +   S   E     
Sbjct: 180 ELSKIKHMLLKKEESLGKMEQEL---EARTRELSRTQEELMNSSQMSSDLSQKLEELQRH 236

Query: 574 ---VRQGYQQALALYK----RFRLLSRQKEEIEKQIAQVTAK-----GEAEKTAILISIL 621
              + +     +A       +   L ++++E++  I Q++        E ++   +I+ L
Sbjct: 237 YSTLEEQRDHVIASKTGAESKITALEQKEQELQALIQQLSIDLQKVTAETQEKEDIITHL 296

Query: 622 HE----VHIQIHQ-IESQE 635
            E    +  ++ Q +  +E
Sbjct: 297 QEKVASLEKRLEQNLSGEE 315


>gi|332212109|ref|XP_003255164.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A
           [Nomascus leucogenys]
          Length = 1364

 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|329117065|ref|ZP_08245782.1| chromosome segregation protein SMC [Streptococcus parauberis NCFD
           2020]
 gi|326907470|gb|EGE54384.1| chromosome segregation protein SMC [Streptococcus parauberis NCFD
           2020]
          Length = 1181

 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 72/214 (33%), Gaps = 15/214 (7%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           L +     I++      +  K    R     +  +++    K +   K +  +  L    
Sbjct: 133 LGKDSFSIISQGRVEEIFNSKAEERRAIFEEAAGVLKYKTRKKETESKLNQTQDNLDRL- 191

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF---GE 548
                I+ E   ++  +       ++    L  +   Q           L +       E
Sbjct: 192 ---DDIVYELETQITPLEKQAKTAKEF--ILLDEDRSQLQLDILVSDIALDKVLLTTKEE 246

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDV---RQGYQQALALYK-RFRLLSRQKEEIEKQIA- 603
            L  + + +          E     +   RQ   Q + L + +   L++   ++E+QI  
Sbjct: 247 ELSAIKQDMTAYHQHREKLENENQSLKTKRQTVAQEMDLKQGQLLELTKALSDLERQIEL 306

Query: 604 -QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            ++    ++EK     S + ++  ++  +++QE+
Sbjct: 307 IKLEKSQKSEKKEEASSRIKQLKEELLTLQNQES 340


>gi|323451148|gb|EGB07026.1| hypothetical protein AURANDRAFT_59154 [Aureococcus anophagefferens]
          Length = 691

 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 69/237 (29%), Gaps = 21/237 (8%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           ++  +    +   D + +L  +     SG G         +      +        + + 
Sbjct: 347 NEDPKDAMLREFTDEIARLKAQLAGGGSGGGAGGGYGPGVKIGISEEELQRVHEEAEAEK 406

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADI-------RYDNNELQKLWSFLF----SD 525
           S+     E  L   L       +E+ +  AD+       +  + + + L + L       
Sbjct: 407 SRIRERAERDLAEILERQAETEEEREKLRADLVRQELERKRASEKKRSLAAKLKGMEAKL 466

Query: 526 FVEQKYFLPEEIHQRL----------CERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
               +        +             E     L ++L ++       S    +   +V 
Sbjct: 467 LKGGQMLDKAATQEAELRKAERELVDKEEAERALAQELGKRDEVREDLSEKYSSIEEEVD 526

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +  ++   L ++      +  +++ +  +       +    +  +  ++ ++   +E
Sbjct: 527 KKTRKLEKLVRKVNEAEAEIADLQGEFQREREDLCEDMLDTIRQLARQIKLKEMVLE 583


>gi|307170889|gb|EFN63000.1| General vesicular transport factor p115 [Camponotus floridanus]
          Length = 839

 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 52/158 (32%), Gaps = 19/158 (12%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            +       +   ++ +         ++S  ++      +   + L +  F  LLK L+ 
Sbjct: 572 KVCNLIENRIGVEKFQDAIGGIARHEIYSRTLKHPQPSAKNPSELLLDHEFCRLLKSLEG 631

Query: 556 QVRDAGLWSATTEANIVDV-----------------RQGYQQALALYKRFRLLSRQKEEI 598
            V  + + +     N   +                 R+   Q   L +   +L ++K+E+
Sbjct: 632 VVIKSIIDANNEHQNRSQLSMSLSDNTLVLQYKDLIREQDVQIQKLNQANDVLLKEKQEL 691

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           E Q+ ++ +     +   L+  L      I   +   A
Sbjct: 692 EAQLQELRSTVSHLRDQNLV--LRAAQTNIGDGKETIA 727


>gi|297685341|ref|XP_002820251.1| PREDICTED: golgin subfamily A member 1-like [Pongo abelii]
          Length = 559

 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 80/250 (32%), Gaps = 23/250 (9%)

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                ++     + D   +    Q I+++L+   +K+  + S   ++ ++N   +  +  
Sbjct: 62  RRNEQIRKLEARLSDYAEQVRNLQKIKEKLEIALEKH--QDSSMRKFQEQNETFQANRAK 119

Query: 463 SQRLMQSSLVKGKLSKKPSL----REAALLLTLINHPA-----ILQEQYQELADIRYDNN 513
               +  +L +        +    +E  +L   +         + Q + +      +   
Sbjct: 120 MAEGLALALARKDQEWSEKMDQLEKEKNILTAQLQEMKNQSMNLFQRRDEMDELEGFQQQ 179

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA---- 569
           EL K+   L            E        R      ++L    + +   S   E     
Sbjct: 180 ELSKIKHMLLKKEESLGKMEQEL---EARTRELSRTQEELMNSNQMSSDLSQKLEELQRH 236

Query: 570 --NIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
              + + R       +    +   L ++++E++  I Q++   + +  A     L +   
Sbjct: 237 YSTLEEQRDHVIASKIGAESKITALEQKEQELQALIQQLSIDLQKKTLAE--QNLEDTRQ 294

Query: 627 QIHQIESQEA 636
           Q+    S +A
Sbjct: 295 QLLAARSSQA 304


>gi|260583708|ref|ZP_05851456.1| cell division protein Smc [Granulicatella elegans ATCC 700633]
 gi|260158334|gb|EEW93402.1| cell division protein Smc [Granulicatella elegans ATCC 700633]
          Length = 1186

 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 74/236 (31%), Gaps = 31/236 (13%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y  AI+   Q   ++ + +                     ++L  +     +L +  
Sbjct: 287 QALYVDAIQKMEQLDGERKVYQQRQEFANRTNEENQLALVEVIRQLESTEQTVAELERAV 346

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQK-LWSFLFSDFVE----------- 528
           +++E  L            +  +EL  +   N E QK L S       E           
Sbjct: 347 AIKEVELNGIEAQ----WSKLVEELEQLSQGNEERQKQLQSDYIEQLQEISKLTNQEKHL 402

Query: 529 -------QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
                  Q         Q L E    +L +++ + V      +    +   D+    QQA
Sbjct: 403 ERSMEQNQNQHDKLLEKQELFEEQSKQLDQKIAQLVEKEENLAQQANSKQEDLNSYRQQA 462

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTA--------KGEAEKTAILISILHEVHIQIH 629
            +L +  + +  QK++IE+Q+ Q  A          +       +  + +   QI 
Sbjct: 463 DSLRQERQTMQEQKQKIERQLQQTQANYHSLKQVSEDYAGYYQGVREILKQKKQIA 518


>gi|226467812|emb|CAX69782.1| Rab GTPase-binding effector protein 1 [Schistosoma japonicum]
          Length = 770

 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 66/222 (29%), Gaps = 21/222 (9%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +  +  RL  L   Y        R        R     + ++++S        +  +  
Sbjct: 424 LANQLAQRLDGLLLNYKAYRETTEREISNLLVERKIADTNLQIIRSHYDSLVGRRSQAAA 483

Query: 484 EAALLLTLINHPAILQEQYQELADIRY----DNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E      L   P  L  +  EL  +      +N   ++    L     ++     E++  
Sbjct: 484 E------LSRQPIQLPNEKDELEHLALKLYEENLSFREARDHLEERLNKESEAHKEQLAN 537

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              +         L          +  +        +       L +++     + +  +
Sbjct: 538 E-QQERLNFESSALQELEDARQRLANLSNIATERDNESI-----LRQKY---EEELKSSK 588

Query: 600 KQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQEAMIE 639
            ++ +V AK E  +T        + ++  QI ++++    IE
Sbjct: 589 SKLNEVQAKYELTETSLIEAQKRIVDLQDQIVRLQNDLDNIE 630


>gi|187607171|ref|NP_001120598.1| cingulin [Xenopus (Silurana) tropicalis]
 gi|229553906|sp|B1WB65|CING_XENTR RecName: Full=Cingulin
 gi|171846400|gb|AAI61633.1| LOC100145755 protein [Xenopus (Silurana) tropicalis]
          Length = 1251

 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 78/222 (35%), Gaps = 24/222 (10%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +A+ D+L    ++     +  G    K A  ++ +     L +   ++ K  +    ++
Sbjct: 411 LRAMEDKLMDSKEELSHLRAKGGTSPDKLALMKELEEVQDELDEVLQIRQKQEELLRQKD 470

Query: 485 AALLLT-------LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             L          + NH   L    ++  +      ++Q+L   + +   +Q     E  
Sbjct: 471 RELTALKGALKDEVANHDKDLDRVREQYQN------DVQQLRKNMENVSQDQLSLETE-- 522

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            ++   +    L ++L+    +   W    + N  ++R   Q+ L +         + +E
Sbjct: 523 -RQKINQVVRNLQRELEESSDEINQWKEMFQKNKEELRSTKQELLQMKMEKEESEDELKE 581

Query: 598 -------IEKQIAQVTA-KGEAEKTAILISILHEVHIQIHQI 631
                  ++ ++ Q      +  + A +   L  V  Q+ Q+
Sbjct: 582 TKDRFSLLQSELEQAKKGSVDPGELASVRKELQRVQDQLKQL 623



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 105/337 (31%), Gaps = 36/337 (10%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
                       L          ++ V      D     +     + ++L +E+      
Sbjct: 468 QKDRELTALKGALKDEVANHDKDLDRVREQYQNDVQQLRKNMENVSQDQLSLETERQKIN 527

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKD--------QKLRYYYSQAIRD---RLQ 433
              R  +     + DE  + +   +     ++         +  +      +++   R  
Sbjct: 528 QVVRNLQRELEESSDEINQWKEMFQKNKEELRSTKQELLQMKMEKEESEDELKETKDRFS 587

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLTL 491
            L  +      G     +  +  ++ +    +L Q S+ K K+ +    RE  L  L   
Sbjct: 588 LLQSELEQAKKGSVDPGELASVRKELQRVQDQLKQLSVDKQKVEENLHQRERELSALKGA 647

Query: 492 INHP---------AILQEQYQELADIRYDNNEL----QKLWSFLFSDFVEQKYFLPEEIH 538
           +             + ++   E+   + DN  L    Q++   L    +E++        
Sbjct: 648 LKEEVAGRGRETERLREQLQSEVVQFKKDNENLGRESQRIQDQLKQVLLEKQRHEEAVHQ 707

Query: 539 QRLCERGFGELL-KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSR 593
           +          L  ++  + R+A    A  E + +  ++ Y++ + + KR       L R
Sbjct: 708 RERELSALKGALKDEVSGRDREAERLRAQFEQDAMQTKRSYEELVKINKRLESEKVDLER 767

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            ++ IE  + +   + +      L   +  +  Q+ +
Sbjct: 768 VRQVIENNLQESREENDD-----LRRKILGLEAQLKE 799



 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/282 (10%), Positives = 90/282 (31%), Gaps = 18/282 (6%)

Query: 365  CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
               + A   L   SL   ++    + E +  +   +        K  ++   D+  R   
Sbjct: 851  NKLEEAQRSLKRLSLEYEELQECYQEEMKQKDHLKKTKNELEEQKRLLDKSMDKLTRE-- 908

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
               + +  +   Q   ++   +    ++      ++   +              +  +++
Sbjct: 909  LDNMSNESRGSLQVLQSQLEEFREKSRREIGEAQKQAKEKTAEAERHQFNSSRMQEEVQK 968

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
               L   +    + +E  +   D +     LQ L         +++         ++ E 
Sbjct: 969  ---LKLALQELQVEKETVEL--DKQMVTQRLQNLEQ---DTESKKRVQDDRSRQVKVLED 1020

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-------FRLLSRQKEE 597
                +  +LD +     L S     +   + Q   + +    R          L RQ ++
Sbjct: 1021 KLKRMEAELDEEKNTVELLSDRINRSREQMEQQRAELMQERARGQDLECDKISLERQNKD 1080

Query: 598  IEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMI 638
            ++ ++A +  + +     + L + L ++  ++   E ++A +
Sbjct: 1081 LKGRLANMEGQQKPSVNVSHLEAKLQDIQERLQSEEREKATL 1122


>gi|154502674|ref|ZP_02039734.1| hypothetical protein RUMGNA_00487 [Ruminococcus gnavus ATCC 29149]
 gi|153796557|gb|EDN78977.1| hypothetical protein RUMGNA_00487 [Ruminococcus gnavus ATCC 29149]
          Length = 323

 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 52  SFHCNDSKGFYYCFSCHVKG-DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK 110
           SF  N+    ++  S ++ G   L FL  + G  + E+V+ L     V +P  +P   KK
Sbjct: 45  SFKINEITSKWHWKSRNIGGMSALRFLMQVDGMGYTEAVKILCEQTPVYVPRAEPAPRKK 104


>gi|126337027|ref|XP_001381047.1| PREDICTED: similar to Cxorf5 (71-7A) protein [Monodelphis
           domestica]
          Length = 960

 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 91/281 (32%), Gaps = 15/281 (5%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     A E  I     L D+   R  E       +     +   +     +++   R  
Sbjct: 375 KHQEIEAKEIYIQRQDLLKDIEMVRSREAELKQRMEAFELTQKLQEEKYKTLEESLRRRE 434

Query: 424 Y-SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              + + D  +Q  +  + ++    +       +R  +   +   ++  ++ + +   S 
Sbjct: 435 LNVRNMEDAYEQRLKNELLKYQLELKEEYITRSNRVLEEEQKNKEKAMRLQEEANAINSR 494

Query: 483 REAALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           RE   L   I+H   L+ +   L   I     + Q L   +     +      + +  + 
Sbjct: 495 REE--LREAISHGKNLELELDSLKEQILLVTKQNQSLSEKIKDT-TDYLLLKEDRLALQA 551

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLSRQKEEIEK 600
             +   + ++++  +       S       + +++  +      K   +    +K+ +EK
Sbjct: 552 QNKLLKQQMEEIQNENMHLQRKSTQPSPEFIALQKESKMTENARKLEQKAFETEKQSLEK 611

Query: 601 QIAQ--------VTAKGEAE-KTAILISILHEVHIQIHQIE 632
           ++               + E  T  L   + ++ +Q+ Q +
Sbjct: 612 RLQTEVERCSLLKNQILDYEVSTRRLNMQIDDLKLQLRQTQ 652


>gi|71993549|ref|NP_741024.3| Nuclear Pore complex Protein family member (npp-21) [Caenorhabditis
           elegans]
 gi|52839827|gb|AAU87818.1| Hypothetical protein R07G3.3a [Caenorhabditis elegans]
          Length = 1982

 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 80/247 (32%), Gaps = 14/247 (5%)

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
             +  + +  + + ++  +   +D+  R   +    D ++   ++     +   +  +  
Sbjct: 284 FKDQLEAQENVLVEVRKVLQEHQDEMERENLAH--ADAIKHRDEELAQTRAELVKVTEMM 341

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-AALLLTLINHPAILQEQYQELADIRYDN 512
               D K        S L          LR   +L   ++ H         +L ++  DN
Sbjct: 342 KSMSDVKLNVSEEELSELAPAAAETVRYLRGGQSLSSLVLEH----ARVRGKLTEVEEDN 397

Query: 513 NELQKLWSFLFSDFVEQKYFLPEE--IHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
             L+     L     + K  +  +  +   L ++      KQLD    +     +  +  
Sbjct: 398 VNLRNTLEELLETIDQNKPQMISQKMVTDELFDKN-NRFEKQLDLAESERRQLLSQRDTA 456

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEAEKTAILISILHEVHI 626
             D+     +     + +  +S++  E+    E+Q          +    L   + ++  
Sbjct: 457 QRDLAYVRAELEKYQRDYEFVSKRNAELLYAVERQSRMQDPNWSEQADEQLFQNIVQLQR 516

Query: 627 QIHQIES 633
           +  ++ES
Sbjct: 517 RNVELES 523


>gi|55742753|ref|NP_001007002.1| intraflagellar transport protein 74 homolog [Rattus norvegicus]
 gi|53734513|gb|AAH83611.1| Intraflagellar transport 74 homolog (Chlamydomonas) [Rattus
           norvegicus]
 gi|149044499|gb|EDL97758.1| intraflagellar transport 74 homolog (Chlamydomonas) [Rattus
           norvegicus]
          Length = 600

 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 97/293 (33%), Gaps = 18/293 (6%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE--RAELEIHLKNCINHIKDQK 419
             +   K+ +  L+   +  +     +  +       +       E   +     IKD +
Sbjct: 88  QRQILDKSYYLGLLRSKISELTTEINKLQKEIEMYNQENSVYLSYEKRAETLAVEIKDFQ 147

Query: 420 LRYYYSQAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +      + D+L    +  + + +++       +  +  D     ++  +  +   +  
Sbjct: 148 GQLADYNMLVDKLNTNTEMEEVMNDYNMLKAQNDRETQSMDVIFTERQAKEKQIRSVEEE 207

Query: 478 KKPSLREAA-LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            +   + A  ++  +   P    +  +          EL  L   L S  ++++    E 
Sbjct: 208 VEQEKQAADGIIKNM--SPEKQVKYIEMKTTNEKLLQELDTLQQQLDSLNIKKESLETEI 265

Query: 537 IHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            H ++ +      E L +L+           +  + + +  +  +Q     +    + RQ
Sbjct: 266 AHSQVKQEAVLLYEKLYELESHRDQMIAEDKSMGSPMEERERLLKQVKEDNQEIASMERQ 325

Query: 595 KEEIEKQIAQVTAK-----GEAEKTA-ILISILHEVHIQIHQIESQEAMIEGF 641
             +I+++I Q + +      + E+    +     E+  +   ++   A IE F
Sbjct: 326 LTDIKEKINQFSEEIRQLDMDLEEHQGEMNQKYKELKKREENMD---AFIETF 375


>gi|189036|gb|AAA36349.1| nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
          Length = 1247

 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 89/276 (32%), Gaps = 28/276 (10%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                   +   EKL ++     +     E E        ++ ELE    +    +++++
Sbjct: 155 MEMETLQSQLMAEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEE 214

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            RY + QA + ++QQ  Q+   +        +K    +       + ++   +  +    
Sbjct: 215 ERYQHLQAEKKKMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEEQIILEDQNC 274

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +E  LL         + E    L +    +  L KL +                   
Sbjct: 275 KLAKEKKLLE------DRIAEFTTNLTEEEEKSKSLAKLKNK------------------ 310

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              E    +L ++L R+ +       T      D      Q   L  +   L  Q  + E
Sbjct: 311 --HEAMITDLEERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKE 368

Query: 600 KQIAQVTAKGEAEKTAILIS--ILHEVHIQIHQIES 633
           +++    A+ E E     ++   + E+  QI +++ 
Sbjct: 369 EELQAALARVEEEAAQKNMALKKIRELESQISELQE 404


>gi|74197002|dbj|BAE35056.1| unnamed protein product [Mus musculus]
          Length = 648

 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 78/256 (30%), Gaps = 38/256 (14%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-----QAIRDRLQQLFQKYI---- 440
            +  +             L      IK++  R  +      + ++  ++ L ++      
Sbjct: 373 LKQVTRPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGIKDLSKEERLWEV 432

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                  +   + A+ ++ +    + + S   +    ++ +  E  + + L     IL E
Sbjct: 433 QRILTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVINILLAQENEILTE 492

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           Q + LA  ++       L   + S                  +     L  ++       
Sbjct: 493 QEELLAMEQF-------LRRQIAS-----------------EKEEIDRLRAEIAEIQSRQ 528

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
               + TE    D     +    L      L RQ EE+E +   +      E+       
Sbjct: 529 QHGRSETEEYSSDSESESEDEEELQLILEDLQRQNEELEIKNNHLNQAVHEER-----EA 583

Query: 621 LHEVHIQIHQIESQEA 636
           + E+ +Q+  ++ Q A
Sbjct: 584 IIELRVQLRLLQMQRA 599


>gi|21752271|dbj|BAC04155.1| unnamed protein product [Homo sapiens]
          Length = 497

 Score = 40.6 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 156 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 213

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++     S      ++    + ++  + + +Q S+ + K   
Sbjct: 214 AEYTILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDC 273

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   +  L           Q+L D       L+K +         +     +  
Sbjct: 274 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 330

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 331 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 387

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+   +  A  E +        L ++  +++++  QE
Sbjct: 388 LEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 425


>gi|325280827|ref|YP_004253369.1| ATP-dependent chaperone ClpB [Odoribacter splanchnicus DSM 20712]
 gi|324312636|gb|ADY33189.1| ATP-dependent chaperone ClpB [Odoribacter splanchnicus DSM 20712]
          Length = 863

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 20/220 (9%), Positives = 58/220 (26%), Gaps = 35/220 (15%)

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           +  +     +   I   +     +   + +   +        R     +    Q    + 
Sbjct: 265 LASEGEIILFIDEIHTLVGAGKSEGAMDAANILKPALARGDLRAIGATTLNEYQKYFEQD 324

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K        E      +I+ P ++                   +   L   +        
Sbjct: 325 KA------LERRFQKVMIDEPDVMSAI---------------SIMRGLKEKYENHHKVRI 363

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            +            ++  ++   R         +  I  V +    A  L      +  +
Sbjct: 364 TD----------DAIIASVELSHRYISDRFL-PDKAIDLVDEA---AAKLRLEMNSVPEE 409

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +E++++I Q+  + EA K       L ++  ++  +  +
Sbjct: 410 IDELDRKIQQLEIEKEALKREGTSKKLSDIQKELADLNDE 449


>gi|322515821|ref|ZP_08068765.1| DNA replication protein DnaC [Streptococcus vestibularis ATCC
           49124]
 gi|322125707|gb|EFX97029.1| DNA replication protein DnaC [Streptococcus vestibularis ATCC
           49124]
          Length = 453

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 41/143 (28%), Gaps = 6/143 (4%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           S   + ++     + E ++L  +  +P  L    + +    +     + ++  + +    
Sbjct: 2   SEAQELRVQPHDLVAEQSVLGAIFINPEKLITVREFIEADDFYKYSHRVIFKAMVTLSDR 61

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                   +   L ++        L      + L             + Y + +A     
Sbjct: 62  NDAIDATTVRTILDDQ------DDLQNIGGISYLVDLVNSVPTSANAEYYAKIVAEKAML 115

Query: 589 RLLSRQKEEIEKQIAQVTAKGEA 611
           R +  +  E   Q  +   + + 
Sbjct: 116 RRIINRLTETVNQAYEGATESDE 138


>gi|319760176|ref|YP_004124114.1| replicative DNA helicase [Candidatus Blochmannia vafer str. BVAF]
 gi|318038890|gb|ADV33440.1| replicative DNA helicase [Candidatus Blochmannia vafer str. BVAF]
          Length = 458

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 28/76 (36%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K+       E ++L +L+      +    ++    + N   + ++S +       K    
Sbjct: 14  KILPYSLEAEQSVLGSLMLDNEQWEYISTQITSNDFYNPAHRIIFSEIQRLLEINKPIDL 73

Query: 535 EEIHQRLCERGFGELL 550
             + + L  RG  EL+
Sbjct: 74  ITLSESLEIRGKLELV 89


>gi|300933415|ref|ZP_07148671.1| excinuclease ABC subunit B [Corynebacterium resistens DSM 45100]
          Length = 707

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/109 (9%), Positives = 43/109 (39%), Gaps = 3/109 (2%)

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
            + ++    P+ + +++ +    ++ +   ++  +    S +++A +     G  Q  A 
Sbjct: 599 AYNKEHGIDPQPLRKKIAD-ILDQVAELEGKEAAEDVAASLSSDAAV--ASPGIDQKQAG 655

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                 L +   ++ +Q+     + + E    L   + ++  ++  ++ 
Sbjct: 656 EMARPQLEKLISDLTEQMKAAARELKFELAGRLRDEIQDLKKELRGMKE 704


>gi|297686607|ref|XP_002820836.1| PREDICTED: LOW QUALITY PROTEIN: disks large homolog 5-like [Pongo
           abelii]
          Length = 1764

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 20/192 (10%), Positives = 60/192 (31%), Gaps = 7/192 (3%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            ++ ++      +E+        +     D+      L +S L      KK +  E   L
Sbjct: 263 SEKYREERDAVYSEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAANEEMEAL 322

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              I     +           +   + + L   L     E       +  +    +   +
Sbjct: 323 RQ-IKDTVTMDAGRANKEVESFR-KQCKALCQELKEALQEA---DVAKCRRDWAFQERDK 377

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           ++ + D             +  + ++ +  +      K+   +SR+ +E+++Q+   +  
Sbjct: 378 IVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKNDVSRELKELKEQME--SQL 435

Query: 609 GEAEKTAILISI 620
            +  +   L++ 
Sbjct: 436 EKEARFRQLMAH 447


>gi|281343584|gb|EFB19168.1| hypothetical protein PANDA_000609 [Ailuropoda melanoleuca]
          Length = 1688

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 76/230 (33%), Gaps = 17/230 (7%)

Query: 425 SQAIRDRLQQL------FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            Q ++++L+ L       Q+   + +       K  + +++       ++      +   
Sbjct: 646 VQELQEKLRALERESTKTQELNRQQNAQLEQLAKELQLKEEAQADLERLRKETAPLREEL 705

Query: 479 KPSLRE----AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
               +E       L   + H + ++++  ELA +     +L++    L     +      
Sbjct: 706 AAKGQEATQLRRQLREALAHLSSVEQELAELAQLSQHVGDLEEQKKQLIR--DKDHLSQK 763

Query: 535 EEIHQRLCERGFGELLKQLDRQVR----DAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             + +RL  +   +L    ++       D+ L     +           Q      R   
Sbjct: 764 VGLLERLARQPGPDLPTAGEKPEARGPPDSTLRPVFKKPEEEQRSPQEGQTGDAQMRGSG 823

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
              + ++  +++ +   +   E   +L   L  +      ++ +EA I+G
Sbjct: 824 QEEKLQQANREL-EKELQNVLELNHLLEGKLQALQADYQALQQREAAIQG 872


>gi|226467814|emb|CAX69783.1| Rab GTPase-binding effector protein 1 [Schistosoma japonicum]
          Length = 770

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 66/222 (29%), Gaps = 21/222 (9%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +  +  RL  L   Y        R        R     + ++++S        +  +  
Sbjct: 424 LANQLAQRLDGLLLNYKAYRETTEREISNLLVERKIADTNLQIIRSHYDSLVGRRSQAAA 483

Query: 484 EAALLLTLINHPAILQEQYQELADIRY----DNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E      L   P  L  +  EL  +      +N   ++    L     ++     E++  
Sbjct: 484 E------LSRQPIQLPNEKDELEHLALKLYEENLSFREARDHLEERLNKESEAHKEQLAN 537

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              +         L          +  +        +       L +++     + +  +
Sbjct: 538 E-QQERLNFESSALQELEDARQRLANLSNIATERDNESI-----LRQKY---EEELKSSK 588

Query: 600 KQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQEAMIE 639
            ++ +V AK E  +T        + ++  QI ++++    IE
Sbjct: 589 SKLNEVQAKYELTETSLIEAQKRIVDLQDQIVRLQNDLDNIE 630


>gi|225557620|gb|EEH05906.1| p150 dynactin NUDM [Ajellomyces capsulatus G186AR]
          Length = 1368

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 78/256 (30%), Gaps = 35/256 (13%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +  L+    + ++ +L+ + +K + +           +     +   Q+L      + + 
Sbjct: 287 NPVLKE--VEDLKTKLRVMEKKRVEDREKLKSLETLRSERDKFEVIIQKLQTKYQPQQQE 344

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +   +    +  +     +  E    +     D    +++   + ++F   K    E 
Sbjct: 345 ITQLRKQLKDAMARVEEAERLQAEHESIVEMATLDREMAEEMCEAIKAEFEALKEKSEEL 404

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY--------QQALALYKRF 588
             +    R   + L Q+      +       E     +R+          QQ   L  + 
Sbjct: 405 ELEVEVLREENQELGQVMSPEEKSSQGWLQMERTNERLREALIRLRDMTQQQETDLRNQI 464

Query: 589 RLLSRQKEE------------------------IEKQIAQVTAKGEAEKTAILISILHEV 624
           + L  + E+                        +++Q+  + A+   E+ A       E 
Sbjct: 465 KELEGELEDFAAIKANYEIAKEQLLITEANMEDLKQQVEALGAEDMIEELAEKNMQYQEQ 524

Query: 625 HIQIHQ-IESQEAMIE 639
             ++   IE  E++ E
Sbjct: 525 VNELKAVIEDLESLKE 540


>gi|124514812|gb|EAY56324.1| putative OmpA family protein [Leptospirillum rubarum]
          Length = 265

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +   L +    +   +   +  DA L  A         ++     + L  +   ++ QKE
Sbjct: 40  LQNALNDENLKQAAPEQLDKASDA-LKHARELLKNGAPKKDVDHYVYLATQRIKIAEQKE 98

Query: 597 ---EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
              E++K+I + +A  +        + +  +  ++ +++++E
Sbjct: 99  KAAELQKEIKKASAHRDQIMLEANQAKIEHLKRELLKMKAKE 140


>gi|121713140|ref|XP_001274181.1| myosin type II heavy chain, putative [Aspergillus clavatus NRRL 1]
 gi|119402334|gb|EAW12755.1| myosin type II heavy chain, putative [Aspergillus clavatus NRRL 1]
          Length = 2406

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 77/223 (34%), Gaps = 18/223 (8%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSL-VKGKLS 477
            R      + ++  QL +  +T      R    ++ +  R  +  + R+++ +  V   + 
Sbjct: 852  RAGVLAELEEKRDQLIRTIMTRFQSAARGFVQRRISNKRLYRAEATRIIRHNFHVYLDMK 911

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADI-RYDNNELQKLWS-FLFSDFVEQKYFLPE 535
            + P  R  + +  L+       E  +    I   ++   Q +       +   +      
Sbjct: 912  RNPWWRLFSRMKPLLGETRTANEVKRRDEKIKELESKMQQDIVERQRLDEERRRTEVEIH 971

Query: 536  EIHQRLCER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            +I Q L           E+ K+L  +  +     A   A+   +       +A  K+   
Sbjct: 972  KIQQILESERALALDKEEIFKRLQLREIELSEKLAGAIADQESLDDQLDGLIAAKKKTD- 1030

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                 E++  +I Q+   G  E    L S   E+  ++ +++S
Sbjct: 1031 -----EQLSHRITQLEQAG--EIIQRLESEKQELQARLEELDS 1066


>gi|118084129|ref|XP_416831.2| PREDICTED: similar to Cxorf5 (71-7A) protein [Gallus gallus]
          Length = 1012

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 91/281 (32%), Gaps = 13/281 (4%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     A E        L D+   R  E       +     +   +     I D   R  
Sbjct: 268 KQQEIEAKEVYAQRQSLLKDIEVMRTREAELKQRIEAFEITQKLQEEKNKSIDDALRRRE 327

Query: 424 Y-SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              + I +   Q  +  + ++    +       ++  +   +   ++ L++ +     S 
Sbjct: 328 VAVKNIEETYDQKLKTELLKYQLELKEEYIARTNKVTEDEKKNKEKAMLLREEAVAVNSK 387

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           +E  L   +     +  +     A +   N + Q L   L     +      E++  ++ 
Sbjct: 388 KE-ELKQAVSRTKELELDLESVKAQVLLVNKQNQLLTEKLKE-VSDYPLLKEEKLELQVQ 445

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--------RFRLLSRQ 594
            +   + L +   + +      +   A  +  +   ++     +          + L +Q
Sbjct: 446 NKLLRQQLDETRTENQHLRDKLSQPSAEHLACQAELRKVEHSRRLVMDEFESHKQFLEKQ 505

Query: 595 KE-EIEKQIAQVTAKGEAEKTAILIS-ILHEVHIQIHQIES 633
            + E+E+     T   ++E T   ++  + ++ +Q+ Q ++
Sbjct: 506 LQSEVERSAQLKTQLLDSEATVRKLNVQVEDLKLQLKQTQA 546


>gi|72161122|ref|YP_288779.1| hypothetical protein Tfu_0718 [Thermobifida fusca YX]
 gi|71914854|gb|AAZ54756.1| conserved hypothetical protein [Thermobifida fusca YX]
          Length = 578

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            L  + R + ++  E+E+QI +     E      +     EV+ +I ++ ++EA+
Sbjct: 224 ELRGQIRTVQQRVNELEQQINEFKVVPE---YEEIQREADEVNRRIRKLRNEEAV 275


>gi|7506441|pir||T16703 hypothetical protein R07G3.3 - Caenorhabditis elegans
          Length = 1974

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 80/247 (32%), Gaps = 14/247 (5%)

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
             +  + +  + + ++  +   +D+  R   +    D ++   ++     +   +  +  
Sbjct: 284 FKDQLEAQENVLVEVRKVLQEHQDEMERENLAH--ADAIKHRDEELAQTRAELVKVTEMM 341

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-AALLLTLINHPAILQEQYQELADIRYDN 512
               D K        S L          LR   +L   ++ H         +L ++  DN
Sbjct: 342 KSMSDVKLNVSEEELSELAPAAAETVRYLRGGQSLSSLVLEH----ARVRGKLTEVEEDN 397

Query: 513 NELQKLWSFLFSDFVEQKYFLPEE--IHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
             L+     L     + K  +  +  +   L ++      KQLD    +     +  +  
Sbjct: 398 VNLRNTLEELLETIDQNKPQMISQKMVTDELFDKN-NRFEKQLDLAESERRQLLSQRDTA 456

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEAEKTAILISILHEVHI 626
             D+     +     + +  +S++  E+    E+Q          +    L   + ++  
Sbjct: 457 QRDLAYVRAELEKYQRDYEFVSKRNAELLYAVERQSRMQDPNWSEQADEQLFQNIVQLQR 516

Query: 627 QIHQIES 633
           +  ++ES
Sbjct: 517 RNVELES 523


>gi|325115337|emb|CBZ50892.1| putative 200 kDa antigen p200 [Neospora caninum Liverpool]
          Length = 1212

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 83/284 (29%), Gaps = 24/284 (8%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R     A +  +      +                 E+AE +   K      + ++    
Sbjct: 285 RQQRVEALDSAMATYAAQMKTQLASLRSLLDSQEDAEKAETQQAGKAREAQERTRENEET 344

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             +A+ +  +   Q    E        +  AR  + +  +    + +  + KL      +
Sbjct: 345 ERRALEELAKTKAQLEAAERRAEELGARAEARRHEAQTQAAVAARLAAAEEKLKTLEEAK 404

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           EA  + +         E+  EL  +      L+       +   E+     +        
Sbjct: 405 EAQAIASA--------EKAAELDSL------LETARGEALAWAAERAELTKKNYELEKKN 450

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
               +   +L+++  +    +   E    +V +         +  R L    EE   +  
Sbjct: 451 DELEKKNDELEKKNDELEKKNDELEKKNEEVERELAALRESEEARRRLEAAAEEQRVKAR 510

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
           +V    + E+             Q+ +   QE++ E   ++S R
Sbjct: 511 EVEEAMDEERA----------QHQLEKQHLQESLSEANARLSER 544



 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 99/320 (30%), Gaps = 28/320 (8%)

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
              +  +    D +    +   + +   L             + R ++     +   + A
Sbjct: 506 RVKAREVEEAMDEERAQHQLEKQHLQESLSEANARLSERAEEVCRLQETLGATQAQLEAA 565

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
            + L  E           E    +      R   E   +      KDQ+ R   ++ +  
Sbjct: 566 EKALQEERTAHEANKTSLEGAREACEARHRRELAERAEREK----KDQEERRALAEEVSG 621

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            L+    + I       R      R + +K  +   ++  L + + + + S  E   L  
Sbjct: 622 -LKAREAEAIQRAVTEQRAAMAEERGKFEKMIA--ALRRLLREAESALEASQAEQHALQ- 677

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                    E+   L D++   N ++            ++         +  E      L
Sbjct: 678 -----KRFAEEQPVLVDLQLKVNVMRA------EICSLERERDAAAKANQAQEETLRLSL 726

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK------RFRLLSRQKEEIEKQI-A 603
           +  D + R +   SA  E      R+G     A  K      R   + R+K ++E+++  
Sbjct: 727 E--DARARLSQHESALEETKREQAREGLVARAAQLKVHMLVGRLTQVEREKRDLEERLKQ 784

Query: 604 QVTAKGEAEKTAILISILHE 623
           +   +G+ E + +  +  +E
Sbjct: 785 EKREEGDGETSEVDFADANE 804


>gi|322491608|emb|CBZ26881.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1757

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 17/137 (12%)

Query: 513 NELQKLWSFLFS-------DFVEQKYFLPEEIHQRLCE---RGFGELLKQLDRQVRDAGL 562
            + + L + L            E          + L +   R      + L+R  R    
Sbjct: 787 QQHRALRAALLEEVQRRDQALEENCVAERRAHQEELQDVIMREKEASQRALERLERQHAA 846

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
                EA      +  + ALA+        +Q E  E +  +  A+ +A     L + + 
Sbjct: 847 AQRQVEAEAERRVRAGEDALAVR------EKQLEIAEAEWQRRRAEDKAASLQELTAHVA 900

Query: 623 EVH-IQIHQIESQEAMI 638
             H  Q+ +++ QEA++
Sbjct: 901 AQHAKQLAELKEQEAIL 917


>gi|317012919|gb|ADU83527.1| ATPase [Helicobacter pylori Lithuania75]
          Length = 859

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 83/274 (30%), Gaps = 11/274 (4%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL-KNCINHIKDQKLR 421
           I+     + E L    +        + TE        + +     L K     I+    +
Sbjct: 343 IQPDTVDSVEYLAQNEVEEFATNVSKFTEAIFNRIDSKLSGKLKELEKQITKSIEKFDEQ 402

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y Q      +QL +                 +    K    +  + +L+  K SK+  
Sbjct: 403 IAYWQEKTKLEEQLKESKKIRKKYQSIIDAFTDKDYLDKRDKLQAKRKALIDLKQSKEGF 462

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQR 540
           L     L  ++N      E  + + +    +    +L   +     E             
Sbjct: 463 LTFIKELKRIVNF-----ESKENMEEKNSYDKVYNQLKQDICKKLEEIDADIKNGRFKSD 517

Query: 541 LCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                      + L +++ +       ++ +I DVR        + K    L  + +EI 
Sbjct: 518 EENIEKLELEHQTLLQEIGEFLKEKGVSDESIGDVRNANYHLANIKKNIDDLKHEIKEIA 577

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +I   + + + +K        ++++ ++ +I S
Sbjct: 578 NKIENFSYE-DMDKNIEEFK--NQINKELSKINS 608


>gi|307332711|ref|ZP_07611734.1| ATP-dependent chaperone ClpB [Streptomyces violaceusniger Tu 4113]
 gi|306881641|gb|EFN12804.1| ATP-dependent chaperone ClpB [Streptomyces violaceusniger Tu 4113]
          Length = 880

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 73/208 (35%), Gaps = 4/208 (1%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++K+I + +   R ++           +  +++    + ++     +++ AL+    ++H
Sbjct: 324 YRKHIEKDAALERRFQMVLVDEPSVEDTISILRGLRERLEVFHGVKIQDTALVSAATLSH 383

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK-QL 553
             I      +   I   +    +L + + S   E            + E    +      
Sbjct: 384 RYISDRFLPD-KAIDLVDEACARLRTEIDSMPAELDEITRRVTRLEIEEAALSKESDPAS 442

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            +++ +     A   A        ++      +R + L R+ EE+ ++  +     +  +
Sbjct: 443 AQRLEELRRELADLRAEADAKHAQWEAERQSIRRVQDLRRELEEVRREAEEAERAYDLNR 502

Query: 614 TAIL-ISILHEVHIQIHQIESQEAMIEG 640
            A L    L E+  ++   E Q A  +G
Sbjct: 503 AAELRYGRLQELQRKLAAEEEQLAAKQG 530


>gi|302848593|ref|XP_002955828.1| hypothetical protein VOLCADRAFT_96773 [Volvox carteri f. nagariensis]
 gi|300258796|gb|EFJ43029.1| hypothetical protein VOLCADRAFT_96773 [Volvox carteri f. nagariensis]
          Length = 1701

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 90/274 (32%), Gaps = 15/274 (5%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P    R   +     +   +          E         + +      L + +   +  
Sbjct: 839  PARRWRPVLQALVGIMKRNANEAERQGQALEQARERILGMEAQVARANELASSLAAHQ-- 896

Query: 419  KLRYYYSQAIRD--RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            +L+  +   + +  R   L  + + E +   +   +          +   M+S+  + +L
Sbjct: 897  QLKAAHLTELEESHRSIALMDQALAEANRECQRLHRQLEELSAAHKAL-TMESAARESRL 955

Query: 477  SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
              + + RE AL         + +++ +  A +      +Q L +   +    Q       
Sbjct: 956  QAQATEREVALQA------QLSEKEERLRAAMADQEKRVQVLSAEWEAKLAAQSAERDAR 1009

Query: 537  IHQRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLS 592
            +H  + +        + ++  R V       A     ++D    + +A+   + R   L+
Sbjct: 1010 LHSAVMDAEARLQSSVSEREARLVAAVADGEARLHKAVLDADARFHEAITEREARLAALA 1069

Query: 593  RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
             ++E +++QI+ ++A    +K    +  L     
Sbjct: 1070 SERESLQRQISTMSALQSEDKQERDMLRLRAHRR 1103


>gi|281424375|ref|ZP_06255288.1| DNA repair protein RecN [Prevotella oris F0302]
 gi|281401644|gb|EFB32475.1| DNA repair protein RecN [Prevotella oris F0302]
          Length = 553

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 102/322 (31%), Gaps = 28/322 (8%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI--RCYGKTAFEKLIVESL 379
           D            I+        G    F       D +  I  R   K    +  V  +
Sbjct: 51  DTKVIKADRDKCVIEAHFNLSKYGMDQFFADNDIDYDSEDCIIRREINKNGKSRAFVNDM 110

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI----KDQKLRYYYSQAI-RDRLQQ 434
           P+   L +   E         +  L       +N +     D++ R  Y ++    R   
Sbjct: 111 PVQLTLMRELGEMLVDIHSQHQNLLLQKENFQLNVVDIIAHDEQERKNYQESFKAYRKAH 170

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
              K + E+   G+  ++  R +  +     L        +   +       +   L   
Sbjct: 171 ADLKQLEENIAQGKENEEFMRFQFNEIEKANLKADEQENIEQETEQLSHSEEIKEALFEG 230

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             +L      + + R    ++++  + L    +EQ Y   +E+ +RL        LK + 
Sbjct: 231 DGLL------IGEERGAVEQVKRAANRL--HAIEQVYPNAKELAERLDNCHIE--LKDIA 280

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-----LLSRQKEEIEKQIAQVTAKG 609
           +++           A +  + +      +L ++F       L + KEE+ KQ+      G
Sbjct: 281 QEISRDTDHIEFDPARLDQLNERLDTIYSLQQKFHVSTIAELLQIKEELGKQL------G 334

Query: 610 EAEKTAILISILHEVHIQIHQI 631
             + +  L+    +   Q+ Q+
Sbjct: 335 NIDNSEELLEETRQRVNQLEQL 356


>gi|227889145|ref|ZP_04006950.1| replicative DNA helicase DnaB [Lactobacillus johnsonii ATCC 33200]
 gi|268318574|ref|YP_003292230.1| hypothetical protein FI9785_75 [Lactobacillus johnsonii FI9785]
 gi|227850374|gb|EEJ60460.1| replicative DNA helicase DnaB [Lactobacillus johnsonii ATCC 33200]
 gi|262396949|emb|CAX65963.1| dnaB [Lactobacillus johnsonii FI9785]
          Length = 457

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 10/144 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +     S  E A+L  +   P  + +    L    +  +  + ++  + +    ++   
Sbjct: 6   SQQIPHDSEAEKAVLGAVFLDPEAIIDASDVLQPDDFYEHANRIVFQAMLNISDREEVID 65

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  +   L +            QV D G  +  TE ++      +    A   + + + R
Sbjct: 66  PVTLQDELKKN----------NQVDDIGGIAYVTELSMATPTAAHVTYYAKIVKRKAILR 115

Query: 594 QKEEIEKQIAQVTAKGEAEKTAIL 617
                 ++I Q   +G  + T IL
Sbjct: 116 NLISTSQRIIQNAIEGSDDVTDIL 139


>gi|190570590|ref|YP_001974948.1| replicative DNA helicase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019158|ref|ZP_03334965.1| replicative DNA helicase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190356862|emb|CAQ54236.1| replicative DNA helicase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995267|gb|EEB55908.1| replicative DNA helicase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 480

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 55/178 (30%), Gaps = 16/178 (8%)

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E  L+  +I    I       +A   + +   Q +++ +             
Sbjct: 16  KLPHNLEAEQMLIGAMIRDNRICDAVEDIIAADNFYDPLHQSIFTQISKTRKHGIVANEL 75

Query: 536 EIHQRLC-ERGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR----- 587
            +      ++ F E   ++ L +    A +         +      ++ L    +     
Sbjct: 76  SLKMFFENDKAFAECGGVEYLAKLAAKASIALDIYSLTRIIRDTYLRRCLIKLGQETIDD 135

Query: 588 ------FRLLSRQKEEIEKQIAQVTAKGEAEK-TAILISILHEVHIQIHQIESQ-EAM 637
                       Q E+   ++  +  K + EK    L S + +V  +I ++++  EA+
Sbjct: 136 SYNYDIENPAQVQIEQAMTKLFNLAVKKQGEKTYIKLASSIKDVVEKISKLKNNPEAL 193


>gi|189230039|ref|NP_001121513.1| epidermal growth factor receptor pathway substrate 15-like 1
           [Xenopus (Silurana) tropicalis]
 gi|183985776|gb|AAI66356.1| LOC100158630 protein [Xenopus (Silurana) tropicalis]
          Length = 898

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 53/144 (36%), Gaps = 13/144 (9%)

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
           +   Q++       +  ++    +E   R       +L   LDR+        A  +   
Sbjct: 386 DEISQEIAQLQREKYALEQDIREKEEAIRQKSTEVQDLQNDLDRETSTLQELEAQKQDAQ 445

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEE-------IEKQIAQVTAKGEAEKTAILISILHEV 624
             + +  QQ   L      + ++ +E       ++ QI    +  +A++       L+  
Sbjct: 446 DRLDEMDQQKAKLKDMLNDVRQKCQEEGQMISSLKIQIQSQESDVKAQE-----EELNRA 500

Query: 625 HIQIHQIESQEAMIEGFGKMSGRL 648
             ++++++ +E  +E     +GR+
Sbjct: 501 KSELNRLQQEETQLEQ-SIQAGRV 523



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 32/76 (42%), Gaps = 9/76 (11%)

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK-----GEAEKTAILISIL----HE 623
           ++ +  Q+   L +    L +   E E+ I Q + +      + ++    +  L     +
Sbjct: 384 ELDEISQEIAQLQREKYALEQDIREKEEAIRQKSTEVQDLQNDLDRETSTLQELEAQKQD 443

Query: 624 VHIQIHQIESQEAMIE 639
              ++ +++ Q+A ++
Sbjct: 444 AQDRLDEMDQQKAKLK 459


>gi|125624603|ref|YP_001033086.1| DnaC protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493411|emb|CAL98385.1| DnaC protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071394|gb|ADJ60794.1| replicative DNA helicase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 455

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 7/152 (4%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K   +    E A+L  +      L E  + L+   +  N  + ++  +      ++    
Sbjct: 8   KAPPQDLAAEQAVLGAVFLDSERLVEIKEFLSSDDFYKNAHKIIFRTMEKLSDAREAIDV 67

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I   L  +G      +L+     A +    T          Y + +A     R L  +
Sbjct: 68  LTIRSHLENQG------ELEAIGGIAYIAELATATPTAANAAYYAKIVAEKSLLRQLINR 121

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
             E  ++  +  +  + +  A     L +V  
Sbjct: 122 LTESVEKAYEQDSPAD-DILAQAEKSLIDVQQ 152


>gi|157125406|ref|XP_001654325.1| myosin heavy chain [Aedes aegypti]
 gi|108882689|gb|EAT46914.1| myosin heavy chain [Aedes aegypti]
          Length = 737

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 87/240 (36%), Gaps = 15/240 (6%)

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
            ++   + +    + +Q  R    +    +    FQ          +  ++ +R +D   
Sbjct: 169 QKMTNEMNDLRMLLDEQSSRNNLLEKRHKKFDSEFQVLQDTIRQEKQARERLSREKDFLF 228

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
             +  ++ ++   +   +    +  +L        + +  ++ + +    N + QK+   
Sbjct: 229 AEKSTLEQTISDVRHELELKEEKYGVLQQ-----ELAEMTFEGITEEEIANLKRQKM-EL 282

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG---- 577
           L     +++         ++ E+    L   L+   +++   +   E  I ++R      
Sbjct: 283 LRRCKEQEEDLDEMAAQIQILEQVKLRLEMSLETVRKESRKETQQREDEIEEIRSNCYKK 342

Query: 578 ----YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                 Q    ++   ++ R+K E+E+++  +     AE+ A     + ++  ++ + ++
Sbjct: 343 IKSLECQLEQEHEERTVMLREKHELERRLRSIEENERAEQVAEETV-IQKLKRELRKNKA 401


>gi|118371099|ref|XP_001018749.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila]
 gi|89300516|gb|EAR98504.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila SB210]
          Length = 1823

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 93/242 (38%), Gaps = 28/242 (11%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + ++  L+ +  +   E     +  ++N   + Q+  +Q+      +  +  K   L E
Sbjct: 1020 IEELQKELKDIKSE-KDEIEKTTKKKQQNFEKKIQEIETQKKQFEDQIFNESDKSTILFE 1078

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            + L    I +  + ++ ++E+ + +   ++  +    L+ + ++      +E+   +   
Sbjct: 1079 STLKQLRIENKELERKYFEEIENYKIIQSQFCE-KEMLYKNEIDDLQRKIQELKHHVTYD 1137

Query: 545  GF-------------------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
                                  E ++ L  Q++D    +   E  + ++ Q Y+++    
Sbjct: 1138 NINQQKVSRNVQQLQEEVILAREQIRDLSLQLKDVSESAFQLERQLNEIIQKYEESQQQI 1197

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQ-----EAMI 638
             +++ +  + E+++++  +     E   E+   L   + E+  Q   I  Q     EA+ 
Sbjct: 1198 IKYKAIEDEMEQLKRRSQREQQYKEQINEELEALKQYVQEIQRQKDNISVQIKLKDEAIQ 1257

Query: 639  EG 640
            EG
Sbjct: 1258 EG 1259


>gi|118099536|ref|XP_001231409.1| PREDICTED: similar to skeletal myosin heavy chain [Gallus gallus]
          Length = 1939

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 84/277 (30%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  +L   +    +       +      ELE   K     ++D +      
Sbjct: 1352 EEEQEAKGELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1411

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1412 NSKCASLEKTKQRLQNEVEDLMIDVERANSACAALDKKQKNFDKILSEWKQKYEETQAEL 1471

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+  S L     E         
Sbjct: 1472 EASQKESRSLSTELFKMKNAYEESLDHLETLKRENKNLQQEISDLTEQIAEGGK------ 1525

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +A++ +     +       R   L  +  +
Sbjct: 1526 -----------AIHELEKVKKQIEQEKSELQASLEEAEASLEHEEGKILR---LQLELNQ 1571

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1572 VKSEIDRKIAEKDEEIDQLKRNHLRIVESMQSTLDAE 1608


>gi|251823950|ref|NP_001156538.1| myosin-13 [Oryctolagus cuniculus]
 gi|12003423|gb|AAG43570.1|AF212147_1 skeletal muscle myosin heavy chain MyHC-EO/IIL [Oryctolagus
            cuniculus]
 gi|12003425|gb|AAG43571.1|AF212148_1 skeletal muscle myosin heavy chain MyHC-EO/IIL [Oryctolagus
            cuniculus]
 gi|12003427|gb|AAG43572.1|AF212149_1 skeletal muscle myosin heavy chain MyHC-EO/IIL [Oryctolagus
            cuniculus]
          Length = 1938

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 29/273 (10%), Positives = 86/273 (31%), Gaps = 17/273 (6%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       + +   E         I+ +       + +  
Sbjct: 1565 VQLELNQVKSELDRKLTEKDEEMEQLKRNSQRAAEALQSVLDAEIRSRNDALRLKKKMEG 1624

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +            K     + Q   SQ  +  +L          L+E   L  
Sbjct: 1625 DLNEMEIQLGHASRQVAETQKHLRTVQGQLKDSQLHLDDAL-----RSNEDLKEQ--LAM 1677

Query: 491  LINHPAILQEQYQELADIRYDNNELQKL-WSFLFSD-----FVEQKYFLPEEIHQRLCER 544
            +     +LQE+ +E+          ++L    L         +  +        ++L E 
Sbjct: 1678 VERRNGLLQEELEEMKVALEQTERTRRLSEQELLDASDRVQLLHSQNTSLINTKRKL-EA 1736

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               +   +++  ++++       +  I D     ++          L R K+ +E+ +  
Sbjct: 1737 DLAQCQAEVENSLQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKD 1796

Query: 605  VTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
            +  + +  +   L      + ++  ++ ++E++
Sbjct: 1797 LQHRLDEAEQLALKGGKKQIQKLENRVRELETE 1829



 Score = 37.2 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 85/261 (32%), Gaps = 28/261 (10%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS----- 444
             EN      ++  + E  +      I D++++    Q     LQ   ++   E       
Sbjct: 1073 LENDKQQVEEKLKKKEFEISQLQTKIDDEQVQSLQLQKKIKELQARTEELEEEIEAEHTL 1132

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-------INHPA- 496
                  +++   R+ +  S+RL ++S       +    REA             + H A 
Sbjct: 1133 RAKIEKQRSDLARELEEISERLEEASGATSAQIEMNKKREAEFQKLRRDLEEATLQHEAT 1192

Query: 497  ---ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + ++    +A++    + LQ++   L      +     +++   +      +    +
Sbjct: 1193 AATLRKKHADSVAELGEQIDNLQRVKQKL-EKEKSELKMEIDDLASNIETVSKSK--SNV 1249

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQAL----ALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            +R  R         +A      Q           L  +   L+ Q EE E  I+Q+T   
Sbjct: 1250 ERMCRSVEDQFNEIKAKDDQQTQLIHDLNMQKARLQTQNGELNHQVEEKESLISQLTKG- 1308

Query: 610  EAEKTAILISILHEVHIQIHQ 630
                   L   L EV  Q+ +
Sbjct: 1309 ----KQALSQQLEEVKRQLEE 1325


>gi|87311811|ref|ZP_01093925.1| ClpB protein [Blastopirellula marina DSM 3645]
 gi|87285485|gb|EAQ77405.1| ClpB protein [Blastopirellula marina DSM 3645]
          Length = 953

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 72/220 (32%), Gaps = 15/220 (6%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F++YI + +   R ++           +  +++    + +      ++++AL+       
Sbjct: 387 FRQYIEKDAALERRFQPVFVGEPSVEDTIAILRGLKPRYEAHHGIKIKDSALVAAAKLSD 446

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ--- 552
             + +++     I   +    +L   + S   E      +     L +R   E  ++   
Sbjct: 447 RYITDRFLPDKAIDLVDEASSRLAIEMESVPGEIDAVQRQLTQLELADRQLAEETEESAV 506

Query: 553 -----LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
                +  ++ D     A+        + G      +      L  Q  ++   I +  A
Sbjct: 507 ERRAEIQTEMTDLRRQLASLREQWETEKLGLGDVTKVRHELAQLELQFSQLHASIQEKQA 566

Query: 608 KG------EAEKTAILISILHEVHIQI-HQIESQEAMIEG 640
            G      + ++   L      +  ++  +++  +A  EG
Sbjct: 567 SGAPVSESDYQQLFELQKKRDALTARMDAEVDHSDAAKEG 606


>gi|108803521|ref|YP_643458.1| ATPase AAA-2 [Rubrobacter xylanophilus DSM 9941]
 gi|108764764|gb|ABG03646.1| ATPase AAA-2 [Rubrobacter xylanophilus DSM 9941]
          Length = 886

 Score = 40.6 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 65/210 (30%), Gaps = 12/210 (5%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y     +RL+++  +          +  +             +  S+++K  L++     
Sbjct: 329 YRGEFEERLKKVIDEIREHSDELIIFIDELHTVVGAGAAEGAMDASNMLKPALARG---- 384

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  ++         + E  + +          Q +   +    VE+   +   +  R   
Sbjct: 385 ELHVIGA-----TTIDEYRKNIEKDAALERRFQPVL--VSEPSVEETVEILTGLKDRYEA 437

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQI 602
               ++ ++      +      T             QA   +  R R       EIE++I
Sbjct: 438 HHGVKISEEAIVAAAELSDRYITDRFLPDKAIDLMDQAAARVKLRSRTKPEDAREIEEEI 497

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            ++  + +   +A       E+  QI +++
Sbjct: 498 KKLQREKDRAVSAEDYRRAQELKGQIQELK 527


>gi|332255184|ref|XP_003276712.1| PREDICTED: huntingtin-interacting protein 1 [Nomascus leucogenys]
          Length = 914

 Score = 40.6 bits (93), Expect = 0.82,   Method: Composition-based stats.
 Identities = 20/214 (9%), Positives = 73/214 (34%), Gaps = 3/214 (1%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             ++   +F    +             +        +   + S +K +L    +  +  +
Sbjct: 220 FDNKFDDIFGSSFSSDPFNFNSQNGVNKDEKDHLIERLYREISGLKAQLENMKTESQRVV 279

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-HQRLCERGF 546
           L        +  E  ++    +   ++ + L + L     +++     +     +  +  
Sbjct: 280 LQLKGRVSELEAELAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQ 339

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
               +    + + + L     +    +     +Q     +    L R+K+E+E  + +++
Sbjct: 340 ANEQRYSKLKEKYSELVQNHADLLRKNAEVT-KQVSVARQAQGDLEREKKELEDSLERIS 398

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +G+  KT   + +L  +  ++   + +  +++G
Sbjct: 399 DQGQR-KTQEQLEVLESLKQELATSQQELQVLQG 431


>gi|307212717|gb|EFN88393.1| Rho-associated protein kinase 2 [Harpegnathos saltator]
          Length = 1370

 Score = 40.6 bits (93), Expect = 0.82,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 74/232 (31%), Gaps = 28/232 (12%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + I+ RLQ+L  ++  E         +  + + ++     L      +   + +   RE 
Sbjct: 740 RQIQQRLQKLEGEHRQEMEKVKVLQGQVEQEQQKRNV---LQTELGQQTSEAGRLRAREQ 796

Query: 486 ALLLTLINHPAILQEQYQELADIR-------YDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            L+  +       ++  +EL  ++           ELQ+      + F        +E+ 
Sbjct: 797 QLVGEVAQLREAKRQIEEELHHLKTQRNVDQLQTKELQEQLEA-EAYFSTLYKTQTQELR 855

Query: 539 QRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK------- 586
           + L E     + F E    L  Q++ +     +         +                 
Sbjct: 856 EELDEKVRLQQEFEEERSSLVHQLQLSLARGDSEALARSIAEETVADLEKERTMKELEYK 915

Query: 587 ----RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               +       KE++  ++ +  ++ +       +    ++  ++ +++ Q
Sbjct: 916 DGVAKHHQELNAKEQLINRLKENESEFKK-SVEQTLKDKEDLSKRLKELQEQ 966


>gi|291445100|ref|ZP_06584490.1| peptide chain release factor 2 [Streptomyces roseosporus NRRL
           15998]
 gi|291348047|gb|EFE74951.1| peptide chain release factor 2 [Streptomyces roseosporus NRRL
           15998]
          Length = 368

 Score = 40.6 bits (93), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 4/114 (3%)

Query: 521 FLFSDFVEQKYFLP--EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
            +     E K        I   L        +  L+ Q     LW    +A    +    
Sbjct: 2   AVVDISEELKSLSSTMGSIEAVLDLDALRADIAALEEQAAAPSLWD-DPDAA-QKITSKL 59

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
               A  ++   L  + +++E       A+G+A+  A   + L  V   + ++E
Sbjct: 60  SHLQAEVRKAEALRGRIDDLEVLFELAEAEGDADAQAEAETELESVKKALDEME 113


>gi|2326183|gb|AAC47711.1| Rap8 [Rhynchosciara americana]
          Length = 281

 Score = 40.6 bits (93), Expect = 0.82,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 12/150 (8%)

Query: 494 HPAILQEQYQELADIRYDNNELQKLWS-------FLFSDFVEQKYFLPEEIHQRLCERGF 546
           +  +  +  + +A       E + L          +     E           +   +  
Sbjct: 42  YDELKNDYLESIAIREAQEKERKDLIQQVQVANDKICKLSEENHNLSVAVKQYKEENKNL 101

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            E +  L + + +     +       D+R          +    L R   E+E +I Q+ 
Sbjct: 102 KETIGSLKKTIEELKKQLSK---AQEDLRSCGNALECCNREKEALLRTIYELECKIKQLQ 158

Query: 607 AK--GEAEKTAILISILHEVHIQIHQIESQ 634
            +  G  E+ A L   L E   ++ + E +
Sbjct: 159 EEINGYKEEIAKLNKELDEFKHKLARCEKE 188


>gi|73960922|ref|XP_537246.2| PREDICTED: similar to Lamin A/C (70 kDa lamin) isoform 1 [Canis
           familiaris]
          Length = 573

 Score = 40.6 bits (93), Expect = 0.82,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 101/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   +  +LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVTKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         + E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LADKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|76802765|ref|YP_330860.1| rad50 ATPase [Natronomonas pharaonis DSM 2160]
 gi|76558630|emb|CAI50222.1| homolog 1 to rad50 ATPase [Natronomonas pharaonis DSM 2160]
          Length = 644

 Score = 40.6 bits (93), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 51/132 (38%), Gaps = 4/132 (3%)

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
             ++ L  L++FL      ++    E   + L  R      +++ R++          + 
Sbjct: 97  LADSTLADLFAFLLESNEARRRVATEGDLRELIMRPVDT--EEIQREIDRLSERRNEIDD 154

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQ 627
            +  +     +  +L +R   L  + EE E ++A V A+ +              E+  +
Sbjct: 155 ELSTLDSLKDRLPSLEERRTQLRGEIEETEAELADVEARLDERDADIEQTREEKAELEER 214

Query: 628 IHQIESQEAMIE 639
           + ++ ++ + +E
Sbjct: 215 LTELRTKRSELE 226


>gi|332867883|ref|XP_003318742.1| PREDICTED: protein CASP isoform 3 [Pan troglodytes]
          Length = 632

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 110/354 (31%), Gaps = 29/354 (8%)

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED-- 358
           A     +   WK      L  + D      A +  +          +      +  ED  
Sbjct: 2   AANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLR 61

Query: 359 ----PDSFIRCYGKTAFEKLIVESLPLVDMLWKRET---ENRSFNTPDERAELEIHLKNC 411
               P          A  K   E+      ++KR     E       ++  E E  LKN 
Sbjct: 62  KQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPEVTIKALKEKIREYEQTLKNQ 121

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
              I  +K +        ++ ++L +  ++  S       K    +     ++  +    
Sbjct: 122 AETIALEKEQKL-QNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLK 180

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            K          E  +++T +       E  Q          E + L   L S     + 
Sbjct: 181 TKYDEETTAKADEIEMIMTDLERANQRAEVAQR---------EAETLREQLSSANHSLQ- 230

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                +  ++ +    E   ++  +     +  A  E  I  + +  Q+  A   + R  
Sbjct: 231 -----LASQIQKAPDMEQAIEVLTRSS-LEVELAAKEREIAQLVEDVQRLQASLTKLREN 284

Query: 592 SR-QKEEIEKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           S  Q  ++E+Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 285 SASQISQLEQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 338


>gi|332265688|ref|XP_003281848.1| PREDICTED: golgin subfamily A member 3 [Nomascus leucogenys]
          Length = 1384

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 528 EQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           E      E    ++ E       +L ++L+    +        ++     +Q  +  L L
Sbjct: 573 EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLERVKLTL 632

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGE-----AEKTAILISILHEVHIQIHQIESQEAMIE 639
            +R + L   ++E    + Q+T   E      +    L +   E+  ++ +++ + A  E
Sbjct: 633 LQRDQQLEALQQEHLDLMKQLTLTQEALQSREQALDALQTHYDELQARLGELQGEAASRE 692



 Score = 37.6 bits (85), Expect = 6.4,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 103/305 (33%), Gaps = 25/305 (8%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                       +  ++E L L ++   ++       +  E+  +   L+     + DQ+
Sbjct: 521 GEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQE 580

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSK 478
             +   Q  +  +++  Q+ + E  G     ++ A      +   +R+  + L + +  +
Sbjct: 581 AAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLERVKLTLLQRDQQLE 640

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY----FLP 534
                   L+  L      LQ + Q L  ++   +ELQ     L  +   ++        
Sbjct: 641 ALQQEHLDLMKQLTLTQEALQSREQALDALQTHYDELQARLGELQGEAASREDTICLLQN 700

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ----QALALYKRFRL 590
           E+I      +      ++L+R  R     +  T   +  +R+       Q   L +    
Sbjct: 701 EKIVLEAALQAAKSGKEELERGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAA 760

Query: 591 LSRQKEEIEKQI----------AQVTAKGEA------EKTAILISILHEVHIQIHQIESQ 634
           L +Q ++I++Q            +     +            L S L E+  ++ Q+  +
Sbjct: 761 LKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGE 820

Query: 635 EAMIE 639
           +   E
Sbjct: 821 KRATE 825


>gi|325114418|emb|CBZ49975.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 1943

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 65/206 (31%), Gaps = 18/206 (8%)

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQR--LMQSSLVKGKLSKKPSLREAALLLTLIN 493
             Q+ I +   Y    +     ++ +  S R  L +      +  ++   RE       + 
Sbjct: 1145 LQRQIQQKEAYAAELESRLEAKETEVESLRVALEREKKENEEAREREQQRERDREKLGLQ 1204

Query: 494  HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                 +E   +L  ++    EL +L +       E        + QR  E+   E +++ 
Sbjct: 1205 -----REVEAQLESVKRLEEELARLRAKEAEWIAEVDKRDATIVAQRRREQELSEEVRKR 1259

Query: 554  DRQVR--DAGLWSATTEANIVDVRQGY--------QQALALYKRFRLLSRQKEEIEKQIA 603
            +  +   +A +     E     +                   +   LL  + + +++Q+ 
Sbjct: 1260 EEALVLQEAQVQHFREETERERLAAEKRKEEREIEADREFSNRLQALLEEETKNLKQQL- 1318

Query: 604  QVTAKGEAEKTAILISILHEVHIQIH 629
            +V A+    K       L     ++ 
Sbjct: 1319 EVEAQLHERKCREYEEELRAKTAELE 1344


>gi|323489555|ref|ZP_08094782.1| chromosome partition protein smc [Planococcus donghaensis MPA1U2]
 gi|323396686|gb|EGA89505.1| chromosome partition protein smc [Planococcus donghaensis MPA1U2]
          Length = 1182

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 66/203 (32%), Gaps = 10/203 (4%)

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
            + S   R   +   + + +     L++    +     +    E   + T I    + ++
Sbjct: 309 EKKSNANRQALQLQENVEAEKQENELLKKKHSEQLALLEERKTERHSIRTAIQ--QLEEQ 366

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
             +  ADI  +    + ++        EQ     E  +  L E+   E   ++  Q  D 
Sbjct: 367 LNRTPADIDNEIENCKSIY---IDLMNEQATVKNELKNIGLQEQQLTESTGRISTQRADF 423

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA--ILI 618
               +  +A      +  Q+        R   +Q +E E    Q     E +++      
Sbjct: 424 TAELSKLKAEKERAEKEVQEVRFTLDNKR---KQYKESEAAYQQQKQAFEQKQSMLFQAY 480

Query: 619 SILHEVHIQIHQIESQEAMIEGF 641
               ++  +I  +E  EA   GF
Sbjct: 481 QSQKQLAARIETLEELEADFSGF 503



 Score = 37.2 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 65/211 (30%), Gaps = 14/211 (6%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            ++ Q  F     E        K+          + R  Q ++   + + +    E    
Sbjct: 666 ANKTQASFFTRKAELEQLLVQAKELEETILTAEKTVRTEQETVKAAEETIRILQTEGEKY 725

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG--F 546
             L    AIL  + + +     +          +F    + K +    I +R        
Sbjct: 726 RDLEAESAILLREIEAVLKTTLE-------RFDIFEAEQKNKEYDLTAITKRKETASTRL 778

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
             ++ +L+         +   + N    R      LA  K    +++++     Q+    
Sbjct: 779 DNIVGELNDITFKIDELTLFKQQN-ESARDQVLTKLAEQKSLYAVTKER---VAQLTASE 834

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           A+   E+       L +   ++  I+S+EA 
Sbjct: 835 AEL-FERLEKSKQKLQDHQKELEWIQSEEAA 864


>gi|315154380|gb|EFT98396.1| putative DNA primase [Enterococcus faecalis TX0031]
          Length = 719

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 13/89 (14%)

Query: 5  RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63
          +  ++++     I ++     +   R+  +    +       HD    SF     K  +Y
Sbjct: 9  QKVLEEI-ERKSIVDVAESLGITLVRQGQSYTWSE-------HD----SFVLTPKKNAFY 56

Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRL 92
            S  V G  +  +  +  C++ E++Q L
Sbjct: 57 WNSRQVGGGSIKLVQVIKECTYAEALQYL 85


>gi|301605238|ref|XP_002932251.1| PREDICTED: myosin-11-like isoform 1 [Xenopus (Silurana) tropicalis]
          Length = 1980

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 94/265 (35%), Gaps = 10/265 (3%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     +     E E        ++ ELE  L      +++++ R    QA + +  Q  
Sbjct: 899  QEQLQAETELYAEAEELRIRLQAKKQELEEVLHEMEVRLEEEEDRGQQLQAEKKKTLQQM 958

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            Q    +        +K    +       + ++  ++          +E  +L   +N   
Sbjct: 959  QDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDVLVMDDHHNKLTKEKKILEERVNDLT 1018

Query: 497  I-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEIHQRLCER--GFGELLK 551
              L E+ ++  ++    N+ + + S L       E+     E++ ++L        E + 
Sbjct: 1019 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKGRQELEKVKRKLEGEANDLNEQIA 1078

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
             L  Q+ +  +  A  E  +       +   A   +     ++  E+E  I+ +    E+
Sbjct: 1079 DLQAQIAELKMQLAKKEEELQAALARLEDETA---QKNNALKKIRELESHISDLQEDLES 1135

Query: 612  EKTAILISI--LHEVHIQIHQIESQ 634
            EK+A   +     ++  ++  ++++
Sbjct: 1136 EKSARNKAEKSKRDLGEELEALKTE 1160



 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 60/216 (27%), Gaps = 28/216 (12%)

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
              L  +     +   +  ++    +         M+ ++ + +        E +      
Sbjct: 1731 SSLQDEKRRLEARISQLEEELEEEQGNMEGMSDRMRKAVQQAEQLNNELAAERS------ 1784

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL---------CE 543
                  Q+       +   N EL+     +      +       +  ++           
Sbjct: 1785 ----TSQKNESARQQLERQNKELKAKLQEMEGTVKSKFKSTIAALEAKISQLEEQVEQES 1840

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            R     +K L ++ +         E       Q   Q+     R + L RQ EE E++  
Sbjct: 1841 RDKQSTVKTLRQKEKKLKEALLQVEDERKQAEQYKDQSEKGNVRQKQLKRQLEEAEEESQ 1900

Query: 604  QVTAKGEA---------EKTAILISILHEVHIQIHQ 630
            ++ A             E +  L   L+ +  ++ +
Sbjct: 1901 RINASRRKLQRELDEANESSEALSRELNSLKSKLRR 1936


>gi|296221330|ref|XP_002756680.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A
           isoform 1 [Callithrix jacchus]
          Length = 1364

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|281204331|gb|EFA78527.1| hypothetical protein PPL_09179 [Polysphondylium pallidum PN500]
          Length = 1074

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 49/147 (33%), Gaps = 15/147 (10%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQL 553
            + ++  +    +   NN+L++          E      EE+ +RL +      EL  ++
Sbjct: 556 QLKRDNVELKDKLSNANNDLKRAKDQ-----KESAERDLEELRERLRDSQDKEDELRSRI 610

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQ------QALALYKRFRLLSRQKEEIEKQIAQV-- 605
                          ++                     +R +   +++E +E+Q++    
Sbjct: 611 SSLEDQNEQLQNKVNSSQTMAAASLSLGGGKSDKNKDKEREKAERQERENLERQLSDTKK 670

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIE 632
               E +K       + ++  +I Q+E
Sbjct: 671 ELSNERDKVRKYEREIKDLKDRIRQLE 697


>gi|253571557|ref|ZP_04848963.1| DNA primase [Bacteroides sp. 1_1_6]
 gi|293369642|ref|ZP_06616220.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|251838765|gb|EES66850.1| DNA primase [Bacteroides sp. 1_1_6]
 gi|292635346|gb|EFF53860.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 318

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 10/75 (13%)

Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF---LSAL 80
          Y    ++  N      W   P  +E   SF  N  +  +Y F     G  +     L A 
Sbjct: 20 YSPVKQQGVNL-----WYKSPLREEAEASFKVNTEREQWYDFGLGKGGGIIELAAHLYAT 74

Query: 81 LGCSFIESVQRLAAI 95
              +I  ++R+A  
Sbjct: 75 DHVPYI--LKRIAEQ 87


>gi|242086176|ref|XP_002443513.1| hypothetical protein SORBIDRAFT_08g020780 [Sorghum bicolor]
 gi|241944206|gb|EES17351.1| hypothetical protein SORBIDRAFT_08g020780 [Sorghum bicolor]
          Length = 1524

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
           +N EL+ L   L         F  +    R  +R     +  ++  +       A  E  
Sbjct: 553 NNTELELLRRKLKDSEESTHTFRNQNSVLRSEKRTLMREVDSINSALLSLETQYAELEGR 612

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            +D+ Q   +AL    R R L R ++E  K+         +     +  +L EVH +  Q
Sbjct: 613 YLDLEQDKDRALNEVIRLRELLRLEKEKHKEATNSDMTQFSAMQKQIGLLLKEVHRREDQ 672

Query: 631 IESQE 635
           ++ +E
Sbjct: 673 LQEEE 677


>gi|258577851|ref|XP_002543107.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237903373|gb|EEP77774.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 429

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             E I +   E+   +   ++ + +      +   + +    R     A    +R + L 
Sbjct: 93  SSEAIKRAEVEQQLAKRQIEILQSMEYRSRQTQLQQPSPQPQRNAELDA--AMRRIQELE 150

Query: 593 RQKEEIEKQIAQVTA--KGEAEKTAILISILHEVHIQIHQ 630
           + K  +E+++ +     + +A+K  +L+     +  +I +
Sbjct: 151 QAKGTLERRLRRAKKVIEEDADKYELLMEENARLKKRIRE 190


>gi|126738031|ref|ZP_01753752.1| SMC protein [Roseobacter sp. SK209-2-6]
 gi|126720528|gb|EBA17233.1| SMC protein [Roseobacter sp. SK209-2-6]
          Length = 1151

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 75/252 (29%), Gaps = 20/252 (7%)

Query: 398 PDERAELEIHLKNCINHIKDQKL-RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
             +              ++ ++L R    +   +R+          H    R  ++ ++ 
Sbjct: 614 RWDGFRAWAEDAPSAAALRLEQLNRLEALKQDMERVSAKADGARAAHEMLMRKLEEVSQA 673

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI-LQEQYQELADIRYDNNEL 515
                 ++R+    +     +   +  E  L    +    I +    ++  + R    + 
Sbjct: 674 DQNARQARRVADQRVADAARALSRAEAERNLAEGKLETLGIAVARHSEDAMNARLQLKDA 733

Query: 516 QKLWSFLFSDFVEQKYFLPE-EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
           +           +           + + +      +  L  +     L     EA I   
Sbjct: 734 ET-------ALADLGDLDAARAAVEDIKQSVEAARITMLTHRSAHDELRREG-EARIKRA 785

Query: 575 RQGYQQALALYKRFRLLSRQKEEI-------EKQIAQVTAK-GEAEKTAILISILHEVHI 626
           +Q  ++      R     R+ EE+       ++++    A   E  +    ++   E   
Sbjct: 786 QQVTKEVSGWRHRLDTAERRIEELAERRETSQEELEDAHAVPAEIAEKREELNEAIE-EA 844

Query: 627 QIHQIESQEAMI 638
           Q+ + ++ EA++
Sbjct: 845 QLRKTDATEALV 856


>gi|118094101|ref|XP_423459.2| PREDICTED: similar to phosphodiesterase 4D interacting protein
           [Gallus gallus]
          Length = 1394

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 55/370 (14%), Positives = 117/370 (31%), Gaps = 20/370 (5%)

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH-LIP 344
           L         + LG  L   +L+ LW       +             K   L       P
Sbjct: 263 LNADRKSFSRAPLGLPLEIPELQELWDDFCEDYMPLRVQPRVAEPRAKNSQLNEHQKPAP 322

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT------P 398
           G+  +    +     +   +        +L+ E L  ++   K   E             
Sbjct: 323 GDSASRECTADLCATEPQGKIQQFEDTNQLLQEKLNELNFELKSARETSQRQDLTIQSLN 382

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           +     E   +   + I+ Q       Q +  R  QL Q  ++E +   +  +       
Sbjct: 383 EALKSKESETEELYHVIEGQNETMAKLQDMLHR-SQLGQLQMSESAPSSQEQQVALLDLQ 441

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
               S +L    L + +  K+  L EA     L+     + E+ Q+       N EL+ +
Sbjct: 442 NTLFSTQLEVQKLKRAQRQKEHQLVEAKRAAQLLE--TTVHEEEQQKEATWKHNQELRAV 499

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
              L     + +     +  Q +      EL  Q +++V+      A  E  + + R+  
Sbjct: 500 VQQL-----QVELQDKAQQIQAMEWEKCRELQAQ-EQRVQCLSQHLARKEQLLQESRELL 553

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           Q   +L +    +    E++++++    +  +A     +      +  +  +++     I
Sbjct: 554 QCQQSLGRSSAAMDAMLEKLQQRV----SDRDAALERAVDEKFCALEEKEQELQQLRLSI 609

Query: 639 EGFGKMSGRL 648
           +  G    RL
Sbjct: 610 KERGGDLERL 619


>gi|89365957|gb|AAI14430.1| Eukaryotic translation initiation factor 3, subunit A [Homo
           sapiens]
          Length = 1382

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|313837450|gb|EFS75164.1| DivIVA domain protein [Propionibacterium acnes HL037PA2]
 gi|314929340|gb|EFS93171.1| DivIVA domain protein [Propionibacterium acnes HL044PA1]
 gi|314971657|gb|EFT15755.1| DivIVA domain protein [Propionibacterium acnes HL037PA3]
 gi|328907004|gb|EGG26770.1| putative immunogenic protein antigen 84 [Propionibacterium sp. P08]
          Length = 361

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 3/145 (2%)

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              I     + +       +  +N  L+     L S    ++    + I+          
Sbjct: 23  YRAIEVDDFVDKVEAAFMTLTDENERLKAQVEALKSGEPGEQKPDQDLIN---ENEHLRA 79

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            ++ L  Q  D  + S   +      R+   +A  L +    L  Q EE+ +   +    
Sbjct: 80  QVETLRSQRNDRSVDSGEADRAKTAQREAENRAHQLEREKASLLSQVEELRRAAQRPGQN 139

Query: 609 GEAEKTAILISILHEVHIQIHQIES 633
            +  + A L S    +  Q+   ++
Sbjct: 140 IDPAEVARLRSENERLGAQLRDAQA 164


>gi|297286562|ref|XP_001103945.2| PREDICTED: leucine-, glutamate- and lysine-rich protein 1-like
           [Macaca mulatta]
          Length = 693

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 33/301 (10%), Positives = 94/301 (31%), Gaps = 28/301 (9%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R     A  + I + LP   +           +      E    ++  +   +    R  
Sbjct: 3   RHIPVHALPEEIQKMLPEEKVCKYCGISYLILHEFKAMEEKVKAMEKEMKFYQGSVDREK 62

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             Q     L Q  ++Y  +                 +    + ++  L   +   K   R
Sbjct: 63  RLQEKLHSLNQELEQYKIDSKSKTERIYDVGMQLKNQQNEFQKVEKQLSHLQDELKIKYR 122

Query: 484 EAALL-LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--R 540
           ++ +    L  +     +    L+ + +   EL  + + ++ ++        E   Q   
Sbjct: 123 QSYIFSQRLSEYKYFWNK---TLSLLTFTKRELTSIKNEVYDNYQNWTSLKGEIFLQIKS 179

Query: 541 LCERGFGEL--LKQ-----------LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           + E    E+  L +           L++++++  L S         ++   QQ + L  R
Sbjct: 180 ISETALTEIDILNKSLIVSQRNKVCLEKEMKNLKLLSDAAILRSQQIQTSRQQEVNLQTR 239

Query: 588 FRLLSRQKEEIE-------KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMI 638
              L ++  +++        ++ +   + +   E      +   +   ++ +++ +  + 
Sbjct: 240 CYDLEQEVLDLQCLVEALGVKLQKAVTEMDNYKEMLMNKSNEADDCQRELRKLKFESVIS 299

Query: 639 E 639
           E
Sbjct: 300 E 300


>gi|227544386|ref|ZP_03974435.1| DNA repair protein RecN [Lactobacillus reuteri CF48-3A]
 gi|300909753|ref|ZP_07127214.1| DNA repair protein RecN [Lactobacillus reuteri SD2112]
 gi|227185649|gb|EEI65720.1| DNA repair protein RecN [Lactobacillus reuteri CF48-3A]
 gi|300893618|gb|EFK86977.1| DNA repair protein RecN [Lactobacillus reuteri SD2112]
          Length = 559

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 28/275 (10%), Positives = 77/275 (28%), Gaps = 15/275 (5%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK-LRYYYSQAI 428
             +        +         +  +        +         + +K     +    Q  
Sbjct: 127 DIQGQNEHQQLMQPETHLGMLDQFAAKEVQPLLQKYQEEYQAYSKLKAAVNKKQANEQQW 186

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             RL  L  +         +  +++    ++         ++ ++  ++      +A +L
Sbjct: 187 AQRLDMLRYQVNEIAEANLKENEEDELISERDRLEHFQQINNALQLAVTTFNEGEQAPVL 246

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                    +      +  I   ++    L   L   +   +    E   Q        E
Sbjct: 247 -------DQVATVMDSINAIAEFDDAYDNLSKALNDAYYALQDVANEASQQLDMLEFDDE 299

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-------LSRQKEEIEKQ 601
            L Q+++++   G         + DV + Y +                 L ++  E E +
Sbjct: 300 RLAQIEQRLTTIGDLEHKYGDTLADVLKYYDKIKKELDSMEAAADSSSDLEQRLGEAENK 359

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           I +   K    +      +  +VH Q+ ++  ++A
Sbjct: 360 IRETGRKLSQVRQKAAHELGKKVHQQLKELYMEKA 394


>gi|149641547|ref|XP_001510329.1| PREDICTED: similar to centromere protein F, 350/400ka (mitosin)
            [Ornithorhynchus anatinus]
          Length = 2965

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 56/146 (38%), Gaps = 6/146 (4%)

Query: 500  EQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCERG--FGELLKQLDR 555
            E+ +  A +     E+ ++ + +      +E      + I  +L E       L  +++ 
Sbjct: 2119 EKGEIAARLNSTQEEVHQMRNGIEKLKMHIEADEKEKQHITGKLKESERKADSLQDKIEA 2178

Query: 556  QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA--QVTAKGEAEK 613
              R   +     EA I+D      +A  L  +   L+ + + +E +    ++  +   E+
Sbjct: 2179 LERQLQMAEENQEAMILDAETAKMEAETLKTKIEELTGRLQGLELEFGALRLEKENVIEE 2238

Query: 614  TAILISILHEVHIQIHQIESQEAMIE 639
               +   L E   ++ ++ES  +  E
Sbjct: 2239 KETIAKDLQEKQDRMSELESCNSSFE 2264


>gi|119617138|gb|EAW96732.1| calcium binding and coiled-coil domain 1, isoform CRA_f [Homo
           sapiens]
          Length = 516

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 70/239 (29%), Gaps = 21/239 (8%)

Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
              +    + I+    +    +   DRL+   +    E        K+    ++Q     
Sbjct: 104 VARILELEDDIQTISEKVLTKEVELDRLRDTVKALTREQEKLLGQLKEVQADKEQSEAEL 163

Query: 465 RLMQSSLVKGKLSKKPSLREAALL------LTLINHPAILQEQYQELADIRYDNNELQKL 518
             ++  L   +     S ++A LL              I +     L      N  L +L
Sbjct: 164 EPLKEQLRGAQELAASSQQKATLLGEELASAAAARDRTIAELHRSRLEVAE-VNGRLAEL 222

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAGLWSATTEANIVD 573
              L  +   Q       + Q +             + +L++ V++    +   +  +  
Sbjct: 223 GLHLKEE-KCQWSKERAGLLQSVEAEKDKILKLSAEILRLEKAVQEERTQNQVFKTELAR 281

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQ 630
            +           +     R+  E+   +   Q   +   E+   L+  + ++  ++ +
Sbjct: 282 EKDS------SLVQLSESKRELTELRSALRVLQKEKEQLQEEKQELLEYMRKLEARLEK 334


>gi|154249899|ref|YP_001410724.1| chromosome segregation protein SMC [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153835|gb|ABS61067.1| chromosome segregation protein SMC [Fervidobacterium nodosum
           Rt17-B1]
          Length = 1164

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 87/262 (33%), Gaps = 24/262 (9%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRY----YYSQAIRDRLQQLFQKYITEHSG 445
            E    N  DE  ++++ +++    +++ K R        +    +L +L  KYI   + 
Sbjct: 258 LEMEWSNLKDEFNQIDVEMESYTKTLEEFKTRENQLLEIKEKFSKKLSELENKYIEITTR 317

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                ++    +++    + ++   L +  +  K  S  E         +    +E  ++
Sbjct: 318 VDMLNEETNTLKNRNEEIKLILAKILEELNEKEKVLSELEDEKSKIFTQYTEQEKEILKK 377

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
             +       L K+ + +       +                     +L+          
Sbjct: 378 KQEYEEIEKNLSKIHNEIIRLNENNQDIK-----------------HRLEMIQSQRVNKE 420

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--KTAILISILH 622
              +    ++    +  L + ++   L ++ E I+  I +   K E +      L+    
Sbjct: 421 DRKQELEDEISDLEKHLLDIVEKENELVKELESIKSSIEEYRKKKEEKSLLLEKLVKREK 480

Query: 623 EVHIQIHQIESQEAMIEGFGKM 644
           EV  +I  I+ Q +  +GFG  
Sbjct: 481 EVKAEIDVIKRQISEYQGFGHS 502


>gi|86607238|ref|YP_476001.1| DNA repair protein RecN [Synechococcus sp. JA-3-3Ab]
 gi|86555780|gb|ABD00738.1| DNA repair protein RecN [Synechococcus sp. JA-3-3Ab]
          Length = 568

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 73/252 (28%), Gaps = 31/252 (12%)

Query: 401 RAELEIHLKNCINHIKDQKLR-------YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                       +  ++Q LR          +Q +     +   +         R   + 
Sbjct: 165 YQTWSQLKAEIASRQQNQHLRLQRLDLLELQAQELAALRLEDPDELTKLERERERLAHRV 224

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
              +      Q L Q+      ++   +  E  L       P +        + +     
Sbjct: 225 ELQQQSYAAHQLLYQNDSGSPAIADLLAQAERLLQSMAQRDPDLTPLVEMVSSALVQVEE 284

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
             ++L       + E     P  +              +++R++             + +
Sbjct: 285 AGRELLR-----YGETLEADPSRL-------------SKIERRLAQLRQACRKYGPTLAE 326

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           V    ++  A   + R  S   EE+E ++ Q   +   E+   ++S L +        + 
Sbjct: 327 VMAHAERLKAELAQLRDESTDLEELEARLDQAAQEL--ERHCQMLSHLRQQVAH----QL 380

Query: 634 QEAMIEGFGKMS 645
           ++A++E  G + 
Sbjct: 381 EKALVEELGPLG 392


>gi|78060767|ref|YP_367342.1| GntR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965317|gb|ABB06698.1| transcriptional regulator, GntR family [Burkholderia sp. 383]
          Length = 248

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 53/144 (36%), Gaps = 15/144 (10%)

Query: 510 YDNNELQKLWSFLFS------------DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
             +   + L+  +                 E+       I + L E     +++   R+ 
Sbjct: 33  LSSKIYRLLFDEIIDGTLEPGQKLEEIALAERFNASRTPIREALRELAARGMVELTPRKG 92

Query: 558 RDAGLWSATTEANIVDV---RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                +S    A++++     +     L+  +   +  +Q EE++ ++ +  A+G+  + 
Sbjct: 93  VVVAQFSLDELADMLEAMCELEALCCRLSAQRMSVVEKKQLEELQVEMNEAIARGDEAEY 152

Query: 615 AILISILHEVHIQIHQIESQEAMI 638
             L    HE+  +  Q +S  ++I
Sbjct: 153 FQLNREFHELICKGAQSKSLASII 176


>gi|153792649|ref|NP_001093105.1| myosin-3 [Mus musculus]
 gi|122065566|sp|P13541|MYH3_MOUSE RecName: Full=Myosin-3; AltName: Full=Myosin heavy chain 3
 gi|58864905|emb|CAI24992.2| myosin, heavy polypeptide 3, skeletal muscle, embryonic [Mus
            musculus]
 gi|58864908|emb|CAI25982.2| myosin, heavy polypeptide 3, skeletal muscle, embryonic [Mus
            musculus]
          Length = 1940

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 73/215 (33%), Gaps = 13/215 (6%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             ++ +++    +   + S   R   +  +H        +  Q  L    L  +  L+E  
Sbjct: 1614 RLKKKMEGDLNEIEIQLSHANRQAAETIKHLRSVQGQLKDTQLHLDDA-LRGQEDLKEQ- 1671

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLW-SFLFS-----DFVEQKYFLPEEIHQR 540
             L  +     +LQ + +EL          +KL    L         +  +        ++
Sbjct: 1672 -LAIVERRANLLQAEVEELRATLEQTERARKLAEQELLDSNERVQLLHTQNTSLIHTKKK 1730

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            L E    +L  +++   RDA       +  I D     ++          L R K+ +E+
Sbjct: 1731 L-ETDLTQLQSEVEDACRDARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQ 1789

Query: 601  QIAQVTAKGEAEKTAIL---ISILHEVHIQIHQIE 632
             +  +  + +  +   L      + ++  +I ++E
Sbjct: 1790 TVKDLQHRLDEAEQLALKGGKKQIQKLETRIRELE 1824


>gi|118580982|ref|YP_902232.1| SMC domain-containing protein [Pelobacter propionicus DSM 2379]
 gi|118503692|gb|ABL00175.1| SMC domain protein [Pelobacter propionicus DSM 2379]
          Length = 1230

 Score = 40.6 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 75/229 (32%), Gaps = 17/229 (7%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +D  +R+  ++ + +R +        +        ++    R+Q+       + +LV+ +
Sbjct: 812  RDAYVRHLRARDLLERGRTECAAEGEKQRALLAETERALCDREQQLREMTAHRGALVEQR 871

Query: 476  LSK----KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF------SD 525
            L +     P   E  L   L       + + Q L +     +EL  L   +         
Sbjct: 872  LERYGERDPDKEEKRLADAL---RQADKRREQALREQSRLQDELGGLKQQIERMTSSRDR 928

Query: 526  FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
              E+          +L E GF +    L         +   T       R        L 
Sbjct: 929  RGEEISRREAAFLAQLQESGFSDETAYL-HACLPQERFDELTRWADELARDETSITTRLR 987

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             R   L R   E E+ +   + +   E+ A L S L E+  ++  I+ Q
Sbjct: 988  DRQETLRR---ETERNLTAKSLEQIHEEHAALASQLGELQKELGAIDQQ 1033


>gi|307190724|gb|EFN74639.1| Myosin heavy chain, muscle [Camponotus floridanus]
          Length = 1141

 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 81/260 (31%), Gaps = 15/260 (5%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 751  DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 810

Query: 443  HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            +       K   R++ Q K     L +    + +  +   + E           A+  E 
Sbjct: 811  NKANAEAQKNIKRYQQQLKDVQTALEEEQRARDEARELLGISER-------RANALQNEL 863

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557
             +    +   +   ++    L     +      +       +R  E     L   LD  +
Sbjct: 864  EESRTLLEQADRGRRQAEQELADCHEQLNELSAQNASISGAKRKLEAELQTLHSDLDELL 923

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
             +A       +  +VD  +   +  A     +   + ++ +E QI ++  + +  +   L
Sbjct: 924  NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQVRLDEAEANAL 983

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  + ++  ++ ++E++
Sbjct: 984  KGGKKAIQKLEQRVRELENE 1003



 Score = 37.6 bits (85), Expect = 6.1,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 67/225 (29%), Gaps = 12/225 (5%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + + D ++ L  +            K   R   +K   Q  ++ +    +  +   LR  
Sbjct: 681 KNLADEVKDLLDQIGEGGRNIHEIEKARKRLEAEKDELQAALEEAEAALEQEENKVLRSQ 740

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L  +     I +   ++  +        Q+    + +    +     E +  +     
Sbjct: 741 LELSQV--RQEIDRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEA 798

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK--------EE 597
               L+        A   +           +  Q AL   +R R  +R+           
Sbjct: 799 DINELEIALDHANKANAEAQKNIKRYQQQLKDVQTALEEEQRARDEARELLGISERRANA 858

Query: 598 IEKQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQEAMIEG 640
           ++ ++ +     E            L + H Q++++ +Q A I G
Sbjct: 859 LQNELEESRTLLEQADRGRRQAEQELADCHEQLNELSAQNASISG 903



 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 69/221 (31%), Gaps = 13/221 (5%)

Query: 428  IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP--SQRLMQSSLVKGKLSKKPSLREA 485
            I +R     Q  + E         +  R  +Q+     ++L + S     +S      EA
Sbjct: 851  ISERRANALQNELEESRTLLEQADRGRRQAEQELADCHEQLNELSAQNASISGAKRKLEA 910

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L     +   +L E        +    +  +L   L     +      E++ + L  + 
Sbjct: 911  ELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADEL--RAEQDHAQTQEKLRKALETQI 968

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
                ++  + +           +     VR+   +     +R     +   + E++I ++
Sbjct: 969  KELQVRLDEAEANALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKSERRIKEL 1028

Query: 606  TAKGEAEK---------TAILISILHEVHIQIHQIESQEAM 637
            + + + ++            L   +     QI + E   A+
Sbjct: 1029 SFQADEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL 1069


>gi|299143895|ref|ZP_07036975.1| hypothetical protein HMPREF0629_00759 [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518380|gb|EFI42119.1| hypothetical protein HMPREF0629_00759 [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 772

 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 48/137 (35%), Gaps = 8/137 (5%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           +++ +++  + + + L              +   L E     + ++   +     L S  
Sbjct: 149 NLKINSDSYESIRNELEKFANAGDEKYDANLAISLLEEKLKTIGRESISKSEIGVLNSKV 208

Query: 567 T--EANIVDVRQGYQQALALYKRFRLLSRQKEE------IEKQIAQVTAKGEAEKTAILI 618
               A +++      + L L +R + + R+ +       IE+++++             +
Sbjct: 209 NRLNAKLLEYDGAEDEYLKLKEREKSIDREIDSSKKNISIERELSEQADYNNIISMTEEL 268

Query: 619 SILHEVHIQIHQIESQE 635
             L E+      I ++E
Sbjct: 269 KHLKELQKNNSGISAEE 285


>gi|297693154|ref|XP_002823892.1| PREDICTED: LOW QUALITY PROTEIN: citron Rho-interacting kinase-like
           [Pongo abelii]
          Length = 2056

 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 100/298 (33%), Gaps = 38/298 (12%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420
             +   +   EKL         +  K        ++ + + +    ++   N +KD    
Sbjct: 651 QAKERAERELEKLQNREDSSEGIRKKLVEAEERRHSLENKVKRLETMERRENRLKDDIQT 710

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+        ++ + +    DQ    +  +  + +K  L+ K 
Sbjct: 711 KSQQIQQMADKILELEEKHRF-FEVSAQHLEVHLPFYDQHYEEKIKVLDNQIKKDLADKE 769

Query: 481 SLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           +L        +  H     E+ + L++    I   +++++ L   +       K      
Sbjct: 770 TLE-----NMMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANSS 824

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALALY 585
           +  +   +   E++ +L +Q       +   EA    + +  +           + L L 
Sbjct: 825 LFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKNRLLELE 884

Query: 586 KRFRL-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            R R            L RQ  E++  + +  +     +   L +    +  Q+ Q +
Sbjct: 885 TRLREVSLEHEEQKLELKRQLTELQLSLQERES-----QLTALQAARAALESQLRQAK 937


>gi|297664417|ref|XP_002810644.1| PREDICTED: coiled-coil domain-containing protein 18-like [Pongo
            abelii]
          Length = 1299

 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 23/253 (9%), Positives = 86/253 (33%), Gaps = 4/253 (1%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            R+ +       +E +++E  + +     +++ +       + D+ +   +K         
Sbjct: 868  RQVKVEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMMLDQTKTELEKKTNAVKELE 927

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            +   +      +    + ++++ L       K +LR+   L  ++    +  E  ++   
Sbjct: 928  KLQHRTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTT 985

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            I+    EL++    +     E          +    +     +  LD  +R+        
Sbjct: 986  IKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1045

Query: 568  EANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
               +   + +   +     K+   L+ + +  ++Q+ +        +   +  +  E+  
Sbjct: 1046 IIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNE-QEISQLKKEIER 1104

Query: 627  QIHQIESQEAMIE 639
               +++  E++++
Sbjct: 1105 TQQRMKEMESVMK 1117


>gi|290889986|ref|ZP_06553071.1| hypothetical protein AWRIB429_0461 [Oenococcus oeni AWRIB429]
 gi|290480333|gb|EFD88972.1| hypothetical protein AWRIB429_0461 [Oenococcus oeni AWRIB429]
          Length = 823

 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 46/149 (30%), Gaps = 8/149 (5%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           I     L+ ++  +        +  ++   L   + E            + +      +K
Sbjct: 330 IESDQALERRFASVTIDEPSQEDSVEILKGLRPRYEEHHRVN-------ISDEAINAAVK 382

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
              R + D  L     +       +     +    +   L RQ   +  Q+    + G+ 
Sbjct: 383 LSSRYIADRFLPDKAIDLMDEAAAKVRIDTVQPEDKKVDLERQLNGLRDQLDDAVSSGDF 442

Query: 612 EKTAILISILHEVHIQIHQIESQEAMIEG 640
           ++   +     ++  ++  +E  + +I G
Sbjct: 443 DQATKIRQQEIKIRKELAVVE-TDNLING 470


>gi|290998806|ref|XP_002681971.1| predicted protein [Naegleria gruberi]
 gi|284095597|gb|EFC49227.1| predicted protein [Naegleria gruberi]
          Length = 1571

 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 29/278 (10%), Positives = 82/278 (29%), Gaps = 20/278 (7%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
            F+K + E++   D    ++             ++E + ++    ++ + LR   SQ + +
Sbjct: 728  FKKKMEEAISKKDFRMMKDI-FSKALRAGLAGDVEKYKRDYDADVQKEYLRDLVSQHLAN 786

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQK----GPSQRLMQSSLVKGKLSKKPSLREAA 486
            R     +  + +    G   +K  +             ++ +        +      E  
Sbjct: 787  RDGDALRLILIDAKSLGVENEKIFQEAKNSVLLFKEETKIKRRLNKGVDDANDIGNIEK- 845

Query: 487  LLLTLINHPAILQEQYQELA---DIRYDNNELQKL---WSFLFSDFVEQKYFLPEEIHQR 540
             L  LI            ++    I + N E  ++   +S +              I + 
Sbjct: 846  -LRELIKDAKAFVSTNPSISLSNTIDFCNKECDRIQQRFSIIEKIDEAIMKRDKSAIDEI 904

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTE---ANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +      + L           + +   +   A I  + +     + LY        + + 
Sbjct: 905  IESNKLDDRLDLTKAYECLDHINTDREQEQLAAIYKLEETLDSLIVLYDHETTPDNEIK- 963

Query: 598  IEKQIAQVT---AKGEAEKTAILISILHEVHIQIHQIE 632
            + + I +       G+   +A  +     +  +  + +
Sbjct: 964  LMQIIVEAEMFVELGDLVDSAKNLIQKKRMEAKRKERK 1001


>gi|164427657|ref|XP_963992.2| hypothetical protein NCU02858 [Neurospora crassa OR74A]
 gi|157071832|gb|EAA34756.2| predicted protein [Neurospora crassa OR74A]
          Length = 2524

 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 33/326 (10%), Positives = 98/326 (30%), Gaps = 19/326 (5%)

Query: 323  GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382
            G+      A    D         ++    +      P + +          +  +    V
Sbjct: 1452 GNSADQTQAEVPTDNKPQLEPTSSKTKQDVGPEAT-PATKMDDKKVEETLYVPPQHQETV 1510

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + +         +     +   +       ++  R    +   +R Q   +K   +
Sbjct: 1511 DTKAQEDQLKAQKVETERLEHEKAEQERVAREKAERAEREKAEREKAEREQVALEKAREK 1570

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP----SLREAALLLTLINHPAIL 498
                    +K  R + ++   +R      ++ +   +        E   +          
Sbjct: 1571 AEQEKAEREKAEREKAERERVEREKAREKLEQERIAREKAELEKAERERIAA-----EEA 1625

Query: 499  QEQYQELADIRYDNNELQKLWS--FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            +++ + L     +  E +++ +        +E+      E+ +   ER   E  ++   Q
Sbjct: 1626 RKKAE-LEKAELEKAERERIAAEKARKKAELEKAELEKAELEKAERERVAAEKARKKAEQ 1684

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRL--LSRQKEEIEKQIAQ----VTAKGE 610
             +         +A    +++  +Q     K+       R+K ++EK   +      A+ +
Sbjct: 1685 EKAEQERVEREKAQEKALQEKAEQERIARKKAEQEKAERRKADLEKAERERVALEEARKK 1744

Query: 611  AEKTAILISILHEVHIQIHQIESQEA 636
            AE+       +     ++ + + ++A
Sbjct: 1745 AEEEKAEQKRISRKKAELEKAKQEKA 1770


>gi|149412812|ref|XP_001510817.1| PREDICTED: similar to KIAA0799 protein [Ornithorhynchus anatinus]
          Length = 2096

 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            ELL Q   + R      A  +       +   +     K+   + R ++EIE  + ++ 
Sbjct: 871 AELLAQQAEEARKQQELEALEKVQKEAELKRELEKQKENKQVEEILRLEKEIE-DLQRMK 929

Query: 607 AKGEAEKTAILISILHEVH-IQIHQIESQ 634
            + E   T   +  L ++   ++ ++E +
Sbjct: 930 EQQELSLTEASLQRLQQLRDEELKRLEDE 958


>gi|41322914|ref|NP_958785.1| plectin isoform 1g [Homo sapiens]
 gi|40849942|gb|AAR95683.1| plectin 10 [Homo sapiens]
          Length = 4551

 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 55/193 (28%), Gaps = 23/193 (11%)

Query: 457  RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
            R ++     + +      +  ++ +  E  L    +          +        + ELQ
Sbjct: 2162 RQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ-------LEETDHQKNLLDEELQ 2214

Query: 517  KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT--------- 567
            +L +       ++     E    R+      +L  +++ + R   L              
Sbjct: 2215 RLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEA 2274

Query: 568  ----EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
                +      R       A   R      L++Q+   EK + +     +        + 
Sbjct: 2275 EKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAE 2334

Query: 621  LHEVHIQIHQIES 633
            L +   ++ Q ++
Sbjct: 2335 LLQQQKELAQEQA 2347



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1682 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1741

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1742 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1779



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 19/212 (8%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
               LQQ  Q+ +          ++  R   ++    R    + ++ K  +     E + L
Sbjct: 1394 AKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQA-EAAERSRL 1452

Query: 489  LTLINHPAILQEQYQELADIRY----DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                     ++    +L            ELQ L +       +++    E   +RL  +
Sbjct: 1453 RI----EEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEA--ERLRRQ 1506

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E  ++   +V  A    A  EA     R          +    L  Q EE E+++ Q
Sbjct: 1507 VQDESQRKRQAEVELASRVKAEAEAAREKQRA--------LQALEELRLQAEEAERRLRQ 1558

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +   +    L +       ++    +  A
Sbjct: 1559 AEVERARQVQVALETAQRSAEAELQSKRASFA 1590



 Score = 37.6 bits (85), Expect = 6.3,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 78/268 (29%), Gaps = 23/268 (8%)

Query: 392  NRSFNTPDERAELEIHLKNCINHIK------DQKLRYYYSQAIR-----DRLQQLFQKYI 440
                 + D         +     I+       Q +R    Q        +R  +  ++  
Sbjct: 1214 RYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALLEEIERHGEKVEECQ 1273

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                 Y    K               + S   K K+           +    ++  +   
Sbjct: 1274 RFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTHYSELTTL 1333

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              Q +   ++ +  L+++         +Q+    E + +          L +   Q +  
Sbjct: 1334 TSQYI---KFISETLRRMEEE-ERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQ 1389

Query: 561  GLWSATT--EANIVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEAEKT 614
                A    +    +V +  + A+   ++ R +  + +++    E +I     + EA + 
Sbjct: 1390 AEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQAEAAER 1449

Query: 615  AILI--SILHEVHIQIHQIESQEAMIEG 640
            + L     +  V +Q+   E Q    EG
Sbjct: 1450 SRLRIEEEIRVVRLQLEATERQRGGAEG 1477


>gi|50542914|ref|XP_499623.1| YALI0A00616p [Yarrowia lipolytica]
 gi|49645488|emb|CAG83543.1| YALI0A00616p [Yarrowia lipolytica]
          Length = 1189

 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 45/134 (33%), Gaps = 15/134 (11%)

Query: 507 DIRYDNNELQKLWSFLFSD--FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
           D    + EL+ + + L       +           ++ E+    ++ +++ ++  +    
Sbjct: 226 DFALQDRELKAVETALVELQDMDDGGASDRAARLAKIEEQDL--VISEVEAEIETSSRAR 283

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
              +      R    Q          L R K  +E ++A+        +   L     ++
Sbjct: 284 EHADLAASHARDDVAQ----------LRRLKASLEVELAETNRIHGTLQHEELSRE-QQL 332

Query: 625 HIQIHQIESQEAMI 638
                +IES+E+ +
Sbjct: 333 QRVQGEIESKESSL 346


>gi|40788877|dbj|BAA09488.2| KIAA0139 [Homo sapiens]
          Length = 1388

 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 523 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 580

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 581 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 622


>gi|268571487|ref|XP_002641061.1| Hypothetical protein CBG22473 [Caenorhabditis briggsae]
          Length = 1121

 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 28/286 (9%), Positives = 84/286 (29%), Gaps = 33/286 (11%)

Query: 379 LPLVDMLWKRETENRSFNTPDERAEL--EIHLKNCINHIKDQKLRYY------------Y 424
           +P  +       E       + +  L      +   N ++D   +              Y
Sbjct: 572 MPNHEPELLALREQVQHLQNELQTSLNQRRDFEIHYNQLRDAAEQKESTIAQLNETANDY 631

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + ++    ++        +      +       ++  +    Q    + +   +    E
Sbjct: 632 KERLQKASDEIQDWARQLDTTRAELNELQQTAYGRQQEAIERRQQEGDEYEQKIQELTSE 691

Query: 485 AALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ---- 539
              L   I +     +   ++L + R  N+ LQ     L ++    K             
Sbjct: 692 KKALAGRIQNLEEDFERVQRQLEEERELNSGLQGSVQRLETELEASKNANDAAESGGSGW 751

Query: 540 ----RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                + +    + L+++     +       T+  +  ++   +Q+     R+R L  ++
Sbjct: 752 SDCGDIEDVEKEKDLQKVLEDDENLQKAQKETQEELSRLKLKLEQSEKEATRYRNLYERQ 811

Query: 596 EE--------IEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQI 631
            E        IE ++     + +  +     L     E+  +++++
Sbjct: 812 NETESRGAIEIELKLKNAENEIQEARRKIEELSGEKKELGDRLNEM 857


>gi|4503509|ref|NP_003741.1| eukaryotic translation initiation factor 3 subunit A [Homo sapiens]
 gi|6685537|sp|Q14152|EIF3A_HUMAN RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 subunit 10; AltName:
           Full=eIF-3-theta; AltName: Full=eIF3 p167; AltName:
           Full=eIF3 p180; AltName: Full=eIF3 p185
 gi|1808985|gb|AAB41584.1| p167 [Homo sapiens]
 gi|2501783|gb|AAB80695.1| translation initiation factor 3 large subunit [Homo sapiens]
 gi|55958708|emb|CAI14127.1| eukaryotic translation initiation factor 3, subunit 10 theta,
           150/170kDa [Homo sapiens]
 gi|119569793|gb|EAW49408.1| eukaryotic translation initiation factor 3, subunit 10 theta,
           150/170kDa [Homo sapiens]
 gi|168274396|dbj|BAG09618.1| eukaryotic translation initiation factor 3 subunit 10 [synthetic
           construct]
          Length = 1382

 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|71746100|ref|XP_827623.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70831788|gb|EAN77293.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 660

 Score = 40.6 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 79/253 (31%), Gaps = 23/253 (9%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
           P V        + +         EL    +     +K  + R        +RL       
Sbjct: 120 PDVRSDVYHGIKAKISALQFSNDELRAENEELKERVKMARERE------AERLGSQEAAA 173

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
             E  G  +  ++  R+ ++     +  +S L +   S    LR+               
Sbjct: 174 RNELEGLRKKLRETERNYERVVQEFQRERSQLTQAVESVTSQLRQEM------------S 221

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
            + +E+A +   N       + L + +  Q+    E+      +R     L+ L+  +  
Sbjct: 222 RREEEIARLESANATA---IAQLKTRWQAQEKAAREKWRIAEAKRIKENTLQSLEPDIVL 278

Query: 560 AGLWSATTEANIVDVRQGYQQALALYK--RFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
                   +A + +  +   +        +   L   +  +E++ +   A+ + E    L
Sbjct: 279 LLNRHKAEKARMREEFENELRQRDEVIAAKEATLEESRARLEREASATRAREQQEFRDRL 338

Query: 618 ISILHEVHIQIHQ 630
              +  V+ Q+ +
Sbjct: 339 KEEMDRVNRQLEE 351


>gi|332251698|ref|XP_003274983.1| PREDICTED: ankycorbin isoform 2 [Nomascus leucogenys]
          Length = 951

 Score = 40.6 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 102/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 565 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 622

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L+
Sbjct: 623 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLK 682

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 683 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 741

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 742 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 801

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 802 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 839


>gi|324509160|gb|ADY43855.1| Intraflagellar transport protein 74 [Ascaris suum]
          Length = 621

 Score = 40.6 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 74/215 (34%), Gaps = 10/215 (4%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             RL    Q     +       K N+   + +   + L +  L +  L+      E    
Sbjct: 114 SSRLAINRQVLDKSYYVSLLRQKTNSLLLETETLKKELDRGELNRQNLTIYEKRAEEE-- 171

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
            ++I            + D    N +L +L   L     + +             +   E
Sbjct: 172 ASIIRDLQGALVDCNMIIDRLNTNTDLDELKEELNELIAKNEEAEKSLNELFADRQRIEE 231

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS----RQKEEIEKQIAQ 604
             + ++RQ+    +  A   A + ++    ++     KR  +L     R KEE    + +
Sbjct: 232 ETRDVERQI---EVEKAKNMAALSELDVHVREQFEELKREAVLLDEEYRMKEEQLAALNR 288

Query: 605 VTAKGEAE-KTAILISILHEVHIQIHQIESQEAMI 638
              + + E  ++ L      +H ++ ++ES++A I
Sbjct: 289 RKEQLDDEVASSSLKQQAMILHERLAEMESKKAAI 323


>gi|296221332|ref|XP_002756681.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A
           isoform 2 [Callithrix jacchus]
          Length = 1354

 Score = 40.6 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|291392677|ref|XP_002712869.1| PREDICTED: EF-hand calcium binding domain 4B [Oryctolagus
           cuniculus]
          Length = 726

 Score = 40.6 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 2/148 (1%)

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             L +    L   + +L +   + NEL+ +     + + E+   L EE+ Q++       
Sbjct: 188 RLLSSFEDFLSSIFSQLQEAHEEKNELECILQKKIAAYDEEIQHLYEEMEQQIRSEKEQF 247

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE--IEKQIAQVT 606
           LLK  +R    +            ++ Q  Q+   L  +   L   K E   E    +++
Sbjct: 248 LLKDTERFQARSQELERKLFCKEQELEQLIQKQKRLEGQCAALHNDKHETTAENTKLKLS 307

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
            +  A +       L +   Q+  ++ +
Sbjct: 308 NQELARELERTSRELADAQQQLEGLQRE 335


>gi|237715493|ref|ZP_04545974.1| hypothetical protein BSAG_01704 [Bacteroides sp. D1]
 gi|237721750|ref|ZP_04552231.1| predicted protein [Bacteroides sp. 2_2_4]
 gi|260642144|ref|ZP_05859266.1| putative mobilizable transposon, excision protein [Bacteroides
          finegoldii DSM 17565]
 gi|262408501|ref|ZP_06085047.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|293373353|ref|ZP_06619711.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|294646537|ref|ZP_06724174.1| hypothetical protein CW1_1572 [Bacteroides ovatus SD CC 2a]
 gi|294807567|ref|ZP_06766364.1| hypothetical protein CW3_2431 [Bacteroides xylanisolvens SD CC
          1b]
 gi|229444202|gb|EEO49993.1| hypothetical protein BSAG_01704 [Bacteroides sp. D1]
 gi|229448619|gb|EEO54410.1| predicted protein [Bacteroides sp. 2_2_4]
 gi|260623347|gb|EEX46218.1| putative mobilizable transposon, excision protein [Bacteroides
          finegoldii DSM 17565]
 gi|262353366|gb|EEZ02460.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292631749|gb|EFF50369.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292638156|gb|EFF56537.1| hypothetical protein CW1_1572 [Bacteroides ovatus SD CC 2a]
 gi|294445268|gb|EFG13938.1| hypothetical protein CW3_2431 [Bacteroides xylanisolvens SD CC
          1b]
          Length = 52

 Score = 40.6 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 27 WDRRKTNA---VKGDYWACCPFHDEKTPSFHCNDSKGF 61
            R   N         W C PF +EKTPSF  + S+  
Sbjct: 15 LRRMGFNPVKQQGDSIWYCSPFREEKTPSFKVSASRNL 52


>gi|254384533|ref|ZP_04999873.1| chaperone protein clpB [Streptomyces sp. Mg1]
 gi|194343418|gb|EDX24384.1| chaperone protein clpB [Streptomyces sp. Mg1]
          Length = 861

 Score = 40.6 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 9/117 (7%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-----LKQLDRQVRDAG 561
            I   +    +L   + S  +E           R+ E           L++LD+  +D  
Sbjct: 392 AIDLVDEAASRLRMEIDSSPLEIDELQRAVDRLRMEELALKNESDPASLERLDKLRKDL- 450

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
              A  E ++  +   +++      R   L  + +++  Q  +    G+ +  + L+
Sbjct: 451 ---ADKEEDLRGLTARWEKEKQSLNRVGELKERLDDLRGQAERAQRDGDFDAASKLL 504


>gi|297687473|ref|XP_002821237.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           A-like isoform 1 [Pongo abelii]
          Length = 1392

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|294619909|ref|ZP_06699285.1| hypothetical protein EfmE1679_2650 [Enterococcus faecium E1679]
 gi|291593846|gb|EFF25344.1| hypothetical protein EfmE1679_2650 [Enterococcus faecium E1679]
          Length = 665

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 43  CPFHDEKTPSFHCNDSK---GFYYCFS--CHVKGDHLSFLSAL-LGCSFIESVQRLAAIA 96
           C FHD+  PS     SK     +YC S  C +  + +  +  +    S +E+   L    
Sbjct: 278 CLFHDDHNPSASIFTSKTGHSIFYCHSSNCGISENFIGVVMLILEKDSRVETFNWLLE-- 335

Query: 97  GVPLPVVDPKIEKKEKIQTDLIRLIE 122
            + L     +  K+E     L   +E
Sbjct: 336 NLDLYPTHFRKLKEESK--VLFDTLE 359


>gi|220920651|ref|YP_002495952.1| putative DNA primase [Methylobacterium nodulans ORS 2060]
 gi|219945257|gb|ACL55649.1| putative DNA primase [Methylobacterium nodulans ORS 2060]
          Length = 401

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 34 AVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF---SCHVKGDHLSFLSALLGCSFIESVQ 90
              ++   CP    +   F  N SK  + C       + GD ++ +  + GC F+ +  
Sbjct: 31 RSTTEWTGPCPGCGGRD-RFGINVSKKLWSCRQGGGSPIGGDIIALVQHVEGCDFLAACA 89

Query: 91 RL 92
           L
Sbjct: 90 IL 91


>gi|114633007|ref|XP_001153575.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A
           isoform 1 [Pan troglodytes]
          Length = 1382

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|90413120|ref|ZP_01221117.1| condesin subunit B [Photobacterium profundum 3TCK]
 gi|90325963|gb|EAS42409.1| condesin subunit B [Photobacterium profundum 3TCK]
          Length = 1486

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 55/419 (13%), Positives = 125/419 (29%), Gaps = 36/419 (8%)

Query: 254  ALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKL 313
            A        R     ++    +L E Y D+          +      A+    L+ +   
Sbjct: 664  AQPGGSDDARLSGLADTLGGSLLSEIYDDITLADAPYFSAMYGPARHAIVVPDLKDIKDK 723

Query: 314  SPRIVLCFD------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
               +  C D      GD      +   +D +   +        +  SR      F R   
Sbjct: 724  LIALEDCPDDLYIIEGDVDSFDDSGFDVDELDGAICVHLNDRQLRYSRYPKVPLFGRAAR 783

Query: 368  KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
            +   E+L  E   L++   K   +++      +     +     I    D        + 
Sbjct: 784  EQRLEQLREERDQLIEDHAKSAFDSQKLQRLYQSFNSFVATHMSIAFNADP---EAELKL 840

Query: 428  IRDRLQQLFQKYI--TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             R++  Q  ++           R     AR           + + L    L+ +    E 
Sbjct: 841  AREKRNQATRQLADAAAKEQQQRSQLVAAREGLALLGKLNPLVNLLEDETLTARFEDVEQ 900

Query: 486  ALLLT------LINHPAILQEQYQELADIRYDNNELQKLWSFLFSD-----FVEQKYFLP 534
             LL        L  H   + E    ++ +  D  +   L +           ++++ F  
Sbjct: 901  QLLQLDEARNYLDRHGKAITELEGLVSALDADPEQFDALQTSYVDADSRLQALKKQIFAV 960

Query: 535  EEIHQR------LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG-------YQQA 581
             ++ +R      +          +L+ Q++   + +        D  +        Y Q 
Sbjct: 961  ADLVERRHHFTYIDSVELVNKSSELNEQLKAKLIAAERERTRCRDALKQARAQANQYNQL 1020

Query: 582  LALYKRFRLLSRQ-KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +A  K      R+   E E+++ ++  + + E          E++ ++H   ++ + +E
Sbjct: 1021 MASLKSSHQAKRETVLEFERELQELGVRADIESEERARIRRDELNERLHSSRNRRSELE 1079


>gi|41322919|ref|NP_958784.1| plectin isoform 1b [Homo sapiens]
 gi|40849940|gb|AAR95682.1| plectin 8 [Homo sapiens]
          Length = 4547

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 55/193 (28%), Gaps = 23/193 (11%)

Query: 457  RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
            R ++     + +      +  ++ +  E  L    +          +        + ELQ
Sbjct: 2158 RQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ-------LEETDHQKNLLDEELQ 2210

Query: 517  KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT--------- 567
            +L +       ++     E    R+      +L  +++ + R   L              
Sbjct: 2211 RLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEA 2270

Query: 568  ----EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
                +      R       A   R      L++Q+   EK + +     +        + 
Sbjct: 2271 EKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAE 2330

Query: 621  LHEVHIQIHQIES 633
            L +   ++ Q ++
Sbjct: 2331 LLQQQKELAQEQA 2343



 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1678 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1737

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1738 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1775



 Score = 37.9 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 19/212 (8%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
               LQQ  Q+ +          ++  R   ++    R    + ++ K  +     E + L
Sbjct: 1390 AKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQA-EAAERSRL 1448

Query: 489  LTLINHPAILQEQYQELADIRY----DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                     ++    +L            ELQ L +       +++    E   +RL  +
Sbjct: 1449 RI----EEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEA--ERLRRQ 1502

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E  ++   +V  A    A  EA     R          +    L  Q EE E+++ Q
Sbjct: 1503 VQDESQRKRQAEVELASRVKAEAEAAREKQRA--------LQALEELRLQAEEAERRLRQ 1554

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +   +    L +       ++    +  A
Sbjct: 1555 AEVERARQVQVALETAQRSAEAELQSKRASFA 1586



 Score = 37.6 bits (85), Expect = 6.4,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 78/268 (29%), Gaps = 23/268 (8%)

Query: 392  NRSFNTPDERAELEIHLKNCINHIK------DQKLRYYYSQAIR-----DRLQQLFQKYI 440
                 + D         +     I+       Q +R    Q        +R  +  ++  
Sbjct: 1210 RYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALLEEIERHGEKVEECQ 1269

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                 Y    K               + S   K K+           +    ++  +   
Sbjct: 1270 RFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTHYSELTTL 1329

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              Q +   ++ +  L+++         +Q+    E + +          L +   Q +  
Sbjct: 1330 TSQYI---KFISETLRRMEEE-ERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQ 1385

Query: 561  GLWSATT--EANIVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEAEKT 614
                A    +    +V +  + A+   ++ R +  + +++    E +I     + EA + 
Sbjct: 1386 AEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQAEAAER 1445

Query: 615  AILI--SILHEVHIQIHQIESQEAMIEG 640
            + L     +  V +Q+   E Q    EG
Sbjct: 1446 SRLRIEEEIRVVRLQLEATERQRGGAEG 1473


>gi|268578867|ref|XP_002644416.1| C. briggsae CBR-TAG-278 protein [Caenorhabditis briggsae]
          Length = 1135

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 86/275 (31%), Gaps = 16/275 (5%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                    +E+     +       +R  E       +  +++    +  +   KD + R
Sbjct: 132 QTLEETVAEYERQKNNVMGTFSEYRERVAERERKLEAEYSSKIIALSEEVLGAKKDFEAR 191

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               QA++D+ ++  ++ + +     +   +    R        L Q  +++ +  ++  
Sbjct: 192 MKSFQALQDKFEREKEQALEKLRKEHQKEIQVLEQRFSDTQLLNLEQKYILEIQRLEEER 251

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                         ++  E+ +            Q L+    +          E +    
Sbjct: 252 K-------------SLRSEKERLGETFEMKLRRAQSLYETELTAAKMLYTKELEALRDH- 297

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            E    ELL + D            ++ +  D+     +  AL K+ +   ++ + + K+
Sbjct: 298 EEALKEELLARQDEFHDRLQELQLQSKRSREDLNSCKNEVTALEKKLQNKEKEVQALTKE 357

Query: 602 IAQVTAKGEAE--KTAILISILHEVHIQIHQIESQ 634
           + QV  +      +   + S   E   +  Q E +
Sbjct: 358 LDQVKTETNDNIRRLTAVTSEFTECKHKFQQQEEE 392


>gi|322500753|emb|CBZ35830.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1665

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 38/358 (10%), Positives = 109/358 (30%), Gaps = 20/358 (5%)

Query: 283 VLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342
           V +L  A     V +      +     L + +  +V      D   R       +     
Sbjct: 367 VQTLHYAAKARRVLNKPRVKEDPSAMELRRANEELVALRRQLDEAQRNGNHYESIEAELR 426

Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
               R+               R   + A     +E          +  E  +     ++ 
Sbjct: 427 EANMRLRREQKEARLRKQVMERREAELAARMRELEDQREAYEAQMQALEAEAERARAQQE 486

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
           + E  L+   + +  +  R    + + ++         +      +  +           
Sbjct: 487 KREEELRR-AHEMATEYARDR-LKEMEEQCVSAEAALRSREEELVKKQRAIEEKMRAAEA 544

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ---YQELADIRYDNNELQKLW 519
           S R     L + +   + +L+E   L ++ +   +  +     + L  +   N ++++ W
Sbjct: 545 SSRCRIDELQRQQKDMENALKEKERLTSM-HEREMRHKYKQAEENLRAMEKRNFQMEEEW 603

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
           +              E++ QR+ E    +   +            A       ++++ + 
Sbjct: 604 AAKVRALEATAKQREEDVAQRIREAQGAQCKAE------------AAVRRKEEELQRRWI 651

Query: 580 QALALYKRFR-LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           Q     +R +  ++ ++ E+++++ +     E  +   L   L +   ++ + E + A
Sbjct: 652 QVDNEARRLQSEVAAKEAELKRRVQEANRSTEQ-REEELNERLRKAEYELSRRERETA 708


>gi|313235800|emb|CBY19784.1| unnamed protein product [Oikopleura dioica]
          Length = 2671

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 81/278 (29%), Gaps = 22/278 (7%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +S      +  RE +  +F+  D   +        +             + +++ L+++ 
Sbjct: 1076 QSKMATREIMSRECQTMNFDLADGMKDSVQEKLAKLETTASGTELK--CRELQNLLEKIQ 1133

Query: 437  QKYIT--EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
            +      E       W ++   R  +     L    L++        + E  LL    + 
Sbjct: 1134 RASTKYAEVRDELLPWIEDMEVRLDQFDEVSLPDEILIEELSQMSEKIAERRLLA---DR 1190

Query: 495  PAILQEQYQELADIRYDNNELQ------KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                 ++   L  ++  N   Q       +         E +    E             
Sbjct: 1191 LVTTADKLAPLGALQVKNEAAQISSRYSDIRERCRQRKRETQQLAIEHQQYSDRLNNLNN 1250

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK----QIAQ 604
             L ++D ++ ++       E N+   R        L K    L   K  ++K    Q++ 
Sbjct: 1251 ALHRIDERLSNSD----RPECNVEKCRAAMADLNQLSKELAKLEAAKTTLQKAGENQLSD 1306

Query: 605  VTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEGF 641
               + E  K       L   +  +  ++   EA  E F
Sbjct: 1307 PKIRSELNKIDATWDHLQNTLKSKQERLRQAEAASERF 1344


>gi|300858238|ref|YP_003783221.1| hypothetical protein cpfrc_00820 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685692|gb|ADK28614.1| hypothetical protein cpfrc_00820 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205960|gb|ADL10302.1| ATP-binding protein [Corynebacterium pseudotuberculosis C231]
 gi|302330513|gb|ADL20707.1| ATP-binding protein [Corynebacterium pseudotuberculosis 1002]
 gi|308276195|gb|ADO26094.1| ATP-binding protein [Corynebacterium pseudotuberculosis I19]
          Length = 857

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 70/218 (32%), Gaps = 25/218 (11%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           + YYS     +  +L +         G   +   R  + +G   R+   +  K    ++ 
Sbjct: 180 KRYYSGQKIKKNGELDRALNDLEKAQGDLDEVTNRSIELEGKVSRISAVTQRKAAAEEEL 239

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              +A  +          +   + +  I    +E  +L   + +              +R
Sbjct: 240 PHAKAECVKA----QEKWKAAQEHIQQIALAQSEADRLHEQVEN-------------IER 282

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           LC +   +  +Q+  +     L  A  E       +  +    L K  + + +Q +E  +
Sbjct: 283 LCIQRKEKTERQISEEAELDALKQALAEEETRSASEE-EHISELNKEKQDVQQQLKEARE 341

Query: 601 QIAQVTAKGE-------AEKTAILISILHEVHIQIHQI 631
            ++ +             E+   + + L E+  ++  I
Sbjct: 342 LLSSLRKGSALAKAFQCQEELNEITAELAELDKELDAI 379


>gi|296211119|ref|XP_002752272.1| PREDICTED: EF-hand calcium-binding domain-containing protein
           4B-like [Callithrix jacchus]
          Length = 731

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 56/149 (37%), Gaps = 15/149 (10%)

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE----EIHQRLCERG------FGELLK 551
            ++L D+  ++ E Q  +  L      QK    E    ++  +L +        F + L 
Sbjct: 146 EEDLGDMD-EDKEAQ--FQMLMDRLGAQKVLEDESDVKQLWLQLKKDEPHLLPSFEDFLT 202

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           ++  Q+++A       E  +      Y + +     +  + +Q +  ++Q      +   
Sbjct: 203 RIFSQLQEAHEEKNELECALKRKIAAYDEEIQHL--YEEMEQQIKNEKEQFLLKDTERFQ 260

Query: 612 EKTAILISILHEVHIQIHQIESQEAMIEG 640
            ++  L   L     ++ Q+  ++  +EG
Sbjct: 261 ARSQELEQKLLRKEQELEQLTQKQKRLEG 289


>gi|261329447|emb|CBH12428.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972]
          Length = 4210

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 29/287 (10%), Positives = 84/287 (29%), Gaps = 11/287 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +      G  A E  +             E    +    +   +    L      + + +
Sbjct: 1147 EELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEME 1206

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGK--- 475
             +    +A  + L+        E         +   +  + +  ++ L  +   K +   
Sbjct: 1207 EQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELD 1266

Query: 476  -LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-- 532
              ++K    E  L      +  +      +  ++   N +L ++   L     E +    
Sbjct: 1267 VQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRN 1326

Query: 533  -LPEEIHQ-RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               ++  +  +      E+ +QL     +      T      ++    ++   + ++   
Sbjct: 1327 TDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAE 1386

Query: 591  LSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQE 635
            L  + EE+         + +   EK   +   L E+  +  ++ + E
Sbjct: 1387 LRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTE 1433



 Score = 38.3 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 76/254 (29%), Gaps = 38/254 (14%)

Query: 416  KDQKLRYYYSQAI------RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             D+ LR +    I      R + Q+  +    E     +  +     + Q  P +   Q 
Sbjct: 769  PDESLRDHDKDNICNIRAHRQKQQETEEPLNKESLEESKAVRIKEDKQGQHNPIRPHQQI 828

Query: 470  SLVKGKLSKKPSLREA----------------ALLLTLINHPAILQEQYQELADIRYDNN 513
                 +  +   +REA                 L      +  +      +  ++   N 
Sbjct: 829  IGQLIEKEELHCIREAASGDVELQGYVHEMEEQLAELRAENEELRNTDGDKARELDVQNE 888

Query: 514  ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            +L ++   L     E      EE+H+          L+    ++ +           +  
Sbjct: 889  KLHEMEEQLAELRAEN-----EELHRVRETASGDVELQGYVHEMEEQLAELRAENEELHR 943

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQV-----TAKGEAE------KTAILISILH 622
            VR+     + L      +  Q  E+  +  ++     TA G+ E      +    ++ L 
Sbjct: 944  VREAASGDVELQGYVHEMEEQLAELRAENEELHRVRETASGDVELQGYVHEMEEQLAELR 1003

Query: 623  EVHIQIHQIESQEA 636
              + ++   +  +A
Sbjct: 1004 AENEELRNTDGDKA 1017


>gi|218294800|ref|ZP_03495654.1| Tetratricopeptide TPR_4 [Thermus aquaticus Y51MC23]
 gi|218244708|gb|EED11232.1| Tetratricopeptide TPR_4 [Thermus aquaticus Y51MC23]
          Length = 918

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 77/292 (26%), Gaps = 21/292 (7%)

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G D +       + A+++++  +    +   +             R              
Sbjct: 275 GLDLEEVRALLEEGAYKEVL--ARVPEEAEGEAAYLRGRALYALSRYAEAEEALKRAFSE 332

Query: 416 KDQKLRYYYSQAI------RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
           + + LR      +      + RL+ L  +        GR +    R+ D           
Sbjct: 333 EAEDLRALVLVELGEYERAKRRLEGLAPRGGRYRLALGRVYLAEGRYADALRQFVESGLP 392

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQ-----EQYQELADIRYDNNELQK-LWSFLF 523
                       + E   +          +     E  ++L+        L+  L + L 
Sbjct: 393 EAEVYAREALERIAER--MRRFAREGEWAEVSRRAEFVEDLSPGLLTREMLRLGLKAALL 450

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDR-----QVRDAGLWSATTEANIVDVRQGY 578
                +       +       GF  L     R     + R   L +          R+  
Sbjct: 451 QGLFARAERYARRLADLGEAEGFLGLALAGLRLRSPLEYRGEDLKAVEPYLTEALAREEI 510

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            +AL L    R    +  E  + + + +  GE E   +    L EV   + +
Sbjct: 511 PEALLLLGILRRREGRLHEALRLLERASRHGEGEVAGLAFHHLAEVKRALRR 562


>gi|190689487|gb|ACE86518.1| dynactin 1 (p150, glued homolog, Drosophila) protein [synthetic
           construct]
          Length = 1278

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + ++L+ L  K   + +      K   +    +    ++ +      +  K+     
Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283

Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538
              L     +   + +    +     D        + L   +    + V++     E + 
Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             + E+G                       A + D     +   +  K+  +  ++  E 
Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397

Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + Q   + +   +   E+ +   S + E+  Q+      E M+E
Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441



 Score = 37.9 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330


>gi|146085957|ref|XP_001465403.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134069501|emb|CAM67824.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 1685

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 17/137 (12%)

Query: 513 NELQKLWSFLFS-------DFVEQKYFLPEEIHQRLCE---RGFGELLKQLDRQVRDAGL 562
            + + L + L            E          + L +   R      + L+R  R    
Sbjct: 787 QQHRALRAALLEEVQRREQALEENCVAERRAHQEELQDVIMREKEASQRALERLERQHAA 846

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
                EA      +  + ALA+        +Q E  E +  +  A+ +      L + + 
Sbjct: 847 AQRQVEAEAERRVRAGEDALAVR------EKQLEIAEAEWRRRRAEDKEASLQQLTAHVA 900

Query: 623 EVH-IQIHQIESQEAMI 638
             H  Q+ ++E QEA++
Sbjct: 901 AQHAKQLAELEEQEAIL 917


>gi|109730369|gb|AAI11802.1| ROCK2 protein [Homo sapiens]
          Length = 703

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 97/288 (33%), Gaps = 39/288 (13%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD---- 430
           + E     +     E +        E  +        +  ++DQ     Y   +      
Sbjct: 137 MSEKQLKQENNHLMEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 196

Query: 431 ----------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
                     +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 197 ELKEECEEKTKLGKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 256

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 257 EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 308

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
            +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 309 NKLKD--VQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 366

Query: 594 -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 367 NDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 411


>gi|109096977|ref|XP_001107254.1| PREDICTED: calcium-binding and coiled-coil domain-containing
           protein 1 isoform 1 [Macaca mulatta]
          Length = 605

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 81/282 (28%), Gaps = 27/282 (9%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             R       E+    S    ++  +R+  +R              +    + I+    +
Sbjct: 157 TARQEHAELMEQYKGISRSHGEITEERDILSRQQGDH------VARILELEDDIQTISEK 210

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               +   DRL+   +    E        K+    ++Q       ++  L   +     S
Sbjct: 211 VLTKEVELDRLRDTVKALTREQEKLLGQLKEVQADKEQSEAELEPLKEQLRGAQELAASS 270

Query: 482 LREAALL------LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            ++A LL              I +     L      N  L +L   L  +   Q      
Sbjct: 271 QQKATLLGEELASAATARDRTIAELHRSRLEVAE-VNGRLAELGLHLKEE-KCQWSKERA 328

Query: 536 EIHQRLCERG-----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
            + Q +             + +L++ V++    +   +  +   +           +   
Sbjct: 329 GLLQSVEAEKDKILKLSAEILRLEKAVQEERTQNQVFKTELAREKDS------SLVQLSE 382

Query: 591 LSRQKEEIEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQ 630
             R+  E+   +   Q   +   E+   L+  + ++  ++ +
Sbjct: 383 SKRELTELRSALRVLQKEKEQLQEEKQELLEYMRKLEARLEK 424


>gi|55376931|ref|YP_134782.1| hypothetical protein pNG7386 [Haloarcula marismortui ATCC 43049]
 gi|55229656|gb|AAV45076.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 671

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 47/138 (34%), Gaps = 3/138 (2%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           L E   +   I       Q+L + +     E +         R         +++L+ +V
Sbjct: 389 LDELTGQRDKIAETRTRAQELTATIEDVDAEIERRQTTVTDLRERRNNLSARVEELEERV 448

Query: 558 RDAGLWSATTEANI-VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                       ++     +   +   L      +S +  +IE +I +      A +   
Sbjct: 449 TTLRTEEFDEVLDLHTKANELELELDRLESERDEVSEEIADIESEIRRNNEL--AAQREE 506

Query: 617 LISILHEVHIQIHQIESQ 634
           ++  L ++  +I ++E++
Sbjct: 507 VVDELIDLRSRIDRLEAE 524


>gi|15902165|ref|NP_357715.1| surface protein pspA precursor [Streptococcus pneumoniae R6]
 gi|116515876|ref|YP_815641.1| pneumococcal surface protein A [Streptococcus pneumoniae D39]
 gi|153841|gb|AAA27018.1| pneumococcal surface protein A [Streptococcus pneumoniae]
 gi|15457660|gb|AAK98925.1| Surface protein pspA precursor [Streptococcus pneumoniae R6]
 gi|116076452|gb|ABJ54172.1| pneumococcal surface protein A [Streptococcus pneumoniae D39]
          Length = 619

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 11/141 (7%)

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
           +  +  +     +          +   + + E    E   +       A +     +   
Sbjct: 99  DKAVAAVQQAYLAYQQATDKAAKDAADKMIDEAKKREEEAKTKFNTVRAMVVPEPEQLAE 158

Query: 572 --VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK------TAILISILHE 623
                 +  Q+A  L K+      + EE EK+  +   K +AE+       A L + +H 
Sbjct: 159 TKKKSEEAKQKAPELTKKLEEAKAKLEEAEKKATEAKQKVDAEEVAPQAKIAELENQVHR 218

Query: 624 VHIQIHQIESQEA---MIEGF 641
           +  ++ +I+  E+     EGF
Sbjct: 219 LEQELKEIDESESEDYAKEGF 239


>gi|116201505|ref|XP_001226564.1| hypothetical protein CHGG_08637 [Chaetomium globosum CBS 148.51]
 gi|88177155|gb|EAQ84623.1| hypothetical protein CHGG_08637 [Chaetomium globosum CBS 148.51]
          Length = 957

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/152 (7%), Positives = 47/152 (30%), Gaps = 15/152 (9%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFGELL 550
           +    ++++     + +   + + ++       + ++ +      + + L       +  
Sbjct: 60  LRVKELVEQIEDVRSQLDSAHEKSRR-----QDNLMQSQAREITNLKEELSAFNAVSQDS 114

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA------- 603
            ++  +        A  +  +  +R        +      L RQ   +E ++A       
Sbjct: 115 AKVLSEKLALSREVAVLKPELEHLRSQLAHQKDVLAEKLALERQLNTLEVELANEKRAAE 174

Query: 604 --QVTAKGEAEKTAILISILHEVHIQIHQIES 633
                  G+ E    L   + E+  ++ + + 
Sbjct: 175 KAAQKQDGDNEVEEELRKQVRELEKELAKGKR 206


>gi|94311470|ref|YP_584680.1| ATP-dependent transcription regulator LuxR [Cupriavidus
           metallidurans CH34]
 gi|93355322|gb|ABF09411.1| putative ATP-dependent transcriptional regulator, LuxR-family
           [Cupriavidus metallidurans CH34]
          Length = 925

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 26/89 (29%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            +L+ + ++L  +   +  L+ L     S  V  +         RL +      L +L  
Sbjct: 614 ELLENRIEQLEAVSVPDAVLRALLMLALSHRVAGRRLEAAAYLDRLEDYAVRHHLDRLLA 673

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALAL 584
                       E  I        +A  L
Sbjct: 674 LALAVRSRWQLQEGEIDLAEATVARAQKL 702


>gi|85105974|ref|XP_962075.1| hypothetical protein NCU05304 [Neurospora crassa OR74A]
 gi|28923669|gb|EAA32839.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 485

 Score = 40.6 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 65/199 (32%), Gaps = 8/199 (4%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
                 +      +K  +   +K    +         K   +PS  +      +     I
Sbjct: 20  PDQDAFNENLAKAEKEYQEALKKYNEIKAKVELAAPSKNKDQPSPTQKKRQELISQLNEI 79

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
            Q+Q           +++++L   L S   EQK    +              +++L+++V
Sbjct: 80  RQQQAGGKNARTSKLDQIKRLDEQLRSRIAEQKTARSK--VNFKSTEELDREIERLEKEV 137

Query: 558 RDAGLWSATTEANIVDV------RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
               +     +  + ++      R+ +       K+   L  + +EI+  +    AK  +
Sbjct: 138 NGGMMKLVDEKKALAEISNLRKQRKSFAGFDDAQKQIDDLKAKIKEIKDSLEDPEAKALS 197

Query: 612 EKTAILISILHEVHIQIHQ 630
           EK   L + L  +  +  +
Sbjct: 198 EKYNKLQAELDAIKAEQDE 216


>gi|301759199|ref|XP_002915445.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           A-like [Ailuropoda melanoleuca]
          Length = 1352

 Score = 40.6 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|297303549|ref|XP_001096514.2| PREDICTED: dystrophin, partial [Macaca mulatta]
          Length = 2526

 Score = 40.6 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L +  +K   +     +  K        K  S R   ++L+  +      L E  +   
Sbjct: 1415 LLDESEKKKSQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 1474

Query: 491  -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                  I+H     +    L ++   N+++QKL   L ++  +      E+ ++ + E  
Sbjct: 1475 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 1534

Query: 546  ---FGELLKQLDRQVRDAGLWSATTEANIVD--------------------VRQGYQQAL 582
                 ELL++ D   +         E  I                        +   Q  
Sbjct: 1535 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWY 1594

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
               ++   L +  ++IEK++A +    +  K   +   L +   +++ +  Q
Sbjct: 1595 QYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQ 1646


>gi|291404897|ref|XP_002718731.1| PREDICTED: eukaryotic translation initiation factor 3, subunit 10
           theta, 150/170kDa [Oryctolagus cuniculus]
          Length = 1362

 Score = 40.6 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|289547992|ref|YP_003472980.1| metal dependent phosphohydrolase [Thermocrinis albus DSM 14484]
 gi|289181609|gb|ADC88853.1| metal dependent phosphohydrolase [Thermocrinis albus DSM 14484]
          Length = 536

 Score = 40.6 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 10/120 (8%)

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             +     E+   + EE  ++L ER        + ++ +      +  E    ++ +  +
Sbjct: 65  ERIIRLAKEEAQSIKEEAERKLKERE-----SWVAQKEQTLDRRLSALEKREEELYRREK 119

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +   L K+  L  R   EIE++I  +  K +  +T      L E+  +I  +  +EA IE
Sbjct: 120 EIRELEKQLDLAQR---EIERRIKDLEEKEKEIETLR-QRELLELQ-RIASLTMEEARIE 174



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 72/191 (37%), Gaps = 18/191 (9%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
            R +    Q +++ +  + +  K+ + REA  +           E+ + +  IR    E 
Sbjct: 24  KRKRDIDVQAILEKAKEEARQIKEEAQREAQRIT------QTASEEVERI--IRLAKEEA 75

Query: 516 QKLWSFLFSDFVEQKYFLPEE---IHQRL-----CERGFGELLKQLDRQVRDAGLWSATT 567
           Q +         E++ ++ ++   + +RL      E       K++    +   L     
Sbjct: 76  QSIKEEAERKLKERESWVAQKEQTLDRRLSALEKREEELYRREKEIRELEKQLDLAQREI 135

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT--AKGEAEKTAILISILHEVH 625
           E  I D+ +  ++   L +R  L  ++   +  + A++    K E E     I ++  + 
Sbjct: 136 ERRIKDLEEKEKEIETLRQRELLELQRIASLTMEEARIEVLRKAEEEARVEAIRVMKRIE 195

Query: 626 IQIHQIESQEA 636
            +  Q+   EA
Sbjct: 196 EEARQMAQMEA 206


>gi|281338077|gb|EFB13661.1| hypothetical protein PANDA_003432 [Ailuropoda melanoleuca]
          Length = 1337

 Score = 40.6 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 502 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 559

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 560 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 601


>gi|259485991|tpe|CBF83478.1| TPA: Calmodulin-binding coil-coil protein Fragment
           [Source:UniProtKB/TrEMBL;Acc:Q96X03] [Aspergillus
           nidulans FGSC A4]
          Length = 1207

 Score = 40.6 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 96/295 (32%), Gaps = 25/295 (8%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN-TPDERAELEIHLKNCINHIKDQKLR 421
            +   + A   L        D   K   ++       +   +    L+  +   +D   R
Sbjct: 255 YKKSLQQAERDLEAYRQQFQDFKEKMRRKHTDETIQREMEDQRVKELQEQLREARDS--R 312

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLSKKP 480
                 +RD ++ L      +        ++    +D+    +  +     +  +  ++ 
Sbjct: 313 SEEIDKLRDDIEDLEASLREKDRTIEEREEEIEELKDRDSQEKDSLSELETELRRAKEQL 372

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP--EEIH 538
              + +L     +       + Q L +       LQ+L   + +  +  K      EE  
Sbjct: 373 EELQDSLDQAKSDAIEARTSERQALEEKERAEQNLQELHDEMSNKSISTKGLTRQLEEEV 432

Query: 539 QRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + L +R     E L+   +Q+ D       +       R+   + L   +R R ++RQ+ 
Sbjct: 433 KELRQRNSTLKEELESKTQQMNDLEERLQNSRETTDSERERLLEELTQVRREREVARQER 492

Query: 597 E-----IEKQIAQVTAKGEA------------EKTAILISILHEVHIQIHQIESQ 634
           +     +++   ++  K +             ++++ L + L +    I +++  
Sbjct: 493 DDLNVQLQEAHDELQRKTDEKALLHTRHHALTDESSNLQNELAKAQSNIRELQES 547



 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 103/328 (31%), Gaps = 22/328 (6%)

Query: 327 GLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLW 386
                    + +L  L    R   V     +D +  ++        K   ++L       
Sbjct: 463 SRETTDSERERLLEELTQVRREREVARQERDDLNVQLQEAHDELQRKTDEKALLHTRHHA 522

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKD------QKLRYYYSQAIRDRLQQLFQKYI 440
             +  +   N   +       L+  ++ +K       + LR  Y + I    +++   + 
Sbjct: 523 LTDESSNLQNELAKAQSNIRELQESLDTVKQNAAENAENLRSQYMEDIERLQEEIESLHH 582

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                 G++  +  R    +   Q     +  +    K+   +   +  TL    + LQE
Sbjct: 583 EIEDKEGQFALEQDRWESLRRNLQVQKDRAEDQAAGFKRTIEKLEQVEHTLTGKESKLQE 642

Query: 501 QYQELADIRYD------------NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                    ++            N++L      +     E      E    R  E    E
Sbjct: 643 VIDSEKARHFNAEAVLSRQVKELNDDLSAKRDAIDELRHELLSVKEELRLARRAEATLKE 702

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            ++ L+ +V    L S+  E          +  +    + + L   K+++  Q+A    +
Sbjct: 703 KVQSLEDEVVV--LQSSLEEEQEYTKAHTRKGPVEQESQVQKLLADKQKLRDQLANAHVE 760

Query: 609 GEAEKT--AILISILHEVHIQIHQIESQ 634
               KT  A + +   E+  Q+ Q+++Q
Sbjct: 761 LHDLKTVKAEIEAERDELQAQLEQVQNQ 788


>gi|126256672|gb|ABO09862.1| paramyosin [Trichinella spiralis]
 gi|316968063|gb|EFV52403.1| paramyosin [Trichinella spiralis]
          Length = 885

 Score = 40.6 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 88/275 (32%), Gaps = 27/275 (9%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D   +            E+          +      +   +R  L+    + +  + D K
Sbjct: 173 DQMQKDKHAAEKAAEKHEAHARELQNRVDDLAKNLNDLASQRQRLQQENNDLMKELHDVK 232

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           ++    Q ++ +L Q  ++         R   +      Q       +Q +L +   ++ 
Sbjct: 233 VQMENIQHVKTQLAQQLEEARRRLEDAERERSQMQTQLHQMQLELDSIQGALEEESSARA 292

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +          + +  I Q + +  A++     E+  L   +     E           
Sbjct: 293 EAEH-----KLSLANTEISQWKSKFDAEVSLHQEEVDDLRKKMIQKQAEY---------- 337

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              E     +L+++ +  +      +  E  IVD+ +              L RQKE++E
Sbjct: 338 ---EEQIEIMLQKISQLEKAKSRLQSEVEVLIVDLEKAQSTIAI-------LERQKEQLE 387

Query: 600 KQIAQVTAKGEA--EKTAILISILHEVHIQIHQIE 632
           + +A++  + +   ++       L     ++ +++
Sbjct: 388 RMVAEMKTRLDEVTQELEATQRELRATQAELQKMK 422


>gi|119592173|gb|EAW71767.1| huntingtin interacting protein 1, isoform CRA_a [Homo sapiens]
          Length = 616

 Score = 40.6 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/214 (8%), Positives = 74/214 (34%), Gaps = 3/214 (1%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             ++   +F    +             +        +   + S +K +L    +  +  +
Sbjct: 316 FDNKFDDIFGSSFSSDPFNFNSQNGVNKDEKDHLIERLYREISGLKAQLENMKTESQRVV 375

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-HQRLCERGF 546
           L    +   +  +  ++    +   ++ + L + L     +++     +     +  +  
Sbjct: 376 LQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQ 435

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
               +    + + + L     +    +     +Q     +    L R+K+E+E  + +++
Sbjct: 436 ANEQRYSKLKEKYSELVQNHADLLRKNAEVT-KQVSMARQAQVDLEREKKELEDSLERIS 494

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +G+  KT   + +L  +  ++   + +  +++G
Sbjct: 495 DQGQR-KTQEQLEVLESLKQELATSQRELQVLQG 527


>gi|94266583|ref|ZP_01290266.1| DnaB helicase [delta proteobacterium MLMS-1]
 gi|93452778|gb|EAT03313.1| DnaB helicase [delta proteobacterium MLMS-1]
          Length = 490

 Score = 40.6 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 53/149 (35%), Gaps = 8/149 (5%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L  +    E  +L +++  P  +    + ++   +     + +++ + + F + +    
Sbjct: 47  RLPPQNIEAEQCVLGSILLQPGAMGSAVEIVSPDDFYREPHRLIFTAMLALFDKSEPLDL 106

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I+  L +       ++LD     A L S T    +      Y + +      R L + 
Sbjct: 107 ITINSHLQDS------RKLDTVGGPAYLASLTDLVPVATNIGHYARLVRDKAILRRLIQT 160

Query: 595 KEEIEKQIAQVTAKGEA--EKTAILISIL 621
             EI  +  +     +A  ++    +  +
Sbjct: 161 STEIAGRCYEEQDDIDALLDEVEQTVFEI 189


>gi|47607492|ref|NP_000436.2| plectin isoform 1c [Homo sapiens]
 gi|40849930|gb|AAR95677.1| plectin 1 [Homo sapiens]
          Length = 4574

 Score = 40.6 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 55/193 (28%), Gaps = 23/193 (11%)

Query: 457  RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
            R ++     + +      +  ++ +  E  L    +          +        + ELQ
Sbjct: 2185 RQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ-------LEETDHQKNLLDEELQ 2237

Query: 517  KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT--------- 567
            +L +       ++     E    R+      +L  +++ + R   L              
Sbjct: 2238 RLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEA 2297

Query: 568  ----EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
                +      R       A   R      L++Q+   EK + +     +        + 
Sbjct: 2298 EKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAE 2357

Query: 621  LHEVHIQIHQIES 633
            L +   ++ Q ++
Sbjct: 2358 LLQQQKELAQEQA 2370



 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1705 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1764

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1765 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1802



 Score = 37.9 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 19/212 (8%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
               LQQ  Q+ +          ++  R   ++    R    + ++ K  +     E + L
Sbjct: 1417 AKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQA-EAAERSRL 1475

Query: 489  LTLINHPAILQEQYQELADIRY----DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                     ++    +L            ELQ L +       +++    E   +RL  +
Sbjct: 1476 RI----EEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEA--ERLRRQ 1529

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E  ++   +V  A    A  EA     R          +    L  Q EE E+++ Q
Sbjct: 1530 VQDESQRKRQAEVELASRVKAEAEAAREKQRA--------LQALEELRLQAEEAERRLRQ 1581

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +   +    L +       ++    +  A
Sbjct: 1582 AEVERARQVQVALETAQRSAEAELQSKRASFA 1613



 Score = 37.6 bits (85), Expect = 6.5,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 78/268 (29%), Gaps = 23/268 (8%)

Query: 392  NRSFNTPDERAELEIHLKNCINHIK------DQKLRYYYSQAIR-----DRLQQLFQKYI 440
                 + D         +     I+       Q +R    Q        +R  +  ++  
Sbjct: 1237 RYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALLEEIERHGEKVEECQ 1296

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                 Y    K               + S   K K+           +    ++  +   
Sbjct: 1297 RFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTHYSELTTL 1356

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              Q +   ++ +  L+++         +Q+    E + +          L +   Q +  
Sbjct: 1357 TSQYI---KFISETLRRMEEE-ERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQ 1412

Query: 561  GLWSATT--EANIVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEAEKT 614
                A    +    +V +  + A+   ++ R +  + +++    E +I     + EA + 
Sbjct: 1413 AEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQAEAAER 1472

Query: 615  AILI--SILHEVHIQIHQIESQEAMIEG 640
            + L     +  V +Q+   E Q    EG
Sbjct: 1473 SRLRIEEEIRVVRLQLEATERQRGGAEG 1500


>gi|15900059|ref|NP_344663.1| pneumococcal surface protein A [Streptococcus pneumoniae TIGR4]
 gi|14971584|gb|AAK74303.1| pneumococcal surface protein A [Streptococcus pneumoniae TIGR4]
          Length = 744

 Score = 40.6 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 46/127 (36%), Gaps = 1/127 (0%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           +   L   L    VE K    E++   +          Q         L  A  +     
Sbjct: 187 DYATLKVALAKKEVEAKELEIEKLQYEISTLEQEVATAQHQVDNLKKLLAGADPDDGTEV 246

Query: 574 VRQGYQQ-ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +    ++    L  +   L++++ E+EK +  +  +G+ +      +   E+  +  +++
Sbjct: 247 IEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQ 306

Query: 633 SQEAMIE 639
           ++ A +E
Sbjct: 307 NKVADLE 313



 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L ++       +  L++++ +  +      A+ 
Sbjct: 352 ELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLEKEISNLEI--LLGGADS 409

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            D     Q  LA   +   L + ++E++  + ++   G+ E+T
Sbjct: 410 EDDTAALQNKLA--TKKAELEKTQKELDAALNELGPDGDEEET 450


>gi|332258770|ref|XP_003278468.1| PREDICTED: uncharacterized protein KIAA0562-like [Nomascus
           leucogenys]
          Length = 939

 Score = 40.6 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 34/132 (25%), Gaps = 5/132 (3%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
               + +         L   ++      P        +      L  L   +      + 
Sbjct: 167 DPADFSDESNTASREKLIDHYLGHNSEDPALEGTYARKSDSISPLDDLAFDMYQDPEVAQ 226

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILISILH 622
                    R+  Q+    Y +   L +   +++K   ++ +   +           +  
Sbjct: 227 IIRKLDERKREAVQKERYDYAKK--LKQAIADLQKVGERLGRYEVEKRCAVEKEDYDLAK 284

Query: 623 EVHIQIHQIESQ 634
           E   Q+ Q  ++
Sbjct: 285 EKKQQMEQYRAE 296


>gi|316976081|gb|EFV59424.1| putative protein kinase domain protein [Trichinella spiralis]
          Length = 1727

 Score = 40.6 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 45/342 (13%), Positives = 103/342 (30%), Gaps = 20/342 (5%)

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPG--LRAAYKAIDLVLCHLIPGNRVNFVLLS 354
           +  + +     RLLWK   R V   D D      +       L     +   +   +   
Sbjct: 399 TCVSLMVFVVDRLLWKRWQRKVYANDSDYVRLFSKYERLVEKLEQADDLQEEKSRILAEL 458

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
           + +D              + +  +   V   +  E              +E  +      
Sbjct: 459 KCKDAALKGVEAELVRASRELENARGGVGSEFLEE---------GRLEAMEAAIAEKDRQ 509

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-RDQKGPSQRLMQSSLVK 473
           ++D   R+   +   D+L +  +    + +   R    N    + +       +QS  V+
Sbjct: 510 LQDADRRFVELREEADKLDRGHEAERQQLNEQIRQLYANLEWEKSRNEKLVEELQSREVE 569

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADI----RYDNNELQKLWSFLFSDFVEQ 529
              + +   RE  LL  L      +    + +  +    R  N++L+ +  +   +  E 
Sbjct: 570 LASTVELKQREGQLLAELEASKVEIHGLKEVVQRLWQCRRRSNDQLKGVADWNVEEDEEA 629

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                E   Q   +   G  L +L  Q+  +        A +   ++      A  ++ R
Sbjct: 630 TGV-CEGSEQPTDDVDVGLDLAKLYAQLGRSNGELEKMRAEVEKEQRCRLAVEAELEQLR 688

Query: 590 LLSRQKEEIEKQ--IAQVTAKGEAEKTAILI-SILHEVHIQI 628
                 +  ++Q  +  + A    +       +   E+  Q+
Sbjct: 689 CERDSMKNAQQQAEMQTMEAVTRLKVLEEFFEARQKEMQKQL 730


>gi|309359211|emb|CAP32855.2| CBR-TAG-278 protein [Caenorhabditis briggsae AF16]
          Length = 1177

 Score = 40.6 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 86/275 (31%), Gaps = 16/275 (5%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                    +E+     +       +R  E       +  +++    +  +   KD + R
Sbjct: 165 QTLEETVAEYERQKNNVMGTFSEYRERVAERERKLEAEYSSKIIALSEEVLGAKKDFEAR 224

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               QA++D+ ++  ++ + +     +   +    R        L Q  +++ +  ++  
Sbjct: 225 MKSFQALQDKFEREKEQALEKLRKEHQKEIQVLEQRFSDTQLLNLEQKYILEIQRLEEER 284

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                         ++  E+ +            Q L+    +          E +    
Sbjct: 285 K-------------SLRSEKERLGETFEMKLRRAQSLYETELTAAKMLYTKELEALRDH- 330

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            E    ELL + D            ++ +  D+     +  AL K+ +   ++ + + K+
Sbjct: 331 EEALKEELLARQDEFHDRLQELQLQSKRSREDLNSCKNEVTALEKKLQNKEKEVQALTKE 390

Query: 602 IAQVTAKGEAE--KTAILISILHEVHIQIHQIESQ 634
           + QV  +      +   + S   E   +  Q E +
Sbjct: 391 LDQVKTETNDNIRRLTAVTSEFTECKHKFQQQEEE 425


>gi|301604572|ref|XP_002931924.1| PREDICTED: Golgin subfamily A member 3-like [Xenopus (Silurana)
           tropicalis]
          Length = 1504

 Score = 40.6 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 525 DFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
             +E      E  + ++ E       +L ++L+    +        +  +   R+  Q  
Sbjct: 647 QHIEADMLDQEAAYHQIQEAKSMVEEDLQRKLEDFEEEKEQLQKLADTAVALERELEQVK 706

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEA-----EKTAILISILHEVHIQIHQIESQEA 636
           L L++R   L   ++E  + + Q++   EA     +    L     E+  ++ +++S  A
Sbjct: 707 LNLHQRDLQLEELQQEHLEILKQLSLTQEALHTKDQSLKDLQMRYDELEGRLSELQSDTA 766

Query: 637 MIE 639
             +
Sbjct: 767 SKD 769


>gi|297687475|ref|XP_002821238.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           A-like isoform 2 [Pongo abelii]
          Length = 1382

 Score = 40.6 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|296238761|ref|XP_002764296.1| PREDICTED: hypothetical protein LOC100399449, partial [Callithrix
           jacchus]
          Length = 819

 Score = 40.6 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 103/287 (35%), Gaps = 22/287 (7%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
                    +  +L  + + ++R+ + R   + +++ +L   ++     ++D++ R+  +
Sbjct: 205 QDTENANLQLEVNLQAMKIQFERDLQGRDEQSEEKQQQLVRQVREMEAELEDERKRHSMA 264

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ--RLMQSSLVKGKLSKKPSLR 483
            A   +L+   +  I   +       +       +       L  +   + ++  +    
Sbjct: 265 MAAWKKLEIDLEAQIDSANKNRDEAIEQLWKWQAQVKHCMCELDDTRASREEILAQAKEN 324

Query: 484 EAALLLT---LIN-HPAIL----------QEQYQELADIRYDNNELQKLWSF---LFSDF 526
           E  L      +I+ H  +           QE+   L D+     +  +L      + + +
Sbjct: 325 ERNLKRVEAEMIHLHEELAAAERAKRQAQQERDDLLVDLEGKQKKFDQLLEEEKTISAKY 384

Query: 527 VEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            E++     E  ++  +       LK+   Q  +    +      + D+     +++   
Sbjct: 385 AEERDRAEAEAREKETKALSLARALKEAMEQKVELERLNKQFRVEMEDIMSSKSKSVHEL 444

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI--LHEVHIQIHQ 630
           K   LL +Q EE++ Q+ ++  + +  + A L     L  + IQ  +
Sbjct: 445 KSRWLLEQQVEELKTQLEELEDELQDTENANLQLEVNLQAMKIQFER 491



 Score = 37.2 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 106/271 (39%), Gaps = 15/271 (5%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
                    +  +L  + + ++R+ + R   + +++ +L   ++     ++D++ R+  +
Sbjct: 469 QDTENANLQLEVNLQAMKIQFERDLQGRDEQSEEKQQQLVRQVREMEAELEDERKRHSMA 528

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS--QRLMQSSLVKGKLSKKPSLR 483
            A R +L+   + +I   +       +  R    +     + L  +   + ++  +    
Sbjct: 529 VASRKKLEIDLEAHIDLANRNWDEAIEQLRKWRAQVKHCMRELDDTRASREEILAQAKEN 588

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  L        A +   ++ELA       + Q+    L  D   Q+     +I   L +
Sbjct: 589 ERNLKSV----EAEMIRLHEELAAAERAKRQAQQERDDLLVDLDHQR-----QIVCHLEK 639

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           + F +LL +   +   +  ++   +    + R+   +AL+L +  +    QK E+E ++ 
Sbjct: 640 QKFDQLLAE---EKTISAKYAEERDRAEAEAREKETKALSLARALKEAMEQKVELE-RLN 695

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +       +  +     + E+  Q+ ++E +
Sbjct: 696 KQFRVEMEDIMSSKGKSVEELKTQLEELEDE 726


>gi|225628069|ref|ZP_03786104.1| ATP-dependent chaperone ClpB [Brucella ceti str. Cudo]
 gi|225616894|gb|EEH13941.1| ATP-dependent chaperone ClpB [Brucella ceti str. Cudo]
          Length = 931

 Score = 40.6 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 83/249 (33%), Gaps = 32/249 (12%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP--- 480
           Y     +RL+ +  +  T       +  +             +  S+L+K  L++     
Sbjct: 309 YRGEFEERLKAVLSEVQTAAGQIILFIDEMHTLVGAGKTDGAMDASNLLKPALARGELHC 368

Query: 481 ---SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPE 535
              +  E       +   A L  ++Q +        +   +   L   + +         
Sbjct: 369 VGATTLEEY--RKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDS 426

Query: 536 EIHQ-------RLCERGF-GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK- 586
            +          + +R    + +  +D       +   +    + ++ +   Q     + 
Sbjct: 427 ALVAAATLSNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPEELDEIDRRIMQLKIEREA 486

Query: 587 -----------RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                      R + + ++  ++E++ A++TAK +AEK  + ++   ++  Q+ +  +  
Sbjct: 487 LKVETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAA--DLKRQLEEARNAL 544

Query: 636 AMIEGFGKM 644
           A+ +  G+ 
Sbjct: 545 AIAQRNGEF 553



 Score = 38.3 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/210 (9%), Positives = 66/210 (31%), Gaps = 14/210 (6%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++KY+ + +   R ++           +  +++    K +   K  + ++AL+     
Sbjct: 375 EEYRKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAATL 434

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +    +L   + S   E        +  ++            
Sbjct: 435 SNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPEELDEIDRRIMQLKIEREALK------ 488

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                 +       E  + D+ +   +  A ++  +       ++++Q+ +        +
Sbjct: 489 VETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAADLKRQLEEARNALAIAQ 548

Query: 614 TAILISI--------LHEVHIQIHQIESQE 635
                          + ++  Q+   ESQE
Sbjct: 549 RNGEFQKAGELAYGTIPQLEKQLADAESQE 578


>gi|149047544|gb|EDM00214.1| rCG36147 [Rattus norvegicus]
          Length = 609

 Score = 40.6 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 42/128 (32%), Gaps = 15/128 (11%)

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                      R       +   ++D  VR      A     +  +    Q+   L    
Sbjct: 311 AGRLDGASQQIRWASTELDKEKARVDSMVRHQESLQAKQRTLLQQLDCLDQEREELRGNL 370

Query: 589 RLLSRQKEEIEKQIAQVTAK-----------GEAEKTAILISILH----EVHIQIHQIES 633
                Q+ E+E+Q+  + ++            E +    +I+ L     E+  Q+ +++ 
Sbjct: 371 DEAEVQRSELEEQLQSLQSEREQGQCQLQAQQEKQDLEQVITDLQLTISELQQQLEELKE 430

Query: 634 QEAMIEGF 641
           +E ++  F
Sbjct: 431 RERLLVAF 438


>gi|123967762|ref|YP_001008620.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit
           ClpB [Prochlorococcus marinus str. AS9601]
 gi|123197872|gb|ABM69513.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit
           ClpB [Prochlorococcus marinus str. AS9601]
          Length = 920

 Score = 40.6 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 70/205 (34%), Gaps = 14/205 (6%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           F++ I +       ++K   +      S +++Q    K +      + E A+  +     
Sbjct: 367 FRETIEKDQALNNCFQKITVNEPSVELSAKILQGIKKKYESHHGIKISEEAVNYSAKLAD 426

Query: 496 AILQEQYQELADIRYDNNELQKLW-------SFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             + ++    + I   +    +L          +     E K    +E    L       
Sbjct: 427 RYISDKCLPDSAIDLIDEAAAQLKIESNNMPQIILQQ--ENKLNTIDEKLNNLQGDNIEA 484

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             K L+ + +     +   E N  ++R+  ++   L K    L++Q ++   +      +
Sbjct: 485 QEKLLNNRQQSEAKLNVLLE-NWNNLREEMEELSILMKEEDKLTKQIKDKSNR----EIE 539

Query: 609 GEAEKTAILISILHEVHIQIHQIES 633
            + +    L   L ++  +I ++E 
Sbjct: 540 NDLDYLEKLEEELSKIENEIQKLEE 564


>gi|169845181|ref|XP_001829310.1| hypothetical protein CC1G_00489 [Coprinopsis cinerea okayama7#130]
 gi|116509375|gb|EAU92270.1| hypothetical protein CC1G_00489 [Coprinopsis cinerea okayama7#130]
          Length = 873

 Score = 40.6 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 69/213 (32%), Gaps = 11/213 (5%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + ++L+ L      +          + +  +     Q  ++      K S+     E  
Sbjct: 131 ELDEKLRSLESILQADVKRLQDLLTASQKTEEVLKKEQARVRDLEKASKQSESSLKDEQD 190

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +          +++Y +L   +  + +LQ     +     E+     E   +   E  +
Sbjct: 191 RVK-------DWEKRYADLEAEK--DRQLQAERQTIEFLVSEKASLTTELQKREDFESKW 241

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
               ++L  +   +           V+V +  Q+      + + L  +  E+E+Q+ +VT
Sbjct: 242 QNAEEELQAERTKSQQLEQQLRTVQVEVGETTQRISEYQIKEKDLQEKTRELERQLQRVT 301

Query: 607 AKGEAE--KTAILISILHEVHIQIHQIESQEAM 637
                   +       L E+  Q+   +  E +
Sbjct: 302 TAANESRKEAEETGRRLQELTEQVQNDDRVERL 334



 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 22/221 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              + ++L+    +  ++ +   + W++    ++Q+  S +   + L KG    +  L E
Sbjct: 516 RDVVIEKLEASVDQLESDKAETDKKWQETLASKEQESGSAQTDFAELQKGYNQLQEEL-E 574

Query: 485 AAL--LLTL----INHPAILQEQYQELADIRYD----NNELQKLWSFLFSDFVEQKYFLP 534
           AAL  + TL     +H      + +E+  +       + EL  L   L +    Q     
Sbjct: 575 AALASIKTLEAQRSSHHQDASRKLEEIDRLSSSVQAQSEELADLRHELDARRKAQDE--E 632

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSR 593
           +EI +R        L  +L  +  +        ++   D  +   +  L+  ++   L  
Sbjct: 633 QEILERAQNE-LESLRTELSSKDEELERLREAVQSPTTDGPRSLDEEMLSSLRQQHAL-- 689

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +      QI  +      E      +  HE+  QI  ++ Q
Sbjct: 690 EISAAHSQIRALE-----ENVFAEQAKAHELQKQITALQDQ 725


>gi|38566922|emb|CAE76225.1| related to putative cytoplasmic structural protein [Neurospora
            crassa]
          Length = 2556

 Score = 40.6 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 33/326 (10%), Positives = 98/326 (30%), Gaps = 19/326 (5%)

Query: 323  GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382
            G+      A    D         ++    +      P + +          +  +    V
Sbjct: 1484 GNSADQTQAEVPTDNKPQLEPTSSKTKQDVGPEAT-PATKMDDKKVEETLYVPPQHQETV 1542

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            D   + +         +     +   +       ++  R    +   +R Q   +K   +
Sbjct: 1543 DTKAQEDQLKAQKVETERLEHEKAEQERVAREKAERAEREKAEREKAEREQVALEKAREK 1602

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP----SLREAALLLTLINHPAIL 498
                    +K  R + ++   +R      ++ +   +        E   +          
Sbjct: 1603 AEQEKAEREKAEREKAERERVEREKAREKLEQERIAREKAELEKAERERIAA-----EEA 1657

Query: 499  QEQYQELADIRYDNNELQKLWS--FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            +++ + L     +  E +++ +        +E+      E+ +   ER   E  ++   Q
Sbjct: 1658 RKKAE-LEKAELEKAERERIAAEKARKKAELEKAELEKAELEKAERERVAAEKARKKAEQ 1716

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRL--LSRQKEEIEKQIAQ----VTAKGE 610
             +         +A    +++  +Q     K+       R+K ++EK   +      A+ +
Sbjct: 1717 EKAEQERVEREKAQEKALQEKAEQERIARKKAEQEKAERRKADLEKAERERVALEEARKK 1776

Query: 611  AEKTAILISILHEVHIQIHQIESQEA 636
            AE+       +     ++ + + ++A
Sbjct: 1777 AEEEKAEQKRISRKKAELEKAKQEKA 1802


>gi|1477646|gb|AAB05427.1| plectin [Homo sapiens]
 gi|1477651|gb|AAB05428.1| plectin [Homo sapiens]
          Length = 4574

 Score = 40.6 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 55/193 (28%), Gaps = 23/193 (11%)

Query: 457  RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
            R ++     + +      +  ++ +  E  L    +          +        + ELQ
Sbjct: 2185 RQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ-------LEETDHQKNLLDEELQ 2237

Query: 517  KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT--------- 567
            +L +       ++     E    R+      +L  +++ + R   L              
Sbjct: 2238 RLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEA 2297

Query: 568  ----EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
                +      R       A   R      L++Q+   EK + +     +        + 
Sbjct: 2298 EKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAE 2357

Query: 621  LHEVHIQIHQIES 633
            L +   ++ Q ++
Sbjct: 2358 LLQQQKELAQEQA 2370



 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1705 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1764

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1765 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1802



 Score = 37.9 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 66/212 (31%), Gaps = 19/212 (8%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
               LQQ  Q+ +          ++  R   ++    R    + ++ K  +     E + L
Sbjct: 1417 AKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQA-EAAERSRL 1475

Query: 489  LTLINHPAILQEQYQELADIRY----DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                     ++    +L            ELQ L +       +++    E   +RL  +
Sbjct: 1476 RI----EEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEA--ERLRRQ 1529

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E  ++   +V  A    A TEA     R          +    L  Q EE E+++ Q
Sbjct: 1530 VQDESQRKRQAEVELASRVKAETEAAREKQRA--------LQALEELRLQAEEAERRLRQ 1581

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +   +    L +       ++    +  A
Sbjct: 1582 AEVERARQVQVALETAQRSAEAELQSKRASFA 1613



 Score = 37.6 bits (85), Expect = 6.5,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 78/268 (29%), Gaps = 23/268 (8%)

Query: 392  NRSFNTPDERAELEIHLKNCINHIK------DQKLRYYYSQAIR-----DRLQQLFQKYI 440
                 + D         +     I+       Q +R    Q        +R  +  ++  
Sbjct: 1237 RYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALLEEIERHGEKVEECQ 1296

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                 Y    K               + S   K K+           +    ++  +   
Sbjct: 1297 RFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTHYSELTTL 1356

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              Q +   ++ +  L+++         +Q+    E + +          L +   Q +  
Sbjct: 1357 TSQYI---KFISETLRRMEEE-ERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQ 1412

Query: 561  GLWSATT--EANIVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEAEKT 614
                A    +    +V +  + A+   ++ R +  + +++    E +I     + EA + 
Sbjct: 1413 AEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQAEAAER 1472

Query: 615  AILI--SILHEVHIQIHQIESQEAMIEG 640
            + L     +  V +Q+   E Q    EG
Sbjct: 1473 SRLRIEEEIRVVRLQLEATERQRGGAEG 1500


>gi|148544402|ref|YP_001271772.1| DNA repair protein RecN [Lactobacillus reuteri DSM 20016]
 gi|184153765|ref|YP_001842106.1| DNA repair protein RecN [Lactobacillus reuteri JCM 1112]
 gi|227363173|ref|ZP_03847307.1| DNA repair protein RecN [Lactobacillus reuteri MM2-3]
 gi|325682722|ref|ZP_08162238.1| DNA repair protein RecN [Lactobacillus reuteri MM4-1A]
 gi|148531436|gb|ABQ83435.1| DNA replication and repair protein RecN [Lactobacillus reuteri DSM
           20016]
 gi|183225109|dbj|BAG25626.1| DNA repair protein RecN [Lactobacillus reuteri JCM 1112]
 gi|227071779|gb|EEI10068.1| DNA repair protein RecN [Lactobacillus reuteri MM2-3]
 gi|324977072|gb|EGC14023.1| DNA repair protein RecN [Lactobacillus reuteri MM4-1A]
          Length = 559

 Score = 40.6 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 28/275 (10%), Positives = 77/275 (28%), Gaps = 15/275 (5%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK-LRYYYSQAI 428
             +        +         +  +        +         + +K     +    Q  
Sbjct: 127 DIQGQNEHQQLMQPETHLGMLDQFAAKEVQPLLQKYQEEYQAYSKLKAAVNKKQANEQQW 186

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             RL  L  +         +  +++    ++         ++ ++  ++      +A +L
Sbjct: 187 AQRLDMLRYQVNEIAEANLKENEEDELISERDRLEHFQQINNALQLAVTTFNEGEQAPVL 246

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                    +      +  I   ++    L   L   +   +    E   Q        E
Sbjct: 247 -------DQVATVMDSINAIAEFDDAYDNLSKALNDAYYALQDVANEASQQLDMLEFDDE 299

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-------LSRQKEEIEKQ 601
            L Q+++++   G         + DV + Y +                 L ++  E E +
Sbjct: 300 RLAQIEQRLTTIGDLEHKYGDTLADVLKYYDKIKKELDSMEAAADSSSDLEQRLGEAENK 359

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           I +   K    +      +  +VH Q+ ++  ++A
Sbjct: 360 IRETGRKLSQVRQKAAHELGKKVHQQLKELYMEKA 394


>gi|332848662|ref|XP_003315696.1| PREDICTED: myosin-3 [Pan troglodytes]
          Length = 1854

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 84/265 (31%), Gaps = 17/265 (6%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +    +D     + E       + +  +E         ++ +       + +   L ++ 
Sbjct: 1482 QVKSEIDRKIAEKDEEIEQLKRNYQRTVETMQSALDAEVRSRNEAIRLKKKMEGDLNEIE 1541

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
             +    +       K     + Q   +Q  +  +L       +  L+E   L  +     
Sbjct: 1542 IQLSHANRQAAETLKHLRSVQGQLKDTQLHLDDAL-----RGQEDLKEQ--LAIVERRAN 1594

Query: 497  ILQEQYQELADIRYDNNELQKLW-SFLFS-----DFVEQKYFLPEEIHQRLCERGFGELL 550
            +LQ + +EL          +KL    L         +  +        ++L E    +L 
Sbjct: 1595 LLQAEVEELRATLEQTERARKLAEQELLDSNERVQLLHTQNTSLIHTKKKL-ETDLMQLQ 1653

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
             +++   RDA       +  I D     ++          L R K+ +E+ +  +  + +
Sbjct: 1654 SEVEDASRDARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLD 1713

Query: 611  AEKTAIL---ISILHEVHIQIHQIE 632
              +   L      + ++  +I ++E
Sbjct: 1714 EAEQLALKGGKKQIQKLETRIRELE 1738


>gi|311694424|gb|ADP97297.1| chromosome segregation protein SMC [marine bacterium HP15]
          Length = 1164

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 72/231 (31%), Gaps = 11/231 (4%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           + +  R      + +  ++L            R  + +AR +  +   Q +  S  ++G+
Sbjct: 688 RSEAARDEAQTRLSEADRELSTLASRVSGLRARAEQIDARLQRIRDDIQDV--SENLEGQ 745

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                  RE   L       +  +E+ + L         L +L      D         +
Sbjct: 746 KESLQDAREDWQLALASTEDS-DEEKERLLEQRDTLRESLDRLRQEARHDRDHAHQLQLQ 804

Query: 536 EIHQRLCERGFGELLKQL----DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                    G  + + ++    +R      +   + E+    +     Q   L  R    
Sbjct: 805 LQTLHSQRDGLRQTIDRMQLQKERIDERLEILRESRESAEEPIEDLQMQLEGLLDRRLAE 864

Query: 592 SRQK---EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             +     +  ++I +   + E  ++      + EV  ++ +++ +   +E
Sbjct: 865 EEKLGAARDALEEIDREVREKEQGRSGTD-HRIQEVRSRLEKLKMESQALE 914


>gi|300116724|ref|NP_001177854.1| nuclear mitotic apparatus protein 1 [Gallus gallus]
 gi|299469458|emb|CBN80053.1| nuclear mitotic apparatus protein [Gallus gallus]
          Length = 2141

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 99/285 (34%), Gaps = 16/285 (5%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R        + + E         +R+    +     ER  LE  L+          
Sbjct: 762  EELARRQALETRLQQVAEERREETAALQRQLAEVAKGEEGERGRLEKRLQELSREHGQAC 821

Query: 420  LRYYYSQA-IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             R    Q  + +   ++ +    +         + AR ++++G  Q  + S+   GKL  
Sbjct: 822  QRLQAEQERVAELEARVARMASEQQEQLAALQDQLARAKEKEGKEQEKLASAERVGKLEA 881

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +      AL           +   +EL++ R    EL+ + +   S+       L E   
Sbjct: 882  EVRKASEAL-----------EAVSKELSEERLKFKELEAVATQEASEVARLSAALEEAAR 930

Query: 539  QRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KE 596
            +   E     E  K+L +++ DA    A  +A  V++    Q ++   +  R   +Q   
Sbjct: 931  EHGQELARREEEAKRLQKELEDAKADCAAEKARKVELEVQLQNSINEQRVERSAHQQELA 990

Query: 597  EIEKQIAQVTAKGEAEKTAILIS--ILHEVHIQIHQIESQEAMIE 639
               + I +   + +  +   +     L ++   + +++ + A +E
Sbjct: 991  RSLELIEEKEGELDELRLKNVSRGEELRDLQKTVSKLKGELASVE 1035


>gi|290992534|ref|XP_002678889.1| predicted protein [Naegleria gruberi]
 gi|284092503|gb|EFC46145.1| predicted protein [Naegleria gruberi]
          Length = 1671

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 92/260 (35%), Gaps = 6/260 (2%)

Query: 379  LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY-YYSQAIRDRLQQLFQ 437
                +    R           E  +         + +KD   R     + + D+L +  Q
Sbjct: 783  KLKNEEQALRHKLLSEERKRRELEQTTEKFFEEESQLKDMLEREKLLRKQLEDKLSKSKQ 842

Query: 438  KYITEHSGYGRYWKKNARHRDQKGPSQRLM-QSSLVKGKLSKKPSLREAALLLTLINHPA 496
            +   +            R +  +    R+  +  + K K  +     E  LL        
Sbjct: 843  QLEEQQRIVREQEDDLKRKQLDQEQKLRVQIEMEVAKRKEEEMDRKMEQQLLKHKEEQQR 902

Query: 497  ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDR 555
            +L+EQ +EL   + +  E+  +   +      ++  L +++ + L ++   E  L +L  
Sbjct: 903  LLKEQEEELKRRQAEQEEI--IRKQIELIAKRKEEELSKKMEEALRKKLEEEQNLVKLKG 960

Query: 556  QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEAEKT 614
            Q           E    ++ +  ++ +    R R +  +++ + KQ+  ++    +  + 
Sbjct: 961  QEEVLRQKLLNEERKRRELEEETERKIQEENRLREMLEKEKSLRKQLENKLNESKQQLED 1020

Query: 615  AILISILHEVHIQIHQIESQ 634
               ++  HE  ++ +Q+E +
Sbjct: 1021 QQRLAKEHEDEMRRNQLEQE 1040


>gi|229553937|sp|B0KWC9|CING_CALJA RecName: Full=Cingulin
          Length = 1198

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 97/286 (33%), Gaps = 25/286 (8%)

Query: 365  CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             Y + A  ++        D   + E  +   N   +  +            +D       
Sbjct: 873  DYKEKARREVADAQRQAKDWASEAEKTSGGLNRLQDEIQRLRQALQACQAERDTAQLD-- 930

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + +  RLQ L Q+   +        ++     ++    +  +       +L      R 
Sbjct: 931  KELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEKVSRLEAELDEEKNTVELLTDRVNRG 990

Query: 485  A----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDFVEQKY 531
                  L   L+   +  Q+   +   +   N +L+ +L S           S    Q  
Sbjct: 991  RDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQ 1050

Query: 532  FLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             L E +     E+       ++L+R+V++  +       ++ D +        L  R + 
Sbjct: 1051 LLQERLQAEEREKTVLQSTNRKLERKVKELSIQIEDERQHVNDQKDQ------LSLRVKA 1104

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
            L RQ +E E++I ++   G  +K    +   HEV+ Q+  +I+S E
Sbjct: 1105 LKRQVDEAEEEIERLD--GLRKKAQRELEEQHEVNEQLQARIKSLE 1148



 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 74/220 (33%), Gaps = 8/220 (3%)

Query: 425  SQAIRDRLQQLFQK-YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             Q    RL+Q  Q       +          R +  +  ++   +S   + +  K    +
Sbjct: 906  LQDEIQRLRQALQACQAERDTAQLDKELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEK 965

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
             + L   L      ++     +   R   +++ +L + L  +   ++    ++I      
Sbjct: 966  VSRLEAELDEEKNTVELLTDRVNRGR---DQVDQLRTELMQERSARQDLECDKISLERQN 1022

Query: 544  RGFGELLKQLDRQVRDA---GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            +     L   +   + +       +  +     ++   ++   L    R L R+ +E+  
Sbjct: 1023 KDLKTRLASSEGFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERKVKELSI 1082

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            QI +   +   ++   L   +  +  Q+ + E +   ++G
Sbjct: 1083 QI-EDERQHVNDQKDQLSLRVKALKRQVDEAEEEIERLDG 1121



 Score = 37.9 bits (86), Expect = 4.7,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 61/183 (33%), Gaps = 9/183 (4%)

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NN 513
           + +++    Q   QS  V G+   +   ++ ++L        +  ++ +EL +  +    
Sbjct: 631 QTQEELKELQAERQSQEVAGRHRDRELEKQLSVLR-------VEADRGRELEEQNFQLQK 683

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            LQ+L          +     E              L++   +  +        E  + +
Sbjct: 684 TLQQLRQNCEEASKAKMVAEAEAAVLGQRRAAVETTLRETQEENDEFRRRILGLEQQLKE 743

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            R       A+  R R   ++ E  ++Q+ +       E+   L +    +  ++ + + 
Sbjct: 744 TRGLVDGGEAVEARLRDKLQRLEAEKQQLEEALNA-SQEEEGSLAAAKRALEARLEEAQR 802

Query: 634 QEA 636
             A
Sbjct: 803 GLA 805



 Score = 37.9 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 62/209 (29%), Gaps = 17/209 (8%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLTL 491
           Q+ +         G    K    +D     + L +    K ++ ++  LRE  L  L   
Sbjct: 440 QVVELQNKLKQVQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALKGA 499

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           +    +     +     +    + ++L   +     +      E   ++        L +
Sbjct: 500 LKE-EVASRDQEVEHVRQQCQRDTEQLRKSMQDATQDHAVLEAE---RQKMSALVRGLQR 555

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-----------LSRQKEEIEK 600
           +L+    + G W +  + N  ++R   Q+ L L                 L R+ E+   
Sbjct: 556 ELEETSEETGHWQSMFQKNKEELRATKQELLQLRMEKEEMEEELGEKIEVLQRELEQARA 615

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
                      +K       L E+  +  
Sbjct: 616 SAGDTRQVEVLKKLCQTQEELKELQAERQ 644


>gi|237834687|ref|XP_002366641.1| hypothetical protein TGME49_040220 [Toxoplasma gondii ME49]
 gi|211964305|gb|EEA99500.1| hypothetical protein TGME49_040220 [Toxoplasma gondii ME49]
          Length = 1518

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 84/216 (38%), Gaps = 10/216 (4%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK--KNARHRDQKGPSQRLMQSSLVKGKLSK 478
           R    Q  RD L+++ +    + S   R  +   +    +++   + L ++     KL  
Sbjct: 445 RSDCLQQQRDELRRMAEAVEVQASTLTRLEELLDSQSRLEREQKEEILREAFEAAAKLDT 504

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +    E A    L+    +     +++       +  + L+S + +   + +    EE  
Sbjct: 505 ELEQVETAFDSELLR--GLQAGAREQIRAADGVADLAEHLFSAVANLHAQLR--DIEETR 560

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++   R      ++ + + +     +   EA    VR+      A  + FR LS +++  
Sbjct: 561 KQAAARAKENAKRRHEEEEQTLNREA---EALQEHVRECEAATQANAREFRELSTRRKAA 617

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +++    ++ E E+       + E+  Q+ ++ES+
Sbjct: 618 TEELHAAVSQLENEQV-ETRGKIEELRSQLAELESE 652


>gi|125533553|gb|EAY80101.1| hypothetical protein OsI_35273 [Oryza sativa Indica Group]
          Length = 901

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 77/217 (35%), Gaps = 21/217 (9%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH-- 494
           ++     S   +     A     + P      +       +   SL E  +L T+ +   
Sbjct: 2   REEGGIASPGEKPIPNGASPNHSQSPKICSRITDNETQGTATAKSLNEKLVLETVSDDSS 61

Query: 495 --------PAILQEQYQELADIRYDNNELQKLWSFLF-----SDFVEQKYFLPEEIHQRL 541
                   P +      E        +  +KL S L       D V+Q   + EE     
Sbjct: 62  TQHCQSPQPDVFTNVKDE-DMQDSVESLSEKLASALLTINAKDDLVKQHTKVAEEAVAGW 120

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +      +  L R +  +   +A+ +  +  +    ++ +   ++ R    Q+E+I   
Sbjct: 121 EQAEAE--VSTLKRLLEASTQKNASLDDQVNHLDDALKECVRQLRQAR--EEQEEKIRDA 176

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           +A+ T + ++ K+  L + ++E+  Q+   + + A +
Sbjct: 177 VAKKTQELDSHKS-ELQNHIYELKQQLEAAKLEAATV 212


>gi|119607889|gb|EAW87483.1| hCG2021101, isoform CRA_a [Homo sapiens]
          Length = 1067

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 32/299 (10%), Positives = 80/299 (26%), Gaps = 29/299 (9%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK----DQ 418
           +R +     +    E           E  +       +        K     I+     +
Sbjct: 150 LRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISE 209

Query: 419 KLRYYYSQAIRDRLQ-------QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
             +    + +  RLQ       +     +           K    +D +     L     
Sbjct: 210 AGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDP 269

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
               +  + S +E  L +    +  +     + L+ I  +  E++ L   L    +    
Sbjct: 270 KHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANE 329

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-------DVRQGYQQALAL 584
            L +++   +   G  E L  +  Q   A                   +V Q   Q   +
Sbjct: 330 ALKKDLEGVIS--GLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIV 387

Query: 585 YKRFRLLSRQKEEIEKQIAQVTA--------KGEAEKTAILISILHEVH-IQIHQIESQ 634
                 + ++  E+E  + +           +G+       +     +   + +Q++ +
Sbjct: 388 AMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEE 446


>gi|113955592|ref|YP_731918.1| ATPases with chaperone activity, ATP-binding subunit [Synechococcus
           sp. CC9311]
 gi|113882943|gb|ABI47901.1| ATPases with chaperone activity, ATP-binding subunit [Synechococcus
           sp. CC9311]
          Length = 942

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 16/133 (12%)

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR-QGYQQ 580
           L  +   Q         Q + +      L++++  V  A          +   R +   +
Sbjct: 467 LIDEAAAQLKMDVTSKPQVVEDAEAD--LRRVELAVLAAEQAPEGERVQLQRNRLEASDR 524

Query: 581 ALALYKRFRLLSRQKEEIEK----------QIAQVTAKGEAEKTAIL-ISILHEVHIQIH 629
              L +R++    Q EE+ +           IA+    G  E+ A L    LH V  +  
Sbjct: 525 LSQLRERWQAEREQLEELRQLLQEDEDLRHAIAEAERDGNLEEAARLQYDQLHRVQQRRA 584

Query: 630 QIESQ--EAMIEG 640
            +E    EA  EG
Sbjct: 585 DLEQSLNEAQEEG 597


>gi|57642146|ref|YP_184624.1| chromosome segregation protein [Thermococcus kodakarensis KOD1]
 gi|68565874|sp|Q5JHN1|RAD50_PYRKO RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|57160470|dbj|BAD86400.1| DNA double-strand break repair ATPase Rad50 homolog [Thermococcus
           kodakarensis KOD1]
          Length = 883

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 67/225 (29%), Gaps = 15/225 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + +  +   +               +K       +  ++   + S      ++  +  E
Sbjct: 254 LRELEAKKSGIQSMIRETEKRVEELKEKVKELESLEEKAKEYERLSRFYRNFTEGINRIE 313

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             LL T       L+E+  EL+       EL K    L  +    +  L      +    
Sbjct: 314 K-LLATYSQQAENLRERIDELSKKEARVKELLKEKEGLQKELGALEEDLKAYQRAKELMA 372

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-------RQKEE 597
               L K+L     +     A  +       +  ++   +  R   L        +   E
Sbjct: 373 NLERLKKRLTLSEEEIEKLEAEIQKARERKEEIMKELEEIGSRRGELKSIAGERNKALME 432

Query: 598 IEKQI-------AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           ++K          ++T +   E      + L E+  ++ ++E +E
Sbjct: 433 LKKAKGRCPVCGRELTEEHRKELLEKYTAELKEISAEMKELEKRE 477



 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 79/242 (32%), Gaps = 22/242 (9%)

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           L   + + + ++     ++   E     +  KK      +   + +  +      ++ ++
Sbjct: 447 LTEEHRKELLEKYTAELKEISAEMKELEKREKKLRAELVEVEKTLKKERELFALKEVLEQ 506

Query: 480 PSLREAALLLTLINHPAILQEQYQELAD-IRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
               E  L    +       E+ +EL   +     E++ L   +    + +K     E  
Sbjct: 507 IRETEEKLKEYDLEKLEEANEKAEELKKKLAGLEGEIKSLEDEIKKGELLKKKLALVEKK 566

Query: 539 QRLCERGFGELLKQLDR-------------------QVRDAGLWSATTEANIVDVRQGYQ 579
            R  E     LL +L +                     R   L  A  E    +      
Sbjct: 567 LRELEEERASLLGELKKLGFGDVKELEERLKELEPAYKRYIELRPARDELKREEDLLKSL 626

Query: 580 QAL--ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           +    A+ K     S++ EE+ K++ ++    + ++   L     E+  ++  +E++   
Sbjct: 627 KLDLTAILKEIEKTSKRVEELRKRVEELEKSYDKDRHEELKGKTRELSNELAGLEARLKS 686

Query: 638 IE 639
           +E
Sbjct: 687 LE 688


>gi|116490585|ref|YP_810129.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Oenococcus oeni PSU-1]
 gi|116091310|gb|ABJ56464.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Oenococcus oeni PSU-1]
          Length = 823

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 46/149 (30%), Gaps = 8/149 (5%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           I     L+ ++  +        +  ++   L   + E            + +      +K
Sbjct: 330 IESDQALERRFASVTIDEPSQEDSVEILKGLRPRYEEHHRVN-------ISDEAINAAVK 382

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
              R + D  L     +       +     +    +   L RQ   +  Q+    + G+ 
Sbjct: 383 LSSRYIADRFLPDKAIDLMDEAAAKVRIDTVQPEDKKVDLERQLNGLRDQLDDAVSSGDF 442

Query: 612 EKTAILISILHEVHIQIHQIESQEAMIEG 640
           ++   +     ++  ++  +E  + +I G
Sbjct: 443 DQATKIRQQEIKIRKELAVVE-TDNLING 470


>gi|332251706|ref|XP_003274987.1| PREDICTED: ankycorbin isoform 6 [Nomascus leucogenys]
          Length = 909

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 102/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 523 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 580

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L+
Sbjct: 581 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLK 640

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 641 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 699

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 700 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 759

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 760 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 797


>gi|328869860|gb|EGG18235.1| myosin II heavy chain [Dictyostelium fasciculatum]
          Length = 2113

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 67/234 (28%), Gaps = 30/234 (12%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            +    + +R +L    +  +       +  + N + +      ++    S    K  +  
Sbjct: 1729 KELELEEVRKKLDSEVENNVQLEDFKKKNQEINDQLKKDFESEKKARNESERAKKRIES- 1787

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                         +  +      E  +      +L+K    L     +       +    
Sbjct: 1788 ------------ENEDLSARLDAETKNRIRAEKDLKKQVKDLKDTKGQLIDESATKTRTA 1835

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEAN-------IVDVRQGYQQA----LALYKRFR 589
            +      + + +L  +V  A     + E +       I D+R          + L K  R
Sbjct: 1836 VGAAKLEDQIDELRAKVDAAEADRLSYEKSKKALEGQIEDLRATIDDEGKYKMRLEKEKR 1895

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISIL------HEVHIQIHQIESQEAM 637
             L  + E++ +QI          + A  +  L        +  +I   ES E +
Sbjct: 1896 ALEGELEDLREQIEDADESRSEAENARRLQELDLEEAQRNLQKEIDAKESAEDL 1949



 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 74/247 (29%), Gaps = 19/247 (7%)

Query: 399  DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
            D + + E+ L+     +  +       +  + + Q++  +   +     +   +N   R 
Sbjct: 1724 DIKRKKELELEEVRKKLDSEVENNVQLEDFKKKNQEINDQLKKDFESEKKA--RNESERA 1781

Query: 459  QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
            +K         S      +K     E  L   + +      +   E A          KL
Sbjct: 1782 KKRIESENEDLSARLDAETKNRIRAEKDLKKQVKDLKDTKGQLIDESATKTRTAVGAAKL 1841

Query: 519  WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN-------I 571
               +     +      + +     ++     ++ L   + D G +    E         +
Sbjct: 1842 EDQIDELRAKVDAAEADRLSYEKSKKALEGQIEDLRATIDDEGKYKMRLEKEKRALEGEL 1901

Query: 572  VDVRQGYQQA--------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
             D+R+  + A         A   +   L   +  ++K+I    +  +      L   + E
Sbjct: 1902 EDLREQIEDADESRSEAENARRLQELDLEEAQRNLQKEIDAKESAED--LKNNLQREVIE 1959

Query: 624  VHIQIHQ 630
            V  ++ +
Sbjct: 1960 VKGRLEE 1966


>gi|296119490|ref|ZP_06838048.1| putative ATPase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967373|gb|EFG80640.1| putative ATPase [Corynebacterium ammoniagenes DSM 20306]
          Length = 889

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 69/218 (31%), Gaps = 10/218 (4%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           ++L +L++  + +         +  R   ++  +QR      +   L  +   +    + 
Sbjct: 485 EKLTELYETELEKLGCKNTNEVREKRDTYKELVAQRQQLEIQLDRILDGEDLEQLRVRVA 544

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR-LCERGFGE 548
            L   P +  E     +D    +     + +   ++          +   +   ER    
Sbjct: 545 ALGESPEVTTENA---SDEDAIDKARADISAAEEAEESANNDLSNAQAKLKPWEERPAHT 601

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL------ALYKRFRLLSRQKEEIEKQI 602
            L +++ +   A        A+I +  +    A           + +   +  ++  +++
Sbjct: 602 ALIRIESEAEQALKLKERLAADIENANEKISDAELEGQFQKAEAKVQECKKAVQKAREEL 661

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
                +      A   + L  +  Q+   E+Q+  + G
Sbjct: 662 DAANPELAQSLAAGAQAQLVNLQKQLRDSENQQNTLTG 699


>gi|281346172|gb|EFB21756.1| hypothetical protein PANDA_008168 [Ailuropoda melanoleuca]
          Length = 1471

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 66/224 (29%), Gaps = 22/224 (9%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRY---WKKNARHRDQKGPSQRLMQSSLVKGK 475
             +    Q +R+ L+ L +          R      K      +K     L        +
Sbjct: 685 AEQEASLQRLREELESLQRAERASLEQRSRQTLEQLKEELEASEKREQALLNAEKEAALQ 744

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLP 534
             ++   RE       +      +E   EL  +        +++   L     E +    
Sbjct: 745 KLREQLDRERKEATAALE-----REHRAELERLSSSLEAKHREVVRSLRKKTEEAQKKEA 799

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            ++ + L         +       +  L     E      R+            R + + 
Sbjct: 800 AQLQENLGRAEQRAQQRVHQVLEYEQELSGLLREKRQEVERE----------HERKMDKM 849

Query: 595 KEEIEKQIAQVTAKGEAEKT---AILISILHEVHIQIHQIESQE 635
           KEE ++ +A+   + EAE+    A L+  L     ++ +   +E
Sbjct: 850 KEEHQRVVAEAREQYEAEERKQRAELLGHLTGELERLRRSHERE 893


>gi|224053659|ref|XP_002189101.1| PREDICTED: similar to 6330417G02Rik protein, partial [Taeniopygia
           guttata]
          Length = 356

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 83/223 (37%), Gaps = 14/223 (6%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + +R +L  +  +   E S   +  ++  +   Q    ++   + +V     K    +  
Sbjct: 26  EELRAKLTDIQIELQQEKSKVSKLEREKNQEVKQIKEHEQHKSTVVVTELKVKLHEDKMK 85

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            L    +    + Q + + L  I+  +NE+Q+L + L +        +   +     E  
Sbjct: 86  EL--QAVRETLLRQHEAELLRVIKIKDNEIQRLQTLLNAVREGGPDKVKTVLLTEAKEEA 143

Query: 546 FGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL---------YKRFRLLSRQK 595
                ++++  Q   + L  A  +  + +      QA  +         +     ++R K
Sbjct: 144 KKGFEVEKIKMQQEISELKGAKKQ--VEEALTMVIQADKMKAAEIRSVYHLHQEEITRIK 201

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            E E++I ++  + + +        + E+   I ++E + A++
Sbjct: 202 RECEREIRRLEQQLDEKDARRFQLKIAELSGIIRKLEDRNALL 244


>gi|194379634|dbj|BAG63783.1| unnamed protein product [Homo sapiens]
          Length = 1642

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 98/311 (31%), Gaps = 46/311 (14%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R        +   + L  +++  + E E++     ++       L+  +  + DQ  R  
Sbjct: 1196 RDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREK-----RELEGKLATLSDQVNRRD 1250

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +      RL++  ++     +               K    +L ++ L + + +   +++
Sbjct: 1251 FESE--KRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQL-KNQLEESEFTCAAAVK 1307

Query: 484  EAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY----------- 531
                +   I    + + +  +    +    + LQ+  + + +   E +            
Sbjct: 1308 ARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKA 1367

Query: 532  ---------FLPEEIHQRLCER-----GFGELLKQLDRQVRDAGLWSATT------EANI 571
                         ++  +L E         E L+ L  QV                EA I
Sbjct: 1368 AVAQASRDLAQINDLQAQLEEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKI 1427

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVH 625
             ++    +      KR   L+ + +E  +++ +           E E+   L   L +  
Sbjct: 1428 RELETRLEFERTQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTK 1487

Query: 626  IQIHQIESQEA 636
             ++ ++  +EA
Sbjct: 1488 EEMGELARKEA 1498



 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 91/284 (32%), Gaps = 29/284 (10%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             +      ++  VD   KR  +        E+       +   +   D +      Q ++
Sbjct: 982  EWRLKYERAVREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADSEESQRALQQLK 1041

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNA---RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             + Q+L  +             +N    + + +             + KL ++   RE  
Sbjct: 1042 KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEEAQREKLQREKLQREKD 1101

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCE- 543
            +L  L    ++ Q+  ++  DI     ++  L + L   S    +      ++ ++L + 
Sbjct: 1102 ML--LAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDL 1159

Query: 544  --------RGFGELLK-----QLDRQVRDAGLWSATTEANIVDVRQ--------GYQQAL 582
                        E  K     +++R  +       + +  + + RQ           Q  
Sbjct: 1160 EAKVKDQEEELDEQAKLRLEMEMERMRQTHSKEMESRDEEVEEARQSCQKKLKQMEVQLE 1219

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
              Y+  + + R+K E+E ++A ++ +           +  ++  
Sbjct: 1220 EEYEDKQKVLREKRELEGKLATLSDQVNRRDFESEKRLRKDLKR 1263



 Score = 37.2 bits (84), Expect = 8.9,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 78/248 (31%), Gaps = 22/248 (8%)

Query: 403  ELEIHLKNCINHIKDQKL-----RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            +++  L++    +KDQ+           +   +R++Q   K +          +++ + +
Sbjct: 1151 KVKKQLRDLEAKVKDQEEELDEQAKLRLEMEMERMRQTHSKEMESRDEEVEEARQSCQKK 1210

Query: 458  DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
              K    +L +    K K+ ++    E  L            E  + L         L  
Sbjct: 1211 -LKQMEVQLEEEYEDKQKVLREKRELEGKLATLSDQVNRRDFESEKRLRKDLKRTKALLA 1269

Query: 518  LWSFLFSDFVEQKY--FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
                +               ++  +L E  F          V+         E   + + 
Sbjct: 1270 DAQLMLDHLKNSAPSKREIAQLKNQLEESEFT-----CAAAVKARKAMEVEIEDLHLQID 1324

Query: 576  QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA---------EKTAILISILHEVHI 626
               +   AL ++   L R+K EI+ ++ +                 + +  ++ ++++  
Sbjct: 1325 DIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKAAVAQASRDLAQINDLQA 1384

Query: 627  QIHQIESQ 634
            Q+ +   +
Sbjct: 1385 QLEEANKE 1392


>gi|195432579|ref|XP_002064294.1| GK19780 [Drosophila willistoni]
 gi|194160379|gb|EDW75280.1| GK19780 [Drosophila willistoni]
          Length = 1000

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 101/296 (34%), Gaps = 23/296 (7%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD+       +A EK    S+   D L  +    +         +      + I  ++ +
Sbjct: 418 PDATEAVQRLSALEKKFQTSIRERDALRIQIKTLKDELLNKIPKDELTECNDMIAGLQSE 477

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +   S+ I  +   + +    E +      K   +       S+RL +S   K    +
Sbjct: 478 GEK--LSKEILQQSIIIKKLRAKEKTSDTLLKKNGEQISLLSSESERLKRSLAAK---EE 532

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFVEQKYFLPE 535
               +  A+         + +E  ++ + I    + L  +   +  L  D  ++     +
Sbjct: 533 MERTQIEAVCKMTSEKRRVDEENAEQRSRIEDLQSRLSAVESSFDALKGDLHKRTRLEQD 592

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA------------ 583
            +      + + + +  L  ++R      A  E  + D  +   Q L             
Sbjct: 593 NLKS--ENQEYLQQINDLREKLRLTEHNLAKREQQLRDENRQLMQRLEMAELRAESSTQE 650

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           L +    L RQ E ++K + Q +   + E+   LI  L +  IQ+  ++  E++ +
Sbjct: 651 LSETTTPLIRQIESLQKTLNQRSESWQKEE-QHLIQRLEDSQIQLRSLQQLESVQD 705


>gi|166092120|gb|ABY82100.1| cingulin (predicted) [Callithrix jacchus]
          Length = 1204

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 97/286 (33%), Gaps = 25/286 (8%)

Query: 365  CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             Y + A  ++        D   + E  +   N   +  +            +D       
Sbjct: 879  DYKEKARREVADAQRQAKDWASEAEKTSGGLNRLQDEIQRLRQALQACQAERDTAQLD-- 936

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + +  RLQ L Q+   +        ++     ++    +  +       +L      R 
Sbjct: 937  KELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEKVSRLEAELDEEKNTVELLTDRVNRG 996

Query: 485  A----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDFVEQKY 531
                  L   L+   +  Q+   +   +   N +L+ +L S           S    Q  
Sbjct: 997  RDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQ 1056

Query: 532  FLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             L E +     E+       ++L+R+V++  +       ++ D +        L  R + 
Sbjct: 1057 LLQERLQAEEREKTVLQSTNRKLERKVKELSIQIEDERQHVNDQKDQ------LSLRVKA 1110

Query: 591  LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
            L RQ +E E++I ++   G  +K    +   HEV+ Q+  +I+S E
Sbjct: 1111 LKRQVDEAEEEIERLD--GLRKKAQRELEEQHEVNEQLQARIKSLE 1154



 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 74/220 (33%), Gaps = 8/220 (3%)

Query: 425  SQAIRDRLQQLFQK-YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             Q    RL+Q  Q       +          R +  +  ++   +S   + +  K    +
Sbjct: 912  LQDEIQRLRQALQACQAERDTAQLDKELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEK 971

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
             + L   L      ++     +   R   +++ +L + L  +   ++    ++I      
Sbjct: 972  VSRLEAELDEEKNTVELLTDRVNRGR---DQVDQLRTELMQERSARQDLECDKISLERQN 1028

Query: 544  RGFGELLKQLDRQVRDA---GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            +     L   +   + +       +  +     ++   ++   L    R L R+ +E+  
Sbjct: 1029 KDLKTRLASSEGFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERKVKELSI 1088

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            QI +   +   ++   L   +  +  Q+ + E +   ++G
Sbjct: 1089 QI-EDERQHVNDQKDQLSLRVKALKRQVDEAEEEIERLDG 1127



 Score = 37.9 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 61/183 (33%), Gaps = 9/183 (4%)

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NN 513
           + +++    Q   QS  V G+   +   ++ ++L        +  ++ +EL +  +    
Sbjct: 637 QTQEELKELQAERQSQEVAGRHRDRELEKQLSVLR-------VEADRGRELEEQNFQLQK 689

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            LQ+L          +     E              L++   +  +        E  + +
Sbjct: 690 TLQQLRQNCEEASKAKMVAEAEAAVLGQRRAAVETTLRETQEENDEFRRRILGLEQQLKE 749

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            R       A+  R R   ++ E  ++Q+ +       E+   L +    +  ++ + + 
Sbjct: 750 TRGLVDGGEAVEARLRDKLQRLEAEKQQLEEALNA-SQEEEGSLAAAKRALEARLEEAQR 808

Query: 634 QEA 636
             A
Sbjct: 809 GLA 811



 Score = 37.9 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 62/209 (29%), Gaps = 17/209 (8%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLTL 491
           Q+ +         G    K    +D     + L +    K ++ ++  LRE  L  L   
Sbjct: 446 QVVELQNKLKQVQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALKGA 505

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           +    +     +     +    + ++L   +     +      E   ++        L +
Sbjct: 506 LKE-EVASRDQEVEHVRQQCQRDTEQLRKSMQDATQDHAVLEAE---RQKMSALVRGLQR 561

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-----------LSRQKEEIEK 600
           +L+    + G W +  + N  ++R   Q+ L L                 L R+ E+   
Sbjct: 562 ELEETSEETGHWQSMFQKNKEELRATKQELLQLRMEKEEMEEELGEKIEVLQRELEQARA 621

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629
                      +K       L E+  +  
Sbjct: 622 SAGDTRQVEVLKKLCQTQEELKELQAERQ 650


>gi|56159917|gb|AAV80770.1| SP-A receptor subunit SP-R210 alphaS [Homo sapiens]
          Length = 1581

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 93/335 (27%), Gaps = 17/335 (5%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 1003 RRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 1062

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1063 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1122

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E  L   
Sbjct: 1123 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELEGKLATL 1181

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1182 SDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKNQLEESEFT- 1240

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1241 ----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1296

Query: 609  GEA---------EKTAILISILHEVHIQIHQIESQ 634
                         + +  ++ ++++  Q+ +   +
Sbjct: 1297 MNELMKKHKAAVAQASRDLAQINDLQAQLEEANKE 1331



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 96/311 (30%), Gaps = 46/311 (14%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R        +   + L  +++  + E E++     ++       L+  +  + DQ  R  
Sbjct: 1135 RDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREK-----RELEGKLATLSDQVNRRD 1189

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +      RL++  ++     +               K    +L    L + + +   +++
Sbjct: 1190 FESE--KRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKN-QLEESEFTCAAAVK 1246

Query: 484  EAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY----------- 531
                +   I    + + +  +    +    + LQ+  + + +   E +            
Sbjct: 1247 ARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKA 1306

Query: 532  ---------FLPEEIHQRLCER-----GFGELLKQLDRQVRDAGLWSATT------EANI 571
                         ++  +L E         E L+ L  QV                EA I
Sbjct: 1307 AVAQASRDLAQINDLQAQLEEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKI 1366

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVH 625
             ++    +      KR   L+ + +E  +++ +           E E+   L   L +  
Sbjct: 1367 RELETRLEFERTQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTK 1426

Query: 626  IQIHQIESQEA 636
             ++ ++  +EA
Sbjct: 1427 EEMGELARKEA 1437


>gi|74208441|dbj|BAE26405.1| unnamed protein product [Mus musculus]
          Length = 648

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 78/256 (30%), Gaps = 38/256 (14%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-----QAIRDRLQQLFQKYI---- 440
            +  +             L      IK++  R  +      + ++  ++ L ++      
Sbjct: 373 LKQVTRPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGIKDLSKEERLWEV 432

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                  +   + A+ ++ +    + + S   +    ++ +  E  + + L     IL E
Sbjct: 433 QRILTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVINILLAQENEILTE 492

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           Q + LA  ++       L   + S                  +     L  ++       
Sbjct: 493 QEELLAMEQF-------LRRQIAS-----------------EKEEIDRLRAEIAEIQSRQ 528

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
               + TE    D     +    L      L RQ EE+E +   +      E+       
Sbjct: 529 QHGRSETEEYSSDSESESEDEEELQLILEDLQRQNEELEIKNNHLNQAVHEER-----EA 583

Query: 621 LHEVHIQIHQIESQEA 636
           + E+ +Q+  ++ Q A
Sbjct: 584 IIELRVQLRLLQMQRA 599


>gi|15616162|ref|NP_244467.1| cell wall-binding protein [Bacillus halodurans C-125]
 gi|10176224|dbj|BAB07319.1| cell wall-binding protein [Bacillus halodurans C-125]
          Length = 461

 Score = 40.6 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 77/228 (33%), Gaps = 10/228 (4%)

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           + I+D K        I D  ++  +K   +        +      D     +RL +    
Sbjct: 23  SSIEDAKANSSLQNQISDVQKERQEKQQEKQKTEAELKEVEKELGDITAEIERLDKEVEE 82

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
                ++       +   +      ++   + +A+        + L     + +      
Sbjct: 83  TSGKIQEKREEIEEVQAEIEELKEQIEILEERIAERD------ELLKDRARAMYQNGGSI 136

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              E+   L  + FG+ L ++      A       EA+I D R   +    + ++   L 
Sbjct: 137 DYLEVI--LGAKSFGDFLDRVSALSVIAEQDRGILEAHIEDHRLLEEAKAQVEEKLETLE 194

Query: 593 RQKEEIEKQIAQVTA-KGEAEKTA-ILISILHEVHIQIHQIESQEAMI 638
               E+E  +AQ+   + E EK    L S   E+H  +  +E+ E ++
Sbjct: 195 GHLVELENLMAQLEEQQKEKEKVMGELASREDELHGDLESLENDEELL 242


>gi|317419341|emb|CBN81378.1| Serine/threonine-protein kinase TAO2 [Dicentrarchus labrax]
          Length = 1164

 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 92/313 (29%), Gaps = 42/313 (13%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD--- 417
             ++         L+       ++  ++          +   +L     N    +KD   
Sbjct: 593 ECLQQLQAEEEAGLLRRQRQYYELQCRQYKRKMLLARHNLEQDLLREELNKKQTLKDLEC 652

Query: 418 -QKLRYY-YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
              LR++  +Q +  R   L Q    E        +   +    K   Q L Q   V+ +
Sbjct: 653 AMLLRHHESTQELEFRQLGLVQHTRAELIRTQHQTELTNQMEYNKRREQELRQKHAVEVR 712

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              K    +   +                    +    + + L + L            +
Sbjct: 713 QQPKSLKSKELQIKRQFQD------------TCKIQTRQYKALRNHLLE---NTPKSDHK 757

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL---- 591
            + +RL +    +L    ++         +T    + + ++   + L +  +  L     
Sbjct: 758 AVLKRLKDEQTRKLAILAEQYDHSINDMLSTQALRLDETQEAEYKVLRMQLQQELELLNA 817

Query: 592 -------------SRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                         R+ +++E+++     +  +   E+   L +   E    + + ++ E
Sbjct: 818 YQSKIKIHTDTQHEREVKDLEQRVSIRRALLEQRIEEEMLSLQNERSERIRTLLERQASE 877

Query: 636 AMIEGFGKMSGRL 648
             IE F   S RL
Sbjct: 878 --IESFDSESLRL 888


>gi|301777660|ref|XP_002924242.1| PREDICTED: myosin-7-like [Ailuropoda melanoleuca]
          Length = 1945

 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 39/123 (31%), Gaps = 3/123 (2%)

Query: 514  ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            EL ++   +     E++            +R    L   L+ + +         +    D
Sbjct: 1558 ELAQVKDDIDRRIHEKEEEFEATRKNH--QRAIESLQASLEAEAKGRAEALRLKKKMETD 1615

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-ILISILHEVHIQIHQIE 632
            + +   Q     K    L +  + +++QI  +  + + +      +   + +  +   + 
Sbjct: 1616 LNEMEIQLDHANKNNSELVKTLKRLQQQIKDLQIQMDEDARQHEELREQYNLQERRLSLL 1675

Query: 633  SQE 635
              E
Sbjct: 1676 QTE 1678


>gi|300676892|gb|ADK26764.1| coiled-coil domain containing 88A [Zonotrichia albicollis]
          Length = 1881

 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 99/308 (32%), Gaps = 36/308 (11%)

Query: 366 YGKTAFEKLIVESLP--LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
             K + +    +S          ++  E    N+  +   LE   ++    +   + R  
Sbjct: 515 QEKQSLQNSQNQSKDLLKEKAQLEKTLEALRENSERQIKLLEQENEHLNQTVASLRQRSQ 574

Query: 424 YSQAIR----DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            S   R    ++  ++  + I E S      +   +   ++    +       + +    
Sbjct: 575 ISAEARMKEIEKENKILHESIKETSSKLNKMEFEKKQVRKELEHYKEKGERAEELENELH 634

Query: 480 PSLREAALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +E  LL   I +  I  E+ + L     D+  +N +L+K    L +   + +    E
Sbjct: 635 RLEKENELLQKKITNLKITCEKIEALEQENSDLETENRKLKKTLDSLKNLTFQLESLEKE 694

Query: 536 EIHQRLCERGFGELLKQLD---RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                         ++ L     +V    L +   E+    +++  +   A +K+   L 
Sbjct: 695 NSQLDEENLELRRTIESLKCTSIKVAQLQLENKELESEKEQLKKSLELMKASFKKTERLE 754

Query: 593 ---------------------RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                                ++ +++E ++  +  +   +     +  L     ++ Q+
Sbjct: 755 VSYQGLDTENQRLQKALENSNKKIQQLESELQDLETEN--QTLQKNLEELKISSKRLEQL 812

Query: 632 ESQEAMIE 639
           E +  ++E
Sbjct: 813 EKENKLLE 820



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 72/231 (31%), Gaps = 20/231 (8%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    +     L+Q   +   +     +  K+  +  + K  +       +   +   K 
Sbjct: 808  RLEQLEKENKLLEQETSQLEKDKKQLEKENKRLRQQAEIKDSTLEENNVKISNLERENKS 867

Query: 481  SLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +E  +   + +    + +E  + +     D   L  L   L +          E++  
Sbjct: 868  LFKEIVVYKESCLRLKELEKENKELVKRATIDKKTLVTLREDLVN----------EKLKT 917

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEI 598
            +       +L  +L++   +        +++    +    +  +  K+   +  +    +
Sbjct: 918  QQMNNDLEKLAHELEKIGLNKERLLHDEQSSDDRYKLLESKLESTLKKSLEIKEEKIAAL 977

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIEGFGKMSG 646
            E ++ + T          L   L  V      + Q + +E M++     SG
Sbjct: 978  EARLEESTNLN-----QQLRQELKTVKKNYEALKQRQEEERMVQNSPPRSG 1023



 Score = 37.2 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 54/159 (33%), Gaps = 27/159 (16%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR--LCERGFGELLKQLDRQ 556
           +E  + +  + +D      + + +      Q+     +      L +     LLK +   
Sbjct: 139 EEFIERIQSLDFDTRA--AVAAHIQEVTHNQENVFDLQWMDVIVLTQEYVEPLLKNMALH 196

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRF------------------RLLSRQKEEI 598
           ++            I+++ +  +  L                        + LS +  + 
Sbjct: 197 LKRLIDERDEHSETIIELSEE-RDCLRFLPHASAAQSPCGSPGMKRTESRQHLSVELADA 255

Query: 599 EKQIAQVTAKGEAEKTAILI---SILHEVHIQIHQIESQ 634
           + +I ++  + E EKT  L+     L ++  ++ +++ +
Sbjct: 256 KAKIRRLRQELE-EKTEQLLDCKQELEQMEAELKRLQQE 293


>gi|284048029|ref|YP_003398368.1| Peptidase M23 [Acidaminococcus fermentans DSM 20731]
 gi|283952250|gb|ADB47053.1| Peptidase M23 [Acidaminococcus fermentans DSM 20731]
          Length = 377

 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 75/231 (32%), Gaps = 17/231 (7%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +++ I ++  QL +          +   K     +         +      +       R
Sbjct: 23  WAETIEEKRAQLDEIQQKLGEKDAQLEDKKKEISNAMERLILTQEELAEAKRKLAAIESR 82

Query: 484 EAAL-LLTLINHPAILQEQYQELADIRYDNNELQKLWS--------FLFSDFVEQKYFLP 534
           + AL +    N  A+  +Q +           L+ ++          L      + +   
Sbjct: 83  QQALSIKIRQNEAALAAKQKEYDKSRSVYKKRLRDIYENGQVNYLDVLLGAADFRDFSSR 142

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + QR+  R F  L+ +L+ Q           +A + D+R+    A A  ++ + +  Q
Sbjct: 143 MYLLQRVIRRDFA-LIDRLEEQREALLQQ----KAELDDIRKQLAAAHAESQKEKEIVAQ 197

Query: 595 KEEIEKQIAQ---VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           K    +++ +           +   L     E+   I ++E +  M+   G
Sbjct: 198 KTVERQKLYEQALAEKAQLDAEYEELQRNSQEITAMIQRMEQEGRMMPQAG 248


>gi|260567643|ref|ZP_05838113.1| chaperone clpB [Brucella suis bv. 4 str. 40]
 gi|260157161|gb|EEW92241.1| chaperone clpB [Brucella suis bv. 4 str. 40]
          Length = 874

 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 83/249 (33%), Gaps = 32/249 (12%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP--- 480
           Y     +RL+ +  +  T       +  +             +  S+L+K  L++     
Sbjct: 252 YRGEFEERLKAVLSEVQTAAGQIILFIDEMHTLVGAGKTDGAMDASNLLKPALARGELHC 311

Query: 481 ---SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPE 535
              +  E       +   A L  ++Q +        +   +   L   + +         
Sbjct: 312 VGATTLEEY--RKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDS 369

Query: 536 EIHQ-------RLCERGF-GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK- 586
            +          + +R    + +  +D       +   +    + ++ +   Q     + 
Sbjct: 370 ALVAAATLSNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPEELDEIDRRIMQLKIEREA 429

Query: 587 -----------RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                      R + + ++  ++E++ A++TAK +AEK  + ++   ++  Q+ +  +  
Sbjct: 430 LKVETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAA--DLKRQLEEARNAL 487

Query: 636 AMIEGFGKM 644
           A+ +  G+ 
Sbjct: 488 AIAQRNGEF 496



 Score = 38.3 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/210 (9%), Positives = 66/210 (31%), Gaps = 14/210 (6%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++KY+ + +   R ++           +  +++    K +   K  + ++AL+     
Sbjct: 318 EEYRKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAATL 377

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +    +L   + S   E        +  ++            
Sbjct: 378 SNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPEELDEIDRRIMQLKIEREALK------ 431

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                 +       E  + D+ +   +  A ++  +       ++++Q+ +        +
Sbjct: 432 VETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAADLKRQLEEARNALAIAQ 491

Query: 614 TAILISI--------LHEVHIQIHQIESQE 635
                          + ++  Q+   ESQE
Sbjct: 492 RNGEFQKAGELAYGTIPQLEKQLADAESQE 521


>gi|258573523|ref|XP_002540943.1| SLA2 protein [Uncinocarpus reesii 1704]
 gi|237901209|gb|EEP75610.1| SLA2 protein [Uncinocarpus reesii 1704]
          Length = 1022

 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 79/229 (34%), Gaps = 32/229 (13%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------YWKKNARHRDQKGPSQRLMQS 469
           ++Q LR  Y Q  + RL +L Q+ +   + Y R       + K  +  +++        S
Sbjct: 336 QEQLLRDQYQQQTQGRLAELEQENLNARAQYERDQLMLQQYDKRVKDLEEQLNQLNSNYS 395

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
                K  +  +L+E              + +Y+ LA +        +L           
Sbjct: 396 LQNSSKDDQIRALQEQV---------NTWRSKYEALAKL------YSQLRQEHLDLLQTT 440

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT-TEANIVDVRQGYQQALALYKRF 588
           K         +L      E + + +R  R+    +    +      R  +++        
Sbjct: 441 KSL-------KLKAASAQEAIDRRERLEREMKTKNLELADMIRERDRALHERDRISGGNK 493

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
             L + K E+   I +     E  K + + ++L + + ++  +E  EA+
Sbjct: 494 EELEKLKRELRLAIERAENA-ERAKGSEISAMLSKYNREMADLE--EAL 539


>gi|222641591|gb|EEE69723.1| hypothetical protein OsJ_29398 [Oryza sativa Japonica Group]
          Length = 1233

 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L   L    +E+K    + + Q+   +     L+  ++ + D  + +   + +I+     
Sbjct: 722 LREKLSKLEMEKKILDEQSLDQKDELQRLKSSLESCEKAMEDCNIQNELEKDSILSELLT 781

Query: 578 YQQALA------LYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILISILHEVHIQIH 629
            Q+ +       L K    + ++ +  + ++ +   K     ++   L S   E   +I 
Sbjct: 782 LQKEVVYLSSSSLMKEKESIRKELDRTKTKLKETENKLKNSIQEKIKLESEKAEAQREIK 841

Query: 630 QIESQEAMIE 639
           +++SQ  ++E
Sbjct: 842 KLQSQRTLLE 851


>gi|170055670|ref|XP_001863685.1| GM130 [Culex quinquefasciatus]
 gi|167875560|gb|EDS38943.1| GM130 [Culex quinquefasciatus]
          Length = 929

 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 31/302 (10%), Positives = 90/302 (29%), Gaps = 30/302 (9%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            + I+       +++I +     D   ++          +    L   ++       D  
Sbjct: 363 QNLIKAQQIKDLQEIIKQIGAERDQSNQQYQNYVLHLNKE-VTNLADKIRELTEENNDLS 421

Query: 420 LRY-YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            R     + + +  +Q+ Q+   E     +  +++ +       +       L +   + 
Sbjct: 422 SREGDLVRHVGELERQMQQQLSKEKKYAAQQQEEDKQPEADGRQALEAEVKLLKEKVATM 481

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +    E  LL     +   L+ + +++A ++     LQ+    +     E          
Sbjct: 482 EVERAEYMLLKR--GYEDGLKARDEQIASLQLTVERLQQDKPDVARLMAEIDSGKVGASR 539

Query: 539 QRLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDV------------RQGYQQALALY 585
                      L+++ +  V+ +      TE    ++             +    ++   
Sbjct: 540 AVAQNMELKAQLEEMQKAFVQISNDKLELTEKLQTELHLGKEMKSTYGQLETELHSIREK 599

Query: 586 KRFRL-----LSRQKEEIEKQIAQVTAKGEAEKTAI--------LISILHEVHIQIHQIE 632
             ++      L+ +  E+ KQ+ Q   + +  +           L   L     Q+ Q++
Sbjct: 600 LHYKDEEMIRLAHENTELNKQLLQQNQEIDRLRYYESRASDGNVLQLELQRAQQQLEQMQ 659

Query: 633 SQ 634
             
Sbjct: 660 RS 661



 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 79/262 (30%), Gaps = 28/262 (10%)

Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQAIRDRLQQLFQKY 439
                 +           +   ++   L      ++ Q            + +  + +  
Sbjct: 175 NNQSTVEELRNEIDKLRVENSPKVTSELGPIQEQLQMQTQAVGVMVGEKAELMGTVSKLQ 234

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
                      +   R +  +   Q+L +      +   +    E  +            
Sbjct: 235 SLVKERANENDELQNRLKASRATVQKLEKEIESMKQSGSRFESLERTI------------ 282

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
               +L + + + N+ +KL+  L  D  E K  L       +  + F  + K+L++   D
Sbjct: 283 --GVQLNEFQEEANKFRKLYEDLQEDLGEHKQKLL------VRNQEFQTVQKELEQTRSD 334

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGEAEKTA--- 615
             L     E    D    +   +    +  L+  +Q +++++ I Q+ A+ +        
Sbjct: 335 LSLAKLRIEQLSSDDDLDFNAKIEALTQQNLIKAQQIKDLQEIIKQIGAERDQSNQQYQN 394

Query: 616 ---ILISILHEVHIQIHQIESQ 634
               L   +  +  +I ++  +
Sbjct: 395 YVLHLNKEVTNLADKIRELTEE 416


>gi|168022700|ref|XP_001763877.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684882|gb|EDQ71281.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 607

 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 51/141 (36%), Gaps = 11/141 (7%)

Query: 510 YDNNELQKLWSF--LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
           +   E   L          +++     E + +   E     L      ++ +  L +   
Sbjct: 375 FSPGEHADLLEKNSYLESALKKSMLENEALKREFEEDKNNLLESLERLELANEQLLAGGE 434

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            + +  ++    +   L K   LLS+++ E++ Q++        +     +  L E++ Q
Sbjct: 435 NSGMEQLQ---MELTRLQKHNTLLSQRERELQFQLST------KDMLQKEVQHLQELNEQ 485

Query: 628 IHQIESQEAMIEGFGKMSGRL 648
           + +  + +   E   KM  R+
Sbjct: 486 LLETRAGDGDSESGNKMLERI 506


>gi|149738046|ref|XP_001502069.1| PREDICTED: similar to Golgin subfamily A member 1 (Golgin-97)
           [Equus caballus]
          Length = 756

 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 71/220 (32%), Gaps = 16/220 (7%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R    + +  RL    ++         +      +H+D      +    +    +     
Sbjct: 63  RNEQIRKLEARLSDYAEQVRNLQKIKEKLEIALEKHQDSSMRKFQEQNETFQANRA---- 118

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            + E   L          ++  Q   + R+   +LQ++ S   + F  +         + 
Sbjct: 119 KMAEGLALALARKDQEWSEKMDQLEKEKRFLTAQLQEMKSQSLNLFQRRDEMDE---LEG 175

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             ++   ++   L ++    G      EA   ++    ++ +   +    LSR+ EE+++
Sbjct: 176 FQQQELSKVKHMLLKKEESLGKMEQELEARTRELSCTQEELMTSSRMSSDLSRKLEELQR 235

Query: 601 QIAQVTAKGE---------AEKTAILISILHEVHIQIHQI 631
           + + +  + +           K   L     E+   I Q+
Sbjct: 236 RCSTLEEQRDHVTASKTGAENKITALEQKEQELQAFIQQL 275


>gi|71993559|ref|NP_741023.2| Nuclear Pore complex Protein family member (npp-21) [Caenorhabditis
           elegans]
 gi|52839828|gb|AAU87819.1| Hypothetical protein R07G3.3b [Caenorhabditis elegans]
          Length = 1987

 Score = 40.6 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 80/247 (32%), Gaps = 14/247 (5%)

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
             +  + +  + + ++  +   +D+  R   +    D ++   ++     +   +  +  
Sbjct: 284 FKDQLEAQENVLVEVRKVLQEHQDEMERENLAH--ADAIKHRDEELAQTRAELVKVTEMM 341

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-AALLLTLINHPAILQEQYQELADIRYDN 512
               D K        S L          LR   +L   ++ H         +L ++  DN
Sbjct: 342 KSMSDVKLNVSEEELSELAPAAAETVRYLRGGQSLSSLVLEH----ARVRGKLTEVEEDN 397

Query: 513 NELQKLWSFLFSDFVEQKYFLPEE--IHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
             L+     L     + K  +  +  +   L ++      KQLD    +     +  +  
Sbjct: 398 VNLRNTLEELLETIDQNKPQMISQKMVTDELFDKN-NRFEKQLDLAESERRQLLSQRDTA 456

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEAEKTAILISILHEVHI 626
             D+     +     + +  +S++  E+    E+Q          +    L   + ++  
Sbjct: 457 QRDLAYVRAELEKYQRDYEFVSKRNAELLYAVERQSRMQDPNWSEQADEQLFQNIVQLQR 516

Query: 627 QIHQIES 633
           +  ++ES
Sbjct: 517 RNVELES 523


>gi|327271590|ref|XP_003220570.1| PREDICTED: liprin-alpha-4-like [Anolis carolinensis]
          Length = 1199

 Score = 40.6 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/278 (6%), Positives = 69/278 (24%), Gaps = 42/278 (15%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA-IRDRLQQLFQKYITEHS 444
                +       +        +      +     +    Q  +  R     +  + E  
Sbjct: 157 LFEHHKALDEKVRERLRASLERVATLEEQLSSAHQQISALQQGLSQR-----EAPVGEDE 211

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI---NHPAILQEQ 501
                 +   +   +   S+ +    L++ +  +    +E  + L          +   +
Sbjct: 212 KKPEGKELGQKKLWKDEASRTVELQELLEKQNFELAQAKERLVALAASVAELEEDLSTAR 271

Query: 502 YQELADIRYDNNELQKLWSFLFS---------------DFVEQKYFLPEEIHQRLCER-- 544
              +      +   + L   L                    +++     +++ +L     
Sbjct: 272 RDLIKSEEMSSKYQRDLREALAQKEDMEERITTLEKRYLAAQREATSIHDLNDKLENELA 331

Query: 545 ----------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL---- 590
                          L++L          +      + +V     Q +A   +       
Sbjct: 332 NKESLHRQCEEKARHLQELLELAEQKLQQTIRKAETLPEVEAELAQRIAALTKAEERHGS 391

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +  +  ++E Q+ +   +    +    ++   E + ++
Sbjct: 392 IEERLRQLETQLEEKNQELARARQREKMNE--EHNKRL 427


>gi|330800297|ref|XP_003288174.1| hypothetical protein DICPUDRAFT_97936 [Dictyostelium purpureum]
 gi|325081804|gb|EGC35307.1| hypothetical protein DICPUDRAFT_97936 [Dictyostelium purpureum]
          Length = 780

 Score = 40.6 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 55/409 (13%), Positives = 116/409 (28%), Gaps = 65/409 (15%)

Query: 7   FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH---DEKTPSF---HCNDSKG 60
            ++ L        + G+ V+                CPF     EK  +    + +   G
Sbjct: 202 ILQYLRHKSKEYRVAGEEVNLKD-------------CPFCVNVQEKLDNMWKLYIHSHTG 248

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            ++C  C  KG+        L  +F +    L            P    K      +  +
Sbjct: 249 LFFCHRCSTKGNW-----NHLRLAFGD----LKQNFR---QAFQPAPVNKAPPPPPIKSM 296

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E  ++                 L++    S  ++ F       +     E   +K   E
Sbjct: 297 LEHISE------------VPKDVLEKIETYSKQLDKFPKVLQKLTGTGPGERGIKKEVLE 344

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
             ++ A        +  SY+       +     +G++I +  +  +    V     P   
Sbjct: 345 YYLVGATNSKFKSTNWDSYECVT--FPWTAVDEQGKIIQYRCKLRAIESKVHQRLEPAG- 401

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG-VQNVVSSLG 299
                   + +                 N    I++ EG  D +++ Q   +  +    G
Sbjct: 402 ---SRWGFFGWH-------------TIPNDCKLIVITEGEYDAMAVYQETGLPTISLPNG 445

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
            A     +  L+    +I+L  D D  G   A    DL+              ++  +D 
Sbjct: 446 FASFPQVMIPLFDRFEKIILWMDDDLMGRAGAANFSDLLGSQKTHVIFTKQGQINGPKDA 505

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
           +  +       F+++I  + P+   +     E        E  +     
Sbjct: 506 NDALLMGK--DFKEIIASAKPIHKFITDYMQERPEIAKEFEFFKPIPET 552


>gi|307266512|ref|ZP_07548046.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918492|gb|EFN48732.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 770

 Score = 40.6 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 69/204 (33%), Gaps = 27/204 (13%)

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
            +K PSQ+  +S + + K S     +    L  +  +  +L   +     + + N   Q 
Sbjct: 2   KEKLPSQKKNKSFIEESKKSIAYLQKREEFLSRIFENEQMLIVVWALDGRVVWFNRYTQA 61

Query: 518 LWSFLFSDFVEQKYFL-------PEEIHQRLCERGFGELLKQLDRQVR------------ 558
           +      +  E+              I + L + G+  +  + +  +             
Sbjct: 62  VIGIAVEEQTERIDVSSIIPRDTISRIKENLDDIGYKGIHYKCENPMVLKDGRQIYIMWH 121

Query: 559 -------DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
                  +   +  +T  +I D++   ++          L+ +    +++++ +  +  A
Sbjct: 122 NSIIWDDEGNRYVVSTGIDITDLKNAERRLEEANNNLVALNEELMAQQEELSAMNEELMA 181

Query: 612 EKTAILISILHEVHIQIHQIESQE 635
            +   L   L E+  Q  +++  E
Sbjct: 182 -REEELRQNLIEIQRQQEELKRSE 204


>gi|301619362|ref|XP_002939062.1| PREDICTED: myosin-6 [Xenopus (Silurana) tropicalis]
          Length = 1937

 Score = 40.6 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 90/273 (32%), Gaps = 14/273 (5%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
              +    +D     + E       + +  ++         I+ +       + +   L +
Sbjct: 1565 FNQLKSEIDRKLAEKDEEMEQVKRNNQRLVDALQTQLEAEIRSRNEALRVKKKMEGDLNE 1624

Query: 435  LFQKYITEHSGYGRYWKK-NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA--ALLLTL 491
            +  +    +       K   A H   K    +L  +      L +  ++ E    LL   
Sbjct: 1625 MEIQLSQANRSASEAHKHLKAAHGSLKDTQMQLDDTMRANDDLKENTAIVERRNMLLQAE 1684

Query: 492  INHPAILQEQYQE---LADIRY--DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +     + EQ +    LA+      +  +Q L S   S   ++K    +    +L     
Sbjct: 1685 LEELRSILEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKTESD--LAQLQ-AEV 1741

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
             E +++       A            ++++    +  L +  + + +  +++++++ +  
Sbjct: 1742 EEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQQRLDEAE 1801

Query: 607  A---KGEAEKTAILISILHEVHIQIHQIESQEA 636
                KG  ++   L S + E+  ++   + + A
Sbjct: 1802 QIAMKGGKKQLQKLESRVRELDSELENEQKRNA 1834



 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 83/269 (30%), Gaps = 22/269 (8%)

Query: 386  WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
              ++  N      + + + E       +  KD   R   ++    +L+  +++ +     
Sbjct: 1442 LDKKQRNFDKVLAEWKQKFEESQTELESSQKDA--RSLSTELF--KLKNAYEESLEHLET 1497

Query: 446  YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ-- 503
            + R  K                  S+ + +  +K   +E   L T +       E  +  
Sbjct: 1498 FKRENKNLQEEISDLTEQLGEGGKSIHELEKIRKQLEQEKMELQTALEEAEASLEHEEGK 1557

Query: 504  ----ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
                +L   +  +   +KL      + +EQ     + +   L  +   E+  + +     
Sbjct: 1558 ILRAQLEFNQLKSEIDRKLAEK--DEEMEQVKRNNQRLVDALQTQLEAEIRSRNEALRVK 1615

Query: 560  AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE--------- 610
              +     E  I  + Q  + A   +K  +      ++ + Q+       +         
Sbjct: 1616 KKMEGDLNEMEIQ-LSQANRSASEAHKHLKAAHGSLKDTQMQLDDTMRANDDLKENTAIV 1674

Query: 611  AEKTAILISILHEVHIQIHQIESQEAMIE 639
              +  +L + L E+   + Q E    + E
Sbjct: 1675 ERRNMLLQAELEELRSILEQTERSRKLAE 1703



 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 70/225 (31%), Gaps = 27/225 (12%)

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGK 475
            D   R    +  + +L Q  Q+                + + + +   + LM        
Sbjct: 1378 DAIQRTEELEEAKKKLAQRLQEAEEAVEAVNAKCSSLEKTKHRLQNEIEDLMVDLERSNA 1437

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
             +     ++      L       Q+  +   ++     + + L + LF            
Sbjct: 1438 AAAALDKKQRNFDKVLA---EWKQKFEESQTELESSQKDARSLSTELFKL---------- 1484

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                   +  + E L+ L+   R+              + +G +    L K  + L ++K
Sbjct: 1485 -------KNAYEESLEHLETFKRENKNLQEEISDLTEQLGEGGKSIHELEKIRKQLEQEK 1537

Query: 596  EEIEKQIAQVTAKGEAEK-----TAILISILH-EVHIQIHQIESQ 634
             E++  + +  A  E E+       +  + L  E+  ++ + + +
Sbjct: 1538 MELQTALEEAEASLEHEEGKILRAQLEFNQLKSEIDRKLAEKDEE 1582


>gi|301156116|emb|CBW15587.1| peptide chain release factor RF-2 [Haemophilus parainfluenzae T3T1]
          Length = 347

 Score = 40.6 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 548 ELLKQLDRQVRDAGLWSATTEA-NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
           E L++++ ++    +W+   +A  +   R   +Q +   K    L +  E++E  +    
Sbjct: 14  ERLEEVNAELEQPDVWNEPEKAQALGKERVSLEQVVDTIKN---LEQGLEDVEGLLELAV 70

Query: 607 AKGEAEKTAILISILHEVHIQIHQIE 632
              + E     ++ L E+  Q+ ++E
Sbjct: 71  EAEDEETFNEAVAELDELEQQLAKLE 96


>gi|270158781|ref|ZP_06187438.1| ATP-dependent protease La [Legionella longbeachae D-4968]
 gi|289166419|ref|YP_003456557.1| DNA-binding ATP-dependent protease La [Legionella longbeachae
           NSW150]
 gi|269990806|gb|EEZ97060.1| ATP-dependent protease La [Legionella longbeachae D-4968]
 gi|288859592|emb|CBJ13562.1| DNA-binding ATP-dependent protease La [Legionella longbeachae
           NSW150]
          Length = 800

 Score = 40.6 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 44/141 (31%), Gaps = 5/141 (3%)

Query: 497 ILQEQYQELADIRYDNNELQKLWS---FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
             + + + +++    N +++ L      L    +     L E++            L  L
Sbjct: 121 YFKARIELVSEQYTKNKQIEALMRNTIELLRHLISLTPHLSEDLLTLALNTNDPRQLVYL 180

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                   L  A     +  V     +      R   +    ++I+ Q        + E+
Sbjct: 181 AAASFRLELKDAQELLELDKVEDKLIKLNMFLTREVEIIELGKKIQSQAQ--NELDKTER 238

Query: 614 TAILISILHEVHIQIHQIESQ 634
             +L   L ++  ++ + + Q
Sbjct: 239 YFMLREQLKQIKKELGEEDEQ 259


>gi|237739478|ref|ZP_04569959.1| replicative DNA helicase [Fusobacterium sp. 2_1_31]
 gi|229423086|gb|EEO38133.1| replicative DNA helicase [Fusobacterium sp. 2_1_31]
          Length = 447

 Score = 40.6 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 62/166 (37%), Gaps = 15/166 (9%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E AL+  +      L E    +    +   E  +++  + + F E +   P  + + + 
Sbjct: 15  AERALIGGIFFDVNSLDEIKYIIKSDDFYKKEHAEIYKAIENLFSESRGVDPILVVEEIK 74

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK------- 595
           +       + L  QV    +   T+  N+++  +  ++  A+ +R   +  +        
Sbjct: 75  KSDLKNEEEIL--QVLTEIIDENTSSYNLLEYAELIKEK-AMLRRLGQVGMEITKTAYTD 131

Query: 596 -EEIEKQIAQVTAKGEAEKTAILISILHEVHI----QIHQIESQEA 636
               E+ + +  AK       IL + + ++      ++ +I++  A
Sbjct: 132 VRTAEEIMDEAEAKVLNLSKNILKNSIIDMKTASLDEMKRIDNVTA 177


>gi|258510634|ref|YP_003184068.1| SMC domain-containing protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477360|gb|ACV57679.1| SMC domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 1365

 Score = 40.6 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 9/132 (6%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ-----LDRQVRDAGLWSATT 567
            EL  L + +  D  E    L E +  R           +     L ++ R A       
Sbjct: 231 EELASLAN-MLEDLDEHAAHLEETVQHRTHAERLHRAYDRYNRVVLFQRARAAHEALKAE 289

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA---EKTAILISILHEV 624
           +    +VR   ++   L +    L R+  E++    +  A+ EA    +   +   L  +
Sbjct: 290 DEAQDNVRGAEKEFDDLARGLGELEREMCEVKADADRTEAELEALEHSEAMGIQRELDGI 349

Query: 625 HIQIHQIESQEA 636
             Q+  +  +EA
Sbjct: 350 QRQVEFLSGEEA 361


>gi|211938461|ref|NP_001101264.2| myosin-7B [Rattus norvegicus]
 gi|165928918|gb|ABY74500.1| myosin heavy chain 7B [Rattus norvegicus]
          Length = 1941

 Score = 40.6 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 27/279 (9%), Positives = 88/279 (31%), Gaps = 13/279 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
              +  +  +   L   D        N        +A L+   +     ++ +K       
Sbjct: 1571 ELSQVKAEVDRKLAEKDEECTNLRRNHQRAVESLQASLDAETRARNEALRLKKKMEGDLN 1630

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR--- 483
             +  +L    ++ +   +       +    +  +   QRL      +G+  ++ +     
Sbjct: 1631 DLELQLGHATRQAMEAQAATRLLQAQLKEEQAGRDEEQRLAAELREQGQALERRAALLAS 1690

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E   L   +      +   ++  ++      L  L S       ++K    +    +L  
Sbjct: 1691 ELEELRAALEQGERSRRLAEQ--ELLEATERLNLLHSQNTGLLNQKKKLEVD--LAQLSG 1746

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   ++ + + +     +        ++++    +  L +  + L +   E++ ++ 
Sbjct: 1747 EVEEAAQERREAEEKAKKAITDAA-MMAEELKKEQDTSAHLERMKKTLEQTVRELQARLE 1805

Query: 604  QVTAK---GEAEKTAILISILHEVHIQI--HQIESQEAM 637
            +       G  ++   L + + E+  ++   Q +  EA+
Sbjct: 1806 EAEQAALRGGKKQVQKLEAKVRELEAELDAEQKKHAEAL 1844


>gi|114633009|ref|XP_521618.2| PREDICTED: eukaryotic translation initiation factor 3, subunit 10
           theta, 150/170kDa isoform 2 [Pan troglodytes]
          Length = 1352

 Score = 40.6 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|326332589|ref|ZP_08198857.1| hypothetical protein NBCG_04033 [Nocardioidaceae bacterium Broad-1]
 gi|325949590|gb|EGD41662.1| hypothetical protein NBCG_04033 [Nocardioidaceae bacterium Broad-1]
          Length = 419

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 11/96 (11%)

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ-------I 602
           L++L+   R     +A  E      R   ++  AL      + R+KE +EK+       I
Sbjct: 210 LQELELAARHLQALAAAKELERER-RAELKEQRAL---EAEIKREKERLEKERTHYLNSI 265

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            ++   G+ +    L S L  +  +I + + + A I
Sbjct: 266 QRLRDAGDEDAARALQSELDRIDAEIAEADYRAANI 301


>gi|323449548|gb|EGB05435.1| hypothetical protein AURANDRAFT_66407 [Aureococcus anophagefferens]
          Length = 927

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 37/331 (11%), Positives = 99/331 (29%), Gaps = 23/331 (6%)

Query: 319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES 378
               GD   +                    +  L  +  D     R         +  + 
Sbjct: 62  HMRTGDRRRVVKTCIPQSQRALLTKMEMMDSHRLPPKTIDELQKSRETRANDALAMKEQQ 121

Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCI--NHIKDQKLRYYYSQ-----AIRDR 431
           L +++    +   N      D  A     +        ++D+  R           +   
Sbjct: 122 LRMLNDQNVQLLRNLDSVEEDANAIQLEKIAAENDNRKLRDENFRLLSRARTADAQLSSM 181

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
             +  +K         +  +       ++  S +L   +            +   LL T 
Sbjct: 182 KAETVEKDKQLRVITDQNSELLRLLETEEAQSAKLNAENQNYSSELDLLKAKYGTLLATA 241

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF------LPEEIHQRLC--E 543
             H  +      E    +   +E++ L + +     + +          E +H++L   +
Sbjct: 242 KTHEEMANRAAHE---GQLRADEVRILRTEIEQLKQQNQELKLKAQVELEALHEQLRVRK 298

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
               +LL++L  Q R   L      +    +RQ + +++ L    ++ +R      +++ 
Sbjct: 299 EKQYQLLEKLQAQDRVKRLAEDQVSSMEDKLRQLHAKSVELDTHLQVETR-----NRRMK 353

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           + + +        L+  + EV  + ++ +++
Sbjct: 354 EESNRNLTADLNNLMEEIREVRSRSNRADAE 384


>gi|321400114|ref|NP_001189474.1| protein CASP isoform f [Homo sapiens]
          Length = 632

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 110/354 (31%), Gaps = 29/354 (8%)

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED-- 358
           A     +   WK      L  + D      A +  +          +      +  ED  
Sbjct: 2   AANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLR 61

Query: 359 ----PDSFIRCYGKTAFEKLIVESLPLVDMLWKRET---ENRSFNTPDERAELEIHLKNC 411
               P          A  K   E+      ++KR     E       ++  E E  LKN 
Sbjct: 62  KQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPEVTIKALKEKIREYEQTLKNQ 121

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
              I  +K +        ++ ++L +  ++  S       K    +     ++  +    
Sbjct: 122 AETIALEKEQKL-QNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLK 180

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            K          E  +++T +       E  Q          E + L   L S     + 
Sbjct: 181 TKYDEETTAKADEIEMIMTDLERANQRAEVAQR---------EAETLREQLSSANHSLQ- 230

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                +  ++ +    E   ++  +     +  A  E  I  + +  Q+  A   + R  
Sbjct: 231 -----LASQIQKAPDVEQAIEVLTRSS-LEVELAAKEREIAQLVEDVQRLQASLTKLREN 284

Query: 592 SR-QKEEIEKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           S  Q  ++E+Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 285 SASQISQLEQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 338


>gi|301610273|ref|XP_002934675.1| PREDICTED: liprin-alpha-3-like [Xenopus (Silurana) tropicalis]
          Length = 1194

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 75/276 (27%), Gaps = 31/276 (11%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
           + K + ++ +  +LP       +E         +   E+        N            
Sbjct: 63  HEKESLQRQLNIALPQEFAALTKELNLCREQLLEREEEISELKAERNNT----------- 111

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + + + L+ L  ++           +  +               SL +   +    +RE 
Sbjct: 112 RLLLEHLECLVSRHERSLRMTVVKRQAQSPAGVSSEVEVLKALKSLFEHHKALDEKVRER 171

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L   +   A+L+E      ++   + E   L   L            +          
Sbjct: 172 --LRVALERVAVLEE------ELEMSSQESIALREQLARRRSGIDDGGKDG--------- 214

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
                  +        L           + +   +   L +R  ++ RQ  E+E+++   
Sbjct: 215 -DTPSSTILNGSSHLELRGGRESELEEMLEKQRLELCQLKERLTMMCRQMAELEEELNTA 273

Query: 606 TAKG--EAEKTAILISILHEVHIQIHQIESQEAMIE 639
                   E  A L   L E   Q   +E +   +E
Sbjct: 274 QKDLIKSEEVNAKLQRDLKEALAQREDMEERITTLE 309


>gi|224050685|ref|XP_002196740.1| PREDICTED: similar to phospholipase C beta [Taeniopygia guttata]
          Length = 1192

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 65/227 (28%), Gaps = 18/227 (7%)

Query: 415  IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
             K  K R    Q     L +L      + +   R  +K          +      +    
Sbjct: 900  WKGSKQREELLQKYSGLLSELACPGGRKRTIRTRKTQKKRSVTPSDAGTSANPVKAAESI 959

Query: 475  KLSKKPSLREAA---LLLTLINHPAILQEQYQELAD------IRYDNN----ELQKLWSF 521
                   LRE     L+     H   ++ + ++ A       +         EL+ L   
Sbjct: 960  DCHWLVELRERLEMDLIHLGEEHHNRIRRKKEQHATEQVARILELAREKQAAELRVLRDT 1019

Query: 522  ----LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
                +       +    E +   L         ++L +++ ++ +         V  + G
Sbjct: 1020 SESNIKDIKKRMEAKRVERVQAMLRNTSDKAAQERLKKEINNSHIQEVVQTVKRVTEKAG 1079

Query: 578  YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
              Q     K+   L +  +E E Q+ Q       EK   L   + E+
Sbjct: 1080 RFQQKLEEKQAANL-QSIKERESQLQQQARVEYEEKLRALNVEVQEM 1125


>gi|241954840|ref|XP_002420141.1| ER to Golgi vesicle transport protein, putative; intracellular
            protein transport protein, putative [Candida dubliniensis
            CD36]
 gi|223643482|emb|CAX42361.1| ER to Golgi vesicle transport protein, putative [Candida dubliniensis
            CD36]
          Length = 2139

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 31/284 (10%), Positives = 83/284 (29%), Gaps = 13/284 (4%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   +        K   +S        + E E    +  +   +    ++      KD  
Sbjct: 998  EQESKKVELEGQLKNATDSTNEKIKGLEDELETIKKSNKEISMQNSELIQKLEKTEKDLD 1057

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             +      +R   +       +E S      K+             L+  SL K  L K+
Sbjct: 1058 TKDKEIDKLRAETKSNIDSLNSEISNLQAKLKETEDSHANTKNEHSLLSESLEK--LRKE 1115

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                + +L   L       ++   E+       ++LQ+  +   S +  +K  +   +  
Sbjct: 1116 YESTKTSLTAKLSAKIDEHKKVTDEIETKTKHISDLQQEHAKQKSQYESEKNDIKSNLEN 1175

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                R   E  ++L     +        +     +            + + L R  E+++
Sbjct: 1176 A--TRELSENKEKLSSLEIEKNKLQTKLKTQEEKIDDLETSVAISEDKSKSLKRDIEDLK 1233

Query: 600  KQIAQVTA---------KGEAEKTAILISILHEVHIQIHQIESQ 634
            ++  ++             + E+  ++ +   E+   + ++   
Sbjct: 1234 QEKGKLEKTLAENEKTISEKKEQLQVVNNKYKELEASLKKLSET 1277


>gi|255549916|ref|XP_002516009.1| Myosin-2 heavy chain, non muscle, putative [Ricinus communis]
 gi|223544914|gb|EEF46429.1| Myosin-2 heavy chain, non muscle, putative [Ricinus communis]
          Length = 691

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 87/263 (33%), Gaps = 22/263 (8%)

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
            N  ++   +   LK      + + LR  Y Q +    ++++       +      +K+ 
Sbjct: 103 MNENEQLKAVIEDLKRKSTDAEIESLREEYHQRVATLERKVYALTKERDTLRREQNRKSD 162

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ----------YQE 504
                K   + + Q      +LSKK + +E+ +           +E+            +
Sbjct: 163 AAALLKEKDEIISQVMAEGEELSKKQAAQESTIRKLRAQIREFEEEKKGLMTKLQVEENK 222

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ----------LD 554
           +  I+ D    +KL          +     E     L      E L +          L+
Sbjct: 223 VESIKKDKTATEKLLQETIEKHQTELSAQKEFYTNALTAAKEAETLAEARANNEARTELE 282

Query: 555 RQVRDAGLWSATTEANIVDVRQGY-QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            ++R+A    +     + ++RQ   ++      R  +L R  E+++K+      + E E 
Sbjct: 283 SRLREAEERESMLVQALEELRQTLSRKEQQAVFREDMLRRDIEDLQKRYQASERRCE-EL 341

Query: 614 TAILISILHEVHIQIHQIESQEA 636
              +      +  QI  ++   A
Sbjct: 342 VTQVPESTRPLLRQIEAMQETMA 364


>gi|153956446|ref|YP_001397211.1| hypothetical protein CKL_3863 [Clostridium kluyveri DSM 555]
 gi|219856752|ref|YP_002473874.1| hypothetical protein CKR_3409 [Clostridium kluyveri NBRC 12016]
 gi|146349304|gb|EDK35840.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219570476|dbj|BAH08460.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 310

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 18/136 (13%)

Query: 6   DFIKDLLIHIPISNLIG----QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            F  +        +L+     Q         +              +             
Sbjct: 6   HFTDEQKERANSVDLVDFLQRQGEKLLPSGRDKRLAS---------DH----SITVRGNR 52

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESV-QRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           +Y  +       +  +  L   SF E+V   L    GV         E +++    L   
Sbjct: 53  WYDHASEEGSYAIDLVKRLYNLSFPEAVSLLLGGEQGVEYRQHSKFSEPEQRKPFALPPA 112

Query: 121 IEVATDFFHHSLKNAR 136
                  F + +K   
Sbjct: 113 HTDMRRVFAYLIKQRC 128


>gi|41322923|ref|NP_958786.1| plectin isoform 1a [Homo sapiens]
 gi|40849944|gb|AAR95684.1| plectin 11 [Homo sapiens]
          Length = 4547

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 45/153 (29%), Gaps = 16/153 (10%)

Query: 497  ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            +  +  +        + ELQ+L +       ++     E    R+      +L  +++ +
Sbjct: 2191 LRLQLEETDHQKNLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAE 2250

Query: 557  VRDAGLWSATT-------------EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEK 600
             R   L                  +      R       A   R      L++Q+   EK
Sbjct: 2251 NRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEK 2310

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             + +     +        + L +   ++ Q ++
Sbjct: 2311 MLKEKMQAVQEATRLKAEAELLQQQKELAQEQA 2343



 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1678 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1737

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1738 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1775



 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 19/212 (8%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
               LQQ  Q+ +          ++  R   ++    R    + ++ K  +     E + L
Sbjct: 1390 AKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQA-EAAERSRL 1448

Query: 489  LTLINHPAILQEQYQELADIRY----DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                     ++    +L            ELQ L +       +++    E   +RL  +
Sbjct: 1449 RI----EEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEA--ERLRRQ 1502

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E  ++   +V  A    A  EA     R          +    L  Q EE E+++ Q
Sbjct: 1503 VQDESQRKRQAEVELASRVKAEAEAAREKQRA--------LQALEELRLQAEEAERRLRQ 1554

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +   +    L +       ++    +  A
Sbjct: 1555 AEVERARQVQVALETAQRSAEAELQSKRASFA 1586



 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 78/268 (29%), Gaps = 23/268 (8%)

Query: 392  NRSFNTPDERAELEIHLKNCINHIK------DQKLRYYYSQAIR-----DRLQQLFQKYI 440
                 + D         +     I+       Q +R    Q        +R  +  ++  
Sbjct: 1210 RYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALLEEIERHGEKVEECQ 1269

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                 Y    K               + S   K K+           +    ++  +   
Sbjct: 1270 RFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTHYSELTTL 1329

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              Q +   ++ +  L+++         +Q+    E + +          L +   Q +  
Sbjct: 1330 TSQYI---KFISETLRRMEEE-ERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQ 1385

Query: 561  GLWSATT--EANIVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEAEKT 614
                A    +    +V +  + A+   ++ R +  + +++    E +I     + EA + 
Sbjct: 1386 AEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQAEAAER 1445

Query: 615  AILI--SILHEVHIQIHQIESQEAMIEG 640
            + L     +  V +Q+   E Q    EG
Sbjct: 1446 SRLRIEEEIRVVRLQLEATERQRGGAEG 1473


>gi|20090030|ref|NP_616105.1| chromosome segregation protein [Methanosarcina acetivorans C2A]
 gi|49036451|sp|Q8TRL1|RAD50_METAC RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|19914999|gb|AAM04585.1| purine NTPase [Methanosarcina acetivorans C2A]
          Length = 1074

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 29/281 (10%), Positives = 81/281 (28%), Gaps = 35/281 (12%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL----QQLFQKYITEHSG 445
            +       ++       ++     I++  L+       +  L    +QL     T    
Sbjct: 619 YDIEIEKLQEKAKASGKLIETHRARIEEDALKLESLDKRKQELETSGRQLLSDIKTLQVQ 678

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
                K +          + L +         +  + +    L  + N+   L E   +L
Sbjct: 679 EAEARKAHIEGEKTLIEVKTLDRKLAENTAEIESLNGKIRTSLALIENYGERLGELNDKL 738

Query: 506 ----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR-------------LCERGFGE 548
                       +L+ L   L +   ++                        L       
Sbjct: 739 KALAEKENLSKEKLKALELALEAAQKKENEAKKAHSESEKLLGQAKKLQANLLSMENIKH 798

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSRQKEEIEKQ----- 601
            + +L+  +R+        +  I++  +  +Q     +  R   L +++ + E+      
Sbjct: 799 KISELEAAIRNLAEKVGFLDREILERSERIRQLGEKLEGNRLSELQQKRAQFEQAQAKIT 858

Query: 602 --IAQVTAKGEA-----EKTAILISILHEVHIQIHQIESQE 635
             I + T + ++           +  L E+  ++  +E+++
Sbjct: 859 ENIREKTEEKDSLLKEIGMLENSLKRLRELRKELKALENRQ 899


>gi|317485413|ref|ZP_07944292.1| DNA repair protein RecN [Bilophila wadsworthia 3_1_6]
 gi|316923372|gb|EFV44579.1| DNA repair protein RecN [Bilophila wadsworthia 3_1_6]
          Length = 519

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 30/258 (11%), Positives = 82/258 (31%), Gaps = 20/258 (7%)

Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438
            P  +         RS      R EL          I D        + +R  L     +
Sbjct: 56  RPGKERAQVEALFMRSGEELIVRRELIAETGRSRLFINDTLASQETIKELRTTLLVHTSQ 115

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
           +  +      +  K       +        + L + K + +           L +   +L
Sbjct: 116 HGQQKLLQPNFQAKLIDDWMNQPDLLAARNTLLKELKEAAERKEALRTRFRELADRRELL 175

Query: 499 QEQ---YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
           +      ++++    +  +L+ + +        ++++   ++  R  E G  E +  L+R
Sbjct: 176 EMHLTEIEKVSPAEGEEEQLEAMRAEWRGTEQLRRHYERAQMILRGEETGLLEQIGHLER 235

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV---TAKGEAE 612
            +            +  D+    + A++         +   E+E+++ +     A  + E
Sbjct: 236 ALELLA-------GDDEDMAAYLESAVSFR-------QTIAELERKLRRPPLPQADIDPE 281

Query: 613 KTAILISILHEVHIQIHQ 630
           +    +  L ++  ++H+
Sbjct: 282 QIEARLFELAQLKRKLHR 299


>gi|307544293|ref|YP_003896772.1| solute/DNA competence effector protein [Halomonas elongata DSM
           2581]
 gi|307216317|emb|CBV41587.1| putative solute/DNA competence effector protein [Halomonas elongata
           DSM 2581]
          Length = 377

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L ++   E     +R  R         E  +  +R+   Q  A+  R   L RQ++ 
Sbjct: 15  KAHLEDQDLIE-----ERSTRLMVALEGRAETLLEALREARVQREAMSSRLDELERQRQS 69

Query: 598 IEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQ 634
           +E + A++ A+      +   L   + E+  ++   E+ 
Sbjct: 70  LEARNAELAAEAREGGAERESLERRVAELERRLADAEAS 108


>gi|302387473|ref|YP_003823295.1| hypothetical protein Closa_3140 [Clostridium saccharolyticum WM1]
 gi|302198101|gb|ADL05672.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
          Length = 310

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 18/136 (13%)

Query: 6   DFIKDLLIHIPISNLIG----QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61
            F  +        +L+     Q         +              +             
Sbjct: 6   HFTDEQKERANSVDLVDFLQRQGEKLLPSGRDKRLAS---------DH----SITVRGNR 52

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESV-QRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
           +Y  +       +  +  L   SF E+V   L    GV         E +++    L   
Sbjct: 53  WYDHASEEGSYAIDLVKRLYNLSFPEAVSLLLGGEQGVEYRQHSKFSEPEQRKPFALPPA 112

Query: 121 IEVATDFFHHSLKNAR 136
                  F + +K   
Sbjct: 113 HTDMRRVFAYLIKQRC 128


>gi|297478319|ref|XP_002690008.1| PREDICTED: centrosomal protein 110kDa [Bos taurus]
 gi|296484321|gb|DAA26436.1| centrosomal protein 110kDa [Bos taurus]
          Length = 2338

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 87/283 (30%), Gaps = 30/283 (10%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +D    I        +   +++              +         E+   +      IK
Sbjct: 536 KDLQRVIDSLDSKDPKHCHMKAQKRGKEQQFDIMNKQYKQLESRLDEILSRIAKETEEIK 595

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D              L+Q   +     +   +   +      Q+       Q++  + + 
Sbjct: 596 D--------------LEQQLTEGQIAANEALKKDLEGVISGLQEYLGTVKGQAAQAQNEC 641

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            +    +EA     L+   A ++++  +L  +  D   ++K  + L S   EQ       
Sbjct: 642 RRLQDEKEA-----LLQSLAQVEQERDQLEIVALDAENMRKELAELESALAEQHEVNASL 696

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                          +L+ Q+R     ++  +  + ++     Q      +   L ++K+
Sbjct: 697 QQTH---GDLSAYEAELEAQLRMKDAEASQLKKELGEL-ARLSQLEQSTLQTE-LEKEKQ 751

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++  + +     E E+         E+  Q+ Q++    +++
Sbjct: 752 ALKNALGKAQLSEEKEQENS------ELRTQLKQLQDDNNLLK 788


>gi|296132598|ref|YP_003639845.1| phosphoesterase PHP domain protein [Thermincola sp. JR]
 gi|296031176|gb|ADG81944.1| phosphoesterase PHP domain protein [Thermincola potens JR]
          Length = 887

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 58/175 (33%), Gaps = 25/175 (14%)

Query: 474 GKLSKKPSLREAALLLTLINH-------PAILQEQYQELADIRYDNNELQKLWSF-LFSD 525
            K        E  +L  L  +         I+      L+++      +++L  + +   
Sbjct: 415 RKELDNLEEEERLILKLLRENHVNIEKTSDIICRVEARLSELPRLQETIKRLKQYRVADK 474

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD------VRQGYQ 579
           F E+K +  E+I     ++   + L+ L+    +  +     +A  ++      +    +
Sbjct: 475 FAEKKAYDKEKILFERVQQEIEQCLRNLEAVKSELEINPEIIQAADLEKLPNAQLLSEVK 534

Query: 580 QALALYKR-----FRLLSRQK----EEIEKQIAQVTAKGE--AEKTAILISILHE 623
             LA   +        L RQ     +E+E    +     +   EK   L+  L  
Sbjct: 535 TLLANLNKGIASTLAGLERQIVHSKQEVEGIKNRWKQLFDRQEEKYNELLRELQA 589


>gi|261331831|emb|CBH14825.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 660

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 79/253 (31%), Gaps = 23/253 (9%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
           P V        + +         EL    +     +K  + R        +RL       
Sbjct: 120 PDVRSDVYHGIKAKISALQFSNDELRAENEELKERVKMARERE------AERLGSQEAAA 173

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
             E  G  +  ++  R+ ++     +  +S L +   S    LR+               
Sbjct: 174 RNELEGLRKKLRETERNYERVVQEFQRERSQLTQAVESVTSQLRQEM------------S 221

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
            + +E+A +   N       + L + +  Q+    E+      +R     L+ L+  +  
Sbjct: 222 RREEEIARLESANATA---IAQLKTRWQAQEKAAREKWRIAEAKRIKENTLQSLEPDIVL 278

Query: 560 AGLWSATTEANIVDVRQGYQQALALYK--RFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
                   +A + +  +   +        +   L   +  +E++ +   A+ + E    L
Sbjct: 279 LLNRHKAEKARMREEFENELRQRDEVIAAKEATLEESRARLEREASATRAREQQEFRDRL 338

Query: 618 ISILHEVHIQIHQ 630
              +  V+ Q+ +
Sbjct: 339 KEEMDRVNRQLEE 351


>gi|221130996|ref|XP_002167357.1| PREDICTED: similar to nonmuscle myosin II [Hydra magnipapillata]
          Length = 1906

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 64/187 (34%), Gaps = 16/187 (8%)

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD--- 511
             +       ++L +              +   L+   +    ++ E  + +A        
Sbjct: 943  SNAKLSQDKKQLEERMDELSTKLSAEEDKSKGLIKLKVKQETLISELEERVAKSEKTAVD 1002

Query: 512  -NNELQKLWSFLFSDFVEQKYFL--PEEIHQRL--CERGFGELLKQLDRQVR---DAGLW 563
               E++KL   +     +         E+   L   +      +K+ D ++    +    
Sbjct: 1003 YQKEIRKLQQEISDLRNQLAEAQQRIAELEDDLARRDNELAAAIKRGDEEMSKRVNVEKA 1062

Query: 564  SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
                EA++ +V+  Y+Q  A  ++   + + K E+EK + ++  + E    A  +    E
Sbjct: 1063 KRDVEAHLEEVKDDYEQEKAAREK---VEKAKRELEKDLNELREELEVNTDATTVQ--KE 1117

Query: 624  VHIQIHQ 630
            +  +  +
Sbjct: 1118 LQRKREE 1124


>gi|195344754|ref|XP_002038944.1| GM17107 [Drosophila sechellia]
 gi|194134074|gb|EDW55590.1| GM17107 [Drosophila sechellia]
          Length = 4019

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 45/342 (13%), Positives = 104/342 (30%), Gaps = 30/342 (8%)

Query: 297  SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
                       + L+K    +               +A +L              +    
Sbjct: 737  PCNFHGLSEHSQELFKSMVTV-----NRHHFGPLYQRATELFDKLEDFKTIWLPWIALGC 791

Query: 357  EDPDSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             D D     +   A +      S         +  +       +    + I++    + I
Sbjct: 792  VDVDQLCGIHLNEAGDWDRNFRSCKHFSQQLAKLQQAE-----ESIDCIVINVLPLRSDI 846

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
              + +  +Y +++ + L+      ++    + +   +  +  +       + QS +   K
Sbjct: 847  --EYISRHYWESLANSLRTAILTDVSLIQEFLQSALQFLQ--NVPMDEGSISQSGMKYEK 902

Query: 476  LSKKPSLREAALLLTLINHP---AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
            +  +    E  L+             +E+   L+ I     +LQ L              
Sbjct: 903  IMSELPQIEKTLVAVRAKDSCLAGWCKERVTALSGILLQWEQLQPLLE------------ 950

Query: 533  LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                I QR  +    +   QL     +A  +    E+ I ++       L ++K  RL  
Sbjct: 951  NHAVILQRQVDMIKNQAETQLQNLKNEAEKFLLRWESTISELEANEHSTLDVFKERRLHW 1010

Query: 593  RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +Q +E + ++ +  +K   E  A ++S   E+  Q+ Q   Q
Sbjct: 1011 QQLQEKKTKLLEECSKFNMEFPAEMLSPFIEIEEQLEQQSKQ 1052


>gi|119901005|ref|XP_598421.3| PREDICTED: centrosomal protein 110kDa [Bos taurus]
          Length = 2338

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 87/283 (30%), Gaps = 30/283 (10%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +D    I        +   +++              +         E+   +      IK
Sbjct: 536 KDLQRVIDSLDSKDPKHCHMKAQKRGKEQQFDIMNKQYKQLESRLDEILSRIAKETEEIK 595

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D              L+Q   +     +   +   +      Q+       Q++  + + 
Sbjct: 596 D--------------LEQQLTEGQIAANEALKKDLEGVISGLQEYLGTVKGQAAQAQNEC 641

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            +    +EA     L+   A ++++  +L  +  D   ++K  + L S   EQ       
Sbjct: 642 RRLQDEKEA-----LLQSLAQVEQERDQLEIVALDAENMRKELAELESALAEQHEVNASL 696

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                          +L+ Q+R     ++  +  + ++     Q      +   L ++K+
Sbjct: 697 QQTH---GDLSAYEAELEAQLRMKDAEASQLKKELGEL-ARLSQLEQSTLQTE-LEKEKQ 751

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++  + +     E E+         E+  Q+ Q++    +++
Sbjct: 752 ALKNALGKAQLSEEKEQENS------ELRTQLKQLQDDNNLLK 788


>gi|114842389|ref|NP_065935.2| myosin-7B [Homo sapiens]
 gi|123238144|emb|CAI19310.2| myosin, heavy chain 7B, cardiac muscle, beta [Homo sapiens]
 gi|123238647|emb|CAI43047.2| myosin, heavy chain 7B, cardiac muscle, beta [Homo sapiens]
          Length = 1983

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 86/279 (30%), Gaps = 13/279 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
              +  +  +   L   D        N        +A L+   +     ++ +K       
Sbjct: 1613 ELSQVKAEVDRKLAEKDEECANLRRNHQRAVESLQASLDAETRARNEALRLKKKMEGDLN 1672

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS---LR 483
             +  +L    ++     +       +    +  +   QRL      + +  ++ +     
Sbjct: 1673 DLELQLGHATRQATEAQAATRLMQAQLKEEQAGRDEEQRLAAELHEQAQALERRASLLAA 1732

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E   L   +      +   ++  ++      L  L S       ++K    +    +L  
Sbjct: 1733 ELEELRAALEQGERSRRLAEQ--ELLEATERLNLLHSQNTGLLNQKKKLEAD--LAQLSG 1788

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   ++ + + +     +        ++++    +  L +  + L +   E++ ++ 
Sbjct: 1789 EVEEAAQERREAEEKAKKAITDAA-MMAEELKKEQDTSAHLERMKKTLEQTVRELQARLE 1847

Query: 604  QVTAK---GEAEKTAILISILHEVHIQI--HQIESQEAM 637
            +       G  ++   L + + E+  ++   Q +  EA+
Sbjct: 1848 EAEQAALRGGKKQVQKLEAKVRELEAELDAEQKKHAEAL 1886


>gi|41322910|ref|NP_958783.1| plectin isoform 1d [Homo sapiens]
 gi|40849938|gb|AAR95681.1| plectin 7 [Homo sapiens]
          Length = 4515

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 45/153 (29%), Gaps = 16/153 (10%)

Query: 497  ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            +  +  +        + ELQ+L +       ++     E    R+      +L  +++ +
Sbjct: 2159 LRLQLEETDHQKNLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAE 2218

Query: 557  VRDAGLWSATT-------------EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEK 600
             R   L                  +      R       A   R      L++Q+   EK
Sbjct: 2219 NRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEK 2278

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             + +     +        + L +   ++ Q ++
Sbjct: 2279 MLKEKMQAVQEATRLKAEAELLQQQKELAQEQA 2311



 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1646 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1705

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1706 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1743



 Score = 37.9 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 19/212 (8%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
               LQQ  Q+ +          ++  R   ++    R    + ++ K  +     E + L
Sbjct: 1358 AKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQA-EAAERSRL 1416

Query: 489  LTLINHPAILQEQYQELADIRY----DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                     ++    +L            ELQ L +       +++    E   +RL  +
Sbjct: 1417 RI----EEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEA--ERLRRQ 1470

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E  ++   +V  A    A  EA     R          +    L  Q EE E+++ Q
Sbjct: 1471 VQDESQRKRQAEVELASRVKAEAEAAREKQRA--------LQALEELRLQAEEAERRLRQ 1522

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +   +    L +       ++    +  A
Sbjct: 1523 AEVERARQVQVALETAQRSAEAELQSKRASFA 1554



 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 78/268 (29%), Gaps = 23/268 (8%)

Query: 392  NRSFNTPDERAELEIHLKNCINHIK------DQKLRYYYSQAIR-----DRLQQLFQKYI 440
                 + D         +     I+       Q +R    Q        +R  +  ++  
Sbjct: 1178 RYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALLEEIERHGEKVEECQ 1237

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                 Y    K               + S   K K+           +    ++  +   
Sbjct: 1238 RFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTHYSELTTL 1297

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              Q +   ++ +  L+++         +Q+    E + +          L +   Q +  
Sbjct: 1298 TSQYI---KFISETLRRMEEE-ERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQ 1353

Query: 561  GLWSATT--EANIVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEAEKT 614
                A    +    +V +  + A+   ++ R +  + +++    E +I     + EA + 
Sbjct: 1354 AEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQAEAAER 1413

Query: 615  AILI--SILHEVHIQIHQIESQEAMIEG 640
            + L     +  V +Q+   E Q    EG
Sbjct: 1414 SRLRIEEEIRVVRLQLEATERQRGGAEG 1441


>gi|57640952|ref|YP_183430.1| chromosome segregation ATPase [Thermococcus kodakarensis KOD1]
 gi|57159276|dbj|BAD85206.1| chromosome segregation ATPase [Thermococcus kodakarensis KOD1]
          Length = 1189

 Score = 40.6 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 39/98 (39%), Gaps = 2/98 (2%)

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              E+ K+++          A   A  V+V+    +   L  +   LS+  + I+K++  
Sbjct: 667 NVDEIRKRVEALEGRKEALEAQVNALKVEVKGLENELFELRMKKSELSKDVQVIQKELDS 726

Query: 605 --VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
                +   E+      ++ E+  +I + + + A + G
Sbjct: 727 YLAEDRSLKEEIEENERLISELEKRIEESKGEMAKLRG 764



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 55/138 (39%), Gaps = 2/138 (1%)

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
            + LA +     E++     L  +  +   +L  ++ ++L +     LL ++ R  +   
Sbjct: 188 EENLARVDLLIREVKAQLDKLEKERNDALRYL--DLKEKLEKARVTLLLAEIKRLEKFIE 245

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
              +  E     ++    +   + K      ++  EIE+Q+ + +  G  E T  +  + 
Sbjct: 246 EGGSREEEIEGQIKSLEDRLKEIAKEIVAKEKELAEIERQLEEKSGDGILEITRKISEVK 305

Query: 622 HEVHIQIHQIESQEAMIE 639
            ++ +    IE+ +  IE
Sbjct: 306 SKIEVAKRNIENAQKEIE 323



 Score = 37.9 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 3/124 (2%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
              +  +      +  ++       +   E L ++D  +R+        E    D  +  
Sbjct: 160 RRLIIDEISGIAEYDAKKEKALKELKQTEENLARVDLLIREVKAQLDKLEKERNDALRYL 219

Query: 579 QQALALYK-RFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQE 635
                L K R  LL  + + +EK I +  ++ E  +     L   L E+  +I   E + 
Sbjct: 220 DLKEKLEKARVTLLLAEIKRLEKFIEEGGSREEEIEGQIKSLEDRLKEIAKEIVAKEKEL 279

Query: 636 AMIE 639
           A IE
Sbjct: 280 AEIE 283


>gi|332858181|ref|XP_001160839.2| PREDICTED: LOW QUALITY PROTEIN: myosin-7B isoform 5 [Pan troglodytes]
          Length = 1983

 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 86/279 (30%), Gaps = 13/279 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
              +  +  +   L   D        N        +A L+   +     ++ +K       
Sbjct: 1613 ELSQVKAEVDRKLAEKDEECANLRRNHQRAVESLQASLDAETRARNEALRLKKKMEGDLN 1672

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS---LR 483
             +  +L    ++     +       +    +  +   QRL      + +  ++ +     
Sbjct: 1673 DLELQLGHATRQATEAQAATRLMQAQLKEEQAGRDEEQRLAAELHEQAQALERRASLLAA 1732

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E   L   +      +   ++  ++      L  L S       ++K    +    +L  
Sbjct: 1733 ELEELRAALEQGERSRRLAEQ--ELLEATERLNLLHSQNTGLLNQKKKLEAD--LAQLSG 1788

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   ++ + + +     +        ++++    +  L +  + L +   E++ ++ 
Sbjct: 1789 EVEEAAQERREAEEKAKKAITDAA-MMAEELKKEQDTSAHLERMKKTLEQTVRELQARLE 1847

Query: 604  QVTAK---GEAEKTAILISILHEVHIQI--HQIESQEAM 637
            +       G  ++   L + + E+  ++   Q +  EA+
Sbjct: 1848 EAEQAALRGGKKQVQKLEAKVRELEAELDAEQKKHAEAL 1886


>gi|328861762|gb|EGG10864.1| hypothetical protein MELLADRAFT_92211 [Melampsora larici-populina
           98AG31]
          Length = 1223

 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/213 (8%), Positives = 62/213 (29%), Gaps = 25/213 (11%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + +  R     Q+            ++           +  ++    +    +   L +
Sbjct: 94  IEEMAHRAAAEQQRIEEMAQRAAAEQQRIEEMAQAACLEKNRLEEMRQRAAEEEAFRLEQ 153

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             L+              ++   +   +  LQ+L   + +   + +            ER
Sbjct: 154 QQLI------------DDEKKRMLYEADQRLQQLREQVAAVEEKHRAE-----LAHWEER 196

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LLSRQKEEIEKQIA 603
                L +++ + R      A     +   R    + +A  +R R     Q   +++++ 
Sbjct: 197 ERRATLLEIEAEARAKARDEAEEAKALERNRALELERVAGIERARNDAIEQYRRVQEEVR 256

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           +       ++   +     E+  ++ +   + A
Sbjct: 257 RT-----QDEARRVQEE--ELRKELDEARKKFA 282


>gi|327282618|ref|XP_003226039.1| PREDICTED: citron Rho-interacting kinase-like [Anolis carolinensis]
          Length = 2068

 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 89/294 (30%), Gaps = 30/294 (10%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKL 420
             +   +   EKL         M  K        ++ + + +    ++   N +K D + 
Sbjct: 663 QAKERAEKELEKLQNREDSTEGMKKKLLEAEERRHSLENQVKRLETVERRENRLKEDIQT 722

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q + D++ +L +K+               +        +RL        K     
Sbjct: 723 KSQQIQQMADKILELEEKHREAQLAAQHLELHLKQKEQMY--EERLKVLDNQMKKDLADK 780

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  L           +   ++ A I   +++++ L   +       K      +  +
Sbjct: 781 DALENILRKHEEEAREKCKVLTEQKAMINAMDSKIRSLEQRIVELSEANKIAANSSLFTQ 840

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALALYKRFR 589
              +   E++ +L +Q       +   EA    + +  +           + L L  R R
Sbjct: 841 RNMKAQEEMISELRQQKFYLETQAGKLEAQNNKLEEQLEKITHQDHTDKTRLLELETRLR 900

Query: 590 L-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
                       L RQ  E++  + +  +     + + L +    +  Q+ + +
Sbjct: 901 EVSLEHEEQKLELKRQLTELQLTLQERES-----QISGLQATRAALESQLREAK 949



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 78/238 (32%), Gaps = 26/238 (10%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           +  L +  +    +   +    +    HR        L Q  +       + SL E  L 
Sbjct: 447 KKLLLKSRELQGAQDKCHQMEQEMTRLHRRVSEVEAVLSQKEVELKASETQRSLLEQDLA 506

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-- 546
             +    ++ +   Q   ++  ++++  +L   +     + +    +E   ++ E     
Sbjct: 507 TYITECSSLKRSLEQARMEVSQEDDKALQLLHDIREQSRKLQEIKEQEYQAQVEEMRLMM 566

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ------------ 594
            +L + L    R + L+ +    + +   +  ++A   + R + +  Q            
Sbjct: 567 NQLEEDLISARRRSDLYESELRESRLAAEEFKRKATECHNRLQKVKDQGKTEVGELYSKL 626

Query: 595 ----------KEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEAMIEG 640
                      +E+++++ +         E    +         ++ +++++E   EG
Sbjct: 627 ERINAEQQVKIQELQEKLTKAMKASSEATELLQNIRQAKERAEKELEKLQNREDSTEG 684


>gi|320582443|gb|EFW96660.1| putative nuclear cohesin complex SMC ATPase [Pichia angusta DL-1]
          Length = 1518

 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 70/221 (31%), Gaps = 22/221 (9%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            ++++   +           +           + KK +    +   S    +     G L 
Sbjct: 1006 EQVKKQIADKDARVTNASEELANKRRELDAMFTKKESYLSAKSKLSNEKSRYDQELGSLE 1065

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    + ++ L+         E   E  +    + ELQ+L      + +        ++
Sbjct: 1066 GRIESLQTSIKLSEQQISEYQNELESEFKESNLSDTELQQLKE--LEENISIAEQEYTQV 1123

Query: 538  HQRLCERGFGE--LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             ++L E       L+ +L+  +       +   +   +                    + 
Sbjct: 1124 SEQLNELELRASSLISELNGSLYPRLRQLSLRTSKSQENDDI----------------KV 1167

Query: 596  EEIEKQIAQVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
            +E+E ++ ++    E  +++   L+S   E+  Q+  +E Q
Sbjct: 1168 KELESKLQRLEETKEKLESSNSELLSKSKELKKQLKSLEDQ 1208


>gi|311246307|ref|XP_001925689.2| PREDICTED: centriolin, partial [Sus scrofa]
          Length = 1863

 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 30/269 (11%), Positives = 80/269 (29%), Gaps = 33/269 (12%)

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +         KR  E +      +  +LE  L   ++ I  +       + +  +L + 
Sbjct: 83  KDPKHCHMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEE---IKDLEQQLTEG 139

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
                              +        Q     +  +    +K          TL+   
Sbjct: 140 QIAANEALKKDLEGVISGLQEYLGTVKGQATQAQNECRRLQDEKE---------TLLQRL 190

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             ++++  +L  +  D   ++K  + L S   EQ                  +    L  
Sbjct: 191 TEVEQERDQLEIVALDAENMRKDLAELESALQEQHEVNAS----------LQQTQGDLSA 240

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-----LLSRQKEEIEKQIAQVTAKGE 610
              +        +A    +R+  ++   L +  +      L ++K+ ++  + +     E
Sbjct: 241 YEAELEAQLKIRDAEAHQLREELEKITRLSQLEQSALQTELEKEKQALKNALGKAQLSEE 300

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
            E+         E+  Q+ Q+++   +++
Sbjct: 301 KEQENS------ELRTQLKQLQNDNNLLK 323


>gi|301754613|ref|XP_002913132.1| PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform
           2 [Ailuropoda melanoleuca]
          Length = 1392

 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 47/393 (11%), Positives = 120/393 (30%), Gaps = 32/393 (8%)

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
            AL    + + K+     S      +   DV++L ++ ++  ++S   A+       L  
Sbjct: 543 KALQGATEKLSKENESLKSKLDHANKENSDVIALWKSKLETAIASHQQAM-----EELKV 597

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFE 372
              + V     +   L+   + I L   H I   +          D +         A  
Sbjct: 598 SFSKGVGTETAEFAELKTQIEKIRLDYQHEIENLQNKQ-------DSERSAHAKELEALR 650

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELE---IHLKNCINHIKD-------QKLRY 422
             ++  +   +   +               E+E     L+     +KD          + 
Sbjct: 651 GKLMAVITEKESSLEALKAKLDKAEDQHLVEMEDTLNKLQEAEIKVKDLEVLQAKCSEQT 710

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                   +L+   +K + +     +   +     ++        +  +   ++ K    
Sbjct: 711 KVIDNFTSQLKATEEKLL-DLDALRKASSEGKSEIEKLRQQLEAAEKQIKNLEIEKNTES 769

Query: 483 REAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            +A+ +   +    + L    + L+++      L+K    L   F +             
Sbjct: 770 GKASSITRELQGKELTLNNLQENLSEVSQVKEALEKELQILKDKFADASEEAVSV----- 824

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +R   E + +L ++       S   E    ++     +     +R   L + KE++E  
Sbjct: 825 -QRSMQETVNKLHQKEEQFNALSTELEKLRENLTDMEAKCRERDEREEQLIKAKEKLEND 883

Query: 602 IAQV--TAKGEAEKTAILISILHEVHIQIHQIE 632
           IA++   +   + +   +   L      I +++
Sbjct: 884 IAEIMKMSGDNSSQLTKMNDELRLKERNIEELQ 916


>gi|297687479|ref|XP_002821240.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           A-like isoform 4 [Pongo abelii]
          Length = 1348

 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 483 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 540

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 541 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 582


>gi|225847994|ref|YP_002728157.1| peptide chain release factor 2 [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644274|gb|ACN99324.1| peptide chain release factor 2 [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 370

 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/114 (11%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 522 LFSDFVEQKYFLPEE---IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           +  +   ++  + E+   +   L      E +K LD Q+ D   W+   +A  +  ++ Y
Sbjct: 2   ILEEIKTKQEEIIEKWNNLKDILKPEKLQEEIKVLDSQMADPNFWNDPKKAQEISSKRNY 61

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
                  +    + ++ ++++  I  +  + +      +   ++ +  ++ ++E
Sbjct: 62  LGE--KLEEILKIDKKVKDLQDYIQLLEMEKDESLYTEVEKEINHLEKELERLE 113


>gi|224052940|ref|XP_002187874.1| PREDICTED: similar to EIF6 protein [Taeniopygia guttata]
          Length = 1480

 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 2/107 (1%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    E+I  +L        L +    ++   L     E + + V    + +   ++R  
Sbjct: 618 QSMPSEQIRNQLT--AMSSALAKALAVIKPPHLMQEKEEQHQLAVTAFLKNSRKEHQRIL 675

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +  EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 676 ARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 722



 Score = 37.2 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 39/109 (35%), Gaps = 9/109 (8%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI--- 598
            +    +L      +               ++ R+   ++L + +    L +++ E+   
Sbjct: 651 EKEEQHQLAVTAFLKNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKV 710

Query: 599 ----EKQIAQVTAKGEAEKTAILISILHE--VHIQIHQIESQEAMIEGF 641
               E+++ Q   + E E+       + +  V  ++ QI+  E   + F
Sbjct: 711 RKAEEERLRQEAKEREKERILQEHEQIKKKTVRERLEQIKKTELGAKAF 759


>gi|195977758|ref|YP_002123002.1| DNA repair protein RecN [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974463|gb|ACG61989.1| DNA repair protein RecN [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 566

 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 86/247 (34%), Gaps = 33/247 (13%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             +   + D+L+Q +Q+    +    R   +  ++  +      L+   + +   +    
Sbjct: 160 DSFGDEVFDQLKQSYQQIFDRYKALRRQALEKQKNEKEHQARLDLLAFQIGEIDAADLVR 219

Query: 482 LREAALL----LTLINHPAILQEQYQE---LADIRYDN--------------NELQKLWS 520
             E  LL      L+NH  I          L +  + +               +L   + 
Sbjct: 220 G-EDDLLNQERQRLLNHKKIADTLTSAYLSLDNEDFSSLSQVRSSMNELLSIEDLAPEYQ 278

Query: 521 FLFSDFVEQKYFLPE---EIHQRLCERGFGE-LLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            + +   E  Y L E   ++   + +  F    L+ ++ ++      +      + DV  
Sbjct: 279 LMSAGVSEAYYILEEVTKQLSDTIDQLDFDAGRLQDIELRLDSINSLTRKYGGGVNDVLD 338

Query: 577 GYQQALALYKRF-------RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            Y      Y+           L R+ + +EKQ+    ++   ++ A+ + +  ++  ++ 
Sbjct: 339 YYANITKEYQLLSGGDRSSDELERELKALEKQLVLTASQLSDQRHALALELEADIKAELR 398

Query: 630 QIESQEA 636
           ++  ++A
Sbjct: 399 ELYMEKA 405


>gi|194207580|ref|XP_001498751.2| PREDICTED: similar to WD repeat-containing protein 65 [Equus
            caballus]
          Length = 1146

 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 24/266 (9%), Positives = 83/266 (31%), Gaps = 23/266 (8%)

Query: 357  EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            +D    +         +     L  ++    ++         + + + +   +     ++
Sbjct: 755  KDKQDVLHRERVDDLLEKQSRELQDLECCNNQKLLLEYEKYQELQLKSQRMQEEYEKQLR 814

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            D            + L + ++  + E +      +++ R + ++    +         ++
Sbjct: 815  DN---DETRSQALEELTEFYEAKLQEKTTLLEEAQEDVRQQLREFEETKKQIEEDEDREI 871

Query: 477  SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                +  E  L           +++ +    ++ +   ++K +S L  +  E +    E 
Sbjct: 872  QDIKTKYEKKL-----------RDEKESNLRLKGETGIMRKKFSSLQKEIEE-RTNDIES 919

Query: 537  IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLS 592
            +     +     ++K L++ +          +  I D  +         +       +L 
Sbjct: 920  LKG--EQVKLQGVIKSLEKDILSLKREIQERDETIQDKEKRIYDLKKKNQELEKFKFVLD 977

Query: 593  RQKEEIEKQI--AQVTAKGEAEKTAI 616
             + +E++KQI   +   K   E+   
Sbjct: 978  YKIKELKKQIEPRENEIKVMKEQIQE 1003


>gi|145614809|ref|XP_366361.2| hypothetical protein MGG_10579 [Magnaporthe oryzae 70-15]
 gi|145021744|gb|EDK05821.1| hypothetical protein MGG_10579 [Magnaporthe oryzae 70-15]
          Length = 1353

 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/189 (10%), Positives = 60/189 (31%), Gaps = 10/189 (5%)

Query: 451  KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH--PAILQEQYQELADI 508
            +K      +       ++S L   +   +   +E + L  ++    P +   + +     
Sbjct: 830  QKRHEELQKASEETAGLKSELGASQQLAQSRFKEISELKEILQRAQPELKNLRAEAAKIP 889

Query: 509  RYDNNELQKLWSFL-FSDFVEQKYFLPEEIHQRL--CERGFGELLKQLDRQVRDAGLWSA 565
                    K    +      +        + Q +   +     L  +L  + +       
Sbjct: 890  TLKEQIAAKASDMIALETREKNIKSELSRMKQDVAARDAELKTLRDKLAAENKQRLQLEN 949

Query: 566  TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
                   D+R+   + + L  +    +R+  +I+ ++A+V       +   L + L ++ 
Sbjct: 950  DKRTAGRDLRRSEAEKIELSAKEEKATRELHKIQDEMAKVQP-----RIKELEAELQKLK 1004

Query: 626  IQIHQIESQ 634
             +   ++ +
Sbjct: 1005 KERDDVKEE 1013


>gi|145550906|ref|XP_001461131.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428963|emb|CAK93755.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2017

 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 78/202 (38%), Gaps = 19/202 (9%)

Query: 438  KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA- 496
            +   ++    RY+ K  + ++     + +  + + +          E  +L  +++    
Sbjct: 1203 EINKKNRQLNRYYLKGFKPKELDADGKEIPDAEITEDPADFDRKAHEIEVLNKILDCAGV 1262

Query: 497  ILQEQYQELADIRYDNN------ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
            I+   + ++++            E +KL  ++    +EQ  F+    + ++ E  +   +
Sbjct: 1263 IINANFFDVSEESVSTPIVDLLVEAKKLPEYVILLKIEQDNFIKRNFNSKVIEDEYQMKM 1322

Query: 551  KQLDR-------QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            ++L +       + R+  +     E   ++  QG ++     K   ++  Q++++++Q  
Sbjct: 1323 EELRQKRYQERVEARNKAIEEGAEELPSLEAPQGEEEDPEAPKLDDMIKEQEDKLKQQ-- 1380

Query: 604  QVTAKGEAEKTAILISILHEVH 625
                + ++ K   L     E+ 
Sbjct: 1381 ---HEADSAKIEELQRQFEELK 1399


>gi|120953219|ref|NP_080414.2| hypothetical protein LOC67412 precursor [Mus musculus]
 gi|122063307|sp|Q6NZL0|CF174_MOUSE RecName: Full=Uncharacterized protein C6orf174 homolog; Flags:
           Precursor
 gi|148672884|gb|EDL04831.1| RIKEN cDNA 6330407J23, isoform CRA_a [Mus musculus]
          Length = 945

 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 22/197 (11%)

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPA 496
             + +   +   +      +       + S L KG+    PS REA L   L  +     
Sbjct: 538 RKKMAKIDKEKDRFEHELQKYRSFYGDLDSPLPKGEAGGPPSTREAELKLRLRLVEEEAN 597

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           IL  +  EL        E + L + L     E        +      R   E L +L + 
Sbjct: 598 ILGRKIVELEV------ENRGLKAELDDLRGEDFNGSSNPLM-----REQSESLSELRQH 646

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           ++     +     N+ D+ +  ++  A   +++         +      +   +  KT  
Sbjct: 647 LQLVEDETELLRRNVADLEEQNKRITAELNKYKY--------KSSGHDSSRHHDNAKTEA 698

Query: 617 LISILHEVHIQIHQIES 633
           L   L    +QI+++  
Sbjct: 699 LQEELKAARLQINELSG 715


>gi|56789962|gb|AAW30000.1| structure protein NSP5a3b [Homo sapiens]
          Length = 987

 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 89/280 (31%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   +    E+    
Sbjct: 415 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKMENGSLK 474

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   +    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 475 SHLQGEKQKATEASAVEQTAES--CEVQEMLKVARAEKDLLE--LSCNELRQELLKANGE 530

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 531 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 590

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + E    
Sbjct: 591 VEQHRAVKLHNNQLISELESSVIK----------LEEQKSDLERQLKTLTKQMKEETEEW 640

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 641 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 680


>gi|153217512|gb|AAI51243.1| Myosin, heavy chain 7B, cardiac muscle, beta [Homo sapiens]
 gi|208965266|dbj|BAG72647.1| myosin, heavy chain 7B, cardiac muscle, beta [synthetic construct]
          Length = 1983

 Score = 40.6 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 86/279 (30%), Gaps = 13/279 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
              +  +  +   L   D        N        +A L+   +     ++ +K       
Sbjct: 1613 ELSQVKAEVDRKLAEKDEECANLRRNHQRAVESLQASLDAETRARNEALRLKKKMEGDLN 1672

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS---LR 483
             +  +L    ++     +       +    +  +   QRL      + +  ++ +     
Sbjct: 1673 DLELQLGHATRQATEAQAATRLMQAQLKEEQAGRDEEQRLAAELHEQAQALERRASLLAA 1732

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E   L   +      +   ++  ++      L  L S       ++K    +    +L  
Sbjct: 1733 ELEELRAALEQGERSRRLAEQ--ELLEATERLNLLHSQNTGLLNQKKKLEAD--LAQLSG 1788

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   ++ + + +     +        ++++    +  L +  + L +   E++ ++ 
Sbjct: 1789 EVEEAAQERREAEEKAKKAITDAA-MMAEELKKEQDTSAHLERMKKTLEQTVRELQARLE 1847

Query: 604  QVTAK---GEAEKTAILISILHEVHIQI--HQIESQEAM 637
            +       G  ++   L + + E+  ++   Q +  EA+
Sbjct: 1848 EAEQAALRGGKKQVQKLEAKVRELEAELDAEQKKHAEAL 1886


>gi|322505550|emb|CAM43045.2| membrane associated protein-like protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1471

 Score = 40.3 bits (92), Expect = 0.94,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 72/250 (28%), Gaps = 6/250 (2%)

Query: 395  FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
                +  A           H ++++L     +  R +     ++         R  +   
Sbjct: 982  HAEEERLARAAEEQARLERHAEEERLARAAEEQARLQRHDEEERLARAAEEQARLERHAE 1041

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
              R  +   +   +      +     +  E A L        + +   ++       + E
Sbjct: 1042 EERLARAAEEEQARLERHAEEERLARAAAEQARLERHAEEERLARAAEEQARLE--RHAE 1099

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L          +++   E + +   E+   E   + +R  R A    A  E +  + 
Sbjct: 1100 EERLARAAAEQARLERHAEEERLARAAEEQARLERHAEEERLARAAEEEQARLERHAEEE 1159

Query: 575  RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            R     A            +     ++ A++    E E+    ++   E   ++ +   +
Sbjct: 1160 RLARAAAEQARLERHAEEERLARAAEEQARLERHAEEER----LARAAEEQARLERHAEE 1215

Query: 635  EAMIEGFGKM 644
            E +    G  
Sbjct: 1216 ERLARAAGAS 1225


>gi|312977819|ref|ZP_07789565.1| hypothetical protein LBKG_01210 [Lactobacillus crispatus CTV-05]
 gi|310895126|gb|EFQ44194.1| hypothetical protein LBKG_01210 [Lactobacillus crispatus CTV-05]
          Length = 785

 Score = 40.3 bits (92), Expect = 0.94,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 88/271 (32%), Gaps = 14/271 (5%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           +L  +          +         +++  L++         ++  Y + +      +  
Sbjct: 243 ALNNIRHDLGYLDNPKDQYDQALNDKIDQALRDYSMQ----DIQRVYDEGLAKSKAAIVD 298

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS--LVKGKLSKKPSLREAALLLTLINHP 495
           +    ++   +               Q+L   +    +   S    L+E   L    N  
Sbjct: 299 RLKEAYNRVTKESLDKIVEGRTAAQIQQLAVKATHQKQNNQSDLSKLKENKALELKTNDE 358

Query: 496 AILQEQYQELADI------RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           A L E  ++L +        +++ E  K  +       EQ      ++ +   +    + 
Sbjct: 359 AALAEYKKQLEEKRNLALKNFNDQEELKTRNA-NEQIDEQLKADKAKVERVARDEEVQKR 417

Query: 550 LKQLD-RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             +LD  +   +  +      N       ++  L   +    L++++   +KQ+ Q  A+
Sbjct: 418 NSELDDSRTTISNDFDHAVRNNYDKNNDLFEDNLKKVQERVRLAKEQINQQKQLDQEKAE 477

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            + ++ A       E+ ++   IE  E++ +
Sbjct: 478 EKRQREAEAARKERELDLKQKAIEQNESLAK 508


>gi|301771410|ref|XP_002921097.1| PREDICTED: myosin-7-like [Ailuropoda melanoleuca]
          Length = 1834

 Score = 40.3 bits (92), Expect = 0.94,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 89/235 (37%), Gaps = 20/235 (8%)

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            LQ+       +    G+   +  + R Q    +  +QS+L + + S +    E  +L   
Sbjct: 1514 LQEEISDLTEQLGSSGKTIHELEKVRKQLEVEKLELQSALEEAEASLEHE--EGKILRAQ 1571

Query: 492  INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-ERGFGELL 550
            +    I  E  ++LA+   +  + ++    +               ++ L  ++     L
Sbjct: 1572 LEFNQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDL 1631

Query: 551  KQLDRQVRDAGLWSATTEANI-------------VDVRQGYQQALALYKRFRLLSRQKEE 597
             +++ Q+  A   +A  +  +              ++++    +  L +  + + +  ++
Sbjct: 1632 NEMEIQLSHANRMAAEAQKQVKGLQSLLKAAMMAEELKKEQDTSAHLERMKKNMEQTIKD 1691

Query: 598  IEKQIAQVTA---KGEAEKTAILISILHEVHIQIHQIESQEA-MIEGFGKMSGRL 648
            ++ ++ +      KG  ++   L + + E+  ++   + + A  I+G  K   R+
Sbjct: 1692 LQHRLDEAEQIALKGGKKQLQKLEARVRELENELEAEQKRNAESIKGMRKSERRI 1746


>gi|301605240|ref|XP_002932252.1| PREDICTED: myosin-11-like isoform 2 [Xenopus (Silurana) tropicalis]
          Length = 1981

 Score = 40.3 bits (92), Expect = 0.94,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 94/265 (35%), Gaps = 10/265 (3%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +     +     E E        ++ ELE  L      +++++ R    QA + +  Q  
Sbjct: 900  QEQLQAETELYAEAEELRIRLQAKKQELEEVLHEMEVRLEEEEDRGQQLQAEKKKTLQQM 959

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            Q    +        +K    +       + ++  ++          +E  +L   +N   
Sbjct: 960  QDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDVLVMDDHHNKLTKEKKILEERVNDLT 1019

Query: 497  I-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEIHQRLCER--GFGELLK 551
              L E+ ++  ++    N+ + + S L       E+     E++ ++L        E + 
Sbjct: 1020 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKGRQELEKVKRKLEGEANDLNEQIA 1079

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
             L  Q+ +  +  A  E  +       +   A   +     ++  E+E  I+ +    E+
Sbjct: 1080 DLQAQIAELKMQLAKKEEELQAALARLEDETA---QKNNALKKIRELESHISDLQEDLES 1136

Query: 612  EKTAILISI--LHEVHIQIHQIESQ 634
            EK+A   +     ++  ++  ++++
Sbjct: 1137 EKSARNKAEKSKRDLGEELEALKTE 1161



 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 60/216 (27%), Gaps = 28/216 (12%)

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
              L  +     +   +  ++    +         M+ ++ + +        E +      
Sbjct: 1732 SSLQDEKRRLEARISQLEEELEEEQGNMEGMSDRMRKAVQQAEQLNNELAAERS------ 1785

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL---------CE 543
                  Q+       +   N EL+     +      +       +  ++           
Sbjct: 1786 ----TSQKNESARQQLERQNKELKAKLQEMEGTVKSKFKSTIAALEAKISQLEEQVEQES 1841

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            R     +K L ++ +         E       Q   Q+     R + L RQ EE E++  
Sbjct: 1842 RDKQSTVKTLRQKEKKLKEALLQVEDERKQAEQYKDQSEKGNVRQKQLKRQLEEAEEESQ 1901

Query: 604  QVTAKGEA---------EKTAILISILHEVHIQIHQ 630
            ++ A             E +  L   L+ +  ++ +
Sbjct: 1902 RINASRRKLQRELDEANESSEALSRELNSLKSKLRR 1937


>gi|228999325|ref|ZP_04158905.1| hypothetical protein bmyco0003_38810 [Bacillus mycoides Rock3-17]
 gi|229006880|ref|ZP_04164512.1| hypothetical protein bmyco0002_37820 [Bacillus mycoides Rock1-4]
 gi|228754373|gb|EEM03786.1| hypothetical protein bmyco0002_37820 [Bacillus mycoides Rock1-4]
 gi|228760522|gb|EEM09488.1| hypothetical protein bmyco0003_38810 [Bacillus mycoides Rock3-17]
          Length = 786

 Score = 40.3 bits (92), Expect = 0.94,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 54/162 (33%), Gaps = 19/162 (11%)

Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           ++P +       +++  A + +D N L   +  L         F   +    L +     
Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDHVIDR 507

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +           A  E +  +  + + +A    K+   L R   E+++QI +   +
Sbjct: 508 ARNHIGTDTNKIENMIAKLEESQKNAEREWNEAEEHRKQSEKLHR---ELQRQIIEFNDE 564

Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639
            +           EK          +  ++ Q+ ++Q A ++
Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIHELRQLRKAQLASVK 606


>gi|148672885|gb|EDL04832.1| RIKEN cDNA 6330407J23, isoform CRA_b [Mus musculus]
          Length = 942

 Score = 40.3 bits (92), Expect = 0.94,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 22/197 (11%)

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPA 496
             + +   +   +      +       + S L KG+    PS REA L   L  +     
Sbjct: 538 RKKMAKIDKEKDRFEHELQKYRSFYGDLDSPLPKGEAGGPPSTREAELKLRLRLVEEEAN 597

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           IL  +  EL        E + L + L     E        +      R   E L +L + 
Sbjct: 598 ILGRKIVELEV------ENRGLKAELDDLRGEDFNGSSNPLM-----REQSESLSELRQH 646

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           ++     +     N+ D+ +  ++  A   +++         +      +   +  KT  
Sbjct: 647 LQLVEDETELLRRNVADLEEQNKRITAELNKYKY--------KSSGHDSSRHHDNAKTEA 698

Query: 617 LISILHEVHIQIHQIES 633
           L   L    +QI+++  
Sbjct: 699 LQEELKAARLQINELSG 715


>gi|114654487|ref|XP_001148645.1| PREDICTED: Golgi autoantigen, golgin subfamily a, 5 isoform 2 [Pan
           troglodytes]
          Length = 684

 Score = 40.3 bits (92), Expect = 0.94,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 78/269 (28%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK----LRYYYSQAIRDRLQ 433
           +      + K   +            LE         ++DQ     L+    Q +++RL 
Sbjct: 296 AKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTLQERLH 355

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 356 EADATLKREQESYKQMQSEFA---------ARLNKVEMERQNLAEAITLAER-------K 399

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    +   +    ++     L+     L     +        E++   L E    E L 
Sbjct: 400 YSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLD 459

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 460 SSTANSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHD 519

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   IE
Sbjct: 520 QIAGQKASK--QELETELERLKQEFHYIE 546


>gi|94263198|ref|ZP_01287015.1| DnaB helicase [delta proteobacterium MLMS-1]
 gi|93456416|gb|EAT06536.1| DnaB helicase [delta proteobacterium MLMS-1]
          Length = 494

 Score = 40.3 bits (92), Expect = 0.94,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 53/149 (35%), Gaps = 8/149 (5%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +L  +    E  +L +++  P  +    + ++   +     + +++ + + F + +    
Sbjct: 51  RLPPQNIEAEQCVLGSILLQPGAMGSAVEIVSPDDFYREPHRLIFTAMLALFDKSEPLDL 110

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I+  L +       ++LD     A L S T    +      Y + +      R L + 
Sbjct: 111 ITINSHLQDS------RKLDTVGGPAYLASLTDLVPVATNIGHYARLVRDKAILRRLIQT 164

Query: 595 KEEIEKQIAQVTAKGEA--EKTAILISIL 621
             EI  +  +     +A  ++    +  +
Sbjct: 165 STEIAGRCYEEQDDIDALLDEVEQTVFEI 193


>gi|41322912|ref|NP_958780.1| plectin isoform 1f [Homo sapiens]
 gi|40849932|gb|AAR95678.1| plectin 2 [Homo sapiens]
          Length = 4533

 Score = 40.3 bits (92), Expect = 0.94,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 45/153 (29%), Gaps = 16/153 (10%)

Query: 497  ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            +  +  +        + ELQ+L +       ++     E    R+      +L  +++ +
Sbjct: 2177 LRLQLEETDHQKNLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAE 2236

Query: 557  VRDAGLWSATT-------------EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEK 600
             R   L                  +      R       A   R      L++Q+   EK
Sbjct: 2237 NRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEK 2296

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             + +     +        + L +   ++ Q ++
Sbjct: 2297 MLKEKMQAVQEATRLKAEAELLQQQKELAQEQA 2329



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1664 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1723

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1724 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1761



 Score = 37.6 bits (85), Expect = 6.1,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 19/212 (8%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
               LQQ  Q+ +          ++  R   ++    R    + ++ K  +     E + L
Sbjct: 1376 AKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQA-EAAERSRL 1434

Query: 489  LTLINHPAILQEQYQELADIRY----DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                     ++    +L            ELQ L +       +++    E   +RL  +
Sbjct: 1435 RI----EEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEA--ERLRRQ 1488

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E  ++   +V  A    A  EA     R          +    L  Q EE E+++ Q
Sbjct: 1489 VQDESQRKRQAEVELASRVKAEAEAAREKQRA--------LQALEELRLQAEEAERRLRQ 1540

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +   +    L +       ++    +  A
Sbjct: 1541 AEVERARQVQVALETAQRSAEAELQSKRASFA 1572



 Score = 37.6 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 78/268 (29%), Gaps = 23/268 (8%)

Query: 392  NRSFNTPDERAELEIHLKNCINHIK------DQKLRYYYSQAIR-----DRLQQLFQKYI 440
                 + D         +     I+       Q +R    Q        +R  +  ++  
Sbjct: 1196 RYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALLEEIERHGEKVEECQ 1255

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                 Y    K               + S   K K+           +    ++  +   
Sbjct: 1256 RFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTHYSELTTL 1315

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              Q +   ++ +  L+++         +Q+    E + +          L +   Q +  
Sbjct: 1316 TSQYI---KFISETLRRMEEE-ERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQ 1371

Query: 561  GLWSATT--EANIVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEAEKT 614
                A    +    +V +  + A+   ++ R +  + +++    E +I     + EA + 
Sbjct: 1372 AEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQAEAAER 1431

Query: 615  AILI--SILHEVHIQIHQIESQEAMIEG 640
            + L     +  V +Q+   E Q    EG
Sbjct: 1432 SRLRIEEEIRVVRLQLEATERQRGGAEG 1459


>gi|41322908|ref|NP_958781.1| plectin isoform 1e [Homo sapiens]
 gi|40849934|gb|AAR95679.1| plectin 3 [Homo sapiens]
          Length = 4525

 Score = 40.3 bits (92), Expect = 0.94,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 45/153 (29%), Gaps = 16/153 (10%)

Query: 497  ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            +  +  +        + ELQ+L +       ++     E    R+      +L  +++ +
Sbjct: 2169 LRLQLEETDHQKNLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAE 2228

Query: 557  VRDAGLWSATT-------------EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEK 600
             R   L                  +      R       A   R      L++Q+   EK
Sbjct: 2229 NRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEK 2288

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             + +     +        + L +   ++ Q ++
Sbjct: 2289 MLKEKMQAVQEATRLKAEAELLQQQKELAQEQA 2321



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +   + ++Q +   ++        E          Q+ + L        +Q++ +E+++A
Sbjct: 1656 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1715

Query: 604  QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++   A    +K   L + L +V  ++  + + +A  E
Sbjct: 1716 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1753



 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 19/212 (8%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
               LQQ  Q+ +          ++  R   ++    R    + ++ K  +     E + L
Sbjct: 1368 AKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQA-EAAERSRL 1426

Query: 489  LTLINHPAILQEQYQELADIRY----DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                     ++    +L            ELQ L +       +++    E   +RL  +
Sbjct: 1427 RI----EEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEA--ERLRRQ 1480

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E  ++   +V  A    A  EA     R          +    L  Q EE E+++ Q
Sbjct: 1481 VQDESQRKRQAEVELASRVKAEAEAAREKQRA--------LQALEELRLQAEEAERRLRQ 1532

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +   +    L +       ++    +  A
Sbjct: 1533 AEVERARQVQVALETAQRSAEAELQSKRASFA 1564



 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 78/268 (29%), Gaps = 23/268 (8%)

Query: 392  NRSFNTPDERAELEIHLKNCINHIK------DQKLRYYYSQAIR-----DRLQQLFQKYI 440
                 + D         +     I+       Q +R    Q        +R  +  ++  
Sbjct: 1188 RYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALLEEIERHGEKVEECQ 1247

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                 Y    K               + S   K K+           +    ++  +   
Sbjct: 1248 RFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTHYSELTTL 1307

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              Q +   ++ +  L+++         +Q+    E + +          L +   Q +  
Sbjct: 1308 TSQYI---KFISETLRRMEEE-ERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQ 1363

Query: 561  GLWSATT--EANIVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEAEKT 614
                A    +    +V +  + A+   ++ R +  + +++    E +I     + EA + 
Sbjct: 1364 AEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQAEAAER 1423

Query: 615  AILI--SILHEVHIQIHQIESQEAMIEG 640
            + L     +  V +Q+   E Q    EG
Sbjct: 1424 SRLRIEEEIRVVRLQLEATERQRGGAEG 1451


>gi|52782237|dbj|BAD51965.1| lamin A/C [Macaca fascicularis]
 gi|84579053|dbj|BAE72960.1| hypothetical protein [Macaca fascicularis]
          Length = 571

 Score = 40.3 bits (92), Expect = 0.94,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 101/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A LE  L      ++D+ LR        +RLQ + ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVARLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|325096324|gb|EGC49634.1| p150 dynactin NUDM [Ajellomyces capsulatus H88]
          Length = 1362

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 78/256 (30%), Gaps = 35/256 (13%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +  L+    + ++ +L+ + +K + +           +     +   Q+L      + + 
Sbjct: 287 NPVLKE--VEDLKTKLRVMEKKRVEDREKLKSLETLRSERDKFEVIIQKLQTKYQPQQQE 344

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +   +    +  +     +  E    +     D    +++   + ++F   K    E 
Sbjct: 345 ITQLRKQLKDAMARVEEAERLQAEHESIVEMATLDREMAEEMCEAIKAEFEALKEKSEEL 404

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY--------QQALALYKRF 588
             +    R   + L Q+      +       E     +R+          QQ   L  + 
Sbjct: 405 ELEVEVLREENQELGQVMSPEEKSSQGWLQMERTNERLREALIRLRDMTQQQETDLRNQI 464

Query: 589 RLLSRQKEE------------------------IEKQIAQVTAKGEAEKTAILISILHEV 624
           + L  + E+                        +++Q+  + A+   E+ A       E 
Sbjct: 465 KELEGELEDFAAIKANYEIAKEQLLITEANMEDLKQQVEALGAEDMIEELAEKNMQYQEQ 524

Query: 625 HIQIHQ-IESQEAMIE 639
             ++   IE  E++ E
Sbjct: 525 VNELKAVIEDLESLKE 540


>gi|322693568|gb|EFY85424.1| filament-forming protein [Metarhizium acridum CQMa 102]
          Length = 2026

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 69/222 (31%), Gaps = 18/222 (8%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           L  +      + +      K++ R+ +       L QS      L      RE +L   L
Sbjct: 140 LSIIESHNKRDETITEELTKQHQRNVELAREVTALQQSEQNAKGLLNSAKYREESLKQQL 199

Query: 492 INHPAILQEQYQELADIRYDNNELQKLW------SFLFSDFVEQKYFLPEEIHQRLCERG 545
                + +   + L          + L       + +     E +    +    +  E+ 
Sbjct: 200 ----ELARRNSEWLET-ELKTKSEESLKYRKEKGARIAELQRENEDVKSQVDALKRSEQQ 254

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             E L  +  +  +A +     E       + Y+Q L   +R   +S Q  +   +  + 
Sbjct: 255 LRERLDAMQAKADEALVKLQKQEGAFATTIESYKQELEDQRRLVDMSDQLSKKHAERVRD 314

Query: 606 TAKGEAEKTAILISILHEVHIQIHQ-------IESQEAMIEG 640
               +        + +  V +++ Q       +E + + +EG
Sbjct: 315 LEAEKERLRENYENEIRRVRMELEQERQNVTEMEERISQLEG 356



 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 104/337 (30%), Gaps = 44/337 (13%)

Query: 324  DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP-LV 382
            D    R     ++L       G          G D  S  +   +     L  +      
Sbjct: 914  DHLQARVDELTVELRNAEERVGRLQPRPTPRPGLDDGSQRQQELEAELHDLNNDISDLKR 973

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR-------DRLQQL 435
            D+         +    ++  EL    +  +  ++    +  Y Q +        +++++L
Sbjct: 974  DLDMANTQLENAKAQAEQYRELSQSNEELLADLRGS--QEQYRQEMEAMVEEKDNKIKEL 1031

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
             Q+         R   + ++ RD +G   R  +      +   K    E+A       H 
Sbjct: 1032 SQRIEDMSEELSRSNTELSQLRDSQGDVARKYEDEKTILEDELKRLKEESA------RHA 1085

Query: 496  AILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQ 552
               +   Q+L A     +   Q     L             ++ Q+L             
Sbjct: 1086 EATRYHQQDLRAQAEIASKAQQDYEKELVKHAEA------AKLVQQLRTDYNALKSESAS 1139

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQQALA---------------LYKRFRLLSRQKEE 597
            L  +   A +  A +E++  D RQ  +Q +A               L+++   L+ Q   
Sbjct: 1140 LRAEAESAKVTLAQSESSWEDRRQQLEQEMAELTARREDVNAQNKLLHQQLEGLTAQVAA 1199

Query: 598  IEKQIAQVTAKGEAEKTA----ILISILHEVHIQIHQ 630
            ++++ +    +G+   +       +  L E++  + +
Sbjct: 1200 LQQRRSNGNEEGDEGMSPVHVGDALEGLRELNNYLRR 1236


>gi|297687477|ref|XP_002821239.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           A-like isoform 3 [Pongo abelii]
          Length = 1352

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|196250214|ref|ZP_03148908.1| MutS2 family protein [Geobacillus sp. G11MC16]
 gi|196210398|gb|EDY05163.1| MutS2 family protein [Geobacillus sp. G11MC16]
          Length = 641

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 50/158 (31%), Gaps = 23/158 (14%)

Query: 493 NHPAILQEQYQEL----ADIRYDNNELQKLWSFLFSDFVEQKYFLPE---EIHQRLCERG 545
           ++P +    Y       A + +D   L+  +  L         F       + +R+ ER 
Sbjct: 449 HYPELKAYGYNRPGVVNASVEFDTETLRPTYKLLIGIPGRSNAFDISRRLGLDERIIERA 508

Query: 546 ----------FGELLKQLDRQVRDAGLWSATTEANIVDV---RQGYQQALALYKRFRLLS 592
                        ++  L+R  + A    A   +   +    R  ++Q L   +  +   
Sbjct: 509 KVQVSAESHSVENMIASLERSKKQAEEDEARAHSAREEAERLRAEWEQKLEELEDKKA-- 566

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            Q  E  ++   +    E E    +I+ L  +  +   
Sbjct: 567 EQLAEAAQKATDIIRAAERE-AERIINELRRLQKEKQA 603


>gi|194769560|ref|XP_001966872.1| GF19049 [Drosophila ananassae]
 gi|190618393|gb|EDV33917.1| GF19049 [Drosophila ananassae]
          Length = 303

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 7/123 (5%)

Query: 518 LWSFLFSDFVEQKYFLPEEI-----HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
           +   L   F +      + +     +  L ++      K L++    + L +A  E    
Sbjct: 43  IVKPLLRYFEKINEKDSQILQLQKDNSELHKKFADSQQKDLEKYAHISKLETAYLELQKR 102

Query: 573 --DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             DV+  +QQ  +  +    L  Q + +E+QI  +    E         + +++  +I +
Sbjct: 103 HWDVQDKFQQLQSRIQDVESLKAQIKLLEEQIRALNKTSELAVVKNGEMLANQLREEIEK 162

Query: 631 IES 633
           + S
Sbjct: 163 LRS 165


>gi|154343315|ref|XP_001567603.1| membrane associated protein-like protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1471

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 72/250 (28%), Gaps = 6/250 (2%)

Query: 395  FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
                +  A           H ++++L     +  R +     ++         R  +   
Sbjct: 982  HAEEERLARAAEEQARLERHAEEERLARAAEEQARLQRHDEEERLARAAEEQARLERHAE 1041

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
              R  +   +   +      +     +  E A L        + +   ++       + E
Sbjct: 1042 EERLARAAEEEQARLERHAEEERLARAAAEQARLERHAEEERLARAAEEQARLE--RHAE 1099

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L          +++   E + +   E+   E   + +R  R A    A  E +  + 
Sbjct: 1100 EERLARAAAEQARLERHAEEERLARAAEEQARLERHAEEERLARAAEEEQARLERHAEEE 1159

Query: 575  RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            R     A            +     ++ A++    E E+    ++   E   ++ +   +
Sbjct: 1160 RLARAAAEQARLERHAEEERLARAAEEQARLERHAEEER----LARAAEEQARLERHAEE 1215

Query: 635  EAMIEGFGKM 644
            E +    G  
Sbjct: 1216 ERLARAAGAS 1225


>gi|145486638|ref|XP_001429325.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124396417|emb|CAK61927.1| unnamed protein product [Paramecium tetraurelia]
          Length = 794

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 99/248 (39%), Gaps = 22/248 (8%)

Query: 403 ELEIHLKNCINHIKDQKLRYYY--SQAIRDRLQQL--------FQKYITEHSGYGRYWKK 452
           ++  +        KD  L+        ++++L +L         +K I  +S   + +  
Sbjct: 334 KMIKNQPKINEDPKDALLKQQADEISKLKEQLSKLHKNGGGGGSEKEIQNNSNANQSFYA 393

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
           N + + +    +++    + K +L K     E  +   +     + +++ +EL  +  DN
Sbjct: 394 NLKKQQENLEIEKIKTDEVQK-ELQKLKQDNERLMKERMEKEEQMSRQKQRELEQLIKDN 452

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            +LQK    +     E++        + + E+   + L++L +      +      A+  
Sbjct: 453 EKLQKEKEKVLEQIAEKE-------QKAVEEQNLRQKLEELMQAKEKMVVTGGK--ASEE 503

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV-TAKGEAEKTAILISILHEVHIQIHQI 631
           + ++   Q   L ++ +   +  EE EKQ  ++   + + +     I  L + ++++ + 
Sbjct: 504 EKKKYRLQQKKLKQQSQEHEQLLEEREKQKDELYEIEQKYQSVQEEIEALRKKNLRLRKA 563

Query: 632 ESQEAMIE 639
              EAM+E
Sbjct: 564 HK-EAMVE 570



 Score = 37.6 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 95/280 (33%), Gaps = 35/280 (12%)

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
            EDP   +         KL  +   L        +E    N  +       +LK    ++
Sbjct: 343 NEDPKDALLKQQADEISKLKEQLSKLHKNGGGGGSEKEIQNNSNANQSFYANLKKQQENL 402

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           + +K++    Q    +L+Q  ++ + E     R  K+    R ++   ++L++ +    K
Sbjct: 403 EIEKIKTDEVQKELQKLKQDNERLMKE-----RMEKEEQMSRQKQRELEQLIKDNEKLQK 457

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF-VEQKYFLP 534
                                  ++  +++A+      E Q L   L      ++K  + 
Sbjct: 458 EK---------------------EKVLEQIAEKEQKAVEEQNLRQKLEELMQAKEKMVVT 496

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-------QQALALYKR 587
                   ++ +    K+L +Q ++        E    ++ +         ++  AL K+
Sbjct: 497 GGKASEEEKKKYRLQQKKLKQQSQEHEQLLEEREKQKDELYEIEQKYQSVQEEIEALRKK 556

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
              L +  +E   +I  +  + E +K   L+  +  +  +
Sbjct: 557 NLRLRKAHKEAMVEIKDIQKENEQDK-EELLESIRGLERE 595


>gi|115774659|ref|XP_797583.2| PREDICTED: similar to XCAP-C [Strongylocentrotus purpuratus]
 gi|115964743|ref|XP_001183157.1| PREDICTED: similar to XCAP-C [Strongylocentrotus purpuratus]
          Length = 1289

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 26/296 (8%), Positives = 89/296 (30%), Gaps = 36/296 (12%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRS--FNTPDERAELEIHLKNCINHIKDQK 419
            I          +  ++    +       E+        +   EL   ++       ++ 
Sbjct: 247 LILQGEVEQIAMMKPKAQTEHEEGMLEYLEDIIGSNQFKESIEELAKKVEELNEERGEKL 306

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-----SQRLMQSSLVKG 474
            R    +A+   +++L +             +   +            ++   ++   + 
Sbjct: 307 TR---VKAVESEMEELEKPMKEAQEFLKTENEVTKKKNKLYQKYISECNENEAKAQEKRK 363

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYF 532
            +       E  L    + +   ++E               +KL+      ++  EQK  
Sbjct: 364 AVQDGMKEMEEGLKTMALQNKEKIKE--------------HKKLYKQYEKLAEVAEQKKA 409

Query: 533 LPEEIHQR---------LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
              E  ++                +L+K L ++             + +++ +  ++  +
Sbjct: 410 DFAEFERQDVKCREDLKHTREKQKKLVKNLQKEKTKLEGLLKVPGDSEIEIGELEKRKAS 469

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           L ++ ++   +  +I   +     KG   +     + L     ++++ +SQ+ + +
Sbjct: 470 LEEKLKVEEAKMNDIMASLK-TETKGLQAEKEAKETELMGFQKELNEAKSQKTLAD 524


>gi|118372100|ref|XP_001019247.1| hypothetical protein TTHERM_00849450 [Tetrahymena thermophila]
 gi|89301014|gb|EAR99002.1| hypothetical protein TTHERM_00849450 [Tetrahymena thermophila SB210]
          Length = 1821

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 27/276 (9%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR--- 431
              +++   +   +++ ++    T          ++  +N ++D+ L+  Y Q +  R   
Sbjct: 1047 KKKAMEDENQKTRQQLQDYINTTQKSYNNHIDQMQKSLNQLEDEALK--YQQELTQRELE 1104

Query: 432  ---LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
               L+   +   ++ S + + + +    + Q+  S+  +    ++ K  K   L++  L 
Sbjct: 1105 NQELRNELRLLKSKESNFNQNYIREKDSKIQELRSKIEVLGKELEYKDDKIKDLQQEQL- 1163

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                   ++ +       D     +++Q     +    +E          +        +
Sbjct: 1164 -------SLKKAIDDIKEDFTMTESQIQIYKENIVQKDIEINQIKQTVFEKEQQVYQKEQ 1216

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTA 607
            ++ QL+  +          + +     + +   +   ++  + L R+K ++E +I  +  
Sbjct: 1217 VILQLEHTISKKKEIIDQFKGSSESQIKKFHDRIDEQEQEIKDLQREKADLENRIDSLGI 1276

Query: 608  KGEAE---------KTAILISILHEVHIQIHQIESQ 634
            +   +          +     +  E+  Q  +++ +
Sbjct: 1277 QHREDIDRIIQASKLSEEEKKLYKEMMEQNERMKKE 1312


>gi|324516144|gb|ADY46435.1| 28S ribosomal protein S15 [Ascaris suum]
          Length = 344

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ ++L E       +++  +++ A       E      R+ + +A    +  +    + 
Sbjct: 203 KLLRKLRETD-SAAFEKILSELKIAYHVPKLPEQMTEKRRKAWAEAQLKLRVEKEKEARL 261

Query: 596 EEIEKQIAQVTAKGEAEKTAILIS---ILHEVHIQIHQIES 633
            E+ ++      K E E    L S      E+  ++ ++++
Sbjct: 262 TELHERFIADRDKYEKEIDEKLTSLETEKKEIEKRLKELDA 302


>gi|324500066|gb|ADY40042.1| Myosin-4 [Ascaris suum]
          Length = 1892

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 67/225 (29%), Gaps = 28/225 (12%)

Query: 406  IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              +    + + DQ+ R       + +++   +             +K    +  K    R
Sbjct: 924  KQISELHDRLGDQEDRNADLTRAKKKVETDAENLRKTIEELEARLQKAETDKQAKDQQIR 983

Query: 466  LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
             +Q  +     +     +E               +  +E+          +KL   L   
Sbjct: 984  SLQDEMQLQDENIAKLNKEK--------------KHQEEI---------NRKLMEDL--Q 1018

Query: 526  FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
              E K     ++  +L +    +L   L+R+ R              +++   +    + 
Sbjct: 1019 SEEDKGNHTNKLKGKLEQS-LDDLEDSLEREKRSRNDIEKQKRKVEGELKVAQENIDEIN 1077

Query: 586  KRFRLLSR--QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            ++   +    +K+E E Q      + E +    L   L E   +I
Sbjct: 1078 RQRHEIEANLKKKEAESQAVATRLEEEQDLVNKLKKQLKETQGRI 1122


>gi|322826983|gb|EFZ31353.1| hypothetical protein TCSYLVIO_2334 [Trypanosoma cruzi]
          Length = 1028

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 69/228 (30%), Gaps = 23/228 (10%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           +    RL  L Q+   E     +  ++    R +    Q                  RE 
Sbjct: 389 REQAQRLAALVQRLENERQQERQNDREEEEKRGKMLTQQEEAAPGNGMETERAAARNREE 448

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L  L +     +E     + +  +  E ++    + +   E+          +  E+ 
Sbjct: 449 --LEKLASFLE--KEIVALRSQLETNKREGEEAVHRVKAALSEEHARNMAAFVSQ-EEQR 503

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-----------LSRQ 594
             E +++L R+++DA       E     + +  QQ     K+                 +
Sbjct: 504 TRETIEKLQRELQDAQQHGIELERRREKLWEEVQQLKERLKQAHSDAETLSSKLIVAETK 563

Query: 595 KEEIEKQIAQVTAKGEAEKTA---ILISILHEVH----IQIHQIESQE 635
            EE++  + +     E  + +    L +   E+      Q   ++  E
Sbjct: 564 VEELQFSLQEARHATEGNEASLVCALTARKKELETTSARQKELLQQLE 611



 Score = 37.6 bits (85), Expect = 7.0,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 84/305 (27%), Gaps = 39/305 (12%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL-----KNCINHIKDQ 418
           +   +   EKL        ++  + +         D+ A +   L     K   +  +D 
Sbjct: 220 KALKEEFAEKLSQREKDCQELQSEVQELREQVKKFDDEATIIKLLHGEMKKTLADREEDC 279

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +    +++++    L ++   E     +   ++             + S LV G  S 
Sbjct: 280 LEKRRQIESLQELHDALLERVEREKQNKDKTPVESVPIAHSDAHVSSHVASGLVVGDSSV 339

Query: 479 KPSLREAALLL----TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
               R    L      ++       +    L + R  +    K    + S   EQ     
Sbjct: 340 AELRRRVEALEEEKVLMLREKE---QMTALLLEERRIHRVAVKEREQILSHDREQAQR-L 395

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI----VDVRQGYQQALALYKRFRL 590
             + QRL      E     + + +   + +   EA         R   +    L K    
Sbjct: 396 AALVQRLENERQQERQNDREEEEKRGKMLTQQEEAAPGNGMETERAAARNREELEKLASF 455

Query: 591 LSRQKEEIEKQIAQVTAKGEA----------------------EKTAILISILHEVHIQI 628
           L ++   +  Q+     +GE                       ++       + ++  ++
Sbjct: 456 LEKEIVALRSQLETNKREGEEAVHRVKAALSEEHARNMAAFVSQEEQRTRETIEKLQREL 515

Query: 629 HQIES 633
              + 
Sbjct: 516 QDAQQ 520


>gi|296194815|ref|XP_002745118.1| PREDICTED: ankycorbin isoform 1 [Callithrix jacchus]
          Length = 951

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 100/278 (35%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    + +  +   +      + +  L   
Sbjct: 565 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEEMKEAMHRMIDELNKQVSE--LSQL 622

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 623 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQVTNVSRTKAEDALSEMKSQYSKVLN 682

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 683 ELTQLKQLVDAQKENSISITEHLQVITTLRTAAKEMEEKISSLKEHLAS-KEVEVAKLEK 741

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E +     +++  ++   ++     +  +  +
Sbjct: 742 QLLEEKAAMTDAMVSRSSYEKLQSSLESEVSALASKLKESVKEKEKVHSEVAQIRSEVSQ 801

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 802 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 839


>gi|302658026|ref|XP_003020723.1| hypothetical protein TRV_05174 [Trichophyton verrucosum HKI 0517]
 gi|291184581|gb|EFE40105.1| hypothetical protein TRV_05174 [Trichophyton verrucosum HKI 0517]
          Length = 1431

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 84/236 (35%), Gaps = 28/236 (11%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + +   L+          +   +   +    +     +QR ++    + K S     REA
Sbjct: 938  RELETELKTTKDAIPKVETAIQKLQLEIDSAKRNLADTQRRVKELSEEHKPSAADEKREA 997

Query: 486  ALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFV---EQKYFLPEEIHQR- 540
            +L  T+      L+++ ++L +++     E+Q L   +          +    + + ++ 
Sbjct: 998  SLEKTI----KALEKEIEKLRSEMTGVEEEIQALQDKIMEVGGVRLRGQKAKVDGLKEQI 1053

Query: 541  --LCERGFGELLKQLDRQVRDAGLWSATTEAN------IVDVRQGYQQALALYKRFRLLS 592
              L +      + +   +        +  +A         D+ +  ++A    K    + 
Sbjct: 1054 SLLTDEVSNAEVSKSKNEKLRVKHEKSRADAEAELESVQEDIEKLNEEAKNQAKAVSGIK 1113

Query: 593  RQKEEIEKQIA---------QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++ EE E+ +          +    G+  +     ++  E+  ++   ESQ+A++E
Sbjct: 1114 QKTEEAEEALQTKQEELTALKTELDGKTAELNETRAVEIEMRNKLE--ESQKALVE 1167


>gi|301105597|ref|XP_002901882.1| WD domain-containing protein, putative [Phytophthora infestans T30-4]
 gi|262099220|gb|EEY57272.1| WD domain-containing protein, putative [Phytophthora infestans T30-4]
          Length = 1299

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 87/302 (28%), Gaps = 26/302 (8%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-QKLRY 422
            +       +  + E     +   + +  N      +   +    L        D Q  + 
Sbjct: 744  KNRLMNELKSKVDELTLHNEYQLRLKDLNYKEKIKEVSDKFTAELTQDRQRCGDLQSDKT 803

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                  + +++++   + +E       ++        +  +    +         +   L
Sbjct: 804  EMENEYQKKMREMAATHRSEIQELKTTYEAKVEAEKARYAALEQARGEQNTRFEEESHLL 863

Query: 483  REA--ALLLTLI-NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             E+    L  +   +      + +  A      NEL      L     E      +E+  
Sbjct: 864  VESHTQFLAEMTTEYEQKFAHEQELQAVCEQAKNELIATNEALKRSLEEDAELEVDELKS 923

Query: 540  R--------------------LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
            +                    + ++ F  L K ++ Q  +        +    ++R   +
Sbjct: 924  KYELKLSDEREATLRLKGENGIMKKKFSALQKDIEDQREEIRSLEEKGKELTENIRGLEK 983

Query: 580  QALALYKRFRLLSRQKEEIEKQIAQVTAKG-EAEKTAILIS-ILHEVHIQIHQIESQEAM 637
                  K  R      ++ EK+I  +  K  E EK   ++   + E+  QI   E + A 
Sbjct: 984  DIQGHKKEIREREETIQDKEKRIYDLKKKNQELEKFKFVLDYKIKELKRQIEPREQEIAD 1043

Query: 638  IE 639
            ++
Sbjct: 1044 MK 1045


>gi|237802926|ref|YP_002888120.1| replicative DNA helicase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274160|emb|CAX10954.1| replicative DNA helicase [Chlamydia trachomatis B/Jali20/OT]
          Length = 472

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 46/142 (32%), Gaps = 6/142 (4%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           + +  +    +          E  +L  ++     L      L +  +   E + ++  L
Sbjct: 2   ATQTKKPQPTQLLSLPNSKESEMIVLGCMLTSVNHLNLAANLLQEDDFYFLEHRIIFRVL 61

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            + F   +   P      L          QL+     + L + +  A      + Y + +
Sbjct: 62  QNAFKSDRPMDP-----HLTGEELKRR-DQLNIIGGPSYLITLSEFAGTSAYIEEYAEII 115

Query: 583 ALYKRFRLLSRQKEEIEKQIAQ 604
                 R + +  ++IEK+ A+
Sbjct: 116 RSKSILRKMIQAAKDIEKKAAE 137


>gi|148698986|gb|EDL30933.1| intraflagellar transport 74 homolog (Chlamydomonas) [Mus musculus]
          Length = 600

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 98/293 (33%), Gaps = 18/293 (6%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE--RAELEIHLKNCINHIKDQK 419
             +   K+ +  L+   +  +     +  +       +       E   +     IKD +
Sbjct: 88  QRQILDKSYYLGLLRSKISELTTEINKLQKEIEMYNQENSVYLSYEKRAETLAVEIKDFQ 147

Query: 420 LRYYYSQAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +      + D+L    +  + +++++       +  +  D     ++  +  +   +  
Sbjct: 148 GQLADYNMLVDKLNTNTEMEEVMSDYNMLKAQNDRETQSMDVIFTERQAKEKQIRSVEEE 207

Query: 478 KKPSLREAA-LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            +   + A  ++  +   P    +  +          EL  L   L S  ++++    E 
Sbjct: 208 VEQEKQAADGIIKNM--SPEKQVKYIEMKTTNEKLLQELDTLQQQLDSLNMKKESLETEI 265

Query: 537 IHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            H ++ +      E L +L+           +  + + +  +  +Q     +    + RQ
Sbjct: 266 AHSQVKQEAVLLYEKLYELESHRDQMIAEDKSMGSPMEERERLLKQVKEDNQEIASMERQ 325

Query: 595 KEEIEKQIAQVTAK-----GEAEKTA-ILISILHEVHIQIHQIESQEAMIEGF 641
             +I+++I Q + +      + E+    +     E+  +   ++   A IE F
Sbjct: 326 LTDIKEKINQFSEEIRQLDMDLEEHQGEMNQKYKELKKREENMD---AFIETF 375


>gi|126308737|ref|XP_001371531.1| PREDICTED: similar to myosin, heavy polypeptide 4, skeletal muscle
            [Monodelphis domestica]
          Length = 1938

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 83/277 (29%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  ++   +    +       +      ELE   K     ++D +      
Sbjct: 1351 EEEQEAKAELQRAMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1410

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1411 NSKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQRNFDKVLSEWKQKYEETQAEL 1470

Query: 479  KPSLREAALLLT-LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E+  L T L       +E   +L  ++ +N  LQ+  S L               
Sbjct: 1471 EASQKESRALSTELFKMKNAYEESLDQLETLKRENKNLQQEISDLTEQIATGGK------ 1524

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +         +A + +     +       R   +  +  +
Sbjct: 1525 -----------QIHELEKIKKQIEQEKGELQAALEEAEASLEHEEGKILR---IQLELNQ 1570

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1571 VKSEIDRKIAEKDEEIDQLKRNHLRVVESMQSTLDAE 1607


>gi|119596644|gb|EAW76238.1| myosin, heavy polypeptide 7B, cardiac muscle, beta, isoform CRA_c
            [Homo sapiens]
          Length = 1961

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 86/279 (30%), Gaps = 13/279 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
              +  +  +   L   D        N        +A L+   +     ++ +K       
Sbjct: 1563 ELSQVKAEVDRKLAEKDEECANLRRNHQRAVESLQASLDAETRARNEALRLKKKMEGDLN 1622

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS---LR 483
             +  +L    ++     +       +    +  +   QRL      + +  ++ +     
Sbjct: 1623 DLELQLGHATRQATEAQAATRLMQAQLKEEQAGRDEEQRLAAELHEQAQALERRASLLAA 1682

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E   L   +      +   ++  ++      L  L S       ++K    +    +L  
Sbjct: 1683 ELEELRAALEQGERSRRLAEQ--ELLEATERLNLLHSQNTGLLNQKKKLEAD--LAQLSG 1738

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   ++ + + +     +        ++++    +  L +  + L +   E++ ++ 
Sbjct: 1739 EVEEAAQERREAEEKAKKAITDAA-MMAEELKKEQDTSAHLERMKKTLEQTVRELQARLE 1797

Query: 604  QVTAK---GEAEKTAILISILHEVHIQI--HQIESQEAM 637
            +       G  ++   L + + E+  ++   Q +  EA+
Sbjct: 1798 EAEQAALRGGKKQVQKLEAKVRELEAELDAEQKKHAEAL 1836


>gi|119571563|gb|EAW51178.1| hCG27198, isoform CRA_d [Homo sapiens]
          Length = 1581

 Score = 40.3 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 93/335 (27%), Gaps = 17/335 (5%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 1003 RRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 1062

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 1063 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1122

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E  L   
Sbjct: 1123 RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELEGKLATL 1181

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 1182 SDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKNQLEESEFT- 1240

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 1241 ----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1296

Query: 609  GEA---------EKTAILISILHEVHIQIHQIESQ 634
                         + +  ++ ++++  Q+ +   +
Sbjct: 1297 MNELMKKHKAAVAQASRDLAQINDLQAQLEEANKE 1331



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 96/311 (30%), Gaps = 46/311 (14%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R        +   + L  +++  + E E++     ++       L+  +  + DQ  R  
Sbjct: 1135 RDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREK-----RELEGKLATLSDQVNRRD 1189

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +      RL++  ++     +               K    +L    L + + +   +++
Sbjct: 1190 FESE--KRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKN-QLEESEFTCAAAVK 1246

Query: 484  EAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY----------- 531
                +   I    + + +  +    +    + LQ+  + + +   E +            
Sbjct: 1247 ARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKA 1306

Query: 532  ---------FLPEEIHQRLCER-----GFGELLKQLDRQVRDAGLWSATT------EANI 571
                         ++  +L E         E L+ L  QV                EA I
Sbjct: 1307 AVAQASRDLAQINDLQAQLEEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKI 1366

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVH 625
             ++    +      KR   L+ + +E  +++ +           E E+   L   L +  
Sbjct: 1367 RELETRLEFERTQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTK 1426

Query: 626  IQIHQIESQEA 636
             ++ ++  +EA
Sbjct: 1427 EEMGELARKEA 1437


>gi|306844838|ref|ZP_07477421.1| ATP-dependent chaperone ClpB [Brucella sp. BO1]
 gi|306274770|gb|EFM56551.1| ATP-dependent chaperone ClpB [Brucella sp. BO1]
          Length = 873

 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 83/249 (33%), Gaps = 32/249 (12%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP--- 480
           Y     +RL+ +  +  T       +  +             +  S+L+K  L++     
Sbjct: 252 YRGEFEERLKAVLSEVQTAAGQIILFIDEMHTLVGAGKTDGAMDASNLLKPALARGELHC 311

Query: 481 ---SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPE 535
              +  E       +   A L  ++Q +        +   +   L   + +         
Sbjct: 312 VGATTLEEY--RKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDS 369

Query: 536 EIHQ-------RLCERGF-GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK- 586
            +          + +R    + +  +D       +   +    + ++ +   Q     + 
Sbjct: 370 ALVAAATLSNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPEELDEIDRRIMQLKIEREA 429

Query: 587 -----------RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                      R + + ++  ++E++ A++TAK +AEK  + ++   ++  Q+ +  +  
Sbjct: 430 LKVETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAA--DLKRQLEEARNAL 487

Query: 636 AMIEGFGKM 644
           A+ +  G+ 
Sbjct: 488 AIAQRNGEF 496



 Score = 38.3 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/210 (9%), Positives = 66/210 (31%), Gaps = 14/210 (6%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++KY+ + +   R ++           +  +++    K +   K  + ++AL+     
Sbjct: 318 EEYRKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAATL 377

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +    +L   + S   E        +  ++            
Sbjct: 378 SNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPEELDEIDRRIMQLKIEREALK------ 431

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                 +       E  + D+ +   +  A ++  +       ++++Q+ +        +
Sbjct: 432 VETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAADLKRQLEEARNALAIAQ 491

Query: 614 TAILISI--------LHEVHIQIHQIESQE 635
                          + ++  Q+   ESQE
Sbjct: 492 RNGEFQKAGELAYGTIPQLEKQLADAESQE 521


>gi|301768224|ref|XP_002919530.1| PREDICTED: centrosomal protein of 164 kDa-like [Ailuropoda
           melanoleuca]
          Length = 1453

 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 66/224 (29%), Gaps = 22/224 (9%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRY---WKKNARHRDQKGPSQRLMQSSLVKGK 475
             +    Q +R+ L+ L +          R      K      +K     L        +
Sbjct: 685 AEQEASLQRLREELESLQRAERASLEQRSRQTLEQLKEELEASEKREQALLNAEKEAALQ 744

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLP 534
             ++   RE       +      +E   EL  +        +++   L     E +    
Sbjct: 745 KLREQLDRERKEATAALE-----REHRAELERLSSSLEAKHREVVRSLRKKTEEAQKKEA 799

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            ++ + L         +       +  L     E      R+            R + + 
Sbjct: 800 AQLQENLGRAEQRAQQRVHQVLEYEQELSGLLREKRQEVERE----------HERKMDKM 849

Query: 595 KEEIEKQIAQVTAKGEAEKT---AILISILHEVHIQIHQIESQE 635
           KEE ++ +A+   + EAE+    A L+  L     ++ +   +E
Sbjct: 850 KEEHQRVVAEAREQYEAEERKQRAELLGHLTGELERLRRSHERE 893


>gi|292623901|ref|XP_696785.3| PREDICTED: si:ch211-160j6.2 [Danio rerio]
          Length = 1050

 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 80/232 (34%), Gaps = 20/232 (8%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +    Q ++    QL Q           Y +   + R Q G   +    + V+   +   
Sbjct: 208 KRLLLQRLQTHDHQLNQDNHQNQEYSPLYQEPQEQLRLQAGQLNQAASPTGVRSSTALTQ 267

Query: 481 SLREA--ALLLTLINHPAILQEQY-QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +   AL ++ ++ P  LQ+   ++LA I     ++++L   L     E      E +
Sbjct: 268 RPVDFPSALQVSKVHSPERLQKVEGEQLAVITGLRTQVKELEEKLVDQTQE-----VERL 322

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEA----------NIVDVRQGYQQALALYKR 587
              L      + L+ L+ + +       T+            +  DV     +     ++
Sbjct: 323 RSELGATDLEKQLEVLESENQRLKQELKTSHTQTSCSAARCPHSQDVEVLRGELCRKDEQ 382

Query: 588 FRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHEVHIQIHQIESQEAM 637
           +R   R+   +E Q+   +A  +   ++        HE+  Q+ +     ++
Sbjct: 383 WRERERRLAALEMQLQDRSAVVEELQQQLEEAAQRRHELQEQLEEASGHRSL 434


>gi|254717935|ref|ZP_05179746.1| chaperone clpB [Brucella sp. 83/13]
 gi|265982877|ref|ZP_06095612.1| chaperone clpB [Brucella sp. 83/13]
 gi|306840202|ref|ZP_07472980.1| ATP-dependent chaperone ClpB [Brucella sp. NF 2653]
 gi|264661469|gb|EEZ31730.1| chaperone clpB [Brucella sp. 83/13]
 gi|306404715|gb|EFM61016.1| ATP-dependent chaperone ClpB [Brucella sp. NF 2653]
          Length = 874

 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 83/249 (33%), Gaps = 32/249 (12%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP--- 480
           Y     +RL+ +  +  T       +  +             +  S+L+K  L++     
Sbjct: 252 YRGEFEERLKAVLSEVQTAAGQIILFIDEMHTLVGAGKTDGAMDASNLLKPALARGELHC 311

Query: 481 ---SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPE 535
              +  E       +   A L  ++Q +        +   +   L   + +         
Sbjct: 312 VGATTLEEY--RKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDS 369

Query: 536 EIHQ-------RLCERGF-GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK- 586
            +          + +R    + +  +D       +   +    + ++ +   Q     + 
Sbjct: 370 ALVAAATLSNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPEELDEIDRRIMQLKIEREA 429

Query: 587 -----------RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                      R + + ++  ++E++ A++TAK +AEK  + ++   ++  Q+ +  +  
Sbjct: 430 LKVETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAA--DLKRQLEEARNAL 487

Query: 636 AMIEGFGKM 644
           A+ +  G+ 
Sbjct: 488 AIAQRNGEF 496



 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/210 (9%), Positives = 66/210 (31%), Gaps = 14/210 (6%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++KY+ + +   R ++           +  +++    K +   K  + ++AL+     
Sbjct: 318 EEYRKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAATL 377

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +    +L   + S   E        +  ++            
Sbjct: 378 SNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPEELDEIDRRIMQLKIEREALK------ 431

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                 +       E  + D+ +   +  A ++  +       ++++Q+ +        +
Sbjct: 432 VETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAADLKRQLEEARNALAIAQ 491

Query: 614 TAILISI--------LHEVHIQIHQIESQE 635
                          + ++  Q+   ESQE
Sbjct: 492 RNGEFQKAGELAYGTIPQLERQLADAESQE 521


>gi|254707601|ref|ZP_05169429.1| chaperone clpB [Brucella pinnipedialis M163/99/10]
 gi|254708861|ref|ZP_05170672.1| chaperone clpB [Brucella pinnipedialis B2/94]
 gi|254713716|ref|ZP_05175527.1| chaperone clpB [Brucella ceti M644/93/1]
 gi|254715935|ref|ZP_05177746.1| chaperone clpB [Brucella ceti M13/05/1]
 gi|256030388|ref|ZP_05444002.1| chaperone clpB [Brucella pinnipedialis M292/94/1]
 gi|256158371|ref|ZP_05456269.1| chaperone clpB [Brucella ceti M490/95/1]
 gi|256253789|ref|ZP_05459325.1| chaperone clpB [Brucella ceti B1/94]
 gi|260169297|ref|ZP_05756108.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Brucella sp.
           F5/99]
 gi|261217697|ref|ZP_05931978.1| chaperone clpB [Brucella ceti M13/05/1]
 gi|261220922|ref|ZP_05935203.1| chaperone protein clpB [Brucella ceti B1/94]
 gi|261315089|ref|ZP_05954286.1| chaperone clpB [Brucella pinnipedialis M163/99/10]
 gi|261316354|ref|ZP_05955551.1| chaperone clpB [Brucella pinnipedialis B2/94]
 gi|261321456|ref|ZP_05960653.1| chaperone clpB [Brucella ceti M644/93/1]
 gi|261758809|ref|ZP_06002518.1| chaperone protein clpB [Brucella sp. F5/99]
 gi|265987426|ref|ZP_06099983.1| chaperone protein clpB [Brucella pinnipedialis M292/94/1]
 gi|265996882|ref|ZP_06109439.1| chaperone protein clpB [Brucella ceti M490/95/1]
 gi|260919506|gb|EEX86159.1| chaperone protein clpB [Brucella ceti B1/94]
 gi|260922786|gb|EEX89354.1| chaperone clpB [Brucella ceti M13/05/1]
 gi|261294146|gb|EEX97642.1| chaperone clpB [Brucella ceti M644/93/1]
 gi|261295577|gb|EEX99073.1| chaperone clpB [Brucella pinnipedialis B2/94]
 gi|261304115|gb|EEY07612.1| chaperone clpB [Brucella pinnipedialis M163/99/10]
 gi|261738793|gb|EEY26789.1| chaperone protein clpB [Brucella sp. F5/99]
 gi|262551350|gb|EEZ07340.1| chaperone protein clpB [Brucella ceti M490/95/1]
 gi|264659623|gb|EEZ29884.1| chaperone protein clpB [Brucella pinnipedialis M292/94/1]
          Length = 874

 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 83/249 (33%), Gaps = 32/249 (12%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP--- 480
           Y     +RL+ +  +  T       +  +             +  S+L+K  L++     
Sbjct: 252 YRGEFEERLKAVLSEVQTAAGQIILFIDEMHTLVGAGKTDGAMDASNLLKPALARGELHC 311

Query: 481 ---SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPE 535
              +  E       +   A L  ++Q +        +   +   L   + +         
Sbjct: 312 VGATTLEEY--RKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDS 369

Query: 536 EIHQ-------RLCERGF-GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK- 586
            +          + +R    + +  +D       +   +    + ++ +   Q     + 
Sbjct: 370 ALVAAATLSNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPEELDEIDRRIMQLKIEREA 429

Query: 587 -----------RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                      R + + ++  ++E++ A++TAK +AEK  + ++   ++  Q+ +  +  
Sbjct: 430 LKVETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAA--DLKRQLEEARNAL 487

Query: 636 AMIEGFGKM 644
           A+ +  G+ 
Sbjct: 488 AIAQRNGEF 496



 Score = 38.3 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/210 (9%), Positives = 66/210 (31%), Gaps = 14/210 (6%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++KY+ + +   R ++           +  +++    K +   K  + ++AL+     
Sbjct: 318 EEYRKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAATL 377

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +    +L   + S   E        +  ++            
Sbjct: 378 SNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPEELDEIDRRIMQLKIEREALK------ 431

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                 +       E  + D+ +   +  A ++  +       ++++Q+ +        +
Sbjct: 432 VETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAADLKRQLEEARNALAIAQ 491

Query: 614 TAILISI--------LHEVHIQIHQIESQE 635
                          + ++  Q+   ESQE
Sbjct: 492 RNGEFQKAGELAYGTIPQLEKQLADAESQE 521


>gi|239941657|ref|ZP_04693594.1| peptide chain release factor 2 [Streptomyces roseosporus NRRL
           15998]
 gi|239988119|ref|ZP_04708783.1| peptide chain release factor 2 [Streptomyces roseosporus NRRL
           11379]
          Length = 352

 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 2/96 (2%)

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I   L        +  L+ Q     LW    +A    +        A  ++   L  + +
Sbjct: 4   IEAVLDLDALRADIAALEEQAAAPSLWD-DPDAA-QKITSKLSHLQAEVRKAEALRGRID 61

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           ++E       A+G+A+  A   + L  V   + ++E
Sbjct: 62  DLEVLFELAEAEGDADAQAEAETELESVKKALDEME 97


>gi|221484984|gb|EEE23274.1| intraflagellar transport protein component IFT74/72, putative
           [Toxoplasma gondii GT1]
          Length = 606

 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 66/226 (29%), Gaps = 14/226 (6%)

Query: 411 CINHIKDQKLRYYY-SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
               + ++  +     + + ++  +L         G GR  +   +   +   S+    +
Sbjct: 314 LSRRLPEEDEQEQQKLRLLAEKDAELSAFIERYSKGEGREKRSATQAAGEAELSEAEKLN 373

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           SL++ +L   P   +A  L   +N      ++ +            Q L         +Q
Sbjct: 374 SLLEEQLRAVPMPEQAETLARALNETKTALQKAE------------QDLLEAKSQLEEKQ 421

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           K    EE  + + +     + K L+    +        +       +   Q     K  R
Sbjct: 422 KELYREENMEAISKEELRVVCKHLEDMRGEIAEKLDKADDLRRLTEEEQNQLTHAEKHLR 481

Query: 590 -LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             L   +   E    +        +   +   L ++  ++ +    
Sbjct: 482 GNLEEVRAATEAATNKKNEAMNRLRENSVHQRLADLEAELERTRRS 527


>gi|213019186|ref|ZP_03334993.1| hypothetical protein C1A_958 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995295|gb|EEB55936.1| hypothetical protein C1A_958 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 340

 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 83/220 (37%), Gaps = 23/220 (10%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             +  +     ++   E        +K  +  + +  S    + SL            EA
Sbjct: 11  SKVEKKFAHKERELTQEKHNLYEEERKFGQKIETERKSFLKEKKSL--------EEKLEA 62

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE------EIHQ 539
            ++  +     + ++  +E  ++     EL    S+L     E++  L E      E+ +
Sbjct: 63  KMIHIIGITDEL-EKVTKEKDELAAQEKELLHKISYLCKQLQEKEANLTERKKLIIELKR 121

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           ++    + EL K++++  ++    S   +    +    Y +   L+KR   L  + +E++
Sbjct: 122 KIDNDKYEELYKEVEKLSKEKEELSKEIDKLRKEKDILYMKKEELHKRKEELCVKLDELQ 181

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +  ++  K +        ++  E+  +  +++  + +I+
Sbjct: 182 CKFKEIDQKNK--------NLSQELKRKFEELDKADGLIK 213


>gi|194223290|ref|XP_001492226.2| PREDICTED: similar to tripartite motif-containing 39 [Equus
           caballus]
          Length = 487

 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 69/187 (36%), Gaps = 2/187 (1%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
             + R       +   S     ++   +   I   ++  + ++ L+   Y++ E   L  
Sbjct: 70  RKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYEDQEAVCLIC 129

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ- 579
            +            ++  Q   E+   + L+ L++++++     ++ E    ++++  + 
Sbjct: 130 AISHTHRAHTVVPLDDATQEYKEK-LQKCLEPLEQKLQEITRCKSSEEKKPGELKRLVES 188

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +   + K F  L R+ +E ++ +     + E +    L      +  +   +    A +E
Sbjct: 189 RRQQILKEFEELHRRLDEEQQMLLSRLEEEEQDILQRLRENAAHLGDKRRDLAHLAAEVE 248

Query: 640 GFGKMSG 646
           G    SG
Sbjct: 249 GKCLQSG 255


>gi|184185450|gb|ACC68856.1| kinesin-like protein KIF3Abeta (predicted) [Rhinolophus
           ferrumequinum]
          Length = 696

 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 28/313 (8%), Positives = 87/313 (27%), Gaps = 16/313 (5%)

Query: 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
           + + ++C +              L   +     +    +    +D             +K
Sbjct: 283 NSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEELKK 342

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + E   +         E+            +   +   +            +   D+  
Sbjct: 343 KLEEGEEISGSDISGSEEDDDEEGEVGEDGEKRKKRRGSSSSSSSDSTCSVIEKPLDKF- 401

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
              Q    + S       +     ++K    +L      + K   +   RE  LL     
Sbjct: 402 LPNQAGKKKVSPDKMVEMQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQE 461

Query: 494 HPAILQEQYQELADIRYDNNELQKLW----SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           H ++L    ++L+ +       +K+       L     ++K      +      +   +L
Sbjct: 462 HQSLL----EKLSALE------KKVIVGGVDLLAKAEEQEKLLEESNMELEERRKRAEQL 511

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            ++L+ + ++         +   + +   ++   ++        +  +++++  +   +G
Sbjct: 512 RRELEEKEQERLDIEEKYTSLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQEHQR-EIEG 570

Query: 610 EAEKTAILISILH 622
             E    L   L 
Sbjct: 571 LLENIRQLSRELR 583


>gi|167463676|ref|ZP_02328765.1| chromosome segregation SMC protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322382557|ref|ZP_08056437.1| chromosome condensation and segregation SMC ATPase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153473|gb|EFX45878.1| chromosome condensation and segregation SMC ATPase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 1192

 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 67/233 (28%), Gaps = 26/233 (11%)

Query: 422 YYYSQAIRDRLQ-QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
             Y Q     L   +  + + + +      +   R     G       S     +  KK 
Sbjct: 614 DEYRQVFSSLLGNVIIAESLEDANRIAARAQYRYRVVTLDGDVVNPGGSMTGGSQQQKKT 673

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +L        +      ++     L  ++  +  ++ L + +  D  + +    +   +R
Sbjct: 674 NLLSRQ--RHMEELENEIRTYRDRLGQLK--HKAIE-LHNRMQQDNEKLEKLREKSEQKR 728

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----RFRLLSRQKE 596
           + E+     L  L+ ++R           +   V     Q     K    +   L R++ 
Sbjct: 729 IEEQQIRAELAPLEAEMRRVDDQLKLDVQDRESVDTEKHQWETSIKAGRDKLEELQREEA 788

Query: 597 EIEKQIAQVTAKGEAEKTAIL----------------ISILHEVHIQIHQIES 633
            +++ I       +  ++                   +     +  Q+ +++ 
Sbjct: 789 ALQQAIRDAEQSRKENESQKEELQTQLTELKIKVASALQEKQSLQDQLRRLQQ 841



 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 67/216 (31%), Gaps = 11/216 (5%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +  RDRL QL  K I  H+   +  +K  + R++    +   Q    +    +    R 
Sbjct: 689 IRTYRDRLGQLKHKAIELHNRMQQDNEKLEKLREKSEQKRIEEQQIRAELAPLEAEMRRV 748

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              L   +     +  +  +          ++     L     E+              +
Sbjct: 749 DDQLKLDVQDRESVDTEKHQWET------SIKAGRDKLEELQREEAALQQAIRDAEQSRK 802

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                 ++L  Q+ +  +  A+       ++   ++    Y           E+  Q+ +
Sbjct: 803 ENESQKEELQTQLTELKIKVASALQEKQSLQDQLRRLQQDYHDQTRELEANRELLAQLKE 862

Query: 605 VTAKGEAEKTAI--LISILHEVHIQI--HQIESQEA 636
                + E      L+  L E   ++   Q++++ A
Sbjct: 863 DMKWHDQESAEQARLLEELRE-KKELCCRQMDTKRA 897


>gi|149040541|gb|EDL94579.1| eukaryotic translation initiation factor 3, subunit 10 (theta)
           [Rattus norvegicus]
          Length = 1354

 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYIKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|118102327|ref|XP_419237.2| PREDICTED: similar to protein tyrosine phosphatase, receptor type,
           f polypeptide (PTPRF), interacting protein (liprin),
           alpha 4 [Gallus gallus]
          Length = 1203

 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 18/274 (6%), Positives = 64/274 (23%), Gaps = 36/274 (13%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
                +       +        +      + D   +    Q    R     ++   E   
Sbjct: 158 LFEHHKALDEKVRERLRASLERVATLEEQLVDAHRQVAALQQGATREAPASERDEREPKE 217

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             +               + L + +    +  +  S   A++         +   +   +
Sbjct: 218 AAQKLPWKDEAGRVVELQELLEKQNFEVVQAKEHISALAASVAEL---EEDLGTARKDLI 274

Query: 506 ADIRYDNNELQKLWSFLFS---------------DFVEQKYFLPEEIHQRLCER------ 544
                 +   + L   L                    +++     ++  +L         
Sbjct: 275 KSEEMSSKYQRDLREALAQKEDMEERITTLEKRYLAAQREATSIHDLKDKLESELANKES 334

Query: 545 ------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL----LSRQ 594
                      L++L          +      + +V     Q +A   + +     +   
Sbjct: 335 LHRQCEEKARHLQELLELAEQKLQQTMRKAETLPEVEAELAQRIAALTKAKERHGSIEEH 394

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             ++E Q+ +   +    +    ++   E + ++
Sbjct: 395 LRQLESQLEEKNQELARARQREKMNE--EHNKRL 426


>gi|1408192|gb|AAB03660.1| myosin heavy chain [Placopecten magellanicus]
          Length = 1941

 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 82/299 (27%), Gaps = 40/299 (13%)

Query: 376  VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
               +      ++ E  NR+    D++ ++   L     +++    +       + RLQQ 
Sbjct: 1365 NNEIQQWRSKFESEGANRTEELEDQKRKILGKLSEAEQNMEAANAKASALDKAKSRLQQE 1424

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-AALLLTLINH 494
             +    E         +  + +     +    QS +   +   + S +E       L   
Sbjct: 1425 LEDLSIEVDRANANVNQMEKKQRAFDKTTSEWQSKVNSLQSELENSQKESRGYSAELYRI 1484

Query: 495  PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-------------YFLPEEIHQRL 541
             A ++E    +  +R +N  L      L     E                   EE+   L
Sbjct: 1485 KASVEEYQDSIGSLRRENKNLADEIHDLTDQLSEGGRSSHELDKARRRLEMEKEELQAAL 1544

Query: 542  CERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR------------ 587
             E      +   ++ R   +        +  I +  + +      ++R            
Sbjct: 1545 EEAEGALEQEEAKVMRAQLEIATVRNEIDKRIQEKEEEFDNTRRNHQRALESMQASLEAE 1604

Query: 588  ----------FRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHEVHIQIHQIESQ 634
                       + L +   E+E  +           +        + E+   I + + Q
Sbjct: 1605 AKGKADALRIKKKLEQDINELEVALDASNRGKAEMEKTVKRYQQQIREMQTSIEEEQRQ 1663



 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 79/234 (33%), Gaps = 18/234 (7%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + I+ +++        +        +K+ + +  K      +Q  + +         +E
Sbjct: 936  LEGIKKKMEGDNANLKKDIGELEHSLQKSEQEKAHKDNQISTLQGEMSQQDEHIGKLNKE 995

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCE 543
               L          ++    L       N L KL + L     E +     E+  +   E
Sbjct: 996  KKALE------EANKKTSDSLQAEEDKCNHLNKLKAKLEQALDELEDNLEREKKVRGDVE 1049

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-------LSRQKE 596
            +   ++ + L     +             +VR+   +   L  +          L R+ +
Sbjct: 1050 KAKSKVEQDLKSTQENVEDLERVKRELEENVRRKEAEITTLNSKLEDEQNLVSQLQRKIK 1109

Query: 597  EIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQEAMIEGFGKMSGRL 648
            E++ +I ++  + EAE+ A         E++ ++ ++   E + E  G  S ++
Sbjct: 1110 ELQARIEELEEELEAERNARSKVEKQRAELNRELEEL--GERLDEAGGATSAQI 1161


>gi|73972054|ref|XP_538824.2| PREDICTED: similar to tripartite motif-containing 39 isoform 2
           isoform 1 [Canis familiaris]
          Length = 488

 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 69/187 (36%), Gaps = 2/187 (1%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
             + R       +   S     ++   +   I   ++  + ++ L+   Y++ E   L  
Sbjct: 70  RKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYEDQEAVCLIC 129

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ- 579
            +            ++  Q   E+   + L+ L++++++     ++ E    ++++  + 
Sbjct: 130 AISHTHRAHTVVPLDDATQEYKEK-LQKCLEPLEQKLQEITRCKSSEEKKPGELKRLVEC 188

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +   + K F  L R+ +E ++ +     + E +    L      +  +   +    A +E
Sbjct: 189 RRQQILKEFEELHRRLDEEQQMLLSRLEEEEQDILQRLRENAAHLGDKRRDLAHLAAEVE 248

Query: 640 GFGKMSG 646
           G    SG
Sbjct: 249 GKCLQSG 255


>gi|57640023|ref|YP_182501.1| hypothetical protein TK0088 [Thermococcus kodakarensis KOD1]
 gi|57158347|dbj|BAD84277.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis
           KOD1]
          Length = 378

 Score = 40.3 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                ++ +L+ ++       A  E  I  +RQ              L +Q   +E+ + 
Sbjct: 151 EECQAIIAKLENELEKEKQERAELEKQIEYLRQQATFCNMTQVENEQLKKQLRILEQALE 210

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +                + E+  QI ++++Q+   E F + S
Sbjct: 211 EKN------------QRIRELERQIEELQAQQWSWETFREKS 240


>gi|332821883|ref|XP_517925.3| PREDICTED: kinesin family member 3A isoform 7 [Pan troglodytes]
          Length = 726

 Score = 40.3 bits (92), Expect = 0.97,   Method: Composition-based stats.
 Identities = 28/313 (8%), Positives = 87/313 (27%), Gaps = 16/313 (5%)

Query: 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
           + + ++C +              L   +     +    +    +D             +K
Sbjct: 313 NSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEELKK 372

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + E   +         E+            +   +   +            +   D+  
Sbjct: 373 KLEEGEEISGSDISGSEEDDDEEGEVGEDGEKRKKRRGSSSSSSSDSTCSVIEKPLDKF- 431

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
              Q    + S       +     ++K    +L      + K   +   RE  LL     
Sbjct: 432 LPNQAGKKKVSPDKMIEMQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQE 491

Query: 494 HPAILQEQYQELADIRYDNNELQKLW----SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           H ++L    ++L+ +       +K+       L     ++K      +      +   +L
Sbjct: 492 HQSLL----EKLSALE------KKVIVGGVDLLAKAEEQEKLLEESNMELEERRKRAEQL 541

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            ++L+ + ++         +   + +   ++   ++        +  +++++  +   +G
Sbjct: 542 RRELEEKEQERLDIEEKYTSLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQEHQR-EIEG 600

Query: 610 EAEKTAILISILH 622
             E    L   L 
Sbjct: 601 LLENIRQLSRELR 613


>gi|327276613|ref|XP_003223064.1| PREDICTED: centrosomal protein of 120 kDa-like [Anolis
           carolinensis]
          Length = 968

 Score = 40.3 bits (92), Expect = 0.97,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 86/273 (31%), Gaps = 47/273 (17%)

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
                    ++ +  +        ++L++    ++   +   R   +      +K  ++ 
Sbjct: 629 RETLEYKAALELEMWKELQEDLFENQLKKKELAHMQTLAEEWRKRDREREALVKKKVAEY 688

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
            +    ++  L+     RE  L         + + + + LA+   +  ELQ     +  +
Sbjct: 689 TVLEEKLQKTLTD-LEKREKQLASA---ETELQRLKKELLAEHERNRQELQDTIRRIKEE 744

Query: 526 FVEQKYFLPEEIHQRLCER---------------GFGELLKQLDRQVRDAGLWSATTEAN 570
              Q      +I Q   ++                  +  +Q  +Q          +E +
Sbjct: 745 GAHQVELERAKIRQLEEDKVRLHQQIYEGENKLKAMEKEFQQYKQQQVSKPEIRLQSEIS 804

Query: 571 IVDVRQGYQQ-------------------ALALYKRFRL---------LSRQKEEIEKQI 602
           I+ + + Y +                   AL    R +          L +Q++E+E   
Sbjct: 805 ILTLEKVYLERKLESATKAKLHYKQQWGRALKELARLKQREQESAIARLKKQQQELEHMR 864

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +  A  E E        L ++  ++++++ +E
Sbjct: 865 LRYLAAEEKELGKAQRQELEDIRNELNRLKQEE 897


>gi|325185022|emb|CCA19513.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 646

 Score = 40.3 bits (92), Expect = 0.97,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 74/225 (32%), Gaps = 20/225 (8%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           K + L  +  Q   D L+ L +    E +       +    ++ +   + L     ++ +
Sbjct: 397 KSEVLALFVQQEASDALKYLEEHVTREANEEQVKDLRALLKQEYEDKREALTVHFKIEEE 456

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
             ++  + E      ++            L      +NE  +L   L     E K    +
Sbjct: 457 KMRQSVVSERK----MMEKARQAHNVRANLD-----DNETSRLRVELKHHQEENKKLTEQ 507

Query: 536 EIHQRLCERGFGELLKQ--LDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLS 592
            I   L +      +++  L+  ++           +  ++ +   Q++ + + + + L 
Sbjct: 508 AIV--LEQNIVDASMEKKVLEETIQKLRHDLEMEGEHRCELIETLSQSIKIAEDKEKNLE 565

Query: 593 RQKEEIEKQIAQVTAKGEA------EKTAILISILHEVHIQIHQI 631
            Q  ++ + +  +T   +                  E+  +++++
Sbjct: 566 AQITKLRELLESITLNADTRHQSLVATLDKRNEERKELQARLNEL 610


>gi|306842979|ref|ZP_07475613.1| ATP-dependent chaperone ClpB [Brucella sp. BO2]
 gi|306286907|gb|EFM58432.1| ATP-dependent chaperone ClpB [Brucella sp. BO2]
          Length = 874

 Score = 40.3 bits (92), Expect = 0.97,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 83/249 (33%), Gaps = 32/249 (12%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP--- 480
           Y     +RL+ +  +  T       +  +             +  S+L+K  L++     
Sbjct: 252 YRGEFEERLKAVLSEVQTAAGQIILFIDEMHTLVGAGKTDGAMDASNLLKPALARGELHC 311

Query: 481 ---SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPE 535
              +  E       +   A L  ++Q +        +   +   L   + +         
Sbjct: 312 VGATTLEEY--RKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDS 369

Query: 536 EIHQ-------RLCERGF-GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK- 586
            +          + +R    + +  +D       +   +    + ++ +   Q     + 
Sbjct: 370 ALVAAATLSNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPEELDEIDRRIMQLKIEREA 429

Query: 587 -----------RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                      R + + ++  ++E++ A++TAK +AEK  + ++   ++  Q+ +  +  
Sbjct: 430 LKVETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAA--DLKRQLEEARNAL 487

Query: 636 AMIEGFGKM 644
           A+ +  G+ 
Sbjct: 488 AIAQRNGEF 496



 Score = 38.3 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/210 (9%), Positives = 66/210 (31%), Gaps = 14/210 (6%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++KY+ + +   R ++           +  +++    K +   K  + ++AL+     
Sbjct: 318 EEYRKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAATL 377

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +    +L   + S   E        +  ++            
Sbjct: 378 SNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPEELDEIDRRIMQLKIEREALK------ 431

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                 +       E  + D+ +   +  A ++  +       ++++Q+ +        +
Sbjct: 432 VETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAADLKRQLEEARNALAIAQ 491

Query: 614 TAILISI--------LHEVHIQIHQIESQE 635
                          + ++  Q+   ESQE
Sbjct: 492 RNGEFQKAGELAYGTIPQLEKQLADAESQE 521


>gi|73958093|ref|XP_546980.2| PREDICTED: similar to myosin, heavy polypeptide 7, cardiac muscle,
            beta [Canis familiaris]
          Length = 1961

 Score = 40.3 bits (92), Expect = 0.97,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 40/123 (32%), Gaps = 3/123 (2%)

Query: 514  ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            EL ++ + +     E++            +R    L   L+ + +         +    D
Sbjct: 1574 ELAQVKADIDRRIHEKEEEFEATRKNH--QRAIESLQASLEAEAKGRAEALRLKKKMETD 1631

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-ILISILHEVHIQIHQIE 632
            + +   Q     K    L +  + +++QI  +  + + +      +   + +  +   + 
Sbjct: 1632 LNEMEIQLDHANKNNSELVKTLKRLQQQIKDLQVQMDEDARQHEELREQYNLQERRLSLL 1691

Query: 633  SQE 635
              E
Sbjct: 1692 QTE 1694


>gi|332221794|ref|XP_003260049.1| PREDICTED: kinesin-like protein KIF3A-like [Nomascus leucogenys]
          Length = 740

 Score = 40.3 bits (92), Expect = 0.98,   Method: Composition-based stats.
 Identities = 28/313 (8%), Positives = 87/313 (27%), Gaps = 16/313 (5%)

Query: 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
           + + ++C +              L   +     +    +    +D             +K
Sbjct: 327 NSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEELKK 386

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + E   +         E+            +   +   +            +   D+  
Sbjct: 387 KLEEGEEISGSDISGSEEDDDEEGEVGEDGEKRKKRRGSSSSSSSDSTCSVIEKPLDKF- 445

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
              Q    + S       +     ++K    +L      + K   +   RE  LL     
Sbjct: 446 LPNQAGKKKVSPDKMIEMQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQE 505

Query: 494 HPAILQEQYQELADIRYDNNELQKLW----SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           H ++L    ++L+ +       +K+       L     ++K      +      +   +L
Sbjct: 506 HQSLL----EKLSALE------KKVIVGGVDLLAKAEEQEKLLEESNMELEERRKRAEQL 555

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            ++L+ + ++         +   + +   ++   ++        +  +++++  +   +G
Sbjct: 556 RRELEEKEQERLDIEEKYTSLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQEHQR-EIEG 614

Query: 610 EAEKTAILISILH 622
             E    L   L 
Sbjct: 615 LLENIRQLSRELR 627


>gi|325116251|emb|CBZ51804.1| GF13052, related [Neospora caninum Liverpool]
          Length = 1235

 Score = 40.3 bits (92), Expect = 0.98,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 94/276 (34%), Gaps = 20/276 (7%)

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            E+   +        +   F   +E + L   LK     ++    +    Q   +RL+  
Sbjct: 488 REAKNKIKASLDLAYQKEQFRLMEENSRLGTDLKVAQQQLEAVTRQKEQLQTDAERLRGA 547

Query: 436 FQKYITEHSGYGR-----YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++       + +        +     + K  +  ++ S     +L K    +E +L   
Sbjct: 548 EEELRELQVDFLKMKTTLQLVQGRPCENAKVVADGVVSSLRAYLELKKATETQEQSLASL 607

Query: 491 LINHPAILQEQYQ--ELADIRYDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              + A+ Q+  +   L         E + L   + +   E +    ++   +L +    
Sbjct: 608 SQQNQALSQKASEVAALTREMLALESENRSLNDHIAALTGELRTMGDQQTALQLEKEAQE 667

Query: 548 ELL-KQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-----ALYKRFRLLSRQKE---EI 598
               +Q+DR  ++        +  +  V++  +Q        L +  +LL  +K+   E+
Sbjct: 668 GAHRQQIDRLQKELEARRREMDHQLEQVKERTRQETTKLTTELDRVKKLLEAEKKRTSEL 727

Query: 599 EKQIAQVTAKGE---AEKTAILISILHEVHIQIHQI 631
           + Q+   TA+     A+        L E + QI  +
Sbjct: 728 QSQMEDATAEASRRVADSEKRYQEQLRERNAQIEAM 763


>gi|313225548|emb|CBY07022.1| unnamed protein product [Oikopleura dioica]
          Length = 2355

 Score = 40.3 bits (92), Expect = 0.98,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 88/265 (33%), Gaps = 19/265 (7%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
             E    N    +   +      I  IK    +    + ++D  +   +          R 
Sbjct: 799  IEVIQCNIRAFQFLKDWEWMKIIFKIKPLISQAEEGKKMQDLEKNYDEVKKQLEKEKKRR 858

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
             +   +    +     L Q +  +  L      R   L+   I   + ++E  ++L D  
Sbjct: 859  AELEEQSVSLEQERNELNQKAEAQNSLLDDAEGRCEELIGNKIELDSKIRELQEKLEDEE 918

Query: 510  YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE----------------RGFGELLKQL 553
              NNEL      L  +  E K    +++   L +                     + + +
Sbjct: 919  EMNNELVAKKRKLEDESSELKK-DIDDLELTLAKIEKEKHATENKSKNVTEELASITESI 977

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEAE 612
             +  ++        +  + D++   ++ + L K    L +Q +++E  + A+  ++ + E
Sbjct: 978  HKLEKEKKALQEAHKQTLADLQSEEEKVVTLSKSKGKLEQQVDDLEIGLEAEKKSRMDLE 1037

Query: 613  KT-AILISILHEVHIQIHQIESQEA 636
            +    L   +     QI  +E+ +A
Sbjct: 1038 RAKRKLEGDIRLSQEQIMDLENDKA 1062


>gi|291387314|ref|XP_002710139.1| PREDICTED: kinesin family member 3a [Oryctolagus cuniculus]
          Length = 741

 Score = 40.3 bits (92), Expect = 0.98,   Method: Composition-based stats.
 Identities = 29/313 (9%), Positives = 86/313 (27%), Gaps = 16/313 (5%)

Query: 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
           + + ++C +              L   +     +    +    +D             +K
Sbjct: 328 NSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEELKK 387

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + E   +         E             +   +   +            +   D+  
Sbjct: 388 KLEEGEEISGSDISGSGEEDDEEGEVGEDGEKRKKRRGSSSSSSSDSTCSVIEKPLDKF- 446

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
              Q    + S       +     ++K    +L      + K   +   RE  LL     
Sbjct: 447 LPNQAGKKKVSPDKMVEMQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQE 506

Query: 494 HPAILQEQYQELADIRYDNNELQKLW----SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           H ++L    ++L+ +       +K+       L     ++K      +      +   +L
Sbjct: 507 HQSLL----EKLSALE------KKVIVGGVDLLAKAEEQEKLLEESNMELEERRKRAEQL 556

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            K+L+ + ++         +   + +   ++   ++        +  +++++  +   +G
Sbjct: 557 RKELEEKEQERLDIEEKYTSLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQEHQR-EIEG 615

Query: 610 EAEKTAILISILH 622
             E    L   L 
Sbjct: 616 LLENIRQLSRELR 628


>gi|281349880|gb|EFB25464.1| hypothetical protein PANDA_013554 [Ailuropoda melanoleuca]
          Length = 1872

 Score = 40.3 bits (92), Expect = 0.98,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 39/123 (31%), Gaps = 3/123 (2%)

Query: 514  ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            EL ++   +     E++            +R    L   L+ + +         +    D
Sbjct: 1551 ELAQVKDDIDRRIHEKEEEFEATRKNH--QRAIESLQASLEAEAKGRAEALRLKKKMETD 1608

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-ILISILHEVHIQIHQIE 632
            + +   Q     K    L +  + +++QI  +  + + +      +   + +  +   + 
Sbjct: 1609 LNEMEIQLDHANKNNSELVKTLKRLQQQIKDLQIQMDEDARQHEELREQYNLQERRLSLL 1668

Query: 633  SQE 635
              E
Sbjct: 1669 QTE 1671


>gi|295663424|ref|XP_002792265.1| anucleate primary sterigmata protein [Paracoccidioides brasiliensis
            Pb01]
 gi|226279440|gb|EEH35006.1| anucleate primary sterigmata protein [Paracoccidioides brasiliensis
            Pb01]
          Length = 1947

 Score = 40.3 bits (92), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 71/222 (31%), Gaps = 9/222 (4%)

Query: 420  LRYYYSQAIRD-RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +    Q I D +L Q         +G   + +  +R +D+          S       +
Sbjct: 933  EKERLYQEIEDLKLGQRRADGGRSVAGDSIFERSVSRAQDRSNSRTSDGARSRASDAEWE 992

Query: 479  KPSLREAALLLTL----INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
               ++   L   +    + + ++  +  + ++D+   +   Q        D    ++   
Sbjct: 993  SLEIKNGELRDHVSTLKLENQSLRAQLDECMSDLEALDRAYQADVEQAEEDLQTMQFERD 1052

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            + +  ++ +     L         +        +  I + ++   +     +  + L  +
Sbjct: 1053 QAL--QISDEREEALQDLKAEAQEEIDALGDELDQKIDECQRMEVELSNQQENLKALQAE 1110

Query: 595  KEEIEKQIAQVT--AKGEAEKTAILISILHEVHIQIHQIESQ 634
                 + I ++   A+   +K   +   L + + ++ Q+E  
Sbjct: 1111 MRSASEGIIRLEQDAQNNLQKYKSVQQELDDANRELEQMEKS 1152


>gi|194387796|dbj|BAG61311.1| unnamed protein product [Homo sapiens]
          Length = 746

 Score = 40.3 bits (92), Expect = 0.98,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 97/288 (33%), Gaps = 39/288 (13%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD---- 430
           + E     +     E +        E  +        +  ++DQ     Y   +      
Sbjct: 180 MSEKQLKQENNHLMEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 239

Query: 431 ----------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
                     +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 240 ELKEECEEKTKLGKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 299

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 300 EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 351

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
            +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 352 NKLKD--VQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 409

Query: 594 -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 410 NDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 454


>gi|289191386|ref|NP_001166028.1| Golgin subfamily A member 3 isoform 2 [Homo sapiens]
 gi|148744349|gb|AAI42659.1| GOLGA3 protein [Homo sapiens]
 gi|148921539|gb|AAI46676.1| GOLGA3 protein [Homo sapiens]
          Length = 1134

 Score = 40.3 bits (92), Expect = 0.98,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 46/120 (38%), Gaps = 8/120 (6%)

Query: 528 EQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           E      E    ++ E       +L ++L+    +        ++     +Q  Q  L L
Sbjct: 646 EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTL 705

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI-----LISILHEVHIQIHQIESQEAMIE 639
            +R + L   ++E    + Q+T   EA ++       L +   E+  ++ +++ + A  E
Sbjct: 706 LQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASRE 765


>gi|126660456|ref|ZP_01731565.1| DnaB helicase [Cyanothece sp. CCY0110]
 gi|126618269|gb|EAZ89029.1| DnaB helicase [Cyanothece sp. CCY0110]
          Length = 432

 Score = 40.3 bits (92), Expect = 0.98,   Method: Composition-based stats.
 Identities = 6/73 (8%), Positives = 22/73 (30%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
             +  +    E ++L  ++  P  +      L    +     Q+++      + + +   
Sbjct: 3   NNIPPQNIEAEESILGGILLDPNAISRVADMLPPEAFYVMAHQQIYQAALDLYHKDQPCD 62

Query: 534 PEEIHQRLCERGF 546
              +   L +   
Sbjct: 63  FMTVKTWLKDHKL 75


>gi|109049208|ref|XP_001114691.1| PREDICTED: zinc finger protein DZIP1L-like isoform 2 [Macaca
           mulatta]
          Length = 766

 Score = 40.3 bits (92), Expect = 0.98,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 77/221 (34%), Gaps = 14/221 (6%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            +R  +Q+             +         + +   +   +    + +  ++  L+EA 
Sbjct: 180 FLRGHIQRRHAGVAEGGKQKKQEQPVEEVLEELRAKLKWTQEELEAQREAERQRQLQEAE 239

Query: 487 LLLTLINHPAILQEQYQELADIRYD-----NNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           ++          ++++ +  +  +       ++L+KL+   F +   Q   L E++    
Sbjct: 240 IIH---QREVEAKKEFDKWKEQEWTKLYGEIDKLKKLFWDEFKNVANQNSTLEEKLRALQ 296

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ----KEE 597
                   L  L  +  +  L  A     + +  +   Q +   ++ + L  +    K+E
Sbjct: 297 SHSVMESNLGSLRDEESEEWLRQAQELQALRE--KTEIQKMEWKRKMKELHEEHVAEKKE 354

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           ++++  ++ A    ++         ++     Q++ Q  +I
Sbjct: 355 LQEENQRLQASLSQDQKKAAAQSQRQISALRAQLQEQARII 395


>gi|157114944|ref|XP_001652498.1| hypothetical protein AaeL_AAEL007011 [Aedes aegypti]
 gi|108877128|gb|EAT41353.1| conserved hypothetical protein [Aedes aegypti]
          Length = 1079

 Score = 40.3 bits (92), Expect = 0.98,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 64/204 (31%), Gaps = 27/204 (13%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           Q    +        + ++ +      SQ+           +    L E   +  L   P 
Sbjct: 786 QNRNRQSQTSPTSTQNDSYNALISNKSQQGKWKRRKGPAPALPMPLPERKAIKML---P- 841

Query: 497 ILQEQYQELADIRYDNNELQK---LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            L+E  QE+  I      L+K   +   +  +  E      +    +   +   +L+ QL
Sbjct: 842 -LKEIRQEMDIIETQQQGLEKQGVILEQMIRERCEGVDPEMDITGIQTNSKEVEDLIMQL 900

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA-------QVT 606
              V +                   Q  L   +R   L +++ ++E +I        +  
Sbjct: 901 FELVNEKNELFRR------------QAELMYLRRQHRLEQEQADLEYEIRLLMAQPERNK 948

Query: 607 AKGEAEKTAILISILHEVHIQIHQ 630
              + EK   LI+ L E+    ++
Sbjct: 949 TDSDKEKEEALIARLVEIVQMRNE 972


>gi|115947174|ref|NP_001070262.1| myosin-4 [Canis lupus familiaris]
 gi|122132086|sp|Q076A5|MYH4_CANFA RecName: Full=Myosin-4; AltName: Full=Myosin heavy chain 2b;
            Short=MyHC-2b; AltName: Full=Myosin heavy chain 4
 gi|83026764|gb|ABB96409.1| fast myosin heavy chain 2B [Canis lupus familiaris]
          Length = 1939

 Score = 40.3 bits (92), Expect = 0.98,   Method: Composition-based stats.
 Identities = 26/272 (9%), Positives = 84/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1565 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHLRVVESMQSTLDAEIRSRNDALRIKKKMEG 1624

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1625 DLNEM-EIQLNHANRQAAEAIRNLRNTQGILKDTQLHLDDAIRGQDDLKEQ------LAM 1677

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     ++Q + +EL  +       +K+    L       +    +       ++     
Sbjct: 1678 VERRANLMQAETEELRALLEQTERSRKVAEQELLDASERVQLLHTQNTSLINTKKKLETD 1737

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1738 ISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1797

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E++
Sbjct: 1798 QHRLDEAEQLALKGGKKQIQKLEARVRELENE 1829



 Score = 37.6 bits (85), Expect = 6.3,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 77/238 (32%), Gaps = 21/238 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
             + + +L   L+    H++    +    +  + RLQ   +  + +            + +
Sbjct: 1391 EEAKKKLAQRLQEAEEHVEAVNSKCSSLEKTKQRLQSEVEDLMIDVERSNAACAALDKKQ 1450

Query: 458  DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT-LINHPAILQEQYQELADIRYDNNELQ 516
                      +    + +   + S +EA  L T L       +E    L  ++ +N  LQ
Sbjct: 1451 RNFDKVLAEWKQKYEETQAELEASQKEARALSTELFKVKNAYEESLDHLETLKRENKNLQ 1510

Query: 517  KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            +  S L     E                     + +L++  +      +  +A + +   
Sbjct: 1511 QEISDLTEQIAEGGKH-----------------IHELEKVKKQIDQEKSELQAALEEAEG 1553

Query: 577  GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              +       R   +  +  +++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1554 SLEHEEGKILR---IQLELNQVKSEIDRKIAEKDEEIDQLKRNHLRVVESMQSTLDAE 1608


>gi|24584810|ref|NP_724048.1| cytoplasmic linker protein 190, isoform C [Drosophila melanogaster]
 gi|22946711|gb|AAN10987.1| cytoplasmic linker protein 190, isoform C [Drosophila melanogaster]
          Length = 1652

 Score = 40.3 bits (92), Expect = 0.98,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 80/242 (33%), Gaps = 20/242 (8%)

Query: 405  EIHLKNCINHIKDQKLR-YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
               ++     IKD  ++     + + ++LQ    +   + +      +   + ++ +G  
Sbjct: 1265 LQQVQEANGDIKDSLVKVEELVKVLEEKLQAATSQLDAQQATNKELQELLVKSQENEG-- 1322

Query: 464  QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLW 519
              L   SL   +  ++       L   L      L+E   +L +    +        ++ 
Sbjct: 1323 -NLQGESLAVTEKLQQLEQANGELKEALCQKENGLKELQGKLDESNTVLESQKKSHNEIQ 1381

Query: 520  SFLFSDFVEQKYFLPE--EIHQRLCE--RGFGELLKQLDR--QVRDAGLWSATTEANIVD 573
              L     +++    E  ++ ++L +  +   EL K L +   + + G    T  A    
Sbjct: 1382 DKLEQAQQKERTLQEETSKLAEQLSQLKQANEELQKSLQQKQLLLEKGNEFDTQLAEYQK 1441

Query: 574  VRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            V      A ++       L  +  E+E  + Q       +          E+  Q+  +E
Sbjct: 1442 VIDEMDDAASVKSALLEQLQNRVAELETALRQAN-----DAQKTAYLETKELRRQLESLE 1496

Query: 633  SQ 634
             +
Sbjct: 1497 LE 1498



 Score = 37.9 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 30/270 (11%), Positives = 89/270 (32%), Gaps = 14/270 (5%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            + +   E+    +L      +  E          +       +      +++ + +   S
Sbjct: 938  HAELQAERSSSSALHTKLSKFSDEIATGHKELTSKADAWSQEMLQKEKELQELRQQLQDS 997

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            Q  + +L+                  KN +    K  ++ L  S+  +  +       E 
Sbjct: 998  QDSQTKLKA----EGERKEKSFEESIKNLQEEVTKAKTENLELSTGTQTTIKDLQERLE- 1052

Query: 486  ALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             +    + H   +  E  Q++AD++    E  ++ +   S    +   + E +     E 
Sbjct: 1053 -ITNAELQHKEKMASEDAQKIADLK-TLVEAIQVANANISATNAELSTVLEVLQAEKSET 1110

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                 L +++  +    L    T     ++++ + Q     K+F  L  + ++ ++   +
Sbjct: 1111 NHIFELFEMEADMNSERLIEKVTGI-KEELKETHLQLDERQKKFEELEEKLKQAQQSEQK 1169

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +      +++      L E+   + +++  
Sbjct: 1170 L-----QQESQTSKEKLTEIQQSLQELQDS 1194


>gi|67537072|ref|XP_662310.1| hypothetical protein AN4706.2 [Aspergillus nidulans FGSC A4]
 gi|40741558|gb|EAA60748.1| hypothetical protein AN4706.2 [Aspergillus nidulans FGSC A4]
 gi|259482456|tpe|CBF76957.1| TPA: myosin II homolog (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 2404

 Score = 40.3 bits (92), Expect = 0.98,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 95/291 (32%), Gaps = 19/291 (6%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +        +     +  ++   + E E       +  + L   L++  +   ++ L   
Sbjct: 2016 KETSMEQTRQKYQREITTLNNELEMEREKVLNGRTE-ASRLREELEDLRSKWDNEVLNSS 2074

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                 + R++ + Q   T                       R +++S+      +    +
Sbjct: 2075 TWAKEKSRMEVMLQDVTTSRDEAVNAHNDAQARVVSLLSQVRSLRTSIDDVTAERDMLHK 2134

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDN----NELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            E  +L   +       E+ ++LA     +      + +    L +   +Q+      + +
Sbjct: 2135 EKKMLEARLTE---AGERLEDLAKGESPSMRNAASMDRELLELKAKLAQQEDLSLAAVGK 2191

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKR--------FRL 590
                      +++     R+A       +A +   +++   + + L  +         R 
Sbjct: 2192 MRRAEALATEMQKEVTAEREATAQLFKDKAALEKQLKEAQLRCVDLETKSYSSGSQDIRF 2251

Query: 591  LSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQEAMIE 639
            L ++ +E+E  + +  AK  +E+     +   + ++  QI + E   A +E
Sbjct: 2252 LHKRIKELETHLEEQEAKNNSEQRSLRNVDRTVKDLQSQIERREKMNAQLE 2302



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 84/262 (32%), Gaps = 12/262 (4%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
               +       + + +LE   +  +           + + +   ++ L      +     
Sbjct: 1043 EIIQRLEAERKEMQQKLEDLEQKLLEAQSSASETENHMRELGQEVKMLQSHLSLKERKLQ 1102

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                K  +               L + K   K  L E   +   I+  +     Y+E   
Sbjct: 1103 DLEAKLLKTDQDLDVKLAKTSKELDRSKKEVKDLLDENRTIRQQISDLSKTSTSYEE--M 1160

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            +R   +EL  L +       E+K    E+ +           L++L  QV          
Sbjct: 1161 LRRKESELTVLRNDAKKHAEEKKQLDVEKSNLSTRHDNMQNKLRELQAQVDAMVSEKIQL 1220

Query: 568  EANIVDVRQGYQQAL----ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA----ILIS 619
            E    DV++  Q  +       +  +LL +Q ++++ Q+ Q  A    E+ +     +++
Sbjct: 1221 EREAADVQKLLQAKISEDAEAGESRKLLEQQIQDLKNQLFQAQADLSRERQSRDDVQMLA 1280

Query: 620  I--LHEVHIQIHQIESQEAMIE 639
               L E+  +   +   +  IE
Sbjct: 1281 EHKLAELKDKFESLNEAKITIE 1302



 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 71/217 (32%), Gaps = 14/217 (6%)

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            L+   +K+  E           +   D      R +Q+ +      K    REAA +  L
Sbjct: 1171 LRNDAKKHAEEKKQLDVEKSNLSTRHDNMQNKLRELQAQVDAMVSEKIQLEREAADVQKL 1230

Query: 492  INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFGELL 550
            +   A + E  +     +    ++Q L + LF    +  +     +  Q L E    EL 
Sbjct: 1231 LQ--AKISEDAEAGESRKLLEQQIQDLKNQLFQAQADLSRERQSRDDVQMLAEHKLAELK 1288

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA------- 603
             + +                   +R+  +  +A  +  + L ++  ++  +         
Sbjct: 1289 DKFESLNEAKITIEKEMYIQQDSLRRATEARVAAEQSRKELQQELIKLRDRFTAAEDARL 1348

Query: 604  QVTAKGEAEKTAILISILHEVHIQI----HQIESQEA 636
            +  A+ E          L  +  ++    H++E  EA
Sbjct: 1349 RAEAEMEQALVKQTTQRLESIRKELDNTQHRLEEVEA 1385



 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 36/350 (10%), Positives = 103/350 (29%), Gaps = 16/350 (4%)

Query: 298  LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
              + L + ++ LL              +     A    +      I  +           
Sbjct: 1921 YFSKLEQAEITLLKASRAEQFAKAQAKETEDNCAQIMAERKEMEAIIDDLQRQTQSLEAR 1980

Query: 358  DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
              D      G    ++ +   L         + E++  +    R + +  +    N ++ 
Sbjct: 1981 MEDQAAELQGALQAKQRLQNELEDYRNQRAIDIEDKETSMEQTRQKYQREITTLNNELEM 2040

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            ++ +    +    RL++  +   ++          +   +++      L   +  + +  
Sbjct: 2041 EREKVLNGRTEASRLREELEDLRSK--WDNEVLNSSTWAKEKSRMEVMLQDVTTSRDEAV 2098

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF----L 533
               +  +A ++  L    ++        A+    + E + L + L       +       
Sbjct: 2099 NAHNDAQARVVSLLSQVRSLRTSIDDVTAERDMLHKEKKMLEARLTEAGERLEDLAKGES 2158

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-------LYK 586
            P   +    +R   EL  +L +Q   +               +  ++  A       L+K
Sbjct: 2159 PSMRNAASMDRELLELKAKLAQQEDLSLAAVGKMRRAEALATEMQKEVTAEREATAQLFK 2218

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---LISILHEVHIQIHQIES 633
                L +Q +E + +   +  K  +  +     L   + E+   + + E+
Sbjct: 2219 DKAALEKQLKEAQLRCVDLETKSYSSGSQDIRFLHKRIKELETHLEEQEA 2268


>gi|320591200|gb|EFX03639.1| dynactin, dynein-associated polypeptide ro-3 [Grosmannia clavigera
           kw1407]
          Length = 1345

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 73/221 (33%), Gaps = 30/221 (13%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP-SLRE 484
             ++D+++ L ++         R     AR    +   + L Q              L E
Sbjct: 429 SELQDQIKGLEEEVTELSGIKARQAATAARLEQSEAAVEDLRQQLDAAQAADDMMMELTE 488

Query: 485 AAL--------LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +        L  +I+    L+E   EL      N            +  E+  F    
Sbjct: 489 RNMSQAEQMEELKAVISDLESLKEINDELEINHVQNE----------RELQEEIDFKAAV 538

Query: 537 IHQRLCERGF-GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           I ++        E L+ ++  +          ++++ D+R  +       ++    SR  
Sbjct: 539 IQEQARRAAQQEEALEDMEYALSRFRQMVTGLQSDLEDMRASHAVTENESEQLSSKSRAM 598

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            ++  ++    AK          + +  + +++ ++E+QEA
Sbjct: 599 MDLNLKLQLSAAK----------AQVKTIDLELRRMEAQEA 629


>gi|300813693|ref|ZP_07094015.1| replicative DNA helicase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512235|gb|EFK39413.1| replicative DNA helicase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 453

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 7/67 (10%), Positives = 26/67 (38%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           ++    +  E + L  ++     +    + ++   + +   QK++S + S +   +    
Sbjct: 15  RIPPHNNDAETSALGAMLLSKEAITLSIEIISVEDFYSPAHQKIYSSILSIYNRNEACDV 74

Query: 535 EEIHQRL 541
             + + L
Sbjct: 75  VTLSEEL 81


>gi|224047406|ref|XP_002196364.1| PREDICTED: ribosome binding protein 1 homolog 180kDa [Taeniopygia
           guttata]
          Length = 975

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 74/218 (33%), Gaps = 10/218 (4%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             +++    L  +            +   +  +         Q  L   K   +   +E 
Sbjct: 762 DQLKEYTSLLETQLENHLETASSERQNYTKEVEALRQLLSESQEQLEAAKTETQKQSKEL 821

Query: 486 ALLLTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLC 542
           AL+   ++      ++ + +            +L + L       E++  L +++ + L 
Sbjct: 822 ALVRQQLSEAKTHVQEGEVVGLQAEPSEPAALELKTQLEQNETLAEKEQMLRQKLARELE 881

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           E       + L R ++         E      ++  Q      ++ + L++   +   ++
Sbjct: 882 EA------QSLARSLQAELEKLRLAEHAAASDKEEAQHLKERLEKEKKLTKDLGQAATKL 935

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            ++  K   ++ A    ++ ++  Q+ ++  +++  EG
Sbjct: 936 QEL-LKVSQDQVAKEREVVKKLKEQLQEMGKEDSSKEG 972


>gi|242765533|ref|XP_002340993.1| ftsj, putative [Talaromyces stipitatus ATCC 10500]
 gi|218724189|gb|EED23606.1| ftsj, putative [Talaromyces stipitatus ATCC 10500]
          Length = 814

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 65/210 (30%), Gaps = 36/210 (17%)

Query: 466 LMQSSLVKGKLSKKPSLREAAL--LLTLINHPA--------ILQEQYQELADIRYDNNEL 515
           L +   +  K ++     E +L  L +LI +          I+ E   EL  ++ + +E 
Sbjct: 11  LAREYELSLKTAQLEIAYERSLAQLDSLIAYEETRISRVDYIIFEADHELLRMKCEQSEY 70

Query: 516 Q---------KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
                      L   L     +        +      +     L  + R+V D    SA 
Sbjct: 71  DIDQLLQVETALKQQLLRAQEDLANLQLSTLADTRAIQDLKSDLTSMKRKVSDYEKMSAD 130

Query: 567 TEANIVDVRQGYQQALALYKRFR----------LLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                 ++ Q  Q+   L  + +           L RQ   +E Q+ +     E  ++  
Sbjct: 131 KLNLTKEIAQMKQEFERLQHQNKSHQNLIAEKSALERQLNSLEIQLKEERRAFERNRSIE 190

Query: 617 -------LISILHEVHIQIHQIESQEAMIE 639
                      L  +  ++ +   + + +E
Sbjct: 191 DKKQNSEAQQQLKRLQAELQKETDERSRLE 220


>gi|242803064|ref|XP_002484098.1| eukaryotic translation initiation factor 3 subunit EifCa, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218717443|gb|EED16864.1| eukaryotic translation initiation factor 3 subunit EifCa, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 1051

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 46/126 (36%), Gaps = 9/126 (7%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG- 577
              L  +  E++    ++   R+ ++   + L++L              E +   +R   
Sbjct: 645 KQRLLDEHREREKKRLKDEQDRIRKQELKKQLEELSGVKGIDINEIDPEELDSNRLRAMK 704

Query: 578 ----YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                ++   L  R R+ +++ + +E+   +   K   E          EV+    +++ 
Sbjct: 705 LAQLEKEKNELNDRIRITAKRIDHLERAFRREELKHIPEDYERQKQHDMEVY----ELQK 760

Query: 634 QEAMIE 639
           +E + E
Sbjct: 761 EETLKE 766


>gi|160934420|ref|ZP_02081807.1| hypothetical protein CLOLEP_03293 [Clostridium leptum DSM 753]
 gi|156867093|gb|EDO60465.1| hypothetical protein CLOLEP_03293 [Clostridium leptum DSM 753]
          Length = 1190

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 80/253 (31%), Gaps = 17/253 (6%)

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQ-AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
            + E         +K  +  Y+  Q  +      L        S      +  A  ++++
Sbjct: 681 EKYEKEAAVLQEKLKKAQEEYHQLQAEVSKNEAALLGAQGELSSAQEERIRLEAEQKNRR 740

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
              + L ++         +  +R   L   L     + +E   E++ I            
Sbjct: 741 AERENLQRAVEDLQNERDQSQIRLKELRAALEASRKVQEEAEHEISVIE----------E 790

Query: 521 FLFSDFVEQKYFL--PEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            L      Q  F    E I QR+ E   G   L K       +     +  +     + Q
Sbjct: 791 KLSQITGSQAEFSEKREGISQRMQELRMGLLSLEKDKSSLEAEIASMESRRQGEAGRITQ 850

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQ 634
             ++   L ++   L ++  +   Q  ++   A G  +    L     E+  Q  ++ ++
Sbjct: 851 LEEEIQELKQKNGELQKEIAQCLTQAQKLKEQAAGVEKSIEALNQERLELEKQSARLRAE 910

Query: 635 EAMIEGFGKMSGR 647
           E   +   +++GR
Sbjct: 911 EREKQSQRELTGR 923



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 75/206 (36%), Gaps = 6/206 (2%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                      R  +     ++     ++L ++     +L  + S  EAALL       +
Sbjct: 665 GSLARNSGLLSRVGEIEKYEKEAAVLQEKLKKAQEEYHQLQAEVSKNEAALLGAQGELSS 724

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVE--QKYFLPEEIHQRLC-ERGFGELLKQL 553
             +E+ +  A+ +    E + L   +     E  Q     +E+   L   R   E  +  
Sbjct: 725 AQEERIRLEAEQKNRRAERENLQRAVEDLQNERDQSQIRLKELRAALEASRKVQEEAEHE 784

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIA--QVTAKGE 610
              + +       ++A   + R+G  Q +  L      L + K  +E +IA  +   +GE
Sbjct: 785 ISVIEEKLSQITGSQAEFSEKREGISQRMQELRMGLLSLEKDKSSLEAEIASMESRRQGE 844

Query: 611 AEKTAILISILHEVHIQIHQIESQEA 636
           A +   L   + E+  +  +++ + A
Sbjct: 845 AGRITQLEEEIQELKQKNGELQKEIA 870


>gi|149025380|gb|EDL81747.1| golgi autoantigen, golgin subfamily a, 5, isoform CRA_b [Rattus
           norvegicus]
          Length = 612

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 36/352 (10%), Positives = 95/352 (26%), Gaps = 25/352 (7%)

Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349
            V++  +    +++     L  +           +        ++ +          RV 
Sbjct: 206 SVEHSSAPSDGSMSHELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARVRVE 265

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
              +   +          +       V +      + K   +            LE    
Sbjct: 266 KWNVDNSKSDRITRELRAQVDDLTEAVAAKDSQLAVLKVRLQEADQVLSSRTEALEALQS 325

Query: 410 NCINHIKD----QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
                ++D      L+    Q +++RL +       E   Y +   + A          R
Sbjct: 326 EKSRIMQDHNEGSSLQNQALQTLQERLHEADATLKREQESYKQMQSEFA---------TR 376

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
           L +  + +  L++  +L E         +    ++       ++   + L+     L   
Sbjct: 377 LNKMEVERQNLAEAVTLAER-------KYSEERKKVDDLQQQVKLHRSSLESAKQELVDY 429

Query: 526 FVEQKYF--LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
             +        E++   L E    E L        +        E    ++++   Q   
Sbjct: 430 KQKATRILQSKEKLINSLKEGSSFEGLDSSTASSMELEELRHERELQKEEIQKLMGQIHQ 489

Query: 584 LYKRFRLLS-RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           L    + +  +Q  E E    Q+    +            E+  ++ +++ +
Sbjct: 490 LRSELQDMEAQQVSEAESAREQLQDLQDQIAKQRASK--QELETELDRMKQE 539


>gi|881515|gb|AAA70412.1| ORF1; Method: conceptual translation supplied by author
           [Rhodobacter capsulatus SB 1003]
          Length = 166

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 5/107 (4%)

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            ++  L  HP ++ E   ++  +R  +  L  L   +      Q       + + L    
Sbjct: 1   MIVAILCAHPVLVAEFESQIERLRLSDPGLGALRDTML----MQADRPAGALAEALAREN 56

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
            G +L+ L R              +    R    + LA  +  R + 
Sbjct: 57  PG-VLETLMRHPHVRSAPPVLRRDDSDFARMCLAEELAKLQATRAVR 102


>gi|22003856|ref|NP_084290.1| protein Hook homolog 1 [Mus musculus]
 gi|41688582|sp|Q8BIL5|HOOK1_MOUSE RecName: Full=Protein Hook homolog 1; Short=mHK1
 gi|21667444|gb|AAM74055.1|AF487912_1 Hook1 protein [Mus musculus]
 gi|38197327|gb|AAH61688.1| Hook homolog 1 (Drosophila) [Mus musculus]
 gi|123857721|emb|CAM26960.1| hook homolog 1 (Drosophila) [Mus musculus]
 gi|148698972|gb|EDL30919.1| hook homolog 1 (Drosophila), isoform CRA_a [Mus musculus]
          Length = 728

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 34/343 (9%), Positives = 99/343 (28%), Gaps = 28/343 (8%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           DG               +   +   +     L   +D         +    +    +   
Sbjct: 233 DGSFDDPNTMVAKKYFHVQLQLEQLQEENYRLEAAKDDYRVHCEELEKQLIEFQHRN--- 289

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
            ++    E      +  D             + ++  + +      +R +++ L +  + 
Sbjct: 290 DELTSLAEETRALKDEIDVLRATSDKANKLESTVEVYRQKLQDLNDLRKQVKSLQETNMM 349

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPAI 497
                    ++  +    +   +   +            S R   L   +      H  +
Sbjct: 350 YMHNTVSLEEELKKANAARAQLETYKRQVQDLHTKLSSESKRADTLAFEMKRLEEKHETL 409

Query: 498 LQEQYQELADIRYDNNELQKLW-----SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           L+E+ + +          ++L          +          E +   +    + E+  +
Sbjct: 410 LKEKERLIEQRDTLKETNEELRCSKAQQDHLNQADASATKSYENLAAEIMPVEYREVFIR 469

Query: 553 LDRQVRDAGLWSA-TTEANIVDVRQGYQQALA-----------LYKRFRLLSRQKEEIEK 600
           L  + +   L    T    I  +++  +Q                +R   L +Q E+++K
Sbjct: 470 LQHENKMLRLQQEGTENERIEQLQEQLEQKHRKMNELETEQRLSKERIGELQQQIEDLQK 529

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQEAMIE 639
            + +  +K E E ++ L   L     ++     +++ ++ +IE
Sbjct: 530 SLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQELIE 572


>gi|87309000|ref|ZP_01091138.1| hypothetical protein DSM3645_19623 [Blastopirellula marina DSM
           3645]
 gi|87288343|gb|EAQ80239.1| hypothetical protein DSM3645_19623 [Blastopirellula marina DSM
           3645]
          Length = 1206

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 85/262 (32%), Gaps = 42/262 (16%)

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           N I D   +     A+++R +QL +  +          K++    +   P++R  Q+  +
Sbjct: 606 NGIDDADTQQQ-LAALKERTEQLAKGELASIENTLGEAKRDIELEENSSPAERAAQAVEM 664

Query: 473 KGKLSKKPSL---REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           +GKLS+        E  L   +         Q+        D   L++    L      +
Sbjct: 665 RGKLSETVEKQRDAERQLEEMI-----AGLSQWDTYRRFALDLRGLRERQQELQERTQAE 719

Query: 530 KYFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
           +     +  + L                +L  QLDR             A+     +  +
Sbjct: 720 QAATIGKTPESLDPAERSERKRLATDQADLANQLDRIQSRMREMEQQLAASEPAAAETLK 779

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQ--------VTAKGEAE--------------KTAIL 617
            A+   +R   +S++      Q+AQ           + + +              +   L
Sbjct: 780 DAIE-QQRQESISQKMRSAGAQLAQNQLGEAATAQTEVDQQLGEMLDILNNRRENRLKQL 838

Query: 618 ISILHEVHIQIHQIESQEAMIE 639
              L E   ++ ++++++  +E
Sbjct: 839 ADKLKEAEQELRELKAKQKGLE 860



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/203 (9%), Positives = 57/203 (28%), Gaps = 16/203 (7%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    + + D+L++  Q+     +       K  +        +R  Q   +  +     
Sbjct: 831  RENRLKQLADKLKEAEQELRELKAKQKGLEDKLKQAAKNPDAGERGRQLEQLAAEAENLQ 890

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            +  E             L  + + L            +           +    ++    
Sbjct: 891  AEAER------------LARKLERLRAE----KAADAVRDAAQKLQKAAEQADNDDAAAA 934

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            L E+   +   +  +Q           +      ++  Q   ++  + + + R+ E + +
Sbjct: 935  LEEQDQAQRDLEQAQQELAEKQKQVEKDLAEEQSQRLRQSIESMVTQQKTVVREIERLRE 994

Query: 601  QIAQVTAKGEAEKTAILISILHE 623
             +          ++  LIS L +
Sbjct: 995  IVGDRAPTEAQTQSIRLISQLQK 1017


>gi|326917033|ref|XP_003204809.1| PREDICTED: desmoplakin-like [Meleagris gallopavo]
          Length = 2829

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 85/298 (28%), Gaps = 27/298 (9%)

Query: 358  DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH--- 414
            D +S      K   + L    + +  +  K  +        +          +       
Sbjct: 1019 DSNSETNNKHKFLEQNLQKYQMDISQLKAKLMSLEEMKRQAEMDGNSAKQNLDKCYAQIK 1078

Query: 415  -IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             + D+  R  Y      R ++L +    +        +K  ++       Q+L    ++K
Sbjct: 1079 DLNDRITRLTYETEDEKRKRKLLEDRYEQQKNDYDQLQKTRQNEKDSLGWQKLESEKVIK 1138

Query: 474  GKLSKKPSLREAALLLTLINHP------------AILQEQYQELADIRYDNNELQKLWSF 521
             K  +         L  L+                +  +  +E+++++        +   
Sbjct: 1139 EKEYEIER------LRVLLQDEGTRKREYENELAKVRNQFSEEMSNLKNKYETEINIKKT 1192

Query: 522  LFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
                   QK    + +  ++    R   +L  ++ R        +        D  Q   
Sbjct: 1193 TIQQIAAQKDDDAKGLRAQVDRLSRENRDLKDEIVRLNDAILQTTDQRRRAEEDALQQKA 1252

Query: 580  QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---LISILHEVHIQIHQIESQ 634
             +  + ++   L  + ++I +   +  ++ +         +     E+     Q++ +
Sbjct: 1253 CSSEVSQQKHQLELELKQIIQLRGEDNSRYKQALEEAAATIQDKTKELERLKLQLQEE 1310



 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 98/280 (35%), Gaps = 23/280 (8%)

Query: 369  TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
                KL ++   L  +    E   +     D+ +         +  I+  KL     +  
Sbjct: 1496 ETINKLRIQEQDLARLKIDYERVLQEKKGRDQESAKFQSTVKDL-QIQKHKLEEELCRQN 1554

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            ++ +++  ++   E    G       +       +Q++ + S+VK +        +  +L
Sbjct: 1555 KNVMEETARRKKLEEEVEGMRRSLREQSVKITNLTQQIEEVSIVKKRNEDDLR-HQREVL 1613

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFG 547
                     ++E+ + + +IR   ++++ L   L  +  + ++  L  E  Q+  E    
Sbjct: 1614 ------DGHVREKQRYMEEIRKYTSDIETLRRQLVQEQEQLKQAHLRNEHLQKTSEEKSK 1667

Query: 548  EL------LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             L      +++L     +        E  + +VR  Y     +       +    E++ Q
Sbjct: 1668 NLNECKIEIERLQSLTENLTKEHLLLEEELRNVRLEYDDLRMVRSEVDEKNSAIAELKNQ 1727

Query: 602  IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
            +          +T  L  +++++  +  ++  +   IE F
Sbjct: 1728 LQTSNK-----QTLELQGLINDLQKEREKLRQE---IEKF 1759


>gi|326436230|gb|EGD81800.1| hypothetical protein PTSG_02512 [Salpingoeca sp. ATCC 50818]
          Length = 2322

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 52/163 (31%), Gaps = 28/163 (17%)

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            +E  +++  +    +  + L   L     +++    + +   L      + +++L+R+  
Sbjct: 1298 RELMEKVEKLNLLEDSNKLLREQLNESDQKRQESEKKLLQAELRLNPLQKRVQELEREAV 1357

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFR-------------------LLSRQKEEIE 599
                     E +    ++  Q  L +Y                       LL ++  +++
Sbjct: 1358 VLREEKRNAEKSEQTCQRRIQAILNMYNSVDPEQIKSLQEKETMWESTRALLEQEIRDLK 1417

Query: 600  KQIAQVTAKGEAE---------KTAILISILHEVHIQIHQIES 633
             +  +   + +AE         K       L  V  +I Q + 
Sbjct: 1418 AEQTKKEEEHKAETAAIQEKYDKLLEQFRRLQSVSRRIRQEQQ 1460


>gi|325970907|ref|YP_004247098.1| hypothetical protein SpiBuddy_1079 [Spirochaeta sp. Buddy]
 gi|324026145|gb|ADY12904.1| hypothetical protein SpiBuddy_1079 [Spirochaeta sp. Buddy]
          Length = 332

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 76/217 (35%), Gaps = 8/217 (3%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y   +   +++  + ++ +     +     A     +    ++   +          
Sbjct: 79  RLSYIGYLSQVVRKRSRYFMAQQQIQRKKELLVAESDYYQQQVSQMPLQTAEHATYCSFS 138

Query: 481 SLREAALLLTLINHPAILQEQYQELAD-IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           S+ +  +       P +  +  Q  ++ I   N +L+KL + L      +++ +   +  
Sbjct: 139 SVPQQEIQAL----PDLFSQLMQRCSNPINPTNAKLRKLQAVLQLPVNRKRFLIMLTLSP 194

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L      E L  L             T  +++  +Q  ++            R+  EIE
Sbjct: 195 HLAGEYLLEDLASLLEVEAPLLSQYLNTANSVLAHKQACKEEFETISHRHF--RRLLEIE 252

Query: 600 KQIAQVTAKGEAEKTAILISILHEV-HIQIHQIESQE 635
            ++ +   +G+  K   L+S    V  I+IHQI + E
Sbjct: 253 SELLREDDEGKRRKLEELLSWTRRVYKIKIHQIRTME 289


>gi|319642244|ref|ZP_07996903.1| hypothetical protein HMPREF9011_02503 [Bacteroides sp. 3_1_40A]
 gi|317386100|gb|EFV67020.1| hypothetical protein HMPREF9011_02503 [Bacteroides sp. 3_1_40A]
          Length = 1370

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 71/222 (31%), Gaps = 23/222 (10%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           Q+ I +     R   K    +    P+   ++    + +        EA +   L+N   
Sbjct: 758 QQEIEKKQWEERNKGKKNNEKGVFKPTTTSIEQLPQEQRDLLSNMYSEAQV-KNLMNEEK 816

Query: 497 ILQEQYQELAD--IRYDNNEL---QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           IL+E+Y  L      Y + E    ++    +      ++         +  E+   EL  
Sbjct: 817 ILKEKYDALIAQLDDYKSREYTITKEWDEKIAQAAGNEELVDK---LTKGKEKALNELNA 873

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS--------RQKEEIEKQIA 603
           Q+  Q  +        +   +   +   Q +    +   L          + ++ E +I 
Sbjct: 874 QMLMQSDEWVKLFGDLDNLTISEIENLIQIIKSKAKDLKLDPINLDKVLEKLKDAENEIK 933

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
                        L++ + E   +  + + + ++ E FG  S
Sbjct: 934 ------SRNPFRSLVTHIKEYQKEADKTKKKASLKEIFGDTS 969


>gi|311270587|ref|XP_001929016.2| PREDICTED: CAP-Gly domain-containing linker protein 1 [Sus scrofa]
          Length = 1426

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 46/393 (11%), Positives = 122/393 (31%), Gaps = 22/393 (5%)

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
            AL    + + K+            +   DV++L ++ ++  ++S   A+ E ++     
Sbjct: 577 KALQAATEKLSKENESLKGKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKG 636

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC--YGKTA 370
           +        +      +        +       +          E   + +      K  
Sbjct: 637 VGTETAELAELKTQIEKMRLDYQHEIESLQNKQDSERSAHTKELEALRAKLMKVIKEKEN 696

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR- 429
             + I   L  V+     E E+      +   +++          +  K+   ++  ++ 
Sbjct: 697 SLEAIKSKLDRVEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKCKEQTKVIDNFTSQLKA 756

Query: 430 --DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             ++L  L         G         +    +   + L      +   +   + +E   
Sbjct: 757 AEEKLSDLDALRKASSEGKSEIENLRQQLEAAEKQIKNLEIEKNAESGKASSIT-KELQG 815

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              ++N+        + L+++      L+K    L   F +              +R   
Sbjct: 816 KELMLNN------LQENLSEVSQVKEALEKELQILKEKFADASEEAVSV------QRSMQ 863

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E + QL ++       S+  E    ++     +     +R   L + KE++E  IA++  
Sbjct: 864 ETVNQLHQKEEQFNALSSELEKLRENLTDMEAKFRERDEREEQLIKAKEKLENDIAEIMK 923

Query: 608 -KGEAEKTAILIS---ILHEVHIQIHQIESQEA 636
             G+       ++    L E +++  Q++  +A
Sbjct: 924 MSGDHSSQLTKMNDELRLKERNVEELQLKLTKA 956


>gi|309789553|ref|ZP_07684134.1| ATP-dependent chaperone ClpB [Oscillochloris trichoides DG6]
 gi|308228289|gb|EFO81936.1| ATP-dependent chaperone ClpB [Oscillochloris trichoides DG6]
          Length = 859

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 84/273 (30%), Gaps = 40/273 (14%)

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
            R E E  LK  +  I+D+     +   +   +     +   +     +           
Sbjct: 254 YRGEFEERLKAVLKEIQDRDDVILFIDELHTMVGAGAAEGAMDAGNMLKPMLARGELHMV 313

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI---------LQEQYQELADIRY 510
              +    +  + K          E      +++ P++         L+E+Y+    +  
Sbjct: 314 GATTLDEYRKHIEKDAA------LERRFQPIMVDPPSVEDTISILRGLKERYEAHHAVAI 367

Query: 511 DNNELQKLWSFLFSDFVEQKYF--------LPEEIHQRLCERGFGELLKQLDRQV----R 558
            ++ +    + L   ++  ++               +R+      +++  L+R V     
Sbjct: 368 TDSAIVA-AATLSDRYISDRFLPDKAIDLIDESAARRRMENTSSPQVIDDLNRLVVQRET 426

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFR-----------LLSRQKEEIEKQIAQVTA 607
           +  +     +A   +  +  +Q LA     R            L  Q +++++QI     
Sbjct: 427 EREMLKREKDAASKERLEKLEQELANLHEQRSALEAQRQSESALLEQIKQLKEQINTTRF 486

Query: 608 KGEAEKTAILISILHEVH-IQIHQIESQEAMIE 639
             E  +     +    +    + ++E   A +E
Sbjct: 487 AIEQAQREYDYNRAARLQYDDLARLERDLANVE 519


>gi|297702222|ref|XP_002828085.1| PREDICTED: ralA-binding protein 1-like isoform 1 [Pongo abelii]
 gi|297702224|ref|XP_002828086.1| PREDICTED: ralA-binding protein 1-like isoform 2 [Pongo abelii]
 gi|297702226|ref|XP_002828087.1| PREDICTED: ralA-binding protein 1-like isoform 3 [Pongo abelii]
          Length = 655

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 75/256 (29%), Gaps = 35/256 (13%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-----QAIRDRLQQLFQKYI---- 440
            +                L      IK++  R  +      + ++  ++ L ++      
Sbjct: 373 LKQVMKPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGIKDLSKEERLWEV 432

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                  +   + A+ ++ +    + + S   +    ++ +  E  + + L     IL E
Sbjct: 433 QRILTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVINILLAQENEILTE 492

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           Q + LA  ++       L   + S                  +     L  ++       
Sbjct: 493 QEELLAMEQF-------LRRQIAS-----------------EKEEIERLRAEIAEIQSRQ 528

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILI 618
               + TE    +     +    L      L RQ EE+E +   +      E E    L 
Sbjct: 529 QHGRSETEEYSSESESESEDEEELQIILEDLQRQNEELEIKNNHLNQAIHEEREAIIELR 588

Query: 619 SILHEVHIQIHQIESQ 634
             L  + +Q  + E Q
Sbjct: 589 VQLRLLQMQRAKAEQQ 604


>gi|297493303|ref|XP_002700291.1| PREDICTED: dystrophin Dp427p1-like, partial [Bos taurus]
 gi|296470586|gb|DAA12701.1| dystrophin Dp427p1-like [Bos taurus]
          Length = 2663

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 54/153 (35%), Gaps = 23/153 (15%)

Query: 505  LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAG 561
            L ++   N+++QKL   L ++  +      E+ ++ + E       ELL++ D   +   
Sbjct: 1669 LKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMSEDNEGTVKELLQRGDNLQQRIT 1728

Query: 562  LWSATTEANIVD--------------------VRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                  E  I                        +   Q     ++   L +  ++IEK+
Sbjct: 1729 DERKREEIKIKQQLLQTKHNALKDLRSQRRKKALEISHQWYQYKRQADDLLKCLDDIEKK 1788

Query: 602  IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +A +    +  K   +   L +   +++ +  Q
Sbjct: 1789 LASLPEPRDERKIKEIDRELQKKKEELNAVHRQ 1821


>gi|288800933|ref|ZP_06406390.1| toprim domain protein [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332394|gb|EFC70875.1| toprim domain protein [Prevotella sp. oral taxon 299 str. F0039]
          Length = 687

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 77/251 (30%), Gaps = 5/251 (1%)

Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173
           + D ++++E         L     K+  +      +      + +    P      +   
Sbjct: 82  KKDFVKVLETIIR--DLQLNIYIGKQERFEQRAMIMKPPKPTISQPADQPKLMEEKKWFK 139

Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233
             +     + ++       D++       ++   +   S++G+    G     +     Y
Sbjct: 140 LIEQSFGIEEMKYWQQYGIDSNTLQRFHVKSLARYESISNQGKPFTLGST--HEEPMFAY 197

Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293
                  ++     L   +G               +    I +  G  DVLSL   G   
Sbjct: 198 NMGAFVKVYRPKSKLRFLYGGEKVTDYVFGFQQLPSKGDIIFITGGEKDVLSLSAHGFNA 257

Query: 294 VVSSL-GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
           +  +     + E  +  L      I++ +D D+ G+R A +  + ++ + +    +    
Sbjct: 258 ICFNSETAEIPENIIEGLQLRFRHIIILYDTDETGIREAKQQTNALIQYKVLSLTLPLQG 317

Query: 353 LSRGEDPDSFI 363
           +   +D   F 
Sbjct: 318 IKSEKDISDFF 328


>gi|261337190|ref|NP_001040552.2| eukaryotic translation initiation factor 3 subunit A [Rattus
           norvegicus]
 gi|229488252|sp|Q1JU68|EIF3A_RAT RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 subunit 10; AltName:
           Full=eIF-3-theta
          Length = 1354

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYIKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|149019058|gb|EDL77699.1| rCG25966, isoform CRA_a [Rattus norvegicus]
          Length = 1212

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 99/364 (27%), Gaps = 22/364 (6%)

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           +   DV+ + +              +    ++L  L    +L  +             +L
Sbjct: 91  QAREDVIHMLRTEKTKPEVLEAHYGSAEPEKVLRVLHRDAILAQEKSIGEDVYEKPISEL 150

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRETENR 393
                        +L                   E    +    +    D     E E  
Sbjct: 151 DRLEEKQKETYRRMLEQLLL--AEKCHRRTVYELENEKHKHTDYMNKSDDFTNLLEQERE 208

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                 E+ +     K   N  +  KLR    +     L  + ++ +       +  K  
Sbjct: 209 RLKKLLEQEKAYQARKEKENAKRLNKLRDELVKLKSFALMLVDERQMHIEQLGLQSQKVQ 268

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQELADIRYD 511
              +  +   ++L   +    +  +K    E         H A    QE  +  A +   
Sbjct: 269 DLTQKLREEEEKLKAVTYKSKEDRQKLLKLEVDF-----EHKASRFSQEHEEMNAKLANQ 323

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
            +  ++L   L       +         +  E    EL +++ +         A  E+  
Sbjct: 324 ESHNRQLRLKLVGLSQRIEELEETNKSLQKAEEELQELREKIAKGECGNSSLMAEVESLR 383

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             V +   +   + K       Q  E++K++ +         +  L   + ++  ++ ++
Sbjct: 384 KRVLEMEGKDEEITKT----EAQCRELKKKLQEEEHH-----SKELRLEVEKLQKRMSEL 434

Query: 632 ESQE 635
           E  E
Sbjct: 435 EKLE 438


>gi|118086422|ref|XP_418957.2| PREDICTED: similar to desmoplakin isoform II isoform 2 [Gallus
            gallus]
          Length = 2861

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 85/298 (28%), Gaps = 27/298 (9%)

Query: 358  DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH--- 414
            D +S      K   + L    + +  +  K  +        +          +       
Sbjct: 1051 DSNSETNNKHKFLEQNLQKYQMDISQLKAKLMSLEEMKRQAEMDGNSAKQNLDKCYAQIK 1110

Query: 415  -IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             + D+  R  Y      R ++L +    +        +K  ++       Q+L    ++K
Sbjct: 1111 DLNDRITRLTYETEDEKRKRKLLEDRYEQQKNDYDQLQKTRQNEKDSLGWQKLESEKVIK 1170

Query: 474  GKLSKKPSLREAALLLTLINHP------------AILQEQYQELADIRYDNNELQKLWSF 521
             K  +         L  L+                +  +  +E+++++        +   
Sbjct: 1171 EKEYEIER------LRVLLQDEGTRKREYENELAKVRNQFSEEMSNLKNKYETEINIKKT 1224

Query: 522  LFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
                   QK    + +  ++    R   +L  ++ R        +        D  Q   
Sbjct: 1225 TIQQIAAQKDDDAKGLRAQVDRLSRENRDLKDEIVRLNDAILQTTDQRRRAEEDALQQKA 1284

Query: 580  QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---LISILHEVHIQIHQIESQ 634
             +  + ++   L  + ++I +   +  ++ +         +     E+     Q++ +
Sbjct: 1285 CSSEVSQQKHQLELELKQIIQLRGEDNSRYKQALEEAAATIQDKTKELERLKLQLQEE 1342



 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 39/331 (11%), Positives = 102/331 (30%), Gaps = 25/331 (7%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D     ++   K I+ +   L         L               K         +   
Sbjct: 1475 DDASKTIKERNKEIERLRKLLDVETSQRKELEDENNQLKRVQFDLQKANTSATETINKLR 1534

Query: 382  VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY-YSQAIRDRLQQLFQKYI 440
            +        +        E+   +       + IKD +++ +   + +  + + + ++  
Sbjct: 1535 IQEQDLARLKIDYERVLQEKKGRDQESAKLQSTIKDLQIQKHKLEEELCRQNKNVMEETA 1594

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSL---VKGKLSKKPSLREAALLLTLINHPAI 497
                            R+Q      L Q      +  K ++     +  +L         
Sbjct: 1595 RRKKLDEEVEGMRRSLREQSVKITNLTQQIEEVSIVKKRNEDDLRHQREVL------DGH 1648

Query: 498  LQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFGEL------L 550
            ++E+ + + +IR   ++L+ L   L  +  + ++  L  E  Q+  E     L      +
Sbjct: 1649 VREKQRYMEEIRKYTSDLETLRRQLVQEQEQLKQAHLRNEHLQKTSEEKSKNLNECKIEI 1708

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L     +        E  + +VR  Y     +       +    E++ Q+   +    
Sbjct: 1709 ERLQSLTENLTKEHLLLEEELRNVRLEYDDLKMVRSEVDEKNSAIAELKNQLQTSSK--- 1765

Query: 611  AEKTAILISILHEVHIQIHQIESQEAMIEGF 641
              +T  L  +++++  +  ++  +   IE F
Sbjct: 1766 --QTLELQGLINDLQKEREKLRQE---IEKF 1791


>gi|24580631|ref|NP_608520.1| CG4213 [Drosophila melanogaster]
 gi|10727411|gb|AAF51504.2| CG4213 [Drosophila melanogaster]
          Length = 1253

 Score = 40.3 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 61/237 (25%), Gaps = 19/237 (8%)

Query: 391  ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
            E  +    +    LE   +  ++ I+    R +Y +   DR+++   +  +  S      
Sbjct: 871  EEYTRKRSERLGRLEEESRQLMSRIRRTADRGHYLKKSLDRIRRAPSREASFESNTEEEA 930

Query: 451  KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
               ++       S    +      + + +    E              ++   +L     
Sbjct: 931  IPASKSESCPATSPLTAEEEEYTSRRAARIQRMERE-----------SRQLISQLTRNSE 979

Query: 511  DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
                       L   +        +     + +    + L+ ++R            E  
Sbjct: 980  RGENFATKLDTLHEQYGPNPQLDQDRSSTSMSQT-LEQRLEDIERVSATRAERLRILELQ 1038

Query: 571  IVDVRQGYQQA-------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
              ++              +          RQ+ E+ +Q         +E +  ++  
Sbjct: 1039 GNELIARLSSTSERGTAMINRIAEREATRRQEAELVEQTVSSEEATSSEASTRIVRH 1095


>gi|328697842|ref|XP_001942978.2| PREDICTED: moesin/ezrin/radixin homolog 1-like [Acyrthosiphon
           pisum]
          Length = 572

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                +++  +  E    +  ++   Q+  A    A  +    + R    QA    +   
Sbjct: 300 DTIDVQQMKAQAREEKLAKQQQREKLQLEIAAREKAEKKHQEYEERLKVMQAEISKREQD 359

Query: 590 LLSRQ--KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           LLS Q     +E+Q+ ++      E+     + L ++  ++ + ++ EA+
Sbjct: 360 LLSAQDMIRRLEEQLNKLQLA--KEELEQRQNELQKMMERLEESKNMEAV 407



 Score = 37.9 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 65/186 (34%), Gaps = 7/186 (3%)

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
           +N    D+K   + + + +      + +  + +  L L + NH    +   +       D
Sbjct: 248 RNISFNDRKFIIKPIDKKAPDFVFFAPRVRINKRILALCMGNH----ELYMRRRKPDTID 303

Query: 512 NNELQK-LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
             +++        +   +++    E   +   E+   E  ++L     +         + 
Sbjct: 304 VQQMKAQAREEKLAKQQQREKLQLEIAAREKAEKKHQEYEERLKVMQAEISKREQDLLSA 363

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQI 628
              +R+  +Q   L      L +++ E++K + ++      E      L   +     ++
Sbjct: 364 QDMIRRLEEQLNKLQLAKEELEQRQNELQKMMERLEESKNMEAVERAKLEEEIKAKQEEV 423

Query: 629 HQIESQ 634
            +I+S+
Sbjct: 424 MRIQSE 429


>gi|327401980|ref|YP_004342819.1| SMC domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327317488|gb|AEA48104.1| SMC domain protein [Archaeoglobus veneficus SNP6]
          Length = 885

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 37/96 (38%), Gaps = 1/96 (1%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                 + L++++R +          +A   +  +       L +R +   +  +EIEK+
Sbjct: 211 RRDELRKQLEEIERVIEPLRKKIERMDALSREFDKLALDEARLAERIKAEEKAIQEIEKE 270

Query: 602 IAQVTAKGEAEKTAILISI-LHEVHIQIHQIESQEA 636
           I ++    +  +     +        +I ++E QE+
Sbjct: 271 IKRIEEFEKEFEKLRESAEAYLSAEKRIAELEQQES 306


>gi|323340147|ref|ZP_08080411.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Lactobacillus ruminis ATCC 25644]
 gi|323092338|gb|EFZ34946.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Lactobacillus ruminis ATCC 25644]
          Length = 650

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 57/169 (33%), Gaps = 22/169 (13%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A + +        ++     K+ + +     +       +    L +
Sbjct: 476 NHLDIDSKEVLENAVMDFNGTVLFVSHDRYFINKVATCVLEIAPQGSTLYLGDYDYYLEK 535

Query: 544 RGFGELLKQLDRQVRDAGLWSATT----------EANIVDVRQGYQQALALYKRF-RLLS 592
           +   E +             S                     +  ++++  +++    L 
Sbjct: 536 KAEQEEIAAAKSTAETPIENSPKEVSTGKVNYQQGKERQKQERRLKRSVEEFEQLVEKLD 595

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639
            QK ++E Q++      + EK   L + L E+  ++ + E   ++A +E
Sbjct: 596 AQKNDLENQMSSPENYNDLEKMGELQAKLQEISKKLAEAEENWEQASME 644


>gi|322783674|gb|EFZ11012.1| hypothetical protein SINV_10610 [Solenopsis invicta]
          Length = 1935

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/286 (10%), Positives = 94/286 (32%), Gaps = 24/286 (8%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                     ++ +       ++L     + ++        + ++  +     IK + L+ 
Sbjct: 767  TNEKEFQRLQEQLASMRTEKEILEGVLFDTQTNLETTHIRKTQLEKEQKEMLIKQESLKG 826

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              ++  ++      +   T+ S   +  ++ A  +      +R  + S+ K    K+   
Sbjct: 827  QVTRLTKELENSEKRAQDTKQSLTQQSGEQIAEFQQIISNMKRQSEDSIKKINDEKEQVR 886

Query: 483  --REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
               E  L  +L+    +  E+ +E+  ++     +++L   + +   + +    E + + 
Sbjct: 887  ISLEKRLQQSLLQ---VEGEKNEEINQLQ---QRIEELQQHIENLCKQHE----EALLRA 936

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDV------RQGYQQALALYKRFRLLSRQ 594
              ++    L+   D+Q     + +   E            R+   +A         L  +
Sbjct: 937  ENDKQQALLIAHHDQQALIEKIDTIMRELEEEKNTLERVKREAAARADQERNNTNQLRDE 996

Query: 595  KEEIEKQIAQVTAKGEAEKT------AILISILHEVHIQIHQIESQ 634
               ++ ++ +   K   EK         L         ++ +++ Q
Sbjct: 997  LNRLKTKLDETKLKASEEKMKLDLKIEELWKERESTQREVEELQVQ 1042


>gi|316984478|gb|EFV63447.1| replicative DNA helicase domain protein [Neisseria meningitidis
           H44/76]
          Length = 178

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 42/131 (32%), Gaps = 12/131 (9%)

Query: 475 KLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            L       E ++L   ++ +PA        ++   +  +E + ++  +     E +   
Sbjct: 35  SLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIAKLINESRPAD 93

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L      E     +  +  A    +              +  A   R R + R
Sbjct: 94  VITVQEDLQRNEELEAAGGFEYLITLAQNTPSAANI----------RRHAEIVRERSIMR 143

Query: 594 QKEEIEKQIAQ 604
           Q  E+  +IA+
Sbjct: 144 QLAEVGTEIAR 154


>gi|301754611|ref|XP_002913131.1| PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform
           1 [Ailuropoda melanoleuca]
          Length = 1427

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 47/393 (11%), Positives = 120/393 (30%), Gaps = 32/393 (8%)

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
            AL    + + K+     S      +   DV++L ++ ++  ++S   A+       L  
Sbjct: 578 KALQGATEKLSKENESLKSKLDHANKENSDVIALWKSKLETAIASHQQAM-----EELKV 632

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFE 372
              + V     +   L+   + I L   H I   +          D +         A  
Sbjct: 633 SFSKGVGTETAEFAELKTQIEKIRLDYQHEIENLQNKQ-------DSERSAHAKELEALR 685

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELE---IHLKNCINHIKD-------QKLRY 422
             ++  +   +   +               E+E     L+     +KD          + 
Sbjct: 686 GKLMAVITEKESSLEALKAKLDKAEDQHLVEMEDTLNKLQEAEIKVKDLEVLQAKCSEQT 745

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                   +L+   +K + +     +   +     ++        +  +   ++ K    
Sbjct: 746 KVIDNFTSQLKATEEKLL-DLDALRKASSEGKSEIEKLRQQLEAAEKQIKNLEIEKNTES 804

Query: 483 REAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            +A+ +   +    + L    + L+++      L+K    L   F +             
Sbjct: 805 GKASSITRELQGKELTLNNLQENLSEVSQVKEALEKELQILKDKFADASEEAVSV----- 859

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +R   E + +L ++       S   E    ++     +     +R   L + KE++E  
Sbjct: 860 -QRSMQETVNKLHQKEEQFNALSTELEKLRENLTDMEAKCRERDEREEQLIKAKEKLEND 918

Query: 602 IAQV--TAKGEAEKTAILISILHEVHIQIHQIE 632
           IA++   +   + +   +   L      I +++
Sbjct: 919 IAEIMKMSGDNSSQLTKMNDELRLKERNIEELQ 951


>gi|296218663|ref|XP_002755556.1| PREDICTED: hypothetical protein LOC100401915 [Callithrix jacchus]
          Length = 1523

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 93/277 (33%), Gaps = 18/277 (6%)

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR---- 431
             +    D   +    + +   P  ++E  + ++     I  + L    ++    R    
Sbjct: 720 QTAARGQDQRLEGMVGDPAQQKPQWKSEEALEVQAWEGPIPGESLASGVTEQEALREEVT 779

Query: 432 -LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            L++  +    E     R  +       +        + +  +     +    E A L  
Sbjct: 780 QLRRKAEALGAELEAQARKLEAQGMEAARLSKELAQARKAEAEAHREAEAQAWEQAWLRE 839

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
            +   A  +E      ++   + E + L   L +   E++ +  E    R       E +
Sbjct: 840 AVE--AARRELEAASRELEAVSREREALAEALAAAGRERRQWEREGSRLRTQSEATEERM 897

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           + L+R+ R     +         ++   ++A+    R + L  + E++++++ Q   + +
Sbjct: 898 QALEREGRQHLQEAERERQEKEALQGELEKAM---VRGKELGARLEQLQRELEQAALERQ 954

Query: 611 AEKTAILIS--ILHEVHIQIH-QIES-----QEAMIE 639
                          +  ++  ++++     +EA++E
Sbjct: 955 EFLREQESQHQRYQGLEQRLEAELQAAATSKEEALME 991


>gi|281212081|gb|EFA86242.1| hypothetical protein PPL_00804 [Polysphondylium pallidum PN500]
          Length = 747

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 59/165 (35%), Gaps = 3/165 (1%)

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           K+   +E  LL  +      +++    L +        Q+      +  VE      E+I
Sbjct: 339 KRMKQKEDELLNLISQKDDDIKKVKLTLKEKEKIIIANQR-KEAELNQTVEAFERQVEDI 397

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +      ++ + ++ Q         T ++   +      Q   + ++   L+ +  E
Sbjct: 398 RDSINREWEIKVAEAIEEQTSKYASLEMTAKSFDFERETFRNQIAVIQQQTEDLNVKNHE 457

Query: 598 IEKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           +  +I  ++ +   + ++   L +   E+   + + +++    +G
Sbjct: 458 LSDRILDLSNELRNKEQQIITLTAEQEELKKNLRRSQAELKSKDG 502


>gi|224045540|ref|XP_002196967.1| PREDICTED: kinesin family member 15 [Taeniopygia guttata]
          Length = 1619

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 85/294 (28%), Gaps = 26/294 (8%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +       K   E+     L       +  +         ER +     +  +  IK  +
Sbjct: 758  EQLSTMQTKLDEEESKNMKLQQHINKLEHHSAQIQELLSSERNDWSKERQELLEQIKSLE 817

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRY------WKKNARHRDQKGPSQRLMQSSLVK 473
             +   SQ   D L               +            R + +K  SQ   +   V+
Sbjct: 818  KQLQESQNKADLLTSEVHDLRIVLQSADKELSDIKLEYSAFREKQEKEISQLSGRHMDVQ 877

Query: 474  GKLSKKPSLREAALLLTLINHPAILQEQYQELADI-RYDNNELQKLWSFLFSDFVEQKYF 532
             +L       E      ++   A LQ+ Y  L ++ +++ +   +L   L     E +  
Sbjct: 878  FQLDSVRLEHEK-----ILEEKASLQDDYDNLQEVAKFETD---QLKQQLEDRKQEAEAM 929

Query: 533  LPE--EIHQRLC-----ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
              E   + Q L             L++         L             +   Q     
Sbjct: 930  KTELCNLLQLLKTEKEHNEKLTLQLQEDKENNSKEPLKVLEKGQVEKPFSEMVTQCEQQE 989

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQEAM 637
             + R L ++    E+ IA +    + +K     L+  + E+   I+     E++
Sbjct: 990  AKLRTLEQELAAAEETIASLKKTNDTDKEVVTDLMRQIQELRSSIN--HKTESI 1041



 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/253 (9%), Positives = 80/253 (31%), Gaps = 29/253 (11%)

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
           + E         + +   +       + ++  +    + + I +  +   ++ +++    
Sbjct: 629 QAELATSKQEYEEFKELTKKKQMELESELQSLQKANQHLENILEATKAHKRREVSQLHKL 688

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
            R   K+     +    +  +   +      +     E            ++ +  +E  
Sbjct: 689 RRESLKSITTPTRAYQLRSRLVPRISPDNNFEDFQHSE-----------EMMDDILKEPV 737

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            +  +    + +   L     +        +  +L E     +  +L + +      SA 
Sbjct: 738 PLEMNEQACEAIAEEL-----KGAQEQLSTMQTKLDEEESKNM--KLQQHINKLEHHSAQ 790

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            +  +   R  +       K  + L  Q + +EKQ+ +   K +      L S +H++ I
Sbjct: 791 IQELLSSERNDWS------KERQELLEQIKSLEKQLQESQNKADL-----LTSEVHDLRI 839

Query: 627 QIHQIESQEAMIE 639
            +   + + + I+
Sbjct: 840 VLQSADKELSDIK 852


>gi|194381232|dbj|BAG64184.1| unnamed protein product [Homo sapiens]
          Length = 1086

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 82/293 (27%), Gaps = 51/293 (17%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                      ++ I  S            E       ++           +      +L
Sbjct: 689 EQKNRQMLEQLKEEIEASEKSEQAALNAAKEKALQQLREQLEGERKEAVATLEKEHSAEL 748

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                    +RL    +    E     +   + A+ +++    + L Q      + S   
Sbjct: 749 ---------ERLCSSLEAKHREVVSSLQKKIQEAQQKEEAQLQKCLGQVEHRVHQKSYHV 799

Query: 481 SLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           +  E  L   L      ++ E  + L  ++    E Q++ +     +  ++     E+  
Sbjct: 800 AGYEHELSSLLREKRQEVEGEHERRLDKMK---EEHQQVMAKAREQYEAEERKQRAELLG 856

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L        L++L R                    +  +Q    +KR   L R+  E E
Sbjct: 857 HLTGE-----LERLQR--------------AHERELETVRQEQ--HKRLEDLRRRHREQE 895

Query: 600 KQIAQVTAKGE----------------AEKTAILISILHEVHIQIHQIESQEA 636
           +++  +    E                 E        L +V  Q+  ++S+EA
Sbjct: 896 RKLQDLELDLETRAKDVKARLALLEVQEETARREKQQLLDVQRQV-ALKSEEA 947


>gi|4468708|emb|CAB38183.1| intermediate filament protein IF2 [Sagitta elegans]
          Length = 526

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 97/284 (34%), Gaps = 10/284 (3%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++        K + E+          ET         + A LE  L +     +D+   +
Sbjct: 136 VKFEKLEETLKEMYEAELDQARKTIDETTKAKAEVELKVARLEEELADYRRRYEDEAREH 195

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
             ++A   +L++   +   +     +      R   +       +Q  L   K +    +
Sbjct: 196 AITKANIPKLEKAISERDAQIDFLTKNVDALERELARLKGEIARLQRDLSDAKTAADAEI 255

Query: 483 REAALLLTLINHPA--------ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                L +++            + +E+ ++L D+ +D+ + + ++S   +  +       
Sbjct: 256 VARIELESMVQSKDDEINFLKNMYEEKIRQLMDLNFDSEDYRAMFSNELALALRDIRAEY 315

Query: 535 EEIHQRLCERGFGE-LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           + I +             + +  +  +        ++  +VR+   +   L K    L  
Sbjct: 316 DAILEAQKGADNDSWYKAKFNEMMMTSQRSGNELASSKDEVRKARAKYSELQKEIMGLRA 375

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
               +E++I  + A+ + +     ++ + E   +I ++ +Q A 
Sbjct: 376 HNAALEERILALEAELDEQAKMHRLA-IDERDAEIEKLRAQLAA 418


>gi|30584609|gb|AAP36557.1| Homo sapiens lamin A/C [synthetic construct]
 gi|60652591|gb|AAX28990.1| lamin A/C [synthetic construct]
 gi|60652593|gb|AAX28991.1| lamin A/C [synthetic construct]
          Length = 573

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ + ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|146419024|ref|XP_001485477.1| hypothetical protein PGUG_03206 [Meyerozyma guilliermondii ATCC
           6260]
 gi|73476193|emb|CAJ26341.1| beclin 1 [Meyerozyma guilliermondii]
          Length = 461

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 57/143 (39%), Gaps = 11/143 (7%)

Query: 498 LQEQYQELADI-RYDNNELQKLWSFLFSDFV---EQKYFLPEEIHQRLCERGFGELLKQL 553
           L++ +  L++    ++    +    L  ++    +Q     +     L +    +     
Sbjct: 129 LEKIFDILSNKGEVNHPMCDECAELLIENYKLKFDQNQREKDLYMTFLKKLKLKD----- 183

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           D  +++  L +   + +I + R          +  R L + +EE+ K++  V  +   ++
Sbjct: 184 DSDIKELDLDTKLRD-SIQECRDLAASEQEKLQELRSLEQNREELSKELQDVKMELALQQ 242

Query: 614 TAILISILHEVHIQIHQIESQEA 636
           +  L++ L  +  ++H    ++A
Sbjct: 243 STELLNALR-LKNELHWTLQRKA 264


>gi|260428964|ref|ZP_05782941.1| conserved hypothetical protein [Citreicella sp. SE45]
 gi|260419587|gb|EEX12840.1| conserved hypothetical protein [Citreicella sp. SE45]
          Length = 853

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 47/131 (35%), Gaps = 15/131 (11%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA-----GLWSATTEANIVDVRQG 577
            +  +E+     E + + +      + + +L +++R+A        S   + N  D  + 
Sbjct: 496 LASALERLQRAQERLSEAMKNGASEQEIAELMQEMREATDDYLRQLSRQAQQNAEDNPEM 555

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ--- 634
            Q    +      L R  +    +I ++  +G   +    +  L ++   +   + Q   
Sbjct: 556 SQSQDMMEMSQNDLQRMMD----RIQELMEQGRMAEAQEALEQLQQLMENMQVTQGQQGQ 611

Query: 635 ---EAMIEGFG 642
              E  +EG G
Sbjct: 612 SPGEQAMEGLG 622


>gi|209734660|gb|ACI68199.1| Tripartite motif-containing protein 25 [Salmo salar]
          Length = 380

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 43/100 (43%)

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           E+ Q+  ++ F E  K+L    +    +  + +A + D  Q + + +   +R     ++ 
Sbjct: 203 EMSQQKVQQRFQEREKELKELQQAVESFKRSAQAAVEDSDQIFTELIRSIERRSSEVKEL 262

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
              +++     A+G  E+    I+ L +   ++ Q+   E
Sbjct: 263 IRAQEKDQVSEAEGVLEQLKQEIAELRKRSTELEQLSHTE 302


>gi|183231366|ref|XP_656156.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|169802526|gb|EAL50770.2| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 700

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 80/216 (37%), Gaps = 17/216 (7%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRD--QKGPSQRLMQSSLVKGKLSKKPSLREA 485
            ++ L++ F +   E         +    +   +    ++ +Q  + + K   +  L+E 
Sbjct: 136 CKEELKKDFLETKIEVIENNFDKMQEYWAKKIVESDEKEKELQKEINEIKELNEKLLKEK 195

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                      ++  + Q+  +I+  N   +++   L S          ++I   + ++ 
Sbjct: 196 E--EWYEEQQELIIWKEQKEEEIKKLNERNEEIIDILKSLKPSDNTNEEDKII--ISKKE 251

Query: 546 FGELLKQLDRQV-----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           + ++ K+++                  +     + N +D+ +       + K+   L+ +
Sbjct: 252 YEDIQKRIEELEIKCNFKEELENLKKRVEEVEKKINKMDINEINDNINEVNKKNEELNEK 311

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             E++++  +     EA K    + +L+E+  ++ +
Sbjct: 312 INELKEEKMKNENSIEASKQQNELKVLNELIRELQE 347


>gi|159127477|gb|EDP52592.1| Taz1-interacting factor 1 (TAF1), putative [Aspergillus fumigatus
           A1163]
          Length = 1264

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/216 (9%), Positives = 60/216 (27%), Gaps = 11/216 (5%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +   S+ +       F              + +   R          ++   +    +  
Sbjct: 521 QSQLSRPVSGNFNLEFPSSPASPYPDELSRRSSVSSRRMSANQSSEDKTLAQRIVTLEAE 580

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E   +  L       +   + L++              + +    Q+ F  E   +R
Sbjct: 581 LNAERETVQRLQK-----EAHAERLSNTDKIQEAQSTKRDLIDNLEARQREFDEE---RR 632

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LLSRQKEEIE 599
             E    +   + +    +    + + +    D  +   Q     +        +     
Sbjct: 633 YLEGELKKYRLRTEELEEELDRITDSRDHAKQDADERINQLETELQNLHIHTEEELHRAN 692

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             + Q+ A+   E++  L   ++E+  Q  +I++ E
Sbjct: 693 DLLEQMQAQKMTEES--LQQRINELEKQQSEIKATE 726


>gi|146084523|ref|XP_001465030.1| kinesin [Leishmania infantum JPCM5]
          Length = 1091

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 93/311 (29%), Gaps = 24/311 (7%)

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESL----PLVDMLWKRETENRSFNTPDERAELEIH 407
            + + EDP   +    +     L               + +  E R      + A+ E  
Sbjct: 554 WVKKNEDPQVVLIRELREQVVDLEQRLKEAGGSNYTNEYVQGLERRLHQLEKKCADQERI 613

Query: 408 LKNC-----INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
           +           I D  +   Y      R ++  Q+   E +   +  K      + +  
Sbjct: 614 IAGLRAQLEFAGIVDPTVAEGYLDP-ATRAKEDQQRTKAEENMRKQLDKAQITIAELRAE 672

Query: 463 SQRLMQSSLVK--GKLSKKPSLREAALLLT---LINHPAILQEQYQELADIRYDNNELQK 517
            +    +   +    + +K   ++A LL     +  H  +    ++ +  +       + 
Sbjct: 673 LEHRGVTIEPESLKAMKEKLQRQDAQLLALTTEVSLHRRLRS-HFENIDTVMELVKGKET 731

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L     +  +         + + L ER       +   +   A       E     + +G
Sbjct: 732 LLLCACNGILTANSEAAAILQKMLSEREDDLRDTKRLHEEELATQAERFCERLKEALDEG 791

Query: 578 YQQALALYKRFRLLSRQKE-EIEK--QIAQVTAKGEAEKTAILISILHEVHIQIH----- 629
             Q   L  R R    Q E  +++  +I ++  K   ++   L   +     ++      
Sbjct: 792 AVQQQQLLDRHRDAVAQLEGRLQRSHEINEMERKRNDKEKEELRQRVQLAQERMRNEYQQ 851

Query: 630 QIESQEAMIEG 640
           +IE   A +EG
Sbjct: 852 EIERLRARVEG 862


>gi|157872952|ref|XP_001684997.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68128068|emb|CAJ08166.1| hypothetical protein LMJF_31_0130 [Leishmania major strain
           Friedlin]
          Length = 826

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 80/248 (32%), Gaps = 16/248 (6%)

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
            + ++E E++              LK     I++   +    Q   ++ +QL+     E 
Sbjct: 378 DMLRKELESKQLGFQRTLDATFAELKGTQRQIEEAAEQCEGYQCAAEQYKQLYSDKQKEM 437

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
                  +      +     QR  +S       S++    E A+        A+ +E  +
Sbjct: 438 EKVKTQLQSLLYDVNAMEQHQRATESEYADKAASER-EKAERAV--------ALAEEVKR 488

Query: 504 ELADIRYDNNELQ-KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
           +   +++ N + + ++ + + +               R     + + ++QL+  +     
Sbjct: 489 QRDHLQFLNTQFRNEVSAAVEAKRQAVDQAASANDTARRDRADYEQRIQQLNEDIVRLRK 548

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
             A  +       +  QQA A+ K      R K++ E+Q  +        +         
Sbjct: 549 ALADKDRAHEVQLREAQQAQAVLK-----DRLKDQAEEQQREAERNHRTLEVTKE-DHKR 602

Query: 623 EVHIQIHQ 630
            +  +  +
Sbjct: 603 ALQQERMR 610


>gi|50950037|emb|CAH10561.1| hypothetical protein [Homo sapiens]
          Length = 486

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +        E        + +   K++         +E  + +   ++ +   K  
Sbjct: 145 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 202

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    ++  L  L ++     S      ++    + ++  + + +Q S+ + K   
Sbjct: 203 AEYTILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDC 262

Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +  E   +  L           Q+L D       L+K +         +     +  
Sbjct: 263 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 319

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE
Sbjct: 320 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 376

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +E+   +  A  E +        L ++  +++++  QE
Sbjct: 377 LEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 414


>gi|8184|emb|CAA34351.1| lamin [Drosophila melanogaster]
          Length = 621

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 53/134 (39%), Gaps = 17/134 (12%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           +L++    L + + EQ     +EI   + ++        + R    A   S +T  +I +
Sbjct: 262 QLKQSLQELRAQYEEQMQINRDEIQSLIEDK--------IQRLQEAAARTSNSTHKSIEE 313

Query: 574 VRQGYQQALALYKRFRLLSR-------QKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           +R    +  AL      L +       +  ++E+Q+     +   E   +L   L  +  
Sbjct: 314 LRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQE-IDLLEKELIRLRE 372

Query: 627 QI-HQIESQEAMIE 639
           ++  Q++  + +++
Sbjct: 373 EMTQQLKEYQDLMD 386


>gi|20094208|ref|NP_614055.1| hypothetical protein MK0771 [Methanopyrus kandleri AV19]
 gi|19887233|gb|AAM01985.1| Uncharacterized protein [Methanopyrus kandleri AV19]
          Length = 609

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 67/222 (30%), Gaps = 17/222 (7%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
            +   K   +                +K              +    PS  EA L     
Sbjct: 47  AEAVPKLKLKPPKPSEKPPSGEEEEKKKEERPPAEIKPPKPPEERTAPSNLEAELERLKA 106

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE---------EIHQRLC- 542
            +  + +E  +     +    E  +L S +     E +    E         ++ ++L  
Sbjct: 107 ENKKLREELDEWRNKAKSAMGERDRLRSEIKRLKEELEKQEKELDKYIKISKQLKEKLEK 166

Query: 543 ----ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                    E  ++   +           ++ + D+    ++     K+ +    + +E 
Sbjct: 167 AKRESEELKEKAEEYRERYEKIAGKYNELKSKLEDLSDQNRRLAENLKKLKEKYNEIKEE 226

Query: 599 EKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQ-EAM 637
             ++ + T +     ++ A L S L EV  +   + ++ EA+
Sbjct: 227 RDRLKEETKEVGKLKDQLAKLQSKLKEVKSERDDLANEVEAL 268


>gi|328949833|ref|YP_004367168.1| hypothetical protein Marky_0303 [Marinithermus hydrothermalis DSM
           14884]
 gi|328450157|gb|AEB11058.1| hypothetical protein Marky_0303 [Marinithermus hydrothermalis DSM
           14884]
          Length = 835

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 69/226 (30%), Gaps = 24/226 (10%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---- 484
             +  Q  ++   +         + A    +  P+  L        +L  +    E    
Sbjct: 382 AQKKAQAQRETRLKAQRAFIEEARAATAPYRDAPTPELTAFLEALEQLEARTRAGEVDEA 441

Query: 485 ---------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                    A LL  L +    ++ +   L        +L +L     +   E +   PE
Sbjct: 442 QLAHLKNALAQLLADLSHQREGVELKRAHLRAALQALPDLPELAEARDALLAELETTPPE 501

Query: 536 EIHQRLCE------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-- 587
            + +R+            E L+ L  Q     L      A    +  G    L   +R  
Sbjct: 502 ALAERVEALAQRARAQVHECLQALRAQAERYRLPLEPFTAAEAQLAAGEFPDLTALERHL 561

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEK---TAILISILHEVHIQIHQ 630
                 +KEE+ + + +  A  ++ K      L+  + E+  ++ +
Sbjct: 562 TEAFEARKEEVRELLNRFEAAAQSYKGLGGEPLLQRIQELKARLDE 607


>gi|308184882|ref|YP_003929015.1| ATPase [Helicobacter pylori SJM180]
 gi|308060802|gb|ADO02698.1| ATPase [Helicobacter pylori SJM180]
          Length = 861

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 97/299 (32%), Gaps = 26/299 (8%)

Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
                  ++ +    D    +    +   E+         + ++ R     S    +   
Sbjct: 333 KHETIQKYIKIQPDIDIVDSVEYLAQNEVEEFATNVSRFTEAIFNRIDSKSSGTLKELEK 392

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
           +++  ++     I   + +      + ++L++  +      +    +  K+   +  K  
Sbjct: 393 QIKKGIEKFDEQIVYWQEKT----KLEEQLKESEKIRKKYQNIINTFTDKDYLDKKDKLQ 448

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
            +      L + K      ++E   L  ++N      E  + + +    +    +L   +
Sbjct: 449 KKHKALIDLRQSKEGFLTFIKE---LKRVVNF-----ESKENMEEKNSYDKAYNQLKQDI 500

Query: 523 FSDFVE------QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
             +  E         F  E+ + R+ E     L +++   +++ G+    ++ NI D+R 
Sbjct: 501 CKELEEIDTNRENGCFKSEDENIRMLETEHEALSQEIGEFLKEKGV----SDENIGDIRN 556

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIA----QVTAKGEAEKTAILISILHEVHIQIHQI 631
                         L R+ +EI  +I     +   K   E    +   L +++    +I
Sbjct: 557 ANYHLANEKMNIADLEREIKEIANKIEGFSYEDMDKNIEEFKNQINKELDKINSAFEEI 615


>gi|293352992|ref|XP_223172.5| PREDICTED: guanylate binding protein family, member 9 [Rattus
           norvegicus]
          Length = 609

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 64/213 (30%), Gaps = 11/213 (5%)

Query: 422 YYYSQAIRDRLQQLFQKYITEH------SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +YS+ +  RL+                             +D+     + +   + + K
Sbjct: 325 DHYSEQMAQRLRLPTDTLQELLDEHTACEKEAISVFMEHSFKDENQLFLKKLVKLIGEKK 384

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   EA+          + ++  + ++   +      +L+  +        + +P 
Sbjct: 385 GLFVLKNEEASDKYCQEELDRLSKDFMENIS--TFSVPGGHRLYVDMREKIERDYWQVPR 442

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           +  +      F   L+     +  + L + T            +      ++ + L RQK
Sbjct: 443 KGVKA--SEVFQSFLQS-QVIIESSILQADTALTAGEKAIAEERTQREAAEKEQELLRQK 499

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +  ++Q+ +   K   E    L   L +   Q+
Sbjct: 500 QREQQQLMEAQEKSNKENLEQLREKLVQERKQL 532


>gi|268580521|ref|XP_002645243.1| C. briggsae CBR-MYO-2 protein [Caenorhabditis briggsae]
          Length = 1945

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 73/246 (29%), Gaps = 12/246 (4%)

Query: 392  NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
                    +  +      +     K +  R    + +   + +L       +       K
Sbjct: 1598 ENHRKVHQQTIDSIQATLDSETKAKSELFR--VKKKLEADINELEIALDHANKANEDAQK 1655

Query: 452  KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
               R+ DQ    Q+ +     + +  ++  L     L         L  + + +   R  
Sbjct: 1656 NIRRYLDQIRELQQTVDEEQKRREEFREHLLAAERKLAVAKQEQEELIVKLEAIERAR-- 1713

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--- 568
                + + S +            + +     +      +  L   + +A    + +E   
Sbjct: 1714 ----RVVESSVKEHQEHNNELNSQNVALATAKSQLDNEIALLKSDIAEAHTELSASEDRG 1769

Query: 569  -ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                 D  +  +      ++ + L R K+++E  +  +  + +A + A++      +   
Sbjct: 1770 RRAASDAAKLAEDLRHEQEQSQQLERFKKQLESAVKDLQERADAAEAAVMKGGAKAIQKA 1829

Query: 628  IHQIES 633
              ++++
Sbjct: 1830 EQRLKA 1835


>gi|21743784|ref|NP_663715.1| filamin-A-interacting protein 1 [Rattus norvegicus]
 gi|81866809|sp|Q8K4T4|FLIP1_RAT RecName: Full=Filamin-A-interacting protein 1; Short=FILIP
 gi|21392399|dbj|BAC00851.1| filamin-interacting protein L-FILIP [Rattus norvegicus]
          Length = 1212

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 99/364 (27%), Gaps = 22/364 (6%)

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           +   DV+ + +              +    ++L  L    +L  +             +L
Sbjct: 91  QAREDVIHMLRTEKTKPEVLEAHYGSAEPEKVLRVLHRDAILAQEKSIGEDVYEKPISEL 150

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRETENR 393
                        +L                   E    +    +    D     E E  
Sbjct: 151 DRLEEKQKETYRRMLEQLLL--AEKCHRRTVYELENEKHKHTDYMNKSDDFTNLLEQERE 208

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                 E+ +     K   N  +  KLR    +     L  + ++ +       +  K  
Sbjct: 209 RLKKLLEQEKAYQARKEKENAKRLNKLRDELVKLKSFALMLVDERQMHIEQLGLQSQKVQ 268

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQELADIRYD 511
              +  +   ++L   +    +  +K    E         H A    QE  +  A +   
Sbjct: 269 DLTQKLREEEEKLKAVTYKSKEDRQKLLKLEVDF-----EHKASRFSQEHEEMNAKLANQ 323

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
            +  ++L   L       +         +  E    EL +++ +         A  E+  
Sbjct: 324 ESHNRQLRLKLVGLSQRIEELEETNKSLQKAEEELQELREKIAKGECGNSSLMAEVESLR 383

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             V +   +   + K       Q  E++K++ +         +  L   + ++  ++ ++
Sbjct: 384 KRVLEMEGKDEEITKT----EAQCRELKKKLQEEEHH-----SKELRLEVEKLQKRMSEL 434

Query: 632 ESQE 635
           E  E
Sbjct: 435 EKLE 438


>gi|28972888|dbj|BAC65860.1| mKIAA3005 protein [Mus musculus]
          Length = 1833

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 101/288 (35%), Gaps = 22/288 (7%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +   R + +   EK I+      +     E E        ++ ELE  L +  + +++++
Sbjct: 733  EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 792

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             R    Q  + ++Q   Q    +        +K    +       + M+  ++  +    
Sbjct: 793  ERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEVLLLEDQNS 852

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537
              ++E  L+         + E   +LA+       L K+     +    +E++    E+ 
Sbjct: 853  KFIKEKKLME------DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKT 906

Query: 538  HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             Q L +             + + +L  QV +  +     E    +++    +        
Sbjct: 907  RQELEKAKRKLDGETTDLQDQIAELQAQVDELKVQLTKKE---EELQGALARGDDETLHK 963

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634
                +   E++ QIA++    E+EK +   +     ++  ++  ++++
Sbjct: 964  NNALKVARELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTE 1011



 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 84/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR---YWKKNA 454
             + + +L   ++     ++++ L Y   +  ++RLQQ       +     +     +K  
Sbjct: 1248 EEAKKKLLKDVEALSQRLEEKVLAYDKLEKTKNRLQQELDDLTVDLDHQRQIVSNLEKKQ 1307

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1308 KKFDQLLAEEKGISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1362

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1363 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1422

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1423 EVNMQAMKAQFERDLQTRDEQNEEKKRLLLKQVRELEAELEDERKQRALAVASKKKMEID 1482

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1483 LKDLEAQIEA 1492


>gi|67601903|ref|XP_666436.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54657438|gb|EAL36212.1| hypothetical protein Chro.50073 [Cryptosporidium hominis]
          Length = 706

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 49/142 (34%), Gaps = 11/142 (7%)

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
            + +++  + N +L +  + +   +     ++   +   L ++      + L+       
Sbjct: 334 IESISNNIFTNEDLIEWKAMIKEFYSNDPDYILS-LPGILQKKA-----RDLNNFQYGDD 387

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT-----AKGEAEKTAI 616
             +   E               L +    L  Q +++E Q+  +       K +  K   
Sbjct: 388 DIALILERKQKKASNQSLSGKTLIETRTNLQTQIKQLEAQLKNIGLDNIVRKSKLAKIDQ 447

Query: 617 LISILHEVHIQIHQIESQEAMI 638
           L   L +   QI +++ Q+ MI
Sbjct: 448 LQQELEKTINQIEKLKLQKEMI 469


>gi|326390990|ref|ZP_08212539.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992935|gb|EGD51378.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 769

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 69/203 (33%), Gaps = 27/203 (13%)

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +K PSQ+  +S + + K S     +    L  +  +  +L   +     + + N   Q +
Sbjct: 2   EKLPSQKKNKSFIEESKKSIAYLQKREEFLSRIFENEQMLIVVWALDGRVVWFNRYTQAV 61

Query: 519 WSFLFSDFVEQKYFL-------PEEIHQRLCERGFGELLKQLDRQVR------------- 558
                 +  E+              I + L + G+  +  + +  +              
Sbjct: 62  IGIAVEEQTERIDVSSIIPRDTISRIKENLDDIGYKGIHYKCENPMALKDGRQIYIMWHN 121

Query: 559 ------DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
                 +   +  +T  +I D++   ++          L+ +    +++++ +  +  A 
Sbjct: 122 SIIWDDEGNRYVVSTGIDITDLKNAERRLEEANNNLVALNEELMAQQEELSAMNEELMA- 180

Query: 613 KTAILISILHEVHIQIHQIESQE 635
           +   L   L E+  Q  +++  E
Sbjct: 181 REEELRQNLIEIQRQQEELKRSE 203


>gi|312221505|emb|CBY01445.1| hypothetical protein [Leptosphaeria maculans]
          Length = 573

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/105 (11%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++ ++   +   + ++ L+ + R     +          ++   Q      + +   ++ 
Sbjct: 16  QLIKQTKAQEAEKRIQALEAEKRIQAQEAEKRIQAQEAEKRIQAQEAEKRIQAQEAEKRI 75

Query: 596 E--EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           +  E EK+I    A    EK    +     +  +  + +  EA++
Sbjct: 76  QAQEAEKRIQAQEA----EKRIQALEAEKRIQRERREAQQAEALL 116


>gi|293476568|ref|ZP_06664976.1| SNF2 family Superfamily II DNA/RNA helicase [Escherichia coli B088]
 gi|291321021|gb|EFE60463.1| SNF2 family Superfamily II DNA/RNA helicase [Escherichia coli B088]
          Length = 963

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/224 (8%), Positives = 59/224 (26%), Gaps = 10/224 (4%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              +      + +    E   + + + +      +            ++  + +     E
Sbjct: 203 LMELYGMSTLIDEHTFGEVKAFRKQYMQADSDIAELKGRLSRFIKRTLRKNVLEYIKYTE 262

Query: 485 AALLLTLI----NHPAILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKY----FLP 534
              +            + +   + L            + L   +    +           
Sbjct: 263 RKAITIPFYPSEQEQDLYERVQKLLEREDSYALPKRHRHLTGLILRKLLSSSTKAVLNNL 322

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           + +  RL       +++     ++   +     +  + D                 L  +
Sbjct: 323 QILKSRLERLKLEGIVEDDMNIIQQIIMDDDLEDDIVEDAELVALDTECKVVDSDALQAE 382

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
             E+E  I +    G   K+  L+S L +   Q+ ++ + + +I
Sbjct: 383 INELESLIVKAEQIGTDTKSKELLSGLEQGFAQLAEMGAAKKVI 426


>gi|240103799|ref|YP_002960108.1| chromosome segregation protein [Thermococcus gammatolerans EJ3]
 gi|239911353|gb|ACS34244.1| DNA double-strand break repair rad50 ATPase (rad50) [Thermococcus
           gammatolerans EJ3]
          Length = 885

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 12/166 (7%)

Query: 475 KLSKKPSLREAALLLTLINHP-AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           K       R+A +L  L     +   E  + + ++     E   L          +K   
Sbjct: 562 KELHTLEERKADILKRLSERGFSSFDEVEERIGELEKPYREFLSLKDIPRRIEALEKKLD 621

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            E+            L  +L++      L  A  E +  D  +  ++ L    + R L R
Sbjct: 622 IEQRKADESRANIARLKAELEKA--RKELEEARKEFSEEDFERAEREYLE---KSRALER 676

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            + E+E        +   ++ A LI  L     +I + E +  +IE
Sbjct: 677 ARAELEGA------ESLRDEIARLIDELKANLGEIEKAERELELIE 716


>gi|255947012|ref|XP_002564273.1| Pc22g02290 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591290|emb|CAP97517.1| Pc22g02290 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 2038

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 1/120 (0%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQ 576
           L   L     E K  + E    +  E    E L+++ R +V ++      T   I     
Sbjct: 507 LRQQLRDLSAEVKVLVLEVAVAKHGEEYDREELEKIARGEVEESAKDLNETGRFISKHLT 566

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            ++    L ++   L R   E+  +     A+ +       +  L E+ I+      + A
Sbjct: 567 TFKDLHELQEQNHTLRRMLRELGDKQEGDEAQAKEATRRAEMDELKELRIRAQTNRDEIA 626


>gi|194379158|dbj|BAG58130.1| unnamed protein product [Homo sapiens]
          Length = 726

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/313 (8%), Positives = 87/313 (27%), Gaps = 16/313 (5%)

Query: 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
           + + ++C +              L   +     +    +    +D             +K
Sbjct: 313 NSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEELKK 372

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + E   +         E+            +   +   +            +   D+  
Sbjct: 373 KLEEGEEISGSDISGSEEDDDEEGEVGEDGEKRKKRRGSSSSSSSDSTCSVIEKPLDKF- 431

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
              Q    + S       +     ++K    +L      + K   +   RE  LL     
Sbjct: 432 LPNQAGKKKVSPDKMIEMQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQE 491

Query: 494 HPAILQEQYQELADIRYDNNELQKLW----SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           H ++L    ++L+ +       +K+       L     ++K      +      +   +L
Sbjct: 492 HQSLL----EKLSALE------KKVIVGGVDLLAKAEEQEKLLEESNMELEERRKRAEQL 541

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            ++L+ + ++         +   + +   ++   ++        +  +++++  +   +G
Sbjct: 542 RRELEEKEQERLDIEEKYTSLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQEHQR-EIEG 600

Query: 610 EAEKTAILISILH 622
             E    L   L 
Sbjct: 601 LLENIRQLSRELR 613


>gi|195150411|ref|XP_002016148.1| GL10652 [Drosophila persimilis]
 gi|194109995|gb|EDW32038.1| GL10652 [Drosophila persimilis]
          Length = 1181

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 41/363 (11%), Positives = 103/363 (28%), Gaps = 26/363 (7%)

Query: 276 LVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAI 335
           L +  +D             +        Y   ++      +++C D D     +     
Sbjct: 584 LNKNVVDYAQSKVGPENVQWALSLVQYDRYYEPVMKFCFGSVLICKDLDVAKKVS----- 638

Query: 336 DLVLCHLIPGNRVNFVLLSRGE-DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
                   P      V L     DP   +          ++ E   + ++    +     
Sbjct: 639 ------YDPRINCRSVTLEGDLVDPHGTVSGGAAPKGANILEELHSIRELEKNYKNLEVE 692

Query: 395 FNTPDERAELEIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
               ++      +L +  N IK+   LR +     + RL Q   +         +   ++
Sbjct: 693 LQRVEQEMASIENLAHSYNKIKENLDLRQHEVTMCKSRLAQTTFQQNQAEIEEMKVKVQS 752

Query: 454 ARHRDQKGPSQRLMQSSLVK---GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
              ++     ++      +K    KL+     RE  L           Q   +  A+ + 
Sbjct: 753 LEQQNADSREKQKTSQVKIKDIEAKLADAKGYRERELKSATNEVKETKQRAEKSSANWKK 812

Query: 511 DNNELQKLWSFL------FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
              E + L   +           EQ   + E + + + +     L ++      +     
Sbjct: 813 REQEFETLKLEITELQKTIESSKEQHQEMVENLEKFIAD--LAALQEKSSSAESEVAALE 870

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--KTAILISILH 622
              +     +    ++   L  +   + +Q +E+E Q+ +   +      +T      + 
Sbjct: 871 QGIKVQKDKLNAQNKEMRNLQVKREKMEKQNQELELQVKKKENEKSKSGTQTNEAKRRIQ 930

Query: 623 EVH 625
           ++ 
Sbjct: 931 DLE 933


>gi|300797736|ref|NP_001179291.1| filamin-A-interacting protein 1 [Bos taurus]
 gi|297478388|ref|XP_002690075.1| PREDICTED: filamin A interacting protein 1 [Bos taurus]
 gi|296484271|gb|DAA26386.1| filamin A interacting protein 1 [Bos taurus]
          Length = 1213

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 102/365 (27%), Gaps = 24/365 (6%)

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           +   DV+ + +              +    ++L  L    +L  +             +L
Sbjct: 92  QAREDVIHMLKTEKTKPEVLEAHYGSAEPEKVLRVLHRDAILAQEKSIGEDVYEKPISEL 151

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRETENR 393
                        +L                   E    +    +    D     E E  
Sbjct: 152 DRLEEKQKETYRRMLEQLLL--AEKCHRRTVYELENEKHKHTDYMNKSDDFTNLLEQERE 209

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                 E+ +     K   N  +  KLR    +     L  + ++ +       +  K  
Sbjct: 210 RLKKLLEQEKAYQARKEKENAKRLNKLRDELVKLKSFALMLVDERQMHIEQLGLQSQKVQ 269

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQELADIRYD 511
              +  +   ++L   +    +  +K    E         H A    QE  +  A +   
Sbjct: 270 DLTQKLREEEEKLKAVTAKSKEDRQKLLKLEVDF-----EHKASRFSQEHEEMNAKLASQ 324

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR-QVRDAGLWSATTEAN 570
            +  ++L   L       +       + +  E    EL  ++ + +  ++ L      A 
Sbjct: 325 ESHNRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLM-----AE 379

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           + ++R+   +     +       Q  E+ K++ +         +  L   + ++  ++ +
Sbjct: 380 VENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHH-----SRELKLEVEKLQKRMSE 434

Query: 631 IESQE 635
           +E  E
Sbjct: 435 LEKLE 439


>gi|118197697|ref|YP_874090.1| hypothetical protein YS40_077 [Thermus phage phiYS40]
 gi|116266388|gb|ABJ91471.1| hypothetical protein YS40_077 [Thermus phage phiYS40]
          Length = 1744

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/318 (9%), Positives = 96/318 (30%), Gaps = 15/318 (4%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
                               G  +         D + ++  +G    E+ +     + ++
Sbjct: 30  YKESNPTRSVYFQGQKTTKHGIAIETENGWHLVDVEEYLNRFGNALDEEQLNTISKIYNI 89

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              +  +    +  + + E +   +     ++ Q+      Q + +   +     + E  
Sbjct: 90  DISQYLQQEEISPEETKIEEKTTEQKEEVSVERQEEIKELQQELAEEKTEEVVDVLEEQL 149

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
             G    +      +        ++ +++ +   +    +  LL  +     + +E+ +E
Sbjct: 150 KEGSEALEEISEELESK-EISTKEAEVLENQRQLEIQAIKNDLLEAISQ---LAEERLKE 205

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-HQRLCERGFGELLKQLDRQVRDAGLW 563
              ++    E + L+  L     E    L E    + L      +L++       D  + 
Sbjct: 206 GNPLKLS--EAKDLYESLDKKSKEILDELKEFFTLEDLISEANKKLIES----KFDEFVE 259

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI--EKQIAQVT--AKGEAEKTAILIS 619
                    D     ++      + +    +   +  E+ + ++   AK + ++     +
Sbjct: 260 QFFPNDLDEDKESNLEKLENALDKVKEALFELRGLFNEEDLGKLVNLAKEKFDEFKETFA 319

Query: 620 ILHEVHIQIHQIESQEAM 637
              ++  +I +    EA+
Sbjct: 320 SAQDLSEEIKEELIDEAL 337


>gi|95102034|dbj|BAE94261.1| ZH12 [Rattus norvegicus]
          Length = 1244

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 407 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYIKNSRKEHQRILARRQT 464

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 465 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 506


>gi|72391324|ref|XP_845956.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62175949|gb|AAX70073.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70802492|gb|AAZ12397.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
            927/4 GUTat10.1]
          Length = 4334

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 39/331 (11%), Positives = 95/331 (28%), Gaps = 25/331 (7%)

Query: 315  PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             RI     GD       ++  + +         ++ +  +   D +     +      +L
Sbjct: 873  HRIREAASGDVELQGYVHEMEEQLAELRAENEELHRIREAASGDVELQGYVHEMEE--QL 930

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
                    ++   RE  +          E+E  L       ++++LR          L  
Sbjct: 931  AELRAENEELHRIREAASGDVQLQGYVHEMEEQLAELRA--ENEELRNTDGDK-ARELDV 987

Query: 435  LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
              +K             +N   R+  G   R +         ++K    E  L      +
Sbjct: 988  QNEKLHEMEEQLAELRAENEELRNTDGDKARELDV------QNEKLHEMEEQLAELRAEN 1041

Query: 495  PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-LPEEIHQRLCERGFGELLKQL 553
              +   +  +  ++   N +L ++   L     E +     E    R  +    +L +  
Sbjct: 1042 EELRNTEGDKARELDVQNEKLHEMEEQLAELRAENEELRNTEGDKARELDVQNEKLHEME 1101

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV-TAKGEA- 611
            ++                   R+   Q     ++   +  Q  E+  +  ++   +G+  
Sbjct: 1102 EQLAELRAENEELRNTEGDKARELDVQ----NEKLHEMEEQLAELRAENEELRNTEGDKA 1157

Query: 612  -------EKTAILISILHEVHIQIHQIESQE 635
                   EK   +   L E+  +  ++ + E
Sbjct: 1158 RELDVQNEKLHEMEEQLAELRAENEELRNTE 1188



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 37/361 (10%), Positives = 93/361 (25%), Gaps = 18/361 (4%)

Query: 286  LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
            L +                     L +L        + D    R      + +       
Sbjct: 940  LHRIREAASGDVQLQGYVHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQL 999

Query: 346  NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
              +           +      G  A E  +             E    +    +   +  
Sbjct: 1000 AELRAEN-------EELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTEGDKA 1052

Query: 406  IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQ 464
              L      + + + +    +A  + L+        E         +   +  + +  ++
Sbjct: 1053 RELDVQNEKLHEMEEQLAELRAENEELRNTEGDKARELDVQNEKLHEMEEQLAELRAENE 1112

Query: 465  RLMQSSLVKGK----LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
             L  +   K +     ++K    E  L      +  +   +  +  ++   N +L ++  
Sbjct: 1113 ELRNTEGDKARELDVQNEKLHEMEEQLAELRAENEELRNTEGDKARELDVQNEKLHEMEE 1172

Query: 521  FLFSDFVEQKYF-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L     E +     E    R  +    +L +  ++              +    R+   
Sbjct: 1173 QLAELRAENEELRNTEGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELDV 1232

Query: 580  QALALYKRFRLLSRQKEEIEKQIAQVTAKGEA-----EKTAILISILHEVHIQIHQIESQ 634
            Q   L++    L+  + E E+       K        EK   +   L E+  +  ++ + 
Sbjct: 1233 QNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNT 1292

Query: 635  E 635
            E
Sbjct: 1293 E 1293



 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/287 (10%), Positives = 84/287 (29%), Gaps = 11/287 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +      G  A E  +             E    +    +   +    L      + + +
Sbjct: 1077 EELRNTEGDKARELDVQNEKLHEMEEQLAELRAENEELRNTEGDKARELDVQNEKLHEME 1136

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGK--- 475
             +    +A  + L+        E         +   +  + +  ++ L  +   K +   
Sbjct: 1137 EQLAELRAENEELRNTEGDKARELDVQNEKLHEMEEQLAELRAENEELRNTEGDKARELD 1196

Query: 476  -LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-- 532
              ++K    E  L      +  +      +  ++   N +L ++   L     E +    
Sbjct: 1197 VQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRN 1256

Query: 533  -LPEEIHQ-RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               ++  +  +      E+ +QL     +      T      ++    ++   + ++   
Sbjct: 1257 TDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTEGDKARELDVQNEKLHEMEEQLAE 1316

Query: 591  LSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQE 635
            L  + EE+         + +   EK   +   L E+  +  ++ + E
Sbjct: 1317 LRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTE 1363



 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/287 (10%), Positives = 84/287 (29%), Gaps = 11/287 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +      G  A E  +             E    +    +   +    L      + + +
Sbjct: 1567 EELRNTEGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEME 1626

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGK--- 475
             +    +A  + L+        E         +   +  + +  ++ L  +   K +   
Sbjct: 1627 EQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELD 1686

Query: 476  -LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-- 532
              ++K    E  L      +  +      +  ++   N +L ++   L     E +    
Sbjct: 1687 VQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRN 1746

Query: 533  -LPEEIHQ-RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               ++  +  +      E+ +QL     +      T      ++    ++   + ++   
Sbjct: 1747 TDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTEGDKARELDVQNEKLHEMEEQLAE 1806

Query: 591  LSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQE 635
            L  + EE+         + +   EK   +   L E+  +  ++ + E
Sbjct: 1807 LRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTE 1853



 Score = 38.3 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 31/335 (9%), Positives = 89/335 (26%), Gaps = 26/335 (7%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    I     GD       ++  + +         ++ +  +   D +     +    
Sbjct: 835  KEELHCIREAASGDVELQGYVHEMEEQLAELRAENEELHRIREAASGDVELQGYVHEMEE 894

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +   + +        +            E       ++  +  ++ +    +  +    
Sbjct: 895  -QLAELRAENEELHRIREAASGDV-----ELQGYVHEMEEQLAELRAENEELHRIREAAS 948

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
               QL                +N   R+  G   R +         ++K    E  L   
Sbjct: 949  GDVQLQGYVHEMEEQLAELRAENEELRNTDGDKARELDV------QNEKLHEMEEQLAEL 1002

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-LPEEIHQRLCERGFGEL 549
               +  +      +  ++   N +L ++   L     E +     E    R  +    +L
Sbjct: 1003 RAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTEGDKARELDVQNEKL 1062

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV-TAK 608
             +  ++                   R+   Q     ++   +  Q  E+  +  ++   +
Sbjct: 1063 HEMEEQLAELRAENEELRNTEGDKARELDVQ----NEKLHEMEEQLAELRAENEELRNTE 1118

Query: 609  GEA--------EKTAILISILHEVHIQIHQIESQE 635
            G+         EK   +   L E+  +  ++ + E
Sbjct: 1119 GDKARELDVQNEKLHEMEEQLAELRAENEELRNTE 1153



 Score = 38.3 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 29/287 (10%), Positives = 85/287 (29%), Gaps = 11/287 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +      G  A E  +             E    +    +   +    L      + + +
Sbjct: 1147 EELRNTEGDKARELDVQNEKLHEMEEQLAELRAENEELRNTEGDKARELDVQNEKLHEME 1206

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGK--- 475
             +    +A  + L+        E         +   +  + +  ++ L  +   K +   
Sbjct: 1207 EQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELD 1266

Query: 476  -LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-- 532
              ++K    E  L      +  +   +  +  ++   N +L ++   L     E +    
Sbjct: 1267 VQNEKLHEMEEQLAELRAENEELRNTEGDKARELDVQNEKLHEMEEQLAELRAENEELRN 1326

Query: 533  -LPEEIHQ-RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               ++  +  +      E+ +QL     +      T      ++    ++   + ++   
Sbjct: 1327 TDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTEGDKARELDVQNEKLHEMEEQLAE 1386

Query: 591  LSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQE 635
            L  + EE+         + +   EK   +   L E+  +  ++ + E
Sbjct: 1387 LRTENEELRNTEGDKARELDVQNEKLHEMEEQLAELRAENEELRNTE 1433



 Score = 37.9 bits (86), Expect = 4.8,   Method: Composition-based stats.
 Identities = 29/287 (10%), Positives = 85/287 (29%), Gaps = 11/287 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +      G  A E  +             E    +    +   +    L      + + +
Sbjct: 1287 EELRNTEGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEME 1346

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGK--- 475
             +    +A  + L+        E         +   +  + +  ++ L  +   K +   
Sbjct: 1347 EQLAELRAENEELRNTEGDKARELDVQNEKLHEMEEQLAELRTENEELRNTEGDKARELD 1406

Query: 476  -LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-- 532
              ++K    E  L      +  +   +  +  ++   N +L ++   L     E +    
Sbjct: 1407 VQNEKLHEMEEQLAELRAENEELRNTEGDKARELDVQNEKLHEMEEQLAELRAENEELRN 1466

Query: 533  -LPEEIHQ-RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               ++  +  +      E+ +QL     +      T      ++    ++   + ++   
Sbjct: 1467 TDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAE 1526

Query: 591  LSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQE 635
            L  + EE+         + +   EK   +   L E+  +  ++ + E
Sbjct: 1527 LRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTE 1573



 Score = 37.9 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 81/287 (28%), Gaps = 11/287 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +      G  A E  +             E    +    +   +    L      + + +
Sbjct: 2935 EELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEME 2994

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGK--- 475
             +    +A  + L+        E         +   +  + +  ++ L  +   K +   
Sbjct: 2995 EQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELD 3054

Query: 476  -LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-L 533
              ++K    E  L      +  +      +  ++   N +L ++   L     E +    
Sbjct: 3055 VQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRN 3114

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             E    R  +    +L +  ++              +    R+   Q   L++    L+ 
Sbjct: 3115 TEGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAE 3174

Query: 594  QKEEIEKQIAQVTAKGEA-----EKTAILISILHEVHIQIHQIESQE 635
             + E E+       K        EK   +   L E+  +  ++ + E
Sbjct: 3175 LRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTE 3221



 Score = 37.9 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 29/287 (10%), Positives = 84/287 (29%), Gaps = 11/287 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +      G  A E  +             E    +    +   +    L      + + +
Sbjct: 2830 EELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEME 2889

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGK--- 475
             +    +A  + L+        E         +   +  + +  ++ L  +   K +   
Sbjct: 2890 EQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELD 2949

Query: 476  -LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-- 532
              ++K    E  L      +  +      +  ++   N +L ++   L     E +    
Sbjct: 2950 VQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRN 3009

Query: 533  -LPEEIHQ-RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               ++  +  +      E+ +QL     +      T      ++    ++   + ++   
Sbjct: 3010 TDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAE 3069

Query: 591  LSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQE 635
            L  + EE+         + +   EK   +   L E+  +  ++ + E
Sbjct: 3070 LRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTE 3116



 Score = 37.9 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 29/287 (10%), Positives = 84/287 (29%), Gaps = 11/287 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +      G  A E  +             E    +    +   +    L      + + +
Sbjct: 3250 EELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEME 3309

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGK--- 475
             +    +A  + L+        E         +   +  + +  ++ L  +   K +   
Sbjct: 3310 EQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELD 3369

Query: 476  -LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-- 532
              ++K    E  L      +  +      +  ++   N +L ++   L     E +    
Sbjct: 3370 VQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRN 3429

Query: 533  -LPEEIHQ-RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               ++  +  +      E+ +QL     +      T      ++    ++   + ++   
Sbjct: 3430 TDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAE 3489

Query: 591  LSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQE 635
            L  + EE+         + +   EK   +   L E+  +  ++ + E
Sbjct: 3490 LRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTE 3536



 Score = 37.9 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 29/287 (10%), Positives = 84/287 (29%), Gaps = 11/287 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            +      G  A E  +             E    +    +   +    L      + + +
Sbjct: 1497 EELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEME 1556

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGK--- 475
             +    +A  + L+        E         +   +  + +  ++ L  +   K +   
Sbjct: 1557 EQLAELRAENEELRNTEGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELD 1616

Query: 476  -LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-- 532
              ++K    E  L      +  +      +  ++   N +L ++   L     E +    
Sbjct: 1617 VQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRN 1676

Query: 533  -LPEEIHQ-RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               ++  +  +      E+ +QL     +      T      ++    ++   + ++   
Sbjct: 1677 TDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTDGDKARELDVQNEKLHEMEEQLAE 1736

Query: 591  LSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQE 635
            L  + EE+         + +   EK   +   L E+  +  ++ + E
Sbjct: 1737 LRAENEELRNTDGDKARELDVQNEKLHEMEEQLAELRAENEELRNTE 1783


>gi|157818007|ref|NP_001101416.1| protein Hook homolog 1 [Rattus norvegicus]
 gi|149044517|gb|EDL97776.1| hook homolog 1 (Drosophila) (predicted) [Rattus norvegicus]
          Length = 728

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 34/343 (9%), Positives = 99/343 (28%), Gaps = 28/343 (8%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           DG               +   +   +     L   +D         +    +    +   
Sbjct: 233 DGSFDDPNTMVAKKYFHVQLQLEQLQEENYRLEAAKDDYRVHCEELEKQLIEFQHRN--- 289

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
            ++    E      +  D             + ++  + +      +R +++ L +  + 
Sbjct: 290 DELTSLAEETRALKDEIDVLRATSDKANKLESTVEVYRQKLQDLNDLRKQVKSLQETNMM 349

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPAI 497
                    ++  +    +   +   +            S R   L   +      H  +
Sbjct: 350 YMHNTVSLEEELKKANAARAQLETYKRQVQDLHTKLSSESKRADTLAFEMKRLEEKHETL 409

Query: 498 LQEQYQELADIRYDNNELQKLW-----SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           L+E+ + +          ++L          +          E +   +    + E+  +
Sbjct: 410 LKEKERLIEQRDTLKETNEELRCSKAQQDHLNQADSSATKSYENLAAEIMPVEYREVFIR 469

Query: 553 LDRQVRDAGLWSA-TTEANIVDVRQGYQQALA-----------LYKRFRLLSRQKEEIEK 600
           L  + +   L    T    I  +++  +Q                +R   L +Q E+++K
Sbjct: 470 LQHENKMLRLQQEGTENERIEQLQEQLEQKHRKMNELETEQRLSKERIGELQQQIEDLQK 529

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQEAMIE 639
            + +  +K E E ++ L   L     ++     +++ ++ +IE
Sbjct: 530 SLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQELIE 572


>gi|73988792|ref|XP_542484.2| PREDICTED: similar to Liprin-beta 2 (Protein tyrosine phosphatase
           receptor type f polypeptide-interacting protein binding
           protein 2) (PTPRF interacting protein binding protein 2)
           [Canis familiaris]
          Length = 871

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 55/192 (28%), Gaps = 26/192 (13%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLT-LINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           +  + S            L E   L   ++ HP        ++            +   L
Sbjct: 35  EPALASPASHANPFPVLHLVEDLRLALEMLEHPQERAALLSQIPG-----PTAAYIKESL 89

Query: 523 --FSDFVEQKYFLPEEIHQRLCERGFGELL------KQLDRQVRDAGLWSATTEANIVDV 574
              +          +E   RL       +L       Q++ Q           E + V +
Sbjct: 90  SQVNHHGAASNETYQERLARLEGDKESLILQVSVLTDQVEAQGEKIRDLEVCLEGHQVKL 149

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK------------GEAEKTAILISILH 622
               +           L  QK ++  +++++  K             +  K   L+  L 
Sbjct: 150 NAAEEMLQQELLSRTSLETQKLDLMTEVSELKLKLVGMEKEQREQEEKQRKAEELLQELR 209

Query: 623 EVHIQIHQIESQ 634
            + I++ ++E++
Sbjct: 210 HLKIKVEELENE 221


>gi|5031875|ref|NP_005563.1| prelamin-A/C isoform 2 [Homo sapiens]
 gi|34236|emb|CAA27174.1| unnamed protein product [Homo sapiens]
 gi|307108|gb|AAA36164.1| lamin C protein [Homo sapiens]
 gi|12653479|gb|AAH00511.1| Lamin A/C [Homo sapiens]
 gi|13111979|gb|AAH03162.1| Lamin A/C [Homo sapiens]
 gi|55957497|emb|CAI15521.1| lamin A/C [Homo sapiens]
 gi|119573382|gb|EAW52997.1| lamin A/C, isoform CRA_b [Homo sapiens]
 gi|119573384|gb|EAW52999.1| lamin A/C, isoform CRA_b [Homo sapiens]
 gi|190689641|gb|ACE86595.1| lamin A/C protein [synthetic construct]
 gi|190691003|gb|ACE87276.1| lamin A/C protein [synthetic construct]
          Length = 572

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ + ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|5803145|ref|NP_006779.1| ralA-binding protein 1 [Homo sapiens]
 gi|34098413|sp|Q15311|RBP1_HUMAN RecName: Full=RalA-binding protein 1; Short=RalBP1; AltName:
           Full=76 kDa Ral-interacting protein; AltName:
           Full=Dinitrophenyl S-glutathione ATPase; Short=DNP-SG
           ATPase; AltName: Full=Ral-interacting protein 1
 gi|974143|gb|AAB00103.1| RLIP76 protein [Homo sapiens]
 gi|15341887|gb|AAH13126.1| RalA binding protein 1 [Homo sapiens]
 gi|119622006|gb|EAX01601.1| ralA binding protein 1, isoform CRA_a [Homo sapiens]
 gi|119622007|gb|EAX01602.1| ralA binding protein 1, isoform CRA_a [Homo sapiens]
 gi|119622009|gb|EAX01604.1| ralA binding protein 1, isoform CRA_a [Homo sapiens]
 gi|119622010|gb|EAX01605.1| ralA binding protein 1, isoform CRA_a [Homo sapiens]
 gi|123981402|gb|ABM82530.1| ralA binding protein 1 [synthetic construct]
 gi|157928186|gb|ABW03389.1| ralA binding protein 1 [synthetic construct]
 gi|307684688|dbj|BAJ20384.1| ralA binding protein 1 [synthetic construct]
          Length = 655

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 75/256 (29%), Gaps = 35/256 (13%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-----QAIRDRLQQLFQKYI---- 440
            +                L      IK++  R  +      + ++  ++ L ++      
Sbjct: 373 LKQVMKPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGIKDLSKEERLWEV 432

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                  +   + A+ ++ +    + + S   +    ++ +  E  + + L     IL E
Sbjct: 433 QRILTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVINILLAQENEILTE 492

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           Q + LA  ++       L   + S                  +     L  ++       
Sbjct: 493 QEELLAMEQF-------LRRQIAS-----------------EKEEIERLRAEIAEIQSRQ 528

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILI 618
               + TE    +     +    L      L RQ EE+E +   +      E E    L 
Sbjct: 529 QHGRSETEEYSSESESESEDEEELQIILEDLQRQNEELEIKNNHLNQAIHEEREAIIELR 588

Query: 619 SILHEVHIQIHQIESQ 634
             L  + +Q  + E Q
Sbjct: 589 VQLRLLQMQRAKAEQQ 604


>gi|70999482|ref|XP_754460.1| Taz1-interacting factor 1 (TAF1) [Aspergillus fumigatus Af293]
 gi|73622221|sp|Q4WY31|ATG11_ASPFU RecName: Full=Autophagy-related protein 11
 gi|66852097|gb|EAL92422.1| Taz1-interacting factor 1 (TAF1), putative [Aspergillus fumigatus
           Af293]
          Length = 1264

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/216 (9%), Positives = 60/216 (27%), Gaps = 11/216 (5%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +   S+ +       F              + +   R          ++   +    +  
Sbjct: 521 QSQLSRPVSGNFNLEFPSSPASPYPDELSRRSSVSSRRMSANQSSEDKTLAQRIVTLEAE 580

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E   +  L       +   + L++              + +    Q+ F  E   +R
Sbjct: 581 LNAERETVQRLQK-----EAHAERLSNTDKIQEAQSTKRDLIDNLEARQREFDEE---RR 632

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LLSRQKEEIE 599
             E    +   + +    +    + + +    D  +   Q     +        +     
Sbjct: 633 YLEGELKKYRLRTEELEEELDRITDSRDHAKQDADERINQLETELQNLHIHTEEELHRAN 692

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             + Q+ A+   E++  L   ++E+  Q  +I++ E
Sbjct: 693 DLLEQMQAQKMTEES--LQQRINELEKQQSEIKATE 726


>gi|308159261|gb|EFO61803.1| Hypothetical protein GLP15_2168 [Giardia lamblia P15]
          Length = 1455

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 79/225 (35%), Gaps = 9/225 (4%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + I  + Q L ++     +      +      +  GP       ++++  L+        
Sbjct: 865  EEIAQQYQLLERERAVLETAAQVLTQDQGIDAEPVGPDPDQEIDNIIQAALNAPVPQLVD 924

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCE 543
              LL   N P     Q +         + L  +   L   ++ + Q      +   +   
Sbjct: 925  QALLNYFNAPEASALQGRVGPANDLLVSHLASVRDRLDAANERLNQAQMATSDYLDQARA 984

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ-- 601
                 L  +L++        ++  E    D R   Q  L L ++  L     +++++Q  
Sbjct: 985  TN-NNLTAELEQTKASLAHTNSFAEQLKRDNRVINQANLELGRQLELKEAVNQDLQRQLT 1043

Query: 602  --IAQVTAKG--EAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
              I ++   G  + E+ A ++ +L E  +  +Q+  +EA + G G
Sbjct: 1044 TVIGELNQLGPEKTEREAYILQLLTERELAANQLRVKEAEVVGLG 1088


>gi|291530025|emb|CBK95610.1| hypothetical protein EUS_02790 [Eubacterium siraeum 70/3]
          Length = 322

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 52  SFHCNDSKGFYYCFSCHVKG-DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK 110
           S   ++ K F+  +S    G + L +L  +   SF+++V+ L    G  L    P  +K+
Sbjct: 46  SLKMSNGKWFW--WSQGFGGYNALDYLIKVRNYSFMDAVEIL---TGKELANWTPPPKKE 100

Query: 111 EKIQTDLIRLIEVATD 126
           EK +  ++RL E   D
Sbjct: 101 EKNEPKVLRLPEKYQD 116


>gi|260814245|ref|XP_002601826.1| hypothetical protein BRAFLDRAFT_75956 [Branchiostoma floridae]
 gi|229287128|gb|EEN57838.1| hypothetical protein BRAFLDRAFT_75956 [Branchiostoma floridae]
          Length = 927

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/295 (9%), Positives = 85/295 (28%), Gaps = 26/295 (8%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
            +  +            +  +      E  +       E  +    L      ++D+  R
Sbjct: 337 ILNDHLAQGLLCQFRARVLSLQEQLGYEEGHGRALQLHEMRDELKKLTTDNLQLRDKNER 396

Query: 422 YYYS-QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            Y   + ++ +L Q+     T+ S    + ++      +     ++  + + +   +   
Sbjct: 397 LYQKVEQLQSKLNQMAGS-RTDLSSKLIFSEEEKLQVSKALVDLQIENNRIQEDYEAANF 455

Query: 481 SLR------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            L+      E  L+   +    + ++       +R    + ++L                
Sbjct: 456 ELKNKVLTLENELMEVTLQKDKLARDLRSTHDRLRTSEKDHKELADEYIILKTNYLALTK 515

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL--S 592
           E   ++      G  L  L               A I  +R    +      +   L   
Sbjct: 516 EHDREKARNEELGMELLNLVNATSHGRPVQGELTAEIDRLRHVVSRLSTHKPQDAYLGGE 575

Query: 593 RQKEEIEKQI-------------AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +++++EK +              +   + + +K       L ++  ++ + ++Q
Sbjct: 576 EERQQMEKNLFGERERMEEDRRRMKAQYEEDQDKLE---GKLKKLRRELQEAQAQ 627


>gi|194208939|ref|XP_001914691.1| PREDICTED: centromere protein E, 312kDa [Equus caballus]
          Length = 2700

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 106/296 (35%), Gaps = 31/296 (10%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
             +            +L+ E     D      TE       ++  +    +K+      + 
Sbjct: 1289 VEEVSDTQETMDELELVKEESKTKDSTTLASTETERLRLTEKLVKSPEEIKSLTEERDNL 1348

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            K+     Q  +++L++ F++ + +        +++   +++   +++++       +L +
Sbjct: 1349 KMVKEALQDEQEQLKEDFREALAKIQEAQDKQEESCNMKEEDNETKKIVSEME---QLKE 1405

Query: 479  KPSLREAALLLTLINHPAILQEQYQELAD---IRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            +   RE+ALL T +      +       D   +  + ++ Q+L   + S+  +Q     E
Sbjct: 1406 QLQARESALLRTEVEKLRWSERLQDSRDDTNSVAKERDDQQRLQEVILSE-SDQLKGNRE 1464

Query: 536  EIHQRLCERG-----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
             + + L                 E + +L   + + G   +T++  +    +        
Sbjct: 1465 IMAKHLESEEELGFARGHLKEQEETIAKLRENLSERGTELSTSQKELETTNEE------- 1517

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
                  L ++ +E  ++  Q  +  E  +T   +S L ++  Q+   E     IEG
Sbjct: 1518 ------LQKKIQEFHEEQEQFISIEENSETQEKMSELEQLKEQLKAEELSLRSIEG 1567



 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 71/217 (32%), Gaps = 13/217 (5%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
              I +    L                   +    K       +      +L K+   +  
Sbjct: 1800 DEIANMQMDLENSNTKLQEKIQELKANEHQLFKLKEDVSETQKKMSEIERLKKQFKAQSL 1859

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L    + +  + Q+ ++ L +++    E   L         E      +++   L E  
Sbjct: 1860 TLDKIEMENLNLAQKLHENLEEMKSVMKERDNLRK-----VEEALKLERDQLKANLQETI 1914

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQ 604
              +L  +  ++++ A +     +  I   R+   +         + L++ K+E++++I +
Sbjct: 1915 ARDL--ETQQELKIARMHLKEHQETIDKFRERVSEKTTQISNIQKDLNKAKDELQEKIRE 1972

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
            +  K        L+ +  +V     ++   E + + F
Sbjct: 1973 LQKKE-----LQLLKVKEDVSKTHXKMNETEGLKKQF 2004


>gi|159029660|emb|CAO87738.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 636

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 81/280 (28%), Gaps = 18/280 (6%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               +    + + ++         +  + E          +       L +    I   +
Sbjct: 163 FDLTKKQTTSLYSQIQTLEQDKALLQQELEKAEELRAKVADLEHKNQELSDLAAQIPSWQ 222

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    Q +   L    ++Y            + +    QK      +   L   +    
Sbjct: 223 SQ---IQTLEQNLAHQTEQYEQGQQEIASLQGQISGLEQQKK----SLSEDLAAIQTRSL 275

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +E   L   +     + +     A+      +L+     L +    +     E    
Sbjct: 276 SLGQECDNLTIKLQ--ETVAQVTAITAEKDSLGADLEAAKLELQALAARKGELSAELTTA 333

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                     L++L +         A ++A I D+    Q+   L ++      +  ++E
Sbjct: 334 AEKIADLEGQLQELTQL----PQQLADSQAKIADLEGQLQELTQLPQQLADSQAKIADLE 389

Query: 600 KQIAQVTAKGEA-----EKTAILISILHEVHIQIHQIESQ 634
            Q+ ++T   +      E  A L   LH++  +  Q+E+ 
Sbjct: 390 GQLQELTQLPQQLETYRENIANLEIQLHQLSAEKDQLEAT 429


>gi|1408194|gb|AAB03661.1| myosin heavy chain [Placopecten magellanicus]
          Length = 1950

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 82/299 (27%), Gaps = 40/299 (13%)

Query: 376  VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
               +      ++ E  NR+    D++ ++   L     +++    +       + RLQQ 
Sbjct: 1364 NNEIQQWRSKFESEGANRTEELEDQKRKILGKLSEAEQNMEAANAKASALDKAKSRLQQE 1423

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-AALLLTLINH 494
             +    E         +  + +     +    QS +   +   + S +E       L   
Sbjct: 1424 LEDLSIEVDRANANVNQMEKKQRAFDKTTSEWQSKVNSLQSELENSQKESRGYSAELYRI 1483

Query: 495  PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-------------YFLPEEIHQRL 541
             A ++E    +  +R +N  L      L     E                   EE+   L
Sbjct: 1484 KASVEEYQDSIGSLRRENKNLADEIHDLTDQLSEGGRSSHELDKARRRLEMEKEELQAAL 1543

Query: 542  CERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR------------ 587
             E      +   ++ R   +        +  I +  + +      ++R            
Sbjct: 1544 EEAEGALEQEEAKVMRAQLEIATVRNEIDKRIQEKEEEFDNTRRNHQRALESMQASLEAE 1603

Query: 588  ----------FRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHEVHIQIHQIESQ 634
                       + L +   E+E  +           +        + E+   I + + Q
Sbjct: 1604 AKGKADALRIKKKLEQDINELEVALDASNRGKAEMEKTVKRYQQQIREMQTSIEEEQRQ 1662



 Score = 37.6 bits (85), Expect = 6.2,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 79/234 (33%), Gaps = 18/234 (7%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + I+ +++        +        +K+ + +  K      +Q  + +         +E
Sbjct: 935  LEGIKKKMEGDNANLKKDIGELEHSLQKSEQEKAHKDNQISTLQGEMSQQDEHIGKLNKE 994

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCE 543
               L          ++    L       N L KL + L     E +     E+  +   E
Sbjct: 995  KKALE------EANKKTSDSLQAEEDKCNHLNKLKAKLEQALDELEDNLEREKKVRGDVE 1048

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-------LSRQKE 596
            +   ++ + L     +             +VR+   +   L  +          L R+ +
Sbjct: 1049 KAKSKVEQDLKSTQENVEDLERVKRELEENVRRKEAEITTLNSKLEDEQNLVSQLQRKIK 1108

Query: 597  EIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQEAMIEGFGKMSGRL 648
            E++ +I ++  + EAE+ A         E++ ++ ++   E + E  G  S ++
Sbjct: 1109 ELQARIEELEEELEAERNARSKVEKQRAELNRELEEL--GERLDEAGGATSAQI 1160


>gi|118362960|ref|XP_001014708.1| DNA-directed RNA polymerase, omega subunit family protein
            [Tetrahymena thermophila]
 gi|89296472|gb|EAR94460.1| DNA-directed RNA polymerase, omega subunit family protein
            [Tetrahymena thermophila SB210]
          Length = 4331

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 38/330 (11%), Positives = 119/330 (36%), Gaps = 21/330 (6%)

Query: 323  GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382
             +D G +       ++    I G +      +  ED    ++   +   +   +++    
Sbjct: 1507 HNDSGKKQNQSIDQIINDQDIDGLQNKRNQQNSFEDLQERVKELEEENNDLREIQNE--- 1563

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHI-KDQKLRYYYSQAIRDRLQQLFQKYIT 441
                +++ +       +E  +L+  ++     I K+Q       Q +++ +  + Q    
Sbjct: 1564 RDCLQQQIQEIIDKNKEETDQLQSTVRLLTQQIQKNQIDSEKIIQNLQNEIGSMTQFIKQ 1623

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS-----KKPSLREAALLLTLINHPA 496
            +     +   ++ +   +     +   + +   +        +   +   L+    N   
Sbjct: 1624 QEQLIQQQNAEHDQKEIEFRQIIKEKDNYIFTQRDQIEQITDQIKEKNNQLIQMQENIEE 1683

Query: 497  ILQEQYQEL----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFGELLK 551
            + Q   Q+L      I   N   Q     L     E++ +    +     + +   + L 
Sbjct: 1684 LKQNYEQQLQINNDQISNSNQNFQIQIENLQKLREEEEKYQNSNLSDLNNQIQELNQALS 1743

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQ-ALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            Q + ++++  +  +  + +  +  +  +Q  L ++++   L  +  +++++IA + +   
Sbjct: 1744 QKEEELQEINMKQSVIQQSYENKIKELEQNCLQIFEQKEELQIRISQLDEEIADLKSVEK 1803

Query: 608  ---KGEAEKTAILISILHEVHIQIHQIESQ 634
               + + E T  L + + E+  QI+Q+  Q
Sbjct: 1804 KSFEEQTESTKSLENTIKELENQINQLNEQ 1833


>gi|71665963|ref|XP_819946.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70885269|gb|EAN98095.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1256

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 60/198 (30%), Gaps = 18/198 (9%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           ++  ++     R+    ++    +  S +       +  L K+    + ++      H  
Sbjct: 516 EEEASKQIEGRRFVASTSQKMVYQDESPKKTAEKENQWFLEKECEQLQRSIARLRSEHED 575

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           + +E   ++           KL   L +   +Q     E +   L E       ++L   
Sbjct: 576 LRRELETQVIRSE-------KLEMSLVAKEEQQAAEREEWL---LQENKLKNRQEKLAAV 625

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           +R          +    + Q  +   A  KR   L  +    +     +   G       
Sbjct: 626 LRQVHR---HVSSTAEKLEQSEKDLEASRKRCCALETELAAAK-----MEVLGLKATCTE 677

Query: 617 LISILHEVHIQIHQIESQ 634
            +     +  Q+ Q+ES+
Sbjct: 678 HLEEGQRLQKQLEQLESE 695


>gi|320581827|gb|EFW96046.1| hypothetical protein HPODL_2329 [Pichia angusta DL-1]
          Length = 339

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 72/209 (34%), Gaps = 5/209 (2%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
                L +  ++         R   +    ++      RL    +   +L ++ S  E  
Sbjct: 54  EFSAELNRQLKEKEERILRNKRIRSREEPLKENANARPRLELEKVELQELRRRVSKLEGL 113

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
           L    +    + ++  +E  ++    +EL++      S    Q+    E + +R  E   
Sbjct: 114 LEDERLRRGLLERKLGEERRELELQRDELER-RKQDLSAHENQQESRIERLQRRYEEIIQ 172

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
                +++++  +A L           + Q       L ++   L    E  E +I ++ 
Sbjct: 173 ESESWKIEKKRLEAKL--DAKNMEYRQLEQKLGDQRLLQRKTEKLESVIERQETEIRKLK 230

Query: 607 A--KGEAEKTAILISILHEVHIQIHQIES 633
              + + E+   L+    ++  ++  +++
Sbjct: 231 NMLRAKDEECEDLLVKNRQLKRKVQTLQN 259


>gi|310794825|gb|EFQ30286.1| hypothetical protein GLRG_05430 [Glomerella graminicola M1.001]
          Length = 1247

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 82/271 (30%), Gaps = 17/271 (6%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +   +   + AF   + +++  +      E + +S         +         +++   
Sbjct: 625 EQLSKSRDREAFLLRVEDNMRQISDKLN-EMQVKSAEANALPTSIIERFDKITAYLQSAS 683

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                   +R  L    ++ I   +   R        ++Q   +Q   Q    +      
Sbjct: 684 WADL-GDEMRQALNNFQRELIPHSTIEDRLQSLEKTVQNQAVLAQTERQKQQEQLLQQIS 742

Query: 480 PSLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              +E   L   +    I + E    ++++     +LQ+L + +      Q     EEI 
Sbjct: 743 EEKKETQNLFLSLQSRDIQMTEISNAVSEL---TRKLQELKASV--ALASQTGTTSEEIR 797

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                    EL    D QV +     A  +          ++      +     RQK E+
Sbjct: 798 S------LQELFLSRDHQVSE---MQAELKIQREAQEVTLRELRERLCQAEEDVRQKSEL 848

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            K + + T   +    A       E+ +++ 
Sbjct: 849 VKDLQRKTLTEKDGYAAKEQEKKQELELRLR 879


>gi|296089166|emb|CBI38869.3| unnamed protein product [Vitis vinifera]
          Length = 815

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/313 (10%), Positives = 88/313 (28%), Gaps = 15/313 (4%)

Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRGED-PDSFIRCYGKTA-FEKLIVESLPLVDML 385
                  I+              ++    ED P +F++       +           + +
Sbjct: 109 AEDTRFQIESAAVSANHCKIYRKMVAYEDEDHPSAFLKDTSTNGTYLNWEKLKKNSPESM 168

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
                       PD         ++    +K   L     +   + L+   ++      G
Sbjct: 169 LHHGDIISFAAPPDHEIAFTFVYRDV---LKSSPLNVAVPKRKAEELRIENKRIKGIGIG 225

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
                      R  +  +  L +    +            A +     H   ++E  + +
Sbjct: 226 APEGPISLDDFRSLQRSNTELRKQLENQVLTIDTLQNENRAAIE---RHENEMKELKELV 282

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
           +      ++LQ+L   L     E          Q+       E L    +   +A     
Sbjct: 283 SKP--YVDQLQELHHLLEVKQKELVEVNRILAEQKHAMSDLNERLSASMQSCAEANEIMT 340

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE---KTAILISILH 622
           + +A+I  +     +     +R     +   +++  I +  ++ + E    + + +    
Sbjct: 341 SQKASISKLEARLDEEQD--QRMEEREKATADLKAAIHRAQSEAQEEIKRLSEVALRRER 398

Query: 623 EVHIQIHQIESQE 635
           E+   I++++  E
Sbjct: 399 ELQEVINRLQESE 411


>gi|220925876|ref|YP_002501178.1| hypothetical protein Mnod_6050 [Methylobacterium nodulans ORS 2060]
 gi|219950483|gb|ACL60875.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
          Length = 375

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 7/119 (5%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +        + + L      + L +L+ +  D  LW    EA    +R+   Q  
Sbjct: 5   IEQLSDAAKQSIGLLRRHLDWDTADKRLAELNARSEDPALW-NDPEAAQKVMRER-TQLE 62

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH-----IQIHQIESQEA 636
                 R L +  E+    I     +G+          +  V       QI  + + EA
Sbjct: 63  EAVSAIRRLEQGLEDAATLIELGEMEGDEASIREGEEQIRAVQAEAARRQIETLLAGEA 121


>gi|206900106|ref|YP_002250615.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12]
 gi|206739209|gb|ACI18267.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12]
          Length = 894

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 67/215 (31%), Gaps = 17/215 (7%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y   + +R++Q+  + I        +  +           +    S  +        +  
Sbjct: 333 YRGELEERVKQILDEIIANQDSLIIFIDEIHTIVGAGAAGEG---SLDIANAFKPALARG 389

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRL 541
           E  L+         L E  + +      +  L++ +  +F     VEQ   +   +  R 
Sbjct: 390 ELHLIGA-----TTLNEYQKYIEK----DPALERRFQPIFVSEPTVEQTIMILRGLRDRF 440

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR--QKEEIE 599
                 ++  +      +      T             QA A   R  + SR  + +E+E
Sbjct: 441 EAHHKVKITDEAIIAAAELSDKYITNRYLPDKAIDLIDQA-AARVRIMMTSRPAEIQELE 499

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +I  +  + E   +        E+  QI ++E +
Sbjct: 500 AKIQSLKREQEYASSRKQYDRAKELEEQIQKLEKE 534


>gi|187939940|gb|ACD39076.1| hypothetical protein PACL_0288 [Pseudomonas aeruginosa]
          Length = 821

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 69/212 (32%), Gaps = 9/212 (4%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           Q L     +E     R       + +     Q       ++ +  +     EA L     
Sbjct: 152 QALLAGKKSELLDTERSLNLREANAEAGYAEQNEHALRQLEKRQRQLTQQHEAHLQQLQD 211

Query: 493 NHPAI---LQEQYQELADIRYDNNELQKLWSFLFSDFV---EQKYFLPEEIHQRLCERGF 546
               +   L +  + LA+++++  E +   +          +Q+    +    RL     
Sbjct: 212 EKRQLDGELSQVARRLAEVKFNCTEAEAERTRQLDQREHEIQQRKIELDRARSRLDREWA 271

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ---KEEIEKQIA 603
                + D + R A    A   ++   + +  +Q    + +   L  Q    +E+++ + 
Sbjct: 272 EIKAAESDLEQRIATEMEAERASHAQSISRMERQRDNAWSKAEGLKEQLADIQELKQVLG 331

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           + +A    E+   L      +   + Q ++ E
Sbjct: 332 EQSAAEILEQLESLRQENRALKRSLEQSDTAE 363


>gi|187956525|gb|AAI50738.1| Myosin, heavy polypeptide 8, skeletal muscle, perinatal [Mus
            musculus]
          Length = 1937

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQSTLDAEIRSRNDALRVKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1624 DLNEM-EIQLNHANRLAAESLRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAI 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828



 Score = 37.6 bits (85), Expect = 6.1,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 82/257 (31%), Gaps = 35/257 (13%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
             EN      ++  + E  + N I+ I+D++      Q     LQ   ++   E       
Sbjct: 1072 IENDKQQLDEKLKKKEFEISNLISKIEDEQAVEIQLQKKIKELQARIEELEEEIEAERAS 1131

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
              K  + R         +   L +   +                          ++   +
Sbjct: 1132 RAKAEKQRSDLSRELEEISERLEEAGGATSA-----------------------QVEMNK 1168

Query: 510  YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
                E QKL   L    ++ +        ++       EL +Q+D   R           
Sbjct: 1169 KRETEFQKLRRDLEEATLQHEA--TAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSE 1226

Query: 570  NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI- 628
              +++      A A+ K    L +    +E Q++++ +K   E+   LI+ L     ++ 
Sbjct: 1227 LKMEIDDLSSNAEAIAKAKGNLEKMCRTLEDQVSELKSK--EEEQQRLINELTAQRARLQ 1284

Query: 629  -------HQIESQEAMI 638
                    Q++ ++A++
Sbjct: 1285 TEAGEYSRQLDEKDALV 1301


>gi|55622|emb|CAA36264.1| alpha-internexin [Rattus norvegicus]
          Length = 500

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/312 (9%), Positives = 78/312 (25%), Gaps = 30/312 (9%)

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           G     +  S G D         +    +   +               +      +   L
Sbjct: 63  GLAYRRLPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRAL 122

Query: 405 EIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           E  L        +   +   + + +R+   +L +              ++    + +   
Sbjct: 123 EAELAALRQRHAEPSRVGELFQRELRELRGELEEASSARAQALLE---RDGLAEEVQRLR 179

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK------ 517
            R  + S  +    +    ++  +    +    + ++    L ++ +      +      
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELQ 239

Query: 518 -----------------LWSFLFSDFVEQKYFLPEEI--HQRLCERGFGELLKQLDRQVR 558
                            L S L     + +    + +   +   +  F  L +Q  R   
Sbjct: 240 ASSQAAAEVDVAVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARSTE 299

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
                          ++    +   L      L RQ  E+E++       G  +    L 
Sbjct: 300 AIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEER-HSAEVAGYQDSIGQLE 358

Query: 619 SILHEVHIQIHQ 630
           S L     ++ +
Sbjct: 359 SDLRNTKSEMAR 370


>gi|15612666|ref|NP_240969.1| class III stress response-related ATPase [Bacillus halodurans
           C-125]
 gi|10172715|dbj|BAB03822.1| class III stress response-related ATPase [Bacillus halodurans
           C-125]
          Length = 813

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 74/216 (34%), Gaps = 16/216 (7%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWK----KNARHRDQKGPSQRLMQSSLVKGKLS-- 477
           Y     DRL+++  +     +      +      A   +    +  +++ SL +G+L   
Sbjct: 255 YRGEFEDRLKKVMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCI 314

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +L E       I   A L+ ++Q +       +E  ++   L   +           
Sbjct: 315 GATTLDEY---RKYIEKDAALERRFQPIQVNEPSLDESIQILKGLRDRYEAHHRVT---- 367

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              + +    E +K  DR ++D  L     +       +   ++       + L ++ EE
Sbjct: 368 ---ITDEAIEEAVKLSDRYIQDRFLPDKAIDLIDEAASKVRLRSYTAPPNLKELEQKLEE 424

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             K+        E EK A L      +  ++ Q+++
Sbjct: 425 TRKEKDAAVQSQEFEKAASLRDSEQRIREELDQMKN 460


>gi|322514219|ref|ZP_08067281.1| cell division protein [Actinobacillus ureae ATCC 25976]
 gi|322119912|gb|EFX91921.1| cell division protein [Actinobacillus ureae ATCC 25976]
          Length = 1496

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 78/236 (33%), Gaps = 10/236 (4%)

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +N ++ Q+    Y   + +  ++L ++ I       +      R  D     + L    
Sbjct: 367 VMNALRHQEKIERYQDEVAELNEKLEEQQIALEEVSEQVETAQVRADDADDQVEELRSQM 426

Query: 471 LVKGKLSKKPSLRE---AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
               +       R       +  L     +    + +L ++   + E       L     
Sbjct: 427 ADYQQALDAQQTRALQYQQAIAALEKAKQLCGLPHLDLHNVEDYHAEFAAQADDLTDQVF 486

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALY 585
           E +  L      +       EL+ ++  ++  +  W+          D +    QA+AL 
Sbjct: 487 ELEQRLSVSDMAKTQFEKAYELVCKISGEIDRSEAWNEARSLLTAFTDQKIQATQAVALR 546

Query: 586 KRFRLLSRQK---EEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEA 636
           ++   L ++    +  E+ +A+   K +   E    L S   +   ++  +E++ A
Sbjct: 547 QKLADLEQRLHQQQNAERLLAEFNQKAQTQFETAEELESYFEQQQARLEDVEAELA 602


>gi|317373411|sp|A7E2Y1|MYH7B_HUMAN RecName: Full=Myosin-7B; AltName: Full=Antigen MLAA-21; AltName:
            Full=Myosin cardiac muscle beta chain; AltName:
            Full=Myosin heavy chain 7B, cardiac muscle beta isoform;
            AltName: Full=Slow A MYH14
          Length = 1941

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 86/279 (30%), Gaps = 13/279 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
              +  +  +   L   D        N        +A L+   +     ++ +K       
Sbjct: 1571 ELSQVKAEVDRKLAEKDEECANLRRNHQRAVESLQASLDAETRARNEALRLKKKMEGDLN 1630

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS---LR 483
             +  +L    ++     +       +    +  +   QRL      + +  ++ +     
Sbjct: 1631 DLELQLGHATRQATEAQAATRLMQAQLKEEQAGRDEEQRLAAELHEQAQALERRASLLAA 1690

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E   L   +      +   ++  ++      L  L S       ++K    +    +L  
Sbjct: 1691 ELEELRAALEQGERSRRLAEQ--ELLEATERLNLLHSQNTGLLNQKKKLEAD--LAQLSG 1746

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   ++ + + +     +        ++++    +  L +  + L +   E++ ++ 
Sbjct: 1747 EVEEAAQERREAEEKAKKAITDAA-MMAEELKKEQDTSAHLERMKKTLEQTVRELQARLE 1805

Query: 604  QVTAK---GEAEKTAILISILHEVHIQI--HQIESQEAM 637
            +       G  ++   L + + E+  ++   Q +  EA+
Sbjct: 1806 EAEQAALRGGKKQVQKLEAKVRELEAELDAEQKKHAEAL 1844


>gi|308486978|ref|XP_003105685.1| hypothetical protein CRE_17833 [Caenorhabditis remanei]
 gi|308255141|gb|EFO99093.1| hypothetical protein CRE_17833 [Caenorhabditis remanei]
          Length = 374

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 81/218 (37%), Gaps = 10/218 (4%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           Q +++  + + +  I+E         K  +    K     +   ++ K  + KK    E 
Sbjct: 105 QILKELCRNVDETEISECQKTKELQIKLVQEEAAKDEEYTVEFQNVEKQNMDKKKEAMEE 164

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-R 544
                 I H     +Q + +  +  +N + +     + +  +  +     +I+ ++ E +
Sbjct: 165 KH-QLAIRHNEEDLKQQRAIHLMEINNEKCR-----MSAAILNMRNGEIIQINSKISEMQ 218

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIA 603
                +     ++  + L    +       R      L  L+ RFR +S   +EIE+ + 
Sbjct: 219 NLSTDISSFFNELIVSVLPIDESSTLENIQRTHLISNLNGLHLRFRDMSTDIQEIEQILP 278

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           ++     +E+   L + L ++   I  I    A I+GF
Sbjct: 279 KIGQ--NSEEVNQLKNTLRQLKKSIRSITFCTAEIQGF 314


>gi|308512455|ref|XP_003118410.1| CRE-LFI-1 protein [Caenorhabditis remanei]
 gi|308239056|gb|EFO83008.1| CRE-LFI-1 protein [Caenorhabditis remanei]
          Length = 2356

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/308 (9%), Positives = 84/308 (27%), Gaps = 47/308 (15%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
                    ++ +   L     L + + E       + R      +   +     +    +
Sbjct: 1721 NLQDTEEEKRALESRLQSAKTLLRSQEEALKQRDEERRQMKSKMVAAELQARGKEAQLRH 1780

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             ++ +++ L+       T+        ++    R Q     R   S   K +L       
Sbjct: 1781 LNEQLKN-LRTDLDNAQTDIRSLRDKEEQWDSSRFQLETKMRESDSDSNKLQLQIASFES 1839

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDN-------NELQKLWSFLFSDFVEQKYFLPEE 536
            E  +L          ++  +    +R  +       ++  KL   L      +       
Sbjct: 1840 ERQILT---------EKIKELDGALRLSDSKVQDMKDDTDKLRRELSKAESVENELRKTI 1890

Query: 537  IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
              Q      +  L  QL     +    +   +    ++     +     +R   ++ +  
Sbjct: 1891 DIQSKTSHEYQLLKDQLLNTQNELNGANTRKQQLENELLNARSEVRDYKQRVHDVNNRVA 1950

Query: 597  EIEKQIAQVTAKGE------------------------------AEKTAILISILHEVHI 626
            E+++Q+    ++                                  +  + +  L ++  
Sbjct: 1951 ELQRQLQDANSEKNRVEDRFLSVEKVVNTMRTTETDLRQQLETAKNEKRVALKELEDIKR 2010

Query: 627  QIHQIESQ 634
            ++ Q+E++
Sbjct: 2011 RLAQLENE 2018



 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQV 605
             E ++++++ + D        E  I ++   +++ L   +     L R+  E+E +++Q+
Sbjct: 1057 KERIERIEKNILDRYHDDELAEHKIREINDRWKRELERLENDKDDLERRIRELEDELSQI 1116

Query: 606  TAKGEA------EKTAILISILHEVHIQIHQI 631
                +       E      + + ++   I  +
Sbjct: 1117 GRGNDKTENDITELKRKHAAEIDKLKSDISAL 1148


>gi|296228009|ref|XP_002807710.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein DZIP1L-like
           [Callithrix jacchus]
          Length = 767

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 77/218 (35%), Gaps = 8/218 (3%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            +R  +Q+      +E     +         + +   +        + +  ++  L+EA 
Sbjct: 180 FLRGHIQRRHAGLDSEGKQKKQEQPVEEVLEELRAKLKWTQGELEAQREAERQRQLQEAE 239

Query: 487 LL--LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           ++    +       + + QE   +  + ++L+K++   F +   Q   L E++       
Sbjct: 240 IIHQREIEAKKEFDEWKQQEWTKLYGEIDKLKKIFWDEFKNVANQNSSLEEKLRALQSHS 299

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ----KEEIEK 600
                L  L  +  +  L  A     + +  +   Q +   ++ + L  +    K E+++
Sbjct: 300 VMESNLGSLRNEESEEWLHQARELQALRE--KTEIQKMEWKRKMKELHEEHVAEKRELQE 357

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           +  ++ A    ++         ++     Q++ Q  +I
Sbjct: 358 ENQRLQASLSQDQKKAAAQSQRQISALRAQLQEQARII 395


>gi|296201254|ref|XP_002747956.1| PREDICTED: myosin-4 [Callithrix jacchus]
          Length = 1940

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 84/277 (30%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  ++   +    +       +      ELE   K     ++D +      
Sbjct: 1353 EEEQEAKGELQRAMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1412

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1413 NSKCASLEKTKQRLQNEVEDLMIDVERSNAACIALDKKQRNFDKVLAEWKQKYEETQAEL 1472

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+  S L     E         
Sbjct: 1473 EASQKESRSLSTELFKVKNAYEESLDHLETLKRENKNLQQEISDLTEQIAEGGKH----- 1527

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +A++ +     +       R   +  +  +
Sbjct: 1528 ------------IHELEKVKKQIEHEKSELQASLEEAEASLEHEEGKILR---IQLELNQ 1572

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1573 VKSEIDRKIAEKDEEIDQLKRNHLRVVESMQSTLDAE 1609



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 80/271 (29%), Gaps = 13/271 (4%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1566 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHLRVVESMQSTLDAEIRSRNDALRIKKKMEG 1625

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K  L  A     
Sbjct: 1626 DLNEM-EIQLNHANRQAAEAIRNLRNTQGILKDTQLHLDDAIRGQDDLKEQLAMAERRAN 1684

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
            L+       E  +  A +       +     L       +    +       ++     +
Sbjct: 1685 LMQ-----AEVEELRASLEQTERSRKMAEQELLDACERVQLLHTQNTSLINTKKKLETDI 1739

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQVT 606
             Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  + 
Sbjct: 1740 SQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDLQ 1799

Query: 607  AKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
             + +  +   L      + ++  ++ ++E++
Sbjct: 1800 HRLDEAEQLALKGGKKQIQKLEARVRELENE 1830


>gi|261204035|ref|XP_002629231.1| spindle-pole body protein [Ajellomyces dermatitidis SLH14081]
 gi|239587016|gb|EEQ69659.1| spindle-pole body protein [Ajellomyces dermatitidis SLH14081]
          Length = 1236

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 74/242 (30%), Gaps = 17/242 (7%)

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
                   +   H +D   R      I +RL           +       ++    ++  
Sbjct: 491 KARMQDDIDLAQHERDIARRE--RDDISERLHHADDDIRNGENAKDVLKTRHDALTNESA 548

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
             QR +  +  +    ++    E      + +   +  +   +L  +   ++E++ L   
Sbjct: 549 SLQRDLAQAKTRISNLEEQIEAERD--QYMNDTDKLRLQHRNQLDQL---HDEIESLKHD 603

Query: 522 LFS----DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           +         ++  +   +    L +    +      R +        T  +    ++  
Sbjct: 604 IEDREGQHATDRDRWDSLKRSLELQKEKVEQQAAGYKRTIDKLQNVETTLSSREDKLQNI 663

Query: 578 YQQALALYKR-FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +     + +   LL+RQ +E+   IA      E+++       L  V  ++     +E+
Sbjct: 664 IESEKQRHLQDEELLNRQIKELNDDIASKRQAAESQR-----QELLSVKEELRAARREES 718

Query: 637 MI 638
            +
Sbjct: 719 SL 720



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 92/322 (28%), Gaps = 15/322 (4%)

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFE 372
              R +   + DD   R  +   D+                   E               
Sbjct: 502 QHERDIARRERDDISERLHHADDDIRNGENAKDVLKTRHDALTNESASLQRDLAQAKTRI 561

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
             + E +      +  +T+       ++  +L   +++  + I+D++ ++   +   D L
Sbjct: 562 SNLEEQIEAERDQYMNDTDKLRLQHRNQLDQLHDEIESLKHDIEDREGQHATDRDRWDSL 621

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           ++  +    +       +K+          +    +  L     S+K            +
Sbjct: 622 KRSLELQKEKVEQQAAGYKRTIDKLQNVETTLSSREDKLQNIIESEKQRH---------L 672

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
               +L  Q +EL      N+++        S   E      E    R  E    E L+ 
Sbjct: 673 QDEELLNRQIKEL------NDDIASKRQAAESQRQELLSVKEELRAARREESSLREKLQA 726

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           L+  +           A   + ++     L    +     RQ        A +       
Sbjct: 727 LEDDIVVLQATLEEERAFAGNQQKSGASDLEKQLQAANKERQVARDNLANANIEIHNLRM 786

Query: 613 KTAILISILHEVHIQIHQIESQ 634
            +A L +   E+  QI +I+ Q
Sbjct: 787 ASAELEAERDELQSQIRRIQGQ 808


>gi|269784743|ref|NP_955396.2| leucine zipper putative tumor suppressor 1 [Mus musculus]
 gi|187952207|gb|AAI39353.1| Leucine zipper, putative tumor suppressor 1 [Mus musculus]
 gi|187954279|gb|AAI39351.1| Leucine zipper, putative tumor suppressor 1 [Mus musculus]
          Length = 599

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 73/212 (34%), Gaps = 13/212 (6%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  R +  +       Q F++            +  ++ +     SQR  Q   ++    
Sbjct: 279 KLQRSFDEKEFAS--GQTFEERPRRTRDELECLEPKSKLKPPSQKSQRTQQVLQLQVLQL 336

Query: 478 KKPSLREAALLLTLINHPAILQEQYQ--ELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           ++   +    L +L+    +L+ + +  E     +    L++         V QK     
Sbjct: 337 QQEKRQLRQELESLMKEQDLLETKLRSYEREKTNFA-PALEE-----TQWEVCQKSGEIS 390

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            + Q+L E       K  +     A L     + + ++++    Q L    R + L  + 
Sbjct: 391 LLKQQLKESQLEVNTKASEILSLKAQLKDTRGKLDGMELKT---QDLESALRTKGLELEV 447

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            E E Q  +  A+   EK  +L   L E+  Q
Sbjct: 448 CENELQRKKNEAELLREKVNLLEQELMELRAQ 479


>gi|167950147|ref|ZP_02537221.1| hypothetical protein Epers_28289 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 195

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 62/182 (34%), Gaps = 12/182 (6%)

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
                   E  L   + N      E    +++++      Q   +       + +  L E
Sbjct: 2   QPPGADKAEMELRRLMDNEKQAEGEFEARISELQEALEAAQTEKARAREQVAQAELRLRE 61

Query: 536 EIHQRLCERGF----GELLKQLDRQVRDAGLWSATTEANIVDV-RQGYQQALALYKRFRL 590
              + L          + + +L + +       +  + ++ D  R+  + A     R   
Sbjct: 62  ADERNLELESELDRKKQHVSELSQSLTQVEAQKSGADVSLQDAKREQQEHAEQYQSRLAD 121

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ------EAMIEGFGKM 644
           L +   +++ Q+A    + +AE+       +    ++I ++ES       ++ I+G    
Sbjct: 122 LEQDLRQLQGQLASTQRELDAEREQHT-QDMAASQLRIEELESTLLEVESQSRIDGETDS 180

Query: 645 SG 646
           SG
Sbjct: 181 SG 182


>gi|154757413|gb|AAI51766.1| EIF6 protein [Bos taurus]
          Length = 828

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|126308743|ref|XP_001371577.1| PREDICTED: similar to myosin, heavy polypeptide 1, skeletal muscle,
            adult isoform 2 [Monodelphis domestica]
          Length = 1908

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1534 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQSTLDAEIRSRNDAIRIKKKMEG 1593

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1594 DLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQIHLDDAL-----RGQEDLKEQ--LAM 1646

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1647 VERRANLLQAEIEELRATLEQTERSRKVAEQELLDASERVQLLHTQNTSLINTKKKLETD 1706

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1707 ISQIQGEMEDMVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1766

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1767 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1798


>gi|114681595|ref|XP_001160715.1| PREDICTED: myosin, heavy polypeptide 7B, cardiac muscle, beta isoform
            2 [Pan troglodytes]
          Length = 1939

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 86/279 (30%), Gaps = 13/279 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
              +  +  +   L   D        N        +A L+   +     ++ +K       
Sbjct: 1569 ELSQVKAEVDRKLAEKDEECANLRRNHQRAVESLQASLDAETRARNEALRLKKKMEGDLN 1628

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS---LR 483
             +  +L    ++     +       +    +  +   QRL      + +  ++ +     
Sbjct: 1629 DLELQLGHATRQATEAQAATRLMQAQLKEEQAGRDEEQRLAAELHEQAQALERRASLLAA 1688

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E   L   +      +   ++  ++      L  L S       ++K    +    +L  
Sbjct: 1689 ELEELRAALEQGERSRRLAEQ--ELLEATERLNLLHSQNTGLLNQKKKLEAD--LAQLSG 1744

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   ++ + + +     +        ++++    +  L +  + L +   E++ ++ 
Sbjct: 1745 EVEEAAQERREAEEKAKKAITDAA-MMAEELKKEQDTSAHLERMKKTLEQTVRELQARLE 1803

Query: 604  QVTAK---GEAEKTAILISILHEVHIQI--HQIESQEAM 637
            +       G  ++   L + + E+  ++   Q +  EA+
Sbjct: 1804 EAEQAALRGGKKQVQKLEAKVRELEAELDAEQKKHAEAL 1842


>gi|97888|pir||A33939 Fc gamma (IgG) receptor II precursor - Streptococcus sp.
           (fragment)
 gi|552003|gb|AAB95296.1| Fc-receptor protein precursor [Streptococcus pyogenes]
          Length = 405

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 81/286 (28%), Gaps = 15/286 (5%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              +  +      K   +++  V   +              R      L   +  +  + 
Sbjct: 41  AETVGRFSDEQVRKAREKAIEDVFDGYTGARSVYQSGNLPNRLTPTK-LSKLMQQMYKET 99

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           L+    + +    + L      +      Y K+  + +       +    +L        
Sbjct: 100 LQK--KEELDTLSKALTHTIEKKIESENAYKKELGQLKAAAEAEAQKALDALNNKNKQIS 157

Query: 480 PSLREAALLLTLIN-HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-----QKYFL 533
               E A L   I  +   +Q   +E+A       EL    S L +   E     Q+   
Sbjct: 158 DLTNENAQLKEAIEGYVQTIQNASREIAA---KQQELAAAKSQLEAKNAEIEALKQQDAS 214

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             E   +L       L   L    R+     A  +    +  +   Q   L        R
Sbjct: 215 KTEEIAKLQSEA-ATLENLLGSAKRELTDLQAKLDTATAEKAKLESQVTTLENLLGSAKR 273

Query: 594 QKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAM 637
           +  +++ ++    A+ E    + A L   L     ++  ++++ A 
Sbjct: 274 ELTDLQAKLDAANAEKEKLQSQAAALEKQLEATKKELADLQAKLAA 319


>gi|328553015|gb|AEB23507.1| hypothetical protein BAMTA208_06660 [Bacillus amyloliquefaciens
           TA208]
          Length = 354

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 20/164 (12%)

Query: 204 NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN----LYNFFGALNYLQ 259
           +R+ FP+ +  GQ+I   GR +        +N     L+ +  N     YN   AL +++
Sbjct: 187 DRVTFPVHNKSGQLIGVKGRYIGNDP---VVNDKYKYLYIQPCNKSIEFYNLHRALPHIK 243

Query: 260 KSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK--LSPRI 317
           +              I+VEG      L Q G +N +S  G ++++ Q+R+L    +  + 
Sbjct: 244 RL----------KEAIVVEGGKTTWYLTQWGFKNCISIEGDSMSDEQIRILKNLGIGIKF 293

Query: 318 VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           V  +D D    +     +  +   L  G      LLS  + P  
Sbjct: 294 VFAYDKD-KDAKFIVNEVSRLTGRLRYGIYDKDNLLSDKDSPTD 336


>gi|321456363|gb|EFX67473.1| hypothetical protein DAPPUDRAFT_261630 [Daphnia pulex]
          Length = 1420

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           L  L N    +++    L      ++ L  L   L +    +     +EI + L      
Sbjct: 223 LENLTNCGKKIEDHEALLLQWNCSDDGLLILMKELLNPNFVEGNNRRDEIEKELR----K 278

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E ++ L++   +  +     E+      +  ++     ++ R L+ Q +  E++IA++  
Sbjct: 279 EFIESLEKATEEIQIERL--ESYEKARLEAIEKKEEAERQKRRLNSQIKASEREIAEMER 336

Query: 608 KGEAEKTAIL----------ISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
           + E E+   +           ++L +      + + ++   + F  + GR
Sbjct: 337 ELEGEQADAMGNVPGTQPSRAAMLVQQKRDNLRRKKEKLAWDRFLSLLGR 386


>gi|312868898|ref|ZP_07729083.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           oris PB013-T2-3]
 gi|311095572|gb|EFQ53831.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           oris PB013-T2-3]
          Length = 827

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 44/145 (30%), Gaps = 11/145 (7%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           I   A L+ ++  +        E   +   L   +    +        ++ +    + +K
Sbjct: 331 IESDAALERRFATVQVDEPTPEESLAILKGLRPRYEAHHHV-------KITDEALEQAVK 383

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
             DR + D  L     +            A     R   L  Q  E++        + + 
Sbjct: 384 LSDRYISDRFLPDKAIDLMDEAAAMVRINAEEKKTRKPSLDEQIAELQSAKEAAIEQQDF 443

Query: 612 EKTAILISILHEVHIQIHQIESQEA 636
           ++     + L E  + +   + Q+A
Sbjct: 444 DRA----ADLREQELSLRAKQEQQA 464


>gi|308162586|gb|EFO64973.1| Kinesin-2 [Giardia lamblia P15]
          Length = 642

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           K    +   ++L  +    L++    ++ D  +           +R+     +A  K   
Sbjct: 463 KESERKAKERQLMAKKIAALIEANKSKMVDKRVLENEERLKDAAIREARNALVAQKKEAE 522

Query: 590 LLSRQKEEIEKQIAQVTA----KGEAEKTAIL-ISILHE-VHIQIHQIESQEA 636
            L ++  E E+Q  Q+        +  +   L ++   E +  +  ++ + EA
Sbjct: 523 RLKKELIEAEQQRKQLEEQCTTALDQAQQLELRLNEYKEQLAERREELHNVEA 575


>gi|326792511|ref|YP_004310332.1| hypothetical protein Clole_3447 [Clostridium lentocellum DSM 5427]
 gi|326543275|gb|ADZ85134.1| hypothetical protein Clole_3447 [Clostridium lentocellum DSM 5427]
          Length = 1474

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 98/282 (34%), Gaps = 19/282 (6%)

Query: 362  FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                  K    + I ++L  V    +  +  +  +  +E    +      + +++D K +
Sbjct: 748  MAYRRQKENELREIDQTLEKVKSFLETYSHEKHASLREESDGFKRQEMELVRNMEDAKDK 807

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               +Q       +  +K + E +    Y +K   +   K    +      +  +  K+  
Sbjct: 808  LMKAQKEAKLTSETLRKEVEEKNRLQGYVEKATEYLGIKEECDKEEVRIKMLQETIKEEE 867

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
               + +   L N    L+E  +  + +   ++E + +   L+ +  ++K     +    L
Sbjct: 868  SAYSKVEYALRNTLEALEEAKENYSLL--RSSESRIVDDPLYKEVKDEKAIYSNKDIVYL 925

Query: 542  CE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             +      E L    +   +        +    +  + ++Q             ++ E E
Sbjct: 926  RDKQEQLKEALDNKQKGHSEIESLLKHNQKVYEENEKSFRQ-------------EQAERE 972

Query: 600  KQIAQVT--AKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            K++  +    +  A++   L   L EV  Q+ +++ Q  +++
Sbjct: 973  KRLESIPVYREAYAQEMDRLSEELIEVRKQLEELDEQVKLMK 1014


>gi|303315129|ref|XP_003067572.1| Chromosome segregation protein sudA , putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240107242|gb|EER25427.1| Chromosome segregation protein sudA , putative [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 1199

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 68/219 (31%), Gaps = 20/219 (9%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            IR  L ++ Q          +  ++  + +    P ++ ++S              +  
Sbjct: 689 EIRRELDKMDQLITRAVGELQKLEQRRQQIQGSNAPLRQEIKSKRDLLHNKADTLEAKRR 748

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            L  +  +   L +Q     +           +    ++  E +        Q L  +  
Sbjct: 749 ALKNIEANVNALTDQVNA-HEEELSTP-----FEKALTNDEEARLENLSSAVQDLRRQHS 802

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL---------ALYKRFRLLSRQKEE 597
               K+ + + R + L     E     + Q     L          L +  R + +Q +E
Sbjct: 803 ELSSKRSEIETRKSILEVELRENLHPRLDQLIGHYLDGGDDTIQGNLKESQRQIKKQNKE 862

Query: 598 IEKQIAQVTAKGEA-----EKTAILISILHEVHIQIHQI 631
           +EK   ++    ++      + + L     E+  ++ ++
Sbjct: 863 LEKLNRRLEQLEDSIEEKNNEASQLEQRKAEIRRELDEL 901


>gi|254283161|ref|ZP_04958129.1| chromosome segregation protein SMC [gamma proteobacterium NOR51-B]
 gi|219679364|gb|EED35713.1| chromosome segregation protein SMC [gamma proteobacterium NOR51-B]
          Length = 1166

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 40/96 (41%), Gaps = 1/96 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +     L++    ++R     +A         R+   +     +    L+  ++E+E+
Sbjct: 144 IEQGMISRLIESKPEELRVFIEEAAGISKYKERRRETENRMRRTLENLERLTDLRDELER 203

Query: 601 QIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQE 635
           Q+A +  + + AE+     +   E+  Q+  ++ +E
Sbjct: 204 QLAHLKRQAQAAERYREYKAEDRELKSQLLALQWRE 239



 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 70/253 (27%), Gaps = 17/253 (6%)

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
             +         +  +    D   R    +    + ++  +  +       R  +     
Sbjct: 743 QFESEQRALGESRALLADALDHMERDALERDELQQQRETHRSTLQSARDRARDARDAVHR 802

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
            D +    +    ++         +  E  +         +   + + +A +   ++   
Sbjct: 803 TDMQAQGLKTQIQTVA-----DAINRLEQQVA-------QLSSRRGELVAQLPEGDDPDA 850

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            L S L +   ++          R         L++ +++              I   R 
Sbjct: 851 ALKSELEALLAQRVTSESALTAARQQVAEHEHALREAEQEKVAVEHRLQGVHGEIESKRL 910

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS-ILHEVHIQIHQIES-Q 634
              +   L  R     RQ  E++   A+V      E +       +  V  +I ++    
Sbjct: 911 AQAE---LRVRIENNERQLRELDAIPAEVAQALPDEASESEWQVKVERVSAKISRLGPIN 967

Query: 635 EAMIEGFGKMSGR 647
            A IE  G+ S R
Sbjct: 968 LAAIEECGRASER 980


>gi|217039376|gb|ACJ76847.1| DNA primase [Streptococcus agalactiae]
 gi|217039382|gb|ACJ76850.1| DNA primase [Streptococcus agalactiae]
 gi|217039384|gb|ACJ76851.1| DNA primase [Streptococcus agalactiae]
          Length = 105

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 2/102 (1%)

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                +   I        +  Y   + + L       + +     R   ++ +       
Sbjct: 6   AYVEKIAKLIAKSPSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHHRSQQQASSSVQ 65

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
           +   +Q  L +       +  E  L   L+NHP +L E    
Sbjct: 66  TSATVQ--LPQTGKLSAITKTEMQLFHRLLNHPYLLNEFRNR 105


>gi|123504085|ref|XP_001328666.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121911612|gb|EAY16443.1| hypothetical protein TVAG_004740 [Trichomonas vaginalis G3]
          Length = 524

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 76/218 (34%), Gaps = 4/218 (1%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              +    Q + + +    ++     +   +   +     +++   + ++  +     L 
Sbjct: 211 ATEQTQQEQKVEETMNTETKQPDNAQNIEKQPENQKEPEIEEEEVEEIIITDNTTVADLM 270

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-FSDFVEQKYFLPEE 536
                R   +L  L N P    +   +L D    N  +QKL   +  S+  +QK    ++
Sbjct: 271 NTFDERYEEILRKLNNIPTHSNKITPKLMD---PNEAIQKLSELIQISERKDQKLKELQK 327

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                 E         + +++ +  +  A  E    D++   +    L K+ + + ++ E
Sbjct: 328 RIDSFQETESNPFFNAISQRLEELAVNEARQENWNSDLQYDKRFESQLEKQSQSIDKEIE 387

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              +QI + + K    +    ++ L  +   I   E +
Sbjct: 388 AKIQQIREQSRKDFEIQNKSAVNELESLKKTITAKEEE 425


>gi|15242952|ref|NP_200041.1| protein transport protein-related [Arabidopsis thaliana]
 gi|10177394|dbj|BAB10525.1| hyaluronan mediated motility receptor-like protein [Arabidopsis
           thaliana]
 gi|47550677|gb|AAT35237.1| At5g52280 [Arabidopsis thaliana]
 gi|51970830|dbj|BAD44107.1| hyaluronan mediated motility receptor-like protein [Arabidopsis
           thaliana]
 gi|332008812|gb|AED96195.1| Myosin heavy chain-related protein [Arabidopsis thaliana]
          Length = 853

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/280 (9%), Positives = 81/280 (28%), Gaps = 26/280 (9%)

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              +  ++  S    +    +E   K  + + +D+       + I +    + ++   E 
Sbjct: 299 KRIQELSKEVSCLKGERDGAMEECEKLRLQNSRDEADAESRLRCISEDSSNMIEEIRDEL 358

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY- 502
           S              +   S   +  ++       +    E + L +L+     L+E   
Sbjct: 359 SCEKDLTSNLKLQLQRTQESNSNLILAVRDLNEMLEQKNNEISSLNSLLEEAKKLEEHKG 418

Query: 503 ------------QELADIRYDNNELQK-------LWSFLFSDFVEQKYFLPEEIHQRLCE 543
                       Q++ D+ ++ +  +K       L   L  ++   K    + +  +L +
Sbjct: 419 MDSGNNEIDTLKQQIEDLDWELDSYKKKNEEQEILLDELTQEYESLKEENYKNVSSKLEQ 478

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +       +            +  E     ++Q   +          L  Q +E++K++ 
Sbjct: 479 QECSNAEDEYLDSKDIIDELKSQIEILEGKLKQQSLEYSECLITVNELESQVKELKKELE 538

Query: 604 QVTAKGEAE----KTAILISILHEVHIQ--IHQIESQEAM 637
                 + +               +  +  + +     A+
Sbjct: 539 DQAQAYDEDIDTMMREKTEQEQRAIKAEENLRKTRWNNAI 578


>gi|508538|gb|AAA62617.1| alpha-internexin [Mus musculus]
          Length = 504

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/316 (9%), Positives = 83/316 (26%), Gaps = 34/316 (10%)

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           G     +  S G D         +    +   +               +      +   L
Sbjct: 63  GLAYRRLPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRAL 122

Query: 405 EIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           E  L        +   +   + + +R+   QL +              ++    + +   
Sbjct: 123 EAELAALRQRHAEPSRVGELFQRELRELRAQLEEASSARAEALLE---RDGLAEEVQRLR 179

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD----NNELQKLW 519
            R  + S  +    +    ++  +    +    + ++    L ++ +     + E+ +L 
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTE--------A 569
           + L +                L           + L  +   +      ++        A
Sbjct: 240 ATLQASSQAAAEVDVAVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299

Query: 570 NIVDVRQGYQQALALYKRF---------------RLLSRQKEEIEKQIAQVTAKGEAEKT 614
              +  +  ++ +  Y+R                  L RQ  E+E++       G  +  
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEER-DSAEVAGYQDSI 358

Query: 615 AILISILHEVHIQIHQ 630
             L S L     ++ +
Sbjct: 359 GQLESDLRNTKSEMAR 374


>gi|297665643|ref|XP_002811150.1| PREDICTED: syncoilin-like isoform 1 [Pongo abelii]
          Length = 487

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QA 581
            +   +      E++ Q+L           L    R +  +      +  D+ + Y+ Q 
Sbjct: 294 LAQLRDAYQKQKEQLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQL 353

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           L L +R    ++  ++ + +I ++      E    L +   ++ +Q   +E Q A++
Sbjct: 354 LRLLERKEAGTKALQKTQAEIQEM-----KEALRPLQAEARQLRLQNRNLEDQIALV 405


>gi|281206302|gb|EFA80491.1| pleckstrin domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 1331

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 89/284 (31%), Gaps = 27/284 (9%)

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
           + K   +     +   +   +        ++ + E   K      K+++      +    
Sbjct: 605 WRKYYEQQKQYEEQWRQYYEQQNQEMERIKQQQKEEQDKMQAQLQKEREEVERLKREAAQ 664

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG------------KLSK 478
           + Q+  Q+            K+      ++    R     + +                +
Sbjct: 665 KYQEGEQEKQKIMIWQQEEMKRQMNELQRERELARKHDEEVRRAIIEEQKQQQQKLNEQQ 724

Query: 479 KPSLREAALLLTLINHPAILQEQYQE--LADIRYDNNELQKLWSFLFSDFVE-QKYFLPE 535
               ++   +   +      + Q +     +I+    +LQK    + S   +       E
Sbjct: 725 NILRQQQEAITRKLQEEERARHQAEAQKAEEIKRQEAQLQKKKEDIDSLVKKFDSEKNHE 784

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                  +    +  ++L ++  +     A     IV++++  +Q     K     +RQ 
Sbjct: 785 RSLAESRKFDLAKQQEELAKRNEEI----AKEREAIVELKKKQEQERNALKIEFEKNRQL 840

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           EE  +++ +     + E        L ++  +  +I+SQ+A I+
Sbjct: 841 EE--QKLREQQDAIKRE------QELLDIQKKDIKIQSQQATID 876


>gi|312200236|ref|YP_004020297.1| ATP-dependent chaperone ClpB [Frankia sp. EuI1c]
 gi|311231572|gb|ADP84427.1| ATP-dependent chaperone ClpB [Frankia sp. EuI1c]
          Length = 878

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 68/214 (31%), Gaps = 16/214 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++K +   +   R ++           +  +++    + ++     +++ AL+    ++H
Sbjct: 324 YRKRVESDAALERRFQPVMVDEPSVEDTISILRGLRERFEVFHGVKIQDRALVAASTLSH 383

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +    +L + + S   E            + E    +      
Sbjct: 384 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDETSRRVTRLEIEEAALAKETDPAS 442

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG----- 609
           +   D             D  +   +A       R   R+ +E+  +I +V         
Sbjct: 443 QARLDQLRRELADVRAEADAMRAQWEA------ERQAIRRVQELRGEIERVRRAAEEAER 496

Query: 610 --EAEKTAIL-ISILHEVHIQIHQIESQEAMIEG 640
             E E+ A L    L E+  ++   E Q A  +G
Sbjct: 497 AYELERAAELRYGRLGELERRLATEEEQLAAKQG 530


>gi|239608749|gb|EEQ85736.1| spindle-pole body protein [Ajellomyces dermatitidis ER-3]
          Length = 1236

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 74/242 (30%), Gaps = 17/242 (7%)

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
                   +   H +D   R      I +RL           +       ++    ++  
Sbjct: 491 KARMQDDIDLAQHERDIARRE--RDDISERLHHADDDIRNGENAKDVLKTRHDALTNESA 548

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
             QR +  +  +    ++    E      + +   +  +   +L  +   ++E++ L   
Sbjct: 549 SLQRDLAQAKTRISNLEEQIEAERD--QYMNDTDKLRLQHRNQLDQL---HDEIESLKHD 603

Query: 522 LFS----DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           +         ++  +   +    L +    +      R +        T  +    ++  
Sbjct: 604 IEDREGQHATDRDRWDSLKRSLELQKEKVEQQAAGYKRTIDKLQNVETTLSSREDKLQNI 663

Query: 578 YQQALALYKR-FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +     + +   LL+RQ +E+   IA      E+++       L  V  ++     +E+
Sbjct: 664 IESEKQRHLQDEELLNRQIKELNDDIASKRQAAESQR-----QELLSVKEELRAARREES 718

Query: 637 MI 638
            +
Sbjct: 719 SL 720



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 92/322 (28%), Gaps = 15/322 (4%)

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFE 372
              R +   + DD   R  +   D+                   E               
Sbjct: 502 QHERDIARRERDDISERLHHADDDIRNGENAKDVLKTRHDALTNESASLQRDLAQAKTRI 561

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
             + E +      +  +T+       ++  +L   +++  + I+D++ ++   +   D L
Sbjct: 562 SNLEEQIEAERDQYMNDTDKLRLQHRNQLDQLHDEIESLKHDIEDREGQHATDRDRWDSL 621

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           ++  +    +       +K+          +    +  L     S+K            +
Sbjct: 622 KRSLELQKEKVEQQAAGYKRTIDKLQNVETTLSSREDKLQNIIESEKQRH---------L 672

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
               +L  Q +EL      N+++        S   E      E    R  E    E L+ 
Sbjct: 673 QDEELLNRQIKEL------NDDIASKRQAAESQRQELLSVKEELRAARREESSLREKLQA 726

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           L+  +           A   + ++     L    +     RQ        A +       
Sbjct: 727 LEDDIVVLQATLEEERAFAGNQQKSGASDLEKQLQAANKERQVARDNLANANIEIHNLRM 786

Query: 613 KTAILISILHEVHIQIHQIESQ 634
            +A L +   E+  QI +I+ Q
Sbjct: 787 ASAELEAERDELQSQIRRIQGQ 808


>gi|149579024|ref|XP_001516214.1| PREDICTED: similar to myosin, heavy polypeptide 4, skeletal muscle,
            partial [Ornithorhynchus anatinus]
          Length = 1715

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 80/277 (28%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  ++   +    +       +      ELE   K     ++D +      
Sbjct: 1201 EEEQEAKAELQRAMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1260

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              +    +  + RLQ   +  + +           + + R+         Q S       
Sbjct: 1261 NAKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQRNFDKVLAEWKQKSEETQAEL 1320

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            +       +L   L       +E    L  ++ +N  LQ+  S L     E         
Sbjct: 1321 EASQKEARSLSTELFKMKNAYEESLDHLETLKRENKNLQQEISDLTEQIAEGGKH----- 1375

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +         +A + +     +       R   +  +  +
Sbjct: 1376 ------------IHELEKVKKQIEQEKCELQAALEEAEASLEHEEGKILR---IQLELNQ 1420

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1421 VKSEIDRKIAEKDEEIDQLKRNHLRVVESMQSTLDAE 1457


>gi|157818431|ref|NP_001100446.1| periplakin [Rattus norvegicus]
 gi|149042627|gb|EDL96264.1| periplakin (predicted) [Rattus norvegicus]
          Length = 1754

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 74/213 (34%), Gaps = 16/213 (7%)

Query: 438  KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
            +   +     +  ++  +    +GP + L++  ++K             L  TL      
Sbjct: 902  ERRQQLENEVKSAQEEIQTLKDQGPQESLVRKEVLKKVPDPALEESFQQLQQTLAEEQHK 961

Query: 498  LQEQYQELADIRYDNNELQK----------LWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
             Q   +EL  ++     L++          +   L  +    +     ++ + L      
Sbjct: 962  NQLLQEELGALQLRLQALEQETRDGGQEYVVKEVLRIEPDRAQEDEVLQLREELEGLRRQ 1021

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            +  ++ +  +    + +   E + V  +   ++ + L +    L  +   ++++  +   
Sbjct: 1022 KGAREAEVLLLQQRVAALAAEKSRVQEKVTEREVVKL-QNDPQLEAEYRRLQEEHQREGT 1080

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
              E ++  +       +  ++ ++E + AM EG
Sbjct: 1081 LREKQEEELSF-----LQAKLRRLEKERAMAEG 1108


>gi|42519985|ref|NP_965900.1| ankyrin repeat-containing protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42409722|gb|AAS13834.1| ankyrin repeat domain protein [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 800

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANI 571
           + +KL   L     ++     E++  RL        E++       +         +A  
Sbjct: 415 DNKKLAKLLIKHGADRSLIKDEDLIDRLNSMCDQPSEVVPSTFSHSKTHNATETPEKAEK 474

Query: 572 VDVRQGYQQALA-----LYKRFRLLSRQKEEIE-------KQIAQVTAKGEAEKTAILIS 619
           V+ R+   + L        K+  LL ++ +++E        ++ +   K +         
Sbjct: 475 VEKRKAKLKELRTQLKDEQKKNELLKQKIQDLESKNTTLNSELEKTKTKTDEVPLEKAQK 534

Query: 620 ILHEVHIQI----HQIESQEAMIE 639
            L E+   I     ++++ E + E
Sbjct: 535 ELTELKSYITGHGARLDTLEKLNE 558



 Score = 37.6 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 22/206 (10%), Positives = 67/206 (32%), Gaps = 12/206 (5%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           ++ +   ++  T+     +  +   +           + S L K K        E A   
Sbjct: 476 EKRKAKLKELRTQLKDEQKKNELLKQKIQDLESKNTTLNSELEKTKTKTDEVPLEKA-QK 534

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            L    + +      L  +   N E + L   + +   E      E   ++   +     
Sbjct: 535 ELTELKSYITGHGARLDTLEKLNEENESLRQEIKNLKNENTTLKGE--LEKTKTKKNEVP 592

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA-- 607
           L++  +++ +        E  +  + +       L +    L ++ +++E +   + +  
Sbjct: 593 LEKAQKELTELRNCVTEHETKLEVLEK-------LNEENESLEQKIQDLESKNTTLNSEL 645

Query: 608 KGEAEKTAILISILHEVHIQIHQIES 633
           +    K +    +L +   ++ + +S
Sbjct: 646 EENENKHSKTKVLLEKAQKELAESKS 671


>gi|159114371|ref|XP_001707410.1| Coiled-coil protein [Giardia lamblia ATCC 50803]
 gi|157435515|gb|EDO79736.1| Coiled-coil protein [Giardia lamblia ATCC 50803]
          Length = 1652

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 92/281 (32%), Gaps = 18/281 (6%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++         L   +     ++  +E         ++  +L+ +L        D     
Sbjct: 693 LKEAHGNTLRLLDENNALRTQIMDIKEGNIDPEALQEDNYKLQENLAALQLDFPD----- 747

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                I+D+L  L Q      S   R   + ++       ++    +  +   L++   L
Sbjct: 748 -IESIIQDKLCLLQQINEFHASIDDRGRLEESKQVLLDKIAELKTLNPDIDSLLAENERL 806

Query: 483 REA-ALLLTLIN-HPAILQEQYQ---ELADIRYDNNELQKLWSFLFSDFVE-----QKYF 532
           +E    L   I   P + Q+  +    L D++  + ++ +L   +     E         
Sbjct: 807 KEKMQTLEIAIQSRPRLEQQNRELINALEDLKRGSPDVLQLLQSVEGMQQEVSQYKNYIN 866

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
            P+++ Q+  +      + +L           A  ++    +    Q A     +   L 
Sbjct: 867 SPDQLAQK--KVEIEHEIAELHSAHSHVFERLAEIDSLQQKLEASTQLAKDNSVKSECLV 924

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            Q  +++ Q+  +    +      L++   ++  +I +++ 
Sbjct: 925 EQIAQLKAQLKALDDTAKKSPVGALLAEKAQLEREIVELQR 965


>gi|328863809|gb|EGG12908.1| hypothetical protein MELLADRAFT_58819 [Melampsora larici-populina
            98AG31]
          Length = 1803

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 91/285 (31%), Gaps = 35/285 (12%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
                        +R E    L+  +  I+D K      + +  +L +  +  I +     
Sbjct: 1164 MHKRMEMVIEESQRKEKGKDLEIILRSIRDLKNGEEEIEMMMKKLSEAVKPQIYQLIDLT 1223

Query: 448  RYWKKNARHRDQK-GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL---QEQYQ 503
                + A    Q+  PS   +   L+     +   ++E  +      H   L   +E  +
Sbjct: 1224 SDKSETAGLIVQELKPSLEDLMKRLIGELRVENEKIKEKRIDED--EHRESLKVGEEMIE 1281

Query: 504  ELADIRYD----------------NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
             +  +                   N   + + S +  + +E K    +E+     E   G
Sbjct: 1282 LITQLDLKSLNFYQDISQQIGSTMNEISELIKSEIRREVLESKENEIQELRNVKNELELG 1341

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             LLK      R     +   E  + +  +  ++   L K+ R+   + E   K+  ++  
Sbjct: 1342 -LLKARADHGRVRSERAVEKEKIMEEKSKVERELEELRKKKRMDELEIERFRKEKEEMEG 1400

Query: 608  KG-----EAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
                   E E        L E+  ++      E+  EGF ++ GR
Sbjct: 1401 SRRVQGVEKESVERERDRLKELVARL------ESRCEGF-EVKGR 1438


>gi|302837442|ref|XP_002950280.1| hypothetical protein VOLCADRAFT_104666 [Volvox carteri f.
           nagariensis]
 gi|300264285|gb|EFJ48481.1| hypothetical protein VOLCADRAFT_104666 [Volvox carteri f.
           nagariensis]
          Length = 628

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 55/169 (32%), Gaps = 21/169 (12%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKY------FLPEEIHQRLCER--GFGELL 550
            +  +E+  +    N+LQ   +F+   F + K          +    RL      + ++L
Sbjct: 19  AKYQEEIRQLEQAKNDLQLEHTFVLDKFRQLKAENDRLRAEIDLFKSRLTNAADDYADIL 78

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ----KEEIEKQIAQVT 606
           +    Q+R         + ++  +     + L   +  +  + Q     +E  + +    
Sbjct: 79  EHRQEQIRAEENKLKGLQNHVEKLEADIARYLEEIRVLKDANAQQAIKLDEAAQMLQDKE 138

Query: 607 AKGEA-----EKTAILISILHEVHIQIHQIESQ----EAMIEGFGKMSG 646
              EA     +        L  +  Q+ + + Q     A IE     SG
Sbjct: 139 NLEEAVRRQHDLIEKQTEELRSLKKQLEERDGQLERANAQIEELTLKSG 187


>gi|302808961|ref|XP_002986174.1| hypothetical protein SELMODRAFT_40499 [Selaginella moellendorffii]
 gi|300146033|gb|EFJ12705.1| hypothetical protein SELMODRAFT_40499 [Selaginella moellendorffii]
          Length = 700

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 90/286 (31%), Gaps = 38/286 (13%)

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
             DP        +   E L  E L         E +          +      +      
Sbjct: 367 NRDPVVAEMQRMRQQLEVLQAELLCAQAATIPEEIQILKQKVTWLESNNLELRRELQQSA 426

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +   ++ Y       R+Q+L  + ++  S              ++           V   
Sbjct: 427 ESYLVKNYL-----KRIQELELELLSVKSSNATDLSPEGEGDVEEEGEGEGDVDVDVVAA 481

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELA-DIRYDNNELQKLW---SFLFSDFVEQKY 531
              + ++R+             L ++ +EL   +     E++      + +     E+K 
Sbjct: 482 KELEHTMRQ-----------DCLDKELEELDKRLELKEAEMKAFARPDNVVLKQHFEKKL 530

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
              E+  + L  +    LLK+L+            ++ +   +++ Y Q      + + L
Sbjct: 531 IELEDEKKTLQ-KERDALLKELEALATS-------SDEHAHKMQETYVQ------KLKDL 576

Query: 592 SRQKEEI-EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            RQ  E+ +KQ  Q     + +++      L E    I +++ Q+A
Sbjct: 577 ERQIAELKKKQENQAQLLRQKQRSDEAAKRLQE---DILRMKQQKA 619


>gi|292622124|ref|XP_691467.4| PREDICTED: myosin-10-like [Danio rerio]
          Length = 2015

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 77/236 (32%), Gaps = 30/236 (12%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL-R 483
             + +R+ ++ +      E        K+  +        + +      +   ++  S  +
Sbjct: 1446 KERLREEIEDMTIALQRERQNCTALEKRQKKFDQCLAEEKAVSARLQEERDRAEAESREK 1505

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD----FVEQKYFLPEEIHQ 539
            E   L         LQE  ++  ++   N +L+     L +                   
Sbjct: 1506 ETRFLSL----SRALQEATEQRDELERTNKQLRLEMEQLVNAQDDVGKNVHELERSRRAL 1561

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-----RFRLLSRQ 594
                +   E  ++L+ ++ +A       E  +  +R  +++ ++  +     + R L++Q
Sbjct: 1562 ETEAQSLKEQTQELEDELGEAENARLRLEVTLQALRAQFEREISTKEEKGEEKRRALNKQ 1621

Query: 595  KEEIEKQIAQVTAKGEAEKT--AILISILHEVH--------------IQIHQIESQ 634
              E+E  + +   +     T    L + L E                 Q+ ++++Q
Sbjct: 1622 VRELETMLEEEKTQRAQALTVKKQLETELQEAEAQVEAANRGREEAFRQMKRLQTQ 1677



 Score = 37.6 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 81/248 (32%), Gaps = 14/248 (5%)

Query: 397  TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
               E         + ++ +K++       +   ++ ++   + +            +   
Sbjct: 1129 RRTEAQRALREAMSQVSELKEEVENERGMRERAEKQRRDLGEELEALRTELEDTL-DTTA 1187

Query: 457  RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
              Q+  S+R  +   ++  L ++    EA L    I H A +    ++L + +     L+
Sbjct: 1188 AQQELRSRREAELGELQRCLEEETRRHEAQLSELRIKHTAAIDSLQEQLDNAKRSRQSLE 1247

Query: 517  KLWSFL----FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            K  + L     +   E K     ++      +     L++L+ ++  A       E  + 
Sbjct: 1248 KAKAVLEEERLNLSAELKTLQGGKMESERGRKRAEGQLQELNARLSQAEREREEREERLG 1307

Query: 573  DVR----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             ++           +   +   L ++   +E Q+  V      E           +  ++
Sbjct: 1308 KLQSELESLSSSLSSSDSKSHRLHKEVSSLESQLHDV-----QELLQEETRQKLALGSRV 1362

Query: 629  HQIESQEA 636
              +E ++A
Sbjct: 1363 RALEEEKA 1370


>gi|149239532|ref|XP_001525642.1| hypothetical protein LELG_03570 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|229488235|sp|A5E1T3|EIF3A_LODEL RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 110 kDa subunit homolog; Short=eIF3
           p110; AltName: Full=Translation initiation factor eIF3,
           p110 subunit homolog
 gi|146451135|gb|EDK45391.1| hypothetical protein LELG_03570 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 883

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/300 (12%), Positives = 97/300 (32%), Gaps = 19/300 (6%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P   +R         L      +     +R+ E +          L    +   +  K  
Sbjct: 520 PAELVRSQISKLAATLASSVQIIDPSYERRQQEAKQAALQRAVEGLIREQQRLADRTKIL 579

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA----RHRDQKGPSQRLMQSSLVKG 474
           + R   ++  +   ++L  K   E     +  ++      + R ++   QR  ++ L   
Sbjct: 580 EERKLAAEKRKREEEELQAKLKQERIAAEQKAEQERLIQEQERKKEEKLQREKEAILENE 639

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K      +    ++   +N+   L +   +L  I   N + ++L   L     +  Y   
Sbjct: 640 KRKLAEEINAKGIIKVDMNNLKDLDKSKLQLMQIEQLNKDRKELEEKLKGTAKKADYLER 699

Query: 535 E---EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV---RQGYQQALALYKRF 588
                  + L      +   + ++      L  A  + +  +    R   Q+ +  Y +F
Sbjct: 700 AFRKYELKLLEAEAQKQQGLEREQYENVKQLKVAKAKKDFDEAIQVRDRLQRIIPDYTKF 759

Query: 589 RL---------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +          +++ KEE +++  +   +   +     I  L     +  + +++EA  +
Sbjct: 760 KSEIDAKNAVKVAKLKEEAQERFEKAKQERIEKVKRQRIEELKSRKERERKAQAEEAARK 819


>gi|32449796|gb|AAH54342.1| EIF3A protein [Homo sapiens]
          Length = 812

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQT 574

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|24581858|ref|NP_723058.1| quick-to-court, isoform D [Drosophila melanogaster]
 gi|22945638|gb|AAN10528.1| quick-to-court, isoform D [Drosophila melanogaster]
          Length = 598

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 48/151 (31%), Gaps = 21/151 (13%)

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
            L +      EL  ++     + +  +     ++ +   ++    LL++L          
Sbjct: 354 NLENYELQRQELISMYEHRIEELIRSQDSATSDLKRSHNDK-VEALLQKLAECNTRYSDM 412

Query: 564 SATTEANIVDVRQGYQQALALYKRF-----------RLLSRQKEEIEKQIAQVTAKGEAE 612
               E     +R+  +Q   L ++              + +Q +E E +I++     +  
Sbjct: 413 VPDYEQAKQRIRELEKQLEDLQRKLIEHEEKQNKMYLHMYQQGQEAE-RISRADQALDLA 471

Query: 613 KTA--------ILISILHEVHIQIHQIESQE 635
           +           L+  L     ++  I + E
Sbjct: 472 QRQPESKVSINELLHQLQSTQDELENIRASE 502


>gi|332025287|gb|EGI65458.1| Nucleoprotein TPR [Acromyrmex echinatior]
          Length = 2277

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 83/284 (29%), Gaps = 30/284 (10%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
              +R+         +ER   E          + +         + ++L+Q+    I +  
Sbjct: 872  HLERQLTTAQERLKEERELCERVRMELDQARETETQSSQKIDQLNNKLRQVAAHSIAKPL 931

Query: 445  GYGRYWKKN---------ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
                   K              +    S +L  +     +        E  L      + 
Sbjct: 932  TGDEGLVKRVKELEIQLSTSQVEINSLSDQLKAARQQSQQYCDIAESAETQLRELTTEYN 991

Query: 496  AILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIHQRLCE-----RGFG 547
               +E    L + R +   LQK    L    +     +     E+  RL E         
Sbjct: 992  KCKEELENALKESRVEIISLQKRVKELGDDLAKISNGRQETDSELRDRLAEAERKIEELD 1051

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA---- 603
            EL  +L+    D    S   +       +   Q  +  +    L  + + +++++     
Sbjct: 1052 ELKGELELLKTDLKSASIAVKEAEDKYTREMLQHSSDLQILTKLKEEAQHVQQRLDVLTL 1111

Query: 604  ---------QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
                     +V      E+   L++ + E   +I  +++Q A++
Sbjct: 1112 ERNAAVQALEVEKSASKEREQKLVNEVEETQKRIMDLDTQNALL 1155


>gi|326925471|ref|XP_003208938.1| PREDICTED: protein Hook homolog 1-like [Meleagris gallopavo]
          Length = 930

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 99/302 (32%), Gaps = 26/302 (8%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D             + ++  + 
Sbjct: 477 DDYRVHCEDLEKQLIELQHRNNELTSLAEESRALKDENDILRATADKASKLESTVEVYRK 536

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +       R +++ L +  +           +  +    +   +   +          + 
Sbjct: 537 KLQDLNDFRRQVKSLQETNMMYMHNTVSLEDELRKANAARAQLETYKRQVQELHNKLSEE 596

Query: 481 SLREAALLLTLIN----HPAILQEQYQEL---ADIRYDNNELQ--KLWSFLFSDFVEQKY 531
           S R   L   +      H A+++E+ + +     ++  N EL+  ++     S     + 
Sbjct: 597 SKRADKLAFEMKRLEEKHEALVKEKERLIVQCDALKETNEELRYSQMQQDHLSRTDASRI 656

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD------------VRQGYQ 579
              + +   L    + E+  QL  + +   L    +E   +             V +   
Sbjct: 657 KSHDNLAAELLPVEYREMFIQLQHENKMLLLQQEGSENERITELQKQLEQKQWTVNELET 716

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGE-----AEKTAILISILHEVHIQIHQIESQ 634
           +     +R   L +Q E++++ + +  +K E      +K A  +  L EVH ++ + E+ 
Sbjct: 717 EKRLNKERIGELQQQIEDLQRTLQEQGSKTEGSSNLKQKLAAHMEKLSEVHDELQKKEAA 776

Query: 635 EA 636
            A
Sbjct: 777 LA 778


>gi|310126570|ref|XP_003120435.1| PREDICTED: hypothetical protein LOC100510050 [Homo sapiens]
          Length = 899

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 58/177 (32%), Gaps = 10/177 (5%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
            + +      +     +  +LRE +L         + +E  +  A +      L  L   
Sbjct: 290 KALQAQFEDAITAHQRETTALRE-SLRDLAAERGDVEREAERLRAQLTVAQEGLAALRQE 348

Query: 522 L--FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN--IVDVRQG 577
           L    +  E  +   +E  + L +    + +  L      A +  A  E         + 
Sbjct: 349 LQGVEESREGLHREAQEARRALSDEAREKDVLLLFNSELRATICRAEQEKASFKRSKEEK 408

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            Q+ L L +    L ++   +   + ++       +       L E+H Q+  ++++
Sbjct: 409 EQKLLILEEAQAALQQEASALRAHLWELEQARGDAR-----QELRELHRQVRTLKAE 460


>gi|297471303|ref|XP_002685126.1| PREDICTED: DAZ interacting protein 1-like [Bos taurus]
 gi|296491038|gb|DAA33136.1| DAZ interacting protein 1-like [Bos taurus]
          Length = 581

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 69/201 (34%), Gaps = 8/201 (3%)

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT--LINHPAILQEQ 501
               +         + +   +        + +  ++  L+EA ++            + +
Sbjct: 11  KQRKQEQPVEEVLEELRAKLKWTQGELEAQREAERQRQLQEAEIIRQREAETKKEFDEWK 70

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
            +E A +  + ++L+KL+   F     Q   L E++            L  L  +  +  
Sbjct: 71  EKERAKLYGEIDKLKKLFWDEFKSVANQNSTLEEKLQALQSHSVMKSNLGSLRDEEPEER 130

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSR----QKEEIEKQIAQVTAKGEAEKTAIL 617
           L  A     + +  +   Q     ++ + L      QK E+++Q  ++ A    ++    
Sbjct: 131 LRQAQELWALKE--KMEIQKTEWRRKMKALQEEHAAQKRELQEQNERLQATLSQDQRKAA 188

Query: 618 ISILHEVHIQIHQIESQEAMI 638
                ++H    Q++ Q  +I
Sbjct: 189 AQAQRQIHALRTQLQEQARLI 209



 Score = 37.6 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 69/210 (32%), Gaps = 26/210 (12%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + +R +L+    +   +     +   + A         + + Q      K   +  
Sbjct: 20  EEVLEELRAKLKWTQGELEAQREAERQRQLQEA---------EIIRQREAETKKEFDEWK 70

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            +E A L   I    + +  + E   +   N+ L++    L S  V +           L
Sbjct: 71  EKERAKLYGEI--DKLKKLFWDEFKSVANQNSTLEEKLQALQSHSVMKSNL------GSL 122

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-SRQKEEIEK 600
            +    E L+Q         LW+   +  I      +++ +   +       R+ +E  +
Sbjct: 123 RDEEPEERLRQ------AQELWALKEKMEIQKTE--WRRKMKALQEEHAAQKRELQEQNE 174

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           ++    ++ + +  A     +H +  Q+ +
Sbjct: 175 RLQATLSQDQRKAAAQAQRQIHALRTQLQE 204


>gi|294636171|ref|ZP_06714591.1| gifsy-1 prophage VmtH [Edwardsiella tarda ATCC 23685]
 gi|291090537|gb|EFE23098.1| gifsy-1 prophage VmtH [Edwardsiella tarda ATCC 23685]
          Length = 953

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/296 (11%), Positives = 99/296 (33%), Gaps = 43/296 (14%)

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL------- 420
           + A+  +   +    D +     +    +  ++        +  ++++K   +       
Sbjct: 381 ENAWRAVKETASGAWDTMLSIGRDVLIRDRVEQTRRQLEEAEKNLSNLKQGTIPGFGINT 440

Query: 421 -----RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                +      +R +L +L ++   E         K+AR + ++   +R  +      +
Sbjct: 441 GAIEKQQQLVSQLRKQLGELSEQSYQEAI-------KSAREKAERNEQERQKRQFNADQQ 493

Query: 476 LSKKPSLREAALLLTL--INHPAILQEQYQELADIRYDNNELQKLWSF----------LF 523
           L ++    E   L +L  I +    +E  +    I+ +N   +K  S           L 
Sbjct: 494 LKRQYETAEEQHLRSLARIKNSYASKEVKEL--AIKRENERYEKSLSHGGTTRLQGDSLA 551

Query: 524 SDFVEQKYFLPEEIH------QRL--CERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
             + ++     E +       QRL   E+    L ++L+     +   +  +      V 
Sbjct: 552 DSYSQRLAKTREALRLERAGAQRLTQSEQDLIALRQRLNDLKGRSLTKTEQSVVANAAVL 611

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +         ++     +   E++++ AQ++ +   E          E+ ++  ++
Sbjct: 612 EKLLSQNIAEEKALEHQKALNELKRKGAQLSMQLGQEAERE--QQARELELRSMRM 665


>gi|237836113|ref|XP_002367354.1| intraflagellar transport protein component IFT74/72, putative
           [Toxoplasma gondii ME49]
 gi|211965018|gb|EEB00214.1| intraflagellar transport protein component IFT74/72, putative
           [Toxoplasma gondii ME49]
 gi|221505962|gb|EEE31597.1| intraflagellar transport protein component IFT74/72, putative
           [Toxoplasma gondii VEG]
          Length = 606

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 66/226 (29%), Gaps = 14/226 (6%)

Query: 411 CINHIKDQKLRYYY-SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
               + ++  +     + + ++  +L         G GR  +   +   +   S+    +
Sbjct: 314 LSRRLPEEDEQEQQKLRLLAEKDAELSAFIERYSKGEGREKRSATQAAGEAELSEAEKLN 373

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           SL++ +L   P   +A  L   +N      ++ +            Q L         +Q
Sbjct: 374 SLLEEQLRAVPMPEQAETLARALNETKTALQKAE------------QDLLEAKSQLEEKQ 421

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           K    EE  + + +     + K L+    +        +       +   Q     K  R
Sbjct: 422 KELYREENMEAISKEELRVVCKHLEDMRGEIAEKLDKADDLRRLTEEEQNQLTHAEKHLR 481

Query: 590 -LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             L   +   E    +        +   +   L ++  ++ +    
Sbjct: 482 GNLEEVRAATEAATNKKNEAMNRLRENSVHQRLADLEAELERTRRS 527


>gi|55741486|ref|NP_999020.1| myosin-7 [Sus scrofa]
 gi|1698895|gb|AAB37320.1| beta-myosin heavy chain [Sus scrofa]
          Length = 1935

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 100/269 (37%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1566 NQIKAEMERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1626 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1685

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      E    +L  +++  V
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMEADLSQLQTEVEEAV 1745

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            +++       +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1746 QESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1806 KGGKKQLQKLEARVRELENELEAEQKRNA 1834


>gi|4456475|emb|CAB36967.1| rfg5 protein [Homo sapiens]
          Length = 585

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 78/269 (28%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK----LRYYYSQAIRDRLQ 433
           +      + K   +            LE         ++DQ     L+    Q +++RL 
Sbjct: 296 AKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTLQERLH 355

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 356 EADATLKREQESYKQMQSEFA---------ARLNKVEMERQNLAEAITLAER-------K 399

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    +   +    ++     L+     L     +        E++   L E    E L 
Sbjct: 400 YSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLD 459

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 460 SSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHD 519

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   IE
Sbjct: 520 QIAGQKASK--QELETELERLKQEFHYIE 546


>gi|329961359|ref|ZP_08299482.1| hypothetical protein HMPREF9446_01047 [Bacteroides fluxus YIT
           12057]
 gi|328531836|gb|EGF58659.1| hypothetical protein HMPREF9446_01047 [Bacteroides fluxus YIT
           12057]
          Length = 337

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 15/127 (11%)

Query: 2   NYPRDFIKDLLI--HIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57
           NY  +++ D+     I I++ +    Y    ++  N      W   P  +E   SF  N 
Sbjct: 13  NYSNNYLMDIQTAKQIRIADYLHSLGYSPVKQQGINL-----WYKSPLREETEASFKVNI 67

Query: 58  SKGFYYCFSCHVKGDHLSFLSA---LLGCSFIESVQRLAAIA-GVPLPVVDPKIEKKEKI 113
            +  +Y F+    G  +   S         +I  ++R+A     +         +   + 
Sbjct: 68  ERNQWYDFALGKGGGTIELASHLYATDHIPYI--LERIAEQTPHIRPDSFSFGKQSSSEP 125

Query: 114 QTDLIRL 120
           +   + +
Sbjct: 126 RFQQLEI 132


>gi|327315395|ref|NP_996769.3| coiled-coil domain-containing protein 18 [Homo sapiens]
          Length = 1299

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/253 (9%), Positives = 85/253 (33%), Gaps = 4/253 (1%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            R+ +       +E +++E  + +     +++ +       I D+ +   +K         
Sbjct: 868  RQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELE 927

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            +          +    + ++++ L       K +LR+   L  ++    +  E  ++   
Sbjct: 928  KLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTT 985

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            I+    EL++    +     E          +    +     +  LD  +R+        
Sbjct: 986  IKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1045

Query: 568  EANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
               +   + +   +     K+   L+ + +  ++Q+ +        +   +  +  E+  
Sbjct: 1046 IIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNE-QEISQLKKEIER 1104

Query: 627  QIHQIESQEAMIE 639
               +++  E++++
Sbjct: 1105 TQQRMKEMESVMK 1117


>gi|320100561|ref|YP_004176153.1| SMC domain-containing protein [Desulfurococcus mucosus DSM 2162]
 gi|319752913|gb|ADV64671.1| SMC domain protein [Desulfurococcus mucosus DSM 2162]
          Length = 826

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 44/143 (30%), Gaps = 23/143 (16%)

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             +    V++     E +  RL ER    LL++  R   +   +       +  + +   
Sbjct: 203 ENIIRSRVDELARNMERLKTRLRERSKESLLEEKKRLTAEVEGYEKARTEKLRRLEEVEA 262

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTA----------------------KGEAEKTA-I 616
                 +      R+  E++ +I Q                         + +       
Sbjct: 263 SIEREQRLLMEAEREVAELKSRIEQARRLEARLREIEGEIAGVAAGIGGVEADPASILGE 322

Query: 617 LISILHEVHIQIHQIESQEAMIE 639
           L   + E   ++ ++  +EA+IE
Sbjct: 323 LTRRIDEASGRLRELHEKEALIE 345


>gi|317137119|ref|XP_001727510.2| intracellular protein transport protein (UsoA) [Aspergillus oryzae
            RIB40]
          Length = 1210

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 81/264 (30%), Gaps = 20/264 (7%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIK---DQKLRYYYSQAIRDRLQQLFQKY 439
            +   ++E +        +   +     +    ++   ++  +      + +R      + 
Sbjct: 894  NERLQKELDTAKEKATQDIQAVHDDYTSKCAALEKRAEEAEQKTGQSELAERKSAQELQE 953

Query: 440  ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
              E     +   K      +K              K+  +    E A L +  +    L+
Sbjct: 954  ARERLKKAQSEVKEKEAAARKSAKSEAEGLRKELEKVRSEAKKAEEAALKSANSEIEGLR 1013

Query: 500  EQYQEL---------ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
            ++ +++         A  +   +E  KL   L     E K         R   +      
Sbjct: 1014 KELEQVRSEAKNAEDAARKSAQSEADKLRKELEKVKSEAKRTEDAT---RKSSKSTKSEA 1070

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            + L +++  A L     EA     +    +     ++ +L ++ + E  ++  +  +   
Sbjct: 1071 EGLRKELEKAKLEVKEKEAARKSTQTEITELQRELEKVKLEAKDQAEEARKAKENESVA- 1129

Query: 611  AEKTAILISILHEVHIQIHQIESQ 634
                      + E+  ++ +++S+
Sbjct: 1130 ----QKSTQEIDELRKELEKLKSE 1149


>gi|238489105|ref|XP_002375790.1| intracellular protein transport protein (UsoA), putative [Aspergillus
            flavus NRRL3357]
 gi|220698178|gb|EED54518.1| intracellular protein transport protein (UsoA), putative [Aspergillus
            flavus NRRL3357]
          Length = 1217

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 81/264 (30%), Gaps = 20/264 (7%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIK---DQKLRYYYSQAIRDRLQQLFQKY 439
            +   ++E +        +   +     +    ++   ++  +      + +R      + 
Sbjct: 900  NERLQKELDTAKEKATQDIQAVHDDYTSKCAALEKRAEEAEQKTGQSELAERKSAQELQE 959

Query: 440  ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
              E     +   K      +K              K+  +    E A L +  +    L+
Sbjct: 960  ARERLKKAQSEVKEKEAAARKSAKSEAEGLRKELEKVRSEAKKAEEAALKSANSEIEGLR 1019

Query: 500  EQYQEL---------ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
            ++ +++         A  +   +E  KL   L     E K         R   +      
Sbjct: 1020 KELEQVRSEAKNAEDAARKSAQSEADKLRKELEKVKSEAKRTEDAT---RKSSKSTKSEA 1076

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            + L +++  A L     EA     +    +     ++ +L ++ + E  ++  +  +   
Sbjct: 1077 EGLRKELEKAKLEVKEKEAARKSTQTEITELQRELEKVKLEAKDQAEEARKAKENESVA- 1135

Query: 611  AEKTAILISILHEVHIQIHQIESQ 634
                      + E+  ++ +++S+
Sbjct: 1136 ----QKSTQEIDELRKELEKLKSE 1155


>gi|195035013|ref|XP_001989023.1| GH11490 [Drosophila grimshawi]
 gi|193905023|gb|EDW03890.1| GH11490 [Drosophila grimshawi]
          Length = 727

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 48/151 (31%), Gaps = 21/151 (13%)

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
            L +      EL +++     + +  +  +  ++ +   ++    LL++L          
Sbjct: 483 NLENYELQRQELIRMYEHRIEELIRTQDGVNSDLKRSHNDK-VEALLQKLAECNTRYSDM 541

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQK-----------EEIEKQIAQVTAKGEAE 612
               E     +R+  +Q   L +R      ++           +E E +I +     E  
Sbjct: 542 VPDYEHAKQRIRELEKQLEDLQRRLVEHEEKQNKMYLHMYQQGQEAE-RITRADQAMELA 600

Query: 613 KTA--------ILISILHEVHIQIHQIESQE 635
           +           L+  L     ++  I + E
Sbjct: 601 QRQPDSKVSINELLHQLQSTQDELENIRASE 631


>gi|292616084|ref|XP_002662887.1| PREDICTED: uveal autoantigen with coiled-coil domains and ankyrin
            repeats [Danio rerio]
          Length = 1371

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/330 (9%), Positives = 89/330 (26%), Gaps = 23/330 (6%)

Query: 308  RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL---IPGNRVNFVLLSRGEDPDSFIR 364
            + L      +   ++ +    ++  +  + +   +           V   + ++ +   +
Sbjct: 959  KNLEDKLTNVQEMYNNEKTVGKSQRQVNEKMKDEIESLQQKLHTGLVSGEKHKEVEDHYK 1018

Query: 365  CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
               +    KL+       ++  +R          ++ A     +++    +  + +    
Sbjct: 1019 GQVEELSLKLVELEQQYKEVTIQRA------ELEEQNALCNSEIQSLQQKLNSEFIHLEQ 1072

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             QA++  L    Q    E        +   +   +     +       +    K    RE
Sbjct: 1073 FQAMQSSLNGRLQDAQKECKSLSEAHRLEVQRVHEIEKQLQSQSCEEAQFSQVKDALERE 1132

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
               L   +        Q  E          L+     L      ++     +  +   E 
Sbjct: 1133 VNELRLALREEEETSAQRAE-DVSTLQTELLRATH-ALDDLRSHEEQVTELKAEKHKLEE 1190

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               EL  +L             T       ++   +  AL  +   + ++  +++     
Sbjct: 1191 KVRELGDRLSGLDEQYEDLYRETAQAREGEKRAIAETEALQVKSASIEKEIRDLK----- 1245

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                   E+    +S + E+  +I     Q
Sbjct: 1246 -------ERYEESLSTIGELQKRIQASSEQ 1268


>gi|126282512|ref|XP_001373644.1| PREDICTED: similar to chromosome 14 open reading frame 145
           [Monodelphis domestica]
          Length = 1170

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 92/275 (33%), Gaps = 18/275 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-QAIRDRLQQL 435
            +       W       S      R +             D  ++ +   Q++RD   + 
Sbjct: 228 SATDSHHQFWPSSPLRDSREPQGTRLQKSRSTCVRFLDQPDDLVQLHSLHQSVRDLSNEQ 287

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +     +    R  + +A+ +         +  S  +  +S++   R   +   + N  
Sbjct: 288 ARLGDDLNRELSRRNRSDAQTKKTLEELTVRLDESQRQDSVSERVEKRLQEIERVMQNER 347

Query: 496 AILQEQYQELADIRYDNNELQKLWSF-------LFSDFVEQKYFLPEEIHQRLCERGFGE 548
            +++++ +EL  +     E  +           L    + Q      ++ Q L       
Sbjct: 348 HLVEKRQEELGLMSLQLQEALRKQDANAGENGELMKTKLRQSENEKNQVEQELETSRRML 407

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQKEEIEKQ 601
              +  R+     +     + +     +  +Q +          +  R +  +K+E+EKQ
Sbjct: 408 AQSECSRESLLLQMEDLRVQLSKYQAPKVSRQQISQLDEHGDQRRIRRGIEWEKQELEKQ 467

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           ++++ AK       ++IS + E+   + + + ++A
Sbjct: 468 VSELKAKLNH---NVMISEIQELKRCLEKKDKEKA 499


>gi|118098405|ref|XP_415085.2| PREDICTED: similar to Golgi autoantigen, golgin subfamily a, 3
           [Gallus gallus]
          Length = 1517

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/328 (12%), Positives = 107/328 (32%), Gaps = 22/328 (6%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           + D     AA+  I      +    +         ++    +     T  ++L    L L
Sbjct: 662 EADMLDQEAAFMQIQEAKTMVEEDLQRKLEEFEDEKEQLQKMADSAATLEQELDQVKLTL 721

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
                + E+  +      ++  +   + +      D     Y    ++ RL++      +
Sbjct: 722 HQRDLQLESLQQEHLDLMKQFTMTQEMLHTKEQTLDDLQTQY--DELKARLEEFQSDATS 779

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
           +         +          ++          K   + +   + +L  L    AI   Q
Sbjct: 780 KDDMIQYLQNEKIVLEVALQTAKASQDQLDEGTKRLGEDTEVTSEILEQLRQEMAIRSSQ 839

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYF---------LPEEIHQRLC------ERGF 546
            + L      N  L+K    +   F++QK             +++   L       +   
Sbjct: 840 VENLQQE---NGSLKKQVQKVKEQFLQQKVMVEAYRRDASSKDQLISELKATKKRLDSEM 896

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            EL ++L +   +             +V + +QQ + +    + + ++++E+E ++  + 
Sbjct: 897 KELKRELLQIQVEKQSLETEHSKLQKEVTEVHQQMVEIENHLQSVQKERDEMETRLQSL- 955

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
            + + E+ A L      + +Q+ Q++ +
Sbjct: 956 -QFDKEQMASLAEANQTLKLQVEQMQEE 982


>gi|112180681|gb|AAH21123.2| Cytospin B [Homo sapiens]
          Length = 987

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 89/280 (31%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   +    E+    
Sbjct: 415 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKMENGSLK 474

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   +    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 475 SHLQGEKQKATEASAVEQTAES--CEVQEMLKVARAEKDLLE--LSCNELRQELLKANGE 530

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 531 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 590

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + E    
Sbjct: 591 VEQHRAVKLHNNQLISELESSVIK----------LEEQKSDLERQLKTLTKQMKEETEEW 640

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 641 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 680


>gi|47086097|ref|NP_998430.1| cytoskeleton-associated protein 4 [Danio rerio]
 gi|45709584|gb|AAH67728.1| Zgc:85975 [Danio rerio]
          Length = 421

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 86/281 (30%), Gaps = 13/281 (4%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                   +   + L  +++P + +  + +T+ R          L          ++ Q 
Sbjct: 129 GELSTRRLEDTLQGLQKKTVPELSLRLQEQTDARGREIALLEERLSQRSHPVEERLE-QL 187

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    Q+ ++ LQ+L  +   +        + N         +     S      L ++
Sbjct: 188 TREQ--QSFKEDLQELRARLEKQDVPAALTQQLNTISSAITVLNTANEVSEGNAAVLREQ 245

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            S   A L      +  +     +  A      + +  L           +    +    
Sbjct: 246 ISAVSAELQT---RNREVQSVSEEIKAMRTLIQSTVGSLRKEASEARSSAQTSADQAQSF 302

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ-----GYQQALALYKRFRLLSRQ 594
            L +    + L  LD ++ D  L          D +Q         AL    R     R+
Sbjct: 303 ILKQDQLSDALHSLDTRLTDGLLKLELRLKTAEDSQQLTDISSTLDALVSQHRALE-ERR 361

Query: 595 KEEIEKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQ 634
            E+ EK+ A +       E+   L + + E+  ++ ++E+ 
Sbjct: 362 TEDAEKRSADLQELRSRIEELQRLQAAVEEIRTRLQELENS 402


>gi|8247352|emb|CAB92974.1| CLIP-170 [Rattus norvegicus]
          Length = 1320

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 78/261 (29%), Gaps = 15/261 (5%)

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                D R          +   KD  LR      +R RL+        + S         
Sbjct: 483 QRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLESSKPPGDVDMSLSLLQEISA 542

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
            + + +   +    + + +K     +  + +  +         + +E     + + + N 
Sbjct: 543 LQEKLEVTHTDHQNEVTSLKDHFGTREEMFQKEIKALHAATEKLSKENESLRSKLDHANK 602

Query: 514 ELQ---KLWSFLFSDFVEQKYFLPEEIHQRLC------ERGFGELLKQLDRQVRDAGLWS 564
           E      LW       +       EE+              F EL  Q++R   D     
Sbjct: 603 ENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEI 662

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            + ++     R  + + +   K    L +  +E E  +  V A+ +  +       L E+
Sbjct: 663 ESLQSKQDSERSAHAKEMESMKAK--LMKIIKEKEDSLEAVKARLDTAED----QHLVEM 716

Query: 625 HIQIHQIESQEAMIEGFGKMS 645
              + +++  E   E F   S
Sbjct: 717 EEMLSKLQEAEIKKEKFASAS 737


>gi|24581856|ref|NP_723057.1| quick-to-court, isoform B [Drosophila melanogaster]
 gi|24581860|ref|NP_723059.1| quick-to-court, isoform C [Drosophila melanogaster]
 gi|22945637|gb|AAN10527.1| quick-to-court, isoform B [Drosophila melanogaster]
 gi|22945639|gb|AAN10529.1| quick-to-court, isoform C [Drosophila melanogaster]
 gi|261278409|gb|ACX61590.1| GH09280p [Drosophila melanogaster]
          Length = 566

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 48/151 (31%), Gaps = 21/151 (13%)

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
            L +      EL  ++     + +  +     ++ +   ++    LL++L          
Sbjct: 322 NLENYELQRQELISMYEHRIEELIRSQDSATSDLKRSHNDK-VEALLQKLAECNTRYSDM 380

Query: 564 SATTEANIVDVRQGYQQALALYKRF-----------RLLSRQKEEIEKQIAQVTAKGEAE 612
               E     +R+  +Q   L ++              + +Q +E E +I++     +  
Sbjct: 381 VPDYEQAKQRIRELEKQLEDLQRKLIEHEEKQNKMYLHMYQQGQEAE-RISRADQALDLA 439

Query: 613 KTA--------ILISILHEVHIQIHQIESQE 635
           +           L+  L     ++  I + E
Sbjct: 440 QRQPESKVSINELLHQLQSTQDELENIRASE 470


>gi|56550527|dbj|BAD77934.1| AousoA [Aspergillus oryzae]
          Length = 1216

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 81/264 (30%), Gaps = 20/264 (7%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIK---DQKLRYYYSQAIRDRLQQLFQKY 439
            +   ++E +        +   +     +    ++   ++  +      + +R      + 
Sbjct: 900  NERLQKELDTAKEKATQDIQAVHDDYTSKCAALEKRAEEAEQKTGQSELAERKSAQELQE 959

Query: 440  ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
              E     +   K      +K              K+  +    E A L +  +    L+
Sbjct: 960  ARERLKKAQSEVKEKEAAARKSAKSEAEGLRKELEKVRSEAKKAEEAALKSANSEIEGLR 1019

Query: 500  EQYQEL---------ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
            ++ +++         A  +   +E  KL   L     E K         R   +      
Sbjct: 1020 KELEQVRSEAKNAEDAARKSAQSEADKLRKELEKVKSEAKRTEDAT---RKSSKSTKSEA 1076

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            + L +++  A L     EA     +    +     ++ +L ++ + E  ++  +  +   
Sbjct: 1077 EGLRKELEKAKLEVKEKEAARKSTQTEITELQRELEKVKLEAKDQAEEARKAKENESVA- 1135

Query: 611  AEKTAILISILHEVHIQIHQIESQ 634
                      + E+  ++ +++S+
Sbjct: 1136 ----QKSTQEIDELRKELEKLKSE 1155


>gi|325694304|gb|EGD36218.1| surface protein D [Streptococcus sanguinis SK150]
          Length = 1382

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/316 (11%), Positives = 92/316 (29%), Gaps = 25/316 (7%)

Query: 333 KAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETEN 392
              ++       G     +      D                   +L       K   E 
Sbjct: 82  SHAEMDQALAEAGKARVQLKQEPTVD---LGTARNPEEAASKRETALTDYATQVKEIRET 138

Query: 393 RSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452
            +    ++    E  L    +   +Q L+  Y +A+    Q+  +           Y +K
Sbjct: 139 TA-AYQEQLKAYEKELSQKES--ANQALKDQYDKALASYEQESSRIQAENTQLQADYEQK 195

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL-----LTLINHPAILQEQYQELAD 507
              ++ +     ++ Q      + +      E + +         ++   ++    EL  
Sbjct: 196 RTAYQSELSRIVKINQEKEASYQAALAAYQEERSRILQENAQAKADYQTAMESYTTELKA 255

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEI-----HQRLCERGFGELLKQLDRQVRDAGL 562
            +  N E ++ +    +           E        +  E+ + E + + + +V     
Sbjct: 256 TQEKNAEAKRRYEEKLAQASAHNKAAQAENAAIAERNQAAEKAYQEAVNRYETEVSRLAQ 315

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRL-LSRQKE-EIE------KQIAQVTAKGEAEKT 614
             A  EA        Y++ LA  ++    L +Q + ++       ++I +       +  
Sbjct: 316 VKAEKEAAYQAAMADYEKELARVQKDNAELEQQYQSDLRAYQQEVERIQRDNQAA-KQSY 374

Query: 615 AILISILHEVHIQIHQ 630
              ++ + E + +I  
Sbjct: 375 ETSLAKIQEQNKEIEA 390


>gi|321259235|ref|XP_003194338.1| eukaryotic translation initiation factor 3 [Cryptococcus gattii
           WM276]
 gi|317460809|gb|ADV22551.1| Eukaryotic translation initiation factor 3, putative [Cryptococcus
           gattii WM276]
          Length = 952

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 74/217 (34%), Gaps = 22/217 (10%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLSKKPSLREAAL 487
           R+ L++   +   E S       K     D +   +   Q+ + +  K   +    EA  
Sbjct: 549 RELLEEAKLRREKEASTALAERLKIKAEEDARRAKEEAKQAEIDRVRKQIHETKQAEAMQ 608

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           L   +     L+     + D+             L +  VEQ     +E+ +RL   G  
Sbjct: 609 LAASLAAQGALKVDISNIEDLDSS---------KLVAMQVEQLAKEKKELSERLRIVGKR 659

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLSRQK--EEIEKQIAQ 604
             +  L+R +R         +              A    R + + +Q+  +E+++++ +
Sbjct: 660 --VDHLERAMRKEERPLLAQDYERQKAEDRAAHDRANQIAREQAIEQQRAAKELKQRLGR 717

Query: 605 VTAKGEA-------EKTAILISILHEVHIQIHQIESQ 634
           +    EA       +    L +   E   +I + ++Q
Sbjct: 718 MLEDYEAVKERVESQMQEELKAAKEEAKRKIEEEKAQ 754


>gi|299115429|emb|CBN75594.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 762

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/340 (12%), Positives = 104/340 (30%), Gaps = 18/340 (5%)

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +   +    D ++  +R   + I+ +   L+ G           E      R     +
Sbjct: 340 KSIQNSVKCNEDVNEKVIRELKEEIEKLRQQLLQGGGGGGGGGDNEEAAVLQARMDEMLS 399

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK-NCINHIKDQKLRYYYSQAIR 429
            +K   E    +    + E  N       +        K   +  IK  +++       +
Sbjct: 400 AQKSSWEEKEKLSKQLEEERHNNVNAAIGQVVSEVKAKKMETMKGIKRLQVQKENLSKKQ 459

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            + +  + K  +E       ++K     D   P       +             + A+LL
Sbjct: 460 KQAKADYDKTKSELQADMAQYQKAQTDFDALPPGDPKRDEAEGAMGALLDSIEAKRAILL 519

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                    ++  ++L   R      + +  + L       +  +  E  ++        
Sbjct: 520 AAKESAERTRKDARKLDA-RLTEERAELVASNGLLDQNERLRAAIVAEEREKFQSEKEAL 578

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           +   ++ + R         E +  ++R+G+ Q      +  LL  + +++E +  +  A+
Sbjct: 579 VEAAVEEEKRRILEQKEEMEKSADEIREGFLQ------KEALLEGKIKKLELEGRESDAR 632

Query: 609 GEA--EKTAILISILHE-------VHIQIHQIESQEAMIE 639
            EA       L + L E          ++ ++  + A  +
Sbjct: 633 TEAHMNDKEELENKLAEAEVALDYAQAEVAELRGKIAAKD 672


>gi|303313131|ref|XP_003066577.1| endocytosis protein end4, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240106239|gb|EER24432.1| endocytosis protein end4, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|320036537|gb|EFW18476.1| cytoskeleton assembly control protein Sla2 [Coccidioides posadasii
           str. Silveira]
          Length = 1056

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 76/223 (34%), Gaps = 20/223 (8%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           ++Q LR  Y Q  + RL +L Q+ +   + Y R      ++  +    +  +        
Sbjct: 370 QEQLLRDQYQQQTQGRLAELEQENLNARAQYERDQLLLQQYDKRVKDLEEQLNQLNSNYN 429

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           L       +   +  L       + +Y+ LA +        +L           K     
Sbjct: 430 LQNTSKDDQ---IRALQEQVNTWRSKYEALAKL------YSQLRQEHLDLLQTTKSL--- 477

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSAT-TEANIVDVRQGYQQALALYKRFRLLSRQ 594
               +L      E + + +R  R+    +    +      R  +++          L + 
Sbjct: 478 ----KLKAASAQEAIDKRERLEREMKTKNLELADMIRERDRALHERDRISGGNKEELEKV 533

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           K E+   I +     E  K++ + ++L + + ++  +E  EA+
Sbjct: 534 KRELRLAIERAENA-ERAKSSEISAMLSKYNREMADLE--EAL 573


>gi|295668451|ref|XP_002794774.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226285467|gb|EEH41033.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1449

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 88/253 (34%), Gaps = 31/253 (12%)

Query: 408  LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
             K      KDQ L+    +   +R  Q FQ+   +     +  +      +      +L 
Sbjct: 924  SKPVAEVSKDQVLKLEADRDEIERKFQAFQEKQRQIETSIKAKRDEIPKLETMIQKIQLE 983

Query: 468  QSSLVKGKLSKKPSLREAALLL-----------TLINHPAILQEQYQEL-ADIRYDNNEL 515
              S  +     +  ++E A               L  H + LQ++ ++L A+      E+
Sbjct: 984  IESTTRNLADARKRVQELAAEHKPSKTDDARSVALEKHRSSLQKEIEKLHAETAGVEEEI 1043

Query: 516  QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
            Q L + +      +       +       G  E +  L  +V +A +  +  E   +   
Sbjct: 1044 QALQNKIMEVGGVRLRSQKARV------DGLKEQIDLLAEEVSNAEVSKSKNEKLRIKHE 1097

Query: 576  QGYQQAL-ALYKRFRLLSRQKEEIEKQI------------AQVTAKGEAEKTAILISILH 622
            +    A   L +  R L +  ++IE+Q             AQ   + + E+ A L + L 
Sbjct: 1098 KSCADAEGELEQVKRDLEKLNQDIERQENDVHGTKQKTEQAQEALETKKEELAALKAELD 1157

Query: 623  EVHIQIHQIESQE 635
            E   ++++  + E
Sbjct: 1158 EKVAELNETRASE 1170


>gi|221482257|gb|EEE20612.1| structural maintenance of chromosome domain-containing protein
            [Toxoplasma gondii GT1]
          Length = 1518

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 80/236 (33%), Gaps = 18/236 (7%)

Query: 408  LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
            + + ++   DQ+ R  ++Q    +LQ  ++          R  ++    R +    +   
Sbjct: 806  MPSFLSSHADQQSRDLWAQPACGKLQA-YRNLRQRQEQLDRLGQQIEEKRKRLAEVESRH 864

Query: 468  QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY----QELADIRY----DNNELQKLW 519
             + + K +L  +   R  A L   +     +  +       LA +          +  + 
Sbjct: 865  DAFIEKEQLLSETRARCQANLEEAVASRQQIDGRLRATMDLLAAVEEGARQATKRVHGIK 924

Query: 520  SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
            + + +   E        +     E+    L  ++    ++  L     E    +VR+   
Sbjct: 925  TLIQNLRRENVSPDTAGLSLS-EEKDATRLPGEIRAMEKEMALLKDEAEQREREVREASS 983

Query: 580  QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +          L +Q E +E++ A+       EK   +   L  V+ ++  ++ +E
Sbjct: 984  EV------DFHLRKQVERLEREEARGRRSEAREKRQEVEERLAAVNRRM--LQEEE 1031


>gi|194758902|ref|XP_001961695.1| GF15095 [Drosophila ananassae]
 gi|190615392|gb|EDV30916.1| GF15095 [Drosophila ananassae]
          Length = 2556

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/331 (9%), Positives = 93/331 (28%), Gaps = 19/331 (5%)

Query: 259  QKSIRKDVRRNSSSFIILVEGYMDVLSL--CQAGVQNVVSSLGTALTEYQLRLLWKLSPR 316
            +K+  K  +  S   +    G  D  +    Q     V +    +LT+ Q+    K + R
Sbjct: 1269 RKADPKVAKAGSIFNLTRFTGLYDTNAYYTHQEEKVPVRAPRFVSLTQQQIEKSKKENTR 1328

Query: 317  IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376
             +L    +   +        ++       +R+                 + + A E  + 
Sbjct: 1329 FLL---ENILNIIEGTFLGYVMQFLSDEMSRLREQQKLHRYCMAVQQERWRREAKESGLR 1385

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +    + +L+    ++ ++   D        L         ++        +  ++    
Sbjct: 1386 QKENHMRLLYDELLQHCAWTHSDVSNNYIEWLLEADARHCAEQEAVEMVVELSQQIDADM 1445

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            +K++           +++  +          +  L   +++         ++  ++    
Sbjct: 1446 KKWMESFREIQNPLNRDSLRKGCMDIFLPDPEGVLRDIEIT--------QIVQHVVED-V 1496

Query: 497  ILQEQYQELADIRYDNNELQKLWSFLFS---DFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +    ++EL            L   L              PE I +         ++++L
Sbjct: 1497 LFPRIWEELGPFDIGTTLASDLIDRLIDNDLYLFSTDSEDPE-IPENEPWNESRAIIRKL 1555

Query: 554  DRQVRDAGLWSATTE-ANIVDVRQGYQQALA 583
             R       W    E   + + +  +   + 
Sbjct: 1556 IRGAVQEQSWKGEVERIAVENYKDLFDDVIN 1586


>gi|149040328|gb|EDL94366.1| internexin, alpha [Rattus norvegicus]
          Length = 506

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/316 (9%), Positives = 83/316 (26%), Gaps = 34/316 (10%)

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           G     +  S G D         +    +   +               +      +   L
Sbjct: 63  GLAYRRLPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRAL 122

Query: 405 EIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           E  L        +   +   + + +R+   QL +              ++    + +   
Sbjct: 123 EAELAALRQRHAEPSRVGELFQRELRELRAQLEEASSARAQALLE---RDGLAEEVQRLR 179

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD----NNELQKLW 519
            R  + S  +    +    ++  +    +    + ++    L ++ +     + E+ +L 
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTE--------A 569
           + L +                L           + L  +   +      ++        A
Sbjct: 240 ATLQASSQAAAEVDVAVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299

Query: 570 NIVDVRQGYQQALALYKRF---------------RLLSRQKEEIEKQIAQVTAKGEAEKT 614
              +  +  ++ +  Y+R                  L RQ  E+E++       G  +  
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEER-HSAEVAGYQDSI 358

Query: 615 AILISILHEVHIQIHQ 630
             L S L     ++ +
Sbjct: 359 GQLESDLRNTKSEMAR 374


>gi|145478651|ref|XP_001425348.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392418|emb|CAK57950.1| unnamed protein product [Paramecium tetraurelia]
          Length = 797

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 86/305 (28%), Gaps = 38/305 (12%)

Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
                  ED         K   +K   +     +     + ++      DE  +      
Sbjct: 1   MSDEEPKEDDQDIGDNPDKENPDKQQDDQGDQDNFEDVDDYQDEDDPRDDEDLKNNETSN 60

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
           N    I D  L     Q +R     L    +      GR  +     +     +++L+QS
Sbjct: 61  NLKLTIDDLDLDEN--QKLRKWKDLLTDHVLQVQKLRGRNNRLRGELKKLGDKAEKLVQS 118

Query: 470 SLVKGKL------SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           ++ K KL       K  +L E  +L           E     +   + N    ++   L 
Sbjct: 119 NVRKQKLLEQKLDPKHYNLAEKKILY----------EIKNGKSKQDFANKIDPRILDLLI 168

Query: 524 -----SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                     Q     + +  R       E + +L  ++       A  +     ++   
Sbjct: 169 AIDKMEQSNNQMRESIKALKDRNKNLEQTEDVNKLSNEIVLVEKQIADEDRLRRKMQVIM 228

Query: 579 QQALALYK----------RFRLLSRQKEEIEKQIAQVTAKGEAE-----KTAILISILHE 623
           ++  +  K          R   L  Q + +   I +   +   E     +     + L +
Sbjct: 229 KEQESELKQQQFDCDYEGRLNSLKEQIKTLRDSIKEGQKEELHETRKEFELNNHFAELQK 288

Query: 624 VHIQI 628
           ++ Q+
Sbjct: 289 IYRQM 293


>gi|116051087|ref|YP_790082.1| hypothetical protein PA14_24180 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586308|gb|ABJ12323.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 479

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 80/254 (31%), Gaps = 14/254 (5%)

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
           ++            +N    I+D  LR      + D      +    + +   +++    
Sbjct: 127 WHQMHLWDPESSAGRNHFVLIRDA-LRRNQLGLLVDEEPAAVEPQRLQMAAEEQWYAAGP 185

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA----ILQEQYQELADIRY 510
                        Q      +L++    +   L      H      + ++  +ELA    
Sbjct: 186 AAPKAAPAEPPRKQEDEQAARLAQLVKQQRQQLAALARQHEQRLAGLARQHEEELARREQ 245

Query: 511 DNN-ELQKLWSFLFSD--FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
           D   +L  L S + S    +E++     E+ QRL E+G  +  +  +   R         
Sbjct: 246 DARGQLDILRSEVLSLQQALERQARENAELQQRLLEQG-EQFQRNREELTRQLRFIENQG 304

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
                 +R  +   L        ++  KE++   I  V      E    L   L E+  +
Sbjct: 305 RNETDLLRSEFADELEARV-AVAVAGYKEQV--SIRDVELAYRNELDQQLEQELAELRAE 361

Query: 628 IHQI--ESQEAMIE 639
             ++  +  E ++E
Sbjct: 362 RDRLAAQGPEQLLE 375


>gi|119190459|ref|XP_001245836.1| hypothetical protein CIMG_05277 [Coccidioides immitis RS]
 gi|320035654|gb|EFW17595.1| chromosome segregation protein sudA [Coccidioides posadasii str.
           Silveira]
          Length = 1199

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 68/219 (31%), Gaps = 20/219 (9%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            IR  L ++ Q          +  ++  + +    P ++ ++S              +  
Sbjct: 689 EIRRELDKMDQLITRAVGELQKLEQRRQQIQGSNAPLRQEIKSKRDLLHNKADTLEAKRR 748

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            L  +  +   L +Q     +           +    ++  E +        Q L  +  
Sbjct: 749 ALKNIEANVNALTDQVNA-HEEELSTP-----FEKALTNDEEARLENLSSAVQDLRRQHS 802

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL---------ALYKRFRLLSRQKEE 597
               K+ + + R + L     E     + Q     L          L +  R + +Q +E
Sbjct: 803 ELSSKRSEIETRKSILEVELRENLHPRLDQLIGHYLDGGDDTIQGNLKESQRQIKKQNKE 862

Query: 598 IEKQIAQVTAKGEA-----EKTAILISILHEVHIQIHQI 631
           +EK   ++    ++      + + L     E+  ++ ++
Sbjct: 863 LEKLNRRLEQLEDSIEEKNNEASQLEQRKAEIRRELDEL 901


>gi|118357131|ref|XP_001011815.1| hypothetical protein TTHERM_00391400 [Tetrahymena thermophila]
 gi|89293582|gb|EAR91570.1| hypothetical protein TTHERM_00391400 [Tetrahymena thermophila
           SB210]
          Length = 893

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/286 (10%), Positives = 90/286 (31%), Gaps = 24/286 (8%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +    +   ++   + + +     +    +                 + ++ ++    
Sbjct: 427 EVLENKRREVIKEREEKEITVATYEVQIRQGHDLNEKKQHEVGRLNREHDKLSSVQSDMS 486

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R         R   + +             +   +       + RL +      +L  K 
Sbjct: 487 RGPLE---AKRNNLIRKTQELGKENDLMQREWIKKQTLLVTQNNRLNKIEEDVSQLKTKQ 543

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           ++ E   L    N+    ++  +    ++   NE+ KL   ++ +  +Q+    E  + +
Sbjct: 544 TILEQKKLRLNNNYRIYEKDIREIQNALKNLRNEMNKLNDAIYRNKEKQQKLDNENFNIK 603

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                  E +++L    +++       +    +      + +   ++  L  R+ + +EK
Sbjct: 604 ------SEFVEKLKELEKESVKLEVEIDRLKEEKADLLAEIVESERQILLWERKIQ-LEK 656

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIE--------SQEAMI 638
           ++         +        + E+  +IH++E         QEA+I
Sbjct: 657 EMQDALDPTVGQT------EIQELKREIHRMELRLDDLRKKQEAII 696


>gi|332265070|ref|XP_003281549.1| PREDICTED: cytospin-B isoform 3 [Nomascus leucogenys]
 gi|332265074|ref|XP_003281551.1| PREDICTED: cytospin-B isoform 5 [Nomascus leucogenys]
          Length = 790

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 91/280 (32%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   ++  TE+    
Sbjct: 496 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLERLKTENGSLK 555

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   Q    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 556 SHLQGEKQKATQASAVEQTAES--CEVQEMLKVARAEKDLLE--LSCSELRQELLKANGE 611

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 612 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 671

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + E    
Sbjct: 672 VEQHRAVKLHNNQLISELESNVIK----------LEEQKSDLERQLKTLTKQMKEETEEW 721

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 722 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 761


>gi|330897552|gb|EGH28971.1| cointegrate resolution protein T [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 154

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 45/120 (37%), Gaps = 13/120 (10%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           S   +  Y   + +   L   G    + +  +++        ++   + +       +L 
Sbjct: 17  SLLAKGMYPSIDAVRVELGNTGSKTTISRYLKEIESFDPRPPSSRERMGEELSAMVGSL- 75

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQEAMIE 639
                  L R  EE ++ I Q  +  + ++   L + +  +  ++     Q+++Q+A IE
Sbjct: 76  -------LDRLMEEGDESIQQARSAFDLQRV-GLEAQIASLQSELTTARRQLDAQQAAIE 127


>gi|322498878|emb|CBZ33951.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1762

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            + + L + L  +   ++  L E            EL   + R+   +       E    
Sbjct: 787 QQHRALRAALLEEVQRREQALEENCVAE-RRAHQEELQDVIMREKEASQRALERLERQHA 845

Query: 573 DVRQGYQQALALYKR-----FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH-I 626
             ++  +    +  R       +  +Q E  E +  +  A+ +      L + +   H  
Sbjct: 846 AAQRQVEAEAEMRVRAGEDALAVREKQLEIAEAEWRRRRAEDKEASLQQLTAHVAAQHAK 905

Query: 627 QIHQIESQEAMI 638
           Q+ ++E QEA++
Sbjct: 906 QLAELEEQEAIL 917


>gi|291279725|ref|YP_003496560.1| chromosome segregation protein SMC [Deferribacter desulfuricans
           SSM1]
 gi|290754427|dbj|BAI80804.1| chromosome segregation protein SMC [Deferribacter desulfuricans
           SSM1]
          Length = 1122

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 99/285 (34%), Gaps = 15/285 (5%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           D  +F         ++     L         E      +        +  +   ++  KD
Sbjct: 504 DNYTFGENNSVDFLKEFQQGLLIDFIKGIDEELLLEFSDVIVFDDVKKEEILEFLSK-KD 562

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             +++ +   I +  + L      + +     +    R   +K     L +       L 
Sbjct: 563 ISIKFTFKSNIENIEKWLIASNYEKLNENIFNFNHIYRKFSKKDYRVVLKELREKVESLE 622

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           K+ ++ +  +    + +  + +E  +  ++              LF+ F E K    ++ 
Sbjct: 623 KEIAVLDKEITEIEVKNKKLKEEFIKTESE-----------KDKLFNHFNELKISYEKKK 671

Query: 538 HQRLCERGFGELLKQ-LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            +   E+ F E L + +   +++  +  A+ +    ++ +       +  + + +  QK+
Sbjct: 672 SEIESEKDFIERLSKNIALIIKEKEVLVASVKKAEEEISKLKNDIELIANQLKEIDDQKD 731

Query: 597 EIEKQIAQVTAKGEAEKTA--ILISILHEVHIQIHQIESQEAMIE 639
           +IE++++    K + EK     L+     +   ++  + ++  +E
Sbjct: 732 DIEEELSFYEEKYDQEKDEFTELMIENKRLEESLNAKKREQIYVE 776


>gi|224048744|ref|XP_002198276.1| PREDICTED: Rho-associated, coiled-coil containing protein kinase 2
            [Taeniopygia guttata]
          Length = 1368

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 104/289 (35%), Gaps = 39/289 (13%)

Query: 374  LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------S 425
             + E     +    +E +       +E  +        +  ++DQ     Y         
Sbjct: 801  RMSEKQLKQENNHLQEIKLSLEKQNNELRKERQDADGQMKELQDQLEAEQYFSTLYKTQV 860

Query: 426  QAIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLS 477
            + +++      ++ +  Q+ I E                 K  S++L +S   +    L 
Sbjct: 861  RELKEECEEKTKICKEMQQKIQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLE 920

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            K+  ++E  +   +  H   L E+   +A +       + L S + +   E      EE+
Sbjct: 921  KEKIMKELEIKEMMARHKQELTEKDATIASLE---EANRTLTSDVANLANE-----KEEL 972

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR 593
            + +L E    E + +L  +  + G   A  E  +++ R    QA+     +  R   + R
Sbjct: 973  NNKLKEA--QEQITKLKEEEANVGNIKAQFEKQLLNERTLKTQAVNKLAEIMNRKGPVKR 1030

Query: 594  ------QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                  +++E E +   +  K E EK   ++        +I+++++Q A
Sbjct: 1031 GADTDVRRKEKENRKLHMELKSEREKLTQMMIKY---QKEINEMQAQIA 1076



 Score = 37.2 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 100/300 (33%), Gaps = 29/300 (9%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     + E+   E++  ++     E   +           +       +  + Q+    
Sbjct: 698 KNKIYESIEEAKSEAMKEMEKKLLEERALKQKVENRLLEAEKQRSMLDCDLKQSQQKINE 757

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             +  +D L +  +    +        K+     D K  +Q++    + + +L ++ +  
Sbjct: 758 LLRQ-KDLLSEDVKNLTLKIEQ--ETQKRCLTQNDLKMQTQQVNTLRMSEKQLKQENNHL 814

Query: 484 EAALLLTLINHPAI----------LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF- 532
           +   L     +  +          ++E   +L   +Y +   +     L  +  E+    
Sbjct: 815 QEIKLSLEKQNNELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVRELKEECEEKTKIC 874

Query: 533 -LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRL 590
              ++  Q L +     L  QL+  +  A                  ++ +    +   +
Sbjct: 875 KEMQQKIQELQDER-DSLAAQLEITLTKADSEQLARSIAEEQYSDLEKEKIMKELEIKEM 933

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKT------------AILISILHEVHIQIHQIESQEAMI 638
           ++R K+E+ ++ A + +  EA +T              L + L E   QI +++ +EA +
Sbjct: 934 MARHKQELTEKDATIASLEEANRTLTSDVANLANEKEELNNKLKEAQEQITKLKEEEANV 993


>gi|242819422|ref|XP_002487316.1| dynactin, putative [Talaromyces stipitatus ATCC 10500]
 gi|218713781|gb|EED13205.1| dynactin, putative [Talaromyces stipitatus ATCC 10500]
          Length = 1332

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 76/225 (33%), Gaps = 21/225 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +    RL+ + Q+   E     +  + +             ++  L+  + +     ++
Sbjct: 438 LREALIRLRDMTQQTEAELRAQIKELEDDLEEYTTVKAEYDSVKKKLLASESNVDDLKQQ 497

Query: 485 AALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
              L T +      +E  +ELAD       E+ +L + +      ++     E++    E
Sbjct: 498 ---LETALG----AEEMIEELADKNMRYQEEINELKAAIEDLESLKEISDELELNHVETE 550

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E +   +    +     A  +  I D+     +   L    +          +Q+ 
Sbjct: 551 KQLQEEIDYRESIFNEQSRKVAQQDEIIEDLEYTLARFRELVTNLQSDLEDMR-ASQQLT 609

Query: 604 QVTAKGEAEKTAILIS---ILHE---------VHIQIHQIESQEA 636
           +  A   + ++  ++     L           + I++ ++E++E+
Sbjct: 610 ETEANELSTRSRAMMDLNLRLQASVEKAQSKTIEIELGRMEAEES 654


>gi|255933057|ref|XP_002557999.1| Pc12g11820 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582618|emb|CAP80809.1| Pc12g11820 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1296

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 73/229 (31%), Gaps = 22/229 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + +  +L+ + +K   +        +  A     +   Q+L      +     +   + 
Sbjct: 244 LEELNAKLKVMEKKRADDKEKLKTLEQLQAERDKFETIIQKLQAKYQPQQMEVTELRKK- 302

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                  +       +  + +        E+  L   +  +  E        +  RL E 
Sbjct: 303 -------LKELETRSDDVERMQAEHESLMEMATLDREMAEETAEAFKHECAALRLRLDEL 355

Query: 545 GFG-ELLKQLDRQVRDAGLWSATT-------EANIVDVRQGYQQALAL-YKRFRLLSRQK 595
               E+L++ + +          T       E     +R+   +   +  ++   L  Q 
Sbjct: 356 SLEVEVLREENEEYSQETTPEDRTTHGWLQMEKTNERLREALIRLRDMTQQQESDLRSQI 415

Query: 596 EEIEKQIAQV---TAKGEAEKTAILISI--LHEVHIQIHQIESQEAMIE 639
           +E+E  + +     +  EA K  +L++   + ++  Q+      E MIE
Sbjct: 416 KELEDDLEEYAAVKSDYEAAKERLLVAETNVDDLKQQLETALGAEEMIE 464


>gi|195435942|ref|XP_002065937.1| GK20894 [Drosophila willistoni]
 gi|194162022|gb|EDW76923.1| GK20894 [Drosophila willistoni]
          Length = 571

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/284 (9%), Positives = 86/284 (30%), Gaps = 15/284 (5%)

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
              ++L  ++  +++      ++       +  A  E       + +K  +         
Sbjct: 284 QEVQELRTQTEIMLNHRKMVTSKLNELKIRETTASQEKETIE--SKLKSHEKLSLVLSEP 341

Query: 429 RD---RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            +   +L+ L +    +     + W+   R       + R  Q +     +       E 
Sbjct: 342 EENVGKLEALVEATENKRQTLNQQWQDYRRPLLDTLSTLRNAQEAQQVQIIRNSIEKLEQ 401

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            ++     H  +          +       +++  F+ +   +++         R  ++ 
Sbjct: 402 EIIAKSQQHNELNSSLKNATQSVAPRQEYTRRIHEFIKNIRKQREDIFKVLDDTRQLQKQ 461

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL----------SRQK 595
              +  QL RQ          +  + +  ++ Y+    L+     L          +++ 
Sbjct: 462 LNVVNAQLQRQFNYTDDLLFQSAKHDLHAKKAYKLLAQLHSNCSELVECVSLTGNVTKEI 521

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++E QI     K    +   +   +      I ++++Q   +E
Sbjct: 522 RDLEVQIDGEKLKNVLSRLQQITGDIQRSEQHIQELQTQIRQVE 565


>gi|122920502|pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
           Resolution
 gi|122920505|pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
           Domain At 3.0 Angstrom Resolution
 gi|118133213|gb|ABK60307.1| moesin [Spodoptera frugiperda]
          Length = 575

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 4/110 (3%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                +++  +  E    +  ++   Q+  A    A  +      R    Q      +  
Sbjct: 298 DTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQAN 357

Query: 590 LLSRQ--KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           LL  Q     +E+Q+ Q+ A    E+     + L  +  ++ + ++ EA 
Sbjct: 358 LLEAQDMILRLEEQLRQLQAA--KEELEQRQNELQAMMQRLEETKNMEAA 405



 Score = 37.6 bits (85), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/118 (10%), Positives = 39/118 (33%), Gaps = 2/118 (1%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                +   +++    E   +   E+   E   +L +   +     A        + +  
Sbjct: 310 REEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLE 369

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--KTAILISILHEVHIQIHQIESQ 634
           +Q   L      L +++ E++  + ++      E  +   L   +     ++ +I+ +
Sbjct: 370 EQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQE 427


>gi|118095847|ref|XP_413836.2| PREDICTED: similar to homer-2b [Gallus gallus]
          Length = 467

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 80/272 (29%), Gaps = 28/272 (10%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
           K+I+ S    +M + + ++            +          +     ++   +      
Sbjct: 167 KVIINSTITPNMTFTKTSQKFGQWADSRANTVFGLGFPSEQQLSKFAEKFQEVKEAAKLA 226

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           +   Q+ I   S + +   +      +              G  ++     E   L   +
Sbjct: 227 RDRSQEKIETSSNHSQESGRETPSSTRASSVNGTDDEKASHGGSAEAQLKSENDKLKIAL 286

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
              +   ++++          ELQ L                  +   L E      ++ 
Sbjct: 287 AQSSSNVKKWET---------ELQTLRE------------SNARLTTALQESAAS--IEH 323

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA- 611
             +Q       +    + I ++ +   +     +R   LSR+ +E+E ++     + E  
Sbjct: 324 WKKQFSACKEENDQLRSKIEELEEQCNEINKEKERNAQLSRRLQELETELQDKELELEEL 383

Query: 612 ----EKTAILISILHEVHIQIHQIESQEAMIE 639
               E    L+S    V  Q+   E++   +E
Sbjct: 384 RKQGEVIPQLMSECESVSQQLQDAENKNKDLE 415


>gi|66358110|ref|XP_626233.1| hypothetical protein [Cryptosporidium parvum Iowa II]
 gi|46227274|gb|EAK88224.1| hypothetical protein with possible plus3 domain [Cryptosporidium
           parvum Iowa II]
          Length = 724

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 50/142 (35%), Gaps = 11/142 (7%)

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
            + +++  + N +L +  + +   +     ++   + + L ++      + L+       
Sbjct: 351 IESISNNIFTNEDLLEWKAMIKEFYSNDPDYILS-LPRILQKKA-----RDLNNFQYGDD 404

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT-----AKGEAEKTAI 616
             +   E               L +    L  Q +++E Q+  +       K +  K   
Sbjct: 405 DIALILERKQKKASTQSLSGKTLIETRTNLQTQIKQLEAQLKNIGLDNIVRKSKLAKIDQ 464

Query: 617 LISILHEVHIQIHQIESQEAMI 638
           L   L +   QI +++ Q+ MI
Sbjct: 465 LQQELEQTINQIEKLKLQKEMI 486


>gi|327355173|gb|EGE84030.1| dynactin [Ajellomyces dermatitidis ATCC 18188]
          Length = 1362

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 77/256 (30%), Gaps = 35/256 (13%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +  L+    + ++ +++ + +K   +           +     +   Q+L      + + 
Sbjct: 285 NPVLKE--VEDLKTKIRVMEKKRAEDREKLKSLETLRSERDKFEAIIQKLQTKYQPQQQE 342

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +   +    +  +     +  E    +     D    +++   + ++F   K    E 
Sbjct: 343 IIQLRKQLKDAMARVEEAEHLQAEHESIVEMAALDREMAEEMCEAIKTEFEALKEKAEEL 402

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY--------QQALALYKRF 588
             +    R   E L Q+      +       E     +R+          QQ   L  + 
Sbjct: 403 ELEVEVLREENEELGQVMSPEEKSSQGWLQMERTNERLREALIRLRDMTQQQETDLRNQI 462

Query: 589 RLLSRQKEE------------------------IEKQIAQVTAKGEAEKTAILISILHEV 624
           + L  + E+                        +++Q+  + A+   E+ A       E 
Sbjct: 463 KELEGELEDFAAIKANYEIAKEQLLITEANMEDLKQQVEALGAEEMIEELAEKNMQYQEQ 522

Query: 625 HIQIHQ-IESQEAMIE 639
             ++   IE  E++ E
Sbjct: 523 VNELKAVIEDLESLKE 538


>gi|321469893|gb|EFX80871.1| hypothetical protein DAPPUDRAFT_188104 [Daphnia pulex]
          Length = 958

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 46/344 (13%), Positives = 105/344 (30%), Gaps = 35/344 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           +           D +       + V         DP          A  K    +   V 
Sbjct: 547 EPDDDSTTEDTKDDLGDIKKEKSDVKKEPSETKPDPAVLAAAAAAAAKIKEQKNAEAEVV 606

Query: 384 MLWKRETENRSFNTPDE------RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
              K + +    +  +          +    ++    +  ++        ++ +L+++  
Sbjct: 607 RDLKAQLKKAHIDQREMKLLLDMYKGVGKETRDKTQLMAAERKARLEIDDLKQQLKKM-- 664

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
                 S   R  +K     +     + L +      K        E ALL  +      
Sbjct: 665 ---QASSESKREERKRLADDEAVRKIRSLEEGVHQLQKQVAAQKQEEEALLNEMEVTGQA 721

Query: 498 LQEQYQE----LADIRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQ-RLCERGF 546
            ++  ++    +  +R  ++   KL         +     E+K  L E++    +     
Sbjct: 722 FEDMQEQNSRLIQQLREKDDANFKLMSERIKAQQVHKLQREEKDMLVEQVSTLNMQVEAQ 781

Query: 547 GELLKQLDRQVR-----------DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +++++L+ + R           +  L     E +     +  Q A  L         Q 
Sbjct: 782 NQVVRRLEEKERLLQSSITCAEKELMLRQQAMEMHKRKAIESAQSAADLKLHLEKYHSQM 841

Query: 596 EEIEKQIAQVTAKGEAE--KTAILISILHEVHIQIHQIESQEAM 637
           +E ++ +A+ T   EAE  KT  L   L +V  ++ +++  EA 
Sbjct: 842 KEAQQVVAEKTGTLEAEAYKTRRLYEELAQVKRRVERLKKIEAA 885


>gi|195456656|ref|XP_002075229.1| GK16883 [Drosophila willistoni]
 gi|194171314|gb|EDW86215.1| GK16883 [Drosophila willistoni]
          Length = 644

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEK 600
            E+   +  ++  +    A   +   +    D  +  Q+ +   +R           +E+
Sbjct: 381 EEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEEMERSQRDLFEAQEMIRRLEE 440

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Q+ Q+ A  +  +       L  +  ++ + ++ EA 
Sbjct: 441 QLKQLQAAKDELELRQ--KELQAMLQRLEEAKNMEAA 475



 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 95/273 (34%), Gaps = 7/273 (2%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K + ++     +           E+          +LE++  N    I+++K    +
Sbjct: 229 DQHKMSKDEWEQSIMTWWQEHRSMLREDAMMEYLKIAQDLEMYGVNYFE-IRNKKGTDLW 287

Query: 425 SQAIRDRLQQLFQKYI-TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                  L    Q    T   G+     +N    ++K   + + + +      + +  + 
Sbjct: 288 LGVDALGLNIYEQDDRLTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRIN 347

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  L L + NH   ++ +  +  D++    + ++  +    +  + +  L         +
Sbjct: 348 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQ 407

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           + + + LKQ+  ++  +       +  I  + +  +Q  A       L  +++E++  + 
Sbjct: 408 QEYEDRLKQMQEEMERSQRDLFEAQEMIRRLEEQLKQLQAA---KDELELRQKELQAMLQ 464

Query: 604 QVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
           ++      E      L   +    +++ +I+ +
Sbjct: 465 RLEEAKNMEAAEKIKLEEEIMAKQLEVQRIQDE 497


>gi|118091439|ref|XP_421074.2| PREDICTED: similar to LAR-interacting protein 1b [Gallus gallus]
          Length = 1455

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 78/237 (32%), Gaps = 16/237 (6%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSGYGRYWKKN 453
            + +   +L+  ++  +   +D + R    +   +  + +      + +        K +
Sbjct: 543 KSEEMNTKLQRDVRETMAQKEDMEERITTLEKRYLAAQREATSVHDLNDKLENEIATKDS 602

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
              + +    Q   +  L + KL +     E          P +  E  Q +A +     
Sbjct: 603 MHRQSEDKNRQLQERLELAEQKLQQTLRKAETL--------PEVEAELAQRVAALSKAEE 654

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
               +      + + Q     EE +Q L      E + +   +     +    +E+N   
Sbjct: 655 RHGNI-----EERLRQMEAQLEEKNQELQRARQREKMNEEHNKRLSETVDKLLSESN-ER 708

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           ++   ++ +A  +    L R+ E  +KQI ++  + +     I         +++  
Sbjct: 709 LQLHLKERMAALEDKNSLLREIENAKKQIEELQHEKDKLLLNIEALRAENDQVRLRA 765


>gi|114681599|ref|XP_001160798.1| PREDICTED: myosin, heavy polypeptide 7B, cardiac muscle, beta isoform
            4 [Pan troglodytes]
          Length = 1940

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 86/279 (30%), Gaps = 13/279 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
              +  +  +   L   D        N        +A L+   +     ++ +K       
Sbjct: 1570 ELSQVKAEVDRKLAEKDEECANLRRNHQRAVESLQASLDAETRARNEALRLKKKMEGDLN 1629

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS---LR 483
             +  +L    ++     +       +    +  +   QRL      + +  ++ +     
Sbjct: 1630 DLELQLGHATRQATEAQAATRLMQAQLKEEQAGRDEEQRLAAELHEQAQALERRASLLAA 1689

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E   L   +      +   ++  ++      L  L S       ++K    +    +L  
Sbjct: 1690 ELEELRAALEQGERSRRLAEQ--ELLEATERLNLLHSQNTGLLNQKKKLEAD--LAQLSG 1745

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   ++ + + +     +        ++++    +  L +  + L +   E++ ++ 
Sbjct: 1746 EVEEAAQERREAEEKAKKAITDAA-MMAEELKKEQDTSAHLERMKKTLEQTVRELQARLE 1804

Query: 604  QVTAK---GEAEKTAILISILHEVHIQI--HQIESQEAM 637
            +       G  ++   L + + E+  ++   Q +  EA+
Sbjct: 1805 EAEQAALRGGKKQVQKLEAKVRELEAELDAEQKKHAEAL 1843


>gi|75750474|ref|NP_001028727.1| cytospin-B NSP5a3b [Homo sapiens]
 gi|56699513|tpg|DAA05631.1| TPA_exp: NSP5alpha3beta [Homo sapiens]
 gi|119571304|gb|EAW50919.1| spectrin domain with coiled-coils 1, isoform CRA_e [Homo sapiens]
          Length = 987

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 89/280 (31%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   +    E+    
Sbjct: 415 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKMENGSLK 474

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   +    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 475 SHLQGEKQKATEASAVEQTAES--CEVQEMLKVARAEKDLLE--LSCNELRQELLKANGE 530

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 531 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 590

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + E    
Sbjct: 591 VEQHRAVKLHNNQLISELESSVIK----------LEEQKSDLERQLKTLTKQMKEETEEW 640

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 641 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 680


>gi|73964715|ref|XP_540494.2| PREDICTED: similar to leucine rich repeat containing 45 [Canis
           familiaris]
          Length = 670

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 88/248 (35%), Gaps = 22/248 (8%)

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
             ++   L   +      ++ Q+ + + ++   +    + +          R   +  R 
Sbjct: 365 DNEKNLLLLNQVDELERKVRSQQEQLFLARQ--ELTNTVAELKARAIQAEERLELEKKRS 422

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
           R      ++L    +    +++     E A+   +    A      +EL+ ++       
Sbjct: 423 RQSSEDLEQLRAKEVE--HMTRHLEESERAMQERVQRLEASRLTLEEELSRVK------- 473

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERG-FGELLKQLDRQVRDAGLWSATTEANIVDVR 575
              + L      ++  +  +   RL E+     L ++L   V+      +        V 
Sbjct: 474 --AAALSERGQAEEELMKAKNQVRLEEQQRLAHLEEKLRLLVQARDEAQSACLQQRQTVA 531

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE--- 632
               +A  L  +   L R+ EE+++++    +  + EK A +  +  E+  Q  +++   
Sbjct: 532 DAQARASQLGLQAEGLRRRLEELQQEL----SNKDQEKVAEVTRVRVELQEQNGRLQAEL 587

Query: 633 -SQEAMIE 639
            +QEA+ E
Sbjct: 588 TAQEALKE 595


>gi|18976442|ref|NP_577799.1| hypothetical protein PF0070 [Pyrococcus furiosus DSM 3638]
 gi|18891978|gb|AAL80194.1| hypothetical protein PF0070 [Pyrococcus furiosus DSM 3638]
          Length = 300

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 86/272 (31%), Gaps = 21/272 (7%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER--AELEIHLKNCINHI 415
           DP+   R   +    +     +       ++E         ++                 
Sbjct: 6   DPEEIRRIKQELEELQREKRDIEFKLEELQKELNVWIQKRDEKNLEVRRLREKAREFKAK 65

Query: 416 KDQKLRYY-----YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
           +D+  +         + I  +L  L+Q+ +   +    + +       ++   +R+ +  
Sbjct: 66  RDEINQKIKELKKNKEEINAKLDLLYQEALEYKTKRDEFKQLRRLKMPKEKIEERIEKLE 125

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
                       RE  ++  +     +L  + + +  +   NN+LQ++   +      ++
Sbjct: 126 WELQTNPNITPEREKQIVDQI----QVLATELEIIQQVERFNNKLQEVRKKIEQLKKARR 181

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               E            +L  Q  +            +    +  + +Q+ L + ++ R 
Sbjct: 182 AISLE----------IQQLANQSQQFHEQMIKTYQKADEVKKEADEYHQKVLEIREKIRE 231

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
           + R+  E+E++I +   K +      L + L 
Sbjct: 232 VRRELRELERKILEYDQKHKELLAYKLAARLL 263


>gi|124486959|ref|NP_001074719.1| myosin-13 [Mus musculus]
 gi|56207208|emb|CAI25143.1| myosin, heavy polypeptide 13, skeletal muscle [Mus musculus]
 gi|56238131|emb|CAI25994.1| myosin, heavy polypeptide 13, skeletal muscle [Mus musculus]
          Length = 1938

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/273 (10%), Positives = 87/273 (31%), Gaps = 17/273 (6%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       + +  +E         I+ +       + +  
Sbjct: 1565 VQLELSQVKSELDRKVTEKDEEIEQIKRNSQRAVEAMQSVLDAEIRSRNDALRLKKKMEG 1624

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       K     + Q   SQ  +  +           L+E   L  
Sbjct: 1625 DLNEMEIQLSHANRQVAETQKHLRTVQGQLKDSQLHLDDAQ-----RSNEDLKEQ--LAI 1677

Query: 491  LINHPAILQEQYQELADIRYDNNELQKL-WSFLFS-----DFVEQKYFLPEEIHQRLCER 544
            +     +LQE+ +E+          ++L    L         +  +        ++L E 
Sbjct: 1678 VERRNGLLQEELEEMKVALEQTERTRRLSEQELLDSSDRVQLLHSQNTSLINTKKKL-EA 1736

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               +   +++  ++++       +  I D     ++          L R K+ +E+ +  
Sbjct: 1737 DLAQCQAEVENSIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKD 1796

Query: 605  VTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
            +  + +  +   L      + ++  ++ ++ES+
Sbjct: 1797 LQHRLDEAEQLALKGGKKQIQKLEARVRELESE 1829


>gi|330830680|ref|YP_004393632.1| chromosome segregation protein SMC [Aeromonas veronii B565]
 gi|328805816|gb|AEB51015.1| Chromosome segregation protein SMC [Aeromonas veronii B565]
          Length = 1124

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 79/235 (33%), Gaps = 13/235 (5%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           +Q +  R  +  +    +        +   + R Q+        S L + +  +   L  
Sbjct: 658 AQELSQRTLREQELKWQQLREAWSLQQGQRQERLQRLGQLGEELSRLDQEQAEEAARLAS 717

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ----R 540
           A     L    A L E  ++   +       Q+L +       E +    ++       +
Sbjct: 718 AR--EQLELDEARLAELQEQGEPLTQGLQVAQELLTRCERAVDEARVRREQQQAACQRLQ 775

Query: 541 LCERGFGELL----KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           L      +L+    ++L R   +           + D+     +   L  +     ++  
Sbjct: 776 LELGNLRQLITLGEEELARLGLELAGLKGPDSEAVPDLAPLLAEQRNLEAQQLACHQRLA 835

Query: 597 EIEKQIAQVTAKGEAE--KTAILISILHEVHIQIHQ-IESQEAMIEGFGKMSGRL 648
           E+E+Q+ ++     A+  +   L   L  + ++  + +  ++ + E F ++  RL
Sbjct: 836 ELERQLGELEQARSADHKQLVTLQEKLATLRLERERNLTRRQGLHEQFEELGVRL 890


>gi|302829098|ref|XP_002946116.1| Kar3 member kinesin-like protein [Volvox carteri f. nagariensis]
 gi|300268931|gb|EFJ53111.1| Kar3 member kinesin-like protein [Volvox carteri f. nagariensis]
          Length = 1227

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 93/354 (26%), Gaps = 33/354 (9%)

Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355
           + L   + +  +     +    +   +  D     +          +     +      +
Sbjct: 475 AKLILGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSSTAVFFKMRVAGVLHIFQFETRQ 534

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLV-----DMLWKRETENRSFNTPDERAELEIHLKN 410
           GED    ++ +      K   ++                  N         A+L+  L+ 
Sbjct: 535 GEDICMALQTHINDIMMKRYSKAKASASAEKAQQQLGLSQGNFGPKYEAHVAQLQQELEE 594

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
               I+  + +    +   DRL+          +       +      +       +Q+ 
Sbjct: 595 HRKKIQQMQRQEAELRYESDRLRGELADVKESLAEEQAAKDRLNESISRLTAEVDTLQTE 654

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
           L   +     +             P+   E +             ++L          Q 
Sbjct: 655 LAVARADAAKNAAAGP------ATPSAAVENHAVRDLEALLEARNRELADANDKYRCSQL 708

Query: 531 YFLPEEI------HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
               E I       ++  E   GEL  QL+    D        ++ I ++ +      AL
Sbjct: 709 QKEKELIEKKMQRIEKAKETETGELRSQLEAVQSDIQAQLKLKDSKITEIMEELASINAL 768

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           Y         K E+E+  A              +  L E+   I + E Q+A I
Sbjct: 769 YVES------KAELEQSRAD----------QSELEELRELKADIERKEKQQAAI 806


>gi|206901417|ref|YP_002251355.1| GumN protein [Dictyoglomus thermophilum H-6-12]
 gi|206740520|gb|ACI19578.1| GumN protein [Dictyoglomus thermophilum H-6-12]
          Length = 288

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 6/136 (4%)

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCERGFGELLK 551
            P ++++  + L +  ++  +  K W  L   S  +       +            E  K
Sbjct: 105 DPELVKDLKEVLGEENFEKIKFYKPWVLLFQISSSLAYNTLDVKYGIDFYFINKAEESDK 164

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           ++           A +E    D  +  +  L   K  +   ++ EE   ++      G+ 
Sbjct: 165 KIVALETVEEQLDAFSEIPEEDQLKILKSNLEELKDLK--DKKIEEYYSELLNAYKNGDK 222

Query: 612 EKTAILISILHEVHIQ 627
           EK   L+  L ++  +
Sbjct: 223 EKLEELL--LGDLKKE 236


>gi|194385378|dbj|BAG65066.1| unnamed protein product [Homo sapiens]
          Length = 987

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 89/280 (31%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   +    E+    
Sbjct: 415 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKMENGSLK 474

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   +    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 475 SHLQGEKQKATEASAVEQTAES--CEVQEMLKVARAEKDLLE--LSCNELRQELLKANGE 530

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 531 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 590

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + E    
Sbjct: 591 VEQHRAVKLHNNQLISELESSVIK----------LEEQKSDLERQLKTLTKQMKEETEEW 640

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 641 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 680


>gi|167517621|ref|XP_001743151.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778250|gb|EDQ91865.1| predicted protein [Monosiga brevicollis MX1]
          Length = 543

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/328 (10%), Positives = 89/328 (27%), Gaps = 16/328 (4%)

Query: 320 CFDGDDPGLRAAY-KAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES 378
             D      +    ++ D +    +   ++         D    +  + +  +     E 
Sbjct: 22  IHDTHHHTWQNTTSESYDELSRIRLQLRQLRADNTREELDRSFKVFEHERQQWRVKETEL 81

Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA---IRDRLQQL 435
           +  +  L       +        + +    +           R ++      + DR+  L
Sbjct: 82  IHQLQALLNENATLKHQANLRSESIVHFEGELSEAVSAMSTERQHWLHEREALEDRVSSL 141

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
             +  +      R  ++    R +    Q    +   +    +    +E       +   
Sbjct: 142 QDEIKSMRQQLSREQQQGDALRARCEHLQSRNDNLSQEVDSFQITLRKER------LQWE 195

Query: 496 AILQEQYQELADIRYDNN-ELQKLWSFL--FSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           +   +   EL   +     E Q+L + +      +E        +   L          +
Sbjct: 196 STTNQVQAELETFQNTAQGERQQLKAEVDRLRRDMEDAENKVVRLEGDLQRATQDGNAAR 255

Query: 553 LDRQVRDAGLWSATTE--ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            + ++    L  A     A         +  L      RL  +Q +  + ++  +    +
Sbjct: 256 REAEMLRDDLAQAEERHAAEFEAQAATLRAQLEAQFHTRLAEQQDKAAQAEMQALE-THQ 314

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMI 638
            + T+I      E+  Q      +EA +
Sbjct: 315 EQLTSITKRHQQELEKQQDDFSREEAAL 342


>gi|151101194|ref|NP_080595.2| intraflagellar transport protein 74 homolog [Mus musculus]
 gi|50400509|sp|Q8BKE9|IFT74_MOUSE RecName: Full=Intraflagellar transport protein 74 homolog; AltName:
           Full=Capillary morphogenesis gene 1 protein;
           Short=CMG-1; AltName: Full=Coiled-coil domain-containing
           protein 2
 gi|123227972|emb|CAM19637.1| intraflagellar transport 74 homolog (Chlamydomonas) [Mus musculus]
 gi|123858370|emb|CAM23753.1| intraflagellar transport 74 homolog (Chlamydomonas) [Mus musculus]
          Length = 600

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 98/293 (33%), Gaps = 18/293 (6%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE--RAELEIHLKNCINHIKDQK 419
             +   K+ +  L+   +  +     +  +       +       E   +     IKD +
Sbjct: 88  QRQILDKSYYLGLLRSKISELTTEINKLQKEIEMYNQENSVYLSYEKRAETLAVEIKDFQ 147

Query: 420 LRYYYSQAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +      + D+L    +  + +++++       +  +  D     ++  +  +   +  
Sbjct: 148 GQLADYNMLVDKLNTNTEMEEVMSDYNMLKAQNDRETQSMDVIFTERQAKEKQIRSVEEE 207

Query: 478 KKPSLREAA-LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            +   + A  ++  +   P    +  +          EL  L   L S  ++++    E 
Sbjct: 208 VEQEKQAADGIIKNM--SPEKQVKYIEMKTTNEKLLQELDTLQQQLDSLNMKKESLETEI 265

Query: 537 IHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            H ++ +      E L +L+           +  + + +  +  +Q     +    + RQ
Sbjct: 266 AHSQVKQEAVLLYEKLYELESHRDQMIAEDKSMGSPMEERERLLKQVKEDNQEIASMERQ 325

Query: 595 KEEIEKQIAQVTAK-----GEAEKTA-ILISILHEVHIQIHQIESQEAMIEGF 641
             +I+++I Q + +      + E+    +     E+  +   ++   A IE F
Sbjct: 326 LTDIKEKINQFSEEIRQLDMDLEEHQGEMNQKYKELKKREENMD---AFIETF 375


>gi|114600692|ref|XP_001151622.1| PREDICTED: retinoic acid induced 14 isoform 5 [Pan troglodytes]
          Length = 979

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 101/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 593 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 650

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 651 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLIQLTNVSRAKAEDALSEMKSQYSKVLN 710

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 711 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 769

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 770 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 829

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 830 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 867


>gi|2351768|gb|AAC62252.1| PspA [Streptococcus pneumoniae]
          Length = 653

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 72/192 (37%), Gaps = 9/192 (4%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              +++++  L +      +      K+ AR +     ++       +K  L +  + ++
Sbjct: 200 IDVLQNKVADLEKGIAPYQNEVAELNKEIARLQSDLKDAEENNVEDYIKEGLEQAITNKK 259

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           A L  T       + +  ++L D      EL+K+ + L  +   Q     E     L E+
Sbjct: 260 AELATT----QQNIDKTQKDLEDAEL---ELEKVLATLDPEGKTQDELDKEAAEAELNEK 312

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSRQKEEIEKQI 602
                 +  + +   + L     +A   +V    ++ L      +   L + ++E++  +
Sbjct: 313 VEALQNQVAELEEELSKLEDNLKDAETNNVEDYIKEGLEEAIATKKAELEKTQKELDAAL 372

Query: 603 AQVTAKGEAEKT 614
            ++   G+ E+T
Sbjct: 373 NELGPDGDEEET 384


>gi|37524869|ref|NP_928213.1| poly(A) polymerase I [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784294|emb|CAE13169.1| Poly(A) polymerase (PAP) (Plasmid copy number protein)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 521

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/351 (9%), Positives = 97/351 (27%), Gaps = 31/351 (8%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           D D        +   L     + G R     +  G++        G         ++   
Sbjct: 136 DFDIATNATPEQVRKLFRNCRLVGRRFRLAHIMFGQEVIEVATFRGPHEQTGSDDKNQSQ 195

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY------YSQAIRDRLQQL 435
                    +N   +  ++    +  + +    I D  LR Y          +   +   
Sbjct: 196 QAQSGMLLRDNIFGSIEEDAMRRDFTINSLYYGINDFSLRDYAGGLHDLETGVIRLIGDP 255

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT----- 490
             +Y  +     R  +  ++             S L     +  P+      L       
Sbjct: 256 ETRYREDPVRMLRAIRFASKLNMTISEGTAEPISRLAFLLSNIPPARLFEESLKLLQTGQ 315

Query: 491 ------LINHPAILQEQYQELAD--IRYDNNELQKLWSFLFS----DFVEQKYFLPEEIH 538
                 L+    + Q  +  +       +++ ++++ + +           K   P  + 
Sbjct: 316 GYSTYQLLREYRLFQPLFPLIQRYFTENNDSPMERIVNQVLKNTDYRLQNDKRVNPAFLF 375

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             +      E  ++L ++      +       + D+      ++A+ KR   + R   ++
Sbjct: 376 AAMLWYPLIEHAEKLSQE--GGLAYYDAFALAMNDILDEQCHSIAIPKRLTTIMRDIWQL 433

Query: 599 EKQI-----AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
           + ++      +     E  K       L E+   +      + ++  +G+ 
Sbjct: 434 QLRLPRRHGKRANKLMEHPKFRAAY-DLLELRANVENRNELKELVHWWGEF 483


>gi|324501678|gb|ADY40744.1| Myosin-XVIIIa [Ascaris suum]
          Length = 1155

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 68/229 (29%), Gaps = 30/229 (13%)

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           K      + +  +   +Q    RL+ +  + +   +       +N R  ++       ++
Sbjct: 594 KELETLRESEATQRTRAQKAIQRLRDVEGELLDLKARNEILEVRNTRFDEEVKA----VK 649

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
               K     + + RE      L+          +++ +++    E  +L   +      
Sbjct: 650 EECAKENEGHEQARRERDTAAMLLQ---------EKIDELQSVKAENAELRQSI------ 694

Query: 529 QKYFLPEEIHQRLCERGFGELLKQ-----LDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                  ++H+ L E G G  L+      L R  R      A  E  + D+    Q    
Sbjct: 695 ------AKLHKELEESGDGNDLQSGEVGQLKRAKRQLEAKCAEQEDELDDLAGRAQMLQQ 748

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
              R  + + +      +          E  A     L     Q+  ++
Sbjct: 749 TLTRLEMAAERSRIERNRDLDAKEDEIEELRAQYQRRLRAFEEQLASLQ 797


>gi|320531030|ref|ZP_08032060.1| replicative DNA helicase [Selenomonas artemidis F0399]
 gi|320136696|gb|EFW28648.1| replicative DNA helicase [Selenomonas artemidis F0399]
          Length = 440

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 52/154 (33%), Gaps = 10/154 (6%)

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
           + +G++  +    E ++L  ++       +  + L    +     +  +S +       +
Sbjct: 1   MQEGRIPPQSIEAELSVLGAMMLKANAATQALELLRAEDFYRQAHRAAFSAMEGLVRAGE 60

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 + + L + G    L Q+      A L +A          + Y + +    + + 
Sbjct: 61  PVDIVTVTEALKKAGH---LDQVGGISFLANLTNAVPSTA---NLEHYAKIV----KEKS 110

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           + R   ++  +IA    +G  E    L     ++
Sbjct: 111 ILRSLIDVSTEIAGAAYEGSDEIGQQLSDAERKI 144


>gi|301613795|ref|XP_002936392.1| PREDICTED: myosin-Vc-like [Xenopus (Silurana) tropicalis]
          Length = 1679

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 54/142 (38%), Gaps = 7/142 (4%)

Query: 498  LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG--FGELLKQLDR 555
            +++Q  +L +  + + E ++          E +    + + ++L +      E  K L +
Sbjct: 989  MKDQMDQLTNQLFTDVEKEEKQRMKLEKHFEAQVTEFDTMIEKLKDEIQVLKERNKHLLK 1048

Query: 556  QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA---E 612
            Q  +  L +      I  +    ++         LL  QK ++E Q+ +   +      E
Sbjct: 1049 QAEEEQLVNDGLREEIDQLSIQVKKIPTFQTDIELLENQKRDLEHQLQEQKREMREKLDE 1108

Query: 613  KTAILIS--ILHEVHIQIHQIE 632
                L++   + +V  ++ + E
Sbjct: 1109 MAKQLLNSFEIEDVKARLAEEE 1130


>gi|239615450|gb|EEQ92437.1| dynactin [Ajellomyces dermatitidis ER-3]
          Length = 1362

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 77/256 (30%), Gaps = 35/256 (13%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +  L+    + ++ +++ + +K   +           +     +   Q+L      + + 
Sbjct: 285 NPVLKE--VEDLKTKIRVMEKKRAEDREKLKSLETLRSERDKFEAIIQKLQTKYQPQQQE 342

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +   +    +  +     +  E    +     D    +++   + ++F   K    E 
Sbjct: 343 IIQLRKQLKDAMARVEEAEHLQAEHESIVEMAALDREMAEEMCEAIKTEFEALKEKAEEL 402

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY--------QQALALYKRF 588
             +    R   E L Q+      +       E     +R+          QQ   L  + 
Sbjct: 403 ELEVEVLREENEELGQVMSPEEKSSQGWLQMERTNERLREALIRLRDMTQQQETDLRNQI 462

Query: 589 RLLSRQKEE------------------------IEKQIAQVTAKGEAEKTAILISILHEV 624
           + L  + E+                        +++Q+  + A+   E+ A       E 
Sbjct: 463 KELEGELEDFAAIKANYEIAKEQLLITEANMEDLKQQVEALGAEEMIEELAEKNMQYQEQ 522

Query: 625 HIQIHQ-IESQEAMIE 639
             ++   IE  E++ E
Sbjct: 523 VNELKAVIEDLESLKE 538


>gi|167538193|ref|XP_001750762.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770786|gb|EDQ84467.1| predicted protein [Monosiga brevicollis MX1]
          Length = 2286

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 8/210 (3%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             LR       R R QQ  Q    +        K+      Q+  ++R  Q   ++   ++
Sbjct: 813  ALREQLRNE-RSRHQQEVQNLEQQLRAARSLNKETELTDTQRLQAEREQQQLEMERLAAE 871

Query: 479  KPSLREAALLL--TLINHPAILQE-QYQELADIRYDNNELQKLWSFLF-SDFVEQKYFLP 534
            + +L+E  +L    ++      ++   + L        E+Q L   L       +     
Sbjct: 872  RDALQEDLVLAENNIVRLQEAAEDNHARVLEMEAEFEAEMQTLKEALLVEQRRHESDLAG 931

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +      +    + ++++  Q+R   +     +  +  ++   +QA A       L+R 
Sbjct: 932  AQRFATDNDASHQDRIERILEQLRQYEIELNNNQQQVDRLQAELRQAHA--HHEENLARL 989

Query: 595  KEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            ++E    IA++    EAE     +  L E+
Sbjct: 990  QQEHSLVIAEIHENHEAE-LERTLRELREI 1018


>gi|169607431|ref|XP_001797135.1| hypothetical protein SNOG_06771 [Phaeosphaeria nodorum SN15]
 gi|160701407|gb|EAT85422.2| hypothetical protein SNOG_06771 [Phaeosphaeria nodorum SN15]
          Length = 556

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 64/188 (34%), Gaps = 11/188 (5%)

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
               +R    +  S +  +S +     S    L     L   I+     +   Q  A+  
Sbjct: 14  GGSPSRQSPSRKSSHKPQRSIVRDPYDSPGRQLAIEFNLRLSISDRDFNERLDQAAAERA 73

Query: 510 YDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
             + E       L     E K      E   QR+         ++L+ Q     +     
Sbjct: 74  RLHEE------QLARAAEEHKRVLQSAELEVQRITLEEERAQARRLEAQ--HQEIERLKR 125

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           E    +  +  ++AL + +R    +RQ +E ++Q+    A+ +A++     +   +   +
Sbjct: 126 EKAQQEA-EAQRRALEVKQREAEAARQAQEHQRQLEAAEARIKAQQEQDAAAERQKKEKE 184

Query: 628 IHQIESQE 635
               +++E
Sbjct: 185 EADRKAKE 192


>gi|154493729|ref|ZP_02033049.1| hypothetical protein PARMER_03070 [Parabacteroides merdae ATCC
          43184]
 gi|154086479|gb|EDN85524.1| hypothetical protein PARMER_03070 [Parabacteroides merdae ATCC
          43184]
          Length = 75

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 8/61 (13%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
          I++    I + + +    Y    +R  +      W   PF  EK  SF  +  K  +Y F
Sbjct: 3  IQEAKD-IRLVDFLAGFGYEPVIQRGNSV-----WYKSPFRAEKKASFKVDLHKELWYDF 56

Query: 66 S 66
           
Sbjct: 57 G 57


>gi|145592012|ref|YP_001154014.1| SMC domain-containing protein [Pyrobaculum arsenaticum DSM 13514]
 gi|145283780|gb|ABP51362.1| SMC domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 794

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 82/211 (38%), Gaps = 23/211 (10%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           ++ +R RL   ++KY      YG +     R  D     + L +      + ++  + + 
Sbjct: 182 AEELRGRLAA-YEKYKEVIRRYGGFASVKKRLEDLTKEVETLKEREAALSRDAEDLARKR 240

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           A  L  L  H ++L E Y+  +++             +     E   F    + +RL + 
Sbjct: 241 AEHLAKLREHESMLLEYYKTRSELE------------VLESATEGGTFDQSTV-ERLRDA 287

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              E +++ +  V +      +   ++  +      ++A+ + +  LSR + E+E QIA+
Sbjct: 288 -LREAVEEFEHVVGEELAEKLSKAGDVESL------SIAMMEAYNALSRLQNELEAQIAE 340

Query: 605 VTAKGEA--EKTAILISILHEVHIQIHQIES 633
                E    +   +   + E   ++ ++E 
Sbjct: 341 AKKLYEQYSARVRKIDEEIAEARERLKRLEK 371


>gi|114681593|ref|XP_001160917.1| PREDICTED: myosin, heavy polypeptide 7B, cardiac muscle, beta isoform
            7 [Pan troglodytes]
          Length = 1942

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 86/279 (30%), Gaps = 13/279 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
              +  +  +   L   D        N        +A L+   +     ++ +K       
Sbjct: 1572 ELSQVKAEVDRKLAEKDEECANLRRNHQRAVESLQASLDAETRARNEALRLKKKMEGDLN 1631

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS---LR 483
             +  +L    ++     +       +    +  +   QRL      + +  ++ +     
Sbjct: 1632 DLELQLGHATRQATEAQAATRLMQAQLKEEQAGRDEEQRLAAELHEQAQALERRASLLAA 1691

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E   L   +      +   ++  ++      L  L S       ++K    +    +L  
Sbjct: 1692 ELEELRAALEQGERSRRLAEQ--ELLEATERLNLLHSQNTGLLNQKKKLEAD--LAQLSG 1747

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   ++ + + +     +        ++++    +  L +  + L +   E++ ++ 
Sbjct: 1748 EVEEAAQERREAEEKAKKAITDAA-MMAEELKKEQDTSAHLERMKKTLEQTVRELQARLE 1806

Query: 604  QVTAK---GEAEKTAILISILHEVHIQI--HQIESQEAM 637
            +       G  ++   L + + E+  ++   Q +  EA+
Sbjct: 1807 EAEQAALRGGKKQVQKLEAKVRELEAELDAEQKKHAEAL 1845


>gi|114600690|ref|XP_001151494.1| PREDICTED: retinoic acid induced 14 isoform 3 [Pan troglodytes]
          Length = 981

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 101/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 595 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 652

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 653 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLIQLTNVSRAKAEDALSEMKSQYSKVLN 712

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 713 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 771

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 772 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 831

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 832 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 869


>gi|9506811|ref|NP_062001.1| alpha-internexin [Rattus norvegicus]
 gi|1703221|sp|P23565|AINX_RAT RecName: Full=Alpha-internexin; Short=Alpha-Inx
 gi|204964|gb|AAA41444.1| alpha-internexin [Rattus norvegicus]
          Length = 505

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/316 (9%), Positives = 83/316 (26%), Gaps = 34/316 (10%)

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           G     +  S G D         +    +   +               +      +   L
Sbjct: 63  GLAYRRLPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRAL 122

Query: 405 EIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           E  L        +   +   + + +R+   QL +              ++    + +   
Sbjct: 123 EAELAALRQRHAEPSRVGELFQRELRELRAQLEEASSARAQALLE---RDGLAEEVQRLR 179

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD----NNELQKLW 519
            R  + S  +    +    ++  +    +    + ++    L ++ +     + E+ +L 
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTE--------A 569
           + L +                L           + L  +   +      ++        A
Sbjct: 240 ATLQASSQAAAEVDVAVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299

Query: 570 NIVDVRQGYQQALALYKRF---------------RLLSRQKEEIEKQIAQVTAKGEAEKT 614
              +  +  ++ +  Y+R                  L RQ  E+E++       G  +  
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEER-HSAEVAGYQDSI 358

Query: 615 AILISILHEVHIQIHQ 630
             L S L     ++ +
Sbjct: 359 GQLESDLRNTKSEMAR 374


>gi|317177892|dbj|BAJ55681.1| ATPase [Helicobacter pylori F16]
          Length = 849

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 92/293 (31%), Gaps = 22/293 (7%)

Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
                   + +    D    +    +   E+         + ++ R     S N  +   
Sbjct: 316 KHETIQKCIEIQPDTDIVDSVEYLAQNEVEEFATNVSKFTEAIFNRIDSKSSGNLKELEN 375

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
           ++  ++K     I   + +    + +++R                            K  
Sbjct: 376 QIIENIKKFDEQITYWQEKTKLEEQLKNR-------EKERKKSQNIIDTFTDEDYLDKRE 428

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
             +    +L+  K SK+  L     L  ++N      E  + + +    +    +L   +
Sbjct: 429 KLQENHKALIDLKQSKEVVLIFIEKLKRVVNF-----ESKENMEEKNSYDKVYNQLKQNI 483

Query: 523 FSDFVE------QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
             +  E         F  ++ +    E     L +++   +++ G+     + NI D+ +
Sbjct: 484 CKELEEIDKNIKNGCFDSDDKNIEKLEVKQQTLCQEIGEFLKEKGVI----DENIGDLER 539

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
              Q   + K    L R+ EEI  +I   + +G  +      + + E   +I+
Sbjct: 540 ANCQLADIEKEITDLKRKIEEITNKIKGFSWEGIDKDIENFKNQIEEKLKEIN 592


>gi|308161701|gb|EFO64138.1| Liver stage antigen-like protein [Giardia lamblia P15]
          Length = 1810

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 63/235 (26%), Gaps = 12/235 (5%)

Query: 414  HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             + D + +    +   +RLQ   +      +            +         + +    
Sbjct: 853  QVTDHEQQLIQLKDEAERLQTENRVLAGRSAVSRHLHPNEFDSKSISVSFFEGLLNEPTN 912

Query: 474  GKLSKKPSLREAALLLTLINHPAILQEQY-----QELADIRYDNNELQKLWSFLFSDFVE 528
                   +  E  LL  L        +       +EL  +     E       L     E
Sbjct: 913  SDGVSLTTGEELRLLAILEQGNYEALDALHGMSSEELQLMEQREREFNLKLKELTDRRDE 972

Query: 529  QKYFLPEEIHQRLCER---GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
              Y    E  + + E          ++  R      L     +      R   +  +   
Sbjct: 973  LLYKDDTEALKLIEEEIWAFVDAEEEKKMRLQAADDLLKKRAQEEEDRRRAEIEAKIKEE 1032

Query: 586  KRFRLLSRQKEE---IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            +      R+ +E   + ++  Q     +  + A L+    E   Q+ +IE ++ +
Sbjct: 1033 QDRVAEERRLQEEMIVLQKKQQQEYAEQETRKADLLREAME-KEQLERIEEEQRI 1086



 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 89/323 (27%), Gaps = 53/323 (16%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              +        + +          L +           D+   L++  +     +  ++ 
Sbjct: 939  DALHGMSSEELQLMEQREREFNLKLKELTDRRDELLYKDDTEALKLIEEEIWAFVDAEEE 998

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS--K 478
            +    QA  D L++  Q+             K  + R  +    +     L K +     
Sbjct: 999  KKMRLQAADDLLKKRAQEEEDRRRAEIEAKIKEEQDRVAEERRLQEEMIVLQKKQQQEYA 1058

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIR-YDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            +   R+A LL   +      +EQ + + + +       ++L   L +            +
Sbjct: 1059 EQETRKADLLREAME-----KEQLERIEEEQRIKAEARRRLIDDLEATAERAAAEDRIRV 1113

Query: 538  HQRLCE-----RGFGELLKQLDRQVRDAGLW--SATTEANIVDVRQGYQQALALYKRFRL 590
               L E     +   +  +    + R   L              R+  +     +K  + 
Sbjct: 1114 KAELEEMARIKKELEDAARTASEEKRKLLLQQKEQLEREMAETARRHEEDVARRHKELQA 1173

Query: 591  LSRQKE----------------------------------EIEKQIAQVTAKGEAEKTAI 616
            L  ++                                   +IE++I ++ A+ E E    
Sbjct: 1174 LHEERRKMREQRLASSEPMHELLREDGNDASTDPFSYASLDIERRIKEMKAQLEKEMAEK 1233

Query: 617  LISILHEVHIQIHQIESQEAMIE 639
            +       H  ++ +E + A  +
Sbjct: 1234 IALE----HADLNALEQELAAKK 1252


>gi|301626931|ref|XP_002942638.1| PREDICTED: rootletin-like [Xenopus (Silurana) tropicalis]
          Length = 1544

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 68/212 (32%), Gaps = 9/212 (4%)

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             +  + +++RL+   Q             ++N   RD++   +        + +  ++  
Sbjct: 1288 EHERRILQERLEAARQAVAEGKKQNVALMEQNQVLRDEQAEGELQRAELEGQVRQMQEIL 1347

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             +        + +   LQE+ + L         L  L   +     E++      +    
Sbjct: 1348 RQRQESEGASLRNVQKLQEEREVL------QERLCGLQRAVVQLESEKREVERSSMRLEK 1401

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             +    + L +++R+       +    A    + +       + +      RQ + +E Q
Sbjct: 1402 DKNALKKTLDKVEREKLKTAEDTLRLSAEKGRLDRSL---TTVEQELAEAQRQVQLLEAQ 1458

Query: 602  IAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +A +                 E+ ++I ++ +
Sbjct: 1459 MADMEQTHSQSLMETATRHRQELQLEIERLRN 1490


>gi|288803299|ref|ZP_06408732.1| ATP-dependent chaperone protein ClpB [Prevotella melaninogenica
           D18]
 gi|288334119|gb|EFC72561.1| ATP-dependent chaperone protein ClpB [Prevotella melaninogenica
           D18]
          Length = 862

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 16/143 (11%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSA 565
            I   +    KL         +      +EI +RL +     E +K+ +   + A L   
Sbjct: 388 AIDLMDEAAAKLRME-----RDSVPEELDEITRRLKQLEIEREAIKRENDTEKIAQLDKE 442

Query: 566 TTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI------- 616
             E    +   R  ++    L  + +   ++ E+++ +  +   +G  E+ A        
Sbjct: 443 IAELKEQEHGFRAKWEGERGLVNKIQQDKQEIEQLKYEADRAEREGNYERVAEIRYSRLK 502

Query: 617 -LISILHEVHIQIHQIESQEAMI 638
            L   +  +  Q+   +  +A++
Sbjct: 503 QLEDDIKNIQQQLQTTQDGQAIV 525



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 70/264 (26%), Gaps = 34/264 (12%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + L  +DM              +    +   +     +I        
Sbjct: 220 RIVRGDVPENLKDKQLYSLDMGAMLAGAKYKGEFEERLKSVVKEVMQADGNI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGGGEGAMDAANILKPALARGELRAIGATTLNEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      L++ P  L                   +   L   +             R+ +
Sbjct: 328 ERRFQTVLVDEPDELDAI---------------SILRGLKERYENHHKV-------RIQD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 +K  +R + D  L     +       +   +  ++ +    ++R+ +++E +  
Sbjct: 366 DACIAAVKLSERYISDRFLPDKAIDLMDEAAAKLRMERDSVPEELDEITRRLKQLEIERE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQ 627
            +  + + EK A L   + E+  Q
Sbjct: 426 AIKRENDTEKIAQLDKEIAELKEQ 449


>gi|282882129|ref|ZP_06290770.1| DNA repair protein RecN [Peptoniphilus lacrimalis 315-B]
 gi|281298159|gb|EFA90614.1| DNA repair protein RecN [Peptoniphilus lacrimalis 315-B]
          Length = 555

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 87/272 (31%), Gaps = 13/272 (4%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              I          L+ +             +N      + + + E  L +  N  ++  
Sbjct: 130 HESISLMNHDNQRNLLDDFCDNKHKENLLLLKNLVHEINEIKKDYENKLDSSTNKDREID 189

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           +  Y    I +    L      E               +    +  +++S+     +   
Sbjct: 190 ILNYQINEINE--ANLTSYDDKELEEDYLKLNNVTSTAEALSKTINILKSNYEGFNVEDG 247

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  +  +++ +   L++ Y EL D+R+    L++L + +   ++    F  +++H+
Sbjct: 248 LDSAIGEV-NSILKYNNELKDDYDELEDVRF---RLKELINSI-ESYMNNLNFDGQKLHE 302

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                     L  ++R     G      +  +   ++     L   K    L +  +E E
Sbjct: 303 ------LESRLDLVNRLKSKYGKSIDEIDIFLESTQKRLDFLLNSEKNLEQLKKIIQEKE 356

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           ++   +      E+  +   +  ++  ++ ++
Sbjct: 357 EKALYLAQNISQERGKLAEDLRKKISNELEEL 388


>gi|326665669|ref|XP_001922073.3| PREDICTED: envoplakin, partial [Danio rerio]
          Length = 1702

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 85/270 (31%), Gaps = 31/270 (11%)

Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
                 + E E           ++       +  +  +  R         R+++L  K  
Sbjct: 671 YKRSEMQSEIEIFKQKIVSRERDVVEVKPRLVTKVVTEIERDPKLDVEAARIRELILKLK 730

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN---HPAI 497
            E                    S  +   + V    +KKP ++E  +L  ++     P +
Sbjct: 731 EEIRVL---------------ESNSVNIRTEVTVLENKKPVIKERVILKEVVRLEKDPEM 775

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL-------PEEIHQRLCERGFGELL 550
           L+      ++I  ++   + L   +F    +            P+ I + +         
Sbjct: 776 LKTVMSFKSEISDESIRCKNLNDEIFVIRSQINNLERIIPTIQPKTIIKEVKRVEQD--- 832

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE--EIEKQIAQVTAK 608
             L ++ R   +           + +        Y +   + ++ E  EI  +I ++  +
Sbjct: 833 ADLLQESRTLRVTLEELIQEYSILMKEISSLQVRYSQVETIRQKIEFNEIIHEIYRIDPE 892

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEAMI 638
            E E    L + L E+  +   IES+ ++I
Sbjct: 893 TERE-LRRLRNELIEIGKRRTSIESEISLI 921



 Score = 38.3 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 69/221 (31%), Gaps = 17/221 (7%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +  R      +   L+          S   R  +      +     + + +    +    
Sbjct: 1153 KVERDSKVDKLITGLRTEIDNEGASISRLEREIRNLRIRIESLTKEKSVERIIHKEVIRV 1212

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            +K    EA          ++L +  Q  +     + EL +L + +      +  F  E  
Sbjct: 1213 EKDQAVEA-------ERESLLTQVSQVKSTRTLKDEELLRLKNKITRIQTTRTNFSQE-- 1263

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE- 596
                 E        ++ R+  +        E    ++   +QQ   L      LSRQK  
Sbjct: 1264 -----ETTLIANRDRIKREQNELLQELKRLETQKQEISITFQQQTKLLSERNQLSRQKSI 1318

Query: 597  EIEKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQE 635
            ++E +I ++  +     E   +    L E+  +   +++ E
Sbjct: 1319 KMESEIQRLEREILEVKELINVREKTLIELQKEAKSVQNTE 1359


>gi|197717681|gb|ACH72681.1| pneumococcal surface protein A [Streptococcus pneumoniae]
          Length = 480

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           EL+KL   L  +   Q     E     L ++   EL   L++++ +  +      A+  D
Sbjct: 245 ELEKLLDSLDPEGKTQDELDKEAEEAELDKKA-DELHADLEKEISNLEI--LLGGADPED 301

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                Q  LA   +   L +++ E+EK +  +  +G+ +      +   E+  +  ++++
Sbjct: 302 DTAALQNKLAA--KKAELPKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQN 359

Query: 634 QEAMIE 639
           + A +E
Sbjct: 360 KVADLE 365


>gi|148227238|ref|NP_001087738.1| coiled-coil domain containing 45 [Xenopus laevis]
 gi|51703930|gb|AAH81157.1| MGC84244 protein [Xenopus laevis]
          Length = 889

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 74/253 (29%), Gaps = 20/253 (7%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--SQAIRDRLQQLFQKYI 440
           D     +    +          ++      +   D+  R      +  + +   L     
Sbjct: 638 DEFPFLQISPHTLRRMWNGQMSQVERLTRASQEDDRSERRLQTEVEEAQKKHDLLVDIIR 697

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPA 496
            E     R      R R QK    ++ ++     +  +        L   L+        
Sbjct: 698 KEQGQNQRLKDFRERIRLQKSAQNKMKENRQQAARAKRYYEDYHVQLRAKLMRARTREER 757

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           + ++ ++E   +      LQ++ ++      EQ+    +E+     E  + +    L   
Sbjct: 758 LFKKLFEE--GLELQKERLQEIRTYTREQREEQRKRHKDELDS--MENYYKDQFSMLAEA 813

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           V          E           QA  L+K  R L  + E+  + + ++  + + +    
Sbjct: 814 VTHERQEIQAQEKA---------QAKTLHKIKRELRGKMEKEIQDLQEMIVRTDEDAFFR 864

Query: 617 LISILHEVHIQIH 629
            +     +  ++ 
Sbjct: 865 EL-EAERLKRRLQ 876


>gi|42406348|gb|AAH66079.1| 6330407J23Rik protein [Mus musculus]
          Length = 919

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 22/197 (11%)

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPA 496
             + +   +   +      +       + S L KG+    PS REA L   L  +     
Sbjct: 538 RKKMAKIDKEKDRFEHELQKYRSFYGDLDSPLPKGEAGGPPSTREAELKLRLRLVEEEAN 597

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           IL  +  EL        E + L + L     E        +      R   E L +L + 
Sbjct: 598 ILGRKIVELEV------ENRGLKAELDDLRGEDFNGSSNPLM-----REQSESLSELRQH 646

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           ++     +     N+ D+ +  ++  A   +++         +      +   +  KT  
Sbjct: 647 LQLVEDETELLRRNVADLEEQNKRITAELNKYKY--------KSSGHDSSRHHDNAKTEA 698

Query: 617 LISILHEVHIQIHQIES 633
           L   L    +QI+++  
Sbjct: 699 LQEELKAARLQINELSG 715


>gi|86562857|ref|NP_498427.2| hypothetical protein F23F12.8 [Caenorhabditis elegans]
 gi|90109796|sp|P46504|YLX8_CAEEL RecName: Full=Uncharacterized protein F23F12.8; Flags: Precursor
 gi|71533417|gb|AAZ32811.1| Hypothetical protein F23F12.8 [Caenorhabditis elegans]
          Length = 980

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/120 (10%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
            +  + L      QK     +  ++  +     L ++ + + R+        E+      
Sbjct: 292 NEFLNQLLHIVQHQKTVSERQQQEKFEKMEQERLRQEKEEKARELERRRKLEESETARQA 351

Query: 576 QGYQQALALYKRFRLLSRQKEEIEK-QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +  +QA    ++ R+   +  E+E+ ++ +   + E  +   +   + ++  ++ +++ +
Sbjct: 352 ELDRQATIYAEQERMAMERNRELERIRLEEKKRENERVRQEEIAMEISKI-RELERLQLE 410



 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/275 (8%), Positives = 84/275 (30%), Gaps = 27/275 (9%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
               + +  +  +  +   +        +      +   + ++ +   ++ +  R +   
Sbjct: 285 NGQTMTENEFLNQLLHIVQHQKTVSERQQQEKFEKMEQERLRQEKEEKARELERRRKLEE 344

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            +   +     +      + R     ++ L +  L + K   +   +E   +        
Sbjct: 345 SETARQAELDRQATIYAEQERMAMERNRELERIRLEEKKRENERVRQEEIAMEI------ 398

Query: 497 ILQEQYQELADIRYD-NNELQKLWSFLFSD--FVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +EL  ++ +   + +++   L +   +  Q+     +I Q+  E       ++ 
Sbjct: 399 ---SKIRELERLQLERQRKNERVRQELEAARKYKLQEEERQRKIQQQKVEMEQIRQQEEA 455

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ------------ 601
            ++           E   V   +  +Q      R +   ++K+++EK             
Sbjct: 456 RQEQLRVLEEERARELERVRQEELERQHQMEILRQQEEDQKKKKLEKDREQREQQEAEEL 515

Query: 602 ---IAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
              I +   K   +K     +    +  ++   ++
Sbjct: 516 NRMIIEKEMKENKQKMIEEKNKRKMLEKEMEDRQN 550


>gi|19571761|emb|CAD27803.1| lamC1 [Tetraodon nigroviridis]
          Length = 1597

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/254 (9%), Positives = 75/254 (29%), Gaps = 14/254 (5%)

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
                     +    ++ ++++    +    I D+  + Y        L+   +    E  
Sbjct: 1258 NLTSLPPFNTDALEEDASKIKKEAADLDKLI-DKTEKDY------SELRDDLKGKEQEVR 1310

Query: 445  GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA-LLLTLINHPAILQEQYQ 503
                  K   +  DQ        ++   +     + + REA  +L  L +    + +   
Sbjct: 1311 KLLEKGKSEQQTADQLLARADAAKALAEEAAKKGQSTFREAESILEDLRDFDKRVSDNKT 1370

Query: 504  ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
               +       +            + +  L       L  +   E  +++   V+ A   
Sbjct: 1371 AAEEAMKKIPHINATIQAANEKTRQAEAELGNAAADALEAKTKAEEAQRIASNVQKAST- 1429

Query: 564  SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
                     D  + +     L      +  Q    E+++A+  A+ + +     ++  + 
Sbjct: 1430 -----KTKEDAERAFLDTSKLDGEVGDMMDQLTAAEQELARKKAEADQDMMMASMASDNA 1484

Query: 624  VHIQIHQIESQEAM 637
               + +  +++ A+
Sbjct: 1485 KEAENNARKAKSAV 1498


>gi|330445717|ref|ZP_08309369.1| cell division protein involved in chromosome partitioning
            [Photobacterium leiognathi subsp. mandapamensis
            svers.1.1.]
 gi|328489908|dbj|GAA03866.1| cell division protein involved in chromosome partitioning
            [Photobacterium leiognathi subsp. mandapamensis
            svers.1.1.]
          Length = 1487

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 57/157 (36%), Gaps = 6/157 (3%)

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            L+  L   P        +         EL+ L   +      + YF   +  + L +   
Sbjct: 925  LVSALDADPEQFDALQADYEAADQKLQELKTLIFAVADLAERRHYFSYADAVELLSKS-- 982

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQG---YQQALALYKRFRLLSRQ-KEEIEKQI 602
             EL +QL  ++  A      +  ++   R     Y Q +A  K       +  +E E+++
Sbjct: 983  SELNEQLKAKLATAEQARNRSRESLKQARAQANQYNQLMASLKSSHQAKLETVQEFEREL 1042

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             ++  + + E          E++ ++H   ++ + +E
Sbjct: 1043 QELGVRADIEAEERARLRRDELNERLHSSRNRRSQLE 1079


>gi|242310641|ref|ZP_04809796.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523039|gb|EEQ62905.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 849

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 91/291 (31%), Gaps = 23/291 (7%)

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD--QKLRYYYS 425
           +  FE+   + L       +        +  + +      +     +I+   + ++  Y 
Sbjct: 346 QKQFEEFNSQYLTQNKENLQNAISEFEESNIELKNRNLEMMGQTQENIQKYLESIKQDYL 405

Query: 426 QAIRDRLQQ------LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            ++    +       L ++   + +        N     +   +     S+ V   L+K 
Sbjct: 406 NSLSALKEIQQESLLLIEEQAKQSNHILTQHTNNLEVSLKDVGANLEEMSAKVATNLTKN 465

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  +   ++N  A+L    + L         LQ+  + L +   E +      +  
Sbjct: 466 SETLEQHMTNAVLNFDALLGNTTKTL------QENLQETKNTLVALSKEIE--DAMSVVT 517

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-----ALYKRFRLLSRQ 594
           +  +    +    L +  ++           I D      Q +      L +  +  S++
Sbjct: 518 KSLDSLLNDTANSLSKSTQNIEESLVFANQTISDSFSQTAQEIGKSVHNLLEYNQKNSQE 577

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ--IESQEAMIEGFGK 643
            +EI K+ A        + T  +     E+  ++     ES +  IE FG 
Sbjct: 578 IQEIMKKNAATMDANLTQMTQNVQKYYQEIQDKMRASFGESYKNAIESFGA 628


>gi|225678645|gb|EEH16929.1| condensin subunit Cut3 [Paracoccidioides brasiliensis Pb03]
          Length = 1448

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 88/253 (34%), Gaps = 31/253 (12%)

Query: 408  LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
             K      KDQ L+    +   +R  Q FQ+   +     +  +      +      +L 
Sbjct: 923  SKPVAEVSKDQVLKLEADRDEIERKFQAFQEKQRQIETSIKAKRDEIPKLETMIQKIQLE 982

Query: 468  QSSLVKGKLSKKPSLREAALLL-----------TLINHPAILQEQYQEL-ADIRYDNNEL 515
              S  +     +  ++E A               L  H + LQ++ ++L A+      E+
Sbjct: 983  IESTTRNLADARKRVQELAAEHKPSKTDDARSVALEKHRSSLQKEIEKLHAETAGVEEEI 1042

Query: 516  QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
            Q L + +      +       +       G  E +  L  +V +A +  +  E   +   
Sbjct: 1043 QALQNKIMEVGGVRLRSQKARV------DGLKEQIDLLAEEVSNAEVSKSKNEKLRIKHE 1096

Query: 576  QGYQQAL-ALYKRFRLLSRQKEEIEKQI------------AQVTAKGEAEKTAILISILH 622
            +    A   L +  R L +  ++IE+Q             AQ   + + E+ A L + L 
Sbjct: 1097 KSCADAEGELEQVKRDLEKLNQDIERQENDVHGTKQKTEQAQEALETKKEELAALKAELD 1156

Query: 623  EVHIQIHQIESQE 635
            E   ++++  + E
Sbjct: 1157 EKVAELNETRASE 1169


>gi|224074515|ref|XP_002194204.1| PREDICTED: similar to coiled-coil domain containing 46 [Taeniopygia
           guttata]
          Length = 940

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 101/282 (35%), Gaps = 24/282 (8%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           ++ +  S+   + +   E  +      ++ ++ + +  Q        L + +  E     
Sbjct: 607 KQAKEFSWQLDEIKKRYEQQIVEL--KLEHEQEKTHLFQQHNTAQDCLVRDHQREMEKLE 664

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY----Q 503
              +      + +    R     ++ G  S+   LRE  +    + +  +L   +    +
Sbjct: 665 MQLRAAMAEHESQTQDSRKRDGQVISGLESQICKLREELIQANALRNHQLLDLSFQRDQE 724

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG--FGELLKQLDRQVRDAG 561
           +L   R     L  L   +     + K     E    L +      +  ++  +++  + 
Sbjct: 725 KLKASRDKEAALNSLKMEMEKVISDLKKRHMAETEAALKKANRQLKQAEEEFSQKLAKST 784

Query: 562 LWSATTEANIVDV-RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA---KGEAEKTAIL 617
              A  +A I  +  +  +Q L + +R + ++++ E+ ++Q+        K   ++    
Sbjct: 785 QEIAELKATISFLTEENSRQQLVVEQRLQEVAQKLEDEKQQLKTDNDRAIKALQDEVENY 844

Query: 618 ISILHEVHIQIHQ--IESQEAMI----------EGFGKMSGR 647
            + +++   ++ +  +++QE ++          +G    S R
Sbjct: 845 RAQVYDAQRRLQRNELKAQEQLVTIREEYQKILKGLMPASTR 886


>gi|221475732|ref|NP_788072.3| cytoplasmic linker protein 190, isoform H [Drosophila melanogaster]
 gi|281365119|ref|NP_001162997.1| cytoplasmic linker protein 190, isoform N [Drosophila melanogaster]
 gi|220902058|gb|AAO41206.3| cytoplasmic linker protein 190, isoform H [Drosophila melanogaster]
 gi|272407077|gb|ACZ94283.1| cytoplasmic linker protein 190, isoform N [Drosophila melanogaster]
          Length = 1598

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 80/242 (33%), Gaps = 20/242 (8%)

Query: 405  EIHLKNCINHIKDQKLR-YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
               ++     IKD  ++     + + ++LQ    +   + +      +   + ++ +G  
Sbjct: 1211 LQQVQEANGDIKDSLVKVEELVKVLEEKLQAATSQLDAQQATNKELQELLVKSQENEG-- 1268

Query: 464  QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLW 519
              L   SL   +  ++       L   L      L+E   +L +    +        ++ 
Sbjct: 1269 -NLQGESLAVTEKLQQLEQANGELKEALCQKENGLKELQGKLDESNTVLESQKKSHNEIQ 1327

Query: 520  SFLFSDFVEQKYFLPE--EIHQRLCE--RGFGELLKQLDR--QVRDAGLWSATTEANIVD 573
              L     +++    E  ++ ++L +  +   EL K L +   + + G    T  A    
Sbjct: 1328 DKLEQAQQKERTLQEETSKLAEQLSQLKQANEELQKSLQQKQLLLEKGNEFDTQLAEYQK 1387

Query: 574  VRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            V      A ++       L  +  E+E  + Q       +          E+  Q+  +E
Sbjct: 1388 VIDEMDDAASVKSALLEQLQNRVAELETALRQAN-----DAQKTAYLETKELRRQLESLE 1442

Query: 633  SQ 634
             +
Sbjct: 1443 LE 1444



 Score = 37.6 bits (85), Expect = 6.1,   Method: Composition-based stats.
 Identities = 30/270 (11%), Positives = 89/270 (32%), Gaps = 14/270 (5%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            + +   E+    +L      +  E          +       +      +++ + +   S
Sbjct: 884  HAELQAERSSSSALHTKLSKFSDEIATGHKELTSKADAWSQEMLQKEKELQELRQQLQDS 943

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            Q  + +L+                  KN +    K  ++ L  S+  +  +       E 
Sbjct: 944  QDSQTKLKA----EGERKEKSFEESIKNLQEEVTKAKTENLELSTGTQTTIKDLQERLE- 998

Query: 486  ALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             +    + H   +  E  Q++AD++    E  ++ +   S    +   + E +     E 
Sbjct: 999  -ITNAELQHKEKMASEDAQKIADLK-TLVEAIQVANANISATNAELSTVLEVLQAEKSET 1056

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                 L +++  +    L    T     ++++ + Q     K+F  L  + ++ ++   +
Sbjct: 1057 NHIFELFEMEADMNSERLIEKVTGI-KEELKETHLQLDERQKKFEELEEKLKQAQQSEQK 1115

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +      +++      L E+   + +++  
Sbjct: 1116 L-----QQESQTSKEKLTEIQQSLQELQDS 1140


>gi|145520403|ref|XP_001446057.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413534|emb|CAK78660.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2662

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 80/220 (36%), Gaps = 5/220 (2%)

Query: 411  CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
                ++++KLR    + ++ +  +  QK   E         +  + R +    Q      
Sbjct: 2116 LNQKLEEEKLRIQKEEELKLQQLRQEQKQKEEMYQEQLQQIQLEKQRIEDEKKQLEEAER 2175

Query: 471  LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
            +    + K+   RE  +LL       +   Q +E          LQ+   F     +E++
Sbjct: 2176 IKAEGILKETQRREREILLEKEEKERLWASQLEEQQRQ----RALQEQREFELKQELEKE 2231

Query: 531  YFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                 +   +L E+   E  L++L+ + ++        +  + +  + ++Q     ++  
Sbjct: 2232 KQEKIKFQLQLQEKLLREQELEKLEIEKKNKAEMERLEQLKLEEELRIFKQKELELQKQL 2291

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                +KE+ ++++     K +      L+    E  +++ 
Sbjct: 2292 EEQIRKEKEQQELRIQQEKEKQRLQEELLLKQQEEELRLK 2331


>gi|115928380|ref|XP_788234.2| PREDICTED: similar to Golgi autoantigen, golgin subfamily a, 3,
           partial [Strongylocentrotus purpuratus]
 gi|115951201|ref|XP_001178917.1| PREDICTED: similar to Golgi autoantigen, golgin subfamily a, 3,
           partial [Strongylocentrotus purpuratus]
          Length = 886

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 39/106 (36%), Gaps = 9/106 (8%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLD---RQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           E++         +L +    +LL +L    + V             + D+R+  +     
Sbjct: 387 ERELHERTAAVAQLSKEEQDKLLNELQGMKQDVDVLRNERNRLNDEVQDLRRNMEDDTEA 446

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           Y+      R+ +E+E ++  +    + ++   L +    + ++  +
Sbjct: 447 YR------RRIDELETELQDLKEVLDRQRRNELNNRALALDLERER 486


>gi|90419386|ref|ZP_01227296.1| seryl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
 gi|90336323|gb|EAS50064.1| seryl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
          Length = 427

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%)

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             + +  ++  A   R + L  ++ E  K I +    G+      LI  + E+   I   
Sbjct: 28  EQLLKLDEERRAHLTRLQTLQGRRNEASKAIGKAKGTGDEAGAEELIREIGEIKEAIQDG 87

Query: 632 ESQEAMIE 639
           E  E  I+
Sbjct: 88  EETERRID 95


>gi|14249928|gb|AAH08345.1|AAH08345 Unknown (protein for IMAGE:3531356) [Homo sapiens]
          Length = 963

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 69/220 (31%), Gaps = 18/220 (8%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            R ++  ++      G      +  R   +  P ++ +       +  +      A  L 
Sbjct: 223 KRHREELEQSKQAAGGLRAELLRAQRELGELIPLRQKVAEQERTAQQLRAEKASYAEQLS 282

Query: 490 TLIN-HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
            L   H  + +E               ++          E+       +      R   E
Sbjct: 283 MLKKAHGLLAEENRGLGERANLG----RQFLEVELDQAREKYVQELAAVRADAETR-LAE 337

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           + ++     R+  + +A  E   V V +  Q+     ++   L+ Q EE+ K++A     
Sbjct: 338 VQREAQSTARELEVMTAKYEGAKVKVLEERQRFQEERQK---LTAQVEELSKKLADSDQA 394

Query: 609 GEAEKTA---------ILISILHEVHIQIHQIESQEAMIE 639
            + ++                   +  Q++++++Q +  E
Sbjct: 395 SKVQQQKLKAVQAQGGESQQEAQRLQAQLNELQAQLSQKE 434


>gi|327275728|ref|XP_003222624.1| PREDICTED: keratin, type I cytoskeletal 13-like [Anolis
           carolinensis]
          Length = 606

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 87/290 (30%), Gaps = 22/290 (7%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI---- 415
           +              + +   L D   + E   R +              +    I    
Sbjct: 193 EKSTMQNLNDRLAAYMNKVKYLEDENAQLEVLIREWYQKHGDVGTVRDYTHHYQEIDQLF 252

Query: 416 -KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
            +       Y++ + +           +         +     D  G    L Q +L + 
Sbjct: 253 NELVNETDDYNKILLNIDNTRMTAEDFQIKYQTEAGLRQNVEADINGLRPMLDQLTLARS 312

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK----LWSFLFSDFVEQK 530
            L  +    +  L+    NH   L+E   +      +          +   L     E +
Sbjct: 313 DLEAQFESAKEELITLKKNHQEALRELQSQRGHGDINVEVNAAPGPDVKQRLDQLRAEYE 372

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
             +     +R  E+ F   ++++ +QV  +GL          ++  G QQ   L ++++ 
Sbjct: 373 AIIDNN--RREVEQWFESKMEEVRQQVSSSGL----------EISSGNQQVTDLRRQYQT 420

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           L  + +     I  + +  E  +    +  L ++   I  +E + A + G
Sbjct: 421 LEIELQSALSMIQSLQSNLEDTERRYNLQ-LQQIQSMIQPVEGELASLRG 469


>gi|325184645|emb|CCA19137.1| sphingosine kinase putative [Albugo laibachii Nc14]
          Length = 726

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/318 (9%), Positives = 80/318 (25%), Gaps = 16/318 (5%)

Query: 318 VLCFDGDD-PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376
               D D+           +               L +   D             + L  
Sbjct: 113 WHWQDLDELSDAARQSANAEESEEPHFTEKASCSELSALSLDDSEPWVGNTTLGQQSLQS 172

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           +S   +  +       +         +            +    +    ++++ RL +  
Sbjct: 173 DSSIRMSTIEWHRISEKKDTADTHLNDTIEAFGTTDGSFQSNLDQAIALKSLKQRLNE-- 230

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                +                +    +     +     L      +   L   +  +  
Sbjct: 231 NSSRPQRKNKVAPTLTKQDIPVETPDEKEPSAPADANQDLPTVLQQKLRELDHEVQAYQR 290

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           +  +   E+A  R    E Q L +    +F +        + Q +  +    L K+    
Sbjct: 291 LSSQVKMEVASNR---QEWQALKAA-KENFEQHCEKETARMKQHMQ-QEHTRLEKEAIAH 345

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
            R                ++   Q   L  R +++  Q EE +++      +     T +
Sbjct: 346 ERQWKARLQAAHCTHEKNKETRSQVETL--RAQIVKMQLEERQQR------QKYKANTEV 397

Query: 617 LISILHEVHIQIHQIESQ 634
           L   + E+  Q+ ++  +
Sbjct: 398 LRQRVKELETQLQEMREE 415


>gi|114672270|ref|XP_512024.2| PREDICTED: ralA binding protein 1 isoform 5 [Pan troglodytes]
 gi|114672272|ref|XP_001138341.1| PREDICTED: ralA binding protein 1 isoform 2 [Pan troglodytes]
 gi|114672274|ref|XP_001138420.1| PREDICTED: ralA-binding protein 1 isoform 3 [Pan troglodytes]
 gi|114672276|ref|XP_001138511.1| PREDICTED: ralA-binding protein 1 isoform 4 [Pan troglodytes]
          Length = 655

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 75/256 (29%), Gaps = 35/256 (13%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-----QAIRDRLQQLFQKYI---- 440
            +                L      IK++  R  +      + ++  ++ L ++      
Sbjct: 373 LKQVMKPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGIKDLSKEERLWEV 432

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                  +   + A+ ++ +    + + S   +    ++ +  E  + + L     IL E
Sbjct: 433 QRILTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVINILLAQENEILTE 492

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           Q + LA  ++       L   + S                  +     L  ++       
Sbjct: 493 QEELLAMEQF-------LRRQIAS-----------------EKEEIERLRAEIAEIQSRQ 528

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILI 618
               + TE    +     +    L      L RQ EE+E +   +      E E    L 
Sbjct: 529 QHGRSETEEYSSESESESEDEEELQIILEDLQRQNEELEIKNNHLNQAIHEEREAIIELR 588

Query: 619 SILHEVHIQIHQIESQ 634
             L  + +Q  + E Q
Sbjct: 589 VQLRLLQMQRAKAEQQ 604


>gi|160872606|ref|ZP_02062738.1| conserved hypothetical protein [Rickettsiella grylli]
 gi|159121405|gb|EDP46743.1| conserved hypothetical protein [Rickettsiella grylli]
          Length = 360

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 63/178 (35%), Gaps = 5/178 (2%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKN--ARHRDQKGPSQRLMQSSLVKGKLS---KK 479
            +++  +L++       ++     +++         QK   Q +M+ S  +  L+   K 
Sbjct: 182 LKSLAQQLEEFLPTNSDKNEKTYEFFENKILNNITIQKKLFQEVMRESFGRSHLNQVFKN 241

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E  +L  +      L     +   I   + E+QK++  +   F E    L    ++
Sbjct: 242 VLNAEREILRCITLMRNALMNFSDQNILIFNQHKEIQKIYQLIQDFFKENMDRLQGRENK 301

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           +  E      LK L ++VR         +++   +      A  L  +   L R  ++
Sbjct: 302 QFTEEENFLNLKNLKQKVRSHFQLLEINQSDQFAIDLFIFSADRLLVQLYTLLRLIKK 359


>gi|38505168|ref|NP_113933.2| restin [Rattus norvegicus]
          Length = 1320

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 78/261 (29%), Gaps = 15/261 (5%)

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                D R          +   KD  LR      +R RL+        + S         
Sbjct: 483 QRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLESSKPPGDVDMSLSLLQEISA 542

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
            + + +   +    + + +K     +  + +  +         + +E     + + + N 
Sbjct: 543 LQEKLEVTHTDHQNEVTSLKDHFGTREEMFQKEIKALHAATEKLSKENESLRSKLDHANK 602

Query: 514 ELQ---KLWSFLFSDFVEQKYFLPEEIHQRLC------ERGFGELLKQLDRQVRDAGLWS 564
           E      LW       +       EE+              F EL  Q++R   D     
Sbjct: 603 ENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEI 662

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            + ++     R  + + +   K    L +  +E E  +  V A+ +  +       L E+
Sbjct: 663 ESLQSKQDSERSAHAKEMESMKAK--LMKIIKEKEDSLEAVKARLDTAED----QHLVEM 716

Query: 625 HIQIHQIESQEAMIEGFGKMS 645
              + +++  E   E F   S
Sbjct: 717 EEMLSKLQEAEIKKEKFASAS 737


>gi|47210310|emb|CAF92125.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1080

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 85/273 (31%), Gaps = 36/273 (13%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
              +   ELE    N +   + + +R  +   + ++++        +        K    
Sbjct: 695 RHHESTQELEFRQLNSVQRTRAELIRTQHQTELANQME------YNKRREQELRQKHTVE 748

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
            R Q    +   +      + S      E  +  +      I ++  +     +    + 
Sbjct: 749 VRQQPKSLKVCERWPPGHLERSGMSDANERLIFQS--KELQIKRQFQET---CKIQTRQY 803

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           + L + L            + + +RL E    +L    ++         +T    + + +
Sbjct: 804 KALRNHLLE---STPKSDHKTVLKRLKEEQTRKLAILAEQYDHSINDMLSTQALRLDETQ 860

Query: 576 QGYQQALALYKRFRLL-----------------SRQKEEIEKQI---AQVTAKGEAEKTA 615
           +   Q L +  +  L                   R+ +++E+++     +  +   E+  
Sbjct: 861 EAEYQVLRMQLQQELELLNAYQSKIKIHTDTQHDREVKDLEQRVSIRRALLEQRIEEEML 920

Query: 616 ILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            L +   E    + + ++ E  IE F   S RL
Sbjct: 921 SLQNERSERIRTLLERQAHE--IEAFDSESMRL 951


>gi|302188871|ref|ZP_07265544.1| hypothetical protein Psyrps6_21102 [Pseudomonas syringae pv.
           syringae 642]
          Length = 137

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 2/84 (2%)

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQ--GYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
           LL  L          + +    +  + Q     Q   L  R +   +Q+EE+ +Q+    
Sbjct: 8   LLAILMAASVQVNAETVSEGGAVQPLHQPGAASQIADLQLRLKDSEQQREELTRQLQNAD 67

Query: 607 AKGEAEKTAILISILHEVHIQIHQ 630
            +        L     ++ +Q+ +
Sbjct: 68  PERNNALLTRLRQENQKLKLQLKE 91


>gi|291395934|ref|XP_002714394.1| PREDICTED: tripartite motif-containing 39 [Oryctolagus cuniculus]
          Length = 488

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 69/187 (36%), Gaps = 2/187 (1%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
             + R       +   S     ++   +   I   ++  + ++ L+   Y++ E   L  
Sbjct: 70  RKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYEDQEAVCLIC 129

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ- 579
            +            ++  Q   E+   + L+ L++++++     ++ E    ++++  + 
Sbjct: 130 AISHTHRAHTVVPLDDATQEYKEK-LQKCLEPLEQKLQEITRCKSSEEKKPGELKRLVES 188

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +   + + F  L R+ +E ++ +     + E +    L      +  +   +    A +E
Sbjct: 189 RRQQILREFEELHRRLDEEQQMLFARLEEEEQDILQRLRENAAHLGDKRRDLAHLAAEVE 248

Query: 640 GFGKMSG 646
           G    SG
Sbjct: 249 GKCLQSG 255


>gi|242044548|ref|XP_002460145.1| hypothetical protein SORBIDRAFT_02g023390 [Sorghum bicolor]
 gi|241923522|gb|EER96666.1| hypothetical protein SORBIDRAFT_02g023390 [Sorghum bicolor]
          Length = 644

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 80/244 (32%), Gaps = 31/244 (12%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            +   +   ++ +  + +++  +             + AR         R+++    + +
Sbjct: 291 ANPDPKNQMARDLIKQTREMEAQLKERREWAQGKAIQAARKLGADLTELRVLRMEHDENQ 350

Query: 476 LSKKP-SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
             KK   + E   +  L +   +  E  ++   +   N  +Q+L         E      
Sbjct: 351 RRKKEKQVMEDDTMKRLAH---LENELKKKSGQLDRSNATVQRLEMENAEIRAE---MEA 404

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            ++     E+    LL++  +  +   +W         D+     +     +    +++ 
Sbjct: 405 AKLSASETEKQCQGLLRKEKKDSKRLEVWERQKAKLKEDIADCKTKITQAERELAEVNKA 464

Query: 595 KEEIEKQIAQVT-------------------AKGEAEKTAILISILHEVHIQ-----IHQ 630
            + +EK+I + T                   AK ++++    +    EV  Q     +H+
Sbjct: 465 IKNMEKKIREDTRVKEENMVLLEEERRKKEAAKADSDRRLEELRRKKEVESQCYKDDLHR 524

Query: 631 IESQ 634
           ++ +
Sbjct: 525 LQDE 528


>gi|261199356|ref|XP_002626079.1| dynactin [Ajellomyces dermatitidis SLH14081]
 gi|239594287|gb|EEQ76868.1| dynactin [Ajellomyces dermatitidis SLH14081]
          Length = 1362

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 77/256 (30%), Gaps = 35/256 (13%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +  L+    + ++ +++ + +K   +           +     +   Q+L      + + 
Sbjct: 285 NPVLKE--VEDLKTKIRVMEKKRAEDREKLKSLETLRSERDKFEAIIQKLQTKYQPQQQE 342

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +   +    +  +     +  E    +     D    +++   + ++F   K    E 
Sbjct: 343 IIQLRKQLKDAMARVEEAEHLQAEHESIVEMAALDREMAEEMCEAIKTEFEALKEKAEEL 402

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY--------QQALALYKRF 588
             +    R   E L Q+      +       E     +R+          QQ   L  + 
Sbjct: 403 ELEVEVLREENEELGQVMSPEEKSSQGWLQMERTNERLREALIRLRDMTQQQETDLRNQI 462

Query: 589 RLLSRQKEE------------------------IEKQIAQVTAKGEAEKTAILISILHEV 624
           + L  + E+                        +++Q+  + A+   E+ A       E 
Sbjct: 463 KELEGELEDFAAIKANYEIAKEQLLITEANMEDLKQQVEALGAEEMIEELAEKNMQYQEQ 522

Query: 625 HIQIHQ-IESQEAMIE 639
             ++   IE  E++ E
Sbjct: 523 VNELKAVIEDLESLKE 538


>gi|226295006|gb|EEH50426.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1448

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 88/253 (34%), Gaps = 31/253 (12%)

Query: 408  LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
             K      KDQ L+    +   +R  Q FQ+   +     +  +      +      +L 
Sbjct: 923  SKPVAEVSKDQVLKLEADRDEIERKFQAFQEKQRQIETSIKAKRDEIPKLETMIQKIQLE 982

Query: 468  QSSLVKGKLSKKPSLREAALLL-----------TLINHPAILQEQYQEL-ADIRYDNNEL 515
              S  +     +  ++E A               L  H + LQ++ ++L A+      E+
Sbjct: 983  IESTTRNLADARKRVQELAAEHKPSKTDDARSVALEKHRSSLQKEIEKLHAETAGVEEEI 1042

Query: 516  QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
            Q L + +      +       +       G  E +  L  +V +A +  +  E   +   
Sbjct: 1043 QALQNKIMEVGGVRLRSQKARV------DGLKEQIDLLAEEVSNAEVSKSKNEKLRIKHE 1096

Query: 576  QGYQQAL-ALYKRFRLLSRQKEEIEKQI------------AQVTAKGEAEKTAILISILH 622
            +    A   L +  R L +  ++IE+Q             AQ   + + E+ A L + L 
Sbjct: 1097 KSCADAEGELEQVKRDLEKLNQDIERQENDVHGTKQKTEQAQEALETKKEELAALKAELD 1156

Query: 623  EVHIQIHQIESQE 635
            E   ++++  + E
Sbjct: 1157 EKVAELNETRASE 1169


>gi|190338653|gb|AAI62568.1| Spectrin, beta, erythrocytic [Danio rerio]
          Length = 2357

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 50/403 (12%), Positives = 111/403 (27%), Gaps = 40/403 (9%)

Query: 244  KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
            + + L N   AL +      +D  R   +   +++G  D         Q           
Sbjct: 1103 EAEQLLNLHDALRHDMDGHEEDYHRVKDTGAAVIQGQED-------DPQYQQLEQRLEGL 1155

Query: 304  EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
            +     L K+        D      +    A             +  V      D     
Sbjct: 1156 DKGWGELHKMWDSRKNFLDQGLGFQQFMRDAKQADAILNNQEYTLAHVDKPDTLDGAEKA 1215

Query: 364  RCYGKTAFEKLIVESLP------------LVDMLWKRETENRSFNTPDERAELEIHLKNC 411
                +     +                    + L+  + +++  +  +   + +   K  
Sbjct: 1216 LKKHEDFVTTMDANKEKILSTLETGQRLVDSENLYSGKVKDKMSSIEERNKKNQDKAKEV 1275

Query: 412  INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
               +KD +   ++ Q      Q L      +           AR+   K    +   + L
Sbjct: 1276 SGKLKDNRELQHFLQN----TQDLTLWINEKMLTAQDTSYDEARNLHSKWQKHQAFMAEL 1331

Query: 472  VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
               K       +E      + + P         LA +        +LW  L S   E+  
Sbjct: 1332 ASNKDWLHNIGKEGQ--ELMESKPEFEPIVKDRLAKLH-------ELWDKLESTTQEKAR 1382

Query: 532  FLPEEIHQRLCERGFGEL---LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             L +     L ++   +L   L +L +Q++   +     +    ++     Q      R 
Sbjct: 1383 LLFDANRSELFDQSLADLKKWLAELQQQLQ-GDVEEEVKDLTSANILLKKHQITENQVRD 1441

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            R   R+ EE+++ + Q  +  E +    +      +     ++
Sbjct: 1442 RA--RELEELQEAVEQHGSLREDQPELEI--EQQNLQRDFQKL 1480


>gi|126277437|ref|XP_001369357.1| PREDICTED: similar to beta myosin heavy chain [Monodelphis domestica]
          Length = 1935

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 56/155 (36%), Gaps = 8/155 (5%)

Query: 488  LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC----- 542
            +  +     +LQ + +EL  +       +KL      +  E+   L  +    +      
Sbjct: 1671 IAIVERRNNLLQAELEELRAVVEQTERARKLAEQELIETSERVQLLHSQNTSLINQKKKM 1730

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +    +L  +++  V++        +  I D     ++          L R +E +E+ I
Sbjct: 1731 DADLSQLQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAYLERMRENMEQTI 1790

Query: 603  AQVTAKGEAEKTAILI---SILHEVHIQIHQIESQ 634
              +  + +  +   L      L ++  ++ ++E++
Sbjct: 1791 KDLQHRLDEAEQIALRGGKKQLQKLEARVRELENE 1825


>gi|55957503|emb|CAI15527.1| lamin A/C [Homo sapiens]
          Length = 491

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 94/281 (33%), Gaps = 34/281 (12%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             R     A       +L       KR  E    +   + A+LE  L      ++D+ LR
Sbjct: 50  QARLKDLEALLNSKEAALSTALSE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLR 108

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                   +RLQ + ++   + + Y    ++  R  + +       +    + +L+    
Sbjct: 109 RV---DAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ 165

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                          +  +   ++   +    EL+K +S    +  +        +    
Sbjct: 166 --------------ELRAQHEDQVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAH 208

Query: 542 CERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            E     + +  L  Q+       A  EA + D+     +     +R         E E+
Sbjct: 209 EELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRL------LAEKER 262

Query: 601 QIAQVTAKGEA--EKTAILISILHEVHIQIHQ----IESQE 635
           ++A++ A+ +   ++   L+ I   + ++IH     +E +E
Sbjct: 263 EMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEE 303


>gi|332531213|ref|ZP_08407126.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624]
 gi|332039320|gb|EGI75733.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624]
          Length = 527

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 81/239 (33%), Gaps = 24/239 (10%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             +     + +   ++     +  E + +    ++  +       S   ++S L      
Sbjct: 113 PSMMPQVLEQVARLIEFAQPAFGGEDTRFHERMQQTLQALRDPETSVIRVRSLLADFNHR 172

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---------FSDFVE 528
              +  E + +   +    +LQ   + + ++  D+  LQ   + L              E
Sbjct: 173 LSFAAEEQSEIRLALF--KLLQLIIKNIGELSPDDAWLQGQINALQAAAQPPLTLRRLDE 230

Query: 529 QKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
            ++ L + I ++   +G   E  + L + +       +   A+  D ++  + +L   ++
Sbjct: 231 VEHQLKDVIFKQTEAKGRAIEAQESLRQMLAAFITRLSQVTASSSDYQEKMEDSLRDLEQ 290

Query: 588 FRLLS------RQKEEIEKQIA-QVTAKGEAEKTAILI-----SILHEVHIQIHQIESQ 634
            + L       R      + +  +    GE  ++         + L ++  ++ ++ +Q
Sbjct: 291 AKTLEDIGPVLRGLIRATRDMRLETVNVGEELQSMRAQVQAKEAELRKLQAELERLSAQ 349


>gi|326926253|ref|XP_003209317.1| PREDICTED: hypothetical protein LOC100546260 [Meleagris gallopavo]
          Length = 844

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 80/247 (32%), Gaps = 5/247 (2%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +      E    ++  I   +    R    Q     L Q  ++   +             
Sbjct: 235 HEFKVMEEKIKAMEKEIKFYEGSLEREKGLQEELQSLYQDLERCRADGKSKTERITSLTM 294

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH-PAILQEQYQELADIRYDNNE 514
               K    + ++  L   +  K+ + +++ +L   +     ++    +  A ++     
Sbjct: 295 ELKTKQDELKNVKEDLRYFQEEKEAAHKQSQVLRRELESIKEVVSSNLESWAGLK--EEI 352

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
            Q++ +       E      +    +       E +K L        L +   + ++   
Sbjct: 353 FQQIRTVSKEALTEIPKLNQKLAKSQRENECLQEKVKHLTLVADTVELKTQQLQTSLQQG 412

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIE 632
            +   +   L K    L+ Q E  E ++ +VTA+ +   +   +  + L     ++ +++
Sbjct: 413 SELQSRCHELQKETLDLTNQVETTEHKLQKVTAEMDHYKKLLMVKSAELDVCQNELKKMK 472

Query: 633 SQEAMIE 639
           ++  + E
Sbjct: 473 NENGISE 479


>gi|326667539|ref|XP_002661971.2| PREDICTED: citron Rho-interacting kinase-like, partial [Danio
           rerio]
          Length = 2089

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 88/210 (41%), Gaps = 18/210 (8%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK-KPSLREAA 486
           +  +L    ++         +  ++ +R + +    + ++Q   V+ K S+ + S+ E  
Sbjct: 451 MEKKLHLKSKELQDTQDKCHKMEQEISRFQRKMTDLESVLQQKDVELKASETQRSILEQD 510

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
           L   +    ++ +   Q   ++  ++++  +L   +     + +    +E H +L E   
Sbjct: 511 LATYITECSSLKRSLEQARVEVSQEDDKALQLLHDIREQSNKLQEIKEQEYHAQLEE--M 568

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
              ++QL+  +  A   S   E  + + RQ  ++          L R+  E +++I +  
Sbjct: 569 QVTIRQLEEDLSAARRRSDLYETELRESRQTSEE----------LKRKAAEYQQRIQKAK 618

Query: 607 AKGEAEKTAILISILH----EVHIQIHQIE 632
            +G+AE    L+S L     E  ++I +++
Sbjct: 619 EQGKAE-VEELLSKLEKTNAEQQLKIQELQ 647


>gi|312621634|ref|YP_004023247.1| hypothetical protein Calkro_0529 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202101|gb|ADQ45428.1| hypothetical protein Calkro_0529 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 372

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 3/112 (2%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
              +     + +    +E+   L   G    LK L+ +      W     +    V Q  
Sbjct: 4   LEEILQRLEKAEE-DLKEMRVSLDIDGLESELKSLENETSKPEFWQDIENS--QKVLQKI 60

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           ++     +RF+ L  Q E+++        +G  E +  L   L  +  +I +
Sbjct: 61  KRIKDKIERFQKLYSQWEDLKVLTELSIEEGNHEMSEELEKELISLERKIDE 112


>gi|293355172|ref|XP_239718.5| PREDICTED: hook homolog 2 [Rattus norvegicus]
          Length = 667

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 89/283 (31%), Gaps = 18/283 (6%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +  ++     A ++L+ +  P               N  +   +   +        +   
Sbjct: 123 EESVQHVVMEAIQELMTKDTPD---------SLSPENYGNFDTQSRRYYFLSEEVEEGGD 173

Query: 420 LRYYYSQA------IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           L+ +Y         + +  Q L Q+        GR   ++A     K       Q   ++
Sbjct: 174 LQQHYLDLERQLVLLSEEKQSLAQENAALRERVGRSEVESASGLTAKKLLLLQSQLEQLQ 233

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +  +  S RE   L  +     + + Q +  A       E Q L   +       +   
Sbjct: 234 EENFRLESSREDERLRCVELEREVAELQQRNQALASLS-QEAQALKDEMDELRQSSERAR 292

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             E     C R  GE L++L RQVR     +A        +    ++A +L  +     R
Sbjct: 293 QLEATLNSCRRRLGE-LQELRRQVRQLEERNAGHAERTRQLEDELRRAGSLRAQLEAQRR 351

Query: 594 QKEEIEKQIAQVTAKGEAEKTA-ILISILHEVHIQIHQIESQE 635
           Q +E++ Q  +   K E        +    ++  +  +    E
Sbjct: 352 QMQELQGQWQEEAMKAEKWLFECQNLEEKCDLLTKEKERLLTE 394



 Score = 37.9 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 77/237 (32%), Gaps = 14/237 (5%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  DE  +     +     +   + R    Q +R +++QL ++         +   +  R
Sbjct: 279 DEMDELRQSSERARQLEATLNSCRRRLGELQELRRQVRQLEERNAGHAERTRQLEDELRR 338

Query: 456 HRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLT--LINHPAILQEQYQEL----ADI 508
               +     +  Q   ++G+  ++    E  L     L     +L ++ + L      +
Sbjct: 339 AGSLRAQLEAQRRQMQELQGQWQEEAMKAEKWLFECQNLEEKCDLLTKEKERLLTERDSL 398

Query: 509 RYDNNELQ--KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           R  N EL+  +L     +         P  +     E    EL + L R   +       
Sbjct: 399 RETNEELRCAQLQPRGLNQAGLSLDPTPSGLENLAAEILPAELRETLVRLQLENKRLCQQ 458

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
             A+     +  +      +    L  Q+   ++Q++++ A     +   L   L E
Sbjct: 459 EAADRERQEELQRHLEEANRARHGLEAQQRLNQQQLSELRA-----QVEELQKALQE 510


>gi|290997307|ref|XP_002681223.1| kinesin-1 [Naegleria gruberi]
 gi|284094846|gb|EFC48479.1| kinesin-1 [Naegleria gruberi]
          Length = 746

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 65/207 (31%), Gaps = 10/207 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            ++ +   + +    + NA   +      +L     V  K ++    +    +     + 
Sbjct: 454 IREQVLREAEFSLQMRDNAAREESMTIKLQLQNKIDVARKETQLYFQKYEQAITHKEYYK 513

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFV------EQKYFLPEEIHQRLCERGFGEL 549
             L     +L D      +LQ         +       E    + E++   L      +L
Sbjct: 514 NKLATFQSKLEDQNLIIGKLQIERDEYKEKYEALKSETENGSLISEKLKLELEAAN-EQL 572

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-SRQKEEIEKQIAQVTAK 608
                 +      + + T+    D R    +     +    L  ++ E +  ++ +  +K
Sbjct: 573 QSARKERDTIEKTFYSRTQQYESDKRGTIDRYEQEKRNIYELAKKEIETLRAKLQESESK 632

Query: 609 GEAEKTAILISILHEVHIQIHQIESQE 635
              EK    I +L E   Q+ Q + +E
Sbjct: 633 --TEKQREYIRVLKEKTAQLIQAQQEE 657


>gi|224135043|ref|XP_002321969.1| predicted protein [Populus trichocarpa]
 gi|222868965|gb|EEF06096.1| predicted protein [Populus trichocarpa]
          Length = 768

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 58/152 (38%), Gaps = 15/152 (9%)

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
              ILQ++   +A  R    ELQ+L + L +  + +   +  +       +   +   +L
Sbjct: 60  DDDILQQRIHSIARQR---EELQQLETELRAQVIARSEIMEMQNRFHAQIQEHEDAAAKL 116

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALAL-----YKRFRLLSRQKEEI------EKQI 602
             Q+ + G      +  + + +     A+ L     + +  LL  Q +E+      E+  
Sbjct: 117 QEQLHERGQTIHDLDRRMEE-KDRELHAIKLDNEAAWAKEDLLREQNKELATFRHVERDH 175

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           ++       ++   L   + +   QI +++ Q
Sbjct: 176 SEAERAQHIQQLRDLQEHIQDKERQILELQEQ 207


>gi|254423501|ref|ZP_05037219.1| ATPase, AAA family [Synechococcus sp. PCC 7335]
 gi|196190990|gb|EDX85954.1| ATPase, AAA family [Synechococcus sp. PCC 7335]
          Length = 941

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 42/156 (26%), Gaps = 24/156 (15%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC----ERGFGELLKQLDRQVRDAGL 562
            I   +    KL   + S   E +      +   +     E              R AG+
Sbjct: 397 AIDLIDEAAAKLKMEIDSKPEELEIIDRRLMQLEMEKLSLESEKAAGSSSRTSNQRLAGI 456

Query: 563 WSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-IS 619
                E +     + Q +            L  ++E    ++ Q     + E+ A L   
Sbjct: 457 KKEIEELSKEQQVLDQQWHTEKETLDAVTELKEEEERTRLRMNQAERANDLERAAQLKYG 516

Query: 620 ILHEVHIQIHQI-----------------ESQEAMI 638
            L E+  ++  +                 +  EA I
Sbjct: 517 RLEEIQRELEALEVSQQALQEKGLTMLREQVTEADI 552


>gi|114681591|ref|XP_001160879.1| PREDICTED: myosin, heavy polypeptide 7B, cardiac muscle, beta isoform
            6 [Pan troglodytes]
          Length = 1932

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 86/279 (30%), Gaps = 13/279 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
              +  +  +   L   D        N        +A L+   +     ++ +K       
Sbjct: 1562 ELSQVKAEVDRKLAEKDEECANLRRNHQRAVESLQASLDAETRARNEALRLKKKMEGDLN 1621

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS---LR 483
             +  +L    ++     +       +    +  +   QRL      + +  ++ +     
Sbjct: 1622 DLELQLGHATRQATEAQAATRLMQAQLKEEQAGRDEEQRLAAELHEQAQALERRASLLAA 1681

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E   L   +      +   ++  ++      L  L S       ++K    +    +L  
Sbjct: 1682 ELEELRAALEQGERSRRLAEQ--ELLEATERLNLLHSQNTGLLNQKKKLEAD--LAQLSG 1737

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   ++ + + +     +        ++++    +  L +  + L +   E++ ++ 
Sbjct: 1738 EVEEAAQERREAEEKAKKAITDAA-MMAEELKKEQDTSAHLERMKKTLEQTVRELQARLE 1796

Query: 604  QVTAK---GEAEKTAILISILHEVHIQI--HQIESQEAM 637
            +       G  ++   L + + E+  ++   Q +  EA+
Sbjct: 1797 EAEQAALRGGKKQVQKLEAKVRELEAELDAEQKKHAEAL 1835


>gi|109491031|ref|XP_001078857.1| PREDICTED: myosin, heavy chain 13, skeletal muscle [Rattus
            norvegicus]
          Length = 1943

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/273 (10%), Positives = 87/273 (31%), Gaps = 17/273 (6%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       + +  +E         I+ +       + +  
Sbjct: 1570 VQLELSQVKSELDRKVTEKDEEIEQIKRNSQRAVEAMQSVLDAEIRSRNDALRLKKKMEG 1629

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       K     + Q   SQ  +  +           L+E   L  
Sbjct: 1630 DLNEMEIQLSHANRQVAETQKHLRTVQGQLKDSQLHLDDAQ-----RSNEDLKEQ--LAI 1682

Query: 491  LINHPAILQEQYQELADIRYDNNELQKL-WSFLFS-----DFVEQKYFLPEEIHQRLCER 544
            +     +LQE+ +E+          ++L    L         +  +        ++L E 
Sbjct: 1683 VERRNGLLQEELEEMKVALEQTERTRRLSEQELLDSSDRVQLLHSQNTSLINTKKKL-EA 1741

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               +   +++  ++++       +  I D     ++          L R K+ +E+ +  
Sbjct: 1742 DLAQCQAEVENSIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKD 1801

Query: 605  VTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
            +  + +  +   L      + ++  ++ ++ES+
Sbjct: 1802 LQHRLDEAEQLALKGGKKQIQKLEARVRELESE 1834


>gi|110678902|ref|YP_681909.1| hypothetical protein RD1_1596 [Roseobacter denitrificans OCh 114]
 gi|109455018|gb|ABG31223.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 863

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 72/203 (35%), Gaps = 9/203 (4%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           ++ F           R    +  +        R +     +    +  +LR   ++ TL 
Sbjct: 407 RRFFDPVAAAVIEARRDLLWSRANGPTIAQVMRAVSYEPQELFRKETDALRLRQVIRTLE 466

Query: 493 NHPA--ILQEQYQELADIRYDNNELQKLWSFL-FSDFVEQKYFLPEEIHQRLCERGFGEL 549
            H    I  E+ QELAD  +   +L  +      +D  E+     E +++ +      E 
Sbjct: 467 LHAKYGITDEKQQELADDMW---DLALILEEGDLADAAERMRRAQERLNEAIKNGASDEE 523

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK---QIAQVT 606
           + +L +++R A        +      Q  QQ      +   +   ++++++   +I ++ 
Sbjct: 524 IAELMQELRRATEDYLQQLSRQAQRDQQEQQPGQQGDQQNSMQMTQDDLQRMMDRIQELM 583

Query: 607 AKGEAEKTAILISILHEVHIQIH 629
            +G   +    +  L E+   + 
Sbjct: 584 EQGRMAEAQQALQELQEMMENMR 606


>gi|302498499|ref|XP_003011247.1| hypothetical protein ARB_02529 [Arthroderma benhamiae CBS 112371]
 gi|291174796|gb|EFE30607.1| hypothetical protein ARB_02529 [Arthroderma benhamiae CBS 112371]
          Length = 1431

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 84/236 (35%), Gaps = 28/236 (11%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + +   L+          +   +   +    +     +QR ++    + K S     REA
Sbjct: 938  RELETELKTTKDAIPKVETAIQKLQLEIDSAKRNLADTQRRVKELSEEHKPSAADEKREA 997

Query: 486  ALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFV---EQKYFLPEEIHQR- 540
            +L  T+      L+++ ++L +++     E+Q L   +          +    + + ++ 
Sbjct: 998  SLEKTI----KALEKEIEKLRSEMTGVEEEIQALQDKIMEVGGVRLRGQKAKVDGLKEQI 1053

Query: 541  --LCERGFGELLKQLDRQVRDAGLWSATTEAN------IVDVRQGYQQALALYKRFRLLS 592
              L +      + +   +        +  +A         D+ +  ++A    K    + 
Sbjct: 1054 SLLTDEVSNAEVSKSKNEKLRVKHEKSRADAEAELESVQEDIERLNEEAKNQAKAVSGIK 1113

Query: 593  RQKEEIEKQIA---------QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++ EE E+ +          +    G+  +     ++  E+  ++   ESQ+A++E
Sbjct: 1114 QKTEEAEEALQTKQEELTALKTELDGKTAELNETRAVEIEMRNKLE--ESQKALVE 1167


>gi|256079882|ref|XP_002576213.1| hypothetical protein [Schistosoma mansoni]
 gi|238661476|emb|CAZ32449.1| expressed protein [Schistosoma mansoni]
          Length = 738

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 78/257 (30%), Gaps = 9/257 (3%)

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
                +         +     +   +   + I+    +    Q   + +Q+L      E 
Sbjct: 99  QCLHEKLTQDYEQLIETLKTSKESQRQLKSEIQLANEQVNKLQTEANDVQRLKTALEQER 158

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
                  K+  + R++    Q  + S        +            L  +  I  +   
Sbjct: 159 GSLKGEVKQIVQFREENARLQSELNSLNAILTRERHEKTN------ILERNREIRHQLQD 212

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI--HQRLCERGFGELLKQLDRQVRDAG 561
               +    NELQK +  L      +   L   +     L  +   E    L +      
Sbjct: 213 SEHRVEQLTNELQK-YQKLEQALHNEMESLKTRLQMLTELNLKYEKENKSLLSQLQSLLN 271

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                  + + +      Q   L +R   + RQK+++E+++ +    G + K+ +   +L
Sbjct: 272 QNQEILASTLKNCENHVSQEGVLRERLLSMHRQKQQLEEKVMEQYRNGSSSKSDLTNQLL 331

Query: 622 HEVHIQIHQIESQEAMI 638
            E   ++  I+   A +
Sbjct: 332 LESQRRLTLIQRARAAL 348


>gi|148664796|gb|EDK97212.1| mCG126176 [Mus musculus]
          Length = 662

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 44/425 (10%), Positives = 107/425 (25%), Gaps = 23/425 (5%)

Query: 224 TLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV 283
                 +   +N  E   F +   L  ++     L+      +  N       +   + +
Sbjct: 137 LHVLTTNNTAINFYENRDFRQHHYLPYYYSIRGVLKDGFTYVLYINGGHPPWTILYPLLL 196

Query: 284 LSLCQAGVQNVVSSLGTALTE---YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340
             + +     +   L               + +     + F+      R          C
Sbjct: 197 EGIRRRLYDFLARGLEKLWPPLGDTLCGTCFPVCLTFAVLFEELVATCRPISLPQLQARC 256

Query: 341 HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE 400
           +   G     V+  R   P                  +    +      ++  +      
Sbjct: 257 YAGSGAEYILVINRRTILPVESWHAPHSDHTGSW---AKDRYEPQTDIPSDIETEQDRVF 313

Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIR-DRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
             +          HIK    + Y +       L ++           G            
Sbjct: 314 FIKAIAQFMATKAHIKLNTKKLYQADGYAVKELLKITSVLYNAMKTKGMEGSNVGEEDIS 373

Query: 460 KGPSQ--RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
           K        +       +L+ + + + A+L   L     + + + + +A     N   + 
Sbjct: 374 KFKFDLGSKIADLKAARQLASEITAKGASLYDLLGKEVELRELRTEAIARPLEINETEKV 433

Query: 518 LWSFLFSDFV---------EQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSAT 566
           +   +                       +  ++ +R        K+L         +   
Sbjct: 434 MRIAIKDLLAQVQKTKDLLNNVASDEANLEAKIEKRKLELERNRKRLQTLQSVRPAFMDE 493

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS-ILHEVH 625
            E    D+++ Y   L  ++    L +Q E+  +   +     EAE T  L+   L E  
Sbjct: 494 YEKVEEDLQKQYDVYLEKFRNLAYLEQQLEDHHRM--EQERFEEAENTLRLMQNKLKEEE 551

Query: 626 IQIHQ 630
            ++ +
Sbjct: 552 KRLLK 556


>gi|169851313|ref|XP_001832347.1| hypothetical protein CC1G_07734 [Coprinopsis cinerea okayama7#130]
 gi|116506613|gb|EAU89508.1| hypothetical protein CC1G_07734 [Coprinopsis cinerea okayama7#130]
          Length = 810

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/220 (9%), Positives = 63/220 (28%), Gaps = 23/220 (10%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           +                   R   + A     +   Q+         + +   + +   L
Sbjct: 545 LAQMQNNDNALSEELTKEIERLSSRVAELEQVEHQLQQATGMLQASKRENSNLTSQIREL 604

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
                N+ + +++    + +      E  +L + L                     R   
Sbjct: 605 RSAEANYRSEIEDARHAMEEFE---RENGELKTRLADMTKVMSEPDTAN-----SARELR 656

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            LL+ + R+ +         E +   +    +       +   L R+  E++ ++ ++  
Sbjct: 657 VLLRDITRENQGLKERVRAAERSREQLLLSSRDT----TQIEDLQRKNRELQMEVQELEQ 712

Query: 608 KGEAEKTAILISILHEV-----------HIQIHQIESQEA 636
                +++   + L +V            ++I +++ + A
Sbjct: 713 LTAQLQSSQEDNHLQQVLLVVTRENEGMKVRIREMQQERA 752


>gi|112421039|ref|NP_032935.2| periplakin [Mus musculus]
 gi|148664862|gb|EDK97278.1| periplakin [Mus musculus]
          Length = 1754

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 73/212 (34%), Gaps = 16/212 (7%)

Query: 439  YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
               +     +  ++  +    +GP + L++  ++K             L  TL       
Sbjct: 903  RRQQLENEVKSAQEEIQTLKDQGPQESLVRKEVLKKVPDPALEESFQQLQQTLAEEQHKN 962

Query: 499  QEQYQELADIRYDNNELQK----------LWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
            Q   +EL  ++     L++          +   L  +    +     ++ + L      +
Sbjct: 963  QLLQEELGALQLRLQALEQETRDGGQEYVVKEVLRIEPDRAQEDEVLQLREELEALRRQK 1022

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
              ++ +  +    + +   E + V  +   ++ + L +    L  +   ++++  +    
Sbjct: 1023 GAREAEVLLLQQRVAALAAEKSRVQEKVTEREVVKL-QNDPQLEAEYRRLQEEHQREGTL 1081

Query: 609  GEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             E ++  +       +  ++ ++E + AM EG
Sbjct: 1082 REKQEEELSF-----LQAKLRRLEKERAMAEG 1108


>gi|86605073|ref|YP_473836.1| hypothetical protein CYA_0355 [Synechococcus sp. JA-3-3Ab]
 gi|86553615|gb|ABC98573.1| hypothetical protein CYA_0355 [Synechococcus sp. JA-3-3Ab]
          Length = 549

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 71/207 (34%), Gaps = 10/207 (4%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + +   L +     + +     R  ++    + Q    ++ +Q+   +    ++    E
Sbjct: 14  VRNLERSLAESEALSLQQIECTHRLEQQLLEAQAQLQEREQALQACQEEKARLEQRPTLE 73

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKL-WSFLFSDFVEQKYFLPEEIHQRLCE 543
           A           + Q+  +EL ++ ++      L    +    ++      E +   L  
Sbjct: 74  AF---------QLQQQHIEELQNLLWEMERRPTLEHYQILQQQLQTSQAEIETLKAELQR 124

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           R       QL +++ +    +       V + Q          R + L  +K +++ QI 
Sbjct: 125 RVDPARFYQLQQELWELKQQANQLGEYAVKLPQVQLLQAQSQLRIQALEEEKAQLQAQIQ 184

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQ 630
           ++ A+  A++   L + L   H Q   
Sbjct: 185 ELAARPSAQEMEALRAELEAAHRQAEA 211


>gi|42518097|ref|NP_964027.1| replicative DNA helicase [Lactobacillus johnsonii NCC 533]
 gi|41582381|gb|AAS07993.1| replicative DNA helicase [Lactobacillus johnsonii NCC 533]
          Length = 457

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 10/144 (6%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +     S  E A+L  +   P  + +    L    +  +  + ++  + +    ++   
Sbjct: 6   SQQIPHDSEAEKAVLGAVFLDPEAIIDASDVLQPDDFYEHANRIVFQAMLNISDREEVID 65

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  +   L +            QV D G  +  TE ++      +    A   + + + R
Sbjct: 66  PVTLQDELKKN----------NQVDDIGGIAYVTELSMATPTAAHVTYYAKIVKRKAILR 115

Query: 594 QKEEIEKQIAQVTAKGEAEKTAIL 617
                 ++I Q   +G  + T IL
Sbjct: 116 NLISTSQRIIQNAIEGSDDVTDIL 139


>gi|66806323|ref|XP_636884.1| hypothetical protein DDB_G0288073 [Dictyostelium discoideum AX4]
 gi|60465289|gb|EAL63381.1| hypothetical protein DDB_G0288073 [Dictyostelium discoideum AX4]
          Length = 2037

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 80/239 (33%), Gaps = 27/239 (11%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQ---AIRDRLQQLFQKYITEHSGYGRYWKKNA 454
             ++   +        N     +L+  Y++    + +RL+    +             K  
Sbjct: 1044 QEKDNIVHYKSIAISNENDLSQLKEEYTKTKVELEERLKDAQAELAKSQETIKEQQIKLE 1103

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  +     Q+ + S + +        L E   L   I    + ++Q   L + +  +  
Sbjct: 1104 KLENFSSSHQKDINSIIAEKDSI----LAEKQQLYEKIQ--QLTKDQQLALDEAKLQHQL 1157

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             +K            + +  E +      +   +L   L    +         ++N  ++
Sbjct: 1158 CRK----------ATENYEREVVLHAEDIKVLPKLRDDLVEARKTINQMQIKIDSNSQEL 1207

Query: 575  RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             Q  Q  +   ++ +LL +Q +E+E+++  +           L S +  ++ Q  QI+ 
Sbjct: 1208 EQAKQSWI---QQEQLLKQQIQELEERLKDLKHHNNL-----LHSQIENINQQTQQIDR 1258



 Score = 37.9 bits (86), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 52/143 (36%), Gaps = 10/143 (6%)

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
           P +     + L+D         +L   L              ++++  +R   + L  + 
Sbjct: 373 PILSDTVKERLSDAT-TLGSRDELRRELLDMIQRYDDLTKIALNEKKEKRYVQDHLSHIL 431

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           R+V                + +  ++ L  Y++   L  QKE +  ++  ++++      
Sbjct: 432 REVEKKAPLIHEQNREYQRLLKSQEKLLNSYQQ---LQSQKETLSLKVTTISSENNK--- 485

Query: 615 AILISILHEVHIQIHQIESQEAM 637
             L   ++++  QI  +  QEA+
Sbjct: 486 --LKQEINDLQKQIRCL-LQEAL 505


>gi|322375292|ref|ZP_08049805.1| ABC transporter, ATP-binding protein [Streptococcus sp. C300]
 gi|321279555|gb|EFX56595.1| ABC transporter, ATP-binding protein [Streptococcus sp. C300]
          Length = 633

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 57/160 (35%), Gaps = 19/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSESGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E   Q +           +   +    ++  ++A  L ++   L  + EE+E Q  
Sbjct: 532 KAEVEA-SQTEEVSTSNQAKEGSPANDYQAQKESQKEARKLMRQIENLEAEIEELESQSQ 590

Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               Q+    +AEK   L + + ++  +      +EAM+E
Sbjct: 591 AISEQMLETNDAEKLMELQAEMDKISHR-----QEEAMLE 625


>gi|308482367|ref|XP_003103387.1| hypothetical protein CRE_27583 [Caenorhabditis remanei]
 gi|308260177|gb|EFP04130.1| hypothetical protein CRE_27583 [Caenorhabditis remanei]
          Length = 466

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
               E+ +++        + +   +    ++++  +++  L K+ + L ++ +E ++++A
Sbjct: 277 AELKEMRQKVMELETQNHVCTNQLKRQDDEMKRVREESEQLVKKRKELEQELKEQKEKMA 336

Query: 604 QVTAK------GEAEKTAILISILHEVHIQIHQIESQEA 636
              ++       +  K +  I  + E+   I Q+E ++A
Sbjct: 337 DKESEVSEQRINDRLKYSEAIQTIQELRSSISQLELKKA 375


>gi|296232742|ref|XP_002807835.1| PREDICTED: LOW QUALITY PROTEIN: EVI5-like protein-like [Callithrix
           jacchus]
          Length = 677

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 88/268 (32%), Gaps = 16/268 (5%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS---QAIRDRLQQLF 436
           P +   +    E     +     E    L+   + + D + R         +    ++L 
Sbjct: 333 PRLTEDFVSHLETELEQSRLRETETLGALREMQDKVLDMEKRNSSLPDENNVAQLQEELK 392

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE--AALLLTLINH 494
              + E        +   + ++     Q  +       +  +K  L E    L+   +  
Sbjct: 393 ALKVREGQAVASTRELKLQLQELSDTWQAHLARGGRWKESPRKLVLGELQDELMSVRLRE 452

Query: 495 PAILQEQYQELADI-RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-RLCERGFGELLKQ 552
              L E  +    +   +  +   +   L +    ++  L E++       +G    L +
Sbjct: 453 AQALAEGRELRQRVVELETQDH--IHRNLLNRVEAERAALQEKLQYLAAQNKGLQTQLSE 510

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
             R+  +A   S   E   V +R+    A     R R+   + +  E +I       ++ 
Sbjct: 511 SRRKQAEAECKS-KEEVMAVRLREADSMAAVAEMRQRIAELEIQREEGRIQGQLNHSDSS 569

Query: 613 KTAILISILHEVHIQIHQIESQEAMIEG 640
           +       + E+  QI +++++  +++G
Sbjct: 570 QY------IRELKDQIEELKAEVRLLKG 591


>gi|289615285|emb|CBI58052.1| putative SMC4/CSM1 protein [Sordaria macrospora]
          Length = 1644

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 77/212 (36%), Gaps = 5/212 (2%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             ++    +      +   R  K+ ++ +         + +   +    +    +    + 
Sbjct: 1036 QKINLEVESSERNLADAQRRIKELSKEQQPSKIDDNRVAALEKEIAKLEGEVEKLREEMS 1095

Query: 490  TLINHPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
            ++      LQ++  ++   +  + +    +L + +     + +     E+     E+   
Sbjct: 1096 SVEEEIKALQDKIMKVGGEKLRSQKAAVDQLKTEIVE---QNEQTSAAEVKMAKAEKQKH 1152

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            +L K  ++  ++       TEA   +++     A +L  R        +E +K++A +  
Sbjct: 1153 KLEKDFNKASKELQNAIQETEALEEEIQNQGNTAESLTTRVEEAQEALKEKKKELAAMKK 1212

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            + + +   +  +   E+ ++    E+Q+ + E
Sbjct: 1213 ELDEKTAELNETRAVEIEMRNKLEENQKILSE 1244


>gi|327264265|ref|XP_003216935.1| PREDICTED: NF-kappa-B essential modulator-like [Anolis
           carolinensis]
          Length = 516

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 69/219 (31%), Gaps = 11/219 (5%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R      +   L +L +      +      +   R R       +  + +  + K     
Sbjct: 242 RASVKAQVTSLLGELLESQTRLETSTKEKKELEERIRGTAEQLHQFEREADARTKQHSVQ 301

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             +    L   + +        ++ A       +L +L       F E    +   +   
Sbjct: 302 VDQ----LRLQVQNLESALRVERQSASEE--KRKLAQLQVAYHELFREYDSHIKTSLESE 355

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
              +G    + +L +Q+++A       +  I  +++  +Q  A+ +   +L       + 
Sbjct: 356 KRSKGLDLQVAELSQQLQEAEEALVAKQELIDKLKEEAEQHKAIMETVPVLK-----AQA 410

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            I +     E +    L      +  Q+ Q++   A++E
Sbjct: 411 DIYKTDFLAERQAREKLHEQREALLEQLAQLQRDRALME 449


>gi|297247111|ref|ZP_06930829.1| ATP-dependent chaperone ClpB [Brucella abortus bv. 5 str. B3196]
 gi|297174280|gb|EFH33627.1| ATP-dependent chaperone ClpB [Brucella abortus bv. 5 str. B3196]
          Length = 931

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 79/211 (37%), Gaps = 32/211 (15%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++KY+ + +   R ++           +  +++    K +   K  + ++AL+     
Sbjct: 375 EEYRKYVEKDAALARRFQPVFVDEPTAEDTISILRGLKEKYEQHHKVRVSDSALVAAATL 434

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +    +L   + S                       E+ +++
Sbjct: 435 SNRYITDRFLPDKAIDLVDEAASRLRMQVDS-----------------KPEELDEIDRRI 477

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            +   +       T+A   D             R + + ++  ++E++ A++TAK +AEK
Sbjct: 478 MQLKIEREALKVETDAASKD-------------RLQRIEKELSDLEEESAELTAKWQAEK 524

Query: 614 TAILISILHEVHIQIHQIESQEAMIEGFGKM 644
             + ++   ++  Q+ +  +  A+ +  G+ 
Sbjct: 525 QKLGLAA--DLKRQLEEARNALAIAQRNGEF 553


>gi|218659071|ref|ZP_03515001.1| hypothetical protein RetlI_05101 [Rhizobium etli IE4771]
          Length = 300

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 19/45 (42%)

Query: 69  VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI 113
            KGD    +  L    F ++V+++AA+ G  +   + +       
Sbjct: 78  AKGDVFGLVEHLDRAGFFKAVEKVAALVGFEISAPEWQSRSPADK 122


>gi|260836150|ref|XP_002613069.1| hypothetical protein BRAFLDRAFT_125693 [Branchiostoma floridae]
 gi|229298453|gb|EEN69078.1| hypothetical protein BRAFLDRAFT_125693 [Branchiostoma floridae]
          Length = 1348

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/285 (11%), Positives = 91/285 (31%), Gaps = 17/285 (5%)

Query: 369  TAFEKLIVESLPLVDMLWKR--ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
               E LI     +   +       +          A          N  KD +      Q
Sbjct: 895  DRAENLIKNKADMEQKIIDYKELLQEEESKNSQLGAAKRKVEGEVDNLKKDLEEMEKTLQ 954

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             +    + +  +  T          + A+   +K   ++L  ++L   +  +      + 
Sbjct: 955  KVEKETRGVENRVRTTSEELAAQEDQIAKLSKEKAKLEQLNATTLEDLQKEEDKVNNLSK 1014

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF------LPEEIHQR 540
            L   L  +   L +  + L   +    E ++L   L  D    +           ++ +R
Sbjct: 1015 LKAKLEQN---LDDLEENLDREKKARAEAERLKRKLEGDLKAAQETLGGLENEKADLEER 1071

Query: 541  LCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            + ++ F    L  +L+ +           +     + +  Q+  A       + +Q+ ++
Sbjct: 1072 IKKKEFEIKGLEAKLEDEQGLVTSLQKKIKELQGRIEELEQELEAERNARAKVDKQRADL 1131

Query: 599  EKQIA----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             +++     ++   G A      ++   E+ +Q  + E +E+ ++
Sbjct: 1132 ARELEDLGDRLEEAGGATAAQAEVNKKREIELQKLRRELEESNMQ 1176



 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 99/344 (28%), Gaps = 31/344 (9%)

Query: 287  CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346
             +       +             L       + C          A + +      L    
Sbjct: 793  YERLKDQRAALKMLQRNVRNWMTLRNWDWWKLFCTIKPLLSQSRADEELRNKEEELTELK 852

Query: 347  RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406
                   +   D    +    +    K  + +    +     +  +R+ N    +A++E 
Sbjct: 853  EDMEKEETTMADIQQKLTVVEQE---KNELAAQLSAEQTNTGDIADRAENLIKNKADMEQ 909

Query: 407  HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             + +    +++++ +     A + +++        +     +  +K  +         R 
Sbjct: 910  KIIDYKELLQEEESKNSQLGAAKRKVEGEVDNLKKDLEEMEKTLQKVEKETRGVENRVRT 969

Query: 467  MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
                L   +       +E A              + ++L        +LQK         
Sbjct: 970  TSEELAAQEDQIAKLSKEKA--------------KLEQLNATTL--EDLQK--------- 1004

Query: 527  VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             E K     ++  +L E+   +L + LDR+ +              D++   +    L  
Sbjct: 1005 EEDKVNNLSKLKAKL-EQNLDDLEENLDREKKARAEAERLKRKLEGDLKAAQETLGGLEN 1063

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQI 628
                L  + ++ E +I  + AK E E+     L   + E+  +I
Sbjct: 1064 EKADLEERIKKKEFEIKGLEAKLEDEQGLVTSLQKKIKELQGRI 1107


>gi|194383550|dbj|BAG64746.1| unnamed protein product [Homo sapiens]
          Length = 640

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 78/269 (28%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK----LRYYYSQAIRDRLQ 433
           +      + K   +            LE         ++DQ     L+    Q +++RL 
Sbjct: 205 AKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTLQERLH 264

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 265 EADATLKREQESYKQMQSEFA---------ARLNKVEMERQNLAEAITLAER-------K 308

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    +   +    ++     L+     L     +        E++   L E    E L 
Sbjct: 309 YSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLD 368

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 369 SSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHD 428

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   IE
Sbjct: 429 QIAGQKASK--QELETELERLKQEFHYIE 455


>gi|187466198|emb|CAQ52075.1| benzodiazapine receptor associated protein 1 [Mus musculus]
          Length = 1846

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 93/256 (36%), Gaps = 32/256 (12%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP---SQRLMQSSLV 472
           ++Q LR        +++++L +K         R  ++  + ++       +      S +
Sbjct: 141 ENQMLRKSSFPETEEKVRRLKRKNAELAVIAKRLEERAQKLQETNMRVVSAPVPRPGSSL 200

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           +         R   L  T     + L  + +++A ++    E ++L + L     E   +
Sbjct: 201 ELCRKALARQRARDLSETA----SALLAKDKQIAALQ---RECRELQARLSLVGKEGPQW 253

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVR------------------DAGLWSATTEANIVDV 574
           L      RL      E+L +L RQ+                    + + +    A    V
Sbjct: 254 LHMRDFDRLLRESQREVL-RLQRQIALRNQREPLRPARSPGPTAPSRVGAPAPGAPGEAV 312

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            Q   ++  +  R     ++ +++E ++   +   +   ++         E+ +Q+   +
Sbjct: 313 LQDDVESPQVVLREPEKQQRVQQLESELCKKRKKCESLEQEARKKQRRCEELELQLRAAQ 372

Query: 633 SQEA-MIEGFGKMSGR 647
           ++ A ++E   ++SGR
Sbjct: 373 NENARLVEENSRLSGR 388


>gi|146179302|ref|XP_001020566.2| Kinesin motor domain containing protein [Tetrahymena thermophila]
 gi|146144562|gb|EAS00321.2| Kinesin motor domain containing protein [Tetrahymena thermophila
           SB210]
          Length = 1125

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 57/141 (40%), Gaps = 9/141 (6%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +  E  ++   + +   E+++L + +       +Q     +     + E+GF E+ ++ 
Sbjct: 558 KLENENQEQREALVFAKAEIERLKTEMLKYDILEQQHRIDIDNKKIEM-EKGFFEITREK 616

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
             +                D R  ++ Q + L  + +L SR+ +E+E+++ ++    +  
Sbjct: 617 QNEFNKLTQEVEGNLIKNKDERLLWESQKMELTHKNKLQSRKIQELEERLNELMKFNDEM 676

Query: 613 KTAILISILHEVHIQIHQIES 633
                     ++ +Q+ ++ S
Sbjct: 677 TAENG-----KLQLQLDEMRS 692


>gi|114600696|ref|XP_001151560.1| PREDICTED: retinoic acid induced 14 isoform 4 [Pan troglodytes]
          Length = 1002

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 101/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 616 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 673

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 674 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLIQLTNVSRAKAEDALSEMKSQYSKVLN 733

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 734 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 792

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 793 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 852

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 853 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 890


>gi|29466|emb|CAA35941.1| fetal-myosin heavy chain (1437 AA) [Homo sapiens]
          Length = 1437

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1064 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHTRVVETMQSTLDAEIRSRNDALRVKKKMEG 1123

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1124 DLNEM-EIQLNHANRLAAESLRNYRNTQGILKETQLHLDDALRGQEDLKEQ------LAI 1176

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1177 VERRANLLQAEIEELWATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1236

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1237 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1296

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1297 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1328


>gi|86610360|ref|YP_479122.1| chromosome segregation protein SMC [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558902|gb|ABD03859.1| putative chromosome segregation protein SMC [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 1188

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 19/143 (13%)

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
             +++A  + +  + Q+L         +Q++   E  H    +    +    L  QV+ A
Sbjct: 326 VSRQIAAWQEEIQQAQRLHQ---ECQAQQQHLQAELEHLHSQQEQLAQAQGSLQAQVQKA 382

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            +     E +   +R   Q A A  K+ R L+R  EE+  +          E        
Sbjct: 383 QISL---EQSREQLRALAQSADAWVKQQRYLTRHIEELRAE---------QEPLQQEQIR 430

Query: 621 LHEVHIQIHQ----IESQEAMIE 639
           L E   Q+ +    I+++ A IE
Sbjct: 431 LQERQRQLERQSQEIQAEIAQIE 453



 Score = 38.3 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 78/219 (35%), Gaps = 17/219 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            Q + D LQQ         S      ++   H   +  +    +  + +   + +  +++
Sbjct: 280 VQTLNDHLQQAEAALGELQSRIHALGEEEYLHLQAQIAAAEAQRQQVSRQIAAWQEEIQQ 339

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           A  L     H     +Q    A++ + +++ ++L          Q      +I       
Sbjct: 340 AQRL-----HQECQAQQQHLQAELEHLHSQQEQLAQA---QGSLQAQVQKAQISLEQSRE 391

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               L +  D  V+     +   E    +     Q+ + L +R R L RQ +EI+ +IAQ
Sbjct: 392 QLRALAQSADAWVKQQRYLTRHIEELRAEQEPLQQEQIRLQERQRQLERQSQEIQAEIAQ 451

Query: 605 VTA--------KGEAEKT-AILISILHEVHIQIHQIESQ 634
           + A          E E T     + +  +  ++ Q+++ 
Sbjct: 452 IEAWLGSHLALTAELEHTCRQSEAQVQTLAQELAQLQAS 490


>gi|74814257|sp|Q8I145|CCD22_DROWI RecName: Full=Coiled-coil domain-containing protein 22 homolog
 gi|27374389|gb|AAO01126.1| CG9951-PA [Drosophila willistoni]
          Length = 570

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/284 (9%), Positives = 86/284 (30%), Gaps = 15/284 (5%)

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
              ++L  ++  +++      ++       +  A  E       + +K  +         
Sbjct: 283 QEVQELRTQTEIMLNHRKMVTSKLNELKIRETTASQEKETIE--SKLKSHEKLSLVLSEP 340

Query: 429 RD---RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            +   +L+ L +    +     + W+   R       + R  Q +     +       E 
Sbjct: 341 EENVGKLEALVEATENKRQTLNQQWQDYRRPLLDTLSTLRNAQEAQQVQIIRNSIEKLEQ 400

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            ++     H  +          +       +++  F+ +   +++         R  ++ 
Sbjct: 401 EIIAKSQQHNELNSSLKNATQSVAPRQEYTRRIHEFIKNIRKQREDIFKVLDDTRQLQKQ 460

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL----------SRQK 595
              +  QL RQ          +  + +  ++ Y+    L+     L          +++ 
Sbjct: 461 LNVVNAQLQRQFNYTDDLLFQSAKHDLHAKKAYKLLAQLHSNCSELVECVSLTGNVTKEI 520

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++E QI     K    +   +   +      I ++++Q   +E
Sbjct: 521 RDLEVQIDGEKLKNVLSRLQQITGDIQRSEQHIQELQTQIRQVE 564


>gi|325578209|ref|ZP_08148344.1| peptide chain release factor RF2 [Haemophilus parainfluenzae ATCC
           33392]
 gi|325159945|gb|EGC72074.1| peptide chain release factor RF2 [Haemophilus parainfluenzae ATCC
           33392]
          Length = 364

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 548 ELLKQLDRQVRDAGLWSATTEA-NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
           E L++++ ++    +W+   +A  +   R   +Q +   K    L +  E++E  +    
Sbjct: 31  ERLEEVNAELEQPDVWNDPEKAQALGKERVSLEQVVDTIKN---LEQGLEDVEGLLELAV 87

Query: 607 AKGEAEKTAILISILHEVHIQIHQIE 632
              + E     ++ L E+  Q+ ++E
Sbjct: 88  EAEDEETFNEAVAELDELEQQLAKLE 113


>gi|301754251|ref|XP_002912946.1| PREDICTED: kinesin-like protein KIF3A-like [Ailuropoda melanoleuca]
          Length = 726

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/313 (8%), Positives = 87/313 (27%), Gaps = 16/313 (5%)

Query: 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
           + + ++C +              L   +     +    +    +D             +K
Sbjct: 313 NSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEELKK 372

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + E   +         E+            +   +   +            +   D+  
Sbjct: 373 KLEEGEEISGSDISGSEEDDDEEGEVGEDGEKRKKRRGSSSSSSSDSTCSVIEKPLDK-S 431

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
              Q    + S       +     ++K    +L      + K   +   RE  LL     
Sbjct: 432 LPNQAGKKKVSPDKMVEMQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQE 491

Query: 494 HPAILQEQYQELADIRYDNNELQKLW----SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           H ++L    ++L+ +       +K+       L     ++K      +      +   +L
Sbjct: 492 HQSLL----EKLSALE------KKVIVGGVDLLAKAEEQEKLLEESNMELEERRKRAEQL 541

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            ++L+ + ++         +   + +   ++   ++        +  +++++  +   +G
Sbjct: 542 RRELEEKEQERLDIEEKYTSLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQEHQR-EIEG 600

Query: 610 EAEKTAILISILH 622
             E    L   L 
Sbjct: 601 LLENIRQLSRELR 613


>gi|302035504|ref|YP_003795826.1| putative phage tail length tape measure protein [Candidatus
           Nitrospira defluvii]
 gi|300603568|emb|CBK39898.1| putative Phage tail length tape measure protein [Candidatus
           Nitrospira defluvii]
          Length = 901

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/314 (10%), Positives = 85/314 (27%), Gaps = 33/314 (10%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DP+   R     A       +                      +  L          ++D
Sbjct: 345 DPELLQRLTKPKAV----KPAQDTTGAQTTLMKAQLDAEFALLKDGLARQQTALDAALED 400

Query: 418 QKL--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM-------- 467
           + +  R YY+Q      +++  +   +     R  +     + +    +           
Sbjct: 401 RLVSVRDYYTQKTALEQREVDAEIARKQQELARSQQVVTTGKSENDRLKAKAEVAKAEAD 460

Query: 468 ------QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL--- 518
                 + + ++   ++K +  E  L   L       +E+  ++     D +    +   
Sbjct: 461 LITLNNRRTDIEQANARKAAQAERELADALAQ----AREELAQITGTATDTDRQAAIERS 516

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGLWSATTEANIV-DVRQ 576
           +  L +    +       +  RL      +  L  L+ Q R         +  I    + 
Sbjct: 517 YRDLRARLAAESDADGVSLIDRLINVKAAQANLAALEAQWRQVTERLRNAQEAIQTQQQA 576

Query: 577 GYQQALALYKRFRLLSRQ----KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           G        ++   L +Q     E +   + Q       +    + +  +E+      ++
Sbjct: 577 GLLTEAQARQQIVALQQQSATEMERLLPTMQQAAQAIGPDAVIRVQAWRNELDRTKLTVD 636

Query: 633 SQEAMIEGFGKMSG 646
               +    G+  G
Sbjct: 637 EMAPLWNRIGESFG 650


>gi|270010858|gb|EFA07306.1| hypothetical protein TcasGA2_TC015896 [Tribolium castaneum]
          Length = 715

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 61/222 (27%), Gaps = 7/222 (3%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
                IKD  LR   +Q +        +             +K      ++         
Sbjct: 446 PVAQEIKD--LREARAQRLAKIYASDDKTTDEVEKSLKEKKRKEEARLAEERAIAEEQAK 503

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              +     + + +E           A L+ Q ++            +       +    
Sbjct: 504 KEAEAARKAEIARQEQLAAQLAAERAAELERQAEQARQEELAKQAEIE--RMKREEEERA 561

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +      + +        + L +L+   R A        A   +      +  A      
Sbjct: 562 RLEEQRRLEEEAKAEEERQQLLRLEEIARQAEEEKERELARQAEELAELARQEAERAEQE 621

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            L R+++E E++ A++    E  +    ++ L     ++ ++
Sbjct: 622 RLEREQKEKEQKEAEL---AELARQETELAELERQEKELAEL 660


>gi|255021567|ref|ZP_05293610.1| Chromosome partition protein smc [Acidithiobacillus caldus ATCC
           51756]
 gi|254968955|gb|EET26474.1| Chromosome partition protein smc [Acidithiobacillus caldus ATCC
           51756]
          Length = 1154

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 87/249 (34%), Gaps = 20/249 (8%)

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           +      +++ +     + ++  L  L Q+         R  +   + +  +   +  + 
Sbjct: 648 RELELVQREESVATTALEDLQRELVTLEQRVAARLQERQRCVQAERKGQQAELALRERLA 707

Query: 469 SSLVKGKLSKKPSL-REAALLLT------LINHPAILQEQYQELADIRYDNNELQKLWSF 521
           S   + +  ++     EA L         L    A + EQ ++L       +  Q+L   
Sbjct: 708 SLRSRVQAEQEAQRQAEANLARLRSERTTLSAELAAVDEQLEQLRRNAPTEDGEQRLRRE 767

Query: 522 --LFSDFVEQKYFLPEEIHQR-----LCERGFGELLKQLDRQVRDAGLWSATTEANI--- 571
                    Q+  L   + Q+     L +   G     ++ ++R+     A  +  +   
Sbjct: 768 EDALRARQAQQRSLLGRLRQQQQALALEKERLGAQRAAVEERLREWEAEEAELQRTLAHL 827

Query: 572 -VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA-EKTAILIS-ILHEVHIQI 628
             D+ +  ++   L +R  LL + + E  K++    A+ +A E++  L    +      +
Sbjct: 828 TEDLEKRQKKLPPLKERLALLEQGRAENRKRVQAAQAELDAVEESWRLSQSEIQRRDNAL 887

Query: 629 HQIESQEAM 637
            ++E   A 
Sbjct: 888 RRLEQGLAA 896


>gi|194218939|ref|XP_001493911.2| PREDICTED: CAP-GLY domain containing linker protein 2 [Equus
           caballus]
          Length = 1128

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 79/281 (28%), Gaps = 14/281 (4%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +  I         +L    +  ++     E         +        +      ++ ++
Sbjct: 332 EESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEE 391

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                   I +    L                   R R      +   +S +++ K  K 
Sbjct: 392 ELSLRRGEIEELQHCLLHSGPPPPDHPEAAETLRLRERLLSASKEHQRESGMLRDKYEKA 451

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEE 536
               +A +      +    QE     A ++   +E   L                   E+
Sbjct: 452 LRAYQAEVEKLRAANEKYAQEVVDLKAKVQQATSENMGLMDNWKSKLDSLASDHQKSLED 511

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQK 595
           +   L   G G   K++              +  + ++R  +    A++ + +  L ++ 
Sbjct: 512 LKATLNS-GPGAQQKEIGELKAVMEGIKMEHQLELGNLRAKHDIETAMHVKEKEGLRQKL 570

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           +E ++++A +                 EV    H++E QEA
Sbjct: 571 QEAQEELAGL---------RQHWQAQLEVQASQHRLELQEA 602


>gi|126334578|ref|XP_001369869.1| PREDICTED: similar to superfast myosin heavy chain [Monodelphis
            domestica]
          Length = 1945

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 40/123 (32%), Gaps = 3/123 (2%)

Query: 514  ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            EL ++ + +     E++            +R    L   L+ + +         +    D
Sbjct: 1558 ELAQVKADIDRRIHEKEEEFEATRKNH--QRAIESLQASLEAEAKGRAEALRLKKKMETD 1615

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-ILISILHEVHIQIHQIE 632
            + +   Q     K    L +  + +++QI  +  + + +      +   + +  +   + 
Sbjct: 1616 LNEMEIQLDHANKNNSELVKTLKRLQQQIKDLQIQMDEDARQHEELREQYNLQERRLSLL 1675

Query: 633  SQE 635
              E
Sbjct: 1676 QTE 1678


>gi|145508253|ref|XP_001440076.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407282|emb|CAK72679.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2189

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 103/288 (35%), Gaps = 21/288 (7%)

Query: 357  EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            +D         +        E L     L ++  E+        ++++    K     I+
Sbjct: 1381 QDISERSSQISQIDLIDREKEELNDQIRLKEKSEESLKQTISTLQSQISKLTKQVQQLIQ 1440

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            D+       Q   DRL  +      +     R  +    ++ QK   + L ++   + + 
Sbjct: 1441 DKME----LQQQIDRLIDIENSIKLKEIEILRLVQIENDYQRQKEKVKTLDKTITDQTQK 1496

Query: 477  SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             K     E     ++ N+   L E+ + +  +     E+ KL   +     +      E+
Sbjct: 1497 IKIYQEYEKQTKESIKNYEQELDEKQETIQHLE---QEIIKLKQQIDDYQRQITKISKEK 1553

Query: 537  --IHQRLCERGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              ++Q++      +   + QL+ Q ++      T    + D++   ++      +F+ + 
Sbjct: 1554 ETVNQKVKSSETNQQKKIDQLEEQKQELLNDLQTLNIRVEDLQSQLKELQERRDQFQKID 1613

Query: 593  RQKEEIEKQIAQVTAKGEAEKTAILISI-LHEVHIQIHQIESQEAMIE 639
            ++KE+I++          ++ +       + E+  +I +++++    E
Sbjct: 1614 KEKEDIKRT---------SDTSERKYKESIKELEKEIQRLKAEMIKKE 1652


>gi|293343534|ref|XP_002725504.1| PREDICTED: Temporarily Assigned Gene name family member
           (tag-241)-like [Rattus norvegicus]
 gi|293355432|ref|XP_002728690.1| PREDICTED: Temporarily Assigned Gene name family member
           (tag-241)-like [Rattus norvegicus]
          Length = 944

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 22/197 (11%)

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPA 496
             + +   +   +      +       + S L KG+    PS REA L   L  +     
Sbjct: 537 RKKMAKIDKEKDRFEHELQKYRSFYGDLDSPLPKGEAGGPPSTREAELKLRLRLVEEEAN 596

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           IL  +  EL        E + L + L     +        +      R   E L +L + 
Sbjct: 597 ILGRKIVELEV------ENRGLKAELDDLRGDDFNGSSNPLM-----REQSESLSELRQH 645

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           ++     +     N+ D+ +  ++  A   +++         +      +   ++ KT  
Sbjct: 646 LQLVEDETELLRRNVADLEEQNKRITAELNKYKY--------KSSGHDSSRHHDSAKTEA 697

Query: 617 LISILHEVHIQIHQIES 633
           L   L    +QI+++  
Sbjct: 698 LQEELKAARLQINELSG 714


>gi|7715577|gb|AAF68100.1|AF255547_1 PspA [Streptococcus pneumoniae]
          Length = 241

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L ++       +  L++++ +  +      A+ 
Sbjct: 83  ELEKLLDNLDPEGKTQDELDKEAAEAELDKKADELQNKVADLEKEISNLEI--LLGGADP 140

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            D     Q  LA   +   L + ++E++  + ++   G+ E+T
Sbjct: 141 EDDTAALQNKLA--TKKAELEKTQKELDAALNELGPDGDEEET 181



 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 54/129 (41%), Gaps = 8/129 (6%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L +        +  L++++ +  +      A+ 
Sbjct: 2   ELEKLLDSLDPEGKTQDELDKEAAEAELNKKVESLQNKVADLEKEISNLEI--LLGGADS 59

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE-AEKTAILISILHEVHIQIHQ 630
            D     Q  LA   +   L++++ E+EK +  +  +G+  ++     +   E+  +  +
Sbjct: 60  EDDTAALQNKLAA--KQAELAKKQTELEKLLDNLDPEGKTQDELDKEAAEA-ELDKKADE 116

Query: 631 IESQEAMIE 639
           ++++ A +E
Sbjct: 117 LQNKVADLE 125


>gi|313242554|emb|CBY34689.1| unnamed protein product [Oikopleura dioica]
          Length = 795

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 93/271 (34%), Gaps = 35/271 (12%)

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHL-KNCINHIKDQKLRYYYSQAIRDRLQQ 434
            +   ++     R+ EN    + +E  ++           +KD + +    Q +  ++ +
Sbjct: 256 EQPKDVLSNEIIRKLENDVKISKEENKKISKRFDLKLQTSVKDLEEKNMKIQLLEKKIAK 315

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
           L QK   +            +                 +  L+   S  EA L    I  
Sbjct: 316 LEQKIQLQEKNSEMITDDLVQS---------------AEAILNTITSRNEAELTRQFIRD 360

Query: 495 --PAILQEQYQELADIRYD---NNELQ-KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             P    +  +++  + +    N E   K+ + L  +F E      +    R  +  +  
Sbjct: 361 IKPDTFDQ-LEKIVGVVFTKAINEEHSTKICAKLSKNFHENWDKDDKTAFVRKDDGTYET 419

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR------LLSRQKEEIEKQI 602
           +++++ R  +   +     E  +   ++ + + +    + +       L R++ ++E++I
Sbjct: 420 IIRRVARDRKIKAM--GFREVLLSKAQEQFNKLMVFNSKDKKKFAEGSLERRRLDVEEKI 477

Query: 603 AQVTAKGEAE----KTAILISILHEVHIQIH 629
             + A  + E        L +   E++ +I 
Sbjct: 478 NALPAPTDKEFNKGTKMELDNEYDELNTKIK 508


>gi|296217162|ref|XP_002807348.1| PREDICTED: LOW QUALITY PROTEIN: nuclear mitotic apparatus protein
           1-like [Callithrix jacchus]
          Length = 2115

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/208 (10%), Positives = 71/208 (34%), Gaps = 17/208 (8%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
            Q  +  + + S   +  ++  +  ++K  + R   +  +           E       +
Sbjct: 546 SQSLRHQVEQLSSSLKQKEQQLKEVEEKQEATRRDHAQTLATAAE------ERE---AFL 596

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                  +Q + L   +    +L+ L   L +    +          +  +    + +++
Sbjct: 597 RERDAALQQLEALEKEKAT--KLEILQQQLQAANEARDSAQSSVTEAQREKAELSQKVEE 654

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE-- 610
           L  +V  A       +A + ++    Q           ++++K+++++Q+  +    +  
Sbjct: 655 LQARVEIACQEQHEAQAQVAELEVQLQSEQQKANEKERVAQEKDQLQEQLQALKESLKVT 714

Query: 611 ----AEKTAILISILHEVHIQIHQIESQ 634
                E+       L E   +I +++++
Sbjct: 715 KGSLEEEKRRAADALEEQQHRISELKAE 742


>gi|281343619|gb|EFB19203.1| hypothetical protein PANDA_017334 [Ailuropoda melanoleuca]
          Length = 5928

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 15/173 (8%)

Query: 480  PSLREAALLLTLINHPAILQEQY-------QELADIRYDNNELQKLWSFLFSDFVEQKYF 532
             +  E  L  T+ + P +LQ+Q        +ELA+ +    +LQK+   L     E    
Sbjct: 2445 EANVEKLLSDTIASDPGVLQQQLATTKQLQEELAEHQVAVEKLQKVAHDLMEIEGE-PAP 2503

Query: 533  LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              + +     +     +L +           SA  +  I   +   +   +L +  R + 
Sbjct: 2504 DRKHV-----QETTDSILSRFQSLSSSLAERSALLQKAIARSQSVQESLESLLQSIREVE 2558

Query: 593  RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
            +  EE  +Q+A ++     E  A  + +  ++  Q   +E+   M+  F + +
Sbjct: 2559 QNLEE--EQVASLSLGVIQEALATNMKLKQDIARQKSSLEATREMVTRFMETA 2609


>gi|256374799|ref|YP_003098459.1| ABC transporter [Actinosynnema mirum DSM 43827]
 gi|255919102|gb|ACU34613.1| ABC transporter related [Actinosynnema mirum DSM 43827]
          Length = 590

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 45/127 (35%), Gaps = 10/127 (7%)

Query: 511 DNNEL--QKLWSFLFSDFVEQKYFLP-EEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            ++    +++   + + F +         I + L  R      +Q           +   
Sbjct: 462 SHDRYLVERVCDKVVALFGDGGLTDLVGGIEEYLQRRD-----RQSAAAAAPVAAATVKA 516

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            ++  D R   ++   L +R   L +++  +   +A+     + E+   L + L  V  +
Sbjct: 517 PSSAADQRAARKELSRLERRLEALQKKEAGLHASLAEA--ATDPERLMALGAELKAVLAE 574

Query: 628 IHQIESQ 634
             ++E Q
Sbjct: 575 AAEVEEQ 581


>gi|229496632|ref|ZP_04390346.1| ClpB protein [Porphyromonas endodontalis ATCC 35406]
 gi|229316529|gb|EEN82448.1| ClpB protein [Porphyromonas endodontalis ATCC 35406]
          Length = 722

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/270 (11%), Positives = 71/270 (26%), Gaps = 34/270 (12%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + +  +DM              +    +   +      I        
Sbjct: 77  RIIRGDVPENLHDKKIFSLDMGALIAGAKYQGEFEERLKGVVREVVESQGQI------LL 130

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +         + +   +        R     +    +      K        
Sbjct: 131 FIDEIHTLVGAGKSSGAMDAANILKPALARGELRAIGATTLDEYRKYFEVDKA------L 184

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E    + +++ P        ELA I         +   L   +             R+ +
Sbjct: 185 ERRFQMVMVSEP-------DELASIS--------ILRGLKERYENHHKV-------RILD 222

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 +    R + D  L     +       +   Q  +  +    +SR+ +++E +  
Sbjct: 223 EAILSAVHLSHRYITDRFLPDKAIDLIDEAAARLRIQIDSQPEELDEISRRIKQLEIERE 282

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +  + + EK + L   + E+  Q  ++ S
Sbjct: 283 AIKREHDKEKVSQLSQEIEELRKQESELSS 312


>gi|224093064|ref|XP_002188885.1| PREDICTED: RAD50 interactor 1 [Taeniopygia guttata]
          Length = 988

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA- 427
            +    ++++ P ++ L     +           E    ++   + I+   L     +A 
Sbjct: 97  ESINSHLLKAQPWMEDLDVLIGQVEEIERHLAYLEWISRIEELSDSIQQYLLTNNVPEAA 156

Query: 428 ----------------IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
                           + +R     +      +  G       R      P+      + 
Sbjct: 157 REAAACRPAAVAAEEGLAERRWAEAKPGRPARAAVGGAPLAACRSPQSLPPALGRAPPAG 216

Query: 472 VKGKLSKKPSLREAALLLTLINH--PAILQEQYQ-ELADIRYDNNELQKLWSFLFS---D 525
            + +     ++ +  +   L +   P  + E  + EL        +L  L   L      
Sbjct: 217 REKENMASIAVTKKEVTRDLDHCDIPYYVSEFVERELGSDYDSLGKLDSLIEKLSENKKH 276

Query: 526 FVEQKYFLPEEIHQRLCER---------GFGELLKQ--LDRQVRDAGLWSATTEANIVDV 574
             EQ   +  E+ +R+ +             +LL++  +  +  ++ L  A      +DV
Sbjct: 277 LEEQVLTVSSEVPKRIQKALKNAEDSKKSLSQLLEEETVLSESINSHLLKAQPWMEDLDV 336

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             G  + +  +  +     + EE+   I Q        + A  ++ + E+ I++ +
Sbjct: 337 LIGQVEEIERHLAYLEWISRIEELSDSIQQYLLTNNVPEAASTLAFMAELDIKLQE 392


>gi|218188717|gb|EEC71144.1| hypothetical protein OsI_02969 [Oryza sativa Indica Group]
          Length = 629

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/323 (8%), Positives = 95/323 (29%), Gaps = 10/323 (3%)

Query: 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382
           G+    + +      ++            ++  G+D   F        +           
Sbjct: 140 GNHLKEQLSRFCPLKIIPLWNFRGHSGNAIVEFGKDWHGFRNALAFEDYFGKEGYGKRDW 199

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
                + +    +    E       + + +    D K           +  +L      +
Sbjct: 200 KEKQNQGSNLFGWVARAEDHTSPGLIGDHLRKNGDLKTINDLENEGARKTDKLVANLANQ 259

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVK------GKLSKKPSLREAALLLTLINHPA 496
                R+ ++     +++  S   M     +       ++ K   L +      +  +  
Sbjct: 260 IEVKNRHLQELEVTYNERTTSLEKMMGQREQLLQKYNEEIRKMQQLAQRHSQKIIDENQK 319

Query: 497 ILQEQYQELADIRYDNNELQKLWSF--LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
           +  E   +++++   + EL ++ +        ++Q+          L      +  ++ D
Sbjct: 320 LRSELESKMSELNTRSKELDEIAAKSDYDRRIIDQEKQKNAIKSSHLKLATLEQ--ERAD 377

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
             V          +   V      +Q +   ++  L  +Q +   + +  +    ++   
Sbjct: 378 ENVLKLVREHKREKEAAVKKILKLEQQVDAKQKLELDIQQLKGKLEVMKHMPGDEDSALK 437

Query: 615 AILISILHEVHIQIHQIESQEAM 637
             +  +  E+  ++ ++++ E++
Sbjct: 438 NKIDELSEELQEKMDELDAMESL 460


>gi|189530996|ref|XP_698075.3| PREDICTED: spectrin beta chain, brain 4-like [Danio rerio]
          Length = 4136

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 63/189 (33%), Gaps = 11/189 (5%)

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
             + N +        + L         L +    RE  L   L+          ++L  +
Sbjct: 341 KLRANNQRDYIPPEGKTLGDIERNWTLLERAEHQRERVLQSALMR--------LEQLEQL 392

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGLWS-AT 566
                    L      D ++          QRL E       L+ L   V        A 
Sbjct: 393 AQKFGRKATLRESYLEDTLQLIQQQDLGGLQRLEEAEIAARRLEALGADVLAHEPRFRAL 452

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA-KGEAEKTAILISILHEVH 625
           +E   V  R  Y   + + +R   +  + +++++ + +  A  G+A  T  ++  +  + 
Sbjct: 453 SEMAAVIERDNYHSKVQVIRRNVDIMNRWKDLKQVLQEQRAHVGDAANTFAVLRDIELIS 512

Query: 626 IQIHQIESQ 634
           + + ++++Q
Sbjct: 513 MDLKELQAQ 521



 Score = 37.6 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 80/223 (35%), Gaps = 7/223 (3%)

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL-LT 490
            +++   +   E     R   +      ++      +  +L++    ++  L++A  +   
Sbjct: 3335 IEEDVSRRKEEGKALVRRSPRVRDSLSKRLQEVEEIWRNLLEKANQRRQRLQQAEAVQRY 3394

Query: 491  LINHPAILQEQYQELADI--RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
            LI    ++    + L+ +       +++ L   +      +     +     + +     
Sbjct: 3395 LIEWREMMGWLKETLSLMTGEGFGGKVKDLEQMIKKHDEYRTQIDRQLDKSEMVKNDGRR 3454

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ---IAQV 605
            L+++ +    +     A  +   V V + + +  A Y+    L + + E+E+    +   
Sbjct: 3455 LMEEGNSWSHELEERLAELKDLEVRVLEAWTERRAQYQEDIELQQLQRELEQAEHWLNTY 3514

Query: 606  TAKGEAEKTAILISILHEVHIQIHQIESQ-EAMIEGFGKMSGR 647
             +   AE     +S + ++  +   +E+  +A  E F  +  R
Sbjct: 3515 ESALRAEDYGESVSDVLDLMKKQEDLEAMIQAQSERFNALQAR 3557


>gi|168044347|ref|XP_001774643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674063|gb|EDQ60577.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 495

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 90/275 (32%), Gaps = 35/275 (12%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQLF 436
           S  + +      ++ R++   +  +      +   N  +    L  YY +   +++   F
Sbjct: 212 SKQVEEAAIAECSQARNYERTNVSSSSRELGRPSTNMAVTPPVLVEYYQRMAVEKMGNEF 271

Query: 437 --QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-KLSKKPSLREAALLLTLIN 493
             ++ + E        KK      +   +  L  S L    K ++    +E  L  +L+ 
Sbjct: 272 SLRQVLEEKDKIIEDQKKKIGDLQRASVTDALKYSRLEHQFKETQAEWAKENKLAKSLME 331

Query: 494 -----HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                   +  +  +E   +     EL+   S L  DF  Q                   
Sbjct: 332 LTKQECMELRNQYQEEKNRVA----ELEAGRSKLEDDFRRQSESSKT------ENEQLKR 381

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            + +L+ ++                +R+       L K+   L  Q +E + QIA + ++
Sbjct: 382 RIAELEAEMITVTTQQGEVNPASTSLRE-------LEKQVHTLEEQLKERDTQIALLESQ 434

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
                    +  L  ++  +  + + E + EG G+
Sbjct: 435 ---------VRELGALNENLTALLNGEQVGEGVGE 460


>gi|126308741|ref|XP_001371553.1| PREDICTED: similar to myosin, heavy polypeptide 1, skeletal muscle,
            adult isoform 1 [Monodelphis domestica]
          Length = 1938

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQSTLDAEIRSRNDAIRIKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1624 DLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQIHLDDAL-----RGQEDLKEQ--LAM 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELRATLEQTERSRKVAEQELLDASERVQLLHTQNTSLINTKKKLETD 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 ISQIQGEMEDMVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828


>gi|47222189|emb|CAG11615.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2009

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 93/281 (33%), Gaps = 26/281 (9%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH---IKDQKLRYY 423
            K   E+    +    D       +N S    + +A LE        +   ++D + +  
Sbjct: 721 EKQELEEQNKRAQVSFDEQMDILRKNVSSAQENHKAALESLAVVEAQNQHLLRDIQEQTK 780

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                +++ +Q    +            +  +  + +   +  +Q    +   +K  +  
Sbjct: 781 LVTEAQNKYEQEMMLHAANVEAMQVAKAQALQAAELRRQLEEKVQRISAELVEAKVSAEE 840

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  +L               EL+ I   N ELQK    L          + E++ Q + +
Sbjct: 841 QEKILK-------------DELSKIERSNEELQKQNGILHEQIQTMSTKMAEKLTQAVGD 887

Query: 544 RGFG-ELLKQ--LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL--LSRQKEEI 598
                 L+++    +Q+ +        E  I + R    Q   L  R R   + R+ +E+
Sbjct: 888 SAAKVSLIEEGKSQQQMLEVLRRFVRREKEIAESRFEIAQEETLRYRLRAENVERELKEV 947

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +  +         E+  + +  L +    + + E+   +IE
Sbjct: 948 QDSMR-----SSKERMEVAVKTLAQHDDLMKKTETMNILIE 983


>gi|83944427|ref|ZP_00956881.1| hypothetical protein EE36_09290 [Sulfitobacter sp. EE-36]
 gi|83844750|gb|EAP82633.1| hypothetical protein EE36_09290 [Sulfitobacter sp. EE-36]
          Length = 863

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 60/209 (28%), Gaps = 12/209 (5%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL- 491
           ++ F           R       + D      R +         S   +LR   L+  + 
Sbjct: 412 RRFFDPLAAAVIEQRRDLLWAKGNADTLAQVLRAVSYRPEDVFRSDTAALRLRRLIERIE 471

Query: 492 --INHPAILQEQYQELADI--RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
               +  +  E   E+AD          + + +         +  L E +     +    
Sbjct: 472 VRARY-GLSDEVQTEIADDLWDLAIELEEGVLADALDRMRRAQERLQEAMKNGASDAEIA 530

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--FRLLSRQKEEIEKQIAQV 605
           EL+++L R   D        +A   +     Q       +     L R  +    +I ++
Sbjct: 531 ELMEELRRATDDYMRQLQRQQAQEGENGDQQQGQQGETMQMTQDDLQRMMD----RIQEL 586

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQ 634
             +G   +    +  L E+   +   + Q
Sbjct: 587 MEQGRMAEAEQALRELQEMMGNMRVTQGQ 615



 Score = 37.9 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 76/240 (31%), Gaps = 39/240 (16%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           + +    +               +A  +    P  ++               + +   LL
Sbjct: 371 NLIDDFSKHPWANLPVTVTLSVLDASEQQATTPPTQMTLPGRRFFDPLAAAVIEQRRDLL 430

Query: 490 TLINHPAILQEQYQELA---DIRYDNN----ELQKLWSFLF--------SDFVEQKYFLP 534
               +   L +  + ++   +  + ++     L++L   +          +   +     
Sbjct: 431 WAKGNADTLAQVLRAVSYRPEDVFRSDTAALRLRRLIERIEVRARYGLSDEVQTEIADDL 490

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDA--GLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
            ++   L E    + L ++ R        + +  ++A I ++ +  ++A   Y R     
Sbjct: 491 WDLAIELEEGVLADALDRMRRAQERLQEAMKNGASDAEIAELMEELRRATDDYMR----- 545

Query: 593 RQKEEIEKQIAQVTAKGE-------------AEKTAILISILHEVHIQIHQIESQEAMIE 639
               ++++Q AQ    G+              +    ++  + E+  Q    E+++A+ E
Sbjct: 546 ----QLQRQQAQEGENGDQQQGQQGETMQMTQDDLQRMMDRIQELMEQGRMAEAEQALRE 601


>gi|328791967|ref|XP_392873.4| PREDICTED: intraflagellar transport protein 74 homolog [Apis
           mellifera]
          Length = 620

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 67/200 (33%), Gaps = 19/200 (9%)

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
           +R  +     ++L Q         +    R   L+ ++       ++  + L +      
Sbjct: 209 SRIENMFEERKQLEQKLTKIQNQLEDEKKRTERLIDSM--DSDTKEKYDELLKEKIKVEE 266

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV-RDAGLWSATTEANIV 572
           +  +L   L   + EQ Y   E     L +      LK ++ +  RD          +  
Sbjct: 267 KANELQQKLDELYKEQLYLEEEITLSPLKQEAVKLHLKIIEMEEKRDKLKEEEKQRISPE 326

Query: 573 DVRQGYQQAL--------ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           + ++   Q +        A   +     +Q +E E+++ Q+ A  E  ++          
Sbjct: 327 EEKEKLLQKIKQDNMDIAAAEAQLSEKKKQIQETEQKLEQLEADIEDTQSEK-------- 378

Query: 625 HIQIHQIESQEAMIEGFGKM 644
            I+  ++  +E  IE F   
Sbjct: 379 QIKYKELRKREETIEQFMSS 398


>gi|328768610|gb|EGF78656.1| hypothetical protein BATDEDRAFT_26518 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1617

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 34/296 (11%), Positives = 82/296 (27%), Gaps = 31/296 (10%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTP-----DERAELEIHLKNCINHIKDQKLR 421
             + A E    E    +  +                  +E  +    L      IK +  +
Sbjct: 1113 ERDALENENQEHASHIKSIMMDANAREQHIRHLTGQLEENTKSVGELDELHGQIKSRDEQ 1172

Query: 422  -YYYSQAIRDR---LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
               + Q I +    L  L  +            +    H          +Q    + +  
Sbjct: 1173 ITVFQQDIAEHKMTLSDLTSQLKDRDEQITVLNQSILEHETSLKHLTSQIQERDTQVEAL 1232

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 +E A+L   +  P         L+ I    ++L      +     + +     + 
Sbjct: 1233 NAAH-KERAILPVAVETPEPDPAVALHLSTIDELKSQLDTKDQHISHASKQLEDLALAKA 1291

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEAN---------------IVDVRQGYQQ-- 580
                    +   +++L+ ++       A  E                 + D++   +   
Sbjct: 1292 EVEAGAAAYATRVQELETKLATVHDEKAAQETTTRSVALPTDPNLTQLVDDLKAELEDRD 1351

Query: 581  --ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                 L +  + +  ++EE+  Q+ Q       +    + + L +V  Q+  I S+
Sbjct: 1352 NTIELLEQSLQQIQTKEEELLSQLQQNMNAANPD--EAIQAELQQVRQQLDLINSE 1405


>gi|326437223|gb|EGD82793.1| hypothetical protein PTSG_12024 [Salpingoeca sp. ATCC 50818]
          Length = 956

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 98/313 (31%), Gaps = 14/313 (4%)

Query: 334 AIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR 393
              L   H      +   L +  ED  S +    K A EK +                + 
Sbjct: 195 MTRLRDEHETAAASLRRTLKADEEDMRSQV-TAAKAAHEKDMASLKQQHSAALAELKASH 253

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRY--YYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
           +    +  A+L+  L+     IKD+  +      +     + +L +++  E     +  +
Sbjct: 254 AKEQEEAIAKLKKDLQAETQTIKDKHSKEIAALKRDHEAAVAKLKEEHSKEKEQITQEAE 313

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
             A+ +         ++         +   LRE  L      + +I +E  ++ A    +
Sbjct: 314 AAAKAKTNIDDEISALRKEKQDALEKEMRELREKRLRE---ENDSIEKELKEKRAAAEKE 370

Query: 512 NNELQKL----WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
                +          S          +E  ++  +    E  K++              
Sbjct: 371 MEAEVEKKEKDHKAAMSKLAADHSKQLQE-KEKKSKAELEETEKEVKEAGEKKLAELHAE 429

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             ++ D     +Q   L ++   L +Q E+   ++ +   K + E+ A       E+   
Sbjct: 430 IQSLQDACD--EQERELREKLPALKQQLEDETGELEKSLEKTKLEREAAE-REQQEIRAS 486

Query: 628 IHQIESQEAMIEG 640
           +  + ++   +EG
Sbjct: 487 LDALRNELKSLEG 499


>gi|297708490|ref|XP_002830998.1| PREDICTED: LOW QUALITY PROTEIN: myosin-XVIIIb-like [Pongo abelii]
          Length = 2163

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/251 (9%), Positives = 74/251 (29%), Gaps = 28/251 (11%)

Query: 410  NCINHIKDQKLRYYYSQAIRDRLQQLFQ-KYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
                       +        + ++QL Q +   E               DQ+   + + Q
Sbjct: 1285 RLWKLESSALEQQKIQSQQENTIKQLEQLRQRFELEIERMKQMHQKDREDQEEELEDVRQ 1344

Query: 469  SSLVKGKLSKKPSLREAALLLTLINHPA----ILQEQYQELADIRYDNNELQKLWSFLFS 524
            S   + +  +    +E      +++       ++     ++    +D    ++L   L  
Sbjct: 1345 SCQKRLRQLEMQLEQEYEEKQMVLHEKQDLEGLIGTLCDQIGHRDFDVE--KRLRRDLRR 1402

Query: 525  --DFVEQKYFLPEEIHQ---RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
                +     L   +      + +    ++  QL++          T +    D+   + 
Sbjct: 1403 THALLSDVQLLLGTMEDGKTSVSKEELEKVHSQLEQSEAKCEEXLKTQKVLTADLESMHS 1462

Query: 580  QALALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILIS--------------ILHE 623
            +   + +   L+  Q   ++ + A +      + +    L+                + E
Sbjct: 1463 ELENMTRNKSLVDEQLYRLQFEKADLLKRIDEDQDDLNELMQKHKDLIAQSAADIGQIQE 1522

Query: 624  VHIQIHQIESQ 634
            + +Q+ + + +
Sbjct: 1523 LQLQLEEAKKE 1533


>gi|282900247|ref|ZP_06308199.1| hypothetical protein CRC_01636 [Cylindrospermopsis raciborskii
            CS-505]
 gi|281194862|gb|EFA69807.1| hypothetical protein CRC_01636 [Cylindrospermopsis raciborskii
            CS-505]
          Length = 1184

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 84/205 (40%), Gaps = 19/205 (9%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
              +L Q +++ + +H    + W K  +  +Q+ P   L++  +   +  +  +  E    
Sbjct: 891  SGKLFQTYEELLWQHVQRLKEWLKLTQ--EQQLPFGNLLKDHIAMLEELRTDNSHEQEFF 948

Query: 489  LTLINHPAILQEQYQELADI-RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              +      L+E   +L  +  +  ++L+           ++     +E+   L      
Sbjct: 949  QLVRGRRDDLEEYIDDLQKLRSFFTSQLK---------IFQEAQQSLKELKPELRHIEEE 999

Query: 548  ELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQAL--ALYKRFRLLSRQKEEIEKQIAQ 604
            ELL+Q+        +   T++ +++ ++ +  QQ +   L ++   L R+ E  EK++  
Sbjct: 1000 ELLEQVKSVDEILNMDDPTSKIHLLPNLLKPVQQKIQEILRQKIGELHREIENQEKEMRD 1059

Query: 605  VTAKGEAEKTAILISILHEVHIQIH 629
                   E+   +++ + E+  +I+
Sbjct: 1060 YI----QEQYPAIVNEISEITQEIN 1080


>gi|262066192|ref|ZP_06025804.1| replicative DNA helicase [Fusobacterium periodonticum ATCC 33693]
 gi|291380099|gb|EFE87617.1| replicative DNA helicase [Fusobacterium periodonticum ATCC 33693]
          Length = 447

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 43/138 (31%), Gaps = 11/138 (7%)

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E AL+  +      L E    +    +   E  +++  + + F E +   P  + + + 
Sbjct: 15  AERALIGGIFFDVNSLDEIKYIIKPDDFYQKEHAEIYKAIDNLFSENRGVDPILVVEEIK 74

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +                  +    T     +         A   + + + R+  ++  +I
Sbjct: 75  KSDLKN----------KEDILEVLTNIIDENTSSYNLLEYAELIKEKAMLRKLGQVGMEI 124

Query: 603 AQVTAKGEAEKTAILISI 620
           A+ TA  +      ++  
Sbjct: 125 AK-TAYTDVRTAEEIMDE 141


>gi|218295111|ref|ZP_03495947.1| Peptidase M23 [Thermus aquaticus Y51MC23]
 gi|218244314|gb|EED10839.1| Peptidase M23 [Thermus aquaticus Y51MC23]
          Length = 426

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 73/219 (33%), Gaps = 13/219 (5%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +A   R + L Q+         +   + ++        +  ++  + + +  +    RE
Sbjct: 30  LEAEAARAKALEQEAQARIQKLNQALYRLSKRVADLLQEKARLEKEIARLEAERMALRRE 89

Query: 485 AALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSD-------FVEQKYFLPEE 536
            A L   +      + +  ++LA ++     LQ L   L  +        +  + F    
Sbjct: 90  IARLEEAVRETEARIAKLEKDLAALK---ERLQALMRSLHRERAGRYLPLLRAQSFTDLA 146

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +  R       +    + +            E   + ++   ++  AL +  R L  +++
Sbjct: 147 VRARWVGYISKQDADLVRQLQATLKALGEERERLKLLLQSLSEKERALAETQRKLEAERQ 206

Query: 597 EIEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +   +A  +   +G+       +S    +   + Q+++
Sbjct: 207 NLLTTLASLRKEEEGKKALLRDALSERQRLQSALAQLQA 245


>gi|193784147|dbj|BAG53691.1| unnamed protein product [Homo sapiens]
          Length = 632

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 109/354 (30%), Gaps = 29/354 (8%)

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED-- 358
           A     +   WK      L  + D      A +  +          +      +  ED  
Sbjct: 2   AANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLR 61

Query: 359 ----PDSFIRCYGKTAFEKLIVESLPLVDMLWKRET---ENRSFNTPDERAELEIHLKNC 411
               P          A  K   E+      ++KR     E       +   E E  LKN 
Sbjct: 62  KQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPEVTIKALKEIIREYEQTLKNQ 121

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
              I  +K +        ++ ++L +  ++  S       K    +     ++  +    
Sbjct: 122 AETIALEKEQKL-QNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLK 180

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            K          E  +++T +       E  Q          E + L   L S     + 
Sbjct: 181 TKYDEETTAKADEIEMIMTDLERANQRAEVAQR---------EAETLREQLSSVNHSLQ- 230

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                +  ++ +    E   ++  +     +  A  E  I  + +  Q+  A   + R  
Sbjct: 231 -----LASQIQKAPDVEQAIEVLTRSS-LEVELAAKEREIAQLVEDVQRLQASLTKLREN 284

Query: 592 SR-QKEEIEKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           S  Q  ++E+Q++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 285 SASQISQLEQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 338


>gi|196008767|ref|XP_002114249.1| hypothetical protein TRIADDRAFT_27651 [Trichoplax adhaerens]
 gi|190583268|gb|EDV23339.1| hypothetical protein TRIADDRAFT_27651 [Trichoplax adhaerens]
          Length = 903

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 80/231 (34%), Gaps = 19/231 (8%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             +    D + +      ++ R+ +L  K   E+    +    N + R+      + M+S
Sbjct: 684 EILITKSDLEEKNAMMTELKTRVDEL--KMENEYQLRLKDMNYNEKIRELTEKFIQEMES 741

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI--RYDNNELQKLWSFLFSDFV 527
              K ++ K    +E         H   + +  ++ A      ++   QKL         
Sbjct: 742 LKTKNQVLKTEKDKEET------RHEEQIHDVLEDHAKELQDLESANNQKL-------MS 788

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E + +   +   +  +  +   L ++D     +      TE     +++   Q     + 
Sbjct: 789 EYEKYQELQAKSQKMQEEYERQLNEMDESKEVSL--QDLTEYYENKLQEKSSQLEQANEE 846

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            + L+R+ +E ++QI +   +   +        L +      +++ +  ++
Sbjct: 847 QQQLTREYDETKRQIEEDVDREIVDIKNKYERRLRDEKEANLRLKGETGIM 897


>gi|168035609|ref|XP_001770302.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678519|gb|EDQ64977.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 2690

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 54/152 (35%), Gaps = 22/152 (14%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
            +++ +E+ +I + + E ++ +        + +        +   E       K+L+ + 
Sbjct: 696 FRKKKEEVKEIDFRDEE-REAFEAELERVQKAQELDRLRKLEE-KEHAVEMAQKELEDRE 753

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
           R A            + R+   +A           R+  E+ +++       + EK  + 
Sbjct: 754 RQAREEEERQAKMEEEAREASARA----------EREALEVAQKVEDERRAWDEEKRQLQ 803

Query: 618 ISI----------LHEVHIQIHQIESQEAMIE 639
           +            L E+  +I + E+++ + E
Sbjct: 804 LEEERRKENARRKLLELEERIAKREAEKKLQE 835


>gi|160915818|ref|ZP_02078026.1| hypothetical protein EUBDOL_01834 [Eubacterium dolichum DSM 3991]
 gi|158432294|gb|EDP10583.1| hypothetical protein EUBDOL_01834 [Eubacterium dolichum DSM 3991]
          Length = 851

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/212 (9%), Positives = 75/212 (35%), Gaps = 11/212 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI + +   R +++          +  +++    + +      + + A+L       
Sbjct: 316 YRQYIEKDAALERRFQRVQVAEPTVEDTISILRGLKDRFESYHGVKILDEAILAAATLSN 375

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-------- 547
             + +++     I   +     L   + S   E      + +  ++ E            
Sbjct: 376 RYITDRFLPDKAIDLVDEACATLRVEMESMPQELDELQRKIMQLQIEETALKKEEDKKSL 435

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E L ++ + +++  L          D +   +++     +   L + + ++E+   +   
Sbjct: 436 ERLAEIRQDLKELQLKKDELYTKWEDEKAVLEESKDAKVK---LEKARLDLEQAQNEARY 492

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +  A+     I  L ++  +  +   ++A+I+
Sbjct: 493 EDAAKLQYATIPHLEKLIKEQAENNHEDALIQ 524


>gi|118093099|ref|XP_421787.2| PREDICTED: similar to p167 [Gallus gallus]
          Length = 1505

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 2/107 (1%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    E+I  +L        L +    ++   L     E + + V    + +   ++R  
Sbjct: 643 QSMPSEQIRNQLT--AMSSALAKALAVIKPPHLLQEKEEQHQLAVTAFLKNSRKEHQRIL 700

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +  EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 701 ARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 747



 Score = 37.2 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 39/109 (35%), Gaps = 9/109 (8%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI--- 598
            +    +L      +               ++ R+   ++L + +    L +++ E+   
Sbjct: 676 EKEEQHQLAVTAFLKNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKV 735

Query: 599 ----EKQIAQVTAKGEAEKTAILISILHE--VHIQIHQIESQEAMIEGF 641
               E+++ Q   + E E+       + +  V  ++ QI+  E   + F
Sbjct: 736 RKAEEERLRQEAKEREKERILQEHEQIKKKTVRERLEQIKKTELGAKAF 784


>gi|83026774|gb|ABB96414.1| masticatory myosin heavy chain 2M [Canis lupus familiaris]
          Length = 1880

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 40/123 (32%), Gaps = 3/123 (2%)

Query: 514  ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            EL ++ + +     E++            +R    L   L+ + +         +    D
Sbjct: 1493 ELAQVKADIDRRIHEKEEEFEATRKNH--QRAIESLQASLEAEAKGRAEALRLKKKMETD 1550

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-ILISILHEVHIQIHQIE 632
            + +   Q     K    L +  + +++QI  +  + + +      +   + +  +   + 
Sbjct: 1551 LNEMEIQLDHANKNNSELVKTLKRLQQQIKDLQVQMDEDARQHEELREQYNLQERRLSLL 1610

Query: 633  SQE 635
              E
Sbjct: 1611 QTE 1613


>gi|114681597|ref|XP_001160659.1| PREDICTED: myosin, heavy polypeptide 7B, cardiac muscle, beta isoform
            1 [Pan troglodytes]
          Length = 1922

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 86/279 (30%), Gaps = 13/279 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
              +  +  +   L   D        N        +A L+   +     ++ +K       
Sbjct: 1552 ELSQVKAEVDRKLAEKDEECANLRRNHQRAVESLQASLDAETRARNEALRLKKKMEGDLN 1611

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS---LR 483
             +  +L    ++     +       +    +  +   QRL      + +  ++ +     
Sbjct: 1612 DLELQLGHATRQATEAQAATRLMQAQLKEEQAGRDEEQRLAAELHEQAQALERRASLLAA 1671

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E   L   +      +   ++  ++      L  L S       ++K    +    +L  
Sbjct: 1672 ELEELRAALEQGERSRRLAEQ--ELLEATERLNLLHSQNTGLLNQKKKLEAD--LAQLSG 1727

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   ++ + + +     +        ++++    +  L +  + L +   E++ ++ 
Sbjct: 1728 EVEEAAQERREAEEKAKKAITDAA-MMAEELKKEQDTSAHLERMKKTLEQTVRELQARLE 1786

Query: 604  QVTAK---GEAEKTAILISILHEVHIQI--HQIESQEAM 637
            +       G  ++   L + + E+  ++   Q +  EA+
Sbjct: 1787 EAEQAALRGGKKQVQKLEAKVRELEAELDAEQKKHAEAL 1825


>gi|114600686|ref|XP_517817.2| PREDICTED: retinoic acid induced 14 isoform 15 [Pan troglodytes]
          Length = 973

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 101/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 587 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 644

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 645 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLIQLTNVSRAKAEDALSEMKSQYSKVLN 704

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 705 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 763

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 764 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 823

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 824 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 861


>gi|94730353|sp|P46660|AINX_MOUSE RecName: Full=Alpha-internexin; Short=Alpha-Inx; AltName: Full=66
           kDa neurofilament protein; Short=NF-66;
           Short=Neurofilament-66
          Length = 504

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/316 (9%), Positives = 83/316 (26%), Gaps = 34/316 (10%)

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           G     +  S G D         +    +   +               +      +   L
Sbjct: 63  GLAYRRLPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRAL 122

Query: 405 EIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           E  L        +   +   + + +R+   QL +              ++    + +   
Sbjct: 123 EAELAALRQRHAEPSRVGELFQRELRELRAQLEEASSARAQALLE---RDGLAEEVQRLR 179

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD----NNELQKLW 519
            R  + S  +    +    ++  +    +    + ++    L ++ +     + E+ +L 
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTE--------A 569
           + L +                L           + L  +   +      ++        A
Sbjct: 240 ATLQASSQAAAEVDVAVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299

Query: 570 NIVDVRQGYQQALALYKRF---------------RLLSRQKEEIEKQIAQVTAKGEAEKT 614
              +  +  ++ +  Y+R                  L RQ  E+E++       G  +  
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEER-HSAEVAGYQDSI 358

Query: 615 AILISILHEVHIQIHQ 630
             L S L     ++ +
Sbjct: 359 GQLESDLRNTKSEMAR 374


>gi|56207500|emb|CAI20697.1| novel protein similar to human and mouse GRIP and coiled-coil
           domain containing 1 (GCC1) [Danio rerio]
          Length = 802

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 57/147 (38%), Gaps = 10/147 (6%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQV 557
           QE  +  A +  D  + Q     L   F E K  +  + H+R  E+G   L L++L + +
Sbjct: 215 QELEELQARLEEDKKQHQAELQNLQEQFAESKARVITQQHEREQEQGDHALMLRELQKLL 274

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKR-------FRLLSRQKEEIEKQIAQVTAKGE 610
           ++        E  + D R    +A+    R        + + ++++E++K +     +  
Sbjct: 275 QEERGLRQDAELKLEDARATLAEAMQAADRGLDYESQLKEIIQERDELKKSLKAAAVENS 334

Query: 611 A--EKTAILISILHEVHIQIHQIESQE 635
               +   L     ++    +Q   QE
Sbjct: 335 KPDPRVEELQQENADLKAHFNQQLQQE 361


>gi|25151529|ref|NP_508848.2| Lin-5 (Five) Interacting protein family member (lfi-1)
           [Caenorhabditis elegans]
 gi|21629445|gb|AAM69078.1|U64862_3 Lin-5 (five) interacting protein protein 1, isoform a
           [Caenorhabditis elegans]
          Length = 2396

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/315 (9%), Positives = 96/315 (30%), Gaps = 44/315 (13%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     A      ++   ++    +   +   ++ D+  +L   +    N I+++     
Sbjct: 678 KLRASEAERVAAEKARKFLEDELAKLQASFQKSSTDDARKLRDEMDEHTNSIQEEFKTR- 736

Query: 424 YSQAIRDRLQQLFQK---------YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
               +  R++ L ++          + +          + + R ++  +Q      + + 
Sbjct: 737 -IDELNRRVENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRN 795

Query: 475 KLSKKPSLREA---------ALLLTLINHPAILQEQYQELADIRYDNNELQK-------- 517
                  LRE           +L  L +         Q+L +I+   ++ QK        
Sbjct: 796 IQKDLDDLREKYDRVHTDNEKILGELEHAQKAAHLAEQQLKEIKIQRDDYQKQKDEHARH 855

Query: 518 ---LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
              +   L ++   ++                 + +   + Q+      +   +  I   
Sbjct: 856 LFDIRHKLETEIKGRQDLEKNGARNNDELDKLRQTISDYESQINLLRRHNDELDTTIKGH 915

Query: 575 RQGYQQALALYK-------RFRLLSRQKEEIEKQI--AQVTAKGE----AEKTAILISIL 621
           +                  +   L+++ ++ ++ I   ++   G+     E    L + L
Sbjct: 916 QGKITHLENELHSRSGEIEKLNDLNQRLQKEKQDILNQKLKLDGDVQALKETIRKLENEL 975

Query: 622 HEVHIQIHQIESQEA 636
            ++  +  ++  +EA
Sbjct: 976 EKLRNENKELVGKEA 990



 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIAQV 605
             E ++++++ + D        E  I +V   +++ L   +  +  L R+  E+E +++Q+
Sbjct: 1128 KERIERIEKNILDRYHDDELVEHKIREVNDRWKRELERLENEKDDLERRIRELEDELSQI 1187

Query: 606  TAKGEA------EKTAILISILHEVHIQIHQI 631
                +       E      + + ++   I  +
Sbjct: 1188 GRGNDKTENDITELKRKHAAEIDKLKSDISAL 1219


>gi|148539957|ref|NP_666212.3| alpha-internexin [Mus musculus]
 gi|17390900|gb|AAH18383.1| Ina protein [Mus musculus]
          Length = 501

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/316 (9%), Positives = 83/316 (26%), Gaps = 34/316 (10%)

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           G     +  S G D         +    +   +               +      +   L
Sbjct: 63  GLAYRRLPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRAL 122

Query: 405 EIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           E  L        +   +   + + +R+   QL +              ++    + +   
Sbjct: 123 EAELAALRQRHAEPSRVGELFQRELRELRAQLEEASSARAQALLE---RDGLAEEVQRLR 179

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD----NNELQKLW 519
            R  + S  +    +    ++  +    +    + ++    L ++ +     + E+ +L 
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTE--------A 569
           + L +                L           + L  +   +      ++        A
Sbjct: 240 ATLQASSQAAAEVDVAVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299

Query: 570 NIVDVRQGYQQALALYKRF---------------RLLSRQKEEIEKQIAQVTAKGEAEKT 614
              +  +  ++ +  Y+R                  L RQ  E+E++       G  +  
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEER-HSAEVAGYQDSI 358

Query: 615 AILISILHEVHIQIHQ 630
             L S L     ++ +
Sbjct: 359 GQLESDLRNTKSEMAR 374


>gi|41059877|gb|AAF29436.2| periplakin [Mus musculus]
          Length = 1754

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 73/212 (34%), Gaps = 16/212 (7%)

Query: 439  YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
               +     +  ++  +    +GP + L++  ++K             L  TL       
Sbjct: 903  RRQQLENEVKSAQEEIQTLKDQGPQESLVRKEVLKKVPDPALEESFQQLQQTLAEEQHKN 962

Query: 499  QEQYQELADIRYDNNELQK----------LWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
            Q   +EL  ++     L++          +   L  +    +     ++ + L      +
Sbjct: 963  QLLQEELGALQLRLQALEQEARDGGQEYVVKEVLRIEPDRAQEDEVLQLREELEALRRQK 1022

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
              ++ +  +    + +   E + V  +   ++ + L +    L  +   ++++  +    
Sbjct: 1023 GAREAEVLLLQQRVAALAAEKSRVQEKVTEREVVKL-QNDPQLEAEYRRLQEEHQREGTL 1081

Query: 609  GEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             E ++  +       +  ++ ++E + AM EG
Sbjct: 1082 REKQEEELSF-----LQAKLRRLEKERAMAEG 1108


>gi|66352015|gb|AAY44742.1| lamin C [Sus scrofa]
          Length = 572

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------DLRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         + E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LADKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|34535303|dbj|BAC87273.1| unnamed protein product [Homo sapiens]
          Length = 1185

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/299 (10%), Positives = 80/299 (26%), Gaps = 29/299 (9%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK----DQ 418
           +R +     +    E           E  +       +        K     I+     +
Sbjct: 262 LRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISE 321

Query: 419 KLRYYYSQAIRDRLQ-------QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
             +    + +  RLQ       +     +           K    +D +     L     
Sbjct: 322 AGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDP 381

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
               +  + S +E  L +    +  +     + L+ I  +  E++ L   L    +    
Sbjct: 382 KHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANE 441

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-------DVRQGYQQALAL 584
            L +++   +   G  E L  +  Q   A                   +V Q   Q   +
Sbjct: 442 ALKKDLEGVIS--GLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIV 499

Query: 585 YKRFRLLSRQKEEIEKQIAQVTA--------KGEAEKTAILISILHEVH-IQIHQIESQ 634
                 + ++  E+E  + +           +G+       +     +   + +Q++ +
Sbjct: 500 AMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEE 558


>gi|14195015|sp|Q9R269|PEPL_MOUSE RecName: Full=Periplakin
 gi|4426974|gb|AAD20642.1| periplakin [Mus musculus]
          Length = 1755

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 73/212 (34%), Gaps = 16/212 (7%)

Query: 439  YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
               +     +  ++  +    +GP + L++  ++K             L  TL       
Sbjct: 903  RRQQLENEVKSAQEEIQTLKDQGPQESLVRKEVLKKVPDPALEESFQQLQQTLAEEQHKN 962

Query: 499  QEQYQELADIRYDNNELQK----------LWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
            Q   +EL  ++     L++          +   L  +    +     ++ + L      +
Sbjct: 963  QLLQEELGALQLRLQALEQETRDGGQEYVVKEVLRIEPDRAQEDEVLQLREELEALRRQK 1022

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
              ++ +  +    + +   E + V  +   ++ + L +    L  +   ++++  +    
Sbjct: 1023 GAREAEVLLLQQRVAALAAEKSRVQEKVTEREVVKL-QNDPQLEAEYRRLQEEHQREGTL 1081

Query: 609  GEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             E ++  +       +  ++ ++E + AM EG
Sbjct: 1082 REKQEEELSF-----LQAKLRRLEKERAMAEG 1108


>gi|330811309|ref|YP_004355771.1| hypothetical protein PSEBR_a4359 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379417|gb|AEA70767.1| Conserved hypothetical protein; putative exported protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 136

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           Q   L +R +   RQ+EE+ KQ+     + E+     L      + +Q+ + ++ 
Sbjct: 40  QIAELQQRLKDSERQREELSKQLQSADTERESALLGRLRQENQRLKLQLKEAQAS 94


>gi|325661457|ref|ZP_08150083.1| hypothetical protein HMPREF0490_00817 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472406|gb|EGC75618.1| hypothetical protein HMPREF0490_00817 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 302

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 57/186 (30%), Gaps = 11/186 (5%)

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK-YLNSPET 239
                               +++  ++       G+++ +  RT  +   +        T
Sbjct: 101 WYKEGIMPWTVKKFKLGYSYKYKRNVVPLRYWLTGELMGYNMRTTVENYDLFDIKKYYIT 160

Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
             + K  NLY  +     ++KS    V  +  S +       D L          V+  G
Sbjct: 161 PGYPKQINLYGLYENRESIEKSDYVVVVESEKSVL-----KRDSL-----CDSTCVAVSG 210

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
             +++ Q R+L  L+  I++CFD D       +          +      + ++   + P
Sbjct: 211 HEISDEQARILIGLNKEIIICFDKDVDINHVRHCCEKFYHIRKVSYIYDRWGIIGEKDSP 270

Query: 360 DSFIRC 365
                 
Sbjct: 271 VDARNQ 276


>gi|323351216|ref|ZP_08086872.1| cell division protein Smc [Streptococcus sanguinis VMC66]
 gi|322122440|gb|EFX94151.1| cell division protein Smc [Streptococcus sanguinis VMC66]
          Length = 1178

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 78/256 (30%), Gaps = 44/256 (17%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D + R  Y   +  +L    +K I          ++ A +  ++   +   Q+   K   
Sbjct: 219 DGQRRELYLDVLVAQLTANKEKLIKAEEDLTNIQQELAAYYSKRDELEVENQTLKAKRHE 278

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDN-----------NELQKLWSFL--F 523
             +    +     +L+    ++ +  +++   + ++             L  L   L   
Sbjct: 279 LNQTLSDDQ---ASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLAQI 335

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
              +E K     +I  +L +       + +     +   +S   +  I  +R+   Q + 
Sbjct: 336 ESNIEDKQAELSQIAAQLTDNE-----ESIAALEAELADFSDDPDQLIEHLRE---QYVK 387

Query: 584 LYKRFRLLSRQKEEIEKQIA--------------------QVTAKGEAEKTAILISILHE 623
           L +    LS     +E Q+A                    + +   E      L      
Sbjct: 388 LMQEEANLSNDLTSLESQLASELKLAESKKADYAKLQADLEASQTQEQAGLEELEIARQA 447

Query: 624 VHIQIHQIESQEAMIE 639
           +   +   +SQ  ++E
Sbjct: 448 LKNLLADYQSQVQLVE 463



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 97/285 (34%), Gaps = 18/285 (6%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             +  +  ++V  L        +  E+ +    +  A      +  + +   +  R+  +
Sbjct: 221 QRRELYLDVLVAQLTANKEKLIKAEEDLTNIQQELAAYYSKRDELEVENQTLKAKRHELN 280

Query: 426 QAIRDRLQQLFQKYIT----EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Q + D    L +        E        + +     ++   +RL   S    ++     
Sbjct: 281 QTLSDDQASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLAQIESNIE 340

Query: 482 LREAALLLTLINHPAILQEQYQELADI-----RYDNNELQKLWSFLFSDFVE--QKYFLP 534
            ++A L          L +  + +A +      + ++   +L   L   +V+  Q+    
Sbjct: 341 DKQAELSQIAAQ----LTDNEESIAALEAELADFSDDP-DQLIEHLREQYVKLMQEEANL 395

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                 L  +     LK  + +  D     A  EA+    + G ++     +  + L   
Sbjct: 396 SNDLTSLESQ-LASELKLAESKKADYAKLQADLEASQTQEQAGLEELEIARQALKNLLAD 454

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +   + + ++ A  + ++T  +  +L ++  +  +  S EA+++
Sbjct: 455 YQSQVQLVEKLEADYKHQQT-KMFELLDDLKNKQARSNSLEAILK 498


>gi|259485548|tpe|CBF82662.1| TPA: DNA repair protein Rad18, putative (AFU_orthologue;
           AFUA_3G05440) [Aspergillus nidulans FGSC A4]
          Length = 1146

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 80/275 (29%), Gaps = 51/275 (18%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
           P+  +      +  S ++P E+ +  +         +D +L   Y   I ++++   Q  
Sbjct: 242 PMNVLSQDMARQFLSSSSPAEKYKFFVKGVQLEQLDQDYRLIEEYGDQIEEKIKSKQQDV 301

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
                   R   +       +  + R  Q  L +     +   +E            I  
Sbjct: 302 --SVLKNRRDAAERKLEMSDQQENLRERQRKLRRQAAWAQVEEQER-----------IRD 348

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
               E++ +   ++++ ++ + +       +    E I                 +  R+
Sbjct: 349 SLIAEISSL---DSKISEVEAEVARCDAAIREVEAEAITA--------------AQYCRE 391

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE----IEKQIAQVTAKGEAE--- 612
           A       +    D+   + +AL      +   R+  E       +I Q+  + + E   
Sbjct: 392 ASAKVDNAQNERNDIEARWNEALNERHELQAEQRRIREHVREANARIQQLQHQVDEETRR 451

Query: 613 --------------KTAILISILHEVHIQIHQIES 633
                         +         EV  QI ++E 
Sbjct: 452 LADLHGGGYSRKLDELERAKQDAMEVRKQIDELEQ 486


>gi|224537132|ref|ZP_03677671.1| hypothetical protein BACCELL_02009 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521187|gb|EEF90292.1| hypothetical protein BACCELL_02009 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 437

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 53/146 (36%), Gaps = 4/146 (2%)

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           N  ++ +E  + +    Y+ + ++ L+ F  + F          I     ++  G+ ++ 
Sbjct: 293 NFMSVYKEATEAIQTENYERSVVRLLYIFYEAYFYNDVQDDINVILSHALKKASGKPMED 352

Query: 553 LDRQVRDA--GLWSATTEANIVDVRQGYQQALALYK-RFRLLSRQKEEIEKQIAQVTAKG 609
               + +A   +     E +  D+ +   +A+   +     L  +  + +  +     KG
Sbjct: 353 ASEILYNAMDKIMEGDLEPDEDDLEEISAEAIEQIQGMAASLQEEIMKAQADMQSAMMKG 412

Query: 610 EAEKTAILISILHEVHIQIHQIESQE 635
           +  +   L   L +  +    +  Q+
Sbjct: 413 DMAEYMRLAQELQQ-KMMQQALGGQQ 437


>gi|212532475|ref|XP_002146394.1| actin cortical patch assembly protein Pan1, putative [Penicillium
            marneffei ATCC 18224]
 gi|210071758|gb|EEA25847.1| actin cortical patch assembly protein Pan1, putative [Penicillium
            marneffei ATCC 18224]
          Length = 1446

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 42/125 (33%), Gaps = 13/125 (10%)

Query: 524  SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                 ++    +E   R  +      +K+L+ +                   +G ++ + 
Sbjct: 1036 ESRAAEEETTIKEQAIREEQEVQEAEIKRLEEEAHRQEDELQKEREAHEARLRGLEEQVR 1095

Query: 584  L--------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                      KR +   R+ +E E ++A   A+ EA K         ++  ++  ++   
Sbjct: 1096 AGKIKKQEEKKRKQAAEREAKEKEARLAAQRAELEAAKERE-----RQLQRELENLDESS 1150

Query: 636  AMIEG 640
            +  EG
Sbjct: 1151 SDEEG 1155


>gi|194380132|dbj|BAG63833.1| unnamed protein product [Homo sapiens]
          Length = 1348

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 36/92 (39%)

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               +L +    ++ A +     E + + V    + +   ++R     +  EE ++++  
Sbjct: 491 AMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARRQTIEERKERLES 550

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           +  + E E+     + L +V     +   QEA
Sbjct: 551 LNIQREKEELEQREAELQKVRKAEEERLRQEA 582


>gi|158291392|ref|XP_312902.4| AGAP003201-PA [Anopheles gambiae str. PEST]
 gi|157017753|gb|EAA44791.4| AGAP003201-PA [Anopheles gambiae str. PEST]
          Length = 1040

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 109/339 (32%), Gaps = 32/339 (9%)

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD-MLWKRETENRSFN 396
              H     + N     R    D       + A  +   ++L L +    +R    +   
Sbjct: 663 FEIHRKKEYKANKERWKRELSMDDTTPKRQRDATLQTQKDNLKLAEAQEEQRLLRVQKTY 722

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
              E  +        ++ ++DQ LR      +  + QQL Q +      + +      R 
Sbjct: 723 IELEMRKFRRKKMGLLHDLEDQLLRD----ELSKKQQQLEQAHAMLIKHHEKTQDLEYRQ 778

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPS---LREAALLLT----LINHPAILQEQYQEL---- 505
           +      +    S   + +L  +       E  LL      L   P  L+++  ++    
Sbjct: 779 QKSVHALREEQISKQHESELRNQNEYMDRAERELLRRHALELKQQPKSLKQKELQIRKQF 838

Query: 506 -ADIRYDNNELQKLWSFLFSDF-VEQKYFLPEEIHQR-------LCERGFGELLKQLDRQ 556
               +    + + L   +      E +  + +++ +        L ++    +   L +Q
Sbjct: 839 RETCKTQTIQYKALKRQILQTTPKEDQKAVIKQLKEEQHRKLTLLGDQYEQSIADMLQKQ 898

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS------RQKEEIEKQIAQVTAKGE 610
                         + D  Q     L  Y+    +       R+++E+E +++   A  E
Sbjct: 899 SLRLDESQEVECHQLKDRLQYELDILTAYQSKNRMQAQAQRDRERKELEDRVSVRRALLE 958

Query: 611 AEKTAILISILHEVHIQIHQI-ESQEAMIEGFGKMSGRL 648
           ++    L     E   +I Q+ E  +  +E F + S R+
Sbjct: 959 SKMETELQQFNQERAERIRQLKEKHDKQLEAFDEESTRM 997


>gi|326433435|gb|EGD79005.1| hypothetical protein PTSG_01976 [Salpingoeca sp. ATCC 50818]
          Length = 6230

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/268 (9%), Positives = 81/268 (30%), Gaps = 22/268 (8%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
                    E+L  +     +    R       N+    +          +  +D  +   
Sbjct: 5580 MSKQSEEREQLQSDMERANEEKVLRAAVKDMSNSLSVDSAAGGGGGGGQSTHRDTVIHRV 5639

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                      +L ++   +     R    N R    +   +   +      ++ ++ +  
Sbjct: 5640 MRARHLREFGRLVERCAVDMEARLRQDVGNFREERAEEREKIEERYEAELAEVEERDASA 5699

Query: 484  ------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                  E            I ++    LA+    + +  +L   L +          E  
Sbjct: 5700 KTGSRDERF---------KIRRKLKTALANF---DKKTARLVEQLEARVRLSANTDTERR 5747

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV--DVRQGYQQALALYKRFRLLSRQK 595
               L +R + E+++       D+ + +   EA     +  + Y++ L   ++ ++  ++ 
Sbjct: 5748 KLELKQRQYNEMVEAFKNFSPDSEVHAQYEEAANQAKEAAEEYKKRLGAERQEQM--KKL 5805

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILHE 623
            +E ++++ +   +    +   ++  L  
Sbjct: 5806 KEEQERLRKERHEKMEAERKRVLQELEA 5833


>gi|324990644|gb|EGC22580.1| DNA repair protein RecN [Streptococcus sanguinis SK353]
          Length = 552

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 84/243 (34%), Gaps = 38/243 (15%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ----KGPSQRLMQSSLVKGKLSKKPSLR 483
           ++ R Q+ F +Y           K    H+ +    +     +  ++L  G+ +     R
Sbjct: 157 LKGRYQETFDRYRGLRKQVLTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQER 216

Query: 484 EAAL-----------LLTLINHPAI-----LQEQYQELADIRYDNNELQKLWSFLFSDF- 526
           +  L             T++++        ++    +L  I   +   ++L   L   + 
Sbjct: 217 DRLLNHKLIADTLTNAYTMLDNEDFSSLTNVRSAMNDLESIEDYDPAYKELSGSLSEAYY 276

Query: 527 -VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +E      E+I   L   G   L  +++ ++      +      + DV   + Q    Y
Sbjct: 277 VLEDVSKRLEDILDGLDFDGDRLL--RVESRLDLINSITRKYGGQVDDVLDYFAQISKEY 334

Query: 586 --------------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                         +  + L R+  E+ ++++Q      A+  A +   L +++++  + 
Sbjct: 335 SLLTGSNLSSEDMDRELKALERELVELAQELSQARHGLAAQLEAEIKQELQDLYMEKARF 394

Query: 632 ESQ 634
           + Q
Sbjct: 395 KVQ 397


>gi|297675076|ref|XP_002815522.1| PREDICTED: ankycorbin-like isoform 1 [Pongo abelii]
 gi|297675078|ref|XP_002815523.1| PREDICTED: ankycorbin-like isoform 2 [Pongo abelii]
 gi|297675080|ref|XP_002815524.1| PREDICTED: ankycorbin-like isoform 3 [Pongo abelii]
          Length = 980

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 97/286 (33%), Gaps = 27/286 (9%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 594 KAFLFERYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 651

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 652 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLN 711

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 712 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 770

Query: 540 RLCERG------------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           +L E              + +L   L+ +V    L    +      V     Q       
Sbjct: 771 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLALKLKESVKEKEKVHSEVVQI---RSE 827

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
              + R+KE I+  +     K + ++   L+    +   ++ +++ 
Sbjct: 828 VSQVKREKENIQTLL-----KSKEQEVNELLQKFQQAQEELAEMKR 868


>gi|291521456|emb|CBK79749.1| Relaxase/Mobilisation nuclease domain [Coprococcus catus GD/7]
          Length = 429

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 39/363 (10%), Positives = 105/363 (28%), Gaps = 32/363 (8%)

Query: 277 VEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID 336
           VEGY  V S  +  V   ++ L         RLL      ++                  
Sbjct: 78  VEGYHLVQSFAEGEVTPELAHLIGQELAD--RLLKGQFEVVITTHLNTRHYHNHIVWNSV 135

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
            ++      +          +  D   R YG +  E    +S+P V    ++E +     
Sbjct: 136 SMVDGHKYHSNAKSYYTEIRKISDDLCRKYGLSIIESNQKKSIPYVQWKAEQEGKPTWRT 195

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
                    +      +    +  +  Y+  +  +     +    E     R   KN   
Sbjct: 196 AIRLDIRESVQESYSWSQFLKEMEKRGYTWKLNRKY-ISLKAPGMERYIRLRSLGKNYSE 254

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH--------------PAILQEQY 502
            + +G   +     + +  +   P  +   +     ++              P  ++E  
Sbjct: 255 EEIRGQILQPKVKRVYQKAVQIHPKKKLTGIQALYYSYLYQMGVLPKRPKRSPYAVREDI 314

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
           ++L          +++        ++      E++          + + +L ++ R    
Sbjct: 315 RKLD---------RRIEQ--IEFLMKHDIITREQLAAY--REPLQKQIAELMKERRRLYR 361

Query: 563 WSATT--EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
              +   E  + ++ +  ++     +    + +   EIE ++ +   + + EK       
Sbjct: 362 NGGSKTGEERLSEINEELKRLRKEVRMTVQIEKHSLEIEARLQEAEEQSQDEKRVEDKER 421

Query: 621 LHE 623
           + +
Sbjct: 422 MQK 424


>gi|145308094|gb|ABP57281.1| hypothetical protein bst005 [Bacteroides uniformis]
          Length = 275

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL---SFLSALLGCSFIESVQRLA 93
           P  DE++PSF  ND    +Y F     GD +    +L      S     + LA
Sbjct: 14 SPLRDEQSPSFKVNDRLNEWYDFGAATGGDLVELGKYLYQTESVS-----EVLA 62


>gi|123468954|ref|XP_001317692.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121900432|gb|EAY05469.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 1297

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 63/158 (39%), Gaps = 11/158 (6%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-GELLKQLD 554
             L    ++L+  +  + E  ++     +  +E+     EE+      +    E +++L+
Sbjct: 349 EELNSTIEKLSSNQSFSEENNQIKDSSENKRIEELEKQIEELRASQNNQESSKEEIQKLN 408

Query: 555 RQVRDAGLWSATTEANIVDVRQGY----QQALALYKRFRLLSRQKEEIEKQIAQVTA--K 608
             + +    +   +    ++         Q   L K    L ++K++++++I  +     
Sbjct: 409 IDIENLKKENENLKKKNTELNDSVDGMNNQINKLNKENNSLQKEKKQLQEKIESLEQQQS 468

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEAM----IEGFG 642
               +     + L  + I+++Q +++++     I+G G
Sbjct: 469 SNDNQFDSSFASLEALKIELNQSKAEKSALNDTIDGMG 506


>gi|71143152|ref|NP_796343.2| myosin-8 [Mus musculus]
 gi|73920236|sp|P13542|MYH8_MOUSE RecName: Full=Myosin-8; AltName: Full=Myosin heavy chain 8; AltName:
            Full=Myosin heavy chain, skeletal muscle, perinatal;
            Short=MyHC-perinatal
 gi|56206255|emb|CAI24991.1| myosin, heavy polypeptide 8, skeletal muscle, perinatal [Mus
            musculus]
          Length = 1937

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHVRVVETMQSTLDAEIRSRNDALRVKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1624 DLNEM-EIQLNHANRLAAESLRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAI 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828



 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 82/257 (31%), Gaps = 35/257 (13%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
             EN      ++  + E  + N I+ I+D++      Q     LQ   ++   E       
Sbjct: 1072 IENDKQQLDEKLKKKEFEISNLISKIEDEQAVEIQLQKKIKELQARIEELEEEIEAERAS 1131

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
              K  + R         +   L +   +                          ++   +
Sbjct: 1132 RAKAEKQRSDLSRELEEISERLEEAGGATSA-----------------------QVEMNK 1168

Query: 510  YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
                E QKL   L    ++ +        ++       EL +Q+D   R           
Sbjct: 1169 KRETEFQKLRRDLEEATLQHEA--TAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSE 1226

Query: 570  NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI- 628
              +++      A A+ K    L +    +E Q++++ +K   E+   LI+ L     ++ 
Sbjct: 1227 LKMEIDDLSSNAEAIAKAKGNLEKMCRTLEDQVSELKSK--EEEQQRLINELTAQRARLQ 1284

Query: 629  -------HQIESQEAMI 638
                    Q++ ++A++
Sbjct: 1285 TEAGEYSRQLDEKDALV 1301


>gi|84500325|ref|ZP_00998591.1| SMC protein [Oceanicola batsensis HTCC2597]
 gi|84392259|gb|EAQ04527.1| SMC protein [Oceanicola batsensis HTCC2597]
          Length = 1151

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 53/147 (36%), Gaps = 11/147 (7%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK---- 551
           +++ +  + LA   +++++  ++   +  D          ++  R  +  F +       
Sbjct: 81  SLIIDNAERLAPAAFNDSDQIEIVRRITRDVGSAYKANSRDVRARDIQMLFADASTGSQS 140

Query: 552 -QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
             L RQ + + L +A  +A    + +       LY+R      +    E+ + +V     
Sbjct: 141 PALVRQGQISELINAKPKARR-RILEEAAGISGLYQRRHEAELKLNAAEQNLKRVD---- 195

Query: 611 AEKTAILISILHEVHIQIHQIESQEAM 637
            +    L   L  +  Q  Q +   A+
Sbjct: 196 -DVIETLTQQLQTLERQARQAQRYRAI 221


>gi|237816231|ref|ZP_04595224.1| ATP-dependent chaperone ClpB [Brucella abortus str. 2308 A]
 gi|237788298|gb|EEP62513.1| ATP-dependent chaperone ClpB [Brucella abortus str. 2308 A]
          Length = 931

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 79/211 (37%), Gaps = 32/211 (15%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++KY+ + +   R ++           +  +++    K +   K  + ++AL+     
Sbjct: 375 EEYRKYVEKDAALARRFQPVFVDEPTAEDTISILRGLKEKYEQHHKVRVSDSALVAAATL 434

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +    +L   + S                       E+ +++
Sbjct: 435 SNRYITDRFLPDKAIDLVDEAASRLRMQVDS-----------------KPEELDEIDRRI 477

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            +   +       T+A   D             R + + ++  ++E++ A++TAK +AEK
Sbjct: 478 MQLKIEREALKVETDAASKD-------------RLQRIEKELSDLEEESAELTAKWQAEK 524

Query: 614 TAILISILHEVHIQIHQIESQEAMIEGFGKM 644
             + ++   ++  Q+ +  +  A+ +  G+ 
Sbjct: 525 QKLGLAA--DLKRQLEEARNALAIAQRNGEF 553


>gi|198425868|ref|XP_002124344.1| PREDICTED: similar to RAS and EF hand domain containing [Ciona
           intestinalis]
          Length = 728

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 41/126 (32%), Gaps = 5/126 (3%)

Query: 519 WSFLFSDFVEQKYFLPE---EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV- 574
            S +         F  E   EI  R+ E      ++Q+   V +    +   +  +    
Sbjct: 138 LSHILERLEHDPSFNRERVGEIWNRMQEENDEIPIEQVIEIVLEELNEAKAEKVAMERKL 197

Query: 575 -RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             +    A  +   +  +  Q  E  ++        E   +  L + L +   ++ +I  
Sbjct: 198 KERATNHADEVRLLYEEMEFQINEERRKTVAEEVVRERALSMNLQNELKQKERELERISQ 257

Query: 634 QEAMIE 639
           ++  +E
Sbjct: 258 RQVALE 263


>gi|195438429|ref|XP_002067139.1| GK24176 [Drosophila willistoni]
 gi|194163224|gb|EDW78125.1| GK24176 [Drosophila willistoni]
          Length = 1944

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 70/220 (31%), Gaps = 16/220 (7%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + +++R Q L Q+  T           +     +     + +       +     S  E 
Sbjct: 1182 ENLKERCQALAQQNETLQQQLNALQNSSTDSNAELVKLSQKLVEEQQAKEELSAKSNEER 1241

Query: 486  ALLLTLINHPA-----ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            A L + +         +  +      ++    +E  +L   L ++         E     
Sbjct: 1242 ASLESQLQANQQRLDTLCSQVEALTQELALKTDENAQLTGKLKAEQDSAGKQSLE----- 1296

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                   + +++L+  +          E    +++     +  L  +   +S Q    +K
Sbjct: 1297 -----LSDAIRKLETSLAKCNHLEQQQEKLQSELQAERTSSNELNSKLLKVSEQISTGQK 1351

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             +A  T     EK   + S + E+  Q+   ++ +  I+G
Sbjct: 1352 DLAHQTDVWTKEKLQ-IESEVQELKQQLQSSQANQEKIQG 1390



 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 11/284 (3%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +          + ++          + +         +   E          + Q+L   
Sbjct: 906  KTENCDELLANLDQAKQNAQKSLADKEKELKEAQSQVQKTEESLKLIQNQLEQQQQLSAA 965

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              +    +L  L ++     S          + + +     +L++++   G L K     
Sbjct: 966  SGEEGAKQLATLQEEINKVKSQEKELQSALGQSQSELASKIKLLEAT--NGNLEKLTQTL 1023

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL----FSDFVEQKYFLPEEIHQ 539
            E  +   L      ++   ++ +       +LQ+    L     S   +Q+    E +  
Sbjct: 1024 E-DIKKQLAESEEQVKLSSEKYSKKDLQLGDLQRQHEALQGKCDSLNQQQETLQTELVAA 1082

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEI 598
            R         LKQL+  +       A  E+     R        L K+  + L ++ +EI
Sbjct: 1083 RSSSSQLQATLKQLNDDLLAQQQDYAAKESQSSGQRLELASDNELLKQSNVKLEQELKEI 1142

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQIH---QIESQEAMIE 639
            +  ++++ A+   ++T +       +  ++        QE + E
Sbjct: 1143 QDALSKLKAESLEKQTQLTQLEEQSIQKELALGDASRQQENLKE 1186



 Score = 37.9 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 81/277 (29%), Gaps = 14/277 (5%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R   +   +   ++    ++     E +                L+        +  R+ 
Sbjct: 462 RDLDREDAQNQALQLQKNINEQILIEADRWRRLIARHSIR-LADLRREFRGWSGKHERHC 520

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              +++ R+ QL  +   E              +          Q         +K    
Sbjct: 521 ILHSLKARIVQLESQLSEERKKSEELQFSIDEAQFCGDELNAQSQVY------KEKIHDL 574

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E+ +   +   P++              N++L+   + L    + Q+        ++L E
Sbjct: 575 ESKITQLVSATPSLQSIPIPTEDSAALANSQLK--ITELQEKLITQEKLSEARSAEQLEE 632

Query: 544 RG-FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                E +K L  Q+          + ++            L     LL   KEE EKQ 
Sbjct: 633 EQRLRENVKYLQAQIETLQKELVGKDESLEKFSLSQCGIENLRTELALL---KEENEKQA 689

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +  A  E  K       L +V  ++ +++S    +E
Sbjct: 690 REAEAIYEQ-KLQAKSEELQQVTNELQKLKSASDSLE 725


>gi|167535782|ref|XP_001749564.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771956|gb|EDQ85615.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1226

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 51/135 (37%), Gaps = 11/135 (8%)

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
              +   + +  +L   L     E +    E    R         + +L  +V+       
Sbjct: 1017 EHLHRISEDRDQLEQRLKVLQEENEALRLE--RSRGPNAQLQAEVVRLSSEVQQLHRQLD 1074

Query: 566  TTEANIVDVRQGYQQALA----LYKRFRLLSRQ-KEEIEKQIAQVTA----KGEAEKTAI 616
              + +    +Q + +AL     L ++ +LLSR+   + ++++  +      K E + T  
Sbjct: 1075 AAQRSKDQYKQQWTKALHTVAQLRQKEQLLSREHLRQQQRELEHLRLQYLMKEERDVTGN 1134

Query: 617  LISILHEVHIQIHQI 631
             +  + E+  ++ ++
Sbjct: 1135 EMKEIAEIKAELQRL 1149


>gi|149063304|gb|EDM13627.1| restin (Reed-Steinberg cell-expressed intermediate
           filament-associated protein), isoform CRA_a [Rattus
           norvegicus]
          Length = 1205

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 78/261 (29%), Gaps = 15/261 (5%)

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                D R          +   KD  LR      +R RL+        + S         
Sbjct: 483 QRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLESSKPPGDVDMSLSLLQEISA 542

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
            + + +   +    + + +K     +  + +  +         + +E     + + + N 
Sbjct: 543 LQEKLEVTHTDHQNEVTSLKDHFGTREEMFQKEIKALHAATEKLSKENESLRSKLDHANK 602

Query: 514 ELQ---KLWSFLFSDFVEQKYFLPEEIHQRLC------ERGFGELLKQLDRQVRDAGLWS 564
           E      LW       +       EE+              F EL  Q++R   D     
Sbjct: 603 ENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEI 662

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            + ++     R  + + +   K    L +  +E E  +  V A+ +  +       L E+
Sbjct: 663 ESLQSKQDSERSAHAKEMESMKAK--LMKIIKEKEDSLEAVKARLDTAED----QHLVEM 716

Query: 625 HIQIHQIESQEAMIEGFGKMS 645
              + +++  E   E F   S
Sbjct: 717 EEMLSKLQEAEIKKEKFASAS 737


>gi|149032835|gb|EDL87690.1| similar to intracellular protein transport like (XM453) (predicted)
           [Rattus norvegicus]
          Length = 941

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 22/197 (11%)

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPA 496
             + +   +   +      +       + S L KG+    PS REA L   L  +     
Sbjct: 537 RKKMAKIDKEKDRFEHELQKYRSFYGDLDSPLPKGEAGGPPSTREAELKLRLRLVEEEAN 596

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           IL  +  EL        E + L + L     +        +      R   E L +L + 
Sbjct: 597 ILGRKIVELEV------ENRGLKAELDDLRGDDFNGSSNPLM-----REQSESLSELRQH 645

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           ++     +     N+ D+ +  ++  A   +++         +      +   ++ KT  
Sbjct: 646 LQLVEDETELLRRNVADLEEQNKRITAELNKYKY--------KSSGHDSSRHHDSAKTEA 697

Query: 617 LISILHEVHIQIHQIES 633
           L   L    +QI+++  
Sbjct: 698 LQEELKAARLQINELSG 714


>gi|138519820|gb|AAI35569.1| ina protein [Xenopus (Silurana) tropicalis]
 gi|170285099|gb|AAI61014.1| ina protein [Xenopus (Silurana) tropicalis]
          Length = 487

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 97/311 (31%), Gaps = 21/311 (6%)

Query: 326 PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDML 385
             +   YK I       + G    F +               +    +  + +L      
Sbjct: 75  SAVNNEYKIIRTNEKEQLQGLNDRFAMFIE-----KVHNLEQQNKVLETELTALRQRQSE 129

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
             R  E       + RA+LE         I ++       Q ++ + +   +        
Sbjct: 130 PSRLGELYQQEIKELRAQLEELNAEKAQIIIERDNLEDDLQKLKGKYEDEIRMREETEYA 189

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
              + K        +   ++ ++S L +    +K    E   L+ ++    +      EL
Sbjct: 190 LKSHKKDVDDATLARLDLEKKVESLLDEISFLRKVHDEEVTELMAMLQASQV--SVEMEL 247

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
           +     +  L+++ S  +     +     +E ++            +       A   + 
Sbjct: 248 SKPDLTS-ALKEIRSQ-YESLAAKNLQSADEWYK-----------SKFANLTEQASRSTE 294

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
              AN  ++    +Q  +       L    E +E+Q+ ++  +  AE TA L   ++++ 
Sbjct: 295 LIRANREEINDYRRQLQSKTIEIESLRGTNESLERQLQEMEDRHMAE-TAGLQDTINQLE 353

Query: 626 IQIHQIESQEA 636
            ++   + + A
Sbjct: 354 NELRNTKGEMA 364


>gi|154343790|ref|XP_001567839.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065173|emb|CAM40599.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1406

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 67/207 (32%), Gaps = 22/207 (10%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           + L    +++  E   +               P+ RL Q + +  +LS         +  
Sbjct: 763 NELSAAVEQHEAEVEEHEDDLMAAFSDTPATTPASRLEQLASLHDRLSSAADRARRYVAT 822

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                  +L+    +LAD    N ++++L   L +   EQ       +   L        
Sbjct: 823 VQTRRHDVLKRLDCQLAD---ANTKVEQLEDQLAAVQEEQ-----ATLRDTLAREEAERK 874

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
             +++ Q+R A       E      R    Q  A     R L RQK+   + +A      
Sbjct: 875 ALEVEAQLR-AQREKRLAELEQQRERARLAQEAA----ARALERQKKAEREALA------ 923

Query: 610 EAEKTAILISILHEVHIQIHQIESQEA 636
                  L   L EV  ++  + + ++
Sbjct: 924 ---MEEELQRKLREVQSKLRSLHNSDS 947


>gi|119595235|gb|EAW74829.1| nuclear mitotic apparatus protein 1, isoform CRA_g [Homo sapiens]
          Length = 988

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 9/143 (6%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK-QLDRQ 556
           LQ+    L ++     E  K          + +  L   +  + C     E+L+ +L + 
Sbjct: 334 LQQLQDALNEL---TEEHSKATQEWLEKQAQLEKELSAALQDKKCLEEKNEILQGKLSQL 390

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                           +V     Q   L K+     +  +  ++++  V A+G       
Sbjct: 391 EEHLSQLQDNPPQEKGEVLGDVLQVEELSKKLADSDQASKVQQQKLKAVQAQG-----GE 445

Query: 617 LISILHEVHIQIHQIESQEAMIE 639
                  +  Q++++++Q +  E
Sbjct: 446 SQQEAQRLQAQLNELQAQLSQKE 468


>gi|114600684|ref|XP_001151369.1| PREDICTED: retinoic acid induced 14 isoform 2 [Pan troglodytes]
          Length = 1012

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 101/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 626 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 683

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 684 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLIQLTNVSRAKAEDALSEMKSQYSKVLN 743

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 744 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 802

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 803 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 862

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 863 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 900


>gi|14521425|ref|NP_126901.1| chromosome segregation protein [Pyrococcus abyssi GE5]
 gi|18203527|sp|Q9UZC8|RAD50_PYRAB RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|5458643|emb|CAB50131.1| Rad50 purine ntpase [Pyrococcus abyssi GE5]
          Length = 880

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 93/278 (33%), Gaps = 18/278 (6%)

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
           K   +    E        ++ E E++      E ++ E  LK     IK+ + +   ++ 
Sbjct: 287 KDIPKLQEKEKEYRKLKGFRDEYESKLRRLEKELSKWESELKAIEEVIKEGEKKKERAEE 346

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           IR++L ++ ++                  +  +    RL   S  +     +   +E   
Sbjct: 347 IREKLSEIEKRLEELKPYVEELEDAKQVQKQIERLKARLKGLSPGEVIEKLESLEKERTE 406

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           +         ++E    +  +  + NE  K    L     +      E + +   +    
Sbjct: 407 IE------EAIKEITTRIGQMEQEKNERMKAIEELRKAKGKCPVCGRE-LTEEHKKELME 459

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI----- 602
               ++ +   +    +       V++R+   + L  +   R ++ Q +E+E ++     
Sbjct: 460 RYTLEIKKIEEELKRTTEEERKLRVNLRKLEIK-LREFSVMRDIAEQIKELESKLKGFNL 518

Query: 603 -----AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                 +   +G  E+   L   L  +   + +I++ E
Sbjct: 519 EELEQKEREFEGLNEEFNKLKGELLGLERDLKRIKALE 556



 Score = 37.9 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 26/275 (9%), Positives = 85/275 (30%), Gaps = 13/275 (4%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           +++      +      S+  V    +R      F       + +I      +  +D+ +R
Sbjct: 97  YLKVQENGKWRHASEPSMESVSSYIERILPYNVFLNAIYIRQGQIDAILESDETRDKVVR 156

Query: 422 YYY----SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                   ++  + L+++             +  +     +    ++  +   L +    
Sbjct: 157 EILNLDKLESAYENLKRIKTNINLLIESKKSFIARTENIEELIKANEDELTKKLSEINEI 216

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                     L  +  +   L+    ++++++    +L+        + + Q     EE 
Sbjct: 217 SSKLPPIRGELEKVRENVKELESIKGKISELKIQVEKLKG-RKKGLEEKIVQIERSIEEK 275

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             ++ E      L+++ + +                  +   +   L K       + + 
Sbjct: 276 KAKISE------LEEIVKDIPKLQEKEKEYRKLKGFRDEYESKLRRLEKELSKWESELKA 329

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           IE+ I +   K   E+   +   L E+  ++ +++
Sbjct: 330 IEEVIKEGEKK--KERAEEIREKLSEIEKRLEELK 362


>gi|332845669|ref|XP_510917.3| PREDICTED: serine/threonine-protein kinase TAO2 isoform 2 [Pan
           troglodytes]
          Length = 1235

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           +R A+L+   I          ++L+  +    + QK    L S    ++      + + L
Sbjct: 469 IRTASLVSRQIQEHEQDSALREQLSGYKRMRRQHQKQLLALESRLRGEREEHSARLQREL 528

Query: 542 CE--RGFGELLKQLDRQVRDAGLWSATTEANIVD---------VRQGYQQALALYKRFRL 590
                GFG   ++L R+ +  G   A                  ++     L   KR   
Sbjct: 529 EAQRAGFGAEAEKLARRHQAIGEKEARAAQAEERKFQQHILGQQKKELAALLEAQKRTYK 588

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           L  +KE++++++ +  +  + EK       L     Q+ Q +++E
Sbjct: 589 L--RKEQLKEELQENPSTPKREKAE----WLLRQKEQLQQCQAEE 627


>gi|332226528|ref|XP_003262441.1| PREDICTED: girdin isoform 1 [Nomascus leucogenys]
          Length = 1843

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/343 (10%), Positives = 105/343 (30%), Gaps = 46/343 (13%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
           +   +   K ++++   ++   +      +  +D         K   EK I       + 
Sbjct: 497 EKENQRLSKKVEILENEIVQEKQSLQNCQNLSKD-----LMKEKAQLEKTIETLRENSER 551

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
             K   +          +  +    +    +KD            ++  ++  + I E S
Sbjct: 552 QIKILEQENEHLNQTVSSLRQRSQISAEARVKD-----------IEKENKILHESIKETS 600

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                 +   R   ++    +       + +       +E  LL   I +  I+ E+ + 
Sbjct: 601 SKLSKIEFEKRQIKKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKIICEKIEA 660

Query: 505 LA----DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD---RQV 557
           L     ++  +N +L+K      +   + +    E              ++ L     ++
Sbjct: 661 LEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQLDEENLELRRNIESLKCASMKM 720

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS---------------------RQKE 596
               L +   E+    +++G +   A +K+   L                      ++ +
Sbjct: 721 AQLQLENKELESEKEQLKKGLELLKASFKKTERLEVSYQGLDTENQRLQKTLENSNKKIQ 780

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           ++E ++  +  +   +     +  L     ++ Q+E +   +E
Sbjct: 781 QLESELQDLEMEN--QTLQKNLEELKISSKRLEQLEKENKSLE 821



 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 70/230 (30%), Gaps = 17/230 (7%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    +     L+Q   +   +     +  K+  +  + K  +       +   +   K 
Sbjct: 809  RLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENNVKIGNLEKENKT 868

Query: 481  SLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +E  +   + I    + +E  + +     D   L  L   L S          E++  
Sbjct: 869  LSKEIGIYKESCIRLKELEKENKELVKRATIDIKTLVTLREDLVS----------EKLKN 918

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            +       +L  +L++   +        ++      +  +  L    +  L   + +E +
Sbjct: 919  QQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDSRYKLLESKLESTLKKSL---EIKEEK 975

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIEGFGKMSG 646
                +   +        L   L  V      + Q + +E M++    +SG
Sbjct: 976  IAALEARLEESTNYNQQLRQELKTVKKNYEALKQRQDEERMVQSSPPISG 1025


>gi|326923754|ref|XP_003208099.1| PREDICTED: centrosomal protein of 55 kDa-like [Meleagris gallopavo]
          Length = 490

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 78/234 (33%), Gaps = 16/234 (6%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           + +  +QL               ++ A  R   G    L Q S +  +   K    E  L
Sbjct: 196 LSEVEKQLKDALEKNQQWLLYDQQREAYVRGLLGRILELEQRSEIVSQQQPKEFNAEGHL 255

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
                ++  +L+    +L   R    +L+   +     + EQ+      ++  L  + F 
Sbjct: 256 QEKQKHYDQLLENAKSDLEAERCTVIQLKCELNEFKKKY-EQRRQEIVSLNALLQSQHFV 314

Query: 548 EL-------------LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+             ++ L ++     L     +    D+    Q       + +    +
Sbjct: 315 EMKDQENENRIKGEKIQILKQENESIKLQLREEKKKSEDLLSQVQILRKSLLKQQEEHAR 374

Query: 595 KEEIEKQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
              +E+QI   TA  E EK     L   L+++  ++ +   Q   +E   + SG
Sbjct: 375 IALLEQQIQICTADLENEKLDRQNLKHQLNKIFKELFKAREQITRLEPLLQESG 428


>gi|326427567|gb|EGD73137.1| hypothetical protein PTSG_04850 [Salpingoeca sp. ATCC 50818]
          Length = 819

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 75/224 (33%), Gaps = 8/224 (3%)

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           + D+     YS    +             +   R   K +          +       K 
Sbjct: 1   MSDEDDFAQYSSDWSEEGDGHRSPSPRHSTSQPRRKPKRSHTSTSSKSGAKSSSRRTRKR 60

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            +    + +  A L   +++  +   Q QEL        ++Q+               LP
Sbjct: 61  PVQSAGTRQYTAELEDKLHNKDM---QLQELKKEMKVLQDIQRRQEKALDKLEGNDSELP 117

Query: 535 EEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           + + QR  E R   E L++    V          + ++  +R   +Q   L +   L  R
Sbjct: 118 QRLRQRDEEIRSLREQLRKAKDTVHTMKENQRKKDKHLQSIRDKTRQLDQLVQDKGL--R 175

Query: 594 QKEEIEKQIAQVTAK-GEAEKTAILISILHEVHIQIH-QIESQE 635
           ++ E+E ++A +  +  E E+    +    E+  +   ++E QE
Sbjct: 176 ERAELESELAAMKQRVQEQEEEMGRLRRKAELEEKARVRMEQQE 219


>gi|319947314|ref|ZP_08021547.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus australis ATCC 700641]
 gi|319746556|gb|EFV98816.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus australis ATCC 700641]
          Length = 635

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 64/166 (38%), Gaps = 13/166 (7%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +     E       +    L +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQVLELSEEGSTLYLGDYDYYLEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L     +          T  +    +Q  ++   + +R   L  + EE++++I 
Sbjct: 532 KAELEALATAQAETVPVSSTEEFTSNDYHMQKQNQKELRKITRRIEQLEAEMEELDQKIQ 591

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIE-SQEAMIEGFGKMSGRL 648
            +T       +    + L ++  ++ Q+   QE+++E + ++S ++
Sbjct: 592 AITETMH---STNDAADLVQLQSELDQLTVQQESVMEEWAELSEQV 634


>gi|301776200|ref|XP_002923518.1| PREDICTED: LOW QUALITY PROTEIN: huntingtin-interacting protein
           1-like [Ailuropoda melanoleuca]
          Length = 1042

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 72/220 (32%), Gaps = 15/220 (6%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             ++   +F    +             +        Q     S +K +L    +  + A+
Sbjct: 349 FDNKFDDIFGSSFSSDPFNFNSQNGVNKDEKDHLIGQLYRDVSELKAQLENMKTESQRAV 408

Query: 488 LLTLINHPAILQEQYQEL-------ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           L        +  E  ++         D  +   EL +L          Q+     E   +
Sbjct: 409 LQLKGRVSELDAELAEQRHLRQQAADDSEFLRAELDELKKKREDTEKAQRSLTEIERRAQ 468

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E+ + +L ++    V++                +  +Q     +    L R+K+E+E 
Sbjct: 469 ANEQRYSKLKEKYSELVQNHADLLRKN-------AEVTKQVSVARQAQADLEREKKELED 521

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
              +++ + +  KT   + +L  +  ++   + +  +++G
Sbjct: 522 SFQRISDQAQR-KTQEQMEVLESLKQELATSKQELQIVQG 560


>gi|225569241|ref|ZP_03778266.1| hypothetical protein CLOHYLEM_05323 [Clostridium hylemonae DSM
           15053]
 gi|225162040|gb|EEG74659.1| hypothetical protein CLOHYLEM_05323 [Clostridium hylemonae DSM
           15053]
          Length = 887

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 56/160 (35%), Gaps = 15/160 (9%)

Query: 498 LQEQYQELADIRYDNNELQKLW----SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
           L+E+Y+    ++  +  L         ++   F+  K     +    L +     +  +L
Sbjct: 375 LKERYEVFHGVKITDGALVAAATLSDRYISDRFLPDKAIDLVDEACALIKTELDSMPAEL 434

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE- 612
           D   R   +     EA +        +      R   L ++  E+ +Q A   A+ + E 
Sbjct: 435 DELQRKI-MQLEIEEAALKKEEDRLSKD-----RLGHLQQELAELREQFAGKKAQWDNEK 488

Query: 613 ----KTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
               +   +   + +V+ +I + +    + +      GRL
Sbjct: 489 VKVERVQKVREEIEQVNKEIQKAQQSYDLEKAAELQYGRL 528


>gi|242786117|ref|XP_002480740.1| spindle-pole body protein (Pcp1), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218720887|gb|EED20306.1| spindle-pole body protein (Pcp1), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 1243

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 89/286 (31%), Gaps = 14/286 (4%)

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
              D ++F         E+ + ++ P  +    +E           + E+  + K+    
Sbjct: 212 NKLDKENFGLKLKIHYLEEQLKKAGPGYNQAALKENTELKVARITMQQEISRYKKSLHQA 271

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
            +D +      Q +R++ ++       +        +   R        + L        
Sbjct: 272 ERDLEAYRLQLQELREKAKRRQADEAIQREMDYMREEIATREAQVNNLQEELRNVKDKDS 331

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
              ++       L  TL     I+  + +E+  ++ D  +     + L ++    +    
Sbjct: 332 DEVERLRDEIGDLEATLREKDRIIDAKDEEIESLKEDEGQNGNAVAELEAELDRARQQ-L 390

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           EE    + +              R+        E    ++++  ++        + LSRQ
Sbjct: 391 EEFQDHIEKARSDA-----REANRNREQALQQKEKAEENLKELQEEMANKSFSTKGLSRQ 445

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            EE  + + +        +   L    +++       E +E M+EG
Sbjct: 446 LEEKAEDLEK--------ELNQLREEYNDLKEDYALKERREEMLEG 483


>gi|260789468|ref|XP_002589768.1| hypothetical protein BRAFLDRAFT_125877 [Branchiostoma floridae]
 gi|229274951|gb|EEN45779.1| hypothetical protein BRAFLDRAFT_125877 [Branchiostoma floridae]
          Length = 6628

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 76/268 (28%), Gaps = 7/268 (2%)

Query: 365  CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                   + L +E+  L D   K  +E +     +    LE  +    + ++        
Sbjct: 907  TKNVELVQDLQLENKKLQDQN-KSLSEKKEKEHHERVITLETEIVELTSRLEKAAEAERD 965

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             Q     L     +          Y  + A+   +   +  L        +  K     E
Sbjct: 966  LQVKEKELAIFRAEKEHLIKEREVYQIQFAQKEKEVANAASLESEVSSLKEKMKDLKRSE 1025

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              L               QE+ D       LQK    L +   E +    E    R   +
Sbjct: 1026 QEL----AQFQGKFAVIKQEVEDKAKALEALQKEKEGLSNQINEMEGLKKEIAIARNVIQ 1081

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               E  ++     + +   ++  E    +V    ++   + K F    ++ ++   QI  
Sbjct: 1082 ELRESGEKTSEHEKKSKELTSILERTRKEVNILQEEKEEMSKYFASSQKELQDARTQIEL 1141

Query: 605  VTAKGEAEKTAILISILHEVHIQIHQIE 632
            +  +   +          E+  Q+ + +
Sbjct: 1142 LEDE--KQTLNSTSQDATELKTQLEEAK 1167


>gi|194381244|dbj|BAG64190.1| unnamed protein product [Homo sapiens]
          Length = 877

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 20/229 (8%)

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
                 +K+  L       ++ +L +L +    +     +  K+N +  + K  S     
Sbjct: 603 MQLTESLKETDLLRGQLTKVQAKLSELQETS-EQAQSKFKSEKQNRKQLELKVTSLEEEL 661

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           + L   K S + +L E           +  +E+  E+        EL KL   L    V 
Sbjct: 662 TDLRVEKESLEKNLSERK--KKSAQERSQAEEEIDEIRKS--YQEELDKLRQLLKKTRVS 717

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                 E++   L +       +      +   L ++  + ++   ++   Q  A  ++ 
Sbjct: 718 TDQAAAEQL--SLVQAELQTQWE-----AKCEHLLASAKDEHLQQYQEVCAQRDAYQQKL 770

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
             L  +   ++ QI  +T + E          + E+     Q+   EA 
Sbjct: 771 VQLQEKCLALQAQITALTKQNE--------QHIKELEKNKSQMSGVEAA 811


>gi|149176268|ref|ZP_01854883.1| hypothetical protein PM8797T_23264 [Planctomyces maris DSM 8797]
 gi|148844870|gb|EDL59218.1| hypothetical protein PM8797T_23264 [Planctomyces maris DSM 8797]
          Length = 526

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 74/191 (38%), Gaps = 20/191 (10%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLL----TLINHPAILQEQYQELA-DIRYDNNELQKLW 519
           +   S +   +      +R+  +L      LI     L  Q ++L  ++    N L+ L 
Sbjct: 52  QRRVSLIDSAEEKIADLIRQINILKNENLILIRDKDTLDSQIKDLDKELASKKNTLETLQ 111

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
           S L     +Q     E + + L  R    L ++L     +  +     +A    + +  +
Sbjct: 112 SLLAE--TKQVLQTKESMVRHLVSR-IESLYQKLTTAQNELIVLIVKIDAIKEQLEKSEK 168

Query: 580 QALALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAI---------LISILHEVHIQ 627
           +  A      LL ++   +++   +I ++  K +A +  +         L S L E H +
Sbjct: 169 ELTASRLEITLLKKKVASLKEADDRIIKLKQKLDAVQKELVITRKQNTMLESELQEKHKE 228

Query: 628 IHQIESQEAMI 638
           + ++ S+ A++
Sbjct: 229 LDKMSSKNALL 239


>gi|148704364|gb|EDL36311.1| mCG142372 [Mus musculus]
          Length = 1806

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1436 NQIKAEIERKLAEKDEEMEQAKRNHLRMVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1495

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1496 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1555

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1556 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1615

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1616 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1675

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1676 KGGKKQLQKLEARVRELENELEAEQKRNA 1704


>gi|148678484|gb|EDL10431.1| mCG18462 [Mus musculus]
          Length = 1937

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHVRVVETMQSTLDAEIRSRNDALRVKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1624 DLNEM-EIQLNHANRLAAESLRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAI 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828



 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 82/257 (31%), Gaps = 35/257 (13%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
             EN      ++  + E  + N I+ I+D++      Q     LQ   ++   E       
Sbjct: 1072 IENDKQQLDEKLKKKEFEISNLISKIEDEQAVEIQLQKKIKELQARIEELEEEIEAERAS 1131

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
              K  + R         +   L +   +                          ++   +
Sbjct: 1132 RAKAEKQRSDLSRELEEISERLEEAGGATSA-----------------------QVEMNK 1168

Query: 510  YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
                E QKL   L    ++ +        ++       EL +Q+D   R           
Sbjct: 1169 KRETEFQKLRRDLEEATLQHEA--TAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSE 1226

Query: 570  NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI- 628
              +++      A A+ K    L +    +E Q++++ +K   E+   LI+ L     ++ 
Sbjct: 1227 LKMEIDDLSSNAEAIAKAKGNLEKMCRTLEDQVSELKSK--EEEQQRLINELTAQRARLQ 1284

Query: 629  -------HQIESQEAMI 638
                    Q++ ++A++
Sbjct: 1285 TEAGEYSRQLDEKDALV 1301


>gi|114681601|ref|XP_001160753.1| PREDICTED: myosin, heavy polypeptide 7B, cardiac muscle, beta isoform
            3 [Pan troglodytes]
          Length = 1932

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 86/279 (30%), Gaps = 13/279 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
              +  +  +   L   D        N        +A L+   +     ++ +K       
Sbjct: 1562 ELSQVKAEVDRKLAEKDEECANLRRNHQRAVESLQASLDAETRARNEALRLKKKMEGDLN 1621

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS---LR 483
             +  +L    ++     +       +    +  +   QRL      + +  ++ +     
Sbjct: 1622 DLELQLGHATRQATEAQAATRLMQAQLKEEQAGRDEEQRLAAELHEQAQALERRASLLAA 1681

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E   L   +      +   ++  ++      L  L S       ++K    +    +L  
Sbjct: 1682 ELEELRAALEQGERSRRLAEQ--ELLEATERLNLLHSQNTGLLNQKKKLEAD--LAQLSG 1737

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   ++ + + +     +        ++++    +  L +  + L +   E++ ++ 
Sbjct: 1738 EVEEAAQERREAEEKAKKAITDAA-MMAEELKKEQDTSAHLERMKKTLEQTVRELQARLE 1796

Query: 604  QVTAK---GEAEKTAILISILHEVHIQI--HQIESQEAM 637
            +       G  ++   L + + E+  ++   Q +  EA+
Sbjct: 1797 EAEQAALRGGKKQVQKLEAKVRELEAELDAEQKKHAEAL 1835


>gi|114706748|ref|ZP_01439648.1| hypothetical protein FP2506_18069 [Fulvimarina pelagi HTCC2506]
 gi|114537696|gb|EAU40820.1| hypothetical protein FP2506_18069 [Fulvimarina pelagi HTCC2506]
          Length = 890

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/131 (10%), Positives = 41/131 (31%), Gaps = 9/131 (6%)

Query: 505 LADIRYDNNELQKLWSF--LFSDFVEQKYFLPEEIHQRLC---ERGFGELLKQLDRQVRD 559
           L + R+ N   + +     + +        + E +   +    +         L  Q   
Sbjct: 442 LPERRFSNPLARAVVEQRRILALDANSVPRVLE-LLDAVTLHGDTFIESTADYLALQAAR 500

Query: 560 AGLWSATTEANIVDVRQGYQQALALYK--RFRLLSRQKEEIEKQIAQV-TAKGEAEKTAI 616
           + + +A  +  ++       +     +     L  ++  +  +Q+A+        E+   
Sbjct: 501 SRIAAAYNDEGLISAVDFLWEIALGIEDGNLSLAEQRLRDAREQLAEALENGASDEEIDQ 560

Query: 617 LISILHEVHIQ 627
           L+  L E   +
Sbjct: 561 LMQELREAMQE 571


>gi|34532387|dbj|BAC86410.1| unnamed protein product [Homo sapiens]
          Length = 978

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/253 (9%), Positives = 87/253 (34%), Gaps = 4/253 (1%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ +       +E +++E  + +     +++ + +     I D+ +   +K         
Sbjct: 547 RQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHFSQLDMILDQTKTELEKKTNAVKELE 606

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
           +          +    + ++++ L       K +LR+   L  ++    +  E  ++   
Sbjct: 607 KLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTT 664

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
           I+    EL++    +  +  E          +    +     +  LD  +R+        
Sbjct: 665 IKDLTAELRECKMEIEDEKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 724

Query: 568 EANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
              +   + +   +     K+   L+ + +  ++Q+ +        +   +  +  E+  
Sbjct: 725 IIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNE-QEISQLKKEIER 783

Query: 627 QIHQIESQEAMIE 639
              +++  E++++
Sbjct: 784 TQQRMKEMESVMK 796


>gi|30268231|emb|CAD89912.1| hypothetical protein [Homo sapiens]
 gi|117644092|emb|CAL37833.1| hypothetical protein [synthetic construct]
 gi|261861596|dbj|BAI47320.1| filamin A interacting protein 1 [synthetic construct]
          Length = 1177

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 44/364 (12%), Positives = 107/364 (29%), Gaps = 22/364 (6%)

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           +   DV+ + +              +    ++L  L    +L  +             +L
Sbjct: 92  QAREDVIHMLKTEKTKPEVLEAHYGSAEPEKVLRVLHRDAILAQEKSIGEDVYEKPISEL 151

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRETENR 393
                        +L                   E    +    +    D     E E  
Sbjct: 152 DRLEEKQKETYRRMLEQLLL--AEKCHRRTVYELENEKHKHTDYMNKSDDFTNLLEQERE 209

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                 E+ +     K   N  +  KLR    +     L  + ++ +       +  K  
Sbjct: 210 RLKKLLEQEKAYQARKEKENAKRLNKLRDELVKLKSFALMLVDERQMHIEQLGLQSQKVQ 269

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQELADIRYD 511
              +  +   ++L   +    +  +K    E         H A    QE  +  A +   
Sbjct: 270 DLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDF-----EHKASRFSQEHEEMNAKLANQ 324

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
            +  ++L   L       +    EEI++ L +    E L++L  ++      +++  A +
Sbjct: 325 ESHNRQLRLKLVGLTQRIEEL--EEINKNLQKA--EEELQELRDKIAKGECGNSSLMAEV 380

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            ++R+   +     +       Q  E+ K++ +         +  L   + ++  ++ ++
Sbjct: 381 ENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHH-----SKELRLEVEKLQKRMSEL 435

Query: 632 ESQE 635
           E  E
Sbjct: 436 EKLE 439


>gi|118352484|ref|XP_001009513.1| Guanylate-binding protein, N-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|89291280|gb|EAR89268.1| Guanylate-binding protein, N-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 1132

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 44/394 (11%), Positives = 140/394 (35%), Gaps = 32/394 (8%)

Query: 253 GALNYLQKSIRKDVRRNSSSFIIL-VEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLW 311
              N +++ ++   +    + ++  +E   D+  L +     +     T + + + ++  
Sbjct: 219 EQKNRIRRQLKHFFKDRDCATLVRPIEAETDLQRLNEMQNDQLRPEFVTQINQLRKKIFR 278

Query: 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371
           K+ P+I+   +G     +   +     +  +  G   N              +     A 
Sbjct: 279 KIKPKII---NGKALNGQQLVEICKAYIHAINKGTLPNIENAWNYMC-----KNESIKAM 330

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           ++ + E    ++ +  +E    S    D +A++   L                 + +++ 
Sbjct: 331 DECLYEMQNNLEQMMNQEGAISSQQIHDLKAKVREELIKNFKKKSIASE-----EELKEF 385

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ-SSLVKGKLSKKPSLREAALLLT 490
            +QL +++  +   + +  K+  + R Q   S RL +  S +  +        +   L  
Sbjct: 386 YEQLDRQFAEKFRDFKKKNKERLQERFQDMCSDRLKEFESKLNNEEYSNYYEFQKDFL-- 443

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ---RLCERGFG 547
                    +  + +          +K+   ++    E+     +   +   R+ E+ F 
Sbjct: 444 -----EFKDQFERSVGKSPESEEYFKKISESIYRQAAEKVNIKQQRELEKEKRILEQKFQ 498

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----RFRLLSRQKEEIEKQ-- 601
                L  + +         +  I ++ +   Q +A  +    + + ++++++++EKQ  
Sbjct: 499 LSENDLKNKRQSWEDERRELQRKIQELERERAQLMANEQFNQEKIQRITQERDKLEKQYD 558

Query: 602 -IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            + +   + +++ T I    L  +  ++  ++S+
Sbjct: 559 LLQEKYRESQSKLTNISQDQLVSIQKELETVKSE 592


>gi|297665645|ref|XP_002811151.1| PREDICTED: syncoilin-like isoform 2 [Pongo abelii]
          Length = 482

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QA 581
            +   +      E++ Q+L           L    R +  +      +  D+ + Y+ Q 
Sbjct: 294 LAQLRDAYQKQKEQLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQL 353

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           L L +R    ++  ++ + +I ++      E    L +   ++ +Q   +E Q A++
Sbjct: 354 LRLLERKEAGTKALQKTQAEIQEM-----KEALRPLQAEARQLRLQNRNLEDQIALV 405


>gi|224015519|ref|XP_002297411.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220967912|gb|EED86281.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 736

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/147 (10%), Positives = 45/147 (30%), Gaps = 3/147 (2%)

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           + ++   +      + +    N+  + L +                +  +  E    + L
Sbjct: 3   MFHYHVHVSAAAAAVENEALMNDRYRSLVAEQHQLAGVGGGMNAYMLQAQ-QEIIHRQEL 61

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           ++L      +   +A     I +  +   +      R R       E E  +A+   +  
Sbjct: 62  ERLM-LAAGSHPLTAAAALPINNELELLNRRKDELIRLRNTHNHIMEAEL-VARARNQHA 119

Query: 611 AEKTAILISILHEVHIQIHQIESQEAM 637
           + +   L  +L E   +  +++   A 
Sbjct: 120 SAEEMELFILLQEQRHREKELQEMAAA 146


>gi|242778507|ref|XP_002479253.1| nuclear segregation protein (Bfr1), putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218722872|gb|EED22290.1| nuclear segregation protein (Bfr1), putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 499

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 42/123 (34%), Gaps = 8/123 (6%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              +L  L + L +   EQ                  + + +L++QV    +     +  
Sbjct: 89  TQEKLNALDATLKARVAEQN--NSRGKIAFKNVEEIDKEIVRLEKQVDSGNMRLVDEKKA 146

Query: 571 IVDV------RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
           + D+      R+ +       K    L +Q  E++K +    A+  ++K   +   L  +
Sbjct: 147 LSDISSLRKQRKNFAGLDDGQKNIDALKKQIAELKKTLDNPEARALSDKYNEIQQELDSI 206

Query: 625 HIQ 627
             +
Sbjct: 207 KAE 209


>gi|119627021|gb|EAX06616.1| hook homolog 1 (Drosophila), isoform CRA_b [Homo sapiens]
          Length = 517

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/290 (10%), Positives = 90/290 (31%), Gaps = 21/290 (7%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R + +   ++LI       ++    E      +  D             + ++  + 
Sbjct: 227 DDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQ 286

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      +R +++ L +  +          ++  +    +   +   +            
Sbjct: 287 KLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSE 346

Query: 481 SLREAALLLTLIN----HPAILQEQYQELADIRYDNNELQKLW-----SFLFSDFVEQKY 531
           S R   L   +      H A+L+E+ + +          ++L          +       
Sbjct: 347 SKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCSQVQQDHLNQTDASAT 406

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALA------- 583
              E +   +    + E+  +L  + +   L    +E   I ++++  +Q          
Sbjct: 407 KSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELET 466

Query: 584 ----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                 +R R L +Q E+++K + +  +K E E     +++      ++ 
Sbjct: 467 EQRLSKERIRELQQQIEDLQKSLQEQGSKSEGESYKRSMNLKLLFRRKMK 516


>gi|114600688|ref|XP_001151689.1| PREDICTED: ankycorbin isoform 6 [Pan troglodytes]
          Length = 972

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 101/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 586 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 643

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 644 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLIQLTNVSRAKAEDALSEMKSQYSKVLN 703

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 704 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 762

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 763 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 822

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 823 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 860


>gi|325191145|emb|CCA25933.1| putative Ptype ATPase [Albugo laibachii Nc14]
          Length = 3491

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 104/293 (35%), Gaps = 23/293 (7%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P +      +   ++ +  +  L D         ++     +   +    +   + ++++
Sbjct: 1497 PKTEYEQLMEQERKETLQRAQVLKDHSHDTIKLLKTLGARAQAFTIRDQQRLVKDDLEEE 1556

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              R  Y + + + L +L +    +        ++  R  D+    +++ Q    + KL+ 
Sbjct: 1557 SRR--YEEKM-NTLMELERLQGIQREEELHAEQRAKRTGDRLVLEEQIEQRRQQRDKLNV 1613

Query: 479  KPSLREAALLLTL-----------INHPAILQEQYQELADIRYDNNELQ-KLWSFLFSDF 526
            +       L+  +           ++      E   E+      + + + +L      + 
Sbjct: 1614 RTQQEGHDLVAQMKRQQQEQREKDLSRRQHASETLHEIQKFNAQSKQHKMELKRKQQEED 1673

Query: 527  VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             + + +  E+  +   ER   E +K+ + ++R A L +   +       +     L   +
Sbjct: 1674 DKIQRYQREK-DEEAKEREIQEAIKRQETEIRVARLRANQEKMANE---KSEMDELRAKR 1729

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                  RQ  E+E  +A+ T    AE        +  +H+Q  +++  EAM++
Sbjct: 1730 AAEARERQAREVELNLARKTRDDLAELQKA--REIQALHLQGARVQ--EAMLQ 1778


>gi|322488470|emb|CBZ23716.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1155

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 82/230 (35%), Gaps = 17/230 (7%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYIT-----EHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
           +D        Q ++ +L++   +  T     + +    Y  + A+ R ++   +   +  
Sbjct: 573 RDVVQARNRIQELQAKLEERAAQVRTLETEVQGNINLSYEAREAKERVERLQVEYDAERE 632

Query: 471 LVKGKLSKKPSLREAALLLT---LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
               +       ++  +      L+     L    +E A  ++D    Q     L     
Sbjct: 633 SRHRQYEAALEAKDREVQQCRNDLLEVNKKLHALREESASSKFDKQGHQ---QRLTRQLT 689

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALALYK 586
           E++     ++ ++L +    + L+Q      +    S T+ +     VR+  ++     +
Sbjct: 690 EREE-EVAQLRRQLEDS--RQSLEQWKATYDELQQRSGTSTDGYQKAVREREEELQEYRR 746

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
           R R +  +K E+E ++        +       +  +L E   QI ++E +
Sbjct: 747 RLRQVQEEKAELEHRMRAEETARISAIAQGSNVQRVLREREEQIERLERE 796


>gi|256258269|ref|ZP_05463805.1| ClpB, ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Brucella abortus bv. 9 str. C68]
 gi|260884573|ref|ZP_05896187.1| chaperone protein clpB [Brucella abortus bv. 9 str. C68]
 gi|260874101|gb|EEX81170.1| chaperone protein clpB [Brucella abortus bv. 9 str. C68]
          Length = 874

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 79/211 (37%), Gaps = 32/211 (15%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++KY+ + +   R ++           +  +++    K +   K  + ++AL+     
Sbjct: 318 EEYRKYVEKDAALARRFQPVFVDEPTAEDTISILRGLKEKYEQHHKVRVSDSALVAAATL 377

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +    +L   + S                       E+ +++
Sbjct: 378 SNRYITDRFLPDKAIDLVDEAASRLRMQVDS-----------------KPEELDEIDRRI 420

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            +   +       T+A   D             R + + ++  ++E++ A++TAK +AEK
Sbjct: 421 MQLKIEREALKVETDAASKD-------------RLQRIEKELSDLEEESAELTAKWQAEK 467

Query: 614 TAILISILHEVHIQIHQIESQEAMIEGFGKM 644
             + ++   ++  Q+ +  +  A+ +  G+ 
Sbjct: 468 QKLGLAA--DLKRQLEEARNALAIAQRNGEF 496


>gi|195385902|ref|XP_002051643.1| GJ11158 [Drosophila virilis]
 gi|194148100|gb|EDW63798.1| GJ11158 [Drosophila virilis]
          Length = 8387

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 95/302 (31%), Gaps = 19/302 (6%)

Query: 346  NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             +         +    ++         +L   SLP+++       +       D    L 
Sbjct: 7147 LQGRKAFEDSMKKMGDWLNEMETATESELRTTSLPVLEEQLAHYKKLL--QNADNMGGLI 7204

Query: 406  IHLKNCINHI------KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
              +      I       D+       + ++DR  ++ Q      +  G + KK    +++
Sbjct: 7205 NDVSEQGKSILPTLSNADKLKLNDDIKNMKDRYGRIKQTIDDRVNALGDHIKKYKDAKNR 7264

Query: 460  KGPSQRLMQSSLVK-GKLSKKPSLREAALLLTLINHPAILQEQYQ---ELADIRYDN-NE 514
                 + + +   +  +L++    R   +   L  +  IL+E      ++ D++ D+  E
Sbjct: 7265 LAECSQFLGNIQQRMRELNRPIGSRIEDVQDLLGAYEGILKELKDSKHKMGDMQMDDLPE 7324

Query: 515  LQKLW---SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
            LQ +      +     +Q   L + +  R     F  L+ ++   +          E + 
Sbjct: 7325 LQSILTQQDDMIKLIEDQLAHLRQLLMLR---EQFIALINEIIAFIMKYTDVIIDIENSP 7381

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
              +     +   +  + +           +  ++ ++G A     +   L  +  Q+  +
Sbjct: 7382 DSLEDKINKYDDVIVKIQECEGLLASANDKGQKIASEGNAADKNSITEQLQSLKNQLQNL 7441

Query: 632  ES 633
              
Sbjct: 7442 RK 7443


>gi|159111303|ref|XP_001705883.1| Coiled-coil protein [Giardia lamblia ATCC 50803]
 gi|157433974|gb|EDO78209.1| Coiled-coil protein [Giardia lamblia ATCC 50803]
          Length = 2275

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/269 (9%), Positives = 77/269 (28%), Gaps = 28/269 (10%)

Query: 382  VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
                     E  ++   + R        + +  I D  L+   +Q          ++ + 
Sbjct: 1203 YRDAIGFLKEELAYKDHEIRRMRADSAPSEVAQIVDASLKQALAQK---------EEEVA 1253

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL--INHPAILQ 499
                       +   +    P    +++   +         +  A++  +   + P  + 
Sbjct: 1254 RLKSALEDLASDHIGQKTGEPDTAALKALQQEISTKDDEIQKLTAVIAAMPRTHEPQDIT 1313

Query: 500  EQYQEL----ADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRL----CERGFGEL 549
            +  + +    +++  + ++   L   L +   +        +++ + L           L
Sbjct: 1314 DAAELVRILESNLEREKDDTAALRDALRNAEEKNNEQLREIDDLRRELDALRRAAPVEPL 1373

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK- 608
                           A  E  + DV    Q    L ++        E+++  + +V    
Sbjct: 1374 AAAAPADDDLLRSLRADNEMLMEDVHDKRQDIKVLERKLLQAKDVIEDLKDALVRVEPAE 1433

Query: 609  ------GEAEKTAILISILHEVHIQIHQI 631
                  G+AE    L  +L  +  +  ++
Sbjct: 1434 LTAIADGDAEDIGRLQDLLENMKQREKEL 1462



 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/269 (9%), Positives = 77/269 (28%), Gaps = 28/269 (10%)

Query: 382  VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
                     E  ++   + R        + +  I D  L+   +Q          ++ + 
Sbjct: 1520 YRDAIGFLKEELAYKDHEIRRMRADSAPSEVAQIVDASLKQALAQK---------EEEVA 1570

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL--INHPAILQ 499
                       +   +    P    +++   +         +  A++  +   + P  + 
Sbjct: 1571 RLKSALEDLASDHIGQKTGEPDTAALKALQQEISTKDDEIQKLTAVIAAMPRTHEPQDIT 1630

Query: 500  EQYQEL----ADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRL----CERGFGEL 549
            +  + +    +++  + ++   L   L +   +        +++ + L           L
Sbjct: 1631 DAAELVRILESNLEREKDDTAALRDALRNAEEKNNEQLREIDDLRRELDALRRAAPVEPL 1690

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK- 608
                           A  E  + DV    Q    L ++        E+++  + +V    
Sbjct: 1691 AAAAPADDDLLRSLRADNEMLMEDVHDKRQDIKVLERKLLQAKDVIEDLKDALVRVEPAE 1750

Query: 609  ------GEAEKTAILISILHEVHIQIHQI 631
                  G+AE    L  +L  +  +  ++
Sbjct: 1751 LTAIADGDAEDIGRLQDLLENMKQREKEL 1779


>gi|149634646|ref|XP_001514639.1| PREDICTED: similar to p167 [Ornithorhynchus anatinus]
          Length = 1362

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L       +L +    ++ A +     E + + V    + +   ++R     + 
Sbjct: 539 EQIRNQLT--AMSSVLAKALEVIKPAHVLQEKEEQHQLAVTAYVKNSRKEHQRILARRQT 596

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 597 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 638


>gi|148745103|gb|AAI42664.1| TAO kinase 2 [Homo sapiens]
 gi|153217436|gb|AAI51222.1| TAO kinase 2 [Homo sapiens]
          Length = 1235

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           +R A+L+   I          ++L+  +    + QK    L S    ++      + + L
Sbjct: 469 IRTASLVSRQIQEHEQDSALREQLSGYKRMRRQHQKQLLALESRLRGEREEHSARLQREL 528

Query: 542 CE--RGFGELLKQLDRQVRDAGLWSATTEANIVD---------VRQGYQQALALYKRFRL 590
                GFG   ++L R+ +  G   A                  ++     L   KR   
Sbjct: 529 EAQRAGFGAEAEKLARRHQAIGEKEARAAQAEERKFQQHILGQQKKELAALLEAQKRTYK 588

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           L  +KE++++++ +  +  + EK       L     Q+ Q +++E
Sbjct: 589 L--RKEQLKEELQENPSTPKREKAE----WLLRQKEQLQQCQAEE 627


>gi|114600670|ref|XP_001151811.1| PREDICTED: retinoic acid induced 14 isoform 8 [Pan troglodytes]
 gi|114600672|ref|XP_001151880.1| PREDICTED: retinoic acid induced 14 isoform 9 [Pan troglodytes]
 gi|114600674|ref|XP_001151940.1| PREDICTED: retinoic acid induced 14 isoform 10 [Pan troglodytes]
 gi|114600676|ref|XP_001151997.1| PREDICTED: retinoic acid induced 14 isoform 11 [Pan troglodytes]
 gi|114600678|ref|XP_001152066.1| PREDICTED: ankycorbin isoform 12 [Pan troglodytes]
 gi|114600680|ref|XP_001152127.1| PREDICTED: retinoic acid induced 14 isoform 13 [Pan troglodytes]
 gi|114600682|ref|XP_001152186.1| PREDICTED: ankycorbin isoform 14 [Pan troglodytes]
          Length = 980

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 101/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 594 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 651

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 652 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLIQLTNVSRAKAEDALSEMKSQYSKVLN 711

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 712 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 770

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 771 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 830

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 831 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 868


>gi|73971974|ref|XP_538799.2| PREDICTED: similar to ciliary rootlet coiled-coil, rootletin [Canis
           familiaris]
          Length = 1347

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/292 (10%), Positives = 97/292 (33%), Gaps = 25/292 (8%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P + ++ Y       +  +  P   +     +++    + D  + L    +     I+  
Sbjct: 605 PYAGMQAYAYPHTSAVTSQLQPARPLYPTPLSQSHFQGSGDMASFLMTEARQHNTEIQMA 664

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    + D++  L        +      K +A +          M++S++   + +
Sbjct: 665 V------SKVADKMDHL-------MTKVEELQKHSAGNSLMIPSMSVTMETSMIMSNIQR 711

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                E  L   ++   + ++EQ  +++++   N    +  + +            E   
Sbjct: 712 IIQENER-LKQEILEKSSRIEEQNDKISELIERNQRYVEQSNLMMEKRNNSLQTATENTQ 770

Query: 539 QRL--CERGFGELLKQLDRQVRDAGLWSATTEANIV-------DVRQGYQQALALYKRFR 589
            R+   E+   ++ ++L               A+         ++ +  +    L  +  
Sbjct: 771 ARVLHAEQEKAKVTEELAAATAQVSCLQLKVTAHQKKETELQMELTESLKGTELLRGQLA 830

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE--VHIQIHQIESQEAMIE 639
            L  +  E+++   Q  ++ ++EK +     L    +  ++  + +++  +E
Sbjct: 831 KLQAELSELQETSEQAQSRFKSEKQSRRQLELKVTCLEEELADLRAEKESLE 882


>gi|47216078|emb|CAG04817.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1690

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/272 (9%), Positives = 83/272 (30%), Gaps = 18/272 (6%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             ++        K   +S+     L   E +         +  LE+      N   ++++
Sbjct: 194 QQLKASKDGEKFKQERDSVISEYRLIMSERDQVIKEVDRLQTGLEMAEAKLKNTSSERRV 253

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                +A+R R            +     +    + + +           +   +  +  
Sbjct: 254 ANEELEALRQR-WLTETGQFVTKTSCSEKYCHEVKDKAEAQKELSQACKDIEMVREERDV 312

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           + +E      +I    +L+E YQ          ++++    +     +Q   + +E+ + 
Sbjct: 313 ARKERT--EAIIQRDQLLREYYQARQKQDSATLDMERANKEI-DMLRKQCEAISQELKEA 369

Query: 541 LCERGF------------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
           L E                +++ + +             +  + D+    +    + K+ 
Sbjct: 370 LQEAEVAKCRRDWAFQERDKIVAERESIRTLCDNLRRERDRAVSDLADALRNLDDMRKQK 429

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
              +R+ +E+ +++       +  +   L++ 
Sbjct: 430 NDTARELKELREKME--DQLEKEARFRQLMAH 459


>gi|310796686|gb|EFQ32147.1| hypothetical protein GLRG_07291 [Glomerella graminicola M1.001]
          Length = 974

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 72/216 (33%), Gaps = 30/216 (13%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R   +  +  R++Q+ +    +H    R    N + R      +   Q  L + +   + 
Sbjct: 713 RETTAMELA-RIKQMNEGIQKQHDAELR----NLQSRIASLQEEHQRQDDLARRRTESQI 767

Query: 481 SLREAALLLTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           +  E         H   L +  +  A  I +   EL+K            +     ++  
Sbjct: 768 ATLEQ-------QHKRQLDDVQRNAAFRITFLEQELKK---------QADQAEQTAKVQA 811

Query: 540 RLCERGFGELLKQLDRQV-RDAGLWSATTEANIVDVRQGYQQALALYKRFR-----LLSR 593
              +    + L+Q  +    DA       EA++ D++    +      + +      L  
Sbjct: 812 ASQQEEHRKQLEQARKTAESDADRVRHRAEADMADLKATISRLEVDLMKAKKSKAQELQS 871

Query: 594 QKEEIEKQIAQVTA--KGEAEKTAILISILHEVHIQ 627
            +EE+EK++ +  +       +   L   L E+  +
Sbjct: 872 VREELEKRLQEQESFVTKSEARVEQLEKDLREIREK 907


>gi|296223823|ref|XP_002757789.1| PREDICTED: girdin [Callithrix jacchus]
          Length = 1869

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 71/231 (30%), Gaps = 20/231 (8%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    +     L+Q   +   +     +  K+  +  + K  +       +   +   K 
Sbjct: 809  RLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENNVKIGNLEKENKT 868

Query: 481  SLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +E  +   + I    + +E  + +     D   L  L   L S          E++  
Sbjct: 869  LSKEIGICKESCIRLKELEKENKELVKRATIDIKTLVTLREDLVS----------EKLKT 918

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEI 598
            +       +L  +L++   +        ++     +    +  +  K+   +  +    +
Sbjct: 919  QQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDRYKLLESKLESTLKKSLEIKEEKIAAL 978

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIEGFGKMSG 646
            E ++ + T          L   L  V      + Q + +E M++     SG
Sbjct: 979  EARLEESTNYN-----QQLRQELKTVKKNYEALKQRQDEERMVQSSPPTSG 1024



 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 100/334 (29%), Gaps = 30/334 (8%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
           +   +   K ++++   +I   +      +  +D         K   EK I       + 
Sbjct: 497 EKENQRLSKKVEILENEIIQEKQSLQNCQNLSKD-----LMKEKAQLEKTIETLRENSER 551

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
             K   +          +  +    +    +KD            ++  ++  + I E S
Sbjct: 552 QIKILEQENEHLNQTVSSLRQRSQISAEARVKD-----------IEKENKILHESIKETS 600

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                 +   R   ++    +       + +       +E  LL   I +  I  E+ + 
Sbjct: 601 SKLSKIEFEKRQIKKELELYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEA 660

Query: 505 LA----DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           L     ++  +N + +K      +   + +    E              ++ L +     
Sbjct: 661 LEQENSELERENRKFKKTLDSFKNLTFQLESLEKENSQLDEENLELRRNVESL-KCASIK 719

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE------EIEKQIAQVTAKGEAEKT 614
                     +   ++  ++ L L K     + + E      +IE Q  Q   +   +K 
Sbjct: 720 MAQLQLENKELESEKEQLKKGLELLKASFKKTERLEVSYQGLDIENQRLQKALENSNKKI 779

Query: 615 AILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             L S L ++ ++   ++     +E     S RL
Sbjct: 780 QQLESELQDLEMENQTLQKN---LEELKISSKRL 810


>gi|291244257|ref|XP_002742014.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 522

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 53/134 (39%), Gaps = 10/134 (7%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            E+Q+L + L   + +  +       +          + QL +++    +      A   
Sbjct: 217 PEVQELKTELDKMYSKIGHLEDALDTKEEITEQLNNEISQLHQELEKERVTINQLMAEKQ 276

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ----- 627
           ++    +Q  A  +R   L +Q+ E+E+++    +K + +   +  +   E+  +     
Sbjct: 277 ELSASAEQDKAAIRRQ--LEKQRLELEREMHDKLSKAKDDVLNLAKNQAEELQKREEEKN 334

Query: 628 ---IHQIESQEAMI 638
              I Q ++ E+++
Sbjct: 335 KLLIEQKKAAESLM 348


>gi|229056905|ref|ZP_04196301.1| Chaperone protein clpB 1 [Bacillus cereus AH603]
 gi|228720433|gb|EEL72006.1| Chaperone protein clpB 1 [Bacillus cereus AH603]
          Length = 866

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 74/215 (34%), Gaps = 15/215 (6%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI +     R +++          +  +++    + ++    ++ + A++   +   
Sbjct: 322 YRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSD 381

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF--------G 547
             + +++     I   +     + + + S   E        +   + E            
Sbjct: 382 RYISDRFLPDKAIDLVDEACATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKEKDLGSQ 441

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK--QIAQV 605
           E LK L R++ D    +++  A     ++   +   L +    L R  EE E    + + 
Sbjct: 442 ERLKTLQRELSDLKEVASSMRAKWEKEKEDIHKVRDLREHLERLRRALEEAEGNYDLNKA 501

Query: 606 TAK--GEAEKTAILISILHEV---HIQIHQIESQE 635
                G+       +    E+   + Q +++  +E
Sbjct: 502 AELRHGKIPAIEKELKEAEEMGAHNKQENRLLREE 536


>gi|213584990|ref|ZP_03366816.1| hypothetical protein SentesTyph_28645 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 273

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 50/134 (37%), Gaps = 13/134 (9%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE------- 568
           + L   +     +      E   ++   R   + L QL +Q  DA       E       
Sbjct: 52  EALNQEILQVSSQLLDKTREAQQEQERVREIADSLSQLPQQQNDARRQLNEIERRLGAAG 111

Query: 569 --ANIVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEAEKTAILISILH 622
             A +   +    QA +   +  +   +  ++     +++A++ ++   +++  L + L 
Sbjct: 112 GSAALSQAQSLSMQAESAKLKALVDELELAQLSANNRQELARLRSELAEKQSQQLDAYLQ 171

Query: 623 EVHIQIHQIESQEA 636
            +  Q++ +  +EA
Sbjct: 172 ALRNQLNSLRQREA 185


>gi|167747662|ref|ZP_02419789.1| hypothetical protein ANACAC_02383 [Anaerostipes caccae DSM 14662]
 gi|239625026|ref|ZP_04668057.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|167653024|gb|EDR97153.1| hypothetical protein ANACAC_02383 [Anaerostipes caccae DSM 14662]
 gi|239521412|gb|EEQ61278.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 334

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 56/396 (14%), Positives = 107/396 (27%), Gaps = 86/396 (21%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPS------- 52
           M +  + + ++   + + ++  +      R  +     +       HD    S       
Sbjct: 1   MKFTDEEL-EIARSVDLVSIAERQGFTVKRVGSYYTLKE-------HD----SIRIKNRR 48

Query: 53  ----FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE 108
               F                 GD++ FL       F E+V  L   AG        K +
Sbjct: 49  SWLRFSV-PEGQ------DGHNGDNIEFLRQFCYMDFREAVIYLLNEAGYRYEDKSFKDD 101

Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS 168
              K                                 E+  +      F L    D+   
Sbjct: 102 TSRKNHERRKE--------------------------EQNKEQEGKGEFVLPEPNDNYRR 135

Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228
           L  +L +     +++++  +          Y    + ++F  R S G       R     
Sbjct: 136 LYAYLLKTRCLSKEVVDWFVKKKLIYETRRY----HNVVFIGRDSFGTARFASMRGTVDN 191

Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288
                 N  +  + +  K  Y F              VR   +  + + E  +D++S   
Sbjct: 192 YG----NPFKGDVENNDKT-YGFN-------------VRNKKNKEVKVFEAAIDLMSYMD 233

Query: 289 AGVQNVVSSLGTALTEYQLRLLW----KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344
                  + L    T       +        RI L  D D  G +AA     +   ++  
Sbjct: 234 YKRDGQSNKLALGSTWDGALDRFLLENPQIKRISLYLDNDKAGRKAAAL---IRKKYIEM 290

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380
           G  V       G+D + F+    K A  + +  +  
Sbjct: 291 GYHVKVRFPPYGKDWNEFLVAERKKAVIQYLNRNSN 326


>gi|167517563|ref|XP_001743122.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778221|gb|EDQ91836.1| predicted protein [Monosiga brevicollis MX1]
          Length = 2423

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/276 (9%), Positives = 72/276 (26%), Gaps = 10/276 (3%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
                + +   E+  L+  +  +++     N   +  + +  +K       D        
Sbjct: 162 QELAQWLQFQAEADDLMAWIDSKKSAAEDTNYGRDLDQCDALMKRSEAFTNDLAASDNRL 221

Query: 426 QAIRD-RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +  +     L Q +        R    +      K  +    Q      ++       +
Sbjct: 222 DSFSENGFALLEQGHRCADEIKQRIEDVSQAWTTLKENAATRHQKLADARQIHSFNRDAQ 281

Query: 485 AALLLTL------INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             LL         +    I       +  ++  +    +  + L     E      + + 
Sbjct: 282 ELLLRITDKERDGLLSSDISNTDLSGVEALQRKHEVFMRDLAALHESV-EAFVADGQRLA 340

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                +G  ++  +++             +     +R  +      +   RL S +  ++
Sbjct: 341 SSFASQG-ADVRARIEEVQTRWDALDRKAQDRGKALRDAW-DLQRFHSELRLASSRLSDL 398

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           E  I       + +    L+    E   ++   E  
Sbjct: 399 ENIIRADEVAHDVQGAETLLQRHQESQHELRAREET 434


>gi|164423145|ref|XP_958567.2| hypothetical protein NCU09063 [Neurospora crassa OR74A]
 gi|157069967|gb|EAA29331.2| hypothetical protein NCU09063 [Neurospora crassa OR74A]
          Length = 1650

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 84/233 (36%), Gaps = 22/233 (9%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + +  RL+Q+        +   +   +          +QR ++    + + SK    R A
Sbjct: 1016 RELESRLRQIQSMIPQLETKMQKINLEVESSERNLADAQRRIKELSKEQQPSKTDDNRVA 1075

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF-------------------SDF 526
            AL   +      +++  +E++ +    +E++ L   +                       
Sbjct: 1076 ALEKEIAKLEGEVEKLREEMSSVE---DEIKALQDKIMKVGGEKLRSQKAAVDSLKAEIA 1132

Query: 527  VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             + +     E+     E+   +L K  ++  ++       TEA   +++     A +L  
Sbjct: 1133 TQNEETSAAEVKMAKAEKQKHKLEKDFNKASKELQNAIQETEALEEEIQNQGDTAESLTT 1192

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            R        +E +K++A +  + + +   +  +   E+ ++    E+Q+ + E
Sbjct: 1193 RVEEAQEALKEKKKELAAMKKELDEKTAELNETRAVEIEMRNKLEENQKILSE 1245


>gi|149204092|ref|ZP_01881060.1| hypothetical protein RTM1035_11240 [Roseovarius sp. TM1035]
 gi|149142534|gb|EDM30579.1| hypothetical protein RTM1035_11240 [Roseovarius sp. TM1035]
          Length = 672

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 523 FSDFVEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
               +E K    +++   L +R     ++  +  +V           A    +R+   + 
Sbjct: 46  LEAQIEVKRNTLDDLEAELEKRREAMAIVADVQAEVDGLRRQKEELLAEWESLRERRDEV 105

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAK-----GEAEKTAILISILHEVHIQIHQIESQ 634
            A+ +    +  +++++E +IA + A+        EK   L++ +  +  +  +I  Q
Sbjct: 106 AAVRQETEAIVIERQQLESEIAPLRAEYLAVKERLEKAEELLARIDALKREHEEISGQ 163



 Score = 37.2 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +  +G    L+ L+ Q+          EA +   R+       +      L RQKEE+  
Sbjct: 34  VTAQGPLATLEALEAQIEVKRNTLDDLEAELEKRREAMAIVADVQAEVDGLRRQKEELLA 93

Query: 601 QIAQVTAKGEA-----EKTAILISILHEVHIQIHQIESQ 634
           +   +  + +      ++T  ++    ++  +I  + ++
Sbjct: 94  EWESLRERRDEVAAVRQETEAIVIERQQLESEIAPLRAE 132


>gi|146422673|ref|XP_001487272.1| hypothetical protein PGUG_00649 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1302

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 79/288 (27%), Gaps = 10/288 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                R   +    +  + SL      +   TE        E   +   +K     + D  
Sbjct: 788  AEVSRIRKEIEVSQRELSSLEDSLTDYGSVTEQSPIELQREMDRINREMKALRQSVSDNV 847

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
               Y  Q    RL+   +      S   R        +      +  +          ++
Sbjct: 848  ESKYVKQRELARLEGRVKDKKLAISVLERALIDQEHEKVAIDGYEAQVVVLQQSMTEIEQ 907

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIH 538
                +         +   +  + +++   +    N   KL   +       K F      
Sbjct: 908  ELGIQREKRKEEEENLKRITVEIEKVEQEKEAEINRNHKLKDQVSDLLQNIKEFDD---V 964

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA------LALYKRFRLLS 592
             R+        +  ++  +    +     + ++  V +   +A      +     +R L 
Sbjct: 965  DRVKFETVSNDISTINSNIEKLEVEILKIQKDMKMVEKSINEANNLKSQIRDNLDYRRLQ 1024

Query: 593  RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             +  EIE QI  +  +    K         E+ ++I  + S+ A   G
Sbjct: 1025 NEMNEIENQIGMLDIEDAQSKRNEYNERTREIRLEITNLNSEHAGKVG 1072



 Score = 37.2 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 48/149 (32%), Gaps = 6/149 (4%)

Query: 492 INHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           + H  + + +  ++ + ++  +     L   + +     +    E     +  + F E+L
Sbjct: 212 VQHLRVDKSRADKIRSKVQSTSVTCDALSEEIANLTSTIEEKEREAEALFVSNQSFQEIL 271

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            + ++            E  + ++         L  R        +E      Q  A  +
Sbjct: 272 SRHEQLQYSQKSCQVQLERIVKNIEILPDSETVLMSRLDNFESHLQE-----RQAEASMK 326

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
             +   L   L  + ++++ +   E  ++
Sbjct: 327 HNELRALEERLQNLRLELNSLSRTEGSLK 355


>gi|126722647|ref|NP_001075625.1| huntingtin-interacting protein 1-related protein [Oryctolagus
           cuniculus]
 gi|32699406|gb|AAP86641.1| huntingtin interacting protein 1-related [Oryctolagus cuniculus]
          Length = 1068

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 87/267 (32%), Gaps = 30/267 (11%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            ++      +        L++ +  +K +  R  Y   ++ ++  L  +   +     + 
Sbjct: 348 LKDDRDLQIESLKREVEALRSELEKMKLEAQR--YVAQLKGQVNALEAELEEQRKQKQKA 405

Query: 450 WKKNARHR----DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
              N + R      +   Q   +S  ++ +  +K S  E         H A++    + L
Sbjct: 406 LVDNEQLRHELAQLRAAQQEAERSQGLREEAERKASATELRYQKLKEKHSALINTHAELL 465

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI------HQRLCERGFGELLKQLDRQVRD 559
                  +  ++L   +     E+   + E++       +R  E    E   Q+++  R+
Sbjct: 466 RKNA---DTAKQL--TVTQQSQEEGARVKEQLAFQVEQVRRESEMKLEEQSDQVEQLQRE 520

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI-------------EKQIAQVT 606
               +         + +  Q    L  R   LS +K+ +              + +A+  
Sbjct: 521 LQAKTRELRHVQEALSRTEQSGSELSSRLDALSAEKDALSGAVRQREADLLAAQSLARDQ 580

Query: 607 AKGEAEKTAILISILHEVHIQIHQIES 633
               +++         E+  ++ + ES
Sbjct: 581 EAALSQERQRSSQEKQELQGRLAEKES 607


>gi|7274242|gb|AAF44722.1|AF155135_1 novel retinal pigment epithelial cell protein [Homo sapiens]
          Length = 980

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 101/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 594 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 651

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 652 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLN 711

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 712 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 770

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 771 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 830

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 831 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 868


>gi|26353812|dbj|BAC40536.1| unnamed protein product [Mus musculus]
          Length = 987

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 59/150 (39%), Gaps = 11/150 (7%)

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           TL+     +Q++ +EL  I  D   ++K  + L S   EQ                  + 
Sbjct: 96  TLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNAS----------LQQA 145

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
              L     +        +A    ++Q  ++ L   +  + + + + E E++  +  A G
Sbjct: 146 QGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLR-DALG 204

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +A+ +       +E+  Q+ Q++   ++++
Sbjct: 205 KAQSSEEKQQENNELRTQLKQLQDDNSLLK 234


>gi|332971559|gb|EGK10509.1| replicative DNA helicase DnaB [Kingella kingae ATCC 23330]
          Length = 469

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 12/146 (8%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             L      + +  +   E + +++ + +     +      + + L      + +   D 
Sbjct: 38  EALDSVADVVDENDFYRYEHKLIFTAISALGAAGRPADVITVQEMLERNNQLDSVGGFDY 97

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            +  A +  +   A          +  A   R R + RQ  E+  +IA+     + +   
Sbjct: 98  LLTLAQIVPSAANA----------RRYAEIVRERSIMRQLAEVGTEIARKAYNPKGKTAD 147

Query: 616 ILISILHEVHIQIHQIESQEAMIEGF 641
            L+        QI   ES E   +GF
Sbjct: 148 ELLDEAENQVFQIA--ESTEKSKQGF 171


>gi|332865696|ref|XP_519229.3| PREDICTED: myosin-7-like [Pan troglodytes]
          Length = 1930

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 40/123 (32%), Gaps = 3/123 (2%)

Query: 514  ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            EL ++ + +     E++            +R    L   L+ + +         +    D
Sbjct: 1543 ELAQVKADIDRRIHEKEEEFEATRKNH--QRAIESLQASLEAEAKGRAEALRLKKKMETD 1600

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-ILISILHEVHIQIHQIE 632
            + +   Q     K    L +  + +++QI  +  + + +      +   + +  +   + 
Sbjct: 1601 LNEMEIQLDHANKNNSELVKTLKRLQQQIKDLQVQMDEDARQHEELREQYNLQERRLSLL 1660

Query: 633  SQE 635
              E
Sbjct: 1661 QTE 1663


>gi|296916921|gb|ADH84706.1| M protein [Streptococcus pyogenes]
          Length = 338

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 75/230 (32%), Gaps = 17/230 (7%)

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             IKD   R   S  +    +    K  TE        KK    +     S++     L 
Sbjct: 76  KKIKDLTDRDKISSNLLGNAKDQINKLTTEKDTLAEKAKKLEEDKQISDASRKSXSRDLE 135

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-- 530
             + +KK             NH  +  E  +   + +  +   Q L   L +    +K  
Sbjct: 136 ASRAAKKELEA---------NHQKLETEHQKLKEEKQISDAGRQGLSRDLGASREAKKKV 186

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 +     +    + +    RQ     L     EA+    ++          + + 
Sbjct: 187 EADLAALTAEHQKLKEEKQISDASRQGLSRDL-----EASREAKKKVEADLAEANSKLQA 241

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           L +  +E+E+   +++ K +AE  A L +    +  Q+ +   + A +EG
Sbjct: 242 LEKLNKELEEG-KKLSEKEKAELQARLEAEAKALKEQLAKQAEELAKLEG 290


>gi|295110833|emb|CBL24786.1| KaiC. [Ruminococcus obeum A2-162]
          Length = 626

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 28/160 (17%)

Query: 1   MNYPRDFIKDLLIHIPISNLIG----QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN 56
           M Y  + I         ++L+     Q     +                HD         
Sbjct: 3   MQYTEEQI----ARANHTDLVSFLNAQGEQLVKSGREYRWKK-------HD------SVT 45

Query: 57  DSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG------VPLPVVDPKIEKK 110
            S   +Y  S    G  + F+      +F E+V+ L    G       P P  D ++ +K
Sbjct: 46  ISGNRWYRHSQSKGGYPVDFVMEFYYATFPEAVKMLIGEEGEGRQKSCPAPSQDFRLPEK 105

Query: 111 EKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGID 150
            +    +++ +  + +    +L      R   Y +++  +
Sbjct: 106 NEDNEMIVKYLTESREL-EKNLVMEWIARGDIYEEKKHHN 144


>gi|281343788|gb|EFB19372.1| hypothetical protein PANDA_000915 [Ailuropoda melanoleuca]
          Length = 1411

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 47/393 (11%), Positives = 120/393 (30%), Gaps = 32/393 (8%)

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
            AL    + + K+     S      +   DV++L ++ ++  ++S   A+       L  
Sbjct: 562 KALQGATEKLSKENESLKSKLDHANKENSDVIALWKSKLETAIASHQQAM-----EELKV 616

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFE 372
              + V     +   L+   + I L   H I   +          D +         A  
Sbjct: 617 SFSKGVGTETAEFAELKTQIEKIRLDYQHEIENLQNKQ-------DSERSAHAKELEALR 669

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELE---IHLKNCINHIKD-------QKLRY 422
             ++  +   +   +               E+E     L+     +KD          + 
Sbjct: 670 GKLMAVITEKESSLEALKAKLDKAEDQHLVEMEDTLNKLQEAEIKVKDLEVLQAKCSEQT 729

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                   +L+   +K + +     +   +     ++        +  +   ++ K    
Sbjct: 730 KVIDNFTSQLKATEEKLL-DLDALRKASSEGKSEIEKLRQQLEAAEKQIKNLEIEKNTES 788

Query: 483 REAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            +A+ +   +    + L    + L+++      L+K    L   F +             
Sbjct: 789 GKASSITRELQGKELTLNNLQENLSEVSQVKEALEKELQILKDKFADASEEAVSV----- 843

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +R   E + +L ++       S   E    ++     +     +R   L + KE++E  
Sbjct: 844 -QRSMQETVNKLHQKEEQFNALSTELEKLRENLTDMEAKCRERDEREEQLIKAKEKLEND 902

Query: 602 IAQV--TAKGEAEKTAILISILHEVHIQIHQIE 632
           IA++   +   + +   +   L      I +++
Sbjct: 903 IAEIMKMSGDNSSQLTKMNDELRLKERNIEELQ 935


>gi|237804966|ref|YP_002889120.1| putative integral membrane protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273266|emb|CAX10181.1| putative integral membrane protein [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 429

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVD---VRQGYQQALALYKRFRLLSRQKEEI 598
            + G   + + ++++ ++        +  +      R+ + QA   Y     LSR+ +E 
Sbjct: 108 QDEGLKNIRETIEKRQKETDRLKLHNDKLVEQLGQAREVFIQAKGRYDHMEELSRRLKEE 167

Query: 599 EKQIA---QVTAKGEAEKTAILISILHEVHIQIH 629
            +Q+    +   +   EK      +L E+   + 
Sbjct: 168 NQQLQIQLEAAVRERNEKILENQELLQELKETLA 201


>gi|166154831|ref|YP_001654949.1| putative integral membrane protein [Chlamydia trachomatis 434/Bu]
 gi|166155706|ref|YP_001653961.1| putative integral membrane protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336110|ref|ZP_07224354.1| putative integral membrane protein [Chlamydia trachomatis L2tet1]
 gi|165930819|emb|CAP04317.1| putative integral membrane protein [Chlamydia trachomatis 434/Bu]
 gi|165931694|emb|CAP07271.1| putative integral membrane protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 429

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVD---VRQGYQQALALYKRFRLLSRQKEEI 598
            + G   + + ++++ ++        +  +      R+ + QA   Y     LSR+ +E 
Sbjct: 108 QDEGLKNIRETIEKRQKETDRLKLHNDKLVEQLGQAREVFIQAKGRYDHMEELSRRLKEE 167

Query: 599 EKQIA---QVTAKGEAEKTAILISILHEVHIQIH 629
            +Q+    +   +   EK      +L E+   + 
Sbjct: 168 NQQLQMQLEAAVRERNEKILENQELLQELKETLA 201


>gi|332266087|ref|XP_003282047.1| PREDICTED: serine/threonine-protein kinase TAO2 isoform 1 [Nomascus
           leucogenys]
          Length = 1235

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           +R A+L+   I          ++L+  +    + QK    L S    ++      + + L
Sbjct: 469 IRTASLVSRQIQEHEQDSALREQLSGYKRMRRQHQKQLLALESRLRGEREEHSARLQREL 528

Query: 542 CE--RGFGELLKQLDRQVRDAGLWSATTEANIVD---------VRQGYQQALALYKRFRL 590
                GFG   ++L R+ +  G   A                  ++     L   KR   
Sbjct: 529 EAQRAGFGAEAEKLARRHQAIGEKEARAAQAEERKFQQHILGQQKKELAALLEAQKRTYK 588

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           L  +KE++++++ +  +  + EK       L     Q+ Q +++E
Sbjct: 589 L--RKEQLKEELQENPSTPKREKAE----WLLRQKEQLQQCQAEE 627


>gi|317056082|ref|YP_004104549.1| hypothetical protein Rumal_1401 [Ruminococcus albus 7]
 gi|315448351|gb|ADU21915.1| hypothetical protein Rumal_1401 [Ruminococcus albus 7]
          Length = 466

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 9/158 (5%)

Query: 49  KTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKI 107
           K  S   N SK  +Y     + G  + F+    G  F+++VQ L    GV + P+V  K 
Sbjct: 47  KHDSIMINGSK--WYDHKRQIGGGAIKFMQEFYGMDFVQAVQEL---IGVTVSPIVHNKN 101

Query: 108 E---KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD 164
           E   KKEK    L          + + +K    +        +    +  +         
Sbjct: 102 EYVPKKEKKAFILPSKNNTMHRVYAYLIKQRFIRADVITHFAKAGTIYEDDKHHNAVFVG 161

Query: 165 SRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRF 202
              +       K  +        + ++G ++  S+  +
Sbjct: 162 IDEAGVPKQASKRGTSTYGDPFKMTVEGSDTKYSFAHY 199


>gi|303327880|ref|ZP_07358320.1| ATP-dependent chaperone protein ClpB [Desulfovibrio sp. 3_1_syn3]
 gi|302862241|gb|EFL85175.1| ATP-dependent chaperone protein ClpB [Desulfovibrio sp. 3_1_syn3]
          Length = 867

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 48/149 (32%), Gaps = 11/149 (7%)

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +   PA+ + ++Q +        +   +   L   F             R+ +    E
Sbjct: 326 KYIEKDPAL-ERRFQPVLVEEPTVEDAISILRGLKERFEVHHGV-------RISDSAIVE 377

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE---KQIAQV 605
            +    R + D  L     +           +  +L      ++R+  ++E   + + + 
Sbjct: 378 AVVLSHRYITDRQLPDKAIDLIDEAAAMIRTEIDSLPADLDEVNRKVMQLEIEREALRRE 437

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQ 634
           T +   E+   L + L E+  Q   +  Q
Sbjct: 438 TDEASRERLERLENELSELRNQQAAMRKQ 466


>gi|297285538|ref|XP_002802804.1| PREDICTED: sarcolemmal membrane-associated protein [Macaca mulatta]
          Length = 790

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 86/263 (32%), Gaps = 9/263 (3%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
           K+       +    + E +       +   + +           D         A++++L
Sbjct: 322 KVAEGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDFTNERLTALQEKL 381

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
             + + ++T+     +  K+N     +   S  L  S       +    + E  L   L 
Sbjct: 382 --IVEGHLTKAVEETKLSKENQTRAKESDLSDTLSPSKEKSSDDTTDAQMDEQDLNEPLA 439

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV-----EQKYFLPEEIHQRLCERGFG 547
               +  +     ++I     E+Q L   L          +QK F  + + +    + + 
Sbjct: 440 KVSLLKDDLQGAQSEIE-AKQEIQHLRKELIEAQELARTSKQKCFELQALLEE-ERKAYR 497

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             +++  +Q++           +I ++R+     +   +   L +R +  +  Q A+  A
Sbjct: 498 NQVEESTKQIQVLQAQLQRLHIDIENLREEKDSEITSTRDELLSARDEILLLHQAAEKAA 557

Query: 608 KGEAEKTAILISILHEVHIQIHQ 630
                  A L   L +V  ++ +
Sbjct: 558 SERDTDIASLQQELKKVRAELER 580


>gi|256059846|ref|ZP_05450033.1| chaperone clpB [Brucella neotomae 5K33]
 gi|261323815|ref|ZP_05963012.1| chaperone protein clpB [Brucella neotomae 5K33]
 gi|261299795|gb|EEY03292.1| chaperone protein clpB [Brucella neotomae 5K33]
          Length = 874

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                 E+ +++ +   +       T+A   D             R + + ++  ++E++
Sbjct: 409 KPEELDEIDRRIMQLKIEREALKVETDAASKD-------------RLQRIEKELSDLEEE 455

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
            A++TAK +AEK  + ++   ++  Q+ +  +  A+ +  G+ 
Sbjct: 456 SAELTAKWQAEKQKLGLAA--DLKRQLEEARNALAIAQRNGEF 496



 Score = 38.3 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/210 (9%), Positives = 66/210 (31%), Gaps = 14/210 (6%)

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           + ++KY+ + +   R ++           +  +++    K +   K  + ++AL+     
Sbjct: 318 EEYRKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAATL 377

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               + +++     I   +    +L   + S   E        +  ++            
Sbjct: 378 SNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPEELDEIDRRIMQLKIEREALK------ 431

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
                 +       E  + D+ +   +  A ++  +       ++++Q+ +        +
Sbjct: 432 VETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAADLKRQLEEARNALAIAQ 491

Query: 614 TAILISI--------LHEVHIQIHQIESQE 635
                          + ++  Q+   ESQE
Sbjct: 492 RNGEFQKAGELAYGTIPQLEKQLADAESQE 521


>gi|281421289|ref|ZP_06252288.1| ATP-dependent chaperone protein ClpB [Prevotella copri DSM 18205]
 gi|281404824|gb|EFB35504.1| ATP-dependent chaperone protein ClpB [Prevotella copri DSM 18205]
          Length = 838

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 16/143 (11%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSA 565
            I   +    KL         +      +EI + L +     E +K+ + Q +   L   
Sbjct: 389 AIDLMDEAAAKLRME-----RDSVPEELDEITRHLKQLEIEREAIKRENDQPKIQQLDKE 443

Query: 566 TTEANIV--DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI------- 616
             E      D R  ++   AL  + +   ++ E ++ +  ++  +G  E+ A        
Sbjct: 444 IAELKDQEHDFRAKWEGEKALVNKIQQDKQEIENLKFEAERMEREGNYERVAEIRYSKLK 503

Query: 617 -LISILHEVHIQIHQIESQEAMI 638
            L   + ++  Q+   +   AM+
Sbjct: 504 ALEDDIKKIQEQLKSTQGGAAMV 526


>gi|189240963|ref|XP_972394.2| PREDICTED: similar to dynactin [Tribolium castaneum]
 gi|270013807|gb|EFA10255.1| hypothetical protein TcasGA2_TC012455 [Tribolium castaneum]
          Length = 1206

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/137 (7%), Positives = 46/137 (33%), Gaps = 5/137 (3%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           +E+ +EL  ++    +L +  + +       Q+     +   +          +++    
Sbjct: 237 KEKLKELDKLKIQLEQLVEFKTKIMEVQASLQREVQRAKQEAKEAVEAKEAHAEEVADLA 296

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ----VTAKGEAEK 613
               + +   E           +     ++   ++   + ++ ++ +     +A GE   
Sbjct: 297 EAVEMATLDKEMAEEKAETLQLELEVCKEKLEEVTLDLKILKTEMQERAGGTSASGEEAV 356

Query: 614 TAILISILHEVHIQIHQ 630
           +   +  L + + ++ +
Sbjct: 357 STYEVKQLQQQNARLRE 373


>gi|189237841|ref|XP_974666.2| PREDICTED: similar to rho-associated protein kinase 1 [Tribolium
            castaneum]
          Length = 2513

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 93/300 (31%), Gaps = 40/300 (13%)

Query: 357  EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            ED     R +     +   ++     +  +    + ++    +E  E     K       
Sbjct: 1961 EDLFKLKRDWQMEQLQMKELQDSFETEQYFSTLYKTQTNELREELEEKNKINKEFEEECA 2020

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               L++    A+     +   + I E +      +K  +  + K    +       K  +
Sbjct: 2021 S--LKHQCQIALARADSEALARSIAEETIADLEKEKTMKELELKDLLAKHRSEVNSKEVV 2078

Query: 477  SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  RE  L          L ++ +++      N +L++L           +     +
Sbjct: 2079 INSLKDREMELKKM----NEHLSKEREDI------NRQLKQLQEEFSKKSGNNEEID--K 2126

Query: 537  IHQRLCERGF--GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            +  +L        + + +L   +    L     ++ I +          L ++ + L + 
Sbjct: 2127 LKSKLQTESLLKQQAVNKLHEVLNRKDLRETKGKSKISNAD--------LRRKEKDLKKL 2178

Query: 595  KEEI--------------EKQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQEAMI 638
            ++E+              + +I ++T +   E T    L   L     +I Q++ + A I
Sbjct: 2179 QQELSQERDKFNQTISNFQARIQELTVQCNEEITSKQRLQMELDSKDSEIEQLQKKLAAI 2238


>gi|224809478|ref|NP_001138997.1| ankycorbin isoform d [Homo sapiens]
 gi|32481927|gb|AAP84319.1| RAI14 isoform [Homo sapiens]
          Length = 983

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 101/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 597 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 654

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 655 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLN 714

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 715 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 773

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 774 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 833

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 834 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 871


>gi|45505130|ref|NP_057235.2| serine/threonine-protein kinase TAO2 isoform 2 [Homo sapiens]
 gi|116242813|sp|Q9UL54|TAOK2_HUMAN RecName: Full=Serine/threonine-protein kinase TAO2; AltName:
           Full=Kinase from chicken homolog C; Short=hKFC-C;
           AltName: Full=Prostate-derived STE20-like kinase 1;
           Short=PSK-1; AltName: Full=Thousand and one amino acid
           protein 2
 gi|119600369|gb|EAW79963.1| TAO kinase 2, isoform CRA_a [Homo sapiens]
 gi|187957506|gb|AAI36654.1| TAO kinase 2 [Homo sapiens]
 gi|223460882|gb|AAI36656.1| TAO kinase 2 [Homo sapiens]
          Length = 1235

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           +R A+L+   I          ++L+  +    + QK    L S    ++      + + L
Sbjct: 469 IRTASLVSRQIQEHEQDSALREQLSGYKRMRRQHQKQLLALESRLRGEREEHSARLQREL 528

Query: 542 CE--RGFGELLKQLDRQVRDAGLWSATTEANIVD---------VRQGYQQALALYKRFRL 590
                GFG   ++L R+ +  G   A                  ++     L   KR   
Sbjct: 529 EAQRAGFGAEAEKLARRHQAIGEKEARAAQAEERKFQQHILGQQKKELAALLEAQKRTYK 588

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           L  +KE++++++ +  +  + EK       L     Q+ Q +++E
Sbjct: 589 L--RKEQLKEELQENPSTPKREKAE----WLLRQKEQLQQCQAEE 627


>gi|5616074|gb|AAD45616.1|AF061943_1 prostate derived STE20-like kinase PSK [Homo sapiens]
          Length = 1235

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           +R A+L+   I          ++L+  +    + QK    L S    ++      + + L
Sbjct: 469 IRTASLVSRQIQEHEQDSALREQLSGYKRMRRQHQKQLLALESRLRGEREEHSARLQREL 528

Query: 542 CE--RGFGELLKQLDRQVRDAGLWSATTEANIVD---------VRQGYQQALALYKRFRL 590
                GFG   ++L R+ +  G   A                  ++     L   KR   
Sbjct: 529 EAQRAGFGAEAEKLARRHQAIGEKEARAAQAEERKFQQHILGQQKKELAALLEAQKRTYK 588

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           L  +KE++++++ +  +  + EK       L     Q+ Q +++E
Sbjct: 589 L--RKEQLKEELQENPSTPKREKAE----WLLRQKEQLQQCQAEE 627


>gi|332226530|ref|XP_003262442.1| PREDICTED: girdin isoform 2 [Nomascus leucogenys]
          Length = 1870

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/343 (10%), Positives = 105/343 (30%), Gaps = 46/343 (13%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
           +   +   K ++++   ++   +      +  +D         K   EK I       + 
Sbjct: 497 EKENQRLSKKVEILENEIVQEKQSLQNCQNLSKD-----LMKEKAQLEKTIETLRENSER 551

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
             K   +          +  +    +    +KD            ++  ++  + I E S
Sbjct: 552 QIKILEQENEHLNQTVSSLRQRSQISAEARVKD-----------IEKENKILHESIKETS 600

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                 +   R   ++    +       + +       +E  LL   I +  I+ E+ + 
Sbjct: 601 SKLSKIEFEKRQIKKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKIICEKIEA 660

Query: 505 LA----DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD---RQV 557
           L     ++  +N +L+K      +   + +    E              ++ L     ++
Sbjct: 661 LEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQLDEENLELRRNIESLKCASMKM 720

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS---------------------RQKE 596
               L +   E+    +++G +   A +K+   L                      ++ +
Sbjct: 721 AQLQLENKELESEKEQLKKGLELLKASFKKTERLEVSYQGLDTENQRLQKTLENSNKKIQ 780

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           ++E ++  +  +   +     +  L     ++ Q+E +   +E
Sbjct: 781 QLESELQDLEMEN--QTLQKNLEELKISSKRLEQLEKENKSLE 821



 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 72/231 (31%), Gaps = 20/231 (8%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    +     L+Q   +   +     +  K+  +  + K  +       +   +   K 
Sbjct: 809  RLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENNVKIGNLEKENKT 868

Query: 481  SLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +E  +   + I    + +E  + +     D   L  L   L S          E++  
Sbjct: 869  LSKEIGIYKESCIRLKELEKENKELVKRATIDIKTLVTLREDLVS----------EKLKN 918

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEI 598
            +       +L  +L++   +        ++     +    +  +  K+   +  +    +
Sbjct: 919  QQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDRYKLLESKLESTLKKSLEIKEEKIAAL 978

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIEGFGKMSG 646
            E ++ + T          L   L  V      + Q + +E M++    +SG
Sbjct: 979  EARLEESTNYN-----QQLRQELKTVKKNYEALKQRQDEERMVQSSPPISG 1024


>gi|327283929|ref|XP_003226692.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           A-like [Anolis carolinensis]
          Length = 1414

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 2/107 (1%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +     +I  +L        L +    ++   L     E +   V    + +   ++R  
Sbjct: 512 QNMPSAQIRNQLT--AMSSALAKALEVIKPPHLLLEKEEQHQQAVTAYIKNSKKEHQRIL 569

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +  EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 570 ARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616


>gi|326933112|ref|XP_003212653.1| PREDICTED: syncoilin-like [Meleagris gallopavo]
          Length = 535

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 6/118 (5%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QA 581
            S   E      E + QRL      +  + L    R +  + +    +   + + Y+ Q 
Sbjct: 350 LSRLRESCEKEKEALRQRLEAPPCRQDAQYLQESRRLSAEFESLVTRSRRGLEEHYEPQL 409

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           L L +R    +R  +E++ ++      G  E    L   +  + +Q   +E Q  +++
Sbjct: 410 LRLLERREAGTRALQELQGEVQ-----GMKEALRPLQGEVSRLRLQNRSLEEQIVLVK 462


>gi|315641324|ref|ZP_07896400.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Enterococcus italicus DSM 15952]
 gi|315482897|gb|EFU73417.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Enterococcus italicus DSM 15952]
          Length = 645

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/125 (9%), Positives = 45/125 (36%), Gaps = 1/125 (0%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
            ++ + +             +    L ++     L+ L +  ++  +  +  + +    +
Sbjct: 507 NRVATKVVELSENGTRVYLGDYDYYLEKKQEERELQALLQDEQEEEVNPSAGKQSFQLSK 566

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE-SQ 634
           +  +Q     ++   +  Q  ++E  IA    +            L +++ Q+ + + +Q
Sbjct: 567 EQQKQLRQARRKVEQIENQLAKLEDDIANYQTQMADPDILDDHVQLQKLNQQLEEAQEAQ 626

Query: 635 EAMIE 639
             ++E
Sbjct: 627 MTLLE 631


>gi|312864737|ref|ZP_07724968.1| chromosome segregation protein SMC [Streptococcus downei F0415]
 gi|311099864|gb|EFQ58077.1| chromosome segregation protein SMC [Streptococcus downei F0415]
          Length = 1179

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 70/215 (32%), Gaps = 11/215 (5%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + +  + +               +K  +  D +G    L        +       +++ 
Sbjct: 289 ELLEVTRLIADYQRRIEVISLESSQKAEKKADAQGRLADLEGQKQELEEALATKQEQQSQ 348

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNE--LQKLWSFLFSDFVEQKYFL--PEEIHQRLC 542
           L   L +    + +  +E +     N +  ++ L         ++         +   + 
Sbjct: 349 LTQNLADLRQKIADLEKEQSRFS-TNPDQIIESLREEFVGLMQKEADLSNRLTALQADIE 407

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +    +  +  +RQ  +  L     +      ++  ++      + + L    +   +++
Sbjct: 408 QEKTAQAEQSAERQQVEKDL-----DQAKERAQEALEEFQLAQAKVKALLEDYQTQAQEL 462

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            Q+ A    E++  + ++L ++  +  +  S EA+
Sbjct: 463 NQIEANYRQEQSQ-MFALLDQIKEREARQRSLEAI 496


>gi|270009780|gb|EFA06228.1| hypothetical protein TcasGA2_TC009077 [Tribolium castaneum]
          Length = 8629

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 74/234 (31%), Gaps = 25/234 (10%)

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
              + + +  +         T      +  K +     Q     +   +++    + ++  
Sbjct: 7612 QEFQRNLSAKQGTYDHVMKTGKVLKEKAPKSDEPTIRQMMSDLKAKWTAVCNKSVDRQRK 7671

Query: 482  LREAAL--------LLTLINHPAILQEQYQELADIRYDNNELQKL---------WSFLFS 524
            L EA L        +  L+     L++  +EL+     + +L  +         +     
Sbjct: 7672 LEEALLYSGQFKDAIAALLQ---WLKKVEKELSVDSPVHGDLDTVNHLVDLHNQFEKELE 7728

Query: 525  DFVEQKY---FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
               EQ         ++ ++       ++  QL          +  T      + +   +A
Sbjct: 7729 RRNEQMESVIRTGTDLERKANRADATQIRSQLTELNELWNSVTKLTRIRSGRLDEALHEA 7788

Query: 582  LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
              L+K   +L     E E+Q+  V +  E E TA     L  +     +++ +E
Sbjct: 7789 ERLHKSVHMLLDWLSEAERQLRFVGSTPEDEATA--YEQLQALDRFRAELKDKE 7840



 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 41/127 (32%), Gaps = 10/127 (7%)

Query: 519  WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
             + +     E      ++I            L++L R++ +        E       +  
Sbjct: 1197 RNAIRRALNE----DADKIMA--EGDPSDPQLRRLKREMDEVNRLFDEFEKRARAEEESK 1250

Query: 579  QQALALYKRFRLLSRQKEEIEKQIAQ---VTAKGEAEKTAILISILHEVHIQIHQIESQ- 634
             Q     ++   L +  +E E+ I +        + +    L+    E   ++  +E + 
Sbjct: 1251 NQTRIFNQQISNLQQALDEAERIINKRVIAHLPRDIDTLQHLVLEHKEFESRLQNLEPEI 1310

Query: 635  EAMIEGF 641
            E + + F
Sbjct: 1311 EQVKDTF 1317


>gi|221485497|gb|EEE23778.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 420

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 10/121 (8%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR----QGYQ 579
              V  +            E         L+  +R A           ++V     +   
Sbjct: 288 DILVSHRALQRARREATRQEETLRGEEASLEAFIRVASEKREREGQRSLEVLRQRVENQI 347

Query: 580 QALALYKRFRLLSRQKE--EIEKQ----IAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             LA+ +    L RQ+E  E+E++    +A      + E+   L +    V  QI Q+  
Sbjct: 348 AELAVLRVEAALERQREMVELERRRGDLLALALVAEDDEEYLRLSAEEEAVQRQIEQLAE 407

Query: 634 Q 634
           +
Sbjct: 408 E 408


>gi|124001097|ref|XP_001276969.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121918955|gb|EAY23721.1| hypothetical protein TVAG_120590 [Trichomonas vaginalis G3]
          Length = 994

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 98/291 (33%), Gaps = 25/291 (8%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            S I+   +   +KL  E+   +D + ++  EN      + + +L        N ++   
Sbjct: 496 MSEIKQNHEERMKKLDEETQAKIDEMNRKHQENMKRIETEAQEKLSRDSAALKNELE--- 552

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                      R  QL +   T         +K    +  K  ++  +Q    K +   +
Sbjct: 553 ---------SQRQIQLSELKATWKKKINEIKQKIESRQKAKADAEHFLQEETAKRQAKIE 603

Query: 480 PSLREAALLL--TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              +E   L          I +E  ++L  ++ +N E ++           +     +++
Sbjct: 604 QLRQELETLKKNWAEEKEKINKEYSEKLEKLKKENEEAERKAEEQRRLKDAEYQKAIDDL 663

Query: 538 HQRLCERGFGE--LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            ++L +    +  ++  L+++++     +        +  +   Q          L  + 
Sbjct: 664 KKQLNDEEEKKKKIISDLEQKIQQKEKENEEELKRQNEEIEKLTQ--KRQTEIHELELKI 721

Query: 596 EEIEKQIAQVTAKGEAEKTAI---LISILHEVHI----QIHQIESQEAMIE 639
            +++ +  +   + + EK      L     E+      +I +++ Q   I+
Sbjct: 722 NDLKAETNKKVQEIDEEKKKELSKLQQEYDEIKKKGEQEIERLQKQLDQIK 772


>gi|119192064|ref|XP_001246638.1| hypothetical protein CIMG_00409 [Coccidioides immitis RS]
          Length = 1050

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 76/223 (34%), Gaps = 20/223 (8%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           ++Q LR  Y Q  + RL +L Q+ +   + Y R      ++  +    +  +        
Sbjct: 364 QEQLLRDQYQQQTQGRLAELEQENLNARAQYERDQLLLQQYDKRVKDLEEQLNQLNSNYN 423

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           L       +   +  L       + +Y+ LA +        +L           K     
Sbjct: 424 LQNTSKDDQ---IRALQEQVNTWRSKYEALAKL------YSQLRQEHLDLLQTTKSL--- 471

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSAT-TEANIVDVRQGYQQALALYKRFRLLSRQ 594
               +L      E + + +R  R+    +    +      R  +++          L + 
Sbjct: 472 ----KLKAASAQEAIDKRERLEREMKTKNLELADMIRERDRALHEKDRISGGNKEELEKV 527

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           K E+   I +     E  K++ + ++L + + ++  +E  EA+
Sbjct: 528 KRELRLAIERAENA-ERAKSSEISAMLSKYNREMADLE--EAL 567


>gi|74204231|dbj|BAE39876.1| unnamed protein product [Mus musculus]
          Length = 574

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 103/319 (32%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L           +      G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKDRNTKKEGDLLAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|332266089|ref|XP_003282048.1| PREDICTED: serine/threonine-protein kinase TAO2 isoform 2 [Nomascus
           leucogenys]
          Length = 1184

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           +R A+L+   I          ++L+  +    + QK    L S    ++      + + L
Sbjct: 418 IRTASLVSRQIQEHEQDSALREQLSGYKRMRRQHQKQLLALESRLRGEREEHSARLQREL 477

Query: 542 CE--RGFGELLKQLDRQVRDAGLWSATTEANIVD---------VRQGYQQALALYKRFRL 590
                GFG   ++L R+ +  G   A                  ++     L   KR   
Sbjct: 478 EAQRAGFGAEAEKLARRHQAIGEKEARAAQAEERKFQQHILGQQKKELAALLEAQKRTYK 537

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           L  +KE++++++ +  +  + EK       L     Q+ Q +++E
Sbjct: 538 L--RKEQLKEELQENPSTPKREKAE----WLLRQKEQLQQCQAEE 576


>gi|307205459|gb|EFN83791.1| TATA element modulatory factor [Harpegnathos saltator]
          Length = 1394

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 88/252 (34%), Gaps = 16/252 (6%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQAIRDRLQQLFQKYITEHSGY 446
            R +     N   E+ E+   L+     +  Q+L+     + +R + ++      ++    
Sbjct: 851  RLSSQEMSNINAEKDEIIKELREEGEKLSKQQLQHSNIIKKLRLKEKEADATIKSQKEQI 910

Query: 447  GRYWKKNARHRDQKGPSQRLMQSSLVKGK-LSKKPSLREAALLLTLINHPAILQEQYQEL 505
                 +  R +      + + ++ +     L+ K   +E  +L        + ++    L
Sbjct: 911  EEQNTELERLKRSLYAKEEVERTQIEAVHTLTAKTKKQEKEILT-------LQEKLDNAL 963

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG----ELLKQLDRQVRDAG 561
              +      L        S+  ++     EE+ + +   G        ++ L  + R A 
Sbjct: 964  HKMDAYKKSLDA-AKVDLSETKKKLLVTEEELKEAVDNAGESCQLFAQVEDLKVKYRQAE 1022

Query: 562  LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                   ++I   + G+ + + L+ +   L  +  E+ K++ +       E +  +    
Sbjct: 1023 ESHVKRVSHIEYRKLGW-EVIGLHLKEEFLKHENSELLKRL-EAAEARSEELSESVSMAT 1080

Query: 622  HEVHIQIHQIES 633
              +  Q+ Q+++
Sbjct: 1081 KPLLRQLEQLQA 1092


>gi|306825166|ref|ZP_07458508.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432602|gb|EFM35576.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 633

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 55/148 (37%), Gaps = 14/148 (9%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             + +    +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGD-YDYYVD 530

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +     + Q +       +  A++  +    ++  ++A  L ++   L  + EE+E Q  
Sbjct: 531 KKAEMEVSQTEETSTSNQVKEASSVNDYQAQKESQKEARKLMRQIESLEAEIEELETQSQ 590

Query: 604 QVTAK----GEAEKTAILISILHEVHIQ 627
            ++ +     +AEK   L + L ++  +
Sbjct: 591 AISEQMLEINDAEKLMELQAKLDKISRR 618


>gi|259145593|emb|CAY78857.1| Spc110p [Saccharomyces cerevisiae EC1118]
          Length = 944

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 72/218 (33%), Gaps = 12/218 (5%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQ---KGPSQRLMQSSLVKGKLSKKPSLREA 485
             +    F +         R    +   +            M   L + ++ +    +E 
Sbjct: 74  ASQFDDSFPEIKANIPPSPRSGNVDKSRKRNLIDDLKKDVPMSQPLKEQEVREHQMKKER 133

Query: 486 --ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
               L + +     +     ++++     NE++ L   +     E+   L          
Sbjct: 134 FDRALESKLLGKRHITYANSDISNKELYINEIKSLKHEIKELRKEKNDTLNNYDTLEEET 193

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEAN-----IVDVRQGYQQALALYKRFRLLSRQKEEI 598
                 L+ L++++        + + +     I +  Q  ++   L ++ + +  Q  E+
Sbjct: 194 DDLKNRLQALEKELDAKNKIVNSRKVDDHSGCIEEREQMERKLAELERKLKTVKDQVLEL 253

Query: 599 E--KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           E    +  +  + + ++   L++ L+E+     + ++Q
Sbjct: 254 ENNSDVQSLKLRSKEDELKNLMNELNELKSNAEEKDTQ 291


>gi|312109511|ref|YP_003987827.1| peptidase M23 [Geobacillus sp. Y4.1MC1]
 gi|311214612|gb|ADP73216.1| Peptidase M23 [Geobacillus sp. Y4.1MC1]
          Length = 432

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 77/223 (34%), Gaps = 10/223 (4%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + I+++   +      + +   +    + + +  +   + L           ++ S +  
Sbjct: 24  REIQEKRDAINDIRSKQSAVQDKINNADQQIQQLQTQQKSLSAEIKKLDLAVEETSGKIR 83

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
           +L   +      ++   +E+A+++    +  ++         E        +   L  + 
Sbjct: 84  SLSADIQQTEQAVETLKREIAEVQARIEKRNEILKERVRSLQESGGV-ISYLEVLLGSQS 142

Query: 546 FGELLKQLDRQ--VRDAGLWSATTEANIVDVRQGYQQAL-----ALYKRFRLLSRQKEEI 598
           F + + ++     + +A       +     +++  ++ L      L    + L + K+ +
Sbjct: 143 FSDFIDRISAVTTIFEADKQIIREQQADKALKEKKEKELTDKLSRLQADLKELEQLKQTL 202

Query: 599 EKQIAQVTA--KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +QI Q         +K      +  E+  +   ++ QEA ++
Sbjct: 203 NEQINQKNQLMANLKQKEQEHYELKMELAEEQELLKKQEAAVK 245


>gi|225574664|ref|ZP_03783274.1| hypothetical protein RUMHYD_02741 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038132|gb|EEG48378.1| hypothetical protein RUMHYD_02741 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1199

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 73/247 (29%), Gaps = 32/247 (12%)

Query: 425 SQAIRDRLQQLFQKYITEHSGY---GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
            Q  ++ L+   +K   E       G++ +   +        ++  +          +  
Sbjct: 361 LQEGKEELEASQKKLDEEIKKADLDGKWKEYKQQKEAFDTQKKQYERGVQTVQNSLNEVK 420

Query: 482 LREAALLLTLINHPAI-------------LQEQYQELADIRYDNNELQKLWSF------- 521
             +  L +    +  +             L+    +L  ++   ++LQ + +        
Sbjct: 421 KAQEQLTVLQAQYDQLKQAVDGGTLEGEELENAKAQLEQLKVSIDQLQTVVAAKPQLEAK 480

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L     ++      E      ++   +   QLD             E     + +  Q+ 
Sbjct: 481 LTELEKQKPALDAAEAQLADGKKQLEDAQAQLDAAQEKIDAGKKELEQGEAQIEEAVQKL 540

Query: 582 L-------ALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIE 632
           L       A   +     RQ E+ +++I +   K +   E+       L E    +   E
Sbjct: 541 LSTQQTLKASQSQISDSERQLEDGQREIDENEQKLKEAQEEIDENEQKLIEAEQDLKDGE 600

Query: 633 SQEAMIE 639
           S+ A  E
Sbjct: 601 SELADGE 607


>gi|190573842|ref|YP_001971687.1| putative tail length phage protein [Stenotrophomonas maltophilia
           K279a]
 gi|190011764|emb|CAQ45384.1| putative tail length phage protein [Stenotrophomonas maltophilia
           K279a]
          Length = 898

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 85/309 (27%), Gaps = 26/309 (8%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DP+   R     A          L+      E          ++  L+  L++ +     
Sbjct: 345 DPELLQRMTRPRAAPDTRGAQTSLIKAQLDAELALLKDALTRQQTALDAALEDRLIS--- 401

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM---------- 467
             +R YY+Q      ++L  +   +     R  +     + +    +             
Sbjct: 402 --VRDYYAQKTALEQRELDAEIARKQQELARSQQMAVGGKSENERLKAKAEVAKAEAELI 459

Query: 468 ----QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
               + S ++   ++K +  E  L   L      L +      D        +  +  L 
Sbjct: 460 VLNNRRSDIEQANARKAAQAERELADALAQAREELAQITGTATDADRQAAIARS-YRDLR 518

Query: 524 SDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           S    + Y     +  RL +       L        + +       EA  +  + G    
Sbjct: 519 SRLAAESYADGVALVDRLIDVKAAQANLTALEAAWRQVSERLRNAQEAIGIQQQAGLLSE 578

Query: 582 LALYKRFRLLSRQ----KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
               ++   L +Q     + +   + Q       +    + +  +E+      ++    +
Sbjct: 579 AQARQQIVTLQQQSATEMQHLLPAMQQAAVAIGPDAVLRVQAWQNELARTRLVVDEMAPL 638

Query: 638 IEGFGKMSG 646
               G+  G
Sbjct: 639 WNRLGESFG 647


>gi|151942329|gb|EDN60685.1| spindle pole body component [Saccharomyces cerevisiae YJM789]
          Length = 944

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 72/218 (33%), Gaps = 12/218 (5%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQ---KGPSQRLMQSSLVKGKLSKKPSLREA 485
             +    F +         R    +   +            M   L + ++ +    +E 
Sbjct: 74  ASQFDDSFPEIKANIPPSPRSGNVDKSRKRNLIDDLKKDVPMSQPLKEQEVREHQMKKER 133

Query: 486 --ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
               L + +     +     ++++     NE++ L   +     E+   L          
Sbjct: 134 FDRALESKLLGKRHITYANSDISNKELYINEIKSLKHEIKELRKEKNDTLNNYDTLEEET 193

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEAN-----IVDVRQGYQQALALYKRFRLLSRQKEEI 598
                 L+ L++++        + + +     I +  Q  ++   L ++ + +  Q  E+
Sbjct: 194 DDLKNRLQALEKELDAKNKIVNSRKVDDHSGCIEEREQMERKLAELERKLKTVKDQVLEL 253

Query: 599 E--KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           E    +  +  + + ++   L++ L+E+     + ++Q
Sbjct: 254 ENNSDVQSLKLRSKEDELKNLMNELNELKSNAEEKDTQ 291


>gi|153807767|ref|ZP_01960435.1| hypothetical protein BACCAC_02050 [Bacteroides caccae ATCC 43185]
 gi|149129376|gb|EDM20590.1| hypothetical protein BACCAC_02050 [Bacteroides caccae ATCC 43185]
          Length = 862

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/212 (9%), Positives = 66/212 (31%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++           +  +++    + +      +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVQVDEPDNLSTISILRGLKERYENHHHVRIKDDAIIAAVELSS 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      +     +          +   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDKPKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           ++    L            +  +Q    L  + +    + E ++ +  +   +G+  K  
Sbjct: 437 EIIGKELAELKE--LEKSFKAKWQSEKTLMDKIQQNKVEIENLKFEAEKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L   + +   ++  ++  +AMI+
Sbjct: 495 EIRYGKLQALDKEIEDTQKKLRDMQGDKAMIK 526


>gi|13278786|gb|AAH04165.1| NUMA1 protein [Homo sapiens]
 gi|119595232|gb|EAW74826.1| nuclear mitotic apparatus protein 1, isoform CRA_e [Homo sapiens]
          Length = 979

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 9/143 (6%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK-QLDRQ 556
           LQ+    L ++     E  K          + +  L   +  + C     E+L+ +L + 
Sbjct: 334 LQQLQDALNEL---TEEHSKATQEWLEKQAQLEKELSAALQDKKCLEEKNEILQGKLSQL 390

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                           +V     Q   L K+     +  +  ++++  V A+G       
Sbjct: 391 EEHLSQLQDNPPQEKGEVLGDVLQVEELSKKLADSDQASKVQQQKLKAVQAQG-----GE 445

Query: 617 LISILHEVHIQIHQIESQEAMIE 639
                  +  Q++++++Q +  E
Sbjct: 446 SQQEAQRLQAQLNELQAQLSQKE 468


>gi|328945555|gb|EGG39706.1| DNA repair protein RecN [Streptococcus sanguinis SK1087]
          Length = 552

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 83/242 (34%), Gaps = 36/242 (14%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ----KGPSQRLMQSSLVKGKLSKKPSLR 483
           ++ R Q+ F +Y +         K    H+ +    +     +  ++L  G+ +     R
Sbjct: 157 LKGRYQETFDRYRSLRKQVLTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQER 216

Query: 484 EAAL-----------LLTLINHPAI-----LQEQYQELADIRYDNNELQKLWSFLFSDFV 527
           +  L             T++++        ++    +L  I   +   ++L   L   + 
Sbjct: 217 DRLLNHKLIADTLTNAYTMLDNEDFSSLANVRSAMNDLESIEDYDPAYKELSGSLSESYY 276

Query: 528 EQKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY- 585
             +      +   L    F  E L Q++ ++      +      + DV   + Q    Y 
Sbjct: 277 VLEDVSK-RLEDILDGLDFDGERLLQVESRLDLINSITRKYGGQVDDVLDYFAQISKEYS 335

Query: 586 -------------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
                        +  + L R+  E+ ++++Q      A+  A +   L +++++  + +
Sbjct: 336 LLTGSNLSSEDMDRELKALERELVELAQELSQARHDLAAQLEAEIKQELQDLYMEKARFK 395

Query: 633 SQ 634
            Q
Sbjct: 396 VQ 397


>gi|317010545|gb|ADU84292.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Helicobacter
           pylori SouthAfrica7]
          Length = 856

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 98/281 (34%), Gaps = 28/281 (9%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R   K     L+ + +  +D+              +   ++   +K   N I        
Sbjct: 220 RIVNKEVPTTLLNKRVIALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVI-------L 272

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +              + +  +    K          
Sbjct: 273 FIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYFEKD------MAL 326

Query: 484 EAALLLTLINHPAI---------LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +      L+N P+I         L+E  +   +I  +++ L    + L S ++  ++   
Sbjct: 327 QRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALVA-SAKLSSRYITDRFLPD 385

Query: 535 EEIHQRLCERGFGELLKQLDRQ-VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           + I   L + G  +L  Q++ +  + + +  +     +       ++  + +KR + + +
Sbjct: 386 KAI--DLIDEGAAQLKMQMESEPAKLSSIKRSIQRLEMEKQALEMEKKESNHKRMQEILK 443

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +  +++++  ++ A+ E EK   +   +  + +++  ++ +
Sbjct: 444 ELSDLKEEKIKLEAQFENEK--EVFKEISRLKMEMENLKKE 482


>gi|293351598|ref|XP_001080189.2| PREDICTED: myosin heavy polypeptide 13 [Rattus norvegicus]
          Length = 1903

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/268 (10%), Positives = 85/268 (31%), Gaps = 17/268 (6%)

Query: 376  VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             +    +D     + E       + +  +E         I+ +       + +   L ++
Sbjct: 1535 SQVKSELDRKVTEKDEEIEQIKRNSQRAVEAMQSVLDAEIRSRNDALRLKKKMEGDLNEM 1594

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
              +    +       K     + Q   SQ  +  +           L+E   L  +    
Sbjct: 1595 EIQLSHANRQVAETQKHLRTVQGQLKDSQLHLDDAQ-----RSNEDLKEQ--LAIVERRN 1647

Query: 496  AILQEQYQELADIRYDNNELQKL-WSFLFS-----DFVEQKYFLPEEIHQRLCERGFGEL 549
             +LQE+ +E+          ++L    L         +  +        ++L E    + 
Sbjct: 1648 GLLQEELEEMKVALEQTERTRRLSEQELLDSSDRVQLLHSQNTSLINTKKKL-EADLAQC 1706

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
              +++  ++++       +  I D     ++          L R K+ +E+ +  +  + 
Sbjct: 1707 QAEVENSIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRL 1766

Query: 610  EAEKTAIL---ISILHEVHIQIHQIESQ 634
            +  +   L      + ++  ++ ++ES+
Sbjct: 1767 DEAEQLALKGGKKQIQKLEARVRELESE 1794


>gi|269105116|ref|ZP_06157811.1| IncF plasmid conjugative transfer DNA-nicking and unwinding protein
            TraI [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268160751|gb|EEZ39249.1| IncF plasmid conjugative transfer DNA-nicking and unwinding protein
            TraI [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 1975

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 14/99 (14%)

Query: 59   KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118
            +G+Y  ++   KG+ ++ + +    SF E+V   A      L   +     + +    L+
Sbjct: 1613 RGYYRDWTTGDKGNLINLIMSAKSFSFKEAVNF-AEQI---LTEPENHNLIENEKHDKLV 1668

Query: 119  RLI--------EVATDFFHH--SLKNARDKRLHYYLDER 147
              +          A ++F     LK              
Sbjct: 1669 NTLPKHVGNLKARAINYFEQGVELKETIANTYINNQTYH 1707


>gi|260779191|ref|ZP_05888083.1| chromosome partition protein MukB [Vibrio coralliilyticus ATCC
            BAA-450]
 gi|260605355|gb|EEX31650.1| chromosome partition protein MukB [Vibrio coralliilyticus ATCC
            BAA-450]
          Length = 1486

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 41/147 (27%), Gaps = 2/147 (1%)

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL-CE 543
              +   L   P        E         EL+K    L      + +F   +    L   
Sbjct: 925  EKIASALEADPEQFDALEAEYKAADIQLQELKKQIFALSDLVERRHHFAYSDSVDLLNKS 984

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEIEKQI 602
                E LK    +V      S             Y Q LA  K      ++  +E ++++
Sbjct: 985  SELSEQLKAKLVEVERHRTRSRDELKQSQGQMNQYNQVLASLKSSHQAKQETVQEFKQEL 1044

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIH 629
             +     +       +    E+  ++H
Sbjct: 1045 QEFGVTADEGAQERAMRRRDELQERLH 1071


>gi|197215641|gb|ACH53033.1| centrosome-associated protein CEP250 (predicted) [Otolemur garnettii]
          Length = 2316

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 98/281 (34%), Gaps = 13/281 (4%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            S+ +     A E L  E + L   L ++E E  +     E    +     C   ++ +K 
Sbjct: 867  SWHQQELAKALENLEREKMDLEMRLREQEKEIEAIQAQREEERTQAQSALCQMQLETEKE 926

Query: 421  RYYYSQAIRDRLQQL------FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
            R    + +    ++L       ++   +        ++       +    +       + 
Sbjct: 927  RVSLLETLLQTQKELADASQQLERLRQDMKVQKLKEQETTGMLQTQLQEAQQALKEAAQQ 986

Query: 475  KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFL 533
                  +LRE +   TL+ +   LQ+Q ++L       ++ Q+L    +     E + + 
Sbjct: 987  HREDLAALREES--GTLLQNKIDLQKQVEDLKSQLVAQDDSQRLIEQEVQEKLREAQEYS 1044

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
               I + L        L  ++++ R   L  A +     ++    Q         + LS 
Sbjct: 1045 R--IQKELETEKASLTLSLVEKEQRLLVLQEADS-IREQELSALRQDMQEAQGGQKELSA 1101

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            Q E + +++ +  A   A++ A L+  L    I   Q+ + 
Sbjct: 1102 QVELLRQEVKEKEADFLAQE-ARLLEELEASQITEQQLRAS 1141


>gi|281356823|ref|ZP_06243314.1| Chromosome segregation ATPase-like protein [Victivallis vadensis
           ATCC BAA-548]
 gi|281316950|gb|EFB00973.1| Chromosome segregation ATPase-like protein [Victivallis vadensis
           ATCC BAA-548]
          Length = 925

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 90/262 (34%), Gaps = 46/262 (17%)

Query: 417 DQKLRYYYSQ--AIRDRL---QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
               R  Y +  A+R++L   Q   +     H       ++  R  D K  + +    S 
Sbjct: 517 SDADRELYKEIAALREKLAGHQAELEAVKAAHERDIAALEEQYRELDAKYQADKAELDSR 576

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--------- 522
           +    +    LRE        +   +   + +     +  N E++ L+  L         
Sbjct: 577 IADIETDIVGLREK-------HEADVAAIRAEIDEAAQGLNEEIKTLYQELAAQKEAMEI 629

Query: 523 --------FSDFVEQKYFLPEEIHQRL------------CERGFGELLKQLDRQVRDAGL 562
                        +Q   L E I++RL             +    EL K+ +++VR+   
Sbjct: 630 HKQEVVQAIDRIQQQISLLDEAINERLANLENRIRYSVYSDERLAELKKEYEQKVREKEA 689

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT----AKGEAEKTAILI 618
             A  +  I   +   Q    L ++      + E++  ++  +      + +  + A+  
Sbjct: 690 EIAALDIEIRKQQAAGQDVALLLEQRNQALTELEKLRNELKDIEFAIVIRNDESEFAVHE 749

Query: 619 SILHEVHIQIHQIES-QEAMIE 639
           + + ++  ++  + +  +A+I+
Sbjct: 750 AEILQLKKELAALRNSTDALIK 771


>gi|114654489|ref|XP_001148513.1| PREDICTED: Golgi autoantigen, golgin subfamily a, 5 isoform 1 [Pan
           troglodytes]
          Length = 674

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 78/269 (28%), Gaps = 25/269 (9%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK----LRYYYSQAIRDRLQ 433
           +      + K   +            LE         ++DQ     L+    Q +++RL 
Sbjct: 296 AKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTLQERLH 355

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           +       E   Y +   + A          RL +  + +  L++  +L E         
Sbjct: 356 EADATLKREQESYKQMQSEFA---------ARLNKVEMERQNLAEAITLAER-------K 399

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLK 551
           +    +   +    ++     L+     L     +        E++   L E    E L 
Sbjct: 400 YSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLD 459

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610
                  +        E    ++++   Q   L    + +  +Q  E E    Q+    +
Sbjct: 460 SSTANSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHD 519

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639
                       E+  ++ +++ +   IE
Sbjct: 520 QIAGQKASK--QELETELERLKQEFHYIE 546


>gi|6808064|emb|CAB70882.1| hypothetical protein [Homo sapiens]
 gi|119600371|gb|EAW79965.1| TAO kinase 2, isoform CRA_c [Homo sapiens]
          Length = 1062

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           +R A+L+   I          ++L+  +    + QK    L S    ++      + + L
Sbjct: 296 IRTASLVSRQIQEHEQDSALREQLSGYKRMRRQHQKQLLALESRLRGEREEHSARLQREL 355

Query: 542 CE--RGFGELLKQLDRQVRDAGLWSATTEANIVD---------VRQGYQQALALYKRFRL 590
                GFG   ++L R+ +  G   A                  ++     L   KR   
Sbjct: 356 EAQRAGFGAEAEKLARRHQAIGEKEARAAQAEERKFQQHILGQQKKELAALLEAQKRTYK 415

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           L  +KE++++++ +  +  + EK       L     Q+ Q +++E
Sbjct: 416 L--RKEQLKEELQENPSTPKREKAE----WLLRQKEQLQQCQAEE 454


>gi|32879817|gb|AAP88739.1| nuclear mitotic apparatus protein 1 [synthetic construct]
          Length = 980

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 9/143 (6%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK-QLDRQ 556
           LQ+    L ++     E  K          + +  L   +  + C     E+L+ +L + 
Sbjct: 334 LQQLQDALNEL---TEEHSKATQEWLEKQAQLEKELSAALQDKKCLEEKNEILQGKLSQL 390

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                           +V     Q   L K+     +  +  ++++  V A+G       
Sbjct: 391 EEHLSQLQDNPPQEKGEVLGDVLQVEELSKKLADSDQASKVQQQKLKAVQAQG-----GE 445

Query: 617 LISILHEVHIQIHQIESQEAMIE 639
                  +  Q++++++Q +  E
Sbjct: 446 SQQEAQRLQAQLNELQAQLSQKE 468


>gi|77464303|ref|YP_353807.1| hypothetical protein RSP_0730 [Rhodobacter sphaeroides 2.4.1]
 gi|77388721|gb|ABA79906.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 834

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 69/228 (30%), Gaps = 21/228 (9%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            + L+ +               +        +    R  Q         +     E A L
Sbjct: 402 AEPLKVVLPGRRFFDPLAAALIEMRRDLLWNRTNGPRTAQILHAVTHAPEGLFRNERAFL 461

Query: 489 LTLINHPAI-----------LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            T +    +             E  ++L +I     E   L S L +    Q        
Sbjct: 462 RTRVLMRKLDAEAATLAPAARDEIAEQLWEIALMVEE-GDLASALEALRRAQDRLDEA-- 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +      + ++QL +++R A       E      R   QQ     +   +   Q +E
Sbjct: 519 ---IRNGASQDEIEQLMQEMRQALDNYMR-ELAEEAQRNPDQQQAENRQTMEMSGDQLQE 574

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +  ++ ++  +G   + A L+ ++ ++   +  ++      +G G  S
Sbjct: 575 MLDKLQELMEQGRMAEAAELMEMMRQL---MENMQVTMGEGQGQGPGS 619


>gi|116511553|ref|YP_808769.1| primary replicative DNA helicase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116107207|gb|ABJ72347.1| primary replicative DNA helicase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 455

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 7/152 (4%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K   +    E A+L  +      L E  + L+   +  N  + ++  +      ++    
Sbjct: 8   KAPPQDLDAEQAVLGAVFLDSERLVEIKEFLSSDDFYKNAHKIIFRTMEKLSDAREAIDV 67

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             I   L  +G      +L+     A +    T          Y + +A     R L  +
Sbjct: 68  LTIRSHLENQG------ELEAIGGIAYIAELATATPTAANAAYYAKIVAEKSLLRQLINR 121

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
             E  ++  +  +  + +  A     L +V  
Sbjct: 122 LTESVEKAYEQDSPAD-DILAQAEKSLIDVQQ 152


>gi|332809533|ref|XP_003308265.1| PREDICTED: coiled-coil domain-containing protein 18 [Pan troglodytes]
          Length = 1299

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/253 (9%), Positives = 85/253 (33%), Gaps = 4/253 (1%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            R+ +       +E +++E  + +     +++ +       I D+ +   +K         
Sbjct: 868  RQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELE 927

Query: 448  RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            +          +    + ++++ L       K +LR+   L  ++    +  E  ++   
Sbjct: 928  KLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTT 985

Query: 508  IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            I+    EL++    +     E          +    +     +  LD  +R+        
Sbjct: 986  IKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1045

Query: 568  EANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
               +   + +   +     K+   L+ + +  ++++ +        +   +  +  E+  
Sbjct: 1046 IIKLEGTLEKSELELKECNKQIESLNDKLQNAKEELREKEFIMLQNE-QEISQLKKEIER 1104

Query: 627  QIHQIESQEAMIE 639
               +++  E++++
Sbjct: 1105 TQQRMKEMESVMK 1117


>gi|307105225|gb|EFN53475.1| hypothetical protein CHLNCDRAFT_53751 [Chlorella variabilis]
          Length = 308

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 48/135 (35%), Gaps = 8/135 (5%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            E+ +L   L +     +         +L  R     L  L++  +         +    
Sbjct: 106 QEIARLRHDLLTCQARVREQDR-----QLRNRDAE--LAALEQVYKQQQQQQQVYQQQQQ 158

Query: 573 DVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            +RQ +   + L ++    L +Q    +++  +  A    ++   L++ + ++  Q+   
Sbjct: 159 QLRQHHDDLVQLLQQHNDDLVKQLRHQKRKRDEDEAAAATKEELELLNRVQDLQRQLAAC 218

Query: 632 ESQEAMIEGFGKMSG 646
            ++ A     G  SG
Sbjct: 219 RAELAQRRLSGAGSG 233


>gi|303260931|ref|ZP_07346880.1| surface protein A [Streptococcus pneumoniae SP14-BS292]
 gi|303269626|ref|ZP_07355385.1| surface protein A [Streptococcus pneumoniae BS458]
 gi|301801083|emb|CBW33751.1| pspA [Streptococcus pneumoniae INV200]
 gi|302637768|gb|EFL68254.1| surface protein A [Streptococcus pneumoniae SP14-BS292]
 gi|302640828|gb|EFL71216.1| surface protein A [Streptococcus pneumoniae BS458]
          Length = 609

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           ++   E  K+      +          +  ++++  ++A     +   L+++ EE EK++
Sbjct: 116 QKEMEEAEKKHKNAKAEFDKVRGKVIPSAEELKETRRKAEEAKAKEAELTKKVEEAEKKV 175

Query: 603 AQVTAKGEAEKTAI--LISILHEVHIQIHQIESQEAMIE 639
            +   K +AE+     L + + E+  Q+H++E++   I+
Sbjct: 176 TEAKQKLDAERAKEVALQAKIAELENQVHRLETELKEID 214


>gi|301621124|ref|XP_002939911.1| PREDICTED: filamin A-interacting protein 1-like [Xenopus (Silurana)
           tropicalis]
          Length = 1134

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 94/287 (32%), Gaps = 38/287 (13%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I+   +   E +  + +  +D + ++  E       ++    E   +  +  ++D+K 
Sbjct: 130 DAIQANAQQWQEDIYEKPMNELDKVIEKHKET-HKRMLEQLLLAEKSQRQTMYELEDEKQ 188

Query: 421 RY-YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           ++  Y +   +    L Q+         +     A+   +       ++  L K K    
Sbjct: 189 KHTEYMEKSDEFTNLLEQERERLKKLIEQETAYQAKREKENHKKITKLRDELTKLKSFAL 248

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             + E   L         L++Q  ++ ++   + + Q+    +     E++      +  
Sbjct: 249 IVVDEQERLT------EQLKQQSAKIQELTSASQQAQE-KLAIVEVKAEEEERKANRLEA 301

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            L  +                  +    E  +  +     Q   L  +   LSRQ +E+E
Sbjct: 302 ELESQANK---------------FFQEQEGIMAKLTSEETQNRQLRLKLAALSRQIDELE 346

Query: 600 K-------------QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +              + +   KGE   +  L+  + E+  ++ ++E 
Sbjct: 347 ETNKTLRKAEEELCDLREKMNKGECGNSI-LMVEVEELRKRLLEMEG 392


>gi|297698503|ref|XP_002826357.1| PREDICTED: serine/threonine-protein kinase TAO2-like isoform 2
           [Pongo abelii]
          Length = 1122

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           +R A+L+   I          ++L+  +    + QK    L S    ++      + + L
Sbjct: 469 IRTASLVSRQIQEHEQDSALREQLSGYKRMRRQHQKQLLALESRLRGEREEHSARLQREL 528

Query: 542 CE--RGFGELLKQLDRQVRDAGLWSATTEANIVD---------VRQGYQQALALYKRFRL 590
                GFG   ++L R+ +  G   A                  ++     L   KR   
Sbjct: 529 EAQRAGFGAEAEKLARRHQAIGEKEARAAQAEERKFQQHILGQQKKELAALLEAQKRTYK 588

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           L  +KE++++++ +  +  + EK       L     Q+ Q +++E
Sbjct: 589 L--RKEQLKEELQENPSTPKREKAE----WLLRQKEQLQQCQAEE 627


>gi|255348998|ref|ZP_05381005.1| putative integral membrane protein [Chlamydia trachomatis 70]
 gi|255503537|ref|ZP_05381927.1| putative integral membrane protein [Chlamydia trachomatis 70s]
 gi|255507215|ref|ZP_05382854.1| putative integral membrane protein [Chlamydia trachomatis D(s)2923]
 gi|289525659|emb|CBJ15140.1| putative integral membrane protein [Chlamydia trachomatis Sweden2]
 gi|296435223|gb|ADH17401.1| putative integral membrane protein [Chlamydia trachomatis E/150]
 gi|296438942|gb|ADH21095.1| putative integral membrane protein [Chlamydia trachomatis E/11023]
          Length = 429

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVD---VRQGYQQALALYKRFRLLSRQKEEI 598
            + G   + + ++++ ++        +  +      R+ + QA   Y     LSR+ +E 
Sbjct: 108 QDEGLKNIRETIEKRQKETDRLKLHNDKLVEQLGQAREVFIQAKGRYDHMEELSRRLKEE 167

Query: 599 EKQIA---QVTAKGEAEKTAILISILHEVHIQIH 629
            +Q+    +   +   EK      +L E+   + 
Sbjct: 168 NQQLQMQLEAAVRERNEKILENQELLQELKETLA 201


>gi|197302902|ref|ZP_03167953.1| hypothetical protein RUMLAC_01630 [Ruminococcus lactaris ATCC
           29176]
 gi|197297983|gb|EDY32532.1| hypothetical protein RUMLAC_01630 [Ruminococcus lactaris ATCC
           29176]
          Length = 1125

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 46/399 (11%), Positives = 120/399 (30%), Gaps = 14/399 (3%)

Query: 251 FFGALNYLQKSIRKDVRRNSSSFI-------ILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
            +  L  ++K            +I       +L     D   L  + +     +  T + 
Sbjct: 152 LYYKLQDIRKVYEGFEEYLRDRYITKEEMLDVLARAVCDSELLKGSVIALDGFTGFTPVQ 211

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR-GEDPDSF 362
              +  L K+S ++++  + D       Y+    +                  G + +  
Sbjct: 212 IRLISELLKVSEKVIVTVEIDRREDPFIYRHPYQLFALSKQMVTSLVKTAQDAGAEVEES 271

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           +  Y K  +       +  ++    R +  +     +E       +         ++ R 
Sbjct: 272 VCLYEKVPYRFRENPEMAFLESELFRYSRRQYKKKKEESETCSGAISLHETKNPREEAR- 330

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
           Y +++IR  +++   +Y                        +  +     K  L      
Sbjct: 331 YVAESIRKLVREKDYRYRDIAVIAADLNLYADALEKACELFEIPVFMDHKKSILLNSFVE 390

Query: 483 REAALLLTLINHPAILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              +LL     +    +  ++ L      + + E+ +L ++  +  ++      +   +R
Sbjct: 391 YLRSLLAMAEQNFTY-ESVFRHLRTGLCGFTDEEIDRLENYCLALDIKGYKKWQQAWVRR 449

Query: 541 LCERGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               G  EL  L  L     +  +             +   QA+  Y     L ++  ++
Sbjct: 450 TPSTGEKELEELNHLRVIFVEKTMGLIQVLKQKKKTVRDVTQAVYEYLVQEKLQQKITQL 509

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           EK+         A++ A +  I+ E+  +   +  +E +
Sbjct: 510 EKKFQDRGELALAKEYAQVYRIVMELFDKFVSLLGEEEI 548


>gi|209413705|ref|NP_808536.2| forkhead-associated domain-containing protein 1 [Mus musculus]
 gi|205716469|sp|A6PWD2|FHAD1_MOUSE RecName: Full=Forkhead-associated domain-containing protein 1;
           Short=FHA domain-containing protein 1
 gi|151358069|emb|CAO77740.1| forkhead-associated (FHA) phosphopeptide binding domain 1 [Mus
           musculus]
 gi|151358124|emb|CAO78111.1| forkhead-associated (FHA) phosphopeptide binding domain 1 [Mus
           musculus]
          Length = 1420

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 78/272 (28%), Gaps = 10/272 (3%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                      ++  ++L      W  + E       +E       L+  ++  +     
Sbjct: 508 ITDQQLIEKIIQVTEDNLSFQQRKWTLQRETHLHPKQEETMHSVEKLRVLLDKCQACMRD 567

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
              S  ++  ++ L    ++      +    N          +       +  +LS    
Sbjct: 568 SCSSIDLKKEVELLQHLPLSPLVSGLQKTVVNILRVSLSWLEETEQLLGDLDIELSDSDK 627

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                L+  L ++  I+ +     A +       + L         E++    +   +  
Sbjct: 628 GFSLCLIYLLEHYKKIMSQSQDLQAQMNASRETQKSLRQ---EHLAEKEKLAEKLEQEEK 684

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +    +L ++        G   + +E  +   +   ++          L+ QKE +E  
Sbjct: 685 LKAKIQQLTEEKAALEESIGQEKSRSEEALEKAQARVREL------ENHLASQKEALENS 738

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +AQ   +   E          ++  Q+ Q + 
Sbjct: 739 VAQ-EKRKMREMLEAERRKAQDLENQLTQQKE 769


>gi|148358645|ref|YP_001249852.1| chromosome segregation SMC protein [Legionella pneumophila str.
           Corby]
 gi|148280418|gb|ABQ54506.1| chromosome segregation SMC protein [Legionella pneumophila str.
           Corby]
          Length = 1164

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 50/394 (12%), Positives = 122/394 (30%), Gaps = 20/394 (5%)

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
            G++ Y   GA    +      +   + +    + G   V  L +A  + + + L  A  
Sbjct: 110 DGESFYYLNGARCRRKDITDIFLGTGAGARSYSIIGQGTVSRLIEAKPEELRAYLEEAAG 169

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
             + +   + + + +     +   +    +  +L         +            +  I
Sbjct: 170 VSKYKERRRETLQRIEQTRDNLTRVADIRE--ELGKHLQRLERQAKAAERYTILKEEEKI 227

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
                 A +         V     +E   R+                    ++D   +  
Sbjct: 228 CRAEIQALKWQEYSEKQTVKQRELQELAIRNEQQQSLLTSCYKERAVLNEQLQDAIDQSQ 287

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             Q    +      +         R  K+    R Q     +L++  L            
Sbjct: 288 SIQDSLYQSGTEIARLEEAIQQQEREKKRLENDRQQMQVDSQLIEKQLKLDNEELHNCKL 347

Query: 484 EAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSF--LFSDFVEQKYFLPEEIHQR 540
           +A  L   ++H  +  +EQ     + + + ++ +K+W    + S+ ++ +Y L +   Q 
Sbjct: 348 KAQQLEEHLHHLKMEFKEQESLWQEKQKEQSQWEKIWQEVQINSNTIKNEYQLTQAKLQH 407

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L ++    L+           L     E + + +    +  + L ++   L   +E  E+
Sbjct: 408 LEQKRHQVLV----------RLEKLNLEQSAISLDDLQKNKIKLQEKHFQLKETQEFDEE 457

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           Q+ Q       E  + L + L     Q+H ++ +
Sbjct: 458 QLRQAN-----ETQSDLQNQLQNTEQQLHALQDE 486


>gi|72076348|ref|XP_795944.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115951481|ref|XP_001189286.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 639

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/189 (11%), Positives = 73/189 (38%), Gaps = 11/189 (5%)

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512
           + +  + +   + +        K++++   +E  L   +  +  + ++  +        +
Sbjct: 452 SNKESESEKRLEDIQALREKMKKVAEETRSKEDMLKQLVAEYERMAKDVNR--------S 503

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
              +++   + +   +++         R  ++   ++  +LDR                 
Sbjct: 504 AYTRRILEIVANIRKQKEDINKVLGDTRTLQKEINQVSGKLDRTFTVTDELIFRDAKKDE 563

Query: 573 DVRQGYQQALALYKRFRLLSRQKEE---IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            VR+ Y+   AL++ F  L +  EE   I ++I ++  + + E +   ++ L ++     
Sbjct: 564 AVRKAYKYLAALHENFDQLIKTLEETGTILREIRELEDQIDTESSKKTVTNLEKITNDYK 623

Query: 630 QIESQEAMI 638
           Q++ + A +
Sbjct: 624 QMKQENAAL 632


>gi|42525689|ref|NP_970787.1| nuclease SbcCD, C subunit, putative [Treponema denticola ATCC
           35405]
 gi|41815700|gb|AAS10668.1| nuclease SbcCD, C subunit, putative [Treponema denticola ATCC
           35405]
          Length = 1030

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 18/212 (8%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y  A +  +    QK   + +  G      A  R   G  ++L +++     +    
Sbjct: 662 KKQYDDAFKS-IPSDIQKENIDDTIEGCNEMIFASDRKISGYEEKLKENNDRHTSIKAGL 720

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             R+  L        ++L+E  +E     ++      L   L S   E+K    EE   +
Sbjct: 721 IQRQEQLAKW---EKSLLEE--EENLKDSFERKGFSSLKELLDSILPEEKISDFEETITK 775

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E        ++  +   AGL         +   +   + + L K       +  EI+ 
Sbjct: 776 FKEE-------KITLEHSAAGLKKDIEGKTFIQPEKIEDEIIILQKNLDEEQDRLAEIKS 828

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            + ++      +      S+L E+  +  + +
Sbjct: 829 SLDKL-----KDLFERRQSLLKELKQRAEEAQ 855


>gi|15605347|ref|NP_220133.1| hypothetical protein CT616 [Chlamydia trachomatis D/UW-3/CX]
 gi|237803045|ref|YP_002888239.1| putative integral membrane protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|255311438|ref|ZP_05354008.1| putative integral membrane protein [Chlamydia trachomatis 6276]
 gi|255317739|ref|ZP_05358985.1| putative integral membrane protein [Chlamydia trachomatis 6276s]
 gi|31563237|sp|O84621|Y616_CHLTR RecName: Full=UPF0242 protein CT_616
 gi|3329062|gb|AAC68220.1| hypothetical protein CT_616 [Chlamydia trachomatis D/UW-3/CX]
 gi|231274279|emb|CAX11074.1| putative integral membrane protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296436152|gb|ADH18326.1| putative integral membrane protein [Chlamydia trachomatis G/9768]
 gi|296437080|gb|ADH19250.1| putative integral membrane protein [Chlamydia trachomatis G/11222]
 gi|296438012|gb|ADH20173.1| putative integral membrane protein [Chlamydia trachomatis G/11074]
 gi|297140514|gb|ADH97272.1| putative integral membrane protein [Chlamydia trachomatis G/9301]
 gi|297748746|gb|ADI51292.1| Hypothetical membrane associated protein [Chlamydia trachomatis
           D-EC]
 gi|297749626|gb|ADI52304.1| Hypothetical membrane associated protein [Chlamydia trachomatis
           D-LC]
          Length = 429

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVD---VRQGYQQALALYKRFRLLSRQKEEI 598
            + G   + + ++++ ++        +  +      R+ + QA   Y     LSR+ +E 
Sbjct: 108 QDEGLKNIRETIEKRQKETDRLKLHNDKLVEQLGQAREVFIQAKGRYDHMEELSRRLKEE 167

Query: 599 EKQIA---QVTAKGEAEKTAILISILHEVHIQIH 629
            +Q+    +   +   EK      +L E+   + 
Sbjct: 168 NQQLQIQLEAAVRERNEKILENQELLQELKETLA 201


>gi|237829815|ref|XP_002364205.1| nuf2 family domain-containing protein [Toxoplasma gondii ME49]
 gi|211961869|gb|EEA97064.1| nuf2 family domain-containing protein [Toxoplasma gondii ME49]
 gi|221507069|gb|EEE32673.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 573

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 69/221 (31%), Gaps = 8/221 (3%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           Q +  R +Q   +   E                ++      ++  L    L      +E 
Sbjct: 180 QPLAQRQKQQQSELEEELRQRHSELGALMEEFKERQAVHGRLELELGDLVLELMNLKQER 239

Query: 486 ALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             L   +++ P    +  +   ++R     L      L +    Q+  L          +
Sbjct: 240 EELHDQVVHSPE---KLMERRDELRVQQKHLDAQLQELENLAASQQKLLLAFAKAVKKAK 296

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-QQALALYKRFRLLSRQKEEIEKQIA 603
              E+L     QV    L   +       + +   +Q   L K  + L  ++EE+ +Q+ 
Sbjct: 297 KAMEILSAHRDQVLAPHLGFRSDMRTREKLFRELGEQKEQLSKAVQDLQAEREELARQLE 356

Query: 604 QVTAKGEAEKTA---ILISILHEVHIQIHQIESQEAMIEGF 641
               K + E+T     L     EV  +   +  Q+ M   F
Sbjct: 357 DQERKKDEEETELRGHLARAKREVEERKKALADQQDMTAAF 397


>gi|169596616|ref|XP_001791732.1| hypothetical protein SNOG_01073 [Phaeosphaeria nodorum SN15]
 gi|160701351|gb|EAT92568.2| hypothetical protein SNOG_01073 [Phaeosphaeria nodorum SN15]
          Length = 1134

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/287 (10%), Positives = 88/287 (30%), Gaps = 31/287 (10%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK---NCINHI 415
           P          A  +               +++++S +   + A                
Sbjct: 8   PSEHHHEGPGDAPRRKRGRPSKNQTSSQMSQSQSQSQSQSQDVASSSKRTASPLELSQTK 67

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYIT-------EHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           + ++++      I + +QQ F +            S      + N R   +   S  +M 
Sbjct: 68  RAKRVQDDDEDQIAEEIQQSFSRSQRGDTIHVDTQSSTSTTTRHNGRRHSEFPASVAVMD 127

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                 +    P   +A++                    ++ D+  ++++   L +    
Sbjct: 128 DDDDDEEDHLAPESAQASI------------------GAVKRDHTTMRRVRHSLPAQLGV 169

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
           ++    E  +          +L    R+       S    +     ++  +Q L L ++ 
Sbjct: 170 ER-VDEEIDNTHFQYAPLTAVLDGRTRRRLRRSHLSQEVNSYEDHQKKDKKQMLQLREQL 228

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTA-ILISILHEVHIQIHQIESQ 634
           +    + +++E ++ + +  G  + +   L   L+E   +++ + + 
Sbjct: 229 QAQDAKIKDLEYRL-EASRLGNIDVSTPELAQELNEAREELNALRAS 274


>gi|149728569|ref|XP_001489719.1| PREDICTED: sarcolemma associated protein isoform 3 [Equus caballus]
          Length = 790

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 86/263 (32%), Gaps = 9/263 (3%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
           K+       +    + E +       +   + +           D         A+++RL
Sbjct: 322 KVAEGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDFTNERLTALQERL 381

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
             + + ++T+     +  K+N     +   S  L  S       +    + E  L   L 
Sbjct: 382 --IVEGHLTKVVEETKLSKENQARAKESDLSDTLSPSKEKSSDDTTDAQMDEQDLNEPLA 439

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSD-----FVEQKYFLPEEIHQRLCERGFG 547
               +  +     ++I     E+Q L   L          +QK F  + + +    + + 
Sbjct: 440 KVSLLKDDLQGAQSEIE-AKQEIQHLRKELIEAQELARASKQKCFELQALLEE-ERKAYR 497

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             +++  +Q++           NI ++R+     +   +   L +R +  +  Q A+  A
Sbjct: 498 NQVEESTKQIQVLQAQLQRLHINIENLREEKDNEITSTRDELLSARDEILLLHQAAEKAA 557

Query: 608 KGEAEKTAILISILHEVHIQIHQ 630
                  A L   L +V  ++ +
Sbjct: 558 SERDTDIASLQEELKKVRAELER 580


>gi|115484393|ref|NP_001065858.1| Os11g0170200 [Oryza sativa Japonica Group]
 gi|62701929|gb|AAX93002.1| coiled-coil protein [Oryza sativa Japonica Group]
 gi|77548822|gb|ABA91619.1| coiled-coil protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113644562|dbj|BAF27703.1| Os11g0170200 [Oryza sativa Japonica Group]
 gi|125576355|gb|EAZ17577.1| hypothetical protein OsJ_33115 [Oryza sativa Japonica Group]
          Length = 901

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 77/217 (35%), Gaps = 21/217 (9%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH-- 494
           ++     S   +     A     + P      +       +   SL E  +L T+ +   
Sbjct: 2   REEGGIASPGEKPIPNGASPNHSQSPKICSRITDNETQGTATAKSLNEKLVLETVSDDSS 61

Query: 495 --------PAILQEQYQELADIRYDNNELQKLWSFLF-----SDFVEQKYFLPEEIHQRL 541
                   P +      E        +  +KL S L       D V+Q   + EE     
Sbjct: 62  TQHCQSPQPDVFTNVKDE-DMQDSVKSLSEKLASALLTINAKDDLVKQHTKVAEEAVAGW 120

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +      +  L R +  +   +A+ +  +  +    ++ +   ++ R    Q+E+I   
Sbjct: 121 EQAEAE--VSTLKRLLEASTQKNASLDDQVNHLDDALKECVRQLRQAR--EEQEEKIRDA 176

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           +A+ T + ++ K+  L + ++E+  Q+   + + A +
Sbjct: 177 VAKKTQELDSHKS-ELQNHIYELKQQLEAAKLEAATV 212


>gi|47575800|ref|NP_001001244.1| myosin, heavy chain 4, skeletal muscle [Xenopus (Silurana)
            tropicalis]
 gi|45595719|gb|AAH67305.1| myosin heavy chain [Xenopus (Silurana) tropicalis]
          Length = 1935

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/273 (9%), Positives = 88/273 (32%), Gaps = 17/273 (6%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       + +  ++       + I+ +       + +  
Sbjct: 1561 IQLELNQVKSEVDRKIAEKDEEIEQLKRNSQRSIDTMQSTLDSEIRSRNDALRLKKKMEG 1620

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ-RLMQSSLVKGKLSKKPSLREAALLL 489
             L +L  +    +       K+    + Q   +Q +L ++   +  L ++ ++ E     
Sbjct: 1621 DLNELEIQLGHANRQASEAQKQLRNVQGQFKETQLQLDEAIRAQEDLKEQVAVTER---- 1676

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFG- 547
                +     E  +  A +       +K+    L       +    +       ++    
Sbjct: 1677 ---RNNLFQAEIEENRAGLE-QTERSRKIAEQELLDASERLQLLHSQNTSLINSKKKLES 1732

Query: 548  ---ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               +L  + +  V++A       +  I D     ++          L R K+ +E+ +  
Sbjct: 1733 DICQLQNEAEEAVQEARNAEEKAKKAITDAALMAEELKKEQDTSAHLERMKKNLEQTVKD 1792

Query: 605  VTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
            +  + +  +   +      L ++  ++ ++E++
Sbjct: 1793 LQHRLDEAEQLAMKGGKKQLQKLESRVRELENE 1825



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 72/219 (32%), Gaps = 26/219 (11%)

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGK 475
            D   R    +  + +L Q  Q    +               +  +   + LM        
Sbjct: 1378 DAIQRTEELEEAKKKLAQRLQDAEEQVEAVNSKCASLEKTKQRLQSEVEDLMVDVERANS 1437

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
             +     ++      L+      Q+  +  A++     E + L + +F      +  L  
Sbjct: 1438 AAAALDKKQRNFDKVLV---EWKQKYEEGQAELEAALKESRSLSTEIFKMKNAYEEALEH 1494

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                +   +   + +  L  Q+ ++G                 +  + L K  + + ++K
Sbjct: 1495 VETLKRENKNLQQEISDLTEQIGESG-----------------KSVVELEKAKKQVEQEK 1537

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             +++  + +     E E+     + +  + ++++Q++S+
Sbjct: 1538 NDLQAALEEAEGSLEHEE-----AKILRIQLELNQVKSE 1571


>gi|71655786|ref|XP_816451.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70881579|gb|EAN94600.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 964

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 65/207 (31%), Gaps = 4/207 (1%)

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
              K + +H       K     R +K   +        KG++S      E      +   
Sbjct: 493 SLAKLLQKHRQELIDSKDEEDRRVRKFIEEVTFSLETRKGRVSTAMERAERVKKSAMREQ 552

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQ 552
            ++L+ +          N  L++L   L ++           +  +L +  +   E   +
Sbjct: 553 KSLLERKTSLREKTLKQNEGLRELQGQLLNE-KMGIDAEIATLEAKLAKLRQASAEKEAE 611

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           L     +     A  E+   D+    ++      R      Q ++ E  +          
Sbjct: 612 LQDVTSNLRRMEAKQESMENDIDSLIKEEEDRMHRAAADLEQLQQ-ESDVLHAETIEFDT 670

Query: 613 KTAILISILHEVHIQIHQIESQEAMIE 639
           K  +L+S L +   +I   E +  ++E
Sbjct: 671 KRELLLSELQDGVTRIDSYEQRRTLLE 697


>gi|328866940|gb|EGG15323.1| pleckstrin domain-containing protein [Dictyostelium fasciculatum]
          Length = 1086

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 94/292 (32%), Gaps = 36/292 (12%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
           +   + L   +  W+   E +     D+  + +   +      +D+  R      +  + 
Sbjct: 328 EYTQQQLDQYNEYWRHYYEQQRQQEVDQEKQRDQERERIEQQQRDEYNR--LQSELAKQR 385

Query: 433 QQLFQ-KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            ++ + K   +     +  K     +  +   QR++     + K       +E  L    
Sbjct: 386 DEVERMKQQLQQQQQAQMAKGEESKKQLEAERQRIIDWQQEEMKRQMYEVQKERELAR-- 443

Query: 492 INHPAILQEQYQELADIRYDNNE---LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             H     E    LA+ +  + E    Q+         +EQK    E   Q   +R + E
Sbjct: 444 -KHEE---EVRASLAEEQRQSQEKLTTQRYQLQQQQTQIEQKMRDDESRRQDYEKRQYEE 499

Query: 549 LLKQLD----RQVRDAGLWSATTEANIVDVRQGY-QQALALYKRFRLLSRQKEEIE---- 599
             K+           A     + E +    R+ Y +Q   + KR   + ++K+ +E    
Sbjct: 500 TRKREQMIDQHHQELAQQIKRSEELSKSKQREEYQKQQEEIKKRQEEIEKEKQSLEDKKK 559

Query: 600 ---------------KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                           ++ +     + E+       L ++  +  +I+ QEA
Sbjct: 560 KEEQEREEKRKEAEKGRLLEQKRLKDQEEMLRREQELLDIQKKDLKIQQQEA 611


>gi|242789628|ref|XP_002481402.1| filament-forming protein (Tpr/p270), putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218717990|gb|EED17410.1| filament-forming protein (Tpr/p270), putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 1997

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 1/124 (0%)

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT-TEAN 570
           + E + L   L     + K  + E    R  +    E L +L R   +  + S   T   
Sbjct: 490 SKETEILRQQLRDLSAQVKVLVLEVALSREDQEYDREELVKLARNEIEESMASLNATGRF 549

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           I      ++    L ++   L R   E+  ++    A+            L E+ I++  
Sbjct: 550 ITQNLTTFKDLSELQEQNVTLRRMLRELGDRMESQEARERESSYQQDQEELKELRIRVQT 609

Query: 631 IESQ 634
              +
Sbjct: 610 YRDE 613


>gi|148691855|gb|EDL23802.1| mCG13426 [Mus musculus]
          Length = 2511

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 108/341 (31%), Gaps = 42/341 (12%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
           +   +   K ++++   +I   +      +  +D         K   EK I       + 
Sbjct: 458 EKENQRLNKKVEILENEIIQEKQSLQNCQNLSKD-----LMKEKAQLEKTIETLRENSER 512

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
             K   +          +  +    +    +KD            ++  ++  + I E  
Sbjct: 513 QIKILEQENEHLNQTVSSLRQRSQISAEARVKD-----------IEKENKILHESIKETC 561

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
           G     +   R   ++    +       + +       +E  LL   I +  I  E+ + 
Sbjct: 562 GKLSKIEFEKRQMKKELELYKEKGERAEELENELNHLGKENELLQKKITNLKITCEKLET 621

Query: 505 LA----DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD---RQV 557
           L     ++  +N + +K      +   + +    E              ++ L     ++
Sbjct: 622 LEQENSELERENRKFKKTLDSFKNLTFQLESLEKENSQLDEENLELRRSVESLKCASMRM 681

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-----------RQKEEIE---KQIA 603
               L +   E+    +R+G +   A +K+   L            R ++ +E   K+I 
Sbjct: 682 AQLQLENKELESEKEQLRKGLELMRASFKKTERLEVSYQGLDTENQRLQKALENSNKKIQ 741

Query: 604 QVTAKG-EAEKTAILISI-LHEVH---IQIHQIESQEAMIE 639
           Q+ ++  + E     +   L E+     ++ Q+E +   +E
Sbjct: 742 QLESELQDLEMENQTLQKSLEELKISSKRLEQLEKENKSLE 782


>gi|115709861|ref|XP_781919.2| PREDICTED: similar to Coiled coil domain-containing protein 46
           [Strongylocentrotus purpuratus]
 gi|115973047|ref|XP_001192708.1| PREDICTED: similar to Coiled coil domain-containing protein 46
           [Strongylocentrotus purpuratus]
          Length = 950

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/341 (10%), Positives = 105/341 (30%), Gaps = 24/341 (7%)

Query: 327 GLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLW 386
                +  + +          +   LL      +  +         + I++         
Sbjct: 264 ASSMMFDDVSMETRQEKQHLEMRTKLLEAKFHEEKLLIQQRHDEAIQKILDRKNTEMDEM 323

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
           K     +  +  +  ++L+  L+           +    + I +  + +     T  +GY
Sbjct: 324 KIHYRKKVADLEETNSKLDKKLQALSKEFSHA--KESRDKQISELRKMVEHSSQTTLNGY 381

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL------------LTLINH 494
            +         +Q+    +  Q+S ++  L       +   +              ++ +
Sbjct: 382 EKKLHDAVADYEQEKFEMQKKQTSAIQDILEDTNDKLQKMEMEYNAQVESHVSYFLILKY 441

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
            A+ ++   +  D   +   L+           ++      ++ +    + F + + +L 
Sbjct: 442 IALEKDYDLKKIDYERELKNLRGKSEARVEFLKDEHATSLAKLSE--SNKEFEDRVHELR 499

Query: 555 RQVRDAGL--WSATTEANIVDVRQGYQQALALYKRFRLLSRQK----EEIEKQIAQV-TA 607
           + ++D+ L       E      +    Q     ++ + L  Q     E++E+Q+ Q   A
Sbjct: 500 QALQDSELNRQRQVRELESEYKQDKLHQEQLSERKLQGLRSQMGVEKEDLERQLRQAHNA 559

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             + ++    +  L  +  Q  +  + E         SGR+
Sbjct: 560 NHDKDEQIKRLKELQRLQAQQAE-RALEDFKNQVETNSGRM 599


>gi|157124551|ref|XP_001654101.1| centrosomal protein [Aedes aegypti]
 gi|108873947|gb|EAT38172.1| centrosomal protein [Aedes aegypti]
          Length = 1970

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L   +     +++              G  E    L+++          TE N+  +
Sbjct: 1115 NKELRDHVKRVEGQRREQARSMDDALQKIAGLEESRNLLEQEKVRLQTILKETENNMTKL 1174

Query: 575  RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             +    A    ++F+  S Q +  EK++ Q     E+E+   ++  LH++  Q+  +E  
Sbjct: 1175 NKDLSTAQTDIQKFQSQSTQNDAAEKEL-QARLTNESEEKERILQELHQIKKQMSDLEGT 1233


>gi|147898636|ref|NP_001081372.1| structural maintenance of chromosomes protein 2 [Xenopus laevis]
 gi|1722856|sp|P50533|SMC2_XENLA RecName: Full=Structural maintenance of chromosomes protein 2;
           Short=SMC protein 2; Short=SMC-2; AltName:
           Full=Chromosome assembly protein XCAP-E; AltName:
           Full=Chromosome-associated protein E
 gi|563814|gb|AAA64680.1| XCAP-E [Xenopus laevis]
          Length = 1203

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 54/155 (34%), Gaps = 18/155 (11%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLD 554
           LQE  +EL  ++      ++L         E K    E +  +L +  +    E L  L 
Sbjct: 696 LQEVEKELMTLKNTVERYRQLKQQW-----EMKSEEAELLQTKLQQSSYHKQQEELDSLK 750

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-SRQKEEIEKQIAQVTAKGE--- 610
           + + ++      T+       + ++      K       R+ +E ++++     K +   
Sbjct: 751 QTIEESEETLKNTKEVQKKAEEKFKVLEHKMKNAEAERERELKEAQQKLDTAKKKADASN 810

Query: 611 ------AEKTAILISILHEVHIQIHQIESQEAMIE 639
                  ++   L+  L E+  +    + Q   ++
Sbjct: 811 KKMKEKQQEVDALVLELEELKREQTTYKQQIETVD 845


>gi|7243049|dbj|BAA92572.1| KIAA1334 protein [Homo sapiens]
          Length = 989

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 101/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 603 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 660

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 661 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLN 720

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 721 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 779

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 780 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 839

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 840 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 877


>gi|116193661|ref|XP_001222643.1| hypothetical protein CHGG_06548 [Chaetomium globosum CBS 148.51]
 gi|88182461|gb|EAQ89929.1| hypothetical protein CHGG_06548 [Chaetomium globosum CBS 148.51]
          Length = 496

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 58/201 (28%), Gaps = 7/201 (3%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q++     G+    K       +   + + +   + + +         ++LL  ++  P
Sbjct: 74  TQEWFASRPGFLSALKPLIDSAKEYQIAPKAIDDHVQEERGRWYAERVRSSLLRLMVEDP 133

Query: 496 AILQEQYQELADIRYDNN--ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                 +++L D+       +   L   +     +            L ER         
Sbjct: 134 HGRGTVFEKLQDLSTATAGGDPVALAREVADILRKGPLAPESGEDSHLPERVAAASDVAA 193

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           + +V     +         D ++     L        +  +  +      + TA G  E+
Sbjct: 194 ETEVWRDAFFKTKDGTVPEDHQKYVNMLLYHRLSMEQVVDRILD-----ERQTAMGAREQ 248

Query: 614 TAILISILHEVHIQIHQIESQ 634
           T  L   L E+       E+Q
Sbjct: 249 TDKLNQRLDELRRARAAHEAQ 269


>gi|296219922|ref|XP_002756091.1| PREDICTED: serine/threonine-protein kinase TAO2 isoform 2
           [Callithrix jacchus]
          Length = 1121

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           +R A+L+   I          ++L+  +    + QK    L S    ++      + + L
Sbjct: 469 IRTASLVSRQIQEHEQDSALREQLSGYKRMRRQHQKQLLALESRLRGEREEHSARLQREL 528

Query: 542 CE--RGFGELLKQLDRQVRDAGLWSATTEANIVD---------VRQGYQQALALYKRFRL 590
                GFG   ++L R+ +  G   A                  ++     L   KR   
Sbjct: 529 EAQRAGFGAEAEKLARRHQAIGEKEARAAQAEERKFQQHILGQQKKELAALLEAQKRTYK 588

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           L  +KE++++++ +  +  + EK       L     Q+ Q +++E
Sbjct: 589 L--RKEQLKEELQENPSTPKREKAE----WLLRQKEQLQQCQAEE 627


>gi|260792118|ref|XP_002591074.1| hypothetical protein BRAFLDRAFT_69370 [Branchiostoma floridae]
 gi|229276274|gb|EEN47085.1| hypothetical protein BRAFLDRAFT_69370 [Branchiostoma floridae]
          Length = 1360

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 44/100 (44%), Gaps = 3/100 (3%)

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVR 558
            ++ELA +     EL+     L +   +      EE  + + E  +   +++++ D+ +R
Sbjct: 540 VHEELAALEQRREELEMRLEQLLNASADIPETGTEEFQETVEELEQELSDVVQEEDQILR 599

Query: 559 DAGL-WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           +         +   +++R+  QQ + L  R   + RQ E+
Sbjct: 600 EEDSSMEGQDDVESMEIREIEQQIVTLDARREEIERQLEQ 639


>gi|206598160|gb|ACI15967.1| hypothetical protein [Bodo saltans]
          Length = 1025

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 47/112 (41%), Gaps = 7/112 (6%)

Query: 534 PEEIHQRLCERGF------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
            E++   L  +              +++   +     A T A  V  ++ ++       R
Sbjct: 217 IEQLRAELATKKLVLQGLREREQAMIEKARSEKASKMAATHAAEVQAKKHWEDLEREKNR 276

Query: 588 FRLLSRQKEEIEKQ-IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
                R++EE +++ + +   + EAE+TA  +  +  +  +  Q++++EA +
Sbjct: 277 LESEFRREEEAQEEDLRRERQRIEAEETAKFVPKIEALKEKHQQLQAEEAAL 328


>gi|168029338|ref|XP_001767183.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681679|gb|EDQ68104.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 536

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 50/379 (13%), Positives = 111/379 (29%), Gaps = 33/379 (8%)

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
              AG   + +    A+       ++     +    D    GL+      D   C +   
Sbjct: 135 CAYAGAGRMNAICAEAIRTEPTFDVYGKEIIVFSNCDAGGDGLQLGSVCCDQNPCGIGRE 194

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP--LVDMLWKRETENRSFNTPDERAE 403
            +    +  + + P    R        ++ +  LP   V+     E            + 
Sbjct: 195 KKNKEAIRYQLKQPSMVERLDAVATEIRVELTPLPSKQVEEAAIAECNRARNYERTNVSS 254

Query: 404 LEIHLKNCINHIKDQKLRYYYSQ-------AIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
               L      I    L  YY +            L++L    IT+              
Sbjct: 255 SSRELGRPNMAITPAVLVEYYQRVDLSGVGQQARELKELISAQITQLQMAVEKMDNEFSL 314

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP------AILQEQYQELADIRY 510
           R       ++++    K    ++ S+   AL  + + H          +E     + +  
Sbjct: 315 RQVLEEKDKIIEDQKKKIGNLQRASVT-DALKYSRLEHQFKETQAEWTKENKLAKSLMEL 373

Query: 511 DNNELQKLWSFL------FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
              E  ++ +         ++    +  L +   ++          +QL R++ +     
Sbjct: 374 TKQECMEMRNQYQEEKNRVAELEAGRSKLEDNFRRQSESSKTEN--EQLKRRIVELEAEM 431

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            T      +V         L K+   L  Q +E + QIA +  +         +  L  +
Sbjct: 432 ITVTTQQGEVNPASTSLRELEKQVHALEEQLKERDTQIALLEPQ---------VRQLGAL 482

Query: 625 HIQIHQIESQEAMIEGFGK 643
           +  +  + ++E + EG G+
Sbjct: 483 NEDLTALLNREQVGEGVGE 501


>gi|146098115|ref|XP_001468326.1| hypothetical protein [Leishmania infantum]
 gi|134072693|emb|CAM71410.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 1228

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 78/234 (33%), Gaps = 13/234 (5%)

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
                HL+N ++ +K + +      A+ + L +  Q+   +H+    + +  +       
Sbjct: 489 QHRHAHLQNEVDRLKCELVAERDRSAMAEALFEDAQRKKEDHAAQLAHEQAISTSVAATL 548

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
              R   S+      +      E   L   ++H    +   Q+         E+++L   
Sbjct: 549 EPTRKSASASAATAAASAAHEEERQRLAEKLDHMQAERGVLQQ---------EVRQLTEA 599

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
                        E    +       + L  L+++       +   +A    + +   Q 
Sbjct: 600 ASQLQCTLDTRDHEYAVAQAEWTEAQKAL--LEKRSVFEAQVAKDRDAYQEKLHRLQTQL 657

Query: 582 LALYKRFRLLSRQKEEIE--KQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            A  KR + L   K+  E  +  A+  A    ++  ++ + L  +  Q+ ++E 
Sbjct: 658 EAEQKRGKALEADKQAAEHARTAAETQAASAEQRCGVMQAELAALQQQLKRLEE 711


>gi|322712198|gb|EFZ03771.1| myosin type II heavy chain [Metarhizium anisopliae ARSEF 23]
          Length = 2388

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 84/234 (35%), Gaps = 21/234 (8%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG------------PSQR 465
            ++ R      I  R Q + + +I     Y R ++  A    Q+                 
Sbjct: 860  EEQRDALITEIMARFQSVARGFIQRRVAYKRLFRTEATRIIQRNFNIYLRLVENPWWQLI 919

Query: 466  LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY-DNNELQKLWSFLFS 524
            +    L+    +     +  A++  L     + ++  Q+L D R   + E+ ++   L S
Sbjct: 920  VKMKPLLGATRTATEVKKRDAMIKQLNEKMRLDEKVRQKLEDDRRNTHTEMVRIQQTLES 979

Query: 525  DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                      EEI +RL  R   EL ++L   + D        +  +    +  +     
Sbjct: 980  --ERALALDKEEIFKRLQTRE-AELEEKLSGAIDDQERLEDQLDELMEAKSRAEEDVEKF 1036

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
              +    +    ++E++ ++++AK     +  L + + E+  +  +   QEA +
Sbjct: 1037 RHQLEQAAGLIAKLEEEKSKLSAK-----SVELENAVKEISRKQSERSEQEAAL 1085


>gi|317057720|ref|YP_004106187.1| chromosome segregation protein SMc [Ruminococcus albus 7]
 gi|315449989|gb|ADU23553.1| chromosome segregation protein SMC [Ruminococcus albus 7]
          Length = 1191

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/142 (9%), Positives = 51/142 (35%), Gaps = 1/142 (0%)

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
             + + +    +  + ++ S + + ++E+          +   +   E L +L     + 
Sbjct: 367 FDRLINEADESDKAVSEVNSAISAAYLEKSRLSFAAESLKNTIQETAERLAELTEDSGEI 426

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
                  +  +  +++ +            +     ++ ++  +      +  +    S 
Sbjct: 427 KRNKELADKELDKLKKQHSDKQDAKSEKENVLGGMAKLLEKRREKLESAVSTFSQAD-SR 485

Query: 621 LHEVHIQIHQIESQEAMIEGFG 642
           L E++ +++ ++  E  +EGFG
Sbjct: 486 LTEINSRLNILKDLERSMEGFG 507


>gi|301610424|ref|XP_002934738.1| PREDICTED: centromere protein F [Xenopus (Silurana) tropicalis]
          Length = 2570

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 88/267 (32%), Gaps = 18/267 (6%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            E+        K+    +     +    L+  +      IK++K+     QA++ +++   
Sbjct: 2056 EAQLQSSDAEKQVLVQKVDELTENCTILQSKVHEAEMKIKEKKVLDEQLQAVKQQIEDTN 2115

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS--SLVKGKLSKKPSLREAALLLTLINH 494
             +     +      +  A+ R ++       +S    ++ +L +  + ++AAL   LI H
Sbjct: 2116 TRLCATTTEKTELTETIAKLRIEQEAQADRSRSDARELQNRLLQAEAKQQAALDALLIQH 2175

Query: 495  PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
               +Q    +L                      E +      +            L++L+
Sbjct: 2176 KEEIQALQGKLTLAE----------EHAIGHGYEVERLKAANVELNGSLGSAHRQLEELN 2225

Query: 555  RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA-----QVTAKG 609
            +                  +R   +    L +    L  +  E E+++      Q  A+G
Sbjct: 2226 QLKVSFAELKEEHARVCAALRHQVESCAELEQERDRLKGKINEREEELKHLQAKQQNAEG 2285

Query: 610  EAEKTAILISILHEVHIQIHQIESQEA 636
             A     L++ + E+   + + ++ EA
Sbjct: 2286 GASSNEDLLAEIEELKQWLEE-KTTEA 2311


>gi|297675082|ref|XP_002815525.1| PREDICTED: ankycorbin-like isoform 4 [Pongo abelii]
          Length = 951

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 97/286 (33%), Gaps = 27/286 (9%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 565 KAFLFERYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 622

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 623 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLN 682

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 683 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 741

Query: 540 RLCERG------------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           +L E              + +L   L+ +V    L    +      V     Q       
Sbjct: 742 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLALKLKESVKEKEKVHSEVVQI---RSE 798

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
              + R+KE I+  +     K + ++   L+    +   ++ +++ 
Sbjct: 799 VSQVKREKENIQTLL-----KSKEQEVNELLQKFQQAQEELAEMKR 839


>gi|284175313|ref|ZP_06389282.1| microtubule binding protein, putative [Sulfolobus solfataricus
           98/2]
 gi|261602800|gb|ACX92403.1| Protein of unknown function DUF1626 [Sulfolobus solfataricus 98/2]
          Length = 324

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 21/159 (13%)

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           +L L+   A  ++Q +E+  I + N  L  L   L                 +L      
Sbjct: 6   ILKLLKEDAEFRKQVEEILGISFINVTLADLKDILKGLLAS---------MDKLKSS--- 53

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             + QL    R A    A  E  +  + +  ++      +    +++ E+  +++ +   
Sbjct: 54  --VDQLVDAQRRAEERIAKLENAVEQLVEAQKRTDERITKLEESTKKLEQAVQELIEAQK 111

Query: 608 KGE------AEKTAILISILHEVHIQIHQIESQ-EAMIE 639
           K +       E    L+        +I ++E+  E ++E
Sbjct: 112 KHDERITKLEESIQKLVDAQRRAEERIAKLENAVEQLVE 150


>gi|255953819|ref|XP_002567662.1| Pc21g06170 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589373|emb|CAP95514.1| Pc21g06170 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 462

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 81/263 (30%), Gaps = 16/263 (6%)

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
            + R  E+++    +   + E         + + +      + +R  LQ        + S
Sbjct: 148 NFVRFRESQTPVIDEHFNKTEKTKSRIDELLAENQEMELRLREMRQDLQSNEAHVREKVS 207

Query: 445 GY----------GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL-TLIN 493
                       GR   + A   D+    +   Q  L +       S +EA  L   ++ 
Sbjct: 208 RNDALKARLLELGREQSRVAETLDRVKTERARRQQQLEEKTERTVRSRQEAEKLRPYVLE 267

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            PA LQ    EL++              +       +             +G  +LL  +
Sbjct: 268 SPATLQSSLAELSENLMREKAS---IDAMERRARALQTSSDTFTVVSNDVQGCVKLLDDI 324

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV--TAKGEA 611
             +++      +        +         + +  +LL RQ     ++I  +   A+ +A
Sbjct: 325 SAELQKEDEEESRAARTTEAISDRGNSVREVEQTEKLLQRQLARWVERIEALQKNAQEKA 384

Query: 612 EKTAILISILHEVHIQIHQIESQ 634
           E     +  L  V  Q+ +  ++
Sbjct: 385 ELAQERMEELRNVQRQLREERAE 407


>gi|190404708|gb|EDV07975.1| protein NUF1 [Saccharomyces cerevisiae RM11-1a]
          Length = 944

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 72/218 (33%), Gaps = 12/218 (5%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQ---KGPSQRLMQSSLVKGKLSKKPSLREA 485
             +    F +         R    +   +            M   L + ++ +    +E 
Sbjct: 74  ASQFDDSFPEIKANIPPSPRSGNVDKSRKRNLIDDLKKDVPMSQPLKEQEVREHQMKKER 133

Query: 486 --ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
               L + +     +     ++++     NE++ L   +     E+   L          
Sbjct: 134 FDRALESKLLGKRHITYANSDISNKELYINEIKSLKHEIKELRKEKNDTLNNYDTLEEET 193

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEAN-----IVDVRQGYQQALALYKRFRLLSRQKEEI 598
                 L+ L++++        + + +     I +  Q  ++   L ++ + +  Q  E+
Sbjct: 194 DDLKNRLQALEKELDAKNKIVNSRKVDDHSGCIEEREQMERKLAELERKLKTVKDQVLEL 253

Query: 599 E--KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           E    +  +  + + ++   L++ L+E+     + ++Q
Sbjct: 254 ENNSDVQSLKLRSKEDELKNLMNELNELKSNAEEKDTQ 291


>gi|150024115|ref|YP_001294941.1| chromosome segregation ATPase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149770656|emb|CAL42120.1| Putative chromosome segregation ATPase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 1110

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 116/303 (38%), Gaps = 28/303 (9%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
               +      + +SL   D     E +       ++        +   + IK QK +  
Sbjct: 496 NLQQQNENINALEKSLSKQDKQL-SELQKLQKTNKEKNDLDYKDKQKLDDFIKRQKQQDE 554

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             +   ++++   +K+  E +   +    ++  + +++   +Q+L+       +   +  
Sbjct: 555 MMKEFSEKIKDNLEKFKAEDNDPKKKILQERLEKSKEELEKNQKLLDELKRLNEKLDQDE 614

Query: 482 LREAA------------LLLTL--INHPAILQEQYQELAD-IRYDNNELQKLWSFLFSDF 526
           ++E               L  L  +     ++++ ++LAD +   + +  KL      + 
Sbjct: 615 IQEKLEKFEQKSKNQTKTLAQLVELTKRYYVEKKAEQLADKLDKLSEKEDKLADDKKENS 674

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS--ATTEANIVDVRQGYQQALAL 584
            E++  + +E  +   E+   +L K+         +       E+   D+++  ++    
Sbjct: 675 EEKQNEVNKEFDK--IEKELKDLDKENKELKSPLAIPHDKEKEESISKDLQKASEELQKK 732

Query: 585 YK-----RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE-SQEAMI 638
            +     + +  +++ +E+ +++ Q    GE E+    +++L +V   +     SQEA+I
Sbjct: 733 QQDKASAKQKNAAKKMKEMSQKMTQEMEGGEKEQLEEDVAMLRQVLDNLLAFSFSQEALI 792

Query: 639 EGF 641
           + F
Sbjct: 793 KNF 795


>gi|147856290|emb|CAN79643.1| hypothetical protein VITISV_027461 [Vitis vinifera]
          Length = 881

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 16/142 (11%)

Query: 512 NNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSATTE 568
           + EL +L   L     E K F    E + Q   ++    E  K++ +Q RD  L    + 
Sbjct: 489 DKELNELNKRLEQKESEMKLFGGDTEALKQHFGKKIMELEEEKRIVQQERDRLLAEVESL 548

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEK------QIAQVTAKGEAEKTAILISILH 622
           A   D ++   Q +   ++ + L  Q  +++K      Q+ +   K + E T  L   + 
Sbjct: 549 AATSDGQRQKVQDVHA-QKLKALEAQILDLKKKQENQVQLLKQKQKSD-EATKRLQDEIQ 606

Query: 623 EVHIQIHQIE---SQEAMIEGF 641
            +  Q  Q++    QEA  E F
Sbjct: 607 SIKAQKVQLQHKIKQEA--EQF 626


>gi|146413475|ref|XP_001482708.1| hypothetical protein PGUG_04663 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1210

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 81/220 (36%), Gaps = 20/220 (9%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            D +  L     +  + Y    +           + RL     V G    +  L+E+   
Sbjct: 118 ADVMNMLESAGFSRSNPYYIVPQGKITGLTNSKDADRLALLKDVSGAKVFETKLKESQ-- 175

Query: 489 LTLINH-------PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             ++N           L+     L+D++ ++ + +K +  L            + +  ++
Sbjct: 176 KEMMNSHHKRDRIDEALKSIDDRLSDLQIESKDFKK-YQTL--------DRTRKVLEFKI 226

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +R   +L  Q+D  +     +S   + ++ ++ +  +  + L +    L+   +    +
Sbjct: 227 FDRELSQLSNQIDEIIEKQDSFSGKLQQDLAEIEKRERVCIQLEETISKLNTSLKVTTLE 286

Query: 602 IAQVTAKGEAEKTAILISILH--EVHIQIHQIESQEAMIE 639
             Q+ ++ + + +      L   E+  Q+ + E + A+++
Sbjct: 287 HDQINSEVKQKLSEQADRELKLKELKTQLERDEQEAALLK 326


>gi|115433016|ref|XP_001216645.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114189497|gb|EAU31197.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 829

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAA-LLLTLINHPAILQEQYQEL-ADIRYDNNELQKLW 519
                 + +L       +    EA  L+ ++ N  A+L  + +EL + +    ++L++L 
Sbjct: 572 KETITARQTLEAQLTRSQEQAVEAQALIKSIENENAVLGRRNEELKSSLEKAQSDLRELR 631

Query: 520 SFLFSDFVEQKYFLPEEIHQR----LCERGFGELLKQLD--RQVRDAGLWSATTEANIVD 573
                          E+  Q+    L  +   +  + L+   Q +   L +A + A    
Sbjct: 632 DEHAEALNTVDRLQDEQKMQQPSPPLSPQTPRQDTRSLEESHQAQLKSLQTAHSTAISTL 691

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                     L        +++ +++ ++A +      E+     + +  +  +I ++ES
Sbjct: 692 RASHADSTRKLRDLLSAAEKREAKLKAELASLRTSRSTEE-----NEIQALRKEIRRLES 746

Query: 634 QEAMIE 639
             A+ +
Sbjct: 747 VIAVKD 752


>gi|311033445|sp|Q92805|GOGA1_HUMAN RecName: Full=Golgin subfamily A member 1; AltName: Full=Golgin-97
 gi|55959808|emb|CAI14346.1| golgi autoantigen, golgin subfamily a, 1 [Homo sapiens]
 gi|57160638|emb|CAI39632.1| golgi autoantigen, golgin subfamily a, 1 [Homo sapiens]
          Length = 767

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/263 (11%), Positives = 82/263 (31%), Gaps = 31/263 (11%)

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                ++     + D   +    Q I+++L+   +K+  + S   ++ ++N   +  +  
Sbjct: 62  RRNEQIRKLEARLSDYAEQVRNLQKIKEKLEIALEKH--QDSSMRKFQEQNETFQANRAK 119

Query: 463 SQRLMQSSLVKGKLSKKPSL----REAALLLTLINHPA-----ILQEQYQELADIRYDNN 513
               +  +L +        +    +E  +L   +         + Q + +      +   
Sbjct: 120 MAEGLALALARKDQEWSEKMDQLEKEKNILTAQLQEMKNQSMNLFQRRDEMDELEGFQQQ 179

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           EL K+   L            E        R      ++L    + +   S   E     
Sbjct: 180 ELSKIKHMLLKKEESLGKMEQEL---EARTRELSRTQEELMNSNQMSSDLSQKLEELQRH 236

Query: 574 ---VRQGYQQALALYK----RFRLLSRQKEEIEKQIAQ---------VTAKGEAEKTAIL 617
              + +     +A       +   L ++++E++  I Q            + + +    L
Sbjct: 237 YSTLEEQRDHVIASKTGAESKITALEQKEQELQALIQQLSIDLQKVTAETQEKEDVITHL 296

Query: 618 ISILHEVHIQIHQ-IESQEAMIE 639
              +  +  ++ Q +  +E + E
Sbjct: 297 QEKVASLEKRLEQNLSGEEHLQE 319


>gi|6320562|ref|NP_010643.1| Spc110p [Saccharomyces cerevisiae S288c]
 gi|417392|sp|P32380|NUF1_YEAST RecName: Full=Protein NUF1; AltName: Full=Spindle poly body spacer
           protein SPC110
 gi|4070|emb|CAA77668.1| nuf1 [Saccharomyces cerevisiae]
 gi|312175|emb|CAA51733.1| SPC110/NUF1 [Saccharomyces cerevisiae]
 gi|849173|gb|AAB64791.1| Nuf1p: Probable essential component of the nucleoskeleton (Swiss
           Prot. accession number P32380) [Saccharomyces
           cerevisiae]
 gi|207346403|gb|EDZ72910.1| YDR356Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|285811371|tpg|DAA12195.1| TPA: Spc110p [Saccharomyces cerevisiae S288c]
          Length = 944

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 72/218 (33%), Gaps = 12/218 (5%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQ---KGPSQRLMQSSLVKGKLSKKPSLREA 485
             +    F +         R    +   +            M   L + ++ +    +E 
Sbjct: 74  ASQFDDSFPEIKANIPPSPRSGNVDKSRKRNLIDDLKKDVPMSQPLKEQEVREHQMKKER 133

Query: 486 --ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
               L + +     +     ++++     NE++ L   +     E+   L          
Sbjct: 134 FDRALESKLLGKRHITYANSDISNKELYINEIKSLKHEIKELRKEKNDTLNNYDTLEEET 193

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEAN-----IVDVRQGYQQALALYKRFRLLSRQKEEI 598
                 L+ L++++        + + +     I +  Q  ++   L ++ + +  Q  E+
Sbjct: 194 DDLKNRLQALEKELDAKNKIVNSRKVDDHSGCIEEREQMERKLAELERKLKTVKDQVLEL 253

Query: 599 E--KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           E    +  +  + + ++   L++ L+E+     + ++Q
Sbjct: 254 ENNSDVQSLKLRSKEDELKNLMNELNELKSNAEEKDTQ 291


>gi|67541410|ref|XP_664479.1| hypothetical protein AN6875.2 [Aspergillus nidulans FGSC A4]
 gi|40739084|gb|EAA58274.1| hypothetical protein AN6875.2 [Aspergillus nidulans FGSC A4]
 gi|259480474|tpe|CBF71640.1| TPA: kinesin class 4 (Chromokinesin/Kif4 group) (Eurofung)
           [Aspergillus nidulans FGSC A4]
          Length = 1700

 Score = 39.9 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 78/262 (29%), Gaps = 32/262 (12%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
                       +    I  K  I  + D+  ++   + ++  +  L Q+         R
Sbjct: 406 HLSETLNTVQYAQRARAIQSKPRIQQVADESDKHAVIERLKAEVAFLRQQLRNAEDSDRR 465

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL--- 505
                 R   Q      L    L   +     S R A L+  L         + + +   
Sbjct: 466 TVAPQERTERQNEREIELQNQLLDVQEGYNALSQRHAKLISELARDSRPADAESESIVGD 525

Query: 506 --ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
               ++  ++  + +   +                         + ++ L+  +      
Sbjct: 526 SVERLKRSHSFAESVEQVVLEY---------------------EKTIQSLESSLSSTRAS 564

Query: 564 SATTEANIVDVRQ--GYQQALALYKRFRL--LSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
            A+TE+ +++      Y + +    + R+  L  ++   E  + ++ +K + + +     
Sbjct: 565 LASTESTLLERETKCTYVETVNAQLQARIQKLMDREASTETYLHELESKIDGQASGEEQH 624

Query: 620 ILH--EVHIQIHQIESQEAMIE 639
                E+  ++ +    EA  E
Sbjct: 625 AAMVSELRKELARARENEASCE 646


>gi|321450794|gb|EFX62674.1| hypothetical protein DAPPUDRAFT_336617 [Daphnia pulex]
          Length = 690

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 51/131 (38%), Gaps = 5/131 (3%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIH--QRLCERGFGELL---KQLDRQVRDAGLWSATT 567
            + + L   L ++          ++    RL ++   + L   +Q + + R   L  A  
Sbjct: 344 PDERALRQRLDAERKRVARSNETQVEHEARLHDQRIRQQLLRQEQAEEENRARLLAEAER 403

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +A      +   + LA  ++  +L +++E   + +A+   + +  +   + + L     +
Sbjct: 404 QAVFRQEEENRARLLAEAEQQAVLRQEEENRARLLAEAERQADLRQDEQIRARLQAEAER 463

Query: 628 IHQIESQEAMI 638
              +  QEA I
Sbjct: 464 QAALRQQEAAI 474


>gi|320103093|ref|YP_004178684.1| hypothetical protein Isop_1550 [Isosphaera pallida ATCC 43644]
 gi|319750375|gb|ADV62135.1| hypothetical protein Isop_1550 [Isosphaera pallida ATCC 43644]
          Length = 1474

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 1/139 (0%)

Query: 498  LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
            +    +EL + R    EL +L S +      +K     +  +        E    L+ + 
Sbjct: 1263 IDRLNRELQEARKGTQELARLRSIVARMAEREKLIEELQAREARLMAEAREERSALEDEN 1322

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
            R      A  E  +  + +       L +    L + ++E  ++I Q+    + E  A  
Sbjct: 1323 RVLQAQLAEMEKELESLSELRSAVHELEQTRIRLVQVQDEARREIEQIRFAADQE-IARY 1381

Query: 618  ISILHEVHIQIHQIESQEA 636
               L E+  ++ + E+  A
Sbjct: 1382 NEQLTELQTRLAEAEANRA 1400



 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 24/231 (10%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D        + I++RL Q           +       A       P   +   +L K   
Sbjct: 402 DPHAALQLIEEIQERLDQF-----AALRNFDSAAHAQADGTPPFEPPPTIETGALDKVPA 456

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYD--NNELQKLWSFLFSDFVEQKYF-- 532
                L E       +N      E  +  A   +   +   + ++  L +   E +    
Sbjct: 457 QDHLELMEE------LNRTRQRLEAAETQASELFAALDAGSRSIYLELDAVRREAQEQKQ 510

Query: 533 ----LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                 + + QRL E   G  L                 +  I    + Y +  +L+ + 
Sbjct: 511 NYERQIQTLRQRLDEVSQGTALP--ADLAEQLARLQQERDEAIAARDEVYAKTQSLFTQL 568

Query: 589 RLLSRQK-EEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEA 636
              S+Q   E+ +++  +  + +     T  L + + E+  ++ + E+++A
Sbjct: 569 DGDSQQLYMELAERLESLDQERQAHQRLTDELRATIAELRDRLERSEAEKA 619



 Score = 37.6 bits (85), Expect = 6.1,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 78/261 (29%), Gaps = 15/261 (5%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           +L         E +       +++   E  ++     + +          + ++L +L Q
Sbjct: 486 ALDAGSRSIYLELDAVRREAQEQKQNYERQIQTLRQRLDEVSQGTALPADLAEQLARLQQ 545

Query: 438 KYITEHSGYGRYWKKNAR-HRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLIN 493
           +     +     + K         G SQ+L      + +   +       L   L   I 
Sbjct: 546 ERDEAIAARDEVYAKTQSLFTQLDGDSQQLYMELAERLESLDQERQAHQRLTDELRATIA 605

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
              +     +  A+    +  + +L + L     + +    +     +      +L   L
Sbjct: 606 --ELRDRLERSEAEKASGSPAIDQLQAELKRLREQNEALSSQL---EIATAKAEDLFNSL 660

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           DR  ++  L   T  A     R+ ++  +A       L R+  E  +  +      + + 
Sbjct: 661 DRPTQEVWLDLDTLRAEARAEREFFKGRIA------ELERKLAESSRASSVRAQAVDQDA 714

Query: 614 TAILISILHEVHIQIHQIESQ 634
                +    +  Q+    ++
Sbjct: 715 LERARATTETLRSQLETTRAE 735



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 76/221 (34%), Gaps = 17/221 (7%)

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK-----LSKKPSLREAA 486
            L   ++  +    G  +  +          P   +  + L + +       ++ + REA+
Sbjct: 881  LAMNYESQLKTLQGRIKQLESQTASATPLTPVPPVDAAELERLRNDLRVSREQLAAREAS 940

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE---QKYFLPEEIHQRLCE 543
            +   L +    LQ +  EL       +        + ++      Q+    E++  +L  
Sbjct: 941  I-EQLTSQLETLQSRLAELETASASESPASAEVEAMVAELNATLRQREASIEQLTSQLET 999

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSRQKEEIE 599
                  L +L+         SA  EA + ++    +Q  A    L  +   L  +  +  
Sbjct: 1000 --LQGRLAELETGSASESPASAEVEAMVAELNATLRQREASIEQLTSQLETLQSELTKAR 1057

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             ++ ++ A  +   +        E+  Q+ ++E    M++G
Sbjct: 1058 TRLEKLEAPEDGSGSGGRSRE--ELKRQLSELEQVRTMLQG 1096


>gi|297303831|ref|XP_001105181.2| PREDICTED: GRIP1-associated protein 1-like [Macaca mulatta]
          Length = 855

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 89/297 (29%), Gaps = 35/297 (11%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
           +L  E       L   + +    +   E + L+  L      +K ++  +   Q  ++ L
Sbjct: 143 ELKWEMEKEEKRLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETL 202

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQK-GPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
               +  I E         K    R QK          SL + +  ++    E A  L  
Sbjct: 203 FNDSRNKIEELQQRKEADHKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRA 262

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCERGFGEL 549
           +    +  +       +     E   L + L         K      + ++        L
Sbjct: 263 LQD-QVSIQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLREQTTG-----L 316

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
             +L ++  +        +     +++  +    L ++ + + ++KE++ +++ +     
Sbjct: 317 AAELQQRQAEYENLMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQELQEARKSA 376

Query: 610 EA------EKTAILISI--------------------LHEVHIQIHQIESQEAMIEG 640
           E       E     +                      L  +   + ++++Q   ++G
Sbjct: 377 EKRKAMLDELAMETLQEKSQHKEEXXXXXXXXARTRELETLQQTVEELQAQVHSMDG 433


>gi|225438791|ref|XP_002278379.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1068

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 16/142 (11%)

Query: 512 NNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSATTE 568
           + EL +L   L     E K F    E + Q   ++    E  K++ +Q RD  L    + 
Sbjct: 500 DKELNELNKRLEQKESEMKLFGGDTEALKQHFGKKIMELEEEKRIVQQERDRLLAEVESL 559

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEK------QIAQVTAKGEAEKTAILISILH 622
           A   D ++   Q +   ++ + L  Q  +++K      Q+ +   K + E T  L   + 
Sbjct: 560 AATSDGQRQKVQDVHA-QKLKALEAQILDLKKKQENQVQLLKQKQKSD-EATKRLQDEIQ 617

Query: 623 EVHIQIHQIE---SQEAMIEGF 641
            +  Q  Q++    QEA  E F
Sbjct: 618 SIKAQKVQLQHKIKQEA--EQF 637


>gi|167752231|ref|ZP_02424358.1| hypothetical protein ALIPUT_00473 [Alistipes putredinis DSM
          17216]
 gi|167660472|gb|EDS04602.1| hypothetical protein ALIPUT_00473 [Alistipes putredinis DSM
          17216]
          Length = 61

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 27 WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
              K N   G Y    P  +E TPSF  +  +  +Y F
Sbjct: 21 LHPTKDNPRYGLY--LSPLREEHTPSFKVDYVRNLWYDF 57


>gi|170109952|ref|XP_001886182.1| hypothetical protein LACBIDRAFT_307593 [Laccaria bicolor S238N-H82]
 gi|164638766|gb|EDR03041.1| hypothetical protein LACBIDRAFT_307593 [Laccaria bicolor S238N-H82]
          Length = 323

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 10/156 (6%)

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             L+ H   L+     L  +  ++ E  ++   L     E+K  + E     +    F +
Sbjct: 144 ARLLRHYNTLESAENILKCVISNHPEALQIQRELV----EEKKAMSETAAGGILNEEFRQ 199

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV--- 605
           L ++ +  ++                 +  ++     K+ +   R+ EE  +++A     
Sbjct: 200 LARKHEEDMKKLEEEMKEVIEERD--LKAEEELTEARKKLQAEMRRIEENSEKLASDYSA 257

Query: 606 -TAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             AK E +    + +   E      +IE+ E+ +EG
Sbjct: 258 ERAKFERQFQEQMEAARQEASDNQRKIENLESHLEG 293


>gi|193208522|ref|NP_741632.2| SMAll family member (sma-1) [Caenorhabditis elegans]
 gi|157888572|emb|CAB00130.3| C. elegans protein R31.1a, partially confirmed by transcript evidence
            [Caenorhabditis elegans]
 gi|157888583|emb|CAB04608.3| C. elegans protein R31.1a, partially confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 4166

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/294 (9%), Positives = 97/294 (32%), Gaps = 20/294 (6%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
             +     A  K    +          +  +       +    +  +    ++++  + + 
Sbjct: 1075 RKFDKLEADMKTNGGTQLKHINDIANDLISEGHGQSRKIEVRQHKINAMWDNLERLRKQR 1134

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                   +R+        +        +++  R+ +     Q L +       L  K + 
Sbjct: 1135 GVRLEATERVADFDTTCESAREWMLSKFEQLDRNPNDVKSLQNLERDLKP---LEDKIAA 1191

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
             E        +HP       +++A       EL+ L + L     E+     +   + + 
Sbjct: 1192 LEKLAAAVKKDHPEEAAAIERKIA-------ELRALHADLLRRAQEKMLLAEQTQGKEMF 1244

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK---EEIE 599
            E    +++  +++      +       ++ +  +  ++   L ++ +    +    +E+ 
Sbjct: 1245 ESALRDMIGWIEK--TRKVMMEDVHPVDVAEAEELLKKHYELGEQIKDKKYEVEYCQELG 1302

Query: 600  KQIAQVTAKGE--AEKTAILISI---LHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            +++ +   +     E+   L+S    L +++ +   I  Q+  ++ F + S R+
Sbjct: 1303 RRLLERNPRMSKVEEQLQNLVSEMASLRDLYRRRDTILKQQLDLQLFNRESERI 1356


>gi|157869030|ref|XP_001683067.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68223950|emb|CAJ04587.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 1764

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 43/131 (32%), Gaps = 5/131 (3%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQ--RLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            + + L + L  +   ++  L E      R  +     ++ +     + A        A 
Sbjct: 789 QQHRALRAALLEEVQRREQALEESCVAERRAHQEELQNVITREKEASQRALERLERQHAA 848

Query: 571 IVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH-IQ 627
                  +  ++            +Q E  E +  +   + +      L + +   H  Q
Sbjct: 849 AQRQVEAEAERRVRVGEDALAAREKQLEIAEAEWQRRRTEDKEASLQQLTAHVAAQHAKQ 908

Query: 628 IHQIESQEAMI 638
           + ++E QEA++
Sbjct: 909 LAELEEQEAIL 919


>gi|73969994|ref|XP_531770.2| PREDICTED: similar to GRIP and coiled-coil domain-containing 2
            isoform a [Canis familiaris]
          Length = 1814

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 90/278 (32%), Gaps = 29/278 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
              + A +KL  ++    +     +       + +++     +++  +  +KD   +    
Sbjct: 1010 QVEEASQKLCSKNETHEEEQIFAKELENLRLSLEQKEAELQNVRAQLLLLKDSLEKSPIE 1069

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
                  L++L +K      GY     K    +  K     +     +     +  +LRE 
Sbjct: 1070 NDQPSLLKELEEKI-----GYLEKESKEKEEKINKIKLVAVKAKKELDSSKKEAQTLREE 1124

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
                        L     E   +     +L +      +  +E      +   ++     
Sbjct: 1125 ------------LDSVRSEKDQLSTSMRDLIQGAESYKNLLLEYDKQSEQLDLEKERANN 1172

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
            F   ++ L RQ+R+         ++  D+    +    L    +LL  Q  E++K  A  
Sbjct: 1173 FEHHIEDLTRQLRNLTFQCEKLNSDNEDLLARIE---TLQSNVKLLEVQILEVQKAKAVA 1229

Query: 606  TAKGEAEKTAILI---------SILHEVHIQIHQIESQ 634
              + EAEK              + L E+ +Q+ + + Q
Sbjct: 1230 DKELEAEKLQKEQKIKEHASSINELEEIQLQLQKEKKQ 1267


>gi|15606545|ref|NP_213925.1| hypothetical protein aq_1345 [Aquifex aeolicus VF5]
 gi|2983773|gb|AAC07332.1| putative protein [Aquifex aeolicus VF5]
          Length = 234

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 75/226 (33%), Gaps = 13/226 (5%)

Query: 407 HLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              + +  ++D   +     + +R +L++  +      +   R+ ++    +++     +
Sbjct: 15  EAHSVVEKLEDPIKITEEGLRELRKQLKEAMEALAQVKASQIRFEREARNEKERAKALVK 74

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
             +S L++ +  K        L   LI    + ++  + L +      E+          
Sbjct: 75  KAESLLLQAQEGKISPEEAEKLAAELIQKAELHEKNARRLEEEAKRQREM---------A 125

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
              Q      ++     E     L  +L        +     + +  D     ++     
Sbjct: 126 VKLQAKIDELKVQIAKYEAELKTLKARLATARAVKKVNKQIAKVDPSDTIAMLERMKEKV 185

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI---SILHEVHIQI 628
           +    L++  EE+ KQ   +  + EAEK    +     L E+  ++
Sbjct: 186 EEEETLAQAYEELAKQEVALDVESEAEKKLKEVESKQKLEELKKRL 231


>gi|46138859|ref|XP_391120.1| hypothetical protein FG10944.1 [Gibberella zeae PH-1]
          Length = 1493

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 72/221 (32%), Gaps = 10/221 (4%)

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
              Y +    RL++L +K     +   +   +           QR ++    + + S   +
Sbjct: 915  QEYQRECETRLKELNEKIPQLDTKMQKIGLEIESAERNITDMQRRIKEVSREHQPSATDN 974

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE---QKYFLPEEIH 538
             R   L   +     + ++  +   +      E++ L + +     E    +    + I 
Sbjct: 975  SRITTLQKEIAK---LNRDIERLRGETSSVEEEIKTLQNKIMEVGGEKLRAQRTKVDAIK 1031

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALYKRFRLLSRQKE 596
            + +          ++ +   +        +   +  ++    +    L         + E
Sbjct: 1032 EEISSNNEEISNAEVRKVKAEKQKVKLEKDHAKSSKELAAASRDLEKLENDINNQGERAE 1091

Query: 597  EIEKQIAQVTA--KGEAEKTAILISILHEVHIQIHQIESQE 635
            E++ Q+A+       + ++   L + L E   ++++  + E
Sbjct: 1092 ELQAQVAEAEEGLATKKQELKALKAELDEKTDELNETRAME 1132


>gi|321265600|ref|XP_003197516.1| ER to Golgi transport-related protein [Cryptococcus gattii WM276]
 gi|317463996|gb|ADV25729.1| ER to Golgi transport-related protein, putative [Cryptococcus
           gattii WM276]
          Length = 1041

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 65/208 (31%), Gaps = 20/208 (9%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
            Q  +         G   +          P  R   S +        P      L     
Sbjct: 378 GQTPRVSRVSIGMGGTPARTRQSMGGLVTPRVRPRASGIGDMPPPPSPGNINRVLTA--- 434

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                ++   +E+ +++  N EL+        D         E++ +        +  ++
Sbjct: 435 ---RQVESLEEEIRELKRRNGELE-------EDLKRMPELRDEDVTEM---ETLRQETER 481

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALY----KRFRLLSRQKEEIEKQIAQVTAK 608
             +++        T++ N  D  +  ++  A +    +      ++  +++K++     +
Sbjct: 482 SRQELEFLKTQLETSDTNATDAVKILEELQAEHTAQQEELEEKLKEIGDLKKELKLAKER 541

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636
            E E  A   +   EV   + + ++ EA
Sbjct: 542 AEDELAANAEARKDEVQKMLERAQAAEA 569


>gi|282860238|ref|ZP_06269309.1| ATP-dependent chaperone protein ClpB [Prevotella bivia JCVIHMP010]
 gi|282586971|gb|EFB92205.1| ATP-dependent chaperone protein ClpB [Prevotella bivia JCVIHMP010]
          Length = 863

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 16/143 (11%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSA 565
            I   +    KL         +      +EI +RL +     E +K+ +   + A L   
Sbjct: 389 AIDLMDEAAAKLRME-----RDSVPEELDEITRRLKQLEIEREAIKRENDTEKIAVLDKD 443

Query: 566 TTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI------- 616
             E    +   R  ++    L  + +   +  E+++ +  +   +G  E+ A        
Sbjct: 444 IAELREQEHSFRAKWEGERELVNKIQQDKQSIEQLKYEAERAEREGNYERVAEIRYSKLK 503

Query: 617 -LISILHEVHIQIHQIESQEAMI 638
            L   + ++  Q+   +  EAM+
Sbjct: 504 ALEDDIRKIQEQLQSAQGAEAMV 526


>gi|224074785|ref|XP_002187761.1| PREDICTED: similar to fast myosin heavy chain HCII [Taeniopygia
            guttata]
          Length = 1943

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 89/277 (32%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  +L   +    +       +      ELE   K     ++D +      
Sbjct: 1356 EEEQEAKGEMQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1415

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1416 NAKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQKNFDKILAEWKQKYEETQAEL 1475

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+                  ++
Sbjct: 1476 EASQKESRSLSTELFKMKNAYEESLDHLETMKRENKNLQQ---------------EISDL 1520

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             +++ E+G  + + +L++  +      +  +A + +     +       R   L  +  +
Sbjct: 1521 TEQIAEQG--KAIHELEKVKKQIEQEKSEIQAALEEAEASLEHEEGKILR---LQLELNQ 1575

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1576 VKAEIDRKIAEKDEEIDQMKRNHLRVVESLQSSLDAE 1612



 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 26/268 (9%), Positives = 80/268 (29%), Gaps = 17/268 (6%)

Query: 376  VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             +    +D     + E       +    +E    +    I+ +       + +   L ++
Sbjct: 1574 NQVKAEIDRKIAEKDEEIDQMKRNHLRVVESLQSSLDAEIRSRNEALRLKKKMEGDLNEM 1633

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK-LSKKPSLREAALLLTLINH 494
              +    +       K     +     +Q  +  +L     L ++ ++ E          
Sbjct: 1634 EIQLSHANRVAAEAQKNLRNTQGVLKDTQIHLDDALRTQDDLKEQVAMVERRA------- 1686

Query: 495  PAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
              +LQ + +EL          +KL    L       +    +       ++     + Q+
Sbjct: 1687 -NLLQAEIEELRAALEQTERSRKLAEQELLDATERVQLLHTQNTSLINTKKKLETDIAQI 1745

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKG 609
              ++ D    +   E                 K+ +     L R K+ +++ +  +  + 
Sbjct: 1746 QGEMEDTIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLDQTVKDLQLRL 1805

Query: 610  EAEKTAIL---ISILHEVHIQIHQIESQ 634
            +  +   L      + ++  ++ ++E +
Sbjct: 1806 DEAEQLALKGGKKQIQKLEARVRELEGE 1833


>gi|195163205|ref|XP_002022442.1| GL13033 [Drosophila persimilis]
 gi|198469306|ref|XP_001354985.2| GA10507 [Drosophila pseudoobscura pseudoobscura]
 gi|194104434|gb|EDW26477.1| GL13033 [Drosophila persimilis]
 gi|198146808|gb|EAL32041.2| GA10507 [Drosophila pseudoobscura pseudoobscura]
          Length = 647

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEK 600
            E+   +  ++  +    A   +   +    D  +  Q+ +   +R           +E+
Sbjct: 384 EEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEEMERSQRDLLEAQEMIRRLEE 443

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Q+ Q+ A  +  +       L  +  ++ + ++ EA+
Sbjct: 444 QLKQLQAAKDELELRQ--KELQSMLQRLEEAKNMEAV 478



 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 95/273 (34%), Gaps = 7/273 (2%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K + ++     +           E+          +LE++  N    I+++K    +
Sbjct: 232 DQHKMSKDEWEQSIMTWWQEHRSMLREDAMMEYLKIAQDLEMYGVNYFE-IRNKKGTDLW 290

Query: 425 SQAIRDRLQQLFQKYI-TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                  L    Q    T   G+     +N    ++K   + + + +      + +  + 
Sbjct: 291 LGVDALGLNIYEQDDRLTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRIN 350

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  L L + NH   ++ +  +  D++    + ++  +    +  + +  L         +
Sbjct: 351 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQ 410

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           + + + LKQ+  ++  +       +  I  + +  +Q  A       L  +++E++  + 
Sbjct: 411 QEYEDRLKQMQEEMERSQRDLLEAQEMIRRLEEQLKQLQAA---KDELELRQKELQSMLQ 467

Query: 604 QVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
           ++      E      L   +    +++ +I+ +
Sbjct: 468 RLEEAKNMEAVEKIKLEEEIMAKQMEVQRIQDE 500


>gi|156553464|ref|XP_001599645.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 1324

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 84/275 (30%), Gaps = 31/275 (11%)

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
            E     S     +    +    S +      E    L       +         +   +
Sbjct: 734 MELHEQNSSLKKQLDNVEKHAEHSQDLTQITEEYTQRLSALERKFQQAIRERDALRKSLE 793

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           +++Q     ++         +K+   ++ +   ++L +  L    + KK   +E      
Sbjct: 794 QMRQEAATRLSSAEISNINAEKDEIIKELREEGEKLSKQQLQHSNIIKKLRAKEK----- 848

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL------CER 544
              + A+++ Q ++L +      EL++L   L     E+      E    L       E+
Sbjct: 849 --ENDALIKSQKEQLEE---QTTELERLKRSL--YAKEEVERSQIEAVHTLTAKCKKQEK 901

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIV----------DVRQGYQQALALYKRFRLLSRQ 594
               L +QLD        +  + +A             D  +  + A+        L+ Q
Sbjct: 902 EILSLTEQLDHVTNKMEAYKKSFDAAKSELLETKEKLTDAEEELKLAIENAGESHQLTAQ 961

Query: 595 KEEIEKQIAQVTAKG---EAEKTAILISILHEVHI 626
            E+++ ++ Q        E       + +L  +  
Sbjct: 962 VEDLKVKLRQAEESHIKKEKTLKQENMDLLKRLEA 996



 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 78/254 (30%), Gaps = 26/254 (10%)

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
             + + ++       +   + L +      +E          +       G       SS
Sbjct: 586 LADAMSEKTELTEIERHCAEVLPRENSPISSESRSDLVKIGSDQTSGHTSGDELETTTSS 645

Query: 471 LVK-----GKLSKKPSLREAALLLTLINHPAILQE------QYQELADIRYDNNE----- 514
            ++        S     R++   L L     +L +        +EL++I   +++     
Sbjct: 646 DIEIISSPNGDSSSTQSRQSPAKLLLCKSSDLLTKTLKTRGHSRELSEISIGSDDANLEI 705

Query: 515 ---LQKLWS--FLFSDFVEQ-KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
              L+++     +      +        +          + L  +++    +   +  TE
Sbjct: 706 ERLLRRIREMTEILEARESKLIEVSRINMELHEQNSSLKKQLDNVEKHAEHSQDLTQITE 765

Query: 569 ANIVDV---RQGYQQALALYKRFR-LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
                +    + +QQA+      R  L + ++E   +++         +   +I  L E 
Sbjct: 766 EYTQRLSALERKFQQAIRERDALRKSLEQMRQEAATRLSSAEISNINAEKDEIIKELREE 825

Query: 625 HIQIHQIESQEAMI 638
             ++ + + Q + I
Sbjct: 826 GEKLSKQQLQHSNI 839


>gi|119619673|gb|EAW99267.1| golgin-like protein, isoform CRA_d [Homo sapiens]
          Length = 763

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 90/287 (31%), Gaps = 27/287 (9%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +   +   +    K   +         +R          +  +     + + +  ++D+ 
Sbjct: 262 ERMWKMSVEARTLKEEKKRDIHRIQELERSLSELKNQMAEPPSLAPPAVTSVVEQLQDEA 321

Query: 420 LRYYYSQAIRDRLQQLFQKY--ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              +  Q +     +L  +       S   +  K+  + +++    Q   +    +    
Sbjct: 322 --KHLRQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQEAQRVREQERLCE 379

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           +   LRE             LQEQ + L          Q+L         E++    +E 
Sbjct: 380 QNERLREQQ---------KTLQEQGERLRKQE------QRLRKQEERLRKEEERLQKQEK 424

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALALYKRFRLLSRQKE 596
                E    +  ++L +Q     L      +  + + +  ++      K    L +Q +
Sbjct: 425 RLWDQEERLWKKEERLQKQEERLALSQNHKLDKQLAEPQCSFEDLNNEKKSALQLEQQVK 484

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI-------HQIESQEA 636
           E+++++ +V           L S    +H Q+        Q++ QEA
Sbjct: 485 ELQEKLDEVKEMQYMATYQQLTSEKEALHRQLLLQTQFVDQLQQQEA 531


>gi|118093420|ref|XP_421937.2| PREDICTED: similar to amyotrophic lateral sclerosis 2 [Gallus
           gallus]
          Length = 897

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 73/232 (31%), Gaps = 22/232 (9%)

Query: 417 DQKLRYYY--SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           D   +  Y  +  ++  L +  +             K+N    +Q    +  +  +L + 
Sbjct: 82  DNVEQKTYSDADMVKHLLAEKDRDLELAARIGQALLKRNHLLTEQNEALEEQLGQTLDQV 141

Query: 475 KLSKKPSLREAALLLTL----------------INHPAILQEQYQELADIRYDNNELQKL 518
              +    ++  LL  +                +            L      +  L++L
Sbjct: 142 NQLQHELSKKDDLLRIVSIASEESETDSSCSTPLRFNESFSVSQGLLQLDTLQDK-LREL 200

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGF-GELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
                +   +  +   E I     E+    + +++L +        +        ++ + 
Sbjct: 201 EEENLALRSKACHLKTETITYEEKEQQLVNDCVRELRQTNAQISRITEELSEKSEELVRY 260

Query: 578 YQQALALYKRFRLLSRQKEE--IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            ++  +L  +   L  + +E  IEK+  ++  +   +    L + LHE+  +
Sbjct: 261 QEEISSLLSQIVDLQHKLKEHVIEKEELKLHLQASKDAQRQLTAELHELQDR 312


>gi|261417102|ref|YP_003250785.1| chromosome segregation protein SMC [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|32452356|emb|CAD66598.2| SMC protein [Fibrobacter succinogenes]
 gi|261373558|gb|ACX76303.1| chromosome segregation protein SMC [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326426|gb|ADL25627.1| chromosome segregation protein SMC [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 1184

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 57/183 (31%), Gaps = 14/183 (7%)

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
             +     + +S     +LS++ +  E  + +    +     +  +  A +  +   LQ 
Sbjct: 318 SNEKAQGEIERSEQKSQELSEEKARLEEEIAVLGSEN-----DMDELNALLERERETLQV 372

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV----RDAGLWSATTEANIVD 573
           +   +     + +      +             +++D +V     +   W    E     
Sbjct: 373 MRDKVDDLRTQSRELSNARLQATNRVNSLRGRFERMDAEVNMLQSNIAKWQTEIEGLDKQ 432

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                     +       +R+ E +E+Q          E+     + L E   ++  +++
Sbjct: 433 KSDAEANIAEIQAGIEDTNREIENLEEQ-----RATREERLESERAELTEAQQKLQGLKN 487

Query: 634 QEA 636
           +EA
Sbjct: 488 EEA 490


>gi|67526897|ref|XP_661510.1| hypothetical protein AN3906.2 [Aspergillus nidulans FGSC A4]
 gi|40739647|gb|EAA58837.1| hypothetical protein AN3906.2 [Aspergillus nidulans FGSC A4]
 gi|259481523|tpe|CBF75123.1| TPA: M protein repeat protein (AFU_orthologue; AFUA_6G08660)
           [Aspergillus nidulans FGSC A4]
          Length = 1157

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 76/234 (32%), Gaps = 27/234 (11%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  +    + +R  LQ   +          R  +++ R        +     S +    S
Sbjct: 412 EAEKASALEELRGELQAEIESLKQSKDEAVRAAEESTRQSIAALEDKITSLQSQLTAAES 471

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                +E            +               +EL++      ++  +      +++
Sbjct: 472 ATTQGQEETAAQLAAKENEV---------------SELRQAVDAARAELEQAGERAAKDL 516

Query: 538 HQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             +L   E G  + + +L  Q  +A   +A++ A+ +   +   ++ +        +++ 
Sbjct: 517 EAKLKALEAGHEDAIAKLKAQHDEALASAASSHASELANAKAATESSSSAH-----AQEL 571

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ-----EAMIEGFGKM 644
           EE+   + +V     +E  A   + L  +  ++   E       +A+ EG    
Sbjct: 572 EELRASLDKVKEDAVSELQATHQAELQSLQQRLDDAEQSLQTTRQALEEGANAA 625



 Score = 37.2 bits (84), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           ++   +     A+ E  +  +R   ++A A  KR  +  +  + +E       ++G+ + 
Sbjct: 297 EQHATEISQLVASHEEQLQALRAQLEEAEA--KRKEIEEKSLKALEDASQAAASQGDEKL 354

Query: 614 TAILISILHEVHIQIHQIESQEAM 637
           +A L  +      Q+  +ES+ A 
Sbjct: 355 SAALDELKRSHQAQLEALESELAA 378


>gi|328950730|ref|YP_004368065.1| SMC domain protein [Marinithermus hydrothermalis DSM 14884]
 gi|328451054|gb|AEB11955.1| SMC domain protein [Marinithermus hydrothermalis DSM 14884]
          Length = 1081

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 73/234 (31%), Gaps = 33/234 (14%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           ++ +   L+ L +              +     D +       + + +K +  +  +   
Sbjct: 673 AEELARELKALERALAHTTLPEVPPAPEPVPEPDPRPLEALRERVAALKDEAGRLEAAAA 732

Query: 485 AALLLT--LINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQR 540
                     ++ A+L+    + A  +     L+ L + L        Q     +   Q 
Sbjct: 733 RWEAYRREAAHYRALLERFEADQARAQEAMARLETLRAELEQLEAEHAQLAADLDRARQA 792

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA----LALYKRF-------- 588
           + E       +++  Q ++     A  EA +  + +   QA    L L +R         
Sbjct: 793 VDELDLEAAARRVQAQRQEVERLLAEEEATVRRLSETLTQADEHRLTLARREATLEAVRA 852

Query: 589 ---------------RLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVH 625
                          R L R+  +IE++I+++       +   A L + +  + 
Sbjct: 853 EAAALPPGEAAEGTYRTLQRRLAQIEREISEMGPVNHRAEHAHAQLAAEVERLK 906


>gi|322490069|emb|CBZ25331.1| putative kinesin [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1052

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 84/240 (35%), Gaps = 13/240 (5%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D +        + DR +   +    + + Y  Y  K    +     ++   +        
Sbjct: 364 DPQQAKQDGCDLSDRWRD--EYLRKKEALYAEYQLKGTIEKLLARIAELEARLRECADDE 421

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYD--NNELQKLWSFLFSDFVEQKYFLP 534
                  E   L   +          +++    +    +EL++L + +     E +  + 
Sbjct: 422 LALHLTTEVETLQKALTEADYQMGLQRQILYGEFLMLEDELRELNTKMQEMKEEHEEAME 481

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSR 593
             + +      F E+ +  + ++R     S  T A   D     ++ +A L +R      
Sbjct: 482 GLLGEEAGR--FEEMKRGYETRLRALQSESDATLAASTDEIAALRRLVAELQERLAAKET 539

Query: 594 QKEEIEKQIAQVTAKGEAEKTA------ILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
           +  ++  +++ + AK +A+  A       L + L E+  +  + + Q AM+E   + S R
Sbjct: 540 ECADLADRLSALQAKYDADTCASQRVRSELEAQLEELRNRSEERDEQLAMVEAQLEESER 599


>gi|317026700|ref|XP_001399378.2| dynactin [Aspergillus niger CBS 513.88]
          Length = 1232

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 55/153 (35%), Gaps = 14/153 (9%)

Query: 498 LQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            +E  +ELAD       ++ +L + +      ++     E +    E+   E +   D  
Sbjct: 528 AEEMIEELADKNIRYQEDINELKAAIEDLEALKEINDELEYNHIETEKQLQEEIDYKDGL 587

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
             +     A  +  I D+     +   L    +          +QI++  A   + ++  
Sbjct: 588 FTEQSRRLAQQDEVIEDLEYTLVRFRELVSTLQGDLEDMR-ASQQISEAEATDLSTRSRA 646

Query: 617 LI------------SILHEVHIQIHQIESQEAM 637
           ++            +    + I+++++E++EA 
Sbjct: 647 MMDLNLKLQASVSKAQTKTIDIELNRMEAEEAA 679


>gi|296238783|ref|XP_002764305.1| PREDICTED: myosin-9-like, partial [Callithrix jacchus]
          Length = 639

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 100/273 (36%), Gaps = 9/273 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       ++ +V  +  ++   + E +  S      +        +  +  K+Q     
Sbjct: 189 RDEQSEEKQQQLVRQVREMEAELEDERKRHSMAVAARKKLEMDLEAHIDSANKNQDEAIE 248

Query: 424 YSQAIRDRLQQLFQKY---ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
             Q  R ++    ++               K+N R+          ++  L   + +K+ 
Sbjct: 249 QLQKWRAQVNDCTRELDDTRASCEEILAQAKENERNLKIMEAQMIQLEEELAAAECAKRQ 308

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           + +E   LL +++H   +    ++L   ++D    ++    + + + E++     E  ++
Sbjct: 309 AQQERDDLLVVLDHQRQMACHLEKL-QQKFDQLLAEE--KTISAKYAEERDRAEAEAQEK 365

Query: 541 LCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             +       LK+   Q  +    +      + D+     +++   K  RLL +Q +E++
Sbjct: 366 ETKALSLARALKEAMEQKVELERLNKQFRVEMEDIMSSKGKSVHELKSRRLLEQQVDELK 425

Query: 600 KQIAQVTAKGEAEKTAILISI--LHEVHIQIHQ 630
            Q+ ++  + +  + A L     L  + IQ  +
Sbjct: 426 TQLEELEDELQDTENANLQLEVNLQAMKIQFER 458


>gi|268316211|ref|YP_003289930.1| chromosome segregation protein SMC [Rhodothermus marinus DSM 4252]
 gi|262333745|gb|ACY47542.1| chromosome segregation protein SMC [Rhodothermus marinus DSM 4252]
          Length = 1185

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 63/215 (29%), Gaps = 23/215 (10%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + + +RLQ    +             +  R R     ++  ++ ++ +          EA
Sbjct: 305 RLLDERLQAARSEQERLQREAKEAEHQEQRLRQALEAAETAVREAMPR------HEAAEA 358

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-YFLPEEIHQRLCER 544
           AL   L             L   R    E ++L         E +     +   + L E+
Sbjct: 359 ALRQAL----EARDAAQHALEQQRERVREARRLLQQAEQTLHEARRQLDRQSNRRELLEQ 414

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               L  +               E  +   +   Q    L K    L  +++ + ++IA 
Sbjct: 415 ERERLDAEQKTLDAQLQTLETEQEETLRKRKTARQTCERLRKEIEALEARRQALRQEIAA 474

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                           LH    ++  ++++  ++E
Sbjct: 475 RNEA------------LHRRERRLEAVQAEARLLE 497


>gi|303320001|ref|XP_003070000.1| Viral A-type inclusion protein repeat containing protein
            [Coccidioides posadasii C735 delta SOWgp]
 gi|240109686|gb|EER27855.1| Viral A-type inclusion protein repeat containing protein
            [Coccidioides posadasii C735 delta SOWgp]
          Length = 2416

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 84/253 (33%), Gaps = 23/253 (9%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
             ++R  L   +      I    ++ +       RL +     I + + +     K++   
Sbjct: 858  EEQRDTLIREIMTRFQSIARGYVQRHLINK---RLYRAEASRIIQRNFHLYLNLKSSPWW 914

Query: 458  D---QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
                   P     +S+    K  +K    EA              ++ +   D R  + E
Sbjct: 915  TLFMNMKPLLGETRSASEVKKRDEKIQQLEAKA-------KQDFADRQKLEEDRRRADAE 967

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLC------ERGFGELLKQLDRQVRDAGLWSATTE 568
            +Q++   L S          EEI +RL              +   +          A  +
Sbjct: 968  MQRIKKTLES--ERALALDKEEIFKRLQLREVELTEKLAGAIADQESLEDQIDELIAAKK 1025

Query: 569  ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS--ILHEVHI 626
                D+     Q     +    L ++K+E+  +I+++  + +A +T        +H+++ 
Sbjct: 1026 KTEEDLDLRRSQLDQAAQLMGRLEKEKKELHGRISELDDELKAVETTHQQRDSEIHKLNQ 1085

Query: 627  QIHQIESQEAMIE 639
            +I  + S  ++ E
Sbjct: 1086 EIKVLNSHLSLKE 1098


>gi|296807506|ref|XP_002844217.1| mitotic cohesin complex subunit Psm1 [Arthroderma otae CBS 113480]
 gi|238843700|gb|EEQ33362.1| mitotic cohesin complex subunit Psm1 [Arthroderma otae CBS 113480]
          Length = 1281

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 72/233 (30%), Gaps = 23/233 (9%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           ++  Q  +T       Y +      ++   S+        +   S +P  RE + LL  +
Sbjct: 729 EESLQGQLTGLEQRLAYSRDELSALEKNLESKSSEVDFAKRQMKSVQPKYREKSALLESL 788

Query: 493 NHPAILQEQYQELADIRYDNNELQKL-----WSFLFSDFVEQKYFLPEEIHQRLC----- 542
                ++E    + ++   +   +       +  +     +Q     E   ++L      
Sbjct: 789 --DQSIKEIQSSVTEVE--DKVYRDFCKRLGYKNIQEYDAQQGSLQQEAAEKKLQFTTQK 844

Query: 543 ---ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
              E       ++L             ++ +   V     +  ++ +R   L+++   + 
Sbjct: 845 TKIENQLSFEKQRLQATEMRIDSLKTQSQRDETMVADLEAERRSIQERLNELNQELTSLN 904

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK-----MSGR 647
            ++ +       E T  L     E+  +   +E+    I G         SGR
Sbjct: 905 DRLEEQQNLFN-ESTERLAQQRRELQRRSKNVEATLKTISGLEADVQRHSSGR 956


>gi|219841904|gb|AAI44345.1| TAOK2 protein [Homo sapiens]
          Length = 1122

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           +R A+L+   I          ++L+  +    + QK    L S    ++      + + L
Sbjct: 469 IRTASLVSRQIQEHEQDSALREQLSGYKRMRRQHQKQLLALESRLRGEREEHSARLQREL 528

Query: 542 CE--RGFGELLKQLDRQVRDAGLWSATTEANIVD---------VRQGYQQALALYKRFRL 590
                GFG   ++L R+ +  G   A                  ++     L   KR   
Sbjct: 529 EAQRAGFGAEAEKLARRHQAIGEKEARAAQAEERKFQQHILGQQKKELAALLEAQKRTYK 588

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           L  +KE++++++ +  +  + EK       L     Q+ Q +++E
Sbjct: 589 L--RKEQLKEELQENPSTPKREKAE----WLLRQKEQLQQCQAEE 627


>gi|195342186|ref|XP_002037682.1| GM18169 [Drosophila sechellia]
 gi|194132532|gb|EDW54100.1| GM18169 [Drosophila sechellia]
          Length = 990

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 85/270 (31%), Gaps = 28/270 (10%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-----DQKLRYYYSQAIRDR 431
           +     + L++ E +       + +   ++      + ++      ++ +  Y   I  +
Sbjct: 414 QRQQEKEYLYRTELKQAEEKILEVQLRAKLKFCELESQLRAKDEESKQAQEAYRMEISHK 473

Query: 432 LQQLFQKYITEHSGYGRYWKKNAR-HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           L    +   T          +  +   D++G  + L++   +      + + RE  L+  
Sbjct: 474 LALKQEHLRTAEQKIQELQTRLQQVETDEQGHREELIRKENIHAARLAEANQREQDLI-- 531

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR-------LCE 543
                  ++   +EL  ++  N E  +         + Q       I  +       L +
Sbjct: 532 -----DRVKSLTKELNTLK-ANKEHNE-RDLRDRLALSQDEISVLRISSQRRSPCASLPD 584

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
               E L +L  +           +A I  + +     +   +    LS +   +E Q  
Sbjct: 585 NASAE-LNRLTSEADSLRCVLELKQAEISALSKAKADLIHESEERLKLSNRVALLEAQ-N 642

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++       KT        E+  ++ +++ 
Sbjct: 643 EMMRTELEAKTEKE----KEIQQKMEELQK 668


>gi|167537151|ref|XP_001750245.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771235|gb|EDQ84904.1| predicted protein [Monosiga brevicollis MX1]
          Length = 5349

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 46/403 (11%), Positives = 124/403 (30%), Gaps = 27/403 (6%)

Query: 251  FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310
                   +    R     +     I +    D  ++     +  ++ +G          +
Sbjct: 2865 LDEHGASVASGNRALRVESKLPHFICLSSSDDSSAVTIYTFKEGITRIGNPNDPLVEDDI 2924

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDL-------VLCHLIPGNRVNFVLLSRGEDPDSFI 363
                P   +  DG+      A    +L        L  ++  + +  + L  GED +  +
Sbjct: 2925 ----PEQDIMLDGEGAEAEHAIVEFNLELDAEANCLVEMVRLHPIGELCLVNGEDMEDSM 2980

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R       +             +   TE R       +      +   +    D+     
Sbjct: 2981 RLRHGDLIQLGEEN-----LFRFNHPTEARRLKKHKGKGRKAHSVVKMMARKHDKLSPEQ 3035

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              + +R +L    Q  I          ++ AR   ++  ++       ++    +     
Sbjct: 3036 -IETMRSQLDAEKQAEIARLQALREAAEQEAREEMERKAAETERLKQEMEQMRLQYEKQM 3094

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            +  +             Q ++    + +   + +++ + + +   E++  +  ++   L 
Sbjct: 3095 QEQMAAERERQERERHNQAKKAEADQRERELDRERIQAEMEARLREREEEMRAKLKAELA 3154

Query: 543  ERG-----FGELLKQLDRQVRD--AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +         E ++Q ++ +R+  A L   T++   ++     ++ L   +    L+ + 
Sbjct: 3155 DTATEKHQAQEHVRQAEQAMREREAQLAKLTSQLKQMETETAQERELREQRHQVELAERA 3214

Query: 596  EEIEKQIAQVTAKGEAEKTAILISIL-HEVHIQIHQIESQ-EA 636
             E E+Q+       E E    L + L         Q+++  EA
Sbjct: 3215 AEQERQLRAELESREQEHERELQAELARREEENRQQLQATLEA 3257


>gi|86607326|ref|YP_476089.1| hypothetical protein CYA_2718 [Synechococcus sp. JA-3-3Ab]
 gi|86555868|gb|ABD00826.1| conserved domain protein [Synechococcus sp. JA-3-3Ab]
          Length = 330

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 78/237 (32%), Gaps = 23/237 (9%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           ++ A     ++     I++       S+    R +++ Q        +    ++NA    
Sbjct: 19  EQTAANSREIQELRQAIRESH--AELSEQNAARSREIEQLRQAIRESHAELSEQNAARSR 76

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +    ++ ++ S  +         RE   L   I      +   +        + E+++L
Sbjct: 77  EIEQLRQAIRESHAELSEQNAARSREIEQLRQAIR-----ESHAELSEQNAARSREIEQL 131

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
              +     E                     ++QL + +R++    +   A      +  
Sbjct: 132 RQAIRESHAELSEQNAAR----------SREIEQLRQAIRESHAELSEQNAARSREIEQL 181

Query: 579 QQALA-----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +QA+      L ++    SR+ E++ + I +  A+   +  A     + ++   I +
Sbjct: 182 RQAIRESHAELSEQNAARSREIEQLRQAIRESHAELSEQNAAR-SREIEQLRQAIRE 237



 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 83/269 (30%), Gaps = 24/269 (8%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R     A       +        ++          ++ A     ++     I++      
Sbjct: 9   RVEQLLAQAAEQTAANSREIQELRQAIRESHAELSEQNAARSREIEQLRQAIRESH--AE 66

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            S+    R +++ Q        +    ++NA    +    ++ ++ S  +         R
Sbjct: 67  LSEQNAARSREIEQLRQAIRESHAELSEQNAARSREIEQLRQAIRESHAELSEQNAARSR 126

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E   L   I      +   +        + E+++L   +     E               
Sbjct: 127 EIEQLRQAIR-----ESHAELSEQNAARSREIEQLRQAIRESHAELSEQNAAR------- 174

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-----LYKRFRLLSRQKEEI 598
                 ++QL + +R++    +   A      +  +QA+      L ++    SR+ E++
Sbjct: 175 ---SREIEQLRQAIRESHAELSEQNAARSREIEQLRQAIRESHAELSEQNAARSREIEQL 231

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            + I +   +  A+  A  +  L EV  +
Sbjct: 232 RQAIRESYEQNVAQ--AQGLRDLQEVVRE 258



 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 67/216 (31%), Gaps = 29/216 (13%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             L+Q  ++   E S       +      Q         S     +  +   LR+A    
Sbjct: 29  QELRQAIRESHAELSEQNAARSREIEQLRQAIRESHAELSEQNAARSREIEQLRQA---- 84

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                  I +   +        + E+++L   +     E                     
Sbjct: 85  -------IRESHAELSEQNAARSREIEQLRQAIRESHAELSEQNAAR----------SRE 127

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-----LYKRFRLLSRQKEEIEKQIAQ 604
           ++QL + +R++    +   A      +  +QA+      L ++    SR+ E++ + I +
Sbjct: 128 IEQLRQAIRESHAELSEQNAARSREIEQLRQAIRESHAELSEQNAARSREIEQLRQAIRE 187

Query: 605 VTAKG---EAEKTAILISILHEVHIQIHQIESQEAM 637
             A+     A ++  +  +   +     ++  Q A 
Sbjct: 188 SHAELSEQNAARSREIEQLRQAIRESHAELSEQNAA 223



 Score = 37.2 bits (84), Expect = 10.0,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 66/199 (33%), Gaps = 23/199 (11%)

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
            +  ++ A +  +    ++ ++ S  +         RE   L   I      +   +   
Sbjct: 15  AQAAEQTAANSREIQELRQAIRESHAELSEQNAARSREIEQLRQAIR-----ESHAELSE 69

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
                + E+++L   +     E                     ++QL + +R++    + 
Sbjct: 70  QNAARSREIEQLRQAIRESHAELSEQNAAR----------SREIEQLRQAIRESHAELSE 119

Query: 567 TEANIVDVRQGYQQALA-----LYKRFRLLSRQKEEIEKQIAQVTAKG---EAEKTAILI 618
             A      +  +QA+      L ++    SR+ E++ + I +  A+     A ++  + 
Sbjct: 120 QNAARSREIEQLRQAIRESHAELSEQNAARSREIEQLRQAIRESHAELSEQNAARSREIE 179

Query: 619 SILHEVHIQIHQIESQEAM 637
            +   +     ++  Q A 
Sbjct: 180 QLRQAIRESHAELSEQNAA 198


>gi|306828120|ref|ZP_07461383.1| replicative DNA helicase DnaB [Streptococcus pyogenes ATCC 10782]
 gi|304429657|gb|EFM32703.1| replicative DNA helicase DnaB [Streptococcus pyogenes ATCC 10782]
          Length = 448

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 53/178 (29%), Gaps = 12/178 (6%)

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           K+       E A+L ++  +P  + E  + L    +     + L+  + S     +    
Sbjct: 5   KILPHDIQTEQAVLGSIFINPEKIIEVAEYLKPDDFYKPAHRILFKAMLSISSNAEPIDV 64

Query: 535 EEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVD-VRQGYQQAL- 582
             +   L  +             E++  +              +   +  +      ++ 
Sbjct: 65  VTVKSVLESQDNLVAIGGITYLLEVVNAVPTSAHAENYAKIVAKKAQLRSIIGNLSDSIG 124

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             Y     +     + E+ + +V+          +  +L E + +I +  +    I G
Sbjct: 125 NAYDENMDIDEIIAKTERSLIEVSQSSNKSSFRPIHDVLAENYQKIEERSNNNTQITG 182


>gi|293341818|ref|XP_002725035.1| PREDICTED: coiled-coil domain containing 157-like [Rattus
           norvegicus]
 gi|293353252|ref|XP_001062582.2| PREDICTED: coiled-coil domain containing 157 isoform 2 [Rattus
           norvegicus]
          Length = 719

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 23/136 (16%)

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                      R       +   ++D  VR      A     +  +    Q+   L    
Sbjct: 413 AGRLDGASQQIRWASTELDKEKARVDSMVRHQESLQAKQRTLLQQLDCLDQEREELRGNL 472

Query: 589 RLLSRQKEEIEKQIAQVTAKGE---------AEKTAILISILH--------------EVH 625
                Q+ E+E+Q+  + ++ E          E    L                   E+ 
Sbjct: 473 DEAEVQRSELEEQLQSLQSEREQGQCQLQAQQEVLQSLQQEKQDLEQVITDLQLTISELQ 532

Query: 626 IQIHQIESQEAMIEGF 641
            Q+ +++ +E ++  F
Sbjct: 533 QQLEELKERERLLVAF 548


>gi|242018364|ref|XP_002429647.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212514632|gb|EEB16909.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 538

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/339 (10%), Positives = 96/339 (28%), Gaps = 36/339 (10%)

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-----RVNFVLLSRGEDPD 360
           +   L +    +     GD       +K   L+              +++      +DP 
Sbjct: 182 ECEPLKEGISELYHTLIGDIIKKGNLFKKGYLLPTFREYWFVLQTTELSYYKTRDEKDPC 241

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             I    ++  +         +  +     E        +       +      I +   
Sbjct: 242 GCIALCSESRVDPSPYSGKDKLHRILIHSMERTFELATIDHKTRLQWISAIQLAINNSGG 301

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
              Y      R+Q + ++     +G  +  ++ +R   Q    +   Q    + +     
Sbjct: 302 NESY-----QRIQAM-RRRAQRIAGTLKIEEEVSRQNSQIKEMESTKQKLKEEIEARVAA 355

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             +               +E    L + +    EL  + + L     E+     +     
Sbjct: 356 DQK--------------AKELQDSLEEQQKRAKELIAIRNKLEKLLEEETQSKRD----- 396

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                  E+++ L  +V             + D ++   +     +      ++++E + 
Sbjct: 397 ------EEIVRNLQARVLREEWEKREELERLQDEQKKMLEEEREKRVEFERLQREKEEQL 450

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + AQ+  +   E+   L   L+    +I   E  + ++E
Sbjct: 451 KDAQIRLQALEEERQALDQELNAAREKILSSERSKEILE 489


>gi|194769276|ref|XP_001966732.1| GF19124 [Drosophila ananassae]
 gi|190618253|gb|EDV33777.1| GF19124 [Drosophila ananassae]
          Length = 646

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEK 600
            E+   +  ++  +    A   +   +    D  +  Q+ +   +R           +E+
Sbjct: 383 EEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEEMERSQRDLLEAQEMIRRLEE 442

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Q+ Q+ A  +  +       L  +  ++ + ++ EA+
Sbjct: 443 QLKQLQAAKDELELRQ--KELQSMLQRLEEAKNMEAV 477



 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 95/273 (34%), Gaps = 7/273 (2%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K + ++     +           E+          +LE++  N    I+++K    +
Sbjct: 231 DQHKMSKDEWEQSIMTWWQEHRSMLREDAMMEYLKIAQDLEMYGVNYFE-IRNKKGTDLW 289

Query: 425 SQAIRDRLQQLFQKYI-TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                  L    Q    T   G+     +N    ++K   + + + +      + +  + 
Sbjct: 290 LGVDALGLNIYEQDDRLTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRIN 349

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  L L + NH   ++ +  +  D++    + ++  +    +  + +  L         +
Sbjct: 350 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQ 409

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           + + + LKQ+  ++  +       +  I  + +  +Q  A       L  +++E++  + 
Sbjct: 410 QEYEDRLKQMQEEMERSQRDLLEAQEMIRRLEEQLKQLQAA---KDELELRQKELQSMLQ 466

Query: 604 QVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
           ++      E      L   +    +++ +I+ +
Sbjct: 467 RLEEAKNMEAVEKAKLEEEIMAKQMEVQRIQDE 499


>gi|156394005|ref|XP_001636617.1| predicted protein [Nematostella vectensis]
 gi|156223722|gb|EDO44554.1| predicted protein [Nematostella vectensis]
          Length = 348

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           E+ +L     S F E+  F   E   +  E     +L +  +    A   ++ TE ++ +
Sbjct: 95  EMHELVHEKSSCFAEEGPFNEVEYFLQFAESELDAILNEW-QDKPAAHDLTSKTEKDLKE 153

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++    +A  + ++   L + K  +EK + +     + ++       L  V  Q+++   
Sbjct: 154 MKIALDRAKEIKEKCEELKQCKILLEKDLKRSETGADCKEKGR--EELENVEKQLNERGR 211

Query: 634 QEAMIEG 640
            EA ++G
Sbjct: 212 NEAAVKG 218


>gi|114600694|ref|XP_001151748.1| PREDICTED: retinoic acid induced 14 isoform 7 [Pan troglodytes]
          Length = 951

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 101/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 565 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 622

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 623 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLIQLTNVSRAKAEDALSEMKSQYSKVLN 682

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 683 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 741

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 742 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 801

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 802 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 839


>gi|32709409|gb|AAP86965.1| unknown [Phytophthora sojae]
          Length = 882

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 82/225 (36%), Gaps = 15/225 (6%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           +    +L ++  KY        + + +N   + +K P     Q    + +   +    + 
Sbjct: 4   EDFNSQLWRMAAKYEARLGEMEQKFGQNNCQKKEKSPEIEDNQREEEEEEEDHEEGEEDG 63

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
              L L+N    L    Q+             L        +E  +   +    ++ +  
Sbjct: 64  VEKLALLNKLHSLTATVQQQTQTMLAQQAAFALQKGELETRLEDAHHALQTEKSKVADAV 123

Query: 546 FGELLKQLDRQVRDAGLWSATTEAN-IVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIA 603
             +   + + +  +  +     E + + + ++  +  LA + +    L +Q +E E++ A
Sbjct: 124 LEQQAAKENYEFLETQVEILKDEKSKLQEEKEKVEAKLATHAQTGSILKQQLQEKEEERA 183

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           ++ ++ E            E+ +Q+   E  +A++   G++S R+
Sbjct: 184 KLESEVEE----------RELKLQLEHEEKIDALV---GELSQRV 215


>gi|73980495|ref|XP_866296.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 10 [Canis
           familiaris]
          Length = 1289

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 83/239 (34%), Gaps = 15/239 (6%)

Query: 422 YYYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            Y  + + ++  +L    +           +     +  +  +Q L      + +L ++ 
Sbjct: 370 SYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEEL 429

Query: 481 SLREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEI 537
           S  E+ +        A L  +E  + L D   +  E +++L   +       +     + 
Sbjct: 430 SQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQE 489

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           + R  E    E L     +VR+A       +  + D +Q  ++   L    + ++R+   
Sbjct: 490 NARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTN 549

Query: 598 IEKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645
            ++   +   +   E      K A   +    + +++ Q+E  +A     ++  F   S
Sbjct: 550 QQEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 608



 Score = 37.6 bits (85), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594
            E G    ++ L+ ++    L  A  +A + ++ +   Q          + ++   L R+
Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275

Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639
            +E  K+  +       E+    ++       +  +  ++ +  ++      EA+ E
Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330


>gi|324500000|gb|ADY40014.1| 227 kDa spindle- and centromere-associated protein [Ascaris suum]
          Length = 1854

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/312 (9%), Positives = 98/312 (31%), Gaps = 34/312 (10%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLW--KRETENRSFNTPDERAELEIHLKNCINH 414
            D     + + +  ++  I+E    +D L    +  +       D+   LEI   + +  
Sbjct: 407 LDDAEAQKRHIEDEYKTRIMELTRRIDTLVDDNKRLKGDLTGVKDKYRNLEIEYTSTLRK 466

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           I ++         +R  L +  +            +     + D    S   ++ ++ + 
Sbjct: 467 IDEKDQALRNLDELRQDLLKDLENQRARFDALTSEFDHLQANFDSTSRSTVSIEMTVKEI 526

Query: 475 KLSKKPSLREAALLLT----LINHPAILQEQYQELADIRYDN-NELQKLWSFLFSD---- 525
           K  +    ++   L      +++   I  ++ +++      +  E++KL + +       
Sbjct: 527 KQQRDEISKQRDDLARQLTDVMHKLEIEIKKREDIEKANLLHIGEIEKLKAQITEYESQV 586

Query: 526 ---FVEQKYFLPE---------EIHQRLCER-----GFGELLKQLDRQVRDAGLWSATTE 568
                       +          +   L           EL  +L ++  +       ++
Sbjct: 587 MMLRRHNDELDTQLKTTMAKITTLENSLTSAQNEITKLSELNSKLQKEKNEIMSLKQKSD 646

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG------EAEKTAILISILH 622
             +  +++  ++     ++    +R   E E++  Q   +          +     + + 
Sbjct: 647 MEVDALKERVRKLEKEMEKIESENRTLRESEEKARQAYKEEVNKVHQLERELQEAKAEID 706

Query: 623 EVHIQIHQIESQ 634
           E+  ++  ++ +
Sbjct: 707 ELRRRLAALDQE 718



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 86/272 (31%), Gaps = 27/272 (9%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK---------LRYYYSQA 427
            S    +       + +S    D   E    L+  +  I+ +           R  Y + 
Sbjct: 628 NSKLQKEKNEIMSLKQKSDMEVDALKERVRKLEKEMEKIESENRTLRESEEKARQAYKEE 687

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP--SQRLMQSSLVKGKLSKKPSLREA 485
           + +++ QL ++     +      ++ A    +        L      K  + +   + E 
Sbjct: 688 V-NKVHQLERELQEAKAEIDELRRRLAALDQENKERLESALRGRGGDKSDIYESTQITE- 745

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCER 544
                 I    +  +   +L  +  + +EL +    L  +  E Q+    ++      +R
Sbjct: 746 ------IRVKELGDKHRLDLERLENERDELARRVQLLEDELAEKQRIIDRQKTDIEDLKR 799

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-----LYKRFRLLSRQKEEIE 599
            +   + +L  ++ +          +  D  Q   +AL      L  +  LL ++ EE  
Sbjct: 800 QYQAEIDRLKAELVNLETKYQNELEDERDQHQHEIEALKAAEDDLRNKISLLEKKLEEAL 859

Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIH 629
            +   +  +     EK   L   L  V  ++ 
Sbjct: 860 NREKNLEKEILDWEEKYETLNKELQRVRDELE 891


>gi|322706718|gb|EFY98298.1| nuclear segregation protein (Bfr1), putative [Metarhizium
           anisopliae ARSEF 23]
          Length = 478

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 69/208 (33%), Gaps = 8/208 (3%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            +   +  +      +      +K+ +    +  + +      +  K   +P+  +    
Sbjct: 17  AESQARPTRPDEKAFNEALAKAEKDHKASMDRLNAIKAKIDIALPNKNKDQPNPTQKRRQ 76

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +     I Q+Q    +      +++++L   + S   EQK    +             
Sbjct: 77  ELIAQANEIRQKQAGGKSARTTKLDQIKRLDEQVRSRIAEQK--TAKAKVSFKSAEDVDR 134

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDV------RQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +  L++QV    +     +  + DV      R+ + Q     K+   L  + +EI+  +
Sbjct: 135 QIAALEKQVNSGTMKLVDEKKALSDVSNLRKVRKNFGQFDDSQKQIDDLRAKIKEIKDSM 194

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQ 630
                K  +E+   + + L  +  +  +
Sbjct: 195 EDPEQKALSEQYNKIQAELDTIKAEQDE 222


>gi|313233229|emb|CBY24344.1| unnamed protein product [Oikopleura dioica]
          Length = 1054

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 66/170 (38%), Gaps = 11/170 (6%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            +L    +S  P  RE   L +L+ +  ++Q   ++L +    +  L  L S +     +
Sbjct: 357 KALPFFDISLDPMNREK--LKSLLQY-IVVQMFPEDLQEF---SESLGILVSEVARAEKQ 410

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
           +K  + +E+ + L E G      ++D Q  D      T +     + +   +   +  R 
Sbjct: 411 RKNDIVKELVEVLREEGS----TKIDSQPADDESQPNT-QITDEQLEELRNEIGEVQMRI 465

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
             L  Q+ +  ++     A    E      + L E+ I+ +Q +   A I
Sbjct: 466 HQLENQQRDAIEEKNFSEASRLEEAIKPHKAELQELQIRKNQTKRLPATI 515


>gi|309359375|emb|CAP33058.2| CBR-LFI-1 protein [Caenorhabditis briggsae AF16]
          Length = 2488

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/315 (10%), Positives = 98/315 (31%), Gaps = 44/315 (13%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +     A      ++   ++    +   +   +T D+  +L   +    N I+++     
Sbjct: 718  KLRASEAERVAAEKARKFLEDELAKLQASFQKSTTDDARKLRDEMDEHTNSIQEEFKTR- 776

Query: 424  YSQAIRDRLQQLFQK---------YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
                +  R++ L ++          + +          + + R ++  +Q      + K 
Sbjct: 777  -IDELNRRIENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEERETQLRYADDIRKN 835

Query: 475  KLSKKPSLREA---------ALLLTLINHPAILQEQYQELADIRYDNNELQK-------- 517
                   LRE           +L  L +         Q+L +I+   ++ QK        
Sbjct: 836  IQKDLDDLREKYDRVYSDNEKILGELEHAQKAAHLAEQQLKEIKIQRDDYQKQKDEHARH 895

Query: 518  ---LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
               +   L ++   ++                 + +   + Q+      +   +  I   
Sbjct: 896  LFDIRHKLETEIKGRQDLQKNGARSNDELDKLRQTISDYESQINLLRRHNDELDTTIKGH 955

Query: 575  RQGYQQALALYK-------RFRLLSRQKEEIEKQI--AQVTAKGE----AEKTAILISIL 621
            +    Q             +   L+++ ++ ++++   ++   G+     E    L + L
Sbjct: 956  QGKLTQLENELHSRSGEIEKLNDLNQRLQKEKQEVLNQKLKLDGDVQALKETIRKLENEL 1015

Query: 622  HEVHIQIHQIESQEA 636
             ++  +  ++  +EA
Sbjct: 1016 EKLRTENKELVGKEA 1030



 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQV 605
             E ++++++ + D        E  I ++   +++ L   +     L R+  E+E +++Q+
Sbjct: 1171 KERIERIEKNILDRYHDDELAEHKIREINDRWKRELERLENDKDDLERRIRELEDELSQI 1230

Query: 606  TAKGEA------EKTAILISILHEVHIQIHQI 631
                +       E      + + ++   I  +
Sbjct: 1231 GRGNDKTENDITELKRKHAAEIDKLKSDISAL 1262



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/308 (9%), Positives = 83/308 (26%), Gaps = 47/308 (15%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
                     + +   L     L + + E       + R      +   +     +    +
Sbjct: 1827 NLQDAEEERRALESRLASAKTLLRSQEEALKQRDEERRQMKSKMVAAELQARGKEAQLRH 1886

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             ++ +++ L+       T+        ++    R Q     R   S   K +L       
Sbjct: 1887 LNEQLKN-LRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDSNKLQLQIASFES 1945

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDN-------NELQKLWSFLFSDFVEQKYFLPEE 536
            E  +L          ++  +    +R  +       ++  KL   L      +       
Sbjct: 1946 ERQILT---------EKIKELDGALRLSDSKVQDMKDDTDKLRRDLTKAESVENELRKTI 1996

Query: 537  IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
              Q      +  L  QL     +    +   +    ++     +     +R   ++ +  
Sbjct: 1997 DIQSKTSHEYQLLKDQLVNTQNELNGANTRKQQLENELLNARSEVRDYKQRVHDVNNRVA 2056

Query: 597  EIEKQIAQVTAKGE------------------------------AEKTAILISILHEVHI 626
            E+++Q+    ++                                  +  + +  L ++  
Sbjct: 2057 ELQRQLQDANSEKNRVEDRFLSVEKVVNTMRTTETDLRQQLETAKNEKRVALKELEDIKR 2116

Query: 627  QIHQIESQ 634
            ++ Q+E++
Sbjct: 2117 RLSQLENE 2124


>gi|297283773|ref|XP_001106511.2| PREDICTED: serine/threonine-protein kinase TAO2 isoform 4 [Macaca
           mulatta]
          Length = 1122

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           +R A+L+   I          ++L+  +    + QK    L S    ++      + + L
Sbjct: 469 IRTASLVSRQIQEHEQDSALREQLSGYKRMRRQHQKQLLALESRLRGEREEHSARLQREL 528

Query: 542 CE--RGFGELLKQLDRQVRDAGLWSATTEANIVD---------VRQGYQQALALYKRFRL 590
                GFG   ++L R+ +  G   A                  ++     L   KR   
Sbjct: 529 EAQRAGFGAEAEKLARRHQAIGEKEARAAQAEERKFQQHILGQQKKELAALLEAQKRTYK 588

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           L  +KE++++++ +  +  + EK       L     Q+ Q +++E
Sbjct: 589 L--RKEQLKEELQENPSTPKREKAE----WLLRQKEQLQQCQAEE 627


>gi|260310481|gb|ACX36512.1| GH10189p [Drosophila melanogaster]
          Length = 675

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEK 600
            E+   +  ++  +    A   +   +    D  +  Q+ +   +R           +E+
Sbjct: 409 EEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEE 468

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Q+ Q+ A  +  +       L  +  ++ + ++ EA+
Sbjct: 469 QLKQLQAAKDELELRQ--KELQAMLQRLEEAKNMEAV 503



 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 94/273 (34%), Gaps = 7/273 (2%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K + ++     +           E+          +LE++  N    I+++K    +
Sbjct: 257 DQHKMSKDEWEQSIMTWWQEHRSMLREDAMMEYLKIAQDLEMYGVNYFE-IRNKKGTDLW 315

Query: 425 SQAIRDRLQQLFQKYI-TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                  L    Q    T   G+     +N    ++K   + + + +      + +  + 
Sbjct: 316 LGVDALGLNIYEQDDRLTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRIN 375

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  L L + NH   ++ +  +  D++    + ++  +    +  + +  L         +
Sbjct: 376 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQ 435

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           + + + LKQ+   +  +       +  I  + +  +Q  A       L  +++E++  + 
Sbjct: 436 QEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEEQLKQLQAA---KDELELRQKELQAMLQ 492

Query: 604 QVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
           ++      E      L   +    +++ +I+ +
Sbjct: 493 RLEEAKNMEAVEKLKLEEEIMAKQMEVQRIQDE 525


>gi|217039386|gb|ACJ76852.1| DNA primase [Streptococcus agalactiae]
          Length = 105

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 2/102 (1%)

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                +   I        +  Y   + + L       + +     R   ++ +       
Sbjct: 6   AYVEKIAKLIAKSPSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHHRSQQQASSSVQ 65

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
           +   MQ  L +       +  E  L   L+NHP +L E    
Sbjct: 66  TSATMQ--LPQTGKLSAITKTEMQLFHRLLNHPYLLNEFRNR 105


>gi|239616597|ref|YP_002939919.1| chromosome segregation protein SMC [Kosmotoga olearia TBF 19.5.1]
 gi|239505428|gb|ACR78915.1| chromosome segregation protein SMC [Kosmotoga olearia TBF 19.5.1]
          Length = 1173

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 100/282 (35%), Gaps = 24/282 (8%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL--R 421
               +   ++L      L++   K  T  + F+  D+  E    L       ++  L  +
Sbjct: 238 MEGHEKVSDELKELQRKLIEHESKWSTLRQEFSEMDKEIEGFTRLLEEYKKRQNDLLELK 297

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             YS+ + D+  +L +      +          R  + K  S  + Q    + K  K+  
Sbjct: 298 EMYSKKLSDKESKLIEVSTKLDTLKAEVEDLEKRKDELKLISDGMKQQIEDEEKELKELE 357

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQ 539
             + +++           +  +EL  +      + K+ + L   S+  E        I  
Sbjct: 358 SIKDSMVHKYSEKEKDWLKLQEELDSV---VKRMSKIENELERLSNVREDTQKRLNLIGS 414

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           +L  +G     ++L+   ++    +A  + +    ++  +      +R   L  Q EE++
Sbjct: 415 QLQSKG-----ERLEDLKKEIEELAAQGKESTEKQKELEENIALSKERRDTLENQLEELK 469

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           ++IAQ             +  L    I+ + +E Q+   +GF
Sbjct: 470 EKIAQS------------MEELRRSQIERNTLERQQLEYQGF 499


>gi|212539696|ref|XP_002150003.1| MIND kinetochore complex component Nnf1, putative [Penicillium
           marneffei ATCC 18224]
 gi|210067302|gb|EEA21394.1| MIND kinetochore complex component Nnf1, putative [Penicillium
           marneffei ATCC 18224]
          Length = 225

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 9/134 (6%)

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
           L+ +   L +   E       E ++ + ER   + L +LDR V +A    +  E +  DV
Sbjct: 72  LESVHRQLNAKLEEGA---TAEFNEIIKEREVIKGLNELDRLVGEARRRKSQGE-SESDV 127

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVHIQIHQI 631
                 A  LY+    L+   +E +  +    +      A     +++   E+   +  +
Sbjct: 128 PPHMLDADGLYR--AHLTPYLQEAQVALNTKIETAQSQNAALAEKVLAQRKEIESLLSGL 185

Query: 632 ESQEAMIEGFGKMS 645
           E+  A +EG  K S
Sbjct: 186 EAVMADLEGSAKTS 199


>gi|189467488|ref|ZP_03016273.1| hypothetical protein BACINT_03877 [Bacteroides intestinalis DSM
           17393]
 gi|189435752|gb|EDV04737.1| hypothetical protein BACINT_03877 [Bacteroides intestinalis DSM
           17393]
          Length = 862

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/212 (9%), Positives = 68/212 (32%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++    +      +  +++    + +      +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVYVNEPDTLSTISILRGLKERYENHHHVRIKDDAIIAAVELSN 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      +     +          +   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDKPKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           +     L     +      +  +Q    L  + +    + E ++ +  +   +G+  K  
Sbjct: 437 EQIGKELAELKEQEKSHKAK--WQSEKTLVNKIQQNKVEIENLKFEADKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L   + +   ++H ++  +AMI+
Sbjct: 495 EIRYGKLQALNKEIEDTQKELHMMQGDKAMIK 526



 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 69/264 (26%), Gaps = 34/264 (12%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + +  +DM              +    +   +K     I        
Sbjct: 220 RILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERLKAVINEVKKSEGDI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E    +  +N P  L                   +   L   +    +        R+ +
Sbjct: 328 ERRFQIVYVNEPDTLSTI---------------SILRGLKERYENHHHV-------RIKD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 ++  +R + D  L     +       +   +  ++ +    +SR+ +++E +  
Sbjct: 366 DAIIAAVELSNRYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIERE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQ 627
            +  + +  K   +   L E+  Q
Sbjct: 426 AIKRENDKPKLEQIGKELAELKEQ 449


>gi|163781613|ref|ZP_02176613.1| hypothetical protein HG1285_01983 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882833|gb|EDP76337.1| hypothetical protein HG1285_01983 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 548

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 57/184 (30%), Gaps = 21/184 (11%)

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
           +           L  +    E   L  +           +          E  +    + 
Sbjct: 28  KEAPVVQQPAVDLESEIRKAEEEALKLI----------KEAQERSEKALKEADEKAQRII 77

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                +   L +E+ ++   +   E  + L  + R       T E    D+ +  ++   
Sbjct: 78  EQAQREAERLRKELEEK--RKELKEFEENLLSKERQLERKWETIERREEDIYRREKEVRE 135

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV--------HIQIHQIESQE 635
             ++     ++  E+E+++A+   + +  K   ++  L  +          ++ +   +E
Sbjct: 136 FERQVETKRKEILELEEKLAKEQEEVKKLKEQEVL-ELQRIASMTVEEAREELLKRVEEE 194

Query: 636 AMIE 639
           + IE
Sbjct: 195 SRIE 198


>gi|146185520|ref|XP_001032012.2| UBX domain containing protein [Tetrahymena thermophila]
 gi|146142736|gb|EAR84349.2| UBX domain containing protein [Tetrahymena thermophila SB210]
          Length = 2004

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              E+ +R+ +    E  +   RQ R         E      +    +     KR   L 
Sbjct: 660 EEAELKERIQKLKQDEEEESKQRQQRLQEQKKKEEEDAARIKQNLILEEETEKKRIEELQ 719

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAIL--ISILHEVHIQIHQ 630
            +K++ ++++ ++  + + +K   L  I+ L E+  Q  +
Sbjct: 720 NKKKKEQQELERIQNEYKKQKEEELERIAKLKEIKKQQEE 759


>gi|146283013|ref|YP_001173166.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           stutzeri A1501]
 gi|145571218|gb|ABP80324.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           stutzeri A1501]
          Length = 906

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 75/261 (28%), Gaps = 17/261 (6%)

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
                +         +    +   L           +   Y + ++  L Q+  +     
Sbjct: 17  YFTWMQLSEMRHQLDERGQLIAEQLAPLAA----PAMNLGYDKRLQRILTQVLDQADVRA 72

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ-- 501
                  +    H   +  +           ++S         L+  L  H  +  E   
Sbjct: 73  VTILDPERVQRVHAGPRMLTPPPPGDPEGLTRVSSMDHT--RILMPVLSRHLNLADEARG 130

Query: 502 --YQELADIRYDNNELQKL----WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
              + +  +  + +    L     S L S F+     +   +      R     L+++  
Sbjct: 131 PEEKLIGWLELELSHHNTLLRGYRSLLTSLFLVGTGLIITALLALRMSRAISLPLQRVKA 190

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            V         T    +   +  + A  + +    L   +EE+++ I Q T   + ++  
Sbjct: 191 AVAQLKDGHLETRLPPLGSHEMDELASGINRMAEALLSAREELQQSIDQATE--DVQQNL 248

Query: 616 ILISILHEVHIQIHQIESQEA 636
             I  +  + + + + E+ EA
Sbjct: 249 ETI-EIQNIELDLARKEALEA 268


>gi|118092824|ref|XP_001231260.1| PREDICTED: similar to mitotic kinesin-related protein, partial
           [Gallus gallus]
          Length = 667

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 90/272 (33%), Gaps = 13/272 (4%)

Query: 363 IRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           ++     A ++L   +S   +      E   +     ++    E  ++     +++Q+  
Sbjct: 162 LQDRLSDAMKQLQQVQSEEKLVNETLEEVSKQYEKMREDLFAREKIIEVLRMTLEEQEET 221

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           +     + +   +  ++ ++E   + +  ++     +     +          + S +  
Sbjct: 222 HLEQDRVLEAQLEENERLVSELETWKQKCRELQNQINSGQQQKNTNSEEANMNENSTELI 281

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             +  L  +   +    ++  +E  ++     E + L +     F E +    +      
Sbjct: 282 KLQKELEESEAKYQTDRKKWLEEKEELLNQIKEAENLRNREMEKFAEDRQHHGK------ 335

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +     L+ QL+ + R+   W    +  +  +     Q   L        ++  E+++ 
Sbjct: 336 QQAEIERLVAQLEEKDRNLQKWREERDQLVEALE---VQLKTLASNAIQKEKEIAELKQS 392

Query: 602 IAQVTAKGEAEKTAILISIL---HEVHIQIHQ 630
            A+ ++K        L   L    ++  ++ Q
Sbjct: 393 AAKDSSKDNEAVIEELRKELAVKDDIIKELKQ 424


>gi|161760667|ref|NP_001104572.1| prelamin-A/C isoform C [Mus musculus]
 gi|1794160|dbj|BAA08570.1| lamin C [Mus musculus domesticus]
 gi|74151854|dbj|BAE29714.1| unnamed protein product [Mus musculus]
 gi|74211746|dbj|BAE29226.1| unnamed protein product [Mus musculus]
 gi|74220230|dbj|BAE31294.1| unnamed protein product [Mus musculus]
 gi|112378773|gb|ABI16252.1| lamin C [Mus musculus]
          Length = 574

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|118350094|ref|XP_001008328.1| hypothetical protein TTHERM_00013490 [Tetrahymena thermophila]
 gi|89290095|gb|EAR88083.1| hypothetical protein TTHERM_00013490 [Tetrahymena thermophila
           SB210]
          Length = 1965

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 77/263 (29%), Gaps = 23/263 (8%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR------YYYSQAIRDRLQ 433
              +M   +E E           EL   +       + Q+L+        Y Q I     
Sbjct: 23  DDPNMKCLKENEYSCNQILQRMTELFFDIFESERQTQSQQLKSQYTMLKEYCQNISHEKF 82

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
           ++ ++   E         K             +++      ++  K    E  +L+  IN
Sbjct: 83  EIQRELQNEILQMSEEHDKIHSTNAILNEEISMLKIKNEHLQMENKRIASEQEILICQIN 142

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                    + L ++   ++EL+                       +L      +  +  
Sbjct: 143 --EQRATFQKNLEEMEMISSELKIELDLYKDRIK------------KLEATNEKQHQQIR 188

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG--EA 611
           +  +      +   E     + +   +   L +   L  +   E+E  + Q       + 
Sbjct: 189 EYSMSIQKQQNKIKETENQYLIESQIKGRHLNE-LELCQKNIRELELLLRQSNEANTKQN 247

Query: 612 EKTAILISILHEVHIQIHQIESQ 634
           E+  +  + L E+  QI  +E+Q
Sbjct: 248 EEIRLNQNQLQELDKQIKSLENQ 270


>gi|2662349|dbj|BAA23661.1| GCP170 [Homo sapiens]
          Length = 1530

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 46/120 (38%), Gaps = 8/120 (6%)

Query: 528 EQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           E      E    ++ E       +L ++L+    +        ++     +Q  Q  L L
Sbjct: 646 EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTL 705

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI-----LISILHEVHIQIHQIESQEAMIE 639
            +R + L   ++E    + Q+T   EA ++       L +   E+  ++ +++ + A  E
Sbjct: 706 LQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASRE 765


>gi|6331294|dbj|BAA86589.1| KIAA1275 protein [Homo sapiens]
          Length = 1140

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 42/368 (11%), Positives = 104/368 (28%), Gaps = 24/368 (6%)

Query: 275 ILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA 334
            L++   DV+ + +              +    ++L  L    +L  +            
Sbjct: 16  FLLQAREDVIHMLKTEKTKPEVLEAHYGSAEPEKVLRVLHRDAILAQEKSIGEDVYEKPI 75

Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRET 390
            +L             +L                   E    +    +    D     E 
Sbjct: 76  SELDRLEEKQKETYRRMLEQLLL--AEKCHRRTVYELENEKHKHTDYMNKSDDFTNLLEQ 133

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
           E        E+ +     K   N  +  KLR    +     L  + ++ +       +  
Sbjct: 134 ERERLKKLLEQEKAYQARKEKENAKRLNKLRDELVKLKSFALMLVDERQMHIEQLGLQSQ 193

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQELADI 508
           K     +  +   ++L   +    +  +K    E         H A    QE  +  A +
Sbjct: 194 KVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDF-----EHKASRFSQEHEEMNAKL 248

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR-QVRDAGLWSATT 567
               +  ++L   L       +       + +  E    EL  ++ + +  ++ L     
Sbjct: 249 ANQESHNRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLM---- 304

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            A + ++R+   +     +       Q  E+ K++ +         +  L   + ++  +
Sbjct: 305 -AEVENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHH-----SKELRLEVEKLQKR 358

Query: 628 IHQIESQE 635
           + ++E  E
Sbjct: 359 MSELEKLE 366


>gi|46127679|ref|XP_388393.1| hypothetical protein FG08217.1 [Gibberella zeae PH-1]
          Length = 447

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 80/248 (32%), Gaps = 25/248 (10%)

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
            +    +       K     + DQ ++ + +++ +  L+   +      S       +  
Sbjct: 160 MHAGGSQVARWQGTKESAEAVVDQIIKIH-NESGKAMLKIQEELVDGGMSLDETGAGREV 218

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
           +    +  ++   + + ++    +        L   L +   + +++  E         E
Sbjct: 219 QREILEAKAELKERITQLQKAQEEMIQQSNETLARELASQRKVFEDRLAE-------TTE 271

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRL--CERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            Q+         +EQK    E++       ++     L++   +     L     E +  
Sbjct: 272 AQETLKISLETLMEQKEAEYEKLLAGAVSEQKQLAAALQEKAAEFERVRLEQLEDEESFQ 331

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI--HQ 630
           + +  +               + E ++++I     K E +K    +    ++  ++   +
Sbjct: 332 EAKAEFAS-------------EVESLKQKIKDQENKMEQQKLEAELKAAEDLKAELEKRR 378

Query: 631 IESQEAMI 638
           IE ++A +
Sbjct: 379 IEEEKAAM 386


>gi|325191146|emb|CCA25936.1| putative Ptype ATPase [Albugo laibachii Nc14]
          Length = 3552

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 104/293 (35%), Gaps = 23/293 (7%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P +      +   ++ +  +  L D         ++     +   +    +   + ++++
Sbjct: 1497 PKTEYEQLMEQERKETLQRAQVLKDHSHDTIKLLKTLGARAQAFTIRDQQRLVKDDLEEE 1556

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              R  Y + + + L +L +    +        ++  R  D+    +++ Q    + KL+ 
Sbjct: 1557 SRR--YEEKM-NTLMELERLQGIQREEELHAEQRAKRTGDRLVLEEQIEQRRQQRDKLNV 1613

Query: 479  KPSLREAALLLTL-----------INHPAILQEQYQELADIRYDNNELQ-KLWSFLFSDF 526
            +       L+  +           ++      E   E+      + + + +L      + 
Sbjct: 1614 RTQQEGHDLVAQMKRQQQEQREKDLSRRQHASETLHEIQKFNAQSKQHKMELKRKQQEED 1673

Query: 527  VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             + + +  E+  +   ER   E +K+ + ++R A L +   +       +     L   +
Sbjct: 1674 DKIQRYQREK-DEEAKEREIQEAIKRQETEIRVARLRANQEKMANE---KSEMDELRAKR 1729

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                  RQ  E+E  +A+ T    AE        +  +H+Q  +++  EAM++
Sbjct: 1730 AAEARERQAREVELNLARKTRDDLAELQKA--REIQALHLQGARVQ--EAMLQ 1778


>gi|325191144|emb|CCA25931.1| putative Ptype ATPase [Albugo laibachii Nc14]
          Length = 3547

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 104/293 (35%), Gaps = 23/293 (7%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
            P +      +   ++ +  +  L D         ++     +   +    +   + ++++
Sbjct: 1497 PKTEYEQLMEQERKETLQRAQVLKDHSHDTIKLLKTLGARAQAFTIRDQQRLVKDDLEEE 1556

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              R  Y + + + L +L +    +        ++  R  D+    +++ Q    + KL+ 
Sbjct: 1557 SRR--YEEKM-NTLMELERLQGIQREEELHAEQRAKRTGDRLVLEEQIEQRRQQRDKLNV 1613

Query: 479  KPSLREAALLLTL-----------INHPAILQEQYQELADIRYDNNELQ-KLWSFLFSDF 526
            +       L+  +           ++      E   E+      + + + +L      + 
Sbjct: 1614 RTQQEGHDLVAQMKRQQQEQREKDLSRRQHASETLHEIQKFNAQSKQHKMELKRKQQEED 1673

Query: 527  VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             + + +  E+  +   ER   E +K+ + ++R A L +   +       +     L   +
Sbjct: 1674 DKIQRYQREK-DEEAKEREIQEAIKRQETEIRVARLRANQEKMANE---KSEMDELRAKR 1729

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                  RQ  E+E  +A+ T    AE        +  +H+Q  +++  EAM++
Sbjct: 1730 AAEARERQAREVELNLARKTRDDLAELQKA--REIQALHLQGARVQ--EAMLQ 1778


>gi|321399332|emb|CAM67273.2| putative kinesin [Leishmania infantum JPCM5]
          Length = 1099

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 95/311 (30%), Gaps = 24/311 (7%)

Query: 352 LLSRGEDPDSFIRCYGKTAF----EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
            + + EDP   +    +       ++L           + +  E R      + A+ E  
Sbjct: 562 WVKKNEDPQVVLIRELREQVVDLEQRLKEAGGSNYTNEYVQGLERRLHQLEKKCADQERI 621

Query: 408 LKNC-----INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
           +           I D  +   Y      R ++  Q+   E +   +  K      + +  
Sbjct: 622 IAGLRAQLEFAGIVDPTVAEGYLDP-ATRAKEDQQRTKAEENMRKQLDKAQITIAELRAE 680

Query: 463 SQRLMQSSLVK--GKLSKKPSLREAALLLT---LINHPAILQEQYQELADIRYDNNELQK 517
            +    +   +    + +K   ++A LL     +  H  +    ++ +  +       + 
Sbjct: 681 LEHRGVTIEPESLKAMKEKLQRQDAQLLALTTEVSLHRRLRS-HFENIDTVMELVKGKET 739

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L     +  +         + + L ER       +   +   A       E     + +G
Sbjct: 740 LLLCACNGILTANSEAAAILQKMLSEREDDLRDTKRLHEEELATQAERFCERLKEALDEG 799

Query: 578 YQQALALYKRFRLLSRQKE-EIEK--QIAQVTAKGEAEKTAILISILHEVHIQIH----- 629
             Q   L  R R    Q E  +++  +I ++  K   ++   L   +     ++      
Sbjct: 800 AVQQQQLLDRHRDAVAQLEGRLQRSHEINEMERKRNDKEKEELRQRVQLAQERMRNEYQQ 859

Query: 630 QIESQEAMIEG 640
           +IE   A +EG
Sbjct: 860 EIERLRARVEG 870


>gi|297709441|ref|XP_002831451.1| PREDICTED: oral-facial-digital syndrome 1 protein-like [Pongo
           abelii]
          Length = 1011

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 89/227 (39%), Gaps = 16/227 (7%)

Query: 418 QKLRYYYSQAIRDRLQ-QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +     Y + I ++L+ ++ QK            K  A+ + +K  +             
Sbjct: 197 EIKLNEYKREIEEQLRAEMCQKLKFFKDTEIAKIKMEAKKKYEKELAMFQNDFEKACQAK 256

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           S+   LRE + L  +  H  ++ E  +  A  +    ++  L      +   ++     E
Sbjct: 257 SEALVLREKSTLERIQKHQEVI-ETKEIYAQRQLLLKDMDLLRG---REAELKQRVEAFE 312

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----QALALYKRFRLL 591
           ++Q+L E     + + L R+ ++   +  T +  + +    YQ       +    R    
Sbjct: 313 LNQKLQEEKHKSITEALRRREQNIKSFEETYDRKLKNELLKYQLELKDDYIIRTNRLIED 372

Query: 592 SRQKEE----IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            R+ +E    +++++  V +K   E+    ++ + E+ +++  +++Q
Sbjct: 373 ERKNKEKAVHLQEELIAVNSK--KEELNQSVNRVKELELELESVKAQ 417


>gi|268318390|ref|YP_003292108.1| hypothetical protein Rmar_2853 [Rhodothermus marinus DSM 4252]
 gi|262335924|gb|ACY49720.1| hypothetical protein Rmar_2853 [Rhodothermus marinus DSM 4252]
          Length = 1029

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 75/245 (30%), Gaps = 42/245 (17%)

Query: 424 YSQAIRDR--------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           Y   + +R        L +  +        + R  +   +   ++ P+++   S    G 
Sbjct: 417 YKDWLSERIAPPRDYELGESLRCPANIVRTFDRAARYYRKLPREERPARQRRDSPAAPGG 476

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS-FLFSDFVEQKY--F 532
                +        +LI+   + +E  + L  +  ++   + +WS  L      Q     
Sbjct: 477 HLIYVATENQQQAASLIH--ELCEE--EALVVVSLEDEVPEHIWSPALIKGLERQTVVVL 532

Query: 533 LPEEIHQRLCE-----------RGFGELLKQLDRQVRDAGLWSATTEANI---------- 571
            P  + +RL               +   + +L   +  +       +             
Sbjct: 533 NPGAVLERLDRFVSEENFAFDREDYRTEVDRLRVALSRSSETLVFLDVAPTAAQRACSLR 592

Query: 572 ---VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL--HEVHI 626
               D  +     L        LS   E I+ ++ + TA+ + + +  L   L   E+ +
Sbjct: 593 LLGDDAVEVAPHELLNSLEQAELS-LLERIQARLEEFTARIDEDPSQALQLALRARELQL 651

Query: 627 QIHQI 631
           +I  +
Sbjct: 652 RIQSL 656


>gi|262198510|ref|YP_003269719.1| response regulator receiver [Haliangium ochraceum DSM 14365]
 gi|262081857|gb|ACY17826.1| response regulator receiver [Haliangium ochraceum DSM 14365]
          Length = 910

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 83/277 (29%), Gaps = 16/277 (5%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
            K A +KL  E           E E        ++ E E       +             
Sbjct: 388 SKEAADKLRGELEADKQKALSEERERNRAELDAQKQEAERLRSQLESKNSGDDEGSSAFS 447

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             R+ L    +    E        +   + R      +++ +    K  L  K    E  
Sbjct: 448 REREFLNLRERINQKEREVLDLRDEVGGKERGILDLKEQIRKLEHSKTALDSKNLELEQR 507

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERG 545
           +L +            ++  ++      L++    L +   + +      ++  R+    
Sbjct: 508 ILGS-----------NEKADELERKRKALEEEKQSLEAKVTDLEGKLDDAKVRARVEGER 556

Query: 546 FGELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALALYKRFRL--LSRQKEEIEKQI 602
             E L++   +   A   +    E  I  +++ + QAL          LS QK E+E   
Sbjct: 557 MEETLRKQKEESEAALASAQGEREKTIGALKEEHVQALTKRDEEHAQALSSQKAELESAR 616

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            Q   +        L + L E   ++ + E   A+ E
Sbjct: 617 EQALREQAENHAKELAAKLAETETRLQE-EKTAALKE 652


>gi|224809476|ref|NP_001138995.1| ankycorbin isoform c [Homo sapiens]
          Length = 972

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 101/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 586 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 643

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 644 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLN 703

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 704 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 762

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 763 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 822

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 823 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 860


>gi|197294813|ref|YP_001799354.1| hypothetical protein PAa_0798 [Candidatus Phytoplasma australiense]
 gi|171854140|emb|CAM12132.1| Conserved hypothetical protein [Candidatus Phytoplasma
           australiense]
          Length = 1164

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 82/225 (36%), Gaps = 8/225 (3%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
                + +  ++    + +    +   ++ + E + +    +            +  ++ 
Sbjct: 281 EYNKSLLNPDMQKQ-VEELLQHEKAKNEQLLQERNYFEANLQAQQLEMLNIKNQKDNLEK 339

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            L + K       ++  L   + +    L  + +EL +++ D     +L   L+    + 
Sbjct: 340 ELAEQKNLSDAEKQQ--LTKQIADINTNLTSKNEELNNLKKDQEAHAELRQELYDVINKD 397

Query: 530 KYFLPEEIHQRLCERGFGELL-KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
           K  L ++  Q   ++   +   +QL +Q+ D      +    + ++ Q  ++A    K+ 
Sbjct: 398 KENLQQKTKQLEEQKNLSDAEKQQLTKQIADINTNLTSKNEELNNLNQKLEEA---AKKQ 454

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             L+   +  E  + Q+      EK   L + + ++   +++ E 
Sbjct: 455 TELNNFIQTQENNLEQI-KTSSEEKQQELNNKVKDIQTNLNRQEK 498


>gi|146420580|ref|XP_001486245.1| hypothetical protein PGUG_01916 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 986

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/282 (8%), Positives = 85/282 (30%), Gaps = 7/282 (2%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +D +           +          +      +        DE       LK  +  I 
Sbjct: 504 KDLEQERATQTSKQKDVTDNSEELRNENNKLSASVKELQKKLDEVKAELERLKREVGSIT 563

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            +  +   ++ + +  +        +          + + +  K   + + + +L + +L
Sbjct: 564 SE--KEELNKRLSELAKYKSSDTSLKLEVSTLQVSLDHKEQLIKELRKEVEKLTLREKEL 621

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE- 535
           +   +L +   +    N+ +++ ++ + +        + + +   LF    E++    E 
Sbjct: 622 ADSLALTKRQKMELEANNKSLVSDKNELITKQELLFEKGKSMEQQLFKLQAEKQSLSTEL 681

Query: 536 -EIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             ++++     R    +  +L    +        ++     V     +           +
Sbjct: 682 EALNRKHENVARDKQHVASELLTFKQRYEELYMKSKEAQDKVDSMQDELSEARNMLLERT 741

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           R+   I + +          K   L++ +  +     ++E++
Sbjct: 742 RESNTIRRLLMDAEESL-KAKDGELMAEIQSLKEDKERVEAE 782



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 46/139 (33%), Gaps = 4/139 (2%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFS---DFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            E  +     +  + +L++L   L     + V+ K  + E   Q L           +++
Sbjct: 421 NEVKELREKCQLQSEDLEELRDLLRDVGDELVQAKDRIKELNAQALENGKADGQYSDMEK 480

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           ++    +     E+ I+      +             +   +  +++     K  A    
Sbjct: 481 ELAQLKVDKNALESKILQFEATIKDLEQERATQTSKQKDVTDNSEELRNENNKLSA-SVK 539

Query: 616 ILISILHEVHIQIHQIESQ 634
            L   L EV  ++ +++ +
Sbjct: 540 ELQKKLDEVKAELERLKRE 558


>gi|145346598|ref|XP_001417773.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578001|gb|ABO96066.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1372

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 78/235 (33%), Gaps = 8/235 (3%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
             D    L   L + I   +  + R    + +  + ++     +   S       +  + +
Sbjct: 818  QDSDEALGDELADLIKINESMRERLEMQEELLAQSREKDLVIVEHESNLDALNSRYEKTK 877

Query: 458  DQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-IN--HPAILQEQYQELADIRYDNN 513
             + K       +          +    E  L     +   + A L +Q + L ++   + 
Sbjct: 878  SKLKACEISRDEGVTQLRNRDTRIEFLEEELASIRELQGANSARLSDQLKRLGELEM-DA 936

Query: 514  ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
              +K         +EQ      +    L E     L  QL  +   A +  A+ + N   
Sbjct: 937  GRKKAAKEAAELKLEQSEAAARKTVAHLEEE-ISNLQNQLASERTAAEISRASGDVNAAR 995

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHI 626
            +RQ  +Q             +K ++ ++IA++  + E    + A L++ L ++  
Sbjct: 996  LRQETRQLQEKIDALNACESEKAQMSQEIARLEQEMEELRSRLAELLAELSDMKR 1050


>gi|224809468|ref|NP_056392.2| ankycorbin isoform a [Homo sapiens]
 gi|224809470|ref|NP_001138992.1| ankycorbin isoform a [Homo sapiens]
 gi|224809472|ref|NP_001138993.1| ankycorbin isoform a [Homo sapiens]
 gi|108860920|sp|Q9P0K7|RAI14_HUMAN RecName: Full=Ankycorbin; AltName: Full=Ankyrin repeat and
           coiled-coil structure-containing protein; AltName:
           Full=Novel retinal pigment epithelial cell protein;
           AltName: Full=Retinoic acid-induced protein 14
 gi|119576302|gb|EAW55898.1| retinoic acid induced 14 [Homo sapiens]
          Length = 980

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 101/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 594 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 651

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 652 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLN 711

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 712 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 770

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 771 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 830

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 831 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 868


>gi|72392765|ref|XP_847183.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62359228|gb|AAX79671.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70803213|gb|AAZ13117.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 590

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 85/244 (34%), Gaps = 11/244 (4%)

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD-RLQQLFQKYI--TEHSGYGRYW 450
             +   E  +    ++    H++D+ +     + + + RL+++       T+     R  
Sbjct: 244 WESENSELNKKLREVEQRCAHVEDRAVVAECGRKMLELRLREVEMSLNYSTDAVNKLRKS 303

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
              A         ++       +  + +    RE  L+         + +    + +   
Sbjct: 304 LNEANRDRDHALQEQYNVYEANRRDMIEFYDRRERELVH---EFNETVTKLQDIMYNAMK 360

Query: 511 DNNE-LQKLWSFLFSDFVEQKYFLPEEI--HQRLCERGFGELLKQLDRQVRDAGLWSATT 567
            + + L++ W+ +     E+     +E+   +   ER +   + ++++           +
Sbjct: 361 AHEDKLRECWNDMQRLQQEKHEESIKELNILREKEERDYNARISRVEQD-NQRRYEQYRS 419

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           E  +++ RQ  ++   L        R+  E E+++     + E +    L++   EV   
Sbjct: 420 EMALLEQRQREREE-HLLMDISQRERELSEREQRLRVQRTQDEQDTKIALMAKETEVKTY 478

Query: 628 IHQI 631
             ++
Sbjct: 479 YERL 482


>gi|31418642|gb|AAH52988.1| Retinoic acid induced 14 [Homo sapiens]
 gi|168269816|dbj|BAG10035.1| ankycorbin [synthetic construct]
          Length = 980

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 101/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 594 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 651

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 652 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLN 711

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 712 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 770

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 771 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 830

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 831 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 868


>gi|268530992|ref|XP_002630622.1| C. briggsae CBR-ZYG-12 protein [Caenorhabditis briggsae]
          Length = 783

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 54/426 (12%), Positives = 132/426 (30%), Gaps = 51/426 (11%)

Query: 237 PETILFHKGKNLYNFFGALNYLQ-----------KSIRKDVRRNSSSFIILVEGYMDVLS 285
           PE   FH+   L      LN               + R+     +   ++  +  +D L 
Sbjct: 203 PEVPTFHEISELDGSQNELNSSHVESSVITNGNGSAERRSTLSANDQVLVEAQLEIDELR 262

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
             +  +   V  L  AL   QL       P  +   +  +  LR   +  +  +  L   
Sbjct: 263 SERDNLIKDVERLTKALESSQLDTSTCSEPNELSILEKQNEELRVKRRQAEERVLELEAS 322

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
                 ++ +  D +  ++   K              D+   R   N+  +  +   + E
Sbjct: 323 MEHFQAIVVKLTDENDTLQSGQKELNMLKTHLDTAQSDVEEWRTIANKYQSDAEMLKKRE 382

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
             +K     +K           +  RL+   +    +        +  ++       +  
Sbjct: 383 KEVKELQGQVKS----------LTSRLEHHVKTATIDEDNKAGIVQLRSQIGTLTANNVE 432

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI-----RYDNNEL----- 515
           L      K ++ ++  L+       LI +   ++E      D+       +N  L     
Sbjct: 433 LNVGLESKKRIVEQLELQ-------LIQYKEKVKELEDRKEDLIAERNELENKLLFKESV 485

Query: 516 --QKLWSFLFS--DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
             + L   +F       + +    ++   +  +   E +++L+       L     E   
Sbjct: 486 TPRSLHESMFEAGHLSFEPFSDKTKLPLEIENKRLTERIQELE------SLEPLKGEIIK 539

Query: 572 VDVRQGYQQALALY--KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +  + G  +   L   K+   L RQ  ++++++ +       +    L   L + ++++ 
Sbjct: 540 MKSQNGVLEEEKLVITKQMEELERQVADLQEKLTKNQQHASGDVV-ELKVQLEKANVEVE 598

Query: 630 QIESQE 635
           ++   E
Sbjct: 599 RMRETE 604


>gi|17228623|ref|NP_485171.1| chromosome segregation protein [Nostoc sp. PCC 7120]
 gi|17130474|dbj|BAB73085.1| chromosome segregation protein [Nostoc sp. PCC 7120]
          Length = 1208

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 67/219 (30%), Gaps = 24/219 (10%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            +    Q +R  L +L            +   K    + Q+  +        +K   +++ 
Sbjct: 807  QESQLQQLRHTLAELEASQTPSEWQQIQATIKTQEQQIQQRETAFREAEQRLKNLENQQQ 866

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL------FSDFVEQKYFLP 534
             L+E             +QE  Q + + +       +  + +       +  + Q     
Sbjct: 867  RLQER------------IQEAQQRITEYQTQQTTCTEAINRVSQQTTTINAQITQTRAKL 914

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             E+ Q L           ++++VR   L     E  I  + +     L   +    L  Q
Sbjct: 915  SELEQHLGAEKQKR--DTIEQEVRSHLLRQQQLEWEIQKLEET---QLKRREDLTALQSQ 969

Query: 595  KEEIEKQI-AQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             +E+  ++   +    +      L   L  +  ++  +E
Sbjct: 970  LQELVPELPNPLPEVPDKVDLEELQKELRSLAKRLQAME 1008



 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 72/262 (27%), Gaps = 32/262 (12%)

Query: 379  LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438
               +  L     E  +  TP E  +++  +K     I+    R    +    RL+ L  +
Sbjct: 808  ESQLQQLRHTLAELEASQTPSEWQQIQATIKTQEQQIQ---QRETAFREAEQRLKNLENQ 864

Query: 439  YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
                        ++   ++ Q+      +     +         +  A L  L  H    
Sbjct: 865  QQRLQERIQEAQQRITEYQTQQTTCTEAINRVSQQTTTINAQITQTRAKLSELEQHLGAE 924

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            +++   +          Q++ S L      +      E  Q         L  QL   V 
Sbjct: 925  KQKRDTIE---------QEVRSHLLRQQQLEWEIQKLEETQLKRREDLTALQSQLQELVP 975

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
            +  L +   E                      L ++   + K++  +          + +
Sbjct: 976  E--LPNPLPEVPD-------------KVDLEELQKELRSLAKRLQAMEPVN-----MLAL 1015

Query: 619  SILHEVHIQIHQIESQEAMIEG 640
                    ++ ++  +   +EG
Sbjct: 1016 EEYERTQKRLEELSQKLQTLEG 1037


>gi|296242551|ref|YP_003650038.1| SMC domain-containing protein [Thermosphaera aggregans DSM 11486]
 gi|296095135|gb|ADG91086.1| SMC domain protein [Thermosphaera aggregans DSM 11486]
          Length = 937

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 73/222 (32%), Gaps = 26/222 (11%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             A++ R  Q   +            +   R  + +   +R  Q      +LS +    E
Sbjct: 522 IAALKTRHSQASAEAEALKQVAEALKEVAGRKAELEELGKRRRQVRENAEQLSARVEKLE 581

Query: 485 AALLLTLINHPAILQEQYQELAD-----IRYDNNELQKLWSFL------FSDFVEQKYFL 533
            +L           +E   +LA+       +D N   +L + +        +   +   L
Sbjct: 582 ESL-----------KEHRSDLANWKSLAASFDENVYSRLRTEVEGLSKELEELSSELTRL 630

Query: 534 PEEIHQRLCERGF--GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
             E+  RL        EL+ +L  ++  A        +   +  +         K+   L
Sbjct: 631 SAELSARLGITAGSREELVGKLREELEKAAKAELALASLNAEKEKLEADIRDYRKQAEEL 690

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            ++ EE+EK  A+   +   E+    +  L E   ++ ++  
Sbjct: 691 GKRIEELEK--ARGEIQERLERAEKNLRELEEAGRRLEELRK 730



 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 87/268 (32%), Gaps = 41/268 (15%)

Query: 407 HLKNCINHIKDQKLRYYY-----SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
           H      +I++Q LR +       +    R  +L +              +      +K 
Sbjct: 197 HTARTAENIREQVLRKHRELLEKIKEYAQRKNELEKTIQDAWRRIREEKLEEKALELEKA 256

Query: 462 PSQRLMQSSLVKGKLSKKPSLRE--AALLLTLINHPAILQEQYQELAD-------IRYDN 512
            +++   S+ +    +K  SLRE   ALL  +  +   L +  QE+++       + +  
Sbjct: 257 RAEKESLSNKLSEISAKASSLRENRQALLSKIGEYEKRLGKIKQEISEKTRLVEILAFKE 316

Query: 513 NELQKLW--------SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
                +           +      Q     E   ++L E         L+R         
Sbjct: 317 QVNSLIKIHEDEKSKREILRAKTSQLNA-LENFRKKLEE--LRAKHGSLERLEEAVRSLE 373

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------------VTAKGEAE 612
           +        ++   Q+   +  +   L  + +E++++I              + A+G  +
Sbjct: 374 SEVGKTREQLKALSQELGKVEGQEHRLRNEIQELQERIRSIVRERQLASIEPLIAEGSVD 433

Query: 613 KTAILIS----ILHEVHIQIHQIESQEA 636
           K   L+      L  + +++ +   +EA
Sbjct: 434 KIEALLRKTEEELSSLGLELEKAAREEA 461



 Score = 37.2 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 5/94 (5%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +      ++   +Q  + G      E    ++++  ++A    +      R+ EE+ K 
Sbjct: 672 EKEKLEADIRDYRKQAEELGKRIEELEKARGEIQERLERAEKNLRELEEAGRRLEELRKA 731

Query: 602 IAQVTA-----KGEAEKTAILISILHEVHIQIHQ 630
           I   T       GE E+    +  L     +I++
Sbjct: 732 IEVGTEHVKLYAGELERVEKELEDLRSQVKEINR 765


>gi|217039378|gb|ACJ76848.1| DNA primase [Streptococcus agalactiae]
          Length = 105

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 2/102 (1%)

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                +   I        +  Y   + + L       + +     R   ++ +       
Sbjct: 6   AYVEKIAKLIVKSPSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHHRSQQQASSSVQ 65

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
           +   +Q  L +       +  E  L   L+NHP +L E    
Sbjct: 66  TSATVQ--LPQTGKLSAITKTEMQLFHRLLNHPYLLNEFRNR 105


>gi|195130749|ref|XP_002009813.1| GI15567 [Drosophila mojavensis]
 gi|193908263|gb|EDW07130.1| GI15567 [Drosophila mojavensis]
          Length = 657

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEK 600
            E+   +  ++  +    A   +   +    D  +  Q+ +   +R           +E+
Sbjct: 394 EEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEEMERSQRDLLEAQEMIRRLEE 453

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Q+ Q+ A  +  +       L  +  ++ + ++ EA+
Sbjct: 454 QLKQLQAAKDELELRQ--KELQSMLQRLEEAKNMEAV 488



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 94/273 (34%), Gaps = 7/273 (2%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K + ++     +           E+          +LE++  N    I+++K    +
Sbjct: 242 DQHKMSKDEWEQSIMTWWQEHRSMLREDAMMEYLKIAQDLEMYGVNYFE-IRNKKGTDLW 300

Query: 425 SQAIRDRLQQLFQKYI-TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                  L    Q    T   G+     +N    ++K   + + + +      + +  + 
Sbjct: 301 LGVDALGLNIYEQDDRLTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRIN 360

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  L L + NH   ++ +  +  D++    + ++  +    +  + +  L         +
Sbjct: 361 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQ 420

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           + + + LKQ+  ++  +       +  I  + +  +Q  A       L  +++E++  + 
Sbjct: 421 QEYEDRLKQMQEEMERSQRDLLEAQEMIRRLEEQLKQLQAA---KDELELRQKELQSMLQ 477

Query: 604 QVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
           ++      E      L   +     ++ +I+ +
Sbjct: 478 RLEEAKNMEAVEKAKLEEEIMAKQQEVQRIQDE 510


>gi|195042307|ref|XP_001991407.1| GH12073 [Drosophila grimshawi]
 gi|193901165|gb|EDW00032.1| GH12073 [Drosophila grimshawi]
          Length = 645

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEK 600
            E+   +  ++  +    A   +   +    D  +  Q+ +   +R           +E+
Sbjct: 382 EEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEEMERSQRDLLEAQEMIRRLEE 441

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Q+ Q+ A  +  +       L  +  ++ + ++ EA+
Sbjct: 442 QLKQLQAAKDELELRQ--KELQSMLQRLEEAKNMEAV 476



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 94/273 (34%), Gaps = 7/273 (2%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K + ++     +           E+          +LE++  N    I+++K    +
Sbjct: 230 DQHKMSKDEWEQSIMTWWQEHRSMLREDAMMEYLKIAQDLEMYGVNYFE-IRNKKGTDLW 288

Query: 425 SQAIRDRLQQLFQKYI-TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                  L    Q    T   G+     +N    ++K   + + + +      + +  + 
Sbjct: 289 LGVDALGLNIYEQDDRLTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRIN 348

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  L L + NH   ++ +  +  D++    + ++  +    +  + +  L         +
Sbjct: 349 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQ 408

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           + + + LKQ+  ++  +       +  I  + +  +Q  A       L  +++E++  + 
Sbjct: 409 QEYEDRLKQMQEEMERSQRDLLEAQEMIRRLEEQLKQLQAA---KDELELRQKELQSMLQ 465

Query: 604 QVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
           ++      E      L   +     ++ +I+ +
Sbjct: 466 RLEEAKNMEAVEKAKLEEEIMAKQQEVQRIQDE 498


>gi|170589067|ref|XP_001899295.1| AT08590p [Brugia malayi]
 gi|158593508|gb|EDP32103.1| AT08590p, putative [Brugia malayi]
          Length = 546

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 82/234 (35%), Gaps = 24/234 (10%)

Query: 415 IKDQKLRYYYSQAI---RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           I DQ+L   Y + I     +   + +K +       R  ++    R +    Q+L ++  
Sbjct: 74  ISDQELISLYEERIPHSSVKYDDVLRKAVFLLREKTRIEEEVLGLRARNESLQQLNKTIR 133

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            K       + +E   +  ++       ++ Q+L +              L   + +++ 
Sbjct: 134 EKSVRLHAKAEQEEEFISNML------LKRIQKLKND----------KEALALKYEQEEE 177

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
           FL  ++ ++L +        +L  QV     W    +  +V +R+   +  A +     L
Sbjct: 178 FLTNDLTRKLSQ--LQNERDELAGQVEAEQSWVV--DTLLVKIRKLEAEISANHTALEQL 233

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
            R+K ++E  + +   +         +  L     ++     Q ++ +     S
Sbjct: 234 RREKVDLENAL-EHEQESLFNTLGKRMDQLEAEKRRMQARLDQASLSDDHSPSS 286


>gi|159487533|ref|XP_001701777.1| ClpB chaperone, Hsp100 family [Chlamydomonas reinhardtii]
 gi|158280996|gb|EDP06752.1| ClpB chaperone, Hsp100 family [Chlamydomonas reinhardtii]
          Length = 1040

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 79/210 (37%), Gaps = 16/210 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           ++KYI +     R +++    +     +  +++    + ++     + ++AL+   +   
Sbjct: 447 YRKYIEKDPALERRFQQVYVDQPNVAQTVSILRGLRERYEVHHGVRISDSALVEAAVLSD 506

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S  +       + +   + +      L     
Sbjct: 507 RYIADRFLPDKAIDLVDEAAAKLKMEITSKPLALDEIDRKVLQLEMEK------LSLTKN 560

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------QIAQVTAK 608
             R A    A  +A + D+++  +     +++ +    + +++++       +IAQ    
Sbjct: 561 SDRAAAARLAALDAELDDLKEQQKVITGQWRKEKDDMGRVQDLKEEIERVNIEIAQAERT 620

Query: 609 GEAEKTAIL-ISILHEVHIQIHQIESQEAM 637
            +  + A L    LH +   +    ++EA+
Sbjct: 621 YDLNRAAELKYGTLHSLQQSLKA--AEEAL 648


>gi|157138597|ref|XP_001664271.1| hypothetical protein AaeL_AAEL003882 [Aedes aegypti]
 gi|108880559|gb|EAT44784.1| conserved hypothetical protein [Aedes aegypti]
          Length = 2308

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 42/111 (37%), Gaps = 6/111 (5%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
                +++       + +RL E    F EL   L+RQ++          A    V+   + 
Sbjct: 921  LETRLDETARECSALRRRLQEEQDRFRELTTHLERQMQTTKQRMEEEMAIAETVQAELKN 980

Query: 581  ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQ 630
            A    +     SR+ +++ K++ +  +  + +         + E+  ++ +
Sbjct: 981  ARDELEIK---SRKIDDLSKKLQETLSPNDEDNPVTQAFKKIRELEQKLSE 1028


>gi|15677992|ref|NP_273540.1| DNA helicase, truncation [Neisseria meningitidis MC58]
 gi|66731925|gb|AAY52158.1| DNA helicase, truncation [Neisseria meningitidis MC58]
 gi|308388692|gb|ADO31012.1| putative replicative DNA helicase [Neisseria meningitidis alpha710]
          Length = 161

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 42/131 (32%), Gaps = 12/131 (9%)

Query: 475 KLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            L       E ++L   ++ +PA        ++   +  +E + ++  +     E +   
Sbjct: 18  SLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIAKLINESRPAD 76

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              + + L      E     +  +  A    +              +  A   R R + R
Sbjct: 77  VITVQEDLQRNEELEAAGGFEYLITLAQNTPSAANI----------RRHAEIVRERSIMR 126

Query: 594 QKEEIEKQIAQ 604
           Q  E+  +IA+
Sbjct: 127 QLAEVGTEIAR 137


>gi|327480470|gb|AEA83780.1| chromosome segregation SMC protein, putative [Pseudomonas stutzeri
           DSM 4166]
          Length = 1162

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 81/235 (34%), Gaps = 13/235 (5%)

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
           +      + ++ R +    ++ RL     +         R  ++ A  ++Q+      + 
Sbjct: 691 RELQRRQQQEEARKH--SDLKARLSAGQARLEQLALRRRRLDEELAEQQEQREIETEQLG 748

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            + ++ + + +   ++     TL+     ++E+   +      + +     +        
Sbjct: 749 EARLQLQEALETMAQDTEQRETLLASRDGIRERLDRIRQDARQHKDHAHQLALRVGSLRA 808

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL------ 582
           Q     + + +RL ++ F   +++ ++   +     A  E   + + +  ++ +      
Sbjct: 809 QHESTRQAL-ERLEQQ-FERAVERREQLTLNLEEGEAPLEELRMKLEELLERRMGVEDEL 866

Query: 583 -ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL--HEVHIQIHQIESQ 634
                      R+  + EK+  Q   + +  +  +    L    + ++ + ++ Q
Sbjct: 867 KHARLALEDADRELRDAEKRRTQAEQQAQLLRGQLEQQRLDWQGLSVRRNALQDQ 921



 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 2/103 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELER 203

Query: 601 QIAQVTAKG-EAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           Q+ ++  +   AEK     +   ++  Q+  +  Q A+ E  G
Sbjct: 204 QLERLHRQAQSAEKYQEYKAEERQLKAQLSALRWQ-ALNEQVG 245


>gi|327283209|ref|XP_003226334.1| PREDICTED: Golgin subfamily A member 3-like [Anolis carolinensis]
          Length = 1512

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 55/407 (13%), Positives = 132/407 (32%), Gaps = 38/407 (9%)

Query: 260  KSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVL 319
            K   + ++       ++VE Y        A  ++ + S   A  +     + +L   ++ 
Sbjct: 845  KKQTQKIKEQLLQQKVMVEAYR-----RDASSKDQLISELKATKKRLDSEMKELRRELLH 899

Query: 320  CFDG----DDPGLRAAYKAIDLVLCHLIPGNRVNFVL-LSRGEDPDSFIRCYGKTAFEKL 374
              D     D    + A +   +        +++        G + +     + +     L
Sbjct: 900  LRDEKKSVDIENAKLAKEVSRVQKQLEELESQLQVAQRERDGMEAELQSVQFDREQMSVL 959

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQAIRDRLQ 433
               +   +        +       +++ +++    +     KD K +   Y  A+    +
Sbjct: 960  AETNET-LKRQIDEMQQETKMAITEQKQKMKRLGSDLTTAQKDMKAKHKAYENAVGILSR 1018

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGP--SQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            +L +    + S      K  A+  D       +++         LS    + E  L   +
Sbjct: 1019 RLQEALTAKESSEAELNKLKAQISDSNIICLQEKIQALETELQVLSHSKMVLEKELQEVI 1078

Query: 492  INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
                  L+E  +++ ++  +  E +     +       K    E  H+R    G G+   
Sbjct: 1079 SLTSQELEEYREKVLELEDELQEARGFRRKIKRLEEMNKKLALELEHERGKLTGLGQSNA 1138

Query: 552  QLDRQVRDAGLWSATTEANI--------------VDVRQGYQQALALYKRFRLLSRQK-- 595
             L    R      A  EA++               +  Q  +Q +   +    L R+K  
Sbjct: 1139 ALREHNRILEAALAKREADLVQLNLQVQAVLKRKEEEDQQMRQLIQALQ--TALEREKTK 1196

Query: 596  -EEIEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             +++++QI  A+  A             L EV  ++   ++++A+I+
Sbjct: 1197 VKDLKEQIVTAKAEAAHNRRHYKAAALELSEVQREL---QAKDALIQ 1240


>gi|326910955|ref|XP_003201829.1| PREDICTED: Golgin subfamily B member 1-like [Meleagris gallopavo]
          Length = 3224

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 90/265 (33%), Gaps = 20/265 (7%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            +   K E E+   +      +LE  +    +  ++     ++ Q    +L++  ++ + +
Sbjct: 1566 NANLKEELESSRRDYQSLSTQLEAVMVEKESLTQEITDLKHHLQLTESKLEES-RELLDK 1624

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
            +       ++  +      P +R      +  +     +  E        + P  L    
Sbjct: 1625 YVSLKTTEEETNQAVATPPPIERSENQMDLNFRPKSPNAELEQKAFEVGSSPPEDLNTYV 1684

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
            +E+A++     EL++          EQ+      I + L       L  Q++ +V +  +
Sbjct: 1685 KEIAELTERITELEESRRA-----SEQQLDDIRRIVEALEGEK-RALEAQMEAKVLELNV 1738

Query: 563  WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------------AQVTAKG 609
               T       V+   +  + + +    L  +K+++E+++              Q  A  
Sbjct: 1739 LQDTVAKMEETVQNTKEDLIRMTELKDALEAEKDDLEERLMNQLAELNGSIGNYQQDATD 1798

Query: 610  EAEKTAILISILHEVHIQIHQIESQ 634
               +   L   L  +   + ++E +
Sbjct: 1799 SQIENEQLKHELQSLQRAVRELEEE 1823


>gi|297675084|ref|XP_002815526.1| PREDICTED: ankycorbin-like isoform 5 [Pongo abelii]
 gi|297675086|ref|XP_002815527.1| PREDICTED: ankycorbin-like isoform 6 [Pongo abelii]
          Length = 909

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 97/286 (33%), Gaps = 27/286 (9%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 523 KAFLFERYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 580

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 581 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLN 640

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 641 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 699

Query: 540 RLCERG------------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           +L E              + +L   L+ +V    L    +      V     Q       
Sbjct: 700 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLALKLKESVKEKEKVHSEVVQI---RSE 756

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
              + R+KE I+  +     K + ++   L+    +   ++ +++ 
Sbjct: 757 VSQVKREKENIQTLL-----KSKEQEVNELLQKFQQAQEELAEMKR 797


>gi|292670239|ref|ZP_06603665.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648191|gb|EFF66163.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 834

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 61/215 (28%), Gaps = 10/215 (4%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y     +RL+ +    I   +      + +   R           + L       +  + 
Sbjct: 262 YRGEFEERLKNVVDDVIKAKNIILFIDEIHTLIRAGGAEGSLDAANILKPALARGEMQII 321

Query: 484 EAALLLTLINH---PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            A  L     H    + L  ++Q +          +++   L   + E  +         
Sbjct: 322 GATTLSEYKKHFAKDSALARRFQTVMVEEPSEKSAEQILFGLREKYEEFHH-------AH 374

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +      ++   R + D  L     +       +   + +    R   L  +  E  K
Sbjct: 375 IEDTAVAAAVRLSKRYITDRFLPDKAIDLMDEAASRVRMKNIGGTDRLTELRTEIAETVK 434

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +     +  + E+ A L     E+  ++ +    E
Sbjct: 435 EKDAAISGQDYEEAARLRDREQELRARLEESRRGE 469


>gi|260592293|ref|ZP_05857751.1| ATP-dependent chaperone protein ClpB [Prevotella veroralis F0319]
 gi|260535743|gb|EEX18360.1| ATP-dependent chaperone protein ClpB [Prevotella veroralis F0319]
          Length = 862

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 70/264 (26%), Gaps = 34/264 (12%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R       E L  + L  +DM              +    +   +     +I        
Sbjct: 220 RIVRGDVPENLKDKQLYSLDMGAMLAGAKYKGEFEERLKSVVKEVMQADGNI------IL 273

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           +   I   +     +   + +   +        R     +    Q    K K        
Sbjct: 274 FIDEIHTLVGAGGGEGAMDAANILKPALARGELRAIGATTLNEYQKYFEKDKA------L 327

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      +++ P  L                   +   L   +             R+ +
Sbjct: 328 ERRFQTVMVDEPDELDAI---------------SILRGLKERYENHHKV-------RIQD 365

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 +K  +R + D  L     +       +   +  ++ +    ++R+ +++E +  
Sbjct: 366 DACIAAVKLSERYISDRFLPDKAIDLMDEAAAKLRMERDSVPEELDEITRRLKQLEIERE 425

Query: 604 QVTAKGEAEKTAILISILHEVHIQ 627
            +  + + EK A L   + E+  Q
Sbjct: 426 AIKREDDKEKIAQLDKEIAELKEQ 449


>gi|221487279|gb|EEE25511.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 573

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 69/221 (31%), Gaps = 8/221 (3%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           Q +  R +Q   +   E                ++      ++  L    L      +E 
Sbjct: 180 QPLAQRQKQQQSELEEELRQRHSELGALMEEFKERQAVHGRLELELGDLVLELMNLKQER 239

Query: 486 ALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             L   +++ P    +  +   ++R     L      L +    Q+  L          +
Sbjct: 240 EELHDQVVHSPE---KLMERRDELRVQQKHLDAQLQELENLAASQQKLLLAFAKAVKKAK 296

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-QQALALYKRFRLLSRQKEEIEKQIA 603
              E+L     QV    L   +       + +   +Q   L K  + L  ++EE+ +Q+ 
Sbjct: 297 KAMEILSAHRDQVLAPHLGFRSDMRTREKLFRELGEQKEQLSKAVQDLQAEREELARQLE 356

Query: 604 QVTAKGEAEKTA---ILISILHEVHIQIHQIESQEAMIEGF 641
               K + E+T     L     EV  +   +  Q+ M   F
Sbjct: 357 DQERKKDEEETELRGHLARAKREVEERKKALADQQDMTAAF 397


>gi|195350087|ref|XP_002041573.1| GM16672 [Drosophila sechellia]
 gi|194123346|gb|EDW45389.1| GM16672 [Drosophila sechellia]
          Length = 1250

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 61/237 (25%), Gaps = 19/237 (8%)

Query: 391  ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
            E  +    +    LE   +  ++ I+    R  Y +   DR+++   +  +  S      
Sbjct: 873  EEYTRKRSERLGRLEEESRQLMSRIRRTADRGQYLKKSLDRIRRAPSREASFESNTEEEA 932

Query: 451  KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
               ++       S    +      + + +    E              Q+   +L+    
Sbjct: 933  IPASKSESCPATSPLTAEEEEYTSRRAARIQRMERE-----------SQQLISQLSRNSE 981

Query: 511  DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
                       L   +              + +    + L+ ++R   +        E  
Sbjct: 982  RGENFATKLDTLHEQYGPNSQLDQARSSASVSQT-LEQRLEDIERVSVNRAERLRILELQ 1040

Query: 571  IVDVRQGYQQA-------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
              ++              +          RQ+ E+ +Q         +E +  ++  
Sbjct: 1041 GNELIARLSSTSERGTAMINRIAEREATRRQEAELVEQTVPSEEATSSEASTRIVRH 1097


>gi|189239227|ref|XP_973767.2| PREDICTED: similar to kakapo [Tribolium castaneum]
          Length = 8373

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 74/234 (31%), Gaps = 25/234 (10%)

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
              + + +  +         T      +  K +     Q     +   +++    + ++  
Sbjct: 7497 QEFQRNLSAKQGTYDHVMKTGKVLKEKAPKSDEPTIRQMMSDLKAKWTAVCNKSVDRQRK 7556

Query: 482  LREAAL--------LLTLINHPAILQEQYQELADIRYDNNELQKL---------WSFLFS 524
            L EA L        +  L+     L++  +EL+     + +L  +         +     
Sbjct: 7557 LEEALLYSGQFKDAIAALLQ---WLKKVEKELSVDSPVHGDLDTVNHLVDLHNQFEKELE 7613

Query: 525  DFVEQKY---FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
               EQ         ++ ++       ++  QL          +  T      + +   +A
Sbjct: 7614 RRNEQMESVIRTGTDLERKANRADATQIRSQLTELNELWNSVTKLTRIRSGRLDEALHEA 7673

Query: 582  LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
              L+K   +L     E E+Q+  V +  E E TA     L  +     +++ +E
Sbjct: 7674 ERLHKSVHMLLDWLSEAERQLRFVGSTPEDEATA--YEQLQALDRFRAELKDKE 7725



 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 41/127 (32%), Gaps = 10/127 (7%)

Query: 519  WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
             + +     E      ++I            L++L R++ +        E       +  
Sbjct: 1082 RNAIRRALNE----DADKIMA--EGDPSDPQLRRLKREMDEVNRLFDEFEKRARAEEESK 1135

Query: 579  QQALALYKRFRLLSRQKEEIEKQIAQ---VTAKGEAEKTAILISILHEVHIQIHQIESQ- 634
             Q     ++   L +  +E E+ I +        + +    L+    E   ++  +E + 
Sbjct: 1136 NQTRIFNQQISNLQQALDEAERIINKRVIAHLPRDIDTLQHLVLEHKEFESRLQNLEPEI 1195

Query: 635  EAMIEGF 641
            E + + F
Sbjct: 1196 EQVKDTF 1202


>gi|187956217|gb|AAI50627.1| MYO18B protein [Homo sapiens]
 gi|219841774|gb|AAI44598.1| MYO18B protein [Homo sapiens]
          Length = 2566

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/251 (9%), Positives = 73/251 (29%), Gaps = 28/251 (11%)

Query: 410  NCINHIKDQKLRYYYSQAIRDRLQQLFQ-KYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
                       +        + ++QL Q +   E               DQ+   + + Q
Sbjct: 1688 RLWKLESSALEQQKIQSQQENTIKQLEQLRQRFELEIERMKQMHQKDREDQEEELEDVRQ 1747

Query: 469  SSLVKGKLSKKPSLREAALLLTLINHPA----ILQEQYQELADIRYDNNELQKLWSFLFS 524
            S   +    +    +E      +++       ++     ++    +D    ++L   L  
Sbjct: 1748 SCQKRLHQLEMQLEQEYEEKQMVLHEKQDLEGLIGTLCDQIGHRDFDVE--KRLRRDLRR 1805

Query: 525  --DFVEQKYFLPEEIHQ---RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
                +     L   +      + +    ++  QL++          T +    D+   + 
Sbjct: 1806 THALLSDVQLLLGTMEDGKTSVSKEELEKVHSQLEQSEAKCEEALKTQKVLTADLESMHS 1865

Query: 580  QALALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILIS--------------ILHE 623
            +   + +   L+  Q   ++ + A +      + +    L+                + E
Sbjct: 1866 ELENMTRNKSLVDEQLYRLQFEKADLLKRIDEDQDDLNELMQKHKDLIAQSAADIGQIQE 1925

Query: 624  VHIQIHQIESQ 634
            + +Q+ + + +
Sbjct: 1926 LQLQLEEAKKE 1936


>gi|119510077|ref|ZP_01629217.1| hypothetical protein N9414_19682 [Nodularia spumigena CCY9414]
 gi|119465264|gb|EAW46161.1| hypothetical protein N9414_19682 [Nodularia spumigena CCY9414]
          Length = 661

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 72/231 (31%), Gaps = 20/231 (8%)

Query: 418 QKLRYYYSQ---AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           +  +  Y +    +++    L      +     ++  +  +    +   ++     + + 
Sbjct: 224 KLEQKEYQEVEVQLKELTDNLVVAEKKQQEAVDKFISEGGKIAGDRTYLEKQKSQIVAES 283

Query: 475 KLSKKPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           + S++      A +L   +  P + Q   Q      +   + +  ++ L          +
Sbjct: 284 ENSRQAMRGLAADILPLALIEPLLNQAYLQ--GQKEFRTQQAKVAYNLLLERDHRLIELI 341

Query: 534 PEEIHQRLCERGFGELLKQ---LDRQVRDAGLWSATTEANIVDVRQGYQQAL----ALYK 586
            +            + + +   L +Q     +W  +    +  +       L       +
Sbjct: 342 KQLTIADQQVEKIQDFIDEENNLIKQDTTGEVWLLSDTETLHHLDNIIHHYLPYTKNATQ 401

Query: 587 RFRLLSRQKEE----IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +   L + +EE    +E+QI    +    E    L+  L     ++ + ++
Sbjct: 402 KQLELHQTQEEEVITLERQIQTAAS---PEDYQRLVDELQAAQKEVAEAQA 449


>gi|72003683|ref|NP_001024981.1| Lin-5 (Five) Interacting protein family member (lfi-1)
            [Caenorhabditis elegans]
 gi|37515173|gb|AAQ91890.1| Lin-5 (five) interacting protein protein 1, isoform d [Caenorhabditis
            elegans]
          Length = 2350

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIAQV 605
             E ++++++ + D        E  I +V   +++ L   +  +  L R+  E+E +++Q+
Sbjct: 1055 KERIERIEKNILDRYHDDELVEHKIREVNDRWKRELERLENEKDDLERRIRELEDELSQI 1114

Query: 606  TAKGEA------EKTAILISILHEVHIQIHQI 631
                +       E      + + ++   I  +
Sbjct: 1115 GRGNDKTENDITELKRKHAAEIDKLKSDISAL 1146



 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/315 (9%), Positives = 96/315 (30%), Gaps = 44/315 (13%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     A      ++   ++    +   +   ++ D+  +L   +    N I+++     
Sbjct: 605 KLRASEAERVAAEKARKFLEDELAKLQASFQKSSTDDARKLRDEMDEHTNSIQEEFKTR- 663

Query: 424 YSQAIRDRLQQLFQK---------YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
               +  R++ L ++          + +          + + R ++  +Q      + + 
Sbjct: 664 -IDELNRRVENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRN 722

Query: 475 KLSKKPSLREA---------ALLLTLINHPAILQEQYQELADIRYDNNELQK-------- 517
                  LRE           +L  L +         Q+L +I+   ++ QK        
Sbjct: 723 IQKDLDDLREKYDRVHTDNEKILGELEHAQKAAHLAEQQLKEIKIQRDDYQKQKDEHARH 782

Query: 518 ---LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
              +   L ++   ++                 + +   + Q+      +   +  I   
Sbjct: 783 LFDIRHKLETEIKGRQDLEKNGARNNDELDKLRQTISDYESQINLLRRHNDELDTTIKGH 842

Query: 575 RQGYQQALALYK-------RFRLLSRQKEEIEKQI--AQVTAKGE----AEKTAILISIL 621
           +                  +   L+++ ++ ++ I   ++   G+     E    L + L
Sbjct: 843 QGKITHLENELHSRSGEIEKLNDLNQRLQKEKQDILNQKLKLDGDVQALKETIRKLENEL 902

Query: 622 HEVHIQIHQIESQEA 636
            ++  +  ++  +EA
Sbjct: 903 EKLRNENKELVGKEA 917


>gi|56964440|ref|YP_176171.1| recombination and DNA strand exchange inhibitor protein [Bacillus
           clausii KSM-K16]
 gi|81678829|sp|Q5WEK0|MUTS2_BACSK RecName: Full=MutS2 protein
 gi|56910683|dbj|BAD65210.1| MutS family DNA mismatch repair protein [Bacillus clausii KSM-K16]
          Length = 787

 Score = 39.9 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 15/136 (11%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
           A + +D   L+  +  L         F        L ER   +   Q+D          A
Sbjct: 466 ASVEFDVETLRPTYRLLVGVPGRSNAFAISRRLG-LDERIIDQAKLQIDSDASQVEKMIA 524

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEE--------IEKQIAQVTAKGE------A 611
           + E +    +  + +A A+ +    L R  E+         E  + +   K E       
Sbjct: 525 SLEDSQKSAQSEWSRAEAVRREAEALKRDLEKRMASFEEMKEAALQKAEQKAEKVVAAAQ 584

Query: 612 EKTAILISILHEVHIQ 627
           E   ++IS L ++  Q
Sbjct: 585 ENAELIISELRDLQKQ 600


>gi|326429536|gb|EGD75106.1| lipoprotein [Salpingoeca sp. ATCC 50818]
          Length = 1267

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 68/236 (28%), Gaps = 31/236 (13%)

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             +    + +    ++                K  +            ++    + +    
Sbjct: 921  EKEEAQERVATAQKEKEVAVSALQQQLDALKKTQSEGESALQAQLDALKKEKEEAQERVA 980

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             + +E    ++ +          Q++  ++   +E +           ++K      +  
Sbjct: 981  TAQKEKEAAVSALQ---------QQVDALKKTQSEGESALQAQLDALKKEKEEAVGALQA 1031

Query: 540  RLCE---------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR- 589
            +L                    L ++  +A    AT +    +     QQ + + K+ + 
Sbjct: 1032 QLDALKKEEEEAVGALRAQRDALKKEKEEAQERVATAQKEKEEAVSALQQQVDVLKKEKE 1091

Query: 590  -----------LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                        L ++KEE+++ +     KG  + +      L  +  ++ ++  +
Sbjct: 1092 EAVGALQAQLDALKKEKEELQQAV-DAAKKGSEDASKQSAQELAALKKKVDKLTKE 1146



 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 93/255 (36%), Gaps = 34/255 (13%)

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             +     A++ +L  L +      S          + +++   + R  + +L K K   +
Sbjct: 867  EKEVAVSALQQQLDALKKTQSEGESALQAQLDALKKEKEEAVGALRAQRDALKKEKEEAQ 926

Query: 480  PSLR----EAALLLTLINH--PAILQEQYQELADIRYDNNELQKLWSFLFSDFV---EQK 530
              +     E  + ++ +     A+ + Q +  + ++   + L+K             ++K
Sbjct: 927  ERVATAQKEKEVAVSALQQQLDALKKTQSEGESALQAQLDALKKEKEEAQERVATAQKEK 986

Query: 531  YFLPEEIHQRL------CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-A 583
                  + Q++         G   L  QLD   ++        +A +  +++  ++A+ A
Sbjct: 987  EAAVSALQQQVDALKKTQSEGESALQAQLDALKKEKEEAVGALQAQLDALKKEEEEAVGA 1046

Query: 584  LYKRFRLLSRQKEEIEKQIAQVTAKGEA-----------------EKTAILISILHEVHI 626
            L  +   L ++KEE ++++A    + E                  E    L + L  +  
Sbjct: 1047 LRAQRDALKKEKEEAQERVATAQKEKEEAVSALQQQVDVLKKEKEEAVGALQAQLDALKK 1106

Query: 627  QIHQI-ESQEAMIEG 640
            +  ++ ++ +A  +G
Sbjct: 1107 EKEELQQAVDAAKKG 1121


>gi|281344810|gb|EFB20394.1| hypothetical protein PANDA_012664 [Ailuropoda melanoleuca]
          Length = 957

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 72/220 (32%), Gaps = 15/220 (6%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             ++   +F    +             +        Q     S +K +L    +  + A+
Sbjct: 281 FDNKFDDIFGSSFSSDPFNFNSQNGVNKDEKDHLIGQLYRDVSELKAQLENMKTESQRAV 340

Query: 488 LLTLINHPAILQEQYQEL-------ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           L        +  E  ++         D  +   EL +L          Q+     E   +
Sbjct: 341 LQLKGRVSELDAELAEQRHLRQQAADDSEFLRAELDELKKKREDTEKAQRSLTEIERRAQ 400

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E+ + +L ++    V++                +  +Q     +    L R+K+E+E 
Sbjct: 401 ANEQRYSKLKEKYSELVQNHADLLRKN-------AEVTKQVSVARQAQADLEREKKELED 453

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
              +++ + +  KT   + +L  +  ++   + +  +++G
Sbjct: 454 SFQRISDQAQR-KTQEQMEVLESLKQELATSKQELQIVQG 492


>gi|312112024|ref|YP_003990340.1| ATP-dependent chaperone ClpB [Geobacillus sp. Y4.1MC1]
 gi|311217125|gb|ADP75729.1| ATP-dependent chaperone ClpB [Geobacillus sp. Y4.1MC1]
          Length = 865

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/210 (10%), Positives = 73/210 (34%), Gaps = 16/210 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI +     R +++          +  +++    + ++     + + AL+       
Sbjct: 320 YRQYIEKDPALERRFQQVLVEEPSVEDTISILRGLRERFEVHHGVKIHDRALVAAATLAD 379

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF--------G 547
             + +++     I   +     + + + S   E    +   +   + E            
Sbjct: 380 RYISDRFLPDKAIDLVDEACATIRTEMDSMPSELDEVMRRVMQLEIEEAALRKETDEASK 439

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E L  L +++ D    + + +      ++  Q+   + +      R+ EE E +      
Sbjct: 440 ERLAALTKELADLREKADSMKMQWQQEKEAIQRVRDVREALEKAKRELEEAENE------ 493

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEA 636
             +  + A L    + ++  Q+ Q+E + +
Sbjct: 494 -YDLNRAAELRHGRIPQLEKQLKQLEQEMS 522


>gi|212224573|ref|YP_002307809.1| chromosome segregation protein [Thermococcus onnurineus NA1]
 gi|212009530|gb|ACJ16912.1| DNA double-strand break repair ATPase [Thermococcus onnurineus NA1]
          Length = 884

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 50/435 (11%), Positives = 113/435 (25%), Gaps = 46/435 (10%)

Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306
            L   +             +R   ++  I V    D +            S         
Sbjct: 43  LLIGLYWPSKPKDLKKDDFLRIGGTTTEITVFFEKDGVKYQIHRNITRGLSFVKYHDGSS 102

Query: 307 LRLLWKLSPRIVLCFDG----DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
            R L     ++    +     D        +  ++        +R   V    G D    
Sbjct: 103 WRGLESGQKQVRDWMEKLVPYDVFLNAIYIRQGEIDAILESDESREKVVRQVLGLDRYEN 162

Query: 363 IRCYGKTAFEKLIVESLPLVDM--------LWKRETENRSFNTPDERAELEIHLKNCINH 414
                    +++      + D               E     T     EL   +   I  
Sbjct: 163 AYKNLLEVRKEIDARIRAIEDYLKSTENIDELIGNMEKELAETLKVINELSPEIPKLIKE 222

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
           ++  + R     A+ + +  L  +             K      +   S+  ++    K 
Sbjct: 223 LEGVEKRLRDLDALAEEINALQLETRKREGNVKALEAKLQELEKRIEESRSHLRELEEKV 282

Query: 475 KLSKKPSLREAALLLTL----------INHPAILQEQYQELADIRYDNNELQKLWSFL-- 522
           + S K        L  +           N   + +    +++ I     EL  + + +  
Sbjct: 283 RESNKLKGSAELYLKLVEFRKQYVDEKANGEKLAENYRAQISGIEERLAELSDMKNRIGE 342

Query: 523 --------FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
                        E +  +      R  +     L K+L  +  +    +A  EA     
Sbjct: 343 LEKKREELKKKLAELEESVKAYEEARALKTNLDRLRKRLKFEPEEIERLAAEIEAAKKRK 402

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQI--------------AQVTAKGEAEKTAILISI 620
            +  ++   + ++   L  +  E  K I               ++T +         ++ 
Sbjct: 403 EEIQRELEEINEKRGELKNRVSERNKAIIELKKAKGKCPVCNRELTEEHRKGLMERYLAE 462

Query: 621 LHEVHIQIHQIESQE 635
           + +V  +I +++SQE
Sbjct: 463 VKDVSKEIKELDSQE 477


>gi|123229684|emb|CAM22596.1| 5-azacytidine induced 1 [Mus musculus]
          Length = 1060

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 84/280 (30%), Gaps = 21/280 (7%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           D         +    + + +     +   +R          +++  L    +  +  +K 
Sbjct: 576 DLTVRRVKETEKELTRQLRQQKEQYEATIQRHLS-FIDQLIEDKKVLSEKCEAVVAELKH 634

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R       R+R+ Q+ +++  E            + R +K  +++  +   +  +  
Sbjct: 635 GDQR------CRERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRG- 687

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPE 535
                 E  +   +  H   ++     L +      E Q     L    +  +      E
Sbjct: 688 -----LEPEIQKLIAKHKQEVRRLRG-LHEAELQQREEQAAQRHLRQAEELRQHLDRERE 741

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-QQALALYKRFRLLSRQ 594
            + Q+  ER      + L+++ R            + + ++   QQA         L +Q
Sbjct: 742 VLGQQERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERLGQQAARQRAELEELRQQ 801

Query: 595 KEE----IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            EE    + + +     +   E+       L  +  Q+  
Sbjct: 802 LEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEA 841


>gi|55391517|gb|AAH85236.1| Dmd protein [Mus musculus]
          Length = 749

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 73/250 (29%), Gaps = 6/250 (2%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
               F   I E+    ++L     + +         EL    ++    I+     Y+   
Sbjct: 38  DLEKFLSWITEAETTANVLQDASRKEKLLEDSRGVRELMKPWQDLQGEIETHTDIYHNLD 97

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
               ++ +  +          R    N +  + +  S  +           K+  L    
Sbjct: 98  ENGQKILRSLEGSDEAPLLQRRLDNMNFKWSELQKKSLNIRSHLEASSDQWKRLHLSLQE 157

Query: 487 LLLTL-INHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           LL+ L +    + ++     +   ++  N+  +     L +          E +   L E
Sbjct: 158 LLVWLQLKDDELSRQAPIGGDFPAVQKQNDIHRAFKRELKTK-EPVIMSTLETVRIFLTE 216

Query: 544 RGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
           +    L  L Q  R++         T        +   +   L  R     R+ +E  ++
Sbjct: 217 QPLEGLEKLYQEPRELPPEERAQNVTRLLRKQAEEVNAEWDKLNLRSADWQRKIDEALER 276

Query: 602 IAQVTAKGEA 611
           + ++    + 
Sbjct: 277 LQELQEAADE 286


>gi|46198551|ref|YP_004218.1| fibronectin/fibrinogen-binding protein [Thermus thermophilus HB27]
 gi|46196173|gb|AAS80591.1| fibronectin/fibrinogen-binding protein [Thermus thermophilus HB27]
          Length = 516

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 82/244 (33%), Gaps = 42/244 (17%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R    + +R  L +  ++ I    G G+   +    R    P   L ++ L +   +   
Sbjct: 169 RTLAEEDLRPLLGKPLKEVIRHVDGVGQELMRELARRAGLTPETPLDEAGLGRVYRA--- 225

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
                  L TL+  P++  E  +EL   R+   E + L   L      +   L   +   
Sbjct: 226 -------LKTLVEDPSLRTELSEELRR-RWAEEEKEALRRPLLEALDREIRTLKARLGDY 277

Query: 541 -----------LCERGFGELLKQL------DRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                         R    LL +L        +V   G      E  +       + A  
Sbjct: 278 QEALERLEEAEALRRRADLLLARLKEVPKGAEKVVLEGFDGKPVEIPLDPALSPQENARK 337

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
           LY R     R+ EE+ ++   +  K E        + + E+  +  ++++ +  +EG   
Sbjct: 338 LYDRA----RRLEELAEKALDLIPKTE--------ARIRELEAEKERLKTLD--LEGLLA 383

Query: 644 MSGR 647
           ++ R
Sbjct: 384 LAQR 387


>gi|18859641|ref|NP_542766.1| myosin-7 [Mus musculus]
 gi|81871557|sp|Q91Z83|MYH7_MOUSE RecName: Full=Myosin-7; AltName: Full=Myosin heavy chain 7; AltName:
            Full=Myosin heavy chain slow isoform; Short=MyHC-slow;
            AltName: Full=Myosin heavy chain, cardiac muscle beta
            isoform; Short=MyHC-beta
 gi|16508127|gb|AAL17913.1| beta myosin heavy chain [Mus musculus]
 gi|74141800|dbj|BAE40973.1| unnamed protein product [Mus musculus]
 gi|74142119|dbj|BAE41119.1| unnamed protein product [Mus musculus]
 gi|74150979|dbj|BAE27623.1| unnamed protein product [Mus musculus]
 gi|111309484|gb|AAI21790.1| Myosin, heavy polypeptide 7, cardiac muscle, beta [Mus musculus]
 gi|187957402|gb|AAI58019.1| Myosin, heavy polypeptide 7, cardiac muscle, beta [Mus musculus]
 gi|220941834|emb|CAX16112.1| myosin, heavy polypeptide 7, cardiac muscle, beta [Mus musculus]
          Length = 1935

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1566 NQIKAEIERKLAEKDEEMEQAKRNHLRMVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1626 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1685

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1745

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1746 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1806 KGGKKQLQKLEARVRELENELEAEQKRNA 1834


>gi|332255779|ref|XP_003277007.1| PREDICTED: ankyrin repeat domain-containing protein 24 [Nomascus
            leucogenys]
          Length = 1169

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 62/191 (32%), Gaps = 3/191 (1%)

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
             +  ++ +   S + R  ++    R +    ++ + ++  +    +    RE    + L 
Sbjct: 944  SEALRQSVVPASEHRRLQEEALELRGRAASLEQEVVATGKEAARLRAELERERVCSVALS 1003

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
             H  I+      +A +     EL +          E      E +  +         L  
Sbjct: 1004 EHERIVGTLQANVAQLEGQLEELGRRHE---KTSAEVFQVQREALFMKSERHAAEAQLAT 1060

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
             ++Q+R     +          ++   +A    K+   LS++   +++ + +  A     
Sbjct: 1061 AEQQLRGLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALKEQPAALATP 1120

Query: 613  KTAILISILHE 623
            +   L   + +
Sbjct: 1121 EVEALRDQVKD 1131


>gi|327280594|ref|XP_003225037.1| PREDICTED: serine/threonine-protein kinase TAO2-like [Anolis
           carolinensis]
          Length = 1018

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 102/333 (30%), Gaps = 50/333 (15%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               +   K   ++              R+ EN      +E A L    +        Q 
Sbjct: 560 YKLRKEQLKEELQENQSTPKREKQEWLLRQKENMQHYQAEEEANLLRRQRQYFELQCRQY 619

Query: 420 LRYYYS-------QAIRDRLQ-----------QLFQKYITEHSGYGRYWKKNARHRDQKG 461
            R             +R+ L             L +++ +      R+     R R +  
Sbjct: 620 KRKMLLARHNLDQDLLREELNKKQTQKDLECAMLLRQHESTQELEFRHLHTVQRTRTELT 679

Query: 462 PSQ-RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL-----ADIRYDNNEL 515
             Q +   S+ ++    ++  LR+   +      P  L+ +  ++        +    + 
Sbjct: 680 RLQHQTELSNQLEYNKRREQELRQKHAMEVR-QQPKSLKSKELQIKKQFQDTCKIQTRQY 738

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           + L + L            + I +RL +    +L    ++         +T    + + +
Sbjct: 739 KALRNHLLE---TTPKSEHKGILKRLKDEQTRKLAILAEQYDHSINEMLSTQALRLDETQ 795

Query: 576 QGYQQALALYKRFRLL-----------------SRQKEEIEKQI---AQVTAKGEAEKTA 615
           +   Q L +  +  L                   R+ +E+E+++     +  +   E+  
Sbjct: 796 EAEYQVLRMQLQQELELLNAYQSKIKIHTEAQHEREIKELEQRVSIRRALLEQRIEEEML 855

Query: 616 ILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            L +   +    + + +++E  IE F   S RL
Sbjct: 856 ALQNERSDRIRSLLERQARE--IEAFDSESMRL 886


>gi|194379308|dbj|BAG63620.1| unnamed protein product [Homo sapiens]
 gi|307685645|dbj|BAJ20753.1| syncoilin, intermediate filament protein [synthetic construct]
          Length = 482

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 44/117 (37%), Gaps = 6/117 (5%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QA 581
            +   +      E++ Q+L           L    R +  +      +  D+ + Y+ Q 
Sbjct: 288 LAQLRDAYQKQKEQLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQF 347

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           L L +R    ++  +  + +I ++      E    L +   ++ +Q   +E Q A++
Sbjct: 348 LRLLERKEAGTKALQRTQAEIQEM-----KEALRPLQAEARQLRLQNRNLEDQIALV 399


>gi|146421655|ref|XP_001486772.1| hypothetical protein PGUG_00149 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 301

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-----AILISILHEVH 625
             D+    ++ L   +R + LS + E ++ +  ++   G   +        L S L E+ 
Sbjct: 163 DGDLMDNLEKKLREQQRQQELSEELEALQARKKELQENGGTNEIIDATKERLESELQELR 222

Query: 626 IQIHQIESQE 635
            ++ + E+ E
Sbjct: 223 DRLAKAENDE 232


>gi|126309641|ref|XP_001375873.1| PREDICTED: similar to coiled-coil alpha-helical rod protein 1
           [Monodelphis domestica]
          Length = 1016

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 92/285 (32%), Gaps = 28/285 (9%)

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
                 +  E                L+N +  +++   +      + +RL    ++  T
Sbjct: 646 WQQQQTKVAEEHVKLVAHAVNSSHNWLQNRVAKVEEAVSQ---LPRLNNRLGYATRQIRT 702

Query: 442 EHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
                 R     +  + +    P    M   L + K  +K    E  L   LI       
Sbjct: 703 IQGLVARKIALAQLHQEQSSPAPLSEEMGLELQQLKEERKRLDEELQLSARLIQQEVGRA 762

Query: 500 EQYQELADIRYDNNELQKLWSFLF--------------SDFVEQKYFLPEE--IHQRL-- 541
            +  E   IR  N E ++L   L               +  + QK    E   + + L  
Sbjct: 763 REQGEAERIRL-NEEARQLEQELQKTQESLAEVGIQLQAARMSQKESTEEAACLRRELTQ 821

Query: 542 -CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E     L  ++           +  E  + + R+ + +A+   ++ +  + + +E  +
Sbjct: 822 QQEAYGRALQDKVAEVETRLREQLSEMERRLNEARREHAKAVVSLRQAQRQAVRDKERNQ 881

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           ++ ++  + + E+   L   L E+    + +    A ++  G +S
Sbjct: 882 ELGRLQEEAQREEGVRLRQRLQELERDKNLM---LATLKQEGLLS 923


>gi|47220539|emb|CAG05565.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 3514

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 81/231 (35%), Gaps = 26/231 (11%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS----QRLMQSSLVKG 474
             L+ Y    +  R  Q  ++ +       R  +   +  ++   +    +RL   +  + 
Sbjct: 2558 VLQKYARAWLVRRRFQTMRRLVINVQLSYRVQQLRKKIEEKNRDNLGLMERLTSEANARS 2617

Query: 475  KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
            + + +    EA L        +    + +   D      +++ +   +     +      
Sbjct: 2618 QAADRLHALEAKLEKLANEKASWEARETKVKEDASLVGGDVRSVLETITQQQEDIHLL-- 2675

Query: 535  EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV------DVRQGYQQALALYKRF 588
                 RL ++   E L+       +  +     +          + ++  ++ ++L ++ 
Sbjct: 2676 -----RLEKKTLEERLEASTTLANENNIEILKQDHEKEVETLKEEAKRLKEETISLQRQS 2730

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +   +   ++++QI+Q+T           +  + ++H ++  +++Q   ++
Sbjct: 2731 QEGEQLNADLQEQISQLTKH---------VRTIPDLHRELSNLQNQLISMD 2772


>gi|159116028|ref|XP_001708236.1| Kinesin-2 [Giardia lamblia ATCC 50803]
 gi|157436346|gb|EDO80562.1| Kinesin-2 [Giardia lamblia ATCC 50803]
          Length = 642

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           K    +   ++L  +    L++    ++ D  +           +R+     +A  K   
Sbjct: 463 KESERKAKERQLMAKKIAALIEANKSKMVDKKVLENEERLKDAAIREARNALVAQKKEAE 522

Query: 590 LLSRQKEEIEKQIAQVTA----KGEAEKTAIL-ISILHE-VHIQIHQIESQEA 636
            L ++  E E+Q  Q+        +  +   L ++   E +  +  ++ + EA
Sbjct: 523 RLKKELIEAEQQRKQLEEQCTTALDQAQQLELRLNEYKEQLAERREELHNVEA 575


>gi|332849254|ref|XP_511725.3| PREDICTED: caspase recruitment domain-containing protein 14 [Pan
           troglodytes]
          Length = 962

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 119/369 (32%), Gaps = 30/369 (8%)

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           E   +++   +  +   +          Q ++L +L    VL           A   +DL
Sbjct: 17  ETLWEMMESHRHRIVRCICPSRLTPYLRQAKVLCQLDEEEVLHSPRLTNSAMRAGHLLDL 76

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397
           +      G    F+   +  +PD +    G          S  +              + 
Sbjct: 77  LKTRGKNGAIA-FLESLKFHNPDVYTLVTGLQPDVDFSNFSGLMETSKLTECLAGAIGSL 135

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            +E  + +   +  +   +  +     ++   + L QL   +         ++ +  R +
Sbjct: 136 QEELNQEKGQKEVLLRRCQQLQEHLGLAETRAEGLHQLEADHSRMKREVSAHFHEVLRLK 195

Query: 458 DQKGPSQRLMQSSLVKGKLSK---KPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
           D+         ++L + +L+    +    E  LL   +    ++     EL +       
Sbjct: 196 DEMLSLSLHYSNALQEKELAASRCRSLQEELYLLKQELQRANMVSSCELELQEQSLRTAS 255

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
            Q+      +   E+                  E L+ L   + +  +   + +      
Sbjct: 256 HQESRDEELNRLKEEN-----------------EKLRSLTFSLAEKDILEQSLDEARGSR 298

Query: 575 RQGYQQALALYKRFRLLSRQKEEI-------EKQIAQVTAKGEAEKTA--ILISILHEVH 625
           ++  ++  +L +R     RQ+E+        +++I+Q   + ++ +     L   + E+ 
Sbjct: 299 QELVERIHSLRERAVAAERQREQAYSARDSAQREISQSLVEKDSLRRQVFELTDQVCELR 358

Query: 626 IQIHQIESQ 634
            Q+ Q++++
Sbjct: 359 TQLRQLQAE 367


>gi|324500006|gb|ADY40017.1| Myosin-4 [Ascaris suum]
          Length = 1969

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 73/255 (28%), Gaps = 13/255 (5%)

Query: 391  ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
              ++    +E+              +D+    YY     ++   L Q    E +      
Sbjct: 1648 AQKNLRRYNEQIREIQLQIEEEQRQRDEMKEQYYG---AEKRAALLQSEKEELAAACEQA 1704

Query: 451  KKNARHRDQKGPSQRLMQSSLVK--GKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
            ++  +  +      R   + L+     L+      E  L     +    L E      + 
Sbjct: 1705 ERARKQAELDAADGRERANELIAQTSSLNATKRKLEGELQAIHADLDETLNEFRTSEENC 1764

Query: 509  RYDNNELQKLWSFLFSDFVEQKYFLP-----EEIHQRLCERGFGELLKQLDRQVRDAGLW 563
            +    ++++L   +  +     +        E   + L  +        L    +     
Sbjct: 1765 KKATADVERLADEVRQEQEHAAHIDRLRQGLEAQIRELQVQLDEAEQAALKGGKKVIAKL 1824

Query: 564  SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH- 622
                     ++    +      K      RQ  E++ Q+ +   K   E+   L+  L  
Sbjct: 1825 EQRAHELEGELDGEQRHYQESIKNVAKAERQVRELQFQVDE--DKKNFERMQDLVEKLQS 1882

Query: 623  EVHIQIHQIESQEAM 637
            ++  Q  Q+E  E +
Sbjct: 1883 KIKTQKKQLEDAEEL 1897



 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 66/213 (30%), Gaps = 9/213 (4%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             DR +   Q+ I E +            + +    +R  + + ++  + +     E  L 
Sbjct: 1141 ADRAKSDLQREIEELNERLDEQGGATEAQIEINK-KREAELAKLRRDIEEANMNHEGQLA 1199

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                 H   + E   +L  I     +L+K  + +  D       L  E   +       +
Sbjct: 1200 TLRKKHGDAVAELADQLDMIEKQRQKLEKEKAQIVHDSENLAAQLDSETAAKSNNEKLAK 1259

Query: 549  LLK--------QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             L+        + D Q R    +++       +     +Q   L ++   L R K ++  
Sbjct: 1260 QLEMQLADLQGKADEQSRQLQDFASIRNRLANENADLNRQLEDLEEQLGALQRVKAQLST 1319

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            Q+       + E            + QI   ++
Sbjct: 1320 QLEDTRQAADDEARERQTLAAQAKNFQIEAEQA 1352



 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 87/270 (32%), Gaps = 12/270 (4%)

Query: 379  LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438
               V+   + + E       + +  LE    +     K +       + +   + +L   
Sbjct: 1578 RSEVEKRIQEKEEEFDSTRRNHQRALESMQASLEAESKGKTELLRVKKKLEADINELEIA 1637

Query: 439  YITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
                +       K   R+ +Q +    ++ +    + ++ ++    E    L       +
Sbjct: 1638 LDHANKANADAQKNLRRYNEQIREIQLQIEEEQRQRDEMKEQYYGAEKRAALLQSEKEEL 1697

Query: 498  L---QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQ 552
                ++  +       D  + ++  + L +           ++   L        E L +
Sbjct: 1698 AAACEQAERARKQAELDAADGRERANELIAQTSSLNA-TKRKLEGELQAIHADLDETLNE 1756

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA---KG 609
                  +    +A  E    +VRQ  + A  + +  + L  Q  E++ Q+ +      KG
Sbjct: 1757 FRTSEENCKKATADVERLADEVRQEQEHAAHIDRLRQGLEAQIRELQVQLDEAEQAALKG 1816

Query: 610  EAEKTAILISILHEVHIQI--HQIESQEAM 637
              +  A L    HE+  ++   Q   QE++
Sbjct: 1817 GKKVIAKLEQRAHELEGELDGEQRHYQESI 1846


>gi|307344768|gb|ADN43902.1| synaptic nuclear envelope 2 [Microtus ochrogaster]
          Length = 4345

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 68/223 (30%), Gaps = 18/223 (8%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            ++L  L  +       +     +    + +   + + + S L  G ++      EA L  
Sbjct: 3967 EQLDTLTGQQPGAFDRWELIQAQELHGKLRIKENAQRLNSDL--GAITAWLEKTEAELEA 4024

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFG 547
              +  P        ++ ++     +LQ++     +              + L        
Sbjct: 4025 LRLAEP------PSDVQEMSLRVKKLQEILKAFATYKALMASVNVSH-KESLPSESPEST 4077

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT- 606
            EL  +L +            ++   D+RQ   Q    ++  + L       E +  +   
Sbjct: 4078 ELQNRLHQLSLSWDTVQGVMDSWREDLRQSLMQCQDFHRLSQDLLLWLASAESRRQKARV 4137

Query: 607  ---AKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
                + + E        L ++  ++   + Q + ++     SG
Sbjct: 4138 VASPEADREVLLECQKELMQLEKELEDRQPQASSLQ---ISSG 4177


>gi|261332017|emb|CBH15010.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972]
          Length = 1719

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 75/216 (34%), Gaps = 23/216 (10%)

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              R    +A  +R++QL ++         +   + ++    +  S     S+     L  
Sbjct: 1069 TQRDEALRAKDERIRQLEKELRAA-HREVKAALEESKKSSSRLHSDSTQTSAEELRSLMT 1127

Query: 479  KPSLREAALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            K   RE   L    N   + +++ + L   +   +++L+K                 +++
Sbjct: 1128 KAREREKEKLK---NESKLYRKENESLKERLSETDDQLKK--------SSSLDEEEKQKV 1176

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              R  E+     + +L+  V                +R   ++   L K  R   R+ + 
Sbjct: 1177 LSRYEEKDVKPRVARLEEAVTQRD----------EALRAKDERIRQLEKELRAAHREAKS 1226

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
              +   + +++  ++ T      L  +  ++ ++E+
Sbjct: 1227 ALEDGRRNSSRLHSDSTQTSAEELRSLKTKMDEMEN 1262


>gi|296815110|ref|XP_002847892.1| calmodulin-binding coil-coil protein [Arthroderma otae CBS 113480]
 gi|238840917|gb|EEQ30579.1| calmodulin-binding coil-coil protein [Arthroderma otae CBS 113480]
          Length = 1245

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 78/249 (31%), Gaps = 27/249 (10%)

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR--------DRLQQLFQKYITEHSGY 446
               +   +L+  L +  + ++ +  + ++ +++          RL  L  +   +    
Sbjct: 500 HRLQERIEDLKQELSSTKSDLQHELEQAHHEKSVAIRDQKSALSRLNALEDELRQKGDTK 559

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
                ++    ++    Q  +  +       +  +  E     +L     + Q    EL 
Sbjct: 560 SLLQNRHDALTNETQALQNDLDRAKKAIADLEDEAAAERQ--ESLNTIEEMRQRHKDELD 617

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            +     +L+  W  +      ++    +          +   +  L +           
Sbjct: 618 RLNTQITQLRHKWENIKRSLELERDRAVQ------QAEAYKRTIDSLQQMETTKSGR--- 668

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            E  + D+    +Q     ++  LL+RQ +E+   I+      E +++      +  +  
Sbjct: 669 -EKRLQDIIDSEKQ--RRLQQEELLTRQIKELNDDISSRREASETQRS-----EMLSLKE 720

Query: 627 QIHQIESQE 635
           Q+     +E
Sbjct: 721 QLRVSRREE 729


>gi|256077472|ref|XP_002575028.1| hypothetical protein [Schistosoma mansoni]
 gi|238660251|emb|CAZ31261.1| expressed protein [Schistosoma mansoni]
          Length = 2178

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 36/348 (10%), Positives = 94/348 (27%), Gaps = 15/348 (4%)

Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347
            A     +              L  +     +  +      + A  ++      +     
Sbjct: 21  NADYYCQLFLDANVEDWNDNDRLRHVFQITQVLLNLKWDQWKLAETSLSDKTSEINSLKD 80

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
               L    +D    I   G           L    +  + E E+               
Sbjct: 81  QIRELEHENKDLQKAISASGLDRGSIGETRRLEFKVVKLQSELESLRIAK----DASFKE 136

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
            +  +N   D + +          LQ+  +    +      ++ ++    + +     L 
Sbjct: 137 KEELLNEKGDLERKVELVSRENKELQERCEYLHLQLQDRPSFFGRSNEEANYRKEISSLR 196

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDF 526
               V+          +  L     N    L+   ++ + +I    ++  K+   L    
Sbjct: 197 AKIRVQKAEIDGLEDEKQNL----WNDVNRLESNLRQASMEIDRATDDYVKMKEALTEAD 252

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                   E    R        L +++        L  +  E  I + ++          
Sbjct: 253 KSHAEKSAECSMLR---AQLANLSEKIGHPEETNNLIMSVVEQKIEEWKEILTDKDMEIV 309

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +   L+ + +E  +++  + A  +      L++ + +  +QIH ++ Q
Sbjct: 310 K---LNERIKEFSQELRDLKADSDKTSVQALMNSIKDRDVQIHSLKKQ 354


>gi|198431763|ref|XP_002124429.1| PREDICTED: similar to spectrin repeat containing, nuclear envelope 1
            [Ciona intestinalis]
          Length = 8041

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 60/214 (28%), Gaps = 10/214 (4%)

Query: 396  NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
               +E A +   + +          +      I  + + L +  +              +
Sbjct: 5740 EMEEEVASIAKAVADLRASSSAPDDKISILDQIEKKRRILRRLQLWREKLEEVKNNHPYQ 5799

Query: 456  HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
                  P +R              P L      L  +  P    +   +L      ++  
Sbjct: 5800 LSPSPSPRKRYEAEDKPYDVNVDVPKLA-----LHTLREPVHAVKVADDLDSQ--IDDVE 5852

Query: 516  QKLWSFLFSDFVEQKYFLP-EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++ + L       +     E+    L +    E  ++LD  +  A    ++  +   D 
Sbjct: 5853 MEVTAQLLELEALARDHDAYEDEISHL-DAQLKEAKRKLD-DLTSARKPGSSRTSTPRDA 5910

Query: 575  RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            R+   Q   L        RQ EE+ K+  +   +
Sbjct: 5911 REQLDQYRKLTDDVEKYERQIEELRKRAQEDQEQ 5944


>gi|187956918|gb|AAI58071.1| Myh7 protein [Mus musculus]
          Length = 1935

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1566 NQIKAEIERKLAEKDEEMEQAKRNHLRMVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1626 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1685

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1745

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1746 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1806 KGGKKQLQKLEARVRELENELEAEQKRNA 1834


>gi|149048131|gb|EDM00707.1| lamin A, isoform CRA_a [Rattus norvegicus]
          Length = 574

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|119619244|gb|EAW98838.1| oral-facial-digital syndrome 1, isoform CRA_d [Homo sapiens]
          Length = 1013

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 89/227 (39%), Gaps = 16/227 (7%)

Query: 418 QKLRYYYSQAIRDRLQ-QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +     Y + I ++L+ ++ QK            K  A+ + +K  +             
Sbjct: 197 EIKLNEYKREIEEQLRAEMCQKLKFFKDTEIAKIKMEAKKKYEKELTMFQNDFEKACQAK 256

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           S+   LRE + L  +  H  ++ E  +  A  +    ++  L      +   ++     E
Sbjct: 257 SEALVLREKSTLERIHKHQEVI-ETKEIYAQRQLLLKDMDLLRG---REAELKQRVEAFE 312

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----QALALYKRFRLL 591
           ++Q+L E     + + L RQ ++   +  T +  + +    YQ       +    R    
Sbjct: 313 LNQKLQEEKHKSITEALRRQEQNIKSFEETYDRKLKNELLKYQLELKDDYIIRTNRLIED 372

Query: 592 SRQKEE----IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            R+ +E    +++++  + +K   E+    ++ + E+ +++  +++Q
Sbjct: 373 ERKNKEKAVHLQEELIAINSK--KEELNQSVNRVKELELELESVKAQ 417


>gi|149037809|gb|EDL92169.1| hook homolog 2 (Drosophila) [Rattus norvegicus]
          Length = 717

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 86/272 (31%), Gaps = 32/272 (11%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  DE  +     +     +   + R    Q +R +++QL ++         +   +  R
Sbjct: 295 DEMDELRQSSERARQLEATLNSCRRRLGELQELRRQVRQLEERNAGHAERTRQLEDELRR 354

Query: 456 HRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLT--LINHPAILQEQYQEL----ADI 508
               +     +  Q   ++G+  ++    E  L     L     +L ++ + L      +
Sbjct: 355 AGSLRAQLEAQRRQMQELQGQWQEEAMKAEKWLFECQNLEEKCDLLTKEKERLLTERDSL 414

Query: 509 RYDNNELQ--KLWSFLFSDFVEQKYFLP---EEIHQRLCERGFGELLKQLDRQVRDAGLW 563
           R  N EL+  +L     +         P   E +   +      E L +L  + +     
Sbjct: 415 RETNEELRCAQLQPRGLNQAGLSLDPTPSGLENLAAEILPAELRETLVRLQLENKRLCQQ 474

Query: 564 SATTEANIVDVRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKGE-- 610
            A       ++++  ++A                +   L  Q EE++K + +   K +  
Sbjct: 475 EAADRERQEELQRHLEEANRARHGLEAQQRLNQQQLSELRAQVEELQKALQEQGGKTDDP 534

Query: 611 -------AEKTAILISILHEVHIQIHQIESQE 635
                   +    L     E+  +   IE  E
Sbjct: 535 TLLKRKLEDHLQKLHEADLELQRKREYIEELE 566



 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 89/283 (31%), Gaps = 18/283 (6%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +  ++     A ++L+ +  P               N  +   +   +        +   
Sbjct: 139 EESVQHVVMEAIQELMTKDTPD---------SLSPENYGNFDTQSRRYYFLSEEVEEGGD 189

Query: 420 LRYYYSQA------IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           L+ +Y         + +  Q L Q+        GR   ++A     K       Q   ++
Sbjct: 190 LQQHYLDLERQLVLLSEEKQSLAQENAALRERVGRSEVESASGLTAKKLLLLQSQLEQLQ 249

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +  +  S RE   L  +     + + Q +  A       E Q L   +       +   
Sbjct: 250 EENFRLESSREDERLRCVELEREVAELQQRNQALASLS-QEAQALKDEMDELRQSSERAR 308

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             E     C R  GE L++L RQVR     +A        +    ++A +L  +     R
Sbjct: 309 QLEATLNSCRRRLGE-LQELRRQVRQLEERNAGHAERTRQLEDELRRAGSLRAQLEAQRR 367

Query: 594 QKEEIEKQIAQVTAKGEAEKTA-ILISILHEVHIQIHQIESQE 635
           Q +E++ Q  +   K E        +    ++  +  +    E
Sbjct: 368 QMQELQGQWQEEAMKAEKWLFECQNLEEKCDLLTKEKERLLTE 410


>gi|118399623|ref|XP_001032136.1| Toprim domain containing protein [Tetrahymena thermophila]
 gi|89286474|gb|EAR84473.1| Toprim domain containing protein [Tetrahymena thermophila SB210]
          Length = 1088

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 39/333 (11%), Positives = 94/333 (28%), Gaps = 30/333 (9%)

Query: 58  SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117
             G + CF C + G    F        +            + +       +  ++ Q + 
Sbjct: 157 QSGQFNCFRCGIHGSWWDF----KNLLYK----------NISINDFRNYSQNYQQQQEER 202

Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177
           +   E     +H+ L    DK ++                 + +    +Y +        
Sbjct: 203 MDDSEYY--LYHNQLF---DKEVYKEELNYICGKENSTQRHINFETLVKYKIGIGKEDFI 257

Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237
             E  +I+  ++          +   +         + +      R      S K +   
Sbjct: 258 NKEGDVIKVPVVYFPMFKFEKVEAESSDEDKARDVFQDETNGNSQRITISTNSCKLIKCK 317

Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVR--RNSSSFIILVEGYMDVLSLCQAG-VQNV 294
              +  + K    +        KS    +     ++  +++ EG  D +++ QA  +  V
Sbjct: 318 IRGIGSENKK---YMRVKPSGSKSGIFGLNTVPQNAKELVITEGEYDAMAVNQATGLPAV 374

Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354
               G +    ++    +   +I L  D D+ G     K  + +  H     R   V   
Sbjct: 375 SLPNGASNLPLEVIECLEKIEKIYLWLDNDEVGRNNRQKLAEKLGVH-----RTYIVNTL 429

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
             +D +  +R       + +   +      +  
Sbjct: 430 GEKDANDILRQDPSRIIKYIQESATIPDQNILM 462


>gi|150390368|ref|YP_001320417.1| hypothetical protein Amet_2606 [Alkaliphilus metalliredigens QYMF]
 gi|149950230|gb|ABR48758.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
          Length = 650

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 96/274 (35%), Gaps = 13/274 (4%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           I      ++   +   ++    T DE  EL+I L+     I  +       +   D+ ++
Sbjct: 274 IKTRKKEIEHELQSGIKDPDQETKDEIKELQIKLRELQPEINSEIRIIESLEKNIDKNRK 333

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
             +K  T++              D    +    + S  + ++  K +  E       ++ 
Sbjct: 334 TLEKLRTDYKEEAARELN----IDDSIKACPTCKRSFPEDEIESKITEMEENFKAHQVDR 389

Query: 495 PAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFL-----PEEIHQRLCERGFGE 548
              L+E+ Q ++ ++     EL++    L     + +         E +     +     
Sbjct: 390 LKKLREEGQSISKEVEGYQEELEQAKEKLDHLQNQAERLSVTIRKKESLLGTKEKTDINS 449

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-AQVTA 607
           LL   D Q     +       N +  R        L ++   +  Q +E EK++  +   
Sbjct: 450 LLA--DNQEYQELIKKINEIENEIKNRDHDTTIKDLRRKKEEMEIQLKEKEKELHQEEIN 507

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           +   EK  +L+     +  QI++IE +E + + F
Sbjct: 508 QETKEKIKVLMEEEKGLSQQINEIEKKEGIADQF 541


>gi|330465005|ref|YP_004402748.1| ATP-dependent chaperone ClpB [Verrucosispora maris AB-18-032]
 gi|328807976|gb|AEB42148.1| ATP-dependent chaperone ClpB [Verrucosispora maris AB-18-032]
          Length = 863

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 9/142 (6%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-----ELLKQLDRQVRDAG 561
            I   +    +L   + S  VE            + E            ++L+R  ++  
Sbjct: 392 AIDLVDESASRLRMEIDSRPVEVDEIERAVRRLEIEEMALAKEPDAASAERLERLRKELA 451

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE----KTAIL 617
                  A     +        L      L R   E E+       +  AE    +   L
Sbjct: 452 DKREQLTALSERWKLEKTHITKLSTAKEELERLGGEAERAERDGELERAAELRYGRIPAL 511

Query: 618 ISILHEVHIQIHQIESQEAMIE 639
            + L +   ++ ++++  AM++
Sbjct: 512 NNELKQAAEELARLQADGAMLK 533


>gi|242048726|ref|XP_002462109.1| hypothetical protein SORBIDRAFT_02g019360 [Sorghum bicolor]
 gi|241925486|gb|EER98630.1| hypothetical protein SORBIDRAFT_02g019360 [Sorghum bicolor]
          Length = 1039

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 68/188 (36%), Gaps = 20/188 (10%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR--------------- 509
            +  S + + + S +P+LRE   +   I +   ++E   E+ +++               
Sbjct: 187 NIADSIVEELEASIRPALRELDEIQEKIKNMEHIEEIAHEIENLKKKLAWAWVYDVDKEI 246

Query: 510 -YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF--GELLKQLDRQVRDAGLWSAT 566
                 L+KL   + +   +++      I + L +      E  K    + ++A      
Sbjct: 247 GGQEENLEKLKERIPAC--QERIDQNIAIIEELRKEFIVKKENFKSFLEKTQEARRMKEK 304

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            + +I +  +        + R R +  +     +Q+ +   + E +      + + +V  
Sbjct: 305 MDHDIREAVKLKMDLEKEHARGRQVLNKMNARVRQLEEQVHEFELQHMQQTQAEVSQVED 364

Query: 627 QIHQIESQ 634
            + +++ +
Sbjct: 365 SLRELQQE 372


>gi|238810190|dbj|BAH69980.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 741

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 73/220 (33%), Gaps = 23/220 (10%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +    +    R+  L        +       +   + + K     L+ ++ +  +   
Sbjct: 210 IEKDAALERRMQRVDVLEPSIEDTITILRGIKDRFENYHNVKIQDDALVAAARLSSRYIS 269

Query: 479 KPSLREAALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              L + A+         ++ E    +  +I +   EL+K    +    +E+     E+ 
Sbjct: 270 DRFLPDKAI--------DLVDEAAATIKTEINFQPEELEKAKQKMARLKMEKIAISSED- 320

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                ++     LK++D +++D        E  I  +   +       +    L  + ++
Sbjct: 321 -----KKKHAVRLKEIDAEIKDI-------EKTIKQLEDKWNFEKQRLEELSNLKSKLDD 368

Query: 598 IEKQIAQVTAKGEAEKTAI-LISILHEVHIQIHQIESQEA 636
              ++     + + EK +  L   +  +  QI + E + A
Sbjct: 369 ARHRLNIYQKETDYEKASKILYDEIPSIKKQIEETEKEIA 408


>gi|225451340|ref|XP_002274609.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|298204855|emb|CBI34162.3| unnamed protein product [Vitis vinifera]
          Length = 1320

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 46/108 (42%), Gaps = 2/108 (1%)

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            + L E    EL  +L    R+    S  +E  +  V +  ++   L  +     ++ +E
Sbjct: 203 KEELQEEIMNELYAELRELKREKDGLSDRSEEIVDMVVKAKREHDRLLGKASGDGKKIKE 262

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
              ++ +  ++ + E+ A +   + E+  +I + +   AM  G  ++S
Sbjct: 263 QIARLEESMSRLD-EEYAKIWERIGEIEDRILRRD-TMAMSIGIRELS 308


>gi|224368900|ref|YP_002603062.1| putative plasmin-sensitive surface protein (Pls family protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691617|gb|ACN14900.1| putative plasmin-sensitive surface protein (Pls family protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 567

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 62/211 (29%), Gaps = 4/211 (1%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            RL     K   E        KK    R     +++  +  L      K    R A    
Sbjct: 128 KRLADEAAKKAEEKRLADEAAKKAEEKRLADEAAKKAEEKRLADQAAKKAEEKRLADEAA 187

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                  +  E  ++  + R  +   +K      +D   +K        +   +     L
Sbjct: 188 KKAEEKRLADEAAKKAEEKRLADEAAKKAEEKRLADEAAKKAEEKRLADEAAKKAEEKRL 247

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
             +  ++  +  L     +              A  KR    + +K E ++   +   K 
Sbjct: 248 ADEAAKKAEEKRLADEAAKKAEEKRLADEAAKKAEEKRLADEAAKKAEEKRLADEAAKKA 307

Query: 610 EA----EKTAILISILHEVHIQIHQIESQEA 636
           E     ++ A     +  V  +I + E++EA
Sbjct: 308 EEKRLADEAAKRAIEIKRVIREIAEQEAKEA 338


>gi|197215658|gb|ACH53049.1| kinesin-like protein KIF3Abeta (predicted) [Otolemur garnettii]
          Length = 696

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/313 (8%), Positives = 88/313 (28%), Gaps = 16/313 (5%)

Query: 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373
           + + ++C +              L   +     +    +    +D             +K
Sbjct: 283 NSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEELKK 342

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433
            + E   +         E+   +        +   +   +            +   D+  
Sbjct: 343 KLEEGEEISGSDISGSEEDDDEDGEIGEDGEKRKKRRGSSSSSSSDSTCSVIEKPLDKF- 401

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493
              Q    + S       +     ++K    +L      + K   +   RE  LL     
Sbjct: 402 LPNQAGKKKVSPDKMVEMQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQE 461

Query: 494 HPAILQEQYQELADIRYDNNELQKLW----SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           H ++L    ++L+ +       +K+       L     ++K      +      +   +L
Sbjct: 462 HQSLL----EKLSALE------KKVIVGGVDLLAKAEEQEKLLEESNMELEERRKRAEQL 511

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            ++L+ + ++         +   + +   ++   ++        +  +++++  +   +G
Sbjct: 512 RRELEEKEQERLDIEEKYTSLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQEHQR-EIEG 570

Query: 610 EAEKTAILISILH 622
             E    L   L 
Sbjct: 571 LLENIRQLSRELR 583


>gi|154416409|ref|XP_001581227.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121915452|gb|EAY20241.1| hypothetical protein TVAG_021880 [Trichomonas vaginalis G3]
          Length = 1916

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/307 (10%), Positives = 95/307 (30%), Gaps = 30/307 (9%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           ED + ++    +   ++    +         R        +  E     + + +      
Sbjct: 55  EDLEHYVPQPREEKNDQHNNFAKIERQSELIRNIIENFEMSDAEFITHIMEIIDSEVEYS 114

Query: 417 DQKLRYYYSQ---AIRDRLQQ------LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
           D   + +       + + L             +T    + +  K++    +     +++ 
Sbjct: 115 DVSEQEFLLDAKVKLSELLNSHQLNGTDQSNLLTSLHNWFKMVKQDLIVLEDTDAKEQIF 174

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI----RYDNNELQKLWSFLF 523
            +S++   ++     +E      +I H  I+ +   ++ ++         E+ +L   + 
Sbjct: 175 DASVLIQIVNDSFENQEKQAEKAMIYHRNIVDQLSSDIRELTKTVNIQKEEIDQLKEAMM 234

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGLWSATTE-----ANIVDVRQG 577
                +K        + L +    E  +  L   + +A L +  +       N+ D  + 
Sbjct: 235 KSSRSKKKDSSRSNSRLLKKIAEQEYKINTLKESISNAKLGAIKSNSNTPTKNLSDNEEE 294

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS----------ILHEVHIQ 627
            +      +R  +L +  +E+  QI Q         +  L             +  +  Q
Sbjct: 295 EKIIDEKSERILVLEQNVKELNAQIKQA-QTDNQNLSQQLYKLRSNEITSESKIASLERQ 353

Query: 628 IHQIESQ 634
            + +++Q
Sbjct: 354 RNALDAQ 360


>gi|19698442|gb|AAL93149.1|AF485338_1 golgin-160 [Homo sapiens]
          Length = 1498

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 528 EQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           E      E    ++ E       +L ++L+    +        ++     +Q  Q  L L
Sbjct: 646 EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTL 705

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGE-----AEKTAILISILHEVHIQIHQIESQEAMIE 639
            +R + L   ++E    + Q+T   E      +    L +   E+  ++ +++ + A  E
Sbjct: 706 LQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTRYDELQARLGELQGEAASRE 765


>gi|73959615|ref|XP_867195.1| PREDICTED: similar to Interferon-induced guanylate-binding protein
           1 (GTP-binding protein 1) (Guanine nucleotide-binding
           protein 1) (HuGBP-1) isoform 2 [Canis familiaris]
          Length = 480

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/261 (8%), Positives = 75/261 (28%), Gaps = 10/261 (3%)

Query: 376 VESLPLVDMLWKRETENRSFNTPDER---AELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
            +++   D    +  +  +    +        E            + +   + + +  +L
Sbjct: 216 QKAIAHYDQQMNQMVKLPTETLQELLDLHRACEKEAIEFFMSNSFKDIDQLFQKDLAAKL 275

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           ++   ++  ++         +            + Q    K    +    +   L  T +
Sbjct: 276 EKKRDEFCKQNLQASTDRCSDLLKEIFGPLEDSVKQGVYSKPGGYRLFIQKTQELKKTYL 335

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
             P    +  + L     D+ E   +   +            E   +R+         K+
Sbjct: 336 QKPRKGIQAEEVL-QEYLDSKE--SMTDAILQTDQTLTEKEKEIEVERVKAESAQAATKR 392

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ---VTAKG 609
           L+             E +  +  +   + +    R +LL  Q+  +  ++ +   +  +G
Sbjct: 393 LEEMQMKNQQIMEQKERSYQEHVKQLTEKME-RDRIQLLEEQERTLALKLQEQARLLKEG 451

Query: 610 EAEKTAILISILHEVHIQIHQ 630
              ++  L + +  +   + +
Sbjct: 452 FQNESKRLHNEIQNLQQNMAR 472


>gi|74219492|dbj|BAE29519.1| unnamed protein product [Mus musculus]
          Length = 574

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|126352470|ref|NP_001075228.1| myosin-1 [Equus caballus]
 gi|75054115|sp|Q8MJV0|MYH1_HORSE RecName: Full=Myosin-1; AltName: Full=Myosin heavy chain 1; AltName:
            Full=Myosin heavy chain 2x; Short=MyHC-2x; AltName:
            Full=Myosin heavy chain, skeletal muscle, adult 1
 gi|21907900|dbj|BAC05680.1| myosin heavy chain 2x [Equus caballus]
          Length = 1938

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/272 (10%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHVRVVETMQTMLDAEIRSRNDAIRIKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1624 DLNEM-EIQLNHANRMAAEALRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAM 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 ISQLQGEMEDIVQEAHNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++  +E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRDLEGE 1828


>gi|16800473|ref|NP_470741.1| DNA repair and genetic recombination [Listeria innocua Clip11262]
 gi|16413878|emb|CAC96636.1| DNA repair and genetic recombination [Listeria innocua Clip11262]
 gi|313623865|gb|EFR93982.1| DNA repair protein RecN [Listeria innocua FSL J1-023]
          Length = 563

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 72/220 (32%), Gaps = 18/220 (8%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + +  RL  + +    E         +  R  +QK       + +               
Sbjct: 185 RELAQRLD-MLRFQQQEIENANLQAGEEDRLLEQKNVLANFEKLNENLQGAYTAIQGEPG 243

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            L          + E  +++      + + + +   + S +   +     +I Q L +  
Sbjct: 244 GL--------EFIGEAMRQMEAAASIHTDYKAVSEAISSSYYMLED-SMSQIRQSLDQLE 294

Query: 546 FG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-------LLSRQKEE 597
           F  E L Q++ ++ D           I D+ Q  ++     ++          L  +   
Sbjct: 295 FQPEELNQIESRLNDLNQLKRKYGKTIEDIIQYEKEISTEMEKLTDSESHVGHLETKMAT 354

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           ++ ++ +  +     +     ++  ++  +++Q+  ++A+
Sbjct: 355 LKTELTKQASTLTDIRKKAATTLEKQIKQELNQLYMEKAI 394


>gi|307273983|ref|ZP_07555193.1| hypothetical protein HMPREF9514_02725 [Enterococcus faecalis
           TX0855]
 gi|306509291|gb|EFM78351.1| hypothetical protein HMPREF9514_02725 [Enterococcus faecalis
           TX0855]
          Length = 516

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 43  CPFHDEKTPSFHCNDSK---GFYYCFS--CHVKGDHLSFLSALLGC-SFIESVQRLAAIA 96
           C FHD+  PS     SK     +YC S  C +  + +  +  +L   S +E+   L    
Sbjct: 129 CLFHDDHNPSASIFSSKTGHSIFYCHSSNCGISENFIGVVMLILKKDSRVETFNWLLE-- 186

Query: 97  GVPLPVVDPKIEKKEKIQTDLIRLIE 122
            + L     +  K+E     L   +E
Sbjct: 187 NLDLYPTHFRKLKEESK--VLFDTLE 210


>gi|297621843|ref|YP_003709980.1| putative chromosome segregation SMC protein [Waddlia chondrophila
           WSU 86-1044]
 gi|297377144|gb|ADI38974.1| putative chromosome segregation SMC protein [Waddlia chondrophila
           WSU 86-1044]
          Length = 1239

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 87/299 (29%), Gaps = 25/299 (8%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
              +     +        ++          + E       D    L   +K      K++
Sbjct: 238 VARWNHFKNRHDAFAEKEQAKGCELEAAALDLEKMEVERQDANIYLNHVIKELQVQ-KEE 296

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +    + I+ +  +  +  + E    G  W++      +K  +++L    +   K   
Sbjct: 297 MFKTRSQKEIQIKAWKSQEDRLEEMVCKGSEWQQELEEMIRKRKARQLEAEQIEARKKKV 356

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-----FSDFVEQKYFL 533
              L              +  E  ++L +I Y  NE++     +          E+    
Sbjct: 357 DKELSALE---------QVRNEFREQLREIEYAVNEIRD-RQHIAQQERVQCLQEENKIE 406

Query: 534 PEEIHQRLCERGFGELLKQLDR----QVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
            E     L      E +++L                  E    ++ +G      L +RF 
Sbjct: 407 SERKQTALRLEHHKEKIQRLQENQQMLKERLTHLHEQIEWKHQEIAEGADHIAELKERFS 466

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           L   Q EE    I Q        +   +     E+  + + +      ++GF K + R+
Sbjct: 467 LFESQIEETAALIKQTQH-----QLNHVSQERAEIKARQNALLRLREEMDGFSKGAKRI 520


>gi|297266033|ref|XP_002808087.1| PREDICTED: LOW QUALITY PROTEIN: girdin-like [Macaca mulatta]
          Length = 1960

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 101/334 (30%), Gaps = 30/334 (8%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
           +   +   K ++++   ++   +      +  +D         K   EK I       + 
Sbjct: 497 EKENQRLSKKVEILENEIVQEKQSLQNCQNLSKD-----LMKEKAQLEKTIETLRENSER 551

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
             K   +          +  +    +    +KD            ++  ++  + I E S
Sbjct: 552 QIKILEQENEHLNQTVSSLRQRSQISAEARVKD-----------IEKENKILHESIKETS 600

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                 +   R   ++    +       + +       +E  LL   I +  I  E+ + 
Sbjct: 601 SKLSKIEFEKRQIKKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEA 660

Query: 505 LA----DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           L     ++  +N +L+K      +   + +    E              ++ L +     
Sbjct: 661 LEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQLDEENLELRRNVESL-KCASMK 719

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE------EIEKQIAQVTAKGEAEKT 614
                     +   ++  ++ L L K     + + E      +IE Q  Q   +   +K 
Sbjct: 720 MAQLQLENKELESEKEQLKKGLELLKASFKKTERLEVSYQGLDIENQRLQKALENSNKKI 779

Query: 615 AILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             L S L ++ ++   ++     +E     S RL
Sbjct: 780 QQLESELQDLEMENQTLQKN---LEELKISSKRL 810



 Score = 38.3 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 59/159 (37%), Gaps = 26/159 (16%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--RLCERGFGELLKQLD-- 554
           +E  + +  + +D      + + +      Q+     +  +   + +     LLK +   
Sbjct: 139 EEFIERIQGLDFDTKA--AVAAHIQEVTHNQENVFDLQWMEVTDMSQEDIEPLLKNMALH 196

Query: 555 -RQVRDAGLWSATTEANIVDVRQGYQQA---------------LALYKRFRLLSRQKEEI 598
            +++ D     + T   + + R G                   +   +  + LS +  + 
Sbjct: 197 LKRLIDERDEHSETIIELSEERDGLHSLPHASSSAQSPCGSPGMKRTESRQHLSVELADA 256

Query: 599 EKQIAQVTAKGEAEKTAILI---SILHEVHIQIHQIESQ 634
           + +I ++  + E EKT  L+     L ++ I++ +++ +
Sbjct: 257 KAKIRRLRQELE-EKTEQLLDCKQELEQMEIELKRLQQE 294


>gi|297486816|ref|XP_002695852.1| PREDICTED: myosin, heavy chain 4, skeletal muscle [Bos taurus]
 gi|296476617|gb|DAA18732.1| myosin, heavy chain 4, skeletal muscle [Bos taurus]
          Length = 1938

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 83/277 (29%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  +L   +    +       +      ELE   K     ++D +      
Sbjct: 1351 EEEQEGKAELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEVV 1410

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1411 NAKCASLEKTKQRLQNEVEDLMLDVERSNAACAALDKKQRNFDKVLSEWKQKYEETQAEL 1470

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E   +L  ++ +N  LQ+  S L     E         
Sbjct: 1471 EASQKESRSLSTELFKVKNAYEESLDQLETLKRENKNLQQEISDLTEQIAEGGKH----- 1525

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +         +A + +     +       R   +  +  +
Sbjct: 1526 ------------IHELEKVKKQIEQEKGELQAALEEAEASLEHEEGKILR---IQLELNQ 1570

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1571 VKSEIDRKIAEKDEEIDQLKRNHLRVVESMQSTLDAE 1607


>gi|262273771|ref|ZP_06051584.1| poly(A) polymerase [Grimontia hollisae CIP 101886]
 gi|262222186|gb|EEY73498.1| poly(A) polymerase [Grimontia hollisae CIP 101886]
          Length = 451

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 37/343 (10%), Positives = 103/343 (30%), Gaps = 35/343 (10%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           D D        +   L     + G R     +  G D        G  A +K    +   
Sbjct: 66  DFDIATNATPEEVRKLFRNCRLVGRRFRLAHILFGRDVIEVATFRGHHAGDKSDKAAARS 125

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--SQAIRDRLQQLF--- 436
            D +     +N      ++    +  +     +I D  +R Y    + +++R  +L    
Sbjct: 126 NDGML--LRDNVYGTIDEDAERRDFTINALYYNIDDFSVRDYAGGVEDLKNRTIRLIGDP 183

Query: 437 ----QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL---- 488
               ++         R+  K     ++   +     + L++   + +       LL    
Sbjct: 184 ETRYREDPVRMLRAVRFAAKLDMRINEATAAPIPALAHLLRDIPAARLFEESLKLLQSGQ 243

Query: 489 ----LTLINHPAILQEQYQELADIRYDNNE---LQKLWSFLF----SDFVEQKYFLPEEI 537
                 L+    +    +  L +  +  +     +K+   +     +   + +   P  +
Sbjct: 244 GLATYRLLRDFNLFSPLFPLLDE-HFTEDHSSKCEKMLELVLKSTDARVAKDQRINPAFM 302

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +         +++  +   +   +        D+     +++A+ +RF  + R   +
Sbjct: 303 FAAMLWYPLETRAEEIAFESGLSYYDAFM--VAANDILDEQVKSIAIPRRFTAMIRDIWQ 360

Query: 598 IEKQI-----AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           ++ ++      +     E  K         E+  +I   + +E
Sbjct: 361 LQLRLSRRSGNRAYKLLEQNKFRAAF-DFLEMRGEIEGGQLKE 402


>gi|198457205|ref|XP_001360588.2| GA10161 [Drosophila pseudoobscura pseudoobscura]
 gi|198135898|gb|EAL25163.2| GA10161 [Drosophila pseudoobscura pseudoobscura]
          Length = 1181

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 45/366 (12%), Positives = 111/366 (30%), Gaps = 32/366 (8%)

Query: 276 LVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAI 335
           L +  +D             +        Y   ++      +++C D D     +     
Sbjct: 584 LNKNVVDYAQSKVGPENVQWALSLVQYDRYYEPVMKFCFGSVLICKDLDVAKKVS----- 638

Query: 336 DLVLCHLIPGNRVNFVLLSRGE-DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394
                   P      V L     DP   +          ++ E   + ++    +     
Sbjct: 639 ------YDPRINCRSVTLEGDLVDPHGTVSGGAAPKGANILEELHSIRELEKNYKNLEVE 692

Query: 395 FNTPDERAELEIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITE-----HSGYGR 448
               ++      +L +  N IK+   LR +     + RL Q   +               
Sbjct: 693 LQRVEQEMASIENLAHSYNKIKENLDLRQHEVTMCKSRLAQTTFQQNQAEIEEMKVKVQS 752

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA-D 507
             ++NA  R+++  SQ  ++    K   +K    RE   L +  N     +++ ++ + +
Sbjct: 753 LEQQNADSREKQKTSQVKIKDIEAKLADAKGYRERE---LKSATNEVKETKQRAEKSSVN 809

Query: 508 IRYDNNELQKLWSFL------FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
            +    E + L   +           EQ   + E + + + +     L ++      +  
Sbjct: 810 WKKREQEFETLKLEITELQKTIESSKEQHQEMVENLEKFIAD--LAALQEKSSSAESEVA 867

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--KTAILIS 619
                 +A    +    ++   L  +   + +Q +E+E Q+ +   +       T     
Sbjct: 868 ALEQGIKAQKDKLNAQNKEMRNLQVKREKMEKQNQELELQVKKKENEKSKSGTLTNEAKR 927

Query: 620 ILHEVH 625
            + ++ 
Sbjct: 928 RIQDLE 933


>gi|156094493|ref|XP_001613283.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148802157|gb|EDL43556.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 967

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 55/178 (30%), Gaps = 24/178 (13%)

Query: 481 SLREAALLLTLINH----PAILQEQYQELADIRYDNNELQKLWSF-----LFSDFVEQKY 531
             R   L+  ++ +      IL +      +  + N   + ++       +  +   +  
Sbjct: 622 QKRHRDLIAIILRYMHANLQILNDYIFNNINESFQNETARNVFEHVDVNSILENVNRELL 681

Query: 532 FLPEEIHQRLCE----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
              +   + L +    RG   +L++  +   +A      T     D  +  +    L K 
Sbjct: 682 TNRKLNQKYLQKIKKLRGEKNMLEEDLKNTIEAFQAQLDTVKRFKDENELLKTNEHLMKE 741

Query: 588 FRLLSRQKEE-----------IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +LL  + ++           +   I +     +  KT  +      +  ++   E +
Sbjct: 742 IKLLQDKYKDVDLFFKSKYKLLLNDIERYKKLLDERKTKAISQEAEALRAKLEAAEQE 799


>gi|148676696|gb|EDL08643.1| mCG21281 [Mus musculus]
          Length = 2078

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 59/150 (39%), Gaps = 11/150 (7%)

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           TL+     +Q++ +EL  I  D   ++K  + L S   EQ                  + 
Sbjct: 649 TLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNAS----------LQQA 698

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
              L     +        +A    ++Q  ++ L   +  + + + + E E++  +  A G
Sbjct: 699 QGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLR-DALG 757

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +A+ +       +E+  Q+ Q++   ++++
Sbjct: 758 KAQSSEEKQQENNELRTQLKQLQDDNSLLK 787


>gi|126324129|ref|XP_001369172.1| PREDICTED: similar to epidermal growth factor receptor pathway
           substrate 15-like 1, [Monodelphis domestica]
          Length = 902

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 32/76 (42%), Gaps = 9/76 (11%)

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK-----GEAEKTAILISIL----HE 623
           ++    Q+   L +    L +   E E+ I Q T++      + ++    +  L     +
Sbjct: 376 ELDDISQEIAQLQREKYSLEQDIREKEEAIRQKTSEVQELQNDLDRETSNLQELEAQKQD 435

Query: 624 VHIQIHQIESQEAMIE 639
              ++ +++ Q+A ++
Sbjct: 436 AQDRLDEMDQQKAKLK 451


>gi|150395374|ref|YP_001325841.1| peptidoglycan binding domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150026889|gb|ABR59006.1| Peptidoglycan-binding domain 1 protein [Sinorhizobium medicae
           WSM419]
          Length = 1226

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 71/226 (31%), Gaps = 31/226 (13%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R    +A R+RL    +                         S    +SS          
Sbjct: 67  RQRALKAARERLPLRERAIPVGPDRPAPPRPAAEARYQAPQTSPSTGRSSAAAEIAEALV 126

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            LR+            + ++    L+       E+  L S +       +    E    R
Sbjct: 127 GLRQ-----------ELKRDLDDGLSR------EMHTLRSEI-------RGIKAEAAQDR 162

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLSRQKEE-- 597
                  + +++L   +++ G  ++  EA+ + +     +  L    R   + R +    
Sbjct: 163 RFAEDVRDDIERLSAGIKELGRQASPAEADALRIEFDELRAMLEGLAREESMRRMENRWN 222

Query: 598 -IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA--MIEG 640
            +E ++       + E  A+    L E+  QI+ ++   A  ++EG
Sbjct: 223 GVEDRLNAFDQNRDDELVALAY-RLDEIKAQINSLDKGSAVEVLEG 267


>gi|326679865|ref|XP_003201400.1| PREDICTED: rab11 family-interacting protein 3 [Danio rerio]
 gi|82240330|sp|Q7T005|RFIP3_DANRE RecName: Full=Rab11 family-interacting protein 3; Short=FIP3-Rab11;
            Short=Rab11-FIP3
 gi|33468612|emb|CAE30388.1| novel protein similar to human KIAA0665 [Danio rerio]
          Length = 1183

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 112/357 (31%), Gaps = 40/357 (11%)

Query: 314  SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED-------PDSFIRCY 366
                    D D   L       D+     I         L+ G+D       P SF    
Sbjct: 777  YSECETFTDEDTTALVHPELHEDVETDSGIEN------TLTDGDDRNSPSSFPASFQNFL 830

Query: 367  GKTAFEKLIVESLPLVDM--LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
               A E         +          +    N   +++     + +    I D   R   
Sbjct: 831  QSEALEFFCTHCHKQISRLEDLSTRLQLLEMNRHLQQSNNLDVMGDLTQDILDLADRDIT 890

Query: 425  SQ--AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-SQRLMQSSLVKGKLSKKPS 481
             +   +  R+ +L +  +     + R  ++N     +     ++L +  L   +     +
Sbjct: 891  DKVLLLEKRVCELEKDSLESEEQHARLRQENLTLVHRANALEEQLKEQELRTEEDLLAQT 950

Query: 482  LREAALLLTLINHPAI-LQEQYQELADIRYDNNELQK----LWSFLFSDFVEQKYF--LP 534
             +    L  L     + ++     L  +  +N+EL+     L + +     E++      
Sbjct: 951  RKHRDALNKLQRERDLEIENLQARLHQLDEENSELRSCVPCLRANIERLEEEKRKLQDEA 1010

Query: 535  EEIHQRLCERGFGE--LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
            ++I QRL E       +  +L  +          T+  I D+R+  +             
Sbjct: 1011 DDITQRLNEESESRRKMSDKLSHERHTNQKEKECTQGLIEDLRKQLEHL----------- 1059

Query: 593  RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAMIEGFGKMSGRL 648
             Q  ++E +  +  +     +        +E+  +I ++ +   ++ E   +++G++
Sbjct: 1060 -QLFKLETEARRGRSSSNGLQEYNTHMRENELEQEIRRLKQDNRSLKEQNDELNGQI 1115


>gi|11276954|pir||A59234 slow myosin heavy chain 3 - quail
 gi|1289512|gb|AAC59911.1| slow myosin heavy chain 3 [Coturnix coturnix]
 gi|1289514|gb|AAC59912.1| slow myosin heavy chain 3 [Coturnix coturnix]
          Length = 1931

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 79/224 (35%), Gaps = 12/224 (5%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             +R     QK +    GY +  +       +     +   + + +     +  L E   L
Sbjct: 1627 ANRTAAEAQKQVKALQGYLKDTQLQLDDAVRANEDLKENIAIVERRNNLLQSELEE---L 1683

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              ++      ++  ++  ++   +  +Q L S   S   ++K    +    +L      E
Sbjct: 1684 RAMVEQSERARKLAEQ--ELTEASERVQLLHSQNTSLINQKKKMEAD--ISQLQ-TEVEE 1738

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA- 607
             +++       A            ++++    +  L +  + + +  ++++ ++ +    
Sbjct: 1739 AIQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDLQLRLDEAEQL 1798

Query: 608  --KGEAEKTAILISILHEVHIQIHQIESQEA-MIEGFGKMSGRL 648
              KG  ++   L + + E+  ++   +   A  I+G  K   R+
Sbjct: 1799 ALKGGKKQLQKLEARVRELENELEAEQKHNAESIKGLRKSERRV 1842


>gi|67903510|ref|XP_682011.1| hypothetical protein AN8742.2 [Aspergillus nidulans FGSC A4]
 gi|40741345|gb|EAA60535.1| hypothetical protein AN8742.2 [Aspergillus nidulans FGSC A4]
          Length = 1232

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 42/340 (12%), Positives = 107/340 (31%), Gaps = 31/340 (9%)

Query: 340 CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI-----VESLPLVDMLWKRETENRS 394
           C +  G     V L R +D   F++   + A  ++        S   V     +   N+S
Sbjct: 157 CAICLGLGWGPVHLGRAKDIGEFVKHGCREATIEIELARGPKHSRNPVVTRIIKREGNKS 216

Query: 395 FNTPDERAELEIHLKNCINHIKD----------QKLRYYYSQAIRD-----RLQQLFQKY 439
               + +    I + N    +                 + +Q          L +  ++ 
Sbjct: 217 SFMLNGKQSFAIQVDNLCQFLPQDKVSEFAALTPVELLHSTQRAAAGAEMVELHENLKRL 276

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLTLINHPAI 497
             E        + +          Q + ++   + +   + + R   L  +  L+ +  +
Sbjct: 277 RAEQKKLQSNNQSDKDLLANLENRQEMQRADFERVRQRAQIARRIELLQTVRPLVLYRHL 336

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           +++      +      EL+ L + L       +      +      +     L++ DR  
Sbjct: 337 VEQGKALKEERNVSQRELEVLEAQLKPVMRSSEQKKEYCMQLEAVVKHKQRALERADRMA 396

Query: 558 RDAGLWSATTEANIVDVRQGY----QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            D        E N+ ++        + A+   +    +++  + + +Q+     + +A+ 
Sbjct: 397 TDLNRKVEQYEQNMKELDAEIEAEKKSAVKSRQEGAKIAQTIKTLTRQLQDNPVEFDADW 456

Query: 614 TAILI----SILHEVHIQIHQI-ESQEAMIEGFGKMSGRL 648
               I      + E+  +  +I E +  + E F +   RL
Sbjct: 457 YNEQIRDKRREIREIENRAKEINERKRQLHEKFNETGDRL 496


>gi|319789740|ref|YP_004151373.1| SMC domain protein [Thermovibrio ammonificans HB-1]
 gi|317114242|gb|ADU96732.1| SMC domain protein [Thermovibrio ammonificans HB-1]
          Length = 894

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 93/277 (33%), Gaps = 19/277 (6%)

Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ--LF 436
            P        ET     ++     +LE  L+         K R    + ++ +L++  L 
Sbjct: 450 TPEKKERLLEETRQELNSSLTLIEQLERELRELRQEEPALKRR---LKELQRKLEEKRLL 506

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN--H 494
              I E     R   K     +         +    K +      ++E + L   +    
Sbjct: 507 AAQIKELEVETRELSKLKEETNGLKEELLKEEKQFKKLEEENLKEVQELSALKERLQALK 566

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
               +   +EL  ++ +    ++    L     E +  +  E+ +R         L++  
Sbjct: 567 KEASRFSEEELQKLKEELEATKREKEELLKRAGEIRDRVAPELKKREQVEARIRELEKSA 626

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI------EKQIAQVTAK 608
           R++       +  E    ++ +  Q+  +  ++ R LS++ + +       +++ +    
Sbjct: 627 RELEKIKGALSEKERIREELNRLEQELKSFKEKERELSQELKALNPVRDKLRKLQKEEED 686

Query: 609 GEA------EKTAILISILHEVHIQIHQIESQEAMIE 639
           GE       E+ + L   + E+  QI  I  +   +E
Sbjct: 687 GERRIRSLIEEASKLKGEIEELRRQIGAIREELKRLE 723



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 67/203 (33%), Gaps = 16/203 (7%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             L  L ++         R+ ++  +   ++  + +  +  L+K     +  +       
Sbjct: 553 QELSALKERLQALKKEASRFSEEELQKLKEELEATKREKEELLKRAGEIRDRVA------ 606

Query: 490 TLINHPAI--LQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLC-ER 544
                P +   ++    + ++     EL+K+   L       E+   L +E+      ER
Sbjct: 607 -----PELKKREQVEARIRELEKSARELEKIKGALSEKERIREELNRLEQELKSFKEKER 661

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              + LK L+             E     +R   ++A  L      L RQ   I +++ +
Sbjct: 662 ELSQELKALNPVRDKLRKLQKEEEDGERRIRSLIEEASKLKGEIEELRRQIGAIREELKR 721

Query: 605 VTAKGEAEKTAILISILHEVHIQ 627
           +  + +          L E+  +
Sbjct: 722 LEVEKQCASKLKDAVSLLEIQER 744


>gi|284040353|ref|YP_003390283.1| chromosome segregation ATPase [Spirosoma linguale DSM 74]
 gi|283819646|gb|ADB41484.1| Chromosome segregation ATPase-like protein [Spirosoma linguale DSM
           74]
          Length = 1100

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 92/269 (34%), Gaps = 16/269 (5%)

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
            +    + +         +      +  + + +++   +     I +   +    Q I+ 
Sbjct: 472 VQVWDNDGVNGAKSSRSNQLNFVIPSNAEIQKQVDKSAEKTEQQIDNALSKT---QEIKK 528

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            LQ +  +  T+ S   +  K+      ++    + +Q    + + +     R       
Sbjct: 529 ELQTMEDRMRTKKSSDFQDKKQLQEILQKREELMKEVQKLQEQMQKTNDTQQR------- 581

Query: 491 LINHPAILQEQYQELADI--RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                  LQ++ ++L  +     + E ++L+  L      ++     ++  RL  +    
Sbjct: 582 FAEKNQALQDKMEQLQKLFKDLLDPESKQLYEQLKQLLERKQDEKASDMLDRLTRKE-KN 640

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQVTA 607
           L + LDR ++         + N V      +QA  L K+      + +   E+Q  Q  +
Sbjct: 641 LERDLDRALKLFKQMQLEQKVNNV-AENLEKQAEQLEKQAEESAKKNETTQEQQKQQEKS 699

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEA 636
           + + + T   +  L E   +   +   EA
Sbjct: 700 QEDFKNTKEQLKELQE-QAEKEDLNKPEA 727


>gi|299821508|ref|ZP_07053396.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Listeria grayi DSM 20601]
 gi|299817173|gb|EFI84409.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Listeria grayi DSM 20601]
          Length = 650

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 8/128 (6%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
            ++ S +     +       +    L +    E + +LD +       SA    +    +
Sbjct: 509 NRIASKVLEMAPDGATTYLGDYDYYLQKLAEAEEIARLDAEEAAKQNPSAPLPTSSSPAK 568

Query: 576 QGYQQALALYKRFRLLSRQKEEIEK-------QIAQVTAKGEAEKTAILISILHEVHIQI 628
             YQQ     K+ R L R+  EIEK       QI+++ +             ++EV+ Q+
Sbjct: 569 NSYQQDKEQQKQRRKLERRLTEIEKELEKTEAQISELESLLTEPTVYQDHEKVYEVNTQL 628

Query: 629 HQIESQEA 636
            Q + Q A
Sbjct: 629 EQ-QKQAA 635


>gi|289207782|ref|YP_003459848.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           K90mix]
 gi|288943413|gb|ADC71112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           K90mix]
          Length = 633

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 55/173 (31%), Gaps = 19/173 (10%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDN----------NELQKLWSFLFSDFVEQKYFL 533
           E   +  L   P  L++      D    +           EL+++      D  E+    
Sbjct: 226 ERVRIAYLQLDPEALEDAVDVSEDDVRQHYEVNRSRYEEPELREVRQIRIQDTGEEGEAK 285

Query: 534 PEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             E+  RL +   F EL +        A    +  E    D+ +   + +       L+S
Sbjct: 286 INELRDRLDDGEDFAELAEAYSEDSLSADRGGSLGEIARGDLDRTL-ETIIFTLPEGLIS 344

Query: 593 RQKEE------IE-KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           R          +E   I +   +   +    +   L +   +  QI++ + ++
Sbjct: 345 RPVRTDRGWFILEVTSIQEARPQPFEDVRDEVERDLRDRSAEQMQIDALDDLM 397


>gi|166706887|ref|NP_110413.2| syncoilin isoform 1 [Homo sapiens]
          Length = 482

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 44/117 (37%), Gaps = 6/117 (5%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QA 581
            +   +      E++ Q+L           L    R +  +      +  D+ + Y+ Q 
Sbjct: 288 LAQLRDAYQKQKEQLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQF 347

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           L L +R    ++  +  + +I ++      E    L +   ++ +Q   +E Q A++
Sbjct: 348 LRLLERKEAGTKALQRTQAEIQEM-----KEALRPLQAEARQLRLQNRNLEDQIALV 399


>gi|148679033|gb|EDL10980.1| hook homolog 2 (Drosophila), isoform CRA_a [Mus musculus]
          Length = 734

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 84/272 (30%), Gaps = 32/272 (11%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  DE  +     +     +   + R    Q +R +++QL ++         +  ++  R
Sbjct: 314 DEMDELRQSSERARQLETTLNSCRRRLGELQELRRQVRQLEERNAGHAERTRQLEEELRR 373

Query: 456 HRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLT--LINHPAILQEQYQEL----ADI 508
               +     +  Q   ++G+  ++    E  L     L     ++ ++ + L      +
Sbjct: 374 AGSLRAQLEAQRRQVQELQGQWQEEAMKAEKWLFECRNLEEKCDLVTKEKERLLTERDSL 433

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLP-----EEIHQRLCERGFGELLKQLDRQVRDAGLW 563
           R  N EL+                 P     E +   +      E L +L  + +     
Sbjct: 434 REANEELRCAQLQPRGLAQADLSLDPTPSGLENLAAEILPAELRETLVRLQLENKRLCQQ 493

Query: 564 SATTEANIVDVRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKGE-- 610
            A       ++++  ++A                +   L  Q EE++K + +   K E  
Sbjct: 494 EAADRERQEELQRHLEEANRARHGLEAQQRLNQQQLSELRAQVEELQKALQEQGGKTEDP 553

Query: 611 -------AEKTAILISILHEVHIQIHQIESQE 635
                   +    L     E+  +   IE  E
Sbjct: 554 TLLKRKLEDHLQKLHEADLELQRKREYIEELE 585



 Score = 37.2 bits (84), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA-KGE 610
           +L+    D  L     E  + +++Q  Q   +L +  + L  + +E+ +   +    +  
Sbjct: 273 RLESSREDDRLRCLELEREVAELQQRNQALTSLSQEAQALKDEMDELRQSSERARQLETT 332

Query: 611 AEKTAILISILHEVHIQIHQIESQEA 636
                  +  L E+  Q+ Q+E + A
Sbjct: 333 LNSCRRRLGELQELRRQVRQLEERNA 358


>gi|126663793|ref|ZP_01734788.1| putative heat shock ClpB protein [Flavobacteria bacterium BAL38]
 gi|126624057|gb|EAZ94750.1| putative heat shock ClpB protein [Flavobacteria bacterium BAL38]
          Length = 867

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 73/212 (34%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++K          +  +++    K +   K  +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQKVLVDEPDTESAISILRGIKEKYETHHKVRIKDDAIIAAVELSQ 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             +  ++     I   +    KL   + S   E      + +   +          +   
Sbjct: 377 RYITNRFLPDKAIDLMDEAASKLRMEINSKPEELDVLDRKIMQLEIEMEAIKRENDETKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
           +     L +   E N  ++   ++    +    + + ++ E+ + +  Q    G+  K A
Sbjct: 437 KGLGMDLANLKEERN--EIFTKWKSEKDVVDNIQNVKQEIEDFKTEAEQAERNGDYGKVA 494

Query: 616 IL--------ISILHEVHIQIHQIESQEAMIE 639
            +           L  + IQ+ + +S  ++I+
Sbjct: 495 EIRYGKIKEAQERLDVLQIQLAENQSGTSLIK 526


>gi|119911910|ref|XP_615306.3| PREDICTED: myosin, heavy chain 4, skeletal muscle [Bos taurus]
          Length = 1939

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 83/277 (29%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  +L   +    +       +      ELE   K     ++D +      
Sbjct: 1352 EEEQEGKAELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEVV 1411

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1412 NAKCASLEKTKQRLQNEVEDLMLDVERSNAACAALDKKQRNFDKVLSEWKQKYEETQAEL 1471

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E   +L  ++ +N  LQ+  S L     E         
Sbjct: 1472 EASQKESRSLSTELFKVKNAYEESLDQLETLKRENKNLQQEISDLTEQIAEGGKH----- 1526

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +         +A + +     +       R   +  +  +
Sbjct: 1527 ------------IHELEKVKKQIEQEKGELQAALEEAEASLEHEEGKILR---IQLELNQ 1571

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1572 VKSEIDRKIAEKDEEIDQLKRNHLRVVESMQSTLDAE 1608


>gi|78777001|ref|YP_393316.1| DnaB-like helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78497541|gb|ABB44081.1| DnaB-like protein helicase-like protein [Sulfurimonas denitrificans
           DSM 1251]
          Length = 557

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/159 (10%), Positives = 49/159 (30%), Gaps = 19/159 (11%)

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI------ 537
           E ++L +++  P  LQ+    L    +     Q ++  +     +      E +      
Sbjct: 12  EKSILSSILFEPQKLQDISNILNVEDFYLQAHQLIYDSMLKLNKQDLPIDEEFLKKKFPK 71

Query: 538 ------HQRLCERGFGELLK---QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                    L       +L    +L     +  +    ++    D+     + + L +R 
Sbjct: 72  IDDGVMLDILAANPISNILAYAKELKTDAINRQITLVGSKVAHGDL-AAINELIGLQERL 130

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             +    +++++      +  +  K  I    +  V  +
Sbjct: 131 NTVDG-IKQLKRDDKTFNSIFD--KFDIDFEEIENVKFE 166


>gi|66815545|ref|XP_641789.1| RhoGAP domain-containing protein [Dictyostelium discoideum AX4]
 gi|74856291|sp|Q54WY8|GACN_DICDI RecName: Full=Rho GTPase-activating protein gacN; AltName:
           Full=GTPase activating factor for raC protein N
 gi|60469819|gb|EAL67806.1| RhoGAP domain-containing protein [Dictyostelium discoideum AX4]
          Length = 611

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 68/232 (29%), Gaps = 11/232 (4%)

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
             + + D        + + +    L++   T               +          + +
Sbjct: 194 LESMMTDSNSISEVVRVLIEEFHVLYEIKQTLLYQVSAIDLGIREDKRSTSEQLEDAKVT 253

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-- 528
           + + K       RE ++L T       ++++ QEL DI     E +     L ++F E  
Sbjct: 254 IEQLKKHLNEEARERSILETYCTS---MEQKLQELEDINKSLTEEKDSLGELLNEFKETN 310

Query: 529 -QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN--IVDVRQGYQQALALY 585
             +      +   + +    +   +L+R   +        +     ++++    +   L 
Sbjct: 311 KNQANDINSLKNDIKDVTEKQTKTELERDELNKVKVKLEKDIETTRIELKSTNDECQKLK 370

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIESQ 634
                L    +   K+  Q           +       + +   +  Q++ +
Sbjct: 371 VNNNKLGEDIKNQMKEFEQTRKSLLENHKLEFEKHQLEIQQFRQENEQLKKE 422


>gi|322488776|emb|CBZ24023.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 2840

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 13/129 (10%)

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L     E +     E  ++       +  ++   Q R      A  EA     R+  +QA
Sbjct: 588 LEQARREAEEQARREALEQARREAEEQACREALEQARREAKEQARREAEEQARREALEQA 647

Query: 582 LAL---YKRFRLLSRQKEEIEKQIAQV-------TAKGEAEKTAILISILHEVHIQIHQI 631
                   R   L + + E E+Q  +         AK +A + A   +    +     + 
Sbjct: 648 RREAEEQARREALEQARREAEEQARREALEQARREAKEQARREAEEQARREALEQARREA 707

Query: 632 ESQ---EAM 637
           E Q   EA+
Sbjct: 708 EEQARREAL 716


>gi|289422620|ref|ZP_06424462.1| SMC domain protein [Peptostreptococcus anaerobius 653-L]
 gi|289156971|gb|EFD05594.1| SMC domain protein [Peptostreptococcus anaerobius 653-L]
          Length = 907

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/259 (11%), Positives = 91/259 (35%), Gaps = 14/259 (5%)

Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI-KDQKLRYYYSQAIRDRLQQLFQ 437
                +    +         +   + +    +  + I K+  L   YS   +++L+   +
Sbjct: 463 KSPSQIRIDHDMSQEESYYQENLEKKKKQCDDLWHLISKNTGLLESYSSR-KEKLESTLE 521

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
               +         +   +  +     +  ++ +     +    ++E + +  +I+   +
Sbjct: 522 NLSKDLMDLDIEGYQKEIYELEVYIKDQ--RNIIEGKNRAYMDLMKEKSQVDKIISDYKL 579

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
             E  + + DI +   + Q  +  L  +  +Q   L   ++ R+ + G   L+   D+  
Sbjct: 580 --ESTRIVTDINFKYQQNQD-YDKLIVEKTDQMDVLYSGLNLRIGKLGLEVLIGDPDQ-- 634

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
               +     E   +D  +  +  +  +K +   L  +  E+  +I +   K + E    
Sbjct: 635 --VDITKLKREYTDLDKIRAIKLEIEDHKTKKTQLDLKIGELRIKIGE--NKLDKEDLIE 690

Query: 617 LISILHEVHIQIHQIESQE 635
             +  ++V  ++  ++ +E
Sbjct: 691 KEAEYNKVQDELETLKEKE 709


>gi|281352969|gb|EFB28553.1| hypothetical protein PANDA_001927 [Ailuropoda melanoleuca]
          Length = 1853

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 72/231 (31%), Gaps = 20/231 (8%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    +     L+Q   +   +     +  K+  +  + K  +       +   +   K 
Sbjct: 809  RLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENNVKIGNLEKENKT 868

Query: 481  SLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +E ++   + I    + +E  + +     D   L  L   L S          E++  
Sbjct: 869  LFKEISIYKESCIRLKELEKENKELVKRATIDIKTLVTLREDLVS----------EKLKT 918

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEI 598
            +       +L  +L++   +        ++     +    +  +  K+   +  +    +
Sbjct: 919  QQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDRYKLLESKLESTLKKSLEIKEEKIAAL 978

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIEGFGKMSG 646
            E ++ + T          L   L  V      + Q + +E M++     SG
Sbjct: 979  EARLEESTNYN-----QQLRQELKTVKKNYEALKQRQDEERMVQSSPPTSG 1024



 Score = 37.6 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 17/159 (10%), Positives = 56/159 (35%), Gaps = 26/159 (16%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--RLCERGFGELLKQLDRQ 556
           +E  + +  + +D      + + +      Q+     +  +   + +     LLK +   
Sbjct: 139 EEFIERIQGLDFDTKA--AVAAHIQEITHNQENVFDLQWMEVTDMSQEEIEPLLKNMALH 196

Query: 557 VRDAGLWSATTEANIVDVRQGYQQA------------------LALYKRFRLLSRQKEEI 598
           ++            I+++ +                       +   +  + LS +  + 
Sbjct: 197 LKRLIDERDEHSETIIELSEERDGLHFLPHASSSAQSPCGSPGMKRTESRQHLSVELADA 256

Query: 599 EKQIAQVTAKGEAEKTAILI---SILHEVHIQIHQIESQ 634
           + +I ++  + E EKT  L+     L ++ I++ +++ +
Sbjct: 257 KAKIRRLRQELE-EKTEQLLDCKQELEQMEIELKRLQQE 294


>gi|288942650|ref|YP_003444890.1| hypothetical protein Alvin_2956 [Allochromatium vinosum DSM 180]
 gi|288898022|gb|ADC63858.1| conserved hypothetical protein [Allochromatium vinosum DSM 180]
          Length = 728

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/267 (9%), Positives = 73/267 (27%), Gaps = 10/267 (3%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
                      E++  +      E E +          ++  L    N +K+ + R    
Sbjct: 86  EKIEQTLASQQEAMADLYHRLM-EGEAKHEEQERTLRRIQDQLTETENQLKEFEERRQQI 144

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + + + L +  ++  +                 ++       + +L + +          
Sbjct: 145 EQLLEILSKRQREQESTLQEKNFEIHAAKTALAEQREKLTEGEETLKRQRQEADDLKVRR 204

Query: 486 ALL---LTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-EIHQ 539
             L   + ++       E    ++   +      L++ +        +++    E  +  
Sbjct: 205 DALNAEVVMLEQRKAQTEAALVEQSERLDKGKESLRRQFQEAEELHRKREVLNNEIALLD 264

Query: 540 R---LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +   L E    E  ++L              +           + + L +R   L R K 
Sbjct: 265 QRKVLAESALAEQKEKLSEGEEALKRQRQEADDLRAKRDALNAEVVMLEQRKAELERMKA 324

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHE 623
            ++  I Q   + + E    L  +   
Sbjct: 325 TLQGYIEQAHKERDEEVANALADLKRA 351



 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 79/238 (33%), Gaps = 25/238 (10%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           Q + +R +++ +          +  +++    + +    +L+        L  K    E 
Sbjct: 28  QLLIERRREMAEIQENLTDLAQQLVRRDMAVAEAEEARIKLVSMQESLTLLEPKRIELEK 87

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            +  TL +    + + Y  L +    + E ++    +     E +  L E   +R     
Sbjct: 88  -IEQTLASQQEAMADLYHRLMEGEAKHEEQERTLRRIQDQLTETENQLKEFEERRQQIEQ 146

Query: 546 FGELLKQLDRQVRDAGLWSATT----EANIVDVRQGYQQALALYKRFR------------ 589
             E+L +  R+               +  + + R+   +     KR R            
Sbjct: 147 LLEILSKRQREQESTLQEKNFEIHAAKTALAEQREKLTEGEETLKRQRQEADDLKVRRDA 206

Query: 590 ------LLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEAMIE 639
                 +L ++K + E  + + + + +   E          E+H +   + ++ A+++
Sbjct: 207 LNAEVVMLEQRKAQTEAALVEQSERLDKGKESLRRQFQEAEELHRKREVLNNEIALLD 264


>gi|256074955|ref|XP_002573787.1| Rootletin (Ciliary rootlet coiled-coil protein) [Schistosoma
           mansoni]
 gi|238658975|emb|CAZ30019.1| Rootletin (Ciliary rootlet coiled-coil protein), putative
           [Schistosoma mansoni]
          Length = 947

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/246 (8%), Positives = 74/246 (30%), Gaps = 15/246 (6%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
                ++D +L+    Q   +++Q      +             +        ++     
Sbjct: 6   KLERDLRDNRLKEAQMQDEVEQVQASVSDVLQRREQLQLTIADYSATLRGGKSARERASE 65

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            L + +  ++ +  E  L      +    ++   ELA+    + E ++            
Sbjct: 66  ELSRVR--EQINQVERRLAELRPQYKK-AKQFEDELAN-ALSDAEHRR-KELFAKQGRVN 120

Query: 530 KYFLPEEIHQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
           ++    +  + + ++              + +L  +++         + ++    +    
Sbjct: 121 QFQSRSQRDEWIKDQMKSLSKAIKDKENTINKLTEEIKRDDERREKLQQDLEVAEENMTC 180

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
                +      R+    + +I         E+T  +   L+ +  ++ + E     I G
Sbjct: 181 VRKELETVSEEQRRLRREKDEIQTDRQTVYREET-RIAHELNNLRDELARTEHNLRSITG 239

Query: 641 FGKMSG 646
            G ++G
Sbjct: 240 KGILNG 245


>gi|212695559|ref|ZP_03303687.1| hypothetical protein ANHYDRO_00076 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677437|gb|EEB37044.1| hypothetical protein ANHYDRO_00076 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 784

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQA----LALYKRFRLLSRQKEEIEKQIAQV 605
           +K L+ Q++D        ++ I ++++  +        L +    L  +  + + +IAQ+
Sbjct: 305 IKDLENQIKDLNDKKQEDQSKIDELKEKLESCKDNGEKLKQEKAKLEEEIRDKDNKIAQL 364

Query: 606 TAK----GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             +      +     LI+ + ++  ++ +++ + A ++
Sbjct: 365 NKEIEDLKNSNNNDELIAEITQLKDELKRLQYENAKLK 402


>gi|196010708|ref|XP_002115218.1| hypothetical protein TRIADDRAFT_59176 [Trichoplax adhaerens]
 gi|190581989|gb|EDV22063.1| hypothetical protein TRIADDRAFT_59176 [Trichoplax adhaerens]
          Length = 484

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 72/186 (38%), Gaps = 21/186 (11%)

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
             ++K   Q L   +  + K  +   + EA L        A ++++ +E++         
Sbjct: 235 PNEEKIKEQHLAHVTQSERKAGEVIKMLEAEL-------NAAVEDRDEEVSK-------- 279

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
               + +            E+  + +  R   E +KQ     +++    +  + +I ++R
Sbjct: 280 ---RNEIIRRLKND-LHSIEKYSEEMNRRTLSEAVKQEAADTKNSEGRRSKMQHDIANIR 335

Query: 576 QGYQQALALYKRFRL-LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           Q        ++   L L ++K ++E ++     K + + +    + + E+     + ++Q
Sbjct: 336 QTLATITLTHRESELNLRKKKYKLETEVENWIQKYDQDMSER-QNEIEEIQEVYTKEKAQ 394

Query: 635 EAMIEG 640
            A IEG
Sbjct: 395 LAAIEG 400


>gi|145539446|ref|XP_001455413.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423221|emb|CAK88016.1| unnamed protein product [Paramecium tetraurelia]
          Length = 555

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 73/234 (31%), Gaps = 27/234 (11%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            D+  R  YS+ +       F     +         + +R R  +   +R +   L K +
Sbjct: 208 SDEDGRISYSELLEAL---TFVPDFFQQERQIANELRRSRERIIQIEREREVLEDLKKSR 264

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +   R    L  +       +E+ ++L D+R     L  L                 
Sbjct: 265 ERVEDLRRSRERLEYM-QDLKRSRERIEQLDDLRRSRERLDDLRRS-------------- 309

Query: 536 EIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
              +RL + +   E L QL+   R         E      RQ     L   +       +
Sbjct: 310 --RERLEDLKKSRERLSQLEELKRSRQRMEELEELKKSRERQAQIDELKKSR------ER 361

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            E++ K   ++    +  K    I  L +   +I +++ Q   +E       RL
Sbjct: 362 LEDLRKSRERLEQLEQERKNQEKIEELRKSRSRIEELQKQRRKVEELRTSQERL 415



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 88/243 (36%), Gaps = 19/243 (7%)

Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
               +  +  ++  + R  Y Q ++       ++ I +     R  ++    R  +   +
Sbjct: 260 LKKSRERVEDLRRSRERLEYMQDLKR-----SRERIEQLDDLRRSRERLDDLRRSRERLE 314

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
            L +S     +L +    R+       +      +E+  ++ +++     L+ L      
Sbjct: 315 DLKKSRERLSQLEELKRSRQRM---EELEELKKSRERQAQIDELKKSRERLEDLRKSRER 371

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD-AGLWSATTEANIVDVRQGYQQALA 583
               ++    +E  + L +      +++L +Q R    L ++      +  ++   +   
Sbjct: 372 LEQLEQERKNQEKIEELRKS--RSRIEELQKQRRKVEELRTSQERLEQLKKQKEEIELRR 429

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS-------ILHEVHIQIHQIESQEA 636
             +R   L R+  E  +QI  +    E ++    +         L +  ++I Q+E++  
Sbjct: 430 SQERLEDL-RKSRERLEQIEALRQSREQQRALEELRQSRERVEQLRKSQLRIEQLENERK 488

Query: 637 MIE 639
           ++E
Sbjct: 489 VLE 491


>gi|114600698|ref|XP_001151240.1| PREDICTED: ankycorbin isoform 1 [Pan troglodytes]
          Length = 909

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 101/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 523 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 580

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 581 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLIQLTNVSRAKAEDALSEMKSQYSKVLN 640

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 641 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 699

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 700 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 759

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 760 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 797


>gi|27227578|emb|CAD59406.1| SMC4 protein [Anopheles gambiae]
          Length = 1376

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 88/275 (32%), Gaps = 18/275 (6%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           +++S    +                      + +   ++ + +++   +    + +R  +
Sbjct: 225 MMKSKAQTENDCGLLEYLEDIVGTTRYKVPLLKINERVDALNEERTEKHNRCKLAEREMK 284

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA-ALLLTLIN 493
             +K  TE   Y +      R R+Q+      +Q  L + K        E       L  
Sbjct: 285 DLEKPKTEAVEYLKQENTLTRTRNQQ------IQKYLCEQKRKIGEFEVERDQAAGILAK 338

Query: 494 HPAILQEQY-QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI--------HQRLCER 544
           H         + +   +    E+++ +  L S    ++  L   +        + R    
Sbjct: 339 HDETYDALKAERVEKEKLVKEEIKQ-YDELVSAKESKESTLKNSLDKFAKVQANMRATNE 397

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              + L+Q+  + +         + N  ++ +   +  +L ++   +  +       +  
Sbjct: 398 RRKKTLEQIAAEEKRLLELQDVPKKNKKEIEESEAKIESLTRQKTEVEAKLTANLATLKD 457

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              K   E+   L + L E+   + + +S  ++ E
Sbjct: 458 -ETKVLLEEKEKLQTELIELKRAVDESKSALSIAE 491


>gi|325274413|ref|ZP_08140500.1| chromosome segregation protein SMC [Pseudomonas sp. TJI-51]
 gi|324100448|gb|EGB98207.1| chromosome segregation protein SMC [Pseudomonas sp. TJI-51]
          Length = 1162

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 63/233 (27%), Gaps = 34/233 (14%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            R  Q   +   E        +  A   + +    +   + L + +  +   L EA LLL
Sbjct: 695 RRRSQEENRLHGELKASLSASRARAEQVELRRRRLQEELAELEEQRALEHEQLGEARLLL 754

Query: 490 T---------------LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
                           L+     L+E    +      + +     +        Q     
Sbjct: 755 QEAVELMAQDTEQREQLMARRDALRESLDRVRQEARQHKDHAHQLAVRLGSLRAQHDSTR 814

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY--------- 585
           + + +        +   +L  +     L     EA   ++R   +  L L          
Sbjct: 815 QALER------LEQQAARLTERQEQLSLNLEEGEAPQEELRLKLEALLELRMSVDEEMRL 868

Query: 586 --KRFRLLSRQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIESQ 634
                    R+  E EK+ +Q   +      +   L      + ++   ++ Q
Sbjct: 869 ARLHMDEADRELREAEKRRSQAEQQALLLRGQLEQLRLECQGLDVRRKTLQEQ 921


>gi|298243866|ref|ZP_06967673.1| ATP-dependent protease La [Ktedonobacter racemifer DSM 44963]
 gi|297556920|gb|EFH90784.1| ATP-dependent protease La [Ktedonobacter racemifer DSM 44963]
          Length = 869

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 71/233 (30%), Gaps = 8/233 (3%)

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           +            D+  R      +    +           G  R              +
Sbjct: 71  VAQKSAEIEQAGPDEIFRMGTVSRVGRMFRMPDGTLQIAVQGLERVEIGEFTQEKPYLMA 130

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
               +  + +     +    +  ++       A++Q   + +A    +  E +++  ++ 
Sbjct: 131 HVTARPDVQESD--NETEALKRNVIGYFQRLVALVQNMPEGVAAATLNLEEARQVV-YVI 187

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           + FV+ +  L +++ +    R     L        +        + +  +     Q+   
Sbjct: 188 ATFVQMELELRQKLLELDSVREKLVQLSSFLAHELEILELGKKIQTSAQEEMGKMQREYL 247

Query: 584 LYKRFRLLSRQK---EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           L ++ + + R+     E +  + ++  K +  +       L E + ++ ++E 
Sbjct: 248 LREQLKAIQRELGEESEEQATVNELRRKIDEAQMPE--EALKEANRELSRLEK 298


>gi|295401643|ref|ZP_06811610.1| ATP-dependent chaperone ClpB [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294976263|gb|EFG51874.1| ATP-dependent chaperone ClpB [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 864

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/210 (10%), Positives = 73/210 (34%), Gaps = 16/210 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++YI +     R +++          +  +++    + ++     + + AL+       
Sbjct: 320 YRQYIEKDPALERRFQQVLVEEPSVEDTISILRGLRERFEVHHGVKIHDRALVAAATLAD 379

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF--------G 547
             + +++     I   +     + + + S   E    +   +   + E            
Sbjct: 380 RYISDRFLPDKAIDLVDEACATIRTEMDSMPSELDEVMRRVMQLEIEEAALRKETDEASK 439

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E L  L +++ D    + + +      ++  Q+   + +      R+ EE E +      
Sbjct: 440 ERLAALTKELADLREKADSMKMQWQQEKEAIQRVRDVREALEKAKRELEEAENE------ 493

Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEA 636
             +  + A L    + ++  Q+ Q+E + +
Sbjct: 494 -YDLNRAAELRHGRIPQLEKQLKQLEQEMS 522


>gi|255732599|ref|XP_002551223.1| hypothetical protein CTRG_05521 [Candida tropicalis MYA-3404]
 gi|240131509|gb|EER31069.1| hypothetical protein CTRG_05521 [Candida tropicalis MYA-3404]
          Length = 564

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 56/157 (35%), Gaps = 11/157 (7%)

Query: 487 LLLTLINHPAILQEQYQELADIRYDN-----NELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           +   L N P+++     +   +  DN       L++ +  L ++         + +   L
Sbjct: 29  ITALLANFPSLISNSSGQHTSVEDDNVRYVYQPLEEFYIVLITNKTSNILQDIDTL--HL 86

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                  LL+ +D +      +    +A    +  GY++ L L +    L  + +  E++
Sbjct: 87  FASTISNLLRNIDEREIFESSFEII-DAFDEIINLGYKENLTLTQVQTFL--EMDSHEEK 143

Query: 602 IAQV-TAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           I ++     E E          E+  +    ++ E +
Sbjct: 144 IQEIIERNKELEAAEERKRRAKEIQRKELARKNMEQL 180


>gi|194214931|ref|XP_001488521.2| PREDICTED: RB1-inducible coiled-coil 1 [Equus caballus]
          Length = 1590

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/309 (10%), Positives = 94/309 (30%), Gaps = 31/309 (10%)

Query: 355  RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            + +D + F     +      +        +  +    +++    + +   E+ L++    
Sbjct: 906  QNKD-NEFALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREVVLEDLRKL 964

Query: 415  IKDQKLRYYYSQAIRD-----RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
              +   R    +A         L++L       H+        + R   +K   +   + 
Sbjct: 965  HVENDERIQLLRAELQCLEQSHLKELEDTLHVRHTQEFEKVMTDHRISLEKLKKENQQRI 1024

Query: 470  SLVKGKLSKKPSLREAALLLTLINHPAILQ---EQYQELADIRYDNNELQKLWSF----- 521
              ++   +     +E  L    +    +     +   ELA    + +E++ L        
Sbjct: 1025 DQIQESHATVIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRAQQ 1084

Query: 522  ------LFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATT-----E 568
                  L     E        ++Q++ +    +   L +L   +        +      E
Sbjct: 1085 KESLKSLLEQETENLRTEISNLNQKIQDNNENYQVGLAELRTLMTIEKDQCISELISRHE 1144

Query: 569  ANIVDVRQGYQQALALYKR----FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
                 ++    +  +L+ +     + L R+  E++ ++    +  E +K   +     + 
Sbjct: 1145 EESNMLKAELNKVTSLHHQAFEIEKKLKREIVELQSKLDSELSALEKQKDEKITQQEEKY 1204

Query: 625  HIQIHQIES 633
               I ++E 
Sbjct: 1205 EAIIQKLEK 1213


>gi|195400983|ref|XP_002059095.1| GJ15179 [Drosophila virilis]
 gi|194141747|gb|EDW58164.1| GJ15179 [Drosophila virilis]
          Length = 645

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEK 600
            E+   +  ++  +    A   +   +    D  +  Q+ +   +R           +E+
Sbjct: 382 EEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEEMERSQRDLLEAQEMIRRLEE 441

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Q+ Q+ A  +  +       L  +  ++ + ++ EA+
Sbjct: 442 QLKQLQAAKDELELRQ--KELQSMLQRLEEAKNMEAV 476



 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 94/273 (34%), Gaps = 7/273 (2%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K + ++     +           E+          +LE++  N    I+++K    +
Sbjct: 230 DQHKMSKDEWEQSIMTWWQEHRSMLREDAMMEYLKIAQDLEMYGVNYFE-IRNKKGTDLW 288

Query: 425 SQAIRDRLQQLFQKYI-TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                  L    Q    T   G+     +N    ++K   + + + +      + +  + 
Sbjct: 289 LGVDALGLNIYEQDDRLTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRIN 348

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  L L + NH   ++ +  +  D++    + ++  +    +  + +  L         +
Sbjct: 349 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQ 408

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           + + + LKQ+  ++  +       +  I  + +  +Q  A       L  +++E++  + 
Sbjct: 409 QEYEDRLKQMQEEMERSQRDLLEAQEMIRRLEEQLKQLQAA---KDELELRQKELQSMLQ 465

Query: 604 QVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
           ++      E      L   +     ++ +I+ +
Sbjct: 466 RLEEAKNMEAVEKAKLEEEIMAKQQEVQRIQDE 498


>gi|163916357|gb|AAI57670.1| LOC100135363 protein [Xenopus (Silurana) tropicalis]
          Length = 599

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 67/213 (31%), Gaps = 18/213 (8%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           +  R + + L +K + E     +  K+     + K     +M+  L +         R+ 
Sbjct: 329 KEARQKRRALRKKLLAEQEEMEKKMKELQVANETKQQELEVMRKELKEAADRAMEEERKR 388

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-R 544
               T +                R+     ++L   +      Q      E+ Q L   R
Sbjct: 389 QETQTQLQD--------------RFQTEMERELL--IRRQMEAQVAQKSNELQQNLNRVR 432

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              E+ ++L   + D        E   +   +  ++  A       L +++E   K + +
Sbjct: 433 ELEEMYRKLQEALDDEKQARQEEENARLHQARLLEEEAAKRAMLEKLHKEQETAIK-MTE 491

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
              K   +        L E   Q+ Q+E +  +
Sbjct: 492 AEKKELEQIREEKEKALQEAMQQLEQLEKERIL 524


>gi|148678506|gb|EDL10453.1| myosin, heavy polypeptide 10, non-muscle [Mus musculus]
          Length = 1963

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 83/250 (33%), Gaps = 22/250 (8%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454
             + + +L   ++     ++++ L Y   +  ++RLQQ       +           +K  
Sbjct: 1378 EEAKKKLLKDVEALSQRLEEKVLAYDKLEKTKNRLQQELDDLTVDLDHQRQIVSNLEKKQ 1437

Query: 455  RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
            +  DQ    ++ + +   + +   +   RE           ++ +   + L        +
Sbjct: 1438 KKFDQLLAEEKGISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1492

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
             ++L + +      +             +R   + ++++  Q+ +       TE   + +
Sbjct: 1493 NKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRL 1552

Query: 575  RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620
                Q         L  R      +K  + KQ+ ++ A+ E E+    ++          
Sbjct: 1553 EVNMQAMKAQFERDLQTRDEQNEEKKRLLLKQVRELEAELEDERKQRALAVASKKKMEID 1612

Query: 621  LHEVHIQIHQ 630
            L ++  QI  
Sbjct: 1613 LKDLEAQIEA 1622


>gi|119571306|gb|EAW50921.1| spectrin domain with coiled-coils 1, isoform CRA_g [Homo sapiens]
          Length = 830

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 89/280 (31%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   +    E+    
Sbjct: 536 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKMENGSLK 595

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   +    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 596 SHLQGEKQKATEASAVEQTAES--CEVQEMLKVARAEKDLLE--LSCNELRQELLKANGE 651

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 652 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 711

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + E    
Sbjct: 712 VEQHRAVKLHNNQLISELESSVIK----------LEEQKSDLERQLKTLTKQMKEETEEW 761

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 762 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 801


>gi|45219840|gb|AAH67046.1| Dlg5 protein [Mus musculus]
          Length = 1572

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/251 (9%), Positives = 74/251 (29%), Gaps = 33/251 (13%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
           +L   +    D+ W+ E           +              +D      Y   + +R 
Sbjct: 28  ELSKATAQNKDLQWEMELLQSELTELRSKQVKTAKESEKYKEERDAVY-SEYKLIMSERD 86

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSKKPSLREAALLLT 490
           Q + +    +        K  +   ++K  S+ +     +K    +    + +E  +L  
Sbjct: 87  QVISELDKLQTEVELAESKLKSSTSEKKAASEEMEALRQIKDTVTMDAGRANKEVEILR- 145

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                                  + + L   L     E       +  +    +   +++
Sbjct: 146 ----------------------KQCKALCQELKEALQEA---DVAKCRRDWAFQERDKIV 180

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKG 609
            + D             +  + ++ +  +      K+   +SR+ +E+++Q+  Q+  + 
Sbjct: 181 AERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKNDVSRELKELKEQMECQLEKE- 239

Query: 610 EAEKTAILISI 620
              +   L++ 
Sbjct: 240 --ARFRQLMAH 248


>gi|268563438|ref|XP_002646936.1| Hypothetical protein CBG19642 [Caenorhabditis briggsae]
 gi|187024141|emb|CAP36851.1| hypothetical protein CBG_19642 [Caenorhabditis briggsae AF16]
          Length = 306

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 13/220 (5%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + +  ++Q L        +            +          +   ++ KL         
Sbjct: 6   KMLLSKIQALQTGLHEVTNIVIENLTSQKSQQYLTEELVENQKEREIQKKLFGNYVAVHE 65

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             LL L +   I +EQ +++  I  +N +  ++    F++  E+     E+  + L  + 
Sbjct: 66  RTLLELEDSRKIQKEQEEKINIITEENEKFDEIRGK-FNEENEKIREELEDFEENLTSQK 124

Query: 546 FGE------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             E      L+ +L  +  +        +    D    ++  L   +  R + ++++E  
Sbjct: 125 SQEQENREILIAKLTEEFAECEKEREIQKKQFEDYVDVHEGTLLELEDSRKIQKEQKEKI 184

Query: 600 KQIAQVTAKGEA------EKTAILISILHEVHIQIHQIES 633
             + +   K         E+   L   L E+ +++  IE 
Sbjct: 185 NILTEENEKFSDIRQKLNEENEKLREELQELKLKLESIEE 224


>gi|116192971|ref|XP_001222298.1| hypothetical protein CHGG_06203 [Chaetomium globosum CBS 148.51]
 gi|88182116|gb|EAQ89584.1| hypothetical protein CHGG_06203 [Chaetomium globosum CBS 148.51]
          Length = 2320

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 6/141 (4%)

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
              +  +++  QKL     +   E          +R       E+ K+L  +  +     A
Sbjct: 865  EQMLLEHDNRQKLEDERRNVHAEMLRIQQTLESERALALDKEEIFKRLQLREVELEDKLA 924

Query: 566  TTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQ---IAQVTAKGEA--EKTAILIS 619
                +   +       L   KR    + R + ++E+    IA++  +      +   L  
Sbjct: 925  GALEDQEKLEDQLDSLLEAKKRAEDDVERYRAQLEQAAGIIARLEQEKSELAGRVEDLER 984

Query: 620  ILHEVHIQIHQIESQEAMIEG 640
             + ++     +   QEA +EG
Sbjct: 985  AIEDITKAQAERSEQEAALEG 1005



 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 91/267 (34%), Gaps = 29/267 (10%)

Query: 386  WKRETENRSFNTPDERAELEIHLKNCINHIKDQKL---RYYYSQAIRDRLQQLFQKYITE 442
             +R  +       +   +L + +K  +   +       R    + + +++  L +    +
Sbjct: 818  IQRNFQVYIDLCDNPWWQLLVRMKPLLGATRTAAEVKKRDEMIRQLNEQM--LLEHDNRQ 875

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAILQ 499
                 R        R Q+   +     +L K ++ K+  LRE  L   L   +     L+
Sbjct: 876  KLEDERRNVHAEMLRIQQT-LESERALALDKEEIFKRLQLREVELEDKLAGALEDQEKLE 934

Query: 500  EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-----ELLKQLD 554
            +Q   L        E +K        +  Q       I  RL +         E L++  
Sbjct: 935  DQLDSLL-------EAKKRAEDDVERYRAQLEQ-AAGIIARLEQEKSELAGRVEDLERAI 986

Query: 555  RQVRDAGLWSATTEANIVDVRQGYQQALALY-KRFRLLSRQK----EEIEKQI--AQVTA 607
              +  A    +  EA +    +  Q  L L  ++ R L  +     +++E ++  AQ   
Sbjct: 987  EDITKAQAERSEQEAALEGEIKMLQSQLQLKDRKARDLEDKLLKIDQDLEVKLMTAQKEL 1046

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQ 634
            +    K + LI+   EV  Q+ Q+   
Sbjct: 1047 QSSKTKNSQLIAENREVQQQLTQLSKT 1073


>gi|58390368|ref|XP_317674.2| AGAP007826-PA [Anopheles gambiae str. PEST]
 gi|55237888|gb|EAA12256.2| AGAP007826-PA [Anopheles gambiae str. PEST]
          Length = 1376

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 88/275 (32%), Gaps = 18/275 (6%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           +++S    +                      + +   ++ + +++   +    + +R  +
Sbjct: 225 MMKSKAQTENDCGLLEYLEDIVGTTRYKVPLLKINERVDALNEERTEKHNRCKLAEREMK 284

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA-ALLLTLIN 493
             +K  TE   Y +      R R+Q+      +Q  L + K        E       L  
Sbjct: 285 DLEKPKTEAVEYLKQENTLTRTRNQQ------IQKYLCEQKRKIGEFEVERDQAAGILAK 338

Query: 494 HPAILQEQY-QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI--------HQRLCER 544
           H         + +   +    E+++ +  L S    ++  L   +        + R    
Sbjct: 339 HDETYDALKAERVEKEKLVKEEIKQ-YDELVSAKESKESTLKNSLDKFAKVQANMRATNE 397

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              + L+Q+  + +         + N  ++ +   +  +L ++   +  +       +  
Sbjct: 398 RRKKTLEQIAAEEKRLLELQDVPKKNKKEIEESEAKIESLTRQKTEVEAKLTANLATLKD 457

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              K   E+   L + L E+   + + +S  ++ E
Sbjct: 458 -ETKVLLEEKEKLQTELIELKRAVDESKSALSIAE 491


>gi|291546081|emb|CBL19189.1| CHC2 zinc finger [Ruminococcus sp. SR1/5]
          Length = 171

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 9/59 (15%)

Query: 43 CPFHDEKTP--SFHCNDS---KGFYYCFSCHVKGDHLSFLSALLGC----SFIESVQRL 92
          CPF  +     SF    +   K  Y+C+ C   G+ L+  + L G      + E+ + +
Sbjct: 33 CPFCGDLRGKCSFCIRKNGELKNVYHCYHCGASGNMLTLYAELSGIYGRNRYKEAYREI 91


>gi|289742061|gb|ADD19778.1| myosin heavy chain [Glossina morsitans morsitans]
          Length = 761

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 72/261 (27%), Gaps = 22/261 (8%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
           D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 371 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 430

Query: 443 HSGYGRYWKKNARHRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
           +       K   R++ Q       L +    +    ++  + E           A+  E 
Sbjct: 431 NKANAEAQKNIKRYQQQLKDLQTALEEEQRARDDAREQLGISER-------RANALQNEL 483

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFL-----PEEIHQRLCER------GFGELL 550
            +    +   +   ++    L     +               ++L            ELL
Sbjct: 484 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASIAAAKRKLESELQTLHSDLDELL 543

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            +       A            ++R     A    K  + L +Q +E++ ++ +  A   
Sbjct: 544 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 603

Query: 608 KGEAEKTAILISILHEVHIQI 628
           KG  +    L     E+  ++
Sbjct: 604 KGGKKAIQKLEQRCRELENEL 624


>gi|224071141|ref|XP_002189967.1| PREDICTED: huntingtin interacting protein-1-related [Taeniopygia
           guttata]
          Length = 963

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 89/273 (32%), Gaps = 28/273 (10%)

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
             +   +    L+  +  IK +  R  Y   ++ ++  L  +   +     +    N + 
Sbjct: 390 QIESLKKEVETLRAEMEKIKLEAQR--YITQLKAQVNSLEGEVEEQRKQKQKALVDNEQL 447

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLR----EAALLLTLINHPAILQEQYQELADIRYDN 512
           RD+    QR+ Q S    +L  +   +    E         H  ++    + L       
Sbjct: 448 RDELERLQRVKQDSDRSQRLCAEAEKKANATEIRYTKLKEKHSELINTHAELLRKNADTA 507

Query: 513 NEL------QKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWS 564
            +L      Q+  + +      Q   +  E   +L ++     +L ++LD +  +     
Sbjct: 508 KQLTVTQQSQEEVARVKEQLAFQVEQVKREAEMKLEDQSVQLEQLRQELDARREELEQAQ 567

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ-------IAQVTAKGEAEKTAIL 617
            +         +   Q  AL+    +L R   E E +       I +   +   E     
Sbjct: 568 RSLSHAKQAGVELSAQVDALHAEKEVLRRSVSEKECELLSTRGLIQEKELQLGQEADKAT 627

Query: 618 ISILHEVHIQIHQIESQEAMI------EGFGKM 644
              + E+  ++ +  +QE  +      E FG +
Sbjct: 628 -REIRELQGRLLEKSNQEQSLQQKLLDEQFGVL 659


>gi|55962229|emb|CAI11891.1| novel protein [Danio rerio]
          Length = 2431

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 69/183 (37%), Gaps = 8/183 (4%)

Query: 460  KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
            +G    L Q            S RE + + +L    A++ +    L        E +++ 
Sbjct: 928  RGKGLELEQVCEAWRSAQGVHSEREESYMRSLRERDALISQLQTSLHT---RTKEAEEMT 984

Query: 520  SFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
            + L S        + EE+  RL   ER F ELL    RQ ++          N +  R+ 
Sbjct: 985  AVLLSKVSVGAGEVAEELKSRLQLKERLFQELLSDRSRQTQE-HHSQVQDLLNTISSREH 1043

Query: 578  YQQALALYKRFRLLSR--QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            Y +  A      +  +  + +E+ KQ+     +   E T  L+  L     +  + ++Q 
Sbjct: 1044 YIKDSAGRVGQVMAEQTARLQELRKQLGSANPELTQEDTQALMDELQMTLRREREAQTQL 1103

Query: 636  AMI 638
            +++
Sbjct: 1104 SIL 1106


>gi|71656133|ref|XP_816618.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70881759|gb|EAN94767.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 777

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 67/200 (33%), Gaps = 4/200 (2%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           + ++L           G            + P    +  +         P + E A +  
Sbjct: 521 KFEELLNPKRGFWQEEGDSVTIEVGIVLVETPKPLSLAKNASNKDKQTGPKVDEKA-MRQ 579

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           LI    + Q + +   ++     + +K    +     +  + L E       +R   EL 
Sbjct: 580 LIEDEKMAQMKKRIKQEMAKLTRDGEKARKDIAQRAAKGFHDLMERFKAE-KQRIVKELA 638

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           ++  R+ ++                +  ++   L K    LSR+K+E+ +   ++   G 
Sbjct: 639 ERERREQQERQRELEIIRQAQEQNAEMRRRIEELKKESVNLSREKKELTQATKELKKAG- 697

Query: 611 AEKTAILISILHEVHIQIHQ 630
            EK A  ++ ++E    + Q
Sbjct: 698 -EKYAQELNAINEKKASLQQ 716


>gi|281342029|gb|EFB17613.1| hypothetical protein PANDA_009963 [Ailuropoda melanoleuca]
          Length = 1913

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +    +L  +++  V++        +  I D     ++          L R K+ +E+ I
Sbjct: 1712 DADLSQLQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTI 1771

Query: 603  AQVTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              +  + +  +   L      L ++  ++ ++E++
Sbjct: 1772 KDLQHRLDEAEQIALKGGKKQLQKLEARVRELENE 1806



 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 73/273 (26%), Gaps = 36/273 (13%)

Query: 386  WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
             +               +L   +K  +   + +K      +      + L          
Sbjct: 842  IQWNIRAFMGVKNWPWMKLYFKIKPLLKSAETEKEMATMKEEFARLKEAL-------EKS 894

Query: 446  YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
              R  +   +          L      +         R   L+   I   A ++E  + L
Sbjct: 895  EARRKELEEKMVSLLQEKNDLQLQVQAEQDNLNDAEERCDQLIKNKIQLEAKVKEMNERL 954

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE----------------RGFGEL 549
             D    N EL      L  +  E K    +++   L +                     L
Sbjct: 955  EDEEEMNAELTAKKRKLEDECSELKK-DIDDLELTLAKVEKEKHATENKVKNLTEEMAGL 1013

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA-- 607
             + + +  ++        +  + D++    +   L K    L +Q +++E  + Q     
Sbjct: 1014 DEIIAKLTKEKKALQEAHQQALDDLQAEEDKVNTLTKAKVKLEQQVDDLEGSLEQEKKVR 1073

Query: 608  ----------KGEAEKTAILISILHEVHIQIHQ 630
                      +G+ + T   I  L     Q+ +
Sbjct: 1074 MDLERAKRKLEGDLKLTQESIMDLENDKQQLEE 1106


>gi|254173478|ref|ZP_04880150.1| chromosome segregation protein SMC [Thermococcus sp. AM4]
 gi|214032170|gb|EEB73000.1| chromosome segregation protein SMC [Thermococcus sp. AM4]
          Length = 1192

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 10/122 (8%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L + LF   + +     +    ++ +R    LL +      +      T +     + + 
Sbjct: 698 LRNELFELRMRKSELSKDL---QVAQREMERLLAEDRALKEEIETAEETIKKLEAKIEEY 754

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
             +   L  R   L R++E++++ +       E  +   L + + EV  QI +++ + + 
Sbjct: 755 RGEIAKLRGRIERLERKREKLKRAL-------ENPEARELNAKIREVEGQIAKLKEELSR 807

Query: 638 IE 639
           +E
Sbjct: 808 VE 809


>gi|74220835|dbj|BAE31384.1| unnamed protein product [Mus musculus]
          Length = 574

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         E E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|332358949|gb|EGJ36770.1| cell division protein Smc [Streptococcus sanguinis SK49]
          Length = 1178

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 45/373 (12%), Positives = 107/373 (28%), Gaps = 59/373 (15%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             I    D +        +  D+    +  G   +   +      +       +      
Sbjct: 102 RHIYRSGDSEYKIDGKKVRLRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIF 161

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK---------------DQK 419
              +  L     ++ETE++   T D    LE  +    + +K               D +
Sbjct: 162 EEAAGVLKYKTRRKETESKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQ 221

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y   +  +L    +K I          ++ A +  ++   +   Q+   K     +
Sbjct: 222 RRELYLDVLVAQLTANKEKLIKAEEDLTNIQQELAAYYSKRDELEVENQTLKAKRHELNQ 281

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDN-----------NELQKLWSFL--FSDF 526
               +     +L+    ++ +  +++   + ++             L  L   L      
Sbjct: 282 TLSDDQ---ASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLAQIESN 338

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           +E K     +I  +L +       + +     +   +S   +  I  +R+   Q + L +
Sbjct: 339 IEDKQAELSQIAAQLTDNE-----ESIAALEAELADFSDDPDQLIEHLRE---QYVKLMQ 390

Query: 587 RFRLLSRQKEEIEKQIA--------------------QVTAKGEAEKTAILISILHEVHI 626
               LS     +E Q+A                    + +   E      L      +  
Sbjct: 391 EEANLSNDLTSLESQLASELKLAESKKADFAKLQADLEASQTQEQAGLEELEIARQALKT 450

Query: 627 QIHQIESQEAMIE 639
            +   +SQ  ++E
Sbjct: 451 LLADYQSQVQLVE 463



 Score = 37.9 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 97/285 (34%), Gaps = 18/285 (6%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             +  +  ++V  L        +  E+ +    +  A      +  + +   +  R+  +
Sbjct: 221 QRRELYLDVLVAQLTANKEKLIKAEEDLTNIQQELAAYYSKRDELEVENQTLKAKRHELN 280

Query: 426 QAIRDRLQQLFQKYIT----EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           Q + D    L +        E        + +     ++   +RL   S    ++     
Sbjct: 281 QTLSDDQASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLAQIESNIE 340

Query: 482 LREAALLLTLINHPAILQEQYQELADI-----RYDNNELQKLWSFLFSDFVE--QKYFLP 534
            ++A L          L +  + +A +      + ++   +L   L   +V+  Q+    
Sbjct: 341 DKQAELSQIAAQ----LTDNEESIAALEAELADFSDDP-DQLIEHLREQYVKLMQEEANL 395

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
                 L  +     LK  + +  D     A  EA+    + G ++     +  + L   
Sbjct: 396 SNDLTSLESQ-LASELKLAESKKADFAKLQADLEASQTQEQAGLEELEIARQALKTLLAD 454

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            +   + + ++ A  + ++T  +  +L ++  +  +  S EA+++
Sbjct: 455 YQSQVQLVEKLEADYKHQQT-KMFELLDDLKNKQARSNSLEAILK 498


>gi|301756472|ref|XP_002914084.1| PREDICTED: girdin-like [Ailuropoda melanoleuca]
          Length = 1873

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 72/231 (31%), Gaps = 20/231 (8%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    +     L+Q   +   +     +  K+  +  + K  +       +   +   K 
Sbjct: 809  RLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENNVKIGNLEKENKT 868

Query: 481  SLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +E ++   + I    + +E  + +     D   L  L   L S          E++  
Sbjct: 869  LFKEISIYKESCIRLKELEKENKELVKRATIDIKTLVTLREDLVS----------EKLKT 918

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEI 598
            +       +L  +L++   +        ++     +    +  +  K+   +  +    +
Sbjct: 919  QQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDRYKLLESKLESTLKKSLEIKEEKIAAL 978

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIEGFGKMSG 646
            E ++ + T          L   L  V      + Q + +E M++     SG
Sbjct: 979  EARLEESTNYN-----QQLRQELKTVKKNYEALKQRQDEERMVQSSPPTSG 1024



 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/159 (10%), Positives = 56/159 (35%), Gaps = 26/159 (16%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--RLCERGFGELLKQLDRQ 556
           +E  + +  + +D      + + +      Q+     +  +   + +     LLK +   
Sbjct: 139 EEFIERIQGLDFDTKA--AVAAHIQEITHNQENVFDLQWMEVTDMSQEEIEPLLKNMALH 196

Query: 557 VRDAGLWSATTEANIVDVRQGYQQA------------------LALYKRFRLLSRQKEEI 598
           ++            I+++ +                       +   +  + LS +  + 
Sbjct: 197 LKRLIDERDEHSETIIELSEERDGLHFLPHASSSAQSPCGSPGMKRTESRQHLSVELADA 256

Query: 599 EKQIAQVTAKGEAEKTAILI---SILHEVHIQIHQIESQ 634
           + +I ++  + E EKT  L+     L ++ I++ +++ +
Sbjct: 257 KAKIRRLRQELE-EKTEQLLDCKQELEQMEIELKRLQQE 294


>gi|297297517|ref|XP_001102827.2| PREDICTED: myosin-6-like [Macaca mulatta]
          Length = 1937

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 94/260 (36%), Gaps = 9/260 (3%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + + +  ++ ++        S+    R+++  +  + E 
Sbjct: 1566 NQIKAEIERKLAEKDEEMEQAKRNHQRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1626 EIQLSHANRMAVEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1685

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      E    +L  +++  V
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMESDLTQLQSEVEEAV 1745

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
            ++        +  I D     ++          L R K+ +E+ I  +  + +  +   L
Sbjct: 1746 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

Query: 618  ---ISILHEVHIQIHQIESQ 634
                  L ++  ++ ++E +
Sbjct: 1806 KGGKKQLQKLEARVRELEGE 1825


>gi|291403583|ref|XP_002718130.1| PREDICTED: myosin, heavy chain 7, cardiac muscle, beta [Oryctolagus
            cuniculus]
          Length = 1935

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1566 NQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1626 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRVNDDLKENIAIVERRNNLLQAEL 1685

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1745

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1746 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1806 KGGKKQLQKLEARVRELENELEAEQKRNA 1834


>gi|260892619|ref|YP_003238716.1| ParB domain protein nuclease [Ammonifex degensii KC4]
 gi|260864760|gb|ACX51866.1| ParB domain protein nuclease [Ammonifex degensii KC4]
          Length = 458

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 15/126 (11%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEE-IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
           ++L  L   L S     K           L      +LL  L          +   + ++
Sbjct: 184 DKLNDLIPELQSLVASGKLGSTAAYFLAFLPPEEQRQLLGVLG--------ETGMGDLSV 235

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQ----IAQVTAKGEAEKTAILISILHEVHIQ 627
              ++  ++  A  ++   L R    +E++    + +   K +  K   L   L E+  Q
Sbjct: 236 KQAQELRKELEAERRKKEDLLRLVASLEEEKNRVLREAQQKEKKAKETEL--RLRELEKQ 293

Query: 628 IHQIES 633
           +  +  
Sbjct: 294 LASLRE 299


>gi|253747343|gb|EET02105.1| Coiled-coil protein [Giardia intestinalis ATCC 50581]
          Length = 1671

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 52/133 (39%), Gaps = 20/133 (15%)

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEI------HQRLCERGFGELL-KQLDRQVRDAG 561
           +  +   +++   L      +    P  +       QR+       L+ ++++R++    
Sbjct: 815 KLCDKLNREI-EDLTEQLNSRSNVDPAVLTMLKEAQQRIKTLEARPLIPEEVERELTALR 873

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
               T+E +++D R+  ++   L +      ++ EE++++I +  +             +
Sbjct: 874 EQLTTSEKDLIDARELERRLKELEQLLEERDKEIEELKREIKEKNS------------RI 921

Query: 622 HEVHIQIHQIESQ 634
            E+  +I   +S 
Sbjct: 922 QELEYRIAAAQST 934


>gi|224809474|ref|NP_001138994.1| ankycorbin isoform b [Homo sapiens]
          Length = 951

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 101/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 565 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 622

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 623 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLN 682

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 683 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 741

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 742 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 801

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 802 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 839


>gi|198415434|ref|XP_002119114.1| PREDICTED: hypothetical protein [Ciona intestinalis]
          Length = 439

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 73/232 (31%), Gaps = 20/232 (8%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y   +R  L  + +    +           +R           +Q  L K  + K     
Sbjct: 83  YIDKVRS-LTAVNRTLEIKIKQLEANRVVPSRSGQLYEAQLHKLQRELEKAVVEKTRIEI 141

Query: 484 EAALLLTLINHPAILQEQYQELADI-RYDNNELQKLWSFLFSDFVEQKYFLP--EEIHQR 540
           E   L         ++ + +   +  ++   E   L   +    + +       E + + 
Sbjct: 142 E---LENCYRELDAIRLKLEREEEDRKFAEEESASLRKDVDQATLARTELETKVESLQEE 198

Query: 541 LC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR----- 593
           L    R   E ++ L  Q+    ++S   +    D+ +  +   A Y+R    ++     
Sbjct: 199 LDLVRRSTDEDIRVLTEQLSSTTVYSENVDEPTTDLSESLKDVRAAYERLTQKNKIEIEG 258

Query: 594 ----QKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               +  +++ Q+ +   T K    +   L   L  V  ++    +  + IE
Sbjct: 259 YYKTKISDLQNQLKEEAGTNKSSKTEVLELRRQLQSVTNELESTANNNSAIE 310


>gi|183235387|ref|XP_650223.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|169800582|gb|EAL44837.2| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 1073

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/269 (8%), Positives = 76/269 (28%), Gaps = 12/269 (4%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                      +            +       +E+   +   +     + D+ LR   S+
Sbjct: 254 NPETVYDNANNAYSNGGAGKYVSRQYDKQPIDNEQQFYQFGGRPYNPPLPDESLRNIVSR 313

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNAR-----HRDQKGPSQRLMQSSLVKGKLSKKPS 481
            +  RL +    Y   +    R    N        R Q+   + +     ++  + K   
Sbjct: 314 ELDKRLGEEGSFYKENNKLQKRIVDDNKSLYRAILRAQQDNLKNVHHIERLESAIKKYKQ 373

Query: 482 LREAAL-LLTLIN-HPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEEI 537
             E  + +  L++ +  ++ E   ++ +++    +   + + + +     EQ   L   +
Sbjct: 374 NAERFVTVEDLVHENREMINENVNKINELKLQFGDFIPRNVRTQIKD-LTEQNSVLKRRV 432

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            Q     G      +L+              + + ++ +       L  ++     + + 
Sbjct: 433 FQIERNNGIFVTRAELNAFRDFYEPLIEKQGSRLQNIEERVNVMRGLIDKYPAFENELQN 492

Query: 598 IEKQIAQVTAKGEA--EKTAILISILHEV 624
           +      +        +        L+ +
Sbjct: 493 LSNAYQNMGMVFSKQYDDLNSQFRHLNTI 521


>gi|149178249|ref|ZP_01856842.1| WD-repeat protein [Planctomyces maris DSM 8797]
 gi|148842898|gb|EDL57268.1| WD-repeat protein [Planctomyces maris DSM 8797]
          Length = 561

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 3/111 (2%)

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
           F EQ      ++      +   ++  +L +   +     A  +     ++        L 
Sbjct: 63  FAEQDAAKASKLTDA-QAKAVNQITAELKQADSEISKLQAEIQNAKQQIKTETDALKQLQ 121

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQ 634
           ++ + +S +K + +K   Q     EA K     L   L ++  Q+  +E  
Sbjct: 122 QQLKAISEKKSDDKKTEVQANESAEAAKLKAETLSQELKQLQKQLKMLEQS 172


>gi|119575205|gb|EAW54818.1| golgi autoantigen, golgin subfamily a, 3, isoform CRA_b [Homo
           sapiens]
          Length = 1491

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 528 EQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           E      E    ++ E       +L ++L+    +        ++     +Q  Q  L L
Sbjct: 646 EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTL 705

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGE-----AEKTAILISILHEVHIQIHQIESQEAMIE 639
            +R + L   ++E    + Q+T   E      +    L +   E+  ++ +++ + A  E
Sbjct: 706 LQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASRE 765


>gi|114587773|ref|XP_001136307.1| PREDICTED: TATA element modulatory factor 1 isoform 2 [Pan
           troglodytes]
          Length = 907

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 4/124 (3%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANI 571
            L   +  L            E     L        EL   L++   +A     T    +
Sbjct: 473 ALDSAYKELTDLHKANAAKDSEAQEAALSREMKAKEELSAALEKAQEEARQQQETLAIQV 532

Query: 572 VDVRQGYQQALAL-YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            D+R   Q+      ++   L  +  E+++++ +   +   E +  + S    +  QI  
Sbjct: 533 GDLRLALQRTEQAGARKEDYLRHEIGELQQRLQEAENR-NQELSQSVSSTTRPLLRQIEN 591

Query: 631 IESQ 634
           +++ 
Sbjct: 592 LQAT 595


>gi|37039909|gb|AAQ63889.2| retinoic acid induced 14 isoform [Homo sapiens]
          Length = 972

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 91/275 (33%), Gaps = 21/275 (7%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K   +  + +         K            + +EL    K     ++D + R   
Sbjct: 601 MELKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSL 660

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ----SSLVKGKLSKKP 480
                + + +   + + + +   R   ++A    +   S+ L +      LV  +     
Sbjct: 661 EDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLNELTQLKQLVDAQKENSV 720

Query: 481 SLREAALLLTLINHPAILQEQYQELADI--RYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           S+ E   L  +       +E  ++++++     + E++ L   L    +E+K  + + + 
Sbjct: 721 SITEH--LQVITTLRTAAKEMEEKISNLKEHLASKEVEVLK--LEKQLLEEKAAMTDAM- 775

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             +    + +L   L+ +V         +      V     Q          + R+KE I
Sbjct: 776 --VPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQI---RSEVSQVKREKENI 830

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +  +     K + ++   L+    +   ++ +++ 
Sbjct: 831 QTLL-----KSKEQEVNELLQKFQQAQEELAEMKR 860


>gi|50510897|dbj|BAD32434.1| mKIAA1361 protein [Mus musculus]
          Length = 345

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 53/158 (33%), Gaps = 25/158 (15%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              + + L + L            + + +RL E    +L    ++         +T    
Sbjct: 77  QTRQYKALRNHLLE---TTPKSEHKAVLKRLKEEQTRKLAILAEQYDHSINEMLSTQALR 133

Query: 571 IVDVRQGYQQALALYKRFRLL-----------------SRQKEEIEKQI---AQVTAKGE 610
           + + ++   Q L +  +  L                   R+  E+E+++     +  +  
Sbjct: 134 LDEAQEAECQVLKMQLQQELELLNAYQSKIKMQAEAQHDRELRELEQRVSLRRALLEQKI 193

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            E+   L +   E    + + +++E  IE F   S RL
Sbjct: 194 EEEMLALQNERTERIRSLLERQARE--IEAFDSESMRL 229


>gi|25089760|sp|Q62036|AZI1_MOUSE RecName: Full=5-azacytidine-induced protein 1; AltName:
           Full=Pre-acrosome localization protein 1
 gi|1199931|dbj|BAA07868.1| pre-acrosome localization protein [Mus musculus]
 gi|1912072|dbj|BAA19002.1| AZ-1 [Mus musculus]
 gi|148702778|gb|EDL34725.1| 5-azacytidine induced gene 1 [Mus musculus]
          Length = 1060

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 84/280 (30%), Gaps = 21/280 (7%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           D         +    + + +     +   +R          +++  L    +  +  +K 
Sbjct: 576 DLTVRRVKETEKELTRQLRQQKEQYEATIQRHLS-FIDQLIEDKKVLSEKCEAVVAELKH 634

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R       R+R+ Q+ +++  E            + R +K  +++  +   +  +  
Sbjct: 635 GDQR------CRERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRG- 687

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPE 535
                 E  +   +  H   ++     L +      E Q     L    +  +      E
Sbjct: 688 -----LEPEIQKLIAKHKQEVRRLRG-LHEAELQQREEQAAQRHLRQAEELRQHLDRERE 741

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-QQALALYKRFRLLSRQ 594
            + Q+  ER      + L+++ R            + + ++   QQA         L +Q
Sbjct: 742 VLGQQERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERLGQQAARQRAELEELRQQ 801

Query: 595 KEE----IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            EE    + + +     +   E+       L  +  Q+  
Sbjct: 802 LEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEA 841


>gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1]
 gi|18203646|sp|Q9YFZ1|RAD50_AERPE RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|5103499|dbj|BAA79020.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1]
          Length = 919

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 81/244 (33%), Gaps = 27/244 (11%)

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            +   +    L      ++  + R    + + + L++  +    E         +     
Sbjct: 533 RELGFQTPEDLAKAEQKLRMLRERLEELRKLENSLEEKVRNLSREEVALREAKTRALEVL 592

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
            + G  +   +  L    LS +    E  L+            + ++LA  R      + 
Sbjct: 593 QRLGIKEEEAREKL--KTLSSESKKLERMLVS-----------KAEDLAT-RLGITAYRS 638

Query: 518 LWSFLFSDFVEQKYFLPE--EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           L   L       +    E   I +RL E       ++L  +       +      + ++ 
Sbjct: 639 LDDLLEKAREALEGVDKELSAIERRLEEA------RRLKEEAAKLKWEAEQVMKRLEELE 692

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
              ++      R   +  + +E++  +A++      ++ + +   + E+  +I +++S++
Sbjct: 693 AEEKKLRKEVSRKSEIEARLKEVQNTLAELD-----DRISRIDREMGELQTRIREMKSRK 747

Query: 636 AMIE 639
           A  E
Sbjct: 748 ASGE 751


>gi|327540353|gb|EGF26939.1| conserved hypothetical protein, membrane [Rhodopirellula baltica
           WH47]
          Length = 1310

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/275 (10%), Positives = 77/275 (28%), Gaps = 9/275 (3%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVD--MLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           P+   +   +    +L   +    D      +          +E  E        +   +
Sbjct: 718 PEQQAQRETRQVLSRLSELARRQQDLNEELAQLQSAMQLADDEEEKEELRRQLERLREQQ 777

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
              LR      + +R+         + +       +       +   Q+   ++L  GK 
Sbjct: 778 QDMLRQT--DELMERMNSPENASNMQEASEQLEQTRENIREAGEAMEQQDAATALSSGKR 835

Query: 477 SKKP--SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534
           +++   S+RE             +Q       ++     EL++  S +     +      
Sbjct: 836 AERELESVREEIREQAAGQFNEAMQSMRDRARELNTQQKELEEQLSEM-DAPSKSPGLRS 894

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
               + L +    E  + L   + D        E +   + Q    A    ++ R    +
Sbjct: 895 SGNREELKDA-LTEQRESLGELMEDIEEVVQEAEESEPLLAQNLYDAFRETQQRRT-EER 952

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +   + + +   +   +        + E+  QI 
Sbjct: 953 LDAASQLLQRGFDEQSQQMAGQAGEAIQELSEQIE 987



 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 66/203 (32%), Gaps = 11/203 (5%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           Q+ + E        +   + + Q  P Q+  + +        + + R+  L   L    +
Sbjct: 693 QQQLDELELDQEQDRYETQQQAQMTPEQQAQRETRQVLSRLSELARRQQDLNEELAQLQS 752

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            +Q    E         +L++L         +      +E+ +R+        +++   Q
Sbjct: 753 AMQLADDEEEKEELR-RQLERLREQ-----QQDMLRQTDELMERMNSPENASNMQEASEQ 806

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           +             +       Q A       +   R+ E + ++I +  A    E    
Sbjct: 807 LEQTRENIREAGEAMEQ-----QDAATALSSGKRAERELESVREEIREQAAGQFNEAMQS 861

Query: 617 LISILHEVHIQIHQIESQEAMIE 639
           +     E++ Q  ++E Q + ++
Sbjct: 862 MRDRARELNTQQKELEEQLSEMD 884


>gi|326434799|gb|EGD80369.1| hypothetical protein PTSG_10624 [Salpingoeca sp. ATCC 50818]
          Length = 745

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/335 (9%), Positives = 91/335 (27%), Gaps = 23/335 (6%)

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
            + +    +  D D      +                      S G+DP           
Sbjct: 97  KRETYVQRILADNDLAQHLMSSIQAIQAHLQQAAEEVTRVRAGSEGDDPVIARLQKDLDE 156

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
               +       D +     E        + A          +  +DQ+  +  + A+ +
Sbjct: 157 TRHRLRHLEIEHDAVVDDNRELERELGETKAALAAAEASGSGSSEEDQQRIHDLTTALAE 216

Query: 431 RLQQLFQKYITE-------HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               L  +                   ++  R   +    Q+ +       + + +    
Sbjct: 217 MEDALKAEQQDHEATKKDCQRALAEMNRQLDRAMAESAEHQKQLDEMQELRQQADQVPAL 276

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E+ L          ++ + Q ++    +   ++++                E+    L E
Sbjct: 277 ESRLATLKTQLEEAVELKRQAMSAQEQNAENIKRIVEL----------ETKEKRVDELQE 326

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
               E  K+L     +       ++    +          L +    L R+K  +E+Q+ 
Sbjct: 327 E-LAETSKKLAALEEELLDEQKRSDRLQHEADTQRDTCARLKEDKTRLLREKGALEQQL- 384

Query: 604 QVTAKGEAEKTAI----LISILHEVHIQIHQIESQ 634
           ++++ G+     +     +  L  +  +   +++Q
Sbjct: 385 ELSSAGDISAAGLGGGVDLERLIRLEHENATLKAQ 419


>gi|293343283|ref|XP_001070888.2| PREDICTED: hook homolog 2 (Drosophila) [Rattus norvegicus]
          Length = 719

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 88/262 (33%), Gaps = 23/262 (8%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  DE  +     +     +   + R    Q +R +++QL ++         +   +  R
Sbjct: 295 DEMDELRQSSERARQLEATLNSCRRRLGELQELRRQVRQLEERNAGHAERTRQLEDELRR 354

Query: 456 HRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLT--LINHPAILQEQYQEL----ADI 508
               +     +  Q   ++G+  ++    E  L     L     +L ++ + L      +
Sbjct: 355 AGSLRAQLEAQRRQMQELQGQWQEEAMKAEKWLFECQNLEEKCDLLTKEKERLLTERDSL 414

Query: 509 RYDNNELQ--KLWSFLFSDFVEQKYFLP---EEIHQRLCERGFGELLKQLDRQVRDAGLW 563
           R  N EL+  +L     +         P   E +   +      E L +L  + +     
Sbjct: 415 RETNEELRCAQLQPRGLNQAGLSLDPTPSGLENLAAEILPAELRETLVRLQLENKRLCQQ 474

Query: 564 SATTEANIVDVRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKGEAE 612
            A       ++++  ++A                +   L  Q EE++K + +   K +  
Sbjct: 475 EAADRERQEELQRHLEEANRARHGLEAQQRLNQQQLSELRAQVEELQKALQEQGGKTDDV 534

Query: 613 KTAILISILHEVHIQIHQIESQ 634
              +L   L +   ++H+ + +
Sbjct: 535 SPTLLKRKLEDHLQKLHEADLE 556



 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 89/283 (31%), Gaps = 18/283 (6%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +  ++     A ++L+ +  P               N  +   +   +        +   
Sbjct: 139 EESVQHVVMEAIQELMTKDTPD---------SLSPENYGNFDTQSRRYYFLSEEVEEGGD 189

Query: 420 LRYYYSQA------IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           L+ +Y         + +  Q L Q+        GR   ++A     K       Q   ++
Sbjct: 190 LQQHYLDLERQLVLLSEEKQSLAQENAALRERVGRSEVESASGLTAKKLLLLQSQLEQLQ 249

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +  +  S RE   L  +     + + Q +  A       E Q L   +       +   
Sbjct: 250 EENFRLESSREDERLRCVELEREVAELQQRNQALASLS-QEAQALKDEMDELRQSSERAR 308

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             E     C R  GE L++L RQVR     +A        +    ++A +L  +     R
Sbjct: 309 QLEATLNSCRRRLGE-LQELRRQVRQLEERNAGHAERTRQLEDELRRAGSLRAQLEAQRR 367

Query: 594 QKEEIEKQIAQVTAKGEAEKTA-ILISILHEVHIQIHQIESQE 635
           Q +E++ Q  +   K E        +    ++  +  +    E
Sbjct: 368 QMQELQGQWQEEAMKAEKWLFECQNLEEKCDLLTKEKERLLTE 410


>gi|194222430|ref|XP_001500076.2| PREDICTED: similar to coiled-coil domain containing 150 [Equus
            caballus]
          Length = 1452

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/276 (10%), Positives = 80/276 (28%), Gaps = 12/276 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
               A E    + +           E+    T      L  H K      K Q        
Sbjct: 1005 DLEAVEDRESKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDS 1064

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             I    ++                +  AR           M+       ++++ + + A 
Sbjct: 1065 EIAGLKKERALNQQRVQKLEAEVDQWQARMLVVDAQHNNEMEPVQKALDVAREDNRKLAM 1124

Query: 487  LLLTLIN-HPAI---LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--- 539
             L   +  +  +   L +  ++L +   +   L+     +  +   +     E I     
Sbjct: 1125 SLEQALQANNHLQTKLDQVQEKLENKELERQNLETFRERMTEESKMEAELHAERIEALRK 1184

Query: 540  --RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KE 596
              +       +  ++   +++ A   +      +    +  +Q L   ++   +S++  +
Sbjct: 1185 QFQTERETAKKAAQREMTELKKALDEANFRSVEVSRTNRELRQKLTELEKILNISKEKIK 1244

Query: 597  EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
              + QI    +       A  +  + ++  ++ Q+E
Sbjct: 1245 NQKAQIKLHYSA--KANNAQNMERMKQIEKELRQME 1278


>gi|149712602|ref|XP_001493972.1| PREDICTED: similar to EF-hand calcium binding domain 4B [Equus
           caballus]
          Length = 729

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 17/221 (7%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            RL++     + +          +                         +    E     
Sbjct: 72  QRLREELPLSLEDLEDVFDALDADGNGFLTPEEFTTGFSHFFFSQNKPSQEDSSEQ---A 128

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE----EIHQRLCERG 545
             +    + Q + +E  D   ++ E Q  +  L      QK    E    ++  +L +  
Sbjct: 129 AQLQEEKVYQSRGEEDLDDMGEDEEAQ--FQMLMDKLGAQKVLEDESDVKQLWLQLKKDE 186

Query: 546 ------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                 F + L ++  Q+++A       E  +      Y + +     +  + +Q +  +
Sbjct: 187 PHLLSNFEDFLTRIFSQLQEAHEEKNELECALRKKIAAYDEEIQHL--YEEMEQQIKSEK 244

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           +Q      +    ++  L   L     ++ Q+  ++  +EG
Sbjct: 245 EQFLLKDTERFQARSRELEQKLVSKEQELEQLIQKQRRLEG 285


>gi|147815441|emb|CAN74990.1| hypothetical protein VITISV_008657 [Vitis vinifera]
          Length = 1140

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 74/225 (32%), Gaps = 15/225 (6%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +A+ ++++   ++   +        +     R +    Q  ++  + K +L K+  L+E
Sbjct: 449 LKAVAEKIRVEIEEQKLKVHEEREQLEITEEERSEFLRLQSELKQEIEKYRLEKEVLLKE 508

Query: 485 AALLLT----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              L            +L E+  E+     D +E ++    L     E+           
Sbjct: 509 VEDLKLQRETFEREWEVLDEKXAEIEKDLIDVSEQREKLEKLKHSEEERLKTEKLATQDY 568

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LLSRQKEEIE 599
           +        L +           S  +E    +  Q       L +     +  ++EE+E
Sbjct: 569 IQREFESLKLAKESFAASMEHEQSVLSEKAQSEKSQMIHDFELLKRELETDIQNRQEELE 628

Query: 600 KQIAQVTAKGEAEKTAILI----------SILHEVHIQIHQIESQ 634
           KQ+ +     E E+   L             + EV ++  +IE +
Sbjct: 629 KQLQEREKVFEEERERELNNVNYLREVARQEMEEVKLERLRIEKE 673


>gi|294345409|ref|NP_033864.3| 5-azacytidine-induced protein 1 [Mus musculus]
 gi|123229683|emb|CAM22595.1| 5-azacytidine induced 1 [Mus musculus]
 gi|187954399|gb|AAI41109.1| 5-azacytidine induced gene 1 [Mus musculus]
          Length = 1059

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 84/280 (30%), Gaps = 21/280 (7%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           D         +    + + +     +   +R          +++  L    +  +  +K 
Sbjct: 575 DLTVRRVKETEKELTRQLRQQKEQYEATIQRHLS-FIDQLIEDKKVLSEKCEAVVAELKH 633

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              R       R+R+ Q+ +++  E            + R +K  +++  +   +  +  
Sbjct: 634 GDQR------CRERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRG- 686

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPE 535
                 E  +   +  H   ++     L +      E Q     L    +  +      E
Sbjct: 687 -----LEPEIQKLIAKHKQEVRRLRG-LHEAELQQREEQAAQRHLRQAEELRQHLDRERE 740

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-QQALALYKRFRLLSRQ 594
            + Q+  ER      + L+++ R            + + ++   QQA         L +Q
Sbjct: 741 VLGQQERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERLGQQAARQRAELEELRQQ 800

Query: 595 KEE----IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            EE    + + +     +   E+       L  +  Q+  
Sbjct: 801 LEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEA 840


>gi|266456389|ref|NP_705773.2| leucine-rich repeat-containing protein 45 [Mus musculus]
 gi|74142347|dbj|BAE31933.1| unnamed protein product [Mus musculus]
 gi|123287406|emb|CAM27120.1| leucine rich repeat containing 45 [Mus musculus]
 gi|148702846|gb|EDL34793.1| leucine rich repeat containing 45, isoform CRA_a [Mus musculus]
          Length = 670

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 88/270 (32%), Gaps = 17/270 (6%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ---AIRDRLQQLFQKY 439
           D   +  ++        ER E        +  +     +    +      +R  +  Q+ 
Sbjct: 330 DQERQSLSQRHEKERKLERQEAADRESKLLRDLSAASEKNLLLRSQVDELERKARSQQEQ 389

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA---LLLTLINHPA 496
           +              + R  +   +  ++    K  +     L       +   L     
Sbjct: 390 LFLTKQELTNTSAELKIRAIQAEERLDVEKRRAKQNMEDLEKLHSKEVDHMTRHLEESER 449

Query: 497 ILQEQYQELADIRYD-NNELQKLWSFLF-SDFVEQKYFLPEEIHQRLCERG-FGELLKQL 553
            +QE+ Q L  +R     EL ++ + +       ++  +      RL E+     L +++
Sbjct: 450 AMQERVQRLEALRLSLEEELSRMKAAVLSERGQAEEELIKARNQARLEEQHRLAHLEEKI 509

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
               +       T       V +   +   L  +     R+ EE+++++       + EK
Sbjct: 510 RLLAQARDEAQGTCVQQKQMVAESQARVSQLNLQMEGQQRRLEELQQELINK----DQEK 565

Query: 614 TAILISILHEVHIQIHQIE----SQEAMIE 639
            A +  +  E+  Q+ +++    +QEA+ E
Sbjct: 566 VAEVARVRVELQEQMGRMQADLVAQEALRE 595


>gi|212646510|ref|NP_001129903.1| SMAll family member (sma-1) [Caenorhabditis elegans]
 gi|2997690|gb|AAC08577.1| beta chain spectrin homolog Sma1 [Caenorhabditis elegans]
 gi|198446549|emb|CAR64670.1| C. elegans protein R31.1b, confirmed by transcript evidence
            [Caenorhabditis elegans]
 gi|198447242|emb|CAR64676.1| C. elegans protein R31.1b, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 4063

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/294 (9%), Positives = 97/294 (32%), Gaps = 20/294 (6%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
             +     A  K    +          +  +       +    +  +    ++++  + + 
Sbjct: 972  RKFDKLEADMKTNGGTQLKHINDIANDLISEGHGQSRKIEVRQHKINAMWDNLERLRKQR 1031

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                   +R+        +        +++  R+ +     Q L +       L  K + 
Sbjct: 1032 GVRLEATERVADFDTTCESAREWMLSKFEQLDRNPNDVKSLQNLERDLKP---LEDKIAA 1088

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
             E        +HP       +++A       EL+ L + L     E+     +   + + 
Sbjct: 1089 LEKLAAAVKKDHPEEAAAIERKIA-------ELRALHADLLRRAQEKMLLAEQTQGKEMF 1141

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK---EEIE 599
            E    +++  +++      +       ++ +  +  ++   L ++ +    +    +E+ 
Sbjct: 1142 ESALRDMIGWIEK--TRKVMMEDVHPVDVAEAEELLKKHYELGEQIKDKKYEVEYCQELG 1199

Query: 600  KQIAQVTAKGE--AEKTAILISI---LHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            +++ +   +     E+   L+S    L +++ +   I  Q+  ++ F + S R+
Sbjct: 1200 RRLLERNPRMSKVEEQLQNLVSEMASLRDLYRRRDTILKQQLDLQLFNRESERI 1253


>gi|308503629|ref|XP_003113998.1| CRE-RAD-50 protein [Caenorhabditis remanei]
 gi|308261383|gb|EFP05336.1| CRE-RAD-50 protein [Caenorhabditis remanei]
          Length = 1311

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL--LSRQKEEIEKQ 601
                +  + ++ ++ +        E ++      +QQ L L  +     + R+  ++E +
Sbjct: 966  AEQEQNFRMVNERLAENQQRQKRFEDDLRSFDSFHQQELTLKDQLTRMKIERKLRDVENK 1025

Query: 602  IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +     K + EK A L     ++   +  I ++E
Sbjct: 1026 LRTFEGKVDEEKIAELRKEYIQIQNDLRVIGNEE 1059


>gi|300669677|sp|Q9H7C4|SYNCI_HUMAN RecName: Full=Syncoilin; AltName: Full=Syncoilin intermediate
           filament 1; AltName: Full=Syncoilin-1
          Length = 482

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 44/117 (37%), Gaps = 6/117 (5%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QA 581
            +   +      E++ Q+L           L    R +  +      +  D+ + Y+ Q 
Sbjct: 288 LAQLRDAYQKQKEQLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQF 347

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           L L +R    ++  +  + +I ++      E    L +   ++ +Q   +E Q A++
Sbjct: 348 LRLLERKEAGTKALQRTQAEIQEM-----KEALRPLQAEARQLRLQNRNLEDQIALV 399


>gi|297680202|ref|XP_002817891.1| PREDICTED: CAP-Gly domain-containing linker protein 2-like, partial
           [Pongo abelii]
          Length = 733

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 89/255 (34%), Gaps = 18/255 (7%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           +E +  S    D+  +     +  ++ ++    +  Y+Q +     ++ Q          
Sbjct: 328 KEHQRESGVLRDKYEKALKAYQAEVDKLRAANEK--YAQEVAGLKDKVQQATSENMGLMD 385

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            +  K          S   ++++L  G  +++  + E   L  ++    I  E   EL +
Sbjct: 386 NWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGE---LKAVME--GIKMEHQLELGN 440

Query: 508 IRYDNN--------ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           ++  ++        E + L   L     E           +L  +     L+  + Q + 
Sbjct: 441 LQAKHDLETAMHVKEKEALREKLQEAQEELAGLQR-HWRAQLEVQASQHRLELQEAQDQR 499

Query: 560 AGLWSATTEANIVDVR-QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
                   E   +DV  +G  QA+   K    L+ +K    +++ +  A+G+ E    L 
Sbjct: 500 RDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQRAEAQGKQE-VERLR 558

Query: 619 SILHEVHIQIHQIES 633
             L     ++  +E+
Sbjct: 559 EKLLVAENRLQAVEA 573



 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 77/282 (27%), Gaps = 16/282 (5%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +  I         +L    +  ++     E         +        +      ++ ++
Sbjct: 225 EESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEE 284

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                   I +  Q L                   R R      +   +S +++ K  K 
Sbjct: 285 ELTLRRGEIEELQQCLLHSGPPPPDHPDAAETLRLRERLLSASKEHQRESGVLRDKYEKA 344

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEE 536
               +A +      +    QE       ++   +E   L                   E+
Sbjct: 345 LKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGLMDNWKSKLDSLASDHQKSLED 404

Query: 537 IHQRLCERGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           +   L      +   + +L   +    +       N+   +   + A+ + ++   L  +
Sbjct: 405 LKATLNSGPGAQQKEIGELKAVMEGIKMEHQLELGNLQ-AKHDLETAMHVKEKE-ALREK 462

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +E ++++A +                 EV    H++E QEA
Sbjct: 463 LQEAQEELAGL---------QRHWRAQLEVQASQHRLELQEA 495


>gi|170581619|ref|XP_001895760.1| hypothetical protein Bm1_21530 [Brugia malayi]
 gi|158597179|gb|EDP35394.1| hypothetical protein Bm1_21530 [Brugia malayi]
          Length = 412

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/268 (10%), Positives = 76/268 (28%), Gaps = 25/268 (9%)

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
                  ++R  +   ++  +        +   D   R +     R++++ L +     +
Sbjct: 86  HDIFNSVDSRKSDLESKKLSVIDLNNEIQHLRNDATTRKHLESEFREKMEILERNIKETY 145

Query: 444 SG------------YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
                              K+N     Q    +   Q+ +V   +   P    A L    
Sbjct: 146 VQTETIQMEMKAICEANIEKENKLMEAQNEIKRLTFQNDVVDRDIVNSPDRLNAELTXLT 205

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
                  +E+ +E   I        ++ + L     +                   E   
Sbjct: 206 NRKKWEYKEKQKERIMIGRSIEHFMEILNKLRERQKDGAIIEETLAAAEEQRNEAKEAYM 265

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLSRQKEEIEKQIAQVTAKGE 610
            ++ ++          E         ++++L   K     L+ Q ++I +++     +  
Sbjct: 266 NIEEKLTKERNKLLAMEKEFEKEESLHEKSLKDIKEHLATLNEQVKDIRRRMQDFDKEN- 324

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMI 638
                       EV  +I +++++ A +
Sbjct: 325 -----------VEVQREIAKVKNEIAAL 341


>gi|149631816|ref|XP_001509016.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform 2
            [Ornithorhynchus anatinus]
          Length = 1979

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 89/294 (30%), Gaps = 19/294 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                    +   +KL V +        K   + +     + +  LE H+      + D K
Sbjct: 1325 QDTQELLQEETRQKLNVSTKLRQLEDEKNSLQEQLDEETEAKQNLERHVSTLNVQLSDSK 1384

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-------- 471
             +     +  + L++  +K   E  G  + +++ A   D+   ++  +Q  L        
Sbjct: 1385 KKLQDLASTVENLEEGKKKLQKEIEGLTQQFEEKAASYDKLEKTKNRLQQELDDLVVDLD 1444

Query: 472  VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE----LQKLWSFLFSDFV 527
             + +L      ++      L     I  +   E      +  E       L   L     
Sbjct: 1445 NQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKALSLARALEEALE 1504

Query: 528  EQKYFLPEE--IHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
             ++        +   + +        G+ + +L++  R         +  + ++    Q 
Sbjct: 1505 SKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQA 1564

Query: 581  ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                  R  +  +  +   ++  Q   +   EK   L   LHE+  ++     Q
Sbjct: 1565 TEDAKLRLEVNMQALKGQFERDLQARDEQNEEKRRQLQKQLHELETELEDERKQ 1618


>gi|119586555|gb|EAW66151.1| myosin, heavy polypeptide 7, cardiac muscle, beta, isoform CRA_a
            [Homo sapiens]
          Length = 1945

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1567 NQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1626

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1627 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1686

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1687 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1746

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1747 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1806

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1807 KGGKKQLQKLEARVRELENELEAEQKRNA 1835


>gi|308805655|ref|XP_003080139.1| kinesin K39, putative (ISS) [Ostreococcus tauri]
 gi|116058599|emb|CAL54306.1| kinesin K39, putative (ISS) [Ostreococcus tauri]
          Length = 542

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 100/352 (28%), Gaps = 53/352 (15%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D+ G R A    ++               +++ +          + A  +    ++    
Sbjct: 104 DERGERDAGAKAEMKEIGERLEAAEREASMAKTK----IAEMERERAAFETRAGAMDGEV 159

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD---RLQQLFQKYI 440
              + + +  S    D R  L          ++D       +    +   +L++      
Sbjct: 160 RALEAKAKESSKELSDAREALREAETRANESMRDAVESKERAAREAEAVTKLREALDDAR 219

Query: 441 TEHSGYGRYWK--KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT-------- 490
            +     R  +  + +  R   G   R+M+ S      + K    EA LL          
Sbjct: 220 AKTEAAERETESFRRSAERTSSGAESRVMELSAEMEAKTAKLQSLEAELLSISSAAEEEK 279

Query: 491 ---------LINHPAILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                    L+N     +   +E+   +  + +   + L         E+      ++ Q
Sbjct: 280 ATLATENVRLMNKLDECRLAMEEVESEKEVFASECERALRE------SEEHQRTVAQLRQ 333

Query: 540 RLCERGF-----GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR------- 587
           +L E           L  L +   +  +  A  E    +  +    A     R       
Sbjct: 334 KLQEAESLAESNANELNSL-KLSSETNIAVAQAEKRAQEAEEALSMAQDDTNRIKSTSES 392

Query: 588 -FRLLSRQKEEIEKQIAQVTAK-----GEAEKTAILISILHEVHIQIHQIES 633
               +  +   +E  +    +K       +++   L   L   + QI Q++S
Sbjct: 393 QLNEMRAKLASVESALKAERSKSPPQPNNSDEMMGLRQQLDTANRQIEQLQS 444


>gi|86565266|ref|NP_508847.2| Lin-5 (Five) Interacting protein family member (lfi-1)
            [Caenorhabditis elegans]
 gi|71533335|gb|AAZ32792.1| Lin-5 (five) interacting protein protein 1, isoform b [Caenorhabditis
            elegans]
          Length = 2117

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIAQV 605
             E ++++++ + D        E  I +V   +++ L   +  +  L R+  E+E +++Q+
Sbjct: 1128 KERIERIEKNILDRYHDDELVEHKIREVNDRWKRELERLENEKDDLERRIRELEDELSQI 1187

Query: 606  TAKGEA------EKTAILISILHEVHIQIHQI 631
                +       E      + + ++   I  +
Sbjct: 1188 GRGNDKTENDITELKRKHAAEIDKLKSDISAL 1219



 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/315 (9%), Positives = 96/315 (30%), Gaps = 44/315 (13%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     A      ++   ++    +   +   ++ D+  +L   +    N I+++     
Sbjct: 678 KLRASEAERVAAEKARKFLEDELAKLQASFQKSSTDDARKLRDEMDEHTNSIQEEFKTR- 736

Query: 424 YSQAIRDRLQQLFQK---------YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
               +  R++ L ++          + +          + + R ++  +Q      + + 
Sbjct: 737 -IDELNRRVENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRN 795

Query: 475 KLSKKPSLREA---------ALLLTLINHPAILQEQYQELADIRYDNNELQK-------- 517
                  LRE           +L  L +         Q+L +I+   ++ QK        
Sbjct: 796 IQKDLDDLREKYDRVHTDNEKILGELEHAQKAAHLAEQQLKEIKIQRDDYQKQKDEHARH 855

Query: 518 ---LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
              +   L ++   ++                 + +   + Q+      +   +  I   
Sbjct: 856 LFDIRHKLETEIKGRQDLEKNGARNNDELDKLRQTISDYESQINLLRRHNDELDTTIKGH 915

Query: 575 RQGYQQALALYK-------RFRLLSRQKEEIEKQI--AQVTAKGE----AEKTAILISIL 621
           +                  +   L+++ ++ ++ I   ++   G+     E    L + L
Sbjct: 916 QGKITHLENELHSRSGEIEKLNDLNQRLQKEKQDILNQKLKLDGDVQALKETIRKLENEL 975

Query: 622 HEVHIQIHQIESQEA 636
            ++  +  ++  +EA
Sbjct: 976 EKLRNENKELVGKEA 990


>gi|70729273|ref|YP_259010.1| chromosome segregation SMC protein [Pseudomonas fluorescens Pf-5]
 gi|68343572|gb|AAY91178.1| chromosome segregation SMC protein [Pseudomonas fluorescens Pf-5]
          Length = 1162

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELER 203

Query: 601 QIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           Q+ ++  + + AEK     +   ++  Q+  +  Q A+ E  G
Sbjct: 204 QLERLHRQAQAAEKYQEYKAEERQLKAQLSALRWQ-ALNEQVG 245


>gi|76801849|ref|YP_326857.1| stress response protein [Natronomonas pharaonis DSM 2160]
 gi|76557714|emb|CAI49297.1| probable stress response protein [Natronomonas pharaonis DSM 2160]
          Length = 268

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 527 VEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ---- 580
            E   +  E++   L +  +G  +L  Q  R            E +    RQ  +Q    
Sbjct: 26  HETLDYSYEQLRDELQDVKQGIADLTTQKKRLEIQKNRLEENVEKHNEQARQAVEQGRDD 85

Query: 581 -ALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIES 633
            A    ++ +   +Q E++E QIA +    +   EK   L + + E   +   +++
Sbjct: 86  LARRALEKKKQKMQQIEDLETQIADLQNTQDNLVEKKNELQNRIQEFRTEKETMKA 141


>gi|332236809|ref|XP_003267593.1| PREDICTED: LOW QUALITY PROTEIN: myosin-Vb-like [Nomascus
           leucogenys]
          Length = 1833

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 96/293 (32%), Gaps = 10/293 (3%)

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
              VL +  +DPD F     K  F    V  L  +     R        T     +   +
Sbjct: 710 CRSVLENLIKDPDKFQFGRTKIFFRAGQVAYLEKLRADKFRTATIMIQKTVRGWLQKVKY 769

Query: 408 LKNCINHIKDQKL-RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            +     +  Q+  R + ++ + + L++     + +     +   +  +   +     + 
Sbjct: 770 RRLKGATLTLQRYCRGHLARRLAEHLRRTRAAVVLQKHYRMQRAHQAYQRVRRAAIVIQA 829

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
              ++   +  ++   R       +I     + +  +EL  +R +    + L     +  
Sbjct: 830 FIRAMFVRRTYRQXRFRRLRDAAIVIQCAFRMLKARRELKALRIEARSAEHLKR--LNVG 887

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           +E K    +        + F  L +QL        +     +  +V  +Q   +  +L  
Sbjct: 888 MENKVVQLQRKIDE-QNKEFKTLSEQLSMTTSTYTMEVERLKKELVHYQQSPGEDTSLR- 945

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               L  + E +  ++ +  ++ +            E+  ++  +E + A+++
Sbjct: 946 ----LQEEVESLRTELHRAHSERKI-LEDAHSREKDELRKRVADLEQENALLK 993


>gi|332225901|ref|XP_003262123.1| PREDICTED: ralA-binding protein 1 isoform 1 [Nomascus leucogenys]
 gi|332225903|ref|XP_003262124.1| PREDICTED: ralA-binding protein 1 isoform 2 [Nomascus leucogenys]
          Length = 655

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 76/256 (29%), Gaps = 35/256 (13%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-----QAIRDRLQQLFQKYI---- 440
            +  +             L      IK++  R  +      + ++  ++ L ++      
Sbjct: 373 LKQVTKPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGIKDLSKEERLWEV 432

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                  +   + A+ ++ +    + + S   +    ++ +  E  + + L     IL E
Sbjct: 433 QRILTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVINILLAQENEILTE 492

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           Q + LA  ++       L   + S                  +     L  ++       
Sbjct: 493 QEELLAMEQF-------LRRQIAS-----------------EKEEIERLRAEIAEIQSRQ 528

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILI 618
               + TE    +     +    L      L RQ EE+E +   +      E E    L 
Sbjct: 529 QHGRSETEEYSSESESESEDEEELQIILEDLQRQNEELEIKNNHLNQAIHEEREAIIELR 588

Query: 619 SILHEVHIQIHQIESQ 634
             L  + +Q  + E Q
Sbjct: 589 VQLRLLQMQRAKAEQQ 604


>gi|332078366|emb|CCA65606.1| Hypothetical protein R31.1c [Caenorhabditis elegans]
 gi|332078391|emb|CCA65590.1| Hypothetical protein R31.1c [Caenorhabditis elegans]
          Length = 3980

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/294 (9%), Positives = 97/294 (32%), Gaps = 20/294 (6%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
             +     A  K    +          +  +       +    +  +    ++++  + + 
Sbjct: 889  RKFDKLEADMKTNGGTQLKHINDIANDLISEGHGQSRKIEVRQHKINAMWDNLERLRKQR 948

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                   +R+        +        +++  R+ +     Q L +       L  K + 
Sbjct: 949  GVRLEATERVADFDTTCESAREWMLSKFEQLDRNPNDVKSLQNLERDLKP---LEDKIAA 1005

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
             E        +HP       +++A       EL+ L + L     E+     +   + + 
Sbjct: 1006 LEKLAAAVKKDHPEEAAAIERKIA-------ELRALHADLLRRAQEKMLLAEQTQGKEMF 1058

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK---EEIE 599
            E    +++  +++      +       ++ +  +  ++   L ++ +    +    +E+ 
Sbjct: 1059 ESALRDMIGWIEK--TRKVMMEDVHPVDVAEAEELLKKHYELGEQIKDKKYEVEYCQELG 1116

Query: 600  KQIAQVTAKGE--AEKTAILISI---LHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            +++ +   +     E+   L+S    L +++ +   I  Q+  ++ F + S R+
Sbjct: 1117 RRLLERNPRMSKVEEQLQNLVSEMASLRDLYRRRDTILKQQLDLQLFNRESERI 1170


>gi|303237611|ref|ZP_07324171.1| conserved hypothetical protein YmdA/YtgF [Prevotella disiens
           FB035-09AN]
 gi|302482063|gb|EFL45098.1| conserved hypothetical protein YmdA/YtgF [Prevotella disiens
           FB035-09AN]
          Length = 512

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            ++ +L +   +      E+  + L E+   E+ ++   +  +           I     
Sbjct: 22  AVFRYLITGIYKDTITKAEKEAEVLKEKKLLEVKEKFLNKKSELEKEVQQRNQKIQQNEN 81

Query: 577 GYQQ-ALALYKRFRLLSRQKEEIEKQIAQVTAKGE-AEKTAILISILHEVHI----QIHQ 630
             +Q    L +R   L+R+K+E+E+Q+ +V    +        +     +      ++  
Sbjct: 82  RLKQKETTLVQRQDDLNRRKQEVEQQLQRVENDKKLLALKEQELEKQKGLERAKLEELSG 141

Query: 631 IESQEA 636
           + ++EA
Sbjct: 142 LSAEEA 147


>gi|302338507|ref|YP_003803713.1| hypothetical protein Spirs_1997 [Spirochaeta smaragdinae DSM 11293]
 gi|301635692|gb|ADK81119.1| hypothetical protein Spirs_1997 [Spirochaeta smaragdinae DSM 11293]
          Length = 757

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 72/226 (31%), Gaps = 26/226 (11%)

Query: 425 SQAIRDR---LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
            Q ++++   LQ+L +    + +   +      + + ++     L  S  +  +  +   
Sbjct: 311 LQDLKEKEAALQELVKSGRGDVAAQAKEALSGIQGQIERTEQLILASSRFLSAQ--EAIR 368

Query: 482 LREAALLLTLI------------NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           L E   L                N  A+ +   +EL  +  +  +L+ L   +       
Sbjct: 369 LEEKRSLEAAAKLAAVREKAAKDNETALSELAKRELEAMEPNEKQLRLLQDEIDKWAA-- 426

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                  +           LL  L  +         T  +  ++    ++Q         
Sbjct: 427 --VRDAGVAAGQDMAEVQRLLNDLIDERNRKLSEGKTNWSQPLEGLSEWEQEYKDILNEA 484

Query: 590 LLSRQK--EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            L RQ+   + E ++A++         + L + L E+ +Q+   + 
Sbjct: 485 SLDRQQMERDEEARLAEIRESFGK---SQLQARLDEIRLQVDAAKQ 527


>gi|281604202|ref|NP_001094032.1| hook homolog 2 [Rattus norvegicus]
          Length = 719

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 87/275 (31%), Gaps = 35/275 (12%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI----TEHSGYGRYWK 451
           +  DE  +     +     +   + R    Q +R +++QL ++                +
Sbjct: 295 DEMDELRQSSERARQLEATLNSCRRRLGELQELRRQVRQLEERNAGHAERTRQLEDELRR 354

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT--LINHPAILQEQYQEL---- 505
             +     +   +++ Q   ++G+  ++    E  L     L     +L ++ + L    
Sbjct: 355 AGSLRAQLEAQRRQVRQMQELQGQWQEEAMKAEKWLFECQNLEEKCDLLTKEKERLLTER 414

Query: 506 ADIRYDNNELQ--KLWSFLFSDFVEQKYFLP---EEIHQRLCERGFGELLKQLDRQVRDA 560
             +R  N EL+  +L     +         P   E +   +      E L +L  + +  
Sbjct: 415 DSLRETNEELRCAQLQPRGLNQAGLSLDPTPSGLENLAAEILPAELRETLVRLQLENKRL 474

Query: 561 GLWSATTEANIVDVRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKG 609
               A       ++++  ++A                +   L  Q EE++K + +   K 
Sbjct: 475 CQQEAADRERQEELQRHLEEANRARHGLEAQQRLNQQQLSELRAQVEELQKALQEQGGKT 534

Query: 610 E---------AEKTAILISILHEVHIQIHQIESQE 635
           +          +    L     E+  +   IE  E
Sbjct: 535 DDPTLLKRKLEDHLQKLHEADLELQRKREYIEELE 569


>gi|238881151|gb|EEQ44789.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 339

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 70/210 (33%), Gaps = 15/210 (7%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           +RL+      +   +   +       +R  +     ++  +     L+ K     A L  
Sbjct: 73  ERLK-SVNPGLANVNPSSKTPLTPVNNRTYQNVRNSMINENFANPDLTLKYESEIAELQR 131

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            L       +E+ + L +      E +     L +   E      + I + L      + 
Sbjct: 132 AL-------REKEKRLENFNNQREEWRAAMDELVAVQQEGIQVYEDRI-EELENENKAQ- 182

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
                 ++ +A        + I ++ Q     L+       +   ++EIE+   ++ ++ 
Sbjct: 183 ----QEKLDNANASLTAANSKIKELEQSIDNLLSEKVNDVQIDDSRKEIEQLKRELESRP 238

Query: 610 EAEKTAILISILHEVHI-QIHQIESQEAMI 638
             E    L + L E+      Q+  ++A+I
Sbjct: 239 RLEDLEELQNSLDELESIYQQQLNEKDAII 268


>gi|149631820|ref|XP_001509080.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform 3
            [Ornithorhynchus anatinus]
          Length = 1978

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 89/294 (30%), Gaps = 19/294 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                    +   +KL V +        K   + +     + +  LE H+      + D K
Sbjct: 1324 QDTQELLQEETRQKLNVSTKLRQLEDEKNSLQEQLDEETEAKQNLERHVSTLNVQLSDSK 1383

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-------- 471
             +     +  + L++  +K   E  G  + +++ A   D+   ++  +Q  L        
Sbjct: 1384 KKLQDLASTVENLEEGKKKLQKEIEGLTQQFEEKAASYDKLEKTKNRLQQELDDLVVDLD 1443

Query: 472  VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE----LQKLWSFLFSDFV 527
             + +L      ++      L     I  +   E      +  E       L   L     
Sbjct: 1444 NQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKALSLARALEEALE 1503

Query: 528  EQKYFLPEE--IHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
             ++        +   + +        G+ + +L++  R         +  + ++    Q 
Sbjct: 1504 SKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQA 1563

Query: 581  ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                  R  +  +  +   ++  Q   +   EK   L   LHE+  ++     Q
Sbjct: 1564 TEDAKLRLEVNMQALKGQFERDLQARDEQNEEKRRQLQKQLHELETELEDERKQ 1617


>gi|109118866|ref|XP_001110299.1| PREDICTED: caspase recruitment domain-containing protein 14 isoform
           1 [Macaca mulatta]
          Length = 740

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 47/399 (11%), Positives = 123/399 (30%), Gaps = 48/399 (12%)

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           E   D++   +  +   +          Q ++L +L    VL           A   +DL
Sbjct: 17  ETLWDMMESHRHRIVRCICPSRLTPYLRQAKVLCQLDEEEVLHSPRLTNSAMRAGHLLDL 76

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397
           +      G    F+   +  +PD +    G          S  +              + 
Sbjct: 77  LKTRGKNGAIA-FLESLKFHNPDVYTLVTGLQPDVDFSNFSGLMETSKLTECLAGAIGSL 135

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            +E  + +   +  +   +  + R   ++   + L QL   +         ++ +  R +
Sbjct: 136 QEELNQEKGQKEVLLRRCQQLQERLGLAETRAEGLHQLEADHSRMKREVSTHFHEVLRLK 195

Query: 458 DQKGPSQRLMQSSLVKGKLSK---KPSLREAALLLTLIN--------HPAILQEQYQELA 506
           D+         S+L + +L+    +    E  LL   +            + ++  +  +
Sbjct: 196 DEMLSLSLHYSSALQEKELAASRCRSLQEELYLLRQELQRVNMVSSCELELQEQSLRTAS 255

Query: 507 DIRYDNNELQKLWSF---------------LFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           D    + EL +L                  +    +++     +E+ +R+       L +
Sbjct: 256 DQESGDEELNRLKEENEKLRSLTFSLAEKDILEQSLDEARGSRQELVERIHS-----LRE 310

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           +     R    +    E  ++  ++         ++   L  Q  E++K+  Q  +  ++
Sbjct: 311 RAVAAERQREQYWEEKEQTLLQFQKSKMACQLYREKVNALQAQVCELQKERDQAYSARDS 370

Query: 612 EKTA----------------ILISILHEVHIQIHQIESQ 634
            +                   L   + E+  Q+ Q++++
Sbjct: 371 AQREISQSLVEKDSLRRQVFELTDQVCELRTQLRQLQAE 409


>gi|157869463|ref|XP_001683283.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68224167|emb|CAJ04669.1| hypothetical protein LMJF_22_1320 [Leishmania major strain Friedlin]
          Length = 2046

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 88/275 (32%), Gaps = 16/275 (5%)

Query: 368  KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
            +    +    +  +      R+ E    +  ++  E E H ++      D   R      
Sbjct: 1518 REQLREAEEHARDVEAQQSDRDAEVA--DLREQLREAEEHARDVEAQQSD---RDAEVAD 1572

Query: 428  IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            +R++L++  ++     +       + A  R+Q   ++   +    +              
Sbjct: 1573 LREQLREAEERARDVEAQQSDRDAEVADLREQLREAEERARDVEAQQSDRDAEVADLREQ 1632

Query: 488  LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
            L     H    ++   + +D    + E+  L   L       +    ++  +        
Sbjct: 1633 LREAEEH---ARDVEAQQSD---RDAEVADLREQLREAEEHARDVEAQQSDRDAEIDRVK 1686

Query: 548  ELLKQLDRQVRDAGLW----SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            ELL    R+   +G          E    ++R   +Q      R   L  +  ++ +Q+ 
Sbjct: 1687 ELLSSSMREAASSGEMLGALEEQREEAAREMRGLREQLAVAQVRQEALDAEVADLREQLR 1746

Query: 604  QVTAKGEAEKTAILISILHEVHI-QIHQIESQEAM 637
            +  A     +  IL++   E+    + +   +EA+
Sbjct: 1747 EAEADVARGEGVILLTTSEELQRADLWRRMLEEAL 1781


>gi|118369208|ref|XP_001017809.1| hypothetical protein TTHERM_00439120 [Tetrahymena thermophila]
 gi|89299576|gb|EAR97564.1| hypothetical protein TTHERM_00439120 [Tetrahymena thermophila
           SB210]
          Length = 2071

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 70/233 (30%), Gaps = 16/233 (6%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            +        E  + +  L+   + +   + +    +AI DRL  L +            
Sbjct: 318 YKKVVNAALQELQKKQKELEKSQDLMPLVERQNIRIKAIDDRLNDLQENLSQRIQDMTNQ 377

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
              N     + G  Q L  +              E  L      + A+   + Q++    
Sbjct: 378 LLNNQGSNKKGGEIQVLTNNVDPHK-----LCQIEGDL------NRALEDLKKQQIDIDD 426

Query: 510 YDNNELQKLWSFLFSDFVEQ--KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
             NN L KL +   S +         P  I       G  ELL Q  +Q+ +        
Sbjct: 427 IKNNVLIKLQNIDLSVYEAGMNNGNRPSAIQNAGSVHGMQELLDQFRQQMNEMQNMRDRN 486

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
             +  D  +     +    +        +++EK++ ++  + +    A  +  
Sbjct: 487 GGDDEDKIRKLISDVKDINKK---MESIKDLEKRLQRIFKEFDIGTMAKQLKQ 536


>gi|118399571|ref|XP_001032110.1| hypothetical protein TTHERM_00691450 [Tetrahymena thermophila]
 gi|89286448|gb|EAR84447.1| hypothetical protein TTHERM_00691450 [Tetrahymena thermophila
           SB210]
          Length = 1329

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/278 (7%), Positives = 86/278 (30%), Gaps = 13/278 (4%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                 F+      +  V    +    +       +  +L+  + + +    D+ +    
Sbjct: 524 REKYNNFQHQQQNEITSVKSNIENYINSIKLLQQSQDEQLKTQIISKVQEQNDKIIAA-- 581

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              ++   +   +  I +   +   + K   +              ++    S   ++ E
Sbjct: 582 VNNLKQDYETSLKDLIRKQEFFQNDFTKFKSNFSTNDQKIEQNNQMIISQIKSDLDAILE 641

Query: 485 AALLLTLINHPAILQEQYQELADIRY-----DNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             L + L  +   L++   +L+ I       D+   Q          ++ +    ++   
Sbjct: 642 RQLSIQLAENNNALKQVVSDLSSIDLFIKKQDHELQQIKQIQTQQQEIQSEQNQLQKTSD 701

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK---- 595
           +L ++ +  L   +    ++        +    +  +     +    +    ++Q     
Sbjct: 702 KLYQQFYETLQSNITAIHQNLNHQINNNKILFQEQMKILTTDIKNLSQNSEENKQILQND 761

Query: 596 -EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            +E++  I     + +      ++  + +++ Q+ +++
Sbjct: 762 NKEVKNLIKTYNLELKTSM-EEILIQIKDLNKQMQELQ 798


>gi|71084020|ref|YP_266740.1| hypothetical protein SAR11_1332 [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71063133|gb|AAZ22136.1| unknown [Candidatus Pelagibacter ubique HTCC1062]
          Length = 402

 Score = 39.5 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 97/263 (36%), Gaps = 8/263 (3%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           EK+I +   +     K E++         + E E  ++     IK++KL+  + +  R R
Sbjct: 115 EKIIKQQQQIERKKIKLESQRIKAEEQKLKDEEEEKVRQDDLKIKEEKLKLEFFEKQRIR 174

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            +Q   K   +        K     +  K   +RL    + K K + +  + E   L   
Sbjct: 175 QEQQKAKIENDKLMALEKQKAREAKQKIKDEEERLKNIEIDKQKKNMQKLIEEEHKLNYQ 234

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
                 +++  +++        E++++         E      +E   RL E+   E L 
Sbjct: 235 KQKLEEIEQSIKKI--------EIERIREKEIKILKEADELREKEKQLRLKEQLEIEELN 286

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           +L     +        +     +R    +   + +   L  ++ ++ E++I +   K + 
Sbjct: 287 ELRLNELNQRKIQEELQLKEEKIRLENLREQKIIQARILEEKRIKDEEERIKEWERKFDE 346

Query: 612 EKTAILISILHEVHIQIHQIESQ 634
           E+ A    ++ + + Q+ + + Q
Sbjct: 347 EQIAKEEELIKKFNDQLIKEKEQ 369


>gi|332254603|ref|XP_003276419.1| PREDICTED: syncoilin [Nomascus leucogenys]
          Length = 478

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QA 581
            +   +      E++ Q+L           L    R +  +      +  D+ + Y+ Q 
Sbjct: 285 LAQLRDAYQKQKEQLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQL 344

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           L L +R    ++  ++ + +I ++      E    L +   ++ +Q   +E Q A++
Sbjct: 345 LQLLERKEAGTKALQKTQAEIQEM-----KEALRPLQAEARQLRLQNRNLEDQIALV 396


>gi|332028026|gb|EGI68077.1| Golgin subfamily A member 2 [Acromyrmex echinatior]
          Length = 919

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 87/278 (31%), Gaps = 22/278 (7%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY--YSQAIRDRLQQLFQKYI 440
           D     E+++++    +++          +N+ KD+  R Y  Y + +  +  +LF +  
Sbjct: 403 DTSQTLESQHQTVTVLEQQLAQMRETLKLVNNEKDEASRQYQNYVRQLDAQQAKLFNEVE 462

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
           +          +   +  +    ++ +Q    K +           +   + N   +  +
Sbjct: 463 SGKKIISDLESREKSYIQRLSDLEQQLQHEREKSEAILPSQDHNDEITNLMKNIEDLTAQ 522

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLPEEIHQRLCERGFGE-----LLKQLD 554
                  +   + E++ L   +      +       ++ Q L     G        +QL 
Sbjct: 523 HKNLHIALSERDAEIEMLTKEIQELRDMKDDGNDAAKLVQALESEKLGASRAVSQNQQLK 582

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-----------LSRQKEEIEKQIA 603
            Q+ +      T     +D+ +  Q    + ++              L  + +E E  + 
Sbjct: 583 EQLTEMENAFVTLSNAKLDLTEQLQAERNIGRKLNARLNNVEMEMDNLKEKLKEKETLLI 642

Query: 604 QVTAKGEA-EKTAILISILHEVHIQIHQIES--QEAMI 638
           ++  +     + A  +            ++   Q A+I
Sbjct: 643 ELEKEKLQNAQIADQMQHYQAQSHHARTLQQELQNALI 680


>gi|328861292|gb|EGG10396.1| hypothetical protein MELLADRAFT_94374 [Melampsora larici-populina
           98AG31]
          Length = 1222

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 3/121 (2%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
              +             +    L E     + ++  +Q+ DA       +A I       
Sbjct: 159 RQDIEEQERALAELQKAQELLALRESEIR-IKEEAFQQMLDAERIRIEEDARIAQEAADR 217

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE-AM 637
             + AL K       + EEIE++  Q   +   E+   +     E+  +  +IE +E AM
Sbjct: 218 AASEALLKAEAEQQAKSEEIERE-RQAHQREIEERQREIHERQREMQDRQREIEEKEQAM 276

Query: 638 I 638
           I
Sbjct: 277 I 277


>gi|326924051|ref|XP_003208246.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation
           factor 3 subunit A-like [Meleagris gallopavo]
          Length = 1359

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E+I  +L        L +    ++   L     E + + V    + +   ++R     + 
Sbjct: 509 EQIRNQLT--AMSSALAKALAVIKPPHLLQEKEEQHQLAVTAFLKNSRKEHQRILARRQT 566

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 567 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 608


>gi|225685108|gb|EEH23392.1| dna repair protein rad18 [Paracoccidioides brasiliensis Pb03]
          Length = 1161

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/267 (9%), Positives = 80/267 (29%), Gaps = 21/267 (7%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
           P+  +      +  S ++P E+ +  +         +D +L          +L     + 
Sbjct: 255 PMNVLSQDMARQFLSNSSPSEKYKFFLKGVQLEQLDQDYRLLEESIDQTEAKLSIHLDQI 314

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
                   +   K A     +    R+         +  +   ++        +    ++
Sbjct: 315 KELEVARNQTRAKLALSDKNETIRARVRNLRAQMAWVQVEEQEKQRH------SCDDQIE 368

Query: 500 EQYQELADIRYDNNELQKLWS-------FLFSDFVEQK-YFLPEEIHQRLCERGFGELLK 551
           +  +++A++  +  E  +++         +     E K     +E   +  +    E +K
Sbjct: 369 QATRKIANLEAEVAEADEVFQEADREHNAILEAVREAKSELKAQEDRGKAADERLDETVK 428

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-----RQKEEIEKQIAQVT 606
           +               +A    ++    +     +R   L      R+  E+E++ A+  
Sbjct: 429 ERHELQAQQRTIRECLKAAESTIKDTQSKIDEEKQRLEDLDGGSHARRIAELEQKKAEAE 488

Query: 607 AKGEAEKTAILISILHEVHIQIHQIES 633
              +  +       L  +  ++ + E 
Sbjct: 489 EARD--RHHAHARDLDRLQDELTRAEQ 513


>gi|241166981|ref|XP_002409961.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215494695|gb|EEC04336.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 320

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA----LALYKRF 588
             +EI +RL E      L+ L+R+           E    D+R   +        L ++ 
Sbjct: 183 TAQEIQRRLEEIEVS--LRALERRGVLIERALRGEEDEDEDLRTDEKDLTQVLFRLMRQK 240

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             LSR+++E+  ++  +  +    K    +     V
Sbjct: 241 NKLSREEQELLIRVRDLELENHHSKLQQEMRERMAV 276


>gi|221056148|ref|XP_002259212.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193809283|emb|CAQ39985.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 1400

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 90/277 (32%), Gaps = 10/277 (3%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                 +      +++ +   +       + +     +E  E E +L+  I + + +  R
Sbjct: 586 IRMYKEREKKCLHMLKEIEEKERRRSASFKKKEKMYQEEILEREKNLQLEITNREKELER 645

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                 +  R+++   + +    G  +   K      ++  S    +    + K  ++  
Sbjct: 646 MMREHEVSLRMKEEELEVLLGKEGALKEELKKIESEAERKVSMLKDEFERRRTKEMEELK 705

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            ++  L         +++E   EL      N     L   L +  +     L  E+   +
Sbjct: 706 NQQRELTK-----GKMVEEVRGEL-RDELINEVTNDLRGELKNQVMTD---LRGELINEV 756

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLSRQKEEIEK 600
                GEL  ++  ++R         E  I    +         K      + + E+ ++
Sbjct: 757 MNDLRGELTNEVMNELRTELKDQVMEELRIQVKDEVAGDLEKAKKIAEDNFNSKLEKYKE 816

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           ++ +   +          + +  +  Q+ +++++E +
Sbjct: 817 KMEENKNEFINNLIIEKNNEMEALRCQLEKMKNEEIL 853


>gi|123458287|ref|XP_001316562.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121899272|gb|EAY04339.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2345

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLSK 478
            +      + + +++L        S   +Y       +++   ++ L   +  K    + 
Sbjct: 150 EKDQIQGKLNETMKELDNVKQQNDSLNKKYDTDVENLKNELEATKALNGQNEQKLKDANA 209

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           + +  E  L+     +     +  QEL + + DN+   K         +E +     +  
Sbjct: 210 QKTAAEQKLVQLQQQYEDQTAQLKQELENNKRDNDTNAK-KQATLQKDLENQLKNANDEI 268

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-- 596
           + L +R      ++ +   ++A   +   +    +V +  +    L  +   L ++ +  
Sbjct: 269 ETLEQRNKDLTAQKQNNDNKNASRINELED----EVEKLTKDCETLKIKNGSLKKKLQAA 324

Query: 597 --------EIEKQIAQVTA-------KGEAEKTAILISILHEVHIQIHQIESQEA 636
                   E  KQ+            K   +K     +    +H QI Q++ Q A
Sbjct: 325 SQDNMNKDEAMKQLRDENEQKMKEMNKQNKQKEQETNAEFQNLHDQIEQLQKQLA 379


>gi|119575204|gb|EAW54817.1| golgi autoantigen, golgin subfamily a, 3, isoform CRA_a [Homo
           sapiens]
          Length = 1498

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 528 EQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           E      E    ++ E       +L ++L+    +        ++     +Q  Q  L L
Sbjct: 646 EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTL 705

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGE-----AEKTAILISILHEVHIQIHQIESQEAMIE 639
            +R + L   ++E    + Q+T   E      +    L +   E+  ++ +++ + A  E
Sbjct: 706 LQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASRE 765


>gi|115438751|ref|NP_001043655.1| Os01g0633200 [Oryza sativa Japonica Group]
 gi|6650526|gb|AAF21887.1|AF101045_2 putative transcription factor X1 [Oryza sativa Japonica Group]
 gi|20161810|dbj|BAB90725.1| putative X1 [Oryza sativa Japonica Group]
 gi|113533186|dbj|BAF05569.1| Os01g0633200 [Oryza sativa Japonica Group]
 gi|215697249|dbj|BAG91243.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222618909|gb|EEE55041.1| hypothetical protein OsJ_02725 [Oryza sativa Japonica Group]
          Length = 629

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/323 (8%), Positives = 95/323 (29%), Gaps = 10/323 (3%)

Query: 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382
           G+    + +      ++            ++  G+D   F        +           
Sbjct: 140 GNHLKEQLSRFCPLKIIPLWNFRGHSGNAIVEFGKDWHGFRNALAFEDYFGKEGYGRRDW 199

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
                + +    +    E       + + +    D K           +  +L      +
Sbjct: 200 KEKQNQGSNLFGWVARAEDHTSPGLIGDHLRKNGDLKTINDLENEGARKTDKLVANLANQ 259

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVK------GKLSKKPSLREAALLLTLINHPA 496
                R+ ++     +++  S   M     +       ++ K   L +      +  +  
Sbjct: 260 IEVKNRHLQELEVTYNERTTSLEKMMGQREQLLQKYNEEIRKMQQLAQRHSQKIIDENQK 319

Query: 497 ILQEQYQELADIRYDNNELQKLWSF--LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
           +  E   +++++   + EL ++ +        ++Q+          L      +  ++ D
Sbjct: 320 LRSELESKMSELNTRSKELDEIAAKSDYDRRIIDQEKQKNAIKSSHLKLATLEQ--ERAD 377

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
             V          +   V      +Q +   ++  L  +Q +   + +  +    ++   
Sbjct: 378 ENVLKLVREHKREKEAAVKKILKLEQQVDAKQKLELDIQQLKGKLEVMKHMPGDEDSALK 437

Query: 615 AILISILHEVHIQIHQIESQEAM 637
             +  +  E+  ++ ++++ E++
Sbjct: 438 NKIDELSEELQEKMDELDAMESL 460


>gi|30089940|ref|NP_005886.2| Golgin subfamily A member 3 isoform 1 [Homo sapiens]
 gi|32470610|sp|Q08378|GOGA3_HUMAN RecName: Full=Golgin subfamily A member 3; AltName: Full=Golgi
           complex-associated protein of 170 kDa; Short=GCP170;
           AltName: Full=Golgin-160
          Length = 1498

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 528 EQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           E      E    ++ E       +L ++L+    +        ++     +Q  Q  L L
Sbjct: 646 EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTL 705

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGE-----AEKTAILISILHEVHIQIHQIESQEAMIE 639
            +R + L   ++E    + Q+T   E      +    L +   E+  ++ +++ + A  E
Sbjct: 706 LQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASRE 765


>gi|326666553|ref|XP_692779.5| PREDICTED: ras and EF-hand domain-containing protein [Danio rerio]
          Length = 773

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/205 (11%), Positives = 66/205 (32%), Gaps = 15/205 (7%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           L    +K           +      + ++   +R    S ++ K     +  +       
Sbjct: 175 LWAQLRKDEPHLLSNFEEFLSRVTFQIKEAQHERKEMESALRRKAVTHDTEIQRL----- 229

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
             +  + Q+   E       ++E  ++ S      +  K    E++ Q+  +R      +
Sbjct: 230 --YEEMEQQIINEKDRANLKDSESLQIRSQDLQQLLRGKEQELEQLFQK--QRRLERQCR 285

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            L  + +++ L +   + N  ++ +  +          L   Q   +++Q +++  + E 
Sbjct: 286 DLHSEQQESRLENVKLKMNNEELSRDLEHTCEELV---LAQEQLAILQEQASRLQEEREM 342

Query: 612 EKT---AILISILHEVHIQIHQIES 633
           E       L      +  Q+  +  
Sbjct: 343 EMYRVTEGLQREKQSLMKQLDLLRE 367


>gi|325570278|ref|ZP_08146144.1| hypothetical protein HMPREF9087_2433 [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156761|gb|EGC68935.1| hypothetical protein HMPREF9087_2433 [Enterococcus casseliflavus
           ATCC 12755]
          Length = 399

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 45/126 (35%), Gaps = 5/126 (3%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           E ++L + L      +K    EE   ++        ++QL+ ++          + N   
Sbjct: 189 EAKELKASLVE--ANKKVKNLEEQLTKVDTEKLEAKIQQLEAKLAVQQEKEQKEKQNYEK 246

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            R  +       +  + L     ++++Q+A+          +     + E+  +I  +  
Sbjct: 247 ERAEW---TLKRQEIQQLQEVIADLKQQLAEKEELAAKVSASESNEEVAELQAKIEALRE 303

Query: 634 QEAMIE 639
           + A ++
Sbjct: 304 ENATLQ 309


>gi|331243064|ref|XP_003334176.1| hypothetical protein PGTG_15413 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309313166|gb|EFP89757.1| hypothetical protein PGTG_15413 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1111

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/276 (10%), Positives = 88/276 (31%), Gaps = 18/276 (6%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           +  R    +A   L      + +     E ++R     DE  ++     + ++ IK    
Sbjct: 425 NMYRDKSASAMLTLEKREKEVDE--LNAELDDRDAIFNDEVQKITRQYNSELDAIK--AE 480

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  + Q + +R  Q+ +             + +   R+ +   +   +   +   + +  
Sbjct: 481 RDEFQQVLDEREDQIAELSDQLREVINLQEETDKSLRETRSKLKEKDKDYNL---VLQDL 537

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              +  L      +  +  +  ++   I   N EL +L     +     +     ++ Q+
Sbjct: 538 EAAQTDLKEIGAGNRELAADVNEKEQQINELNAELDELEQEASNRATVHEQV-VAKLKQK 596

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--FRLLSRQKEEI 598
           L           +  +   + L     +   + +RQ   +     +    R L R+ +++
Sbjct: 597 LNHTKSELTELSIQHESSLSELKFLQDKHEELQLRQAELEERRKKECDLKRRLERELDDL 656

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           E+++     + +          +     +  ++ + 
Sbjct: 657 ERELRGTREEMDL--------QIIASKKEKRELHAS 684


>gi|297274968|ref|XP_001098799.2| PREDICTED: ralA-binding protein 1 isoform 2 [Macaca mulatta]
          Length = 668

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 76/256 (29%), Gaps = 35/256 (13%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-----QAIRDRLQQLFQKYI---- 440
            +  +             L      IK++  R  +      + ++  ++ L ++      
Sbjct: 386 LKQVTKPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGIKDLSKEERLWEV 445

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                  +   + A+ ++ +    + + S   +    ++ +  E  + + L     IL E
Sbjct: 446 QRILTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVINILLAQENEILTE 505

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           Q + LA  ++       L   + S                  +     L  ++       
Sbjct: 506 QEELLAMEQF-------LRRQIAS-----------------EKEEIERLRAEIAEIQSRQ 541

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILI 618
               + TE    +     +    L      L RQ EE+E +   +      E E    L 
Sbjct: 542 QHGRSETEEYSSESESESEDEEELQIILEDLQRQNEELEIKNNHLNQAIHEEREAIIELR 601

Query: 619 SILHEVHIQIHQIESQ 634
             L  + +Q  + E Q
Sbjct: 602 VQLRLLQMQRAKAEQQ 617


>gi|269925864|ref|YP_003322487.1| bacterial peptide chain release factor 2 (bRF- 2) [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789524|gb|ACZ41665.1| bacterial peptide chain release factor 2 (bRF- 2) [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 372

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 39/115 (33%), Gaps = 7/115 (6%)

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
            ++L   + +              + L        +++L+++   + LW+   EA    V
Sbjct: 2   YEELKDKIDNLRER-----ISTFKEHLDLENKRLEIEKLEQRAASSELWADPAEA--QKV 54

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +         + +  + R+ E+ E  +     +  A       S +  +  Q++
Sbjct: 55  MKNLNDLKDQLEVWSKIERRLEDAEVLLDLAYEEDSASDFHEAASQIRALENQLN 109


>gi|224074811|ref|XP_002187186.1| PREDICTED: similar to myosin, heavy chain 1, skeletal muscle, adult
            [Taeniopygia guttata]
          Length = 1853

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 83/277 (29%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  +L   +    +       +      ELE   K     ++D +      
Sbjct: 1266 EEEQEAKGELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1325

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1326 NAKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQKNFDKILAEWKQKYEETQAEL 1385

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+  S L     E         
Sbjct: 1386 EASQKESRSLSTELFKMKNAYEESLDHLETMKRENKNLQQEISDLTEQIAEGGK------ 1439

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +A + +     +       R   L  +  +
Sbjct: 1440 -----------AIHELEKVKKQIEQEKSEIQAALEEAEASLEHEEGKILR---LQLELNQ 1485

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1486 VKSEIDRKIAEKDEEIEQMKRNHLRVVDSMQSTLDAE 1522



 Score = 38.3 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/267 (8%), Positives = 79/267 (29%), Gaps = 15/267 (5%)

Query: 376  VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             +    +D     + E       +    ++         I+ +       + +   L ++
Sbjct: 1484 NQVKSEIDRKIAEKDEEIEQMKRNHLRVVDSMQSTLDAEIRSRNEALRLKKKMEGDLNEI 1543

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
              +    +       K     +     +Q  +  +L       +  L+E   +  +    
Sbjct: 1544 EIQLSHANRQAAEAQKNLRNTQGVLKDTQIHLDDAL-----RSQEDLKEQ--VAMVERRA 1596

Query: 496  AILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             +LQ + +EL          +K+    L       +    +       ++     + Q+ 
Sbjct: 1597 NLLQAEIEELRAALEQTERSRKVAEQELLDASERVQLLHSQNTSLINTKKKLETDIAQIQ 1656

Query: 555  RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKGE 610
             ++ D    +   E                 K+ +     L R K+ +++ +  +  + +
Sbjct: 1657 GEMEDTIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLDQTVKDLQHRLD 1716

Query: 611  AEKTAIL---ISILHEVHIQIHQIESQ 634
              +   L      + ++  ++ ++E +
Sbjct: 1717 EAEQLALKGGKKQIQKLEARVRELEGE 1743


>gi|189523351|ref|XP_692550.3| PREDICTED: hypothetical protein LOC564101 [Danio rerio]
          Length = 2775

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 90/282 (31%), Gaps = 9/282 (3%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R       ++L+  SL  ++    R     +    D+               K ++    
Sbjct: 1630 RAQNTEEEKQLLKRSLSQIEREKSRLETQLTDEKMDKEKLKARLEDQDKEVTKLKEKMNE 1689

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
              +  R   Q L    +       R        +  K    ++ +     G       + 
Sbjct: 1690 ILEEERKLSQLLQNSRVEAQMLESRAENIEVEKQQLKRSLTQIEEEKRHLGTQLTDEKMD 1749

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            +  L   + +    + +  ++L+++     E +KL   L +  VE         +    +
Sbjct: 1750 KERLRAWVEDQATEVTKLKEKLSEMI---EEERKLSQLLQNSRVEAHILESRTENIEEEK 1806

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +     L Q++++ R         + +   +R   +       + +    +  E E++++
Sbjct: 1807 QQLTRSLTQIEKEKRHLETQLTDEKMDKERLRARLKDQATEVTKLKEKLNEMIEEERKLS 1866

Query: 604  QV------TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            Q+       A+    +    I    ++   + Q+E ++ ++E
Sbjct: 1867 QLLQNSRVEAQMLESRAENTIEEKQQLKRVLSQVEEEKRLLE 1908


>gi|149631818|ref|XP_001508844.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform 1
            [Ornithorhynchus anatinus]
          Length = 1972

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 89/294 (30%), Gaps = 19/294 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                    +   +KL V +        K   + +     + +  LE H+      + D K
Sbjct: 1318 QDTQELLQEETRQKLNVSTKLRQLEDEKNSLQEQLDEETEAKQNLERHVSTLNVQLSDSK 1377

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-------- 471
             +     +  + L++  +K   E  G  + +++ A   D+   ++  +Q  L        
Sbjct: 1378 KKLQDLASTVENLEEGKKKLQKEIEGLTQQFEEKAASYDKLEKTKNRLQQELDDLVVDLD 1437

Query: 472  VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE----LQKLWSFLFSDFV 527
             + +L      ++      L     I  +   E      +  E       L   L     
Sbjct: 1438 NQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKALSLARALEEALE 1497

Query: 528  EQKYFLPEE--IHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
             ++        +   + +        G+ + +L++  R         +  + ++    Q 
Sbjct: 1498 SKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQA 1557

Query: 581  ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                  R  +  +  +   ++  Q   +   EK   L   LHE+  ++     Q
Sbjct: 1558 TEDAKLRLEVNMQALKGQFERDLQARDEQNEEKRRQLQKQLHELETELEDERKQ 1611


>gi|115666741|ref|XP_001189059.1| PREDICTED: similar to mKIAA0373 protein, partial
           [Strongylocentrotus purpuratus]
 gi|115696931|ref|XP_799269.2| PREDICTED: similar to mKIAA0373 protein, partial
           [Strongylocentrotus purpuratus]
          Length = 1160

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 62/195 (31%), Gaps = 14/195 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                  L         +        +   R      P +   + S    +L       E
Sbjct: 130 LDEKAQSLYHCQVDSRNKARHLRGTVQGLRRQFSGAVPLEEQEKFSKAMIQLRLDKERME 189

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--RLC 542
             +   ++ H    ++  ++ AD+   ++ LQ+L   L       K        Q  RL 
Sbjct: 190 KEM--KVLKHE--REKVSEQFADLELKHSGLQELMQTLKDSRGAAKVAEWHAKMQETRLQ 245

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDV--------RQGYQQALALYKRFRLLSRQ 594
           +      + +L +QV+       T E  ++ +        RQ  ++ L   +R   L R 
Sbjct: 246 DMKLNRQITRLQQQVKYFDNMVTTHEQTVMSLEQENVHINRQAEERQLLWEQREAELERM 305

Query: 595 KEEIEKQIAQVTAKG 609
            + +E+Q  ++    
Sbjct: 306 IDNLERQQREIADAA 320


>gi|115390034|ref|XP_001212522.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114194918|gb|EAU36618.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1982

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 2/121 (1%)

Query: 518 LWSFLFSDFVEQKYFLPE-EIHQRLCERGFGELLKQLDRQVRDAGLWSATT-EANIVDVR 575
           L   L     + K  + E  + +   E    E L+++ R+  D      T     I    
Sbjct: 498 LRQQLRDLSAQIKVLVLEVAVLKEGEENYDREELEKIARKEIDESAADLTPTGRFISQNL 557

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             ++    L ++   L R   E+  ++    A+ +          L E+ I++     + 
Sbjct: 558 MAFKDLHELQEQNITLRRMLRELGDKMEGAEAREKDAVRQQEQEELKELRIRVQTYRDEI 617

Query: 636 A 636
           A
Sbjct: 618 A 618



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 72/219 (32%), Gaps = 11/219 (5%)

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             +    Q +  R++++  +  + ++   R   + +    +    +  +++ + + K   +
Sbjct: 1022 EKDKRIQDLEKRIEEISSELSSTNNELSRMRDEQSEASRRLEEQKSELEAEIKRLKDDNE 1081

Query: 480  PSLREAAL----LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +  A      L        I Q   Q        + E       L +   E      E
Sbjct: 1082 RHVAAAQFHQDDLKA---QAEIAQNAQQNYESELLKHAEA---AQNLQNVRNEANQLKLE 1135

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG-YQQALALYKRFRLLSRQ 594
             +  R         L + +   ++      T  +++   R+    Q   L+ +   ++ Q
Sbjct: 1136 IVELRAQTETSKSDLSKKEESWKELKERYETEISDLQKRREEVLHQNSLLHTQLENITNQ 1195

Query: 595  KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
               +++  A +    + E TA  +  L EV   + + + 
Sbjct: 1196 ISALQRDRASIPENEDEESTAPNLENLQEVIKFLRREKE 1234


>gi|109099323|ref|XP_001083474.1| PREDICTED: golgin subfamily A member 3 [Macaca mulatta]
          Length = 1506

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 528 EQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           E      E    ++ E       +L ++L+    +        ++     +Q  Q  L L
Sbjct: 654 EADMLDQEAAFLQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTL 713

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGE-----AEKTAILISILHEVHIQIHQIESQEAMIE 639
            +R + L   ++E    + Q+T   E      +    L +   E+  ++ +++ + A  E
Sbjct: 714 LQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASRE 773


>gi|52354715|gb|AAH82814.1| LOC494731 protein [Xenopus laevis]
          Length = 1489

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/316 (10%), Positives = 84/316 (26%), Gaps = 27/316 (8%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
             G D                +  +     +    + E       D +  +E       +
Sbjct: 394 RHGHDQYVVEMEAKMDQLRAFVEAA-DREKVELLNQLEEEKRKVEDLQFRVEEECITKGD 452

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
                         +   L  L  K + +         K A + D      + + S    
Sbjct: 453 LEVATVSEKSRIMDLEKDL-ALKTKEVGDLRQRLVESDKQAGNVDTSLSLLQELNSLQES 511

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN----ELQKLWSFLFSDFVEQ 529
                K    E   L   + H    +   +E+  ++        E + L   L +   ++
Sbjct: 512 IATMTKEHNHELDFLKNKLEHTE--ENHAKEIEGLKVSTEKISKENETLKVKL-NHANKE 568

Query: 530 KYFLPEEIHQRLCERGFGELLKQLD-----------RQVRDAGLWSATTEANIVDVRQGY 578
              + E    +L           ++                  + +      +   ++  
Sbjct: 569 NSDVIELWKSKLESAIHSHQQAMVELTLSFNKGTSAENSALIEIKAQIENLKLQHQKEIE 628

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE-------KTAILISILHEVHIQIHQI 631
           +Q  A  K   +  ++ E+++ ++ +   + E E               L E+   ++++
Sbjct: 629 RQKCAQDKELAVHLKEIEDLKSKLQEFNEEKEIELETMKSTLETAEEQHLIEMEDTLNKL 688

Query: 632 ESQEAMIEGFGKMSGR 647
              E  ++    + G+
Sbjct: 689 HDTEIKVKELEVLQGK 704


>gi|47211645|emb|CAF92169.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2310

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 84/283 (29%), Gaps = 19/283 (6%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                   +        +  P+    W +    +     +  AE                 
Sbjct: 1099 EMETKNQQVRISDFQPQIKPVFWESWLKIIYVQLLEEKNILAEQLQAETELFA------E 1152

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                   +  R Q+L +      S      ++N   +++K   Q  +Q    +    +  
Sbjct: 1153 AEEMRARLASRKQELEEILHDLESRLEEEEERNQTIQNEKKKMQSHIQDLEEQLDEEEAT 1212

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              +   L L  +   A +++  +++  +   N++  K    L     E    L EE  + 
Sbjct: 1213 RQK---LQLEKVTTEAKMKKLEEDVLLLEDQNSKFVKEKKLLEDRINEMSSLLAEEEEKA 1269

Query: 541  LCERGFG--------ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
                           +L ++L ++ +              +      Q      +   L 
Sbjct: 1270 KNLGKLKNKQEMMMVDLEERLKKEEKTRQELEKAKRKLDGETSDFQDQIAEFQTQMEELK 1329

Query: 593  RQK--EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             Q   +E E+Q+ Q   + EA +    +  L E+  Q+ +++ 
Sbjct: 1330 GQIGKKEEEQQLMQARNEDEATQKNNALKQLRELQAQLSELQE 1372


>gi|28210275|ref|NP_781219.1| clpB protein [Clostridium tetani E88]
 gi|54035838|sp|Q898C7|CLPB_CLOTE RecName: Full=Chaperone protein ClpB
 gi|28202711|gb|AAO35156.1| clpB protein [Clostridium tetani E88]
          Length = 865

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 11/120 (9%)

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
            ++   ++  K     +    +       L  +LD   R         EA   +     +
Sbjct: 383 RYITDRYLPDKAIDLIDEAGAMIRTEIDSLPTELDSIKRKIFQMEIEKEALAKEKDSRSK 442

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-----TAILISILHEVHIQIHQIESQ 634
           +      R   L ++   ++++  ++TAK E EK        L   L EV  Q+ + E +
Sbjct: 443 E------RLEDLEKELSNLKEKDKEMTAKYEKEKEQIINMRNLKQKLDEVKGQLEKAERE 496


>gi|71649321|ref|XP_813389.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70878266|gb|EAN91538.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 838

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 85/254 (33%), Gaps = 11/254 (4%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLF 436
           S+ + +   + +  N+     D   +    L + +  I  Q       +Q + D+L+  +
Sbjct: 412 SITMDEYTNQIQRSNQLQQENDTLRQQLQQLSDDMETINSQLREAAADNQNLSDQLRAKY 471

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           ++++  ++     +++N    ++             + +     + + A  L  L     
Sbjct: 472 EEFVKANNTIQSLYRQNETQENELQQKNIENAKQAEELEKLTIENEKLADELEKLATDNE 531

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            L ++ ++ A       E ++L   L     E +    E   +        + L+Q   +
Sbjct: 532 RLADELEQKAA------ENERLADELEQKAAENERLAEELEQKAAENEKLADELEQKAAE 585

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                       A    + +  +Q  A  +R      QK    +++A+       +K A 
Sbjct: 586 NERLAEELEQKAAENERLAEELEQKAAENERLAEELEQKAAENERLAE----ELEQKAAE 641

Query: 617 LISILHEVHIQIHQ 630
              +  E+  +  +
Sbjct: 642 NERLAEELEQKAAE 655


>gi|332212722|ref|XP_003255468.1| PREDICTED: alpha-internexin [Nomascus leucogenys]
          Length = 499

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/316 (9%), Positives = 82/316 (25%), Gaps = 34/316 (10%)

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           G        S G D         +    +   +               +      +   L
Sbjct: 63  GLAYRRPPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRAL 122

Query: 405 EIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           E  L        +   +   + + +RD   QL +              ++    + +   
Sbjct: 123 EAELAALRQRHAEPSRVGELFQRELRDLRAQLEEASSARSQALLE---RDGLAEEVQRLR 179

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD----NNELQKLW 519
            R  + S  +    +    ++  +    +    + ++    L ++ +     + E+ +L 
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTE--------A 569
           + L +                L           + L  +   +      ++        A
Sbjct: 240 ATLQASSQAAAEVDVAVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299

Query: 570 NIVDVRQGYQQALALYKRF---------------RLLSRQKEEIEKQIAQVTAKGEAEKT 614
              +  +  ++ +  Y+R                  L RQ  E+E++       G  +  
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEER-HSAEVAGYQDSI 358

Query: 615 AILISILHEVHIQIHQ 630
             L + L     ++ +
Sbjct: 359 GQLENDLRNTKSEMAR 374


>gi|328772567|gb|EGF82605.1| hypothetical protein BATDEDRAFT_86542 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 858

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 74/219 (33%), Gaps = 16/219 (7%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           D  +        E  G   +         +    QR  +    + +  +K    E  L  
Sbjct: 378 DLREFDEDDPPDESLGDDTFKIPEDGETIEDAKQQRDEELEQEQKRQEEKQRQEERRLQE 437

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                    +++ + L D +    EL++L   L  +   Q     ++  +R  ++   EL
Sbjct: 438 EKRRQEEKRRQEERRLQDEKRRQEELERLEKRLQEEKQRQDERRLQDEKRR--QQELEEL 495

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ--------------K 595
            KQ  R++++           +   RQ  ++     +R     RQ               
Sbjct: 496 QKQRQRELKELEKQRQQELEELEKQRQEEKRLQDEKRRQDEKRRQEEKRLQDEKRRQQEL 555

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           EE+EKQ  Q   K E ++   L  +  +   ++ ++E Q
Sbjct: 556 EELEKQRQQELEKLEKQRQQELEKLEKQRQQELEKLEKQ 594



 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 77/217 (35%), Gaps = 13/217 (5%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + I D  QQ  ++   E        ++  R   ++   Q   +    +    +K    E 
Sbjct: 404 ETIEDAKQQRDEELEQEQKRQEEKQRQEERRLQEEKRRQEEKRRQEERRLQDEKRRQEEL 463

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFVEQKYFLPEEI-HQRL 541
             L   +      Q+  + L D +    EL++L         +  +Q+    EE+  QR 
Sbjct: 464 ERLEKRLQEEKQRQD-ERRLQDEKRRQQELEELQKQRQRELKELEKQRQQELEELEKQRQ 522

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEK 600
            E+   +  ++ D + R         +    ++ +  +Q     ++  +   ++ E++EK
Sbjct: 523 EEKRLQDEKRRQDEKRRQEEKRLQDEKRRQQELEELEKQRQQELEKLEKQRQQELEKLEK 582

Query: 601 QIAQVTAKGEAEKTAIL-------ISILHEVHIQIHQ 630
           Q  Q   K E ++   L          L E+  +  Q
Sbjct: 583 QRQQELEKLEKQRQQELEKLQKQRQQELEELERKRQQ 619



 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             E + +RL E    +  ++L  + R         +    ++++  +Q     +    L 
Sbjct: 462 ELERLEKRLQEEKQRQDERRLQDEKRRQQELEELQKQRQRELKELEKQ---RQQELEELE 518

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +Q++E EK++     + + ++       L +   +  ++E  E
Sbjct: 519 KQRQE-EKRLQDEKRRQDEKRRQEE-KRLQDEKRRQQELEELE 559


>gi|311068892|ref|YP_003973815.1| DNA primase [Bacillus atrophaeus 1942]
 gi|310869409|gb|ADP32884.1| DNA primase [Bacillus atrophaeus 1942]
          Length = 317

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 91/344 (26%), Gaps = 79/344 (22%)

Query: 42  CCPFHDEKTPSFHCNDSKGFYYCFSCHV------KGD---HLSFLSALLGCSFIESVQRL 92
           C PF  E  PSF  N   G +             KG+    LSFL    G ++ E+   L
Sbjct: 38  CSPFRAENKPSFAVNMEDGTWID--SGAYDEDWRKGNFVKLLSFLM---GVTYDEARDYL 92

Query: 93  AAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSH 152
                                   +   ++   +F         DK       E      
Sbjct: 93  LEKY------------------RTIFSDMD---NFKLDIWLPEIDKPYRTVSKEELEPFM 131

Query: 153 AIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRS 212
               +               L  +G +E+      +  D D  A     F          
Sbjct: 132 YRNPY---------------LTNRGITEKVQRAFKIGYDRDKQAIVICWF---------D 167

Query: 213 SRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSS 272
             G++I    R++         +          ++++          K            
Sbjct: 168 KHGEIINLKFRSIRDKRFWYLDDGQ-----PIKQHIFGLHFIFKLNLK------------ 210

Query: 273 FIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAY 332
            +  VE   D L L   G+  +     +   + +  LL      +V+  D D+ G R   
Sbjct: 211 RVFAVESETDALYLWSHGIPAIAFGSASMSKQQEKVLLNSPIEELVIATDNDNAGYRFRK 270

Query: 333 KAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376
              DL    +   +     +    +D +       K A EK+  
Sbjct: 271 ---DLEKRLMGKLDLSLMPIPYGLKDVNDIAPNRLKEATEKVER 311


>gi|306825549|ref|ZP_07458888.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304431910|gb|EFM34887.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 1740

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 15/106 (14%)

Query: 14  HIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS-CHVKG 71
            + I  +     ++  R+   + +  YWA    HD    SF  +  K  ++ +S     G
Sbjct: 10  SLDILEVARSLGMEMKRK---SHREYYWA---EHD----SFKIDTVKNTWHWYSQADKYG 59

Query: 72  DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117
           D ++ +  +   S+ E++  L    G   P   P  E+++     L
Sbjct: 60  DTINLVQEMRNVSYKEAMVFL--ETG-SFPEAKPVEEERQPFNYTL 102


>gi|229134656|ref|ZP_04263465.1| Chromosome partition protein smc [Bacillus cereus BDRD-ST196]
 gi|228648702|gb|EEL04728.1| Chromosome partition protein smc [Bacillus cereus BDRD-ST196]
          Length = 1189

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 53/141 (37%), Gaps = 4/141 (2%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           +E  +    ++  +  +  L   L     E +    +    +  ++       QL++ + 
Sbjct: 267 EELEELRGQLQAVDESVNSLQEVLLLSSKELEKLEGQRELLKERKQNATTHCAQLEKLIV 326

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
           +    + + +  I    +   Q +    + + L ++  + E+ +A   A+   E+   L 
Sbjct: 327 ELTEKTTSYDGEIETSTEALMQFVN---QVKELEKKLHDNEQLLATF-AENLEEQIENLK 382

Query: 619 SILHEVHIQIHQIESQEAMIE 639
               E+  Q   + ++ +MIE
Sbjct: 383 GDYIELLNQQASLRNELSMIE 403


>gi|255580072|ref|XP_002530869.1| Ubiquitin-protein ligase bre-1, putative [Ricinus communis]
 gi|223529558|gb|EEF31509.1| Ubiquitin-protein ligase bre-1, putative [Ricinus communis]
          Length = 945

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 76/243 (31%), Gaps = 14/243 (5%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGY 446
              E        +    E  +      IK +      Y   I + + Q ++   T++   
Sbjct: 663 CAAEAEIAELRAKLDASERDVWELTEAIKSKDREAEAYISEI-ETIGQAYEDLQTQNQHL 721

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
            +   +   +  +        + +L      K+   ++   + T + +  I   Q +E  
Sbjct: 722 LQQVTERDDYNIKLVSESVKTKQALSSLLSEKQALTKQLQQVNTSVEYLKIRISQSEE-- 779

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
                  +++   +       E +         R       + LK L   V  +      
Sbjct: 780 -------QMKVCLTEAIRSTEEDRRLAVNLETARWELMDAEKELKWLKYAVGSSEKEYEQ 832

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            +  + ++R   +   +  ++   L ++ +E+  +IA++T++        L   + E   
Sbjct: 833 IQKKMDEIRTELRDERSEREK---LDQELKELNDKIAEMTSESGEAAIQRLQDEIKECKS 889

Query: 627 QIH 629
            + 
Sbjct: 890 MLK 892


>gi|204305653|gb|ACG63678.2| intersectin 1 isoform ITSN-l (predicted) [Otolemur garnettii]
          Length = 1716

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 15/165 (9%)

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           LI    IL +Q +++       + L  L   L     E K    +++  +L E    E  
Sbjct: 541 LIPEKQILNDQLKQVQQNSLHRDSLLTLKRAL-----EAKELARQQLRDQLDEVE-KETR 594

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            +L              E +     Q  +   A   + +   R+  E+EKQ  +   +  
Sbjct: 595 SKLQEIDIFNNQLKELREIHNKQQLQKQKSIEAERLKQKEQERKIIELEKQKEEAQRRA- 653

Query: 611 AEKTAILISILHEVHIQIH--------QIESQEAMIEGFGKMSGR 647
            E+    +  + +              + + +E++ +  G+  GR
Sbjct: 654 QERDRQWLEHVQQDEEHQRPRKLHDEERQKREESIKKKDGEEKGR 698


>gi|198461339|ref|XP_001361988.2| GA18234 [Drosophila pseudoobscura pseudoobscura]
 gi|198137314|gb|EAL26567.2| GA18234 [Drosophila pseudoobscura pseudoobscura]
          Length = 1683

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 96/354 (27%), Gaps = 42/354 (11%)

Query: 336  DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
            +                     D  +          E+     L       + E E    
Sbjct: 967  EQQDRRFEQERSSLEKTYEADMDMLARQHKQLVEKTEQTQENELRSSSKRIRSEQEQELK 1026

Query: 396  NTPDERAELEIHLKNCINHIKDQKLRYYYSQA------------------IRDRLQQLFQ 437
               +   +    LK  ++     K +  + Q                   +++R + L +
Sbjct: 1027 IFRENLKQEIRLLKQEVDLFPKDKRKDEFKQRRSAMELDHEEKERAFLDSLKERHELLLR 1086

Query: 438  KYITEHSGYGRYWKKNARHRDQKGPSQR------LMQSSLVKGKLSKKPSLREAALLL-- 489
            +   +H  +     +N   + Q     R      L +  L +     K  ++E   +   
Sbjct: 1087 RLSEKHRDHLATINRNFLQQKQNAMRTREALLWELEEKQLHERHQLSKRHVKEICFMQRH 1146

Query: 490  -TLINHPAILQEQYQELADIRYDNNELQKL-WSFLFSDFVEQKYFLPEEIHQRLC-ERGF 546
              ++ H   L +  + L     D  + Q L    L      ++        + L      
Sbjct: 1147 QMIVRHEKELDQVKRMLQRKEEDMVKKQTLEKRALPKRIRAERKARDLMFRESLRISTNL 1206

Query: 547  GELLKQ--LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--FRLLSRQKEEIEKQI 602
               +++  + +            E       Q   + L   +    R L + + E  K +
Sbjct: 1207 DPEIERDRVKKFQEQEKKRYMQEERRFDIKHQKQLEELRATRESAIRELEQLQNEKRKAL 1266

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIH-QIESQEAMI--------EGFGKMSGR 647
             +       E    L + L E   Q+  + +   A+I        + FG +S R
Sbjct: 1267 VEHEHVKLQEIDERLKAELREWREQLVPRKQRVNALIKTAIDEHEKRFGLVSNR 1320


>gi|119575206|gb|EAW54819.1| golgi autoantigen, golgin subfamily a, 3, isoform CRA_c [Homo
           sapiens]
          Length = 1496

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 528 EQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           E      E    ++ E       +L ++L+    +        ++     +Q  Q  L L
Sbjct: 646 EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTL 705

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGE-----AEKTAILISILHEVHIQIHQIESQEAMIE 639
            +R + L   ++E    + Q+T   E      +    L +   E+  ++ +++ + A  E
Sbjct: 706 LQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASRE 765


>gi|146304600|ref|YP_001191916.1| chromosome segregation ATPase-like protein [Metallosphaera sedula
           DSM 5348]
 gi|145702850|gb|ABP95992.1| Chromosome segregation ATPase-like protein [Metallosphaera sedula
           DSM 5348]
          Length = 380

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 54/159 (33%), Gaps = 4/159 (2%)

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-EIHQRLCE 543
             +L  L   P   +E  + L     +  EL++L   L     +      + E      +
Sbjct: 5   EEILRLLREDPEFRREVMELLGLAPNEMRELKELVRQLTEVVNKLVEGQAKIETRSSEAQ 64

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E L +L+  V         +E  +  +    ++     KR      + E   +++A
Sbjct: 65  KRSEERLTRLESAVEKLAEAQKRSEERLTRLESAVEKLAEAQKRSEERLTRLESAVEKLA 124

Query: 604 QVTAKGEA--EKTAILISILHEVHIQ-IHQIESQEAMIE 639
           +   + E    +    +  L E   +   ++   E+ +E
Sbjct: 125 EAQKRSEERLTRLESAVEKLAEAQKRSEERLTRLESAVE 163


>gi|118396835|ref|XP_001030754.1| hypothetical protein TTHERM_01015940 [Tetrahymena thermophila]
 gi|89285068|gb|EAR83091.1| hypothetical protein TTHERM_01015940 [Tetrahymena thermophila
           SB210]
          Length = 1194

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 42/321 (13%), Positives = 107/321 (33%), Gaps = 14/321 (4%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
            P         +                 S+ +      +   +   +     S+   + 
Sbjct: 391 KPVQEQENIQSEDFDKKNKLNYNHRESHESKEQAVKDLQQNNIEKNGKNQTFNSVQNREK 450

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD-------RLQQLFQ 437
           L   E  N +    +    L   +         + L+  Y Q I++       ++Q+L  
Sbjct: 451 LTSVEQANSAKKLKNNFENLIGQVGPNEEKSYIEGLKNIYQQEIKNLEIKHKIKIQELEN 510

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INHPA 496
                         +N  +  Q        Q ++++ +   K  L E  L     INH +
Sbjct: 511 TISYMRQHMDLMEDRNKENIAQIQQDLMKQQRAVIEQERDSKFGLNELRLQYQEEINHLS 570

Query: 497 ILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
           +  E  +  +  +    +E Q+ +     +  +       ++          E + +++ 
Sbjct: 571 LALETEKAKSIQLEKKMSEYQQHYQMKLREMSDLSK--KSKLDAESERVKLQEYIDEMEE 628

Query: 556 QVRDAGL-WSATTEANIVDVRQGYQQALALYK-RFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           ++ D  +      E  +  ++  Y+ ++   K + +  S Q  ++E+Q+    +  + EK
Sbjct: 629 KIEDVRVKMVQDNELALQKIKIDYESSIEDLKDQIKEKSEQIAKLEQQLV-TDSSQQHEK 687

Query: 614 TAILISILHEVHIQIHQIESQ 634
             +L     E+  QI+Q++++
Sbjct: 688 ERLLKKENQELERQINQLKNE 708


>gi|28870813|ref|NP_793432.1| chromosome segregation SMC protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28854062|gb|AAO57127.1| chromosome segregation SMC protein, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 1162

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELER 203

Query: 601 QIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           Q+ ++  + + AEK     +   ++  Q+  +  Q A+ E  G
Sbjct: 204 QLERLHRQAQAAEKYQEYKAEERQLKAQLSALRWQ-ALNEQVG 245


>gi|4504063|ref|NP_002068.1| Golgin subfamily A member 1 [Homo sapiens]
 gi|1669824|gb|AAB81549.1| Golgi complex autoantigen golgin-97 [Homo sapiens]
 gi|119608011|gb|EAW87605.1| golgi autoantigen, golgin subfamily a, 1, isoform CRA_a [Homo
           sapiens]
 gi|119608012|gb|EAW87606.1| golgi autoantigen, golgin subfamily a, 1, isoform CRA_a [Homo
           sapiens]
          Length = 767

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/259 (10%), Positives = 80/259 (30%), Gaps = 31/259 (11%)

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                ++     + D   +    Q I+++L+   +K+  + S   ++ ++N   +  +  
Sbjct: 62  RRNEQIRKLEARLSDYAEQVRNLQKIKEKLEIALEKH--QDSSMRKFQEQNETFQANRAK 119

Query: 463 SQRLMQSSLVKGKLSKKPSL----REAALLLTLINHPA-----ILQEQYQELADIRYDNN 513
               +  +L +        +    +E  +L   +         + Q + +      +   
Sbjct: 120 MAEGLALALARKDQEWSEKMDQLEKEKNILTAQLQEMKNQSMNLFQRRDEMDELEGFQQQ 179

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           EL K+   L            E        R      ++L    + +   S   E     
Sbjct: 180 ELSKIKHMLLKKEESLGKMEQEL---EARTRELSRTQEELMNSNQMSSDLSQKLEELQRH 236

Query: 574 ---VRQGYQQALALYK----RFRLLSRQKEEIEKQIAQ---------VTAKGEAEKTAIL 617
              + +     +A       +   L ++++E++  I Q            + + +    L
Sbjct: 237 YSTLEEQRDHVIASKTGAESKITALEQKEQELQALIQQLSIDLQKVTAETQEKEDVITHL 296

Query: 618 ISILHEVHIQIHQ-IESQE 635
              +  +  ++ Q +  +E
Sbjct: 297 QEKVASLEKRLEQNLSGEE 315


>gi|326429011|gb|EGD74581.1| myosin head [Salpingoeca sp. ATCC 50818]
          Length = 1312

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 37/102 (36%), Gaps = 16/102 (15%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                 +LL+++ +         A  ++   +  +  +QA     R   L +     +++
Sbjct: 799 RAEAERQLLERISKL-------EAERQSKAQETEEMLRQARDEATRREELEQLLHAEQER 851

Query: 602 IAQVTAKGEAEKTAILISILHE---------VHIQIHQIESQ 634
           I + T K   E+      +L E         + ++  +++S 
Sbjct: 852 IREQTQKQLQERLEAEERLLQEQEKAMAVQALELERERLKST 893


>gi|311255169|ref|XP_003126114.1| PREDICTED: LOW QUALITY PROTEIN: myosin-9 [Sus scrofa]
          Length = 1967

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 87/265 (32%), Gaps = 28/265 (10%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EKL ++     +     E E        ++ ELE    +    +++++ R  + QA + 
Sbjct: 880  AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKK 939

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++QQ  Q+   +        +K    +       + ++   +  +       +E  LL  
Sbjct: 940  KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCKLAKEKKLLE- 998

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +                      E    +L 
Sbjct: 999  -----DRIAEFTTNLMEEEEKSKSLAKLKNK--------------------HEAMITDLE 1033

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L R+ +       T      D      Q   L  +   L  Q  + E+++    A+ E
Sbjct: 1034 ERLRREEKQRQELEKTPRKLEGDSTDLSDQIPELQAQXAELKMQLPKKEEELLAALARVE 1093

Query: 611  AEKTAILIS--ILHEVHIQIHQIES 633
             E     ++   + E+  QI +++ 
Sbjct: 1094 EEAAQKNMALKKIRELESQISELQE 1118



 Score = 37.2 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 70/228 (30%), Gaps = 15/228 (6%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            + ++ +    + +R+   +L  +            K     +D +       ++     K
Sbjct: 1579 QSEEKKKQLVRQVREMEAELEDERKQRSMAVAARKKLEMDLKDLEAHIDSANKNRDEAIK 1638

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +K   +    +  L         + + LA  + +  +L+ + + +     E       
Sbjct: 1639 QLRKLQAQMKDYMREL---EDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERA 1695

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +   +   EL  ++        L           + Q  ++         L++ + 
Sbjct: 1696 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELVNDRL 1752

Query: 596  EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIESQ 634
            ++   QI Q+      E++           L     E+ +++ ++E  
Sbjct: 1753 KKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKVKLQEMEGT 1800


>gi|296197573|ref|XP_002746340.1| PREDICTED: tripartite motif-containing protein 39-like [Callithrix
           jacchus]
          Length = 488

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 69/187 (36%), Gaps = 2/187 (1%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
             + R       +   S     ++   +   I   ++  + ++ L+   Y++ E   L  
Sbjct: 70  RKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYEDQEAVCLIC 129

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ- 579
            +            ++  Q   E+   + L+ L++++++     ++ E    ++++  + 
Sbjct: 130 AISHTHRAHTVVPLDDATQEYKEK-LQKCLEPLEQKLQEITRCKSSEEKKPSELKRLVES 188

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +   + + F  L R+ +E ++ +     + E +    L      +  +   +    A +E
Sbjct: 189 RRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKRRDLAHLAAEVE 248

Query: 640 GFGKMSG 646
           G    SG
Sbjct: 249 GKCLQSG 255


>gi|296082375|emb|CBI21380.3| unnamed protein product [Vitis vinifera]
          Length = 1032

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 16/142 (11%)

Query: 512 NNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSATTE 568
           + EL +L   L     E K F    E + Q   ++    E  K++ +Q RD  L    + 
Sbjct: 501 DKELNELNKRLEQKESEMKLFGGDTEALKQHFGKKIMELEEEKRIVQQERDRLLAEVESL 560

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEK------QIAQVTAKGEAEKTAILISILH 622
           A   D ++   Q +   ++ + L  Q  +++K      Q+ +   K + E T  L   + 
Sbjct: 561 AATSDGQRQKVQDVHA-QKLKALEAQILDLKKKQENQVQLLKQKQKSD-EATKRLQDEIQ 618

Query: 623 EVHIQIHQIE---SQEAMIEGF 641
            +  Q  Q++    QEA  E F
Sbjct: 619 SIKAQKVQLQHKIKQEA--EQF 638


>gi|224112749|ref|XP_002316281.1| predicted protein [Populus trichocarpa]
 gi|222865321|gb|EEF02452.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/297 (9%), Positives = 76/297 (25%), Gaps = 23/297 (7%)

Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398
                        ++   +D              +   +           ++    +   
Sbjct: 274 HPLWNFRGHSGTAVVEFNKDWPGLHNAISFEKAYEADQQGKKEWFASSGEKSGIYCWVAR 333

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
            +       +   +  I D +      +    +  +L            RY K+      
Sbjct: 334 ADDYNSNNIIGEHLRKIGDVRTISDLIEEEARKQDKLVFNLTNVIETKNRYLKEMELRCS 393

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +   S   +     K   +    +R+              Q+   +   I+      +K 
Sbjct: 394 ETSASLNKLVQEKEKLLHAYNEEIRKIQTGA-----RDHFQKILNDHEKIKLQLESHKK- 447

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                   +        E       R   E +++   +     L +   +    DV +  
Sbjct: 448 -----ELEMRGSELEKREAKNESDRRSLSEEIEKNAVRNSSLELAALEQQKADEDVLKLA 502

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +             RQKEE+  +I ++  + +A++   L   +  +   ++ ++  E
Sbjct: 503 EDQ----------KRQKEELHNRIIRLEKQLDAKQALEL--EIERLRGALNVMKHME 547


>gi|149409158|ref|XP_001511881.1| PREDICTED: similar to transient receptor potential V1
            [Ornithorhynchus anatinus]
          Length = 1945

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 40/123 (32%), Gaps = 3/123 (2%)

Query: 514  ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            EL ++ + +     E++            +R    L   L+ + +         +    D
Sbjct: 1558 ELAQVKADIDRRIHEKEEEFEATRKNH--QRAIESLQTSLEAEAKGRAEALRLKKKMETD 1615

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-ILISILHEVHIQIHQIE 632
            + +   Q     K    L +  + +++QI  +  + + +      +   + +  +   + 
Sbjct: 1616 LNEMEIQLDHANKNNSELVKTLKRLQQQIKDLQVQMDEDARQHEELREQYNLQERRLSLL 1675

Query: 633  SQE 635
              E
Sbjct: 1676 QTE 1678


>gi|145508832|ref|XP_001440360.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407577|emb|CAK72963.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1957

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 52/548 (9%), Positives = 148/548 (27%), Gaps = 44/548 (8%)

Query: 129  HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
              +LK   +       D+       I+     +    R       + +    EK I    
Sbjct: 1208 RQNLKLDIEDFEGCQNDQINKLRKQIDDLNSQFFIQQRDINYLQSQIQFEQREKKIIIQN 1267

Query: 189  LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248
                D           +L   I   +  +                 N  E  ++++ K  
Sbjct: 1268 KTILDGHIKQMQEENLQLQNQIFKQQNDIEQLQKNMRQYNIIEYSSNQKEGFIYNEQKT- 1326

Query: 249  YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV--VSSLGTALTEYQ 306
               +   N         +++ + + I   +   D L         +  + +    + E Q
Sbjct: 1327 ---YKNQNESLSFDITKLKQENQTLIQECQKLKDALFYMTEEKNRLEKIFNYQNQVQETQ 1383

Query: 307  LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366
             + + +         + +   ++     I+      +       ++     D  +F    
Sbjct: 1384 FQQIQQSQIITQNNKNEEQDQVKQNKFYIEQNKIWDLSSKISAALVKLEEFDDLNFRIQK 1443

Query: 367  GKTAFEKLIV--------------ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
             K   +  I               +      +    E +        +  E+   ++  I
Sbjct: 1444 TKQDLQNQIQKLKQQAIYVQQLRIQKKDEDKIKKSNEQKFPQNQHNQKVDEISQIIQALI 1503

Query: 413  NHIKDQKLRYYYSQAIRDRLQQLFQKYIT-----EHSGYGRYWKKNARHRDQKGPSQRLM 467
              I D          I ++++QL     +     +        ++N + ++         
Sbjct: 1504 ISIGDHIQLNSQIVQITEKIKQLLGDTNSIAASIQLQNQTLKKQENVKQKENSSIQTNYE 1563

Query: 468  QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------- 520
            +        + K + +       LI    +  E Y++ + +     E Q++ +       
Sbjct: 1564 EQYKELMVENDKLNQKANQYQHLLIQ---LQDEYYKQGSALDSITKEYQQINNKNEFKII 1620

Query: 521  FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
             L            +E+      +   +L   +D++ +            IV+ +   ++
Sbjct: 1621 KLIHFEQLNDKIYKQELQIEEQSQQIQDLQNYIDQEQKQHLEEITRLNNQIVENQLQGEK 1680

Query: 581  ALALYKRFRLLSRQKEEIEKQIAQVTAK---------GEAEKTAILISILHEVHIQIHQI 631
               L +    L +    ++  + +                E+   L      ++ ++ Q+
Sbjct: 1681 FNQLNQENSTLKQDISNLQSVLQKQQDLIEEQKLIYIQNQEEYTQLKQEAQRLYQRLLQM 1740

Query: 632  ESQEAMIE 639
             +   +++
Sbjct: 1741 SNSNNILK 1748


>gi|119621343|gb|EAX00938.1| Rho-associated, coiled-coil containing protein kinase 2, isoform
           CRA_b [Homo sapiens]
          Length = 947

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 97/288 (33%), Gaps = 39/288 (13%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD---- 430
           + E     +     E +        E  +        +  ++DQ     Y   +      
Sbjct: 381 MSEKQLKQENNHLMEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 440

Query: 431 ----------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
                     +L +  Q+   E                 K  S++L +S   +    L K
Sbjct: 441 ELKEECEEKTKLGKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 500

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 501 EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 552

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
            +L +    E L +L  +   A    A  E  ++  R    QA+     +  R   + R 
Sbjct: 553 NKLKD--VQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 610

Query: 594 -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 611 NDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 655


>gi|121700198|ref|XP_001268364.1| filament-forming protein (Tpr/p270), putative [Aspergillus clavatus
           NRRL 1]
 gi|119396506|gb|EAW06938.1| filament-forming protein (Tpr/p270), putative [Aspergillus clavatus
           NRRL 1]
          Length = 2014

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/211 (11%), Positives = 73/211 (34%), Gaps = 18/211 (8%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           Q +R  L ++ Q               +AR  +       +++++  +   + K + +  
Sbjct: 431 QELRATLDEMVQDLEASKPEIDELRADHARLENAVVEMSNILETAGKERDDATKEARKWQ 490

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             +  L     IL++Q ++L+       +++ L   +      +  +  +E+ +++  + 
Sbjct: 491 GQVEGLAREGDILRQQLRDLSA------QVKVLVLEVAILKEGEGNYDRDEL-EKIARQE 543

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             E   +L+   R                   ++    L ++   L R   E+  ++   
Sbjct: 544 IDESAAELNPTGRFISRNLM-----------TFKDLHELQEQNVTLRRMLRELGDKMEGA 592

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            A+ +          L ++ I++     + A
Sbjct: 593 EAREKDAVRQQEQEELKDLRIRVQTYRDEIA 623


>gi|115396690|ref|XP_001213984.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114193553|gb|EAU35253.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1129

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 79/266 (29%), Gaps = 31/266 (11%)

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
             E          +  E E  +K     I+         Q   +RL+   +  + +    
Sbjct: 720 HEELRTEMKAAKSKIVEREKEVKTLNQKIR---------QETDNRLKAEERLTLAQSDLR 770

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
               KK      ++  S  L ++         K    E  +          L+   +E+ 
Sbjct: 771 FSESKKQEALETKERISNDLSKAHDDLKNARSKIRELENQITQL----NKDLEGLREEIQ 826

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEE------IHQRLCER--GFGELLKQLDRQVR 558
                +   Q L + +     E    + E       + + L +      E  ++ +   R
Sbjct: 827 LKTAQHASAQSLMNSMRDQGSEIGMQMKEARERCESLEEELADAHRLLSERTREGETMRR 886

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRF--------RLLSRQKEEIEKQIAQVTAK-- 608
                 +  EA + D ++  + A+    R         R  +R+ EE++ ++ +      
Sbjct: 887 LLSDIESRAEAKVRDFKERMEAAIEERDRAEDEASAQGRRRARELEELKSKVREAEKALR 946

Query: 609 GEAEKTAILISILHEVHIQIHQIESQ 634
              E    L     +   +  Q+E Q
Sbjct: 947 SAEEDKEELEHSQRDWKRRRDQLEEQ 972


>gi|327285352|ref|XP_003227398.1| PREDICTED: myosin-Vc-like [Anolis carolinensis]
          Length = 1705

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 72/213 (33%), Gaps = 19/213 (8%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            ++ +    +  RL QL +        + R +    ++R      + L+     +  L++
Sbjct: 778 VIQKHCRGYLVRRLCQLIRVAALTIQAFTRGFLARKKYRKMVEEQKALVLQKYARAWLAR 837

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +        +L +     +     +    +   N E   L   L +        +     
Sbjct: 838 RRFQNIRRFVLNI----QLSYRVQRLQKKLEDQNRENNVLLERLTTLASNHSNDV----- 888

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEE 597
                    E +++L + +        T++      +  Y+Q +  L      L +QK +
Sbjct: 889 ---------ETIQKLQQDLEKLATQKKTSDEKEKKHKDEYEQRVSKLENHNSELHQQKRQ 939

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +EK++ + T + + +   +   +  +V  +  Q
Sbjct: 940 LEKELQEKTEEMKEKMDHLTKQLFADVQKEERQ 972


>gi|313227523|emb|CBY22670.1| unnamed protein product [Oikopleura dioica]
          Length = 1012

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ----ALAL 584
                   + +    R   E   +++ + R+A  +    +A    +R+  ++     +  
Sbjct: 504 DPEAEKRRLLEEEAARKIEEERIRVENEKREALKFENMLKAQEEQLRKREEELRLKEMTF 563

Query: 585 YKRFRLLSRQKEE-IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            ++  +L +Q+EE ++++ A++ A+   E+     +   E   Q+  ++ Q+A
Sbjct: 564 LQQQDMLRKQEEEILKQEEAELEAQRAKEEAQRKAAE-EEEQRQLAILKQQQA 615


>gi|309354943|emb|CAP39687.2| CBR-SMA-1 protein [Caenorhabditis briggsae AF16]
          Length = 4156

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/294 (9%), Positives = 97/294 (32%), Gaps = 20/294 (6%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
             +     A  K    +          +  +       +    +  +     +++  + + 
Sbjct: 1063 RKFDKLEADMKTNGGTQLKHINDIANDLISEGHGQSRQIENRQHKINAMWENLERLRKQR 1122

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                   +R+        +        +++  R+ +     Q L +       L  K + 
Sbjct: 1123 AVRLEATERVADFDTTCESAREWMLGKFEQLDRNPNDVKSLQNLERDLKP---LEDKIAA 1179

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
             E        +HP       +++A       EL+ L + L     E+     +   + + 
Sbjct: 1180 LEKLAAAVKKDHPEEAAAIERKIA-------ELRTLHADLLRRAQEKMLLAEQSQGKEMF 1232

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK---EEIE 599
            E    +++  +++     G+       ++ +  +  ++   L ++ +    +    +E+ 
Sbjct: 1233 ESALRDMMSWIEK--TRKGMMEDVHPVDVAEAEELLKKHYELGEQIKDKKYEVEYCQELG 1290

Query: 600  KQIAQVTA-----KGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            +++ + +      + + +     ++ L +++ +   I  Q+  ++ F + S R+
Sbjct: 1291 RRLLERSPRMPKVEEQLQALVSEMAALRDLYRRRDTILKQQLDLQLFNRESERI 1344


>gi|302872030|ref|YP_003840666.1| SMC domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574889|gb|ADL42680.1| SMC domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 857

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 89/271 (32%), Gaps = 18/271 (6%)

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
              +  ++G  P    +  G+   E +  E          +E + R  +   +   L   
Sbjct: 422 YRLIEANQGRCPVCLRQINGQEEKEHIKNE-----IAAQGKEFKQRRDSLTKKLEILRKE 476

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
                  IK++++     +    +L  + +    +     +          Q   S +L 
Sbjct: 477 FSELEEKIKNEEV----LRTREKKLHGMLENLKAKMGQKTQNISNLQNSIVQVNQSIKLC 532

Query: 468 QSSLVKGKLSKKPSLREAALL-------LTLINHPAILQEQYQELADIRYDNNELQKLWS 520
           +  + + K       RE ++L         L+     L+   +  +++  +  + + L  
Sbjct: 533 EEEIERLKEEMTYLKREISILNFDENYYTQLLQREKELEIYQRLFSELTVNKVKAENLKK 592

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +     ++K  L +    +            +  +   + + +   E+ I ++++    
Sbjct: 593 EILEYQEQEKEILKKVEDLKQEIANLSTFAHAVMLEKVKSDILTC--ESKIKNLQESLNS 650

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            L           Q EE +++++++ ++ E 
Sbjct: 651 VLKELGILEQKLNQIEEAKEKLSRLESEIEE 681


>gi|302391023|ref|YP_003826843.1| Histidine kinase [Acetohalobium arabaticum DSM 5501]
 gi|302203100|gb|ADL11778.1| Histidine kinase [Acetohalobium arabaticum DSM 5501]
          Length = 379

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 61/166 (36%), Gaps = 18/166 (10%)

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            + E  L+    +   + +       +      +LQ++           +      +  +
Sbjct: 12  QVVEKILIKIENSQNEVFEIAETARQEYEATKQDLQEIRD---ETAETIQKVDQLRLKNQ 68

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
              R   E+ + L+    +      T +    + ++   +   L ++ + L ++++E+E+
Sbjct: 69  RTRRELMEVSRDLNNYDEE------TIKEAYEEAKEVQVELSLLQEKEKRLRKKRDELER 122

Query: 601 QIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQEAM 637
           ++ ++    E  +  +         L + L +   Q+ +++ +E +
Sbjct: 123 RLQELEQTVERAEDLVSQIGIVKDYLTNDLQKFSTQVEELKQKEEL 168


>gi|297694763|ref|XP_002824641.1| PREDICTED: myosin-7-like [Pongo abelii]
          Length = 1911

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1542 NQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1601

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1602 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1661

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1662 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1721

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1722 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1781

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1782 KGGKKQLQKLEARVRELENELEAEQKRNA 1810


>gi|294339813|emb|CAZ88176.1| putative GGDEF family protein, diguanylate cyclase domain
           [Thiomonas sp. 3As]
          Length = 546

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/278 (9%), Positives = 79/278 (28%), Gaps = 23/278 (8%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
           P       R  E    +        +    + +  +   + ++   + + +R   L  + 
Sbjct: 50  PDWGRALPRLLEQWERSQSGLTQLQKRQQLDRLAALPTPQAQWRELEQLLERWSALPARS 109

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI-- 497
            ++ +      + +A  R      +  +Q+     +        +  L   +        
Sbjct: 110 GSQSASTPIETRDDALSRAGSEWRELWLQTLKFGVRPFCAHDTAQRLLRELMAAAENAEQ 169

Query: 498 -------LQEQYQELADIRYDNNELQ----KLWSFLFSDFVEQKY-----FLPEEIHQRL 541
                   +E +  +   +     ++    +L   L     +             I ++L
Sbjct: 170 AADLGTQAREVWLAIDREQSTEEAVRNGLIELARLLLDHLGDLVPQAWVGVQATAIREQL 229

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF---RLLS--RQKE 596
                 E ++     VRD  +  +    +  D     +  + L  R             +
Sbjct: 230 QTPLVPERIESAQNAVRDLLVRHSVLRKSEDDAHHTAKALIDLLVRKLGDYAAEGGEYNQ 289

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +E ++ Q+ +  E ++   L+  + +    + Q   +
Sbjct: 290 RMEARLQQLQSSREWDEIRDLVQDVLDDSRNMQQRSGE 327


>gi|195112162|ref|XP_002000645.1| GI10349 [Drosophila mojavensis]
 gi|193917239|gb|EDW16106.1| GI10349 [Drosophila mojavensis]
          Length = 1293

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 43/144 (29%), Gaps = 18/144 (12%)

Query: 505 LADIRYDNNELQK---LWSFLFSDFVEQKYFLPEEIHQR---------LCERGFGELLKQ 552
           L   ++ N   Q    L      +    +        QR         L +      ++Q
Sbjct: 688 LPPAQFVNETHQIHSILEEVCIEEIAANEKPSSSSFAQRSMRLRTSTQLKKSEVQPQIEQ 747

Query: 553 L---DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ---IAQVT 606
           +   ++Q  +        +      R+  ++     +  + L ++ E  +++   I +  
Sbjct: 748 IDLQEKQEENQQRKGEKPKKKEQQERELREKQQMENENKKKLEKEIERQQRELMDIQEKE 807

Query: 607 AKGEAEKTAILISILHEVHIQIHQ 630
            K   +K         +   Q+ +
Sbjct: 808 KKANEQKKQQENEAREQQDKQLEE 831


>gi|168024406|ref|XP_001764727.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684021|gb|EDQ70426.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 521

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 75/193 (38%), Gaps = 7/193 (3%)

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
           +R   Q    + L+ + + + +++ +    E +L   L     I+++Q +++ D++  + 
Sbjct: 266 SRAGQQARELKELISAQITQLQMAVEKMDNELSLRQVLEEKDKIIEDQKKKIGDLQRASV 325

Query: 514 ELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
                +S L   F E +       ++ + L E    E ++  ++   +    +       
Sbjct: 326 TDAFKYSRLEHQFKETQAEWAKENKLAKSLMELTKQEYMELRNQYQEEKNRVAELEAGRS 385

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQI-----AQVTAKGEAEKTAILISILHEVHI 626
                  +Q+ +       L R+  E+E ++      Q      +     L   +H +  
Sbjct: 386 KLEDDFQRQSESSKTENEQLKRRIAELEAEMITVTTQQGEVNPASTSLRELEKQVHALEE 445

Query: 627 QIHQIESQEAMIE 639
           Q+ + ++Q A++E
Sbjct: 446 QLKERDTQIALLE 458


>gi|123480221|ref|XP_001323265.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121906126|gb|EAY11042.1| hypothetical protein TVAG_410450 [Trichomonas vaginalis G3]
          Length = 1154

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             E +  +L E       +++ R+  +        +    +  +   +     ++   L 
Sbjct: 820 EEELLRMQLEEERKQLEKEEIKRKQIEYQRKQEEYQRKQEEYARKQLEREEFERQQADLK 879

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           R++EE+E++  ++  K E E+   L     E+  Q+   + QE
Sbjct: 880 RKQEELERKQMELQMKQEEEERKRLQRE-EELKQQLEMKKEQE 921


>gi|73967066|ref|XP_868317.1| PREDICTED: similar to TAO kinase 1 isoform 2 [Canis familiaris]
          Length = 351

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 53/158 (33%), Gaps = 25/158 (15%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              + + L + L            + + +RL E    +L    ++         +T    
Sbjct: 83  QTRQYKALRNHLLE---TTPKSEHKAVLKRLKEEQTRKLAILAEQYDHSINEMLSTQALR 139

Query: 571 IVDVRQGYQQALALYKRFRLL-----------------SRQKEEIEKQI---AQVTAKGE 610
           + + ++   Q L +  +  L                   R+  E+E+++     +  +  
Sbjct: 140 LDEAQEAECQVLKMQLQQELELLNAYQSKIKMQAEAQHDRELRELEQRVSLRRALLEQKI 199

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            E+   L +   E    + + +++E  IE F   S RL
Sbjct: 200 EEEMLALQNERTERIRSLLERQARE--IEAFDSESMRL 235


>gi|3041708|sp|P13540|MYH7_MESAU RecName: Full=Myosin-7; AltName: Full=Myosin heavy chain 7; AltName:
            Full=Myosin heavy chain slow isoform; Short=MyHC-slow;
            AltName: Full=Myosin heavy chain, cardiac muscle beta
            isoform; Short=MyHC-beta
 gi|402372|gb|AAA62313.1| beta-myosin heavy chain [Mesocricetus auratus]
 gi|1581130|prf||2116354A beta myosin:SUBUNIT=heavy chain
          Length = 1934

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1565 NQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1624

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1625 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1684

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1685 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1744

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1745 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1804

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1805 KGGKKQLQKLEARVRELENELEAEQKRNA 1833


>gi|327259254|ref|XP_003214453.1| PREDICTED: thyroid receptor-interacting protein 11-like [Anolis
           carolinensis]
          Length = 1942

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 67/226 (29%), Gaps = 19/226 (8%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             L+    +  +  L    +    + +    + K+ A  +      +   + ++V  +L 
Sbjct: 378 DSLQPEVLRLQQALLDAENEILRLKRAEQEGFQKEVAALQSNANTCESTEEQNIVLNQLR 437

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           +    R+  L  ++  +  ++ E  +        + + Q+    +     +      E  
Sbjct: 438 QDLERRQQELDESIAENKTLIGELEEL-------DKQNQEATQHIIVLKGQLARQNAEAA 490

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----ALYKRFRLLSR 593
           +           +                      + R+   Q       L+   + L  
Sbjct: 491 N---TINELKLHIDSEKNNSSKLEAEKLEIIKEQENQREKLNQCTFALNDLHMTKQHLET 547

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + +E+++Q+          K       + E+   + Q E + + ++
Sbjct: 548 KMKELKEQLKASQQCRSQNK-----QDIVELKKNLLQREEEISALK 588


>gi|317009619|gb|ADU80199.1| hypothetical protein HPIN_04915 [Helicobacter pylori India7]
          Length = 541

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 91/308 (29%), Gaps = 36/308 (11%)

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G +P +     G     K  ++    +  L   E      +  +   EL    +     
Sbjct: 195 PGYNPSNQGYTGGDEQASKESLKHAKHILWLISCERGGIESDDLEYLQELYEEGRQVFIV 254

Query: 415 IKDQKLR-YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
           +     R     + +  ++++  +    E  G G Y     +   +     R+  S    
Sbjct: 255 VSRADRRTKKQLEEVATQIRETLEDRGIEFLGIGAYSATRYQEIKEFSEKSRVFDSLERF 314

Query: 474 GKLSKKPSLREAALLLTL----INHPAILQEQYQELAD-----------------IRYDN 512
            K   + S ++  +L  L    + +   + +   +                      +++
Sbjct: 315 LKKLNQRSEKQNEILSVLYEVHLKYEKAIDQDANQFKRYQKALHSVKLDLLQKGFDDFND 374

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEI-------------HQRLCERGFGELLKQLDRQVRD 559
           +   K+   L  +F E++    E +               ++ +R      ++   +  D
Sbjct: 375 DTFNKM-ESLKKEFSEKEESKRENLEQLNEAINLFKESIDKVFDRASAFTFEKYKEKNDD 433

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
                   E N  +  +  +  L       L  +Q +E  ++I       + + +   +S
Sbjct: 434 GEDDEEDDEENRREFEEIKKMVLFFRDCDDLNKKQIKEAREEINSCNELLQLDYSLANLS 493

Query: 620 ILHEVHIQ 627
            L E   +
Sbjct: 494 RLREFKEE 501


>gi|301615552|ref|XP_002937241.1| PREDICTED: hypothetical protein LOC100487561 [Xenopus (Silurana)
           tropicalis]
          Length = 326

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 95/284 (33%), Gaps = 24/284 (8%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR---LQQLFQKYITEHS 444
            E       + + R +L          ++ + LR +YSQ I  +   +  L ++      
Sbjct: 32  EEMSKSKEKSDERRNKLLEVKVLLQEILESETLREHYSQEIAKKSEEIDSLTEELRYGRE 91

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ-EQYQ 503
             G +   +A        SQ     + +    +      E +    + N+  +L+ +   
Sbjct: 92  ENGAFHVIDAEQVADDIQSQLSAVQNRINSITNYLQQDLEDSKKGEVANNLNLLESQLKD 151

Query: 504 ELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPEE--IHQRLCERGFGELLKQLDRQV 557
            L      + YD    + +   +   +  ++        I Q+  +           ++ 
Sbjct: 152 ALEKNQKWLVYDQQREEYVKGLMCRIYELEQQLGNANKTIQQQAKDTPSAAKQDDEKQKY 211

Query: 558 RDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
            D  L +A  + +         +A LA  K  R   RQ  + +KQ  +   +   ++T  
Sbjct: 212 YDKLLLAAKKDLDNEKKIASQLRAHLAAMKAERDEERQSYKEKKQKLRAELEVSKQETEE 271

Query: 617 LISILHEVHIQIHQI----------ESQEAMIEG---FGKMSGR 647
                 E+  QI  +          ++Q A++E     G+ SGR
Sbjct: 272 EKKRTKELTNQIQAMSMSLLKQHQQQNQIALLEQQVLCGRSSGR 315


>gi|282858888|ref|ZP_06268029.1| replicative DNA helicase [Prevotella bivia JCVIHMP010]
 gi|282588349|gb|EFB93513.1| replicative DNA helicase [Prevotella bivia JCVIHMP010]
          Length = 505

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 34/97 (35%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           G L  +    E  ++  L+          + +    + +   QK++  + S  + ++   
Sbjct: 23  GHLQPQAMEIERVVIGALLIDKDAFTVVSEIIRPETFYDPRHQKMYEAIQSLNLHERPVD 82

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              + + L   G  + +  LD  V  +   +++    
Sbjct: 83  IVTVQEELRHLGALDEVGGLDYLVEISSQVASSAHIE 119


>gi|257468539|ref|ZP_05632633.1| TOPRIM domain-containing protein [Fusobacterium ulcerans ATCC
          49185]
 gi|317062798|ref|ZP_07927283.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688474|gb|EFS25309.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 770

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 7/46 (15%)

Query: 43 CPFHD-EK--TPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSF 85
          CP  + EK   P F  N   G Y C +    G+       L    F
Sbjct: 18 CPICNKEKKENPCFSVNIKTGNYICHTTGKGGNI----KELDNFEF 59


>gi|256083880|ref|XP_002578163.1| lamin [Schistosoma mansoni]
 gi|238663524|emb|CAZ34401.1| lamin, putative [Schistosoma mansoni]
          Length = 2086

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/282 (10%), Positives = 84/282 (29%), Gaps = 26/282 (9%)

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE--IHLKNCINHIKDQK-LRYYYS 425
                 + E+    +                +         +++ +N IK +   R   +
Sbjct: 98  EERMSKVEEARKTYEDEITALRNLVDDLAKQKSKAELDSKQMRDELNDIKMKANKRDQEN 157

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + ++ +++ L ++       +  Y    + +   +   + + +    +  L      +  
Sbjct: 158 RNLQRKIENLERELSKYKQDHDAYQPLLSDYHVLEKRFEEMKRDLEAETLLRTDLENKIL 217

Query: 486 ALLLTLINHPAILQEQYQELADIRYD-----------------NNELQKLWSFLFSDFVE 528
            L   L     +  E+ ++L +                       EL+ +     S+  E
Sbjct: 218 GLKEQLDFRSRLFDEEREKLVERSLYIEEEVEGRKQAEYESRLTEELRSIRDQTASELEE 277

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            K  + E    +L     G+L    +    DA    +          +            
Sbjct: 278 YKIQMEETFESKL-----GQLKSSANFSAEDASRQRSELLIARKRADELSHDLSKKIAEL 332

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            LL R+  ++E+Q+A      E++        ++ +  ++ +
Sbjct: 333 ELLQRRVADLERQLADERKDFESQLLFQ-RQEVNRLKEELEE 373


>gi|260834823|ref|XP_002612409.1| hypothetical protein BRAFLDRAFT_218981 [Branchiostoma floridae]
 gi|229297786|gb|EEN68418.1| hypothetical protein BRAFLDRAFT_218981 [Branchiostoma floridae]
          Length = 195

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
              +E        +     E     LL++L   VR      A  + +  +V    +Q + 
Sbjct: 2   KHGLEDASPDVVSLVSHAAEERLRNLLEKLTVIVR--HRMEAYKDDSRYEVTGQVRQQVK 59

Query: 584 LYKRFRLLSR-----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ-IHQIESQEAM 637
             +    L +     Q+ E+  + A+  ++ E  +   L     E+  Q + +I +QEA 
Sbjct: 60  FLEELDRLEKKRHDEQEREMLLRAAKSRSRQEDPEQLKLKQKAKELQQQELEKIRNQEAN 119

Query: 638 IEGFGKMSGR 647
           +     +  R
Sbjct: 120 MTALMAIGPR 129


>gi|190344796|gb|EDK36551.2| hypothetical protein PGUG_00649 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1302

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 80/288 (27%), Gaps = 10/288 (3%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                R   +    +  + SL      +   TE        E   +   +K     + D  
Sbjct: 788  AEVSRIRKEIEVSQRELSSLEDSLTDYGSVTEQSPIELQREMDRINREMKALRQSVSDNV 847

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
               Y  Q    RL+   +      S   R        +      +  +          ++
Sbjct: 848  ESKYVKQRELARLEGRVKDKKLAISVLERALIDQEHEKVAIDGYEAQVVVLQQSMTEIEQ 907

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIH 538
                +         +   +  + +++   +    N   KL   +       K F      
Sbjct: 908  ELGIQREKRKEEEENLKRITVEIEKVEQEKEAEINRNHKLKDQVSDLLQNIKEFDD---V 964

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA------LALYKRFRLLS 592
             R+        +  ++  +    +  +  + ++  V +   +A      +     +R L 
Sbjct: 965  DRVKFETVSNDISTINSNIEKLEVEISKIQKDMKMVEKSINEANNLKSQIRDNLDYRRLQ 1024

Query: 593  RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             +  EIE QI  +  +    K         E+ ++I  + S+ A   G
Sbjct: 1025 NEMNEIENQIGMLDIEDAQSKRNEYNERTREIRLEITNLNSEHAGKVG 1072


>gi|301753032|ref|XP_002912412.1| PREDICTED: LOW QUALITY PROTEIN: myosin-XVIIIa-like, partial
            [Ailuropoda melanoleuca]
          Length = 2066

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1791 LQAQLEEANKQKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFER 1847

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1848 TQVKRLESLAGRLKENMEKLTEERDQRTAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1907


>gi|225682278|gb|EEH20562.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 787

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 87/223 (39%), Gaps = 18/223 (8%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                A+ +R+  L Q     H        + A  R+Q   +   ++ S  K K  ++ S
Sbjct: 430 KEIIDALVERINNLVQNLALIHEQVTGCENREAALRNQFNMTLHRLEQSNKKNKNLEEVS 489

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
               ++   +++    +Q+  QE+  +   +    +L S + S   + K    EE++ +L
Sbjct: 490 ---DSMAEDMMHIRMEMQKLGQEINVLE-TDKV--RLNSAIASYRADLKIL--EELNMKL 541

Query: 542 CERGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL----SRQK 595
            +     +  + +L+    +    +   + +I  + Q       + ++ + L    + + 
Sbjct: 542 EDDTIASMQKVAELENANSNLHSENMRAKEDIAKLEQNIIDQQRIREKMQKLLDKRTAEL 601

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
             +E +I Q+ ++ +    + L +       Q+  +  + ++I
Sbjct: 602 SSLESKIQQLKSEHDQAIASQLQNH----DKQLGAMNVRISLI 640


>gi|224062456|ref|XP_002198032.1| PREDICTED: myosin VC [Taeniopygia guttata]
          Length = 1740

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 79/240 (32%), Gaps = 20/240 (8%)

Query: 391  ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
            +         +A    +LK     I    ++ Y    +  RL QL          Y R +
Sbjct: 788  QYFRGQRTVRQAITARNLKQTWAAI---IIQKYCRGYLVRRLCQLIHVAAVTIQAYTRGF 844

Query: 451  KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
                ++R  +   + ++     +  L+++        +L +     +     Q    I  
Sbjct: 845  LARKKYRKMREEQKAVVLQKYARAWLARRRFQNIRRFVLNI----QLSYRVQQLQKKIEE 900

Query: 511  DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
             + E   L   L +           +  Q+L          +L++       +    +  
Sbjct: 901  QSRENHGLLERLTNLASAH--MNDVDTIQKLES--------ELEKLTAQKRTYEEKGKKY 950

Query: 571  IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
              D  Q   + L L  + + L  QKE +E ++ + T + + +   +   + ++V  + +Q
Sbjct: 951  KEDSEQ---KILKLENQNKELQEQKETLEIKLQEKTEEMKEKMDDLTQQLFNDVQKEENQ 1007



 Score = 38.3 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 45/390 (11%), Positives = 120/390 (30%), Gaps = 14/390 (3%)

Query: 249  YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
            Y        +++  R++         +      DV ++ +   +    +      E + +
Sbjct: 889  YRVQQLQKKIEEQSRENHGLLERLTNLASAHMNDVDTIQKLESELEKLTAQKRTYEEKGK 948

Query: 309  LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
               + S + +L  +  +  L+   + +++ L       +     L++    D       +
Sbjct: 949  KYKEDSEQKILKLENQNKELQEQKETLEIKLQEKTEEMKEKMDDLTQQLFNDVQKEENQR 1008

Query: 369  TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
               EK         +   +           ++    +   +  I     +      ++  
Sbjct: 1009 MILEKNFQNQKQDYEKEIELLKGEIKILKEEKNQLQQQIQQEIIIQDGLKMEVGQLTKQ- 1067

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
              ++ +L ++     +      K+    + +       +   L++    +    R     
Sbjct: 1068 AQKIPELQKEIELLQTQKLDVEKQAHSQKRELREKMSEVTKQLLESYDFEDVRSR----- 1122

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-RLCERGFG 547
               ++   +  E   E  ++ +    L+K    L S F  QK    +EI           
Sbjct: 1123 ---LSTEDL--EHLNEDGELWFAYEGLKKATRVLESHFQSQKEIYEKEIEGLNFKVEHLS 1177

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            + +  L +  R+    +      +  +         L ++   L  QK ++E ++ + T 
Sbjct: 1178 QDINHLQKLFREENDINDGIRLEVSRLTSENLVIPDLKQQVAELENQKLDLENRLQEQTM 1237

Query: 608  KGEAEKTAILISILH-EVHIQIHQIESQEA 636
            K    K   + + LH E+     Q  + EA
Sbjct: 1238 KL-KGKMEEMSNRLHYELERDKTQRRTTEA 1266


>gi|221485913|gb|EEE24183.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 3900

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 38/363 (10%), Positives = 104/363 (28%), Gaps = 21/363 (5%)

Query: 276  LVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAI 335
            L +   D   L     Q              L+             D  +      ++  
Sbjct: 1978 LAKAECDADRLLADRQQLQSEKATLEGQLASLQNSQHKCFEEQTRVDKQETAGTPCHELA 2037

Query: 336  DLVLCHLIPGNRVNFVLLS----RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391
                   +               + E  DS  +        +   E+  +   + +R  E
Sbjct: 2038 AATARGWMHAVEARNAFARFEEVQEECRDSAKKRQELAEELQRAKEAERMHWEMQQRLLE 2097

Query: 392  NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
                        L   L      ++++  +   +  +  ++ Q   + +           
Sbjct: 2098 EERRQHEAAVQNLRSDLLTGQRRLEEKLEQERSAHFLEQQILQQSSELLLLRLDSTERRL 2157

Query: 452  KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
            +N     ++   ++  +    + ++++     + A  +    H  + ++  +E      +
Sbjct: 2158 RNQEREARRLADEKRAEGETFRREVAQLTDGLQRAEAV----HAELRKQFEKE--RFELE 2211

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
            +   ++          E+     +E+     ER      +    + ++  + +   EA +
Sbjct: 2212 SEIARR------RHQAEEGLVRLKELEALGRERVERHEQELALAREQERSVLAEAFEAQL 2265

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             +  + Y+Q L L      L RQ+EE E+  ++        +   L     ++  Q    
Sbjct: 2266 REQEEVYRQHLEL-----ELQRQREEAERCFSREKKALMEAQEKALAERETQIESQREAQ 2320

Query: 632  ESQ 634
            E +
Sbjct: 2321 ERE 2323



 Score = 37.2 bits (84), Expect = 10.0,   Method: Composition-based stats.
 Identities = 35/347 (10%), Positives = 97/347 (27%), Gaps = 31/347 (8%)

Query: 303  TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
            TE + + L K    + +             + +D               +     D    
Sbjct: 2731 TEDRRKGLKKDFGEVEVVQVNLQGSEERLNEELDEQAKQHTMLQGEALEVSENSSDRHDN 2790

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-- 420
                 K   ++   E+      L   + ++        +      +      + + KL  
Sbjct: 2791 WEEDEKPDAQECEAETTLEKAKLADAKLKDECLEDEKVKEIKLEEISLEEEKLVEAKLAK 2850

Query: 421  -RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ-SSLVKGKLSK 478
             R    + +  +L     +   E        +     + ++   +  ++   L   + + 
Sbjct: 2851 TREELQRQLNAKLAMKEMELRAELQEELERHRLYFAAKVREKEREAEIRLQRLRDARRAS 2910

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                R   L         +  +  + L            L S L       +  L     
Sbjct: 2911 AEQARSRQL--------QLEHQLQELLDRES-------MLRSELDRHHRSAEEPLNGFWT 2955

Query: 539  QRLCERGF--GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ--------ALALYKRF 588
            + L +      E  +  +++  +    +      + D  +  +         A+ +++  
Sbjct: 2956 EPLAQPELMHKEKFRSEEQENFEWPEEAQALHQKLKDALEREKHLREAADAGAVRMHETE 3015

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
              L   +EE++   A++  K E +   +    L    +Q+++ ++ E
Sbjct: 3016 DALRLCQEELKD--ARLHLKEEQDALRLCQQELEATRLQLNKGQNNE 3060


>gi|125974362|ref|YP_001038272.1| peptidase M23B [Clostridium thermocellum ATCC 27405]
 gi|256005559|ref|ZP_05430519.1| Peptidase M23 [Clostridium thermocellum DSM 2360]
 gi|281418909|ref|ZP_06249927.1| Peptidase M23 [Clostridium thermocellum JW20]
 gi|125714587|gb|ABN53079.1| peptidase M23B [Clostridium thermocellum ATCC 27405]
 gi|255990467|gb|EEU00589.1| Peptidase M23 [Clostridium thermocellum DSM 2360]
 gi|281407366|gb|EFB37626.1| Peptidase M23 [Clostridium thermocellum JW20]
 gi|316941520|gb|ADU75554.1| Peptidase M23 [Clostridium thermocellum DSM 1313]
          Length = 375

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 79/224 (35%), Gaps = 19/224 (8%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
             +       E +          + + ++      ++S   K +  +    RE     +L
Sbjct: 23  FAKTISDVQKEKNTVDSKLNSITKQKKEEKQKLSNIESEKKKIESQQAEKTREYN---SL 79

Query: 492 INHPAILQEQYQEL-----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
                 L +  +E+           N +L+ L   +   +        + +      + F
Sbjct: 80  NQQVEELNKHIEEIDAAIKESEDRYNKQLELLKVRINVMYQNSGATYIQTLA---ESKNF 136

Query: 547 GELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
            + L +L+              +         +++ LA+ KR  +  + ++ ++  + ++
Sbjct: 137 IDFLNKLELVAAISKRDKEIIEDLKQAKADVEFKKKLAVEKRDTVKEKAEQSLK-ALNEL 195

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQE-AMIEGFGKMSGRL 648
           +          L S ++ ++ Q+ ++E QE  +I+   +++G++
Sbjct: 196 SVARSK-----LDSQINSINAQLKKLEQQENELIKQSNELAGQI 234


>gi|109090458|ref|XP_001113681.1| PREDICTED: alpha-internexin-like isoform 3 [Macaca mulatta]
          Length = 499

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/316 (9%), Positives = 82/316 (25%), Gaps = 34/316 (10%)

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           G        S G D         +    +   +               +      +   L
Sbjct: 63  GLAYRRPPASEGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRAL 122

Query: 405 EIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           E  L        +   +   + + +RD   QL +              ++    + +   
Sbjct: 123 EAELAALRQRHAEPSRVGELFQRELRDLRAQLEEASSARAQALLE---RDGLAEEVQRLR 179

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD----NNELQKLW 519
            R  + S  +    +    ++  +    +    + ++    L ++ +     + E+ +L 
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTE--------A 569
           + L +                L           + L  +   +      ++        A
Sbjct: 240 ATLQASSQAAAEVDVAVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299

Query: 570 NIVDVRQGYQQALALYKRF---------------RLLSRQKEEIEKQIAQVTAKGEAEKT 614
              +  +  ++ +  Y+R                  L RQ  E+E++       G  +  
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEER-HSAEVAGYQDSI 358

Query: 615 AILISILHEVHIQIHQ 630
             L + L     ++ +
Sbjct: 359 GQLENDLRNTKSEMAR 374


>gi|49117916|gb|AAH72844.1| LOC443585 protein [Xenopus laevis]
          Length = 1388

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 89/270 (32%), Gaps = 24/270 (8%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                 Y +   EK I+      +     E E        ++ ELE  L +  + +++++ 
Sbjct: 884  EMANKYQQLLEEKSILAEQLQAETELFAEAEEMRSRLSSKKQELEDILHDLESRVEEEEE 943

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    Q  + ++ Q  Q    +        +K    +       + M+ +++  +     
Sbjct: 944  RTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESKLKKMEENILLLEDQNAK 1003

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              +E  LL         + +    +A+       L KL +            +  ++  R
Sbjct: 1004 LAKERKLL------DERISDFTSTMAEEEEKVKSLNKLRNKY--------EAVIADLEDR 1049

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            L +   G              +             Q  +    + +  + L+R++EE++ 
Sbjct: 1050 LKKEEKGRQ--------EMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQA 1101

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             +A++    E  +   L+  L ++  Q+ +
Sbjct: 1102 ALARIDD--EVGQKNNLLKQLRDLQSQLAE 1129


>gi|118371349|ref|XP_001018874.1| hypothetical protein TTHERM_00463770 [Tetrahymena thermophila]
 gi|89300641|gb|EAR98629.1| hypothetical protein TTHERM_00463770 [Tetrahymena thermophila SB210]
          Length = 2269

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 53/154 (34%), Gaps = 18/154 (11%)

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE------LLKQ 552
            +E    L  I     E + L   +     +      +   Q+L E    E      L  Q
Sbjct: 919  REVRDLLTQIDQLKEEKEDLIQQIKEKQSKIDELQSDSSMQKLEEEYDEENSNKTELQVQ 978

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK---- 608
            +D  V+                +   ++     K+   L ++  E E++I+Q+  K    
Sbjct: 979  IDNLVKQKSRVEIENNYYKDTYKNVEKEFKKSVKQNDELKKKLAEAEQKISQLEKKVPKE 1038

Query: 609  --------GEAEKTAILISILHEVHIQIHQIESQ 634
                     + +  +   + ++E+  Q+ +++++
Sbjct: 1039 DQEEGDEEEQQQIESSAQAEINELKQQLEKVKNE 1072


>gi|50838836|ref|NP_001001302.1| myosin-7 [Gallus gallus]
 gi|14017756|dbj|BAB47399.1| chick atrial myosin heavy chain [Gallus gallus]
          Length = 1931

 Score = 39.5 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 81/238 (34%), Gaps = 19/238 (7%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             ++ +++    +   + S   R   +  +         +  Q  L    +     L+E  
Sbjct: 1608 RLKKKMEGDLNEMEIQLSHANRTAAEAQKQVKALQGYLKDTQLQLDDV-VRANEDLKEN- 1665

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERG 545
             +  +     +LQ + +EL  +   +   +KL    L       +    +       ++ 
Sbjct: 1666 -IAIVERRNNLLQSELEELRAMVEQSERARKLAEQELIEASERVQLLHSQNTSLINQKKK 1724

Query: 546  FGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQALALYKRFRLLSRQ 594
                + QL  +V +A       E               ++++    +  L +  + + + 
Sbjct: 1725 MEADISQLQTEVEEAIQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQT 1784

Query: 595  KEEIEKQIAQVTA---KGEAEKTAILISILHEVHIQIHQIESQEA-MIEGFGKMSGRL 648
             ++++ ++ +      KG  ++   L   + E+  ++   + + A  I+G  K   R+
Sbjct: 1785 VKDLQLRLDEAEQLALKGGKKQLQKLEVRVRELENELEAEQKRNAESIKGLRKSERRV 1842


>gi|326427236|gb|EGD72806.1| hypothetical protein PTSG_04533 [Salpingoeca sp. ATCC 50818]
          Length = 656

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 47/114 (41%), Gaps = 7/114 (6%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            ++  E      +E+ Q L E      L +L  Q +              +  +  ++  
Sbjct: 48  LAEQHEAMVHEKDELVQSLEEE-----LHRLKGQAKQHAAEQEYVTDLEAENERIRRECD 102

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIESQ 634
           +  K+    +++++E++ +IA++        ++  +L + + +   +I ++E Q
Sbjct: 103 SWLKKAEAAAKERKELKDEIARLRNAETDADDRARVLEAKIKQQEARIQELEEQ 156


>gi|323650090|gb|ADX97131.1| eukaryotic translation initiation factor 3 subunit a [Perca
           flavescens]
          Length = 359

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 79/239 (33%), Gaps = 25/239 (10%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             + ++  +++R   +       + +                + A     K   +   + 
Sbjct: 107 PFLQNMPSEQIRNQLTAMSASLAKAIQVIRPASILQEREEQNQLAIAAYLKNARKDHQRI 166

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF-VE 528
              +  + ++    E+                 +E  ++     E+QK+          E
Sbjct: 167 LARRQTIEERKERLESL-------------NIQREKEELEQREAEMQKVRKAEEERLRQE 213

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            K    E I Q   +     + ++L++  +      A  + +I D+ +       + K+ 
Sbjct: 214 AKEREKERIMQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEE-LDPDFIMAKQV 272

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI----------QIHQIESQEAM 637
             L ++K+E+++++     K +  + A  +  +  +            ++ +++ +E +
Sbjct: 273 EQLEKEKKELQERLKNQEKKIDYFERAKRLEEIPLIKKAYEEQRVKDMELWELQEEERI 331


>gi|296222230|ref|XP_002757099.1| PREDICTED: ralA-binding protein 1 [Callithrix jacchus]
          Length = 655

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 76/257 (29%), Gaps = 35/257 (13%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-----QAIRDRLQQLFQKYI--- 440
             +  +             L      IK++  R  +      + ++  ++ L ++     
Sbjct: 372 ILKQVTKPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGIKDLSKEERLWE 431

Query: 441 -TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
                   +   + A+ ++ +    + + S   +    ++ +  E  + + L     IL 
Sbjct: 432 VQRILTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVINILLAQENEILT 491

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           EQ + LA  ++       L   + S                  +     L  ++      
Sbjct: 492 EQEELLAMEQF-------LRRQIAS-----------------EKEEIERLRAEIAEIQSR 527

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAIL 617
                + TE    +     +    L      L RQ EE+E +   +      E E    L
Sbjct: 528 QQHGRSETEEYSSESESESEDEEELQIILEDLQRQNEELEIKNNHLNQAIHEEREAIIEL 587

Query: 618 ISILHEVHIQIHQIESQ 634
              L  + +Q  + + Q
Sbjct: 588 RVQLRLLQMQRAKADQQ 604


>gi|270002051|gb|EEZ98498.1| hypothetical protein TcasGA2_TC000998 [Tribolium castaneum]
          Length = 608

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 4/110 (3%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                +++  +  E    +  ++   Q+  A    A  +    + R    Q      +  
Sbjct: 339 DTIDVQQMKAQAREEKLAKQQQREKLQLEIAARERAEKKQQEYEDRIKAMQEEMERSQAN 398

Query: 590 LLSRQ--KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           LL  Q     +E+Q+ Q+ A    E+     + L  +  ++ + ++ EA 
Sbjct: 399 LLEAQEMIRRLEEQLKQLQAA--KEELEKRQNELQAMMERLEESKNMEAA 446


>gi|259483061|tpe|CBF78122.1| TPA: structural maintenance of chromosome complex subunit SmcA
           (AFU_orthologue; AFUA_6G02700) [Aspergillus nidulans
           FGSC A4]
          Length = 1185

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 42/340 (12%), Positives = 107/340 (31%), Gaps = 31/340 (9%)

Query: 340 CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI-----VESLPLVDMLWKRETENRS 394
           C +  G     V L R +D   F++   + A  ++        S   V     +   N+S
Sbjct: 157 CAICLGLGWGPVHLGRAKDIGEFVKHGCREATIEIELARGPKHSRNPVVTRIIKREGNKS 216

Query: 395 FNTPDERAELEIHLKNCINHIKD----------QKLRYYYSQAIRD-----RLQQLFQKY 439
               + +    I + N    +                 + +Q          L +  ++ 
Sbjct: 217 SFMLNGKQSFAIQVDNLCQFLPQDKVSEFAALTPVELLHSTQRAAAGAEMVELHENLKRL 276

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLTLINHPAI 497
             E        + +          Q + ++   + +   + + R   L  +  L+ +  +
Sbjct: 277 RAEQKKLQSNNQSDKDLLANLENRQEMQRADFERVRQRAQIARRIELLQTVRPLVLYRHL 336

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           +++      +      EL+ L + L       +      +      +     L++ DR  
Sbjct: 337 VEQGKALKEERNVSQRELEVLEAQLKPVMRSSEQKKEYCMQLEAVVKHKQRALERADRMA 396

Query: 558 RDAGLWSATTEANIVDVRQGY----QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            D        E N+ ++        + A+   +    +++  + + +Q+     + +A+ 
Sbjct: 397 TDLNRKVEQYEQNMKELDAEIEAEKKSAVKSRQEGAKIAQTIKTLTRQLQDNPVEFDADW 456

Query: 614 TAILI----SILHEVHIQIHQI-ESQEAMIEGFGKMSGRL 648
               I      + E+  +  +I E +  + E F +   RL
Sbjct: 457 YNEQIRDKRREIREIENRAKEINERKRQLHEKFNETGDRL 496


>gi|240279359|gb|EER42864.1| M protein repeat protein [Ajellomyces capsulatus H143]
          Length = 862

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/271 (9%), Positives = 74/271 (27%), Gaps = 28/271 (10%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKLRYYYSQAIRDR 431
           +L  +  P    +   + E          +    +           +     Y +A+   
Sbjct: 162 RLDADEKPNGSHIEDDQRETSPSGDGHVISRAVENSVPKIGVTEPTETSTDDYEEAMAQM 221

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
                   +        Y ++    + +     +    S      S +    E  LL   
Sbjct: 222 RADHEMSELRWQEELHAYVERIDALQSKLKYLAKEAAESAKNAAASAEAGSLEKKLLE-- 279

Query: 492 INHPAILQEQYQ--ELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                I     +  +L+    D+   ++KL   +      Q                  +
Sbjct: 280 -KDEQIANLMEEGQKLSKTELDHRATIKKLRQSIAESAKSQ--------------AETKK 324

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-------KEEIEKQ 601
            L+++++ + +A    +  E       +         K+    + +         +++ Q
Sbjct: 325 RLEKVEKDLVNAEDRVSQAEIAEQKALERLNSVSKAEKQLETATAEREASNATITDLKSQ 384

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +A+  ++ EA +    +        QI ++ 
Sbjct: 385 LARAVSRAEAAERKARMEATEAEKRQIAELR 415


>gi|194767157|ref|XP_001965685.1| GF22627 [Drosophila ananassae]
 gi|190619676|gb|EDV35200.1| GF22627 [Drosophila ananassae]
          Length = 1385

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 4/118 (3%)

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW-SATTEANIVDVRQGYQQ 580
           +F   + Q     ++      ++      +++            A  E +  +  +  Q+
Sbjct: 636 MFRFVLPQPTRQAQQERAAFEDQQRQAERRRVAELEARQRAEADAQRERDRQEKMRQLQE 695

Query: 581 ALALYKRFRLLSRQKE---EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           A  L +R + L RQ +   E+EKQ     A+ +AEK   L         +  + E +E
Sbjct: 696 AEELNRRQQELQRQLKEQQELEKQRRLELARIKAEKEEQLRQERLRQEREQREKEQRE 753


>gi|55742222|ref|NP_001006805.1| myosin, heavy chain 2, skeletal muscle, adult [Xenopus (Silurana)
            tropicalis]
 gi|50368680|gb|AAH76678.1| myosin, heavy polypeptide 13, skeletal muscle [Xenopus (Silurana)
            tropicalis]
          Length = 1939

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 72/219 (32%), Gaps = 26/219 (11%)

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGK 475
            D   R    +  + +L Q  Q+   +               +  +   + LM        
Sbjct: 1381 DAIQRTEELEEAKKKLAQRLQEAEEQVEAVNSKCASLEKTKQRLQAEVEDLMVDVERANS 1440

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
             +     ++      L+      Q+  +  A++     E + L + +F      +  L  
Sbjct: 1441 AAAALDKKQRNFDKVLV---EWKQKYEESQAELEASQKESRSLSTEIFKMKNAYEEALEH 1497

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                +   +   + +  L  Q+ ++                  +  + L K  + + +++
Sbjct: 1498 LETMKRENKNLQQEISDLSEQIGESA-----------------KTTMELEKAKKQVEQER 1540

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             +++  + +     E E+     + +  + ++++Q++S+
Sbjct: 1541 GDLQAALEEAEGSLEHEE-----AKILRIQLELNQVKSE 1574



 Score = 38.3 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 53/450 (11%), Positives = 134/450 (29%), Gaps = 38/450 (8%)

Query: 225  LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284
            L+  +  K  ++ E  + +  + +      ++ + K  +     +  +   L      V 
Sbjct: 962  LTLAKVEKEKHATENKVKNLTEEMAGLDETISKISKEKKALQEAHQQTLDDLQAEEDKVS 1021

Query: 285  SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL--VLCHL 342
            SL +A  +          +  Q + L     R     +GD    +     ++        
Sbjct: 1022 SLSKAKTKLEQQVDDLEGSLEQEKKLRLDLERAKRKLEGDLKLAQETIMDLENDKQQTEE 1081

Query: 343  IPGNRVNFVLLSRGE--DPDSFIRC--------YGKTAFEKLIVESLPLVDMLWKRETEN 392
                +   +   +G+  D  S              +    +  +E+        +++  +
Sbjct: 1082 KLKKKDFELSQLQGKIEDEQSVGCQLQKKIKELQARIEEVEEEIEAERAARAKVEKQRAD 1141

Query: 393  RSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452
             S    +    LE         I+  K R       +   + L +  +   +      KK
Sbjct: 1142 LSRELEEISERLEEAGGATSAQIEMNKKREA---EFQKLRRDLEESTLQHEATSAALRKK 1198

Query: 453  NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH--------PAILQEQYQE 504
            +A    + G     +Q    K +  K     E   L + + +          + +    +
Sbjct: 1199 HADSVAELGEQIDNLQRVKQKLEKEKSELKMEIDDLASNLENVSKSKANLEKLSRVLEDQ 1258

Query: 505  LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
            L++I+  ++E Q++ + L +     +    E   Q   +      L +  +         
Sbjct: 1259 LSEIKSRDDEHQRIINDLTAQKARLQTENGELSRQLEEKESLVSQLTRGKQGFTQQTEEL 1318

Query: 565  ATTEANIVDVRQGYQQALALYKRFRLLSRQK----EEIEKQIAQVTAKGEAEKTA----- 615
                      +     AL   +    L R++    +E + ++ +  +K   E +      
Sbjct: 1319 KRQLEEETKAKNALAHALQSSRHDCDLLREQYEEEQEAKAELQRSLSKANTEVSQWRTKY 1378

Query: 616  -----ILISILHEVHIQI-HQIESQEAMIE 639
                      L E   ++  +++  E  +E
Sbjct: 1379 ETDAIQRTEELEEAKKKLAQRLQEAEEQVE 1408


>gi|1335781|gb|AAC47078.1| Cap [Drosophila melanogaster]
          Length = 1231

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 79/229 (34%), Gaps = 15/229 (6%)

Query: 413 NHIKDQKLRYYYSQAIRD---RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
           + ++ QK R  Y+  I +   +L +L  +  +  +       +  +   ++G S+ + + 
Sbjct: 706 SRLEMQKKRTEYTSQIAEFEKKLSKLRNELKSTENNINSIVSEMQKTETKQGKSKDVFEK 765

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              + +L K+  +R            ++ Q +    +     ++   +L   L S    Q
Sbjct: 766 VQGEIRLMKEELVRIEQ--YRAPKERSLAQCKASLESMTSTKSSLEAELKQELMSTLSSQ 823

Query: 530 KYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----- 582
                ++++  +    +   E   Q  +              N+   R    QAL     
Sbjct: 824 DQREIDQLNDDIRRLNQENKEAFTQRMQFEVRKNKLDNLLINNLFRRRDELIQALQEISV 883

Query: 583 -ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               ++      +    EK+I +V +  + E+    +    ++  ++ Q
Sbjct: 884 EDRKRKLNNCKTELVSAEKRIKKVNS--DLEEIEKRVMEAVQLQKELQQ 930


>gi|326928788|ref|XP_003210556.1| PREDICTED: transcription elongation regulator 1-like [Meleagris
           gallopavo]
          Length = 933

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 32/353 (9%), Positives = 109/353 (30%), Gaps = 41/353 (11%)

Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358
            T +      ++W    R+      +     + +   D ++        +      +G +
Sbjct: 410 TTPIPGTPWCVVWTGDERVFFY---NPTTRLSMWDRPDDLIGRADVDKIIQEPPHKKGME 466

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
               +      + E+   +  P+     K++      +  +   E EI        +  +
Sbjct: 467 EGKKLIREEHESIEEANED-EPIKIKKRKKDDNKDIDSEKEAAMEAEIKAARERAIVPLE 525

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                +   + +R        + +     R  ++    +++   ++   +  + + K++ 
Sbjct: 526 ARMKQFKDMLLER-------GVFDQYVKTRAEEERKEKKNKIMQAKEDFKKMMEESKINP 578

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           + +  E A              +++ +  +     + + L++   +   +++    +   
Sbjct: 579 RTTFSEFAA-------KHAKDSRFKAIEKM----KDREALFNEFIAAARKKEKEDSKTRG 627

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQALALYK- 586
           +++    F  L                  E +             D+ + Y + +A    
Sbjct: 628 EKIKMDFFELLANHHLDSQSRWSKVKDKVETDPRYKAVDSSSQREDLFKQYIEKIAKNLD 687

Query: 587 --RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
             + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 688 SEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 735


>gi|316971212|gb|EFV55023.1| putative myosin head [Trichinella spiralis]
          Length = 1926

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 94/252 (37%), Gaps = 16/252 (6%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            +E +      ++++LE  + +  + + +Q+ R    Q  + +++   +    +       
Sbjct: 870  SEEKIQKLTSQKSDLERQVNDLSDRLNNQEERGAELQKAKKKVESECENLNRKIQDLELS 929

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
             +K    +  +    R +Q  +           +E        +   + ++  ++L    
Sbjct: 930  LRKAESEKQSRDNQIRSLQDEMTSQDELAGKLNKEKK------HQEEVNRKLMEDLQSEE 983

Query: 510  YDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
               N L KL S L     + +     E+  ++  E+G  ++   +     +    +    
Sbjct: 984  DKVNHLNKLKSKLEQQLDDLEDSLEREKRARQDVEKGKRKVEGDIRVAHENIDEINKQKH 1043

Query: 569  ANIVDVRQGYQQALALYKRFRL-------LSRQKEEIEKQIAQVTAKGEAEKTAILISI- 620
                ++++  Q+  AL  +          + RQ +E++ +I ++  + E E+ A   S  
Sbjct: 1044 DLESNLKKKEQEMQALSSKLEDEQGLVAKMQRQIKELQTRIQELEEELEQERQARSKSEK 1103

Query: 621  -LHEVHIQIHQI 631
              +++  Q+ ++
Sbjct: 1104 VRNDLQRQLEEL 1115



 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 75/238 (31%), Gaps = 19/238 (7%)

Query: 406  IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
               ++    +++   R    + + +RL +       +     +   + A+ R     +  
Sbjct: 1095 RQARSKSEKVRNDLQRQ--LEELSERLDEAGGATQAQLEMNKKREAELAKLRRDLEEANM 1152

Query: 466  LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
              +  L   +     ++ E +           L +  +  A    +    Q+    L + 
Sbjct: 1153 NHEGQLASLRKKHNDAVAEMS---------DQLDQVQKAKAKSDKEKVAYQRELEDLHAA 1203

Query: 526  FVEQKYF--LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
              ++       +   ++L  +   EL  + D Q R    ++        +     +Q   
Sbjct: 1204 MDQENKAKQDADRFSKQLELQ-MAELQAKNDEQTRQLHDYTNMKNRINSENADLMRQLED 1262

Query: 584  LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQ---IHQIESQEA 636
               +   L+R K + + Q+ +     + E      L + L  +  +   + +   +EA
Sbjct: 1263 AESQLNSLNRLKSQYQTQLEEAKRTADEETRERHNLAAQLKNMEHENQSLREQLEEEA 1320


>gi|262197000|ref|YP_003268209.1| hypotheticalprotein [Haliangium ochraceum DSM 14365]
 gi|262080347|gb|ACY16316.1| TPR repeat-containing protein [Haliangium ochraceum DSM 14365]
          Length = 3936

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 72/237 (30%), Gaps = 26/237 (10%)

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               ++ +   + + F   +              R  +     +   +   V+       S
Sbjct: 2663 ETLAETLAAGVAEEFDPDLLALVWSRIAEIHEERRGEPARAIEAWRKVLEVRDDDDAALS 2722

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR- 540
              +  LL+    +  +++   ++ A++  D    +     + + + E      E I    
Sbjct: 2723 ALDRLLLMEA-RYEELVR-VVEKRANLAQDEGTRRVFLHRIAALYEEDLEQRGEAIAAYK 2780

Query: 541  --LCERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL---SRQ 594
              L E     + L  L+R  R+   W          + Q  ++      R        RQ
Sbjct: 2781 NVLTEAPGDPVALDALERLYREESDWHELVAVLQQKIEQAQERTQRRELRLAAADVYERQ 2840

Query: 595  KEEIEKQIAQVTAKGEAE-----------------KTAILISILHEVHIQIHQIESQ 634
             E+I + +A + A  + E                 ++      L ++  +   +ES+
Sbjct: 2841 LEDIYEAMAMLRAILDPEDGDPEDGEALARLDVLYQSESAWPDLIDILDRRAALESE 2897


>gi|323340517|ref|ZP_08080772.1| hypothetical protein HMPREF0542_11203 [Lactobacillus ruminis ATCC
           25644]
 gi|323092061|gb|EFZ34678.1| hypothetical protein HMPREF0542_11203 [Lactobacillus ruminis ATCC
           25644]
          Length = 370

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 50/140 (35%), Gaps = 8/140 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
           A+L++   E A +   N + + L        +       ++    L +R        L++
Sbjct: 72  ALLKKNQAEEAVLEKKNADAEALKKADNIKKINNFQKDAQKKLDDLKQR----QAADLEK 127

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
              +     A  +  I ++ +          R   L+ + E+ +K +     K E +  A
Sbjct: 128 ATSEHDEKVAELKKEIEELDKDASDY---QDRLAELNEKIEQADKDLQDFKQKQEDD-YA 183

Query: 616 ILISILHEVHIQIHQIESQE 635
            L   L +   Q+ Q  ++E
Sbjct: 184 KLAQELADQQKQLEQRLAEE 203


>gi|237834995|ref|XP_002366795.1| hypothetical protein TGME49_042750 [Toxoplasma gondii ME49]
 gi|211964459|gb|EEA99654.1| hypothetical protein TGME49_042750 [Toxoplasma gondii ME49]
 gi|221503725|gb|EEE29409.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 3900

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 38/363 (10%), Positives = 104/363 (28%), Gaps = 21/363 (5%)

Query: 276  LVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAI 335
            L +   D   L     Q              L+             D  +      ++  
Sbjct: 1978 LAKAECDADRLLADRQQLQSEKATLEGQLASLQNSQHKCFEEQTRVDKQETAGTPCHELA 2037

Query: 336  DLVLCHLIPGNRVNFVLLS----RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391
                   +               + E  DS  +        +   E+  +   + +R  E
Sbjct: 2038 AATARGWMHAVEARNAFARFEEVQEECRDSAKKRQELAEELQRAKEAERMHWEMQQRLLE 2097

Query: 392  NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
                        L   L      ++++  +   +  +  ++ Q   + +           
Sbjct: 2098 EERRQHEAAVQNLRSDLLTGQRRLEEKLEQERSAHFLEQQILQQSSELLLLRLDSTERRL 2157

Query: 452  KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511
            +N     ++   ++  +    + ++++     + A  +    H  + ++  +E      +
Sbjct: 2158 RNQEREARRLADEKRAEGETFRREVAQLTDGLQRAEAV----HAELRKQFEKE--RFELE 2211

Query: 512  NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
            +   ++          E+     +E+     ER      +    + ++  + +   EA +
Sbjct: 2212 SEIARR------RHQAEEGLVRLKELEALGRERVERHEQELALAREQERSVLAEAFEAQL 2265

Query: 572  VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             +  + Y+Q L L      L RQ+EE E+  ++        +   L     ++  Q    
Sbjct: 2266 REQEEVYRQHLEL-----ELHRQREEAERCFSREKKALMEAQEKALAERETQIESQREAQ 2320

Query: 632  ESQ 634
            E +
Sbjct: 2321 ERE 2323



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 34/347 (9%), Positives = 98/347 (28%), Gaps = 31/347 (8%)

Query: 303  TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
            TE + + L K    + +             + +D               +     D    
Sbjct: 2731 TEDRRKGLKKDFGEVEVVEVSLQGSEERLNEELDEQAKQHTMLQGEALEVSENSSDRHDN 2790

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-- 420
                 K   ++   E+      L   + ++        +      +      + + KL  
Sbjct: 2791 WEEDEKPDAQECEAETTLEKAKLADAKLKDECLEDEKVKEIKLEEISLEEEKLVEAKLAK 2850

Query: 421  -RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ-SSLVKGKLSK 478
             R    + +  +L     +   +        +     + ++   +  ++   L   + + 
Sbjct: 2851 TREELQRQLNAKLAMKEMELRADLQEELERHRLYFAAKVREKEREAEIRLQRLRDARRAS 2910

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                R   L         +  +  + L            L S L       +  L     
Sbjct: 2911 AEQARSRQL--------QLEHQLQELLDRES-------MLRSELDRHHRSAEEPLNGFWT 2955

Query: 539  QRLCERGF--GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ--------ALALYKRF 588
            ++L +      E  +  +++  +    +      + D  +  +         A+ +++  
Sbjct: 2956 EQLAQPELMHKEKFRSEEQENFEWPEEAQALHQKLKDALEREKHLREAADAGAVRMHETE 3015

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
              L   +EE++   A++  K E +   +    L    +Q+++ ++ E
Sbjct: 3016 DALRLCQEELKD--ARLHLKEEQDALRLCQQELEATRLQLNKGQNNE 3060


>gi|167382230|ref|XP_001736019.1| alpha-actinin-2 [Entamoeba dispar SAW760]
 gi|165901711|gb|EDR27752.1| alpha-actinin-2, putative [Entamoeba dispar SAW760]
          Length = 710

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 64/192 (33%), Gaps = 5/192 (2%)

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI-RYD 511
           + +    K  +  +++ +  + +   + + R  AL   LI     +Q+   +L +     
Sbjct: 405 DTKKVISKNETDSVLEKTQQEIQKEVEQNKRIEALQSLLITKEQEIQKIKLDLTNEKNLH 464

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG----FGELLKQLDRQVRDAGLWSATT 567
           + E +K    + +              +R           E ++ L R+V   G      
Sbjct: 465 DTEKKKKEEEVLTLKKSLDEIKKSHEIERESNDKEIKLQKEEIQSLKREVFVLGESKGDE 524

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
              + ++ +     +   +    L  +  + E +  ++  K + E+   L   L  +   
Sbjct: 525 VKKMKELMEEKNDEITRLRDQHDLEIKALKKESETKELEKKTKDEEILKLKQELSTLRES 584

Query: 628 IHQIESQEAMIE 639
           +     Q  +IE
Sbjct: 585 LETERKQRELIE 596


>gi|163941586|ref|YP_001646470.1| chromosome segregation protein SMC [Bacillus weihenstephanensis
           KBAB4]
 gi|229013031|ref|ZP_04170196.1| Chromosome partition protein smc [Bacillus mycoides DSM 2048]
 gi|229168587|ref|ZP_04296310.1| Chromosome partition protein smc [Bacillus cereus AH621]
 gi|163863783|gb|ABY44842.1| chromosome segregation protein SMC [Bacillus weihenstephanensis
           KBAB4]
 gi|228614993|gb|EEK72095.1| Chromosome partition protein smc [Bacillus cereus AH621]
 gi|228748285|gb|EEL98145.1| Chromosome partition protein smc [Bacillus mycoides DSM 2048]
          Length = 1189

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 53/141 (37%), Gaps = 4/141 (2%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           +E  +    ++  +  +  L   L     E +    +    +  ++       QL++ + 
Sbjct: 267 EELEELRGQLQAVDESVNSLQEVLLLSSKELEKLEGQRELLKERKQNATTHCAQLEKLIV 326

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
           +    + + +  I    +   Q +    + + L ++  + E+ +A   A+   E+   L 
Sbjct: 327 ELTEKTTSYDGEIETSTEALMQFVN---QVKELEKKLHDNEQLLATF-AENLEEQIENLK 382

Query: 619 SILHEVHIQIHQIESQEAMIE 639
               E+  Q   + ++ +MIE
Sbjct: 383 GDYIELLNQQASLRNELSMIE 403


>gi|146282218|ref|YP_001172371.1| chromosome segregation SMC protein, putative [Pseudomonas stutzeri
           A1501]
 gi|145570423|gb|ABP79529.1| chromosome segregation SMC protein, putative [Pseudomonas stutzeri
           A1501]
          Length = 1162

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 2/103 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELER 203

Query: 601 QIAQVTAKG-EAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           Q+ ++  +   AEK     +   ++  Q+  +  Q A+ E  G
Sbjct: 204 QLERLHRQAQSAEKYQEYKAEERQLKAQLSALRWQ-ALNEQVG 245



 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 26/262 (9%), Positives = 81/262 (30%), Gaps = 26/262 (9%)

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
             DER      +++ +  +  ++ R    + ++ R QQ   +  ++              
Sbjct: 662 ERDEREASLAAMEDRVTALSGEQSRLEGERELQRRQQQEEARKHSDLKARLSAGHARLEQ 721

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAAL-----LLTLINHPAI----------LQEQ 501
              +        +   + +  +   L EA L     L T+                ++E+
Sbjct: 722 LALRRRRLEEELAEQQEQREIETEQLGEARLQLQEALETMAQDTEQRETLLASRDGIRER 781

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
              +      + +     +        Q     + + +RL ++ F   +++ ++   +  
Sbjct: 782 LDRIRQDARQHKDHAHQLALRVGSLRAQHESTRQAL-ERLEQQ-FERAVERREQLTLNLE 839

Query: 562 LWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
              A  E   + + +  ++ +                 R+  + EK+  Q   + +  + 
Sbjct: 840 EGEAPLEELRMKLEELLERRMGVEDELKHARLALEDADRELRDAEKRRTQAEQQAQLLRG 899

Query: 615 AILISIL--HEVHIQIHQIESQ 634
            +    L    + ++   ++ Q
Sbjct: 900 QLEQQRLDWQGLSVRRKALQDQ 921


>gi|115712094|ref|XP_784795.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115950309|ref|XP_001185350.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 1279

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 91/284 (32%), Gaps = 21/284 (7%)

Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
           G+D             +K   +S      L  +E +        E+  L+ +        
Sbjct: 476 GKDVADLRS-------QKNEADSDNQRLSLEIKELKADIKPLLSEKERLKCYSMELEKKF 528

Query: 416 KDQKLR-YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP----SQRLMQSS 470
            D   R  + ++ + +  +Q  +             K   R  + K        +  Q+ 
Sbjct: 529 LDTTDRLSHLTEDVANLQRQTNEADSENQELEENNAKTEDRLTELKKEFVDLQSQKNQTE 588

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
               +LS + S R+A +   L     +              N E ++    L   F ++K
Sbjct: 589 AENQRLSDEVSQRQANIEQLLAEKEQLESNSEVLKDQFESSNEEGKR-RQALTRQFSDEK 647

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                ++ + L +        +      + G      E     V++  QQ   L +R   
Sbjct: 648 ----SQLSKHLEDARQKCQELEEKLSAEEQGKEQQQNEELTAQVKKAQQQYQDLNERSAS 703

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              +  +  K++A+  AK +     +L + L E   Q+ +++ +
Sbjct: 704 ELEEMTKARKELAERAAKEKD----VLTAELAEARKQLEELKDE 743


>gi|331015923|gb|EGH95979.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 1162

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELER 203

Query: 601 QIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           Q+ ++  + + AEK     +   ++  Q+  +  Q A+ E  G
Sbjct: 204 QLERLHRQAQAAEKYQEYKAEERQLKAQLSALRWQ-ALNEQVG 245


>gi|330960231|gb|EGH60491.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 1162

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELER 203

Query: 601 QIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           Q+ ++  + + AEK     +   ++  Q+  +  Q A+ E  G
Sbjct: 204 QLERLHRQAQAAEKYQEYKAEERQLKAQLSALRWQ-ALNEQVG 245


>gi|323349112|gb|EGA83343.1| Spc110p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 843

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 72/218 (33%), Gaps = 12/218 (5%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQ---KGPSQRLMQSSLVKGKLSKKPSLREA 485
             +    F +         R    +   +            M   L + ++ +    +E 
Sbjct: 74  ASQFDDSFPEIKANIPPSPRSGNVDKSRKRNLIDDLKKDVPMSQPLKEQEVREHQMKKER 133

Query: 486 --ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
               L + +     +     ++++     NE++ L   +     E+   L          
Sbjct: 134 FDRALESKLLGKRHITYANSDISNKELYINEIKSLKHEIKELRKEKNDTLNNYDTLEEET 193

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEAN-----IVDVRQGYQQALALYKRFRLLSRQKEEI 598
                 L+ L++++        + + +     I +  Q  ++   L ++ + +  Q  E+
Sbjct: 194 DDLKNRLQALEKELDAKNKIVNSRKVDDHSGCIEEREQMERKLAELERKLKTVKDQVLEL 253

Query: 599 E--KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           E    +  +  + + ++   L++ L+E+     + ++Q
Sbjct: 254 ENNSDVQSLKLRSKEDELKNLMNELNELKSNAEEKDTQ 291


>gi|320104025|ref|YP_004179616.1| metal dependent phosphohydrolase [Isosphaera pallida ATCC 43644]
 gi|319751307|gb|ADV63067.1| metal dependent phosphohydrolase [Isosphaera pallida ATCC 43644]
          Length = 536

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 47/147 (31%), Gaps = 15/147 (10%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           +QE  Q  A     + EL+   S +     E +          +  E       +QLDR+
Sbjct: 43  IQEDAQRRAAAILRDAELEA-RSLMIQRREEIETELDERRQALKEREADLDRRSEQLDRR 101

Query: 557 VRDAGLWSATTEAN-------IVDVRQGYQQALALYKRFRLLSRQKEEI------EKQIA 603
           +          EA        + ++    ++   L        R+  ++      +  + 
Sbjct: 102 LEKVRDLELEAEALRQRARGWVEELEDKERELEELRLARVAALRRVAQLTVEEARQLALE 161

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQ 630
           +V  + + E   + +     +  ++ Q
Sbjct: 162 EVQRELDEELLDLTMRHERRLRDELRQ 188


>gi|268316816|ref|YP_003290535.1| SMC domain-containing protein [Rhodothermus marinus DSM 4252]
 gi|262334350|gb|ACY48147.1| SMC domain protein [Rhodothermus marinus DSM 4252]
          Length = 1019

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 89/288 (30%), Gaps = 25/288 (8%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D F R       E L                            ++E  L+     ++++ 
Sbjct: 157 DEFTRKKPSERKEILARILNLDRYERLAELAREEVREAKARAEQIERQLEQIQEALQEES 216

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 +A+R+R   L  +  T         ++  R  + +   + L +    +    ++
Sbjct: 217 ALKTRHEALRERRHALEAERETRQRHLQTLQEQRVRLEENRRRLEELQEQERQQTARLQE 276

Query: 480 PSLREAAL-LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              RE  + L   +     L  + +E+         LQ+    L +   +          
Sbjct: 277 E--RERLVRLEAELQDLEQLLARREEIEQAHARERTLQEERRQLEAKREQ---------- 324

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
               ++   ++  +L+RQ  +     A        V++  Q+     +    ++++ +  
Sbjct: 325 YWGIQKQLDQVQSELERQRSELEKKLALVRKEQEHVQRQLQELTTRLQERPRIAQRLKAA 384

Query: 599 EKQIAQVTAKGEAEK------------TAILISILHEVHIQIHQIESQ 634
           E+   ++    +  +            +  L++   E+  Q+  ++ Q
Sbjct: 385 EQARQEMARLEQQRQQRSALEEEIRHVSETLLAAQKELEGQLRSLQRQ 432



 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 86/272 (31%), Gaps = 27/272 (9%)

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
           + E E +      + A +    ++    +++   R      I  RL+   Q         
Sbjct: 336 QSELERQRSELEKKLALVRKEQEHVQRQLQELTTRLQERPRIAQRLKAAEQARQEMARLE 395

Query: 447 GRYWKKNARHRDQKGPSQRL-MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
            +  +++A   + +  S+ L      ++G+L       E        + P  L       
Sbjct: 396 QQRQQRSALEEEIRHVSETLLAAQKELEGQLRSLQRQLEQE-----ADVPEQLAALEARC 450

Query: 506 ADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQ----- 556
            ++       + L   L    +  + K    E +  RL E  R   +L ++ D       
Sbjct: 451 RELEQQEARYRALQEELERLKETGQGKKAAIEALQARLQELERQQQDLQQRYDTFRQAEA 510

Query: 557 --------VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ-IAQVTA 607
                                    + +  +      +R   L +++E + +Q IA+++ 
Sbjct: 511 DVCPVCGSELGPEHREEVERHYEEQLEELARGLDEGRRRLAALEQEREALRQQYIARLSE 570

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               EK    ++       Q+ +++ + A  E
Sbjct: 571 AKRLEKAPEELARARA---QLEELQRRNARRE 599



 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 70/219 (31%), Gaps = 19/219 (8%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + +  R +++ Q +  E +      +  A+     G  ++L Q      +   +   + 
Sbjct: 291 LEQLLARREEIEQAHARERTLQEERRQLEAKREQYWGIQKQLDQVQSELERQRSELEKK- 349

Query: 485 AALLLTLINHPAILQEQYQEL-------ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              L  +      +Q Q QEL         I       ++    +     +++     E 
Sbjct: 350 ---LALVRKEQEHVQRQLQELTTRLQERPRIAQRLKAAEQARQEMARLEQQRQQRSALEE 406

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK---RFRLLSRQ 594
             R          K+L+ Q+R               +     +   L +   R+R L  +
Sbjct: 407 EIRHVSETLLAAQKELEGQLRSLQRQLEQEADVPEQLAALEARCRELEQQEARYRALQEE 466

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            E +++     T +G+      L + L E+  Q   ++ 
Sbjct: 467 LERLKE-----TGQGKKAAIEALQARLQELERQQQDLQQ 500


>gi|201067589|gb|ACH92815.1| mutant cardiac muscle beta-myosin heavy chain 7 [Homo sapiens]
          Length = 1935

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1566 NQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1626 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1685

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1745

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1746 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1806 KGGKKQLQKLEARVRELENELEAEQKRNA 1834


>gi|206890767|ref|YP_002249782.1| chromosome segregation SMC protein, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742705|gb|ACI21762.1| chromosome segregation SMC protein, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 1148

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 77/231 (33%), Gaps = 26/231 (11%)

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y   +   + Q  +     +  + +  ++  +        ++ ++  + +    K+   
Sbjct: 684 AYITQLNKEIFQTEE----RYKTFLKDIEQTKQRLKYMENEEKTIRDEINQNTKLKEEVY 739

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E   L   I      +E   ++ +++ +  E+    + +  + V  K      + ++L 
Sbjct: 740 VEIQNLSLCI------EELEAKIEELKNEQKEILN-KNDIHKEAVSNKKIELSTLKEKLN 792

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-----------ALALYKRFRLL 591
            +     +K+L+  ++   +     E  I   ++   Q              L      L
Sbjct: 793 SKKIE--IKRLNEHLKTISIKKLKNEEEIEQNKKRINQIEYEKAERIKNLENLNLEINSL 850

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
             Q+E + +++     K    +       L+E    I  +  ++  IEG G
Sbjct: 851 KEQRESLLEKLQ--NEKSVLTELEKSYQRLNEELQSITALLGEKKTIEGEG 899


>gi|157960524|ref|YP_001500558.1| poly(A) polymerase [Shewanella pealeana ATCC 700345]
 gi|157845524|gb|ABV86023.1| poly(A) polymerase [Shewanella pealeana ATCC 700345]
          Length = 434

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 92/308 (29%), Gaps = 32/308 (10%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS--FIRCYGKTAFEKLIVESL 379
           D D        +   L     + G R     +  G D      +R +   + EK+   + 
Sbjct: 49  DFDVVTNATPEEIKRLFRNCRLVGRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKTNE 108

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY--YSQAIRDRLQQLFQ 437
                      +N   +  ++    +  +      I D  +  Y    Q +  R  +L  
Sbjct: 109 SGR-----LLRDNVYGSIDEDAERRDFTVNALYYDISDFSIHSYGGGLQDLESRTIRLIG 163

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-----KLSKKPSLREAALL---- 488
              T +        +  R   + G S     +  ++G     K      + E  L     
Sbjct: 164 DPETRYREDPVRMLRAVRFATKLGMSIEPKAAEPIQGLAHLLKDIPAARMYEEVLKLFFA 223

Query: 489 ------LTLINHPAILQEQYQELADI--RYDNNELQKLWSFLF----SDFVEQKYFLPEE 536
                   ++    + +  + +L  +   Y N E  KL   +         + K   P  
Sbjct: 224 GKALENYHMMREFGLFEPLFPQLEALLKEYPNGETAKLLQEMMANTDERVAQDKPVTPAF 283

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            +  L      +    +  +   +        A + DV +   + +++ +RF  +++   
Sbjct: 284 FYAALLWYPLSQRADDIALESGLSS--YDAYNAAMGDVMEQQCRTISVPRRFSTITKDIW 341

Query: 597 EIEKQIAQ 604
           +++ +  +
Sbjct: 342 QLQLRFER 349


>gi|149038931|gb|EDL93151.1| centrosomal protein 1 (predicted) [Rattus norvegicus]
          Length = 1874

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 89/259 (34%), Gaps = 12/259 (4%)

Query: 386  WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
                 ++ +     +       L++  +H+K +     + +  R   ++  ++       
Sbjct: 1307 ISMGVQHCNIPEHRDLENEVSRLEDITHHLKSKHQEERWLKTSRQHPEKEVEELHRNIDD 1366

Query: 446  YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
              +  K+     ++   +    Q        + +  + E  +  +L +H  I+ E     
Sbjct: 1367 LVQEKKELELEVEELHRTVERHQQRRDFIDGNVENLMTELEIEKSLKHHEDIVDEIECLE 1426

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
              +    +EL++    L ++   +     E+    + +  F +  + L +   DA     
Sbjct: 1427 KTLLKRRSELRE-ADRLLAEAESELACTKEKTKSAVEK--FTDAKRNLLQTESDAEALEK 1483

Query: 566  TTEANIVDVRQGYQQALALYKRFRLLSRQK---EEIEKQIAQVTAKGEA------EKTAI 616
              +   +++ +  QQ   L      L + K   EEI K+I +V A  +A      EK   
Sbjct: 1484 RAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEK 1543

Query: 617  LISILHEVHIQIHQIESQE 635
            L   L  +   I   E  E
Sbjct: 1544 LTEELQSLQRDIKAAEVNE 1562



 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 56/151 (37%), Gaps = 13/151 (8%)

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           TL+     ++++  EL  +  D   ++K  + L +   EQ                  + 
Sbjct: 648 TLLQRLTEVKQEKDELEIVAMDAENMRKELAELENALQEQHEVNAS----------LQQA 697

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV-TAK 608
              L     +        +A    ++Q  +  +   +  + + +   E+EK+   +  A 
Sbjct: 698 QGDLSAYETELETQLKLKDAETSQLKQELENLVRRTQLEQSVLQ--TELEKERQSLRDAL 755

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           G+A+ +        E+  Q+ Q++   ++++
Sbjct: 756 GKAQSSEEKQQENSELRAQLKQLQDDNSLLK 786


>gi|125539277|gb|EAY85672.1| hypothetical protein OsI_07041 [Oryza sativa Indica Group]
          Length = 722

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/206 (9%), Positives = 63/206 (30%), Gaps = 6/206 (2%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           L           +   +    NA     K      ++S + +     +    E ++L   
Sbjct: 211 LSHADDAVRAGEANAAQVELLNAEINRLKNSFNSELESKVKESAEKTRKLEAETSVLRIK 270

Query: 492 INHPAILQEQYQELADIRYDNNELQK-LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           +    + +   +++A++      L+  + + + +           +   +L E       
Sbjct: 271 LKKAKVAE---EKVAELEGAVEGLRADVANAIKARREADGLVGEWKKKAQLLEIKLELAN 327

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           +    +           +A    ++    Q   L+ +   L  +     + I     + +
Sbjct: 328 QSSILKAESMSSVMKELDAANALLQVKESQIALLHDKIESLEHEVVRQNEDINASGQRVD 387

Query: 611 AEK--TAILISILHEVHIQIHQIESQ 634
           A +     L + + E+  ++  +E +
Sbjct: 388 AAQRGALALRTEIQELRSRLGAMEQE 413


>gi|123428136|ref|XP_001307407.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121889034|gb|EAX94477.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2114

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 86/250 (34%), Gaps = 10/250 (4%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            ++N      +   +L        N  KD   R    +   + L++  +  + E +     
Sbjct: 1850 SQNDIKKFNENINQLCESNNKLENANKDLNERQKILERDNNELKRQVENLMGEINKLNEE 1909

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
             +   R R         ++  L+K   +     R    + +L +H     E  + L    
Sbjct: 1910 KENLDRERKS-------LEGELIKQNQNDDEIKRLNDEIQSLNHHKK---ELEENLKLKE 1959

Query: 510  YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               ++L    S + +    Q   L E+I +   ++   EL+++L+    +          
Sbjct: 1960 NQLSDLSNTLSTISNALNSQISGLKEQIEELKQKQNPNELIEKLNELQEEKKKLEQDITD 2019

Query: 570  NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                  +  ++   L K  +    + +++  +   +    + E    ++ I  ++    +
Sbjct: 2020 KDKLNEELQKRVDELEKEKQNHYEEIQQLNLKTRDLELNNDDEDQIEVVQIKQKIDDHKN 2079

Query: 630  QIESQEAMIE 639
            +IE+   +I+
Sbjct: 2080 EIENLNKLID 2089


>gi|21592285|ref|NP_075745.1| keratin, type I cytoskeletal 20 [Mus musculus]
 gi|81904935|sp|Q9D312|K1C20_MOUSE RecName: Full=Keratin, type I cytoskeletal 20; AltName:
           Full=Cytokeratin-20; Short=CK-20; AltName:
           Full=Keratin-20; Short=K20
 gi|18921036|gb|AAL82480.1|AF473907_1 keratin 20 [Mus musculus]
 gi|12858336|dbj|BAB31280.1| unnamed protein product [Mus musculus]
 gi|123238432|emb|CAM21365.1| keratin 20 [Mus musculus]
 gi|148668883|gb|EDL01048.1| keratin 20 [Mus musculus]
          Length = 431

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 92/278 (33%), Gaps = 27/278 (9%)

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +S   ++   K+  E  + +T  + +     +K   N +KD +++    Q +       
Sbjct: 99  EQSNSRLEAQIKQWYETNAPSTIRDYSSYYAQIKELQNQVKDAQVQNA--QCVLRIDNAK 156

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
                           + A   D +G S+     +L K  L  +       L L    H 
Sbjct: 157 LAAEDFRLKFETERGMRIAVEADLQGLSKVYDNLTLQKTDLEIQIEELNKDLALLKKEHQ 216

Query: 496 AILQEQYQELADI--------------RYDNN---ELQKLWSFLFSDFVEQKYFLPEEIH 538
             ++   ++L +                  N      + L      +  EQ     + + 
Sbjct: 217 EEVEVLRRQLGNNVNVEVDAAPGLNLGEIMNEMRQRYEVLAQKNLQEAKEQFERQSQTLQ 276

Query: 539 QRL-----CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY-KRFRLLS 592
           Q++       +GF   + +L R  ++  +   +  +    + +  +   A Y  +   + 
Sbjct: 277 QQVTVNTEELKGFEVQVTELRRTYQNLEIELQSHLSMKESLERNLEDVKARYASQLAAIQ 336

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
                +E Q+ Q+ +  + E+     +IL ++  ++ Q
Sbjct: 337 EMLSSLEAQLMQIRS--DTERQNQEHNILLDIKTRLEQ 372


>gi|179508|gb|AAA51837.1| beta-myosin heavy chain [Homo sapiens]
 gi|179510|gb|AAA62830.1| beta-myosin heavy chain [Homo sapiens]
          Length = 1935

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1566 NQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1626 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1685

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1745

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1746 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1806 KGGKKQLQKLEARVRELENELEAEQKRNA 1834


>gi|12053672|emb|CAC20413.1| beta-myosin heavy chain [Homo sapiens]
          Length = 1935

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1566 NQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1626 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1685

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1745

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1746 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1806 KGGKKQLQKLEARVRELENELEAEQKRNA 1834


>gi|115496169|ref|NP_000248.2| myosin-7 [Homo sapiens]
 gi|83304912|sp|P12883|MYH7_HUMAN RecName: Full=Myosin-7; AltName: Full=Myosin heavy chain 7; AltName:
            Full=Myosin heavy chain slow isoform; Short=MyHC-slow;
            AltName: Full=Myosin heavy chain, cardiac muscle beta
            isoform; Short=MyHC-beta
 gi|85567024|gb|AAI12174.1| Myosin, heavy chain 7, cardiac muscle, beta [Homo sapiens]
 gi|85567608|gb|AAI12172.1| Myosin, heavy chain 7, cardiac muscle, beta [Homo sapiens]
 gi|119586556|gb|EAW66152.1| myosin, heavy polypeptide 7, cardiac muscle, beta, isoform CRA_b
            [Homo sapiens]
 gi|124302198|gb|ABN05283.1| myosin, heavy chain 7, cardiac muscle, beta [Homo sapiens]
          Length = 1935

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1566 NQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1626 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1685

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1745

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1746 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1806 KGGKKQLQKLEARVRELENELEAEQKRNA 1834


>gi|331028950|gb|AAK39135.2| Temporarily assigned gene name protein 278, confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1163

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 84/275 (30%), Gaps = 16/275 (5%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                    +E+     +       +R  E       +   ++    +  +   KD + R
Sbjct: 165 QTLEETVAEYERQKYNVMGTFSEYRERVAERERKLEAEYSGKIIALSEEVLGAKKDFEAR 224

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               QA++D+ ++  ++ + +     +   +    R        L Q  +++ +  ++  
Sbjct: 225 MKSFQALQDKFEREKEQALEKLRKEHQKEIQVLEQRFSDTQLLNLEQKYIIEIQRLEEER 284

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                         ++  E+ +            Q L+    +          E +    
Sbjct: 285 K-------------SLRTEKERLGETFEMKLRRAQSLYETELTAAKMLYTKELEALRDH- 330

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            E    ELL + D            ++ +  D+        AL K+     ++ + + K+
Sbjct: 331 EEALKEELLARQDEFHDRLQELQLQSKRSREDLVSCKNDVTALEKKLHNKEKEVQTLTKE 390

Query: 602 IAQVTAKGEAE--KTAILISILHEVHIQIHQIESQ 634
           + QV  +   +  +   + S   E   +  Q E +
Sbjct: 391 LDQVKTETNDKIRRLTEVTSEFAEYRKKFQQQEEE 425


>gi|326526685|dbj|BAK00731.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1121

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/330 (9%), Positives = 89/330 (26%), Gaps = 48/330 (14%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            DG+      + +  +L         ++  +           +    K   E     +   
Sbjct: 762  DGNISSTTDSKRVAELEAVCEEQAAKIKELSN---------LIEQQKEGSEDGEQTAEDK 812

Query: 382  VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
            +    +           +        LK+ +  + D         ++ D+++        
Sbjct: 813  IAEQCEDSRTPLDVYEREALEGEIQKLKDQVQLLTDGSTAN---DSLLDQIRNGSTDQEY 869

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            E     + W ++           R+   S  K     +  L E                 
Sbjct: 870  ELEKERQKWMESESKWISLTEELRMDLESSRKHAEKTEAELHE----------------- 912

Query: 502  YQELADIRYDNNELQKLWSF--LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
             ++      D+   + ++    +   +VE +    + + +     G    +K+   +   
Sbjct: 913  -EKKCTEELDDALQRAIYGHARIIEHYVELQELYDDLLERHRGVMGGIAEVKRAAARAGK 971

Query: 560  AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE--------------EIEKQIAQV 605
             G  +A   A   ++            + +  +R+                E+  ++ + 
Sbjct: 972  KGCGTAFAAALAAELSTVRIDREKERAQLKEQNRRLRVQLRDTAEAVHAAGELLVRLREA 1031

Query: 606  TAKG--EAEKTAILISILHEVHIQIHQIES 633
                  E E++A ++    ++  Q+ +   
Sbjct: 1032 EEASTQEKERSAAMLQENQKLKKQLEKTRK 1061


>gi|298252087|ref|ZP_06975890.1| chromosome segregation protein SMC [Ktedonobacter racemifer DSM
           44963]
 gi|297546679|gb|EFH80547.1| chromosome segregation protein SMC [Ktedonobacter racemifer DSM
           44963]
          Length = 1258

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 78/239 (32%), Gaps = 7/239 (2%)

Query: 403 ELEIHLKNCINHIKDQKLR-YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
             E  L+     + +QK +    + ++ +  +    + + +++   +  K +AR  +Q  
Sbjct: 705 AYERELRELPQQLDEQKEQLDGLNASLSEVQRAQEGRRVEQNALDKQLQKLSARANEQNK 764

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
               + +         +  +  E  L   +      +    + +        E+  L   
Sbjct: 765 IVTNIQRDQERSQTEIRLSASIEQQLAAEVAGLEQEVVAGQERVQAHEKKQREMSGLVEE 824

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L    +E++          L        L    ++ +      A       D++    Q 
Sbjct: 825 L-QYEMEERATSYRRQQDELGRA--RTALAVKRQEAKALRQQLAQQNTQAQDLKAQIGQQ 881

Query: 582 LALYKRFRLLSRQKEE-IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +A  K      +Q  E IE Q  Q+       K       LHEV  Q+ Q+E Q A IE
Sbjct: 882 VARAKELEQRQQQLRESIEGQRQQLEQARIQAKAQQT--QLHEVEGQLAQVEQQIASIE 938


>gi|229061451|ref|ZP_04198796.1| Chromosome partition protein smc [Bacillus cereus AH603]
 gi|228717874|gb|EEL69522.1| Chromosome partition protein smc [Bacillus cereus AH603]
          Length = 1189

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 53/141 (37%), Gaps = 4/141 (2%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           +E  +    ++  +  +  L   L     E +    +    +  ++       QL++ + 
Sbjct: 267 EELEELRGQLQAVDESVNSLQEVLLLSSKELEKLEGQRELLKERKQNATTHCAQLEKLIV 326

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
           +    + + +  I    +   Q +    + + L ++  + E+ +A   A+   E+   L 
Sbjct: 327 ELTEKTTSYDGEIETSTEALMQFVN---QVKELEKKLHDNEQLLATF-AENLEEQIENLK 382

Query: 619 SILHEVHIQIHQIESQEAMIE 639
               E+  Q   + ++ +MIE
Sbjct: 383 GDYIELLNQQASLRNELSMIE 403


>gi|291326802|ref|ZP_06125917.2| surface antigen repeat family protein [Providencia rettgeri DSM 1131]
 gi|291312655|gb|EFE53108.1| surface antigen repeat family protein [Providencia rettgeri DSM 1131]
          Length = 1176

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 63/158 (39%), Gaps = 11/158 (6%)

Query: 497  ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            +L+E+   +A +    +E + +   L +   E+K    +        +   + + +L+  
Sbjct: 887  LLKEKESAIAKLE---SEKKSISDALAAQESEKKKLDQQNQQFTKQTKAQEDKISKLESD 943

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
            +       +  E  + D  +      A  ++   L+++K  ++K   ++ +         
Sbjct: 944  IAAKTKKQSEIEQKLTDTNKLLGDLKANSQKELALAQEK--LKKLQTELDSSKSISSDEA 1001

Query: 617  LISILHEVHIQIHQIESQEAMIEGFGKM------SGRL 648
            L S +  ++ QI Q++++   ++  G        +GR+
Sbjct: 1002 LKSQIMALNRQITQLQNENDALKARGGSKSSTGLAGRI 1039


>gi|213968902|ref|ZP_03397042.1| chromosome segregation SMC protein [Pseudomonas syringae pv. tomato
           T1]
 gi|301385374|ref|ZP_07233792.1| chromosome segregation protein SMC [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063630|ref|ZP_07255171.1| chromosome segregation protein SMC [Pseudomonas syringae pv. tomato
           K40]
 gi|302133899|ref|ZP_07259889.1| chromosome segregation protein SMC [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926201|gb|EEB59756.1| chromosome segregation SMC protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 1162

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELER 203

Query: 601 QIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           Q+ ++  + + AEK     +   ++  Q+  +  Q A+ E  G
Sbjct: 204 QLERLHRQAQAAEKYQEYKAEERQLKAQLSALRWQ-ALNEQVG 245


>gi|145519213|ref|XP_001445473.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412928|emb|CAK78076.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1636

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 93/261 (35%), Gaps = 20/261 (7%)

Query: 379  LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438
                D  ++   E       +     E  ++   + ++DQ  +  Y+  I+      +  
Sbjct: 963  KEKSDKKFQAAQEEFYHKLRETEQNYEEEIETLKDDLRDQVQQ--YTNTIQQ-----YDH 1015

Query: 439  YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
             I         ++K+ +   ++  S +   ++ ++ +++   + R      +LI+   +L
Sbjct: 1016 EIALKQQTIEIFEKHIKEIKEQLISLQNNNNTTLEQQMNSFTTER-----KSLISKNDVL 1070

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
              Q   L        E   L      D +E +    E+  ++  +    E  + +DR   
Sbjct: 1071 SSQLNNL------QKEHMALQQK--KDLLENEKTRKEQQFEQSRKEWQEEKRELIDRLEE 1122

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
                     +  +    +  ++     ++   L ++ E+++KQI    ++ + +      
Sbjct: 1123 TKQRLQKMNDEFLEKKIEYGRETALTQQQNEFLQKKIEDLQKQIDTQQSRFDEKIKQQKN 1182

Query: 619  SILHEVHIQIHQIESQEAMIE 639
                E+  ++ + + ++  IE
Sbjct: 1183 EYSVELEQKLERAQEEKTAIE 1203


>gi|157110053|ref|XP_001650934.1| hypothetical protein AaeL_AAEL005473 [Aedes aegypti]
 gi|108878828|gb|EAT43053.1| conserved hypothetical protein [Aedes aegypti]
          Length = 408

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/286 (7%), Positives = 86/286 (30%), Gaps = 30/286 (10%)

Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408
            +   +   DP + +      +   +      +     + E    +      + +++   
Sbjct: 42  RYSKPTNLNDPHAALYRDNLASSGNIASRQSSIQAAYSEHEMRLLNDQRLGVKEQMDSLA 101

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              +   + Q       +   +R +++ Q+   E   +     +           +  ++
Sbjct: 102 ALVMQQRQTQAKMVEVLKDAEERYKKVVQELEEERRKHEHTTAQGDDITYGLEIERSRLK 161

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
             L   K  +K    E             LQ+  ++  + +       +    +     E
Sbjct: 162 QELEHEKEQRKVLELE-------------LQKIQEQFEEEK------NRQKQIVLLLLAE 202

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
           +K  + + I +R       ++L +      +        E    + ++  +    L  + 
Sbjct: 203 RKKIIIKYIEERKRSEDLAQILSE------EKLRVDTIAEGLEEESKKSLRMEAELETQT 256

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +    +++ + + + +   + + ++       + ++  ++  +  Q
Sbjct: 257 QQFDLERKMLHQSLGKEEKRIKEQEI-----EIQQLKAELELLRKQ 297


>gi|40556094|ref|NP_955179.1| CNPV156 hypothetical protein [Canarypox virus]
 gi|40233919|gb|AAR83502.1| CNPV156 hypothetical protein [Canarypox virus]
          Length = 832

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/282 (10%), Positives = 97/282 (34%), Gaps = 15/282 (5%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
           A +++   ++ ++++  ++ TE       +   +  + +   +  I +  ++    +AIR
Sbjct: 323 AMKRITERAIKILNIEIRQITERAMQEITENTMQEIVEM--IMQEITENSIQEVIERAIR 380

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           + ++   QK +            N         +   + + + +  + +  ++    +  
Sbjct: 381 EIIENTMQKIVEIEMQKTTKRAMNKIIERVMNKTVERLMNRITEIAIKRIMNIEIHEITE 440

Query: 490 TLINH------PAILQEQYQELADIRYDNNELQKLW----SFLFSDFVEQKYFLPEEIHQ 539
             I          I +   + L +   +   +QK+       +  + + +      E+ +
Sbjct: 441 IAIQEITENTMQEITERSMERLMNKTLEI-AMQKIVEIEVQEIIENAIRESEMQESEMKE 499

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                      +++        +     E  I ++ +   Q +A+ +      ++    E
Sbjct: 500 NAERAMQEIAEREMKEIAMQEIVEREMQEIAIQEIAERAMQEIAIQEIAERAMQESVMQE 559

Query: 600 KQIAQVTAKGEAEKTAILISI--LHEVHIQIHQIESQEAMIE 639
            ++ ++T +   E T   +    + E   +  Q  ++ AM E
Sbjct: 560 IEMQEITERTIQEITERAMQEIAIQESAKRAMQESAERAMQE 601



 Score = 37.2 bits (84), Expect = 8.0,   Method: Composition-based stats.
 Identities = 36/363 (9%), Positives = 117/363 (32%), Gaps = 34/363 (9%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
            +   +  +  R +      +       + +++++  +   +    +  +  E  ++ ++
Sbjct: 329 ERAIKILNIEIRQITERAMQEITENTMQEIVEMIMQEITENSIQEVIERAIREIIENTMQ 388

Query: 365 CYGKTAFEKLIVESLP-LVDMLWKRETENRSFNTPDERAELEIHL-KNCINHIKDQKLRY 422
              +   +K    ++  +++ +  +  E       +   +  +++  + I  I  Q++  
Sbjct: 389 KIVEIEMQKTTKRAMNKIIERVMNKTVERLMNRITEIAIKRIMNIEIHEITEIAIQEITE 448

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              Q I +R  +       E +       +     +       + +S + +        +
Sbjct: 449 NTMQEITERSMERLMNKTLEIAMQKIVEIEVQEIIENAIRESEMQESEMKENAERAMQEI 508

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +    +    I++ + QE+A        +Q++     ++   Q+  + E   Q + 
Sbjct: 509 AEREMKEIAMQ--EIVEREMQEIAIQEIAERAMQEIAIQEIAERAMQESVMQEIEMQEIT 566

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDV------RQGYQQALALYKRFRLLSRQKE 596
           ER   E+ ++  +++          + +          ++   Q +A       + ++ E
Sbjct: 567 ERTIQEITERAMQEIAIQESAKRAMQESAERAMQESVMQEIEMQEIAERAMQESVMQEIE 626

Query: 597 EIEKQIAQ------------------------VTAKGEAEKTAILISILHEVHIQIHQIE 632
             E+ + +                          A  E E     +       I+I +I+
Sbjct: 627 MQERAMQERAMQERAMQERAMQEIEMQERAMQERAMQEIEMQEREMQERAMQEIEIREIK 686

Query: 633 SQE 635
            QE
Sbjct: 687 IQE 689


>gi|47217964|emb|CAG02247.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2046

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 82/241 (34%), Gaps = 24/241 (9%)

Query: 415  IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
            +K Q     Y++   + ++   +    E        +      +++  S +  +  + + 
Sbjct: 920  MKLQAETDLYAE--AEEMRVRLEAKKQELEEVLHEMETRLEEEEERSLSLQQEKKDMEQQ 977

Query: 475  KLSKKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
                +  + E       +    +  E    +   D+ +  ++  KL   +F    E+K  
Sbjct: 978  LQLMEAHIVEEEDARQKLQLEKVAVEGKVKKLEEDVLFMEDQNNKLQKGVFLHLQERKIL 1037

Query: 533  LP--EEIHQRLCERG-----FGELLKQLDRQVRDAGLWSATTEANIVDV----RQGYQQA 581
                 ++   L E         +L  + +  + D  +     E    D+    R+   + 
Sbjct: 1038 EERMADLSSNLAEEEEKSKNLTKLKSKHESMISDLEVRMKKEEKGRQDMEKAKRKVEAEL 1097

Query: 582  LALYKRFRLLSRQKEEIEKQIA---------QVTAKGEAEKTAILISILHEVHIQIHQIE 632
              L+++   L  Q EE+  Q+A         Q + + E+ +    +  + E+   I +++
Sbjct: 1098 ADLHEQHADLQAQLEELRAQLAAKEEELQATQASLEEESSQRGAAVKRVRELEALISELQ 1157

Query: 633  S 633
             
Sbjct: 1158 E 1158


>gi|54298609|ref|YP_124978.1| hypothetical protein lpp2673 [Legionella pneumophila str. Paris]
 gi|53752394|emb|CAH13826.1| hypothetical protein lpp2673 [Legionella pneumophila str. Paris]
          Length = 1164

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 50/394 (12%), Positives = 122/394 (30%), Gaps = 20/394 (5%)

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
            G++ Y   GA    +      +   + +    + G   V  L +A  + + + L  A  
Sbjct: 110 DGESFYYLNGARCRRKDITDIFLGTGAGARSYSIIGQGTVSRLIEAKPEELRAYLEEAAG 169

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
             + +   + + + +     +   +    +  +L         +            +  I
Sbjct: 170 VSKYKERRRETLQRIEQTRDNLTRVADIRE--ELGKHLQRLERQAKAAERYTILKEEEKI 227

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
                 A +         V     +E   R+                    ++D   +  
Sbjct: 228 CRAEIQALKWQEYSEKQTVKQRELQELAIRNEQQQSLLTSCYKERAVLNEQLQDAIDQSQ 287

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             Q    +      +         R  K+    R Q     +L++  L            
Sbjct: 288 SIQDSLYQSGTEIARLEEAIQQQEREKKRLENDRQQMQVDSQLIEEQLKLDNEELHNCKL 347

Query: 484 EAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSF--LFSDFVEQKYFLPEEIHQR 540
           +A  L   ++H  +  +EQ     + + + ++ +K+W    + S+ ++ +Y L +   Q 
Sbjct: 348 KAQQLEEHLHHLKMEFKEQESLWQEKQKEQSQWEKIWQEVQINSNTIKNEYQLTQAKLQH 407

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L ++    L+           L     E + + +    +  + L ++   L   +E  E+
Sbjct: 408 LEQKRHQVLV----------RLEKLNLEQSAISLDDLQKNKIKLQEKHFQLKETQEFDEE 457

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           Q+ Q       E  + L + L     Q+H ++ +
Sbjct: 458 QLRQAN-----ETQSDLQNQLQNTEQQLHALQDE 486


>gi|37522891|ref|NP_926268.1| chromosome segregation SMC protein [Gloeobacter violaceus PCC 7421]
 gi|35213893|dbj|BAC91263.1| glr3322 [Gloeobacter violaceus PCC 7421]
          Length = 1165

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 73/253 (28%), Gaps = 24/253 (9%)

Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
                  L   +  + ++  R    Q   +             +   R  +    H  Q+
Sbjct: 676 MRARLGDLDRLLATLAERLERRE--QRAHELQSAAEAAQRELVAIENRAEQLGREHSTQQ 733

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ---- 516
             + +L           +     +A L   L      + +  +ELA +   +N  +    
Sbjct: 734 ARATQLRVFLDSCQVGLEADRQEQADLAARLGPLREQIVQVREELAKLEQSDNHHRWQQS 793

Query: 517 ---------KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
                    ++  +       +       + ++L +     LL +          +    
Sbjct: 794 QQHLRELETEVRRWELQLRHAEADLQKSHLDEQLAQEKRQNLLSRRLDWEDQKVEFGQRE 853

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           E +   + +  +    L  +   L  +  +I+++  ++ A G           L +   Q
Sbjct: 854 EESRTRLAEFDRVIAELAAQVAELEERLVDIKRERDRLEAHG---------RALQQRQGQ 904

Query: 628 IHQIESQEAMIEG 640
           ++    QE + +G
Sbjct: 905 LNLQREQERLHQG 917



 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 82/229 (35%), Gaps = 17/229 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              +R RL  L +   T      R  ++    +     +QR + +   + +   +    +
Sbjct: 673 LAEMRARLGDLDRLLATLAERLERREQRAHELQSAAEAAQRELVAIENRAEQLGREHSTQ 732

Query: 485 AAL---LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            A    L   ++   +  E  ++          L  L   +     E       +     
Sbjct: 733 QARATQLRVFLDSCQVGLEADRQ-EQADLA-ARLGPLREQIVQVREELAKLEQSD--NHH 788

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             +   + L++L+ +VR   L     EA++   +    + LA  KR  LLSR+ +  +++
Sbjct: 789 RWQQSQQHLRELETEVRRWELQLRHAEADLQ--KSHLDEQLAQEKRQNLLSRRLDWEDQK 846

Query: 602 I----AQVTAKGEAEKTAILISIL----HEVHIQIHQIESQEAMIEGFG 642
           +     +  ++    +   +I+ L     E+  ++  I+ +   +E  G
Sbjct: 847 VEFGQREEESRTRLAEFDRVIAELAAQVAELEERLVDIKRERDRLEAHG 895


>gi|81914475|sp|Q8CIM1|LRC45_MOUSE RecName: Full=Leucine-rich repeat-containing protein 45
 gi|23271084|gb|AAH23296.1| Leucine rich repeat containing 45 [Mus musculus]
          Length = 670

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 88/270 (32%), Gaps = 17/270 (6%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ---AIRDRLQQLFQKY 439
           D   +  ++        ER E        +  +     +    +      +R  +  Q+ 
Sbjct: 330 DQERQSLSQRHEKERKLERQEAADRESKLLRDLSAANEKNLLLRSQVDELERKARSQQEQ 389

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA---LLLTLINHPA 496
           +              + R  +   +  ++    K  +     L       +   L     
Sbjct: 390 LFLTKQELTNTSAELKIRAIQAEERLDVEKRRAKQNMEDLEKLHSKEVDHMTRHLEESER 449

Query: 497 ILQEQYQELADIRYD-NNELQKLWSFLF-SDFVEQKYFLPEEIHQRLCERG-FGELLKQL 553
            +QE+ Q L  +R     EL ++ + +       ++  +      RL E+     L +++
Sbjct: 450 AMQERVQRLEALRLSLEEELSRMKAAVLSERGQAEEELIKARNQARLEEQHRLAHLEEKI 509

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
               +       T       V +   +   L  +     R+ EE+++++       + EK
Sbjct: 510 RLLAQARDEAQGTCVQQKQMVAESQARVSQLNLQMEGQQRRLEELQQELINK----DQEK 565

Query: 614 TAILISILHEVHIQIHQIE----SQEAMIE 639
            A +  +  E+  Q+ +++    +QEA+ E
Sbjct: 566 VAEVARVRVELQEQMGRMQADLVAQEALRE 595


>gi|325089624|gb|EGC42934.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
          Length = 862

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/271 (9%), Positives = 74/271 (27%), Gaps = 28/271 (10%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKLRYYYSQAIRDR 431
           +L  +  P    +   + E          +    +           +     Y +A+   
Sbjct: 162 RLDADEKPNGSHIEDDQRETSPSGDGHVISRAVENSVPKIGVTEPTETSTDDYEEAMAQM 221

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
                   +        Y ++    + +     +    S      S +    E  LL   
Sbjct: 222 RADHEMSELRWQEELHAYVERIDALQSKLKYLAKEAAESAKNAAASAEAGSLEKKLLE-- 279

Query: 492 INHPAILQEQYQ--ELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                I     +  +L+    D+   ++KL   +      Q                  +
Sbjct: 280 -KDEQIANLMEEGQKLSKTELDHRATIKKLRQSIAESAKSQ--------------AETKK 324

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-------KEEIEKQ 601
            L+++++ + +A    +  E       +         K+    + +         +++ Q
Sbjct: 325 RLEKVEKDLVNAEDRVSQAEIAEQKALERLNSVSKAEKQLETATAEREASNATITDLKSQ 384

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +A+  ++ EA +    +        QI ++ 
Sbjct: 385 LARAVSRAEAAERKARMEATEAEKRQIAELR 415


>gi|308190353|ref|YP_003923284.1| hypothetical protein MFE_08390 [Mycoplasma fermentans JER]
 gi|319777749|ref|YP_004137400.1| ATP-dependent clp protease, atpase subunit [Mycoplasma fermentans
           M64]
 gi|307625095|gb|ADN69400.1| hypothetical protein MFE_08390 [Mycoplasma fermentans JER]
 gi|318038824|gb|ADV35023.1| ATP-dependent Clp protease, ATPase subunit [Mycoplasma fermentans
           M64]
          Length = 717

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 73/220 (33%), Gaps = 23/220 (10%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +    +    R+  L        +       +   + + K     L+ ++ +  +   
Sbjct: 186 IEKDAALERRMQRVDVLEPSIEDTITILRGIKDRFENYHNVKIQDDALVAAARLSSRYIS 245

Query: 479 KPSLREAALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
              L + A+         ++ E    +  +I +   EL+K    +    +E+     E+ 
Sbjct: 246 DRFLPDKAI--------DLVDEAAATIKTEINFQPEELEKAKQKMARLKMEKIAISSED- 296

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                ++     LK++D +++D        E  I  +   +       +    L  + ++
Sbjct: 297 -----KKKHAVRLKEIDAEIKDI-------EKTIKQLEDKWNFEKQRLEELSNLKSKLDD 344

Query: 598 IEKQIAQVTAKGEAEKTAI-LISILHEVHIQIHQIESQEA 636
              ++     + + EK +  L   +  +  QI + E + A
Sbjct: 345 ARHRLNIYQKETDYEKASKILYDEIPSIKKQIEETEKEIA 384


>gi|293572395|ref|ZP_06683375.1| conserved hypothetical protein [Enterococcus faecium E980]
 gi|291607457|gb|EFF36799.1| conserved hypothetical protein [Enterococcus faecium E980]
          Length = 522

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 40/124 (32%), Gaps = 16/124 (12%)

Query: 519 WSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
            S L  +    +  + E +     +R  +    ++L +L  +            A   D 
Sbjct: 54  ASQLIDELENGEERISEPVDPKEKERQDQENLEKILDELATEANKTSARLDEVNAQFADN 113

Query: 575 RQGYQQALALYKRFR----------LLSRQKEEIEKQIAQVTAKGEA--EKTAILISILH 622
           +    +      +                Q++ +E +I ++ A G+   E+   L + L 
Sbjct: 114 KAARNEKQEALMQLNTKEELGELTEEELAQRQTLEAEIKELEATGDTLLEEQLKLEAELK 173

Query: 623 EVHI 626
           ++  
Sbjct: 174 DIRK 177


>gi|261330612|emb|CBH13596.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 941

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 73/216 (33%), Gaps = 20/216 (9%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            + LQ    +  TE   +    +   R   Q+  + + +  + ++   ++   L++  L 
Sbjct: 494 AEGLQTTATRLATEMEAFRAECRARERAAAQERQNSQELLRAQLRECTAEVEDLKQRLLQ 553

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             L        E+ +   +I      LQ L +       E K+   +       ER   E
Sbjct: 554 RDL--------EEQRLRDEIALKAQALQNLRTENKRLLEEAKHADDK------REREVTE 599

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----RFRLLSRQKEEIEKQIAQ 604
               L++      L     EA    ++   ++  A YK    R     +  +E  +++ +
Sbjct: 600 CQISLEKNTAALYLQKTQAEAECQRLQHALEEIEARYKACERRLDDERQALKETAEKLQE 659

Query: 605 VTAKGEAEKT--AILISILHEVHIQIHQIESQEAMI 638
                E  K       +   E+  ++ +  S+ A +
Sbjct: 660 SRDAAEESKVAHRRTQTRRQELEEELQRKNSELAAV 695


>gi|257898003|ref|ZP_05677656.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|257835915|gb|EEV60989.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 522

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           ++++  ++     + ++  +L   L +   +    +  +  +R  +    ++L +L  + 
Sbjct: 37  IKKEADKVTASHKEKDQASQLIDELENGEEKISEPVDPKEKERQDQENLEKILDELATEA 96

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFR----------LLSRQKEEIEKQIAQVTA 607
                      A   D +    +      +                Q++ +E +I ++ A
Sbjct: 97  NKTSARLDEVNAQFADNKAARNEKQEALMQLNTKEELGELTEEELAQRQTLEAEIKELEA 156

Query: 608 KGEA--EKTAILISILHEVHI 626
            G+   E+   L + L ++  
Sbjct: 157 TGDTLLEEQLKLEAELKDIRK 177


>gi|222099107|ref|YP_002533675.1| hypothetical protein CTN_0133 [Thermotoga neapolitana DSM 4359]
 gi|221571497|gb|ACM22309.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359]
          Length = 758

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 550 LKQLDRQVRD--AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           L++L   +R+       A  +  +  V +  +Q L L ++   L R+K++++  + ++  
Sbjct: 501 LEELTEYMREQEEEFRKALEKVGLESVEELLKQ-LELKEQLLRLEREKKDLQNTMKKLLE 559

Query: 608 KGEAEKTAILISILHEVHIQI----HQIESQEA--MIEGFGKM 644
           + E  ++      + E+  ++     ++E+ E   + E +G M
Sbjct: 560 EKENVESMKSSQRIKELEERVNSIGRELEALEIPPLEEPYGLM 602


>gi|183235158|ref|XP_649228.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|169800709|gb|EAL43842.2| hypothetical protein EHI_072490 [Entamoeba histolytica HM-1:IMSS]
          Length = 1105

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/272 (8%), Positives = 80/272 (29%), Gaps = 18/272 (6%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                     ++            +       +E+   +   +     + D+ L+   S+
Sbjct: 286 NPETVYDNANDAYSNGGAGKYVSRQYDKQPIDNEQQFYQFGGRPYNPPLPDESLQNIVSR 345

Query: 427 AIRDRLQQ----------LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            +  RL +          L +K + ++    R   +  +   +       ++S++ K K 
Sbjct: 346 ELDKRLGEEGSFYKENNKLQKKIVDDNKSLYRAILRAQQDNLKNVHHIERLESAIKKYKQ 405

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLP 534
           + +  +    L+     +  ++ E   ++ +++    +   + + + +     EQ   L 
Sbjct: 406 NAERFITVEDLVR---ENRELINENVNKINELKLQFGDFIPRNVRTQIKD-LTEQNSVLK 461

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             + Q     G      +L+              + + ++ +       L  ++     +
Sbjct: 462 RRVSQIERNNGIFVTRAELNAFRDFYEPLIEKQGSRLQNIEERVNVMRGLIDKYPAFENE 521

Query: 595 KEEIEKQIAQVTAKGEA--EKTAILISILHEV 624
            + +      +        +        L+ +
Sbjct: 522 LQNLSNAYRNMGMVFSKQYDDLNSQFRHLNTI 553


>gi|115725167|ref|XP_781237.2| PREDICTED: similar to CG32580-PA [Strongylocentrotus purpuratus]
 gi|115970741|ref|XP_001186295.1| PREDICTED: similar to CG32580-PA [Strongylocentrotus purpuratus]
          Length = 7282

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 55/186 (29%), Gaps = 11/186 (5%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                  Y + +  +   L +K   E        +  A  +  +   +  +          
Sbjct: 6197 PVQTRQYDETVEAKPYMLHEKQQVEIKQKNFGNQHKAPEKISEPTKKEEVSPVRQSLVPV 6256

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL-PEE 536
            ++P   E     T I H  +  E   EL +          +   L  +  E+      E 
Sbjct: 6257 REPPSEEFI---TTIKH-EVRDEVIDELTE-ELTT----SIRDQLSLELKEEFKEEMRET 6307

Query: 537  IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            + +   E  F +  ++L  +     +     E    D+    ++ L    R  +     +
Sbjct: 6308 VMEEFREEIFDDYREELIVEFAP-RIKHEIEEEVREDLEVTIRRELEPRIREEIKEEYIQ 6366

Query: 597  EIEKQI 602
            E  K++
Sbjct: 6367 ERVKEL 6372


>gi|114647917|ref|XP_001140414.1| PREDICTED: golgin subfamily A member 3 isoform 1 [Pan troglodytes]
          Length = 1499

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 46/120 (38%), Gaps = 8/120 (6%)

Query: 528 EQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           E      E    ++ E       +L ++L+    +        ++     +Q  Q  L L
Sbjct: 647 EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTL 706

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI-----LISILHEVHIQIHQIESQEAMIE 639
            +R + L   ++E    + Q+T   EA ++       L +   E+  ++ +++ + A  E
Sbjct: 707 LQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASRE 766


>gi|114566045|ref|YP_753199.1| ATPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114336980|gb|ABI67828.1| putative ATPase with chaperone activity, two ATP-binding domains
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 864

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 47/146 (32%), Gaps = 10/146 (6%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           I   A L+ ++Q +        +   +   L   +             R+ +        
Sbjct: 324 IEKDAALERRFQPIMVNPPSVEDTISILRGLKERYEVHHGV-------RIQDSALVAAAV 376

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE---KQIAQVTAK 608
             DR + D  L     +       +   +  ++      ++R+  ++E     + +   +
Sbjct: 377 LSDRYISDRFLPDKAIDLMDEAAARLRTEIDSMPAELDEITRRIMQLEIEAAALGKEKDE 436

Query: 609 GEAEKTAILISILHEVHIQIHQIESQ 634
              E+   L+  L ++  +   +++Q
Sbjct: 437 ASRERLEDLLKELQDLKSEAEVMQAQ 462


>gi|73994499|ref|XP_859560.1| PREDICTED: similar to restin isoform b isoform 10 [Canis
           familiaris]
          Length = 1392

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 43/393 (10%), Positives = 115/393 (29%), Gaps = 32/393 (8%)

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
            AL    + + K+     S      +   DV++L ++ ++  ++S   A+ E ++     
Sbjct: 543 KALQAATEKLSKENESLKSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKG 602

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR-----GEDPDSFIRCYG 367
           +        +      +        +       +              G+          
Sbjct: 603 VGMETTEFVELKTQIEKMRLDYQHEIENLQNKQDSERSAHTKEIEALRGK---LMAVVKE 659

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
           K +  + I   L   +     E E+      +   +++          +  K+   ++  
Sbjct: 660 KESSLEAIKAKLDKAEDQHLVEMEDTLSKLQEAETKVKELEVLQAKCNEQTKVIDNFTSQ 719

Query: 428 IR---DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR- 483
           ++   ++L  L         G     K   +    +   + L      +   +   +   
Sbjct: 720 LKATEEKLLDLDALRKASSEGKSEIKKLRQQLEAAEKQIKNLEIEKNTESGKASSITREL 779

Query: 484 --EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             +  +L  L  + + + +  + L        ELQ L         E             
Sbjct: 780 QGKDLILNNLQKNLSEVSQVKEALE------KELQILKEKFADASEEAVSV--------- 824

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +R   E + +L ++       S   E    ++     +     +R   L + KE++E  
Sbjct: 825 -QRSMQETVNKLHQKEEQFNALSTELEKLRENLTDMEAKFRERDEREEHLIKAKEKLEND 883

Query: 602 IAQV--TAKGEAEKTAILISILHEVHIQIHQIE 632
           IA++   +   + +   +   L      + +++
Sbjct: 884 IAEIMKMSGDNSSQLTKMNDELRLKERNVEELQ 916


>gi|47206643|emb|CAF91366.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1033

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           P  I Q   ++    +   L                  ++ R+   ++L + +    L +
Sbjct: 488 PASILQEREDQNQQAIAAYLKN--ARKDHQRILARRQTIEERKERLESLNIQREKEELEQ 545

Query: 594 QKEEIEKQIAQVTAKG-EAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           ++ E++K I ++      A++   L     E+     ++++QE  I+ F
Sbjct: 546 REAEMQKNIEELDPDFIMAKQVEQLEKEKKELQ---ERLKNQEKKIDYF 591


>gi|88810626|ref|ZP_01125883.1| hypothetical protein NB231_16138 [Nitrococcus mobilis Nb-231]
 gi|88792256|gb|EAR23366.1| hypothetical protein NB231_16138 [Nitrococcus mobilis Nb-231]
          Length = 1170

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 73/236 (30%), Gaps = 21/236 (8%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + +  R + L        S   R  +   R          +  +     ++ +   
Sbjct: 700 EALREELARRQRDLASDRTRAESLLHRRDQIRQRRSVIAQEQTEIAATRQDTVEVIRTAQ 759

Query: 482 LREAALLL---TLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            R    L    TL    A+  E+ Q L A +    N   +L + L    ++++     + 
Sbjct: 760 ARLQEALERGETLERERALHNEEQQRLQAQLATAQNRCNELQARLHELTLQEQSVATAQ- 818

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L E       ++     RDA L +   + +  +  +   +   L  R R +  +  +
Sbjct: 819 -AALEESFTRLQTRRERLLTRDAELEAVLAQLDAPEA-ELESERERLLARQRTVEEELRQ 876

Query: 598 IEKQIAQVTA---KGEAEKTAILIS-----------ILHEVHIQIHQIESQEAMIE 639
             +++ +      + E +++                 L E  ++I      E + E
Sbjct: 877 ARRELDESGRRLRELEPQRSQAAQRAVELRHVLESVRLREQELKIRAQAQVEQLDE 932


>gi|306922652|gb|ADN07524.1| synaptic nuclear envelope 2 [Microtus ochrogaster]
          Length = 887

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 66/216 (30%), Gaps = 15/216 (6%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           ++L  L  +       +     +    + +   + + + S L  G ++      EA L  
Sbjct: 508 EQLDTLTGQQPGAFDRWELIQAQELHGKLRIKENAQRLNSDL--GAIAAWLEKTEAELEA 565

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFG 547
             +  P        ++ ++     +LQ++     +              + L        
Sbjct: 566 LRLAEP------PSDVQEMSLRVKKLQEILKAFATYKALMASVNVSH-KESLPSESPEST 618

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT- 606
           EL  +L +            ++   D+RQ   Q    ++  + L       E +  +   
Sbjct: 619 ELQNRLHQLSLSWDTVQGVMDSWREDLRQSLMQCQDFHRLSQDLLLWLASAESRRQKARV 678

Query: 607 ---AKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               + + E        L ++  ++   + Q + ++
Sbjct: 679 VASPEADREVLLECQKELMQLEKELEDRQPQASSLQ 714


>gi|300676916|gb|ADK26788.1| spectrin repeat containing, nuclear envelope 1, 3 prime
           [Zonotrichia albicollis]
          Length = 7508

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 84/248 (33%), Gaps = 16/248 (6%)

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
              ++D     +  + + +RL  L        +      K  A  +  +   +   +   
Sbjct: 302 YAALQDCTDLCHTVEKLSNRLASLSAGVRKVANKEKAAQKVAALQQKYEKVLESAKEKQS 361

Query: 472 VKGKLSKKPSLREAAL---LLTLINHPAILQEQYQELADIRYDNN----ELQKLWSFLFS 524
           +   L  +   +E  L   L  L    A  +   Q ++  R         LQ L + + S
Sbjct: 362 LLENLLAQWQKQEKELSAFLAWLEGCEAAGRPAEQYVSADRIKLEGELQALQDLRADIVS 421

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                +  L  ++++ L      + +K +  +  +           +       Q  +A 
Sbjct: 422 HTSVYESLL--QLNESLFPTASKQCVKAIKEKFEELDESWKALPQIVDKRINFLQSLVAE 479

Query: 585 YKRFRLLSRQKEE-IEKQIAQVTAKGEAEKTAILI------SILHEVHIQIHQIESQEAM 637
           + +F  L  +  + I++ +A++ A  E       +      + L EV  +  +++S +  
Sbjct: 480 HGQFDELLLRFSDWIKQFLAELQATSEINTADQQLAASNNKNHLMEVESKKQELQSLKEH 539

Query: 638 IEGFGKMS 645
           +E  G  S
Sbjct: 540 VEKLGSFS 547


>gi|297296468|ref|XP_002804829.1| PREDICTED: myosin-Vc-like [Macaca mulatta]
          Length = 1734

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 90/267 (33%), Gaps = 25/267 (9%)

Query: 382  VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
             +   +   E        +  +    LK  I  +KD+K +    Q + +  + +    + 
Sbjct: 995  REWEERMLLEKSFELKTQDYEKQIQSLKEVIKALKDEKTQ---LQQLVEE-EHVTSDGLK 1050

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA--ALLLTLINHPAILQ 499
                      K     +++    +  +  + K   S+K  +RE    +   L+    I  
Sbjct: 1051 AEVARLSKQAKTISEFEKEIQLLQAQKIDVEKHVQSQKREMREKMSEITKQLLESYDIED 1110

Query: 500  ----------EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-RLCERGFGE 548
                      E   E  ++ +    L+K    L S F  QK    +EI           +
Sbjct: 1111 VRSRLSMEDLEHLNEDGELWFAYEGLKKATRVLESHFQSQKECYEKEIEALNFKVVHLSQ 1170

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             +  L +  R+    + +    +  +           ++   L +QK+++E ++      
Sbjct: 1171 EINHLQKLFREENDINESIRLEVTRLTSENMMIPDFKQQISELEKQKQDLEIRLN----- 1225

Query: 609  GEAEKTAILISILHEVHIQIHQIESQE 635
               E+T  +   L E+  Q+++ + +E
Sbjct: 1226 ---EQTEKMKGKLEELSNQLNRSQEEE 1249


>gi|293344918|ref|XP_002725883.1| PREDICTED: pericentrin-like [Rattus norvegicus]
 gi|293356749|ref|XP_002728982.1| PREDICTED: pericentrin [Rattus norvegicus]
          Length = 2862

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +     L ++L  ++          +     +    ++   L +    + RQ  ++++++
Sbjct: 1305 DEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEEL 1364

Query: 603  AQVTAKGEA-----------EKTAILISILHEVHIQIHQIESQE 635
             +     E            E+   +I  L E   Q+ + +++E
Sbjct: 1365 EKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEE 1408


>gi|281350530|gb|EFB26114.1| hypothetical protein PANDA_000094 [Ailuropoda melanoleuca]
          Length = 2060

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1785 LQAQLEEANKQKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFER 1841

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1842 TQVKRLESLAGRLKENMEKLTEERDQRTAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1901


>gi|262164232|ref|ZP_06031970.1| exonuclease SbcC [Vibrio mimicus VM223]
 gi|262026612|gb|EEY45279.1| exonuclease SbcC [Vibrio mimicus VM223]
          Length = 1013

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 79/284 (27%), Gaps = 33/284 (11%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           +    ++  KR    +      +    +         I+ ++  +     +     Q  Q
Sbjct: 404 AQLEQEIQTKRLEWEQQQRKLTDLEARKAQFSQLTLQIQSREREHALFTEL-----QSVQ 458

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
           + +       R  + ++    Q      L   +    +L+++    E   +   + HP  
Sbjct: 459 QELQRFELLYRQAQTHSEQAKQSADKLELAWHTQRAAELAQELRQNEPCPVCGSLEHPNK 518

Query: 498 LQEQYQELADIRYDNNELQKLWSF-------LFSDFVEQK------YFLPEEIHQRLCER 544
            Q     +   +    + + L           F+ + +Q             +   L E+
Sbjct: 519 AQFSGDAVT--KLQVEQARNLQQQSVERQQTAFNHYQQQGFKVQQVEQSLANLTAELNEQ 576

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIA 603
               L   L +Q        A  + N   +++  +       + +  L +Q    ++   
Sbjct: 577 KIAPLTNLLQQQQTLRSEIHALQQLNPELLQRQIEDCEQRLVQSKAALEKQLLNKQQAWQ 636

Query: 604 -----QVTAKGEAEKTAILI-------SILHEVHIQIHQIESQE 635
                Q       +             + +  + IQI  ++  E
Sbjct: 637 VLTQAQAELTSLQQDIPEEFSDLNVLRAEIQRIQIQIEALQKSE 680


>gi|242266592|gb|ACS91152.1| SLA2 [Microsporum gypseum]
          Length = 1068

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 42/386 (10%), Positives = 117/386 (30%), Gaps = 22/386 (5%)

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           Y  +  +  + +++           +  + G  D             S+L    +   + 
Sbjct: 221 YGIYKFITSMLRAM--HSTTGDEDALEPLRGRYDAQYYRLVRFYYECSNLRYLTSLISVP 278

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
            L    P ++    G++       + ++       P  +          D  S      +
Sbjct: 279 KLAPQPPNLLA---GEEDKPSLPKRPVNEPEXEPTPPPKATIPDAEPINDFWSTEAKRQQ 335

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
             +E          +   +++   +     D   + +          ++Q +   Y Q  
Sbjct: 336 EEYEAEQRRLQSQWEEQQRQQMLAQQQAQRDFEEQ-QRLQAEQQRLAQEQLMANQYQQQT 394

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           + RL +L Q+ +   + Y R      ++  +    +  +                     
Sbjct: 395 QGRLAELEQENLNARAQYERDQLMLQQYDKRVKDLEEQLNQINTNFNSQNSSK------- 447

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                   +++   ++L   R     L KL+S L  + ++          +    +   +
Sbjct: 448 ------DDLIRSLQEQLNTWRTKYEALAKLYSQLRQEHLDLLQTTKSLKLKAASAQEAID 501

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             ++L+R+++   L  A  +      R  +++          L + K E+   I +    
Sbjct: 502 KRERLEREMKTKNLELA--DMIRERDRALHEKDRLTGGNREELEKLKRELRMAIERAENA 559

Query: 609 GEAEKTAILISILHEVHIQIHQIESQ 634
            E  K + + ++L + + ++  +E  
Sbjct: 560 -ERAKGSEISAMLSKYNREMADLEES 584


>gi|225851497|ref|YP_002731731.1| peptide chain release factor 2 [Persephonella marina EX-H1]
 gi|225646418|gb|ACO04604.1| peptide chain release factor 2 [Persephonella marina EX-H1]
          Length = 370

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 40/105 (38%), Gaps = 2/105 (1%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           EQ       I + L        L +LD+++     W+ T +A   ++           + 
Sbjct: 10  EQLENKFNNIKEILDPESLRGELFKLDQEMGRPDFWNDTKKA--QEISSKRNAIANKIQE 67

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
              + ++  +I++ I  +  + + E    +   +  +  +I ++E
Sbjct: 68  IESVEKKINDIKEFIELLELEYDKETEDEIKREIEALDKEITKLE 112


>gi|195114264|ref|XP_002001687.1| GI16985 [Drosophila mojavensis]
 gi|193912262|gb|EDW11129.1| GI16985 [Drosophila mojavensis]
          Length = 951

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 48/151 (31%), Gaps = 21/151 (13%)

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
            L +      EL +++     + +  +     ++ +   ++    LL++L          
Sbjct: 708 HLENYELQRQELIRMYEHRIEELIRTQDGATSDLKRSHNDK-VEALLQKLAECNTRYSDI 766

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQK-----------EEIEKQIAQVTAKGEAE 612
               E     +R+  +Q   L ++      ++           +E E +I++     E  
Sbjct: 767 VPDYEHAKQRIRELEKQLEDLQRKLVEHEEKQNKMYLHMYQQGQEAE-RISRADQAMELA 825

Query: 613 KTA--------ILISILHEVHIQIHQIESQE 635
           +           L+  L     ++  I + E
Sbjct: 826 QRQPDSKVSINELLHQLQSTQDELENIRASE 856


>gi|154295530|ref|XP_001548200.1| hypothetical protein BC1G_13390 [Botryotinia fuckeliana B05.10]
 gi|150844016|gb|EDN19209.1| hypothetical protein BC1G_13390 [Botryotinia fuckeliana B05.10]
          Length = 1066

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/284 (10%), Positives = 90/284 (31%), Gaps = 19/284 (6%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           ++ +  ++ + +    + +       +  ++R+          + A +           +
Sbjct: 717 KNVNEALQRHHEEDMRRKLRVEHDRTNQDYQRQLNEVKKAAEADIARIRAESDRIK---Q 773

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D + +   +Q   +   +  +          +   ++ +   +    +   ++      L
Sbjct: 774 DHQKQLEQAQKGSEANAESVRAEHERVVQDYQRQLEHVQKTAEANSERVRRRADAEIADL 833

Query: 477 SKKPSLREAALLLTLINH-PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
             K    E+ L     NH   +   + +  A+    +  LQ+    +     +      E
Sbjct: 834 QSKIERLESDLSKANENHVQDLQIARDEHAANKAQQDASLQRAEDKIKEMEEQASTAQEE 893

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
                       E +K+++ Q   A    A  E     +++  +QA+    +      + 
Sbjct: 894 V-------AKAKEKIKEMEEQAITAQTKVAKAE---EKIKEMEKQAITAQTKVAKAEEKI 943

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +E+EKQ      K    +       + E+  Q +  +++ A  E
Sbjct: 944 KEMEKQANTAQTKVAKAE-----EKIKEMEKQANTAQTKAARAE 982


>gi|146424321|gb|AAI41867.1| CCDC88B protein [Homo sapiens]
          Length = 1240

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 91/268 (33%), Gaps = 13/268 (4%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
             +         +  E+      +E        +     ++   +R    + +  RL+ L 
Sbjct: 836  RAQSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRG---KELGARLEHLQ 892

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            ++          + ++      +    ++ +++ L     SK+ +L E  +    +    
Sbjct: 893  RELEQAALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKIRALQLEE-E 951

Query: 497  ILQEQYQ--ELADIRYDNNELQKLWSF-LFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            + Q +     L   +    +L +  +  L          + E+   +   +     L  L
Sbjct: 952  LFQLRQGPAGLGPKKRAEPQLVETQNVRLIEVERSNAMLVAEKAALQGQLQHLEGQLGSL 1011

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
              + ++  L S   + +   ++    +   L  + + L R+ E +E+++         E+
Sbjct: 1012 QGRAQELLLQSQRAQEHSSRLQA---EKSVLEIQGQELHRKLEVLEEEVRAARQS--QEE 1066

Query: 614  TAILISILHEVHIQIHQIES-QEAMIEG 640
            T      L   H  + Q++  QEA +EG
Sbjct: 1067 TRGQQQALLRDHKALAQLQRRQEAELEG 1094



 Score = 38.3 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 65/210 (30%), Gaps = 19/210 (9%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L+    +   E     +        +  +          L++ + S    + E A L  
Sbjct: 940  ELKIRALQLEEELFQLRQGPAGLGPKKRAEPQLVETQNVRLIEVERSNAMLVAEKAALQG 999

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
             + H         +L  ++      Q+L                E+    +  +     L
Sbjct: 1000 QLQHLE------GQLGSLQ---GRAQELLLQSQRAQEHSSRLQAEKSVLEIQGQELHRKL 1050

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQIAQVTAKG 609
            + L+ +VR A         +  + R   Q  L  +K    L R Q+ E+E  + +     
Sbjct: 1051 EVLEEEVRAARQ-------SQEETRGQQQALLRDHKALAQLQRRQEAELEGLLVRHRDL- 1102

Query: 610  EAEKTAILISILHEVHIQIHQIESQEAMIE 639
                   L     E+  +  Q+++Q A +E
Sbjct: 1103 -KANMRALELAHRELQGRHEQLQAQRASVE 1131


>gi|99034341|ref|ZP_01314372.1| hypothetical protein Wendoof_01000828 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 623

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANI 571
           + +KL   L     ++     E++  RL        E++       +         +A  
Sbjct: 384 DNKKLAKLLIKHGADRSLIKDEDLIDRLNSMCDQPSEVVPSTFSHSKTHNATETPEKAEK 443

Query: 572 VDVRQGYQQALA-----LYKRFRLLSRQKEEIE-------KQIAQVTAKGEAEKTAILIS 619
           V+ R+   + L        K+  LL ++ +++E        ++ +   K +         
Sbjct: 444 VEKRKAKLKELRTQLKDEQKKNELLKQKIQDLESKNTTLNSELEKTKTKTDEVPLEKAQK 503

Query: 620 ILHEVHIQI----HQIESQEAMIE 639
            L E+   I     ++++ E + E
Sbjct: 504 ELTELKSYITGHGARLDTLEKLNE 527


>gi|7715579|gb|AAF68101.1|AF255548_1 PspA [Streptococcus pneumoniae]
          Length = 231

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L ++       +  L++++ +  +      A+ 
Sbjct: 82  ELEKLLDNLDPEGKTQDELDKEAAEAELDKKADELQNKVADLEKEISNLEI--LLGGADP 139

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            D     Q  LA   +   L + ++E++  + ++   G+ E+T
Sbjct: 140 EDDTAALQNKLA--TKKAELEKTQKELDAALNELGPDGDEEET 180



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 54/129 (41%), Gaps = 8/129 (6%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L +        +  L++++ +  +      A+ 
Sbjct: 1   ELEKLLDSLDPEGKTQDELDKEAAEAELNKKVESLQNKVADLEKEISNLEI--LLGGADS 58

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE-AEKTAILISILHEVHIQIHQ 630
            D     Q  LA   +   L++++ E+EK +  +  +G+  ++     +   E+  +  +
Sbjct: 59  EDDTAALQNKLAA--KQAELAKKQTELEKLLDNLDPEGKTQDELDKEAAEA-ELDKKADE 115

Query: 631 IESQEAMIE 639
           ++++ A +E
Sbjct: 116 LQNKVADLE 124


>gi|190360667|ref|NP_001121951.1| tripartite motif-containing protein 39 [Sus scrofa]
 gi|56805544|dbj|BAD83393.1| tripartite motif-containing 39 [Sus scrofa]
          Length = 488

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 69/187 (36%), Gaps = 2/187 (1%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
             + R       +   S     ++   +   I   ++  + ++ L+   Y++ E   L  
Sbjct: 70  RKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYEDQEAVCLIC 129

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ- 579
            +            ++  Q   E+   + L+ L++++++     ++ E    ++++  + 
Sbjct: 130 AISHTHRAHTVVPLDDATQEYKEK-LQKCLEPLEQKLQEITRCKSSEEKKPGELKRLVES 188

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +   + K F  L R+ +E ++ +     + E +    L      +  +   +    A +E
Sbjct: 189 RRQQILKEFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKRRDLAHLAAEVE 248

Query: 640 GFGKMSG 646
           G    SG
Sbjct: 249 GKCLQSG 255


>gi|268557266|ref|XP_002636622.1| C. briggsae CBR-SMA-1 protein [Caenorhabditis briggsae]
          Length = 4061

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/294 (9%), Positives = 97/294 (32%), Gaps = 20/294 (6%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
             +     A  K    +          +  +       +    +  +     +++  + + 
Sbjct: 968  RKFDKLEADMKTNGGTQLKHINDIANDLISEGHGQSRQIENRQHKINAMWENLERLRKQR 1027

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                   +R+        +        +++  R+ +     Q L +       L  K + 
Sbjct: 1028 AVRLEATERVADFDTTCESAREWMLGKFEQLDRNPNDVKSLQNLERDLKP---LEDKIAA 1084

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
             E        +HP       +++A       EL+ L + L     E+     +   + + 
Sbjct: 1085 LEKLAAAVKKDHPEEAAAIERKIA-------ELRTLHADLLRRAQEKMLLAEQSQGKEMF 1137

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK---EEIE 599
            E    +++  +++     G+       ++ +  +  ++   L ++ +    +    +E+ 
Sbjct: 1138 ESALRDMMSWIEK--TRKGMMEDVHPVDVAEAEELLKKHYELGEQIKDKKYEVEYCQELG 1195

Query: 600  KQIAQVTA-----KGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            +++ + +      + + +     ++ L +++ +   I  Q+  ++ F + S R+
Sbjct: 1196 RRLLERSPRMPKVEEQLQALVSEMAALRDLYRRRDTILKQQLDLQLFNRESERI 1249


>gi|268579273|ref|XP_002644619.1| C. briggsae CBR-LFI-1 protein [Caenorhabditis briggsae]
          Length = 2318

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQV 605
             E ++++++ + D        E  I ++   +++ L   +     L R+  E+E +++Q+
Sbjct: 1023 KERIERIEKNILDRYHDDELAEHKIREINDRWKRELERLENDKDDLERRIRELEDELSQI 1082

Query: 606  TAKGEA------EKTAILISILHEVHIQIHQI 631
                +       E      + + ++   I  +
Sbjct: 1083 GRGNDKTENDITELKRKHAAEIDKLKSDISAL 1114



 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 32/315 (10%), Positives = 98/315 (31%), Gaps = 44/315 (13%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     A      ++   ++    +   +   +T D+  +L   +    N I+++     
Sbjct: 570 KLRASEAERVAAEKARKFLEDELAKLQASFQKSTTDDARKLRDEMDEHTNSIQEEFKTR- 628

Query: 424 YSQAIRDRLQQLFQK---------YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
               +  R++ L ++          + +          + + R ++  +Q      + K 
Sbjct: 629 -IDELNRRIENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEERETQLRYADDIRKN 687

Query: 475 KLSKKPSLREA---------ALLLTLINHPAILQEQYQELADIRYDNNELQK-------- 517
                  LRE           +L  L +         Q+L +I+   ++ QK        
Sbjct: 688 IQKDLDDLREKYDRVYSDNEKILGELEHAQKAAHLAEQQLKEIKIQRDDYQKQKDEHARH 747

Query: 518 ---LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
              +   L ++   ++                 + +   + Q+      +   +  I   
Sbjct: 748 LFDIRHKLETEIKGRQDLQKNGARSNDELDKLRQTISDYESQINLLRRHNDELDTTIKGH 807

Query: 575 RQGYQQALALYK-------RFRLLSRQKEEIEKQI--AQVTAKGE----AEKTAILISIL 621
           +    Q             +   L+++ ++ ++++   ++   G+     E    L + L
Sbjct: 808 QGKLTQLENELHSRSGEIEKLNDLNQRLQKEKQEVLNQKLKLDGDVQALKETIRKLENEL 867

Query: 622 HEVHIQIHQIESQEA 636
            ++  +  ++  +EA
Sbjct: 868 EKLRTENKELVGKEA 882



 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/308 (9%), Positives = 83/308 (26%), Gaps = 47/308 (15%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
                     + +   L     L + + E       + R      +   +     +    +
Sbjct: 1679 NLQDAEEERRALESRLASAKTLLRSQEEALKQRDEERRQMKSKMVAAELQARGKEAQLRH 1738

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             ++ +++ L+       T+        ++    R Q     R   S   K +L       
Sbjct: 1739 LNEQLKN-LRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDSNKLQLQIASFES 1797

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDN-------NELQKLWSFLFSDFVEQKYFLPEE 536
            E  +L          ++  +    +R  +       ++  KL   L      +       
Sbjct: 1798 ERQILT---------EKIKELDGALRLSDSKVQDMKDDTDKLRRDLTKAESVENELRKTI 1848

Query: 537  IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
              Q      +  L  QL     +    +   +    ++     +     +R   ++ +  
Sbjct: 1849 DIQSKTSHEYQLLKDQLVNTQNELNGANTRKQQLENELLNARSEVRDYKQRVHDVNNRVA 1908

Query: 597  EIEKQIAQVTAKGE------------------------------AEKTAILISILHEVHI 626
            E+++Q+    ++                                  +  + +  L ++  
Sbjct: 1909 ELQRQLQDANSEKNRVEDRFLSVEKVVNTMRTTETDLRQQLETAKNEKRVALKELEDIKR 1968

Query: 627  QIHQIESQ 634
            ++ Q+E++
Sbjct: 1969 RLSQLENE 1976


>gi|17550052|ref|NP_508635.1| Temporarily Assigned Gene name family member (tag-278)
           [Caenorhabditis elegans]
 gi|2496852|sp|Q11102|TG278_CAEEL RecName: Full=Putative protein tag-278
          Length = 1130

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 84/275 (30%), Gaps = 16/275 (5%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                    +E+     +       +R  E       +   ++    +  +   KD + R
Sbjct: 132 QTLEETVAEYERQKYNVMGTFSEYRERVAERERKLEAEYSGKIIALSEEVLGAKKDFEAR 191

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               QA++D+ ++  ++ + +     +   +    R        L Q  +++ +  ++  
Sbjct: 192 MKSFQALQDKFEREKEQALEKLRKEHQKEIQVLEQRFSDTQLLNLEQKYIIEIQRLEEER 251

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                         ++  E+ +            Q L+    +          E +    
Sbjct: 252 K-------------SLRTEKERLGETFEMKLRRAQSLYETELTAAKMLYTKELEALRDH- 297

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            E    ELL + D            ++ +  D+        AL K+     ++ + + K+
Sbjct: 298 EEALKEELLARQDEFHDRLQELQLQSKRSREDLVSCKNDVTALEKKLHNKEKEVQTLTKE 357

Query: 602 IAQVTAKGEAE--KTAILISILHEVHIQIHQIESQ 634
           + QV  +   +  +   + S   E   +  Q E +
Sbjct: 358 LDQVKTETNDKIRRLTEVTSEFAEYRKKFQQQEEE 392


>gi|23271229|gb|AAH32853.1| Golgi autoantigen, golgin subfamily a, 1 [Homo sapiens]
 gi|123983292|gb|ABM83387.1| golgi autoantigen, golgin subfamily a, 1 [synthetic construct]
 gi|307685323|dbj|BAJ20592.1| golgi autoantigen, golgin subfamily a, 1 [synthetic construct]
          Length = 767

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/259 (10%), Positives = 80/259 (30%), Gaps = 31/259 (11%)

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                ++     + D   +    Q I+++L+   +K+  + S   ++ ++N   +  +  
Sbjct: 62  RRNEQIRKLEARLSDYAEQVRNLQKIKEKLEIALEKH--QDSSMRKFQEQNETFQANRAK 119

Query: 463 SQRLMQSSLVKGKLSKKPSL----REAALLLTLINHPA-----ILQEQYQELADIRYDNN 513
               +  +L +        +    +E  +L   +         + Q + +      +   
Sbjct: 120 MAEGLALALARKDQEWSEKMDQLEKEKNILTAQLQEMKNQSMNLFQRRDEMDELEGFQQQ 179

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           EL K+   L            E        R      ++L    + +   S   E     
Sbjct: 180 ELSKIKHMLLKKEESLGKMEQEL---EARTRELSRTQEELMNSNQMSSDLSQKLEELQRH 236

Query: 574 ---VRQGYQQALALYK----RFRLLSRQKEEIEKQIAQ---------VTAKGEAEKTAIL 617
              + +     +A       +   L ++++E++  I Q            + + +    L
Sbjct: 237 YSTLEEQRDHVIASKTGAESKITALEQKEQELQALIQQLSIDLQKVTAETQEKEDVITHL 296

Query: 618 ISILHEVHIQIHQ-IESQE 635
              +  +  ++ Q +  +E
Sbjct: 297 QEKVASLEKRLEQNLSGEE 315


>gi|14591553|ref|NP_143635.1| chromosome assembly protein [Pyrococcus horikoshii OT3]
 gi|3258234|dbj|BAA30917.1| 1179aa long hypothetical chromosome assembly protein [Pyrococcus
           horikoshii OT3]
          Length = 1179

 Score = 39.5 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 41/115 (35%), Gaps = 4/115 (3%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           K    +    R+      + +  + + +        +  + I D  +   +      + +
Sbjct: 692 KALENQSFELRIRMSDVEKEISLISKDLEKLIKEEESLRSEIEDSERKIAEIDETISKKK 751

Query: 590 L----LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
                L  + E +EK+  ++    E  +   +   + EV  +I ++  + + +EG
Sbjct: 752 DEVAKLKGRIERLEKRRDKLKKALENPEAREVTEKIREVEREIAKLREELSRVEG 806


>gi|322700992|gb|EFY92744.1| nuclear segregation protein (Bfr1), putative [Metarhizium acridum
           CQMa 102]
          Length = 478

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 69/208 (33%), Gaps = 8/208 (3%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            +   +  +      +      +K+ +    +  + +      +  K   +P+  +    
Sbjct: 17  AESQARPTRPDEKAFNEALAKAEKDHKASMDRLNAIKAKIDIALPNKNKDQPNPTQKRRQ 76

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +     I Q+Q    +      +++++L   + S   EQK    +             
Sbjct: 77  ELIAQANEIRQKQAGGKSARTTKLDQIKRLDEQVRSRIAEQKAAKAK--VSFKSAEDVDR 134

Query: 549 LLKQLDRQVRDAGLWSATTEANIVD------VRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +  L++QV    +     +  + D      VR+ + Q     K+   L  + ++I+  +
Sbjct: 135 QIAALEKQVNSGTMKLVDEKKALSDISNLRKVRKNFGQFDDSQKQIDELRAKIKDIKDSM 194

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQ 630
                K  +++   + + L  +  +  +
Sbjct: 195 EDPEQKALSDQYNKIQAELDTIKAEQDE 222


>gi|290980412|ref|XP_002672926.1| kinesin [Naegleria gruberi]
 gi|284086506|gb|EFC40182.1| kinesin [Naegleria gruberi]
          Length = 1080

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 82/241 (34%), Gaps = 35/241 (14%)

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            I+ +  +  Y + I ++L Q+ +K + +   +           D        M+S    
Sbjct: 595 KIQCEDYKKMY-EEISEKLTQIEKKLVEDEDNHNAKEISQLSSDDPSHQLIEKMKSKNKL 653

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN--ELQKLWSFLFSDFVEQKY 531
                  + RE              +E+  E+A    D+   E Q+L++   +   +   
Sbjct: 654 LMEQLNLAKRENL----------KAREKAAEIALKSLDDKIYEYQQLFNQYQTAVEKSSR 703

Query: 532 FLPEE-----------IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
                              +   +   E +  L  ++  A   +   E + +  ++  + 
Sbjct: 704 LSISANSSTTASLRSAFEDKGNSQKLKETIDDLTVKLNTARKKNTEMEISKMKAQETEK- 762

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL-------HEVHIQIHQIES 633
                ++ + L  + ++++++I++  +  + E+   L   +         +  Q+ ++E 
Sbjct: 763 --MHKEQIQNLETELKKLKEEISKKQST-DMEQVEQLRKEITTLKDAEENLKEQMKKLEQ 819

Query: 634 Q 634
           +
Sbjct: 820 E 820


>gi|240103229|ref|YP_002959538.1| Chromosome segregation protein SMC (smc1) [Thermococcus
           gammatolerans EJ3]
 gi|239910783|gb|ACS33674.1| Chromosome segregation protein SMC (smc1) [Thermococcus
           gammatolerans EJ3]
          Length = 1192

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 10/122 (8%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L + LF   + +     +    ++ +R    LL +      +      T +     + + 
Sbjct: 698 LRNELFELRMRRSELSKDL---QVAQREMERLLAEDRALGEEIETAEETIKKLEGRIEEY 754

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
             +   L  R   L R++E++++ +       E  +   L + + EV  QI +++ + + 
Sbjct: 755 RGEIAKLRGRIERLERKREKLKRAL-------ENPEARELNAKIREVEGQIAKLKEELSR 807

Query: 638 IE 639
           +E
Sbjct: 808 VE 809


>gi|291287714|ref|YP_003504530.1| Peptidase M23 [Denitrovibrio acetiphilus DSM 12809]
 gi|290884874|gb|ADD68574.1| Peptidase M23 [Denitrovibrio acetiphilus DSM 12809]
          Length = 386

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 73/228 (32%), Gaps = 22/228 (9%)

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y ++I  +L+   +    + S       K +  +++   S R     L           
Sbjct: 68  QYQKSISKKLESKLRNAEKDLSFINFQRTKLSNRQEELKDSIRAANFYLSGAG------- 120

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  LL  +I    +  E  +  A ++  +   ++L+         QK     E+  R  
Sbjct: 121 -ETDLLEAII----LSDEIAEVAAGMQIISRVNERLFEMAKELEQNQKKLDETEVKLRHK 175

Query: 543 ERGFGELLK----QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++     L+     L        L +        D +   +    L  +   L ++ +E+
Sbjct: 176 QKEISMTLQDKNASLKEYQSKKILVNQLYRIAAEDEKIKNEYVSMLRDQQNELEQKIKEM 235

Query: 599 EKQIAQVTAKGEAEKTAILISILHE-----VHIQIHQIESQEAMIEGF 641
           E    +   + + +        + +     +  +I +    +  I+GF
Sbjct: 236 ELTQIKQGEERKFDGLDKNFKHMRKKLQWPIKGEITETFGTKK-IQGF 282


>gi|195354933|ref|XP_002043950.1| GM13695 [Drosophila sechellia]
 gi|194129195|gb|EDW51238.1| GM13695 [Drosophila sechellia]
          Length = 661

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEK 600
            E+   +  ++  +    A   +   +    D  +  Q+ +   +R           +E+
Sbjct: 398 EEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEE 457

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Q+ Q+ A  +  +       L  +  ++ + ++ EA+
Sbjct: 458 QLKQLQAAKDELELRQ--KELQAMLQRLEEAKNMEAV 492



 Score = 38.3 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 94/273 (34%), Gaps = 7/273 (2%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K + ++     +           E+          +LE++  N    I+++K    +
Sbjct: 246 DQHKMSKDEWEQSIMTWWQEHRSMLREDAMMEYLKIAQDLEMYGVNYFE-IRNKKGTDLW 304

Query: 425 SQAIRDRLQQLFQKYI-TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                  L    Q    T   G+     +N    ++K   + + + +      + +  + 
Sbjct: 305 LGVDALGLNIYEQDDRLTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRIN 364

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  L L + NH   ++ +  +  D++    + ++  +    +  + +  L         +
Sbjct: 365 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQ 424

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           + + + LKQ+   +  +       +  I  + +  +Q  A       L  +++E++  + 
Sbjct: 425 QEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEEQLKQLQAA---KDELELRQKELQAMLQ 481

Query: 604 QVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
           ++      E      L   +    +++ +I+ +
Sbjct: 482 RLEEAKNMEAVEKLKLEEEIMAKQMEVQRIQDE 514


>gi|194874119|ref|XP_001973346.1| GG13399 [Drosophila erecta]
 gi|190655129|gb|EDV52372.1| GG13399 [Drosophila erecta]
          Length = 1338

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 70/225 (31%), Gaps = 13/225 (5%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
               R   +  +  R  ++ +   T                + +    R     L   K 
Sbjct: 327 SSIKRAAPAAFVEPRFLEILRPQFTPGPALRTPSSVAPPLDNPELRQLREELQLLRGQKS 386

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             K  L E   +   I++  +++ + Q +A       ELQ+    L          +  +
Sbjct: 387 EDKLKLLELERMR--IHNEQLMEFKSQIMAQQVLLQRELQRSRHELREA-----QDVSAK 439

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + + L E      L  LD+++ +  L +   E  +   R           +     +Q +
Sbjct: 440 LKRELDEIAESIELLTLDKEMAEERLETLQMELEMAQERNDELSLDVEILKAEQEEQQGQ 499

Query: 597 EIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            IEK   Q        + GE  +       L E  +++    +QE
Sbjct: 500 RIEKSEKQIGAGVTTQSAGEFLRLEQYNQRLRETVVRLRDTLAQE 544


>gi|149063941|gb|EDM14211.1| rCG23467, isoform CRA_a [Rattus norvegicus]
          Length = 1935

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1566 NQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1626 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1685

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1745

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1746 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1806 KGGKKQLQKLEARVRELENELEAEQKRNA 1834


>gi|145513276|ref|XP_001442549.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409902|emb|CAK75152.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1074

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 60/149 (40%), Gaps = 6/149 (4%)

Query: 492 INHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCE-RGFG 547
           +N+  + + E  Q++  +     E Q+L + +     E +       ++ + + + +   
Sbjct: 361 LNNAELTISELNQKIKSLSLLQQENQRLQNEIEEIHRENEKLSQDNSQLLKDIDKFKLLE 420

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           +  +QL+ +V          +  +    +   +     K  +   R+ EE+E Q  Q+  
Sbjct: 421 QEKQQLESKVSMLASEIERLKVQLKQKNEKILEQQEDLKNLQEQLREIEELENQNQQLLK 480

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEA 636
             + E+   +I  L +   +++ +E + A
Sbjct: 481 --DLEQKDKIIEELEQKLQELNVLEQKLA 507


>gi|165973992|ref|NP_001107189.1| myosin-1 [Canis lupus familiaris]
 gi|83026762|gb|ABB96408.1| fast myosin heavy chain 2X [Canis lupus familiaris]
          Length = 1953

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1579 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQSTLDAEIRSRNDAIRLKKKMEG 1638

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1639 DLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQIHLDDAL-----RGQEDLKEQ--LAM 1691

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1692 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1751

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1752 ISQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1811

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1812 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1843


>gi|118377729|ref|XP_001022042.1| Kinesin motor domain containing protein [Tetrahymena thermophila]
 gi|89303809|gb|EAS01797.1| Kinesin motor domain containing protein [Tetrahymena thermophila
           SB210]
          Length = 625

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 74/249 (29%), Gaps = 21/249 (8%)

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            +    +   +       K+   R+       D++  +F +   +               
Sbjct: 30  RERHDMMNSIINELNQSSKNDLKRHLLLT--SDKITNIFTQIQADKENVNSINLPLQADT 87

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY------QELADIRYD 511
                     + S  +         +       LI+   + Q  +      Q+L D    
Sbjct: 88  KDNKNGSNFKRKSDEQSLGLPSTVNQNFNFQQPLISSNNLRQAVFKPGADMQDLVDQNMI 147

Query: 512 NNELQKL----WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
             +LQ +    +  +   + E +      +  +         +  +D+ + +        
Sbjct: 148 LEQLQAISQKNFKLVKELYEEAENIANSNLIWKKEIIQMNNHIANIDKTISNLECNF--- 204

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
              + +V+    Q + L+     L  +  +IE +        + +K +  +S L E+  Q
Sbjct: 205 ---VSEVKAVKNQVMNLHITSDQLQEEM-DIEFE-NNQNLMEQNQKYSQELSQLLEIKKQ 259

Query: 628 IH-QIESQE 635
           +  +IE  E
Sbjct: 260 LEKEIEETE 268


>gi|328791962|ref|XP_001121570.2| PREDICTED: hypothetical protein LOC725761 [Apis mellifera]
          Length = 879

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI- 602
               +  K ++++     +     + N  D R+  ++AL L    +   RQ++E+  ++ 
Sbjct: 603 ESLIQAPKSVNKRNSLDKIDEKKRKLNEEDARKKREEALRLQTEEKRRKRQEKELRNKLA 662

Query: 603 AQVTAKGEAEKTAILISILHE---VHIQIHQIESQE 635
            +   K + EK         E   +  Q+ + + +E
Sbjct: 663 REAKEKQDMEKRQKAEKEREEKARLAQQLQEKQREE 698


>gi|330914905|ref|XP_003296831.1| hypothetical protein PTT_07027 [Pyrenophora teres f. teres 0-1]
 gi|311330861|gb|EFQ95083.1| hypothetical protein PTT_07027 [Pyrenophora teres f. teres 0-1]
          Length = 1117

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/269 (8%), Positives = 79/269 (29%), Gaps = 25/269 (9%)

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
           +   ++         + + +R  +       DE   L       I  ++ +      ++ 
Sbjct: 229 EKELDEYKQRLSEYAEKVKRRHADEGIREEMDELRRLADERAAEIERLESKLEDAKSAED 288

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             D+L    +    E         +      +         ++   G   K   L E A 
Sbjct: 289 ELDKLDAELESARAELKRRDTLLDEQEDQIKKLENKLEQAHNTQSAGNEEKDRQLEEQA- 347

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERG 545
                     + E  ++L    + +++   L        + ++    +++  +L   ER 
Sbjct: 348 --------KRIAELEEQL--QSFKDSQHDDLAEK--DRQLTERSEKIQDLEDQLRSVERE 395

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
               +++L  ++  A          +       ++ L      +   ++   +E  +  +
Sbjct: 396 KDAQIEKLQSKLASAADGKDEQIRELEQQLDEVERELDEADEQK--RQELAVLEDHLRSM 453

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQ 634
             + +        +   E+  ++   +++
Sbjct: 454 EREKD--------AEFRELQRRLQTAQNE 474


>gi|310798479|gb|EFQ33372.1| hypothetical protein GLRG_08651 [Glomerella graminicola M1.001]
          Length = 566

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 82/252 (32%), Gaps = 40/252 (15%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY-SQAIRDRLQQLFQKYITEHSGY 446
            ET        +    L   + +  + + ++  R     +  ++R+++L  +     +  
Sbjct: 156 EETSTAKEQAEESYQALLERVNHLKSTLGERLKRDRAELEEAKERIEELESQNEELQNDA 215

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
               ++ A+ + +   + R   S   +  LS++  ++E   L+ L+              
Sbjct: 216 KASQEEVAKLKGELQDTSREATSLRSRSNLSQQNWVKEREELMRLV-------------- 261

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
                      L   + +       +    + +R  +    E + +L+ QV +       
Sbjct: 262 ---------ASLKEEVETTTNAMGEWEVIAMEERSVKESLAEKVSELEEQVAN------- 305

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
                  +R GY+ A A       +    ++  ++I     +   E        L  +  
Sbjct: 306 -------LRDGYESAAAERDNQSHVIDNLQKALREIQDARKRELREMVETSEEQLQAMKK 358

Query: 627 QIHQIE--SQEA 636
            +H+ +  + EA
Sbjct: 359 LVHEADSRATEA 370


>gi|296214577|ref|XP_002753688.1| PREDICTED: myosin-7 [Callithrix jacchus]
          Length = 1935

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1566 NQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1626 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1685

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1745

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1746 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1806 KGGKKQLQKLEARVRELENELEAEQKRNA 1834


>gi|257126291|ref|YP_003164405.1| excinuclease ABC subunit B [Leptotrichia buccalis C-1013-b]
 gi|257050230|gb|ACV39414.1| excinuclease ABC, B subunit [Leptotrichia buccalis C-1013-b]
          Length = 657

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            +E+++R   +    L   ++ +     +  +  +  I    +   +A+  YK  + + +
Sbjct: 561 IDEVNRRREVQEKYNLENNINPKSIVREIAESIVDYEIEKENEA-NKAIKQYKSEKDIEK 619

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           + ++++KQI ++  +   E+   L   ++E+   + ++
Sbjct: 620 EIKKLDKQIKKLAEELNFEEAIKLRDKMNELKKLLIEL 657


>gi|221113859|ref|XP_002157926.1| PREDICTED: similar to myosin heavy chain [Hydra magnipapillata]
          Length = 2086

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 78/245 (31%), Gaps = 10/245 (4%)

Query: 397  TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
                   L   +     + K   +R  Y + +  R+     +       + R+W    + 
Sbjct: 906  EEMRDERLSKIISQFQAYCKGSIMRSEYKKMVAQRIGLAVIQRNVRKYLFLRHWSW-WKL 964

Query: 457  RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
              +  P   + ++        ++    +  L         + +E  + +A        LQ
Sbjct: 965  YTKVQPLLSVARAEDEMRAKEEELEAAKEQLKKDAEAKKKMEEELTEAMAQKEKLYASLQ 1024

Query: 517  KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
                 L +   E K    + +  +L      E L++LD +     +     +     + +
Sbjct: 1025 AETDRLITI--EDKLLNLQTVKDKLESS-LNEALEKLDGEEHSVLVLEEKIQEAEEKIDE 1081

Query: 577  GYQQALALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILISILH----EVHIQIHQ 630
              ++   L      L  +K+  +KQI  +      + E  + + +       E+  +  Q
Sbjct: 1082 LTEKTEELQSNISRLETEKQNRDKQIDTLNEDIRKQDETISKMNAEKKHVDEELKDRTEQ 1141

Query: 631  IESQE 635
            +++ E
Sbjct: 1142 LQAAE 1146


>gi|241622068|ref|XP_002407400.1| paramyosin, putative [Ixodes scapularis]
 gi|215500979|gb|EEC10473.1| paramyosin, putative [Ixodes scapularis]
          Length = 497

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 88/280 (31%), Gaps = 16/280 (5%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           D    ++   +  F+     S     M    +             +++      +  ++ 
Sbjct: 183 DAREAMKQKVQELFKPAQYASFGEHAMEIFAKLGKLREKLNKFLEDVKKVTGEKVEMLRK 242

Query: 418 --QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
             ++ R    + I++ +Q            +G   K   +H +      R ++  +   +
Sbjct: 243 LIKETREEIKKKIQELIQGSSDTQTNLKQKFGELKKVGDQHAENIKAQIRALKERVSDAR 302

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            + K  ++E   L     + +  +   +  A +     +L K    +     E+   L E
Sbjct: 303 DALKQKVQE---LFKPAEYASFGEHAMEIFAKLENLREKLNKFLEDVKKVTGEKVDKLRE 359

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-----ALYKRFRL 590
            I +    +     +++L      A         +  D        L     AL ++F +
Sbjct: 360 LIKE--TRQEIKTKIQELIEGSSSATTALYQASDDDEDAEAYIIDTLKDISKALKEKFLV 417

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           L  +  +  + I Q       ++  +L   L E+  Q+ Q
Sbjct: 418 LGERIAQKVQDIKQAFG----QRAEVLKKQLQELKGQLRQ 453


>gi|237838791|ref|XP_002368693.1| 200 kDa antigen p200, putative [Toxoplasma gondii ME49]
 gi|211966357|gb|EEB01553.1| 200 kDa antigen p200, putative [Toxoplasma gondii ME49]
          Length = 1296

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 36/93 (38%)

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           E       ++L     ++    A  +A+        +   A  K    L +   E+E++ 
Sbjct: 382 EAQLAAAEEKLTSLANESREKEAQVKAHAEKAESLERLLQAARKEKDALEQANAELERRT 441

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +  ++ +++  A+   +  E+  +   +E +E
Sbjct: 442 REAESETKSKVEAMEAELKKEMEKREKDMEKRE 474


>gi|195483891|ref|XP_002090473.1| GE12790 [Drosophila yakuba]
 gi|194176574|gb|EDW90185.1| GE12790 [Drosophila yakuba]
          Length = 1749

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 79/226 (34%), Gaps = 12/226 (5%)

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRY---WKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +R    + +  +L ++  +   + +         +      ++K       +  LV+ K 
Sbjct: 680 MRDEQIKELAQQLDEVTTQLNVQKADSSALDDMLRLQKEGTEEKSTLLEKTEKELVQIKE 739

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
               +  E   L   ++    L E  ++L   + +    Q     L    VEQ+  L + 
Sbjct: 740 EASKNQHEKEQLEKQLSELKQLAE-QEKLVREKTETEVNQI---ALEKKTVEQQLALKQN 795

Query: 537 IHQRLCERGFGE--LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   ++       L+++        L    +   +  ++Q  ++    +++      +
Sbjct: 796 ELEDFQKKQSETEVYLREIKDINTQKDLKLVESGEFLKKIQQQLEEKTQAHEKLHADWEE 855

Query: 595 KEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            ++ ++ I    +   +    K+A     L  V +Q+ Q++ Q A 
Sbjct: 856 LKKNQETIIKQKEQELQQIESKSAESEGSLKAVQVQLEQLQKQAAA 901


>gi|187956882|gb|AAI58011.1| Cep110 protein [Mus musculus]
          Length = 2333

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 59/150 (39%), Gaps = 11/150 (7%)

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           TL+     +Q++ +EL  I  D   ++K  + L S   EQ                  + 
Sbjct: 649 TLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNAS----------LQQA 698

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
              L     +        +A    ++Q  ++ L   +  + + + + E E++  +  A G
Sbjct: 699 QGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLR-DALG 757

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +A+ +       +E+  Q+ Q++   ++++
Sbjct: 758 KAQSSEEKQQENNELRTQLKQLQDDNSLLK 787



 Score = 37.2 bits (84), Expect = 8.7,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 68/223 (30%), Gaps = 14/223 (6%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              L+  +S+ +     +  +  + E   +     +  +  + +   ++  + +L      
Sbjct: 842  ADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKF 901

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADI----RYDNNELQKLWSFLFSDFVEQKYFL 533
             K        +  L N    LQE  + +  I         E  +    + +   E +   
Sbjct: 902  DKRQHNAR--IQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKK 959

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             E+   +    G  E LK L + V  +   +A       D  +     +    + R    
Sbjct: 960  REDARSQEQFLGLDEELKSLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEEL 1019

Query: 594  QKEEI--EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            Q+ E    + +        AE    L+  L      + + E Q
Sbjct: 1020 QEAERFSREAMQAAKDLSRAEAEIELLQHL------LREREGQ 1056


>gi|183600088|ref|ZP_02961581.1| hypothetical protein PROSTU_03620 [Providencia stuartii ATCC 25827]
 gi|188022373|gb|EDU60413.1| hypothetical protein PROSTU_03620 [Providencia stuartii ATCC 25827]
          Length = 523

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 36/344 (10%), Positives = 100/344 (29%), Gaps = 36/344 (10%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           D D        +   L     + G R     +  G +        G     +   ++   
Sbjct: 134 DFDITTNATPEQIRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFRGHHDQIESEDKNRSQ 193

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY------YSQAIRDRLQQ- 434
                    +N   +  ++    +  + +   +I D  +R Y          I   +   
Sbjct: 194 QAKNGMLLRDNIFGSIEEDAIRRDFTVNSLYYNIDDFSVRDYVGGLNDLKAGIIRLIGDP 253

Query: 435 ----------LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                     + +          R     A+   +  P  R + S+ +  +  K     +
Sbjct: 254 ETRYREDPVRMLRAVRFACKLDMRIEPNTAQPIQRLAPLLREIPSARLFEESLKLLQAGQ 313

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNE---LQKLWSFLFS----DFVEQKYFLPEEI 537
                 ++    + ++ +  ++  R+ NN    ++K+   +           K   P  +
Sbjct: 314 GYATYNMLKEYHLFEQLFPVISS-RFTNNNDSPMEKIIDQVLKNTDFRLKNDKRVNPAFL 372

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +      E  ++L ++      +       + D+     +++A+ KR     R   +
Sbjct: 373 FAVMLWYPVTEHAEKLSQE--GGLAYYDAFALAMNDILDEQCRSIAIPKRITTTMRDIWQ 430

Query: 598 IEKQI-----AQVTAKGEAEKTAILISILHEVHI---QIHQIES 633
           ++ ++      +     E  K       L E+     + ++++ 
Sbjct: 431 LQLRLPRRQGRRANKLMEHPKFRAAF-DLLELRANVERRNELQE 473


>gi|145534331|ref|XP_001452910.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420609|emb|CAK85513.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1070

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 43/346 (12%), Positives = 106/346 (30%), Gaps = 22/346 (6%)

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD-SF 362
           + Q+ +L     R           +      I+ +   L    +V  +  S G+D +   
Sbjct: 389 QDQIIILRTEIERQQKIIQEQQSKIDKQKLEIENLELKLQQTQQVISLYKSPGKDINLDQ 448

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
                    + L   +       +  E +          +++ I  K     +K+Q  + 
Sbjct: 449 YISQQDEELQNLRRVTQQQKQNNFDLEKQQMQAYIKKLESQVFIEYKA-NIQLKEQLEQS 507

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKK----NARHRDQKGPSQRLMQSSLVKGKLSK 478
             S++      Q   +Y        +Y +K     A+   Q    QR  +  +   +L  
Sbjct: 508 QLSKSQASTASQDQYEYEILEKNLQKYKRKYEKLKAKQSSQDQNQQRSKKDEIAIAELEA 567

Query: 479 KPSLREAAL--LLTLINHPAI-----LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
           K  L+E  +  L   +N         + E    +  +   N   +K    +        Y
Sbjct: 568 KLQLKEKQISELELKLNKNKFDTTAKIVELESSIEQLEKQNKLYKKSIQDI-ETRQSSLY 626

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                + Q+L  +      +   +  +    ++   +     +++  +       + + L
Sbjct: 627 KQDNGLVQQLQRQITDSQNESNLQLRQVQERFNQQIQQLQQQLQKEQKARFLAESQLKDL 686

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILH---EVHIQIHQIESQ 634
           +     I+ +I +   K            +    E+  +I ++++Q
Sbjct: 687 T-----IKLEIQEKQQKQVTTSIQNSYQDISNGGELQKEIQRLQAQ 727


>gi|45384214|ref|NP_990618.1| lamin-A [Gallus gallus]
 gi|125961|sp|P13648|LMNA_CHICK RecName: Full=Lamin-A; Flags: Precursor
 gi|63556|emb|CAA34762.1| unnamed protein product [Gallus gallus]
          Length = 657

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 96/280 (34%), Gaps = 32/280 (11%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             R     A       +L    +  KR  EN   +   + A+LE  L      ++D+ LR
Sbjct: 130 QARLKDLEALLNSKEAALSTA-LGEKRNLENEVRDLRAQVAKLEGALSEAKKQLQDEMLR 188

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                   +RLQ L ++   + + Y    ++  R  + +       +    + KL++   
Sbjct: 189 RV---DAENRLQTLKEELEFQKNIYSEELRETKRRHETRLVEIDNGRQQEFESKLAEALQ 245

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                       H   ++    EL        E  K          E+   +    H+ L
Sbjct: 246 DLRR-------QHEDQIRHYRDELEKTYGAKLENAK-------QSAERNSSMAGAAHEEL 291

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +      +  L  ++       A  EA + +V +   +     +R         E E++
Sbjct: 292 QQTHIR--IDSLSAELSQLQKQLAAKEAKLREVEEALSREREGGRRL------LAEKERE 343

Query: 602 IAQVTAKGEA--EKTAILISILHEVHIQIHQ----IESQE 635
           +A++ A+ +   ++   L+ I   + ++I+     +E +E
Sbjct: 344 MAEMRARMQQQLDEYQELLDIKLALDMEINAYRKLLEGEE 383


>gi|330963252|gb|EGH63512.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 1162

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELER 203

Query: 601 QIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           Q+ ++  + + AEK     +   ++  Q+  +  Q A+ E  G
Sbjct: 204 QLERLHRQAQAAEKYQEYKAEERQLKAQLSALRWQ-ALNEQVG 245


>gi|330879148|gb|EGH13297.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 1162

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELER 203

Query: 601 QIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           Q+ ++  + + AEK     +   ++  Q+  +  Q A+ E  G
Sbjct: 204 QLERLHRQAQAAEKYQEYKAEERQLKAQLSALRWQ-ALNEQVG 245


>gi|326677191|ref|XP_003200777.1| PREDICTED: myomegalin-like [Danio rerio]
          Length = 998

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 69/183 (37%), Gaps = 8/183 (4%)

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
           +G    L Q            S RE + + +L    A++ +    L        E +++ 
Sbjct: 716 RGKGLELEQVCEAWRSAQGVHSEREESYMRSLRERDALISQLQTSLHT---RTKEAEEMT 772

Query: 520 SFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           + L S        + EE+  RL   ER F ELL    RQ ++          N +  R+ 
Sbjct: 773 AVLLSKVSVGAGEVAEELKSRLQLKERLFQELLSDRSRQTQE-HHSQVQDLLNTISSREH 831

Query: 578 YQQALALYKRFRLLSR--QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           Y +  A      +  +  + +E+ KQ+     +   E T  L+  L     +  + ++Q 
Sbjct: 832 YIKDSAGRVGQVMAEQTARLQELRKQLGSANPELTQEDTQALMDELQMTLRREREAQTQL 891

Query: 636 AMI 638
           +++
Sbjct: 892 SIL 894


>gi|320103898|ref|YP_004179489.1| hypothetical protein Isop_2363 [Isosphaera pallida ATCC 43644]
 gi|319751180|gb|ADV62940.1| protein of unknown function DUF820 [Isosphaera pallida ATCC 43644]
          Length = 271

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 74/229 (32%), Gaps = 24/229 (10%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L Y +   I++ L+ LFQ +          W  N     ++     ++     KG    
Sbjct: 47  TLHYQWIVVIKENLELLFQNHPHVFVAADLLWYPNPNDDRERTAPDVMVVFGRPKGPRGS 106

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL----WSFLFSDFVEQKYFLP 534
                E  +   +          ++ L+          KL       +   ++ +     
Sbjct: 107 YKMWLEDHIPAHV---------VFEILSPGNTKAELDHKLDFYQRHGVEEYYLFEPEPER 157

Query: 535 EEIHQRLCERGFGELL--KQLDRQVRDAGLWSATTEANIVDVR----QGYQQALALYKRF 588
           + +  RL + G    L  +Q    V          +   + +     + +   L L++R 
Sbjct: 158 QALEIRLRQEGRLNALTPQQTIGFVSPRLGIRFQPDLKPMRILRPDGEPFVSFLELHQRV 217

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           +   RQ+ E E+Q A+       ++    +  L E    I Q+ SQ A 
Sbjct: 218 QA-ERQRAEAERQRAEAEH----QRAENALKQLQEQAQLIEQLRSQLAA 261


>gi|315047560|ref|XP_003173155.1| chromosomes protein 4 structural maintenance [Arthroderma gypseum CBS
            118893]
 gi|311343541|gb|EFR02744.1| chromosomes protein 4 structural maintenance [Arthroderma gypseum CBS
            118893]
          Length = 1430

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 83/234 (35%), Gaps = 24/234 (10%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + +   L+          +   +   +    +     +QR ++    + K S     RE 
Sbjct: 937  RELETELKTTKDAIPKVETAIQKLQLEIDSAKRNLADTQRRVKELSEEHKPSAADEKREV 996

Query: 486  ALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFV---EQKYFLPEEIHQR- 540
            +L  T+      L+++ ++L +++     E+Q L   +          +    + + ++ 
Sbjct: 997  SLEKTI----KTLEKEIEKLRSEMAGVEEEIQVLQDKIMEVGGVKLRGQKAKVDGLKEQI 1052

Query: 541  --LCERGFGELLKQLDRQVRDAGLWSATTEAN------IVDVRQGYQQALALYKRFRLLS 592
              L +      + +   +        +  +A         D+ +   +A +  K    + 
Sbjct: 1053 SLLTDEISNAEVSKSKNEKLRIKHEKSRADAEAELETVQEDIEKLDAEAKSQAKAVSGIK 1112

Query: 593  RQKEEIEKQIAQVTAK-----GEAEKTAILISILHEVHIQIHQ--IESQEAMIE 639
            ++ EE E+ +     +      E ++    ++    V I++     ESQ+A+IE
Sbjct: 1113 QKTEEAEEALQTKQEELTALKTELDEKTAELNETRAVEIEMRNKLEESQKALIE 1166


>gi|302670932|ref|YP_003830892.1| chromosome segregation protein Smc [Butyrivibrio proteoclasticus
           B316]
 gi|302395405|gb|ADL34310.1| chromosome segregation protein Smc [Butyrivibrio proteoclasticus
           B316]
          Length = 1185

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/287 (8%), Positives = 93/287 (32%), Gaps = 20/287 (6%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRE--TENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
           +       EK +  ++  ++        T+    N   +   L+  +      I D  ++
Sbjct: 237 QKQQLEDAEKNLEIAVNSLEQARTSYDKTKEEYENIQKKLEILDAEIDEARARITDSSVK 296

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + +  ++  L +K     +    + ++  +    K   +   +   +  K     +
Sbjct: 297 K---EKLEGQIGILNEKIKAASANDAHFKQR-MQDEQTKISEKNSEKDKYLADKAEIDEA 352

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           + E +     +    + +E    +  I   N+E+++  + +              I  +L
Sbjct: 353 VEELS-----VKRNEVRKELDAVILKISNINDEIEECKNTIIETLG-----TRATIKSKL 402

Query: 542 CE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIE 599
                  E +     ++    + + + E+   ++ +  +            ++++++E E
Sbjct: 403 SSLETMKEQVNIRKAELTSKLVRARSDESRQEEIIKKLRDEFDAITATISEMNKKQKETE 462

Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
           +++ ++         +         +   ++  + +     EG+G  
Sbjct: 463 QEVVRIREGMNLKDTELRKTTEKYQQEKSRLEALANLTERYEGYGGS 509


>gi|293365746|ref|ZP_06612453.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|307703955|ref|ZP_07640895.1| hypothetical protein SMSK23_1783 [Streptococcus oralis ATCC 35037]
 gi|291315749|gb|EFE56195.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|307622506|gb|EFO01503.1| hypothetical protein SMSK23_1783 [Streptococcus oralis ATCC 35037]
          Length = 1445

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 14/105 (13%)

Query: 14  HIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72
            + I  +     ++  R+   + +  YWA    HD    SF  +  K  ++ +S ++ GD
Sbjct: 10  SLDILEVARSLGMEMKRK---SHREYYWA---EHD----SFKIDTVKNTWHWYSQNLFGD 59

Query: 73  HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117
            ++ +  +   S+ E++  L    G   P   P  E+++     L
Sbjct: 60  TINLVQQMQNVSYKEAMVFL--ETG-SFPEAKPVEEERKPFNYTL 101


>gi|284802037|ref|YP_003413902.1| hypothetical protein LM5578_1792 [Listeria monocytogenes 08-5578]
 gi|284995179|ref|YP_003416947.1| hypothetical protein LM5923_1744 [Listeria monocytogenes 08-5923]
 gi|284057599|gb|ADB68540.1| hypothetical protein LM5578_1792 [Listeria monocytogenes 08-5578]
 gi|284060646|gb|ADB71585.1| hypothetical protein LM5923_1744 [Listeria monocytogenes 08-5923]
          Length = 1023

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 54/403 (13%), Positives = 116/403 (28%), Gaps = 28/403 (6%)

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
            A     K    D  +  +  I ++ G                +       +        
Sbjct: 9   QAFGAYAKKEVIDFEKLGTEQIFVISGKTGAGKSTIFD-----AISFAIFGKANTFDRES 63

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE--DPDSFIRCYGKTA 370
            S R     D +   +  A++  D +        +        G    P           
Sbjct: 64  FSMRSHFATDKEITEVTLAFRLKDKIYQISRIPQQEIAKQRGNGTTTSPQKAELYELIND 123

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             KL+  S+  V+M  +   +             +   +  +  + D K +    Q +  
Sbjct: 124 EMKLLASSVRDVNMKMEELIQLNVDQFRQILMIPQGEFRELL--VSDSKEKEVILQRLAH 181

Query: 431 RL------QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR- 483
            +        L++K            KK A   +   P   +   +  +  + +  +++ 
Sbjct: 182 TVYYEKVENLLWEKQKQAEILVVEARKKVAELAELSLPGVEVSGKTTSEISVLQAEAIQS 241

Query: 484 EAALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-----EI 537
           E  +L  L N  +I+++Q  + +  +     +L   W  L     E      E      I
Sbjct: 242 EQMILTELENKLSIIRKQTSEAVEKVTLAKEQLLD-WQNLDKYTEEIATLEIEKEFYQAI 300

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV----DVRQGYQQALALYKRFRLLSR 593
             RL        L+  D           T E        +  +   Q   + K+   L+ 
Sbjct: 301 EVRLEAAKRASNLRSQDALCIRLKEQLETAEQTEKQVAFEAEEVKVQFSHVKKQKEALAE 360

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           ++ E+E     +    E E   + +  +  +  +  ++E +EA
Sbjct: 361 KEAELEINKRTLFQLEEMEPKILEL-EMISIQKRRAELEWKEA 402


>gi|239787821|ref|NP_001155180.1| syncoilin isoform 2 [Homo sapiens]
          Length = 476

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 44/117 (37%), Gaps = 6/117 (5%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QA 581
            +   +      E++ Q+L           L    R +  +      +  D+ + Y+ Q 
Sbjct: 288 LAQLRDAYQKQKEQLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQF 347

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           L L +R    ++  +  + +I ++      E    L +   ++ +Q   +E Q A++
Sbjct: 348 LRLLERKEAGTKALQRTQAEIQEM-----KEALRPLQAEARQLRLQNRNLEDQIALV 399


>gi|119627916|gb|EAX07511.1| syncoilin, intermediate filament 1, isoform CRA_a [Homo sapiens]
          Length = 476

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 44/117 (37%), Gaps = 6/117 (5%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QA 581
            +   +      E++ Q+L           L    R +  +      +  D+ + Y+ Q 
Sbjct: 288 LAQLRDAYQKQKEQLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQF 347

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           L L +R    ++  +  + +I ++      E    L +   ++ +Q   +E Q A++
Sbjct: 348 LRLLERKEAGTKALQRTQAEIQEM-----KEALRPLQAEARQLRLQNRNLEDQIALV 399


>gi|119493031|ref|XP_001263771.1| hypothetical protein NFIA_070450 [Neosartorya fischeri NRRL 181]
 gi|119411931|gb|EAW21874.1| hypothetical protein NFIA_070450 [Neosartorya fischeri NRRL 181]
          Length = 1042

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 59/200 (29%), Gaps = 19/200 (9%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKK-----NARHRDQKGPSQRLMQSSLVKGKL 476
               Q     + +L Q+             +      +    ++    +   S       
Sbjct: 604 ELQLQQASSTISELQQEISHLEKHARSTSARVEELSASLDTARRELEDQRRNSQETTNSE 663

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            +K   RE  LL ++      ++E  +E   +R    +   L   L +   E+   L   
Sbjct: 664 REKARTRELDLLASITEKADQIEELQEETRSLR---EDNDALRQTLDTVSKEKGTSLEHT 720

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY----QQALALYKRFRLLS 592
                      + + +L+  V    L  A  +  I  ++        Q  AL K+    S
Sbjct: 721 -------AALKQDVGRLEECVEHGKLLLAQKDEEISRLQADQGHMNSQMEALQKKLDEES 773

Query: 593 RQKEEIEKQIAQVTAKGEAE 612
            Q +E++  +         E
Sbjct: 774 AQVQELKAALRNAEETHRTE 793


>gi|83770538|dbj|BAE60671.1| unnamed protein product [Aspergillus oryzae]
          Length = 1056

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 87/272 (31%), Gaps = 11/272 (4%)

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD---QKLRYYYS-- 425
            +++                E       +   +    L+     +K+   +  +  Y   
Sbjct: 727 IQQINESLQRHHAQELAALEEQHQHAKNELVKQYGEQLRTIDYQLKETSVEYEKKSYKAR 786

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           Q     +  L +K  +  +  GR  +++         + + ++SS  K   +      E 
Sbjct: 787 QHHEAEVADLQKKIRSLEAELGRAQEQHTGEAANLKATIQALRSSADKANEN---HAAEV 843

Query: 486 ALLLTLIN--HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           + L   +        Q Q Q  A++   N  +  L S + +   + +    E        
Sbjct: 844 SNLHNTVQKLDFEASQSQRQHAAEVSNLNQTIHSLQSEVEALKQQNESNSAEHKITNERL 903

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   +  K+   Q   A     T++   ++ R    +     K  R L + K E + Q  
Sbjct: 904 QKELDTAKEKATQDIQAVHDDYTSKCAALEKRAEEAEQKTGQKLQRELEKVKLEAKDQAE 963

Query: 604 QVTAKGEAEKT-AILISILHEVHIQIHQIESQ 634
           +     E E         + E+  ++ +++S+
Sbjct: 964 EARKAKENESVAQKSTQEIDELRKELEKLKSE 995


>gi|195480012|ref|XP_002101103.1| GE17431 [Drosophila yakuba]
 gi|194188627|gb|EDX02211.1| GE17431 [Drosophila yakuba]
          Length = 646

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEK 600
            E+   +  ++  +    A   +   +    D  +  Q+ +   +R           +E+
Sbjct: 383 EEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEE 442

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Q+ Q+ A  +  +       L  +  ++ + ++ EA+
Sbjct: 443 QLKQLQAAKDELELRQ--KELQAMLQRLEEAKNMEAV 477



 Score = 38.3 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 94/273 (34%), Gaps = 7/273 (2%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K + ++     +           E+          +LE++  N    I+++K    +
Sbjct: 231 DQHKMSKDEWEQSIMTWWQEHRSMLREDAMMEYLKIAQDLEMYGVNYFE-IRNKKGTDLW 289

Query: 425 SQAIRDRLQQLFQKYI-TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                  L    Q    T   G+     +N    ++K   + + + +      + +  + 
Sbjct: 290 LGVDALGLNIYEQDDRLTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRIN 349

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  L L + NH   ++ +  +  D++    + ++  +    +  + +  L         +
Sbjct: 350 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQ 409

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           + + + LKQ+   +  +       +  I  + +  +Q  A       L  +++E++  + 
Sbjct: 410 QEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEEQLKQLQAA---KDELELRQKELQAMLQ 466

Query: 604 QVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
           ++      E      L   +    +++ +I+ +
Sbjct: 467 RLEEAKNMEAVEKLKLEEEIMAKQMEVQRIQDE 499


>gi|262118216|ref|NP_115627.6| coiled-coil domain-containing protein 88B [Homo sapiens]
 gi|167006538|sp|A6NC98|CC88B_HUMAN RecName: Full=Coiled-coil domain-containing protein 88B; AltName:
            Full=Brain leucine zipper domain-containing protein;
            AltName: Full=Hook-related protein 3; Short=HkRP3
          Length = 1476

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 23/220 (10%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            +      ++ R  QL ++      G      K    +  +          L++ + S   
Sbjct: 934  KEEALMELKTRALQLEEELFQLRQGPAGLGPK----KRAEPQLVETQNVRLIEVERSNAM 989

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             + E A L   + H         +L  ++      Q+L                E+    
Sbjct: 990  LVAEKAALQGQLQHLE------GQLGSLQ---GRAQELLLQSQRAQEHSSRLQAEKSVLE 1040

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIE 599
            +  +     L+ L+ +VR A         +  + R   Q  L  +K    L R Q+ E+E
Sbjct: 1041 IQGQELHRKLEVLEEEVRAARQ-------SQEETRGQQQALLRDHKALAQLQRRQEAELE 1093

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              + +            L     E+  +  Q+++Q A +E
Sbjct: 1094 GLLVRHRDL--KANMRALELAHRELQGRHEQLQAQRASVE 1131



 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 91/268 (33%), Gaps = 13/268 (4%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
             +         +  E+      +E        +     ++   +R    + + DRL+ L 
Sbjct: 836  RAQSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRG---KELGDRLEHLQ 892

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            ++          + ++      +    ++ +++ L     SK+ +L E       +    
Sbjct: 893  RELEQAALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEE-E 951

Query: 497  ILQEQYQ--ELADIRYDNNELQKLWSF-LFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            + Q +     L   +    +L +  +  L          + E+   +   +     L  L
Sbjct: 952  LFQLRQGPAGLGPKKRAEPQLVETQNVRLIEVERSNAMLVAEKAALQGQLQHLEGQLGSL 1011

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
              + ++  L S   + +   ++    +   L  + + L R+ E +E+++         E+
Sbjct: 1012 QGRAQELLLQSQRAQEHSSRLQA---EKSVLEIQGQELHRKLEVLEEEVRAARQS--QEE 1066

Query: 614  TAILISILHEVHIQIHQIES-QEAMIEG 640
            T      L   H  + Q++  QEA +EG
Sbjct: 1067 TRGQQQALLRDHKALAQLQRRQEAELEG 1094


>gi|159479326|ref|XP_001697744.1| hypothetical protein CHLREDRAFT_176449 [Chlamydomonas reinhardtii]
 gi|158274112|gb|EDO99896.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 1742

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 79/270 (29%), Gaps = 51/270 (18%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD--------QKGPSQRLMQS 469
              LR  +S  +   L +   +                +            +  ++     
Sbjct: 953  SMLRAAHSAELAQMLDEHDAELGELRDALHEAGPAQPKDTVSMVEAALYPERVARSAGGD 1012

Query: 470  SLVKGKLSKKPSLREAALLLT------LINHPA-----ILQEQYQELADIRYDN-NELQK 517
            S V+ KL ++ +  E  L         +          + +   +EL +++  +  E+Q 
Sbjct: 1013 SQVESKLLQQIAALEQQLTDLQDDHERIAADGEAQLSLLCERHAEELEELQARHGAEVQD 1072

Query: 518  LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
            L   L     + +    E             L  +LDR         A  +  + ++++ 
Sbjct: 1073 LQQHLAELQHQVQSAQLEAAAAMAASASAAMLQAELDRTGEAHAAEVAALQLQVGELQEQ 1132

Query: 578  YQQALALYKRFRL-------------------LSRQKEEIEKQIAQVTA-KGEAEKTAIL 617
             + A A  +                       L ++  ++++Q+      + +   +A L
Sbjct: 1133 LEAAAASQQDEVAASVQPLQRAADGHVVEVAILQQRVADLQEQLEAARQLEQDNAASAEL 1192

Query: 618  ISIL-----------HEVHIQIHQIESQEA 636
             + L             +  Q+  ++ Q A
Sbjct: 1193 QAELDGVREAHTSELQALQQQLTDLQGQLA 1222


>gi|149026004|gb|EDL82247.1| rCG28678 [Rattus norvegicus]
          Length = 1915

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 68/199 (34%), Gaps = 9/199 (4%)

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  +  A  R+     ++L +    +    +   + +  L   L  +   +    
Sbjct: 1119 QEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVA 1178

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE----IHQRLCERGFGELLKQLDRQVR 558
            +E  D++  +  L++    L     + +    E+        L  +   E +++L   V 
Sbjct: 1179 KENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVA 1238

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSRQKE--EIEKQIAQVTAKGEAEKT 614
                  +     +       Q+ +   K    +LL  + E  E +KQ+ +        + 
Sbjct: 1239 KRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEM 1298

Query: 615  AILISILHEVHIQIHQIES 633
              L ++  ++H  + +++S
Sbjct: 1299 ENL-NLAQQIHQNLEEMKS 1316


>gi|116283899|gb|AAH40232.1| CCDC88B protein [Homo sapiens]
          Length = 696

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 23/220 (10%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      ++ R  QL ++      G      K    +  +          L++ + S   
Sbjct: 70  KEEALMELKTRALQLEEELFQLRQGPAGLGPK----KRAEPQLVETQNVRLIEVERSNAM 125

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
            + E A L   + H         +L  ++      Q+L                E+    
Sbjct: 126 LVAEKAALQGQLQHLE------GQLGSLQ---GRAQELLLQSQRAQEHSSRLQAEKSVLE 176

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIE 599
           +  +     L+ L+ +VR A         +  + R   Q  L  +K    L R Q+ E+E
Sbjct: 177 IQGQELHRKLEVLEEEVRAARQ-------SQEETRGQQQALLRDHKALAQLQRRQEAELE 229

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             + +            L     E+  +  Q+++Q A +E
Sbjct: 230 GLLVRHRDL--KANMRALELAHRELQGRHEQLQAQRASVE 267


>gi|24640672|ref|NP_727290.1| moesin, isoform B [Drosophila melanogaster]
 gi|7290977|gb|AAF46416.1| moesin, isoform B [Drosophila melanogaster]
          Length = 649

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEK 600
            E+   +  ++  +    A   +   +    D  +  Q+ +   +R           +E+
Sbjct: 383 EEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEE 442

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Q+ Q+ A  +  +       L  +  ++ + ++ EA+
Sbjct: 443 QLKQLQAAKDELELRQ--KELQAMLQRLEEAKNMEAV 477



 Score = 38.3 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 94/273 (34%), Gaps = 7/273 (2%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K + ++     +           E+          +LE++  N    I+++K    +
Sbjct: 231 DQHKMSKDEWEQSIMTWWQEHRSMLREDAMMEYLKIAQDLEMYGVNYFE-IRNKKGTDLW 289

Query: 425 SQAIRDRLQQLFQKYI-TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                  L    Q    T   G+     +N    ++K   + + + +      + +  + 
Sbjct: 290 LGVDALGLNIYEQDDRLTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRIN 349

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  L L + NH   ++ +  +  D++    + ++  +    +  + +  L         +
Sbjct: 350 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQ 409

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           + + + LKQ+   +  +       +  I  + +  +Q  A       L  +++E++  + 
Sbjct: 410 QEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEEQLKQLQAA---KDELELRQKELQAMLQ 466

Query: 604 QVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
           ++      E      L   +    +++ +I+ +
Sbjct: 467 RLEEAKNMEAVEKLKLEEEIMAKQMEVQRIQDE 499


>gi|47228208|emb|CAG07603.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1145

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 53/158 (33%), Gaps = 25/158 (15%)

Query: 511  DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
               + + L + L            + + +RL +    +L    ++         +     
Sbjct: 872  QTRQYKALRNHLLE---NTPKSDHKAMLKRLKDEQTRKLAILAEQYDHSINDMLSKQALR 928

Query: 571  IVDVRQGYQQALALYKRFRLL-----------------SRQKEEIEKQI---AQVTAKGE 610
            + + ++   +AL +  +  L                   R+ +++E+++     +  +  
Sbjct: 929  LDETQEAEYKALLMQLQQELELLNAYQSKIKIHTDTQHDREVKDLEQRVSIRRALLEQRI 988

Query: 611  AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             E+   L +   E    + + ++ E  IE F   S RL
Sbjct: 989  EEEMLSLQNERSERIRTLLERQATE--IESFDSESLRL 1024


>gi|71655633|ref|XP_816377.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70881500|gb|EAN94526.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 963

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 63/207 (30%), Gaps = 4/207 (1%)

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
              K + +H       K     R +K            KG++S      E      +   
Sbjct: 493 SLAKLLQKHRQELIDSKDEEDRRVRKFIEDVTFSLETRKGRVSTAMERAERVKKSAMREQ 552

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQ 552
            ++ + +      +   N  L++L   L ++           +  +L +  +   E   +
Sbjct: 553 KSLSERKTSLREKMLKQNEGLRELQGQLLNE-KMGIDTEIATLEAKLAKLRQASAEKEAE 611

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           L     +     A  E+   D+    ++             Q +  E  +          
Sbjct: 612 LQDVTSNLRRMEAKQESMENDIDSLIKEEEDRMHCAAADLEQLQR-ESDVLHAETIEFDT 670

Query: 613 KTAILISILHEVHIQIHQIESQEAMIE 639
           K  +L+S L +   +I   E + A++E
Sbjct: 671 KRELLLSELQDGVTRIDSYEQRRALLE 697


>gi|332203095|gb|EGJ17163.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA47901]
          Length = 1179

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E   + A +R +   L+ L   + +     +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAADEASLRSEEAALKTLQDQMATLTERLEVIKSQGEQARIQEQGLSLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  I  + +G  QA       R   ++  K+ +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEEIDRLSEGDWQADKEKCQDRLAAIASDKQNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 833


>gi|242266586|gb|ACS91147.1| SLA2 [Microsporum gypseum]
          Length = 1068

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 43/387 (11%), Positives = 116/387 (29%), Gaps = 21/387 (5%)

Query: 249 YNFFGALNYL-QKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307
           Y  +  +  + +        R  +  +    G  D             S+L    +   +
Sbjct: 218 YGIYKFITSMLRAMHSSKSIRKLNLRVGASSGRYDAQYYRLVRFYYECSNLRYLTSLISV 277

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
             L    P ++    G++       + ++       P  +          D  S      
Sbjct: 278 PKLAPQPPNLLA---GEEDKPSLPKRPVNEPEREPTPPPKATIPDAEPINDFWSTEAKRQ 334

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
           +  +E          +   +++   +     D   + +          ++Q +   Y Q 
Sbjct: 335 QEEYEAEQRRLQSQWEEQQRQQMLAQQQAQRDFEEQ-QRLQAEQQRLAQEQLMANQYQQQ 393

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            + RL +L Q+ +   + Y R      ++  +    +  +                    
Sbjct: 394 TQGRLAELEQENLNARAQYERDQLMLQQYDKRVKDLEEQLNQINTNFNSQNSSK------ 447

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
                    +++   ++L   R     L KL+S L  + ++          +    +   
Sbjct: 448 -------DDLIRSLQEQLNTWRTKYEALAKLYSQLRQEHLDLLQTTKSLKLKAASAQEAI 500

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           +  ++L+R+++   L  A  +      R  +++          L + K E+   I +   
Sbjct: 501 DKRERLEREMKTKNLELA--DMIRERDRALHEKDRLTGGNREELEKLKRELRMAIERAEN 558

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQ 634
             E  K + + ++L + + ++  +E  
Sbjct: 559 A-ERAKGSEISAMLSKYNREMADLEES 584


>gi|315047126|ref|XP_003172938.1| SLA2 [Arthroderma gypseum CBS 118893]
 gi|242266557|gb|ACS91123.1| SLA2 [Microsporum gypseum]
 gi|311343324|gb|EFR02527.1| SLA2 [Arthroderma gypseum CBS 118893]
          Length = 1049

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 41/386 (10%), Positives = 117/386 (30%), Gaps = 22/386 (5%)

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           Y  +  +  + +++           +  + G  D             S+L    +   + 
Sbjct: 202 YGIYKFITSMLRAM--HSTTGDEDALEPLRGRYDAQYYRLVRFYYECSNLRYLTSLISVP 259

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
            L    P ++    G++       + ++       P  +          D  S      +
Sbjct: 260 KLAPQPPNLLA---GEEDKPSLPKRPVNEPEREPTPPPKATIPDAEPINDFWSTEAKRQQ 316

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
             +E          +   +++   +     +   + +          ++Q +   Y Q  
Sbjct: 317 EEYEAEQRRLQSQWEEQQRQQMLAQQQAQREFEEQ-QRLQAEQQRLAQEQLMANQYQQQT 375

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           + RL +L Q+ +   + Y R      ++  +    +  +                     
Sbjct: 376 QGRLAELEQENLNARAQYERDQLMLQQYDKRVKDLEEQLNQINSNFNSQNSSK------- 428

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                   +++   ++L   R     L KL+S L  + ++          +    +   +
Sbjct: 429 ------DDLIRSLQEQLNTWRTKYEALAKLYSQLRQEHLDLLQTTKSLKLKAASAQEAID 482

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             ++L+R+++   L  A  +      R  +++          L + K E+   I +    
Sbjct: 483 KRERLEREMKTKNLELA--DMIRERDRALHEKDRLTGGNREELEKLKRELRMAIERAENA 540

Query: 609 GEAEKTAILISILHEVHIQIHQIESQ 634
            E  K + + ++L + + ++  +E  
Sbjct: 541 -ERAKGSEISAMLSKYNREMADLEES 565


>gi|227552014|ref|ZP_03982063.1| YvlB family protein [Enterococcus faecium TX1330]
 gi|227178919|gb|EEI59891.1| YvlB family protein [Enterococcus faecium TX1330]
          Length = 539

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           ++++  ++     + ++  +L   L +   +    +  +  +R  +    ++L +L  + 
Sbjct: 54  IKKEADKVTASHKEKDQASQLIDELENGEEKISEPVDPKEKERQDQENLEKILDELATEA 113

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFR----------LLSRQKEEIEKQIAQVTA 607
                      A   D +    +      +                Q++ +E +I ++ A
Sbjct: 114 NKTSARLDEVNAQFADNKAARNEKQEALMQLNTKEELGELTEEELAQRQTLEAEIKELEA 173

Query: 608 KGEA--EKTAILISILHEVHI 626
            G+   E+   L + L ++  
Sbjct: 174 TGDTLLEEQLKLEAELKDIRK 194


>gi|225681029|gb|EEH19313.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 656

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 7/118 (5%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           +        I   L E+         D+  +  G+     +  + +  +  +QA      
Sbjct: 87  DDARAQNAAIIDELKEQVKKAETVS-DQYRKQLGVLQLRLDEAVSEQSRLEEQAHEKDVS 145

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH------EVHIQIHQIESQEAMIE 639
              L  + +E+ +QI  +    EAE+T +            ++   I +++   A  E
Sbjct: 146 LNALQAEVKELTRQIRDLQQAHEAERTGMAQEKEQQGKREGDLQSTIQRLKETIAQKE 203


>gi|218526911|sp|Q29GR8|MOEH_DROPS RecName: Full=Moesin/ezrin/radixin homolog 1
          Length = 593

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEK 600
            E+   +  ++  +    A   +   +    D  +  Q+ +   +R           +E+
Sbjct: 330 EEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEEMERSQRDLLEAQEMIRRLEE 389

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Q+ Q+ A  +  +       L  +  ++ + ++ EA+
Sbjct: 390 QLKQLQAAKDELELRQ--KELQSMLQRLEEAKNMEAV 424



 Score = 38.3 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 95/273 (34%), Gaps = 7/273 (2%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K + ++     +           E+          +LE++  N    I+++K    +
Sbjct: 178 DQHKMSKDEWEQSIMTWWQEHRSMLREDAMMEYLKIAQDLEMYGVNYFE-IRNKKGTDLW 236

Query: 425 SQAIRDRLQQLFQKYI-TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                  L    Q    T   G+     +N    ++K   + + + +      + +  + 
Sbjct: 237 LGVDALGLNIYEQDDRLTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRIN 296

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  L L + NH   ++ +  +  D++    + ++  +    +  + +  L         +
Sbjct: 297 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQ 356

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           + + + LKQ+  ++  +       +  I  + +  +Q  A       L  +++E++  + 
Sbjct: 357 QEYEDRLKQMQEEMERSQRDLLEAQEMIRRLEEQLKQLQAA---KDELELRQKELQSMLQ 413

Query: 604 QVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
           ++      E      L   +    +++ +I+ +
Sbjct: 414 RLEEAKNMEAVEKIKLEEEIMAKQMEVQRIQDE 446


>gi|194890874|ref|XP_001977399.1| GG19021 [Drosophila erecta]
 gi|190649048|gb|EDV46326.1| GG19021 [Drosophila erecta]
          Length = 646

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEK 600
            E+   +  ++  +    A   +   +    D  +  Q+ +   +R           +E+
Sbjct: 383 EEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEE 442

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Q+ Q+ A  +  +       L  +  ++ + ++ EA+
Sbjct: 443 QLKQLQAAKDELELRQ--KELQAMLQRLEEAKNMEAV 477



 Score = 37.9 bits (86), Expect = 4.7,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 94/273 (34%), Gaps = 7/273 (2%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K + ++     +           E+          +LE++  N    I+++K    +
Sbjct: 231 DQHKMSKDEWEQSIMTWWQEHRSMLREDAMMEYLKIAQDLEMYGVNYFE-IRNKKGTDLW 289

Query: 425 SQAIRDRLQQLFQKYI-TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                  L    Q    T   G+     +N    ++K   + + + +      + +  + 
Sbjct: 290 LGVDALGLNIYEQDDRLTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRIN 349

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  L L + NH   ++ +  +  D++    + ++  +    +  + +  L         +
Sbjct: 350 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQ 409

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           + + + LKQ+   +  +       +  I  + +  +Q  A       L  +++E++  + 
Sbjct: 410 QEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEEQLKQLQAA---KDELELRQKELQAMLQ 466

Query: 604 QVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
           ++      E      L   +    +++ +I+ +
Sbjct: 467 RLEEAKNMEAVEKLKLEEEIMAKQMEVQRIQDE 499


>gi|189458793|ref|NP_036148.2| centriolin isoform 1 [Mus musculus]
          Length = 2333

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 59/150 (39%), Gaps = 11/150 (7%)

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           TL+     +Q++ +EL  I  D   ++K  + L S   EQ                  + 
Sbjct: 649 TLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNAS----------LQQA 698

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
              L     +        +A    ++Q  ++ L   +  + + + + E E++  +  A G
Sbjct: 699 QGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLR-DALG 757

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +A+ +       +E+  Q+ Q++   ++++
Sbjct: 758 KAQSSEEKQQENNELRTQLKQLQDDNSLLK 787



 Score = 37.2 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 68/223 (30%), Gaps = 14/223 (6%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              L+  +S+ +     +  +  + E   +     +  +  + +   ++  + +L      
Sbjct: 842  ADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKF 901

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADI----RYDNNELQKLWSFLFSDFVEQKYFL 533
             K        +  L N    LQE  + +  I         E  +    + +   E +   
Sbjct: 902  DKRQHNAR--IQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKK 959

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             E+   +    G  E LK L + V  +   +A       D  +     +    + R    
Sbjct: 960  REDARSQEQFLGLDEELKSLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEEL 1019

Query: 594  QKEEI--EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            Q+ E    + +        AE    L+  L      + + E Q
Sbjct: 1020 QEAERFSREAMQAAKDLSRAEAEIELLQHL------LREREGQ 1056


>gi|119181828|ref|XP_001242096.1| hypothetical protein CIMG_05992 [Coccidioides immitis RS]
          Length = 667

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 34/296 (11%), Positives = 83/296 (28%), Gaps = 20/296 (6%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD- 417
           P   I        +     +L        +  +    +   +       L       K  
Sbjct: 199 PTPQISQDPVEETDDDPTTNLNEPHSQSGKFWKAEYESYRTKSDREIKKLLEYRALTKSF 258

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            + +      + D+L+Q  +K             K A + +   P    M   L +    
Sbjct: 259 ARKKDEQVSRLTDKLRQEEEKLQVMEHHLAEIAAKMADNINTGEPKDEAMVKELSQQTAL 318

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 +AA L   +    +L        D    +  ++KL          +       +
Sbjct: 319 TLKHKHKAASLRRTLERHGVLDSDESSHDDDPKQDAVMRKLRE-----VQAELDLANARL 373

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----ALYKRFRLLSR 593
             +    G   L   ++   + A        +   D+ +  ++          +   L R
Sbjct: 374 KSQGRSDGLKRLQTLVESSEKKARELDNENLSLKQDLAKIKKEISTYEGRRVSKEARLKR 433

Query: 594 QKEEIEKQIAQVTAK---------GEAEKTAILI-SILHEVHIQIHQIESQEAMIE 639
           ++E++E+++ + + +            +       +   E+   I  + S+ A +E
Sbjct: 434 KQEDLERRVKEYSERLRDSSKAHWEAQDALKKTFEAEKREMQDIIDSLRSELAAVE 489


>gi|49118234|gb|AAH73238.1| LOC443632 protein [Xenopus laevis]
          Length = 835

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 62/167 (37%), Gaps = 21/167 (12%)

Query: 491 LINHPAILQEQYQELADIRYDNN---------ELQKLWSFLFSDF-VEQKYFLPEEIHQR 540
           ++     ++E+ + L ++              ELQK+          E K    E I Q 
Sbjct: 568 ILTRRQTIEERKERLENLNIQREKEEHEQREAELQKVRKAEEERLRQEAKEREKERILQE 627

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             +     + ++L++  +      A  + +I ++ +       + K+   L ++K E++ 
Sbjct: 628 HEQIKKKTVRERLEQIKKTEFGAKAFKDIDIENLEE-LDPDFIMAKQVEQLEKEKRELQD 686

Query: 601 QIAQVTAKGEAEKTAILISILHEVHI----------QIHQIESQEAM 637
           ++     K +  + A  +  +  +            ++ +++ +E +
Sbjct: 687 RLKNQEKKIDYFERAKRLEEIPLLKKAYDEQRISDMELWELQEEERI 733



 Score = 37.6 bits (85), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 41/107 (38%), Gaps = 2/107 (1%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    E I  +L       +L +    ++ A +     E + + +    + +   ++R  
Sbjct: 512 QNMPSEHIRNQLT--AMSTVLSKAVATIKPAHVLQEKEEQHQIAISAYQKNSRKEHQRIL 569

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +  EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 570 TRRQTIEERKERLENLNIQREKEEHEQREAELQKVRKAEEERLRQEA 616


>gi|74216698|dbj|BAE37767.1| unnamed protein product [Mus musculus]
          Length = 353

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 112/333 (33%), Gaps = 17/333 (5%)

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
           +     +++  +G             L              LL  G  P           
Sbjct: 23  FSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQRLALLHEGTGPRVISAFVEIIF 82

Query: 371 FEKLIVESLPLVDMLWKRET-ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
                   +   ++  +R     +     D++   +  + N +      +   YY    +
Sbjct: 83  DNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKNDVMNLLESAGFSRSNPYYIVK-Q 141

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            ++ Q+     ++     R       + ++K  S  LM+ +  K +           LL 
Sbjct: 142 GKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMKETEGKREKIN-------ELLK 194

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +      L+E+ +ELA  +  +   + L   +++  + +     +E+  +    G    
Sbjct: 195 YIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDELSAKRETSGEKS- 253

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVR------QGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +QL    +DA       E  + +++      +  ++ L+  ++ ++  R K E++ +  
Sbjct: 254 -RQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQLSAERQEQIKQRTKLELKAKDL 312

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           Q    G +E+   L+    ++  +I + + + A
Sbjct: 313 QDELAGNSEQRKRLLKERQKLLEKIEEKQKELA 345


>gi|293378261|ref|ZP_06624430.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
 gi|292643125|gb|EFF61266.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
          Length = 522

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           ++++  ++     + ++  +L   L +   +    +  +  +R  +    ++L +L  + 
Sbjct: 37  IKKEADKVTASHKEKDQASQLIDELENGEEKISEPVDPKEKERQDQENLEKILDELATEA 96

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFR----------LLSRQKEEIEKQIAQVTA 607
                      A   D +    +      +                Q++ +E +I ++ A
Sbjct: 97  NKTSARLDEVNAQFADNKAARNEKQEALMQLNTKEELGELTEEELAQRQTLEAEIKELEA 156

Query: 608 KGEA--EKTAILISILHEVHI 626
            G+   E+   L + L ++  
Sbjct: 157 TGDTLLEEQLKLEAELKDIRK 177


>gi|291549496|emb|CBL25758.1| ATP-dependent chaperone ClpB [Ruminococcus torques L2-14]
          Length = 861

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 54/155 (34%), Gaps = 5/155 (3%)

Query: 498 LQEQYQELADIRYDNNELQKLW----SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
           L+E+Y+    ++  ++ L         ++   F+  K     +    L +     +  +L
Sbjct: 352 LKERYEVFHGVKITDSALVAAVTLSNRYISDRFLPDKAIDLVDEACALIKTELDSMPTEL 411

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           D   R   +     E+ +        +    + +  L   + +   K++     K   E 
Sbjct: 412 DEL-RRRVMQMEIEESALKKEEDRLSKERLEHLQEELAELKAQYASKKVQWENEKNSVEH 470

Query: 614 TAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
              +   + +V+ +I + + +  + +      GRL
Sbjct: 471 VQKIREQIEQVNKEIQKAQREYDLNKAAELQYGRL 505


>gi|303317174|ref|XP_003068589.1| hypothetical protein CPC735_006160 [Coccidioides posadasii C735
           delta SOWgp]
 gi|240108270|gb|EER26444.1| hypothetical protein CPC735_006160 [Coccidioides posadasii C735
           delta SOWgp]
          Length = 1309

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 101/300 (33%), Gaps = 29/300 (9%)

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
               ED     R  G  A      E++  +      E ++      + ++  +  + N  
Sbjct: 608 NHPPEDKTLAQRIMGLEAELATERENIAKLQREAHEERQSTVDKMEEVQSTKKDLMHNLE 667

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           +  ++ +    + ++  ++L+   ++   E          ++R +++    +++ Q    
Sbjct: 668 SKQREFESERKFLESEANKLKIRLEEMEEELDRA-----MDSRDQEKHEAEEKIEQLQSK 722

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQK 530
             K        E            +  +   + ++    + E ++L   +       E  
Sbjct: 723 LDKALVAVEEAER-----------LRTQIQNQHSESSKFDAEKKELLDRIEKMDKVQEDH 771

Query: 531 YFLPEEIHQRLCERG-----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
             L   +H +L   G     F +L+K +D       + +  ++    D+ +  Q  L   
Sbjct: 772 VGLLRAVHLQLSPSGAPPTDFPQLVKAIDVLSEGLAIHARGSDKKAADLAEENQVLLEKV 831

Query: 586 KRFRL----LSRQKEEIEKQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQEAMIE 639
            +       L+++ E  +    +     + EK     + S L E   ++  +ES+ A  E
Sbjct: 832 SQIESEVERLNQKLESEKLAKKRALELLDHEKLSHQGVQSELKEERKRLRTLESKLAAGE 891


>gi|293331113|ref|NP_001168342.1| hypothetical protein LOC100382110 [Zea mays]
 gi|223947593|gb|ACN27880.1| unknown [Zea mays]
          Length = 626

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 45/388 (11%), Positives = 108/388 (27%), Gaps = 31/388 (7%)

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
            A   +  S      ++  +F+          +   A V    +  G A    QL     
Sbjct: 98  PAWQAIALSNAPKPAQDQEAFVWP-------WTGVLANVPAGQAQEGGATLMEQLAEFKP 150

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF-IRCYGKTAF 371
           +    V   DG    +   +    +   + +             +D             +
Sbjct: 151 VQITAVCGADGYAGYVVVLFTKDWIGFKNALAFQNCFKSRRLGKQDWKETKGHVEQVFGW 210

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-RYYYSQAIRD 430
                +      +              +   E+     N I+ +  Q   +  Y Q +  
Sbjct: 211 LAKEEDYRSDDPVGRFLSANGDLKTVSELEQEMSSKTDNLIDSLARQITAKSKYLQELEC 270

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           +  Q+               K+          + R     + +     +  L E      
Sbjct: 271 KCNQMNLSLQKAMEESDLLHKRYNEEMRNMQSAVREHTRRVFQETEELRNQLVEKE---- 326

Query: 491 LINHPAILQEQYQELADIRYDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                + +Q + +EL ++    + E +KL      +  +        I Q+  +    +L
Sbjct: 327 -----SNIQRRSRELNELVAQTDMERRKLEEERKKNADQNDSLNMARIEQQRADERALQL 381

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           L++  ++  DA       E  + + ++       L  +  ++                  
Sbjct: 382 LEKHKKEKEDALNRILQLERQVDEKQKLELDIEQLKGKLEVVKHM---------AGEGVD 432

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAM 637
             +++  L + L+E   +I ++E  EA+
Sbjct: 433 VKKRSEELTAELNE---RIEEMEDLEAL 457


>gi|195116371|ref|XP_002002729.1| GI11283 [Drosophila mojavensis]
 gi|193913304|gb|EDW12171.1| GI11283 [Drosophila mojavensis]
          Length = 1192

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/248 (10%), Positives = 76/248 (30%), Gaps = 20/248 (8%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            +       D+ ++L+  L+  +   +DQ+ R    +          +    +      +
Sbjct: 288 VQKEHCKAQDQCSKLQRDLRENVAQKEDQEERIATLEK---------RYLNAQRESTSLH 338

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
                  ++ +    +L         + +K  L E  L       P + ++    +  + 
Sbjct: 339 DLNEKLEQELRHKEAQLKLHEEKISAIEEKLELSEQKLAQHAKLQPDMEEQLKARMEALT 398

Query: 510 YDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
                       +      +++K      ++QRL            +  +R +       
Sbjct: 399 KAQERHGSAEDRIRGLEANLDEKNAEVVRLNQRLKMNE--------EHNLRLSSTVDKLL 450

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             +   +    ++ +        L+++ E+  +++A+     ++E    L     E+   
Sbjct: 451 SESNERLEVHLKERMRALDEKNALTQELEKA-RKVAEELHHEKSEIMKELSKTRLEIENF 509

Query: 628 IHQIESQE 635
             Q+  QE
Sbjct: 510 KRQLLQQE 517


>gi|187954537|gb|AAI40825.1| Coiled-coil domain containing 88B [Homo sapiens]
 gi|187954627|gb|AAI40823.1| Coiled-coil domain containing 88B [Homo sapiens]
          Length = 1476

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 23/220 (10%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            +      ++ R  QL ++      G      K    +  +          L++ + S   
Sbjct: 934  KEEALMELKTRALQLEEELFQLRQGPAGLGPK----KRAEPQLVETQNVRLIEVERSNAM 989

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             + E A L   + H         +L  ++      Q+L                E+    
Sbjct: 990  LVAEKAALQGQLQHLE------GQLGSLQ---GRAQELLLQSQRAQEHSSRLQAEKSVLE 1040

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIE 599
            +  +     L+ L+ +VR A         +  + R   Q  L  +K    L R Q+ E+E
Sbjct: 1041 IQGQELHRKLEVLEEEVRAARQ-------SQEETRGQQQALLRDHKALAQLQRRQEAELE 1093

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              + +            L     E+  +  Q+++Q A +E
Sbjct: 1094 GLLVRHRDL--KANMRALELAHRELQGRHEQLQAQRASVE 1131



 Score = 37.2 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 90/268 (33%), Gaps = 13/268 (4%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
             +         +  E+      +E        +     ++   +R    + +  RL+ L 
Sbjct: 836  RAQSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRG---KELGARLEHLQ 892

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            ++          + ++      +    ++ +++ L     SK+ +L E       +    
Sbjct: 893  RELEQAALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEE-E 951

Query: 497  ILQEQYQ--ELADIRYDNNELQKLWSF-LFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            + Q +     L   +    +L +  +  L          + E+   +   +     L  L
Sbjct: 952  LFQLRQGPAGLGPKKRAEPQLVETQNVRLIEVERSNAMLVAEKAALQGQLQHLEGQLGSL 1011

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
              + ++  L S   + +   ++    +   L  + + L R+ E +E+++         E+
Sbjct: 1012 QGRAQELLLQSQRAQEHSSRLQA---EKSVLEIQGQELHRKLEVLEEEVRAARQS--QEE 1066

Query: 614  TAILISILHEVHIQIHQIES-QEAMIEG 640
            T      L   H  + Q++  QEA +EG
Sbjct: 1067 TRGQQQALLRDHKALAQLQRRQEAELEG 1094


>gi|171769754|sp|A2AL36|CE110_MOUSE RecName: Full=Centriolin; AltName: Full=Centrosomal protein 1;
           AltName: Full=Centrosomal protein of 110 kDa;
           Short=Cep110
          Length = 2334

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 59/150 (39%), Gaps = 11/150 (7%)

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           TL+     +Q++ +EL  I  D   ++K  + L S   EQ                  + 
Sbjct: 649 TLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNAS----------LQQA 698

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
              L     +        +A    ++Q  ++ L   +  + + + + E E++  +  A G
Sbjct: 699 QGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLR-DALG 757

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +A+ +       +E+  Q+ Q++   ++++
Sbjct: 758 KAQSSEEKQQENNELRTQLKQLQDDNSLLK 787


>gi|148993856|ref|ZP_01823258.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489074|ref|ZP_02713273.1| chromosome segregation protein SMC [Streptococcus pneumoniae SP195]
 gi|147927681|gb|EDK78706.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572487|gb|EDT93015.1| chromosome segregation protein SMC [Streptococcus pneumoniae SP195]
 gi|301794329|emb|CBW36754.1| putative chromosome partition protein [Streptococcus pneumoniae
           INV104]
 gi|332073585|gb|EGI84064.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA17570]
          Length = 1179

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E   + A +R +   L+ L   + +     +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAADEASLRSEEAALKTLQDQMATLTERLEVIKSQGEQARIQEQGLSLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E  I  + +G  QA       R   ++  K+ +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEEIDRLSEGDWQADKEKCQDRLAAIASDKQNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 833


>gi|145505035|ref|XP_001438484.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405656|emb|CAK71087.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2287

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/309 (9%), Positives = 96/309 (31%), Gaps = 36/309 (11%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            + +      K   +S      L ++ T            +     K   ++++  K +  
Sbjct: 1305 KLHDLREGIKFFQQSKNENQRLLEQYTNMPQQLFLQVYQQKLDKNKELYDNLRKIKEKKS 1364

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            Y    + ++ +L ++         R        R +    Q     + ++    ++  L+
Sbjct: 1365 YLNKNKTKITELNEEIEELSLARYRNRIMIEDLRQELSQPQFQNIENQLEYCNKEELQLK 1424

Query: 484  EAALLLTLINHPAILQE-------QYQELADIRYDNNELQKLWSFLF------------- 523
            E  +     +   + ++       Q +++      +N L  + S +              
Sbjct: 1425 E-QIDALYFSKINLFEQCMEKQVGQEEQVESFNIKDNFLLSIQSEITYYENEIKRLSQEI 1483

Query: 524  -----SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                      Q     +     L E+   ++ + ++ + +   L  ++ + +  ++    
Sbjct: 1484 EIVNQEISESQIIVDRQTKLNYLQEKKLIKVNQHINLETQINQLKKSSIDQS-ENLIALK 1542

Query: 579  QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI-------HQI 631
             Q+L   +    L   +  +  +  +   + +  K    +  L ++   +        ++
Sbjct: 1543 DQSLKEQQELNSLKEYENNLINK--EQEKQEQITKIDKYLKELRDLEQHLKEKQVLDQEM 1600

Query: 632  ESQEAMIEG 640
            +  E +++G
Sbjct: 1601 QKFETLLKG 1609


>gi|94991294|ref|YP_599394.1| M protein [Streptococcus pyogenes MGAS10270]
 gi|94544802|gb|ABF34850.1| M protein [Streptococcus pyogenes MGAS10270]
          Length = 425

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 78/286 (27%), Gaps = 15/286 (5%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              +  +      K   +++  V   +              R      L   +  +  + 
Sbjct: 41  AETVGRFSDEQVRKAREKAIEDVFDGYTGARSVYQSGNLPNRLTPTK-LSKLMQQMYKET 99

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           L+    + +    + L      +      Y K+  + +       +    +L        
Sbjct: 100 LQK--KEELDTLSKALTHTIEKKIESENAYKKELGQLKAAAEAEAQKALDALNNKNKQIS 157

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL------FSDFVEQKYFL 533
               E A L   I     +Q       ++     EL    S L           +Q    
Sbjct: 158 DLTNENAQLKEAIE--GYVQTIQNASREMAAKQQELAAAKSQLEAKNAEIEALKQQDASK 215

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            EE+  +L       L   L    R+     A  +    +  +   Q   L        R
Sbjct: 216 TEEL-AKLQSEA-ATLENLLGSAKRELTELQAKLDTATAEKAKLESQVTTLENLLGSAKR 273

Query: 594 QKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAM 637
           +  +++ ++    A+ E    + A L   L     ++  ++++ A 
Sbjct: 274 ELTDLQAKLDAANAEKEKLQSQAAALEKQLEATKKELADLQAKLAA 319


>gi|42524440|ref|NP_969820.1| ABC transporter ATPase [Bdellovibrio bacteriovorus HD100]
 gi|54035764|sp|Q6MIV0|CLPB_BDEBA RecName: Full=Chaperone protein ClpB
 gi|39576649|emb|CAE80813.1| ATPase with chaperone activity, two ATP-binding domains
           [Bdellovibrio bacteriovorus HD100]
          Length = 855

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 78/217 (35%), Gaps = 14/217 (6%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++KYI + +   R ++           +  +++    K ++     + +AAL+  + ++H
Sbjct: 315 YRKYIEKDAALERRFQTVMVEEPSVEDAITILRGLKEKYEVHHGIRITDAALVSAVKLSH 374

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +    KL     S   E      E +  R+      E LK+  
Sbjct: 375 RYITNRFLPD-KAIDLIDEAASKLGIETRSVPEEVDKIERELMQLRIE----KEALKKEK 429

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKR-----FRLLSRQKEEIEKQIAQVTAKG 609
            +     L     E   ++ +    +    +++      + L    E+++  +A+   +G
Sbjct: 430 DESARERLAVIDKEITELNAKNQLLREQWEFEKGGIEGIKKLKADIEDLKVAVAKAEREG 489

Query: 610 EAEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +  K A L    L E   ++  +E  E   EG    S
Sbjct: 490 DLGKAAELKYGKLPEAEKKLKALE--ERSKEGAKSSS 524


>gi|146295228|ref|YP_001178999.1| chromosome segregation ATPase-like protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145408804|gb|ABP65808.1| Chromosome segregation ATPase-like protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 1021

 Score = 39.5 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 63/222 (28%), Gaps = 20/222 (9%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  Y Q +  +L++  Q    E               +     ++   +S          
Sbjct: 403 RRRYKQMLISQLEEEIQSLTKELEEKKAETNFLKSQLEVLELEKKNFPTSADIDTAFDMI 462

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E  +    I     ++   + +      N +    +               E   + 
Sbjct: 463 DGVEKNISKLQIE----IEALEERIK--ELTNKQNLLKYEISLIATKLSLPTSKEVFAKA 516

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-----------LALYKRFR 589
             +      L  L  +V    L     E     + + Y+Q              + K+  
Sbjct: 517 KQDA---NALSSLLLRVETEALHKQEIEKTQESLNRLYEQIKESVDTLNGDVHRISKKLE 573

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +L  QKEEIEK+++   A+   ++       L  +  +  ++
Sbjct: 574 VLKLQKEEIEKRLSSEDAQRLFDEQRRAFERLENIPAERKRL 615


>gi|297700060|ref|XP_002827079.1| PREDICTED: myosin-2-like [Pongo abelii]
          Length = 1951

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1577 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHIRIVESMQSTLDAEIRSRNDAIRLKKKMEG 1636

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1637 DLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQIHLDDAL-----RSQEDLKEQ--LAM 1689

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1690 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1749

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1750 ISQMQGEMEDILQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1809

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1810 QLRLDEAEQLALKGGKKQIQKLEARVRELEGE 1841


>gi|257886823|ref|ZP_05666476.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257895393|ref|ZP_05675046.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|257822877|gb|EEV49809.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257831958|gb|EEV58379.1| conserved hypothetical protein [Enterococcus faecium Com12]
          Length = 522

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           ++++  ++     + ++  +L   L +   +    +  +  +R  +    ++L +L  + 
Sbjct: 37  IKKEADKVTASHKEKDQASQLIDELENGEEKISEPVDPKEKERQDQENLEKILDELATEA 96

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFR----------LLSRQKEEIEKQIAQVTA 607
                      A   D +    +      +                Q++ +E +I ++ A
Sbjct: 97  NKTSARLDEVNAQFADNKAARNEKQEALMQLNTKEELGELTEEELAQRQTLEAEIKELEA 156

Query: 608 KGEA--EKTAILISILHEVHI 626
            G+   E+   L + L ++  
Sbjct: 157 TGDTLLEEQLKLEAELKDIRK 177


>gi|257286293|gb|ACV53093.1| RH14719p [Drosophila melanogaster]
          Length = 646

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEK 600
            E+   +  ++  +    A   +   +    D  +  Q+ +   +R           +E+
Sbjct: 383 EEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEE 442

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Q+ Q+ A  +  +       L  +  ++ + ++ EA+
Sbjct: 443 QLKQLQAAKDELELRQ--KELQAMLQRLEEAKNMEAV 477



 Score = 37.9 bits (86), Expect = 4.7,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 94/273 (34%), Gaps = 7/273 (2%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K + ++     +           E+          +LE++  N    I+++K    +
Sbjct: 231 DQHKMSKDEWEQSIMTWWQEHRSMLREDAMMEYLKIAQDLEMYGVNYFE-IRNKKGTDLW 289

Query: 425 SQAIRDRLQQLFQKYI-TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                  L    Q    T   G+     +N    ++K   + + + +      + +  + 
Sbjct: 290 LGVDALGLNIYEQDDRLTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRIN 349

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  L L + NH   ++ +  +  D++    + ++  +    +  + +  L         +
Sbjct: 350 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQ 409

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           + + + LKQ+   +  +       +  I  + +  +Q  A       L  +++E++  + 
Sbjct: 410 QEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEEQLKQLQAA---KDELELRQKELQAMLQ 466

Query: 604 QVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
           ++      E      L   +    +++ +I+ +
Sbjct: 467 RLEEAKNMEAVEKLKLEEEIMAKQMEVQRIQDE 499


>gi|212224356|ref|YP_002307592.1| hypothetical protein TON_1207 [Thermococcus onnurineus NA1]
 gi|212009313|gb|ACJ16695.1| hypothetical protein, conserved [Thermococcus onnurineus NA1]
          Length = 358

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/274 (10%), Positives = 84/274 (30%), Gaps = 18/274 (6%)

Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438
                     +          +  +      +  + I + +    YS    + +    ++
Sbjct: 5   KRSKKQGIGWDYIKERHPEVVDELKTLRDWDSVKSAIPESETIRDYSVLALEAVAATIRE 64

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
              +        +   R  ++   S +    SL K     +  L E       ++   +L
Sbjct: 65  LRIDREMLAERIEILNRKFEELSSSHKESTHSLEKRIKELEDQLAELEQRTLFLDSVEML 124

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV- 557
             +  E+      +  +++L + +     E      ++  +   E        +L R + 
Sbjct: 125 VPRLNEI------DERMERLSAEILRRVEEHYSKRMDDFIRTYIEERLKSFEGELKRSIF 178

Query: 558 ---RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK-----G 609
               D        + +  ++     +  ++ K    L R   E E++I ++  K      
Sbjct: 179 GVSVDLSETLLRIQQHYEELVAENVRLRSVVKEREELKRALAEKEREIEELKRKLAVLRE 238

Query: 610 EAEKTAILISILHEVHIQIHQI---ESQEAMIEG 640
            +++   L   L +   ++ ++   + + A + G
Sbjct: 239 MSKRVNTLSKRLSDYEAKLAEMSRIQKELAALTG 272


>gi|194209606|ref|XP_001915055.1| PREDICTED: similar to A kinase (PRKA) anchor protein (yotiao) 9
           isoform 1 [Equus caballus]
          Length = 3907

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/272 (8%), Positives = 86/272 (31%), Gaps = 13/272 (4%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           ++    +M     +        ++   + + +      ++D   +    +     +    
Sbjct: 462 KTRHKGEMENALRSYPNITVNEEQIKLMNMAINELNIKLQDTNSQKEKLKEELGVISGEK 521

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-KLSKKPSLREAALLLTLINHP 495
                +          +     +   +    +S L +  K        +A ++    +  
Sbjct: 522 SALQRQLKDLFEELSFSRDQIQRARQTIAEQESKLNEAYKSLSTVEDLKAEIVSACESRK 581

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL---CERGFGELLKQ 552
            +  +   E+ + +     L++  + +     E +    E +  +L    E    +L + 
Sbjct: 582 ELELKHEAEVTNYKIKLEMLEREKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKED 641

Query: 553 LDRQVRD-----AGLWSATTEANIVDVRQGYQQALALYK--RFRLLSRQKEEIEK--QIA 603
           L+ + R              +  I  ++    Q +   +  +  L+++Q + I +  ++ 
Sbjct: 642 LEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISRLK 701

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +       K+  +   ++E+  +I  +  +E
Sbjct: 702 DLQQSLVNSKSEEMTLQINELQKEIEVLRQEE 733


>gi|149063939|gb|EDM14209.1| rCG23609, isoform CRA_b [Rattus norvegicus]
          Length = 1882

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/273 (9%), Positives = 88/273 (32%), Gaps = 14/273 (5%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
              +    ++     + E       +    ++    +     + +       + +   L +
Sbjct: 1510 FNQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNE 1569

Query: 435  LFQKYITEHSGYGRYWKKNARHRDQKGPSQ-RLMQSSLVKGKLSKKPSLREAA--LLLTL 491
            +  +    +       K     +     +Q +L  +      L +  ++ E    LL   
Sbjct: 1570 MEIQLSQANRIASEAQKHLKNAQAHLKDTQLQLDDAVRANDDLKENIAIVERRNTLLQAE 1629

Query: 492  INHPAILQEQYQE---LADIRY--DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +     + EQ +    LA+      +  +Q L S   S   ++K    +    +L     
Sbjct: 1630 LEELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDAD--LSQLQ-TEV 1686

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
             E +++       A            ++++    +  L +  + + +  ++++ ++ +  
Sbjct: 1687 EEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAE 1746

Query: 607  A---KGEAEKTAILISILHEVHIQIHQIESQEA 636
                KG  ++   L + + E+  ++   + + A
Sbjct: 1747 QIALKGGKKQLQKLEARVRELENELEAEQKRNA 1779


>gi|187477569|ref|YP_785593.1| chromosome partition protein [Bordetella avium 197N]
 gi|115422155|emb|CAJ48679.1| putative chromosome partition protein [Bordetella avium 197N]
          Length = 1198

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 14/136 (10%)

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
              +   + +  +E +   PEE+   L E       K+  R+  +    +      + D+
Sbjct: 163 YAIIGQGMINRLIEAR---PEELRVFLEEAAGVSRYKERRRETENRLSDTRENLTRVEDI 219

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQ----------IAQVTAKGEAEKTAILISILH-E 623
            +     L   +    ++RQ  +++            + +  A+ E E+    I+     
Sbjct: 220 LRELSSQLEKLEAQAEVARQYRDLQADGEKKQFALWFLKESGAREERERKNQEIAQAQNN 279

Query: 624 VHIQIHQIESQEAMIE 639
           +   I Q+ + EA +E
Sbjct: 280 LEAAIAQLRAGEAALE 295


>gi|56204569|emb|CAI22510.1| coiled-coil domain containing 18 [Homo sapiens]
          Length = 1044

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/253 (9%), Positives = 85/253 (33%), Gaps = 4/253 (1%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ +       +E +++E  + +     +++ +       I D+ +   +K         
Sbjct: 613 RQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELE 672

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
           +          +    + ++++ L       K +LR+   L  ++    +  E  ++   
Sbjct: 673 KLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTT 730

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
           I+    EL++    +     E          +    +     +  LD  +R+        
Sbjct: 731 IKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 790

Query: 568 EANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
              +   + +   +     K+   L+ + +  ++Q+ +        +   +  +  E+  
Sbjct: 791 IIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNE-QEISQLKKEIER 849

Query: 627 QIHQIESQEAMIE 639
              +++  E++++
Sbjct: 850 TQQRMKEMESVMK 862


>gi|159893|gb|AAA29420.1| Major body wall myosin [Onchocerca volvulus]
          Length = 1957

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 65/217 (29%), Gaps = 11/217 (5%)

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR--DQKGPSQRLMQSSLVKGKLSKK 479
              Y   +R+  QQ+  +     +   +Y     +      +     +      + +    
Sbjct: 1651 KTYQDQMRELQQQVETEQRNGRNSREQYLNMEKKATLLQSEKEEMSVANGQAERARKQAD 1710

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                EA           +  +        R  + EL  + + L     E K         
Sbjct: 1711 YDANEAHT-----QCNELSAQAESLCGSRRKLDTELLAIQADLDETLNEYKASEERCKAA 1765

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                    E L++               E+ + +++    +A  L  +    ++   ++E
Sbjct: 1766 SSDAARLAEQLRKEQENSLQNDRIRKALESQLKEMQARLDEAEVLALKGG--NKDIAKLE 1823

Query: 600  KQIAQVTAKGEAE--KTAILISILHEVHIQIHQIESQ 634
             +I ++ ++ + E  +       L +   +I +++ Q
Sbjct: 1824 SRIRELESELDGEQRRYQETNKSLTKHERRIRELQFQ 1860



 Score = 37.9 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 71/225 (31%), Gaps = 17/225 (7%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS--K 478
            R  Y     ++   L Q    E S      ++  +  D          + L     S   
Sbjct: 1675 REQYLNM--EKKATLLQSEKEEMSVANGQAERARKQADYDANEAHTQCNELSAQAESLCG 1732

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                 +  LL    +    L E        +  +++  +L   L     ++     + I 
Sbjct: 1733 SRRKLDTELLAIQADLDETLNEYKASEERCKAASSDAARLAEQLRK--EQENSLQNDRIR 1790

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKRFRLLSRQKEE 597
            + L  +   E+  +LD     A        A +   +R+   +     +R++  ++   +
Sbjct: 1791 KALESQ-LKEMQARLDEAEVLALKGGNKDIAKLESRIRELESELDGEQRRYQETNKSLTK 1849

Query: 598  IEKQIAQVTAKGEAEK---------TAILISILHEVHIQIHQIES 633
             E++I ++  + + ++            L + L     QI + E 
Sbjct: 1850 HERRIRELQFQVDEDRKNAERTRDLIEKLQNKLKSQKKQIEEAEE 1894


>gi|330939978|gb|EGH43179.1| chromosome segregation protein SMC [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 1162

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETENRIRRTHQNLARLTDLREELER 203

Query: 601 QIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQ 634
           Q+ ++  + + AEK     +   ++  Q+  +  Q
Sbjct: 204 QLERLHRQAQAAEKYQEYKAEERQLKAQLSALRWQ 238


>gi|327541166|gb|EGF27711.1| membrane protein containing Putative helicase A859L domain
           [Rhodopirellula baltica WH47]
          Length = 509

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 79/206 (38%), Gaps = 14/206 (6%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           D+L    +  I EH           R R     S+  ++ S    +   +    EAA   
Sbjct: 157 DQLVTSEKAAIQEHHAKLLADAAADRERAADAWSEVQVRVSEAMDEAKAEIDSYEAAASA 216

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKL--WSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
               +   L E  + +      NN  ++L  +        ++ Y +  E+++ +      
Sbjct: 217 IATKY---LTEVRKGIKSKLNSNNYHKQLETYEKAVEFCGKKGYPVDPEVYESVKAELKE 273

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           +  + + ++V+ A             +++  +    L +  + ++ +++ IEK +A+  A
Sbjct: 274 DYAEAVRKEVQRAEQARIR-----EQIKEEQKAERELEREMKRIAAERKAIEKALAEALA 328

Query: 608 KGEAEKTAILISILHEVHIQIHQIES 633
           + + E +    + + E+  ++ + ES
Sbjct: 329 QTQDEHS----AEVEELRRRLREAES 350


>gi|312374948|gb|EFR22407.1| hypothetical protein AND_15315 [Anopheles darlingi]
          Length = 2701

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 85/271 (31%), Gaps = 20/271 (7%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
               F++L  E+  L     K           +   ++            +++ + Y   
Sbjct: 703 MNDQFDRLRTENRELSTQNVKLLGGVEYQTDQNRIMKMSNETLKKQISTLEERAKNYEIT 762

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             +     +F     +  G      +            R+++ S  + +  ++   RE  
Sbjct: 763 IAKHETTIVF--LKDQAIGAQSMLSRAEVQLGNLKHELRILKDSESRLQAEREMIHRERQ 820

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG- 545
               ++N   +++   +        +    +L        +++       + +RL E   
Sbjct: 821 QRELILNDVEMIKVSMER-------SESEGRLR---LEKRLDETSRECSALRRRLQEEQD 870

Query: 546 -FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
            F EL  QL RQ   A        A    V    + A    +   +  R+ +++++++  
Sbjct: 871 RFRELTSQLQRQNETAHKRMEEEIAIAETVAAELKNA---KEELEIKQRKIDDLQRKLQA 927

Query: 605 VTAKGEAE-KTAILISILHEVH--IQIHQIE 632
             +  + +         + E+    + ++IE
Sbjct: 928 TLSPSDEDNPVTQANRKVRELEHLAEQNRIE 958


>gi|308070421|ref|YP_003872026.1| ATP-dependent protease La [Paenibacillus polymyxa E681]
 gi|305859700|gb|ADM71488.1| ATP-dependent protease La [Paenibacillus polymyxa E681]
          Length = 778

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 54/172 (31%), Gaps = 3/172 (1%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            L  G +       E A ++   ++    +   +EL +      E   L   + + F   
Sbjct: 82  KLPNGTIRVLVEGLERAEIIQYTDNEEYYEVMAKELHEAENVQPETDALMRTVLTQFEHY 141

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                +   + L      E   +L   +          + +I++      Q L       
Sbjct: 142 INLSKKVTPETLAAVSDIEEPGRLADVITSHLTLKIKEKQDILETID-VTQRLEKLLDIL 200

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQEAMIE 639
              R+  E+E++I Q   K   +      L   +  +  ++ + E +   +E
Sbjct: 201 NNEREVLELERKINQRVKKQMEKTQKEYYLREQMKAIQKELGEKEGRAGEVE 252


>gi|293603949|ref|ZP_06686363.1| SMC structural maintenance of chromosomes partitioning protein
           [Achromobacter piechaudii ATCC 43553]
 gi|292817642|gb|EFF76709.1| SMC structural maintenance of chromosomes partitioning protein
           [Achromobacter piechaudii ATCC 43553]
          Length = 1177

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 62/227 (27%), Gaps = 12/227 (5%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           Q I +  +++  + +          +  A  +                 +      L  +
Sbjct: 664 QEIENLQREIKAQQLIADQARAAVARAEAAWQQVSQAIAPARTRVAEVTRRVHDIQLEHS 723

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            L               Q+L +I+    +L+       + F      L E   +      
Sbjct: 724 RLQQQAEQSGERASRLRQDLEEIKVQEEDLRATREEAEARFETLDEELAEHQSRFADAEM 783

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR--------QKEE 597
            GE L       R                 +G Q  +   +R + L+         + E+
Sbjct: 784 DGETLAAQAEAARTRLRELERAAQEAEFAERGIQVRITDLQRNQQLAADQSQRGTVELEQ 843

Query: 598 IEKQIAQVTAKGEAEKTAILISILHE----VHIQIHQIESQEAMIEG 640
           +  ++ ++ A          +    E    +     ++E+  A++ G
Sbjct: 844 LMGELTELDASASQAGLQDALEARAEREEALSRARQEMENLAALLRG 890


>gi|242266563|gb|ACS91128.1| SLA2 [Microsporum gypseum]
 gi|242266580|gb|ACS91142.1| SLA2 [Microsporum gypseum]
          Length = 1044

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 41/386 (10%), Positives = 117/386 (30%), Gaps = 22/386 (5%)

Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308
           Y  +  +  + +++           +  + G  D             S+L    +   + 
Sbjct: 197 YGIYKFITSMLRAM--HSTTGDEDALEPLRGRYDAQYYRLVRFYYECSNLRYLTSLISVP 254

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368
            L    P ++    G++       + ++       P  +          D  S      +
Sbjct: 255 KLAPQPPNLLA---GEEDKPSLPKRPVNEPEREPTPPPKATIPDAEPINDFWSTEAKRQQ 311

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
             +E          +   +++   +     +   + +          ++Q +   Y Q  
Sbjct: 312 EEYEAEQRRLQSQWEEQQRQQMLAQQQAQREFEEQ-QRLQAEQQRLAQEQLMANQYQQQT 370

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           + RL +L Q+ +   + Y R      ++  +    +  +                     
Sbjct: 371 QGRLAELEQENLNARAQYERDQLMLQQYDKRVKDLEEQLNQINSNFNSQNSSK------- 423

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                   +++   ++L   R     L KL+S L  + ++          +    +   +
Sbjct: 424 ------DDLIRSLQEQLNTWRTKYEALAKLYSQLRQEHLDLLQTTKSLKLKAASAQEAID 477

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
             ++L+R+++   L  A  +      R  +++          L + K E+   I +    
Sbjct: 478 KRERLEREMKTKNLELA--DMIRERDRALHEKDRLTGGNREELEKLKRELRMAIERAENA 535

Query: 609 GEAEKTAILISILHEVHIQIHQIESQ 634
            E  K + + ++L + + ++  +E  
Sbjct: 536 -ERAKGSEISAMLSKYNREMADLEES 560


>gi|226292278|gb|EEH47698.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 640

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 7/118 (5%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           +        I   L E+         D+  +  G+     +  + +  +  +QA      
Sbjct: 87  DDARAQNAAIIDELKEQVKKAETVS-DQYRKQLGVLQLRLDEAVSEQSRLEEQAHEKDVS 145

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH------EVHIQIHQIESQEAMIE 639
              L  + +E+ +QI  +    EAE+T +            ++   I +++   A  E
Sbjct: 146 LNALQAEVKELTRQIRDLQQAHEAERTGMAQEKEQQGKREGDLQSTIQRLKETIAQKE 203


>gi|225851132|ref|YP_002731366.1| putative DNA double-strand break repair protein Rad50
           [Persephonella marina EX-H1]
 gi|225645387|gb|ACO03573.1| putative DNA double-strand break repair protein Rad50
           [Persephonella marina EX-H1]
          Length = 893

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 547 GELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
            E L  +  + ++        E    +  + + ++      +RF+ L  + +EIE++   
Sbjct: 271 QEELDDIKNKEKELSTLRPFVERYEKVERIIELFRNLEKENERFKALKEKIDEIEERKKL 330

Query: 605 VTAKGEAE-KTAILISILHEVHIQIHQIESQEAMIEGF 641
               G+   +       L ++  +I++I   +  ++GF
Sbjct: 331 KERLGKIAHQYEEKEKELKDIQNKINEISRLKGELKGF 368


>gi|195477581|ref|XP_002100249.1| GE16938 [Drosophila yakuba]
 gi|194187773|gb|EDX01357.1| GE16938 [Drosophila yakuba]
          Length = 1223

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 70/571 (12%), Positives = 165/571 (28%), Gaps = 44/571 (7%)

Query: 106 KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
           + ++ ++    L+          H SL +  +K +  ++ E+  D     + +L    D 
Sbjct: 401 EYQRVKEQVRTLLDRNRKLQQELHQSLADLAEKEMRAHIAEQAHDKLRSHVIELKSKLDQ 460

Query: 166 RYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225
           R              +    + L+   ++      +         R          G   
Sbjct: 461 REQAAAGGENPNGDHKLREISLLVDQVNDELQRTQKELETQGHETRQQLNSRSQSEGGDN 520

Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSI-RKDVRRNSSSFIILVEGYMDVL 284
              E  + L+S         K L       N  ++   ++++          +E   +  
Sbjct: 521 GGDEVHEMLHSHSEEF--TNKQLNFAGELRNINRQLDLKQELHERIIRNFSKLEAEDEDA 578

Query: 285 SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344
            L Q   +             QLR +        L  +          +  +L    +  
Sbjct: 579 KLRQCNQKIDDLEAERRDLMDQLRNIKNKDASAKLAEERRKRLQHLEQEISELRRKLITQ 638

Query: 345 GNRVNFVLLSRGE-----DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399
            N +      R +          ++        ++  ES         RE E     + D
Sbjct: 639 ANMLKMREKEREKIQNLSSEIRAMKESKVKLIREMRGESEKFRQWKMVREKELTQLKSKD 698

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIR--DRLQQLFQKYITEHSGYGRYWKKNARHR 457
            + + EI  +  ++  + Q L+    +A+    RL+   ++  +  +   +Y K +    
Sbjct: 699 RKMQSEIVRQQTLHSKQRQVLKRKCEEALAANKRLKDALERQASAQAQRHKYAKDHGGSA 758

Query: 458 DQKGPSQR-LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
             +  +   + +   +   L       E      L+   A++   Y  L   + ++    
Sbjct: 759 KLQAQTDSWVDRELEIILSLIDAEHSLEQ-----LMEDRAVINNHYHLLQQEKTNDPAEA 813

Query: 517 KLWSFLFSDFVEQ---KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT------ 567
           K  + + ++  E+   +     ++ Q++C       ++ L   V+  G   A +      
Sbjct: 814 KAQAGILANLEEELEMRNAQISDLQQKVCPADLDSRIRSLAEGVQSLGESRAVSKQLLKT 873

Query: 568 -------------------EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                              +     +    QQ  A  KR RL+  + EE      +   +
Sbjct: 874 LVQQRRLQAASLNEQRTALDEQRAQLLDAQQQGEAASKRLRLVQSEHEEQMLAQQRAYEE 933

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             A           E+       + +  ++E
Sbjct: 934 KVAVLIRTANQRSAELQTPAEAEQQRNQILE 964


>gi|168048781|ref|XP_001776844.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671848|gb|EDQ58394.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 515

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 74/193 (38%), Gaps = 7/193 (3%)

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
           +  R Q    + L+ + + + +++ +    E +L   L     I +++ +++ D++  + 
Sbjct: 293 SGARKQASELKELISTQITQLQMAVEKMDNEFSLRHVLEEKDKIFEDKKKKIGDLQRASV 352

Query: 514 ELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
                +S L   F E +       ++ + L E    E ++  ++   +    +       
Sbjct: 353 TDALKYSRLEHQFKETQAEWVKENKLAKSLMELTKQECMELRNQYQEEKNRVAELEAGRS 412

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQI-----AQVTAKGEAEKTAILISILHEVHI 626
                  +Q+ +       L R+  E+E ++      Q      +     L   +H +  
Sbjct: 413 KLEDDFRRQSESSKMENEQLKRRIAELEAEMITVTMQQGEVNPASTSLWELEKQVHALEE 472

Query: 627 QIHQIESQEAMIE 639
           Q+ + ++Q A++E
Sbjct: 473 QLKERDTQIALLE 485


>gi|159025864|emb|CAO86191.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
 gi|159025999|emb|CAO86261.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
 gi|159030549|emb|CAO91459.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 279

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 51/141 (36%), Gaps = 9/141 (6%)

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
           +L      + +       +  +           +   L ++      +   R+   A L 
Sbjct: 9   DLYLDHLTHADTVITAEIVEHESQSTDETDWAALSSHLRQQNQELQAEIWRREQALAELR 68

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-----ILI 618
           S   E +    R+       + ++   L  +K+++++ + ++    +AE+        L 
Sbjct: 69  SRLAEQH----RRWQSCDTLIQQQNEELQYEKQQLQRALGEIEQYRQAEQRQPMIIANLT 124

Query: 619 SILHEVHIQIHQIESQEAMIE 639
           + L     Q+ ++E + A+I+
Sbjct: 125 AELTRTRQQLARLERECALIQ 145


>gi|148243460|ref|YP_001228617.1| chaperone ClpB [Synechococcus sp. RCC307]
 gi|147851770|emb|CAK29264.1| Chaperone ClpB [Synechococcus sp. RCC307]
          Length = 884

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 8/129 (6%)

Query: 507 DIRYDNNELQKLWSFLFS--DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
            I   +     L     S    VE        I + L       + +++  Q R +    
Sbjct: 419 AIDLIDEAAADLKMEATSKPAVVEAAEAELRRIERSLLAAEQAPMEERVQHQQRRSDALD 478

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL-HE 623
                    ++  +Q      +  R L +++EE+   IA+     E E  A L   L  +
Sbjct: 479 KL-----EQLQDRWQHERQQLQDLRQLQQREEELRHGIAEAERLTEWEDMARLQVELEQD 533

Query: 624 VHIQIHQIE 632
           V  +  ++E
Sbjct: 534 VQRRRQELE 542


>gi|114626662|ref|XP_001142531.1| PREDICTED: golgin 97 isoform 2 [Pan troglodytes]
 gi|114626664|ref|XP_001142599.1| PREDICTED: golgin 97 isoform 3 [Pan troglodytes]
 gi|114626666|ref|XP_001142668.1| PREDICTED: golgin 97 isoform 4 [Pan troglodytes]
 gi|114626668|ref|XP_001142760.1| PREDICTED: golgin 97 isoform 5 [Pan troglodytes]
 gi|114626670|ref|XP_001142840.1| PREDICTED: golgin subfamily A member 1 isoform 6 [Pan troglodytes]
          Length = 767

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/259 (10%), Positives = 76/259 (29%), Gaps = 31/259 (11%)

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                ++     + D   +    Q I+++L+   +K+  + S   ++ ++N   +  +  
Sbjct: 62  RRNEQIRKLEARLSDYAEQVRNLQKIKEKLEIALEKH--QDSSMRKFQEQNETFQANRAK 119

Query: 463 SQRLMQSSLVKGKLSKKPSL----REAALLLTLINHPA-----ILQEQYQELADIRYDNN 513
               +  +L +        +    +E  +L   +         + Q + +      +   
Sbjct: 120 MAEGLALALARKDQEWSEKMDQLEKEKNILTAQLQEMKNQSMNLFQRRDEMDELEGFQQQ 179

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN--- 570
           EL K+   L            E        R      ++L    + +   S   E     
Sbjct: 180 ELSKIKHMLLKKEESLGKMEQEL---EARTRELSRTQEELMNSNQMSSDLSQKLEELQRH 236

Query: 571 ----IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ---------VTAKGEAEKTAIL 617
                               +   L ++++E++  I Q            + + +    L
Sbjct: 237 YSTLEEQRDHMIASKTGAESKITALEQKEQELQALIQQLSIDLQKVTAETQEKEDVITHL 296

Query: 618 ISILHEVHIQIHQ-IESQE 635
              +  +  ++ Q +  +E
Sbjct: 297 QEKVASLEKRLEQNLSGEE 315


>gi|75055812|sp|Q9BE41|MYH2_BOVIN RecName: Full=Myosin-2; AltName: Full=Myosin heavy chain 2; AltName:
            Full=Myosin heavy chain 2a; Short=MyHC-2a; AltName:
            Full=Myosin heavy chain, skeletal muscle, adult 2
 gi|13560269|dbj|BAB40920.1| myosin heavy chain 2a [Bos taurus]
          Length = 1940

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1566 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQTMLDAEIRSRNDAIRLKKKMEG 1625

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       K     +     +Q  +  +L       +  L+E   L  
Sbjct: 1626 DLNEMEIQLNHANRMAAEALKNYRNTQAILKDTQIHLDDAL-----RGQEDLKEQ--LAM 1678

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1679 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1738

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1739 ITQIQGEMEDILQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1798

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1799 QNRLDEAEQLALKGGKKQIQKLEARVRELEGE 1830


>gi|116179588|ref|XP_001219643.1| hypothetical protein CHGG_00422 [Chaetomium globosum CBS 148.51]
 gi|88184719|gb|EAQ92187.1| hypothetical protein CHGG_00422 [Chaetomium globosum CBS 148.51]
          Length = 1454

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 92/278 (33%), Gaps = 12/278 (4%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
             +    +   ++L  +     + L K +          +  +     ++ I  ++    
Sbjct: 325 DDVITQHEDEIDELREKVDDAEEQLKKTQRRMVELEEKAQDGDRLREARDTIEDLEANVR 384

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R  + Q + D  ++L +    +        +      ++   ++ L +    K    +  
Sbjct: 385 R--FEQQVEDMREKLQEATSEKDRAEADLEELQEEMANKSVVTKGLSRQVEEKIARLQSE 442

Query: 481 SLREAALLLTLINHPAILQEQYQ----ELADIRYDNNELQKLWSFLFSDFVEQKYF---L 533
           + R      +L    +  Q++      +L + R + +  +++   L +   E+       
Sbjct: 443 ADRARQDCASLEEERSAQQKEIDGMRAKLKEAREERDSSERIRLSLEARVDEEHGSWRKE 502

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA--LYKRFRLL 591
            E+   +L E        +  R   ++ L  A  + N+ +  +   Q     L      L
Sbjct: 503 LEDARHQLKEARLERDSAEHIRLTLESKLAQAQADLNMRNDEKALLQTRHDALTSESTSL 562

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            R+  ++++ IA+     E E+   L     ++  Q  
Sbjct: 563 QREVTKLKQSIAEAEDSLEQERQHALGIE-QDIRNQFR 599



 Score = 37.9 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 62/220 (28%), Gaps = 1/220 (0%)

Query: 409  KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
            K  ++ ++    +    + ++ ++  L +K              +     QK     L  
Sbjct: 994  KKELDQLEHAASQKESIKGLKRQIADLERKAHEAALDRFATSPSSHGGSAQKAEVSELRH 1053

Query: 469  SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                  +           +          LQ+   EL D ++   +  +       +   
Sbjct: 1054 QLSTANQSVHDLKRSLRDVERKASASARELQKHLDELEDEKFVLEQAFEDAQTAAEESAV 1113

Query: 529  QKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
                  ++   +L   +   + L    R  R+  + S+ +E  + + R  ++        
Sbjct: 1114 AHEETLKKYKAKLERYKRERDELATAVRDQRNNSMNSSLSEMPLEERRDLHKMLRESQLS 1173

Query: 588  FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
               L R+  E           G+      L    +++  +
Sbjct: 1174 ADKLDRELREHRGGARGARGSGDIPPAEKLHKDFNKLKKE 1213


>gi|327270832|ref|XP_003220192.1| PREDICTED: protein Hook homolog 1-like [Anolis carolinensis]
          Length = 724

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 44/366 (12%), Positives = 121/366 (33%), Gaps = 25/366 (6%)

Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357
           L  A  + +   L   +  +    D  D  L     A+     H+            R E
Sbjct: 202 LQVAALQEEKSSLMSENEIMNDRLDQLDGSLDDTNTAVAKKYFHVQLQLEQLQEENFRLE 261

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
                 R + +   ++LI       ++    E      +  D    +        + ++ 
Sbjct: 262 AAKDDYRVHCEELEKQLIELQHRNDELTSLAEESRALKDEIDVLRTVADKANKLESTVEV 321

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            + +       R +++ L +  +          ++  +    +   +   +         
Sbjct: 322 YRKKLEDLNDFRRQVKSLQETNMMYMHNTVSLEEELKKANAARAQLETYKRQVQDLHNKL 381

Query: 478 KKPSLREAALLLTLIN----HPAILQEQYQEL---ADIRYDNNELQ--KLWSFLFSDFVE 528
            + S R   L   +      H A+++E+ + +     ++  N EL+  ++     +    
Sbjct: 382 SEESKRADILAFEIKRLEEKHEALIKEKERLIVQRDALKETNEELRCSQMQQDHLNQTDV 441

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALALY-- 585
                 E +   +    + E+  +L  + +   L    +E   IV++++  +Q       
Sbjct: 442 SAVRSHENLAAEIVPVEYREMFIRLQHENKMLHLQQEGSENERIVELQEQLEQKHRSINE 501

Query: 586 ---------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH----QIE 632
                    +R   L +Q E+++K + +  ++ E E ++ L   +     ++     +++
Sbjct: 502 LETENRLSKERVGELQQQIEDLQKTLQEQASRTEGEGSSKLKEKIAAHMEKLSEVHDELQ 561

Query: 633 SQEAMI 638
            +EA++
Sbjct: 562 KKEALL 567


>gi|322827612|gb|EFZ31719.1| hypothetical protein TCSYLVIO_1966 [Trypanosoma cruzi]
          Length = 577

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 74/231 (32%), Gaps = 13/231 (5%)

Query: 412 INHIKDQKL----RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
           +  + D       R + S+    RLQ   Q+ +       +  +   ++ D   P  +  
Sbjct: 1   MATLPDDVESLHKRIHLSEEWNMRLQSQIQELLRLSQNEVKTMRDRMQNPDIAIPLLQCY 60

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
            +++++ +   +   RE   L  ++   A   E  +    +R    +L++L      +  
Sbjct: 61  DATILEKQEENEKLQREVDKLKLMLQ--AANDELEETREAVRMAEAQLKELRMQAQEEHN 118

Query: 528 EQKYFLPE-EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             +    E E    L  +     L       R+             DV    +  + L +
Sbjct: 119 SLENAKHEVEREAALVRQQLARSLDAEAALKREVDQLKRELNMAQGDVAHFQRDTVTLGE 178

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTA------ILISILHEVHIQIHQI 631
             +    + + IE +  +    GE ++             L E+    H++
Sbjct: 179 EAKQTQSRLKTIESEKEETQQLGELQRIQLQLLSRENEDKLQELERIRHRM 229


>gi|291231503|ref|XP_002735704.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 3906

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/383 (9%), Positives = 104/383 (27%), Gaps = 72/383 (18%)

Query: 328  LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE-----SLPLV 382
              A+ +    +   +    +   V     +D D       +    +++ E     +    
Sbjct: 2989 NNASKQVEKQMQKQVELEVQQKEVENKAQKDLDDEESQETEKINREIVDEKNRIIAKKDA 3048

Query: 383  DMLWKRETENRSFNTPDERAELEI---HLKNCINHIKDQKLR--YYYSQAIRDRLQQLFQ 437
                +   + +  +  + +  LE     ++     +  +K R      +   +R +++ +
Sbjct: 3049 AFEKEMLLKRKQLSDDEYQKLLEKHRQEMERLAAAMDQEKERQKKSLQERFAERKKKMAE 3108

Query: 438  KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS-----------LREAA 486
                +H               +K   + +            +             LR+  
Sbjct: 3109 HLRKKHQAEMEKELGQQHMEREKKIEKEMRGKERPAIDSELQGEDVSAENVIYRVLRQRH 3168

Query: 487  LLLTLINHPAILQEQYQELAD---------IRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            +  T+  +  +  E+   +AD             +  L+     L            EE+
Sbjct: 3169 IKETVNQNEKMKHERNAAIADARNKMEEARQSERDELLEAQRQELMDLIANAGDMTEEEL 3228

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR---- 593
              +  +    +   QL    +  G      E +++      Q    L  + + L      
Sbjct: 3229 ADK-KDDLLRQHKTQLMEFDKVTGQRVEQAEKDVLPGLDVKQAHEKLALKEKQLQELADA 3287

Query: 594  --------------------------------QKEEIEKQIAQVTAKG---EAEKTAILI 618
                                            + + +++Q+ Q+ A+    + E+   + 
Sbjct: 3288 MRDISHGEEDMVRRYSEEAAKAAEDAKKFRETKMKTLKEQMDQIKAEKKKQDDERRRKMQ 3347

Query: 619  SILHEVHIQIH--QIESQEAMIE 639
              L  +  +    ++  ++ + E
Sbjct: 3348 EQLKNIEDEFEKQRLRDEQRIKE 3370


>gi|297545418|ref|YP_003677720.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843193|gb|ADH61709.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 792

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/205 (11%), Positives = 68/205 (33%), Gaps = 27/205 (13%)

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
             +K P ++  +S + + K S     R+   L  +  +  +L   +     + + N   Q
Sbjct: 3   NGEKFPIEKKNKSFIEESKESIAYLQRKEEFLSRIFENEQMLIVVWTLDGRVVWFNKYAQ 62

Query: 517 KLWSFLFSDFVEQKYFL-------PEEIHQRLCERGFGELLKQLDRQVR----------- 558
            +      +  E+              I+++L       +  + +  +            
Sbjct: 63  AVIGIAVEEQTERIDASLIIPREMISHINEKLDNTEDRSIHYKCENPIVLKDGKEIYIMW 122

Query: 559 --------DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                   +   +  +T  +I D++   ++     +    L+ +    +++++ +  K  
Sbjct: 123 HNSIICDDEGNQYIVSTGIDITDLKNAERRLEETNRNLLALNEKLMAQQEELSAMNEKL- 181

Query: 611 AEKTAILISILHEVHIQIHQIESQE 635
             +   L   L E+  Q  +++  E
Sbjct: 182 IAREEKLRQNLIEIQRQQEELKRSE 206


>gi|220682629|gb|ACL80227.1| DNA recombination/repair protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 416

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 85/247 (34%), Gaps = 33/247 (13%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             +     D+L+Q +Q+    +    R   +  ++  +      L+   + +   +    
Sbjct: 106 DSFGDEAFDQLKQSYQQIFDRYKALRRQALEKQKNEKEHQARLDLLAFQIGEIDAADLVR 165

Query: 482 LREAALL----LTLINHPAILQEQYQE---LADIRYDN--------------NELQKLWS 520
             E  LL      L+NH  I          L +  + +               +L   + 
Sbjct: 166 G-EDDLLNQERQRLLNHKKIADTLTSAYLSLDNEDFSSLSQIRSSMNELLSIEDLAPEYQ 224

Query: 521 FLFSDFVEQKYFLPE---EIHQRLCERGFGE-LLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            + +   E  Y L E   ++   + +  F    L+ ++ ++      +      + DV  
Sbjct: 225 LISAGVSEAYYILEEVTKQLSDTIDQLDFDAGRLQDIELRLDSINSLTRKYGGGVNDVLD 284

Query: 577 GYQQALALYKRF-------RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            Y      Y+           L R+ + +EKQ+    ++   ++ A+ + +  ++  ++ 
Sbjct: 285 YYANITKEYQLLSGGDRSSDELERELKALEKQLVLTASQLSDQRHALALELEADIKAELR 344

Query: 630 QIESQEA 636
           ++  ++A
Sbjct: 345 ELYMEKA 351


>gi|194209608|ref|XP_001915061.1| PREDICTED: similar to A kinase (PRKA) anchor protein (yotiao) 9
           isoform 2 [Equus caballus]
          Length = 3899

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/272 (8%), Positives = 86/272 (31%), Gaps = 13/272 (4%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           ++    +M     +        ++   + + +      ++D   +    +     +    
Sbjct: 462 KTRHKGEMENALRSYPNITVNEEQIKLMNMAINELNIKLQDTNSQKEKLKEELGVISGEK 521

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-KLSKKPSLREAALLLTLINHP 495
                +          +     +   +    +S L +  K        +A ++    +  
Sbjct: 522 SALQRQLKDLFEELSFSRDQIQRARQTIAEQESKLNEAYKSLSTVEDLKAEIVSACESRK 581

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL---CERGFGELLKQ 552
            +  +   E+ + +     L++  + +     E +    E +  +L    E    +L + 
Sbjct: 582 ELELKHEAEVTNYKIKLEMLEREKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKED 641

Query: 553 LDRQVRD-----AGLWSATTEANIVDVRQGYQQALALYK--RFRLLSRQKEEIEK--QIA 603
           L+ + R              +  I  ++    Q +   +  +  L+++Q + I +  ++ 
Sbjct: 642 LEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISRLK 701

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +       K+  +   ++E+  +I  +  +E
Sbjct: 702 DLQQSLVNSKSEEMTLQINELQKEIEVLRQEE 733


>gi|254829875|ref|ZP_05234530.1| DNA repair and genetic recombination [Listeria monocytogenes
           10403S]
          Length = 563

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 74/220 (33%), Gaps = 18/220 (8%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + +  RL  + +    E         +  R  +QK       + +               
Sbjct: 185 RELAQRLD-MLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQGEPG 243

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            L          + E  +++      + + + +   + S +   +     +I Q L +  
Sbjct: 244 GL--------EFVGEAMRQMETAASIHTDYKAVSEAISSSYYMLED-SMSQIRQSLDQLE 294

Query: 546 FG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-------LLSRQKEE 597
           F  E L Q++ ++ D           I D+ Q  Q+  +  ++          L  +   
Sbjct: 295 FQPEELNQIESRLNDLNQLKRKYGKTIEDIIQYEQEISSEMEKLTDSESHVGHLETKLAT 354

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           ++ ++ +  A     +    +++  ++  +++Q+  ++A+
Sbjct: 355 LKTELTKQAATLTDIRKKAAVTLEKQIKQELNQLYMEKAI 394


>gi|153807865|ref|ZP_01960533.1| hypothetical protein BACCAC_02150 [Bacteroides caccae ATCC 43185]
 gi|149129474|gb|EDM20688.1| hypothetical protein BACCAC_02150 [Bacteroides caccae ATCC 43185]
          Length = 318

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 21 IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79
          I  Y+             + W   P  +E   SF  N  +  +Y F+    G  +   S 
Sbjct: 11 IADYLHSLGYSPVKQQDINLWYKSPLREEAEASFKVNTERNQWYDFALGKGGGIIELASH 70

Query: 80 ---LLGCSFIESVQRLAAI 95
                  +I  ++R+A  
Sbjct: 71 LYATDHIPYI--LERIAEQ 87


>gi|123396706|ref|XP_001300956.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121882071|gb|EAX88026.1| hypothetical protein TVAG_018980 [Trichomonas vaginalis G3]
          Length = 495

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 78/218 (35%), Gaps = 15/218 (6%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-EAALL 488
           +RL+   Q  +   SG  R  K + + +  + P  ++ +   V  +L+     + +   +
Sbjct: 268 ERLR--TQVRLINPSGIVRQDKSDKKTKSPRKPKLQIAKPIGVDIQLTNSEDSKPQIPQI 325

Query: 489 LTLINHPAILQEQYQELADIRYDNNEL--------QKLWSFLFSDFVEQKYFLPEEIHQR 540
             +     +++    ++        EL          L   + SD         E   + 
Sbjct: 326 QNIKQDNDLVESLLAKIDQKESVIAELTSALAFVGDNLNRSMLSDKNNNILSDIEAKMRD 385

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +    +   +++L +Q+   G  S   E   +             K    L R+ E++++
Sbjct: 386 MQNH-YELEIEKLTKQLNQNGFSSVDPEVAKLMANTSNLDNTYSGKDKNSL-REIEDLKR 443

Query: 601 QIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQEA 636
           ++ +   K   + +  +   SIL ++  +   ++ + A
Sbjct: 444 KLNEANEKLRAKQDTDSKYQSILEQLRREHQAMKKEIA 481


>gi|73994501|ref|XP_859601.1| PREDICTED: similar to Restin (Cytoplasmic linker protein-170
           alpha-2) (CLIP-170) (Reed-Sternberg intermediate
           filament associated protein) isoform 11 [Canis
           familiaris]
          Length = 1429

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 43/393 (10%), Positives = 115/393 (29%), Gaps = 32/393 (8%)

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
            AL    + + K+     S      +   DV++L ++ ++  ++S   A+ E ++     
Sbjct: 578 KALQAATEKLSKENESLKSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKG 637

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR-----GEDPDSFIRCYG 367
           +        +      +        +       +              G+          
Sbjct: 638 VGMETTEFVELKTQIEKMRLDYQHEIENLQNKQDSERSAHTKEIEALRGK---LMAVVKE 694

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
           K +  + I   L   +     E E+      +   +++          +  K+   ++  
Sbjct: 695 KESSLEAIKAKLDKAEDQHLVEMEDTLSKLQEAETKVKELEVLQAKCNEQTKVIDNFTSQ 754

Query: 428 IR---DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR- 483
           ++   ++L  L         G     K   +    +   + L      +   +   +   
Sbjct: 755 LKATEEKLLDLDALRKASSEGKSEIKKLRQQLEAAEKQIKNLEIEKNTESGKASSITREL 814

Query: 484 --EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             +  +L  L  + + + +  + L        ELQ L         E             
Sbjct: 815 QGKDLILNNLQKNLSEVSQVKEALE------KELQILKEKFADASEEAVSV--------- 859

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +R   E + +L ++       S   E    ++     +     +R   L + KE++E  
Sbjct: 860 -QRSMQETVNKLHQKEEQFNALSTELEKLRENLTDMEAKFRERDEREEHLIKAKEKLEND 918

Query: 602 IAQV--TAKGEAEKTAILISILHEVHIQIHQIE 632
           IA++   +   + +   +   L      + +++
Sbjct: 919 IAEIMKMSGDNSSQLTKMNDELRLKERNVEELQ 951


>gi|71834208|gb|AAZ41776.1| RE14758p [Drosophila melanogaster]
          Length = 1200

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 79/229 (34%), Gaps = 15/229 (6%)

Query: 413 NHIKDQKLRYYYSQAIRD---RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
           + ++ QK R  Y+  I +   +L +L  +  +  +       +  +   ++G S+ + + 
Sbjct: 675 SRLEMQKKRTEYTSQIAEFEKKLSKLRNELKSTENNINSIVSEMQKTETKQGKSKDVFEK 734

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              + +L K+  +R            ++ Q +    +     ++   +L   L S    Q
Sbjct: 735 VQGEIRLMKEELVRIEQ--YRAPKERSLAQCKASLESMTSTKSSLEAELKQELMSTLSSQ 792

Query: 530 KYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----- 582
                ++++  +    +   E   Q  +              N+   R    QAL     
Sbjct: 793 DQREIDQLNDDIRRLNQENKEAFTQRMQFEVRKNKLDNLLINNLFRRRDELIQALQEISV 852

Query: 583 -ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               ++      +    EK+I +V +  + E+    +    ++  ++ Q
Sbjct: 853 EDRKRKLNNCKTELVSAEKRIKKVNS--DLEEIEKRVMEAVQLQKELQQ 899


>gi|332559194|ref|ZP_08413516.1| hypothetical protein RSWS8N_09065 [Rhodobacter sphaeroides WS8N]
 gi|332276906|gb|EGJ22221.1| hypothetical protein RSWS8N_09065 [Rhodobacter sphaeroides WS8N]
          Length = 834

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 69/228 (30%), Gaps = 21/228 (9%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            + L+ +               +        +    R  Q         +     E A L
Sbjct: 402 AEPLKVVLPGRRFFDPLAAALIEMRRDLLWNRTNGPRTAQILHAVTHAPEGLFRNERAFL 461

Query: 489 LTLINHPAI-----------LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            T +    +             E  ++L +I     E   L S L +    Q        
Sbjct: 462 RTRVLMRKLDAEAATLAPAARDEIAEQLWEIALMVEE-GDLASALEALRRAQDRLDEA-- 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +      + ++QL +++R A       E      R   QQ     +   +   Q +E
Sbjct: 519 ---IRNGASQDEIEQLMQEMRQALDNYMR-ELAEEAQRNPDQQQSENRQTMEMSGDQLQE 574

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +  ++ ++  +G   + A L+ ++ ++   +  ++      +G G  S
Sbjct: 575 MLDKLQELMEQGRMAEAAELMEMMRQL---MENMQVTMGEGQGQGPGS 619


>gi|332158304|ref|YP_004423583.1| hypothetical protein PNA2_0663 [Pyrococcus sp. NA2]
 gi|331033767|gb|AEC51579.1| hypothetical protein PNA2_0663 [Pyrococcus sp. NA2]
          Length = 300

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 88/273 (32%), Gaps = 21/273 (7%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER--AELEIHLKNCINHI 415
           DP+   R   +    +    ++ L     ++E         ++                 
Sbjct: 6   DPEEIKRIKRELEELQNEKRNIELKLEELQKELNMWIQKRDEKNLEVRRLREKAREFKAK 65

Query: 416 KDQKLRYY-----YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
           +D+  +           I  +L  L+Q+ +   +    + +       ++   +R+ +  
Sbjct: 66  RDEINQKIKDLKKNRDEINAKLDLLYQEALEYRTKRDEFKQLRRLKMPKEKIEERIEKLE 125

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
                       RE  ++  +     +L  + + +  I   NN+LQ++   +      ++
Sbjct: 126 WELQTTPNISPEREKQIVDQI----QVLATELEIIQQIERYNNKLQEVRKKIDQLKKARR 181

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               E            +L  Q  +            +    +  + +Q+ + L ++ R 
Sbjct: 182 AISLE----------IQQLANQSQQYHEQMIKTYQRADEVKKEADEYHQKVVELREKIRE 231

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
           + R+  EIE++I +   K +      L++ +  
Sbjct: 232 VRRELREIERKIMEYDQKHKELIAYKLVARMKA 264


>gi|327306415|ref|XP_003237899.1| nuclear condensin complex subunit Smc4 [Trichophyton rubrum CBS
            118892]
 gi|326460897|gb|EGD86350.1| nuclear condensin complex subunit Smc4 [Trichophyton rubrum CBS
            118892]
          Length = 1431

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 83/236 (35%), Gaps = 28/236 (11%)

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            + +   L+          +   +   +    +     +QR ++    + K S     RE 
Sbjct: 938  RELETELKTTKDAIPKVETTIQKLQLEIDSAKRNLADTQRRVKELSEEHKPSAADEKREG 997

Query: 486  ALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFV---EQKYFLPEEIHQR- 540
            +L  T+      L+++ ++L +++     E+Q L   +          +    + + ++ 
Sbjct: 998  SLEKTI----KALEKEIEKLRSEMTGVEEEIQALQDKIMEVGGVRLRGQKAKVDGLKEQI 1053

Query: 541  --LCERGFGELLKQLDRQVRDAGLWSATTEAN------IVDVRQGYQQALALYKRFRLLS 592
              L +      + +   +        A  +A         D+ +  ++A    K    + 
Sbjct: 1054 SLLTDEVSNAEVSKSKNEKLRVKHEKARADAEAELESVQEDIEKLNEEAKNQAKAVSGIK 1113

Query: 593  RQKEEIEKQIA---------QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++ EE E+ +          +    G+  +     ++  E+  ++   ESQ+A++E
Sbjct: 1114 QKTEEAEEALQTKQEELTALKTELDGKTAELNETRAVEIEMRNKLE--ESQKALVE 1167


>gi|319649603|ref|ZP_08003759.1| smc protein [Bacillus sp. 2_A_57_CT2]
 gi|317398765|gb|EFV79447.1| smc protein [Bacillus sp. 2_A_57_CT2]
          Length = 1188

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 79/235 (33%), Gaps = 19/235 (8%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                +  +  + +F++         R  K   +  + +    R+    L + +   +P 
Sbjct: 147 EEILNSKAEERRTIFEEAAGVLKYKTRKKKAEGKLSETQDNLNRV-NDILHELESQVEPL 205

Query: 482 LREAALLLTLINHPAILQEQYQELA--DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             +A++    +     L++    L   +I   +++ ++L   L     ++        ++
Sbjct: 206 KIQASIAKDYLQQKEELEKIEVALTVYEIEDLHSKWEQLSRQLERHTEDEMKLSAVIQNK 265

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-----FRLLSRQ 594
                   + +  +D  V D           +  + +G ++ L   K+        L R 
Sbjct: 266 EAKMEELKDHIAAIDESVNDLQDVLLHASEELEKL-EGRKEVLKERKKNASQNKDQLHRN 324

Query: 595 KEEIEKQIAQVTAKGE---------AEKTAILISILHEVHIQIHQ-IESQEAMIE 639
            EE+  +I ++  + E          E+   L   L E   Q+    E+ E  IE
Sbjct: 325 MEELSSKITELKEQEEKQSALKGKIKEEAVKLQKALKEKQEQLKLFSENTEEKIE 379


>gi|302495781|ref|XP_003009904.1| hypothetical protein ARB_03830 [Arthroderma benhamiae CBS 112371]
 gi|291173426|gb|EFE29259.1| hypothetical protein ARB_03830 [Arthroderma benhamiae CBS 112371]
          Length = 1112

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 70/248 (28%), Gaps = 33/248 (13%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              ++ +L+ + +K   +                 +   Q+L +    + +       + 
Sbjct: 58  LDDLKTKLKIMEKKRAEDREKLKMVETYRTERDKFETIIQKLREKYQPQQQEITTLRKQL 117

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                 +     +  E    L     D    +++   + +++   K    E   +    +
Sbjct: 118 KEAEYRVEEVERLQSEHESILEMAALDREMAEEVAESIKAEYEALKIRTEELELEVEVLK 177

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY--------QQALALYKRFRLLSRQKE 596
              + L Q+      +       E     +R+          QQ   L  + + L  + +
Sbjct: 178 EENDQLGQVMSPEEKSSQGWLQMERTNERLREALIRLRDMTQQQEADLKDQIKDLEEELK 237

Query: 597 E------------------------IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ-I 631
           +                        +++Q+  + A+   E+         E   ++   I
Sbjct: 238 DYNNLKAQYESTKEKLLASEANMEDLKQQVEALGAEEMIEELTEKNMQYQEEVNELKAII 297

Query: 632 ESQEAMIE 639
           E  E++ E
Sbjct: 298 EDLESLKE 305



 Score = 37.2 bits (84), Expect = 10.0,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 70/226 (30%), Gaps = 22/226 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +    RL+ + Q+   +     +  ++  +  +         +  L+  + + +   ++
Sbjct: 207 LREALIRLRDMTQQQEADLKDQIKDLEEELKDYNNLKAQYESTKEKLLASEANMEDLKQQ 266

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-E 543
              L          +E  +EL +      E       +  D    K    E     +  E
Sbjct: 267 VEALG--------AEEMIEELTEKNMQYQEEVNELKAIIEDLESLKELNDELEINHIESE 318

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E +   +    +     +  +A I D+     +   L    +          +QI 
Sbjct: 319 KQLQEEIDFREGIYHEQNRKISQQDAVIEDLEYTLSKFRELVSTLQNDLEDMR-ASQQIT 377

Query: 604 QVTAKGEAEKTAILISILHEVHI------------QIHQIESQEAM 637
           +  A     ++  ++ +  ++              ++ ++E++E+ 
Sbjct: 378 ETEATDLTVRSRAMMDLNMKLQASAAKAQVKSMDLELGRMEAEESA 423


>gi|289579240|ref|YP_003477867.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter italicus Ab9]
 gi|289528953|gb|ADD03305.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter italicus Ab9]
          Length = 792

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/205 (11%), Positives = 68/205 (33%), Gaps = 27/205 (13%)

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516
             +K P ++  +S + + K S     R+   L  +  +  +L   +     + + N   Q
Sbjct: 3   NGEKLPIEKKNKSFIEESKESIAYLQRKEEFLSRIFENEQMLIVVWTLDGRVVWFNKYAQ 62

Query: 517 KLWSFLFSDFVEQKYFL-------PEEIHQRLCERGFGELLKQLDRQVR----------- 558
            +      +  E+              I+++L       +  + +  +            
Sbjct: 63  AVIGIAVEEQTERIDASLIIPREMISHINEKLDNTEDRSIHYKCENPIVLKDGKEIYIMW 122

Query: 559 --------DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
                   +   +  +T  +I D++   ++     +    L+ +    +++++ +  K  
Sbjct: 123 HNSIICDDEGNQYIVSTGIDITDLKNAERRLEETNRNLLALNEKLMAQQEELSAMNEKL- 181

Query: 611 AEKTAILISILHEVHIQIHQIESQE 635
             +   L   L E+  Q  +++  E
Sbjct: 182 IAREEKLRQNLIEIQRQQEELKRSE 206


>gi|149724317|ref|XP_001504901.1| PREDICTED: myosin, heavy chain 8, skeletal muscle, perinatal [Equus
            caballus]
          Length = 1937

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1564 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHIRVVETMQSTLDAEIRSRNDALRVKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1624 DLNEM-EIQLNHANRLAAETLRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAM 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1677 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V +    S   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1737 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828


>gi|123123548|emb|CAM16866.1| centrosomal protein 110 [Mus musculus]
 gi|123232828|emb|CAM17903.1| centrosomal protein 110 [Mus musculus]
          Length = 2316

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 59/150 (39%), Gaps = 11/150 (7%)

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           TL+     +Q++ +EL  I  D   ++K  + L S   EQ                  + 
Sbjct: 649 TLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNAS----------LQQA 698

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
              L     +        +A    ++Q  ++ L   +  + + + + E E++  +  A G
Sbjct: 699 QGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLR-DALG 757

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +A+ +       +E+  Q+ Q++   ++++
Sbjct: 758 KAQSSEEKQQENNELRTQLKQLQDDNSLLK 787


>gi|114618446|ref|XP_001175228.1| PREDICTED: huntingtin-interacting protein 1, partial [Pan
           troglodytes]
          Length = 535

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/214 (9%), Positives = 74/214 (34%), Gaps = 3/214 (1%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             ++   +F    +             +        +   + S +K +L    +  +  +
Sbjct: 113 FDNKFDDIFGSSFSSDPFNFNSQNGVNKDEKDHLIERLYREISGLKAQLENMKTESQRVV 172

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-HQRLCERGF 546
           L    +   +  E  ++    +   ++ + L + L     +++     +     +  +  
Sbjct: 173 LQLKGHVSELEAELAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQ 232

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
               +    + + + L     +    +     +Q     +    L R+K+E+E  + +++
Sbjct: 233 ANEQRYSKLKEKYSELVQNHADLLRKNAEVT-KQVSMARQAQVDLEREKKELEDSLERIS 291

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +G+  KT   + +L  +  ++   + +  +++G
Sbjct: 292 DQGQR-KTQEQLEVLESLKQELATSQRELQVLQG 324


>gi|52081456|ref|YP_080247.1| septation ring formation regulator EzrA [Bacillus licheniformis
           ATCC 14580]
 gi|52786831|ref|YP_092660.1| septation ring formation regulator EzrA [Bacillus licheniformis
           ATCC 14580]
 gi|319647362|ref|ZP_08001584.1| septation ring formation regulator ezrA [Bacillus sp. BT1B_CT2]
 gi|81384819|sp|Q65G47|EZRA_BACLD RecName: Full=Septation ring formation regulator EzrA
 gi|52004667|gb|AAU24609.1| EzrA [Bacillus licheniformis ATCC 14580]
 gi|52349333|gb|AAU41967.1| EzrA [Bacillus licheniformis ATCC 14580]
 gi|317390709|gb|EFV71514.1| septation ring formation regulator ezrA [Bacillus sp. BT1B_CT2]
          Length = 564

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 73/226 (32%), Gaps = 24/226 (10%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            Q+  D + +L               K   +    KG     +Q       L K+    E
Sbjct: 208 LQSYIDDVPKLLASCKQTVPQEIAKLKAGYQEMIDKGYKLDHIQVEKELENLLKELKRAE 267

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY-----FLPEEIHQ 539
            ALL  L        +  +  A ++  +  +Q L++ L  +    +             +
Sbjct: 268 DALLDEL--------DLEEAAAIVQIIDETIQTLYNQLEHEVEAGQEILGKVPELAAALE 319

Query: 540 RLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----L 590
           +L           EL+K+  R          + E  +  + + ++Q      +      L
Sbjct: 320 KLEASKKDTEAETELVKKGYRLTTGELEKQQSYEKRLEMIEKQFEQVRERLDQKHVAYSL 379

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ--IHQIESQ 634
           L  +  +IEKQ+     + +  +  + +    E+  +  + Q++  
Sbjct: 380 LKEELADIEKQMEAAQREHDEYRDMLQMLRKEELQARELLKQLKQT 425


>gi|38347761|dbj|BAD01606.1| myosin heavy chain [Lethenteron japonicum]
          Length = 1934

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 78/217 (35%), Gaps = 13/217 (5%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             ++ +++    +   + +   R   ++ +H        + +Q  L     + +    +AA
Sbjct: 1611 RLKKKMEGDLNEMEIQLNHANRQAAESQKHLRNVQGQIKDLQVHLDDALRANEDHKEQAA 1670

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSD-----FVEQKYFLPEEIHQR 540
            +L     +  ++ E  +  + +     + +KL    L         +  +        ++
Sbjct: 1671 MLER--RNNLLVAEVEEMRSALE-QTEKARKLAEQELLGATERVQLLHSQNTSLINTKRK 1727

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            L      +L  +++  ++++       +  I D     ++          L R K+ +E+
Sbjct: 1728 LEG-DLSQLQSEVEESIQESRNADEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQ 1786

Query: 601  QIAQVTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
             +  +  + +  +   +      L ++  ++ ++ES+
Sbjct: 1787 TVKDLQHRLDEAEQIAMKGGKKQLQKLETRVRELESE 1823


>gi|71983975|ref|NP_492186.3| Non-muscle MYosin family member (nmy-2) [Caenorhabditis elegans]
 gi|14530418|emb|CAA99841.2| C. elegans protein F20G4.3, confirmed by transcript evidence
            [Caenorhabditis elegans]
 gi|14530566|emb|CAA99931.2| C. elegans protein F20G4.3, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 2003

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 30/215 (13%)

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            LQ    +            +   +         + + + +     SK+ +  E       
Sbjct: 1665 LQLDVTEARAAMEDALAGQRDAEKRARASEDEIKRLTADIQAVSSSKRKAEAERD----- 1719

Query: 492  INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
                 +++E    L    + N E ++L + +      +     E     L +    +  +
Sbjct: 1720 ----ELIEEV-SSLRASSFSNEEKRRLEAKVIDL---EDQLDEEASANELAQEKVRKSQQ 1771

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK--------QIA 603
            QL++   D  +  +  E    D        +AL +  R L +Q ++ E         QI 
Sbjct: 1772 QLEQMTADLAMERSVCERTESD-------KIALERANRDLKQQLQDAENTAVARLRTQIN 1824

Query: 604  QVTAKGEAEKTAILISILHEVH--IQIHQIESQEA 636
               AK  + +  + +    ++     + ++E++ A
Sbjct: 1825 VAEAKVSSLEQQLSLEEQDKMRQGRTLRRMETKMA 1859



 Score = 37.6 bits (85), Expect = 6.1,   Method: Composition-based stats.
 Identities = 69/553 (12%), Positives = 154/553 (27%), Gaps = 32/553 (5%)

Query: 99   PLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158
             L        +  +I+  L   IE             +  R       R +        +
Sbjct: 1112 ELAARQQLEREIREIRAQLDDAIEETNK--------EKAARQKAEKARRDMAEELESYKQ 1163

Query: 159  LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218
                 + +  L   L+ K   E   ++  L     +S    +  + +    I      + 
Sbjct: 1164 ELEESNDKTVLHSQLKAKRDEEYAHLQKQLEETVKSSEEVVEEMKAQNQKKIEELNETID 1223

Query: 219  AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278
                + +S  ++    +S E+   +    L N   A    +K  +            + E
Sbjct: 1224 QLKRQKISADKA---KSSAESDNENFRAELSNIASARLEAEKKRKAAETSLMEKDHKMRE 1280

Query: 279  GYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLV 338
               ++  L     +           +     L     +     D     L  A +     
Sbjct: 1281 MQSNLDDLMAKLSKMNNELESIQKAKSADETLNSNLLKKNASLDMQLSELTEASEEDRRT 1340

Query: 339  LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398
                          L          R     A EK+  E   +  +      E R     
Sbjct: 1341 RAT----LNNKIRQLEEDLAVAVEARDDALDAQEKIEKEVKEVKSL----LAEARKKLDE 1392

Query: 399  DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
            + R  +E   K     +  +K R   ++  RD+ ++  +K I E     +          
Sbjct: 1393 ENREVMEELRKKKEKELSAEKERADMAEQARDKAERAKKKAIQEAEDVQKELTDVVAATR 1452

Query: 459  QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA-----ILQEQYQELADIRYDNN 513
            +     R     L + + +   + +E  +   ++         +  E  ++   +     
Sbjct: 1453 EMERKMRKFDQQLAEERNNTLLAQQERDMAHQMLRDAETKALVLSNELSEKKDIVDQLEK 1512

Query: 514  ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            + + L   + +    +             +R   E L + ++Q+ +        +     
Sbjct: 1513 DKRTLKLEIDNLASTKDDAGKNVYELEKTKRRLDEELSRAEQQIIELEDALQLADDARSR 1572

Query: 574  VRQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHI 626
            V    Q         L  R      +K+ +  +I  +T + E+E+      I+   ++  
Sbjct: 1573 VEVNMQAMRSEFERQLASREEDEDDRKKGLTSKIRNLTEELESEQRARQAAIANKKKIES 1632

Query: 627  QIHQI-ESQEAMI 638
            QI ++ E  EA +
Sbjct: 1633 QISELTEKNEASL 1645


>gi|324501908|gb|ADY40845.1| 227 kDa spindle- and centromere-associated protein [Ascaris suum]
          Length = 1251

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 92/308 (29%), Gaps = 3/308 (0%)

Query: 334  AIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR 393
             I+ +   +        +L    +D D+ I+             +    ++    E   +
Sbjct: 699  DIEKLQTQITEYESQLMILRRHNDDLDTQIKTSHAKISTLENSLTSSQKEIGKLTELNMK 758

Query: 394  SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                  +   +   + N ++ +K++  +      I     +       E      Y ++ 
Sbjct: 759  LQKEKQDLMNMRQKMDNDLDILKEKLRKTEI--EIEKLRNESKISIENEEKIELAYKEEV 816

Query: 454  ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
            +R R  +   +          +  K+        L  ++   A   E+ +          
Sbjct: 817  SRVRLLEKELEEAKFEIEDSQRRLKQFEQENKDRLEFVLRTKASSSEKSETFESSELTEI 876

Query: 514  ELQKLWS-FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
             +++L           +          +L +    E  + +++Q+ +     A  E  I 
Sbjct: 877  RIKELKDRHKLDVEKLENERDELTRRIQLLDDEHAEKERTIEQQLSEIDALKAQQEIEIE 936

Query: 573  DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             ++         Y+      R +     ++A+ T +    K   L   L + H     ++
Sbjct: 937  RLKAEITSLETKYQNELEDERDQYSHNMELAKNTEEELRRKVTTLEKELKDAHDNESALQ 996

Query: 633  SQEAMIEG 640
            ++  + EG
Sbjct: 997  NERIIWEG 1004


>gi|322490068|emb|CBZ25330.1| putative kinesin [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 2531

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 84/240 (35%), Gaps = 13/240 (5%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D +        + DR +   +    + + Y  Y  K    +     ++   +        
Sbjct: 575 DPQQAKQDGCDLSDRWRD--EYLRKKEALYAEYQLKGTIEKLLARIAELEARLRECADDE 632

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYD--NNELQKLWSFLFSDFVEQKYFLP 534
                  E   L   +          +++    +    +EL++L + +     E +  + 
Sbjct: 633 LALHLTTEVETLQKALTEADYQMGLQRQILYGEFLMLEDELRELNTKMQEMKEEHEEAME 692

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSR 593
             + +      F E+ +  + ++R     S  T A   D     ++ +A L +R      
Sbjct: 693 GLLGEEAGR--FEEMKRGYETRLRALQSESDATLAASTDEIAALRRLVAELQERLAAKET 750

Query: 594 QKEEIEKQIAQVTAKGEAEKTA------ILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
           +  ++  +++ + AK +A+  A       L + L E+  +  + + Q AM+E   + S R
Sbjct: 751 ECADLADRLSALQAKYDADTCASQRVRSELEAQLEELRNRSEERDEQLAMVEAQLEESER 810



 Score = 37.2 bits (84), Expect = 10.0,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 49/130 (37%), Gaps = 15/130 (11%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR--QGYQQALALY 585
           +Q      ++  R  +    +             +         ++ R  +     LAL+
Sbjct: 366 QQAKQDGCDLSDRWRDEYLRKKEALYAEYQLKGTIEKLLARIAELEARLRECADDELALH 425

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQ-EAMI 638
                L+ + E ++K + +   +   +      +  +L   L E++ ++ +++ + E  +
Sbjct: 426 -----LTTEVETLQKALTEADYQMGLQRQILYGEFLMLEDELRELNTKMQEMKEEHEEAM 480

Query: 639 EG-FGKMSGR 647
           EG  G+ +GR
Sbjct: 481 EGLLGEEAGR 490


>gi|321465459|gb|EFX76460.1| hypothetical protein DAPPUDRAFT_306188 [Daphnia pulex]
          Length = 1999

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 65/216 (30%), Gaps = 22/216 (10%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRY---WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                R +L    +    E           +K  R+ D+    ++ +       + + +  
Sbjct: 1434 LDKSRKKLGSELEDTTVELESQRTKVLDLEKKQRNFDKVLMEEKTISERYAIERDNAERD 1493

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             RE    +  +N     +E  + LA I       ++L   L      Q            
Sbjct: 1494 AREKETKVLSLN-----RELEEALAKIDELERIRRQLQGELDDLANTQGTADKN------ 1542

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                    + +L+R  R      A  +  I ++    Q       R  +  +  +   ++
Sbjct: 1543 --------VHELERAKRALESQLAEQKTQIEELEDELQLTEDAKLRLEVNMQALKAQFER 1594

Query: 602  IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
              Q   +   EK   L+  L ++  ++     Q A+
Sbjct: 1595 DLQAREEQSEEKRRALVKQLRDLEAELEDERKQRAV 1630


>gi|313681434|ref|YP_004059172.1| ATP-dependent proteinase [Sulfuricurvum kujiense DSM 16994]
 gi|313154294|gb|ADR32972.1| ATP-dependent proteinase [Sulfuricurvum kujiense DSM 16994]
          Length = 807

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 70/216 (32%), Gaps = 22/216 (10%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
              +  + +K +         ++  AR    +   +  +++ +   + +    L+  A+L
Sbjct: 73  AGVIGSIMRKVVLPDGRIKVLFQGLARGHITEMIHENPLRAHVDLIQSTSVNELKMDAIL 132

Query: 489 LTLINHPAILQEQYQELADIRY----DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             L      L +              +N+E  ++   + S    +K    +   +R  E+
Sbjct: 133 EVLREKVRALSQVSNYFPPDLLRTIEENHEYNRIVDLICSSIKIKKENAYQLFIERDPEK 192

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA- 603
            F  L+ +L        +          ++R      +    +   L  Q ++I+K++  
Sbjct: 193 RFLMLIDEL--------IEETEANKLQKEIRSKVHSRIEKVNKEYFLKEQLKQIQKELGT 244

Query: 604 QVTAKGEAEKTAILISI---------LHEVHIQIHQ 630
                 E E+    +             E++ Q+ +
Sbjct: 245 DTHRDEEIEEFRKKLEAKKDKMHADAYKEINKQLER 280


>gi|257153472|ref|NP_001158016.1| disrupted in schizophrenia 1 protein isoform g [Homo sapiens]
 gi|238066715|gb|ACR40065.1| disrupted in schizophrenia 1 isoform 29 [Homo sapiens]
          Length = 662

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 95/354 (26%), Gaps = 45/354 (12%)

Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390
              + DL             +      DP S        A       S       W    
Sbjct: 271 TRVSADLAQAARNSSRPERDMHSLPDMDPGSSSSLDPSLAGCGGDGSSGSGDAHSWDTLL 330

Query: 391 ENRSFNTPDERAELEIHLKNCINHIK------DQKLRYYY--SQAIRDRLQQLFQKYITE 442
                   D        ++     +K      D      Y  ++ ++ RL+ L Q+ I+ 
Sbjct: 331 RKWEPVLRDCLLRNRRQMEVISLRLKLQKLQEDAVENDDYDKAETLQQRLEDLEQEKISL 390

Query: 443 HSGYGRYWKKNARH----RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL--------- 489
           H          +        Q   + R   +    G  +  P   E  LL          
Sbjct: 391 HFQLPSRQPALSSFLGHLAAQVQAALRRGATQQASGDDTHTPLRMEPRLLEPTAQDSLHV 450

Query: 490 ------TLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYF--LPEEIHQR 540
                  L+     LQ++ + L    +      Q+L   +     + ++       +  +
Sbjct: 451 SITRRDWLLQEKQQLQKEIEALQARMFVLEAKDQQLRREIEEQEQQLQWQGCDLTPLVGQ 510

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL---------- 590
           L      E+ K L   +  AG      E     +R   ++  +L    +           
Sbjct: 511 LSLGQLQEVSKALQDTLASAGQIPFHAE-PPETIRSLQERIKSLNLSLKEITTKVCMSEK 569

Query: 591 ----LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
               L ++  +IE Q+  +        +        ++  +I  + S+   +EG
Sbjct: 570 FCSTLRKKVNDIETQLPALLEAKMHAISGNHFWTAKDLTEEIRSLTSEREGLEG 623


>gi|224085002|ref|XP_002195849.1| PREDICTED: protein tyrosine phosphatase, receptor type, f
           polypeptide (PTPRF), interacting protein (liprin), alpha
           1 [Taeniopygia guttata]
          Length = 1142

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/271 (6%), Positives = 74/271 (27%), Gaps = 38/271 (14%)

Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
                  ++  E        +  +++Q +  +  + +    Q   ++            +
Sbjct: 159 EHHKALDEKVRERLRAALERVATLEEQLVDAH--RQVAALQQGSSREPAAGEREEREPKE 216

Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA--ALLLTLIN-HPAILQEQYQELADI 508
              +   +    + +    L++ +  +    +E   AL  ++      +   +   +   
Sbjct: 217 APPKLPWKDEAGRVVELQELLEKQNFEVVQAKERISALAASVAELEEDLGTARKDLIKSE 276

Query: 509 RYDNNELQKLWSFLFS---------------DFVEQKYFLPEEIHQRLCER--------- 544
              +   + L   L                    +++     +++ +L            
Sbjct: 277 EMSSKYQRDLREALAQKEDMEERITTLEKRYLAAQREATSIHDLNDKLENELANKESLHR 336

Query: 545 ---GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL----LSRQKEE 597
                   L++L          +      + +V     Q +A   + +     +     +
Sbjct: 337 QCEEKARHLQELLELAEQKLQQTMRKAETLPEVEAELAQRIAALTKAKERHGSIEEHLRQ 396

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
           +E Q+ +   +    +    ++   E + ++
Sbjct: 397 LETQLEEKNQELARARQREKMNE--EHNKRL 425



 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 74/219 (33%), Gaps = 24/219 (10%)

Query: 415 IKDQKLRYYYSQAIRDRLQQ---LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           IK +++   Y + +R+ L Q   + ++  T    Y    ++     D     +  + +  
Sbjct: 273 IKSEEMSSKYQRDLREALAQKEDMEERITTLEKRYLAAQREATSIHDLNDKLENELANKE 332

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
              +  ++ +     LL            + + L ++        +L   + +    ++ 
Sbjct: 333 SLHRQCEEKARHLQELLELAEQKLQQTMRKAETLPEVE------AELAQRIAALTKAKER 386

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                I + L +      L++ ++++  A       E +   +     + L+       L
Sbjct: 387 H--GSIEEHLRQ--LETQLEEKNQELARARQREKMNEEHNKRLSDTVDRLLSESNERLQL 442

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
                 +++++A +      E+   L+  L     QI +
Sbjct: 443 H-----LKERMAAL------EEKNTLLQELENTQKQIEE 470


>gi|159479330|ref|XP_001697746.1| hypothetical protein CHLREDRAFT_192775 [Chlamydomonas reinhardtii]
 gi|158274114|gb|EDO99898.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 4143

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 9/104 (8%)

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE--- 596
           RL      +L +QL+ +V +     A        +       +A  +R   L  +     
Sbjct: 814 RLISSDIADLKRQLEAEVAEKEAMRAALAEADGAIVALQSTQIAAVQRAESLEEELAQAR 873

Query: 597 ----EIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQ 634
               ++E+ IAQ+ A        +A  +  L ++  ++ Q+E +
Sbjct: 874 RLAADLERIIAQLKASHREVEGASATTLQELQDLKTRVAQLEDE 917



 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 75/231 (32%), Gaps = 19/231 (8%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              A R+ L QL  +     +   R  ++ A   + +   Q+ +  +  + +   +  L+E
Sbjct: 2385 LTAAREALAQLEAELAETEAAVERLQQRLAEAEESRDELQQQLA-AADEQRAELEEQLQE 2443

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            A      +          +E      + + LQ   + +     +    L EE+       
Sbjct: 2444 AVTARQALE---------EEWQAADGERSALQAELAEVKEAAADTNTRLREELESL--AA 2492

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI--EKQI 602
                L  +LD          A  E       +G +Q  A  +    L R    +   K +
Sbjct: 2493 ARERLANELDEARSALADTQAQLEEAQEQQAEGARQLAAKGQALEHLERDMAGVIDAKLL 2552

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG-----FGKMSGRL 648
             +   + +      L   L +   ++  ++++   +EG         SGR+
Sbjct: 2553 VEQQCREQGAAREALAGQLDDAQSRLQALQAELEGLEGRLEAVSATASGRI 2603



 Score = 37.2 bits (84), Expect = 8.1,   Method: Composition-based stats.
 Identities = 11/97 (11%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             +R      + L +   +     A  E     + +  +    L ++      Q+ E+E+Q
Sbjct: 2381 SQRDLTAAREALAQLEAELAETEAAVERLQQRLAEAEESRDELQQQLAAADEQRAELEEQ 2440

Query: 602  IAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            + +     +   E+          +  ++ +++   A
Sbjct: 2441 LQEAVTARQALEEEWQAADGERSALQAELAEVKEAAA 2477


>gi|158289385|ref|XP_001237372.2| AGAP000035-PA [Anopheles gambiae str. PEST]
 gi|157019030|gb|EAU77354.2| AGAP000035-PA [Anopheles gambiae str. PEST]
          Length = 2123

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 82/260 (31%), Gaps = 15/260 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               + E E         R E E  ++     +    +R    +A+ DR   L  +     
Sbjct: 1405 ERLQAELETARSERSQCRLEREQEMERLAQQL--ATVRTDLERAVADR-GALESQQTELV 1461

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
                   +  A         ++  QS++ +        L E      L+     LQ+  +
Sbjct: 1462 EARDEIERLRADLDAGHEAFEQHRQSAVER--EHNIEQLNER-----LVATQEQLQQALE 1514

Query: 504  ELADIRYDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
               ++   +  EL ++   L +   E+     +           GE    L   V     
Sbjct: 1515 ARKELEESHRCELIEMRKLLETAQQERLAAEQQLSEANESNAELGEECATLRTNVAALEQ 1574

Query: 563  WSATTEANIVD---VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
                    I       +  +  L   +    L ++ +E++  + + + +  A ++     
Sbjct: 1575 QLGEERDTIQRLTAANEALRGQLTQLQDSLTLKQRDQELDL-LRRESDELRARQSEQQSQ 1633

Query: 620  ILHEVHIQIHQIESQEAMIE 639
             L ++  Q+H+++   A ++
Sbjct: 1634 ELDDLKQQLHELDQARASLQ 1653


>gi|126307118|ref|XP_001376049.1| PREDICTED: similar to C219-reactive peptide (FLJ39207) [Monodelphis
            domestica]
          Length = 2110

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 11/123 (8%)

Query: 523  FSDFVEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEAN-------IVDV 574
             +   E +  L  ++   +  R    E +K+L+          A  E         +  +
Sbjct: 1664 LTIVEEDRNHLQSKLSDEIKARHELEEQIKKLEHDSSSLHSAKAHLENECKTLQQKVEIL 1723

Query: 575  RQGYQQ-ALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQI 631
             + YQQ  +AL K+      +++E E+++     K    AE+       + E+  ++ + 
Sbjct: 1724 NELYQQKEMALQKKLTQEEYERQEKEQKLTAADEKASLVAEEVKTYKQRIQEMEDELQKT 1783

Query: 632  ESQ 634
            E  
Sbjct: 1784 ERS 1786


>gi|261245063|ref|NP_001159699.1| myosin-2 [Bos taurus]
 gi|296476612|gb|DAA18727.1| myosin-2 [Bos taurus]
          Length = 1940

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1566 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQTMLDAEIRSRNDAIRLKKKMEG 1625

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       K     +     +Q  +  +L       +  L+E   L  
Sbjct: 1626 DLNEMEIQLNHANRMAAEALKNYRNTQAILKDTQIHLDDAL-----RGQEDLKEQ--LAM 1678

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1679 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1738

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1739 ITQIQGEMEDILQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1798

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1799 QNRLDEAEQLALKGGKKQIQKLEARVRELEGE 1830


>gi|118374012|ref|XP_001020198.1| Dynein heavy chain family protein [Tetrahymena thermophila]
 gi|89301965|gb|EAR99953.1| Dynein heavy chain family protein [Tetrahymena thermophila SB210]
          Length = 4830

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/261 (9%), Positives = 87/261 (33%), Gaps = 25/261 (9%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHI----KDQKLRYYYSQA---IRDRLQQLFQKYI 440
               + +   +  +  + +  +++ +  I    +D   +  Y +    + ++ +    +  
Sbjct: 3368 ELLKQQLQISQIQLQKSQKEVEDLMIKIEGESRDVNEKQKYVEQKTVLVEKEKAEILRIS 3427

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG--KLSKKPSLREAALLLTLINHPAIL 498
             +     +      R  ++   +    + + VK          +   A+++ L+  P+  
Sbjct: 3428 ADAEQDLQAAMPALRMAEEGLANLNKNKLAEVKSFTSPPAGIDVVMQAIMILLLKDPSWA 3487

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
              + + LA   +    L KL +       ++     E++      +   E ++Q+     
Sbjct: 3488 SAKKE-LAAPDF----LSKLQNIEKDKISQKTLLKIEKLTH--DPKMSIEKIQQISEAGA 3540

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
                W       +    + ++       +   L  +  + E+++  +      +  + L 
Sbjct: 3541 SMWRWVL----AMEMYAKAFKDIEPKRIKVNQLKERLAKSEEELQNL-----QDNLSKLQ 3591

Query: 619  SILHEVHIQIHQIESQEAMIE 639
              +  +  Q+ Q ++ +  +E
Sbjct: 3592 EKIMILQKQLEQAKTDKQNLE 3612


>gi|74694385|sp|Q75AF5|IMH1_ASHGO RecName: Full=Golgin IMH1
          Length = 887

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 93/288 (32%), Gaps = 20/288 (6%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVD-MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           +  +R Y     E     +    +   W+R   N        R E + H  N  ++IK+ 
Sbjct: 499 EEQVRQYNSKEIEDKKAFADSKTELERWQRTAANLEKQLERIRLETKRHDDNLESYIKEN 558

Query: 419 ---KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                R    Q   D LQ L      + S   +  ++      +       ++  L +  
Sbjct: 559 GKLSERLEVLQEKYDSLQNLKSNSGDQVSAIRKQCEELNSKLKEATKRVMSLEDELNETS 618

Query: 476 LSKKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
              +   REA  +  +IN     ++    +    +   + E  KL S L    + +K   
Sbjct: 619 TVLQERTREATTMRRMINSDRSSKDTKIRELEDRVAAASEERDKLKSEL-DVLLARKNHE 677

Query: 534 PEEIHQ------------RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
            +++               L E+     ++QL    +     S+T      ++    ++ 
Sbjct: 678 TQDLKNTNQELVVKINALELKEQELATEVQQLKVLNQTIRRHSSTAADGSEELELTVRKL 737

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
               +      R+ ++  +++  +  +  A K   L +    +  Q+ 
Sbjct: 738 KDSLRTSEKKMRELKDSNEELKSLNDELNA-KLDRLANRYKVLSTQLK 784


>gi|197100630|ref|NP_001127307.1| coiled-coil domain-containing protein 91 [Pongo abelii]
 gi|62286913|sp|Q5RCA7|CCD91_PONAB RecName: Full=Coiled-coil domain-containing protein 91; AltName:
           Full=GGA-binding partner
 gi|55727697|emb|CAH90600.1| hypothetical protein [Pongo abelii]
          Length = 405

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 79/218 (36%), Gaps = 19/218 (8%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           +L+Q       +        ++  +  +       +++   +K K  +  S ++      
Sbjct: 133 QLRQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDR----- 187

Query: 491 LINHPAILQEQYQELADIRYD-NNELQKL-----WSFLFSDFVEQKYFLPEEIHQRL--C 542
              +  + ++  QEL D+R   +  L  +        L      +K  L  +I + L   
Sbjct: 188 ---YKELQEKHKQELEDMRKAGHEALSIIVDEYKHQRLLEMLDTEKELLKGKIKEALIQQ 244

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE-KQ 601
            +   E+L++   + R     +  + A +   ++  + A+         + +K   E ++
Sbjct: 245 SQEQKEILEKCLEEERQRNKEALVSAAKLE--KEAMKDAVLKVVEEERKNSEKAHAEERE 302

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + +     + EK +  I    +   +I Q   + A+IE
Sbjct: 303 LWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIE 340


>gi|1346637|sp|P02565|MYH3_CHICK RecName: Full=Myosin-3; AltName: Full=Myosin heavy chain 3; AltName:
            Full=Myosin heavy chain, fast skeletal muscle, embryonic
 gi|212376|gb|AAA48972.1| myosin heavy chain [Gallus gallus]
          Length = 1940

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/267 (8%), Positives = 79/267 (29%), Gaps = 15/267 (5%)

Query: 376  VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             +    +D     + E       +    ++         I+ +       + +   L ++
Sbjct: 1571 NQVKSDIDRKIAEKDEEIDQLKRNHLRVVDSMQSTLDAEIRSRNEALRLKKKMEGDLNEI 1630

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
              +    +       K     +     +Q  +  +L       +  L+E   +  +    
Sbjct: 1631 EIQLSHANRQAAEAQKNLRNTQGVLKDTQIHLDDAL-----RSQEDLKEQ--VAMVERRA 1683

Query: 496  AILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             +LQ + +EL          +K+    L       +    +       ++     + Q+ 
Sbjct: 1684 NLLQAEIEELRAALEQTERSRKVAEQELLDASERVQLLHTQNTSLINTKKKLESDISQIQ 1743

Query: 555  RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKGE 610
             ++ D    +   E                 K+ +     L R K+ +++ +  +  + +
Sbjct: 1744 SEMEDTIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLDQTVKDLQHRLD 1803

Query: 611  AEKTAIL---ISILHEVHIQIHQIESQ 634
              +   L      + ++  ++ ++E +
Sbjct: 1804 EAEQLALKGGKKQIQKLEARVRELEGE 1830



 Score = 37.2 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 81/277 (29%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  +L   +    +       +      ELE   K     ++D +      
Sbjct: 1353 EEEQEAKGELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1412

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1413 NSKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQKNFDKILSEWKQKYEETQAEL 1472

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+  S L     E         
Sbjct: 1473 EASQKESRSLSTELFKMKNAYEESLDHLETLKRENKNLQQEISDLTEQIAEGGK------ 1526

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +  + +     +       R   +  +  +
Sbjct: 1527 -----------AIHELEKVKKQIEQEKSELQTALEEAEASLEHEEGKILR---VQLELNQ 1572

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++  I +  A+ + E   +  + L  V      ++++
Sbjct: 1573 VKSDIDRKIAEKDEEIDQLKRNHLRVVDSMQSTLDAE 1609


>gi|89073996|ref|ZP_01160502.1| condesin subunit B [Photobacterium sp. SKA34]
 gi|89050324|gb|EAR55828.1| condesin subunit B [Photobacterium sp. SKA34]
          Length = 1487

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 481  SLREAALLLTLIN-HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +L E  +L++ ++  P                  EL+ L   +      + YF   +  +
Sbjct: 918  ALAELEMLVSALDADPEQFDALQANYEAADQKLQELKTLIFAVADLAERRHYFSYADAVE 977

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG---YQQALALYKRFRLLSRQ-K 595
             L +    EL +QL  ++  A      +  ++   R     Y Q +A  K       +  
Sbjct: 978  LLSKS--SELNEQLKAKLATAEQARGLSRESLKQARAQANQYNQLMASLKSSHQAKMETV 1035

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            +E E+++ ++  + + E          E++ ++H
Sbjct: 1036 QEFERELQELGVRADVEAEERARIRRDELNDRLH 1069


>gi|327284401|ref|XP_003226926.1| PREDICTED: CAP-Gly domain-containing linker protein 1-like [Anolis
           carolinensis]
          Length = 1431

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/249 (10%), Positives = 71/249 (28%), Gaps = 3/249 (1%)

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                D R          +   +D  LR    + +R +L+        + S         
Sbjct: 489 QRELEDTRVATVSEKSRIMELEQDLLLRETEVKELRAKLESSKPAGDVDTSLSLLQEIST 548

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
            + +      +   +   +K K        +  +   L     + +E       +     
Sbjct: 549 LQEKMVTMSKEHEDELKALKEKFDTNEESFQTEMKAWLATKENMAKESESLKMKLVGAQK 608

Query: 514 ELQK---LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
           E  +   LW       +       EE+     +    +  +  + +++   + +      
Sbjct: 609 ENAEVTNLWKLKLESAIASHQQAMEELKTSFSKGAGAQSAEYAELKIQIEKMRAEHKSEI 668

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
                Q   +   L K    L  + +E+ ++  +     + +        L E+   +++
Sbjct: 669 SDLKAQQENERSHLSKEADALKEKLKEVAEENEKSLEALKTKLEKAEEQHLIELEDNLNK 728

Query: 631 IESQEAMIE 639
           ++  E  ++
Sbjct: 729 LQEAEIKVK 737


>gi|327271507|ref|XP_003220529.1| PREDICTED: myosin-7B-like [Anolis carolinensis]
          Length = 1944

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 86/275 (31%), Gaps = 36/275 (13%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               +      +        +L   +K  +   + +K      + +  +L++  +K   + 
Sbjct: 822  YTIQWNLRAFNVVKNWSWMKLFFKIKPLLKSAQTEKEMAILKEEM-QKLKEALEKSEAKR 880

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
                       + ++      +  Q +L   +           L+ T I   A ++E  +
Sbjct: 881  KELEEKQVSIIQEKNDLSLQLQAEQDNLADAEERCD------LLIKTKIQLEAKVKELME 934

Query: 504  ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH---------QRLCERGFGELLKQ-- 552
             L D    N++L      L  +  E K    +++          +   E     L+++  
Sbjct: 935  RLEDEEEMNSDLTSKKRKLEDECAELKK-DIDDLEITLAKVEKEKHATENKVKNLIEEMA 993

Query: 553  -----LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
                 + +  ++        +  + D++    +   L K    L +Q +++E  + Q   
Sbjct: 994  ALDEVIAKLTKEKKALQEAHQQALDDLQAEEDKVNTLTKAKVKLEQQVDDLESALEQEKK 1053

Query: 608  ------------KGEAEKTAILISILHEVHIQIHQ 630
                        +G+ + T   +  L     Q+ +
Sbjct: 1054 IRMDLERAKRKLEGDLKLTQESVMDLENDKQQLEE 1088


>gi|222097956|ref|YP_002532013.1| DNA repair ATPase [Bacillus cereus Q1]
 gi|221242014|gb|ACM14724.1| ATPase involved in DNA repair [Bacillus cereus Q1]
          Length = 999

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 96/278 (34%), Gaps = 27/278 (9%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           EDP +      K   ++ I +   L +  ++ E +   F+   E   L+    + +  ++
Sbjct: 414 EDPQAHETEKVKYLPQQFIEKICNLDNDKFESELKQVIFSHVIETERLQQQSLDELIELR 473

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
             + +      +++ L+ + +        +   +KK  + + +    +  +Q  L   ++
Sbjct: 474 TGRFKDN-ISLLKEELKHINKAIFDLEKLFTSDYKKKFQEKIEYKKKEIAVQQGLKPVEV 532

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            +  +             P I ++  +        + EL+ ++  +      +     + 
Sbjct: 533 VEVET------------DPQIQKKLEEL-------HGELENVYKNIDDSEGFKGKVNRDL 573

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                       +   ++   +   L+ A  E  +  +    ++ + +      L + K 
Sbjct: 574 -------SSIERVEGHIENFKKQYQLFIANCEKELGGIGLNIKEMMVVQTNLEALEKLKR 626

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           E+ +Q  Q+  K + +    L      +  +I +++ Q
Sbjct: 627 ELIEQKRQLDVKLQQQSDHSLFKTKETIEGEIRKLQVQ 664


>gi|198422412|ref|XP_002119192.1| PREDICTED: similar to WD repeat domain 65 [Ciona intestinalis]
          Length = 504

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 101/276 (36%), Gaps = 10/276 (3%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                +++      L +++ K   + +   + + +  +  + K      K Q+++  Y +
Sbjct: 12  KTEKEKEVAKHEEELAEVVDKHSKDMQDLESTNNQKLMLEYEKYQELQAKSQRMQEDYER 71

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            ++D   +  ++ + E + Y     +    + ++   +   Q    +    +     +  
Sbjct: 72  QLQDA-DEGKEQSLEELTEYYETKLQERGSQLEQANDEARQQQREYEETKRQIEEDADRE 130

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
           +L     +   L+++ +    ++ ++  ++K ++ L  +   +   +     ++L     
Sbjct: 131 ILDIKNKYERRLRDEIETNMRLKGESGIMRKKFNSLNKEIDSKNEEIKSMQQEKLK---L 187

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQI 602
             ++K L++ +          +  I D  +         +       +L  + +E++KQI
Sbjct: 188 ENVIKSLEKDIHGLKKEIQERDETIQDKEKRIYDLKKKNQELEKFKFVLDYKIKELKKQI 247

Query: 603 --AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +   K   E+   + S L   H Q  Q+E   A
Sbjct: 248 EPRENDIKAMKEQIQEMESELERFHKQNTQLELNIA 283


>gi|170039971|ref|XP_001847789.1| cp309 [Culex quinquefasciatus]
 gi|167863569|gb|EDS26952.1| cp309 [Culex quinquefasciatus]
          Length = 1051

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 78/225 (34%), Gaps = 18/225 (8%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +A R++ Q L      +     +    K+      +       ++     +  K    +
Sbjct: 257 LKAEREKSQLLLSTLKQQIESLNKTIGHKDELVSKLEKDILNYSKNEEKYLEQLKSLDAK 316

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP--------- 534
           E  L +   N+   L+E      D R+ N ++ +L S L                     
Sbjct: 317 ETELKIVQGNYKDRLREIEMLNEDNRFLNEDINRLKSELAKSSSAGSTSNVSYVQFLKQN 376

Query: 535 -EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF----R 589
            E+  + L E     LL +    +    +   +++ +  +++   +Q   + ++      
Sbjct: 377 CEKFEEELRETKV--LLTEKMLALERVRIELTSSQHDAEELKSQLKQKEMVMQQIGDDGN 434

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            L      I+ ++     + E E++A L + +  + +Q+ + ++ 
Sbjct: 435 SLHEALSGIQSKMQDKLRE-EQERSATLQAEIERLKVQLQRSDNS 478


>gi|119575207|gb|EAW54820.1| golgi autoantigen, golgin subfamily a, 3, isoform CRA_d [Homo
           sapiens]
          Length = 1390

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 528 EQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           E      E    ++ E       +L ++L+    +        ++     +Q  Q  L L
Sbjct: 646 EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTL 705

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGE-----AEKTAILISILHEVHIQIHQIESQEAMIE 639
            +R + L   ++E    + Q+T   E      +    L +   E+  ++ +++ + A  E
Sbjct: 706 LQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASRE 765


>gi|109129947|ref|XP_001098347.1| PREDICTED: oral-facial-digital syndrome 1 protein isoform 6 [Macaca
           mulatta]
          Length = 1013

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 88/227 (38%), Gaps = 17/227 (7%)

Query: 418 QKLRYYYSQAIRDRLQ-QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +     Y + I ++L+ ++ QK            K  A+ + +K  +             
Sbjct: 197 EIKLNEYKREIEEQLRAEMCQKLKFFKDTEIAKIKMEAKKKYEKELAMFQNDFEKACQAK 256

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           S+   LRE + L  +  H  I  E  +  A  +    ++  L      +   ++     E
Sbjct: 257 SEALVLREKSTLERIQKHQEI--ETKEIYAQRQLLLKDMDLLRG---REAELKQRVEAFE 311

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----QALALYKRFRLL 591
           ++Q+L E     + + L R+ ++   +  T +  + +    YQ       +    R    
Sbjct: 312 LNQKLQEEKHKSITEALRRREQNIKNFEETYDRKLKNELLKYQLELKDDYIIRTNRLIED 371

Query: 592 SRQKEE----IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            R+ +E    +++++  + +K   E+    ++ + E+ +++  +++Q
Sbjct: 372 ERKNKEKAVHLQEELTAINSK--KEELNQSVNRVKELELELESVKAQ 416


>gi|159474390|ref|XP_001695308.1| protein required for templated centriole assembly [Chlamydomonas
           reinhardtii]
 gi|37624751|gb|AAQ95705.1| variable flagellar number protein [Chlamydomonas reinhardtii]
 gi|37624753|gb|AAQ95706.1| variable flagellar number protein [Chlamydomonas reinhardtii]
 gi|158275791|gb|EDP01566.1| protein required for templated centriole assembly [Chlamydomonas
           reinhardtii]
          Length = 603

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 81/282 (28%), Gaps = 52/282 (18%)

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
                E E +S  +         ++++      + K    + + +   L+Q       + 
Sbjct: 27  ETLCVEVEQKSDCSRWRGDFTSRYIEDITAKTGNFKKFPVFVKMLLSALKQASDSVFVDL 86

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
             Y       +R    + P  R    +  +                 ++ + A     + 
Sbjct: 87  LTYQDLEVLKSRKAGGQAPPPRTQPPNNKR---------------YLIMTYAAEFDRVHY 131

Query: 504 ELADIRYDNNELQKLWSFLFSDFVE------------QKYFLPEEIHQRLCERGFGELLK 551
            L  +  +N + Q L   +     E                  E    R         LK
Sbjct: 132 PLPLLFEENPDPQHLKRIISQLRSEVEGLQVEAGNRRGGEVSAELRRLREENAALQRQLK 191

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR----------------QK 595
           Q++R     G  + ++EA      +   + L   ++ R L +                 +
Sbjct: 192 QMERSGSGVGAGAESSEA------RELARELRTVRKERDLLQARVEAAEAELERERGLHR 245

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEA 636
            E+ ++  +     +  +       + E+ ++I Q+ E  EA
Sbjct: 246 RELRRRAKEQQELVD--ELGRCKEQIRELKMRIRQLTEDLEA 285


>gi|16904563|dbj|BAB71953.1| male enhanced antigen-2 [Homo sapiens]
          Length = 1390

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 528 EQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           E      E    ++ E       +L ++L+    +        ++     +Q  Q  L L
Sbjct: 646 EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTL 705

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGE-----AEKTAILISILHEVHIQIHQIESQEAMIE 639
            +R + L   ++E    + Q+T   E      +    L +   E+  ++ +++ + A  E
Sbjct: 706 LQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASRE 765


>gi|1477559|gb|AAC47238.1| non-muscle myosin heavy chain II [Caenorhabditis elegans]
          Length = 2003

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 30/215 (13%)

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            LQ    +            +   +         + + + +     SK+ +  E       
Sbjct: 1665 LQLDVTEARAAMEDALAGQRDAEKRARASEDEIKRLTADIQAVSSSKRKAEAERD----- 1719

Query: 492  INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
                 +++E    L    + N E ++L + +      +     E     L +    +  +
Sbjct: 1720 ----ELIEEV-SSLRASSFSNEEKRRLEAKVIDL---EDQLDEEASANELAQEKVRKSQQ 1771

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK--------QIA 603
            QL++   D  +  +  E    D        +AL +  R L +Q ++ E         QI 
Sbjct: 1772 QLEQMTADLAMERSVCERTESD-------KIALERANRDLKQQLQDAENTAVARLRTQIN 1824

Query: 604  QVTAKGEAEKTAILISILHEVH--IQIHQIESQEA 636
               AK  + +  + +    ++     + ++E++ A
Sbjct: 1825 VAEAKVSSLEQQLSLEEQDKMRQGRTLRRMETKMA 1859



 Score = 37.9 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 69/553 (12%), Positives = 154/553 (27%), Gaps = 32/553 (5%)

Query: 99   PLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158
             L        +  +I+  L   IE             +  R       R +        +
Sbjct: 1112 ELAARQQLEREIREIRAQLDDAIEETNK--------EQAARQKAEKARRDMAEELESYKQ 1163

Query: 159  LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218
                 + +  L   L+ K   E   ++  L     +S    +  + +    I      + 
Sbjct: 1164 ELEESNDKTVLHSQLKAKRDEEYAHLQKQLEETVKSSEEVVEEMKAQNQKKIEELNETID 1223

Query: 219  AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278
                + +S  ++    +S E+   +    L N   A    +K  +            + E
Sbjct: 1224 QLKRQKISADKA---KSSAESDNENFRAELSNIASARLEAEKKRKAAETSLMEKDHKMRE 1280

Query: 279  GYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLV 338
               ++  L     +           +     L     +     D     L  A +     
Sbjct: 1281 MQSNLDDLMAKLSKMNNELESIQKAKSADETLNSNLLKKNASLDMQLSELTEASEEDRRT 1340

Query: 339  LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398
                          L          R     A EK+  E   +  +      E R     
Sbjct: 1341 RAT----LNNKIRQLEEDLAVAVEARDDALDAQEKIEKEVKEVKSL----LAEARKKLDE 1392

Query: 399  DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
            + R  +E   K     +  +K R   ++  RD+ ++  +K I E     +          
Sbjct: 1393 ENREVMEELRKKKEKELSAEKERADMAEQARDKAERAKKKAIQEAEDVQKELTDVVAATR 1452

Query: 459  QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA-----ILQEQYQELADIRYDNN 513
            +     R     L + + +   + +E  +   ++         +  E  ++   +     
Sbjct: 1453 EMERKMRKFDQQLAEERNNTLLAQQERDMAHQMLRDAETKALVLSNELSEKKDIVDQLEK 1512

Query: 514  ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            + + L   + +    +             +R   E L + ++Q+ +        +     
Sbjct: 1513 DKRTLKLEIDNLASTKDDAGKNVYELEKTKRRLDEELSRAEQQIIELEDALQLADDARSR 1572

Query: 574  VRQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHI 626
            V    Q         L  R      +K+ +  +I  +T + E+E+      I+   ++  
Sbjct: 1573 VEVNMQAMRSEFERQLASREEDEDDRKKGLTSKIRNLTEELESEQRARQAAIANKKKIES 1632

Query: 627  QIHQI-ESQEAMI 638
            QI ++ E  EA +
Sbjct: 1633 QISELTEKNEASL 1645


>gi|73994487|ref|XP_859351.1| PREDICTED: similar to Restin (Cytoplasmic linker protein-170
           alpha-2) (CLIP-170) (Reed-Sternberg intermediate
           filament associated protein) isoform 4 [Canis
           familiaris]
          Length = 1215

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 43/393 (10%), Positives = 115/393 (29%), Gaps = 32/393 (8%)

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
            AL    + + K+     S      +   DV++L ++ ++  ++S   A+ E ++     
Sbjct: 578 KALQAATEKLSKENESLKSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKG 637

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR-----GEDPDSFIRCYG 367
           +        +      +        +       +              G+          
Sbjct: 638 VGMETTEFVELKTQIEKMRLDYQHEIENLQNKQDSERSAHTKEIEALRGK---LMAVVKE 694

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
           K +  + I   L   +     E E+      +   +++          +  K+   ++  
Sbjct: 695 KESSLEAIKAKLDKAEDQHLVEMEDTLSKLQEAETKVKELEVLQAKCNEQTKVIDNFTSQ 754

Query: 428 IR---DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR- 483
           ++   ++L  L         G     K   +    +   + L      +   +   +   
Sbjct: 755 LKATEEKLLDLDALRKASSEGKSEIKKLRQQLEAAEKQIKNLEIEKNTESGKASSITREL 814

Query: 484 --EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             +  +L  L  + + + +  + L        ELQ L         E             
Sbjct: 815 QGKDLILNNLQKNLSEVSQVKEALE------KELQILKEKFADASEEAVSV--------- 859

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +R   E + +L ++       S   E    ++     +     +R   L + KE++E  
Sbjct: 860 -QRSMQETVNKLHQKEEQFNALSTELEKLRENLTDMEAKFRERDEREEHLIKAKEKLEND 918

Query: 602 IAQV--TAKGEAEKTAILISILHEVHIQIHQIE 632
           IA++   +   + +   +   L      + +++
Sbjct: 919 IAEIMKMSGDNSSQLTKMNDELRLKERNVEELQ 951


>gi|57105566|ref|XP_534659.1| PREDICTED: similar to Restin (Cytoplasmic linker protein-170
           alpha-2) (CLIP-170) (Reed-Sternberg intermediate
           filament associated protein) isoform 1 [Canis
           familiaris]
 gi|73994485|ref|XP_859319.1| PREDICTED: similar to Restin (Cytoplasmic linker protein-170
           alpha-2) (CLIP-170) (Reed-Sternberg intermediate
           filament associated protein) isoform 3 [Canis
           familiaris]
          Length = 1427

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 43/393 (10%), Positives = 115/393 (29%), Gaps = 32/393 (8%)

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
            AL    + + K+     S      +   DV++L ++ ++  ++S   A+ E ++     
Sbjct: 578 KALQAATEKLSKENESLKSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKG 637

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR-----GEDPDSFIRCYG 367
           +        +      +        +       +              G+          
Sbjct: 638 VGMETTEFVELKTQIEKMRLDYQHEIENLQNKQDSERSAHTKEIEALRGK---LMAVVKE 694

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
           K +  + I   L   +     E E+      +   +++          +  K+   ++  
Sbjct: 695 KESSLEAIKAKLDKAEDQHLVEMEDTLSKLQEAETKVKELEVLQAKCNEQTKVIDNFTSQ 754

Query: 428 IR---DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR- 483
           ++   ++L  L         G     K   +    +   + L      +   +   +   
Sbjct: 755 LKATEEKLLDLDALRKASSEGKSEIKKLRQQLEAAEKQIKNLEIEKNTESGKASSITREL 814

Query: 484 --EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
             +  +L  L  + + + +  + L        ELQ L         E             
Sbjct: 815 QGKDLILNNLQKNLSEVSQVKEALE------KELQILKEKFADASEEAVSV--------- 859

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +R   E + +L ++       S   E    ++     +     +R   L + KE++E  
Sbjct: 860 -QRSMQETVNKLHQKEEQFNALSTELEKLRENLTDMEAKFRERDEREEHLIKAKEKLEND 918

Query: 602 IAQV--TAKGEAEKTAILISILHEVHIQIHQIE 632
           IA++   +   + +   +   L      + +++
Sbjct: 919 IAEIMKMSGDNSSQLTKMNDELRLKERNVEELQ 951


>gi|24642555|ref|NP_523374.2| Chromosome-associated protein, isoform A [Drosophila melanogaster]
 gi|22832385|gb|AAF48625.2| Chromosome-associated protein, isoform A [Drosophila melanogaster]
          Length = 1200

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 79/229 (34%), Gaps = 15/229 (6%)

Query: 413 NHIKDQKLRYYYSQAIRD---RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
           + ++ QK R  Y+  I +   +L +L  +  +  +       +  +   ++G S+ + + 
Sbjct: 675 SRLEMQKKRTEYTSQIAEFEKKLSKLRNELKSTENNINSIVSEMQKTETKQGKSKDVFEK 734

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              + +L K+  +R            ++ Q +    +     ++   +L   L S    Q
Sbjct: 735 VQGEIRLMKEELVRIEQ--YRAPKERSLAQCKASLESMTSTKSSLEAELKQELMSTLSSQ 792

Query: 530 KYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----- 582
                ++++  +    +   E   Q  +              N+   R    QAL     
Sbjct: 793 DQREIDQLNDDIRRLNQENKEAFTQRMQFEVRKNKLDNLLINNLFRRRDELIQALQEISV 852

Query: 583 -ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               ++      +    EK+I +V +  + E+    +    ++  ++ Q
Sbjct: 853 EDRKRKLNNCKTELVSAEKRIKKVNS--DLEEIEKRVMEAVQLQKELQQ 899


>gi|332251187|ref|XP_003274729.1| PREDICTED: myosin-2 isoform 1 [Nomascus leucogenys]
 gi|332251189|ref|XP_003274730.1| PREDICTED: myosin-2 isoform 2 [Nomascus leucogenys]
          Length = 1941

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1567 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHIRIVESMQSTLDAEIRSRNDAIRLKKKMEG 1626

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1627 DLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQIHLDDAL-----RSQEDLKEQ--LAM 1679

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1680 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1739

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1740 ISQMQGEMEDILQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1799

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1800 QLRLDEAEQLALKGGKKQIQKLEARVRELEGE 1831


>gi|312378099|gb|EFR24762.1| hypothetical protein AND_10428 [Anopheles darlingi]
          Length = 433

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           E   +++ +  +  +A  ++ + L +Q  E+++++ +V+   +   TA + ++  ++   
Sbjct: 62  ETLRLEIEELQKGIVAAKEQAQNLEQQIAELQQRLQEVSGTSDQ-MTAAVTALKQQIKQH 120

Query: 628 IHQIESQEAMIEG 640
             ++ SQ   ++G
Sbjct: 121 KEKMNSQSKELKG 133


>gi|311250912|ref|XP_003124367.1| PREDICTED: myosin-7B-like [Sus scrofa]
          Length = 341

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 74/246 (30%), Gaps = 12/246 (4%)

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
             T D + +++   +      +   L+      ++  L++L           G    +  
Sbjct: 39  CPTQDLQIQMDKDARQHEELQEQYNLQEQRLSLLQTELEELCSAL------EGSERSRKL 92

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
             ++    ++R  + ++    L       E+ +      H  ++ E        +    +
Sbjct: 93  LQQEVVEVTERHNELNVQNQSLLGVKRKLESDVQRISYEHEELISEFRSADERAKKATTD 152

Query: 515 LQKLWSFLFSDFVEQKYFLP----EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
             ++   L  +     +       E   + L  +        L    R      A  +  
Sbjct: 153 ATRMAEELSREQDHCMHLEKIKNYEVTIKDLQAKVEEAAQLALKGGKRTIMKLEARIKEL 212

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQI 628
             ++    +Q +   K  R   R+ +E+  Q+ +     +   E    L + L     QI
Sbjct: 213 ETELDGEQKQHVETVKTLRKNERRLKELAFQMEEDHKTNQRMQELVEKLQNKLKVYKRQI 272

Query: 629 HQIESQ 634
            + E Q
Sbjct: 273 EEAEEQ 278


>gi|310643602|ref|YP_003948360.1| ATP-dependent protease la [Paenibacillus polymyxa SC2]
 gi|309248552|gb|ADO58119.1| ATP-dependent protease La [Paenibacillus polymyxa SC2]
          Length = 778

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 54/172 (31%), Gaps = 3/172 (1%)

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            L  G +       E A ++   ++    +   +EL +      E   L   + + F   
Sbjct: 82  KLPNGTIRVLVEGLERAEIIQYTDNEEYYEVMAKELHEAENVQPETDALMRTVLTQFEHY 141

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                +   + L      E   +L   +          + +I++      Q L       
Sbjct: 142 INLSKKVTPETLAAVSDIEEPGRLADVITSHLTLKIKEKQDILETID-VTQRLEKLLDIL 200

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQEAMIE 639
              R+  E+E++I Q   K   +      L   +  +  ++ + E +   +E
Sbjct: 201 NNEREVLELERKINQRVKKQMEKTQKEYYLREQMKAIQKELGEKEGRAGEVE 252


>gi|289621508|emb|CBI52291.1| unnamed protein product [Sordaria macrospora]
          Length = 903

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 1/123 (0%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           QKL + L +   +Q     E  + R  +      ++ L ++ R +     +       + 
Sbjct: 308 QKLRTILKNLRKKQADDEKEIGNLRAAKEKADREIENLRKRARHSDELEKSQNELQRRLD 367

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ- 634
           Q  ++   L    +       E+  Q+ + T + +A    +      +   +I ++E   
Sbjct: 368 QSQRELNNLRTEVKSKDAIIAELRSQLQKATEQADAMSAKVNDKAREQDQRRIAELEESV 427

Query: 635 EAM 637
           EA+
Sbjct: 428 EAL 430


>gi|284801753|ref|YP_003413618.1| DNA repair and genetic recombination [Listeria monocytogenes
           08-5578]
 gi|284994895|ref|YP_003416663.1| DNA repair and genetic recombination [Listeria monocytogenes
           08-5923]
 gi|284057315|gb|ADB68256.1| DNA repair and genetic recombination [Listeria monocytogenes
           08-5578]
 gi|284060362|gb|ADB71301.1| DNA repair and genetic recombination [Listeria monocytogenes
           08-5923]
          Length = 563

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 74/220 (33%), Gaps = 18/220 (8%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + +  RL  + +    E         +  R  +QK       + +               
Sbjct: 185 RELAQRLD-MLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQGEPG 243

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            L          + E  +++      + + + +   + S +   +     +I Q L +  
Sbjct: 244 GL--------EFVGEAMRQMETAASIHTDYKAVSEAISSSYYMLED-SMSQIRQSLDQLE 294

Query: 546 FG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-------LLSRQKEE 597
           F  E L Q++ ++ D           I D+ Q  Q+  +  ++          L  +   
Sbjct: 295 FQPEELNQIESRLNDLNQLKRKYGKTIEDIIQYEQEISSEMEKLTDSESHVGHLETKLAT 354

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           ++ ++ +  A     +    +++  ++  +++Q+  ++A+
Sbjct: 355 LKTELTKQAATLTDIRKKAAVTLEKQIKQELNQLYMEKAI 394


>gi|254581256|ref|XP_002496613.1| ZYRO0D04158p [Zygosaccharomyces rouxii]
 gi|238939505|emb|CAR27680.1| ZYRO0D04158p [Zygosaccharomyces rouxii]
          Length = 1587

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 87/251 (34%), Gaps = 15/251 (5%)

Query: 403  ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                 ++  I+ I D  +R  +   ++ +L    +K   E +       +    + +K  
Sbjct: 852  HRAKVVRERISSILDSVVRIQFL--VKRQLSARERKATYESNAALAIQSRIRSFQPRKKY 909

Query: 463  SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWS 520
            +        V+  + ++ ++ +   L +       LQE   +L +  I    N   K+ +
Sbjct: 910  NNNKRDVVKVQALVRRRSAMAKLQTLKSEAKSVNHLQEVSYQLENKVIELTQNLASKVKA 969

Query: 521  --FLFSDFVEQKYFLPE--EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
               + +   E +  L     +  ++ E+   E  K L+ Q           E    +   
Sbjct: 970  NKEMTARIAELQAALAASATLQSQIEEQK-REHSKALENQAMAHDHVYKDLEDQKKEAEL 1028

Query: 577  GYQQA----LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQ 630
              QQ      ++ +++  +    +   +++     +    KT    L   +  +  +I +
Sbjct: 1029 QMQQVGQEVRSITEKYNKIKEDSKSALEELENTKIQLRDSKTQNSDLHDQVKSLKEEISR 1088

Query: 631  IESQEAMIEGF 641
            +++  A   GF
Sbjct: 1089 LQNNMASGAGF 1099


>gi|225375794|ref|ZP_03753015.1| hypothetical protein ROSEINA2194_01426 [Roseburia inulinivorans DSM
           16841]
 gi|225212391|gb|EEG94745.1| hypothetical protein ROSEINA2194_01426 [Roseburia inulinivorans DSM
           16841]
          Length = 429

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 39/363 (10%), Positives = 103/363 (28%), Gaps = 32/363 (8%)

Query: 277 VEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID 336
           VEGY  V S  +  V   ++ L         RLL      ++                  
Sbjct: 78  VEGYHLVQSFAEGEVTPELAHLIGQELAD--RLLKGQFEVVITTHLNTRHYHNHIVWNSV 135

Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396
            ++      +          +  D   R YG +  E    +S+P V    ++E +     
Sbjct: 136 SMVDGHKYHSNAKSYYTEIRKISDDLCRKYGLSIIESNQKKSIPYVQWKAEQEGKPTWRM 195

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
                    +           +  +  Y+  +  +     +    E     R   KN   
Sbjct: 196 AIRLDIRESVQESYSWLQFLKEMEKRGYTWKLNRKY-ISLKAPGMERYIRLRSLGKNYSE 254

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH--------------PAILQEQY 502
            + +G   +     + +  +   P  +   +     ++              P  ++E  
Sbjct: 255 EEIRGQILQPKVKRVYQKAVQIHPKKKLTGIQALYYSYLYQMGVLPKRPKRSPYAVREDI 314

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
           ++L          +++        ++      E++          + + +L ++ R    
Sbjct: 315 RKLD---------RRIEQ--IEFLLKHDIITREQLAAY--REPLQKQIAELMKERRRLYR 361

Query: 563 WSATT--EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
                  E  + ++ +  ++     +    + +   EIE ++ +   + + EK       
Sbjct: 362 NGGRETGEERLSEINEELKRLRKEVRMTVQIEKHSLEIEARLQEAEEQSQNEKRVEDKER 421

Query: 621 LHE 623
           + +
Sbjct: 422 MQK 424


>gi|194225697|ref|XP_001501659.2| PREDICTED: similar to Centriolin (110 kDa centrosomal protein)
           (Centrosomal protein 1) [Equus caballus]
          Length = 2406

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/289 (9%), Positives = 78/289 (26%), Gaps = 22/289 (7%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK--- 416
              +R +     +    E           +  +       +        K     I+   
Sbjct: 496 HVTLRAHTPLDMQLEDKERKISAAQTRLSKLHDEIEKAEQQIVRATEEFKQLEEAIQLKK 555

Query: 417 -DQKLRYYYSQAIRDRLQQL--FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             +  +    + +  ++Q L   ++   +        ++    + ++    ++   SL  
Sbjct: 556 ISEAEKDLLFKQLSSKIQLLNKLRQEALDLEMQMEKQRQEIAEKQKEIKDLQIAIDSLDS 615

Query: 474 GK-----LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
                  +  +   +E  L +    +  +     + L+ I  +  E++ L   L    + 
Sbjct: 616 QDTKHCHMKAQKRGKEQQLDIMNKQYKQLESRLDEVLSRIAKETEEIKDLEQQLTEGQIA 675

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-------DVRQGYQQA 581
               L +E+   +   G  E L  +  Q   A       +           +V Q   Q 
Sbjct: 676 ANEALKKELEGVIS--GLQEYLGTVKGQAAQAQNECRKLQDEKETLLQRLTEVEQERDQL 733

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
             +      + ++  ++E  + +                L     ++  
Sbjct: 734 EIVALDAENMRKELADLESALQEQHEVN--ASLQQTQGDLTAYEAELEA 780



 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 80/288 (27%), Gaps = 40/288 (13%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +D    I        +   +++              +         E+   +      IK
Sbjct: 604 KDLQIAIDSLDSQDTKHCHMKAQKRGKEQQLDIMNKQYKQLESRLDEVLSRIAKETEEIK 663

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D        Q + +      +    E  G     ++       +    +     L   K 
Sbjct: 664 D------LEQQLTEGQIAANEALKKELEGVISGLQEYLGTVKGQAAQAQNECRKLQDEKE 717

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           +    L E             ++++  +L  +  D   ++K  + L S   EQ       
Sbjct: 718 TLLQRLTE-------------VEQERDQLEIVALDAENMRKELADLESALQEQHEVNAS- 763

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-----LL 591
                      +    L     +        +A    +R   ++   L +  +      L
Sbjct: 764 ---------LQQTQGDLTAYEAELEAQLKIRDAETNQLRADLEKLTRLSQLEQSALQAEL 814

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++K+ +E  + +     E E+         E+H Q+ Q++    +++
Sbjct: 815 EKEKQALENALGKAQLSEEKEQENS------ELHTQLQQLQDDNNLLK 856


>gi|154336505|ref|XP_001564488.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134061523|emb|CAM38553.1| hypothetical protein, unknown function [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1058

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 46/147 (31%), Gaps = 16/147 (10%)

Query: 502 YQELADIRYDNNELQKLWSFLFS-DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
              +  +    NEL+ L S L    + E+     E+   +L  R       +L    ++ 
Sbjct: 674 KDAIEQLEIKENELEDLRSALKDTRYREEMLENLEDEVAQLQ-REKEITETELGAVQKEM 732

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--------- 611
                   A      +  +    +      L+ + +++ +++ + T +            
Sbjct: 733 SDLRRDLRAAEDRAAEKSRDTERMKLDLDALNSRIQDLLEELEEKTDQYNQVIKDLDDFA 792

Query: 612 -----EKTAILISILHEVHIQIHQIES 633
                E    L+  L     ++ +++ 
Sbjct: 793 KNQSRENEKELLQRLLAREQELFELQE 819


>gi|62088830|dbj|BAD92862.1| dynactin 1 isoform 1 variant [Homo sapiens]
          Length = 459

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 104/342 (30%), Gaps = 10/342 (2%)

Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
                L +L    +      +   +   +  DL              L ++    +    
Sbjct: 65  EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 124

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                    L  E         ++E E       +   +LEI          D     Y 
Sbjct: 125 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 184

Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            + + ++  +L    +           +     +  +  +Q L      + +L ++ S  
Sbjct: 185 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 244

Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540
           E+ +        A L  +E  + L D   +  E +++L   +       +     + + R
Sbjct: 245 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 304

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E L     +VR+A       +  + D +Q  ++   L    + ++R+    ++
Sbjct: 305 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 364

Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA 636
              +   +   E      K A   +    + +++ Q+E  +A
Sbjct: 365 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQA 406


>gi|30268331|emb|CAD89954.1| hypothetical protein [Homo sapiens]
          Length = 1331

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 70/228 (30%), Gaps = 15/228 (6%)

Query: 416  KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            + ++ +    + +R+   +L  +            K     +D +       ++     K
Sbjct: 1001 QSEEKKKQLVRQVREMEAELEDERKQRSMAVAARKKLEMDLKDLEAHIDSANKNRDEAIK 1060

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +K   +    +  L         + + LA  + +  +L+ + + +     E       
Sbjct: 1061 QLRKLQAQMKDCMREL---DDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERA 1117

Query: 536  EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +   +   EL  ++        L           + Q  ++         L++ + 
Sbjct: 1118 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELINDRL 1174

Query: 596  EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIESQ 634
            ++   QI Q+      E++           L     E+ +++ ++E  
Sbjct: 1175 KKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKVKLQEMEGT 1222


>gi|4249699|gb|AAD13771.1| myosin heavy chain [Rana catesbeiana]
          Length = 713

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 84/266 (31%), Gaps = 15/266 (5%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           +    +D     + E       + +  LE    +  + I+ +       + +   L ++ 
Sbjct: 347 QVKSEIDRKIAEKDEEIDQIKRNSQRALESLQSSLDSEIRSRNDALRLKKKMEGDLNEME 406

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            +    +       K+    + Q   +Q  +  +L   +  K+        L        
Sbjct: 407 IQLSHANRQAAEAQKQLRNVQAQFKDAQLHLDDALRGIEDLKEQ-------LAISERRGN 459

Query: 497 ILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
           +L  + +E+       +  +K+    L       +    +       ++     + QL  
Sbjct: 460 LLTSEIEEIRSALEQTDRARKVAEQELLDVTERVQLLHTQNTSLINTKKKLESDVSQLQS 519

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKGEA 611
           +V +A   S   +                 K+ +     L R K+ +E+ +  +  + + 
Sbjct: 520 EVEEAIQESRNADEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQSVKDLQHRLDE 579

Query: 612 EKTAIL---ISILHEVHIQIHQIESQ 634
            +   L      L ++  ++ ++E++
Sbjct: 580 AEQLALKGGKKQLQKLEARVRELENE 605


>gi|15643735|ref|NP_228783.1| hypothetical protein TM0975 [Thermotoga maritima MSB8]
 gi|4981514|gb|AAD36054.1|AE001760_4 hypothetical protein TM_0975 [Thermotoga maritima MSB8]
          Length = 452

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 72/238 (30%), Gaps = 24/238 (10%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-----RDQKGPSQRLMQSSLVK 473
             R  Y   I  RL+++ +          +      +      +      +    S    
Sbjct: 189 ITRQKYLHDIEQRLKKIEEGVADIKEFLEKERDTGIQGNLLYLKQVYEALKNGDLSEYDI 248

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL------WSFLFSDFV 527
              + +    E      ++++   ++  +++L +        + L      +  + + F 
Sbjct: 249 NSFNSQLESIERQCQQAVLHYQIDMENCFKKLEEFEIGAWIGKGLKKQGEEFRKVLNSFF 308

Query: 528 EQKYFLPEEIHQRLCERGFGELL-----------KQLDRQVRDAGLWSATTEANIVDVRQ 576
               +L     +RL        L             L   +R     +   E  I     
Sbjct: 309 HYSKYLLLVFQERLVTIYLKTFLPVGKSILRVRINDLKESLRFLE-RTRKIEEFIEQSLD 367

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             ++  AL+   +  ++ K  + + + +   + E E    L   L     +++Q+E++
Sbjct: 368 RIEEFWALFTSEKTENQIKRSLRQDVRRNLRELE-EMRERLYESLANFEERLNQLEAE 424


>gi|609535|gb|AAB37740.1| 66 kDa neurofilament protein NF-66 [Mus musculus]
          Length = 501

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/315 (9%), Positives = 83/315 (26%), Gaps = 32/315 (10%)

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           G     +  S G D         +    +   +               +      +   L
Sbjct: 63  GLAYRRLPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRAL 122

Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
           E  L        +        Q  R  L+   ++  +  +      +++    + +    
Sbjct: 123 EAELAALRQRHAEPSRVGQLFQRERRELRAQLEEASSARAQAL--LERDGLAEEVQRLRA 180

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD----NNELQKLWS 520
           R  + S  +    +    ++  +    +    + ++    L ++ +     + E+ +L +
Sbjct: 181 RCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLA 240

Query: 521 FLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTE--------AN 570
            L +                L           + L  +   +      ++        A 
Sbjct: 241 TLQASSQAAAEVDVAVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNELAAR 300

Query: 571 IVDVRQGYQQALALYKR---------------FRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             +  +  ++ +  Y+R                  L RQ  E+E++       G  +   
Sbjct: 301 TTEAIRASREEIHEYRRHVQARTIEIEGLRGANESLERQILELEER-HSAEVAGYQDSIG 359

Query: 616 ILISILHEVHIQIHQ 630
            L S L     ++ +
Sbjct: 360 QLESDLRNTKSEMAR 374


>gi|85092774|ref|XP_959539.1| hypothetical protein NCU02411 [Neurospora crassa OR74A]
 gi|28920978|gb|EAA30303.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1491

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 92/269 (34%), Gaps = 18/269 (6%)

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY-YYSQAIRDR---LQQLFQKYITE 442
            R+T+       D+ A LE  ++     + ++  R     + +++    L+Q        
Sbjct: 683 HRQTQLDYQAQTDKIAALEDEVEVLQAALDEESERAGQDLEKLQEECMDLKQKLASAQAT 742

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
            S        +  +      SQ  ++  L     +    ++E  +L     +  +  E  
Sbjct: 743 SSAARASMNTSNSNAPTYNESQASLRIQLADANENLARIMKEQKMLQE--RYNNLDAEAR 800

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKY-----FLPEEIHQRLCERGFGELLKQLDRQV 557
               ++ +   E  +L + L     +           E+++ R  +      +++L  + 
Sbjct: 801 SLRINLSHATAERDELEAELQQHRDQGPDQDTFQLDQEKLNLRSAKTRLDNEIRRLREEN 860

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
           R       + + ++ +  +              L+++  +++ ++   ++    E     
Sbjct: 861 RSLLERQRSMQKSLEEEIE------KASAEEERLNQEILQLQAKVRDSSSSAPGELVTA- 913

Query: 618 ISILHEVHIQIHQIESQEAMIEGFGKMSG 646
              + E+  +I + E+Q+A    F  + G
Sbjct: 914 RRTIRELERRIAEFETQQATSSLFPNLGG 942


>gi|326926702|ref|XP_003209537.1| PREDICTED: homer protein homolog 2-like [Meleagris gallopavo]
          Length = 375

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/268 (11%), Positives = 76/268 (28%), Gaps = 28/268 (10%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            S    +M + + ++            +          +     ++   +      +   
Sbjct: 79  NSTITPNMTFTKTSQKFGQWADSRANTVFGLGFPSEQQLSKFAEKFQEVKEAAKLARDRS 138

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           Q+ I   S + +   +      +              G  ++     E   L   +   +
Sbjct: 139 QEKIETSSNHSQESGRETPSSTRASSVNGTDDEKASHGGSAEAQLKSENDKLKIALAQSS 198

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
              ++++          ELQ L                  +   L E      ++   +Q
Sbjct: 199 SNVKKWET---------ELQTLRE------------SNARLTTALQESAAS--IEHWKKQ 235

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA----- 611
                  +    + I ++ +   +     +R   LSR+ +E+E ++     + E      
Sbjct: 236 FSACKEENDQLRSKIEELEEQCNEINKEKERNAQLSRRLQELETELQDKELELEELRKQG 295

Query: 612 EKTAILISILHEVHIQIHQIESQEAMIE 639
           E    L+S    V  Q+   E++   +E
Sbjct: 296 EVIPQLMSECESVSQQLQDAENKNKDLE 323


>gi|302307404|ref|NP_984059.2| ADL037Wp [Ashbya gossypii ATCC 10895]
 gi|299788985|gb|AAS51883.2| ADL037Wp [Ashbya gossypii ATCC 10895]
          Length = 887

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 93/288 (32%), Gaps = 20/288 (6%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVD-MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           +  +R Y     E     +    +   W+R   N        R E + H  N  ++IK+ 
Sbjct: 499 EEQVRQYNSKEIEDKKAFADSKTELERWQRTAANLEKQLERIRLETKRHDDNLESYIKEN 558

Query: 419 ---KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                R    Q   D LQ L      + S   +  ++      +       ++  L +  
Sbjct: 559 GKLSERLEVLQEKYDSLQNLKSNSGDQVSAIRKQCEELNSKLKEATKRVMSLEDELNETS 618

Query: 476 LSKKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
              +   REA  +  +IN     ++    +    +   + E  KL S L    + +K   
Sbjct: 619 TVLQERTREATTMRRMINSDRSSKDTKIRELEDRVAAASEERDKLKSEL-DVLLARKNHE 677

Query: 534 PEEIHQ------------RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
            +++               L E+     ++QL    +     S+T      ++    ++ 
Sbjct: 678 TQDLKNTNQELVVKINALELKEQELATEVQQLKVLNQTIRRHSSTAADGSEELELTVRKL 737

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
               +      R+ ++  +++  +  +  A K   L +    +  Q+ 
Sbjct: 738 KDSLRTSEKKMRELKDSNEELKSLNDELNA-KLDRLANRYKVLSTQLK 784


>gi|297296382|ref|XP_001113236.2| PREDICTED: centrosomal protein of 152 kDa-like [Macaca mulatta]
          Length = 1656

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 33/338 (9%), Positives = 98/338 (28%), Gaps = 24/338 (7%)

Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367
           + L     ++V  FD D      A    +          +         +   +  +   
Sbjct: 652 QDLCNQMRQMVQDFDHDKR---EAVDRCERTYQQHHEAMKTQIRESLLAK--HALEKQQL 706

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
             A+E+  ++    +D               +   E+     +  + ++    +   +Q 
Sbjct: 707 FEAYERTHLQLRSELDK-----VNKEMTAVQECYLEVCREKDHLESTLRKTTEKEQQTQE 761

Query: 428 -IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            I+++L Q  +K             K           Q      + K +++     ++  
Sbjct: 762 KIKEKLIQQLEKEWQSKLDQTIKAMKTKTSDRGSQTDQVTTSDVISKKEMAIMIEEQKCI 821

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
           +   L     I  +   +  +I  +    + +   +       +     E+ +      +
Sbjct: 822 IQQHLEQEKDIAIKGAMKKLEIELELKHCENIAKQVEIAVQNARQRWLGELPEL---AEY 878

Query: 547 GELLKQLDRQVRDAGLWSATTEA--NIVDVRQGYQQALALYKRF----RLLSRQKEEIEK 600
             L++   ++  +    S        + + ++ ++  L   K+       L  +   +++
Sbjct: 879 QALVRAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELENMKKNILPGTELEEKIHSLQR 938

Query: 601 QIAQVTAKG----EAEKTAILISILHEVHIQIHQIESQ 634
           ++     +      AE          E   +I +I+ Q
Sbjct: 939 ELELKNEEVPVVIRAELAKARSEWNKEKQEEIRRIQEQ 976


>gi|209560149|ref|YP_002286621.1| Fc-gamma receptor [Streptococcus pyogenes NZ131]
 gi|209541350|gb|ACI61926.1| Fc-gamma receptor [Streptococcus pyogenes NZ131]
          Length = 415

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 67/219 (30%), Gaps = 10/219 (4%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + +    + L +          +Y ++  + +       +    +L            E 
Sbjct: 94  KELSFLSKVLDEAAKKYRESSDKYKQEIGQLKAAAEAEAQKALDALNNKNKQISDLTNEN 153

Query: 486 ALLLTLIN-HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
           A L   I  +   +Q   +E+A       EL  + S L +   E +    ++  +     
Sbjct: 154 AQLKEAIEGYVQTIQNASREIAA---KQQELAAVKSQLEAKNAEIEALKQQDASKTEEIA 210

Query: 545 GFGELLKQLDRQVRDAGLW----SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                   L+  +  A        A  +    +  +   Q   L        R+  +++ 
Sbjct: 211 KLQSEAATLENLLGSAKHELTELQAKLDTATAEKAKLESQVTTLENLLGSAKRELTDLQA 270

Query: 601 QIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAM 637
           ++    A+ E    + A L   L     ++  ++++ A 
Sbjct: 271 KLDAANAEKEKLQSQAAALEKQLEATKKELADLQAKLAA 309


>gi|198416718|ref|XP_002120131.1| PREDICTED: similar to CG34124 CG34124-PA, partial [Ciona
           intestinalis]
          Length = 347

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 8/125 (6%)

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----L 584
            +    +++      +   EL +Q+ RQ           +  I ++R+   +        
Sbjct: 202 GRIVDLDKLDSVTINKNVEELKEQVRRQEVKNTKELLKRQRRIDELRERITELTRDNTIR 261

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI--QIHQIESQE--AMIEG 640
            +R  +L+  KEE+E+ +       E E+     S + E H   Q+ Q++SQE  A+ E 
Sbjct: 262 LERLNVLANDKEELEQGLDHRQRTMELEQKGRKKSEIREQHRLVQLVQLQSQEIQALKEE 321

Query: 641 FGKMS 645
            G +S
Sbjct: 322 IGLLS 326


>gi|186659510|ref|NP_058935.2| myosin-6 [Rattus norvegicus]
 gi|149063938|gb|EDM14208.1| rCG23609, isoform CRA_a [Rattus norvegicus]
          Length = 1939

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/273 (9%), Positives = 88/273 (32%), Gaps = 14/273 (5%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
              +    ++     + E       +    ++    +     + +       + +   L +
Sbjct: 1567 FNQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNE 1626

Query: 435  LFQKYITEHSGYGRYWKKNARHRDQKGPSQ-RLMQSSLVKGKLSKKPSLREAA--LLLTL 491
            +  +    +       K     +     +Q +L  +      L +  ++ E    LL   
Sbjct: 1627 MEIQLSQANRIASEAQKHLKNAQAHLKDTQLQLDDAVRANDDLKENIAIVERRNTLLQAE 1686

Query: 492  INHPAILQEQYQE---LADIRY--DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +     + EQ +    LA+      +  +Q L S   S   ++K    +    +L     
Sbjct: 1687 LEELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDAD--LSQLQ-TEV 1743

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
             E +++       A            ++++    +  L +  + + +  ++++ ++ +  
Sbjct: 1744 EEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAE 1803

Query: 607  A---KGEAEKTAILISILHEVHIQIHQIESQEA 636
                KG  ++   L + + E+  ++   + + A
Sbjct: 1804 QIALKGGKKQLQKLEARVRELENELEAEQKRNA 1836


>gi|115947178|ref|NP_001070263.1| myosin-2 [Canis lupus familiaris]
 gi|122132088|sp|Q076A7|MYH2_CANFA RecName: Full=Myosin-2; AltName: Full=Myosin heavy chain 2; AltName:
            Full=Myosin heavy chain 2a; Short=MyHC-2a; AltName:
            Full=Myosin heavy chain, skeletal muscle, adult 2
 gi|83026760|gb|ABB96407.1| fast myosin heavy chain 2A [Canis lupus familiaris]
          Length = 1940

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1566 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQTMLDAEIRSRNDAIRLKKKMEG 1625

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1626 DLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQIHLDDAL-----RGQEDLKEQ--LAM 1678

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1679 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1738

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1739 ISQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1798

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1799 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1830


>gi|30722305|emb|CAD91136.1| hypothetical protein [Homo sapiens]
          Length = 1941

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1567 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHIRIVESMQSTLDAEIRSRNDAIRLKKKMEG 1626

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1627 DLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQIHLDDAL-----RSQEDLKEQ--LAM 1679

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1680 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1739

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1740 ISQMQGEMEDILQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1799

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1800 QLRLDEAEQLALKGGKKQIQKLEARVRELEGE 1831


>gi|1934963|emb|CAA72912.1| cytoskeletal protein [Mus musculus]
          Length = 3429

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 41/395 (10%), Positives = 114/395 (28%), Gaps = 23/395 (5%)

Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT-----EYQLRLL 310
           + L    R     + ++  ++  G  D+++        ++ S+          +  +  L
Sbjct: 88  HALNNVNRVLQVLHQNNVDLVNIGGTDIVAGNPKLTLGLLWSIILHWQVKDVMKDIMSDL 147

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
            + +   +L           +   +         G   N VL     D   +     K +
Sbjct: 148 QQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFDW-DEMVKMS 206

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             + +  +          E             + +  +    +    + L    +     
Sbjct: 207 PIERLDHAFDKAHTSLGIEKLLSPETVAVHLPDKKSIIMYLTSLF--EVLPQQVTIDAIR 264

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++ L +KY  E      + +      + + P      +            +    +L  
Sbjct: 265 EVETLPRKYKKECEEEEIHIQSAVLAEEGQSPRAETPSTVTEVDMDLDSYQIALEEVLTW 324

Query: 491 LINHPAILQE---QYQELADIRYDNNELQKLWSFLFSD-------FVEQKYFLPEEIHQR 540
           L++     QE      ++ +++      +     L +               + +    R
Sbjct: 325 LLSAEDTFQEQHDISDDVEEVKEQFATHETFMMELTAHQSSVGSVLQAGNQLMTQGTLSR 384

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E    E +  L+ +     + S   ++ + D     Q+     K+ + LS      E+
Sbjct: 385 EEEFEIQEQMTLLNARWEALRVESMERQSRLHDALMELQK-----KQLQQLSSWLALTEE 439

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           +I ++ +    +    L  +L E     + +E+++
Sbjct: 440 RIQKMESLPLGDDLPSLQKLLQEHKSLQNDLEAEQ 474


>gi|127741|sp|P02563|MYH6_RAT RecName: Full=Myosin-6; AltName: Full=Myosin heavy chain 6; AltName:
            Full=Myosin heavy chain, cardiac muscle alpha isoform;
            Short=MyHC-alpha
 gi|56655|emb|CAA34064.1| unnamed protein product [Rattus norvegicus]
          Length = 1938

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/273 (9%), Positives = 88/273 (32%), Gaps = 14/273 (5%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
              +    ++     + E       +    ++    +     + +       + +   L +
Sbjct: 1566 FNQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNE 1625

Query: 435  LFQKYITEHSGYGRYWKKNARHRDQKGPSQ-RLMQSSLVKGKLSKKPSLREAA--LLLTL 491
            +  +    +       K     +     +Q +L  +      L +  ++ E    LL   
Sbjct: 1626 MEIQLSQANRIASEAQKHLKNAQAHLKDTQLQLDDAVRANDDLKENIAIVERRNTLLQAE 1685

Query: 492  INHPAILQEQYQE---LADIRY--DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +     + EQ +    LA+      +  +Q L S   S   ++K    +    +L     
Sbjct: 1686 LEELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDAD--LSQLQ-TEV 1742

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
             E +++       A            ++++    +  L +  + + +  ++++ ++ +  
Sbjct: 1743 EEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAE 1802

Query: 607  A---KGEAEKTAILISILHEVHIQIHQIESQEA 636
                KG  ++   L + + E+  ++   + + A
Sbjct: 1803 QIALKGGKKQLQKLEARVRELENELEAEQKRNA 1835


>gi|327261257|ref|XP_003215447.1| PREDICTED: rho-associated protein kinase 2-like [Anolis carolinensis]
          Length = 1454

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 97/288 (33%), Gaps = 39/288 (13%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426
            + E     +     E +       +E  +        +  ++DQ     Y         +
Sbjct: 837  MTEKQLKQENNHLLEIKLSLEKQNNELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 896

Query: 427  AIRDRLQQLF------QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
             +++  ++        Q+ I E                 K  S++L +S   +    L K
Sbjct: 897  ELKEECEEKTKHCKEMQQKIQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 956

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +  ++E  +   +  H   L E+   +  +       + L S + +   E      EE++
Sbjct: 957  EKIMKELEIKEMMARHKQELSEKDATIGSLE---EANRTLTSDVANLANE-----KEELN 1008

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY----KRFRLLSR- 593
             +L  +   E + +++    D  L     E  +   R    QA+        R   + R 
Sbjct: 1009 NKL--KEVQERIVRINEDENDIDLLKTQYEKQLAYERTMKTQAVNKLAEVMNRKNPIQRG 1066

Query: 594  -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +++E E +   +  K E EK   ++        +I+++++Q A
Sbjct: 1067 ADTDVRRKEKENRKLHMELKSEREKLTQMMIKY---QREINEMQAQIA 1111


>gi|301762064|ref|XP_002916477.1| PREDICTED: myosin-7B-like [Ailuropoda melanoleuca]
          Length = 1892

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 87/279 (31%), Gaps = 13/279 (4%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
              +  +  +   L   D        N        +A L+   +     ++ +K       
Sbjct: 1522 ELSQVKAEVDRKLAEKDEECTNLRRNHQRAVESLQASLDAETRARNEALRLKKKMEGDLN 1581

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR--- 483
             +  +L    ++ +   +       +    +  +   QRL      + +  ++ +     
Sbjct: 1582 DLELQLGHAARQSMEAQAATRLLQAQLKEEQAGRDEEQRLAAELREQAQALERRAALLAT 1641

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
            E   L   +      +   ++  ++      L  L S       ++K    +    +L  
Sbjct: 1642 ELEELRAALEQGERSRRLAEQ--ELLEATERLNLLHSQNTGLLNQKKKLEVD--LSQLSG 1697

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                   ++ + + +     +        ++++    +  L +  + L +   E++ ++ 
Sbjct: 1698 EVEEAAQERREAEEKAKKAITDAA-MMAEELKKEQDTSAHLERMKKTLEQTVRELQARLE 1756

Query: 604  QVTAK---GEAEKTAILISILHEVHIQI--HQIESQEAM 637
            +       G  ++   L + + E+  ++   Q +  EA+
Sbjct: 1757 EAEQAALRGGKKQVQKLEAKVRELEAELDAEQKKHAEAL 1795


>gi|301625508|ref|XP_002941940.1| PREDICTED: coiled-coil domain-containing protein 77 isoform 1
           [Xenopus (Silurana) tropicalis]
 gi|301625510|ref|XP_002941941.1| PREDICTED: coiled-coil domain-containing protein 77 isoform 2
           [Xenopus (Silurana) tropicalis]
          Length = 494

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 52/430 (12%), Positives = 129/430 (30%), Gaps = 38/430 (8%)

Query: 218 IAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILV 277
                R     E  K L+  +  LF + +++   +   + L+    +D ++      ++ 
Sbjct: 92  WEMRQREEEISELQKALSDMQVYLFQEREHVLRLYSENDRLKIRELEDRKKIQKLLALVG 151

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
               DV    +     V                     R V   D     L+ + +A   
Sbjct: 152 TSEGDVTYFHKEPPNKVTIP-----------------QRAVQSGDPYARKLQRSGQAGTK 194

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397
                 PG +       + EDP   +      A +  + E   L     +   E+R    
Sbjct: 195 QAPLKAPGKQDRS-KEGKKEDPQILLL--QVEALQAQLEEQTRLSKEQIETLLEDRKVRV 251

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            + + + +   ++ +  + D+  +          L +  + ++          K     +
Sbjct: 252 EETQVQHQRD-QDKMKSMTDKLNKTQ------KLLYESTRDFLQLKFECRANEKSWMAEK 304

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
           D+        +  L      ++    E  +L   +   A      +E+  +     +  +
Sbjct: 305 DRLLRELDRCREQLALSSDPEQEREHEREILRLSLAEKAHRHSHSEEVKSLTEQLAQAHR 364

Query: 518 LWSFLFSDFVE-QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
           L        V  +           +    F E   ++ ++++         E       +
Sbjct: 365 LAEMYREQCVTLEDELGKIREEGDVGREIFKERSDKVAKRLQLMTQRYEALEKRRNMEVE 424

Query: 577 GYQQALALYK-RFRLLSRQKE--------EIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           GY+  + L + R + + +Q          + +  I     +G   KT  +   L  +  +
Sbjct: 425 GYKTDIKLLRQRLKDVEKQLFKVTLNIGPDQDLAILDAVRQGNK-KTQKIQGELRNLKAK 483

Query: 628 IHQIESQEAM 637
           I+ +E++  +
Sbjct: 484 IYGLENELRI 493


>gi|281204211|gb|EFA78407.1| hypothetical protein PPL_09058 [Polysphondylium pallidum PN500]
          Length = 672

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 87/271 (32%), Gaps = 13/271 (4%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-QKLRYYYSQAIRDRLQQL 435
               +   + +   +++ F       E +  ++  IN  KD ++     +Q++R+ +  L
Sbjct: 145 NEKEIAYKMVESNLKHQIFERDKLIVEKDKEIEKLINLQKDNEQELKQQTQSLRNTVTNL 204

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
                   +          +  +             +   L       E     +L+   
Sbjct: 205 LTDMKKVLASIKLRDDIIEQINELVKNCINNTPVVTIDYPLDNITPSNERISFESLVFDK 264

Query: 496 AIL----QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR-----LCERGF 546
                   +  Q L +I       + + S + S F +    L   I        L E  F
Sbjct: 265 DFSVDTSHDSIQSLLNIDNWRPSYRSIVSNIQSIFSQNLTQLSSIIGSHNQKMKLTESTF 324

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            + L +L+  +    L        +  V+    Q  ++        R+ +++ +Q++   
Sbjct: 325 KDQLLKLNESLNQLTLEKEENAFTMNTVKDDLSQKESMLSNANRDIRELKDLMEQLSDSN 384

Query: 607 AKGEA--EKTAILISILH-EVHIQIHQIESQ 634
            + E   E  A   S L  ++  ++ ++++ 
Sbjct: 385 REYELQVESDAAKFSGLKTKLETELEELKNT 415


>gi|225560724|gb|EEH09005.1| calmodulin-binding coil-coil protein [Ajellomyces capsulatus
           G186AR]
          Length = 1084

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 79/265 (29%), Gaps = 14/265 (5%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD--QKLRYYYSQAIRD 430
                 +  ++   + E +    +T + R +    L    + I+     +     Q   D
Sbjct: 405 AQAKTRISNLEEQMEAERDQYMNDTDELRMQHRAQLDQLRDQIESLKHDIEDQEGQHAAD 464

Query: 431 R-LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           R   +  ++ +              +    K  +     S   +   +   + ++  L  
Sbjct: 465 RDRWESQKRNLELQKSKVEQQATGYKRTLDKLQNVETTLSGREENLQNILENEKQRHL-- 522

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                  +L  Q +EL      N+++        +   E      E    R  E    E 
Sbjct: 523 ---QDEELLNRQIKEL------NDDIASKRQAAETQRQELMSVKEELRVARREESNLREK 573

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           L+ L+  +           A   ++++     L    +     RQ    +   A +    
Sbjct: 574 LQTLEDDIVVLQATLEDERAFAGNLQKSGTSDLEKQLQAANKERQVTRDKLANANIEIHN 633

Query: 610 EAEKTAILISILHEVHIQIHQIESQ 634
               +A L +   E+  QI+QI+ Q
Sbjct: 634 LRMSSAELEAERDELQSQINQIQGQ 658


>gi|194674635|ref|XP_585048.4| PREDICTED: huntingtin interacting protein-1-related [Bos taurus]
 gi|297484743|ref|XP_002694614.1| PREDICTED: KIAA0655 protein-like [Bos taurus]
 gi|296478621|gb|DAA20736.1| KIAA0655 protein-like [Bos taurus]
          Length = 1088

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 96/289 (33%), Gaps = 32/289 (11%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            ++      +        L++ ++ IK +  R  +   ++ ++  L  +   +     + 
Sbjct: 370 MKDDRDLQIEALKREVEMLRSELDKIKLEAQR--FISQLKGQVNALEAELEEQRKQKQKA 427

Query: 450 WKKNARHR----DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ-- 503
              N + R      +       ++  ++ +  KK S  EA        H  ++    +  
Sbjct: 428 LVDNEQLRHELAQLRAAQVEGERNQGLREEAEKKASATEARYNKLKEKHSELVNTHAELL 487

Query: 504 --------ELADIRYDNNELQKLWSFLF----------SDFVEQKYFLPEEIHQRLCERG 545
                   +L   +    E+ ++   L              +E++    E++ + L  + 
Sbjct: 488 RKNADTAKQLTVTQQSQEEVARVKEQLVFQVEQVKRESEMKLEEQSDQLEKLKRELEAKA 547

Query: 546 FG-----ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
                  E L + ++   +         A+  ++ +  QQ  A     + L+R+KE    
Sbjct: 548 GELVRVQEALSRTEQSGSELSSRLDALSADRDELSRVVQQREADLLAAQSLAREKEAALS 607

Query: 601 QIAQVTAKGEAEKTAILI-SILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           Q  Q  ++   E    L      E  +Q   ++ Q AM+      + R+
Sbjct: 608 QERQRISRERDELQGRLADKESQEQGLQQRLLDEQFAMLRATAAEAERI 656


>gi|195132600|ref|XP_002010731.1| GI21704 [Drosophila mojavensis]
 gi|193907519|gb|EDW06386.1| GI21704 [Drosophila mojavensis]
          Length = 1748

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 24/221 (10%)

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
           +Y     + L +L +   +  +      ++    R  + P                    
Sbjct: 572 HYINENMELLDKLEKLSSSSSAESIEIVERPTERRFSQRPGSEGEAEPEGDQASGSNTKQ 631

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
             A         PA+L     EL        EL+   +   +    +   L ++I   L 
Sbjct: 632 PTA---------PAVLPSFVSELTQTDLAVPELE--VNENLAQLRNENDELLQKI--ELF 678

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                E+L ++++   +     +  +      ++  +       +   L  +K  ++ ++
Sbjct: 679 TNERREVLAKMEQLQAENAALQSQLKLAEEQQQE-VKTTQETELKLEQLEAEKTTLQTEL 737

Query: 603 AQVTAKGEAEKT----------AILISILHEVHIQIHQIES 633
             +  + E EKT            L +    +  Q+ +++ 
Sbjct: 738 KLIQEQLETEKTTLQTELKLAKEQLQTESAALQAQLEELQR 778



 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 5/221 (2%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +++ L     + +   LQ +                  A                 ++ +
Sbjct: 111 QNRALLEQRKRDMAKSLQSVKSGMRQSIDLGSSMSDLRAPATAAPVSRHWSAADLQLQMQ 170

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
              +    E   L  L N   +++ +            EL  L + L     EQ   L  
Sbjct: 171 QQLQQQPSEEGRLKQLKNKMRLIEMKQNRKEQEL--QQELNDLRNELTRR-EEQIQQLEA 227

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL--YKRFRLLSR 593
            + Q+  +     LL++ +     A +         ++      +AL L  +     L  
Sbjct: 228 TLAQQSEQVDSQRLLQEQENTRLHAEIEQLRERNAELENSSEMLEALRLELHSAREQLLE 287

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           Q+       A      +A+    L   L E+  ++ ++   
Sbjct: 288 QQANQAAAEAAALVSTDAQVNVELAKQLQELEKELQELRDS 328


>gi|162454140|ref|YP_001616507.1| hypothetical protein sce5864 [Sorangium cellulosum 'So ce 56']
 gi|161164722|emb|CAN96027.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 1099

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 77/235 (32%), Gaps = 13/235 (5%)

Query: 418  QKLRYYYSQAI----RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            + LR  +++A+     +   +  ++     S       ++AR  + +        +   +
Sbjct: 804  EALRGEHARALEGLRSEHADENGRRDREHASALESLRGEHARALEGQAEEHARAIAQQTE 863

Query: 474  GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                   + RE+           ++ E+ Q + D         K  + L +   E++  L
Sbjct: 864  EHARVLAAARESFATQLAARERELIDEREQAVRDAE---QAHAKRVAELEARAAERQAQL 920

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                 Q L +       +  +R+      W+A         R    +      +   L  
Sbjct: 921  EAAHAQALADTRAAHQAETAEREAA----WAAQRRELDEVARGLSTELGQARSQIADLEA 976

Query: 594  QKEEIEKQIAQ--VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
            + +E+++Q+ Q        A +   L+  L E    I  ++ + A  E  G   G
Sbjct: 977  RTQELDRQLEQRAGELSAAAAERERLLGELAERAQSIEALQGRLAEAERRGSELG 1031


>gi|115445925|ref|NP_001046742.1| Os02g0439200 [Oryza sativa Japonica Group]
 gi|46805820|dbj|BAD17170.1| Cingulin-like [Oryza sativa Japonica Group]
 gi|113536273|dbj|BAF08656.1| Os02g0439200 [Oryza sativa Japonica Group]
 gi|125581935|gb|EAZ22866.1| hypothetical protein OsJ_06552 [Oryza sativa Japonica Group]
          Length = 722

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/206 (9%), Positives = 63/206 (30%), Gaps = 6/206 (2%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           L           +   +    NA     K      ++S + +     +    E ++L   
Sbjct: 211 LSHADDAIRAGEANAAQVELLNAEINRLKDSFNSELESKVKESAEKTRKLEAETSVLRIK 270

Query: 492 INHPAILQEQYQELADIRYDNNELQK-LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           +    + +   +++A++      L+  + + + +           +   +L E       
Sbjct: 271 LKKAKVAE---EKVAELEGAVEGLRADVANAIKARREADGLVGEWKKKAQLFEIKLELAN 327

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           +    +           +A    ++    Q   L+ +   L  +     + I     + +
Sbjct: 328 QSSILKAESMSSVMKELDAANALLQVKESQIALLHDKIESLEHEVVRQNEDINASGQRVD 387

Query: 611 AEK--TAILISILHEVHIQIHQIESQ 634
           A +     L + + E+  ++  +E +
Sbjct: 388 AAQRGALALRTEIQELRSRLGAMEQE 413


>gi|268557102|ref|XP_002636540.1| C. briggsae CBR-LIN-5 protein [Caenorhabditis briggsae]
          Length = 803

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 84/284 (29%), Gaps = 11/284 (3%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           +K  +  L L +   KRE   +  +  D     +          ++        +  R+ 
Sbjct: 245 QKKQINQLKLTNEELKREIAEKRESAEDAELRAQETSAALEAKQQEVDTLRQQLEKCREI 304

Query: 432 LQQLFQKY-ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--- 487
           L+   +   ++E        K      D +   + + +      + S     +E  L   
Sbjct: 305 LRLEQRHLEVSEAEKETIALKFATASEDLEKCMKEMRRLRDSNEQESDSYRQKERELTDK 364

Query: 488 LLTLINHPAILQEQYQELADIRYD-NNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCER 544
           L T       L E    L   +     E  +L   +   S    +     +     L + 
Sbjct: 365 LRTAKTENQYLTEHLSNLEMHKTSLQAENDRLKETVEELSLTSSRYKQDADNAMTTLGDE 424

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               L + +    R+       +++ I  +++  ++          L  +  E  K +  
Sbjct: 425 R-ERLKQTISTLQREHVERMNMSKSTIERIQRELEEERKDKNELSSLLNELNE--KALGT 481

Query: 605 VTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGR 647
                +  +  +      E    +I Q+E +    EGF  +  R
Sbjct: 482 DKETHDQAEGFLSARACLEGAKKRIQQLELELKGKEGFNAVLER 525


>gi|320038508|gb|EFW20443.1| Taz1-interacting factor 1 [Coccidioides posadasii str. Silveira]
          Length = 1358

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 101/300 (33%), Gaps = 29/300 (9%)

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
               ED     R  G  A      E++  +      E ++      + ++  +  + N  
Sbjct: 608 NHPPEDKTLAQRIMGLEAELATERENIAKLQREAHEERQSTVDKMEEVQSTKKDLMHNLE 667

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
           +  ++ +    + ++  ++L+   ++   E          ++R +++    +++ Q    
Sbjct: 668 SKQREFESERKFLESEANKLKIRLEEMEEELDRA-----MDSRDQEKHEAEEKIEQLQSK 722

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQK 530
             K        E            +  +   + ++    + E ++L   +       E  
Sbjct: 723 LDKALVAVEEAER-----------LRTQIQNQHSESSKFDAEKKELLDRIEKMDKVQEDH 771

Query: 531 YFLPEEIHQRLCERG-----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
             L   +H +L   G     F +L+K +D       + +  ++    D+ +  Q  L   
Sbjct: 772 IGLLRAVHLQLSPSGAPPTDFPQLVKAIDVLSEGLAIHARGSDKKAADLAEENQVLLEKV 831

Query: 586 KRFRL----LSRQKEEIEKQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQEAMIE 639
            +       L+++ E  +    +     + EK     + S L E   ++  +ES+ A  E
Sbjct: 832 SQIESEVERLNQKLESEKLAKKRALELLDHEKLSHQGVQSELKEERKRLRTLESKLAAGE 891


>gi|301771412|ref|XP_002921098.1| PREDICTED: myosin-6-like [Ailuropoda melanoleuca]
          Length = 1869

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +    +L  +++  V++        +  I D     ++          L R K+ +E+ I
Sbjct: 1661 DADLSQLQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTI 1720

Query: 603  AQVTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              +  + +  +   L      L ++  ++ ++E++
Sbjct: 1721 KDLQHRLDEAEQIALKGGKKQLQKLEARVRELENE 1755



 Score = 37.6 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 73/273 (26%), Gaps = 36/273 (13%)

Query: 386  WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
             +               +L   +K  +   + +K      +      + L          
Sbjct: 826  IQWNIRAFMGVKNWPWMKLYFKIKPLLKSAETEKEMATMKEEFARLKEAL-------EKS 878

Query: 446  YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
              R  +   +          L      +         R   L+   I   A ++E  + L
Sbjct: 879  EARRKELEEKMVSLLQEKNDLQLQVQAEQDNLNDAEERCDQLIKNKIQLEAKVKEMNERL 938

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE----------------RGFGEL 549
             D    N EL      L  +  E K    +++   L +                     L
Sbjct: 939  EDEEEMNAELTAKKRKLEDECSELKK-DIDDLELTLAKVEKEKHATENKVKNLTEEMAGL 997

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA-- 607
             + + +  ++        +  + D++    +   L K    L +Q +++E  + Q     
Sbjct: 998  DEIIAKLTKEKKALQEAHQQALDDLQAEEDKVNTLTKAKVKLEQQVDDLEGSLEQEKKVR 1057

Query: 608  ----------KGEAEKTAILISILHEVHIQIHQ 630
                      +G+ + T   I  L     Q+ +
Sbjct: 1058 MDLERAKRKLEGDLKLTQESIMDLENDKQQLEE 1090


>gi|217967288|ref|YP_002352794.1| ATPase AAA [Dictyoglomus turgidum DSM 6724]
 gi|217336387|gb|ACK42180.1| ATPase AAA-2 domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 894

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 64/213 (30%), Gaps = 13/213 (6%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y   + +R++Q+  + I        +  +           +  +    +        +  
Sbjct: 333 YRGELEERVKQILDEIIANQDNLIIFIDEIHTIVGAGAAGEGNLD---IANAFKPALARG 389

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E  L+         L E  + +          Q ++  +    VEQ   +   +  R   
Sbjct: 390 ELHLIGA-----TTLNEYQKYIEKDPALERRFQPIF--ISEPTVEQTITILRGLRDRFEA 442

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR--QKEEIEKQ 601
               ++  +      +      T             QA A   R  + SR  + +E+E +
Sbjct: 443 HHKVKITDEAIIAAAELSDKYITNRYLPDKAIDLIDQA-AARVRIMMTSRPAEIQELEAK 501

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           I  +  + E   +        E+  QI ++E +
Sbjct: 502 IQSLKREQEYASSRKQYDKAKELEEQIQKLEKE 534


>gi|159463892|ref|XP_001690176.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158284164|gb|EDP09914.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 594

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 5/120 (4%)

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            L     E      +  + R       + +  L  +           E  +         
Sbjct: 4   LLKEAQQEIALLRTDLFNTRRLAEERRQAVDALQSERERLAKHCEVVEGQLRSANAQLNH 63

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
              L +R   L  Q  +++ +I    A        IL   L +   Q   +  Q+A++EG
Sbjct: 64  VPELQQRCAHLESQLRKLQSEIETAHAAR-----RILEQELDDERRQRGAMTEQKALLEG 118


>gi|123472977|ref|XP_001319679.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121902468|gb|EAY07456.1| hypothetical protein TVAG_499420 [Trichomonas vaginalis G3]
          Length = 871

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 75/241 (31%), Gaps = 18/241 (7%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ----RLMQSSLVKG 474
             R    + +  +L  L  +       +    +  +R R Q   SQ     L Q  +   
Sbjct: 625 VKRELEIKEVGQKLDILRNQLRRGEKDFNLKEQDVSRIRRQIQDSQDQLTNLSQFDIQLK 684

Query: 475 KLSKKPSLREAALLLT-----LINHPAILQEQYQELADIRYDNN-ELQKL--WSFLFSDF 526
           +   +    +  LL        +     +         +   +    + L  +  L +  
Sbjct: 685 EKRDEIHFLQKELLQLKAERAAMEEELKIPINIHRWTLLESSDPQRFEALKRYQELQATL 744

Query: 527 VEQKYFLPEEIHQRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           VE K     ++  ++ E      EL  Q+ R+       +               +   L
Sbjct: 745 VE-KTKQVADLQDKIKEEESRYTELCAQVRRKPGVEVQQTVDEYKQSTKSEAYSLE--KL 801

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
            +R  +     +E  K++ +   +   ++   +     ++  +  +++ QEAM +  G  
Sbjct: 802 TQRLEMARDDVKEFRKELGEAEQELLQQRNKWIAQKKKDIKRR-RELQEQEAMCKELGIS 860

Query: 645 S 645
           S
Sbjct: 861 S 861


>gi|322372710|ref|ZP_08047246.1| ABC transporter, ATP-binding protein [Streptococcus sp. C150]
 gi|321277752|gb|EFX54821.1| ABC transporter, ATP-binding protein [Streptococcus sp. C150]
          Length = 639

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           +    +   ++   L +R   +  + E IE+++ ++TA          ++ L ++  ++ 
Sbjct: 561 DYQAQKANQKEMRKLSRRIEQIENELETIEERLEEITAAM---LETNEVAELSDLQKELD 617

Query: 630 QIE-SQEAMIEGFGKMSGRL 648
           ++  +QEA++E +  +S +L
Sbjct: 618 ELSVNQEALMEEWSDLSEQL 637


>gi|299536777|ref|ZP_07050085.1| chromosome partition protein smc [Lysinibacillus fusiformis ZC1]
 gi|298727789|gb|EFI68356.1| chromosome partition protein smc [Lysinibacillus fusiformis ZC1]
          Length = 1193

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 77/247 (31%), Gaps = 36/247 (14%)

Query: 414  HIKDQKLRYYYSQAIRDRLQQL----FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
             ++ +  +    + + ++  QL     Q    + +      + N   +  K  SQ +M  
Sbjct: 799  KLQGETEKDVLREQLAEKRSQLAVMQEQMSQVQITTAELALQLNKAQQKVKNISQEIMWL 858

Query: 470  SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ----------ELADIRYDNNELQKLW 519
               +          E  ++       A+ +   +          EL+ +     ELQ++ 
Sbjct: 859  QSDESTNHLSDEEVEEQVVTWKARRDALQETISEKKEQKIGQQQELSTLEEQLKELQRIH 918

Query: 520  SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
                            E+ +   E      ++QL+   +     +      I D      
Sbjct: 919  KGYLEAIRAN------ELKRNRVEFEMDNFIEQLEENYQLTFEEAEKEALAIEDEE---- 968

Query: 580  QALALYKRFRLLSRQKEEI----EKQIAQVTAKGE-----AEKTAILISILHEVHIQIHQ 630
                + +R +LL R  EE+       I +     E      E+   L++    +H  I +
Sbjct: 969  ---FVRRRVKLLKRSIEELGPVNLSAIEEYDRVLERHTFLTEQREDLLAAQETLHEAIKE 1025

Query: 631  IESQEAM 637
            ++ +  +
Sbjct: 1026 MDEEMTL 1032


>gi|297291190|ref|XP_002803839.1| PREDICTED: filamin-A-interacting protein 1-like [Macaca mulatta]
          Length = 1216

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 102/365 (27%), Gaps = 24/365 (6%)

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           +   DV+ + +              +    ++L  L    +L  +             +L
Sbjct: 95  QAREDVIHMLKTEKTKPEVLEAHYGSAEPEKVLRVLHRDAILAQEKSIGEDVYEKPISEL 154

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRETENR 393
                        +L                   E    +    +    D     E E  
Sbjct: 155 DRLEEKQKETYRRMLEQLLL--AEKCHRRTVYELENEKHKHTDYMNKSDDFTNLLEQERE 212

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                 E+ +     K   N  +  KLR    +     L  + ++ +       +  K  
Sbjct: 213 RLKKLLEQEKAYQARKEKENTKRLNKLRDELVKLKSFALMLVDERQMHIEQLGLQSQKVQ 272

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQELADIRYD 511
              +  +   ++L   +    +  +K    E         H A    QE  +  A +   
Sbjct: 273 DLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDF-----EHKASRFSQEHEEMNAKLANQ 327

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR-QVRDAGLWSATTEAN 570
            +  ++L   L       +       + +  E    EL  ++ + +  ++ L      A 
Sbjct: 328 ESHNRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLM-----AE 382

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           + ++R+   +     +       Q  E+ K++ +         +  L   + ++  ++ +
Sbjct: 383 VENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHH-----SKELKLEVEKLQKRMSE 437

Query: 631 IESQE 635
           +E  E
Sbjct: 438 LEKLE 442


>gi|254582250|ref|XP_002497110.1| ZYRO0D15642p [Zygosaccharomyces rouxii]
 gi|238940002|emb|CAR28177.1| ZYRO0D15642p [Zygosaccharomyces rouxii]
          Length = 1170

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 78/233 (33%), Gaps = 23/233 (9%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           I ++L++             +    + +    +        + ++K        +RE   
Sbjct: 700 ISNKLKEQESASAKTKEIQNKLNLVSHKLSIFQRTLNENPATQIIKRNDDLTRQIRECE- 758

Query: 488 LLTLINHPAILQEQYQEL-----ADIRYDNNE---LQKLWSFLFSDFVEQKYFLPE---- 535
              +    + + +   E+         ++N++   L+KL   + S   E           
Sbjct: 759 -EEIEQKQSYMSQLQDEIRKIQDDMEEFNNDKGTKLEKLKKEIDSLTKEIGKLDSITDKK 817

Query: 536 -EIHQ--RLCERGFGELLKQ----LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            +++Q  +L        +      L+        +    ++ I ++         ++   
Sbjct: 818 YDLYQNLQLETEQLTSEISSDEDALEHMNTSLDNFQNQKKSLIAELEHAEHTLADVHSEV 877

Query: 589 RLLSRQKEEIEKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               ++  +I++++ ++      +AEK + L   L ++   I + ++  + IE
Sbjct: 878 DEEKKRLVDIDEELKELNGLIHAKAEKKSSLELELQQLKNDITKFQNSTSGIE 930


>gi|257153467|ref|NP_001158013.1| disrupted in schizophrenia 1 protein isoform e [Homo sapiens]
 gi|238066689|gb|ACR40052.1| disrupted in schizophrenia 1 isoform 15 [Homo sapiens]
          Length = 695

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 95/354 (26%), Gaps = 45/354 (12%)

Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390
              + DL             +      DP S        A       S       W    
Sbjct: 271 TRVSADLAQAARNSSRPERDMHSLPDMDPGSSSSLDPSLAGCGGDGSSGSGDAHSWDTLL 330

Query: 391 ENRSFNTPDERAELEIHLKNCINHIK------DQKLRYYY--SQAIRDRLQQLFQKYITE 442
                   D        ++     +K      D      Y  ++ ++ RL+ L Q+ I+ 
Sbjct: 331 RKWEPVLRDCLLRNRRQMEVISLRLKLQKLQEDAVENDDYDKAETLQQRLEDLEQEKISL 390

Query: 443 HSGYGRYWKKNARH----RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL--------- 489
           H          +        Q   + R   +    G  +  P   E  LL          
Sbjct: 391 HFQLPSRQPALSSFLGHLAAQVQAALRRGATQQASGDDTHTPLRMEPRLLEPTAQDSLHV 450

Query: 490 ------TLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYF--LPEEIHQR 540
                  L+     LQ++ + L    +      Q+L   +     + ++       +  +
Sbjct: 451 SITRRDWLLQEKQQLQKEIEALQARMFVLEAKDQQLRREIEEQEQQLQWQGCDLTPLVGQ 510

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL---------- 590
           L      E+ K L   +  AG      E     +R   ++  +L    +           
Sbjct: 511 LSLGQLQEVSKALQDTLASAGQIPFHAE-PPETIRSLQERIKSLNLSLKEITTKVCMSEK 569

Query: 591 ----LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
               L ++  +IE Q+  +        +        ++  +I  + S+   +EG
Sbjct: 570 FCSTLRKKVNDIETQLPALLEAKMHAISGNHFWTAKDLTEEIRSLTSEREGLEG 623


>gi|254457276|ref|ZP_05070704.1| translation initiation factor IF-2, N-terminal domain protein
           [Campylobacterales bacterium GD 1]
 gi|207086068|gb|EDZ63352.1| translation initiation factor IF-2, N-terminal domain protein
           [Campylobacterales bacterium GD 1]
          Length = 886

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 96/281 (34%), Gaps = 14/281 (4%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY------Y 423
            +  L  + L   +  +K+E         +++  LE  L       K +           
Sbjct: 141 KYLALFKKKLIDQNTQFKQEKTEFEKYMKEQKQALEEKLIEEELKHKTKLEEQKIKTLTQ 200

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                   ++  ++K  T+     +   K  + + +   S+++   +    +  K+  L 
Sbjct: 201 LKDEFLKSIKTDYEKIHTKLDDLIQKELKLTQWQQELNQSEKMFSQAKEIFESQKEKVLN 260

Query: 484 EAALLLTLINHPAILQEQYQE--LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           E      + N   I   + +   ++ +   N  +++L+       + +K     +   +L
Sbjct: 261 EYK--EEIANEKEIFTHRQEAQKVSKLEEINKIIEELYKT-KEIDINKKEESIIQKESKL 317

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             +    L K+   + ++  L+    E    +++    +        + L  +  +++ +
Sbjct: 318 KIQENEILAKEKYLESQEDLLYKQAKEKVSEEIKTYQDKLKYHELEIQKLKEELFDLKDE 377

Query: 602 IAQVTAKGEAEKTAIL---ISILHEVHIQIHQIESQEAMIE 639
           + +     + +    L    S L  +  +I +I  Q+  IE
Sbjct: 378 LDEHEKFKDRDLPQELKEKNSELRILKEKIEEIRKQKREIE 418


>gi|195035865|ref|XP_001989392.1| GH11701 [Drosophila grimshawi]
 gi|193905392|gb|EDW04259.1| GH11701 [Drosophila grimshawi]
          Length = 1857

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 50/174 (28%), Gaps = 33/174 (18%)

Query: 494 HPAILQEQYQELADIRYDNNELQKL---------------WSFLFSDFVEQKYFLPEEIH 538
           +   + +  +++  +      LQ L                + L      Q+      + 
Sbjct: 554 YKEKIHDLEKKITKLVSATPSLQSLPPVEDNQALANAQAQIAELQEKLSAQEKQSEARLA 613

Query: 539 QRLCERG-FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL------ 591
           + L E     E +  L  +           + ++            L     LL      
Sbjct: 614 ESLEEEQRLRENIDYLKSESDTLKTELLGKDESLEKFSLSQCGIENLRHELALLKEENEK 673

Query: 592 ---------SRQKEEIEKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQ 634
                     +Q  E E+Q+A+   +     E+   + + L ++  +   +E++
Sbjct: 674 QSQQIQAKFEQQLAEKEQQLAEKEKQLTTNQEQLQQVSNELSKLKSKSDTLENE 727


>gi|189239061|ref|XP_970759.2| PREDICTED: similar to conserved hypothetical protein [Tribolium
           castaneum]
          Length = 518

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 61/222 (27%), Gaps = 7/222 (3%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
                IKD  LR   +Q +        +             +K      ++         
Sbjct: 249 PVAQEIKD--LREARAQRLAKIYASDDKTTDEVEKSLKEKKRKEEARLAEERAIAEEQAK 306

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              +     + + +E           A L+ Q ++            +       +    
Sbjct: 307 KEAEAARKAEIARQEQLAAQLAAERAAELERQAEQARQEELAKQAEIE--RMKREEEERA 364

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +      + +        + L +L+   R A        A   +      +  A      
Sbjct: 365 RLEEQRRLEEEAKAEEERQQLLRLEEIARQAEEEKERELARQAEELAELARQEAERAEQE 424

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            L R+++E E++ A++    E  +    ++ L     ++ ++
Sbjct: 425 RLEREQKEKEQKEAEL---AELARQETELAELERQEKELAEL 463


>gi|145337969|gb|AAI39787.1| HIP1 protein [Homo sapiens]
          Length = 517

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/214 (8%), Positives = 74/214 (34%), Gaps = 3/214 (1%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
             ++   +F    +             +        +   + S +K +L    +  +  +
Sbjct: 45  FDNKFDDIFGSSFSSDPFNFNSQNGVNKDEKDHLIERLYREISGLKAQLENMKTESQRVV 104

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-HQRLCERGF 546
           L    +   +  +  ++    +   ++ + L + L     +++     +     +  +  
Sbjct: 105 LQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQ 164

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
               +    + + + L     +    +     +Q     +    L R+K+E+E  + +++
Sbjct: 165 ANEQRYSKLKEKYSELVQNHADLLRKNAEVT-KQVSMARQAQVDLEREKKELEDSLERIS 223

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +G+  KT   + +L  +  ++   + +  +++G
Sbjct: 224 DQGQR-KTQEQLEVLESLKQELATSQRELQVLQG 256


>gi|50414445|gb|AAH77732.1| FKBP15 protein [Homo sapiens]
          Length = 662

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 86/281 (30%), Gaps = 23/281 (8%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL---KNCINHIK 416
            + +      + +     +   V       T   S       A  +            +K
Sbjct: 62  SNLMMEKRNNSLQTATENTQAKVTEELAAATAQVSHLQLKMTAHQKKETELQMQLTESLK 121

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +  L       ++ +L +L +    +     +  K+N +  + K  S     + L   K 
Sbjct: 122 ETDLLRGQLTKVQAKLSELQETS-EQAQSKFKSEKQNRKQLELKVTSLEEELTDLRVEKE 180

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           S + +L E           +  +E+  E+        EL KL   L    V       E+
Sbjct: 181 SLEKNLSERK--KKSAQERSQAEEEIDEIRKS--YQEELDKLRQLLKKTRVSTDQAAAEQ 236

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +   L +       +      +   L ++  + ++   ++   Q  A  ++   L  +  
Sbjct: 237 L--SLVQAELQTQWE-----AKCEHLLASAKDEHLQQYQEVCAQRDAYQQKLVQLQEKCL 289

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            ++ QI  +T + E          + E+     Q+   EA 
Sbjct: 290 ALQAQITALTKQNE--------QHIKELEKNKSQMSGVEAA 322


>gi|19882261|gb|AAC00208.2| paranemin [Gallus gallus]
          Length = 1748

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 17/145 (11%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +     LA +++   E + L + +     E     P           + E L+ L  
Sbjct: 22  DLNKRLEAYLARVKFLEEENEGLRAEI-QSTKENPAGDP-------RRARYEEELRSL-- 71

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
             RDA   + T +      R    + +  +  R +     +EE ++Q++    + E E+ 
Sbjct: 72  --RDALHRAFTEKCAAELARDNLYEEVQHVRSRCQKEQAAREEAKRQLSSSKKELEEERR 129

Query: 615 AILISILHEVHIQIHQIESQEAMIE 639
           A +   L E  +Q+   +  EA++E
Sbjct: 130 AQI--WLKERAVQLE--KEVEALLE 150


>gi|47218355|emb|CAG04187.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2252

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 75/203 (36%), Gaps = 10/203 (4%)

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
            ++L+Q+   E        +K+ +   +K      +++SL + K       RE +L+    
Sbjct: 1219 KELWQQQKVELESQLASLEKDLQDSREKEVLLASLETSLRETKD------RERSLMEESS 1272

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                  QE  + L   +  +N  ++L + L         +  E    R         +++
Sbjct: 1273 RREVQAQELLRSLETEK--DNLEERLMNQLAQLNGSIAGYQQEAADNREHLAQLQREVER 1330

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--KGE 610
            L+    +    ++        + +  +QA          S ++ E+E+Q+       +G 
Sbjct: 1331 LETARAELDAQASCERDRAARLEEDMRQARRERAEAEAESGRRRELEQQLRSAQRVKEGS 1390

Query: 611  AEKTAILISILHEVHIQIHQIES 633
              +   L  +L E  +++ Q++ 
Sbjct: 1391 QSRARQLEELLREKQLEVRQLQK 1413


>gi|269784731|ref|NP_573518.2| protein Hook homolog 2 isoform 1 [Mus musculus]
 gi|51593287|gb|AAH80744.1| Hook homolog 2 (Drosophila) [Mus musculus]
 gi|74139437|dbj|BAE40859.1| unnamed protein product [Mus musculus]
 gi|74217081|dbj|BAE26639.1| unnamed protein product [Mus musculus]
          Length = 716

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 84/272 (30%), Gaps = 32/272 (11%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  DE  +     +     +   + R    Q +R +++QL ++         +  ++  R
Sbjct: 295 DEMDELRQSSERARQLEATLNSCRRRLGELQELRRQVRQLEERNAGHAERTRQLEEELRR 354

Query: 456 HRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLT--LINHPAILQEQYQEL----ADI 508
               +     +  Q   ++G+  ++    E  L     L     ++ ++ + L      +
Sbjct: 355 AGSLRAQLEAQRRQVQELQGQWQEEAMKAEKWLFECRNLEEKCDLVTKEKERLLTERDSL 414

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLP-----EEIHQRLCERGFGELLKQLDRQVRDAGLW 563
           R  N EL+                 P     E +   +      E L +L  + +     
Sbjct: 415 REANEELRCAQLQPRGLAQADLSLDPTPSGLENLAAEILPAELRETLVRLQLENKRLCQQ 474

Query: 564 SATTEANIVDVRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKGE-- 610
            A       ++++  ++A                +   L  Q EE++K + +   K E  
Sbjct: 475 EAADRERQEELQRHLEEANRARHGLEAQQRLNQQQLSELRAQVEELQKALQEQGGKTEDP 534

Query: 611 -------AEKTAILISILHEVHIQIHQIESQE 635
                   +    L     E+  +   IE  E
Sbjct: 535 TLLKRKLEDHLQKLHEADLELQRKREYIEELE 566



 Score = 37.2 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA-KGE 610
           +L+    D  L     E  + +++Q  Q   +L +  + L  + +E+ +   +    +  
Sbjct: 254 RLESSREDDRLRCLELEREVAELQQRNQALTSLSQEAQALKDEMDELRQSSERARQLEAT 313

Query: 611 AEKTAILISILHEVHIQIHQIESQEA 636
                  +  L E+  Q+ Q+E + A
Sbjct: 314 LNSCRRRLGELQELRRQVRQLEERNA 339


>gi|269784735|ref|NP_001161463.1| protein Hook homolog 2 isoform 2 [Mus musculus]
 gi|33416768|gb|AAH55881.1| Hook homolog 2 (Drosophila) [Mus musculus]
 gi|74185069|dbj|BAE39137.1| unnamed protein product [Mus musculus]
          Length = 715

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 84/272 (30%), Gaps = 32/272 (11%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  DE  +     +     +   + R    Q +R +++QL ++         +  ++  R
Sbjct: 295 DEMDELRQSSERARQLEATLNSCRRRLGELQELRRQVRQLEERNAGHAERTRQLEEELRR 354

Query: 456 HRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLT--LINHPAILQEQYQEL----ADI 508
               +     +  Q   ++G+  ++    E  L     L     ++ ++ + L      +
Sbjct: 355 AGSLRAQLEAQRRQVQELQGQWQEEAMKAEKWLFECRNLEEKCDLVTKEKERLLTERDSL 414

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLP-----EEIHQRLCERGFGELLKQLDRQVRDAGLW 563
           R  N EL+                 P     E +   +      E L +L  + +     
Sbjct: 415 REANEELRCAQLQPRGLAQADLSLDPTPSGLENLAAEILPAELRETLVRLQLENKRLCQQ 474

Query: 564 SATTEANIVDVRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKGE-- 610
            A       ++++  ++A                +   L  Q EE++K + +   K E  
Sbjct: 475 EAADRERQEELQRHLEEANRARHGLEAQQRLNQQQLSELRAQVEELQKALQEQGGKTEDP 534

Query: 611 -------AEKTAILISILHEVHIQIHQIESQE 635
                   +    L     E+  +   IE  E
Sbjct: 535 TLLKRKLEDHLQKLHEADLELQRKREYIEELE 566



 Score = 37.2 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA-KGE 610
           +L+    D  L     E  + +++Q  Q   +L +  + L  + +E+ +   +    +  
Sbjct: 254 RLESSREDDRLRCLELEREVAELQQRNQALTSLSQEAQALKDEMDELRQSSERARQLEAT 313

Query: 611 AEKTAILISILHEVHIQIHQIESQEA 636
                  +  L E+  Q+ Q+E + A
Sbjct: 314 LNSCRRRLGELQELRRQVRQLEERNA 339


>gi|41688577|sp|Q7TMK6|HOOK2_MOUSE RecName: Full=Protein Hook homolog 2; Short=mHK2
 gi|26334885|dbj|BAC31143.1| unnamed protein product [Mus musculus]
          Length = 716

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 84/272 (30%), Gaps = 32/272 (11%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  DE  +     +     +   + R    Q +R +++QL ++         +  ++  R
Sbjct: 295 DEMDELRQSSERARQLEATLNSCRRRLGELQELRRQVRQLEERNAGHAERTRQLEEELRR 354

Query: 456 HRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLT--LINHPAILQEQYQEL----ADI 508
               +     +  Q   ++G+  ++    E  L     L     ++ ++ + L      +
Sbjct: 355 AGSLRAQLEAQRRQVQELQGQWQEEAMKAEKWLFECRNLEEKCDLVTKEKERLLTERDSL 414

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLP-----EEIHQRLCERGFGELLKQLDRQVRDAGLW 563
           R  N EL+                 P     E +   +      E L +L  + +     
Sbjct: 415 REANEELRCAQLQPRGLAQADLSLDPTPSGLENLAAEILPAELRETLVRLQLENKRLCQQ 474

Query: 564 SATTEANIVDVRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKGE-- 610
            A       ++++  ++A                +   L  Q EE++K + +   K E  
Sbjct: 475 EAADRERQEELQRHLEEANRARHGLEAQQRLNQQQLSELRAQVEELQKALQEQGGKTEDP 534

Query: 611 -------AEKTAILISILHEVHIQIHQIESQE 635
                   +    L     E+  +   IE  E
Sbjct: 535 TLLKRKLEDHLQKLHEADLELQRKREYIEELE 566



 Score = 37.2 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA-KGE 610
           +L+    D  L     E  + +++Q  Q   +L +  + L  + +E+ +   +    +  
Sbjct: 254 RLESSREDDRLRCLELEREVAELQQRNQALTSLSQEAQALKDEMDELRQSSERARQLEAT 313

Query: 611 AEKTAILISILHEVHIQIHQIESQEA 636
                  +  L E+  Q+ Q+E + A
Sbjct: 314 LNSCRRRLGELQELRRQVRQLEERNA 339


>gi|147901069|ref|NP_001079478.1| serine/threonine-protein kinase TAO1-B [Xenopus laevis]
 gi|78099270|sp|Q7ZYJ0|TAO1B_XENLA RecName: Full=Serine/threonine-protein kinase TAO1-B; AltName:
           Full=Thousand and one amino acid protein 1-B
 gi|27694647|gb|AAH43764.1| MGC52943 protein [Xenopus laevis]
          Length = 1001

 Score = 39.1 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 56/158 (35%), Gaps = 25/158 (15%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              + + L + L     + ++   + + +RL E    +L    ++         +T    
Sbjct: 733 QTRQYKALRNHLLKSTPKNEH---KAVLKRLKEEQTRKLAILAEQYDHSINEMLSTQALR 789

Query: 571 IVDVRQGYQQALALYKRFRLL-----------------SRQKEEIEKQI---AQVTAKGE 610
           + + ++   Q L +  +  L                   R+  E+E+++     +  +  
Sbjct: 790 LDEAQEAECQVLKMQLQQELELLNAYQSKIKMQAEAQHEREIRELEQRVSLRRALLEQKI 849

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            E+   L +   E    + + +++E  IE F   S RL
Sbjct: 850 EEEMLALQNERTERIRSLLERQARE--IEAFDSESMRL 885


>gi|309354987|emb|CAP39769.2| CBR-LIN-5 protein [Caenorhabditis briggsae AF16]
          Length = 808

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 83/292 (28%), Gaps = 11/292 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
               K    +L +      +   KRE   +  +  D     +          ++      
Sbjct: 242 NREQKKQINQLKLTFRYFRNEELKREIAEKRESAEDAELRAQETSAALEAKQQEVDTLRQ 301

Query: 424 YSQAIRDRLQQLFQKY-ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
             +  R+ L+   +   ++E        K      D +   + + +      + S     
Sbjct: 302 QLEKCREILRLEQRHLEVSEAEKETIALKFATASEDLEKCMKEMRRLRDSNEQESDSYRQ 361

Query: 483 REAAL---LLTLINHPAILQEQYQELADIRYD-NNELQKLWSFL--FSDFVEQKYFLPEE 536
           +E  L   L T       L E    L   +     E  +L   +   S    +     + 
Sbjct: 362 KERELTDKLRTAKTENQYLTEHLSNLEMHKTSLQAENDRLKETVEELSLTSSRYKQDADN 421

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
               L +     L + +    R+       +++ I  +++  ++          L  +  
Sbjct: 422 AMTTLGDER-ERLKQTISTLQREHVERMNMSKSTIERIQRELEEERKDKNELSSLLNELN 480

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGR 647
           E  K +       +  +  +      E    +I Q+E +    EGF  +  R
Sbjct: 481 E--KALGTDKETHDQAEGFLSARACLEGAKKRIQQLELELKGKEGFNAVLER 530


>gi|258565639|ref|XP_002583564.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237907265|gb|EEP81666.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1206

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 76/253 (30%), Gaps = 35/253 (13%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + ++ +L+ + +K   +           A     +G  Q+L      + +       + 
Sbjct: 300 LEDLKAKLRVMEKKRTEDREKMKALETIQAEKEKYEGIIQKLQAKYQPQQQEIAHLRRQL 359

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                 + +   +  E    L     D    +++   + +++   K    E   +    R
Sbjct: 360 KEAEARVEDVERLQAEHDSILEMAALDREMAEEVAEAIKAEYEALKLKAEELELEVEVLR 419

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY--------QQALALYKRFRLLSRQKE 596
              + L Q+      +       E     +R+          QQ   L  + + L    E
Sbjct: 420 EENQELGQITSPEEKSSQGWLQMERTNERLREALIRLRDVTQQQESDLKSQIKELEEDLE 479

Query: 597 ------------------------EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
                                   E+++QI  + A+   E+ +       E   QI +++
Sbjct: 480 GFNALKAKYESTREQLMVTESNMEELKQQIEALGAEEMIEELSEKNMQYQE---QISELK 536

Query: 633 SQEAMIEGFGKMS 645
           +    +E   ++S
Sbjct: 537 AAIDDLENLKELS 549


>gi|258576035|ref|XP_002542199.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237902465|gb|EEP76866.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1430

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 69/225 (30%), Gaps = 12/225 (5%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           + L+      ++ R        + + +   R  +  AR   ++    +         + +
Sbjct: 606 EYLQAAIRGMLKRRAFLQDTMDLQDAAQEARLLQAAARGMLKRRAFLQDTMDLQDAAQGA 665

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           +            +I   A+ Q+           + + + L + +               
Sbjct: 666 RLLQAAARG----MIKRRALSQDASDLRNS---ADQDTRLLQAAIRGMLTRHGILRD--- 715

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L +     +  Q   +          TE  +      +  AL  Y R   L R+ +E
Sbjct: 716 MSDLEQNVEAIISTQAVARGFAVRKTKLETENALESALDTWL-ALQSYTRGSALRRKLQE 774

Query: 598 IEKQIA-QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
             KQ+  Q  +  + +  A  +++   V     +++S+E  I  F
Sbjct: 775 QRKQLQAQTPSVIDLQSAARAMALRKAVIATASELKSEENAITLF 819


>gi|188997582|ref|YP_001931833.1| RNA binding metal dependent phosphohydrolase [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188932649|gb|ACD67279.1| RNA binding metal dependent phosphohydrolase [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 564

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 71/211 (33%), Gaps = 17/211 (8%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             ++    +    E        +K    +     ++R+ + +  + +   K   +EA L 
Sbjct: 21  ASKITIEKKLKEKEEEYKKVLERKEEIEKQAITEAERIKKEAEREAERILKEIEKEAKL- 79

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                       +  E+        E Q+    +  + +++K  L  E+ Q+        
Sbjct: 80  ------------KASEIEREALKLKEQQEF--IIEKELLKRKQELENELKQK--REELQN 123

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           L KQL  +        A  E    ++ +  Q+   L +  R L    +E E+++     +
Sbjct: 124 LEKQLLMRESQLEKRLARIEHKEEEITKREQEIHKLEEEIRALENILKEREEKLKNAEQQ 183

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              E   I      E   ++ +   +EA +E
Sbjct: 184 YILELQRIASMTKDEAKAELMKKVEEEAKLE 214


>gi|154300487|ref|XP_001550659.1| predicted protein [Botryotinia fuckeliana B05.10]
 gi|150856592|gb|EDN31784.1| predicted protein [Botryotinia fuckeliana B05.10]
          Length = 508

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 32/135 (23%)

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                + + ++ QVR   +       N  +          L+     L RQ E++  Q++
Sbjct: 66  EDLYNIRRDIELQVRSEQIQFEQP-FNGQEPNNHESNVAHLHHEKEELERQIEDLRAQMS 124

Query: 604 QVTAKGE----------------AEKTAILISILHEVHIQIHQIESQ------------- 634
           Q+    E                 E++  L+  + ++  Q+ +++ +             
Sbjct: 125 QMGEDYESREDFKNTLGQELMHAQEESQELVQEISDLKGQLAKLKCECWDYQKMTEDRMN 184

Query: 635 --EAMIEGFGKMSGR 647
              A+ E FG   G+
Sbjct: 185 EYRALDERFGAFVGK 199


>gi|126323569|ref|XP_001370601.1| PREDICTED: similar to HOMER-3A (flip) protein [Monodelphis
           domestica]
          Length = 743

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 66/233 (28%), Gaps = 26/233 (11%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ---------SSLV 472
             +     ++ Q++ +             +                            L 
Sbjct: 480 EQHLSQFAEKFQEVKEAARLAREKSQDGGELTTPALGLSSHQVPPSPLIGTNGPGDEKLF 539

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQK 530
           + + +  P   E   L  +++  ++ + Q++      +    +   KL + L        
Sbjct: 540 RSQSADGPGPTERERLKKMLSEGSVGEVQWEA----EFFTLQDNNNKLVAALREA----- 590

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               E   ++L    + E  ++L  +V +      +   +        Q+   L    + 
Sbjct: 591 NASVERWKEQL--EAYQEETERLRLRVAELEAQGPSETPSDGGKEGLSQRLEELEMLIKT 648

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ----IHQIESQEAMIE 639
              + + ++ Q   +       +    +  L E+  +      Q++  +  +E
Sbjct: 649 KDEEIQMLKSQKGGLREAESEREREEALQKLQELESRYTEMERQLQGTQRSLE 701


>gi|125952600|sp|Q076A6|MYH1_CANFA RecName: Full=Myosin-1; AltName: Full=Myosin heavy chain 1; AltName:
            Full=Myosin heavy chain 2x; Short=MyHC-2x; AltName:
            Full=Myosin heavy chain, skeletal muscle, adult 1
          Length = 1939

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1565 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQSTLDAEIRSRNDAIRLKKKMEG 1624

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1625 DLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQIHLDDAL-----RGQEDLKEQ--LAM 1677

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1678 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1737

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1738 ISQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1797

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1798 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1829


>gi|124006960|ref|ZP_01691789.1| serine/threonine kinase with GAF domain [Microscilla marina ATCC
           23134]
 gi|123987413|gb|EAY27133.1| serine/threonine kinase with GAF domain [Microscilla marina ATCC
           23134]
          Length = 1131

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 96/299 (32%), Gaps = 26/299 (8%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           ED +     +   A    I             +    S      R E        +   +
Sbjct: 580 EDFEVTFVEHLAEAIAITISSVKSNHKTKSLLQKSRESEKQLQLREEELNKNMQKLIAAQ 639

Query: 417 DQKL-RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           D+   +    +  + ++++  ++   +        ++  ++ ++   +Q  M     + +
Sbjct: 640 DEVENKTAQIEEQKKQIEKSLEEKTEQTEMLLAQEEEMRQNMEELQATQEAMSEKQRELE 699

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK----LWSFLFSDFVEQKY 531
            +KK       +L          ++      +I+  N EL+     +   +      Q+ 
Sbjct: 700 KAKKKLEVNEQVLK------KAYKKARDRELEIKQKNEELKAQEEEIRQNMEELKATQEA 753

Query: 532 FLPEEIHQRLCERGFG----------ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
              ++I      +             E +K+ + ++R            + D +   ++ 
Sbjct: 754 MERKQIEIEGANKKLAANEKVLKLAYEQVKESESEIRKKNEEIVKQSQILEDAKDELERK 813

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE-SQEAMIE 639
               K+     R  ++  ++I Q   +G  +    L +   E+   + +++ +QEA+ E
Sbjct: 814 ---NKKMAANERVLKKAYEKI-QAQEQGLKDTINQLQTTEEELRQNMEELQTTQEALQE 868


>gi|260064069|ref|NP_081065.2| WD repeat-containing protein 65 [Mus musculus]
 gi|300669700|sp|Q9D180|WDR65_MOUSE RecName: Full=WD repeat-containing protein 65
 gi|123211835|emb|CAM16898.1| WD repeat domain 65 [Mus musculus]
 gi|123231542|emb|CAM27667.1| WD repeat domain 65 [Mus musculus]
 gi|123294421|emb|CAM15602.1| WD repeat domain 65 [Mus musculus]
          Length = 1249

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 32/340 (9%), Positives = 100/340 (29%), Gaps = 39/340 (11%)

Query: 306  QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
            ++  L   +   +   D +            +     +             +D       
Sbjct: 706  RVEELKMENEYQLRLKDMNYTEKIKELTDKFIQEMESLKTKNQVLKTEKEKQD---ISHR 762

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
                         L  ++    ++         + + + +   +     ++D        
Sbjct: 763  ERLEELVDKQTRELQDLECCNNQKLLLEYEKYQELQLKSQRMQEEYEKQLRDN---DETK 819

Query: 426  QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
                + L + ++  + E +G     +++ R + ++    +         ++    +  E 
Sbjct: 820  SQALEELTEFYEAKLQEKTGLLEEAQEDVRQQLREFEETKKQIEEDEDREIQDIKTKYER 879

Query: 486  ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L           +++ +    ++ +   ++K +S L  +  E +    E +     +  
Sbjct: 880  KL-----------RDEKESNLRLKGETGIMRKKFSSLQKEIEE-RTNDIELLKS--EQMK 925

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQ 601
               +++ L++ ++         +  I D  +         +       +L  + +E++KQ
Sbjct: 926  LQGIIRSLEKDIQGLKREIQERDETIQDKEKRIYDLKKKNQELEKFKFVLDYKIKELKKQ 985

Query: 602  IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
            I         E          E+ +   QI+  EA +E F
Sbjct: 986  I---------EPREN------EIKVMKEQIQEMEAELERF 1010


>gi|114672278|ref|XP_001138179.1| PREDICTED: ralA binding protein 1 isoform 1 [Pan troglodytes]
          Length = 608

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 53/185 (28%), Gaps = 5/185 (2%)

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY--D 511
            +       S      +L + +   K  +R    LL  + H  +         + R    
Sbjct: 374 KQVMKPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCL-HRDLQGGIKDLSKEERLWEV 432

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
              L  L   L     ++      +    L +    +     + +V +  L         
Sbjct: 433 QRILTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVINILLAQENEILTE 492

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILISILHEVHIQIH 629
            +     +Q L        L RQ EE+E +   +      E E    L   L  + +Q  
Sbjct: 493 QEELLAMEQFLRRQIILEDLQRQNEELEIKNNHLNQAIHEEREAIIELRVQLRLLQMQRA 552

Query: 630 QIESQ 634
           + E Q
Sbjct: 553 KAEQQ 557


>gi|114626409|ref|XP_520229.2| PREDICTED: centrosomal protein 110kDa isoform 7 [Pan troglodytes]
          Length = 1870

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/299 (10%), Positives = 79/299 (26%), Gaps = 29/299 (9%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK----DQ 418
           +R +     +    E           E  +       +        K     I+     +
Sbjct: 429 LRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISE 488

Query: 419 KLRYYYSQAIRDRLQ-------QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
             +    + +  RLQ       +     +           K    +D +     L     
Sbjct: 489 AGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDP 548

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
               +  +   +E  L +    +  +     + L+ I  +  E++ L   L    +    
Sbjct: 549 KHSHMKAQKRGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANE 608

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-------DVRQGYQQALAL 584
            L +++   +   G  E L  +  Q   A                   +V Q   Q   +
Sbjct: 609 ALKKDLEGVIS--GLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIV 666

Query: 585 YKRFRLLSRQKEEIEKQIAQVTA--------KGEAEKTAILISILHEVH-IQIHQIESQ 634
                 + ++  E+E  + +           +G+       +     +   + +Q++ +
Sbjct: 667 AMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEE 725


>gi|87240431|gb|ABD32289.1| tRNA-binding arm; t-snare [Medicago truncatula]
          Length = 992

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 89/290 (30%), Gaps = 14/290 (4%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +            +++ + +   +     E E    N  +   + +        H  D K
Sbjct: 310 NEHQSIATPNESSEVVSDLVSHDNETIVEENERDHANNIETDIKEQHLSSTQNMHDSDSK 369

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           L     + ++  ++ +                + A+  ++    + L++    K   ++ 
Sbjct: 370 LE---LERVKREMKMMEAALQGAARQAQAKADEIAKLMNENEQFKALIEDLKRKSNEAEV 426

Query: 480 PSLREA--ALLLTLINHPAILQEQYQELADIRYDNNELQKLW----SFLFSDFVEQKYFL 533
            SLRE     + TL      L ++   L   +   ++   L       +     E +   
Sbjct: 427 ESLREEYHQRVSTLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIITQVMAEGEELS 486

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY-----KRF 588
            ++  Q    R     ++ L+ + +         E  +  +++       L      K  
Sbjct: 487 KKQATQESTIRKLRAQIRDLEEEKKGLTTKLQVEENKVESIKRDKTATEKLLQETIEKHQ 546

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
             L+ QKE     +A         +         E+  ++ + E +E+M+
Sbjct: 547 NELAVQKEYYTNALAAAKESEALAEARANNEARTELESRLREAEERESML 596


>gi|66736304|gb|AAY54248.1| ankyrin domain protein [Wolbachia pipientis]
          Length = 600

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANI 571
           + +KL   L     ++     E++  RL        E++       +         +A  
Sbjct: 267 DNKKLAKLLIKHGADRSLIKDEDLIDRLNSMCDQPSEVVPSTFSHSKTHNATETPEKAEK 326

Query: 572 VDVRQGYQQALA-----LYKRFRLLSRQKEEIE-------KQIAQVTAKGEAEKTAILIS 619
           V+ R+   + L        K+  LL ++ +++E        ++ +   K +         
Sbjct: 327 VEKRKAKLKELRTQLKDEQKKNELLKQKIQDLESKNTTLNSELEKTKTKTDEVPLEKAQK 386

Query: 620 ILHEVHIQI----HQIESQEAMIE 639
            L E+   I     ++++ E + E
Sbjct: 387 ELTELKSYITGHGARLDTLEKLNE 410


>gi|55980577|ref|YP_143874.1| RNA-biniding protein [Thermus thermophilus HB8]
 gi|55771990|dbj|BAD70431.1| probable RNA-biniding protein [Thermus thermophilus HB8]
          Length = 516

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 76/234 (32%), Gaps = 38/234 (16%)

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL------LLT 490
           +    E              R   G  Q L++    +  L+ +  L EA L      L T
Sbjct: 169 RTLAEEDLLPLLGKPLKEVIRHVDGVGQELLRELARRAGLTPETPLDEAGLGRVYRALKT 228

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR---------- 540
           L+  P++  E  +EL   R+   E + L   L      +   L   +             
Sbjct: 229 LVEDPSLRTELSEELRR-RWAEEEKEALRKPLLEALDREIRTLKARLGDYQEALERLEEA 287

Query: 541 -LCERGFGELLKQL------DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
               R    LL +L        +V   G      E  +       + A  LY R     R
Sbjct: 288 EALRRRADLLLARLKEVPKGAEKVVLEGFDGKPVEIPLDPALSPQENARKLYDRA----R 343

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
           + EE+ ++   +  K E        + + E+  +  ++ + +  +EG   ++ R
Sbjct: 344 RLEELAEKALDLIPKTE--------ARIRELEAEKERLRTLD--LEGLLALAQR 387


>gi|24412747|emb|CAD44631.1| disrupted in schizophrenia 1 [Homo sapiens]
          Length = 678

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 95/354 (26%), Gaps = 45/354 (12%)

Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390
              + DL             +      DP S        A       S       W    
Sbjct: 271 TRVSADLAQAARNSSRPERDMHSLPDMDPGSSSSLDPSLAGCGGDGSSGSGDAHSWDTLL 330

Query: 391 ENRSFNTPDERAELEIHLKNCINHIK------DQKLRYYY--SQAIRDRLQQLFQKYITE 442
                   D        ++     +K      D      Y  ++ ++ RL+ L Q+ I+ 
Sbjct: 331 RKWEPVLRDCLLRNRRQMEVISLRLKLQKLQEDAVENDDYDKAETLQQRLEDLEQEKISL 390

Query: 443 HSGYGRYWKKNARH----RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL--------- 489
           H          +        Q   + R   +    G  +  P   E  LL          
Sbjct: 391 HFQLPSRQPALSSFLGHLAAQVQAALRRGATQQASGDDTHTPLRMEPRLLEPTAQDSLHV 450

Query: 490 ------TLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYF--LPEEIHQR 540
                  L+     LQ++ + L    +      Q+L   +     + ++       +  +
Sbjct: 451 SITRRDWLLQEKQQLQKEIEALQARMFVLEAKDQQLRREIEEQEQQLQWQGCDLTPLVGQ 510

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL---------- 590
           L      E+ K L   +  AG      E     +R   ++  +L    +           
Sbjct: 511 LSLGQLQEVSKALQDTLASAGQIPFHAE-PPETIRSLQERIKSLNLSLKEITTKVCMSEK 569

Query: 591 ----LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
               L ++  +IE Q+  +        +        ++  +I  + S+   +EG
Sbjct: 570 FCSTLRKKVNDIETQLPALLEAKMHAISGNHFWTAKDLTEEIRSLTSEREGLEG 623


>gi|114319988|ref|YP_741671.1| hypothetical protein Mlg_0827 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226382|gb|ABI56181.1| conserved hypothetical protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1137

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 32/190 (16%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWK------KNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
           +R RL +L Q +    S   R  +      +  R R ++  +++ +        L  +  
Sbjct: 469 VRQRLDELEQAWHQARSLQQRRQEADQLHAQRGRARTEQAEAEQALHRHAAALGLDAELP 528

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           L     +  L  H    ++Q  + A +     EL  L   L            EE  + L
Sbjct: 529 LAFDRAVRLLSRHQEAREQQAAQEAVLDRQAQELDTLRDTLHHFLATWHTAPREERSEAL 588

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                                      A + D+RQ  + A    ++    +R   E+E+Q
Sbjct: 589 --------------------------GAALDDLRQRCEAAERARQQADNATRLIRELERQ 622

Query: 602 IAQVTAKGEA 611
           +     + + 
Sbjct: 623 LRDTRRQLDQ 632


>gi|322832247|ref|YP_004212274.1| chromosome segregation and condensation protein MukB domain protein
           [Rahnella sp. Y9602]
 gi|321167448|gb|ADW73147.1| chromosome segregation and condensation protein MukB domain protein
           [Rahnella sp. Y9602]
          Length = 1482

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 64/215 (29%), Gaps = 17/215 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              ++ +L    Q    + +   +Y +        +   Q    S        +    +E
Sbjct: 392 VDELKSQLADYQQALDVQQTRAIQYQQALQAIERARDLCQIPDLSIQNSEAWLETFQSKE 451

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                 L+          Q+++     +N+ +  +  +     E       +  + L   
Sbjct: 452 QEATEILLM-------LEQKMSVASAAHNQFETAYQLVVKIAGEVSRSDAWQTARELLRD 504

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF------RLLSRQKEEI 598
              +  +    +V    +  +  E  + + +   +Q     KR         L   + E+
Sbjct: 505 WSSQQHQ--AERVEPLRMRLSELEGRLREQQDAERQLQEFCKRTGQDVHPEDLDEMQREL 562

Query: 599 EKQIAQVTAKGEA--EKTAILISILHEVHIQIHQI 631
           E QI ++        E+   +   L  V  +I ++
Sbjct: 563 EVQIEELQGVVSQAGERRMEMRQELERVQSRIREL 597


>gi|307704523|ref|ZP_07641431.1| conserved hypothetical protein [Streptococcus mitis SK597]
 gi|307621936|gb|EFO00965.1| conserved hypothetical protein [Streptococcus mitis SK597]
          Length = 1599

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 14/105 (13%)

Query: 14  HIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72
            + I  +     ++  R+   + +  YWA    HD    SF  +  K  ++ +S ++ GD
Sbjct: 10  SLDILEVARSLGMEMKRK---SHREYYWA---EHD----SFKIDTVKNTWHWYSQNIFGD 59

Query: 73  HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117
            ++ +  +   S+ E++  L    G   P   P  E+++     L
Sbjct: 60  TINLVQQMRNVSYKEAMVFL--ETG-SFPEAKPVEEERKPFNYTL 101


>gi|301122173|ref|XP_002908813.1| kinesin-like protein [Phytophthora infestans T30-4]
 gi|262099575|gb|EEY57627.1| kinesin-like protein [Phytophthora infestans T30-4]
          Length = 1158

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/354 (9%), Positives = 99/354 (27%), Gaps = 24/354 (6%)

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           L  A              E Q+R+L      I    + +           + +       
Sbjct: 99  LDTATQACRKLEQQQDELETQVRVLRATESDIRHKMEREMEEKVFLLSDQEELQHEHELA 158

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
                  +   +          K      + E+    + +    +++   +   + +  E
Sbjct: 159 TERFRTEIMDLK--SELYALQQKYEDATTVSETFSNNESMATTRSQSEDDDEGYDSSFNE 216

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ------ 459
             L++   H +D+  R    +++R+ ++ L      E         +  + R+       
Sbjct: 217 NSLRHSTVHERDEISREVLIESLREEIEALSSTVQDETEARAAAEAEMQQLRESLAHMEA 276

Query: 460 -KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
            +     +    + K +  +    +   L  +L+   + +         I + N      
Sbjct: 277 MEAEMTEMTDELIGKSQEIRTRDEQIEELRESLLKLQSEMATAND--GGIAFTNERENMQ 334

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
                    E K      +   L           L    R            + ++++  
Sbjct: 335 RQL------EDKDKEITALKDELDT--LKSQYDDLAESERQLKTELEHENEAVDELKE-- 384

Query: 579 QQALALYKRFRLLSRQKEEIEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQ 630
            Q   L +      +++ E+E+++   +       ++   L S+  ++  Q+ +
Sbjct: 385 -QVETLTRNLEESKQERSELERKLQFGKGEISQNRKEVEELNSMNLDLQKQLDE 437


>gi|251789899|ref|YP_003004620.1| cell division protein MukB [Dickeya zeae Ech1591]
 gi|247538520|gb|ACT07141.1| chromosome segregation and condensation protein MukB domain protein
           [Dickeya zeae Ech1591]
          Length = 1478

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/275 (10%), Positives = 82/275 (29%), Gaps = 18/275 (6%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +        +L  +S    D+    +  +   N        +  ++     +++   R  
Sbjct: 306 QNRHVEMARELQEQSGAESDLETDYQAASDHLNLVQTAMRQQEKIERYNADLEELSYRLE 365

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               + +  +   ++         +   +          +  + Q+  ++   +++   R
Sbjct: 366 EQNEVVEEARDQLEENEARADAAEQEVDELKSQLADYQQALDVQQTRAIQYNQAQQALER 425

Query: 484 EAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
             +L       P +  +   E L   +    E  +L   L            +  H    
Sbjct: 426 ARSLCQV----PELTPDNADEWLDSFQAKEQEATELLLMLEQKLSVADAANSQFEHAY-- 479

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY--QQALALYKRFRLLS---RQKEE 597
                +L+ ++   V  +  W    +       Q Y  +Q   L  R   L    R++++
Sbjct: 480 -----QLVCRIAGAVSRSEAWDVARDLLRDSSSQRYLAEQVQPLRMRLSELEQRRREQQD 534

Query: 598 IEKQIAQVTAKGEAEKTAILISIL-HEVHIQIHQI 631
            E+ + +   +   +     +  L  E+  +I  +
Sbjct: 535 AERLLQEFVKRSGQDYQPEDLDDLQQELEARIEDL 569



 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/278 (10%), Positives = 75/278 (26%), Gaps = 15/278 (5%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D           +  + +   +       E  +      +E  E             D  
Sbjct: 329 DYQAASDHLNLVQTAMRQQEKIERYNADLEELSYRLEEQNEVVEEARDQLEENEARADAA 388

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +      ++ +L    Q    + +   +Y +        +   Q    +     +    
Sbjct: 389 EQE--VDELKSQLADYQQALDVQQTRAIQYNQAQQALERARSLCQVPELTPDNADEWLDS 446

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIH 538
              +E      L+          Q+L+     N++ +  +  +        +    +   
Sbjct: 447 FQAKEQEATELLLM-------LEQKLSVADAANSQFEHAYQLVCRIAGAVSRSEAWDVAR 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR---LLSRQK 595
             L +      L +  + +R              D  +  Q+ +    +      L   +
Sbjct: 500 DLLRDSSSQRYLAEQVQPLRMRLSELEQRRREQQDAERLLQEFVKRSGQDYQPEDLDDLQ 559

Query: 596 EEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQI 631
           +E+E +I  ++ +     E    L   L ++  +I Q+
Sbjct: 560 QELEARIEDLSVRVSEAGEHRLALRQELEQIQQRIVQL 597


>gi|118099534|ref|XP_415578.2| PREDICTED: similar to myosin heavy chain [Gallus gallus]
          Length = 1940

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/267 (8%), Positives = 79/267 (29%), Gaps = 15/267 (5%)

Query: 376  VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             +    +D     + E       +    ++         I+ +       + +   L ++
Sbjct: 1571 NQVKSDIDRKIAEKDEEIDQLKRNHLRVVDSMQSTLDAEIRSRNEALRLKKKMEGDLNEI 1630

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
              +    +       K     +     +Q  +  +L       +  L+E   +  +    
Sbjct: 1631 EIQLSHANRQAAEAQKNLRNTQGVLKDTQIHLDDAL-----RSQEDLKEQ--VAMVERRA 1683

Query: 496  AILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             +LQ + +EL          +K+    L       +    +       ++     + Q+ 
Sbjct: 1684 NLLQAEIEELRAALEQTERSRKVAEQELLDASERVQLLHTQNTSLINTKKKLESDISQIQ 1743

Query: 555  RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKGE 610
             ++ D    +   E                 K+ +     L R K+ +++ +  +  + +
Sbjct: 1744 SEMEDTIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLDQTVKDLQHRLD 1803

Query: 611  AEKTAIL---ISILHEVHIQIHQIESQ 634
              +   L      + ++  ++ ++E +
Sbjct: 1804 EAEQLALKGGKKQIQKLEARVRELEGE 1830



 Score = 37.6 bits (85), Expect = 6.2,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 82/277 (29%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  +L   +    +       +      ELE   K     ++D +      
Sbjct: 1353 EEEQEAKGELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1412

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1413 NSKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQKNFDKILSEWKQKYEETQAEL 1472

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+  S L     E         
Sbjct: 1473 EASQKESRSLSTELFKMKNAYEESLDHLETLKRENKNLQQEISDLTEQIAEGGK------ 1526

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +A + +     +       R   +  +  +
Sbjct: 1527 -----------AIHELEKVKKQIEQEKSELQAALEEAEASLEHEEGKILR---VQLELNQ 1572

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++  I +  A+ + E   +  + L  V      ++++
Sbjct: 1573 VKSDIDRKIAEKDEEIDQLKRNHLRVVDSMQSTLDAE 1609


>gi|61742829|ref|NP_001012977.1| disrupted in schizophrenia 1 protein isoform S [Homo sapiens]
 gi|55666346|emb|CAH70956.1| disrupted in schizophrenia 1 [Homo sapiens]
 gi|55958941|emb|CAI17206.1| disrupted in schizophrenia 1 [Homo sapiens]
 gi|55959789|emb|CAI15679.1| disrupted in schizophrenia 1 [Homo sapiens]
 gi|56204791|emb|CAI21888.1| disrupted in schizophrenia 1 [Homo sapiens]
          Length = 678

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 95/354 (26%), Gaps = 45/354 (12%)

Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390
              + DL             +      DP S        A       S       W    
Sbjct: 271 TRVSADLAQAARNSSRPERDMHSLPDMDPGSSSSLDPSLAGCGGDGSSGSGDAHSWDTLL 330

Query: 391 ENRSFNTPDERAELEIHLKNCINHIK------DQKLRYYY--SQAIRDRLQQLFQKYITE 442
                   D        ++     +K      D      Y  ++ ++ RL+ L Q+ I+ 
Sbjct: 331 RKWEPVLRDCLLRNRRQMEVISLRLKLQKLQEDAVENDDYDKAETLQQRLEDLEQEKISL 390

Query: 443 HSGYGRYWKKNARH----RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL--------- 489
           H          +        Q   + R   +    G  +  P   E  LL          
Sbjct: 391 HFQLPSRQPALSSFLGHLAAQVQAALRRGATQQASGDDTHTPLRMEPRLLEPTAQDSLHV 450

Query: 490 ------TLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYF--LPEEIHQR 540
                  L+     LQ++ + L    +      Q+L   +     + ++       +  +
Sbjct: 451 SITRRDWLLQEKQQLQKEIEALQARMFVLEAKDQQLRREIEEQEQQLQWQGCDLTPLVGQ 510

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL---------- 590
           L      E+ K L   +  AG      E     +R   ++  +L    +           
Sbjct: 511 LSLGQLQEVSKALQDTLASAGQIPFHAE-PPETIRSLQERIKSLNLSLKEITTKVCMSEK 569

Query: 591 ----LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
               L ++  +IE Q+  +        +        ++  +I  + S+   +EG
Sbjct: 570 FCSTLRKKVNDIETQLPALLEAKMHAISGNHFWTAKDLTEEIRSLTSEREGLEG 623


>gi|77404182|ref|NP_001029225.1| prelamin-A/C [Bos taurus]
 gi|74354719|gb|AAI02843.1| Lamin A/C [Bos taurus]
 gi|296489648|gb|DAA31761.1| lamin A/C [Bos taurus]
          Length = 572

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 101/319 (31%), Gaps = 34/319 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNSKKEGDLMAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    +L+K +S    +  +              E     + +  L  Q+     
Sbjct: 255 QVEQYK---KDLEKTYSAKLDNARQSAERNSNLAGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620
             A  EA + D+     +     +R         + E+++A++ A+ +   ++   L+ I
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRL------LADKEREMAEMRARMQQQLDEYQELLDI 365

Query: 621 LHEVHIQIHQ----IESQE 635
              + ++IH     +E +E
Sbjct: 366 KLALDMEIHAYRKLLEGEE 384


>gi|45383005|ref|NP_989918.1| myosin-7B [Gallus gallus]
 gi|17907763|dbj|BAB79445.1| myosin heavy chain [Gallus gallus]
          Length = 1941

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 66/215 (30%), Gaps = 9/215 (4%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             +R +++    +   + S   R   +  +   Q     + +Q  L   +        +AA
Sbjct: 1621 RLRKKMEGDLNEMEIQLSHANRQAAEFQKLGRQLQAQIKDLQIELDDTQRQNDDLKEQAA 1680

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
             L     +  +L E  +  A +       +     L            +       ++  
Sbjct: 1681 ALER--RNNLLLAEVEELRAALEQAERSRKLAEQELLEATERVNLLHSQNTGLINQKKKL 1738

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQI 602
               + QL  +V DA       E                 K+ +     L R K+ +E+ I
Sbjct: 1739 ETDISQLSSEVEDAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTI 1798

Query: 603  AQVTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              +  + +  +   L      + ++  ++ ++E +
Sbjct: 1799 KDLQMRLDEAEQIALKGGKKQIQKLEARVRELEGE 1833


>gi|113474707|ref|YP_720768.1| chromosome segregation ATPase-like protein [Trichodesmium
           erythraeum IMS101]
 gi|110165755|gb|ABG50295.1| Chromosome segregation ATPase-like protein [Trichodesmium
           erythraeum IMS101]
          Length = 666

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 75/250 (30%), Gaps = 26/250 (10%)

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIR--DRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
            +    ++     +K++KL+    Q +    RL    +          +   +      +
Sbjct: 191 EQRLQDMQAVTPRLKEEKLQEINKQRVSLEKRLGDAKKLTPELRDKKLQAIAEQKITLQE 250

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
           +  S + +   L           RE +L   L +   ++    Q L              
Sbjct: 251 RLQSAKSLTPILRDKNELALQQQRE-SLKQRLKDAQELVPVFEQRLTK-----------R 298

Query: 520 SFLFS---DFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANI 571
             L        +      +E  Q L           ++  Q            +T     
Sbjct: 299 QKLLDDGAISQDNLLQTEQEFRQNLQSIAQIKTELKQVEVQEAETAEKYLQNFSTINEIE 358

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL--ISILHEVHIQIH 629
             ++    + +   +R+        EIE Q+  + ++        L  ++ ++E+ +Q+ 
Sbjct: 359 DKLKDLEVEEVETNQRYLDNVNTIREIEGQLQGLDSQTTETSKQFLDNLNQINEIKVQLQ 418

Query: 630 Q--IESQEAM 637
           +  ++  EAM
Sbjct: 419 EVKLQETEAM 428


>gi|332245875|ref|XP_003272077.1| PREDICTED: tripartite motif-containing protein 39-like isoform 3
           [Nomascus leucogenys]
          Length = 503

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 69/187 (36%), Gaps = 2/187 (1%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
             + R       +   S     ++   +   I   ++  + ++ L+   Y++ E   L  
Sbjct: 70  RKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYEDQEAVCLIC 129

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ- 579
            +            ++  Q   E+   + L+ L++++++     ++ E    ++++  + 
Sbjct: 130 AISHTHRAHTVVPLDDATQEYKEK-LQKCLEPLEQKLQEITRCKSSEEKKPGELKRLVES 188

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +   + + F  L R+ +E ++ +     + E +    L      +  +   +    A +E
Sbjct: 189 RRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKRRDLAHLAAEVE 248

Query: 640 GFGKMSG 646
           G    SG
Sbjct: 249 GKCLQSG 255


>gi|332159251|ref|YP_004424530.1| chromosome segregation protein [Pyrococcus sp. NA2]
 gi|331034714|gb|AEC52526.1| chromosome segregation protein [Pyrococcus sp. NA2]
          Length = 879

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 90/269 (33%), Gaps = 16/269 (5%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
            E E +      ++  +   +      I+++K +    + I   L  L +K         
Sbjct: 244 TELELKIEKLNSKKNGIYGKITQLEKGIEERKEKIKELEEIVKILPDLEEKEREYQRLLK 303

Query: 448 RYWKKNARHRDQKGPSQRLMQ-SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
              +  +     +    RL      ++ KL       E   +  +      ++E  +EL 
Sbjct: 304 FKERYTSEESRLEKIINRLKGIKEELEDKLKNAKEKAER--IRYIQRQLEGIEESMKELE 361

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-----RLCERGFGELLKQLDRQVRDAG 561
                  E++++   L           PEE+ +     R+        + +++ ++ +  
Sbjct: 362 QFASKFEEVEQMRRQLTRLKQYLGGLRPEEVKELLNSKRIEREEIKVKINEINTKIGEVS 421

Query: 562 LWSATTEANIVDVRQG------YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
                 +  I ++R+         + L    + +L+++  +EI++   ++          
Sbjct: 422 QGIRERKKAIDELRRAKGKCPVCGRELTEEHKAKLITKYSKEIKRLEEELEIA--KTNKE 479

Query: 616 ILISILHEVHIQIHQIESQEAMIEGFGKM 644
            L   L E+   I ++ S   + E   ++
Sbjct: 480 ELEKKLRELENDIAKLSSLSKVAEQVMEL 508


>gi|316978037|gb|EFV61064.1| putative myosin head (motor domain) [Trichinella spiralis]
          Length = 1545

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/288 (10%), Positives = 75/288 (26%), Gaps = 37/288 (12%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ-----LFQK 438
              W+ + E       +E  + +  L   +  ++++           ++L+Q     L   
Sbjct: 1250 QQWRAKYEQEGLRKTEELEDAKKKLVIKLQSMQEEIEAANLKANSAEKLRQRVVAELEDA 1309

Query: 439  YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
                    G       + R          Q                 A++  L      L
Sbjct: 1310 VTDSERANGYAQSLERKQRGFDKILDEWKQKCDDLSAELDASQRENKAVVTELYKLRQAL 1369

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQK-------------YFLPEEIHQRLCERG 545
            +E       +R +N  L +    +     E                   EE+   L E  
Sbjct: 1370 EEATDREEAVRRENKMLAQEIQEINDQLGEGGKNYHEVQKTRRRLEMEKEELQNALDEAE 1429

Query: 546  --FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL------------- 590
                    ++ R   +        E  + +  + ++     + +                
Sbjct: 1430 SALETEENKVMRHQIELVQVKQEVEKRLQEKEEEFENVRRNHAKALESVQATLEAESRGR 1489

Query: 591  --LSRQKEEIEKQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQ 634
              L + K+++E  I  +    +           ++     QI ++++Q
Sbjct: 1490 MELMKAKKKLESDINDLEIALDHAAKGNVEAQRLIKRYQEQIRELQAQ 1537



 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 88/262 (33%), Gaps = 23/262 (8%)

Query: 387  KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
              E      +      + E  +    + ++D++      Q +   LQ    +   E +  
Sbjct: 969  MEEILKLKQDLEMNVKKKEDEISVLNHTLEDEQSTAMRLQKVVKDLQVRVAEVEEELNME 1028

Query: 447  GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
             +   K  R R +       +Q  L +   + +  +              + +++  E+A
Sbjct: 1029 RQNRNKTERRRKELQDEMDELQQQLEEAGGASQAQM-------------ELNKKREAEIA 1075

Query: 507  DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC---------ERGFGELLKQLDRQV 557
             ++ +  E         S   ++      E++++L          E+G   L K+++   
Sbjct: 1076 KLKREQEEAALAHEAQISSLKKKHTDAVAELNEQLNALQNSRIKLEKGKSVLQKEIEELH 1135

Query: 558  RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
                  + +   +   V+    Q + L        RQ +E+E Q +++  +   +    L
Sbjct: 1136 LAVDSETKSKAVHEKQVKSLEAQLVDLQTNHEETLRQLKELELQKSRLVNE-STDLQKQL 1194

Query: 618  ISILHEVHIQIHQIESQEAMIE 639
                 +++  +   ++  A +E
Sbjct: 1195 EEQDVQLNNLLRAKQTLSAELE 1216


>gi|313680022|ref|YP_004057761.1| smc domain protein [Oceanithermus profundus DSM 14977]
 gi|313152737|gb|ADR36588.1| SMC domain protein [Oceanithermus profundus DSM 14977]
          Length = 1080

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 66/219 (30%), Gaps = 21/219 (9%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           + +RL++L  +         R  +  A        ++          +  +  + R A L
Sbjct: 670 LEERLRRLSAERDAAARALERLPEPGALPEPPAPVAEPDAGPLEAARRRLEVLNARRAEL 729

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              L       +E  +++A+ R      ++    L +     +    E            
Sbjct: 730 AARL----EAWKEHDRDVANHRLALERYEERQERLAALRGRAEGLERERGRLEERLAEVE 785

Query: 548 ELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             L +L R++   GL        A   + R+   +  A  +R   ++ + EE    +A+ 
Sbjct: 786 ARLGELTRELEALGLEGLRVRVRALEEEAREVKARQQAWLERLAAIAGETEEARLLLARR 845

Query: 606 TAKGEA---------------EKTAILISILHEVHIQIH 629
            A  E                     L   L E+  ++ 
Sbjct: 846 EATLEEVLREGAELPPGDHVEGTVRKLQLRLREIERELE 884


>gi|307709250|ref|ZP_07645708.1| ABC transporter family protein [Streptococcus mitis SK564]
 gi|307619833|gb|EFN98951.1| ABC transporter family protein [Streptococcus mitis SK564]
          Length = 633

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 56/158 (35%), Gaps = 15/158 (9%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +             +    + +
Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E+  Q ++         A+   +    ++  ++   L ++   L  + EE+E Q  
Sbjct: 532 KAEVEM-TQAEKASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQ-- 588

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI--ESQEAMIE 639
              A  E          L E+  ++ +I    +EAM+E
Sbjct: 589 -SQAISEQMLETNDAGKLMELQAELDKICHRQEEAMLE 625


>gi|297271927|ref|XP_002800337.1| PREDICTED: myosin-4-like isoform 2 [Macaca mulatta]
          Length = 1945

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 80/277 (28%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +   +   +    +       +      ELE   K     ++D +      
Sbjct: 1358 EEEQEAKAELQRGMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1417

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              +    +  + RLQ   +  + +           + + R+         Q         
Sbjct: 1418 NSKCASLEKTKQRLQNEVEDLMIDVERSNAACIALDKKQRNFDKILAEWKQKYEETQAEL 1477

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            +       +L   L       +E    L  ++ +N  LQ+  S L     E         
Sbjct: 1478 EASQKESRSLSTELFKVKNAYEESLDHLETLKRENKNLQQEISDLTEHIAEGGKH----- 1532

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +A++ +     +       R   +  +  +
Sbjct: 1533 ------------IHELEKVKKQLDHEKSELQASLEEAEASLEHEEGKILR---IQLELNQ 1577

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1578 VKSEIDRRIAEKDEELDQLKRNHLRVVESMQSTLDAE 1614


>gi|241958308|ref|XP_002421873.1| structural maintenance of chromosomes protein, putative [Candida
           dubliniensis CD36]
 gi|223645218|emb|CAX39817.1| structural maintenance of chromosomes protein, putative [Candida
           dubliniensis CD36]
          Length = 1073

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 78/232 (33%), Gaps = 20/232 (8%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
           + +   +D   +   SQ + ++++ +  +    H    +  ++  +  +    SQ +   
Sbjct: 179 HLLVMHEDLISKDNESQQLGNKIKDIEGRLAKLHEDRSKLEEEARKLEEYDKKSQEVDNH 238

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
            L+      +    +   L        +  E   +L   + +   L+            +
Sbjct: 239 RLLIPYAKYQDLKNQRTHLK------RLRDEAKHKLRTFQANFKPLEN------DITNAE 286

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           K    E       +    + L ++++        +        +++    +A    K  +
Sbjct: 287 KSINDESEKYSELKNSLKQTLNEINKHKNTQKQVTTEISELRANLKSYQTRAEQKKKELQ 346

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISIL-------HEVHIQIHQIESQ 634
            + ++  E++++  +   + + E+   L S L        ++  Q+ ++ SQ
Sbjct: 347 EIKKEIAELQEK-QKGLPQVDQEEIQNLTSELTSKRHELRDLEEQLQEVNSQ 397


>gi|195128847|ref|XP_002008871.1| GI11572 [Drosophila mojavensis]
 gi|193920480|gb|EDW19347.1| GI11572 [Drosophila mojavensis]
          Length = 944

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 79/270 (29%), Gaps = 20/270 (7%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
           + E +           +         +A             K   +        ++++ Q
Sbjct: 357 MEEHIKAQQERINMHLQLMMSQPIVAQATTTDTQPTPTQSEKVPAVSMAAKDESKEQMLQ 416

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSKKPSLREAALLLTLI 492
           L            R  +  A  R        L++SS  K    L +  +  E       +
Sbjct: 417 LETDVKRHLLEKQRLEELVANMRVNYEQEIELIESSYKKQLKVLEQHLTAVEE---RLKL 473

Query: 493 NHPAILQEQYQELADI----RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR--LCERGF 546
            +  + +    +L  +        + L++                 E I Q   L +   
Sbjct: 474 ENSEMKEYYADKLEKLKSDYELQVSSLKQDHEDDLRALRSSHDADMERIRQAKMLEQATV 533

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            +    L+     +         ++ ++R+G        ++  L  R+  + E+++    
Sbjct: 534 RDHGSYLETLRLASN--------DLQELREGLSTTKEREQQLELRERRLADAERRLKIDE 585

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEA 636
              + EK   L+ ++  + +Q+ ++    A
Sbjct: 586 EGADQEK-RRLMELVSTLELQLERLSKDTA 614


>gi|73951807|ref|XP_536227.2| PREDICTED: similar to Myosin-10 (Myosin heavy chain, nonmuscle IIb)
            (Nonmuscle myosin heavy chain IIb) (NMHC II-b) (Cellular
            myosin heavy chain, type B) (Nonmuscle myosin heavy
            chain-B) (NMMHC-B) [Canis familiaris]
          Length = 1337

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 520  SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
                           +E+ Q L +    +L ++L   ++      A  EA+     +  +
Sbjct: 887  QQALEQCASSYREDLQELKQ-LSDHEREKLQQELQETIQQNQAMKAQLEASHQRALRMLE 945

Query: 580  QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            +A     +     R K+E    +         E  A+      E+  ++ ++E+Q+A++
Sbjct: 946  KAKNQELKATE-ERLKKESSHSLQIQHQAHRLELQALEEKARQELQGELERMEAQQALL 1003


>gi|325967938|ref|YP_004244130.1| chemotaxis sensory transducer [Vulcanisaeta moutnovskia 768-28]
 gi|323707141|gb|ADY00628.1| chemotaxis sensory transducer [Vulcanisaeta moutnovskia 768-28]
          Length = 486

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 72/188 (38%), Gaps = 9/188 (4%)

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT---LINHPAILQEQYQELADIR 509
           N  + +     + L    L   +     S+RE ++      L +    L+E+  +LA++ 
Sbjct: 167 NRVYNEVLNREKELESKLLDISRRESDVSVREKSIEEIRQRLESDRKALEEEKAKLAEMS 226

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQR----LCERGFGELLKQLDRQVRDAGLWSA 565
                L  L + L S   E        + +       E    +   +L  + +   + + 
Sbjct: 227 NVMASLITLSNQLTSRLSELDSREKALLEREKALGERETKLRDWEVELKSREQRLEMEAV 286

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
             +A    +R+  ++   + +R   LS+++ E+++   ++  +        L + L +  
Sbjct: 287 RIDAENARLRELEKKEQEVKERLEQLSQREAELKELEKKLNER--QNALNKLEAELKDKE 344

Query: 626 IQIHQIES 633
            +++ +E+
Sbjct: 345 SRLNSLEN 352


>gi|309389853|gb|ADO77733.1| UvrD/REP helicase [Halanaerobium praevalens DSM 2228]
          Length = 741

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 65/216 (30%), Gaps = 12/216 (5%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           Q L +                 +  +       L     + G  SK   L E  ++L  +
Sbjct: 385 QALRKALEDNKETTAILMPTGWQLEELAREINNLGGEFQLAGSSSKDVFLTELEVVLKFL 444

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
             PA   E  + L    +   +L  L   L     E+           L    F    K+
Sbjct: 445 TSPA-ASENLKLLFVEIFQKEDLD-LVQLLEDLLAEKDNQDLIFPLSGLNRDNFRLEFKK 502

Query: 553 -------LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
                      V+  G   A+ E    ++     + L L  +   L++    +  +  ++
Sbjct: 503 RAAFEPLFKSLVQLQGWLEASMELPPDELVLFLAERLKLSGKKLALAQ---NLALEFGRL 559

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
             +    +   L + L E+  +I Q       +EGF
Sbjct: 560 LNENPGWRLDQLTAELPEIRDRIKQFAETLTEMEGF 595


>gi|293351279|ref|XP_573030.3| PREDICTED: myosin, heavy chain 11, smooth muscle [Rattus norvegicus]
          Length = 1895

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 77/213 (36%), Gaps = 11/213 (5%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             +A   R QQL    + + +       +N +        + L+Q +  + ++  K    +
Sbjct: 810  RKAFTKRQQQLTAMKVIQRNCAAYLKLRNWQWWRLFTKVKPLLQVTRQEEEMQAKEEEMQ 869

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                          Q+   EL ++   + +L +  + L      +     E    R+   
Sbjct: 870  KI--------KERQQKAESELKELEQRHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLA 921

Query: 545  GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-QQALALYKRFRLLSRQKEEIEKQIA 603
               + L+++  ++             +   R+   QQ L  + R +   + ++E+EK   
Sbjct: 922  AKKQELEEILHEMEARLEEEEDRSQQLQAERKKMAQQMLVRHVRLKKEEKSRQELEKLKR 981

Query: 604  QVTAKGEA--EKTAILISILHEVHIQIHQIESQ 634
            ++        E+ A L + + E+ +Q+ + E +
Sbjct: 982  KLEGDASDFHEQIADLQAQIAELKMQLAKKEEE 1014



 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 8/111 (7%)

Query: 527  VEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-- 582
             E+     E++ ++L      F E +  L  Q+ +  +  A  E  +        + +  
Sbjct: 969  EEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEITQ 1028

Query: 583  --ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIH 629
                 K+ R L     ++++ +    A     +     L   L  +  ++ 
Sbjct: 1029 KNNALKKIRELEGHVSDLQEDLDSERAARNKAEKQKRDLGEELEALKTELE 1079


>gi|258592595|emb|CBE68904.1| conserved protein of unknown function [NC10 bacterium 'Dutch
           sediment']
          Length = 521

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 14/130 (10%)

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            L    VE K    E + +R+      E   ++     +A   +   +A++    +  +Q
Sbjct: 24  LLRKQVVESKVAEAETLAKRILTEAEKEAETKVRGAELEAKELAIQAKADLERETKSRRQ 83

Query: 581 ALA-----LYKRFRLLSRQKEEIEKQIAQVTAKGE---------AEKTAILISILHEVHI 626
            +      L ++  +L R+ E++E++  ++ ++           AEK      ++ +   
Sbjct: 84  EIDSAQRQLNQKEEVLERRLEQLERRDRELDSQARDLGNREQAAAEKETRCAQLMDDAQR 143

Query: 627 QIHQIESQEA 636
           Q+ +I    A
Sbjct: 144 QLERISGLTA 153


>gi|227499105|ref|ZP_03929240.1| ATPase [Acidaminococcus sp. D21]
 gi|226904552|gb|EEH90470.1| ATPase [Acidaminococcus sp. D21]
          Length = 850

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 47/134 (35%), Gaps = 5/134 (3%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-GELLKQLDRQVRDAGLWSA 565
            I   +    +L + + S   E        +  ++ E+    E  KQ   ++        
Sbjct: 385 AIDLVDEAAARLRTEIDSMPTELDESRRRMLQLQIEEQALSKEEDKQSADRLEKIREELK 444

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL----ISIL 621
             +A    +   +Q+  A   + R + +  ++++K +       +  K A L    +  L
Sbjct: 445 EMKAKNDKMTARWQEEKAGIAKVRQVKKAIDQVKKDMETAEHDYDLNKLAELKYGRLPEL 504

Query: 622 HEVHIQIHQIESQE 635
            +   ++ + E  E
Sbjct: 505 QKQLQELEKEEHAE 518


>gi|212537539|ref|XP_002148925.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
 gi|210068667|gb|EEA22758.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
          Length = 816

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 73/242 (30%), Gaps = 9/242 (3%)

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
              +    L     +   ++L ++ +  +     Y          ++     +R   S  
Sbjct: 280 TQQLPLPNLHEAAQKLAAEKLAKMPRNELYNQQQYYGTTPSVKSRQNFSRRLRRRTSSDG 339

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS----DFV 527
              +     S R    + +L +    + E+ +            + + + +       + 
Sbjct: 340 DVSEADWLRSERIRHQMSSLQSRVNAIDEKKKTKDRADLMEIARKNVHAAIQDMDEKVYA 399

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           +     P  + +   E+      ++ + +  + G+ +   +  +            +   
Sbjct: 400 DTGRPSPS-MQREWEEKAQLRAKQESETRSTNVGMIAVGGDKYMDQAEVEAIARARIQPT 458

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQEAMIEGFGKMS 645
              +  + EE  ++  +V  K E E+           E  I+  + +  EA+ +     S
Sbjct: 459 LDEIDDRVEE--QRAREVEEKLEQERKQRRVETDRAREEQIRAEETKQDEAVQKNGKGSS 516

Query: 646 GR 647
           GR
Sbjct: 517 GR 518


>gi|157363099|ref|YP_001469866.1| hypothetical protein Tlet_0232 [Thermotoga lettingae TMO]
 gi|157313703|gb|ABV32802.1| hypothetical protein Tlet_0232 [Thermotoga lettingae TMO]
          Length = 384

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 97/273 (35%), Gaps = 9/273 (3%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             +  G  A  K   + L   +M            +    A+L   ++  +N  ++Q  R
Sbjct: 95  STKIMGIEAAYKTYEQRLKDFEMSVASLQSQTDKLSQQIYAQLHKEIEEILNQHQNQISR 154

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + +  R++ L +K  +           N      K    +  Q+ L +   S +  
Sbjct: 155 ---LEPVLSRVEAL-EKLASSLQKSIESTDSNLNLLSSKIAELQANQTELSRSFSSSENL 210

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           L   +LL  +  +   +Q+  ++        N   KL+    ++   +   L + +   L
Sbjct: 211 LN--SLLKNVNENSQSIQKLSEQFNVQM---NAQGKLYDQKITELAARLDALSKGLQNDL 265

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             +       Q + ++ ++ +     +  I++      +   +      L+++ EEI+  
Sbjct: 266 SIQKKQLTDFQQNLELYNSRVTQLQQDMKIIESLASKDELSHVQDSITSLNQKIEEIDVN 325

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           + Q+  K E  +  +L   + E+  +   +ES 
Sbjct: 326 LTQLEQKMEDTQVGMLQKKIGELETKQKNLESS 358


>gi|156552428|ref|XP_001600592.1| PREDICTED: similar to t complex protein [Nasonia vitripennis]
          Length = 1126

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 4/119 (3%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           + L + L     E + F  E     L  +   E    L  +           E  +   +
Sbjct: 610 ELLKTRLLELEREIEIFRKESAALTLQRQKLQEERTNLQEERISMQRSLKVREETLEMEK 669

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +  +  L   ++   L+R+K  +E ++     K  A+K+      +  +  Q+ +++ +
Sbjct: 670 KKTESILQEERKR--LAREKAALESRMKDAYEK--AQKSKQERQEIQTLRDQLEELKEE 724


>gi|126324953|ref|XP_001380169.1| PREDICTED: similar to heavy neurofilament protein [Monodelphis
           domestica]
          Length = 1027

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 71/243 (29%), Gaps = 28/243 (11%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               QA+ DR      K         +   + A  R Q+     +      + +  +  +
Sbjct: 142 KELLQALNDRFAGYIDKVRQLELQNRQLEGEAASLRQQQAGRSAMGALYEREIREMRAAA 201

Query: 482 LR---EAALLLTLINHPAILQEQY---QELADIRYDNNELQKLWSFLFSDFVEQKYF--- 532
           LR   E   L   + H  +L++     Q L D      ELQ     L     E       
Sbjct: 202 LRLGAEQGQLR--LEHERLLEDIAHAQQRLDDEARQREELQAAARALHRYADEAGLARAE 259

Query: 533 ---------LPEEIHQRLCERGFGELLKQLD-------RQVRDAGLWSATTEANIVDVRQ 576
                          +R  +    ELL Q+        R +  + + SA  E        
Sbjct: 260 LQKKVQALQDEGAFLRRRHDDEVAELLSQIQAAGPPDSRDLVKSDVTSALREIRAQLEGH 319

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             Q  L   + FR+   +  E   ++     +   E+       L     ++  ++  + 
Sbjct: 320 AVQNTLQSEEWFRVRLDRLSEA-AKVNTDAMRSAQEEITEYRRQLQSKTTELEALKGTKD 378

Query: 637 MIE 639
            +E
Sbjct: 379 SLE 381


>gi|123449579|ref|XP_001313507.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121895393|gb|EAY00578.1| hypothetical protein TVAG_357840 [Trichomonas vaginalis G3]
          Length = 525

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 77/224 (34%), Gaps = 16/224 (7%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + I   ++ LF +  +E SG       ++            +Q    +        
Sbjct: 256 DDLLEDIMKEMKTLFDRTESEVSGIHNADLLSSSLEPSTDTLIASLQRLQCQNMKRSAI- 314

Query: 482 LREAALLLTLINHPAI----LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           L E  LL++ +N   +    + +  +++ +        +K  +      +EQ      + 
Sbjct: 315 LEERNLLISTLNSREVDTSEVDKIRRQIGEYS-TQLSAKKDQNKKLEKAIEQLTNEINDA 373

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
           + RL +      +  +     +  +     E+ I D++               L ++  E
Sbjct: 374 NNRLVQAQIDAEVA-VKTMESNKSIQRLEMESKIEDLK---WNLQNEKDDVESLKKELME 429

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
            + +  ++ A  E + T      L+++  Q+ Q ++  A+ E F
Sbjct: 430 QQNEQRRILAAKEEDYTD----ELNQMKKQLEQGKA--AIKEKF 467


>gi|17531553|ref|NP_495637.1| SPinDLy (Drosophila chromosome segregation) homolog family member
           (spdl-1) [Caenorhabditis elegans]
 gi|1055047|gb|AAA81050.1| Spindly (drosophila chromosome segregation) homolog protein 1,
           confirmed by transcript evidence [Caenorhabditis
           elegans]
          Length = 479

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/132 (10%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN- 570
           + +L+ L   +  D         + +   L        L++++++  +  +     ++N 
Sbjct: 56  SEQLRDLHVEM--DGKNATILDRDALIDSLRSEIDK--LEKINKEFANGSVIPEHDDSNS 111

Query: 571 --IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
               ++ +  +      +    L  +  E+EK      A    ++   ++  + ++   +
Sbjct: 112 FGESEMLRISEDCQKYKETATALYERNAELEK-----EAVNLKDEIESMMDHIRDLKNHM 166

Query: 629 HQIESQEAMIEG 640
              + + A +EG
Sbjct: 167 ETRDEEIARLEG 178


>gi|73985204|ref|XP_857467.1| PREDICTED: similar to sarcolemma associated protein isoform 12
           [Canis familiaris]
          Length = 635

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 75/247 (30%), Gaps = 1/247 (0%)

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
                + +       + + + +   K   + I + + +    QA  + LQ          
Sbjct: 183 KDLSDKLKVAEGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDFTNERL 242

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           +       +          S    +SS                L    +    +   Q +
Sbjct: 243 TALQENQARAKESDLSDTLSPSKEKSSDDTTDAQMDEQDLNEPLAKVSLLKDDLQGAQSE 302

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
             A     +   + + +   +   +QK F  + + +    + +   +++  +Q++     
Sbjct: 303 IEAKQEIQHLRKELIEAQELARASKQKCFELQALLEE-ERKAYRNQVEESSKQIQVLQAQ 361

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
                 NI ++R+     +   +   L +R +  +  Q A+  A       A L   L +
Sbjct: 362 LQRLHINIENLREEKDSEITSTRDELLSARDEILLLHQAAEKAASERDTDIASLQEELKK 421

Query: 624 VHIQIHQ 630
           V  ++ +
Sbjct: 422 VRGELER 428


>gi|297671013|ref|XP_002813642.1| PREDICTED: sarcolemmal membrane-associated protein-like isoform 2
           [Pongo abelii]
          Length = 790

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 86/263 (32%), Gaps = 9/263 (3%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
           K+       +    + E +       +   + +           D         A++++L
Sbjct: 322 KVAEGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDFTNERLTALQEKL 381

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
             + + ++T+     +  K+N     +   S  L  S       +    + E  L   L 
Sbjct: 382 --IVEGHLTKAVEETKLSKENQTRAKESDFSDTLSPSKEKSSDDTTDAQMDEQDLNEPLA 439

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV-----EQKYFLPEEIHQRLCERGFG 547
               +  +     ++I     E+Q L   L          +QK F  + + +    + + 
Sbjct: 440 KVSLLKDDLQGAQSEIE-AKQEIQHLRKELIEAQELARTSKQKCFELQALLEE-ERKAYR 497

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             +++  +Q++           +I ++R+     +   +   L +R +  +  Q A+  A
Sbjct: 498 NQVEESTKQIQVLQAQLQRLHIDIENLREEKDSEITSTRDELLSARDEILLLHQAAEKAA 557

Query: 608 KGEAEKTAILISILHEVHIQIHQ 630
                  A L   L +V  ++ +
Sbjct: 558 SERDTDIASLQEELKKVRAELER 580


>gi|297272141|ref|XP_001102680.2| PREDICTED: cytospin-B isoform 3 [Macaca mulatta]
          Length = 790

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 90/280 (32%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   +   TE+    
Sbjct: 496 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKTENGSLK 555

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   +    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 556 SHLQGEKQKAIEASAMEQTAES--CEVQEMLKVARAEKDLLE--LSCNELRQELLKANGE 611

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 612 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 671

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + +    
Sbjct: 672 VEQHRAVKLHNNQLISELESNVIK----------LEEQKSDLERQLKTLTKQMKEDTEEW 721

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 722 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 761


>gi|257153469|ref|NP_001158014.1| disrupted in schizophrenia 1 protein isoform f [Homo sapiens]
 gi|238066691|gb|ACR40053.1| disrupted in schizophrenia 1 isoform 16 [Homo sapiens]
          Length = 681

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 95/354 (26%), Gaps = 45/354 (12%)

Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390
              + DL             +      DP S        A       S       W    
Sbjct: 271 TRVSADLAQAARNSSRPERDMHSLPDMDPGSSSSLDPSLAGCGGDGSSGSGDAHSWDTLL 330

Query: 391 ENRSFNTPDERAELEIHLKNCINHIK------DQKLRYYY--SQAIRDRLQQLFQKYITE 442
                   D        ++     +K      D      Y  ++ ++ RL+ L Q+ I+ 
Sbjct: 331 RKWEPVLRDCLLRNRRQMEVISLRLKLQKLQEDAVENDDYDKAETLQQRLEDLEQEKISL 390

Query: 443 HSGYGRYWKKNARH----RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL--------- 489
           H          +        Q   + R   +    G  +  P   E  LL          
Sbjct: 391 HFQLPSRQPALSSFLGHLAAQVQAALRRGATQQASGDDTHTPLRMEPRLLEPTAQDSLHV 450

Query: 490 ------TLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYF--LPEEIHQR 540
                  L+     LQ++ + L    +      Q+L   +     + ++       +  +
Sbjct: 451 SITRRDWLLQEKQQLQKEIEALQARMFVLEAKDQQLRREIEEQEQQLQWQGCDLTPLVGQ 510

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL---------- 590
           L      E+ K L   +  AG      E     +R   ++  +L    +           
Sbjct: 511 LSLGQLQEVSKALQDTLASAGQIPFHAE-PPETIRSLQERIKSLNLSLKEITTKVCMSEK 569

Query: 591 ----LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
               L ++  +IE Q+  +        +        ++  +I  + S+   +EG
Sbjct: 570 FCSTLRKKVNDIETQLPALLEAKMHAISGNHFWTAKDLTEEIRSLTSEREGLEG 623


>gi|242020919|ref|XP_002430898.1| synaptonemal complex protein, putative [Pediculus humanus corporis]
 gi|212516109|gb|EEB18160.1| synaptonemal complex protein, putative [Pediculus humanus corporis]
          Length = 559

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 88/273 (32%), Gaps = 23/273 (8%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           + L        ++   +E         +   + E +L      I     R          
Sbjct: 291 QILQDLERDQFNLCQMKEKNLLRMKILELLPDGENNLNKYQQVIDSASQRLV-------S 343

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           L   ++K+        R   +    +  +   +     SL + +   +  L+    LL+ 
Sbjct: 344 LANQWEKHRIPLIEKYRKSVQVQSDKTSETVKKAETAKSLGEKRRELEIDLKNKDKLLSQ 403

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           ++         +++      +   +++   + +   ++          R  ++    L  
Sbjct: 404 LHVEN------EKVGKEVNRSAYTRRILEIINNIEKQKTEIEKVLRDTREIQKEINTLSG 457

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQ----------QALALYKRFRLLSRQKEEIEKQ 601
           QLDR    A              R+ Y+          Q +A+ +    + R+  ++E Q
Sbjct: 458 QLDRSFTVADETIFRDAKKDETSRKAYKLLATLHSDCDQLVAMVQDTGAILREIRDLEDQ 517

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           I +  +K  A     +++ L+++  +  Q+ +Q
Sbjct: 518 IEKEKSKNIAANLERIMADLNQMKNESAQLTAQ 550


>gi|14520349|ref|NP_125824.1| hypothetical protein PAB0081 [Pyrococcus abyssi GE5]
 gi|5457564|emb|CAB49055.1| Hypothetical protein, containing archaeal coiled-coil domain
           [Pyrococcus abyssi GE5]
          Length = 300

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 95/266 (35%), Gaps = 7/266 (2%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           DP+   R   +         ++ L     ++E         ++  E    L+      K 
Sbjct: 6   DPEEIKRIKRELEELHNEKRNIELKLEELQKELNIWVQKRDEKNLE-VKRLREKAREFKA 64

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +         I  R+++L +     ++     +++   +R ++   ++L +  + K K+ 
Sbjct: 65  K------RDEINQRIKELKKNRDEINAKLDLLYQEALEYRTKRDEFRQLRRLKMPKEKIE 118

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           ++    E  L  T    P   ++   ++  +  +   +Q++  +       +K     + 
Sbjct: 119 ERIEKLEWELQTTPNISPEREKQIVDQIQVLATELEIIQQIERYNNKLQEVRKKIDQLKK 178

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +R       +L  Q  +            +    +  + +Q+ + L ++ R + R+  E
Sbjct: 179 ARRAISMEIQQLANQSQQFHEQMIKTYQKADEVKKEADEYHQKVVELREKIREVRRELRE 238

Query: 598 IEKQIAQVTAKGEAEKTAILISILHE 623
           IE++I +   K +      L++ +  
Sbjct: 239 IERKILEYDQKHKELIAYKLVARMRA 264


>gi|328719884|ref|XP_003246891.1| PREDICTED: 5-azacytidine-induced protein 1-like [Acyrthosiphon
           pisum]
          Length = 942

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/196 (11%), Positives = 64/196 (32%), Gaps = 9/196 (4%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYW--KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            + +  ++          H    +    K+ A  + +K     L    + +  +      
Sbjct: 522 VKELTKKMNDALSSQEERHKVELKKAIDKQTASEKIKKDRWVDLKTKKIKEMTIKGIEPE 581

Query: 483 REAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                +        + +    ++ +I    +  +  +   + ++  +      E    RL
Sbjct: 582 LNRMSVAYQEELSELRRIHQSQIEEIEATWHRRMATMRDKMDAEREQAIVTERENSRNRL 641

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                   + +L++  +D        E +   +RQ  +  + L ++ + L ++ E++  +
Sbjct: 642 EME-----IAELEKSYQDQRKR-LLGEIHGERLRQERENDVTLMEKQKALEQKFEKLVLE 695

Query: 602 IAQVTAKGEAEKTAIL 617
           I +   K E E    L
Sbjct: 696 IQEKINKKEQEFQNEL 711


>gi|321457133|gb|EFX68226.1| structural maintenance of chromosome protein 3 [Daphnia pulex]
          Length = 1200

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 73/239 (30%), Gaps = 16/239 (6%)

Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460
             + +   +     I D++L+    + + D           +     +  +     +   
Sbjct: 213 YQKWDKIRRAVEYTIHDRELKET-RKKLDDMENTRKDSGDRQDKLRQQLERAQENSKSAS 271

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLL----TLINHPAILQEQYQELADIRYDNNELQ 516
              + L   +    +     +  +  LL       +    +  E   +         ELQ
Sbjct: 272 RELRDLKHRAQAAREERDTLNAEQQQLLKEKSKLELTIKDLSDEVQGDNQSKERAERELQ 331

Query: 517 KLWSFLFSDFVEQKYFLPE-EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           +L   +     E +   P+ E  +R  E    EL  +  ++          ++    D R
Sbjct: 332 RLHETIAQKDGELERIKPQYEEMKRREEECTRELALKEQKRKELYAKQGRGSQFTSRDQR 391

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             + Q        + LS+  +E  +QI ++      E          E+  +I ++ S+
Sbjct: 392 DTWIQ-----NELKSLSKAIKEKNEQIERL-----QEDLKRDSRKRVELEKKIEEMTSE 440


>gi|307545193|ref|YP_003897672.1| hypothetical protein HELO_2603 [Halomonas elongata DSM 2581]
 gi|307217217|emb|CBV42487.1| hypothetical protein HELO_2603 [Halomonas elongata DSM 2581]
          Length = 516

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 83/268 (30%), Gaps = 24/268 (8%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
           A + L+ +         +      SF T  E       L+     +   +      Q + 
Sbjct: 183 AIDSLMAKGEAPSVHKIRETLGTGSFTTISEHLREWRRLREENRDVPPPQGMPAELQELA 242

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           + L    Q+   +   + R    +     ++  ++   ++             RE AL  
Sbjct: 243 EALWTQAQEAANQALAHYRQEADSRVDDARQQAAEAERRAEDA--------EQRETALSA 294

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            L      L+++  ELA +R ++  LQ           E++    + + + +      E 
Sbjct: 295 HLTQIDQRLEQRTSELAQLRTEHEALQ-----------EREARSRDRLDELVRRLEAAEE 343

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
             +   Q     L            ++  +   A  +   LL ++++E      Q   K 
Sbjct: 344 EARRREQAHRQALEEQAETHRERLAQEEERNETAEARLMGLLDQERQE-----RQAAEKA 398

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAM 637
            A +   L   L  +  Q   +++  A 
Sbjct: 399 HAGREQRLTQRLETLQEQQSALQTDLAA 426


>gi|302348755|ref|YP_003816393.1| DNA double-strand break repair rad50 ATPase [Acidilobus
           saccharovorans 345-15]
 gi|302329167|gb|ADL19362.1| DNA double-strand break repair rad50 ATPase [Acidilobus
           saccharovorans 345-15]
          Length = 912

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 74/215 (34%), Gaps = 16/215 (7%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            ++    + I   L +   K + E         +     +           S     +S 
Sbjct: 143 IIKQGGLEEIASILAREESKRLRELVETAIGIPQLRSAAENIRSHAIRASRSDGTTIVSV 202

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +   R  + +  ++   ++ + + + L+++R    EL KL   +     E +    E   
Sbjct: 203 EVGPRRRSEVAMMLQ--SVRKVRQERLSELRALEEELGKLKGEVERL--EAEVKEREAKV 258

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             LC       + +L+RQ+++     A       ++            + R L R+ +E 
Sbjct: 259 NELCSPLGA--IPELERQLKEFEQQLAGKSREAEELE----------LKSRELERRVQEA 306

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           EK     + + + ++   L + +  ++  +  + S
Sbjct: 307 EKAKGLASLEPQVKEVDSLNAEIAGIYRDLTALRS 341


>gi|301770819|ref|XP_002920831.1| PREDICTED: LOW QUALITY PROTEIN: protein Daple-like [Ailuropoda
           melanoleuca]
          Length = 2027

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 55/140 (39%), Gaps = 9/140 (6%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLF---SDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
           +++   +L   +  N +L+ L   L             L  +  +++ +    +    L+
Sbjct: 510 IEKLQTQLEREKQSNQDLETLSEELIKEKEQLQSDMESLKADRARQIKD--LEQEKDHLN 567

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           + V      S  +  +    +   ++  AL++     S +  ++E +  Q+    + E+ 
Sbjct: 568 QAVWSLRERSQVS--SEARAKDIEKENKALHQTVTETSSRLSKLEFEKQQLHK--DFEQV 623

Query: 615 AILISILHEVHIQIHQIESQ 634
              +  + E+  ++H++E +
Sbjct: 624 KEKVERVEELEKELHRLEKE 643


>gi|299751835|ref|XP_002911693.1| CAP-Gly domain-containing protein [Coprinopsis cinerea
           okayama7#130]
 gi|298409556|gb|EFI28199.1| CAP-Gly domain-containing protein [Coprinopsis cinerea
           okayama7#130]
          Length = 1099

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 54/448 (12%), Positives = 142/448 (31%), Gaps = 37/448 (8%)

Query: 214 RGQVIAFGGR-------TLSKGESVKYLNSPETILFHKGKN-LYNFFGALNYLQKSIRKD 265
           +G+      R       ++    S    + P            +  FG     +      
Sbjct: 367 KGRPSGTTPRARLPSSVSMPPPASPFSKSHPNHHDEAPESISQFRLFGDRPDSRPGSSAS 426

Query: 266 VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDD 325
           VR + +S I  ++  ++ L      ++   +S  T+  E       +L     L  + D 
Sbjct: 427 VRSDDNSLIGRLQSRLEALEYENERLRIAAASAPTSQPEPAADDAERLRELEELRGEKDG 486

Query: 326 PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDML 385
              R      +L     +   +   V         +      K   ++L  +        
Sbjct: 487 ALSRVTDLEEELKQAKSLTSRQEQEVASLNST-IQALQLDLDKEKADRLDDQ---QAFTS 542

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
            + E ++   +    +   +    +     +D +++    +A++ +L Q+  +   E   
Sbjct: 543 LQAEMQDVVKDMEQLQKVFDDQQASQSKLDEDLQVKEAEIEALQSKLAQVTAELEEERKE 602

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH-PAILQEQYQE 504
            G       R   Q+  +    + S ++G      +   A L        P +     + 
Sbjct: 603 LG-TQIDELRIAGQETIALYEERLSEIEGHRYDLETRLNALLEKAASQDQPELPPRMGET 661

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
            A+I       + L   +     ++   + + I          E   +   +++      
Sbjct: 662 AAEID-----NETLREQVI-HLQKKISMMEDIIEDHRANAEKEEATHR--ERMKRLKEKE 713

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
            + +  + + R+  ++ +   ++ R    + EEIE+ + + T   E  +     + +  +
Sbjct: 714 ESMKKELNEGRKEVERVVRAEQQARN---RVEEIEEALRESTLALENAR-----AEIEML 765

Query: 625 HIQIHQIESQEAMIEGF----GKMSGRL 648
             ++  ++    ++EG     G +S R+
Sbjct: 766 RSELANLD---GLVEGSADMDGDLSTRI 790


>gi|298384357|ref|ZP_06993917.1| ATP-dependent chaperone protein ClpB [Bacteroides sp. 1_1_14]
 gi|298262636|gb|EFI05500.1| ATP-dependent chaperone protein ClpB [Bacteroides sp. 1_1_14]
          Length = 862

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/212 (9%), Positives = 66/212 (31%), Gaps = 10/212 (4%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +QKY  +     R ++           +  +++    + +      +++ A++  +    
Sbjct: 317 YQKYFEKDKALERRFQIVQVDEPDTLSTISILRGLKERYENHHHVRIKDDAIIAAVELSS 376

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL   + S   E      +     +          +   
Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDKPKL 436

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613
           ++    L            +  +Q    L  + +    + E ++ +  +   +G+  K  
Sbjct: 437 EIIGKELAELKE--AEKSFKAKWQSEKTLMDKIQQNKVEIENLKFEAEKAEREGDYGKVA 494

Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639
                    L   + +   ++  ++  +AMI+
Sbjct: 495 EIRYGKLQALDKEIEDTQEKLRGMQGDKAMIK 526


>gi|221635804|ref|YP_002523680.1| hypothetical protein trd_A0398 [Thermomicrobium roseum DSM 5159]
 gi|221157738|gb|ACM06856.1| conserved hypothetical protein [Thermomicrobium roseum DSM 5159]
          Length = 429

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 21/173 (12%)

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP--------EEIHQRLC 542
           +  +P  +Q+    L      + E + L   L       +            E + Q+L 
Sbjct: 1   MSAYPKHIQDFLHLLE----TSPEFRALVRSLLLSEELLQLPDLVRSLAATQERLAQQLE 56

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-YKRFRLLSRQKEEIEKQ 601
              F + +++    V      +A   A +VD  +  +Q  A   ++ R L+   E +E Q
Sbjct: 57  S--FQQAVERALAAVSAQQAETAAQIAALVDRMEQVEQQQAATTEQIRQLTASIERVEAQ 114

Query: 602 IAQVTAKGE--AEKTAILISILHEVHIQI----HQIESQEAMIEGFGKMSGRL 648
           I  +TA+ E    +   L   +  V  QI     ++E  EA IE       R+
Sbjct: 115 IEALTARMERVEAQIEALTERMERVEAQIGALTERMERVEAQIEALTARMERV 167


>gi|212543263|ref|XP_002151786.1| spindle-pole body protein (Pcp1), putative [Penicillium marneffei
           ATCC 18224]
 gi|210066693|gb|EEA20786.1| spindle-pole body protein (Pcp1), putative [Penicillium marneffei
           ATCC 18224]
          Length = 1242

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 49/419 (11%), Positives = 118/419 (28%), Gaps = 24/419 (5%)

Query: 223 RTLSKGESVKYLNSPETILFHKGKNLYNFFGAL-NYLQKSIRKDVRRNSSSFIILVEGYM 281
           RTL      K   +P      +   L N      + + K+         S+        +
Sbjct: 88  RTLPANAPPKGEFTPMMRSVTRNNYLRNMSAVRGSGVPKTPAYLKDGYRSNGNTPGLPPI 147

Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
           D  ++ + G    ++                 +P       G   G+    + +  +   
Sbjct: 148 DATNIYEDGGTTSMAMDDITPLPQVASSSPNGTPLPYFSRKGGAGGVLDTDQNMLSLKEQ 207

Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER 401
                           D ++F         E+ + ++ P  +    +E           +
Sbjct: 208 EN---------AINKLDKENFGLKLKIHYLEEQLKKAGPGYNQAALKENTELKVARITMQ 258

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
            E+  + K      +D +      Q +R++ ++       +        +   R      
Sbjct: 259 QEISRYKKGLHQAERDLEAYRLQLQELREKAKRRQADEAIQREMDYMREEIATREAQVNN 318

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
             + L           ++       L  TL     I+  + +E+  ++ D+ +     + 
Sbjct: 319 LQEELRNVKDKDSDEVERLRDEIVDLETTLREKERIIDAKDEEIEILKEDDGQDSNAVAE 378

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L ++    +     E    L +              R+        E    ++++   + 
Sbjct: 379 LEAELDRARQQ-LAEFQDDLEKAKADA-----REANRNREQAIEQKEKAEENLKELQDEM 432

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
                  + LSRQ EE  + + +        +   L    +++       E +E M+EG
Sbjct: 433 ANKSFSTKGLSRQLEERAEDLEK--------ELNQLRDEYNDLKQDYAAKERREEMLEG 483


>gi|167622710|ref|YP_001673004.1| hypothetical protein Shal_0770 [Shewanella halifaxensis HAW-EB4]
 gi|167352732|gb|ABZ75345.1| conserved hypothetical protein [Shewanella halifaxensis HAW-EB4]
          Length = 1229

 Score = 39.1 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 9/143 (6%)

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSD-FVEQKYFLPEEIHQRLCERGFGELLKQ 552
           HP+++ ++             L+ L+        ++   +   E   R+      E+L  
Sbjct: 574 HPSLIADKLNA--------ESLEALYGIALDLKAIDAPEYAASEQELRVKHENAKEMLAS 625

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
                 +A     T+ A +  + +    A   YK  R   R+  + ++   +       E
Sbjct: 626 AKELQAEAEESLVTSNAELDKLLRELTFARTAYKNSRDDLRRLFDDKRAEQEKINLALNE 685

Query: 613 KTAILISILHEVHIQIHQIESQE 635
           + A     L  +   I Q++ Q+
Sbjct: 686 RKAASQKQLARIDSDIKQLQGQQ 708


>gi|237750672|ref|ZP_04581152.1| predicted protein [Helicobacter bilis ATCC 43879]
 gi|229373762|gb|EEO24153.1| predicted protein [Helicobacter bilis ATCC 43879]
          Length = 664

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 59/177 (33%), Gaps = 24/177 (13%)

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
            + P       + V  K +    + E  L         IL++  Q L D           
Sbjct: 29  PQVPQTTPQAQNQVADKTTGDTYVTEKNLA-------DILKKLNQSLGDEAL-------- 73

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
              +     E    L +E  ++L E+     + +L++Q+ D  L       +        
Sbjct: 74  -KEIIEQQKEALEQLNKEFAEQLKEKNDK--IAELEKQINDLLLNQPVNPNDPTLAAT-- 128

Query: 579 QQALALYKRFRLLSRQK--EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
              + L K+   L ++   E +E+   +   +  + +  +    L  +  QI  +E+
Sbjct: 129 --LVDLKKQIDTLRQEAAAEALEQDKIKADLEANSNEDIVTKQELEAIKKQIEGLEN 183


>gi|224074803|ref|XP_002187162.1| PREDICTED: similar to fast myosin heavy chain HCII [Taeniopygia
            guttata]
          Length = 1324

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/275 (9%), Positives = 76/275 (27%), Gaps = 33/275 (12%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               +               +L   +K  +   + +       + + +  Q+  +      
Sbjct: 871  FCIQYNIRAFMNVKHWPWMKLFFKIKPLLKSAESE-------KEMANMKQEFEKTKEELA 923

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
                +  +   +          L      +         R   L+ T I   A ++E  +
Sbjct: 924  KSEAKRKELEEKMVKLVQEKNDLQLQVQAEADSLADAEERCDQLIKTKIQLEAKIKEVTE 983

Query: 504  ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE----------------RGFG 547
               D    N EL      L  +  E K    +++   L +                    
Sbjct: 984  RAEDEEEINAELTAKKRKLEDECSELKK-DIDDLELTLAKVEKEKHATENKVKNLTEEMA 1042

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-AQVT 606
             L + + +  ++        +  + D++    +   L K    L +Q +++E  +  +  
Sbjct: 1043 ALDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAKTKLEQQVDDLEGSLEQEKK 1102

Query: 607  AKGEAEKTAILIS--------ILHEVHIQIHQIES 633
             + + E+    +          + ++     Q++ 
Sbjct: 1103 LRMDLERAKRKLEGDLKLAQDSIMDLENDKQQLDE 1137


>gi|221129496|ref|XP_002158598.1| PREDICTED: similar to DNA-directed RNA polymerase, omega subunit
            family protein [Hydra magnipapillata]
          Length = 4378

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 90/268 (33%), Gaps = 17/268 (6%)

Query: 372  EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD- 430
            +K  + +         R+ E +   +     +L+  LK+ +N I D  L+    + I D 
Sbjct: 1961 QKNDLNAKLKDLQGKYRDLETKYNKSLALNNDLKAQLKDALNTIAD--LKSQLEKEINDN 2018

Query: 431  -RLQQLFQKYITEHSGYGRYWKKNARH-RDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
              L+  F     +       +++  R   D K       +    K  +    + + A L 
Sbjct: 2019 RDLRDNFDSLKNQFDKLKDDYQRIERDLADYKFKYADATKEIAEKKNIIDDLTAKVANLE 2078

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              ++N+  ++ +   +         E  +L   +             E+  +L +     
Sbjct: 2079 KQVVNYKQMVNQLRMDYER---STREQNRLQEEIIKMQG-----TVSELENKLQKAELEN 2130

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
               +L +++ +        E  I D+R   Q A A  +  R  + Q +E  + I +    
Sbjct: 2131 --DKLKKELNEVLAKLYLMEDEIEDLRAKLQDAQAENRELRHDNIQLKEENQNIHKELED 2188

Query: 609  GEAE--KTAILISILHEVHIQIHQIESQ 634
               E  +    +    E+  Q+ +   +
Sbjct: 2189 TNLENKRVHEELRKRDELIAQLRRARQE 2216



 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 36/350 (10%), Positives = 98/350 (28%), Gaps = 25/350 (7%)

Query: 293  NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
            +                      R V  +          ++         I G +     
Sbjct: 883  HKQRCYELEGLYKSSEEEKDKILRDVTDWKSRCTDTETDFQVFQRDSDKEIRGLKAKIAK 942

Query: 353  LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
            L    D     R Y     E    +S    +     E E       + +   E +     
Sbjct: 943  LEAHTDMVIKDRDYTNDQLEAERAQSQKYKE-----EFERVQREYLEHQKVCERYADQI- 996

Query: 413  NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-RDQKGPSQRLMQSSL 471
                    R    + +R++L ++            +         + ++   ++L  S  
Sbjct: 997  ------LERDKIIEDLRNKLYKMEVDMDIFKEQLSKAQTAEQIALQKKEKIEKKLNASEA 1050

Query: 472  VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                LS +    +  ++     + A+  +    L +I+   + ++ L   +     +  Y
Sbjct: 1051 KVKDLSDQNESLKNRIIELERQNNALETQVDDLLKEIKALKDRVKDLDDVIRDSRNKIIY 1110

Query: 532  FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               E    +         + +L   + +A     +   +I ++               LL
Sbjct: 1111 LETEINSIQHLLNDRDATIAKLQSDLDNAHDQINSFRKHISELETTL----------DLL 1160

Query: 592  SRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEAMIE 639
             ++K++++ Q+     + +        ++     +  ++  ++ + A IE
Sbjct: 1161 EQEKDDLQLQLNNSERQKDELKNNLDKVVQEAQLIESELSALKQKLAKIE 1210



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 72/220 (32%), Gaps = 8/220 (3%)

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             + ++ I +  +   +K    +       +  A+    +  +  L Q +      +    
Sbjct: 1410 RHLNRDIEELYRDRNEKLKQIYERDIIIEQLRAKIDLLENENNNLKQENDRLRGANDALE 1469

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
              + +L   L      ++E   +L   +    +LQ     L+    +        +    
Sbjct: 1470 NEKRSLQGKLNLANNRVKELEDQLEAAKRAKEDLQA---SLYELQKKYVTLETAHMKCSD 1526

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             E+   + +  L ++++         +     +     + +   ++ R L    + + ++
Sbjct: 1527 REKELLKQISDLKQKLQALEDALNDEKLKNKQLEA---ENIHNQEQIRDLEALIDSLRQK 1583

Query: 602  IAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAMIE 639
            I+    + E    +   L   L     QI  +E+Q  ++E
Sbjct: 1584 ISDDDKEIERLKAENDNLRHQLMAAKKQIDDLENQIGILE 1623


>gi|238488991|ref|XP_002375733.1| nuclear segregation protein (Bfr1), putative [Aspergillus flavus
           NRRL3357]
 gi|220698121|gb|EED54461.1| nuclear segregation protein (Bfr1), putative [Aspergillus flavus
           NRRL3357]
          Length = 473

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 + +L++QV    +     +  + DV    ++    +       +   +I+ QIA
Sbjct: 92  EEIDREIARLEKQVDSGTMRLVDEKKALADV-SSLRKQRKNFAGLDEAQKVINDIKAQIA 150

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +    +  +   L     E+  ++  I++++
Sbjct: 151 ALKKTLDNPEAKALSDKYAEIQKELDAIKAEQ 182


>gi|219521306|gb|AAI45321.1| Ralbp1 protein [Mus musculus]
          Length = 594

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 77/262 (29%), Gaps = 40/262 (15%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIK---DQKLRYYYSQAIRDRLQQLFQKYITE 442
                 +      D     E+  K  I +I       ++ +    +   LQ   +    E
Sbjct: 313 CNHLLLSWLIVHLDHVIAKELETKMNIQNISIVLSPTVQEFLLNCLHRDLQGGIKDLSKE 372

Query: 443 HS--------GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
                        +   + A+ ++ +    + + S   +    ++ +  E  + + L   
Sbjct: 373 ERLWEVQRILTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVINILLAQE 432

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             IL EQ + LA  ++       L   + S                  +     L  ++ 
Sbjct: 433 NEILTEQEELLAMEQF-------LRRQIAS-----------------EKEEIDRLRAEIA 468

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                     + TE    D     +    L      L RQ EE+E +   +      E+ 
Sbjct: 469 EIQSRQQHGRSETEEYSSDSESESEDEEELQLILEDLQRQNEELEIKNNHLNQAVHEER- 527

Query: 615 AILISILHEVHIQIHQIESQEA 636
                 + E+ +Q+  ++ Q A
Sbjct: 528 ----EAIIELRVQLRLLQMQRA 545


>gi|194381350|dbj|BAG58629.1| unnamed protein product [Homo sapiens]
          Length = 844

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 89/280 (31%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   +    E+    
Sbjct: 272 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKMENGSLK 331

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   +    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 332 SHLQGEKQKATEASAVEQTAES--CEVQEMLKVARAEKDLLE--LSCNELRQELLKANGE 387

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 388 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 447

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + E    
Sbjct: 448 VEQHRAVKLHNNQLISELESSVIK----------LEEQKSDLERQLKTLTKQMKEETEEW 497

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 498 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 537


>gi|149640806|ref|XP_001509508.1| PREDICTED: similar to Hook-related protein 1 isoform 1
            [Ornithorhynchus anatinus]
          Length = 1853

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 73/238 (30%), Gaps = 17/238 (7%)

Query: 406  IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              L+  +  +K    R    +     L+Q   +   +     +  K+  +  + K  +  
Sbjct: 793  QTLQKSLEELKISSKRLEQLEKENKLLEQETSQLEKDKKQLEKENKRLRQQAEIKDITLE 852

Query: 466  LMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 +   +   K   +E A+   + +    + +E  + +     D   L  L   L S
Sbjct: 853  ENNVKIGNLEKENKSLFKEIAVFKDSCVRLKELEKENKELVKRTTIDKKTLLTLREDLVS 912

Query: 525  DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                      E++  +       +L ++L++   +        +       +  +  L  
Sbjct: 913  ----------EKLKTQQMNNDLEKLTQELEKIGLNKERLLHDEQNTDDSRYKLLESKLES 962

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIE 639
              +  L   + +E +    +   +        L   L  V      + Q + +E M++
Sbjct: 963  TLKKSL---EIKEEKIAALEARLEESTNFNQQLRQELKTVKKNYEALKQRQEEERMVQ 1017


>gi|134056284|emb|CAK37518.1| unnamed protein product [Aspergillus niger]
          Length = 1161

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 55/153 (35%), Gaps = 14/153 (9%)

Query: 498 LQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            +E  +ELAD       ++ +L + +      ++     E +    E+   E +   D  
Sbjct: 455 AEEMIEELADKNIRYQEDINELKAAIEDLEALKEINDELEYNHIETEKQLQEEIDYKDGL 514

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
             +     A  +  I D+     +   L    +          +QI++  A   + ++  
Sbjct: 515 FTEQSRRLAQQDEVIEDLEYTLVRFRELVSTLQGDLEDMR-ASQQISEAEATDLSTRSRA 573

Query: 617 LI------------SILHEVHIQIHQIESQEAM 637
           ++            +    + I+++++E++EA 
Sbjct: 574 MMDLNLKLQASVSKAQTKTIDIELNRMEAEEAA 606


>gi|157865357|ref|XP_001681386.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68124682|emb|CAJ02637.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 1144

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 71/237 (29%), Gaps = 18/237 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            Q +  R+ +L     +  +       +  R  +     Q     +     +    S  E
Sbjct: 144 KQQLVARVAELEMSMSSTPAPPLMAELRQLRETEALLRQQLQECQASTAATVGTFLSTVE 203

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK--YFLPEEIHQRLC 542
            +LL      P ++    + + +    N  +Q     L  +   +       EE ++R  
Sbjct: 204 NSLLAAR-QVPELIH-AMETIKENVRTNQTMQAAQRVLLEEMERRHAIEHEIEETYRREE 261

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            +   E +  L+ +V  A        +    +       Q A+    +     +     +
Sbjct: 262 AKVLRERIASLEDEVSAAAEREEAFASERGGMEAQLAAAQDAIRQLTQQHSEEQVALAQK 321

Query: 600 KQIAQVTAKGEAEKTAILI--------SILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
           +Q A+  A          +          + E+  Q+  + + EA +       GR+
Sbjct: 322 RQRAEQDASSNPTSIRGELTKFWYEGRDRIRELERQLQTMHTAEANLR---VSQGRV 375



 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 20/195 (10%), Positives = 59/195 (30%), Gaps = 19/195 (9%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
           +   +S      +        A++  L+     L+ + Q   + R     L++     F 
Sbjct: 2   QHTSASPATIPQASPRPAHSLAVIEELLRENTTLKARLQLSDEQRVTQEVLREQLHRFFE 61

Query: 525 DFVEQKYFLPEEIHQRLCERGFGE---------LLKQLDRQVRDAGLWSATTEANIVDVR 575
                +    + +  +  + G                         L     E    +  
Sbjct: 62  CVAAHEQASQKVLTDQWQDDGEKSNAPDDGAGVARPSFMNAAVSEVLRRMQEEKRQAEAA 121

Query: 576 QGYQQALA---LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH------- 625
               Q+     L+ +   + ++K+++  ++A++     +     L++ L ++        
Sbjct: 122 LAQLQSDTVAPLHAQLEAMEKEKQQLVARVAELEMSMSSTPAPPLMAELRQLRETEALLR 181

Query: 626 IQIHQIESQEAMIEG 640
            Q+ + ++  A   G
Sbjct: 182 QQLQECQASTAATVG 196


>gi|24640674|ref|NP_727291.1| moesin, isoform A [Drosophila melanogaster]
 gi|7290978|gb|AAF46417.1| moesin, isoform A [Drosophila melanogaster]
          Length = 640

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEK 600
            E+   +  ++  +    A   +   +    D  +  Q+ +   +R           +E+
Sbjct: 374 EEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEE 433

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Q+ Q+ A  +  +       L  +  ++ + ++ EA+
Sbjct: 434 QLKQLQAAKDELELRQ--KELQAMLQRLEEAKNMEAV 468



 Score = 37.9 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 94/273 (34%), Gaps = 7/273 (2%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K + ++     +           E+          +LE++  N    I+++K    +
Sbjct: 222 DQHKMSKDEWEQSIMTWWQEHRSMLREDAMMEYLKIAQDLEMYGVNYFE-IRNKKGTDLW 280

Query: 425 SQAIRDRLQQLFQKYI-TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                  L    Q    T   G+     +N    ++K   + + + +      + +  + 
Sbjct: 281 LGVDALGLNIYEQDDRLTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRIN 340

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  L L + NH   ++ +  +  D++    + ++  +    +  + +  L         +
Sbjct: 341 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQ 400

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           + + + LKQ+   +  +       +  I  + +  +Q  A       L  +++E++  + 
Sbjct: 401 QEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEEQLKQLQAA---KDELELRQKELQAMLQ 457

Query: 604 QVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
           ++      E      L   +    +++ +I+ +
Sbjct: 458 RLEEAKNMEAVEKLKLEEEIMAKQMEVQRIQDE 490


>gi|194226359|ref|XP_001916844.1| PREDICTED: similar to Pericentrin (Pericentrin B) (Kendrin) [Equus
           caballus]
          Length = 3261

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 75/272 (27%), Gaps = 36/272 (13%)

Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-----YYYSQAIRDRLQ 433
                +  +   E  +    +               ++ +  +         Q       
Sbjct: 251 QSRQRLELELIREQHAREQEEMALRCAQETAELKEKLQIEMEKNVQMIETLKQDWESERD 310

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM-------QSSLVKGKLSKKPSLREAA 486
              +    E SG  +   +N +++ +K  +++           +  +  L    +  E A
Sbjct: 311 LCLENLRQELSGKHQSELENLQNQFKKEMAEQKAELEEIFQAKNQAEFSLKTLEAQHEVA 370

Query: 487 LLLTLINHPAILQEQYQELADIRYDN-----------NELQKLWSFLFSDFVEQKYFLPE 535
           L      H  +  E  Q L D+                 LQ L+  L +   E+   L  
Sbjct: 371 LRKL---HEDLQSEHCQCLEDLELKFKGKEKEKQLELETLQALYEDLKAQSQEEIRSLWS 427

Query: 536 EIHQRLCERGFGELLKQ--LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           ++      R     L++  L R      L     + +    R+  +    L +      +
Sbjct: 428 QLESARTNRQEPSELREQPLARGSHVEELEHLRRDFDQQRQRERTEHESELEQLRIYFEK 487

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
           +  + EK           E   +L   L EV 
Sbjct: 488 KLRDAEK--------NYQEDLTLLQQRLREVK 511


>gi|313747603|ref|NP_001186369.1| ribosome-binding protein 1 [Gallus gallus]
          Length = 997

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/253 (10%), Positives = 84/253 (33%), Gaps = 15/253 (5%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
           +E     +  +   LE  ++     ++       Y   +  +L+   Q   +E   Y + 
Sbjct: 755 SEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKE 814

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
            +   +   +        ++   K         ++ + + + +    +   Q        
Sbjct: 815 VEGLRQLLSESQEQLEAAKTETQKQSKELALVRQQLSEMKSHVQDGEVAGSQADLGDPTP 874

Query: 510 YDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
           +      +L   L      +E++  L +++ + L E         L  ++    L     
Sbjct: 875 F------ELKMQLEQNEALMEKEQELRQKLTRELEEAQSSAC--SLQAELEKLRLAENAA 926

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
            +++ +     Q      ++ + L+R   +   ++ ++      ++ A     + ++  Q
Sbjct: 927 ASDMEEA----QHLKERLEKEKKLTRDLGQAATKLQELLKVT-QDQLAKERETVKKLKEQ 981

Query: 628 IHQIESQEAMIEG 640
           +H+   +++  EG
Sbjct: 982 LHEKGEEDSSKEG 994


>gi|119620504|gb|EAX00099.1| KIAA1212, isoform CRA_a [Homo sapiens]
 gi|119620505|gb|EAX00100.1| KIAA1212, isoform CRA_a [Homo sapiens]
          Length = 1788

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 42/334 (12%), Positives = 102/334 (30%), Gaps = 30/334 (8%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
           +   +   K ++++   ++   +      +  +D         K   EK I       + 
Sbjct: 497 EKENQRLSKKVEILENEIVQEKQSLQNCQNLSKD-----LMKEKAQLEKTIETLRENSER 551

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
             K   +          +  +    +    +KD            ++  ++  + I E S
Sbjct: 552 QIKILEQENEHLNQTVSSLRQRSQISAEARVKD-----------IEKENKILHESIKETS 600

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                 +   R   ++    +       + +       +E  LL   I +  I  E+ + 
Sbjct: 601 SKLSKIEFEKRQIKKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEA 660

Query: 505 LA----DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           L     ++  +N +L+K      +   + +    E              ++ L +     
Sbjct: 661 LEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQLDEENLELRRNVESL-KCASMK 719

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE------EIEKQIAQVTAKGEAEKT 614
                     +   ++  ++ L L K     + + E      +IE Q  Q T +   +K 
Sbjct: 720 MAQLQLENKELESEKEQLKKGLELLKASFKKTERLEVSYQGLDIENQRLQKTLENSNKKI 779

Query: 615 AILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             L S L ++ ++   ++     +E     S RL
Sbjct: 780 QQLESELQDLEMENQTLQKN---LEELKISSKRL 810



 Score = 37.2 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 17/159 (10%), Positives = 56/159 (35%), Gaps = 26/159 (16%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--RLCERGFGELLKQLDRQ 556
           +E  + +  + +D      + + +      Q+     +  +   + +     LLK +   
Sbjct: 139 EEFIERIQGLDFDTKA--AVAAHIQEVTHNQENVFDLQWMEVTDMSQEDIEPLLKNMALH 196

Query: 557 VRDAGLWSATTEANIVDVRQGYQQA------------------LALYKRFRLLSRQKEEI 598
           ++            I+++ +                       +   +  + LS +  + 
Sbjct: 197 LKRLIDERDEHSETIIELSEERDGLHFLPHASSSAQSPCGSPGMKRTESRQHLSVELADA 256

Query: 599 EKQIAQVTAKGEAEKTAILI---SILHEVHIQIHQIESQ 634
           + +I ++  + E EKT  L+     L ++ I++ +++ +
Sbjct: 257 KAKIRRLRQELE-EKTEQLLDCKQELEQMEIELKRLQQE 294


>gi|115908433|ref|XP_785890.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115926428|ref|XP_001179081.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 977

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 72/230 (31%), Gaps = 23/230 (10%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           I  RL+QL      + +      +K     +     Q+         +    P   E   
Sbjct: 168 ISSRLEQLIDALEEQQNQVAESREKQYTAEEALRQMQQNGHGGGGPDQHHPSPREDEDD- 226

Query: 488 LLTLINHPAILQEQYQELADIRYD---NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                +H A       ++ +             +                E+  ++L E 
Sbjct: 227 -----DHKAERGNHGNQVVESGLRQELEEANSMIKQMQEEQKQHGGVTDYEKEVEQLQEE 281

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
             G+L     R  ++A             ++Q   + L L K+   L  +     +++ +
Sbjct: 282 -VGKLKDDCSRYKKEAQHQEQVRRRESKSLKQSEIEKLQLQKQLTRLQTEMANKMRELDE 340

Query: 605 VTAK------------GEAEKTAILIS-ILHEVHIQIHQIESQEAMIEGF 641
           +TAK             + E+    +   + ++  Q+++ E+Q A +E +
Sbjct: 341 LTAKQSETLNQSSGMSEDLERMKEEMKKQIQDLQTQLNEKENQIAELEAY 390


>gi|91091932|ref|XP_966409.1| PREDICTED: similar to structural maintenance of chromosomes smc3
           isoform 1 [Tribolium castaneum]
 gi|270000783|gb|EEZ97230.1| hypothetical protein TcasGA2_TC011028 [Tribolium castaneum]
          Length = 1203

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 70/194 (36%), Gaps = 16/194 (8%)

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL--QEQYQELADIRYDNNELQKLWSFL 522
           + +Q    +   ++     E   L  L+ +  I    E    L +I  ++ + ++L +  
Sbjct: 805 QRLQKENKEAFSTRMKLEAEKNKLENLLTNNLIRRRDEVLHALQEISLEDRK-RQLVNS- 862

Query: 523 FSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
               +E+     E +++ L   E    E+ K+L  +  +   W    +     + +  + 
Sbjct: 863 -KSDLEEIDRKIERVNRELTSMESKVKEMAKRLKTEQGELENWKKKEKDAQDKIDEDAKH 921

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT--------AILISILHEVHIQIHQIE 632
                 +  LL ++ +E  ++I Q+ A    +            L   L + + Q+ +  
Sbjct: 922 LEKYATKQNLLEQKIQECVEKINQLGALPAQDLYSHYVKMSSRSLFKELEKTNNQLKKFS 981

Query: 633 S-QEAMIEGFGKMS 645
              +  ++ F   S
Sbjct: 982 HVNKKALDQFMSFS 995


>gi|327272416|ref|XP_003220981.1| PREDICTED: myosin-9-like [Anolis carolinensis]
          Length = 1960

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 100/263 (38%), Gaps = 24/263 (9%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             EK+ ++     ++    E E        ++ ELE    +    +++++ R  + QA + 
Sbjct: 880  TEKMQLQEQLQAEIELCAEAEEIRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKK 939

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++ Q  Q+   +        +K    +       + ++  L+  +       +E  LL  
Sbjct: 940  KMHQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDLIVLEDQNCKLAKEKKLLE- 998

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   + E    L +    +  L KL +   +   E +  L  E  QR   +   +  
Sbjct: 999  -----DRISEFTTNLTEEEEKSKSLAKLKNKHEAMITELEERLRREEKQR---QELEKTR 1050

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            ++L+    D     A  +A I +++               L++++EE++  +A+V  +  
Sbjct: 1051 RKLEGDSTDLHDQIAELQAQIAELK-------------MQLAKKEEELQAALARVEEE-- 1095

Query: 611  AEKTAILISILHEVHIQIHQIES 633
            A +  + +  + E+  Q+ +++ 
Sbjct: 1096 AAQKNMALKKIRELESQLTELQE 1118


>gi|324504841|gb|ADY42087.1| Tag-278 [Ascaris suum]
          Length = 909

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 92/277 (33%), Gaps = 33/277 (11%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--SQA 427
           A  +   ES   +        E    +   E+   + H +  ++  + Q     Y   + 
Sbjct: 424 ANLQSQSESQTQLQNSQVHALEAVLESVTKEKESTKEHYEGLLDKERQQAEEREYAMKKE 483

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
              +L +L ++Y        +  +++          + + +   +K  L K         
Sbjct: 484 FSAKLNELEEQYNALKEQLEQNAQRDKEELQGDDLPKLIDKMEELKADLEKSKER----- 538

Query: 488 LLTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
              ++     ++E  +++  +   ++++L  +   + ++ V    F   +          
Sbjct: 539 ---ILEKEDEIKELKKQIEQENELNDDQLAVIRDEIRTELVNSGEFGCND---------- 585

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA-QV 605
            +  K+L  +V        T +     + +  +Q   L      L+ Q +E   +   + 
Sbjct: 586 -DEFKRLKEKVSVLEEEKRTEQTEREKLFELVKQ---LQTDNEHLNEQVKEFNDKTNSEA 641

Query: 606 TAKGEAE-------KTAILISILHEVHIQIHQIESQE 635
            A  + E       K   L++ L E   +I Q+E  +
Sbjct: 642 NASEDDESNTSYNLKIERLMNDLREREKRIDQMEETQ 678



 Score = 37.9 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 85/273 (31%), Gaps = 19/273 (6%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                    +E+     +       +R  E       +  +++    +  +   KD + R
Sbjct: 120 QTLEDTVAEYERQKYNVMGTFSEYRERVAERERKLEAEYSSKIIALSEEVLGAKKDFEAR 179

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               QA++D+ ++  ++ + +     +   +    R  +     L Q  +++ +  ++  
Sbjct: 180 MKSFQALQDKFEREKEQALEKLRQEHQKEIQLLEQRFSESQLLNLEQKYMIEIQRLEEER 239

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                         ++  E+ +            Q L+    +          E +    
Sbjct: 240 K-------------SLKAEKERLGETFEMKLRRAQSLYETELTAAKMLYSKELEALRDH- 285

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            E    ELL + D            ++ +  ++     +  AL KR +    +   I K+
Sbjct: 286 EEALKDELLARQDEFHDRLQELQHQSKRSREELATCKNEVTALEKRLQAKEAELLAISKE 345

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           + +   +         +  L +V  ++ Q + Q
Sbjct: 346 LEEARNETNDS-----LRKLSKVESELQQTKQQ 373


>gi|296209731|ref|XP_002751660.1| PREDICTED: A-kinase anchor protein 9 isoform 2 [Callithrix jacchus]
          Length = 3902

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 91/272 (33%), Gaps = 13/272 (4%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           ++L   +M    ++        D+   + + +      ++D   +    +    R+ +  
Sbjct: 461 KALHKGEMENALQSHPNITVNEDQIKLMNMAINELNIKLQDTNSQKEKLKEELGRILEEK 520

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-KLSKKPSLREAALLLTLINHP 495
                +          +     +   +    +S L +  K        +A ++    +  
Sbjct: 521 CALQRQLEDLFEELSFSREQIQRARQTVAEQESKLNEAHKSLSTVEDLKAEIVSASESRK 580

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL---CERGFGELLKQ 552
            +  +   E+ + +     L+K  + +     E +    E +  +L    E    +L + 
Sbjct: 581 ELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKED 640

Query: 553 LDRQVRD-----AGLWSATTEANIVDVRQGYQQALALYK--RFRLLSRQKEEIEK--QIA 603
           L+ + R          S   +  I  ++    Q +   +  +  L+++Q + I +  ++ 
Sbjct: 641 LEIEHRINIEKLKDNLSIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLK 700

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +       K+  +   ++E+  +I  +  +E
Sbjct: 701 DLQQSLVNSKSEEMTLQINELQKEIEILRQEE 732


>gi|307548894|ref|NP_001182585.1| myosin-3 [Oryctolagus cuniculus]
          Length = 1940

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 83/255 (32%), Gaps = 13/255 (5%)

Query: 389  ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
            E + +     +E  +L+ + +  +  ++        S+    R+++  +  + E      
Sbjct: 1572 EIDRKIAEKDEEMEQLKRNYQRTVETMQSALDAEVRSRNEAIRIKKKMEGDLNEIEIQLS 1631

Query: 449  YWKKNARHRDQKGPSQRLMQSSLV---KGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
            +  + A    +   S +             L  +  L+E   L  +     +LQ + +EL
Sbjct: 1632 HANRQAAETLKHLRSVQGQLKDTQLHLDDALRGQEDLKEQ--LALVERRANLLQAEVEEL 1689

Query: 506  ADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
                      +KL    L       +    +       ++     L QL  +V DA   +
Sbjct: 1690 RATLEQTERARKLAEQELLDANERVQLLHTQNTSLIHTKKKLETDLTQLQSEVEDASRDA 1749

Query: 565  ATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKGEAEKTAIL--- 617
               E                 K+ +     L R K+ +E+ +  +  + +  +   L   
Sbjct: 1750 RNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGG 1809

Query: 618  ISILHEVHIQIHQIE 632
               + ++  +I ++E
Sbjct: 1810 KKQIQKLETRIRELE 1824



 Score = 37.2 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 80/261 (30%), Gaps = 22/261 (8%)

Query: 380  PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-QKLRYYYSQAIRDRLQQLFQK 438
                  + ++ E       +E            +   D   LR  Y +      +   Q+
Sbjct: 1303 SRSKQAFTQQVEELKRQLEEESKAKSALAHALQSSRHDCDLLREQYEEE--QEAKAELQR 1360

Query: 439  YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
             +++ +     W+        +   +       +  +L       EA             
Sbjct: 1361 ALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDSEEQVEAVNAKCASLE-KTK 1419

Query: 499  QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            Q    E+ D+  D      L + L     ++K    +++      +   E   +L+  ++
Sbjct: 1420 QRLQGEVEDLMVDVERANSLAAAL-----DKKQRNFDKVLAEWKTKC-EESQAELEASLK 1473

Query: 559  DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
            ++   S           +   Q   + +  + L ++  ++ +QIA+              
Sbjct: 1474 ESRTLSTELFKLKNAYEEALDQLETVKRENKNLEQEIADLTEQIAENGKT---------- 1523

Query: 619  SILHEVHIQIHQIESQEAMIE 639
              +HE+     Q+E ++A I+
Sbjct: 1524 --IHELEKSRKQMELEKADIQ 1542


>gi|281348813|gb|EFB24397.1| hypothetical protein PANDA_001284 [Ailuropoda melanoleuca]
          Length = 1230

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/94 (10%), Positives = 33/94 (35%), Gaps = 1/94 (1%)

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                       +   V       A  + +  +  +   Q   L  R + L  + +  EK+
Sbjct: 922  EPEDGERCEDMVATVVIKLQGVQAMYQLSQEEHNRLQDQMRKLLDRQKELKEELDACEKE 981

Query: 602  IAQ-VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              + + +  +   +   ++ + E+  ++ +++ Q
Sbjct: 982  FKECMESLEKPTASPADMNEIRELQARLRELQLQ 1015


>gi|156977666|ref|YP_001448572.1| hypothetical protein VIBHAR_06454 [Vibrio harveyi ATCC BAA-1116]
 gi|156529260|gb|ABU74345.1| hypothetical protein VIBHAR_06454 [Vibrio harveyi ATCC BAA-1116]
          Length = 457

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 77/217 (35%), Gaps = 11/217 (5%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
              +Q L Q  + E +     + +      Q  P+    +S+ +  +   +  L +A LL
Sbjct: 83  SKVIQALEQGEVVEINVRNGQFVRQGDVLIQLNPAGANAESTRL-SEQHVRYQLNKARLL 141

Query: 489 LTLINHP--AILQEQYQELADIRYDNNELQKLWSF---LFSDFVEQKYFLPEEIHQRLCE 543
             L  +P  +    +    A I      LQ  +     +      ++     E+     +
Sbjct: 142 ALLSPNPMQSFTPPREATPAQITASQQHLQSEYQETQQMLERLNAERDVNRAELEA--NQ 199

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +G   L K     V       A  E+N +      +Q        R +S    + ++ I 
Sbjct: 200 QGIQALNKLKQNIVTRLHARRALMESNAIARVDLLEQEKEWLDVERDISNM--QAQQAIL 257

Query: 604 QVTAKGEAEKTAILISILH-EVHIQIHQIESQEAMIE 639
           +  A    E+   L++    E + +++QI+ Q A IE
Sbjct: 258 KAKASSLVEQRETLLAQKRLEYYDELNQIDGQIAEIE 294


>gi|27692771|gb|AAH41796.1| Myh14 protein [Mus musculus]
          Length = 781

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 71/252 (28%), Gaps = 20/252 (7%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           RE ++      + R   E          + ++     ++ +  RL +  +          
Sbjct: 166 RELQSTQAQLSEWRRRQEEEAAVLEAGEEARRRAAREAETLTQRLAEKTEAVERLERARR 225

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
           R  ++        G  ++L+ +   K +   +    E A +L  +     ++ + +E   
Sbjct: 226 RLQQELDDATVDLGQQKQLLSTLEKKQRKFDQLLAEEKAAVLRAVEDRERIEAEGREREA 285

Query: 508 IRYD---------------NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                                + + L + L +    +              +   +    
Sbjct: 286 RALSLTRALEEEQEAREELERQNRALRAELEALLSSKDDVGKNVHELERARKAAEQAASD 345

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQ-----QALALYKRFRLLSRQKEEIEKQIAQVTA 607
           L  QV +        E   + +    Q         L  R      ++ ++ KQ+     
Sbjct: 346 LRTQVTELEDELTAAEDAKLRLEVTVQALKAQHERDLQGRDDAGEERRRQLAKQLRDAEV 405

Query: 608 KGEAEKTAILIS 619
           + + E+    ++
Sbjct: 406 ERDEERKQRALA 417


>gi|125987844|sp|P79293|MYH7_PIG RecName: Full=Myosin-7; AltName: Full=Myosin heavy chain 7; AltName:
            Full=Myosin heavy chain slow isoform; Short=MyHC-slow;
            AltName: Full=Myosin heavy chain, cardiac muscle beta
            isoform; Short=MyHC-beta
 gi|12060489|dbj|BAB20630.1| myosin heavy chain slow isoform [Sus scrofa]
          Length = 1935

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1566 NQIKAEMERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1626 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1685

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      E    +L  +++  V
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMEADLSQLQTEVEEAV 1745

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1746 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1806 KGGKKQLQKLEARVRELENELEAEQKRNA 1834


>gi|114319840|ref|YP_741523.1| chromosome segregation protein SMC [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226234|gb|ABI56033.1| chromosome segregation protein SMC [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 1168

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 12/106 (11%)

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
           PEE+   L E     + K+  R+       +      + DVR+  ++ L   +R   ++R
Sbjct: 157 PEELRVYLEEAAGISIYKERRRETERRIRDTRENLERLEDVREEVRRQLEKLRRQAEVAR 216

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMI 638
           +  E+++         E +  A LI++    +  Q+ +   QEA+I
Sbjct: 217 RYRELKQA--------ERDTRAELITLRQASLKAQLEE---QEAVI 251


>gi|110638612|ref|YP_678821.1| ABC transporter ATP-binding protein [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281293|gb|ABG59479.1| ABC transporter, ATP-binding protein [Cytophaga hutchinsonii ATCC
           33406]
          Length = 632

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 37/81 (45%)

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           +++   A    A   A   ++++  QQ   L ++   L ++K   E+ +A+    G  ++
Sbjct: 542 EKKEPVAEKKKAPAPAADPEIKKIQQQISRLEEQITALEKKKTAAEEHLAKPEVYGNPDQ 601

Query: 614 TAILISILHEVHIQIHQIESQ 634
            A       +V  ++ Q++++
Sbjct: 602 LAKASMEFDKVDKELLQLQTE 622


>gi|323493233|ref|ZP_08098362.1| cell division protein MukB [Vibrio brasiliensis LMG 20546]
 gi|323312499|gb|EGA65634.1| cell division protein MukB [Vibrio brasiliensis LMG 20546]
          Length = 1485

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 13/220 (5%)

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            D K +   SQ +  +        I  +          A+  + +    +L ++     + 
Sbjct: 857  DSKEQQQRSQLLASKQALTALDKIAPNMALIEDQALPAQFEELELNLAKLTEAKAYVTRH 916

Query: 477  SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF---SDFVEQKYFL 533
             K  +  E  ++  L   P          AD +  + +LQ+L + +F        + YF 
Sbjct: 917  GKALAELEK-IVSALEADPEQFDALE---ADYQAADQKLQQLKTQIFALADLVERRHYFA 972

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR---QGYQQALALYKRFRL 590
              +    L +    EL +QL  ++ +A      +   +   +     Y Q LA  K    
Sbjct: 973  YSDSVDLLNQS--SELSEQLKAKLVEAERMRTRSRDELKQAQGQMNQYNQVLASLKSSHQ 1030

Query: 591  LSRQ-KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
               +  +E ++++ +     +       +    E+  ++H
Sbjct: 1031 AKLETVQEFKQELQEYGVTADEGAAERAMRRRDELQERLH 1070


>gi|322821819|gb|EFZ28035.1| hypothetical protein TCSYLVIO_5742 [Trypanosoma cruzi]
          Length = 566

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 17/103 (16%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                 ELLK+L+          A + A    +   Y+    L +R   L +Q  +++ Q
Sbjct: 317 TSNAVEELLKRLEES-------RAESNAREEALNALYEDVHFLRERNNQLEQQLADVDAQ 369

Query: 602 IAQVTAK---------GEAEKTAILISILHEVHIQIHQIESQE 635
           + Q+  +          E  +   L+  L  V  Q+ + + +E
Sbjct: 370 LEQLRLEMMMTQDECRLEKGRNRELMEQLECVQQQLQR-QGRE 411


>gi|299756639|ref|XP_001829484.2| dynactin [Coprinopsis cinerea okayama7#130]
 gi|298411766|gb|EAU92444.2| dynactin [Coprinopsis cinerea okayama7#130]
          Length = 1260

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 70/212 (33%), Gaps = 18/212 (8%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-AALLLT 490
           L    +    E  G      +++    Q       ++ +L++ +   + + +E    +  
Sbjct: 375 LDVENKVLKGEAEGSADTPARDSLAFMQLEKQNERLKEALIRLRDVSQETDQEQRRRIAE 434

Query: 491 LINH----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
           +         +  +  + L  +    +E++ L   +            E++  +L ER  
Sbjct: 435 MEKDVATLDELQGQYEETLIKLSNAESEIESLKLQIDDALGA------EDLLVQLTERNL 488

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            EL ++++          A  E N        +    L++       Q  E  ++IA + 
Sbjct: 489 -ELGEKIEEMRITIEDLEALKELNDELEENHIETEKQLHEDIEARDMQLHESARKIAALE 547

Query: 607 AKGEAEKTAILISILHE----VHIQIHQIESQ 634
                +     I+   E    +  ++ Q+ +Q
Sbjct: 548 ES--CQDYEATITKFRELVLQLQSELEQLRAQ 577


>gi|291394112|ref|XP_002713622.1| PREDICTED: ralA binding protein 1 [Oryctolagus cuniculus]
          Length = 643

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 79/255 (30%), Gaps = 36/255 (14%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-----QAIRDRLQQLFQKYI---- 440
            +  +             L      IK++  R  +      + ++  ++ L ++      
Sbjct: 368 LKQVTKPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGIKDLSKEERLWEV 427

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
                  +   + A+ ++ +    + + S   +    ++ +  E  + + L     IL E
Sbjct: 428 QRILTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVINILLAQENEILTE 487

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           Q + LA  ++       L   + S                  +     L  ++       
Sbjct: 488 QEELLAMEQF-------LRRQIAS-----------------EKEEIERLRAEIAEIQSRQ 523

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ---IAQVTAKGEAEKTAIL 617
               + TE    D     +    L      L RQ EE+E +   + Q   +G A  ++ L
Sbjct: 524 QHGRSETEEYSSDSESESEDEEELQIILEDLQRQNEELEIKNNHLNQAIPEGAARPSSKL 583

Query: 618 ISILHEVHIQIHQIE 632
              L  + +Q  + E
Sbjct: 584 RVQLRLLQMQRAKGE 598


>gi|257153463|ref|NP_001158011.1| disrupted in schizophrenia 1 protein isoform c [Homo sapiens]
 gi|238066709|gb|ACR40062.1| disrupted in schizophrenia 1 isoform 26 [Homo sapiens]
          Length = 755

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 95/354 (26%), Gaps = 45/354 (12%)

Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390
              + DL             +      DP S        A       S       W    
Sbjct: 271 TRVSADLAQAARNSSRPERDMHSLPDMDPGSSSSLDPSLAGCGGDGSSGSGDAHSWDTLL 330

Query: 391 ENRSFNTPDERAELEIHLKNCINHIK------DQKLRYYY--SQAIRDRLQQLFQKYITE 442
                   D        ++     +K      D      Y  ++ ++ RL+ L Q+ I+ 
Sbjct: 331 RKWEPVLRDCLLRNRRQMEVISLRLKLQKLQEDAVENDDYDKAETLQQRLEDLEQEKISL 390

Query: 443 HSGYGRYWKKNARH----RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL--------- 489
           H          +        Q   + R   +    G  +  P   E  LL          
Sbjct: 391 HFQLPSRQPALSSFLGHLAAQVQAALRRGATQQASGDDTHTPLRMEPRLLEPTAQDSLHV 450

Query: 490 ------TLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYF--LPEEIHQR 540
                  L+     LQ++ + L    +      Q+L   +     + ++       +  +
Sbjct: 451 SITRRDWLLQEKQQLQKEIEALQARMFVLEAKDQQLRREIEEQEQQLQWQGCDLTPLVGQ 510

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL---------- 590
           L      E+ K L   +  AG      E     +R   ++  +L    +           
Sbjct: 511 LSLGQLQEVSKALQDTLASAGQIPFHAE-PPETIRSLQERIKSLNLSLKEITTKVCMSEK 569

Query: 591 ----LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
               L ++  +IE Q+  +        +        ++  +I  + S+   +EG
Sbjct: 570 FCSTLRKKVNDIETQLPALLEAKMHAISGNHFWTAKDLTEEIRSLTSEREGLEG 623


>gi|242001164|ref|XP_002435225.1| myosin heavy chain, putative [Ixodes scapularis]
 gi|215498555|gb|EEC08049.1| myosin heavy chain, putative [Ixodes scapularis]
          Length = 1019

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 33/341 (9%), Positives = 97/341 (28%), Gaps = 26/341 (7%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           +        A   + +    L  GN       S  +D     +C       + ++     
Sbjct: 336 EARQKDKELADAVMIMRRYELAHGNAPRQPSPSEVDDISLLSQCTSLAHLYRDLMNERSD 395

Query: 382 VDMLWKRETENRSFNTPDERAEL---EIHLKNCINHIK--DQKLRYYYSQAIRDRLQQLF 436
                ++ +  +     +        E      +N +   D +L+    +   +  Q + 
Sbjct: 396 WKTRVEKLSAEKIEIIEEVAGRAASNEQRYNELLNQLSSTDPELKEGLLRLDAEAKQIMD 455

Query: 437 QKYITEHSGYGRYWKKN--ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
           ++            ++        ++     L    +++     +    E   L      
Sbjct: 456 REVALRRRCAVLENERALLQSEISRQTSLSFLKDDIILEQLGQVEMLTEERENLKIATTS 515

Query: 495 PAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG-----F 546
             +  +  +EL   A     + E   L +      +         +     ++      +
Sbjct: 516 IQVKDKIIEELKSAAPEIRSDEEANDLSNDKLKRSLHTAMVTVNSLQALHDQKECTLTRY 575

Query: 547 GELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKRFRLLSRQKEEI-----EK 600
            EL+  L  ++       A   + +  ++ + ++Q++   K        K ++     +K
Sbjct: 576 RELVSSLREEMSKDRARFAKEISGLQTELMKEHRQSILSLKEATSGLHAKGDLSEECSKK 635

Query: 601 QIAQVTAKGEA-----EKTAILISILHEVHIQIHQIESQEA 636
           Q+ ++     A     E        L     ++ +++ + A
Sbjct: 636 QLDEIRRLKNAVAERHEAAVEATEKLKLREQELRRLQQEMA 676


>gi|213403584|ref|XP_002172564.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP2
           [Schizosaccharomyces japonicus yFS275]
 gi|212000611|gb|EEB06271.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP2
           [Schizosaccharomyces japonicus yFS275]
          Length = 1023

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 64/223 (28%), Gaps = 15/223 (6%)

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R      + +   +L ++   E S +     K  R  +      R+ ++   +   S  
Sbjct: 40  ERDLRQAQMLNSSYKLLEEEPDEVSTHLTKRIKKRRPEESSNARNRVRRNRDGREWESDD 99

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               E A      +  +  +E        R  +   +     +     E+      +  +
Sbjct: 100 EEYEETA------SSHSHTREHDDRAGSERSRSQFTRASLDEIDEGDGERDVQERADFEE 153

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-------FRLLS 592
           RL +R      ++              +   IVD     ++A+   ++            
Sbjct: 154 RLRKRDVEREAQKFVEDHSSKLSAEQQSLKKIVDDPDALREAIPELRKVSRRNYLKLREQ 213

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           ++ E + ++I         E+       + E+  +   +   E
Sbjct: 214 QRLEILRREIQDEEKLFAGERLTK--REIQELERKKELLRLAE 254


>gi|153939381|ref|YP_001392471.1| TP901 family phage tail tape measure protein [Clostridium botulinum F
            str. Langeland]
 gi|152935277|gb|ABS40775.1| phage tail tape measure protein, TP901 family [Clostridium botulinum
            F str. Langeland]
          Length = 1826

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 49/125 (39%), Gaps = 14/125 (11%)

Query: 509  RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSAT 566
             Y +   Q + + L   + ++     E I+ ++   E+   E +K++D  V DA + +  
Sbjct: 1544 DYIDKFKQDIANALKERYEDELKLQEESINSQIQNLEKWKDESIKRID-DVYDAKIKAIE 1602

Query: 567  TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGEAEKTAILISILHEVH 625
             +    D      + +          ++   ++  I  +     +AE    L ++L E  
Sbjct: 1603 EQLEEEDKADKDAEEM----------KKINSLKSAIDFEHNEFNKAEMQQELNNLLKERE 1652

Query: 626  IQIHQ 630
             ++H+
Sbjct: 1653 KRLHR 1657


>gi|123426408|ref|XP_001307029.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121888635|gb|EAX94099.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 1365

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/283 (9%), Positives = 90/283 (31%), Gaps = 21/283 (7%)

Query: 366  YGKTAFEKLIVES--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
                  + L+ ++   P +D     +       + +     E       + I ++++   
Sbjct: 781  EKIEKVQNLLRQASTEPSIDKDLLFKCLGILSESSEFPDLDEEEDFPEKSAIPNKQI-ED 839

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            Y +A+ +++ Q+       +  Y  +  +  ++          +  S ++ + S+   + 
Sbjct: 840  YIKALENKIHQILANQDQVNEEYSSHVSQLVKNVQDLQDENSKLHESRLESENSQIEKIG 899

Query: 484  E-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E    + +L      L  +++ + +   +   L +       +  E +     ++ + L 
Sbjct: 900  ELEEEIESLKEQLETLLTEHKNIKEENANLKNLNEEQMKHIGEIGELREKEKSQLKKELE 959

Query: 543  E------RGFGELLKQLDRQVRDAG-----LWSATTEANIVDVRQGYQQALALYKRFRLL 591
            +            +  L + + +          A  +    DV++         KR   +
Sbjct: 960  DKYQKEMEELQTAINDLQKLIEEKENTTKEQMKALQDQAKEDVKRLQTDVEIQTKRANEI 1019

Query: 592  SRQ----KEEIEKQIAQVT--AKGEAEKTAILISILHEVHIQI 628
                     ++  ++++         ++     S L E+  Q+
Sbjct: 1020 RGHYEPILADLRTKLSESRTHENNSQDELLRTTSELKELKSQL 1062



 Score = 37.2 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 93/257 (36%), Gaps = 15/257 (5%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQAIRDRLQQLFQKYIT 441
                 E +  + +  ++  +    L N   ++++   +     + +++ L+Q   +   
Sbjct: 740 MKTMSNELQRLNNSINEKIEDATFELNNKNMNLENDNQKLSEKIEKVQNLLRQASTEPSI 799

Query: 442 EHSGYGR---YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
           +     +      +++   D         +S++   ++       E  +   L N   + 
Sbjct: 800 DKDLLFKCLGILSESSEFPDLDEEEDFPEKSAIPNKQIEDYIKALENKIHQILANQDQVN 859

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQV 557
           +E    ++ +  +  +LQ   S L    +E +    E+I +   E     E L+ L  + 
Sbjct: 860 EEYSSHVSQLVKNVQDLQDENSKLHESRLESENSQIEKIGELEEEIESLKEQLETLLTEH 919

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
           ++    +A  +    +  +   +   L        ++K +++K++     K    +   L
Sbjct: 920 KNIKEENANLKNLNEEQMKHIGEIGELR------EKEKSQLKKELEDKYQK----EMEEL 969

Query: 618 ISILHEVHIQIHQIESQ 634
            + ++++   I + E+ 
Sbjct: 970 QTAINDLQKLIEEKENT 986


>gi|119573820|gb|EAW53435.1| cingulin, isoform CRA_b [Homo sapiens]
          Length = 1062

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 98/288 (34%), Gaps = 28/288 (9%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
             +   +        ++       W  E E  S      + E++   +       ++    
Sbjct: 738  YKEKARREVADAQRQAKD-----WASEAEKTSGGLSRLQDEIQRLRQALQASQAERDTAR 792

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
               + +  RLQ L Q+   +        ++     ++    +  +       +L      
Sbjct: 793  LDKELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEKVSRLETELDEEKNTVELLTDRVN 852

Query: 483  REA----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDFVEQ 529
            R       L   L+   +  Q+   +   +   N +L+ +L S           S    Q
Sbjct: 853  RGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQ 912

Query: 530  KYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
               L E +     E+       ++L+R+V++  +       ++ D +        L  R 
Sbjct: 913  NQLLQERLQAEEREKTVLQSTNRKLERKVKELSIQIEDERQHVNDQKDQ------LSLRV 966

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635
            + L RQ +E E++I ++   G  +K    +   HEV+ Q+  +I+S E
Sbjct: 967  KALKRQVDEAEEEIERLD--GLRKKAQREVEEQHEVNEQLQARIKSLE 1012


>gi|26330708|dbj|BAC29084.1| unnamed protein product [Mus musculus]
          Length = 756

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 98/288 (34%), Gaps = 39/288 (13%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD---- 430
           + E     +     E +        E  +        +  ++DQ     Y   +      
Sbjct: 190 MSEKQIKQENNHLMEMKMNLEKQNTELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 249

Query: 431 ----------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
                     +L +  Q+   +                 K  S++L +S   +    L K
Sbjct: 250 ELKEENEEKTKLCKELQQKKQDLQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 309

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 310 EKIMKELEIKEMMARHKQELTEKDTTIASLE---ETNRTLTSDVANLANE-----KEELN 361

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
            +L +    E L +L  +   A    A  E  +++ R    QA+     +  R   + R 
Sbjct: 362 NKLKDS--QEQLSKLKDEEMSAAAIKAQFEKQLLNERTLKTQAVNKLAEIMNRKEPVKRG 419

Query: 594 -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 420 SDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 464


>gi|326933627|ref|XP_003212902.1| PREDICTED: liprin-alpha-2-like [Meleagris gallopavo]
          Length = 1200

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/281 (7%), Positives = 69/281 (24%), Gaps = 40/281 (14%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
                +       +        +      + D   +    Q    R     ++   E   
Sbjct: 158 LFEHHKALDEKVRERLRASLERVATLEEQLVDAHRQVAALQQGATREAPATERDEREPKE 217

Query: 446 YGRYWKKNARHRDQKGPSQRLMQ----SSLVKGKLSKKPSLRE--AALLLTLIN-HPAIL 498
             +             P     +      L++ +  +    +E  +AL  ++      + 
Sbjct: 218 PAQKLPWKRLSNGSVHPDDEAGRVVELQELLEKQNFEVVQAKEHISALAASVAELEEDLG 277

Query: 499 QEQYQELADIRYDNNELQKLWSFLFS---------------DFVEQKYFLPEEIHQRLCE 543
             +   +      +   + L   L                    +++     +++ +L  
Sbjct: 278 TARKDLIKSEEMSSKYQRDLREALAQKEDMEERITTLEKRYLAAQREATSIHDLNDKLES 337

Query: 544 R------------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL- 590
                             L++L          +      + +V     Q +A   + +  
Sbjct: 338 ELANKESLHRQCEEKARHLQELLELAEQKLQQTMRKAETLPEVEAELAQRIAALTKAKER 397

Query: 591 ---LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
              +     ++E Q+ +   +    +    ++   E + ++
Sbjct: 398 HGSIEEHLRQLESQLEEKNQELARARQREKMNE--EHNKRL 436


>gi|296209729|ref|XP_002751659.1| PREDICTED: A-kinase anchor protein 9 isoform 1 [Callithrix jacchus]
          Length = 3894

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 91/272 (33%), Gaps = 13/272 (4%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           ++L   +M    ++        D+   + + +      ++D   +    +    R+ +  
Sbjct: 461 KALHKGEMENALQSHPNITVNEDQIKLMNMAINELNIKLQDTNSQKEKLKEELGRILEEK 520

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-KLSKKPSLREAALLLTLINHP 495
                +          +     +   +    +S L +  K        +A ++    +  
Sbjct: 521 CALQRQLEDLFEELSFSREQIQRARQTVAEQESKLNEAHKSLSTVEDLKAEIVSASESRK 580

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL---CERGFGELLKQ 552
            +  +   E+ + +     L+K  + +     E +    E +  +L    E    +L + 
Sbjct: 581 ELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKED 640

Query: 553 LDRQVRD-----AGLWSATTEANIVDVRQGYQQALALYK--RFRLLSRQKEEIEK--QIA 603
           L+ + R          S   +  I  ++    Q +   +  +  L+++Q + I +  ++ 
Sbjct: 641 LEIEHRINIEKLKDNLSIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLK 700

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +       K+  +   ++E+  +I  +  +E
Sbjct: 701 DLQQSLVNSKSEEMTLQINELQKEIEILRQEE 732


>gi|238881188|gb|EEQ44826.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1038

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 81/267 (30%), Gaps = 23/267 (8%)

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
           +       +++ +     +     + D  L  +YS           + +        +  
Sbjct: 39  QVYHSYPQEQKTQTSPPRRKLFRPLADSNLAAHYSHD-SGLFDDTVEDFEKLSPIRPQRS 97

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE------------AALLLTLINHP--- 495
               R+R        +   S        + +++E              L+ +L N P   
Sbjct: 98  PIAQRNRRSPDRHDFITDDSGGIAARQSEETIKELRSENYGWKIKYKELIRSLENMPAHE 157

Query: 496 -AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             + +E  Q    +   +  +Q+L S +      ++            E+    +++QL+
Sbjct: 158 REVRKENIQLKEKLATLHQHIQQLESQIAELQNNKENITTNN--NDFREK--DNIIQQLN 213

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            ++ +     ++         +  +   AL      L+ +  E+E  +     + +    
Sbjct: 214 NKIYELQRQLSSENKLKESQLENEEIIQALKSERNELTAKVSELEDYMKHSEVEFDVVMK 273

Query: 615 A--ILISILHEVHIQIHQIESQEAMIE 639
                   +HE+   I  +   EA I+
Sbjct: 274 QNDEFQERIHELEAAIDTLHQTEATIQ 300


>gi|195565825|ref|XP_002106499.1| GD16093 [Drosophila simulans]
 gi|194203875|gb|EDX17451.1| GD16093 [Drosophila simulans]
          Length = 634

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEK 600
            E+   +  ++  +    A   +   +    D  +  Q+ +   +R           +E+
Sbjct: 371 EEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEE 430

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Q+ Q+ A  +  +       L  +  ++ + ++ EA+
Sbjct: 431 QLKQLQAAKDELELRQ--KELQAMLQRLEEAKNMEAV 465



 Score = 37.9 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 94/273 (34%), Gaps = 7/273 (2%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
              K + ++     +           E+          +LE++  N    I+++K    +
Sbjct: 219 DQHKMSKDEWEQSIMTWWQEHRSMLREDAMMEYLKIAQDLEMYGVNYFE-IRNKKGTDLW 277

Query: 425 SQAIRDRLQQLFQKYI-TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                  L    Q    T   G+     +N    ++K   + + + +      + +  + 
Sbjct: 278 LGVDALGLNIYEQDDRLTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRIN 337

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +  L L + NH   ++ +  +  D++    + ++  +    +  + +  L         +
Sbjct: 338 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQ 397

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           + + + LKQ+   +  +       +  I  + +  +Q  A       L  +++E++  + 
Sbjct: 398 QEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEEQLKQLQAA---KDELELRQKELQAMLQ 454

Query: 604 QVTAKGEAEKTA--ILISILHEVHIQIHQIESQ 634
           ++      E      L   +    +++ +I+ +
Sbjct: 455 RLEEAKNMEAVEKLKLEEEIMAKQMEVQRIQDE 487


>gi|297583386|ref|YP_003699166.1| peptidase M23 [Bacillus selenitireducens MLS10]
 gi|297141843|gb|ADH98600.1| Peptidase M23 [Bacillus selenitireducens MLS10]
          Length = 462

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 3/107 (2%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           + L   +   +         E+   L  + FG+L++++      A       + +I D+ 
Sbjct: 119 ELLKERVRQMYQNGGSINYIEVI--LGAQNFGDLIERISALNSIAQQDQNILQEHIEDME 176

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTA-KGEAEKTAILISIL 621
                   L +    L  Q  E+E   + + A   E ++    +S L
Sbjct: 177 SVELAKENLERELMFLEEQLGELESLRSSLEAQSSEKDQYLEELSYL 223


>gi|125838002|ref|XP_001343838.1| PREDICTED: serine/threonine-protein kinase TAO1-like isoform 1
           [Danio rerio]
          Length = 1023

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 57/163 (34%), Gaps = 25/163 (15%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
              +    + + L + L            + + +RL E    +L    ++         +
Sbjct: 731 DACKIQTRQYKALRNHLLE---STPKPEHKTMLKRLKEEQTRKLAILAEQYDHTINNMLS 787

Query: 566 TTEANIVDVRQGYQQALALYKRFRLL-----------------SRQKEEIEKQ--IAQVT 606
           T    + + ++   Q L +  +  L                   R+++E+E++  + +  
Sbjct: 788 TQALRLDEAQEAECQVLRMQLQQELELLNAYQSKIKMQTDAQQERERKELEQRVSLRRAL 847

Query: 607 AKGE-AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            + +  E+   L +   E    + + +++E  IE F   S RL
Sbjct: 848 LETKIEEEMLTLQNERTERIRSLLERQARE--IEAFDSESMRL 888


>gi|115491095|ref|XP_001210175.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114197035|gb|EAU38735.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 682

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 26/220 (11%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA--A 486
              LQ+L  +            K+     +     QR ++       LS +  LRE    
Sbjct: 205 SGELQELRNQVKNLEKELVERDKQLEEQANTLADFQRTLEELEGSDALSIRAQLREKNER 264

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
           +            +    L  +    +E ++++     + ++Q         + L +RG 
Sbjct: 265 IAQLTAEFDLHRADFRSTLDTLEVAASETERVYEQRLDELMQQN--------RELQDRGE 316

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR--------LLSRQKEEI 598
              ++ + RQ++      +  E  + D R+G  +A A  +  R         L +++E  
Sbjct: 317 D--VEAVARQLKQLEELVSELEEGLEDARRGEAEARAEVEFLRGEVERTRLELDKEREST 374

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
             ++    A  +          + E+  +  +I   +A+I
Sbjct: 375 AARLQDAHATPD------NQQHIRELEQKDDEIRGLKAII 408


>gi|72393139|ref|XP_847370.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62176603|gb|AAX70707.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70803400|gb|AAZ13304.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 941

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 73/216 (33%), Gaps = 20/216 (9%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            + LQ    +  TE   +    +   R   Q+  + + +  + ++   ++   L++  L 
Sbjct: 494 AEGLQTTATRLATEMEAFRTECRARERAAAQERQNSQELLRAQLRECTAEVEDLKQRLLQ 553

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             L        E+ +   +I      LQ L +       E K+   +       ER   E
Sbjct: 554 RDL--------EEQRLRDEIALKAQALQNLRTENKRLLEEAKHADDK------REREVTE 599

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----RFRLLSRQKEEIEKQIAQ 604
               L++      L     EA    ++   ++  A YK    R     +  +E  +++ +
Sbjct: 600 CQISLEKNTAALYLQKTQAEAECQRLQHALEEIEARYKACERRLDDERQALKETAEKLQE 659

Query: 605 VTAKGEAEKT--AILISILHEVHIQIHQIESQEAMI 638
                E  K       +   E+  ++ +  S+ A +
Sbjct: 660 SRDAAEESKVAHRRTQTRRQELEEELQRKNSELAAV 695


>gi|895613|gb|AAA69678.1| CASP [Gallus gallus]
          Length = 675

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/276 (10%), Positives = 91/276 (32%), Gaps = 17/276 (6%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435
           + +P +D+  + + + +  +  +   +         N    + K +    +A+ +++++ 
Sbjct: 98  DPVPALDLGQQLQLKVQRMHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALNEKIREY 157

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q    +        ++  ++   +              KL +     +A          
Sbjct: 158 EQTLKNQAENIALEKEQKLQNDLAEKERNLQETQMSTASKLEEAEHKVQALQTALEKTRT 217

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK-- 551
            +   + +   +     +E + + + L   +   E      E + ++L        L   
Sbjct: 218 ELFDLKPKYDEETTAKADEFEMIMTDLERANQRAEVAQREAETLREQLSSANKSLQLATQ 277

Query: 552 -----QLDRQV-----RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600
                 +++ +         +  A  E  I  + +  Q+      + R  S  Q  ++E+
Sbjct: 278 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQGSLTKLRENSSSQISQLEQ 337

Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE 635
           Q+    +  +  E+     +   EV  +++ ++S E
Sbjct: 338 QLTAKNSTLKQLEEKLKGQADYEEVKKELNILKSME 373


>gi|153791586|ref|NP_001093582.1| myosin-2 [Homo sapiens]
 gi|153792663|ref|NP_060004.3| myosin-2 [Homo sapiens]
 gi|13431716|sp|Q9UKX2|MYH2_HUMAN RecName: Full=Myosin-2; AltName: Full=Myosin heavy chain 2; AltName:
            Full=Myosin heavy chain 2a; Short=MyHC-2a; AltName:
            Full=Myosin heavy chain IIa; Short=MyHC-IIa; AltName:
            Full=Myosin heavy chain, skeletal muscle, adult 2
 gi|4808813|gb|AAD29950.1| myosin heavy chain IIa [Homo sapiens]
 gi|116497217|gb|AAI26410.1| Myosin, heavy chain 2, skeletal muscle, adult [Homo sapiens]
 gi|119610409|gb|EAW90003.1| myosin, heavy polypeptide 2, skeletal muscle, adult [Homo sapiens]
          Length = 1941

 Score = 39.1 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1567 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHIRIVESMQSTLDAEIRSRNDAIRLKKKMEG 1626

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1627 DLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQIHLDDAL-----RSQEDLKEQ--LAM 1679

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1680 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1739

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1740 ISQMQGEMEDILQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1799

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1800 QLRLDEAEQLALKGGKKQIQKLEARVRELEGE 1831


>gi|295401146|ref|ZP_06811119.1| Peptidase M23 [Geobacillus thermoglucosidasius C56-YS93]
 gi|294976739|gb|EFG52344.1| Peptidase M23 [Geobacillus thermoglucosidasius C56-YS93]
          Length = 432

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 76/222 (34%), Gaps = 10/222 (4%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + I+++   +      + +   +    + + +  +   + L           ++ S +  
Sbjct: 24  REIQEKRDAINDIRSKQSAVQDKINNADQQIQQLQTQQKSLSAEIKKLDLAVEETSGKIR 83

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
           +L   +      ++   +E+A+++    +  ++         E        +   L  + 
Sbjct: 84  SLSADIQQTEQAVETLKREIAEVQARIEKRNEILKERVRSLQESGGV-ISYLEVLLGSQS 142

Query: 546 FGELLKQLDRQ--VRDAGLWSATTEANIVDVRQGYQQAL-----ALYKRFRLLSRQKEEI 598
           F + + ++     + +A       +     +++  ++ L      L    + L + K+ +
Sbjct: 143 FSDFIDRISAVTTIFEADKQIIREQQADKALKEKKEKELTDKLSRLQADLKELEQLKQTL 202

Query: 599 EKQIAQVTA--KGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            +QI Q         +K      +  E+  +   ++ QEA +
Sbjct: 203 NEQINQKNQLMANLKQKEQEHYELKMELAEEQELLKKQEAAV 244


>gi|271500770|ref|YP_003333795.1| chromosome segregation and condensation protein MukB
           domain-containing protein [Dickeya dadantii Ech586]
 gi|270344325|gb|ACZ77090.1| chromosome segregation and condensation protein MukB domain protein
           [Dickeya dadantii Ech586]
          Length = 1478

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 87/301 (28%), Gaps = 24/301 (7%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D           +  + +   +       E  +      +E  E             D  
Sbjct: 329 DYQAASDHLNLVQTAMRQQEKIERYNADLEELSYRLEEQNEVVEEARDQLEENEARADAA 388

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +      ++ +L    Q    + +   +Y +        +   Q    ++    +    
Sbjct: 389 EQE--VDELKSQLADYQQALDVQQTRAIQYQQAQQALERARSLCQVPELTADNADEWLDS 446

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIH 538
              +E      L+          Q+L+     N++ ++ +  +        +    +   
Sbjct: 447 FQAKEQEATELLLM-------LEQKLSVADAANSQFEQAYQLVCRIAGAVSRSEAWDVAR 499

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR---LLSRQK 595
           + L +      L +  + +R              D  +  Q+ +    +      L   +
Sbjct: 500 ELLRDSSSQRYLAEQVQPLRMRVSELEQRRREQQDAERLLQEFIKRSGQDYQPEDLDDLQ 559

Query: 596 EEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIE--------SQEAMIEGFGKMS 645
           +E+E +I  ++ +     E    L   L ++  +I Q+         +QEA+    G+ S
Sbjct: 560 QELEARIEDLSVRVSEAGEHRLALRQELEQIQQRIAQLTTRAPVWLAAQEAL-TQLGEQS 618

Query: 646 G 646
           G
Sbjct: 619 G 619


>gi|253745726|gb|EET01462.1| Spindle pole protein, putative [Giardia intestinalis ATCC 50581]
          Length = 1032

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 78/217 (35%), Gaps = 7/217 (3%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-E 484
           + I   LQ +     + ++          ++  +       + S L+K     +  +  +
Sbjct: 142 KQIYTLLQSMNGANESINTQVMEGLTNLRQNMAKVIDDNNTLNSELMKLHEENQQKIAMQ 201

Query: 485 AALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           A L+  L      ++   + +      +  + +++ ++L     E +      + +R  +
Sbjct: 202 AHLVSLLEKREQEIENLKEAIKHSEDMEGKKNEEIRTYLLK-CDEIRSLSERTLRER--D 258

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI--EKQ 601
               EL  ++     D  L  A  +    ++ +   +      +   L+ +   +    +
Sbjct: 259 TVLDELKTKMSNTTADYKLLEAEADRTSRELIECKARLQTAESQVISLNSKLTALASTSE 318

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
            A +  + E EK  + IS L E+   +++ +  EA I
Sbjct: 319 TALLRKESEVEKLELEISNLKEIIQSLNEEKRNEADI 355


>gi|168181360|ref|ZP_02616024.1| acyl-coA dehydrogenase [Clostridium botulinum Bf]
 gi|182675483|gb|EDT87444.1| acyl-coA dehydrogenase [Clostridium botulinum Bf]
          Length = 645

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 56/145 (38%), Gaps = 19/145 (13%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           ++ + +EL    +++++ +KL   +     E K                   ++ L++++
Sbjct: 372 IEAKREELEG-NFNSDKAKKLKENI----AEGKSVAT-------KIEELKNQIESLNKKI 419

Query: 558 RDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            D     A  + +   + +    +Q  +   +  + + ++   IE QI         E T
Sbjct: 420 EDEKNMLAVAQKSLVVLQNKLNNFQTDMEEPEEIKYIKQEIYNIESQIQSYR----KEDT 475

Query: 615 AILISILHEVHIQIHQIESQEAMIE 639
             L +   E+  Q+ +++ Q A  E
Sbjct: 476 TELNNKKEELQEQLRELDKQLAHKE 500


>gi|121701165|ref|XP_001268847.1| nuclear segregation protein (Bfr1), putative [Aspergillus clavatus
           NRRL 1]
 gi|119396990|gb|EAW07421.1| nuclear segregation protein (Bfr1), putative [Aspergillus clavatus
           NRRL 1]
          Length = 506

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 + +L++QV    +     +  + DV    ++    +           +++ QIA
Sbjct: 119 EELDREIVRLEKQVDSGTMRLVDEKKALADV-STLRKQRKNFASLEEAQNVINDLKAQIA 177

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +    +  +   L     E+  ++  I++++
Sbjct: 178 SLKKTLDNPEAKALSDKYTEIQKELDAIKAEQ 209


>gi|118376318|ref|XP_001021341.1| hypothetical protein TTHERM_00316490 [Tetrahymena thermophila]
 gi|89303108|gb|EAS01096.1| hypothetical protein TTHERM_00316490 [Tetrahymena thermophila
           SB210]
          Length = 598

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 57/165 (34%), Gaps = 18/165 (10%)

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
            +   +Q     + +++    + + L         E++    E       E    +L + 
Sbjct: 17  QNEDKVQSVKNLITNLKLQLEQEKMLRQEDLQLLQEEQSKFKE------SENTIIQLQES 70

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL---------SRQKEEIEKQIA 603
           + RQ           EA    V +   Q          +          +  E+++ Q+ 
Sbjct: 71  IQRQNIQIEQLEYKNEALQRKVDELLIQVNQKKNNAGGIFSGIFNGKQKQMMEQLQSQLQ 130

Query: 604 QVTAKG--EAEKTAILISILHEVHIQIH-QIESQEAMIEGFGKMS 645
           Q   +   + E+T  L   L+E+  +++ +IE     IE + ++S
Sbjct: 131 QCEEELQIKTEETERLHEHLYELKKELNSKIEQLNGSIEQYKQVS 175


>gi|74219697|dbj|BAE29614.1| unnamed protein product [Mus musculus]
          Length = 574

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 99/318 (31%), Gaps = 32/318 (10%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D      A   ++L                  G+   +  R     A       +L    
Sbjct: 93  DSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTAL 152

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              KR  E    +   + A+LE  L      ++D+ LR        +RLQ L ++   + 
Sbjct: 153 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTLKEELDFQK 208

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
           + Y    ++  R  + +       +    + +L+                   +  +   
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 254

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562
           ++   +    EL+K +S    +  +        +     E     + +  L  Q+     
Sbjct: 255 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 311

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
             A  EA + D+     +     +R      R+  E+  ++ Q     + ++   L+ I 
Sbjct: 312 QLAAKEAKLRDLEDSLARERDTSRRLLAGKEREMAEMRARMQQ-----QLDEYQELLDIK 366

Query: 622 HEVHIQIHQ----IESQE 635
             + ++IH     +E +E
Sbjct: 367 LALDMEIHAYRKLLEGEE 384


>gi|67605133|ref|XP_666664.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54657703|gb|EAL36436.1| hypothetical protein Chro.40063 [Cryptosporidium hominis]
          Length = 1343

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 73/234 (31%), Gaps = 20/234 (8%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL-FQKYITEHSGYGRYWKKNARHR 457
           ++  +L       +   K    R      +   +  L  +  + E S   R  K   +  
Sbjct: 696 EKENKLIDRENKLMEKEKGLLEREMGLNDLEREMSSLGQRTKLVEESLLAREVKIEEKEN 755

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
             +     L +   +  +  +    REA L         +  E      ++     +LQ 
Sbjct: 756 THRTRESNLGRREAILIERERSMDRREADL-----KERDL--ELKDRERELDEKERQLQL 808

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
               L  + +  +    +   + L  +   +LL++++  ++          +     ++ 
Sbjct: 809 ERKPLLDELIRIEERDKQLFERELAIQRSEDLLQEMEGVIKSREKELYEERSFSNKDKEI 868

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           Y+           L R  E++E +   +  + +     +L   + E   Q  ++
Sbjct: 869 YE-----------LRRMIEDLELRNRDIERETQK-TCQVLQQQIQEEMKQKEEL 910


>gi|325475195|gb|EGC78380.1| nuclease SbcCD [Treponema denticola F0402]
          Length = 748

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 73/212 (34%), Gaps = 18/212 (8%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y +A +  +    QK   + +  G      A  R   G  +RL +++     +    
Sbjct: 380 KKQYDEAFKS-IPSDIQKGNIDDTIEGCNEMIFASDRKISGYEERLKENNDRHTSIKAGL 438

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             R+  L        ++L+E  ++     ++      L   L S  +E+K    EE   +
Sbjct: 439 IQRQEQLAKW---EKSLLEE--EKNLKDSFERKGFSSLKELLDSILLEEKIADFEETITK 493

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             E        ++  +   AGL         +   +   + + L K       +  EI+ 
Sbjct: 494 FKEE-------KITLEHSAAGLKKDIEGKTFIQPEKLEDEIIILQKNLDEEQDRLAEIKS 546

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            + ++      +      S+L+E+  +  + +
Sbjct: 547 SLDKL-----KDLFERRQSLLNELKQRAEEAQ 573


>gi|317137038|ref|XP_003190011.1| nuclear segregation protein (Bfr1) [Aspergillus oryzae RIB40]
          Length = 502

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                 + +L++QV    +     +  + DV    ++    +       +   +I+ QIA
Sbjct: 121 EEIDREIARLEKQVDSGTMRLVDEKKALADV-SSLRKQRKNFAGLDEAQKVINDIKAQIA 179

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +    +  +   L     E+  ++  I++++
Sbjct: 180 ALKKTLDNPEAKALSDKYAEIQKELDAIKAEQ 211


>gi|330907235|ref|XP_003295754.1| hypothetical protein PTT_02685 [Pyrenophora teres f. teres 0-1]
 gi|311332688|gb|EFQ96142.1| hypothetical protein PTT_02685 [Pyrenophora teres f. teres 0-1]
          Length = 2323

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 39/398 (9%), Positives = 102/398 (25%), Gaps = 28/398 (7%)

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300
           + H  + LY           +    +  N      + +      SL Q+  +  +S+   
Sbjct: 138 IIHNQQVLYAPNQVREAPPANQTPSLVINIHQERNVHQ--HAAASLTQSHNRKDISNQNQ 195

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
            L +   R                  G+         +                  +D  
Sbjct: 196 RLEDDDTRH-------------QQVTGVHPTNVTCPQLNDQHELEQVF-PRQPHGVQDVS 241

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC--INHIKDQ 418
                         +  S P+    +    E+      +   +     +          +
Sbjct: 242 LQKMQGTIEFPMAAVPSSEPITTTGFDC-PESNFDEESEYSVDRHNEAREMKAYEEENHR 300

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                    +  + ++L ++ + + +          R+  ++  +QR  +        ++
Sbjct: 301 SEIAMRQAELESKRRELEEQRLAQMNADMDTGVTKQRYAQEQQQAQRPTKPLEGLESNAE 360

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
               +E     + +     L E   E   ++  + + ++    L      Q     EE+ 
Sbjct: 361 FAQSQEFL---SRLKERQRLDELAAEEEALQL-DAQHRQTQEALM-LARAQSIRDEEELE 415

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE- 597
               E    +  +      + A   +   +    +          L  +     R+  + 
Sbjct: 416 AARSEMEERQRQRAAANARQLAFDTAQLRQEYQEEDISQQVPRTRLIDQQYHDQRELAQD 475

Query: 598 -IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             E+ I     + E E    L   L E   ++   ++Q
Sbjct: 476 AQERNILAAQQQAEFEALQAL--KLQEEEQRMADEQAQ 511



 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/276 (9%), Positives = 80/276 (28%), Gaps = 29/276 (10%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           ++ +        +      E         R   E  +      I+D++        + +R
Sbjct: 365 QEFLSRLKERQRLDELAAEEEALQLDAQHRQTQEALMLARAQSIRDEEELEAARSEMEER 424

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM-QSSLVKGKLSKKPSLREAALLLT 490
            +Q       + +      ++  +  D      R          +       +E  +L  
Sbjct: 425 QRQRAAANARQLAFDTAQLRQEYQEEDISQQVPRTRLIDQQYHDQRELAQDAQERNILAA 484

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
                   Q +++ L  ++    E             +++    +E+  R       ++ 
Sbjct: 485 ------QQQAEFEALQALKLQEEE---------QRMADEQAQRDDELAARRANEQARQMQ 529

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--FRLLSRQKEEIE--------- 599
           ++   +           E    + R+  ++     +R   R ++RQ++E           
Sbjct: 530 EESRWEANRQREERRQQELLEKNERKAVERQQRDQQRDNEREINRQRKEERDARKNEERE 589

Query: 600 --KQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             +   +   + +AE  A  +    E+  +   +++
Sbjct: 590 RDQAARREKEERDAEFQAAKMQDDMELKEKRAALKA 625


>gi|229824111|ref|ZP_04450180.1| hypothetical protein GCWU000282_01415 [Catonella morbi ATCC 51271]
 gi|229786465|gb|EEP22579.1| hypothetical protein GCWU000282_01415 [Catonella morbi ATCC 51271]
          Length = 867

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 61/170 (35%), Gaps = 13/170 (7%)

Query: 478 KKPSLREAALLLTLINHPAI---------LQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
           +K    E      L+  P +         L+E+++    +   +N L  + + + S+   
Sbjct: 325 EKDKALERRFQRVLVQEPTVEDTISILRGLKERFEIHHGVNIHDNAL--VAAAILSNRYI 382

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
              FLP++    + E      ++          +     +  I +     +   A  KR 
Sbjct: 383 TDRFLPDKAIDLVDEACATIRVEINSMPTEMDQVNRRLMQLEIEEAALKKEHDEASKKRL 442

Query: 589 RLLSRQKEEIEKQ--IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             L  +  ++ +Q  + ++  + E E +  +     E+    HQ+E  EA
Sbjct: 443 ENLQEELADLREQANMLKMRWEIEKEASNKMRDKRLELEAARHQLEEAEA 492


>gi|225868940|ref|YP_002744888.1| DNA repair protein [Streptococcus equi subsp. zooepidemicus]
 gi|225702216|emb|CAW99951.1| putative DNA repair protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 553

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 85/247 (34%), Gaps = 33/247 (13%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             +     D+L+Q +Q+    +    R   +  ++  +      L+   + +   +    
Sbjct: 147 DSFGDEAFDQLKQSYQQIFDRYKALRRQALEKQKNEKEHQARLDLLAFQIGEIDAADLVR 206

Query: 482 LREAALL----LTLINHPAILQEQYQE---LADIRYDN--------------NELQKLWS 520
             E  LL      L+NH  I          L +  + +               +L   + 
Sbjct: 207 G-EDDLLNQERQRLLNHKKIADTLTSAYLSLDNEDFSSLSQVRSSMNELLSIEDLAPEYQ 265

Query: 521 FLFSDFVEQKYFLPE---EIHQRLCERGFGE-LLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            + +   E  Y L E   ++   + +  F    L+ ++ ++      +      + DV  
Sbjct: 266 LMSAGVSEAYYILEEVTKQLSDTIDQLDFDAGRLQDIELRLDSINSLTRKYGGGVNDVLD 325

Query: 577 GYQQALALYKRF-------RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            Y      Y+           L R+ + +EKQ+    ++   ++ A+ + +  ++  ++ 
Sbjct: 326 YYANITKEYQLLSGGDRSSDELERELKALEKQLVLTASQLSDQRHALALELEADIKAELR 385

Query: 630 QIESQEA 636
           ++  ++A
Sbjct: 386 ELYMEKA 392


>gi|241957281|ref|XP_002421360.1| DNA repair protein, putative; growth, DNA repair, interchromosomal
           and sister chromatid recombination protein, putative;
           structural maintenance of chromosomes (SMC) protein,
           putative [Candida dubliniensis CD36]
 gi|223644704|emb|CAX40694.1| DNA repair protein, putative [Candida dubliniensis CD36]
          Length = 1128

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 33/115 (28%)

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             + +    +     E     +  R   E  +QL  +  +        +           
Sbjct: 373 KAIEAKIPRKNAADQEVKQVEIQIRDIVEEFEQLRSKRSEIKSELEINKKETKKNIDEMN 432

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                  R      Q+    +++     +  AE+   L S + E+  Q+  ++ Q
Sbjct: 433 SLKEDISRTETKIEQERRKIQELQGGNKEKIAEELEQLNSEIDELEKQMEDLKKQ 487



 Score = 38.3 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 67/213 (31%), Gaps = 10/213 (4%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             R     +  +   +    ++      +     +++         +   +    E A+ 
Sbjct: 317 AHRTNDALRNKLEMLNAKIYWFNVQTIEKKISQENRQEDACLQEIKEAKNQVDACEKAIE 376

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +    A  QE  Q    IR    E ++L S       E +    E            E
Sbjct: 377 AKIPRKNAADQEVKQVEIQIRDIVEEFEQLRSKRSEIKSELEINKKETKKNIDEMNSLKE 436

Query: 549 LLKQLDRQVR-DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            + + + ++  +          N   + +  +Q   L      L +Q E+++KQ+ Q+ +
Sbjct: 437 DISRTETKIEQERRKIQELQGGNKEKIAEELEQ---LNSEIDELEKQMEDLKKQLGQIQS 493

Query: 608 KGEAE------KTAILISILHEVHIQIHQIESQ 634
             + E      +       + ++  Q  Q+E +
Sbjct: 494 NPDPELRSVSQQKDKSKQKIADLQNQKRQLEKE 526


>gi|109113269|ref|XP_001113779.1| PREDICTED: myosin-4-like isoform 1 [Macaca mulatta]
          Length = 1939

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 80/277 (28%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +   +   +    +       +      ELE   K     ++D +      
Sbjct: 1352 EEEQEAKAELQRGMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1411

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              +    +  + RLQ   +  + +           + + R+         Q         
Sbjct: 1412 NSKCASLEKTKQRLQNEVEDLMIDVERSNAACIALDKKQRNFDKILAEWKQKYEETQAEL 1471

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            +       +L   L       +E    L  ++ +N  LQ+  S L     E         
Sbjct: 1472 EASQKESRSLSTELFKVKNAYEESLDHLETLKRENKNLQQEISDLTEHIAEGGKH----- 1526

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +A++ +     +       R   +  +  +
Sbjct: 1527 ------------IHELEKVKKQLDHEKSELQASLEEAEASLEHEEGKILR---IQLELNQ 1571

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1572 VKSEIDRRIAEKDEELDQLKRNHLRVVESMQSTLDAE 1608


>gi|70980531|ref|NP_060788.3| coiled-coil domain-containing protein 91 [Homo sapiens]
 gi|296434429|sp|Q7Z6B0|CCD91_HUMAN RecName: Full=Coiled-coil domain-containing protein 91; AltName:
           Full=GGA-binding partner; AltName: Full=p56 accessory
           protein
 gi|119616986|gb|EAW96580.1| hypothetical protein, isoform CRA_b [Homo sapiens]
 gi|119616988|gb|EAW96582.1| hypothetical protein, isoform CRA_b [Homo sapiens]
          Length = 441

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 85/247 (34%), Gaps = 18/247 (7%)

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
                 I   +++   S+  + R++Q  +  + +H+   + + K           +    
Sbjct: 132 IQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKEL 191

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAIL----QEQYQELADIRYD---------NNEL 515
               K +L         AL + +  + A+L    ++Q + +                  L
Sbjct: 192 QEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQYISAIEKQAHKCEELL 251

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRL--CERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
                 L      +K  L E+I + L    +   E+L++   + R     +  + A +  
Sbjct: 252 NAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLE- 310

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIE-KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            ++  + A+         + +K   E +++ +     + EK +  I    +   +I Q  
Sbjct: 311 -KEAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQET 369

Query: 633 SQEAMIE 639
            + A+IE
Sbjct: 370 VKAAIIE 376


>gi|71903987|ref|YP_280790.1| putative cell surface protein [Streptococcus pyogenes MGAS6180]
 gi|94990908|ref|YP_599008.1| cell surface protein [Streptococcus pyogenes MGAS10270]
 gi|71803082|gb|AAX72435.1| putative cell surface protein [Streptococcus pyogenes MGAS6180]
 gi|94544416|gb|ABF34464.1| Cell surface protein [Streptococcus pyogenes MGAS10270]
          Length = 1352

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 72/223 (32%), Gaps = 20/223 (8%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           +L+  ++  +TE          N   R +   + +    +    + + +  L E   +  
Sbjct: 198 KLKADYEAKLTEIKQIESE---NEAIRQRNQQASQATHQANQAAQAAYQEKLAEIERIKA 254

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE---------EIHQRL 541
              + AI     +   +    N  LQ  +    ++  + +              +   + 
Sbjct: 255 --ENAAIRDRNAKAQQEAERQNQALQAAYEAKLAEIKQIESENAAIRQRNEQAGQATNQT 312

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +       ++L    R     +A  + N    ++  +Q  AL   +     + ++IE +
Sbjct: 313 NQAAQAAYQEKLAEIERIKAGNAAIRDRNAKAQQEAERQNQALQAAYEAKLAEIKQIESE 372

Query: 602 IAQVTAKGEA------EKTAILISILHEVHIQIHQIESQEAMI 638
            A +  + E       +      +   E   +I +I ++ A I
Sbjct: 373 NAAIRKRNEQAGQTTNQTNQAAQAAYQEKLAEIERINAENAAI 415


>gi|77458026|ref|YP_347531.1| condensin subunit Smc [Pseudomonas fluorescens Pf0-1]
 gi|77382029|gb|ABA73542.1| putative chromosome partition protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 1162

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIESKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELER 203

Query: 601 QIAQVTAKGEAE-KTAILISILHEVHIQIHQIESQ 634
           Q+ ++  + EA  K     +   ++  Q+  +  Q
Sbjct: 204 QLERLHRQAEAAKKYQEYKAEERQLKAQLSALRWQ 238


>gi|8393807|ref|NP_058936.1| myosin-7 [Rattus norvegicus]
 gi|127748|sp|P02564|MYH7_RAT RecName: Full=Myosin-7; AltName: Full=Myosin heavy chain 7; AltName:
            Full=Myosin heavy chain slow isoform; Short=MyHC-slow;
            AltName: Full=Myosin heavy chain, cardiac muscle beta
            isoform; Short=MyHC-beta
 gi|56657|emb|CAA34065.1| unnamed protein product [Rattus norvegicus]
          Length = 1935

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 98/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1566 NQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1626 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1685

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1745

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +    + +  ++++ ++ +      
Sbjct: 1746 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKNNMEQTIKDLQHRLDEAEQIAL 1805

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1806 KGGKKQLQKLEARVRELENELEAEQKRNA 1834


>gi|325697094|gb|EGD38981.1| DNA repair protein RecN [Streptococcus sanguinis SK160]
          Length = 552

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 84/243 (34%), Gaps = 38/243 (15%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ----KGPSQRLMQSSLVKGKLSKKPSLR 483
           ++ R Q+ F +Y +         K    H+ +    +     +  ++L  G+ +     R
Sbjct: 157 LKGRYQETFDRYRSLRKQVLTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQER 216

Query: 484 EAAL-----------LLTLINHPAI-----LQEQYQELADIRYDNNELQKLWSFLFS--D 525
           +  L             T++++        ++    +L  I   +   ++L   L     
Sbjct: 217 DRLLNHKLIADTLTNAYTMLDNEDFSSLTNVRSAMNDLESIEDYDPAYKELSGSLSETYY 276

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +E      E+I   L   G   L  Q++ ++      +      + DV   + Q    Y
Sbjct: 277 VLEDVSKRLEDILDGLDFDGDRLL--QVESRLDLINSITRKYGGQVDDVLDYFAQISKEY 334

Query: 586 --------------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                         +  + L R+  E+ ++++Q      A+  A +   L +++++  + 
Sbjct: 335 SLLTGSNLSSEDMDRELKALERELVELAQELSQARHGLAAQLEAEIKQELQDLYMEKARF 394

Query: 632 ESQ 634
           + Q
Sbjct: 395 KVQ 397


>gi|319655760|ref|NP_001091647.2| myosin, heavy polypeptide 9, non-muscle [Danio rerio]
          Length = 1961

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 79/227 (34%), Gaps = 19/227 (8%)

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                    +  R+Q++ +      S      ++ A+ + +K   Q+ +    ++ +L ++
Sbjct: 902  EAEEMRSRLTARMQEMEEVLHELESRLEEEEERVAQFQSEKKKMQQNIGD--LEQQLDEE 959

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
             + R+   L  +     + ++  ++L  I   N +L K    +     E   F      +
Sbjct: 960  EAARQKLQLEKVTMDAKL-KKIEEDLMVIEDQNAKLSKEKKQMEERISE---FTTNLAEE 1015

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV----RQGYQQALALYKRFRLLSRQK 595
                +   +L  + +  + D        E    ++    R+    +  L+ +   L  Q 
Sbjct: 1016 EEKSKSLQKLKTKHETMITDLEDRLRKEEKMRQELEKNRRKLEGDSTELHDQIAELQAQI 1075

Query: 596  EEIEKQIAQVTAK---------GEAEKTAILISILHEVHIQIHQIES 633
             E+  Q+A+   +          EA         + E+  QI +++ 
Sbjct: 1076 AELRAQLAKKEEELQAALARIEEEAALKNAAQKSIREMEAQISELQE 1122



 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 80/262 (30%), Gaps = 22/262 (8%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            +   ++E E        +  EL   +      I            +  + ++L       
Sbjct: 1043 EEKMRQELEKNRRKLEGDSTELHDQIAELQAQIA------ELRAQLAKKEEELQAALARI 1096

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                          R+ +     L +   ++     K   +   L   L      L+ + 
Sbjct: 1097 EEEAALKNAAQKSIREMEAQISELQEDLELEKAARNKAEKQRRDLGEEL----EALKTEL 1152

Query: 503  QELADIRYDNNELQK--------LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
            ++  D      EL+         L   L  +    +  L E   +    + F EL +QL+
Sbjct: 1153 EDTLDSTAAQQELRAKRETEVTQLKKTLEDEARAHEQMLSEVRQKH--NQAFEELNEQLE 1210

Query: 555  RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            +  R         +A   +  +   +  +L +       ++++ E Q+ ++  K    + 
Sbjct: 1211 QSKRSKASVDKAKQALESERNELQIELKSLSQSKNDSENRRKKAESQLQELQVKHTESER 1270

Query: 615  A--ILISILHEVHIQIHQIESQ 634
                L+  + ++  ++  ++  
Sbjct: 1271 QKHELLDKVSKMQAELESLQGT 1292


>gi|317033129|ref|XP_001394911.2| hypothetical protein ANI_1_2478094 [Aspergillus niger CBS 513.88]
          Length = 1032

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L + +     + +    E + QR         L +  ++       + +   N+  + + 
Sbjct: 654 LIASITERDDQLEALQEEIMAQRTENTNLQNALGETSKEKLSLLETNGSLNQNLEGLEEK 713

Query: 578 YQQALALYKRFRLLSRQK----EEIEKQIAQVTAKGEAEKTAI 616
            +Q   L  +     RQ      EIE++I  +  + + EKT  
Sbjct: 714 LRQCEVLLVQKDEDQRQILTEKAEIEREIEALRIQLDEEKTES 756


>gi|296198599|ref|XP_002746785.1| PREDICTED: filamin-A-interacting protein 1 isoform 1 [Callithrix
           jacchus]
          Length = 1216

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 97/364 (26%), Gaps = 22/364 (6%)

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           +   DV+ + +              +    ++L  L    +L  +             +L
Sbjct: 95  QAREDVIHMLKTEKTKPEVLEAHYGSAEPEKVLRVLHRDAILAQEKSIGEDVYEKPISEL 154

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRETENR 393
                        +L                   E    +    +    D     E E  
Sbjct: 155 DRLEEKQKETYRRMLEQLLL--AEKCHRRTVYELENEKHKHTDYMNKSDDFTNLLEQERE 212

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                 E+ +     K   N  +  KLR    +     L  + ++ +       +  K  
Sbjct: 213 RLKKLLEQEKAYQARKEKENAKRLNKLRDELVKLKSFALMLVDERQMHIEQLGLQSQKVQ 272

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQELADIRYD 511
              +  +   ++L   +    +  +K    E         H A    QE  +  A +   
Sbjct: 273 DLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDF-----EHKASRFSQEHEEMNAKLANQ 327

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
            +  ++L   L       +       + +  E    EL  ++ +         A  E   
Sbjct: 328 ESHNRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLR 387

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             V +   +   + K       Q  E+ K++ +         +  L   + ++  ++ ++
Sbjct: 388 KRVLEMEGKDEEIMKT----ESQCRELRKKLQEEEHH-----SKELKLEVEKLQKRMSEL 438

Query: 632 ESQE 635
           E  E
Sbjct: 439 EKLE 442


>gi|213982785|ref|NP_001135564.1| myosin, heavy chain 6, cardiac muscle, alpha, gene 2 [Xenopus
            (Silurana) tropicalis]
 gi|195540177|gb|AAI68055.1| Unknown (protein for MGC:185622) [Xenopus (Silurana) tropicalis]
          Length = 1936

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/272 (9%), Positives = 84/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       + +  LE         I+ +       + +  
Sbjct: 1564 IQLELNQVKGEIDRKIAEKDEEIEQLKRNSQRALESMQSTLDAEIRSRNDALRLKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       K+    +     +Q  +  +       K+        L  
Sbjct: 1624 DLNEMEIQLSHANRQAAESQKQLRNVQGLLKDTQLHLDDAQRGNDDLKEQ-------LAI 1676

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIH----QRLCERG 545
            +     ++  + +E+          +K+    L       +    +       ++  E  
Sbjct: 1677 VERRNNLMTAEIEEMRSALEQTERGRKVAEQELIDVTERVQLLHSQNTSLINTKKKIEAD 1736

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
              +L  +++  V++A       +  I D     ++          L R K+ +E+ +  +
Sbjct: 1737 VSQLQSEVEEAVQEARNADEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   +      L ++  ++ ++E++
Sbjct: 1797 QHRLDEAEQLAMKGGKKQLQKLEARVRELENE 1828


>gi|156098733|ref|XP_001615382.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148804256|gb|EDL45655.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 946

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 33/312 (10%), Positives = 91/312 (29%), Gaps = 25/312 (8%)

Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376
           IV   + D+       + + L        N+   +  S  E  +   +     A  +   
Sbjct: 51  IVSKTNLDEATNNYEGEVLKLETMLTEKENQYVELQESFQEMLEDKCK---LEAELEGYQ 107

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKN---CINHIKDQKLRYYYSQAIRDRLQ 433
           +++  ++       E+      + + E+             ++  K R    + + +   
Sbjct: 108 KAIYEMEENCASLKESHKEELKEIQEEMSNLCSQMDSINEELQFAKERCKELERLNEERA 167

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL----L 489
                   E        K     ++     QR +   + + +  K+   RE         
Sbjct: 168 STIDTLNGEIENLKEEKKLLGIDKETIQAQQRGIHEEMQQVRKEKEELFREREAADRERE 227

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLF----------SDFVEQKYFLPEEIHQ 539
            +      +  +  EL   +     + +    L                +++     +  
Sbjct: 228 AVDRKREAVDRERDELGREK---ERMDQCREELLQEKELIQTERDQLGRERHRQENNMKN 284

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            + +  F +L K+LD    +     +    +   VR   ++A     +   L ++ +E++
Sbjct: 285 IIIK--FSDLQKELDDLASENSTKESCLRESEQRVRALEKEASLCKNKIAGLDQKMQELK 342

Query: 600 KQIAQVTAKGEA 611
            ++A    +   
Sbjct: 343 SELASERQRSSQ 354


>gi|126291292|ref|XP_001379151.1| PREDICTED: similar to TNFAIP3 interacting protein 1 [Monodelphis
           domestica]
          Length = 669

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 78/211 (36%), Gaps = 19/211 (9%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS------QRLMQSSLVKGKLSKKPSLR 483
           ++  ++ ++  +E     + W ++ R   Q+         Q+L  S  +  +L      +
Sbjct: 301 EKKVKILEQQRSELLEVNKQWDQHFRSMKQQYEQKITELRQKLADSQKLVSELESDREQK 360

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +      L+   + ++ +  +   +  +  +L++   +L      Q    P    +   E
Sbjct: 361 QRDFDRKLLLAKSKIEMEEADKERLTAEGKDLRQRAKYL------QDQLTPLTRQREYQE 414

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +     L ++  +  D  L       +    R+   Q   L  +  LL++Q +  E+   
Sbjct: 415 KEIQR-LNKVLEEACDIRLLHPLHLESPEGPRE-LLQKQELLTQNELLNQQVKIFEEDFQ 472

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +  +  + E+         E+  Q+ ++++Q
Sbjct: 473 RERS--DRERMNE---EKEELKKQLEKLQAQ 498


>gi|119571561|gb|EAW51176.1| hCG27198, isoform CRA_b [Homo sapiens]
          Length = 1300

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 93/335 (27%), Gaps = 17/335 (5%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 707  RRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 766

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 767  AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 826

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E  L   
Sbjct: 827  RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELEGKLATL 885

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 886  SDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKNQLEESEFT- 944

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 945  ----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1000

Query: 609  GEA---------EKTAILISILHEVHIQIHQIESQ 634
                         + +  ++ ++++  Q+ +   +
Sbjct: 1001 MNELMKKHKAAVAQASRDLAQINDLQAQLEEANKE 1035



 Score = 37.9 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1025 LQAQLEEANKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFER 1081

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1082 TQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1141


>gi|332158041|ref|YP_004423320.1| chromosome segregation protein smc1 [Pyrococcus sp. NA2]
 gi|331033504|gb|AEC51316.1| chromosome segregation protein smc1 [Pyrococcus sp. NA2]
          Length = 1178

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 83/206 (40%), Gaps = 12/206 (5%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            L +  +K ++E        + + R  ++        +  + K K   +   R+   L  
Sbjct: 714 LLTRDIEKLLSEEKLINSEIEDSQRRIEEIDRLIHEKRGEIAKLKGKIERLERKREKLKK 773

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
            + +P   +E  +++ ++  +  +L++  S + S        L EE+  R  +    E +
Sbjct: 774 ALENPE-AREVTEKIREVEGEIGKLREELSRVESRLESLNSRLNEELIPR--KASLEEEI 830

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQ----ALALYKRFRLLSRQKEEIEKQIAQVT 606
           + L  ++       A  E  + ++ +  ++      +++ +     R++EE+E++I ++ 
Sbjct: 831 EGLVNKINALKANIAENEEALKELNKKLEELKAKEESVHSKINEYRRRREELEREIQELR 890

Query: 607 AKGEAEKTAILISILHEVHIQIHQIE 632
            +        L   + E+ I+ + + 
Sbjct: 891 KE-----KEELSKRMQELRIEANTLR 911



 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 53/145 (36%), Gaps = 7/145 (4%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           +E  + +  +R     L+     + S  VE +    +    R+      + +  L R + 
Sbjct: 664 KELKERVEKLRLRKEALE---GEVNSLKVELRGLENQGFELRIKMSEIEKEITLLTRDIE 720

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKGEAEKT 614
                     + I D ++  ++   L    R     L  + E +E++  ++    E  + 
Sbjct: 721 KLLSEEKLINSEIEDSQRRIEEIDRLIHEKRGEIAKLKGKIERLERKREKLKKALENPEA 780

Query: 615 AILISILHEVHIQIHQIESQEAMIE 639
             +   + EV  +I ++  + + +E
Sbjct: 781 REVTEKIREVEGEIGKLREELSRVE 805


>gi|326673454|ref|XP_002667361.2| PREDICTED: RUN and FYVE domain-containing protein 1-like [Danio
           rerio]
          Length = 697

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 95/289 (32%), Gaps = 33/289 (11%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +DP +       +    ++ +         +    + S    D +A+++   K     I+
Sbjct: 277 KDPQATESKQDDSKMTAILDQ-----KHYIEELNRHLSCTVTDLQAKMDSLEKTNSKLIE 331

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +         A+R+  +QL Q+         R  +   +    +  + R  +  L +   
Sbjct: 332 ELTAATDRINALREEQEQLKQENANILQSSQRKEEVTLQDSQVELETYRQTRQGLDEMYS 391

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                 +E            I QE  +EL  ++    +  ++   L      +K      
Sbjct: 392 VVWKQYKEEK---------RIRQELQKELE-LQIGLKQEMEVAMKLLEKDTHEKQDTLVA 441

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + Q+L            D+            +A+    ++  +  + L K+   +    +
Sbjct: 442 LRQQL------------DQVKNLNLQMFNKAQASDRVAQKKEEDMVHLEKKMIQMEAAMK 489

Query: 597 EIEKQIA--QVTAKGEAEKTAILISILH----EVHIQIHQIESQEAMIE 639
           E+E+++   +   K   E+   + + +      +  ++  +++  A +E
Sbjct: 490 ELEQRLQNSEDVQKNTDEQQNEIRTEMKGKVNALQKRLSDLDTLRAGLE 538


>gi|324504686|gb|ADY42022.1| Thyroid receptor-interacting protein 11 [Ascaris suum]
          Length = 653

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 80/250 (32%), Gaps = 11/250 (4%)

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                 E         N  +  K +  R        ++L+++  +  T      +   + 
Sbjct: 10  QQQIHAEAFSQMRDWANKNDREKMEVERDLIRTE--EKLKEVNAELDTLRDQNAKLLSRV 67

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE----LADIR 509
                            + +   +K     E  LL     +   L +  +E       ++
Sbjct: 68  EELESSHKEETVSAVEEVKREIDAKNKEHAE-ELLSLKQRYEKDLNDIREEKLTLEERLK 126

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
             N +L +    + +   E+   L E++    CE    +  K+L   +    +     E 
Sbjct: 127 VTNEQLVE-QERVLNSIKEENVHLKEQLKA--CEGQQAQCKKELHSVLEAKRVIENELET 183

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
              +  + +Q+  AL       S  K  +++Q++        E  +   + L  +  ++ 
Sbjct: 184 MREEKAEMFQRVEALQNELSEASECKRSMQEQLS-AVPSVNIEDVSKAHAELAALKEKLQ 242

Query: 630 QIESQEAMIE 639
            IE + A++E
Sbjct: 243 AIEEKCAILE 252


>gi|320034338|gb|EFW16283.1| myosin [Coccidioides posadasii str. Silveira]
          Length = 2416

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 83/253 (32%), Gaps = 23/253 (9%)

Query: 398  PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
             ++R  L   +      I    ++ +       RL +     I + + +     K++   
Sbjct: 858  EEQRDTLIREIMTRFQSIARGYVQRHLINK---RLYRAEASRIIQRNFHLYLNLKSSPWW 914

Query: 458  D---QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514
                   P     +S+    K  +K    EA              ++ +   D R  + E
Sbjct: 915  TLFMNMKPLLGETRSASEVKKRDEKIQQLEAKA-------KQDFADRQKLEEDRRRADAE 967

Query: 515  LQKLWSFLFSDFVEQKYFLPEEIHQRLC------ERGFGELLKQLDRQVRDAGLWSATTE 568
            +Q++   L S          EEI +RL              +   +          A  +
Sbjct: 968  MQRIKKTLES--ERALALDKEEIFKRLQLREVELTEKLAGAIADQESLEDQIDELIAAKK 1025

Query: 569  ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS--ILHEVHI 626
                D+     Q     +    L ++K+E+  +I+++  + +  +T        +H+++ 
Sbjct: 1026 KTEEDLDLRRSQLDQAAQLMGRLEKEKKELHGRISELDDELKVVETTHQQRDSEIHKLNQ 1085

Query: 627  QIHQIESQEAMIE 639
            +I  + S  ++ E
Sbjct: 1086 EIKVLNSHLSLKE 1098


>gi|301771628|ref|XP_002921229.1| PREDICTED: LOW QUALITY PROTEIN: myosin-1-like [Ailuropoda
            melanoleuca]
          Length = 1937

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/272 (10%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1563 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHVRVVESMQSTLDAEIRSRNDAIRLKKKMEG 1622

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       K     +     +Q  +  +L       +  L+E   L  
Sbjct: 1623 DLNEMEIQLNHANRMAAEALKNYRNTQAILKDTQIHLDDAL-----RGQEDLKEQ--LAM 1675

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1676 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1735

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1736 ISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1795

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1796 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1827


>gi|301615165|ref|XP_002937055.1| PREDICTED: myosin-4-like [Xenopus (Silurana) tropicalis]
          Length = 1105

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 72/214 (33%), Gaps = 16/214 (7%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            ++ +L+    +   +     +   +  +   ++    + +Q+ + +     +  + E  
Sbjct: 738 RLKKKLENDINELEIQLENSNKNTGELVKLVKKQQQQLKDLQTQMEEEAHQHEQEIEERN 797

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQRLC 542
           LL     +  ++ E  +    +   +   +     L     +    Q       + ++  
Sbjct: 798 LLER--RNGVLVSELEELRNAVEASDRSQKAQEQELMEISEKCNELQNQLQCISLAKKKQ 855

Query: 543 ERGFGELLKQ---LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           +    ++  +   L  ++R+A   +  + A    + +       L      L + K+ +E
Sbjct: 856 DANMQQVTAENEDLLNELRNAEERAKKSAAETSRIAEELHHEQDL---THHLQKIKKGLE 912

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            QI ++ A  E  +       L +    I ++E 
Sbjct: 913 SQIRELNANIEEAEQMT----LKDGKKLIQKLEG 942


>gi|297282318|ref|XP_002802251.1| PREDICTED: rootletin-like [Macaca mulatta]
          Length = 1920

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 20/215 (9%)

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    + +    +QL  +   E     R  ++     ++    +      L K  L   
Sbjct: 770 ERSRLQEQLAQLSRQLSGRE-QELEQARRAAQRQMEALERAAREKXXXXXXLEKEALEGS 828

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               +  L         +  E    L        EL  L   + +   E+     E + Q
Sbjct: 829 LFEVQRQLAQLEARREHLEAEGQALLLAKETLTGELAGLRQQIIA-IQEKASLDKELMAQ 887

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           +L +          +++            A+  D+++  ++  A +   R L  ++ +++
Sbjct: 888 KLVQAEREAQASLREQRA-----------AHEEDLQRLQREKEAAW---RELEAERAQLQ 933

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            Q+ +     + E  A L +   E+  +I  ++ +
Sbjct: 934 SQLQR----EQEELLARLEAEKEELSEEIATLQQE 964


>gi|296221128|ref|XP_002756614.1| PREDICTED: alpha-internexin [Callithrix jacchus]
          Length = 499

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 30/316 (9%), Positives = 82/316 (25%), Gaps = 34/316 (10%)

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           G        S G D         +    +   +               +      +   L
Sbjct: 64  GLAYRRPPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRAL 123

Query: 405 EIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           E  L        +   +   + + +RD   QL +              ++    + +   
Sbjct: 124 EAELAALRQRHAEPSRVGELFQRELRDLRAQLEEASSARAQALLE---RDGLAEEVQRLR 180

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD----NNELQKLW 519
            R  + S  +    +    ++  +    +    + ++    L ++ +     + E+ +L 
Sbjct: 181 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 240

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTE--------A 569
           + L +                L           + L  +   +      ++        A
Sbjct: 241 ATLQASSQAAAEVDVAVAKPDLSSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 300

Query: 570 NIVDVRQGYQQALALYKRF---------------RLLSRQKEEIEKQIAQVTAKGEAEKT 614
              +  +  ++ +  Y+R                  L RQ  E+E++       G  +  
Sbjct: 301 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEER-HNAEVAGYQDSI 359

Query: 615 AILISILHEVHIQIHQ 630
             L + L     ++ +
Sbjct: 360 GQLENDLRNTKSEMAR 375


>gi|281210918|gb|EFA85084.1| RING zinc finger-containing protein [Polysphondylium pallidum
           PN500]
          Length = 759

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 82/292 (28%), Gaps = 16/292 (5%)

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395
           +++ C +       ++     +      + Y  T        +    + L  RE   R+ 
Sbjct: 63  EVLDCPVCRETFDGYICNKIAKKIFETSKKYSSTTKMLEREIASLKQEHLIYREGVERNN 122

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
               E  E    L   IN ++ +K +          +   F+ Y  +     R  +++ +
Sbjct: 123 ADRGELEEKMNKLDEQINLLEAEKQK---ISEESRDINDQFRAYKDQQYRETRQQQESIQ 179

Query: 456 HRDQKGPSQRLMQSSLVK--GKLSKKPSLREAALLLTLINHPAILQEQ--YQELADIRYD 511
              Q+        S + +            E   +        +       +        
Sbjct: 180 KYMQQLKELEANNSRMSESLANQVSCTKAAEEKNMKLSQQTRELSHNMHGLESSLQTAKA 239

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF------GELLKQLDRQVRDAGLWSA 565
             +   L +        QK    E++  RL E          +    ++   +       
Sbjct: 240 ERDHAMLATKDLEQRARQKDREIEQLSSRLREANHHAEEARQQYHSDIEMYSKSRDKICE 299

Query: 566 TTEANI---VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
              A     V+  +   +A  L ++ R L R+ E+++ +I         +  
Sbjct: 300 LEGALTCVKVEQSKKEVEAEQLRQKNRQLERELEDLKSRINNSKTDSYLDMI 351



 Score = 37.6 bits (85), Expect = 6.2,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 87/259 (33%), Gaps = 20/259 (7%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            +       +               +     +    +A + ++ +  +    +   Y   
Sbjct: 107 LKQEHLIYREGVERNNADRGELEEKMNKLDEQINLLEAEKQKISEESRDINDQFRAYKDQ 166

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
             +  R +      Q  +Q  + + K  +  + R +  L   ++     +E+  +L+   
Sbjct: 167 QYRETRQQ------QESIQKYMQQLKELEANNSRMSESLANQVSCTKAAEEKNMKLSQQT 220

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
                 ++L   +       +    E  H  L  +   +  +Q DR++            
Sbjct: 221 ------RELSHNMHGLESSLQTAKAERDHAMLATKDLEQRARQKDREIEQLSSRLREANH 274

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKE------EIEKQIAQVTAKGEAEKTAILISILHE 623
           +  + RQ Y   + +Y + R    + E      ++E+   +V A+   +K   L   L +
Sbjct: 275 HAEEARQQYHSDIEMYSKSRDKICELEGALTCVKVEQSKKEVEAEQLRQKNRQLERELED 334

Query: 624 VHIQIH--QIESQEAMIEG 640
           +  +I+  + +S   MI+G
Sbjct: 335 LKSRINNSKTDSYLDMIKG 353


>gi|237756213|ref|ZP_04584777.1| signal transduction response regulator [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691623|gb|EEP60667.1| signal transduction response regulator [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 349

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 55/160 (34%), Gaps = 1/160 (0%)

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                 + N+  + + +   +     ++ E+ +L   L      +      E+     + 
Sbjct: 56  RIFCNIVENNRNVSEREILAMYKADLNDLEMGRLDEKLLEFEARKDIADKLELIAEEIDE 115

Query: 545 GFGELLKQLD-RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
              ++L+ ++  Q   A   +   E          +    L ++  +L  + EE  K+I 
Sbjct: 116 KILQILEVMNLHQENIAKHENIIKENEDSKFLTILEHLKILKRQNDILMSKLEEYHKEII 175

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
           ++  + +  K    +  L  +  +     +   +I+ F +
Sbjct: 176 RLNVELKVVKQEATLDFLTGLTNRRSFDRALNDLIKDFNE 215


>gi|297565307|ref|YP_003684279.1| metal dependent phosphohydrolase [Meiothermus silvanus DSM 9946]
 gi|296849756|gb|ADH62771.1| metal dependent phosphohydrolase [Meiothermus silvanus DSM 9946]
          Length = 587

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 48/125 (38%), Gaps = 12/125 (9%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
              +      +     + +  R+  +   E  ++L+  V+ +   + TT     +  +  
Sbjct: 75  AQAMREAAQTEIERTRQNLEARMQAQ-LKEERERLEAGVQASIRAAETTLKRDQEAIERE 133

Query: 579 QQALALYKRFRLLSRQKEEIEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           ++A         L R++E ++ ++   +   + +  +   L     ++  +  +++ QE 
Sbjct: 134 KEA---------LRREQERLQAELNSVRAEREEQKRELERLARRSEQLDARAIKLDQQEE 184

Query: 637 MIEGF 641
            +E F
Sbjct: 185 KLEAF 189


>gi|194674659|ref|XP_001254413.2| PREDICTED: citron [Bos taurus]
          Length = 2030

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 30/299 (10%), Positives = 91/299 (30%), Gaps = 32/299 (10%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              +       +   + +   + +   +E   ++     E  EL  +++      + +  
Sbjct: 618 DQGKPEVGEYAKLEKINAEQQLKIQELQEKLEKAVKASTEATELLQNIRQAKERAERELE 677

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           + +  +   + +++   +       +                 ++  +  +       K 
Sbjct: 678 KLHNREDSSEGIKKKLVEAEELEEKHREAQVSAQHLEVHLKQKEQHYEEKIKVLDNQIKK 737

Query: 481 SLREAALLLTLIN-HPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            L +   L  L+  H     E+ + L++    I   +++++ L   +       K     
Sbjct: 738 DLADKETLENLMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANS 797

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALAL 584
            +  +   +   E++ +L +Q       +   EA    + +  +           + L L
Sbjct: 798 SLFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKNRLLEL 857

Query: 585 YKRFRL-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             R R            L RQ  E++  + +  +     +   L +    +  Q+ Q +
Sbjct: 858 ETRLREVSLEHEEQKLELKRQLTELQLSLQERES-----QLTALQAARAALESQLRQAK 911


>gi|194388042|dbj|BAG65405.1| unnamed protein product [Homo sapiens]
          Length = 527

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 72/201 (35%), Gaps = 8/201 (3%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + DR   + ++ I+    Y    K+N  +R+Q    +  + + L       +   +E  
Sbjct: 182 EVEDRRAAMERQLISMKVKYQSLKKQNVFNREQMQRMKLQIATLLQMKGSQTEFEQQER- 240

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD-FVEQKYFLPEEIHQRLCERG 545
           LL  L      ++    E+ ++     + + L+  + S   V+         +  L +  
Sbjct: 241 LLAMLEQKNGEIKHLLGEIRNLE----KFKNLYDSMESKPSVDSGTLEDNTYYTDLLQMK 296

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
              L K+++    +  +                ++  A  +  +L   +  ++  ++ ++
Sbjct: 297 LDNLNKEIESTKGELSIQRMKALFESQRALDIERKLFANERCLQLSESENMKLRAKLDEL 356

Query: 606 TAKGEAEKTAI--LISILHEV 624
             K E E+T    ++    EV
Sbjct: 357 KLKYEPEETVEVPVLKKRREV 377


>gi|195111276|ref|XP_002000205.1| GI10100 [Drosophila mojavensis]
 gi|193916799|gb|EDW15666.1| GI10100 [Drosophila mojavensis]
          Length = 1256

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 31/284 (10%), Positives = 86/284 (30%), Gaps = 21/284 (7%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE--IHLKNCINHIKDQ 418
              +R   +   ++   E   +    +K+          +                 +   
Sbjct: 816  ETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSM 875

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            + R    +   + L Q  ++ + ++    +  +     +    P + L++      +L  
Sbjct: 876  EDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERQKADTPGKTLIR------QLRN 929

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
            +    E+A  L +       Q    ELA+++    E  +  +    +     +    E+ 
Sbjct: 930  QLEDAESARTLAM----KARQTAEAELAEVQAMFEESHRARND-AEERANAAHRDRAELQ 984

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             ++ E             ++          A  V+V +   +   L      L  Q  ++
Sbjct: 985  AQIEENEEEL-----SELMKKYSATVKQLNAEQVNVSESEFKLTELEAERNNLKEQVADL 1039

Query: 599  EKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIESQEAMIE 639
            + ++  V   G+      +  L     E+  ++   ++  A +E
Sbjct: 1040 QHRLDNVENLGDPSIAVMSKRLEMRTKELESRLELEQATRARLE 1083


>gi|158285826|ref|XP_001238803.2| AGAP007348-PA [Anopheles gambiae str. PEST]
 gi|157020178|gb|EAU77630.2| AGAP007348-PA [Anopheles gambiae str. PEST]
          Length = 751

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 38/337 (11%), Positives = 101/337 (29%), Gaps = 25/337 (7%)

Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE--DPDSFIRCY 366
           ++W  S R     +      +          C      + + V   R +  D    +R  
Sbjct: 1   MVWPCSQRQRELEEARARAAQMEKTMKWWSDCTANWREKWSKVRTERNKARDEAKQLRSN 60

Query: 367 GKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
            + A ++    +       +   + +           +             D+  R    
Sbjct: 61  LEAAIKESNSYKREKCELEMQITQLKKEMEKVHTLMMKHAGRFNKASLDAADEPDRD--- 117

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
                   +       + S  G     +      K P+     + +     +      E 
Sbjct: 118 -------GRGDNNCSPDISSDGLKNVNSEDGLVTKLPNLPDDGAGVPVAASANADLDIEE 170

Query: 486 ALLL--TLINHPAILQEQYQELADIRYDNNELQKLWSFL-FSDFVEQKYFLPEEIHQ-RL 541
            +L    +  H    +++ +++A+        ++L   L   D+ E        + Q RL
Sbjct: 171 YILQGGAMPKHSVEFKDKSEQMAEE-------RRLIQQLSKDDYDEDYLLQKITMLQLRL 223

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEA-NIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            +      +++ ++      L     +   + D  +  + A     R  L  +++  +E 
Sbjct: 224 DDAQKTIQIEREEKNAVHRNLEKTRQDMQELRDKCEELRAAKQDAVRELLTLQEQHRVEM 283

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           +I   + + E+     L   L E+  ++ +++++ A 
Sbjct: 284 RITHNSLQEESIARETLERRLCELRTELERLQAENAA 320


>gi|119571566|gb|EAW51181.1| hCG27198, isoform CRA_f [Homo sapiens]
          Length = 1285

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 93/335 (27%), Gaps = 17/335 (5%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
             +    +    +          K        L     +   L  +  D   F +      
Sbjct: 707  RRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLE 766

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             E   + S    D     + + +  +   +  + E  L      I+  +      +   +
Sbjct: 767  AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 826

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            R++Q   K +          +++ + +  K    +L +    K K+ ++    E  L   
Sbjct: 827  RMRQTHSKEMESRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELEGKLATL 885

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548
                     E  + L         L      +               ++  +L E  F  
Sbjct: 886  SDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKNQLEESEFT- 944

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                    V+         E   + +    +   AL ++   L R+K EI+ ++ +    
Sbjct: 945  ----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1000

Query: 609  GEA---------EKTAILISILHEVHIQIHQIESQ 634
                         + +  ++ ++++  Q+ +   +
Sbjct: 1001 MNELMKKHKAAVAQASRDLAQINDLQAQLEEANKE 1035



 Score = 37.9 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 523  FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
                +E+     +E+ ++L        ++ L++ + D  L S   EA I ++    +   
Sbjct: 1025 LQAQLEEANKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFER 1081

Query: 583  ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               KR   L+ + +E  +++ +           E E+   L   L +   ++ ++  +EA
Sbjct: 1082 TQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1141


>gi|115899466|ref|XP_787230.2| PREDICTED: similar to Centrosome- and Golgi-localized
           PKN-associated protein (CG-NAP) [Strongylocentrotus
           purpuratus]
 gi|115971364|ref|XP_001190046.1| PREDICTED: similar to Centrosome- and Golgi-localized
           PKN-associated protein (CG-NAP) [Strongylocentrotus
           purpuratus]
          Length = 3351

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 93/278 (33%), Gaps = 15/278 (5%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI--KDQK 419
                 + A      E+L  ++  W  + E    +      E E +    I+ +  +   
Sbjct: 97  QALNELRQALMLANDEALKRMEESWAAKLEEERKDLAYRTDEAEQNTHQLISQLQRRLSL 156

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 Q + ++  Q   + +                 ++K   +R  +      +  + 
Sbjct: 157 EHKQVVQTLAEQWDQEAVERLEAVRTEMEAKYTQELQEEKKEAEERREEDMERTKEHVEG 216

Query: 480 PSLREAALLL----TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
               +  +LL     L+ H   +++    +      + EL +L + L +++   +Y   +
Sbjct: 217 EYKSDVEILLKEREMLVEHAEEMRQNLDRVH-----HKELAELRANLKAEY--DQYVRAK 269

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           E  +    +    L++ L               A++  ++   +QA         L+ + 
Sbjct: 270 EEMEIARSQSEASLIEDLSLLRIAHQDLQQQYRADVASLKAQLEQA--GVPDPDQLAEEN 327

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +E++  + ++ AK + E T  L  +      Q+ + + 
Sbjct: 328 KELQTALTKLRAKLQEEHTEELNQLRLYFEKQVEETDE 365


>gi|56205310|emb|CAI24302.1| myosin phosphatase Rho interacting protein [Mus musculus]
          Length = 2269

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/255 (10%), Positives = 80/255 (31%), Gaps = 20/255 (7%)

Query: 380  PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
             + D     +   +     ++R +L++     ++  + + L+ +Y  ++R  L      +
Sbjct: 1823 SVKDRQAMEQHHVQQMKMLEDRFQLKVRELQAVHQEELRALQEHYIWSLRGALSLYQPSH 1882

Query: 440  ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
                   G    +       +  S   ++  + + +        E       + H  +  
Sbjct: 1883 PDSSLAPGPSEPRAVPAAKDEAESMSGLRERIQELEAQMGVMREE-------LGHKELEG 1935

Query: 500  EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
            +        + D   L+      F+   E      E++ ++          ++L++   +
Sbjct: 1936 DVAALQEKYQRDFESLKATCERGFAAMEETHQKKIEDLQRQHQ--------RELEKLREE 1987

Query: 560  AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
                 A   A  +   +  + A     R  +    ++    QI+ + +  EA      + 
Sbjct: 1988 KDRLLAEETAATISAIEAMKNA----HREEMERELEKSQRSQISSINSDIEA-LRRQYLE 2042

Query: 620  ILHEVHIQIHQIESQ 634
             L  V  ++  +  Q
Sbjct: 2043 ELQSVQRELEVLSEQ 2057


>gi|9507254|ref|NP_040356.1| colicin E1 protein [Plasmid ColE1]
 gi|25991441|gb|AAN76832.1|AF453410_1 colicin E1 [Escherichia fergusonii]
 gi|144308|gb|AAB59121.1| colicin E1 protein (cea) [Plasmid ColE1]
          Length = 522

 Score = 39.1 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/126 (11%), Positives = 37/126 (29%), Gaps = 8/126 (6%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           Q+L   +           P                    +   +    +   E    +  
Sbjct: 92  QRLKDIVNEALRHNASRTPSA-------TELAHANNAAMQAEAERLRLAKAEEKARKEAE 144

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV-HIQIHQIESQ 634
              +      +R + + R+K E E+Q+    A+ +        +   E+   ++   +S+
Sbjct: 145 AAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQKKLSAAQSE 204

Query: 635 EAMIEG 640
              ++G
Sbjct: 205 VVKMDG 210


>gi|312283723|ref|NP_001186048.1| TRIM39-RPP21 protein [Homo sapiens]
          Length = 503

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 69/187 (36%), Gaps = 2/187 (1%)

Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520
             + R       +   S     ++   +   I   ++  + ++ L+   Y++ E   L  
Sbjct: 70  RKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYEDQEAVCLIC 129

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ- 579
            +            ++  Q   E+   + L+ L++++++     ++ E    ++++  + 
Sbjct: 130 AISHTHRAHTVVPLDDATQEYKEK-LQKCLEPLEQKLQEITRCKSSEEKKPGELKRLVES 188

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +   + + F  L R+ +E ++ +     + E +    L      +  +   +    A +E
Sbjct: 189 RRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKRRDLAHLAAEVE 248

Query: 640 GFGKMSG 646
           G    SG
Sbjct: 249 GKCLQSG 255


>gi|325677955|ref|ZP_08157597.1| chromosome segregation protein SMC [Ruminococcus albus 8]
 gi|324110509|gb|EGC04683.1| chromosome segregation protein SMC [Ruminococcus albus 8]
          Length = 1184

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 57/150 (38%), Gaps = 9/150 (6%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           +E    L +    +  +  + + + + ++E+             +    E  +QL+    
Sbjct: 365 KEFNDLLDEADRSDKAVGAVNAEISAAYLEKSRLS---FTAESLKNTLQETSEQLENLAD 421

Query: 559 DAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           D        E    ++ +  ++       L ++  +L    + +EK+  ++ +  +  + 
Sbjct: 422 DRKDTEKNKENADKELEKLTKEQTRKKDSLGEKENVLGGMTKLLEKRREKLDSAVD--RF 479

Query: 615 AILISILHEVHIQIHQIESQEAMIEGFGKM 644
           A   S L E   +++ ++  E  +EGFG  
Sbjct: 480 AKAESALTETVSRLNILKDLERSMEGFGYS 509


>gi|242769947|ref|XP_002341877.1| DNA repair protein Rad50 [Talaromyces stipitatus ATCC 10500]
 gi|218725073|gb|EED24490.1| DNA repair protein Rad50 [Talaromyces stipitatus ATCC 10500]
          Length = 1328

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 42/387 (10%), Positives = 106/387 (27%), Gaps = 21/387 (5%)

Query: 253  GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
               + +     +      +    L +   DV           +        +     +  
Sbjct: 656  KIRDAIDDDPTEYSDVLQTRQNHLDQTRKDVEQFTGMHEYFNMCLEAVDSKKMCRTCMRP 715

Query: 313  LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFE 372
                  +    +                            ++  +          +TA  
Sbjct: 716  FKNETEMRTFRNRLEGLIKKNFSSSDEDLKQAEEDYENARMANTD--YDTWLRLTETAIP 773

Query: 373  KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
            +L            +   +  S +T  +    +      ++      +R      I+   
Sbjct: 774  ELEKNEEQYQSQKEEILKKLESHDTTVDDRAEKKREIESLSRTVTSIVR--IDSEIKSLR 831

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
             Q+ +    +         ++ ++       +       +    S+K   R+       +
Sbjct: 832  SQIAEVSSKQQQTDSTRVLEDIQNDIAAVGEKSRAIKLTISKLSSEKEQSRDE------L 885

Query: 493  NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
            N   +     +  +++   +++L+K  + L +   E K        QR         ++Q
Sbjct: 886  NRAELALRDVK--SNLDNGSHQLEK-KTSLLARVEEYKRMNA---KQRESIENADRYIEQ 939

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            L+ ++  A               +  QQAL  L  R   L+   +EI+  I +    G  
Sbjct: 940  LEPEIAKAQAKFDDINRRAESKERELQQALTHLSDRLHQLNLANDEIKSYIDR----GGP 995

Query: 612  EKTAILISILHEVHIQIHQIESQEAMI 638
            E+       L ++  QI  +E +++ I
Sbjct: 996  EQLIKSRKELEDIQQQIKTLEGEQSEI 1022


>gi|254478017|ref|ZP_05091401.1| PAS fold family protein [Carboxydibrachium pacificum DSM 12653]
 gi|214036021|gb|EEB76711.1| PAS fold family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 793

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 68/203 (33%), Gaps = 27/203 (13%)

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +K PS+R  +S + + K S     ++   L  +  +  +L   +     + + N   Q +
Sbjct: 3   EKMPSERKNKSFIEESKKSIAYLQKKEEFLSRIFENEQMLIVVWALDGRVVWFNRYTQAV 62

Query: 519 WSFLFSDFVEQKYFL-------PEEIHQRLCERGFGELLKQLDRQVR------------- 558
                 +  E+              I + L +     +  + +  +              
Sbjct: 63  IGIAVEEQTERIDISSIIPRDMISRIKENLDDTEDRGIHYKCENPMVLKDGRQIYIMWHN 122

Query: 559 ------DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
                 +   +  +T  +I D++   ++          L+ +    +++++ +  K  A 
Sbjct: 123 SIICDDEGNRYIVSTGIDITDLKNAERRLEEANSNLLALNEELMAQQEELSAMNEKLMA- 181

Query: 613 KTAILISILHEVHIQIHQIESQE 635
           +   L   L E+  Q  +++  E
Sbjct: 182 REEELRQNLIEIQRQQDELKRSE 204


>gi|260827853|ref|XP_002608878.1| hypothetical protein BRAFLDRAFT_129938 [Branchiostoma floridae]
 gi|229294232|gb|EEN64888.1| hypothetical protein BRAFLDRAFT_129938 [Branchiostoma floridae]
          Length = 612

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 66/203 (32%), Gaps = 20/203 (9%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE----AA 486
           R + +      +        + +      +   +  M+  L +    K   LRE      
Sbjct: 184 RSKSMLHSQEVKRLYEEMEVQLSKEREKIRVEVEERMRVELARKLEEKDDQLRELNQRRK 243

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD-FVEQKYFLPEEIHQRLC--- 542
            L  ++      +++          +   Q+L   +      E +     E+ QR     
Sbjct: 244 ELELMLKDLDHREKEK---------DKRYQELEEMIAELTVKEAQIMKENEVLQRENLKL 294

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +    E L  L+                   + + Y+ A+   +R    +++++++E Q+
Sbjct: 295 QAQLDESLHSLEESQELCIQMQEKLHKERALLSRDYEDAVMENERK---AKERDDLEFQL 351

Query: 603 AQVTAKGEAEKTAILISILHEVH 625
            ++  K   E+   L  I HEV 
Sbjct: 352 QKLKQKMSEERADELSKIAHEVE 374


>gi|194750124|ref|XP_001957480.1| GF24009 [Drosophila ananassae]
 gi|190624762|gb|EDV40286.1| GF24009 [Drosophila ananassae]
          Length = 1845

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 82/244 (33%), Gaps = 35/244 (14%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG-PSQRLMQSSLVKGKLSKK 479
            R    QA+  +L+Q+ +++  +     +         +  G   +R  +    K    ++
Sbjct: 797  RADQLQALVTKLEQMLERFNEQSLSPIKGHSARKPGTETVGDILERQNEKLEDKLAAVRE 856

Query: 480  PSLREAALLLTLINHPAILQEQYQE-LAD-------IRYDNNELQKLWSFLFSDFVEQKY 531
              + E     T       +++Q +E L++       +    + ++K  +    +   Q+ 
Sbjct: 857  QMIVERQAARTANLSLWKVEKQLEEALSEKKMLARRMELTEDRIKKAQNA---NEESQRM 913

Query: 532  FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                +   R  +    EL ++L    RD        E    +  +   + +        L
Sbjct: 914  LKTAQEETRQRDSKIEELKQELAAAKRDVLKEHRQWEKAEQERMKCKSEIIEHLANVHKL 973

Query: 592  SRQKEEIEKQIAQVTAKGE-----------------------AEKTAILISILHEVHIQI 628
             +Q+ E++++I Q+  + +                       ++ T  L   L ++    
Sbjct: 974  EQQETELKQKIKQIQTRFDGLTLENKCIQRELQDERERSSATSDNTMALQKELKQLKENF 1033

Query: 629  HQIE 632
             +++
Sbjct: 1034 QRLK 1037


>gi|123449445|ref|XP_001313441.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121895325|gb|EAY00512.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 1798

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 36/312 (11%), Positives = 96/312 (30%), Gaps = 17/312 (5%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D DD      Y+  D      + GN  +  ++  G D +  I+     +  +   E+L  
Sbjct: 1144 DNDDKENDYQYEEYDDDEEVKVEGNVKSRDVVILGNDEEEEIKVVEGKSELEDENENLKK 1203

Query: 382  VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
                 K +  N    + +  +      +      KD + +    +     L+    +   
Sbjct: 1204 QIDDLKNQLRNLQKESDNSTSSDSESDEKQNQKEKDTEEKLSQKEEENQLLKAKISELEE 1263

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
            + +      +      D +     + + +     L  K   ++  ++       +   + 
Sbjct: 1264 KENQLKITLQNKHSEEDLENIKNEVQKLNQENEILKSKIDDQQKIIIEL-----SNTAQN 1318

Query: 502  YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
             QEL D++ +NN+ Q L + L  +    K    +       +       ++++       
Sbjct: 1319 EQELNDLKSENNKNQLLITSLQQEIENLKAKNEKSSSSSSSDDEKENKDEEIEIL----- 1373

Query: 562  LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                  +  I  +     +             + E ++K+I  +  +     +      +
Sbjct: 1374 ------KKEIETLNGTISEKQNFETLISEKDSEIESLKKEIQSIETERNNNLSGKE-QEI 1426

Query: 622  HEVHIQIHQIES 633
              +  +I  ++S
Sbjct: 1427 ENLKKEIETMKS 1438


>gi|111656957|ref|ZP_01407771.1| hypothetical protein SpneT_02001808 [Streptococcus pneumoniae
           TIGR4]
          Length = 479

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 46/127 (36%), Gaps = 1/127 (0%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           +   L   L    VE K    E++   +          Q         L  A  +     
Sbjct: 182 DYATLKVALAKKEVEAKELEIEKLQYEISTLEQEVATAQHQVDNLKKLLAGADPDDGTEV 241

Query: 574 VRQGYQQ-ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +    ++    L  +   L++++ E+EK +  +  +G+ +      +   E+  +  +++
Sbjct: 242 IEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQ 301

Query: 633 SQEAMIE 639
           ++ A +E
Sbjct: 302 NKVADLE 308



 Score = 37.9 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L ++       +  L++++ +  +      A+ 
Sbjct: 266 ELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLEKEISNLEI--LLGGADS 323

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            D     Q  LA   +   L + ++E++  + ++   G+ E+T
Sbjct: 324 EDDTAALQNKLA--TKKAELEKTQKELDAALNELGPDGDEEET 364


>gi|332813178|ref|XP_003309061.1| PREDICTED: girdin isoform 1 [Pan troglodytes]
          Length = 1843

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 42/334 (12%), Positives = 102/334 (30%), Gaps = 30/334 (8%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
           +   +   K ++++   ++   +      +  +D         K   EK I       + 
Sbjct: 497 EKENQRLSKKVEILENEIVQEKQSLQNCQNLSKD-----LMKEKAQLEKTIETLRENSER 551

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
             K   +          +  +    +    +KD            ++  ++  + I E S
Sbjct: 552 QIKILEQENEHLNQTVSSLRQRSQISAEARVKD-----------IEKENKILHESIKETS 600

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                 +   R   ++    +       + +       +E  LL   I +  I  E+ + 
Sbjct: 601 SKLSKIEFEKRQIKKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEA 660

Query: 505 LA----DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           L     ++  +N +L+K      +   + +    E              ++ L +     
Sbjct: 661 LEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQLDEENLELRRNVESL-KCASMK 719

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE------EIEKQIAQVTAKGEAEKT 614
                     +   ++  ++ L L K     + + E      +IE Q  Q T +   +K 
Sbjct: 720 MAQLQLENKELESEKEQLKKGLELLKASFKKTERLEVSYQGLDIENQRLQKTLENSNKKI 779

Query: 615 AILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             L S L ++ ++   ++     +E     S RL
Sbjct: 780 QQLESELQDLEMENQTLQKN---LEELKISSKRL 810


>gi|328946069|gb|EGG40215.1| agglutinin receptor [Streptococcus sanguinis SK1087]
          Length = 1400

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 95/286 (33%), Gaps = 27/286 (9%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +     A +    ++L   +  + R     +    D   +   +       +K  + +  
Sbjct: 160 KESANQALKDQYDKALASYEQEYSRIQAENAQLEADYEQKRTAYQAELNRIVKINQEKEA 219

Query: 424 --------YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
                   Y +     LQ+  Q      +    Y  +    +++   ++R     L +  
Sbjct: 220 SYQAALAAYQEDRSRILQENAQAKADYQTAMDSYATELKATQEKNAQAKRRYDEKLAQVS 279

Query: 476 LSKKPSLREAALLLTLIN-----HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530
              K +  E   +          +   +++   E++ +    +E + ++    +D+ +Q 
Sbjct: 280 ARNKAAQAENTAIAARNQAAKKAYQESVKQYEAEVSRLAQVKSEKEAVYQAALADYEKQ- 338

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                    R+ +    EL +Q   ++          +      +Q Y+ ALA  +    
Sbjct: 339 -------LARVQKEN-AELEQQYQSELTAYQQEVERIQTANQAAKQSYETALAKIQEQ-- 388

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +++ E   +++ Q  A    E+    ++   E   +I Q ++Q A
Sbjct: 389 -NKEIEAKNQEVQQKNAAL-KEQYQADLAAYQERLAEIRQ-KNQAA 431


>gi|302846877|ref|XP_002954974.1| hypothetical protein VOLCADRAFT_95794 [Volvox carteri f. nagariensis]
 gi|300259737|gb|EFJ43962.1| hypothetical protein VOLCADRAFT_95794 [Volvox carteri f. nagariensis]
          Length = 3311

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 536  EIHQRLCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSR 593
            ++  +L ++    E ++ L     +     A     + +V++  Q Q + + +R   LS 
Sbjct: 1173 DLQSKLVDQEAALEEVQVLREATTEERQRLAQLRGELDEVQRALQSQRVEIDQRSAALSE 1232

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++ E E    +++A    E+  + +  L E+  +   +E+ EA ++
Sbjct: 1233 REAEAETSRQELSAG--KEELRLGLERLQELQSRSATVEATEARLK 1276



 Score = 38.3 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 34/240 (14%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               Q      +++      +        ++ +    Q+     ++QS     +L  + +
Sbjct: 441 KTLQQDCTKLREEVSSLAREKERLMLSIEEERSSWHKQQKAELEILQSQQQAARLETERN 500

Query: 482 LREAALLLTLINHPAILQEQYQEL------------ADIRYDNNELQKLWSFLFSDFVEQ 529
             +  LL        +  ++ +E               +  D   LQKL   L +   E+
Sbjct: 501 RADLELLR---QKQEMRAKEIEEWITEQTAAIKHAKGKVEADERRLQKLGEELLTREKEE 557

Query: 530 KYFLPEEIHQRLCE----------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
                 ++ + L +                L+  +   + A L  A         +    
Sbjct: 558 AAL-KADLAEELQKVKRDSAAAAMEQRRLQLQSAELASQQASLEEAKRNMAAEAQQSLRD 616

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +  AL  R   L R++ E+E+Q + +                  + ++  ++++    +E
Sbjct: 617 REAALLDRQTRLDRRQSELEQQRSAME--------LEQQRRAMALELREQELQNTSRSLE 668


>gi|194768983|ref|XP_001966590.1| GF21910 [Drosophila ananassae]
 gi|190617354|gb|EDV32878.1| GF21910 [Drosophila ananassae]
          Length = 1282

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 84/253 (33%), Gaps = 11/253 (4%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
           D    +    ++     +         +  N    +KLR      + DRL+    + + E
Sbjct: 450 DASIAQAKFRQAIAEEKQEITDLDEADSEENVFDLEKLRSLLQAELEDRLEGSHPQQVLE 509

Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
            +         AR +      QRL +          +    EA +   ++    +++   
Sbjct: 510 RAWTALR----ARWQRLDVVDQRLAELQDQLVVTEHEKKTLEADISQYILQCDELMKNNE 565

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
             L ++        K          E       ++  +L +      +    ++     L
Sbjct: 566 LLLNELD-------KFKRNKLETIEEHHEETIVQLEGQLEDARLRLEVALQAQRELQEEL 618

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
              ++E +  ++++      +  ++      + +++E+ +A    + +  +  +L ++  
Sbjct: 619 ARESSEPDSDELKELLSATRSKLEKAEAQLAESQDLEEMLANTKQELQELELEVLPNLRQ 678

Query: 623 EVHIQIHQIESQE 635
           E+  + +Q ++ E
Sbjct: 679 ELEAKTNQQKAAE 691



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 86/268 (32%), Gaps = 29/268 (10%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
             E  + ++   +++  + + E +     +        LK  ++  + +  +     A  
Sbjct: 592 QLEGQLEDARLRLEVALQAQRELQEELARESSEPDSDELKELLSATRSKLEKAEAQLAES 651

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             L+++      E          N R   +   +Q+       K  ++K           
Sbjct: 652 QDLEEMLANTKQELQELELEVLPNLRQELEAKTNQQKAAEEQHKSHIAKLQEK------- 704

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                   +QE+ + + ++    ++L++    L      Q+ F  ++       +     
Sbjct: 705 --------IQEEQERIRELLLQQDKLEQ-QKELMEVEQNQQLFNIKKELTSTTTQLQDCQ 755

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            K   R+V+ + L     +A+    R        L +     + Q +E+++Q+       
Sbjct: 756 EKLSLREVQLSELQEQLKDASEEKAR-----LEELLQNSGGDTAQVQELQRQL------- 803

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAM 637
                      L +   Q   ++S EA+
Sbjct: 804 -EAIQQREQQWLLDAQTQQQALQSAEAL 830


>gi|194758940|ref|XP_001961714.1| GF14794 [Drosophila ananassae]
 gi|190615411|gb|EDV30935.1| GF14794 [Drosophila ananassae]
          Length = 1790

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 85/283 (30%), Gaps = 13/283 (4%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY-- 423
              K A +KL              E         +        L   +  IKD   +    
Sbjct: 1357 KDKEAVQKLEETLKDQSKQW--EEQRALFEEKENHLQTEVSKLSEELEKIKDSSEKAVEA 1414

Query: 424  --YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-KLSKKP 480
               +Q      +   QK  T+     +  K       +   S+  +Q       +   + 
Sbjct: 1415 LTQAQEFVKEREAELQKVKTQLETQEQLNKNLEETLLKAQESEGTLQGQSQAVLEQLNQL 1474

Query: 481  SLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                A L   +     +L+   Q+L D    +        KL   L      ++  + E 
Sbjct: 1475 QQANAELQDAVSQREEVLKLVTQKLEDCNNQLEEQKASHNKLQDKLEKAQQRERDLVEET 1534

Query: 537  IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                       E  ++L + ++               + +  +    + +   + S+  E
Sbjct: 1535 SKLEEQMSQLKEANEELQKSLQQNKTLLEKGNEFDSQLAEYQKVIDEMDETASMKSKLLE 1594

Query: 597  EIEKQIAQVTAKGEAEKTAILIS--ILHEVHIQIHQIESQEAM 637
            +++K++ ++ A       A   +   + E+  ++  ++ +++M
Sbjct: 1595 QLQKRVVELEAALHLANEAQKTASFEMTELRRRLESLDQEKSM 1637


>gi|145503910|ref|XP_001437927.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405088|emb|CAK70530.1| unnamed protein product [Paramecium tetraurelia]
          Length = 663

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 80/235 (34%), Gaps = 19/235 (8%)

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             + D   + Y  +  +++++Q   K+        R  +++ +        +RL      
Sbjct: 356 YALSDANKQKYIFEEYKEKIRQFELKFQELQLQNERLRQQDHKVAVLTTEIERLNSLIKQ 415

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
               + +   +   + L ++++  I +             +E+++L   L     EQK +
Sbjct: 416 LNTDADEWRQKYQKMELAMLDYRQIEKTNRDAATKNELLLDEIERLKKIL-----EQKQY 470

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             +++ ++     F  +  Q+     +A       +           Q     KR     
Sbjct: 471 DMDQLIKQ-----FDVIQSQISTYQINANTSVNRIQDYESTQTSTILQENERLKRQLQQF 525

Query: 593 RQ-KEEIEKQIAQVTAKGEAE--------KTAILISILHEVHIQIHQIESQEAMI 638
           +Q    ++ Q+ +   K +                + L ++  QI + E++ AM+
Sbjct: 526 QQQVSTLQTQVQEQNTKNQQLIAQQQQTYMMNNNNAELEKLKRQIEEYENKIAML 580


>gi|123509862|ref|XP_001329960.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121913011|gb|EAY17825.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2923

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 37/353 (10%), Positives = 108/353 (30%), Gaps = 29/353 (8%)

Query: 305  YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364
             +   L K     V+  D  +         +++    +           +  +     ++
Sbjct: 1862 EEKSNLQKTLRNQVVLLDESETKKHE----LEIKFNTMKTNFENLQKQFNDLQTKHDELK 1917

Query: 365  CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
               +   E L  E+            +     + + +   ++        ++D K     
Sbjct: 1918 KENEDQIENLSKENEKFDRNSKDLINKITQLESENRQLGGDLQTTKL--ELEDIKRSKQN 1975

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             Q I D++     +         +  K      +     +      +       K    E
Sbjct: 1976 LQEIYDKVSNEKSETEKSVRELKKQNKDLLGQLEDITEKETSANGKISSINSQMKTLKEE 2035

Query: 485  AALL-----LTLINHPAILQEQYQELADIRYDNNEL-------QKLWSFLFSDFVEQKYF 532
               L       L ++  + ++  +E+ +I+  N++L       +     +      QK  
Sbjct: 2036 KDKLESSNFKLLEDYRTLKEKSIKEINEIKIQNDKLTNENTTLKNEIERIEKSLENQKSV 2095

Query: 533  LPEEIHQ-RLCERGFGELLKQL----DRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
              + I             + ++     + +   G  +   E +  ++R   +    L ++
Sbjct: 2096 NSQNISALTTRNNDLERTISEMRQQHMKSISTIGEMTTNDEISKREIRNLKENNKNLQEK 2155

Query: 588  FRLLSRQKEEIEKQIAQVTAKGEAEKTA------ILISILHEVHIQIHQIESQ 634
               L + + E+++QI++  ++ + +K+            + E+  QI+Q+  +
Sbjct: 2156 IDNLIKNENELKRQISKEKSEKDQQKSQYENEDHENKRKISELSNQINQLSQE 2208


>gi|18391490|ref|NP_563924.1| LINC2 (LITTLE NUCLEI2) [Arabidopsis thaliana]
 gi|4850405|gb|AAD31075.1|AC007357_24 Similar to gb|D64087 nuclear matrix constituent protein 1 (NMCP1)
           from Daucus carota [Arabidopsis thaliana]
 gi|332190866|gb|AEE28987.1| nuclear matrix constituent protein-like protein [Arabidopsis
           thaliana]
          Length = 1128

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 86/265 (32%), Gaps = 19/265 (7%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
           + +E E+       +R  L    K      +    +        +++ ++ +K   +   
Sbjct: 247 FTKERESYEGTFQKQREYLNEWEKKLQGKEESITEQKRNLNQREEKVNEIEKKLKLKEKE 306

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
              + +K      +   ++  +   L +  L+ K        +  L     +   + + +
Sbjct: 307 LEEWNRKVDLSMSKSKETEEDITKRLEE--LTTKEKEAHTLQITLLAKENELRAFEEKLI 364

Query: 506 ADI-----RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           A       +  +++ + L S +            EEI + L ++     +++L+RQ  + 
Sbjct: 365 AREGTEIQKLIDDQKEVLGSKMLEF-----ELECEEIRKSL-DKELQRKIEELERQKVEI 418

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
                  E     + + + +            +  +E EK I     +   EK  +L   
Sbjct: 419 DHSEEKLEKRNQAMNKKFDRVNEKEMDLEAKLKTIKEREKIIQAEEKRLSLEKQQLLSDK 478

Query: 621 ------LHEVHIQIHQIESQEAMIE 639
                   E+     ++  +E MIE
Sbjct: 479 ESLEDLQQEIEKIRAEMTKKEEMIE 503


>gi|33597878|ref|NP_885521.1| putative chromosome partition protein [Bordetella parapertussis
           12822]
 gi|33602781|ref|NP_890341.1| putative chromosome partition protein [Bordetella bronchiseptica
           RB50]
 gi|33574307|emb|CAE38640.1| putative chromosome partition protein [Bordetella parapertussis]
 gi|33577223|emb|CAE35780.1| putative chromosome partition protein [Bordetella bronchiseptica
           RB50]
          Length = 1195

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGY----QQALALYKRFRLLSRQKEEIEKQIAQV 605
           L  ++ +VRDA        A +  V Q      Q      ++ + L +++E +++++ ++
Sbjct: 390 LPAIEARVRDAAAGRDDMRAALARVEQNLALVAQTQRDADRQLQTLEQRRERLQQELREL 449

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
               + E+   L         Q+   +++ A +EG
Sbjct: 450 -HTPDPERLEQLAGDRLAGEDQLEAAQAELATLEG 483


>gi|159116329|ref|XP_001708386.1| Coiled-coil protein [Giardia lamblia ATCC 50803]
 gi|157436497|gb|EDO80712.1| Coiled-coil protein [Giardia lamblia ATCC 50803]
          Length = 1675

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 77/244 (31%), Gaps = 11/244 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R     +    ++   L   LK     ++D + +    Q  +++L++       E+    
Sbjct: 560 RTLNADNTQKEEDLNALTSKLKASDGKLRDLEQKLLQEQQGKEQLREQLSNLQDEYEDLS 619

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
           +  +      + K      +   L + +   K   +E   L +   H + L    Q+L +
Sbjct: 620 KQLRMKEAEIEDKIMQINTLSPQLDEARYRIKRLEKEYTDLKSTHIHNSELDPYRQQLTE 679

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
                +EL +    L       +    + +             K+L              
Sbjct: 680 KDIKIDELNRELQTLQELQATGEQAHSDLMRD----------FKELTDTAEKRDKELLEK 729

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           +  I  +    +     + + R      E+ E +I+++ ++ + E    L     E+  Q
Sbjct: 730 DLTIDRLLDAIRVQEDSFTKLRTSIICMED-EHRISEMASQQQKECLEELTKAREELEAQ 788

Query: 628 IHQI 631
           +  +
Sbjct: 789 VQAL 792



 Score = 37.2 bits (84), Expect = 8.1,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 49/133 (36%), Gaps = 20/133 (15%)

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEI------HQRLCERGFGELL-KQLDRQVRDAG 561
              +   +++   L      +    P          QR+       L+ ++++R++    
Sbjct: 819 NLCDKLNREI-EDLTEQLNARPNVDPAVFTMLKEAQQRIKTLEARPLIPEEVERELMALR 877

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                +E +++D R+  ++   L +      R+ EE++++I +              + +
Sbjct: 878 EQLTASEKDLIDARELERRLKELEQLLEERDREIEELKREIMEKN------------ARI 925

Query: 622 HEVHIQIHQIESQ 634
            E+  +I   +S 
Sbjct: 926 QELEYKISNAQST 938


>gi|324501248|gb|ADY40557.1| Daple-like protein [Ascaris suum]
          Length = 1401

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/102 (8%), Positives = 40/102 (39%), Gaps = 9/102 (8%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE---- 597
            +      L+++  + ++  + +   E ++    Q    A  L +         +E    
Sbjct: 613 EKAELERQLEKIRTEQKEWRIKNDRLEQDVQKTEQAIAHAEKLRRNIEAEKNALKERNEI 672

Query: 598 IEKQIAQ-----VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           +E+++ +     +  +   ++      +L E   ++++++++
Sbjct: 673 LEQRLDEIKVKLLNMENVEKRLESNEQMLVEKQNRLNELQAE 714


>gi|312898599|ref|ZP_07757989.1| segregation protein SMC [Megasphaera micronuciformis F0359]
 gi|310620518|gb|EFQ04088.1| segregation protein SMC [Megasphaera micronuciformis F0359]
          Length = 1180

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 6/231 (2%)

Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
             D+ +        R+R + +                  A   +     +RL +  L   
Sbjct: 248 FADRNVEKQIEAKERERQRVMASIEAEGARMQALNEAAGAAKSEADRLRERLERYDLQVE 307

Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS--FLFSDFVEQKYF 532
              +     ++ L    I    +     +  + +     E +       L    + +   
Sbjct: 308 DNRRIIETVKSDLQDISIRKEKVSARISELTSRLESGRAEEKAAVQSVTLTEKLMLEATT 367

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY--KRFRL 590
             E I + L        L++  +      +            R G  +       +R + 
Sbjct: 368 QAEAIQESLRSEEKAVQLRKEKQYALHRDVEDFKRRLTENIERSGELKERIERVEERKKE 427

Query: 591 LSRQKEEIEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           L R   ++E +I   ++  K   +K       L  +   + +   QE +++
Sbjct: 428 LERHHLDLEAEIGQVRINEKSLQDKLRTASEELESLKKSLDETAKQEGVLK 478


>gi|301606658|ref|XP_002932939.1| PREDICTED: myosin-7B-like [Xenopus (Silurana) tropicalis]
          Length = 1896

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 87/281 (30%), Gaps = 36/281 (12%)

Query: 378  SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
            +     M+ +      +        +L   +K  +   + +K      +    +L++  +
Sbjct: 764  ARKDALMVIQWNIRAFNAVKNWSWMKLFFKIKPLLKSAQTEKEMANMKEEFL-KLKEALE 822

Query: 438  KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
            K   +            + ++  G   +  Q +L   +           L+ T I   A 
Sbjct: 823  KSEAKRKELEERQVTLTQEKNDLGLQLQAEQDNLADAEERCD------LLIKTKIQLEAK 876

Query: 498  LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-------------- 543
            ++E  + L D    N++L      L  +  E K    +++   L +              
Sbjct: 877  VKELTERLEDEEEMNSDLTSKKRKLEDECAELKK-DIDDLEITLAKVEKEKHATENKVKN 935

Query: 544  --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                   L + + R  ++        +  + D++    +   L K    L +Q +++E  
Sbjct: 936  LIEEMAALDEIIARLTKEKKALQEAHQQALDDLQAEEDKVNTLTKAKAKLEQQVDDLEGS 995

Query: 602  IAQVTA------------KGEAEKTAILISILHEVHIQIHQ 630
            + Q               +G+ + T   +  L     Q+ +
Sbjct: 996  LEQEKKLRMDLERAKRKLEGDLKLTQESVMDLDNDKQQLEE 1036


>gi|302776872|ref|XP_002971576.1| hypothetical protein SELMODRAFT_412400 [Selaginella moellendorffii]
 gi|300160708|gb|EFJ27325.1| hypothetical protein SELMODRAFT_412400 [Selaginella moellendorffii]
          Length = 539

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 4/116 (3%)

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            L S           F PE++  RL ++   + L++L              +++    + 
Sbjct: 102 ALKSAYIQLQAAHSPFDPEKL--RLADKAVIQELRRLSEMKHGFRDQQRLRDSSSTLHQH 159

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQ-VTAKGEAEKTAILI-SILHEVHIQIHQ 630
            +Q      ++ + L    EE+ ++I +  TA G  ++      + +     +I Q
Sbjct: 160 LHQHHYHNGRQQQSLEEHNEELRRKIQELATAAGIKQRAMETYEARVRACEAEIEQ 215


>gi|289548575|ref|YP_003473563.1| MutS2 family protein [Thermocrinis albus DSM 14484]
 gi|289182192|gb|ADC89436.1| MutS2 family protein [Thermocrinis albus DSM 14484]
          Length = 751

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 45/134 (33%), Gaps = 6/134 (4%)

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPE---EIHQRLCERGFGEL---LKQLDRQVRD 559
           A + +D + L  L+S L+                I Q + +R    L    +   +   +
Sbjct: 459 ATVAFDKDSLMPLYSILYDAVGGSMAMEIALRCGIPQEVIDRAKQNLPEGFESYMQAREN 518

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
              +    E  + ++     +   L  +  +L  Q E  +++I +   +   E    L +
Sbjct: 519 LEEYVREYEKRLKELEDTKMELERLRAQQEVLLSQLEREKEEIQRKAMQEAMEYLKKLEA 578

Query: 620 ILHEVHIQIHQIES 633
              E+     + + 
Sbjct: 579 EYRELIKTAKERQR 592


>gi|218260866|ref|ZP_03475956.1| hypothetical protein PRABACTJOHN_01620 [Parabacteroides johnsonii
          DSM 18315]
 gi|218224323|gb|EEC96973.1| hypothetical protein PRABACTJOHN_01620 [Parabacteroides johnsonii
          DSM 18315]
          Length = 58

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 8  IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
          I  +   +P+++ + +  +    R        + W   P+  E+T SF  N +K  +Y 
Sbjct: 6  IDAVR-RMPLADFLARLGHEPVRRSGN-----ELWYLAPYRGERTSSFRVNVAKQLWYD 58


>gi|195114380|ref|XP_002001745.1| GI17016 [Drosophila mojavensis]
 gi|193912320|gb|EDW11187.1| GI17016 [Drosophila mojavensis]
          Length = 1866

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 93/295 (31%), Gaps = 20/295 (6%)

Query: 353  LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
              +  D               L +    L+  +   E            A      +   
Sbjct: 1055 TDQALDDAVVFVTMSDDENASLELRYQALLSDMSWNERAEALATLQAYVARHPGRAQELH 1114

Query: 413  NHIKDQKLRYYYSQAI----RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
              +     R    + +      + +   ++ + +     +  +   R  D K   ++L++
Sbjct: 1115 QKLSSPSRRRSLQETLKKYQAKQARAQQKRALLQQEKAAKLQQLFVRVEDVKAAKKQLIE 1174

Query: 469  SSLVK--GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSD 525
               +K  G+L +    RE  L   +        ++ ++L +I +  N E Q     L   
Sbjct: 1175 DKRLKMEGRLQRAAENRELYLRQII----EKAHDEDKKLKEINFIKNIEAQNKRLDLLEA 1230

Query: 526  FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            F E      E   Q L +     + ++  ++        A  +  ++ + +  +  L   
Sbjct: 1231 FKE-----TEGRLQDLEQERQKRVEEKAAKEAAVERRRQALEKERLLKLEKMNETRLEKE 1285

Query: 586  KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH----IQIHQIESQEA 636
            +R   +  QKE   + +A+  A+   E+   L     +       +I Q + + A
Sbjct: 1286 QRIGKMQEQKERQRQALAREKARDREERLLALQVQQQQTTEELQRKIQQKQLESA 1340


>gi|146162525|ref|XP_001009497.2| hypothetical protein TTHERM_00370670 [Tetrahymena thermophila]
 gi|146146411|gb|EAR89252.2| hypothetical protein TTHERM_00370670 [Tetrahymena thermophila SB210]
          Length = 1534

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 67/213 (31%), Gaps = 7/213 (3%)

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            D   +   + A+  R +        E+       + N      +   +++ Q  +    L
Sbjct: 931  DNTQQSELNAALLQRKELQDNIQELENKIVMLSTENNRLVFMIQEKDKKISQQEVEINHL 990

Query: 477  SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +  + ++  L   L+    +     +    I   + E  +L   +       +    + 
Sbjct: 991  RETDNTQQNELNAALLQRKELQDNIQELENKIVMLSTENNRLAFII-------QEKDKKL 1043

Query: 537  IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
              Q +      E   QL+ ++++              + +  Q    L  +   L+RQ +
Sbjct: 1044 SQQEVEINNLREKAIQLEMKIKENESLKQIQVQQQCAIEEYVQHIEKLNSQIDQLNRQIQ 1103

Query: 597  EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            EI+ Q      +   +      S L ++  ++ 
Sbjct: 1104 EIQNQFFIDQEELHRQHEFQRQSELEQLERRLK 1136



 Score = 37.9 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 88/271 (32%), Gaps = 16/271 (5%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            E +      +  E   +     +++ E+  +       ++  K  +     + +++  L 
Sbjct: 841  EKIEFQQQQYNNELNKQQTELHNQQNEINRYQNELNAALEQIKELHDNKDELENKIVMLS 900

Query: 437  QKYITEHSGYGRYWKKNAR--------HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             +            KK ++                  L  + L + +L       E  ++
Sbjct: 901  TENNRLVFMIQEKDKKMSQLEVEINHLRETDNTQQSELNAALLQRKELQDNIQELENKIV 960

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
            +    +  ++    ++   I     E+  L      D  +Q       + ++  +    E
Sbjct: 961  MLSTENNRLVFMIQEKDKKISQQEVEINHLRET---DNTQQNELNAALLQRKELQDNIQE 1017

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE--KQIA--- 603
            L  ++     +    +   +     + Q   +   L ++   L  + +E E  KQI    
Sbjct: 1018 LENKIVMLSTENNRLAFIIQEKDKKLSQQEVEINNLREKAIQLEMKIKENESLKQIQVQQ 1077

Query: 604  QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            Q   +   +    L S + +++ QI +I++Q
Sbjct: 1078 QCAIEEYVQHIEKLNSQIDQLNRQIQEIQNQ 1108


>gi|114647919|ref|XP_522566.2| PREDICTED: Golgi autoantigen, golgin subfamily a, 3 isoform 2 [Pan
           troglodytes]
          Length = 1391

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 528 EQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           E      E    ++ E       +L ++L+    +        ++     +Q  Q  L L
Sbjct: 647 EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTL 706

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGE-----AEKTAILISILHEVHIQIHQIESQEAMIE 639
            +R + L   ++E    + Q+T   E      +    L +   E+  ++ +++ + A  E
Sbjct: 707 LQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASRE 766


>gi|11558850|emb|CAC17961.1| vimentin [Scyliorhinus stellaris]
          Length = 450

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 509 RYDNNELQKLWSFLFSDFVEQKYF-----LPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
                EL++L   +  +  E+           +  Q+L E+   E+L++ + +   A   
Sbjct: 134 DLYEQELRELRLQIDQNNNEKSRMEVERDNLADDLQKLREKLQDEILQREEAENNLAAFR 193

Query: 564 SATTEA-----NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-IL 617
               +A     ++    +  Q+ +   K+      +  E++ QI     K E +     L
Sbjct: 194 QDVDDACLARLDLERKVESLQEEIMFLKKLH--EEEIRELQAQIQDSQMKVEMDVARPDL 251

Query: 618 ISILHEVHIQIHQI 631
            S LHEV  Q  ++
Sbjct: 252 SSALHEVRSQFDKL 265


>gi|208022632|ref|NP_001129069.1| girdin isoform 1 [Homo sapiens]
 gi|74356043|dbj|BAE44387.1| girdin [Homo sapiens]
          Length = 1870

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 42/334 (12%), Positives = 102/334 (30%), Gaps = 30/334 (8%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
           +   +   K ++++   ++   +      +  +D         K   EK I       + 
Sbjct: 497 EKENQRLSKKVEILENEIVQEKQSLQNCQNLSKD-----LMKEKAQLEKTIETLRENSER 551

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
             K   +          +  +    +    +KD            ++  ++  + I E S
Sbjct: 552 QIKILEQENEHLNQTVSSLRQRSQISAEARVKD-----------IEKENKILHESIKETS 600

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                 +   R   ++    +       + +       +E  LL   I +  I  E+ + 
Sbjct: 601 SKLSKIEFEKRQIKKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEA 660

Query: 505 LA----DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           L     ++  +N +L+K      +   + +    E              ++ L +     
Sbjct: 661 LEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQLDEENLELRRNVESL-KCASMK 719

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE------EIEKQIAQVTAKGEAEKT 614
                     +   ++  ++ L L K     + + E      +IE Q  Q T +   +K 
Sbjct: 720 MAQLQLENKELESEKEQLKKGLELLKASFKKTERLEVSYQGLDIENQRLQKTLENSNKKI 779

Query: 615 AILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             L S L ++ ++   ++     +E     S RL
Sbjct: 780 QQLESELQDLEMENQTLQKN---LEELKISSKRL 810



 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 72/231 (31%), Gaps = 20/231 (8%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    +     L+Q   +   +     +  K+  +  + K  +       +   +   K 
Sbjct: 809  RLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENNVKIGNLEKENKT 868

Query: 481  SLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +E  +   + +    + +E  + +     D   L  L   L S          E++  
Sbjct: 869  LSKEIGIYKESCVRLKELEKENKELVKRATIDIKTLVTLREDLVS----------EKLKT 918

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEI 598
            +       +L  +L++   +        ++     +    +  +  K+   +  +    +
Sbjct: 919  QQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDRYKLLESKLESTLKKSLEIKEEKIAAL 978

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIEGFGKMSG 646
            E ++ + T          L   L  V      + Q + +E M++    +SG
Sbjct: 979  EARLEESTNYN-----QQLRQELKTVKKNYEALKQRQDEERMVQSSPPISG 1024


>gi|45384470|ref|NP_990306.1| chromosome-associated kinesin KIF4 [Gallus gallus]
 gi|18202611|sp|Q90640|KIF4_CHICK RecName: Full=Chromosome-associated kinesin KIF4; AltName:
           Full=Chromokinesin
 gi|603761|gb|AAC59666.1| chromokinesin [Gallus gallus]
          Length = 1225

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 90/251 (35%), Gaps = 26/251 (10%)

Query: 407 HLKNCINHIKDQKLRY--YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
            L+  +  ++D++L+      + ++  L Q   +                    +    Q
Sbjct: 449 DLQKLLETVEDEELKENVEVIRNLQQVLAQFQSESAAAAEAATEMANAEQDAAGEAETGQ 508

Query: 465 RLMQSSLVKG---------------KLSKKPSLREAALLLTLINHPAILQEQYQE----L 505
              +SS                   +L+K  +L+EA L   +I + + L+    +    +
Sbjct: 509 VTKRSSDDFTTQHALRQAQMSKELVELNKALALKEA-LAKKMIQNDSQLEPIQSQYQTNI 567

Query: 506 ADIRYDNNELQKLWSF-LFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGL 562
            D+  + + LQK     + +  + +K     ++ +R  +  +     + +L +++ +   
Sbjct: 568 KDLELEVSNLQKEKEELILALSMAKKDVNQAKLSERRRKRLQELEGQINELKKKLNEQAK 627

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
                E+    V +  Q+   +  +   L RQ +E  ++  Q   + + E    L     
Sbjct: 628 LLKLKESTERTVSKLNQEIREMKNQRVQLMRQMKEDAEKFRQWKQQKDKE-VIQLKERDR 686

Query: 623 EVHIQIHQIES 633
           +   ++ ++E 
Sbjct: 687 KRQYELLKLER 697


>gi|260061292|ref|YP_003194372.1| hypothetical protein RB2501_06825 [Robiginitalea biformata
           HTCC2501]
 gi|88785424|gb|EAR16593.1| hypothetical protein RB2501_06825 [Robiginitalea biformata
           HTCC2501]
          Length = 1186

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 93/332 (28%), Gaps = 18/332 (5%)

Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375
            ++   +GD+  +R     +     H       + + L  G D     R           
Sbjct: 422 TVICYPEGDEEAVREVDLDVPGGTYHTFYYTFPSGLNLESGTDYIVQFRIRDNDGLRGGK 481

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
           V       +      E R      + + L+   K      K Q+    + +  +++    
Sbjct: 482 VRESEAFRLTQYTPEELRDQQLDYQNSLLDGLGKTRETQEKLQEELDAFRKEQQEKRNLE 541

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP--SLREAALLLTLIN 493
           F           R  K+              ++S   K    ++      E   +     
Sbjct: 542 FNDQQKLKDVLNRQLKQERLMEKFSKELGENLESEEAKKDPFRELLQERLERQEIEAR-K 600

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSD--FVEQKYFLPEEIHQ----RLCERGFG 547
           +  +++E  + L  +         L   +       E      E++ +       +    
Sbjct: 601 NAQLMEEMQKVLDQLD-----KDALRERMEEIGKRQEGNRRSMEQLLELTKRYYVQEKSR 655

Query: 548 ELLKQLDRQVRDAGLWSATTEA----NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +L  QL        + S         +     +  ++  +L +    L +  +++++ + 
Sbjct: 656 QLAAQLKELAERQDILSELENMMENFSAEQQDKLRKEFDSLRRELSELEKNNQDLKQPLP 715

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                 + E  +       E+  ++H  E+ E
Sbjct: 716 WKRDTQKEEGASQDQKDAQELLEKLHAPETSE 747



 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 43/312 (13%), Positives = 103/312 (33%), Gaps = 36/312 (11%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
                AF K   E    ++   +++ ++       +   +E   K    +++ ++ +   
Sbjct: 524 QEELDAFRKEQQEKRN-LEFNDQQKLKDVLNRQLKQERLMEKFSKELGENLESEEAKK-- 580

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
               R+ LQ+  ++   E     +  ++  +  DQ        +   +  +        E
Sbjct: 581 -DPFRELLQERLERQEIEARKNAQLMEEMQKVLDQLDKDALRERMEEIGKRQEGNRRSME 639

Query: 485 AAL--------------LLTLINHPAILQEQYQELADI--RYDNNELQKLWSFLFSDFVE 528
             L              L   +   A  Q+   EL ++   +   +  KL     S   E
Sbjct: 640 QLLELTKRYYVQEKSRQLAAQLKELAERQDILSELENMMENFSAEQQDKLRKEFDSLRRE 699

Query: 529 QKYFLP--EEIHQRL---CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                   +++ Q L    +    E   Q  +  ++        E +  + R    +A +
Sbjct: 700 LSELEKNNQDLKQPLPWKRDTQKEEGASQDQKDAQELLEKLHAPETS--ETRDQQSEAAS 757

Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKG--------EAEKTAILISILHEVHIQIHQI-ESQ 634
             K+ +  +R+  E+ + + Q  A G        +AE    ++  L     +   + ++ 
Sbjct: 758 TRKKQKAAARKIRELSEALQQSAASGGGSESTAEDAEMLRQILDNLVVFSFKQETLYDAV 817

Query: 635 EAMIEGFGKMSG 646
           + + EG   +SG
Sbjct: 818 QKLEEGAASLSG 829


>gi|327481366|gb|AEA84676.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           stutzeri DSM 4166]
          Length = 908

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 70/221 (31%), Gaps = 13/221 (5%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y + ++  L Q+  +            +    H   +  +           ++S      
Sbjct: 55  YDKRLQRILTQVLDQADVRAVTILDPERVQRVHAGPRMLTPPPPGDPEGLTRVSSMDHT- 113

Query: 484 EAALLLTLINHPAILQEQ----YQELADIRYDNNELQKL----WSFLFSDFVEQKYFLPE 535
              L+  L  H  +  E      + +  +  + +    L     S L S F+     +  
Sbjct: 114 -RILMPVLSRHLNLADEARGPEEKLIGWLELELSHHNTLLRGYRSLLTSLFLVGTGLIIT 172

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +      R     L+++   V         T    +   +  + A  + +    L   +
Sbjct: 173 ALLALRMSRAISLPLQRVKAAVAQLKDGHLETRLPPLGSHEMDELASGINRMAEALLSAR 232

Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           EE+++ I Q T   + ++    I  +  + + + + E+ EA
Sbjct: 233 EELQQSIDQATE--DVQQNLETI-EIQNIELDLARKEALEA 270


>gi|327469002|gb|EGF14474.1| DNA repair protein RecN [Streptococcus sanguinis SK330]
          Length = 552

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 83/243 (34%), Gaps = 38/243 (15%)

Query: 428 IRDRLQQLFQKYITEHSG----YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           ++ R Q+ F +Y +             +  AR    +     +  ++L  G+ +     R
Sbjct: 157 LKGRYQETFDRYRSLRKQVLILQKNQQEHKARVEMLEFQMAEIESAALKSGEDTALHQER 216

Query: 484 EAAL-----------LLTLINHPAI-----LQEQYQELADIRYDNNELQKLWSFLFS--D 525
           +  L             T++++        ++    +L  I   +   ++L   L     
Sbjct: 217 DRLLNHKFIADTLTNAYTMLDNEDFSSLTNVRSAMNDLESIEDYDPAYKELSGSLSETYY 276

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +E      E+I   L   G   L  Q++ ++      +      + DV   + Q    Y
Sbjct: 277 VLEDVSKRLEDILDGLDFDGDRLL--QVESRLDLINSITRKYGGQVDDVLDYFAQISKEY 334

Query: 586 --------------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                         +  + L R+  E+ ++++Q      A+  A +   L +++++  + 
Sbjct: 335 SLLTGSNLSSEDMDRELKALERELVELAQELSQARHGLAAQLEAEIKQELQDLYMEKARF 394

Query: 632 ESQ 634
           + Q
Sbjct: 395 KVQ 397


>gi|257875765|ref|ZP_05655418.1| predicted protein [Enterococcus casseliflavus EC20]
 gi|257809931|gb|EEV38751.1| predicted protein [Enterococcus casseliflavus EC20]
          Length = 399

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/180 (9%), Positives = 58/180 (32%), Gaps = 8/180 (4%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY---DNNELQKLW 519
           + +  +    + +           +   ++ +  + +E+ Q     +       E ++L 
Sbjct: 135 TNQTNKQESKEQEKDHMIENLSFEIKELILENEQLQEEKNQLKKQQKVVAQQEAEAKELK 194

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
           + L      +K    EE   ++        ++QL+ ++          +      R  + 
Sbjct: 195 ASLVE--ANKKVKDLEEQFAKVDTEKLEAKIQQLEAKLAVQQEEEQQEKQTYEKERAEW- 251

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                 +  + L     ++++Q+A+          +     + E+   I  +  + A ++
Sbjct: 252 --TLKRQEIQQLQEVIADLKQQLAEKEELAANVSASESNEEVAELQATIEALREENAALQ 309


>gi|237842191|ref|XP_002370393.1| structural maintenance of chromosome domain-containing protein
            [Toxoplasma gondii ME49]
 gi|211968057|gb|EEB03253.1| structural maintenance of chromosome domain-containing protein
            [Toxoplasma gondii ME49]
 gi|221502848|gb|EEE28562.1| structural maintenance of chromosome domain-containing protein
            [Toxoplasma gondii VEG]
          Length = 1523

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 80/236 (33%), Gaps = 18/236 (7%)

Query: 408  LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
            + + ++   DQ+ R  ++Q    +LQ  ++          R  ++    R +    +   
Sbjct: 802  MPSFLSSHADQQSRDLWAQPACGKLQA-YRNLRQRQEQLDRLGQQIEEKRKRLAEVESRH 860

Query: 468  QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY----QELADIRY----DNNELQKLW 519
             + + K +L  +   R  A L   +     +  +       LA +          +  + 
Sbjct: 861  DAFIEKEQLLSETRARCQANLEEAVASRQQIDGRLRATMDLLAAVEEGARQATQRVHGIK 920

Query: 520  SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
            + + +   E        +     E+    L  ++    ++  L     E    +VR+   
Sbjct: 921  TLIQNLRRENVSPDTAGLSLS-EEKDATRLPGEIRAMEKEMALLKDEAEQREREVREASS 979

Query: 580  QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +          L +Q E +E++ A+       EK   +   L  V+ ++  ++ +E
Sbjct: 980  EV------DFHLRKQVERLEREEARGRRSEAREKRQEVEERLAAVNRRM--LQEEE 1027


>gi|147644956|sp|Q3V6T2|GRDN_HUMAN RecName: Full=Girdin; AltName: Full=Akt phosphorylation enhancer;
           Short=APE; AltName: Full=Coiled-coil domain-containing
           protein 88A; AltName: Full=G alpha-interacting
           vesicle-associated protein; Short=GIV; AltName:
           Full=Girders of actin filament; AltName:
           Full=Hook-related protein 1; Short=HkRP1
          Length = 1871

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 42/334 (12%), Positives = 102/334 (30%), Gaps = 30/334 (8%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
           +   +   K ++++   ++   +      +  +D         K   EK I       + 
Sbjct: 497 EKENQRLSKKVEILENEIVQEKQSLQNCQNLSKD-----LMKEKAQLEKTIETLRENSER 551

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
             K   +          +  +    +    +KD            ++  ++  + I E S
Sbjct: 552 QIKILEQENEHLNQTVSSLRQRSQISAEARVKD-----------IEKENKILHESIKETS 600

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                 +   R   ++    +       + +       +E  LL   I +  I  E+ + 
Sbjct: 601 SKLSKIEFEKRQIKKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEA 660

Query: 505 LA----DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           L     ++  +N +L+K      +   + +    E              ++ L +     
Sbjct: 661 LEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQLDEENLELRRNVESL-KCASMK 719

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE------EIEKQIAQVTAKGEAEKT 614
                     +   ++  ++ L L K     + + E      +IE Q  Q T +   +K 
Sbjct: 720 MAQLQLENKELESEKEQLKKGLELLKASFKKTERLEVSYQGLDIENQRLQKTLENSNKKI 779

Query: 615 AILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             L S L ++ ++   ++     +E     S RL
Sbjct: 780 QQLESELQDLEMENQTLQKN---LEELKISSKRL 810


>gi|119620506|gb|EAX00101.1| KIAA1212, isoform CRA_b [Homo sapiens]
          Length = 1842

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 42/334 (12%), Positives = 102/334 (30%), Gaps = 30/334 (8%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
           +   +   K ++++   ++   +      +  +D         K   EK I       + 
Sbjct: 497 EKENQRLSKKVEILENEIVQEKQSLQNCQNLSKD-----LMKEKAQLEKTIETLRENSER 551

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
             K   +          +  +    +    +KD            ++  ++  + I E S
Sbjct: 552 QIKILEQENEHLNQTVSSLRQRSQISAEARVKD-----------IEKENKILHESIKETS 600

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                 +   R   ++    +       + +       +E  LL   I +  I  E+ + 
Sbjct: 601 SKLSKIEFEKRQIKKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEA 660

Query: 505 LA----DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           L     ++  +N +L+K      +   + +    E              ++ L +     
Sbjct: 661 LEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQLDEENLELRRNVESL-KCASMK 719

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE------EIEKQIAQVTAKGEAEKT 614
                     +   ++  ++ L L K     + + E      +IE Q  Q T +   +K 
Sbjct: 720 MAQLQLENKELESEKEQLKKGLELLKASFKKTERLEVSYQGLDIENQRLQKTLENSNKKI 779

Query: 615 AILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             L S L ++ ++   ++     +E     S RL
Sbjct: 780 QQLESELQDLEMENQTLQKN---LEELKISSKRL 810



 Score = 37.6 bits (85), Expect = 7.0,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 72/231 (31%), Gaps = 20/231 (8%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    +     L+Q   +   +     +  K+  +  + K  +       +   +   K 
Sbjct: 809  RLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENNVKIGNLEKENKT 868

Query: 481  SLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +E  +   + +    + +E  + +     D   L  L   L S          E++  
Sbjct: 869  LSKEIGIYKESCVRLKELEKENKELVKRATIDIKTLVTLREDLVS----------EKLKT 918

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEI 598
            +       +L  +L++   +        ++     +    +  +  K+   +  +    +
Sbjct: 919  QQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDRYKLLESKLESTLKKSLEIKEEKIAAL 978

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIEGFGKMSG 646
            E ++ + T          L   L  V      + Q + +E M++    +SG
Sbjct: 979  EARLEESTNYN-----QQLRQELKTVKKNYEALKQRQDEERMVQSSPPISG 1024


>gi|34980904|gb|AAH57172.1| Keratin 20 [Mus musculus]
          Length = 431

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 91/278 (32%), Gaps = 27/278 (9%)

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
            +S   ++   K+  E  + +T  + +     +K   N +KD +++    Q +       
Sbjct: 99  EQSNSRLEAQIKQWYETNAPSTIRDYSSYYAQIKELQNQVKDAQVQNA--QCVLQIDNAK 156

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
                             A   D +G S+     +L K  L  +       L L    H 
Sbjct: 157 LAAEDFRLKFETERGMHIAVEADLQGLSKVYDNLTLQKTDLEIQIEELNKDLALLKKEHQ 216

Query: 496 AILQEQYQELADI--------------RYDNN---ELQKLWSFLFSDFVEQKYFLPEEIH 538
             ++   ++L +                  N      + L      +  EQ     + + 
Sbjct: 217 EEVEVLRRQLGNNVNVEVDAAPGLNLGEIMNEMRQRYEVLAQKNLQEAKEQFERQSQTLQ 276

Query: 539 QRL-----CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY-KRFRLLS 592
           Q++       +GF   + +L R  ++  +   +  +    + +  +   A Y  +   + 
Sbjct: 277 QQVTVNTEELKGFEVQVTELRRTYQNLEIELQSHLSMKESLERNLEDVKARYASQLAAIQ 336

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
                +E Q+ Q+ +  + E+     +IL ++  ++ Q
Sbjct: 337 EMLSSLEAQLMQIRS--DTERQNQEHNILLDIKTRLEQ 372


>gi|332813180|ref|XP_515485.3| PREDICTED: girdin isoform 2 [Pan troglodytes]
          Length = 1870

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 42/334 (12%), Positives = 102/334 (30%), Gaps = 30/334 (8%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
           +   +   K ++++   ++   +      +  +D         K   EK I       + 
Sbjct: 497 EKENQRLSKKVEILENEIVQEKQSLQNCQNLSKD-----LMKEKAQLEKTIETLRENSER 551

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
             K   +          +  +    +    +KD            ++  ++  + I E S
Sbjct: 552 QIKILEQENEHLNQTVSSLRQRSQISAEARVKD-----------IEKENKILHESIKETS 600

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                 +   R   ++    +       + +       +E  LL   I +  I  E+ + 
Sbjct: 601 SKLSKIEFEKRQIKKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEA 660

Query: 505 LA----DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           L     ++  +N +L+K      +   + +    E              ++ L +     
Sbjct: 661 LEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQLDEENLELRRNVESL-KCASMK 719

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE------EIEKQIAQVTAKGEAEKT 614
                     +   ++  ++ L L K     + + E      +IE Q  Q T +   +K 
Sbjct: 720 MAQLQLENKELESEKEQLKKGLELLKASFKKTERLEVSYQGLDIENQRLQKTLENSNKKI 779

Query: 615 AILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             L S L ++ ++   ++     +E     S RL
Sbjct: 780 QQLESELQDLEMENQTLQKN---LEELKISSKRL 810



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 72/231 (31%), Gaps = 20/231 (8%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    +     L+Q   +   +     +  K+  +  + K  +       +   +   K 
Sbjct: 809  RLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENNVKIGNLEKENKT 868

Query: 481  SLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +E  +   + +    + +E  + +     D   L  L   L S          E++  
Sbjct: 869  LSKEIGIYKESCVRLKELEKENKELVKRATIDIKTLVTLREDLVS----------EKLKT 918

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEI 598
            +       +L  +L++   +        ++     +    +  +  K+   +  +    +
Sbjct: 919  QQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDRYKLLESKLESTLKKSLEIKEEKIAAL 978

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIEGFGKMSG 646
            E ++ + T          L   L  V      + Q + +E M++    +SG
Sbjct: 979  EARLEESTNYN-----QQLRQELKTVKKNYEALKQRQDEERMVQSSPPISG 1024


>gi|260900667|ref|ZP_05909062.1| MukB N-terminal domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308106730|gb|EFO44270.1| MukB N-terminal domain protein [Vibrio parahaemolyticus AQ4037]
          Length = 1467

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 58/162 (35%), Gaps = 26/162 (16%)

Query: 499 QEQYQELADIRYDNNELQKLWSF----LFSDFVEQKYFLPEEIHQRLCER--GFGELLKQ 552
           +E  ++ A   +D+ ++Q+L+      + +         PE+    + E+      +L  
Sbjct: 798 EEVVEKHAKAAFDSQKMQRLYQAFNQFVANHIQVAFEADPEQALANVREKRGQIARVLAD 857

Query: 553 LDRQVRDAGLWSATTEANIVDVRQ-----GYQQALALYKRFRLLSRQKEEI--------- 598
           L+ + +       T++  +  + +        +   L  RF  L  +  ++         
Sbjct: 858 LEAKEQQHRSQLQTSKQALSSLDKLAPNMALIEDDTLQARFDELEEKIAQLSEAKAFLNN 917

Query: 599 -EKQIAQVTA-----KGEAEKTAILISILHEVHIQIHQIESQ 634
             K +A++         + E+   L +       Q+ +++ Q
Sbjct: 918 HAKAVAELEKIASALDADPEQFDALEAEYKAADEQLQELKKQ 959


>gi|257153461|ref|NP_001158010.1| disrupted in schizophrenia 1 protein isoform b [Homo sapiens]
 gi|238066679|gb|ACR40047.1| disrupted in schizophrenia 1 isoform 10 [Homo sapiens]
          Length = 803

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 95/354 (26%), Gaps = 45/354 (12%)

Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390
              + DL             +      DP S        A       S       W    
Sbjct: 271 TRVSADLAQAARNSSRPERDMHSLPDMDPGSSSSLDPSLAGCGGDGSSGSGDAHSWDTLL 330

Query: 391 ENRSFNTPDERAELEIHLKNCINHIK------DQKLRYYY--SQAIRDRLQQLFQKYITE 442
                   D        ++     +K      D      Y  ++ ++ RL+ L Q+ I+ 
Sbjct: 331 RKWEPVLRDCLLRNRRQMEVISLRLKLQKLQEDAVENDDYDKAETLQQRLEDLEQEKISL 390

Query: 443 HSGYGRYWKKNARH----RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL--------- 489
           H          +        Q   + R   +    G  +  P   E  LL          
Sbjct: 391 HFQLPSRQPALSSFLGHLAAQVQAALRRGATQQASGDDTHTPLRMEPRLLEPTAQDSLHV 450

Query: 490 ------TLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYF--LPEEIHQR 540
                  L+     LQ++ + L    +      Q+L   +     + ++       +  +
Sbjct: 451 SITRRDWLLQEKQQLQKEIEALQARMFVLEAKDQQLRREIEEQEQQLQWQGCDLTPLVGQ 510

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL---------- 590
           L      E+ K L   +  AG      E     +R   ++  +L    +           
Sbjct: 511 LSLGQLQEVSKALQDTLASAGQIPFHAE-PPETIRSLQERIKSLNLSLKEITTKVCMSEK 569

Query: 591 ----LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
               L ++  +IE Q+  +        +        ++  +I  + S+   +EG
Sbjct: 570 FCSTLRKKVNDIETQLPALLEAKMHAISGNHFWTAKDLTEEIRSLTSEREGLEG 623


>gi|125717534|ref|YP_001034667.1| DNA repair and genetic recombination [Streptococcus sanguinis SK36]
 gi|125497451|gb|ABN44117.1| DNA repair and genetic recombination, putative [Streptococcus
           sanguinis SK36]
 gi|327473377|gb|EGF18797.1| DNA repair protein RecN [Streptococcus sanguinis SK408]
          Length = 552

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 84/243 (34%), Gaps = 38/243 (15%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ----KGPSQRLMQSSLVKGKLSKKPSLR 483
           ++ R Q+ F +Y +         K    H+ +    +     +  ++L  G+ +     R
Sbjct: 157 LKGRYQETFDRYRSLRKQVLILQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQER 216

Query: 484 EAAL-----------LLTLINHPAI-----LQEQYQELADIRYDNNELQKLWSFLFS--D 525
           +  L             T++++        ++    +L  I   +   ++L   L     
Sbjct: 217 DRLLNHKFIADTLTNAYTMLDNEDFSSLTNVRSAMNDLESIEDYDPAYKELSGSLSETYY 276

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +E      E+I   L   G   L  Q++ ++      +      + DV   + Q    Y
Sbjct: 277 VLEDVSKRLEDILDGLDFDGDRLL--QVESRLDLINSITRKYGGQVDDVLDYFAQISKEY 334

Query: 586 --------------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                         +  + L R+  E+ ++++Q      A+  A +   L +++++  + 
Sbjct: 335 SLLTGSNLSSEDMDRELKALERELVELAQELSQARHGLAAQLEAEIKQELQDLYMEKARF 394

Query: 632 ESQ 634
           + Q
Sbjct: 395 KVQ 397


>gi|119589381|gb|EAW68975.1| ecotropic viral integration site 5-like, isoform CRA_c [Homo
           sapiens]
          Length = 838

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 77/219 (35%), Gaps = 13/219 (5%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE- 484
           + ++ +LQ+L   +        R     A  R      Q  +       +  +K  + E 
Sbjct: 543 RELKLQLQELSDTWQRPLGPSPRGSWAEADRRLLGFTPQAHLARGGRWKESPRKLVVGEL 602

Query: 485 -AALLLTLINHPAILQEQYQELADI-RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-RL 541
              L+   +     L E  +    +   +  +   +   L +    ++  L E++     
Sbjct: 603 QDELMSVRLREAQALAEGRELRQRVVELETQDH--IHRNLLNRVEAERAALQEKLQYLAA 660

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             +G    L +  R+  +A   S   E   V +R+    A     R R+   + +  E +
Sbjct: 661 QNKGLQTQLSESRRKQAEAECKS-KEEVMAVRLREADSMAAVAEMRQRIAELEIQREEGR 719

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           I       ++ +       + E+  QI +++++  +++G
Sbjct: 720 IQGQLNHSDSSQY------IRELKDQIEELKAEVRLLKG 752


>gi|50897852|ref|NP_060554.3| girdin isoform 2 [Homo sapiens]
 gi|121582194|dbj|BAF44475.1| PKB/Akt-binding protein [Homo sapiens]
 gi|124376864|gb|AAI32737.1| Coiled-coil domain containing 88A [Homo sapiens]
          Length = 1843

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 42/334 (12%), Positives = 102/334 (30%), Gaps = 30/334 (8%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
           +   +   K ++++   ++   +      +  +D         K   EK I       + 
Sbjct: 497 EKENQRLSKKVEILENEIVQEKQSLQNCQNLSKD-----LMKEKAQLEKTIETLRENSER 551

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
             K   +          +  +    +    +KD            ++  ++  + I E S
Sbjct: 552 QIKILEQENEHLNQTVSSLRQRSQISAEARVKD-----------IEKENKILHESIKETS 600

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                 +   R   ++    +       + +       +E  LL   I +  I  E+ + 
Sbjct: 601 SKLSKIEFEKRQIKKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEA 660

Query: 505 LA----DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           L     ++  +N +L+K      +   + +    E              ++ L +     
Sbjct: 661 LEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQLDEENLELRRNVESL-KCASMK 719

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE------EIEKQIAQVTAKGEAEKT 614
                     +   ++  ++ L L K     + + E      +IE Q  Q T +   +K 
Sbjct: 720 MAQLQLENKELESEKEQLKKGLELLKASFKKTERLEVSYQGLDIENQRLQKTLENSNKKI 779

Query: 615 AILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             L S L ++ ++   ++     +E     S RL
Sbjct: 780 QQLESELQDLEMENQTLQKN---LEELKISSKRL 810


>gi|76645428|ref|XP_592864.2| PREDICTED: 5-azacytidine induced 1 isoform 1 [Bos taurus]
          Length = 1089

 Score = 39.1 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 85/294 (28%), Gaps = 25/294 (8%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           +    +     ++  K+  E  S      R +        I  I  + L     + I   
Sbjct: 658 KDREAQLQEQHELEIKKLKELMSATEKVRREKWINEKTRKIKEITVKGLEPEIQKLIAKH 717

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            Q++ +      +   +  ++ A+H  ++    R       +    ++    +      L
Sbjct: 718 KQEVKKLKGLHATELLQAEERAAQHYGRQAEELREHLEREKEALGRQEWERAQQRFEQHL 777

Query: 492 IN------------HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-- 537
                         +  + +E+ +          EL +L   L          L  E   
Sbjct: 778 EQEQRALQQQRRRLYNEVAEEKERLGQQAARQRAELDELRRQLEESSSAGGRALRAEFEK 837

Query: 538 ----HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                +R  +     L  QL+ + +     SA  E   +  R+   +      R + +  
Sbjct: 838 GKEEQERRHQMELKALKDQLEVERQMWEANSAKKEEAWLLNRERELKEEIRKGRDKEIEL 897

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILIS-------ILHEVHIQIHQIESQEAMIEG 640
               +E  + Q   + E      +          L E+     +++ + A ++G
Sbjct: 898 VIHRLEADMTQAREESERAAENRVKRLRDKYEAELSELEQSERKLQERCAELKG 951


>gi|327262539|ref|XP_003216081.1| PREDICTED: melanoma inhibitory activity protein 3-like [Anolis
            carolinensis]
          Length = 1895

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 83/237 (35%), Gaps = 32/237 (13%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             R+Q+   +         +  +  +    + G   +L Q S    + +      E  +L 
Sbjct: 1368 RRVQEENVRLKKSKEQLLQEAEGWSERHAELGEQIKLYQKSQKDIEEALAYKENEIEVLT 1427

Query: 490  TLINHPAILQEQYQ---------ELADIRYDNNELQKLWSFL------------FSDFVE 528
              I     L    +         +LA+    +   +K+ S +             S   E
Sbjct: 1428 NCIMQLKQLDADSESETKRDEGNDLANGEISDTRNEKMKSQIKQMMDVSRVKTTLSIIEE 1487

Query: 529  QKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEAN-------IVDVRQGYQQ 580
            ++  L  +++  +  R    E +K+L+ +        +  E+        +  + + YQQ
Sbjct: 1488 ERDNLRSKLNDEVSSRHELEEQIKKLEHESCSLQTVKSQLESECKTLQQKVEILNELYQQ 1547

Query: 581  -ALALYKRFRLLSRQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIESQ 634
              +AL K+      +++E E++++    K     E+  +    + E+  ++ + E  
Sbjct: 1548 KEMALQKKLTQEEYERQEKEQKLSAADEKAILAVEEVKVYKQRIQEMEEELQKTERS 1604


>gi|326914706|ref|XP_003203664.1| PREDICTED: girdin-like isoform 2 [Meleagris gallopavo]
          Length = 1856

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 88/254 (34%), Gaps = 15/254 (5%)

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKD-QKLRYYYSQAIRDRLQQLFQKYITEHSG 445
            +ETEN +    +   E    L      IK  +K   +Y +   +R ++L  +       
Sbjct: 582 MKETENENKILHESIKEASSKLNKLEFEIKQVKKEMEHYKEK-AERAEELENELHRLEKE 640

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
                KK A         + L +    +       + +    L +L N P  L+   +E 
Sbjct: 641 NEVLQKKIANLNITCEKIEALEK----ENSDLDMENRKLKKTLDSLKNLPFQLESLEKEN 696

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
           + +  +N EL++            K    +     L  +      +QL + +        
Sbjct: 697 SQLDEENLELRR-------RIESSKCTSIKMAQLELENKELESEKEQLKKSLELMKASFK 749

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
            +E   V  +    +   L K     +++ +++E ++  + ++   +     +  L    
Sbjct: 750 KSERLEVSYQGLDTENQRLQKALENSNKKIQQLESELQDLESEN--QTLQKNLEELVISS 807

Query: 626 IQIHQIESQEAMIE 639
            ++ Q+E +  ++E
Sbjct: 808 KRLEQLEKENKLLE 821


>gi|301610455|ref|XP_002934764.1| PREDICTED: LOW QUALITY PROTEIN: myosin-9-like [Xenopus (Silurana)
            tropicalis]
          Length = 1947

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 84/253 (33%), Gaps = 28/253 (11%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            ++    E E        ++ ELE  L +  + +++++ R    QA + ++Q    +   +
Sbjct: 879  EIELCAEAEEMRARLATKKQELEEILHDLESRVEEEEERCQILQADKKKMQHNIVELEEQ 938

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                    +K    +       + ++  ++  +       +E  L      +   + E  
Sbjct: 939  LEEEEAARQKLQLEKVTVEAKMKKLEEDVLVLEDQNSKLGKEKKL------YEERIAEFT 992

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
              LA+    +  L KL +                      E    +L ++L R+ +    
Sbjct: 993  TNLAEEEEKSKSLAKLKNK--------------------HETMISDLEERLRREEKQRQE 1032

Query: 563  WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL--ISI 620
               T      D    + Q   L  +   L  Q  + E+++    A+ E E       +  
Sbjct: 1033 LEKTRRKLEGDSTDLHDQIAELQAQIAELKMQLAKKEEELQAALARVEEESAQKNIALKK 1092

Query: 621  LHEVHIQIHQIES 633
            + E+  QI +++ 
Sbjct: 1093 IRELESQISELQE 1105


>gi|258544839|ref|ZP_05705073.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
 gi|258519944|gb|EEV88803.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
          Length = 1128

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 3/117 (2%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS-ATTEANIVDVRQG 577
            + L +   + +    E +          E  + L  ++ +  L   A  E +    +Q 
Sbjct: 782 RAHLAAGDKQAQRLAAERLEAEETLAALQEQSEALALELEEKHLSHEALEETHQQHEQQR 841

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            Q A A+ ++   L R++E + ++  Q       E+       L ++  Q+ +I ++
Sbjct: 842 AQTARAVEEQAHHLHREQETLRER--QHQRALAEERLNHHQEHLAQIQQQLQRITAE 896


>gi|198473987|ref|XP_002132604.1| GA25805 [Drosophila pseudoobscura pseudoobscura]
 gi|198138199|gb|EDY70006.1| GA25805 [Drosophila pseudoobscura pseudoobscura]
          Length = 18482

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 34/325 (10%), Positives = 93/325 (28%), Gaps = 13/325 (4%)

Query: 320  CFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESL 379
              D      +            L    +         +    ++         +L   SL
Sbjct: 7100 ILDEIAADYQTLKDESSKRGKSLDDLLQGRKAFEDSMKKMGDWLNEMETATEGELRTTSL 7159

Query: 380  PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI------KDQKLRYYYSQAIRDRLQ 433
            P+++       +       +    L   +      I       D+       + ++DR  
Sbjct: 7160 PVLEEQLAHYKKLL--QNAENMGGLCNDVSEQGKSILPTLSNADKLKLNDDIKNMKDRYG 7217

Query: 434  QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLSKKPSLREAALLLTLI 492
            ++        +  G + KK    + +     + + +   +  +L++    R   +   L 
Sbjct: 7218 RVKNTIDDRVNALGDHIKKYKDAKSRLADCSQFLSTIQQRMRELNRPIGSRIEDVQDLLG 7277

Query: 493  NHPAILQEQYQ---ELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +  IL+E      ++ D++ D+  ELQ + +         +  L       L    F  
Sbjct: 7278 AYEGILKELKDSKSKMGDMQMDDLPELQSILAQQDDMIKLIEDQLAHLRQLLLLREQFIA 7337

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L+ ++   +          E +   +     +   +  + +           +  ++ ++
Sbjct: 7338 LINEIISFIMKYTDVIIDIENSPDSLEDKINKYDDVIVKIQECEGVLASANDKGQKIASE 7397

Query: 609  GEAEKTAILISILHEVHIQIHQIES 633
            G A     +   L  +  Q+  +  
Sbjct: 7398 GNAADKNSITEQLQSLKNQLQNLRK 7422


>gi|162452810|ref|YP_001615177.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161163392|emb|CAN94697.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 568

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 36/346 (10%), Positives = 86/346 (24%), Gaps = 51/346 (14%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           +      A    DL    +I    +   L     DP S+I  +       L   +  + D
Sbjct: 210 ERSTTIDAGPPADLYSLGVIMFEMITQRLPFDAPDPASWILKHMNEQPPHLKELAPEMPD 269

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
            L +  +   +    +   +    L                  A   R+           
Sbjct: 270 ALDRLVSALMAKEPSERPVDAYRVLAELEEI------------AAASRIALPPPPEAMPR 317

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
               R           +      M +             +  AL   +  H  +      
Sbjct: 318 DSAVRSRGAGRDPWVSRLELFERMTARAFGASAPVDIQRQLEALRGVVREHADLRSRALD 377

Query: 504 ELADIR-------------------------YDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           E   +                              E +   + +       + F+PE + 
Sbjct: 378 EQRRLEGVAEEWRDGRMQIGRAMDALTVDASLTREEARSFRARVAPLSAATQAFVPEVLI 437

Query: 539 QRLCE----------RGFGELLKQLDRQVRDAGLWSATTEANIV---DVRQGYQQALALY 585
                            + EL     +       W A+ +A+     +      +   + 
Sbjct: 438 AHKEAVRWEGRCGFAEPYLELAASYRKLAELVEGWYASRKADYEAESEAIAREHEVAEVD 497

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            + + L  + EE+++Q+ +   +   E+ A +   + ++  ++  +
Sbjct: 498 AQIKKLRERLEELDRQL-EARRRESQERIAEIGRRVDQLDAELLHL 542


>gi|145525491|ref|XP_001448562.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124416117|emb|CAK81165.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1202

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 35/320 (10%), Positives = 96/320 (30%), Gaps = 16/320 (5%)

Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376
           +    D D  G +      +           V     +  +     ++   +        
Sbjct: 662 VFEIKDKDARGQKN----KEGYQQRYADDIIVTKEDKADLKTTRDNLKTQLQDITAPQNA 717

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-RYYYSQAIRDRLQQL 435
            ++   +   K+ T+  S      +   +  ++      K  +  R    +     +Q+L
Sbjct: 718 INISSKEDQIKQLTDKESTLKQQYKVAYDTLVEKKRETEKHIQETRKQIMEEFEAEIQEL 777

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q   ++ +     ++K    ++            L + + + +    E      L+   
Sbjct: 778 EQNQQSKVNKEAEKYEKTKNEKEIHQTKYEKEIGKLQR-EHTDELKKLEKDYDARLLEER 836

Query: 496 AILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
              +   +E    +    E ++++      +    +    ++I Q+  ++G      ++ 
Sbjct: 837 QQRERMEKEYNKEKEKYRETIEQIRKETIGEIEALEEQNQQQILQK-TDQGLKAK-SEVS 894

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK-GEAEK 613
              +         E    +++   +Q   L  +   L    EE  KQI       GE E 
Sbjct: 895 MTKKKIQSLLQEEEKQNENLKDYNEQKKQLDDQNHQLKIAIEEQLKQIQDKDKTIGEKE- 953

Query: 614 TAILISILHEVHIQIHQIES 633
                  ++E+  +  ++E 
Sbjct: 954 -----RKIYELKKRSQELEK 968


>gi|115711984|ref|XP_789361.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115964438|ref|XP_001190645.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 2381

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 53/141 (37%), Gaps = 19/141 (13%)

Query: 507  DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
               + ++E  +          + +     +I Q L E    + + + +  +R   L    
Sbjct: 1821 KEDFRHSEHNR----------QLREQELRQIQQELTEALRKQSIAEANLDIRKKALDDQH 1870

Query: 567  TEAN--IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL------I 618
             +      +++Q   Q L + +  R L  + EE++ ++ Q    G    +  L      +
Sbjct: 1871 RDKEGVKSEMKQVQDQVLVMQQERRTLETKIEELQNELLQAER-GSMATSQQLVSTHKSL 1929

Query: 619  SILHEVHIQIHQIESQEAMIE 639
              L E+  ++   +++ + +E
Sbjct: 1930 QKLSELEERLRHFQAENSRLE 1950


>gi|25991445|gb|AAN76835.1|AF453411_1 colicin E1 [Escherichia fergusonii]
          Length = 522

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/126 (11%), Positives = 37/126 (29%), Gaps = 8/126 (6%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           Q+L   +           P                    +   +    +   E    +  
Sbjct: 92  QRLKDIVNEALRHNASRTPSA-------TELAHANNAAMQAEAERLRLAKAEEKARKEAE 144

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV-HIQIHQIESQ 634
              +      +R + + R+K E E+Q+    A+ +        +   E+   ++   +S+
Sbjct: 145 AAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQKKLSAAQSE 204

Query: 635 EAMIEG 640
              ++G
Sbjct: 205 VVKMDG 210


>gi|108804063|ref|YP_644000.1| hypothetical protein Rxyl_1222 [Rubrobacter xylanophilus DSM 9941]
 gi|108765306|gb|ABG04188.1| hypothetical protein Rxyl_1222 [Rubrobacter xylanophilus DSM 9941]
          Length = 565

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 66/198 (33%), Gaps = 13/198 (6%)

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           LR +Y + +R        +   + +   +   +  R +          +   ++ +    
Sbjct: 280 LRRHYEERLRAE-----DERRKQETWALQERLEELRAQRDAERRAYTARLKQLEAERLAS 334

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            S  E  L   +      +    + +AD+     E + L      + VE +  L      
Sbjct: 335 KSRAEENLERVVARFGEEISHLERRIADLEGALEESEGLRKRFEDELVELRGRLEARREP 394

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               RG  E   +L R++ +        +  I  +R+  +QA    +R        EE+E
Sbjct: 395 LTPPRG--ETDDELRRKLSELEAEKLLAQEQIEGLRRELEQAREEGRRNA------EELE 446

Query: 600 KQIAQVTAKGEAEKTAIL 617
           K + ++    + E+    
Sbjct: 447 KALDKLRRLSDPERRLRE 464


>gi|326929539|ref|XP_003210920.1| PREDICTED: Golgin subfamily A member 3-like [Meleagris gallopavo]
          Length = 1516

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 40/328 (12%), Positives = 108/328 (32%), Gaps = 22/328 (6%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           + D     AA+  I      +    +         ++    +     T  ++L    L L
Sbjct: 661 EADMLDQEAAFMQIQEAKTMVEEDLQRKLEEFEDEKEQLQKMADSAATLEQELDQVKLTL 720

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
                + E+  +      ++  +   + +      D     Y    ++ RL++      +
Sbjct: 721 HQRDLQLESLQQEHLDLMKQFTVTQEMLHTKEQTLDDLQTQY--DELKARLEEFQSDATS 778

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
           +         +          ++   +      K   + +   + +L  L    AI   Q
Sbjct: 779 KDDMIQYLQNEKIVLEVALQTAKASQEQLDEGTKRLGEDTEVTSEILEQLRQEMAIKSSQ 838

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYF---------LPEEIHQRLC------ERGF 546
            + L      N  L+K    +   F++QK             +++   L       +   
Sbjct: 839 VENLQQE---NGSLKKQVQKVKEQFLQQKVMVEAYRRDASSKDQLISELKATKKRLDSEM 895

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            EL ++L +   +     +       +V +  QQ + +    + + ++++E+E ++  + 
Sbjct: 896 KELKRELLQIQVEKQSLESEHSKLQKEVTEVRQQMVEIENHLQSVQKERDEMETRLQSL- 954

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
            + + E+ A L      + +Q+ Q++ +
Sbjct: 955 -QFDKEQMASLAEANQTLKLQVEQMQEE 981


>gi|319949225|ref|ZP_08023310.1| ATP-dependent Clp protease ATP-binding subunit [Dietzia cinnamea
           P4]
 gi|319437110|gb|EFV92145.1| ATP-dependent Clp protease ATP-binding subunit [Dietzia cinnamea
           P4]
          Length = 850

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 14/130 (10%)

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   +    +L   + S   E      E I +RL        L++         L +  
Sbjct: 394 AIDLVDEAASRLKMEIDSRPEEIDA--AERIVRRLEIEEVA--LQKETDAASKDRLVALQ 449

Query: 567 TEANIVDVRQGYQQALALYKRFRL-------LSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618
            E    D ++   +  A ++  +        +  + + +  +  +    G+  + A +  
Sbjct: 450 AELA--DAKEKLSELTARWQNEKTAIEGVQRIKEELDALRTESERAERDGDYARVAEIRY 507

Query: 619 SILHEVHIQI 628
             L E+  Q+
Sbjct: 508 GRLPELEKQL 517


>gi|331219761|ref|XP_003322557.1| DNA repair protein RAD50 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309301547|gb|EFP78138.1| DNA repair protein RAD50 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1291

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 93/271 (34%), Gaps = 25/271 (9%)

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
            ++   + +   +    +E  EL+  +KN    ++    +   +  +++ L  L Q  I E
Sbjct: 775  ELEICKRSAADASRMSEEIDELQNEIKNLERDLESSGTKRT-ADQVQEELDDL-QLQIGE 832

Query: 443  HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                      +   +     +       L     SK+   +E        N  A  ++  
Sbjct: 833  SKRELESHIADRDRKRMAIHNLESEIHQLELNLNSKRQQKKERD------NFEAQREDFK 886

Query: 503  QELADIRYDNNE----LQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQV 557
            +E+AD+     E    L+K    L +  +E +    E +     +        K L R  
Sbjct: 887  KEIADLEQKTKEIEETLKKFAEPLRAKEIELEEIRAENVAAEAEQTNELQSYNKSLSRLE 946

Query: 558  RDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAE---- 612
                      E +I    +  Q+ + AL ++ + +++Q  +++  +  +  + +      
Sbjct: 947  TINSEIQRFNEMDIGANSERCQREIQALVEKIKAITQQISKLQDDLQALDKEQDRAKALE 1006

Query: 613  -------KTAILISILHEVHIQIHQIESQEA 636
                   +       + E+  +I +I+  +A
Sbjct: 1007 RNITDNIRYRNYKLEIQELEDKISRIDVGKA 1037


>gi|308158437|gb|EFO61109.1| Coiled-coil protein [Giardia lamblia P15]
          Length = 1675

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/269 (11%), Positives = 81/269 (30%), Gaps = 11/269 (4%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
              +       +   +         R     +    ++   +   LK   N +++ + + 
Sbjct: 535 YLEHLYAKLSDMTTAAAGTNLEERIRTLNADNVQKEEDLNTITSKLKTSDNKLRELEQKL 594

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              Q  +++L++       E+    +  +      + K      +   L + +   K   
Sbjct: 595 LQEQQGKEQLREQLSSLQDEYEDLSKQLRMKEAEIEDKIMQINTLSPQLDEARYRIKRLE 654

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
           +E   L +   H + L    Q+L +     +EL +    L       +    + +     
Sbjct: 655 KEYTDLKSTHIHNSELDPYRQQLTEKDIKIDELNRELQALQELQATGEQAHSDLMRD--- 711

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                   K+L              +  I  +    +     + + R      E+ E +I
Sbjct: 712 -------FKELTDTAEKRDRELVEKDLTIDRLLDAIRVQEDSFTKLRTSIICMED-EHRI 763

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQI 631
           +++ ++ + E    L     E+  Q+  +
Sbjct: 764 SEMASQQQKECLEELTKAREELEAQVQAL 792


>gi|296198601|ref|XP_002746786.1| PREDICTED: filamin-A-interacting protein 1 isoform 2 [Callithrix
           jacchus]
          Length = 1213

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 97/364 (26%), Gaps = 22/364 (6%)

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           +   DV+ + +              +    ++L  L    +L  +             +L
Sbjct: 92  QAREDVIHMLKTEKTKPEVLEAHYGSAEPEKVLRVLHRDAILAQEKSIGEDVYEKPISEL 151

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRETENR 393
                        +L                   E    +    +    D     E E  
Sbjct: 152 DRLEEKQKETYRRMLEQLLL--AEKCHRRTVYELENEKHKHTDYMNKSDDFTNLLEQERE 209

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                 E+ +     K   N  +  KLR    +     L  + ++ +       +  K  
Sbjct: 210 RLKKLLEQEKAYQARKEKENAKRLNKLRDELVKLKSFALMLVDERQMHIEQLGLQSQKVQ 269

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQELADIRYD 511
              +  +   ++L   +    +  +K    E         H A    QE  +  A +   
Sbjct: 270 DLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDF-----EHKASRFSQEHEEMNAKLANQ 324

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
            +  ++L   L       +       + +  E    EL  ++ +         A  E   
Sbjct: 325 ESHNRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLR 384

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             V +   +   + K       Q  E+ K++ +         +  L   + ++  ++ ++
Sbjct: 385 KRVLEMEGKDEEIMKT----ESQCRELRKKLQEEEHH-----SKELKLEVEKLQKRMSEL 435

Query: 632 ESQE 635
           E  E
Sbjct: 436 EKLE 439


>gi|164708137|gb|ABY67191.1| pneumococcal surface protein A [Streptococcus pneumoniae]
          Length = 472

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L ++       +  L++++ +  +      A+ 
Sbjct: 245 ELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLEKEISNLEI--LLGGADP 302

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
            D     Q  LA   +   L++++ E+EK +  +  +G+ +      +   E+  +  ++
Sbjct: 303 EDDTAALQNKLAA--KQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDKKADEL 360

Query: 632 ESQEAMIE 639
           +++ A +E
Sbjct: 361 QNKVADLE 368



 Score = 37.2 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 45/127 (35%), Gaps = 1/127 (0%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           +   L   L    VE K    E++   +          Q         L  A  +     
Sbjct: 161 DYATLKVALAKKEVEAKELEIEKLQYEISTLEQEVATAQHQVDNLKKLLAGADPDDGTEV 220

Query: 574 VRQGYQQ-ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +     +    L  +   L++++ E+EK +  +  +G+ +      +   E+  +  +++
Sbjct: 221 IEAKLNKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQ 280

Query: 633 SQEAMIE 639
           ++ A +E
Sbjct: 281 NKVADLE 287


>gi|114669066|ref|XP_001165099.1| PREDICTED: myosin-4 isoform 1 [Pan troglodytes]
          Length = 1945

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 83/277 (29%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +   +   +    +       +      ELE   K     ++D +      
Sbjct: 1358 EEEQEAKAELQRGMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1417

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +Y   +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1418 NSKYASLEKTKQRLQNEVEDLMIDVERSNAACIALDKKQRNFDKVLAEWKQKYEETQAEL 1477

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+  S L     E         
Sbjct: 1478 EASQKESRSLSTELFKVKNAYEESLDHLETLKRENKNLQQEISDLTEQIAEGGKH----- 1532

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  + ++ +     +       R   +  +  +
Sbjct: 1533 ------------IHELEKVKKQLDHEKSELQTSLEEAEASLEHEEGKILR---IQLELNQ 1577

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1578 VKSEIDRKIAEKDEELDQLKRNHLRVVESMQSTLDAE 1614


>gi|91762912|ref|ZP_01264877.1| hypothetical protein PU1002_06566 [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718714|gb|EAS85364.1| hypothetical protein PU1002_06566 [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 402

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 96/263 (36%), Gaps = 8/263 (3%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           EK+I +   +     K E++         R E E   +     IK++KL+  + +  R R
Sbjct: 115 EKIIKQQQQIERKKIKLESQRIKAEEQKLRDEEEEKERQDDLKIKEEKLKLEFFEKQRIR 174

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            +Q   K   +        K     +  K   +RL    + K K + +  + E   L   
Sbjct: 175 QEQQKAKIENDKLMALEKQKAREAKQKIKDEEERLKNIEIDKQKKNMQKLIEEEHKLNYQ 234

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
                 +++  +++        E++++         E      +E   RL E+   E L 
Sbjct: 235 KQKLEEIEQSIKKI--------EIERIREKEIKILKEADELREKEKQLRLKEQLEIEELN 286

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           +L     +        +     +R    +   + +   L  ++ ++ E++I +   K + 
Sbjct: 287 ELRLNELNQRKIQEELQLKEEKIRLENLREQKIIQARILEEKRIKDEEERIKEWERKFDE 346

Query: 612 EKTAILISILHEVHIQIHQIESQ 634
           E+ A    ++ + + Q+ + + Q
Sbjct: 347 EQIAKEEELIKKFNDQLIKEKEQ 369


>gi|71983122|gb|AAZ57430.1| structural maintenance of chromosome 3 [Toxoplasma gondii]
          Length = 1491

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 80/236 (33%), Gaps = 18/236 (7%)

Query: 408  LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
            + + ++   DQ+ R  ++Q    +LQ  ++          R  ++    R +    +   
Sbjct: 802  MPSFLSSHADQQSRDLWAQPACGKLQA-YRNLRQRQEQLDRLGQQIEEKRKRLAEVESRH 860

Query: 468  QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY----QELADIRY----DNNELQKLW 519
             + + K +L  +   R  A L   +     +  +       LA +          +  + 
Sbjct: 861  DAFIEKEQLLSETRARCQANLEEAVASRQQIDGRLRATMDLLAAVEEGARQATQRVHGIK 920

Query: 520  SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
            + + +   E        +     E+    L  ++    ++  L     E    +VR+   
Sbjct: 921  TLIQNLRRENVSPDTAGLSLS-EEKDATRLPGEIRAMEKEMALLKDEAEQREREVREASS 979

Query: 580  QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +          L +Q E +E++ A+       EK   +   L  V+ ++  ++ +E
Sbjct: 980  EV------DFHLRKQVERLEREEARGRRSEAREKRQEVEERLAAVNRRM--LQEEE 1027


>gi|304398564|ref|ZP_07380436.1| conserved hypothetical protein [Pantoea sp. aB]
 gi|304353775|gb|EFM18150.1| conserved hypothetical protein [Pantoea sp. aB]
          Length = 358

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 20/232 (8%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                ++++Q   +     +  GR    +   +  +  +           +L ++P + E
Sbjct: 26  LDQYLEQIRQAVNETPDLSTKKGRDRIASLAAKVSRSKTAIEKPGRDYLKRLKEQPKVIE 85

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFL-------PEE 536
           A L         I  E  Q L ++       +  L   +       +           ++
Sbjct: 86  AELRRFTAECDRIRDETRQPLTELENAEKARVDALQQRIAELRGLAEVVDVMGNYLPSDD 145

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I  RL       L         +AG+     +A +  +     +A         L R ++
Sbjct: 146 ISARLSTAKSVALDDTWQELATEAGV---AKDATVQKLELSLAEARKRENAAAELERLRK 202

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ---------IESQEAMIE 639
           E E +  +   +    + A   +   EV  Q  +         ++++ A IE
Sbjct: 203 EQEAETQRRRDEQLKREAAEEATRQAEVKAQQERDAAAKREANLKAEAARIE 254


>gi|297667607|ref|XP_002812065.1| PREDICTED: girdin [Pongo abelii]
          Length = 1870

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 42/334 (12%), Positives = 102/334 (30%), Gaps = 30/334 (8%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
           +   +   K ++++   ++   +      +  +D         K   EK I       + 
Sbjct: 497 EKENQRLSKKVEILENEIVQEKQSLQNCQNLSKD-----LMKEKAQLEKTIETLRENSER 551

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
             K   +          +  +    +    +KD            ++  ++  + I E S
Sbjct: 552 QIKILEQENEHLNQTVSSLRQRSQISAEARVKD-----------IEKENKILHESIKETS 600

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                 +   R   ++    +       + +       +E  LL   I +  I  E+ + 
Sbjct: 601 SKLSKIEFEKRQIKKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEA 660

Query: 505 LA----DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           L     ++  +N +L+K      +   + +    E              ++ L +     
Sbjct: 661 LEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQLDEENLELRRNVESL-KCASMK 719

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE------EIEKQIAQVTAKGEAEKT 614
                     +   ++  ++ L L K     + + E      +IE Q  Q T +   +K 
Sbjct: 720 MAQLQLENKELESEKEQLKKGLELLKASFKKTERLEVSYQGLDIENQRLQKTLENSNKKI 779

Query: 615 AILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
             L S L ++ ++   ++     +E     S RL
Sbjct: 780 QQLESELQDLEMENQTLQKN---LEELKISSKRL 810



 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 72/231 (31%), Gaps = 20/231 (8%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    +     L+Q   +   +     +  K+  +  + K  +       +   +   K 
Sbjct: 809  RLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENNVKIGNLEKENKT 868

Query: 481  SLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +E  +   + I    + +E  + +     D   L  L   L S          E++  
Sbjct: 869  LSKEIGIYKESCIRLKELEKENKELVKRATIDIKTLVTLREDLVS----------EKLKT 918

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEI 598
            +       +L  +L++   +        ++     +    +  +  K+   +  +    +
Sbjct: 919  QQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDRYKLLESKLESTLKKSLEIKEEKIAAL 978

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIEGFGKMSG 646
            E ++ + T          L   L  V      + Q + +E M++    +SG
Sbjct: 979  EARLEESTNYN-----QQLRQELKTVKKNYEALKQRQDEERMVQSSPPISG 1024


>gi|295399458|ref|ZP_06809440.1| MutS2 family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978924|gb|EFG54520.1| MutS2 family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 784

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 56/170 (32%), Gaps = 29/170 (17%)

Query: 493 NHPAILQEQYQEL----ADIRYDNNELQKLWSFLF-------------SDFVEQKYFLPE 535
           ++P +    Y       A + +D   L+  +  L                 + ++     
Sbjct: 449 HYPELKAYGYNRDGVINASVEFDTETLRPTYKLLIGIPGRSNAFEISKRLGLAERIIERA 508

Query: 536 EIHQRLCERGFGELLKQLDR---QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
           ++H          ++  L++   +  +    +         +R+ ++Q      ++  L 
Sbjct: 509 KLHISAESNNVENMIASLEQSKKRAEEELKKAEEARMEAEQLRRDWEQ------KWEELH 562

Query: 593 RQKEEIEKQIAQVTAK---GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++EEI ++  +  A       +K   +I  L  +  +      +  +IE
Sbjct: 563 EKREEIIEEAKRKAADIVRSSQQKAERIIHELRRMQQEKQAEIKEHELIE 612


>gi|281352940|gb|EFB28524.1| hypothetical protein PANDA_013479 [Ailuropoda melanoleuca]
          Length = 1216

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 103/363 (28%), Gaps = 51/363 (14%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           D +      +    ++       G        S  E        +G          +L  
Sbjct: 366 DLETRKKTESQYQREMAAMEEAEGLLKRVSERSAMECSSLLRTLHGLEQVHLRRSLALQQ 425

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
            +   K   +   F   +               IK    +          L Q +     
Sbjct: 426 EEDFAKAHRQLAIFQRHELHNIF-------FTQIKSAIFQGELKAEAAKMLLQDYADIQE 478

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL------LLTLIN-- 493
           +      +++ + R+      S+R      +   +    +  +  L      L   I   
Sbjct: 479 KLEELMDFFQASKRYHL----SKRFGHREYLVQNMQSSETRVQGLLSTADTQLTLFIQKH 534

Query: 494 ------HPAILQEQYQELADIRYD-----NNELQ----KLWSFLFSDFVEQKYFLPEEIH 538
                     ++   + +    +      +N+L+    KL   L      ++  L +   
Sbjct: 535 ERAGYLDEEQMETLLERVQTEVFSIKQKLDNDLKQEKKKLHQKLI--LKRRREMLQKHKE 592

Query: 539 QRLCERGFGELLKQLDRQVRDAGLW---SATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           QR  +   GE L+  +   +  G W    A   A + D+++   QA     R   LS   
Sbjct: 593 QRKEQLSLGEALRAAEDASQYLGRWGSLLAEHSAALEDLQERLDQAALEELRALTLS-LS 651

Query: 596 EEIEKQIAQVTAKGEAEKTAI-----------LISILHEVHIQIHQIESQEAMIEGFGKM 644
           E+  +++ ++   G  ++              L     E+  +  Q+E +E   +  G  
Sbjct: 652 EKATEELRRLQNSGMTQELLKRGVPWLFLQQILEEHSRELAARAQQLEGEERDRDQEGVQ 711

Query: 645 SGR 647
           S R
Sbjct: 712 SVR 714


>gi|226294424|gb|EEH49844.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1161

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/267 (10%), Positives = 81/267 (30%), Gaps = 21/267 (7%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
           P+  +      +  S ++P E+ +  +         +D +L          +L     + 
Sbjct: 255 PMNVLSQDMARQFLSNSSPSEKYKFFLKGVQLEQLDQDYRLLEESIDQTEAKLSIHLDQI 314

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
                   +   K A     +    R+         +  +   ++        +  A ++
Sbjct: 315 KELEVARNQTRAKLALSDKNETIRARVRNLRAQMAWVQVEEQEKQRH------SCDAQIE 368

Query: 500 EQYQELADIRYDNNELQKLWS-------FLFSDFVEQK-YFLPEEIHQRLCERGFGELLK 551
           +  +++A++  +  E  +++         +     E K     +E   +  +    E +K
Sbjct: 369 QATRKIANLEAEVAEADEVFQEADREHNAILEAVREAKSELKAQEDRGKAADERLDETVK 428

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-----RQKEEIEKQIAQVT 606
           +               +A    ++    +     +R   L      R+  E+E++ A+  
Sbjct: 429 ERHELQAQQRTIRECLKAAESTIKDTQSKIDEEKQRLEDLDGGSHARRIAELEQKKAEAE 488

Query: 607 AKGEAEKTAILISILHEVHIQIHQIES 633
              +  +       L  +  ++ + E 
Sbjct: 489 EARD--RHHAHARDLDRLQDELTRAEQ 513


>gi|198415198|ref|XP_002119245.1| PREDICTED: similar to Centriolin (110 kDa centrosomal protein)
           (Centrosomal protein 1), partial [Ciona intestinalis]
          Length = 1083

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 77/280 (27%), Gaps = 41/280 (14%)

Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456
              +  +        IN IKD+  +      +     ++ +  +            +   
Sbjct: 497 EKMKIRQRLAAKIKKINEIKDEAEKME--DLLSRGRAEVQRSKLEYDRIRANLKHLDPNA 554

Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN---HPAILQEQYQELADIRYDNN 513
            +       +        +L+++    EA L   L N       +++  + L      ++
Sbjct: 555 PEFNQAKSDMKSKEQQIKELTQQIKSNEAHLDRLLKNIAIDTEAIKQLEEHLEGGTATSD 614

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIH-QRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
           +   L   L       + +L             F +LL+  +R VR              
Sbjct: 615 D--ALRQELEDIVGGLQDYLINVRRKADAQRNEFDDLLRDKERLVRRLAALEQEKSILAA 672

Query: 573 DVRQG------------------------YQQALALYKRFRLLSRQKEEIEKQIAQV--- 605
           DV                            ++A  L      L RQ E  E +I ++   
Sbjct: 673 DVDDYGQLQAQLDALNKSMSDMNKQNSALQREANELSVHEGDLQRQLEAAESRIQELHGA 732

Query: 606 ------TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                   K + EK    +  +  +  ++   E +   ++
Sbjct: 733 MQDSEHRGKEDREKLGKQMEEIARLQNKVGDREEEARAVK 772


>gi|194388604|dbj|BAG60270.1| unnamed protein product [Homo sapiens]
          Length = 476

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 6/117 (5%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QA 581
            +   +      E++ Q+L           L    R +         +  D+ + Y+ Q 
Sbjct: 288 LAQLRDAYQKQKEQLRQQLEAPPSQRDGHFLQESRRLSAQSENLMAESRQDLEEEYEPQF 347

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           L L +R    ++  +  + +I ++      E    L +   ++ +Q   +E Q A++
Sbjct: 348 LRLLERKEAGTKALQRTQAEIQEM-----KEALRPLQAEARQLRLQNRNLEDQIALV 399


>gi|123495500|ref|XP_001326757.1| PCI domain containing protein [Trichomonas vaginalis G3]
 gi|121909676|gb|EAY14534.1| PCI domain containing protein [Trichomonas vaginalis G3]
          Length = 435

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 55/146 (37%), Gaps = 6/146 (4%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP-EEIHQRLCERGFGELLKQLD 554
            ++ E  Q+ A I     + +++ + L   +V+         +   L E        +  
Sbjct: 33  DLIDEVIQDGAHIEERVGDFEQVLNHLLETYVQLANSEKFATLLDHLAEYFTKIPKARTA 92

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           + VR            +       Q+ +     + R L RQ+  +E +++++    E  K
Sbjct: 93  KLVRIIIQALRKVPGTLEIQADLCQKWITWAKDQERTLLRQR--LETELSEI--LLEQHK 148

Query: 614 TAILISILHEVHIQIHQIESQEAMIE 639
               I IL  +  ++ +++ +  +IE
Sbjct: 149 YNEAIEILQRLTAELRKVDHKSQLIE 174


>gi|109088355|ref|XP_001093658.1| PREDICTED: vimentin [Macaca mulatta]
          Length = 464

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 50/130 (38%), Gaps = 13/130 (10%)

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPE-----EIHQRLCERGFGELLKQLDRQVRDAGLW 563
                E+++L   +     ++     E     E   RL E+   E+L++ + +       
Sbjct: 148 DLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQEEMLQREEAENTLQSFR 207

Query: 564 SATTEANIVDVR-----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-IL 617
                A++  +      +  Q+ +A  K+      + +E++ QI +   + + + +   L
Sbjct: 208 QDVDNASLARLDLERKVESLQEEIAFLKKLH--EEEIQELQAQIQEQHVQIDVDVSKPDL 265

Query: 618 ISILHEVHIQ 627
            + L +V  Q
Sbjct: 266 TAALRDVRQQ 275


>gi|37676247|ref|NP_936643.1| putative exonuclease SbcC [Vibrio vulnificus YJ016]
 gi|37200788|dbj|BAC96613.1| putative exonuclease SbcC [Vibrio vulnificus YJ016]
          Length = 1021

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 65/225 (28%), Gaps = 19/225 (8%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
                + +L ++         R  +     + +   +    + +  +     +   RE+ 
Sbjct: 376 QFEQEIIRLEEEVQKFAHQLKRVQEHKVVMQQELTSASDAFEKAKQQTAEIPRLEARESE 435

Query: 487 LLLTLI---NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL-------PEE 536
           L   +     +  + +     LA         Q+      +                   
Sbjct: 436 LKRQISDYEQYQNLNKVLQNLLAQTEQKEQLHQQAKQHWLNAQQSADSIELSWHNGQAAI 495

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA--------LYKRF 588
           + QRL +     +   L+   +   +     +  +   R+  + ALA        L    
Sbjct: 496 LAQRLHQGEACPVCGSLEHPQKAQFVGEPVHKQQVEQAREQEKTALAQLNQHHQELELHL 555

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
             + +Q++ IE++  Q+           L +   E+   + Q++ 
Sbjct: 556 AQVKQQQKAIEEKATQLGELL-KSPLETLQAQALEIRHTLKQLQG 599


>gi|26337435|dbj|BAC32403.1| unnamed protein product [Mus musculus]
          Length = 712

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 98/288 (34%), Gaps = 39/288 (13%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD---- 430
           + E     +     E +        E  +        +  ++DQ     Y   +      
Sbjct: 146 MSEKQIKQENNHLMEMKMNLEKQNTELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 205

Query: 431 ----------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
                     +L +  Q+   +                 K  S++L +S   +    L K
Sbjct: 206 ELKEENEEKTKLCKELQQKKQDLQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 265

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 266 EKIMKELEIKEMMARHKQELTEKDTTIASLE---ETNRTLTSDVANLANE-----KEELN 317

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
            +L +    E L +L  +   A    A  E  +++ R    QA+     +  R   + R 
Sbjct: 318 NKLKDS--QEQLSKLKDEEMSAAAIKAQFEKQLLNERTLKTQAVNKLAEIMNRKEPVKRG 375

Query: 594 -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 376 SDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 420


>gi|326933532|ref|XP_003212856.1| PREDICTED: cingulin-like [Meleagris gallopavo]
          Length = 1120

 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 7/219 (3%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + +    ++  +      +      +K+ +         +     + K +LS      E 
Sbjct: 775 RELEQMTEESNRSLAALKAQLEECKEKSRKEITDSQKQAKDRGVEVEKMQLSVGRLQDEV 834

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             L   +       E+   L +       L+ L   + +    Q   L +        + 
Sbjct: 835 TRLKQALQDSQ--TERDGALLERDVTLQRLRGLEEEVDAKRRSQDDRLRQLKVLEEKSKR 892

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQ 601
             E L++    V         +   I  +R    Q  +  +        L RQ +E++ +
Sbjct: 893 LEEELEEERSTVELLTERVNRSRDQIDQLRAELLQERSSRQDLECDKVSLERQNKELKSR 952

Query: 602 IAQVTAKGEA-EKTAILISILHEVHIQIHQIESQEAMIE 639
           +A      +A    + L + L E+  ++   E ++++++
Sbjct: 953 LASSEGMQKAGGSISQLEARLEELQDRLQAEEREKSILQ 991


>gi|326915949|ref|XP_003204274.1| PREDICTED: uncharacterized protein KIAA0408-like [Meleagris
           gallopavo]
          Length = 1143

 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 83/261 (31%), Gaps = 26/261 (9%)

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             +   +    ++  E        +  +            +D +      Q +++    +
Sbjct: 676 ETAKQALQNELEKMKEQSLKRRGSKDLQKSEKKSQQTPTEEDNEDLKCQLQFVKEEAALM 735

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLI 492
            +K         R+  +  ++R   G     + S L KG+    P+ REA L   L  + 
Sbjct: 736 RKKMAKIDKEKDRFEHELQKYRSFYGD----LDSPLPKGEAGGPPTTREAELKLRLRLVE 791

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
               IL  +  EL        E + L + L     +        +          E L +
Sbjct: 792 EEANILGRKIVELEV------ENRGLKAELDDLRGDDFSGATNPLLG-----EQSESLSE 840

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           L + ++     +     N+ D+ +  ++  A   +++         +    + +   +  
Sbjct: 841 LRQHLQLVEDETELLRRNVADLEEQNKRITAELNKYKY--------KSGAHESSRHHDNA 892

Query: 613 KTAILISILHEVHIQIHQIES 633
           KT  L   L    +QI+++  
Sbjct: 893 KTEALQEELKAARMQINELSG 913


>gi|326914704|ref|XP_003203663.1| PREDICTED: girdin-like isoform 1 [Meleagris gallopavo]
          Length = 1884

 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 88/254 (34%), Gaps = 15/254 (5%)

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKD-QKLRYYYSQAIRDRLQQLFQKYITEHSG 445
            +ETEN +    +   E    L      IK  +K   +Y +   +R ++L  +       
Sbjct: 582 MKETENENKILHESIKEASSKLNKLEFEIKQVKKEMEHYKEK-AERAEELENELHRLEKE 640

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
                KK A         + L +    +       + +    L +L N P  L+   +E 
Sbjct: 641 NEVLQKKIANLNITCEKIEALEK----ENSDLDMENRKLKKTLDSLKNLPFQLESLEKEN 696

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
           + +  +N EL++            K    +     L  +      +QL + +        
Sbjct: 697 SQLDEENLELRR-------RIESSKCTSIKMAQLELENKELESEKEQLKKSLELMKASFK 749

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
            +E   V  +    +   L K     +++ +++E ++  + ++   +     +  L    
Sbjct: 750 KSERLEVSYQGLDTENQRLQKALENSNKKIQQLESELQDLESEN--QTLQKNLEELVISS 807

Query: 626 IQIHQIESQEAMIE 639
            ++ Q+E +  ++E
Sbjct: 808 KRLEQLEKENKLLE 821


>gi|324993382|gb|EGC25302.1| DNA repair protein RecN [Streptococcus sanguinis SK405]
 gi|324995305|gb|EGC27217.1| DNA repair protein RecN [Streptococcus sanguinis SK678]
 gi|325690174|gb|EGD32178.1| DNA repair protein RecN [Streptococcus sanguinis SK115]
          Length = 552

 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 84/243 (34%), Gaps = 38/243 (15%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ----KGPSQRLMQSSLVKGKLSKKPSLR 483
           ++ R Q+ F +Y +         K    H+ +    +     +  ++L  G+ +     R
Sbjct: 157 LKGRYQETFDRYRSLRKQVLTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQER 216

Query: 484 EAAL-----------LLTLINHPAI-----LQEQYQELADIRYDNNELQKLWSFLFS--D 525
           +  L             T++++        ++    +L  I   +   ++L   L     
Sbjct: 217 DRLLNHKLIADTLTNAYTMLDNEDFSSLTNVRSAMNDLESIEDYDPAYKELSGSLSETYY 276

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +E      E+I   L   G   L  Q++ ++      +      + DV   + Q    Y
Sbjct: 277 VLEDVSKRLEDILDGLDFDGDRLL--QVESRLDLINSITRKYGGQVDDVLDYFAQISKEY 334

Query: 586 --------------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                         +  + L R+  E+ ++++Q      A+  A +   L +++++  + 
Sbjct: 335 SLLTGSNLSSEDMDRELKALERELVELAQELSQARHGLAAQLEAEIKQELQDLYMEKARF 394

Query: 632 ESQ 634
           + Q
Sbjct: 395 KVQ 397


>gi|322697547|gb|EFY89326.1| spindle-pole body protein (Pcp1), putative [Metarhizium acridum
           CQMa 102]
          Length = 1300

 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 37/354 (10%), Positives = 102/354 (28%), Gaps = 17/354 (4%)

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           L +       +         Q++ L + + R     D          +         I  
Sbjct: 237 LHRYKKHVTAAERDLEAYRQQMQELQEKARRKQ--NDEGQRLELEQLRKALEEKKSDIDA 294

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
            +         +D    +R   +     L  +   + +   + +      +  +++    
Sbjct: 295 LQQQVDQSHNDKDQLEKLRDNIEDLEADLREKDRLITERDDELDDLRDRLDAAEDKQREA 354

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
               + +   ++Q      ++     L+   ++   +   +     +    +D+      
Sbjct: 355 QRRLSELEGAENQNEELEEARETIQDLELTIRRLEEQVEDFKEKVDQAISQKDRAESDLE 414

Query: 466 LMQSSLVKGKLSKK--PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
            +Q  +    +  K      E  +           +E      ++   N E ++L + + 
Sbjct: 415 ELQEEMANKSVVTKGLSRQVEEKVSRLQEELDKSGKEYADLEKELAGANEENEQLRAEVV 474

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
               EQ+        Q        EL  +L     +  L     E   V+         A
Sbjct: 475 ELRNEQQEIRRG---QHDNSTKVRELEAELLAVADEKDLLQVRHETLRVESE-------A 524

Query: 584 LYKRFRLLSRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           L +  + L R+ EE++K +    +   + E +        L  ++  +  ++++
Sbjct: 525 LQRNVQQLEREVEELQKNVSDEREYAVEIEKDLRQQYQDELERLNDAVSDLQAE 578


>gi|312385521|gb|EFR29999.1| hypothetical protein AND_00676 [Anopheles darlingi]
          Length = 486

 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 89/291 (30%), Gaps = 15/291 (5%)

Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414
            G D  S  R   +    KL  E     +     + E     T  E    ++     +  
Sbjct: 53  DGCDMSSMSREQLEQFALKLRNEMEREREERNFFQLERDKLRTYWEITRKQLEEAKAVIR 112

Query: 415 IKDQKLRYYYSQAIRDRLQQLF---QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
            K++ L    ++ +   ++ L    Q +I E         K A+        + L     
Sbjct: 113 GKERDLADQDTKNVMQEMKHLQYEHQSHIGELRAEMMTQLKMAQEDHTLQERELLNDKRD 172

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQ----EQYQELADIRYDNNELQKLWSFLFSDFV 527
           +K  L +K    E  +    + H  +L     +  +E+  +        KL+    + + 
Sbjct: 173 LKRLLREKEENAELEIQQLKLKHSELLSVERAKFQEEIEAMT-------KLFEQRLASYK 225

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           E+     E     + ER  G++ + ++   +      +   A   +       ++     
Sbjct: 226 EEAEVRHEMELSEVEERKNGQIAELINTNEQAYREMKSYYNAITQNNL-ALINSMKEEME 284

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
              L   K+           K   E      + L E+  ++   +  +A +
Sbjct: 285 EMRLQSDKDLKSFTEVMAENKRLTEPLKSAQAELLELRKKLQYYDRDKATL 335


>gi|301784266|ref|XP_002927548.1| PREDICTED: microtubule-actin cross-linking factor 1, isoforms
            1/2/3/5-like [Ailuropoda melanoleuca]
          Length = 5387

 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 15/173 (8%)

Query: 480  PSLREAALLLTLINHPAILQEQY-------QELADIRYDNNELQKLWSFLFSDFVEQKYF 532
             +  E  L  T+ + P +LQ+Q        +ELA+ +    +LQK+   L     E    
Sbjct: 1909 EANVEKLLSDTIASDPGVLQQQLATTKQLQEELAEHQVAVEKLQKVAHDLMEIEGE-PAP 1967

Query: 533  LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
              + +     +     +L +           SA  +  I   +   +   +L +  R + 
Sbjct: 1968 DRKHV-----QETTDSILSRFQSLSSSLAERSALLQKAIARSQSVQESLESLLQSIREVE 2022

Query: 593  RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
            +  EE  +Q+A ++     E  A  + +  ++  Q   +E+   M+  F + +
Sbjct: 2023 QNLEE--EQVASLSLGVIQEALATNMKLKQDIARQKSSLEATREMVTRFMETA 2073


>gi|291412341|ref|XP_002722441.1| PREDICTED: Rho-associated coiled-coil containing protein kinase
            2-like [Oryctolagus cuniculus]
          Length = 1461

 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 78/211 (36%), Gaps = 21/211 (9%)

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSKKPSLREAALLLTLIN 493
             Q+   E                 K  S++L +S   +    L K+  ++E  +   +  
Sbjct: 899  LQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEKEKIMKELEIKEMMAR 958

Query: 494  HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            H   L E+   +A +       + L   + +   E      EE++ +L +    E L +L
Sbjct: 959  HKQELTEKDATIASLE---ETNRTLTGDVANLASE-----KEELNNKLKDA--QEQLSRL 1008

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR----QKEEIEKQIAQV 605
              +   A    A  E  ++  R    QA+     +  R   + R         EK+  ++
Sbjct: 1009 KDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRGSDTDMRRKEKENRKL 1068

Query: 606  TAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              + ++E+   L   + +   +++++++Q A
Sbjct: 1069 HMELKSER-EKLTQQMIKYQKELNEMQAQIA 1098


>gi|195439092|ref|XP_002067465.1| GK16173 [Drosophila willistoni]
 gi|194163550|gb|EDW78451.1| GK16173 [Drosophila willistoni]
          Length = 1126

 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 70/245 (28%), Gaps = 24/245 (9%)

Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
            E   ++T +E       L +    + D +      + + +    LFQ    +       
Sbjct: 423 MEETHYSTNEELQATLQELADLQTQLTDTQTEN---ERLSEEKDVLFQSLCRQTEKLNES 479

Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
             +          + + +     K       S RE  LL        +++   +E   + 
Sbjct: 480 RTQIT--------TLQELLLRDTKQAAEVTTSEREKKLL-------DLIKTSQEEREVVL 524

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               EL    S L S           ++ Q+           QLD    +     +    
Sbjct: 525 LKQEELNSELSELRSVC------DAAQLEQQRQRERIALQDSQLDASNAERKQGESQLSQ 578

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
              ++ Q   +   L         + EE+E  +++      ++           +  ++ 
Sbjct: 579 AKEEISQRGIEINRLTTLLENARSKIEELEADLSRGDKTDLSDVLDAARREKDTLEERVA 638

Query: 630 QIESQ 634
           +++ Q
Sbjct: 639 ELQDQ 643


>gi|195327155|ref|XP_002030287.1| GM24647 [Drosophila sechellia]
 gi|194119230|gb|EDW41273.1| GM24647 [Drosophila sechellia]
          Length = 1854

 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 67/215 (31%), Gaps = 9/215 (4%)

Query: 421  RYYYSQAIRDRLQQLFQKYITE-HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    + ++  L    +  + E         ++     +       + +    + +L +K
Sbjct: 931  RESRIEELKQELAAAKRDVLKEHLQWEKAEQERMKCKSEIIELLANVHRLEQQETELRQK 990

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                ++      +     ++E  +E    R  N+    L   L         F   +   
Sbjct: 991  LRQIQSRFDGLTLEQKNTIRELQEEREKSRKANDSCLVLQKELKQLTDN---FQRLKYAC 1047

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             + +    E+   L  +        +  +     VR+   Q   L K+   +     E E
Sbjct: 1048 SITDSQLTEVETMLKSEQDRNKSQKSQLDTLHEKVRERNDQLTDLRKQLTAV-----EAE 1102

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            K++A+  A+  A +   L   L E   ++   + Q
Sbjct: 1103 KRLAEQRAQVLASEIEELRLNLKEQQKKLVAQQDQ 1137


>gi|170029180|ref|XP_001842471.1| myosin-2 heavy chain [Culex quinquefasciatus]
 gi|167881574|gb|EDS44957.1| myosin-2 heavy chain [Culex quinquefasciatus]
          Length = 1946

 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 73/217 (33%), Gaps = 6/217 (2%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             ++ +L+    +         +   +  ++  +     + +Q    + + ++  +  +  
Sbjct: 1620 RMKKKLEADINELEIALDHANKANAEAQKNIKRYQQELQDVQGITQEEQRARDEAREQLG 1679

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ----RLC 542
            +     +  A+  E  +    + + +   ++    L     +      E        R  
Sbjct: 1680 ISKRRAH--ALQNELEESRVLLEHSDRSRRQAEQELSDAHEQLSEVSAESASNAAAKRKR 1737

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            +     L   LD  + +A       +  ++D  +   +  A     +  ++ ++ +E QI
Sbjct: 1738 DSELHTLHSDLDELLNEAKNSEEKAKKAMIDAARLADELRAEQDHAQTQAKLRKALEVQI 1797

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              + A+ +  +++ L         Q  +I   EA ++
Sbjct: 1798 IALQARLDDAESSTLKGGKKATQKQEDRIRELEAALD 1834



 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 94/278 (33%), Gaps = 31/278 (11%)

Query: 391  ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
            +       ++ A+L     +  N ++D + R    +  R++L Q  +K   E SG  +  
Sbjct: 902  KGALQEYQEKAAKLTAQKNDLENQLRDTQERLAQEEDARNQLFQTKKKLEQEISGQKKDA 961

Query: 451  -------KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
                   +K    +  K  + R +   +           +E  +         + Q   +
Sbjct: 962  EDLELQIQKIEHDKASKDHTIRNLNDEIAHQDELINKLNKEKKM------QGEVNQRNGE 1015

Query: 504  ELADIRYDNNELQKLWSFLFSDFVE-----------QKYFLPEEIHQRLCERGFGELLKQ 552
            EL       N L K+ + L     E           +      +       +   E +  
Sbjct: 1016 ELQAAEDKVNHLNKVKAKLEQTLDELEESLDREKRLRGDVDKNKRKVDGELKLTREAVLD 1075

Query: 553  LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
            L+R  ++        +  I  +    +    L  +   L +Q +E++ +I ++  + E+E
Sbjct: 1076 LERNRKELEQTILRKDKEISALSANVETEQNLVGK---LQKQIKELQGRIDELQDEVESE 1132

Query: 613  KTAILISILH--EVHIQIHQIESQEAMIEGFGKMSGRL 648
            + A   +     ++  ++   +  E + E  G  S ++
Sbjct: 1133 RQARAKAEKQRADLARELE--DFGERLEEAGGATSAQI 1168


>gi|149426200|ref|XP_001516773.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 630

 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             +  +++ +++          L RQ+ E E++  +  A G  ++   +         Q+
Sbjct: 288 ERMERIKEEFEREQLRRAEENRLQRQRSEAERRRQEAEAAGREQQERAVQEQALRQQDQL 347

Query: 629 HQ--------IESQEAM 637
            Q         + +EA 
Sbjct: 348 RQKLKEAQRKRQQEEAA 364


>gi|56789964|gb|AAW30001.1| structure protein NSP5b3a [Homo sapiens]
          Length = 790

 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 89/280 (31%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   +    E+    
Sbjct: 496 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKMENGSLK 555

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   +    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 556 SHLQGEKQKATEASAVEQTAES--CEVQEMLKVARAEKDLLE--LSCNELRQELLKANGE 611

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 612 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 671

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + E    
Sbjct: 672 VEQHRAVKLHNNQLISELESSVIK----------LEEQKSDLERQLKTLTKQMKEETEEW 721

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 722 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 761


>gi|3980058|emb|CAA77782.1| p190 myosin heavy chain [Gallus gallus]
          Length = 1830

 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/279 (10%), Positives = 87/279 (31%), Gaps = 29/279 (10%)

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
                    D+   R +E  + N  +    L+  +      +   +      +   D+ + 
Sbjct: 960  TETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019

Query: 435  LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
              ++ ++E        K      +++   Q    +  ++ KL ++    E  L    + +
Sbjct: 1020 ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079

Query: 495  PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
              +L E     + +    ++L+   + + S                  E  F   + + +
Sbjct: 1080 QNLLNEF----SRLEERYDDLKDEMNLMVSIPKPGHKRTDSTHSSNESEYTFSSEITEAE 1135

Query: 555  RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ---------- 604
                      +  +A +          L L KR   L ++K+ ++ ++ +          
Sbjct: 1136 DLPLRMEQEPSEKKAPLDMSL-----FLKLQKRVTELEQEKQSLQDELDRKEEQALRAKA 1190

Query: 605  ----------VTAKGEAEKTAILISILHEVHIQIHQIES 633
                         + E+ K   L S   ++  ++++++ 
Sbjct: 1191 KEEERPPIRGAELEYESLKRQELESENKKLKNELNELQK 1229


>gi|118365437|ref|XP_001015939.1| Viral A-type inclusion protein repeat containing protein
           [Tetrahymena thermophila]
 gi|89297706|gb|EAR95694.1| Viral A-type inclusion protein repeat containing protein
           [Tetrahymena thermophila SB210]
          Length = 1379

 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/264 (9%), Positives = 78/264 (29%), Gaps = 12/264 (4%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
              +         ++++       ++    +  ++    +      +      I+++L  
Sbjct: 324 NKNNQIQELNEQHQKSQTEIQKLNEQITSNQQRIEELQKNENILVEKDKNINEIKEQLSA 383

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
           L Q+         +   K       +    +       K K   +     +  +  ++  
Sbjct: 384 LNQQIEGFKDIQNKLDTKTEEFEKLEKDFNQQKSELEEKIKSKDEEIENLSKKIQDIVEQ 443

Query: 495 PAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
               Q+Q  +L ++++  N E ++L   +     +      +       E+   +L  +L
Sbjct: 444 QQEKQKQLDDLNSNLQNSNKENEQLKQEINDFKNKINNSNQD------QEQQSNQLKAEL 497

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
            +            E    +++   QQ      +    S++ E ++ Q+         EK
Sbjct: 498 KQTQEQLNDSQQKFEQADKELKDLKQQIEDEKVKLNDKSQESENLKDQLKSAN-----EK 552

Query: 614 TAILISILHEVHIQIHQIESQEAM 637
                  L ++      ++    +
Sbjct: 553 LNESQQKLEQIQKNFDDLKQNNDL 576


>gi|21748560|dbj|BAC03417.1| FLJ00354 protein [Homo sapiens]
          Length = 1041

 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 87/270 (32%), Gaps = 23/270 (8%)

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL------RYYYSQAIRDRLQQL 435
            D   +    + ++  P +++E  + ++     I  + L      +    + +   L++ 
Sbjct: 689 HDQRLEGTVRDPAWQKPQQKSEGALEVQVWEGPIPGESLASGVAEQEALREEVAQ-LRRK 747

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +    E     R  +       +        + +  +     +    E A         
Sbjct: 748 AEALGDELEAQARKLEAQNTEAARLSKELAQARRAEAEAHREAEAQAWEQA--------- 798

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +       ++   + E + L   L +   E++ +  E    R       E ++ L+ 
Sbjct: 799 RLREAVEAAGQELESASQEREALVEALAAAGRERRQWEREGSRLRAQSEAAEERMQVLES 858

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQAL----ALYKRFRLLSRQKEEIEKQIAQV--TAKG 609
           + R     +         ++   ++A+     L  R   L R+ E+   +  +     + 
Sbjct: 859 EGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEHLQRELEQAALERQEFLREKES 918

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + ++   L   L E  +Q      +EA++E
Sbjct: 919 QHQRYQGLEQRL-EAELQAAATSKEEALME 947


>gi|327308588|ref|XP_003238985.1| hypothetical protein TERG_00971 [Trichophyton rubrum CBS 118892]
 gi|326459241|gb|EGD84694.1| hypothetical protein TERG_00971 [Trichophyton rubrum CBS 118892]
          Length = 1259

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 39/319 (12%), Positives = 94/319 (29%), Gaps = 35/319 (10%)

Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT-------- 397
            R  +  L    D  +      +   + L  E       L   + E+ +           
Sbjct: 439 VRQQYATLQEKLDDKAQFEHRLQEQIKDLRQEHSSTERELIFLQKEHANCQGNIEDKMHS 498

Query: 398 ----PDERAELEIHLKNCINHIKDQKLRYYYSQAIR--------DRLQQLFQKYITEHSG 445
                +   +L+  L +  + ++ +  +  + +AI          RLQ L  +   +   
Sbjct: 499 ENRLQERIEDLKQELSSAKSDLQHELEQARHEKAIAIRDQKSTLARLQALEDELQQKGET 558

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
                 ++    ++    Q  +  +       ++ +  E     +L     +      E+
Sbjct: 559 KTLLQTRHDALTNESKALQGDLDRAKRAIAQLEEDAAAERQ--ESLNTLEEMRHRHKDEI 616

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
             +      L++                 E I + L       L +    +     L   
Sbjct: 617 DRLNLQITTLRREVDK-KDSLFNSDLDKWENIKRSLELERDRALQQAEAHKRTVDSLQQM 675

Query: 566 TT-----EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
            T     E  + D+    +Q     ++  LL+RQ +E+   I+      E +++      
Sbjct: 676 ETTKSGREKRLQDIIDSEKQ--RRLRQEELLTRQIKELNDDISSRREASETQRS-----E 728

Query: 621 LHEVHIQIHQIESQEAMIE 639
           L  +  Q+     +E  ++
Sbjct: 729 LLSLKEQLRVSRREEQTLK 747


>gi|323462178|ref|NP_084276.2| centriolin isoform 2 [Mus musculus]
          Length = 1780

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 59/150 (39%), Gaps = 11/150 (7%)

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           TL+     +Q++ +EL  I  D   ++K  + L S   EQ                  + 
Sbjct: 96  TLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNAS----------LQQA 145

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
              L     +        +A    ++Q  ++ L   +  + + + + E E++  +  A G
Sbjct: 146 QGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLR-DALG 204

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +A+ +       +E+  Q+ Q++   ++++
Sbjct: 205 KAQSSEEKQQENNELRTQLKQLQDDNSLLK 234


>gi|312109983|ref|YP_003988299.1| MutS2 family protein [Geobacillus sp. Y4.1MC1]
 gi|311215084|gb|ADP73688.1| MutS2 family protein [Geobacillus sp. Y4.1MC1]
          Length = 784

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 56/170 (32%), Gaps = 29/170 (17%)

Query: 493 NHPAILQEQYQEL----ADIRYDNNELQKLWSFLF-------------SDFVEQKYFLPE 535
           ++P +    Y       A + +D   L+  +  L                 + ++     
Sbjct: 449 HYPELKAYGYNRDGVINASVEFDTETLRPTYKLLIGIPGRSNAFEISKRLGLAERIIERA 508

Query: 536 EIHQRLCERGFGELLKQLDR---QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
           ++H          ++  L++   +  +    +         +R+ ++Q      ++  L 
Sbjct: 509 KLHISAESNNVENMIASLEQSKKRAEEELKKAEEARMEAEQLRRDWEQ------KWEELH 562

Query: 593 RQKEEIEKQIAQVTAK---GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++EEI ++  +  A       +K   +I  L  +  +      +  +IE
Sbjct: 563 EKREEIIEEAKRKAADIVRSSQQKAERIIHELRRMQQEKQAEIKEHELIE 612


>gi|308477855|ref|XP_003101140.1| CRE-MYO-2 protein [Caenorhabditis remanei]
 gi|308264068|gb|EFP08021.1| CRE-MYO-2 protein [Caenorhabditis remanei]
          Length = 1960

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/283 (8%), Positives = 81/283 (28%), Gaps = 5/283 (1%)

Query: 362  FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                   +     I + +   +  ++   +         +A L+   K      + +K  
Sbjct: 1574 LRCQIEVSQIRAEIEKRIAEKEEEFENHRKVHQQTIDSIQATLDSETKAKSELFRVKKKL 1633

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                  +   L    +           +                 ++         +K  
Sbjct: 1634 EADINELEIALDHANKANEDAQKNIRYFNYLTITPFSSFRRYLDQIRELQQTVDDEQKRR 1693

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF-LFSDFVEQKYFLPEEIHQR 540
                  LL      A+ +++ +EL          +++    +            + +   
Sbjct: 1694 EEFREHLLAAERKLAVAKQEQEELIVKLEAIERARRVVESSVKEHQEHNNELNSQNVALA 1753

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTE----ANIVDVRQGYQQALALYKRFRLLSRQKE 596
              +      +  L+  + +A    + +E        D  +  +      ++ + L R K+
Sbjct: 1754 AAKSQLDNEIALLNSDIAEAHAELSASEDRGRRAASDAAKLAEDLRHEQEQSQQLERFKK 1813

Query: 597  EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++E  +  +  + +A + A++      +     ++++ ++ +E
Sbjct: 1814 QLESAVKDLQERADAAEAAVMKGGAKAIQKAEQRLKAFQSDLE 1856


>gi|297696737|ref|XP_002825541.1| PREDICTED: cingulin-like protein 1-like [Pongo abelii]
          Length = 541

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 95/290 (32%), Gaps = 10/290 (3%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            + +  Y +    +L      L +   + E    +     +   L           +D+ 
Sbjct: 211 QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEA 270

Query: 420 L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           L  R    Q ++D   +L  K   +        +   +    +   +    +S +  +  
Sbjct: 271 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERI 330

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLP 534
            +   +   +   L+   A  Q+   +   +   N +L+     L   +    E      
Sbjct: 331 SRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQM 390

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLL 591
           E     L +R   E   + + Q+ +  L     E  +    +      Q   L  R + +
Sbjct: 391 EARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAM 450

Query: 592 SRQKEEIEKQIAQVTAKGEA-EKTAILISILHE-VHIQIHQIESQEAMIE 639
            RQ EE E++I ++ +  +  ++       ++E +  Q++ ++    + +
Sbjct: 451 KRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLRLKK 500


>gi|297487334|ref|XP_002696164.1| PREDICTED: 5-azacytidine induced 1 isoform 1 [Bos taurus]
 gi|296476173|gb|DAA18288.1| 5-azacytidine induced 1 isoform 1 [Bos taurus]
          Length = 1089

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 85/294 (28%), Gaps = 25/294 (8%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           +    +     ++  K+  E  S      R +        I  I  + L     + I   
Sbjct: 658 KDREAQLQEQHELEIKKLKELMSATEKVRREKWINEKTRKIKEITVKGLEPEIQKLIAKH 717

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            Q++ +      +   +  ++ A+H  ++    R       +    ++    +      L
Sbjct: 718 KQEVKKLKGLHATELLQAEERAAQHYGRQAEELREHLEREKEALGRQEWERAQQRFEQHL 777

Query: 492 IN------------HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-- 537
                         +  + +E+ +          EL +L   L          L  E   
Sbjct: 778 EQEQRALQQQRRRLYNEVAEEKERLGQQAARQRAELDELRRQLEESSSAGGRALRAEFEK 837

Query: 538 ----HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
                +R  +     L  QL+ + +     SA  E   +  R+   +      R + +  
Sbjct: 838 GKEEQERRHQMELKALKDQLEVERQMWEANSAKKEEAWLLNRERELKEEIRKGRDKEIEL 897

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILIS-------ILHEVHIQIHQIESQEAMIEG 640
               +E  + Q   + E      +          L E+     +++ + A ++G
Sbjct: 898 VIHRLEADMTQAREESERAAENRVKRLRDKYEAELSELEQSERKLQERCAELKG 951


>gi|224373403|ref|YP_002607775.1| peptide chain release factor 2 [Nautilia profundicola AmH]
 gi|254790918|sp|B9L5Y7|RF2_NAUPA RecName: Full=Peptide chain release factor 2; Short=RF-2
 gi|223589806|gb|ACM93542.1| peptide chain release factor 2 [Nautilia profundicola AmH]
          Length = 367

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/114 (11%), Positives = 38/114 (33%), Gaps = 6/114 (5%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           +S L  +   +     E I   L        LK+++        W+         V++  
Sbjct: 6   YSELIKELENK----IENIESILKPEKLEARLKEIEELENSPDFWNDP--KTSAKVQKEK 59

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
              L   ++++      ++ +      + + + E    + + + ++   I  +E
Sbjct: 60  NAILRKLEKYKKAKTALQDNKDMFELASMEEDEETLNEVFNDVQDLKKIIRDLE 113


>gi|222100576|ref|YP_002535144.1| hypothetical protein CTN_1602 [Thermotoga neapolitana DSM 4359]
 gi|221572966|gb|ACM23778.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359]
          Length = 468

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 72/238 (30%), Gaps = 24/238 (10%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-----RDQKGPSQRLMQSSLVK 473
             R  Y   I  RL+++ +          +      +      +      +    S    
Sbjct: 205 ITRQKYLHDIEQRLKKIEEGVADIKEFLEKERDTGIQGNLLYLKQVYEALKNGDLSEYDI 264

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL------WSFLFSDFV 527
              + +    E      ++++   ++  +++L +        + L      +  + + F 
Sbjct: 265 NSFNSQLESIERQCQQAVLHYQIDMENCFKKLEEFEIGAWIGKGLKKQGEEFRKVLNSFF 324

Query: 528 EQKYFLPEEIHQRLCERGFGELL-----------KQLDRQVRDAGLWSATTEANIVDVRQ 576
               +L     +RL        L             L   +R     +   E  I     
Sbjct: 325 HYSKYLLLVFQERLVTIYLKTFLPVGKSILRVRINDLKESLRFLE-RTRKIEEFIEQSLD 383

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             ++  AL+   +  ++ K  + + + +   + E E    L   L     +++Q+E++
Sbjct: 384 RIEEFWALFTSEKTENQIKRSLRQDVRRNLRELE-EMRERLYESLANFEERLNQLEAE 440


>gi|195579654|ref|XP_002079676.1| GD24081 [Drosophila simulans]
 gi|194191685|gb|EDX05261.1| GD24081 [Drosophila simulans]
          Length = 749

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 73/261 (27%), Gaps = 22/261 (8%)

Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
           D   + + E       + +  L+    +     K +       + +   + +L       
Sbjct: 359 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 418

Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501
           +       K   R++ Q       L +    +    ++  + E           A+  E 
Sbjct: 419 NKANAEAQKNIKRYQQQLIDIQTALDEEQRARDDAREQLGISER-------RANALQNEL 471

Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFL-----PEEIHQRLCER------GFGELL 550
            +    +   +   ++    L     +               ++L            ELL
Sbjct: 472 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 531

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            +       A            ++R     A    K  + L +Q +E++ ++ +  A   
Sbjct: 532 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 591

Query: 608 KGEAEKTAILISILHEVHIQI 628
           KG  +    L   + E+  ++
Sbjct: 592 KGGKKAIQKLEQRVRELENEL 612


>gi|193216773|ref|YP_002000015.1| massive surface protein MspC [Mycoplasma arthritidis 158L3-1]
 gi|193002096|gb|ACF07311.1| massive surface protein MspC [Mycoplasma arthritidis 158L3-1]
          Length = 2719

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 37/327 (11%), Positives = 113/327 (34%), Gaps = 15/327 (4%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           D +   L  +     +    L  G   N       +     ++ Y +   ++ +      
Sbjct: 446 DENTLPLAISQLEDAIAKAELALGKHENLKEKELIKSIYDALKAYKEKEADEALANVKKR 505

Query: 382 VDMLWKRETE-NRSFNTPDERAELEIHLKNCINHIKD-QKLRYYYSQ--AIRDRLQQLFQ 437
            +   + + + +   +          +     N I D   L+    Q   ++ +++ + +
Sbjct: 506 FEAKKQAKAKIDADLDAKQNEFNAIKNTIESSNTINDIPTLQNAIKQLEELKPKVKAIEE 565

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
               +++ Y    +K  +  ++        ++ L K +  K+   +E  L+ +L      
Sbjct: 566 S--AKNASYPEGEQKAKKLLEEISKLDLETKAKLEKLQEEKETQEQEKKLIESLREKITK 623

Query: 498 LQEQYQELA-----DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           + +  + L       +     +  +L   L     E++    +++ + + +      L+ 
Sbjct: 624 ITKNLETLDSRGKSQLSEATPKQTELAKTLKEL--EEQLKNAQDVQKEVQDAHKENALET 681

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
              ++ +A   + TT+ ++        + +    R      + EE++K+I         E
Sbjct: 682 ELEKLEEAKNKATTTKQSLETKISDSNKNIKE--RLDNAKSELEELKKKINDAYNDRNLE 739

Query: 613 KTAILISILHEVHIQIHQIESQEAMIE 639
           +    ++ L E+  ++  +E+    +E
Sbjct: 740 ELTKELNKLEELKEKVESLETLATAVE 766


>gi|189202412|ref|XP_001937542.1| ANTH domain containing protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187984641|gb|EDU50129.1| ANTH domain containing protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 1050

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 89/249 (35%), Gaps = 33/249 (13%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           ++Q +R  Y Q  + RL +L ++ +   + Y R      ++  +    +  +       +
Sbjct: 363 QEQLMREQYQQQTQGRLAELERENLNARAQYERDQLMLQQYDQRMKALEGEINQMNQNFQ 422

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADI--RYDNNELQKLWS----FLFSDFVEQ 529
                   +   L   +N     + +Y+ LA +  +  +  LQ L       L ++  ++
Sbjct: 423 QQMGSRDDQIRALQEQLN---TWRSKYESLAKLYSQLRHEHLQLLQKFKAVQLKANSAQE 479

Query: 530 KYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----- 582
                +++ + L  +     +++++ DR + D    +      I  +++  + AL     
Sbjct: 480 AIDSRDKLQRELKTKNIELADMIRERDRALMDKDRHTGGHREEIEKLKRELRSALDRADN 539

Query: 583 -------ALYKRFRLLSRQKEEIEKQIAQVTA----------KGEAEKTAILISILHEVH 625
                   L       +R+  ++E+ +   +           +G+++    L     E+ 
Sbjct: 540 AERGKGSELSALLSRHNREIADLEEALRNKSRALEDFQMKYREGDSDLERQLRDKEEELE 599

Query: 626 IQIHQIESQ 634
           I    ++  
Sbjct: 600 IFRAGMDQT 608


>gi|167390555|ref|XP_001739402.1| myosin-2 heavy chain, non muscle [Entamoeba dispar SAW760]
 gi|165896924|gb|EDR24218.1| myosin-2 heavy chain, non muscle, putative [Entamoeba dispar SAW760]
          Length = 2151

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 90/286 (31%), Gaps = 24/286 (8%)

Query: 354  SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            +   D +   R   +   +KL  E     D L     E  S  T  ++++ ++   N   
Sbjct: 1453 NENLDIEKKDRMNKEKQVKKLEGELKETKDKLSAAIAEKDSIFTAKKQSDADLEELNKTV 1512

Query: 414  HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
               D+ +    +Q    +L +  Q    E +       K+ +   +       ++S  V 
Sbjct: 1513 EEHDEVVAKLNTQ--ITKLTRDNQSAEEELNELRSKADKDKKKISELEEQVNELESRPVG 1570

Query: 474  GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
               + +  ++                +       +    ++  +L +       +     
Sbjct: 1571 TGNADENEIKIRD------------AQIADLNKALEMKGDQNNQLQATNKELKAKNNDLT 1618

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             +        +      K+L++            +     V +   +   L +  + L+ 
Sbjct: 1619 SKIEIAENEMKKLENAKKRLEQ----------DKDEADKAVSEQTIKRKGLEEEVKKLTT 1668

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            + + ++ QI   ++  + E+   L S + E+  Q+ Q  +  A  E
Sbjct: 1669 EIQALKFQINAPSSVAQEEEKQRLESDIAELKEQLEQERTTAANAE 1714



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/247 (9%), Positives = 72/247 (29%), Gaps = 16/247 (6%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
             E  +    +    +           +D +        +R +  +  +K           
Sbjct: 1505 LEELNKTVEEHDEVVAKLNTQITKLTRDNQSAEEELNELRSKADKDKKKISELEEQVNEL 1564

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
              +     +      ++  + +     + +    +   L     +  +  +     + I 
Sbjct: 1565 ESRPVGTGNADENEIKIRDAQIADLNKALEMKGDQNNQLQA--TNKELKAKNNDLTSKIE 1622

Query: 510  YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               NE++KL +       ++         Q +  +G  E +K+L  +++          +
Sbjct: 1623 IAENEMKKLENAKKRLEQDKDEADKAVSEQTIKRKGLEEEVKKLTTEIQALKFQINAPSS 1682

Query: 570  NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA--QVTAKGEAEKTAILISILHEVHIQ 627
               +  +              L     E+++Q+   + TA     +   + + L EV   
Sbjct: 1683 VAQEEEKQ------------RLESDIAELKEQLEQERTTAANAEAERKKIQAELDEVKFN 1730

Query: 628  IHQIESQ 634
            +  + +Q
Sbjct: 1731 LEDVTNQ 1737


>gi|163782787|ref|ZP_02177783.1| hypothetical protein HG1285_15666 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881908|gb|EDP75416.1| hypothetical protein HG1285_15666 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 975

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 79/221 (35%), Gaps = 17/221 (7%)

Query: 425 SQAIRDRLQQL--FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            + +   L +   F+      +   +           +   + L +  L K K+ K    
Sbjct: 250 KEKLSKLLSEEENFKALRERINLAKKVLPYLPYIERVEELGRELRELRLQKEKVLKDRVR 309

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-LPEEIHQRL 541
            E   L  + +    ++  Y  L  +R    ELQ L        +  +     EE+ + L
Sbjct: 310 VEGE-LKNIESEKEEVERAYASLPKLR---EELQSLAGERERLSLAGEEIRSIEELAESL 365

Query: 542 CE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDV---RQGYQQALALYKRFRLLSR 593
            E         E+LK  + +++    +    E  + ++    + Y++ L   +R R L  
Sbjct: 366 REKRKQLEEKEEVLKDREEKLQKGEAYIRQIEEELKELGYDEEEYERLLKEVERKRTLLE 425

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++++E    ++  K    K    +  L E+  ++ Q E +
Sbjct: 426 DQKKLENL--KIELKELEGKRKEKLRELEELRAELKQAEEE 464


>gi|170587384|ref|XP_001898456.1| hypothetical protein Bm1_35035 [Brugia malayi]
 gi|158594080|gb|EDP32670.1| hypothetical protein Bm1_35035 [Brugia malayi]
          Length = 1098

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 84/273 (30%), Gaps = 19/273 (6%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                    +E+     +       +R  E       +  + +    +  +   KD + R
Sbjct: 125 QTLEDTVAEYERQKYNVMGTFSEYRERVAERERKLEAEYSSRIIALSEEVLGAKKDFEAR 184

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               QA++D+ ++  ++ + +     +   +    R  +     L Q  +++ +  ++  
Sbjct: 185 MKSFQALQDKFEREKEQALEKLRQEHQKEIQLLEQRFSESQLLNLEQKYMIEIQRLEEER 244

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                         ++  E+ +            Q L+    +          E +    
Sbjct: 245 K-------------SLKAEKERLGETFEMKLRRAQSLYETELTAAKMLYSKELEALRDH- 290

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            E    ELL + D            T+ +  ++     +  AL KR  +   +   I K+
Sbjct: 291 EEALKEELLARQDEFHDRLQELQDQTKRSREELATCKNEVTALEKRLLVKEAEVVAISKE 350

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           + +   +         +  L +V  ++ + + Q
Sbjct: 351 LEEARNETNDS-----LRKLSQVENELQEAKQQ 378


>gi|115681681|ref|XP_797536.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115945058|ref|XP_001197750.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 678

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 80/276 (28%), Gaps = 19/276 (6%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434
             E+             +          E +  +      +K   +  +    +++ L  
Sbjct: 280 EAETKLKQQQNLYEAVRSDRNLYSKNLIESQDEITEMKRKLK---IMNHQIDQLKEELTA 336

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL--- 491
                + EH  + R  K+       K   QR+ Q +       +     E  LL  +   
Sbjct: 337 KEAALVKEHLDHQRVEKE---KEALKAELQRMKQQASESKAYIEAQEAEERKLLKIISEA 393

Query: 492 ----INHPAILQEQYQELA----DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
               +     L +   E       +   N+EL  L+  +            +   +    
Sbjct: 394 DAERLRQKKELDQVISERDILGTQLVRRNDELALLYEKIKIQHSTLGKGELQYRQRLEDI 453

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           R     +K+L R+        A  +    +V    ++ L    R + L  + E       
Sbjct: 454 RLLKLEIKKLRREKNILNKNVANVDDLRREVYHLQRELLRERTRCKALEEELENPMNIHR 513

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               +G    T  +I  +  +  ++  I+  E ++E
Sbjct: 514 WRKLEGSDPSTYEMIQKIQTLQKRL--IQKTEEVVE 547


>gi|274316012|ref|NP_445829.1| kinesin family member 3a [Rattus norvegicus]
          Length = 702

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/261 (10%), Positives = 78/261 (29%), Gaps = 15/261 (5%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
                 +     +    D L ++  +             E+   +     +D        
Sbjct: 340 NRAKNIKNKARINEDPKDALLRQFQKEIEELKKKLEEGEEVSGSDISGSEEDDNEEGELG 399

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           +    R ++  Q    + S       +     ++K    +L      + K   +   RE 
Sbjct: 400 EDGEKRKKRRDQAGKKKVSPDKMMEMQAKIDEERKALETKLDMEEEERNKARAELERREK 459

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLW----SFLFSDFVEQKYFLPEEIHQRL 541
            LL     H ++L    ++L+ +       +K+       L     ++K      +    
Sbjct: 460 DLLKAQQEHQSLL----EKLSALE------KKVIVGGVDLLAKAEEQEKLLEESNMELEE 509

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             +   +L K+L+ + ++         +   + +   ++   ++        +  +++++
Sbjct: 510 RRKRAEQLRKELEEKEQERLDIEEKYTSLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQE 569

Query: 602 IAQVTAKGEAEKTAILISILH 622
             +   +G  E    L   L 
Sbjct: 570 HQR-EIEGLLENIRQLSRELR 589


>gi|138532|sp|P24790|VIM4_XENLA RecName: Full=Vimentin-4
 gi|65209|emb|CAA34742.1| vimentin (Vim4) [Xenopus laevis]
          Length = 463

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 509 RYDNNELQKLWSFLFSDFVEQK--YFLPEEI---HQRLCERGFGELLKQLDRQVRDAGLW 563
                E++++   L     E+       + +    QRL E+   E++++ + +       
Sbjct: 142 DLYEEEMREIRRQLDQAINEKARVEVDRDNLGDDLQRLREKLQDEMIQREEAEGNLQSFR 201

Query: 564 SATTEANIVDVR-----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-IL 617
                A++  +      +  Q+ +   K+      +  E++ QI +   + + + +   L
Sbjct: 202 QDVDNASLARIDLERKVESLQEEIVFLKKLH--DEEIRELQLQIQESHIQVDMDVSKPDL 259

Query: 618 ISILHEVHIQ 627
            + L +V  Q
Sbjct: 260 TAALRDVRQQ 269


>gi|332822655|ref|XP_003311022.1| PREDICTED: protein Spindly [Pan troglodytes]
          Length = 527

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 71/201 (35%), Gaps = 8/201 (3%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + DR   + ++ I+    Y    K+N  +R Q    +  + + L       +   +E  
Sbjct: 182 EVEDRRAAMERQLISMKVKYQSLKKQNVFNRKQMQRMKLQIATLLQMKGSQTEFEQQER- 240

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD-FVEQKYFLPEEIHQRLCERG 545
           LL  L      ++    E+ ++     + + L+  + S   V+         +  L +  
Sbjct: 241 LLAMLEQKNGEIKHLLGEIRNLE----KFKNLYDSMESKPSVDSGTLEDNTYYTDLLQMK 296

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
              L K+++    +  +                ++  A  +  +L   +  ++  ++ ++
Sbjct: 297 LDNLNKEIESTKGELSIQRMKALFESQRALDIERKLFANERCLQLSESENMKLRAKLDEL 356

Query: 606 TAKGEAEKTAI--LISILHEV 624
             K E E+T    ++    EV
Sbjct: 357 KLKYEPEETVEVPVLKKRREV 377


>gi|327275147|ref|XP_003222335.1| PREDICTED: hypothetical protein LOC100562433 [Anolis carolinensis]
          Length = 1510

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 77/238 (32%), Gaps = 18/238 (7%)

Query: 418  QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            + L   + QA+ ++          +     +  ++            +  +    + + +
Sbjct: 1034 ETLERAHKQALEEQKNAHITAIEKQEKAQKKSLEEKKMAEAALEELLKTQRKIQEEQERA 1093

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            ++ +  E   +   +    I ++  + L +       L+ L         EQK      +
Sbjct: 1094 ERKAREERESVQKALEELEIAKK--KSLEEQLKAQKALEVLERAHKQALEEQKIAQIAAL 1151

Query: 538  HQR-------LCERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--R 587
             ++       L E+   E  L +L +  R         E    + R+  Q+AL   +  +
Sbjct: 1152 EEQEQAWKKSLEEKKMAEAALGELLKTQRKIQEEQERAERKAREERESVQKALEELEIAK 1211

Query: 588  FRLLSRQKEE------IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             + L  Q +       +E+   Q   + +  + A L          + + +  EA +E
Sbjct: 1212 KKSLEEQVKAQKALEVLERAHKQALEEQKIAQIAALEEQEQAWKRSLEEKKMAEAALE 1269


>gi|326492848|dbj|BAJ90280.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 631

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 35/357 (9%), Positives = 104/357 (29%), Gaps = 19/357 (5%)

Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
            L     ++    +  L        DG   G        +L     +    +       G
Sbjct: 110 PLPNRHEKFVWPWMGVLVNVPTEWKDGRQVGESGTRLKGELSQFCPLKVIPLWNFRGHTG 169

Query: 357 -------EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409
                  +D + F        + +              + ++   +    E   L   + 
Sbjct: 170 NAIVEFAKDWNGFRNALAFEQYFEAGGCGRRDWKQNQNQGSKLFGWVARAEDYNLSGLIG 229

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
           + +    D K           +  +L      +     +Y ++     ++   S   M  
Sbjct: 230 DHLRKNADLKTIDDLENEGTRKNNKLVANLANQIEVKNKYLEELELRYNETTASLEKMMG 289

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              +   +    +R+   L    +   I+ E     +++    +EL +  S    D   +
Sbjct: 290 QREQRLQAYNEEIRKMQQLARR-HSERIIDENQNLRSELESKMSELNE-RSKELDDLSAK 347

Query: 530 KYFLPEEIHQRLCERGFGE---LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
                  + Q   +         L  +++Q  +  +     +     V     + L L +
Sbjct: 348 SSHDRSNLEQEKQKNAIKSNHLKLATVEQQRANEDVVKLVRDQKREKV-AALNKILELEQ 406

Query: 587 RFRL---LSRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           +      L  + ++++ ++     +    ++E    +  +  E+  ++ ++++ E++
Sbjct: 407 QLEAKQTLELEIQQLKGKLEVMKHMPGHEDSEAKDKINQLSEELQDKMDELDAMESL 463


>gi|322498509|emb|CBZ33582.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 2676

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 68/224 (30%), Gaps = 25/224 (11%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
               LQ   ++               A+   ++  +    Q  L + +   +  +REA   
Sbjct: 1012 AAELQAALERLREAERRVAEEAAIRAQAEQERQAAHAESQRLLQEAEQRAEQRIREARDA 1071

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI------HQRLC 542
                    +LQ Q  +L D      E   +   L     EQ+  L  ++           
Sbjct: 1072 A-----EQLLQAQLADLRDEAVRRAEHAAVMQALAE--EEQRAVLEAKLQAAQRQLDEAQ 1124

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY------QQALALYKRFRLLS---R 593
            +R   E+ +        A   +A          + +      +  L L ++ R      R
Sbjct: 1125 QRAQEEVRRARADAAEMAAADAARAAREAQRRDEEWQERCRAEHLLRLAEQEREKEEAVR 1184

Query: 594  QKEEIEKQIAQV---TAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +  EIE + A+      +  A   A     L E+  +    E++
Sbjct: 1185 RLAEIEVRAAEAVRLAREEAARTAAEAQERLAEMERRQQAREAE 1228


>gi|312373405|gb|EFR21154.1| hypothetical protein AND_17454 [Anopheles darlingi]
          Length = 1884

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 54/173 (31%), Gaps = 4/173 (2%)

Query: 464  QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523
                Q+   + +L+   S  E  +      +  +  +    + +      +L KL S   
Sbjct: 847  SNTAQAESHRVELNALQSRLEEKMNAQTTEYDELSTQLMDRMQENEMLRKDLAKLQSD-A 905

Query: 524  SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
                E+       +   L +    +   +L++         +   A I   +   + A A
Sbjct: 906  EAKREELSVEVASLRDALDKAKLPDERVELEQANELLRKEISELRAEIEQQQALVKTAKA 965

Query: 584  LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +   L R+ +E++ ++ +      A            +   + +++   A
Sbjct: 966  ERIQ---LDRKCDELQTRLKEEMMARNAVALEAERQQAIAIAEHVAKLQQDLA 1015


>gi|291403581|ref|XP_002717954.1| PREDICTED: myosin, heavy polypeptide 7B, cardiac muscle, beta
            [Oryctolagus cuniculus]
          Length = 1933

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 77/225 (34%), Gaps = 18/225 (8%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             ++ +++    +   + S   R   +  +H        +  Q  L    +     L+E  
Sbjct: 1609 RVKKKMEGDLNEMEIQLSQANRTASEAQKHLKNAQAHLKDTQIQLDDA-VRANDDLKEN- 1666

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERG 545
             +  +    A+LQ + +EL  +       +KL    L       +    +       ++ 
Sbjct: 1667 -IAIVERRNALLQAELEELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKK 1725

Query: 546  FGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQALALYKRFRLLSRQ 594
                L QL  +V +A       E               ++++    +  L +  + + + 
Sbjct: 1726 MESDLTQLQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQT 1785

Query: 595  KEEIEKQIAQVTA---KGEAEKTAILISILHEVHIQIHQIESQEA 636
             ++++ ++ +      KG  ++   L + + E+  ++   + + A
Sbjct: 1786 IKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELEAEQKRNA 1830


>gi|221125217|ref|XP_002164697.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 1205

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 9/128 (7%)

Query: 521 FLFSDFVEQKYFLPEEIHQRL----CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
            +     E K  L +E    L      R    LL  L+  +          +A    +  
Sbjct: 160 LIIDLKTEAKNQLGQEYLDDLYEIARSRDDPLLLDSLENFLAATVDNLLRKQAENEYLEL 219

Query: 577 GYQQA-LALYKRFRLLSRQKEE----IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             ++A L   +    L ++ ++    +E++I Q   +  A +       L     ++ ++
Sbjct: 220 SLKRATLKNNEFSSQLEQEMDQHVQMLEEKIRQEEQQKLAIQKQEAYQQLIIAQKELAEM 279

Query: 632 ESQEAMIE 639
           E++  M+E
Sbjct: 280 ENKVKMLE 287


>gi|170583521|ref|XP_001896619.1| hypothetical protein [Brugia malayi]
 gi|158596143|gb|EDP34542.1| conserved hypothetical protein [Brugia malayi]
          Length = 1901

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 95/280 (33%), Gaps = 35/280 (12%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R          ++  + E       + + +++ R    + +R +  + F     E+    
Sbjct: 363 RLVRAALQEKNNKIKDYERKCNEYQDKLSERESRLSRMEELRRKSDEEFVDLKKENDKIR 422

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE------- 500
           R   K    R  +  ++RL +    K +  K     +  +L   INH   L +       
Sbjct: 423 R--DKEEVERKFRRLNERLERLDTEKNETQKAIEQLQNEILSLNINHQETLNDMFIKQQE 480

Query: 501 --------QYQELADIRYDN--------NELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
                      EL +   DN        N+L+K  + +     + +    + I +R    
Sbjct: 481 ELAERRKYFEDELEECHMDNTQRLVVLKNDLEKCRNEVEELRDQLRNAQADCIAERRRIA 540

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               ++ +    +R++   +               + + L +R   L  + ++ E  + +
Sbjct: 541 EKENVILEHQLALRNSRDENRDIRIANDAKD---VRLVELQRRMDSLELEAKQKEDSLIE 597

Query: 605 VTAKGE--AEKTAILISILHEVHIQIHQ-----IESQEAM 637
           +  +      + A L++ ++ +   I +      +++EA+
Sbjct: 598 IRNEKSILIAENASLLADINALRANITENKNIMGQNEEAL 637


>gi|154332077|ref|XP_001561855.1| structural maintenance of chromosome (SMC) [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134059176|emb|CAM36875.1| putative structural maintenance of chromosome (SMC) [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 1208

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/307 (8%), Positives = 88/307 (28%), Gaps = 38/307 (12%)

Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
           D  ++          +    +L       +        +    +A       +   +I  
Sbjct: 686 DLKAYAAQKEPLQALQQRTRTLETEYAALRNTLRQHQHDIQAYKAAEAAAELSKQRYIVA 745

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
                  +  + + +++                 +    + +     +    ++V+ ++ 
Sbjct: 746 ASSAQSGAAELAEEMEREHATMTEAQEKVAVLQAR----QCELAAQAQTTDLNVVRTEIE 801

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + +  EA +   + +      E  +  AD+     +L +    +  +  +Q+    +++
Sbjct: 802 NQLAAAEAHVARLMADEERGAAEFERLEADMEQQTADLSRKAQDMEEELAQQQS---QKL 858

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ---------------AL 582
                     + L  +  + +         E  I D ++   +                +
Sbjct: 859 KLTAQVEELKQQLVAVQARCKHNEERRQQLEKEIDDTQEELTRLAERKVTLDNLAKNGEV 918

Query: 583 ALYKR---FRLLSRQKEEIEKQ---IAQVTAKG----------EAEKTAILISILHEVHI 626
            L ++      L R   E E++   + +V              +A +TA  +  L E+  
Sbjct: 919 ELREQSRCLESLRRHIHEAEQRHSWLLEVRETFNQPGGPYDFSDAARTAATLQELREIEA 978

Query: 627 QIHQIES 633
           +   + +
Sbjct: 979 RAAAMSN 985


>gi|116872799|ref|YP_849580.1| DNA repair protein RecN [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741677|emb|CAK20801.1| DNA repair protein RecN [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 563

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 72/220 (32%), Gaps = 18/220 (8%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + +  RL  + +    E         +  R  +QK       + +               
Sbjct: 185 RELAQRLD-MLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYTAIQGEPG 243

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            L          + E  +++      + + + +   + S +   +     +I Q L +  
Sbjct: 244 GL--------EFIGEAMRQMETAASIHTDYKAVSEAISSSYYMLED-SMSQIRQSLDQLE 294

Query: 546 FG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-------LLSRQKEE 597
           F  + L Q++ ++ D           I D+ Q  Q+     ++          L  +   
Sbjct: 295 FQPDELNQIESRLNDLNQLKRKYGKTIEDIIQYEQEISREMEKLTNSESHVGHLETKMAT 354

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           ++ ++ +  +     +     ++  ++  +++Q+  ++A+
Sbjct: 355 LKTELTKQASALTDIRKKAAATLEKQIKQELNQLYMEKAI 394


>gi|332251622|ref|XP_003274945.1| PREDICTED: coiled-coil domain-containing protein 57 [Nomascus
           leucogenys]
          Length = 897

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 45/136 (33%), Gaps = 2/136 (1%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
            + Q   +++         KL         E      E + +   E    EL ++L  + 
Sbjct: 109 FRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRA--EATNAELERKLQSRA 166

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
            +     A + A + D+           K+     ++K E   ++A+             
Sbjct: 167 GELRDLEAVSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAH 226

Query: 618 ISILHEVHIQIHQIES 633
           +  L E+  ++ ++++
Sbjct: 227 VEQLQELQARVLELQA 242


>gi|325694098|gb|EGD36016.1| DNA repair protein RecN [Streptococcus sanguinis SK150]
          Length = 552

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 82/238 (34%), Gaps = 31/238 (13%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ----KGPSQRLMQSSLVKGKLSKKPSLR 483
           ++ R Q+ F +Y +         K    H+ +    +     +  ++L  G+ +     R
Sbjct: 157 LKGRYQETFDRYRSLRKQVLTLQKNQQEHKSRIEMLEFQMAEIESAALKSGEDTALHQER 216

Query: 484 EAAL-----------LLTLINHPAI-----LQEQYQELADIRYDNNELQKLWSFLFS--D 525
           +  L             T++++        ++    +L  I   +   ++L   L     
Sbjct: 217 DRLLNHKLIADTLMNAYTMLDNEDFSSLTNVRSAMNDLESIEDYDPAYKELSGSLSETYY 276

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +E      E+I   L   G   L  Q++ ++      +      + DV   + Q    Y
Sbjct: 277 VLEDVSKRLEDILDGLDFDGDRLL--QVESRLDLINSITRKYGGQVDDVLDYFAQISKEY 334

Query: 586 -------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                       + R+ + +E+++ ++  +    +  +   +  E+  ++  +  ++A
Sbjct: 335 SLLTGSNLSSEDMDRELKALERELVELAQELSQARHGLAAQLEAEIKQELQDLYMEKA 392


>gi|292493321|ref|YP_003528760.1| lipopolysaccharide biosynthesis protein [Nitrosococcus halophilus
           Nc4]
 gi|291581916|gb|ADE16373.1| lipopolysaccharide biosynthesis protein [Nitrosococcus halophilus
           Nc4]
          Length = 557

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/271 (9%), Positives = 81/271 (29%), Gaps = 25/271 (9%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
              + E       ++       +      + ++     Y + I   +++L ++     + 
Sbjct: 193 LISKLEAEYARFKEKNVARLPEMMGLNMSLLERVE-DQY-EEIEKTIRELKEQRTALAAQ 250

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR--EAALLLTLINHPAILQEQYQ 503
             +    +         + ++   +         P +   E  +    I    I  E+ +
Sbjct: 251 LSQTQPHSGESPVAHLKTLQMELFNASSKYSPNHPDIARLEREI---AILKDEIGNEKGE 307

Query: 504 --ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561
              +  + +  +EL K  +        +++     +   +      + L+++        
Sbjct: 308 SKLIEKLVFTRDELAKARTRY-----SEQHPDVIRLKNEV--ATLEDALREIPEGAEQTS 360

Query: 562 LWSATTEANIV---DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK----- 613
                  A I     +     Q  +   +   + ++  E+E++I Q+    +        
Sbjct: 361 QIKPDNPAYISIKAQLDAVDIQLASEKSKRVRVQKKLNELERRIQQMPQVEQKALELKRN 420

Query: 614 TAILISILHEVH-IQIHQIESQEAMIEGFGK 643
               +    E+   Q++   + +   EG G+
Sbjct: 421 YENAVKKYQEIKDKQLNAQIATQMEEEGKGE 451


>gi|195571583|ref|XP_002103782.1| GD18796 [Drosophila simulans]
 gi|194199709|gb|EDX13285.1| GD18796 [Drosophila simulans]
          Length = 1135

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 72/231 (31%), Gaps = 18/231 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---QRLMQSSLVKGKLSKKPS 481
            + +   +++  +    +     R       H      S    +L Q   +   ++K+  
Sbjct: 325 LEELAAIIKEQHRIDKEQLISVKREQGNTKNHARNFNVSLFQTKLDQMQNLVKVIAKERD 384

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQ 539
            ++  L         + Q     L        E  +L + +   ++ ++ +      + +
Sbjct: 385 NQQRKLQELEAVCIELRQHNEDLLTRYHLKEQEHGELLTEMRELNEALKGRGDAISRLQE 444

Query: 540 RLC-----ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           +       +R     L    +  ++        +  + ++ Q    A +       +SR 
Sbjct: 445 QHEAEVKRQRDLEAQLSNSQQAAQEKLQKIKQLQGRVEELEQANADAQSDVLSTSTISR- 503

Query: 595 KEEIEKQIAQVTAKGEA------EKTAILISILHEVHIQIHQIESQEAMIE 639
             E   ++ ++    E          A L   L E   Q++++E   A+ E
Sbjct: 504 -AEELSRLRELDEGYEEKYHKLRAIAAKLKKKLQEQTQQLNEMEQSGALKE 553


>gi|239827429|ref|YP_002950053.1| SNF2-related protein [Geobacillus sp. WCH70]
 gi|239807722|gb|ACS24787.1| SNF2-related protein [Geobacillus sp. WCH70]
          Length = 964

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 75/221 (33%), Gaps = 25/221 (11%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ-----SSLVKGKLSKK 479
            +A+++RL+    + +         + +         PS          S  +  + +  
Sbjct: 233 LRALKERLKGFCHRTLRRQVLEYIQYTERRPITFPFHPSDDEQALYQAISEFLMREDTYA 292

Query: 480 PSLREAALLLTLINHPAILQEQYQELAD-IRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              R+  L   +I    +L    Q LA  +      L+KL   L             +  
Sbjct: 293 IPQRQRTLTTLIIR--KLLASSSQALAGTLTTMKERLEKLRDGLLQQ-------EEADWI 343

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           + + E        ++   + D G+   T   +  +V    +Q          L  + +E+
Sbjct: 344 ENIIEE------DEMGSDLSDEGIELETEGHDREEVAATAEQI---NVNKEKLEAEIKEL 394

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE-SQEAMI 638
           E+ I    +     K+  L+  L     ++ +++ +++A+I
Sbjct: 395 ERYILWARSIQIDSKSRALLKALKLGFEKMQEMQANRKALI 435


>gi|123123549|emb|CAM16867.1| centrosomal protein 110 [Mus musculus]
 gi|123232831|emb|CAM17906.1| centrosomal protein 110 [Mus musculus]
          Length = 1781

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 59/150 (39%), Gaps = 11/150 (7%)

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
           TL+     +Q++ +EL  I  D   ++K  + L S   EQ                  + 
Sbjct: 96  TLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNAS----------LQQA 145

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
              L     +        +A    ++Q  ++ L   +  + + + + E E++  +  A G
Sbjct: 146 QGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLR-DALG 204

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +A+ +       +E+  Q+ Q++   ++++
Sbjct: 205 KAQSSEEKQQENNELRTQLKQLQDDNSLLK 234


>gi|148224094|ref|NP_001091476.1| Golgin subfamily A member 5 [Bos taurus]
 gi|146186919|gb|AAI40486.1| GOLGA5 protein [Bos taurus]
 gi|296475190|gb|DAA17305.1| golgin A5 [Bos taurus]
          Length = 732

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 93/255 (36%), Gaps = 12/255 (4%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSG 445
            E +       +   +++      +N +  +  R   ++A  + +R     +K + E   
Sbjct: 356 HEADATLKREQESYKQMQSEFAARLNKM--EVERQNLAEAVTLAERKHSDEKKRVDELQQ 413

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
             +  K +     Q+    +   + +++ K     SL+E +    L +  A   E  +  
Sbjct: 414 QVKVLKSSLDSSKQELADYKQKATRILQSKEKLINSLKEGSGFEGLDSSTANSVELEELR 473

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
            +      E+QKL   +     E +    +++ +        E L+ L  Q+        
Sbjct: 474 HEKETQREEIQKLMGQIHQLRSELQDIEAQQVSEA---ESAREQLQDLQDQIAGQRAAKQ 530

Query: 566 TTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
             EA +   +Q +      LY+    L  + ++ E +I ++  +   +  +       E+
Sbjct: 531 ELEAELDRQKQEFHYIEEDLYRTKNTLQSRIKDREDEIQKLRNQLTNKTLSNSSQ--SEL 588

Query: 625 HIQIHQIESQEAMIE 639
             ++HQ+   E +I+
Sbjct: 589 ENRLHQL--TETLIQ 601


>gi|18978215|ref|NP_579572.1| chromosome segregation protein smc [Pyrococcus furiosus DSM 3638]
 gi|18894028|gb|AAL81967.1| chromosome segregation protein smc [Pyrococcus furiosus DSM 3638]
          Length = 1291

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 61/173 (35%), Gaps = 30/173 (17%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSF--LFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
            +  +   E  ++   + +L +L        + +E+     +EI Q++        L +L
Sbjct: 814 ELRIKLSDEKKELELASKDLNRLLEEENAVKEEIEESERKIQEIEQKIENEKSE--LAKL 871

Query: 554 DRQVRDAGLWSATTEANIV--DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
             +++         +  +   + R+  ++   +      L  +   IE +I  + ++   
Sbjct: 872 RGRIQRLERKKEKLKKALENPEARELMEKIRIIDGEISSLKEELSRIESRIESLESRLNE 931

Query: 612 E----------KTAILISILHEVH--------------IQIHQIESQEAMIEG 640
           E          +   L++ ++ +                ++ +++S E  I+G
Sbjct: 932 ELLPRKASLEEEIEGLVNKINALKNNISENEKALELLNKELEKLKSIEENIKG 984



 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 87/277 (31%), Gaps = 19/277 (6%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
               +   K    +   E+L       K E  +    + + R +L    K      KD   
Sbjct: 776  DTTKLREKVESLRRRKEALEGELNSLKIELRSLENASFELRIKLSDEKKELELASKDLNR 835

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                  A+++ +++  +K             + A+ R +    +R  +      +  +  
Sbjct: 836  LLEEENAVKEEIEESERKIQEIEQKIENEKSELAKLRGRIQRLERKKEKLKKALENPEAR 895

Query: 481  SLREAALLLTLINHPAILQEQYQELADIR-----YDNNELQKL--WSFLFSDFVEQKYFL 533
             L E   +  +      +    +EL+ I       ++   ++L        + +E     
Sbjct: 896  ELMEK--IRII---DGEISSLKEELSRIESRIESLESRLNEELLPRKASLEEEIEGLVNK 950

Query: 534  PEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               +   + E       L K+L++                   ++  +    L ++  +L
Sbjct: 951  INALKNNISENEKALELLNKELEKLKSIEENIKGEIRTLREKRKKLEEDISKLREKKEVL 1010

Query: 592  SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
             R+ +E+     ++ A     + A L + L E   Q+
Sbjct: 1011 QRKLQEL-----EIEANTLKVRDAQLNAQLEEKKYQL 1042


>gi|50511089|dbj|BAD32530.1| mKIAA1749 protein [Mus musculus]
          Length = 922

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 71/215 (33%), Gaps = 7/215 (3%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           + ++  +F+K  T  S      + + +  +       L+           +   +    +
Sbjct: 267 KRKVNLVFEKIQTLKSRAAGSAQGSNQAPNSPSEGNSLLDQKNKLILEVSELQQQLQLEM 326

Query: 489 LTLINHPAILQEQYQELADIRYDN----NELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
               N     +   ++L ++R  +     E   L   L     E +  L E    ++   
Sbjct: 327 KNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMERE 386

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ---ALALYKRFRLLSRQKEEIEKQ 601
                ++ L  Q+ +      +T+ +    +    +    LA        S+ + ++ ++
Sbjct: 387 QHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIENVEVLASRSNSSEQSQAEADLREK 446

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           + +   +    + A L     ++  Q+  ++  EA
Sbjct: 447 VLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEA 481


>gi|47097000|ref|ZP_00234574.1| exonuclease, SbcC family [Listeria monocytogenes str. 1/2a F6854]
 gi|254898187|ref|ZP_05258111.1| SbcC family exonuclease [Listeria monocytogenes J0161]
 gi|254912320|ref|ZP_05262332.1| exonuclease [Listeria monocytogenes J2818]
 gi|254936647|ref|ZP_05268344.1| exonuclease [Listeria monocytogenes F6900]
 gi|47014622|gb|EAL05581.1| exonuclease, SbcC family [Listeria monocytogenes str. 1/2a F6854]
 gi|258609244|gb|EEW21852.1| exonuclease [Listeria monocytogenes F6900]
 gi|293590302|gb|EFF98636.1| exonuclease [Listeria monocytogenes J2818]
          Length = 1023

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 53/403 (13%), Positives = 115/403 (28%), Gaps = 28/403 (6%)

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
            A     K    D  +  +  I ++ G                +       +        
Sbjct: 9   QAFGAYAKKEVIDFEKLGTEQIFVISGKTGAGKSTIFD-----AISFAIFGKANTFDRES 63

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE--DPDSFIRCYGKTA 370
            S R     D +   +  A++  D +        +        G    P           
Sbjct: 64  FSMRSHFATDKEITEVTLAFRLKDKIYQISRIPQQEIAKQRGNGTTTSPQKAELYELIND 123

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             KL+  S+  V+   +   +             +   +  +  + D K +    Q +  
Sbjct: 124 EMKLLASSVRDVNTKMEELIQLNVDQFRQILMIPQGEFRELL--VSDSKEKEVILQRLAH 181

Query: 431 RL------QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR- 483
            +        L++K            KK A   +   P   +   +  +  + +  +++ 
Sbjct: 182 TVYYEKVENLLWEKQKQAEILVVEARKKVAELAELSLPGVEVSGKTTSEISVLQAEAIQS 241

Query: 484 EAALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-----EI 537
           E  +L  L N  +I+++Q  + +  +     +L   W  L     E      E      I
Sbjct: 242 EQMILTELENKLSIIRKQTSEAVEKVTLAKEQLLD-WQNLDKYTEEIATLEIEKDFYQAI 300

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV----DVRQGYQQALALYKRFRLLSR 593
             RL        L+  D           T E        +  +   Q   + K+   L+ 
Sbjct: 301 EVRLEAAKRASNLRSQDALCIRLKEQLETAEQTEKQVAFEAEEVKVQFSHVKKQKEALAE 360

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           ++ E+E     +    E E   + +  +  +  +  ++E +EA
Sbjct: 361 KEAELEINKRTLFQLEEMEPKILEL-EMISIQKRRAELEWKEA 402


>gi|328864918|gb|EGG13304.1| structural maintenance of chromosome protein [Dictyostelium
           fasciculatum]
          Length = 1153

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 61/145 (42%), Gaps = 8/145 (5%)

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELL 550
             P I++E Y  +AD  + + + QKL +   S   +      E++ + L  +  G+   +
Sbjct: 687 QKPHIIREAYTPIADRIFGSRDSQKLTTGDSSGRSQILRASVEQLVRELDGQIKGYRPQI 746

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ--VTAK 608
            Q +R+ RDA    +  +       Q YQ+      R +      + +E+Q+ +      
Sbjct: 747 DQCEREERDAAQKDSAFQQAFKQKDQEYQRLTRELYRVKT---DLKTLEEQLVEPTDEPT 803

Query: 609 GEAEKTAILIS-ILHEVHIQIHQIE 632
            E E+    I+  + E+  ++  IE
Sbjct: 804 DELEQGMETINKEMEEIQQELQSIE 828


>gi|257866133|ref|ZP_05645786.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257872463|ref|ZP_05652116.1| predicted protein [Enterococcus casseliflavus EC10]
 gi|257800067|gb|EEV29119.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257806627|gb|EEV35449.1| predicted protein [Enterococcus casseliflavus EC10]
          Length = 399

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/180 (9%), Positives = 58/180 (32%), Gaps = 8/180 (4%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY---DNNELQKLW 519
           + +  +    + +           +   ++ +  + +E+ Q     +       E ++L 
Sbjct: 135 TNQTNKQESKEQEKDHMIENLSFEIKELILENEQLQEEKNQLKKQQKVVAQQEAEAKELK 194

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
           + L      +K    EE   ++        ++QL+ ++          +      R  + 
Sbjct: 195 ASLVE--ANKKVKDLEEQLAKVDTEKLEVKIQQLEAKLAVQQEKEQQEKQTYEKERAEW- 251

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                 +  + L     ++++Q+A+          +     + E+   I  +  + A ++
Sbjct: 252 --TLKRQEIQQLQEVIADLKQQLAEKEELAANVSASESNEEVAELQATIEALREENAALQ 309


>gi|153838516|ref|ZP_01991183.1| chromosome partition protein MukB [Vibrio parahaemolyticus AQ3810]
 gi|260364815|ref|ZP_05777394.1| MukB N-terminal domain protein [Vibrio parahaemolyticus K5030]
 gi|260876973|ref|ZP_05889328.1| chromosome partition protein MukB [Vibrio parahaemolyticus AN-5034]
 gi|260898710|ref|ZP_05907206.1| chromosome partition protein MukB [Vibrio parahaemolyticus
           Peru-466]
 gi|149748083|gb|EDM58942.1| chromosome partition protein MukB [Vibrio parahaemolyticus AQ3810]
 gi|308089522|gb|EFO39217.1| chromosome partition protein MukB [Vibrio parahaemolyticus
           Peru-466]
 gi|308093636|gb|EFO43331.1| chromosome partition protein MukB [Vibrio parahaemolyticus AN-5034]
 gi|308113296|gb|EFO50836.1| MukB N-terminal domain protein [Vibrio parahaemolyticus K5030]
          Length = 1489

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 58/162 (35%), Gaps = 26/162 (16%)

Query: 499 QEQYQELADIRYDNNELQKLWSF----LFSDFVEQKYFLPEEIHQRLCER--GFGELLKQ 552
           +E  ++ A   +D+ ++Q+L+      + +         PE+    + E+      +L  
Sbjct: 798 EEVVEKHAKAAFDSQKMQRLYQAFNQFVANHIQVAFEADPEQALANVREKRGQIARVLAD 857

Query: 553 LDRQVRDAGLWSATTEANIVDVRQ-----GYQQALALYKRFRLLSRQKEEI--------- 598
           L+ + +       T++  +  + +        +   L  RF  L  +  ++         
Sbjct: 858 LEAKEQQHRSQLQTSKQALSSLDKLAPNMALIEDDTLQARFDELEEKIAQLSEAKAFLNN 917

Query: 599 -EKQIAQVTA-----KGEAEKTAILISILHEVHIQIHQIESQ 634
             K +A++         + E+   L +       Q+ +++ Q
Sbjct: 918 HAKAVAELEKIASALDADPEQFDALEAEYKAADEQLQELKKQ 959


>gi|133903947|ref|NP_494820.3| abnormal DYe Filling family member (dyf-14) [Caenorhabditis
           elegans]
          Length = 1942

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 39/352 (11%), Positives = 104/352 (29%), Gaps = 38/352 (10%)

Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390
           A      +             +    +D          +  E  +       +     + 
Sbjct: 282 ATLMRKAIRHAEQKNLDQKEQMKREKDDVLDETLRQLNSVTENYMKSEEKANERQRDLKR 341

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKL----RYYYSQAIRDRLQQLFQKYITEHSGY 446
           +        E+ +    +   ++ +  +      R      +  ++++L      E    
Sbjct: 342 KEDECRKLREQNDELSDILEQLSKMAHEMAGGRGRNETPMDVARKMRKLLTTKNGEIDES 401

Query: 447 GRYWKKNARHRDQKGP-----SQRLMQSSLVKGKLSKKPSLREAALLLT---------LI 492
               K+  + RD+         +R       + K S   S RE  L             I
Sbjct: 402 REAAKQAEKERDRAKKDLEKEEKRRKDDREAERKRSSVYSQREHDLKKLDDELRKASEKI 461

Query: 493 NHPAILQEQYQELA-----DIRYDNNELQKLWSFLF----SDFVEQKYFLPEEIHQRLCE 543
            +    +E  ++L       +   + + ++    L      +  E++    E +  +  E
Sbjct: 462 RNLEEQRESQEKLTISVQNSLNEAHRQHKQFIEELMIRHREELKEREDSHEEALRSKDTE 521

Query: 544 RG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
               F +   + ++  R++     T  +   DV            R  +L  +++E++K+
Sbjct: 522 ERSRFEKERSEREKIRRESDELRETQRSLKGDVAAMKTDLDDKTLRLDMLETERDELKKK 581

Query: 602 IAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
           +     + +           K   +     E+  ++ + ++    +EG GK+
Sbjct: 582 LETEREQADQRDLEIAECRAKLDEMAEKEAELRKELAEFQAIITAMEGEGKL 633


>gi|119472948|ref|XP_001258450.1| filament-forming protein (Tpr/p270), putative [Neosartorya fischeri
           NRRL 181]
 gi|119406602|gb|EAW16553.1| filament-forming protein (Tpr/p270), putative [Neosartorya fischeri
           NRRL 181]
          Length = 2023

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 74/211 (35%), Gaps = 18/211 (8%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           Q ++  L ++ Q+              +AR  +       +++++  +   + K + +  
Sbjct: 431 QELKATLDEMVQELEASKPEIDELRADHARLENAVVEMSNILETAGKERDDATKEARKWQ 490

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
             +  L     IL++Q ++L+       +++ L   +      +  +  EE+ +++  + 
Sbjct: 491 GQVEGLAREGDILRQQLRDLSA------QIKVLVMEVAVLKEGEATYDREEL-EKIARKE 543

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             +   +L             T   I      ++    L ++   L R   E+  ++   
Sbjct: 544 IDDSSAEL-----------NPTGRFISRHLTTFKDLHELQEQNVTLRRMLRELGDKMEGA 592

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            A+ +          L E+ I++     + A
Sbjct: 593 EAREKDAVRQQEQEELKELRIRVQTYRDEIA 623



 Score = 37.2 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 76/242 (31%), Gaps = 31/242 (12%)

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            L+  Y   + +  ++  +     +  + +    +++    +     + +S   +G  +  
Sbjct: 1165 LKERYESELAELQKRREEVLHQNNLLHTQLEGISSQIAALQKDRANIPESEQDEGTTAPN 1224

Query: 480  PSLREAALLLTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +  +          L+ + + +         E ++L   L      Q      ++ 
Sbjct: 1225 LEGLQEVI--------KFLRREKEIVDVQYHLSTQEAKRLRQQL-DYTQSQLDEARLKLE 1275

Query: 539  QRLCERGFGEL----LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            Q+       E       +L   + +  L+  ++      V+Q          R   L +Q
Sbjct: 1276 QQRRAAADSEHTALSHNKLMETLNELNLFRESSVTLRNQVKQAETALAEKSTRVDELLQQ 1335

Query: 595  KEEIEKQIAQVTAKGE----------------AEKTAILISILHEVH-IQIHQIESQEAM 637
             E +E +I ++    E                 ++T  ++     V   ++  ++ + A 
Sbjct: 1336 IEPLETRIRELENVVETKDGEMKLLQADRDRWQQRTQNILQKYDRVDPAEMEGLKEKLAS 1395

Query: 638  IE 639
            +E
Sbjct: 1396 LE 1397


>gi|315612489|ref|ZP_07887402.1| conserved hypothetical protein [Streptococcus sanguinis ATCC
          49296]
 gi|315315470|gb|EFU63509.1| conserved hypothetical protein [Streptococcus sanguinis ATCC
          49296]
          Length = 1889

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 12/81 (14%)

Query: 14 HIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS-CHVKG 71
           + I  +     ++  R+   + +  YWA    HD    SF  +  K  ++ +S     G
Sbjct: 10 SLDILEVARSLGMEMKRK---SHREYYWA---EHD----SFKIDTVKNVWHWYSQADKYG 59

Query: 72 DHLSFLSALLGCSFIESVQRL 92
          D +S +  +   S+ E++  L
Sbjct: 60 DPISLVQEMRNVSYKEAMVFL 80


>gi|312082996|ref|XP_003143677.1| trichohyalin [Loa loa]
 gi|307761159|gb|EFO20393.1| trichohyalin [Loa loa]
          Length = 1075

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 85/273 (31%), Gaps = 19/273 (6%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                    +E+     +       +R  E       +  + +    +  +   KD + R
Sbjct: 118 QTLEDTVAEYERQKYNVMGTFSEYRERVAERERKLEAEYSSRIIALSEEVLGAKKDFEAR 177

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               QA++D+ ++  ++ + +     +   +    R  +     L Q  +++ +  ++  
Sbjct: 178 MKSFQALQDKFEREKEQALEKLRQEHQKEIQLLEQRFSESQLLNLEQKYMIEIQRLEEER 237

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                         ++  E+ +            Q L+    +          E +    
Sbjct: 238 K-------------SLKAEKERLGETFEMKLRRAQSLYETELTAAKMLYSKELEALRDH- 283

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            E    ELL + D            T+ +  ++     +  AL KR  +   +   I K+
Sbjct: 284 EEALKEELLARQDEFHDRLQELQDQTKRSREELATCKNEVTALEKRLLIKEAEVVAISKE 343

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           + +   +         +  L ++ I++ + + Q
Sbjct: 344 LEEARNETNDS-----LRKLSQLEIELQEAKQQ 371


>gi|292654853|ref|YP_003534750.1| chromosome segregation protein SMC [Haloferax volcanii DS2]
 gi|291370379|gb|ADE02606.1| chromosome segregation protein SMC [Haloferax volcanii DS2]
          Length = 1240

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/294 (9%), Positives = 84/294 (28%), Gaps = 24/294 (8%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++      +    +    +     K                ++  +   IN       R 
Sbjct: 123 VKETPDNYYSYYYLNERSVNLSDIKDLLAQAGITPEGYNVVMQGDVTEIINMT--PYQRR 180

Query: 423 YYSQAIR------DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
                I       ++    F++             +      +        +++L    L
Sbjct: 181 GIIDEIAGVAEFDEKKDAAFEELEAVEERVDEADLRIEEKEARLDQLADERETALTYKGL 240

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE--QKYFLP 534
            ++    E  L    +       +  +  + I     +L+ L + L     +  +     
Sbjct: 241 REEKEEYEGYLKAAELEDK--RDDLSRTESRIESTEADLEDLQAELDERQGKVTRLEADL 298

Query: 535 EEIHQRLCERGFGELLK---QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
           E++ + +  +G  E L+   +++    D        +A          +    +      
Sbjct: 299 EDLTREIERKGEDEQLRIKSEMEEIKGDISRLENAIDAAEEKRDDAEAERRKAFVDIDRK 358

Query: 592 SRQKEEIEKQIAQ-----VTAKGEAE----KTAILISILHEVHIQIHQIESQEA 636
             Q +++E  I +      + K + +    + + + + +  V  +  +++S+ A
Sbjct: 359 QEQIDDLEDDIREVKVEKASVKSDIQSKRVELSEVQAEIDSVDTEFDELKSELA 412



 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 78/216 (36%), Gaps = 12/216 (5%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           + LQ    +   + +      +   R  ++KG  ++L   S ++ ++    S  E A+  
Sbjct: 278 EDLQAELDERQGKVTRLEADLEDLTREIERKGEDEQLRIKSEME-EIKGDISRLENAIDA 336

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                     E+ +   DI     ++  L   +    VE+     +   +R+        
Sbjct: 337 AEEKRDDAEAERRKAFVDIDRKQEQIDDLEDDIREVKVEKASVKSDIQSKRVELSEVQAE 396

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           +  +D +  +     A  +  + +++           R R   R  ++  ++  Q++   
Sbjct: 397 IDSVDTEFDELKSELAERKETLDELKDEKND------RQRAKDRLLDDARRRSNQISETR 450

Query: 610 EA-----EKTAILISILHEVHIQIHQIESQEAMIEG 640
           +      E+   L + + ++H ++   E  EA I+G
Sbjct: 451 DELERARERIPELKATVSDLHSELDTAEKNEAKIDG 486


>gi|254519216|ref|ZP_05131272.1| chromosome segregation protein SMC [Clostridium sp. 7_2_43FAA]
 gi|226912965|gb|EEH98166.1| chromosome segregation protein SMC [Clostridium sp. 7_2_43FAA]
          Length = 1187

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 85/287 (29%), Gaps = 20/287 (6%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH----LKNCINHIK 416
             I          L+ E+  +V    ++E   R  +  +             +  I  +K
Sbjct: 147 EAILSGKAEDRRALLEEAAGIVKFKSRKEEAERKLSNTENNLVRIRDIILTYEERIEPLK 206

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            ++ +    + + + L+      + E S      K+     +         +  +   + 
Sbjct: 207 IEREKALMYKTLAEELK------VKEVSVLVNNIKRIDEEINGISEDISGRKIDIEAKRN 260

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                  E  LL   I      +   ++           Q L +     F E+   L E 
Sbjct: 261 KLHKDKEELLLLENKIEELE-SKNNTEKSEYYTKKEELNQSLKN--IEIFKERIKNLEEV 317

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           I +         L   L   + +  L     E  I +  Q       L K  + L+R+ +
Sbjct: 318 IKR--DSSEVEALENSLKISIEEKNLLGKELEEKIKEQLQRENDIKRLEKEVQDLNREIK 375

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643
           E+E +I         ++   L+    E++  I  +  +    E  G 
Sbjct: 376 ELENKIQHF-----KDEEFELLRKTSEINNNISLLNKEILNKEELGA 417


>gi|222151067|ref|YP_002560221.1| hypothetical protein MCCL_0818 [Macrococcus caseolyticus JCSC5402]
 gi|222120190|dbj|BAH17525.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 1192

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ------KGPSQRLMQSSLVKGKLSKKP 480
            +R+++ QL +          +  +   + RD+            +    L     ++  
Sbjct: 693 QLREKVSQLNESISEAEFQLEQDKQNGIQLRDELHQLKLTREEIHIKLERLQSKLETRTQ 752

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             +E   +  L     ++ +  Q +         L +L   +     +      + + + 
Sbjct: 753 YDKERQEINQLEKDRVLIYDNIQTIEA------RLSELTDKI--KLYQNNAQNKKSLLEN 804

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           +       + K +++   D   +       +  +     +   L +    + R+K  ++K
Sbjct: 805 MQ-HEMQGIHKSINKLEADIHYYQKVKRDLLDKIETIEGELKHLSQLEHAIDREK--LQK 861

Query: 601 QIAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQEAMIE 639
           +I Q+    + +K     L   + ++   + +   QEA +E
Sbjct: 862 EIIQLEKSVDEDKEKKSFLHRQIEDLQQAVEEYIEQEAELE 902


>gi|229577000|ref|NP_001153416.1| EVI5-like protein isoform 1 [Homo sapiens]
 gi|332852432|ref|XP_003316105.1| PREDICTED: ecotropic viral integration site 5-like isoform 2 [Pan
           troglodytes]
 gi|222079952|dbj|BAH16617.1| ecotropic viral integration site 5-like [Homo sapiens]
          Length = 805

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 102/330 (30%), Gaps = 22/330 (6%)

Query: 319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES 378
              D    G     +  +           V     S  ED    ++    T  +    + 
Sbjct: 404 ALADRLIQGQVTRAQEAEENYVIKRELAVVRQQCSSAAED----LQKAQSTIRQLQEQQE 459

Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438
            P +   +    E     +     E    L+   + + D + R        + + QL ++
Sbjct: 460 NPRLTEDFVSHLETELEQSRLRETETLGALREMQDKVLDMEKRNSSLPD-ENNVAQLQEE 518

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR------EAALLLTLI 492
                   G+        + Q        Q+ L +G   K+   +      +  L+   +
Sbjct: 519 LKALKVREGQAVASTRELKLQLQELSDTWQAHLARGGRWKESPRKLVVGELQDELMSVRL 578

Query: 493 NHPAILQEQYQELADI-RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-RLCERGFGELL 550
                L E  +    +   +  +   +   L +    ++  L E++       +G    L
Sbjct: 579 REAQALAEGRELRQRVVELETQDH--IHRNLLNRVEAERAALQEKLQYLAAQNKGLQTQL 636

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
            +  R+  +A   S      +  +R+    A     R R+   + +  E +I       +
Sbjct: 637 SESRRKQAEAECKSKEEVMAV-RLREADSMAAVAEMRQRIAELEIQREEGRIQGQLNHSD 695

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEG 640
           + +       + E+  QI +++++  +++G
Sbjct: 696 SSQY------IRELKDQIEELKAEVRLLKG 719


>gi|195015961|ref|XP_001984312.1| GH16380 [Drosophila grimshawi]
 gi|193897794|gb|EDV96660.1| GH16380 [Drosophila grimshawi]
          Length = 932

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP---EEIHQRLCERG 545
              + +  +      +L  ++   ++ +   S L  D  +    L    E   +R+ +  
Sbjct: 466 RLKLENTELRDYYMGKLEKLK---SDYELQISSLKQDHEDDMRQLRGSHEADMERIRQAN 522

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             E     D       L +A+++  + ++R+G        ++     R+  + E+++  +
Sbjct: 523 MLEQSALRDHGSYLETLRTASSD--LQELREGITTTKEREQQLEARERRLADAERRLK-I 579

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             +G  E+   L+ ++  + +Q++++    A
Sbjct: 580 NEEGADEEKRRLMELVSTLELQMNRLSKDTA 610


>gi|163644263|ref|NP_001070932.2| ventricular myosin heavy chain-like [Danio rerio]
          Length = 1936

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 96/271 (35%), Gaps = 13/271 (4%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            + F++     A  +   + L    +   +E  +       E+  L    + C   IK++ 
Sbjct: 854  EEFLKLKEAYAKSEARRKELEEKMVTLLQEKNDLQLQVQAEQDNLCDAEERCEGLIKNKI 913

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 ++ + +RL +  ++   E +   R  +       +      L  + + K K + +
Sbjct: 914  QMEAKAKELTERL-EDEEEMNAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATE 972

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                    +  L    A L +   +L   +     LQ+       D   ++  +      
Sbjct: 973  NK------VKNLTEEMAALDDIIAKLTKEK---KALQEAHQQTLDDLQSEEDKVNTLTKA 1023

Query: 540  RLC-ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            ++  E+   +L   L+++ +              D++   +  + L    + L  + ++ 
Sbjct: 1024 KVKLEQQVDDLEGSLEQEKKIRMDLERAKRKLEGDLKLTQESIMDLENDKQQLEEKLKKK 1083

Query: 599  EKQIAQVTAKGEAEKT--AILISILHEVHIQ 627
            + +I+Q+ +K + E++    L   L E+  +
Sbjct: 1084 DFEISQLNSKIDDEQSIIIQLQKKLKELQAR 1114


>gi|114213580|gb|ABI54348.1| Abnormal dye filling protein 14, isoform c, partially confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 1898

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 39/352 (11%), Positives = 104/352 (29%), Gaps = 38/352 (10%)

Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390
           A      +             +    +D          +  E  +       +     + 
Sbjct: 238 ATLMRKAIRHAEQKNLDQKEQMKREKDDVLDETLRQLNSVTENYMKSEEKANERQRDLKR 297

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKL----RYYYSQAIRDRLQQLFQKYITEHSGY 446
           +        E+ +    +   ++ +  +      R      +  ++++L      E    
Sbjct: 298 KEDECRKLREQNDELSDILEQLSKMAHEMAGGRGRNETPMDVARKMRKLLTTKNGEIDES 357

Query: 447 GRYWKKNARHRDQKGP-----SQRLMQSSLVKGKLSKKPSLREAALLLT---------LI 492
               K+  + RD+         +R       + K S   S RE  L             I
Sbjct: 358 REAAKQAEKERDRAKKDLEKEEKRRKDDREAERKRSSVYSQREHDLKKLDDELRKASEKI 417

Query: 493 NHPAILQEQYQELA-----DIRYDNNELQKLWSFLF----SDFVEQKYFLPEEIHQRLCE 543
            +    +E  ++L       +   + + ++    L      +  E++    E +  +  E
Sbjct: 418 RNLEEQRESQEKLTISVQNSLNEAHRQHKQFIEELMIRHREELKEREDSHEEALRSKDTE 477

Query: 544 RG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
               F +   + ++  R++     T  +   DV            R  +L  +++E++K+
Sbjct: 478 ERSRFEKERSEREKIRRESDELRETQRSLKGDVAAMKTDLDDKTLRLDMLETERDELKKK 537

Query: 602 IAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
           +     + +           K   +     E+  ++ + ++    +EG GK+
Sbjct: 538 LETEREQADQRDLEIAECRAKLDEMAEKEAELRKELAEFQAIITAMEGEGKL 589


>gi|11596144|gb|AAG38502.1| STE20-like kinase [Homo sapiens]
          Length = 1001

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 56/156 (35%), Gaps = 21/156 (13%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              + + L + L            + + +RL E    +L    ++         +T    
Sbjct: 733 QTRQYKALRNHLLE---TTPKSEHKAVLKRLKEEQTRKLAILAEQYDHSINEMLSTQALR 789

Query: 571 IVDVRQGYQQALALYKRFRLL-----------------SRQKEEIEKQIAQVTAKGEAEK 613
           + + ++   Q L +  +  L                   R+  E+E++++   A  E + 
Sbjct: 790 LDEAQEAECQVLKMQLQQELELLNAYQSKIKMQAEAQHDRELRELEQRVSLRRALLEQKI 849

Query: 614 TAILISILHEVHIQIHQIESQEAM-IEGFGKMSGRL 648
              ++++ +E   +I  +  ++A  IE F   S RL
Sbjct: 850 EEEMLALQNECTERIRSLLERQAREIEAFDSESMRL 885


>gi|17227381|ref|NP_478432.1| ParB family chromosome partitioning protein [Nostoc sp. PCC 7120]
 gi|17134780|dbj|BAB77337.1| chromosome partitioning protein, ParB family [Nostoc sp. PCC 7120]
          Length = 314

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 17/150 (11%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522
           +++  +    +       S+RE  +L  L+  P +   +Y+ +A         ++L + L
Sbjct: 38  AKQPRRWFDPEKMSHLVQSVREHGILEPLLVRP-LGNGEYELIAGE-------RRLRAAL 89

Query: 523 FSDFVEQKYF-----LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
            +   E           + +   L E    E L  ++       L +   + +I DV+  
Sbjct: 90  EASLAEVPIVSKELTDKQALQVALLENLQREDLNPVEEVEAILELLAIDLDVSIEDVKSI 149

Query: 578 YQQALALYKRFRLL----SRQKEEIEKQIA 603
             +A    KR   L    SRQ E+IE  +A
Sbjct: 150 LNEAANAKKRNLELTGNVSRQLEQIEFILA 179


>gi|66821205|ref|XP_644107.1| hypothetical protein DDB_G0274893 [Dictyostelium discoideum AX4]
 gi|60472386|gb|EAL70339.1| hypothetical protein DDB_G0274893 [Dictyostelium discoideum AX4]
          Length = 915

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 83/222 (37%), Gaps = 21/222 (9%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            ++  L++   K   E        +K  +  ++   S   +Q  L   +     S +E  
Sbjct: 159 QVKGILKETEDKLEQEIKINKEKLEKLDKEINEHKDSINQLQERLESTQDQLSKSQQE-- 216

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
                  +    ++  +  + +  +  E+++L   +  +  +QK+   ++ + +L E+  
Sbjct: 217 -------NQEKSKDIEELKSQLELNLQEIERLKIEI--NSEKQKFENLQDTYNQLIEKN- 266

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            E++K L+ +V+                ++  +       + + L+++ +E+  ++ Q  
Sbjct: 267 KEIIKSLEEEVKIKDELQIALNELKEKNQEITEIKEKEEIKNQELTKENQELTLELTQSQ 326

Query: 607 AKGE---------AEKTAILISILHEVHIQIHQIESQEAMIE 639
            + +          E    L      +  ++++ E  + ++E
Sbjct: 327 QQNKDNESKINQHQETIEQLEQEKQTLQNELNKFEQDKEILE 368


>gi|328473214|gb|EGF44062.1| cell division protein MukB [Vibrio parahaemolyticus 10329]
          Length = 1487

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 58/162 (35%), Gaps = 26/162 (16%)

Query: 499 QEQYQELADIRYDNNELQKLWSF----LFSDFVEQKYFLPEEIHQRLCER--GFGELLKQ 552
           +E  ++ A   +D+ ++Q+L+      + +         PE+    + E+      +L  
Sbjct: 796 EEVVEKHAKAAFDSQKMQRLYQAFNQFVANHIQVAFEADPEQALANVREKRGQIARVLAD 855

Query: 553 LDRQVRDAGLWSATTEANIVDVRQ-----GYQQALALYKRFRLLSRQKEEI--------- 598
           L+ + +       T++  +  + +        +   L  RF  L  +  ++         
Sbjct: 856 LEAKEQQHRSQLQTSKQALSSLDKLAPNMALIEDDTLQARFDELEEKIAQLSEAKAFLNN 915

Query: 599 -EKQIAQVTA-----KGEAEKTAILISILHEVHIQIHQIESQ 634
             K +A++         + E+   L +       Q+ +++ Q
Sbjct: 916 HAKAVAELEKIASALDADPEQFDALEAEYKAADEQLQELKKQ 957


>gi|327458740|gb|EGF05088.1| DNA repair protein RecN [Streptococcus sanguinis SK1057]
          Length = 559

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 84/243 (34%), Gaps = 38/243 (15%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ----KGPSQRLMQSSLVKGKLSKKPSLR 483
           ++ R Q+ F +Y +         K    H+ +    +     +  ++L  G+ +     R
Sbjct: 157 LKGRYQETFDRYRSLRKQVLTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQER 216

Query: 484 EAAL-----------LLTLINHPAI-----LQEQYQELADIRYDNNELQKLWSFLFS--D 525
           +  L             T++++        ++    +L  I   +   ++L   L     
Sbjct: 217 DRLLNHKLIADTLTNAYTMLDNEDFSSLTNVRSAMNDLESIEDYDPAYKELSGSLSETYY 276

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +E      E+I   L   G   L  Q++ ++      +      + DV   + Q    Y
Sbjct: 277 VLEDVSKRLEDILDGLDFDGDRLL--QVESRLDLINSITRKYGGQVDDVLDYFAQISKEY 334

Query: 586 --------------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                         +  + L R+  E+ ++++Q      A+  A +   L +++++  + 
Sbjct: 335 SLLTGSNLSSEDMDRELKALERELVELAQELSQARHGLAAQLEAEIKQELQDLYMEKARF 394

Query: 632 ESQ 634
           + Q
Sbjct: 395 KVQ 397


>gi|323487818|ref|ZP_08093076.1| hypothetical protein GPDM_00685 [Planococcus donghaensis MPA1U2]
 gi|323398552|gb|EGA91340.1| hypothetical protein GPDM_00685 [Planococcus donghaensis MPA1U2]
          Length = 443

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 70/212 (33%), Gaps = 22/212 (10%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            D+L  L ++                +   +   +Q  ++  + K               
Sbjct: 27  ADKLSDLEKQQQEAQQKQSELNAGIQQKASEISQNQTTLEKIIAKISELDSQ-------- 78

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             ++     +     E+   + + +EL+K    L     E++  L E         G  +
Sbjct: 79  --IVETQDKIDVAQAEIDQTKVEIDELRKSIEELERKIAEREELLKERARAIQLSGGSVD 136

Query: 549 LLKQLDRQVRDAGLWSATTEANI-VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            +  L             +  NI ++  +   +  A  K+   L+ QK E+E ++A+  A
Sbjct: 137 YIDVLLGANSFVDFIDRFSAVNILIEADREIMREQAADKKL--LAEQKAEVETKLAEQEA 194

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                      + L ++   +   ++++A +E
Sbjct: 195 TK---------AELVDLKNSLAAQKNEQAQLE 217


>gi|224048241|ref|XP_002190081.1| PREDICTED: similar to chromosome 6 open reading frame 204
           [Taeniopygia guttata]
          Length = 808

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 72/212 (33%), Gaps = 12/212 (5%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           R+       ++  + +  Y   + +         ++ +  L + +       ++   L  
Sbjct: 341 RVAGDQPTQVSPGTSHSSYPATSYQDSSNWESLMKIKEGLLRQKEFVIDRQNQQINNLHQ 400

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFS------DFVEQKYFLPEEIHQRLCER 544
            I    I  +  +    +  +   L  L   L+          E+     EE+ +++   
Sbjct: 401 KIRENEIRAQHARLSHLVHCEEPYLTNLQQPLYESTPLQPHISERSASHLEELERKIAAA 460

Query: 545 GFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGY-----QQALALYKRFRLLSRQKEEI 598
              EL L ++ +Q+ +            +  R  Y     ++     ++ +   R+ E +
Sbjct: 461 ENKELQLSEIVKQLSNKSSEEKKKMEEKLKTRDRYINSLKKKCQKESEQNKEKQRRIETL 520

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           EK +A +    + E     + IL E + Q+ +
Sbjct: 521 EKYLADLPTLDDIEGQTKQLQILEEKNKQLQE 552


>gi|218296102|ref|ZP_03496871.1| putative cytoplasmic protein [Thermus aquaticus Y51MC23]
 gi|218243479|gb|EED10008.1| putative cytoplasmic protein [Thermus aquaticus Y51MC23]
          Length = 746

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 65/226 (28%), Gaps = 11/226 (4%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           ++L  L        +      +K AR    +   + L      K  L    +L E  L  
Sbjct: 304 EKLSLLEAALKEAEANL--RAEKKARLIQLEARLRSLPLPEEAKASLEAAFALAEETLRE 361

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE------ 543
             +    +L+ +   L        E ++           +     E     L E      
Sbjct: 362 GGLPDLKLLEGELARLEAEARRQEEERRKLEAEMEALARELAAKGEAFAPLLEELRAVPL 421

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS--RQKEEIEKQ 601
               + L ++  +     +      A    +++  ++  AL      L      E+ E+ 
Sbjct: 422 EALPQRLPEIKARYAALLMTQGEEAALKAKLKEAEEELKALRPEALALGLWESLEKAEEA 481

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQ-IHQIESQEAMIEGFGKMSG 646
           +A+      A     +         + + ++   EA+ E F    G
Sbjct: 482 LAKGELPDLAALRREVAQAREAARQEALEELSRMEALAERFLGFGG 527


>gi|195047003|ref|XP_001992252.1| GH24649 [Drosophila grimshawi]
 gi|193893093|gb|EDV91959.1| GH24649 [Drosophila grimshawi]
          Length = 1566

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/264 (9%), Positives = 83/264 (31%), Gaps = 12/264 (4%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            ++         +E +++      +    +   +     +K+  ++    + ++ +  ++ 
Sbjct: 894  QAENQDLNSECQELQSQLELEKQQVQRAQAEAEQLHLQLKEFNVKQLELEELKAKQLEME 953

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            +    +        K+              +++  ++    K+  L E  +    +    
Sbjct: 954  ELKAKQLEMEELKAKQLQ---------LEAVRAMQLEELKLKQLELEELKIKQLELEKLK 1004

Query: 497  ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
            + + + +EL   + +  EL+     L SD          ++  +  E     L ++++  
Sbjct: 1005 VKELELEELKAKQLELEELKA--KQLESDLKPATPSDESQVLLQEKEAEIVHLKQRIEEL 1062

Query: 557  VRDAGLWSATTEA-NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            +R+        E        Q  +      +      +Q+ E              +   
Sbjct: 1063 MREDQTEKLVVEILTKNQELQMLRMQNKQLQEEHQQHQQELEKLNASQAAKEVEHPDAKV 1122

Query: 616  ILISILHEVHIQIHQIESQEAMIE 639
             L   L ++     Q++ +++ +E
Sbjct: 1123 ELQRELEQLQQHFAQLQQEKSEME 1146


>gi|168065054|ref|XP_001784471.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663996|gb|EDQ50733.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 212

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQG-YQQALALYKRFRLLSRQKEEIEKQI-----AQV 605
           +L  Q ++     A  EA    +    ++Q+ +       L R+  E+E ++      Q 
Sbjct: 10  ELRNQYQEEKNRVAELEAGRSKLEDDFWRQSESSKMENEQLKRRIAELEAEMITVTTQQG 69

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                +     L   +H +  Q+ + ++Q A++E
Sbjct: 70  EVNLASTSLRELEKQVHALKEQLKERDTQIALLE 103


>gi|254829449|ref|ZP_05234136.1| exonuclease [Listeria monocytogenes FSL N3-165]
 gi|258601865|gb|EEW15190.1| exonuclease [Listeria monocytogenes FSL N3-165]
          Length = 1023

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 53/403 (13%), Positives = 115/403 (28%), Gaps = 28/403 (6%)

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
            A     K    D  +  +  I ++ G                +       +        
Sbjct: 9   QAFGAYAKKEVIDFEKLGTEQIFVISGKTGAGKSTIFD-----AISFAIFGKANTFDRES 63

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE--DPDSFIRCYGKTA 370
            S R     D +   +  A++  D +        +        G    P           
Sbjct: 64  FSMRSHFATDKEITEVTLAFRLKDKIYQISRIPQQEIAKQRGNGTTTSPQKAELYELIND 123

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             KL+  S+  V+   +   +             +   +  +  + D K +    Q +  
Sbjct: 124 EMKLLASSVRDVNTKMEELIQLNVDQFRQILMIPQGEFRELL--VSDSKEKEVILQRLAH 181

Query: 431 RL------QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR- 483
            +        L++K            KK A   +   P   +   +  +  + +  +++ 
Sbjct: 182 TVYYEKVENLLWEKQKQAEILVVEARKKVAELAELSLPGVEVSGKTTSEISVLQAEAIQS 241

Query: 484 EAALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-----EI 537
           E  +L  L N  +I+++Q  + +  +     +L   W  L     E      E      I
Sbjct: 242 EQMILTELENKLSIIRKQTSEAVEKVTLAKEQLLD-WQNLDKYTEEIATLEIEKDFYQAI 300

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV----DVRQGYQQALALYKRFRLLSR 593
             RL        L+  D           T E        +  +   Q   + K+   L+ 
Sbjct: 301 EVRLEAAKRASNLRSQDALCIRLKEQLETAEQTEKQVAFEAEEVKVQFSHVKKQKEALAE 360

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           ++ E+E     +    E E   + +  +  +  +  ++E +EA
Sbjct: 361 KEAELEINKRTLFQLEEMEPKILEL-EMISIQKRRAELEWKEA 402


>gi|126278140|ref|XP_001380074.1| PREDICTED: similar to alpha cardiac myosin heavy chain [Monodelphis
            domestica]
          Length = 1937

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            E    +L  +++  V++        +  I D     ++          L R K+ +E+ I
Sbjct: 1732 EADLSQLQSEVEESVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTI 1791

Query: 603  AQVTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              +  + +  +   L      L ++  ++ ++E++
Sbjct: 1792 KDLQHRLDEAEQIALKGGKKQLQKLEARVRELENE 1826


>gi|50307289|ref|XP_453623.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642757|emb|CAH00719.1| KLLA0D12584p [Kluyveromyces lactis]
          Length = 707

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 57/144 (39%), Gaps = 11/144 (7%)

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL----LKQ 552
           ++ +  + L  + + ++ L  L   LF  +  ++     +I + + +    +L    L++
Sbjct: 483 LMLKNSRNLIILSF-DSLLDFLKEDLFQHYASKENPEEYDIDRFISDSLEIKLTPLQLER 541

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQI--AQVT 606
             ++  +        E    + R   +Q     K+      LL+R+   I  ++   ++ 
Sbjct: 542 YVKEYDEIHKLETEKEQQYEEQRIKNRQLQKELKKLENDYSLLNREHITIANELIENRLR 601

Query: 607 AKGEAEKTAILISILHEVHIQIHQ 630
            +   ++   L+  + ++  Q+ +
Sbjct: 602 METLQDENKDLLLEIEDLKKQLER 625


>gi|75750466|ref|NP_690868.3| cytospin-B NSP5b3a [Homo sapiens]
 gi|56699512|tpg|DAA05630.1| TPA_exp: NSP5beta3alpha [Homo sapiens]
          Length = 790

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 89/280 (31%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   +    E+    
Sbjct: 496 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKMENGSLK 555

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   +    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 556 SHLQGEKQKATEASAVEQTAES--CEVQEMLKVARAEKDLLE--LSCNELRQELLKANGE 611

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 612 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 671

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + E    
Sbjct: 672 VEQHRAVKLHNNQLISELESSVIK----------LEEQKSDLERQLKTLTKQMKEETEEW 721

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 722 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 761


>gi|148221985|ref|NP_001080907.1| vimentin-4 [Xenopus laevis]
 gi|32450567|gb|AAH54161.1| Vim4 protein [Xenopus laevis]
          Length = 463

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 509 RYDNNELQKLWSFLFSDFVEQK--YFLPEEI---HQRLCERGFGELLKQLDRQVRDAGLW 563
                E++++   L     E+       + +    QRL E+   E++++ + +       
Sbjct: 142 DLYEEEMREIRRQLDQAINEKARVEVDRDNLGDDLQRLREKLQDEMIQREEAEGNLQSFR 201

Query: 564 SATTEANIVDVR-----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-IL 617
                A++  +      +  Q+ +   K+      +  E++ QI +   + + + +   L
Sbjct: 202 QDVDNASLARIDLERKVESLQEEIVFLKKLH--DEEIRELQLQIQESHIQVDMDVSKPDL 259

Query: 618 ISILHEVHIQ 627
            + L +V  Q
Sbjct: 260 TAALRDVRQQ 269


>gi|15611123|ref|NP_222774.1| hypothetical protein jhp0052 [Helicobacter pylori J99]
 gi|4154552|gb|AAD05629.1| putative [Helicobacter pylori J99]
          Length = 327

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 73/261 (27%), Gaps = 8/261 (3%)

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
             + E E R     DE  EL    +       + K      +   D+L     K   E++
Sbjct: 13  QIREELEARISELEDENTELLREREYLAAETSELKDANDQLRQKNDKLFITKDKLTKENT 72

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL-----TLINHPAILQ 499
                 +  +        S   +  +  K    K     E  +L       L     + +
Sbjct: 73  ELFAENESLSVKISGLEHSNDQLWQNNNKLTKEKAELKTEKDILAKENTRLLAARDRLTE 132

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           E+ +   +      E  +L   +     E K    E                 L+++   
Sbjct: 133 EKRELTTEKERLKRENTELTHKITELTKENKALTTENDKLNHQVTALTNERDSLEQERAR 192

Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTAI 616
                   E    ++ +  Q+     K+     +  E    Q+ Q         A+    
Sbjct: 193 LQDAHGFLEKRCTNLEKENQRLTDKLKQLESAQKSLENTNNQLRQALENSNVQLAQAKEK 252

Query: 617 LISILHEVHIQIHQIESQEAM 637
           +     E+  +I +++S E M
Sbjct: 253 IAIEKSELEREIARLKSLEGM 273


>gi|31075796|gb|AAP42284.1| p56 [Homo sapiens]
          Length = 441

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 85/247 (34%), Gaps = 18/247 (7%)

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
                 I   +++   S+  + R++Q  +  + +H+   + + K           +    
Sbjct: 132 IQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKEL 191

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAIL----QEQYQELADIRYD---------NNEL 515
               K +L         AL + +  + A+L    ++Q + +                  L
Sbjct: 192 QEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQYISAIEKQAHKCEELL 251

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRL--CERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
                 L      +K  L E+I + L    +   E+L++   + R     +  + A +  
Sbjct: 252 NAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLE- 310

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIE-KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            ++  + A+         + +K   E +++ +     + EK +  I    +   +I Q  
Sbjct: 311 -KEAMKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQET 369

Query: 633 SQEAMIE 639
            + A+IE
Sbjct: 370 VKAAIIE 376


>gi|28897811|ref|NP_797416.1| cell division protein MukB [Vibrio parahaemolyticus RIMD 2210633]
 gi|41017335|sp|Q87QW2|MUKB_VIBPA RecName: Full=Chromosome partition protein mukB; AltName:
           Full=Structural maintenance of chromosome-related
           protein
 gi|28806024|dbj|BAC59300.1| cell division protein MukB [Vibrio parahaemolyticus RIMD 2210633]
          Length = 1487

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 58/162 (35%), Gaps = 26/162 (16%)

Query: 499 QEQYQELADIRYDNNELQKLWSF----LFSDFVEQKYFLPEEIHQRLCER--GFGELLKQ 552
           +E  ++ A   +D+ ++Q+L+      + +         PE+    + E+      +L  
Sbjct: 796 EEVVEKHAKAAFDSQKMQRLYQAFNQFVANHIQVAFEADPEQALANVREKRGQIARVLAD 855

Query: 553 LDRQVRDAGLWSATTEANIVDVRQ-----GYQQALALYKRFRLLSRQKEEI--------- 598
           L+ + +       T++  +  + +        +   L  RF  L  +  ++         
Sbjct: 856 LEAKEQQHRSQLQTSKQALSSLDKLAPNMALIEDDTLQARFDELEEKIAQLSEAKAFLNN 915

Query: 599 -EKQIAQVTA-----KGEAEKTAILISILHEVHIQIHQIESQ 634
             K +A++         + E+   L +       Q+ +++ Q
Sbjct: 916 HAKAVAELEKIASALDADPEQFDALEAEYKAADEQLQELKKQ 957


>gi|88704261|ref|ZP_01101975.1| GGDEF domain protein [Congregibacter litoralis KT71]
 gi|88701312|gb|EAQ98417.1| GGDEF domain protein [Congregibacter litoralis KT71]
          Length = 447

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 90/273 (32%), Gaps = 22/273 (8%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
              D   +  TE+R + + D+                   L     Q I+  ++    + 
Sbjct: 3   DQEDWKQRYLTESRDWESADKLLRRVATRLAIAAEGYSPDL-DAVLQRIQTHIRSGASRD 61

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI-- 497
           +    G      K      +  P       +  +   S         +LLTLI+  A+  
Sbjct: 62  LEADLGDLSRQIKGL-DSGRSAPKPAEAIETKAEETSSPPVHSDAREVLLTLIDEFAVTQ 120

Query: 498 -----LQEQYQELADIRYDNNELQKLWSFLFSD--FVEQKYFLPEEIHQRLCERG----- 545
                 +   + L   +  N   + L   +      +++     +E+ Q + E G     
Sbjct: 121 PGSGAFETLRETLERDKGSN-WHRVLERVIAEIRGLIQRISSDKQELQQLMQEVGEELGG 179

Query: 546 ----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                GE    L      A       +A +  ++    +   + +    +S+  E I K 
Sbjct: 180 ISQVLGEEHSGLKEGREQALALHDAMDAGVEQIQSRIAEESDITRLKADVSQSLESIRKG 239

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           I++   + +AE+ ++  +   E+  +I ++E++
Sbjct: 240 ISEF-IERDAERFSLAETRNEELRSRIEKMEAE 271


>gi|332255130|ref|XP_003276686.1| PREDICTED: CAP-Gly domain-containing linker protein 2 [Nomascus
           leucogenys]
          Length = 1036

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 89/255 (34%), Gaps = 18/255 (7%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           +E +  S    D+  +     +  ++ ++    +  Y+Q +     ++ Q          
Sbjct: 557 KEHQRESGVLRDKYEKALKAYQAEVDKLRAANEK--YAQEVAGLKDKVQQATSENMGLMD 614

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            +  K          S   ++++L  G  +++  + E   L  ++    I  E   EL +
Sbjct: 615 NWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGE---LKAVME--GIKMEHQLELGN 669

Query: 508 IRYDNN--------ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           ++  ++        E + L   L     E           +L  +     L+  + Q + 
Sbjct: 670 LQAKHDLETAMHVKEKEALREKLQEAQEELAGLQR-HWRAQLEVQASQHRLELQEAQDQR 728

Query: 560 AGLWSATTEANIVDVR-QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
                   E   +DV  +G  QA+   K    L+ +K    +++ +  A+G+ E    L 
Sbjct: 729 RDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQRAEAQGKQE-VERLR 787

Query: 619 SILHEVHIQIHQIES 633
             L     ++  +E+
Sbjct: 788 EKLLVAENRLQAVEA 802


>gi|312134983|ref|YP_004002321.1| SMC domain-containing protein [Caldicellulosiruptor owensensis OL]
 gi|311775034|gb|ADQ04521.1| SMC domain protein [Caldicellulosiruptor owensensis OL]
          Length = 857

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/271 (10%), Positives = 88/271 (32%), Gaps = 18/271 (6%)

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
              +  ++G  P    +  G+   E +  E          +E + R  +   +   L   
Sbjct: 422 YRLIEANQGRCPVCLRQINGQEEKEHIKNE-----IAAQGKEFKQRRDSLTKKLEILRKE 476

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
                  IK++++     +    +L  + +    +     +          Q   S +  
Sbjct: 477 FSELEEKIKNEEI----LRTREKKLHGMLENLKAKIDQKTQNISNLQNSIVQVTQSIKFC 532

Query: 468 QSSLVKGKLSKKPSLREAALLLT-------LINHPAILQEQYQELADIRYDNNELQKLWS 520
           +  + + K       RE ++L         L+     L+   +  +++  +  + + L  
Sbjct: 533 EEEIERLKEEMTYLKREISILSFDENYYTQLLQREKELEIYQRLFSELTVNKVKAENLKK 592

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            +     ++K  L +    +            +  +   + + +   E+ I ++++    
Sbjct: 593 GILEYQEQEKEILKKVEDLKHEIANLSTFAHAVMLEKVKSDILTC--ESKIKNLQESLNS 650

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            L           Q EE +++++++ ++ E 
Sbjct: 651 VLKELGILEQKLNQIEEAKEKLSRLESEIEE 681


>gi|268316831|ref|YP_003290550.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
 gi|262334365|gb|ACY48162.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
          Length = 775

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 82/281 (29%), Gaps = 29/281 (10%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
              + L +               +LE   +  I  I     +    + I + +       
Sbjct: 223 NTREELLEIYRTGEGPIELRGEYKLEGKTRIVITSIPYGIAKADLVEKIAEHIAAGKVPQ 282

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI--NHPAI 497
           +++         +      +    +  M        L  +  +     L  L+   +P +
Sbjct: 283 LSDVRDESTDEVRIVLELRRGADPEAAMAYLFRHTPLQTRFHVN----LTCLVPTANPEV 338

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQ 556
              +  +L  +      L+    F     V +  +  E++ +R+   RGF ++   LD  
Sbjct: 339 AAPRKVDLMTM------LRAFLEFRMEVVVRRLRYDLEQLERRIHILRGFEKIFGALDEA 392

Query: 557 VRDAGLWSATT----------EANIVDVRQGYQQALALYKRFR--LLSRQKEEIEKQIAQ 604
           +R                   + + V      +  L    R     + ++ EE E+Q A+
Sbjct: 393 IRIIRAARDKADAAQRLMHRFQLDDVQADAILETKLYKLSRLEIEAIRQELEEKERQAAE 452

Query: 605 VTAKGEAEKTA--ILISILHEVHIQIHQIESQEAMI--EGF 641
           + A    E     ++   L  +  Q             EGF
Sbjct: 453 LRALLADEAARWGLIREELKAIKKQFADARRTVIAGPDEGF 493


>gi|225423847|ref|XP_002278531.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1232

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 80/228 (35%), Gaps = 14/228 (6%)

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
           +  +   ++++    +   +        K     R +    Q  ++  + K +  ++   
Sbjct: 489 HLLKDELEKIRADITEQELQIHEETERLKVTEEERSEHHRLQLELKQEIDKCRHQEEMLQ 548

Query: 483 REAALLLTLINHPAILQEQYQELADI-RYDNNELQKL---WSFLFSDFVEQKYFLPEEIH 538
           +E   L        + ++ ++ L +       E++++      L    + ++  L +E  
Sbjct: 549 KEREDLK---QERIMFEKDWEALDEKRAVITKEMREIGDEKEKLEKLHLSEEERLKKEKL 605

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-- 596
                        +++++   A +       +        Q       R R L  + +  
Sbjct: 606 AMEEHIQRELEAVRIEKESFAAIMKHEQVTLSEKAQNDHSQMLRDFELRKRDLEIEMQNR 665

Query: 597 --EIEKQIAQVTAKGEAEKTAIL--ISILHEV-HIQIHQIESQEAMIE 639
             EI+K++ +     E E+   L  I+ L EV   +I +++++   IE
Sbjct: 666 QDEIQKRLQERERAFEEERERELNNINHLKEVARREIEEMKTERRRIE 713


>gi|297467407|ref|XP_001251458.3| PREDICTED: PTPRF interacting protein alpha 1-like [Bos taurus]
          Length = 794

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 71/220 (32%), Gaps = 19/220 (8%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           L++          G      K        G +     S      L++   L+E  ++   
Sbjct: 179 LKEKKNPEKILMDGVLDINPKQENMPSANGKASPQSHSLTCDSSLARVIQLQE--IINNQ 236

Query: 492 INHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           +   + ++E    L+    D   +L      L            +       +    + +
Sbjct: 237 LRDQSQMKELLAALSAQVTDLEEDLDMARKDLLKSEEFNVKLQRDVREAMAQKEDVEKRI 296

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR--------LLSRQKEEIEKQI 602
             L+++   A   +++         +      +L+++           L  +++++++ +
Sbjct: 297 TTLEKRYLAAQREASSVHDLDDKPEKEIANKDSLHRQEEDENRPLQEHLELEEQKLQQTL 356

Query: 603 AQVTAKGEAE-KTAILISIL-------HEVHIQIHQIESQ 634
            +     E E + A L++ L         +  ++ Q+E+Q
Sbjct: 357 LRAETLPEVEAELAQLVAALSKVEERHRNIKERLRQMEAQ 396


>gi|149640804|ref|XP_001509593.1| PREDICTED: similar to Hook-related protein 1 isoform 2
            [Ornithorhynchus anatinus]
          Length = 1880

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 75/239 (31%), Gaps = 20/239 (8%)

Query: 406  IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              L+  +  +K    R    +     L+Q   +   +     +  K+  +  + K  +  
Sbjct: 793  QTLQKSLEELKISSKRLEQLEKENKLLEQETSQLEKDKKQLEKENKRLRQQAEIKDITLE 852

Query: 466  LMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524
                 +   +   K   +E A+   + +    + +E  + +     D   L  L   L S
Sbjct: 853  ENNVKIGNLEKENKSLFKEIAVFKDSCVRLKELEKENKELVKRTTIDKKTLLTLREDLVS 912

Query: 525  DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                      E++  +       +L ++L++   +        +      +    +  + 
Sbjct: 913  ----------EKLKTQQMNNDLEKLTQELEKIGLNKERLLHDEQNTDDRYKLLESKLEST 962

Query: 585  YKRFRLLSRQ-KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIE 639
             K+   +  +    +E ++ + T          L   L  V      + Q + +E M++
Sbjct: 963  LKKSLEIKEEKIAALEARLEESTNFN-----QQLRQELKTVKKNYEALKQRQEEERMVQ 1016


>gi|149567920|ref|XP_001517614.1| PREDICTED: similar to hook1 protein, partial [Ornithorhynchus
           anatinus]
          Length = 756

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 49/458 (10%), Positives = 130/458 (28%), Gaps = 44/458 (9%)

Query: 218 IAFGGRTLSKGESVKYLNSPETIL--FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFII 275
            AF  R +  G+ ++ +  P   +  F++G        A   + KS R     N+++   
Sbjct: 47  TAFSERVIRDGDLIRLIGPPGHNVARFNRGAVTAPARRAPAQIPKSARPLQTFNTAAPCR 106

Query: 276 LVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAI 335
            V+   + +++ Q   Q   +             +       +   +      +      
Sbjct: 107 DVQELTNGVAMAQVLHQIDAAWFDEPWLARIREDVGDNWR--IKASNLKKILQQIMSYYH 164

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIR---------------CYGKTAFEKLIVESLP 380
           + +   +      +   ++   DP    R                               
Sbjct: 165 EGLGQRISEELVPDLSRITEDSDPTELGRLLQLILGCAVHCEKKQEHIQNIMTFEESVQH 224

Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
           ++    +      +              +     +++ +      + ++ R Q+L  +  
Sbjct: 225 VIMTAIQELMRKETPGPAAPAHGAGDLEQQLRMALENLQEALAEKEELKQRCQELDVQVA 284

Query: 441 T------------EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
                        E          N+        +++   + L   +L ++    EAA  
Sbjct: 285 ALQDEKNTLLSENELMNERLDQLDNSFDDPGTVVAKKYFHAQLQVEQLQEENFRLEAAKD 344

Query: 489 LTLINHPAI---LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
              ++   +   L E      ++     E + L   +    +        E    +    
Sbjct: 345 DYRLHCEDLEKQLIEFQHRNDELTGFAEETRALRDEIDVLRLSSDKASKLESTVEVYREK 404

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             + L+ L +QV+     +     N+V + +  ++A A   +     RQ +E+  ++   
Sbjct: 405 LRD-LQDLRQQVKTLQDTNMLYMQNMVSLEEELKKANAARAQLETHKRQIQELHAKLTGE 463

Query: 606 TAKGE---------AEKTAILISILHEVHIQIHQIESQ 634
           + + +          EK   L+     + IQ   ++  
Sbjct: 464 SKRADTLAFEMRRLEEKHEALLRERERLIIQRDTLKET 501


>gi|145484077|ref|XP_001428061.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395144|emb|CAK60663.1| unnamed protein product [Paramecium tetraurelia]
          Length = 666

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/275 (10%), Positives = 76/275 (27%), Gaps = 17/275 (6%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              ++     + +     +  ++D        +       E      H  +C     D  
Sbjct: 6   FQQLKKIRAESAKSGTNRNKQILDTSELLPRSSFHKKRKQEEPNNSFHEYSCSFRFPD-- 63

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +  Y Q ++     +            +  +       Q+   Q L +   +K  L + 
Sbjct: 64  -KERYEQELKQLKNNMNSLENENIRLKTKIHQMEDNQLKQEKMIQELDRIGPIKAPLLQA 122

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            +   A          A+ +E      +++  + ELQ +       F +      E+   
Sbjct: 123 LNSSTAQT--------ALKKEIANLRQELQKKDKELQIIKKT--QRFAQINELQIEKAAF 172

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
           +       + +  L +        +   +     +     Q        R L +  E ++
Sbjct: 173 QEETIRLKQQIDSLLQASLYNLQQNNVEQVIQDRIFALVAQIQQDLVHQRELEKLIERLK 232

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           K+  +  +    ++         E+   I Q+  Q
Sbjct: 233 KECLKYRS----QQIDQEYKSKREIKKLITQLREQ 263


>gi|114669064|ref|XP_523785.2| PREDICTED: myosin-4 isoform 2 [Pan troglodytes]
          Length = 1939

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 83/277 (29%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +   +   +    +       +      ELE   K     ++D +      
Sbjct: 1352 EEEQEAKAELQRGMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1411

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +Y   +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1412 NSKYASLEKTKQRLQNEVEDLMIDVERSNAACIALDKKQRNFDKVLAEWKQKYEETQAEL 1471

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+  S L     E         
Sbjct: 1472 EASQKESRSLSTELFKVKNAYEESLDHLETLKRENKNLQQEISDLTEQIAEGGKH----- 1526

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  + ++ +     +       R   +  +  +
Sbjct: 1527 ------------IHELEKVKKQLDHEKSELQTSLEEAEASLEHEEGKILR---IQLELNQ 1571

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1572 VKSEIDRKIAEKDEELDQLKRNHLRVVESMQSTLDAE 1608


>gi|104780919|ref|YP_607417.1| chromosome segregation SMC protein [Pseudomonas entomophila L48]
 gi|95109906|emb|CAK14611.1| Putative chromosome segregation SMC protein [Pseudomonas
           entomophila L48]
          Length = 1162

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           ++++R  ++     A  E     +++  +Q L   ++   L R+ ++  +Q  ++ A+  
Sbjct: 654 QEIERLGQEQLEQEALLEQLDEQLQRLREQQLDHEEQREQLRRRSQDESRQHGELKARLS 713

Query: 611 A--EKTAILISILHEVHIQIHQIESQEAM 637
           A   +   L   L  +  ++ +++ Q A+
Sbjct: 714 AGRARAEQLELRLRRLQEELAEVQEQRAI 742


>gi|507129|emb|CAA51436.1| fcrA64/14 [Streptococcus pyogenes]
          Length = 387

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 67/211 (31%), Gaps = 8/211 (3%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
           ++ + D +  + Q    +         +      Q   +  + QS L+    + +     
Sbjct: 73  ARELGDTINHMSQTISEQSRKIAALKSEAELKNQQALEALTIKQSRLLITNENAQLKEAI 132

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              + T+ N    +  + QELA  +          +       +Q     EEI  +L   
Sbjct: 133 EGYVQTIQNASREIAAKQQELAAAKSQLEA----KNAEIEALKQQDASKTEEI-AKLQSE 187

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
               L   L    R+     A  +    +  +   Q   L        R+  +++ ++ +
Sbjct: 188 A-ATLENLLGSAKRELTDLQAKLDTATAEKAKLESQVTTLENLLGSAKRELTDLQAKLDR 246

Query: 605 VTAKGE--AEKTAILISILHEVHIQIHQIES 633
             A+ E    + A L   L     ++  +++
Sbjct: 247 ANAEKEKLQSQAAALEKQLEATKKELADLQA 277


>gi|18043484|gb|AAH19486.1| Hook homolog 2 (Drosophila) [Mus musculus]
 gi|148679035|gb|EDL10982.1| hook homolog 2 (Drosophila), isoform CRA_c [Mus musculus]
          Length = 716

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 84/272 (30%), Gaps = 32/272 (11%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
           +  DE  +     +     +   + R    Q +R +++QL ++         +  ++  R
Sbjct: 295 DEMDELRQSSERARQLETTLNSCRRRLGELQELRRQVRQLEERNAGHAERTRQLEEELRR 354

Query: 456 HRDQKGP-SQRLMQSSLVKGKLSKKPSLREAALLLT--LINHPAILQEQYQEL----ADI 508
               +     +  Q   ++G+  ++    E  L     L     ++ ++ + L      +
Sbjct: 355 AGSLRAQLEAQRRQVQELQGQWQEEAMKAEKWLFECRNLEEKCDLVTKEKERLLTERDSL 414

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLP-----EEIHQRLCERGFGELLKQLDRQVRDAGLW 563
           R  N EL+                 P     E +   +      E L +L  + +     
Sbjct: 415 REANEELRCAQLQPRGLAQADLSLDPTPSGLENLAAEILPAELRETLVRLQLENKRLCQQ 474

Query: 564 SATTEANIVDVRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKGE-- 610
            A       ++++  ++A                +   L  Q EE++K + +   K E  
Sbjct: 475 EAADRERQEELQRHLEEANRARHGLEAQQRLNQQQLSELRAQVEELQKALQEQGGKTEDP 534

Query: 611 -------AEKTAILISILHEVHIQIHQIESQE 635
                   +    L     E+  +   IE  E
Sbjct: 535 TLLKRKLEDHLQKLHEADLELQRKREYIEELE 566


>gi|332366061|gb|EGJ43817.1| DNA repair protein RecN [Streptococcus sanguinis SK1059]
          Length = 552

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 80/243 (32%), Gaps = 38/243 (15%)

Query: 428 IRDRLQQLFQKYITEHSGYG--RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           ++ R Q+ F +Y +        +  ++  + R +    Q     S            +E 
Sbjct: 157 LKGRYQETFDRYRSLRKKVLTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDIALHQER 216

Query: 486 ALL-------------LTLINHPAI-----LQEQYQELADIRYDNNELQKLWSFLFS--D 525
             L              T++++        ++    +L  I   +   ++L   L     
Sbjct: 217 DRLLNHKLIADTLTNAYTMLDNEDFSSLTNVRSAMNDLESIEDYDPAYKELSGSLSETYY 276

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +E      E+I   L   G   L  Q++ ++      +      + DV   + Q    Y
Sbjct: 277 VLEDVSKRLEDILDGLDFDGDRLL--QVESRLDLINSITRKYGGQVDDVLDYFAQISKEY 334

Query: 586 --------------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                         +  + L R+  E+ ++++Q      A+  A +   L +++++  + 
Sbjct: 335 SLLTGSNLSSEDMDRELKALERELVELAQELSQARHGLAAQLEAEIKQELQDLYMEKARF 394

Query: 632 ESQ 634
           + Q
Sbjct: 395 KVQ 397


>gi|327292781|ref|XP_003231088.1| SMC protein [Trichophyton rubrum CBS 118892]
 gi|326466718|gb|EGD92171.1| SMC protein [Trichophyton rubrum CBS 118892]
          Length = 1309

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 71/235 (30%), Gaps = 27/235 (11%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           ++  Q  +T       Y +      ++   S+        +   S +P  RE + LL   
Sbjct: 767 EESLQGQLTGLEQRLAYSRDELSALEKNLESKSSEADFAKRQIKSVQPKYREKSALL--- 823

Query: 493 NHPAILQEQYQEL--ADIRYDNNELQKL-----WSFLFSDFVEQKYFLPEEIHQRLC--- 542
                L +  +E+  +    ++   +       +  +     +Q     E   ++L    
Sbjct: 824 ---ESLDQSIEEIQSSVTEVEDKVYRDFCKRLGYKNIQEYDAQQGSLQEEAAEKKLQFTT 880

Query: 543 -----ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                E       ++L             ++ +   + +   +  ++ +R   L+ +   
Sbjct: 881 QKTKIENQLSFEKQRLQATEVRIDGLKTQSQKDEAMIAELEAERRSIQERLDELNDELAS 940

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK-----MSGR 647
           + + +         E +  L     E+  +   +E+    I G         SGR
Sbjct: 941 LNETLQVQQNLFS-ESSENLAQQRRELQRRSKNVEATLKTISGLEADVQRHSSGR 994


>gi|325180317|emb|CCA14720.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 1507

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/385 (9%), Positives = 93/385 (24%), Gaps = 13/385 (3%)

Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315
            +  K        + + F  L++    + +         + S          R       
Sbjct: 549 QFAMKVFVARHTDDYNLFFQLLKQATFLQACLLFRFVASMRSCALQRMNRAYRNYAYPLA 608

Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375
            +      DD    A       ++     G            D                 
Sbjct: 609 DLAELLCFDDIDQAAEVCRQHGLIVSNHTGRGNIPSTEEDDMDEQELEETNDLAMIRFGG 668

Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY-YSQAIRDRLQQ 434
                +     K   E R         +     ++    + +     Y +   +   L+Q
Sbjct: 669 DFETDIELHRKKTPLEVRMSRNYILEKQRHHLRRDICRGVTEYSDNEYPFLSDLVQELEQ 728

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
             ++ +              R      PS     ++      +   S     L      H
Sbjct: 729 EERRRLYPDRKQYSDEYSRFRDFRVSPPSTAQRSNANGTQGSTHSVSDNSIDLARIASRH 788

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             +  ++   +  +     ELQK    L      ++            ++   +   +L+
Sbjct: 789 AELNSQRKLAMERLE----ELQK-GKELAEKRKREQEMSRLAEEMEAQQKKLEQEKLKLE 843

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQKEEIEKQIAQVTA 607
           ++ R+     A  +      +   Q+ L           R   L +++E + +   +   
Sbjct: 844 QKKREEADRLAKQKEMEKKRQDQLQRELDEKAEKERNRVRMEELEQERERMHRMEEETKR 903

Query: 608 KGEAEKTAILISILHEVHIQIHQIE 632
           + E      +     +   +  Q++
Sbjct: 904 RNEEIMRMKIAQAAKDRERKEKQLQ 928


>gi|320592505|gb|EFX04935.1| cytoskeleton assembly control protein [Grosmannia clavigera kw1407]
          Length = 1035

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 35/322 (10%), Positives = 94/322 (29%), Gaps = 37/322 (11%)

Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
              +D   F +   +   ++   +   +++    ++   +       + E E   ++   
Sbjct: 294 DEPDDMSEFWKTELERQNQEFADQQR-VLEERAAQQALMQQQAAMRAQQEFEQQQRDLAA 352

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
             + ++      QA      QL        +   +Y +     +      + L      +
Sbjct: 353 QQRREQEALAAQQAQWQTQGQLADLQRENLNARAQYEQDQLLLQQYDARVKALENELQQQ 412

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADI--RYDNNELQKLWS----FLFSDFV 527
              + +    +   +  L       + +Y+ LA +  +  +  L  L       L +   
Sbjct: 413 QVNAGRQHGAKDDQIKALQEQVNTWRSKYEALAKLYAQLRHEHLDLLQKFKQVQLKAASA 472

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
           ++     E++ + L  +   EL   +  + R          ++  D  +  ++      R
Sbjct: 473 QEAVDRREKLERELKTKNL-ELADMIRERDRALHDRDRVKGSSKDDTERLKRELRMAQDR 531

Query: 588 FRLLS---------------RQKEEIEKQIAQVTAKGEAEKTAI------LISILHEVHI 626
              L                R+  ++E+ +   T   E  +         L   L +   
Sbjct: 532 ADNLEKAKGNELSTMVSKYHRELADLEEALRLKTQALEEARGQARNGSSDLERELRDKED 591

Query: 627 QI--------HQIESQEAMIEG 640
           ++          +E  E + EG
Sbjct: 592 ELAVYKAGMDQALEELEVLKEG 613


>gi|301777566|ref|XP_002924201.1| PREDICTED: limbin-like [Ailuropoda melanoleuca]
          Length = 1223

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 103/363 (28%), Gaps = 51/363 (14%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           D +      +    ++       G        S  E        +G          +L  
Sbjct: 373 DLETRKKTESQYQREMAAMEEAEGLLKRVSERSAMECSSLLRTLHGLEQVHLRRSLALQQ 432

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
            +   K   +   F   +               IK    +          L Q +     
Sbjct: 433 EEDFAKAHRQLAIFQRHELHNIF-------FTQIKSAIFQGELKAEAAKMLLQDYADIQE 485

Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL------LLTLIN-- 493
           +      +++ + R+      S+R      +   +    +  +  L      L   I   
Sbjct: 486 KLEELMDFFQASKRYHL----SKRFGHREYLVQNMQSSETRVQGLLSTADTQLTLFIQKH 541

Query: 494 ------HPAILQEQYQELADIRYD-----NNELQ----KLWSFLFSDFVEQKYFLPEEIH 538
                     ++   + +    +      +N+L+    KL   L      ++  L +   
Sbjct: 542 ERAGYLDEEQMETLLERVQTEVFSIKQKLDNDLKQEKKKLHQKLI--LKRRREMLQKHKE 599

Query: 539 QRLCERGFGELLKQLDRQVRDAGLW---SATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           QR  +   GE L+  +   +  G W    A   A + D+++   QA     R   LS   
Sbjct: 600 QRKEQLSLGEALRAAEDASQYLGRWGSLLAEHSAALEDLQERLDQAALEELRALTLS-LS 658

Query: 596 EEIEKQIAQVTAKGEAEKTAI-----------LISILHEVHIQIHQIESQEAMIEGFGKM 644
           E+  +++ ++   G  ++              L     E+  +  Q+E +E   +  G  
Sbjct: 659 EKATEELRRLQNSGMTQELLKRGVPWLFLQQILEEHSRELAARAQQLEGEERDRDQEGVQ 718

Query: 645 SGR 647
           S R
Sbjct: 719 SVR 721


>gi|299747241|ref|XP_002911146.1| hypothetical protein CC1G_14578 [Coprinopsis cinerea okayama7#130]
 gi|298407430|gb|EFI27652.1| hypothetical protein CC1G_14578 [Coprinopsis cinerea okayama7#130]
          Length = 1932

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/106 (9%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 529  QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            Q       +     +      L+Q +  + +     A  E +   + +  +  +   ++ 
Sbjct: 1125 QNEEDKARLLA--EKLAMQTKLQQAEALLAEEKARQAAREKHAQKLAEEEKLKIEAERKE 1182

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              + +  ++ ++Q+A++ A+ +            ++  +I  +++Q
Sbjct: 1183 --MQQAIKDAQEQLARIEAEAQKAVGE----EKKKLEAEIKAMKAQ 1222


>gi|297690867|ref|XP_002822827.1| PREDICTED: hypothetical protein LOC100456882 [Pongo abelii]
          Length = 678

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 55/154 (35%), Gaps = 14/154 (9%)

Query: 499 QEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPE----EIHQRLCERG------F 546
           ++ YQ   D    +   + +  +  L      QK    E    ++  +L +        F
Sbjct: 85  EKVYQSRGDEDLGDMGEDEEAQFQMLMDRLGAQKVLEDESDVKQLWLQLKKEEPHLLSNF 144

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            + L ++  Q+++A       E  +      Y + +     +  + +Q +  ++Q     
Sbjct: 145 EDFLTRIISQLQEAHEEKNELECALKRKIAAYDEEIQHL--YEEMEQQIKSEKEQFLLKD 202

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    ++  L   L     ++ Q+  ++  +EG
Sbjct: 203 TERFQARSQELEQKLLCKEQELEQLTQKQKRLEG 236


>gi|256083882|ref|XP_002578164.1| lamin [Schistosoma mansoni]
 gi|238663525|emb|CAZ34402.1| lamin, putative [Schistosoma mansoni]
          Length = 1885

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/282 (10%), Positives = 84/282 (29%), Gaps = 26/282 (9%)

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE--IHLKNCINHIKDQK-LRYYYS 425
                 + E+    +                +         +++ +N IK +   R   +
Sbjct: 98  EERMSKVEEARKTYEDEITALRNLVDDLAKQKSKAELDSKQMRDELNDIKMKANKRDQEN 157

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + ++ +++ L ++       +  Y    + +   +   + + +    +  L      +  
Sbjct: 158 RNLQRKIENLERELSKYKQDHDAYQPLLSDYHVLEKRFEEMKRDLEAETLLRTDLENKIL 217

Query: 486 ALLLTLINHPAILQEQYQELADIRYD-----------------NNELQKLWSFLFSDFVE 528
            L   L     +  E+ ++L +                       EL+ +     S+  E
Sbjct: 218 GLKEQLDFRSRLFDEEREKLVERSLYIEEEVEGRKQAEYESRLTEELRSIRDQTASELEE 277

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
            K  + E    +L     G+L    +    DA    +          +            
Sbjct: 278 YKIQMEETFESKL-----GQLKSSANFSAEDASRQRSELLIARKRADELSHDLSKKIAEL 332

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            LL R+  ++E+Q+A      E++        ++ +  ++ +
Sbjct: 333 ELLQRRVADLERQLADERKDFESQLLFQ-RQEVNRLKEELEE 373


>gi|221120547|ref|XP_002165606.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 7746

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 99/297 (33%), Gaps = 22/297 (7%)

Query: 358  DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417
            D +   +  G    E L + +    ++      EN      +            +  I  
Sbjct: 5596 DAEDEKQRIGAEEAENLRIAAKEAENVHISEVAENSCIAAEEAEKVCFSEEAEQVY-ITA 5654

Query: 418  QKLRY---------YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
            +  +           +  A  ++L+   ++   +        K +     +         
Sbjct: 5655 EVEKSCITAEETEFLFLAAEAEKLRIAAEEAEKQRIAAKEDEKIHIAKEAENFCIAAEEA 5714

Query: 469  SSLVKGKLSKKPSLREAALLL--TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
              +   + ++K  + E  +           IL+   +E   +R    E +K+   +  + 
Sbjct: 5715 EKVRIAEEAEKARIAEKEVEKSQIATEKAEILRIATEEAEKLRIKEEEAEKVR--IAEEE 5772

Query: 527  VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             E+ +   EE  +        ++  ++  +  +  L +      +  V +  ++A    +
Sbjct: 5773 AEKSHIATEEAEKLHISEETEKM--RIAAEEAEKSLIAEEEAEKVHIVEEDAEKAHIAAE 5830

Query: 587  RFRLLSRQKEEIEK-QIAQVTAKGE---AEKTAIL-ISILHEVHIQIHQIESQEAMI 638
               +L    EE EK +IA+  A+      E+   L IS   E  ++I   E+++++I
Sbjct: 5831 ETEILRIAAEEAEKVRIAEEEAEKSRIATEEAEKLHISEKIE-KMRIAAEETEKSLI 5886



 Score = 38.3 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 83/280 (29%), Gaps = 13/280 (4%)

Query: 368  KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI-KDQKLRYYYSQ 426
            +   EK+ + +     +    E E       +         +     I +++  +   ++
Sbjct: 5107 EEEAEKVRIAAEEAEKLRIAAEAEKLRLAEEEAEKVRIAEEEADKVRIAEEEAEKLRLAE 5166

Query: 427  AIRDRLQQLFQK---YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               ++++   ++            +        +      +        K     + +  
Sbjct: 5167 EEAEKVRIAEEEAEKVRIAAEEAEKLHISEETEKMSSAAEEAEKSHIAEKEAEKLRIATE 5226

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLPEEIHQRLC 542
            EA  L         L+   +E   +     E +KL                 E++     
Sbjct: 5227 EAEKLCIAAEEAEKLRLAEEEAEKVHIAAEEAEKLRIAAEEAEKLRLAKKEAEKVRIAEE 5286

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVR-----QGYQQALALYKRFRLLSRQKEE 597
            E     L ++   +VR A   +        +V      +   + L L +    L    EE
Sbjct: 5287 EAEKLRLTEEEAEKVRIAAEEAEKLRIAAEEVEKVHIAEEEAEKLRLAEEAEKLRIAAEE 5346

Query: 598  IEK-QIA-QVTAKGEAEKTAILISILHEVHI-QIHQIESQ 634
             EK ++A +      AE+    + I  EV   +I + E++
Sbjct: 5347 AEKLRLAEEAEKVCIAEEETENLRIATEVEKVRIAEEEAE 5386


>gi|212715374|ref|ZP_03323502.1| hypothetical protein BIFCAT_00269 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661680|gb|EEB22255.1| hypothetical protein BIFCAT_00269 [Bifidobacterium catenulatum DSM
           16992]
          Length = 905

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 50/130 (38%), Gaps = 11/130 (8%)

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
           +E+ +++   + L+   S+L  +  +       E    L E    E L  L++++ D   
Sbjct: 415 EEIDELQRQVDRLKMEKSYLLGNPKDDAAASKAE--SELDESA-KERLDDLNKEIADKSE 471

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISIL 621
                      ++  +      + R   L ++ +E+  Q  +   +G+  K++ +    +
Sbjct: 472 KLNG-------LKARWDAEKNGHNRIGDLRKKLDELRTQAERYEREGDLAKSSAINYGEI 524

Query: 622 HEVHIQIHQI 631
             +  +I Q 
Sbjct: 525 PAIQKEIAQA 534


>gi|126327538|ref|XP_001374737.1| PREDICTED: similar to CENPJ [Monodelphis domestica]
          Length = 1362

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 89/299 (29%), Gaps = 38/299 (12%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            +         +   ++          + E    +  +  ++ +I     +N +    L  
Sbjct: 784  MIESMNDKVPEASRKASCTNMNNIDFDDERTWTDLEENESKHDIFGNEAVNELP---LMD 840

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            YYS+     +  L +    + +   +        +  K P   LM       K   +   
Sbjct: 841  YYSKT---EIANLDKAIKRKVAPIKKGDDLCKSSKSIKNPPSDLMMKFFPSLKPKPRSDT 897

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
                    L   P + + Q Q L D    +   Q L   +     E + F  E       
Sbjct: 898  -------HLATEPELNKSQEQPLGD----SVRSQILREKVVELETEIERFKAENASLAKL 946

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--------------- 587
                   L+ L +++ D     A   A I + ++   + L   +R               
Sbjct: 947  RSERENALENLRKEIADFEQQKAKELARIEEFKKEEMRKLQKERRVFEKYTTTARAIPDR 1006

Query: 588  -----FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
                  + L +Q  ++++++ +   K        L S +  +  +   +  +  ++E F
Sbjct: 1007 KEREEIQALKQQIADLQEELKRKETKWS-NTHGRLKSQIETLAKENTDLREEIKIMERF 1064


>gi|198282117|ref|NP_001122237.1| hypothetical protein LOC572199 [Danio rerio]
 gi|190337228|gb|AAI63007.1| Zgc:194470 [Danio rerio]
          Length = 539

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 77/252 (30%), Gaps = 18/252 (7%)

Query: 394 SFNTPDERAELEIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452
               P     L       +  I DQ  ++   + A +D +    +    ++       KK
Sbjct: 161 HHVKPSGLRLLYEEQLREMKKIADQMKIQRDLAVAAKDAMAGQLEMLKVKYEEALEARKK 220

Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL------A 506
                +   P      S+ +  +   +    E   L  +  H   ++E   ++       
Sbjct: 221 AELEIEAFRPDVDAATSARIALEKRLENLEVELEFLQRI--HKKEIEELMAQIYGSVAKV 278

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
           D+ +   +L      + + +        +++     +  +    + L+           T
Sbjct: 279 DVAFSLPDLASALKQIQAQYDSIAAQNLQDM-----DAWYKGKFQDLNNVSSRH---MET 330

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
             +   ++    ++     +    L  + E +   I +       E+   L + +  +  
Sbjct: 331 ARSAREEIMGYKKEMQNKQRELDALKNRNEALLLMIKEAQENYRKEE-EELHTRIETLKE 389

Query: 627 QIHQIESQEAMI 638
           ++  I+ + A++
Sbjct: 390 ELRSIKGKIALL 401


>gi|115372000|ref|ZP_01459312.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|310824624|ref|YP_003956982.1| hypothetical protein STAUR_7399 [Stigmatella aurantiaca DW4/3-1]
 gi|115370965|gb|EAU69888.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397696|gb|ADO75155.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1012

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 91/310 (29%), Gaps = 34/310 (10%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           R   +    ++      + D     E         D  + L+   +       D+ +   
Sbjct: 590 RERIQELVRRMAELRKSIRDEHLNAEALEEMMKDQDVSSALDDVERLMREGKVDEAMAK- 648

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKN------------ARHRDQKGPSQRLMQSSL 471
             Q +  ++ Q+ +        +G                   +   ++       +S  
Sbjct: 649 -LQELSMQMDQMMESLNNAQQEFGGEQYPELTEKFGKFMEDLQQTVQEQQQVSEATKSLR 707

Query: 472 VKGKLSKKPSLREA--ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF------LF 523
            K +   +  + E   A+   L+     +Q+ Y EL   + D+     +         L 
Sbjct: 708 DKARQQNRERISERGKAMKDELMRQVEQVQKSYAELGPEQLDSRAAAPMAEAQSQLENLK 767

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
           +   ++ + L  E  QR       + L  L  + R                 Q  Q+   
Sbjct: 768 NALKQEDFDLASEAAQR--AEEMAQQLAALGERQRQLDEMFGNPPDAREQSAQMAQRLQR 825

Query: 584 LYKRFRLLSRQKEEI-------EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              R + +++Q + +            +   +  +E+   L      +  Q+ ++E    
Sbjct: 826 DANRVQEVNQQLQSLFPQPGSQMSAQDRQQLQQLSEQQQSLEQRAQGLRQQMEEMEQTAP 885

Query: 637 MIEGFGKMSG 646
           +   FGK +G
Sbjct: 886 L---FGKEAG 892


>gi|67677951|gb|AAH97544.1| LOC443632 protein [Xenopus laevis]
          Length = 634

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 41/107 (38%), Gaps = 2/107 (1%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +    E I  +L       +L +    ++ A +     E + + +    + +   ++R  
Sbjct: 512 QNMPSEHIRNQLT--AMSTVLSKAVATIKPAHVLQEKEEQHQIAISAYQKNSRKEHQRIL 569

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +  EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 570 TRRQTIEERKERLENLNIQREKEEHEQREAELQKVRKAEEERLRQEA 616


>gi|13537551|dbj|BAB40711.1| myosin [Mizuhopecten yessoensis]
          Length = 1945

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 82/299 (27%), Gaps = 40/299 (13%)

Query: 376  VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
               +      ++ E  NR+    D++ +L   L     +++    +       + R+QQ 
Sbjct: 1362 SNEIQQWRSKFESEGANRTEELEDQKRKLVSKLTESEQNMEAANAKCSALDKAKSRMQQE 1421

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-AALLLTLINH 494
             +    E         +  + +     +    Q+ +   +   + + +E       L   
Sbjct: 1422 LEDLSIEVDRANANANQMEKKQRAFDKTTAEWQAKVNSLQSELENAQKESRGYSAELYRI 1481

Query: 495  PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-------------YFLPEEIHQRL 541
             A ++E    +  +R +N  L      L     E                   EE+   L
Sbjct: 1482 KASIEEYQDSIGSLRRENKNLADEIHDLTDQLSEGGRSTHELDKARRRLEMEKEELQAAL 1541

Query: 542  CERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR------------ 587
             E      +   ++ R   +        +  I +  + +      ++R            
Sbjct: 1542 EEAEGALEQEEAKVMRAQLEIATVRNEIDKRIQEKEEEFDNTRRNHQRALESMQASLEAE 1601

Query: 588  ----------FRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHEVHIQIHQIESQ 634
                       + L +   E+E  +           +        + E+   I + + Q
Sbjct: 1602 AKGKADAMRIKKKLEQDINELEVALDASNRGKAEMEKTVKRYQQQIREMQTSIEEEQRQ 1660



 Score = 37.2 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 78/231 (33%), Gaps = 20/231 (8%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            + +++Q  Q    +        +K  + +  K      +Q  + +         +E    
Sbjct: 939  KKKMEQDDQNLKKDIGDLENTLQKAEQDKAHKDNQISTLQGEMAQQDEQIGKLNKERKA- 997

Query: 489  LTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGF 546
                  P    ++    L       N L KL + L     E +     E+  +   E+  
Sbjct: 998  ------PEEANKKTGDSLQAEEDKCNHLNKLKAKLEQTLNELEDNLEREKKVRGGVEKAK 1051

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-------LSRQKEEIE 599
             ++ + L                   +VR+   +  +L  +          L R+ +E++
Sbjct: 1052 RKVEQDLKSTQETVEDLERVKRELEENVRRKETEITSLSSKLEDEQNLVGQLQRKIKELQ 1111

Query: 600  KQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQEAMIEGFGKMSGRL 648
             +I ++  + EAE+ A         E++ ++ ++   E + E  G  S ++
Sbjct: 1112 ARIEELEEELEAERNARAKVEKQRAELNRELEEL--GERLDEAGGATSAQI 1160


>gi|16803408|ref|NP_464893.1| DNA repair and genetic recombination [Listeria monocytogenes EGD-e]
 gi|47095951|ref|ZP_00233554.1| DNA repair protein RecN [Listeria monocytogenes str. 1/2a F6854]
 gi|224501689|ref|ZP_03669996.1| DNA repair and genetic recombination [Listeria monocytogenes FSL
           R2-561]
 gi|254898467|ref|ZP_05258391.1| DNA repair and genetic recombination [Listeria monocytogenes J0161]
 gi|254912042|ref|ZP_05262054.1| DNA repair protein RecN [Listeria monocytogenes J2818]
 gi|254936369|ref|ZP_05268066.1| DNA repair protein RecN [Listeria monocytogenes F6900]
 gi|16410784|emb|CAC99446.1| DNA repair and genetic recombination [Listeria monocytogenes EGD-e]
 gi|47015697|gb|EAL06627.1| DNA repair protein RecN [Listeria monocytogenes str. 1/2a F6854]
 gi|258608960|gb|EEW21568.1| DNA repair protein RecN [Listeria monocytogenes F6900]
 gi|293590008|gb|EFF98342.1| DNA repair protein RecN [Listeria monocytogenes J2818]
          Length = 563

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 74/220 (33%), Gaps = 18/220 (8%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + +  RL  + +    E         +  R  +QK       + +               
Sbjct: 185 RELAQRLD-MLRFQQQEIENADLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQGEPG 243

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545
            L          + E  +++      + + + +   + S +   +     +I Q L +  
Sbjct: 244 GL--------EFVGEAMRQMETAASIHTDYKAVSEAISSSYYMLED-SMSQIRQSLDQLE 294

Query: 546 FG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-------LLSRQKEE 597
           F  E L Q++ ++ D           I D+ Q  Q+  +  ++          L  +   
Sbjct: 295 FQPEELNQIESRLNDLNQLKRKYGKTIEDIIQYEQEISSEMEKLTDSESHVGHLETKLAT 354

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           ++ ++ +  A     +    +++  ++  +++Q+  ++A+
Sbjct: 355 LKTELTKQAATLTDIRKKAAVTLEKQIKQELNQLYMEKAI 394


>gi|326428466|gb|EGD74036.1| hypothetical protein PTSG_05730 [Salpingoeca sp. ATCC 50818]
          Length = 2081

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 62/218 (28%), Gaps = 12/218 (5%)

Query: 425  SQAIRDRLQQLFQKYI-----TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
               +  R+  L ++        E            +       +Q       V+    + 
Sbjct: 1487 RDELAQRIDALEEEARAHAHAQEQLVEAEEKVAAVQAEKASLQAQLEAAKGEVETAQEEG 1546

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
               +E  +         +   + ++         E+Q L   + +   E K    EE+++
Sbjct: 1547 KQAKE-EMARLAATLDEVTAAKEEKEQQAEALAEEMQALKEEVKAL--ESKARNQEELNE 1603

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             L +    E LK  D   R              +  +  Q          L+++ + + +
Sbjct: 1604 HLSD--LREQLKDKDAAARQMDELKEQLREAKKEAEKVPQLEEDAQNNATLIAKLRSKAK 1661

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
              I  + AK   E+       L  V  Q+   +   A 
Sbjct: 1662 SVITSLNAK--KEELLQAQQELDAVRAQLAVRDESSAA 1697


>gi|322710763|gb|EFZ02337.1| filament-forming protein [Metarhizium anisopliae ARSEF 23]
          Length = 2030

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 103/335 (30%), Gaps = 40/335 (11%)

Query: 324  DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP-LV 382
            D    R     ++L       G          G D  S  +   +     L  +      
Sbjct: 914  DHLQARVDELTVELRNAEERVGRLQPRPTPRPGLDDASQRQQELEAELHDLNNDISDLKR 973

Query: 383  DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-----YYYSQAIRDRLQQLFQ 437
            D+         +    ++  EL    +  +  ++  + +         +   +++++L Q
Sbjct: 974  DLDMANTQLENAKAQAEQYRELSQSNEELLADLRGSQEQYRQEMEAMIEEKDNKIKELSQ 1033

Query: 438  KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
            +         R   + ++ RD +G   R  +      +   K    E+A       H   
Sbjct: 1034 RIEDMSEELSRSNTELSQLRDSQGDVARKYEDEKTILEDELKRLKEESA------RHAEA 1087

Query: 498  LQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLD 554
             +   Q+L A     +   Q     L             ++ Q+L             L 
Sbjct: 1088 TRYHQQDLRAQAEIASKAQQDYEKELVKHAEA------AKLVQQLRTDYNALKSESASLR 1141

Query: 555  RQVRDAGLWSATTEANIVDVRQGYQQALA---------------LYKRFRLLSRQKEEIE 599
             +   A +  A +E++  D RQ  +Q +A               L+++   L+ Q   ++
Sbjct: 1142 AEAESAKVTLAQSESSWEDRRQQLEQEMAELTARREDVNAQNKLLHQQLEGLTAQVAALQ 1201

Query: 600  KQIAQVTAKGEAEKTA----ILISILHEVHIQIHQ 630
            ++ +    +G+   +       +  L E++  + +
Sbjct: 1202 QRRSNGDEEGDEGMSPVHVGDALEGLRELNNYLRR 1236


>gi|322385060|ref|ZP_08058710.1| DNA repair protein RecN [Streptococcus cristatus ATCC 51100]
 gi|321270970|gb|EFX53880.1| DNA repair protein RecN [Streptococcus cristatus ATCC 51100]
          Length = 552

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 81/243 (33%), Gaps = 38/243 (15%)

Query: 428 IRDRLQQLFQKYITEHSGYG--RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           ++ R Q+ F +Y +        +  ++  + R +    Q     S            +E 
Sbjct: 157 LKGRYQETFDRYRSLRKQVLTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDIALHQER 216

Query: 486 ALL-------------LTLINHPAI-----LQEQYQELADIRYDNNELQKLWSFLFS--D 525
             L              T++++        ++    +L  I   +   ++L   L     
Sbjct: 217 DRLLNHKLIADTLTNAYTMLDNEDFSSLTNVRSAMNDLESIEDYDPAYKELSGSLSETYY 276

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +E      E+I   L   G   L  Q++ ++      +      + DV + + Q    Y
Sbjct: 277 VLEDVSKRLEDILDGLDFDGDRLL--QVESRLDLINSITRKYGGQVDDVLEYFAQISKEY 334

Query: 586 --------------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                         +  + L R+  E+ ++++Q      A+  A +   L +++++  + 
Sbjct: 335 SLLTGSNLSSEDMDRELKALERELVELAQELSQARHGLAAQLEAEIKQELQDLYMEKARF 394

Query: 632 ESQ 634
           + Q
Sbjct: 395 KVQ 397


>gi|312966020|ref|ZP_07780246.1| putative helicase [Escherichia coli 2362-75]
 gi|312289263|gb|EFR17157.1| putative helicase [Escherichia coli 2362-75]
          Length = 963

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/224 (8%), Positives = 59/224 (26%), Gaps = 10/224 (4%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              +      + +    E   + + + +      +            ++  + +     E
Sbjct: 203 LMELYGMSTLIDEHTFGEVKAFRKQYMQADSDIAELKGRLSRFIKRTLRKNVLEYIKYTE 262

Query: 485 AALLLTLI----NHPAILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKY----FLP 534
              +            + +   + L            + L   +    +           
Sbjct: 263 RKAITIPFYPSEQEQDLYERVQKLLEREDSYALPKRHRHLTGLILRKLLSSSTKAVLNNL 322

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           + +  RL       +++     ++   +     +  + D                 L  +
Sbjct: 323 QILKTRLERLKLEGIVEDDMDIIQQIIMDDDLEDDIVEDAESVAPDTECKSVDSDALQAE 382

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
             E+E  I +    G   K+  L+S L +   Q+ ++ + + +I
Sbjct: 383 INELESLIVKAEQIGTDTKSKELLSGLEQGFAQLAEMGAAKKVI 426


>gi|308503821|ref|XP_003114094.1| CRE-SMA-1 protein [Caenorhabditis remanei]
 gi|308261479|gb|EFP05432.1| CRE-SMA-1 protein [Caenorhabditis remanei]
          Length = 4172

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/294 (9%), Positives = 97/294 (32%), Gaps = 20/294 (6%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
             +     A  K    +          +  +       +    +  +     +++  + + 
Sbjct: 1077 RKFDKLEADMKTNGGTQLKHINDIANDLISEGHGQSRQIESRQHKINAMWENLERLRKQR 1136

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                   +R+        +        +++  R+ +     Q L +       L  K + 
Sbjct: 1137 AVRLEATERVADFDTTCESAREWMLGKFEQLDRNPNDVKSLQNLERDLKP---LEDKIAA 1193

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
             E        +HP       +++A       EL+ L + L     E+     +   + + 
Sbjct: 1194 LEKLAAAVKKDHPEEAAAIERKIA-------ELRALHADLLRRAQEKMLLAEQTQGKEMF 1246

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK---EEIE 599
            E    +++  +++     G+       ++ +  +  ++   L ++ +    +    +E+ 
Sbjct: 1247 ESALRDMMGWIEK--TRKGMLEDVHPVDVAEAEELLKKHYELGEQIKDKKYEVEYCQELG 1304

Query: 600  KQIAQVTA-----KGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            +++ + +      + + +     ++ L +++ +   I  Q+  ++ F + S R+
Sbjct: 1305 RRLLERSPRMPKVEEQLQNLVSEMAALRDLYRRRDTILKQQLDLQLFNRESERI 1358


>gi|308162170|gb|EFO64579.1| Coiled-coil protein [Giardia lamblia P15]
          Length = 2276

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/268 (10%), Positives = 78/268 (29%), Gaps = 24/268 (8%)

Query: 382  VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
                     E  ++   + R        + +  I D  L+   +Q          ++ + 
Sbjct: 1203 YRDAIGFLKEELAYKDHEIRRMRADSAPSEVAQIVDASLKQALAQK---------EEEVA 1253

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL--INHPAILQ 499
                       +   +    P   ++++   +         +  A++  +   + P  + 
Sbjct: 1254 RLKNALEDLASDHVDQKTGEPDTAVLKALQQEISTKDDEIQKLTAVIAAMPHAHEPQDIT 1313

Query: 500  EQYQEL----ADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLKQL 553
            +  + +    +++  + +    L   L S   +        + + + L        ++ L
Sbjct: 1314 DAAELMRILESNLEKEKDGTAALRDALHSAEEKNNEQLREIDALRRELDALRRAAAVEPL 1373

Query: 554  DRQVRDAGLWS----ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ---VT 606
                           A  E  + DV    Q   AL ++        E+++  + +     
Sbjct: 1374 ATPAPVDDDLLRSLRADNEMLMEDVHDKRQDIKALERKLLQAKDVIEDLKDALVRVEPAE 1433

Query: 607  AKGEAEKTAILISILHEVHIQIHQIESQ 634
                A+  A  I  L ++   + Q E +
Sbjct: 1434 LTAIADGGAEDIGRLQDLLENMKQREKE 1461



 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/268 (10%), Positives = 78/268 (29%), Gaps = 24/268 (8%)

Query: 382  VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441
                     E  ++   + R        + +  I D  L+   +Q          ++ + 
Sbjct: 1520 YRDAIGFLKEELAYKDHEIRRMRADSAPSEVAQIVDASLKQALAQK---------EEEVA 1570

Query: 442  EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL--INHPAILQ 499
                       +   +    P   ++++   +         +  A++  +   + P  + 
Sbjct: 1571 RLKNALEDLASDHVDQKTGEPDTAVLKALQQEISTKDDEIQKLTAVIAAMPHAHEPQDIT 1630

Query: 500  EQYQEL----ADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLKQL 553
            +  + +    +++  + +    L   L S   +        + + + L        ++ L
Sbjct: 1631 DAAELMRILESNLEKEKDGTAALRDALHSAEEKNNEQLREIDALRRELDALRRAAAVEPL 1690

Query: 554  DRQVRDAGLWS----ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ---VT 606
                           A  E  + DV    Q   AL ++        E+++  + +     
Sbjct: 1691 ATPAPVDDDLLRSLRADNEMLMEDVHDKRQDIKALERKLLQAKDVIEDLKDALVRVEPAE 1750

Query: 607  AKGEAEKTAILISILHEVHIQIHQIESQ 634
                A+  A  I  L ++   + Q E +
Sbjct: 1751 LTAIADGGAEDIGRLQDLLENMKQREKE 1778


>gi|301628660|ref|XP_002943468.1| PREDICTED: plectin-1, partial [Xenopus (Silurana) tropicalis]
          Length = 4391

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 79/259 (30%), Gaps = 8/259 (3%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY- 446
            RE   R+     ++   +   +     +KD+ L+   ++    R  Q  +    E     
Sbjct: 1291 RELRARAEEAERQKRLAQEEAERLRKQVKDETLKKREAEEELQRKVQAERDAAREKQKAM 1350

Query: 447  --GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                 ++  A   +++       +   +K          +A L    ++      +    
Sbjct: 1351 DDLEKFRLLAEEAERRMKQAEFEKERQIKQAQDVAQQSADAELQSKRMSFLEKTTQLEMS 1410

Query: 505  LADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
            L         LQ+    L    +E +      E+  ++  ++    L  +L  +      
Sbjct: 1411 LKQEHITVTHLQEEAERLKKQQLEAEKAREDAEKELEKWRQKANEALRLRLQAEEVAHKK 1470

Query: 563  WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI--AQVTAKGEAEKTAILISI 620
              A  EA         ++     K      RQKE  E ++   +  A+  A+        
Sbjct: 1471 TVAQEEAEKQK-EDAERETRKRTKAEEFALRQKELAEAELDKQRKLAEDTAQHKFSAEQE 1529

Query: 621  LHEVHIQIHQIESQEAMIE 639
            L  +  ++   E    ++E
Sbjct: 1530 LIRLKAEMENGEQHRIVLE 1548



 Score = 37.9 bits (86), Expect = 4.7,   Method: Composition-based stats.
 Identities = 30/289 (10%), Positives = 82/289 (28%), Gaps = 29/289 (10%)

Query: 362  FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE-RAELEIHLKNCINHIKDQKL 420
              R   ++A +KL  E+     M  + E              +     +      +++  
Sbjct: 1882 QTRIQEQSALDKLKEEAERAKRMAEEAERARTRAEHEAALSRQQAEEAERLKQKAEEEAQ 1941

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                +Q   +++++       E     R   + A  + ++     + +      K  ++ 
Sbjct: 1942 AKAQAQEEAEKIRK-----EAELEAAMRGQAEQAALKQKQLADAEMEKHKKFAEKTLRQK 1996

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
               E  L    +          Q        ++EL +L   +     ++K    E    +
Sbjct: 1997 EQVEGELTKVRLQ-------LEQTDHQKTILDDELGRLKEEVTDSLRQKKLVEEELFKVK 2049

Query: 541  LCERGFGELLKQLDRQ----------------VRDAGLWSATTEANIVDVRQGYQQALAL 584
            +      +L  +++++                  +A       E       +  + A   
Sbjct: 2050 IQMEELIKLKIRIEQENKMLISKDKDNTQKFLAEEAEKMKQVAEEAARLSIEAQEAARLR 2109

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                  LS Q+   EK + +     +        + L +   ++   ++
Sbjct: 2110 KLAEDELSEQRALAEKMLKEKMQAVQEATRLKAEAELLQKQKELAVEQA 2158



 Score = 37.9 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 31/301 (10%), Positives = 88/301 (29%), Gaps = 38/301 (12%)

Query: 368  KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
             +  ++L      L  M  + E +   F+  +        +      ++    R      
Sbjct: 1039 PSDLKELESNKSELKRMRGQVEGQQPLFSNLENDLSKAKEVSE--RMLRSHNERDVDLDR 1096

Query: 428  IRDRLQQLFQK-------------YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474
             R+R+QQL ++              + +     RY++++     Q     +  Q  +   
Sbjct: 1097 YRERVQQLLERWQAIVLQIDIRQRELEQLGKQLRYYRESYEWLIQWITEAKKRQEKIQSV 1156

Query: 475  KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD------FVE 528
             ++   ++RE      L+    +L+E  +    +       ++    +         +  
Sbjct: 1157 PITDSRTVREQ-----LLQEKKLLEESEKNREKVDECQKYAKQYIDAIKDFELHLVTYKA 1211

Query: 529  QKYFLPEEIH--------QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ- 579
            Q       I           + +    +L +  + +++         E N   V +  + 
Sbjct: 1212 QVEPAASPIKKPKVQSASDNIIQEELQQLKQNSEMEIKTKAKLIEEAEINRTKVEEEIRI 1271

Query: 580  ---QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               Q     K+      +  E+  +  +   +    +              + + E++E 
Sbjct: 1272 IRLQLETSQKQKSGAENELRELRARAEEAERQKRLAQEEAERLRKQVKDETLKKREAEEE 1331

Query: 637  M 637
            +
Sbjct: 1332 L 1332


>gi|266625383|ref|ZP_06118318.1| putative toprim domain protein [Clostridium hathewayi DSM 13479]
 gi|288862712|gb|EFC95010.1| putative toprim domain protein [Clostridium hathewayi DSM 13479]
          Length = 330

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 37/135 (27%), Gaps = 17/135 (12%)

Query: 68  HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----------------VVDPKIEKKE 111
              GD + FL    G  F  SV  L   AG                      + + E +E
Sbjct: 54  GHNGDTIEFLKQFCGMDFRGSVIYLLNEAGYRYEDKEFESDTYRKRHECRKAEQETEPEE 113

Query: 112 KIQTDLIRLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLR 170
           K +  L    +     + + LK     K +  +  ++ +         + +     +   
Sbjct: 114 KGEFVLPEANDNYRRLYAYLLKTRCLSKAVVDWFVKKKLIYETRRYHNVVFIGRDSFGTA 173

Query: 171 EHLRQKGFSEEKIIE 185
                +G  +     
Sbjct: 174 RFASMRGTVDNYGKP 188


>gi|195564978|ref|XP_002106084.1| GD16316 [Drosophila simulans]
 gi|194203455|gb|EDX17031.1| GD16316 [Drosophila simulans]
          Length = 2741

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 54/140 (38%), Gaps = 6/140 (4%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ---LD 554
           L ++ + +  +     ELQ+  +    +  + +     E    L  +    L  +   L 
Sbjct: 251 LAKRAELIERLELSGAELQRTLTQRNEELEQLRVVQAGE--DSLKVQENSRLQGEVLVLR 308

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            ++ +    +   E    ++++    A    +R   L +++E+  +      A  +A+ +
Sbjct: 309 ERLTELENVNDLLETTRCELQEELTTA-RERQRNLELEQEQEKASRSPQSEAASTDAQVS 367

Query: 615 AILISILHEVHIQIHQIESQ 634
           A L   L E+  Q+  +++ 
Sbjct: 368 AELAKQLQELTNQLADLQAT 387


>gi|281357726|ref|ZP_06244212.1| hypothetical protein Vvad_PD0725 [Victivallis vadensis ATCC
           BAA-548]
 gi|281315673|gb|EFA99700.1| hypothetical protein Vvad_PD0725 [Victivallis vadensis ATCC
           BAA-548]
          Length = 371

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 15/142 (10%)

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--------ERGFGELLKQLDRQVRDAGLW 563
           N +  +L   +     E++    E   Q              F E + +L++++ +    
Sbjct: 208 NRKNGELAGQIDRLGEERRQRDAEAKKQAAELAVLLDKSRADFKESVSRLNQELSEQRRV 267

Query: 564 SA--TTEANIVDVRQGYQQALALY-----KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                 +       +    A+ L      K+ + L R   E EK++     K  + K   
Sbjct: 268 FETQLKKLEADAASRAEADAIRLREEFARKQQQELRRIAAEHEKELKAAVEKAGSAKQDE 327

Query: 617 LISILHEVHIQIHQIESQEAMI 638
                 E+  +  ++E   A I
Sbjct: 328 AEKARLELERRRGELEQLRARI 349


>gi|149489365|ref|XP_001508973.1| PREDICTED: similar to coiled-coil domain containing 88, partial
           [Ornithorhynchus anatinus]
          Length = 1035

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/281 (8%), Positives = 77/281 (27%), Gaps = 19/281 (6%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
              A  +      P          +        +  E E   +   +   +   +   S+
Sbjct: 326 EPEAGRQDAESQEPEGRRQEAESRQLEGRQRESQSTESEARRQEAESLEPEASRQEAESR 385

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            +  ++Q+   +            +   R ++ +       +          +    +  
Sbjct: 386 ELEAKMQEAEPQEPEGRRQEAESQELEGRKQEAESREPEGRRWETGSQGPEGRARAEQR- 444

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
               L+      +   +            Q+L         +++    +E   +  E+  
Sbjct: 445 ----LVREAGAWEGVREARG---------QQLKEKAPKGEEDKQAGAEQEGEAQNGEQKC 491

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            E   +      +  +     E    ++    ++  AL +      R++E ++       
Sbjct: 492 SEPTAEGRGGEAEREVLKVEVELLKRELEALERERAALRREVEAGERRQEALKG-----E 546

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647
            +   E+       L  +  ++  ++ ++  ++G  +  GR
Sbjct: 547 REALREEQGAQARKLEALERELEALKGEQKALQGELEAQGR 587



 Score = 37.2 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 49/138 (35%), Gaps = 3/138 (2%)

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           + +       ++     E + L   L +   E++ +  E +  R       E L+ L+R+
Sbjct: 627 LREALEAAGRELEAAGREREALGEALGATGRERRQWEREGLRLRTRAEQAEEKLQALERE 686

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
            R+    +         +R+  + ALA   + + L  Q EE+++ + +     E      
Sbjct: 687 GRERREEAERERRESQALREELRGALA---QGQELQAQLEELQRTLQRDNQGQEQRLQEQ 743

Query: 617 LISILHEVHIQIHQIESQ 634
                        +++ +
Sbjct: 744 EDRHHRACEALEQRLKGE 761


>gi|133903945|ref|NP_494819.3| abnormal DYe Filling family member (dyf-14) [Caenorhabditis
           elegans]
          Length = 1955

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 39/352 (11%), Positives = 104/352 (29%), Gaps = 38/352 (10%)

Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390
           A      +             +    +D          +  E  +       +     + 
Sbjct: 282 ATLMRKAIRHAEQKNLDQKEQMKREKDDVLDETLRQLNSVTENYMKSEEKANERQRDLKR 341

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKL----RYYYSQAIRDRLQQLFQKYITEHSGY 446
           +        E+ +    +   ++ +  +      R      +  ++++L      E    
Sbjct: 342 KEDECRKLREQNDELSDILEQLSKMAHEMAGGRGRNETPMDVARKMRKLLTTKNGEIDES 401

Query: 447 GRYWKKNARHRDQKGP-----SQRLMQSSLVKGKLSKKPSLREAALLLT---------LI 492
               K+  + RD+         +R       + K S   S RE  L             I
Sbjct: 402 REAAKQAEKERDRAKKDLEKEEKRRKDDREAERKRSSVYSQREHDLKKLDDELRKASEKI 461

Query: 493 NHPAILQEQYQELA-----DIRYDNNELQKLWSFLF----SDFVEQKYFLPEEIHQRLCE 543
            +    +E  ++L       +   + + ++    L      +  E++    E +  +  E
Sbjct: 462 RNLEEQRESQEKLTISVQNSLNEAHRQHKQFIEELMIRHREELKEREDSHEEALRSKDTE 521

Query: 544 RG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
               F +   + ++  R++     T  +   DV            R  +L  +++E++K+
Sbjct: 522 ERSRFEKERSEREKIRRESDELRETQRSLKGDVAAMKTDLDDKTLRLDMLETERDELKKK 581

Query: 602 IAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
           +     + +           K   +     E+  ++ + ++    +EG GK+
Sbjct: 582 LETEREQADQRDLEIAECRAKLDEMAEKEAELRKELAEFQAIITAMEGEGKL 633


>gi|154422273|ref|XP_001584149.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121918394|gb|EAY23163.1| hypothetical protein TVAG_184000 [Trichomonas vaginalis G3]
          Length = 730

 Score = 38.7 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/115 (6%), Positives = 39/115 (33%), Gaps = 1/115 (0%)

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            + +  +       +   + + +    +      +      +      A    + +   Q
Sbjct: 96  KILAYTLSLVSDYKDRKIEAIEKEAHDQTEDLKIQLDTREKIAQQEKSAINGRITELVSQ 155

Query: 581 ALALYKRFRLLSRQKEEIEK-QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
              + ++   L  +  E++   I +   K    +   L+  + +++++I  ++++
Sbjct: 156 NFQIVQQNEALKAKISELQAYTIKEDEYKAVLSEKQALMQEIQKMNLEIEALKNE 210


>gi|332362903|gb|EGJ40696.1| DNA repair protein RecN [Streptococcus sanguinis SK49]
          Length = 552

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 84/244 (34%), Gaps = 38/244 (15%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ----KGPSQRLMQSSLVKGKLSKKPSL 482
            ++ R Q+ F +Y +         K    H+ +    +     +  ++L  G+ +     
Sbjct: 156 YLKGRYQETFDRYRSLRKQVLTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQE 215

Query: 483 REAAL-----------LLTLINHPAI-----LQEQYQELADIRYDNNELQKLWSFLFS-- 524
           R+  L             T++++        ++    +L  I   +   ++L   L    
Sbjct: 216 RDRLLNHKLIADTLTNAYTMLDNEDFSSLTNVRSAMNDLESIEDYDPAYKELSGNLSETY 275

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
             +E      E+I   L   G   L  Q++ ++      +      + DV   + Q    
Sbjct: 276 YVLEDVSKRLEDILDGLDFDGDRLL--QVESRLDLINSITRKYGGQVDDVLDYFAQISKE 333

Query: 585 Y--------------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           Y              +  + L R+  E+ ++++Q      A+  A +   L +++++  +
Sbjct: 334 YSLLTGSNLSSEDMDRELKALERELVELAQELSQARHGLAAQLEAEIKQELQDLYMEKAR 393

Query: 631 IESQ 634
            + Q
Sbjct: 394 FKVQ 397


>gi|332223879|ref|XP_003261095.1| PREDICTED: oral-facial-digital syndrome 1 protein isoform 1
           [Nomascus leucogenys]
          Length = 1012

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 88/227 (38%), Gaps = 17/227 (7%)

Query: 418 QKLRYYYSQAIRDRLQ-QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +     Y + I ++L+ ++ QK            K  A+ + +K  +             
Sbjct: 197 EIKLNEYKREIEEQLRAEMCQKLKFFKDTEVAKIKTEAKKKYEKELAMFQNDFEKACQAK 256

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           S+   LRE + L  +  H  I  E  +  A  +    ++  L      +   ++     E
Sbjct: 257 SEALVLREKSTLERIQKHQEI--ETKEIYAQRQLLLKDMDLLRG---REAELKQRVEAFE 311

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----QALALYKRFRLL 591
           ++Q+L E     + + L R+ ++   +  T +  + +    YQ       +    R    
Sbjct: 312 LNQKLQEEKHKSITEALRRREQNIKSFEETYDRKLKNELLKYQLELKDDYIIRTNRLIED 371

Query: 592 SRQKEE----IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            R+ +E    +++++  + +K   E+    ++ + E+ +++  +++Q
Sbjct: 372 ERKNKEKAVHLQEELIAINSK--KEELNQSVNRVKELELELESVKAQ 416


>gi|328858322|gb|EGG07435.1| hypothetical protein MELLADRAFT_85806 [Melampsora larici-populina
           98AG31]
          Length = 483

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 76/216 (35%), Gaps = 16/216 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            +  + R++ L ++   +H       +    + + K   +   +   +K   S     ++
Sbjct: 209 LRQAKRRIESLLEELGEKHQEQTPRLETQRSNENFKTRREEEERLRNMKHDPSLLCIKQD 268

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            +L   LI     L++     +     +   Q            Q +  P  +  R  +R
Sbjct: 269 ESL--GLIQRLDNLEKHLTSFSSQS-TSPHHQP-----------QHHQDPTHLKGRWRKR 314

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
           G  E  +        + L    T+            +L+   R   ++++ +EI   +  
Sbjct: 315 GGKEEGEGSFGSSVGSSLPIWVTDPRSQASNASVTGSLSKSNRIGNMTKEMQEILG-LKV 373

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           +  + + ++  + I    E+  +I ++++   M+EG
Sbjct: 374 LLNQSDDDRVKVEI-ENRELKQEIEELKNTNRMLEG 408


>gi|327461657|gb|EGF07988.1| DNA repair protein RecN [Streptococcus sanguinis SK1]
          Length = 552

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 84/243 (34%), Gaps = 38/243 (15%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ----KGPSQRLMQSSLVKGKLSKKPSLR 483
           ++ R Q+ F +Y +         K    H+ +    +     +  ++L  G+ +     R
Sbjct: 157 LKGRYQETFDRYRSLRKQVLTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQER 216

Query: 484 EAAL-----------LLTLINHPAI-----LQEQYQELADIRYDNNELQKLWSFLFS--D 525
           +  L             T++++        ++    +L  I   +   ++L   L     
Sbjct: 217 DRLLNHKLIADTLTNAYTMLDNEDFSSLSNVRSAMNDLESIEDYDPAYKELSGSLSETYY 276

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +E      E+I   L   G   L  Q++ ++      +      + DV   + Q    Y
Sbjct: 277 VLEDVSKRLEDILDGLDFDGDRLL--QVESRLDLINSITRKYGGQVDDVLDYFAQISKEY 334

Query: 586 --------------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                         +  + L R+  E+ ++++Q      A+  A +   L +++++  + 
Sbjct: 335 SLLTGSNLSSEDMDRELKALERELVELAQELSQARHGLAAQLEAEIKQELQDLYMEKARF 394

Query: 632 ESQ 634
           + Q
Sbjct: 395 KVQ 397


>gi|324502800|gb|ADY41229.1| ELKS/Rab6-interacting/CAST family member 1 [Ascaris suum]
          Length = 905

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 92/293 (31%), Gaps = 17/293 (5%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRET--ENRSFNTPDERAELEIHLKNCINHIKDQKL 420
           +R +G  A      +S+   ++   R     +                +      ++  L
Sbjct: 379 LRAHGVDAPRNFTDKSVTSHELHTLRMKMERSEMELAQKTSELAAAQTRLQAATEENADL 438

Query: 421 RYYY---------SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
           R +           +     LQ   +    +        ++  +  ++      L +  L
Sbjct: 439 RKHLGVLRDSTSAKEQHATLLQSDIEALRAKLETKNGQIEQKEKLCERLESELTLTRGQL 498

Query: 472 VKGKLSKKP-SLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFLFSDFV 527
              + + K    R + L+  L    ++L+E+ QEL   +       ++Q           
Sbjct: 499 ADLRETNKSCEQRMSQLVARLDALESVLREKEQELEKTKQKLLAQPDVQMERHMQLQIDE 558

Query: 528 EQKYFLPEE-IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             +     + +   L      E  +QL+         +AT E+   ++        +  +
Sbjct: 559 ANREKTRLQCLIDDLRRNAEKEKTQQLETFQEQNRQLTATIESLQKELSDRQILLESQNE 618

Query: 587 RFRLLSRQKEEIEKQIAQVTA-KGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           +   L R+    E+Q  +  + +   E+ A     +  +   +  +E +++ +
Sbjct: 619 KIGDLDRELCSAERQRKEQPSQQTNDEQVAEARKEIESLLRMVQTLEKEKSSL 671



 Score = 37.6 bits (85), Expect = 7.0,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 68/183 (37%), Gaps = 10/183 (5%)

Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW-SF 521
           S  L +   ++ + S K +  +  +    I+ P     +  EL     +N++ + +    
Sbjct: 234 SPELKRERQLRKEESAKVAALQRQISHGNISGPCASDFRIAELEG-ELENSQFELMKKDE 292

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGE--LLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
                VE++         RL + G      L +L+ +        A  +  +    Q   
Sbjct: 293 TIRRLVERQAVTAGTSAARLVDGGGAAGSRLAELETRCNQLESLVAIRDQQLRSFEQQLT 352

Query: 580 QA-LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-----ILISILHEVHIQIHQIES 633
           QA     +R     R+  ++E+++A++ A G           +    LH + +++ + E 
Sbjct: 353 QAPFTSSQRDSAKDRRIADLEEELARLRAHGVDAPRNFTDKSVTSHELHTLRMKMERSEM 412

Query: 634 QEA 636
           + A
Sbjct: 413 ELA 415


>gi|312218534|emb|CBX98480.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1141

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 48/143 (33%), Gaps = 17/143 (11%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            E+ +L         E      +    R  E    ++  +L+    +        + +  
Sbjct: 256 EEMDELRKLADERAAEIDKLEDKVEEARNAEAELEKVSAELEEAQAEVSKRDRLLDEHDD 315

Query: 573 DVRQGYQQALALYKRFRLLS---RQKEEIEKQIAQVTAK---------GEAEKTAILISI 620
            + +  ++  A   R   L    R+  +  ++IA++ A+          +      L++ 
Sbjct: 316 RIEELEKELEAQSSRSAGLEEKEREIADQAERIAELDAQLQSLRQAQRNDLADKERLLAE 375

Query: 621 ----LHEVHIQIHQIESQ-EAMI 638
               + ++  Q+  ++   EA I
Sbjct: 376 QNDKIKDLEDQLRSLQRSKEAKI 398



 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 83/282 (29%), Gaps = 13/282 (4%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
                    +    +        +    ++E         + R+ +           K  
Sbjct: 638 VSKIANKDEQVEVLRRGNNDRDTLVATLRQERNEIEIEMRNLRSAVSGKDTQIEALQKVT 697

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL--MQSSLVKGKL 476
           + R   S+ + +    L  +     S   +   + A  ++ K     L      L   + 
Sbjct: 698 RERDALSRDLSNLQSSLQSRERDVQSLQKKIESQEATLQELKQLKNDLGNRTRELETARQ 757

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           +      E   L    + P    +    L      +++L+ L   L +   + +      
Sbjct: 758 TISDRDAELEALRDHADEPDTQIDVMHSLVRK--RDDDLENLREELNAQRGQVEELQRLA 815

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
             +        +  ++      +   + A  E    D  +  ++  +L ++  LL     
Sbjct: 816 EERLEALEELRDEARR------EKEDYEAEIEVLQEDADEVAEEKASLEEKIILLESMIR 869

Query: 597 EIEKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           E E Q   +   +   + E+ A L   +  +  ++ + +SQ+
Sbjct: 870 EKENQAGALQSESRAAQREQKAALEEKIRGLESKLREKDSQQ 911


>gi|301757687|ref|XP_002914698.1| PREDICTED: Golgin subfamily A member 4-like [Ailuropoda melanoleuca]
          Length = 2229

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 73/212 (34%), Gaps = 8/212 (3%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            + L   F+K        G+     A     +  S+  +    +   +  + +  E  L  
Sbjct: 1874 EELTSKFEKLQALQQMDGKNKPTEALEESAEKKSKSHVVQPKLPTNMEAEHNDLEFKLAG 1933

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC---ERGF 546
                   + +E  +   D+R    E Q+    +  ++ ++     ++  + L        
Sbjct: 1934 AEQEKQKLGKEIVKLQKDLRMLRKEHQQELDIMKKEYEQEMEEKIKQEQEDLELKHNSTL 1993

Query: 547  GELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQ 604
             +L+++   Q+         T +  I   ++   + L  ++     L R+  E E  + +
Sbjct: 1994 KQLMREFHTQLAQKEQELEMTIKETIDKAQEVEAELLESHQEETNQLYRKIAEKEDDLQR 2053

Query: 605  VTAKGEA---EKTAILISILHEVHIQIHQIES 633
               + E     +   + + + ++  Q+  +++
Sbjct: 2054 TAKRYEEILDAREEEMTAKVTDLQTQLEGLQN 2085


>gi|224067054|ref|XP_002189877.1| PREDICTED: transcription elongation regulator 1 [Taeniopygia
           guttata]
          Length = 951

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 34/360 (9%), Positives = 105/360 (29%), Gaps = 39/360 (10%)

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           +     R+ +      +  +D  D  +  A     +       G      L+    D   
Sbjct: 409 VWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEPPHKKGLEEGKKLIREEHDAAE 468

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
                     +K   + +  +D   +   E       +               +  ++  
Sbjct: 469 EANEDEPIKIKKRKKDDIKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGV 528

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             +S   ++  + +F       +   R    +   + +    ++  ++ +++ K   K  
Sbjct: 529 SAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERKEKKNKIMQAKEDFKKM 588

Query: 482 LREAALLLTLINHP-----AILQEQ-----YQELADIRYDNNELQKLWSFLFSDFVEQKY 531
           + EA +      +P         +      ++ +  +     + + L++   +   +++ 
Sbjct: 589 MEEAKI------NPRTTFSEFAAKHAKDSRFKAIEKM----KDREALFNEFITAARKKEK 638

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----------VDVRQGYQQ 580
              +   +++    F  L                  E +             D+ + Y +
Sbjct: 639 EDSKTRGEKIKMDFFELLANHHLDSQSRWSKVKDKVETDPRYKAVDSSSQREDLFKQYIE 698

Query: 581 ALALYK---RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            +A      + + L RQ   IE  + +   + +  ++        E+  +  Q + +EA+
Sbjct: 699 KIAKNLDSEKEKELERQ-ARIEASLREREREVQKARSEQT----KEIDREREQHKREEAI 753


>gi|217967792|ref|YP_002353298.1| preprotein translocase, SecA subunit [Dictyoglomus turgidum DSM
           6724]
 gi|217336891|gb|ACK42684.1| preprotein translocase, SecA subunit [Dictyoglomus turgidum DSM
           6724]
          Length = 787

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 66/192 (34%), Gaps = 29/192 (15%)

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD--- 525
            +L++    ++    E+ LL  +I +         ++  + +      ++   L      
Sbjct: 554 KALMERLGMERGQPIESPLLTRIIENSQA------KVERMNF------EIRKQLLEYDDV 601

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL--- 582
              Q+  + +E  + L      E+++++  +V D        + N    +  + +     
Sbjct: 602 LNTQRDIVYKERRKILLMDNLEEIVQRIMNRVLDKFFTIMFNQENRESWKNMFLETFGFL 661

Query: 583 ----ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV-------HIQIHQI 631
                   +    +  +E++E +I +   K + E    +   +  +        + I  +
Sbjct: 662 PFDWEEIIKEEDYTEVREKLEGRIRERYEKRKEEFGEEMWKEIQRIVLLYVIDKLWIEHL 721

Query: 632 ESQEAMIEGFGK 643
              EA+ +G G 
Sbjct: 722 NDMEALRDGIGL 733


>gi|158285914|ref|XP_308526.4| AGAP007295-PA [Anopheles gambiae str. PEST]
 gi|157020218|gb|EAA03955.5| AGAP007295-PA [Anopheles gambiae str. PEST]
          Length = 835

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 76/230 (33%), Gaps = 20/230 (8%)

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
           +      IKD+  +         ++     +   E  G      K  +    +   ++  
Sbjct: 152 MVEEEKKIKDEIKQAL------SKIGDDDSEEDEEEKGKVGGLLKERKKTAAETEKEQSD 205

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
               +  K +KKP   EA +L  L +         ++L+           L  ++ +   
Sbjct: 206 YIQWLADKKAKKPPSEEAKVLEPLKHF-----WNNEKLSKED------AFLKDYILNKRF 254

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN-IVDVRQGYQQALALYK 586
            Q         + +      E L + +   R         +A+ I    +  + ++ + +
Sbjct: 255 VQSSGEVPTYDEIVATSEDEEELDKQEDYERQYNFRFEEPDADYIKQFPRTVEDSVRVER 314

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             R    Q++E++++  +   +   E   +    L E+  +I +++   A
Sbjct: 315 NKR--KEQRQELKERKQKEKEQQRRELEELKAIKLKEIREKIQRLKEIAA 362


>gi|114587516|ref|XP_001173848.1| PREDICTED: sarcolemmal membrane-associated protein isoform 2 [Pan
           troglodytes]
          Length = 790

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 86/263 (32%), Gaps = 9/263 (3%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
           K+       +    + E +       +   + +           D         A++++L
Sbjct: 322 KVAEGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDFTNERLTALQEKL 381

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
             + + ++T+     +  K+N     +   S  L  S       +    + E  L   L 
Sbjct: 382 --IVEGHLTKAVEETKLSKENQTRAKESDFSDTLSPSKEKSSDDTTDAQMDEQDLNEPLA 439

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV-----EQKYFLPEEIHQRLCERGFG 547
               +  +     ++I     E+Q L   L          +QK F  + + +    + + 
Sbjct: 440 KVSLLKDDLQGAQSEIE-AKQEIQHLRKELIEAQELARTSKQKCFELQALLEE-ERKAYR 497

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             +++  +Q++           +I ++R+     +   +   L +R +  +  Q A+  A
Sbjct: 498 NQVEESTKQIQVLQAQLQRLHIDIENLREEKDSEITSTRDELLSARDEILLLHQAAEKVA 557

Query: 608 KGEAEKTAILISILHEVHIQIHQ 630
                  A L   L +V  ++ +
Sbjct: 558 SERDTDIASLQEELKKVRAELER 580


>gi|28277305|gb|AAH45233.1| Vim4 protein [Xenopus laevis]
          Length = 463

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 509 RYDNNELQKLWSFLFSDFVEQK--YFLPEEI---HQRLCERGFGELLKQLDRQVRDAGLW 563
                E++++   L     E+       + +    QRL E+   E++++ + +       
Sbjct: 142 DLYEEEMREIRRQLDQAINEKARVEVDRDNLGDDLQRLREKLQDEMIQREEAEGNLQSFR 201

Query: 564 SATTEANIVDVR-----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-IL 617
                A++  +      +  Q+ +   K+      +  E++ QI +   + + + +   L
Sbjct: 202 QDVDNASLARIDLERKVESLQEEIVFLKKLH--DEEIRELQLQIQESHIQVDMDVSKPDL 259

Query: 618 ISILHEVHIQ 627
            + L +V  Q
Sbjct: 260 TAALRDVRQQ 269


>gi|1850913|gb|AAB48065.1| myosin heavy chain [Entamoeba histolytica]
          Length = 2139

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 49/137 (35%), Gaps = 4/137 (2%)

Query: 507  DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            +I+  + ++  L   L    V+           +  +      ++  + +++        
Sbjct: 1566 EIKIRDAQIADLNKALEMKGVQNNQLQATNKELKAKDNDLTSKIEITENEMKKLENAKKR 1625

Query: 567  TEANIVDVRQGYQQALALYK----RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
             E +  +  +   +     K      + L+ + + ++ QI   ++  + E+   L S + 
Sbjct: 1626 LEQDKDEADKAVSEQTIKRKGLEEEVKKLTTEIQALKFQINAPSSVAQEEEKQRLESDIA 1685

Query: 623  EVHIQIHQIESQEAMIE 639
            E+  Q+ Q  +  A  E
Sbjct: 1686 ELKEQLEQERTTAANAE 1702



 Score = 38.3 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/247 (9%), Positives = 72/247 (29%), Gaps = 16/247 (6%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
             E  +    +    +           +D +        +R +  +  +K           
Sbjct: 1493 LEELNKTVEEHDEVVAKLNTQITKLTRDNQSAEEELNELRSKADKDKKKISELEEQVNEL 1552

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
              +     +      ++  + +     + +    +   L     +  +  +     + I 
Sbjct: 1553 ESRPVGTGNADENEIKIRDAQIADLNKALEMKGVQNNQLQA--TNKELKAKDNDLTSKIE 1610

Query: 510  YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               NE++KL +       ++         Q +  +G  E +K+L  +++          +
Sbjct: 1611 ITENEMKKLENAKKRLEQDKDEADKAVSEQTIKRKGLEEEVKKLTTEIQALKFQINAPSS 1670

Query: 570  NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA--QVTAKGEAEKTAILISILHEVHIQ 627
               +  +              L     E+++Q+   + TA     +   + + L EV   
Sbjct: 1671 VAQEEEKQ------------RLESDIAELKEQLEQERTTAANAEAERKKIQAELDEVKFN 1718

Query: 628  IHQIESQ 634
            +  + +Q
Sbjct: 1719 LEDVTNQ 1725


>gi|50510551|dbj|BAD32261.1| mKIAA0619 protein [Mus musculus]
          Length = 777

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 98/288 (34%), Gaps = 39/288 (13%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD---- 430
           + E     +     E +        E  +        +  ++DQ     Y   +      
Sbjct: 211 MSEKQIKQENNHLMEMKMNLEKQNTELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 270

Query: 431 ----------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478
                     +L +  Q+   +                 K  S++L +S   +    L K
Sbjct: 271 ELKEENEEKTKLCKELQQKKQDLQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 330

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +  ++E  +   +  H   L E+   +A +       + L S + +   E      EE++
Sbjct: 331 EKIMKELEIKEMMARHKQELTEKDTTIASLE---ETNRTLTSDVANLANE-----KEELN 382

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593
            +L +    E L +L  +   A    A  E  +++ R    QA+     +  R   + R 
Sbjct: 383 NKLKDS--QEQLSKLKDEEMSAAAIKAQFEKQLLNERTLKTQAVNKLAEIMNRKEPVKRG 440

Query: 594 -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                +++E E +   +  K E EK   L   + +   +++++++Q A
Sbjct: 441 SDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 485


>gi|18676600|dbj|BAB84952.1| FLJ00198 protein [Homo sapiens]
          Length = 677

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 87/270 (32%), Gaps = 23/270 (8%)

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL------RYYYSQAIRDRLQQL 435
            D   +    + ++  P +++E  + ++     I  + L      +    + +   L++ 
Sbjct: 145 HDQRLEGTVRDPAWQKPQQKSEGALEVQVWEGPIPGESLASGVAEQEALREEVAQ-LRRK 203

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +    E     R  +       +        + +  +     +    E A         
Sbjct: 204 AEALGDELEAQARKLEAQNTEAARLSKELAQARRAEAEAHREAEAQAWEQA--------- 254

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +       ++   + E + L   L +   E++ +  E    R       E ++ L+ 
Sbjct: 255 RLREAVEAAGQELESASQEREALVEALAAAGRERRQWEREGSRLRAQSEAAEERMQVLES 314

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQAL----ALYKRFRLLSRQKEEIEKQIAQV--TAKG 609
           + R     +         ++   ++A+     L  R   L R+ E+   +  +     + 
Sbjct: 315 EGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEHLQRELEQAALERQEFLREKES 374

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + ++   L   L E  +Q      +EA++E
Sbjct: 375 QHQRYQGLEQRL-EAELQAAATSKEEALME 403


>gi|126463145|ref|YP_001044259.1| hypothetical protein Rsph17029_2385 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104809|gb|ABN77487.1| conserved hypothetical protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 834

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 69/228 (30%), Gaps = 21/228 (9%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            + L+ +               +        +    R  Q         +     E A L
Sbjct: 402 AEPLKVVLPGRRFFDPLAAALIEMRRDLLWNRTNGPRTAQILHAVTHAPEGLFRNERAFL 461

Query: 489 LTLINHPAI-----------LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            T +    +             E  ++L +I     E   L S L +    Q        
Sbjct: 462 RTRVLMRRLDAEAATLAPAARDEIAEQLWEIALMVEE-GDLASALEALRRAQDRLDEA-- 518

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              +      + ++QL +++R A       E      R   QQ     +   +   Q +E
Sbjct: 519 ---IRNGASQDEIEQLMQEMRQALDNYMR-ELAEEAQRNPDQQQSENRQTMEMSGDQLQE 574

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645
           +  ++ ++  +G   + A L+ ++ ++   +  ++      +G G  S
Sbjct: 575 MLDKLQELMEQGRMAEAAELMEMMRQL---MENMQVTMGEGQGQGPGS 619


>gi|291227807|ref|XP_002733874.1| PREDICTED: protein phosphatase 1, regulatory subunit 7-like
           [Saccoglossus kowalevskii]
          Length = 916

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 80/248 (32%), Gaps = 11/248 (4%)

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
             L    +      K           + ++L+       ++            +   +K 
Sbjct: 485 QALVREREEKNRLEKLVSELEERVSKLTEKLESSQDSEESQRKALRAMETTATKIESEKI 544

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-HPAILQEQYQELADIRYDN--NELQKL 518
                 +      ++    + RE  LL  ++  H   +Q+  + LA    D+  + L   
Sbjct: 545 EQLAHERKKTQDYQMKAVAASREVDLLRNMVKKHEGKIQQLQELLASREQDHRVDVLTHQ 604

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
           ++ L  +F            +   +  F ++ ++  +  +         +     V +  
Sbjct: 605 YADLEDEFRLALQIEANRFKE--VQEAFEKVSEESAQHKQAMVTLHDKEQKCSALVTELT 662

Query: 579 QQALALYKRFRLLSR----QKEEIEKQIAQVTAKGEAEKTAILISI-LHEVHIQIH-QIE 632
                   R   LSR       E ++++  V A  +  +  ++    L +   ++  QI 
Sbjct: 663 SMVKEQKGRLSELSRSKQEALAEAKERLQTVEAHLDEARRRMVQMEMLKQEKTKLQAQIT 722

Query: 633 SQEAMIEG 640
           +QE++IEG
Sbjct: 723 AQESLIEG 730


>gi|226958601|ref|NP_084311.1| golgi autoantigen, golgin subfamily b, macrogolgin 1 [Mus musculus]
          Length = 3238

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 77/244 (31%), Gaps = 15/244 (6%)

Query: 413  NHIKDQKLRYYY--SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
              IK+++L       Q     L++  Q+ + E +      +K    + Q        +S 
Sbjct: 1935 AQIKNEQLESEMRNLQRCVSELEEEKQQLVKEKTKVESEIRKEYMEKIQGAQKGPANKSH 1994

Query: 471  LVKGKLSKKPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQK--------LWSF 521
              + +   +   +E   L    I +   +    + +  + + + E QK        L   
Sbjct: 1995 AKELQELLREKQQEVKQLQKDCIRYLERISALEKTVKALEFVHTESQKDLDVTKGNLAQA 2054

Query: 522  LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR----QVRDAGLWSATTEANIVDVRQG 577
            +      Q      +I     +     +L    +       +     +  +    D+ + 
Sbjct: 2055 VEHRKKAQAELSSFKILLDDTQSEAARVLADNLKLKKELQSNKESIKSQIKQKDEDLLRR 2114

Query: 578  YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
             +QA   +++ +   ++K +   +      +  AE    L     E+      ++S  A 
Sbjct: 2115 LEQAEEKHRKEKKNMQEKLDALHREKAHVEETLAEIQVSLTRKDQEMKELQGSLDSTLAQ 2174

Query: 638  IEGF 641
            +  F
Sbjct: 2175 LAAF 2178


>gi|260827150|ref|XP_002608528.1| hypothetical protein BRAFLDRAFT_126624 [Branchiostoma floridae]
 gi|229293879|gb|EEN64538.1| hypothetical protein BRAFLDRAFT_126624 [Branchiostoma floridae]
          Length = 572

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 7/59 (11%), Positives = 24/59 (40%)

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +  +Q    +Y     +  Q  + ++Q+ +     +     +L   + E+  Q+ ++ +
Sbjct: 507 KSNWQNIQDMYFELTNIRNQLSDAQEQLREAYDNNDYAAARVLAERIRELQQQLQEVYN 565


>gi|195126407|ref|XP_002007662.1| GI13065 [Drosophila mojavensis]
 gi|193919271|gb|EDW18138.1| GI13065 [Drosophila mojavensis]
          Length = 1839

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 76/240 (31%), Gaps = 28/240 (11%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    Q +  +L+++ +++  +     +     A +       +R  +    K    ++ 
Sbjct: 798  RADQLQELVSKLERMLERFNEQSLSPMKGHSGGAGNSAVGDMLERQNEKLEDKLAAVREQ 857

Query: 481  SLREAALLLTLINHPAILQEQYQE-LAD-------IRYDNNELQKLWSFLFSDFVEQKYF 532
             + E     T       +++Q +E LA+       +      ++K  +       +QK  
Sbjct: 858  MIVERQAARTANLSLWKVEKQLEEALAEKKLLARRMELTEERVKKAQNERDEAQRKQKST 917

Query: 533  LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI----VDVRQGYQQALALYKRF 588
              E   +          L    R V          E        ++ +       L ++ 
Sbjct: 918  QDEFRQRDARIDELKAELAASKRDVLKEHRMWEKAEEERMKCKSEIIEHLANIHRLEQQV 977

Query: 589  RLLSRQK--------------EEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIE 632
            R + ++               + +++++ +   +  A  E T  L + L ++     +++
Sbjct: 978  REVRQKLNQSQQRCDGLGLEQKRLQRELQEERERNAAAGENTQALQAELKQLTDNFQRLK 1037



 Score = 37.9 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 48/430 (11%), Positives = 111/430 (25%), Gaps = 43/430 (10%)

Query: 250  NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309
                    L +   +  R      +    G +   SL         +             
Sbjct: 721  QLSLTKKELAEVQTECNRLERELQLAECRGNLAETSLASQTSPYETAPGSLTELHAIEDQ 780

Query: 310  LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369
            L      +V   D +      A +  +LV         +      +   P   ++ +   
Sbjct: 781  LRA---DLVAAKDAESAQKTRADQLQELVSKLER----MLERFNEQSLSP---MKGHSGG 830

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
            A    + + L   +   + +          ER        +     K  +      + + 
Sbjct: 831  AGNSAVGDMLERQNEKLEDKLAAVREQMIVERQAARTANLSLWKVEKQLEEALAEKKLLA 890

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-AALL 488
             R++   ++     +      +K    +D+       +     +   SK+  L+E     
Sbjct: 891  RRMELTEERVKKAQNERDEAQRKQKSTQDEFRQRDARIDELKAELAASKRDVLKEHRMWE 950

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFL-----------FSDFVEQKYFLPEEI 537
                       E  + LA+I     +++++   L                 Q+    E  
Sbjct: 951  KAEEERMKCKSEIIEHLANIHRLEQQVREVRQKLNQSQQRCDGLGLEQKRLQRELQEERE 1010

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLW--------------SATTEANIVDVRQGYQQALA 583
                       L  +L +   +                      EA     +    Q  A
Sbjct: 1011 RNAAAGENTQALQAELKQLTDNFQRLKYACSITDNQLTEVENMLEAEQKRNKTQQAQLDA 1070

Query: 584  LYKRFRLLSRQKEEIEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQIE-----SQEA 636
             + + R  + Q  ++ K +   +   +   +   IL   L E+   + Q++      Q  
Sbjct: 1071 CHVKLRERNDQVTQLRKDLNVQESEKRQAEQHAKILSVELEELKENLKQLQMKLISQQSQ 1130

Query: 637  MIEGFGKMSG 646
            ++E    + G
Sbjct: 1131 LVEQTNALFG 1140


>gi|187957182|gb|AAI57947.1| Coiled-coil domain containing 88B [Mus musculus]
          Length = 1481

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
               + ++ L+ QVR     +    A    +R+  ++A+    R + L  + E +++++ 
Sbjct: 845 EAAEQQVQALESQVRCHLEEAEREHAEKQALREELEKAV---LRGQELGDRLEHLQEELE 901

Query: 604 QVTAKGEA--EKTAILISILHEVHIQIH-QIES-----QEAMIE 639
           Q   + +   ++          +  ++  ++++     +EA++E
Sbjct: 902 QAALERQKFLQEQENQHQRYRHLEQRLEAELQAASTSKEEALME 945


>gi|148665530|gb|EDK97946.1| mCG141708, isoform CRA_a [Mus musculus]
          Length = 3176

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 77/244 (31%), Gaps = 15/244 (6%)

Query: 413  NHIKDQKLRYYY--SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
              IK+++L       Q     L++  Q+ + E +      +K    + Q        +S 
Sbjct: 1894 AQIKNEQLESEMRNLQRCVSELEEEKQQLVKEKTKVESEIRKEYMEKIQGAQKGPANKSH 1953

Query: 471  LVKGKLSKKPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQK--------LWSF 521
              + +   +   +E   L    I +   +    + +  + + + E QK        L   
Sbjct: 1954 AKELQELLREKQQEVKQLQKDCIRYLERISALEKTVKALEFVHTESQKDLDVTKGNLAQA 2013

Query: 522  LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR----QVRDAGLWSATTEANIVDVRQG 577
            +      Q      +I     +     +L    +       +     +  +    D+ + 
Sbjct: 2014 VEHRKKAQAELSSFKILLDDTQSEAARVLADNLKLKKELQSNKESIKSQIKQKDEDLLRR 2073

Query: 578  YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
             +QA   +++ +   ++K +   +      +  AE    L     E+      ++S  A 
Sbjct: 2074 LEQAEEKHRKEKKNMQEKLDALHREKAHVEETLAEIQVSLTRKDQEMKELQGSLDSTLAQ 2133

Query: 638  IEGF 641
            +  F
Sbjct: 2134 LAAF 2137


>gi|148342499|gb|ABQ59035.1| MYH7 protein [Homo sapiens]
          Length = 1934

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1565 NQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1624

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1625 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1684

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1685 EELRAVVEQTERSRKLVEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1744

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1745 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1804

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1805 KGGKKQLQKLEARVRELENELEAEQKRNA 1833


>gi|124486839|ref|NP_001074760.1| coiled-coil domain-containing protein 88B [Mus musculus]
 gi|167006539|sp|Q4QRL3|CC88B_MOUSE RecName: Full=Coiled-coil domain-containing protein 88B; AltName:
           Full=Hook-related protein 3; Short=HkRP3
 gi|187956433|gb|AAI51010.1| Coiled-coil domain containing 88B [Mus musculus]
 gi|223462325|gb|AAI51002.1| Coiled-coil domain containing 88B [Mus musculus]
          Length = 1481

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
               + ++ L+ QVR     +    A    +R+  ++A+    R + L  + E +++++ 
Sbjct: 845 EAAEQQVQALESQVRCHLEEAEREHAEKQALREELEKAV---LRGQELGDRLEHLQEELE 901

Query: 604 QVTAKGEA--EKTAILISILHEVHIQIH-QIES-----QEAMIE 639
           Q   + +   ++          +  ++  ++++     +EA++E
Sbjct: 902 QAALERQKFLQEQENQHQRYRHLEQRLEAELQAASTSKEEALME 945


>gi|12045072|ref|NP_072883.1| HMW2 cytadherence accessory protein [Mycoplasma genitalium G37]
 gi|1351513|sp|P47460|HMW2_MYCGE RecName: Full=Cytadherence high molecular weight protein 2;
           AltName: Full=Cytadherence accessory protein 2
 gi|3844818|gb|AAC71437.1| HMW2 cytadherence accessory protein [Mycoplasma genitalium G37]
 gi|166079063|gb|ABY79681.1| HMW2 cytadherence accessory protein [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 1805

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 83/275 (30%), Gaps = 12/275 (4%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +   K        + L      ++ E E +     + +  LE       +  KD   +  
Sbjct: 504 KQDQKENELLFFEKQLKQHQADFENELEAKQQELFEAKHALERSFIKLEDKEKDLNTK-- 561

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
            +Q I +   QL                +    + +K    +          +      +
Sbjct: 562 -AQQIANEFSQLKTDKSKSADFELMLQNEYENLQQEKQKLFQERTYFERNAAVLSNRLQQ 620

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           +      L+     L +  +     R  N   Q+    L +   +QK  L +++      
Sbjct: 621 KRE---ELLQQKETLDQLTKSFEQERLIN---QREHKELVASVEKQKEILGKKLQDFSQT 674

Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                  L ++            AT +  + DV         L +  + L++++ E++  
Sbjct: 675 SLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQLNQSLNQERSELQNA 734

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
             ++ A    +    L      +  ++ ++++ EA
Sbjct: 735 KQRI-ADFHNDSLKKLNEYELSLQKRLQELQTLEA 768


>gi|297792757|ref|XP_002864263.1| hypothetical protein ARALYDRAFT_357610 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310098|gb|EFH40522.1| hypothetical protein ARALYDRAFT_357610 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 691

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 5/99 (5%)

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI----- 598
                + +QL  + R         E    ++        A + +  +L  Q +E+     
Sbjct: 138 NASARMQEQLHEKERSIREAERKLEEKDRELHAIKLDNEAAWAKEGILREQNKELASFRR 197

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           E+  ++       +K + L   + E   Q+ +++ Q  +
Sbjct: 198 ERDHSEAERSKNIQKISELQEHIQEKESQLSELQEQNRI 236


>gi|296208443|ref|XP_002751115.1| PREDICTED: guanylate-binding protein 4-like [Callithrix jacchus]
          Length = 669

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 74/245 (30%), Gaps = 37/245 (15%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKK------NARHRDQKGPSQRLMQSSLVKGK 475
            +YSQ +  R++            +    ++          +D+    Q  +  ++ K K
Sbjct: 375 DHYSQQMAQRVRFPTDTLQELLDVHAACEREAIAVFMEHSFKDENQEFQGKLVDTIEKKK 434

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP- 534
                   EA++         + +   + +    +       L+        +    +P 
Sbjct: 435 EDFVLQNEEASVKYCQAELKRLSEHLTESILRGIFSVPGGHNLYLEEKKQVEQNYKLVPC 494

Query: 535 ------EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                 + +   L  +   E          ++ L S              +      ++ 
Sbjct: 495 KGVKADKVLWDFLQSQVVIE----------ESILKSDRALTAGEKAIAAERSMREAAEKE 544

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE------------VHIQIHQIESQEA 636
           + L RQK+E ++QI +   +   E  A L   +              +  ++   E +E 
Sbjct: 545 QELLRQKQEEQQQIMEAQQRSFQENIAQLEKKMERERENLRREHERMLEHKLK--EQEEM 602

Query: 637 MIEGF 641
           +IEGF
Sbjct: 603 LIEGF 607


>gi|294636098|ref|ZP_06714527.1| phage shock protein A [Edwardsiella tarda ATCC 23685]
 gi|291090595|gb|EFE23156.1| phage shock protein A [Edwardsiella tarda ATCC 23685]
          Length = 234

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 65/190 (34%), Gaps = 7/190 (3%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                 + +      +    +     R  +   + ++ +  ++  ++        +    
Sbjct: 47  QEMEDTLVEVRSTSARALAEKKQLLRRIEQATQQCQEWQEKAELALRKEKDDLARAALIE 106

Query: 482 LREAALLLTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            +  A LL  + H        L+   +E++++     E +     L     +Q      E
Sbjct: 107 KQRVADLLVSLQHEVESVDETLERMKREISELESKLTETRARQQAL--TLRQQAAASSRE 164

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + ++L      E + + ++  R      A  E+  +  ++  +Q  A  K    +SRQ  
Sbjct: 165 VRRQLDSGKLDEAMARFEQFERRIDHMEAEAESVALGKKKSLEQEFAELKADDEISRQLA 224

Query: 597 EIEKQIAQVT 606
           E++ ++ +  
Sbjct: 225 EMKARLQRGE 234


>gi|297737876|emb|CBI27077.3| unnamed protein product [Vitis vinifera]
          Length = 969

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 56/159 (35%), Gaps = 28/159 (17%)

Query: 492 INHPAILQEQYQELA--------DIRYDNNELQKLWSFLFSDFV-EQKYFLPEEIHQRLC 542
           I    IL E    L+          ++D     KL   L   +  +++     E+ ++L 
Sbjct: 94  IEDEEILPEFEDLLSGEIDIPLPSDKFDTETAAKLEGELLEYYGLKEQETDIAELQRQLK 153

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                  +K ++  + +  + S   E     ++      ++  K   +   + +E+++QI
Sbjct: 154 -------IKTVEIDMLNITISSLQAE--RKKLQDEVALGVSARKELEVARNKIKELQRQI 204

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE--SQEAMIE 639
                     +       L  +  Q+  ++   QEA+ +
Sbjct: 205 QV--------EANQTKGHLLLLKQQVSGLQTKEQEAIKK 235


>gi|187956399|gb|AAI50732.1| Golgb1 protein [Mus musculus]
          Length = 3238

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 77/244 (31%), Gaps = 15/244 (6%)

Query: 413  NHIKDQKLRYYY--SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
              IK+++L       Q     L++  Q+ + E +      +K    + Q        +S 
Sbjct: 1935 AQIKNEQLESEMRNLQRCVSELEEEKQQLVKEKTKVESEIRKEYMEKIQGAQKGPANKSH 1994

Query: 471  LVKGKLSKKPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQK--------LWSF 521
              + +   +   +E   L    I +   +    + +  + + + E QK        L   
Sbjct: 1995 AKELQELLREKQQEVKQLQKDCIRYLERISALEKTVKALEFVHTESQKDLDVTKGNLAQA 2054

Query: 522  LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR----QVRDAGLWSATTEANIVDVRQG 577
            +      Q      +I     +     +L    +       +     +  +    D+ + 
Sbjct: 2055 VEHRKKAQAELSSFKILLDDTQSEAARVLADNLKLKKELQSNKESIKSQIKQKDEDLLRR 2114

Query: 578  YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
             +QA   +++ +   ++K +   +      +  AE    L     E+      ++S  A 
Sbjct: 2115 LEQAEEKHRKEKKNMQEKLDALHREKAHVEETLAEIQVSLTRKDQEMKELQGSLDSTLAQ 2174

Query: 638  IEGF 641
            +  F
Sbjct: 2175 LAAF 2178


>gi|170671932|ref|NP_001116260.1| TAO kinase 1 [Xenopus (Silurana) tropicalis]
 gi|170284541|gb|AAI61101.1| LOC733788 protein [Xenopus (Silurana) tropicalis]
          Length = 1001

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 56/158 (35%), Gaps = 25/158 (15%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              + + L + L     + ++   + + +RL E    +L    ++         +T    
Sbjct: 733 QTRQYKALRNHLLETTPKNEH---KAVLKRLKEEQTRKLAILAEQYDHSINEMLSTQALR 789

Query: 571 IVDVRQGYQQALALYKRFRLL-----------------SRQKEEIEKQI---AQVTAKGE 610
           + + ++   Q L +  +  L                   R+  ++E+++     +  +  
Sbjct: 790 LDEAQEAECQVLKMQLQQELELLNAYQSKIKMQAEAQHDREIRDLEQRVSLRRALLEQKI 849

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            E+   L +   E    + + +++E  IE F   S RL
Sbjct: 850 EEEMLALQNERTERIRSLLERQARE--IEAFDSESMRL 885


>gi|170067757|ref|XP_001868608.1| chromosome-associated kinesin KIF4A [Culex quinquefasciatus]
 gi|167863828|gb|EDS27211.1| chromosome-associated kinesin KIF4A [Culex quinquefasciatus]
          Length = 1177

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 76/227 (33%), Gaps = 25/227 (11%)

Query: 430 DRLQQLFQKYITEH--SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
            RL  + Q+   E   +  G+    ++ +R    P +  +  S  +  +S   + RE  L
Sbjct: 357 RRLNAIIQELRLELLTATAGKENVGDSANRPSTVPGKPGIVRSSTESHISVDSARREREL 416

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
              +      LQ   Q++A  +      +K+   + +   E      ++  + + +    
Sbjct: 417 QDKIRTLQQQLQLALQDMATDQLQTLTAEKIVEEIEALLSESPESELKQGVRAILDGYKA 476

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ--- 604
           E      R           ++          ++ + + +  R L+++  EI++++ +   
Sbjct: 477 ETAS--IRCESAISDNLLKSDDFQDRSDLHTKKQMDIREELRKLTKEL-EIKEELHRRCM 533

Query: 605 -----------------VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                                G  EK     + + E+  Q+ ++  Q
Sbjct: 534 GNMSNMTFTVEDTSDGSGAGTGGNEKLVEYQNKIAELEKQLQELNGQ 580


>gi|114626407|ref|XP_001159151.1| PREDICTED: centrosomal protein 110kDa isoform 1 [Pan troglodytes]
          Length = 2101

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/299 (10%), Positives = 79/299 (26%), Gaps = 29/299 (9%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK----DQ 418
           +R +     +    E           E  +       +        K     I+     +
Sbjct: 429 LRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISE 488

Query: 419 KLRYYYSQAIRDRLQ-------QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
             +    + +  RLQ       +     +           K    +D +     L     
Sbjct: 489 AGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDP 548

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
               +  +   +E  L +    +  +     + L+ I  +  E++ L   L    +    
Sbjct: 549 KHSHMKAQKRGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANE 608

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-------DVRQGYQQALAL 584
            L +++   +   G  E L  +  Q   A                   +V Q   Q   +
Sbjct: 609 ALKKDLEGVIS--GLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIV 666

Query: 585 YKRFRLLSRQKEEIEKQIAQVTA--------KGEAEKTAILISILHEVH-IQIHQIESQ 634
                 + ++  E+E  + +           +G+       +     +   + +Q++ +
Sbjct: 667 AMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEE 725


>gi|194335009|ref|YP_002016869.1| hypothetical protein Paes_2220 [Prosthecochloris aestuarii DSM 271]
 gi|194312827|gb|ACF47222.1| conserved hypothetical protein [Prosthecochloris aestuarii DSM 271]
          Length = 420

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 74/246 (30%), Gaps = 8/246 (3%)

Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
            +ERA     L      I   K +      + D  ++  +K   + +   +  ++ +   
Sbjct: 47  QEERARSTEELALKEREITSLKHQLEAIGTVSDNQREFEEKLREQQTSIQQLERQKSSLE 106

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
           +     ++     + + +  +  +L E   L   +      +E     + +       QK
Sbjct: 107 EAFTAFRKERDMEIKRYQADQVKALAERTSLDASLR--DARKELDLSKSGLAAKTEAWQK 164

Query: 518 LWSFL---FSDFVEQKYFLPEEIHQRLC-ERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
               L          +    + I      ++ F  L ++L +             A I  
Sbjct: 165 ERDALKLAVKQCQTARQNDEQVIAAYKQKDQAFAVLHEKLRQSNPVFRDTPPEPTAVIKV 224

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
                 +  A       L  +  E  +Q+    A     +   LI++  E++ ++   + 
Sbjct: 225 FAALLSECRAKLDSVDELEDRLRE--EQLKTTEADKLDSRIGELIALNREINEELESRDE 282

Query: 634 QEAMIE 639
               +E
Sbjct: 283 TMKSME 288


>gi|332842065|ref|XP_001150786.2| PREDICTED: myosin-7 [Pan troglodytes]
          Length = 1740

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1371 NQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1430

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1431 EIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1490

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1491 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1550

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1551 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1610

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1611 KGGKKQLQKLEARVRELENELEAEQKRNA 1639


>gi|332824397|ref|XP_003311408.1| PREDICTED: filamin-A-interacting protein 1 [Pan troglodytes]
          Length = 1216

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 102/365 (27%), Gaps = 24/365 (6%)

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           +   DV+ + +              +    ++L  L    +L  +             +L
Sbjct: 95  QAREDVIHMLKTEKTKPEVLEAHYGSAEPEKVLRVLHRDAILAQEKSIGEDVYEKPISEL 154

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRETENR 393
                        +L                   E    +    +    D     E E  
Sbjct: 155 DRLEEKQKETYRRMLEQLLL--AEKCHRRTVYELENEKHKHTDYMNKSDDFTNLLEQERE 212

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                 E+ +     K   N  +  KLR    +     L  + ++ +       +  K  
Sbjct: 213 RLKKLLEQEKAYQARKEKENAKRLNKLRDELVKLKSFALMLVDERQMHIEQLGLQSQKVQ 272

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQELADIRYD 511
              +  +   ++L   +    +  +K    E         H A    QE  +  A +   
Sbjct: 273 DLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDF-----EHKASRFSQEHEEMNAKLANQ 327

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR-QVRDAGLWSATTEAN 570
            +  ++L   L       +       + +  E    EL  ++ + +  ++ L      A 
Sbjct: 328 ESHNRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLM-----AE 382

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           + ++R+   +     +       Q  E+ K++ +         +  L   + ++  ++ +
Sbjct: 383 VENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHH-----SKELRLEVEKLQKRMSE 437

Query: 631 IESQE 635
           +E  E
Sbjct: 438 LEKLE 442


>gi|330937434|ref|XP_003305582.1| hypothetical protein PTT_18476 [Pyrenophora teres f. teres 0-1]
 gi|311317324|gb|EFQ86327.1| hypothetical protein PTT_18476 [Pyrenophora teres f. teres 0-1]
          Length = 631

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
              +  D  E++  L +E+ +RL +       +Q   +V ++ L  A TE   ++ R   
Sbjct: 67  ADAVDEDAREEQSALLQELKERLQKAEAAAEERQKQVEVLNSRLDDALTEQAKLEERAH- 125

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                  ++   L  +K+E+ +Q  ++    EAE+    +    E+  +   ++  
Sbjct: 126 ----EEEEKVEALENEKKELTRQHRELEGIYEAERAQA-MKEKEEIQSREEDMQGT 176


>gi|301771626|ref|XP_002921228.1| PREDICTED: LOW QUALITY PROTEIN: myosin-2-like [Ailuropoda
            melanoleuca]
          Length = 1943

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/272 (10%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1569 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHVRVVESMQTMLDAEIRSRNDAIRLKKKMEG 1628

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       K     +     +Q  +  +L       +  L+E   L  
Sbjct: 1629 DLNEMEIQLNHANRMAAEALKNYRNTQAILKDTQIHLDDAL-----RGQEDLKEQ--LAM 1681

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1682 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1741

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1742 ISQMQAEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1801

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1802 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1833


>gi|301614741|ref|XP_002936847.1| PREDICTED: alpha-internexin-like [Xenopus (Silurana) tropicalis]
          Length = 440

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 91/311 (29%), Gaps = 21/311 (6%)

Query: 326 PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDML 385
             +   YK I       + G    F +               +    +  + +L      
Sbjct: 97  SAVNNEYKIIRTNEKEQLQGLNDRFAMFIE-----KVHNLEQQNKVLETELTALRQRQSE 151

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
             R  E       + RA+LE         I ++       Q ++ + +   +        
Sbjct: 152 PSRLGELYQQEIKELRAQLEELNAEKAQIIIERDNLEDDLQKLKGKYEDEIRMREETEYA 211

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505
              + K        +   ++ ++S L +    +K    E   L+ ++    +  E     
Sbjct: 212 LKSHKKDVDDATLARLDLEKKVESLLDEISFLRKVHDEEVTELMAMLQASQVSVE----- 266

Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
             +     +L      + S +        +   +    +               A   + 
Sbjct: 267 --MELSKPDLTSALKEIRSQYESLAAKNLQSADEWYKSK--------FANLTEQASRSTE 316

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
              AN  ++    +Q  +       L    E +E+Q+ ++  +  AE TA L   ++++ 
Sbjct: 317 LIRANREEINDYRRQLQSKTIEIESLRGTNESLERQLQEMEDRHMAE-TAGLQDTINQLE 375

Query: 626 IQIHQIESQEA 636
            ++   + + A
Sbjct: 376 NELRNTKGEMA 386


>gi|226480028|emb|CAX73310.1| Intraflagellar transport 74 homolog [Schistosoma japonicum]
          Length = 581

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 48/139 (34%), Gaps = 21/139 (15%)

Query: 515 LQKLWSFLFSDFVEQK------YFLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSA 565
           L+ L + L +   E +           E+ + L      +   +L     +V++      
Sbjct: 217 LKDLNAHLLNQLSEGQIELEELKVRKAELEEELSTSAIKQEAVRLFSQLHEVQNRRDQLL 276

Query: 566 TTEANIVDVRQGYQQAL-----------ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           + E ++ D ++  Q+ L           A+ K+   +  +    E+++  +  + +    
Sbjct: 277 SEENSVEDPQKERQRLLQQVKNDNQEIAAIEKQKHAIQEKIASKEEELRILEQELDENHQ 336

Query: 615 AILISILHEVHIQIHQIES 633
                   E+  +  QI+ 
Sbjct: 337 ERN-QKYRELKKREQQIDE 354


>gi|198459513|ref|XP_001361405.2| GA15267 [Drosophila pseudoobscura pseudoobscura]
 gi|198136716|gb|EAL25983.2| GA15267 [Drosophila pseudoobscura pseudoobscura]
          Length = 1809

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 98/342 (28%), Gaps = 21/342 (6%)

Query: 303  TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
                 +  W    +     + +          +   +        V  +      + +  
Sbjct: 1020 ENGHSQEEWLSQKKSYCLENEELRKQVDQMIEMAKNVEATQHDQNVRMLAEIDNNELNEA 1079

Query: 363  IRCYGKTA----------FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
             +   K             E+L       V  L  R   N S    ++           I
Sbjct: 1080 YQRAIKDKEVIENENYQLKEELSRLQQNGVYSLRGRSASNASSQNEEDVGYGSAKNTLDI 1139

Query: 413  NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
            N   D + + Y S      + +L      E   +    ++  +   +  P++   + S +
Sbjct: 1140 NRTSDLQSKNYTSADCTSLVVKLRSILEAEKLKHKVLQEQYIKLASRNKPTEDSFRVSEL 1199

Query: 473  KGKLSKKPSLREAALLLTLINH----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528
            + +  K  S  E   L T I H      +  +      ++R   +E  +L + L      
Sbjct: 1200 EVENDKLRSEHEQ--LRTSIKHGVEINELNAQYAALQEEVRRRRDECIQLKAVLLQQNQT 1257

Query: 529  QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
             + F PE +   L      ELL+    Q           +A   +      +     +R 
Sbjct: 1258 LRSFEPESM--HLRGNDVNELLEAFQSQKLVNRQLEDELKAITEEHNSKLVEMTQEIER- 1314

Query: 589  RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
              L  +++E++K I +     E      L      +  ++ +
Sbjct: 1315 --LHNEQDELQKVIFESIDASEDANVETLKQNDRFLRRELQK 1354


>gi|195340913|ref|XP_002037057.1| GM12709 [Drosophila sechellia]
 gi|194131173|gb|EDW53216.1| GM12709 [Drosophila sechellia]
          Length = 2778

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 54/140 (38%), Gaps = 6/140 (4%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ---LD 554
           L ++ + +  +     ELQ+  +    +  + +     E    L  +    L  +   L 
Sbjct: 251 LAKRAELIERLELSGAELQRTLTQRNEELEQLRVVQAGE--DSLKVQENSRLQGEVLVLR 308

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            ++ +    +   E    ++++    A    +R   L +++E+  +      A  +A+ +
Sbjct: 309 ERLTELENVNDLLETTRCELQEELTTA-RERQRNLELEQEQEKASRSPQSEAASTDAQVS 367

Query: 615 AILISILHEVHIQIHQIESQ 634
           A L   L E+  Q+  +++ 
Sbjct: 368 AELAKQLQELTNQLADLQAT 387


>gi|119619674|gb|EAW99268.1| golgin-like protein, isoform CRA_e [Homo sapiens]
          Length = 736

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 90/287 (31%), Gaps = 27/287 (9%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +   +   +    K   +         +R          +  +     + + +  ++D+ 
Sbjct: 245 ERMWKMSVEARTLKEEKKRDIHRIQELERSLSELKNQMAEPPSLAPPAVTSVVEQLQDEA 304

Query: 420 LRYYYSQAIRDRLQQLFQKY--ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              +  Q +     +L  +       S   +  K+  + +++    Q   +    +    
Sbjct: 305 --KHLRQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQEAQRVREQERLCE 362

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           +   LRE             LQEQ + L          Q+L         E++    +E 
Sbjct: 363 QNERLREQQ---------KTLQEQGERLRKQE------QRLRKQEERLRKEEERLQKQEK 407

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALALYKRFRLLSRQKE 596
                E    +  ++L +Q     L      +  + + +  ++      K    L +Q +
Sbjct: 408 RLWDQEERLWKKEERLQKQEERLALSQNHKLDKQLAEPQCSFEDLNNEKKSALQLEQQVK 467

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI-------HQIESQEA 636
           E+++++ +V           L S    +H Q+        Q++ QEA
Sbjct: 468 ELQEKLDEVKEMQYMATYQQLTSEKEALHRQLLLQTQFVDQLQQQEA 514


>gi|113013930|gb|ABI29893.1| neurofilament subunit NF-L [Petromyzon marinus]
          Length = 474

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/290 (9%), Positives = 79/290 (27%), Gaps = 23/290 (7%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
               +      + L  ++  +    E         +      L      ++   ++  Y 
Sbjct: 87  NELKSIRTQEKDQLQDLNDRFAGFIERVHHLEQQNKVLEAEALILRQKEMRPSNIKQLYE 146

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           Q IRD      +     +S  G   +        +       +          +      
Sbjct: 147 QEIRDLRALAEECKSEYNSAKGGRDQMEGALGALRAKHDEERRRREESEGALDEVRKAAD 206

Query: 486 ALLLTLINHPAILQEQYQELADIRY----DNNELQKLWSFL-FSDFVEQKYFLPEEIHQR 540
                 +   A+ Q+    L +I +       E+  L + +  +    +      ++   
Sbjct: 207 E---AAVQRVALEQKVGSLLDEIAFLKKVQQEEIADLQAQIQSAHITVEMSVARPDLTSA 263

Query: 541 LCE--RGFGELLKQLDRQVR------------DAGLWSATTEANIVDVRQGYQQALALYK 586
           L +    +  L  +  +               +A   +        +V +  +       
Sbjct: 264 LRDIRAQYEVLAAKNMQSAEEWFKTKFTVLSENANRNTEAVHVAREEVSEYRRHVQNKTL 323

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
               +    E +EKQI  +  + + E    L  ++ E+  ++   +++ +
Sbjct: 324 ESEAIKDMIESLEKQIQDLDERHQKE-LEPLQELIPELEKELQSTKNEMS 372


>gi|17862830|gb|AAL39892.1| LP08646p [Drosophila melanogaster]
          Length = 1132

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 35/226 (15%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           L+ L ++    ++   +  +K          + R  + +  +    K     E   L   
Sbjct: 563 LRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQT 622

Query: 492 INHPAILQEQYQE--------LADIRY---DNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +    +  E  +E        L ++ +      E  +L           +     E   +
Sbjct: 623 LADTRLDLEFKEEKLASLQRELEEMTFGGGTEEEFAQLR----------RSKNETERRAK 672

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LLSRQKEEIE 599
             E    E+  Q+    +       T E    + R+  QQ     +  R    ++ + +E
Sbjct: 673 EQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALE 732

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE--------SQEAM 637
            Q+     + E E+  +L+   HE+  ++  +E        ++EA+
Sbjct: 733 CQL-----ETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEAL 773



 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 23/284 (8%), Positives = 76/284 (26%), Gaps = 21/284 (7%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE--IHLKNCINHIKDQ 418
             +R   +   ++   E   +    +K+          +                 +   
Sbjct: 700 ETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSM 759

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
           + R    +   + L Q  ++ + ++    +  +          P + L++   ++ +L  
Sbjct: 760 EDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIR--QLRNQLED 817

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             S R        +      +   +        +   +        +     +    E+ 
Sbjct: 818 AESAR-----SLAMKARQTAE--AELTEVQAMFDESHRATNDA--EERANAAHRDRAELQ 868

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            ++ E             ++             ++V +   +   +      L  Q  E+
Sbjct: 869 AQIEENEEEL-----GELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAEL 923

Query: 599 EKQIAQVTAKGEAEKTA---ILISILHEVHIQIHQIESQEAMIE 639
           + ++  V   G+         L     E+  ++   ++  A +E
Sbjct: 924 QHRLDNVENLGDPSMAMMSKRLELRTKELESRLELEQATRARLE 967


>gi|6752407|gb|AAF27714.1|AF071818_1 PspA [Streptococcus pneumoniae]
          Length = 429

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 92/281 (32%), Gaps = 15/281 (5%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             + A      ++    D   K+ +E    +  + + + E   K      K    +    
Sbjct: 30  RAEEAPVASQSKAEKDYDAAVKK-SEAAKKHYEEVKKKAEDAQKKYDEGQKKTVEKAKRE 88

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           +   +++ +  ++    +  Y +   ++ R    K   +   +    +   +   +    
Sbjct: 89  KEASEKIAEATKEVQQAYLAYQQASNESQRKEADKKIKEATQRKDEAEAAFATIRTT--- 145

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNN------ELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                ++  P+ L E  ++  + + +        +   L   L    VE K    E++  
Sbjct: 146 ----IVVPEPSELAETKKKAEEAKAEEKVAKRKYDYATLKVALAKKEVEAKELEIEKLQY 201

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-ALALYKRFRLLSRQKEEI 598
            +          Q         L  A  +     +     +    L  +   L++++ E+
Sbjct: 202 EISTLEQEVATAQHQVDNLKKLLAGADPDDGTEVIEAKLNKGEAELNAKQAELAKKQTEL 261

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           EK +  +  +G+ +      +   E+  +  +++++ A +E
Sbjct: 262 EKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLE 302



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L ++       +  L++++ +  +      A+ 
Sbjct: 260 ELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLEKEISNLEI--LLGGADS 317

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            D     Q  LA   +   L + ++E++  + ++   G+ E+T
Sbjct: 318 EDDTAALQNKLA--TKKAELEKTQKELDAALNELGPDGDEEET 358


>gi|86748191|ref|YP_484687.1| chromosome segregation protein SMC [Rhodopseudomonas palustris
           HaA2]
 gi|86571219|gb|ABD05776.1| condensin subunit Smc [Rhodopseudomonas palustris HaA2]
          Length = 1154

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 67/215 (31%), Gaps = 20/215 (9%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + + +R ++  +    +                     QRL+ +  +  +   +   R 
Sbjct: 255 VRELAERTREQAEAARIQADRASTLPGLREAEARAAAGLQRLINARELLDREEARAKERV 314

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQK----LWSFLFSDFVEQKYFLPEEIHQR 540
             L   L    + ++ + Q+  D       LQ     L   +     ++           
Sbjct: 315 VELERRLAQFSSDVEREQQQAIDADAALERLQAEDIELREEILERVEKRGGVDERVGLAE 374

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLSRQKEEIE 599
                   L  +L  Q+                 R  ++QA+  ++ R   L  +   ++
Sbjct: 375 EALGEAERLFAELTTQLAQLTAR-----------RNQFEQAVRSHRDRLGRLDTEIRNVD 423

Query: 600 KQIAQVTAK----GEAEKTAILISILHEVHIQIHQ 630
            +I ++TA+    G  ++ A  +++  E   ++  
Sbjct: 424 SEIERLTAETSGAGNVDELAEAVAMAQETLAELEA 458


>gi|9759201|dbj|BAB09738.1| unnamed protein product [Arabidopsis thaliana]
          Length = 720

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 80/272 (29%), Gaps = 40/272 (14%)

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI----RD 430
              SL   D   +  + +   N            +     + D  ++   ++        
Sbjct: 16  TSSSLSRCDSGIEVSSVSFFTNGDRRFERSYNSWRFPSESVADGSVKKRVARRFGFTRHH 75

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           RL     + +  +    R   +N R +D    S+ L Q  L   +   +    E  L   
Sbjct: 76  RLCGNDLEQLKLNRTDERTIYENGREQDGYSNSEMLQQQILNVSRKKGELQQLEIELRAQ 135

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           +I       E  +  ++      E     + +     E              ER   E  
Sbjct: 136 MI----ARHEIMEIQSNYESQFTEYANAAARMQEQLHEN-------------ERSIREAE 178

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI-----EKQIAQV 605
           ++L+ + R+        EA               + +  +L  Q +E+     E+  ++ 
Sbjct: 179 RKLEEKDRELHAIKLDNEAA--------------WAKEGILREQNKELATFRRERDHSEA 224

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
                  K + L   + E   Q+ +++ Q  +
Sbjct: 225 ERSQNIHKISELQEHIQEKESQLSELQEQNRI 256


>gi|33594427|ref|NP_882071.1| putative chromosome partition protein [Bordetella pertussis Tohama
           I]
 gi|28375457|emb|CAD66592.1| SMC protein [Bordetella pertussis]
 gi|33564502|emb|CAE43817.1| putative chromosome partition protein [Bordetella pertussis Tohama
           I]
 gi|332383838|gb|AEE68685.1| putative chromosome partition protein [Bordetella pertussis CS]
          Length = 1175

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGY----QQALALYKRFRLLSRQKEEIEKQIAQV 605
           L  ++ +VRDA        A +  V Q      Q      ++ + L +++E +++++ ++
Sbjct: 370 LPAIEARVRDAAAGRDDMRAALARVEQNLALVAQTQRDADRQLQTLEQRRERLQQELREL 429

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
               + E+   L         Q+   +++ A +EG
Sbjct: 430 -HTPDPERLEQLAGDRLAGEDQLEAAQAELATLEG 463


>gi|7486519|pir||T05892 hypothetical protein F6H11.110 - Arabidopsis thaliana
 gi|2827709|emb|CAA16682.1| predicted protein [Arabidopsis thaliana]
          Length = 1421

 Score = 38.7 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 74/212 (34%), Gaps = 11/212 (5%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL---REAA 486
           + +    ++   E     R  +  + +   +  + +  + +L     +   SL   RE  
Sbjct: 563 EHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNREREEF 622

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSF-LFSDFVEQKYFLPEEIHQRLCERG 545
           +   +  H   L +  +E AD        ++   + + +   E +    +       E+ 
Sbjct: 623 MNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDREKAFEQEKK 682

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
             E   Q  +++ +  L     E   +D  +     L +        R+  E++  + ++
Sbjct: 683 LEEERIQSLKEMAEKELEHVQVELKRLDAER-----LEIKLDRERREREWAELKDSVEEL 737

Query: 606 TAKGEAEKTAI--LISILHEVHIQIHQIESQE 635
             + E  +T    L +   E+  +I +++  E
Sbjct: 738 KVQREKLETQRHMLRAERDEIRHEIEELKKLE 769


>gi|319946573|ref|ZP_08020807.1| SMC family domain protein [Streptococcus australis ATCC 700641]
 gi|319746621|gb|EFV98880.1| SMC family domain protein [Streptococcus australis ATCC 700641]
          Length = 1181

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 39/125 (31%), Gaps = 17/125 (13%)

Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
           +   EL +L   L S     +    +   Q+       E L+ L  Q   A L     + 
Sbjct: 672 FIKPELDRLHQELVSLQKNLREVEGQVQEQQDQVTQSQEKLESLKGQGEGARLEEQRLQL 731

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
                                  +Q  + ++ +  +  + +      L+    ++  ++ 
Sbjct: 732 AFEQA-----------------HQQLLDAQELLELIRTELDEGSDQELLQKRDDLQARLK 774

Query: 630 QIESQ 634
           +IE++
Sbjct: 775 EIEAE 779


>gi|312373893|gb|EFR21562.1| hypothetical protein AND_16861 [Anopheles darlingi]
          Length = 1033

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 92/310 (29%), Gaps = 32/310 (10%)

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
              V      +P          + +    +    V+  +    + +        +     
Sbjct: 141 PTMVKQLDRHEPLHRSHMSPPESLQ--TSKRASFVETGFVETLKPQFTPGQSITSPSPAP 198

Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467
                +  +D+       Q I +  +Q         +   R  +   R R+      +  
Sbjct: 199 TPAPSSTTEDRIHILQLQQEIEELRKQNGDLNEKLETLKQRRAEDRERLREFDKMMTQYE 258

Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------- 520
           Q    K K+    S  +  L           QE    +      + E+ +L         
Sbjct: 259 QLVEFKSKIMDAHSQLQRELQRA-------KQEAKDAIEARELHSEEMAELAENVEMITL 311

Query: 521 --FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-----D 573
              +  +  E      +   +R+ E      + + + Q + +   S    A+ V     +
Sbjct: 312 DKEMAEEKAETLVLELDAAKERIEELTLDLEILKTEMQEKFSSGGSGAGGADGVAASTYE 371

Query: 574 VRQGYQQALALYK---RFRLLSR----QKEEIEKQI--AQVTAKGEAEKTAILISILHEV 624
            +Q  QQ + L +   R R LS     + +++EK++   +            L + + E+
Sbjct: 372 FKQMEQQNVRLRETLVRLRDLSAHEKHEIQKLEKELETKKSEVAELQRTKEKLSTKIDEL 431

Query: 625 HIQIHQIESQ 634
             Q+  ++ Q
Sbjct: 432 EAQLGDLQEQ 441


>gi|296483595|gb|DAA25710.1| myosin-7 [Bos taurus]
          Length = 1900

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1566 NQIKAEMERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1626 EIQLSHANRLAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1685

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      E    +L  +++  V
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMEADLSQLQTEVEEAV 1745

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1746 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1806 KGGKKQLQKLEARVRELENELEAEQKRNA 1834


>gi|194041957|ref|XP_001929355.1| PREDICTED: alpha-internexin-like [Sus scrofa]
          Length = 499

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/316 (8%), Positives = 81/316 (25%), Gaps = 34/316 (10%)

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           G        S G D         +    +   +               +      +   L
Sbjct: 63  GLAYRRSPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRAL 122

Query: 405 EIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           E  L        +   +   + + +R+   QL +              ++    + +   
Sbjct: 123 EAELAALRQRHAEPSRVGELFQRELRELRAQLEEASSARAQALLE---RDGLAEEVQRLR 179

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD----NNELQKLW 519
            R  + S  +    +    ++  +    +    + ++    L ++ +     + E+ +L 
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTE--------A 569
           + L +                L           + L  +   +      ++        A
Sbjct: 240 ATLQASSQAAAEVDVAVAKPDLSSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299

Query: 570 NIVDVRQGYQQALALYKRF---------------RLLSRQKEEIEKQIAQVTAKGEAEKT 614
              +  +  ++ +  Y+R                  L RQ  E+E++          +  
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEER-HSAEVASYQDNI 358

Query: 615 AILISILHEVHIQIHQ 630
             L + L     ++ +
Sbjct: 359 GQLENDLRNTKSEMAR 374


>gi|172036562|ref|YP_001803063.1| putative ATPase [Cyanothece sp. ATCC 51142]
 gi|171698016|gb|ACB50997.1| putative ATPase [Cyanothece sp. ATCC 51142]
          Length = 398

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-AQ 604
             E L++L  Q  +              + +  ++   L K+ R L R+K ++  +I  +
Sbjct: 11  IKEDLEKLKEQELEKQSKRQQEMERDRRLVRQEEEYQLLQKKQRELEREKAKLRAEIRRR 70

Query: 605 VTAKGEAEKTAILI-----SILHEVHIQIHQIESQEA 636
              K E E+    I         ++     ++  QE+
Sbjct: 71  QELKAEQERIQQEILNREERRKQQIQWDREKLRQQES 107


>gi|147815739|emb|CAN74873.1| hypothetical protein VITISV_038920 [Vitis vinifera]
          Length = 1234

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 80/228 (35%), Gaps = 14/228 (6%)

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
           +  +   ++++    +   +        K     R +    Q  ++  + K +  ++   
Sbjct: 507 HLLKDELEKIRADITEQELQIHEETERLKVTEEERSEHHRLQLELKQEIDKCRHQEEMLQ 566

Query: 483 REAALLLTLINHPAILQEQYQELADI-RYDNNELQKL---WSFLFSDFVEQKYFLPEEIH 538
           +E   L        + ++ ++ L +       E++++      L    + ++  L +E  
Sbjct: 567 KEREDLK---QERIMFEKDWEALDEKRAVITKEMREIGDEKEKLEKLHLSEEERLKKEKL 623

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-- 596
                        +++++   A +       +        Q       R R L  + +  
Sbjct: 624 AMEEHIQRELEAVRIEKESFAAIMKHEQVTLSEKAQNDHSQMLRDFELRKRDLEIEMQNR 683

Query: 597 --EIEKQIAQVTAKGEAEKTAIL--ISILHEV-HIQIHQIESQEAMIE 639
             EI+K++ +     E E+   L  I+ L EV   +I +++++   IE
Sbjct: 684 QDEIQKRLQERERAFEEERERELNNINHLKEVARREIEEMKTERRRIE 731


>gi|145503684|ref|XP_001437816.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404973|emb|CAK70419.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1681

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 72/228 (31%), Gaps = 12/228 (5%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           D K +   SQ + ++L  +            +  ++    + Q      + ++ L+K  +
Sbjct: 655 DNKEKIKLSQLLNEQLNSITDLNKQLAITNIKNDQQLEETKAQFSSELVVRETELIKNVI 714

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            +    +   LL  + N      +  Q +  +     E +  +  L      Q     ++
Sbjct: 715 QQSSETQ--KLLTQIGNLIEQSDKFKQTIEKLELKLGEQELKYQILSEQQKAQDTQSLQQ 772

Query: 537 IHQRLCERG---------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
              ++ E              L  +L+ +  D        +    D+     Q   L K 
Sbjct: 773 FQNQIEELQQLTQQQEFKISNLSNELNEKSLDLQTQQLHNQIKEQDLNNQQLQINNLNKS 832

Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTA-ILISILHEVHIQIHQIESQ 634
              L     E+++QI  +  + + ++     +  +     Q  QI+  
Sbjct: 833 IANLENLNNELKQQIQSLDQRVQNDQCQIQNLEQIINEQEQKKQIQET 880


>gi|123421283|ref|XP_001305955.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121887503|gb|EAX93025.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2366

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 40/351 (11%), Positives = 101/351 (28%), Gaps = 28/351 (7%)

Query: 305  YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE-DPDSFI 363
               +++ + + +I    +  +          +L         ++  +     E D ++  
Sbjct: 870  EMNKVIAEQAAKIKALQEAVNNSQPKGEDPNELHDKINDLMAQIKALQQKNNELDKENKE 929

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP-DERAELEIHLKNCINHIKDQKLRY 422
                K A E    +    +    K  ++    N       +     K  I  ++D+    
Sbjct: 930  LEAAKEASENENNDLKNDLQTKNKALSKAERDNDKLQNANKALDEAKEKIKALEDEV--- 986

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                 ++  + +       E     R    K+   ++ +    +L   +  K KL  +  
Sbjct: 987  ---SDLKALVSEKDGDLQKEKRENERLVANKDQLTKNNEELYDQLKNETTEKIKLDGQVK 1043

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDN---NELQKLWSFLFSDFVEQKYFLPEEIH 538
              E  L      +  + +            +    ELQ   + L     E      E   
Sbjct: 1044 NAERDLAKANATNEELTKSNEHLQEQNDEKDAKIKELQAKLNELEKKLSELPGLQDEIAK 1103

Query: 539  QRLCERGF--------------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
            Q+                       + +L ++  +        E    ++    +     
Sbjct: 1104 QKETNNELQNNVNDLEKAGKDKDNKINELQKKANELENTKKDLEDVTNELENTQKDLDNS 1163

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL--HEVHIQIHQIES 633
              + R L +Q ++++KQI  +  +    K  +  S L   E+  +   +++
Sbjct: 1164 NNKNRDLEKQIKDLKKQIEDLNREKNDLKDQLDTSKLAGDELSKRDEVLDN 1214



 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 78/229 (34%), Gaps = 17/229 (7%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             DRL+    +  T         K+ +  + +     +     L   K + +   +    L
Sbjct: 1335 ADRLKLNNDQLQTNIDDLDNKLKEESAEKIKLDAQAKAADRELQSAKAATEEEKKANDQL 1394

Query: 489  LTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
               I      L+E   +L +++   N+  ++ +   S   +          +        
Sbjct: 1395 QGQIKDKDNKLKEMQAKLNEMQKKANDADRIQNLANSLKSQLDDANKSNNEKDNQLNELQ 1454

Query: 548  ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            + L +  ++           E    D+ +  ++  A   + R L +Q ++++KQI  +  
Sbjct: 1455 KKLNEAQKKANQLEPTKQELEDARNDLNEKQKELDASNNKNRDLEKQIKDLKKQIGDLNN 1514

Query: 608  K-------------GEAEKTAI---LISILHEVHIQIHQIESQEAMIEG 640
            +              + E +     L ++  ++  Q+ + +  EA ++G
Sbjct: 1515 EKQALKDDLDTSKLADDELSKRDEVLGNLKKQLADQLAKNKELEAKVKG 1563


>gi|88602463|ref|YP_502641.1| hypothetical protein Mhun_1174 [Methanospirillum hungatei JF-1]
 gi|88187925|gb|ABD40922.1| hypothetical protein Mhun_1174 [Methanospirillum hungatei JF-1]
          Length = 682

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 73/231 (31%), Gaps = 17/231 (7%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y   I +  + L +   +      +        ++ +  + + ++    + K        
Sbjct: 89  YLTRISELEKSLSEYLSSIQEKEAQIQILTDLVKEHENTASQKIEDFSARIKQLTDQLES 148

Query: 484 EAALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           +  L         +  E  + LA    ++    +EL+ L S L +   E+K    + I +
Sbjct: 149 QKVLFEK--EKSDLRSEYEEILAKTRDEVVRKEHELRTLASDLKNRIAEEKRVQKDRIRE 206

Query: 540 RLC----ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-----FRL 590
           +             L+                   +    Q   Q +    +        
Sbjct: 207 QGEYTKRISELQSFLESARSDYTHLQSLFNEETKQLTRKVQDLTQEIEQLIQGKTDLEAD 266

Query: 591 LSRQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIESQEAMIE 639
           LS +  ++E++I  +  K   +AE    L     ++    +++++  A+ +
Sbjct: 267 LSLKIRDLEREIKSLHEKSARDAETIEQLTRENSDLVRLSNELQNDGALKD 317


>gi|31455194|gb|AAH13023.1| NUMA1 protein [Homo sapiens]
          Length = 1193

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 69/220 (31%), Gaps = 20/220 (9%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           R+ L+Q  Q      +   R  ++       +       +++          + + + L 
Sbjct: 474 REELEQSKQAAGALRAELLRAQRELGELIPLRQKVAEQERTAQQLRAEKASYAEQLSMLK 533

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                H  + +E               ++          E+       +      R   E
Sbjct: 534 KA---HGLLAEENRGLGERANLG----RQFLEVELDQAREKYVQELAAVRADAETR-LAE 585

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           + ++     R+  + +A  E   V V +  Q+     ++   L+ Q EE+ K++A     
Sbjct: 586 VQREAQSTARELEVMTAKYEGAKVKVLEERQRFQEERQK---LTAQVEELSKKLADSDQA 642

Query: 609 GEAEKTA---------ILISILHEVHIQIHQIESQEAMIE 639
            + ++                   +  Q++++++Q +  E
Sbjct: 643 SKVQQQKLKAVQAQGGESQQEAQRLQAQLNELQAQLSQKE 682


>gi|332849294|ref|XP_003315819.1| PREDICTED: 5-azacytidine-induced protein 1-like [Pan troglodytes]
          Length = 1234

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 88/280 (31%), Gaps = 32/280 (11%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               +    K   ++                 + +   +  E+A  E  +      IK+  
Sbjct: 799  CEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVT 858

Query: 420  LRYYY--SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +R      Q +  R +Q  ++  + H        + A  R  +   +   Q    K  L 
Sbjct: 859  VRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALG 918

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            ++   R                   Q L   ++    LQ+    L+S+  E++  L ++ 
Sbjct: 919  QQERERARQ-------------RFQQHLEQEQW---ALQQQRQRLYSEVAEERERLGQQA 962

Query: 538  HQRLCERGFGELLKQLDRQ--VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
             +        EL +QL+         L +   +      R+   +   L ++        
Sbjct: 963  AR--QRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQL------- 1013

Query: 596  EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             E+E+Q  +     + E    L++   E+  +I +   +E
Sbjct: 1014 -ELERQAWEAGRTRKEEAW--LLNREQELREEIRKGRDKE 1050


>gi|332212801|ref|XP_003255507.1| PREDICTED: structural maintenance of chromosomes protein 3
           [Nomascus leucogenys]
          Length = 1250

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 36/346 (10%), Positives = 93/346 (26%), Gaps = 24/346 (6%)

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T     ++  L K     +   + +   L    K   +                    D 
Sbjct: 215 TEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDE 274

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            S  R        +L        D +   E + R   T     + E             +
Sbjct: 275 LSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQL-------SAE 327

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    Q  +  L+    +     +   R      R +  +   ++  + +  + K +  
Sbjct: 328 RQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSV 387

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK--LWSFL--FSDFVEQKYFLPE 535
               E  +               ++    ++ + E +   +   L      +  K     
Sbjct: 388 KEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIA 447

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            IH+ L +               +             D+ +   +   L +++  +  +K
Sbjct: 448 AIHKDLEDTE------------ANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKK 495

Query: 596 EEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMIEG 640
           +E++ +   +  +  AE +         E   Q+ +  + +A++ G
Sbjct: 496 DELQSERNYLWREENAEQQALAAKREDLEKKQQLLRAATGKAILNG 541


>gi|332299061|ref|YP_004440983.1| hypothetical protein Trebr_2445 [Treponema brennaborense DSM 12168]
 gi|332182164|gb|AEE17852.1| hypothetical protein Trebr_2445 [Treponema brennaborense DSM 12168]
          Length = 572

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 38/335 (11%), Positives = 103/335 (30%), Gaps = 14/335 (4%)

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
                 I+   + D+         +    C+ +     N V +       +      +  
Sbjct: 108 KPAYEMIIQLGNRDNRPDDEEASKVLKDFCNYLTEKYPNIVPIGIYL--HNDEFSIDEET 165

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
            +K+        D ++            + ++ +   L            +    Q   +
Sbjct: 166 HQKIYSPVHIHFDYVYVAHLGKSLKTGMELQSSMSGALAEMGFVTAKG--KGTAQQQFEE 223

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            ++   Q +  E                QK   Q++ ++   + +LSKK    E      
Sbjct: 224 SVRHDLQDFAEERGITIDRTPGEKHSHKQKPVYQQMKENEKKEKRLSKKEQQLEKERFD- 282

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           L  +     E+ ++L      N E + L  F+    + +K          L  +      
Sbjct: 283 LDKNIESFNEKSEQLEKDIQTNTE-KSLDLFIKESKLSKKEKEQHTKQSELERKESDLQS 341

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALA------LYKRFRLLSRQKEEIEKQIAQ 604
           ++L  ++++             ++    ++ +       L K+ + L  QK+EI+++   
Sbjct: 342 RELMVEIKETNNKFQRKRNEKKELELAEREKVVELGEAPLLKKQKELDEQKKEIDQKFKN 401

Query: 605 VTAKGEAEKTAILISIL--HEVHIQIHQIESQEAM 637
                +  +T    +      + ++ + +E  +++
Sbjct: 402 ADKTLQDAQTIQDENKKASKNLELEQNDLERNKSL 436


>gi|327264671|ref|XP_003217135.1| PREDICTED: myosin-4-like [Anolis carolinensis]
          Length = 1938

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            E    +   ++D  +++A       +  I D     ++          L R K+ +E+ +
Sbjct: 1735 ETDLAQFQGEIDDAIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTV 1794

Query: 603  AQVTAKGEAEKTAILI---SILHEVHIQIHQIESQ 634
              +  + +  +   L      L ++  ++ ++E++
Sbjct: 1795 KDLQHRLDEAEQLALRGGKKQLQKLEARVRELENE 1829


>gi|309358126|emb|CAP34476.2| CBR-HCP-2 protein [Caenorhabditis briggsae AF16]
          Length = 1345

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 89/283 (31%), Gaps = 11/283 (3%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS--FNTPDERAELEIHLKNCINHIKD 417
              IR        +L  E+            EN+           +LE  +      +K 
Sbjct: 399 HEEIRSMLMEEIRRLESENSNFQLRNPTENIENQRLLSEKLSLEQQLEAKINYINEELKK 458

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            ++   + Q +   L+       T          K     D+    Q+            
Sbjct: 459 SEMFNAHIQELTAALEVSQTNSETLKQSLEEKEAKIQALIDEMSSLQKSTDGVAQLRIDL 518

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           +  + +   L  +L N   +++E  + +  ++      Q   S L +  ++      EE 
Sbjct: 519 ESANSKTQELTDSLKNSQDVIEENTEVILKLKNTAEASQTEVSQL-TVSLQTVTSQLEEA 577

Query: 538 HQRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            QRL    F    L  +L+   ++  L   + EA I  + +  + + ++  + +    + 
Sbjct: 578 RQRLEFSEFKISSLQTELEEVRQECLLDGESAEAKIKILEESAEDSQSIRIQLKEAETRI 637

Query: 596 EEIEKQIAQVTAKG------EAEKTAILISILHEVHIQIHQIE 632
           +E+E     +   G        +        L E   QI +++
Sbjct: 638 KELEAAKQALEEIGQDSVTKNDDIRDQYQEKLEEAERQIQELQ 680


>gi|307180375|gb|EFN68401.1| Citron Rho-interacting kinase [Camponotus floridanus]
          Length = 2946

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 87/289 (30%), Gaps = 12/289 (4%)

Query: 354  SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
               +D +         A E    E     + L  R  +        E   L   L+    
Sbjct: 1632 RNEQDSNHCRESRLNVALELAQNELKDCQEQL--RTIQATLPARDAEIETLRKQLQEKAK 1689

Query: 414  HIKDQKLRYYYSQAIRDRLQ-------QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             I D K       +++++L+       QL Q+     S          +        ++ 
Sbjct: 1690 QIDDLKTSEQMLTSLQEQLERMNLENEQLKQQLEVTKSDLNETMINLEQSEALALNLEQA 1749

Query: 467  MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF-LFSD 525
             Q  +   K  +    +E   L  + N   +L+     +  +  +N  L++L      + 
Sbjct: 1750 AQDKVTLQKRLQDSLNKEEEQLRKVYNLEELLKRLEHSVTKLETENASLKELDQAQATNC 1809

Query: 526  FVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583
             +    +          E      + L+ L  +V      +   +  +    +    A  
Sbjct: 1810 AITDTKYEVNAKIDHWQEKIEKLEQQLQALREEVTIEKQTAKQAQLALWKKEKELSDANL 1869

Query: 584  LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
              +     S++ E+  K + +   K + + ++ +      +   + +++
Sbjct: 1870 DKRIAVRESKRAEDRIKILQEEKQKLQDKLSSKIKEEEENLKKLLKELD 1918



 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 38/329 (11%), Positives = 91/329 (27%), Gaps = 19/329 (5%)

Query: 325  DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
             P  + A   +++                   + P  F +   +    KL  +   L + 
Sbjct: 1377 FPDFKRALHPVEMYPTETAK-VMSEESTYFEYKFPKQFSKEKMELEA-KLDEKKRELQEK 1434

Query: 385  LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI---RDRLQQLFQKYIT 441
              +R+         +         +         K R    + +   R  L  L +    
Sbjct: 1435 QMQRKIHELQDKVRELSQIESQLEEKTRRLQTSNKERDILEKELITTRSELASLKRTLEL 1494

Query: 442  EHSGYGRYWKKN-ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500
            E         +     RD K   +   +  + +             +     ++  I  +
Sbjct: 1495 ERQERRELETRALGLIRDAKRKWENAEKDKIAQLNQHIAAQTI--KITSLCTSNNEISSQ 1552

Query: 501  QYQELADIRYDNNELQKLW---SFLFSDFVEQKYFLPEEI------HQRLCERGFGELLK 551
              +   D++  N EL KL    +       + +    + +       + +  R   +L  
Sbjct: 1553 LQKAECDLQTANAELDKLRIFQTQYKESLAKTRELNRQSVQGVEIKLEEISARAHNQLAD 1612

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA--QVTAKG 609
               +   +    +        +    + +   L     L   + ++ ++Q+   Q T   
Sbjct: 1613 LRAKLDFETAKNTDLETRLRNEQDSNHCRESRLNVALELAQNELKDCQEQLRTIQATLPA 1672

Query: 610  EAEKTAILISILHEVHIQIHQIESQEAMI 638
               +   L   L E   QI  +++ E M+
Sbjct: 1673 RDAEIETLRKQLQEKAKQIDDLKTSEQML 1701


>gi|301767886|ref|XP_002919377.1| PREDICTED: cingulin-like [Ailuropoda melanoleuca]
          Length = 1196

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 69/220 (31%), Gaps = 13/220 (5%)

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            RLQ   Q+                  R+      + ++      K S+    R+   L  
Sbjct: 904  RLQDETQRLRQALQASQADRDTARLDRELLTQRLQGLEQEAENKKRSQDDRTRQLKGLEE 963

Query: 491  LINHPAILQEQYQELADIRYDNNELQK-------LWSFLFSDFVEQKYFLPEEIHQRLCE 543
             ++      E  +E + +      + +       L + L  +   ++    ++I      
Sbjct: 964  KVSRLE--AELDEERSTVELLTERMNRGRDQVDQLRTELMQERSARQDLECDKISLERQN 1021

Query: 544  RGFGELLKQLDRQVRDAGLWSATT---EANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            +     L   +   + +   S            ++   ++   L    R L R+ +E+  
Sbjct: 1022 KDLKSRLASSEGFQKPSASLSQLESQTRELQERLQAEEREKTVLQSTNRKLERRVKELSI 1081

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            Q+     +  +++   L   +  +  Q+ + E +   ++G
Sbjct: 1082 QM-DDERQHVSDQKDQLSLRVKALKRQVDEAEEEIERLDG 1120



 Score = 37.6 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 86/262 (32%), Gaps = 24/262 (9%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
              W  E E  S      + E +   +       D+       + +  RLQ L Q+   + 
Sbjct: 889  KEWASEAEKNSGGLSRLQDETQRLRQALQASQADRDTARLDRELLTQRLQGLEQEAENKK 948

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA----ALLLTLINHPAILQ 499
                   ++     ++    +  +       +L  +   R       L   L+   +  Q
Sbjct: 949  RSQDDRTRQLKGLEEKVSRLEAELDEERSTVELLTERMNRGRDQVDQLRTELMQERSARQ 1008

Query: 500  EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
            +   +   +   N +L+            + +  P     +L  +   EL ++L  + R+
Sbjct: 1009 DLECDKISLERQNKDLKS------RLASSEGFQKPSASLSQLESQT-RELQERLQAEERE 1061

Query: 560  AGLWSATTEANIVDVRQGYQQALA-----------LYKRFRLLSRQKEEIEKQIAQVTAK 608
              +  +T       V++   Q              L  R + L RQ +E E++I ++   
Sbjct: 1062 KTVLQSTNRKLERRVKELSIQMDDERQHVSDQKDQLSLRVKALKRQVDEAEEEIERLD-- 1119

Query: 609  GEAEKTAILISILHEVHIQIHQ 630
            G  +K    +   HEV+ Q+  
Sbjct: 1120 GLRKKAQRELEEQHEVNEQLQA 1141


>gi|256544750|ref|ZP_05472122.1| surface protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399639|gb|EEU13244.1| surface protein [Anaerococcus vaginalis ATCC 51170]
          Length = 784

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQA----LALYKRFRLLSRQKEEIEKQIAQV 605
           +K L+ Q++D        ++ I ++++  +        L +    L  +  + + +IAQ+
Sbjct: 305 IKDLENQIKDLNDKKQEDQSKIDELKKKLESCKDNGEKLKQEKSKLEEEIRDKDNKIAQL 364

Query: 606 TAK----GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             +      +     LI+ + ++  ++ +++ + A ++
Sbjct: 365 NKEIEDLKNSNNNDELIAEITQLKDELKRLQYENAKLK 402


>gi|225428689|ref|XP_002281738.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 3111

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 81/259 (31%), Gaps = 6/259 (2%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
                 +  +      +    LE   K  I    D  L+  Y       +  L ++    H
Sbjct: 1919 EHMALQKAHAEMEQIEWCTVLESLKKATIFLKVDADLKEQYLVDKEGEVAILQKEVEEAH 1978

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA---ILQE 500
                    K  +   +      + +      +  K  +  E      ++ +     I  +
Sbjct: 1979 REKQDLLLKLYQSSSRIAEVDSVNKVLEEDIQYIKAVACSEQISWHAVLENLKKEMIFLK 2038

Query: 501  QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
               +L +  + + E +     L  + VE+     +++  +L +          + +V + 
Sbjct: 2039 VDADLKEHCFADKEFEV---ALLQNEVEEVQRERQDLLSKLNQNSSRIAEVNAENKVLEQ 2095

Query: 561  GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
             +      A   D  +G    L   K   ++  Q+ E E +  Q   K +        S 
Sbjct: 2096 DIQLLKDFACTNDALKGELSELMEAKMRLMIQVQELEAEYRKVQEDLKIKETALECSSSQ 2155

Query: 621  LHEVHIQIHQIESQEAMIE 639
            +  +  Q  ++++  +++E
Sbjct: 2156 ISVLDQQNQKLQNDISLLE 2174


>gi|168186923|ref|ZP_02621558.1| putative RecF/RecN/SMC N domain [Clostridium botulinum C str.
           Eklund]
 gi|169295224|gb|EDS77357.1| putative RecF/RecN/SMC N domain [Clostridium botulinum C str.
           Eklund]
          Length = 767

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 57/154 (37%), Gaps = 20/154 (12%)

Query: 494 HPAILQEQYQEL----ADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFGE 548
           +  +L++  ++L    ++I   +  L+KL         E   +   + +      +    
Sbjct: 407 YKTLLEKYQEKLKLINSNIEASSKNLEKLKVEAQDLKEEIDNFKSTDTLENNKDYQDLKT 466

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTA 607
            + +L+ ++                 ++   Q   L +R   L  + EE+  Q+  +   
Sbjct: 467 HISELENKL--------------QQPKEVNNQVQELKERKSKLELELEEVNSQLTYKEQN 512

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           +   ++   L     ++  QI ++E QE + E F
Sbjct: 513 EKLKDRIQELQDKEKKLAQQIAELEGQEYLCEEF 546


>gi|159475230|ref|XP_001695726.1| hypothetical protein CHLREDRAFT_149876 [Chlamydomonas reinhardtii]
 gi|158275737|gb|EDP01513.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 1971

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 7/94 (7%)

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            L +      +++L ++ R          A I   RQ  ++A         L R K+E E+
Sbjct: 1146 LVDESALTAVRELVQRARQVLAEDQAELARIERERQEAERARKEALERERLERLKQEQER 1205

Query: 601  QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            Q  +     E E        L     +  + E  
Sbjct: 1206 QKREKAEAAERE-------RLQAEKREKAKAEKT 1232


>gi|119627917|gb|EAX07512.1| syncoilin, intermediate filament 1, isoform CRA_b [Homo sapiens]
          Length = 394

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 44/117 (37%), Gaps = 6/117 (5%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QA 581
            +   +      E++ Q+L           L    R +  +      +  D+ + Y+ Q 
Sbjct: 200 LAQLRDAYQKQKEQLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQF 259

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           L L +R    ++  +  + +I ++      E    L +   ++ +Q   +E Q A++
Sbjct: 260 LRLLERKEAGTKALQRTQAEIQEM-----KEALRPLQAEARQLRLQNRNLEDQIALV 311


>gi|119594665|gb|EAW74259.1| hCG23402, isoform CRA_d [Homo sapiens]
          Length = 648

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 87/270 (32%), Gaps = 23/270 (8%)

Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL------RYYYSQAIRDRLQQL 435
            D   +    + ++  P +++E  + ++     I  + L      +    + +   L++ 
Sbjct: 116 HDQRLEGTVRDPAWQKPQQKSEGALEVQVWEGPIPGESLASGVAEQEALREEVAQ-LRRK 174

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            +    E     R  +       +        + +  +     +    E A         
Sbjct: 175 AEALGDELEAQARKLEAQNTEAARLSKELAQARRAEAEAHREAEAQAWEQA--------- 225

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +       ++   + E + L   L +   E++ +  E    R       E ++ L+ 
Sbjct: 226 RLREAVEAAGQELESASQEREALVEALAAAGRERRQWEREGSRLRAQSEAAEERMQVLES 285

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQAL----ALYKRFRLLSRQKEEIEKQIAQV--TAKG 609
           + R     +         ++   ++A+     L  R   L R+ E+   +  +     + 
Sbjct: 286 EGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEHLQRELEQAALERQEFLREKES 345

Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + ++   L   L E  +Q      +EA++E
Sbjct: 346 QHQRYQGLEQRL-EAELQAAATSKEEALME 374


>gi|148230881|ref|NP_001080972.1| spindle checkpoint protein Xmad1 [Xenopus laevis]
 gi|49115165|gb|AAH73210.1| Mad1-A protein [Xenopus laevis]
          Length = 718

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 77/245 (31%), Gaps = 14/245 (5%)

Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK---YITEHSGYGRYWKKNARHR 457
           R   E   K   + +  +  +    + +  +L +  +                    + R
Sbjct: 288 RRAAERFNKMKEDLVGSEIEKEQLVKKL--KLWENLEHTTGLNIRTPDDFSRQIMAVQQR 345

Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517
           + K   + +   +  +   + +  L+E      L+   +   E+ +           LQK
Sbjct: 346 ELKLKEENMTIHNSARMLETSRQQLQEE-----LLKVQSGFLEEKKRREHQEALVRRLQK 400

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQ 576
               L +   +    + +     L        L +  ++  D         A +   + +
Sbjct: 401 -RVLLLTKERDGMRAILDSYDSELTPTEHSPQLSRRLKEAEDILQKVQDHNAEMETQLSE 459

Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQ 634
             + A    ++  LL+ + + ++ Q+           E  + L   + E+  +  ++E +
Sbjct: 460 ALEDAGIQKQKSELLTAELKVLKSQMGSSDQTMSFTNEAMSALRLKIEELEAERGRLEEE 519

Query: 635 EAMIE 639
             ++E
Sbjct: 520 NKILE 524


>gi|19705509|ref|NP_599220.1| polyamine-modulated factor 1-binding protein 1 [Rattus norvegicus]
 gi|81870111|sp|Q9Z221|PMFBP_RAT RecName: Full=Polyamine-modulated factor 1-binding protein 1;
           Short=PMF-1-binding protein; AltName: Full=Outer dense
           fiber protein 3
 gi|13242885|gb|AAC72233.2| outer dense fiber ODF3 [Rattus norvegicus]
          Length = 971

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 52/154 (33%), Gaps = 14/154 (9%)

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLD 554
           +  E+  EL  ++    EL      L            E +   + +      E  +QL 
Sbjct: 385 LFLEKETELEKLQSTTKELDA---NLQEVRQSTSKIDNEGLRSEIQKLKESLEEAREQLR 441

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA---------QV 605
              ++          +  ++   +++      + +      ++++ Q+          + 
Sbjct: 442 VSDQNLSQCKDEAHLSANNLEDAHRKLENCLLQDKRKDDVIKDLQSQLQKLQKESSETEE 501

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             K   ++   L S L+E   ++   E ++++++
Sbjct: 502 ERKNNRQQLLELSSELNEGQRRLSSAEKEKSLLQ 535


>gi|329896665|ref|ZP_08271658.1| Chromosome partition protein smc [gamma proteobacterium IMCC3088]
 gi|328921601|gb|EGG28977.1| Chromosome partition protein smc [gamma proteobacterium IMCC3088]
          Length = 930

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 83/273 (30%), Gaps = 29/273 (10%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-QKLRYYYSQAIRDR 431
           +   ++        ++E E ++     +  +L   ++     I D +  R       R  
Sbjct: 209 ERQAQAAEKYREFKQQERETKALLAGMQWRDLSQQVETLAFSINDIEVQREGIIAEYRAL 268

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
              L +K + +        +  A +        R  Q+   + +                
Sbjct: 269 EADLEEKRVAQTEAAEHCNRVQADYYAIGAEVTRFEQAINFQNQ---------------- 312

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-ERGFGELL 550
             H  +LQ   Q  A +   N  LQ     L       +   P  +      E+   EL 
Sbjct: 313 -RHSQLLQRLAQTDASMALANESLQSDLESLTEAKETLETVSPNRVEAEARVEQSAEELA 371

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQ---ALALYKRFRLLSRQKEEIEKQIAQVTA 607
              +        W    ++     +Q   Q      L +    L+R+ E +++++A +  
Sbjct: 372 MAEEAMQLWQQSWDGFNQSASSARQQSEVQQSRIKHLEQVLSRLARRSEALKEELAALAP 431

Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             +       +     +  Q+  +  ++A +EG
Sbjct: 432 SSD-------LGDQQAMQAQLEALRERQAGLEG 457


>gi|301784276|ref|XP_002927554.1| PREDICTED: uncharacterized protein C6orf174-like [Ailuropoda
           melanoleuca]
          Length = 925

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 22/197 (11%)

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPA 496
             + +   +   +      +       + S L KG+    PS REA L   L  +     
Sbjct: 518 RKKMAKIDKEKDRFEHELQKYRSFYGDLDSPLPKGEAGGPPSTREAELKLRLRLVEEEAN 577

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           IL  +  EL        E + L + L     +        +      R   E L +L + 
Sbjct: 578 ILGRKIVELEV------ENRGLKAELDDLRGDDFNGSANPLM-----REQSESLSELRQH 626

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           ++     +     N+ D+ +  ++  A   +++         +    +     ++ KT  
Sbjct: 627 LQLVEDETELLRRNVADLEEQNKRITAELNKYKY--------KSGGHESARHHDSAKTEA 678

Query: 617 LISILHEVHIQIHQIES 633
           L   L    +QI+++  
Sbjct: 679 LQEELKAARLQINELSG 695


>gi|296214040|ref|XP_002753542.1| PREDICTED: myosin-Vc [Callithrix jacchus]
          Length = 1742

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 7/136 (5%)

Query: 500  EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
            E   E  ++ +    L+K    L S F  QK    +EI            +  L +++  
Sbjct: 1129 EHLNEDGELWFAYEGLKKATRVLESHFQSQKDCYEKEI------EALNFKVVHLSQEINH 1182

Query: 560  AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
                          +R    +  +         +Q  E+EKQ   +  +   E+   +  
Sbjct: 1183 LQKLFREENDINESIRHEVTRLTSENMMIPDFKQQISELEKQKQDLEIRLN-EQAEKMKG 1241

Query: 620  ILHEVHIQIHQIESQE 635
             L E+  Q+++ + +E
Sbjct: 1242 KLEELSNQLNRSQEEE 1257


>gi|291460396|ref|ZP_06599786.1| putative exonuclease SbcC [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291416963|gb|EFE90682.1| putative exonuclease SbcC [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 1108

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 49/131 (37%), Gaps = 17/131 (12%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCE---RGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           W  L     +++    + +   L +   RG   LL  L+ + R+      +      + R
Sbjct: 271 WQRLLDL--QKRLLSEDGLSAALMDDFLRGLEALLSSLEEENREILSRYESCSRERNEKR 328

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI-----------LISILHEV 624
             Y++  AL + F  LS  ++E+  ++ ++  +   ++              L   L + 
Sbjct: 329 DRYKEGEALARAFTELSDAEKEL-SELKRLDPEFSEKELLSRKIRFSYEISSLFLRLRDS 387

Query: 625 HIQIHQIESQE 635
             ++  +  QE
Sbjct: 388 EKRLSLLREQE 398


>gi|197302413|ref|ZP_03167469.1| hypothetical protein RUMLAC_01141 [Ruminococcus lactaris ATCC
           29176]
 gi|197298534|gb|EDY33078.1| hypothetical protein RUMLAC_01141 [Ruminococcus lactaris ATCC
           29176]
          Length = 874

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 50/141 (35%), Gaps = 5/141 (3%)

Query: 498 LQEQYQELADIRYDNNELQKLW----SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
           L+E+Y+    ++  ++ L         ++   F+  K     +    L +     +  +L
Sbjct: 364 LKERYEVFHGVKITDSALVAAVTLSNRYISDRFLPDKAIDLVDEACALIKTELDSMPTEL 423

Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613
           D   R   +     E+ +        +    + +  L   +++   K++     K   E 
Sbjct: 424 DEL-RRRVMQMEIEESALKKEEDRLSKERLEHLQEELAELKEQYAGKKVQWENEKKSVEH 482

Query: 614 TAILISILHEVHIQIHQIESQ 634
              +   + +V+ +I + + +
Sbjct: 483 VQKIREEIEQVNKEIQKAQRE 503


>gi|171676271|ref|XP_001903089.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936201|emb|CAP60861.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1138

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L     ++       + + L E+     +++L +Q +         E    ++       
Sbjct: 562 LLGPSADELQTELTRLQEELAEKDQR--IERLSKQRKTEEDLREEIENLQENLMTIGHDH 619

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAE------------KTAILISILHEVHIQIH 629
           +   +R + L  +K E++++IA++  + E              +   L     ++ ++  
Sbjct: 620 VEAKQRLKELEAEKRELKERIAELEKEVETAAAGAQVNTKLQGEHESLKQEFDDLKMKSS 679

Query: 630 QIESQEAM 637
            ++S  A 
Sbjct: 680 TLQSDLAA 687


>gi|305632842|ref|NP_001182221.1| myosin, heavy chain 2, skeletal muscle, adult [Macaca mulatta]
          Length = 1939

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       +    +E         I+ +       + +  
Sbjct: 1565 IQLELNQVKSEVDRKIAEKDEEIDQLKRNHIRIVESMQSTLDAEIRSRNDAIRLKKKMEG 1624

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       +     +     +Q  +  +L       +  L+E   L  
Sbjct: 1625 DLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQLHLDDAL-----RTQEDLKEQ--LAM 1677

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1678 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1737

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1738 ISQMQGEMEDILQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1797

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1798 QLRLDEAEQLALKGGKKQIQKLEARVRELEGE 1829


>gi|73998561|ref|XP_851818.1| PREDICTED: similar to Structural maintenance of chromosome 3
           (Chondroitin sulfate proteoglycan 6)
           (Chromosome-associated polypeptide) (hCAP) (Bamacan)
           (Basement membrane-associated chondroitin proteoglycan)
           isoform 2 [Canis familiaris]
          Length = 1228

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 36/346 (10%), Positives = 93/346 (26%), Gaps = 24/346 (6%)

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T     ++  L K     +   + +   L    K   +                    D 
Sbjct: 182 TEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDE 241

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            S  R        +L        D +   E + R   T     + E             +
Sbjct: 242 LSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQL-------SAE 294

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    Q  +  L+    +     +   R      R +  +   ++  + +  + K +  
Sbjct: 295 RQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSV 354

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK--LWSFL--FSDFVEQKYFLPE 535
               E  +               ++    ++ + E +   +   L      +  K     
Sbjct: 355 KEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIA 414

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            IH+ L +               +             D+ +   +   L +++  +  +K
Sbjct: 415 AIHKDLEDTE------------ANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKK 462

Query: 596 EEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMIEG 640
           +E++ +   +  +  AE +         E   Q+ +  + +A++ G
Sbjct: 463 DELQSERNYLWREENAEQQALAAKREDLEKKQQLLRAATGKAILNG 508


>gi|22327782|ref|NP_200054.2| unknown protein [Arabidopsis thaliana]
 gi|332008827|gb|AED96210.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 510

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 48/121 (39%), Gaps = 9/121 (7%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
            + L +   +      E+  + L E+   + +++L  + +         +    +     
Sbjct: 217 HNELVAQVEKDINASFEK--ELLREKEIVDAVEKLAEEAKSELARLRVEK--EEETLALE 272

Query: 579 QQALALYKRFRLLSRQKEEIEKQIA-----QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++  ++      L+R + E+E+Q+      +     E E+   L   + + + +I ++++
Sbjct: 273 RERTSIETEMEALARIRNELEEQLQSLASNKAEMSYEKERFDRLQKQVEDENQEILRLQN 332

Query: 634 Q 634
           +
Sbjct: 333 E 333


>gi|332975153|gb|EGK12055.1| SMC protein family protein [Desmospora sp. 8437]
          Length = 970

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 44/106 (41%), Gaps = 2/106 (1%)

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
           ++  +  E      L++L+++++  G   A        +     +  A     R   R  
Sbjct: 161 QLVHQGEEMNVRPALERLEKEIQGIGKTPAAKNKPYGVISAKCAELEAEVTALRETYRSI 220

Query: 596 EEIEKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            E + ++A +  +    AEK   L   + ++   ++Q + +EA++E
Sbjct: 221 REDQARLAGMKKEWAELAEKEEHLSRRMKKLQEALNQAKEREALLE 266


>gi|327271648|ref|XP_003220599.1| PREDICTED: Golgin subfamily B member 1-like [Anolis carolinensis]
          Length = 2835

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 19/227 (8%)

Query: 416  KDQKLRYYYSQAIRD--RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            KD+  R    Q   D   L++ F++   E        +   +  +   P Q    S +++
Sbjct: 1018 KDRHHREQMKQHKDDYSLLREQFEQQGKEKESLRDQIQALRKALEDSAPPQSEPTSDVIQ 1077

Query: 474  GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
                + P + E           +  ++   EL   R    EL+     L     E +   
Sbjct: 1078 ESGWEVPEVAER---HRSAEEDSATEQLKAELEHFRAGKGELEAHIRHL-----EGELVS 1129

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
              E+  +L E    +LL +++    D             D  +  QQ L   +       
Sbjct: 1130 KSEVILQLQEEA-KQLLAEVEVAKADCRR--------AEDAIEHLQQELKESQAEAAQQE 1180

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +    +  + +  A    E+ A L S L E    + Q++S+    EG
Sbjct: 1181 KLRIQQIDLEEQKAIASKEEIAALNSRLAEKEEFLGQLQSELQEKEG 1227


>gi|326928755|ref|XP_003210540.1| PREDICTED: DNA repair protein RAD50-like [Meleagris gallopavo]
          Length = 1312

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/252 (8%), Positives = 76/252 (30%), Gaps = 20/252 (7%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
              ++  +        +    D++LR  Y      R  +  +K +++         K  +
Sbjct: 280 RQMEKDNQDLQQKMEKVFQGTDEQLRDRYKNH--QRTVKEKEKRLSDCKRELDRASKECQ 337

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREA-ALLLTLINHPAILQEQYQELADIRYDNNE 514
             + +     + +  L       +  ++   +L+ +L     +            +++ +
Sbjct: 338 RFNNEKSELLIERGRLQLQADRHQEHIKVRDSLIQSLSAQLEL-----DGFEQAPFNDRQ 392

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE-LLKQ-------LDRQVRDAGLWSAT 566
           +      L            + + +   +    +  + +       L+R +         
Sbjct: 393 IAVFHELLKERQKSDTEAANQLMREFTQKEAMKQKQIDEIRDRKTGLERTIDLKSDIQNK 452

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI----LISILH 622
            +A + +V+   +Q      R   L ++  + E ++ +       E        L +   
Sbjct: 453 RQAELKNVKYELRQLEGSSDRIVELDQEIIKTEHELEKAERNSNVETLEQEVQTLQNEKI 512

Query: 623 EVHIQIHQIESQ 634
            +   + +++ +
Sbjct: 513 NLDKVLRRLDQE 524


>gi|317028272|ref|XP_001390374.2| M protein repeat protein [Aspergillus niger CBS 513.88]
          Length = 694

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 81/222 (36%), Gaps = 20/222 (9%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           + ++  Y +    R+++L               +   R +  +   + L ++S+   +L 
Sbjct: 196 EAVQEVYRKQ-STRIEELE---KDNKRLEKELEEGKGRWKKTEEQLEDLREASVDVAELK 251

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK---YFLP 534
            K    EA +          ++E   E+A ++  N+ LQ   +   +  V         P
Sbjct: 252 VKLQDAEAKV--------GEIEELKAEIASLQRQNSHLQT-RTHRSTASVSVPGPSESSP 302

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
            ++ Q+L  +     ++ ++ ++ +     A++ A+   +    ++            R+
Sbjct: 303 ADLMQQLESK--SATIEAMELEISNLRAQLASSSAHETQIAALEEKLSGSESALEKAQRE 360

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISI--LHEVHIQIHQIESQ 634
             + +  + + + K   E      +   +  +  ++ +++ +
Sbjct: 361 LTDTKSALTRASEKAVKEGVDKTSTETLIKNLQRELEELKQE 402


>gi|221640188|ref|YP_002526450.1| hypothetical protein RSKD131_2089 [Rhodobacter sphaeroides KD131]
 gi|221160969|gb|ACM01949.1| Hypothetical Protein RSKD131_2089 [Rhodobacter sphaeroides KD131]
          Length = 834

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 54/147 (36%), Gaps = 10/147 (6%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
            E  ++L +I     E   L S L +    Q           +      + ++QL +++R
Sbjct: 483 DEIAEQLWEIALMVEE-GDLASALEALRRAQDRLDEA-----IRNGASQDEIEQLMQEMR 536

Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618
            A       E      R   QQ     +   +   Q +E+  ++ ++  +G   + A L+
Sbjct: 537 QALDNYMR-ELAEEAQRNPDQQQSENRQTMEMSGDQLQEMLDKLQELMEQGRMAEAAELM 595

Query: 619 SILHEVHIQIHQIESQEAMIEGFGKMS 645
            ++ ++   +  ++      +G G  S
Sbjct: 596 EMMRQL---MENMQVTMGEGQGQGPGS 619


>gi|170578347|ref|XP_001894372.1| Immunoglobulin I-set domain containing protein [Brugia malayi]
 gi|158599078|gb|EDP36792.1| Immunoglobulin I-set domain containing protein [Brugia malayi]
          Length = 9464

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 85/281 (30%), Gaps = 18/281 (6%)

Query: 367  GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
             +    KLI  + P ++   +                L   +   +  ++++  +     
Sbjct: 6340 SEQEINKLIDAAKPSINNHEEILYATAQHEIAYHDTFLPKEMNEKVGQVEERDKKDKLID 6399

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            A    L               +  +       +        ++ +    + K+ +     
Sbjct: 6400 ASNMNLSSQSVSASITLKNEVKMEQSPDETAVEAKKEIVEEKTEIAVTDIKKQVATTGIE 6459

Query: 487  L-LLTLINHPAILQEQYQELADIRYDNNELQKLWSF---------LFSDFVEQKYFLPEE 536
            L L  L+ H AI +   +EL ++  + +  +KL                           
Sbjct: 6460 LRLEKLLEHSAIAERAAEELREMEMNLDFEKKLQHETAGVSVVSVTSGSIQASTPLAKAT 6519

Query: 537  IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
              Q+  E    E+   LD       L   T + ++     G+ QA     +   + +  +
Sbjct: 6520 KMQKPTEEELREMETNLD---LHKHLEHETVDVSVFSTTSGWAQASECLAKTTNMDQPID 6576

Query: 597  EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            E  +++A+   +   E+         E+++ + +   QE +
Sbjct: 6577 EAIEEVAKRVEERAVEELKQ-----IEINLDLEKHLQQEIL 6612


>gi|170584045|ref|XP_001896834.1| hypothetical protein Bm1_26920 [Brugia malayi]
 gi|158595825|gb|EDP34319.1| hypothetical protein Bm1_26920 [Brugia malayi]
          Length = 328

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 84/264 (31%), Gaps = 21/264 (7%)

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
           + ++     +   LE+        + D+  R   ++    +L +   +   E     +  
Sbjct: 22  QRKNVALKTQIESLELENSELGAKLNDEIRRSDKAEFDCKQLNERIDEIEKEKEHLRQER 81

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
           ++ +        S             +    LRE  +          LQ + + L     
Sbjct: 82  RELSEQLLLHDNSNGAPSLYDETTNANSAAILRERVI---------RLQAENECLLAGNM 132

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
            ++E   L   L S  V+++    E            + LK+L+  +         ++  
Sbjct: 133 ADDEKLGLKEELNSLTVQKRNLETELKLAHNKSDDLRKRLKELNAIIESGN--FVNSDRL 190

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA---------EKTAILISIL 621
             +     +  + + +    L +   ++E+QIA+  A  E           +   L   +
Sbjct: 191 TEEQTARERMIIQIAQLEARLEQATRDLEQQIAEKKALNEELTLSKQQVKNEKDRLTHYM 250

Query: 622 HEVHIQIHQIESQEAMIEGFGKMS 645
            +    I  +E Q   +EG G +S
Sbjct: 251 EKARRMIEDLEEQNRAVEG-GALS 273


>gi|254241789|ref|ZP_04935111.1| hypothetical protein PA2G_02502 [Pseudomonas aeruginosa 2192]
 gi|126195167|gb|EAZ59230.1| hypothetical protein PA2G_02502 [Pseudomonas aeruginosa 2192]
          Length = 479

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 81/255 (31%), Gaps = 16/255 (6%)

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454
           ++            +N    I+D  LR      + D      +    + +     W    
Sbjct: 127 WHQMHLWDPESSAGRNHFVLIRDA-LRRNQLGLLVDEEPAAVEPQRLQMAAE-EQWYAAG 184

Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA-----ILQEQYQELADIR 509
               +  P++   +    +     +   ++   L  L          + ++  +ELA   
Sbjct: 185 PAAPKAPPAEPPRKQEDEQTARLAQLVKQQRQQLAALARQQEQRLAGLARQHEEELARRE 244

Query: 510 YDNN-ELQKLWSFLFSD--FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            D   +L  L S + S    +E++     E+ QRL E+G  +  +  +   R        
Sbjct: 245 QDARGQLDILRSEVLSLQQALERQAREKAELQQRLLEQG-EQFQRNREELTRQLRFIENQ 303

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
                  +R  +   L        ++  KE++   I  V      E    L   L E+  
Sbjct: 304 GRNETDLLRSEFADELEARV-AAAVAGYKEQV--SIRDVELAYRNELDQQLEQELAELRA 360

Query: 627 QIHQI--ESQEAMIE 639
           +  ++  +  E ++E
Sbjct: 361 ERDRLAAQGPEQLLE 375


>gi|124248388|gb|ABM92814.1| IP16819p [Drosophila melanogaster]
 gi|124248394|gb|ABM92817.1| IP16919p [Drosophila melanogaster]
          Length = 759

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 86/272 (31%), Gaps = 32/272 (11%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-----DQKLRYYYSQAIRDR 431
           +     + L + E +       + +   ++      + ++      ++ +  Y   +  +
Sbjct: 178 QRQQEKEYLHRTELKQAEEKLMEVQLRAKLKFCELESQLRAKDEESKQAQEAYRMEVSHK 237

Query: 432 LQQLFQKYITEHSGYGRYWKKNAR-HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           L    +   T          +  +   +++G  + L++   +      + + RE  L+  
Sbjct: 238 LALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENIHTARLAEANQREQDLI-- 295

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR-------LCE 543
                  ++   +EL  ++  N E  +    +    + Q          +       L +
Sbjct: 296 -----DRVKSLTKELNTLK-ANKEHNE-RDLMDRLALSQDEISVLRTSSQRRSPCTSLPD 348

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE--EIEKQ 601
               E L +L  +           +A I  + +     +   +    LS +    E + +
Sbjct: 349 NASAE-LNRLTSEADSLRCVLELKQAEISALSKAKADLIHESEERLKLSNRVALLEAQNE 407

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           + +   + + EK         E+  ++ +++ 
Sbjct: 408 MLRTELEAKTEKE-------KEIQQKMEELQK 432



 Score = 37.9 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 40/114 (35%), Gaps = 3/114 (2%)

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
             ++      E + + L ++G   + +Q +++           E  +    +   +   L
Sbjct: 153 LLLQHTQKDCERLREDLEDKGLEWIQRQQEKEYLHRTELKQAEEKLMEVQLRAKLKFCEL 212

Query: 585 YKRFRLLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             + R    + ++ ++            + E        + E+  ++ Q+E++E
Sbjct: 213 ESQLRAKDEESKQAQEAYRMEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEE 266


>gi|6752413|gb|AAF27717.1|AF071823_1 PspA [Streptococcus pneumoniae]
          Length = 463

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 14/129 (10%)

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
           L+ L+        E       E+ +RL         +                + N    
Sbjct: 207 LKALYDEAVKSLGESN-----ELTRRLATEYSNNHDEFQALYESTQEQIEELKDYNEQIS 261

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA---------KGEAEKTAILISILHEVH 625
                  LA+  +   L  +  E EK++A              G+ +K   L +   E+ 
Sbjct: 262 EGEETLILAIQNKISDLDDKIAEAEKKLADSQNGEGVEDYWTSGDEDKLEKLQAEQDELQ 321

Query: 626 IQIHQIESQ 634
            ++ Q+  +
Sbjct: 322 AELDQLLDE 330


>gi|73969651|ref|XP_538496.2| PREDICTED: similar to Hook-related protein 1 isoform 1 [Canis
            familiaris]
          Length = 2030

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 70/230 (30%), Gaps = 17/230 (7%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    +     L+Q   +   +     +  K+  +  + K  +       +   +   K 
Sbjct: 809  RLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENNVKIGNLEKENKT 868

Query: 481  SLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              +E ++   + +    + +E  + +     D   L  L   L S          E++  
Sbjct: 869  LFKEISIYKESCVRLKELEKENKELVKRATIDIKTLVTLREDLVS----------EKLKT 918

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
            +       +L  +L++   +        ++      +  +  L    +  L   + +E +
Sbjct: 919  QQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDSRYKLLESKLESTLKKSL---EIKEEK 975

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIEGFGKMSG 646
                +   +        L   L  V      + Q + +E M++     SG
Sbjct: 976  IAALEARLEESTNYNQQLRQELKTVKKNYEALKQRQDEERMVQSSPPTSG 1025



 Score = 37.6 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 56/159 (35%), Gaps = 26/159 (16%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--RLCERGFGELLKQLDRQ 556
           +E  + +  + +D      + + +      Q+     +  +   + +     LLK +   
Sbjct: 139 EEFIERIQGLDFDTKA--AVAAHIQEVTHNQENVFDLQWMEVTDMSQEEIEPLLKNMALH 196

Query: 557 VRDAGLWSATTEANIVDVRQGYQQA------------------LALYKRFRLLSRQKEEI 598
           ++            IV++ +                       +   +  + LS +  + 
Sbjct: 197 LKRLIDERDEHSETIVELSEERDGLHFLPHASSSAQSPCGSPGMKRTESRQHLSVELADA 256

Query: 599 EKQIAQVTAKGEAEKTAILI---SILHEVHIQIHQIESQ 634
           + +I ++  + E EKT  L+     L ++ I++ +++ +
Sbjct: 257 KAKIRRLRQELE-EKTEQLLDCKQELEQMEIELKRLQQE 294



 Score = 37.6 bits (85), Expect = 7.0,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 99/343 (28%), Gaps = 46/343 (13%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
           +   +   K ++++   +I   +      +  +D         K   EK I       + 
Sbjct: 497 EKENQRLSKKVEILENEIIQEKQSLQNCQNLSKD-----LMKEKAQLEKTIETLRENSER 551

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
             K   +          +  +    +    +KD            ++  ++  + I E S
Sbjct: 552 QIKILEQENEHLNQTVTSLRQRSQISAEARVKD-----------IEKENKILHESIKETS 600

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                 +   R   ++    +       + +       +E  LL   I +  I  E+ + 
Sbjct: 601 SKLSKIEFEKRQIRKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEA 660

Query: 505 LADIRYDNN-ELQKLWS----------FLFSDFVEQKYFLPEEIHQR------------- 540
           L     +   E +KL             L S   E      E +  R             
Sbjct: 661 LEQENSELERENRKLKKTLDGFKNLTFQLESLEKENSQLDEENLELRRNVESLKCASMKM 720

Query: 541 ----LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
               L  +      +QL + +         TE   V  +    +   L K     +++ +
Sbjct: 721 AQLQLENKELESEKEQLKKGLELMKASFKKTERLEVSYQGLDTENQRLQKALENSNKKIQ 780

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           ++E ++  +  +   +     +  L     ++ Q+E +   +E
Sbjct: 781 QLESELQDLEVEN--QTLQKNLEELKISSKRLEQLEKENKSLE 821


>gi|15598287|ref|NP_251781.1| hypothetical protein PA3091 [Pseudomonas aeruginosa PAO1]
 gi|218890709|ref|YP_002439573.1| hypothetical protein PLES_19691 [Pseudomonas aeruginosa LESB58]
 gi|254236062|ref|ZP_04929385.1| hypothetical protein PACG_02020 [Pseudomonas aeruginosa C3719]
 gi|9949200|gb|AAG06479.1|AE004733_6 hypothetical protein PA3091 [Pseudomonas aeruginosa PAO1]
 gi|126167993|gb|EAZ53504.1| hypothetical protein PACG_02020 [Pseudomonas aeruginosa C3719]
 gi|218770932|emb|CAW26697.1| hypothetical protein PLES_19691 [Pseudomonas aeruginosa LESB58]
          Length = 479

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 74/258 (28%), Gaps = 22/258 (8%)

Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD--------RLQQLFQKYITEHSGY 446
           ++            +N    I+D   R      + +        RLQ   ++        
Sbjct: 127 WHQMHLWDPESSAGRNHFVLIRDALRRNQLGLLVDEEPAAVEPQRLQMAAEEQWYAAGPA 186

Query: 447 GRYWKKNARHRDQKGPSQRLMQS--SLVKGKLSKKPSLREAALLLTLINHPA-ILQEQYQ 503
                     R Q+      +       + +L+     +E  L      H   + + +  
Sbjct: 187 APKAPPAEPPRKQEDEQTARLAQLVKQQRQQLAALARQQEQRLAGLARQHEEELARREQD 246

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
               +    +E+  L   L     E       E+ QRL E+G  +  +  +   R     
Sbjct: 247 ARGQLDILRSEVLSLQQALERQAREN-----AELQQRLLEQG-EQFQRNREELTRQLRFI 300

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
                     +R  +   L        ++  KE++   I  V      E    L   L E
Sbjct: 301 ENQGRNETDLLRSEFADELEARV-AAAVAGYKEQV--SIRDVELAYRNELDQQLEQELAE 357

Query: 624 VHIQIHQI--ESQEAMIE 639
           +  +  ++  +  E ++E
Sbjct: 358 LRAERDRLAAQGPEQLLE 375


>gi|41386711|ref|NP_777152.1| myosin-7 [Bos taurus]
 gi|75055810|sp|Q9BE39|MYH7_BOVIN RecName: Full=Myosin-7; AltName: Full=Myosin heavy chain 7; AltName:
            Full=Myosin heavy chain slow isoform; Short=MyHC-slow;
            AltName: Full=Myosin heavy chain, cardiac muscle beta
            isoform; Short=MyHC-beta
 gi|13560273|dbj|BAB40922.1| myosin heavy chain slow [Bos taurus]
          Length = 1935

 Score = 38.7 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1566 NQIKAEMERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++  S Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1626 EIQLSHANRLAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1685

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      E    +L  +++  V
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMEADLSQLQTEVEEAV 1745

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1746 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1806 KGGKKQLQKLEARVRELENELEAEQKRNA 1834


>gi|332361745|gb|EGJ39549.1| DNA repair protein RecN [Streptococcus sanguinis SK1056]
          Length = 559

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 84/243 (34%), Gaps = 38/243 (15%)

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ----KGPSQRLMQSSLVKGKLSKKPSLR 483
           ++ R Q+ F +Y +         K    H+ +    +     +  ++L  G+ +     R
Sbjct: 157 LKGRYQETFDRYRSLRKQVLTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQER 216

Query: 484 EAAL-----------LLTLINHPAI-----LQEQYQELADIRYDNNELQKLWSFLFS--D 525
           +  L             T++++        ++    +L  I   +   ++L   L     
Sbjct: 217 DRLLNHKLIADTLTNAYTMLDNEDFSSLTNVRSAMNDLESIEDYDPAYKELSGSLSETYY 276

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            +E      E+I   L   G   L  Q++ ++      +      + D+   + Q    Y
Sbjct: 277 VLEDVSKRLEDILDGLDFDGDRLL--QVESRLDLINSITRKYGGQVDDLLDYFAQISKEY 334

Query: 586 --------------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                         +  + L R+  E+ ++++Q      A+  A +   L +++++  + 
Sbjct: 335 SLLTGSNLSSEDMDRELKALERELVELAQELSQARHGLAAQLEAEIKQELQDLYMEKARF 394

Query: 632 ESQ 634
           + Q
Sbjct: 395 KVQ 397


>gi|306921409|dbj|BAJ17784.1| coiled-coil domain containing 91 [synthetic construct]
          Length = 441

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 85/247 (34%), Gaps = 18/247 (7%)

Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
                 I   +++   S+  + R++Q  +  + +H+   + + K           +    
Sbjct: 132 IQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKEL 191

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAIL----QEQYQELADIRYD---------NNEL 515
               K +L         AL + +  + A+L    ++Q + +                  L
Sbjct: 192 QEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQYISAIEKQAHKCEELL 251

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRL--CERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
                 L      +K  L E+I + L    +   E+L++   + R     +  + A +  
Sbjct: 252 NAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLE- 310

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIE-KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            ++  + A+         + +K   E +++ +     + EK +  I    +   +I Q  
Sbjct: 311 -KEAMKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQET 369

Query: 633 SQEAMIE 639
            + A+IE
Sbjct: 370 VKAAIIE 376


>gi|297283418|ref|XP_001098863.2| PREDICTED: periplakin-like [Macaca mulatta]
          Length = 1761

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 32/320 (10%), Positives = 92/320 (28%), Gaps = 18/320 (5%)

Query: 324  DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
            D        + +  +L           V   R +  +   +       +    + +   +
Sbjct: 1286 DTKPQVQTKEVVQEILQFQEDPQTKEEVESLRAKLSEEQKKQVDLEREKASQEKQIAQKE 1345

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
                R  E           E            +   +       +R  L++L ++     
Sbjct: 1346 EELSRVKERVVQQEVVRYEEEPGLRAEVSAFAESIDVELRQIDKLRAELRRLQRRRTELE 1405

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL----SKKPSLREAALLLTLINHPAILQ 499
                   ++    R+ +   QRL Q      +      +K + ++  +L      P   +
Sbjct: 1406 RQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTRKQKVVLQ---QDPQQAR 1462

Query: 500  EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
            E    L  ++ +  + ++         +E +          L +    E +   +    +
Sbjct: 1463 EH--ALLRLQLEEEQHRR-------QLLEGELEPLRRKLAALEKAEVKEKVVLSESIQVE 1513

Query: 560  AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAIL 617
             G      +    ++ +  +    L      L  +  E+E   ++ + + +   E+   L
Sbjct: 1514 KGDTEQEIQRLKSNLEEESRSKRELDVEVSRLEARLAELEFHNSKSSKELDFLREENHKL 1573

Query: 618  ISILHEVHIQIHQIESQEAM 637
                  + ++  +++S+  M
Sbjct: 1574 QLERQNLQLETRRLQSEIDM 1593


>gi|296225509|ref|XP_002758522.1| PREDICTED: sarcolemmal membrane-associated protein isoform 3
           [Callithrix jacchus]
          Length = 790

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 87/263 (33%), Gaps = 9/263 (3%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
           K+       +    + E +       +   + +           D         A++++L
Sbjct: 322 KVAEGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDFTNERLTALQEKL 381

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
             + + ++T+     +  K+N     +   S  L  S       +    + E  L   L 
Sbjct: 382 --IVEGHLTKAVEETKLSKENQTKAKESDLSDTLSPSKEKSSDDTTDAQMDEQDLNEPLA 439

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV-----EQKYFLPEEIHQRLCERGFG 547
               +  +     ++I     E+Q L   L          +QK F  + + +    + + 
Sbjct: 440 KVSLLKDDLQGAQSEIE-AKQEIQHLRKELIEAQELARTSKQKCFELQALLEE-ERKAYR 497

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
             +++  +Q++           NI ++R+   + +   +   L ++ +  +  Q A+  A
Sbjct: 498 NQVEESTKQIQVLQAQLQRLHINIENLREEKDREITSTRDELLSAQDEILLLHQAAEKAA 557

Query: 608 KGEAEKTAILISILHEVHIQIHQ 630
                  A L   L +V  ++ +
Sbjct: 558 SERDTDIASLQEELKKVRAELER 580


>gi|296195569|ref|XP_002745400.1| PREDICTED: chromosome-associated kinesin KIF4A-like [Callithrix
           jacchus]
          Length = 1231

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 85/264 (32%), Gaps = 21/264 (7%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437
           +   +    +++ E        +   +E         + ++      ++  R  L  L +
Sbjct: 710 ANKRLKDALQKQQEVVDKRKETQSRGMESTAARVKTWLGNEIEVMVSTEEARRHLNDLLE 769

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
                     +  KK       + P  +L + +    +   + S  E ++          
Sbjct: 770 DRKILAQDVAQLKKK---KESGENPPPKLRRCTFSLTEGHAQVSESEDSI---------- 816

Query: 498 LQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
             +Q + L  ++ + N ++  L   L     E +    +              LK L  +
Sbjct: 817 -TKQIESLETEMEFRNAQIADLQQKLIDAESEDRP--KQRWENIATIVEAKCALKYLIGE 873

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-EIEKQIAQVTAKGEAEKTA 615
           +  + +     E+++   +             +    Q E E++ ++ ++  +   EK  
Sbjct: 874 LVSSKIQVIKLESSLKQSKASCADMKKTLFEEQNHFAQIETELQAELVRMEQQH-QEKVL 932

Query: 616 ILISILHEVHIQIHQIESQEAMIE 639
            L+  L     Q+ + + +E++ E
Sbjct: 933 YLLGQLQ--QSQMAEKQLEESISE 954



 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 77/231 (33%), Gaps = 20/231 (8%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + +   +  +      E           +        + R  Q S    +L+K  +L+EA
Sbjct: 479 ETVACMVAAIDTVVEQEAQVETSPEMSRSSDGFTTQHALRQAQMSKELIELNKALALKEA 538

Query: 486 ALLLTLINHPAILQ----EQYQELADIRYDNNELQKLWSFL-FSDFVEQKYFLPEEIHQR 540
            L   +  + + LQ    +    +  +  +   LQK    L       +K     ++ + 
Sbjct: 539 -LARKMTQNDSQLQPIQFQYQDNIKGLELEVINLQKEKEELVLEVQTAKKDVNQAKLSEH 597

Query: 541 LCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
             +  +     +  L +++ +        E+    V +  Q+   +  +   L RQ +E 
Sbjct: 598 RRKRLQELEGQIADLKKKLNEQSKLLKLKESTEHTVTKLNQEIRMMKNQRVQLMRQMKED 657

Query: 599 EKQIAQVTAKGEAEKTA----------ILISILHEVHIQ--IHQIESQEAM 637
            ++  Q   K + E              L+ +   +  Q  + + +++EA 
Sbjct: 658 AEKFRQWKQKKDKEVIQLKERDRKRQYELLKLERNLQKQSNVLRRKTEEAA 708


>gi|284924503|emb|CBG37639.1| putative helicase [Escherichia coli 042]
          Length = 963

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/224 (8%), Positives = 59/224 (26%), Gaps = 10/224 (4%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              +      + +    E   + + + +      +            ++  + +     E
Sbjct: 203 LMELYGMSTLIDEHTFGEVKAFRKQYMQADSDIAELKGRLSRFIKRTLRKNVLEYIKYTE 262

Query: 485 AALLLTLI----NHPAILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKY----FLP 534
              +            + +   + L            + L   +    +           
Sbjct: 263 RKAITIPFYPSEQEQDLYERVQKLLEREDSYALPKRHRHLTGLILRKLLSSSTKAVLNNL 322

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           + +  RL       +++     ++   +     +  + D                 L  +
Sbjct: 323 QILKTRLERLKLEGIVEDDMDIIQQIIMDDDLEDDIVEDAESVAPDTECKSVDSDALQAE 382

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
             E+E  I +    G   K+  L+S L +   Q+ ++ + + +I
Sbjct: 383 INELESLIVKAEQIGTDTKSKELLSGLEQGFAQLAEMGAAKKVI 426


>gi|223940708|ref|ZP_03632547.1| hypothetical protein Cflav_PD0184 [bacterium Ellin514]
 gi|223890635|gb|EEF57157.1| hypothetical protein Cflav_PD0184 [bacterium Ellin514]
          Length = 274

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 43/112 (38%), Gaps = 8/112 (7%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---- 578
               +  +     ++   L + G  E L + +  ++ A   +A  +A I ++        
Sbjct: 69  LEKDLAARKSDISKLSNDLTQTG--ENLNKTEAALKSALEETAKRDAKIAELESQKETLD 126

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           +QA+ L      L  Q  + +K+++   ++G+       +  L     ++ +
Sbjct: 127 KQAVDLKSSISGLENQIADTQKKLSA--SEGDKAFLEKELKRLMAEKAELER 176


>gi|156064959|ref|XP_001598401.1| hypothetical protein SS1G_00490 [Sclerotinia sclerotiorum 1980]
 gi|154691349|gb|EDN91087.1| hypothetical protein SS1G_00490 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 2405

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 37/371 (9%), Positives = 100/371 (26%), Gaps = 19/371 (5%)

Query: 284  LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343
            +++ +A      +       E     +      +    +      +   + ++ +   L 
Sbjct: 1926 IAVLKASRAEQFARSQAKEAEETCAEIMSERQHMDEIIEDLQKQNQRYEEKLEDLSSDLD 1985

Query: 344  PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE--- 400
               +    L    ED     R       E  + ++       +   T        ++   
Sbjct: 1986 AAVQARKRLQHELED-YRSQRAMEIEDKESSMEQTRKKYQAEFATLTNELDIAREEKLFK 2044

Query: 401  ---RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457
                  L   L    +   D+ L        + RL+                  +     
Sbjct: 2045 QSENTRLREELDQLRSKWDDEVLNSSTWSKEKARLEATLSDLNVSRDEAVNAHNEAQGKI 2104

Query: 458  DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE-LQ 516
                   R +++ +      +    RE   L   +       +           N   + 
Sbjct: 2105 VSLLAQVRSLRTDVDDAAAERDILQREKRGLQARLEEAKAGLDDLARSDSPALRNAAGMD 2164

Query: 517  KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD-VR 575
            +    L S+  +Q+      I +          +++     R+        +A +   ++
Sbjct: 2165 REILELKSNLAQQEDIAAAAIGKMRRSEALASEIQKDIVAERETTAQLNKEKAALEKSLK 2224

Query: 576  QGYQQALALYKR--------FRLLSRQKEEIEKQIAQVTAKGEA-EKTAILISI-LHEVH 625
            +   + L L  +         R L  + +E+E Q+    ++    +++   +   + ++ 
Sbjct: 2225 ETQVRLLDLETKGYSSASQDVRFLHGRVQELEAQLDAQESERNKSQRSERNVDRTVKDLQ 2284

Query: 626  IQIHQIESQEA 636
             QI + E   A
Sbjct: 2285 QQIERKEKANA 2295


>gi|149738024|ref|XP_001500961.1| PREDICTED: golgi autoantigen, golgin subfamily a, 2 isoform 2
           [Equus caballus]
          Length = 991

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 56/146 (38%), Gaps = 9/146 (6%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E+   ++ ++     L +L + +     ++    P E+ QRL      +L K++  
Sbjct: 414 ELREEKECSMSQVQVLETSLAELRNQIAVPPPQEPPAGPSEVEQRLQ-AEAEQLQKEVKS 472

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
                       E+     ++   + L L +       Q E+ ++ +  +   G+    +
Sbjct: 473 LAGQLQAQVQDNESLSRLNQEQELRLLELQRAAESWDEQVEQHKRLLETME--GDRSTIS 530

Query: 616 ILISILHEVHIQIHQIESQEAMIEGF 641
             +S   E+  Q+ +++      +GF
Sbjct: 531 RALSQNRELKSQLAELQ------DGF 550


>gi|114626405|ref|XP_001159246.1| PREDICTED: centrosomal protein 110kDa isoform 2 [Pan troglodytes]
          Length = 2201

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/299 (10%), Positives = 79/299 (26%), Gaps = 29/299 (9%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK----DQ 418
           +R +     +    E           E  +       +        K     I+     +
Sbjct: 429 LRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISE 488

Query: 419 KLRYYYSQAIRDRLQ-------QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
             +    + +  RLQ       +     +           K    +D +     L     
Sbjct: 489 AGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDP 548

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
               +  +   +E  L +    +  +     + L+ I  +  E++ L   L    +    
Sbjct: 549 KHSHMKAQKRGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANE 608

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-------DVRQGYQQALAL 584
            L +++   +   G  E L  +  Q   A                   +V Q   Q   +
Sbjct: 609 ALKKDLEGVIS--GLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIV 666

Query: 585 YKRFRLLSRQKEEIEKQIAQVTA--------KGEAEKTAILISILHEVH-IQIHQIESQ 634
                 + ++  E+E  + +           +G+       +     +   + +Q++ +
Sbjct: 667 AMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEE 725


>gi|332265072|ref|XP_003281550.1| PREDICTED: cytospin-B isoform 4 [Nomascus leucogenys]
          Length = 709

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 91/280 (32%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   ++  TE+    
Sbjct: 415 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLERLKTENGSLK 474

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   Q    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 475 SHLQGEKQKATQASAVEQTAES--CEVQEMLKVARAEKDLLE--LSCSELRQELLKANGE 530

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 531 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 590

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + E    
Sbjct: 591 VEQHRAVKLHNNQLISELESNVIK----------LEEQKSDLERQLKTLTKQMKEETEEW 640

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 641 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 680


>gi|308471073|ref|XP_003097768.1| CRE-DYF-14 protein [Caenorhabditis remanei]
 gi|308239306|gb|EFO83258.1| CRE-DYF-14 protein [Caenorhabditis remanei]
          Length = 1985

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 95/299 (31%), Gaps = 36/299 (12%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           E        + +++ +   E +      +        +      KD+  R  + +   D 
Sbjct: 499 EAHRQHKTFIEELMIRHREELKEREDTHDEILRARETEEKSRFEKDRAEREKFRKE-SDE 557

Query: 432 LQQLFQKYITEHSGYG---------------RYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           L++  +    + +                     +   +   ++  + +           
Sbjct: 558 LRETQRNLKGDVAAMKTDLDDKTLRLDMVETERDELRKKLDSERAQADQRDLEISECRTK 617

Query: 477 SKKPSLREAALLLTLINHPAIL--QEQYQELADIRY--DNNELQKLWSFL--FSDFVEQK 530
             +   +EA L   L    A +   E   +L++ ++    NE+  L   L   ++ +E K
Sbjct: 618 LDEMQEKEAELRRELAECQATITAMEGEGKLSEEQFLESKNEMSTLAEQLEGLNNELESK 677

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
                 +   + E+        +      +   +AT E    ++     +   L+++   
Sbjct: 678 NEEIRNLQSSIQEKEV-----HIQNVRTSSHQLTATYEEANGEIEILKGELSRLHEQLNE 732

Query: 591 LSRQKEEIEKQIAQVTAKGE---------AEKTAILISILHEVHIQIHQIESQEAMIEG 640
            +RQ  E  ++      K +          EK  +L + L E+  +  + E +EA + G
Sbjct: 733 RTRQISEANEKFDDAVRKNDALAEDSASWQEKCEVLKNELEELRKRGVEKEREEAELRG 791



 Score = 37.2 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 83/253 (32%), Gaps = 34/253 (13%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-----SQRLMQSSLVKGKLSKKPS 481
            +  ++++L      E        ++  + RD+         +R       + K S   S
Sbjct: 397 DVARKMRKLLTNKNGEIDESREAARQAEKERDRAKKDLEKEEKRRKDDREAERKRSSVYS 456

Query: 482 LREAALLLT---------LINHPAILQEQYQELA-----DIRYDNNELQKLWSFLF---- 523
            RE  L             I +    +E  ++L       +   + + +     L     
Sbjct: 457 QREHDLKKLEDDLRKASEKIRNLEEQRESQEKLTTSVQNSLNEAHRQHKTFIEELMIRHR 516

Query: 524 SDFVEQKYFLPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
            +  E++    E +  R  E    F +   + ++  +++     T      DV       
Sbjct: 517 EELKEREDTHDEILRARETEEKSRFEKDRAEREKFRKESDELRETQRNLKGDVAAMKTDL 576

Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEA---------EKTAILISILHEVHIQIHQIE 632
                R  ++  +++E+ K++    A+ +           K   +     E+  ++ + +
Sbjct: 577 DDKTLRLDMVETERDELRKKLDSERAQADQRDLEISECRTKLDEMQEKEAELRRELAECQ 636

Query: 633 SQEAMIEGFGKMS 645
           +    +EG GK+S
Sbjct: 637 ATITAMEGEGKLS 649



 Score = 37.2 bits (84), Expect = 8.9,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 76/251 (30%), Gaps = 15/251 (5%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448
           E+   +     ER   +  L+      KD +       ++  + +   +K   +      
Sbjct: 415 ESREAARQAEKERDRAKKDLEKEEKRRKDDREAERKRSSVYSQREHDLKKLEDDLRKASE 474

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508
             +     R+ +      +Q+SL +     K  + E      +I H   L+E+       
Sbjct: 475 KIRNLEEQRESQEKLTTSVQNSLNEAHRQHKTFIEE-----LMIRHREELKERED----- 524

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
              ++E+ +          E+     E+  +        E  + L   V          +
Sbjct: 525 --THDEILRARETEEKSRFEKDRAEREKFRK--ESDELRETQRNLKGDVAAMK-TDLDDK 579

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
              +D+ +  +  L            + ++E    +       EK A L   L E    I
Sbjct: 580 TLRLDMVETERDELRKKLDSERAQADQRDLEISECRTKLDEMQEKEAELRRELAECQATI 639

Query: 629 HQIESQEAMIE 639
             +E +  + E
Sbjct: 640 TAMEGEGKLSE 650


>gi|301769005|ref|XP_002919934.1| PREDICTED: fas-binding factor 1-like [Ailuropoda melanoleuca]
          Length = 1155

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 77/232 (33%), Gaps = 18/232 (7%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSG-----YGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
            R    QA+++RL Q  +    E S           + N + R  +    R+         
Sbjct: 800  RDQQLQALQERLGQQRRDMEEERSHLQEVIGKMEARLNEQSRLLEQERWRVTAEQSKAES 859

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN-----NELQKLWSFLFSDFVEQ- 529
            + +    +   ++  +      L++    L + +         E ++L +     + +Q 
Sbjct: 860  MQRALEEQRKIMVQQISMEREELEKAKSALLEEQKSVMHKCGEERRRLAAEWAEFYAQQK 919

Query: 530  --KYFLPEEIHQRLC-ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
              K     E  + L  +      L  L ++  +  + ++   A    +    ++AL   +
Sbjct: 920  LSKERAEREAERALQMDSQREGTLVSLAKEQAELKIRASELRAKEEQL-AAEREALERER 978

Query: 587  RFRLLSRQK---EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            +   L +++     +  ++     +  ++  +           +  +++ ++
Sbjct: 979  QELRLEKERVSAAALRTRLRAQEVESMSQVASEKFEEGQRALREARRVQQEQ 1030


>gi|300814948|ref|ZP_07095176.1| DNA repair protein RecN [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300510918|gb|EFK38190.1| DNA repair protein RecN [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 555

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 85/272 (31%), Gaps = 13/272 (4%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
              I          L+ +              N      + + + E  L +  N  ++  
Sbjct: 130 HESISLMNHDNQRNLLDDFCDNKHKENLLLLRNLVHEINELKKDYENKLDSSTNKDREID 189

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           +  Y    I +    L      E               +    +  +++S+     +   
Sbjct: 190 ILNYQINEINE--ANLTSYDDKELEEDYLKLNNVTSTAEALSKTINILKSNYEGFNVEDG 247

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  +  +++ +   L++ Y EL D+R+    L++L + +   ++    F  +++H+
Sbjct: 248 LDSAIGEV-NSILKYNNELKDDYDELEDVRF---RLKELINSI-ESYMNNLNFDGQKLHE 302

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                     L  ++R     G      +  +   ++     L   K    L +  +E E
Sbjct: 303 ------LESRLDLVNRLKSKYGKSIDEIDIFLESTQKRLDFLLNSEKNLEQLKKIIQEKE 356

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
           ++   +       +  +   +  ++  ++ ++
Sbjct: 357 EKALYLAQNISQARGKLAEDLRKKISNELEEL 388


>gi|302695121|ref|XP_003037239.1| hypothetical protein SCHCODRAFT_103871 [Schizophyllum commune H4-8]
 gi|300110936|gb|EFJ02337.1| hypothetical protein SCHCODRAFT_103871 [Schizophyllum commune H4-8]
          Length = 969

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 71/192 (36%), Gaps = 14/192 (7%)

Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
           +K    ++ +      +++   + + +++ S  + AL+ TL      L +  +E+   R 
Sbjct: 341 EKEKALQELEATKTSTLEAVKAELEAAREASTAQQALVATL---QDNLAKLEEEVNAART 397

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
           +  EL+        D         E +     ++    + ++ +              A 
Sbjct: 398 NLQELRSTNDAASGDVAAAAAVDREALLAA--QKNLAAIQEEAEALKAAQAEREEVHAAK 455

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEE-------IEKQIAQVTAKGE--AEKTAILISIL 621
           + ++ +    A  L ++ + L  +K+E       +E +I ++    +   ++     + L
Sbjct: 456 VKELEEKAASATELEQQLKALKEEKQETADKISELEIEILELKEAQDGFEDERTTAANKL 515

Query: 622 HEVHIQIHQIES 633
             +  Q+ + +S
Sbjct: 516 KALEAQLEEAKS 527


>gi|297696405|ref|XP_002825384.1| PREDICTED: LOW QUALITY PROTEIN: spectrin beta chain, brain 4-like
            [Pongo abelii]
          Length = 3674

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 43/113 (38%), Gaps = 2/113 (1%)

Query: 524  SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQA 581
                + +     ++  +L  R   E+     R+ +    W++  +         +G  + 
Sbjct: 2307 DTVGDARIRSISDLSLQLKNRDPEEVKIICQRRSQLNNRWASFHDNLLRYQQQLEGALEI 2366

Query: 582  LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             AL +    ++ + +E E  I  +    + E    L+    E+  ++H I++Q
Sbjct: 2367 HALSRELDNVTERIQEKEALIQALDCGKDLESVQRLLRKHEELEREVHPIQAQ 2419


>gi|293358957|ref|XP_575675.3| PREDICTED: EF-hand calcium binding domain 4B [Rattus norvegicus]
          Length = 803

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 512 NNELQKLWSFLFSDFVEQKYFLPE----EIHQRLCERG------FGELLKQLDRQVRDAG 561
           + + +  +  L      QK    E    ++  +L +        F +LL  +  Q+++A 
Sbjct: 224 DQDEEAQFQMLMDRLGAQKILDDESDVRQLWLQLKKDEPHLLSNFEDLLTTIFTQLQEAH 283

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621
                 E  +      Y + +     +  + +Q +   +Q      +    ++  L   L
Sbjct: 284 EQKNELECALRKKIAAYDEEIQHL--YEEMEQQIKSEREQFLLKDTERFQARSRELEKKL 341

Query: 622 HEVHIQIHQIESQEAMIEG 640
                ++ ++  ++  +EG
Sbjct: 342 SAKEQELERLNQKQRRLEG 360


>gi|218248343|ref|YP_002373714.1| hypothetical protein PCC8801_3596 [Cyanothece sp. PCC 8801]
 gi|218168821|gb|ACK67558.1| conserved hypothetical protein [Cyanothece sp. PCC 8801]
          Length = 1635

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 69/220 (31%), Gaps = 32/220 (14%)

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            I     +   +  + +RL+ +   +  +     +          +   SQR +  +LV 
Sbjct: 379 SIYSHHEKDIKNSDLFERLESILSHFPEKE----KELPPIVWDWIKLKVSQRTVAGALVN 434

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
               + P    + +    +  P       ++LA I+      Q++   LFS   +   ++
Sbjct: 435 NLGERTPK---SLIPYLSLCEPYTRANIAEKLAKIQ---PWDQEIRETLFSLIGDSSQWV 488

Query: 534 PEEIHQRLCE----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
            E++ Q+L +          L+ L  +          T     D  +    A  L K  +
Sbjct: 489 REKVIQQLSKVKITPEEAIYLETLLNRKSGDLRRGILTLLLNQDDTESIVAAERLLKSKK 548

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           LL RQ                      L+  + +   QI 
Sbjct: 549 LLQRQ------------------AGLELLQEMIQQKRQIE 570


>gi|194670275|ref|XP_615468.4| PREDICTED: Temporarily Assigned Gene name family member
           (tag-241)-like [Bos taurus]
 gi|297478422|ref|XP_002690097.1| PREDICTED: Temporarily Assigned Gene name family member
           (tag-241)-like [Bos taurus]
 gi|296484248|gb|DAA26363.1| Temporarily Assigned Gene name family member (tag-241)-like [Bos
           taurus]
          Length = 950

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 22/197 (11%)

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPA 496
             + +   +   +      +       + S L KG+    PS REA L   L  +     
Sbjct: 541 RKKMAKIDKEKDRFEHELQKYRSFYGDLDSPLPKGEAGGPPSTREAELKLRLRLVEEEAN 600

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           IL  +  EL        E + L + L     +        +      R   E L +L + 
Sbjct: 601 ILGRKIVELEV------ENRGLKAELDDLRGDDFNGSANPLM-----REQSESLSELRQH 649

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           ++     +     N+ D+ +  ++  A   +++         +    +     ++ KT  
Sbjct: 650 LQLVEDETELLRRNVADLEEQNKRITAELNKYKY--------KSGGHESARHHDSAKTEA 701

Query: 617 LISILHEVHIQIHQIES 633
           L   L    +QI+++  
Sbjct: 702 LQEELKAARLQINELSG 718


>gi|156096823|ref|XP_001614445.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148803319|gb|EDL44718.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 784

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 44/139 (31%), Gaps = 24/139 (17%)

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
           ++ A    D+  L +L   +                    +      +K++ +  +    
Sbjct: 277 EDEAGEYLDHKGLGQLLEKIIDHLNVN------------LKEAMNRYVKEIHKLNKANDA 324

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA------------QVTAKGE 610
            S   E  + +  +  Q+   L KR   +  +K E+ K+I             +   + +
Sbjct: 325 LSRNLETAVENNDEQAQEIRDLNKRISQIEEEKTEMNKRIESYEFTMHKTKKLKNEEQDD 384

Query: 611 AEKTAILISILHEVHIQIH 629
            E    L   +  +  +++
Sbjct: 385 DEAKGALELEIKNLKRELN 403


>gi|126341294|ref|XP_001368237.1| PREDICTED: similar to vimentin [Monodelphis domestica]
          Length = 467

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 17/149 (11%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE------------ 543
            +       +  +R+   + + L + L     + K  L +   + + E            
Sbjct: 110 ELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDK 169

Query: 544 ----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                    L + + R            E     ++   Q           L R+ E ++
Sbjct: 170 ARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQ 229

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQI 628
           ++IA +    + E+   L + + E HIQI
Sbjct: 230 EEIAFLKKLHD-EEIQELQAQIQEQHIQI 257


>gi|149642927|ref|NP_001092464.1| differentially expressed in FDCP 6 homolog [Bos taurus]
 gi|148745504|gb|AAI42338.1| DEF6 protein [Bos taurus]
 gi|296474511|gb|DAA16626.1| differentially expressed in FDCP 6 homolog [Bos taurus]
          Length = 631

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 538 HQRLCERGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            Q+L E    +L  L+ L    R A       E       +  QQAL +  R    +R  
Sbjct: 350 LQQLQEEKERKLQELELLQEAQRQAERLMQEEEERRRSQHRELQQALEVQLREAEQARAS 409

Query: 596 EEIEKQIAQVTAKGEAEKTAIL---ISILHE-VHIQIHQIESQEAM 637
            + E ++ +  A  + ++   L      L E + +++   + +EA+
Sbjct: 410 MQAEMELKKEEAARQRQRIKELEEMQQRLQEALQLEVKARQDEEAV 455


>gi|114213579|gb|ABI54347.1| Abnormal dye filling protein 14, isoform b, partially confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 1911

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 39/352 (11%), Positives = 104/352 (29%), Gaps = 38/352 (10%)

Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390
           A      +             +    +D          +  E  +       +     + 
Sbjct: 238 ATLMRKAIRHAEQKNLDQKEQMKREKDDVLDETLRQLNSVTENYMKSEEKANERQRDLKR 297

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKL----RYYYSQAIRDRLQQLFQKYITEHSGY 446
           +        E+ +    +   ++ +  +      R      +  ++++L      E    
Sbjct: 298 KEDECRKLREQNDELSDILEQLSKMAHEMAGGRGRNETPMDVARKMRKLLTTKNGEIDES 357

Query: 447 GRYWKKNARHRDQKGP-----SQRLMQSSLVKGKLSKKPSLREAALLLT---------LI 492
               K+  + RD+         +R       + K S   S RE  L             I
Sbjct: 358 REAAKQAEKERDRAKKDLEKEEKRRKDDREAERKRSSVYSQREHDLKKLDDELRKASEKI 417

Query: 493 NHPAILQEQYQELA-----DIRYDNNELQKLWSFLF----SDFVEQKYFLPEEIHQRLCE 543
            +    +E  ++L       +   + + ++    L      +  E++    E +  +  E
Sbjct: 418 RNLEEQRESQEKLTISVQNSLNEAHRQHKQFIEELMIRHREELKEREDSHEEALRSKDTE 477

Query: 544 RG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
               F +   + ++  R++     T  +   DV            R  +L  +++E++K+
Sbjct: 478 ERSRFEKERSEREKIRRESDELRETQRSLKGDVAAMKTDLDDKTLRLDMLETERDELKKK 537

Query: 602 IAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
           +     + +           K   +     E+  ++ + ++    +EG GK+
Sbjct: 538 LETEREQADQRDLEIAECRAKLDEMAEKEAELRKELAEFQAIITAMEGEGKL 589


>gi|58697358|ref|ZP_00372695.1| ankyrin repeat domain protein [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536254|gb|EAL59787.1| ankyrin repeat domain protein [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 414

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 8/136 (5%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           + ++L   L     ++     E++  RL                      +  T      
Sbjct: 159 DNKELAKLLIKYGADRSLIKDEDLIDRLNSMCDQPSEVVSSTSSHSKTHNAMETPEEAEK 218

Query: 574 VRQGYQ-------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
           V++          Q     K+  LL +Q +++E + A +  K +  ++    + +  +  
Sbjct: 219 VKKSKVKLKELRTQLKDKQKKNELLKQQIQDLESEKATLKDKLDKTESQHSKTEVL-LEK 277

Query: 627 QIHQIESQEAMIEGFG 642
              ++E  ++ I G+G
Sbjct: 278 AQKELEESKSCIAGYG 293


>gi|332263419|ref|XP_003280747.1| PREDICTED: CAP-Gly domain-containing linker protein 1 [Nomascus
           leucogenys]
          Length = 1392

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 39/354 (11%), Positives = 109/354 (30%), Gaps = 12/354 (3%)

Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
           DV++L ++ ++  ++S   A+ E ++     L        +      +        +   
Sbjct: 572 DVIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENL 631

Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER 401
               +          E              E  +      +D    +       +T ++ 
Sbjct: 632 QNQQDSERSAHAKEME-ALRAKLMKVIKEKENSLEAIKSKLDKAEDQHL-VEMEDTLNKL 689

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
            E EI +K           +         +L+   +K + +     +   +     ++  
Sbjct: 690 QEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLL-DLDALQKASSEGKSEMEKLR 748

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWS 520
                 +  +   ++ K     +A+ +   +    + L    + L+++      L+K   
Sbjct: 749 QQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQ 808

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
            L   F E              +R   E + +L ++     + S+  E    ++     +
Sbjct: 809 ILKEKFAEASEEAVSV------QRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAK 862

Query: 581 ALALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIE 632
                +R   L + KE++E  I+++   +   + +   +   L      I +++
Sbjct: 863 FREKDEREEQLIKAKEKLENDISEIMKMSGDNSSQLTKMNDELRLKERYIEELQ 916


>gi|324499835|gb|ADY39939.1| Myosin heavy chain [Ascaris suum]
          Length = 1975

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 90/287 (31%), Gaps = 20/287 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                R       E L  E L   D         +  +   +  +  +      N  K ++
Sbjct: 1142 AEKSRRDLNDDLETLRTEYLEATDKTAVSLEIQKKKDGELKELKKALEAATAANESKIEE 1201

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            LR  Y +++ D  +Q+ Q+             + A   ++   +  L     +K ++ K+
Sbjct: 1202 LRQKYLRSMEDLSEQIEQQKRLRAQADKS---RRAVEAERNEIAAELTAMQSMKAEVEKR 1258

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                E+ALL        +  E  + ++ ++       +L + +     E++         
Sbjct: 1259 RKHAESALLEMTTRLKDL--EGARTISMVQLS-KAQNELEAAVKQKEEEEQNVSALLKKI 1315

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             L E+   E   QL  + R      +       ++ +  +           +  +++E+E
Sbjct: 1316 SLLEQQLAETHDQLQEETRSKLAMQSRVRQLEDELTESVEM-------REEVETKRKELE 1368

Query: 600  KQIA-------QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             QI        +   K +      +  +  +    +   +   A  E
Sbjct: 1369 AQIESMRATLIETRKKADEGALQQMEELKKKAQRDLETAQKAIAEAE 1415


>gi|301615159|ref|XP_002937052.1| PREDICTED: myosin-4-like [Xenopus (Silurana) tropicalis]
          Length = 2323

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/272 (10%), Positives = 86/272 (31%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       + +  LE         I+ +       + +  
Sbjct: 1951 IQLELNQVKGEIDRKIAEKDEEIEQIKRNSQRALESMQSTLDAEIRSRNDALRLKKKMEG 2010

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++  +    +       K+    +     +Q  +  +L      K+        L  
Sbjct: 2011 DLNEMEIQLSHANRQAAESQKQLRNVQSLYKDTQLHLDDALRGNDDLKEQ-------LAI 2063

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERG 545
            +     ++  + +E+          +K+      D  E+   L  +    +      E  
Sbjct: 2064 VERRNNLMTAEIEEMRSALEQTERGRKVAEQELIDVTERVQLLHSQNTSLINTKKKLEAD 2123

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
              +L  +++  V++A       +  I D     ++          L R K+ +E+ +  +
Sbjct: 2124 VSQLQSEVEEAVQEARNADEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 2183

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   +      L ++  ++ ++E++
Sbjct: 2184 QHRLDEAEQLAMKGGKKQLQKLEARVRELENE 2215


>gi|291225217|ref|XP_002732597.1| PREDICTED: dynactin 1-like [Saccoglossus kowalevskii]
          Length = 676

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 44/411 (10%), Positives = 121/411 (29%), Gaps = 61/411 (14%)

Query: 283 VLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342
           V  L         +SL + + + ++  L   + ++    D     +   Y+ ++ +    
Sbjct: 139 VEKLEPGPPPQAAASLDSGVGQNKVLELQLENVKLQQELDSSKADVTDLYEKLETLKIKR 198

Query: 343 IPGN---------RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR 393
                        R+    +   +   +  +       ++    +   ++   + E ++ 
Sbjct: 199 NEDKVKLKEYEKVRIQLQQMQEHKSKMAEAQSDLMRQLQEAKRTAKEALEERDRMEEQSS 258

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                 E A L+  +         QK    Y   + + + +L +   +E    G     N
Sbjct: 259 EVLETIEMATLDKEMAE-EKTDTLQKELDEYKDRLEEAVTEL-EILKSEIEEGGADGVAN 316

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513
                Q     + ++ +LVK +       +E      +     +  +             
Sbjct: 317 TYQMKQMEQQNQRLKEALVKMRDLLANEKQEFQ--KMMKEKEKLSSDYRDLKNSKERITK 374

Query: 514 ELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGF---------GELLKQLDRQVRDAGLW 563
           + ++  + L     +       EE+ + L ++            E +  L++        
Sbjct: 375 DYKEAENQLIELQEQVDAALGAEEMVETLTDKNLALEDKVKEMEETINDLEQLADMNEEL 434

Query: 564 SATTEANIVDVRQGYQ---------------------QALALYKRFRLLSRQKEEIEKQI 602
             ++    +++R+                           A   +FR L+   +E  +++
Sbjct: 435 QESSRDTEMELREELDMTNNKVTEAYHKLEASQETIADLQATINKFRELTTSLQEKNREL 494

Query: 603 AQVTAKGEAE-----------------KTAILISILHEVHIQIHQIESQEA 636
                + E+E                 K A   +    V +++ ++E Q+A
Sbjct: 495 RSKQMESESESVPDLMSPEQPQFDFKVKFAEAQAHAKAVEMELRKLEVQQA 545


>gi|198277220|ref|ZP_03209751.1| hypothetical protein BACPLE_03432 [Bacteroides plebeius DSM 17135]
 gi|198269718|gb|EDY93988.1| hypothetical protein BACPLE_03432 [Bacteroides plebeius DSM 17135]
          Length = 1218

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 98/273 (35%), Gaps = 8/273 (2%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                E  +  S   +    K   +    N      E  +   N    I D+   +Y   
Sbjct: 524 RMDELETFLKNSKSTLQGWLKEHKKGWEENIGKLCDESILWQTNLSPKIVDEGTSFYGIS 583

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
                +++  +      + + +  K+ A  + +    Q+  ++   + K   +P ++E  
Sbjct: 584 ISLQDIERHIRSIDDYQAEHDKGIKRLAEIQAETLRLQQEKEALEEQLKAKYQPRIKEQK 643

Query: 487 LLLTLINHP--AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            ++ +  +    + Q+  +++ D+     + +   +       E+K  +  E+ +   + 
Sbjct: 644 DVIAVQEYELEKLEQQYQKDMLDLDDWKKKAEAERTAKLRKLEEEKQRIAAELKE--IDG 701

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL--LSRQKEEIEKQI 602
               L ++   ++          + +I   ++    ++ L  +     ++ +K E E+Q+
Sbjct: 702 KLNNLNREKSEKLNQLKQEWNRVQQDIAHEKETQAGSIRLEDKEEQQRIATEKAEYERQM 761

Query: 603 AQV--TAKGEAEKTAILISILHEVHIQIHQIES 633
            Q   +   + E+   + S L ++  ++  I+ 
Sbjct: 762 KQELHSQGADTERLQQISSQLRDIDRELQFIKE 794


>gi|225468985|ref|XP_002262746.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 676

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 55/144 (38%), Gaps = 6/144 (4%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK---Q 552
            + + Q Q        +  + +L   +     E    L E +  +     + EL      
Sbjct: 11  ELRKTQKQLYEAEEERDRAVDELRE-MKKVAQEANMRLSEALSSKRSGELYTELSAAKKS 69

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           L    R+  L     E+  +++ +     L L +R   + + K+E+   IA++T     +
Sbjct: 70  LSDATRELQLKEKGMESLRLELEKVQLVELKLAERDAAVDKLKKELN--IAKITESHTVD 127

Query: 613 KTAILISILHEVHIQIHQIESQEA 636
             +   + + E+  ++ + ++ EA
Sbjct: 128 SLSESKARIQELERELEKKKNSEA 151


>gi|146305138|ref|YP_001185603.1| ATPase [Pseudomonas mendocina ymp]
 gi|145573339|gb|ABP82871.1| ATPase AAA-2 domain protein [Pseudomonas mendocina ymp]
          Length = 866

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 2/107 (1%)

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
            +   E    L  EI +   ER    + + LD  +   G      E  +V  R   +Q  
Sbjct: 410 LAAAPEALERLRGEIAE--GERQGEAMRRDLDAGLSIDGEALDALETRLVAARAELEQVE 467

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
             +   R L+ +  E  KQ A     G+AE+T    + L E+  ++ 
Sbjct: 468 TRWAIQRDLAERLLEQRKQCAAARLAGDAEETDEPRASLEELEAELR 514


>gi|50419697|ref|XP_458376.1| DEHA2C15862p [Debaryomyces hansenii CBS767]
 gi|49654042|emb|CAG86458.1| DEHA2C15862p [Debaryomyces hansenii]
          Length = 404

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 49/131 (37%), Gaps = 4/131 (3%)

Query: 494 HPAILQEQYQELADIRYDNNELQKL-WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
           +P++    ++ L +  Y     ++L    L     ++  +L   + +   E    E + +
Sbjct: 194 NPSLAS--WKALINKEYTTENEKELKRQELLDH-QQRIKYLIANLDENEEESSGDEQIDE 250

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
           ++ +       S      +    +  +   A +K+   L ++ +E++ QI ++    E  
Sbjct: 251 VEEEGEQDFKLSINKPTQVKIKTKSKRNREAKHKQRTELEQKLKELKNQINELAKLDEYN 310

Query: 613 KTAILISILHE 623
           + A       E
Sbjct: 311 ELAAAKQEAKE 321


>gi|763066|emb|CAA60045.1| cytoplasmic intermediate filament protein [Ascaris lumbricoides]
 gi|324510334|gb|ADY44320.1| Intermediate filament protein A [Ascaris suum]
          Length = 610

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           E+   +LL +L    R         + +   + +   Q   L     LL R+   IE++I
Sbjct: 173 EKEIRKLLDELSEYRRKYEDALRGHQIDRDRIDELLNQLSGLEAEINLLRRRIANIEEEI 232

Query: 603 AQVTAKGEAEKTAILISILHEVHIQ-IHQIESQ 634
           A++  K   +    L     ++  + +++I+ Q
Sbjct: 233 ARI-KKENLQFANELTKARSDLDQETLNRIDFQ 264


>gi|118383734|ref|XP_001025021.1| hypothetical protein TTHERM_00467250 [Tetrahymena thermophila]
 gi|89306788|gb|EAS04776.1| hypothetical protein TTHERM_00467250 [Tetrahymena thermophila
           SB210]
          Length = 4004

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 56/133 (42%), Gaps = 7/133 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            +++E  + +    Y +  L  L   +     +   +    +  +L +  F +    L +
Sbjct: 843 DVIEEIKKPIEPSNYQH--LINLEKKIHEI--KIFEYNEIVLQYQLSQNEFNKFY-HLTK 897

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
            +    + +   E  + + R   ++   L K  R+L  Q  +I +Q++++  KG+  ++ 
Sbjct: 898 LIFSIIIIAEKEEVRVKNERILVEKE--LQKEVRMLEGQTAKIRQQLSELILKGDNSQSM 955

Query: 616 ILISILHEVHIQI 628
            +I  + EV  QI
Sbjct: 956 QVIQEITEVKKQI 968


>gi|74006902|ref|XP_863532.1| PREDICTED: similar to GRIP1 associated protein 1 isoform 1 isoform
           2 [Canis familiaris]
          Length = 810

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 99/317 (31%), Gaps = 16/317 (5%)

Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
                  ++L         R+ +  L   E          +    KL  +     +  + 
Sbjct: 185 APMPLAEVELKWEMEKEEKRLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQES-FC 243

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R    +     D R ++E   +     +K Q  R    Q   +   Q   +   +  G  
Sbjct: 244 RLQTEKETLFNDSRNKIEELQQKKEADLKAQLARTQKLQQELEAANQSLAELRDQWQGER 303

Query: 448 ---RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                  +  + + Q   +Q L         L+     R+      +     +  +  + 
Sbjct: 304 LEHAAALRALQDQIQTAKTQELNTLRDENAGLAADLQQRQTEYEELMGQKDDLNSQLQES 363

Query: 505 LADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
           L        +LQ++         E Q+     E  + + +    E L++  +   + G  
Sbjct: 364 LRANSRLLEQLQEIGQEKEQLTQELQEARKSAEKRKAMLDELAMETLQEKSQHKEELGAV 423

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
               E  ++ VR  Y++ L      +   RQ+EE+  QI +  A+            L  
Sbjct: 424 RLRHEKEVLGVRARYERELRELHEDK--KRQEEELRGQIREEKART---------RELEN 472

Query: 624 VHIQIHQIESQEAMIEG 640
           +   + ++++Q   ++G
Sbjct: 473 LQQTVEELQAQVHSMDG 489


>gi|20807551|ref|NP_622722.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516086|gb|AAM24326.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 793

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 68/203 (33%), Gaps = 27/203 (13%)

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
           +K PS+R  +S + + K S     ++   L  +  +  +L   +     + + N   Q +
Sbjct: 3   EKMPSERKNKSFIEESKKSIAYLQKKEEFLSRIFENEQMLIVVWALDGRVVWFNRYTQAV 62

Query: 519 WSFLFSDFVEQKYFL-------PEEIHQRLCERGFGELLKQLDRQVR------------- 558
                 +  E+              I + L +     +  + +  +              
Sbjct: 63  IGIAVEEQTERIDISSIIPRDMISRIKENLDDTEDRGIHYKCENPMVLKDGRQIYIMWHN 122

Query: 559 ------DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
                 +   +  +T  +I D++   ++          L+ +    +++++ +  K  A 
Sbjct: 123 SIICDDEGNRYIVSTGIDITDLKNAERRLEEANSNLFALNEELMAQQEELSAMNEKLMA- 181

Query: 613 KTAILISILHEVHIQIHQIESQE 635
           +   L   L E+  Q  +++  E
Sbjct: 182 REEELRQNLIEIKRQQDELKRSE 204


>gi|58698160|ref|ZP_00373082.1| ankyrin repeat domain protein [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535310|gb|EAL59387.1| ankyrin repeat domain protein [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 517

 Score = 38.7 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 50/136 (36%), Gaps = 8/136 (5%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-------RGFGELLKQLDRQVRDAGLWSAT 566
           + ++L   L     ++     E++  RL                        +    +  
Sbjct: 262 DNKELAKLLIKYGADRSLIKDEDLIDRLNSMCDQPSEVVSSTSSHSKTHNAMETPEEAEK 321

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            + + V +++   Q     K+  LL +Q +++E + A +  K +  ++    + +  +  
Sbjct: 322 VKKSKVKLKELRTQLKDKQKKNELLKQQIQDLESEKATLKDKLDKTESQHSKTEVL-LEK 380

Query: 627 QIHQIESQEAMIEGFG 642
              ++E  ++ I G+G
Sbjct: 381 AQKELEESKSCIAGYG 396


>gi|300812997|ref|ZP_07093383.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496031|gb|EFK31167.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 944

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 65/208 (31%), Gaps = 12/208 (5%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              ++ RL  L  K  +    + +         ++   +Q    ++L +    K+   +E
Sbjct: 353 INQVKQRLADLADKLASYQELFKQADPATFPKSNKVTEAQIAYNNALAEQD--KRLKKQE 410

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              +       A    Q ++       +   +          +    +  +++ + + E 
Sbjct: 411 KLQVQL-----ADFHRQKEQFTSELCPDLPAES--KEFADYRLAWDKYQDKQVQRIMQEN 463

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              +   +L           A        V+    +   +  +   L +Q EEI      
Sbjct: 464 DLLKQKDRLASAESRIKQAHAELSEKTKQVQDKQDRLTEIKAQIATLEKQLEEIR---ND 520

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIE 632
              K +  +   L  +L E+  Q+++IE
Sbjct: 521 PETKKQLARKEELDQLLKELEKQLNEIE 548


>gi|299469941|emb|CBN76795.1| expressed unknown protein [Ectocarpus siliculosus]
          Length = 831

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 13/142 (9%)

Query: 498 LQEQYQELADIRYDNNELQKLWS---FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
            Q++ +EL  +  +N  L+ L      L +   E      EE+   + ERG  EL++ L 
Sbjct: 338 AQQRLEELEGVTRENRRLEALLQEEAALQAALREDVNAAKEELRVAVAERG--ELMRGLR 395

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +        +   E      R    Q +   +    L R    + +Q++   A+      
Sbjct: 396 QAKVFNDELAKGKEKAEERERAACAQCIDTKEGKLALQR---ALLEQLSASRAE-----L 447

Query: 615 AILISILHEVHIQIHQIESQEA 636
                   +    + ++    A
Sbjct: 448 REEQKRCQKAEATLGRLADSAA 469


>gi|296202137|ref|XP_002748270.1| PREDICTED: serine/threonine-protein kinase TAO1 [Callithrix
           jacchus]
          Length = 1001

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 53/158 (33%), Gaps = 25/158 (15%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              + + L + L            + + +RL E    +L    ++         +T    
Sbjct: 733 QTRQYKALRNHLLE---TTPKSEHKAVLKRLKEEQTRKLAILAEQYDHSINEMLSTQALR 789

Query: 571 IVDVRQGYQQALALYKRFRLL-----------------SRQKEEIEKQI---AQVTAKGE 610
           + + ++   Q L +  +  L                   R+  E+E+++     +  +  
Sbjct: 790 LDEAQEAECQVLKMQLQQELELLNAYQSKIKMQAEAQHDRELRELEQRVSLRRALLEQKI 849

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            E+   L +   E    + + +++E  IE F   S RL
Sbjct: 850 EEEMLALQNERTERIRSLLERQARE--IEAFDSESMRL 885


>gi|300068967|ref|NP_001177769.1| Bm8 interacting protein [Bombyx mori]
 gi|296040402|dbj|BAJ07613.1| Bm8 interacting protein 2-11 [Bombyx mori]
          Length = 1410

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 49/144 (34%), Gaps = 8/144 (5%)

Query: 496  AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG--FGELLKQL 553
             ++Q   +E+ +++  N+ L+          +       EE+   L E      ELL + 
Sbjct: 919  DMVQSLKEEINEMKAQNDRLRHSLDD-NEKLLRVSENTAEELQNTLSEVENTLSELLAER 977

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA-- 611
                      +   +A   ++    +       ++       +E EKQ+ ++    +   
Sbjct: 978  ANLEEQIAEINGKAQAFEEELITVSRDRDNFQLKYVSAETTLKESEKQVKEIEQLNKQLS 1037

Query: 612  ---EKTAILISILHEVHIQIHQIE 632
                K  +L   +  +   + Q++
Sbjct: 1038 ETKNKNELLQHEIDALKDALRQMK 1061


>gi|198455094|ref|XP_001359853.2| GA11274 [Drosophila pseudoobscura pseudoobscura]
 gi|198133091|gb|EAL29005.2| GA11274 [Drosophila pseudoobscura pseudoobscura]
          Length = 1266

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 62/200 (31%), Gaps = 13/200 (6%)

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            +             KK    +  K    +         K S K  LRE + L      P 
Sbjct: 955  EPSEQREVQVQDKPKKKVVKKRSKPVINQKSDDLSAAEKTSSKKCLREDSTLKL----PE 1010

Query: 497  ILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
                    + L+   +   +L+         F E+     ++    L +  + EL     
Sbjct: 1011 RTSYMSAVECLSPKDFG-EKLKSWRQHQIKLFEEELAGKEQQYKNELEKMEYQEL----- 1064

Query: 555  RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
             +        A+ +A+   +     +   L +    L R  EE + Q+    ++   ++ 
Sbjct: 1065 SRNTTLDETLASNQASKDTIIDYEAKLNELEQHICTLKRDIEE-QVQLFDKRSQEMQQEN 1123

Query: 615  AILISILHEVHIQIHQIESQ 634
              L     ++  +I Q+E Q
Sbjct: 1124 KQLAIEKTKLKERIFQMEMQ 1143


>gi|195385402|ref|XP_002051395.1| GJ12463 [Drosophila virilis]
 gi|194147852|gb|EDW63550.1| GJ12463 [Drosophila virilis]
          Length = 1194

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/261 (10%), Positives = 77/261 (29%), Gaps = 20/261 (7%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            S            +       D+ ++L+  L+  +   +DQ+ R    +          
Sbjct: 277 NSKINELEENMSRVQKEHCKAQDQCSKLQRDLRENVAQKEDQEERITTLEK--------- 327

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           +    +      +       ++ +    +L         + +K  L E  L       P 
Sbjct: 328 RYLNAQRESTSLHDLNEKLEQELRHKEAQLKLHEEKISAIEEKLELSEQKLAQHAKLQPD 387

Query: 497 ILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
           + ++    +  +             +      +++K      ++QRL            +
Sbjct: 388 MEEQLKARMEALTKAQERHGSAEDRIRALETNLDEKSAEVVRLNQRLKMNE--------E 439

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
             +R +         +   +    ++ +        L+++ E+  +++A+     ++E  
Sbjct: 440 HNLRLSSTVDKLLSESNERLEVHLKERMRALDEKNALTQELEKA-RKVAEELHHEKSEIM 498

Query: 615 AILISILHEVHIQIHQIESQE 635
             L     E+     Q+  QE
Sbjct: 499 KELSKTRLEIENFKRQLLQQE 519


>gi|168701615|ref|ZP_02733892.1| ATPase AAA-2 domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 871

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/200 (11%), Positives = 70/200 (35%), Gaps = 7/200 (3%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
           +++++ + +   R ++           +  +++    + ++     +++ AL+   +   
Sbjct: 319 YRQHVEKDAALERRFQPVQVGEPSVEDTISILRGLKERYEVHHGVRIKDGALVSAAVLSS 378

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
             + +++     I   +    KL + + S   E        +   +      +   +  +
Sbjct: 379 RYIADRFLPDKAIDLVDEAAAKLRTEIDSMPTELDEISRRVMQLEIEREALKKESDRASK 438

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
              +             D  +   QA       +   +Q + + +QI QV A+ E  + A
Sbjct: 439 DRLEKLEHELGNLKADADALKARWQA------EKQAVQQVQAVREQIEQVKAEIEKAERA 492

Query: 616 ILISILHEVH-IQIHQIESQ 634
             ++   E+   ++  +E Q
Sbjct: 493 YDLNKAAELKYGKLPALEKQ 512


>gi|126327972|ref|XP_001369896.1| PREDICTED: similar to NUMA1 variant protein [Monodelphis domestica]
          Length = 2342

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 33/329 (10%), Positives = 94/329 (28%), Gaps = 22/329 (6%)

Query: 327 GLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLW 386
           G   + +  +++   L        V     +D +                  +      +
Sbjct: 519 GKNPSQEKGEVLGDILQLEALKQEVANFAAKDAELQATIKQLEDERNQWKLEMQAEQDRF 578

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIK--DQKLRYYYSQAIRDRLQQLFQKYITEHS 444
           K E +        + A+L   +      ++  D  L     Q       QL +    +  
Sbjct: 579 KEEKQQLEQKAQTQEAQLTAQVATLHATLQQQDHDLADL-KQQTEKEQAQLTETLQQQEL 637

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
                 ++  +  ++    +  ++  +   K++     ++  L   +  +    QE+   
Sbjct: 638 ASQGLQRQVEQLSNKLKQEEGRLEGLVQDWKVTS--QTKDQQLAAAMEKYQEAQQERDAA 695

Query: 505 LADIRYDNN----ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
           L  ++        EL  L   L +                  +    + +++L   V + 
Sbjct: 696 LKQLKELEKTKAVELGALQQQLQATKDACNSAQSCAAKAEQEKTILSQKVEELSTCVVEL 755

Query: 561 GLWSATTEAN----------IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
             W    +A           + ++    +           L+R+  ++++++  +    +
Sbjct: 756 RTWQEEHKAEAKLAESLQTRVEELENQLKAEQQKLAEREELARENAQLQERLLSLEDSLQ 815

Query: 611 AEK---TAILISILHEVHIQIHQIESQEA 636
             K          +  +  Q+ +I   EA
Sbjct: 816 NTKGILEDEKRQAVEALEGQLRRISELEA 844


>gi|145491917|ref|XP_001431957.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399064|emb|CAK64559.1| unnamed protein product [Paramecium tetraurelia]
          Length = 754

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 95/277 (34%), Gaps = 12/277 (4%)

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
            + L  ++            E +            +  K  I+ ++  K +    + I +
Sbjct: 227 IQNLDQKASLDQIDKIASILEVKVDRQDFSILINSLQNKAEIHQLEVIKEQQQELKNIVE 286

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
              Q     +TE         K    +       + + S           S R       
Sbjct: 287 SRLQDNNSLMTEMKQQVDGVTKQLNKKADNKELDKHVHSINSLQGELDGYSQRFNKFSQE 346

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLW---SFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           +I+    L+   + L   ++ + ++Q      + L     E+ Y L E I Q   +    
Sbjct: 347 IISDLDRLRN--EILESKQFTSEQMQTTIMKSTHLSEKLTEELYNLSENIKQ--MDDDKR 402

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           E L  L + V    +     +  +  +++         + F+ L RQ +++ K+I++V A
Sbjct: 403 EELDDLKKMVNTMRIQKKDIQQKVDQMQEHL-DEFKSDQVFKQLQRQVQQMNKEISEVKA 461

Query: 608 KG---EAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           K    E E+   +     ++  ++++I+   +  +GF
Sbjct: 462 KQLSYEDEQHIQVQIE-QQLQRRVNEIKKTGSSQDGF 497


>gi|119586559|gb|EAW66155.1| myosin, heavy polypeptide 6, cardiac muscle, alpha (cardiomyopathy,
            hypertrophic 1), isoform CRA_b [Homo sapiens]
          Length = 1940

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 55/155 (35%), Gaps = 8/155 (5%)

Query: 488  LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC----- 542
            +  +     +LQ + +EL  +       +KL      +  E+   L  +    +      
Sbjct: 1674 IAIVERRNNLLQAELEELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKM 1733

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            E    +L  +++  V++        +  I D     ++          L R K+ +E+ I
Sbjct: 1734 ESDLTQLQSEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTI 1793

Query: 603  AQVTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              +  + +  +   L      L ++  ++ ++E +
Sbjct: 1794 KDLQHRLDEAEQIALKGGKKQLQKLEARVRELEGE 1828


>gi|21687020|ref|NP_660288.1| EVI5-like protein isoform 2 [Homo sapiens]
 gi|332852430|ref|XP_003316104.1| PREDICTED: ecotropic viral integration site 5-like isoform 1 [Pan
           troglodytes]
 gi|74731362|sp|Q96CN4|EVI5L_HUMAN RecName: Full=EVI5-like protein; AltName: Full=Ecotropic viral
           integration site 5-like protein
 gi|15559491|gb|AAH14111.1| Ecotropic viral integration site 5-like [Homo sapiens]
 gi|119589379|gb|EAW68973.1| ecotropic viral integration site 5-like, isoform CRA_a [Homo
           sapiens]
          Length = 794

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 91/277 (32%), Gaps = 18/277 (6%)

Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
           +    +  P +   +    E     +     E    L+   + + D + R        + 
Sbjct: 442 QLQEQQENPRLTEDFVSHLETELEQSRLRETETLGALREMQDKVLDMEKRNSSLPD-ENN 500

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR------EA 485
           + QL ++        G+        + Q        Q+ L +G   K+   +      + 
Sbjct: 501 VAQLQEELKALKVREGQAVASTRELKLQLQELSDTWQAHLARGGRWKESPRKLVVGELQD 560

Query: 486 ALLLTLINHPAILQEQYQELADI-RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-RLCE 543
            L+   +     L E  +    +   +  +   +   L +    ++  L E++       
Sbjct: 561 ELMSVRLREAQALAEGRELRQRVVELETQDH--IHRNLLNRVEAERAALQEKLQYLAAQN 618

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +G    L +  R+  +A   S      +  +R+    A     R R+   + +  E +I 
Sbjct: 619 KGLQTQLSESRRKQAEAECKSKEEVMAV-RLREADSMAAVAEMRQRIAELEIQREEGRIQ 677

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
                 ++ +       + E+  QI +++++  +++G
Sbjct: 678 GQLNHSDSSQY------IRELKDQIEELKAEVRLLKG 708


>gi|24647351|ref|NP_732111.1| myosin heavy chain-like, isoform D [Drosophila melanogaster]
 gi|23171440|gb|AAN13697.1| myosin heavy chain-like, isoform D [Drosophila melanogaster]
          Length = 1134

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 35/226 (15%)

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           L+ L ++    ++   +  +K          + R  + +  +    K     E   L   
Sbjct: 563 LRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQT 622

Query: 492 INHPAILQEQYQE--------LADIRY---DNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
           +    +  E  +E        L ++ +      E  +L           +     E   +
Sbjct: 623 LADTRLDLEFKEEKLASLQRELEEMTFGGGTEEEFAQLR----------RSKNETERRAK 672

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LLSRQKEEIE 599
             E    E+  Q+    +       T E    + R+  QQ     +  R    ++ + +E
Sbjct: 673 EQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALE 732

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE--------SQEAM 637
            Q+     + E E+  +L+   HE+  ++  +E        ++EA+
Sbjct: 733 CQL-----ETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEAL 773



 Score = 37.2 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 23/284 (8%), Positives = 76/284 (26%), Gaps = 21/284 (7%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE--IHLKNCINHIKDQ 418
             +R   +   ++   E   +    +K+          +                 +   
Sbjct: 700 ETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSM 759

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
           + R    +   + L Q  ++ + ++    +  +          P + L++   ++ +L  
Sbjct: 760 EDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIR--QLRNQLED 817

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             S R        +      +   +        +   +        +     +    E+ 
Sbjct: 818 AESAR-----SLAMKARQTAE--AELTEVQAMFDESHRARNDA--EERANAAHRDRAELQ 868

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            ++ E             ++             ++V +   +   +      L  Q  E+
Sbjct: 869 AQIEENEEEL-----GELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAEL 923

Query: 599 EKQIAQVTAKGEAEKTA---ILISILHEVHIQIHQIESQEAMIE 639
           + ++  V   G+         L     E+  ++   ++  A +E
Sbjct: 924 QHRLDNVENLGDPSMAMMSKRLELRTKELESRLELEQATRARLE 967


>gi|322823678|gb|EFZ29380.1| hypothetical protein TCSYLVIO_4359 [Trypanosoma cruzi]
          Length = 766

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 68/200 (34%), Gaps = 4/200 (2%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           + ++L           G            + P    +  +         P + E A +  
Sbjct: 510 KFEELLNPKRGFWQEEGDSVTIEVGIVLVETPKPLSLAKNTSNKDKQTGPKVDEKA-MRQ 568

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           LI    + Q + +   ++     + +K    +     +  + L E       +R   EL 
Sbjct: 569 LIEDEKMAQMKKRIKQEMAKLTRDGEKARKDIAQRAAKGFHDLMERFKTE-KQRIAKELA 627

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           ++  R+ ++                +  ++   L K    LSR+K+E+ +   ++   G 
Sbjct: 628 ERERREQQERQRELEIIRQAQEQNAEMRRRIEELKKESVNLSREKKELTQATKELKKAG- 686

Query: 611 AEKTAILISILHEVHIQIHQ 630
            EK A  ++ ++E+   + Q
Sbjct: 687 -EKYAQELNAINEMRALLQQ 705


>gi|322494904|emb|CBZ30207.1| conserved hypothetical protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 2005

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 62/218 (28%), Gaps = 26/218 (11%)

Query: 429  RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             + L    ++   E        ++ A   ++       +   L K +   +  L      
Sbjct: 820  AEALASDNERLAAELERAQEEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLA----- 874

Query: 489  LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK---------YFLPEEIHQ 539
                ++  +  +  +  A++     E ++L   L     E +             E +  
Sbjct: 875  ----DNRKLASDNERLAAELERAQEEAERLAGDLEKAQEEGERQLADNRKLASDNERLAA 930

Query: 540  RLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL----YKRFRLLSR 593
             L   +     L   L++   +A   +   +    +  +       L     +    L R
Sbjct: 931  ELERAQEEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLADNRKLASDNERLAAELER 990

Query: 594  QKEEIEKQIAQVTAKGEAEKTA--ILISILHEVHIQIH 629
             +EE E+    +    E  +T    L     E   Q+ 
Sbjct: 991  AQEEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLA 1028



 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 41/396 (10%), Positives = 101/396 (25%), Gaps = 35/396 (8%)

Query: 255  LNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLS 314
                            ++ +   +   + L+      +    +L   L + Q     +L+
Sbjct: 1347 RQLADNRKLASDNERLAAELERAQEEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLA 1406

Query: 315  PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
                L  D +           +                   GE     ++   +    +L
Sbjct: 1407 DNRKLASDNERLAAELERAQEEAERLAGDLEKAEEEAETLAGE-----LQKAQEEGERQL 1461

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR--YYYSQAIRD-- 430
                    D         R+    +  A      +     +  +  +      + + D  
Sbjct: 1462 ADNRKLASDNERLAAELERAQEEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLADNR 1521

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            +L    ++   E        ++ A   ++       +   L K +   +  L        
Sbjct: 1522 KLASDNERLAAELERAQEEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLA------- 1574

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK---------YFLPEEIHQRL 541
              ++  +  +  +  A++     E ++L   L     E +             E +   L
Sbjct: 1575 --DNRKLASDNERLAAELERAQEEAERLAGDLEKAQEEGERQLADNRKLASDNERLAAEL 1632

Query: 542  C--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL----YKRFRLLSRQK 595
               +     L   L++   +A   +   +    +  +       L     +    L R +
Sbjct: 1633 ERAQEEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLADNRKLASDNERLAAELERAQ 1692

Query: 596  EEIEKQIAQVTAKGEAEKTA--ILISILHEVHIQIH 629
            EE E+    +    E  +T    L     E   Q+ 
Sbjct: 1693 EEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLA 1728



 Score = 37.6 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 41/396 (10%), Positives = 101/396 (25%), Gaps = 35/396 (8%)

Query: 255  LNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLS 314
                            ++ +   +   + L+      +    +L   L + Q     +L+
Sbjct: 1081 RQLADNRKLASDNERLAAELERAQEEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLA 1140

Query: 315  PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
                L  D +           +                   GE     ++   +    +L
Sbjct: 1141 DNRKLASDNERLAAELERAQEEAERLAGDLEKAEEEAETLAGE-----LQKAQEEGERQL 1195

Query: 375  IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR--YYYSQAIRD-- 430
                    D         R+    +  A      +     +  +  +      + + D  
Sbjct: 1196 ADNRKLASDNERLAAELERAQEEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLADNR 1255

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
            +L    ++   E        ++ A   ++       +   L K +   +  L        
Sbjct: 1256 KLASDNERLAAELERAQEEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLA------- 1308

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK---------YFLPEEIHQRL 541
              ++  +  +  +  A++     E ++L   L     E +             E +   L
Sbjct: 1309 --DNRKLASDNERLAAELERAQEETERLAGDLEKAQEEGERQLADNRKLASDNERLAAEL 1366

Query: 542  C--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL----YKRFRLLSRQK 595
               +     L   L++   +A   +   +    +  +       L     +    L R +
Sbjct: 1367 ERAQEEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLADNRKLASDNERLAAELERAQ 1426

Query: 596  EEIEKQIAQVTAKGEAEKTA--ILISILHEVHIQIH 629
            EE E+    +    E  +T    L     E   Q+ 
Sbjct: 1427 EEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLA 1462


>gi|310798492|gb|EFQ33385.1| CAP-Gly domain-containing protein [Glomerella graminicola M1.001]
          Length = 1306

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 79/219 (36%), Gaps = 26/219 (11%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS-LRE 484
           + +RD+++ L +      +   ++     +    +   + L Q              L E
Sbjct: 453 EELRDQIKTLEEDLKEFGTVKEQFATAKDKLAQSEAAVEDLRQQLDNALGAEDMIEELTE 512

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-EIHQRL-- 541
             +  ++      L+   ++L +++  N+EL+       +    +K    E +    +  
Sbjct: 513 RNM--SMSEQIEELKAVIEDLENLKEINDELE------INHVQNEKEMQEELDFKDSVIT 564

Query: 542 ----CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                     E L+ ++  +        + ++++ D+R  +       ++    SR   +
Sbjct: 565 EQARRAAEQEEALEDMEYTLSRFRGLVTSLQSDLEDMRASHAVTETESEQLNSKSRAMMD 624

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           +  ++    +K          + +  + +++ ++E+QEA
Sbjct: 625 LNMKLQISASK----------AQVKTIDLELRRLEAQEA 653


>gi|300796368|ref|NP_957206.2| mitotic spindle assembly checkpoint protein MAD1 [Danio rerio]
 gi|300431449|gb|ADK12653.1| mitotic arrest deficient-like protein 1 [Danio rerio]
          Length = 717

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 93/281 (33%), Gaps = 5/281 (1%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++       E          +  + RET+  +    +E   L   L+     ++++    
Sbjct: 244 MKSEVARLPEMEREIKRLREENSFLRETKENNSLLKEETEGLRRKLERLEKVMEEKIKVE 303

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              + +   LQ              +    +      +       Q +       +    
Sbjct: 304 LEKEKMERELQAWENIGQATGLNIRKPEDLSREVIQIQQRELNFKQQNYSLNSSVRSVEK 363

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
             + LL  +    A  QE+ ++  +       LQK    L +   +    + E     L 
Sbjct: 364 ARSELLTEIAQLRAKAQEEQKKRENQDSLVRRLQK-RVLLLTKERDGMRAILESYDSELA 422

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
              +   L    ++  D         A +   + +  ++A +   + ++++ + E +++Q
Sbjct: 423 TSEYSPQLTLRVKEAEDMLQKVQAHNAEMETQLSKAQEEAGSFKLQAQMVAAELEALKEQ 482

Query: 602 I---AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
               A+ ++   AE+ + L   + E+  +  ++E Q  ++E
Sbjct: 483 QVSNAERSSSVTAEEISSLRQKIEELEAERQRLEEQNNILE 523


>gi|297678520|ref|XP_002817118.1| PREDICTED: filamin-A-interacting protein 1-like [Pongo abelii]
          Length = 1177

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 102/365 (27%), Gaps = 24/365 (6%)

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           +   DV+ + +              +    ++L  L    +L  +             +L
Sbjct: 92  QAREDVIHMLKTEKTKPEVLEAHYGSAEPEKVLRVLHRDAILAQEESIGEDVYEKPISEL 151

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRETENR 393
                        +L                   E    +    +    D     E E  
Sbjct: 152 DRLEEKQKETYRRMLEQLLL--AEKCHRRTVYELENEKHKHTDYMNKSDDFTNLLEQERE 209

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                 E+ +     K   N  +  KLR    +     L  + ++ +       +  K  
Sbjct: 210 RLKKLLEQEKAYQARKEKENAKRLNKLRDELVKLKSFALMLVDERQMHIEQLGLQSQKVQ 269

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQELADIRYD 511
              +  +   ++L   +    +  +K    E         H A    QE  +  A +   
Sbjct: 270 DLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDF-----EHKASRFSQEHEEMNAKLANQ 324

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR-QVRDAGLWSATTEAN 570
            +  ++L   L       +       + +  E    EL  ++ + +  ++ L      A 
Sbjct: 325 ESHNRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLM-----AE 379

Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           + ++R+   +     +       Q  E+ K++ +         +  L   + ++  ++ +
Sbjct: 380 VENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHH-----SKELKLEVEKLQKRMSE 434

Query: 631 IESQE 635
           +E  E
Sbjct: 435 LEKLE 439


>gi|270014997|gb|EFA11445.1| hypothetical protein TcasGA2_TC013627 [Tribolium castaneum]
          Length = 1995

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 35/314 (11%), Positives = 82/314 (26%), Gaps = 16/314 (5%)

Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351
           Q   +     + +     L           D ++   +      + +            V
Sbjct: 328 QRPTAQAAQKIADELRSKLLAAETLCEELMDENEDIKKELRDMEEQMDEMQDNFREDQAV 387

Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
             +  +          +    KL         +  ++    R             +L+  
Sbjct: 388 EYTSLKKELDQTTKNCRILSFKLRKAERKTEQLEQEKNEAERKLKEISGGQSTLANLEKM 447

Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
               +D KL    S  ++  L +  QK   E     +   K            ++ + SL
Sbjct: 448 KQLEQDLKLANEVSIRLQKELDETNQKLQEESKTSKKKAPKLGSIGKFPSADGKVSRESL 507

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
            +G     P+     L          ++ +      +++   E Q L   +         
Sbjct: 508 TRGGSQDDPAQLLRDL-------QDSMEREADLREQLKFAEEEAQNLRKKVSRI-----E 555

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA----NIVDVRQGYQQALALYKR 587
              E +  +L +       ++L             +E     +  D  +   Q     + 
Sbjct: 556 DDNESLVLQLKKMATRARSRKLSPTNNSRLTPEPPSEKGDVSDDEDPAEIKLQLELSEQE 615

Query: 588 FRLLSRQKEEIEKQ 601
             +L R+ E++E +
Sbjct: 616 ASVLRRKVEDLEAE 629


>gi|221640905|ref|YP_002527167.1| ATPase AAA-2 domain-containing protein [Rhodobacter sphaeroides
           KD131]
 gi|221161686|gb|ACM02666.1| ATPase AAA-2 domain protein [Rhodobacter sphaeroides KD131]
          Length = 870

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 17/153 (11%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG---- 547
           ++H  I      +   I   +    +L   + S   E      + +  ++          
Sbjct: 375 LSHRYITDRFLPD-KAIDLVDEAASRLRMEVDSKPEELDALDRQILQAQIEAEALKKEDD 433

Query: 548 ----ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
               + L +L++++      +A   A     R   + A  L ++   L R + E+E    
Sbjct: 434 AASKDRLAKLEKELSGMTERAAEMTAQWQAERDKLEAARDLKEQ---LDRARAELE---- 486

Query: 604 QVTAKGEAEKTAIL-ISILHEVHIQIHQIESQE 635
           QV  +G   +   L   ++ ++  ++ + E++E
Sbjct: 487 QVKREGNLARAGELSYGVIPQIEKKLEEAEARE 519


>gi|194216426|ref|XP_001916828.1| PREDICTED: similar to Temporarily Assigned Gene name family member
           (tag-241) [Equus caballus]
          Length = 946

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 22/197 (11%)

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPA 496
             + +   +   +      +       + S L KG+    PS REA L   L  +     
Sbjct: 539 RKKMAKIDKEKDRFEHELQKYRSFYGDLDSPLPKGEAGGPPSTREAELKLRLRLVEEEAN 598

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           IL  +  EL        E + L + L     +        +      R   E L +L + 
Sbjct: 599 ILGRKIVELEV------ENRGLKAELDDLRGDDFNGSANPLM-----REQSESLSELRQH 647

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           ++     +     N+ D+ +  ++  A   +++         +    +     ++ KT  
Sbjct: 648 LQLVEDETELLRRNVADLEEQNKRITAELNKYKY--------KSGGHESARHHDSAKTEA 699

Query: 617 LISILHEVHIQIHQIES 633
           L   L    +QI+++  
Sbjct: 700 LQEELKAARLQINELSG 716


>gi|194901876|ref|XP_001980477.1| GG18576 [Drosophila erecta]
 gi|190652180|gb|EDV49435.1| GG18576 [Drosophila erecta]
          Length = 1128

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 72/228 (31%), Gaps = 20/228 (8%)

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           +RL  + +K            ++       +  +   +Q++L +         +E     
Sbjct: 322 ERLAAIVKKEQRIDKEKIMAIEQEKTENQSRNINISFIQTNLDRMDNLVNIIKKERVNQQ 381

Query: 490 TLINHP-----AILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLC 542
           T +         + Q     L        E  +L + +   ++ ++ +      + ++  
Sbjct: 382 TKLQDLDAICIELRQHNEDLLTRFHLKEQEHGELLTEMRELNEALKGRGDAISRLQEQHE 441

Query: 543 -----ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                +R     L    +  ++        ++ + ++ +    A +       +SR   E
Sbjct: 442 AEVKRQRDLEVQLSNSQQAAQEKLQKIKQLQSRVEELEKANADAQSDVLSTSTISR--AE 499

Query: 598 IEKQIAQVTAKGEA------EKTAILISILHEVHIQIHQIESQEAMIE 639
              ++ ++    E          A L   L E   Q++++E   A+ E
Sbjct: 500 ELSRLRELDEGYEEKYHKLRAIAAKLKKKLQEQTQQLNEMEQSGALKE 547


>gi|154275076|ref|XP_001538389.1| hypothetical protein HCAG_05994 [Ajellomyces capsulatus NAm1]
 gi|150414829|gb|EDN10191.1| hypothetical protein HCAG_05994 [Ajellomyces capsulatus NAm1]
          Length = 1217

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 78/256 (30%), Gaps = 35/256 (13%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +  L+    + ++ +L+ + +K + +           +     +   Q+L      + + 
Sbjct: 143 NPVLKE--VEDLKTKLRVMEKKRVEDREKLKSLEILRSERDKFEVIIQKLQTKYQPQQQE 200

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
             +   +    +  +     +  E    +     D    +++   + ++F   K    E 
Sbjct: 201 ITQLRKQLKDAMARVEEAERLQAEHESIVEMATLDREMAEEMCEAIKAEFEALKEKSEEL 260

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY--------QQALALYKRF 588
             +    R   + L Q+      +       E     +R+          QQ   L  + 
Sbjct: 261 ELEVEVLREENQELGQVMSPEEKSSQGWLQMERTNERLREALIRLRDMTQQQETDLRNQI 320

Query: 589 RLLSRQKEE------------------------IEKQIAQVTAKGEAEKTAILISILHEV 624
           + L  + E+                        +++Q+  + A+   E+ A       E 
Sbjct: 321 KELEGELEDFAAIKANYEIAKEQLLITEANMEDLKQQVEALGAEDMIEELAEKNMQYQEQ 380

Query: 625 HIQIHQ-IESQEAMIE 639
             ++   IE  E++ E
Sbjct: 381 VNELKAVIEDLESLKE 396


>gi|149038134|gb|EDL92494.1| polyamine modulated factor 1 binding protein 1, isoform CRA_a
           [Rattus norvegicus]
          Length = 715

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 52/154 (33%), Gaps = 14/154 (9%)

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLD 554
           +  E+  EL  ++    EL      L            E +   + +      E  +QL 
Sbjct: 437 LFLEKETELEKLQSTTKELDA---NLQEVRQSTSKIDNEGLRSEIQKLKESLEEAREQLR 493

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA---------QV 605
              ++          +  ++   +++      + +      ++++ Q+          + 
Sbjct: 494 VSDQNLSQCKDEAHLSANNLEDAHRKLENCLLQDKRKDDVIKDLQSQLQKLQKESSETEE 553

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             K   ++   L S L+E   ++   E ++++++
Sbjct: 554 ERKNNRQQLLELSSELNEGQRRLSSAEKEKSLLQ 587


>gi|150398909|ref|YP_001322676.1| hypothetical protein Mevan_0153 [Methanococcus vannielii SB]
 gi|150011612|gb|ABR54064.1| conserved hypothetical protein [Methanococcus vannielii SB]
          Length = 231

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 52/147 (35%), Gaps = 2/147 (1%)

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKL--WSFLFSDFVEQKYFLPEEIHQRLCE 543
            ++   I +P + Q  + +    +  +    K+     +   ++ ++ F  E  +     
Sbjct: 85  EIIDKFIPYPILFQIIHNDYKIYKIAHKTKNKIDSNKCIVDIYLTKENFDTENSNMLFNS 144

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                  ++L +   D      T E N     +   +     + ++    + +E+E    
Sbjct: 145 NNLDIFYERLLKLFLDDFKIPNTFEDNDDHPEERSFEIEKSIENYKKFRERYKELEILEK 204

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQ 630
           +V  + + +K   + + +  +  ++ +
Sbjct: 205 KVLKEKQPDKQFKIYNEIKRIKKELEK 231


>gi|308805360|ref|XP_003079992.1| Myosin class II heavy chain (ISS) [Ostreococcus tauri]
 gi|116058449|emb|CAL53638.1| Myosin class II heavy chain (ISS) [Ostreococcus tauri]
          Length = 761

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 72/232 (31%), Gaps = 21/232 (9%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGY--GRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            L+           + + +    E       R  ++      +   S R  QS L +   
Sbjct: 172 TLKERAVDEEARLTRAIERADAAESREADVARRIRELDGDEQRARVSIREAQSDLARCVD 231

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           +K  +LRE   L          +   + L   +       +L+  +     E      + 
Sbjct: 232 AKTHTLRETESLK---RDVDAARNAVETLEAEK------ARLFRIIADMRTELDDRERQT 282

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           +          E +     +V          E  I +     +  +  Y+R     R++E
Sbjct: 283 VDAAEFAANECESIAAAWDEVEITRQALERQEKMIEETAARLEHNVQAYERDSTAFRERE 342

Query: 597 EI----------EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           E+          ++   +  A+   +++  L +    +  ++ ++ES EA I
Sbjct: 343 ELYERKVRDLVEQEDFLRKIARENEDRSRDLAARDTALAERLRRLESGEAEI 394


>gi|148231953|ref|NP_001084885.1| leucine-rich repeat and coiled-coil domain-containing protein 1
           [Xenopus laevis]
 gi|82237108|sp|Q6NRC9|LRCC1_XENLA RecName: Full=Leucine-rich repeat and coiled-coil domain-containing
           protein 1
 gi|47123183|gb|AAH70827.1| Lrrcc1 protein [Xenopus laevis]
          Length = 1030

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/298 (10%), Positives = 84/298 (28%), Gaps = 20/298 (6%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH--LKNCINHIKD 417
            +                +   +  L     E       + +         +     ++D
Sbjct: 465 MAVYTTDRIKELLLKEKNAKSKLQELIHHLREENEKLMDELKKLKCKEEDYQKAYKSMED 524

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              +       +  L+    +         +      R   ++   +      ++  K  
Sbjct: 525 TLAKLETQNIQKQALEMKQVQETERKVSASQREIDLLRVALRQQKEKVNQLHEVLTSKEQ 584

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E+      +N P       QE+A   + +++    +    +   +Q   L +E 
Sbjct: 585 LHRKELES---RVALNGPEFQYALAQEMAKEEHHHSQQIHSFQEKINLLTQQYADLEDEF 641

Query: 538 HQRLC---------ERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALY 585
              L          + GF  +  +L              + +   + ++    ++  A  
Sbjct: 642 RAALIIEAERFKEVKDGFDNVASELAEHKETVHRCRQKEKQSATLMQELTTMVKEQKARI 701

Query: 586 KRFRLLSRQK-EEIEKQIAQVTAKGEAEKTAILISIL--HEVHIQIHQIESQEAMIEG 640
                  ++   +++ +I  +    E  +   + + L   E    I Q+ +QE++I+G
Sbjct: 702 AEITKAKQEIISDLKSKIHSLEKVAEEGRQKTVQTELLKKEKSKLISQLTAQESLIDG 759


>gi|148236970|ref|NP_001084666.1| homer homolog 3 [Xenopus laevis]
 gi|46249572|gb|AAH68802.1| MGC81389 protein [Xenopus laevis]
          Length = 357

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/208 (10%), Positives = 65/208 (31%), Gaps = 16/208 (7%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
             RL +   +  TE +                  +       L + + ++     E   +
Sbjct: 114 AARLARERSQDKTELTNPALNITSQQVIPCPIISANGPGDDKLFRSQSAEMEFSTERERV 173

Query: 489 LTLINHPAILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
             +++  ++ + Q++      + +  +   KL + L       + +  +    +      
Sbjct: 174 KKMLSEGSVCEVQWES----EFFSLQDNNNKLVAALQEANANVEKWKKQLAAYQEEAAML 229

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            + + +L+ Q         T E    ++    +    L K         +E    + ++ 
Sbjct: 230 RQRVAELESQTLK-----ETNEEPGDELASRLKDLEVLLKAKEEEILLLKEQRPDLMELE 284

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634
           ++ +      L+  L E+  +   +E +
Sbjct: 285 SERDK-----LLQRLQELEERNQDMEKE 307


>gi|74002605|ref|XP_848707.1| PREDICTED: similar to myosin, heavy polypeptide 7, cardiac muscle,
            beta [Canis familiaris]
          Length = 2106

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/273 (10%), Positives = 91/273 (33%), Gaps = 22/273 (8%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
              +  +   L   +   +    N+       ++ L+   +   + I+  +L+      + 
Sbjct: 1609 EAKAELERKLSEKNEEIENLRRNKQCAIDSLQSSLDSETR---SRIEVTRLKKNVEGDLS 1665

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            +   QL               +   + +D +    +L  S+ +  +L ++ ++ E     
Sbjct: 1666 EMELQLSCANRQVSEATKSLGQLQTQVKDLQ---VQLDDSTHLNSELKEQVAMAER---- 1718

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSF-LFSDFVEQKYFLPEEIHQRLCERGFGE 548
                H ++LQ + +EL  +       ++L    L         F  +       ++    
Sbjct: 1719 ----HNSLLQSELEELRSLYKQTECGRRLAEEELLQATERINLFHTQNTSLLSQKKKLEV 1774

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQ 604
             + ++ ++  +A       E                 K+ +     L R ++ +E+ I  
Sbjct: 1775 DVARMQKEAEEAVQRCQNAEEKAKKAATEAANVAEELKKEQDTSAHLERMRKNMEQTIKD 1834

Query: 605  VTAKGEAEKTAILI---SILHEVHIQIHQIESQ 634
            +  + +  +   ++     + ++  ++ ++E +
Sbjct: 1835 LQKRLDEAEQTAVMGNRKQIQKLESRVRELEGE 1867


>gi|327490289|gb|EGF22077.1| cell division protein Smc [Streptococcus sanguinis SK1058]
          Length = 1178

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 44/373 (11%), Positives = 106/373 (28%), Gaps = 59/373 (15%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             I    D +        +  D+    +  G   +   +      +       +      
Sbjct: 102 RHIYRSGDSEYKIDGKKVRLRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIF 161

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK---------------DQK 419
              +  L     ++ETE++   T D    LE  +    + +K               D +
Sbjct: 162 EEAAGVLKYKTRRKETESKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQ 221

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y   +  +L    +K            ++ A +  ++   +   Q+   K     +
Sbjct: 222 RRELYLDVLVAQLTANKEKLTQSEEDLRNIQQELAAYYSKRDELEVENQTLKAKRHELNQ 281

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDN-----------NELQKLWSFL--FSDF 526
               +     +L+    ++ +  +++   + ++             L  L   L      
Sbjct: 282 TLSDDQ---ASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLAQIESN 338

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           +E K     +I  +L +       + +     +   +S   +  I  +R+   Q + L +
Sbjct: 339 IEDKQAELSQIAAKLSDNE-----QSIAALEAELADFSDDPDQLIEHLRE---QYVKLMQ 390

Query: 587 RFRLLSRQKEEIEKQIA--------------------QVTAKGEAEKTAILISILHEVHI 626
               LS     +E Q+A                    + +   E      L      +  
Sbjct: 391 EEANLSNDLTSLESQLASELKLAESKKADYAKLQADLEASQIQEQAGLEELEIARQALKG 450

Query: 627 QIHQIESQEAMIE 639
            +   +SQ  ++E
Sbjct: 451 LLADYQSQIQLVE 463



 Score = 37.9 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 94/282 (33%), Gaps = 12/282 (4%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             +  +  ++V  L        +  E+      +  A      +  + +   +  R+  +
Sbjct: 221 QRRELYLDVLVAQLTANKEKLTQSEEDLRNIQQELAAYYSKRDELEVENQTLKAKRHELN 280

Query: 426 QAIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           Q + D       L +L      +         + A  R +       +   L + + + +
Sbjct: 281 QTLSDDQASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLAQIESNIE 340

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE--QKYFLPEEI 537
               E + +   ++         +      + ++   +L   L   +V+  Q+       
Sbjct: 341 DKQAELSQIAAKLSDNEQSIAALEA-ELADFSDDP-DQLIEHLREQYVKLMQEEANLSND 398

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L  +     LK  + +  D     A  EA+ +  + G ++     +  + L    + 
Sbjct: 399 LTSLESQ-LASELKLAESKKADYAKLQADLEASQIQEQAGLEELEIARQALKGLLADYQS 457

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             + + ++ A  + ++T  +  +L ++  +  +  S EA+++
Sbjct: 458 QIQLVEKLEADYKHQQT-KMFELLDDLKNKQARSNSLEAILK 498


>gi|225559620|gb|EEH07902.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 866

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/271 (9%), Positives = 75/271 (27%), Gaps = 28/271 (10%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKLRYYYSQAIRDR 431
           +L  +  P    +   + E          +    +           +     Y +A+   
Sbjct: 166 RLDADEKPNGSHIEDDQRETSPSGDGHVISRAVENSVPKIGVTEPTETSTDDYEEAMAQM 225

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
                   +        Y ++    + +     +    S      S +    E  LL   
Sbjct: 226 RADHEMSELRWQEELHAYVERIDALQSKLKYLAKEAAESAKNAAASAEAGSLEKKLLE-- 283

Query: 492 INHPAILQEQYQ--ELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                I     +  +L+    D+   ++KL   +      Q                  +
Sbjct: 284 -KDEQIANLMEEGQKLSKTELDHRATIKKLRQSIAESAKSQ--------------AETKK 328

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-------KEEIEKQ 601
            L+++++ + +A   ++  E       +         K+    + +         +++ Q
Sbjct: 329 RLEKVEKDLVNAEDRASQAEIAERKALERLNSVSKAEKQLETATAEREASNATITDLKSQ 388

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +A+  ++ EA +    +        QI ++ 
Sbjct: 389 LARAVSRAEAAERKARMEATEAEKRQIAELR 419


>gi|195400072|ref|XP_002058642.1| GJ14200 [Drosophila virilis]
 gi|194142202|gb|EDW58610.1| GJ14200 [Drosophila virilis]
          Length = 2020

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 99/303 (32%), Gaps = 33/303 (10%)

Query: 361  SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
            + +    + A + L       ++ L +R    ++      +   E  ++      +   +
Sbjct: 960  NALEKRMQQALQALQTAKDDEIEKLQERLAALQAHIESLVQQHEETLIRAENEKQQALLM 1019

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
             +   QA+ +RL+ + +   TE     R  ++     +++  +  +++  +V  +   + 
Sbjct: 1020 AHRDKQAVAERLETVARDLKTEQEALDRSKREANARDEKQRAAIAMLKDEIVHMRTRDEE 1079

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEI 537
                       I     +++Q  +L  +R + + L +L   L        ++      E+
Sbjct: 1080 HK---------IKLEECIRKQELQLNSMREERDTLCRLSEELKMEIRLREDKMEATNNEL 1130

Query: 538  HQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-- 594
               L + +     +  L +++ D+    A +           ++     KR     R+  
Sbjct: 1131 QDALRKTKEGEGYIDSLRKELTDSRRQLADSNIERDKYSASNKELRDHVKRVESAKREQA 1190

Query: 595  --KEEIEKQIAQVTAKGEAEKTAIL----------------ISILHEVHIQIHQIESQEA 636
               EE  ++I  +     + +                       L  +  Q+ + + + A
Sbjct: 1191 RAIEEALQKINNLEETKNSLEIERTRVSTILKETENNFTKTTQELGAIKSQLQKTQLEFA 1250

Query: 637  MIE 639
              +
Sbjct: 1251 QKD 1253


>gi|254832047|ref|ZP_05236702.1| SbcC family exonuclease [Listeria monocytogenes 10403S]
          Length = 1023

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 53/403 (13%), Positives = 115/403 (28%), Gaps = 28/403 (6%)

Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312
            A     K    D  +  +  I ++ G                +       +        
Sbjct: 9   QAFGAYAKKEVIDFEKLGTEQIFVISGKTGAGKSTIFD-----AISFAIFGKANTFDRES 63

Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE--DPDSFIRCYGKTA 370
            S R     D +   +  A++  D +        +        G    P           
Sbjct: 64  FSMRSHFATDKEITEVTLAFRLKDKIYQISRIPQQEIAKQRGNGTTTSPQKAELYELIND 123

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             KL+  S+  V+   +   +             +   +  +  + D K +    Q +  
Sbjct: 124 EMKLLASSVRDVNTKMEELIQLNVDQFRQILMIPQGEFRELL--VSDSKEKEVILQRLAH 181

Query: 431 RL------QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR- 483
            +        L++K            KK A   +   P   +   +  +  + +  +++ 
Sbjct: 182 TVYYEKVENLLWEKQKQAEILVVEARKKVAELAELSLPGVEVSGKTTSEISVLQAEAIQS 241

Query: 484 EAALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-----EI 537
           E  +L  L N  +I+++Q  + +  +     +L   W  L     E      E      I
Sbjct: 242 EQMILTELENKLSIIRKQTSEAVEKVTLAKEQLLD-WQNLDKYTEEIATLEIEKDFYQAI 300

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV----DVRQGYQQALALYKRFRLLSR 593
             RL        L+  D           T E        +  +   Q   + K+   L+ 
Sbjct: 301 EVRLEAAKRASNLRSQDALCIRLKEQLETAEQTEKQVAFEAEEVKVQFSHVKKQKEALAE 360

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           ++ E+E     +    E E   + +  +  +  +  ++E +EA
Sbjct: 361 KEAELEINKRTLFQLEEMEPKILEL-EMISIQKRRAELEWKEA 402


>gi|126273109|ref|XP_001368555.1| PREDICTED: similar to chromosome-associated polypeptide
           [Monodelphis domestica]
          Length = 1217

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 36/346 (10%), Positives = 93/346 (26%), Gaps = 24/346 (6%)

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T     ++  L K     +   + +   L    K   +                    D 
Sbjct: 182 TEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDE 241

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            S  R        +L        D +   E + R   T     + E             +
Sbjct: 242 LSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQL-------SAE 294

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    Q  +  L+    +     +   R      R +  +   ++  + +  + K +  
Sbjct: 295 RQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSV 354

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK--LWSFL--FSDFVEQKYFLPE 535
               E  +               ++    ++ + E +   +   L      +  K     
Sbjct: 355 KEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIA 414

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            IH+ L +               +             D+ +   +   L +++  +  +K
Sbjct: 415 AIHKDLEDTE------------ANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKK 462

Query: 596 EEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMIEG 640
           +E++ +   +  +  AE +         E   Q+ +  + +A++ G
Sbjct: 463 DELQSERNYLWREENAEQQALAAKREDLEKKQQLLRAATGKAILNG 508


>gi|156104908|ref|NP_002462.2| myosin-6 [Homo sapiens]
 gi|317373582|sp|P13533|MYH6_HUMAN RecName: Full=Myosin-6; AltName: Full=Myosin heavy chain 6; AltName:
            Full=Myosin heavy chain, cardiac muscle alpha isoform;
            Short=MyHC-alpha
 gi|119586558|gb|EAW66154.1| myosin, heavy polypeptide 6, cardiac muscle, alpha (cardiomyopathy,
            hypertrophic 1), isoform CRA_a [Homo sapiens]
 gi|124376530|gb|AAI32668.1| Myosin, heavy chain 6, cardiac muscle, alpha [Homo sapiens]
 gi|302313131|gb|ADL14490.1| myosin, heavy chain 6, cardiac muscle, alpha [Homo sapiens]
          Length = 1939

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 55/155 (35%), Gaps = 8/155 (5%)

Query: 488  LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC----- 542
            +  +     +LQ + +EL  +       +KL      +  E+   L  +    +      
Sbjct: 1673 IAIVERRNNLLQAELEELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKM 1732

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            E    +L  +++  V++        +  I D     ++          L R K+ +E+ I
Sbjct: 1733 ESDLTQLQSEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTI 1792

Query: 603  AQVTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              +  + +  +   L      L ++  ++ ++E +
Sbjct: 1793 KDLQHRLDEAEQIALKGGKKQLQKLEARVRELEGE 1827


>gi|118100027|ref|XP_001232953.1| PREDICTED: similar to huntingtin interacting protein 1 [Gallus
           gallus]
          Length = 1018

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 61/562 (10%), Positives = 164/562 (29%), Gaps = 37/562 (6%)

Query: 90  QRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGI 149
           + L+  AG       P+ E++   +   + + +             ++K     +     
Sbjct: 17  RVLSRRAG----GSGPEAERESFERAQTVSINKAIN----TQEVAVKEKHARTCILGTHH 68

Query: 150 DSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFP 209
           +  A   + +        +     +      + + +    +  D+     +      ++ 
Sbjct: 69  EKGAQTFWSVVNRLPLSGNAVLCWKFCHVFHKLLRDGHSNVLKDSVRYKNELSDMSRMWG 128

Query: 210 IRSS-RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRR 268
             S   GQ+ +   + L         N           NL      L+   ++   +  +
Sbjct: 129 HLSEGYGQLCSIYLKLLRTKMEFHTKNP------RFPGNLQMSDRQLDEAGENDVNNFFQ 182

Query: 269 NSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGL 328
            +      +E  +++     + +    S   TA  + +L  L ++       +D     L
Sbjct: 183 LTVEMFDYLECELNLFQTVFSSLDMSRSVSVTAAGQCRLAPLIQVILDCSHLYDYTVKLL 242

Query: 329 RAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKR 388
              +  +            +      +      F R      F++LI       +     
Sbjct: 243 FKLHSCLPADTLQGHRDRFLEQFRKLKDL----FYRSSNLQYFKRLIQIPQLPENPPNFL 298

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD-RLQQLFQKYITEHSGYG 447
                S +                  I D       SQ++ D +   +F    +      
Sbjct: 299 RASALSEHISPVVVIPAEASSPDSEPITDLVEMETASQSLFDNKFDDIFGSSFSSDPFNF 358

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE--- 504
                  +    +   Q   +   +K +L    +  E   L        +  E  ++   
Sbjct: 359 NSQNGMNKDDKDRLIEQLYREIGALKEELESFKAESERRGLQLRGRISELEAELAEQRHL 418

Query: 505 ----LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
               L D  +   EL++L          Q+     E   +  E+ + +L ++    V++ 
Sbjct: 419 KQQALDDSEFLRTELEELKKQREDTEKAQRSLTEIERRAQANEQRYSKLKEKYSELVQNH 478

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAIL 617
                          +  +Q     +    + R+K+E+E   +++++ + +   E+  +L
Sbjct: 479 ADLLRKN-------AEVTKQVTVARQAQGDVEREKKELEDSFQRVSEQSQRKSQEQAEVL 531

Query: 618 ISILHEVHIQIHQIESQEAMIE 639
            ++  E+     +++  +  +E
Sbjct: 532 ETLKQELAASKQELQVLQGTLE 553


>gi|73973328|ref|XP_539003.2| PREDICTED: similar to filamin A interacting protein 1 isoform 1
           [Canis familiaris]
          Length = 1213

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 42/413 (10%), Positives = 115/413 (27%), Gaps = 28/413 (6%)

Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIIL------VEGYMDVLSLCQ 288
           N  E  +   G    +   +    +K+ +           +L      ++   DV+ + +
Sbjct: 43  NRKEDDVMASGTVKRHLKPSGESERKNKKPLELSKEDLIQLLSIMEGELQAREDVIHMLK 102

Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348
                         +    ++L  L    +L  +             +L           
Sbjct: 103 TEKTKPEVLEAHYGSAEPEKVLRVLHRDAILAQEKSIGEDVYEKPISELDRLEEKQKETY 162

Query: 349 NFVLLS---RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405
             +L       +     +        +     +          +   R     ++    +
Sbjct: 163 RRMLEQLLLAEKCHRRTVYELESEKHKHTDYMNKSDDFTNLLEQERERLKKLLEQEKAYQ 222

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465
              K   N  +  KLR    +     L  + ++ +       +  K     +  +   ++
Sbjct: 223 AR-KEKENAKRLNKLRDELVKLKSFALMLVDERQMHIEQLGLQSQKVQDLTQKLREEEEK 281

Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQELADIRYDNNELQKLWSFLF 523
           L   +    +  +K    E         H A    QE  +  A +    +  ++L   L 
Sbjct: 282 LKAITSKSKEDRQKLLKLEVDF-----EHKASRFSQEHEEMNAKLANQESHNRQLRLKLV 336

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDR-QVRDAGLWSATTEANIVDVRQGYQQAL 582
                 +       + +  E    EL  ++ + +  ++ L      A + ++R+   +  
Sbjct: 337 GLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLM-----AEVENLRKRVLEME 391

Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
              +       Q  E+ K++ +         +  L   + ++  ++ ++E  E
Sbjct: 392 GKDEEITKTESQCRELRKKLQEEEHH-----SRELKLEVEKLQKRMSELEKLE 439


>gi|24642557|ref|NP_727988.1| Chromosome-associated protein, isoform B [Drosophila melanogaster]
 gi|22832386|gb|AAN09411.1| Chromosome-associated protein, isoform B [Drosophila melanogaster]
 gi|115646462|gb|ABJ17066.1| IP16426p [Drosophila melanogaster]
          Length = 1054

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 79/229 (34%), Gaps = 15/229 (6%)

Query: 413 NHIKDQKLRYYYSQAIRD---RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
           + ++ QK R  Y+  I +   +L +L  +  +  +       +  +   ++G S+ + + 
Sbjct: 529 SRLEMQKKRTEYTSQIAEFEKKLSKLRNELKSTENNINSIVSEMQKTETKQGKSKDVFEK 588

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
              + +L K+  +R            ++ Q +    +     ++   +L   L S    Q
Sbjct: 589 VQGEIRLMKEELVRIEQ--YRAPKERSLAQCKASLESMTSTKSSLEAELKQELMSTLSSQ 646

Query: 530 KYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----- 582
                ++++  +    +   E   Q  +              N+   R    QAL     
Sbjct: 647 DQREIDQLNDDIRRLNQENKEAFTQRMQFEVRKNKLDNLLINNLFRRRDELIQALQEISV 706

Query: 583 -ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
               ++      +    EK+I +V +  + E+    +    ++  ++ Q
Sbjct: 707 EDRKRKLNNCKTELVSAEKRIKKVNS--DLEEIEKRVMEAVQLQKELQQ 753


>gi|297024|emb|CAA79675.1| cardiac alpha-myosin heavy chain [Homo sapiens]
          Length = 1939

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 55/155 (35%), Gaps = 8/155 (5%)

Query: 488  LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC----- 542
            +  +     +LQ + +EL  +       +KL      +  E+   L  +    +      
Sbjct: 1673 IAIVERRNNLLQAELEELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKM 1732

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            E    +L  +++  V++        +  I D     ++          L R K+ +E+ I
Sbjct: 1733 ESDLTQLQSEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTI 1792

Query: 603  AQVTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              +  + +  +   L      L ++  ++ ++E +
Sbjct: 1793 KDLQHRLDEAEQIALKGGKKQLQKLEARVRELEGE 1827


>gi|330897712|gb|EGH29131.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 1162

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELER 203

Query: 601 QIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQ 634
           Q+ ++  + + AEK     +   ++  Q+  +  Q
Sbjct: 204 QLERLHRQAQAAEKYQEYKAEERQLKAQLSALRWQ 238


>gi|322798360|gb|EFZ20088.1| hypothetical protein SINV_04881 [Solenopsis invicta]
          Length = 1228

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 40/332 (12%), Positives = 106/332 (31%), Gaps = 20/332 (6%)

Query: 321  FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380
             + ++           +    L   +    V +   +D  + ++   +   +  +  S  
Sbjct: 700  TNFNEIKEINLNNLNPVEKTLLKQVDTGCQVDIKNDKD-YNDVKDKLEENTQATVTISKD 758

Query: 381  LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440
            +     +   E          A  ++ L      + D  ++  Y Q     + +L ++  
Sbjct: 759  IQTSN-ELLKEEAVQTDEVVDANAKLQLDTLTKQLDD--IQVQYEQKCSQ-INKLTEELN 814

Query: 441  TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT--LINHPAIL 498
                      K+N  H+      +   +    + +L+ +   R   +LL+  + +   I 
Sbjct: 815  DMKKTLQILKKENCSHKTIVDEYKNSTEVLKKQLELAAEEKQRMEEILLSSDMTSKQKIA 874

Query: 499  Q---EQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
                E  ++++ +  +   ++KL   +   +  +E        I + L E     L  + 
Sbjct: 875  DYEYEHAEKISQLESNFETIEKLKRDIDQLNRNLETCQVEKNSIQEMLNENNKKLLELEN 934

Query: 554  DRQVRDAGLWSATTEAN-IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612
              +          TE   +    +   Q     +R   +     E++  I+++T     E
Sbjct: 935  RLEETTLKEQEKDTEITTLQKELKRMIQINEAAERNDNMME--AELKSSISELTQT--KE 990

Query: 613  KTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
                    + E+ I++   E+ E   + F  +
Sbjct: 991  SLLQQQQHIKELKIRL---ENSERSAKIFNLL 1019


>gi|298486338|ref|ZP_07004401.1| Chromosome partition protein smc [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159345|gb|EFI00403.1| Chromosome partition protein smc [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 1162

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELER 203

Query: 601 QIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQ 634
           Q+ ++  + + AEK     +   ++  Q+  +  Q
Sbjct: 204 QLERLHRQAQAAEKYQEYKAEERQLKAQLSALRWQ 238


>gi|289626388|ref|ZP_06459342.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649543|ref|ZP_06480886.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866313|gb|EGH01022.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 1162

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELER 203

Query: 601 QIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQ 634
           Q+ ++  + + AEK     +   ++  Q+  +  Q
Sbjct: 204 QLERLHRQAQAAEKYQEYKAEERQLKAQLSALRWQ 238


>gi|224074801|ref|XP_002190066.1| PREDICTED: similar to myosin, heavy chain 1, skeletal muscle, adult
            [Taeniopygia guttata]
          Length = 1944

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 83/277 (29%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  +L   +    +       +      ELE   K     ++D +      
Sbjct: 1356 EEEQEAKGELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1415

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1416 NAKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQKNFDKILAEWKQKYEETQAEL 1475

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+  S L     E         
Sbjct: 1476 EASQKESRSLSTELFKMKNAYEESLDHLETMKRENKNLQQEISDLTEQIAEGGK------ 1529

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +A + +     +       R   L  +  +
Sbjct: 1530 -----------AIHELEKVKKQIEQEKSEIQAALEEAEASLEHEEGKILR---LQLELNQ 1575

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1576 VKSEIDRKIAEKDEEIDQMKRNHLRIVDSMQSTLDAE 1612



 Score = 37.9 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 24/268 (8%), Positives = 80/268 (29%), Gaps = 17/268 (6%)

Query: 376  VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             +    +D     + E       +    ++         I+ +       + +   L ++
Sbjct: 1574 NQVKSEIDRKIAEKDEEIDQMKRNHLRIVDSMQSTLDAEIRSRNEALRLKKKMEGDLNEM 1633

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK-LSKKPSLREAALLLTLINH 494
              +    +       K     +     +Q  +  +L   + L ++ ++ E          
Sbjct: 1634 EIQLSHANRVAAEAQKNLRNTQAVLKDTQIHLDDALRTQEDLKEQVAMVERRA------- 1686

Query: 495  PAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
              +LQ + +EL          +K+    L       +    +       ++     + Q+
Sbjct: 1687 -NLLQAEIEELRAALEQTERSRKVAEQELLDASERVQLLHTQNTSLINTKKKLETDIAQI 1745

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKG 609
              ++ D    +   E                 K+ +     L R K+ +++ +  +  + 
Sbjct: 1746 QGEMEDTIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLDQTVKDLQHRL 1805

Query: 610  EAEKTAIL---ISILHEVHIQIHQIESQ 634
            +  +   L      + ++  ++ ++E +
Sbjct: 1806 DEAEQLALKGGKKQIQKLEARVRELEGE 1833


>gi|255557131|ref|XP_002519597.1| conserved hypothetical protein [Ricinus communis]
 gi|223541229|gb|EEF42783.1| conserved hypothetical protein [Ricinus communis]
          Length = 772

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 47/143 (32%), Gaps = 13/143 (9%)

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVE------QKYFLPEEIHQRLCERGFGELLK 551
           +  Q +EL  +  +        S +            +      ++ ++L ER      +
Sbjct: 89  ITRQREELQQMEIEVKAQMIARSEIIEMRNSFDAQIKEHEDSAAKLQEQLHERE-----Q 143

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            +    R          A  +D    + +   L ++ + L+  + E  +  ++       
Sbjct: 144 AIHDLERRMEEKERELHAIKLDNEAAWAKEDLLREQNKELATYRRE--RDHSEAERAQHI 201

Query: 612 EKTAILISILHEVHIQIHQIESQ 634
           +K   L   + E   QI +++ Q
Sbjct: 202 QKIRDLQEHIQEKERQILELQEQ 224


>gi|217967336|ref|YP_002352842.1| SMC domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217336435|gb|ACK42228.1| SMC domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 1082

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/296 (10%), Positives = 109/296 (36%), Gaps = 42/296 (14%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
            +++L  +   L+ ++ +   E R     +E       ++  +  I  +K++    + + 
Sbjct: 181 KWQELEEKRKELLGVIEELRAEVRIAERYNELKNKLEDVRKTLAFINLRKIKENIEKYLI 240

Query: 430 DR---------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           ++         L +L  + + +     + ++K            + +   +    L +  
Sbjct: 241 EKEKVEKRLLELNELISENLAKRENLNKGYEKLVEKVSSLEEVLKSIDQRIYDLSLRENI 300

Query: 481 SLREAALL----------LTLINHPAI-LQEQYQELADI--RYDNNELQKLWSFLFSDFV 527
            + +  +L            L+    + L+++ +E+ ++   ++++E  K+         
Sbjct: 301 YVEKKKILVENLKNIEKEKILLKDKILELKKREEEIGNLFQDFNHDEFSKI--------- 351

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ--ALALY 585
                  ++    L +    +   +++ +V+   +     +   +   +   +   +   
Sbjct: 352 ---EIELKKKEDYLQDLIVKK--GKIEDKVKSFEVLKDQPDIEELKFVKEKLENFIVKYR 406

Query: 586 KRFRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           K+   L R +EEIE ++ + +   K + +        + +++  + +++  EA +E
Sbjct: 407 KKLETLERYREEIESKLLEESKILKKKEDTYEKNRIEILKLNNILAELK--EATLE 460


>gi|257060331|ref|YP_003138219.1| hypothetical protein Cyan8802_2518 [Cyanothece sp. PCC 8802]
 gi|256590497|gb|ACV01384.1| hypothetical protein Cyan8802_2518 [Cyanothece sp. PCC 8802]
          Length = 1635

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 69/220 (31%), Gaps = 32/220 (14%)

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            I     +   +  + +RL+ +   +  +     +          +   SQR +  +LV 
Sbjct: 379 SIYSHHEKDIKNSDLFERLESILSHFPEKE----KELPPIVWDWIKLKVSQRTVAGALVN 434

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
               + P    + +    +  P       ++LA I+      Q++   LFS   +   ++
Sbjct: 435 NLGERTPK---SLIPYLSLCEPYTRANIAEKLAKIQ---PWDQEIRETLFSLIGDSSQWV 488

Query: 534 PEEIHQRLCE----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
            E++ Q+L +          L+ L  +          T     D  +    A  L K  +
Sbjct: 489 REKVIQQLSKVKITPEEAIYLETLLNRKSGDLRRGILTLLLNQDDTESIVAAERLLKSKK 548

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
           LL RQ                      L+  + +   QI 
Sbjct: 549 LLQRQ------------------AGLELLQEMIQQKRQIE 570


>gi|254382349|ref|ZP_04997709.1| large Ala/Glu-rich protein [Streptomyces sp. Mg1]
 gi|194341254|gb|EDX22220.1| large Ala/Glu-rich protein [Streptomyces sp. Mg1]
          Length = 581

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 79/222 (35%), Gaps = 7/222 (3%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            ++L    +K     +              +K  ++   +S++    L +K       LL
Sbjct: 331 AEKLTSDARKQALAATTAAEEQADAMVDAARKEAARITAESTIEGNSLVEKARTDADELL 390

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
           +      + ++E+ +EL        E+++L      +  EQ     E + + +       
Sbjct: 391 VGARTDASAIRERVEELRSR--VEAEVEELHERARRESAEQMKSAGERVDKLVRAATEQS 448

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ----KEEIEKQIAQ 604
           +  +   +   +   S  ++  I  VR+         ++   + R+      E + +  +
Sbjct: 449 VEAEAKAKALVSDASSEASKVRIAAVRKAEALLKEAEQKKADVVREVESTLSEAKAEAER 508

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
           +  +G  E   +L+    ++  +I +++     +E F   SG
Sbjct: 509 LVEEGRRE-LEVLVRRREDIQAEISRVQDVLEALESFEAPSG 549


>gi|66348076|emb|CAI95784.1| GRIP1 associated protein 1 [Homo sapiens]
          Length = 810

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 33/313 (10%), Positives = 95/313 (30%), Gaps = 8/313 (2%)

Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
                  ++L         R+ +  L   E          +    KL  +     +  + 
Sbjct: 185 APMPLAEVELKWEMEKEEKRLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQES-FC 243

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R    +     D R ++E   +      K Q  R    Q   +   Q   +   +  G  
Sbjct: 244 RLQTEKETLFNDSRNKIEELQQRKEADHKAQLARTQKLQQELEAANQSLAELRDQRQGER 303

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                  R    +  + +  + ++++ + +   +  +         +  ++ ++    + 
Sbjct: 304 LEHAAALRALQDQIQTAKTQELNMLREQTTGLAAELQQQQ----AEYEDLMGQKDDLNSQ 359

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
           ++       +L   L     E++    E    R        +L +L  +           
Sbjct: 360 LQESLRANSRLLEQLQEIGQEKEQLTQELQEARKSAEKRKAMLDELAMETLQEKSQHKEE 419

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
              +    +  ++ L +  R+    R+  E +K+  +   +G+  +       L  +   
Sbjct: 420 LGAVR--LRHEKEVLGVRARYERELRELHEDKKR-QEEELRGQIREEKARTRELETLQQT 476

Query: 628 IHQIESQEAMIEG 640
           + ++++Q   ++G
Sbjct: 477 VEELQAQVHSMDG 489


>gi|145226795|gb|ABP48145.1| vimentin [Ovis aries]
          Length = 466

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 509 RYDNNELQKLWSFLFSDFVEQKYF-----LPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
                E+++L   +     ++           E   RL E+   E+L++ + +       
Sbjct: 148 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFR 207

Query: 564 SATTEANIVDVR-----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-IL 617
                A++  +      +  Q+ +A  K+      + +E++ QI +   + + + +   L
Sbjct: 208 QDVDNASLARLDLERKVESLQEEIAFLKKLH--DEEIQELQAQIQEQHVQIDMDVSQPDL 265

Query: 618 ISILHEVHIQ 627
            + L +V  Q
Sbjct: 266 TAALRDVRQQ 275



 Score = 38.3 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 17/149 (11%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE------------ 543
            +       +  +R+   + + L + L     + K  L +   + + E            
Sbjct: 109 ELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDK 168

Query: 544 ----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                    L + + R            E     ++   Q           L R+ E ++
Sbjct: 169 ARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQ 228

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQI 628
           ++IA +    + E+   L + + E H+QI
Sbjct: 229 EEIAFLKKLHD-EEIQELQAQIQEQHVQI 256


>gi|119571300|gb|EAW50915.1| spectrin domain with coiled-coils 1, isoform CRA_b [Homo sapiens]
          Length = 784

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 89/280 (31%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   +    E+    
Sbjct: 496 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKMENGSLK 555

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   +    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 556 SHLQGEKQKATEASAVEQTAES--CEVQEMLKVARAEKDLLE--LSCNELRQELLKANGE 611

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 612 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 671

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + E    
Sbjct: 672 VEQHRAVKLHNNQLISELESSVIK----------LEEQKSDLERQLKTLTKQMKEETEEW 721

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 722 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 761


>gi|119719441|ref|YP_919936.1| SMC domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119524561|gb|ABL77933.1| SMC domain protein [Thermofilum pendens Hrk 5]
          Length = 784

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 60/160 (37%), Gaps = 17/160 (10%)

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           +L+++ ++L + +      +  +        E+K        +R       E L++    
Sbjct: 465 VLKKKLEDLREYKLTLINYEAAYEEYQRLLEERKNLQAALDAER-------EELERAKSG 517

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKT 614
           +   G        + + +R  Y + L L    + L ++   +  ++ ++  +     E  
Sbjct: 518 LSVIGAELKVVREDFLRLRTSYSK-LPLLDEIKKLEQEVSSLRSELQRLEPQYNKYLELE 576

Query: 615 AILISILHEVHIQIHQIES-------QEAMIEGFGKMSGR 647
             + ++  E+  + H++E        + AM+E F +   R
Sbjct: 577 KRIEALSREIEDKRHRLEGIRKDIDEKRAMLESFEERLAR 616


>gi|118590783|ref|ZP_01548184.1| Chromosome segregation ATPase [Stappia aggregata IAM 12614]
 gi|118436759|gb|EAV43399.1| Chromosome segregation ATPase [Stappia aggregata IAM 12614]
          Length = 1152

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 63/206 (30%), Gaps = 14/206 (6%)

Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE------AALLLTLINH 494
            +  G        A+ +  +    +   + +      K P LRE      AAL   +I  
Sbjct: 241 RDALGTAERHFAEAQKQVNEATGLQAESARIQAIAAHKLPELREDAAKAGAALQRLVIAR 300

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             +  +  +     +  + E ++L         EQ      +           ELL++ +
Sbjct: 301 NEL--DAEERRVKEKLQDLE-RRLVQLAEDIRREQSMVSENDEVLERLSEERAELLEENE 357

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                              V     Q   L       + ++ ++E+ +A+   + +    
Sbjct: 358 MVQERTESAREKVTEAEEAVGTLESQLSDLTAAEARATAERRQLERAVAESRQRAD---- 413

Query: 615 AILISILHEVHIQIHQIESQEAMIEG 640
             L++   +    + +I  + A  +G
Sbjct: 414 -RLLAQAQDAQKALAEINERMAEQDG 438


>gi|75076715|sp|Q4R7H3|SPDLY_MACFA RecName: Full=Protein Spindly; AltName: Full=Coiled-coil
           domain-containing protein 99
 gi|67969191|dbj|BAE00949.1| unnamed protein product [Macaca fascicularis]
          Length = 605

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 72/201 (35%), Gaps = 8/201 (3%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + DR   + ++ I+    Y    K+N  +R+Q    +  + + L       +   +E  
Sbjct: 260 EVEDRRAAMERQLISMKVKYQSLKKQNVFNREQMQRMKLQIATLLQMKGSQTEFEQQER- 318

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD-FVEQKYFLPEEIHQRLCERG 545
           LL  L      ++    E+ ++     + + L+  + S   V+         +  L +  
Sbjct: 319 LLAMLEQKNGEIKHLLGEIRNLE----KFKNLYESMESKPSVDSGALEDNTYYTDLLQMK 374

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
              L K+++    +  +                ++  A  +  +L   +  ++  ++ ++
Sbjct: 375 LDNLNKEIESTKGELSIQRMKALFESQRALDIERKLFANERCLQLSESENMKLRAKLDEL 434

Query: 606 TAKGEAEKTAI--LISILHEV 624
             K E E+T    ++    EV
Sbjct: 435 KLKYEPEETVEVPVLKKRREV 455


>gi|30172688|gb|AAP22331.1| unknown [Homo sapiens]
          Length = 317

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 97/283 (34%), Gaps = 18/283 (6%)

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQLF 436
            +P +D+  + + + +  +  +   +         N    + K +    +A+++++++  
Sbjct: 1   PVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYE 60

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
           Q    +        ++  ++   +   +          KL +     ++           
Sbjct: 61  QTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTE 120

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
           +   + +   +     +E++ + + L   +   E      E + ++L        L    
Sbjct: 121 LFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQI 180

Query: 555 RQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQ 601
           ++                 +  A  E  I  + +  Q+  A   + R  S  Q  ++E+Q
Sbjct: 181 QKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQ 240

Query: 602 IAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642
           ++   +  +  E+     +   EV  +++ ++S E A  EG G
Sbjct: 241 LSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 283


>gi|76669288|ref|XP_591383.2| PREDICTED: guanylate binding protein family, member 6 isoform 1
           [Bos taurus]
 gi|297472983|ref|XP_002686308.1| PREDICTED: guanylate binding protein family, member 6-like [Bos
           taurus]
 gi|296489264|gb|DAA31377.1| guanylate binding protein family, member 6-like [Bos taurus]
          Length = 628

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 77/235 (32%), Gaps = 17/235 (7%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKK------NARHRDQKGPSQRLMQSSLVKGK 475
            +YS+ +  RL    + +      +    ++       +  +D+    Q  +   +   K
Sbjct: 332 DHYSEQMTQRLSLPTETFQELLEVHAACEREAIAIFMESSFKDKDQEFQMGLLEVIKNKK 391

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ------ 529
                   EA++         + +   Q ++   +      KL+        +       
Sbjct: 392 EGFMLQNEEASIKYCQAKLDELSKALMQSISAGAFSVPGGHKLYRKAMERLQQDYCQVPR 451

Query: 530 -KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
                 E +   L  +   E  K + +  +                    ++   L ++ 
Sbjct: 452 KGVKENEVLQSFLQSQVVVE--KSILQADKALTDGEKAVAEERARNETAEKELELLRQKL 509

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQEAMI-EGF 641
           +   ++ E  ++ + +  A+   +      +IL E  + +  ++++QEA++ EGF
Sbjct: 510 QEQEQEMEAQQRSLQENIAQLTEKLERERENILREQTMMLEHKLKAQEALLKEGF 564


>gi|73536684|ref|XP_847761.1| kinesin [Leishmania major strain Friedlin]
 gi|321438675|emb|CBZ12434.1| putative kinesin [Leishmania major strain Friedlin]
          Length = 1665

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 42/361 (11%), Positives = 111/361 (30%), Gaps = 26/361 (7%)

Query: 283 VLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342
           V +L  A   + V +  T   +     L + +  +V      D   R       +     
Sbjct: 367 VQTLHYAAKAHRVLNKPTVKEDPSAMELRRANEELVALRRQLDEAQRNGNHYESIEAELR 426

Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402
               R+               +   +    +L      L D     E + ++     ERA
Sbjct: 427 EANMRLRREQKE-----ARLRKQVMERREAELAARMRELEDQREAYEAQMQALEGEAERA 481

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ---LFQKYITEHSGYGRYWKKNARHRDQ 459
             +   +        +    Y    +++  +Q         +      +  +        
Sbjct: 482 RAQQEKREEELRRAHEMATEYARDRLKEMEEQCVSAEAALRSREEELVKRQRAIEEKMRA 541

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ---ELADIRYDNNELQ 516
              S R     L + +   + +L+E   L ++ +   +  +  Q   +L  +   N +++
Sbjct: 542 AEASSRCRIDELQRQQKDMENALKEKERLASM-HEREMRHKYKQAEADLRAMEKRNFQME 600

Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576
           + WS              E++ QR+ E    +   +            A       ++++
Sbjct: 601 EEWSAKVRALEATAKQREEDVAQRIREAQGAQCRAE------------AAARRKEEELQR 648

Query: 577 GYQQALALYKRFR-LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            + +     +R +  ++ ++ E+++ + +     E  +   L   L +   ++ + E + 
Sbjct: 649 KWIEVDNEARRLQSEVAAKEAELKRCVQEANRSTEQ-REEELNERLRKAEYELSRRERET 707

Query: 636 A 636
           A
Sbjct: 708 A 708


>gi|7076883|emb|CAB75943.1| intermediate filament protein X1 [Branchiostoma lanceolatum]
          Length = 418

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 85/291 (29%), Gaps = 11/291 (3%)

Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
           +S G D +              I +   L D     E +    +             + +
Sbjct: 57  MSGGRDGELQGLRVHNDKLASYIEKVRDLEDRNRDLELQYAVLSRAPMSGAGGGDQSSAM 116

Query: 413 NHIKDQKLRYY--YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
               +++LR      Q +  R + L Q+     +       +           +  +   
Sbjct: 117 MDAYNEQLRKAQGMLQDLVGRREMLKQEMGGYEAEVAELTAQIQAEMAALAAMEEELSVL 176

Query: 471 LVKGKLSKKPSLREAALLLTLINHPAI-----LQEQYQELADIRYDNNE-LQKLWSFLFS 524
                 +     R    +  L  +        +QE  +    +  +  +  +  +     
Sbjct: 177 RKSVADANAEGKRLQGAMEMLSVNLDFQVQANIQEAEETRERVTLEVQQQAEAEFQVSVE 236

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
               +          +L E  +   L  L  Q +      +  + +I  V +  +QAL  
Sbjct: 237 SMRREFEANAGARKSQLEEM-YARRLAALQTQEQRLEAQISEAKRDIKAVEREIEQALRQ 295

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQ 634
             + R  + + +  E +   +  + + E     I+ L  V  ++  ++++Q
Sbjct: 296 LDKLRETTARLQ-AELEATDIEGQRQFEMMEATIAELEAVLNELRGRLQAQ 345


>gi|332559883|ref|ZP_08414205.1| ATPase [Rhodobacter sphaeroides WS8N]
 gi|332277595|gb|EGJ22910.1| ATPase [Rhodobacter sphaeroides WS8N]
          Length = 870

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 17/153 (11%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG---- 547
           ++H  I      +   I   +    +L   + S   E      + +  ++          
Sbjct: 375 LSHRYITDRFLPD-KAIDLVDEAASRLRMEVDSKPEELDALDRQILQAQIEAEALKKEDD 433

Query: 548 ----ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
               + L +L++++      +A   A     R   + A  L ++   L R + E+E    
Sbjct: 434 AASKDRLAKLEKELSGMTERAAEMTAQWQAERDKLEAARDLKEQ---LDRARAELE---- 486

Query: 604 QVTAKGEAEKTAIL-ISILHEVHIQIHQIESQE 635
           QV  +G   +   L   ++ ++  ++ + E++E
Sbjct: 487 QVKREGNLARAGELSYGVIPQIEKKLEEAEARE 519


>gi|331013368|gb|EGH93424.1| chromosome segregation protein SMC [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 1162

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELER 203

Query: 601 QIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQ 634
           Q+ ++  + + AEK     +   ++  Q+  +  Q
Sbjct: 204 QLERLHRQAQAAEKYQEYKAEERQLKAQLSALRWQ 238


>gi|310791633|gb|EFQ27160.1| RecF/RecN/SMC N terminal domain-containing protein [Glomerella
           graminicola M1.001]
          Length = 1199

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 74/230 (32%), Gaps = 30/230 (13%)

Query: 420 LRYYYSQAI--RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            R  Y + +   DR++   ++   E +      +K  +   Q       ++  L      
Sbjct: 677 WRDEYERLLQQSDRIRTQIEQKEQEITRAMGEVQKAEQKLRQLEAGFEPLRHELANKNGQ 736

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            +    E   L   I H   ++   +                          +  L  + 
Sbjct: 737 LEH---EKRRLNDAIRHREAVERDMKIFT-----------------ESLAANESELASDF 776

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            + L      +L+ +LD QV+   L     EA+        ++ +      + L  + ++
Sbjct: 777 KKSLSNAEERQLV-ELDAQVQ--RLQREWNEASKKRREAESRKQILETDINQNLQLRLDQ 833

Query: 598 IEKQIAQVT-AKGEAEKTAILISILHEVHIQIHQIESQ----EAMIEGFG 642
           +  Q  +   + G++         L ++  + + IE++    EA +E  G
Sbjct: 834 LNSQAFENNTSSGDSGSLKEAQRELKKLQRETNAIEAKIKEVEAKLEELG 883


>gi|302852494|ref|XP_002957767.1| hypothetical protein VOLCADRAFT_98864 [Volvox carteri f. nagariensis]
 gi|300256943|gb|EFJ41199.1| hypothetical protein VOLCADRAFT_98864 [Volvox carteri f. nagariensis]
          Length = 3124

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 62/212 (29%), Gaps = 25/212 (11%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R  Y+  +R  L    Q+                  R  +    +L  +   +   + + 
Sbjct: 1218 RRSYA-ELRTLLVARLQELQCSMEAAEAASTAERNVRVAQLVELQLQATDSGRSAAALQE 1276

Query: 481  SLR--EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
             L   E A    L+       E+ + LA++     E ++L   L +  +E+     E   
Sbjct: 1277 QLAVSEEARAALLVRAEEAKVERERLLAEVAEAQAEQERLREALDAAALERLTLEDELAG 1336

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
              +        L+ ++    D     + + +                   RLL +  +  
Sbjct: 1337 SDVERAELENRLRSVEAARSDVMAQLSFSNSA-----------------LRLLQQHLQS- 1378

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
                A         +   ++    E+ +Q+ +
Sbjct: 1379 ----ADAERLDLQAQLGTVLEERRELRVQLAE 1406


>gi|297700062|ref|XP_002827083.1| PREDICTED: myosin-3-like, partial [Pongo abelii]
          Length = 1470

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 84/265 (31%), Gaps = 17/265 (6%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
            +    +D     + E       + +  +E         ++ +       + +   L ++ 
Sbjct: 1098 QVKSEIDRKIAEKDEEIEQLKRNYQRTVETMQSALDAEVRSRNEAIRLKKKMEGDLNEIE 1157

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
             +    +       K     + Q   +Q  +  +L       +  L+E   L  +     
Sbjct: 1158 IQLSHANRQAAETLKHLRSVQGQLKDTQLHLDDAL-----RGQEDLKEQ--LAIVERRAN 1210

Query: 497  ILQEQYQELADIRYDNNELQKLW-SFLFS-----DFVEQKYFLPEEIHQRLCERGFGELL 550
            +LQ + +EL          +KL    L         +  +        ++L E    +L 
Sbjct: 1211 LLQAEVEELRATLEQTERARKLAEQELLDSNERVQLLHTQNTSLIHTKKKL-ETDLMQLQ 1269

Query: 551  KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
             +++   RDA       +  I D     ++          L R K+ +E+ +  +  + +
Sbjct: 1270 SEVEDASRDARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLD 1329

Query: 611  AEKTAIL---ISILHEVHIQIHQIE 632
              +   L      + ++  +I ++E
Sbjct: 1330 EAEQLALKGGKKQIQKLETRIRELE 1354


>gi|297693292|ref|XP_002823954.1| PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform
           3 [Pongo abelii]
          Length = 1392

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 111/355 (31%), Gaps = 14/355 (3%)

Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
           DV++L ++ ++  ++S   A+ E ++     L        +      +        +   
Sbjct: 572 DVIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENL 631

Query: 342 LIPGNRVNFVLLSRGEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399
               +          E   + +      K    + I   L   +     E E+      +
Sbjct: 632 QNQQDSERSAHAKEMEALRAKLMKVIKEKENSLEAIKSKLDKAEDQHLVEMEDTLNKLQE 691

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
              +++          +  K+   ++  ++   ++L      + +      +     +  
Sbjct: 692 AEIKVKELEVLQAKCNEQSKVIDNFTSQLKATEEKLLDLDALQKASSEGKSEMEKLRQQL 751

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
           +   +++    + K   S K S     L    +     L    + L+++      L+K  
Sbjct: 752 EAAEKQIKHLEIEKKAESSKVSSITRELQGRELK----LTNLQENLSEVSQVKETLEKEL 807

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L   F E              +R   E + +L ++     L S+  E    ++     
Sbjct: 808 QILKEKFAEASEEAVSV------QRSMQETVNKLHQKEEQFNLLSSDLEKLRENLADMEA 861

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIE 632
           +     +R   L + KE++E  IA++   +   + +   +   L      + +++
Sbjct: 862 KFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQ 916


>gi|296216282|ref|XP_002754499.1| PREDICTED: centrosomal protein of 164 kDa [Callithrix jacchus]
          Length = 1455

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 23/221 (10%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +    Q +R+ L+   Q          R  +   R +++    ++  Q++L   K   
Sbjct: 693 AEQEASLQKLREELESQQQAERAALEEKNR--QMLERLKEEMEALEKSEQAALNTVKEKA 750

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
              LRE            +  E+ + +A +     E       L S    +   +   + 
Sbjct: 751 LQQLRE-----------QLEGERKEAVARLE---KEHSAELERLCSSLEAKHQEVVSSLQ 796

Query: 539 QRLCERGFGEL------LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
           +++ E    E       L Q++ +V          E  +  + +  +Q +      R L 
Sbjct: 797 KKIEEAQQKEETQLQKCLGQVEHRVHQKAYHMIEYEQELSSLLREKRQEVEEEH-ERRLD 855

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           + KEE  + +A+   + EAE+  +   +L  +  ++ +++ 
Sbjct: 856 KMKEEHHQVMAKAREQYEAEERKLRAELLGHLTGELERLQR 896


>gi|261820477|ref|YP_003258583.1| poly(A) polymerase I [Pectobacterium wasabiae WPP163]
 gi|261604490|gb|ACX86976.1| poly(A) polymerase [Pectobacterium wasabiae WPP163]
          Length = 482

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 93/309 (30%), Gaps = 29/309 (9%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS--FIRCYGKTAFEKLIVESL 379
           D D        +   L     + G R     +  G +       R +     E+  V++ 
Sbjct: 92  DFDITTNATPDQVRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFRGHHDQHQEQQEVKNS 151

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY------YSQAIRDRLQ 433
                      +N   +  ++    +  + +    I D  +R Y        Q +   + 
Sbjct: 152 SQQAQSGMLLRDNIFGSVEEDAQRRDFSINSLYYSISDFSVRDYTNGLNDLRQGVIRMIG 211

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLSKKPSLREAALLLT-- 490
               +Y  +     R  +  A+      P        L           + E +L L   
Sbjct: 212 DPETRYREDPVRMLRAVRFAAKLNMTVSPETAEPIPRLASLLHDIPAARMFEESLKLLQS 271

Query: 491 --------LINHPAILQEQYQELADIRYD---NNELQKLWSFLF----SDFVEQKYFLPE 535
                   ++    + Q  +  L+   +    ++ L+++ + +               P 
Sbjct: 272 GYGYPTYKMLCEYQLFQPLFPLLSR-HFTPNGDSTLERMVAQVLKNTDQRLQNDMRVNPA 330

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +      E  ++L ++   A  +       + DV     ++LA+ KR   L R  
Sbjct: 331 FLFSAMLWYPLIEHAQKLAQESGLA--YFDAFALAMNDVLDEQCRSLAIPKRITSLVRDI 388

Query: 596 EEIEKQIAQ 604
            +++ ++++
Sbjct: 389 WQLQTRLSR 397


>gi|226287005|gb|EEH42518.1| myosin-9 [Paracoccidioides brasiliensis Pb18]
          Length = 2419

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 74/216 (34%), Gaps = 21/216 (9%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            R    + + ++ +      +          +  A     +   +     +L K ++ K+ 
Sbjct: 936  RDEQIRKLEEKAKND---ILERQKLEEERRRAEAEVHRIRKTLESERTLALDKEEIFKRL 992

Query: 481  SLREAAL---LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             LRE  L   L   I     L++Q  EL   +      +K+   L  +    +     +I
Sbjct: 993  QLREIELTEKLSGAIADQENLEDQLDELIASK------KKIEEEL--ELRRSQLEQAAQI 1044

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-SRQKE 596
              RL        ++  +   +   + +   +    D   G  Q + + K    L  ++ +
Sbjct: 1045 MSRLESEKKELQIQISELHAQLNDIENNHRK--RDDEVDGLSQEIKMLKSHLSLKEQKLQ 1102

Query: 597  EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            ++E ++     K + +    L +   E+ +   Q++
Sbjct: 1103 DLEDKL----LKTDQDLGIELANAAKELQVSKKQVK 1134


>gi|198414692|ref|XP_002123901.1| PREDICTED: similar to superfast myosin heavy chain, partial [Ciona
            intestinalis]
          Length = 2049

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 35/343 (10%), Positives = 104/343 (30%), Gaps = 24/343 (6%)

Query: 311  WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
            WKL  ++    +          K  ++        +          +           T 
Sbjct: 816  WKLYTKVKPLLNIVRVEDELKAKDEEIAELKDKYSHEEKLRKEYEEKCVSLLSEKNDLTL 875

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
              +   E+L   +   ++  + +           E   +   N+++    +    +   D
Sbjct: 876  QLQAEQENLADAEERNEQLVKVKGDLEGQVGDLSERLDEEEANNVQLSASKKKLEKQCED 935

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
                + +     +           + R      ++   S     K  K+        L  
Sbjct: 936  LGHDIEEAESNINHLEKDKQGLELKLRSLSADLEQRDDSIQRLNKEKKQLDQVNQQTL-- 993

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCE--RGF 546
                   ++++   L  I+    +L++    +     +++      E+  ++L    R  
Sbjct: 994  --EDLQAMEDKANHLGKIKI---KLEQQVEDIEDSLEQERKHKADLEKSKRKLENDLRSA 1048

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
             + +  L++            + +I  +    +    L  +   L+R+ +E++ ++ +  
Sbjct: 1049 QDTIMDLEKDKASLEDALRKRDFDINQLNGRIEDEQNLASQ---LNRKVKELQARVEETE 1105

Query: 607  AKGEAEKTA---------ILISILHEVHIQIHQIES-QEAMIE 639
            ++ + E+ A          L+  L ++  Q+ +     +A IE
Sbjct: 1106 SELDMERQARSKVERNRSELVRELDQLSEQLEEAGGATQAQIE 1148



 Score = 37.2 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 74/596 (12%), Positives = 156/596 (26%), Gaps = 67/596 (11%)

Query: 74   LSFLSALLGCSFIESVQRLAAIAGV-PLPVVDPKIEKKEKI--QTDLIRLIEVATDFFHH 130
            + F   L  C     ++ L    GV  +   +  + K      +  L    E  ++ F  
Sbjct: 505  IDFGMDLQAC-----IELLEKPMGVFSILEEESIVPKATDETFKNKLYEKHEKKSEAFIK 559

Query: 131  SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190
                 +           G+  + ++ +          S+ +  ++        I      
Sbjct: 560  PKVTKKGNAHFSVKHYAGVVDYNVDGWLNKNKDPLNDSVVQLFQKSTNKLMSAIFPETKE 619

Query: 191  DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN-SPETILFHKGKNL- 248
            +              +    R    +++     T          N   +  +      L 
Sbjct: 620  EPAGKKKKKGGSFQTVSALYREQLNKLMTNLRNTKPHFVRCLIPNEMKQCGIMDAALVLA 679

Query: 249  ----YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304
                      +   +K     ++         +     V ++  +        L   L  
Sbjct: 680  QLKCNGVLEGIRICRKGFPNRLQYPEFKQRYQILAASKVANMVDSKKATETILLHIELDT 739

Query: 305  YQLR--LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362
               +           VL    D      A     +       G  +        E     
Sbjct: 740  ALYKIGHTKIFFKAGVLADLEDQRDDILAIIMTKMQSK--ARGKLMRIEFKKMLE----- 792

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRET-ENRSFNTPDERAELEIHLKNCINHIKD---- 417
             R     A ++ I + L   D  W +   + +         +        I  +KD    
Sbjct: 793  -RQRAAKAIQRNIRKFLQFRDWQWWKLYTKVKPLLNIVRVEDELKAKDEEIAELKDKYSH 851

Query: 418  -QKLRYYYSQAIRDRLQQ---LFQKYITEHSGYGRYWKKNARHRDQKGP--------SQR 465
             +KLR  Y +     L +   L  +   E        ++N +    KG         S+R
Sbjct: 852  EEKLRKEYEEKCVSLLSEKNDLTLQLQAEQENLADAEERNEQLVKVKGDLEGQVGDLSER 911

Query: 466  LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525
            L +      +LS      E            +  +  +  ++I +               
Sbjct: 912  LDEEEANNVQLSASKKKLEK-------QCEDLGHDIEEAESNINH------------LEK 952

Query: 526  FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
              +        +   L +R        + R  ++        +  + D++    +A  L 
Sbjct: 953  DKQGLELKLRSLSADLEQRD-----DSIQRLNKEKKQLDQVNQQTLEDLQAMEDKANHLG 1007

Query: 586  KRFRLLSRQKEEIEKQI-AQVTAKGEAEKT-AILISILHEVHIQIHQIESQEAMIE 639
            K    L +Q E+IE  +  +   K + EK+   L + L      I  +E  +A +E
Sbjct: 1008 KIKIKLEQQVEDIEDSLEQERKHKADLEKSKRKLENDLRSAQDTIMDLEKDKASLE 1063


>gi|156835952|ref|XP_001642225.1| Tkp4 protein [Vanderwaltozyma polyspora DSM 70294]
 gi|156112690|gb|EDO14367.1| Tkp4 protein [Vanderwaltozyma polyspora DSM 70294]
          Length = 367

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 65/227 (28%), Gaps = 22/227 (9%)

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439
              ++++K+  E     T    +     +      I+D+      S  + + L       
Sbjct: 45  SNSELVFKKIKELEDEFTKLLLSPRSKEIIEKRQAIQDEISDLRTSIKVLNELSNFEDLA 104

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
            + +S   +   KN +    K  +    + S      +     +    L  + N+P  L+
Sbjct: 105 ESNNSVTMKPSSKNNKQIGFKLVNNNGEEVSYNAHNDAYPFDWK----LKGIKNYPRWLE 160

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE---IHQRLCERGFGELLKQLDRQ 556
           E  + L    +D+           +    +      E   +   L        L      
Sbjct: 161 EFKKFLEAHNFDD----------ITYLSNETVISTAEDHVLMNILRSNIQDPKLAMFLET 210

Query: 557 VRDAGLWSATTEANIV-----DVRQGYQQALALYKRFRLLSRQKEEI 598
              A +     E         + R+   + +AL K    L +Q  + 
Sbjct: 211 ANSAIILLNKIEKKYQETFTMEFRETLWKDIALNKNSSDLDKQLSDA 257


>gi|145549660|ref|XP_001460509.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428339|emb|CAK93112.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1851

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 40/322 (12%), Positives = 108/322 (33%), Gaps = 24/322 (7%)

Query: 341 HLIPGNRVNFVLLSRGEDPDSFIRCYG--KTAFEKLIVESLPLVDMLWKRETENRSFNTP 398
            +    +  F   +  +D +   R Y   +  ++++ V+     +  +  + +++     
Sbjct: 670 EIQQNTQFQFEWENHQKDMEKLRREYRLIEQEYQEMEVQVKLWKEKFYDEQQKHQDIRQQ 729

Query: 399 DERAELEIHLKNCINHIKDQKLRYYY-----SQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                 +      +N   D   + Y         ++++++    +          Y    
Sbjct: 730 LIEIRSQYESHTIVNTQSDYDKQRYQELEMEIIQLQEQMRLFSIREEKYKEQITTYSMTI 789

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ-ELADIRYDN 512
            + +      +++            +    E  L    I +  +L+++ + +L  I   +
Sbjct: 790 EKQKSNFDDLKKIKHLEYEIESQRIQYRDLERQLQDKSIEYEKLLKKKQEVKLETIEISS 849

Query: 513 NELQKLWSFLFSDFVEQKYFLP-------EEIHQRLCERGF---GELLKQLDRQVRDAGL 562
           N  +     L S     +  L        E I + + E       E +K + +   +  L
Sbjct: 850 NSDKLKIQELESQIQILRLQLQQLNSSKQEVIRETIRETVQVRSSEDIKMIAQLEEELQL 909

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
           W            Q   + +   +      ++ +E+E Q+  +++K + E     I+   
Sbjct: 910 WKTKYYELDRRKNQVVVETIREVQSLESDKQRIQELEYQLQSLSSK-KQEVIREYITETI 968

Query: 623 EV-----HIQIHQIESQEAMIE 639
           EV      ++I Q+E+Q + I+
Sbjct: 969 EVPLESDKLKIRQLETQLSNIQ 990


>gi|145531745|ref|XP_001451639.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419294|emb|CAK84242.1| unnamed protein product [Paramecium tetraurelia]
          Length = 417

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 41/397 (10%), Positives = 115/397 (28%), Gaps = 51/397 (12%)

Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345
           + +     +++     +T+   + +     R     D               V    I  
Sbjct: 1   MHKQLPNYILTPSTHYITKTPEKAINTSPFRGSSFSDKQSMTPNKQNIGYHYVQQQTINQ 60

Query: 346 NRVNFVLLSRGEDPDSF-IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           N  + +       P     + +     + L      +V      +++         + + 
Sbjct: 61  NTKHQIPYYENASPLVHESKQHLMQRVQNLEENLREIVKKY--DQSKEDLERERTIKYDS 118

Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
             +        +DQ+      Q +   ++ + ++   E       W        ++   Q
Sbjct: 119 NRNYSQLYQRYQDQEREVLKYQQVAKSIETMQKQVQRELQEQKEKWNAKNNEIQEQKKVQ 178

Query: 465 RLMQSSLVKGKLSK---KPSLREAALLLTLINHPAILQEQYQELADIRYDNN----ELQK 517
             +QS L + +      K  L+E     +   +  ++QE  Q   D+   N+    E  +
Sbjct: 179 EKLQSILKQKEREINDFKLKLKEEREFRSY-ENQRLVQEFTQTYQDLTLQNDQLIQENNE 237

Query: 518 LWSFLFSD--------FVEQKYFLPEEIHQRLCERGFGEL-------------------- 549
           L + +              Q     +     L +    ++                    
Sbjct: 238 LRTLILEIDNQPQPYSSANQSQQNIQADSDYLEDPQLRQIVQQYLTKNEESYLDQISDKQ 297

Query: 550 -------LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
                  +K++ + V    L    ++      +   +  + L +  +      +EI+ ++
Sbjct: 298 LRAAVSIIKEIFQTVTSQQLKEIKSQQFQQPKQISEEIEINLLEARKNREFLIKEIKNKM 357

Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            ++    E +         +E+  +I +++ Q + +E
Sbjct: 358 DKIVKSKEFDLI-----EFNEIQKEIEELKKQLSSVE 389


>gi|113913515|gb|ABI48901.1| RAD50 [Saccharomyces pastorianus]
          Length = 1312

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/282 (9%), Positives = 79/282 (28%), Gaps = 12/282 (4%)

Query: 357  EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
             D         K   E    E  PL++     E E       +  ++      +  N  +
Sbjct: 771  LDLLETKSTTLKNEKEFAESEIRPLIEKFIYLEREV---KELEHSSKTISDELSIYNTSE 827

Query: 417  DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            D        +  + ++    ++     S       +  R   +     +  + ++ + + 
Sbjct: 828  DGIKTVDELRDQQRKMNDSLRELRKNISDLQMEKDEKVRENSRMINLIKEKELNVSEIES 887

Query: 477  SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
            S          +     +   +  + + L          +     +      ++      
Sbjct: 888  SLTRKQNIDNSIKLKKANIKDIDSRIEALESQIISLQNKKNEAQNVLDITKNERDLQINN 947

Query: 537  IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
                  ++   ++ + +DR                 ++++   +  +   + + L  Q +
Sbjct: 948  -----KQKIVADVNRLIDRFQTIHNEAIDFESRGFNELQKTVIELESNKVQMKELKEQLD 1002

Query: 597  EIEKQIAQ----VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                ++ +    +      EK       L E+  Q+H IE++
Sbjct: 1003 SRLNEMNEEKRKLADSNNEEKNLKQNLELIELKSQLHNIEAE 1044


>gi|110597191|ref|ZP_01385480.1| Chromosome segregation protein SMC [Chlorobium ferrooxidans DSM
           13031]
 gi|110341382|gb|EAT59847.1| Chromosome segregation protein SMC [Chlorobium ferrooxidans DSM
           13031]
          Length = 1178

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 75/227 (33%), Gaps = 9/227 (3%)

Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461
            ++   ++  +  +K Q  +    + ++  +++L            R   +  R R +  
Sbjct: 192 DDVLAEVEKKVRSLKLQVRKAEKLRELKKEIRELDLALSWLSMEELREKLEPMRQRIR-- 249

Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521
             + L          ++    +E  L   L+     L E  + L +    N ++  L   
Sbjct: 250 -EEELRNHECTAKIATEDSITQEREL--GLLQEETTLSETQKSLNE---RNQQIHLLEKQ 303

Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
           L      QK  +              + + + ++   +    S   E +  ++   ++  
Sbjct: 304 LLQHEEHQKNLVSVIARTAAIITEKEQSISEQEQLKNELLQQSVPCEESCSELYDAFKSL 363

Query: 582 LALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
              + R  R L R+++E+ ++  +   +  A+    L     E   +
Sbjct: 364 ADEHDRLDRTLRRERDELSRERRRSAEQQSADNQLALTKRSLESKKE 410


>gi|21429722|gb|AAM50539.1| AT10315p [Drosophila melanogaster]
          Length = 1253

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 61/237 (25%), Gaps = 19/237 (8%)

Query: 391  ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
            E  +    +    LE   +  ++ I+    R +Y +   DR+++   +  +  S      
Sbjct: 871  EEYTRKRSERLGRLEEESRQLMSRIRRTADRGHYLKKSLDRIRRAPSREASFESNTEEEA 930

Query: 451  KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
               ++       S    +      + + +    E              ++   +L     
Sbjct: 931  IPASKSESCPATSPLTAEEEEYTSRRAARIQRMERE-----------SRQLISKLTRNSE 979

Query: 511  DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
                       L   +        +     + +    + L+ ++R            E  
Sbjct: 980  RGENFATKLDTLHEQYGPNPQLDQDRSSASMSQT-LEQRLEDIERVSATRAERLRILELQ 1038

Query: 571  IVDVRQGYQQA-------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
              ++              +          RQ+ E+ +Q         +E +  ++  
Sbjct: 1039 GNELIARLSSTSERGTAMINRIAEREATRRQEAELVEQTVPSEEAISSEASTRIVRH 1095


>gi|73983458|ref|XP_854171.1| PREDICTED: hypothetical protein XP_849078 [Canis familiaris]
          Length = 411

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 15/135 (11%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           S  +E+     + + Q L  R          L +++++Q+R+      T +    + R  
Sbjct: 192 SACLEEAARERDSLEQALRRRESEHEREVRCLYEEMEQQLREQRQRLRTQDLPREERRGL 251

Query: 578 YQQALALYKRFRLLSR---QKEEIEKQIAQVTAKGEAEKTAILISIL--HEVHIQIHQIE 632
               L L  R + L R   ++ E+E+Q+    ++    +       L    +  Q+   +
Sbjct: 252 L--ELELQNRDQELERAGLRQRELEQQLQARASEQLEAQAQNAQLWLAHEALRTQLEGAQ 309

Query: 633 SQEAMIEGFGKMSGR 647
            Q   +E  G + GR
Sbjct: 310 EQLRRLE--GDLQGR 322


>gi|77464984|ref|YP_354488.1| chaperone ClpB [Rhodobacter sphaeroides 2.4.1]
 gi|77389402|gb|ABA80587.1| Chaperone ClpB [Rhodobacter sphaeroides 2.4.1]
          Length = 870

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 17/153 (11%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG---- 547
           ++H  I      +   I   +    +L   + S   E      + +  ++          
Sbjct: 375 LSHRYITDRFLPD-KAIDLVDEAASRLRMEVDSKPEELDALDRQILQAQIEAEALKKEDD 433

Query: 548 ----ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
               + L +L++++      +A   A     R   + A  L ++   L R + E+E    
Sbjct: 434 AASKDRLAKLEKELSGMTERAAEMTAQWQAERDKLEAARDLKEQ---LDRARAELE---- 486

Query: 604 QVTAKGEAEKTAIL-ISILHEVHIQIHQIESQE 635
           QV  +G   +   L   ++ ++  ++ + E++E
Sbjct: 487 QVKREGNLARAGELSYGVIPQIEKKLEEAEARE 519


>gi|4417214|dbj|BAA36971.1| smooth muscle myosin heavy chain [Homo sapiens]
          Length = 1052

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 94/265 (35%), Gaps = 10/265 (3%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           +     +     E E        ++ ELE  L      +++++ R    QA R ++ Q  
Sbjct: 7   QEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQM 66

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                +        +K    +       + ++  ++          +E  LL   I+   
Sbjct: 67  LDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKLSKERKLLEERISDLT 126

Query: 497 I-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEIHQRLCER--GFGELLK 551
             L E+ ++  ++    N+ + + S L       E+     E++ ++L      F E + 
Sbjct: 127 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIA 186

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
            L  Q+ +  +  A  E  +          +A   +     ++  E+E  I+ +    ++
Sbjct: 187 DLQAQIAELKMQLAKKEEELQAALARLDDEIA---QKNNALKKIRELEGHISDLQEDLDS 243

Query: 612 EKTAILISILH--EVHIQIHQIESQ 634
           E+ A   +     ++  ++  ++++
Sbjct: 244 ERAARNKAEKQKRDLGEELEALKTE 268


>gi|126460853|ref|YP_001041967.1| ATPase [Rhodobacter sphaeroides ATCC 17029]
 gi|126102517|gb|ABN75195.1| ATPase AAA-2 domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 870

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 17/153 (11%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG---- 547
           ++H  I      +   I   +    +L   + S   E      + +  ++          
Sbjct: 375 LSHRYITDRFLPD-KAIDLVDEAASRLRMEVDSKPEELDALDRQILQAQIEAEALKKEDD 433

Query: 548 ----ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
               + L +L++++      +A   A     R   + A  L ++   L R + E+E    
Sbjct: 434 AASKDRLAKLEKELSGMTERAAEMTAQWQAERDKLEAARDLKEQ---LDRARAELE---- 486

Query: 604 QVTAKGEAEKTAIL-ISILHEVHIQIHQIESQE 635
           QV  +G   +   L   ++ ++  ++ + E++E
Sbjct: 487 QVKREGNLARAGELSYGVIPQIEKKLEEAEARE 519


>gi|327262735|ref|XP_003216179.1| PREDICTED: girdin-like isoform 2 [Anolis carolinensis]
          Length = 1852

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 69/226 (30%), Gaps = 17/226 (7%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             +     L+Q   +   +     +  K+  +  D    +       +V  +   +  ++E
Sbjct: 812  LEKENKLLEQETSQLEKDKKQLEKENKRLRQQADITDNTLEENNVKIVHLETENRSLIKE 871

Query: 485  AALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
              +   + I    I +E  + +     D   L  L   L +          E++  +   
Sbjct: 872  IGICKESSIRLKEIEKENKELVKRATIDKKTLVTLREDLVN----------EKLKTQQMN 921

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                +L  +L++   +        ++      +  +  L    +  L   + +E +    
Sbjct: 922  NDLEKLTHELEKIGLNKERLLHDEQSTDDSKYKLLESRLESTLKKSL---EIKEEKIAAL 978

Query: 604  QVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIEGFGKMSG 646
            +   +        L   L  V      + Q + +E M++     SG
Sbjct: 979  EARLEESTNLNQQLRQELKTVKKNYEALKQRQEEEKMVQNCSSRSG 1024


>gi|307249790|ref|ZP_07531768.1| Chromosome partition protein mukB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858205|gb|EFM90283.1| Chromosome partition protein mukB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 1496

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 80/236 (33%), Gaps = 10/236 (4%)

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +N ++ Q+    Y   + +  ++L ++ I       +     AR  D     + L    
Sbjct: 367 VMNALRHQEKIERYQDEVAELNEKLEEQQIALEEVSEQVETAQARADDADDQVEELRSQM 426

Query: 471 LVKGKLSKKPSLRE---AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
               +       R       +  L     +    + +L ++   + E       L     
Sbjct: 427 ADYQQALDAQQTRALQYQQAIAALEKAKQLCGLPHLDLHNVEDYHAEFAAQADDLTDQVF 486

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALY 585
           E +  L      +       EL+ ++  ++  +G W+          D +    QA+AL 
Sbjct: 487 ELEQRLSVSDMAKTQFEKAYELVCKISGEIDRSGAWNEARSLLTAFTDQKMQATQAVALR 546

Query: 586 KRFRLLSRQK---EEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEA 636
           ++   L ++    +  E+ +A+   K +   E    L S   +   ++  +E++ A
Sbjct: 547 QKLADLEQRLHQQQNAERLLAEFNQKAQTQFETAEELESYFEQQQARLEDVEAELA 602


>gi|302185112|ref|ZP_07261785.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           syringae 642]
          Length = 1162

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELER 203

Query: 601 QIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQ 634
           Q+ ++  + + AEK     +   ++  Q+  +  Q
Sbjct: 204 QLERLHRQAQAAEKYQEYKAEERQLKAQLSALRWQ 238


>gi|302836560|ref|XP_002949840.1| hypothetical protein VOLCADRAFT_117392 [Volvox carteri f.
           nagariensis]
 gi|300264749|gb|EFJ48943.1| hypothetical protein VOLCADRAFT_117392 [Volvox carteri f.
           nagariensis]
          Length = 1443

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 67/201 (33%), Gaps = 18/201 (8%)

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
           +L++        +    +      + R       R      V+  L +   L EA L   
Sbjct: 259 QLKKAEADLAAANQERAQLRVAAEQQRGPWFDQVRAGVEEKVRQSLQRAEEL-EARLERR 317

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL---CERGFG 547
              H A ++   ++ A +       ++    L S          +E  +RL    E    
Sbjct: 318 AAEHAAQMEAMREQHAKLEEQLGAARQHVQELQSGLAS--AVKSKECSERLCAAAESAAA 375

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           EL ++LD    +  +   +  +   +  + +    +   R   L ++ +E+++ ++Q   
Sbjct: 376 ELRRELDNLAAENRVLQESMRSMRQECTERWANEQSALGRVNGLEQRIDELQQALSQQ-- 433

Query: 608 KGEAEKTAILISILHEVHIQI 628
                     ++ L  +  Q+
Sbjct: 434 ----------MARLAALQRQL 444


>gi|297673223|ref|XP_002814676.1| PREDICTED: protein FAM184B-like [Pongo abelii]
          Length = 1209

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 40/119 (33%), Gaps = 2/119 (1%)

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
                          + + Q L +    +L ++L    +      A  EA+     +  +
Sbjct: 703 QQALEQCTSNYREDLQALKQ-LSDLEREKLQRELQETTQQNHAVKAQLEASHQRALRMLE 761

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           +A     +     R K+E    +         E  A+      E+  +  ++++Q+A++
Sbjct: 762 KARHQELKATE-ERLKKESSHSLQIQHQAHRLELQALEEKARQELQEERERMQAQQALL 819



 Score = 38.3 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/225 (7%), Positives = 62/225 (27%), Gaps = 14/225 (6%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
             Y   +         +                            +Q      +  K   
Sbjct: 636 EEYQDKLAAEEGTSSDEEERTKVLLKEGSDPQPPLGSLLKEKTSEIQRLEEDWQSQKAKL 695

Query: 482 LREAALLLTLINHPAILQEQYQELADIR-YDNNELQKLWSFLFSDFVEQKYFLPE----- 535
             + + +   +          ++L  ++   + E +KL   L     +      +     
Sbjct: 696 QAQVSQMQQALE--QCTSNYREDLQALKQLSDLEREKLQRELQETTQQNHAVKAQLEASH 753

Query: 536 ----EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
                + ++   +      ++L ++   +       +A+ ++++   ++A    +  R  
Sbjct: 754 QRALRMLEKARHQELKATEERLKKESSHSL--QIQHQAHRLELQALEEKARQELQEERER 811

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            + ++ +  +  +     +    +     L  +  ++  +  QEA
Sbjct: 812 MQAQQALLLESLRQELSEQQAACSGHQKDLEALQAELRALGRQEA 856


>gi|296221831|ref|XP_002756926.1| PREDICTED: leucine zipper putative tumor suppressor 1 isoform 1
           [Callithrix jacchus]
          Length = 595

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 75/249 (30%), Gaps = 27/249 (10%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  R +  + +   L    +             K  ++ +     SQR  Q   ++    
Sbjct: 279 KLQRSFEEKELASSLAYEERPRRCRDELEAPEPKGGSKLKQASQKSQRAQQVLHLQVLQL 338

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDN-NELQK--------------LWSFL 522
           ++   +    L +L+    +L+ + +     +      L++              L   L
Sbjct: 339 QQEKRQLRQELESLMKEQDLLETKLRSYEREKTSFGPALEETQWEVCQKSGEISLLKQQL 398

Query: 523 FSDFVE--QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS--ATTEANIVDVRQGY 578
                E   K      +  +L +        +L  Q  +  L +     E    ++++  
Sbjct: 399 KESQTEVNAKASEILGLKAQLKDTRGKLESLELRTQDLEGALRTKGLELEVCENELQRKK 458

Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTA------KGEAEKTAILISILHEVHIQIHQIE 632
            +A  L ++  LL ++ +E+  Q A            +       +  L     +  Q  
Sbjct: 459 NEAELLREKVNLLEQELQELRAQAALAREIVPPTFPEDVPALQRELERLRAELREERQGH 518

Query: 633 SQEAMIEGF 641
            Q +   GF
Sbjct: 519 DQMSS--GF 525


>gi|302665218|ref|XP_003024221.1| hypothetical protein TRV_01571 [Trichophyton verrucosum HKI 0517]
 gi|291188268|gb|EFE43610.1| hypothetical protein TRV_01571 [Trichophyton verrucosum HKI 0517]
          Length = 1289

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 71/235 (30%), Gaps = 27/235 (11%)

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           ++  Q  +T       Y +      ++   S+        +   S +P  RE + LL   
Sbjct: 753 EESLQGQLTGLEQRLAYSRDELSALEKNLESKSSEVDFAKRQIKSVQPKYREKSALL--- 809

Query: 493 NHPAILQEQYQEL--ADIRYDNNELQKL-----WSFLFSDFVEQKYFLPEEIHQRLC--- 542
                L +  +E+  +    ++   +       +  +     +Q     E   ++L    
Sbjct: 810 ---ESLDQSIEEIQSSVTEVEDKVYRDFCKRLGYKNIQEYDAQQGSLQEEAAEKKLQFTT 866

Query: 543 -----ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                E       ++L             ++ +   + +   +  ++ +R   L+ +   
Sbjct: 867 QKTKIENQLSFEKQRLQATEMRIDSLKTQSQKDEAMIAELEAERGSIQERLDELNDELAS 926

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK-----MSGR 647
           + + +         E +  L     E+  +   +E+    I G         SGR
Sbjct: 927 LNETLQDQQNLFS-ESSEKLAQQRRELQRRSKNVEATLKTISGLEADVQRHSSGR 980


>gi|288871138|ref|ZP_06116497.2| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288864646|gb|EFC96944.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
          Length = 419

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 54/146 (36%), Gaps = 17/146 (11%)

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
             ++  +  +P   +E Y+E+A  +    EL  ++S               +      ++
Sbjct: 269 EDIMRIIERYPD-FREIYEEMAQFQVKPEELVGMYSKALEILDRNTV----QYMIEEQKQ 323

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
                 ++++++ ++        E    ++            R + +  +K+EIEK+  +
Sbjct: 324 EIEGQKQEIEKRKQEIEGQKQEIEKRKQEIED----------RKQEIEDRKQEIEKRKQE 373

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQ 630
           +   G+ ++       + E   +I +
Sbjct: 374 IE--GQKQEIEAQKQEIKEQKQEIEE 397


>gi|242398545|ref|YP_002993969.1| hypothetical protein TSIB_0555 [Thermococcus sibiricus MM 739]
 gi|242264938|gb|ACS89620.1| hypothetical protein TSIB_0555 [Thermococcus sibiricus MM 739]
          Length = 803

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 96/275 (34%), Gaps = 13/275 (4%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH---IKDQKL 420
                 A      +  P      K E E    +  +   ++   ++   N    IK++  
Sbjct: 376 MLGESEACPVCKTKLTPEHRDRVKHEMEEEIKSLEEIVKQIRREIEEAENQKRTIKEEIE 435

Query: 421 R--YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
           R      + I ++LQ+  ++   + + +    +      +      R   S +       
Sbjct: 436 RVSKINVERI-EQLQKEIEEMKEKLAKHYTELEGIITELNNLENDIRPKISEIESEIKEI 494

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +  L E  L+  +   P   + + +EL   + + + L+ +         + K    +E  
Sbjct: 495 EERLNE--LIEEIGEKPEDPENELKELRKKKEEYDRLKPIADRYEKLLEDIKE--AQEKL 550

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++L  +   EL +++ +   D        + +   +R+       L ++ + L +  +++
Sbjct: 551 RKLENKKH-ELQEEIKKLGYDKQHHEKVRKEHEELLRKFESTKTELEEKTKSLEKNLKDL 609

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
            +   +   K   EK   L + L ++   ++ +E 
Sbjct: 610 TE--VEAEIKELEEKRNNLKAELDKIKKLLNDLER 642


>gi|224094819|ref|XP_002310250.1| predicted protein [Populus trichocarpa]
 gi|222853153|gb|EEE90700.1| predicted protein [Populus trichocarpa]
          Length = 1234

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 79/231 (34%), Gaps = 17/231 (7%)

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
             K+      + K +  + +    R  +  + +I +  G  R  +      + +   +  
Sbjct: 459 QSKHEAKQTAEDKEKEPWLKE-AVRSAENEKLFIRKKEGGERRQRSTFEKEENEKKLKAA 517

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
           ++    + +L K    +E       I    + +E  ++  +    + E ++L + L    
Sbjct: 518 LEQLENERRLKKALEQKEKE---KRIKEARVREETEKKQREAYETHEEEKRLRAAL---- 570

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQL-DRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
             ++      + + L +  +   LK++ +++  +  L  A         ++  ++     
Sbjct: 571 --EQEENERRLKEALVKEEYERRLKEIHEKEEYERRLREAADREENERRQRRIREREENE 628

Query: 586 KRFRLL------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           KR           R+  E E ++ +   + E E+         E   ++ +
Sbjct: 629 KRLNKALENEENERRIRENEGRLREAHQREEKERRLKEARQREENEKRLKE 679


>gi|224015390|ref|XP_002297350.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220967989|gb|EED86351.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 678

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 46/147 (31%), Gaps = 3/147 (2%)

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           + +    +     ++ +    N+  + L +                +  +  E    + L
Sbjct: 26  MFHCHVHVSAAAADVENEALMNDRYRSLVAEQHQLAGVGGGMNAYMLQAQ-QEMIHRQEL 84

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
           ++L   V  +   +A     I +  +   +      R R       E E  +A+   +  
Sbjct: 85  ERLM-LVAGSHPLTAAAALPINNELELLNRRKDELIRLRNTHNHIMEAEL-VARARNQHA 142

Query: 611 AEKTAILISILHEVHIQIHQIESQEAM 637
           + +   L  +L E   +  +++   A 
Sbjct: 143 SAEEMELFILLQEQRHREKELQEMAAA 169


>gi|242003478|ref|XP_002422748.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212505581|gb|EEB10010.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 1250

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 91/267 (34%), Gaps = 29/267 (10%)

Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS--GY 446
           E + ++     E  + +  +   +N ++ +  +    + +++  ++L +K + + +    
Sbjct: 651 EIQEKNKELKKEMEQAKKEVSLGMNSLQSESEKDELIRELKEEGEKLSKKELKQANLIKT 710

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
            R  +K+ +        Q       ++    +  + +E+          ++ ++  Q   
Sbjct: 711 LRAHEKSQQSIIDSNKIQIQNLMKTIEDLKMELSARKESE--------KSLGEKVKQMNK 762

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            I   + E+  L   +    V+ + +   +I     E    +  + L  +        + 
Sbjct: 763 KITRQDEEIGNLLGQMEKAVVKGEEY---KITLEAKENELIKCKELLATEDYKLQSAKSA 819

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            +    ++ +          +   LS Q ++ E ++     K   E+   L+  L E   
Sbjct: 820 ADYKTKELERLTSFKENAEIKLENLSEQLKKAE-EMHSEREKHYREEKNELMRRLQEAEE 878

Query: 627 Q---------------IHQIESQEAMI 638
           +               + Q+E+ +A I
Sbjct: 879 RNEEVAQSVSKATRPLLRQMEALQATI 905


>gi|115899464|ref|XP_790419.2| PREDICTED: similar to kinesin K39, putative [Strongylocentrotus
           purpuratus]
 gi|115971366|ref|XP_001190091.1| PREDICTED: similar to kinesin K39, putative [Strongylocentrotus
           purpuratus]
          Length = 1746

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 83/230 (36%), Gaps = 9/230 (3%)

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           L+  Y + +R  L +   +  +E         + A          +    + ++ ++   
Sbjct: 655 LQEQYDEKLRQELDKGRSETPSEEPVAFGMVNEEASQGGGVLTELKKDLMNKLEIEVQDL 714

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYD----NNELQKLWSFLFSDFVEQKYFLPE 535
             +R+  L    +      +   +ELA   ++    + E+++L   L     +       
Sbjct: 715 SEVRDDLLEQLEVATRDQ-ETVREELAAATFEKNNLSAEVEQLKDELLGIHFQADTSTDS 773

Query: 536 EIHQRLCERGFGELL---KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LL 591
             +    +    ++     +L  Q +D  +  +   A +  ++Q   +A  ++ + R  L
Sbjct: 774 PFYDNERDELNDKMQVMNSKLQSQEQDHEIEVSGYIAKMEALKQEIAKATQVHDQERGEL 833

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
             + +E+E Q+ +      +E+   L      +  +I +++   +  + F
Sbjct: 834 DNKIQELESQLKEKVDDVPSEELQGLGERNASLVSEIERMQRDLSDAKSF 883


>gi|42520544|ref|NP_966459.1| hypothetical protein WD0696 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410283|gb|AAS14393.1| hypothetical protein WD_0696 [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 562

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 54/154 (35%), Gaps = 15/154 (9%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558
           Q   ++  +++  N+ ++ L   L     E      E + ++L +      + +      
Sbjct: 390 QRIKEQEEELQDKNDVIKNLNDQLKDKKGETNEANKE-LQRKLKQSEANLTVLKEKNANL 448

Query: 559 DAGLWSATTEANIVDVRQGYQQALA--------------LYKRFRLLSRQKEEIEKQIAQ 604
           +  L            +Q  +Q +               L K    L R+KE++E++I Q
Sbjct: 449 ENDLKKIVEGLKDDHKKQLAEQLMETKKENNTLAETASQLSKELNELQREKEDLEREIRQ 508

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           +             +   E+    +Q++ +E M+
Sbjct: 509 LEPGRSLADELSEENTKREIEKLQYQLKEKEGML 542


>gi|326924021|ref|XP_003208231.1| PREDICTED: shootin-1-like [Meleagris gallopavo]
          Length = 859

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 70/223 (31%), Gaps = 16/223 (7%)

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             IK+ + +       +  L    +    +         K    +          Q  L 
Sbjct: 375 QQIKELREQIISVHEEKKTLAIELENLRCKLVEVIEEVNKVKEEKAALTTEVNKQQKLLE 434

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532
           K       ++ E   L         L+++ +  A   +   + +       S  + Q   
Sbjct: 435 KCNRVSVLAVEEYEELHVNFELEKNLRKKAESFAQEMFI-EQNKMKRQ---SQLLLQNSA 490

Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
             +++ + L +        +L   + +  L        + +  +      AL+K    L 
Sbjct: 491 PDQQLLKALDDN------AKLTHTLEEERLQHQKKVKELEEQLENQ----ALHKEISRLK 540

Query: 593 RQKEEIEKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIES 633
           +Q E +E+   ++  K     EK   L   + E+  +IHQ E+
Sbjct: 541 QQLELLEEDKKELELKCQNSEEKARDLKHTVDELQKRIHQSEN 583


>gi|320169056|gb|EFW45955.1| myosin-9 [Capsaspora owczarzaki ATCC 30864]
          Length = 1937

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
              E +    E+  ++L E+   E   +++ +   A L             +    A A 
Sbjct: 832 ARQEDEMRQKEQEVKKLQEKAEKEEAARIEMEKLHAKLLEEKNALATQLQLESEAAAEAE 891

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKT--AILISILHEVHIQIHQIES 633
             + R L+ ++ E+E  + ++ A+ + E+   A L +   ++  QI+++E 
Sbjct: 892 EMKNR-LAAKRAELEGIVGELEARLDEEEEIKAKLSTEKRKLEAQINEMEE 941


>gi|225856913|ref|YP_002738424.1| chromosome segregation protein SMC [Streptococcus pneumoniae P1031]
 gi|225724779|gb|ACO20631.1| chromosome segregation protein SMC [Streptococcus pneumoniae P1031]
          Length = 1179

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 58/155 (37%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E   + A +  +   L+ L   + +     +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAADEASLGSEEAALKTLQDQMATLTERLEAIKSQGEQARIQEQGLSLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E     +  G  QA      +R   ++  K+ +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEEKDRLSDGDWQADKENCQERLAAIASDKQNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 833


>gi|167772197|ref|ZP_02444250.1| hypothetical protein ANACOL_03572 [Anaerotruncus colihominis DSM
           17241]
 gi|167665638|gb|EDS09768.1| hypothetical protein ANACOL_03572 [Anaerotruncus colihominis DSM
           17241]
          Length = 481

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 28/75 (37%)

Query: 62  YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121
           +Y  +    G  +SF+    G ++ E+V RL       + V   K EK    +  L    
Sbjct: 52  WYDHAAERGGHAISFVQNFYGLTYPEAVTRLLNGEQGEVYVPAEKKEKGPPKEFALPPAN 111

Query: 122 EVATDFFHHSLKNAR 136
           +     + + L+   
Sbjct: 112 QTLRRVYAYLLQQRH 126


>gi|156055846|ref|XP_001593847.1| hypothetical protein SS1G_05275 [Sclerotinia sclerotiorum 1980]
 gi|154703059|gb|EDO02798.1| hypothetical protein SS1G_05275 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1220

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 37/339 (10%), Positives = 101/339 (29%), Gaps = 31/339 (9%)

Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383
           D           ++          +         D  ++ +         L+  S   + 
Sbjct: 85  DLAERTEQETTAEIFAQWEKAEMMMRA-----DLDAGTYTK-EQIEEIRTLMAASKLKMG 138

Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
           +  K+  +  +     E+               D+ +        + +  QL +    + 
Sbjct: 139 LSGKKAADVMTIEQLKEKIINLEKDLKEKGQHGDEIIAQLMELQDQMKQTQLVRAEGEKR 198

Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY- 502
               +   K A  +      ++  +      K  ++    EA +L   +    I      
Sbjct: 199 EARYKEQYKEAMAKVDAATKEQRERKERTDKKREEEIRQAEARILADALRDREIAVNLLQ 258

Query: 503 -------QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-----RLCERGFGELL 550
                  +EL  ++    E+++L     +   E +  +  EI +        ++   EL+
Sbjct: 259 RELTAKEEELDRMKATTEEVKELLEVEAAMRKEAEMKMEGEIAELQKQASQKDKKVEELI 318

Query: 551 KQLD------------RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++L             +Q  + G+       N+ +  +         +      RQ  E+
Sbjct: 319 QELKTLHERDDTVVLLQQQTEKGVGDKNGGRNLTETPKRSFSKRREKRDNLEFRRQIAEL 378

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           EK   Q+ +K    + + +  +   +++++   +   A+
Sbjct: 379 EKVQGQLESKNAELEVSAIKDLDERINLELRAADGDAAL 417


>gi|115943882|ref|XP_001197101.1| PREDICTED: similar to Viral A-type inclusion protein repeat
            containing protein [Strongylocentrotus purpuratus]
 gi|115953146|ref|XP_793458.2| PREDICTED: similar to Viral A-type inclusion protein repeat
            containing protein [Strongylocentrotus purpuratus]
          Length = 4054

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 30/399 (7%), Positives = 115/399 (28%), Gaps = 29/399 (7%)

Query: 258  LQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI 317
             +    +++        +  +   D +   +      +    T   +     + +   RI
Sbjct: 1172 AKAEECENINVRLEQQEMKSQQAFDEVIAERDREIKNLQMQLTQTEDNLKAKIDESEERI 1231

Query: 318  VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
            +   +          + ++ +          +  +    +D    +          L++E
Sbjct: 1232 IEAEESKRESDEELSRLLEQLADFQDSQKEASSSVEKAEKDIALKVVEVSNAKASLLLME 1291

Query: 378  SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ-----AIRDRL 432
                 +   K + +       +E      ++           L+   ++      I +  
Sbjct: 1292 EKYETEQSEKEKIKKAQSKLEEELMATRENVIQLEGQRSS--LKKLLAEMKSEVEILNEE 1349

Query: 433  QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
             ++  + +++        +K +     +       + +     L     +++   L   +
Sbjct: 1350 NKVLDEKLSQCESISTEIEKESDPVVCEDVIVSQAEHTTEAVPLQHPSDVQQEEALRCQL 1409

Query: 493  NHPA--------ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-RLCE 543
                        +++    E   +      ++ +   L    ++ +  L E I +  + E
Sbjct: 1410 QEKDEEVTKLESLVRAVQDEKLAME---ERMKGIEELLKDSVIDNEDMLRERIVELEVVE 1466

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +     +++L+   ++A      T   +  +   Y++     +    +  +K    ++I 
Sbjct: 1467 KTLKRRVQELESAQKEAEEKVDATLEEMKHLEDSYEERFKELRTSEHMQLEKAAELEEIG 1526

Query: 604  Q---------VTAKGEAEKTAILISI-LHEVHIQIHQIE 632
                           ++E     +   L EV  ++ +++
Sbjct: 1527 NHWKSETETLKEQLEDSESMNKNLKEKLQEVETELEELQ 1565


>gi|114626674|ref|XP_520254.2| PREDICTED: golgin 97 isoform 7 [Pan troglodytes]
          Length = 716

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/257 (10%), Positives = 71/257 (27%), Gaps = 27/257 (10%)

Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
                ++     + D   +    Q I+++L+   +K+        +   +  +    K  
Sbjct: 62  RRNEQIRKLEARLSDYAEQVRNLQKIKEKLEIALEKHQDSSMRKFQEQNETFQANRAKMA 121

Query: 463 SQRLMQSSLVKGKLSKKPSLREAA--LLLTLINHPA-----ILQEQYQELADIRYDNNEL 515
               +  +    + S+K    E    +L   +         + Q + +      +   EL
Sbjct: 122 EGLALALARKDQEWSEKMDQLEKEKNILTAQLQEMKNQSMNLFQRRDEMDELEGFQQQEL 181

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN----- 570
            K+   L            E        R      ++L    + +   S   E       
Sbjct: 182 SKIKHMLLKKEESLGKMEQEL---EARTRELSRTQEELMNSNQMSSDLSQKLEELQRHYS 238

Query: 571 --IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ---------VTAKGEAEKTAILIS 619
                             +   L ++++E++  I Q            + + +    L  
Sbjct: 239 TLEEQRDHMIASKTGAESKITALEQKEQELQALIQQLSIDLQKVTAETQEKEDVITHLQE 298

Query: 620 ILHEVHIQIHQ-IESQE 635
            +  +  ++ Q +  +E
Sbjct: 299 KVASLEKRLEQNLSGEE 315


>gi|73994919|ref|XP_534632.2| PREDICTED: similar to Golgi autoantigen, golgin subfamily a, 3
           [Canis familiaris]
          Length = 1530

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 31/274 (11%), Positives = 86/274 (31%), Gaps = 16/274 (5%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                  +     L+ +     + L  RE          +     +         +D  +
Sbjct: 731 DQQLEVLQQEHLDLLRQLTSTQETLQTREQSLGDLQVHYDELHARLEELQGEAASRDDTI 790

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           R+  ++ I   L+   Q   +      R  K+     ++       ++  L       + 
Sbjct: 791 RFLQNEKI--VLEVALQAARSGREELDRGAKRLEEGTEETSQILEQLRQELAVKSSQVEH 848

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             +EAA L         +Q+  ++    +      ++          + +     +  ++
Sbjct: 849 LQQEAATLK------KQIQKIKEQFLQQKVMVEAYRR------DATSKDQLIGELKATKK 896

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             +    EL ++L +   +             +V    QQ + L    +++ R++ E+E 
Sbjct: 897 RLDSELKELRQELIKLQGEKKSTEVEHVRLQKEVSHIRQQMVDLEGHLQVVQRERNEMET 956

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +  +  + + E+   L      +  QI +++ +
Sbjct: 957 HLQSL--QFDKEQVVALTEANQVLKKQIEELQQE 988


>gi|330973311|gb|EGH73377.1| chromosome segregation protein SMC [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 1162

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELER 203

Query: 601 QIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQ 634
           Q+ ++  + + AEK     +   ++  Q+  +  Q
Sbjct: 204 QLERLHRQAQAAEKYQEYKAEERQLKAQLSALRWQ 238


>gi|310791251|gb|EFQ26780.1| hypothetical protein GLRG_02600 [Glomerella graminicola M1.001]
          Length = 2254

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 69/181 (38%), Gaps = 8/181 (4%)

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
           K  + +  Q+ L     ++    RE   L           E+ + +A      ++++ L 
Sbjct: 101 KETNLQSTQAKLDMSTSAQATLEREKLALEEATKMKDAKLEELESIAKQA-HESDIKDLR 159

Query: 520 SFLFSDFVEQKYFLPE--EIHQRLCERGFGELLKQL----DRQVRDAGLWSATTEANIVD 573
           + + S   E+     E  E+ Q+L E       K++         +    S    A  VD
Sbjct: 160 AQVESCATERDEATSELRELRQKLEEAESERNEKEISMQKLNYALEEARQSNRQAAPSVD 219

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           V         L +  R L+R   ++E+Q A++T   + +K   + + +      + ++++
Sbjct: 220 VETLRTMISDLREELRGLNRDNADLERQ-AEITTAAQKQKDDEITAQMRHQDEYLLRMQT 278

Query: 634 Q 634
           +
Sbjct: 279 E 279


>gi|254574440|ref|XP_002494329.1| Transmembrane actin-binding protein involved in membrane
           cytoskeleton assembly and cell polarization [Pichia
           pastoris GS115]
 gi|238034128|emb|CAY72150.1| Transmembrane actin-binding protein involved in membrane
           cytoskeleton assembly and cell polarization [Pichia
           pastoris GS115]
 gi|328353853|emb|CCA40250.1| Huntingtin-interacting protein 1 [Pichia pastoris CBS 7435]
          Length = 1044

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 73/225 (32%), Gaps = 23/225 (10%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + ++ R+ +L +  +     + R      ++ ++    +  + S+    +      
Sbjct: 371 DQLQRQVQGRVGELERDLLILRGQFDRDQLMLRQYDERVKALETELSSTTQNAQQQLGAK 430

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                          +L    ++ A  +   + L KL+S L     E    L +    +L
Sbjct: 431 E-------------ELLGNIQEQAAQWKSKYDSLAKLYSQL---REEHLNLLSKFKTAQL 474

Query: 542 CERGFGELL---KQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSRQKEE 597
                 E +   ++++R ++   +  A         R   +++          L  +  E
Sbjct: 475 KASSAREAIDKREKIERDLKAKNIELADLIRERDRARLDLERSKSDKNSETERLEARLRE 534

Query: 598 IEKQIAQVTAKGEAEKTAILIS---ILHEVHIQIHQIESQEAMIE 639
            E ++A +     +E  + L      + E+  Q+      E+  E
Sbjct: 535 QETKLADIEKLHSSELKSFLSQHNKEIEELQNQLQASSLSESANE 579


>gi|225352556|ref|ZP_03743579.1| hypothetical protein BIFPSEUDO_04180 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156750|gb|EEG70144.1| hypothetical protein BIFPSEUDO_04180 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 904

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 50/130 (38%), Gaps = 11/130 (8%)

Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
           +E+ +++   + L+   S+L  +  +       E    L E    E L  L++++ D   
Sbjct: 415 EEIDELQRQVDRLKMEKSYLLGNPKDDADAQKAE--NELDESA-KERLDDLNKEIADKSE 471

Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISIL 621
                      ++  +      + R   L ++ +E+  Q  +   +G+  K++ +    +
Sbjct: 472 KLNG-------LKARWDAEKNGHNRIGDLRKKLDELRTQAERYEREGDLAKSSAINYGEI 524

Query: 622 HEVHIQIHQI 631
             +  +I Q 
Sbjct: 525 PAIQKEIAQA 534


>gi|195157534|ref|XP_002019651.1| GL12098 [Drosophila persimilis]
 gi|194116242|gb|EDW38285.1| GL12098 [Drosophila persimilis]
          Length = 1267

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 61/198 (30%), Gaps = 9/198 (4%)

Query: 437  QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            +             KK    +  K    +     L   K S    LRE + L   +    
Sbjct: 956  EPSEQREVQVQDKPKKKVVKKRSKPVINQKSDDLLADEKTSSNKCLREDSTLK--LPERT 1013

Query: 497  ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
                  + L+   +   +L+         F E+     ++    L +  + EL      +
Sbjct: 1014 SFMSAVECLSPKDFG-EKLKSWRQHQIRLFEEELAGKEQQYKNELEKMEYQEL-----SR 1067

Query: 557  VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                    A+ +A+         +   L +    L R  EE + Q+    ++   ++   
Sbjct: 1068 NTTLDETLASNQASKDTSIDYEAKLNELEQHICTLKRDIEE-QVQLFDKRSQEMQQENKQ 1126

Query: 617  LISILHEVHIQIHQIESQ 634
            L     ++  +I Q+E Q
Sbjct: 1127 LAIEKTKLKERIFQMEMQ 1144


>gi|194763793|ref|XP_001964017.1| GF20949 [Drosophila ananassae]
 gi|190618942|gb|EDV34466.1| GF20949 [Drosophila ananassae]
          Length = 640

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 72/243 (29%), Gaps = 35/243 (14%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNAR---HRDQKGPSQRLMQSSLVKGKLSKKPS 481
            QAI D +  L +      +    +     R        G S    + S+      +   
Sbjct: 381 IQAIIDEVDPLERVLSMRLAHDKDFAPSLNRLLVEAGLAGRSFHFTKDSMDYNDGRRIRY 440

Query: 482 LREAALLLTLIN------HPAILQEQYQEL----------ADIRYDNNELQKLWSFL--- 522
           LRE      ++       +    ++ + ++                N    +L   L   
Sbjct: 441 LRERLPTFEMLETRLFPMNDEEFEDLFDDIIYVPSFHSYYEVPEMQNPFHARLREALVAW 500

Query: 523 -----------FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
                       + + +      E   +R  +    +  K+++   +             
Sbjct: 501 MPSYRDEQQSWINKYKDSSPGNEEAEKRRERDMEEAQKRKEMEAVQKARREMMEKRRKEE 560

Query: 572 VDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           ++ ++  ++      KR R L  QK++ + + AQ   K + E        L     + ++
Sbjct: 561 IEAQELKKRERESAQKRRRALVEQKKKQDME-AQQKKKRDVEDQENGNKELKVQQKRRNE 619

Query: 631 IES 633
           +E+
Sbjct: 620 MEA 622


>gi|148665531|gb|EDK97947.1| mCG141708, isoform CRA_b [Mus musculus]
          Length = 3138

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 77/244 (31%), Gaps = 15/244 (6%)

Query: 413  NHIKDQKLRYYY--SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
              IK+++L       Q     L++  Q+ + E +      +K    + Q        +S 
Sbjct: 1856 AQIKNEQLESEMRNLQRCVSELEEEKQQLVKEKTKVESEIRKEYMEKIQGAQKGPANKSH 1915

Query: 471  LVKGKLSKKPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQK--------LWSF 521
              + +   +   +E   L    I +   +    + +  + + + E QK        L   
Sbjct: 1916 AKELQELLREKQQEVKQLQKDCIRYLERISALEKTVKALEFVHTESQKDLDVTKGNLAQA 1975

Query: 522  LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR----QVRDAGLWSATTEANIVDVRQG 577
            +      Q      +I     +     +L    +       +     +  +    D+ + 
Sbjct: 1976 VEHRKKAQAELSSFKILLDDTQSEAARVLADNLKLKKELQSNKESIKSQIKQKDEDLLRR 2035

Query: 578  YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
             +QA   +++ +   ++K +   +      +  AE    L     E+      ++S  A 
Sbjct: 2036 LEQAEEKHRKEKKNMQEKLDALHREKAHVEETLAEIQVSLTRKDQEMKELQGSLDSTLAQ 2095

Query: 638  IEGF 641
            +  F
Sbjct: 2096 LAAF 2099


>gi|40556160|ref|NP_955245.1| CNPV222 N1R/p28-like protein [Canarypox virus]
 gi|40233985|gb|AAR83568.1| CNPV222 N1R/p28-like protein [Canarypox virus]
          Length = 285

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 51/146 (34%), Gaps = 8/146 (5%)

Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFV------EQKYFLPEEIHQRLCERGFG 547
           H  +L      ++ + +     + +  ++   +       +       E+ +    +   
Sbjct: 104 HQDLLPHICSWISPL-FAIRVYKIINCYISGKYEFKLKHSDNTNKELLELIKEFNRKYDK 162

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
           + L+  +R            E    D+ +  ++     K  + L    +++   + ++  
Sbjct: 163 DTLESKERYKELDNYSKRMEEKYDRDIAETRERYREQRKEAKELKEHNKKLSNSVKRMEM 222

Query: 608 KGEAEKTAILISILHEVHIQIHQIES 633
           K   + T  L S L EV I++ ++E 
Sbjct: 223 KYNKD-TNKLKSELKEVKIELKKLEE 247


>gi|66045061|ref|YP_234902.1| SMC protein, N-terminal:structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255768|gb|AAY36864.1| SMC protein, N-terminal:Structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge [Pseudomonas
           syringae pv. syringae B728a]
          Length = 1162

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + +    +L++     +R+    +A         R+   +    ++    L+  +EE+E+
Sbjct: 144 IEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELER 203

Query: 601 QIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQ 634
           Q+ ++  + + AEK     +   ++  Q+  +  Q
Sbjct: 204 QLERLHRQAQAAEKYQEYKAEERQLKAQLSALRWQ 238


>gi|332256084|ref|XP_003277147.1| PREDICTED: serine/threonine-protein kinase TAO1 [Nomascus
           leucogenys]
          Length = 1011

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 53/158 (33%), Gaps = 25/158 (15%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              + + L + L            + + +RL E    +L    ++         +T    
Sbjct: 743 QTRQYKALRNHLLE---TTPKSEHKAVLKRLKEEQTRKLAILAEQYDHSINEMLSTQALR 799

Query: 571 IVDVRQGYQQALALYKRFRLL-----------------SRQKEEIEKQI---AQVTAKGE 610
           + + ++   Q L +  +  L                   R+  E+E+++     +  +  
Sbjct: 800 LDEAQEAECQVLKMQLQQELELLNAYQSKIKMQAEAQHDRELRELEQRVSLRRALLEQKI 859

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            E+   L +   E    + + +++E  IE F   S RL
Sbjct: 860 EEEMLALQNERTERIRSLLERQARE--IEAFDSESMRL 895


>gi|326926573|ref|XP_003209473.1| PREDICTED: cingulin-like protein 1-like [Meleagris gallopavo]
          Length = 1291

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                 EL  +LD  + +        E N  ++RQ  ++   +         +  +++ Q
Sbjct: 636 TRASLQELQLRLDESISEKDALKKNLEENEKELRQNLEELFQVKMEQEKHQTEIRDLQDQ 695

Query: 602 IAQVTAKGEAEK----------TAILISILHEVHIQIHQIESQEAMI 638
           ++++  + +  K             L+ +  ++   +   + QE ++
Sbjct: 696 LSEMHDELDNAKHTDEREKEVLIEELMQMKQDLQEILIAKDQQEEIL 742



 Score = 37.2 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 95/275 (34%), Gaps = 16/275 (5%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            R    TA +  + E +   DM   +  E       + +  LE   +N      ++     
Sbjct: 745  RERELTALKGALKEEVSNHDMEMDKLKEQHDKEMLNLQQSLEKATENAAVLASERDAVEE 804

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKN--------ARHRDQKGPSQRLMQSSLVKGK 475
               +I +++++L +              KN            ++    ++L +      +
Sbjct: 805  VRNSIENQVKKLTEANTQLKRTVDELETKNEELYKQFDNMKGEENSMKEKLKRYKDENQQ 864

Query: 476  LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            L +     E      +    ++  +      +IR  + E Q+L   L  +   ++    E
Sbjct: 865  LEEALKYAEKEAKELMALKASLESQLENMQENIRCISQERQQLTQQLKDETHHKEQL--E 922

Query: 536  EIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            +I   +        + +++L  ++ +    S T+   + +    Y++     +    + R
Sbjct: 923  KIKNEMENERWQLNKTVEKLQEEMAEIVEASRTSTVELQNQLDEYKE--KNRRELADVQR 980

Query: 594  QKEE--IEKQIAQVTAKGEAEKTAILISILHEVHI 626
            Q +E  +E + +++T     ++  +L   L +   
Sbjct: 981  QLKEKNLEVEKSRLTTIRMQDEMRLLEENLRDHQR 1015


>gi|312131267|ref|YP_003998607.1| hypothetical protein Lbys_2592 [Leadbetterella byssophila DSM
           17132]
 gi|311907813|gb|ADQ18254.1| hypothetical protein Lbys_2592 [Leadbetterella byssophila DSM
           17132]
          Length = 1080

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 92/284 (32%), Gaps = 17/284 (5%)

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
             + + +   +   +  +    +       D         K      +D+K      Q  
Sbjct: 493 QEYSQDVENQVNKAENQFDELVKKSRDFKKDLNTIENELKKKKQLDFQDKKDLDRLLQK- 551

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           ++ L +  Q    +         +  +   Q      ++Q  L +   SK   + E   L
Sbjct: 552 KEELNKEIQDLKNQLQELLEKQSRFEQQSPQLQQKMEMIQKMLNELMESKDSKVLEE--L 609

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCE-RGF 546
             ++   ++ ++   +L     +   L K        F E Q+    EE    L E    
Sbjct: 610 KKMME-KSLDEKSLDQLEKFNKNQRNLDKELDRTLKLFQELQRKQKIEETSNELKELAEE 668

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-------RFRLLSRQKEEIE 599
            E L + D   +D    +   E     +     ++  L K       +   +S  +++ +
Sbjct: 669 QEKLSEADANPQDQEKINQKFEDIKKKLEDIENRSNELNKSFDPMDDKQSEISEDQKQAK 728

Query: 600 KQIAQ----VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           K+++Q      +K +      +  +  E+  Q+   E Q+A ++
Sbjct: 729 KELSQQNKDAASKAQKNAAKKMKQMAEEMEQQMQSAEMQQAQVD 772


>gi|301604043|ref|XP_002931679.1| PREDICTED: hypothetical protein LOC100491703 [Xenopus (Silurana)
           tropicalis]
          Length = 1472

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 65/199 (32%), Gaps = 6/199 (3%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
             ++ ++    ++ + +         +N +   Q+  S         K KL +     + 
Sbjct: 172 NEMKRKMLAAEKEMLHKQIQEQEKRIENWKSEFQRESSLLQAFHDEQKKKLCEVEMKNQN 231

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQK-LWSFLFSDFVEQKYFLPEEIHQRLCER 544
            L   +  H   + +  ++L   +    E +      L   + +    +       L  +
Sbjct: 232 ELTEEMKRHEDFINKIQKDLEKEKSIYEEQKARARKHLEDLYNKSAVKIQAVFRAHLIYK 291

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
            +  +LK    + +         E    ++ Q  +  L   ++  +  ++K E +K+IA+
Sbjct: 292 RYAPVLKYKKEERKGKKEQQLKLENEKKEMDQKIRLKLEEKRQKEVERKEKHEYQKRIAE 351

Query: 605 VTAKGEAEKTAILISILHE 623
                E      L   L +
Sbjct: 352 -----EMAIQESLKQKLRQ 365


>gi|253689485|ref|YP_003018675.1| poly(A) polymerase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251756063|gb|ACT14139.1| poly(A) polymerase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 482

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 91/309 (29%), Gaps = 29/309 (9%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS--FIRCYGKTAFEKLIVESL 379
           D D        +   L     + G R     +  G +       R +     E+   ++ 
Sbjct: 92  DFDITTNATPDQVRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFRGHHDQHQEQQETKNS 151

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY------YSQAIRDRLQ 433
                      +N   +  ++    +  + +    I D  +R Y        Q +   + 
Sbjct: 152 SQQAQSGMLLRDNIFGSVEEDAQRRDFSINSLYYSIADFSVRDYTGGLNDLRQGVIRMIG 211

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLSKKPSLREAALLLT-- 490
               +Y  +     R  +  A+      P        L           + E +L L   
Sbjct: 212 DPETRYREDPVRMLRAVRFAAKLNMTVSPETAEPIPRLASLLHDIPAARMFEESLKLLQS 271

Query: 491 --------LINHPAILQEQYQELADIRYD---NNELQKLWSFLF----SDFVEQKYFLPE 535
                   ++    + Q  +  L+   +    ++ L+++ + +               P 
Sbjct: 272 GHGYPTYKMLCEYQLFQPLFPLLSRY-FTPNGDSTLERMVAQVLKNTDQRLQNNMRVNPA 330

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            +   +      E  ++L ++   A  +         DV     ++LA+ KR   L R  
Sbjct: 331 FLFSAMLWYPLIEHAQKLAQESGLA--YFDAFSLATNDVLDEQCRSLAIPKRITSLVRDI 388

Query: 596 EEIEKQIAQ 604
            +++ ++++
Sbjct: 389 WQLQTRLSR 397


>gi|225859041|ref|YP_002740551.1| chromosome segregation protein SMC [Streptococcus pneumoniae 70585]
 gi|225721362|gb|ACO17216.1| chromosome segregation protein SMC [Streptococcus pneumoniae 70585]
          Length = 1179

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 8/155 (5%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            + +E   + A +R +   L+ L   +       +    +    R+ E+G     +Q  +
Sbjct: 679 QLQKEIAADEASLRSEEVALKTLQDEMARLTESLEAIKSQGEQARIQEQGLFLAYQQTSQ 738

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGE--A 611
           QV +        E     + +G  QA      +R   ++  K+ +E +I ++ +      
Sbjct: 739 QVEELETLWKLQEEEKDRLSEGDWQADKEKCQERLAAIASDKQNLEAEIEEIKSNKNAIQ 798

Query: 612 EKTAILISILHEVHIQIHQIESQE----AMIEGFG 642
           E+   L   L +  +   +++ Q+    A IE  G
Sbjct: 799 ERYQNLQEELAQARLLKTELQGQKRYEVADIERLG 833


>gi|221475743|ref|NP_001137834.1| cytoplasmic linker protein 190, isoform L [Drosophila melanogaster]
 gi|220902062|gb|ACL83040.1| cytoplasmic linker protein 190, isoform L [Drosophila melanogaster]
          Length = 1465

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 80/242 (33%), Gaps = 20/242 (8%)

Query: 405  EIHLKNCINHIKDQKLR-YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
               ++     IKD  ++     + + ++LQ    +   + +      +   + ++ +G  
Sbjct: 1078 LQQVQEANGDIKDSLVKVEELVKVLEEKLQAATSQLDAQQATNKELQELLVKSQENEG-- 1135

Query: 464  QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLW 519
              L   SL   +  ++       L   L      L+E   +L +    +        ++ 
Sbjct: 1136 -NLQGESLAVTEKLQQLEQANGELKEALCQKENGLKELQGKLDESNTVLESQKKSHNEIQ 1194

Query: 520  SFLFSDFVEQKYFLPE--EIHQRLCE--RGFGELLKQLDR--QVRDAGLWSATTEANIVD 573
              L     +++    E  ++ ++L +  +   EL K L +   + + G    T  A    
Sbjct: 1195 DKLEQAQQKERTLQEETSKLAEQLSQLKQANEELQKSLQQKQLLLEKGNEFDTQLAEYQK 1254

Query: 574  VRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
            V      A ++       L  +  E+E  + Q       +          E+  Q+  +E
Sbjct: 1255 VIDEMDDAASVKSALLEQLQNRVAELETALRQAN-----DAQKTAYLETKELRRQLESLE 1309

Query: 633  SQ 634
             +
Sbjct: 1310 LE 1311


>gi|145529279|ref|XP_001450428.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418039|emb|CAK83031.1| unnamed protein product [Paramecium tetraurelia]
          Length = 606

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 54/160 (33%), Gaps = 13/160 (8%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL---CERGFGE 548
           I  P       ++L           +L      + ++  +    E+ ++L    +     
Sbjct: 246 IRFPDTFPPLARDLVRKILRLEPQDRLR---LEEVLKHPWLQNAEVLEQLPIVTKNPLEN 302

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           L+ Q   +  ++   +      I ++++   +      +  L  +Q  E  K++ +V   
Sbjct: 303 LVSQQISKFSESRKNNNNHLLKISELKKSINETQIQIMKGELEKQQLSEKLKELQEVNDD 362

Query: 609 G-------EAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
                     EK   +    + +  +I+Q++ +    E F
Sbjct: 363 QTQSPNLVSPEKIVKIEEKYNRLKKEINQLQKEIIQNEMF 402


>gi|146308553|ref|YP_001189018.1| SMC domain-containing protein [Pseudomonas mendocina ymp]
 gi|145576754|gb|ABP86286.1| SMC domain protein [Pseudomonas mendocina ymp]
          Length = 1144

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 72/251 (28%), Gaps = 19/251 (7%)

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
            +  +  S     ++  L          +   + R    Q    + +             
Sbjct: 316 MQAQQRHSSEREHQQLWLASRYARQCLSLHQSEERSLAEQRDALQARLRATPQRARLGEL 375

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
              W+     R Q    Q+ +++ + + +       R+   L              Q  A
Sbjct: 376 LGGWRAQFDQRGQLLMRQQTLRAGMAQEREQLATLQRQRDQLAA--QQTDAATRLEQAQA 433

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSA 565
                ++ELQ L                  + QR  + +  G  L +L++  +     + 
Sbjct: 434 REAGQHSELQALL----------GADDEAGLRQRWQQLQVQGRALDRLEQLAQSREQMAE 483

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625
                   + Q + Q  A       L  + + +++Q+A      + EK       + ++ 
Sbjct: 484 QIAELTPRLAQLHTQHAAKNDEIIGLRERYKVLKQQVA------DKEKLLEQEQRIQDLE 537

Query: 626 IQIHQIESQEA 636
                ++  EA
Sbjct: 538 AYRAHLQPGEA 548


>gi|52352673|gb|AAU43786.1| myosin heavy chain [Brugia malayi]
          Length = 599

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +++R  Y    +       +K     +       +    RD      +  + S     LS
Sbjct: 314 EEIREQYLNMEKKATLLQSEKEEMSVAMDQAERTRKQSERDANEAHVQCNELSAQAESLS 373

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
                 E  LL    +    L E        +  +++  +L   L     ++     + I
Sbjct: 374 SVKKKLETELLAIQADLDETLNEYKASEERYKAASSDAARLAEQLRQ--EQENSLQNDRI 431

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKRFRLLSRQKE 596
            + L  +   E+  +LD     A        A +   +R+   +     +R++  ++   
Sbjct: 432 RKALESQ-LKEMQARLDEAEAAALKGGKKVIAKLESRIRELESELDGEQRRYQETNKSLT 490

Query: 597 EIEKQIAQVTAKGEAEK---------TAILISILHEVHIQIHQIES 633
           + E++I ++  + + ++            L + L     QI + E 
Sbjct: 491 KHERRIRELQFQVDEDRKNAERTRDLIEKLQNKLKSQKKQIEEAEE 536


>gi|73998563|ref|XP_544016.2| PREDICTED: similar to Structural maintenance of chromosome 3
           (Chondroitin sulfate proteoglycan 6)
           (Chromosome-associated polypeptide) (hCAP) (Bamacan)
           (Basement membrane-associated chondroitin proteoglycan)
           isoform 1 [Canis familiaris]
          Length = 1215

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 36/346 (10%), Positives = 93/346 (26%), Gaps = 24/346 (6%)

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T     ++  L K     +   + +   L    K   +                    D 
Sbjct: 169 TEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDE 228

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            S  R        +L        D +   E + R   T     + E             +
Sbjct: 229 LSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQL-------SAE 281

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    Q  +  L+    +     +   R      R +  +   ++  + +  + K +  
Sbjct: 282 RQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSV 341

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK--LWSFL--FSDFVEQKYFLPE 535
               E  +               ++    ++ + E +   +   L      +  K     
Sbjct: 342 KEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIA 401

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            IH+ L +               +             D+ +   +   L +++  +  +K
Sbjct: 402 AIHKDLEDTE------------ANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKK 449

Query: 596 EEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMIEG 640
           +E++ +   +  +  AE +         E   Q+ +  + +A++ G
Sbjct: 450 DELQSERNYLWREENAEQQALAAKREDLEKKQQLLRAATGKAILNG 495


>gi|73967068|ref|XP_868322.1| PREDICTED: similar to TAO kinase 1 isoform 3 [Canis familiaris]
          Length = 999

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 53/158 (33%), Gaps = 25/158 (15%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              + + L + L            + + +RL E    +L    ++         +T    
Sbjct: 731 QTRQYKALRNHLLE---TTPKSEHKAVLKRLKEEQTRKLAILAEQYDHSINEMLSTQALR 787

Query: 571 IVDVRQGYQQALALYKRFRLL-----------------SRQKEEIEKQI---AQVTAKGE 610
           + + ++   Q L +  +  L                   R+  E+E+++     +  +  
Sbjct: 788 LDEAQEAECQVLKMQLQQELELLNAYQSKIKMQAEAQHDRELRELEQRVSLRRALLEQKI 847

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            E+   L +   E    + + +++E  IE F   S RL
Sbjct: 848 EEEMLALQNERTERIRSLLERQARE--IEAFDSESMRL 883


>gi|313215964|emb|CBY37364.1| unnamed protein product [Oikopleura dioica]
          Length = 1945

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 84/248 (33%), Gaps = 19/248 (7%)

Query: 407  HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
                 I  IK    +    + ++D  +   +          R  +   +    +     L
Sbjct: 845  EWMKIIFKIKPMISQAEEGKKMQDLEKNYEEVKTKLEKEKKRRIELEEQSVSFEQERNEL 904

Query: 467  MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
            +Q +  +  L      R   L+   I     ++E  ++L D    NNEL      L  + 
Sbjct: 905  LQKTEAQNALLDDAEGRCEELIAAKIEIDGKIREMQEKLEDEEEMNNELVAKKRKLEDES 964

Query: 527  VEQKYFLPEEIHQRLCE----------------RGFGELLKQLDRQVRDAGLWSATTEAN 570
             E K    +++   L +                     + + + +  ++        +  
Sbjct: 965  SELKK-DIDDLELTLAKIEKEKHATENKSKNVTEELATINESIHKLEKEKKALGEAHKQT 1023

Query: 571  IVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEAEKT-AILISILHEVHIQI 628
            + D++   ++ + L K    L +Q +++E  + A+  ++ + E+    L   +     QI
Sbjct: 1024 LADLQSEEEKVVNLSKSKGKLEQQVDDLEINLEAEKKSRMDLERAKRKLEGDIRLSQEQI 1083

Query: 629  HQIESQEA 636
              +E+ +A
Sbjct: 1084 MDLENDKA 1091


>gi|309363696|emb|CAP26018.2| hypothetical protein CBG_05563 [Caenorhabditis briggsae AF16]
          Length = 520

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 17/164 (10%)

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF--- 546
            LI HP +        AD +     L+ L S   +    +   + E + + L  RG    
Sbjct: 164 LLIAHPQLPSAIIVAAADHQMQEKWLKALRSA--TKISYKNTVVGETMIRELENRGVLLN 221

Query: 547 ---GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI- 602
                  ++L+ + R         +    D  +   +   L +  + L    + ++ ++ 
Sbjct: 222 EEKKSYEERLEAEARARKEEHDRADELAKDKEELEAEREKLIRTTKKLKDDLQNVKNELK 281

Query: 603 --AQVTAKGEAE------KTAILISILHEVHIQIHQIESQEAMI 638
              ++    E E      KT  L + +  ++I+  +I+ Q A I
Sbjct: 282 MTNEMKKTLEQEKMSLNSKTEHLQANMESLNIEKEKIQEQLAEI 325


>gi|296196923|ref|XP_002746052.1| PREDICTED: hypothetical protein LOC100385308 [Callithrix jacchus]
          Length = 1513

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 79/283 (27%), Gaps = 19/283 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
               I    K   + L   +    D       +       +        L+     +    
Sbjct: 1034 HQLISRLKKERSQILHDNAKLHRDQERCH--KRVCTLEREREVTKISRLEQENQVLGGDI 1091

Query: 420  --LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
              LR    Q +   +  L       +S      ++N + +   G  Q+ M  S+ K K +
Sbjct: 1092 SQLRKELDQYL-QVISDLEDCNGKSYSKILELEEENEKLKGNLGQLQKAMSESIRKSKGT 1150

Query: 478  KKPSLREAALLLTLIN-----HPAILQEQYQELADI--RYDNNELQKLWS-FLFSDFVEQ 529
             +    E   L  LI+     +  ++++    + D+   +       L    +       
Sbjct: 1151 VEQVALENWELRVLISELGVSYKELIKDVVLGIEDMIWAFRRENEHLLRRVHILE----- 1205

Query: 530  KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
            +    +    +    G      QLD       L +               +A  L+ R  
Sbjct: 1206 RDVTLQRSMDQEQCGGGTAATLQLDEVSVQRPLQALQDSEAEGTEEGHKLRAQQLHHRVL 1265

Query: 590  LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             L  Q  ++     + +          L + L E+  + H+ +
Sbjct: 1266 TLQCQLRDL-GATHRASRDEATRLQEELQAKLEELQRKKHEAQ 1307


>gi|293348214|ref|XP_001065209.2| PREDICTED: RIKEN cDNA 0610010D24-like [Rattus norvegicus]
 gi|293360058|ref|XP_343097.4| PREDICTED: coiled-coil domain containing 88C [Rattus norvegicus]
          Length = 2012

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 31/286 (10%), Positives = 83/286 (29%), Gaps = 16/286 (5%)

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK-LRYYYSQ 426
             A +      +  ++       +         +      ++     +            
Sbjct: 545 MEALKADRARQIKDLEQEKGHLHQAVWSLRERPQVNSMKDVEKENRTLHQAVTEAGSKLS 604

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            +    +QL +          R           +  +++L +       +++K    E  
Sbjct: 605 QLESEKKQLHRDLEEAKEKGERAEVLEKELHRLEKENEQLTKKVTSLKTVTEKVEALEHE 664

Query: 487 LLLTLINHPAI------LQEQYQELADIRYDNN----ELQKLWSFLFS-DFVEQKYFLPE 535
                + +  +      LQ    +L  +  DN     E ++L   + +  F   K    E
Sbjct: 665 SQGLELENRTLRKSLDTLQNVSVQLEGLERDNKQLDQENRELRKMVEAMRFTSAKMAQME 724

Query: 536 EIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             +Q+L   +      ++ L    + +     + ++   +  Q      +   + + L R
Sbjct: 725 TENQQLEREKEELRRNVEMLKTLSKKSERLEHSYQSVSAENLQLQHSLESSNHKSQALQR 784

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +  E+E +   +  K + E   +    L         +E + A +E
Sbjct: 785 ELSELEAERQAL--KRDLETLQLANKQLEGAEKDRKALEQEVAQLE 828


>gi|240280731|gb|EER44235.1| calmodulin-binding coil-coil protein [Ajellomyces capsulatus H143]
 gi|325089012|gb|EGC42322.1| calmodulin-binding coil-coil protein [Ajellomyces capsulatus H88]
          Length = 1234

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 79/265 (29%), Gaps = 14/265 (5%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD--QKLRYYYSQAIRD 430
                 +  ++   + E +    +T + R +    L    + I+     +     Q   D
Sbjct: 555 AQAKTRISNLEEQMEAERDQYMNDTDELRMQHRAQLDQLRDQIESLKHDIEDQEGQHAAD 614

Query: 431 R-LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
           R   +  ++ +              +    K  +     S   +   +   + ++  L  
Sbjct: 615 RDRWESQKRNLELQKEKVEQQATGYKRTIDKLQNVETTLSGREENLQNILENEKQRHL-- 672

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                  +L  Q +EL      N+++        +   E      E    R  E    E 
Sbjct: 673 ---QDEELLNRQIKEL------NDDIASKRQAAETQRQELMSVKEELRVARREESNLREK 723

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           L+ L+  +           A   ++++     L    +     RQ    +   A +    
Sbjct: 724 LQTLEDDIVVLQATLEDERAFAGNLQKSGTSDLEKQLQAANKERQVTRDKLANANIEIHN 783

Query: 610 EAEKTAILISILHEVHIQIHQIESQ 634
               +A L +   E+  QI+QI+ Q
Sbjct: 784 LRMSSAELEAERDELQSQINQIQGQ 808


>gi|164691107|dbj|BAF98736.1| unnamed protein product [Homo sapiens]
          Length = 1217

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 36/346 (10%), Positives = 93/346 (26%), Gaps = 24/346 (6%)

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T     ++  L K     +   + +   L    K   +                    D 
Sbjct: 182 TEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDE 241

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            S  R        +L        D +   E + R   T     + E             +
Sbjct: 242 LSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQL-------SAE 294

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    Q  +  L+    +     +   R      R +  +   ++  + +  + K +  
Sbjct: 295 RQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSV 354

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK--LWSFL--FSDFVEQKYFLPE 535
               E  +               ++    ++ + E +   +   L      +  K     
Sbjct: 355 KEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIA 414

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            IH+ L +               +             D+ +   +   L +++  +  +K
Sbjct: 415 AIHKDLEDTE------------ANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKK 462

Query: 596 EEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMIEG 640
           +E++ +   +  +  AE +         E   Q+ +  + +A++ G
Sbjct: 463 DELQSERNYLWREENAEQQALAAKREDLEKKQQLLRAATGKAILNG 508


>gi|156537003|ref|XP_001608292.1| PREDICTED: similar to GA11009-PA [Nasonia vitripennis]
          Length = 396

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 69/206 (33%), Gaps = 7/206 (3%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-SQRLMQSSLVKGKLSKKPSLREAAL 487
            D +  L  K I        +  KN R          ++ Q    K   ++     E  L
Sbjct: 51  ADSITNLMPKVINALELLESFATKNERENTTVQELRTKISQLESDKIGKAEDRQRFEKEL 110

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
                      QE    L  +     E ++L + +     + +    +       +    
Sbjct: 111 EQI---EEHWRQESRDLLEMVTRLQEENRRLAAAVQETQSDSEESTKQTFTA--SQEVDI 165

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607
            +L++L   +        + +  +    +  +       +  ++ R+ +  ++Q AQ+ A
Sbjct: 166 AVLQRLRTMIDKQRDQIRSRDRELSQKNEEIENLNNQVDKLSVVGRELKRKQRQ-AQMQA 224

Query: 608 KGEAEKTAILISILHEVHIQIHQIES 633
           +G  E+ A  ++ L + + ++  + +
Sbjct: 225 RGLVEERADFLAQLQDQNRELINLRA 250


>gi|145346570|ref|XP_001417759.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577987|gb|ABO96052.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1163

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/288 (10%), Positives = 84/288 (29%), Gaps = 34/288 (11%)

Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-QKLRYYYSQAIRDRL 432
           +  ++     ++        +    ++       L        D      +Y   +  RL
Sbjct: 534 MDEDAKDESRVVGAFSKAQAAKTPKEKIEVFVKDLIESFKRAGDVPGSIAHYLSWLCKRL 593

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
             +          + R          +   +++  ++  +K +  +     E  +     
Sbjct: 594 YGVIVVVSPFILQFLRDASYENVVSARAQMAKKHEEAENIKRQNEELARRIEQEV----- 648

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552
                  E+ + L        E         ++  + +      + +    +   +L ++
Sbjct: 649 ----RADEERERLMSEAAKVREEAAKAEREAAEREQARQEEMARLTEA-EAQAKTQLEEE 703

Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS----------------RQKE 596
             R         A  +A +       ++     KR   L                 R++ 
Sbjct: 704 RKRATNILEQERAQAKARLAAEEARLKEEAERIKREAALKQAELERERQAERERLVREEA 763

Query: 597 EIEKQIAQVTAKGEA---EKTAILISILHEVHIQIHQ----IESQEAM 637
           E+++++A+  AK ++   ++   L   L E+  ++ +    I+  EA 
Sbjct: 764 ELKERLAEEEAKAKSHRFDEEEALKVRLAELEERMKERSDVIKRLEAA 811


>gi|119609266|gb|EAW88860.1| hypothetical protein MGC4266, isoform CRA_c [Homo sapiens]
          Length = 732

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 50/133 (37%), Gaps = 8/133 (6%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG------FGELLKQLDRQVRDAGLWSATT 567
           + + L   L +  V +     +++  +L +        F + L ++  Q+++A       
Sbjct: 159 QFRMLMDRLGAQKVLEDESDVKQLWLQLKKEEPHLLSNFEDFLTRIISQLQEAHEEKNEL 218

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
           E  +      Y + +     +  + +Q +  ++Q      +    ++  L   L     +
Sbjct: 219 ECALKRKIAAYDEEIQHL--YEEMEQQIKSEKEQFLLKDTERFQARSQELEQKLLCKEQE 276

Query: 628 IHQIESQEAMIEG 640
           + Q+  ++  +EG
Sbjct: 277 LEQLTQKQKRLEG 289


>gi|497653|gb|AAC46490.1| myosin heavy chain [Argopecten irradians]
 gi|1093399|prf||2103335A myosin:SUBUNIT=heavy chain
          Length = 1951

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 79/234 (33%), Gaps = 18/234 (7%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + I+ +++        +        +K  + +  K      +Q  + +         +E
Sbjct: 936  LEGIKKKMEADNANLKKDIGDLENTLQKAEQDKAHKDNQISTLQGEISQQDEHIGKLNKE 995

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCE 543
               L          ++    L       N L KL + L     E +     E+  +   E
Sbjct: 996  KKALE------EANKKTSDSLQAEEDKCNHLNKLKAKLEQALDELEDNLEREKKVRGDVE 1049

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-------LSRQKE 596
            +   ++ + L     +             +VR+   +  +L  +          L R+ +
Sbjct: 1050 KAKRKVEQDLKSTQENVEDLERVKRELEENVRRKEAEISSLNSKLEDEQNLVSQLQRKIK 1109

Query: 597  EIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQEAMIEGFGKMSGRL 648
            E++ +I ++  + EAE+ A         E++ ++ ++   E + E  G  S ++
Sbjct: 1110 ELQARIEELEEELEAERNARAKVEKQRAELNRELEEL--GERLDEAGGATSAQI 1161



 Score = 37.2 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 40/299 (13%)

Query: 376  VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
               +      ++ E  NR+    D++ +L   L       +    +    +  + RLQQ 
Sbjct: 1365 NNEIQQWRSKFESEGANRTEELEDQKRKLLGKLSEAEQTTEAANAKCSALEKAKSRLQQE 1424

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-AALLLTLINH 494
             +    E         +  + +     +    Q+ +   +   + S +E       L   
Sbjct: 1425 LEDMSIEVDRANASVNQMEKKQRAFDKTTAEWQAKVNSLQSELENSQKESRGYSAELYRI 1484

Query: 495  PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-------------YFLPEEIHQRL 541
             A ++E    +  +R +N  L      L     E                   EE+   L
Sbjct: 1485 KASIEEYQDSIGALRRENKNLADEIHDLTDQLSEGGRSTHELDKARRRLEMEKEELQAAL 1544

Query: 542  CERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR------------ 587
             E      +   ++ R   +        +  I +  + +      ++R            
Sbjct: 1545 EEAEGALEQEEAKVMRAQLEIATVRNEIDKRIQEKEEEFDNTRRNHQRALESMQASLEAE 1604

Query: 588  ----------FRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHEVHIQIHQIESQ 634
                       + L +   E+E  +           +        + E+   I + + Q
Sbjct: 1605 AKGKADAMRIKKKLEQDINELEVALDASNRGKAEMEKTVKRYQQQIREMQTSIEEEQRQ 1663


>gi|127773|sp|P24733|MYS_AEQIR RecName: Full=Myosin heavy chain, striated muscle
 gi|5612|emb|CAA39247.1| myosin heavy chain [Argopecten irradians]
          Length = 1938

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 79/234 (33%), Gaps = 18/234 (7%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             + I+ +++        +        +K  + +  K      +Q  + +         +E
Sbjct: 933  LEGIKKKMEADNANLKKDIGDLENTLQKAEQDKAHKDNQISTLQGEISQQDEHIGKLNKE 992

Query: 485  AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCE 543
               L          ++    L       N L KL + L     E +     E+  +   E
Sbjct: 993  KKALE------EANKKTSDSLQAEEDKCNHLNKLKAKLEQALDELEDNLEREKKVRGDVE 1046

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-------LSRQKE 596
            +   ++ + L     +             +VR+   +  +L  +          L R+ +
Sbjct: 1047 KAKRKVEQDLKSTQENVEDLERVKRELEENVRRKEAEISSLNSKLEDEQNLVSQLQRKIK 1106

Query: 597  EIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQEAMIEGFGKMSGRL 648
            E++ +I ++  + EAE+ A         E++ ++ ++   E + E  G  S ++
Sbjct: 1107 ELQARIEELEEELEAERNARAKVEKQRAELNRELEEL--GERLDEAGGATSAQI 1158



 Score = 37.2 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 40/299 (13%)

Query: 376  VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
               +      ++ E  NR+    D++ +L   L       +    +    +  + RLQQ 
Sbjct: 1362 NNEIQQWRSKFESEGANRTEELEDQKRKLLGKLSEAEQTTEAANAKCSALEKAKSRLQQE 1421

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-AALLLTLINH 494
             +    E         +  + +     +    Q+ +   +   + S +E       L   
Sbjct: 1422 LEDMSIEVDRANASVNQMEKKQRAFDKTTAEWQAKVNSLQSELENSQKESRGYSAELYRI 1481

Query: 495  PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-------------YFLPEEIHQRL 541
             A ++E    +  +R +N  L      L     E                   EE+   L
Sbjct: 1482 KASIEEYQDSIGALRRENKNLADEIHDLTDQLSEGGRSTHELDKARRRLEMEKEELQAAL 1541

Query: 542  CERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR------------ 587
             E      +   ++ R   +        +  I +  + +      ++R            
Sbjct: 1542 EEAEGALEQEEAKVMRAQLEIATVRNEIDKRIQEKEEEFDNTRRNHQRALESMQASLEAE 1601

Query: 588  ----------FRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHEVHIQIHQIESQ 634
                       + L +   E+E  +           +        + E+   I + + Q
Sbjct: 1602 AKGKADAMRIKKKLEQDINELEVALDASNRGKAEMEKTVKRYQQQIREMQTSIEEEQRQ 1660


>gi|313221236|emb|CBY43690.1| unnamed protein product [Oikopleura dioica]
          Length = 709

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 12/291 (4%)

Query: 322 DGDDPGLRAAYKAIDLVL---CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES 378
           D D   +  A K                         G+  ++          ++  + S
Sbjct: 332 DEDFVKMFRAQKEAKKKPETKYDRSQEQAPYQPKFPAGKTWEAQAPKEPPAPAKQTAMSS 391

Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438
               +   K++   +     +++       + C  +   +     + + + +  +  F+ 
Sbjct: 392 AQPSNEEIKKKFREQLKAKREQKEAASKPPQPCTTYTPSKSHEDIFREEMMNAQKNAFKS 451

Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498
             +         + +     +  P+ R   +S    +           L  TLI  P+  
Sbjct: 452 KRSAPQKRPASPENDEHTSSRNRPAPRKRPASPQDKRAQN------EKLFDTLIYEPSSS 505

Query: 499 QE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
           ++    +       + + +     L    +++K     E  ++L E        +L  + 
Sbjct: 506 KKPSAHKNKSSNGIDPKFEAELQRLKEKRLKEKE--DHERAEKLAEEQKKARNARLFEEE 563

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
                 S  T  +  +VR  + + L   K  +   R+ +E   +IA +  +
Sbjct: 564 LRKSDDSPKTSKDRNNVRADFVEELERLKAHKRREREIKEKAARIAAMVQE 614


>gi|303251552|ref|ZP_07337726.1| cell division protein MukB [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307252135|ref|ZP_07534034.1| Chromosome partition protein mukB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649550|gb|EFL79732.1| cell division protein MukB [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306860435|gb|EFM92449.1| Chromosome partition protein mukB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 1496

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 77/236 (32%), Gaps = 10/236 (4%)

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +N ++ Q+    Y   + +  ++L ++ I       +     AR  D     + L    
Sbjct: 367 VMNALRHQEKIERYQDEVAELNEKLEEQQIALEEVSEQVETAQARADDADDQVEELRSQM 426

Query: 471 LVKGKLSKKPSLRE---AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
               +       R       +  L     +    + +L ++   + E       L     
Sbjct: 427 ADYQQALDAQQTRALQYQQAIAALEKAKQLCGLPHLDLHNVEDYHAEFAAQADDLTDQVF 486

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALY 585
           E +  L      +       EL+ ++  ++  +  W           D +    QA+AL 
Sbjct: 487 ELEQRLSVSDMAKTQFEKAYELVCKISGEIDRSEAWDEARSLLTAFTDQKMQATQAVALR 546

Query: 586 KRFRLLSRQK---EEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEA 636
           ++   L ++    +  E+ +A+   K +   E    L     +   ++  +E++ A
Sbjct: 547 QKLADLEQRLHQQQNAERLLAEFNQKAQTQFETAEELEGYFEQQQARLEDVEAELA 602


>gi|281351410|gb|EFB26994.1| hypothetical protein PANDA_010114 [Ailuropoda melanoleuca]
          Length = 1933

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 86/271 (31%), Gaps = 22/271 (8%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
              +  I   +   D   ++   N        ++ L+  +++    I+           I+
Sbjct: 1568 QVKSEIDRKIAEKDEEIEQLKRNYQRTVETMQSALDAEVRSRNEAIR-----------IK 1616

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             +++    +   + S   R   +  +H        +  Q  L    L  +  L+E   L 
Sbjct: 1617 KKMEGDLNEIEIQLSHANRQAAETVKHLRSVQGQLKDTQLHLDDA-LRGQEDLKEQ--LA 1673

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +     +LQ + +EL          +KL    L       +    +       ++    
Sbjct: 1674 MVERRANLLQAEVEELRASLEQTERARKLAEQELLDANERVQLLHTQNTSLIHTKKKLET 1733

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQ 604
             L QL  +V DA   +   E                 K+ +     L R K+ +E+ +  
Sbjct: 1734 DLTQLQSEVEDASRDARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKD 1793

Query: 605  VTAKGEAEKTAIL---ISILHEVHIQIHQIE 632
            +  + +  +   L      + ++  +I ++E
Sbjct: 1794 LQHRLDEAEQLALKGGKKQIQKLETRIRELE 1824


>gi|255732712|ref|XP_002551279.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240131020|gb|EER30581.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 365

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 77/206 (37%), Gaps = 18/206 (8%)

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
           L     +  S       ++ ++      ++ + +S  +  K   + +  + +L       
Sbjct: 82  LPNNRFSTRSPLTPINNRSYQNARVSMINENVAKSEDMSLKYEAEIAELQRSL------- 134

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
               +E+ + L +      E +     L +   E      +    R+ E     +L+Q  
Sbjct: 135 ----REKEKRLDNFASQREEWRAAMDELVAVQQEG----IQTFEDRIQELEQENMLQQ-- 184

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            Q++ +       +  I D+ Q  +  L+       +   ++E+++   ++  + + +  
Sbjct: 185 EQIKKSHESLQAADHKIKDLEQNIEGFLSDKVNGVEIGDHQKELDRLKHELAVRPQLKDL 244

Query: 615 AILISILHEVH-IQIHQIESQEAMIE 639
             L + L E+  I   +++ +EA+I+
Sbjct: 245 EELQTSLDELETIYQQKLDEKEAVIK 270


>gi|198474144|ref|XP_001356571.2| GA18616 [Drosophila pseudoobscura pseudoobscura]
 gi|198138268|gb|EAL33635.2| GA18616 [Drosophila pseudoobscura pseudoobscura]
          Length = 524

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 37/316 (11%), Positives = 85/316 (26%), Gaps = 23/316 (7%)

Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384
               +A      +             V     +D  +     G  A   +    +     
Sbjct: 137 MINYQARKSVSQMDFKEARRSGNYQLVAHVPCKDEQTVGAVAGLDA--NMSKMLMQDASQ 194

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
           ++    + R         +  +      N I     R         + +   +    +  
Sbjct: 195 MYDASIKGRMSFIVSPDQDARLASLKIFNTIMLHAWR---------KRRAEVRHITEQLE 245

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
              +   K               Q   V      + S REAA++        +  ++  +
Sbjct: 246 DQKKMLLKTRNQLHVYTSLFSEEQCLNVTLNEQLRLSYREAAVIKLSYEELNLKLKKIND 305

Query: 505 LADIRYDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
               R  +  +L+ L   + +    Q+    E       +    + + QL R  +++   
Sbjct: 306 -EKQRLADEIKLRDL--EIKNLHEMQQSLNSELFRANADQEEHLKQIAQLQRDYQESLGI 362

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623
                  +       + ++ + K  R         E +I +       EK   L+    +
Sbjct: 363 QQEQYIKLELFENELEASMKIIKEIRN--------EMEITEKIKLSSEEKYNKLLDHTKQ 414

Query: 624 VHIQIHQIESQEAMIE 639
           V     Q+E Q A+++
Sbjct: 415 VERTAQQMEEQVALLQ 430


>gi|165975995|ref|YP_001651588.1| cell division protein MukB [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|254764035|sp|B0BUD9|MUKB_ACTPJ RecName: Full=Chromosome partition protein mukB; AltName:
           Full=Structural maintenance of chromosome-related
           protein
 gi|165876096|gb|ABY69144.1| cell division protein [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 1496

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 77/236 (32%), Gaps = 10/236 (4%)

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +N ++ Q+    Y   + +  ++L ++ I       +     AR  D     + L    
Sbjct: 367 VMNALRHQEKIERYQDEVAELNEKLEEQQIALEEVSEQVETAQARADDADDQVEELRSQM 426

Query: 471 LVKGKLSKKPSLRE---AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
               +       R       +  L     +    + +L ++   + E       L     
Sbjct: 427 ADYQQALDAQQTRALQYQQAIAALEKAKQLCGLPHLDLHNVEDYHAEFAAQADDLTDQVF 486

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALY 585
           E +  L      +       EL+ ++  ++  +  W           D +    QA+AL 
Sbjct: 487 ELEQRLSVSDMAKTQFEKAYELVCKISGEIDRSEAWDEARSLLTAFTDQKMQATQAVALR 546

Query: 586 KRFRLLSRQK---EEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEA 636
           ++   L ++    +  E+ +A+   K +   E    L     +   ++  +E++ A
Sbjct: 547 QKLADLEQRLHQQQNAERLLAEFNQKAQTQFETAEELEGYFEQQQARLEDVEAELA 602


>gi|158290158|ref|XP_311738.4| AGAP003449-PA [Anopheles gambiae str. PEST]
 gi|157018321|gb|EAA07351.4| AGAP003449-PA [Anopheles gambiae str. PEST]
          Length = 2026

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 515  LQKLWSFL--FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
             ++L   +    +   Q+    E+   ++      E    L++           TE N+ 
Sbjct: 1181 NKELRDHVKRVEEQRRQQARTIEDALAKISS--LEETRNGLEQDKVRLQTILKETETNVT 1238

Query: 573  DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             + Q    A    ++F+  + QK+  EK++ Q     E E+   +++ LH++  Q+  +E
Sbjct: 1239 KLNQELSNAQTDIQKFQTDTTQKDASEKEL-QARLANEGEEKERVLAELHQIKKQMADLE 1297

Query: 633  SQ 634
              
Sbjct: 1298 GT 1299


>gi|126459205|ref|YP_001055483.1| hypothetical protein Pcal_0590 [Pyrobaculum calidifontis JCM 11548]
 gi|126248926|gb|ABO08017.1| conserved hypothetical protein [Pyrobaculum calidifontis JCM 11548]
          Length = 329

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/217 (9%), Positives = 68/217 (31%), Gaps = 10/217 (4%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +      IR +L ++      +     +  +      ++K      ++S   +   +   
Sbjct: 35  KRALLDEIRKQLAEVRSLIEGKREQLQKTRELIGSLVERKSQIINQIRSLRAELLQTNIN 94

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE---EI 537
             +       L+ +  +L    + +     +  +L++L   L     E     PE   + 
Sbjct: 95  LQKYRE---KLVVYRNLLSTLNEYVGGKVPEKEKLKRLIEQL-EYLFETSPTNPEWERQF 150

Query: 538 HQRLCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            + + +      ++  +++         +  +A          +   L +    + ++  
Sbjct: 151 IKYISQIERELNVVDSMEKVRAHIAELKSQADALKNRREAIRNEIAKLVQDLSTIKQEIA 210

Query: 597 EIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQI 631
           +++    ++        EK   L     E+  +I Q+
Sbjct: 211 QLKASRQEIYKELASLKEKREELKKRREEIKQEILQL 247


>gi|254244905|ref|ZP_04938227.1| exonuclease [Pseudomonas aeruginosa 2192]
 gi|126198283|gb|EAZ62346.1| exonuclease [Pseudomonas aeruginosa 2192]
          Length = 782

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 80/293 (27%), Gaps = 15/293 (5%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK-NCINHIKDQ 418
           D   + +              +     ++    +      E  +             + +
Sbjct: 348 DEHWQHWQTDPLRTFQALGESIEQRRQQQARLQQIEQHLQELKQRCDETSWQLKQSDEQR 407

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                  +  +  L +L  +       +                +Q  +++        +
Sbjct: 408 NEARQAEERAQAELAELNGRLGAHLGQHACAQDWQLSLEHAAQAAQSAVETLQAPLDSLR 467

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADI-----RYDNNELQKLWSFLFSDFVEQKYFL 533
           +  LR A  L  L       Q+++Q L           +N        L     EQ    
Sbjct: 468 EEQLRLAEALEHLQQQRQRQQDEFQRLQADWQAWRERQDNLDDSRLDALLGLSEEQATQW 527

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            E++ QRL E    +   + +RQ +         E +   +    +Q     +R     +
Sbjct: 528 REQL-QRLQEEITRQQTLEAERQAQLLQHRRQRPETDREALEDNLRQQ---RERLAASEQ 583

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
              +   Q+     +   E++  L++ L     +  +      +I   G  SG
Sbjct: 584 AYLDTYSQLQADNQR--REQSQALLAELERARAEFRRWGRLNELI---GSSSG 631


>gi|123456829|ref|XP_001316147.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121898845|gb|EAY03924.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2010

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 92/283 (32%), Gaps = 13/283 (4%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +        +         D L   E E       + +       +      +++     
Sbjct: 508 KEKDFDKLAQEKKLLKDENDRLINSEMEELDKYKKENQDLNNELQRIKNERQENENKENN 567

Query: 424 YSQ---AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
             Q    + + LQ+  Q  I +     +   +  + R +    +   Q+ +   +  +K 
Sbjct: 568 LKQGNEQLNEELQRTKQTVINKEEELKKVRDEADKLRKKIEELKEKQQNQINDNEELRKE 627

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  +  + +   IL++Q ++  +   + +++LQKL +         +    E I  
Sbjct: 628 IKSSEEKMKEIQSENEILKKQIEKEDENSSNISDDLQKLVNKSLVKESIDENNDVETI-- 685

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE--- 596
                   + ++ L ++  +    S   E     V    +      +    L + +    
Sbjct: 686 ----ENLKKEIEDLKKEKDNFDSISIENEDLRSQVEVLIKVEDERNQMSEELEKLRANYN 741

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           E++ QI++   +   E    LI    ++  ++  I+++   I+
Sbjct: 742 ELQSQISKQNFENNKETIEKLIGEKSKLQEELESIKNELDSIQ 784


>gi|114668373|ref|XP_001138763.1| PREDICTED: TAO kinase 1 isoform 2 [Pan troglodytes]
          Length = 1007

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 53/158 (33%), Gaps = 25/158 (15%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              + + L + L            + + +RL E    +L    ++         +T    
Sbjct: 739 QTRQYKALRNHLLE---TTPKSEHKAVLKRLKEEQTRKLAILAEQYDHSINEMLSTQALR 795

Query: 571 IVDVRQGYQQALALYKRFRLL-----------------SRQKEEIEKQI---AQVTAKGE 610
           + + ++   Q L +  +  L                   R+  E+E+++     +  +  
Sbjct: 796 LDEAQEAECQVLKMQLQQELELLNAYQSKIKMQAEAQHDRELRELEQRVSLRRALLEQKI 855

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            E+   L +   E    + + +++E  IE F   S RL
Sbjct: 856 EEEMLALQNERTERIRSLLERQARE--IEAFDSESMRL 891


>gi|205830436|ref|NP_001128629.1| myosin heavy chain IIa [Rattus norvegicus]
 gi|149052968|gb|EDM04785.1| rCG35174 [Rattus norvegicus]
          Length = 1942

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1568 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQSTLDAEIRSRNDAIRIKKKMEG 1627

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1628 DLNEM-EIQLNHANRMAAEALRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAM 1680

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1681 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1740

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1741 ISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1800

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1801 QLRLDEAEQLALKGGKKQIQKLEARVRELEGE 1832


>gi|7682767|gb|AAF67353.1|AF253405_1 PspA [Streptococcus pneumoniae]
          Length = 249

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANI 571
           EL+KL   L  +   Q     E     L ++       +  L++++ +  +      A+ 
Sbjct: 109 ELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQNKVADLEKEISNLEI--LLGGADP 166

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
            D     Q  LA   +   L + ++E++  + ++   G+ E+T
Sbjct: 167 EDDTAALQNKLA--TKKAELEKTQKELDAALNELGPDGDEEET 207



 Score = 37.9 bits (86), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 45/127 (35%), Gaps = 1/127 (0%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           +   L   L    VE K    E++   +          Q         L  A  +     
Sbjct: 25  DYATLKVALAKKEVEAKELEIEKLQYEISTLEQEVATAQHQVDNLKKLLAGADPDDGTEV 84

Query: 574 VRQGYQQ-ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +     +    L  +   L++++ E+EK +  +  +G+ +      +   E+  +  +++
Sbjct: 85  IEAKLNKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAELDKKADELQ 144

Query: 633 SQEAMIE 639
           ++ A +E
Sbjct: 145 NKVADLE 151


>gi|72020866|ref|XP_790657.1| PREDICTED: similar to Centrosomal protein Cep290, partial
           [Strongylocentrotus purpuratus]
          Length = 450

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 62/195 (31%), Gaps = 14/195 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
                  L         +        +   R      P +   + S    +L       E
Sbjct: 139 LDEKAQSLYHCQVDSRNKARHLRGTVQGLRRQFSGAVPLEEQEKFSKAMIQLRLDKERME 198

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--RLC 542
             +   ++ H    ++  ++ AD+   ++ LQ+L   L       K        Q  RL 
Sbjct: 199 KEM--KVLKHE--REKVSEQFADLELKHSGLQELMQTLKDSRGAAKVAEWHAKMQETRLQ 254

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDV--------RQGYQQALALYKRFRLLSRQ 594
           +      + +L +QV+       T E  ++ +        RQ  ++ L   +R   L R 
Sbjct: 255 DMKLNRQITRLQQQVKYFDNMVTTHEQTVMSLEQENVHINRQAEERQLLWEQREAELERM 314

Query: 595 KEEIEKQIAQVTAKG 609
            + +E+Q  ++    
Sbjct: 315 IDNLERQQREIADAA 329


>gi|28571201|ref|NP_788907.1| golgi microtubule-associated protein, isoform A [Drosophila
           melanogaster]
 gi|15292553|gb|AAK93545.1| SD07366p [Drosophila melanogaster]
 gi|22832269|gb|AAF48466.2| golgi microtubule-associated protein, isoform A [Drosophila
           melanogaster]
          Length = 1398

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 91/282 (32%), Gaps = 10/282 (3%)

Query: 361 SFIRCYGKTAFEKLIVESLPLV--DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
             +R   +   E  +  S P    +  W    +        E+  +++  +  ++  + +
Sbjct: 499 DKLRALLQAEIEDRLDSSFPQQKLERAWNALKDRWHRLDLVEQRLVDVQNQQLVSEHEKK 558

Query: 419 KLRYYYSQAIR--DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
            L    SQ I   D L +     + E   Y R   +      ++   Q   Q    + KL
Sbjct: 559 TLEADISQYILQCDELMKNNDLLLNELDKYKRNKLETIEEHHEETIVQLEAQLEEARQKL 618

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL------FSDFVEQK 530
                  +  +   LI+ P       + LA +     E  +L   L           +  
Sbjct: 619 ELASLSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLL 678

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590
               E++ ++  +    +   +   Q+R+           + +     +Q L        
Sbjct: 679 ERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMK 738

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           +S+ + +++    Q   + + EK   L+ +  ++  Q   +E
Sbjct: 739 ISQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELME 780


>gi|116514140|ref|YP_813046.1| chromosome segregation ATPase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093455|gb|ABJ58608.1| Predicted Chromosome segregation ATPase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 1250

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 12/208 (5%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              ++ RL  L  K  +    + +         D+   +Q    ++L +    K+   +E
Sbjct: 659 INQVKQRLADLADKLASYQELFKQADPATFPKSDKVTEAQIAYNNALAEQD--KRLKKQE 716

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
              +       A    Q ++       +   +          +    +  +++ + + E 
Sbjct: 717 KLQVQL-----ADFHRQKEQFTSELCPDLPAES--KEFADYRLAWDKYQDKQVQRIMQEN 769

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              +   +L           A        V+    +   +  +   L +Q EEI      
Sbjct: 770 DLLKQKDRLASAESRIKQARAELSEKTKQVQDKQDRLTEIKAQIATLEKQLEEIR---ND 826

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIE 632
              K +  +   L  +L E+  Q+++IE
Sbjct: 827 PETKKQLARKEELDQLLKELEKQLNEIE 854


>gi|332836571|ref|XP_003313108.1| PREDICTED: coiled-coil domain-containing protein 88B [Pan
            troglodytes]
          Length = 1476

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 23/220 (10%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
            +      ++ R  QL ++      G      K    +  +          L++ + S   
Sbjct: 934  KEEALMELKTRALQLEEELFQLRQGPAGLGPK----KRAEPQLVETQNVRLIEVERSNAM 989

Query: 481  SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             + E A L   + H         +L  ++      Q+L                E+    
Sbjct: 990  LVAEKAALQGQLQHLE------GQLGSLQ---GRAQELLLQSQRAQEHSSRLQAEKSVLE 1040

Query: 541  LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIE 599
            +  +     L+ L+ +VR A         +  + R   Q  L  ++    L R Q+ E+E
Sbjct: 1041 IQGQELHRKLEVLEEEVRAARQ-------SQEETRGQQQALLRDHEALAQLQRRQEAELE 1093

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
              + +            L     E+  +  Q+++Q A +E
Sbjct: 1094 GLLVRHRDL--KANMRALELAHRELQGRHEQLQAQRASVE 1131


>gi|332158870|ref|YP_004424149.1| hypothetical protein PNA2_1230 [Pyrococcus sp. NA2]
 gi|331034333|gb|AEC52145.1| hypothetical protein PNA2_1230 [Pyrococcus sp. NA2]
          Length = 611

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 7/132 (5%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            + + + + L    + +K    + +   L     GE + ++  Q R      +T +   V
Sbjct: 306 PKFEHIEARLKEFGLWKKRNEIKALV--LSGYSLGEAIMKIKSQERQREEEVSTEKKVEV 363

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA-EKTAILISILHEVH----IQ 627
           D++   ++   L K    L R+  E++  I +     E  E+                 +
Sbjct: 364 DIKPYLKRIEELEKEVAELERENAELKAIIEEQRKIIEKLERRLEEFDEKVRFKVLKERE 423

Query: 628 IHQIESQEAMIE 639
           I   + + AM+E
Sbjct: 424 IRARDERIAMLE 435


>gi|307175684|gb|EFN65572.1| EVI5-like protein [Camponotus floridanus]
          Length = 877

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 74/222 (33%), Gaps = 27/222 (12%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  + Y    ++++ +++ +             +      +    + RL++  + + +  
Sbjct: 437 KLEKDYTILKMKEQ-EEMVELRRLRADNRLLRQRTELLEAESAELADRLVRGQVSRAEEE 495

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           +   + +  L         +     +    +   + EL+ L   L  +   ++  L E +
Sbjct: 496 ETAFIAQRELAA-------LRHSHLETSHQLEQAHEELRSLSILLEENMTSRQSSLDEIL 548

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            ++       E+++ L  ++    L  A  +A I                 R L  + +E
Sbjct: 549 VKQEALSQKEEMIQCLQEELVRVRLHEAENDALI-----------------RELRGRIQE 591

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +E+    +         A L   L  V   + + E+  ++ +
Sbjct: 592 LEQDKKTLRESTPDNSVAHLQEELIAVK--LREAEANLSLKD 631


>gi|307245442|ref|ZP_07527530.1| Chromosome partition protein mukB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254396|ref|ZP_07536234.1| Chromosome partition protein mukB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258855|ref|ZP_07540587.1| Chromosome partition protein mukB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853783|gb|EFM86000.1| Chromosome partition protein mukB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862695|gb|EFM94651.1| Chromosome partition protein mukB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867206|gb|EFM99062.1| Chromosome partition protein mukB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 1496

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 77/236 (32%), Gaps = 10/236 (4%)

Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470
            +N ++ Q+    Y   + +  ++L ++ I       +     AR  D     + L    
Sbjct: 367 VMNALRHQEKIERYQDEVAELNEKLEEQQIALEEVSEQVETAQARADDADDQVEELRSQM 426

Query: 471 LVKGKLSKKPSLRE---AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527
               +       R       +  L     +    + +L ++   + E       L     
Sbjct: 427 ADYQQALDAQQTRALQYQQAIAALEKAKQLCGLPHLDLHNVEDYHAEFAAQADDLTDQVF 486

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALY 585
           E +  L      +       EL+ ++  ++  +  W           D +    QA+AL 
Sbjct: 487 ELEQRLSVSDMAKTQFEKAYELVCKISGEIDRSEAWDEARSLLTAFTDQKMQATQAVALR 546

Query: 586 KRFRLLSRQK---EEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEA 636
           ++   L ++    +  E+ +A+   K +   E    L     +   ++  +E++ A
Sbjct: 547 QKLADLEQRLHQQQNAERLLAEFNQKAQTQFETAEELEGYFEQQQARLEDVEAELA 602


>gi|300176464|emb|CBK23775.2| unnamed protein product [Blastocystis hominis]
          Length = 207

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 5/131 (3%)

Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568
              + +   L S            L ++ +  +       LL++   +           E
Sbjct: 61  ELADRDHDGLLSEYEFIIATHVTKLVQKRNIPIPSTLPPALLEENLGKEVIKIPPEKLKE 120

Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
              VD+         L  +     +   + EK I +     ++E++  L S L E+  Q+
Sbjct: 121 LQPVDMDDSKLSIEELRSKVEGTKKDLLDQEKAITE-----KSEESRQLTSELCELEKQL 175

Query: 629 HQIESQEAMIE 639
             +    AM E
Sbjct: 176 ADLNKLIAMQE 186


>gi|296418129|ref|XP_002838694.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634655|emb|CAZ82885.1| unnamed protein product [Tuber melanosporum]
          Length = 859

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 83/286 (29%), Gaps = 24/286 (8%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P S    Y K   EK+   +L  VD       + R         + +    N    I++ 
Sbjct: 266 PRSNSGKYWKERTEKIEGLALSKVDR-----LKTRCRIATGYAKQKDELCVNLSERIREF 320

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
             +    +    RL        +  +GY   +  ++ +      +       + +     
Sbjct: 321 AEKNRRLKIELKRLSASTSGAPSTATGYMNTFSSSSSYTSH---ALEQAMHIIREKDAEL 377

Query: 479 KPSLREAALLLTLIN-HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             S +E   +  +I  H   L+   + L           K+     S F        EE+
Sbjct: 378 AASNQERERMDGIIEGHREKLRAFEEMLDQRE------NKITELSMSMFNGDDDQDLEEV 431

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L ++     L+   ++     L +      +  + +GY        R +    + + 
Sbjct: 432 VANLRKKLKSAKLE--AKEYGLVRLEAKNLRERVDGLERGYVDVTTEKDRLQRELDRMKS 489

Query: 598 IE-------KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           IE        +I          +   L     ++  ++ +    EA
Sbjct: 490 IEVEGDKSMSRIRSSVENRLRAQVEGLEKARKDLRAELREKSLNEA 535


>gi|256395560|ref|YP_003117124.1| ATP-dependent chaperone ClpB [Catenulispora acidiphila DSM 44928]
 gi|256361786|gb|ACU75283.1| ATP-dependent chaperone ClpB [Catenulispora acidiphila DSM 44928]
          Length = 886

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 72/214 (33%), Gaps = 16/214 (7%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++K+I   +   R ++           +  +++    + ++     +++ AL+    ++H
Sbjct: 324 YRKHIESDAALERRFQTVLVDEPSVEDTVSILRGLRERLEVFHGVKIQDGALVAAASLSH 383

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +    +L + + S   E            + E           
Sbjct: 384 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDELTRRVTRLEIEEAALA------K 436

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG----- 609
            + R +          + D+R       A +   R   R+ +E+ +++ +  A+      
Sbjct: 437 EKDRASRDRLEELRRELADLRAQTSAKRAQWDAERQAIRRVQELREELERTRAEAERAER 496

Query: 610 --EAEKTAIL-ISILHEVHIQIHQIESQEAMIEG 640
             +  K A L    L E+  ++   E + +  +G
Sbjct: 497 EYDLNKAAELRYGKLTELERKLAAEEQRLSSKQG 530


>gi|195148420|ref|XP_002015172.1| GL18560 [Drosophila persimilis]
 gi|194107125|gb|EDW29168.1| GL18560 [Drosophila persimilis]
          Length = 1128

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 73/214 (34%), Gaps = 22/214 (10%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            +RD+  +L  +  +      R   +N +       +   + ++  +G    K  + E +
Sbjct: 514 QLRDKTDELTIEVESLTLELTRIKTRNKKQDQDSEAAAGGVAATKRRGDSPSKTHITEES 573

Query: 487 LLLTLINHPAILQEQY----------QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
                   P + +++            +L+D   ++ +   L S L       +      
Sbjct: 574 --------PRLGKQRKCTDGTGGTGGGDLSDNSNNSGDWLALNSELQRSKSHDEEL--AS 623

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
           + QR+      E L+                E ++  +++ Y++    ++      RQ  
Sbjct: 624 LKQRI--AELEEKLQAATATGAAPDSRCKELEGSLEQMQRAYEECEDYWQSKLGEERQMF 681

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
           E E+QI +   +   +K   L+  + E   Q  +
Sbjct: 682 EKERQIYEDEQQESDKKFTELMEKVREYEEQFSK 715


>gi|195034088|ref|XP_001988823.1| GH10367 [Drosophila grimshawi]
 gi|193904823|gb|EDW03690.1| GH10367 [Drosophila grimshawi]
          Length = 8390

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 41/336 (12%), Positives = 100/336 (29%), Gaps = 24/336 (7%)

Query: 320  CFDGDDPGLRAAYKAIDLVLCHLIPG-----------NRVNFVLLSRGEDPDSFIRCYGK 368
            C DGD   L+     I      L               +         +    ++     
Sbjct: 7113 CGDGDKAALQQILDEIAADYQTLKDESGKRGKSLDDLLQGRKAFEDSMKKMGDWLNEMET 7172

Query: 369  TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI------KDQKLRY 422
                +L   SLP+++       +       D    L   +      I       D+    
Sbjct: 7173 ANESELRTTSLPVLEEQLAHYKKLL--QNADNMGGLINDVSEQGKSILPTLSNADKLKLN 7230

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLSKKPS 481
               + ++DR  ++ Q      +  G + KK    +++     + + +   +  +L++   
Sbjct: 7231 DDIKNMKDRFGRIKQTIDDRVNTLGDHIKKYKDAKNRLADCSQFLGNIQQRLRELNRPIG 7290

Query: 482  LREAALLLTLINHPAILQEQYQ---ELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEI 537
             R   +   L  +  IL+E      ++ D++ D+  ELQ + +         +  L    
Sbjct: 7291 SRIEDVQDLLGAYEGILKELKDSKHKMGDMQMDDLPELQSILAQQDDMIKLIEDQLAHLR 7350

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
               L    F  L+ ++   +          E +   +     +   +  + +        
Sbjct: 7351 QLLLLREQFIALINEIIAFIMKYTDVIIDIENSPDSLEDKINKYDDVIVKIQECEGILAS 7410

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
               +  ++ ++G A     +   L  +  Q+  +  
Sbjct: 7411 ANDKGQKIASEGNAADKNSITEQLQSLKNQLQNLRK 7446


>gi|158261731|dbj|BAF83043.1| unnamed protein product [Homo sapiens]
          Length = 1011

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 88/227 (38%), Gaps = 17/227 (7%)

Query: 418 QKLRYYYSQAIRDRLQ-QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +     Y + I ++L+ ++ QK            K  A+ + +K  +             
Sbjct: 197 EIKLNEYKREIEEQLRAEMCQKLKFFKDTEIAKIKMEAKKKYEKELTMFQNDFEKACQAK 256

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           S+   LRE + L  +  H  I  E  +  A  +    ++  L      +   ++     E
Sbjct: 257 SEALVLREKSTLERIHKHQEI--ETKEIYAQRQLLLKDMDLLRG---REAELKQRVEAFE 311

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----QALALYKRFRLL 591
           ++Q+L E     + + L RQ ++   +  T +  + +    YQ       +    R    
Sbjct: 312 LNQKLQEEKHKSITEALRRQEQNIKSFEETYDRKLKNELLKYQLELKDDYIIRTNRLIED 371

Query: 592 SRQKEE----IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            R+ +E    +++++  + +K   E+    ++ + E+ +++  +++Q
Sbjct: 372 ERKNKEKAVHLQEELIAINSK--KEELNQSVNRVKELELELESVKAQ 416


>gi|145329965|ref|NP_001077968.1| TTN7 (TITAN7); ATP binding / protein binding [Arabidopsis thaliana]
 gi|145360381|ref|NP_180285.4| TTN7 (TITAN7); ATP binding / protein binding [Arabidopsis thaliana]
 gi|62319915|dbj|BAD93989.1| putative chromosome associated protein [Arabidopsis thaliana]
 gi|330252854|gb|AEC07948.1| structural maintenance of chromosome 3 (chondroitin sulfate
           proteoglycan 6) [Arabidopsis thaliana]
 gi|330252855|gb|AEC07949.1| structural maintenance of chromosome 3 (chondroitin sulfate
           proteoglycan 6) [Arabidopsis thaliana]
          Length = 1204

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 62/178 (34%), Gaps = 30/178 (16%)

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +  ++ +   + E+ +EL D+R    +LQ +   +     EQ+    +    +L     
Sbjct: 669 FMNIIMQNTKSINEKEKELEDVR---RQLQVIDQQITQLVTEQQRLEADWTLCKLQVEQL 725

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL--------------------ALYK 586
            + +   ++Q           E  + D+R    Q                         +
Sbjct: 726 KQEIANANKQKHAIHKAIEYKEKLLGDIRTRIDQVRSSMSMKEAEMGTELVDHLTPEERE 785

Query: 587 RFRLLSRQKEEIEK-----QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +   L+ + +++++     Q  ++  +    +    I+    +  +I ++++  A I+
Sbjct: 786 QLSKLNPEIKDLKEKKFAYQADRIERETRKAELEANIA--TNLKRRITELQATIASID 841


>gi|56206250|emb|CAI24986.1| myosin, heavy polypeptide 2, skeletal muscle, adult [Mus musculus]
          Length = 1912

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1538 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQSTLDAEIRSRNDAIRIKKKMEG 1597

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1598 DLNEM-EIQLNHSNRMAAEALRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAM 1650

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1651 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1710

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1711 ISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1770

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1771 QLRLDEAEQLALKGGKKQIQKLEARVRELEGE 1802


>gi|41584495|gb|AAS09910.1| SMC3 [Arabidopsis thaliana]
          Length = 1204

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 62/178 (34%), Gaps = 30/178 (16%)

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +  ++ +   + E+ +EL D+R    +LQ +   +     EQ+    +    +L     
Sbjct: 669 FMNIIMQNTKSINEKEKELEDVR---RQLQVIDQQITQLVTEQQRLEADWTLCKLQVEQL 725

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL--------------------ALYK 586
            + +   ++Q           E  + D+R    Q                         +
Sbjct: 726 KQEIANANKQKHAIHKAIEYKEKLLGDIRTRIDQVRSSMSMKEAEMGTELVDHLTPEERE 785

Query: 587 RFRLLSRQKEEIEK-----QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +   L+ + +++++     Q  ++  +    +    I+    +  +I ++++  A I+
Sbjct: 786 QLSKLNPEIKDLKEKKFAYQADRIERETRKAELEANIA--TNLKRRITELQATIASID 841


>gi|115494964|ref|NP_001069426.1| alpha-internexin [Bos taurus]
 gi|122132263|sp|Q08DH7|AINX_BOVIN RecName: Full=Alpha-internexin; Short=Alpha-Inx
 gi|115304927|gb|AAI23744.1| Internexin neuronal intermediate filament protein, alpha [Bos
           taurus]
 gi|296472698|gb|DAA14813.1| alpha-internexin [Bos taurus]
          Length = 499

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 29/316 (9%), Positives = 81/316 (25%), Gaps = 34/316 (10%)

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           G        S G D         +    +   +               +      +   L
Sbjct: 63  GLAYRRSPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRAL 122

Query: 405 EIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           E  L        +   +   + + +RD   QL +              ++    + +   
Sbjct: 123 EAELAALRQRHAEPSRVGELFQRELRDLRAQLEEASSARAQALLE---RDGLAEEVQRLR 179

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD----NNELQKLW 519
            R  + S  +    +    ++  +    +    + ++    L ++ +     + E+ +L 
Sbjct: 180 ARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL 239

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTE--------A 569
           + L +                L           + L  +   +      ++        A
Sbjct: 240 ATLQASSQAAAEVDVAVAKPDLSSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 299

Query: 570 NIVDVRQGYQQALALYKRF---------------RLLSRQKEEIEKQIAQVTAKGEAEKT 614
              +  +  ++ +  Y+R                  L RQ  E+E++          +  
Sbjct: 300 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEER-HSAEVASYQDNI 358

Query: 615 AILISILHEVHIQIHQ 630
             L + L     ++ +
Sbjct: 359 GQLENDLRNTKSEMAR 374


>gi|73981164|ref|XP_858387.1| PREDICTED: similar to phosphodiesterase 4D interacting protein
           isoform 1 isoform 5 [Canis familiaris]
          Length = 2409

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 39/330 (11%), Positives = 100/330 (30%), Gaps = 36/330 (10%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED----PDSFIRCYGKTA 370
            +I L  +        A +   LV         ++  L     D    P   +     T 
Sbjct: 157 NKIQLLQEESRLAKNEAARMAALVEAEKECNLELSEKLKGVANDREEVPMDQVNPDQYTE 216

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
                 + +  +      + +     + +++  L +  +     I+         Q   D
Sbjct: 217 ALAQRDKRIEELHQSLASQEKLVEQLSQEKQQLLHLLEEPMSMEIQ-PVTEELLKQQKLD 275

Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             + +  +     S      +K  +        Q  +     + K +++ S ++   + +
Sbjct: 276 SDETIITQQSVSDSHLAELQEKIQQMEATNKILQEKLNEMSCELKSAQESSQKQDGTIQS 335

Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550
           L           + L       NE ++L+  +     E +     ++ + L +   G+L 
Sbjct: 336 L----------KETLKSRE---NETEELYQVI-----EGQNDTMAKLREMLHQSQLGQLH 377

Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGY----QQALALYKRFRLLSRQKEEIEK--QIAQ 604
                     G   A  +  ++D++ G      +   L +  R   RQ  + ++  Q  +
Sbjct: 378 SS-------QGTSPAQQQMALLDLQSGLFYSQLEIQKLQRLVRQKERQLADAKRCVQFVE 430

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             A    ++         E+   + Q++ +
Sbjct: 431 AAAHEREQQKEASWKHNQELRKALQQLQGE 460



 Score = 37.9 bits (86), Expect = 4.8,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 90/276 (32%), Gaps = 16/276 (5%)

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
               ++  ++L   +       +             E   +      +D   R      +
Sbjct: 45  EKPPQVQTQALRDFEKHLNDLKKENFSLKLRIYFLEERMQQKYEASREDIYKRNI---EL 101

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           +  ++ L ++   +     + W              R  Q    + +      L E  + 
Sbjct: 102 KVEVESLKRELQDKKQHLDKTWADVENLNSHNEAELR-RQFEERQQETEHVYELLENKI- 159

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             L     + + +   +A +     E     S         +  +P     ++    + E
Sbjct: 160 QLLQEESRLAKNEAARMAALVEAEKECNLELSEKLKGVANDREEVP---MDQVNPDQYTE 216

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L Q D+++ +     A+ E  +  + Q  QQ L L      +S + + + +++ +   K
Sbjct: 217 ALAQRDKRIEELHQSLASQEKLVEQLSQEKQQLLHLL--EEPMSMEIQPVTEELLK-QQK 273

Query: 609 GEAEKTAILIS-----ILHEVHIQIHQIESQEAMIE 639
            ++++T I         L E+  +I Q+E+   +++
Sbjct: 274 LDSDETIITQQSVSDSHLAELQEKIQQMEATNKILQ 309


>gi|238791217|ref|ZP_04634856.1| Poly(A) polymerase [Yersinia intermedia ATCC 29909]
 gi|238729350|gb|EEQ20865.1| Poly(A) polymerase [Yersinia intermedia ATCC 29909]
          Length = 474

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 89/310 (28%), Gaps = 31/310 (10%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD----SFIRCYGKTAFEKLIVE 377
           D D        +   L     + G R     +  G  P+    +  R + +    +   +
Sbjct: 85  DFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFG--PEIIEVATFRGHHEQQPAEDSDK 142

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY------YSQAIRDR 431
           +            +N      D+    +  + +    I D  LR Y        + I   
Sbjct: 143 NSSQQAQNGMLLRDNIFGTIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRL 202

Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
           +     +Y  +     R  +  A+      P        L        P+      L  L
Sbjct: 203 IGDPETRYREDPVRMLRAVRFAAKLDMTISPETAEPIPRLASLLHEIPPARLFEESLKLL 262

Query: 492 -----------INHPAILQEQYQELADI--RYDNNELQKLWSFLFS----DFVEQKYFLP 534
                      +    + Q  +  +A       ++ ++++   +           +   P
Sbjct: 263 QSGYGYKTYLKLCEYQLFQPLFPLIARNFTELHDSPMERILVQVLKNTDHRLHNDQRVNP 322

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
             +   +      E  ++L ++   A   +      + DV     ++LA+ KR   L R 
Sbjct: 323 AFLFAAMLWYPLIEHAQKLTQESGLAYYDAFA--LAMNDVLDEECRSLAVPKRITSLVRD 380

Query: 595 KEEIEKQIAQ 604
              ++ ++++
Sbjct: 381 IWLLQLRLSR 390


>gi|330807033|ref|YP_004351495.1| peptidase [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
 gi|327375141|gb|AEA66491.1| Putative peptidase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 430

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 64/196 (32%), Gaps = 10/196 (5%)

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN--HPAI 497
           + +         +      +K  S R  Q  L+  +            L  L+N  +P  
Sbjct: 74  LQKELKKSESELQRLDGEKKKLQSARTEQQKLIAIQARAAYQNGRQEYLKLLLNQQNPEK 133

Query: 498 LQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
                  Y  L+  R    +L+     L      +K    ++    + +       ++L+
Sbjct: 134 FARTLTYYDYLSQARL--EQLKNFNETLRQLANVEKDIELQQAQLLVQKSSLDTQREELE 191

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
           +  ++  +  A       DV+    +  A  +    L+   + IE+ +A+   + E  + 
Sbjct: 192 KVRKERQVALAKLN---DDVKARDSKLKAREQDQAELANVLKTIEETLARQAREAEEARQ 248

Query: 615 AILISILHEVHIQIHQ 630
             LI+       ++ +
Sbjct: 249 KALIAQQEAEKKRLRE 264


>gi|327262733|ref|XP_003216178.1| PREDICTED: girdin-like isoform 1 [Anolis carolinensis]
          Length = 1880

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 69/226 (30%), Gaps = 17/226 (7%)

Query: 425  SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
             +     L+Q   +   +     +  K+  +  D    +       +V  +   +  ++E
Sbjct: 812  LEKENKLLEQETSQLEKDKKQLEKENKRLRQQADITDNTLEENNVKIVHLETENRSLIKE 871

Query: 485  AALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
              +   + I    I +E  + +     D   L  L   L +          E++  +   
Sbjct: 872  IGICKESSIRLKEIEKENKELVKRATIDKKTLVTLREDLVN----------EKLKTQQMN 921

Query: 544  RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
                +L  +L++   +        ++      +  +  L    +  L   + +E +    
Sbjct: 922  NDLEKLTHELEKIGLNKERLLHDEQSTDDSKYKLLESRLESTLKKSL---EIKEEKIAAL 978

Query: 604  QVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIEGFGKMSG 646
            +   +        L   L  V      + Q + +E M++     SG
Sbjct: 979  EARLEESTNLNQQLRQELKTVKKNYEALKQRQEEEKMVQNCSSRSG 1024


>gi|198421707|ref|XP_002129062.1| PREDICTED: similar to structural maintenance of chromosomes 1A
           [Ciona intestinalis]
          Length = 1225

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 109/328 (33%), Gaps = 17/328 (5%)

Query: 318 VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377
           V+     +  +      I +    +  G   +  + +  E    F    G   F++   +
Sbjct: 110 VVTHAEYNKEMEKINIFIKVKNFLVFQGQVESIAMKNPKERTQLFEEISGSGEFKEEYEK 169

Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ-AIRDRLQQLF 436
           +   +    ++ET+          AE +   +      K +KLR  YS   ++  L +LF
Sbjct: 170 AKSEMSKA-EQETQYSFHRKKGIAAERKEAKQEKDEADKYRKLRDDYSNLRLQLMLFKLF 228

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
                  +       KN   R      ++  +  + + K  +   +RE + L   I    
Sbjct: 229 YNEKEIEAIRAEADTKNKDIRHHIRKREK-YEEEIKRKKQEQGKMMRELSALERAIQEKE 287

Query: 497 I-----LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
                      +   +  +   +++     L     E ++     + + L ++   E+ +
Sbjct: 288 TELNRKRPMYIKAKENTNFVMKKVESAKKSL--RTAENRHESHMHVIEDLQKQ-LQEIEE 344

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALY----KRFRLLSRQKEEIEKQIAQVTA 607
           +         L S T   ++        +   L     KR   L+ + E+++++      
Sbjct: 345 RRKEFDGQVELESQTEGRDLELEESQITEYNRLKEEAAKRSTALNTEIEKLQREQQTDQE 404

Query: 608 KGEAEKTA--ILISILHEVHIQIHQIES 633
           K +AE+     L S   +   ++ + +S
Sbjct: 405 KLDAERRKKSELWSQQKQKKKELEESKS 432


>gi|194388614|dbj|BAG60275.1| unnamed protein product [Homo sapiens]
          Length = 659

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 101/278 (36%), Gaps = 11/278 (3%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +    +++   E + L D L  + T+  S    D +  +   +      + +  L   
Sbjct: 376 KAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELNKQVSE--LSQL 433

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
           Y +A  +      +K + + +    +  ++ +       S+   + +L + K      L 
Sbjct: 434 YKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSKVLN 493

Query: 484 EAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
           E   L  L+     +   + E  Q +  +R    E+++  S L       K     ++ +
Sbjct: 494 ELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLAS-KEVEVAKLEK 552

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597
           +L E         + R   +    S  +E ++    +++  ++   ++     +  +  +
Sbjct: 553 QLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQ 612

Query: 598 IEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++++    Q   K + ++   L+    +   ++ +++ 
Sbjct: 613 VKREKENIQTLLKSKEQEVNELLQKFQQAQEELAEMKR 650


>gi|195589854|ref|XP_002084664.1| GD12711 [Drosophila simulans]
 gi|194196673|gb|EDX10249.1| GD12711 [Drosophila simulans]
          Length = 1854

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 71/215 (33%), Gaps = 9/215 (4%)

Query: 421  RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ-RLMQSSLVKGKLSKK 479
            R    + ++  L    +  + EH  + +  ++  + + +       + +    + +L +K
Sbjct: 931  RESRIEELKQELAAAKRDVLKEHRQWEKAEQERMKCKSEIIEHLANVHRLEQQETELRQK 990

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                +       +     ++E  +E    R  N+    L   L         F   +   
Sbjct: 991  LRQIQTRFDGLTLEQKITIRELQEEREKSRKANDSCLVLQKELKQLTDN---FQRLKYAC 1047

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             + +    E+   L  +        +  +     +R+   Q   L K+   +     E E
Sbjct: 1048 SITDSQLTEVETMLKSEQDRNKSQKSQLDTLHEKLRERNDQLTDLRKQLTAV-----EAE 1102

Query: 600  KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            K++A+  A+  A +   L   L E   ++   + Q
Sbjct: 1103 KRLAEQRAQVLASEIEELRLNLKEQQKKLVAQQDQ 1137


>gi|300798022|ref|NP_001179049.1| CAP-Gly domain-containing linker protein 2 [Bos taurus]
 gi|297490477|ref|XP_002698229.1| PREDICTED: CAP-Gly domain-containing linker protein 2-like [Bos
           taurus]
 gi|296473061|gb|DAA15176.1| CAP-Gly domain-containing linker protein 2-like [Bos taurus]
          Length = 1047

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 80/282 (28%), Gaps = 16/282 (5%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +  I         +L    +  ++     E         +        +      ++ ++
Sbjct: 450 EESITKGDLETQTQLEHARIGELEQNLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEE 509

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
                 + I +  Q L                   R R      +R  +S L++ K  K 
Sbjct: 510 ELSLRREEIEELQQCLLHSGPPPADHPEAAETLRLRERLLSASKERQRESGLLRDKYEKA 569

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEE 536
               +A +      +    QE     A ++   +E   L                   E+
Sbjct: 570 LRAYQAEVDKLRAANEKYAQEVVDLKAKVQQATSENMGLMDNWKSKLDSLASDHQKSLED 629

Query: 537 IHQRLCERGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           +   L      +   + +L   +    +     E   +  +   + A+ + ++   L ++
Sbjct: 630 LKATLNSGPGAQQKEIGELKAVMEGIKMEHQL-ELGNLRAKHDIETAVHVKEKEG-LRQK 687

Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
            +E ++++A                   EV    H++E QEA
Sbjct: 688 LQEAQEELAA---------VQQHWCAQLEVQASQHRLELQEA 720


>gi|119571104|gb|EAW50719.1| GRIP1 associated protein 1, isoform CRA_e [Homo sapiens]
          Length = 672

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 33/313 (10%), Positives = 95/313 (30%), Gaps = 8/313 (2%)

Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387
                  ++L         R+ +  L   E          +    KL  +     +  + 
Sbjct: 109 APMPLAEVELKWEMEKEEKRLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQES-FC 167

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R    +     D R ++E   +      K Q  R    Q   +   Q   +   +  G  
Sbjct: 168 RLQTEKETLFNDSRNKIEELQQRKEADHKAQLARTQKLQQELEAANQSLAELRDQRQGER 227

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
                  R    +  + +  + ++++ + +   +  +         +  ++ ++    + 
Sbjct: 228 LEHAAALRALQDQIQTAKTQELNMLREQTTGLAAELQQQQ----AEYEDLMGQKDDLNSQ 283

Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567
           ++       +L   L     E++    E    R        +L +L  +           
Sbjct: 284 LQESLRANSRLLEQLQEIGQEKEQLTQELQEARKSAEKRKAMLDELAMETLQEKSQHKEE 343

Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
              +    +  ++ L +  R+    R+  E +K+  +   +G+  +       L  +   
Sbjct: 344 LGAVR--LRHEKEVLGVRARYERELRELHEDKKR-QEEELRGQIREEKARTRELETLQQT 400

Query: 628 IHQIESQEAMIEG 640
           + ++++Q   ++G
Sbjct: 401 VEELQAQVHSMDG 413


>gi|114636227|ref|XP_508290.2| PREDICTED: MICAL C-terminal like [Pan troglodytes]
          Length = 689

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 78/287 (27%), Gaps = 14/287 (4%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           P    +   +  F          + +      +++SF    + +     +++     K +
Sbjct: 371 PTLLKKVSLQENFPDASKPPKKRISLFSSLRLKDKSFENFLQESRQRKDIRDLFGSPKRK 430

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            L    +QA+   LQ      + + +         A   D K    R   +       S 
Sbjct: 431 VLPEDSAQALEKLLQPFKSTSLRQAAPPPPPPPPTAGGADSKNFPLRAQVTEASSSASST 490

Query: 479 KPSLREAAL---LLTLINHPAILQ--EQYQELADIRYDNNELQKLW--SFLFSDFVEQKY 531
             S  +      L   +     L+  ++ ++         EL++L+    +     E + 
Sbjct: 491 SSSSADEEFDPQLSLQLKEKKTLRRRKKLEKATKQLVKQEELKRLYKAQAIQRQLEEVEE 550

Query: 532 FLPE------EIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALAL 584
                      + + L          +         L     +            Q L L
Sbjct: 551 RQRASEIQGVRLEKALRGEADSGTQDEAQLLQEWFKLVLEKNKLMRYESELLIMAQELEL 610

Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
                 L ++  E   +      + +  +   + + L +V  Q  ++
Sbjct: 611 EDHQSRLEQKLREKMLKEESQKDEKDLNEEQEIFTELMQVIEQRDKL 657


>gi|73541577|ref|YP_296097.1| chromosome segregation protein SMC [Ralstonia eutropha JMP134]
 gi|72118990|gb|AAZ61253.1| Chromosome segregation protein SMC [Ralstonia eutropha JMP134]
          Length = 1171

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 84/260 (32%), Gaps = 9/260 (3%)

Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
            +E    + N   +  E    +++ +  +     +      +  R + L Q    E    
Sbjct: 173 YKERRRETENRLSDTRENLTRVEDILRELGANLEKLEGQAEVAQRFKTL-QADGEEKQHL 231

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
               +K     +Q+   + + Q+ +     + +    EA L    + H A     +    
Sbjct: 232 LWLLRKREAQIEQERHQRAIEQAQIDLEAQTAQLRHVEAELETMRVAHYAASDGMHAAQG 291

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-----GELLKQLDRQVRDAG 561
            +   N E+ KL + +    VE +  +  +I     +R        +   +L +   +  
Sbjct: 292 ALYEANAEVSKLEAEI-RYVVESRNRVQAQIAALTAQREQWQGKSEQASDELAQAEENLA 350

Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI--S 619
           +    T      V Q   +   L  ++R   +   E    I Q     + E         
Sbjct: 351 VSEGRTVEAQEAVAQKNDELPTLEAQWRDAQQLLNEQRAGIMQAEQALKLEAAQQRSADQ 410

Query: 620 ILHEVHIQIHQIESQEAMIE 639
           +L ++  +  ++  +E  ++
Sbjct: 411 MLQQLEQRRERLSGEEKGLD 430


>gi|268557418|ref|XP_002636698.1| C. briggsae CBR-MYO-3 protein [Caenorhabditis briggsae]
 gi|74788753|sp|Q60LV4|MYO3_CAEBR RecName: Full=Myosin-3; AltName: Full=Myosin heavy chain A; Short=MHC
            A
 gi|187021029|emb|CAP39610.1| CBR-MYO-3 protein [Caenorhabditis briggsae AF16]
          Length = 1969

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 82/264 (31%), Gaps = 5/264 (1%)

Query: 362  FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             IR        +    +    +   + E+  +         +   HL+   N ++ Q   
Sbjct: 987  QIRSLQDEMANQDESVAKLNKEKKHQEESNRKLNEDLQSEEDKVNHLEKIRNKLEQQMDE 1046

Query: 422  YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               +     R +   +K   +  G  +  ++N     ++                     
Sbjct: 1047 LEETIDREKRSRSDIEKSKRKVEGDLKVAQENIDEITKQKQDVENTLKRKEDDLHHASTK 1106

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
            L E   L   +     ++E    +A++  +    +            +     EEI +RL
Sbjct: 1107 LAEEQALAAKLQRQ--IKELQARIAELEEELESERNSRQK-ADRTRNELQRELEEISERL 1163

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
             ++G     +    + R+A +     E    D         +L KR      +  E  + 
Sbjct: 1164 EQQGGFSAAQLEANKKREAEIAKLRREKE-EDALNHETAVSSLRKRQVDAVAELTEQLET 1222

Query: 602  IAQVTAKGEAEKTAILISILHEVH 625
            + ++ AKG+AE+ A L   L E  
Sbjct: 1223 LQKLKAKGDAER-AKLQRDLEEAQ 1245



 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 87/257 (33%), Gaps = 23/257 (8%)

Query: 391  ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450
            E R+      +A LE  L +    ++D + R+      + + +Q                
Sbjct: 915  EERNEKLNQLKATLESKLTDITGQLEDMQERHEDLTRQKKKTEQELSDTKKHVQDLELTL 974

Query: 451  KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510
            +K  + +  +    R +Q  +     S     +E        +     ++  ++L     
Sbjct: 975  RKAEQEKQSRDHQIRSLQDEMANQDESVAKLNKEKK------HQEESNRKLNEDLQSEED 1028

Query: 511  DNNELQKLWSFL------FSDFVEQKYFLPEEIHQ--RLCERGFGELLKQLDRQVRDAGL 562
              N L+K+ + L        + ++++     +I +  R  E       + +D   +    
Sbjct: 1029 KVNHLEKIRNKLEQQMDELEETIDREKRSRSDIEKSKRKVEGDLKVAQENIDEITKQKQD 1088

Query: 563  WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--------- 613
               T +    D+     +          L RQ +E++ +IA++  + E+E+         
Sbjct: 1089 VENTLKRKEDDLHHASTKLAEEQALAAKLQRQIKELQARIAELEEELESERNSRQKADRT 1148

Query: 614  TAILISILHEVHIQIHQ 630
               L   L E+  ++ Q
Sbjct: 1149 RNELQRELEEISERLEQ 1165



 Score = 38.3 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 85/277 (30%), Gaps = 19/277 (6%)

Query: 364  RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
            +        +    +   ++       E ++        E          + K  +L+  
Sbjct: 868  KIQKLEEAVQRGEIARSQLETQVADLVEEKNALFLSLETEKANLADAEERNEKLNQLKAT 927

Query: 424  YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
                + D   QL            +  K      D K   Q L  +     +  +    +
Sbjct: 928  LESKLTDITGQLEDMQERHEDLTRQKKKTEQELSDTKKHVQDLELTLRKAEQEKQSRDHQ 987

Query: 484  EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
              +L   + N    + +  +E           +KL   L     E K    E+I  +L +
Sbjct: 988  IRSLQDEMANQDESVAKLNKEKKHQE---ESNRKLNEDL--QSEEDKVNHLEKIRNKLEQ 1042

Query: 544  R--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
            +     E + +  R   D        E ++   ++   +          +++QK+++E  
Sbjct: 1043 QMDELEETIDREKRSRSDIEKSKRKVEGDLKVAQENIDE----------ITKQKQDVENT 1092

Query: 602  IAQVTAKGEAE--KTAILISILHEVHIQIHQIESQEA 636
            + +          K A   ++  ++  QI +++++ A
Sbjct: 1093 LKRKEDDLHHASTKLAEEQALAAKLQRQIKELQARIA 1129



 Score = 37.2 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 82/280 (29%), Gaps = 13/280 (4%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                R   +   E++             +   N+       +   E       +      
Sbjct: 1145 ADRTRNELQRELEEISERLEQQGGFSAAQLEANKKREAEIAKLRREKEEDALNHETAVSS 1204

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            LR     A+ +  +QL      +  G     K      + +  +   +++     K  K 
Sbjct: 1205 LRKRQVDAVAELTEQLETLQKLKAKGDAERAKLQRDLEEAQHATDSEVRARQEVEKSYKT 1264

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
              ++ + L          LQ+       +  +N +L +    + +            +  
Sbjct: 1265 IEVQFSELQTKADEQSRQLQDFAALKNRLNNENGDLNRTLEEMDNQVNSLHRL-KSTLQS 1323

Query: 540  RLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            +L E  R F E  ++       A       E     + +  +           L+RQ  +
Sbjct: 1324 QLDETRRNFEEESRERQALAATAKNLEHENEILREHLDEEAES-------KADLTRQISK 1376

Query: 598  IEKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIESQ 634
            +  +I Q  A+ ++E   K   + +    + +++ ++   
Sbjct: 1377 LNAEIQQWKARFDSEGLNKLEEIEAAKKALQLKVQELSDT 1416


>gi|4503179|ref|NP_003602.1| oral-facial-digital syndrome 1 protein [Homo sapiens]
 gi|12643319|sp|O75665|OFD1_HUMAN RecName: Full=Oral-facial-digital syndrome 1 protein; AltName:
           Full=Protein 71-7A
 gi|3451166|emb|CAA75436.1| Cxorf5 (71-7A) protein [Homo sapiens]
 gi|119619241|gb|EAW98835.1| oral-facial-digital syndrome 1, isoform CRA_a [Homo sapiens]
 gi|317040142|gb|ADU87636.1| epididymis tissue sperm binding protein Li 5a [Homo sapiens]
          Length = 1012

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 88/227 (38%), Gaps = 17/227 (7%)

Query: 418 QKLRYYYSQAIRDRLQ-QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476
           +     Y + I ++L+ ++ QK            K  A+ + +K  +             
Sbjct: 197 EIKLNEYKREIEEQLRAEMCQKLKFFKDTEIAKIKMEAKKKYEKELTMFQNDFEKACQAK 256

Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536
           S+   LRE + L  +  H  I  E  +  A  +    ++  L      +   ++     E
Sbjct: 257 SEALVLREKSTLERIHKHQEI--ETKEIYAQRQLLLKDMDLLRG---REAELKQRVEAFE 311

Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----QALALYKRFRLL 591
           ++Q+L E     + + L RQ ++   +  T +  + +    YQ       +    R    
Sbjct: 312 LNQKLQEEKHKSITEALRRQEQNIKSFEETYDRKLKNELLKYQLELKDDYIIRTNRLIED 371

Query: 592 SRQKEE----IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            R+ +E    +++++  + +K   E+    ++ + E+ +++  +++Q
Sbjct: 372 ERKNKEKAVHLQEELIAINSK--KEELNQSVNRVKELELELESVKAQ 416


>gi|328698597|ref|XP_003240679.1| PREDICTED: hypothetical protein LOC100167295 [Acyrthosiphon pisum]
          Length = 4882

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 85/280 (30%), Gaps = 22/280 (7%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
               F+  + E    ++   K   E       +  +      +      +   +     Q
Sbjct: 500 ELEEFQGTMSEKRDQLEK-LKHLDEKVRCEKLEMDSLKSKAQEMLKTGHQSNAVAET--Q 556

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + ++  ++  K     +   + +K +  ++         +  S  K    K+  L +  
Sbjct: 557 EVFNKFDRISDKVKKLLNQREQQYKDHKTYKAAYEELSNFLNRSRDKIPSLKERPLSDKL 616

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            +   I  P  L+    + A      + L  +   + +   E    + ++    + +   
Sbjct: 617 AIENAIT-P--LETLLNKRAQGELLLDNLNTIGGIIITSTSENGEKIIKQEISSISDE-L 672

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            +L   +  Q  +                  +++    Y++     +Q +   K I    
Sbjct: 673 NKLFDDILTQKDNLHAIHT-----------HWREYKDEYEKLSDWLQQIDISMKAIKNTP 721

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
                EKT  +     ++   +  +E  ++ IE F + SG
Sbjct: 722 LATVLEKTDQV----KQIQDVLDNLEKGKSNIERFNESSG 757


>gi|326475369|gb|EGD99378.1| SMC protein [Trichophyton tonsurans CBS 112818]
          Length = 1260

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 79/275 (28%), Gaps = 30/275 (10%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
                    E      +N +KD+ +    +     R     +    + +G  +    +  
Sbjct: 690 PGQRNAKRWEDTEIANLNKLKDKLMADLANLPKAHRRGSEEESLQGQLTGLEQRLAYSRD 749

Query: 456 HRDQKGPSQRLMQSSLVKGKL---SKKPSLREAALLLTLINHPAILQEQYQEL--ADIRY 510
                  +     S L   K    S +P  RE + LL        L +  +E+  +    
Sbjct: 750 ELSALEKNLESKSSELDFAKRQIKSVQPKYREKSALL------ETLDQSIEEIQSSVTEV 803

Query: 511 DNNELQKL-----WSFLFSDFVEQKYFLPEEIHQRLC--------ERGFGELLKQLDRQV 557
           ++   +       +  +     +Q     E   ++L         E       ++L    
Sbjct: 804 EDKVYRDFCKRLGYKNIQEYDAQQGSLQEEAAEKKLQFTTQKTKIENQLSFEKQRLQATE 863

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617
                    ++ +   + +   +  ++ +R   L+ +   + + +         E +  L
Sbjct: 864 TRIESLKMQSQKDEAMIAELEAERGSIQERLDELNDELTSLNETLQNQQNLFS-ESSENL 922

Query: 618 ISILHEVHIQIHQIESQEAMIEGFGK-----MSGR 647
                E+  +   +E+    I G         SGR
Sbjct: 923 AQQRRELQRRSKNVEATLKTISGLEADVQRHSSGR 957


>gi|301620088|ref|XP_002939415.1| PREDICTED: GRIP and coiled-coil domain-containing protein 1
           [Xenopus (Silurana) tropicalis]
          Length = 704

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 81/261 (31%), Gaps = 23/261 (8%)

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436
           +    ++  ++ +  N      +               I+           I+++L +  
Sbjct: 164 QEKSRMEASYQADKRNAKQEMEELMLSFVQERTKLQEEIQS----------IQEQLAETK 213

Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496
            + I++     +    +     +     +  +    + +L  + + +E A  L  I+   
Sbjct: 214 ARLISQQHDRAQEQTDHVIMLKELQRLLQGERDHRQEAELRLEEARQELAGKLAGISELE 273

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
              E  +E    R    +L++L   +     +     P         +     L ++  +
Sbjct: 274 GRSEVAEE--QNRKLRKDLEELRKEIMEARRQGAEPDPAV-------KKLQAELDRVKEE 324

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           +    L     +  + + ++  Q+ L   +R   L  Q  E+ + +         ++   
Sbjct: 325 M--HALLQEERKKKLDEEQETMQRFLQEEQRICSLESQVSEMSELLGAAETS--KQRDQA 380

Query: 617 LISILHEVHIQIHQIESQEAM 637
            I  L E  IQ+       A+
Sbjct: 381 TIRKLRERLIQLEAENKTLAL 401


>gi|301020883|ref|ZP_07184942.1| conserved hypothetical protein [Escherichia coli MS 69-1]
 gi|300398408|gb|EFJ81946.1| conserved hypothetical protein [Escherichia coli MS 69-1]
          Length = 802

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 79/234 (33%), Gaps = 25/234 (10%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y  A  +    L   Y+   S  G+Y   N+R         +    +++   +    
Sbjct: 524 KEKYKNAFLELESFLSTLYVENKSYEGKYHFDNSRIEFFIFKDMQENAQNIINNMIENDR 583

Query: 481 SLREAALLLTLINHPA---------------ILQEQYQELADIRYDNNELQKLWSFLFSD 525
                +++  +I  P                I +   + + ++ ++  EL  ++  +   
Sbjct: 584 IKFVESIINKMIPPPDGTILTDNPTEFIQKKIKESHKESVRNVTFEYKELAPIFEGVEEK 643

Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585
            ++      E I     +        +L++  RD   +S+    N  D+ + Y++  +  
Sbjct: 644 QIKALSNQLEHIKSFKTDYD-----SRLNKYARDFHYFSSAFAINREDLLKNYEEIRSSI 698

Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL---HEVHIQIHQIESQEA 636
           K +  L R+ +E+   I +  +  +               EV  ++  +  + A
Sbjct: 699 KDYDDLLREIKELT--IKRDKSVDDKRTLFDNKRDKWNSQEVQDEVAALNQKIA 750


>gi|297693290|ref|XP_002823953.1| PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform
           2 [Pongo abelii]
          Length = 1427

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 111/355 (31%), Gaps = 14/355 (3%)

Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
           DV++L ++ ++  ++S   A+ E ++     L        +      +        +   
Sbjct: 607 DVIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENL 666

Query: 342 LIPGNRVNFVLLSRGEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399
               +          E   + +      K    + I   L   +     E E+      +
Sbjct: 667 QNQQDSERSAHAKEMEALRAKLMKVIKEKENSLEAIKSKLDKAEDQHLVEMEDTLNKLQE 726

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
              +++          +  K+   ++  ++   ++L      + +      +     +  
Sbjct: 727 AEIKVKELEVLQAKCNEQSKVIDNFTSQLKATEEKLLDLDALQKASSEGKSEMEKLRQQL 786

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
           +   +++    + K   S K S     L    +     L    + L+++      L+K  
Sbjct: 787 EAAEKQIKHLEIEKKAESSKVSSITRELQGRELK----LTNLQENLSEVSQVKETLEKEL 842

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L   F E              +R   E + +L ++     L S+  E    ++     
Sbjct: 843 QILKEKFAEASEEAVSV------QRSMQETVNKLHQKEEQFNLLSSDLEKLRENLADMEA 896

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIE 632
           +     +R   L + KE++E  IA++   +   + +   +   L      + +++
Sbjct: 897 KFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQ 951


>gi|297693288|ref|XP_002823952.1| PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform
           1 [Pongo abelii]
          Length = 1438

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 111/355 (31%), Gaps = 14/355 (3%)

Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341
           DV++L ++ ++  ++S   A+ E ++     L        +      +        +   
Sbjct: 618 DVIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENL 677

Query: 342 LIPGNRVNFVLLSRGEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399
               +          E   + +      K    + I   L   +     E E+      +
Sbjct: 678 QNQQDSERSAHAKEMEALRAKLMKVIKEKENSLEAIKSKLDKAEDQHLVEMEDTLNKLQE 737

Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459
              +++          +  K+   ++  ++   ++L      + +      +     +  
Sbjct: 738 AEIKVKELEVLQAKCNEQSKVIDNFTSQLKATEEKLLDLDALQKASSEGKSEMEKLRQQL 797

Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519
           +   +++    + K   S K S     L    +     L    + L+++      L+K  
Sbjct: 798 EAAEKQIKHLEIEKKAESSKVSSITRELQGRELK----LTNLQENLSEVSQVKETLEKEL 853

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             L   F E              +R   E + +L ++     L S+  E    ++     
Sbjct: 854 QILKEKFAEASEEAVSV------QRSMQETVNKLHQKEEQFNLLSSDLEKLRENLADMEA 907

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIE 632
           +     +R   L + KE++E  IA++   +   + +   +   L      + +++
Sbjct: 908 KFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQ 962


>gi|297687306|ref|XP_002821158.1| PREDICTED: alpha-internexin-like [Pongo abelii]
          Length = 498

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 31/316 (9%), Positives = 78/316 (24%), Gaps = 35/316 (11%)

Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404
           G        S G D         +    +   +               +      +   L
Sbjct: 63  GLAYRRPPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRAL 122

Query: 405 EIHLKNCINHIKDQK-LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           E  L        +   +   + + +RD   QL +                   +  +   
Sbjct: 123 EAELAALRQRHAEPSRVGELFQRELRDLRAQLEEASSARSQALLERDGLAEEVQRLRARC 182

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD----NNELQKLW 519
           +   +      +        + A L  L     + ++    L ++ +     + E+ +L 
Sbjct: 183 EEESRGREGAERXXXXXXXXDGATLARL----DLEKKVESLLDELAFVRQVHDEEVAELL 238

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTE--------A 569
           + L +                L           + L  +   +      ++        A
Sbjct: 239 ATLQASSQAAAEVDVAVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAA 298

Query: 570 NIVDVRQGYQQALALYKRF---------------RLLSRQKEEIEKQIAQVTAKGEAEKT 614
              +  +  ++ +  Y+R                  L RQ  E+E++       G  +  
Sbjct: 299 RSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEER-HSAEVAGYQDSI 357

Query: 615 AILISILHEVHIQIHQ 630
             L + L     ++ +
Sbjct: 358 GQLENDLRNTKSEMAR 373


>gi|297276232|ref|XP_002801135.1| PREDICTED: protein Hook homolog 2-like [Macaca mulatta]
          Length = 494

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 87/303 (28%), Gaps = 35/303 (11%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           +  ++     A ++L+ +  P           +         +E             D  
Sbjct: 139 EESVQHVVMEAIQELMTKDTPGSLSPETYGNFDSQSRRYYFLSEEAEEGDELQQRCLD-L 197

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R      + +  Q L Q+        GR   +       K       Q   ++ +  + 
Sbjct: 198 ERQLML--LSEEKQSLAQENAALRERVGRPEGEGTPGLTAKKLLLLQSQLEQLQEENFRL 255

Query: 480 PSLREAALLLT-------------------LINHPAILQEQYQELADIRYDNNELQKLWS 520
            S RE   L                     L      L+++  EL        +L+   +
Sbjct: 256 ESGREDERLRCDELEREVAELQHRNQALTSLAQEAQALKDEMDELRQSSERAGQLEATLN 315

Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
                  E +    +         G  E  +QL+ ++R AG   A  EA    VR+   +
Sbjct: 316 SCQRRLGELRELRRQVRQLEERNAGHAERTRQLEDELRRAGSLRAQLEAQRRQVRETLLR 375

Query: 581 ALALYKRF----RLLSRQKEEIEKQIAQVTAKG---------EAEKTAILISILHEVHIQ 627
                KR          ++EE+++ + +                ++ + L + + ++   
Sbjct: 376 LQLENKRLCRQEAADRERQEELQRHLEEANRARHGLETQHRLNQQQLSELWAQVEDLQKA 435

Query: 628 IHQ 630
           + +
Sbjct: 436 LQE 438


>gi|296234418|ref|XP_002807906.1| PREDICTED: LOW QUALITY PROTEIN: myosin-14-like [Callithrix jacchus]
          Length = 1991

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 11/124 (8%)

Query: 514  ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
            EL+ L S                             + +L+ ++  A       E  +  
Sbjct: 1551 ELEALLSSKDDVGKSVHELERACRVAEQAANDLRAQVTELEDELTAAEDAKLRLEVTVQA 1610

Query: 574  VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------ILHEV 624
            ++   Q    L  R      ++ ++ KQ+     + + E+    ++          L E+
Sbjct: 1611 LKT--QHERDLQGRDEAGEERRRQLAKQLRDAEVERDEERKQRTLAMAARKKLEGELEEL 1668

Query: 625  HIQI 628
              Q+
Sbjct: 1669 KAQL 1672



 Score = 37.2 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 521  FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580
             L  D   +     + +  RL    F     + + +V+         EA I D+    ++
Sbjct: 1027 LLLEDQNSKLSKERKLLEDRL--AEFSSQAAEEEEKVKSLNKLRLKYEATIADMEDRLRK 1084

Query: 581  ALALYKRFRLLSRQKE----EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
                 +    L R+ +    E+++Q+ +   + E +  + L     E+   + + E +
Sbjct: 1085 EEKSRQELEKLKRRLDGESSELQEQMVEQQQRAE-DLRSQLGRKEEELQAALARAEDE 1141


>gi|292494056|ref|YP_003533198.1| SMC-like protein Sph2 [Haloferax volcanii DS2]
 gi|291369325|gb|ADE01555.1| SMC-like protein Sph2 [Haloferax volcanii DS2]
          Length = 644

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/265 (9%), Positives = 69/265 (26%), Gaps = 20/265 (7%)

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
             +R          ++  EL    +    +      R      +  +L  L  K    + 
Sbjct: 164 QLERRRTKLEDQIEEKEDELAEKEQEVEEYDASVSERQEVESELESKLGDLRSKRRDIND 223

Query: 445 GYGR-YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
              R   +K +    +   ++    +  +      K    E+ +         I     +
Sbjct: 224 VDRRIETEKQSLDALESEEAELEDDAEDLPEVAGGKIDEIESEISRLRTRRQEIQSTVNE 283

Query: 504 ELADIRYDNNELQ----KLWSFLFSDFVEQKYFLPEEIHQ----------RLCERGFGEL 549
             + I+++   L      +   L            + +             + +      
Sbjct: 284 LQSVIQFNEEMLSGTSSDVVDALRDADDAGGSVTDQLLGDDQVVCWTCGSEVDKSEIEGT 343

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
           L++L     +    +      + ++           +    + R+  EIE        + 
Sbjct: 344 LERLRTLREEKLEDNRDHREQLSELEDEKSTYERRQRERDRIERRLSEIES-----ERET 398

Query: 610 EAEKTAILISILHEVHIQIHQIESQ 634
             E+   L S   ++  +I  +E  
Sbjct: 399 RQERIEELKSDRSDLEAEIDSLEQT 423


>gi|284042270|ref|YP_003392610.1| ATP-dependent chaperone ClpB [Conexibacter woesei DSM 14684]
 gi|283946491|gb|ADB49235.1| ATP-dependent chaperone ClpB [Conexibacter woesei DSM 14684]
          Length = 855

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 65/203 (32%), Gaps = 12/203 (5%)

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494
           ++K+I +     R ++           +  +++    + ++     ++++A++    ++H
Sbjct: 319 YRKHIEKDPALERRFQPVFVGEPSVEDTIAILRGLKERYEVHHGVDIQDSAIIAAATLSH 378

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             I      +   I   +    KL   + S   E        +   +      E L +  
Sbjct: 379 RYISDRFLPD-KAIDLIDESASKLRIEIDSKPTEIDEIDRRIMQLEIE----REALAKES 433

Query: 555 RQVRDAGLWSATTEANIVDVRQG-----YQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            +   A   +   E   +  R       +Q+          +  + E+   +  Q     
Sbjct: 434 DEASVARRDAIEREIAELQERSAGMTAQWQREKDAISAITTVRERLEQARIEAEQAERAA 493

Query: 610 EAEKTAIL-ISILHEVHIQIHQI 631
           + ++ A L    +  +  Q+ + 
Sbjct: 494 DLQRAAELRYGEIPALEKQLAEA 516


>gi|224077915|ref|XP_002189269.1| PREDICTED: similar to myosin, heavy polypeptide 7B, cardiac muscle,
            beta [Taeniopygia guttata]
          Length = 1929

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 83/273 (30%), Gaps = 32/273 (11%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               +      +        +L   +K  +   + +K      +    +L++  +K   + 
Sbjct: 808  YTIQWNIRAFNAVKNWSWMKLFFKIKPLLKSAQTEKEMSNLKEEF-QKLKEALEKSEAKR 866

Query: 444  SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503
                       + ++      +  Q +L   +      ++    L   +    +++    
Sbjct: 867  KELEEKQVSMIQEKNDLALQLQAEQDNLADAEERCDLLIKSKIQLEAKVK--ELMERVED 924

Query: 504  ELADIRYDN-------NELQKLWSFL------FSDFVEQKYFLPEEIHQRLCE-RGFGEL 549
            E               +E  +L   +       +   ++K+    ++   + E  G  E+
Sbjct: 925  EEEMTSELTAKKRKLEDECAELKKDIDDLEITLAKVEKEKHATENKVKNLIEEMAGLDEI 984

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA-- 607
            + +L ++           +  + D++    +   L K    L +Q +++E  + Q     
Sbjct: 985  IAKLTKE---KKALQEAHQQALDDLQAEEDKVNTLTKAKVKLEQQLDDLESSLEQEKKVR 1041

Query: 608  ----------KGEAEKTAILISILHEVHIQIHQ 630
                      +G+ + +   +  L     Q+ +
Sbjct: 1042 MDLERAKRKLEGDLKLSQESVMDLENDKQQLDE 1074



 Score = 37.9 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 79/272 (29%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       + +  ++    +     + +       + +  
Sbjct: 1557 IQLELNQIKSEMDRKLAEKDEEFENLRRNHQRAMDSMQASLDAEARAKNEAVRLRKKMEG 1616

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ-RLMQSSLVKGKLSKKPSLREAALLL 489
             L ++  +    +     + K   + + Q    Q  L  +      L ++    E     
Sbjct: 1617 DLNEMEIQLNHANRQAAEFQKLARQLQAQIKDLQIELDDTQRHNDDLKEQVGALER---- 1672

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
                +  +L E  +  A +       +     L            + +     ++     
Sbjct: 1673 ---RNNLLLAEVEELRAALEQAERSRKLAEQELLEATERVTLLHSQNMGLINQKKKLEAD 1729

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + QL  +V DA       E                 K+ +     L R K+ +E+ I  +
Sbjct: 1730 VSQLSNEVEDAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDL 1789

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1790 QMRLDEAEQIALKGGKKQIQKLEARVRELEGE 1821


>gi|221506353|gb|EEE31988.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 413

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 10/121 (8%)

Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR----QGYQ 579
              +  +            +         L+  +R A           ++V     +   
Sbjct: 281 DILLSHQRLQRARREATRQDESLRGEEASLEAFIRVASEKREREGQRSLEVLRQRVENQI 340

Query: 580 QALALYKRFRLLSRQKE--EIEKQIAQVTA----KGEAEKTAILISILHEVHIQIHQIES 633
             LA+ +    L RQ+E  E+E+++  + A        E+   +I+    +  QI Q+  
Sbjct: 341 AELAVLRIEAALERQREMVELERRLDDLLAPSVDAQSGERVRQMIAEADGIQRQIEQLAE 400

Query: 634 Q 634
           +
Sbjct: 401 E 401


>gi|194894502|ref|XP_001978079.1| GG17887 [Drosophila erecta]
 gi|190649728|gb|EDV47006.1| GG17887 [Drosophila erecta]
          Length = 1398

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 67/213 (31%), Gaps = 10/213 (4%)

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
             +    R ++  ++   + +   +     +          ++  ++L     + +  LR
Sbjct: 703 LLRETLQRKEEDLKELEEQLTAVRQDLDDMSVQMKISQDQHKIQLANLQNQLQADQEKLR 762

Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           E      L+     L++Q + +      N ++  +   L     +          +    
Sbjct: 763 E------LLQTQDKLEQQKELMEVD--QNQQITMIRKELAETTNQLSECQERLTVKEAQL 814

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE--EIEKQ 601
               + L++++ +         + E       +   +   L  +     +Q +  + E  
Sbjct: 815 AEIQQQLQEVNEERTTLQEQLLSREQESGLDSEQASRLQVLEHQLLAKEQQIQLNQAELD 874

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           I Q T +G  E+       L     Q+  +ESQ
Sbjct: 875 ILQETLRGNEEQLLANKEQLQAKESQLQALESQ 907


>gi|194018594|ref|NP_001123384.1| kinectin 1 (kinesin receptor) [Xenopus (Silurana) tropicalis]
 gi|189441583|gb|AAI67328.1| ktn1 protein [Xenopus (Silurana) tropicalis]
          Length = 1375

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 83/219 (37%), Gaps = 5/219 (2%)

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             +    ++++D LQ   +K  +  +      ++    ++  G SQ      + KG   ++
Sbjct: 847  EKEGTIKSVQDLLQAEQRKANSHEANVTALNQEIKSLKEALGNSQLEKAEQISKGAQVQE 906

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                  +   +L N     +E+ +++AD      +L K    L +   E +  L +    
Sbjct: 907  LQNELRSKEESLKNIEMRFKEREKDIADRERQIQDLDKECKVLKAHTEEVRKQLQQRESA 966

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI- 598
                      L +   +VR+        E ++ D  Q  Q   A     R+ + + ++  
Sbjct: 967  SSQAANLQSRLAEQQEKVRNIEAILLEKEKSVNDKSQELQTLRAENNVLRVQACELQQKH 1026

Query: 599  EKQIAQVTAKGEAEKTAILISI----LHEVHIQIHQIES 633
            E+Q+ Q ++   +E+    ++     + E+  ++  + S
Sbjct: 1027 EQQMEQASSATHSEEVLKTLAEKDRHIRELQSELESLRS 1065


>gi|168058875|ref|XP_001781431.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667068|gb|EDQ53706.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 446

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQG-YQQALALYKRFRLLSRQKEEIEKQI-----AQV 605
           +L  Q ++     A  EA    +    ++Q+ +       L R+  E+E ++      Q 
Sbjct: 263 ELRNQYQEEKNRVAELEAGRSKLEDNFWRQSESSKTENEQLKRRIAELEAEMITVITQQG 322

Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
                +     L   +H +  Q+ + + Q A++E
Sbjct: 323 EVNLASTSLQELEKQVHALKEQLKERDIQIALLE 356


>gi|145546683|ref|XP_001459024.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426847|emb|CAK91627.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1221

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 35/320 (10%), Positives = 96/320 (30%), Gaps = 16/320 (5%)

Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376
           +    D D  G +      +           V     +  +     ++   +        
Sbjct: 670 VFEIKDKDARGQKN----KEGYQQRYADDIIVTKEDKADLKTTRDNLKTQLQDITAPQNA 725

Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-RYYYSQAIRDRLQQL 435
            ++   +   K+ T+  S      +   +  ++      K  +  R    +     +Q+L
Sbjct: 726 INISSKEDQIKQLTDKESTLKQQYKVAYDTLVEKKRETEKHIQETRKQIMEEFEAEIQEL 785

Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
            Q   ++ +     ++K    ++            L + + + +    E      L+   
Sbjct: 786 EQNQQSKVNKEAEKYEKTKNEKEIHQTKYEKEIGKLQR-EHTDELKKLEKDYDARLLEER 844

Query: 496 AILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
              +   +E    +    E ++++      +    +    ++I Q+  ++G      ++ 
Sbjct: 845 QQRERMEKEYNKEKEKYRETIEQIRKETIGEIEALEEQNQQQILQK-TDQGLKAK-SEVS 902

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK-GEAEK 613
              +         E    +++   +Q   L  +   L    EE  KQI       GE E 
Sbjct: 903 MTKKKIQSLLQEEEKQNENLKDYNEQKKQLDDQNHQLKIAIEEQLKQIQDKDKTIGEKE- 961

Query: 614 TAILISILHEVHIQIHQIES 633
                  ++E+  +  ++E 
Sbjct: 962 -----RKIYELKKRSQELEK 976


>gi|119569943|gb|EAW49558.1| chondroitin sulfate proteoglycan 6 (bamacan), isoform CRA_b [Homo
           sapiens]
          Length = 1218

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 36/346 (10%), Positives = 93/346 (26%), Gaps = 24/346 (6%)

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T     ++  L K     +   + +   L    K   +                    D 
Sbjct: 182 TEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDE 241

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            S  R        +L        D +   E + R   T     + E             +
Sbjct: 242 LSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQL-------SAE 294

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    Q  +  L+    +     +   R      R +  +   ++  + +  + K +  
Sbjct: 295 RQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSV 354

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK--LWSFL--FSDFVEQKYFLPE 535
               E  +               ++    ++ + E +   +   L      +  K     
Sbjct: 355 KEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIA 414

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            IH+ L +               +             D+ +   +   L +++  +  +K
Sbjct: 415 AIHKDLEDTE------------ANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKK 462

Query: 596 EEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMIEG 640
           +E++ +   +  +  AE +         E   Q+ +  + +A++ G
Sbjct: 463 DELQSERNYLWREENAEQQALAAKREDLEKKQQLLRAATGKAILNG 508


>gi|114626403|ref|XP_001159554.1| PREDICTED: centrosomal protein 110kDa isoform 5 [Pan troglodytes]
          Length = 2278

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 31/299 (10%), Positives = 79/299 (26%), Gaps = 29/299 (9%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK----DQ 418
           +R +     +    E           E  +       +        K     I+     +
Sbjct: 429 LRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISE 488

Query: 419 KLRYYYSQAIRDRLQ-------QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
             +    + +  RLQ       +     +           K    +D +     L     
Sbjct: 489 AGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDP 548

Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
               +  +   +E  L +    +  +     + L+ I  +  E++ L   L    +    
Sbjct: 549 KHSHMKAQKRGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANE 608

Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-------DVRQGYQQALAL 584
            L +++   +   G  E L  +  Q   A                   +V Q   Q   +
Sbjct: 609 ALKKDLEGVIS--GLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIV 666

Query: 585 YKRFRLLSRQKEEIEKQIAQVTA--------KGEAEKTAILISILHEVH-IQIHQIESQ 634
                 + ++  E+E  + +           +G+       +     +   + +Q++ +
Sbjct: 667 AMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEE 725


>gi|47937470|gb|AAH72043.1| LOC432330 protein [Xenopus laevis]
          Length = 457

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 112/333 (33%), Gaps = 17/333 (5%)

Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370
           +     +++  +G             L              LL  G  P           
Sbjct: 23  FSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQRLALLHEGTGPRVISAFVEIIF 82

Query: 371 FEKLIVESLPLVDMLWKRET-ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
                   +   ++  +R     +     D++   +  + N +      +   YY    +
Sbjct: 83  DNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKNDVMNLLESAGFSRSNPYYIVK-Q 141

Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            ++ Q+     ++     R       + ++K  S  LM+ +  K +           LL 
Sbjct: 142 GKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMKETEGKREKIN-------ELLK 194

Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +      L+E+ +ELA  +  +   + L   +++  + +     +E+  +    G    
Sbjct: 195 YIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDELSSKRETSGEKS- 253

Query: 550 LKQLDRQVRDAGLWSATTEANIVDVR------QGYQQALALYKRFRLLSRQKEEIEKQIA 603
            +QL    +DA       E  + +++      +  ++ L+  ++ ++  R K E++ +  
Sbjct: 254 -RQLRDAQQDARDKMEEIERQVRELKSKISAMKEEKEQLSSERQEQIKQRTKLELKAKDL 312

Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
           Q    G +E+   L+    ++  +I + + + A
Sbjct: 313 QDELAGNSEQRKRLLKERQKLLEKIEEKQKELA 345


>gi|28958118|gb|AAH47324.1| Structural maintenance of chromosomes 3 [Homo sapiens]
          Length = 1217

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 36/346 (10%), Positives = 93/346 (26%), Gaps = 24/346 (6%)

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T     ++  L K     +   + +   L    K   +                    D 
Sbjct: 182 TEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDE 241

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            S  R        +L        D +   E + R   T     + E             +
Sbjct: 242 LSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQL-------SAE 294

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    Q  +  L+    +     +   R      R +  +   ++  + +  + K +  
Sbjct: 295 RQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSV 354

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK--LWSFL--FSDFVEQKYFLPE 535
               E  +               ++    ++ + E +   +   L      +  K     
Sbjct: 355 KEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIA 414

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            IH+ L +               +             D+ +   +   L +++  +  +K
Sbjct: 415 AIHKDLEDTE------------ANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKK 462

Query: 596 EEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMIEG 640
           +E++ +   +  +  AE +         E   Q+ +  + +A++ G
Sbjct: 463 DELQSERNYLWREENAEQQALAAKREDLEKKQQLLRAATGKAILNG 508


>gi|61657934|ref|NP_001013414.1| myosin, heavy chain 1, skeletal muscle, adult [Gallus gallus]
 gi|23379831|gb|AAM88910.1| fast myosin heavy chain HCIII [Gallus gallus]
          Length = 1940

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 82/277 (29%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
                  +  +  +L   +    +       +      ELE   K     ++D +      
Sbjct: 1352 EEDQEAKGELQRALSKANSEVAQWRTKYEADAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1411

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1412 NAKCASLEKTKQRLQNEVEDLMIDVERANSACAALDKKQKNFDKILSEWKQKYEETQTEL 1471

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N   Q+  S L     E         
Sbjct: 1472 EASQKESRSLSTELFKMKNAYEESLDHLETLKRENKNSQQEISDLTEQIAEGGK------ 1525

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +A++ +     +       R   L  +  +
Sbjct: 1526 -----------AIHELEKVKKQIEQEKSEIQASLEEAEASLEHEEGKILR---LQLELNQ 1571

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1572 VKSEIDRKIAEKDEEIDQLKRNHLRIVESMQSTLDAE 1608



 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 25/268 (9%), Positives = 80/268 (29%), Gaps = 17/268 (6%)

Query: 376  VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             +    +D     + E       +    +E         I+ +       + +   L ++
Sbjct: 1570 NQVKSEIDRKIAEKDEEIDQLKRNHLRIVESMQSTLDAEIRSRNEALRLKKKMEGDLNEM 1629

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK-LSKKPSLREAALLLTLINH 494
              +    +       K     +     +Q  +  +L   + L ++ ++ E          
Sbjct: 1630 EIQLSHANRVAAEAQKNLRNTQGVLKDTQIHLDDALRTQEDLKEQVAMVERRA------- 1682

Query: 495  PAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
              +LQ + +EL          +K+    L       +    +       ++     + Q+
Sbjct: 1683 -NLLQAEIEELRAALEQTERSRKVAEQELMDASERVQLLHTQNTSLINTKKKLETDISQI 1741

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKG 609
              ++ D    +   E                 K+ +     L R K+ +++ +  +  + 
Sbjct: 1742 QSEMEDTIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLDQTVKDLQHRL 1801

Query: 610  EAEKTAIL---ISILHEVHIQIHQIESQ 634
            +  +   L      + ++  ++ ++E +
Sbjct: 1802 DEAEQLALKGGKKQIQKLEARVRELEGE 1829


>gi|73964693|ref|XP_849619.1| PREDICTED: similar to EEA1 (Early Endosome Antigen, Rab effector)
           homolog family member (eea-1) [Canis familiaris]
          Length = 1573

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 7/111 (6%)

Query: 515 LQKLWSFLFSDFVE----QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL-WSATTEA 569
            Q+L     S        +      ++ ++  E  F    ++LD   R+  +   A  EA
Sbjct: 272 HQELRDLAASKDARIKDLEGKLNSVQLSRKKEEEVFRRKHEELDHLARERDVALVAVKEA 331

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620
           +   +R    +AL L  R   L  Q    E    +  A  E +     +  
Sbjct: 332 HAEQLRALEARALELQARCETLELQLRRAE--WRRADALKEKDAAVDQLRE 380


>gi|15599478|ref|NP_252972.1| exonuclease [Pseudomonas aeruginosa PAO1]
 gi|17433243|sp|Q9HWB8|SBCC_PSEAE RecName: Full=Nuclease sbcCD subunit C
 gi|9950502|gb|AAG07670.1|AE004844_2 probable exonuclease [Pseudomonas aeruginosa PAO1]
          Length = 1211

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 85/295 (28%), Gaps = 19/295 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK-NCINHIKDQ 418
            D   + +              +     ++    +      E  +             + +
Sbjct: 777  DEHWQRWQADPLRTFQALGESIEQRRQQQARLQQIEQRLQELKQRCDESSWQLKQSDEQR 836

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                   +  +  L +L  +       +                +Q  +++        +
Sbjct: 837  NEARQAEERAQAELAELNGRLGAHLGQHACAQDWQLSLEHAAQAAQSAVETLQAPLDSLR 896

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADI-----RYDNNELQKLWSFLFSDFVEQKYFL 533
            +  LR A  L  L       Q+++Q L           +N        L     EQ    
Sbjct: 897  EEQLRLAEALEHLQQQRQRQQDEFQRLQADWQAWRERQDNLDDSRLDALLGLSEEQATQW 956

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             E++ QRL E    +   + +RQ +         E +   +    +Q     +R RL + 
Sbjct: 957  REQL-QRLQEEITRQQTLEAERQAQLLQHRRQRPETDREALEDNLRQ-----QRERLAAS 1010

Query: 594  QKEEIE--KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
            ++  +E   Q+     +   E++  L++ L     +  +      +I   G  SG
Sbjct: 1011 EQAYLETYSQLQADNQR--REQSQALLAELERARAEFRRWGRLNELI---GSSSG 1060


>gi|15606888|ref|NP_214269.1| hypothetical protein aq_1849 [Aquifex aeolicus VF5]
 gi|14916889|sp|O67701|Y1849_AQUAE RecName: Full=Uncharacterized protein aq_1849
 gi|2984132|gb|AAC07668.1| putative protein [Aquifex aeolicus VF5]
          Length = 219

 Score = 38.3 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 56/155 (36%), Gaps = 8/155 (5%)

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE- 543
             LL  L+     + E  Q L    + +   ++L   + S        +   + ++L + 
Sbjct: 54  EKLLGVLLYFAEFVYENRQNLEGSVFYSPLYEELRD-IVSYIEGGIKNVKSSLEKQLADV 112

Query: 544 -RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA----LALYKRFRLLSRQKEEI 598
              + E++++L + +          E     +  G   A      L +    ++++ + I
Sbjct: 113 HVEYTEVVEKLGQIMEVVE-RLKQGEIEYGALPTGLDPAGALGEILRESLSEIAKKIDNI 171

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
           +++I ++    +  K          V  +I + +S
Sbjct: 172 KRKIYELDDTIKKVKNYAEAGEEELVKAEITRTKS 206


>gi|327470652|gb|EGF16108.1| cell division protein Smc [Streptococcus sanguinis SK330]
          Length = 1178

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 82/257 (31%), Gaps = 46/257 (17%)

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-K 475
           D + R  Y   +  +L    ++            ++ A +  ++   +   Q+   K  +
Sbjct: 219 DGQRRELYLDVLVAQLTANKERLTKAEEDLTNIQQELAAYYSKRDELEVENQTLKAKRHE 278

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN-----------NELQKLWSFL-- 522
           L++  S  +A+LL        ++ +  +++   + ++             L  L   L  
Sbjct: 279 LNQTLSDNQASLLEL----TRLISDLERQIDLSKLESSQAATSRRENEERLATLSEKLAQ 334

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
               +E K     +I  +L +       + +     +   +S   +  I  +R+   Q +
Sbjct: 335 IESNIEDKQAELSQIAAKLSDNE-----QSIAALEAELADFSDDPDQLIEHLRE---QYV 386

Query: 583 ALYKRFRLLSRQKEEIEKQIA--------------------QVTAKGEAEKTAILISILH 622
            L +    LS     +E Q+A                    + +   E      L     
Sbjct: 387 KLMQEEANLSNDLTSLESQLASELKLAESKKADYAKLQADLEASQTQEQAGLEELEIARQ 446

Query: 623 EVHIQIHQIESQEAMIE 639
            +   +   +SQ  ++E
Sbjct: 447 ALKNLLADYQSQVQLVE 463



 Score = 37.9 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 94/282 (33%), Gaps = 12/282 (4%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             +  +  ++V  L        +  E+ +    +  A      +  + +   +  R+  +
Sbjct: 221 QRRELYLDVLVAQLTANKERLTKAEEDLTNIQQELAAYYSKRDELEVENQTLKAKRHELN 280

Query: 426 QAIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           Q + D       L +L      +         + A  R +       +   L + + + +
Sbjct: 281 QTLSDNQASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLATLSEKLAQIESNIE 340

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE--QKYFLPEEI 537
               E + +   ++         +      + ++   +L   L   +V+  Q+       
Sbjct: 341 DKQAELSQIAAKLSDNEQSIAALEA-ELADFSDDP-DQLIEHLREQYVKLMQEEANLSND 398

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L  +     LK  + +  D     A  EA+    + G ++     +  + L    + 
Sbjct: 399 LTSLESQ-LASELKLAESKKADYAKLQADLEASQTQEQAGLEELEIARQALKNLLADYQS 457

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             + + ++ A  + ++T  +  +L ++  +  +  S EA+++
Sbjct: 458 QVQLVEKLEADYKHQQT-KMFELLDDLKNKQARSNSLEAILK 498


>gi|312129428|ref|YP_003996768.1| ATP-dependent chaperone clpb [Leadbetterella byssophila DSM 17132]
 gi|311905974|gb|ADQ16415.1| ATP-dependent chaperone ClpB [Leadbetterella byssophila DSM 17132]
          Length = 863

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/141 (9%), Positives = 48/141 (34%), Gaps = 7/141 (4%)

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
           I     L+ ++Q +        +   +   +   +             R+ +      ++
Sbjct: 318 IEKDKALERRFQAVMVDEPTVPDAISILRGIKEKYEVHHGV-------RIQDDAVIAAVE 370

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
              R + D  L     +       +   +  ++ +    L R+  ++E +   +  + + 
Sbjct: 371 LSHRYISDRFLPDKAIDLMDEAAAKLRLEMDSMPEEMDELRRKIMQLEIEREAIRREKDQ 430

Query: 612 EKTAILISILHEVHIQIHQIE 632
           EK A+L   + +++ +   ++
Sbjct: 431 EKEALLSKEISDLNEEYSALK 451


>gi|297526496|ref|YP_003668520.1| hypothetical protein Shell_0490 [Staphylothermus hellenicus DSM
           12710]
 gi|297255412|gb|ADI31621.1| hypothetical protein Shell_0490 [Staphylothermus hellenicus DSM
           12710]
          Length = 630

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 56/208 (26%), Gaps = 14/208 (6%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
             +  YY     D  + L    I     Y    +   R    K   +  ++       + 
Sbjct: 132 DLIMEYYKNEYSDLDKILEDPRIRRSLRYAFKKRYKKRLDKVKEGVKAYVEKYGPIIMVR 191

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           +        +  +      I++   + + ++      L            E         
Sbjct: 192 QIEEKIWRKIKESEEERKMIMERLRRRMEELSLKLRPL------------EDVERKSSVF 239

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             RL +        +                 +   +     +A+   KR   L  +++E
Sbjct: 240 MDRLHDIESSVFFGEKTGYDEHEKDELLRRYLDFEKLLAEQVEAIEKEKRE--LENRRKE 297

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVH 625
           +EK   +   K E E   I+ S L ++ 
Sbjct: 298 LEKAEQEYRRKAEEEAQRIIESELRKIE 325


>gi|281420019|ref|ZP_06251018.1| conserved hypothetical protein [Prevotella copri DSM 18205]
 gi|281405819|gb|EFB36499.1| conserved hypothetical protein [Prevotella copri DSM 18205]
          Length = 161

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 28/139 (20%), Gaps = 5/139 (3%)

Query: 74  LSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI-----EVATDFF 128
           +  +   LG  F  + + LA    + L          +   +                FF
Sbjct: 8   IDLVMRYLGKDFPAACRWLAEEHQIQLEEDSSSGSSSDSSSSGDDSGKSSFDASRYARFF 67

Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188
            H   N   +R  +   +                      L+            I    L
Sbjct: 68  EHPWLNQAARRFLFEERKIDWRVVNWCRLTSWTDKKGINWLQIPYFDTDGRLIGIQNRNL 127

Query: 189 LIDGDNSATSYDRFRNRLI 207
               +  A  +        
Sbjct: 128 DYKKEQDAPRFRFPYGARC 146


>gi|281353951|gb|EFB29535.1| hypothetical protein PANDA_002602 [Ailuropoda melanoleuca]
          Length = 2167

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 73/212 (34%), Gaps = 8/212 (3%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            + L   F+K        G+     A     +  S+  +    +   +  + +  E  L  
Sbjct: 1821 EELTSKFEKLQALQQMDGKNKPTEALEESAEKKSKSHVVQPKLPTNMEAEHNDLEFKLAG 1880

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC---ERGF 546
                   + +E  +   D+R    E Q+    +  ++ ++     ++  + L        
Sbjct: 1881 AEQEKQKLGKEIVKLQKDLRMLRKEHQQELDIMKKEYEQEMEEKIKQEQEDLELKHNSTL 1940

Query: 547  GELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQ 604
             +L+++   Q+         T +  I   ++   + L  ++     L R+  E E  + +
Sbjct: 1941 KQLMREFHTQLAQKEQELEMTIKETIDKAQEVEAELLESHQEETNQLYRKIAEKEDDLQR 2000

Query: 605  VTAKGEA---EKTAILISILHEVHIQIHQIES 633
               + E     +   + + + ++  Q+  +++
Sbjct: 2001 TAKRYEEILDAREEEMTAKVTDLQTQLEGLQN 2032


>gi|257462740|ref|ZP_05627148.1| TP901 family phage tail tape measure protein [Fusobacterium sp.
           D12]
 gi|317060380|ref|ZP_07924865.1| predicted protein [Fusobacterium sp. D12]
 gi|313686056|gb|EFS22891.1| predicted protein [Fusobacterium sp. D12]
          Length = 1528

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 80/237 (33%), Gaps = 24/237 (10%)

Query: 417 DQKLRYYYSQAIRD-------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
           ++  ++ Y   ++        +   L +      SG  +        +            
Sbjct: 627 NKNEKFIYEDYLKQLDSLNVSKRSTLRRDISEAISGIAKKSYNPDGDKKGSKKDPFKELI 686

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL--ADIRYDNNELQ-KLWSFLFSDF 526
           S +  K+ +   ++E   +  L       ++   E+  A   +    L  K+ + L    
Sbjct: 687 SELGAKIKRDLGIQEK--IEILERAKEKFKKNINEINTAIDNFKIEALANKIKNALEGVN 744

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           +    +   E   ++   G   +L+QL+       +      +++V   +   + L   K
Sbjct: 745 LRNHEYSSGEQLGKIQ-AGEKLVLQQLE-------MARKVNNSDLVRDLEKQMKQLDFTK 796

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIH-QIESQEAMIE 639
               +  + +EIEK +     + E     K  +  + +  +  +I   + + +A+IE
Sbjct: 797 FLIPVEEKIKEIEKNLKSAQEQSEKIKENKDNLSSAEIKRIQTEIAGTVAANKALIE 853


>gi|225629925|ref|YP_002726716.1| ankyrin repeat domain protein [Wolbachia sp. wRi]
 gi|225591906|gb|ACN94925.1| ankyrin repeat domain protein [Wolbachia sp. wRi]
          Length = 698

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 50/136 (36%), Gaps = 8/136 (5%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-------RGFGELLKQLDRQVRDAGLWSAT 566
           + ++L   L     ++     E++  RL                        +    +  
Sbjct: 443 DNKELAKLLIKYGADRSLIKDEDLIDRLNSMCDQPSEVVSSTSSHSKTHNAMETPEEAEK 502

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
            + + V +++   Q     K+  LL +Q +++E + A +  K +  ++    + +  +  
Sbjct: 503 VKKSKVKLKELRTQLKDKQKKNELLKQQIQDLESEKATLKDKLDKTESQHSKTEVL-LEK 561

Query: 627 QIHQIESQEAMIEGFG 642
              ++E  ++ I G+G
Sbjct: 562 AQKELEESKSCIAGYG 577


>gi|224074462|ref|XP_002193625.1| PREDICTED: leucine rich repeat containing 45 [Taeniopygia guttata]
          Length = 696

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 89/283 (31%), Gaps = 14/283 (4%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           + +        + +    V     +E + +     D    L   L       K+  LR  
Sbjct: 344 KVHNLGDLVNAMKQEQNSVAECHFKELQQQKQEAADREGRLLHDLS--AASEKNLLLRNQ 401

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483
               +  R +   Q  + +            + R  +   +  M+    K  L    S+R
Sbjct: 402 -VDELERRCKV-QQDQLFQVKQDLTNTTAELKLRAVEAEERLEMEKRRFKQSLEDMESIR 459

Query: 484 EAALLLT---LINHPAILQEQYQELADIRYD-NNELQKL-WSFLFSDFVEQKYFLPEEIH 538
              +      +      + ++ Q L  IR   + EL ++  + +      ++  +     
Sbjct: 460 VKEVDRMAQQMEASERSMHDRIQRLEAIRISLDEELSQVKAAAITERGRAEEELIKVRSQ 519

Query: 539 QRLCERG-FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            RL E+     L ++L                    + +   +A  L      L R+ +E
Sbjct: 520 ARLEEQQRLEHLEEKLRLMSESRDDAQNCCLKQKEMLAETQAKAKQLSLYADGLRRRLDE 579

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           +++ + +       EK   L  +  E+  QI  +E++    +G
Sbjct: 580 LQQDLDRKE----EEKVTELNKVKVELQEQIGHLEAERTAQDG 618


>gi|189237907|ref|XP_969118.2| PREDICTED: similar to GA18707-PA [Tribolium castaneum]
          Length = 4912

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 90/277 (32%), Gaps = 10/277 (3%)

Query: 363  IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
            +R                 +    +           D   +     +     +KD+  R 
Sbjct: 4330 MRVKQLEDELGACQNRNEALKAELETLRRESVATNSDASTKF-QECQKQNLLLKDELERL 4388

Query: 423  YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                 ++ +L +   K + E        +++ +    +  S   +  ++      +  + 
Sbjct: 4389 RKINDLQQKLAKDLDKQLRECKMNLEECQRDVKSSKDRKVSFHNIHVNVNDLTTEELVAE 4448

Query: 483  REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF---SDFVEQKYFLPEEIHQ 539
             E  L         ++ E  + L   R +N E ++    L        ++     +E  +
Sbjct: 4449 LER-LSNECEQQRRMIHELEESLRKCRENNREFKQENDELKIERQFMRQEYGVPKDERLR 4507

Query: 540  RLCERGFGEL---LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
            +L +    +       + R   D     A  E +  D ++   +   L +    L  +K 
Sbjct: 4508 QLRDEQKRKTGGTSDDVSRATDDISTLQAKLELSENDNKKLKDELNTLTQERDNLLSEKC 4567

Query: 597  EIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQI 631
            E++++I +++   EA  E+   L  ++ ++  +I  +
Sbjct: 4568 ELQQKIQRMSGDYEAVLEEKEKLNLVISDLEKKIEDL 4604



 Score = 37.6 bits (85), Expect = 6.1,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 91/260 (35%), Gaps = 19/260 (7%)

Query: 372  EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431
            + L  E+  L D L K + E  +      + + +   K   + +K+ K      +     
Sbjct: 1899 DALDKENKSLKDELNKLKQELAAAKQDTSKGDSDNENKRLKDDVKNLKSENQSLKDENKS 1958

Query: 432  LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
            L+    K   E +      + +++ ++       L++    + K       +        
Sbjct: 1959 LKDELNKLKQELANRAGVVQDDSKDKEFAKERDDLLKQIAAQKKEIADLLDK-------- 2010

Query: 492  INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
            I  PA  ++    L ++   N E QKL S +     + K     ++          +++ 
Sbjct: 2011 IKQPAKSEDTT-TLKELENRNKENQKLRSTIEDLERQLKELQKAQMDVPKASPEIDKVVN 2069

Query: 552  QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-------EIEKQIAQ 604
             L + +      +   E     +++       L K+   L    +       +++K+IA+
Sbjct: 2070 DLKQSLEKEEARARDLE---DKLKKAQDDNDGLRKKVNELENSLKKCQDGNEDLKKRIAE 2126

Query: 605  VTAKGEAEKTAILISILHEV 624
            + A+G+  K   +   + ++
Sbjct: 2127 LKAQGDILKKKAIEQEIAQI 2146


>gi|171694914|ref|XP_001912381.1| hypothetical protein [Podospora anserina S mat+]
 gi|170947699|emb|CAP59861.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1320

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 78/278 (28%), Gaps = 22/278 (7%)

Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428
            A      +             +         +    I     +   K ++LR    Q  
Sbjct: 155 EAVIFCHQDESMWPMSEPSALKKRFDEIFEAMKYTKVIDNLKVLRKRKGEELRELKIQET 214

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
           +D++     K   +  G             Q   S  L Q      ++  K     + L 
Sbjct: 215 QDKVN----KERADKVGRLIIQMSQEIEEAQTKCSDILKQMGAKAKEIKDKHEQANSFL- 269

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD----------FVEQKYFLPEEIH 538
                   I+ +   +   + Y +  +++L S +               E    +   + 
Sbjct: 270 -------KIVNDLQNKTEKLEYKSEAIRELRSRIEELPDSDDVLRNTLAEYAQTIERTVA 322

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            R  ++   + L+   +Q RD        +      +  Y++ LA   R    + ++ EI
Sbjct: 323 DRDRKQAQQQELQADLKQSRDRHTAKVAEQGKHQSDKDKYERQLATRDRMVHEAAERHEI 382

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
                 +           +   L++   ++ +++   A
Sbjct: 383 RGYDGDLDGDLIESFYERIQKALNDKKRELERLQKSNA 420


>gi|165973990|ref|NP_001107183.1| myosin-7 [Canis lupus familiaris]
 gi|125987843|sp|P49824|MYH7_CANFA RecName: Full=Myosin-7; AltName: Full=Myosin heavy chain 7; AltName:
            Full=Myosin heavy chain slow isoform; Short=MyHC-slow;
            AltName: Full=Myosin heavy chain, cardiac muscle beta
            isoform; Short=MyHC-beta
 gi|83026770|gb|ABB96412.1| slow myosin heavy chain beta [Canis lupus familiaris]
          Length = 1935

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/269 (10%), Positives = 98/269 (36%), Gaps = 16/269 (5%)

Query: 384  MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443
               K E E +     +E  + + +    ++ ++        S+    R+++  +  + E 
Sbjct: 1566 NQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEM 1625

Query: 444  SGYGRYWKKNARHRDQKGPS-QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502
                 +  + A    ++    Q L++ + ++   + + +      +  +     +LQ + 
Sbjct: 1626 EIQLSHANRMAAEAQKQVKGLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAEL 1685

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQV 557
            +EL  +       +KL      +  E+   L  +    +      +    +L  +++  V
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1745

Query: 558  RDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607
            ++        +  I        ++++    +  L +  + + +  ++++ ++ +      
Sbjct: 1746 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

Query: 608  KGEAEKTAILISILHEVHIQIHQIESQEA 636
            KG  ++   L + + E+  ++   + + A
Sbjct: 1806 KGGKKQLQKLEARVRELENELEAEQKRNA 1834


>gi|90579523|ref|ZP_01235332.1| cell division protein MukB [Vibrio angustum S14]
 gi|90439097|gb|EAS64279.1| cell division protein MukB [Vibrio angustum S14]
          Length = 1487

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
            L+  L   P        +         EL+ L   +      + YF   +  + L +   
Sbjct: 925  LVSALDADPEQFDALQADYEAADQKLQELKTLIFAVADLAERRHYFSYADAVELLSKS-- 982

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQG---YQQALALYKRFRLLSRQ-KEEIEKQI 602
             EL +QL  ++  A      +  ++   R     Y Q +A  K       +  +E E+++
Sbjct: 983  SELNEQLKAKLATAEQARGRSRESLKQARAQANQYNQLMASLKSSHQAKMETVQEFEREL 1042

Query: 603  AQVTAKGEAEKTAILISILHEVHIQIH 629
             ++  + + E          E++ ++H
Sbjct: 1043 QELGVRADVEAEERARIRRDELNERLH 1069


>gi|13345187|gb|AAK19244.1|AF312916_1 reticulocyte binding protein 2 homolog A [Plasmodium falciparum]
          Length = 3130

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/103 (12%), Positives = 36/103 (34%), Gaps = 4/103 (3%)

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            + L  +    L ++   Q++         +  +       +Q     ++   L RQ++E 
Sbjct: 2751 EELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQER 2810

Query: 599  EKQIAQVTAKGEAEKTAILISILHE----VHIQIHQIESQEAM 637
             ++  Q   + E E        L +       +  +++ +E +
Sbjct: 2811 LEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEEL 2853


>gi|47214954|emb|CAG10776.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2005

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 73/223 (32%), Gaps = 23/223 (10%)

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +R        +++Q   +  I +        K   R   +     +++Q+  V       
Sbjct: 1076 IREEIRVRAGEQIQMKTEVSILQQKKPPIIEKVVVREVLKVEQDPQMLQAVKVFKDEISG 1135

Query: 480  PSLREAAL-------------LLTLINH--PAILQEQYQELADIRYDNNELQKLWSFLFS 524
             S +   L             L  +I H  P I+  + +++        E +K+ S L  
Sbjct: 1136 ESNKIRLLNEQIFQTKGEISALEKIIPHIKPKIVTREIKKVEQDPELITESEKIRSELKD 1195

Query: 525  DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
            +         E +             +++  +     +     E   +D      + + L
Sbjct: 1196 EKTGNSTLAQELL-------ELQSYFQEVQSRKPKVEVKEIINEIYRIDPN-TEMEIMRL 1247

Query: 585  YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627
             K+ +   +Q   +E++I QVT++ +  +       L EV  +
Sbjct: 1248 RKQIQESDKQLANLEREIKQVTSELDVRRAEKPKVELREVLQE 1290


>gi|42627759|tpe|CAD59554.1| TPA: SMC3 protein [Bos taurus]
          Length = 1217

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 36/346 (10%), Positives = 93/346 (26%), Gaps = 24/346 (6%)

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T     ++  L K     +   + +   L    K   +                    D 
Sbjct: 182 TEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDE 241

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            S  R        +L        D +   E + R   T     + E             +
Sbjct: 242 LSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQL-------SAE 294

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    Q  +  L+    +     +   R      R +  +   ++  + +  + K +  
Sbjct: 295 RQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSV 354

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK--LWSFL--FSDFVEQKYFLPE 535
               E  +               ++    ++ + E +   +   L      +  K     
Sbjct: 355 KEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIA 414

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            IH+ L +               +             D+ +   +   L +++  +  +K
Sbjct: 415 AIHKDLEDTE------------ANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKK 462

Query: 596 EEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMIEG 640
           +E++ +   +  +  AE +         E   Q+ +  + +A++ G
Sbjct: 463 DELQSERNYLWREENAEQQALAAKREDLEKKQQLLRAATGKAILNG 508


>gi|7243103|dbj|BAA92599.1| KIAA1361 protein [Homo sapiens]
          Length = 1005

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 53/158 (33%), Gaps = 25/158 (15%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              + + L + L            + + +RL E    +L    ++         +T    
Sbjct: 737 QTRQYKALRNHLLE---TTPKSEHKAVLKRLKEEQTRKLAILAEQYDHSINEMLSTQALR 793

Query: 571 IVDVRQGYQQALALYKRFRLL-----------------SRQKEEIEKQI---AQVTAKGE 610
           + + ++   Q L +  +  L                   R+  E+E+++     +  +  
Sbjct: 794 LDEAQEAECQVLKMQLQQELELLNAYQSKIKMQAEAQHDRELRELEQRVSLRRALLEQKI 853

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            E+   L +   E    + + +++E  IE F   S RL
Sbjct: 854 EEEMLALQNERTERIRSLLERQARE--IEAFDSESMRL 889


>gi|58269916|ref|XP_572114.1| ER to Golgi transport-related protein [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|58269918|ref|XP_572115.1| ER to Golgi transport-related protein [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134113603|ref|XP_774536.1| hypothetical protein CNBG0320 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257176|gb|EAL19889.1| hypothetical protein CNBG0320 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57228350|gb|AAW44807.1| ER to Golgi transport-related protein, putative [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|57228351|gb|AAW44808.1| ER to Golgi transport-related protein, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 650

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/211 (11%), Positives = 69/211 (32%), Gaps = 15/211 (7%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
           K +  H    ++  + A+ + ++        S   +     K    E  L      + A+
Sbjct: 45  KSLERHLFEAKHQLERAKAKIERRDETIKKLSRTQQPSTHSKAGDLERKLEDMTDQYSAL 104

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557
             +   ++ +++  N +LQ+    L     +  +   +     L +R   + L   D   
Sbjct: 105 KIKYQDQIENLKLQNVKLQEKLDIL-----QSSHLSSQNELDSLRKR-HTQTLVDFDALR 158

Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA------ 611
               L            R   ++ +        + R+ EE+++   +   K E       
Sbjct: 159 MLLSLEETKAADQKDHDRAFERERIKWEGERSRMERRIEELKESKERSDKKREELKLEVG 218

Query: 612 ---EKTAILISILHEVHIQIHQIESQEAMIE 639
              +   + +  +  +  ++ Q+++    +E
Sbjct: 219 ELKDHANLSLKQIKALKEEVKQMKAANDSLE 249


>gi|328353786|emb|CCA40183.1| Huntingtin-interacting protein 1 [Pichia pastoris CBS 7435]
          Length = 1045

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 73/225 (32%), Gaps = 23/225 (10%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
               + ++ R+ +L +  +     + R      ++ ++    +  + S+    +      
Sbjct: 371 DQLQRQVQGRVGELERDLLILRGQFDRDQLMLRQYDERVKALETELSSTTQNAQQQLGAK 430

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                          +L    ++ A  +   + L KL+S L     E    L +    +L
Sbjct: 431 E-------------ELLGNIQEQAAQWKSKYDSLAKLYSQL---REEHLNLLSKFKTAQL 474

Query: 542 CERGFGELL---KQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSRQKEE 597
                 E +   ++++R ++   +  A         R   +++          L  +  E
Sbjct: 475 KASSAREAIDKREKIERDLKAKNIELADLIRERDRARLDLERSKSDKNSETERLEARLRE 534

Query: 598 IEKQIAQVTAKGEAEKTAILIS---ILHEVHIQIHQIESQEAMIE 639
            E ++A +     +E  + L      + E+  Q+      E+  E
Sbjct: 535 QETKLADIEKLHSSELKSFLSQHNKEIEELQNQLQASSLSESANE 579


>gi|307191190|gb|EFN74887.1| TATA element modulatory factor [Camponotus floridanus]
          Length = 2376

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 85/250 (34%), Gaps = 29/250 (11%)

Query: 388  RETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQAIRDRLQQLFQKYITEHSGY 446
            R +     +   E+ E+   L+     +  Q+L+     + +R + ++      ++    
Sbjct: 845  RLSSQEMSSINAEKDEIIKELREEGEKLSKQQLQHSNIIKKLRVKEKETDATIKSQKEQI 904

Query: 447  GRYWKKNARHRDQKGPSQRLMQSSLVKGK-LSKKPSLREAALLLTLINHPAILQEQYQEL 505
                 +  R +      + + +S +     L+ K   +E  +L              ++L
Sbjct: 905  EEQNTELERLKRSLYAKEEVERSQIEAVHTLTAKTKKQEKEILTL-----------QEKL 953

Query: 506  ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565
             +  +     ++                  ++     +     + ++L   V +AG    
Sbjct: 954  DNTVHKMEAYKR-------------SLDAAKVELTETKETLLAVEEELKEAVNNAGESCQ 1000

Query: 566  TTEANIVDVRQGYQQALALY-KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
               A + D++  Y+QA   + KR   L  +  E+ K++ +       E +  +      +
Sbjct: 1001 LF-AQVEDLKLKYRQAEEAHVKREEFLKHENSELLKRL-EAAEARSEELSESVSIATKPL 1058

Query: 625  HIQIHQIESQ 634
              Q+ Q+++ 
Sbjct: 1059 LRQLEQLQAS 1068


>gi|307104908|gb|EFN53159.1| hypothetical protein CHLNCDRAFT_136937 [Chlorella variabilis]
          Length = 2390

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 527  VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
             +Q     + +  R  E  F E  KQL    ++   +    + +     +   +  AL  
Sbjct: 1175 KKQSVADGKLVLARQREAQFKEASKQLKVLQQELLTFVKDAQVHRQRREEAEHRCEALEA 1234

Query: 587  RFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQE 635
            R   L +Q +++ +Q+A    + E  A K A L   L E  + + Q+E+Q+
Sbjct: 1235 RCLALEQQAQQLGEQLATEEGEREVVATKQAALQGQLAEAQLSVAQLEAQQ 1285


>gi|302809932|ref|XP_002986658.1| hypothetical protein SELMODRAFT_425588 [Selaginella moellendorffii]
 gi|300145546|gb|EFJ12221.1| hypothetical protein SELMODRAFT_425588 [Selaginella moellendorffii]
          Length = 1508

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 69/256 (26%), Gaps = 13/256 (5%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ-AIRDRLQQL 435
            ++L   D          +        +     +      K    R  Y +  +  +  + 
Sbjct: 925  QALEERDSQVHARKGLENQLEEMRELKEAREGEVREMEEKLATARKSYEECVVARKSAEG 984

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
                +    G      +       +   +        +   S      +A L        
Sbjct: 985  KVVEVEAELGRLNEELRKMAKSKAEAEEKSRRIDERAQLDRSVAVERLQAELQRLTDQMD 1044

Query: 496  AILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFGELLKQLD 554
            A   E+    +    + +EL+           E ++     E       R   E ++++ 
Sbjct: 1045 ATCDEKEHLASQALIEASELRAEKLEWEDARTELEERLEVAEAQADSLNREHEETVREVL 1104

Query: 555  RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
               R   +          ++ +   +   L    R L+ +K  +E QI ++  +      
Sbjct: 1105 STSRKREMEV------TSELEKSAARIAQLEASARTLAAEKAALESQIQKLERENS---- 1154

Query: 615  AILISILHEVHIQIHQ 630
              L +   E+  Q+ Q
Sbjct: 1155 -ELRAKYIEISDQLEQ 1169


>gi|289614375|emb|CBI58885.1| unnamed protein product [Sordaria macrospora]
          Length = 719

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 42/131 (32%), Gaps = 9/131 (6%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEI--HQRLCERG-----FGELLKQLDRQVRDAGLWSA 565
           ++ + L   +      Q+  +  +I     L E         +   ++  +        A
Sbjct: 69  DDARHLIESIQQQCARQEKQIQAQIREIAHLKEEIAAFSTVSQDSTKILSEKLALTREVA 128

Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHE 623
             +  I  ++        +      L RQ   +E ++A      E   +K    +    E
Sbjct: 129 VLKPEIEHLKSQLSHQKDVLAEKLALERQLNTLEVELANEKRAAEKAAQKQERYVKEEEE 188

Query: 624 VHIQIHQIESQ 634
           +  QI ++E +
Sbjct: 189 LRKQIRELEKE 199


>gi|253575720|ref|ZP_04853055.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844763|gb|EES72776.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 198

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 50/120 (41%), Gaps = 3/120 (2%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
             L+KL   L    V ++    + + + +    FGE+++ ++    +  +         +
Sbjct: 81  EWLEKLIGDLRGHAVVKRIRDRQILVENI---LFGEVIRLVEISGMEHRVIFQKGPIVDM 137

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
                   + A  +R   L ++ +   +++ +   +G+AE +      L ++ +++ Q+E
Sbjct: 138 AQMAEMFASEAAEERLAQLQKELDTELERLFEAIQQGDAEASEACKERLRKLRMELMQLE 197


>gi|159130356|gb|EDP55469.1| filament-forming protein (Tpr/p270), putative [Aspergillus
           fumigatus A1163]
          Length = 2009

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 2/121 (1%)

Query: 518 LWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           L   L     + K        + +        EL K   +++ D+      T   I    
Sbjct: 503 LRQQLRDLSAQIKVLVMEVAVLKEGETTYDRDELEKIARKEIDDSSAELNPTGRFISRHL 562

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             ++    L ++   L R   E+  ++    A+ +          L E+ I++     + 
Sbjct: 563 TTFKDLHELQEQNVTLRRMLRELGDKMEGAEAREKDAVRQQEQEELKELRIRVQTYRDEI 622

Query: 636 A 636
           A
Sbjct: 623 A 623


>gi|148678485|gb|EDL10432.1| mCG18455 [Mus musculus]
          Length = 1965

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/95 (10%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 543  ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
            E    +   +++  ++++       +  I D     ++          L R K+ +E+ +
Sbjct: 1762 EADLAQCQAEVENSIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTV 1821

Query: 603  AQVTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              +  + +  +   L      + ++  ++ ++ES+
Sbjct: 1822 KDLQHRLDEAEQLALKGGKKQIQKLEARVRELESE 1856


>gi|126308731|ref|XP_001371505.1| PREDICTED: similar to developmental myosin heavy chain neonatal
            [Monodelphis domestica]
          Length = 1934

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 70/216 (32%), Gaps = 11/216 (5%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             I+ +++    +   + +   R   +  R+        +  Q  L    L  +  L+E  
Sbjct: 1612 RIKKKMEGDLNEMEIQLNHANRQATEAIRNYRNTQVLLKDTQIHLDDA-LRGQEDLKEQ- 1669

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERG 545
             L  +     +LQ + +EL          +K+    L       +    +       ++ 
Sbjct: 1670 -LAMVERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKK 1728

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQ 601
                + QL  +V +    S   E                 K+ +     L R K+ +E+ 
Sbjct: 1729 LETDVSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQT 1788

Query: 602  IAQVTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
            +  +  + +  +   L      + ++  ++ ++E +
Sbjct: 1789 VKDLQHRLDEAEQLALKGGKKQIQKLESRVRELEGE 1824


>gi|145484348|ref|XP_001428184.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395268|emb|CAK60786.1| unnamed protein product [Paramecium tetraurelia]
          Length = 800

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
           + +F    E    + E+           E LK+L        L     +    ++R+  Q
Sbjct: 389 AEIFRLKEENDRLMREK-QGLSQPVNSEEKLKELHEFKEKNNLLQQEKDKFEQEMREKEQ 447

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ-EAMI 638
           QA    +  + L +  +E E+ I Q     E +K         ++   I Q + + EA+I
Sbjct: 448 QAEQERQARQRLEQLLKEKEQMIVQGGKGSEDDK-----KKYKKIRQTIEQQKKEHEALI 502


>gi|18491169|gb|AAL69487.1| unknown protein [Arabidopsis thaliana]
          Length = 510

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 48/121 (39%), Gaps = 9/121 (7%)

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578
            + L +   +      E+  + L E+   + +++L  + +         +    +     
Sbjct: 217 HNELVAQVEKDINASFEK--ELLREKEIVDAVEKLAEEAKSELARLRVEK--EEETLALE 272

Query: 579 QQALALYKRFRLLSRQKEEIEKQIA-----QVTAKGEAEKTAILISILHEVHIQIHQIES 633
           ++  ++      L+R + E+E+Q+      +     E E+   L   + + + +I ++++
Sbjct: 273 RERTSIETEMEALARIRNELEEQLQSLASNKAEMSYEKERFDRLQKQVEDENQEILRLQN 332

Query: 634 Q 634
           +
Sbjct: 333 E 333


>gi|28703810|gb|AAH47253.1| LOC398083 protein [Xenopus laevis]
 gi|83405830|gb|AAI10972.1| Unknown (protein for IMAGE:4058308) [Xenopus laevis]
 gi|124481743|gb|AAI33185.1| Unknown (protein for IMAGE:4175361) [Xenopus laevis]
          Length = 1250

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 91/284 (32%), Gaps = 42/284 (14%)

Query: 359  PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
                         EK+ ++     ++    E E       +++ ELE  L +  + ++++
Sbjct: 868  VSEMENVQMMLQQEKMQLQEQLQAEIELCAEAEEMRARLANKKQELEEILHDLESRVEEE 927

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            + R    Q  + ++QQ   +   +        +K    +       + ++  ++  +   
Sbjct: 928  EERCQILQTEKKKMQQNIVELEEQLEEEEAARQKLQLEKVTAEAKMKKLEEDVLVLEDQN 987

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
                +E  L      +   + E    L +    +  L KL +                  
Sbjct: 988  TKLGKEKKL------YEERIAEFTTNLTEEEEKSKSLAKLKNK----------------- 1024

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
                      ++  L+ ++R         E      R+    +  L+ +   L  Q  E+
Sbjct: 1025 -------HETMISDLEERLRREEKQRQELEKTR---RKLEGDSTDLHDQIAELQAQIAEL 1074

Query: 599  EKQIAQVTAKGEAE---------KTAILISILHEVHIQIHQIES 633
            + Q+A+   + +A          +  + +  + E+  QI +++ 
Sbjct: 1075 KLQLAKKEEELQAALARAEEEAAQKNLALKKIRELESQIGELQE 1118


>gi|10798804|dbj|BAB16440.1| sperm antigen [Homo sapiens]
          Length = 759

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 89/280 (31%), Gaps = 45/280 (16%)

Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447
           R+ E  +    +    L+   +     ++ ++          +  +   +    E+    
Sbjct: 465 RKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKMENGSLK 524

Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507
            + +   +   +    ++  +S   + +   K +  E  LL   ++   + QE  +   +
Sbjct: 525 SHLQGEKQKATEASAVEQTAES--CEVQEMLKVARAEKDLLE--LSCNELRQELLKANGE 580

Query: 508 IRYDNNELQKL------WSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQ 556
           I++ ++ L K+         +     EQ      ++ ++  E     +   E + +L+ Q
Sbjct: 581 IKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQ 640

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA- 615
           V             I ++     +          L  QK ++E+Q+  +T + + E    
Sbjct: 641 VEQHRAVKLHNNQLISELESSVIK----------LEEQKSDLERQLKTLTKQMKEETEEW 690

Query: 616 -------------------ILISILHEVHIQIHQIESQEA 636
                                   L  V  ++ + E + A
Sbjct: 691 RRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNA 730


>gi|45554605|ref|NP_996387.1| moesin, isoform J [Drosophila melanogaster]
 gi|2828520|sp|P46150|MOEH_DROME RecName: Full=Moesin/ezrin/radixin homolog 1;
           Short=Ezrin-moesin-radixin 1; AltName: Full=Moesin;
           Short=dMoesin; AltName: Full=Protein D17
 gi|1871222|gb|AAB48934.1| moesin [Drosophila melanogaster]
 gi|45446877|gb|AAS65299.1| moesin, isoform J [Drosophila melanogaster]
          Length = 578

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEK 600
            E+   +  ++  +    A   +   +    D  +  Q+ +   +R           +E+
Sbjct: 312 EEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEE 371

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Q+ Q+ A  +  +       L  +  ++ + ++ EA+
Sbjct: 372 QLKQLQAAKDELELRQ--KELQAMLQRLEEAKNMEAV 406


>gi|45439370|ref|NP_065842.1| serine/threonine-protein kinase TAO1 isoform 1 [Homo sapiens]
 gi|114668371|ref|XP_001138940.1| PREDICTED: serine/threonine-protein kinase TAO1 isoform 3 [Pan
           troglodytes]
 gi|332848195|ref|XP_003315600.1| PREDICTED: serine/threonine-protein kinase TAO1 [Pan troglodytes]
 gi|74759012|sp|Q7L7X3|TAOK1_HUMAN RecName: Full=Serine/threonine-protein kinase TAO1; AltName:
           Full=Kinase from chicken homolog B; Short=hKFC-B;
           AltName: Full=STE20-like kinase PSK2; AltName:
           Full=Thousand and one amino acid protein 1
 gi|16118411|gb|AAL12217.1| serine/threonine kinase TAO1 [Homo sapiens]
 gi|119571573|gb|EAW51188.1| TAO kinase 1, isoform CRA_a [Homo sapiens]
 gi|119571574|gb|EAW51189.1| TAO kinase 1, isoform CRA_a [Homo sapiens]
 gi|119571575|gb|EAW51190.1| TAO kinase 1, isoform CRA_a [Homo sapiens]
 gi|124376680|gb|AAI33040.1| TAO kinase 1 [Homo sapiens]
 gi|168278865|dbj|BAG11312.1| serine/threonine-protein kinase TAO1 [synthetic construct]
          Length = 1001

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 53/158 (33%), Gaps = 25/158 (15%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              + + L + L            + + +RL E    +L    ++         +T    
Sbjct: 733 QTRQYKALRNHLLE---TTPKSEHKAVLKRLKEEQTRKLAILAEQYDHSINEMLSTQALR 789

Query: 571 IVDVRQGYQQALALYKRFRLL-----------------SRQKEEIEKQI---AQVTAKGE 610
           + + ++   Q L +  +  L                   R+  E+E+++     +  +  
Sbjct: 790 LDEAQEAECQVLKMQLQQELELLNAYQSKIKMQAEAQHDRELRELEQRVSLRRALLEQKI 849

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            E+   L +   E    + + +++E  IE F   S RL
Sbjct: 850 EEEMLALQNERTERIRSLLERQARE--IEAFDSESMRL 885


>gi|327463121|gb|EGF09442.1| cell division protein Smc [Streptococcus sanguinis SK1]
 gi|327474732|gb|EGF20137.1| cell division protein Smc [Streptococcus sanguinis SK408]
          Length = 1178

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 44/373 (11%), Positives = 106/373 (28%), Gaps = 59/373 (15%)

Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374
             I    D +        +  D+    +  G   +   +      +       +      
Sbjct: 102 RHIYRSGDSEYKIDGKKVRLRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIF 161

Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK---------------DQK 419
              +  L     ++ETE++   T D    LE  +    + +K               D +
Sbjct: 162 EEAAGVLKYKTRRKETESKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQ 221

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R  Y   +  +L    +K            ++ A +  ++   +   Q+   K     +
Sbjct: 222 RRELYLDVLVAQLTANKEKLTQSEEDLRNIQQELAAYYSKRDELEVENQTLKAKRHELNQ 281

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDN-----------NELQKLWSFL--FSDF 526
               +     +L+    ++ +  +++   + ++             L  L   L      
Sbjct: 282 TLSDDQ---ASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLAQIESN 338

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           +E K     +I  +L +       + +     +   +S   +  I  +R+   Q + L +
Sbjct: 339 IEDKQAELSQIAAKLSDNE-----QSIAALEAELADFSDDPDQLIEHLRE---QYVKLMQ 390

Query: 587 RFRLLSRQKEEIEKQIA--------------------QVTAKGEAEKTAILISILHEVHI 626
               LS     +E Q+A                    + +   E      L      +  
Sbjct: 391 EEANLSNDLTSLESQLASELKLAESKKADYAKLQADLEASQIQEQAGLEELEIARQALKG 450

Query: 627 QIHQIESQEAMIE 639
            +   +SQ  ++E
Sbjct: 451 LLADYQSQIQLVE 463



 Score = 37.9 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 94/282 (33%), Gaps = 12/282 (4%)

Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
             +  +  ++V  L        +  E+      +  A      +  + +   +  R+  +
Sbjct: 221 QRRELYLDVLVAQLTANKEKLTQSEEDLRNIQQELAAYYSKRDELEVENQTLKAKRHELN 280

Query: 426 QAIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           Q + D       L +L      +         + A  R +       +   L + + + +
Sbjct: 281 QTLSDDQASLLELTRLISDLERQIDLSKLESSQAATSRRENEERLAALSEKLAQIESNIE 340

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE--QKYFLPEEI 537
               E + +   ++         +      + ++   +L   L   +V+  Q+       
Sbjct: 341 DKQAELSQIAAKLSDNEQSIAALEA-ELADFSDDP-DQLIEHLREQYVKLMQEEANLSND 398

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
              L  +     LK  + +  D     A  EA+ +  + G ++     +  + L    + 
Sbjct: 399 LTSLESQ-LASELKLAESKKADYAKLQADLEASQIQEQAGLEELEIARQALKGLLADYQS 457

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             + + ++ A  + ++T  +  +L ++  +  +  S EA+++
Sbjct: 458 QIQLVEKLEADYKHQQT-KMFELLDDLKNKQARSNSLEAILK 498


>gi|297672064|ref|XP_002814134.1| PREDICTED: zinc finger protein DZIP1L-like [Pongo abelii]
          Length = 767

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/200 (10%), Positives = 64/200 (32%), Gaps = 15/200 (7%)

Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494
           L       H+G     K+  + +  +   + L           +     E       +  
Sbjct: 181 LRGHIQRRHAGVAEGGKQKKQEQPVEEVLEELRAKLKWTQGELEAQREAERQ---RQLQE 237

Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554
             ++    +E+   +  +   ++ W+ L+ +  + K    +E      +     L ++L 
Sbjct: 238 AELI--HQREIEAKKEFDKWKEQEWTKLYGEIDKLKKLFWDEFKNVAKQN--STLEEKLR 293

Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
                + + S        +  +  +QA  L         QK E ++++ ++         
Sbjct: 294 ALQSHSVMESNLGSLRDEESEEWLRQARELQALREKTEIQKTEWKRKVKELH-------- 345

Query: 615 AILISILHEVHIQIHQIESQ 634
              ++   E+  +  ++++ 
Sbjct: 346 EEHMAEKRELQEENQRLQAS 365


>gi|281346518|gb|EFB22102.1| hypothetical protein PANDA_017340 [Ailuropoda melanoleuca]
          Length = 890

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 22/197 (11%)

Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPA 496
             + +   +   +      +       + S L KG+    PS REA L   L  +     
Sbjct: 518 RKKMAKIDKEKDRFEHELQKYRSFYGDLDSPLPKGEAGGPPSTREAELKLRLRLVEEEAN 577

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
           IL  +  EL        E + L + L     +        +      R   E L +L + 
Sbjct: 578 ILGRKIVELEV------ENRGLKAELDDLRGDDFNGSANPLM-----REQSESLSELRQH 626

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
           ++     +     N+ D+ +  ++  A   +++         +    +     ++ KT  
Sbjct: 627 LQLVEDETELLRRNVADLEEQNKRITAELNKYKY--------KSGGHESARHHDSAKTEA 678

Query: 617 LISILHEVHIQIHQIES 633
           L   L    +QI+++  
Sbjct: 679 LQEELKAARLQINELSG 695


>gi|297487484|ref|XP_002696266.1| PREDICTED: kinesin family member 19 [Bos taurus]
 gi|296476062|gb|DAA18177.1| kinesin family member 19 [Bos taurus]
          Length = 999

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 79/229 (34%), Gaps = 14/229 (6%)

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
            Y+  I D   ++ +         GR   +    R      Q  +Q    +G+ +    L
Sbjct: 363 QYTNIIADLRGEIQRLKRKIEERGGRSLDRAQLGRGDIRHIQAEVQLHSGQGEQAAMEHL 422

Query: 483 REAALLLTLINHPAILQEQYQELAD-IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
           RE  L+ T        +   +     +  + +    L +   + +  +K     +  +  
Sbjct: 423 RE-QLISTFQEQMDTRRRLLELENRGMELETDTSHHLLT--IASWKHEKSRRALKWREER 479

Query: 542 CERGF--GELLKQLDRQVRDAGLWSATTEANIVDVRQGY--------QQALALYKRFRLL 591
            +  F   +  K  D       +       +  +             +Q LAL +R R L
Sbjct: 480 RKESFTKDDTRKDSDTGDNQPDIEEPAEVVSARESIATLMTEQKKLRKQKLALEQRCREL 539

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
             +   +E+ + +  +  +  +   L+  +HE+ ++  +++SQ  + +G
Sbjct: 540 RARGRRLEETLPRRVSSEQQREALGLLCRVHELELEKAEMQSQALLRDG 588


>gi|166364641|ref|YP_001656914.1| hypothetical protein MAE_19000 [Microcystis aeruginosa NIES-843]
 gi|166087014|dbj|BAG01722.1| hypothetical protein MAE_19000 [Microcystis aeruginosa NIES-843]
          Length = 276

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 50/141 (35%), Gaps = 9/141 (6%)

Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
           +L      + +       +  +           +   L ++      +   R+     L 
Sbjct: 6   DLYLDHLTHADTVITAEIVEHESQSTDETDWAALSSHLRQQNQELQAEIWRREQALGELR 65

Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-----ILI 618
           S   E +    R+       + ++   L  +K+++++ + ++    +AE+        L 
Sbjct: 66  SQLAEQH----RRWQSCDTLIQQQNEELQYEKQQLQRALGEIEQYRQAEQRQPMIIANLT 121

Query: 619 SILHEVHIQIHQIESQEAMIE 639
           + L     Q+ ++E + A+I+
Sbjct: 122 AELTRTRQQLARLERECALIQ 142


>gi|149693029|emb|CAL80780.1| jakmip1 [Homo sapiens]
          Length = 569

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 83/271 (30%), Gaps = 11/271 (4%)

Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422
           ++       +    +          R+ E+R+    DER EL    +     +K    + 
Sbjct: 277 VQDQHMDERDVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKRSRETEVQLKPLVEKN 336

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
                  + L Q  Q+   +     R   +       +   +R    SL    L++    
Sbjct: 337 KRMNKKNEDLLQSIQRMEEKIKNLTRENVEMKEKLSAQASLKRHT--SLNDLSLTRDEQE 394

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E   L  L        EQ   + D+  +   L +            K  + E       
Sbjct: 395 IEFLRLQVL--------EQQHVIDDLSLERERLLRSKRHRGKSLKPPKKHVVETFFGFDE 446

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQ 601
           E    E L +            AT E ++ D     +  L         L    E++ +Q
Sbjct: 447 ESVDSETLSETSYNTDRTDRTPATPEEDLDDATAREEADLRFCQLTREDLQAAVEKVRRQ 506

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           I + + + +++     + +L +   +I ++E
Sbjct: 507 ILRQSREFDSQILRERMELLQQAQQRIRELE 537


>gi|205830428|ref|NP_001034634.2| myosin heavy chain IIa [Mus musculus]
 gi|148678481|gb|EDL10428.1| mCG140437, isoform CRA_d [Mus musculus]
          Length = 1942

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 82/272 (30%), Gaps = 15/272 (5%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    +D     + E       +    +E         I+ +       + +  
Sbjct: 1568 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQSTLDAEIRSRNDAIRIKKKMEG 1627

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490
             L ++ +  +   +       +N R+        +L     ++G+   K        L  
Sbjct: 1628 DLNEM-EIQLNHSNRMAAEALRNYRNTQGILKDTQLHLDDALRGQEDLKEQ------LAM 1680

Query: 491  LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +     +LQ + +EL          +K+    L       +    +       ++     
Sbjct: 1681 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETD 1740

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605
            + Q+  ++ D    +   E                 K+ +     L R K+ +E+ +  +
Sbjct: 1741 ISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDL 1800

Query: 606  TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
              + +  +   L      + ++  ++ ++E +
Sbjct: 1801 QLRLDEAEQLALKGGKKQIQKLEARVRELEGE 1832


>gi|146324518|ref|XP_751189.2| filament-forming protein (Tpr/p270) [Aspergillus fumigatus Af293]
 gi|129557286|gb|EAL89151.2| filament-forming protein (Tpr/p270), putative [Aspergillus
           fumigatus Af293]
          Length = 2009

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 2/121 (1%)

Query: 518 LWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           L   L     + K        + +        EL K   +++ D+      T   I    
Sbjct: 503 LRQQLRDLSAQIKVLVMEVAVLKEGETTYDRDELEKIARKEIDDSSAELNPTGRFISRHL 562

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
             ++    L ++   L R   E+  ++    A+ +          L E+ I++     + 
Sbjct: 563 TTFKDLHELQEQNVTLRRMLRELGDKMEGAEAREKDAVRQQEQEELKELRIRVQTYRDEI 622

Query: 636 A 636
           A
Sbjct: 623 A 623


>gi|119596642|gb|EAW76236.1| myosin, heavy polypeptide 7B, cardiac muscle, beta, isoform CRA_a
            [Homo sapiens]
          Length = 1975

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 70/216 (32%), Gaps = 17/216 (7%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             ++ +++        +     R   +            +  Q+   + +        +A 
Sbjct: 1620 RLKKKMEGDLNDLELQLGHATRQATEAQAATRLMQAQLKEEQAGRDEEQRLAAELHEQAQ 1679

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
             L       ++L  + +EL          ++L         EQ+     E    L  +  
Sbjct: 1680 ALE---RRASLLAAELEELRAALEQGERSRRL--------AEQELLEATERLNLLHSQNT 1728

Query: 547  GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            G LL Q  +   D    S        ++++    +  L +  + L +   E++ ++ +  
Sbjct: 1729 G-LLNQKKKLEADLAQLSGEAAMMAEELKKEQDTSAHLERMKKTLEQTVRELQARLEEAE 1787

Query: 607  AK---GEAEKTAILISILHEVHIQI--HQIESQEAM 637
                 G  ++   L + + E+  ++   Q +  EA+
Sbjct: 1788 QAALRGGKKQVQKLEAKVRELEAELDAEQKKHAEAL 1823


>gi|118086218|ref|XP_418856.2| PREDICTED: similar to trans-Golgi p230 [Gallus gallus]
          Length = 2202

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 58/140 (41%), Gaps = 9/140 (6%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            I+++  +EL +++    + +KLW+       +Q     E++ ++  E+    +LK+ + 
Sbjct: 632 DIVEKHKEELENVK---QQQEKLWTEKLQILQQQHVIEIEKMREK-QEQEIDTILKEKET 687

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQAL-----ALYKRFRLLSRQKEEIEKQIAQVTAKGE 610
             R             +DV+Q   + L        K  + L ++  E++ ++ +   + E
Sbjct: 688 VFRTHIEEMNEKTLEKLDVKQTELETLSSELSEALKVRQDLEQELSELKSKVGEAKQEFE 747

Query: 611 AEKTAILISILHEVHIQIHQ 630
            +  A       EV I + +
Sbjct: 748 GKLEAERNQHKEEVEIMLKE 767


>gi|124513454|ref|XP_001350083.1| reticulocyte binding protein 2 homolog A [Plasmodium falciparum 3D7]
 gi|74842797|sp|Q8IDX6|RBP2A_PLAF7 RecName: Full=Reticulocyte-binding protein 2 homolog a
 gi|23615500|emb|CAD52492.1| reticulocyte binding protein 2 homolog A [Plasmodium falciparum 3D7]
 gi|33413772|gb|AAN39443.1| normocyte binding protein 2a [Plasmodium falciparum]
          Length = 3130

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/103 (12%), Positives = 36/103 (34%), Gaps = 4/103 (3%)

Query: 539  QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            + L  +    L ++   Q++         +  +       +Q     ++   L RQ++E 
Sbjct: 2751 EELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQER 2810

Query: 599  EKQIAQVTAKGEAEKTAILISILHE----VHIQIHQIESQEAM 637
             ++  Q   + E E        L +       +  +++ +E +
Sbjct: 2811 LEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEEL 2853


>gi|32567054|ref|NP_505684.2| hypothetical protein F22E12.1 [Caenorhabditis elegans]
 gi|24817319|emb|CAA94892.2| C. elegans protein F22E12.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
 gi|24817567|emb|CAA16311.2| C. elegans protein F22E12.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 763

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 61/551 (11%), Positives = 142/551 (25%), Gaps = 62/551 (11%)

Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE--KI 183
            FF+   +   ++                      + P    +    + +  F E   + 
Sbjct: 53  RFFYGGCEGNENRFDSLEECSSQCHYQVPTNRDRCFQPHDPGNCYADIERWFFDENKKQC 112

Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRG-----QVIAFGGRTLSKGESVKYLNSPE 238
           + +     G NS   Y      LI    +  G     +            ES+   N+P 
Sbjct: 113 VCSWWSGCGGNSNIYYSYNHCMLICGEYAEHGPGIDEKYWGRQMNRSMSAESLHVFNNPT 172

Query: 239 TILFHKGKNLYN----FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294
                  +  Y        +          +     +  + +   + D           V
Sbjct: 173 ESFHQYSEEPYPVQVPLENSYYDSHPRRYGNSDNWDNKLMTINISHRDDGPSYFHAAPAV 232

Query: 295 VSSLGTALTEYQLR-------LLWKLSPRIVLCFDGD----DPGLRAAYKAIDLVLCHLI 343
              + +   +             +   PR +   D D         +A +   +     +
Sbjct: 233 TVPMFSRAAQSFKTQADGLTIHRYDSEPRPMQVLDQDVNWQIQEQASAQQNGFMKRRFKM 292

Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403
              ++   ++  G  P S    Y      ++   + P+      RE +            
Sbjct: 293 QKKKLPPRMIHLGTRPASQSNSYRIQLDSEINEHNRPVT-YQVVREQDAHVQQHNQISQS 351

Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463
           L+   +     I+D   R Y+ Q                +               Q  PS
Sbjct: 352 LQNEAEETQRRIQDTMRRNYFEQ--------------ARYQRPPVQMPPPPPPPQQNSPS 397

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTL-INHPAILQEQYQELADIRYDNNELQKLWSFL 522
                   +  +        E AL   L    P  +      +  +   N +   +    
Sbjct: 398 VNENYHPELVNQFKSHLDEHEKALRRKLEAQFPDHIITLIPHIETV--RNPDGSNVVRQR 455

Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGEL-----LKQLDRQVRDAGLWSATTEANIVDVRQG 577
                   Y     I + +      +L     ++Q+ + +        T E  I  +   
Sbjct: 456 IKWTA---YPKGARIPEHVPVPPVAQLPPLPPMQQVIQPILTTQAVYTTEEPYIPLITTV 512

Query: 578 YQQALALYKRFRLLSRQKEEI--------------EKQIAQVTAKGEAEKTAILISILHE 623
               ++  K   +  + KE++              +K+I ++ A  + E+  +++     
Sbjct: 513 PTHEISRLKHEEMQRKYKEDLEKRQEEQKRQQEEHKKKIQELKAAQQRERERMMVEREKA 572

Query: 624 VHIQIHQIESQ 634
            + +  + E++
Sbjct: 573 ENDRRLKYENE 583


>gi|6682319|emb|CAB64662.1| myosin heavy chain [Mytilus galloprovincialis]
          Length = 1705

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 73/213 (34%), Gaps = 10/213 (4%)

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
            DR+ +L  +  +  S   +        +         ++++  + + +   S R A  L 
Sbjct: 1475 DRVNELSAEVQSAQSSKRKLEGDIQAMQSDLDEMNNEVRNADERARRANDDSARLADELR 1534

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549
            +   H   +++  + L        +LQ       +  ++    +  ++ QR+      EL
Sbjct: 1535 SEQEHSQQIEKFRKSLES---QVKDLQVRLEEAEAQALKGGKKMIAKLEQRV-----REL 1586

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
              +LD + R               +++   QA    K    L+   E++  ++     + 
Sbjct: 1587 EGELDSEQRRHAETQKHMRKADRRLKEIAFQADEDRKNQENLNEMIEKLNNKLKTYKRQV 1646

Query: 610  EAEKTAI--LISILHEVHIQIHQIESQEAMIEG 640
            E  +      ++   +V  ++   E +    EG
Sbjct: 1647 EEAEEIAAINLAKYRKVQQELEDAEERADSAEG 1679


>gi|4808811|gb|AAD29949.1| myosin heavy chain IIb [Homo sapiens]
          Length = 1939

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/277 (9%), Positives = 82/277 (29%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +   +   +    +       +      ELE   K     ++D +      
Sbjct: 1352 EEEQEAKAELQRGMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1411

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1412 NSKCASLEKTKQRLQNEVEDLMIDVERSNAACIALDKKQRNFDKVLAEWKQKYEETQAEL 1471

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+  S L     E         
Sbjct: 1472 EASQKESRSLSTELFKVKNAYEESLDHLETLKRENKNLQQEISDLTEQIAEGGKH----- 1526

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  + ++ +     +       R   +  +  +
Sbjct: 1527 ------------IHELEKVKKQLDHEKSELQTSLEEAEASLEHEEGKILR---IQLELNQ 1571

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1572 VKSEIDRKIAEKDEELDQLKRNHLRVVESMQSTLDAE 1608


>gi|4885399|ref|NP_005436.1| structural maintenance of chromosomes protein 3 [Homo sapiens]
 gi|158517902|ref|NP_113771.2| structural maintenance of chromosomes protein 3 [Rattus norvegicus]
 gi|197101619|ref|NP_001126947.1| structural maintenance of chromosomes protein 3 [Pongo abelii]
 gi|149689674|ref|XP_001496837.1| PREDICTED: similar to Structural maintenance of chromosomes protein
           3 (Chondroitin sulfate proteoglycan 6)
           (Chromosome-associated polypeptide) (hCAP) (Bamacan)
           (Basement membrane-associated chondroitin proteoglycan)
           [Equus caballus]
 gi|194042017|ref|XP_001926614.1| PREDICTED: structural maintenance of chromosomes protein 3 [Sus
           scrofa]
 gi|291404811|ref|XP_002718785.1| PREDICTED: structural maintenance of chromosomes 3 [Oryctolagus
           cuniculus]
 gi|296221205|ref|XP_002756637.1| PREDICTED: structural maintenance of chromosomes protein 3
           [Callithrix jacchus]
 gi|332835297|ref|XP_508031.3| PREDICTED: structural maintenance of chromosomes protein 3 [Pan
           troglodytes]
 gi|29337005|sp|Q9UQE7|SMC3_HUMAN RecName: Full=Structural maintenance of chromosomes protein 3;
           Short=SMC protein 3; Short=SMC-3; AltName: Full=Basement
           membrane-associated chondroitin proteoglycan;
           Short=Bamacan; AltName: Full=Chondroitin sulfate
           proteoglycan 6; AltName: Full=Chromosome-associated
           polypeptide; Short=hCAP
 gi|71153768|sp|Q5R4K5|SMC3_PONAB RecName: Full=Structural maintenance of chromosomes protein 3;
           Short=SMC protein 3; Short=SMC-3; AltName:
           Full=Chondroitin sulfate proteoglycan 6
 gi|3089368|gb|AAC14893.1| chromosome-associated polypeptide [Homo sapiens]
 gi|55733256|emb|CAH93311.1| hypothetical protein [Pongo abelii]
 gi|55959087|emb|CAI16576.1| structural maintenance of chromosomes 3 [Homo sapiens]
 gi|119569942|gb|EAW49557.1| chondroitin sulfate proteoglycan 6 (bamacan), isoform CRA_a [Homo
           sapiens]
 gi|149040399|gb|EDL94437.1| chondroitin sulfate proteoglycan 6, isoform CRA_b [Rattus
           norvegicus]
 gi|157279396|gb|AAI53264.1| SMC3 protein [Bos taurus]
 gi|158260565|dbj|BAF82460.1| unnamed protein product [Homo sapiens]
 gi|306921253|dbj|BAJ17706.1| structural maintenance of chromosomes 3 [synthetic construct]
          Length = 1217

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 36/346 (10%), Positives = 93/346 (26%), Gaps = 24/346 (6%)

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T     ++  L K     +   + +   L    K   +                    D 
Sbjct: 182 TEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDE 241

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            S  R        +L        D +   E + R   T     + E             +
Sbjct: 242 LSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQL-------SAE 294

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    Q  +  L+    +     +   R      R +  +   ++  + +  + K +  
Sbjct: 295 RQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSV 354

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK--LWSFL--FSDFVEQKYFLPE 535
               E  +               ++    ++ + E +   +   L      +  K     
Sbjct: 355 KEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIA 414

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            IH+ L +               +             D+ +   +   L +++  +  +K
Sbjct: 415 AIHKDLEDTE------------ANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKK 462

Query: 596 EEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMIEG 640
           +E++ +   +  +  AE +         E   Q+ +  + +A++ G
Sbjct: 463 DELQSERNYLWREENAEQQALAAKREDLEKKQQLLRAATGKAILNG 508


>gi|307189805|gb|EFN74077.1| Myosin-XVIIIa [Camponotus floridanus]
          Length = 667

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 89/251 (35%), Gaps = 31/251 (12%)

Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466
            + +    +++Q  R    +  + +     Q  + +        ++ AR ++     +  
Sbjct: 145 EMHDLRLLLEEQTARNNLLEKKQRKFDSETQNLMNDLRQEKAQRERLAREKEIAIAEKFT 204

Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526
           ++ +L   +L     L+E  L           +   QEL ++ +     +++     +  
Sbjct: 205 VEQNLSDARLE--IELKEERL-----------RTLTQELEELTFGGKTEEEVAQLKKAKH 251

Query: 527 V-------EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR---- 575
                   +++         +L E+    L   +++Q ++        +  + DVR    
Sbjct: 252 ELEKRTKDQEEELDDLAGQVQLLEQAKLRLEMSIEQQRKEMRKEMQQRDEELEDVRGNAH 311

Query: 576 ----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---LISILHEVHIQI 628
                   Q    ++   +L R+K E+E+++  +  +  A++ A    L  +  ++    
Sbjct: 312 KKVKALESQLENEHEERTILLREKHELERRLVALEEQDRADRAAEAETLQRLKRDLKRTK 371

Query: 629 HQIESQEAMIE 639
             +   + M+E
Sbjct: 372 ALLRDAQTMLE 382


>gi|301771622|ref|XP_002921226.1| PREDICTED: myosin-3-like isoform 1 [Ailuropoda melanoleuca]
          Length = 1940

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 86/271 (31%), Gaps = 22/271 (8%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
              +  I   +   D   ++   N        ++ L+  +++    I+           I+
Sbjct: 1568 QVKSEIDRKIAEKDEEIEQLKRNYQRTVETMQSALDAEVRSRNEAIR-----------IK 1616

Query: 430  DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489
             +++    +   + S   R   +  +H        +  Q  L    L  +  L+E   L 
Sbjct: 1617 KKMEGDLNEIEIQLSHANRQAAETVKHLRSVQGQLKDTQLHLDDA-LRGQEDLKEQ--LA 1673

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
             +     +LQ + +EL          +KL    L       +    +       ++    
Sbjct: 1674 MVERRANLLQAEVEELRASLEQTERARKLAEQELLDANERVQLLHTQNTSLIHTKKKLET 1733

Query: 549  LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQ 604
             L QL  +V DA   +   E                 K+ +     L R K+ +E+ +  
Sbjct: 1734 DLTQLQSEVEDASRDARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKD 1793

Query: 605  VTAKGEAEKTAIL---ISILHEVHIQIHQIE 632
            +  + +  +   L      + ++  +I ++E
Sbjct: 1794 LQHRLDEAEQLALKGGKKQIQKLETRIRELE 1824


>gi|301611451|ref|XP_002935254.1| PREDICTED: myosin-4-like [Xenopus (Silurana) tropicalis]
          Length = 1938

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/273 (10%), Positives = 86/273 (31%), Gaps = 17/273 (6%)

Query: 371  FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430
             +  + +    VD     + E       + +  ++       + I+ +       + +  
Sbjct: 1564 IQLELNQIKSEVDRKIAEKDEEIEQLKRNSQRAIDTLQSTLDSEIRSRNDALRLKKKMEG 1623

Query: 431  RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ-RLMQSSLVKGKLSKKPSLREAALLL 489
             L +L  +    +       K+    + Q   +Q +L  +   +  L ++ ++ E     
Sbjct: 1624 DLNELEIQLSHANRQAAEAQKQLRNVQAQYKDAQLQLDDALRGQDDLKEQVAVIER---- 1679

Query: 490  TLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                +     E  +  A +       +K+    L       +    +       ++    
Sbjct: 1680 ---RNNLQQAEIEENRAALE-QTERSRKIAEQELLDASERVQLLHSQNTSLIGSKKKLEA 1735

Query: 549  LLKQLDRQVRDAGLWS-ATTEANIVDVRQGYQQALALYKRFR---LLSRQKEEIEKQIAQ 604
             + QL  +  +A   +    E     +      A  L K       L R K+ +E+ +  
Sbjct: 1736 DISQLQSEAEEAVQEARNAEEKAKKAITDAALMAEELKKEQDTSAHLERMKKNLEQTVKD 1795

Query: 605  VTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
            +  + +  +   +      L ++  ++ ++E++
Sbjct: 1796 LQNRLDEAEQLAMKGGKKQLQKLETRVRELENE 1828


>gi|297459506|ref|XP_002700601.1| PREDICTED: myosin, heavy polypeptide 6, cardiac muscle, alpha-like
            [Bos taurus]
          Length = 1938

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 70/216 (32%), Gaps = 11/216 (5%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             ++ +++    +   + S   R   +  +H        +  Q  L    +     L+E  
Sbjct: 1614 RVKKKMEGDLNEMEIQLSQANRIASEAQKHLKVAQAHLKDTQIQLDDA-VRANDDLKEN- 1671

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERG 545
             +  +     +LQ + +EL  +       +KL    L       +    +       ++ 
Sbjct: 1672 -IAIVERRNNLLQAELEELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKK 1730

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQ 601
                L  L  +V +A       E                 K+ +     L R K+ +E+ 
Sbjct: 1731 MESDLTHLQSEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQT 1790

Query: 602  IAQVTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
            I  +  + +  +   L      L ++  ++ ++E++
Sbjct: 1791 IKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENE 1826


>gi|297479068|ref|XP_002690549.1| PREDICTED: myosin, heavy polypeptide 6, cardiac muscle, alpha-like
            [Bos taurus]
 gi|296483729|gb|DAA25844.1| myosin, heavy polypeptide 6, cardiac muscle, alpha-like [Bos taurus]
          Length = 1927

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 70/216 (32%), Gaps = 11/216 (5%)

Query: 427  AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
             ++ +++    +   + S   R   +  +H        +  Q  L    +     L+E  
Sbjct: 1603 RVKKKMEGDLNEMEIQLSQANRIASEAQKHLKVAQAHLKDTQIQLDDA-VRANDDLKEN- 1660

Query: 487  LLLTLINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERG 545
             +  +     +LQ + +EL  +       +KL    L       +    +       ++ 
Sbjct: 1661 -IAIVERRNNLLQAELEELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKK 1719

Query: 546  FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQ 601
                L  L  +V +A       E                 K+ +     L R K+ +E+ 
Sbjct: 1720 MESDLTHLQSEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQT 1779

Query: 602  IAQVTAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634
            I  +  + +  +   L      L ++  ++ ++E++
Sbjct: 1780 IKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENE 1815


>gi|295695316|ref|YP_003588554.1| ATP-dependent protease La [Bacillus tusciae DSM 2912]
 gi|295410918|gb|ADG05410.1| ATP-dependent protease La [Bacillus tusciae DSM 2912]
          Length = 781

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 59/165 (35%), Gaps = 5/165 (3%)

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
           G+ + +   R  ++L     + ++ ++   E      D  E  +L   + S     K   
Sbjct: 118 GEPTPEIEARMRSVLHQFEQYVSLSKKITHETYLAVLDIEEPGRLADVIASHLP-LKIKD 176

Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
            + I +        E L +L    R+           +    +  Q+   L ++ + + +
Sbjct: 177 KQTILEAFDVEERLEQLLRLLSDEREVLELERKINQRVRRQMEKTQKEYFLREQMKAIQK 236

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAM 637
           +  E E ++A+V    E      +   + E +  +I ++   E +
Sbjct: 237 ELGEKEGRLAEVEQLREQLAALEMPGEIRERIEKEIDRL---EKI 278


>gi|293417188|ref|ZP_06659815.1| hypothetical protein ECDG_04341 [Escherichia coli B185]
 gi|291431219|gb|EFF04212.1| hypothetical protein ECDG_04341 [Escherichia coli B185]
          Length = 802

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 53/144 (36%), Gaps = 10/144 (6%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555
            I +   +   ++ +D  EL  ++  +    ++      E I     +        +L++
Sbjct: 614 QIKESHKESATNVTFDYKELASIFEGVEEKQIKALSNQLEHIKSFKTDYD-----SRLNK 668

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
             RD   +S+    N  D+ + Y++  +  K +  L R+ +E+   I +  +  +     
Sbjct: 669 YARDFHYFSSAFAINREDLLKNYEEIRSSIKDYDDLLREIKELT--IKRDKSVDDKRTLF 726

Query: 616 ILISIL---HEVHIQIHQIESQEA 636
                     EV  ++  +  + A
Sbjct: 727 DNKRDKWNSQEVQDEVAALNQKIA 750


>gi|301111203|ref|XP_002904681.1| Crinkler (CRN) family protein [Phytophthora infestans T30-4]
 gi|262095998|gb|EEY54050.1| Crinkler (CRN) family protein [Phytophthora infestans T30-4]
          Length = 731

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 55/153 (35%), Gaps = 7/153 (4%)

Query: 488 LLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546
           +  L+  P       + ++ +      E  ++++ +     E +    E   +R  E   
Sbjct: 138 IHMLVKVPEGAGGDQELVSLLSMSIQEENARMFNKV---AEENREKNRERDRKRAEENRE 194

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
               +   R   +        E N    R+  ++     ++     R+  E  +++A+  
Sbjct: 195 ENRERDRKRAEENRERDRKRAEENRERDRKRAEENRERDRKQAKEFRRLAEETRKLAEEN 254

Query: 607 AKGE---AEKTAILISILHEVHIQIHQIESQEA 636
            + +   AE+T  L   + ++  +  +++ + A
Sbjct: 255 RERDRKRAEETRKLAEEIRKLAEEKRELDRKRA 287


>gi|261403240|ref|YP_003247464.1| SMC domain protein [Methanocaldococcus vulcanius M7]
 gi|261370233|gb|ACX72982.1| SMC domain protein [Methanocaldococcus vulcanius M7]
          Length = 1001

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 79/229 (34%), Gaps = 25/229 (10%)

Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482
              +  + +L++L  +   + S          + +++     ++ ++     +  K    
Sbjct: 167 EILKEYKSKLERLEGELSNKKSFEQELRDMEKKLQEKTDELSKINETIKKMKEELKDAED 226

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
             + +    + +   + +  +    +  +  +L  L             +  E I + + 
Sbjct: 227 ELSNIEKKKLQYEKFISKLEERKTALELNKQKLNTLK------------YDFEVITRSIK 274

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
              F E  K+   +           E  + ++++ Y+  + L  +  +L    +++E+ I
Sbjct: 275 ---FLEEHKEEYEKYMSVVNRIEEIENKLKELKESYENYVKLVNKKDILKEDIKKLEEFI 331

Query: 603 AQVTAKGEAEKTAILI----------SILHEVHIQIHQIESQEAMIEGF 641
            +V   G+ E     I            + ++  ++  + S+   IEG+
Sbjct: 332 DKVNYNGDLEDIEEEIDKIKNKIEKIERIKDLIEELRTLHSEVEKIEGY 380


>gi|221055267|ref|XP_002258772.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193808842|emb|CAQ39544.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 774

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 45/141 (31%), Gaps = 24/141 (17%)

Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560
                AD   D+ +L +L   +                    +      +K++ +  +  
Sbjct: 282 HDDVEADAYLDHKDLGQLLEKILEHLNVN------------LKEAMNIYVKEIKKLNKAN 329

Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA------------QVTAK 608
              S   E  + +  +  Q+   L KR   +  +K E+ K+I             +   +
Sbjct: 330 ETLSRKLETAVENNDEQAQEIRDLNKRISKIGEEKTEMNKRIEGYEFTIHKSKKLKNEEQ 389

Query: 609 GEAEKTAILISILHEVHIQIH 629
            + E+   L   +  +  +++
Sbjct: 390 NDKEENGALDMEIKNLKRELN 410


>gi|190347639|gb|EDK39950.2| hypothetical protein PGUG_04048 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 203

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602
           +R   E + + +R   D    +    A   +  +         K+   L+++ ++++++I
Sbjct: 30  QRELEEQINEFERVNSDLKAQNNQLVATNKEKDEIIGGDT---KKMNELTQKIKQLKEKI 86

Query: 603 AQVTAKGEAEKTAIL--ISILHEVHIQIHQIESQEAMIE 639
           A++    +      L  +    E  +++++  + + + E
Sbjct: 87  AELEKDNDEAHQQELQQLREHMEQQLELNRQRTTKKIDE 125


>gi|218438669|ref|YP_002376998.1| PadR family transcripitonal regulator [Cyanothece sp. PCC 7424]
 gi|218171397|gb|ACK70130.1| transcriptional regulator, PadR-like family [Cyanothece sp. PCC
           7424]
          Length = 195

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 23/159 (14%)

Query: 485 AALLLTLINHP----AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             LL  L   P     +++E        R  +     ++  L     E  Y   E+I  +
Sbjct: 52  FILLSLLSERPRHGYELIKELEDRYGGFRRLSP--GSVYPTL-QLLEEGGYLTSEQIEGK 108

Query: 541 ----LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596
               + E G   L +++++          T E   +D    Y Q +        LS+   
Sbjct: 109 RVYTITESGKQLLAQRIEQ----------TEEETPLD--DYYNQVINQPSELIELSKALS 156

Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
           ++   + Q+   G  ++   +   + E+  +I+++ +++
Sbjct: 157 QLNDAVKQMANSGNLQQIDRVRERIIELKREIYRMLAEQ 195


>gi|171681878|ref|XP_001905882.1| hypothetical protein [Podospora anserina S mat+]
 gi|170940898|emb|CAP66548.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1083

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 39/345 (11%), Positives = 92/345 (26%), Gaps = 28/345 (8%)

Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360
           A  + +   L      +V   +        A +A      + I   +       +  D  
Sbjct: 606 AFFKRKFEELEAKHAELVQAHEQAVASHAQALEAAKAERDNAINALKAKEEEHQQALDAL 665

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                      +    ++    +       E+ S                       + L
Sbjct: 666 RASHAEELEGAKSATRQAQEAGEEEIHSLKESHSKQI--------------------EIL 705

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +     ++   L+ L   +  E          + + R ++   +   + +    +  ++ 
Sbjct: 706 KEESKASLAKALEDLEAGHAAELDAARSAGDVSLQTRMEQFEREVEAKHAEELEQALQEV 765

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             + A  +  L       Q   +EL     D+   +     L     E+   L  +  + 
Sbjct: 766 RAKHAEEVAKLTGDLQAAQAMTEELEAGLKDSEGQRAEAKALIDYREEEMAKLQAKFAEL 825

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL--SRQKEEI 598
             E    E+  +            A     +  V   +   LA  K         Q + +
Sbjct: 826 --EASVKEIQAKNAELEAKNAESVAKHNLELEAVNARHDSLLAEIKAKYAADSEAQLKGL 883

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM--IEGF 641
           EK+         A +     +   ++  ++ ++  Q AM  +E F
Sbjct: 884 EKEQQAKADAEAAAEALRAEN--VKLQQEVDEMGGQLAMEKMEKF 926


>gi|168057917|ref|XP_001780958.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667592|gb|EDQ54218.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 288

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 516 QKLWSFLFSDFVEQK-YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
           Q +   +      ++     E   Q   ++   ++  QL+R+  +A   +   E   +  
Sbjct: 147 QSIRKKVHEALHSEEFKKEIESRIQEGRKKIIDDIAAQLEREKEEALAEARRNEEEKMRE 206

Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           ++  +Q L   +      R+ EE +++ A+  A+ E E+   L ++  +    + + + +
Sbjct: 207 KEQLEQMLEENR------RKIEEAQRRAAEEQARKEEERYRELETLQRQKEEALRRRKLE 260

Query: 635 E 635
           E
Sbjct: 261 E 261


>gi|133903949|ref|NP_494821.3| abnormal DYe Filling family member (dyf-14) [Caenorhabditis
           elegans]
          Length = 1884

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 39/352 (11%), Positives = 104/352 (29%), Gaps = 38/352 (10%)

Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390
           A      +             +    +D          +  E  +       +     + 
Sbjct: 282 ATLMRKAIRHAEQKNLDQKEQMKREKDDVLDETLRQLNSVTENYMKSEEKANERQRDLKR 341

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKL----RYYYSQAIRDRLQQLFQKYITEHSGY 446
           +        E+ +    +   ++ +  +      R      +  ++++L      E    
Sbjct: 342 KEDECRKLREQNDELSDILEQLSKMAHEMAGGRGRNETPMDVARKMRKLLTTKNGEIDES 401

Query: 447 GRYWKKNARHRDQKGP-----SQRLMQSSLVKGKLSKKPSLREAALLLT---------LI 492
               K+  + RD+         +R       + K S   S RE  L             I
Sbjct: 402 REAAKQAEKERDRAKKDLEKEEKRRKDDREAERKRSSVYSQREHDLKKLDDELRKASEKI 461

Query: 493 NHPAILQEQYQELA-----DIRYDNNELQKLWSFLF----SDFVEQKYFLPEEIHQRLCE 543
            +    +E  ++L       +   + + ++    L      +  E++    E +  +  E
Sbjct: 462 RNLEEQRESQEKLTISVQNSLNEAHRQHKQFIEELMIRHREELKEREDSHEEALRSKDTE 521

Query: 544 RG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
               F +   + ++  R++     T  +   DV            R  +L  +++E++K+
Sbjct: 522 ERSRFEKERSEREKIRRESDELRETQRSLKGDVAAMKTDLDDKTLRLDMLETERDELKKK 581

Query: 602 IAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644
           +     + +           K   +     E+  ++ + ++    +EG GK+
Sbjct: 582 LETEREQADQRDLEIAECRAKLDEMAEKEAELRKELAEFQAIITAMEGEGKL 633


>gi|73965007|ref|XP_540443.2| PREDICTED: similar to Envoplakin (210 kDa paraneoplastic pemphigus
            antigen) (p210) (210 kDa cornified envelope precursor
            protein) [Canis familiaris]
          Length = 2029

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/288 (10%), Positives = 85/288 (29%), Gaps = 15/288 (5%)

Query: 357  EDP-----DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411
            +DP        +R   + A ++       + ++  +     R         +  +  +  
Sbjct: 1319 KDPVLEKEAERLRQEVREATQRRRATEDVVSELQNRYLLLERRRPEERVVVQEVVVTQKD 1378

Query: 412  INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK----KNARHRDQKGPSQRLM 467
                +D             R +QL ++     +G          +  R +      +   
Sbjct: 1379 PKLREDHGRLSQSLDEEAGRRRQLEREVQQLRAGVQEKESLLSFQEDRTKKLAVERELRQ 1438

Query: 468  QSSLVKGKLSKKPSLREAALLLTLIN---HPAILQEQYQELADIRYDNNELQKLWSFLFS 524
             +  ++    + P+++E  ++  ++     P + +       D+  +   + +L     +
Sbjct: 1439 LTLRIQELEQRPPAVQEKIIMEEVVKLEKDPDLEKSTEALRQDLEQEKTRVTELHRECKN 1498

Query: 525  DFVEQKYFLPEEIHQRLCERGFGELLKQ--LDRQVRDAGLWSATTEANIVDVRQGYQQAL 582
              V+       +  ++   +    + K   L+ +   A               +  +   
Sbjct: 1499 LQVQIDVLQTTKSQEKTIYKEVIRVEKDRVLEGERSRAWEALNRERGARQSREEEVRHLR 1558

Query: 583  ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
                    L R +   E ++ +  A+ + E    L   L E+  +  Q
Sbjct: 1559 QRLDGAEALRRTRAREEAELQRSRAQADQE-HRQLRQELRELERRKQQ 1605


>gi|76801009|ref|YP_326017.1| transducer protein [Natronomonas pharaonis DSM 2160]
 gi|76556874|emb|CAI48448.1| homolog 2 to transducer protein [Natronomonas pharaonis DSM 2160]
          Length = 220

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 65/203 (32%), Gaps = 9/203 (4%)

Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506
            R   +      ++  S        +K     +  + E AL          +        
Sbjct: 15  QRETIQQTEAALEEAASIPRDVGDALKSGTDVQRKVNERALDAV----RQSVHTSLDAAE 70

Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566
            +  + + +  L   +   F   K    E +     +  + E  +  D    +A    + 
Sbjct: 71  SVTGNTDPVADLRDAVDETFDTLKEQQAEALDA--VDEEYDEFGESYDEFSEEAIENLSA 128

Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626
               +V++ +G +  L        L  Q +E++ Q      +   + +    + L ++  
Sbjct: 129 QLDTLVELNEGVEDQLGET--LDELLDQVDELQSQFDASAEEAREQLSESTEAALDQLEA 186

Query: 627 QIHQIESQ-EAMIEGFGKMSGRL 648
           Q+  +  Q EA  E F ++  R+
Sbjct: 187 QLDGLADQFEAQAERFEELEDRI 209


>gi|11498637|ref|NP_069865.1| chromosome segregation protein [Archaeoglobus fulgidus DSM 4304]
 gi|18201999|sp|O29230|RAD50_ARCFU RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|2649562|gb|AAB90211.1| purine NTPase, putative [Archaeoglobus fulgidus DSM 4304]
          Length = 886

 Score = 38.3 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 98/280 (35%), Gaps = 24/280 (8%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D +           L  + +   D       E            + +      + I+D +
Sbjct: 80  DDYTISRKSNGESILTGKEIVEGDSNITEWVERHLCPAHVFTGAIYVRQGEIDSIIRDDE 139

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            R    + I  R++     +    +      ++  R ++     +++ +    K    ++
Sbjct: 140 SRERIIRQI-TRIEDYENAWKNLGAVIRMLEREKERLKEFLSQEEQIKRQKEEKKAEIER 198

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
            S    ++        ++ ++  +E+ ++     EL++  S L S   ++   L E    
Sbjct: 199 ISEEIKSI-------ESLREKLSEEVRNLESRLKELEEHKSRLESLRKQESSVLQEV--- 248

Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
               RG  E L++L++Q+++        E    +V++   +A    +R+ +L +   EI 
Sbjct: 249 ----RGLEEKLRELEKQLKEVVERIEDLEKKAKEVKELKPKA----ERYSILEKLLSEIN 300

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           + +  V  +        L      +  Q+ + E   + +E
Sbjct: 301 QALRDVEKREGD-----LTREAAGIQAQLKKAEEDNSKLE 335


>gi|326921263|ref|XP_003206881.1| PREDICTED: dynactin subunit 1-like [Meleagris gallopavo]
          Length = 831

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 75/242 (30%), Gaps = 28/242 (11%)

Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472
             ++++ LR    + + ++L+ L  K   + +      K   +    +    ++ +    
Sbjct: 275 KKVEEENLRSQ-VRDLEEKLETLKIKRNEDKAKLKELEKYKIQLEQVQEWKSKMQEQQAD 333

Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDF 526
             K  K+        L     +   + +    +     D        + L   +    + 
Sbjct: 334 LQKRLKEAKKEAKDALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVDSLKEK 393

Query: 527 VEQKYFLPEEIHQRLCERGFG---------ELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           VE      E +   + E+G           +L +Q  R           + +   +  + 
Sbjct: 394 VEYLTMDLEILKHEIEEKGSDGAASSYQVKQLEEQNARLKEALVRMRDLSASEKQEHVKL 453

Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
            +Q          L +Q+E++++++ Q     +            E+  Q+      E M
Sbjct: 454 QKQMEKKNTELESLRQQREKLQEEVKQAEKTVD------------ELKEQVDAALGAEEM 501

Query: 638 IE 639
           +E
Sbjct: 502 VE 503


>gi|306833248|ref|ZP_07466377.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus bovis ATCC 700338]
 gi|304424615|gb|EFM27752.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Streptococcus bovis ATCC 700338]
          Length = 639

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 18/160 (11%)

Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
           NH  I  ++  E A I +        ++     ++ + +     +       +    L +
Sbjct: 472 NHLDIDSKEVLEDALIDFDGTLLFVSHDRYFINRVATKVLEISEKGSTLYLGDYDYYLEK 531

Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603
           +   E +++L  +       +   +A   D    YQ   A  K  R L+R+  EIE Q+ 
Sbjct: 532 KAELEEMERLKAEEAQEKTVAIVEKAPAND----YQAQKANQKELRKLTRRIAEIENQLE 587

Query: 604 QVTAKGEAEKTAILIS----ILHEVHIQIHQI-ESQEAMI 638
           ++ A  EA   A+L +     L ++  ++  + E QE +I
Sbjct: 588 EIEACEEAINQAMLATNDAVELVDLQKELDDLTEQQENLI 627


>gi|296225505|ref|XP_002758520.1| PREDICTED: sarcolemmal membrane-associated protein isoform 1
           [Callithrix jacchus]
          Length = 807

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 78/222 (35%), Gaps = 7/222 (3%)

Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            ++ + L+    +      + + + ++T+     +  K+N     +   S  L  S    
Sbjct: 378 QVRLEHLQEKTLKEYSSLEKLIVEGHLTKAVEETKLSKENQTKAKESDLSDTLSPSKEKS 437

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV-----E 528
              +    + E  L   L     +  +     ++I     E+Q L   L          +
Sbjct: 438 SDDTTDAQMDEQDLNEPLAKVSLLKDDLQGAQSEIE-AKQEIQHLRKELIEAQELARTSK 496

Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588
           QK F  + + +    + +   +++  +Q++           NI ++R+   + +   +  
Sbjct: 497 QKCFELQALLEE-ERKAYRNQVEESTKQIQVLQAQLQRLHINIENLREEKDREITSTRDE 555

Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            L ++ +  +  Q A+  A       A L   L +V  ++ +
Sbjct: 556 LLSAQDEILLLHQAAEKAASERDTDIASLQEELKKVRAELER 597


>gi|291405455|ref|XP_002718957.1| PREDICTED: TAO kinase 2-like [Oryctolagus cuniculus]
          Length = 1001

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 53/158 (33%), Gaps = 25/158 (15%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              + + L + L            + + +RL E    +L    ++         +T    
Sbjct: 733 QTRQYKALRNHLLE---TTPKSEHKAVLKRLKEEQTRKLAILAEQYDHSINEMLSTQALR 789

Query: 571 IVDVRQGYQQALALYKRFRLL-----------------SRQKEEIEKQI---AQVTAKGE 610
           + + ++   Q L +  +  L                   R+  E+E+++     +  +  
Sbjct: 790 LDEAQEAECQVLKMQLQQELELLNAYQSKIKMQAEAQHDRELRELEQRVSLRRALLEQKI 849

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            E+   L +   E    + + +++E  IE F   S RL
Sbjct: 850 EEEMLALQNERTERIRSLLERQARE--IEAFDSESMRL 885


>gi|303320669|ref|XP_003070334.1| hypothetical protein CPC735_035250 [Coccidioides posadasii C735
           delta SOWgp]
 gi|240110020|gb|EER28189.1| hypothetical protein CPC735_035250 [Coccidioides posadasii C735
           delta SOWgp]
 gi|320041441|gb|EFW23374.1| hypothetical protein CPSG_01273 [Coccidioides posadasii str.
           Silveira]
          Length = 548

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/266 (10%), Positives = 83/266 (31%), Gaps = 13/266 (4%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
             +   + + +     D   +           ++    E   +N +  +           
Sbjct: 134 EVSEMRRTLEKIQSKHDQEMETLQNKLQETHNEKNNA-ETQFRNLLGKV------NTIKS 186

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + +RL+   ++     S       +N   + +       ++S   +G+   K       
Sbjct: 187 QLGERLKADAEELSQARSQIEELEGQNETLKSEVEAKSAQIESLEKEGEQRSKELSSLRN 246

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCER 544
              T ++    L+E+ + L    Y   E ++    +        ++  + E +  ++ + 
Sbjct: 247 --RTNLSQQNWLKEREELLEQESYLRAEFEEAKQAMHNWEILAMEERSVREGLGDKVVD- 303

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              E L  L          S   E  I  +++  Q+     K+      +  +++ +  +
Sbjct: 304 -LEEQLNALKIDYERVSKESRDQENTIEGLQKALQEIQRARKQELRELVESSDLQAEDLR 362

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQ 630
              +   +  A   + L +  +++ +
Sbjct: 363 KKVQTAEKSAAQATAELEKTKMELER 388


>gi|241955148|ref|XP_002420295.1| conserved hypothetical protein [Candida dubliniensis CD36]
 gi|223643636|emb|CAX42519.1| conserved hypothetical protein [Candida dubliniensis CD36]
          Length = 1039

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 85/264 (32%), Gaps = 17/264 (6%)

Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA--IRDRLQQLFQKYITEHSGYGR 448
           +       + + +     +     + D  L  +YS    + D   + F+K          
Sbjct: 39  QVYHSYPEEPKPQTSPPRRKLFRPLADSNLASHYSHDSGLFDDTVEDFEKVSPIRPQLSP 98

Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---------AALLLTLINHPAILQ 499
             ++N R  D+             +        LR            L+ +L N PA  +
Sbjct: 99  ITQRNRRSPDRHAFITDDSGGIAARQSEETIKELRSENYGWKIKYKELIRSLENMPANER 158

Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
           E  +E  +++     L +    L S   E +      I      +    +++QL+ Q+ +
Sbjct: 159 EVRKENIELKEKLATLHQHVQQLESQIAELQNNKENIISNSNDSQEKSNIIQQLNHQIYE 218

Query: 560 AGLWSATTEANIVDVRQGYQQ----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615
                ++ +     +++   +      AL      L+ +  E+E  +     + +     
Sbjct: 219 LQKSLSSEQKAENKLKESQLENEEIIQALKSERNELTSKVSELEDYMKHSEVEFDVVMKQ 278

Query: 616 --ILISILHEVHIQIHQIESQEAM 637
                + +HE+   I ++   EA 
Sbjct: 279 NDEFQARIHELEAAIDKLHRTEAA 302


>gi|221484681|gb|EEE22975.1| conserved hypothetical protein [Toxoplasma gondii GT1]
 gi|221504865|gb|EEE30530.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 446

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 73/281 (25%), Gaps = 9/281 (3%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH-LKNCINHIKDQKL 420
             RC G      +  +       L++  T        +  + +         + +     
Sbjct: 18  HRRCSGAAGASSVKKKRETAALSLFQWATALSEQAAGESASRVHKENAAPFESSLLQPFF 77

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                ++   RL       +       +   +++        + RL  S       +   
Sbjct: 78  PPQVFRSFSKRLSVSKASEVDSMPPLKKARNQSSSSPRLARAASRLGTSKAAHVAKAGGR 137

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF---LFSDFVEQKYFLPEEI 537
             R   +    +  P  L+   +         +E  +L S    +    +     + E  
Sbjct: 138 EKRTENI--CALEQPEFLETHDEVRPQTLLSPSEESELASAESHMKGWVLSVAAAVWEVR 195

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
             RL E    EL+   DR         A       D      Q +   ++         E
Sbjct: 196 GSRLSEAYERELMNLYDRPACGTTGVRAYLNVGERDACAALHQEVLRLEQRANAE---AE 252

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638
           ++++      +   +    L + L     ++     Q A +
Sbjct: 253 LQREYLTQVHQEHVKSLQRLRTALLSRQREMRATLQQLAAV 293


>gi|195576698|ref|XP_002078212.1| GD23326 [Drosophila simulans]
 gi|194190221|gb|EDX03797.1| GD23326 [Drosophila simulans]
          Length = 2547

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 35/325 (10%), Positives = 96/325 (29%), Gaps = 13/325 (4%)

Query: 320 CFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESL 379
             D      +            L    +         ++   ++         +L   SL
Sbjct: 586 ILDEIAADYQTLKDESSKRGKSLDDLLQGRKAFEDSMKNMGDWLNEMETATEGELRTTSL 645

Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI------KDQKLRYYYSQAIRDRLQ 433
           P+++       +    +  + +  L   +      I       D+       + ++DR  
Sbjct: 646 PVLEEQLAHYKKLL--SDAENKGGLINDVSEQGKSILPTLSNADKLKLNDDIKNMKDRYG 703

Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLSKKPSLREAALLLTLI 492
           ++        +  G + KK    + +     + + +   K  +L++    R   +   L 
Sbjct: 704 RIKNTIDDRVNALGDHIKKYKDAKSRLAECSQFLGNIQQKLRELNRPIGSRIEDVQDLLG 763

Query: 493 NHPAILQEQYQ---ELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
            +  IL+E      ++ D++ D+  ELQ + +         +  L       L    F  
Sbjct: 764 AYEGILKELKDSKSKMGDMQMDDLPELQSILAQQDDMIKLIEDQLAHLRQLLLLREQFIA 823

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
           L+ ++   +          E +   +     +   +  + +           +  ++ ++
Sbjct: 824 LINEIIAFIMKYTDVIIDIENSPDSLEDKINKYDDVIMKIQECEGVLASANDKGQKIASE 883

Query: 609 GEAEKTAILISILHEVHIQIHQIES 633
           G A     +   L  +  Q+  +  
Sbjct: 884 GNAADKNSITEQLQSLKNQLQNLRK 908


>gi|126730018|ref|ZP_01745830.1| hypothetical protein SSE37_16608 [Sagittula stellata E-37]
 gi|126709398|gb|EBA08452.1| hypothetical protein SSE37_16608 [Sagittula stellata E-37]
          Length = 827

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 25/165 (15%)

Query: 485 AALLLTLINHPAILQEQYQELADIR-------------YDNNELQKLWSFLFSDFVEQKY 531
           A +L  ++N P  L  + ++   ++               +   +++   L+   +E + 
Sbjct: 410 AQILRAVLNRPDDLFRKQEQAEQLKQILSRIEAQAKTGMTDEAQEEITQALWDLAIELEE 469

Query: 532 FLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-- 587
              E+  QR+   +    E +K        A L     EA    +RQ  QQ      +  
Sbjct: 470 GDLEDARQRMQRAQERLEEAMKNGASDQEIAELMQELREATRDYMRQLAQQQAREGNQNQ 529

Query: 588 --------FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624
                     +     + +  +I ++  +G   +    +  L E+
Sbjct: 530 QPMDPSQMMEMTQDDIQRMMDRIQELMEEGRMAEAQEAMRQLQEM 574


>gi|126313843|ref|XP_001371685.1| PREDICTED: similar to Cingulin [Monodelphis domestica]
          Length = 906

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 89/281 (31%), Gaps = 16/281 (5%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            + +  Y + A   +        +   + E          E A+        +   +D  
Sbjct: 576 QAQLEEYKEKARRDVAGAQRQAKEWASEAEKAAGGLGQLQEEAQRLRQALQALQAERDTA 635

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
           L       +  +LQ L ++  ++        ++     ++    +  +       +L   
Sbjct: 636 LLD--KDLLAQKLQGLEKETESKKRSQDDKIRQLKNLEEKVSRLEAELDEERNTVELLTD 693

Query: 480 PSLREA----ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF-----SDFVEQK 530
              R       L   L+   +  Q+   +   +   N +L+   + L      S  + Q 
Sbjct: 694 RVNRARDQIDQLRAELLQERSSRQDLECDKISLERQNKDLKSRLASLEGFQKPSASLSQL 753

Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFR 589
            F  +E+  RL      + L  L    R            I D RQ    Q   L  R +
Sbjct: 754 EFQNQELQDRLQTEEREKTL--LQTTNRKLERRVKELSIQIDDERQHVNDQKDQLSLRVK 811

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630
            L RQ +E E++I ++ +  +       +   HEV+ Q+  
Sbjct: 812 ALKRQVDEAEEEIERLDSLRKKA--QRELEEQHEVNEQLQA 850


>gi|110611903|ref|NP_060003.2| myosin-4 [Homo sapiens]
 gi|224471840|sp|Q9Y623|MYH4_HUMAN RecName: Full=Myosin-4; AltName: Full=Myosin heavy chain 2b;
            Short=MyHC-2b; AltName: Full=Myosin heavy chain 4;
            AltName: Full=Myosin heavy chain IIb; Short=MyHC-IIb;
            AltName: Full=Myosin heavy chain, skeletal muscle, fetal
 gi|162318880|gb|AAI57121.1| Myosin, heavy chain 4, skeletal muscle [synthetic construct]
 gi|162319000|gb|AAI56395.1| Myosin, heavy chain 4, skeletal muscle [synthetic construct]
          Length = 1939

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/277 (9%), Positives = 82/277 (29%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +   +   +    +       +      ELE   K     ++D +      
Sbjct: 1352 EEEQEAKAELQRGMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1411

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1412 NSKCASLEKTKQRLQNEVEDLMIDVERSNAACIALDKKQRNFDKVLAEWKQKYEETQAEL 1471

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+  S L     E         
Sbjct: 1472 EASQKESRSLSTELFKVKNAYEESLDHLETLKRENKNLQQEISDLTEQIAEGGKH----- 1526

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  + ++ +     +       R   +  +  +
Sbjct: 1527 ------------IHELEKVKKQLDHEKSELQTSLEEAEASLEHEEGKILR---IQLELNQ 1571

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1572 VKSEIDRKIAEKDEELDQLKRNHLRVVESMQSTLDAE 1608


>gi|50949556|emb|CAD38785.2| hypothetical protein [Homo sapiens]
          Length = 384

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 79/275 (28%), Gaps = 17/275 (6%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              +   +  FE  + +           E + R         +           ++ + L
Sbjct: 55  EMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVKKKVAEYTILEGKLQKKTL 114

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
                +    +L  +  +   E        ++N +          L  S     +     
Sbjct: 115 IDLEKRE--QQLASVESELQREKKELQSERQRNLQ---------ELQDSIRRAKEDCIHQ 163

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
              E   +  L           Q+L D       L+K +         +     +     
Sbjct: 164 VELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSEINL 220

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           L      EL ++L+   +    +       + ++ +  Q+      +   L +Q+EE+E+
Sbjct: 221 LTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEELEQ 277

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
              +  A  E +        L ++  +++++  QE
Sbjct: 278 MRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 312


>gi|14245698|dbj|BAB56141.1| kinesin-like protein 3 [Giardia intestinalis]
          Length = 529

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           K    +   ++L  +    L++    ++ D  +           +R+     +A  K   
Sbjct: 350 KESERKAKERQLMAKKIAALIEANKSKMVDKKVLENEERLKDAAIREARNALVAQKKEAE 409

Query: 590 LLSRQKEEIEKQIAQVTA----KGEAEKTAIL-ISILHE-VHIQIHQIESQEA 636
            L ++  E E+Q  Q+        +  +   L ++   E +  +  ++ + EA
Sbjct: 410 RLKKELIEAEQQRKQLEEQCTTALDQAQQLELRLNEYKEQLAERREELHNVEA 462


>gi|67483616|ref|XP_657028.1| myosin heavy chain [Entamoeba histolytica HM-1:IMSS]
 gi|56474266|gb|EAL51645.1| myosin heavy chain [Entamoeba histolytica HM-1:IMSS]
          Length = 2151

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 90/286 (31%), Gaps = 24/286 (8%)

Query: 354  SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413
            +   D +   R   +   +KL  E     D L     E  S  T  ++++ ++   N   
Sbjct: 1453 NENLDIEKKDRMNKEKQVKKLEGELKETKDKLNAAIAEKDSIFTAKKQSDADLEELNKTV 1512

Query: 414  HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
               D+ +    +Q    +L +  Q    E +       K+ +   +       ++S  V 
Sbjct: 1513 EEHDEVVAKLNTQ--ITKLTRDNQSAEEELNELRSKADKDKKKISELEEQVNELESRPVG 1570

Query: 474  GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
               + +  ++                +       +    ++  +L +       +     
Sbjct: 1571 TGNADENEIKIRD------------AQIADLNKALEMKGDQNNQLQATNKELKAKNNDLT 1618

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             +        +      K+L++            +     V +   +   L +  + L+ 
Sbjct: 1619 SKIEITENEMKKLENAKKRLEQ----------DKDEADKAVSEQTIKRKGLEEEVKKLTT 1668

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
            + + ++ QI   ++  + E+   L S + E+  Q+ Q  +  A  E
Sbjct: 1669 EIQALKFQINAPSSVAQEEEKQRLESDIAELKEQLEQERTTAANAE 1714



 Score = 38.3 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 24/247 (9%), Positives = 72/247 (29%), Gaps = 16/247 (6%)

Query: 390  TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449
             E  +    +    +           +D +        +R +  +  +K           
Sbjct: 1505 LEELNKTVEEHDEVVAKLNTQITKLTRDNQSAEEELNELRSKADKDKKKISELEEQVNEL 1564

Query: 450  WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
              +     +      ++  + +     + +    +   L     +  +  +     + I 
Sbjct: 1565 ESRPVGTGNADENEIKIRDAQIADLNKALEMKGDQNNQLQA--TNKELKAKNNDLTSKIE 1622

Query: 510  YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569
               NE++KL +       ++         Q +  +G  E +K+L  +++          +
Sbjct: 1623 ITENEMKKLENAKKRLEQDKDEADKAVSEQTIKRKGLEEEVKKLTTEIQALKFQINAPSS 1682

Query: 570  NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA--QVTAKGEAEKTAILISILHEVHIQ 627
               +  +              L     E+++Q+   + TA     +   + + L EV   
Sbjct: 1683 VAQEEEKQ------------RLESDIAELKEQLEQERTTAANAEAERKKIQAELDEVKFN 1730

Query: 628  IHQIESQ 634
            +  + +Q
Sbjct: 1731 LEDVTNQ 1737


>gi|324503259|gb|ADY41419.1| Lamin-1 [Ascaris suum]
          Length = 590

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLC------ERGFGELLKQLDRQVRDAGLWSATTEA 569
           ++L     S   EQ   +  E   RL       +  + + LK+ ++ ++ A      +  
Sbjct: 248 RELERTYESHLQEQLRAMRTEFDARLSENRQEIDEIYKDQLKEANKALQQATEAREESAR 307

Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
               +R   ++AL    R   L +Q  ++E Q+  V     A +     + + E+  +I 
Sbjct: 308 KRACLRDLEERALKQENRLSFLEQQIVDLESQLRFVENDTNA-RVQERDARIAELQQEID 366

Query: 630 QIESQ 634
           ++ S+
Sbjct: 367 RMLSE 371


>gi|324500207|gb|ADY40105.1| Myosin heavy chain [Ascaris suum]
          Length = 1879

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 90/287 (31%), Gaps = 20/287 (6%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
                R       E L  E L   D         +  +   +  +  +      N  K ++
Sbjct: 1138 AEKSRRDLNDDLETLRTEYLEATDKTAVSLEIQKKKDGELKELKKALEAATAANESKIEE 1197

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            LR  Y +++ D  +Q+ Q+             + A   ++   +  L     +K ++ K+
Sbjct: 1198 LRQKYLRSMEDLSEQIEQQKRLRAQADKS---RRAVEAERNEIAAELTAMQSMKAEVEKR 1254

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                E+ALL        +  E  + ++ ++       +L + +     E++         
Sbjct: 1255 RKHAESALLEMTTRLKDL--EGARTISMVQLS-KAQNELEAAVKQKEEEEQNVSALLKKI 1311

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
             L E+   E   QL  + R      +       ++ +  +           +  +++E+E
Sbjct: 1312 SLLEQQLAETHDQLQEETRSKLAMQSRVRQLEDELTESVEM-------REEVETKRKELE 1364

Query: 600  KQIA-------QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
             QI        +   K +      +  +  +    +   +   A  E
Sbjct: 1365 AQIESMRATLIETRKKADEGALQQMEELKKKAQRDLETAQKAIAEAE 1411


>gi|296198603|ref|XP_002746787.1| PREDICTED: filamin-A-interacting protein 1 isoform 3 [Callithrix
           jacchus]
          Length = 1177

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 97/364 (26%), Gaps = 22/364 (6%)

Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337
           +   DV+ + +              +    ++L  L    +L  +             +L
Sbjct: 92  QAREDVIHMLKTEKTKPEVLEAHYGSAEPEKVLRVLHRDAILAQEKSIGEDVYEKPISEL 151

Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRETENR 393
                        +L                   E    +    +    D     E E  
Sbjct: 152 DRLEEKQKETYRRMLEQLLL--AEKCHRRTVYELENEKHKHTDYMNKSDDFTNLLEQERE 209

Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453
                 E+ +     K   N  +  KLR    +     L  + ++ +       +  K  
Sbjct: 210 RLKKLLEQEKAYQARKEKENAKRLNKLRDELVKLKSFALMLVDERQMHIEQLGLQSQKVQ 269

Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQELADIRYD 511
              +  +   ++L   +    +  +K    E         H A    QE  +  A +   
Sbjct: 270 DLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDF-----EHKASRFSQEHEEMNAKLANQ 324

Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571
            +  ++L   L       +       + +  E    EL  ++ +         A  E   
Sbjct: 325 ESHNRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLR 384

Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631
             V +   +   + K       Q  E+ K++ +         +  L   + ++  ++ ++
Sbjct: 385 KRVLEMEGKDEEIMKT----ESQCRELRKKLQEEEHH-----SKELKLEVEKLQKRMSEL 435

Query: 632 ESQE 635
           E  E
Sbjct: 436 EKLE 439


>gi|281340796|gb|EFB16380.1| hypothetical protein PANDA_012325 [Ailuropoda melanoleuca]
          Length = 1458

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 85/244 (34%), Gaps = 25/244 (10%)

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-RDQKGPSQRLMQSSLVKGKLSKK 479
           +    + ++ RL++   +                R       P  ++  +   + +  + 
Sbjct: 617 KTMVEEDLQRRLEEFEDEKEQLQKVAASAASLEQRTLTVNLVPVFQVNLTLQQRDQQLEV 676

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY----FLPE 535
                  LL  L +    LQ + Q L D++   +ELQ     L  +   +         E
Sbjct: 677 LQREHLDLLRQLTSTQETLQAREQSLGDLQMRFDELQARLEELQGEAASRDDTIRFLQNE 736

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ----QALALYKRFRLL 591
           +I   +  +    + ++LDR  +     +  T   +  +RQ       Q   L +    L
Sbjct: 737 KIVLEVALQAARSVREELDRGAKRLEEGTEQTSQVLEQLRQELAVKSSQVEHLQQEAATL 796

Query: 592 SRQKEEIEKQIAQV---------TAKGEAEKTAILIS-------ILHEVHIQIHQIESQE 635
            +Q ++I++Q  Q           A  + +  + L +        L E+  ++ +++ ++
Sbjct: 797 KKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATKKRLDSELKELRQELIKLQGEK 856

Query: 636 AMIE 639
             +E
Sbjct: 857 KSVE 860


>gi|289582242|ref|YP_003480708.1| chromosome segregation protein SMC [Natrialba magadii ATCC 43099]
 gi|289531795|gb|ADD06146.1| chromosome segregation protein SMC [Natrialba magadii ATCC 43099]
          Length = 1189

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 71/244 (29%), Gaps = 39/244 (15%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
           +  A+ E   +      +         +  RDRL QL  +         R  ++     +
Sbjct: 189 EFDAKKEDAFEELEIVEERIDEAELRIEEKRDRLDQLADERRQAMR--YRRLRREKEEYE 246

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518
               +  L +               E+ L           ++  +EL + +     LQ+ 
Sbjct: 247 GYKKASELEEKRAELESAEDSVDDLESDL-----------EDLQRELDERQGKVVRLQE- 294

Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK---QLDRQVRDAGLWSATTEANIVDVR 575
                           E+++  +  +G  E L+   +++    D        EA+   + 
Sbjct: 295 --------------DLEDLNAEIERKGEDEQLRIKSEIEEIKGDISRLEDKIEASEEQIE 340

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
                    + +        EE+E ++ +               +  E+  +  + +  E
Sbjct: 341 DAESTRREAFVQIDRKQETIEELEDEMREHK--------LEKAQLKTEIQERKTKRDELE 392

Query: 636 AMIE 639
           A I+
Sbjct: 393 AEID 396



 Score = 37.2 bits (84), Expect = 10.0,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 16/159 (10%)

Query: 489 LTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGF 546
              +N  A+ L +    LA           +     ++ +        +I   +     F
Sbjct: 131 YYYLNDRAVNLSDIQDLLAQAGVTPEGYNVVMQGDVTEIINMTPHARRQIIDEIAGVAEF 190

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK---RFRLLSRQKEE------ 597
               +    ++          E  I + R    Q     +   R+R L R+KEE      
Sbjct: 191 DAKKEDAFEELEIVEERIDEAELRIEEKRDRLDQLADERRQAMRYRRLRREKEEYEGYKK 250

Query: 598 ---IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
              +E++ A++ +  ++     L S L ++  ++ + + 
Sbjct: 251 ASELEEKRAELESAEDS--VDDLESDLEDLQRELDERQG 287


>gi|255541346|ref|XP_002511737.1| conserved hypothetical protein [Ricinus communis]
 gi|223548917|gb|EEF50406.1| conserved hypothetical protein [Ricinus communis]
          Length = 900

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 99/298 (33%), Gaps = 35/298 (11%)

Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
             G  + +         +++  + E++  + +T                    + +   Y
Sbjct: 224 PEGPISLDDFRSLQRSNMELRKQLESQVVTIDTLRNEHRATSECHESEMREMKESIAKLY 283

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS--SLVKGKLSKKPSL 482
              +++    L  K            ++     D         QS     +   S+K S+
Sbjct: 284 LDQLKELQHILDIKQKELVEVNRTSAEQKHALEDLNETLTASRQSCIEANEIMKSQKASI 343

Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            E  +         + +E+ Q   + +   ++L+     + S+  E+     +   QR  
Sbjct: 344 SELEI--------QLEEERDQRREERQKAASDLKAAVQRVQSEAQEELKRQSDAASQR-- 393

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS---------- 592
                EL +++++       W +  E+    + +  Q+ +    + R L           
Sbjct: 394 ---ERELQEEINKLQEREKKWCSQVESLRPKLEEARQKLVFSDNKVRQLESQVAEEQLAS 450

Query: 593 ----RQKEEIEKQIAQVTAKGEAEKTAILISILH------EVHIQIHQIESQEAMIEG 640
               ++ EE+E +I Q+  + E+EK A   +         E++  +  +E +   ++G
Sbjct: 451 ANGRKRVEELELEIKQLRKELESEKAAREEAWAKVSALELEINAAMRDLEYERRRLKG 508


>gi|222153398|ref|YP_002562575.1| DNA repair protein [Streptococcus uberis 0140J]
 gi|222114211|emb|CAR42769.1| putative DNA repair protein [Streptococcus uberis 0140J]
          Length = 553

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 44/323 (13%), Positives = 97/323 (30%), Gaps = 45/323 (13%)

Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407
           +  +L   G D    +            V  +    +      E   +         +  
Sbjct: 76  IKSILEKNGIDVSDDLVIRRDIFANGRSVSRINGQMVTLSTLKEVGHYLVDIHGQHDQEE 135

Query: 408 LKNCIN--HIKDQKLRYYYSQAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPS 463
           L    +   I D      + Q+++ R Q LF   K I +     +  ++  R R +    
Sbjct: 136 LMRASHHQSILDAFGNDAF-QSLKRRYQSLFNDYKLIRKRVIEKQKNEQEHRERIEMLAF 194

Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE---LADIRYD--------- 511
           Q     ++   K   +   +E      L+NH  I+         L +  +          
Sbjct: 195 QLAEIEAVDLQKGEDQALNQERD---RLLNHKHIVDTLSNASTMLDNDDFSSLANLRSAM 251

Query: 512 ---------NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAG 561
                    +   + L S L   +   +    E +   L +  F    L  +++++    
Sbjct: 252 NDLLSIEDFDPNYKTLASSLTDAYYILEDVNKE-LSVVLEDLDFDASRLFDIEKRLDVIY 310

Query: 562 LWSATTEANIVDVRQGYQQALALYKRF-------RLLSRQKEEIEKQIAQVTAKGEAEKT 614
             +     ++ DV   Y      YK           L    +++EK++  V+ +   E+ 
Sbjct: 311 SLTRKYGGSVDDVLDYYSNIEKEYKLLTGNESSTNTLEIDLKKLEKELITVSEELSLERH 370

Query: 615 AI-------LISILHEVHIQIHQ 630
            +       +   L E++++   
Sbjct: 371 QLASALETIIQQELKELYMEKAA 393


>gi|195147668|ref|XP_002014801.1| GL19365 [Drosophila persimilis]
 gi|194106754|gb|EDW28797.1| GL19365 [Drosophila persimilis]
          Length = 524

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 13/138 (9%)

Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574
            ++L   L     E++    E   + L  +   E+ + L+ ++  A          I  +
Sbjct: 293 YEELNLKLKKINDEKQRLADEIKLRDLEIKNLHEMQQSLNSELFRANADQGEHLKQIAQL 352

Query: 575 RQGY--------QQALALYKRFRLLSRQKEEIEK-----QIAQVTAKGEAEKTAILISIL 621
           ++ Y        +Q + L      L    + I++     +I +       EK   L+   
Sbjct: 353 QRDYQESLGIQQEQYIKLELFENALEASMKIIKEIRNEMEITEKIKLSSEEKYNKLLDHT 412

Query: 622 HEVHIQIHQIESQEAMIE 639
            +V     Q+E Q A+++
Sbjct: 413 KQVERTAQQMEEQVALLQ 430


>gi|161520768|ref|YP_001584195.1| hypothetical protein Bmul_4222 [Burkholderia multivorans ATCC
           17616]
 gi|160344818|gb|ABX17903.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
          Length = 364

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 78/272 (28%), Gaps = 26/272 (9%)

Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN-HIKDQKLRYYYSQAI 428
           A         P  + L++   +           E    L+      I+   L     QA 
Sbjct: 61  ALLFFRFGITPTANRLYQLVRKGSMSTPTAVLGEFWAELREKSRVRIEHPDL-PADLQAA 119

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
              L        +  +       +     ++      +        +       R AALL
Sbjct: 120 AGELVATLWTRSSADAAAALDALRAEVEAERAAAKTEVAALQSELARTETALEQRTAALL 179

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
              +          QEL   R  ++  ++                   + Q      FG 
Sbjct: 180 AAQVR--------IQELEQARAADDATRRAQQAEIERLKADNAEGARALAQA--RADFGT 229

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608
            L +L      A             +R   ++AL   +R R  + +   ++K++    A+
Sbjct: 230 QLDRLRDDASRAE----------ERLRASERRALQEIERERQATAR---LQKELDATNAR 276

Query: 609 GEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
            + E+ A L   +  +  Q+   + +  ++EG
Sbjct: 277 AD-ERDARLRREIGALQAQLADSQHRCGVLEG 307


>gi|154498713|ref|ZP_02037091.1| hypothetical protein BACCAP_02704 [Bacteroides capillosus ATCC
           29799]
 gi|150272253|gb|EDM99451.1| hypothetical protein BACCAP_02704 [Bacteroides capillosus ATCC
           29799]
          Length = 943

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 7/127 (5%)

Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572
            + +KL+  L +   E    L + + ++L +     +  +L        ++    E  I 
Sbjct: 789 EDCEKLF--LCAGTSEGVSPLADSVIKKLQQNTKQHITGKLQTIDSRNLVYFRAEEDRIF 846

Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
              Q     L   K    + RQ  E+E+   Q  +    E+       L ++  Q  +  
Sbjct: 847 RWEQDMVSTLE--KELDTVKRQIREMERVSRQAQSM---EEKLEANRRLQDLERQKRKKR 901

Query: 633 SQEAMIE 639
           ++ A  E
Sbjct: 902 NELADRE 908


>gi|153832464|ref|ZP_01985131.1| chromosome partition protein MukB [Vibrio harveyi HY01]
 gi|148871259|gb|EDL70131.1| chromosome partition protein MukB [Vibrio harveyi HY01]
          Length = 1489

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 26/162 (16%)

Query: 499 QEQYQELADIRYDNNELQKLWSF----LFSDFVEQKYFLPEEIHQRLCER--GFGELLKQ 552
           +E  ++ A   +D+ ++Q+L+      + S         PE+    + ++      +L  
Sbjct: 798 EEVVEKHAKAAFDSQKMQRLYQAFNQFVASHIQVAFEADPEQALATIRDKRNQIARVLAD 857

Query: 553 LDRQVRDAGLWSATTEANIVDVRQ-----GYQQALALYKRFRLLSRQKEEI--------- 598
           LD + +        ++  +  + +        +  +L  RF  L  +  ++         
Sbjct: 858 LDAKEQQQRSELQNSKQALSSLDKLAPNMALIEDESLQARFDELEEKIAQLSEAKAFLTN 917

Query: 599 -EKQIAQVTA-----KGEAEKTAILISILHEVHIQIHQIESQ 634
             K +A++         + E+   L +       Q+  ++ Q
Sbjct: 918 HAKAVAELEKVAVALDADPEQFDALEAEYKAADEQLQDLKKQ 959


>gi|289450|gb|AAA53661.1| vimentin [Bos taurus]
          Length = 466

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
             +     +      ++    +      E + +L  ++++  L     E+ +   RQ   
Sbjct: 152 EEMRELRRQVDQLTNDKARAEVERHNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVD 211

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
            A         L R+ E ++++IA +    +AE    L + + E H+QI
Sbjct: 212 NASLARL---DLERKVESLQEEIAFLKKLHDAE-IQELQAQIQEQHVQI 256


>gi|326433499|gb|EGD79069.1| hypothetical protein PTSG_02037 [Salpingoeca sp. ATCC 50818]
          Length = 5390

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 34/342 (9%), Positives = 97/342 (28%), Gaps = 27/342 (7%)

Query: 300  TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
            +       RL+           +    G+                          R +D 
Sbjct: 4404 SKADVDTERLILMQVAETQTSGEESGEGMARVQAIAAHYQGLRKAVRERMSAAAKRRKD- 4462

Query: 360  DSFIRCYGKTAFEKLIV----ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415
                +   + A ++       +S P    L + E   R               K  +   
Sbjct: 4463 KRCTKIDTEAAQQEREELEALQSTPEFKALSREERRLRQDKIKQRAKARARQRKRVVEAE 4522

Query: 416  KDQKLRYYYSQAIRDR----LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471
            +D K +   ++ ++      L +L +                 +   +    +   +  L
Sbjct: 4523 EDAKEQVLAARMVKQLNTTELNKLQEATRAMVQATAGSEDDAEKMAAEFDERRNKARQHL 4582

Query: 472  VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531
                  +   ++E      L    A+     + +   + +  EL+     +     E   
Sbjct: 4583 SDQHKQQMNRMKERLAKTRLKKQEALTVAVSEAVEVSQLEVPELEVAPESVMEL--EAME 4640

Query: 532  FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591
               + +   L +R   + LK+L+ ++R           + ++ R           + ++L
Sbjct: 4641 KNQQRMEAELRKR-HEQELKELEGKLRKEAEEEEKRALDALEER-----------KQQVL 4688

Query: 592  SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633
              ++ ++E ++ +       ++   L+    +   Q++ + +
Sbjct: 4689 KEKRSKLEAEV-RARPDLSEQEMNRLM---KQHEQQLNTLSA 4726


>gi|301626648|ref|XP_002942499.1| PREDICTED: cell cycle progression protein 1 [Xenopus (Silurana)
           tropicalis]
          Length = 873

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/251 (10%), Positives = 84/251 (33%), Gaps = 25/251 (9%)

Query: 385 LWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444
             +   +       DE  +++  L  C    +    +    + + + L++      +   
Sbjct: 271 QIQERQKLVEKLHEDELNDMKDDLFQCHKDQESTIEQNEVVEQLTEDLEERQDMVSSLKG 330

Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504
              +  K+N   R +    Q          K ++            ++ +  + +   +E
Sbjct: 331 VMDKITKENQLLRQKHTELQLEADGLSTSLKTTEVEKKN------LVVENQHLRESLEKE 384

Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564
              +     EL+KL   + +                L E+G GE+++  +++++   +  
Sbjct: 385 EQALSSLQEELRKLREQIRN----------------LEEKGRGEIMQSENQKLKAHLIEE 428

Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEE-IEKQIAQVTAKGEAEK--TAILISIL 621
                +    ++       + +      +Q  E ++ Q+ +++ +   E+  +      +
Sbjct: 429 RQKVRSFRTQKETLLTEAQILRTELDNEKQITEALKAQLEEMSNRESPERENSMKDTQEI 488

Query: 622 HEVHIQIHQIE 632
             +  ++H +E
Sbjct: 489 QLLRQRLHDLE 499


>gi|242813041|ref|XP_002486085.1| cytoskeleton assembly control protein Sla2, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218714424|gb|EED13847.1| cytoskeleton assembly control protein Sla2, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 1038

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 79/227 (34%), Gaps = 28/227 (12%)

Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           ++  LR  Y+Q  + R+ +L Q+ +   + Y R      ++  +    +  + +      
Sbjct: 351 QEALLRDQYAQQTQGRMAELEQENLNARAQYERDQLLLQQYDKRMKDLEEQLNNFNSNFN 410

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           L       +   +  L       + +Y+ LA +        +L           K     
Sbjct: 411 LQMNSKDEQ---IKALQEQVNTWRSKYEALAKL------YSQLRQEHLDLLQTTKAL--- 458

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-----RL 590
               +L      E + + ++  R+      T    + D+ +   +AL    R        
Sbjct: 459 ----KLKAASAQEAIDKREKLEREMK----TKNLELADMIRERDRALHERDRLTGTNKEE 510

Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           L + K E+   + +     E +K   + S+L + + ++  +E  EA+
Sbjct: 511 LEKLKRELRLALERAENA-ERQKGTEISSMLSKYNREMADLE--EAL 554


>gi|193212746|ref|YP_001998699.1| SMC domain-containing protein [Chlorobaculum parvum NCIB 8327]
 gi|193086223|gb|ACF11499.1| SMC domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 1226

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 69/217 (31%), Gaps = 7/217 (3%)

Query: 420  LRYYYSQAIRD--RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
            +R    + +    RL+ L  +  T  + +    +            +      L      
Sbjct: 814  IRTLEQEELAGQSRLKNLDDQLATISADFLEKDRDVKAAVTSLEALKSKRAGVLQGHDPD 873

Query: 478  KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
             +    E  L         + +++      +      +  L   L    +  +    E  
Sbjct: 874  VEEERLERTLQAARTKLDELTEKRNAAREALSVLETAIAGLHQALQERRLVLERRE-EAF 932

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
               L ++GF      L+ ++          +A+ ++ R    +A    ++ +L   +   
Sbjct: 933  TLELKQKGFIGEAVFLEARLPIGERQKLEQKADSLNKRAHELEARRKERQTKLHEVR--- 989

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             E+Q+   + +  +E+ A     L EV  +I  I +Q
Sbjct: 990  -ERQLTSESNEKLSERIARRQEQLREVRGRIGAIANQ 1025


>gi|119610410|gb|EAW90004.1| hCG1986604, isoform CRA_a [Homo sapiens]
          Length = 1939

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/277 (9%), Positives = 82/277 (29%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +   +   +    +       +      ELE   K     ++D +      
Sbjct: 1352 EEEQEAKAELQRGMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1411

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1412 NSKCASLEKTKQRLQNEVEDLMIDVERSNAACIALDKKQRNFDKVLAEWKQKYEETQAEL 1471

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+  S L     E         
Sbjct: 1472 EASQKESRSLSTELFKVKNAYEESLDHLETLKRENKNLQQEISDLTEQIAEGGKH----- 1526

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  + ++ +     +       R   +  +  +
Sbjct: 1527 ------------IHELEKVKKQLDHEKSELQTSLEEAEASLEHEEGKILR---IQLELNQ 1571

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1572 VKSEIDRKIAEKDEELDQLKRNHLRVVESMQSTLDAE 1608


>gi|1556433|emb|CAA67641.1| lamin C2 [Rattus norvegicus]
          Length = 461

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 94/281 (33%), Gaps = 34/281 (12%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             R     A       +L       KR  E    +   + A+LE  L      ++D+ LR
Sbjct: 18  QARLKDLEALLNSKEAALSTALSE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLR 76

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                   +RLQ L ++   + + Y    ++  R  + +       +    + +L+    
Sbjct: 77  RV---DAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ 133

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                          +  +   ++   +    EL+K +S    +  +        +    
Sbjct: 134 --------------ELRAQHEDQVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAH 176

Query: 542 CERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            E     + +  L  Q+       A  EA + D+     +     +R         E E+
Sbjct: 177 EELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRL------LAEKER 230

Query: 601 QIAQVTAKGEA--EKTAILISILHEVHIQIHQ----IESQE 635
           ++A++ A+ +   ++   L+ I   + ++IH     +E +E
Sbjct: 231 EMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEE 271


>gi|76789355|ref|YP_328441.1| hypothetical protein CTA_0669 [Chlamydia trachomatis A/HAR-13]
 gi|76167885|gb|AAX50893.1| hypothetical membrane associated protein [Chlamydia trachomatis
           A/HAR-13]
          Length = 429

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVD---VRQGYQQALALYKRFRLLSRQKEEI 598
            + G   + + ++++ ++        +  +      R+ + QA   Y     LSR+ +E 
Sbjct: 108 QDEGLKNIRETIEKRQKETDRLKLHNDKLVEQLGQAREVFIQAKGRYDHMEELSRRLKEE 167

Query: 599 EKQIA---QVTAKGEAEKTAILISILHEVHIQIH 629
            +Q+    +   +   EK      +L E+   + 
Sbjct: 168 NQQLQIQLEAAVRECNEKILENQELLQELKETLA 201


>gi|42518116|ref|NP_964046.1| hypothetical protein LJ0031 [Lactobacillus johnsonii NCC 533]
 gi|41582400|gb|AAS08012.1| hypothetical protein LJ_0031 [Lactobacillus johnsonii NCC 533]
          Length = 288

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 77/211 (36%), Gaps = 13/211 (6%)

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
            +   Y   +   + ++    + E   +     K    + +  P+Q  +       +   
Sbjct: 25  IVSQSYYSKVEKEIHRITADDLLEILNHNGIPVKEFFEKLEIDPNQWQIDKINKLMEEIT 84

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           K S  E A+          +++  +++  +   N EL++    +   F+E +   PE   
Sbjct: 85  KASYSEQAI--------DQIRKIREKVKKLDL-NPELKEEALLIIDGFIELEKDDPETFD 135

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           ++L  +   ++    +       L++   +    D      + +      + + RQ+E +
Sbjct: 136 EKLRTKLKEKIFMMPEYNTHKLSLYANFIDLYDFDSNLQIIRQINKVLERKPIERQEEIL 195

Query: 599 ----EKQIAQVTAKGEAEKTAILISILHEVH 625
                  + Q   + + +KT  +I++++++ 
Sbjct: 196 FAIVLNVLGQAVKEKKYDKTDEIINLINQIK 226


>gi|11499613|ref|NP_070855.1| hypothetical protein AF2031 [Archaeoglobus fulgidus DSM 4304]
 gi|2648520|gb|AAB89238.1| predicted coding region AF_2031 [Archaeoglobus fulgidus DSM 4304]
          Length = 286

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 74/207 (35%), Gaps = 7/207 (3%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
            + IR +  ++F++    +    +  +   +     G  ++ ++    K + +     +E
Sbjct: 66  VKEIRAKRNEIFKEVDALYKEVDKLRRSIDKGGRPLGEIEKEIRRLEFKQQTAVLTIEKE 125

Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544
            AL+  +      L+E+  +L      + E ++L S +     + +     E+     E 
Sbjct: 126 RALVERIAKLRKELEERKAQLER----HEEFKRLISRIRELKDQAREL-LNELKAYAEEA 180

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604
              +  +QL +   +        +       +  ++A   +       +  +++EK I  
Sbjct: 181 --DKYHEQLTQMFSEIDEMRKLADEMHEKFIESKKEADRCHNEAIKRRKDIKDLEKVIKA 238

Query: 605 VTAKGEAEKTAILISILHEVHIQIHQI 631
           + +K    K       L     +I+++
Sbjct: 239 LKSKQVKTKEQREKEELIRRAKEIYEM 265


>gi|14042847|dbj|BAB55415.1| unnamed protein product [Homo sapiens]
          Length = 612

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 95/290 (32%), Gaps = 10/290 (3%)

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            + +  Y +    +L      L +   + E    +     +   L           +D+ 
Sbjct: 282 QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDGMRLMEEELRDYQRAQDEA 341

Query: 420 L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           L  R    Q ++D   +L  K   +        +   +    +   +    +S +  +  
Sbjct: 342 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLTERI 401

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLP 534
            +   +   L   L+   A  Q+   +   +   N +L+     L   +    E      
Sbjct: 402 SRSREQMEQLRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQM 461

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLL 591
           E     L +R   E   + + Q+ +  L     E  +    +      Q   L  R + +
Sbjct: 462 EARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAM 521

Query: 592 SRQKEEIEKQIAQVTAKGEA-EKTAILISILHE-VHIQIHQIESQEAMIE 639
            RQ EE E++I ++ +  +  ++       ++E +  Q++ ++    + +
Sbjct: 522 KRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLRLKK 571


>gi|9506843|ref|NP_062263.1| prelamin-A/C isoform C2 [Mus musculus]
 gi|505027|dbj|BAA03578.1| lamin C2 [Mus musculus]
 gi|1794161|dbj|BAA08571.1| lamin C2 [Mus musculus domesticus]
 gi|148683329|gb|EDL15276.1| lamin A, isoform CRA_b [Mus musculus]
          Length = 462

 Score = 38.3 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 94/281 (33%), Gaps = 34/281 (12%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             R     A       +L       KR  E    +   + A+LE  L      ++D+ LR
Sbjct: 19  QARLKDLEALLNSKEAALSTALSE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLR 77

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                   +RLQ L ++   + + Y    ++  R  + +       +    + +L+    
Sbjct: 78  RV---DAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ 134

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                          +  +   ++   +    EL+K +S    +  +        +    
Sbjct: 135 --------------ELRAQHEDQVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAH 177

Query: 542 CERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            E     + +  L  Q+       A  EA + D+     +     +R         E E+
Sbjct: 178 EELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRL------LAEKER 231

Query: 601 QIAQVTAKGEA--EKTAILISILHEVHIQIHQ----IESQE 635
           ++A++ A+ +   ++   L+ I   + ++IH     +E +E
Sbjct: 232 EMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEE 272


>gi|332020912|gb|EGI61310.1| TBC1 domain family member [Acromyrmex echinatior]
          Length = 915

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 74/222 (33%), Gaps = 27/222 (12%)

Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477
           +  + Y    ++++ +++ +             +      +    + RL++  + + +  
Sbjct: 503 KLEKDYTILKMKEQ-EEMVELRRLRAENRLLRQRTELLEAESAELADRLVRGQVSRAEEE 561

Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
           +   + +  L         +     +    +   + EL+ L   L  +   ++  L E +
Sbjct: 562 ETAFIAQRELAA-------LRHSHLETSHQLEQAHEELRSLSILLEENVTSRQSSLDEIV 614

Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
            ++       E+++ L  ++    L  A  +A I                 R L  + +E
Sbjct: 615 VKQEALSQKEEMIQCLQEELVRVRLHEAENDALI-----------------RELRGRIQE 657

Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639
           +E+    +         A L   L  V   + + E+  ++ +
Sbjct: 658 LEQDKKTLRESTPDNSVAHLQEELIAVK--LREAEANLSLKD 697


>gi|327262677|ref|XP_003216150.1| PREDICTED: ninein-like protein-like [Anolis carolinensis]
          Length = 1125

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 16/276 (5%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            D   + +        I  +    D    +     S    +   E   + +  I+ +K ++
Sbjct: 750  DDMKKKHEIEMDLMRIQLATVSEDNTLLKNKLGISQQEVEVACEANTNHRKEIDELKMER 809

Query: 420  LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
             +        ++L   +++ I +              +     + R   + L +     +
Sbjct: 810  EKAMCKIEELNQLNNHYKEEIFQLKVGSNQLSHEVSEQSSYNKANRKTIAELKQRFAELE 869

Query: 480  PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539
                   L         + ++  +  A++  ++ +LQ       +   EQ     E    
Sbjct: 870  RQKAHETL---------VAKQLQEASAELTKEHLQLQ------LAWQGEQARMEQELKAS 914

Query: 540  RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEI 598
            R   +   EL  +L+R  ++  +          +  +   Q L    R  L   R  EE+
Sbjct: 915  REKSKRLQELESELERLTQECQVLRLAKAQLTDEAEEYQDQLLEANTRLSLAESRHAEEL 974

Query: 599  EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++  +Q+      +  A + + L E   +I  +E +
Sbjct: 975  QQLRSQMDGFVPKDCLAEVENRLTEEQKRIRLLEGE 1010


>gi|297484808|ref|XP_002694628.1| PREDICTED: citron (rho-interacting, serine/threonine kinase 21)
           [Bos taurus]
 gi|296478632|gb|DAA20747.1| citron (rho-interacting, serine/threonine kinase 21) [Bos taurus]
          Length = 1976

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 30/299 (10%), Positives = 91/299 (30%), Gaps = 32/299 (10%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              +       +   + +   + +   +E   ++     E  EL  +++      + +  
Sbjct: 564 DQGKPEVGEYAKLEKINAEQQLKIQELQEKLEKAVKASTEATELLQNIRQAKERAERELE 623

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           + +  +   + +++   +       +                 ++  +  +       K 
Sbjct: 624 KLHNREDSSEGIKKKLVEAEELEEKHREAQVSAQHLEVHLKQKEQHYEEKIKVLDNQIKK 683

Query: 481 SLREAALLLTLIN-HPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKYFLPE 535
            L +   L  L+  H     E+ + L++    I   +++++ L   +       K     
Sbjct: 684 DLADKETLENLMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANS 743

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----------QALAL 584
            +  +   +   E++ +L +Q       +   EA    + +  +           + L L
Sbjct: 744 SLFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKNRLLEL 803

Query: 585 YKRFRL-----------LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
             R R            L RQ  E++  + +  +     +   L +    +  Q+ Q +
Sbjct: 804 ETRLREVSLEHEEQKLELKRQLTELQLSLQERES-----QLTALQAARAALESQLRQAK 857


>gi|259488265|tpe|CBF87581.1| TPA: Golgi matrix protein, putative (AFU_orthologue; AFUA_1G08830)
           [Aspergillus nidulans FGSC A4]
          Length = 510

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 76/213 (35%), Gaps = 19/213 (8%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + +RL++  ++     S      ++N+  +++       +     +    +   LRE  
Sbjct: 155 QLGERLKEDAEEISQARSRIEELEEQNSSTKEEYEAKISELSEENQRM-AKELSELRER- 212

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER-- 544
              T ++    L+E+   L    Y  +E ++    + +   E        I + L E+  
Sbjct: 213 ---TNLSQQNWLREKDDLLEQESYLQSEFEQAKEAMHNW--EVLAMEERSIRENLGEKVI 267

Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLL----SRQKEEIE 599
              E L  L            +  A +  +++  Q+  A  K+  R L      Q E ++
Sbjct: 268 DLEEQLTTLKDAYERTSAERDSQAAAVDGLQRALQEIQAARKQELRELVESSDAQLEGLK 327

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632
           + + +  +K         +  L ++  ++ ++ 
Sbjct: 328 QSLNEAKSKES-----EAMKSLQDLQQELERVR 355


>gi|326665596|ref|XP_003198075.1| PREDICTED: hypothetical protein LOC793072 [Danio rerio]
          Length = 1190

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 35/328 (10%), Positives = 106/328 (32%), Gaps = 31/328 (9%)

Query: 322  DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
            D          K+ +L       GNR         +D    ++        K   +S   
Sbjct: 780  DESIEDYLKRSKSAELQKLIRDCGNRFLAFNNREKQDKTQVMKLLKMIEELKTNNQSGYF 839

Query: 382  VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD--QKLRYYYSQAIRDRLQQLFQKY 439
             + +++    +      +   E E  ++     ++D  +       + + +  ++  ++ 
Sbjct: 840  TNDMFEEAEMSIKKKMEEIMKEREREIQKQKEELQDKYEMEMNTLKERLEEEKRKADEEK 899

Query: 440  ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499
                + + +  +K  +  ++K  ++R  Q    +  L ++   +EA        +   ++
Sbjct: 900  QQRENEFRKREEKLKKEFEEKQEAERQKQEMEKQKLLEEEKQKKEA--------YDREIE 951

Query: 500  EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559
            E  +E+ + R    + Q+          E+     +++          +++ +L  +  +
Sbjct: 952  EMKREMDNQRSQYEQQQREREDEDRKREEKYRQDQDKMRN-----EQEQIIAELKTKHEE 1006

Query: 560  AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619
                    E    +  +  ++      +     R+  EI+++I +   + E EK   +  
Sbjct: 1007 ETKLRDLEEKRRKEEEEKERERWERKIKEAENDRE--EIQEEIKRQQREWEDEKKRQMRE 1064

Query: 620  --------------ILHEVHIQIHQIES 633
                           L E   ++ ++  
Sbjct: 1065 REEEEIKRKEKHEEQLREKQEELEKMRK 1092


>gi|254414374|ref|ZP_05028141.1| hypothetical protein MC7420_5926 [Microcoleus chthonoplastes PCC
           7420]
 gi|196179049|gb|EDX74046.1| hypothetical protein MC7420_5926 [Microcoleus chthonoplastes PCC
           7420]
          Length = 231

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 39/110 (35%), Gaps = 6/110 (5%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVR--QGYQQALALYKRFRLLSRQKEEIE 599
             +   ++ +Q  +            +  + D +  +   QA+   +      ++ + + 
Sbjct: 102 SNQAIEQITQQAQQAETQLETQVQQIDTLLEDPQQLERLDQAIESGQAQGEQLQRLQALR 161

Query: 600 KQIAQV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG--FGKMS 645
           +Q+  +    +  A++T    + +     ++ Q    EA+  G   G  S
Sbjct: 162 EQLQALKTDPEAIAQRTEQAQTQIRSRRQELEQRARTEALKRGIRIGLSS 211


>gi|149636712|ref|XP_001513966.1| PREDICTED: similar to Cingulin-like 1 [Ornithorhynchus anatinus]
          Length = 653

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573
           + + L S +     E      E +  ++  R   EL +QLD + RD              
Sbjct: 479 QNKDLKSRIL-HLEESHRSGKEGLVTQMEAR-LSELEEQLDAEKRDRVTLQVNNRRLERR 536

Query: 574 VRQGYQQALALYK-----------RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622
           V++   Q    +            R + + RQ EE E++I ++ +    +K    +    
Sbjct: 537 VKELVMQVDDDHLSLTDQKDQLSLRLKAMKRQMEEAEEEIDRLESA--KKKLQRELEEQV 594

Query: 623 EVHIQIH 629
           +V+ Q+ 
Sbjct: 595 DVNEQLQ 601


>gi|145546033|ref|XP_001458700.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426521|emb|CAK91303.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1237

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 93/281 (33%), Gaps = 18/281 (6%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD---QKL 420
           +       +K+             R+ E +              L+N IN +     ++ 
Sbjct: 722 KIKEHDINQKIKQNMYTKEKDELIRKLEEQIDQLEKREKAKIQELENTINKLDSDFKEEK 781

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480
           +  Y    +++                R  +     + +    QR ++    K   +K  
Sbjct: 782 KQLYENHEKNKKTTENDFKQKMALESQRLEELTKEKQLKLQEFQRYIKEQKDKSTETKNE 841

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540
             RE         +   L+++ +    ++ D  E Q+ +    +   +      ++  + 
Sbjct: 842 KKRE---------YEKQLKKEQELYEQLQRDKEENQRRFIEERNKLEDDAEKEIDK-KKE 891

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
           + E    +L  +LD+    A L   T +    +V+   +QA +  K       Q +E+ +
Sbjct: 892 INEAEMKKLSDELDK----AELEKRTKKTEFDNVQSTLEQANSKVKEIMEDIAQNQELNR 947

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641
           Q  +     + E        + +   +I++++ +   +E F
Sbjct: 948 QYQKEKESHDKEIKERD-KTIQDKQKRIYELKKKTQELEKF 987


>gi|119889876|ref|XP_590008.3| PREDICTED: similar to Interferon-induced guanylate-binding protein
           1 (GTP-binding protein 1) (Guanine nucleotide-binding
           protein 1) (HuGBP-1) isoform 3 [Bos taurus]
 gi|297472989|ref|XP_002686310.1| PREDICTED: similar to Interferon-induced guanylate-binding protein
           1 (GTP-binding protein 1) (Guanine nucleotide-binding
           protein 1) (HuGBP-1) [Bos taurus]
 gi|296489266|gb|DAA31379.1| Interferon-induced guanylate-binding protein 1 (GTP-binding protein
           1) (Guanine nucleotide-binding protein 1) (HuGBP-1)-like
           protein [Bos taurus]
          Length = 591

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/156 (10%), Positives = 51/156 (32%), Gaps = 19/156 (12%)

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH---------------QRL 541
           +  E+ QEL    +           +  ++++ K  + + I                +R+
Sbjct: 433 LFIEKMQELKKKYFQEPRKGIQAEEILQEYLKSKESVTDAILQTDQTLSEKEKLIEVERV 492

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                    K L+             E +  +  +   + +    R  LL  Q+  +  +
Sbjct: 493 KAESAQAAAKMLEEMQIKNQQMMEQKEKSYQEHVKQLTEKME-RDRALLLEEQERTLALK 551

Query: 602 IAQ---VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           + +   +  +G  E+   L   +  +  ++++ + +
Sbjct: 552 LQEQSRLLQEGFQEENRRLHKEIQSLQKKMNKPKKE 587


>gi|86606057|ref|YP_474820.1| hypothetical protein CYA_1387 [Synechococcus sp. JA-3-3Ab]
 gi|86554599|gb|ABC99557.1| conserved domain protein [Synechococcus sp. JA-3-3Ab]
          Length = 618

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 73/224 (32%), Gaps = 13/224 (5%)

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-SQRLMQSSLVKGKLSKKP 480
            +Y + +     QL ++         R  ++  R  + +   + ++ Q S       ++ 
Sbjct: 206 EHYQEQVAALEAQLERERQQLVESQSRQQQQQQRIAELEAQLAAQIQQGSEQHRAAQQRI 265

Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV--EQKYFLPEEIH 538
              E  L            +       ++    EL+ L            Q     +E+ 
Sbjct: 266 QELEEQLRA---QQDRGSAQVQALAEQLQAAQAELETLRRHCHELTEWQSQAKLKLQELG 322

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
            RL +    E   +   + ++A L + +        +    Q+         L+  ++E 
Sbjct: 323 SRLQQHQQAEAQLRQALEHKEAELAALSQSLQEQQHQLQVAQSTKARL-IADLAHARQEA 381

Query: 599 EKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQ----IESQEA 636
            + I ++  + +  +T +      L EV  Q+      ++S EA
Sbjct: 382 SQTIHRLRGELQEAQTQLQVTQERLQEVQAQLQATQSHLQSTEA 425



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 30/276 (10%), Positives = 86/276 (31%), Gaps = 13/276 (4%)

Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418
           PD            + + ++        +   E  +        E +  +++     + Q
Sbjct: 178 PDQPPLYASPLQVAQQVHKATAQYQARLEHYQEQVAALEAQLERERQQLVESQSRQQQQQ 237

Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
           +        +  ++QQ  +++           ++    +D+     + +   L   +   
Sbjct: 238 QRIAELEAQLAAQIQQGSEQHRAAQQRIQELEEQLRAQQDRGSAQVQALAEQLQAAQAEL 297

Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538
           +   R    L           +   +L ++     + Q+         +E K      + 
Sbjct: 298 ETLRRHCHELT------EWQSQAKLKLQELGSRLQQHQQ-AEAQLRQALEHKEAELAALS 350

Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598
           Q L E+     + Q  +    A L  A  EA+   + +   +      + ++   + +E+
Sbjct: 351 QSLQEQQHQLQVAQSTKARLIADLAHARQEAS-QTIHRLRGELQEAQTQLQVTQERLQEV 409

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           + Q+    +           + L +   Q+ Q+++Q
Sbjct: 410 QAQLQATQSH-----LQSTEAQLQQAREQVRQLQAQ 440


>gi|36031035|ref|NP_031816.2| structural maintenance of chromosomes protein 3 [Mus musculus]
 gi|29336931|sp|Q9CW03|SMC3_MOUSE RecName: Full=Structural maintenance of chromosomes protein 3;
           Short=SMC protein 3; Short=SMC-3; AltName: Full=Basement
           membrane-associated chondroitin proteoglycan;
           Short=Bamacan; AltName: Full=Chondroitin sulfate
           proteoglycan 6; AltName: Full=Chromosome segregation
           protein SmcD; AltName: Full=Mad member-interacting
           protein 1
 gi|4689090|gb|AAD27754.1|AF047601_1 SMCD [Mus musculus]
 gi|5326862|gb|AAD42073.1|AF141294_1 bamacan [Mus musculus]
 gi|95104800|gb|ABF51669.1| Cspg6 [Mus musculus]
          Length = 1217

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 36/346 (10%), Positives = 93/346 (26%), Gaps = 24/346 (6%)

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T     ++  L K     +   + +   L    K   +                    D 
Sbjct: 182 TEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDE 241

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            S  R        +L        D +   E + R   T     + E             +
Sbjct: 242 LSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQL-------SAE 294

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    Q  +  L+    +     +   R      R +  +   ++  + +  + K +  
Sbjct: 295 RQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSV 354

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK--LWSFL--FSDFVEQKYFLPE 535
               E  +               ++    ++ + E +   +   L      +  K     
Sbjct: 355 KEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIA 414

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            IH+ L +               +             D+ +   +   L +++  +  +K
Sbjct: 415 AIHKDLEDTE------------ANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKK 462

Query: 596 EEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMIEG 640
           +E++ +   +  +  AE +         E   Q+ +  + +A++ G
Sbjct: 463 DELQSERNYLWREENAEQQALAAKREDLEKKQQLLRAATGKAILNG 508


>gi|326428710|gb|EGD74280.1| hypothetical protein PTSG_12424 [Salpingoeca sp. ATCC 50818]
          Length = 631

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 85/302 (28%), Gaps = 38/302 (12%)

Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426
                 +        ++ L   + +       ++        +         K+     +
Sbjct: 236 NVDDLLEQRRREQEHIERLLTSQDKREEDRAHEQAELRRRQAEEDARRDAILKINQQQKR 295

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
           A+ + + Q   +  T         ++      +K  ++      L +  + +    R   
Sbjct: 296 ALAEEIAQRENEDATRMVELQEQARRERLALLEKLSTEDSELDELARRAIEEWHRKR--- 352

Query: 487 LLLTLINHPAILQEQYQELADIR--YDNNEL--QKLWSFLFSDFVEQKYFLPEEIHQ-RL 541
                 N PA+ Q+  +   DI   +    L  Q       +   E      +      L
Sbjct: 353 ------NDPALRQQMLEAEDDINERFIAVSLAKQASREAAIAALHEHDEQQIKIARDADL 406

Query: 542 CERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-------- 592
                  L L+QL                ++ + R     AL   +R R L         
Sbjct: 407 EMEQAKTLALEQLRHHQAKLDSAMHQFVRDVEETRHAQGDALKEEERQRYLLLTGAAQET 466

Query: 593 --------RQKEEIEKQIAQVTAKGEA---EKTAILISIL----HEVHIQIHQIESQEAM 637
                    + E++ +++  +    +A   EK    +  L     E+  ++  ++ QEA 
Sbjct: 467 DARRQARLAEIEDLNRKLESLALHNDAVKFEKQERRVQELAVQREEMEKRLQILKKQEAE 526

Query: 638 IE 639
            E
Sbjct: 527 KE 528


>gi|325116600|emb|CBZ52153.1| regulator of chromosome condensation domain-containing protein
            [Neospora caninum Liverpool]
          Length = 1733

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 87/284 (30%), Gaps = 23/284 (8%)

Query: 370  AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429
            A  +   E+  +++     + +       +   E +    +    ++           + 
Sbjct: 1056 AKLEESAEANSVMERALAAQKKRIQTLQEELDEEAQQSHNDLTQVLQKLSQAEQDRAKLA 1115

Query: 430  DRLQQLFQKY--------ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
              L               + E         +      +   + +L Q+    G+  +  +
Sbjct: 1116 RSLAAAQDSLQTFQKHKPLQERLEREASALRQQLKTQKDEQAHQLKQAEEAIGEWREAHA 1175

Query: 482  LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
              + AL+    N  + + E+  E+  ++    +L++    +            E   QR 
Sbjct: 1176 KLQEALMEAEQNRKSEVDERQAEVDRLQKQLQQLEEELQHVKDQVDMASQSTIETERQR- 1234

Query: 542  CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                  E + +L+  + +     A ++      ++          R     ++ EE+ ++
Sbjct: 1235 -RVAAEERVDELEAALNELAADFAASKRANTRQKRELDSVTEEKLRA---LQENEELREE 1290

Query: 602  IAQVTAKGEAEKTA--ILISILHEVH-----IQI---HQIESQE 635
            + +   +   E+     L S + E+       ++    Q+E  E
Sbjct: 1291 LQRARDEIGKEEVRVSSLQSEIQELRVAASGAELAKNRQLEVTE 1334


>gi|291405103|ref|XP_002719106.1| PREDICTED: centrobin, centrosomal BRCA2 interacting protein isoform
           3 [Oryctolagus cuniculus]
          Length = 930

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 72/202 (35%), Gaps = 13/202 (6%)

Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
           + +++R Q L ++   +        ++ A+   +      L QS + + +     + RE 
Sbjct: 368 RQLKERCQALQEEGQAQLEREKGSSQREAQAAREAQQQLALAQSEVRRLEGELDTARRER 427

Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP---EEIHQRLC 542
             L   +   +++Q +Y+    I+ ++    +L   +     + +         + +   
Sbjct: 428 DALQLEM---SLVQARYES-QRIQMESELAVQLEQRVTERLAQAQESSIRQAASLREHHR 483

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLSRQKEEIEKQ 601
           ++   +L  Q  +++           A   + +Q   Q   L   R +   R+ +   +Q
Sbjct: 484 KQ-LQDLNGQHQQELATQLAQFKVEMAEREERQQQVAQDYELRLAREQARVRELQSGNRQ 542

Query: 602 IAQVTAKGEAEKTAILISILHE 623
           + +       E    L ++L  
Sbjct: 543 LEEQR----VELVERLQAMLQA 560


>gi|224074807|ref|XP_002190456.1| PREDICTED: similar to myosin, heavy chain 1, skeletal muscle, adult
            [Taeniopygia guttata]
          Length = 1942

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 26/268 (9%), Positives = 80/268 (29%), Gaps = 17/268 (6%)

Query: 376  VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435
             +    +D     + E       +    ++         I+ +       + +   L ++
Sbjct: 1572 NQVKSEIDRKIAEKDEEIDQMKRNHLRIVDSMQSTLDAEIRSRNEALRLKKKMEGDLNEM 1631

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK-LSKKPSLREAALLLTLINH 494
              +    +       K     +     +Q  +  +L   + L ++ ++ E          
Sbjct: 1632 EIQLSHANRQAAEAQKNLRNTQAVLKDTQIHLDDALRTQEDLKEQVAMVERRA------- 1684

Query: 495  PAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553
              +LQ + +EL          +KL    L       +    +       ++     + Q+
Sbjct: 1685 -NLLQAEVEELRAALEQTERSRKLAEQELLDASERVQLLHTQNTSLINTKKKLETDISQI 1743

Query: 554  DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKG 609
              ++ D    +   E                 K+ +     L R K+ +++ +  +  + 
Sbjct: 1744 QSEMEDTIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLDQTVKDLQHRL 1803

Query: 610  EAEKTAIL---ISILHEVHIQIHQIESQ 634
            E  +   L      + ++  ++ ++E +
Sbjct: 1804 EEAEQLALKGGKKQIQKLEARVRELEGE 1831



 Score = 37.6 bits (85), Expect = 7.0,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 84/277 (30%), Gaps = 28/277 (10%)

Query: 366  YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL----- 420
              +   +  +  +L   +    +       +      ELE   K     ++D +      
Sbjct: 1354 EEEQDAKGELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAV 1413

Query: 421  --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
              +    +  + RLQ   +  + +            + +          +    + +   
Sbjct: 1414 NAKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQKNFDKILAEWKQKYEETQAEL 1473

Query: 479  KPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537
            + S +E  +L   L       +E    L  ++ +N  LQ+  S L     E         
Sbjct: 1474 EASQKESRSLSTELFKMKNAYEESLDHLETMKRENKNLQQEISDLTEQIAEGGK------ 1527

Query: 538  HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597
                        + +L++  +      +  +A++ +     +       R   L  +  +
Sbjct: 1528 -----------AIHELEKVKKQVEQEKSELQASLEEAEASLEHEEGKILR---LQLELNQ 1573

Query: 598  IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            ++ +I +  A+ + E   +  + L  V      ++++
Sbjct: 1574 VKSEIDRKIAEKDEEIDQMKRNHLRIVDSMQSTLDAE 1610


>gi|221633455|ref|YP_002522680.1| hypothetical protein trd_1477 [Thermomicrobium roseum DSM 5159]
 gi|221157007|gb|ACM06134.1| hypothetical protein trd_1477 [Thermomicrobium roseum DSM 5159]
          Length = 356

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQ 601
           E+    L++ ++R  + A    A  +A I  + Q          R    +  Q E + K+
Sbjct: 44  EQAVDRLIEAMERDRQAAREREARIDAQIERLGQRIDDVARSIDRLADRVEAQIEALTKR 103

Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           + +V A     +   L + +  V  QI  +  +   +EG
Sbjct: 104 MERVEA-----QIEALTARMERVEAQIEALTQRMERVEG 137


>gi|193216885|ref|YP_002000127.1| massive surface protein MspG [Mycoplasma arthritidis 158L3-1]
 gi|193002208|gb|ACF07423.1| massive surface protein MspG [Mycoplasma arthritidis 158L3-1]
          Length = 2711

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 39/326 (11%), Positives = 97/326 (29%), Gaps = 20/326 (6%)

Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381
           D +   L  +     +    L  G   N       +     ++ Y +    + +  +   
Sbjct: 446 DENTLPLAISQLEDAIAKAELALGKHENLKEKELIKSIYDALKAYKEKEAAEALANAKKR 505

Query: 382 VDMLWKRETE-NRSFNTPDERAELEIHLKNCINHIKD-QKLRYYYSQ--AIRDRLQQLFQ 437
            +   + + + +   +          +    +N I D   L+    Q   ++ +++ + +
Sbjct: 506 FEAKKQAKAKIDADLDAKQNEFNKIKNTIESLNSINDIPALQSGIKQLEDLKPQVKAIEE 565

Query: 438 KYITEHSGYGRYWKKN------ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491
                    G    K           + K   ++L +    + +  K        +    
Sbjct: 566 SAKNISYPEGEQKAKKLLEEISKLDLEAKAKLEKLQEEKETQEQEKKLIESLREKITKIT 625

Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551
            N   +      +L++      EL K    L       +    E +     E      L+
Sbjct: 626 KNLETLDSRGKSQLSEATPKQTELAKTLKELEEQLKNAQEAQKE-VQDAHKENALKTELE 684

Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611
           +L+     A       E  I D  +  ++      +   +  + E+++K+I+        
Sbjct: 685 KLEEAKNKATTTKQKLETKISDSNKNIKE------QLDNVKSELEDLKKKISDAYNAKNL 738

Query: 612 EKTAILISILHEVHIQIHQIESQEAM 637
           E    L   L+++     +IE  E +
Sbjct: 739 E---ELTKELNKLEKLKEKIEDLETL 761


>gi|188996887|ref|YP_001931138.1| SMC domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931954|gb|ACD66584.1| SMC domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 891

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 80/242 (33%), Gaps = 7/242 (2%)

Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455
              +   +   ++K  +  I+DQ+ +  Y Q+   +L++  +        Y    K+   
Sbjct: 215 KNYEGLNQKLNNIKQKLKEIEDQEKQASYLQSEIGKLEESIKNIKANIENYENQLKEIES 274

Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515
            + +    +          K S+  S  E  ++          +E  ++L +        
Sbjct: 275 LKAKFSELESKFNQLENLEKKSQILSQIEKLIIT-----KESKEESIKQLEEDLKFLESY 329

Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575
           +             K    +       +    +L KQ+++   D         A + D+ 
Sbjct: 330 KDKAKEFEEKQNSLKQIESKLAEINQIKGEISQLNKQIEKINSDIQKKKQEYMAIVDDLT 389

Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIES 633
           + YQ+   L     ++   KE  + ++ Q+  +     +K + + +    +   +  I+ 
Sbjct: 390 KIYQKFQTLKLNPLMIKEYKEANKLKLQQLEKEIKELEDKLSQVRTEGKALRESLESIQK 449

Query: 634 QE 635
            E
Sbjct: 450 LE 451


>gi|167379432|ref|XP_001735138.1| structural maintenance of chromosomes protein [Entamoeba dispar
           SAW760]
 gi|165903014|gb|EDR28686.1| structural maintenance of chromosomes protein, putative [Entamoeba
           dispar SAW760]
          Length = 915

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 49/108 (45%), Gaps = 7/108 (6%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ---GYQQALALYKRFRLLSRQKEEI 598
            ++    +L++++++ +   +        +  +++    ++      KR  L+ R+ +EI
Sbjct: 260 KQKNLKGILRRMEQENKKHEIMIKKEGRKMDRLKKQKKEWKTQKNGEKRINLIRREMDEI 319

Query: 599 EKQIA----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
           E +I     +  ++ +     I+   +  +  +I  ++ ++ +++ FG
Sbjct: 320 ENRIDIENDRHGSQVDEFVRNIIYFRIEAIRKEIKALKGEKIILKRFG 367


>gi|149048133|gb|EDM00709.1| lamin A, isoform CRA_c [Rattus norvegicus]
          Length = 462

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 94/281 (33%), Gaps = 34/281 (12%)

Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421
             R     A       +L       KR  E    +   + A+LE  L      ++D+ LR
Sbjct: 19  QARLKDLEALLNSKEAALSTALSE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLR 77

Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481
                   +RLQ L ++   + + Y    ++  R  + +       +    + +L+    
Sbjct: 78  RV---DAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ 134

Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541
                          +  +   ++   +    EL+K +S    +  +        +    
Sbjct: 135 --------------ELRAQHEDQVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAH 177

Query: 542 CERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
            E     + +  L  Q+       A  EA + D+     +     +R         E E+
Sbjct: 178 EELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRL------LAEKER 231

Query: 601 QIAQVTAKGEA--EKTAILISILHEVHIQIHQ----IESQE 635
           ++A++ A+ +   ++   L+ I   + ++IH     +E +E
Sbjct: 232 EMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEE 272


>gi|114557602|ref|XP_001147861.1| PREDICTED: guanylate binding protein 1, interferon-inducible, 67kD
           isoform 1 [Pan troglodytes]
          Length = 574

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/276 (9%), Positives = 94/276 (34%), Gaps = 19/276 (6%)

Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY---SQA 427
              +    LP ++       +  +     +              +  + L+        +
Sbjct: 301 VNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDS 360

Query: 428 IRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485
            R+ ++   +    +     +     +  + RD      +   S    G L    S  E 
Sbjct: 361 EREAIEVFIRSSFKDVDHLFQKELAAQLDKKRDDFCKQNQEASSDRCSGLLQVIFSPLEE 420

Query: 486 ALLLTLINHP---AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542
            +   + + P    +  ++ Q+L    Y+          +   +++ K  + + I Q   
Sbjct: 421 EVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGTQAEEILQTYLKSKESMTDAILQT-- 478

Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA--LYKRFRLLSRQKEEIEK 600
                + L + ++++    + + + +A+    ++  +Q        R +LL  Q+  +  
Sbjct: 479 ----DQTLTEKEKEIEVERVKAESAQASAKIYQEHLKQLTEKMENDRVQLLKEQERTLAL 534

Query: 601 QIAQVT---AKGEAEKTAILISILHEVHIQIHQIES 633
           ++ +      +G  +++ I+ + + ++  ++ + ++
Sbjct: 535 KLQEQERLLQEGFQKESRIMKNEIQDLQTKMRRRKA 570


>gi|329663448|ref|NP_001193029.1| serine/threonine-protein kinase TAO1 [Bos taurus]
 gi|73967064|ref|XP_537752.2| PREDICTED: similar to TAO kinase 1 isoform 1 [Canis familiaris]
 gi|149724130|ref|XP_001504258.1| PREDICTED: similar to TAO kinase 1 [Equus caballus]
 gi|297486560|ref|XP_002695720.1| PREDICTED: KIAA1361 protein-like [Bos taurus]
 gi|301753024|ref|XP_002912355.1| PREDICTED: serine/threonine-protein kinase TAO1-like [Ailuropoda
           melanoleuca]
 gi|311267995|ref|XP_003131830.1| PREDICTED: serine/threonine-protein kinase TAO1-like [Sus scrofa]
 gi|281350527|gb|EFB26111.1| hypothetical protein PANDA_000090 [Ailuropoda melanoleuca]
 gi|296476882|gb|DAA18997.1| KIAA1361 protein-like [Bos taurus]
          Length = 1001

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 53/158 (33%), Gaps = 25/158 (15%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              + + L + L            + + +RL E    +L    ++         +T    
Sbjct: 733 QTRQYKALRNHLLE---TTPKSEHKAVLKRLKEEQTRKLAILAEQYDHSINEMLSTQALR 789

Query: 571 IVDVRQGYQQALALYKRFRLL-----------------SRQKEEIEKQI---AQVTAKGE 610
           + + ++   Q L +  +  L                   R+  E+E+++     +  +  
Sbjct: 790 LDEAQEAECQVLKMQLQQELELLNAYQSKIKMQAEAQHDRELRELEQRVSLRRALLEQKI 849

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            E+   L +   E    + + +++E  IE F   S RL
Sbjct: 850 EEEMLALQNERTERIRSLLERQARE--IEAFDSESMRL 885


>gi|57524973|ref|NP_001006140.1| hypothetical protein LOC416044 [Gallus gallus]
 gi|82081156|sp|Q5ZIH9|CC019_CHICK RecName: Full=Uncharacterized protein C3orf19 homolog
 gi|53135861|emb|CAG32464.1| hypothetical protein RCJMB04_26a16 [Gallus gallus]
          Length = 514

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 69/218 (31%), Gaps = 9/218 (4%)

Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488
            +  ++  +    +       + K      +     +       + +   +    E   L
Sbjct: 20  AELFRKQEEFKKEKLLKDAGIFAKPKPSNKKPSIWTKQNTGVAKRAEKDIEQKAEEDQTL 79

Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548
                      + Y+++    + + E + L+   F+  +  K    +E++Q         
Sbjct: 80  DQSRKKLEEKAKLYEKMTKGDFPDEETEDLYLVDFTQKIIDKQREVQELYQN------EA 133

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQVTA 607
            +K L+++  D  +          D  + +   +    R  R + +    I K   ++  
Sbjct: 134 AIKTLEKETDDEEIEPEMEIPPPEDPDEEWVDYVDSLGRSRRCMKKDLPSILKMDQELQG 193

Query: 608 KGEAEKTAILISI--LHEVHIQIHQIESQEAMIEGFGK 643
           K        L+S     E+  Q  + E +EA+ +  G 
Sbjct: 194 KRLDPDGNTLLSEDMKRELQRQQWEKEEEEALRKPMGP 231


>gi|67524597|ref|XP_660360.1| hypothetical protein AN2756.2 [Aspergillus nidulans FGSC A4]
 gi|40744008|gb|EAA63190.1| hypothetical protein AN2756.2 [Aspergillus nidulans FGSC A4]
 gi|259486329|tpe|CBF84079.1| TPA: SlaB [Source:UniProtKB/TrEMBL;Acc:A9P3U2] [Aspergillus
           nidulans FGSC A4]
          Length = 967

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 38/300 (12%), Positives = 98/300 (32%), Gaps = 34/300 (11%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
              R   +   E+L ++         +   + ++    +E+  L+   +      ++Q +
Sbjct: 228 EARRQQEEFEAEQLRLQQQWEEQQRQQLLAQQQAQRDFEEQQRLQAEQQRLA---QEQLM 284

Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYW----KKNARHRDQKGPSQRLMQS-SLVKGK 475
           R  Y    + RL +L ++ +   + Y R      + + R +D +    +L  + ++    
Sbjct: 285 REQYQSQTQGRLAELERENLNARAQYERDQLMLQQYDRRVKDLEEQMSQLTSNLNMQNAS 344

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP- 534
              +    +  +      +   L + Y +L       + LQ   S        Q+     
Sbjct: 345 KDDQIRSLQEQVNTWRSKY-EALAKLYSQLRQEHL--DLLQTTKSLKLKAASAQEAIERR 401

Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594
           E++ + L  +   EL   +  + R        T +N  ++ +  ++     +R     RQ
Sbjct: 402 EKLERELKTKNL-ELADMIRERDRALHDRDRLTGSNKDELEKVKRELRFAIERAENAERQ 460

Query: 595 ---------------KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIES 633
                            ++E+ +   T   E       +        L E   ++  +++
Sbjct: 461 KGTEISSLLSKYNREMADLEEALRNKTRALEEYTKNNEMRNGDHELALREKETELEAMQA 520


>gi|116052316|ref|YP_792627.1| putative exonuclease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587537|gb|ABJ13552.1| putative exonuclease [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1211

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 81/293 (27%), Gaps = 15/293 (5%)

Query: 360  DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK-NCINHIKDQ 418
            D   + +              +     ++    +      E  +             + +
Sbjct: 777  DEHWQRWQADPLRTFQALGESIEQRRQQQARLQQVEQRLQELKQRCDESSWQLKQSDEQR 836

Query: 419  KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478
                   + ++  L +L  +       +                +Q  +++        +
Sbjct: 837  NEARQAEERVQAELAELNGRLGAHLGQHACAQDWQLSLEHAAQAAQSAVETLQAPLDSLR 896

Query: 479  KPSLREAALLLTLINHPAILQEQYQELADI-----RYDNNELQKLWSFLFSDFVEQKYFL 533
            +  LR A  L  L       Q+++Q L           +N        L     EQ    
Sbjct: 897  EEQLRLAEALEHLQQQRQRQQDEFQRLQADWQAWRERQDNLDDSRLDALLGLSEEQATQW 956

Query: 534  PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593
             E++ QRL E    +   + +RQ +         E +   +    +Q     +R     +
Sbjct: 957  REQL-QRLQEEITRQQTLEAERQAQLLQHRRQRPETDREALEDNLRQQ---RERLATSEQ 1012

Query: 594  QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
               +   Q+     +   E++  L++ L     +  +      +I   G  SG
Sbjct: 1013 AYLDTYSQLQADNQR--REQSQALLAELERARAEFRRWGRLNELI---GSSSG 1060


>gi|308495896|ref|XP_003110136.1| hypothetical protein CRE_06546 [Caenorhabditis remanei]
 gi|308244973|gb|EFO88925.1| hypothetical protein CRE_06546 [Caenorhabditis remanei]
          Length = 1353

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423
           +       +K   E +     L+    E    +  +             N  ++   R  
Sbjct: 379 KETSVNKIQKDFEEQIIFQRALYSFLIEYTYSHITESL--TSQKHVEIENLNRENAKRLE 436

Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-RDQKGPSQRLMQSSLVKGKLSKKPSL 482
               ++ +L+              +  K       D +   +R+ + +     +     +
Sbjct: 437 IIADLKAKLKNTDDVNYVNSKFDKQTPKAEPPSLPDFEMHEERISEQNDDANDVEMNELI 496

Query: 483 REAALLLTL---INHPAILQEQYQELADIRYD-----NNELQKLWSFL----------FS 524
            E   +  L   I    +     + L    ++     N E   + + L          F 
Sbjct: 497 VENVPVKRLFSEIQLNHLFFHFAENLELDDFEKLKKENAENVSIINTLRTQFLVDNHQFE 556

Query: 525 DFVEQKYFLPEEIHQRLC-----ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
           + ++      E++  +L      +    E   ++ +Q  +    S  +E    +     +
Sbjct: 557 EEIQSHQDEIEQLKSQLEGVDSLKEELREYKTKMQQQTDEMKRISKESEQLKEEKEMNAR 616

Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTA-----KGEAEKTAILISILHEVHIQIHQIESQ 634
             L +  + +      E ++  I ++       K ++EK   L   + ++  Q+ + E  
Sbjct: 617 TVLNMQNKLKEAEVNIERLKLDILELEQPTQQKKADSEKLETLSGTIQDLQTQLKEQEGV 676

Query: 635 EA 636
            A
Sbjct: 677 IA 678


>gi|302818162|ref|XP_002990755.1| hypothetical protein SELMODRAFT_429130 [Selaginella moellendorffii]
 gi|300141493|gb|EFJ08204.1| hypothetical protein SELMODRAFT_429130 [Selaginella moellendorffii]
          Length = 1508

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 69/256 (26%), Gaps = 13/256 (5%)

Query: 377  ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ-AIRDRLQQL 435
            ++L   D          +        +     +      K    R  Y +  +  +  + 
Sbjct: 925  QALEERDSQVHARKGLENQLEEMRELKEAREEEVREMEEKLATARKSYEECVVARKSAEG 984

Query: 436  FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495
                +    G      +       +   +        +   S      +A L        
Sbjct: 985  KVVEVEAELGRLNEELRKMAKSKAEAEEKSRRIDERAQLDRSVAVERLQAELQRLTDQMD 1044

Query: 496  AILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFGELLKQLD 554
            A   E+    +    + +EL+           E ++     E       R   E ++++ 
Sbjct: 1045 ATCDEKEHLASQALIEASELRAEKLEWEDARTELEERLEVAEAQADSLNREHEETVREVL 1104

Query: 555  RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614
               R   +          ++ +   +   L    R L+ +K  +E QI ++  +      
Sbjct: 1105 STSRKREMEV------TSELEKSAARIAQLEASARTLAAEKAALESQIQKLERENS---- 1154

Query: 615  AILISILHEVHIQIHQ 630
              L +   E+  Q+ Q
Sbjct: 1155 -ELRAKYIEISDQLEQ 1169


>gi|293362442|ref|XP_239684.5| PREDICTED: myosin XVIIIb [Rattus norvegicus]
          Length = 2151

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/251 (9%), Positives = 76/251 (30%), Gaps = 28/251 (11%)

Query: 410  NCINHIKDQKLRYYYSQAIRDRLQQLFQ-KYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468
                   +   +        + ++QL Q +   E               DQ+   + + Q
Sbjct: 1683 RVWELESNALEQEKVRSQQENTIKQLEQLRQRFELEIERMKQMHQKDREDQEEELEDVRQ 1742

Query: 469  SSLVKGKLSKKPSLREAALLLTLINHPA----ILQEQYQELADIRYDNNELQKLWSFLFS 524
            S   + +  +    +E       ++       ++     ++    +D    ++L   L  
Sbjct: 1743 SCQKRLRQLEMQLEQEYEEKQAALHEKHDLEGLIGTLCDQIGHRDFDVE--KRLRRDLRR 1800

Query: 525  --DFVEQKYFLPEEIHQR---LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579
                +     L   I      + +    ++  QL++          T +    D+   + 
Sbjct: 1801 THALLSDVQLLLATIEDSKTSISKEELEKVHSQLEQSEAKCEDALKTQKVLTADLESMHS 1860

Query: 580  QALALYK-------RFRLLSRQKEEIEKQIAQVTAKGE---------AEKTAILISILHE 623
            +   + +       +   L  ++ ++ K+I +                 ++A  I  + E
Sbjct: 1861 ELENVTRSKSLVDEQLYRLQFERADLLKRIDEDQDDLNGLMQKHKDLIAQSAADIGQIQE 1920

Query: 624  VHIQIHQIESQ 634
            + +Q+ + + +
Sbjct: 1921 LQLQLEEAKKE 1931



 Score = 37.2 bits (84), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 2/92 (2%)

Query: 550  LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609
            +  L  +V +    +   E          +Q   L +RF L   + +++ ++  +   + 
Sbjct: 1677 VASLKERVWELESNALEQEKVRSQQENTIKQLEQLRQRFELEIERMKQMHQKDREDQEEE 1736

Query: 610  EAEKTAILISILHEVHIQIHQ--IESQEAMIE 639
              +        L ++ +Q+ Q   E Q A+ E
Sbjct: 1737 LEDVRQSCQKRLRQLEMQLEQEYEEKQAALHE 1768


>gi|257388937|ref|YP_003178710.1| chromosome segregation protein [Halomicrobium mukohataei DSM 12286]
 gi|257171244|gb|ACV49003.1| SMC domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 891

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 11/128 (8%)

Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD------RQVRDAGLWSATTEANIVD 573
           + L +    Q+  + +++ Q      + E            R  +   L     +    +
Sbjct: 141 NKLINASPSQRQDMLDDLLQLGKLEEYRERASDARVGIGRVRDDKQGALGQLEEQIAEKE 200

Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT-----AILISILHEVHIQI 628
            R  Y +   L  +    S + E IE Q  +     +  ++         + L E+  +I
Sbjct: 201 ERDLYDRLNELRSQIAQTSEEIERIEGQRERAVETRDDAQSIIDDHEERQAELDELEAEI 260

Query: 629 HQIESQEA 636
            ++    A
Sbjct: 261 DELRETIA 268


>gi|291190218|ref|NP_001167090.1| eukaryotic translation initiation factor 3, subunit A [Salmo salar]
 gi|223648062|gb|ACN10789.1| Eukaryotic translation initiation factor 3 subunit A [Salmo salar]
          Length = 1255

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 40/107 (37%), Gaps = 2/107 (1%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
           +     +I  +L        L +  + ++ A +     E + + +    +     ++R  
Sbjct: 512 QNMPSAQIRNQLT--AMSSSLAKAIQVIKPASMLQEREEQSHLAITAYLKNGRKEHQRIL 569

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636
              +  EE ++++  +  + E E+     + L +V     +   QEA
Sbjct: 570 ARRQTIEERKERLENLNIQREKEELEQREAELQKVRKAEEERLRQEA 616



 Score = 37.2 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 61/167 (36%), Gaps = 21/167 (12%)

Query: 491 LINHPAILQEQYQELADIRYDNN---------ELQKLWSFLFSDF-VEQKYFLPEEIHQR 540
           ++     ++E+ + L ++              ELQK+          E K    E I Q 
Sbjct: 568 ILARRQTIEERKERLENLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERIMQE 627

Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600
             +     + ++L++  +      A    +I ++ +       + K+   L ++K E++ 
Sbjct: 628 HEQIKKKTVRERLEQIKKTELGAKAFKYFDIENL-EDLDPDFIMSKQVEQLEKEKRELQD 686

Query: 601 QIAQVTAKGEAEKTAILISILHEVHI----------QIHQIESQEAM 637
           ++     K +  + A  +  +  +            ++ +++ +E +
Sbjct: 687 RLKNQEKKIDYFERAKRLEEIPLIKKAYEEQRVKDMELWELQEEERI 733


>gi|221120557|ref|XP_002165993.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 1138

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 99/283 (34%), Gaps = 13/283 (4%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
            D           + E  +++     ++    E E+       E    +    N  +++ 
Sbjct: 215 LDEIQERHQEEVESMENRLIQEQKEAEVNAIIEFEDYQERVIREAKNKQAAEVNARSNLS 274

Query: 417 DQKLRYYYS---QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473
            ++++  ++   Q + + LQ L +    +        ++  + R      ++  Q +   
Sbjct: 275 SEEMQQLFAAHNQQMENLLQALQEDKTKQSQSLHEKLEEKRKARLNALRKKQENQLAREL 334

Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533
            +  K+ +  E      +      + +  +++      N  ++ +   +      ++   
Sbjct: 335 LEQKKELADTERK--AVIDAERQAILDAIRDIG-----NGSIESIIKKILDFRHAKEMMQ 387

Query: 534 PEEIHQRLCERGFGELLKQLD-RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592
            + +     +    ELL++LD + + D    +A  E  + ++     Q      R +LL+
Sbjct: 388 LDALFAEEHKVKVDELLERLDSKHLCDIDELNAKHENELKELIVTDDQEENDQLRAQLLN 447

Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635
            Q+ E++      + +  A K   L     E+     +++ +E
Sbjct: 448 NQQIELKMLKKNHSDQKIAAKKNALADW--ELRYAKGKLDLKE 488


>gi|198438205|ref|XP_002125846.1| PREDICTED: similar to CCDC46 protein [Ciona intestinalis]
          Length = 901

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 92/279 (32%), Gaps = 20/279 (7%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +D     +   K        +++           +    +  ++   +E  L+      K
Sbjct: 519 KDEQIVKQSMEKKQVSTQAEQAIDNYKRHVNEAQQKVYADMRNQLERMERDLE------K 572

Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM-------QS 469
            Q  R    +  R ++ +L + +  E +      +       Q+  S+          Q 
Sbjct: 573 SQVTREKLQEEFRKQISELKEAHNDELNRQRLMQEHEKEVDHQRATSEHEKVVRDYEHQL 632

Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529
           S  + +L +    +E       + H   +     ++ D+R +      L        VE 
Sbjct: 633 SQSEARLRESLEEQERIAEERKLQHQEAIANLESQIRDLREEVVNSNSLRR---QQLVEL 689

Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
                EE  ++   +    ++ +L+ ++    +      A  ++ RQ  +    L +   
Sbjct: 690 GLLREEE--RQKSTKEHDSVVSRLEAEIDRQRMEMHQQHAAELE-RQAQKTKTRLDQLEH 746

Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628
              ++ +    +IA+   K E E    L+S+  EV  Q+
Sbjct: 747 DHRQRLDRSHDRIAEAQRK-EQEMRETLMSVKKEVEDQM 784


>gi|158299277|ref|XP_319389.3| AGAP010207-PA [Anopheles gambiae str. PEST]
 gi|157014288|gb|EAA13790.4| AGAP010207-PA [Anopheles gambiae str. PEST]
          Length = 1360

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 76/239 (31%), Gaps = 16/239 (6%)

Query: 407  HLKNCINHIKDQKLRYYYSQAI----RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462
              +     +     R    + +      + + L ++   +     +     AR  D K  
Sbjct: 881  RAQQLHAKLSSPSRRRSLHETLKKYQAKQTRALEKRQALQKEKALKIQHLLARVEDVKAA 940

Query: 463  SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSF 521
             Q L++   ++ +   + +    +    L +      ++ ++L +I +  N E Q     
Sbjct: 941  KQCLIEKKRLRMEERLQRAAENRS--QYLKDKIKKAHDEEEKLREIAFIKNLEAQNKRLD 998

Query: 522  LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581
                  EQ+        Q L         ++  ++           +     ++Q  +  
Sbjct: 999  FLESCKEQEVR-----LQDLETERQKRAEEKAAKEAAVERRRQEIEQERQKKLQQMSENR 1053

Query: 582  LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH----EVHIQIHQIESQEA 636
                KR   +  QKE   + +A+  A+   E+   L         E+  +I Q + + A
Sbjct: 1054 REREKRVGKMQEQKERQRQALAREKARDREERLLALQQQKLATAEELQRKIIQKQQESA 1112


>gi|148676106|gb|EDL08053.1| vimentin, isoform CRA_a [Mus musculus]
          Length = 405

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 17/149 (11%)

Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE------------ 543
            +       +  +R+   + + L + L     + K  L +   + + E            
Sbjct: 109 ELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDK 168

Query: 544 ----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599
                    L + + R            E     ++   Q           L R+ E ++
Sbjct: 169 ARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQ 228

Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQI 628
           ++IA +    + E+   L + + E H+QI
Sbjct: 229 EEIAFLKKLHD-EEIQELQAQIQEQHVQI 256



 Score = 37.9 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 509 RYDNNELQKLWSFLFSDFVEQKYF-----LPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563
                E+++L   +     ++           E   RL E+   E+L++ + +       
Sbjct: 148 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFR 207

Query: 564 SATTEANIVDVR-----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-IL 617
                A++  +      +  Q+ +A  K+      + +E++ QI +   + + + +   L
Sbjct: 208 QDVDNASLARLDLERKVESLQEEIAFLKKLH--DEEIQELQAQIQEQHVQIDVDVSKPDL 265

Query: 618 ISILHEVHIQ 627
            + L +V  Q
Sbjct: 266 TAALRDVRQQ 275


>gi|66472230|ref|NP_001018577.1| calcium binding and coiled-coil domain 2 [Danio rerio]
 gi|63100623|gb|AAH95200.1| Calcium binding and coiled-coil domain 2 [Danio rerio]
 gi|182891528|gb|AAI64690.1| Calcoco2 protein [Danio rerio]
          Length = 528

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 30/283 (10%), Positives = 79/283 (27%), Gaps = 9/283 (3%)

Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
           +D   F +     +   +   S P       +ET        D            +   K
Sbjct: 95  KDDGEFYQFCYVDSSGHVKGASTPFCFQN--QETSLDCSLEKDLLVITTQEQTEIMEKEK 152

Query: 417 DQKLRY-YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           +  L+     +     L+    + + E S      +        + P       + ++  
Sbjct: 153 EDFLKEIESLKETNTILRNELDERLHEMSRLRSTMEDLKSKDKPETPLPDEQSYNAIEES 212

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
           L+      E A+    +    + QE+ +    I   + E  +L + L            +
Sbjct: 213 LTPLQEKYEKAVQKIFV----LKQERTELQQQIELQDTETLRLSTLLKEMEQNYSKVQDQ 268

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
               +L  +   +  ++L  ++++           +       +       + + L  Q 
Sbjct: 269 AKLLQLDVQSSRKDNEKLQMEIQELRKDCRAENKALQTSMLEQRAQENDKVQIQALLTQL 328

Query: 596 EEIEKQIAQVTAKGEAE--KTAILISILHEVHIQIHQIESQEA 636
            E    +       +    +       L E+  +  ++  ++A
Sbjct: 329 TEARGLLRTEVQTCKEACRRAEGAEQELRELKKKQEEMSQKQA 371


>gi|55624418|ref|XP_517799.1| PREDICTED: oral-facial-digital syndrome 1 protein isoform 3 [Pan
           troglodytes]
          Length = 1005

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 96/276 (34%), Gaps = 19/276 (6%)

Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427
             A E   +E+            E                +K     IK  + +    + 
Sbjct: 151 HQAKESCNMETQTSSTFSRDSLAEKLQLIDDQFADAYPQRIKFESLEIKLNEYKREIEEQ 210

Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487
           +R+ + Q  + +     G  +   K    ++         ++   K   S+   +RE + 
Sbjct: 211 LREEICQKLKFFKDTEIGKIKMEAKKKYEKELAVFQNDFEKACQAK---SEALVIREKST 267

Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547
           L  +  H  I  E  +  A  +    ++  L      +   ++     E++Q+L E    
Sbjct: 268 LERIQKHQEI--ETKEIYAQRQLLLKDMDLLRG---REAELKQRVEAFELNQKLQEEKHK 322

Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-----QALALYKRFRLLSRQKEE----I 598
            + + L R+ ++   +  T +  + +    YQ       +    R     R+ +E    +
Sbjct: 323 SMTEALRRREQNIKSFERTYDQKLKNELLKYQLELKDDYIIRTNRLIEDERKNKEKAVHL 382

Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
           ++++    +K   E+    I+ + E+ +++  +++Q
Sbjct: 383 QEELIAFNSK--KEELNQSINRMKELELELESVKAQ 416


>gi|24640670|ref|NP_525082.2| moesin, isoform D [Drosophila melanogaster]
 gi|45554615|ref|NP_996388.1| moesin, isoform I [Drosophila melanogaster]
 gi|45554624|ref|NP_996389.1| moesin, isoform H [Drosophila melanogaster]
 gi|45554632|ref|NP_996390.1| moesin, isoform G [Drosophila melanogaster]
 gi|45554644|ref|NP_996391.1| moesin, isoform F [Drosophila melanogaster]
 gi|45554651|ref|NP_996392.1| moesin, isoform E [Drosophila melanogaster]
 gi|17863046|gb|AAL40000.1| SD10366p [Drosophila melanogaster]
 gi|22833030|gb|AAF46415.2| moesin, isoform D [Drosophila melanogaster]
 gi|45446872|gb|AAS65294.1| moesin, isoform E [Drosophila melanogaster]
 gi|45446873|gb|AAS65295.1| moesin, isoform F [Drosophila melanogaster]
 gi|45446874|gb|AAS65296.1| moesin, isoform G [Drosophila melanogaster]
 gi|45446875|gb|AAS65297.1| moesin, isoform H [Drosophila melanogaster]
 gi|45446876|gb|AAS65298.1| moesin, isoform I [Drosophila melanogaster]
          Length = 575

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEK 600
            E+   +  ++  +    A   +   +    D  +  Q+ +   +R           +E+
Sbjct: 312 EEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEDMERSQRDLLEAQDMIRRLEE 371

Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           Q+ Q+ A  +  +       L  +  ++ + ++ EA+
Sbjct: 372 QLKQLQAAKDELELRQ--KELQAMLQRLEEAKNMEAV 406


>gi|27545420|ref|NP_775449.1| serine/threonine-protein kinase TAO1 [Rattus norvegicus]
 gi|78099178|sp|O88664|TAOK1_RAT RecName: Full=Serine/threonine-protein kinase TAO1; AltName:
           Full=Thousand and one amino acid protein 1
 gi|3452473|gb|AAC71014.1| serine/threonine protein kinase TAO1 [Rattus norvegicus]
          Length = 1001

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 53/158 (33%), Gaps = 25/158 (15%)

Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570
              + + L + L            + + +RL E    +L    ++         +T    
Sbjct: 733 QTRQYKALRNHLLE---TTPKSEHKAVLKRLKEEQTRKLAILAEQYDHSINEMLSTQALR 789

Query: 571 IVDVRQGYQQALALYKRFRLL-----------------SRQKEEIEKQI---AQVTAKGE 610
           + + ++   Q L +  +  L                   R+  E+E+++     +  +  
Sbjct: 790 LDEAQEAECQVLKMQLQQELELLNAYQSKIKMQAEAQHDRELRELEQRVSLRRALLEQKI 849

Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648
            E+   L +   E    + + +++E  IE F   S RL
Sbjct: 850 EEEMLALQNERTERIRSLLERQARE--IEAFDSESMRL 885


>gi|29336525|sp|P97690|SMC3_RAT RecName: Full=Structural maintenance of chromosomes protein 3;
           Short=SMC protein 3; Short=SMC-3; AltName: Full=Basement
           membrane-associated chondroitin proteoglycan;
           Short=Bamacan; AltName: Full=Chondroitin sulfate
           proteoglycan 6; AltName: Full=Chromosome segregation
           protein SmcD
 gi|1785540|gb|AAB96342.1| basement membrane-associated chondroitin proteoglycan Bamacan
           [Rattus norvegicus]
          Length = 1191

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 36/346 (10%), Positives = 93/346 (26%), Gaps = 24/346 (6%)

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T     ++  L K     +   + +   L    K   +                    D 
Sbjct: 182 TEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDE 241

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            S  R        +L        D +   E + R   T     + E             +
Sbjct: 242 LSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQL-------SAE 294

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    Q  +  L+    +     +   R      R +  +   ++  + +  + K +  
Sbjct: 295 RQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSV 354

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK--LWSFL--FSDFVEQKYFLPE 535
               E  +               ++    ++ + E +   +   L      +  K     
Sbjct: 355 KEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIA 414

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            IH+ L +               +             D+ +   +   L +++  +  +K
Sbjct: 415 AIHKDLEDTE------------ANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKK 462

Query: 596 EEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMIEG 640
           +E++ +   +  +  AE +         E   Q+ +  + +A++ G
Sbjct: 463 DELQSERNYLWREENAEQQALAAKREDLEKKQQLLRAATGKAILNG 508


>gi|27805841|ref|NP_776720.1| structural maintenance of chromosomes protein 3 [Bos taurus]
 gi|29336596|sp|O97594|SMC3_BOVIN RecName: Full=Structural maintenance of chromosomes protein 3;
           Short=SMC protein 3; Short=SMC-3; AltName:
           Full=Chondroitin sulfate proteoglycan 6
 gi|4235255|gb|AAD13142.1| SMC3 protein [Bos taurus]
          Length = 1218

 Score = 38.3 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 36/346 (10%), Positives = 93/346 (26%), Gaps = 24/346 (6%)

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           T     ++  L K     +   + +   L    K   +                    D 
Sbjct: 182 TEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDE 241

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
            S  R        +L        D +   E + R   T     + E             +
Sbjct: 242 LSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQL-------SAE 294

Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479
            +    Q  +  L+    +     +   R      R +  +   ++  + +  + K +  
Sbjct: 295 RQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSV 354

Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK--LWSFL--FSDFVEQKYFLPE 535
               E  +               ++    ++ + E +   +   L      +  K     
Sbjct: 355 KEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIA 414

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595
            IH+ L +               +             D+ +   +   L +++  +  +K
Sbjct: 415 AIHKDLEDTE------------ANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKK 462

Query: 596 EEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQIESQEAMIEG 640
           +E++ +   +  +  AE +         E   Q+ +  + +A++ G
Sbjct: 463 DELQSERNYLWREENAEQQALAAKREDLEKKQQLLRAATGKAILNG 508


>gi|332822653|ref|XP_001148181.2| PREDICTED: protein Spindly isoform 6 [Pan troglodytes]
          Length = 605

 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 71/201 (35%), Gaps = 8/201 (3%)

Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486
            + DR   + ++ I+    Y    K+N  +R Q    +  + + L       +   +E  
Sbjct: 260 EVEDRRAAMERQLISMKVKYQSLKKQNVFNRKQMQRMKLQIATLLQMKGSQTEFEQQER- 318

Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD-FVEQKYFLPEEIHQRLCERG 545
           LL  L      ++    E+ ++     + + L+  + S   V+         +  L +  
Sbjct: 319 LLAMLEQKNGEIKHLLGEIRNLE----KFKNLYDSMESKPSVDSGTLEDNTYYTDLLQMK 374

Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605
              L K+++    +  +                ++  A  +  +L   +  ++  ++ ++
Sbjct: 375 LDNLNKEIESTKGELSIQRMKALFESQRALDIERKLFANERCLQLSESENMKLRAKLDEL 434

Query: 606 TAKGEAEKTAI--LISILHEV 624
             K E E+T    ++    EV
Sbjct: 435 KLKYEPEETVEVPVLKKRREV 455


>gi|326931132|ref|XP_003211688.1| PREDICTED: huntingtin-interacting protein 1-like [Meleagris
           gallopavo]
          Length = 1063

 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 81/245 (33%), Gaps = 18/245 (7%)

Query: 406 IHLKNCINHIKDQKLRYYYSQAIRD-RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464
                    I D       SQ++ D +   +F    +             +    +   Q
Sbjct: 338 EASSPDSEPITDLVEMETASQSLFDNKFDDIFGSSFSSDPFNFNSQNGMNKDDKDRLIEQ 397

Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE-------LADIRYDNNELQK 517
              +   +K +L    +  E   L        +  E  ++       L D  +   EL++
Sbjct: 398 LYREIGALKEELESFKAESERHSLQLRGRISELEAELAEQRHLKQQALDDSEFLRTELEE 457

Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577
           L          Q+     E   +  E+ + +L ++    V++                + 
Sbjct: 458 LKKQREDTEKAQRSLTEIERRAQANEQRYSKLKEKYSELVQNHADLLRKN-------AEV 510

Query: 578 YQQALALYKRFRLLSRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634
            +Q     +    + R+K+E+E   +++++ + +   E+  +L ++  E+     +++  
Sbjct: 511 TKQVTVARQAQGDVEREKKELEDSFQRVSEQSQRKSQEQAEVLETLKRELAASKQELQVL 570

Query: 635 EAMIE 639
           +  +E
Sbjct: 571 QGTLE 575


>gi|317967964|ref|ZP_07969354.1| SMC ATPase superfamily chromosome segregation protein [Synechococcus
            sp. CB0205]
          Length = 1201

 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 78/265 (29%), Gaps = 34/265 (12%)

Query: 387  KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446
            +   +  S    + R +L   +K     +   + R    QAI   L  L Q      +  
Sbjct: 757  RTAAQRASGPLQERRNQLSARIKQIETDLGGGQQR---LQAIATELTPLQQALQQLEASE 813

Query: 447  GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK----PSLREAALLLTLINHPAILQEQY 502
                      R Q    +     + +     ++     + RE  L          +  Q 
Sbjct: 814  ASAQASGDSERWQGLQQELEAADAALTQARQERDNLLAARRERGLAA------ERVSSQL 867

Query: 503  QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562
            Q L          Q+L   + +   E+  +  ++   +          ++L  +  +   
Sbjct: 868  QALGGEE------QRLAQAVNALIAERTQWKEQQQADQQKRSTLEAKQQELQTRFGERRR 921

Query: 563  WSATTEANIVDVRQGYQQALALYKRFRLLSR-----------QKEEIEKQIA----QVTA 607
                 EA +   RQ  QQ     +R                 + E++++++     ++  
Sbjct: 922  ARDEAEAQLAKQRQALQQQEWELQRLGEELLALAEEERSSGGRLEQLQRELPDPLPEIPE 981

Query: 608  KGEAEKTAILISILHEVHIQIHQIE 632
            +        L + L  +  ++  +E
Sbjct: 982  EVRENGLEALQAELKSLQQRMEALE 1006



 Score = 37.6 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 69/197 (35%), Gaps = 11/197 (5%)

Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497
           K +       +  ++N R    +G S     S  +    ++  +L E  LL       + 
Sbjct: 263 KQLQSRQEALKRQQENERQSVSEGRSTLETASKALDALQAEVKALGEDQLLAV----QSE 318

Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVE--QKYFLPEEIHQRLCERGFGELLKQLDR 555
           L        ++     + Q+    L    +E  ++    ++   +L        L++ + 
Sbjct: 319 LAGLEASARELSRQAEKHQQGAEELQRQRMELGRQQADLKQQQSQLNSADDQASLEEAEA 378

Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA--QVTAKGEAEK 613
             R A      +   + +V       L   K+    SRQ++E++ +++  Q   +   E+
Sbjct: 379 GCRTAEAAVELSRRRLGEVAGRSGSWLEEQKQR---SRQRQELQAKLSPLQAEQQQLVER 435

Query: 614 TAILISILHEVHIQIHQ 630
                  L E+  Q+ Q
Sbjct: 436 LRQEQERLGELQEQLQQ 452


>gi|301755250|ref|XP_002913470.1| PREDICTED: coiled-coil domain-containing protein 136-like
           [Ailuropoda melanoleuca]
          Length = 1146

 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/94 (10%), Positives = 33/94 (35%), Gaps = 1/94 (1%)

Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601
                      +   V       A  + +  +  +   Q   L  R + L  + +  EK+
Sbjct: 838 EPEDGERCEDMVATVVIKLQGVQAMYQLSQEEHNRLQDQMRKLLDRQKELKEELDACEKE 897

Query: 602 IAQ-VTAKGEAEKTAILISILHEVHIQIHQIESQ 634
             + + +  +   +   ++ + E+  ++ +++ Q
Sbjct: 898 FKECMESLEKPTASPADMNEIRELQARLRELQLQ 931


>gi|156098625|ref|XP_001615328.1| liver stage antigen [Plasmodium vivax SaI-1]
 gi|148804202|gb|EDL45601.1| liver stage antigen, putative [Plasmodium vivax]
          Length = 1507

 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 95/284 (33%), Gaps = 18/284 (6%)

Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420
                  + A ++ + +     +       E        E  +L    +         +L
Sbjct: 686 ERAMREKEAALKEELKKVESEAERKVAVLEEELETRRAQEMEQLGGEQREVTRGELRAEL 745

Query: 421 RYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475
           R      +R  L+     +L  +   E     R   K+    D +   +  + + L    
Sbjct: 746 RNEVVAELRGELKGEVMEELRGELRNEVVTELRGELKDGVITDLRTELKEEVAAELRTQL 805

Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535
             +     E A  L   N  + L++  +++ + +        + + +     E      E
Sbjct: 806 KDEAAGDLEKAKKLAEDNFNSKLEKYKEKMEENK-----NDFIKNLIVEKNGE-----VE 855

Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS--R 593
            +  +L +    E+ +  + Q R           ++++  + +QQ L   KR   L   R
Sbjct: 856 ALRCQLEKMKDEEICQLREEQQRALNENMEQMRQSLLEGEKQHQQHLEEVKRECELEKSR 915

Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637
           + E +  ++++   + E + +      L +V  Q+ + E +E +
Sbjct: 916 EIEVLRGEVSRREEELEKQLSEEHEERLAQVEKQLSE-EHEERL 958


>gi|125815888|ref|XP_695620.2| PREDICTED: coiled-coil alpha-helical rod protein 1 [Danio rerio]
          Length = 762

 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 66/218 (30%), Gaps = 16/218 (7%)

Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
              +  RL    ++  T H    R        +  + P   +++S +   K   +    E
Sbjct: 456 VSQLNHRLAFAAKRLDTVHGLLLRKEALWRTKQATRCPEPAVLESFINSLKAEVEMLSTE 515

Query: 485 AALLLTLINH-PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543
              L   +   P ++Q    EL      + +L  L   L S   E+         + L  
Sbjct: 516 RDTLAQELKRTPELIQASLSELQQQ--RDRDLSHLREAL-SHSREELEASESSRMETLRH 572

Query: 544 --------RGFGELLKQLDRQVRDAGLWSATTE----ANIVDVRQGYQQALALYKRFRLL 591
                          ++L +Q        +  E      + DV      A   + +  + 
Sbjct: 573 CEEQEGTIAELRTEAQRLQQQCDSVLQRVSEVESVCAEKLRDVEAQLNTARREHTKAVVA 632

Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629
            RQ +   ++  +   + E E+T      +  +  Q+ 
Sbjct: 633 LRQVQRQVEREKEQMKEAERERTEHTHRQITHLQKQLK 670


>gi|123442306|ref|YP_001006285.1| hypothetical protein YE2036 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089267|emb|CAL12113.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 390

 Score = 38.3 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 84/274 (30%), Gaps = 13/274 (4%)

Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432
           KL +++L         +   R     D      + L   +  I +  LR   +++   + 
Sbjct: 80  KLELKALEEQLSDLIDKRNERIQLLDDFNDLYLVRLGPLMKQILN--LRKQLAESTLRKA 137

Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492
           +   ++   ++    +Y  +              + S   +    +    ++A L+  L+
Sbjct: 138 EAEARRRERDYRNCQQYISQAIDELAALKQRWLALPSISSETIEIRNRIQQQAELITALL 197

Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF----GE 548
                L+  +        +    +K        +   +    +   +   ++       +
Sbjct: 198 AEIKELENNF-----CTRNTESTRKAREDAKEKYESYQEKQTDAEQRLNNDKKLSSHQRQ 252

Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--FRLLSRQKEEIEKQIAQVT 606
            LK+L RQ           +       Q   Q     +R  F  +    E +++ +  + 
Sbjct: 253 ELKRLWRQASRLCHPDLVADEFKEKAHQLMVQLNQARQRGDFPAIHALLESLKQGLEPLM 312

Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640
           +    +    L   + EV  QI  I  +   +EG
Sbjct: 313 SSDVIDDLERLRRKIDEVRKQIDAILHELKALEG 346


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.310    0.116    0.308 

Lambda     K      H
   0.267   0.0354    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,623,342,884
Number of Sequences: 14124377
Number of extensions: 181671315
Number of successful extensions: 940061
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 6003
Number of HSP's successfully gapped in prelim test: 23530
Number of HSP's that attempted gapping in prelim test: 842535
Number of HSP's gapped (non-prelim): 88999
length of query: 648
length of database: 4,842,793,630
effective HSP length: 146
effective length of query: 502
effective length of database: 2,780,634,588
effective search space: 1395878563176
effective search space used: 1395878563176
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 84 (37.2 bits)